cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10984717
title: Data from: Deep Sea Spy: an online citizen science annotation platform for science and ocean literacy
title: Group dataset

description: Data sets of buccinid Buccinum thermophilum and crab Segonzacia mesatlantica after identifying unique groups (i.e. individuals) — using the updated version (v0.0.3) of the deeptools package — among Deep Sea Spy citizen participants and expert.

Data cleaning : annotated buccinids in background removed

Please, use this version (v4).
DOI: 10.5281/zenodo.14203506
title: Data from: Deep Sea Spy: an online citizen science annotation platform for science and ocean literacy
title: Group dataset
title: R script

description: Data sets of buccinid Buccinum thermophilum and crab Segonzacia mesatlantica after identifying unique groups (i.e. individuals) — using the updated version (v0.0.3) of the deeptools package — among Deep Sea Spy citizen participants and expert.

Data cleaning : annotated buccinids in background removed in CS_groups.csv

R script used to generate and analyse the dataset.

Please, use this version (v5).
DOI: 10.15468/dl.p9bg7p
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "DatasetKey is Canadian Museum of Nature Mammal Collection",
 "TaxonKey is Ursus maritimus Phipps, 1774"
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000161-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7tggcy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Primulina pseudomollifolia W.B.Xu & Yan Liu)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000175-241125135418005/datasets/export for details.
DOI: 10.15468/dl.zxkw7h
title: Occurrence Download

description: A dataset containing 3149 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lumnitzera racemosa Willd."
 ]
}

 The dataset includes 3149 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000174-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/cdc.261
title: Chandra X-ray Observatory Chandra Data Collection for request #261

description: Chandra Data Collection for request #261
description: DOI updated to include the publication's DOI on 2024-10-29-19:00:00
DOI: 10.6084/m9.figshare.27901884
title: <b>饮食管理根据肠道微生物群和代谢物改善多囊卵巢合并肥胖</b>

description: 背景多囊卵巢综合征 （PCOS） 是常见的代谢性疾病。患有 PCOS 的女性经常超重或肥胖。本研究旨在基于肠道菌群探讨生酮饮食在肥胖多囊卵巢综合征 （PCOS） 中的机制。<br>方法为了诱导肥胖的 PCOS，C57BL/6 小鼠皮下注射含有 10 mg 二氢睾酮 （DHT）剂。进行 90% 脂肪和 10% 蛋白质的生酮饮食 3 周。收集新鲜粪便样本进行 16S rRNA。使用 LC-MS 使用血样进行代谢组学分析。使用假不育小鼠验证生酮饮食在 PCOS 合并肥胖中的作用。<br>结果与对照组小鼠相比，接受 DHT 刺激的小鼠体重和睾酮增加，促卵泡激素减少，卵巢组织发生严重变化。生酮饮食显著抑制小鼠的肥胖和 PCOS 样症状。DHT 和/或生酮饮食显着改变了肠道微生物群的组成。α。在β多样性方面，各群体之间存在巨大的距离。<i>中支原体</i>、 <i>埃格菌 、</i> <i>肠 隐</i> 和 <i>贝里氏菌</i> 是 PCOS 和肥胖小鼠的生物标志物。<i>粪杆菌属 （Faecalibaculum</i> 和<i>双歧杆菌属 （Bifidobacterium</i>） 是 DHT+饮食组中的显著属。代谢物群落也显示出巨大的变化。特征代谢物在精氨酸和脯氨酸代谢途径以及赖氨酸降解途径中高度富集。假不育小鼠验证了生酮饮食在 PCOS 合并肥胖中的作用。<br>结论饮食结构能够通过调节微生物群的组成和功能来改善 PCOS 小鼠的肥胖样症状。
DOI: 10.15468/dl.8t2x7n
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Primulina pseudoroseoalba Jian Li, F.Wen & L.J.Yan)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000176-241125135418005/datasets/export for details.
DOI: 10.6084/m9.figshare.27901980
title: UPR TF meanRank

description: UPR TF meanRank
DOI: 10.15468/dl.66vpks
title: Occurrence Download

description: A dataset containing 4386 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhabdomys pumilio (Sparrman, 1784), Rhynchomys soricoides Thomas, 1895, Salpingotus crassicauda Vinogradov, 1924)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4386 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000177-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14217359
title: Pathumthani rice yield data collected in 2018-19
DOI: 10.5281/zenodo.14217358
title: Pathumthani rice yield data collected in 2018-19
DOI: 10.15468/dl.wb6zhf
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Primulina pteropoda (W.T.Wang) Yan Liu)"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000182-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vasebb
title: Occurrence Download

description: A dataset containing 10504 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Myotis velifer (J.A.Allen, 1890)"
 ]
}

 The dataset includes 10504 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000181-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ecpkum
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Primulina pungentisepala (W.T.Wang) Mich.Möller & A.Weber)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000183-241125135418005/datasets/export for details.
DOI: 10.3886/e211841v1
title: Impact of high temperatures on enzyme-linked immunoassay (ELISA) performance for leptin measurements in human milk stored under varied freeze/thaw conditions

description: Our aim is to provide researchers
with information to make informed decisions regarding use of ELISAs that arrive
in suboptimal conditions as well as potential effects on assay measurements. Due
to unexpected shipping conditions from the manufacturer, leptin ELISA kits
arrived at our university laboratory in a warm condition (76.3°F/24.6°C), well
above the 2-8°C temperature conditions recommended by the manufacturer. Since
no data was available on the effects of high temperature exposure during
transportation on the performance of this commercial assay, we
opportunistically assessed assay performance with human milk measurements due
to the growing importance of leptin on lactation and breastfeeding
investigations as well as the ever-present risk of in-transit high temperature
exposure. We found that assay kit exposure to high temperature during shipping
resulted in sample results that were significantly different from temperature-controlled
kits despite similar standard curve performance. We believe the findings will
be of interest to the readers of your journal.
DOI: 10.3886/e211841
title: Impact of high temperatures on enzyme-linked immunoassay (ELISA) performance for leptin measurements in human milk stored under varied freeze/thaw conditions

description: Our aim is to provide researchers
with information to make informed decisions regarding use of ELISAs that arrive
in suboptimal conditions as well as potential effects on assay measurements. Due
to unexpected shipping conditions from the manufacturer, leptin ELISA kits
arrived at our university laboratory in a warm condition (76.3°F/24.6°C), well
above the 2-8°C temperature conditions recommended by the manufacturer. Since
no data was available on the effects of high temperature exposure during
transportation on the performance of this commercial assay, we
opportunistically assessed assay performance with human milk measurements due
to the growing importance of leptin on lactation and breastfeeding
investigations as well as the ever-present risk of in-transit high temperature
exposure. We found that assay kit exposure to high temperature during shipping
resulted in sample results that were significantly different from temperature-controlled
kits despite similar standard curve performance.
DOI: 10.3886/e211841v2
title: Impact of high temperatures on enzyme-linked immunoassay (ELISA) performance for leptin measurements in human milk stored under varied freeze/thaw conditions

description: Our aim is to provide researchers
with information to make informed decisions regarding use of ELISAs that arrive
in suboptimal conditions as well as potential effects on assay measurements. Due
to unexpected shipping conditions from the manufacturer, leptin ELISA kits
arrived at our university laboratory in a warm condition (76.3°F/24.6°C), well
above the 2-8°C temperature conditions recommended by the manufacturer. Since
no data was available on the effects of high temperature exposure during
transportation on the performance of this commercial assay, we
opportunistically assessed assay performance with human milk measurements due
to the growing importance of leptin on lactation and breastfeeding
investigations as well as the ever-present risk of in-transit high temperature
exposure. We found that assay kit exposure to high temperature during shipping
resulted in sample results that were significantly different from temperature-controlled
kits despite similar standard curve performance.
DOI: 10.15468/dl.cmjyh4
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ambystoma leorae (Taylor, 1943)"
 ]
}

 The dataset includes 61 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000186-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aspqm3
title: Occurrence Download

description: A dataset containing 2758 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Lagopus lagopus scotica (Latham, 1787)"
 ]
}

 The dataset includes 2758 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000185-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rv677g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Primulina purpurea F.Wen, Bo Zhao & Y.G.Wei)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000187-241125135418005/datasets/export for details.
DOI: 10.15468/dl.s8zdcr
title: Occurrence Download

description: A dataset containing 3127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 410.0-1000000.0",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus Latreille, 1802",
 "Year 2014-2024"
 ]
}

 The dataset includes 3127 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000188-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ncytz9
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "GadmGid is DEU.10.33_1",
 "TaxonKey is Pipistrellus pipistrellus (Schreber, 1774)"
 ]
}

 The dataset includes 168 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000189-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6hghbx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Primulina purpureokylin F.Wen, Yi Huang & W.C.Chou)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000191-241125135418005/datasets/export for details.
DOI: 10.15468/dl.m8bkmx
title: Occurrence Download

description: A dataset listing the 3476 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((5 45.861,5.36 45.861,5.36 46.67,5 46.67,5 45.861))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta",
 "Year 1924-2024"
 ]
}

 The dataset's 3476 records were derived from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000171-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axw7mz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Primulina qingyuanensis Z.L.Ning & Ming Kang)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000194-241125135418005/datasets/export for details.
DOI: 10.15468/dl.aky3he
title: Occurrence Download

description: A dataset containing 5976 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Perimyotis subflavus (F.Cuvier, 1832)"
 ]
}

 The dataset includes 5976 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000193-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8scw8j
title: Occurrence Download

description: A dataset containing 16004 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((6.69401 43.54973,6.75485 43.54973,6.75485 43.67674,6.69401 43.67674,6.69401 43.54973))"
 ]
}

 The dataset includes 16004 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000195-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26144037
title: Double-filtration plasmapheresis reduces type I interferon bioavailability and inducing activity in systemic lupus erythematosus

description: Type I interferons (IFN-Is) play a significant role in systemic lupus erythematosus (SLE) pathogenesis. Double-filtration plasmapheresis (DFPP) is a treatment option for SLE; however, its effect on IFN-Is remains unclear. Therefore, we investigated the effects of DFPP on IFN-Is. Plasma from patients with SLE (<i>n</i> = 11) who regularly underwent DFPP was analysed using a cell-based reporter system to detect the bioavailability and inducing activity of IFN-I. The concentration of plasma dsDNA was measured, and western blotting analysis was used to assess the phosphorylation of the STING pathway. A higher IFN-I bioavailability and inducing activity were observed in patients compared to healthy controls, and both parameters decreased after DFPP. The reduction in IFN-I-inducing activity was particularly prominent in patients with high disease activity. Notably, this reduction was not observed in STING-knockout reporter cells. Additionally, plasma dsDNA levels decreased after DFPP treatment, suggesting that inhibition of the STING pathway was responsible for the observed decrease in activity. Western blotting analysis revealed suppression of STING pathway phosphorylation after DFPP. DFPP reduced IFN-I bioavailability and the inducing activity of plasma. This reduction is likely attributable to the inhibition of the STING pathway through the elimination of dsDNA.
DOI: 10.6084/m9.figshare.26144037.v1
title: Double-filtration plasmapheresis reduces type I interferon bioavailability and inducing activity in systemic lupus erythematosus

description: Type I interferons (IFN-Is) play a significant role in systemic lupus erythematosus (SLE) pathogenesis. Double-filtration plasmapheresis (DFPP) is a treatment option for SLE; however, its effect on IFN-Is remains unclear. Therefore, we investigated the effects of DFPP on IFN-Is. Plasma from patients with SLE (<i>n</i> = 11) who regularly underwent DFPP was analysed using a cell-based reporter system to detect the bioavailability and inducing activity of IFN-I. The concentration of plasma dsDNA was measured, and western blotting analysis was used to assess the phosphorylation of the STING pathway. A higher IFN-I bioavailability and inducing activity were observed in patients compared to healthy controls, and both parameters decreased after DFPP. The reduction in IFN-I-inducing activity was particularly prominent in patients with high disease activity. Notably, this reduction was not observed in STING-knockout reporter cells. Additionally, plasma dsDNA levels decreased after DFPP treatment, suggesting that inhibition of the STING pathway was responsible for the observed decrease in activity. Western blotting analysis revealed suppression of STING pathway phosphorylation after DFPP. DFPP reduced IFN-I bioavailability and the inducing activity of plasma. This reduction is likely attributable to the inhibition of the STING pathway through the elimination of dsDNA.
DOI: 10.15468/dl.mxfmz8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Primulina qintangensis Z.B.Xin, W.C.Chou & F.Wen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000196-241125135418005/datasets/export for details.
DOI: 10.5281/zenodo.14217355
title: Demonstrations for imitation learning for the paper "Fitting parameters of linear dynamical systems to regularize forcing terms in Dynamical Movement Primitives"

description: Demonstrations for the coathanger experiment in the paper "Fitting parameters of linear dynamical systems to regularize forcing terms in Dynamical Movement Primitives". https://elib.dlr.de/205110/
DOI: 10.5281/zenodo.14217356
title: Demonstrations for imitation learning for the paper "Fitting parameters of linear dynamical systems to regularize forcing terms in Dynamical Movement Primitives"

description: Demonstrations for the coathanger experiment in the paper "Fitting parameters of linear dynamical systems to regularize forcing terms in Dynamical Movement Primitives". https://elib.dlr.de/205110/
DOI: 10.25345/c55x25r02
title: MassIVE MSV000096514 - Multi-omic assessment of mRNA translation dynamics in liver cancer cell lines
title: Translation is the process by which genetic information from mRNA is decoded to produce proteins. Since mRNA levels alone do not predict protein amounts accurately, understanding translational control is essential. Ribosome profiling revealed that translation initiation is the main rate-limiting step, with rates varying up to 100-fold across mRNAs, while elongation rates vary less (~20-fold). Furthermore, only a small fraction of the variation in translation rates is explained by known determinants, indicating that much remains to be understood in the prediction of protein outputs of individual mRNAs. Current machine learning models would benefit from more data on endogenous mRNAs. To address this, here we report steady-state and dynamic multi-omics data from human liver cancer cell lines, specifically i) ribosome profiling of unperturbed cells and following translation initiation block to trace elongation (run-off ribosome profiling), ii) protein synthesis rates estimated by pulsed stable isotope labeled amino acids in cell culture (pSILAC), and iii) mean ribosome load on individual mRNAs determined by mRNA sequencing of polysome fractions (polysome profiling). Predicting protein output from mRNAs is crucial for applications like protein expression engineering or mRNA vaccine designing.
DOI: 10.15468/dl.q86mqb
title: Occurrence Download

description: A dataset containing 2011 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (COL.25_2, COL.8_2, COL.26_2)",
 "OccurrenceStatus is Present",
 "TaxonKey is Rodentia"
 ]
}

 The dataset includes 2011 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000197-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ang3bd
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "OccurrenceStatus is Present",
 "TaxonKey is Penelopides mindorensis Steere, 1890"
 ]
}

 The dataset includes 204 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000199-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w3crqg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Primulina quanbaensis Aver., K.S.Nguyen, T.P.Anh & F.Wen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000200-241125135418005/datasets/export for details.