cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25403/upresearchdata.20286168
title: Prospective tuberculosis diagnostic biomarkers from human skin volatile organic compounds

description: The data cohort consisted of 38 individuals ( 15 patients & 23 controls) who gave written consent prior to taking part in the study. The control group was clinically proven to be TB negative, similarly, TB patients were clinically provent to be TB positive and patients were sampled prior to comencing with the TB treatment. Ethical approval for the study was received from the UP medical health faculty ethical commitee, the NAS faculty ethical committe, Steve Biko Academic hospital (SBAH) ethical committee and Tshwane district hospital (TDH) ethical committee. Both hospitals gave permission for the study to be conducted on their premises. Non-invasive PDMS samplers were used to collect human skin volatile organic compound samples on the skin above the wrist. 70% isopropanol swabs were used to clean the sampling site, Mylar was used to cover the sampler and Micropore tape was used to attach the sampler and mylar to the skin. Sampling was conducted for a duration of one hour, after which the PDMS sampler was removed and placed in a glass container and transported to the University of Pretoria Hatfield campus Chemistry department. Samples were stores in a Freezer at minus 18 degress celsius, samples were allowed to reach room temperature on a work bench prior to instrumental analysis with the Gerstel thermal desorption (TDS 3) unit coupled to the LECO Pegusus 4D Time-of-flight Mass Spectrometer. The data was processed using the ChromaTof software (version 4.50.8.0), the minimum signal-to-noise ratio required for the sub peak to be retained was 20 with a baseline offset of 1.0, which is defined by the instrument. A 750 (of 1000) match was required to combine sub peaks while a 75% match was required for mass spectral library identification using the NIST14 library. Tentative identification of the skin VOCs was done by mass spectral library matching with a 75% match criterion and by calculating the linear retention indices using a C8-C28 n-alkanes standard (Sigma-Aldrich®, South Africa) according to the Van den Dool and Kratz method. Experimental linear retention indices were compared to those reported in the literature. The Mass Spectrometry Total Useful Signal (MSTUS) normalization method was used.Statistical analysis was conducted using two approaches namely; targeted analysis where compounds found in this study were compared to those in the literature, and non-targeted analysis which focused on finding novel compounds that may have biomarker capabilities. All calculations were carried out using SPSS® 25 statistical software (IBM® Corp. Armonk, New York, USA) except for the High Performance variable selection calculation which was done on the SAS 9.4 (Cary, North Carolina, USA).
DOI: 10.25403/upresearchdata.20286168.v1
title: Prospective tuberculosis diagnostic biomarkers from human skin volatile organic compounds

description: The data cohort consisted of 38 individuals ( 15 patients & 23 controls) who gave written consent prior to taking part in the study. The control group was clinically proven to be TB negative, similarly, TB patients were clinically provent to be TB positive and patients were sampled prior to comencing with the TB treatment. Ethical approval for the study was received from the UP medical health faculty ethical commitee, the NAS faculty ethical committe, Steve Biko Academic hospital (SBAH) ethical committee and Tshwane district hospital (TDH) ethical committee. Both hospitals gave permission for the study to be conducted on their premises. Non-invasive PDMS samplers were used to collect human skin volatile organic compound samples on the skin above the wrist. 70% isopropanol swabs were used to clean the sampling site, Mylar was used to cover the sampler and Micropore tape was used to attach the sampler and mylar to the skin. Sampling was conducted for a duration of one hour, after which the PDMS sampler was removed and placed in a glass container and transported to the University of Pretoria Hatfield campus Chemistry department. Samples were stores in a Freezer at minus 18 degress celsius, samples were allowed to reach room temperature on a work bench prior to instrumental analysis with the Gerstel thermal desorption (TDS 3) unit coupled to the LECO Pegusus 4D Time-of-flight Mass Spectrometer. The data was processed using the ChromaTof software (version 4.50.8.0), the minimum signal-to-noise ratio required for the sub peak to be retained was 20 with a baseline offset of 1.0, which is defined by the instrument. A 750 (of 1000) match was required to combine sub peaks while a 75% match was required for mass spectral library identification using the NIST14 library. Tentative identification of the skin VOCs was done by mass spectral library matching with a 75% match criterion and by calculating the linear retention indices using a C8-C28 n-alkanes standard (Sigma-Aldrich®, South Africa) according to the Van den Dool and Kratz method. Experimental linear retention indices were compared to those reported in the literature. The Mass Spectrometry Total Useful Signal (MSTUS) normalization method was used.Statistical analysis was conducted using two approaches namely; targeted analysis where compounds found in this study were compared to those in the literature, and non-targeted analysis which focused on finding novel compounds that may have biomarker capabilities. All calculations were carried out using SPSS® 25 statistical software (IBM® Corp. Armonk, New York, USA) except for the High Performance variable selection calculation which was done on the SAS 9.4 (Cary, North Carolina, USA).
DOI: 10.25416/ntr.20290971
title: Curriculum Mapping Workshop (1-2hrs)

description: Materials to support a workshop on ensuring that attendees modules are constructively aligned. <br> 1) Review of Learners 2) Review of Learning Outcomes (understandable and up to date) 3a) Review alignment between learning outcomes and assessments and learning activities (using stickers or highlighters to map) 3b) Identify "pinch points", "threshold concepts" and "practice to celebrate" (supporting trigger cards) 4) Forward planning
DOI: 10.25416/ntr.20290971.v1
title: Curriculum Mapping Workshop (1-2hrs)

description: Materials to support a workshop on ensuring that attendees modules are constructively aligned. <br> 1) Review of Learners 2) Review of Learning Outcomes (understandable and up to date) 3a) Review alignment between learning outcomes and assessments and learning activities (using stickers or highlighters to map) 3b) Identify "pinch points", "threshold concepts" and "practice to celebrate" (supporting trigger cards) 4) Forward planning
DOI: 10.6084/m9.figshare.20075945
title: Supplemental Tables 1-3

description: Supplemental Table 1: Complete list of functional categories provided by DAVID software <br> Supplemental Table 2: Functional gene categories associated with skeletal muscle function and metabolism that are grouped together baed upon similar cell function. <br> Supplemental Table 3: The list of gene within each of the selected categories from the grouped list of functional categories.
DOI: 10.6084/m9.figshare.20075945.v1
title: Supplemental Tables 1-3

description: Supplemental Table 1: Complete list of functional categories provided by DAVID software <br> Supplemental Table 2: Functional gene categories associated with skeletal muscle function and metabolism that are grouped together baed upon similar cell function. <br> Supplemental Table 3: The list of gene within each of the selected categories from the grouped list of functional categories.
DOI: 10.25410/ukzn.19482374
title: Patients and Healthcare Professionals Aggregated Data

description: This is a summary of aggregated data being the foundation of the research study " Perceptions and attitudes of patients and healthcare workers towards the use of telemedicine in Botswana: A qualitative study."
DOI: 10.25410/ukzn.19482374.v2
title: Patients and Healthcare Professionals Aggregated Data

description: This is a summary of aggregated data being the foundation of the research study " Perceptions and attitudes of patients and healthcare workers towards the use of telemedicine in Botswana: A qualitative study."
DOI: 10.25410/ukzn.19482374.v1
title: Patients and Healthcare Professionals Aggregated Data

description: This is a summary of aggregated data being the foundation of the research study " Perceptions and attitudes of patients and healthcare workers towards the use of telemedicine in Botswana: A qualitative study."
DOI: 10.5281/zenodo.6821928
title: Data from the paper "Learning to clusterize urban areas: two competitive approaches and an empirical validation"

description: Data for urban clustering used in the paper "Learning to clusterize urban areas: two competitive approaches and an empirical validation". We release two datasets for urban clustering based on data acquired in Santiago de Chile. The first dataset is computed at the level of urban blocks. The second dataset is computed at the level of individuals using a uniform sample of Santiago inhabitants. Both datasets comprises features based on social characteristics (e.g., SES), land use, and aesthetic visual perception of the city. The features of each data unit (blocks or individuals) are provided using row packing (each row is a data unit) in CSV files. We release PCA (Principal Components Analysis) features for both datasets.
DOI: 10.5281/zenodo.6821927
title: Data from the paper "Learning to clusterize urban areas: two competitive approaches and an empirical validation"

description: Data for urban clustering used in the paper "Learning to clusterize urban areas: two competitive approaches and an empirical validation". We release two datasets for urban clustering based on data acquired in Santiago de Chile. The first dataset is computed at the level of urban blocks. The second dataset is computed at the level of individuals using a uniform sample of Santiago inhabitants. Both datasets comprises features based on social characteristics (e.g., SES), land use, and aesthetic visual perception of the city. The features of each data unit (blocks or individuals) are provided using row packing (each row is a data unit) in CSV files. We release PCA (Principal Components Analysis) features for both datasets.
DOI: 10.5281/zenodo.6822019
title: Pyrrhura egregia zanfona 1

description: .
DOI: 10.5281/zenodo.6822018
title: Pyrrhura egregia zanfona 1

description: .
DOI: 10.5281/zenodo.6390910
title: Project 2021/05/X/ST8/00114: Introduction of moisture content as a parameter of the breakage probability function of granular biomass - Dataset

description: This dataset contains the results of research conducted at Purdue University, Agricultural&Biological Engineering during research stay in the period 15.11.2021 - 14.02.2022. The aim of the research was to investigate and analyze the breakage probability of different types of grains for various moisture content levels: 10%, 14%, 18%, 22% and 26 % and particle sizes. The experimental part involves compression tests of selected grains (rice, corn) and specific breakage energy determination. In the result the breakage probability equations in dependance of moisture content and particle size were developed. This dataset contains: the results of initial moisture content measurement, the results of moisture content measurement after wetting, The results of bulk density measurement, the results of compression tests for low compression rate (1.25 mm/min) the results of compression tests for high compression rate (125 mm/min)
description: The research was funded by National Science Centre of Poland under the project 2021/05/X/ST8/00114: Introduction of moisture content as a parameter of the breakage probability function of granular biomass – research internship at Purdue University, USA in the period 30.08.2021-30.08.2022
DOI: 10.5517/ccdc.csd.cc1mpwgn
title: CCDC 1510582: Experimental Crystal Structure Determination

description: Related Article: Guanhong Wu, Chenkun Zhou, Wenmei Ming, Dan Han, Shiyou Chen, Dong Yang, Tiglet Besara, Jennifer Neu, Theo Siegrist, Mao-Hua Du, Biwu Ma and Angang Dong|2018|ACS Energy Lett.|3|1443|doi:10.1021/acsenergylett.8b00661
description: Related Article: Biwu Ma, Zhao Yuan, Chenkun Zhou|2021|U.S.Patents|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bd8pq
title: CCDC 2156753: Experimental Crystal Structure Determination

description: Related Article: Rong-Da Lai, Hui-Lin Feng, Yan-Qiong Sun, Xin-Xiong Li, Shou-Tian Zheng|2022|Dalton Trans.|51|10571|doi:10.1039/D2DT01472F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.6822095
title: Amazona aestiva zanfona 1

description: .
DOI: 10.5281/zenodo.6822094
title: Amazona aestiva zanfona 1

description: .
DOI: 10.17632/djyt42v2mh.1
title: Dataset of additively manufactured architectured material

description: The following dataset contains the experimental and numerical investigation of compressive stress in foam-filled close cell architectured materials. Quasi-static compression testing was performed on filled and unfilled lattice structures at 5 mm/min to obtain stress vs. strain data. The data was used to calculate mechanical properties such as energy absorption and peak stress. For numerical investigation, tensile properties of parent material (PETG) and foam were obtained from ASTM D638-14 and ISO 3386-1 respectively.  Elastic and plastic properties were extracted for PETG to simulate the mechanical behavior. Videos of compression testing and numerical simulation are included for comparison.
DOI: 10.17632/3rdjbmth68.1
title: CYN CPF

description: Data from the paper Toxic effects of the Cylindrospermopsin and Chlorpyrifos combination on the differentiated SH-SY5Y Human Neuroblastoma Cell Line
DOI: 10.17632/bzpfcnzg8w.1
title: DAP5 enables translation re-initiation on messenger RNAs with structured 5' leaders

description: Source imaging data accompanying the manuscript "DAP5 enables translation re-initiation on messenger RNAs with structured 5' leaders".
The dataset includes unprocessed imaging data (gels and blots) used to prepare the different figures of the manuscript.
DOI: 10.17632/4dph22x4yz.2
title: Automation of Systematic Literature Reviews: A Systematic Literature Review

description: Data Extraction worksheet used for gathering evidence and trends in the automation of systematic literature reviews.
DOI: 10.17632/sh236c3j3y.1
title: Precession-driven changes in air-sea CO2 exchange by East Asian summer monsoon in the Western Tropical Pacific since MIS 6

description: The data including sea-surface pH and pCO2 and ΔpCO2 reconstructed from planktic foraminiferal B/Ca ratios in the Western tropical Pacific.
DOI: 10.17632/g38s3g4ys9.1
title: Dr. Praveen

description: Temperature is the major driving factor of the growth and survival of aquatic organisms as it directly affects their immunity, metabolic rate, and oxygen demand. Due to ectothermic nature of aquatic animals such as fish and shellfish, body temperature fluctuates according to changes in the environmental temperature. Increasing water temperatures affect the solubility and availability of oxygen which negatively affects aerobic metabolism. However, changes in the environmental temperature above the organism's thermal threshold will increase the oxygen demand coupled with metabolic shifts as well as also reduce the feed intake and suppress their growth and immunity. Therefore, in our study, we have proposed the thermal modeling of greenhouse integrated semi-transparent photovoltaic thermal (GiSPVT) system integrated with aquaculture water pond. An analytical expression for water pond temperature (thermal energy) and electrical efficiency (electrical energy) in terms of design and climatic parameters has been derived. In this case, thermal energy obtained from the system has been utilised to heat the water pond to maintain desired temperature for aquaculture. The proposed thermal model is valid for all climatic and weather conditions. Special cases of the proposed system namely poly-greenhouse of different shapes have also been discussed. The comparison of fish production in poly-greenhouse has also been compared with the open condition. we have revealed that the production of fish in an underground tank under poly greenhouse gives about 25% higher yield during winter condition as compared to open fish production. This is due to trapped thermal energy inside the poly greenhouse and geothermal energy. Apart from this the experimental validation has also been carried out for water pond temperature.
DOI: 10.17632/chz739xdcm.3
title: Stereotype-Target Congruence Appraisals Contribute to the  Intercultural Judgement Agility of Individuals High on Cultural Metacognition

description: Study 2
DOI: 10.17632/x8t77wx8bz.1
title: Gut barrier impairment and mitochondrial dysfunction in patients living with HIV

description: Evaluation of  oral bacteriotherapy effects on Apical Junctional Complex, cellular apoptosis machinery and mitochondrial function in patients living with HIV
DOI: 10.17632/f6w8m4zhjh.2
title: Building Data set

description: The current dataset is prepared to feed ML algorithms for finding emergency exits in buildings. Emergency exits are the two doors on each floor that connect an air-lock space to the stairwell, and the pattern is quite similar in most high-rise buildings. This led to the selection of the following two attributes: 'the distance to the nearest door' and 'the distance to the nearest stairwell'.
The datasets comprise manually labeled data with 1732 door samples from four high-rise building models, containing 1517 'non-Emergency Exit' and 215 'Emergency Exit', each with the two mentioned attributes.
DOI: 10.17632/g6nv8fvs3f.1
title: LINF_300011100

description: protein kinase
Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.19144458
title: The mass water content of paddy soil after harvest is strongly associated with the accumulation of organic matter as the source of available nitrogen

description: Paddy soils are the dominant source of nitrogen for rice via mineralization, and knowledge about the available nitrogen (AN) in paddy soil is important for rice cultivation. Although the relationship between AN and soil physicochemical parameters has been studied, no systematic studies of the relationships between AN and the soil moisture content of various soil types in Japan have been studied. Therefore, we examined the impacts of soil types and treatment of organic matter application or paddy–upland rotation on these relationships. We sampled topsoils from 30 paddy fields throughout Japan. We compared the relationships between AN and soil physicochemical properties, such as total nitrogen (TN), cation exchange capacity, soil water-holding capacity (WHC), mass water content after harvest (MWH), and water content after harvest (WCH). The scatter diagram revealed that AN and either MWH or WCH (<i>p</i> &lt; 0.01) had the highest positive linear correlation coefficient; the pattern became clearer after separating Andosols and non-Andosols. We analyzed the relationship between AN and either TN or MWH in 100 topsoils, including soils from treatment plots with successive organic matter application or paddy-upland rotation. A significantly positive correlation between AN and TN was observed, although the regression slopes for volcanic or non-volcanic soils differed. The decrease in AN due to frequent paddy–upland rotation was greater than that for TN. On the other hand, a highly positive correlation between AN and MWH was observed, and the coefficient of determination was higher than that for AN and TN. TN and the WHC increased when the accumulation of organic matter in paddy soil was greater. As there was a positive correlation between WHC and MWH, a positive correlation was also observed between AN and MWH. Additionally, we investigated year-to-year variation in MWH using topsoil samples collected before autumn tillage, for 3–5 consecutive years in 24 plots, for various soil types throughout Japan. In order to eliminate the effects of precipitation and to minimize the fluctuation of MWH in paddy topsoil, it was desirable to collect topsoil samples within 24–96 hours of the last precipitation of 1 mm h<sup>−1</sup> or more, for the measurement of moisture content.
DOI: 10.6084/m9.figshare.19144458.v3
title: The mass water content of paddy soil after harvest is strongly associated with the accumulation of organic matter as the source of available nitrogen

description: Paddy soils are the dominant source of nitrogen for rice via mineralization, and knowledge about the available nitrogen (AN) in paddy soil is important for rice cultivation. Although the relationship between AN and soil physicochemical parameters has been studied, no systematic studies of the relationships between AN and the soil moisture content of various soil types in Japan have been studied. Therefore, we examined the impacts of soil types and treatment of organic matter application or paddy–upland rotation on these relationships. We sampled topsoils from 30 paddy fields throughout Japan. We compared the relationships between AN and soil physicochemical properties, such as total nitrogen (TN), cation exchange capacity, soil water-holding capacity (WHC), mass water content after harvest (MWH), and water content after harvest (WCH). The scatter diagram revealed that AN and either MWH or WCH (<i>p</i> &lt; 0.01) had the highest positive linear correlation coefficient; the pattern became clearer after separating Andosols and non-Andosols. We analyzed the relationship between AN and either TN or MWH in 100 topsoils, including soils from treatment plots with successive organic matter application or paddy-upland rotation. A significantly positive correlation between AN and TN was observed, although the regression slopes for volcanic or non-volcanic soils differed. The decrease in AN due to frequent paddy–upland rotation was greater than that for TN. On the other hand, a highly positive correlation between AN and MWH was observed, and the coefficient of determination was higher than that for AN and TN. TN and the WHC increased when the accumulation of organic matter in paddy soil was greater. As there was a positive correlation between WHC and MWH, a positive correlation was also observed between AN and MWH. Additionally, we investigated year-to-year variation in MWH using topsoil samples collected before autumn tillage, for 3–5 consecutive years in 24 plots, for various soil types throughout Japan. In order to eliminate the effects of precipitation and to minimize the fluctuation of MWH in paddy topsoil, it was desirable to collect topsoil samples within 24–96 hours of the last precipitation of 1 mm h<sup>−1</sup> or more, for the measurement of moisture content.