cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11784408
title: Additional file 1 of PDAC-ANN: an artificial neural network to predict pancreatic ductal adenocarcinoma based on gene expression

description: Additional file 1: Table S1. Microarray gene expression results from the six studies here. Excel file with information of spot ID, adjusted p-value ≤0.05, |log2FC| ≥ 1,Gene symbol, Gene.ID (ENTREZ_GENE_ID).
DOI: 10.6084/m9.figshare.11784408.v1
title: Additional file 1 of PDAC-ANN: an artificial neural network to predict pancreatic ductal adenocarcinoma based on gene expression

description: Additional file 1: Table S1. Microarray gene expression results from the six studies here. Excel file with information of spot ID, adjusted p-value ≤0.05, |log2FC| ≥ 1,Gene symbol, Gene.ID (ENTREZ_GENE_ID).
DOI: 10.6073/pasta/53f4dea6d9cc028760859d386be6169c
title: SBC LTER: Reef: Long-term experiment: Kelp removal: Understory kelp allometrics

description: These data consist of measurements used to estimate the mass of individual adult Pterygophora californica and Laminaria farlowiiat SBC LTER long-term kelp removal experiment sites. The mass of individual P. californicais estimated from the number of blades having a length &gt; 30 cm, whereas the mass of L. farlowiiis estimated from the length of its single blade. Measurements are recorded for up to 30 individuals of each species per 40 m x 2 m transect sampled in each sampling plot. These data are combined with allometric relationships established in the laboratory to provide non-destructive estimates of dry mass for the two species. The kelp removal experiment was initiated in 2008 at four reef sites along the mainland coast of the Santa Barbara Channel. The following three giant kelp manipulations are maintained in sampling plots at each site: - Control: Macrocystis pyriferais left intact in a 2000 m2 plot. - Annual removal: Macrocystis pyriferais removed from an adjacent 2000 m2 plot once each winter and allowed to re-colonize over the course of the year. - Continuous removal: Macrocystis pyriferais removed from a 200 m2 area within the 2000 m2 plot on each sampling date.
DOI: 10.6084/m9.figshare.11784324
title: Additional file 6 of Basal hsp70 expression levels do not explain adaptive variation of the warm- and cold-climate O3 + 4 + 7 and OST gene arrangements of Drosophila subobscura

description: Additional file 6. Raw gene expression data.
DOI: 10.6084/m9.figshare.11784324.v1
title: Additional file 6 of Basal hsp70 expression levels do not explain adaptive variation of the warm- and cold-climate O3 + 4 + 7 and OST gene arrangements of Drosophila subobscura

description: Additional file 6. Raw gene expression data.
DOI: 10.6084/m9.figshare.11784291
title: Additional file 3 of Genomic profiles and transcriptomic microenvironments in 2 patients with synchronous lung adenocarcinoma and lung squamous cell carcinoma: a case report

description: Additional file 3: Table S1. Non-synonymous mutations of P1 and P2. Table S2. Gene expressions (FPKM) of P1.
DOI: 10.6084/m9.figshare.11784291.v1
title: Additional file 3 of Genomic profiles and transcriptomic microenvironments in 2 patients with synchronous lung adenocarcinoma and lung squamous cell carcinoma: a case report

description: Additional file 3: Table S1. Non-synonymous mutations of P1 and P2. Table S2. Gene expressions (FPKM) of P1.
DOI: 10.6084/m9.figshare.11784243
title: Additional file 2 of A web application for the design of multi-arm clinical trials

description: Additional file 2 Analytical vs. simulated operating characteristics comparison. R code to replicate our comparison of the analytical operating characteristics returned by the web application against those based on simulation.
DOI: 10.6084/m9.figshare.11784243.v1
title: Additional file 2 of A web application for the design of multi-arm clinical trials

description: Additional file 2 Analytical vs. simulated operating characteristics comparison. R code to replicate our comparison of the analytical operating characteristics returned by the web application against those based on simulation.
DOI: 10.6084/m9.figshare.11783727
title: pH-dependent two Cd(II) coordination architectures with methyl-3-hydroxy-5-carboxy-2-thiophenecarboxylate and 1,3-bis(4-pyridyl)propane mixed ligands: syntheses, crystal structures, and photoluminescent properties

description: Two new Sulfur-containing cadmium(II) coordination polymers {[Cd(HL)<sub>2</sub>](bpp)}<sub>n</sub> (<b>1</b>) and {[Cd(L)(bpp)(H<sub>2</sub>O)]}<sub>n</sub> (<b>2</b>) (H<sub>2</sub>L = methyl-3-hydroxy-5-carboxy-2-thiophenecarboxylate, and bpp = 1,3-bis(4-pyridyl)propane) have been synthesized under different pH conditions and structurally characterized by the single-crystal X-ray diffraction and other physicochemical techniques. Structural analyses reveal that compound <b>1</b> exhibits a 1D double chain structure based upon dimeric [Cd<sub>2</sub>(COO)<sub>2</sub>] subunit. Compound <b>2</b> features a 3D network which can be rationalized as a 3-fold 4-connected <i>dia</i> net. It is shown that the pH plays a crucial role in the formation of the resulting structures. Furthermore, solid photoluminescent properties of the two compounds make them potentially useful photoactive materials.
DOI: 10.6084/m9.figshare.11783724
title: Raw data_dataset.rar

description: genome-wide characterization of 298 F-box family proteins were performed based on reference genome of <i>C. clementina</i>,<i> </i>which supported perspectives for identification the S-locus <i>F-box</i> lineage genes. Thirteen <i>F-box</i> genes homologous with SFBB/SLFL/SLF were specifically expressed in mature pollen of ‘Wuzishatangju’(<i>Citrus reticulata</i>). CrSKP1-e could connect CrFBX proteins and two CrCUL1 proteins (CrCUL1A and CrCUL1B) for assembling SCF<sup> </sup>complex in pollen of ‘Wuzishatangju’.
DOI: 10.6084/m9.figshare.11783727.v1
title: pH-dependent two Cd(II) coordination architectures with methyl-3-hydroxy-5-carboxy-2-thiophenecarboxylate and 1,3-bis(4-pyridyl)propane mixed ligands: syntheses, crystal structures, and photoluminescent properties

description: Two new Sulfur-containing cadmium(II) coordination polymers {[Cd(HL)<sub>2</sub>](bpp)}<sub>n</sub> (<b>1</b>) and {[Cd(L)(bpp)(H<sub>2</sub>O)]}<sub>n</sub> (<b>2</b>) (H<sub>2</sub>L = methyl-3-hydroxy-5-carboxy-2-thiophenecarboxylate, and bpp = 1,3-bis(4-pyridyl)propane) have been synthesized under different pH conditions and structurally characterized by the single-crystal X-ray diffraction and other physicochemical techniques. Structural analyses reveal that compound <b>1</b> exhibits a 1D double chain structure based upon dimeric [Cd<sub>2</sub>(COO)<sub>2</sub>] subunit. Compound <b>2</b> features a 3D network which can be rationalized as a 3-fold 4-connected <i>dia</i> net. It is shown that the pH plays a crucial role in the formation of the resulting structures. Furthermore, solid photoluminescent properties of the two compounds make them potentially useful photoactive materials.
DOI: 10.6084/m9.figshare.11783724.v1
title: Raw data_dataset.rar

description: genome-wide characterization of 298 F-box family proteins were performed based on reference genome of <i>C. clementina</i>,<i> </i>which supported perspectives for identification the S-locus <i>F-box</i> lineage genes. Thirteen <i>F-box</i> genes homologous with SFBB/SLFL/SLF were specifically expressed in mature pollen of ‘Wuzishatangju’(<i>Citrus reticulata</i>). CrSKP1-e could connect CrFBX proteins and two CrCUL1 proteins (CrCUL1A and CrCUL1B) for assembling SCF<sup> </sup>complex in pollen of ‘Wuzishatangju’.
DOI: 10.6084/m9.figshare.11783673.v1
title: SHEN_DATA_JGR_2020

description: <b>One can use this dataset to observe internal tides and near-inertial waves in the northern South China Sea.</b><br>
DOI: 10.6084/m9.figshare.11783661
title: Electron microscopy dataset for the recognition of nanoscale ordering effects and location of nanoparticles — Dataset 1 (ordered)

description: The dataset contains Scanning Electron Microscopy (SEM) images of palladium nanoparticles attached on carbon surface in predominantly ordered fashion. A basic code example and metadata files are provided. For description, see the article: D.A. Boiko, E.O. Pentsak, V.A. Cherepanova, V.P. Ananikov, Scientific Data, 2020.
DOI: 10.6084/m9.figshare.11783667
title: Electron microscopy dataset for the recognition of nanoscale ordering effects and location of nanoparticles — Dataset 2 (disordered)

description: The dataset contains Scanning Electron Microscopy (SEM) images of palladium nanoparticles attached on carbon surface in predominantly disordered fashion. A basic code example and metadata files are provided. For description, see the article: D.A. Boiko, E.O. Pentsak, V.A. Cherepanova, V.P. Ananikov, Scientific Data, 2020.
DOI: 10.6084/m9.figshare.11783616
title: Data for the paper entitled "The mitochondrial derived peptide humanin is a regulator of lifespan and healthspan"

description: This is the data for the figures in this paper.
DOI: 10.6084/m9.figshare.11783616.v1
title: Data for the paper entitled "The mitochondrial derived peptide humanin is a regulator of lifespan and healthspan"

description: This is the data for the figures in this paper.
DOI: 10.6084/m9.figshare.11783544
title: Understory Biomass from Longleaf Study

description: Understory biomass weights from clip plots at JCI. There are 4 plots within each flux tower footprint that each have 5 subplots.<br>Biomass was dried for minimum of 48 hours at 72 <sup>o</sup>C.
DOI: 10.6084/m9.figshare.11783472
title: Longleaf DBH data for biomass estimates

description: This is annual DBH data for JCI survey plots that are found within each eddy covariance tower foot print (n=4).<br>xeric = Red Dirtintermediate = Dubinonmesic = Baker Woods
DOI: 10.6084/m9.figshare.11783466
title: Mesic Site Soil respiration

description: Soil respiration data collected with LiCor 8100 8 chamber system. Data from a soil moisture gradient.<br>mesic = Baker Woods Site
DOI: 10.6084/m9.figshare.11783466.v1
title: Mesic Site Soil respiration

description: Soil respiration data collected with LiCor 8100 8 chamber system. Data from a soil moisture gradient.<br>mesic = Baker Woods Site
DOI: 10.6084/m9.figshare.11783544.v1
title: Understory Biomass from Longleaf Study

description: Understory biomass weights from clip plots at JCI. There are 4 plots within each flux tower footprint that each have 5 subplots.<br>Biomass was dried for minimum of 48 hours at 72 <sup>o</sup>C.
DOI: 10.6084/m9.figshare.11783463
title: Xeric site soil Respiration data

description: Soil respiration data collected with LiCor 8100 8 chamber system. Data from a soil moisture gradient.<br>xeric = Red Dirt site
DOI: 10.6084/m9.figshare.11783472.v1
title: Longleaf DBH data for biomass estimates

description: This is annual DBH data for JCI survey plots that are found within each eddy covariance tower foot print (n=4).<br>xeric = Red Dirtintermediate = Dubinonmesic = Baker Woods
DOI: 10.6084/m9.figshare.11782377
title: Intermediate site soil respiration

description: This is soil respiration data collect from our three sites using a LiCor Li-8100 8 chamber system. Sites are along a moisture gradient. This is compiled data<br><br>intermediate = Dubinon<br>
DOI: 10.6084/m9.figshare.11783463.v1
title: Xeric site soil Respiration data

description: Soil respiration data collected with LiCor 8100 8 chamber system. Data from a soil moisture gradient.<br>xeric = Red Dirt site
DOI: 10.6084/m9.figshare.11782377.v1
title: Intermediate site soil respiration

description: This is soil respiration data collect from our three sites using a LiCor Li-8100 8 chamber system. Sites are along a moisture gradient. This is compiled data<br><br>intermediate = Dubinon<br>
DOI: 10.6084/m9.figshare.11782290
title: Climate Science and Intuition Project

description: These are the supplementary materials referred to in a paper about using remote viewing to stimulate ideas for climate change scientists. This Zip file contains the remote viewing sessions (not the post-interviews, which were informal and only for one viewer, Woody).
DOI: 10.6084/m9.figshare.11782320.v1
title: Viz Dump Data Simulations (Pinch model)

description: Simulation results 1-99 for the Pinch model
DOI: 10.6084/m9.figshare.11782320.v2
title: Viz Dump Data Simulations (Pinch model)

description: Simulation results 1-187 for the Pinch model
DOI: 10.6084/m9.figshare.11782320.v3
title: Viz Dump Data Simulations (Pinch model)

description: Simulation results 1-210 for the Pinch model
DOI: 10.6084/m9.figshare.11782203
title: TECHS - MS-DART-seq files

description: Input files to support the paper: "Patterns of DNA methylation changes in elite Eucalyptus clones across contrasting environments."<br>The code to reproduce the results presented in the paper can be find at GitHub: https://github.com/wendelljpereira/techs_ms_dart_seq<br>Besides the deposited data, it is necessary the download of the <i>E. grandis</i> genome and genome annotation v.2.0 ( (Egrandis_297_v2.0.softmasked.fa; Egrandis_297_v2.0.gene_exons.gff3) from Phytozome (https://phytozome.jgi.doe.gov/pz/portal.html) to reproduce all results.<br>
DOI: 10.6084/m9.figshare.11782206.v1
title: Songhua River Regime

description: Methods 1) Measure the selected cross-section of the river channel near the hydrological station. 2) Determine the bankfull water level based on the bank of the measured cross-section. 3) The bankfull discharge is determined according to the water level-discharge relationship of the hydrological station. Usage Notes The parameter of the characteristic length l<sub>d</sub> in the second page can be get through the calculation of the sum of the bed load and suspended load transport rate.
DOI: 10.6084/m9.figshare.11782320.v6
title: Viz Dump Data Simulations (Pinch model)

description: Simulation results 1-260 for the Pinch model
DOI: 10.6084/m9.figshare.11782128
title: Phenotypic variation in mitochondria-related performance traits across New Zealand snail populations

description: Dataset associated with Greimann et al., 2020 Integrat. Comp. Biol. comparing mitochondrial membrane potential, oxygen consumption, righting ability, and emergence across source populations, reproductive modes, and sexes of the New Zealand Freshwater snail, <i>Potamopyrgus antipodarum</i><br>
DOI: 10.6084/m9.figshare.11782320
title: Viz Dump Data Simulations (Pinch model) Simulations 1-500

description: Simulation results 1-500 for the Pinch model
DOI: 10.6084/m9.figshare.11782128.v1
title: Phenotypic variation in mitochondria-related performance traits across New Zealand snail populations

description: Dataset associated with Greimann et al., 2020 Integrat. Comp. Biol. comparing mitochondrial membrane potential, oxygen consumption, righting ability, and emergence across source populations, reproductive modes, and sexes of the New Zealand Freshwater snail, <i>Potamopyrgus antipodarum</i><br>
DOI: 10.6084/m9.figshare.11782320.v10
title: Viz Dump Data Simulations (Pinch model) Simulations 1-500

description: Simulation results 1-500 for the Pinch model
DOI: 10.6084/m9.figshare.11782320.v9
title: Viz Dump Data Simulations (Pinch model)

description: Simulation results 1-500 for the Pinch model
DOI: 10.6084/m9.figshare.11780658
title: Chromosome-scale genome assembly of the sea louse Caligus rogercresseyi

description: Sea lice are marine copepods that contribute to substantial economic loss for salmon aquaculture worldwide. In Chile, Caligus rogercresseyi is the primary species found on Atlantic salmon farms that also impacts native fish species. In this study, we report a chromosome-scale assembly of the sea louse (C. rogercresseyi) genome based on single-molecule real-time sequencing (SMRT) and proximity ligation (Hi-C) analysis. Coding RNAs and non-coding RNAs, and specifically long non-coding RNAs (lncRNAs) and microRNAs (miRNAs) were identified through whole transcriptome sequencing from different life stages. A total of 23,686 protein-coding genes and 12,558 non-coding RNAs were annotated. In addition, 6,308 lncRNAs and 5,774 miRNAs were found to be transcriptionally active from larvae to adult stages. Taken together, this genomic resource for C. rogercresseyi represents a valuable tool to develop sustainable control strategies in the salmon aquaculture industry
DOI: 10.6084/m9.figshare.11781801
title: DATA RAW NATURE GEOSCIENCE FINAL.xlsx

description: raw data explained by the description file<br>
DOI: 10.6084/m9.figshare.11781801.v1
title: DATA RAW NATURE GEOSCIENCE FINAL.xlsx

description: raw data explained by the description file<br>
DOI: 10.6084/m9.figshare.11780658.v1
title: Chromosome-scale genome assembly of the sea louse Caligus rogercresseyi

description: Sea lice are marine copepods that contribute to substantial economic loss for salmon aquaculture worldwide. In Chile, Caligus rogercresseyi is the primary species found on Atlantic salmon farms that also impacts native fish species. In this study, we report a chromosome-scale assembly of the sea louse (C. rogercresseyi) genome based on single-molecule real-time sequencing (SMRT) and proximity ligation (Hi-C) analysis. Coding RNAs and non-coding RNAs, and specifically long non-coding RNAs (lncRNAs) and microRNAs (miRNAs) were identified through whole transcriptome sequencing from different life stages. A total of 23,686 protein-coding genes and 12,558 non-coding RNAs were annotated. In addition, 6,308 lncRNAs and 5,774 miRNAs were found to be transcriptionally active from larvae to adult stages. Taken together, this genomic resource for C. rogercresseyi represents a valuable tool to develop sustainable control strategies in the salmon aquaculture industry
DOI: 10.6084/m9.figshare.11780649
title: 1

description: Annotated features for the genome assembly
DOI: 10.6084/m9.figshare.11780124
title: TABLA 2.png

description: TIEMPOS DE LINEA DE ESAMBLE DE PLACAS DE BATERIAS PLOMO-ACIDO
DOI: 10.6084/m9.figshare.11780103
title: Cannabinoid and terpene data for 10.6084/m9.figshare.11778936

description: Terpene and cannabinoiud data for a subset of 120 samples from Las Vegas, Nevada.
DOI: 10.6084/m9.figshare.11780124.v1
title: TABLA 2.png

description: TIEMPOS DE LINEA DE ESAMBLE DE PLACAS DE BATERIAS PLOMO-ACIDO
DOI: 10.6084/m9.figshare.11780649.v2
title: Caligus rogercresseyi genome annotation

description: Annotated features for the genome assembly
DOI: 10.6084/m9.figshare.11779653
title: Data from: Characterization of lignocellulose of Opuntia (Cactaceae) species using FTIR spectroscopy: possible candidates for renewable raw material

description: Data from cladodes from three <i>Opuntia</i> species.
DOI: 10.6084/m9.figshare.11780649.v1
title: Caligus rogercresseyi genome assembly and annotations

description: Annotated features for the genome assembly
DOI: 10.6084/m9.figshare.11778924
title: Supplemental Data S2

description: Rockhopper analysis of <i>Variovorax paradoxus </i>EPS transcriptome data from exponential, stationary phase, and biofilm culture. Output as text files and .wig files for viewing on the Integrated Genome Viewer created by the Broad Institute.
DOI: 10.6084/m9.figshare.11778924.v1
title: Supplemental Data S2

description: Rockhopper analysis of <i>Variovorax paradoxus </i>EPS transcriptome data from exponential, stationary phase, and biofilm culture. Output as text files and .wig files for viewing on the Integrated Genome Viewer created by the Broad Institute.
DOI: 10.6084/m9.figshare.11779653.v1
title: Data from: Chemical characterization, quantification of lignocellulosics and crystallinity indexes in three Opuntia species with industrial and biofuels potential

description: Data from cladodes from three <i>Opuntia</i> species.
DOI: 10.6084/m9.figshare.11779653.v2
title: Data from: Characterization of lignocellulose of Opuntia (Cactaceae) species using FTIR spectroscopy: possible candidates for renewable raw material

description: Data from cladodes from three <i>Opuntia</i> species.
DOI: 10.6084/m9.figshare.11778921
title: Supplemental Data S1

description: Comparative analysis of output from the DESeq2 software suite for gene expression analysis performed on the Galaxy platform using <i>Variovorax paradoxus </i>EPS cultures in exponential, stationary, and biofilm growth.
DOI: 10.6084/m9.figshare.11778897
title: TABLA 1.png

description: La presente tabla de datos contiene los tiempos estipulados para la fabricación de placas de baterías plomo-ácido
DOI: 10.6084/m9.figshare.11778900
title: Metadata record for: A dataset of radar-recorded heart sounds and vital signs including synchronised reference sensor signal

description: This dataset contains key characteristics about the data described in the Data Descriptor A dataset of radar-recorded heart sounds and vital signs including synchronised reference sensor signal. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br><br>
DOI: 10.6084/m9.figshare.11778921.v1
title: Supplemental Data S1

description: Comparative analysis of output from the DESeq2 software suite for gene expression analysis performed on the Galaxy platform using <i>Variovorax paradoxus </i>EPS cultures in exponential, stationary, and biofilm growth.
DOI: 10.6084/m9.figshare.11778897.v2
title: TABLA 1.png

description: La presente tabla de datos contiene los tiempos estipulados para la fabricación de placas de baterías plomo-ácido
DOI: 10.6084/m9.figshare.11778900.v1
title: Metadata record for: A dataset of radar-recorded heart sounds and vital signs including synchronised reference sensor signal

description: This dataset contains key characteristics about the data described in the Data Descriptor A dataset of radar-recorded heart sounds and vital signs including synchronised reference sensor signal. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.11778885
title: The clinical and humanistic burden of cutaneous T-cell lymphomas and response to conventional and novel therapies: results of a systematic review

description: <b>Objectives</b>: To summarize the impact of relapsed/refractory primary cutaneous T-cell lymphomas (CTCL) on quality of life (QoL) and the efficacy of available treatments in two systematic reviews (SRs). <b>Methods</b>: Searches were performed on 16 January 2018 and 23 January 2018, respectively, in Medline, Medline in process, the Cochrane database, and EconLit. Studies reporting QoL outcomes in adults with CTCL or treatment efficacy in relapsed/refractory CTCL were included. <b>Results</b>: Based on 15 QoL studies, CTCL symptoms/complications negatively affect patients’ physical, emotional, and social functioning. Skin problems pose considerable symptom burden, while advanced disease stage is associated with poorer QoL. CTCL negatively affects caregivers, primarily through family dynamics and relationships. The clinical efficacy SR included 72 publications covering 23 therapies. Overall response rate (ORR) ranged from 14% (belinostat) to 95% (total skin electron beam therapy). ORRs &gt;50% were reported for several therapies including brentuximab vedotin (50–78%) and bexarotene (39–86%). Over half (13 of 23 therapies) had ORRs &lt;30%. Median progression-free survival varied between treatments (3.5–116.4 months) and was &gt;20 months for brentuximab vedotin and alemtuzumab. <b>Conclusion</b>: CTCL negatively affects patients’ and caregivers’ QoL. A considerable proportion of patients have no response or no sustainable response to current treatments.
DOI: 10.6084/m9.figshare.11778897.v1
title: TABLA 1.png

description: La presente tabla de datos contiene los tiempos estipulados para la fabricación de placas de baterías plomo-ácido