cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3519383.v1
title: Supplement 1. Commented R and JAGS codes of the models and the complete data set used in this study.

description: File List fine_data.csv (MD5: 9ec6458220867aba02650559267a47b2) coarse_data.csv (MD5: 66ba1aac22c1995ff2cf87afcfd67dce) grid_shapefiles.zip (MD5: 75f1050618a50cf2f1b4ffbdb8c9ca4d) R&JAGS_codes_and_descriptions.r (MD5: 1038789e9074783d00e3314b0414c201) Description The fine.data.csv file is a comma-separated text file. It contains data for each fine-grain grid cell in the complete set of 6238 cells. Column definitions: id_coarse - String that is unique to the coarse-grain grid cell overlapping the focal fine-grain cell. All fine-grain cells that share the same id_coarse lay within the same coarse-grain cell. lon-lat025 - Unique string that identifies each fine-grain cell. It can also be used to link the data to the shapefile of the fine-grain grid. NPP - Net primary productivity [kg carbon m-2]. LC - Shannon index of land-cover classes. PW - Precipitation in the wettest month [mm/month]. HFP - Human footprint index [Units provided in Trombulak et al. 2010]. PS - Precipitation seasonality [Coefficient of Variation]. T - Mean annual temperature [C°]. S.coarse - Number of species in the coarse-grain cell that encompasses the focal fine-grain cell. S.fine - Number of species in the cell. ref.data - Indicator variable that distinguishes the well-sampled 600 cells of the Reference data set (value of 1) from the rest (value of 0). The coarse.data.csv file is a comma-separated text file. It contains data for each coarse-grain cell in the complete set of 107 coarse-grain cells. Column definitions: id_coarse - String that is unique to each coarse-grain grid cell. It can be used to link the data to the shapefile of the coarse-grain grid. S.coarse - Number of species in the coarse-grain cell. START - Index variable (see below). STOP - Index variable. All fine-grain grid cells that lay within the coarse-grain cell have index <i>j</i> where START <i>j</i> STOP. The index <i>j</i> identifies rows in the fine.data.csv table. The file grid_shapefiles.zip is a .zip archive that contains two Esri shapefiles. The first one is the 0.25° fine-grain grid. The second one is the 2° coarse-grain grid. These shapefiles are not essential for the replication of the analyses, but they can be useful for visualization purposes or for further research. Both shapefiles can be linked to the fine_data.csv and coarse_data.csv by using the lon-lat025 and id_coarse fields respectively. The file R&JAGS_codes_and_descriptions.r is a text file that contains R and JAGS codes (together with their descriptions) that can be used to run the three models presented in the study.
DOI: 10.6084/m9.figshare.3519374
title: Appendix A. Texts summarizing the quality control and quality assurance (QA/QC) procedures and the method of estimating atmospheric Hg deposition.

description: Texts summarizing the quality control and quality assurance (QA/QC) procedures and the method of estimating atmospheric Hg deposition.
DOI: 10.6084/m9.figshare.3519368
title: Appendix A. Avian community characteristics and possible predictors of those characteristics, along with variable descriptive statistics and data sources.

description: Avian community characteristics and possible predictors of those characteristics, along with variable descriptive statistics and data sources.
DOI: 10.6084/m9.figshare.3519368.v1
title: Appendix A. Avian community characteristics and possible predictors of those characteristics, along with variable descriptive statistics and data sources.

description: Avian community characteristics and possible predictors of those characteristics, along with variable descriptive statistics and data sources.
DOI: 10.6084/m9.figshare.3519365
title: Appendix B. Possible effects of differences in species detection on results.

description: Possible effects of differences in species detection on results.
DOI: 10.6084/m9.figshare.3519365.v1
title: Appendix B. Possible effects of differences in species detection on results.

description: Possible effects of differences in species detection on results.
DOI: 10.6084/m9.figshare.3519359
title: Appendix C. NMS ordination of bird counts (square-root transformed) from 1396 BBS routes.

description: NMS ordination of bird counts (square-root transformed) from 1396 BBS routes.
DOI: 10.6084/m9.figshare.3519359.v1
title: Appendix C. NMS ordination of bird counts (square-root transformed) from 1396 BBS routes.

description: NMS ordination of bird counts (square-root transformed) from 1396 BBS routes.
DOI: 10.6084/m9.figshare.3519356
title: Appendix D. Relationships between community characteristic pairs modeled by multiple adaptive regression splines (MARS).

description: Relationships between community characteristic pairs modeled by multiple adaptive regression splines (MARS).
DOI: 10.6084/m9.figshare.3519356.v1
title: Appendix D. Relationships between community characteristic pairs modeled by multiple adaptive regression splines (MARS).

description: Relationships between community characteristic pairs modeled by multiple adaptive regression splines (MARS).
DOI: 10.6084/m9.figshare.3519350
title: Appendix E. Enlarged versions of maps from Figs. 5 and 6.

description: Enlarged versions of maps from Figs. 5 and 6.
DOI: 10.6084/m9.figshare.3519350.v1
title: Appendix E. Enlarged versions of maps from Figs. 5 and 6.

description: Enlarged versions of maps from Figs. 5 and 6.
DOI: 10.6084/m9.figshare.3519347
title: Appendix A. Tables showing correlation coefficients between six indicators of viburnum leaf beetle performance measured under laboratory and field conditions on 15 Viburnum species and oviposition preference measured in the field in 2008 and 2009.

description: Tables showing correlation coefficients between six indicators of viburnum leaf beetle performance measured under laboratory and field conditions on 15 Viburnum species and oviposition preference measured in the field in 2008 and 2009.
DOI: 10.6084/m9.figshare.3519347.v1
title: Appendix A. Tables showing correlation coefficients between six indicators of viburnum leaf beetle performance measured under laboratory and field conditions on 15 Viburnum species and oviposition preference measured in the field in 2008 and 2009.

description: Tables showing correlation coefficients between six indicators of viburnum leaf beetle performance measured under laboratory and field conditions on 15 Viburnum species and oviposition preference measured in the field in 2008 and 2009.
DOI: 10.6084/m9.figshare.3519344
title: Appendix A. Ant survivorship (across all ant species) in different herbivore treatments.

description: Ant survivorship (across all ant species) in different herbivore treatments.
DOI: 10.6084/m9.figshare.3519344.v1
title: Appendix A. Ant survivorship (across all ant species) in different herbivore treatments.

description: Ant survivorship (across all ant species) in different herbivore treatments.
DOI: 10.6084/m9.figshare.3519341
title: Appendix B. Air temperature, relative humidity, and wind speed with respect to time of day.

description: Air temperature, relative humidity, and wind speed with respect to time of day.
DOI: 10.6084/m9.figshare.3519341.v1
title: Appendix B. Air temperature, relative humidity, and wind speed with respect to time of day.

description: Air temperature, relative humidity, and wind speed with respect to time of day.
DOI: 10.6084/m9.figshare.3519338
title: Appendix A. A table depicting stand characteristics of modeled mixed-conifer conditions and a figure showing carbon carrying capacity for 24 scenarios examined.

description: A table depicting stand characteristics of modeled mixed-conifer conditions and a figure showing carbon carrying capacity for 24 scenarios examined.
DOI: 10.6084/m9.figshare.3519338.v1
title: Appendix A. A table depicting stand characteristics of modeled mixed-conifer conditions and a figure showing carbon carrying capacity for 24 scenarios examined.

description: A table depicting stand characteristics of modeled mixed-conifer conditions and a figure showing carbon carrying capacity for 24 scenarios examined.
DOI: 10.6084/m9.figshare.3519335
title: Appendix A. Recorded plantings of the Hawaii Division of Forestry from 1910 to 1960 on the forest reserves of the lower Puna District, Hawaii Island.

description: Recorded plantings of the Hawaii Division of Forestry from 1910 to 1960 on the forest reserves of the lower Puna District, Hawaii Island.
DOI: 10.6084/m9.figshare.3519335.v1
title: Appendix A. Recorded plantings of the Hawaii Division of Forestry from 1910 to 1960 on the forest reserves of the lower Puna District, Hawaii Island.

description: Recorded plantings of the Hawaii Division of Forestry from 1910 to 1960 on the forest reserves of the lower Puna District, Hawaii Island.
DOI: 10.6084/m9.figshare.3519332
title: Appendix B. Diameter-to-biomass models used to estimate aboveground biomass (AGB) of Hawaii’s forests.

description: Diameter-to-biomass models used to estimate aboveground biomass (AGB) of Hawaii’s forests.
DOI: 10.6084/m9.figshare.3519332.v1
title: Appendix B. Diameter-to-biomass models used to estimate aboveground biomass (AGB) of Hawaii’s forests.

description: Diameter-to-biomass models used to estimate aboveground biomass (AGB) of Hawaii’s forests.
DOI: 10.6084/m9.figshare.3519329
title: Appendix C. Species-specific and general diameter-to-height models used to estimate height of common native and nonnative trees in Hawaii.

description: Species-specific and general diameter-to-height models used to estimate height of common native and nonnative trees in Hawaii.
DOI: 10.6084/m9.figshare.3519329.v1
title: Appendix C. Species-specific and general diameter-to-height models used to estimate height of common native and nonnative trees in Hawaii.

description: Species-specific and general diameter-to-height models used to estimate height of common native and nonnative trees in Hawaii.
DOI: 10.6084/m9.figshare.3519326
title: Appendix D. Estimates of wood density of common native and nonnative trees of Hawaii.

description: Estimates of wood density of common native and nonnative trees of Hawaii.
DOI: 10.6084/m9.figshare.3519326.v1
title: Appendix D. Estimates of wood density of common native and nonnative trees of Hawaii.

description: Estimates of wood density of common native and nonnative trees of Hawaii.
DOI: 10.6084/m9.figshare.3519323
title: Appendix E. The number of pixels and average aboveground C of individual lava flows across the various Forest Reserves of the Puna District of Hawaii Island.

description: The number of pixels and average aboveground C of individual lava flows across the various Forest Reserves of the Puna District of Hawaii Island.
DOI: 10.6084/m9.figshare.3519323.v1
title: Appendix E. The number of pixels and average aboveground C of individual lava flows across the various Forest Reserves of the Puna District of Hawaii Island.

description: The number of pixels and average aboveground C of individual lava flows across the various Forest Reserves of the Puna District of Hawaii Island.
DOI: 10.6084/m9.figshare.3519320
title: Appendix A. Supplementary methods for Forest Inventory and Analysis (FIA) data filtering and analysis, measurement error models, and Geophysical Fluid Dynamics Laboratory LM3V dynamic global vegetation model optimization.

description: Supplementary methods for Forest Inventory and Analysis (FIA) data filtering and analysis, measurement error models, and Geophysical Fluid Dynamics Laboratory LM3V dynamic global vegetation model optimization.
DOI: 10.6084/m9.figshare.3519320.v1
title: Appendix A. Supplementary methods for Forest Inventory and Analysis (FIA) data filtering and analysis, measurement error models, and Geophysical Fluid Dynamics Laboratory LM3V dynamic global vegetation model optimization.

description: Supplementary methods for Forest Inventory and Analysis (FIA) data filtering and analysis, measurement error models, and Geophysical Fluid Dynamics Laboratory LM3V dynamic global vegetation model optimization.
DOI: 10.6084/m9.figshare.3519317
title: Appendix B. Supplementary table (regression results for FIA data and LM3V output) and figures.

description: Supplementary table (regression results for FIA data and LM3V output) and figures.
DOI: 10.6084/m9.figshare.3519317.v1
title: Appendix B. Supplementary table (regression results for FIA data and LM3V output) and figures.

description: Supplementary table (regression results for FIA data and LM3V output) and figures.
DOI: 10.6084/m9.figshare.3519314
title: Appendix A. Moisture content and wood density of species sampled in this study.

description: Moisture content and wood density of species sampled in this study.
DOI: 10.6084/m9.figshare.3519314.v1
title: Appendix A. Moisture content and wood density of species sampled in this study.

description: Moisture content and wood density of species sampled in this study.
DOI: 10.6084/m9.figshare.3519311
title: Appendix A. Forest structure and composition of the Tunjemir and Zanoglina areas in the Perućica forest reserve.

description: Forest structure and composition of the Tunjemir and Zanoglina areas in the Perućica forest reserve.
DOI: 10.6084/m9.figshare.3519311.v1
title: Appendix A. Forest structure and composition of the Tunjemir and Zanoglina areas in the Perućica forest reserve.

description: Forest structure and composition of the Tunjemir and Zanoglina areas in the Perućica forest reserve.
DOI: 10.6084/m9.figshare.3519308
title: Appendix B. Plots of percentage growth change values with respect to prior growth for annual growth increments of Abies alba and Fagus sylvatica, including the boundary line functions for both species.

description: Plots of percentage growth change values with respect to prior growth for annual growth increments of Abies alba and Fagus sylvatica, including the boundary line functions for both species.
DOI: 10.6084/m9.figshare.3519308.v1
title: Appendix B. Plots of percentage growth change values with respect to prior growth for annual growth increments of Abies alba and Fagus sylvatica, including the boundary line functions for both species.

description: Plots of percentage growth change values with respect to prior growth for annual growth increments of Abies alba and Fagus sylvatica, including the boundary line functions for both species.
DOI: 10.6084/m9.figshare.3519305
title: Appendix C. Animations showing the spatial and temporal patterns of canopy accession (including both gap origin and release) in the four disturbance history plots.

description: Animations showing the spatial and temporal patterns of canopy accession (including both gap origin and release) in the four disturbance history plots.
DOI: 10.6084/m9.figshare.3519305.v1
title: Appendix C. Animations showing the spatial and temporal patterns of canopy accession (including both gap origin and release) in the four disturbance history plots.

description: Animations showing the spatial and temporal patterns of canopy accession (including both gap origin and release) in the four disturbance history plots.
DOI: 10.6084/m9.figshare.3519302
title: Appendix D. Number of gapmakers in different decay classes for Fagus sylvatica and Abies alba and density of seedlings and saplings in the three windthrow and neighboring control areas.

description: Number of gapmakers in different decay classes for Fagus sylvatica and Abies alba and density of seedlings and saplings in the three windthrow and neighboring control areas.
DOI: 10.6084/m9.figshare.3519302.v1
title: Appendix D. Number of gapmakers in different decay classes for Fagus sylvatica and Abies alba and density of seedlings and saplings in the three windthrow and neighboring control areas.

description: Number of gapmakers in different decay classes for Fagus sylvatica and Abies alba and density of seedlings and saplings in the three windthrow and neighboring control areas.
DOI: 10.6084/m9.figshare.3519299
title: Appendix E. Maps of canopy gaps for the four disturbance history plots.

description: Maps of canopy gaps for the four disturbance history plots.
DOI: 10.6084/m9.figshare.3519299.v1
title: Appendix E. Maps of canopy gaps for the four disturbance history plots.

description: Maps of canopy gaps for the four disturbance history plots.
DOI: 10.6084/m9.figshare.3519296
title: Appendix A. Hygiene protocols.

description: Hygiene protocols.
DOI: 10.6084/m9.figshare.3519293
title: Appendix B. Photographs of the study sites used for the simulations.

description: Photographs of the study sites used for the simulations.
DOI: 10.6084/m9.figshare.3519296.v1
title: Appendix A. Hygiene protocols.

description: Hygiene protocols.
DOI: 10.6084/m9.figshare.3519293.v1
title: Appendix B. Photographs of the study sites used for the simulations.

description: Photographs of the study sites used for the simulations.
DOI: 10.6084/m9.figshare.3519290
title: Appendix C. Representativeness of the swabbed sample of frogs.

description: Representativeness of the swabbed sample of frogs.
DOI: 10.6084/m9.figshare.3519290.v1
title: Appendix C. Representativeness of the swabbed sample of frogs.

description: Representativeness of the swabbed sample of frogs.
DOI: 10.6084/m9.figshare.3519287
title: Supplement 1. R code for simulating the effect of chytridiomycosis on survival and OpenBUGS code for fitting the hierarchical model of the probability of infection, the hierarchical linear model of zoospore load, and the Cormack-Jolly-Seber model incorporating the hierarchical model of the probability of infection.

description: File List pr_infection_model.txt (MD5: cd685fbdf0eedad7613c370ec0e4847a) zoospore_load_model.txt (MD5: a135ca5b1cc6b7af5dbc749bbabb43db) CJS_model.txt (MD5: cc0bf7a426c7ddd03a4219b1677a7a72) simulation_code.txt (MD5: 5ace92e7fd8030ef4a89ba5f524a3ffa) Description pr_infection_model.txt: OpenBUGS code for fitting the hierarchical model of the probability of infection. Data is included. zoospore_load_model.txt: OpenBUGS code for fitting the hierarchical linear model of zoospore load. Data is included. CJS_model.txt: OpenBUGS code for fitting the Cormack-Jolly-Seber model, incorporating the hierarchical model of the probability of infection. Data is included. simulation_code.txt: R code for simulating the effect of chytridiomycosis on survival. The code provides an example of estimating the change in probability of survival between the chytrid-exposed and chytrid-free scenarios for a single wetland in a single month.
DOI: 10.6084/m9.figshare.3519287.v1
title: Supplement 1. R code for simulating the effect of chytridiomycosis on survival and OpenBUGS code for fitting the hierarchical model of the probability of infection, the hierarchical linear model of zoospore load, and the Cormack-Jolly-Seber model incorporating the hierarchical model of the probability of infection.

description: File List pr_infection_model.txt (MD5: cd685fbdf0eedad7613c370ec0e4847a) zoospore_load_model.txt (MD5: a135ca5b1cc6b7af5dbc749bbabb43db) CJS_model.txt (MD5: cc0bf7a426c7ddd03a4219b1677a7a72) simulation_code.txt (MD5: 5ace92e7fd8030ef4a89ba5f524a3ffa) Description pr_infection_model.txt: OpenBUGS code for fitting the hierarchical model of the probability of infection. Data is included. zoospore_load_model.txt: OpenBUGS code for fitting the hierarchical linear model of zoospore load. Data is included. CJS_model.txt: OpenBUGS code for fitting the Cormack-Jolly-Seber model, incorporating the hierarchical model of the probability of infection. Data is included. simulation_code.txt: R code for simulating the effect of chytridiomycosis on survival. The code provides an example of estimating the change in probability of survival between the chytrid-exposed and chytrid-free scenarios for a single wetland in a single month.
DOI: 10.6084/m9.figshare.3519284
title: Appendix A. Expanded methods.

description: Expanded methods.
DOI: 10.6084/m9.figshare.3519281
title: Appendix B. A table with descriptions of the predictor variables in the three models.

description: A table with descriptions of the predictor variables in the three models.
DOI: 10.6084/m9.figshare.3519278
title: Appendix C. A table detailing the literature database.

description: A table detailing the literature database.
DOI: 10.6084/m9.figshare.3519275
title: Appendix D. A figure depicting the age distribution of samples by taxonomic group.

description: A figure depicting the age distribution of samples by taxonomic group.
DOI: 10.6084/m9.figshare.3519272
title: Appendix E. A table summarizing data by taxonomic group.

description: A table summarizing data by taxonomic group.
DOI: 10.6084/m9.figshare.3519269
title: Appendix F. Correlation matrices for predictor variables.

description: Correlation matrices for predictor variables.
DOI: 10.6084/m9.figshare.3519266
title: Appendix G. A figure presenting model-averaged parameters of the patch model (model 1) for Sorenson and Morisita-Horn similarity.

description: A figure presenting model-averaged parameters of the patch model (model 1) for Sorenson and Morisita-Horn similarity.
DOI: 10.6084/m9.figshare.3519263
title: Appendix H. A figure presenting model-averaged parameters of the distance model (model 2) for Sorenson and Morisita-Horn similarity.

description: A figure presenting model-averaged parameters of the distance model (model 2) for Sorenson and Morisita-Horn similarity.
DOI: 10.6084/m9.figshare.3519260
title: Appendix I. A figure presenting model-averaged parameters of the general model (model 3) for species richness and Fisher's alpha.

description: A figure presenting model-averaged parameters of the general model (model 3) for species richness and Fisher's alpha.
DOI: 10.6084/m9.figshare.3519257
title: Appendix J. A figure displaying modeled recovery trajectories for species richness.

description: A figure displaying modeled recovery trajectories for species richness.
DOI: 10.6084/m9.figshare.3519254
title: Appendix K. A table summarizing sensitivity analysis of recovery time estimates for species richness, Sorenson similarity, and Morisita-Horn similarity.

description: A table summarizing sensitivity analysis of recovery time estimates for species richness, Sorenson similarity, and Morisita-Horn similarity.
DOI: 10.6084/m9.figshare.3519251
title: Appendix A. Discussion of caveats associated with the analysis and an assessment of the origin-estimation model.

description: Discussion of caveats associated with the analysis and an assessment of the origin-estimation model.
DOI: 10.5517/ccdc.csd.cc25h42x
title: CCDC 2010538: Experimental Crystal Structure Determination

description: Related Article: Nam Jung Heo, Ju Ho Yang, Vincent M. Lynch, Byoung Joon Ko, Jonathan L. Sessler, Sung Kuk Kim|2020|Chemical Science|11|8288|doi:10.1039/D0SC03445B
DOI: 10.6084/m9.figshare.3519251.v1
title: Appendix A. Discussion of caveats associated with the analysis and an assessment of the origin-estimation model.

description: Discussion of caveats associated with the analysis and an assessment of the origin-estimation model.
DOI: 10.5517/ccdc.csd.cc25h43y
title: CCDC 2010539: Experimental Crystal Structure Determination

description: Related Article: Nam Jung Heo, Ju Ho Yang, Vincent M. Lynch, Byoung Joon Ko, Jonathan L. Sessler, Sung Kuk Kim|2020|Chemical Science|11|8288|doi:10.1039/D0SC03445B
DOI: 10.6084/m9.figshare.3519248
title: Appendix B. Maps showing densities of occurrence locations of eastern red bats (Lasiurus borealis) and hoary bats (Lasiurus cinereus) in eastern North America, grouped by sex.

description: Maps showing densities of occurrence locations of eastern red bats (Lasiurus borealis) and hoary bats (Lasiurus cinereus) in eastern North America, grouped by sex.
DOI: 10.6084/m9.figshare.3519248.v1
title: Appendix B. Maps showing densities of occurrence locations of eastern red bats (Lasiurus borealis) and hoary bats (Lasiurus cinereus) in eastern North America, grouped by sex.

description: Maps showing densities of occurrence locations of eastern red bats (Lasiurus borealis) and hoary bats (Lasiurus cinereus) in eastern North America, grouped by sex.