cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15159/phytop.110
title: Small lakes 2017

description: Methods of phytoplankton processing. Samples were preserved with Lugol’s (acidified iodine) solution and processed using the Utermöhl (1958) method. Phytoplankton biomass was calculated from counts of cells or colonies using a Nikon Eclipse Ti-S inverted microscope at x200 and x400 magnification. Preserved sample (3 ml) was settled overnight. Identification and measurements took place in the course of counting. Counting units are independent (single) algal cells, colonies or filaments/trichomes. Biovolumes of algal cells, colonies and/or filaments were calculated using assigned geometric shapes dimensions, and converted to biomass assuming the specific density of 1 g cm-3 in accordance with Edler (1979). References of methods accepted Approved by CEN on 14 July 2006 “Water quality - Guidance standard on the enumeration of phytoplankton using inverted microscopy (Utermöhl technique)” (CEN 15204, 2006) European Standard EN 15204:2006 Edler, L. (ed.) 1979. Recommendations on methods for marine biological studies in the Baltic Sea. Phytoplankton and chlorophyll. – BMB WG 9. Utermöhl, H., (1958). Zur Vervollkommnung der quantitativen Phytoplankton-Methodik. Mitteilungen der Internationale Vereinigung für Theoretische und Angewandte Limnologie 9: 1-38. Biovolume calculation for pelagic and benthic microalgae | Request PDF. Available from: https://www.researchgate.net/publication/220031275_Biovolume_calculation_for_pelagic_and_benthic_microalgae [accessed Oct 29 2018]. The most commonly used traditional biomass estimate for microalgae is cell biovolume, which is calculated from microscopically measured linear dimensions (Steinman et al. 1991, Snoeijs 1994, Sommer 1994, 1995, Hillebrand and Sommer 1997). Huber-Pestalozzi, G., Komarek, J., Fott, B. 1983. Das Phytoplankton des Süsswassers. 7(1). Chlorophyceae. Chlorococcales. Stuttgart. 1044. S. Komarek, J., Anagnostidis, K. 1999. Süsswasserflora von Mitteleuropa. 19/1. Cyanoprocaryota. 1. Chroococcales. Elsevier Spectrum Academischer Verlag. Heidelberg. Berlin. 548 S. Komarek, J., Anagnostidis, K. 2005. Süsswasserflora von Mitteleuropa. 19/2. Cyanoprocaryota. 2. Oscillatoriales. Elsevier Spectrum Academischer Verlag. 759 S. Komárek, J., 2013. Cyanoprokaryota 3. Teil: Heterocystous Genera. Süsswasserflora von Mitteleuropa. B. 19/3. Springer Spektrum. 1130 S. Krammer, K., Lange-Bertalot, H. 1997-1991. Süsswasserflora von Mitteleuropa. Bacillariophyceae. B. 2, 1-4. Spectrum Academischer Verlag.Heidelberg. Berlin. Popovský, J., Pfiester, L.A. 2008. Dinophyceae (Dinoflagellida). Süsswasserflora von Mitteleuropa. B. 6. Springer Spektrum. 272 S. Косинская Е.К. 1960. Флора споровых растений СССР. Том 5. Конъюгаты и Сцеплянки. (2). Изд. АН СССР. Москва-Ленинград. 706 стр. In Russian.
DOI: 10.6084/m9.figshare.21815181
title: Supplementary Material for: Laparoscopic versus open approach for Siewert-type II/III adenocarcinoma of the esophagogastric junction: A systematic review and meta-analysis

description: Introduction Due to the specific location, the potential advantages of laparoscopic gastrectomy (LG) compared with open gastrectomy (OG) for Siewert II/III adenocarcinoma of the esophagogastric junction (AEG) remain uncertain. The current study aimed to compare the short- and long-term outcomes of LG versus OG in treating Siewert type II/III adenocarcinoma. Methods We searched PubMed, Embase, Web of Science, Medline (hosted by Ovid), and the Cochrane Library for publications, till July 2022 and then used the Revman5.3 software for statistical analysis. Results Ten publications from 10 medical centres were included, with 1516 cases from the LG group and 1219 from the OG group. Meta-analysis results showed that the LG group was superior to the OG group in intraoperative blood loss, hospital stay, lymph nodes retrieved, time to ambulation, time to first flatus, time to diet, 5-year overall survival, and 5-year disease-free survival. There was no significant difference between the two groups in operative time, overall complications, proximal margin, distal margin, pulmonary infection, anastomotic leakage, mortality, ileus, or absolute infection. Conclusions Compared with OG, LG is associated with better surgical and long-term outcomes in Siewert type II/III AEG. LG is a safe and feasible option for treating Siewert type II/III AEG. However, studies with large sample sizes, long follow-up periods, and rigorous designs are needed for verification.
DOI: 10.6084/m9.figshare.21815181.v1
title: Supplementary Material for: Laparoscopic versus open approach for Siewert-type II/III adenocarcinoma of the esophagogastric junction: A systematic review and meta-analysis

description: Introduction Due to the specific location, the potential advantages of laparoscopic gastrectomy (LG) compared with open gastrectomy (OG) for Siewert II/III adenocarcinoma of the esophagogastric junction (AEG) remain uncertain. The current study aimed to compare the short- and long-term outcomes of LG versus OG in treating Siewert type II/III adenocarcinoma. Methods We searched PubMed, Embase, Web of Science, Medline (hosted by Ovid), and the Cochrane Library for publications, till July 2022 and then used the Revman5.3 software for statistical analysis. Results Ten publications from 10 medical centres were included, with 1516 cases from the LG group and 1219 from the OG group. Meta-analysis results showed that the LG group was superior to the OG group in intraoperative blood loss, hospital stay, lymph nodes retrieved, time to ambulation, time to first flatus, time to diet, 5-year overall survival, and 5-year disease-free survival. There was no significant difference between the two groups in operative time, overall complications, proximal margin, distal margin, pulmonary infection, anastomotic leakage, mortality, ileus, or absolute infection. Conclusions Compared with OG, LG is associated with better surgical and long-term outcomes in Siewert type II/III AEG. LG is a safe and feasible option for treating Siewert type II/III AEG. However, studies with large sample sizes, long follow-up periods, and rigorous designs are needed for verification.
DOI: 10.24378/exe.4064
title: Assessment of cognitive biases in Augmented Reality: Beyond eye tracking (dataset)

description: Data collected for a project: "Augmented reality as a tool for cognitive debiasing: A pilot study to identify behavioural markers that indicate cognitive biases." funded by Phase 1, Defence and Security Accelerator (Behavioural Analytics) Contract Number DSTLX1000133918. Include are data from 40 participants. Data files are in the text format. Files contain recordings of hand, head and eye movements recorded during an odd-one-out task. An additional file contains short comprehensive assessment of rational thinking (CART) scores. xx_OOO_hand.csv - each file with hand movements has the following columns: % timestamp - seconds and fractions of seconds % year, % month, % day, % hour, % minute, % second, % 1st detected hand marker: 1001 - right, 1002 - left % x - x position in the leapmotion frame % y - y position in the leapmotion frame % z - z position in the leapmotion frame % 2nd detected hand marker: 1001 - right, 1002 - left % x - x position in the leapmotion frame % y - y position in the leapmotion frame % z - z position in the leapmotion frame xx_OOO_head.csv - each file with head rotations has the following columns: % timestamp - seconds and fractions of seconds % year, % month, % day, % hour, % minute, % second, % x - rotation % y - rotation % z - rotation xx_OOO_gaze.csv - each file with gaze positions has the following columns extracted from the pupil-labs export file: % timestamp - posixtime with 'TimeZone' 'Europe/London' % confidence - computed confidence between 0 (not confident) 1 (confident) % x - x position in the world image frame in normalized coordinates % y - y position in the world image frame in normalized coordinates xx_OOO_response.csv - each file the odd-one-out task responses has the following columns: % year, % month, % day, % hour, % minute, % second, % task number, % 2nd response, % 1st response xx_OOO_walltime.csv - each file contains: % timestamp - time saved as matlab serial date short_CART_score.csv - file with the short CART score for each participant (in order). The file has following columns: % duration in seconds % indicator that a participant completed CART % short CART score Matlab code used to analyse the data can be accessed at: https://osf.io/kcd83/
DOI: 10.6084/m9.figshare.21781634
title: raw data

description: <strong>Background: </strong>Pancreatic adenocarcinoma (PAAD) is a highly lethal disease with a poor prognosis. Increasing evidence indicates that immunophenotyping can reveal the combined immune status of the tumor, which is closely related to treatment response and patient prognosis. Therefore, in this study, a comprehensive analysis of the potential prognostic values of immune-related genes in PAAD was performed. <strong>Methods: </strong>The data of PAAD patients were obtained from TCGA and GEO databases. Immune cell infiltration (ICI) analysis was conducted using the CIBERSORT algorithm. ICI classification was then performed with the ConsensusClusterPlus package based on the CIBERSORT results. Immune-related differentially expressed genes (DEGs), which were screened from the ICI subtypes, were applied to identify the prognosis-related feature genes in PAAD. Further univariate Cox regression analysis, least absolute shrinkage and selection operator (LASSO) regression and multivariate Cox regression analysis were performed to determine the hub genes. ROC curves, survival analysis and a nomogram were used to assess the risk score model constructed with hub genes. The biological functions of the hub genes were annotated via GSEA. Furthermore, the correlation between the expression of hub genes and the infiltration of macrophages and CD8+ T cells was assessed via immunohistochemistry (IHC) in 19 PAAD samples. <strong>Results: </strong>Analyses of the TCGA and GEO databases revealed that both KRT7 and ITGB6 were strongly linked to a worse prognosis in PAAD. Then, KRT7 and ITGB6 were used to stratify the PAAD patients into low- and high-risk subgroups. The high-risk group had a poorer prognosis and less immune cell infiltration than the low-risk group. GSEA showed that ITGB6 and KRT7 were mainly enriched in the P53 signaling, cadherin binding and NF-κB binding pathways. Furthermore, KRT7 and ITGB6 expression was correlated with the infiltration of macrophages and CD8+ T cells in the TME, which was verified by IHC analysis. <strong>Conclusion:</strong> Both KRT7 and ITGB6 are promising biomarkers of PAAD prognosis.
DOI: 10.6084/m9.figshare.21781634.v3
title: raw data

description: <strong>Background: </strong>Pancreatic adenocarcinoma (PAAD) is a highly lethal disease with a poor prognosis. Increasing evidence indicates that immunophenotyping can reveal the combined immune status of the tumor, which is closely related to treatment response and patient prognosis. Therefore, in this study, a comprehensive analysis of the potential prognostic values of immune-related genes in PAAD was performed. <strong>Methods: </strong>The data of PAAD patients were obtained from TCGA and GEO databases. Immune cell infiltration (ICI) analysis was conducted using the CIBERSORT algorithm. ICI classification was then performed with the ConsensusClusterPlus package based on the CIBERSORT results. Immune-related differentially expressed genes (DEGs), which were screened from the ICI subtypes, were applied to identify the prognosis-related feature genes in PAAD. Further univariate Cox regression analysis, least absolute shrinkage and selection operator (LASSO) regression and multivariate Cox regression analysis were performed to determine the hub genes. ROC curves, survival analysis and a nomogram were used to assess the risk score model constructed with hub genes. The biological functions of the hub genes were annotated via GSEA. Furthermore, the correlation between the expression of hub genes and the infiltration of macrophages and CD8+ T cells was assessed via immunohistochemistry (IHC) in 19 PAAD samples. <strong>Results: </strong>Analyses of the TCGA and GEO databases revealed that both KRT7 and ITGB6 were strongly linked to a worse prognosis in PAAD. Then, KRT7 and ITGB6 were used to stratify the PAAD patients into low- and high-risk subgroups. The high-risk group had a poorer prognosis and less immune cell infiltration than the low-risk group. GSEA showed that ITGB6 and KRT7 were mainly enriched in the P53 signaling, cadherin binding and NF-κB binding pathways. Furthermore, KRT7 and ITGB6 expression was correlated with the infiltration of macrophages and CD8+ T cells in the TME, which was verified by IHC analysis. <strong>Conclusion:</strong> Both KRT7 and ITGB6 are promising biomarkers of PAAD prognosis.
DOI: 10.6084/m9.figshare.21781634.v2
title: original data

description: <strong>Background: </strong>Pancreatic adenocarcinoma (PAAD) is a highly lethal disease with a poor prognosis. Increasing evidence indicates that immunophenotyping can reveal the combined immune status of the tumor, which is closely related to treatment response and patient prognosis. Therefore, in this study, a comprehensive analysis of the potential prognostic values of immune-related genes in PAAD was performed. <strong>Methods: </strong>The data of PAAD patients were obtained from TCGA and GEO databases. Immune cell infiltration (ICI) analysis was conducted using the CIBERSORT algorithm. ICI classification was then performed with the ConsensusClusterPlus package based on the CIBERSORT results. Immune-related differentially expressed genes (DEGs), which were screened from the ICI subtypes, were applied to identify the prognosis-related feature genes in PAAD. Further univariate Cox regression analysis, least absolute shrinkage and selection operator (LASSO) regression and multivariate Cox regression analysis were performed to determine the hub genes. ROC curves, survival analysis and a nomogram were used to assess the risk score model constructed with hub genes. The biological functions of the hub genes were annotated via GSEA. Furthermore, the correlation between the expression of hub genes and the infiltration of macrophages and CD8+ T cells was assessed via immunohistochemistry (IHC) in 19 PAAD samples. <strong>Results: </strong>Analyses of the TCGA and GEO databases revealed that both KRT7 and ITGB6 were strongly linked to a worse prognosis in PAAD. Then, KRT7 and ITGB6 were used to stratify the PAAD patients into low- and high-risk subgroups. The high-risk group had a poorer prognosis and less immune cell infiltration than the low-risk group. GSEA showed that ITGB6 and KRT7 were mainly enriched in the P53 signaling, cadherin binding and NF-κB binding pathways. Furthermore, KRT7 and ITGB6 expression was correlated with the infiltration of macrophages and CD8+ T cells in the TME, which was verified by IHC analysis. <strong>Conclusion:</strong> Both KRT7 and ITGB6 are promising biomarkers of PAAD prognosis.
DOI: 10.15159/phytop.111
title: Small lakes 2018

description: Methods of phytoplankton processing. Samples were preserved with Lugol’s (acidified iodine) solution and processed using the Utermöhl (1958) method. Phytoplankton biomass was calculated from counts of cells or colonies using a Nikon Eclipse Ti-S inverted microscope at x200 and x400 magnification. Preserved sample (3 ml) was settled overnight. Identification and measurements took place in the course of counting. Counting units are independent (single) algal cells, colonies or filaments/trichomes. Biovolumes of algal cells, colonies and/or filaments were calculated using assigned geometric shapes dimensions, and converted to biomass assuming the specific density of 1 g cm-3 in accordance with Edler (1979). References of methods accepted Approved by CEN on 14 July 2006 “Water quality - Guidance standard on the enumeration of phytoplankton using inverted microscopy (Utermöhl technique)” (CEN 15204, 2006) European Standard EN 15204:2006 Edler, L. (ed.) 1979. Recommendations on methods for marine biological studies in the Baltic Sea. Phytoplankton and chlorophyll. – BMB WG 9. Utermöhl, H., (1958). Zur Vervollkommnung der quantitativen Phytoplankton-Methodik. Mitteilungen der Internationale Vereinigung für Theoretische und Angewandte Limnologie 9: 1-38. Biovolume calculation for pelagic and benthic microalgae | Request PDF. Available from: https://www.researchgate.net/publication/220031275_Biovolume_calculation_for_pelagic_and_benthic_microalgae [accessed Oct 29 2018]. The most commonly used traditional biomass estimate for microalgae is cell biovolume, which is calculated from microscopically measured linear dimensions (Steinman et al. 1991, Snoeijs 1994, Sommer 1994, 1995, Hillebrand and Sommer 1997). Huber-Pestalozzi, G., Komarek, J., Fott, B. 1983. Das Phytoplankton des Süsswassers. 7(1). Chlorophyceae. Chlorococcales. Stuttgart. 1044. S. Komarek, J., Anagnostidis, K. 1999. Süsswasserflora von Mitteleuropa. 19/1. Cyanoprocaryota. 1. Chroococcales. Elsevier Spectrum Academischer Verlag. Heidelberg. Berlin. 548 S. Komarek, J., Anagnostidis, K. 2005. Süsswasserflora von Mitteleuropa. 19/2. Cyanoprocaryota. 2. Oscillatoriales. Elsevier Spectrum Academischer Verlag. 759 S. Komárek, J., 2013. Cyanoprokaryota 3. Teil: Heterocystous Genera. Süsswasserflora von Mitteleuropa. B. 19/3. Springer Spektrum. 1130 S. Krammer, K., Lange-Bertalot, H. 1997-1991. Süsswasserflora von Mitteleuropa. Bacillariophyceae. B. 2, 1-4. Spectrum Academischer Verlag.Heidelberg. Berlin. Popovský, J., Pfiester, L.A. 2008. Dinophyceae (Dinoflagellida). Süsswasserflora von Mitteleuropa. B. 6. Springer Spektrum. 272 S. Косинская Е.К. 1960. Флора споровых растений СССР. Том 5. Конъюгаты и Сцеплянки. (2). Изд. АН СССР. Москва-Ленинград. 706 стр. In Russian.
DOI: 10.6084/m9.figshare.21815214
title: Supplementary Material for: Laparoscopic versus open approach for Siewert-type II/III adenocarcinoma of the esophagogastric junction: A systematic review and meta-analysis

description: Introduction Due to the specific location, the potential advantages of laparoscopic gastrectomy (LG) compared with open gastrectomy (OG) for Siewert II/III adenocarcinoma of the esophagogastric junction (AEG) remain uncertain. The current study aimed to compare the short- and long-term outcomes of LG versus OG in treating Siewert type II/III adenocarcinoma. Methods We searched PubMed, Embase, Web of Science, Medline (hosted by Ovid), and the Cochrane Library for publications, till July 2022 and then used the Revman5.3 software for statistical analysis. Results Ten publications from 10 medical centres were included, with 1516 cases from the LG group and 1219 from the OG group. Meta-analysis results showed that the LG group was superior to the OG group in intraoperative blood loss, hospital stay, lymph nodes retrieved, time to ambulation, time to first flatus, time to diet, 5-year overall survival, and 5-year disease-free survival. There was no significant difference between the two groups in operative time, overall complications, proximal margin, distal margin, pulmonary infection, anastomotic leakage, mortality, ileus, or absolute infection. Conclusions Compared with OG, LG is associated with better surgical and long-term outcomes in Siewert type II/III AEG. LG is a safe and feasible option for treating Siewert type II/III AEG. However, studies with large sample sizes, long follow-up periods, and rigorous designs are needed for verification.
DOI: 10.6084/m9.figshare.21815214.v1
title: Supplementary Material for: Laparoscopic versus open approach for Siewert-type II/III adenocarcinoma of the esophagogastric junction: A systematic review and meta-analysis

description: Introduction Due to the specific location, the potential advantages of laparoscopic gastrectomy (LG) compared with open gastrectomy (OG) for Siewert II/III adenocarcinoma of the esophagogastric junction (AEG) remain uncertain. The current study aimed to compare the short- and long-term outcomes of LG versus OG in treating Siewert type II/III adenocarcinoma. Methods We searched PubMed, Embase, Web of Science, Medline (hosted by Ovid), and the Cochrane Library for publications, till July 2022 and then used the Revman5.3 software for statistical analysis. Results Ten publications from 10 medical centres were included, with 1516 cases from the LG group and 1219 from the OG group. Meta-analysis results showed that the LG group was superior to the OG group in intraoperative blood loss, hospital stay, lymph nodes retrieved, time to ambulation, time to first flatus, time to diet, 5-year overall survival, and 5-year disease-free survival. There was no significant difference between the two groups in operative time, overall complications, proximal margin, distal margin, pulmonary infection, anastomotic leakage, mortality, ileus, or absolute infection. Conclusions Compared with OG, LG is associated with better surgical and long-term outcomes in Siewert type II/III AEG. LG is a safe and feasible option for treating Siewert type II/III AEG. However, studies with large sample sizes, long follow-up periods, and rigorous designs are needed for verification.
DOI: 10.5517/ccdc.csd.cc2580k1
title: CCDC 2003702: Experimental Crystal Structure Determination

description: Related Article: Yang-Tian Yan, Chen-Yang Wang, Li-Na Zheng, Yun-long Wu, Jiao Liu, Wei-Ping Wu, Wen-Yan Zhang, Yao-Yu Wang|2021|CrystEngComm|23|8315|doi:10.1039/D1CE01274F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc276y9q
title: CCDC 2062253: Experimental Crystal Structure Determination

description: Related Article: Alexandra M. Antonio, Kyle J. Korman, Meaghan M. Deegan, Garrett A. Taggart, Glenn P. A. Yap, Eric D. Bloch|2022|Inorg.Chem.|61|4609|doi:10.1021/acs.inorgchem.1c03519
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc276ycs
title: CCDC 2062255: Experimental Crystal Structure Determination

description: Related Article: Alexandra M. Antonio, Kyle J. Korman, Meaghan M. Deegan, Garrett A. Taggart, Glenn P. A. Yap, Eric D. Bloch|2022|Inorg.Chem.|61|4609|doi:10.1021/acs.inorgchem.1c03519
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc276yfv
title: CCDC 2062257: Experimental Crystal Structure Determination

description: Related Article: Alexandra M. Antonio, Kyle J. Korman, Meaghan M. Deegan, Garrett A. Taggart, Glenn P. A. Yap, Eric D. Bloch|2022|Inorg.Chem.|61|4609|doi:10.1021/acs.inorgchem.1c03519
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.