cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9825617
title: Raw data.xlsx

description: Adipose-derived mesenchymal stem cell (ADSC)-based regenerative therapies have shown potential for use in many chronic diseases. Aging diminishes stem cell regenerative potential, yet it is unknown whether stem cells from aged donors cause adverse effects in recipients. ADSCs can be obtained using minimally invasive approaches and possess low immunogenicity. Nevertheless, we found that transplanting ADSCs from old donors, but not those from young donors, induces physical dysfunction in older recipient mice. Using single cell transcriptomic analysis, we identified a naturally occurring senescent cell population in ADSCs primarily from old donors that resembles <i>in vitro</i>-generated senescent cells with regard to a number of key pathways. Our study reveals a previously unrecognized health concern due to ADSCs from old donors and lays the foundation for a new avenue of research to devise interventions to reduce harmful effects of ADSCs from old donors.
DOI: 10.6084/m9.figshare.9825680.v2
title: Metadata record for: A database for using machine learning and data mining techniques for coronary artery disease diagnosis

description: This dataset contains key characteristics about the data described in the Data Descriptor A database for using machine learning and data mining techniques for coronary artery disease diagnosis. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format<br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.
DOI: 10.6084/m9.figshare.9825617.v1
title: Raw data.xlsx

description: Adipose-derived mesenchymal stem cell (ADSC)-based regenerative therapies have shown potential for use in many chronic diseases. Aging diminishes stem cell regenerative potential, yet it is unknown whether stem cells from aged donors cause adverse effects in recipients. ADSCs can be obtained using minimally invasive approaches and possess low immunogenicity. Nevertheless, we found that transplanting ADSCs from old donors, but not those from young donors, induces physical dysfunction in older recipient mice. Using single cell transcriptomic analysis, we identified a naturally occurring senescent cell population in ADSCs primarily from old donors that resembles <i>in vitro</i>-generated senescent cells with regard to a number of key pathways. Our study reveals a previously unrecognized health concern due to ADSCs from old donors and lays the foundation for a new avenue of research to devise interventions to reduce harmful effects of ADSCs from old donors.
DOI: 10.6084/m9.figshare.9825680.v1
title: Metadata record for: A database for using machine learning and data mining techniques for coronary artery disease diagnosis

description: This dataset contains key characteristics about the data described in the Data Descriptor A database for using machine learning and data mining techniques for coronary artery disease diagnosis. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <b>----------------------------------------------------------------</b> <b>Please remove before publishing.</b> <br> <b>manuscript number:</b><br>SDATA-19-00214B <b>edit url: </b><br>https://scientificdata.metadata-creator.com/?id=ag5maWdtZXRhLTIzMDExMXIXCxIKU3VibWlzc2lvbhiAgIDg2o2ACgw<br> <b>Related publications:</b> - <b>Please remove before publishing.</b> <b>----------------------------------------------------------------</b>
DOI: 10.6084/m9.figshare.9825068
title: Killifish lab diet

description: table with raw data
DOI: 10.6084/m9.figshare.9825068.v1
title: Killifish lab diet

description: table with raw data
DOI: 10.6084/m9.figshare.9824774
title: SNPs reaching at least suggestive significance in either meta-analysis track

description: SNPs reaching at least suggestive significance (<i>p</i> = 5 x 10<sup>-7</sup>) in either META<sub>US</sub> or META<sub>UK</sub> tracks. For each SNP, these tables contain typical location and allele information, the minor allele frequency in the US and the UK data, the canonical correlation value in the META<sub>US</sub> and META<sub>UK</sub> tracks and the meta-analysis p-value for the META<sub>US</sub> and META<sub>UK</sub> tracks.
DOI: 10.6084/m9.figshare.9824774.v2
title: SNPs reaching at least suggestive significance in either meta-analysis track

description: SNPs reaching at least suggestive significance (<i>p</i> = 5 x 10<sup>-7</sup>) in either META<sub>US</sub> or META<sub>UK</sub> tracks. For each SNP, these tables contain typical location and allele information, the minor allele frequency in the US and the UK data, the canonical correlation value in the META<sub>US</sub> and META<sub>UK</sub> tracks and the meta-analysis p-value for the META<sub>US</sub> and META<sub>UK</sub> tracks.
DOI: 10.6084/m9.figshare.9825071.v2
title: Association statistics and effects of 203 lead SNPs

description: For each SNP, the mat file contains the RSID, chromosome and hg19 position, canonical correlation values, CCA coefficients, meta-analysis p-values, degrees of freedom, the p-value from the CCA step, and the p-value from the regression of slopes. Values from the US-driven meta-analysis are in the first column and values from the UK-driven meta-analysis are in the second column. <br><br>For each SNP, the pdf file contains: (A) -log<sub>10</sub>(p-value) of the meta-analysis p-values per facial segment in META<sub>US</sub> and META<sub>UK</sub>. Black-encircled facial segments have reached a genome-wide p-value (p &lt;= 5 x 10<sup>-8</sup>). (B) The normal displacement (displacement in the direction locally normal to the facial surface) in each quasi-landmark of the facial segment reaching the lowest p-value in META<sub>US</sub> and META<sub>UK </sub>going from the minor to the major allele SNP variant. Blue: inward depression; Red: outward protrusion. (C) LocusZoom plots in META<sub>US</sub> (top) and META<sub>UK</sub> (bottom). Points are color-coded based on linkage disequilibrium (r<sup>2</sup>) in the 1000G Phase 3 EUR super-population. Asterisks represent genotyped SNPs, circles represent imputed SNPs.
DOI: 10.6084/m9.figshare.9824774.v1
title: SNPs reaching at least suggestive significance in either meta-analysis permutation

description: SNPs reaching at least suggestive significance (<i>p</i> = 5 x 10<sup>-7</sup>) in either META<sub>US</sub> or META<sub>UK</sub> permutations. For each SNP, these tables contain typical location and allele information, the minor allele frequency in the US and the UK data, the canonical correlation value in the META<sub>US</sub> and META<sub>UK</sub> permutations and the meta-analysis p-value for the META<sub>US</sub> and META<sub>UK</sub> permutations.
DOI: 10.6084/m9.figshare.9824318
title: Species and functional differences between subalpine grasslands with and without dwarf shrub encroachment

description: Diversity of subalpine semi-natural grasslands is threatened by both overgrazing and abandonment, resulting in degradation and woody plants encroachment, respectively. The effects of overgrazing, followed by a sharp decline of grazing are rarely assessed in uncontrolled conditions. We aimed at assessing plant species and functional diversity within the grass-dwarf shrub mosaic. Species abundance and selected plant functional traits (leaf, height, seed) were assessed within 16 m<sup>2</sup> plots in adjacent grass-dominated and low-cover dwarf shrub vegetation patches. Species-based and functional patterns were quantified by Simpson’s diversity, Rao’s quadratic entropy, the plot weighted mean of plant traits and analysed with NMDS ordination and linear mixed-effect models. Despite the appearance of dwarf shrub canopy effect and light competition, higher species-based and functional diversity were found in the dwarf shrub patch. Our results point to the strong legacy of past overgrazing and the related filtering effects on the trait complex of assembling species, especially in the grass-dominated patches. We conclude that pastures incorporating dwarf shrubs at low cover are favourable in terms of species and functional diversity and recommend the maintaining of intermediate grazing intensity to support mosaic vegetation structures that are beneficial for biodiversity conservation in the study area.
DOI: 10.6084/m9.figshare.9824270
title: skesa_assemblies_344_cryptic_clades.zip

description: This zip file contains SKESA assemblies of 344 cryptic clade strains identified in the SRA
DOI: 10.6084/m9.figshare.9824234
title: list_10824_RefSeq_accessions.txt

description: This list contains RefSeq accession numbers for 10824 Escherichia assemblies that were downloaded from RefSeq
DOI: 10.6084/m9.figshare.9824261
title: list_79911_SRA_accessions.txt

description: This list contains SRA accession numbers for 79911 Escherichia isolates deposited in the SRA that could be succesfully assembled
DOI: 10.6084/m9.figshare.9824261.v1
title: list_79911_SRA_accessions.txt

description: This list contains SRA accession numbers for 79911 Escherichia isolates deposited in the SRA that could be succesfully assembled
DOI: 10.6084/m9.figshare.9824270.v1
title: skesa_assemblies_344_cryptic_clades.zip

description: This zip file contains SKESA assemblies of 344 cryptic clade strains identified in the SRA
DOI: 10.6084/m9.figshare.9824318.v2
title: Species and functional differences between subalpine grasslands with and without dwarf shrub encroachment

description: Diversity of subalpine semi-natural grasslands is threatened by both overgrazing and abandonment, resulting in degradation and woody plants encroachment, respectively. The effects of overgrazing, followed by a sharp decline of grazing are rarely assessed in uncontrolled conditions. We aimed at assessing plant species and functional diversity within the grass-dwarf shrub mosaic. Species abundance and selected plant functional traits (leaf, height, seed) were assessed within 16 m<sup>2</sup> plots in adjacent grass-dominated and low-cover dwarf shrub vegetation patches. Species-based and functional patterns were quantified by Simpson’s diversity, Rao’s quadratic entropy, the plot weighted mean of plant traits and analysed with NMDS ordination and linear mixed-effect models. Despite the appearance of dwarf shrub canopy effect and light competition, higher species-based and functional diversity were found in the dwarf shrub patch. Our results point to the strong legacy of past overgrazing and the related filtering effects on the trait complex of assembling species, especially in the grass-dominated patches. We conclude that pastures incorporating dwarf shrubs at low cover are favourable in terms of species and functional diversity and recommend the maintaining of intermediate grazing intensity to support mosaic vegetation structures that are beneficial for biodiversity conservation in the study area.
DOI: 10.6084/m9.figshare.9824234.v1
title: list_10824_RefSeq_accessions.txt

description: This list contains RefSeq accession numbers for 10824 Escherichia assemblies that were downloaded from RefSeq
DOI: 10.6084/m9.figshare.9824318.v1
title: Species and functional differences between subalpine grasslands with and without dwarf shrub encroachment

description: Diversity of subalpine semi-natural grasslands is threatened by both overgrazing and abandonment, resulting in degradation and woody plants encroachment, respectively. The effects of overgrazing, followed by a sharp decline of grazing are rarely assessed in uncontrolled conditions. We aimed at assessing plant species and functional diversity within the grass-dwarf shrub mosaic. Species abundance and selected plant functional traits (leaf, height, seed) were assessed within 16 m<sup>2</sup> plots in adjacent grass-dominated and low-cover dwarf shrub vegetation patches. Species-based and functional patterns were quantified by Simpson’s diversity, Rao’s quadratic entropy, the plot weighted mean of plant traits and analysed with nonmetric multidimensional scaling ordination and linear mixed-effect models. Despite the appearance of dwarf shrub canopy effect and light competition, higher species-based and functional diversity were found in the dwarf shrub patch. Our results point to the strong legacy of past overgrazing and the related filtering effects on the trait complex of assembling species, especially in the grass-dominated patches. We conclude that pastures incorporating dwarf shrubs at low cover are favourable in terms of species and functional diversity and recommend the maintaining of intermediate grazing intensity to support mosaic vegetation structures that are beneficial for biodiversity conservation in the study area.
DOI: 10.6084/m9.figshare.9823856
title: Anonymous_Appendix_InventionPledges.docx

description: The file contains verbatim citations to IBM Technical Disclosure Bulletin by granted US patents in their description section.
DOI: 10.6084/m9.figshare.9823856.v1
title: Anonymous_Appendix_InventionPledges.docx

description: The file contains verbatim citations to IBM Technical Disclosure Bulletin by granted US patents in their description section.
DOI: 10.6084/m9.figshare.9823709
title: Wood anatomy of dominant species with contrasting ecological performance in tropical dry forest succession

description: Environmental restrictions faced by successional species (those occurring in recovering vegetation) change gradually between early and late succession. In tropical dry forest (TDF), legume species dominate early succession, that is, accumulate more biomass than coexisting species, but later are gradually replaced by late successional species. Stem anatomical traits are involved in water conduction efficiency and safety, and thus biomass accumulation. We hypothesized that anatomical characteristics of dominant species may explain their status in their respective successional community. We analyzed the wood anatomy of TDF dominant successional species: <i>Mimosa eurycarpa</i> and <i>M. tenuiflora</i> (early successional), <i>Lysiloma divaricatum</i> (late successional), and <i>Euphorbia schlechtendalii</i> (successionally ambiguous). Anatomical variables and indices were estimated and compared between species through linear modeling. Unexpectedly, <i>Mimosa</i> species differed in porosity type, which is one characteristic linked to water stress tolerance. <i>M</i>. <i>eurycarpa</i> and <i>L</i>. <i>divaricatum</i> are ring-porous (an uncommon feature in tropical species), whereas <i>M. tenuiflora</i> and <i>E. schlechtendalii</i> displayed diffuse porosity. <i>M</i>. <i>eurycarpa</i> had the lowest vulnerability index (VI) and the highest relative hydraulic conductivity. Within-individual differences in relative water conduction in ring-porous species, driven by high vessel density in earlywood and low VI in latewood, likely represent a highly advantageous strategy in water-stressed successional environments.
DOI: 10.6084/m9.figshare.9823709.v1
title: Wood anatomy of dominant species with contrasting ecological performance in tropical dry forest succession

description: Environmental restrictions faced by successional species (those occurring in recovering vegetation) change gradually between early and late succession. In tropical dry forest (TDF), legume species dominate early succession, that is, accumulate more biomass than coexisting species, but later are gradually replaced by late successional species. Stem anatomical traits are involved in water conduction efficiency and safety, and thus biomass accumulation. We hypothesized that anatomical characteristics of dominant species may explain their status in their respective successional community. We analyzed the wood anatomy of TDF dominant successional species: <i>Mimosa eurycarpa</i> and <i>M. tenuiflora</i> (early successional), <i>Lysiloma divaricatum</i> (late successional), and <i>Euphorbia schlechtendalii</i> (successionally ambiguous). Anatomical variables and indices were estimated and compared between species through linear modeling. Unexpectedly, <i>Mimosa</i> species differed in porosity type, which is one characteristic linked to water stress tolerance. <i>M</i>. <i>eurycarpa</i> and <i>L</i>. <i>divaricatum</i> are ring-porous (an uncommon feature in tropical species), whereas <i>M. tenuiflora</i> and <i>E. schlechtendalii</i> displayed diffuse porosity. <i>M</i>. <i>eurycarpa</i> had the lowest vulnerability index (VI) and the highest relative hydraulic conductivity. Within-individual differences in relative water conduction in ring-porous species, driven by high vessel density in earlywood and low VI in latewood, likely represent a highly advantageous strategy in water-stressed successional environments.
DOI: 10.6084/m9.figshare.9823538
title: Supplementary Table SBK 1. Age and isotope geochemistry of magmatic rocks of the Lohit plutonic complex, eastern Himalaya: Implications for the evolution of Transhimalayan arc magmatism

description: Supplementary Table SBK 1: LA–ICP–MS zircon U–Pb data of the magmatic rocks from Lohit Plutonic Complex, Eastern Himalaya
DOI: 10.6084/m9.figshare.9823535
title: Supplementary Table SBK 2. Age and isotope geochemistry of magmatic rocks of the Lohit plutonic complex, eastern Himalaya: Implications for the evolution of Transhimalayan arc magmatism

description: Supplementary Table SBK 2: LA–MC–ICPMS zircon Hf isotope data of magmatic rocks from Lohit Plutonic Complex, Eastern Himalaya
DOI: 10.6084/m9.figshare.9823538.v1
title: Supplementary Table SBK 1. Age and isotope geochemistry of magmatic rocks of the Lohit plutonic complex, eastern Himalaya: Implications for the evolution of Transhimalayan arc magmatism

description: Supplementary Table SBK 1: LA–ICP–MS zircon U–Pb data of the magmatic rocks from Lohit Plutonic Complex, Eastern Himalaya
DOI: 10.17028/rd.lboro.9822947
title: Supplementary files for 'Solid-liquid axial dispersion performance of a mesoscale continuous oscillatory flow crystalliser with smooth periodic constrictions using a non-invasive dual backlit imaging technique'

description: Supporting data for a publication in Chemical Engineering Journal (2019)<br>Solid-liquid axial dispersion performance of a mesoscale continuous oscillatory flow crystalliser with smooth periodic constrictions using a non-invasive dual backlit imaging technique<br> Iyke. I. Onyemelukwe, Zoltan K. Nagya, Chris. D. Rielly<br>MATLAB® script for image analysis<br>Data tables for axial dispersion coefficients<br><br>
DOI: 10.17028/rd.lboro.9822947.v2
title: Supplementary files for 'Solid-liquid axial dispersion performance of a mesoscale continuous oscillatory flow crystalliser with smooth periodic constrictions using a non-invasive dual backlit imaging technique'

description: Supporting data for a publication in Chemical Engineering Journal (2019)<br>Solid-liquid axial dispersion performance of a mesoscale continuous oscillatory flow crystalliser with smooth periodic constrictions using a non-invasive dual backlit imaging technique<br> Iyke. I. Onyemelukwe, Zoltan K. Nagya, Chris. D. Rielly<br>MATLAB® script for image analysis<br>Data tables for axial dispersion coefficients<br><br>
DOI: 10.17028/rd.lboro.9822947.v1
title: Supplementary files for 'Solid-liquid axial dispersion performance of a mesoscale continuous oscillatory flow crystalliser with smooth periodic constrictions using a non-invasive dual backlit imaging technique'

description: Supporting data for a publication in Chemical Engineering Journal (2019)<br>Solid-liquid axial dispersion performance of a mesoscale continuous oscillatory flow crystalliser with smooth periodic constrictions using a non-invasive dual backlit imaging technique<br> Iyke. I. Onyemelukwe, Zoltan K. Nagya, Chris. D. Rielly<br>MATLAB® script for image analysis<br>Data tables for axial dispersion coefficients<br><br>
DOI: 10.6084/m9.figshare.9822623
title: Metadata record for: Monitored data on occupants' presence and actions in an office building

description: This dataset contains key characteristics about the data described in the Data Descriptor Monitored data on occupants' presence and actions in an office building. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9822593
title: Metadata record for: ClimCKmap, a spatially, temporally and climatically explicit distribution database for the Italian fauna

description: This dataset contains key characteristics about the data described in the Data Descriptor ClimCKmap, a spatially, temporally and climatically explicit distribution database for the Italian fauna. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br> <br> <br> <br>
DOI: 10.6084/m9.figshare.9822623.v2
title: Metadata record for: Monitored data on occupants' presence and actions in an office building

description: This dataset contains key characteristics about the data described in the Data Descriptor Monitored data on occupants' presence and actions in an office building. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9822593.v2
title: Metadata record for: ClimCKmap, a spatially, temporally and climatically explicit distribution database for the Italian fauna

description: This dataset contains key characteristics about the data described in the Data Descriptor ClimCKmap, a spatially, temporally and climatically explicit distribution database for the Italian fauna. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br> <br> <br> <br>
DOI: 10.6084/m9.figshare.9822623.v1
title: Metadata record for: Monitored data on occupants' presence and actions in an office building

description: This dataset contains key characteristics about the data described in the Data Descriptor Monitored data on occupants' presence and actions in an office building. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.9822593.v1
title: Metadata record for: ClimCKmap, a spatially, temporally and climatically explicit distribution database for the Italian fauna

description: This dataset contains key characteristics about the data described in the Data Descriptor ClimCKmap, a spatially, temporally and climatically explicit distribution database for the Italian fauna. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.9822179
title: AR.IA App species breakdown

description: Baseline contributing bacteria distributions to each symptom of interest.
DOI: 10.6084/m9.figshare.9822146
title: AR.IA App all species

description: List of all bacterial species to include.
DOI: 10.6084/m9.figshare.9822146.v1
title: AR.IA App all species

description: List of all bacterial species to include.
DOI: 10.6084/m9.figshare.9822179.v1
title: AR.IA App species breakdown

description: Baseline contributing bacteria distributions to each symptom of interest.