cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14473581
title: Mechanomics RT-DC Set 05 - iPSCs

description: Entry is a part of <b>Mechanomics</b> collection (10.6084/m9.figshare.c.5399826) that contains materials supporting findings presented in the following manuscript:<i>Urbanska, M., Ge, Y.</i> et al.,<br><b><i>De novo identification of universal cell mechanics gene signatures</i></b>BiorXiv: https://doi.org/10.1101/2021.04.26.441418<i>;</i><i> </i><i>first published:</i><i> </i>27th April 2021<i>, last updated:</i><i> </i>4th Nov 2024<br>eLife: https://doi.org/10.7554/eLife.87930<i>; first published:</i><i> </i>23rd March 2023<i>, last updated:</i><i> </i>27th Dec 2024<br>This dataset contains mechanical measurements of murine induced pluripotent stem cells (iPSCs) of two different classes:<br>• transgene-dependent, fuzzy-colony forming - F-class<br>• transgene-independant, compact-colony forming - C-class.<br>These two cell types were first characterised by Tonge et al (<i>Nature, 2014</i>). The cell lines used in this study were derived in a previously published study by Urbanska et al (<i>Development, 2017</i>) via reprogramming of neural progenitor cells using a dox-induced expression of the OSKM reprogramming factors.Measurements were performed using real-time deformability cytometry (RT-DC).<b>_rtdc.zip</b> - contains data acquired during the measurments in '*.rtdc' format<br><b>_tsv.zip</b> - contains extended data in a '*.tsv' format<b>_glmm.zip</b> - contains result summaries of statistical analysis comparing Young's moduli of the different cell types using generalised linear mixed effects modelsTonge, P. D. <i>et al.</i> Divergent reprogramming routes lead to alternative stem-cell states. <i>Nature </i><b>516</b>, 192–197 (2014) https://doi.org/10.1038/nature14047Urbanska, M. <i>et al.</i> Single-cell mechanical phenotype is an intrinsic marker of reprogramming and differentiation along the mouse neural lineage. <i>Development </i><b>144</b>, 4313–4321 (2017) https://doi.org/10.1242/dev.155218<br>
DOI: 10.6084/m9.figshare.14473581.v2
title: Mechanomics RT-DC Set 05 - iPSCs

description: Entry is a part of <b>Mechanomics</b> collection (10.6084/m9.figshare.c.5399826) that contains materials supporting findings presented in the following manuscript:<i>Urbanska, M., Ge, Y.</i> et al.,<br><b><i>De novo identification of universal cell mechanics gene signatures</i></b>BiorXiv: https://doi.org/10.1101/2021.04.26.441418<i>;</i><i> </i><i>first published:</i><i> </i>27th April 2021<i>, last updated:</i><i> </i>4th Nov 2024<br>eLife: https://doi.org/10.7554/eLife.87930<i>; first published:</i><i> </i>23rd March 2023<i>, last updated:</i><i> </i>27th Dec 2024<br>This dataset contains mechanical measurements of murine induced pluripotent stem cells (iPSCs) of two different classes:<br>• transgene-dependent, fuzzy-colony forming - F-class<br>• transgene-independant, compact-colony forming - C-class.<br>These two cell types were first characterised by Tonge et al (<i>Nature, 2014</i>). The cell lines used in this study were derived in a previously published study by Urbanska et al (<i>Development, 2017</i>) via reprogramming of neural progenitor cells using a dox-induced expression of the OSKM reprogramming factors.Measurements were performed using real-time deformability cytometry (RT-DC).<b>_rtdc.zip</b> - contains data acquired during the measurments in '*.rtdc' format<br><b>_tsv.zip</b> - contains extended data in a '*.tsv' format<b>_glmm.zip</b> - contains result summaries of statistical analysis comparing Young's moduli of the different cell types using generalised linear mixed effects modelsTonge, P. D. <i>et al.</i> Divergent reprogramming routes lead to alternative stem-cell states. <i>Nature </i><b>516</b>, 192–197 (2014) https://doi.org/10.1038/nature14047Urbanska, M. <i>et al.</i> Single-cell mechanical phenotype is an intrinsic marker of reprogramming and differentiation along the mouse neural lineage. <i>Development </i><b>144</b>, 4313–4321 (2017) https://doi.org/10.1242/dev.155218<br>
DOI: 10.15468/w8gru5
title: Vascular Plants, Field notes, Oslo (O) UiO

description: Vascular Plants, Field notes from Norway
DOI: 10.6084/m9.figshare.14473554
title: Mechanomics RT-DC Set 06 - Developing Neurons

description: Entry is a part of <b>Mechanomics</b> collection (10.6084/m9.figshare.c.5399826) that contains materials supporting findings presented in the following manuscript:<i>Urbanska, M., Ge, Y.</i> et al.,<br><b><i>De novo identification of universal cell mechanics gene signatures</i></b>BiorXiv: https://doi.org/10.1101/2021.04.26.441418<i>;</i><i> </i><i>first published:</i><i> </i>27th April 2021<i>, last updated:</i><i> </i>4th Nov 2024<br>eLife: https://doi.org/10.7554/eLife.87930<i>; first published:</i><i> </i>23rd March 2023<i>, last updated:</i><i> </i>27th Dec 2024<br>This dataset contains mechanical measurement of three populations of developing neurons isolated from the lateral cortices of double reporter E14.5 mouse embryos (<i>Btg2RFP/Tubb3GFP</i>):<br>• proliferating progenitors (PPs) - RFP–/GFP–• differentatiating progenitors (DPs) - RFP+/GFP–<br>• newborn neurons (NNs) - GFP+.<br>Cells were isolated according to previously established procedures (Aprea <i>et al.</i>, 2013, <i>EMBO J</i>).Measurements were performed using real-time deformability cytometry (RT-DC).<b>_rtdc.zip</b> - contains data acquired during the measurments in '*.rtdc' format<br><b>_tsv.zip</b> - contains extended data in a '*.tsv' format<b>_glmm.zip</b> - contains result summaries of statistical analysis comparing Young's moduli of the different cell types using generalised linear mixed effects modelsAprea, J. <i>et al.</i> Transcriptome sequencing during mouse brain development identifies long non-coding RNAs functionally involved in neurogenic commitment. <i>EMBO J</i>. <b>32</b>, 3145–3160 (2013) https://doi.org/10.1038/emboj.2013.245
DOI: 10.6084/m9.figshare.14473554.v1
title: Mechanomics RT-DC Set 06 - Developing Neurons

description: Entry is a part of <b>Mechanomics</b> collection (10.6084/m9.figshare.c.5399826) that contains data supporting findings presented in the following manuscript:<i>Urbanska, M., Ge, Y.</i> et al., 2021 bioRxiv<b><i>De novo identification of universal cell mechanics regulators</i></b>https://doi.org/10.1101/2021.04.26.441418<br>This dataset contains mechanical measurement of three populations of developing neurons isolated from the lateral cortices of double reporter E14.5 mouse embryos (<i>Btg2RFP/Tubb3GFP</i>):<br>• proliferating progenitors (PPs) - RFP–/GFP–• differentatiating progenitors (DPs) - RFP+/GFP–• newborn neurons (NNs) - GFP+.Cells were isolated according to previously established procedures (Aprea <i>et al.</i>, 2013, <i>EMBO J</i>).<br>Measurements were performed using real-time deformability cytometry (RT-DC).<br><b>_rtdc.zip</b> - contains data acquired during the measurments in '*.rtdc' format<b>_tsv.zip</b> - contains extended data in a '*.tsv' format<b>_glmm.zip</b> - contains result summaries of statistical analysis comparing Young's moduli of the different cell types using generalised linear mixed effects models<br>Aprea, J. <i>et al.</i> Transcriptome sequencing during mouse brain development identifies long non-coding RNAs functionally involved in neurogenic commitment. <i>EMBO J</i>. <b>32</b>, 3145–3160 (2013) https://doi.org/10.1038/emboj.2013.245
DOI: 10.6084/m9.figshare.28306439
title: Data for Informativeness Score Using Mixed Data

description: This is data which supports the findings presented in a manuscript entitled "An Informativeness Score for Optimal Mixed Datasets Using Gaussian Process Regression"
DOI: 10.18430/m38y17
title: X-ray diffraction data for the crystal structure of a mutant Staphylococcus equorum manganese superoxide dismutase T89C and N187C (8Y17)
DOI: 10.15468/dl.gzv84t
title: Occurrence Download

description: A dataset containing 340404 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pistacia aethiopica Kokwaro, Pistacia atlantica Desf., Pistacia chinensis Bunge, Pistacia cucphuongensis Than, Pistacia eurycarpa Yalt., Pistacia falcata Becc. ex Martelli, Pistacia khinjuk Stocks, Pistacia lentiscus L., Pistacia malayana M.R.Hend., Pistacia mexicana Kunth, Pistacia terebinthus L., Pistacia vera L., Pistacia weinmannifolia J.Poiss. ex Franch.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 340404 records from 662 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004588-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjmxej
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hippocampus guttulatus Cuvier, 1829",
 "Year 1000-1899"
 ]
}

 The dataset includes 36 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013794-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpagbf
title: Occurrence Download

description: A dataset containing 170782 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ilex aquifolium L."
 ]
}

 The dataset includes 170782 records from 339 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006129-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x7jcwu
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium siluriense (F.Hanb.) P.D.Sell"
 ]
}

 The dataset includes 64 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027301-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yzktr7
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aconitum chrysotrichum W.T.Wang"
 ]
}

 The dataset includes 36 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013791-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83znyw
title: Occurrence Download

description: A dataset containing 669 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Juniperus oxycedrus subsp. macrocarpa (Sibth. & Sm.) Ball"
 ]
}

 The dataset includes 669 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006129-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eg8h7z
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aichryson palmense Webb ex Bolle"
 ]
}

 The dataset includes 50 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023283-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vak45x
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Convolvulus sinuatodentatus Collett & Hemsl."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013800-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8uhmrs
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 {
 "or" : [
 "TaxonKey is Lepomis macrochirus Rafinesque, 1819",
 "TaxonKey is Micropterus salmoides (Lacepède, 1802)",
 "TaxonKey is Pomoxis nigromaculatus (Lesueur, 1829)",
 "TaxonKey is Parachromis managuensis (Günther, 1867)",
 "TaxonKey is Oreochromis auraeus (Steindachner, 1864)",
 "TaxonKey is Oreochromis mossambicus (Peters, 1852)",
 "TaxonKey is Carassius auratus (Linnaeus, 1758)",
 "TaxonKey is Ctenopharyngodon idella (Valenciennes, 1844)",
 "TaxonKey is Cyprinus carpio Linnaeus, 1758",
 "TaxonKey is Ictalurus punctatus (Rafinesque, 1818)",
 "TaxonKey is Pterygoplichthys pardalis (Castelnau, 1855)",
 "TaxonKey is Poecilia reticulata Peters, 1859",
 "TaxonKey is Oncorhynchus myskis (Walbaum, 1792)",
 "TaxonKey is Oreochromis niloticus (Linnaeus, 1758)",
 "TaxonKey is Lepomis gibbosus (Linnaeus, 1758)",
 "TaxonKey is Pterygoplichthys disjunctivus (Weber, 1991)",
 "TaxonKey is Plecostomus punctatus (Valenciennes, 1840)",
 "TaxonKey is Cichla ocellaris Bloch & Schneider, 1801"
 ]
 }
 ]
}

 The dataset includes 51 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006129-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jtrnws
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Convolvulus stapfii Rech.fil."
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013824-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swhanr
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malva unguiculata (Desf.) Alef.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 22 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023322-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q33xnh
title: Occurrence Download

description: A dataset containing 3338 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "TaxonKey is Sambucus gaudichaudiana DC."
 ]
}

 The dataset includes 3338 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006129-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ab6q5
title: Occurrence Download

description: A dataset containing 1162431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((1.8796086666666671 32.097476, 35.924964333333335 32.097476, 35.924964333333335 49.184106666666665, 1.8796086666666671 49.184106666666665, 1.8796086666666671 32.097476))",
 "EventDate is 2019-05-01,2019-05-31"
 ]
}

 The dataset includes 1162431 records from 906 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023314-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.whmrsz
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Humularia pseudaeschynomene Verdc."
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027304-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcs1xr
title: Occurrence Download

description: A dataset containing 12573 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Smilisca baudinii (Duméril & Bibron, 1841)"
 ]
}

 The dataset includes 12573 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006130-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hdfwca
title: Occurrence Download

description: A dataset containing 879 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Cursorius somalensis Shelley, 1885"
 ]
}

 The dataset includes 879 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050163-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hfsfzj
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crepis litardieri Emb."
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013828-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gnecdo
title: Occurrence Download

description: A dataset containing 528 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "TaxonKey is Akania bidwillii (Hend. ex Hogg) Mabb."
 ]
}

 The dataset includes 528 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006130-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q53cny
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aconitum crassiflorum Hand.-Mazz."
 ]
}

 The dataset includes 110 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013809-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7xe5pe
title: Occurrence Download

description: A dataset containing 1365545 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sylvia borin (Boddaert, 1783)"
 ]
}

 The dataset includes 1365545 records from 2158 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013828-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/0sq-k88-823
title: Potentilla indica (Andrews) Th. Wolf

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/4kj-e2g-cbe
title: Pinguicula alpina L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rgl-n39-a9c
title: Amaranthus retroflexus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.5517/ccp0fz2
title: CCDC 626044: Experimental Crystal Structure Determination

description: Related Article: S.Kanegawa, S.Karasawa, M.Maeyama, M.Nakano, N.Koga|2008|J.Am.Chem.Soc.|130|3079|doi:10.1021/ja0767579
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccp0g04
title: CCDC 626045: Experimental Crystal Structure Determination

description: Related Article: S.Kanegawa, S.Karasawa, M.Maeyama, M.Nakano, N.Koga|2008|J.Am.Chem.Soc.|130|3079|doi:10.1021/ja0767579
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/5g5-mcg-9ls
title: Amaranthus retroflexus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9r4-kf6-5yc
title: Potentilla indica (Andrews) Th. Wolf

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ag2-ffw-l6p
title: Dryas octopetala L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.5517/ccpwlch
title: CCDC 652127: Experimental Crystal Structure Determination

description: Related Article: S.Kanegawa, S.Karasawa, M.Maeyama, M.Nakano, N.Koga|2008|J.Am.Chem.Soc.|130|3079|doi:10.1021/ja0767579
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccpwldj
title: CCDC 652128: Experimental Crystal Structure Determination

description: Related Article: S.Kanegawa, S.Karasawa, M.Maeyama, M.Nakano, N.Koga|2008|J.Am.Chem.Soc.|130|3079|doi:10.1021/ja0767579
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/cyg-jmx-0na
title: Trifolium subterraneum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/scv-mab-f9x
title: Filipendula ulmaria (L.) Maxim.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/vq0-96s-7ns
title: Pinguicula alpina L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.5517/ccr68ry
title: CCDC 691230: Experimental Crystal Structure Determination

description: Related Article: O.R.Allen, S.J.Dalgarno, L.D.Field, P.Jensen, A.J.Turnbull, A.C.Willis|2008|Organometallics|27|2092|doi:10.1021/om800091a
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.