cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13079180
title: Supplementary Material for: Nephrometry Scores: Can Preoperative Assessment of Sectional Imaging Really Mirror Intraoperative Renal Tumor Anatomy?

description: <b><i>Introduction:</i></b> To compare RENAL, preoperative aspects and dimensions used for an anatomical (PADUA) classification, and Mayo Adhesive Probability (MAP) scores with the respective intraoperative findings and surgeon’s assessment in predicting surgical outcome of patients undergoing partial nephrectomy. <b><i>Methods:</i></b> Data of 150 eligible patients treated at the University Medical Center Mannheim between 2016 and 2018 were analyzed. Tumors were radiologically and intraoperatively assessed by PADUA, RENAL, and MAP scores and surgeon’s assessment. Correlations and regression models were created to predict ischemia time (IT), major complications, and Trifecta (negative surgical margin, IT &lt; 25 min, and absence of major complications). <b><i>Results:</i></b> There were strong correlations between radiological and intraoperative RENAL (<i>r</i> = 0.68; <i>p</i> &lt; 0.001) and PADUA scores (<i>r</i> = 0.72; <i>p</i> &lt; 0.001). Radiological RENAL, PADUA, and MAP scores and surgeon’s assessment were independent predictors of Trifecta (OR = 0.71, <i>p</i> = 0.015; OR = 0.77, <i>p</i> = 0.035; OR = 0.65, <i>p</i> = 0.012; OR = 0.40, <i>p</i> = 0.005, respectively). IT showed significant associations with radiological RENAL, PADUA, and surgeon’s assessment (OR = 1.41, <i>p</i> = 0.033; OR = 1.34, <i>p</i> = 0.044; OR = 3.04, <i>p</i> = 0.003, respectively). MAP score proved as only independent predictor of major complications (OR = 2.12, <i>p</i> = 0.002). <b><i>Conclusion:</i></b> Radiologically and intraoperatively assessed scores correlated well with each other. Intraoperative nephrometry did not outperform radiological scores in predicting outcome confirming the value of the existing systems. MAP score correlates well with surgeon’s assessment of perirenal fat and major complications underlining the importance of perirenal fat characteristics.
DOI: 10.6084/m9.figshare.13079180.v1
title: Supplementary Material for: Nephrometry Scores: Can Preoperative Assessment of Sectional Imaging Really Mirror Intraoperative Renal Tumor Anatomy?

description: <b><i>Introduction:</i></b> To compare RENAL, preoperative aspects and dimensions used for an anatomical (PADUA) classification, and Mayo Adhesive Probability (MAP) scores with the respective intraoperative findings and surgeon’s assessment in predicting surgical outcome of patients undergoing partial nephrectomy. <b><i>Methods:</i></b> Data of 150 eligible patients treated at the University Medical Center Mannheim between 2016 and 2018 were analyzed. Tumors were radiologically and intraoperatively assessed by PADUA, RENAL, and MAP scores and surgeon’s assessment. Correlations and regression models were created to predict ischemia time (IT), major complications, and Trifecta (negative surgical margin, IT &lt; 25 min, and absence of major complications). <b><i>Results:</i></b> There were strong correlations between radiological and intraoperative RENAL (<i>r</i> = 0.68; <i>p</i> &lt; 0.001) and PADUA scores (<i>r</i> = 0.72; <i>p</i> &lt; 0.001). Radiological RENAL, PADUA, and MAP scores and surgeon’s assessment were independent predictors of Trifecta (OR = 0.71, <i>p</i> = 0.015; OR = 0.77, <i>p</i> = 0.035; OR = 0.65, <i>p</i> = 0.012; OR = 0.40, <i>p</i> = 0.005, respectively). IT showed significant associations with radiological RENAL, PADUA, and surgeon’s assessment (OR = 1.41, <i>p</i> = 0.033; OR = 1.34, <i>p</i> = 0.044; OR = 3.04, <i>p</i> = 0.003, respectively). MAP score proved as only independent predictor of major complications (OR = 2.12, <i>p</i> = 0.002). <b><i>Conclusion:</i></b> Radiologically and intraoperatively assessed scores correlated well with each other. Intraoperative nephrometry did not outperform radiological scores in predicting outcome confirming the value of the existing systems. MAP score correlates well with surgeon’s assessment of perirenal fat and major complications underlining the importance of perirenal fat characteristics.
DOI: 10.5258/soton/d1580
title: Dataset for: "Falling leaves return to their roots": familiesâ experiences of decision-making when transferring patients home to die from an intensive care unit in China

description: Dataset supports the PhD thesis "Falling leaves return to their roots": families’ experiences of decision-making when transferring patients home to die from an intensive care unit in China Data (interview transcripts written in Chinese) are available on request to bona fide researchers with ethics clearance. Please complete the request form found at http://library.soton.ac.uk/datarequest (link below)
DOI: 10.6084/m9.figshare.13079177
title: data.txt

description: Each row represents a sample; the first column represents the sample number; the last column represents the contact stress; the middle part is the feature size.
DOI: 10.6084/m9.figshare.13079177.v1
title: data.txt

description: Each row represents a sample; the first column represents the sample number; the last column represents the contact stress; the middle part is the feature size.
DOI: 10.5281/zenodo.4081388
title: A Survey on the Adoption of Patterns for Engineering Software for the Cloud - Response Dataset

description: This work takes as a starting point a collection of patterns for engineering software for the cloud and tries to find how they are regarded and adopted by professionals. We investigate (1) their relevance for professional software developers, (2) the extent to which product and company characteristics influence their adoption, and (3) how adopting some patterns might correlate with the likelihood of adopting others. For this purpose, we surveyed 102 practitioners using an online questionnaire. Amongst other findings, we conclude that most companies are using these patterns, with the overwhelming majority (97%) using at least one. We observe that the mean pattern adoption tends to increase as companies mature, namely when varying the product operation complexity, active monthly users, and company size. Finally, we establish clear correlations in the adoption of specific pairs of patterns, with conditional probabilities as high as 94%, which hints on how some practices are dependent or influence the adoption of others.
DOI: 10.21227/664d-vt25
title: Model1.2.1

description: Tuning of previos models
DOI: 10.5258/soton/d1577
title: Dataset for: Electronic-Photonic Convergence for Silicon Photonics Transmitters Beyond 100Gbit/s On-Off Keying

description: Data set for the article "Electronic-Photonic Convergence for Silicon Photonics Transmitters Beyond 100Gbit/s On-Off Keying" published in the journal Optica.
DOI: 10.6084/m9.figshare.12431078
title: Table_Physical_function

description: Data from West african HIV patients<br>
DOI: 10.6084/m9.figshare.5104258
title: Data from The importance of individual and species-level traits for trophic niches among herbivorous coral reef fishes.

description: Resolving how species compete and coexist within ecological communities represents a long-standing challenge in ecology. Research efforts have focused on two predominant mechanisms of species coexistence: complementarity and redundancy. But findings also support an alternative hypothesis that within-species variation may be critical for coexistence. Our study focuses on nine closely related and ecologically similar coral reef fish species to test the importance of individual- versus species-level traits in determining the size of dietary, foraging substrate, and behavioural interaction niches. Specifically, we asked: (i) What level of biological organization best describes individual-level niches? (ii) How are herbivore community niches partitioned among species, and are niche widths driven by species- or individual-level traits? Dietary and foraging substrate niche widths were best described by species identity, but no level of taxonomy explained behavioural interactions. All three niches were dominated by only a few species, contrasting expectations of niche complementarity. Species- and individual-level traits strongly drove foraging substrate and behavioural niches, respectively, whereas the dietary niche was described by both. Our findings underscored the importance of species-level traits for community-level niches, but highlight that individual-level trait variation within a select few species may be a key driver of the overall size of niches.
DOI: 10.6084/m9.figshare.5104258.v2
title: Data from The importance of individual and species-level traits for trophic niches among herbivorous coral reef fishes.

description: Resolving how species compete and coexist within ecological communities represents a long-standing challenge in ecology. Research efforts have focused on two predominant mechanisms of species coexistence: complementarity and redundancy. But findings also support an alternative hypothesis that within-species variation may be critical for coexistence. Our study focuses on nine closely related and ecologically similar coral reef fish species to test the importance of individual- versus species-level traits in determining the size of dietary, foraging substrate, and behavioural interaction niches. Specifically, we asked: (i) What level of biological organization best describes individual-level niches? (ii) How are herbivore community niches partitioned among species, and are niche widths driven by species- or individual-level traits? Dietary and foraging substrate niche widths were best described by species identity, but no level of taxonomy explained behavioural interactions. All three niches were dominated by only a few species, contrasting expectations of niche complementarity. Species- and individual-level traits strongly drove foraging substrate and behavioural niches, respectively, whereas the dietary niche was described by both. Our findings underscored the importance of species-level traits for community-level niches, but highlight that individual-level trait variation within a select few species may be a key driver of the overall size of niches.
DOI: 10.6084/m9.figshare.5104258.v1
title: Data from The importance of individual and species-level traits for trophic niches among herbivorous coral reef fishes

description: Resolving how species compete and coexist within ecological communities represents a long-standing challenge in ecology. Research efforts have focused on two predominant mechanisms of species coexistence: complementarity and redundancy. But findings also support an alternative hypothesis that within-species variation may be critical for coexistence. Our study focuses on nine closely related and ecologically similar coral reef fish species to test the importance of individual- versus species-level traits in determining the size of dietary, foraging substrate, and behavioural interaction niches. Specifically, we asked: (i) What level of biological organization best describes individual-level niches? (ii) How are herbivore community niches partitioned among species, and are niche widths driven by species- or individual-level traits? Dietary and foraging substrate niche widths were best described by species identity, but no level of taxonomy explained behavioural interactions. All three niches were dominated by only a few species, contrasting expectations of niche complementarity. Species- and individual-level traits strongly drove foraging substrate and behavioural niches, respectively, whereas the dietary niche was described by both. Our findings underscored the importance of species-level traits for community-level niches, but highlight that individual-level trait variation within a select few species may be a key driver of the overall size of niches.
DOI: 10.25573/data.10059536.v7
title: Monthly summary_Parque Natural Metropolitano Crane

description: Monthly and daily summaries from Parque Natural Metropolitano (PNM) crane station. <br>Location: 8.994410°, - 79.543000°<br>Parameters: air temperature, relative humidity, wind speed and direction, precipitation, solar radiation (pyranometer)<br>Established in 1995, the PNM canopy crane is located at the North Western edge of Panama City, at the eastern edge of the Parque Natural Metropolitano (Metropolitan Nature Park) and is surrounded by 80-year old, lowland semi-deciduous forest. The crane is 42 meters tall. <br><br>The original station was located on the side of the tower at approximately 25m. Some sensors were later moved to the top of the tower.
DOI: 10.25573/data.10059530.v8
title: Monthly summary_Galeta Station

description: Monthly and daily summary from Galeta Island marine laboratory<br>Location: 9.402742°, -79.860837°<br>Parameters: air temperature, relative humidity, wind speed and direction, precipitation, sea surface temperature, solar radiation (pyranometer)<br><br>Galeta Island Marine Laboratory physical monitoring station established in 1974<br>Galeta station is located 6 km North East of the city of Colon. Established in the 1960’s.
DOI: 10.17632/hj3wg6s7yd.3
title: The Role of Redox on Bridgmanite Crystal Chemistry and Calcium Speciation in the Lower Mantle: Supporting Information

description: Authors: Neala Creasy1,2*, Jennifer Girard1, James Eckert1, and Kanani K. M. Lee1,3 1Department of Geology and Geophysics, Yale University, New Haven, CT, USA, 2Department of Geophysics, Colorado School of Mines, Golden, CO, USA, 3Lawrence Livermore National Laboratory, Livermore, CA, USA Corresponding author: Neala Creasy (nmcreasy@mines.edu) *Additional Supporting Information (Files uploaded separately in Mendeley data repository) Tables S1-S5 as .xlsx file Raw .tif files for all data used in this study Integrated .chi files for all data Integrated CeO2 .chi files for calibration of XRD data In this supporting information document, we include a wide variety of raw data tables, additional analysis, assumptions made in our modeling, and our Monte Carlo results: • Raw data for Mossbauer and starting materials; • Methods and raw EPMA results of our samples post-experiment; • Equations of state calculated for each phase identified and measured; • Rietveld refinements of two chosen x-ray diffraction patterns; • Our Monte Carlo methods, assumptions, and results; • Raw XRD data and integrated files Abstract: The amount of ferric iron Fe3+ in the lower mantle is largely unknown and could be influenced by the disproportionation reaction of ferrous iron Fe2+ into metallic Fe and Fe3+ triggered by the formation of bridgmanite. Recent work has shown that Fe3+ has a strong effect on the density and seismic wave speeds of bridgmanite and the incorporation of impurities such as aluminum. In order to further investigate the effects of ferric iron on mineral behavior at lower mantle conditions, we conducted laser-heated diamond-anvil cell (LHDAC) experiments on two sets of samples nearly identical in composition (an aluminum-rich pyroxenite glass) except for the Fe3+ content; with one sample with more Fe3+ (“oxidized”: Fe3+/ΣFe ~ 55%) and the other with less Fe3+ (“reduced”: Fe3+/ΣFe ~11%). We heated the samples to lower mantle conditions, and the resulting assemblages were drastically different between the two sets of samples. For the reduced composition, we observed a multiphase assemblage dominated by bridgmanite and calcium perovskite. In contrast, the oxidized material yielded a single phase of Ca-bearing bridgmanite. These Al-rich pyroxenite samples show a difference in density and seismic velocities for these two redox states, where the reduced assemblage is denser than the oxidized assemblage by ~1.5 % at the bottom of the lower mantle and slower (bulk sound speed) by ~2%. Thus, heterogeneities of Fe3+ content may lead to density and seismic wave speed heterogeneities in the Earth’s lower mantle.
DOI: 10.25573/data.10059518.v8
title: Monthly summary_San Lorenzo Crane

description: Monthly and daily summaires from the San Lorenzo (Formerly know as Fort Sherman) Canopy Access Crane. <br><br>Parameters: air temperature, relative humidity, wind speed and direction, precipitation, solar radiation (pyranometer)<br>Established in 1997, the San Lorenzo canopy crane (9.281031°, -79.974518°) is located approximately 11 km South West from the city of Colon, in the middle the Parque Natural San Lorenzo (formerly known as Fort Sherman) and is surrounded by 300-year old, low-land tropical rainforest
DOI: 10.17632/b3z32xsk9z.2
title: Supplementary: Cosmetic Procedure Use as a Type of Substance-Related Disorder

description: Supplementary figures and tables to "Cosmetic Procedure Use as a Type of Substance-Related Disorder" published in the Journal of American Academy of Dermatology.
DOI: 10.25573/data.10059476.v6
title: Monthly summary_Fortuna Station

description: Monthly and daily summary from the Fortuna Station (Centro de Investigaciones Jorge L. Arauz)<br>Location: 8° 43.340'N, 82° 14.241'W<br>Parameters: air temperature, wind speed and direction, precipitation, solar radiation (pyranometer)<br>Located in the highlands of the Chiriqui Province, in western Panama.There are three sensor locations: north clearing, south clearing, and a 15m tower.<br>
DOI: 10.17632/hzbrzdkcfr.1
title: Three-dimensional human alveolar stem cell culture models reveal infection response to SARS-CoV-2

description: The research developed human 3D alveolar culture which can be used to study SARS-CoV-2's infection mechanism. In short, We builtㅣlong-term, 3D culture models of hAT2 cells derived from primary human lung tissues in chemically defined culture condition . hAT2 cells are permissive to SARS-CoV-2 infection. Single cell RNA sequencing identififes immune proficient and deficienct populations of infected hAT2 cells. One SARS-CoV2 virus particle sufficiently infects a hAT2 cell from viral mutation. Supple_information is supplemental figures with legends. For figure S1, establishment and characterization of three-dimensional culture of human airway and alveolar type 2 cells. Figure S2 is Lactate dehydrogenase cytotoxicity assay of human 3D alveolar cultures and Vero cells Figure S3 is confocal imaging analysis of infected h3ACs. Figure S4 is transmission electron microscopy imaging of uninfected h3ACs. Figure S5 is transcriptome changes of the infected h3ACs. Figure S6 is single cell transcriptome profiling of infected h3ACs. Table S6 is clinical characteristics of tissue donors. Table S7 is list of quantitative PCR primers. Key_resource_table is the list of all reagents used in this study Supplemental tables is largely divided into 4 categories. Table S1 and S3 TPM of h3AC, h3BC are the RNA sequencing TPM results of infected and uninfected h3AC and h3BC. Table S2. is List of differentially upregulated genes in SARS-CoV-2 infected human lung, h3AC, Vero cell line, Calu-3 cell line, and Caco-2 cell lines. Table S4. is Single base substitution list is made from RNA sequencing of h3AC and h3BC. Table S5 is DEGs were also made from single cell RNA sequencing.
DOI: 10.5258/soton/d0129
title: Dataset to support Noise reduction for ballasted track: a comparative socio-economic assessment

description: This dataset supports the publication: Armstrong, J., Ortega, A., Blainey, S., Preston, J., Thompson, D., Squicciarini, G., & Ntotsios, E. (2019). Noise reduction for ballasted track: a comparative socio-economic assessment. International Journal of Transport Development and Integration, 3(1), 15-29. https://doi.org/10.2495/tdi-v3-n1-15-29
DOI: 10.17632/cjbw66w27k.1
title: Data for: Simulating water turbidity in a macro-tidal coastal bay using machine learning approaches

description: The observed hourly time series are averaged in 94 tidal cycles from 2012-12-7 18:00 to 2013-1-24 23:00. This dataset contains the HW time of each tidal cycle, the averaged tidal range, the tidal averages of significant wave height, wave peak period, and turbidity, and the subset decided by data splitting. Details can be found in "3. Methods".
DOI: 10.17632/57tsgms9d8.1
title: SWOO3D

description: RTTOV_SHDOM.nc: data used to reproduce Figure 2. OUTPUT.tar.gz: data used to reproduce Figures 3 and 4. The file stores the reflectance simulated by SHDOM-1D, SHDOM-3D, and SWOO3D for the trainning, validation, and testing datasets. CASE.tar.gz: data used to reproduce Figure 5.
DOI: 10.25573/data.10059470.v8
title: Monthly summary_Culebra Station Tower

description: Punta Culebra Nature Center meteorological station. Established in 2002. <br>Location: 8.910718°N, -79.528919°<br>Parameters: air temperature, relative humidity, wind speed and direction, precipitation, solar radiation (pyranometer)
DOI: 10.17632/ppgtvd9wsz.1
title: Data for "Inter-basin water transfer matters for water-use technical efficiency"

description: Inter-basin water transfer matters for water-use technical efficiency. The database contains the data used to estimate the water-use technical efficiency, do-file and data for DID estimation, and do-file for placebo testing.
DOI: 10.25573/data.10059467.v8
title: Monthly summary_Agua Salud, Celestino Tower

description: Monthly and daily summaries from the Agua Salud Celestino Tower. <br>Location 9.21142N, 79.72656W<br>Parameters: air temperature, relative humidity, wind speed and direction, precipitation, solar radiation (pyranometer, photosynthetically active radiation), soil moisture, net radiation, air pressure, evapotranspiration<br><br>Established in 2015 and is located at the eastern edge of the Soberania Nation Park, in an area of pastures and forest patches. The tower is 40ft (12.2m) tall
DOI: 10.17632/kvkhy52w2t.1
title: LINF_010007900

description: hypothetical protein - conserved
DOI: 10.25573/data.10059464.v8
title: Monthly summary_Bocas Station

description: Monthly and daily summary from the Bocas del Toro Research StationLocation: 9.351553°, -82.256565°<br>Parameters: air temperature, relative humidity, wind speed and direction, precipitation, sea surface temperature, solar radiation (pyranometer), air pressure, dissolved oxygen, turbidity, salinity, pH<br><br>Sensors located on a platform located approximately 60m from the end of the station’s dock. Platform includes meteorological tower, Sea Surface Temperature probe and several sea level sensors. The current platform was built in 2012 to replace the original platform.
DOI: 10.17632/h3c5bbkp5m.1
title: LINF_010008000

description: acidocalcisomal exopolyphosphatase
DOI: 10.17632/2rwrg2nv5d.1
title: LINF_010008100

description: hypothetical protein - conserved
DOI: 10.17632/tmpkt2mfkg.2
title: Q-CHAT scores of Polish toddlers with autism spectrum disorders and typically developing controls

description: The Q-CHAT (Allison, C., Baron-Cohen, S., Wheelwright, S., Charman, T., Richler, J., Pasco, G., & Brayne, C., 2008) is a parent-report screening tool for autism spectrum disorders (ASD) for children aged 18 to 24 months. Parents score each of the 25 items on a scale from 0 to 4, with higher scores indicating atypical behavior symptomatic of ASD. Please refer to the paper by Allison et al. (2008) for detailed information about the instrument and scoring procedures. This database contains Q-CHAT item scores and basic socio-demographic information about 252 Polish toddlers: 135 with a community-based diagnosis of autism spectrum disorders (ASD) and 118 typically developing toddlers. Previous studies with British (Allison et al., 2008; Allison, C., Auyeung, B., & Baron-Cohen, S., 2012) and Singaporean (Magiati et al., 2015) participants demonstrated that the Q-CHAT was an efficient screening tool. Our study aimed to determine whether the Q-CHAT could be used as a screening tool for autism spectrum disorders in Poland. Preliminary results were presented in a manuscript which is currently under review. The authors would like to thank the SYNAPSIS Foundation and all partners of the Early Identification of Autism Programme “Badabada”, PSONI Center for Early Intervention in Warsaw, The Autistic People Help Association “Together forward”, JiM Foundation, Polish National Autism Society and Anna Banasiak, Majka Niedzielska, and Julia Borejsza for their help in the collection of data. Dataset 2 included a corrected entry for one participant.