cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.t80fp
title: Data from: Experimental evidence that evolutionarily diverse assemblages result in higher productivity

description: There is now ample experimental evidence that speciose assemblages are
 more productive and provide a greater amount of ecosystem services than
 depauperate ones. However, these experiments often conclude that there is
 a higher probability of including complementary species combinations in
 assemblages with more species, and lack a priori prediction about which
 species combinations maximize function. Here I report the results of the
 first experiment that manipulates the evolutionary relatedness of
 constituent plant species across a richness gradient. I show that
 assemblages with distantly related species contributed most to the higher
 biomass production in multispecies assemblages, through species
 complementarity. Species produced more biomass than predicted from their
 monocultures when they were in plots with distantly related species, and
 produced the amount of biomass predicted from monoculture when sown with
 close relatives. This suggests that, in the absence of any other
 information, combining distantly related species in restored or managed
 landscapes can serve to maximize biomass production and carbon
 sequestration, thus merging calls to conserve evolutionary history and
 maximize ecosystem function.
description: BIOMASSMeasured biomass from experimental plots.plantedSuccessfully planted species in each plotSpp_codesSpecies namesEXP1_MLtree_codesPhylogenetic treeanal_datdata for analysis, including diversity metrics
DOI: 10.5061/dryad.sb7nb51
title: Data from: Abnormal CSF amyloid-β42 and tau levels in hip fracture patients without dementia

description: Background: There is strong association of Alzheimer's disease (AD)
 pathology with gait disorder and falls in older adults without dementia.
 The goal of the study was to examine the prevalence and severity of AD
 pathology in older adults without dementia who fall and sustain hip
 fracture. Methods: Cerebrospinal fluid (CSF) was obtained from 168 hip
 fracture patients. CSF Aβ42/40 ratio, p-tau, and t-tau measures were
 dichotomized into normal vs. abnormal, and categorized according to the
 A/T/N classification. Results: Among the hip fracture patients, 88.6% of
 the cognitively normal (Clinical Dementia Rating-CDR 0; n=70) and 98.8%
 with mild cognitive impairment (CDR 0.5; n=81) fell in the abnormal
 biomarker categories by the A/T/N classification. Conclusions: A large
 proportion of older hip fracture patients have CSF evidence of AD
 pathology. Preoperative determination of AD biomarkers may play a crucial
 role in identifying persons without dementia who have underlying AD
 pathology in perioperative settings.
description: EOH PLOS One CSF
 Biomarkers in Hip Fracture PatientsCSF AD biomarkers in hip
 fracture patientsEOH PLOS One Submission
 2018_08_24.xlsx
DOI: 10.5061/dryad.p23f0
title: Data from: Gauging the purported costs of public data archiving for long-term population studies

description: It was recently proposed that long-term population studies be exempted
 from the expectation that authors publicly archive the primary data
 underlying published articles. Such studies are valuable to many areas of
 ecological and evolutionary biological research, and multiple risks to
 their viability were anticipated as a result of public data archiving
 (PDA), ultimately all stemming from independent reuse of archived data.
 However, empirical assessment was missing, making it difficult to
 determine whether such fears are realistic. I addressed this by surveying
 data packages from long-term population studies archived in the Dryad
 Digital Repository. I found no evidence that PDA results in reuse of data
 by independent parties, suggesting the purported costs of PDA for
 long-term population studies have been overstated.
description: Table 1. Details of the
 72 data packages (and their associated articles) included in the
 survey.Table
 1.csvTable 2. The number of
 data packages archived in the Dryad Digital Repository each year from 2000
 to 2015 for four leading journals within ecology and evolutionary biology
 (The American Naturalist, Proceedings of the Royal Society B: Biological
 Sciences, Evolution, and Journal of Evolutionary
 Biology).Table
 2.csv
DOI: 10.5061/dryad.dh03r
title: Data from: Discrete pattern of burst stimulation in the ventrobasal thalamus for anti-nociception

description: The thalamus has been proposed to play a role in sensory modulation via
 switching between tonic and burst dual firing of individual neurons. Of
 the two firing modes, altered burst firing has been repeatedly implicated
 with pathological pain conditions, which suggests that maintaining a
 certain form of thalamic burst could be crucial for controlling pain.
 However, specific elements of burst firing that may contribute to pain
 control have not yet been actively investigated. Utilizing the deep brain
 stimulation (DBS) technique, we explored the effects of bursting
 properties in pain control by electrically stimulating the ventrobasal
 (VB) thalamus in forms of burst patterned to test different aspects of
 bursts during the formalin induced nociception in mice. Our results
 demonstrated that electrical stimulations mimicking specific burst firing
 properties are important in producing an anti-nociceptive effect and found
 that the ≤3 ms interval between burst pluses (intra-burst-interval:
 IntraBI) and ≥3 pulses per burst were required to reliably reduce formalin
 induced nociceptive responses in mice. Periodicity of IntraBI was also
 suggested to contribute to anti-nociception to a limited extent.
description: B6x129(F1) stimulation
 formalin testBehavioral response
 analzed in 5 min segments to different type of stimulation (or
 no-stimulation) conditions. Details on the stimulation location and the
 stimulation protocol are described in the paper.
DOI: 10.5061/dryad.1683s
title: Data from: Genetic and phenotypic divergence between low- and high-altitude populations of two recently diverged cinnamon teal subspecies

description: Spatial variation in the environment can lead to divergent selection
 between populations occupying different parts of a species’ range, and
 ultimately lead to population divergence. The colonization of new areas
 can thus facilitate divergence in beneficial traits, yet with little
 differentiation at neutral genetic markers. We investigated genetic and
 phenotypic patterns of divergence between low- and high-altitude
 populations of cinnamon teal inhabiting normoxic and hypoxic regions in
 the Andes and adjacent lowlands of South America. Cinnamon Teal showed
 strong divergence in body size (PC1; PST = 0.56) and exhibited significant
 frequency differences in a single non-synonymous α-hemoglobin amino acid
 polymorphism (Asn/Ser-α9; FST = 0.60) between environmental extremes,
 despite considerable admixture of mtDNA and intron loci (FST =
 0.004–0.168). Inferences of strong population segregation were further
 supported by the observation of few mismatched individuals in either
 environmental extreme. Coalescent analyses indicated that the highlands
 were most likely colonized from lowland regions but following divergence,
 gene flow has been asymmetric from the highlands into the lowlands.
 Multiple selection pressures associated with high altitude habitats,
 including cold and hypoxia, have likely shaped morphological and genetic
 divergence within South American cinnamon teal populations.
description: wilson et
 al_12-0024Body size measurements
 of South American Cinnamon Teal (Anas cyanoptera) taken from recently
 collected individuals before museum skin preparation (Table 1) and from
 museum specimens (Table 2).
DOI: 10.5061/dryad.65079
title: Data from: Single and multiple mating reduces longevity of female dumpling squid (Euprymna tasmanica)

description: For many species, mating is a necessary yet costly activity. The costs
 involved can have an important influence on the evolution of life
 histories and senescence. Females of many species mate multiply and this
 behaviour can inflict a longevity cost. Most studies investigating the
 effects of multiple mating on female survival have been conducted on
 insects and the effects in other taxa are largely unknown. We investigate
 the effects of both a single mating and a second mating on longevity in
 female dumpling squid (Euprymna tasmanica), a species in which both sexes
 mate multiply. Through comparing the longevity of virgin, once-mated and
 twice-mated females, we found that a single mating reduced female lifespan
 by 15 days on average. A second mating resulted in an additional 8 day (on
 average) longevity cost, despite no difference in total clutch mass,
 number of clutches, single egg mass or number of eggs per clutch between
 once-mated and twice-mated females. This demonstrates a cost to multiple
 mating which may be independent of the cost of egg production.
 Furthermore, total clutch mass and female lifespan were positively
 correlated, whilst female lifespan decreased with increasing average water
 temperature. The presence of an additive effect of reproduction on
 longevity suggests that multiple mating in cephalopods may have benefits
 that outweigh these costs, or that there is a conflict in optimal mating
 frequency between males and females.
description: FranklinStuartFox_JEB2017_datasetExcel file of data from female squid longevity experiment
DOI: 10.5281/zenodo.17971617
title: SHM_121956_HST_3D

description: 3D photogrammetric model of a ceramic jug from the Middle Ages, collected in the field at Slottsfjärden in Kalmar and held in the collections of the National Historical Museums in Stockholm.

Link to the Dynamic Collection platform  

https://dyncolldev.ht.lu.se/plus/artifact_view.php?item=666

Link to Sök I Samlingarna  

https://samlingar.shm.se/object/22F32CE9-4FC7-4BEE-BDF4-89800364BAF4
DOI: 10.5281/zenodo.17971618
title: SHM_121956_HST_3D

description: 3D photogrammetric model of a ceramic jug from the Middle Ages, collected in the field at Slottsfjärden in Kalmar and held in the collections of the National Historical Museums in Stockholm.

Link to the Dynamic Collection platform  

https://dyncolldev.ht.lu.se/plus/artifact_view.php?item=666

Link to Sök I Samlingarna  

https://samlingar.shm.se/object/22F32CE9-4FC7-4BEE-BDF4-89800364BAF4
DOI: 10.5061/dryad.q10d6
title: Data from: Evolutionary constraints and the maintenance of individual specialization throughout succession

description: Constraints on life-history traits, with their close links to fitness, are
 widely invoked as limits to niche expansion at most organizational levels.
 Theoretically, such constraints can maintain individual specialization by
 preventing adaptation to all niches available, but empirical evidence of
 them remains elusive for natural populations. This problem may be
 compounded by a tendency to seek constraints involving multiple traits,
 neglecting their added potential to manifest in trait expression across
 environments (i.e., within reaction norms). By replicating genotypes of a
 colonial marine invertebrate across successional stages in its local
 community, and taking a holistic approach to the analysis of ensuing
 reaction norms for fitness, we show the potential for individual
 specialization to be maintained by genetic constraints associated with
 these norms, which limit the potential for fitness at one successional
 stage to improve without loss of fitness at others. Our study provides new
 insight into the evolutionary maintenance of individual specialization in
 natural populations and reinforces the importance of reaction norms for
 studying this phenomenon.
description: Data from
 publicationAs described in
 publicationdryad.xlsx
DOI: 10.5061/dryad.g0q0q
title: Data from: Differential effects of food availability on minimum and maximum rates of metabolism

description: Metabolic rates reflect the energetic cost of living but exhibit
 remarkable variation among conspecifics, partly as a result of the
 constraints imposed by environmental conditions. Metabolic rates are
 sensitive to changes in temperature and oxygen availability, but effects
 of food availability, particularly on maximum metabolic rates, are not
 well understood. Here, we show in brown trout (Salmo trutta) that maximum
 metabolic rates are immutable but minimum metabolic rates increase as a
 positive function of food availability. As a result, aerobic scope (i.e.
 the capacity to elevate metabolism above baseline requirements) declines
 as food availability increases. These differential changes in metabolic
 rates likely have important consequences for how organisms partition
 available metabolic power to different functions under the constraints
 imposed by food availability.
description: Auer et al SMR and MMR
 dataData on metabolic rates
 in brown trout (Salmo trutta)
DOI: 10.15468/dl.wg8h2b
title: Occurrence Download

description: A dataset containing 30539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Psittacula krameri",
 "Country is Germany",
 "BasisOfRecord is one of (Human Observation, Observation)"
 ]
}

 The dataset includes 30539 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001294-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.g51kg15
title: Data from: Capturing genetic variation in crop wild relatives: an evolutionary approach

description: Crop wild relatives (CWRs) offer novel genetic resources for crop
 improvement. To assist in the urgent need to collect and conserve CWR
 germplasm, we advance here the concept of an ‘evolutionary’ approach.
 Central to this approach is the predictive use of spatial proxies of
 evolutionary processes (natural selection, gene flow, and genetic drift)
 to locate and capture genetic variation. As a means to help validate this
 concept, we screened wild-collected genotypes of woodland strawberry
 (Fragaria vesca) in a common garden. A quantitative genetics approach was
 then used to test the ability of two such proxies – mesoclimatic variation
 (a proxy of natural selection) and landscape isolation and geographic
 distance between populations (proxies of gene flow potential) – to predict
 spatial genetic variation in three quantitative traits (plant size, early
 season flower number, and flower frost tolerance). Our results indicated a
 significant but variable effect of mesoclimatic conditions in structuring
 genetic variation in the wild, in addition to other undetermined regional
 scale processes. As a proxy of gene flow potential, landscape isolation
 was also a likely determinant of observed patterns – as opposed to and
 regardless of geographic distance between populations. We conclude that
 harnessing proxies of adaptive and non-adaptive evolutionary processes
 could provide a robust and valuable means to identify genetic variation in
 CWRs. We thus advocate wider use of this approach amongst researchers,
 breeders, and practitioners, to expedite the capture and in situ
 conservation of genetic resources provided by crop wild relatives.
description: Dataset_climate_environmental_&_trait_genetic_values_(BLUPs)Data for 82 Fragaria vesca genotypes on: collection locality coordinates, locality climate, landscape characteristics, and genetic values (BLUPs) for three quantitative traits (plant size, early season flower number, and flower frost tolerance).Dataset_raw_phenotypic_valuesCommon garden block replication (325 individuals, across 82 Fragaria vesca genotypes), and raw phenotypic data collected for quantification of three traits (plant size, early season flower number, and flower frost tolerance).
DOI: 10.5061/dryad.3sp331p
title: Data from: Fire legacies in eastern ponderosa pine forests

description: 1. Disturbance legacies in structures communities and ecological memory,
 but due to increasing changes in disturbance regimes, it is becoming more
 difficult to characterize disturbance legacies or determine how long they
 persist. 2. We sought to quantify the characteristics and persistence of
 material legacies (e.g., biotic residuals of disturbance) that arise from
 variation in fire severity in an eastern ponderosa pine forest in North
 America. We compared forest stand structure and understory woody plant and
 bird community composition and species richness across unburned, low-,
 moderate-, and high-severity burn patches in a 27-year-old mixed-severity
 wildfire that had received minimal post-fire management. 3. We identified
 distinct tree densities (high: 14.3 ± 7.4 trees per ha, moderate: 22.3 ±
 12.6, low: 135.3 ± 57.1, unburned: 907.9 ± 246.2) and coarse woody debris
 cover (high: 8.5 ± 1.6 % cover per 30 m transect, moderate: 4.3 ± 0.7,
 low: 2.3 ± 0.6, unburned: 1.0 ± 0.4) among burn severities. 4. Understory
 woody plant communities differed between high severity patches, moderate-
 and low- severity patches, and unburned patches (all P &lt; 0.05).
 Bird communities differed between high- and moderate- severity patches,
 low-severity patches, and unburned patches (all P &lt; 0.05). Bird
 species richness varied across burn severities: low-severity patches had
 the highest (5.29 ± 1.44) and high-severity patches had the lowest (2.87 ±
 0.72). Understory woody plant richness was highest in unburned (5.93 ±
 1.10) and high severity (5.07 ± 1.17) patches, and it was lower in
 moderate (3.43 ± 1.17) and low severity (3.43 ± 1.06) patches. 5. We show
 material fire legacies persisted decades after the mixed-severity wildfire
 in eastern ponderosa forest, fostering distinct structures, communities,
 and species in burned versus unburned patches and across fire severities.
 At a patch scale, eastern and western ponderosa system responses to
 mixed-severity fires were consistent.
description: Forest stand structure
 and biotic community data from Fort Robinson State Park, Nebraska,
 USAData includes coarse
 woody debris percent coverage, tree density, bird community composition,
 and understory woody plant community composition/cover taken in 2016 at
 Fort Robinson State Park, Nebraska, USA. Sampling location coordinates
 (latitude, longitude) are also included. Sampling locations were
 distributed in a stratified-random design according to burn severity
 classes from a wildfire that occurred in 1989.FireLegaciesInEasternPonderosaPine_RobertsCP.zip
DOI: 10.5061/dryad.qm009
title: Data from: Stress for invasion success? Temperature stress of preceding generations modifies the response to insecticide stress in an invasive pest insect

description: Adaptation to stressful environments is one important factor influencing
 species invasion success. Tolerance to one stress may be complicated by
 exposure to other stressors experienced by the preceding generations. We
 studied whether parental temperature stress affects tolerance to
 insecticide in the invasive Colorado potato beetle Leptinotarsa
 decemlineata. Field-collected pyrethroid-resistant beetles were reared
 under either stressful (17°C) or favourable (23°C) insecticide-free
 environments for three generations. Then, larvae were exposed to
 pyrethroid insecticides in common garden conditions (23°C). Beetles were
 in general tolerant to stress. The parental temperature stress alone
 affected beetles positively (increased adult weight) but it impaired their
 tolerance to insecticide exposure. In contrast, offspring from the
 favourable temperature regime showed compensatory weight gain in response
 to insecticide exposure. Our study emphasizes the potential of
 cross-generational effects modifying species stress tolerance. When
 resistant pest populations invade benign environments, a re-application of
 insecticides may enhance their performance via hormetic effects. In turn,
 opposite effects may arise if parental generations have been exposed to
 temperature stress. Thus, the outcome of management practices of invasive
 pest species are difficult to predict unless we also incorporate knowledge
 of the evolutionary and recent (preceding generations) stress history of
 the given populations into pest management.
description: Piiroinen_etal_Stress_for_Invasion_SuccessText file, columns separated with commas. Data from the experiment to investigate separate and combined effects of insecticide stress and thermal stress history on life-history traits in the invasive Colorado potato beetle.
DOI: 10.5061/dryad.1451
title: Data from: Parental care trade-offs and life history relationships in insects

description: Insect parental care is extensive and varied, but its life history
 implications have never been comparatively tested. Using original and
 literature data, we tested predictions about egg size, egg number
 (lifetime fecundity) and body size, under different parental care modes
 across a phylogeny of 275 insect species. Life history theory and both
 comparative and intraspecific evidence from ectotherms suggest parental
 care should select for bigger, fewer eggs, but that allometric scaling of
 egg size and lifetime fecundity may depend on whether care consists of
 provisioning (density-dependent offspring survival) or merely guarding
 (density-independent offspring survival). Against expectation, egg size
 was indistinguishable among parental care modes, covarying only with body
 size. This refutes most theory of egg size evolution under parental care.
 Lifetime fecundity scaled differently depending on parental investment -
 positively under no care and guarding as in most ectotherms, but
 negatively under provisioning. Reproductive allocation in provisioning
 insects resembled mammals and birds, also groups with obligate
 provisioning. We propose that the metabolic demands of multiple offspring
 must scale with species body size more steeply than the parent's
 provisioning capacity, resulting in larger females laying fewer eggs.
 These patterns lay the groundwork for a more general understanding of
 parental care and life history.
description: tableS3.csvData table for 287 species included in this study. Asterisk indicates missing data. Dry weight is given in mg; egg volume is given in mm3. Parental care by the ovipositing female is coded as "No care" (abandonment after oviposition), "Guarding" (post-oviposition guarding of eggs or young) or "Provisioning" (pre- or post-oviposition supplying of food).
DOI: 10.5061/dryad.ft5v0
title: Data from: Alternative paths to success in a parasite community: within-host competition can favor higher virulence or direct interference

description: Selection imposed by coinfection may vary with the mechanism of
 within-host competition between parasites. Exploitative competition is
 predicted to favor more virulent parasites, while interference competition
 may result in lower virulence. Here, we examine whether exploitative or
 interference competition determines the outcome of competition between two
 nematode species (Steinernema spp.), which in combination with their
 bacterial symbionts (Xenorhabdus spp.), infect and kill insect hosts.
 Multiple isolates of each nematode species, carrying their naturally
 associated bacteria, were characterized by (1) the rate at which they
 killed insect hosts, and by (2) the ability of their bacteria to interfere
 with each other’s growth via bacteriocidal toxins called
 "bacteriocins." We found that both exploitative and interference
 abilities were important in predicting which species had a selective
 advantage in pairwise competition experiments. When nematodes carried
 bacteria that did not interact via bacteriocins, the faster killing
 isolate had a competitive advantage. Alternatively, nematodes could gain a
 competitive advantage when they carried bacteria able to inhibit the
 bacteria of their competitor. Thus, the combination of nematode/bacterial
 traits that led to competitive success depended on which isolates were
 paired, suggesting that variation in competitive interactions may be
 important for maintaining species diversity in this community.
description: sumData for Figure
 3kopvbovData for Figure 2 and first paragraph of the Results.