cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3558594
title: Supplement 1. Parameter estimates (and standard errors) for all models in the ΔAIC ≤ 7 subset of 262 models describing vegetation-based predictors of habitat preference.

description: File List output.txt (MD5: 93054ba964d0f01ec6f684f9be0514b7) Description The output.txt file is a comma-delimited file. It contains the parameter estimates (plus standard errors) for 262 models describing the vegetation-based predictors of nesting habitat preference in song sparrows on Mandarte Island, BC. For further information on vegetation variables (and species names), see <i>Methods</i>. Column definitions Model Rank (rank within 262 model subset) Intercept Edge (linear distance [m] of shrub/grass interface) Area Shrub (total area of shrub cover) Currant (m²) Elder (m²) Oceanspray (m²) Trailing Blackberry (m²) Himalayan Blackberry (m²) Rose (m²) Willow (m²) Serviceberry (m²) Soil Depth (m²) df (degrees of freedom) deltaAIC (difference in AIC from ‘best’ model [i.e., model rank = 1]) AICwt (AIC weight) cumltvWt (cumulative AIC weight)
DOI: 10.6084/m9.figshare.3558594.v1
title: Supplement 1. Parameter estimates (and standard errors) for all models in the ΔAIC ≤ 7 subset of 262 models describing vegetation-based predictors of habitat preference.

description: File List output.txt (MD5: 93054ba964d0f01ec6f684f9be0514b7) Description The output.txt file is a comma-delimited file. It contains the parameter estimates (plus standard errors) for 262 models describing the vegetation-based predictors of nesting habitat preference in song sparrows on Mandarte Island, BC. For further information on vegetation variables (and species names), see <i>Methods</i>. Column definitions Model Rank (rank within 262 model subset) Intercept Edge (linear distance [m] of shrub/grass interface) Area Shrub (total area of shrub cover) Currant (m²) Elder (m²) Oceanspray (m²) Trailing Blackberry (m²) Himalayan Blackberry (m²) Rose (m²) Willow (m²) Serviceberry (m²) Soil Depth (m²) df (degrees of freedom) deltaAIC (difference in AIC from ‘best’ model [i.e., model rank = 1]) AICwt (AIC weight) cumltvWt (cumulative AIC weight)
DOI: 10.6084/m9.figshare.3558591
title: Appendix A. ANOVA tables for all statistical analyses and figures presenting plot productivity, plot average midday canopy transpiration, functional group biomass, plot biomass, inorganic nitrogen availability response to rain events, and deep soil moisture response to rain events.

description: ANOVA tables for all statistical analyses and figures presenting plot productivity, plot average midday canopy transpiration, functional group biomass, plot biomass, inorganic nitrogen availability response to rain events, and deep soil moisture response to rain events.
DOI: 10.6084/m9.figshare.3558591.v1
title: Appendix A. ANOVA tables for all statistical analyses and figures presenting plot productivity, plot average midday canopy transpiration, functional group biomass, plot biomass, inorganic nitrogen availability response to rain events, and deep soil moisture response to rain events.

description: ANOVA tables for all statistical analyses and figures presenting plot productivity, plot average midday canopy transpiration, functional group biomass, plot biomass, inorganic nitrogen availability response to rain events, and deep soil moisture response to rain events.
DOI: 10.6084/m9.figshare.3558588
title: Appendix A. Image of study area (color version of Plate 1) and detailed results from the cluster analysis, PERMANOVA, CAP analysis, and ANOVAs.

description: Image of study area (color version of Plate 1) and detailed results from the cluster analysis, PERMANOVA, CAP analysis, and ANOVAs.
DOI: 10.6084/m9.figshare.3558588.v1
title: Appendix A. Image of study area (color version of Plate 1) and detailed results from the cluster analysis, PERMANOVA, CAP analysis, and ANOVAs.

description: Image of study area (color version of Plate 1) and detailed results from the cluster analysis, PERMANOVA, CAP analysis, and ANOVAs.
DOI: 10.6084/m9.figshare.3558585
title: Supplement 1. Data files for abundance-weighted leaf traits, soil nutrient data for defining community composition, and reciprocal transplant experiment data, along with data from the test of switch drivers for the greenhouse experiment and the field experiment.

description: File List Abundance_weighted_leaf_traits.csv (MD5: f50ceaec03154c095a8fb713ff08bf13) Soil_nutrients.csv (MD5: 5fac67a5472ede6c7fd1c104783088a2) Samples_for_defining_communities.csv (MD5: 39d61c28a43b9f3851884019fb6dc0d5) Reciprocal_transplant_experiment.csv (MD5: 21785f772bd940c4b834e62e62725cb4) Drivers_greenhouse_experiment.csv ( MD5: 35cd6194bfa27147b99395efeca8b23b) Drivers_field_experiment.csv (MD5: 48ab4c8fba5e19acfe1e1a71c060a42d) Description "Abundance_weighted_leaf_traits" – the leaf trait data. "Soil_nutrients" – the soil data. "Samples_for_defining_communities" –data used to define the two communities. "Reciprocal_transplant_experiment" – species frequency data from the reciprocal transplant experiment. "Drivers_greenhouse_experiment" – the biomass data for each community for the test of drivers: greenhouse experiment. "Drivers_field_experiment" – The data from the test of drivers: field experiment.
DOI: 10.6084/m9.figshare.3558582
title: Appendix A. Supplementary field survey methods.

description: Supplementary field survey methods.
DOI: 10.6084/m9.figshare.3558582.v1
title: Appendix A. Supplementary field survey methods.

description: Supplementary field survey methods.
DOI: 10.6084/m9.figshare.3558579
title: Appendix B. Summaries of specific-leaf-area-environment models.

description: Summaries of specific-leaf-area-environment models.
DOI: 10.6084/m9.figshare.3558579.v1
title: Appendix B. Summaries of specific-leaf-area-environment models.

description: Summaries of specific-leaf-area-environment models.
DOI: 10.6084/m9.figshare.3558576
title: Appendix C. Additional information for each of the modeled species.

description: Additional information for each of the modeled species.
DOI: 10.6084/m9.figshare.3558576.v1
title: Appendix C. Additional information for each of the modeled species.

description: Additional information for each of the modeled species.
DOI: 10.6084/m9.figshare.3558573
title: Test-retest Reliability Data.zip

description: The patient and healthy control data sets have been included. They are organized according to task, and within each task folder is the patient and healthy control folders. The subject folders are available there including their 3dvolume scan and two runs repeated for each task. Timing files have been included (txt) as well as the master script used to calculate reliability metrics.
DOI: 10.6084/m9.figshare.3558570
title: Appendix D. Minimum, mean, and maximum values of explanatory variables included in candidate models for each of the modeled species.

description: Minimum, mean, and maximum values of explanatory variables included in candidate models for each of the modeled species.
DOI: 10.6084/m9.figshare.3558567
title: Appendix E. A figure showing relationships between the magnitude of specific-leaf-area change from 2010 to 2011 and the change in relative and absolute abundance for each species over the same period, and photos showing the same location in 2010 (drier growing season) and 2011 (wetter growing season).

description: A figure showing relationships between the magnitude of specific-leaf-area change from 2010 to 2011 and the change in relative and absolute abundance for each species over the same period, and photos showing the same location in 2010 (drier growing season) and 2011 (wetter growing season).
DOI: 10.6084/m9.figshare.3558567.v1
title: Appendix E. A figure showing relationships between the magnitude of specific-leaf-area change from 2010 to 2011 and the change in relative and absolute abundance for each species over the same period, and photos showing the same location in 2010 (drier growing season) and 2011 (wetter growing season).

description: A figure showing relationships between the magnitude of specific-leaf-area change from 2010 to 2011 and the change in relative and absolute abundance for each species over the same period, and photos showing the same location in 2010 (drier growing season) and 2011 (wetter growing season).
DOI: 10.6084/m9.figshare.3558564
title: Appendix A. Extended methods for soil microbial extraction and analyses, along with understory water dynamics.

description: Extended methods for soil microbial extraction and analyses, along with understory water dynamics.
DOI: 10.6084/m9.figshare.3558564.v1
title: Appendix A. Extended methods for soil microbial extraction and analyses, along with understory water dynamics.

description: Extended methods for soil microbial extraction and analyses, along with understory water dynamics.
DOI: 10.6084/m9.figshare.3558561
title: Appendix B. A figure depicting the correlation between foliar arthropod abundance and litter microarthropod abundance.

description: A figure depicting the correlation between foliar arthropod abundance and litter microarthropod abundance.
DOI: 10.6084/m9.figshare.3558561.v1
title: Appendix B. A figure depicting the correlation between foliar arthropod abundance and litter microarthropod abundance.

description: A figure depicting the correlation between foliar arthropod abundance and litter microarthropod abundance.
DOI: 10.6084/m9.figshare.3558558
title: Appendix A. Sinharaja forest dynamic plot, topographic habitat variables, variation partitioning, eigenfunctions of dbMEM, percentage of variation of species composition explained by blocks of eigenfunctions, variation partitioning for species composition, and effects of sample size.

description: Sinharaja forest dynamic plot, topographic habitat variables, variation partitioning, eigenfunctions of dbMEM, percentage of variation of species composition explained by blocks of eigenfunctions, variation partitioning for species composition, and effects of sample size.
DOI: 10.6084/m9.figshare.3558558.v1
title: Appendix A. Sinharaja forest dynamic plot, topographic habitat variables, variation partitioning, eigenfunctions of dbMEM, percentage of variation of species composition explained by blocks of eigenfunctions, variation partitioning for species composition, and effects of sample size.

description: Sinharaja forest dynamic plot, topographic habitat variables, variation partitioning, eigenfunctions of dbMEM, percentage of variation of species composition explained by blocks of eigenfunctions, variation partitioning for species composition, and effects of sample size.
DOI: 10.6084/m9.figshare.3558555
title: Appendix B. Methodology of habitat variables, Hellinger transformation, reconstruction of habitat variables, distance-based Moran’s eigenvector maps (dbMEM), forward selection of habitat and dbMEM variables, and variation partitioning.

description: Methodology of habitat variables, Hellinger transformation, reconstruction of habitat variables, distance-based Moran’s eigenvector maps (dbMEM), forward selection of habitat and dbMEM variables, and variation partitioning.
DOI: 10.6084/m9.figshare.3558555.v1
title: Appendix B. Methodology of habitat variables, Hellinger transformation, reconstruction of habitat variables, distance-based Moran’s eigenvector maps (dbMEM), forward selection of habitat and dbMEM variables, and variation partitioning.

description: Methodology of habitat variables, Hellinger transformation, reconstruction of habitat variables, distance-based Moran’s eigenvector maps (dbMEM), forward selection of habitat and dbMEM variables, and variation partitioning.
DOI: 10.6084/m9.figshare.3558552
title: Appendix A. Summary of environmental data: light, soil moisture, and soil nitrogen.

description: Summary of environmental data: light, soil moisture, and soil nitrogen.
DOI: 10.6084/m9.figshare.3558552.v1
title: Appendix A. Summary of environmental data: light, soil moisture, and soil nitrogen.

description: Summary of environmental data: light, soil moisture, and soil nitrogen.
DOI: 10.6084/m9.figshare.3558549
title: Appendix B. Exploratory data analysis (correlations) used for model configuration.

description: Exploratory data analysis (correlations) used for model configuration.
DOI: 10.6084/m9.figshare.3558549.v1
title: Appendix B. Exploratory data analysis (correlations) used for model configuration.

description: Exploratory data analysis (correlations) used for model configuration.
DOI: 10.6084/m9.figshare.3558546
title: Appendix C. Analytical methods: detailed description of the model and parameter estimation.

description: Analytical methods: detailed description of the model and parameter estimation.
DOI: 10.6084/m9.figshare.3558546.v1
title: Appendix C. Analytical methods: detailed description of the model and parameter estimation.

description: Analytical methods: detailed description of the model and parameter estimation.
DOI: 10.6084/m9.figshare.3558543
title: Appendix D. Additional results: models' fits and plot and year random effects.

description: Additional results: models' fits and plot and year random effects.
DOI: 10.6084/m9.figshare.3558543.v1
title: Appendix D. Additional results: models' fits and plot and year random effects.

description: Additional results: models' fits and plot and year random effects.
DOI: 10.6084/m9.figshare.3558540
title: Supplement 1. OpenBUGS code for the mychorrhizal fungi colonization, growth, and survival models.

description: File List OpenBUGScode.txt (MD5: 63f2be158f729448564b82c3348587d7)Description The file OpenBUGScode.txt contains the code for the three submodels described in the article: mychorrhizal fungi colonization and abundance, seedlings growth and seedling survival. The survival submodel uses predictions from the mycorrhizal fungi and growth submodels. Detailed description of the model, parameters and parameter prior distributions are provided in Appendix C.
DOI: 10.6084/m9.figshare.3558540.v1
title: Supplement 1. OpenBUGS code for the mychorrhizal fungi colonization, growth, and survival models.

description: File List OpenBUGScode.txt (MD5: 63f2be158f729448564b82c3348587d7)Description The file OpenBUGScode.txt contains the code for the three submodels described in the article: mychorrhizal fungi colonization and abundance, seedlings growth and seedling survival. The survival submodel uses predictions from the mycorrhizal fungi and growth submodels. Detailed description of the model, parameters and parameter prior distributions are provided in Appendix C.
DOI: 10.6084/m9.figshare.3558537
title: Appendix A. Descriptions of hierarchical Bayesian models for tree architecture, relative growth rate, and mortality rates.

description: Descriptions of hierarchical Bayesian models for tree architecture, relative growth rate, and mortality rates.
DOI: 10.6084/m9.figshare.3558534
title: Appendix B. Size-dependent changes in relative growth rate (RGR) and mortality with a different focal parameter.

description: Size-dependent changes in relative growth rate (RGR) and mortality with a different focal parameter.
DOI: 10.6084/m9.figshare.3558534.v1
title: Appendix B. Size-dependent changes in relative growth rate (RGR) and mortality with a different focal parameter.

description: Size-dependent changes in relative growth rate (RGR) and mortality with a different focal parameter.
DOI: 10.6084/m9.figshare.3558531
title: Appendix C. Medians and 95% intervals of correlation coefficients between pairs of architectural traits and parameters of tree architecture and demographic rates.

description: Medians and 95% intervals of correlation coefficients between pairs of architectural traits and parameters of tree architecture and demographic rates.
DOI: 10.6084/m9.figshare.3558531.v1
title: Appendix C. Medians and 95% intervals of correlation coefficients between pairs of architectural traits and parameters of tree architecture and demographic rates.

description: Medians and 95% intervals of correlation coefficients between pairs of architectural traits and parameters of tree architecture and demographic rates.
DOI: 10.6084/m9.figshare.3558528
title: Appendix D. Size-dependent changes in correlation coefficients between tree architectural variables and RGR or mortality.

description: Size-dependent changes in correlation coefficients between tree architectural variables and RGR or mortality.
DOI: 10.6084/m9.figshare.3558528.v1
title: Appendix D. Size-dependent changes in correlation coefficients between tree architectural variables and RGR or mortality.

description: Size-dependent changes in correlation coefficients between tree architectural variables and RGR or mortality.
DOI: 10.6084/m9.figshare.3558525
title: Appendix E. Size-dependent changes in correlation coefficients between demographic rates and architectural traits for different adult-stature guilds.

description: Size-dependent changes in correlation coefficients between demographic rates and architectural traits for different adult-stature guilds.
DOI: 10.6084/m9.figshare.3558525.v1
title: Appendix E. Size-dependent changes in correlation coefficients between demographic rates and architectural traits for different adult-stature guilds.

description: Size-dependent changes in correlation coefficients between demographic rates and architectural traits for different adult-stature guilds.
DOI: 10.6084/m9.figshare.3558522
title: Appendix F. Size-dependent changes in the range of architectural traits within compared species.

description: Size-dependent changes in the range of architectural traits within compared species.
DOI: 10.6084/m9.figshare.3558522.v1
title: Appendix F. Size-dependent changes in the range of architectural traits within compared species.

description: Size-dependent changes in the range of architectural traits within compared species.
DOI: 10.6084/m9.figshare.3558519
title: Supplement 1. Species traits and estimated demographic parameters.

description: File List supplement.csv (MD5: d71623ade5df524f75bf18da8188546a)Description For each species, population size (<i>N</i>) in the 50-ha plot, upper-diameter (<i>D</i>*), average wood density (WD) and source of wood density (1: S. J Wright, <i>unpublished data</i>, 2: Global Wood Density Database) are shown in column 4–7. Probability distributions of five demographic parameters <i>r</i><sub>1</sub>, <i>r</i><sub>2</sub>, <i>m</i><sub>1</sub>, <i>m</i><sub>2</sub> and <i>m</i><sub>3</sub> were summarized as medians and 95% intervals (column 8–12).
DOI: 10.6084/m9.figshare.3558519.v1
title: Supplement 1. Species traits and estimated demographic parameters.

description: File List supplement.csv (MD5: d71623ade5df524f75bf18da8188546a)Description For each species, population size (<i>N</i>) in the 50-ha plot, upper-diameter (<i>D</i>*), average wood density (WD) and source of wood density (1: S. J Wright, <i>unpublished data</i>, 2: Global Wood Density Database) are shown in column 4–7. Probability distributions of five demographic parameters <i>r</i><sub>1</sub>, <i>r</i><sub>2</sub>, <i>m</i><sub>1</sub>, <i>m</i><sub>2</sub> and <i>m</i><sub>3</sub> were summarized as medians and 95% intervals (column 8–12).
DOI: 10.6084/m9.figshare.3558516
title: Appendix A. Detailed fire history of each site.

description: Detailed fire history of each site.
DOI: 10.6084/m9.figshare.3558516.v1
title: Appendix A. Detailed fire history of each site.

description: Detailed fire history of each site.
DOI: 10.6084/m9.figshare.3558513
title: Appendix B. List of species used for wood stoichiometry, with C and N content.

description: List of species used for wood stoichiometry, with C and N content.
DOI: 10.6084/m9.figshare.3558513.v1
title: Appendix B. List of species used for wood stoichiometry, with C and N content.

description: List of species used for wood stoichiometry, with C and N content.
DOI: 10.6084/m9.figshare.3558510
title: Appendix C. Summary tables and statistical analyses of ecosystem C and N stocks.

description: Summary tables and statistical analyses of ecosystem C and N stocks.
DOI: 10.6084/m9.figshare.3558510.v1
title: Appendix C. Summary tables and statistical analyses of ecosystem C and N stocks.

description: Summary tables and statistical analyses of ecosystem C and N stocks.
DOI: 10.6084/m9.figshare.3558507
title: Appendix D. Tissue stoichiometry and δ15N.

description: Tissue stoichiometry and δ15N.
DOI: 10.6084/m9.figshare.3558507.v1
title: Appendix D. Tissue stoichiometry and δ15N.

description: Tissue stoichiometry and δ15N.
DOI: 10.6084/m9.figshare.3558504
title: Appendix A. Markov chain Monte Carlo methods.

description: Markov chain Monte Carlo methods.
DOI: 10.6084/m9.figshare.3558504.v1
title: Appendix A. Markov chain Monte Carlo methods.

description: Markov chain Monte Carlo methods.
DOI: 10.6084/m9.figshare.3558501
title: Appendix B. Abundance trajectories for simulated data.

description: Abundance trajectories for simulated data.
DOI: 10.6084/m9.figshare.3558501.v1
title: Appendix B. Abundance trajectories for simulated data.

description: Abundance trajectories for simulated data.
DOI: 10.6084/m9.figshare.3558498
title: Appendix C. Credible interval estimates.

description: Credible interval estimates.
DOI: 10.6084/m9.figshare.3558498.v1
title: Appendix C. Credible interval estimates.

description: Credible interval estimates.
DOI: 10.6084/m9.figshare.3558495
title: Appendix D. Priors and posteriors for variance parameters.

description: Priors and posteriors for variance parameters.
DOI: 10.6084/m9.figshare.3558495.v1
title: Appendix D. Priors and posteriors for variance parameters.

description: Priors and posteriors for variance parameters.
DOI: 10.6084/m9.figshare.3558492
title: Appendix A. A figure showing the sensitivity of the modularity approach to changing the minimum modularity threshold.

description: A figure showing the sensitivity of the modularity approach to changing the minimum modularity threshold.
DOI: 10.6084/m9.figshare.3558492.v1
title: Appendix A. A figure showing the sensitivity of the modularity approach to changing the minimum modularity threshold.

description: A figure showing the sensitivity of the modularity approach to changing the minimum modularity threshold.
DOI: 10.6084/m9.figshare.3558489
title: Appendix B. A figure showing the sensitivity of the modularity approach to changing the maximum linkage distance.

description: A figure showing the sensitivity of the modularity approach to changing the maximum linkage distance.
DOI: 10.6084/m9.figshare.3558489.v1
title: Appendix B. A figure showing the sensitivity of the modularity approach to changing the maximum linkage distance.

description: A figure showing the sensitivity of the modularity approach to changing the maximum linkage distance.
DOI: 10.6084/m9.figshare.3558486
title: Appendix C. Three figures showing the actual logistic relationships between colonization/extinction and area/connectivity for the contiguity (C1), separation-distance (C2), and modularity (C3) approaches.

description: Three figures showing the actual logistic relationships between colonization/extinction and area/connectivity for the contiguity (C1), separation-distance (C2), and modularity (C3) approaches.
DOI: 10.6084/m9.figshare.3558486.v1
title: Appendix C. Three figures showing the actual logistic relationships between colonization/extinction and area/connectivity for the contiguity (C1), separation-distance (C2), and modularity (C3) approaches.

description: Three figures showing the actual logistic relationships between colonization/extinction and area/connectivity for the contiguity (C1), separation-distance (C2), and modularity (C3) approaches.
DOI: 10.6084/m9.figshare.3558480
title: Appendix A. Photographs from 1979 to 2009 of a plot cleared by chipping in 1978.

description: Photographs from 1979 to 2009 of a plot cleared by chipping in 1978.
DOI: 10.6084/m9.figshare.3558480.v1
title: Appendix A. Photographs from 1979 to 2009 of a plot cleared by chipping in 1978.

description: Photographs from 1979 to 2009 of a plot cleared by chipping in 1978.
DOI: 10.6084/m9.figshare.3558477
title: Appendix B. Photographs from 1978 to 2009 of a control plot that was not chipped.

description: Photographs from 1978 to 2009 of a control plot that was not chipped.