cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1441324
title: Subject 01

description: Raw data of the participant 01 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441323
title: Subject 02

description: Raw data of the participant 02 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441312
title: Subject 10

description: Raw data of the participant 10 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441323.v1
title: Subject 02

description: Raw data of the participant 02 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441326.v2
title: Brain regions associated to a kinesthetic illusion evoked by watching a video of one's own moving hand

description: All fMRI raw data of the 14 participants in the Illusion experiment by Fuminari et al, PlosOne 2015
DOI: 10.6084/m9.figshare.1441326.v1
title: All subjects

description: All fMRI raw data of the 14 participants in the Illusion experiment by Fuminari et al, PlosOne 2015
DOI: 10.6084/m9.figshare.1441300
title: Subject 09

description: Raw data of the participant 09 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441311
title: Subject 11

description: Raw data of the participant 11 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441312.v1
title: Subject 10

description: Raw data of the participant 10 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441324.v2
title: Subject 01

description: Raw data of the participant 01 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441299
title: Subject 08

description: Raw data of the participant 08 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441300.v1
title: Subject 09

description: Raw data of the participant 09 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441324.v1
title: Subkect 01

description: Raw data of the participant 01 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441298
title: Subject 04

description: Raw data of the participant 04 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441299.v1
title: Subject 08

description: Raw data of the participant 08 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441284
title: Subject 05

description: Raw data of the participant 05 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441285
title: Subject 07

description: Raw data of the participant 07 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441298.v1
title: Subject 04

description: Raw data of the participant 04 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441311.v1
title: Subject 11

description: Raw data of the participant 11 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441268
title: Subject 03

description: Raw data of the participant 03 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441284.v1
title: Subject 05

description: Raw data of the participant 05 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441285.v1
title: Subject 07

description: Raw data of the participant 07 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441258
title: Subject 14

description: Raw data of the participant 14 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441262
title: Subject 13

description: Raw data of aprticipant 13 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441268.v1
title: Subject 03

description: Raw data of the participant 03 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441256
title: Subject16

description: Functional raw data of the Participant 16 of the Illusion Experiment
DOI: 10.6084/m9.figshare.1441257
title: Subject 15

description: Functional raw data of the subject 15 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441262.v1
title: Subject 13

description: Raw data of aprticipant 13 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441258.v1
title: Subject 14

description: Raw data of the participant 14 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441245
title: Illusion04 - Func4

description: Subject4- Run4- Functional raw images from Fuminari et al experiment published in PlosOne
DOI: 10.6084/m9.figshare.1441246
title: World Squid Fisheries

description: Some 290 species of squids comprise the order Teuthida that belongs to the molluscan Class Cephalopoda. Of these, about 30–40 squid species have substantial commercial importance around the world. Squid fisheries make a rather small contribution to world landings from capture fisheries relative to that of fish, but the proportion has increased steadily over the last decade, with some signs of recent leveling off. The present overview describes all substantial squid fisheries around the globe. The main ecological and biological features of exploited stocks, and key aspects of fisheries management are presented for each commercial species of squid worldwide. The history and fishing methods used in squid fisheries are also described. Special attention has been paid to interactions between squid fisheries and marine ecosystems including the effects of fishing gear, the role of squid in ecosystem change induced by overfishing on groundfish, and ecosystem-based fishery management.
DOI: 10.6084/m9.figshare.1441255
title: Books Dataset

description: This database contains information about books gathered with help of Google Books API. The database contains 7 different tables where 3 of them are only to relate the other tables together. Tables: Books contains 1062 records. Authors contains 1595 records. Categories 109 records. Metadata 37 records. MD5 (GBooks_2015-06-09.sql) = bfd09094d0e123e668b2e58332b1a98b
DOI: 10.6084/m9.figshare.1441257.v1
title: Subject 15

description: Functional raw data of the subject 15 in the Illusion experiment
DOI: 10.6084/m9.figshare.1441256.v1
title: Subject16

description: Functional raw data of the Participant 16 of the Illusion Experiment
DOI: 10.6084/m9.figshare.1441244
title: illusion04-Func2

description: Func2 subject 4
DOI: 10.6084/m9.figshare.1441246.v2
title: World Squid Fisheries

description: Some 290 species of squids comprise the order Teuthida that belongs to the molluscan Class Cephalopoda. Of these, about 30–40 squid species have substantial commercial importance around the world. Squid fisheries make a rather small contribution to world landings from capture fisheries relative to that of fish, but the proportion has increased steadily over the last decade, with some signs of recent leveling off. The present overview describes all substantial squid fisheries around the globe. The main ecological and biological features of exploited stocks, and key aspects of fisheries management are presented for each commercial species of squid worldwide. The history and fishing methods used in squid fisheries are also described. Special attention has been paid to interactions between squid fisheries and marine ecosystems including the effects of fishing gear, the role of squid in ecosystem change induced by overfishing on groundfish, and ecosystem-based fishery management.
DOI: 10.6084/m9.figshare.1441243
title: illusion04_Func1

description: Subject4_Func1
DOI: 10.6084/m9.figshare.1441242
title: Illusion03_func5

description: Subject3_func5
DOI: 10.6084/m9.figshare.1441243.v2
title: illusion04_Func1

description: Subject4_Func1
DOI: 10.6084/m9.figshare.1441246.v1
title: World Squid Fisheries

description: Some 290 species of squids comprise the order Teuthida that belongs to the molluscan Class Cephalopoda. Of these, about 30–40 squid species have substantial commercial importance around the world. Squid fisheries make a rather small contribution to world landings from capture fisheries relative to that of fish, but the proportion has increased steadily over the last decade, with some signs of recent leveling off. The present overview describes all substantial squid fisheries around the globe. The main ecological and biological features of exploited stocks, and key aspects of fisheries management are presented for each commercial species of squid worldwide. The history and fishing methods used in squid fisheries are also described. Special attention has been paid to interactions between squid fisheries and marine ecosystems including the effects of fishing gear, the role of squid in ecosystem change induced by overfishing on groundfish, and ecosystem-based fishery management.
DOI: 10.6084/m9.figshare.1441210
title: Empirical and simulated adjustments of composite likelihood ratio statistics

description: Composite likelihood inference has gained much popularity thanks to its computational manageability and its theoretical properties. Unfortunately, performing composite likelihood ratio tests is inconvenient because of their awkward asymptotic distribution. There are many proposals for adjusting composite likelihood ratio tests in order to recover an asymptotic chi-square distribution, but they all depend on the sensitivity and variability matrices. The same is true for Wald-type and score-type counterparts. In realistic applications, sensitivity and variability matrices usually need to be estimated, but there are no comparisons of the performance of composite likelihood-based statistics in such an instance. A comparison of the accuracy of inference based on the statistics considering two methods typically employed for estimation of sensitivity and variability matrices, namely an empirical method that exploits independent observations, and Monte Carlo simulation, is performed. The results in two examples involving the pairwise likelihood show that a very large number of independent observations should be available in order to obtain accurate coverages using empirical estimation, while limited simulation from the full model provides accurate results regardless of the availability of independent observations. This suggests the latter as a default choice, whenever simulation from the model is possible.
DOI: 10.6084/m9.figshare.1441243.v1
title: Subject4_Func1

description: Subject4_Func1
DOI: 10.6084/m9.figshare.1441242.v2
title: Illusion03_func5

description: Subject3_func5
DOI: 10.6084/m9.figshare.1441244.v1
title: Illusion experiment

description: Func2 subject 4
DOI: 10.6084/m9.figshare.1441245.v1
title: Illusion experiment

description: Run4- Functional raw images from Fuminari et al experiment published in PlosOne
DOI: 10.6084/m9.figshare.1441210.v1
title: Empirical and simulated adjustments of composite likelihood ratio statistics

description: Composite likelihood inference has gained much popularity thanks to its computational manageability and its theoretical properties. Unfortunately, performing composite likelihood ratio tests is inconvenient because of their awkward asymptotic distribution. There are many proposals for adjusting composite likelihood ratio tests in order to recover an asymptotic chi-square distribution, but they all depend on the sensitivity and variability matrices. The same is true for Wald-type and score-type counterparts. In realistic applications, sensitivity and variability matrices usually need to be estimated, but there are no comparisons of the performance of composite likelihood-based statistics in such an instance. A comparison of the accuracy of inference based on the statistics considering two methods typically employed for estimation of sensitivity and variability matrices, namely an empirical method that exploits independent observations, and Monte Carlo simulation, is performed. The results in two examples involving the pairwise likelihood show that a very large number of independent observations should be available in order to obtain accurate coverages using empirical estimation, while limited simulation from the full model provides accurate results regardless of the availability of independent observations. This suggests the latter as a default choice, whenever simulation from the model is possible.
DOI: 10.6084/m9.figshare.1441242.v1
title: Subject3_func5

description: Subject3_func5
DOI: 10.6084/m9.figshare.1441245.v3
title: Illusion04 - Func4

description: Subject4- Run4- Functional raw images from Fuminari et al experiment published in PlosOne
DOI: 10.6084/m9.figshare.1441244.v3
title: illusion04-Func2

description: Func2 subject 4
DOI: 10.6084/m9.figshare.1441244.v2
title: Subject4-Func2

description: Func2 subject 4
DOI: 10.6084/m9.figshare.1441245.v2
title: Subject4 - Func4

description: Subject4- Run4- Functional raw images from Fuminari et al experiment published in PlosOne
DOI: 10.6084/m9.figshare.1441195.v1
title: Nuf2 is required for chromosome segregation during mouse oocyte meiotic maturation

description: Nuf2 plays an important role in kinetochore-microtubule attachment and thus is involved in regulation of the spindle assembly checkpoint in mitosis. In this study, we examined the localization and function of Nuf2 during mouse oocyte meiotic maturation. Myc<sub>6</sub>-Nuf2 mRNA injection and immunofluorescent staining showed that Nuf2 localized to kinetochores from germinal vesicle breakdown to metaphase I stages, while it disappeared from the kinetochores at the anaphase I stage, but relocated to kinetochores at the MII stage. Overexpression of Nuf2 caused defective spindles, misaligned chromosomes, and activated spindle assembly checkpoint, and thus inhibited chromosome segregation and metaphase-anaphase transition in oocyte meiosis. Conversely, precocious polar body extrusion was observed in the presence of misaligned chromosomes and abnormal spindle formation in Nuf2 knock-down oocytes, causing aneuploidy. Our data suggest that Nuf2 is a critical regulator of meiotic cell cycle progression in mammalian oocytes.
DOI: 10.6084/m9.figshare.1441195.v2
title: Nuf2 is required for chromosome segregation during mouse oocyte meiotic maturation

description: Nuf2 plays an important role in kinetochore-microtubule attachment and thus is involved in regulation of the spindle assembly checkpoint in mitosis. In this study, we examined the localization and function of Nuf2 during mouse oocyte meiotic maturation. Myc<sub>6</sub>-Nuf2 mRNA injection and immunofluorescent staining showed that Nuf2 localized to kinetochores from germinal vesicle breakdown to metaphase I stages, while it disappeared from the kinetochores at the anaphase I stage, but relocated to kinetochores at the MII stage. Overexpression of Nuf2 caused defective spindles, misaligned chromosomes, and activated spindle assembly checkpoint, and thus inhibited chromosome segregation and metaphase-anaphase transition in oocyte meiosis. Conversely, precocious polar body extrusion was observed in the presence of misaligned chromosomes and abnormal spindle formation in Nuf2 knock-down oocytes, causing aneuploidy. Our data suggest that Nuf2 is a critical regulator of meiotic cell cycle progression in mammalian oocytes.
DOI: 10.6084/m9.figshare.1441174
title: ONC-2015-00823 (DNA sequence)

description: DNA sequences data for ONC-2015-00823
DOI: 10.6084/m9.figshare.1441145
title: Gaussian Job Archive for C20H20Cl2O6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1441174.v1
title: ONC-2015-00823 (DNA sequence)

description: DNA sequences data for ONC-2015-00823
DOI: 10.6084/m9.figshare.1441195.v3
title: Nuf2 is required for chromosome segregation during mouse oocyte meiotic maturation

description: Nuf2 plays an important role in kinetochore-microtubule attachment and thus is involved in regulation of the spindle assembly checkpoint in mitosis. In this study, we examined the localization and function of Nuf2 during mouse oocyte meiotic maturation. Myc<sub>6</sub>-Nuf2 mRNA injection and immunofluorescent staining showed that Nuf2 localized to kinetochores from germinal vesicle breakdown to metaphase I stages, while it disappeared from the kinetochores at the anaphase I stage, but relocated to kinetochores at the MII stage. Overexpression of Nuf2 caused defective spindles, misaligned chromosomes, and activated spindle assembly checkpoint, and thus inhibited chromosome segregation and metaphase-anaphase transition in oocyte meiosis. Conversely, precocious polar body extrusion was observed in the presence of misaligned chromosomes and abnormal spindle formation in Nuf2 knock-down oocytes, causing aneuploidy. Our data suggest that Nuf2 is a critical regulator of meiotic cell cycle progression in mammalian oocytes.
DOI: 10.6084/m9.figshare.1441145.v1
title: Gaussian Job Archive for C20H20Cl2O6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1441195.v4
title: Nuf2 is required for chromosome segregation during mouse oocyte meiotic maturation

description: Nuf2 plays an important role in kinetochore-microtubule attachment and thus is involved in regulation of the spindle assembly checkpoint in mitosis. In this study, we examined the localization and function of Nuf2 during mouse oocyte meiotic maturation. Myc<sub>6</sub>-Nuf2 mRNA injection and immunofluorescent staining showed that Nuf2 localized to kinetochores from germinal vesicle breakdown to metaphase I stages, while it disappeared from the kinetochores at the anaphase I stage, but relocated to kinetochores at the MII stage. Overexpression of Nuf2 caused defective spindles, misaligned chromosomes, and activated spindle assembly checkpoint, and thus inhibited chromosome segregation and metaphase-anaphase transition in oocyte meiosis. Conversely, precocious polar body extrusion was observed in the presence of misaligned chromosomes and abnormal spindle formation in Nuf2 knock-down oocytes, causing aneuploidy. Our data suggest that Nuf2 is a critical regulator of meiotic cell cycle progression in mammalian oocytes.
DOI: 10.6084/m9.figshare.1441116
title: Trade-offs in interspecific comparisons in plant ecology and how plants overcome proposed constraints

description: Comparative studies on plant species have not distinguished between two inherently different applications of the idea of a trade-off. In the first case, the theoretical trade-off between two variables leads to a trend line, about which there is a degree of scatter. Any two species in the study are expected, in theory, to show a true trade-off, i.e. feature <i>A</i> must decrease for feature <i>B</i> to increase. This I call the ‘trend line’ type of plot. In the second case, the species are expected to fill a considerable part of the space defined by two axes and the theoretical trade-off leads to a boundary line which limits the extent of the cloud of points. In this case, many interspecific comparisons are not expected to show evidence of a trade-off, but those on the boundary line are expected to do so. This I call the ‘boundary line’ type of plot. In both types of plot, species within a given clade may show a true trade-off, while large numbers of unrelated species do not. First, I undertake to show, by means of examples, the reality of the distinction made above, and to demonstrate that statistically significant and ecologically important negative correlations between features <i>A</i> and <i>B</i> in the ‘trend line’ type of plot can be accompanied by huge variation from the trend line. Second, for plots of the ‘boundary line’ type, I undertake to show that authors have not always tested sufficiently rigorously the constraint lines concerning combinations of supposedly incompatible tolerances, and have not allowed for the absence of certain combinations of unfavourable conditions in the field and consequent lack of selection pressure for the evolution of species with a combination of extreme tolerances. I review two examples of each kind of constrained evolution. First, I take the worldwide leaf economics spectrum and the negative correlation between growth rate in high light and survival rate in deep shade. Second, I review the supposed incompatibilities between shade tolerance and drought tolerance, and between waterlogging tolerance and drought tolerance. I conclude that the term ‘trade-off’ is used too loosely. The common lack of true trade-offs has made possible the species richness of present-day vegetation. Also, small numbers of species have evolved combinations of tolerances that might seem improbable. Not enough research is being aimed at understanding the mechanistic basis of variation about trend lines, and the crossing of supposed boundary lines.
DOI: 10.6084/m9.figshare.1441095
title: Zooplankton DNA barcode library

description: Capture barcode sequences from hundreds of zooplankton specimens simultaneously using NGS platforms
DOI: 10.6084/m9.figshare.1441116.v1
title: Trade-offs in interspecific comparisons in plant ecology and how plants overcome proposed constraints

description: Comparative studies on plant species have not distinguished between two inherently different applications of the idea of a trade-off. In the first case, the theoretical trade-off between two variables leads to a trend line, about which there is a degree of scatter. Any two species in the study are expected, in theory, to show a true trade-off, i.e. feature <i>A</i> must decrease for feature <i>B</i> to increase. This I call the ‘trend line’ type of plot. In the second case, the species are expected to fill a considerable part of the space defined by two axes and the theoretical trade-off leads to a boundary line which limits the extent of the cloud of points. In this case, many interspecific comparisons are not expected to show evidence of a trade-off, but those on the boundary line are expected to do so. This I call the ‘boundary line’ type of plot. In both types of plot, species within a given clade may show a true trade-off, while large numbers of unrelated species do not. First, I undertake to show, by means of examples, the reality of the distinction made above, and to demonstrate that statistically significant and ecologically important negative correlations between features <i>A</i> and <i>B</i> in the ‘trend line’ type of plot can be accompanied by huge variation from the trend line. Second, for plots of the ‘boundary line’ type, I undertake to show that authors have not always tested sufficiently rigorously the constraint lines concerning combinations of supposedly incompatible tolerances, and have not allowed for the absence of certain combinations of unfavourable conditions in the field and consequent lack of selection pressure for the evolution of species with a combination of extreme tolerances. I review two examples of each kind of constrained evolution. First, I take the worldwide leaf economics spectrum and the negative correlation between growth rate in high light and survival rate in deep shade. Second, I review the supposed incompatibilities between shade tolerance and drought tolerance, and between waterlogging tolerance and drought tolerance. I conclude that the term ‘trade-off’ is used too loosely. The common lack of true trade-offs has made possible the species richness of present-day vegetation. Also, small numbers of species have evolved combinations of tolerances that might seem improbable. Not enough research is being aimed at understanding the mechanistic basis of variation about trend lines, and the crossing of supposed boundary lines.
DOI: 10.6084/m9.figshare.1441195.v5
title: Nuf2 is required for chromosome segregation during mouse oocyte meiotic maturation

description: Nuf2 plays an important role in kinetochore-microtubule attachment and thus is involved in regulation of the spindle assembly checkpoint in mitosis. In this study, we examined the localization and function of Nuf2 during mouse oocyte meiotic maturation. Myc<sub>6</sub>-Nuf2 mRNA injection and immunofluorescent staining showed that Nuf2 localized to kinetochores from germinal vesicle breakdown to metaphase I stages, while it disappeared from the kinetochores at the anaphase I stage, but relocated to kinetochores at the MII stage. Overexpression of Nuf2 caused defective spindles, misaligned chromosomes, and activated spindle assembly checkpoint, and thus inhibited chromosome segregation and metaphase-anaphase transition in oocyte meiosis. Conversely, precocious polar body extrusion was observed in the presence of misaligned chromosomes and abnormal spindle formation in Nuf2 knock-down oocytes, causing aneuploidy. Our data suggest that Nuf2 is a critical regulator of meiotic cell cycle progression in mammalian oocytes.