cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20736603.v1
title: Robust multivariate lasso regression with covariance estimation

description: Multivariate regression with covariance estimation (MRCE) is a method that performs sparse estimation of multivariate regression coefficients, while taking account the covariance structure of the response variables. MRCE utilizes a penalized likelihood approach to simultaneously estimate the regression coefficients and the inverse covariance matrix so that prediction accuracy can be significantly improved. However, traditional likelihood-based methods such as MRCE can produce very misleading results in the presence of outliers. In this work, we propose an extension of MRCE, namely, a robust multivariate lasso regression with covariance estimation (RMLC) to handle potential outliers within the data. By using Huber’s loss or Tukey’s biweight loss, RMLC can be resistant to outliers in the responses or in both the responses and the covariates. A novel optimization algorithm that incorporates a two-fold accelerated proximal gradient (APG) algorithm is developed to solve RMLC efficiently. We also demonstrate that our proposed RMLC enjoys the oracle property. Our simulation study shows that RMLC produces very reliable results for both the regression coefficients and the correlation structure of the responses, even if the data are contaminated. A real analysis on hyperspectral data further demonstrates the utility of RMLC.
DOI: 10.25549/one-ouc17553461
title: Mattachine Society, International Committee for Sexual Equality (1955-1960)
DOI: 10.25549/one-ouc17553459
title: Mattachine Society, Janus Society (1963-1966)
DOI: 10.25549/one-ouc17553464
title: Mattachine Society, National League for Social Understanding (1961-1965)
DOI: 10.6084/m9.figshare.8157410.v1
title: Additional file 1: of RNA-seq data reveals a coordinated regulation mechanism of multigenes involved in the high accumulation of palmitoleic acid and oil in sea buckthorn berry pulp

description: Table S1. Primers used for qRT-PCR of multigenes involved in FA biosynthesis and TAG accumulation in sea buckthorn berry pulp. (XLSX 14 kb)
DOI: 10.25549/one-ouc17553466
title: Mattachine Society, Janus Society (1963-1966)
DOI: 10.25549/one-ouc17553465
title: Mattachine Society, International Committee for Sexual Equality (1955-1960)
DOI: 10.6084/m9.figshare.7629335
title: Identification and characterization of circular RNAs during the sea buckthorn fruit development

description: As a rising star of noncoding RNA, circular RNAs (circRNAs) have a covalently closed loop structure, which formed by 3ʹ-5ʹ ligation during splicing. A few circRNAs were identified and thought to be transcriptional noise due to cognitive defect over the past 40 years. Recently, with the development of high-throughput RNA sequencing techniques and specific algorithms for circRNA detection and quantification, plenty of potential circRNAs were identified in many species which play important roles in various biological processes. However, researches on circRNAs in fruit ripening process were lacking. Here, we totally identified 2616 circRNAs in sea buckthorn fruit development process, which uniformly distributed in sea buckthorn chromosome. Among them, 1721 (65.8%) circRNAs were arising from the exons of their host genes, 252 circRNAs were identified as the differentially expressed circRNAs (DEcircRNAs) between three different development stages, and 181 (71.8%) DEcircRNAs had sequence similarity with 235 identified circRNAs from five know plant species. Functional annotation revealed that host genes of DEcircRNAs were predicted to be involved in carotenoid biosynthesis, lipid synthesis and plant hormone signal transduction. Additionally, 53 DEcircRNAs were predicted as the corresponding nine miRNAs sponges in sea buckthorn. Divergent reverse-transcription PCR and RT-qPCR were used for validate the differential expression and back-splicing sites of six DEcircRNAs. These results revealed the role of circRNAs in sea buckthorn fruit ripening process and promoted the noncoding RNA researches in plants.
DOI: 10.25549/one-ouc17554459
title: Mattachine Society, Police-Community Relations, San Francisco (1967)
DOI: 10.6084/m9.figshare.8157428.v1
title: Additional file 3: of RNA-seq data reveals a coordinated regulation mechanism of multigenes involved in the high accumulation of palmitoleic acid and oil in sea buckthorn berry pulp

description: Table S3. Functional classifications of unigenes in developing berry pulps of sea buckthorn based on COG category and KEGG pathway. (XLSX 12 kb)
DOI: 10.25549/one-ouc17553469
title: Mattachine Society, National League for Social Understanding (1961-1965)
DOI: 10.6084/m9.figshare.12872357
title: Additional file 1 of Estimating breast tissue-specific DNA methylation age using next-generation sequencing data

description: Additional file 1. Coefficient values for the breast tissue-specific DNAm age model. This comma-delimited value (csv) text file contains the genomic location, model coefficients, and gene annotations for the set of 286 clock CpGs derived in this study.
DOI: 10.6084/m9.figshare.12872357.v1
title: Additional file 1 of Estimating breast tissue-specific DNA methylation age using next-generation sequencing data

description: Additional file 1. Coefficient values for the breast tissue-specific DNAm age model. This comma-delimited value (csv) text file contains the genomic location, model coefficients, and gene annotations for the set of 286 clock CpGs derived in this study.
DOI: 10.6084/m9.figshare.12872363
title: Additional file of Estimating breast tissue-specific DNA methylation age using next-generation sequencing data

description: Additional file of Estimating breast tissue-specific DNA methylation age using next-generation sequencing data
DOI: 10.6084/m9.figshare.14445130
title: Additional file 7 of An enhanced photosynthesis and carbohydrate metabolic capability contributes to heterosis of the cotton (Gossypium hirsutum) hybrid ‘Huaza Mian H318’, as revealed by genome-wide gene expression analysis

description: Additional file 7: Table S1. Basic quality of sequencing data. Table S2. Reads distribution and annotation in genome. Table S3. The FPKM value of annotated and novel genes. Table S4. All DEGs from RNA sequencing. Table S5. Significant GO terms in 945 DEGs screened with condition of p-value &lt; 0.05 and |log2(FPKM + 1.5)| &gt; 1. GO terms were listed with gene number ≥ 10, q-value &lt; 0.05. Table S6. KEGG pathway analysis of 945 DEGs with q-value &lt; 0.05 using KOBAS3.0 ( http://kobas.cbi.pku.edu.cn/ ). Table S7. The expression patterns of DEGs in GO terms ‘oxidation-reduction process’, ‘lipid metabolic process’ , ‘carbohydrate metabolic process’and ‘photosynthesis’. Table S8. The primers used in this study.
DOI: 10.6084/m9.figshare.8157434
title: Additional file 4: of RNA-seq data reveals a coordinated regulation mechanism of multigenes involved in the high accumulation of palmitoleic acid and oil in sea buckthorn berry pulp

description: Table S4. Differentially expressed genes for each of the 16 pairwise comparison groups. (XLSX 3263 kb)
DOI: 10.6084/m9.figshare.12872366
title: Additional file 3 of Estimating breast tissue-specific DNA methylation age using next-generation sequencing data

description: Additional file 3. R software tutorial. This file contains R software (https://cran.r-project.org/) which reads in Additional file 1 as well as user-provided DNAm data and returns the estimated DNAm ages for each sample within the user-provided data set.
DOI: 10.6084/m9.figshare.14445130.v1
title: Additional file 7 of An enhanced photosynthesis and carbohydrate metabolic capability contributes to heterosis of the cotton (Gossypium hirsutum) hybrid ‘Huaza Mian H318’, as revealed by genome-wide gene expression analysis

description: Additional file 7: Table S1. Basic quality of sequencing data. Table S2. Reads distribution and annotation in genome. Table S3. The FPKM value of annotated and novel genes. Table S4. All DEGs from RNA sequencing. Table S5. Significant GO terms in 945 DEGs screened with condition of p-value &lt; 0.05 and |log2(FPKM + 1.5)| &gt; 1. GO terms were listed with gene number ≥ 10, q-value &lt; 0.05. Table S6. KEGG pathway analysis of 945 DEGs with q-value &lt; 0.05 using KOBAS3.0 ( http://kobas.cbi.pku.edu.cn/ ). Table S7. The expression patterns of DEGs in GO terms ‘oxidation-reduction process’, ‘lipid metabolic process’ , ‘carbohydrate metabolic process’and ‘photosynthesis’. Table S8. The primers used in this study.
DOI: 10.25549/one-ouc17553468
title: Mattachine Society, First Church of One Brotherhood (1956-1957)
DOI: 10.6084/m9.figshare.13396630
title: A one-dimensional chiral gadolinium complex based on a tartaric acid derivative: crystal structure, thermal behavior and magnetic properties

description: A new chiral one-dimensional gadolinium coordination polymer [Gd(HDTTA)<sub>3</sub>(CH<sub>3</sub>OH)<sub>3</sub>]<sub>n</sub> (<b>1</b>) (D-H<sub>2</sub>DTTA = (+)-Di-p-toluoyl-D-tartaric acid) was synthesized at room temperature, and fully structurally characterized by Infrared (IR), elemental analysis (EA), single-crystal and powder X-ray diffraction (PXRD). The structure analysis shows that complex <b>1</b> belongs to the trigonal system with <i>R</i>3 space group and displays an infinite chain structure along the <i>c</i> axis. In <b>1</b>, each Gd<sup>3+</sup> cation is in the tri-capped trigonal prism geometry, and neighboring Gd<sup>3+</sup> cations are connected by three partly deprotonated HDTTA<sup>−</sup> ligands with the Gd···Gd distance of 7.686(1) Å. The circular dichroism (CD) spectrum demonstrates the chirality of the complex. Magnetic studies reveal that complex <b>1</b> displays weak antiferromagnetic interactions between Gd<sup>3+</sup> cations and it exhibits a small magnetic entropy change (−Δ<i>S</i><sub>m</sub> = 7.26 J kg<sup>−1</sup> K<sup>−1</sup> with Δ<i>H</i> = 7 T and <i>T</i> = 2.5 K) because of long Gd···Gd distance and relatively low magnetic density.
DOI: 10.6084/m9.figshare.13396630.v1
title: A one-dimensional chiral gadolinium complex based on a tartaric acid derivative: crystal structure, thermal behavior and magnetic properties

description: A new chiral one-dimensional gadolinium coordination polymer [Gd(HDTTA)<sub>3</sub>(CH<sub>3</sub>OH)<sub>3</sub>]<sub>n</sub> (<b>1</b>) (D-H<sub>2</sub>DTTA = (+)-Di-p-toluoyl-D-tartaric acid) was synthesized at room temperature, and fully structurally characterized by Infrared (IR), elemental analysis (EA), single-crystal and powder X-ray diffraction (PXRD). The structure analysis shows that complex <b>1</b> belongs to the trigonal system with <i>R</i>3 space group and displays an infinite chain structure along the <i>c</i> axis. In <b>1</b>, each Gd<sup>3+</sup> cation is in the tri-capped trigonal prism geometry, and neighboring Gd<sup>3+</sup> cations are connected by three partly deprotonated HDTTA<sup>−</sup> ligands with the Gd···Gd distance of 7.686(1) Å. The circular dichroism (CD) spectrum demonstrates the chirality of the complex. Magnetic studies reveal that complex <b>1</b> displays weak antiferromagnetic interactions between Gd<sup>3+</sup> cations and it exhibits a small magnetic entropy change (−Δ<i>S</i><sub>m</sub> = 7.26 J kg<sup>−1</sup> K<sup>−1</sup> with Δ<i>H</i> = 7 T and <i>T</i> = 2.5 K) because of long Gd···Gd distance and relatively low magnetic density.
DOI: 10.25549/one-ouc17553470
title: Mattachine Society, International Committee for Sexual Equality (1955-1960)
DOI: 10.6084/m9.figshare.8157446.v1
title: MOESM1 of Predicting the regrowth of clinically non-functioning pituitary adenoma with a statistical model

description: Additional file 1: Table S1. Antibody information involved in the research.
DOI: 10.25549/one-ouc17553471
title: Mattachine Society, International Committee for Sexual Equality (1955-1960)
DOI: 10.25549/one-ouc17553472
title: Mattachine Society, National Planning Conference of Homosexual Organizations (1966-1967)
DOI: 10.6084/m9.figshare.12872366.v1
title: Additional file 3 of Estimating breast tissue-specific DNA methylation age using next-generation sequencing data

description: Additional file 3. R software tutorial. This file contains R software (https://cran.r-project.org/) which reads in Additional file 1 as well as user-provided DNAm data and returns the estimated DNAm ages for each sample within the user-provided data set.
DOI: 10.25549/one-ouc17553473
title: Mattachine Society, National Planning Conference of Homosexual Organizations (1966-1967)
DOI: 10.25549/one-ouc17550193
title: Mattachine Society, correspondence, Albert J. de Dion (1959-1960)
DOI: 10.6084/m9.figshare.9730343
title: Additional file 1: of Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation

description: Table S1. The guide RNA and singlestranded Oligonucleotide DNA sequences, their concentrations and the length of genomic regions floxed (in bp) reportedÂ in this study. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.9730343.v1
title: Additional file 1: of Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation

description: Table S1. The guide RNA and singlestranded Oligonucleotide DNA sequences, their concentrations and the length of genomic regions floxed (in bp) reportedÂ in this study. (XLSX 29 kb)
DOI: 10.25549/one-ouc17550196
title: Mattachine Society, correspondence, Harold Call (1954-1959)

description: Mattachine Society, correspondence with Harold Call describing the activities of Mattachine Society chapters, membership, and the Mattachine Review; also includes a typescript of a presentation on "homosexuality in handwriting" (1954-1959)
DOI: 10.25549/one-ouc17550195
title: Mattachine Society, statement of the chairman of Board of Directors (1954)
DOI: 10.25549/one-ouc17550199
title: Mattachine Society, correspondence, Curtis Dewees (1956-1963)
DOI: 10.6084/m9.figshare.9730355
title: Additional file 2: of Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation

description: Table S2. The results of the two-donor floxing approach via microinjection for 49 unique loci. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.9730355.v1
title: Additional file 2: of Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation

description: Table S2. The results of the two-donor floxing approach via microinjection for 49 unique loci. (XLSX 21 kb)
DOI: 10.25549/one-ouc17550198
title: Mattachine Society, correspondence, Albert J. de Dion (1959-1960)
DOI: 10.6084/m9.figshare.9730358
title: Additional file 3: of Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation

description: Table S3. The results of the two-donor floxing approach via electroporation for 7 unique loci. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9730358.v1
title: Additional file 3: of Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation

description: Table S3. The results of the two-donor floxing approach via electroporation for 7 unique loci. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9730361
title: Additional file 4: of Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation

description: Table S4. Overall efficiency of the two-donor (2sgRNA-2ssODN) floxing method of generating the cKO alleles (XLSX 9 kb)
DOI: 10.25549/one-ouc17550197
title: Mattachine Society, correspondence, Albert J. de Dion (1959-1960)
DOI: 10.6084/m9.figshare.9730361.v1
title: Additional file 4: of Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation

description: Table S4. Overall efficiency of the two-donor (2sgRNA-2ssODN) floxing method of generating the cKO alleles (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9730364
title: Additional file 5: of Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation

description: Table S5. The details and the results of the 330 unique loci attempted for ssODNÂ knock-in projects (i.e. point mutation knock-in or short-tag insertion projects). (XLSX 14 kb)
DOI: 10.25549/one-ouc17550200
title: Mattachine Society, correspondence, Albert J. de Dion (1959-1960)
DOI: 10.6084/m9.figshare.9730364.v1
title: Additional file 5: of Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation

description: Table S5. The details and the results of the 330 unique loci attempted for ssODNÂ knock-in projects (i.e. point mutation knock-in or short-tag insertion projects). (XLSX 14 kb)
DOI: 10.6084/m9.figshare.21258939
title: Additional file 11 of Transcriptomic analysis of paternal behaviors in prairie voles

description: Additional file 11. Summary statistics for the differential expression analysis. DE: differentially expressed. LS: lateral septum, MPOA: medial preoptic area, NAc: nucleus accumbens.
DOI: 10.6084/m9.figshare.9730367
title: Additional file 6: of Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation

description: Table S6. The details and the results of alternate methods of floxing, tested on 18 loci. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.9730367.v1
title: Additional file 6: of Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation

description: Table S6. The details and the results of alternate methods of floxing, tested on 18 loci. (XLSX 23 kb)
DOI: 10.25549/one-ouc17554476
title: Mattachine Society, Police-Community Relations, San Francisco (1967)
DOI: 10.6084/m9.figshare.9730370
title: Additional file 7: of Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation

description: Table S7. The Evaluation of the modified method of two-donor floxing method (sequential delivery approach) reported in the Horii et al. 2017 report. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9730370.v1
title: Additional file 7: of Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation

description: Table S7. The Evaluation of the modified method of two-donor floxing method (sequential delivery approach) reported in the Horii et al. 2017 report. (XLSX 11 kb)
DOI: 10.25549/one-ouc17559719
title: Mattachine Society, secretary general file (1954-1960)

description: Mattachine Society; file of the secretary general of the Mattachine Society, including administrative records from area councils; correspondence regarding Mattachine publications and financial donations; meeting minutes; membership information; and legal documents  (1954-1960)
DOI: 10.25549/one-ouc17559720
title: Mattachine Society, Eastern Regional Homophile Conference (1967-1968)

description: Mattachine Society; reports and minutes from Eastern Regional Homophile conferences held in New York; includes resolutions on political issues and adoption of bylaws (1967-1968)
DOI: 10.25549/one-ouc17554474
title: Mattachine Society, Paul Coates incident (1953-1954)
DOI: 10.25549/one-ouc17554477
title: Mattachine Society, Paul Coates incident (1953-1954)
DOI: 10.25549/one-ouc17559724
title: Mattachine Society, secretary general file (1954-1960)

description: Mattachine Society; file of the secretary general of the Mattachine Society, including administrative records from area councils; correspondence regarding Mattachine publications and financial donations; meeting minutes; membership information; and legal documents  (1954-1960)
DOI: 10.25549/one-ouc17550201
title: Mattachine Society, statement of the chairman of Board of Directors (1954)
DOI: 10.25549/one-ouc17550203
title: Mattachine Society, correspondence, Albert J. de Dion (1959-1960)
DOI: 10.25549/one-ouc17554479
title: Mattachine Society, Police-Community Relations, San Francisco (1967)
DOI: 10.25549/one-ouc17550202
title: Mattachine Society, correspondence, Harold Call (1954-1959)

description: Mattachine Society, correspondence with Harold Call describing the activities of Mattachine Society chapters, membership, and the Mattachine Review; also includes a typescript of a presentation on "homosexuality in handwriting" (1954-1959)
DOI: 10.25549/one-ouc17554483
title: Mattachine Society, Paul Coates incident (1953-1954)
DOI: 10.25549/one-ouc17550204
title: Mattachine Society, correspondence, Curtis Dewees (1956-1963)
DOI: 10.25549/one-ouc17554482
title: Mattachine Society, Society for Individual Rights (1964-1967)
DOI: 10.25549/one-ouc17550205
title: Mattachine Society, correspondence, Albert J. de Dion (1959-1960)
DOI: 10.25549/one-ouc17550207
title: Mattachine Society, correspondence, Harold Call (1954-1959)

description: Mattachine Society, correspondence with Harold Call describing the activities of Mattachine Society chapters, membership, and the Mattachine Review; also includes a typescript of a presentation on "homosexuality in handwriting" (1954-1959)
DOI: 10.25549/one-ouc17550310
title: Mattachine Society, correspondence, Harold Call (1954-1959)

description: Mattachine Society, correspondence with Harold Call describing the activities of Mattachine Society chapters, membership, and the Mattachine Review; also includes a typescript of a presentation on "homosexuality in handwriting" (1954-1959)
DOI: 10.25549/one-ouc17556048
title: Mattachine Society, Long Beach (Harbor) Area Council correspondence and memoranda (1953-1956)
DOI: 10.25549/one-ouc17550206
title: Mattachine Society, statement of the chairman of Board of Directors (1954)
DOI: 10.25549/one-ouc17550309
title: Mattachine Society, correspondence, Harold Call (1954-1959)

description: Mattachine Society, correspondence with Harold Call describing the activities of Mattachine Society chapters, membership, and the Mattachine Review; also includes a typescript of a presentation on "homosexuality in handwriting" (1954-1959)
DOI: 10.25549/one-ouc17550208
title: Mattachine Society, correspondence, Curtis Dewees (1956-1963)
DOI: 10.25549/one-ouc17550332
title: Mattachine Society, correspondence, Roy F. Hooper (1958-1959)
DOI: 10.25549/one-ouc17550336
title: Mattachine Society, correspondence, Curtis Dewees (1956-1963)
DOI: 10.25549/one-ouc17550344
title: Mattachine Society, correspondence, Roy F. Hooper (1958-1959)
DOI: 10.25549/one-ouc17550348
title: Mattachine Society, correspondence, Donald Stewart Lucas (1956-1965)
DOI: 10.25549/one-ouc17550311
title: Mattachine Society, correspondence, Albert J. de Dion (1959-1960)
DOI: 10.25549/one-ouc17550312
title: Mattachine Society, correspondence, Harold Call (1954-1959)

description: Mattachine Society, correspondence with Harold Call describing the activities of Mattachine Society chapters, membership, and the Mattachine Review; also includes a typescript of a presentation on "homosexuality in handwriting" (1954-1959)
DOI: 10.25549/one-ouc17550320
title: Mattachine Society, correspondence, Albert J. de Dion (1959-1960)
DOI: 10.25549/one-ouc17559723
title: Mattachine Society, Los Angeles Area Council proposed bylaws and policies (1953-1954)

description: Mattachine Society; drafts for proposed bylaws and policies for the Los Angeles Area Council, also known as the Southern Area Council (1953-1954)
DOI: 10.25549/one-ouc17559722
title: Los Angeles Mattachine Society, Inc., administrative records and promotional materials (1952-1964)

description: Los Angeles Mattachine Society, Inc.; bulletins, promotional materials, and administrative records, including the 1963 articles of incorporation; also includes photocopies of a notebook with notes documenting 1952 meetings of the Mattachine Society, also known as the Mattachine Foundation (1952-1964)
DOI: 10.25549/one-ouc17559725
title: Mattachine Society, Los Angeles Area Council proposed bylaws and policies (1953-1954)

description: Mattachine Society; drafts for proposed bylaws and policies for the Los Angeles Area Council, also known as the Southern Area Council (1953-1954)