cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24638878.v1
title: Mitochondrial genome-based synthesis and timeline of Eurasian otter (<i>Lutra lutra</i>) phylogeography

description: Eurasian otters (<i>Lutra lutra</i>) have a broad distribution across Eurasia, but biogeographic data outside of western Europe is limited to disconnected pockets. Based on current subspecies designations, Asia appears to harbour a large proportion of the species’ diversity, with 10 of 12 Eurasian otter subspecies found in Asia. Here we provide a range-wide synthesis of mitochondrial data, inferring a timeline and pattern of phylogeographic signals. Whole mitochondrial genomes of 27 Eurasian otters across 4 subspecies are presented from newly generated data (<i>n</i> = 6; 4 from Korea, 1 from Hong Kong and 2 from UK), assembled from the Sequence Read Archive (<i>n</i> = 4), and sourced from GenBank (<i>n</i> = 17). We then combined whole mitochondrial genome results with cytochrome <i>b</i> data to increase the sample size and contextualise our results with prior studies. We identified five distinct lineages that were discordant with current subspecies classification. Phylogenetic dating revealed that the earliest diverging lineage was the Japanese lineage, with remaining lineages diverging ≥0.08 million years ago. Mitochondrial diversity calculated by sample locations seemed mainly driven by the presence of multiple lineages. When grouping samples by lineage, genetic diversity was highest in Lineage 1 (primarily found in China and Laos), followed by Lineage 2 (primarily found in Korea), and lowest diversity identified in Lineage 3 (primarily found in Europe). Our findings highlight previously undetected lineage diversity within Eurasian otters, but also the need for further taxonomic and genomic evaluation of the species in Asia. The identified unique, distinct lineages of Eurasian otters also warrant urgent conservation attention.
DOI: 10.17632/2p9n54svvg
title: Original data for "Sources and enrichment mechanisms of lithium, rubidium, and cesium in magmatic geothermal waters"

description: This dataset includes original data of the figures in both main text and the Supplementary Material., the dataset serve as a part of the manuscript from Liu et al. "Sources and enrichment mechanisms of lithium, rubidium, and cesium in magmatic geothermal waters".
DOI: 10.6084/m9.figshare.14211263.v1
title: mBio_Wang_etal_2020_supplement_TableS9

description: <b>Supplemental Table S9. <i>C. albicans </i>genes with significantly elevated expression plasticity. </b>Each gene is listed with the coefficient of variation (CV) for expression for the gene across all isolates.
DOI: 10.6084/m9.figshare.15228690.v2
title: CO2 sequestration fractions

description: This dataset provides output from the CO2 sequestration calculations presented in the following paper: Siegel, D. A., DeVries, T., Doney, S., & Bell, T. (2021). Assessing the sequestration time scales of some ocean-based carbon dioxide reduction strategies. <i>Environmental Research Letters</i>.<br>This dataset provides the fraction of injected CO2 retained in the ocean for 0-1000 years after injection, which is referred to as f(t) in the above referenced paper. This fraction is shown in Figure 2 and Figure 4 of the above referenced paper, which can be reproduced using this dataset. This dataset only covers the years 0-1000 years, while the results shown in the above referenced paper are based on simulations running up to 5000 years after injection. For the longer simulations, or other output from the model, please contact the author.<br><br>A Matlab script with some example calculations is also provided. This script loads in the dataset and plots the fraction sequestered after 100 years for CO2 injection near the seafloor, and also plots f(t) from 0-1000 years for a user-specified location.<br>If using this dataset, please cite the original publication of Siegel et al. (2021).<br>
DOI: 10.6084/m9.figshare.27057976.v3
title: GTN XPress Pipeline Shapefile

description: National Pipeline Mapping System: https://pvnpms.phmsa.dot.gov/PublicViewer/TC Energy PDF Map: https://www.tcenergy.com/siteassets/pdfs/natural-gas/gtnxp/tce-gas-transmission-northwest-xpress-map.pdfCompressor data HIFLD (https://ft.maps.arcgis.com/home/item.html?id=d910e5aca7434d19899b1e5a05234051)USGS Topo Maps: https://ngmdb.usgs.gov/topoview/viewer/#4/40.00/-100.00Aerial Imagery:Historical - Google Earth Pro (using the time slider to check for ground scars over the years)Bing Satellite Imagery QGIS Plugin<br>
DOI: 10.6084/m9.figshare.28916810.v1
title: Supplementary Table18 Arabidopsis_Solanum pennellii・Solanum arcanum_DW-Score Top5 Percent_Gene_Correspondence_Table.csv

description: Currently, domesticated species available on the market have been developed through the breeding of wild relatives. We collected gene expression data of domesticated species of rice, tomato, and soybean, along with their presumed ancestral species, and conducted a meta-analysis to investigate differentially expressed genes during domestication. In wild relatives, the expression of gene groups involved in osmotic, drought, and wound stress tolerance was upregulated. In contrast, in domesticated species, upregulated ex-pression was observed in gene groups related to auxin and those involved in the efflux of heavy metals and harmful substances. By identifying these genes with differential ex-pression levels, we can gain insights into how domestication has influenced changes in crop traits. In particular, breeding strategies that make use of wild relatives with high genetic diversity are attracting attention as an important approach for addressing climate change and ensuring a sustainable food supply. The findings obtained in this study are expected to contribute to the realization of rapid breeding and the development of new varieties capable of growing in harsh natural environments. To address this issue, a new cultivation method called "De novo domestication" has been proposed, which combines the genetic diversity of currently unused wild relatives and wild relatives with genome editing technologies that enable rapid breeding.
DOI: 10.17632/4t5mtrv49r
title: Raw data-Identification of a Macrophage Marker Gene Signature to Evaluate Immune Infiltration and Therapeutic Response in Hepatocellular Carcinoma

description: Raw data and processing code of Article "Identification of a Macrophage Marker Gene Signature to Evaluate Immune Infiltration and Therapeutic Response in Hepatocellular Carcinoma" .
DOI: 10.6084/m9.figshare.1213798.v1
title: Alignment of BVDV-1 segment 2

description: Alignment of BVDV-1. The segments were defined using the beginning and ending breakpoints definied by RDP4 software and used as cutoff. The second segment of the alignment was present in the file.
DOI: 10.6084/m9.figshare.27959181.v1
title: DATA SET - Pilot Study of TLR-2 Expression from Exfoliated Colonocytes

description: Currently, diagnostics for intestinal tuberculosis, which depend on adaptive responses like delayed hypersensitivity or cytokine release by antigen-specific T cells, are inadequate for this challenge. Toll-like receptor 2 (TLR-2) is considered an important pattern recognition system for MTB. This study aimed to develop a noninvasive laboratory screening using TLR-2 biomarkers to diagnose ITB. We present data related to TLR-2 expression from exfoliated colonocytes in patients with healthy, ITB, and Non-ITB (pathology in colonoscopy and histopathology).
DOI: 10.17632/dtdkxvcsc9
title: mdapy: A flexible and efficient analysis software for molecular dynamics simulations

description: The mdapy is a library for pre- and postprocessing molecular dynamics simulation data. Benefitting from the just-in-time compile technology of TaiChi mdapy can be written in pure Python while possessing similar speed to those written in C++. mdapy is designed with highly paralleled and makes full advantages of modern computer resources on both multicore CPU and GPU architecture. The package implements a fast module to find the neighbors of particles in both free and periodic boundaries, based on which it offers a wide variety of methods to analyze atomic environments, such as standard centrosymmetry parameters, radial distribution function and newer methods, such as atomic entropy fingerprint. In addition, mdapy can be used to create the geometric structure of polycrystals with metallic or graphene grain boundaries by Voronoi diagram. mdapy can directly read the DUMP and DATA format defined in LAMMPS code, and, in practice, it accepts any other format by converting it into NumPy ndarray format. This design philosophy enables seamless integration with abundant scientific ecosystems in the Python community and easy cooperation with other analysis codes like OVITO or freud.
DOI: 10.6084/m9.figshare.12199835.v1
title: RPPA data

description: RPPA data
DOI: 10.6084/m9.figshare.19565935.v1
title: Data Collection

description: Research data instruments
DOI: 10.6084/m9.figshare.19978025.v2
title: Supplementary Material for: Childhood Maltreatment and Its Association with Cognitive Ability in Young People Suspected to Be at Clinical High Risk of Psychosis

description: <b><i>Introduction:</i></b> Childhood maltreatment is associated with both reduced cognitive functioning and the development of psychotic symptoms. However, the specific relationship between childhood maltreatment, cognitive abilities and (pre)psychotic symptoms remains unclear. Therefore, the aim of this study was to investigate the association between childhood maltreatment and tasks of verbal memory and processing speed in a help-seeking sample of an early detection of psychosis service. <b><i>Methods:</i></b> A total of 274 participants consisting of 177 clinical high risk (CHR) for psychosis subjects and 97 clinical controls (CC) with subthreshold CHR underwent a battery of neurocognitive assessments measuring the latent variables verbal memory and processing speed. Additionally, the Trauma and Distress Scale (TADS) was administered to assess varying childhood maltreatment subtypes. Structural equation modeling (SEM) was used to examine associations between verbal memory, processing speed, and maltreatment subtypes. Other factors in the model were age, gender, clinical group (CHR or CC), and the presence of different CHR criteria. <b><i>Results:</i></b> Physical abuse was associated with lower scores in verbal memory and processing speed. The explained variance in the SEM reached up to 9.5% for verbal memory and 24.9% for processing speed. Both latent variables were each associated with the presence of cognitive-perceptive basic symptoms. Lower verbal memory was additionally associated with the clinical high-risk group, and processing speed capacity was associated with higher age and female gender. <b><i>Conclusion:</i></b> Childhood physical abuse in particular was associated with poorer performance on verbal memory and processing speed across both groups of CHR and CC with subthreshold CHR symptoms. This adds to the current literature on reduced cognitive abilities when childhood maltreatment had occurred, albeit subtype dependent. Our findings, together with high prevalence rates of childhood maltreatment in patients with psychosis or CHR states, along with the presence of cognitive deficits in these patients, highlight the importance of not only assessing cognition but also childhood maltreatment in managing these patients. Future research should investigate the specific biological mechanisms of childhood maltreatment on verbal memory and processing speed in CHR subjects, as neurobiological alterations might explain the underlying mechanisms.
DOI: 10.17632/5khrrds6yg
title: Dataset: Spatial metrics in the analysis of the dynamics of urban landscape patterns in Mangaluru, India

description: This dataset contains spatial indicators calculated for Mangaluru built-up area from the Fragstats program in excel sheets and class descriptive files used as input for calculating spatial metrics. The spatial metrics were calculated for 8 directions from the central business district of the study area for the year 1972, 1990, 2000 and 2018. The research intends to comprehend the spatial configurations of the built-up patches in the study area using spatial metrics. The excel tables provide the unstructured output data from the Fragstats program. These tables can be used to get insights into the data out from the program and the class descriptor files can be used as a reference to understand and prepare land use and land cover class descriptors of the respective study area.
DOI: 10.17632/g83z9jf4c7
title: Resultados da aplicação da TRI nos microdados do ENADE de 2021 para os cursos da área da computação e TIC

description: Esta base de dados abrangente contém os resultados detalhados da aplicação da Teoria de Resposta ao Item (TRI) aos microdados do Exame Nacional de Desempenho dos Estudantes (ENADE) de 2021, especificamente para os cursos da área de Computação e Tecnologias da Informação e Comunicação (TIC).
DOI: 10.17632/rbn6nmygcn
title: A Kiswahili dataset

description: The dataset contains text and audio files.The dataset contains 1,570 text files,and 1,570 audio files.The text files were collected from Kiswahili newspapers, articles, short story excerpts, and novels. The dataset contains 23,487 Kiswahili words. The words were then transcribed into mean words of 14.96 per text file and saved in CSV format. Each text file was divided into three parts: unique id, transcribed words, and normalized words. A unique id is a number assigned to each text file. The transcribed words are the text spoken by a reader. Normalized texts are the expansion of abbreviations, numbers, and the letter-sequence into full words. A recording per line was made for each text file and assigned a unique id, same as the text file. The audio recording was made in the audacity software using a professional microphone in a least-noisy environment. The audio length for each recording lasted between 1s to 12.5s. .Each audio file's properties include a sampling rate of 22.05 kHz and 16-bit single-channel unsigned PCM. The audio and the text file created meet the required properties for use in building a TTS system.
DOI: 10.25452/figshare.plus.25112837.v1
title: Dataset supporting Figure 2 in "Pan-cortical 2-photon mesoscopic imaging and neurobehavioral alignment in awake, behaving mice"

description: Contains data from a single 1-photon widefield imaging experiment and a single Thorlabs mesoscope 2-photon imaging session from the same dorsal mount mouse, corresponding to panels a-c and d of Figure 2, respectively. Included files contain imaging data, behavioral data, and python files with combined neurobehavioral data.Note that session names have the following format: "mouse#_bigEndianDate_cage#_info_session#_attempt#".Raw mesoscope imaging data is included in ScanImage rendered format as single big tiffs with the following nomenclature: "filename_2D.tiff".Mouse face and body cam images are included as standalone or concatenated .avi movie files, and behavioral data is included both as Spike2 files (smrx) and in exported form at Matlab data files (.mat).In all cases the first frame of the 2-photon movie, the right face/body movie, and Spike2 data are aligned to the first Labview-issued frameclock trigger (also recorded in Spike2, along with all other frameclock events). 2-photon triggers were sometimes incorrectly recorded in Spike2 (generally we recorded these as both events and waveforms), but were in all cases additionally exported from ScanImage tiff metadeta as timestamps (csv files ending in <i>header.csv). </i>Session start-time timestamps, also exported from ScanImage tiff metadata, appear as .txt files ending in "_starttime.txt".Preprocessed data (python) can be found in npy files with various names, each containing different subsets of variables relevant to the analysis. For each session, the npy file containing the string "standard_frames" contains the most complete, final stage set of preprocessed neurobehavioral data (in combined DataFrame format, exportable to nwb), including CCF/MMM alignments. The file containing the string "nb_dump" contains a large set of auxilliary variables that may be needed for additional preprocessing.Additional image files (tiff, png) and excel worksheets (xlsx, csv) containing high-level data summaries and records of intermediate analysis steps are also included.Please contact the authors for any additional clarifications as needed.See related materials in Collection at: https://doi.org/10.25452/figshare.plus.c.7052513
DOI: 10.6084/m9.figshare.11346875.v2
title: arabidopsis_2029_Maf001_filter95

description: arabidopsis_2029_Maf001_filter95 <br>
DOI: 10.6084/m9.figshare.21900327.v2
title: Publish or Perish Crossref of Jurnal Manajemen Stratejik dan Simulasi Bisnis, ISSN 2746-6868

description: <strong>Jurnal Manajemen Stratejik dan Simulasi Bisnis, ISSN 2746-6868</strong> <strong>Search terms</strong> <strong>Publication name:</strong> Jurnal Manajemen Stratejik dan Simulasi Bisnis<br> <strong>ISSN:</strong> 2746-6868<br> <strong>Years:</strong> all<br> <br> <strong>Data retrieval</strong> <strong>Data source:</strong> Crossref<br> <br> <strong>Metrics</strong> <strong>Results</strong>
DOI: 10.6084/m9.figshare.22121477.v1
title: Lending Club

description: This dataset is a modified version of the Kaggle Lending Club dataset found at https://www.kaggle.com/datasets/wordsforthewise/lending-club <br> The data contains 2007 through 2018 Lending Club accepted and rejected loan data. <br> The dataset is licenced under CC0 1.0 Universal (CC0 1.0) Public Domain Dedication https://creativecommons.org/publicdomain/zero/1.0/
DOI: 10.6084/m9.figshare.28963478.v1
title: van Hall_Aerobic Scope_Temperature Preference_Data.xlsx

description: This study measured both physiological (standard and maximum metabolic rates, aerobic scope, and swimming performance) and behavioral (temperature preference) responses of the yellow tang (<i>Zebrasoma flavescens</i>) to elevated sea surface temperatures. For further explanation of terms and methodology, please refer to the corresponding Journal of Comparative Physiology B paper by van Hall and Korsmeyer.
DOI: 10.6084/m9.figshare.19948535.v1
title: Genomic annotation of BMA64-1A, SEY6210, BY4742, BY4741, X2180-1A and S288C strains: GFF format

description: - Here is presented the full annotation of genomic sequences used in the differential expression analysis. - These data also appraised annotations of tRNAs, TEs, and lncRNAs. - The annotation of the <em>de novo</em> assembled BMA64-1A strain (NCBI BioProject number PRJNA727478) is also here presented.
DOI: 10.6084/m9.figshare.25284637.v1
title: Participants Data F1000Research.xlsx

description: Obesity is a complex condition influenced by both genetic and environmental factors. While several studies have explored the genetic basis of obesity in diverse populations, little is known about its genetic underpinnings specifically in the Jordanian population. To address this gap, our study aims to unravel the genetic determinants of obesity among Jordanian individuals.Using a Genome-wide Association Study (GWAS) approach, we will investigate the occurrence and frequency of genetic variants associated with obesity in a cohort of 150 unrelated Jordanian adults. Participants will be categorized into three groups based on their body mass index (BMI): obese, overweight, and normal-weight subjects. Through high-resolution melt analysis (HRMA), we will genotype participants for specific single nucleotide polymorphisms (SNPs) known to be linked with obesity susceptibility genes, including rs2167270 in the LEP gene and rs1137100 in the LEPR gene.Our analysis will explore the association between these genetic variants and various phenotypic characteristics, including obesity risk, BMI, anthropometric measurements (weight, height), and metabolic parameters such as total cholesterol, HDL-cholesterol, LDL-cholesterol, triglycerides, and blood glucose levels.Preliminary results indicate a significant association between obesity risk and the rs2167270 mutation in the LEP gene, suggesting its potential role in predisposing individuals to obesity. Additionally, we observed marginal associations with BMI and glucose blood levels, as well as weak associations with cholesterol levels and the rs1137100 mutation in the LEPR gene.These findings shed light on the genetic factors contributing to obesity susceptibility and its related metabolic traits in the Jordanian population. Understanding the genetic architecture of obesity in this demographic could pave the way for personalized prevention and intervention strategies tailored to the Jordanian population. Further validation studies involving larger cohorts are essential to confirm and expand upon these initial findings.
DOI: 10.6084/m9.figshare.26809234.v1
title: dataset for model

description: This is a dataset for model
DOI: 10.6084/m9.figshare.27160704.v1
title: <b>Comparison of healthy lifestyle behaviors of European and Asian nursing students</b>

description: Purpose: To compare the healthy lifestyle behaviors of European and Asian nursing students in order to provide valuable information in terms of revealing the effects of different cultural and socioeconomic structures on health behaviors. Methods: The research is a comparative cross-sectional study with 462 Turkish nursing students and 429 Spanish nursing (N = 891). Data was collected with a questionnaire consisting of 15 socio-demographic questions and the Health-Promoting Lifestyle Profile-II. Descriptive statistics and tests of mean differences were carried out on the data collected. Ethical committee permission was obtained in all participating countries.Results: The European nursing students showed healthier lifestyles (134.73 ± 18.62) in comparison with Asians (125.43 ± 21.80; p &lt; .001), especially in spiritual growth (26.20 ± 4.65 vs. 24.60 ± 4.93; p &lt; .001), physical activity (19.00 ± 5.18 vs. 17.27 ± 4.71; p &lt; .001), interpersonal relationships (27.27 ± 4.26 vs. 24.68 ± 4.74; p &lt; .001) and nutrition (23.61 ± 4.14 vs. 19.58 ± 4.01; p &lt; .001). Nevertheless, health responsibility is higher in Asians (20.63 ± 4.72 vs. 20.47 ± 4.05; p = .590) as well as stress management (18.68 ± 3.79 vs. 18.19 ± 3.63; p = .051). Asians smoke a higher number of cigarettes and their body max index is higher while Europeans have a higher alcohol consumption (p &lt; .001).Conclusion: Our study showed that the lifestyle is healthier in European nursing students who live in Spain in comparison with Asian nursing students who live in Turkey. These results show us some areas of intervention to improve lifestyles. In Turkey the smoking cessation, the sports activities and the healthy nutrition have to be promoted while in Spain the decrease in alcohol consumption is the key to have a healthy lifestyle.
DOI: 10.6084/m9.figshare.3494822.v1
title: LiMP data.sav

description: The data pertains to the Literacy in Musculoskeletal Problems questionnaire for use in a Mokken analysis.<br>
DOI: 10.17632/dtzfwv5vf2
title: Data for: Valuing the Urban Hukou in China:Evidence from a Regression Discontinuity Design for Housing Price