cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.y8xwwp
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-123.3651217403063 41.763193832565776, -123.36851257056271 41.76255188484953, -123.3716708578875 41.761426888258185, -123.37447517101926 41.75986210694991, -123.37681771457646 41.75791771308869, -123.37860847571086 41.75566846859861, -123.37977868175174 41.753200846020285, -123.38028343619754 41.75060970003967, -123.38010343280915 41.747994618420414, -123.37924568365013 41.745456093156925, -123.37774323521165 41.743091659254254, -123.37565388572348 41.74099214942186, -123.37305795487983 41.73923820816785, -123.37005519307323 41.7378971985327, -123.36676094953737 41.737020619443506, -123.3633017464254 41.7366421320137, -123.35981042786078 41.73677626981924, -123.35642106867327 41.737417882128646, -123.35326383636725 41.73854233121749, -123.35046000158702 41.74010643627989, -123.34811728688952 41.742050128104204, -123.34632573117754 41.74429875164501, -123.34515422808906 41.74676592889568, -123.34464787158934 41.74935687296728, -123.34482621181579 41.75197202683504, -123.34568248990597 41.75451088750532, -123.34718388332563 41.75687586891045, -123.34927275446213 41.75897605498872, -123.35186885644589 41.76073069827968, -123.35487241283 41.76207232886408, -123.35816795341347 41.76294935328101, -123.36162875857947 41.76332804261982, -123.3651217403063 41.763193832565776))",
 "Year is one of (2019, 2020, 2021, 2022, 2023, 2024, 2025)",
 "KingdomKey is one of (Animalia, Fungi, Plantae)"
 ]
}

 The dataset includes 48 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005627-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/m6s45bbwgb
title: Hepcidin Alleviates Retinopathy of Prematurity by Regulating Oxidative Stress and Angiogenesis

description: We found that under hypoxic conditions, human retinal microvascular endothelial cells (hRMECs) exhibited oxidative stress and displayed excessive proliferation during short-term hypoxia, while hepcidin alleviated both the oxidative stress levels and abnormal proliferation in hypoxia-exposed hRMECs.
DOI: 10.17632/m6s45bbwgb.1
title: Hepcidin Alleviates Retinopathy of Prematurity by Regulating Oxidative Stress and Angiogenesis

description: We found that under hypoxic conditions, human retinal microvascular endothelial cells (hRMECs) exhibited oxidative stress and displayed excessive proliferation during short-term hypoxia, while hepcidin alleviated both the oxidative stress levels and abnormal proliferation in hypoxia-exposed hRMECs.
DOI: 10.17632/4v38m5wpcj.1
title: Bio-statistical Analysis of Orexinergic Receptor Interactions Data Set

description: Data set generated in the conduct of research involving plant phytochemicals and orexin receptors
DOI: 10.17632/4v38m5wpcj.2
title: Bio-statistical Analysis of Orexinergic Receptor Interactions Data Set

description: This dataset contains molecular docking results of 124 neem (Azadirachta indica) phytochemicals against human orexinergic receptors OX2 (PDB ID: 4S0V) and OX1 (PDB ID: 6V9S), alongside reference ligands Suvorexant (4S0V) and [(2S)-2-[(2S)-butan-2-yl]-4-(5-chloro-1,3-benzoxazol-2-yl)-1,4-diazepan-1-yl][5-methyl-2-(2H-1,2,3-triazol-2-yl)phenyl]methanone (6V9S). Docking was performed using AutoDock Vina, yielding binding energies (kcal/mol) for each compound-receptor pair against human orexinergic receptors OX2 (PDB ID: 4S0V) and OX1 (PDB ID: 6V9S), alongside reference ligands Suvorexant (4S0V) and [(2S)-2-[(2S)-butan-2-yl]-4-(5-chloro-1,3-benzoxazol-2-yl)-1,4-diazepan-1-yl][5-methyl-2-(2H-1,2,3-triazol-2-yl)phenyl]methanone (6V9S).
DOI: 10.17632/87js77z43z.1
title: Patterns and Trends in Antimalarial Dispensing Practices in Ghana: A Retrospective Analysis of Outreach Training and Supportive Supervision Data (2018-2022)

description: This dataset consists of key variables related to the delivery of pharmaceutical care to malaria patients collected during Ghana's annual Outreach Training and Supportive Supervision (OTSS) visits from 2018 to 2022. It includes 7,193 records from 4,471 health facilities, with 2,722 repeated measurements over the years. It was collected using the EDS (Electronic Data System) application. The variables include regions (all 16 administrative regions in Ghana), year (2018, 2019, 2020, and 2022), level of service delivery (Community-based Health Planning and Service compounds, health centers, clinics, maternity homes, hospitals), and health facility codes. Other variables include three observations of each of the following practices at the dispensing point: labeling of dispensed antimalarials, explaining prescription instructions, assessing the client’s understanding of prescription instructions, explaining side effects and directly observing the first dose of antimalarial for children under five.
DOI: 10.17632/nb8sbx7f69.1
title: Solid Phase Condensates RNASeq and HiC

description: This repository contains raw imaging files and analysis code associated with the following study:

Solid phase transitions as a solution to the genome folding paradox


Joan Pulupa1,2, *, Natalie G. McArthur3, *, Olga Stathi2, Miao Wang1, 2, Marianna Zazhytska1, 2, Isabella D. Pirozzolo4, Ahana Nayar5, Lawrence Shapiro1, 2, and Stavros Lomvardas1, 2, & 

1 Department of Biochemistry and Molecular Biophysics, Vagelos College of Physicians and Surgeons, New York, NY 10032, USA

2 Mortimer B. Zuckerman Mind, Brain, and Behavior Institute, Columbia University, New York, NY 10027, USA

3 Department of Biological Sciences, Columbia University, New York, NY 10027, USA

4 Medical Scientist Training Program, Vagelos College of Physicians and Surgeons, New York, NY 10032, USA

5 Barnard College, New York, NY, 10025, USA

* These two authors contributed equally to this work 

& Corresponding author
 
Abstract 
Ultra long-range genomic contacts, which emerge as prominent components of neuronal genome architecture1-3, constitute a biochemical enigma. This is because regulatory DNA elements make selective and stable contacts with DNA sequences located hundreds of Kbs away, instead of interacting with proximal sequences occupied by the same exact transcription factors (TFs)1,4. This is exemplified in olfactory sensory neurons (OSNs), where only a fraction of Lhx2/Ebf1/Ldb1-bound sites interact with each other, converging into highly selective multi-chromosomal enhancer hubs5. To obtain biochemical insight to this process, we assembled OR enhancer hubs in vitro with recombinant proteins and enhancer DNA. Cell-free enhancer hub reconstitution revealed that OR enhancers form nucleoprotein condensates with unusual, solid-like characteristics. Assembly of these solid condensates is orchestrated by specific DNA motifs enriched in OR enhancers, which likely impose distinct homotypic properties to their resident Lhx2/Ebf1/Ldb1 complexes. Single molecule tracking and pulse/chase experiments in vivo confirm that Lhx2 and Ebf1 assemble OR transcription-competent condensates with solid properties in OSN nuclei, under physiological protein concentrations. Thus, DNA sequence-influenced homophilic nucleoprotein interactions generate new types of biomolecular condensates, which may provide a generalizable explanation for the stability and specificity of long-range genomic contacts across cell types.
DOI: 10.17632/kj2kbx42f8.1
title: Price Transparency Supplementary Materials

description: Additional information on methods process and statistical analysis
DOI: 10.15468/dl.48d6nr
title: Occurrence Download

description: A dataset containing 6841 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cerdocyon thous (Linnaeus, 1766)",
 "Year 2000-2025"
 ]
}

 The dataset includes 6841 records from 135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005629-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/xdjn6jnzjn.1
title: "Son las mismas condiciones, nada especial”: experiencia de trabajadores con discapacidad. Base de datos

description: Este dataset contiene las transcripciones anonimizadas de entrevistas en profundidad realizadas a cinco trabajadores con discapacidad vinculados al sector formal de la economía en Cali, Colombia. El objetivo del estudio fue comprender las experiencias laborales de estas personas, explorando cómo perciben su entorno laboral, las adaptaciones realizadas (o la falta de estas) y sus estrategias de integración.

Características del dataset:

Formato: Texto plano, organizado por pregunta y respuesta.
Idioma: Español.
Participantes: 3 hombres y 2 mujeres (1 hombre con discapacidad visual y 4 personas con discapacidad motora), seleccionados mediante muestreo propositivo.
Estructura de la información: Las entrevistas fueron estructuradas para abordar los existenciales fenomenológicos (cuerpo, espacio, tiempo y relaciones humanas) y la percepción de las condiciones laborales.
Anonimización: Todos los datos personales y cualquier información que pudiera identificar a los participantes han sido eliminados para garantizar la confidencialidad.
DOI: 10.17638/datacat.liverpool.ac.uk/3001
title: Community Health and Wellbeing Worker Process Evaluation Dataset
DOI: 10.15468/dl.9ggrer
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-123.3651217403063 41.763193832565776, -123.36851257056271 41.76255188484953, -123.3716708578875 41.761426888258185, -123.37447517101926 41.75986210694991, -123.37681771457646 41.75791771308869, -123.37860847571086 41.75566846859861, -123.37977868175174 41.753200846020285, -123.38028343619754 41.75060970003967, -123.38010343280915 41.747994618420414, -123.37924568365013 41.745456093156925, -123.37774323521165 41.743091659254254, -123.37565388572348 41.74099214942186, -123.37305795487983 41.73923820816785, -123.37005519307323 41.7378971985327, -123.36676094953737 41.737020619443506, -123.3633017464254 41.7366421320137, -123.35981042786078 41.73677626981924, -123.35642106867327 41.737417882128646, -123.35326383636725 41.73854233121749, -123.35046000158702 41.74010643627989, -123.34811728688952 41.742050128104204, -123.34632573117754 41.74429875164501, -123.34515422808906 41.74676592889568, -123.34464787158934 41.74935687296728, -123.34482621181579 41.75197202683504, -123.34568248990597 41.75451088750532, -123.34718388332563 41.75687586891045, -123.34927275446213 41.75897605498872, -123.35186885644589 41.76073069827968, -123.35487241283 41.76207232886408, -123.35816795341347 41.76294935328101, -123.36162875857947 41.76332804261982, -123.3651217403063 41.763193832565776))",
 "Year is one of (2019, 2020, 2021, 2022, 2023, 2024, 2025)",
 "KingdomKey is one of (Animalia, Fungi, Plantae)"
 ]
}

 The dataset includes 48 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005630-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x3t48d
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-123.3651217403063 41.763193832565776, -123.36851257056271 41.76255188484953, -123.3716708578875 41.761426888258185, -123.37447517101926 41.75986210694991, -123.37681771457646 41.75791771308869, -123.37860847571086 41.75566846859861, -123.37977868175174 41.753200846020285, -123.38028343619754 41.75060970003967, -123.38010343280915 41.747994618420414, -123.37924568365013 41.745456093156925, -123.37774323521165 41.743091659254254, -123.37565388572348 41.74099214942186, -123.37305795487983 41.73923820816785, -123.37005519307323 41.7378971985327, -123.36676094953737 41.737020619443506, -123.3633017464254 41.7366421320137, -123.35981042786078 41.73677626981924, -123.35642106867327 41.737417882128646, -123.35326383636725 41.73854233121749, -123.35046000158702 41.74010643627989, -123.34811728688952 41.742050128104204, -123.34632573117754 41.74429875164501, -123.34515422808906 41.74676592889568, -123.34464787158934 41.74935687296728, -123.34482621181579 41.75197202683504, -123.34568248990597 41.75451088750532, -123.34718388332563 41.75687586891045, -123.34927275446213 41.75897605498872, -123.35186885644589 41.76073069827968, -123.35487241283 41.76207232886408, -123.35816795341347 41.76294935328101, -123.36162875857947 41.76332804261982, -123.3651217403063 41.763193832565776))",
 "Year is one of (2019, 2020, 2021, 2022, 2023, 2024, 2025)",
 "KingdomKey is one of (Animalia, Fungi, Plantae)"
 ]
}

 The dataset includes 48 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005632-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yra6uz
title: Occurrence Download

description: A dataset containing 253 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Salix nigra Marshall"
 ]
}

 The dataset includes 253 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005633-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15102196
title: Versatile light curves templates of Cepheids. Multiband fitting of photometric time series

description: We provide here related data to Bras et al. 2025 (accepted for publication in A&A). We present the SPIPS output files with all data and models for the 75 stars in our gold sample. The files contain data collected from the literature and the modeled curve for radial velocities, effective temperatures, angular diameters and photometry in various passbands.

In addition, we provide the results of our Principal Component Analysis (PCA). This file contains information on the photometric filters used (central wavelength and extinction parameters), the principal components derived from the gold sample until the fourth component, and relations between period and coefficients associated to the PCA derived from gold and silver samples with their confidence intervals.
DOI: 10.5281/zenodo.15102197
title: Versatile light curves templates of Cepheids. Multiband fitting of photometric time series

description: We provide here related data to Bras et al. 2025 (accepted for publication in A&A). We present the SPIPS output files with all data and models for the 75 stars in our gold sample. The files contain data collected from the literature and the modeled curve for radial velocities, effective temperatures, angular diameters and photometry in various passbands.

In addition, we provide the results of our Principal Component Analysis (PCA). This file contains information on the photometric filters used (central wavelength and extinction parameters), the principal components derived from the gold sample until the fourth component, and relations between period and coefficients associated to the PCA derived from gold and silver samples with their confidence intervals.
DOI: 10.13145/bacdive151313.20230509.8.1
title: Lactobacillus paracasei

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive151313.20251217.10
title: Lactobacillus paracasei

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive151314.20241212.9.2
title: Burkholderia multivorans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive151314.20251217.10
title: Burkholderia multivorans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0139020.10fu
title: SH0139020.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive151315.20230509.8.1
title: Schaalia turicensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive151315.20251217.10
title: Schaalia turicensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0139021.10fu
title: SH0139021.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive151316.20241212.9.2
title: Facklamia ignava

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive151316.20251217.10
title: Facklamia ignava

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0139022.10fu
title: SH0139022.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive151317.20230509.8.1
title: Winkia neuii subsp. anitrata

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0139023.10fu
title: SH0139023.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive151317.20251217.10
title: Winkia neuii subsp. anitrata

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive151318.20230509.8.1
title: Psychrobacter phenylpyruvicus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0139024.10fu
title: SH0139024.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive151318.20251217.10
title: Psychrobacter phenylpyruvicus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.