cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7986341
title: Additional file 1: of Genome-wide identification of Gossypium INDETERMINATE DOMAIN genes and their expression profiles in ovule development and abiotic stress responses

description: Table S1. Gene ID and name for IDD genes of Arabidopsis, rice, G. hirsutum, G. arborium, G. raimondii, T. cacao, S. moellendorffii and P. patens. Table S2. List of qPCR primers used in this study. Table S3. Biophysical properties of all GhIDD gene family members. Table S4. Orthologs/paralogs IDD gene pairs within and between At and Dt sub-genomes of G. hirsutum along with their types of duplication and Ka/Ks values. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.7986341.v1
title: Additional file 1: of Genome-wide identification of Gossypium INDETERMINATE DOMAIN genes and their expression profiles in ovule development and abiotic stress responses

description: Table S1. Gene ID and name for IDD genes of Arabidopsis, rice, G. hirsutum, G. arborium, G. raimondii, T. cacao, S. moellendorffii and P. patens. Table S2. List of qPCR primers used in this study. Table S3. Biophysical properties of all GhIDD gene family members. Table S4. Orthologs/paralogs IDD gene pairs within and between At and Dt sub-genomes of G. hirsutum along with their types of duplication and Ka/Ks values. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.7986194
title: Additional file 2: of The epigenetic clock as a predictor of disease and mortality risk: a systematic review and meta-analysis

description: Supplimentary MetaData from meta-analysis.Â (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.7986194.v1
title: Additional file 2: of The epigenetic clock as a predictor of disease and mortality risk: a systematic review and meta-analysis

description: Supplimentary MetaData from meta-analysis.Â (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.7986170
title: Additional file 7: of Changes in the Arabidopsis RNA-binding proteome reveal novel stress response mechanisms

description: KEGG BlastKOALA ( https://www.kegg.jp/blastkoala/ ) pathways represented by the differentially abundant proteins responsive to drought stress (XLSX 44 kb)
DOI: 10.6084/m9.figshare.7986176
title: Additional file 8: of Changes in the Arabidopsis RNA-binding proteome reveal novel stress response mechanisms

description: Inparalog and Orthologs clusters for drought stress responsive protein of Arabidopsis thaliana and selected organism mined using the Inparanoid database ( http://inparanoid.sbc.su.se/ ). (XLSX 308 kb)
DOI: 10.6084/m9.figshare.7986170.v1
title: Additional file 7: of Changes in the Arabidopsis RNA-binding proteome reveal novel stress response mechanisms

description: KEGG BlastKOALA ( https://www.kegg.jp/blastkoala/ ) pathways represented by the differentially abundant proteins responsive to drought stress (XLSX 44 kb)
DOI: 10.6084/m9.figshare.7986176.v1
title: Additional file 8: of Changes in the Arabidopsis RNA-binding proteome reveal novel stress response mechanisms

description: Inparalog and Orthologs clusters for drought stress responsive protein of Arabidopsis thaliana and selected organism mined using the Inparanoid database ( http://inparanoid.sbc.su.se/ ). (XLSX 308 kb)
DOI: 10.6084/m9.figshare.7986158
title: Additional file 5: of Changes in the Arabidopsis RNA-binding proteome reveal novel stress response mechanisms

description: Gene Ontology analysis of the significantly enriched drought stress responsive proteins performed using AgriGO software ( http://bioinfo.cau.edu.cn/agriGO/ ). (XLSX 49 kb)
DOI: 10.6084/m9.figshare.7986152
title: Additional file 4: of Changes in the Arabidopsis RNA-binding proteome reveal novel stress response mechanisms

description: Protein domains of the drought stress responsive proteins extracted from the pfam database ( http://pfam.xfam.org ; February 2017). (XLSX 154 kb)
DOI: 10.6084/m9.figshare.7986164
title: Additional file 6: of Changes in the Arabidopsis RNA-binding proteome reveal novel stress response mechanisms

description: Co-expression analysis of the most up - and/or down- regulated proteins mined using the ATTED database ( http://atted.jp/top_search.shtml#GeneTable ). (XLS 190 kb)
DOI: 10.6084/m9.figshare.7986158.v1
title: Additional file 5: of Changes in the Arabidopsis RNA-binding proteome reveal novel stress response mechanisms

description: Gene Ontology analysis of the significantly enriched drought stress responsive proteins performed using AgriGO software ( http://bioinfo.cau.edu.cn/agriGO/ ). (XLSX 49 kb)
DOI: 10.6084/m9.figshare.7986164.v1
title: Additional file 6: of Changes in the Arabidopsis RNA-binding proteome reveal novel stress response mechanisms

description: Co-expression analysis of the most up - and/or down- regulated proteins mined using the ATTED database ( http://atted.jp/top_search.shtml#GeneTable ). (XLS 190 kb)
DOI: 10.6084/m9.figshare.7986152.v1
title: Additional file 4: of Changes in the Arabidopsis RNA-binding proteome reveal novel stress response mechanisms

description: Protein domains of the drought stress responsive proteins extracted from the pfam database ( http://pfam.xfam.org ; February 2017). (XLSX 154 kb)
DOI: 10.6084/m9.figshare.12874025.v1
title: Additional file of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome
DOI: 10.6084/m9.figshare.12873995.v1
title: Additional file 1 of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file 1:Summary of available BAC libraries in forest tree species. (TXT 1 KB)
DOI: 10.6084/m9.figshare.12874025.v7
title: Additional file of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome
DOI: 10.6084/m9.figshare.12873977.v1
title: Additional file 10 of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file 10:Comparative genome mapping of the oak BESs with Populus trichocarpa. BESs were compared with P. trichocarpa genome using the cutoff at 1e-4, with a minimum identity of 90%. (TXT 515 bytes)
DOI: 10.6084/m9.figshare.12873977
title: Additional file 10 of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file 10:Comparative genome mapping of the oak BESs with Populus trichocarpa. BESs were compared with P. trichocarpa genome using the cutoff at 1e-4, with a minimum identity of 90%. (TXT 515 bytes)
DOI: 10.6084/m9.figshare.12874001.v1
title: Additional file 3 of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file 3:Sequences of the 41 oak- repeat elements (ORE) identified in the BESs dataset. (FASTA 6 KB)
DOI: 10.6084/m9.figshare.12874013.v1
title: Additional file 6 of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file 6:Sequences of the 1,823 oak BESs with a match in the Swissprot database (release 2010-04). (FASTA 1 MB)
DOI: 10.6084/m9.figshare.7986134
title: Additional file 1: of Changes in the Arabidopsis RNA-binding proteome reveal novel stress response mechanisms

description: mRNA-interacting proteins responsive to drought stress treatment at 1â h and 4â h treatment. (XLSX 103 kb)
DOI: 10.6084/m9.figshare.12874007.v1
title: Additional file 4 of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file 4:Characteristics of the 41 OREs identified in oak BESs. The file contains frequencies of OREs and homology searches results against oak sequences available in database (oak contigV1 and NR nucleic database release 3.10-11) (XLS 26 KB)
DOI: 10.6084/m9.figshare.12874022
title: Additional file 9 of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file 9:Comparative genome mapping of the oak BESs with Vitis vinifera. BESs were compared with V. vinifera genome using the cutoff at 1e-4, with a minimum identity of 90%. (TXT 3 KB)
DOI: 10.6084/m9.figshare.12874025.v10
title: Additional file of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome
DOI: 10.6084/m9.figshare.12874025.v9
title: Additional file of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome
DOI: 10.6084/m9.figshare.12874022.v1
title: Additional file 9 of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file 9:Comparative genome mapping of the oak BESs with Vitis vinifera. BESs were compared with V. vinifera genome using the cutoff at 1e-4, with a minimum identity of 90%. (TXT 3 KB)
DOI: 10.6084/m9.figshare.7986134.v1
title: Additional file 1: of Changes in the Arabidopsis RNA-binding proteome reveal novel stress response mechanisms

description: mRNA-interacting proteins responsive to drought stress treatment at 1â h and 4â h treatment. (XLSX 103 kb)
DOI: 10.6084/m9.figshare.12874007
title: Additional file 4 of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file 4:Characteristics of the 41 OREs identified in oak BESs. The file contains frequencies of OREs and homology searches results against oak sequences available in database (oak contigV1 and NR nucleic database release 3.10-11) (XLS 26 KB)
DOI: 10.6084/m9.figshare.12874013
title: Additional file 6 of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file 6:Sequences of the 1,823 oak BESs with a match in the Swissprot database (release 2010-04). (FASTA 1 MB)
DOI: 10.6084/m9.figshare.12873995
title: Additional file 1 of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file 1:Summary of available BAC libraries in forest tree species. (TXT 1 KB)
DOI: 10.6084/m9.figshare.12874001
title: Additional file 3 of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file 3:Sequences of the 41 oak- repeat elements (ORE) identified in the BESs dataset. (FASTA 6 KB)
DOI: 10.6084/m9.figshare.12874025.v12
title: Additional file of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome
DOI: 10.6084/m9.figshare.7986116
title: Additional file 8: of A splice donor variant in CCDC189 is associated with asthenospermia in Nordic Red dairy cattle

description: Candidate causal variants compatible with recessive inheritance of asthenospermia. Functional consequences of 126 candidate causal variants that were compatible with recessive inheritance of asthenospermia, i.e., they were homozygous for the alternate allele in two asthenospermic bulls and either heterozygous or homozygous for the reference allele in 237 healthy control animals. Variants were annotated using the Variant Effect Predictor tool. The quality of the sequence variant genotypes for both asthenospermic bulls is shown in columns 7 and 8. The number of heterozygous control animals (out of 237) is shown in column 9. The last column indicates the genotype distribution of 126 candidate causal variants (homozygous for the reference allele | heterozygous | homozygous for the alternate allele) in 2669 animals of the 1000 bull genomes dataset. (TXT 51 kb)
DOI: 10.6084/m9.figshare.12874025
title: Additional file of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome
DOI: 10.6084/m9.figshare.12874025.v15
title: Additional file of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome
DOI: 10.6084/m9.figshare.12874019.v1
title: Additional file 8 of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file 8:Functional annotation of 1,053 oak BESs significantly aligned with A. thaliana sequences in Swissprot. The table shows the GO terms associated with the coding regions identified on the BESs, annotated with B2GO. (TXT 121 KB)
DOI: 10.6084/m9.figshare.12874019
title: Additional file 8 of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file 8:Functional annotation of 1,053 oak BESs significantly aligned with A. thaliana sequences in Swissprot. The table shows the GO terms associated with the coding regions identified on the BESs, annotated with B2GO. (TXT 121 KB)
DOI: 10.6084/m9.figshare.7986116.v1
title: Additional file 8: of A splice donor variant in CCDC189 is associated with asthenospermia in Nordic Red dairy cattle

description: Candidate causal variants compatible with recessive inheritance of asthenospermia. Functional consequences of 126 candidate causal variants that were compatible with recessive inheritance of asthenospermia, i.e., they were homozygous for the alternate allele in two asthenospermic bulls and either heterozygous or homozygous for the reference allele in 237 healthy control animals. Variants were annotated using the Variant Effect Predictor tool. The quality of the sequence variant genotypes for both asthenospermic bulls is shown in columns 7 and 8. The number of heterozygous control animals (out of 237) is shown in column 9. The last column indicates the genotype distribution of 126 candidate causal variants (homozygous for the reference allele | heterozygous | homozygous for the alternate allele) in 2669 animals of the 1000 bull genomes dataset. (TXT 51 kb)
DOI: 10.6084/m9.figshare.12874025.v14
title: Additional file of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

description: Additional file of Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome
DOI: 10.6084/m9.figshare.7986098
title: Additional file 6: of A splice donor variant in CCDC189 is associated with asthenospermia in Nordic Red dairy cattle

description: Asthenospermia-associated haplotype. BovineSNP50 SNP identifiers, dbSNP identifiers, positions and asthenospermia-associated alleles of 45 adjacent SNPs of the BovineSNP50 Bead chip. The coding of the alleles is based on the Illumina TOP/BOT format. The chromosomal position of the SNP corresponds to the UMD3.1 assembly of the bovine genome. (CSV 2 kb)
DOI: 10.6084/m9.figshare.7986098.v1
title: Additional file 6: of A splice donor variant in CCDC189 is associated with asthenospermia in Nordic Red dairy cattle

description: Asthenospermia-associated haplotype. BovineSNP50 SNP identifiers, dbSNP identifiers, positions and asthenospermia-associated alleles of 45 adjacent SNPs of the BovineSNP50 Bead chip. The coding of the alleles is based on the Illumina TOP/BOT format. The chromosomal position of the SNP corresponds to the UMD3.1 assembly of the bovine genome. (CSV 2 kb)
DOI: 10.6084/m9.figshare.7986086
title: Additional file 5: of A splice donor variant in CCDC189 is associated with asthenospermia in Nordic Red dairy cattle

description: R script to identify IBD segments in two asthenospermic bulls. R script to visualize runs of homozygosity in the genotype data of two asthenospermic bulls. This program uses as input the files provided as Additional file 4: File S1. Please note that this R script envokes the algorithm implemented in plink (version 1.9) to identify runs of homozygosity. (TXT 4 kb)
DOI: 10.6084/m9.figshare.7986083
title: Additional file 4: of A splice donor variant in CCDC189 is associated with asthenospermia in Nordic Red dairy cattle

description: Genotypes of two asthenospermic bulls. Genotypes at 41,594 SNPs for two asthenospermic bulls in plink binary format. The positions of the SNP correspond to the UMD3.1 assembly of the bovine genome. (ZIP 459 kb)
DOI: 10.6084/m9.figshare.7986086.v1
title: Additional file 5: of A splice donor variant in CCDC189 is associated with asthenospermia in Nordic Red dairy cattle

description: R script to identify IBD segments in two asthenospermic bulls. R script to visualize runs of homozygosity in the genotype data of two asthenospermic bulls. This program uses as input the files provided as Additional file 4: File S1. Please note that this R script envokes the algorithm implemented in plink (version 1.9) to identify runs of homozygosity. (TXT 4 kb)
DOI: 10.6084/m9.figshare.7986083.v1
title: Additional file 4: of A splice donor variant in CCDC189 is associated with asthenospermia in Nordic Red dairy cattle

description: Genotypes of two asthenospermic bulls. Genotypes at 41,594 SNPs for two asthenospermic bulls in plink binary format. The positions of the SNP correspond to the UMD3.1 assembly of the bovine genome. (ZIP 459 kb)
DOI: 10.6084/m9.figshare.7986035
title: Additional file 8: of Comparative proteomics analysis of peanut roots reveals differential mechanisms of cadmium detoxification and translocation between two cultivars differing in cadmium accumulation

description: Table S7. The primers used in RT-qPCR analysis. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7986029
title: Additional file 7: of Comparative proteomics analysis of peanut roots reveals differential mechanisms of cadmium detoxification and translocation between two cultivars differing in cadmium accumulation

description: Table S6. Differentially expressed proteins involved in lignin biosynthesis. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7986035.v1
title: Additional file 8: of Comparative proteomics analysis of peanut roots reveals differential mechanisms of cadmium detoxification and translocation between two cultivars differing in cadmium accumulation

description: Table S7. The primers used in RT-qPCR analysis. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7986029.v1
title: Additional file 7: of Comparative proteomics analysis of peanut roots reveals differential mechanisms of cadmium detoxification and translocation between two cultivars differing in cadmium accumulation

description: Table S6. Differentially expressed proteins involved in lignin biosynthesis. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7986014
title: Additional file 5: of Comparative proteomics analysis of peanut roots reveals differential mechanisms of cadmium detoxification and translocation between two cultivars differing in cadmium accumulation

description: Table S4. Differentially expressed proteins related to ion transporters. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.7986020
title: Additional file 6: of Comparative proteomics analysis of peanut roots reveals differential mechanisms of cadmium detoxification and translocation between two cultivars differing in cadmium accumulation

description: Table S5. Differentially expressed proteins involved in cell wall metabolism in two peanut cultivars. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.7986014.v1
title: Additional file 5: of Comparative proteomics analysis of peanut roots reveals differential mechanisms of cadmium detoxification and translocation between two cultivars differing in cadmium accumulation

description: Table S4. Differentially expressed proteins related to ion transporters. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.7986020.v1
title: Additional file 6: of Comparative proteomics analysis of peanut roots reveals differential mechanisms of cadmium detoxification and translocation between two cultivars differing in cadmium accumulation

description: Table S5. Differentially expressed proteins involved in cell wall metabolism in two peanut cultivars. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.7986005
title: Additional file 3: of Comparative proteomics analysis of peanut roots reveals differential mechanisms of cadmium detoxification and translocation between two cultivars differing in cadmium accumulation

description: Table S2. Significantly enriched GO terms for the DEPs. With P-value
DOI: 10.6084/m9.figshare.7986008
title: Additional file 4: of Comparative proteomics analysis of peanut roots reveals differential mechanisms of cadmium detoxification and translocation between two cultivars differing in cadmium accumulation

description: Table S3. Most enriched GO terms for the DEPs. With P-value
DOI: 10.6084/m9.figshare.7985996
title: Additional file 2: of Comparative proteomics analysis of peanut roots reveals differential mechanisms of cadmium detoxification and translocation between two cultivars differing in cadmium accumulation

description: Table S1. List of Cd-induced differentially expressed proteins in roots of two peanut cultivars. (XLSX 3414 kb)
DOI: 10.6084/m9.figshare.7986005.v1
title: Additional file 3: of Comparative proteomics analysis of peanut roots reveals differential mechanisms of cadmium detoxification and translocation between two cultivars differing in cadmium accumulation

description: Table S2. Significantly enriched GO terms for the DEPs. With P-value
DOI: 10.6084/m9.figshare.7985996.v1
title: Additional file 2: of Comparative proteomics analysis of peanut roots reveals differential mechanisms of cadmium detoxification and translocation between two cultivars differing in cadmium accumulation

description: Table S1. List of Cd-induced differentially expressed proteins in roots of two peanut cultivars. (XLSX 3414 kb)
DOI: 10.6084/m9.figshare.7986008.v1
title: Additional file 4: of Comparative proteomics analysis of peanut roots reveals differential mechanisms of cadmium detoxification and translocation between two cultivars differing in cadmium accumulation

description: Table S3. Most enriched GO terms for the DEPs. With P-value
DOI: 10.6084/m9.figshare.7985972
title: Additional file 3 of A systematic review of necrotising fasciitis in children from its first description in 1930 to 2018

description: Dataset for the pooled cases. Complete database of all cases extracted from the literature and their coding for the respective items. (XLSX 91 kb)
DOI: 10.6084/m9.figshare.7985972.v1
title: Additional file 3 of A systematic review of necrotising fasciitis in children from its first description in 1930 to 2018

description: Dataset for the pooled cases. Complete database of all cases extracted from the literature and their coding for the respective items. (XLSX 91 kb)