cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14224611
title: Diversity and distribution of Gnaphalieae in Rio de Janeiro – Brazil

description: We present here the checklist of the 8 genera (Achyrocline, Chevreulia, Chionolaena, Facelis, Gamochaeta, Gnaphalium, Lucilia and Pseudognaphalium) and 31 species of Gnaphalieae occurring in the Rio de Janeiro State, Brazil. Overall, we obtained 1117 specimen data. The most recent version (v7) solved some errors associated with nbsp and other invisible characters, file extension changed to CSV.
DOI: 10.6084/m9.figshare.24168979
title: Mapping the parent experience of echolalia in autism spectrum disorder onto a conceptual taxonomy

description: Echolalia, the repetition of previously heard speech, is prevalent in a variety of neurologic and psychiatric disorders. Within the context of echolalia in autism spectrum disorder (ASD), research and intervention historically assume a clinical standpoint with two opposing paradigms: behaviourism and developmentalism. The literature is largely silent on how those other than researchers and clinicians understand echolalia. This study examined how parents experience echolalia through their children with ASD. The aim of the study was to ascertain if the parental perception of echolalia in ASD aligns with, or offers alternative perspectives to, current clinically-orientated views. We employed online semi-structured interviews to document the experiences of 126 parents, reflecting on their children with ASD aged 3 to 34 years of age, to determine if the parent experience could be mapped onto existing clinical frameworks, or if they might offer new perspectives. We used hermeneutic phenomenological data analysis in an abductive framework. Echolalia has predominantly been represented in literature through the perspectives of behaviourism or developmentalism. We found however, that echolalia is a phenomenon that is experienced by parents in a variety of different ways to that of the current clinically-orientated understandings. Such new ways of understanding echolalia that emerged from our analysis include one understanding which is dependent upon how echolalia is heard, and one in which parents are “waiting for echolalia to evolve.” The traditional dichotomous clinical positions do not resonate with all parents, and reliance on these traditional perspectives alone may impact effective engagement with parents and the success of interventions and support strategies. Our findings have implications for future research, the education of clinicians and educators, and the design of support and intervention for those who have echolalia.
DOI: 10.6084/m9.figshare.24168979.v1
title: Mapping the parent experience of echolalia in autism spectrum disorder onto a conceptual taxonomy

description: Echolalia, the repetition of previously heard speech, is prevalent in a variety of neurologic and psychiatric disorders. Within the context of echolalia in autism spectrum disorder (ASD), research and intervention historically assume a clinical standpoint with two opposing paradigms: behaviourism and developmentalism. The literature is largely silent on how those other than researchers and clinicians understand echolalia. This study examined how parents experience echolalia through their children with ASD. The aim of the study was to ascertain if the parental perception of echolalia in ASD aligns with, or offers alternative perspectives to, current clinically-orientated views. We employed online semi-structured interviews to document the experiences of 126 parents, reflecting on their children with ASD aged 3 to 34 years of age, to determine if the parent experience could be mapped onto existing clinical frameworks, or if they might offer new perspectives. We used hermeneutic phenomenological data analysis in an abductive framework. Echolalia has predominantly been represented in literature through the perspectives of behaviourism or developmentalism. We found however, that echolalia is a phenomenon that is experienced by parents in a variety of different ways to that of the current clinically-orientated understandings. Such new ways of understanding echolalia that emerged from our analysis include one understanding which is dependent upon how echolalia is heard, and one in which parents are “waiting for echolalia to evolve.” The traditional dichotomous clinical positions do not resonate with all parents, and reliance on these traditional perspectives alone may impact effective engagement with parents and the success of interventions and support strategies. Our findings have implications for future research, the education of clinicians and educators, and the design of support and intervention for those who have echolalia.
DOI: 10.6084/m9.figshare.25204138
title: Evidence to support test interpretation: Evaluating the content validity of a new item set for the Transition Pragmatics Interview

description: There is little consensus on evidence-based practice guidelines for the selection of criterion-referenced assessments. Having confidence in scores from criterion-referenced assessments requires evidence that items align with their intended constructs. The purposes of these studies were to demonstrate evidence of content validity for the revised item set of a developing social communication assessment and to provide clinicians with a model of content validity evaluations that can be generalised to the review of other assessments. In Study 1, 10 experts rated 25 newly-developed items for how well they represented the intended construct. In Study 2, seven participants ages 14–20 were administered the Three Step Test Interview to assess their cognitive processes for responding to new items. Examinee responses were coded for construct-relevant and construct-irrelevant factors. Twenty-three of the 25 newly-developed items were deemed representative of the intended construct by experts and elicited construct-relevant response processes from examinees. The integration of expert review and examinee cognitive interviewing provides a more complete evaluation of the alignment of the items to their intended construct. Transparent reports of the methods and findings of content validity studies strengthen the ability of clinicians to select criterion-referenced assessments that support valid decisions.
DOI: 10.6084/m9.figshare.25204138.v1
title: Evidence to support test interpretation: Evaluating the content validity of a new item set for the Transition Pragmatics Interview

description: There is little consensus on evidence-based practice guidelines for the selection of criterion-referenced assessments. Having confidence in scores from criterion-referenced assessments requires evidence that items align with their intended constructs. The purposes of these studies were to demonstrate evidence of content validity for the revised item set of a developing social communication assessment and to provide clinicians with a model of content validity evaluations that can be generalised to the review of other assessments. In Study 1, 10 experts rated 25 newly-developed items for how well they represented the intended construct. In Study 2, seven participants ages 14–20 were administered the Three Step Test Interview to assess their cognitive processes for responding to new items. Examinee responses were coded for construct-relevant and construct-irrelevant factors. Twenty-three of the 25 newly-developed items were deemed representative of the intended construct by experts and elicited construct-relevant response processes from examinees. The integration of expert review and examinee cognitive interviewing provides a more complete evaluation of the alignment of the items to their intended construct. Transparent reports of the methods and findings of content validity studies strengthen the ability of clinicians to select criterion-referenced assessments that support valid decisions.
DOI: 10.6084/m9.figshare.24517094
title: Utilising collaborative learning strategies with children who use AAC: A pilot online training program for speech-language pathologists

description: Children who utilise augmentative and alternative communication (AAC) have difficulty participating in interactions with peers and speech-language pathologists (SLPs) lack training in the development of activities to specifically target participation. The purpose of the current study was to explore a pilot online training program designed to provide information about the development of collaborative learning (CL) activities to support participation. A single-subject, multiple baseline across six participants in an initial group and a replication group was completed to assess the number of CL elements included in probe responses during baseline, intervention, and maintenance phases. SLPs were highly accurate in their ability to answer multiple choice questions about CL elements (80%–90%); however, the overall effect of the intervention was weak with a Tau-U of 0.48 for the initial group and 0.53 for the replication group. SLPs can begin to develop skills in designing CL activities for children who utilise AAC as a means to support participation and foster social interaction. Future research is necessary to design efficient and effective online training for SLPs.
DOI: 10.6084/m9.figshare.24517094.v1
title: Utilising collaborative learning strategies with children who use AAC: A pilot online training program for speech-language pathologists

description: Children who utilise augmentative and alternative communication (AAC) have difficulty participating in interactions with peers and speech-language pathologists (SLPs) lack training in the development of activities to specifically target participation. The purpose of the current study was to explore a pilot online training program designed to provide information about the development of collaborative learning (CL) activities to support participation. A single-subject, multiple baseline across six participants in an initial group and a replication group was completed to assess the number of CL elements included in probe responses during baseline, intervention, and maintenance phases. SLPs were highly accurate in their ability to answer multiple choice questions about CL elements (80%–90%); however, the overall effect of the intervention was weak with a Tau-U of 0.48 for the initial group and 0.53 for the replication group. SLPs can begin to develop skills in designing CL activities for children who utilise AAC as a means to support participation and foster social interaction. Future research is necessary to design efficient and effective online training for SLPs.
DOI: 10.60656/6c1c2655032048c1
title: Custom collection of ice water content data from Bucharest, Chilbolton, Galați, Granada, Hyytiälä, and 8 other sites on 6 Aug 2023
DOI: 10.5284/1124491
title: Images from Building Survey at 131 High Street, Oxford, 2021-2023

description: This collection comprises of site photographs from a building survey undertaken by Oxford Archaeology South between May 2021 and July 2023.
DOI: 10.5281/zenodo.14224711
title: ДИЭТИЛАМИНФОСФАТ ОЛИШ ЖАРАЁНИНИГА ТУРЛИ ПАРАМЕТРЛАР ТАЪСИРИНИ  ЎРГАНИШ
DOI: 10.5281/zenodo.14224712
title: ДИЭТИЛАМИНФОСФАТ ОЛИШ ЖАРАЁНИНИГА ТУРЛИ ПАРАМЕТРЛАР ТАЪСИРИНИ  ЎРГАНИШ
DOI: 10.18419/darus-4048
title: Replication Data of Kästner group for: "Chirality Transfer of Stereogenic Boron Centers Enabled by a SN2-Type Mechanism"

description: In this dataset, all optimized geometries from the calculations are listed. The files are given in xyz-format.
DOI: 10.15480/882.13734
title: Experimental results from multiaxial buckling tests on cylindrical CFRP shells with R/t-ratio of 375

description: The buckling failure of cylindrical CFRP shells in combined load cases is only considered in very few experimental studies, despite combined loading occurring frequently in both aerospace and civil applications. Hence, validation and verification of numerical models for these scenarios is challenging. In order to support the validation of FE models and possibly enable the development of new design approaches, the thoroughly documented results of a large number of buckling tests with CFRP shells in multiaxial loading are provided herein. The extensive experimental campaigns on the buckling of cylindrical CFRP shells in multiaxial load cases were conducted on a set of nominally identical specimens. These shells were manufactured at the Institute of Composite Structures and Adaptive Systems of DLR in Braunschweig and have been tested in a previous campaign in pure axial compression. In this study, various combined load cases comprised of axial compression and bending, axial compression and torsion, as well as combinations of all three buckling inducing load types were investigated. This publication contains a separate sheet for each considered shell, listing for all individual tests the achieved buckling loads and the loading imperfections determined from measurement data as well as the mean values and standard deviation of these data for each test point.
DOI: 10.6084/m9.figshare.26765020
title: Studies of the Mechanically Induced Reactivity of Graphene with Water Using a 2D-Materials Strain Reactor

description: The optical images, instrument schematics, Raman point spectra, and reaction energy landscapes presented throughout this paper for the discussion of the mechanochemical hydrolysis of water on a single-layer graphene surface under strain are available as high resolution files (.tiff). Excel spreadsheets (.xlsx) relay the processed spectral data from the raw data .wip files (software for Witec Project analysis software). Raw data for computational analysis are included in the so-named zip file. Spectral data were processed using OriginPro with all Raman spectra normalized to the Raman G peak.
DOI: 10.6073/pasta/8c5b7989c216340ec06b70e238a9085e
title: Understory percent cover, plant traits, canopy LAI, PAR, temperature, and soil moisture data at multiple time points for sites in the burn chronosequence and Indian Point forest at the University of Michigan Biological Station, Pellston, MI (2022-2023)

description: Community ecology has sought to understand the mechanisms by which plant communities are assembled through time and space. One prominent way to address how communities are assembled is by quantifying functional traits. While there is a tremendous body of literature on functional traits, debate persists about how to account for variation in measured traits. For example, intraspecific trait variation (ITV) can be equal to or greater than interspecific trait variation and ITV has also been found to vary greatly across years. Therefore, there is a need to account for variability in functional trait measures among and within species and through time to improve our understanding of community assembly. Chronosequences are a powerful tool to address temporal changes in community dynamics, however, the inclusion of understory plants in forest chronosequence studies is still relatively uncommon. Previous chronosequence studies have been primarily performed in grasslands or in a limited subset of forest types, so further work is needed in understory plant traits across other ecosystems and climates to improve trait-based understanding of understory plant communities through time. Additionally, because plant traits change as ecosystems age, community interactions are likely to change with ecosystem age. Interactions of particular interest are herbivory, arthropod predation, and the influence of plant traits on arthropod diversity.
DOI: 10.60656/cef5a2a6fb704e75
title: Custom collection of ice water content data from Bucharest, Chilbolton, Galați, Granada, Hyytiälä, and 8 other sites on 7 Aug 2023
DOI: 10.5281/zenodo.14224719
title: Dataset for Operational considerations for approximating molecular assembly by Fourier transform mass spectrometry

description: Dataset to accompany paper in Frontiers in Astronomy and Space Sciences entitled, "Operational considerations for approximating molecular assembly by Fourier transform mass spectrometry." doi: 10.3389/fspas.2024.1485483
DOI: 10.5281/zenodo.14224720
title: Dataset for Operational considerations for approximating molecular assembly by Fourier transform mass spectrometry

description: Dataset to accompany paper in Frontiers in Astronomy and Space Sciences entitled, "Operational considerations for approximating molecular assembly by Fourier transform mass spectrometry." doi: 10.3389/fspas.2024.1485483
DOI: 10.5281/zenodo.14224434
title: Wang et al. (2024) submitted for GJI

description: Wang et al. (2024) submitted for GJI
DOI: 10.5281/zenodo.14224435
title: Wang et al. (2024) submitted for GJI

description: Wang et al. (2024) submitted for GJI
DOI: 10.6084/m9.figshare.27855213
title: TC1027 - Programming for Business

description: Code for United Airline dataset view and exploration on a Web Browser
DOI: 10.6084/m9.figshare.27855213.v2
title: TC1027 - Programming for Business

description: Code for United Airline dataset view and exploration on a Web Browser
DOI: 10.6084/m9.figshare.27855213.v1
title: TC1027 - Programming for Business

description: Code for United Airline dataset view and exploration on a Web Browser
DOI: 10.5281/zenodo.14224787
title: MODERN METHODS FOR TREATING PERIODONTITIS
DOI: 10.5281/zenodo.14224788
title: MODERN METHODS FOR TREATING PERIODONTITIS
DOI: 10.57745/o208uz
title: counts_per_sample_18S.tab

description: Table of amplicon sequencing data for 18S rRNA genes. Fungal data. Originally obtained in https://doi.org/10.1371/journal.pone.0130672
DOI: 10.57745/rgznio
title: ref_taxo_genus_16S_corrected.tab

description: Manually corrected taxonomy for 16S rRNA gene data, to allow comparison with metagenomic dataset.
DOI: 10.57745/rrgatb
title: ref_taxo_genus_18S_corected.tab

description: Manually corrected taxonomy for 18S rRNA gene data, to allow comparison with metagenomic dataset.
DOI: 10.57745/skt6u5
title: FONCTIOMIC_taxonomy_sample_metadata.tab

description: Metadata describing the samples of the metagenomic study..
DOI: 10.57745/thad92
title: manual_taxonomy_replacement.txt

description: Manually corrected taxonomy for metagenomic data. Includes replacement of NA values for phyla by other placeholder taxonomic ranks.
DOI: 10.57745/yte0tr
title: counts_per_sample_16S.tab

description: Table of amplicon sequencing data for 16S rRNA genes. Bacterial and archaeal data. Originally obtained in https://doi.org/10.1371/journal.pone.0130672
DOI: 10.57745/yuhgba
title: FONCTIOMIC_taxo_physeq.rds

description: Phyloseq object containing taxonomic data for each sample. It contains counts of each taxon found by Kaiju, a detailed taxonomy for each taxon, and the metadata of the samples.
DOI: 10.57745/hm4wwl
title: Generated analysis report

description: Supplementary material for complete analysis. Complete report with bioinformatic and statistical analyses used for this study.
DOI: 10.57745/zddtqp
title: FONCTIOMIC_taxonomic_analyses_article.Rmd

description: RMarkdown analysis file.
DOI: 10.57745/fbthlf
title: kaiju_domains.png

description: Domain-level taxonomic assignation of reads by sample. Produced with Kaiju.
DOI: 10.57745/rdzmsi
title: cooccurrence_networks_category_Connectance.png

description: Cooccurrence networks connectance.
DOI: 10.57745/1ypfu3
title: cooccurrence_networks_category_nb_links.png

description: Cooccurrence networks total number of links.
DOI: 10.57745/35c651
title: cooccurrence_networks_category_ratio_links.png

description: Cooccurrence networks positive on negative links.
DOI: 10.57745/nz3oxr
title: workflow_FONCTIOMIC_taxo.drawio.png

description: Study bioinformatic and analysis workflow.
DOI: 10.5281/zenodo.14224120
title: Self-Assembled Proteomimetic (SAP) with Antibody-like Binding from Short PNA-Peptide Conjugates

description: Affinity proteins based on a three-helix bundle (affibodies, alphabodies and computationally de novo designed ones) have shown to be a general platform to discover binders with properties reminiscent of antibodies, combining high target specificity with affinities reaching well below the nanomolar. Herein, we report a new strategy, coined self-assembled proteomimetic (SAP), to mimic such three-helix bundle architecture with a hybridization-enforced two-helix coiled coil that is obtained by templated native chemical ligation (T-NCL) of PNA-peptide conjugates. This SAP strategy stands out by its synthetic accessibility reducing the length on the longest synthetic peptide to less than 30 amino acids, readily attainable by standard SPPS methodologies. We show that the T-NCL dramatically accelerates the ligation, enabling this chemistry to proceed in a combinatorial fashion at low micromolar concentrations. We demonstrate that small combinatorial libraries of SAPs can be prepared in one operation and used directly in affinity selections against a target of interest with an LC-MS analysis of the fittest binders. Moreover, we show that the underlying design paradigm is functional for SAPs based on structurally distinct three-helix peptides aimed at different therapeutic targets, namely HER2 and spike’s RBD, reaching picomolar affinities. We further illustrate that the affinity of the SAP can be allosterically regulated using a toehold displacement of the hybridizing PNAs to disrupt the coiled coil stabilization. Finally, we show that an RBD-targeting SAP effectively inhibits viral entry of SARS-CoV-2 with an IC50 of 2.8 nM.
DOI: 10.5281/zenodo.14224121
title: Self-Assembled Proteomimetic (SAP) with Antibody-like Binding from Short PNA-Peptide Conjugates

description: Affinity proteins based on a three-helix bundle (affibodies, alphabodies and computationally de novo designed ones) have shown to be a general platform to discover binders with properties reminiscent of antibodies, combining high target specificity with affinities reaching well below the nanomolar. Herein, we report a new strategy, coined self-assembled proteomimetic (SAP), to mimic such three-helix bundle architecture with a hybridization-enforced two-helix coiled coil that is obtained by templated native chemical ligation (T-NCL) of PNA-peptide conjugates. This SAP strategy stands out by its synthetic accessibility reducing the length on the longest synthetic peptide to less than 30 amino acids, readily attainable by standard SPPS methodologies. We show that the T-NCL dramatically accelerates the ligation, enabling this chemistry to proceed in a combinatorial fashion at low micromolar concentrations. We demonstrate that small combinatorial libraries of SAPs can be prepared in one operation and used directly in affinity selections against a target of interest with an LC-MS analysis of the fittest binders. Moreover, we show that the underlying design paradigm is functional for SAPs based on structurally distinct three-helix peptides aimed at different therapeutic targets, namely HER2 and spike’s RBD, reaching picomolar affinities. We further illustrate that the affinity of the SAP can be allosterically regulated using a toehold displacement of the hybridizing PNAs to disrupt the coiled coil stabilization. Finally, we show that an RBD-targeting SAP effectively inhibits viral entry of SARS-CoV-2 with an IC50 of 2.8 nM.
DOI: 10.5517/ccdc.csd.cc2jww0b
title: CCDC 2350482: Experimental Crystal Structure Determination

description: Related Article: Sebastian Notz, Karoline Müller, Rico Thomas, Tobias Rüffer, Heinrich Lang|2024|Inorg.Chem.Commun.|167|112765|doi:10.1016/j.inoche.2024.112765
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.7916/bb8j-pm63
title:  Time-Dependent Material Properties and Composition of the Nonhuman Primate Uterine Layers Through Gestation: Supplementary Data
DOI: 10.17632/nccxjtym4f.1
title: Inadequate housing and its threat to health: A comprehensive analysis of indicators and consequences

description: Inadequate housing and its threat to health: A comprehensive analysis of indicators and consequences