cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16940342
title: Benchmark study of NEMOH vs WAMIT for the OC4-DeepCwind semi-submersible FOWT

description: This repository presents a benchmark study comparing two potential-flow Boundary Element Method (BEM) panel solvers, NEMOH and WAMIT, for the OC4-DeepCwind semi-submersible platform. The hydrodynamic analysis was conducted using NEMOH and benchmarked against the published WAMIT data for the OC4 test case available from the OpenFAST repository. NEMOH is an open-source BEM code developed to compute wave loads on offshore structures, including added mass, radiation damping, and diffraction forces. Notably, NEMOH is the only open-source solver that offers second-order solutions, which makes it suitable for this study.

The primary motivation for this work is to integrate an open-source BEM solver like NEMOH with OpenFAST for time-domain simulations under combined wave and wind conditions. The WAMIT OC4 hydrodynamic data include first-order results across different wave headings, while the second-order forces are only available for head seas (0 degrees). Therefore, this study aims to provide a complete hydrodynamic solution, including first- and second-order data for a range of wave headings from 0 to 180 degrees, leveraging NEMOH.

The comparison results show good overall agreement between NEMOH and the WAMIT reference data for the 0 wave heading.  The second-order solution followed the overall trends seen in WAMIT but showed greater deviations compared to the first-order data. More details in the attached report. 

NEMOH datasets are attached as WAMIT-format converted using BEMRosetta for 0-180 wave directions. The files needed as inputs for OpenFAST are .1 (frequency-dependent hydrodynamic added-mass and damping matrix from the wave radiation problem). The .3 file contains the frequency- and direction-dependent first-order wave-excitation loads. The .hst file contains the hydrostatic restoring (stiffness) matrix. The 12.d and 12.s second-order difference-frequency and second-order sum-frequency, respectively.
DOI: 10.15468/dl.6v3y2b
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Artemisia ludoviciana",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015544-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u35cwm
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Artemisia ludoviciana",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 26 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015545-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30000622.v2
title: Raw data of "Novel avian metapneumovirus subtype C variant is a newly emerged pathogen causing hydrosalpinx fluid syndrome in Sheldrake ducks in China"

description: Since 2021, an epidemic disease characterized with hydrosalpinx fluid syndrome (HFS) has been circulating in the laying Sheldrake ducks in China, which seriously endangers the healthy development of the duck industry. The causative agent of this disease has been traced to avian metapneumovirus subtype C (aMPV/C), known to cause acute upper respiratory tract infections and egg-drop in poultry. To date, no reports have been made to isolate and characterize aMPV/C infection in Sheldrake ducks in China. Here, a strain of virus, designated aMPV-FJ21, was successfully isolated from the diseased ducks exhibiting HFS. Transmission electron microscopy revealed that the virus is an enveloped particle with a spherical or pleomorphic morphology. Indirect immunofluorescence assays demonstrated that the aMPV-FJ21 strain had an obvious reactive activity with the ploy-antibody against aMPV/C F protein. The complete genome of aMPV-FJ21 was determined to be 14,149 nucleotides in length. Notably, the G protein of this strain showed only 55.6%-78.7% identical to that of other aMPV/C reference strains. Phylogenetic analysis indicated that aMPV-FJ21 forms a distinct lineage within the aMPV/C group and is genetically distant from the North American and Eurasian lineages, suggesting that it may represent a novel genetic lineage. In vivo infection of laying Sheldrake ducks with aMPV-FJ21 reproduced the typical clinical symptoms and pathological lesions observed in the original infected cases. Altogether, we had isolated a novel aMPV/C variant from Sheldrake ducks exhibiting HFS, distinct from previously reported strains, and provided the first evidence confirming its role as the causative agent of HFS in ducks.
DOI: 10.15468/dl.554vkz
title: Occurrence Download

description: A dataset containing 219079 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tragopogon pratensis",
 "Year 1956-2022"
 ]
}

 The dataset includes 219079 records from 1890 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015513-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/r3ry-vnnn
title: Measurement of Heavy metals at Birkenes

description: Measurement of Heavy metals at Birkenes
DOI: 10.48597/rj7r-4q4r
title: Measurement of Heavy metals at Birkenes

description: Measurement of Heavy metals at Birkenes
DOI: 10.5281/zenodo.10727690
title: Erwinia pyrifoliae sequence reads

description: E. pyrifoliae sequence reads originally from https://www.ncbi.nlm.nih.gov/search/all/?term=SRR1691104

Uploaded here to support a genome assembly tutorial using Galaxy Server.
DOI: 10.5281/zenodo.10727691
title: Erwinia pyrifoliae sequence reads

description: E. pyrifoliae sequence reads originally from https://www.ncbi.nlm.nih.gov/search/all/?term=SRR1691104

Uploaded here to support a genome assembly tutorial using Galaxy Server.
DOI: 10.48597/skja-npqx
title: Measurement of Sum_ammonia_and_ammonium at Villum Research Station, Station Nord

description: Measurement of Sum_ammonia_and_ammonium at Villum Research Station, Station Nord
DOI: 10.48597/t55c-tg2a
title: Measurement of Sulphur_dioxide at Illmitz

description: Measurement of Sulphur_dioxide at Illmitz
DOI: 10.48597/te63-umzq
title: Measurement of Heavy metals and inorganics in air and particle phase at Storhofdi

description: Measurement of Heavy metals and inorganics in air and particle phase at Storhofdi
DOI: 10.48597/tz73-h6zt
title: Measurement of Precipitation_amount at Reykjavik

description: Measurement of Precipitation_amount at Reykjavik
DOI: 10.48597/ubsy-nenn
title: Measurement of Precipitation_amount at Lista

description: Measurement of Precipitation_amount at Lista
DOI: 10.48597/ukej-hd86
title: Measurement of Precipitation_amount at Karpdalen

description: Measurement of Precipitation_amount at Karpdalen
DOI: 10.48597/v8f4-9maa
title: Measurement of Precipitation_amount at Karpdalen

description: Measurement of Precipitation_amount at Karpdalen
DOI: 10.48597/vb6c-m979
title: Measurement of Sum_ammonia_and_ammonium at Villum Research Station, Station Nord

description: Measurement of Sum_ammonia_and_ammonium at Villum Research Station, Station Nord
DOI: 10.48597/vwvy-gvce
title: Measurement of VOC (hydrocarbons) at Rucava

description: Measurement of VOC (hydrocarbons) at Rucava
DOI: 10.48597/w4ar-s64p
title: Measurement of Sum_ammonia_and_ammonium at Villum Research Station, Station Nord

description: Measurement of Sum_ammonia_and_ammonium at Villum Research Station, Station Nord
DOI: 10.48597/xeu2-4ssx
title: Measurement of Precipitation_amount at Lista

description: Measurement of Precipitation_amount at Lista
DOI: 10.48597/ybbn-gu82
title: Measurement of Heavy metals at Villum Research Station, Station Nord

description: Measurement of Heavy metals at Villum Research Station, Station Nord
DOI: 10.48597/yck2-xzcm
title: Measurement of Heavy metals at Jergul

description: Measurement of Heavy metals at Jergul
DOI: 10.48597/yksg-ntzm
title: Measurement of Heavy metals at Birkenes

description: Measurement of Heavy metals at Birkenes
DOI: 10.48597/z6c2-yvfk
title: Measurement of Chloride and heavy metals at Storhofdi

description: Measurement of Chloride and heavy metals at Storhofdi
DOI: 10.48597/zgh4-ty7s
title: Measurement of Heavy metals at Karpdalen

description: Measurement of Heavy metals at Karpdalen
DOI: 10.48597/28z3-znq6
title: Measurement of Phenanthrene at Zmeiny Island

description: Measurement of Phenanthrene at Zmeiny Island
DOI: 10.48597/296d-g2x9
title: Measurement of PAHs (polycyclic aromatic hydrocarbons) at Birkenes

description: Measurement of PAHs (polycyclic aromatic hydrocarbons) at Birkenes
DOI: 10.48597/2f7n-bm8h
title: Measurement of Chrysene at Iskrba

description: Measurement of Chrysene at Iskrba
DOI: 10.48597/2nm5-89ez
title: Measurement of Chrysene at Zmeiny Island

description: Measurement of Chrysene at Zmeiny Island
DOI: 10.5281/zenodo.10565147
title: Development of open access publishing in EU member states

description: Code and aggregated data and figure belonging to Chapter 6 'Developing and diversity of scientific publishing' of the report: European Commission, Directorate-General for Research and Innovation, Kramer, B., Study on scientific publishing in Europe – Development, diversity, and transparency of costs, Publications Office of the European Union, 2024, https://data.europa.eu/doi/10.2777/89349For this part of the study, we used the underlying data and analysis infrastructure provided by Curtin Open Knowledge Initiative (COKI) to generate a modified view on the data in the COKI Open Access Dashboard (https://open.coki.ac/)  for the 30 countries in scope for this study*, using SQL queries in Google Big Query. Specifically, we limited our corpus to publication with a DOI and with type ‘journal-article’ in OpenAlex (which at time of sampling corresponded to Crossref’s ‘journal-article’ type), published between 2012 and 2022, and with at least one affiliation belonging to the countries included in the study. We then matched DOIs back to Unpaywall and ISSNs back to DOAJ to get open access information and assign publications to one of the following categories:

·     in full OA journal (in DOAJ, non-APC-based)

·     in full OA journal (in DOAJ, APC-based)

·     in full OA journal (not in DOAJ)

·     open in subscription journal (open license)

·     open in subscription journal (no open license)

·     open in subscription journal (no open license) & in repository (accepted/published version)

·     in repository only (accepted/published version)

·     in repository only (submitted version)

·     closed

The results give an approximation of the development over time of the use of different OA models in the various countries (Fig 11 - included in this Zenodo record). It should be noted that, like most open access analyses, this is a retrospective view of current open access availability of publications from a range of publication years, not a reflection of open access availability at the time of publication. Currently available information in Unpaywall does allow for an analysis of embargo times (esp. for repository-based OA), but this was outside the scope of this study. As a final methodological remark, fractionalised counting of publications was not applied (i.e. a publication with one author from Spain and one from Austria is counted as one publication both Spain and Austria).  *Geographical scope is restricted to EU Member States with the addition of a number of countries for which information on OA policies and national / consortial agreements is readily available: Norway, Switzerland and the United Kingdom. These countries, in particular, also have long-standing mandates and OA policies that will contribute to the understanding of how OA publishing is financed across Europe.
DOI: 10.5281/zenodo.10565148
title: Development of open access publishing in EU member states

description: Code and aggregated data and figure belonging to Chapter 6 'Developing and diversity of scientific publishing' of the report: European Commission, Directorate-General for Research and Innovation, Kramer, B., Study on scientific publishing in Europe – Development, diversity, and transparency of costs, Publications Office of the European Union, 2024, https://data.europa.eu/doi/10.2777/89349For this part of the study, we used the underlying data and analysis infrastructure provided by Curtin Open Knowledge Initiative (COKI) to generate a modified view on the data in the COKI Open Access Dashboard (https://open.coki.ac/)  for the 30 countries in scope for this study*, using SQL queries in Google Big Query. Specifically, we limited our corpus to publication with a DOI and with type ‘journal-article’ in OpenAlex (which at time of sampling corresponded to Crossref’s ‘journal-article’ type), published between 2012 and 2022, and with at least one affiliation belonging to the countries included in the study. We then matched DOIs back to Unpaywall and ISSNs back to DOAJ to get open access information and assign publications to one of the following categories:

·     in full OA journal (in DOAJ, non-APC-based)

·     in full OA journal (in DOAJ, APC-based)

·     in full OA journal (not in DOAJ)

·     open in subscription journal (open license)

·     open in subscription journal (no open license)

·     open in subscription journal (no open license) & in repository (accepted/published version)

·     in repository only (accepted/published version)

·     in repository only (submitted version)

·     closed

The results give an approximation of the development over time of the use of different OA models in the various countries (Fig 11 - included in this Zenodo record). It should be noted that, like most open access analyses, this is a retrospective view of current open access availability of publications from a range of publication years, not a reflection of open access availability at the time of publication. Currently available information in Unpaywall does allow for an analysis of embargo times (esp. for repository-based OA), but this was outside the scope of this study. As a final methodological remark, fractionalised counting of publications was not applied (i.e. a publication with one author from Spain and one from Austria is counted as one publication both Spain and Austria).  *Geographical scope is restricted to EU Member States with the addition of a number of countries for which information on OA policies and national / consortial agreements is readily available: Norway, Switzerland and the United Kingdom. These countries, in particular, also have long-standing mandates and OA policies that will contribute to the understanding of how OA publishing is financed across Europe.
DOI: 10.48597/2upd-sgkt
title: Measurement of Precipitation_amount_off at Patum Thani

description: Measurement of Precipitation_amount_off at Patum Thani
DOI: 10.48597/3wxd-n7wm
title: Measurement of Pp_DDT at Zmeiny Island

description: Measurement of Pp_DDT at Zmeiny Island
DOI: 10.48597/4eaw-wjbu
title: Measurement of PM mass at Hurdal

description: Measurement of PM mass at Hurdal
DOI: 10.48597/5efj-3mff
title: Measurement of Meteorology at Vorhegg

description: Measurement of Meteorology at Vorhegg
DOI: 10.48597/5kss-nyfk
title: Measurement of PCB_180 at Zmeiny Island

description: Measurement of PCB_180 at Zmeiny Island
DOI: 10.48597/5n28-yw46
title: Measurement of Chrysene at Starina

description: Measurement of Chrysene at Starina
DOI: 10.48597/5tmt-s9wn
title: Measurement of Nitrogen_dioxide at Amberd

description: Measurement of Nitrogen_dioxide at Amberd
DOI: 10.48597/5y4b-f5zj
title: Measurement of Inorganics in air and particle phase at Birkenes II

description: Measurement of Inorganics in air and particle phase at Birkenes II
DOI: 10.48597/6yzr-wtsz
title: Measurement of Inorganics in air and particle phase at Andøya

description: Measurement of Inorganics in air and particle phase at Andøya
DOI: 10.48597/7cfa-v34c
title: Measurement of Trans_NO at Zmeiny Island

description: Measurement of Trans_NO at Zmeiny Island
DOI: 10.48597/97np-6g2s
title: Measurement of Chrysene at Vindeln

description: Measurement of Chrysene at Vindeln
DOI: 10.48597/98ae-y5ua
title: Measurement of Benz_a_anthracene at Iskrba

description: Measurement of Benz_a_anthracene at Iskrba
DOI: 10.48597/9jh4-ayat
title: Measurement of Pyrene at Zmeiny Island

description: Measurement of Pyrene at Zmeiny Island
DOI: 10.48597/9ugc-ebu6
title: Measurement of Inorganics in air and particle phase at Payerne

description: Measurement of Inorganics in air and particle phase at Payerne
DOI: 10.48597/9v7p-evtj
title: Measurement of Inorganics in precipitation at Pedersker

description: Measurement of Inorganics in precipitation at Pedersker
DOI: 10.48597/a5r9-thrw
title: Measurement of Inorganics in precipitation at Bangkok

description: Measurement of Inorganics in precipitation at Bangkok
DOI: 10.48597/a7aj-ugj9
title: Measurement of Dinitrogen_monoxide at FRA-CCS

description: Measurement of Dinitrogen_monoxide at FRA-CCS
DOI: 10.48597/aace-3f2u
title: Measurement of Aerosol_extinction_coefficient at Leipzig

description: Measurement of Aerosol_extinction_coefficient at Leipzig
DOI: 10.48597/abwe-bzw9
title: Measurement of Precipitation_amount at Doñana

description: Measurement of Precipitation_amount at Doñana
DOI: 10.48597/adga-2zt9
title: Measurement of Inorganics in precipitation at Birkenes

description: Measurement of Inorganics in precipitation at Birkenes
DOI: 10.48597/afuu-vjqu
title: Measurement of PCB_101 at Zmeiny Island

description: Measurement of PCB_101 at Zmeiny Island
DOI: 10.48597/aqxv-44a9
title: Measurement of Sulphate_corrected at Doñana

description: Measurement of Sulphate_corrected at Doñana
DOI: 10.48597/b9et-mcah
title: Measurement of PCB_138 at Zmeiny Island

description: Measurement of PCB_138 at Zmeiny Island
DOI: 10.48597/crn5-a3uj
title: Measurement of Dinitrogen_monoxide at CPT-FRA

description: Measurement of Dinitrogen_monoxide at CPT-FRA
DOI: 10.48597/cuvc-y3zk
title: Measurement of Meteorology at Zoebelboden

description: Measurement of Meteorology at Zoebelboden
DOI: 10.48597/cvuj-ems4
title: Measurement of Sulphate_corrected at De Zilk

description: Measurement of Sulphate_corrected at De Zilk
DOI: 10.48597/cyvq-c2v7
title: Measurement of Benzo_a_pyrene at Zmeiny Island

description: Measurement of Benzo_a_pyrene at Zmeiny Island
DOI: 10.48597/czab-48vv
title: Measurement of Pressure at FRA-CCS

description: Measurement of Pressure at FRA-CCS
DOI: 10.48597/d729-naxu
title: Measurement of Fluoranthene at Zmeiny Island

description: Measurement of Fluoranthene at Zmeiny Island
DOI: 10.48597/db7k-pzj5
title: Measurement of Pp_DDD at Zmeiny Island

description: Measurement of Pp_DDD at Zmeiny Island
DOI: 10.48597/dh3r-b4q6
title: Measurement of Precipitation_amount_off at Samut Prakan

description: Measurement of Precipitation_amount_off at Samut Prakan
DOI: 10.48597/dr57-j4g9
title: Measurement of Precipitation_amount_off at Bangkok

description: Measurement of Precipitation_amount_off at Bangkok
DOI: 10.48597/e59t-rq98
title: Measurement of Pyrene at Starina

description: Measurement of Pyrene at Starina
DOI: 10.48597/f488-trqz
title: Measurement of Inorganics in air and particle phase at Troll

description: Measurement of Inorganics in air and particle phase at Troll
DOI: 10.48597/f4a5-2y76
title: Measurement of Acetic_acid, formic_acid and inorganics in precipitation at Bangkok

description: Measurement of Acetic_acid, formic_acid and inorganics in precipitation at Bangkok
DOI: 10.48597/fj2s-kn2m
title: Measurement of PCB_118 at Zmeiny Island

description: Measurement of PCB_118 at Zmeiny Island
DOI: 10.48597/ft48-as84
title: Measurement of Sulphate_corrected at Vavihill

description: Measurement of Sulphate_corrected at Vavihill
DOI: 10.48597/fvk7-vrtr
title: Measurement of Inorganics in precipitation at Puntijarka

description: Measurement of Inorganics in precipitation at Puntijarka
DOI: 10.48597/g62x-7xaq
title: Measurement of Inorganics in air and particle phase at Andøya

description: Measurement of Inorganics in air and particle phase at Andøya
DOI: 10.48597/g7ds-y7hf
title: Measurement of Anthracene at Starina

description: Measurement of Anthracene at Starina
DOI: 10.48597/gb66-3js7
title: Measurement of Carbon_dioxide at CPT-FRA

description: Measurement of Carbon_dioxide at CPT-FRA
DOI: 10.48597/gc9b-egqy
title: Measurement of Pyrene at Vindeln

description: Measurement of Pyrene at Vindeln
DOI: 10.48597/gcg9-k225
title: Measurement of PBDEs (polybrominated diphenyl ethers) at Birkenes II

description: Measurement of PBDEs (polybrominated diphenyl ethers) at Birkenes II
DOI: 10.48597/gm8t-cyb6
title: Measurement of Inorganics in precipitation at Chiang Mai - Mae Hia

description: Measurement of Inorganics in precipitation at Chiang Mai - Mae Hia
DOI: 10.48597/h7q3-xjx5
title: Measurement of Anthracene at Abisko

description: Measurement of Anthracene at Abisko
DOI: 10.48597/hd8y-69gu
title: Measurement of Pyrene at Abisko

description: Measurement of Pyrene at Abisko
DOI: 10.48597/j57z-wx5k
title: Measurement of Inorganics in precipitation at Samut Prakan

description: Measurement of Inorganics in precipitation at Samut Prakan
DOI: 10.48597/j7ek-yn82
title: Measurement of Inorganics in precipitation at Aspvreten

description: Measurement of Inorganics in precipitation at Aspvreten
DOI: 10.48597/jq3x-tuta
title: Measurement of Alpha_HCH at Zmeiny Island

description: Measurement of Alpha_HCH at Zmeiny Island
DOI: 10.48597/ke2x-c6dh
title: Measurement of Precipitation_amount_off at Vachiralongkorn Dam - Khanchanaburi

description: Measurement of Precipitation_amount_off at Vachiralongkorn Dam - Khanchanaburi
DOI: 10.48597/ntjh-fjvr
title: Measurement of Benz_a_anthracene at Abisko

description: Measurement of Benz_a_anthracene at Abisko
DOI: 10.48597/pdvr-c7cu
title: Measurement of Inorganics in precipitation at Patum Thani

description: Measurement of Inorganics in precipitation at Patum Thani
DOI: 10.48597/q322-dy53
title: Measurement of Precipitation_amount_off at Chiang Mai - Mae Hia

description: Measurement of Precipitation_amount_off at Chiang Mai - Mae Hia
DOI: 10.48597/qbsb-8r5m
title: Measurement of Inorganics in air and particle phase at La Tardière

description: Measurement of Inorganics in air and particle phase at La Tardière
DOI: 10.48597/qwjm-vjzx
title: Measurement of Inorganics in precipitation at Andøya

description: Measurement of Inorganics in precipitation at Andøya
DOI: 10.48597/rdjd-zdr5
title: Measurement of Inorganics in precipitation at Pedersker

description: Measurement of Inorganics in precipitation at Pedersker
DOI: 10.48597/rfev-r94c
title: Measurement of Cis_CD at Zmeiny Island

description: Measurement of Cis_CD at Zmeiny Island
DOI: 10.48597/rgsb-jf8p
title: Measurement of Benz_a_anthracene at Zmeiny Island

description: Measurement of Benz_a_anthracene at Zmeiny Island
DOI: 10.48597/rqfd-jdnf
title: Measurement of Ozone at Finokalia

description: Measurement of Ozone at Finokalia
DOI: 10.48597/rtnw-8dex
title: Measurement of Aerosol_extinction_coefficient at Cabauw Zijdeweg

description: Measurement of Aerosol_extinction_coefficient at Cabauw Zijdeweg
DOI: 10.48597/ruux-6gae
title: Measurement of PM mass at Birkenes II

description: Measurement of PM mass at Birkenes II
DOI: 10.48597/rysz-27vh
title: Measurement of Benz_a_anthracene at Starina

description: Measurement of Benz_a_anthracene at Starina
DOI: 10.48597/s236-vm3t
title: Measurement of Methane at CPT-FRA

description: Measurement of Methane at CPT-FRA
DOI: 10.48597/s2rm-h9hv
title: Measurement of Op_DDT at Zmeiny Island

description: Measurement of Op_DDT at Zmeiny Island