cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2dmsnh
title: CCDC 2223557: Experimental Crystal Structure Determination

description: Related Article: Aya Yoshimura, Moeko Yoshinouchi, Keisuke Hemmi, Yuto Aso, Ryosuke Utsumi, Takashi Shirahata, Masaru Yao, Yohji Misaki|2023|New J.Chem.|47|11760|doi:10.1039/D3NJ00289F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/nkb85fgyvp.1
title: Dataset for How far have we come and where should we go after 30+ years of research on Africa’s emerging equity markets? 

description: This dataset is used to perform a systematic literature review and a bibliometric network analysis of studies on African financial markets from 1992 to 2021. We began by identifying the appropriate string of keywords. We identified and agreed to use the following keywords string for the search: “African market”, African stock markets”, African equity markets”, “African capital market”, “African financial market”, “African foreign exchange market”, “African exchange market”, “common stocks” and “African”. These keywords were searched in the Title, Abstract or Keywords (TAK) functionality of Scopus and they resulted in 321 hits as of March 10, 2022. We then apply two main quality thresholds, namely, subject area and language restrictions. We restricted the subject area to “Economics and Finance”, while we set the language to “English”. As we are interested in knowing the trajectory of the 30-year literature on African financial markets, we set limit on the “end date” to 2021 as well as “document type” to journal articles. These restrictions resulted in 198 relevant articles for download for the bibliometric analysis.
DOI: 10.5281/zenodo.7953836
title: Data for: Engineering tRNA abundances for synthetic cellular systems

description: Data for publication:<strong> Engineering tRNA abundances for synthetic cellular systems</strong> <strong>Abstract</strong> Routinizing the engineering of synthetic cells requires specifying determining beforehand how many of each molecule are needed. First-principles tools for specifying molecular abundances enabling whole-cell synthetic biology are missing. We use a colloidal dynamics simulator to make predictions for how tRNA abundances impact protein synthesis rates. We use rational design and direct RNA synthesis to make 21 synthetic tRNA surrogates from scratch. We use evolutionary algorithms within a computer aided design framework to design engineer translation systems predicted to work faster or slower depending on tRNA abundance differences. We build and test the so-specified synthetic systems and find that qualitative agreement between expected and observed systems performance matchqualitatively match. First-principles modeling combined with bottom-up experiments can help molecular-to-cellular scale synthetic biology realize “design, build, work” frameworks that transcend tinker-and-test. <strong>Data description</strong> The data here consists of (1) All Colloidal Smoldyn & CD-CAD simulation input parameter and output files & (2) experimental data used for the associated publication. Simulation data was produced using Colloidal Dynamics modeling and Colloidal Dyamics-CAD (CD-CAD) as described in the associated manuscript. Data folders should be used directly with modeling and analysis code provided on Github: https://github.com/EndyLab/tRNACAD.
DOI: 10.5281/zenodo.7953835
title: Data for: Engineering tRNA abundances for synthetic cellular systems

description: Data for publication:<strong> Engineering tRNA abundances for synthetic cellular systems</strong> <strong>Abstract</strong> Routinizing the engineering of synthetic cells requires specifying determining beforehand how many of each molecule are needed. First-principles tools for specifying molecular abundances enabling whole-cell synthetic biology are missing. We use a colloidal dynamics simulator to make predictions for how tRNA abundances impact protein synthesis rates. We use rational design and direct RNA synthesis to make 21 synthetic tRNA surrogates from scratch. We use evolutionary algorithms within a computer aided design framework to design engineer translation systems predicted to work faster or slower depending on tRNA abundance differences. We build and test the so-specified synthetic systems and find that qualitative agreement between expected and observed systems performance matchqualitatively match. First-principles modeling combined with bottom-up experiments can help molecular-to-cellular scale synthetic biology realize “design, build, work” frameworks that transcend tinker-and-test. <strong>Data description</strong> The data here consists of (1) All Colloidal Smoldyn & CD-CAD simulation input parameter and output files & (2) experimental data used for the associated publication. Simulation data was produced using Colloidal Dynamics modeling and Colloidal Dyamics-CAD (CD-CAD) as described in the associated manuscript. Data folders should be used directly with modeling and analysis code provided on Github: https://github.com/EndyLab/tRNACAD.
DOI: 10.17632/p99cymhxcp.1
title: Constraints to sustainable livelihood of women farmers and fishers in rural areas in the Niger Delta region of Nigeria

description: The research showed the constraints faced by rural women of the Ijaw ethnic extraction engaged in farming and fishing in the Niger Delta region of Nigeria. These constraints were identified as critical impediments to traditional livelihood sustainability in the area. The primary constraints faced by fishers are pollution of the rivers from crude oil spills, limited access to funds and extension services, and insecurity from raids along the creeks by sea pirates/ robbers. The farmers were faced with inadequate funds,  land, and extension services. The SPSS file uploaded here contains collated data from semi-structured interview schedules administered to farmers and fishers in the study area. Most of the variables are labeled except for multiple response variables. These multiple response variables were given separate columns for each answer option or response and uniform prefixes to responses from the same group.   The multiple response variables are numeric. They include 1 representing checked option and 0 representing unchecked option, and blank for missing values. The first multiple-response variable is on constraints that impede the women from ascertaining expected output. They include Constrain_oilspill (crude oil spill in rivers), Constrain_weather (frequent and intense rain),  Constrain_land (inadequate farmland or fish pond sites for fishers), Constrain_plantgrowth (poor plant growth from soil infertility, pests, and plant diseases), Constrain_old_poorhealth (old age and poor health), etc. The second is on the source of extension information. They include Extension_info_source_ExtAgents (extension agents), Extension_info_source_Media (internet, radio, television, etc.), Extension_info_source_Community_group (other groups aside cooperatives cultural dance, age grades or religious groups), etc. The third is on sources of capital to fund their farming or fishing operations. They include Capital_Source_Self (personal savings), Capital_Source_Private_loans (loans from private individuals), etc. The fourth concern factors hindering them from expanding their operations and increasing production. They include Expansion_constrain_time ( no free time), Expansion_constrain_insecurity (sea pirates/robbers), Expansion_constrain_support (inadequate free labour from family and friends), etc. The fifth one is on the title held on Farmlands for farmers only.  They include Title_0n_Land_Collateral (land held as collateral for the loan given),  Title_0n_Land_Patrilineal_link (land allocated annually to wives and daughters of the community), etc.  The sixth and final one is on assets they would like to acquire if given the opportunity. They include AssetsDesired_Aquaculture_fishfarming (setup aquaculture business or fish farms),  AssetsDesired_Other_Tools_Inputs_safetyGears (tools like fishing nets, baskets, inputs like fertilizers, herbicide, seedlings),  AssetsDesired_NonAgric_Business (hair salon, restaurants), etc.
DOI: 10.17632/63wx678cp8.1
title: Local anesthetic wound infiltration, transversus abdominis plane block, and intramuscular electrical stimulation in patients undergoing pancreaticoduodenectomy: a randomized controlled trial

description: Can four-quadrant transversus abdominis plane block and needle electrical twitch and intramuscular electrical stimulation provide more effective analgesia in patients undergoing pancreaticoduodenectomy?
This prospective, single-blinded, randomized controlled trial revealed that four-quadrant transversus abdominis plane block and needle electrical twitch and intramuscular electrical stimulation provide more effective analgesia and increased functional recovery than local wound infiltration in patients undergoing pancreaticoduodenectomy.
Our findings support the implementation of these procedures in the enhanced recovery after surgery pathways for patients undergoing open PD.
This is the data file for this investigation.
DOI: 10.17632/kfdxbzwhfj.1
title: A study of "Super-resolution proximity labeling reveals antiviral protein network and its structural changes against SARS-CoV-2 viral proteins". Lee et al.

description: SARS-CoV-2 replicates in human cells by interacting with host factors following infection. To understand the virus and host interactome, proximity, we introduce a super-resolution proximity labeling (SR-PL) method with “plug and playable” PL enzyme, TurboID-GBP (GFP binding protein) and we apply it for interactome mapping of SARS-CoV-2 ORF3a and M, which generates highly perturbed ER structures. Through SR-PL analysis of the biotinylated interactome, 224 and 272 peptides are robustly identified as ORF3a and M interactomes, respectively. Within the ORF3a interactome, RNF5 co-localizes with ORF3a and generates ubiquitin modifications of ORF3a that can be involved in protein degradation. We also observe that the SARS-CoV-2 infection rate is efficiently reduced by the overexpression of RNF5 in host cells. The interactome data obtains using the SR-PL method are presented in https://sarscov2.spatiomics.org. We hope that our method will contribute to revealing virus–host interactions of other viruses in an efficient manner.
DOI: 10.17632/bm2jgksh68.1
title: supplementary materials for GCA

description: supplementary materials for GCA
DOI: 10.17632/j2pg5xzv7n.1
title: SRQR CHECKLIST  Impact of COVID-19 on university students, Psychology, Behavior, and Infrastructure: The Case of Ecuador.

description: SRQR Checklist  for Reporting guidelines
DOI: 10.17632/pps4d75ntr.1
title: Time series data of force and frequency of rotation for an undershot water wheel

description: This is the raw time series data from a custom force measurement system using Arduino. It provides force outputs (in grams) of a load cell connected to a DC motor acting as a small dynamometer for determining power characteristics of a small undershot water wheel in an experimental water tunnel. It also provides frequency data by capturing data for each rotation of the turbine using a magnet and Hall effect sensor. This data is processed using the Matlab script as detailed below and in the file.

Some notable findings include Cp-TSR curves for a number of blade depths and velocities, confirmation that the power produced by an undershot water wheel is proportional to both the depth ratio squared and the velocity cubed, as well as the linearity of torque vs. TSR.
DOI: 10.17632/pps4d75ntr.2
title: Time series data of force and frequency of rotation for an in-stream water wheel

description: This is the raw time series data from a custom force measurement system using Arduino. It provides force outputs (in grams) of a load cell connected to a DC motor acting as a small dynamometer for determining power characteristics of a small in-stream water wheel in an experimental water tunnel. It also provides frequency data by capturing data for each rotation of the turbine using a magnet and Hall effect sensor. This data is processed using the Matlab script as detailed below and in the file.

Some notable findings include Cp-TSR curves for a number of blade depths and velocities, confirmation that the power produced by an undershot water wheel is proportional to both the depth ratio squared and the velocity cubed, as well as the linearity of torque vs. TSR.
DOI: 10.17632/jrgd6rvpbs.1
title: Income Advantage of Crop Diversification over Mono-crop Practices

description: A metadata on income advantage of crop diversification varieties over mono-crop varieties. The income data were collected for both the cropping patterns of mono crop and diversified crop patterns at global scale. For the in come advantage, the statistical significance of income of the crop diversification was coded as 1, statistically insignificant income of crop diversification was coded as 0. In the presence of explicit information or discussion on influencing factors of crop diversification such as farm size, soil fertility, land use efficiency, accessed credit facility, resiurce adequacy, cost of production, certified seed  / seed, fertiliser / pesticide, irrigation facility, efficient water use, labour engagement / manpower, shifting to their crops during monsoons, time availability, and price are considered as the variables.  Those data are in the form of binary data (availability of variable content, yes - 1; unavailability of variable content, no -0). The raw data was given in CSV format.
DOI: 10.17632/vf7ss82bxf.1
title: Superpower of intelligence

description: Intelligence is power and becoming smarter makes us more powerful than before, and the solution is artificial intelligence. The singularity of artificial intelligence makes us progress and contains many national interests, and governments "in this article, the Chinese government" should focus on the project.  Invest in the so-called singularity of artificial intelligence. Any government that achieves this technology sooner will become a global leader, and this technology also has many economic benefits.
DOI: 10.17632/5hk4c5t236.1
title: Expression of E. coli FimH Enhances Trafficking of an Orally Delivered Lactobacillus acidophilus Vaccine to Immune  Inductive Sites via Antigen-Presenting Cells Flow Data

description: Manuscript Raw Data.
DOI: 10.25345/c58c9rf04
title: MassIVE MSV000092284 - Loss of Kmt2c or Kmt2d drives brain metastasis via KDM6A-dependent upregulation of MMP3
title: Histone lysine methyltransferases KMT2C and KMT2D are among the most commonly mutated genes in the highly metastatic TNBC subtype of breast cancer. However, it is not known if mutations of either of these genes similarly effect epigenomic and transcriptomic landscape or if a specific downstream target might influence metastases. Here, we generated heterogenous Kmt2c or Kmt2d KO murine TNBC cell lines side-by-side and performed in vivo metastases assay in syngeneic immunocompetent mice. Deficiency for either Kmt2c or Kmt2d, both, induced brain metastases from formerly non-metastatic cells. scRNAseq showed activation of pro-inflammatory pathways but conversely also increase of immune checkpoint blocking genes. Interestingly, histone mass spectrometry revealed changes of H3K27 but not the main substrate H3K4. However, ChIPseq for both, H3K4 and H3K27 modifications showed significant changes compared to wildtype cells. Strikingly, genome occupancy of H3K27me3 was reduced while H3K27 demethylase KDM6A was enriched on genomes of KO cells. Integration with gene expression data revealed significant correlations with histone and KDM6A ChIPseq, identifying them as a main driver of Kmt2c or Kmt2d KO-specific gene regulation. Although our datasets revealed more unique than shared signatures, we found Mmp3 being a common target upon Kmt2c or Kmt2d KO. Indeed, downregulation of Mmp3 reversed induction of Kmt2c and Kmt2d KO-dependent brain metastases. Finally, we found that Kdm6a knockdown reduces Mmp3 levels, again, leading to reduction of brain metastases of Kmt2c or Kmt2d KO cells.
DOI: 10.17632/3zkcvybvkz.1
title: Clinical and sociodemographic data on congenital syphilis cases, Brazil, 2013-2021

description: This data set presents clinical and sociodemographic data regarding antenatal care, pregnant women's outcomes, and their children's Venereal Disease Research Laboratory (VDRL) test results, which is a screening test for congenital syphilis at childbirth, from the cities served by the Mãe Coruja Pernambucana Program (PMCP) in the State of Pernambuco, Brazil, between the years of 2013 and 2021. There are 41,762 records and 26 attributes in the data set, including 826 positive cases and 40,936 cases of congenital syphilis.

The PMCP is a social program created by the Brazilian government of the state of Pernambuco that aims to offer support to pregnant women before and after the birth of their children through Sistema Único de Saúde (SUS), the Brazilian public healthcare system, monitoring the evolution of children up to the age of 5 years and ensuring their healthy and harmonious development during the first years of life.

This data set contains two CSV files: the "data_set.csv" file contains the pre-processed data set, and the "attributes.csv" file contains information about each attribute.
DOI: 10.17632/3h5sktz45k.1
title: Datos clínicos y epidemiológicos de pacientes con Leishmaniasis cutánea Portoviejo, Manabi 2017-2021

description: Base de datos que contiene información sobre la presentación clínica y epidemiológica de 255 personas (casos) diagnosticados/confirmados con leishmaniasis cutánea, atendidos en las Unidades de la Red Pública de Salud y notificados en el Sistema Integrado de Vigilancia Epidemiológica (SIVEALERTA) del cantón Portoviejo, durante el periodo 2017-2021.
DOI: 10.17632/vgnw34f2hj.1
title: Psychological Impact of Covid-19 Pandemic in Brazil: a Systematic Review and Network Analysis

description: Psychological Impact of Covid-19 Pandemic in Brazil: a Systematic Review and Network Analysis
DOI: 10.17632/dxyyhh54wb.1
title: Public expenditure and economic model in Colombia

description: 
Este DataSet contiene articulos de apoyo para el Curso de Gestion Pública -  Programa de Derecho
DOI: 10.17632/k66kr79wzg.1
title: Machine Learning Techniques in Optical Networks: A Systematic Mapping Study

description: This repository contains the data extracted from the papers included in the systematic literature mapping of ML techniques for solving a set of reported problems related to the operation of optical networks as well as the information obtained throughout the study. In this way we hope to facilitate replication of the study if necessary.
DOI: 10.17632/79tc545wyp.1
title: Mechanisms of insertions at a DNA double strand break

description: Mechanisms of insertions at a DNA double strand break
https://doi.org/10.1016/j.molcel.2023.06.016
DOI: 10.17632/krfr9n6233.1
title: The default and directed pathways of hepatoblast differentiation involve distinct epigenomic mechanisms. Yang et al.

description: The default and directed pathways of hepatoblast differentiation involve distinct epigenomic mechanisms
DOI: 10.17632/dc4jp2pc7f.1
title: Pink pepper phenological stages

description: This data set is intended for the task of determining the phenological stages of pink pepper ripening. There are 4 versions of the dataset, consisting of 805, 2415, 1941 and 646 photos of the fruits, respectively. The fruits are classified as "Maturing", "Ripe" or "Green".
All datasets were selected, cleaned and organized.
DOI: 10.17632/dc4jp2pc7f.2
title: Pink pepper phenological stages

description: This dataset is intended for the task of determining the phenological stages of pink pepper ripening. There are 4 versions of the dataset, consisting of 805, 2415, 1941 and 646 photos of the fruits, respectively. The fruits are classified as "Maturing", "Ripe" or "Green".
All datasets were selected, cleaned and organized.
DOI: 10.17632/khdmjd85w3.1
title: Geological data along the Irtysh Fault (Central Asia)

description: This dataset supports the submitted article "First structural constraints on the collision between the Chinese Altai and the West Junggar (Central Asia): implications for arc-arc collision in 4D". It includes a kmz file to show major lithological units and structural patterns in the study area (Data Set 1), and geochronological and Hf isotope data (Data Set 2 and Data Set 3).
DOI: 10.17632/khdmjd85w3.2
title: Geological data along the Irtysh Fault (Central Asia)

description: This dataset supports the submitted article "First structural constraints on the collision between the Chinese Altai and the West Junggar in Central Asia: implication for deformation response and geodynamic evolution of arc-arc collision". It includes a kmz file to show major lithological units and structural patterns in the study area (Data Set 1), and geochronological and Hf isotope data (Data Set 2 and Data Set 3).
DOI: 10.17632/t79694pykj.1
title: Synaptic devices for simulating brain processes in visual-information perception to persisting memory through attention mechanisms

description: 1. Threshold voltage shift according to various stimulus
DOI: 10.17632/hpfxz2pyz6.1
title: Supplemental Table 1: MMS specific CPT codes with descriptions 

description: MMS specific CPT codes with descriptions
DOI: 10.17632/tk2c9fn39b.1
title: Raw data for "Quantifying the Extent of Authigenic Carbonate Formation in Marine Sediments through a Correlation between Carbonate Precipitation Rate and Sulfate Flux"

description: Porewater Ca and Mg concentrations as well as calculated fluxes of Ca, Mg, SO42-, DIC, and authigenic carbonate precipitaion.
DOI: 10.17632/5mjk4ygwsw.1
title: 16S rRNA Metagenomics Data on the Bacterial Communities in Poring Hot Spring, Sabah

description: The taxonomic profile and abundance data of bacteria in water and sediment samples collected from Poring Hot Spring in Ranau, Sabah, Malaysia were obtained by sequencing the V3-V4 region of the rRNA gene using the Hiseq Illumina sequencing platform and various bioinformatic tools.
DOI: 10.17632/v5dcbrmt32.1
title: Digital literacy effect on the academic performance of students at higher education level

description: The purpose of the current study was to explore the effect of digital literacy on academic performance of the students at higher education level. The study was mixed method and data were gathered with a questionnaire & semistructured interviews. The validity and reliability of the scales were ensured through experts’ opinion, pilot testing and Croanbach Alpha score. The population comprised the students of MS/M. Phil & Ph. D. A sample of 800 students was selected randomly from 10 Universities. The statistical tests like mean, standard deviation and correlation were used. Results revealed that digital literacy had significant effects on communication skills, research skills and confidence of the students and insignificant effect on students’ CGPA.
DOI: 10.11570/23.0012
title: Global Extinction: Gemini North and South GMOS Combined Photometry Relative to the Gaia Catalog, and Long-term Atmospheric Change
DOI: 10.17632/xdhxyk6yvh.1
title: Data for: Silurian-Devonian lithospheric thinning and thermally softening along the northern margin of the Tarim Craton: geological mapping, petro-structural analysis and geochronological constraints

description: The datasets contain two supplemental tables (Table S1 to S2). Table S1 show the LA-ICP-MS zircon and monazite U-Pb data for the key samples of Korla area, NE Tarim Craton. Table S2 display the Biotite 40Ar/39Ar stepwise heating data of mylonitic granite from the Korla area, NE Tarim Craton.