cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12344402
title: Gene database of Chromobacterium violaceum ATCC 12472

description: <i>Chromobacterium violaceum</i> is a Gram-negative, facultative anaerobic bacterium with a versatile metabolism. Commonly found in soil, the rod-shaped bacterium also synthesizes a natural violet coloured antibiotic known as violacein. But, what is perhaps most interesting of this bacterium is its ability to synthesize hydrogen cyanide from glycine. This naturally opens up biotechnological application potential such as the use of hydrogen cyanide for leaching gold from metal ores or from electronic scrap material. This work provides a gene database of <i>C. violaceum</i> ATCC 12472 through parsing its annotated genome sequence from Genbank. Comprising gene name, gene function description and gene sequence, the database should find use in a variety of biotechnology and fundamental biology studies seeking to understand the mechanistic basis of various cellular processes pertinent to this bacterium for opening up future biotechnological potential.
DOI: 10.6084/m9.figshare.12344312
title: NifH qPCR/RTqPCR and environmental data from a temperate inverse estuary

description: This dataset contains <i>nifH</i> qPCR and RT-qPCR abundances of UCYN-A1 and UCYN-A2 (nifH copies L<sup>-1</sup>) in temperate southern Australian coastal waters, and the corresponding environmental metadata for the sampling sites.
DOI: 10.6084/m9.figshare.12344312.v1
title: NifH qPCR/RTqPCR and environmental data from a temperate inverse estuary

description: This dataset contains <i>nifH</i> qPCR and RT-qPCR abundances of UCYN-A1 and UCYN-A2 (nifH copies L<sup>-1</sup>) in temperate southern Australian coastal waters, and the corresponding environmental metadata for the sampling sites.
DOI: 10.6084/m9.figshare.12860774
title: gravity explosion simulation

description: Simulations of an explosion with point mass gravity<br>
DOI: 10.6084/m9.figshare.12860774.v1
title: gravity explosion simulation

description: Simulations of an explosion with point mass gravity<br>
DOI: 10.6084/m9.figshare.12344207
title: Dadabacteria-Manually-Updated-Genomes

description: A subset of the Dadabacteria MAGs from Tara Oceans that underwent manual curation as part of this study are not in NCBI. This will serve as the public versions of MAGs analyzed for in this study.
DOI: 10.6084/m9.figshare.12344207.v1
title: Dadabacteria-Manually-Updated-Genomes

description: A subset of the Dadabacteria MAGs from Tara Oceans that underwent manual curation as part of this study are not in NCBI. This will serve as the public versions of MAGs analyzed for in this study.
DOI: 10.6084/m9.figshare.12344180
title: Funding piplie for COVID-19 authors. Funding tagged by the start year of award

description: Funding pipeline for COVID-19 authors. Funding coloured by the year of award.
DOI: 10.6084/m9.figshare.12344171
title: dataset.zip

description: This dataset is related to the article "How community adaptation affects biodiversity-ecosystem functioning relationships", Aubree et al. 2020, Ecology Letters. <br> Files contain data from simulations and the associated R code used to generate and analyze data.<br>File readme.txt explains how to use the present dataset. <br> All information about data generation and analysis are given in the related article. <br>
DOI: 10.6084/m9.figshare.12344171.v1
title: dataset.zip

description: This dataset is related to the article "How community adaptation affects biodiversity-ecosystem functioning relationships", Aubree et al. 2020, Ecology Letters. <br> Files contain data from simulations and the associated R code used to generate and analyze data.<br>File readme.txt explains how to use the present dataset. <br> All information about data generation and analysis are given in the related article. <br>
DOI: 10.6084/m9.figshare.12344180.v2
title: Funding piplie for COVID-19 authors. Funding tagged by the start year of award

description: Funding pipeline for COVID-19 authors. Funding coloured by the year of award.
DOI: 10.6084/m9.figshare.12344180.v1
title: Funding piplie for COVID-19 authors. Funding tagged by the start year of award

description: Funding pipeline for COVID-19 authors. Funding coloured by the year of award.
DOI: 10.6084/m9.figshare.12344153
title: Ctrl_KH50

description: Correlation of control KH50
DOI: 10.6084/m9.figshare.12344147
title: Ctrl_KH47

description: Correlation of control KH47
DOI: 10.6084/m9.figshare.12344150
title: Ctrl_KH49

description: Correlation of control KH49
DOI: 10.6084/m9.figshare.12344147.v1
title: Ctrl_KH47

description: Correlation of control KH47
DOI: 10.6084/m9.figshare.12344150.v1
title: Ctrl_KH49

description: Correlation of control KH49
DOI: 10.6084/m9.figshare.12344153.v1
title: Ctrl_KH50

description: Correlation of control KH50
DOI: 10.6084/m9.figshare.12344132
title: Dep_KH67

description: Correlation of deprived KH67
DOI: 10.6084/m9.figshare.12344141
title: Ctrl_KH40

description: Correlation of control KH40
DOI: 10.6084/m9.figshare.12344144
title: Ctrl_KH45

description: Correlation of control KH45
DOI: 10.5522/04/12344135.v1
title: A Rapid Review of the Asymptomatic Proportion of PCR-Confirmed SARS-CoV-2 Infections in Community Settings

description: Meta-analysis dataset for the following article: A Rapid Review of the Asymptomatic Proportion of PCR-Confirmed SARS-CoV-2 Infections in Community Settings. <br>These CSV format data enable the calculation of a pooled asymptomatic proportion of PCR-confirmed COVID-19 cases based on available studies (n=6) with methodologically-appropriate design to detect and identify truly asymptomatic cases. The asymptomatic proportion is given as the number of asymptomatic PCR-confirmed infections over the total number of PCR-confirmed infections.
DOI: 10.6084/m9.figshare.12344129
title: Dep_KH63

description: Correlation of deprived KH63
DOI: 10.6084/m9.figshare.12344129.v1
title: Dep_KH63

description: Correlation of deprived KH63
DOI: 10.6084/m9.figshare.12344132.v1
title: Dep_KH67

description: Correlation of deprived KH67
DOI: 10.6084/m9.figshare.12344144.v1
title: Ctrl_KH45

description: Correlation of control KH45
DOI: 10.6084/m9.figshare.12344102
title: Dep_KH42

description: Correlation of deprived KH42
DOI: 10.6084/m9.figshare.12344117
title: Dep_KH49

description: Correlation of deprived KH49
DOI: 10.6084/m9.figshare.12344141.v1
title: Ctrl_KH40

description: Correlation of control KH40
DOI: 10.6084/m9.figshare.12344114
title: Dep_KH45

description: Correlation of deprived KH45
DOI: 10.6084/m9.figshare.12344117.v1
title: Dep_KH49

description: Correlation of deprived KH49
DOI: 10.6084/m9.figshare.12344024
title: pH data with statistical analyses from experiments under light and darkness using Chlamydomonas reinhardtii bead bracelets and glass vials containing Chlamydomonas beads.

description: Data S1 contains raw pH data with statistical analyses for experiments using <i>Chlamydomonas </i>beads, described in the following figures: Fig.1, 2, 3, 6, 7, 8 & 9. <br><br>Data S2 file contains the raw pH data with mean and standard deviation information from the experiments referred in Data S1 file.
DOI: 10.6084/m9.figshare.12344114.v1
title: Dep_KH45

description: Correlation of deprived KH45
DOI: 10.6084/m9.figshare.12343997
title: Data associated with "Large hydrogen isotope fractionations distinguish nitrogenase-derived methane from other sources"

description: Data files associated with:<br>Luxem, Leavitt and Zhang (2020) Large hydrogen isotope fractionations distinguish nitrogenase-derived methane from other sources. Applied and Environmental Microbiology. <br>The excel file has a summary tab to describe the individual datasets included in this file.
DOI: 10.6084/m9.figshare.12344102.v2
title: Dep_KH42

description: Correlation of deprived KH42
DOI: 10.6084/m9.figshare.12344003
title: Functional Communication after Stroke

description: Data set
DOI: 10.6084/m9.figshare.12344102.v1
title: Dep_42

description: Correlation of deprived KH42
DOI: 10.6084/m9.figshare.12343973
title: Raw data from Capuchin monkey rituals: an interdisciplinary study of form and function

description: Raw data sets used to produce the results, along with explanations of variables
DOI: 10.6084/m9.figshare.12343976
title: R code for analyses from Capuchin monkey rituals: an interdisciplinary study of form and function

description: Code for conducting analyses in R
DOI: 10.6084/m9.figshare.12343973.v1
title: Raw data from Capuchin monkey rituals: an interdisciplinary study of form and function

description: Raw data sets used to produce the results, along with explanations of variables
DOI: 10.6084/m9.figshare.12343976.v1
title: R code for analyses from Capuchin monkey rituals: an interdisciplinary study of form and function

description: Code for conducting analyses in R
DOI: 10.6084/m9.figshare.12343946
title: Supplementary R code - Survey analysis from The role of ritual behaviour in anxiety reduction: an investigation of Marathi religious practices in Mauritius

description: Statistical models of survey data
DOI: 10.6084/m9.figshare.12343949
title: Stata code for ESM analyses from Capuchin monkey rituals: an interdisciplinary study of form and function

description: Stata code for analyses presented only in the ESM
DOI: 10.6084/m9.figshare.12343955
title: Supplementary R code - HRV analysis from The role of ritual behaviour in anxiety reduction: an investigation of Marathi religious practices in Mauritius

description: Statistical models of HRV data
DOI: 10.6084/m9.figshare.12343955.v1
title: Supplementary R code - HRV analysis from The role of ritual behaviour in anxiety reduction: an investigation of Marathi religious practices in Mauritius

description: Statistical models of HRV data
DOI: 10.6084/m9.figshare.12343943
title: Supplementary Data from The role of ritual behaviour in anxiety reduction: an investigation of Marathi religious practices in Mauritius

description: Data set
DOI: 10.6084/m9.figshare.12343946.v1
title: Supplementary R code - Survey analysis from The role of ritual behaviour in anxiety reduction: an investigation of Marathi religious practices in Mauritius

description: Statistical models of survey data
DOI: 10.6084/m9.figshare.12343949.v1
title: Stata code for ESM analyses from Capuchin monkey rituals: an interdisciplinary study of form and function

description: Stata code for analyses presented only in the ESM
DOI: 10.6084/m9.figshare.12343934
title: Solute strongly impacts freezing under confinement

description: Data and code developed for the analysis performed in the following paper: Solute strongly impacts freezing under confinement, by Félix Ginot, Théo Lenavetier, Dmytro Dedovets and Sylvain Deville. The preprint can be found here: https://arxiv.org/abs/1907.10502.<br>The paper was published in Applied Physics Letters (https://aip.scitation.org/journal/apl) <br><br>The code provided here is a Jupyter notebook coded in Python.<br>The raw data used in the paper (confocal images, for one solute concentration: 0.19M) are also provided along with the code, so that the analysis can be run and tested.<br><br>
DOI: 10.6084/m9.figshare.12343943.v1
title: Supplementary Data from The role of ritual behaviour in anxiety reduction: an investigation of Marathi religious practices in Mauritius

description: Data set
DOI: 10.6084/m9.figshare.12343910
title: data1.tar.gz

description: A collection of several data sets used to illustrate fitting (generalized) linear mixed-effects models. Individual data sets are in Feather format (https://github.com/wesm/feather). They include Dyestuff, Dyestuff2, Penicillin, Pastes, InstEval, sleepstudy, cbpp, Contraception, grouseticks and VerbAgg from the lme4 package for R. The kb07 data is from github.com/dalejbarr/kronmueller-barr-2007 and ml1m is from https://grouplens.org/datasets/movielens/1m/
DOI: 10.6084/m9.figshare.12343934.v1
title: Solute strongly impacts freezing under confinement

description: Data and code developed for the analysis performed in the following paper: Solute strongly impacts freezing under confinement, by Félix Ginot, Théo Lenavetier, Dmytro Dedovets and Sylvain Deville. The preprint can be found here: https://arxiv.org/abs/1907.10502.<br>The paper was published in Applied Physics Letters (https://aip.scitation.org/journal/apl) <br><br>The code provided here is a Jupyter notebook coded in Python.<br>The raw data used in the paper (confocal images, for one solute concentration: 0.19M) are also provided along with the code, so that the analysis can be run and tested.<br><br>
DOI: 10.6084/m9.figshare.12343910.v1
title: data1.tar.gz

description: A collection of several data sets used to illustrate fitting (generalized) linear mixed-effects models. Individual data sets are in Feather format (https://github.com/wesm/feather). They include Dyestuff, Dyestuff2, Penicillin, Pastes, InstEval, sleepstudy, cbpp, Contraception, grouseticks and VerbAgg from the lme4 package for R. The kb07 data is from github.com/dalejbarr/kronmueller-barr-2007 and ml1m is from https://grouplens.org/datasets/movielens/1m/
DOI: 10.6084/m9.figshare.12341210
title: Blue tit fecal microbiota sequences (part 1)

description: This data set contains 382 raw sequence data in FASTQ format, produced by a sequencing run using Illumina MiSeq sequencing technology. The sequences came from blue tit fecal microbiota samples that were part of the same sequencing run (see in the same project the dataset “Metadata – Microbiota sequences form a blue tit trophic network, file “trophicLevel_microbiota_metadata.txt”; run blueTit1). The file names are composed of the sample_names which correspond to the metadata first column, followed by a variable part, and by the extension fastq.gz:<b> “sample-names_SXX_R1_001.fastq.gz” </b>and <b>“sample-names_SXX_R2_001.fastq.gz”</b>, respectively for the forward and reverse sequences. Data collection procedures and information on barcode sequences are described in the manuscript "Microbiota similarity between predators and prey in a blue tit trophic network" by Dion-Phénix et al. (manuscript submitted at <i>The ISME Journal</i>).
DOI: 10.6084/m9.figshare.12341210.v1
title: Blue tit fecal microbiota sequences (part 1)

description: This data set contains 382 raw sequence data in FASTQ format, produced by a sequencing run using Illumina MiSeq sequencing technology. The sequences came from blue tit fecal microbiota samples that were part of the same sequencing run (see in the same project the dataset “Metadata – Microbiota sequences form a blue tit trophic network, file “trophicLevel_microbiota_metadata.txt”; run blueTit1). The file names are composed of the sample_names which correspond to the metadata first column, followed by a variable part, and by the extension fastq.gz:<b> “sample-names_SXX_R1_001.fastq.gz” </b>and <b>“sample-names_SXX_R2_001.fastq.gz”</b>, respectively for the forward and reverse sequences. Data collection procedures and information on barcode sequences are described in the manuscript "Microbiota similarity between predators and prey in a blue tit trophic network" by Dion-Phénix et al. (manuscript submitted at <i>The ISME Journal</i>).
DOI: 10.6084/m9.figshare.12341195
title: Stress and Depression-DATA.sav

description: The online survey was conducted using an online Google Form from students of Univeriti Sains Malaysia. In total 500 students participated in the survey, the students were predominately between 18 and 26 years of age. There were more females (75.4%) than males (26.6%). The majority of students were Malaysian students (87.8%). Only 12.2% are international students.
DOI: 10.6084/m9.figshare.12341093
title: Raw VR MRT Data

description: The data that was used for analyses in the VR MRT paper.
DOI: 10.6084/m9.figshare.12341093.v1
title: Raw VR MRT Data

description: The data that was used for analyses in the VR MRT paper.
DOI: 10.25399/unisadata.12340979
title: HCI4D_2007_2017

description: Human-Computer Interaction for Development (HCI4D) papers including references and keywords selected during a systematic literature review conducted in 2018 on 2007-2017 publications from Scopus and Web of Science based on the keyword HCI4D.<br>
DOI: 10.25399/unisadata.12340979.v1
title: HCI4D_2007_2017

description: Human-Computer Interaction for Development (HCI4D) papers including references and keywords selected during a systematic literature review conducted in 2018 on 2007-2017 publications from Scopus and Web of Science based on the keyword HCI4D.<br>
DOI: 10.6084/m9.figshare.12340874
title: Additional file 1 of Genome-wide identification of the expansin gene family reveals that expansin genes are involved in fibre cell growth in cotton

description: Additional file 1: Table S1. Identification of GhEXP genes in G. hirsutum. Additional file 1: Table S2. The GaEXP genes in G. arboretum. Table S3. The GrEXP genes in G. raimondii. Table S4. Summary of cis-acting elements of GhEXP genes. Table S5. The number of cis-acting elements involved in different biological processes in the promoter region of GhEXP genes. Table S6. A list of primers used in qRT-PCR experiments.
DOI: 10.6084/m9.figshare.12340868
title: Additional file 2 of Health care seeking behavior among presumptive tuberculosis patients in Ethiopia: a systematic review and meta-analysis

description: Additional file 2. Dataset S2.
DOI: 10.6084/m9.figshare.12340874.v1
title: Additional file 1 of Genome-wide identification of the expansin gene family reveals that expansin genes are involved in fibre cell growth in cotton

description: Additional file 1: Table S1. Identification of GhEXP genes in G. hirsutum. Additional file 1: Table S2. The GaEXP genes in G. arboretum. Table S3. The GrEXP genes in G. raimondii. Table S4. Summary of cis-acting elements of GhEXP genes. Table S5. The number of cis-acting elements involved in different biological processes in the promoter region of GhEXP genes. Table S6. A list of primers used in qRT-PCR experiments.
DOI: 10.6084/m9.figshare.12340868.v1
title: Additional file 2 of Health care seeking behavior among presumptive tuberculosis patients in Ethiopia: a systematic review and meta-analysis

description: Additional file 2. Dataset S2.
DOI: 10.6084/m9.figshare.12340862
title: Additional file 1 of Health care seeking behavior among presumptive tuberculosis patients in Ethiopia: a systematic review and meta-analysis

description: Additional file 1. Figures (funnel plots) S1.
DOI: 10.6084/m9.figshare.12340850
title: Additional file 1 of Diffusion tensor imaging point to ongoing functional impairment in HIV-infected children at age 5, undetectable using standard neurodevelopmental assessments

description: Additional file 1. The dataset supporting the conclusions of this article is included within the article as an additional file nr.1. (.xls 5 year old tabular data).
DOI: 10.6084/m9.figshare.12340862.v1
title: Additional file 1 of Health care seeking behavior among presumptive tuberculosis patients in Ethiopia: a systematic review and meta-analysis

description: Additional file 1. Figures (funnel plots) S1.
DOI: 10.6084/m9.figshare.12340850.v1
title: Additional file 1 of Diffusion tensor imaging point to ongoing functional impairment in HIV-infected children at age 5, undetectable using standard neurodevelopmental assessments

description: Additional file 1. The dataset supporting the conclusions of this article is included within the article as an additional file nr.1. (.xls 5 year old tabular data).
DOI: 10.6084/m9.figshare.12340841
title: Additional file 1 of Viral metagenomic analysis of fecal samples reveals an enteric virome signature in irritable bowel syndrome

description: Additional file 1: Table S1. The demographic characteristics and medical history of the volunteers. Table S2. Detailed information about the developed sequences. Table S3. The result of correlation between different viral orders tested for each IBS subtypes and HC separately. Table S4. The viral species assigned to the sequences obtained from healthy control (HC) and different subtypes of IBS patients. Present = 1 and Absent = 0. Table S5. Variation in abundance of viral taxa derived from healthy individuals and patients with IBS. The significant variation in abundance of viral taxa in association with IBS determined using DESeq2 analysis P
DOI: 10.6084/m9.figshare.12340841.v1
title: Additional file 1 of Viral metagenomic analysis of fecal samples reveals an enteric virome signature in irritable bowel syndrome

description: Additional file 1: Table S1. The demographic characteristics and medical history of the volunteers. Table S2. Detailed information about the developed sequences. Table S3. The result of correlation between different viral orders tested for each IBS subtypes and HC separately. Table S4. The viral species assigned to the sequences obtained from healthy control (HC) and different subtypes of IBS patients. Present = 1 and Absent = 0. Table S5. Variation in abundance of viral taxa derived from healthy individuals and patients with IBS. The significant variation in abundance of viral taxa in association with IBS determined using DESeq2 analysis P
DOI: 10.25399/unisadata.12340730
title: HCI4D_2017_2019

description: Human-Computer Interaction for Development (HCI4D) papers including references and keywords selected during a systematic literature review conducted in 2018 on 2017-2019 publications from Scopus and Web of Science based on the keyword HCI4D.
DOI: 10.25399/unisadata.12340730.v1
title: HCI4D_2017_2019

description: Human-Computer Interaction for Development (HCI4D) papers including references and keywords selected during a systematic literature review conducted in 2018 on 2017-2019 publications from Scopus and Web of Science based on the keyword HCI4D.
DOI: 10.6084/m9.figshare.12340568
title: Isolation of Arsenic Resistant and Arsenopyrite Oxidizing <i>Acidithiobacillus</i> Species from pH Neutral Colombian Mine Effluents

description: Inactive mines provide a great source of bacterial diversity for studying acidophilic communities and their biotechnological applications, but prospecting of these anthropogenic environments in Colombia has been limited. Conventional microbiological methods were used to isolate acidophilic bacterial strains from effluents emanating from the Colombian gold mine ‘El Zancudo’ (Titiribí, Antioquia). Despite the drainage waters having circumneutral pH, all of the isolated strains were phylogenetically related to the extreme acidophile <i>Acidithiobacillus</i> genus. However, based upon <i>16S rRNA</i> gene sequences the mesophilic sulfur-oxidizing indigenous strains could not be assigned to a species. Pure cultures were selected by screening in medium with soluble inorganic arsenic (III) and their mineral-oxidative activity was evaluated at 30 °C in Erlenmeyer flasks with arsenopyrite ore under rotary shaking conditions. The indigenous strains were able to catalyze arsenopyrite oxidation in a mixed culture with a pulp density of 10%, maintaining their growth in the presence of &gt;80<b> </b>mM leached arsenic. This research provides information regarding the isolation of arsenic resistant bacterial communities from neutral effluents from El Zancudo mine and the possibility of the isolated strains to be useful in the biooxidation pretreatment of refractory gold-bearing arsenopyrite ores and concentrates.