cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14653154
title: Drug-Induced TdP Risk Assessment

description: A manually collected dataset that investigates the proarrhythmic risk of 109 drugs using parameters obtained from biophysical models. The dataset provides 4 torsade de pointes (TdP) risk categories.  For all 109 drugs, IC50 values and Hill coefficients (h) for INa, INaL, IKr, Ito, ICaL, IK1, and IKs and human effective free therapeutic plasma concentration (EFTPC) were obtained (Llopis-Lorente et al., 2020).

 

Task: The dataset can be used to study causal discovery methods aiming to infer ion channels selection for the drug-induced TdP risk.

 

Summary: 



Size of dataset: 109 x 16

Task: Causal Discovery Problem

Data Type: Mixed Data

Dataset Scope: Standalone Dataset

Ground Truth: Unknown Graph

Temporal Structure: Static Data

License: CC BY-NC 4.0 (see https://pubs.acs.org/page/policy/authorchoice_termsofuse.html)

Missing Values: Existing Missing Values


 

Missingness Statement: A dash in the dataset means that no value was found publicly available, thus it was considered that the drug effect on that current was negligible (Llopis-Lorente et al., 2020).

 

Features:



Class: Torsadogenic risk characterization.  Class 1 (known risk of TdP), class 2 (possible risk of TdP), class 3 (conditional risk of TdP), and class 4 (drugs with a lack of evidence of TdP).

EFTPC: Effective free therapeutic plasma concentration. EFTPC is the minimum concentration of the unbound form of a drug in plasma required to produce the intended therapeutic effect in the body.

IC50[...]: Value that represents the minimal concentration of a drug that is required for 50% inhibition in vitrovalues (given in nm). Drugs are in the set {Kr, INa,INaL, ICaL, IKs, IK1, Ito}.

h[...]: Hill coefficients of the currents. Drugs are in the set {Kr, INa,INaL, ICaL, IKs, IK1, Ito}.


 

Files: 



med_file.csv: dataset
DOI: 10.5281/zenodo.8058963
title: Drug-Induced TdP Risk Assessment

description: A manually collected dataset that investigates the proarrhythmic risk of 109 drugs using parameters obtained from biophysical models. The dataset provides 4 torsade de pointes (TdP) risk categories.  For all 109 drugs, IC50 values and Hill coefficients (h) for INa, INaL, IKr, Ito, ICaL, IK1, and IKs and human effective free therapeutic plasma concentration (EFTPC) were obtained (Llopis-Lorente et al., 2020).

 

Task: The dataset can be used to study causal discovery methods aiming to infer ion channels selection for the drug-induced TdP risk.

 

Summary: 



Size of dataset: 109 x 16

Task: Causal Discovery Problem

Data Type: Mixed Data

Dataset Scope: Standalone Dataset

Ground Truth: Unknown Graph

Temporal Structure: Static Data

License: CC BY-NC 4.0 (see https://pubs.acs.org/page/policy/authorchoice_termsofuse.html)

Missing Values: Existing Missing Values


 

Missingness Statement: A dash in the dataset means that no value was found publicly available, thus it was considered that the drug effect on that current was negligible (Llopis-Lorente et al., 2020).

 

Features:



Class: Torsadogenic risk characterization.  Class 1 (known risk of TdP), class 2 (possible risk of TdP), class 3 (conditional risk of TdP), and class 4 (drugs with a lack of evidence of TdP).

EFTPC: Effective free therapeutic plasma concentration. EFTPC is the minimum concentration of the unbound form of a drug in plasma required to produce the intended therapeutic effect in the body.

IC50[...]: Value that represents the minimal concentration of a drug that is required for 50% inhibition in vitrovalues (given in nm). Drugs are in the set {Kr, INa,INaL, ICaL, IKs, IK1, Ito}.

h[...]: Hill coefficients of the currents. Drugs are in the set {Kr, INa,INaL, ICaL, IKs, IK1, Ito}.


 

Files: 



med_file.csv: dataset
DOI: 10.15468/dl.y53t23
title: Occurrence Download

description: A dataset containing 310 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Rubroboletus lupinus"
 ]
}

 The dataset includes 310 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012446-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qg2y8b
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Mitotichthys mollisoni"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012445-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.121581
title: ECB7470 New Visitor's Centre, Botanic Gardens, Cambridge 2025: Cambridge Archaeological Unit Digital Archive

description: Between the 20th and 23rd January 2025 the Cambridge Archaeological Unit (CAU) undertook a field evaluation by trial trenching at the Botanic Gardens, Cambridge (centred TL 45717 57337), on behalf of the Estates Division, University of Cambridge. The evaluation identified an approximately east–west aligned linear ditch of unknown date. A stratigraphic sequence of deposits of c.0.90m depth was encountered which comprised two soil profiles separated by a thin horizon of made ground or geological upcast. The lowermost of these soil profiles contains pottery and clay pipe of 19th century date. The digital archive comprises the WSI, the Evaluation Report and OASIS form, the context register, finds catalogue, and original photographs included in the report; and the final site plan.
DOI: 10.6084/m9.figshare.30200041
title: Kiwa_tyleri_Measurements .xlsx

description: This dataset contains morphological measurements of vent-endemic Yeti crabs (<i>Kiwa tyleri</i>) collected during laboratory experiments. Measurements include carapace length and width, merus segment lengths and heights, pleon width, branchial chambers length and rostrum dimensions for both male and female specimens. The data were used to analyze sex-specific growth patterns, reproductive investment, and adaptations to low-oxygen environments. Raw data are provided in CSV/XLSX format, with column headers describing each variable. This dataset can be used for comparative studies on deep-sea crustacean morphology, reproductive ecology, and growth analyses.
DOI: 10.6084/m9.figshare.30200041.v1
title: Kiwa_tyleri_Measurements .xlsx

description: This dataset contains morphological measurements of vent-endemic Yeti crabs (<i>Kiwa tyleri</i>) collected during laboratory experiments. Measurements include carapace length and width, merus segment lengths and heights, pleon width, branchial chambers length and rostrum dimensions for both male and female specimens. The data were used to analyze sex-specific growth patterns, reproductive investment, and adaptations to low-oxygen environments. Raw data are provided in CSV/XLSX format, with column headers describing each variable. This dataset can be used for comparative studies on deep-sea crustacean morphology, reproductive ecology, and growth analyses.
DOI: 10.15468/dl.nx7s3a
title: Occurrence Download

description: A dataset containing 3040 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geranium phaeum",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3040 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012452-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.495dfk
title: Occurrence Download

description: A dataset listing the 258297 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 258297 records were derived from 4010 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012426-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/99szs7
title: Filling in another piece of the puzzle: Using Integrative Taxonomy to establish yet another new species of Hediste (Annelida, Polychaeta, Nereididae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Costa, Dimítri De Araújo, Rocha, Sónia, Martins, Duarte, Venâncio, Márcia, Ureña, Marta, Almeida, João, Ferreira, Gilmax Gonçalves, Christoffersen, Martin Lindsey, Antunes, Carlos (2025): Filling in another piece of the puzzle: Using Integrative Taxonomy to establish yet another new species of Hediste (Annelida, Polychaeta, Nereididae). Zootaxa 5696 (1): 28-40, DOI: 10.11646/zootaxa.5696.1.2, URL: https://doi.org/10.11646/zootaxa.5696.1.2AbstractOne of the most prevalent autochthonous polychaete taxa in the European Atlantic and Mediterranean seas is the genus Hediste (Nereididae, Polychaeta, Annelida). Its species provide food for aquatic life, such as fish and crustaceans, playing significant ecological roles in trophic webs. Until 2022, only the species Hediste diversicolor was referenced for Atlantic and Mediterranean waters; nonetheless, it is a cryptic species, in which Hediste pontii in the Adriatic Sea, and Hediste astae in the Aegean, Black, Caspian, and Baltic seas have recently been established. In this paper, we propose a new species of polychaete, Hediste sinesimplex sp. nov. for the Western Mediterranean, Baltic and Eastern North seas, based on an integrative approach, focusing on traditional taxonomy and DNA barcoding analysis. In addition to the morphological description, we have also included 3D models of this new species to exemplify the use of this technique for in-depth morphological description.
DOI: 10.15468/k8tvme
title: Volvariella griseoalba (Agaricales, Volvariellaceae), a new species from Punjab, Pakistan

description: This dataset contains the digitized treatments in Plazi based on the original journal article Arshad, Wasiqa, Ijaz, Hira, Khan, Mehboobullah, Yasmeen, Aneela, Zhao, Chang-Lin, Ghafoor, Aneeqa, Komal, Eisha, Niazi, Abdul Rahman, Jabeen, Sana (2024): Volvariella griseoalba (Agaricales, Volvariellaceae), a new species from Punjab, Pakistan. Phytotaxa 661 (1): 31-46, DOI: 10.11646/phytotaxa.661.1.2, URL: http://dx.doi.org/10.11646/phytotaxa.661.1.2AbstractVolvariella griseoalba is described as a new species from Punjab, Pakistan.The species was separated from its morphologically closest relative, V. sathei by its shiny greyish-white, umbonate pileus, subglobose to broadly ellipsoid basidiospores, utriform cheilocystidia and a white to brown volva. Molecular phylogenetic analyses of ITS and LSU region of the nrDNA also supported the studied taxon as a distinct species in Volvariella.
DOI: 10.15468/rbzrkq
title: Oreocharis uniflora, a new species of Gesneriaceae from Guangdong, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yang, Li-Hua, Huang, Jing-Zhong, Deng, Fang-Dong, Kang, Ming (2017): Oreocharis uniflora, a new species of Gesneriaceae from Guangdong, China. Phytotaxa 295 (3): 292-296, DOI: 10.11646/phytotaxa.295.3.11, URL: http://dx.doi.org/10.11646/phytotaxa.295.3.11AbstractOreocharis uniflora, a new species of Gesneriaceae from Guangdong, China, is described and illustrated. The new species is morphologically similar to O. striata and O. lungshengensis, but differs mainly by its white villous leaf blades and petioles, 1-flowered cymes, shorter peduncles (1.8–3.5 cm long), 3–5-serrate calyx lobes, pale purple to reddish purple corollas, inside with longitudinally purple striations, campanulate-tubular corolla tubes, 4 free stamens, and 1 disc-shaped stigma. Based on the current information, O. uniflora should be considered as ‘Critically Endangered’ (CR), following the IUCN categories and criteria.
DOI: 10.15468/3va93u
title: Stemphylium persianum sp. nov., (Pleosporales, Ascomycota) from Iran

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ahmadpour, Abdollah, Ghosta, Youbert, Alavi, Fatemeh, Alavi, Zahra, Karunarathna, Samantha C., Tibpromma, Saowaluck (2024): Stemphylium persianum sp. nov., (Pleosporales, Ascomycota) from Iran. Phytotaxa 650 (1): 47-59, DOI: 10.11646/phytotaxa.650.1.4, URL: http://dx.doi.org/10.11646/phytotaxa.650.1.4AbstractStemphylium species are saprophytes, or plant pathogens mostly associated with economically important crops. In this study, we isolated Stemphylium strains from grey to brown lesions on the culms of Schoenoplectus sp. (Cyperaceae, Poales). Based on combined morphological characteristics and sequence data of the internal transcribed spacer (ITS‒rDNA) region, parts of glyceraldehyde-3-phosphate dehydrogenase (gapdh) and calmodulin (cmdA) genes, the studied Stemphylium strains were identified and described herein as a new species, S. persianum. The new species is phylogenetically closely related to S. halophilum and S. lycii, however, they are distinguishable based on conidiophores, conidia, and ascospores morphology. Detailed morphological descriptions, illustrations, and phylogenetic relationships with other Stemphylium species are provided herein.
DOI: 10.15468/262jbt
title: A new species of the genus Boulenophrys (Anura, Megophryidae) from Guizhou, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Liu, Jing, Feng, Chao-Bo, Shen, Tuo, Li, Shi-Ze, Cheng, Yanlin, Wei, Gang, Wang, Bin, Su, Haijun (2025): A new species of the genus Boulenophrys (Anura, Megophryidae) from Guizhou, China. Herpetozoa 38: 117-136, DOI: 10.3897/herpetozoa.38.e155430AbstractBased on morphological and molecular phylogenetic analyses, a new species of the genus Boulenophrys is described from Yezhong Nature Reserve, Shuicheng County, Guizhou Province, China. Phylogenetic analyses based on the mitochondrial genes 16 S rRNA and COI indicate that this new species represents an independent species-level lineage, closely related to B. fanjingmontis, B. qianbeiensis, B. sangzhiensis, and B. spinata. The new species is distinguished from its congeners by a combination of the following characteristics: (1) body size moderate (SVL 41.2–46.2 mm in adult males and 51.8–58.6 mm in adult females); (2) a single small horn-like tubercle at the edge of each upper eyelid; (3) vomerine teeth absent; (4) tongue not notched posteriorly; (5) tympanum distinctly visible, round; (6) toes with rudimentary webbing and narrow lateral fringes; (7) heels overlapping when thighs are positioned at right angles to the body; (8) tibiotarsal articulation reaching the level of the middle of the eye when the leg is stretched forward; (9) a single internal subgular vocal sac in males; (10) in breeding males, the nuptial pads have black nuptial spines on the bases of the first and second fingers.
DOI: 10.15468/uszr4t
title: The oldest cynodont: new clues on the origin and early diversification of the Cynodontia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Botha, J., Abdala, F., Smith, R. (2007): The oldest cynodont: new clues on the origin and early diversification of the Cynodontia. Zoological Journal of the Linnean Society 149 (3): 477-492, DOI: 10.1111/j.1096-3642.2007.00268.x, URL: https://academic.oup.com/zoolinnean/article-lookup/doi/10.1111/j.1096-3642.2007.00268.x
DOI: 10.15468/6ztp9b
title: Polystichum jinpingense (subg. Haplopolystichum; Dryopteridaceae), a new fern from southeastern Yunnan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Liang, Zhen-Long, Yu, Zhi-Yong, Chen, Wen-Hong, Tunçkol, Bilge, Zhang, Liang, Zhang, Li- Bing (2022): Polystichum jinpingense (subg. Haplopolystichum; Dryopteridaceae), a new fern from southeastern Yunnan, China. Phytotaxa 539 (1): 69-73, DOI: 10.11646/phytotaxa.539.1.8, URL: http://dx.doi.org/10.11646/phytotaxa.539.1.8AbstractA new fern species, Polystichum jinpingense, a member of P. subg. Haplopolystichum sect. Haplopolystichum, is described and illustrated from southeastern Yunnan, China. Polystichum jinpingense is most similar to P. subacutidens in plant size and having numerous pinnae, but the former has thinner (0.7–0.9 mm in diam.) rachis, oblong pinnae, pinna margins undulate, and pinna apex cuspidate, whereas the latter has thicker (1.1–1.4 mm in diam.) rachis, triangular pinnae, pinna margins serrate, and pinna apex acuminate. Polystichum jinpingense has an extremely narrow distribution and is classified as Critically Endangered (CR) following IUCN Red List Criteria.
DOI: 10.15468/sqpdfk
title: Redescription and first record in South America of Neogriphoneura timida Curran (Diptera, Lauxaniidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mello, Ramon Luciano, Mahlmann, Thiago, Silva, Vera Cristina (2017): Redescription and first record in South America of Neogriphoneura timida Curran (Diptera, Lauxaniidae). Revista Brasileira de Entomologia 61: 1-5, DOI: 10.1016/j.rbe.2016.10.001