cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5076082
title: EXPLO. Sovjan 2021. OxCal code for radiocarbon dated tree-rings and charcoal

description: Code used for modelling radiocarbon dated tree-rings and previously published charcoal dates from the archaeological site of Sovjan. Software used: OxCal v4.4.2 (Bronk Ramsey, 2020; Dee and Bronk Ramsey, 2014) presented in "<em>The Early Bronze Age dendrochronology of Sovjan (Albania): A first tree-ring sequence of the 24th – 22nd c. BC for the southwestern Balkans</em>", Maczkowski et al., 2021, DOI: 10.1016/j.dendro.2021.125811
DOI: 10.5281/zenodo.5076069
title: EXPLO. Sovjan 2021. Radiocarbon raw data from tree-rings

description: Raw radiocarbon measurements from the tree-rings sampled from wooden elements from the archaeological site of Sovjan, Albania, measured in 2020 and presented in "<em>The Early Bronze Age dendrochronology of Sovjan (Albania): A first tree-ring sequence of the 24th – 22nd c. BC for the southwestern Balkans</em>", Maczkowski et al., 2021, DOI: 10.1016/j.dendro.2021.125811
DOI: 10.5281/zenodo.5076068
title: EXPLO. Sovjan 2021. Radiocarbon raw data from tree-rings

description: Raw radiocarbon measurements from the tree-rings sampled from wooden elements from the archaeological site of Sovjan, Albania, measured in 2020 and presented in "<em>The Early Bronze Age dendrochronology of Sovjan (Albania): A first tree-ring sequence of the 24th – 22nd c. BC for the southwestern Balkans</em>", Maczkowski et al., 2021, DOI: 10.1016/j.dendro.2021.125811
DOI: 10.5281/zenodo.5082718
title: Datasets for the Carpentry-style RNA-seq lesson

description: <strong>Lesson files</strong> File descriptions:<br> - <strong>counts.txt</strong>: a dataframe of the sample raw counts. It is a tab separated file therefore data are in tabulated separated columns.<br> - <strong>experimental_design_modified.txt</strong> dataframe indicates the correspondence between samples and experimental conditions (e.g. control, treated). <br> - <strong>differential_genes.tsv</strong> dataframe contains the result of the DESeq2 analysis. The counts.txt file was obtained by running the `v0.1.1` version of a RNA-Seq bioinformatic pipeline on the mRNA-Seq sequencing files from Vogel et al. (2016): https://www.ebi.ac.uk/ena/data/view/PRJEB13938. Please read the original study (Vogel et al. 2016): https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.14036 ==== <strong>Project files</strong> The NASA GeneLab experiment GLDS-38 performed transcriptomics and proteomics of Arabidopsis seedlings in microgravity by sending seedlings to the International Space Station (ISS). The raw counts, scaled counts and sample to conditions files are available in the ZIP archive
DOI: 10.15468/57tga9
title: Pelagia benovici sp. nov. (Cnidaria, Scyphozoa): a new jellyfish in the Mediterranean Sea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Piraino, Stefano, Aglieri, Giorgio, Martell, Luis, Mazzoldi, Carlotta, Melli, Valentina, Milisenda, Giacomo, Scorrano, Simonetta, Boero, Ferdinando (2014): Pelagia benovici sp. nov. (Cnidaria, Scyphozoa): a new jellyfish in the Mediterranean Sea. Zootaxa 3794 (3): 455-468, DOI: http://dx.doi.org/10.11646/zootaxa.3794.3.7
DOI: 10.15468/amugf4
title: A new species of Shaanxispira (Bovidae, Artiodactyla) from the upper Miocene of China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Shi, Qinqin, He, Wen, Chen, Shanqin (2014): A new species of Shaanxispira (Bovidae, Artiodactyla) from the upper Miocene of China. Zootaxa 3794 (4): 501-513, DOI: http://dx.doi.org/10.11646/zootaxa.3794.4.1
DOI: 10.15468/3n6qeg
title: A new subgenus and species of Topomyia (Diptera: Culicidae: Sabethini) based on a remarkable male mosquito from Sabah, Malaysia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Harbach, Ralph E., Culverwell, C. Lorna (2014): A new subgenus and species of Topomyia (Diptera: Culicidae: Sabethini) based on a remarkable male mosquito from Sabah, Malaysia. Zootaxa 3794 (4): 575-580, DOI: http://dx.doi.org/10.11646/zootaxa.3794.4.8
DOI: 10.5281/zenodo.5082778
title: Dataset Package for the paper "Automated Test Cases Prioritization for Self-driving Cars in Virtual Environments"

description: <br> #Dataset Package for the paper "Automated Test Cases Prioritization for Self-driving Cars in Virtual Environments" <br> Description of the content: <br> 1) "1_datasets" folder contains all the datasets concerning the test scenarios considered in the study. <br> <br> - AsFault supports two SDC software as test subjects while generating test cases, which we use to generate our test suites.<br> - BeamNG.AI. <br> - DeepDriving<br> - STRUCTURE: We report test subjects considered and organized with sub-folders for each of the supported two SDC software (i.e., Driving AIs):<br> - fullroad<br> - BeamNG_AI<br> - Driver_AI<br> 2) "2_SDC-source-code" contains all code and scripts composing the MATLAB/R prototypical implementation of SDC-pririotizer: - STRUCTURE:<br> - runSearch.m<br> - runGreedy.m<br> - plotResults.m<br> - permutationMutation.m<br> - mainGreedy.m<br> - permutationCrossover.m<br> - main.m<br> - initialPopulation.m<br> - fitness.m<br> - featureSelection.m<br> - faultDetectionRatePlots.m<br> - faultDetection.m<br> - (folder) r-script<br> - (folder) python<br> <br> 3) "3_study-data" folder contains all the main experimental data concerning the study conducted, RQs and all generated figures and main row-data reported in section results<br> <br> - results.csv<br> - greedy_results.csv<br> - (folder) tables<br> - (folder) figures<br> - (folder) DriverAI<br> - (folder) BeamNG_RF_1_5<br> - (folder) BeamNG_RF_1
DOI: 10.15468/rjmrjd
title: A new genus of Podonominae (Diptera: Chironomidae) in Late Eocene Rovno amber from Ukraine

description: This dataset contains the digitized treatments in Plazi based on the original journal article Baranov, Viktor, Andersen, Trond, Perkovsky, Evgeny (2014): A new genus of Podonominae (Diptera: Chironomidae) in Late Eocene Rovno amber from Ukraine. Zootaxa 3794 (4): 581-586, DOI: http://dx.doi.org/10.11646/zootaxa.3794.4.9
DOI: 10.6073/pasta/a58907afb7fb2ae0a51bb9a5c542fc3a
title: Synthesis of Sarracenia Research in North America 1982-2018

description: This archive includes the raw data and code (R scripts) required to reproduce all of the analyses and figures in the book Scaling Sarracenia: Ecology of a Model System by Aaron M. Ellison and Nicholas J. Gotelli. The book is a synthesis of our 25 years of research on the northern (a.k.a. purple) pitcher plant Sarracenia purpurea viewed through the conceptual lens of “scale”: scaling ecological phenomena through levels of biological organization with a model organism, across time and space, and using macroecological relationships.
DOI: 10.6073/pasta/abd3cc21c0c35f8c442df2109197705d
title: Age of Nonstructural Carbohydrates in Four Tree Species at Harvard Forest 2015

description: We estimated the mean age of sugars within and between different organs of four temperate tree species using the radiocarbon (carbon-14) bomb spike approach. Radial patterns of carbon-14 in the stemwood and coarse roots showed that sugars tended to became older when moving towards the pith.
DOI: 10.6073/pasta/44a740ae77e268103f3c152405432856
title: Gene Expression and Tree Growth in the CTFS-ForestGEO Plot at Harvard Forest 2017-2019

description: Major goals in ecosystem ecology have been to scale from leaves to canopies and to determine whether individual-level, intra-species and inter-specific variation is critical for models projecting ecosystem processes now and in the future. The project is important in that it examines these issues in detail considering genotypes and levels of gene expression all the way up to canopy level CO2 flux. Ecological genomics and transcriptomics are nascent fields that have been primarily restricted to model species in natural and (mostly) controlled environments. To date, we have very few studies of non-model organisms in nature and/or studies of functional genomics through space and time. The research is producing extraordinarily rich datasets regarding the gene expression of trees across populations, through space in each population, across the growing season and across years and linking this information to growth and gas exchange. It will, therefore, provide tremendous insights into how much variation exists in nature thereby guiding sampling designs in future ecological 'omics projects. More importantly, it will provide unusually detailed phenotypic information for important non-model species that have large impacts on the CO2 flux of eastern US forests.
DOI: 10.5281/zenodo.5082684
title: The replication package for the paper "Unsupervised Learning of General-Purpose Embeddings for Code Changes"

description: The replication package for the paper "Unsupervised Learning of General-Purpose Embeddings for Code Changes". To get the detailed instructions, please, consult the README file in the archive.
DOI: 10.5281/zenodo.5082683
title: The replication package for the paper "Unsupervised Learning of General-Purpose Embeddings for Code Changes"

description: The replication package for the paper "Unsupervised Learning of General-Purpose Embeddings for Code Changes". To get the detailed instructions, please, consult the README file in the archive.
DOI: 10.21227/7t54-mt12
title: Reconstructed Roundabout Driving Dataset

description: This dataset is based on the ACFR Five Roundabouts Dataset. The original tracking data of over 23,000 traffic vehicles have been processed with an optimization-based filtering method to combat measurement noise and errors. Smooth velocity and acceleration signals are reconstructed. The processed recordings have then undergone a selection process using DBSCAN to remove the erroneous samples. The remaining samples contained in this dataset are considered representative of how average human drivers approach a roundabout scenario in daily driving.
DOI: 10.6073/pasta/8b94c4e4d1062420d73456b94fb8fd43
title: Soil Carbon and Nitrogen at the Harvard Farm at Harvard Forest since 2015

description: These data represent baseline soil bulk density and total soil carbon and nitrogen concentrations for the three grazing treatments at Harvard Farm: hay (no grazing), rotational grazing, and intensive grazing. These samples were collected at the beginning of the study, so any differences across plots or treatments are due to inherent soil variability at the site rather than the treatments themselves. These data were collected to establish the starting conditions with which to compare potential treatment effects at later sampling dates.
DOI: 10.5517/ccdc.csd.cc25bpfn
title: CCDC 2006271: Experimental Crystal Structure Determination

description: Related Article: Saroj Kumar Kushvaha, Maria Francis, Jayasree Kumar, Ekta Nag, Prathap Ravichandran, Sudipta Roy, Kartik Chandra Mondal|2021|RSC Advances|11|22849|doi:10.1039/D1RA03071J
DOI: 10.5517/ccdc.csd.cc26rbfr
title: CCDC 2048214: Experimental Crystal Structure Determination

description: Related Article: Sheng-Tao Fang, Xiang-Hong Liu, Bing-Fei Yan, Feng-Ping Miao, Xiu-Li Yin, Wen-Zuo Li, Nai-Yun Ji|2021|J.Nat.Prod.|84|1763|doi:10.1021/acs.jnatprod.1c00021
DOI: 10.5517/ccdc.csd.cc26rbjv
title: CCDC 2048217: Experimental Crystal Structure Determination

description: Related Article: Sheng-Tao Fang, Xiang-Hong Liu, Bing-Fei Yan, Feng-Ping Miao, Xiu-Li Yin, Wen-Zuo Li, Nai-Yun Ji|2021|J.Nat.Prod.|84|1763|doi:10.1021/acs.jnatprod.1c00021
DOI: 10.5517/ccdc.csd.cc26t2ns
title: CCDC 2049895: Experimental Crystal Structure Determination

description: Related Article: Santa Mondal, Sabina Yashmin, Rashid Ali, R Soundaram, Siddhartha S. Ghosh, Abu Taleb Khan|2021|Org.Biomol.Chem.|19|5818|doi:10.1039/D1OB00846C
DOI: 10.5517/ccdc.csd.cc26t4kr
title: CCDC 2049954: Experimental Crystal Structure Determination

description: Related Article: Yao Xiao, Neng Wang, Lin-Xi Wan, Xian-Li Zhou, Xiaohuan Li, Feng Gao|2021|J.Nat.Prod.|84|1838|doi:10.1021/acs.jnatprod.0c01363
DOI: 10.5517/ccdc.csd.cc26wdyg
title: CCDC 2052136: Experimental Crystal Structure Determination

description: Related Article: Xiang-Ji Liao, Jin-Jun Zhu, Li Yuan, Zhi-Ping Yan, Xu-Feng Luo, Yi-Pin Zhang, Jun-Jian Lu, You-Xuan Zheng|2021|J.Mater.Chem.C|9|8226|doi:10.1039/D1TC01449H
DOI: 10.5517/ccdc.csd.cc26wftc
title: CCDC 2052163: Experimental Crystal Structure Determination

description: Related Article: Xiang-Ji Liao, Jin-Jun Zhu, Li Yuan, Zhi-Ping Yan, Xu-Feng Luo, Yi-Pin Zhang, Jun-Jian Lu, You-Xuan Zheng|2021|J.Mater.Chem.C|9|8226|doi:10.1039/D1TC01449H
DOI: 10.15468/z9uktb
title: Additional dates of Sir Andrew Smith’s Illustrations of the Zoology of South Africa

description: This dataset contains the digitized treatments in Plazi based on the original journal article Low, Martyn E. Y., Evenhuis, Neal L. (2014): Additional dates of Sir Andrew Smith’s Illustrations of the Zoology of South Africa. Zootaxa 3795 (4): 483-488, DOI: http://dx.doi.org/10.11646/zootaxa.3795.4.7
DOI: 10.6073/pasta/c04fcf57ed7845d4c2fd72cf7f09f2dc
title: Leaf and Soil Nitrogen Following Gypsy Moth Defoliation in Central Massachusetts 2018-2019

description: In this study we investigated relationships between ecosystem nitrogen (N) cycling and tree defoliation during a recent 2015-2018 irruption of invasive gypsy moth caterpillars (Lymantria dispar), which can cause tree stress and sometimes mortality following multiple years of defoliation. Nitrogen is a critical nutrient that limits the growth of caterpillars and plants in temperate forests. We assessed the associations between N concentrations, soil solution inorganic N availability, and defoliation intensity by L. dispar at the scale of individual trees in the Amherst, MA area and forest plots in the Quabbin Reservoir area.
DOI: 10.6084/m9.figshare.14815758
title: Transforming Nursing Home Culture: Opinion of Older People. A Cross-Sectional Study in Belgium.

description: We also aim to identify what is important to them in nursing home choice.<b><i> </i></b>A cross-sectional study based on the analysis of two brochures was made: one integrating traditional nursing home information and the other culture change information. Participants (n=71) were first asked what the most important features were, if they were choosing a nursing home. The elements cited by the participants were then evaluated by external expert judges to identify their orientation (traditional or culture change). Participants were then asked to consider the two brochures and after reading each, to assess their wish to enter the nursing home and their feelings about: the care given by professionals, respect of their personal habits and their freedom of choice, professionals support, the home-like atmosphere and the freedom to live their life. Finally, they were asked to choose one nursing home. The majority of the elements evaluated by the external judges have a culture change orientation. After reading the culture change brochure, participants felt more inclined to enter the nursing home, and believed that: they would be better cared, they would be better respected (habits and choice), they would feel more "like at home" and freer to live the life they desired, compared to the traditional brochure. Finally, most participants choose the culture change nursing home as their final choice. The results suggest the interest of moving towards a culture change within our institutional environments. <b><i></i></b>
DOI: 10.6084/m9.figshare.14815758.v3
title: Transforming Nursing Home Culture: Opinion of Older People. A Cross-Sectional Study in Belgium.

description: We also aim to identify what is important to them in nursing home choice.<b><i> </i></b>A cross-sectional study based on the analysis of two brochures was made: one integrating traditional nursing home information and the other culture change information. Participants (n=71) were first asked what the most important features were, if they were choosing a nursing home. The elements cited by the participants were then evaluated by external expert judges to identify their orientation (traditional or culture change). Participants were then asked to consider the two brochures and after reading each, to assess their wish to enter the nursing home and their feelings about: the care given by professionals, respect of their personal habits and their freedom of choice, professionals support, the home-like atmosphere and the freedom to live their life. Finally, they were asked to choose one nursing home. The majority of the elements evaluated by the external judges have a culture change orientation. After reading the culture change brochure, participants felt more inclined to enter the nursing home, and believed that: they would be better cared, they would be better respected (habits and choice), they would feel more "like at home" and freer to live the life they desired, compared to the traditional brochure. Finally, most participants choose the culture change nursing home as their final choice. The results suggest the interest of moving towards a culture change within our institutional environments. <b><i></i></b>
DOI: 10.6084/m9.figshare.14815758.v2
title: Transforming Nursing Home Culture: Opinion of Older People. A Cross-Sectional Study in Belgium.

description: We also aim to identify what is important to them in nursing home choice.<b><i> </i></b>A cross-sectional study based on the analysis of two brochures was made: one integrating traditional nursing home information and the other culture change information. Participants (n=71) were first asked what the most important features were, if they were choosing a nursing home. The elements cited by the participants were then evaluated by external expert judges to identify their orientation (traditional or culture change). Participants were then asked to consider the two brochures and after reading each, to assess their wish to enter the nursing home and their feelings about: the care given by professionals, respect of their personal habits and their freedom of choice, professionals support, the home-like atmosphere and the freedom to live their life. Finally, they were asked to choose one nursing home. The majority of the elements evaluated by the external judges have a culture change orientation. After reading the culture change brochure, participants felt more inclined to enter the nursing home, and believed that: they would be better cared, they would be better respected (habits and choice), they would feel more "like at home" and freer to live the life they desired, compared to the traditional brochure. Finally, most participants choose the culture change nursing home as their final choice. The results suggest the interest of moving towards a culture change within our institutional environments. <b><i></i></b>
DOI: 10.5281/zenodo.5082874
title: Datasets for the Carpentry-style RNA-seq lesson

description: <strong>Lesson files</strong> File descriptions:<br> - <strong>counts.txt</strong>: a dataframe of the sample raw counts. It is a tab separated file therefore data are in tabulated separated columns.<br> - <strong>experimental_design_modified.txt</strong> dataframe indicates the correspondence between samples and experimental conditions (e.g. control, treated). <br> - <strong>differential_genes.tsv</strong> dataframe contains the result of the DESeq2 analysis. The counts.txt file was obtained by running the `v0.1.1` version of a RNA-Seq bioinformatic pipeline on the mRNA-Seq sequencing files from Vogel et al. (2016): https://www.ebi.ac.uk/ena/data/view/PRJEB13938. Please read the original study (Vogel et al. 2016): https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.14036 ==== <strong>Project files</strong> The NASA GeneLab experiment GLDS-38 performed transcriptomics and proteomics of Arabidopsis seedlings in microgravity by sending seedlings to the International Space Station (ISS). The raw counts, scaled counts and sample to conditions files are available in the ZIP archive
DOI: 10.6073/pasta/44296d588a25ef60661d6cf8b56fcf08
title: Foundation Species in Forest Dynamics Plots of China 2004-2014

description: Foundation species structure forest communities and ecosystems but are difficult to identify without long-term observations or experiments. We used statistical criteria---outliers from size-frequency distributions and scale-dependent negative effects on alpha diversity and positive effects on beta diversity---to identify candidate foundation woody plant species in 12 large forest-dynamics plots spanning 26 degrees of latitude in China. We used these data to: [1] identify candidate foundation species in Chinese forests; [2] test the hypothesis---based on observations of a mid-latitude peak in functional trait diversity and high local species richness but few numerically dominant species in tropical forests---that foundation woody plant species are more frequent in temperate than tropical or boreal forests; and [3] compare these results with data from the Americas to suggest candidate foundation genera in Northern Hemisphere forests. Using the most stringent criteria, only two species of Acer, the canopy tree Acer ukurunduense and the shrubby treelet Acer barbinerve, were identified in temperate plots as candidate foundation species. Using more relaxed criteria, we identified four times more candidate foundation species in temperate plots (including species of Acer, Pinus, Juglans, Padus, Tilia, Fraxinus, Prunus, Taxus, Ulmus, and Corlyus) than in (sub)tropical plots (the shrubs or treelets Aporosa yunnanensis, Ficus hispida, Brassaiopsis glomerulata, and Orophea laui). Species diversity of co-occurring woody species was negatively associated with basal area of candidate foundation species more frequently at 5- and 10-m spatial grains (scale) than at a 20-m grain. Conversely, Bray-Curtis dissimilarity was positively associated with basal area of candidate foundation species more frequently at 5-m than at 10- or 20-m grains. Using either stringent or relaxed criteria supported the hypothesis that foundation species are more common in mid-latitude temperate forests. Comparisons of candidate foundation species in Chinese and North American forests suggest that Acer be investigated further as a foundation tree genus.
DOI: 10.15468/ry876r
title: Disentangling the Pelomedusa complex using type specimens and historical DNA (Testudines: Pelomedusidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Fritz, Uwe, Petzold, Alice, Kehlmaier, Christian, Kindler, Carolin, Campbell, Patrick, Hofmeyr, Margaretha D., Branch, William R. (2014): Disentangling the Pelomedusa complex using type specimens and historical DNA (Testudines: Pelomedusidae). Zootaxa 3795 (5): 501-522, DOI: http://dx.doi.org/10.11646/zootaxa.3795.5.1
DOI: 10.5281/zenodo.5082863
title: JWST MIRI MRS dataset

description: These are x1d test files for the JWST's MIRI MRS mode. They are used by specutils' unit tests to test the reader code.
DOI: 10.5281/zenodo.5082862
title: JWST MIRI MRS dataset

description: These are x1d test files for the JWST's MIRI MRS mode. They are used by specutils' unit tests to test the reader code.
DOI: 10.5281/zenodo.5082907
title: elloza/SLR-Context-Aware-Recommenders-Music-Domain: v1.0

description: Article: Context-Aware Recommender Systems in the Music Domain: A Systematic Literature Review
DOI: 10.5281/zenodo.5082906
title: elloza/SLR-Context-Aware-Recommenders-Music-Domain: v1.0

description: Article: Context-Aware Recommender Systems in the Music Domain: A Systematic Literature Review