cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/v8bt6-yvd97
title: COS7 tfx CHMP4A and VPS4B(E235Q)

description: Whole cell ECT of COS7 cell expressing CHMP4A and VPS4B(E235Q)
description: <strong>Tilt Series Date:</strong> 2012-03-13</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1.5°, constant angular increment, dosage: 60.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> CHMP4A and VPS4B (E235Q) expression constructs provided by W.Sundquist (Utah)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> lipofectamine transfection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-13-34/rawdata/</p>12mar13_c121_1_Cos74ADN_AT1bt1_0028.mrc,  Tilt Series (Pixel Size 0.9 nm), 561.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        12mar13_c121_1_Cos74ADN_AT1bt1_0028_full.rec,  Reconstruction (Pixel Size 1.8 nm), 722.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2n9j3-k1a11
title: Agrobacterium tumefaciens

description: Agrao VG3101 with Ti plasmid
description: <strong>Tilt Series Date:</strong> 2013-11-08</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Elliot Meyerwitz</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Growth in LB</p>
<strong>Sample Preparation:</strong> Vitrobot blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-11-08-64/rawdata/</p>agro_50008.mrc,  Tilt Series (Pixel Size 0.42 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-11-08-64/rawdata/agro_50008.mrc"
        > <i class="download icon"></i> Download </a></p>

        agro_50008_part121_49.rec,  Reconstruction (Pixel Size 0.0 nm), 516.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-11-08-64/3dimage_48930/agro_50008_part121_49.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/njq3t-9e217
title: Caulobacter 477-CpdRD51A

description: Caulobacter strain carrying a xylose inducible medium copy plasmid that expresses a constitutively active version of CpdR.
description: <strong>Tilt Series Date:</strong> 2013-01-14</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 230.0 eV/Å²,  defocus: -12.0 μm,  magnification: 19500x. </p>
<strong>Acquisition Software:</strong> FEIbatchtomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Peter Chienpchien@biochem.umass.edu</p>
<strong>Purification / Growth Conditions / Treatment:</strong> strain grown with 25 µl/ml spectinomycin and induced with 0.1% Xylose for 8 hours</p>
  aba2013-01-14-35_slicer10138.jpg: Caulobacter crescentus  .  granule
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-01-14-35/rawdata/</p>477_02.mrc,  Tilt Series (Pixel Size 0.5797 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-01-14-35/rawdata/477_02.mrc"
        > <i class="download icon"></i> Download </a></p>

        477_02_part131_71.rec,  Reconstruction (Pixel Size 1.1594 nm), 838.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-01-14-35/3dimage_24588/477_02_part131_71.rec"
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DOI: 10.7910/dvn/ycxdbi
title: Dataset for “The Teacher Work Ability Scale: Development and Validation of a Multidimensional Measure of Perceived Work Ability in the Teaching Profession”

description: This dataset accompanies the study “The Teacher Work Ability Scale: Development and Validation of a Multidimensional Measure of Perceived Work Ability in the Teaching Profession.” It contains the data collected across seven phases of instrument development and validation among Czech primary and lower secondary school teachers. The dataset is intended for researchers interested in scale development, psychometric validation, cross-cultural comparisons, and the study of perceived work ability and related constructs (e.g., job demands, job resources, occupational well-being). It can be used to replicate the reported analyses, conduct secondary analyses, or as a reference point for future cross-national validation of the Teacher Work Ability Scale (TWAS).
DOI: 10.6084/m9.figshare.29987034
title: Simultaneous comparison of the predictive values of two binary diagnostic tests in the presence of categorical covariates

description: Comparison of predictive values of diagnostic tests is a topic of interest in Medical Statistics, and has been the subject of different studies. In clinical practice, it is frequent to observe categorical covariates when comparing diagnostic tests. In this framework, a global hypothesis test is proposed to simultaneously compare the predictive values of two diagnostic tests when in all of the individuals categorical covariates are observed. This hypothesis test is solved through regression models and also by weighted least squares method for the analysis of categorical data. Simulation experiments were carried out to study the asymptotic behavior of these methods when a binary covariate is observed and when a covariate with three categories is observed, and these were compared to the behavior of the global test when the covariate is ignored. In general, the method based on regression models has shown to have better asymptotic behavior than the other methods. Furthermore, we studied the application of the method based on the regression models when no covariate is observed, for which the individuals in the sample are randomly assigned to a binary dummy random variable. Simulation experiments carried out showed that this method has greater power than the method without the covariate. The results were applied to two examples.
DOI: 10.6084/m9.figshare.29987034.v1
title: Simultaneous comparison of the predictive values of two binary diagnostic tests in the presence of categorical covariates

description: Comparison of predictive values of diagnostic tests is a topic of interest in Medical Statistics, and has been the subject of different studies. In clinical practice, it is frequent to observe categorical covariates when comparing diagnostic tests. In this framework, a global hypothesis test is proposed to simultaneously compare the predictive values of two diagnostic tests when in all of the individuals categorical covariates are observed. This hypothesis test is solved through regression models and also by weighted least squares method for the analysis of categorical data. Simulation experiments were carried out to study the asymptotic behavior of these methods when a binary covariate is observed and when a covariate with three categories is observed, and these were compared to the behavior of the global test when the covariate is ignored. In general, the method based on regression models has shown to have better asymptotic behavior than the other methods. Furthermore, we studied the application of the method based on the regression models when no covariate is observed, for which the individuals in the sample are randomly assigned to a binary dummy random variable. Simulation experiments carried out showed that this method has greater power than the method without the covariate. The results were applied to two examples.
DOI: 10.15468/dl.5a4hyd
title: Occurrence Download

description: A dataset containing 885595 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is BirdMap Data - GPS tracking of Storks, Cranes and birds of prey, breeding in Northern and Eastern Europe"
 ]
}

 The dataset includes 885595 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045865-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/47nf1-dje33
title: cryo-PALM sample

description: Myxococcus Xanthus SA5720 strain, VipA-PAGFP, correlated cryo-PALM/ECT, at lease 5 min laser exposure
description: <strong>Tilt Series Date:</strong> 2012-12-05</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-40.0°, 55.0°), step: 1.0°, constant angular increment, dosage: 87.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFTomo</p>
<strong>Collaborators and Roles:</strong> Strain from Lotte Søgaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown in CTT medium at 30 degrees to OD600=0.6</p>
<strong>Sample Preparation:</strong> Vitrobot settings: 100% humidity, 3µl sample, 10 nm BSA treated gold. -3 offset, 4 sec blot time, no drain. Ethane/propane mix.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2012-12-05-9/rawdata/</p>Myxo_SA5720_cryoPALM0007.mrc,  Tilt Series (Pixel Size 0.5 nm), 2.7 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        Myxo_SA5720_cryoPALM0007_part97_22.rec,  Reconstruction (Pixel Size 2.0 nm), 441.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.gehcpp
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pterorhinus waddelli",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 224 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045895-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xf5vjt
title: Occurrence Download

description: A dataset containing 217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Poterium sanguisorba",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 217 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045897-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/c6snh-0bq47
title: UU 2804- A413T CheA deltaP2

description: E. coli strain A413T (locked in CheA off state) with deletion of P2 in CheA
description: <strong>Tilt Series Date:</strong> 2012-08-31</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFtomo/IMOD/tomo3D</p>
<strong>Collaborators and Roles:</strong> John S. Parkinson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells grown to log phase in TB media, lysed with penicillin for one hour</p>
<strong>Sample Preparation:</strong> plunge frozen on R2/2 Quantifoil grids in liquid ethane/propane</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-08-31-14/rawdata/</p>2804atlas10014.mrc,  Tilt Series (Pixel Size 0.33 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-08-31-14/rawdata/2804atlas10014.mrc"
        > <i class="download icon"></i> Download </a></p>

        2804atlas10014_part130_1.rec,  Reconstruction (Pixel Size 0.66 nm), 2.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-08-31-14/3dimage_20598/2804atlas10014_part130_1.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/b9w9w-5tv29
title: HUVECs infx pNLGFPBglI

description: Raw data files of HUVECs infx pNLGFPBglI
description: <strong>Tilt Series Date:</strong> 2013-08-17</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFTomo</p>
<strong>Collaborators and Roles:</strong> pNLGFPBglI obtained from Irvin Chen (UCLA)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Whole cells were grown on Au finder grids and infected with pNLGFPBglI. Sample frozen 24h post infection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-08-17-3/rawdata/</p>13aug17_C167_1_HUVECspNLBglI224hPI_AT1BT1_0003.mrc,  Tilt Series (Pixel Size 0.5 nm), 2.3 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        13aug17_C167_1_HUVECspNLBglI224hPI_AT1BT1_0003_full.rec,  Reconstruction (Pixel Size 2.0 nm), 534.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/1d0n9-8mh50
title: COS7 pNLGFP

description: Cos7 cells transfected with pNLGFP provirus construct. Sample #C112
description: <strong>Tilt Series Date:</strong> 2012-05-14</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> pNLGFP construct provided by Irvin Chen, UCLA. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected using lipofectamine</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-05-14-20/3dimage_69348/</p>12may14_C112_2_pNLonly_AT3BT1d_0011_full.rec,  Reconstruction (Pixel Size 2.0 nm), 619.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        12may14_C112_2_pNLonly_AT3BT1d_0011.mrc,  Tilt Series (Pixel Size 0.5 nm), 677.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.6egg55
title: Occurrence Download

description: A dataset containing 503 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Poterium sanguisorba",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 503 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045898-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/6x7m6-0fw78
title: TRIM5-21R delSpry

description: TRIM5-21R delSpry 2D lattice prepared by Barbie Ganser-Pornillos and  Viswanathan Chandrasekaran
description: <strong>Tilt Series Date:</strong> 2012-11-22</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: None μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Viswanathan Chandrasekarangrids purified the protein, Barbie Ganser-Pornillos assembled protein into 2D lattice. The sample was was plunge frozen and imaged at Caltech by Cora Woodward</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-11-22-13/rawdata/</p>12nov22_TRIM5_21R_delSpry_grid3_AT5BT10013.mrc,  Tilt Series (Pixel Size 0.45 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        12nov22_TRIM5_21R_delSpry_grid3_AT5BT10013_full.rec,  Reconstruction (Pixel Size 1.8 nm), 353.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/aj0bb-bqq27
title: HeLa cells

description: looking for midbodies
description: <strong>Tilt Series Date:</strong> 2014-11-18</p>
<strong>Data Taken By:</strong> Rasika Ramdasi</p>
<strong>Species / Specimen:</strong> HeLa cells</p>
<strong>Strain:</strong> ATCC</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-55.0°, 55.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSF tomo</p>
<strong>Collaborators and Roles:</strong> cells and siRNA obtained from Doug Mackay/ Cathrine Ullman</p>
<strong>Sample Preparation:</strong> HeLa cells+ siRNA NUP153+ Thymidine 2mM, 14 h post thymidine release</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-11-18-16/rawdata/</p>midbody10004.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-11-18-16/rawdata/midbody10004.mrc"
        > <i class="download icon"></i> Download </a></p>

        midbody10004.rec,  Reconstruction (Pixel Size 2.4 nm), 1.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-11-18-16/3dimage_48192/midbody10004.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6xckd-2bd27
title: Agro VirB8-GFP

description: Raw data files of Agro VirB8-GFP
description: <strong>Tilt Series Date:</strong> 2013-07-08</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown for induction of T-pili at 19C</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-08-18/rawdata/</p>VirB8_Titan0018.mrc,  Tilt Series (Pixel Size 0.42 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-08-18/rawdata/VirB8_Titan0018.mrc"
        > <i class="download icon"></i> Download </a></p>

        VirB8_Titan0018_full.rec,  Reconstruction (Pixel Size 1.68 nm), 516.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>