cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5683/sp3/311arh
title: Functional traits of willow assemblage on contaminated soil, a phytoremediation mesocosm experiment

description: Ten functional traits and trace elements concentrations in aboveground and belowground tissues of three willow species and their assemblage (1 to 3 species). This repository contains the data and analysis script of the article: 'Trait-based models explain phytoremediation services of willow assemblages'.
DOI: 10.5683/sp3/dgjdje
title: Blockage Dynamics in sewer system

description: This dataset aims to investigate the dynamics of sewer blockages caused by wipes, including their probability of snagging and accumulation under different flow rates and sewer imperfection scenarios, as well as their dissipation rates in high-risk conditions. The scope includes raw data on snagging and accumulation and detailed measurements of cumulative dissipation and dissipation rates under varying conditions.
DOI: 10.5683/sp3/nreq7u
title: Investigating the Intellectual Bifurcation Between Feminist Theory and Sociology of Religious Leadership: Supplemental Materials

description: PRISMA diagram, codebook, and detailed search strategy.
description: Citation information, including a DOI, will be added following article publication.
DOI: 10.5683/sp3/vwmcy0
title: Surface Atmospheric Variables for the Evaluation of Winds (SAVE-Winds) catalog

description: &lt;p&gt;The Surface Atmospheric Variables for the Evaluation of Winds (SAVE-Winds) catalog includes a detailed set of hourly, near-surface atmospheric variables from both observations and simulations across 27 locations in North America from 2015 to 2020. The observational data is sourced from the AmeriFlux network, featuring direct measurements of sensible, latent, and momentum turbulent fluxes. Simulated data is generated using various configurations of the CRCM6/GEM5 model. The dataset includes 10-m wind speed, friction velocity, stability parameter, 2-m temperature, sensible and latent heat fluxes, surface pressure, and relative humidity.&lt;/p&gt; 

&lt;p&gt;Le catalogue des variables atmosphériques de surface pour l'évaluation des vents (SAVE-Winds) comprend un ensemble détaillé de variables atmosphériques horaires proches de la surface provenant à la fois d'observations et de simulations sur 27 sites en Amérique du Nord de 2015 à 2020. Les données d'observation proviennent du réseau AmeriFlux, qui comprend des mesures directes des flux turbulents sensibles, latents et de quantité de mouvement. Les données simulées sont générées à l'aide de diverses configurations du modèle CRCM6/GEM5. L'ensemble des données comprend la vitesse du vent à 10 m, la vitesse de frottement, le paramètre de stabilité, la température à 2 m, les flux de chaleur sensible et latente, la pression de surface et l'humidité relative.&lt;/p&gt;
description: Python
description: Numpy
description: AmeriFlux and CRCM6/GEM5 model.
description: The authors would like to thank Katja Winger, and Frédérik Toupin for maintaining a user-friendly local computing facility and for downloading and
preparing some of the precipitation datasets.
DOI: 10.5683/sp3/foqepf
title: Dataset for the study by Cayouette A, Cellard C, Fossard M, Knutsen D, Roy MA, Rancourt M, D’Amours S, Bourget R, Bolduc L, Achim AM. Being well understood and generating interest during verbal interactions: the role of theory of mind and clinical symptoms in people with schizophrenia spectrum disorders.

description: The Excel document contains all the variables used for the study by Cayouette A, Cellard C, Fossard M, Knutsen D, Roy MA, Rancourt M, D’Amours S, Bourget R, Bolduc L, Achim AM. A paper on that study has been submitted for publication, with the title: Being well understood and generating interest during verbal interactions: the role of theory of mind and clinical symptoms in people with schizophrenia spectrum disorders.
DOI: 10.5683/sp3/sb7txa
title: Instructions for the Storytelling in Sequence Task (STST) by Fossard, Achim et al.

description: The Storytelling in Sequence Task (STST) is a joint task allowing the production of narrative discourse. The STST was introduced in a paper by Fossard, Achim et al (2018) - see full reference below, and is also available in French under the name "Tâche de narration d'histoires en séquences (TNHS)".
&lt;/br&gt;&lt;/br&gt;
Here, we share the version of the task instructions that were translated and adapted in English by the team of Amélie Achim (Université Laval) in the context of a research project (the Mots+ project, by Lena Palanniyappan, Amélie Achim et al.).
&lt;/br&gt;&lt;/br&gt;
The stimuli for the task, with the words in the images translated in English, can be accessed at: 
&lt;a href="https://doi.org/10.5281/zenodo.12633286 "&gt;https://doi.org/10.5281/zenodo.12633286&lt;/a&gt;.
&lt;/br&gt;&lt;/br&gt;
The original stimuli and instructions in French can be respectively accessed at: 
&lt;a href="https://doi.org/10.5281/zenodo.11544087"&gt;https://doi.org/10.5281/zenodo.11544087&lt;/a&gt; and &lt;a href="https://doi.org/10.5281/zenodo.12697758"&gt;https://doi.org/10.5281/zenodo.12697758&lt;/a&gt;.
&lt;/br&gt;&lt;/br&gt;
Reference for the task: 
&lt;/br&gt;&lt;/br&gt;

Fossard M, Achim AM (co-first authors), Roussier-Vercruyssen L, Gonzales S, Bureau A, Champagne-Lavau M. (2018). Referential choices in a collaborative storytelling task: Discourse stages and referential complexity matter. Frontiers in Psychology: Language Sciences, vol. 9, article 176. doi: 10.3389/fpsyg.2018.00176
DOI: 10.5683/sp3/tanjcp
title: Supplemental file: Reduced nephrin tyrosine phosphorylation enhances insulin secretion and increases glucose tolerance with age

description: Additional figures to show oral glucose tolerance tests at 16 weeks of age, and islet photos of aged nephrin-Y3F mice. For the manuscript: Reduced nephrin tyrosine phosphorylation enhances insulin secretion and increases glucose tolerance with age
DOI: 10.5683/sp3/r0kdhe
title: Use of native animal dung by an introduced species of dung beetle (Onthophagus nuchicornis)

description: Non-indigenous dung beetle (Coleoptera: Scarabaeoidea) species in North America are important contributors to ecosystem functions, particularly in pasture-based livestock systems. Despite the significant body of research surrounding non-indigenous (and often invasive) dung beetles in agricultural contexts, there has been minimal study concerning the impact of the competition that these species may have on indigenous dung beetle populations in natural environments. Here we examine the potential impact of introduced dung beetle Onthophagus nuchicornis on indigenous dung beetle populations via resource competition. Using a controlled laboratory experiment, we quantified how readily beetles could use dung from bobcat (Lynx rufus), red fox (Vulpes vulpes), moose (Alces alces), raccoon (Procyon lotor), and domestic sheep (Ovis aries). To determine the suitability of each dung type for reproduction, we measured offspring fitness, abundance, and development time.
DOI: 10.5683/sp3/gzndgw
title: Fully connected networks - 15000 synthesis samples

description: A synthetic fully connected neural networks dataset, generated with hyperparameters randomly sampled from predefined ranges. The dataset of ~15000 samples contains network configuration and FPGA synthesis data to train regression models for resource and latency estimates.
DOI: 10.5683/sp3/frjdpt
title: Datasets for "The multiple effects of the wasp Cotesia congregata, a parasitic manipulator, on the brain of its host, the caterpillar Manduca sexta."

description: Transcriptomic and Proteomic datasets and analysis from the paper "The multiple effects of the wasp Cotesia congregata, a parasitic manipulator, on the brain of its host, the caterpillar Manduca sexta. 
There are two excel spread sheets included.
DOI: 10.5683/sp3/jy2104
title: Models, Model Outputs and Processed Data for "Climate Change Alters Social-Ecological Trade-offs in Achieving Ocean Futures’ Targets"

description: This dataset contains the model output results from the article "Climate Change Alters Social-Ecological Trade-offs in Achieving Ocean Futures’ Targets." The results feature data from the East China Sea (ECS) and the Northern South China Sea (NSCS) under various climate scenarios—including no climate change, the RCP2.6 low-emission scenario, and the RCP8.5 high-emission scenario—and diverse policy objectives. These include outcomes from different economic and ecological strategies. For detailed information, please refer to the README file.
description: Abstract：

The effects of climate change on marine ecosystems are causing cascading impacts on livelihood, food security and culture through fisheries. Such impacts interact and exacerbate the effects of overfishing on marine social-ecological systems, complicating the rebuilding of ecosystems to achieve desirable and sustainable ocean futures. Developing effective pathways for ecosystem rebuilding requires consideration of the co-benefits and trade-offs between ecological and social dimensions and between fishing sectors. However, the effects of intensifying climate change on such co-benefits or trade-offs are yet to be well understood, particularly in regions where ecosystem rebuilding is urgently needed. We applied a numerical optimization routine to define the scope for improvement towards the Pareto-frontier for ecological robustness and economic benefits of the northern South China Sea (NSCS) and the East China Sea (ECS) ecosystems. These two ecosystems were used to represent over-exploited low- and mid-latitude systems, respectively, and the optimization aims to improve their status through fisheries management. We find that the ECS ecosystem has the possibility of increasing the economic benefits generated by the fisheries it supports under climate change by 2050 while increasing the uncertainty of achieving biodiversity objectives. Nevertheless, climate change is projected to reduce the scope to restore ecosystem structures and the potential economic benefits in the NSCS ecosystem. This study highlights the contrasting impacts of climate change on the co-benefits/trade-offs in ecosystem rebuilding and the benefits obtainable by different fishing sectors even in neighboring ecosystems. We conclude that consideration at the nexus of climate-biodiversity-fisheries is a key to developing effective ecosystem rebuilding plan
DOI: 10.5683/sp3/bzci1a
title: Underlying Data for "The Performance of Digital Technologies for Measuring Tuberculosis Medication Adherence: A Systematic Review"

description: Data retrieval for systematic review including: 
1) Analysis_Data.(Data from included studies used to generate the funnel plots in R)
2) Analytic_Code_R. (R code used to generate the funnel plots and binomial confidence intervals across all results)
3) Data extracted from included articles (The data extracted from all included articles and the bias assessment can be found in this file)
4) PRISMA checklist
5) Template data collection form
description: 1) Analysis_Data.tab (Data includes the published results of each included article in which the adherence results of the DAT were compared to the adherence results of a reference standard. The reference standard being one of urinalysis, pill count, or observed therapy)

2) Analytic_Code.R
The funnel plots were created using the R packages ‘meta’, ‘metafor’, ‘MKinfer’, ‘dplyr’, ‘rmeta’, ‘INLA’, and ‘na.tools’, while binomial confidence intervals were calculated using the ‘DescTools’ package. A funnel plot was created using the main result of each article to assess publication bias across all studies. To evaluate the publication bias per DAT, when applicable, a funnel plot was created using the main result of articles for 99DOTS and digital pillboxes separately. Binomial confidence intervals were calculated for all studies but only used in the manuscript when they were not included in the article’s results.

3) Data extracted from included articles.xlsx
The data extracted from all studies includes detailed information on bibliographic data and methods (i.e., study design, country of study, study setting , sample size, method of recruitment, objective, strengths, limitations and conclusion), detailed answers to the PICO question (i.e., population information, details of the intervention and reference standard, and the outcomes of sensitivity, specificity, positive predictive value, negative predictive value, accuracy, and the numbers of true and false positives and negatives), and the rank and reasoning of each question of the QUADAS-2 checklist per study.

4) PRISMA 2020 checklist

5) Template data collection form
DOI: 10.5683/sp3/akpaen
title: Replication Data for: Characterizing water level responses to barometric pressure fluctuations from seconds to days

description: 1) Raw RBR transducer files from RD-130, RD-77, RD-121, RD-45B, C-03 (water)

2) Raw RBR transducer files from RD-130, RD-08, RD-10 (air)

3) Well Details Table

4) Aerial imagery
DOI: 10.5683/sp3/6o4u6k
title: Replication Data for: Mechanistic Insights into Cyclodipeptide Formation by Cyclodipeptide Synthases: A Preliminary Exploration on Pathways and Catalytic Residues

description: This includes all geometries, transition states, and intermediates calculated in both the gas and solution phases that are discussed in the main article.
DOI: 10.5683/sp3/4zdpmn
title: VistaFormer: Simple Vision Transformers for Satellite Image Time Series Segmentation

description: The dataset includes trained models, training logs, and test results on PASTIS and MTLCC semantic segmentation benchmark datasets. Both benchmark datasets these models are trained on are crop-type classification benchmarks that use time series Sentinel data as inputs. The PASTIS benchmark covers agricultural land plots in France while the MTLCC benchmark covers agricultural land plots in Germany.

Code that accompanies these trained weights and records as well as code that can be used to transform benchmark inputs for use by the trained models can be found here: https://github.com/macdonaldezra/VistaFormer
description: Publication citation is forthcoming
DOI: 10.5683/sp3/pqdw90
title: Ontario Court of Appeal (ONCA) Corpus 2008-2021

description: The Court of Appeal of Ontario (ONCA) is the highest court of the Canadian province of Ontario, Canada. To improve the empirical study of the Court, we web scraped and curated the published decisions of the ONCA rendered between 2008-2021. We used natural language processing (NLP) to extract targeted meta data such as the names of the judges rendering the decision, the outcome of the decision and the legal field of concern in the decision. An accompanying paper explains the methodology in greater detail and answers a preliminary set of research question. This dataset contains the full text of 12667 decisions of the ONCA between 2008-2021 and its accompanying meta data. It was extracted from the ONCA website in 2022.
DOI: 10.5683/sp3/ba8ajc
title: Replication Data for: Slow Burn: Weak Energy Transition in a Growing Economy

description: Despite impressive recent gains in income (now classified by the World Bank as a ``high income country''), and access to alternative heating systems, Chileans continue to have amongst the highest levels of per-capita wood consumption in the world, with serious attendant health and environmental implications. In this paper, we estimate the income elasticity of the use of firewood as a primary residential heating system in Chilean households. Our estimate accounts for the country’s climatic, geographic, and socio-demographic variation; controls for multiple levels of fixed-effects and covariates; and accounts for selection---as some households choose no heating systems whatsoever. We find that an increase of income of 10\% decreases the probability of firewood use by about one-tenth of a percentage point, a statistically significant but economically trivial effect. This result, consistent across various robustness checks, provides evidence for an extremely weak income-based energy transition in Chile. It implies that passive environmental policy, expecting a reduction of firewood use exclusively from income growth will fail. If the Chilean government’s aim is to lower the detrimental health and environmental outcomes associated with firewood use, they will have to adopt more aggressive approaches.
description: Stata, 16
DOI: 10.5683/sp3/sdbo62
title: Replication Data for: GC×GC-TOFMS Analysis of Fecal Metabolome Stabilized Using an At-Home Stool Collection Device

description: Replication Data For: GC×GC-TOFMS Analysis of Fecal Metabolome Stabilized Using an At-Home Stool Collection Device

Abstract: Stool is a mixture of excrement, microbiota, enzymes, undigested material, and small molecules. Fecal metabolomics has gained interest recently, owing to advances in metabolomics and growing research into both the host’s physiology and the gut microbiome. One challenge with fecal metabolomics is preserving the sample integrity from collection until analysis, as the microbiota and enzymes continue to alter the metabolome following defecation. Currently, flash-freezing or lyophilization are utilized to prevent post-collection metabolome changes; however, this requires complex equipment and immediate processing, precluding the possibility for at-home sampling. Commercial devices containing stabilizing solvents have been developed to facilitate at-home collection, ambient transport, and sample storage. Here, we explore the efficacy of a commercially available stool collection device with a stabilization reagent tailored to fecal metabolomics. Stool samples from six donors were either processed post-collection or stored at room temperature for seven-days in the tube, with and without the stabilization reagent. Comprehensive two-dimensional gas chromatography time-of-flight mass spectrometry (GC×GC-TOFMS) untargeted metabolomics was utilized for analyzing extracted metabolites. Chemometric analysis was used to evaluate the performance of the device. We found that the device with the stabilization reagent minimized changes in the metabolite profile relative to unstabilized stool left at room temperature for one week.
description: Peak Tables are in .csv files, as both normalized and raw peak intensities.

Raw data files are stored as .smp files, and require LECO proprietary software to open. These files are in the following format:

YYYYMMDD_FML_ABC_X.smp

First 8 characters are data of analysis (YYYYMMDD), followed by initials of instrument operator (FML),

ABC is the sample code, where A is the donor, B represents the time point (0 = T0, 7 = S7, and U = U7). C represents the tube number (3 tubes per class).

X represents replicate aliquots of extract from each tube.
DOI: 10.5683/sp3/d7hmud
title: De Frond et al., 2024 Home Waste Audit Data

description: This is the supplementary data that goes along with De Frond et al., 2024 sharing results from our Home Waste Audit
DOI: 10.5683/sp3/tctdtd
title: Dataset for the article "Assessing the potential human health impacts of freshwater consumption: considering inequalities in water availability to assess the consequences of domestic water deprivation"

description: Dataset to download and use for generating the results of the article "Assessing the potential human health impacts of freshwater consumption: considering inequalities in water availability to assess the consequences of domestic water deprivation"
The data folder can be used with the following code : 
&lt;a href="https://github.com/LauraDebarre/Water_domestic_Human_health"&gt;https://github.com/LauraDebarre/Water_domestic_Human_health&lt;/a&gt;
DOI: 10.5683/sp3/j6zqm2
title: Replication Data for: Final report for Neudorff dry fiesta trial – Project # G19-05

description: This project compared liquid and dry formulations of Fiesta at varying rates on broadleaf weed populations common in lawn-height turfgrass. In addition, the study also provides information to the industry sponsor for registration purposes and for use in the Canadian market.
description: SAS, 9.4
description: Lyons' Lab Research Reports
DOI: 10.5683/sp3/eztjjg
title: Replication Data for: Baseline Spoofing Detection for Aircraft with Standard Navigation Hardware

description: This dataset contains GPS RINEX 3.04 format files for GPS observations made by the two receivers on the test vehicle, as well as those collected by the receiver monitoring the spoofing source, a text file containing the reference trajectory of the test vehicle, and the configuration file for RTKPOST used to process the two moving receivers as described in the paper: "Baseline Spoofing Detection for Aircraft with Standard Navigation Hardware,"
DOI: 10.5683/sp3/eolfht
title: Biochar and deactivated yeast as seed coatings for restoration: performance on alternative substrates

description: Seedling establishment is often a critical bottleneck to revegetation of mine tailings and similar substrates with a low capacity to retain water and plant nutrients. Biochar and deactivated yeast are potential sustainable, low-cost materials with high nutrient- and water-holding capacity that could be used in this context as seed coatings to aid in seedling establishment on challenging substrates. We conducted a greenhouse study to assess the effectiveness of biochar and deactivated yeast, applied alone in a factorial combination, as seed coatings, on the germination, establishment, and early growth of white clover (Trifolium repens) and purple prairie clover (Dalea purpurea). Coated seeds were applied to a mine tailing, a coarse granitic sand, and potting soil mix substates; seedling establishment and growth were monitored over 75 days. Results indicate strong interactive effects of seed coating type with effects of species and substrate. Biochar coatings enhanced germination of Trifolium, while yeast coatings did so for Dalea. In some cases, these effects persisted throughout the experiment. Biochar coatings resulted in a ~5-fold increase in Trifolium biomass at harvest for plants in the potting soil mix but had neutral effects on sand and tailings. Yeast seed coatings enhanced biomass at harvest on tailings for Dalea. Our results indicate that biochar- and yeast-based seed coatings can have lasting effects on plant growth well beyond germination, but also emphasize highly species-specific responses that highlight the need for further study of broader patterns and mechanisms.
DOI: 10.5683/sp3/ylteaf
title: Search for Pre-operative Weight-loss for patients with Gastrointestinal Cancer
title: Search history replication data for: A scoping review of preoperative weight-loss interventions on postoperative outcomes for patients with gastrointestinal cancer

description: The notes field contains the full MEDLINE (Ovid) search strategy for pre-operative weight-loss interventions and gastrointestinal cancer. The file in this dataset contains the full MEDLINE (Ovid), Embase (Ovid), CINAHL (EBSCO), and Google Scholar search strategies for pre-operative weight-loss interventions and gastrointestinal cancer. Search date: (2023-02-14), Updated: (2024-04-19)
description: 1 (Surg* or Resection* or Operat* or Preoperat*).mp. 4385584
2 Esophagectomy/ or Colectomy/ or exp Proctectomy/ or exp Gastrectomy/ or intestine, large/su or exp Colon/su or Esophagus/su or Stomach/su or (Colectom* or Hemicolectom* or Proctocolectom* or gastrectom* or gastrojejunostom* or Esophagectom* or esophagogastrectom* or oesophagectom* or oesophagogastrectom*).mp. 128115
3 intestine, large/ or exp Colon/ or Esophagus/ or Stomach/ or (colon* or intestin* or bowel* or abdom* or gastrointestin* or gastr* or stomach or esophag* or oesophag*).mp. 2392359
4 exp Gastrointestinal Neoplasms/ 433169
5 exp Neoplasms/ or (oncolog* or cancer* or carcinoma* or tumor* or tumour* or neoplasm* or metasta* or malignan* or adenocarcino* or lymphoma).mp. 5224007
6 1 and 3 and 5 242388
7 2 and 5 67514
8 1 and 4 164644
9 6 or 7 or 8 287548
10 exp Weight Loss/ or Weight reduction programs/ or exp Obesity Management/ or diet, reducing/ or (weight adj2 (manag* or control* or maintain* or loss* or reduc*)).mp. 188541
11 9 and 10 6063