cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.839078
title: Vertical profiles of environmental parameters measured on discrete water samples collected with Niskin bottles at station TARA_078 during the Tara Oceans expedition 2009-2013

description: The Tara Oceans Expedition (2009-2013) was a global survey of ocean ecosystems aboard the Sailing Vessel Tara. It carried out extensive measurements of evironmental conditions and collected plankton (viruses, bacteria, protists and metazoans) for later analysis using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set includes properties of seawater, particulate matter and dissolved matter that were measured from discrete water samples collected with Niskin bottles during the 2009-2013 Tara Oceans expedition. Properties include pigment concentrations from HPLC analysis (10 depths per vertical profile, 25 pigments per depth), the carbonate system (Surface and 400m; pH (total scale), CO2, pCO2, fCO2, HCO3, CO3, Total alkalinity, Total carbon, OmegaAragonite, OmegaCalcite, and dosage Flags), nutrients (10 depths per vertical profile; NO2, PO4, N02/NO3, SI, quality Flags), DOC, CDOM, and dissolved oxygen isotopes. The Service National d'Analyse des Paramètres Océaniques du CO2, at the Université Pierre et Marie Curie, determined CT and AT potentiometrically. More than 200 vertical profiles of these properties were made across the world ocean. DOC, CDOM and dissolved oxygen isotopes are available only for the Arctic Ocean and Arctic Seas (2013).
description: marc.picheral@obs-vlfr.fr&gt;2014-10-03T13:23:32&gt;D:\process_ctd_data\Tara_validated_CTD_data_20121011\Tara_Oceans_Data_RVSS-NISKIN_2009-2013_20141003&gt;
DOI: 10.1594/pangaea.779832
title: North Atlantic surface seawater pH values measured on board of the Pourquoi-Pas? during the BoBECO Cruise (September -October 2011)
DOI: 10.1594/pangaea.926819
title: Seawater carbonate chemistry and metabolic rates, bloodbased metrics in newborn blacktip reef sharks

description: Anthropogenic ocean acidification (OA) is a threat to coral reef fishes, but few studies have investigated responses of high-trophic-level predators, including sharks. We tested the effects of 72-hr exposure to OA-relevant elevated partial pressures of carbon dioxide (pCO2) on oxygen uptake rates, acid–base status, and haematology of newborn tropical blacktip reef sharks (Carcharhinus melanopterus). Acute exposure to end-of-century pCO2 levels resulted in elevated haematocrit (i.e. stress or compensation of oxygen uptake rates) and blood lactate concentrations (i.e. prolonged recovery) in the newborns. Conversely, whole blood and mean corpuscular haemoglobin concentrations, blood pH, estimates of standard and maximum metabolic rates, and aerobic scope remained unaffected. Taken together, newborn blacktip reef sharks appear physiologically robust to end-of-century pCO2 levels, but less so than other, previously investigated, tropical carpet sharks. Our results suggest peak fluctuating pCO2 levels in coral reef lagoons could still physiologically affect newborn reef sharks, but studies assessing the effects of long-term exposure and in combination with other anthropogenic stressors are needed.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2020) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-12-25.
DOI: 10.1594/pangaea.926944
title: Seawater carbonate chemistry and growth rate, larval attachment of edible oyster Crassostrea hongkongensis

description: Unprecedented rate of increased CO2 level in the ocean and the subsequent changes in carbonate system including decreased pH, known as ocean acidification (OA), is predicted to disrupt not only the calcification process but also several other physiological and developmental processes in a variety of marine organisms, including edible oysters. Nonetheless, not all species are vulnerable to those OA threats, e.g. some species may be able to cope with OA stress using environmentally induced modifications on gene and protein expressions. For example, external environmental stressors including OA can influence the addition and removal of methyl groups through epigenetic modification (e.g. DNA methylation) process to turn gene expression “on or off” as part of a rapid adaptive mechanism to cope with OA. In this study, we tested the above hypothesis through testing the effect of OA, using decreased pH 7.4 as proxy, on DNA methylation pattern of an endemic and a commercially important estuary oyster species, Crassostrea hongkongensis at the time of larval habitat selection and metamorphosis. Larval growth rate did not differ between control pH 8.1 and treatment pH 7.4. The metamorphosis rate of the pediveliger larvae was higher at pH 7.4 than those in control pH 8.1, however over one-third of the larvae raised at pH 7.4 failed to attach on optimal substrate as defined by biofilm presence. During larval development, a total of 130 genes were differentially methylated across the two treatments. The differential methylation in the larval genes may have partially accounted for the higher metamorphosis success rate under decreased pH 7.4 but with poor substratum selection ability. Differentially methylated loci were concentrated in the exon regions and appear to be associated with cytoskeletal and signal transduction, oxidative stress, metabolic processes, and larval metamorphosis, which implies the high potential of C. hongkongensis larvae to acclimate and adapt through non-genetic ways to OA threats within a single generation.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2020) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-01-25.
DOI: 10.1594/pangaea.839337
title: Vertical profiles of environmental parameters measured on discrete water samples collected with Niskin bottles at station TARA_205 during the Tara Oceans expedition 2009-2013

description: The Tara Oceans Expedition (2009-2013) was a global survey of ocean ecosystems aboard the Sailing Vessel Tara. It carried out extensive measurements of evironmental conditions and collected plankton (viruses, bacteria, protists and metazoans) for later analysis using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set includes properties of seawater, particulate matter and dissolved matter that were measured from discrete water samples collected with Niskin bottles during the 2009-2013 Tara Oceans expedition. Properties include pigment concentrations from HPLC analysis (10 depths per vertical profile, 25 pigments per depth), the carbonate system (Surface and 400m; pH (total scale), CO2, pCO2, fCO2, HCO3, CO3, Total alkalinity, Total carbon, OmegaAragonite, OmegaCalcite, and dosage Flags), nutrients (10 depths per vertical profile; NO2, PO4, N02/NO3, SI, quality Flags), DOC, CDOM, and dissolved oxygen isotopes. The Service National d'Analyse des Paramètres Océaniques du CO2, at the Université Pierre et Marie Curie, determined CT and AT potentiometrically. More than 200 vertical profiles of these properties were made across the world ocean. DOC, CDOM and dissolved oxygen isotopes are available only for the Arctic Ocean and Arctic Seas (2013).
description: marc.picheral@obs-vlfr.fr&gt;2014-10-03T13:23:32&gt;D:\process_ctd_data\Tara_validated_CTD_data_20121011\Tara_Oceans_Data_RVSS-NISKIN_2009-2013_20141003&gt;
DOI: 10.1594/pangaea.926679
title: Seawater carbonate chemistry and carbonate load of seagrass leaves

description: Seagrass meadows play a significant role in the formation of carbonate sediments, serving as a substrate for carbonate-producing epiphyte communities. The magnitude of the epiphyte load depends on plant structural and physiological parameters, related to the time available for epiphyte colonization. Yet, the carbonate accumulation is likely to also depend on the carbonate saturation state of seawater (Omega) that tends to decrease as latitude increases due to decreasing temperature and salinity. A decrease in carbonate accumulation with increasing latitude has already been demonstrated for other carbonate producing communities. The aim of this study was to assess whether there was any correlation between latitude and the epiphyte carbonate load and net carbonate production rate on seagrass leaves. Shoots from 8 different meadows of the Zostera genus distributed across a broad latitudinal range (27 °S to up to 64 °N) were sampled along with measurements of temperature and Omega. The Omega within meadows significantly decreased as latitude increased and temperature decreased. The mean carbonate content and load on seagrass leaves ranged from 17 % DW to 36 % DW and 0.4-2.3 mg CO3/cm**2, respectively, and the associated mean carbonate net production rate varied from 0.007 to 0.9 mg CO3/cm**2/d. Mean carbonate load and net production rates decreased from subtropical and tropical, warmer regions towards subpolar latitudes, consistent with the decrease in Omega. These results point to a latitudinal variation in the contribution of seagrass to the accumulation of carbonates in their sediments which affect important processes occurring in seagrass meadows, such as nutrient cycling, carbon sequestration and sediment accretion.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2020) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-12-25.
DOI: 10.1594/pangaea.927166
title: Seawater carbonate chemistry and herbivory rates of Lacuna vincta grazing on Ulva rigida

description: Acidification and deoxygenation are two consequences of climate change that also co-occur in eutrophied coastal zones and can have deleterious effects on marine life. While the effects of hypoxia on marine herbivores have been well-studied, how ocean acidification combined with hypoxia affects herbivory is poorly understood. This study examined how herbivory and survival by the gastropod Lacuna vincta grazing on the macroalgae Ulva rigida was influenced by hypoxia and ocean acidification, alone and in combination, with and without food limitation. Experiments exposed L. vincta to a range of environmentally realistic dissolved oxygen (0.7-8 mg/L) and pH (7.3-8.0 total scale) conditions for 3-72 h, with and without a starvation period and quantified herbivory and survival. While acidified conditions (pH &lt; 7.4) reduced herbivory when combined with food limitation, low oxygen conditions (&lt; 4 mg/L) reduced herbivory and survival regardless of food supply. When L. vincta were starved and grazed in acidified conditions herbivory was additively reduced, whereas starvation and hypoxia synergistically reduced grazing rates. Overall, low oxygen had a more inhibitory effect on herbivory than low pH. Shorter exposure times (9, 6, and 3 h) were required to reduce grazing at lower DO levels (∼2.4, ∼1.6, and ∼0.7 mg/L, respectively). Herbivory ceased entirely following a three-hour exposure to DO of 0.7 mg/L suggesting that episodes of diurnal hypoxia disrupt grazing by these gastropods. The suppression of herbivory in response to acidified and hypoxic conditions could create a positive feedback loop that promotes 'green tides' whereby reduced grazing facilitates the overgrowth of macroalgae that cause nocturnal acidification and hypoxia, further disrupting herbivory and promoting the growth of macroalgae. Such feedback loops could have broad implications for estuarine ecosystems where L. vincta is a dominant macroalgal grazer and will intensify as climate change accelerates.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2020) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-01-25.
DOI: 10.1594/pangaea.927308
title: Seawater carbonate chemistry and UVR-induced inhibition of photosynthetic light reactions and growth in an intertidal red macroalga

description: The commercially important red macroalga Pyropia (formerly Porphyra) yezoensis is, in its natural intertidal environment, subjected to high levels of both photosynthetically active and ultraviolet radiation (PAR and UVR, respectively). In the present work, we investigated the effects of a plausibly increased global CO2 concentration on quantum yields of photosystems II (PSII) and I (PSI), as well as photosynthetic and growth rates of P. yezoensis grown under natural solar irradiance regimes with or without the presence of UV-A and/or UV-B. Our results showed that the high-CO2 treatment (1000 μbar, which also caused a drop of 0.3 pH units in the seawater) significantly increased both CO2 assimilation rates (by 35%) and growth (by 18%), as compared with ambient air of 400 μbar CO2. The inhibition of growth by UV-A (by 26%) was reduced to 15% by high-CO2 concentration, while the inhibition by UV-B remained at ~6% under both CO2 concentrations. Homologous results were also found for the maximal relative photosynthetic electron transport rates (rETRmax), the maximum quantum yield of PSII (Fv/Fm), as well as the midday decrease in effective quantum yield of PSII (YII) and concomitant increased non-photochemical quenching (NPQ). A two-way ANOVA analysis showed an interaction between CO2 concentration and irradiance quality, reflecting that UVR-induced inhibition of both growth and YII were alleviated under the high-CO2 treatment. Contrary to PSII, the effective quantum yield of PSI (YI) showed higher values under high-CO2 condition, and was not significantly affected by the presence of UVR, indicating that it was well protected from this radiation. Both the elevated CO2 concentration and presence of UVR significantly induced UV-absorbing compounds. These results suggest that future increasing CO2 conditions will be beneficial for photosynthesis and growth of P. yezoensis even if UVR should remain at high levels.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2020) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-01-25.
DOI: 10.1594/pangaea.933802
title: Seawater carbonate chemistry and maximum quantum yield and relative electron transfer rate of microalgal communities in Antarctic pack ice

description: Increased anthropogenic CO2 emissions are causing changes to oceanic pH and CO2 concentrations that will impact many marine organisms, including microalgae. Phytoplankton taxa have shown mixed responses to these changes with some doing well while others have been adversely affected. Here, the photosynthetic response of sea-ice algal communities from Antarctic pack ice (brine and infiltration microbial communities) to a range of CO2 concentrations (400 ppm to 11,000 ppm in brine algae experiments, 400 ppm to 20,000 ppm in the infiltration ice algae experiment) was investigated. Incubations were conducted as part of the Sea-Ice Physics and Ecosystem Experiment II (SIPEX-2) voyage, in the austral spring (September–November), 2012. In the brine incubations, maximum quantum yield (Fv/Fm) and relative electron transfer rate (rETRmax) were highest at ambient and 0.049% (experiment 1) and 0.19% (experiment 2) CO2 concentrations, although, Fv/Fm was consistently between 0.53±0.10–0.68±0.01 across all treatments in both experiments. Highest rETRmax was exhibited by brine cultures exposed to ambient CO2 concentrations (60.15).In a third experiment infiltration ice algal communities were allowed to melt into seawater modified to simulate the changed pH and CO2 concentrations of future springtime ice-edge conditions. Ambient and 0.1% CO2 treatments had the highest growth rates and Fv/Fm values but only the highest CO2 concentration produced a significantly lower rETRmax.These experiments, conducted on natural Antarctic sea-ice algal communities, indicate a strong level of tolerance to elevated CO2 concentrations and suggest that these communities might not be adversely affected by predicted changes in CO2 concentration over the next century.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-07-15.
DOI: 10.1594/pangaea.933390
title: Seawater carbonate chemistry and Carbon content, swimming activity (Hz) and mortality of Aurelia aurita ephyrae

description: Global change is affecting marine ecosystems through a combination of different stressors such as warming, ocean acidification and oxygen depletion. Very little is known about the interactions among these factors, especially with respect to gelatinous zooplankton. Therefore, in this study we investigated the direct effects of pH, temperature and oxygen availability on the moon jellyfish Aurelia aurita, concentrating on the ephyral life stage. Starved one-day-old ephyrae were exposed to a range of pCO2 (400–4000 ppm) and three different dissolved oxygen levels (from saturated to hypoxic conditions), in two different temperatures (5 and 15 °C) for 7 days. Carbon content and swimming activity were analysed at the end of the incubation period, and mortality noted. General linearized models were fitted through the data, with the best fitting models including two- and three-way interactions between pCO2, temperature and oxygen concentration. The combined effect of the stressors was small but significant, with the clearest negative effect on growth caused by the combination of all three stressors present (high temperature, high CO2, low oxygen). We conclude that A. aurita ephyrae are robust and that they are not likely to suffer from these environmental stressors in a near future.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-07-06.
DOI: 10.1594/pangaea.778454
title: Seawater carbonate chemistry and DNA, RNA, proteins and mass of Gadus morhua during experiments (Experiment 5), 2012

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
DOI: 10.1594/pangaea.778455
title: Seawater carbonate chemistry and Gadus morhua otholith diameter, radius, area and circumference during experiments (Experiment 5), 2012

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
DOI: 10.1594/pangaea.777447
title: Seawater carbonate chemistry and fish Amphiprion percula behaviour during experiments, 2012

description: Predicted future CO2 levels have been found to alter sensory responses and behaviour of marine fishes. Changes include increased boldness and activity, loss of behavioural lateralization, altered auditory preferences and impaired olfactory function. Impaired olfactory function makes larval fish attracted to odours they normally avoid, including ones from predators and unfavourable habitats. These behavioural alterations have significant effects on mortality that may have far-reaching implications for population replenishment, community structure and ecosystem function. However, the underlying mechanism linking high CO2 to these diverse responses has been unknown. Here we show that abnormal olfactory preferences and loss of behavioural lateralization exhibited by two species of larval coral reef fish exposed to high CO2 can be rapidly and effectively reversed by treatment with an antagonist of the GABA-A receptor. GABA-A is a major neurotransmitter receptor in the vertebrate brain. Thus, our results indicate that high CO2 interferes with neurotransmitter function, a hitherto unrecognized threat to marine populations and ecosystems. Given the ubiquity and conserved function of GABA-A receptors, we predict that rising CO2 levels could cause sensory and behavioural impairment in a wide range of marine species, especially those that tightly control their acid-base balance through regulatory changes in HCO3 and Cl levels.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
description: Supplement to: Nilsson, Göran E; Dixson, Danielle L; Domenici, Paolo; McCormick, Mark I; Sorensen, Christina; Watson, Sue-Ann; Munday, Philip L (2012): Near-future carbon dioxide levels alter fish behaviour by interfering with neurotransmitter function. Nature Climate Change, 2, 201-204