cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.v1v13/11
title: Genetic and geographic distance matrix for cytb among hibernacula

description: Pairwise PhiST of cytb (above diagonal) and geographic distance (km; below diagonal) between hibernating colonies of Myotis lucifugus used in risk models of disease spread. Column 1 gives sample size (N) and column 2 gives sampling locality (Site).
DOI: 10.5061/dryad.v1v13/8
title: Genetic and geographic distance matrix from range-wide ddRAD-seq

description: Pairwise PhiST of ddRAD-seq (above diagonal) and geographic distance (km; below diagonal) between localities of Myotis lucifugus sampled across their range. The first four columns indicate Region (E=eastern, W=western), Site-type (M=maternity colony, H=hibernaculum, F=foraging site), sample size (N) and sampling locality (Site).
DOI: 10.5061/dryad.v1v13/9
title: Genetic and geographic distance matrix from range-wide cytb

description: Pairwise PhiST of cytb (above diagonal) and geographic distance (km; below diagonal) between localities of Myotis lucifugus sampled across their range. The first four columns indicate Region (E=eastern, W=western), Site-type (M=maternity colony, H=hibernaculum, F=foraging site), sample size (N) and sampling locality (Site).
DOI: 10.5061/dryad.v1v47/3
title: Razgour_etal15_M_escalerai_MrBayes_input

description: Nexus input file of collapsed Myotis escalerai haplotypes for MrBayes phylogenetic analysis.
DOI: 10.5061/dryad.v1v47/4
title: Razgour_etal15_M_escalerai_MrBayes_tree.con

description: MrBayes tree file underlying the phylogeny for Myotis escalerai cytochrome b haplotypes.
DOI: 10.5061/dryad.v1v47/5
title: Razgour_etal15_Structure_all

description: Structure input file for full Myotis escalerai microsatellite dataset.
DOI: 10.5061/dryad.v1v47/6
title: Razgour_etal15_Structure_no_relatives

description: Structure input file for Myotis escalerai microsatellite dataset with relatives removed.
DOI: 10.5061/dryad.v1v47/7
title: Razgour_etal15_MolEcol_Structure_Results

description: Structure results and individual assignments for Myotis escalerai full and no relatives microsatellite datasets.
DOI: 10.5061/dryad.v54p0/1
title: Data on relative telomere length, weight, and body length for GH-transgenic coho salmon and their wild-type maternal half-sibs

description: GH-transgenic coho salmon and their wild-type maternal half-sibs were generated and sampled at Fisheries and Oceans Canada. Telomere attrition rate was measured at University of Gothenburg, Sweden. The variables included in the data sheet (Excel) are explained in detail as comments in the respective column heading.
DOI: 10.5061/dryad.066mr/1
title: Micro-CT scan of an isolated tongue of Ceratophrys ornata

description: This file contains the raw micro-CT data of the tongue in a female ornate horned frog Ceratophrys ornata. The specimen had a snout-vent-length of 70mm. To be able to identify soft tissue structures in the specimen, the animal was treated with Lugol's iodine potassium iodide solution.
DOI: 10.5061/dryad.066mr/2
title: Micro-CT scan of Ceratophrys ornata tongue tissue

description: Micro-CT scan of a piece of tongue tissue of the ornate horned frog Ceratophrys ornata. This piece was cut out from the tongue of the specimen after the animal was treated with Lugol's solution to allow for soft tissue visualization.
DOI: 10.5061/dryad.066mr/3
title: Micro-CT scan of the head of Ceratophrys ornata

description: This is a micro-CT scan of the head of a 70mm female Ceratophrys ornata. The specimen was submerged in Lugol's iodine potassium iodide solution so that cranial muscles and other soft tissue structures are visible.
DOI: 10.5061/dryad.09743/3
title: microsattelite data for the UPGMA analysis

description: genepop file of the microsatellite data of the hybrids of Feldmochinger Lake including experimental hybrid clone of other lakes
DOI: 10.5061/dryad.09743/4
title: raw data overwintering experiment
DOI: 10.5061/dryad.09743/5
title: raw data crowding experiment
DOI: 10.5061/dryad.09743/6
title: rawdata temperature experiment
DOI: 10.5061/dryad.09743/7
title: rawdata carryingcapacity
DOI: 10.5061/dryad.09743/8
title: caculated carryingcapacity
DOI: 10.5061/dryad.2cq7r/1
title: life_history

description: CSV file with raw data of life history trait values
DOI: 10.5061/dryad.2cq7r/2
title: load

description: CSV file with output values of genetic load, inbreeding depression and hybrid vigour. Methods for calculating the values are in the methods section of the paper.
DOI: 10.5061/dryad.37c1m/1
title: Simulated data used in the worked example
DOI: 10.5061/dryad.4t80s/1
title: Data Archiving- Genotypes

description: Genotypes from microsatellite and Single Nucleotide Polymorphism loci from all populations and species
DOI: 10.5061/dryad.5rq76/1
title: Delirium management ICU focus group study-Sociodemographic and ICU data

description: Description of:Time (minutes); Focus group; Participant Code; Age; Sex; Professional experience (years on duty) in intensive care unit; Kind of intensive care unit
DOI: 10.5061/dryad.70q32/1
title: MicrosatsD.carota

description: - ten microsatellite marker for Apiaceae (Cavagnaro et al 2010): GSSR 3; 4; 6; 9; 16; 35; 65; 85; 107; 111;                      - nineteen populations of Daucus carota (ten R = restored population,  nine I = indigenous  population)
DOI: 10.5061/dryad.7qq74/1
title: Normalized gene expression data for all samples

description: This file contains mRNA expression data normalized by library size factor in DEseq for twelve Acropora cervicornis samples. The samples were collected from three colonies (1-3), two locations on the coral branch (branch base and apical tip), at each of two time points (mid-day and mid-night).
DOI: 10.5061/dryad.7qq74/2
title: Colony 1 Day Base Illumina Reads

description: Demultiplexed Illumina read data for Colony 1, daytime base sample of Acropora cervicornis.
DOI: 10.5061/dryad.7qq74/3
title: Colony 1 Day Tip Illumina Reads

description: Demultiplexed Illumina read data for Colony 1, daytime tip sample of Acropora cervicornis.
DOI: 10.5061/dryad.7qq74/4
title: Colony 1 Night Base Illumina Reads

description: Demultiplexed Illumina read data for Colony 1, nighttime base sample of Acropora cervicornis.
DOI: 10.5061/dryad.bp67v/1
title: spec NT

description: Zip archive containing all the spectral files for individuals of the orange form of the frillneck lizard. To be analysed with the script 'script BJLS colour contrasts.R'.
DOI: 10.5061/dryad.bp67v/2
title: spec QLD

description: Zip archive containing spectral files for individuals of the yellow and white forms of the frillneck lizard. To be analysed with the script 'script BJLS colour contrasts.R'.
DOI: 10.5061/dryad.bp67v/3
title: spec WA

description: Zip archive containing spectral files for individuals of the red form of the frillneck lizard. To be analysed with the script 'script BJLS colour contrasts.R'.
DOI: 10.5061/dryad.bp67v/4
title: Colour contrasts WA-QLD from 4 pop data

description: Colour contrasts values for individuals of the red and yellow form, as calculated in the 'script BJLS colour contrasts.R'. These data are used in the script 'script BJLS correlations carot plasma skin colour.R'.
DOI: 10.5061/dryad.bp67v/5
title: Frilly carot plasma skin colour data

description: File containing plasma pigment concentrations, skin pigment concentrations and colour contrasts. Analysed using the script 'script BJLS correlations carot plasma skin colour'.
DOI: 10.5061/dryad.c4018/1
title: Phenotypic selection data

description: Mean pine cone traits and the proportion of seeds consumed by crossbills at 11 sites/years. Each row represents data for one tree, and the rows are ordered by site/year.
DOI: 10.5061/dryad.c61q0/1
title: Black bear data_Moore et al

description: This file contains information from black bear samples collected via harvest from the Northern Lower Peninsula of Michigan, USA. File includes bear ID, sex, estimated age at the time of harvest, geographic coordinates of harvest locations (the centroid of the township, range, and section reported by hunters), and the 12-locus microsatellite genotypes. See associated manuscript for specific details about sample collection, bear aging, sexing, geographic locations, and genotyping.
DOI: 10.5061/dryad.d25s3/1
title: Sand lizard (Lacerta agilis) phenology in a warming world
DOI: 10.5061/dryad.k3882/1
title: Radar data

description: Tracking radar data of nocturnally migrating passerines during autumn migration in Falsterbo, southern Sweden.
DOI: 10.5061/dryad.k3882/2
title: Ringing recovery data

description: Short term ringing recoveries of migrating passerines ringed at Falsterbo Bird Observatory, southern Sweden.
DOI: 10.5061/dryad.k3882/3
title: Radiotelemetry data

description: Data from automatic radiotelemetry system tracking migrating passerines during autumn migration at Falsterbo, southern Sweden.
DOI: 10.5061/dryad.k8073.1
title: Data from: Rapid light-induced shifts in opsin expression: finding new opsins, discerning mechanisms of change, and implications for visual sensitivity
DOI: 10.5061/dryad.k8073.2/1.2
title: datatodryad

description: This Excel file contains the main data from Fuller & Claricoates. We list the population (population), the water treatment (water), and the day on which fish were sampled after being introduced into the lighting treatments (day). Due to low sample sizes, we had to pool these into “early, middle, and late” sampling periods which we refer to as (time). We also list the (sample name) and (sex) of the individual. We then list the mean critical threshold cycle for each individual for the following genes: elongation factor 1-alpha (CT-ef 1a), LWS (CT-LWS), RH2-1 (CT-RH2-1), RH2-2 (CT-RH2-2), SWS1 (CT-SWS1), SWS2A (CT-SWS2A), and SWS2B (CT-SWS2B). Based on these data and the efficiencies listed in our manuscript, we calculated the expression of each opsin gene relative to our housekeeping gene, elongation factor 1 alpha. These are listed as (rel-lws_ef), (rel-rh2-1_ef), (rel-rh2-2_ef), (rel-sws1_ef), (rel-sws2a_ef), and (rel-sws2b_ef). We also calculated the natural log of the relative expression of each opsin. These are listed in this file as (log(relsws1-ef)), (log(relsws2b-ef)), (log(relsws2a-ef)), (log(relrh21-ef)), (log(relrh22-ef)), and (log(rellws-ef)). We also calculated the proportional expression of each opsin gene relative to the total opsin pool.  These are listed in this file as (propLWS), (propRH2-1), (propRH2-2), (propSWS1), (propSWS2a), and (propSWS2b). Finally, we also calculated the proportion expression of each opsin gene relative to all of the opsins, but excluding RH2-2. These are listed in this file as (propSWS1(noRH2-2)), (propSWS2b(noRH2-2)), (propSWS2a(noRH2-2)), (propRH2-1(noRH2-2)), and (propLWS(noRH2-2)). For other inquiries about these data, please contact Becky Fuller – fuller@life.illinois.edu.
DOI: 10.5061/dryad.k8073.2/2.2
title: Lucania goodei EF1 -alpha

description: This is a fasta file that contains the sequence data for elongation factor 1 alpha in Lucania goodei. Genbank would not accept this data because we used cDNA that was pooled from several populations. However, we are analyzing new sequence data from a single population and should soon have an EF-1-alpha sequence submitted to Genbank.
DOI: 10.5061/dryad.k8073.2/3.2
title: Lucania goodei RH2-2

description: This is a fasta file that contains the sequence data for the RH2-2 opsin in Lucania goodei. Genbank would not accept this data because we used cDNA that was pooled from several populations. However, we are analyzing new sequence data from a single population and should soon have an RH2-2 sequence submitted at Genbank.
DOI: 10.5061/dryad.n2cj3/1
title: RM_Data

description: Microsatellite genotypes for the Ram Mountain population.
DOI: 10.5061/dryad.n2cj3/2
title: NBR_Data

description: Microsatellite genotypes for the National Bison Range population.
DOI: 10.5061/dryad.n40h2.2
title: Data from: A suite of genetic markers useful in assessing wildcat (Felis silvestris ssp.) - domestic cat (Felis silvestris catus) admixture
DOI: 10.5061/dryad.n40h2.2/1.2
title: ST1

description: Genotyped individuals
DOI: 10.5061/dryad.n40h2.2/2.2
title: ST2 3 & 4

description: Supplementary Table 2: Mitochondrial sequence alignment showing variable sites. Supplementary Table 3: Synopsis alignment of Felis silvestris phylogenetically informative mitochondrial sites. Supplementary Table 4: Primer sequences for mitochondrial amplification of F. silvestris ssp. informative sites.
DOI: 10.5061/dryad.n40h2.2/3.2
title: ST5

description: Supplementary Table 5: STR genotypes ascertained in range-wide survey.Header rows indicate cat chromosome location of  STR loci with distances given according to conventions used in PHASE (STEPHENS 2004). Alleles are indicated by base-pair length. Missing data is denoted by -9. Individual cats are listed by LGD code in column one. Refer to Supplemental Table 1 for additional information regarding provenance and taxonomic assignment. Data is provided for 77 loci, however only the 36 that amplified most completely across different runs were further characterized and used in published analysis (DRISCOLL et al. 2007). A limited examination of alternative locus combinations (data not shown) that include loci other than the published 36 indicates similar levels of performance. For future studies requiring the greatest genetic resolution these additional data could be considered.
DOI: 10.5061/dryad.n55r8/1
title: RSOS-150031 data files

description: Data files accompanying manuscript 'Incubator-independent cell culture perfusion platform for continuous long-term microelectrode array electrophysiology and time-lapse imaging' by irk Saalfrank, Anil Krishna Konduri, Shahrzad Latifi, Rouhollah Habibey, Asiyeh Golabchi, Aurel Vasile Martiniuc, Alois Knoll, Sven Ingebrandt, and Axel Blau
DOI: 10.5061/dryad.s7193/1
title: OUMC29529

description: Acaenoplax hayae posterior VAMXL files for specimen OUM C.29529
DOI: 10.5061/dryad.s7193/2
title: OUMC29531

description: Acaenoplax hayae posterior VAMXL file for specimen OUM C.29531
DOI: 10.5061/dryad.s7193/3
title: OUMC29691

description: Acaenoplax hayae posterior VAMXL file for specimen OUM C.29691
DOI: 10.5061/dryad.s7193/4
title: OUMC29692

description: Acaenoplax hayae posterior VAMXL file for specimen OUM C.29692
DOI: 10.5061/dryad.sp5jd/1
title: Frogs: clutch size, egg size and body size data

description: This file contains mean body length data for both females and males of 70 frog species. Similarly, it contains mean clutch size data for approximately 66 frog species, mean egg size data for approximately 49 frog species and presence or absence of parental care data for approximately  62 species (references are given in the file).
DOI: 10.5061/dryad.t16c5/1
title: dryad clinal data

description: File containing all the raw data for both constant and fluctuating environments for all traits assessed following 1 year of laboratory evolution.
DOI: 10.5061/dryad.tv380/5
title: Visits on introduced potted plants recorded by camera recorders

description: Collected by Julie Lebeau in the field.
DOI: 10.5061/dryad.tv380/6
title: Interactions during butterfly trackings

description: Collected in the field bu Julie Lebeau.
DOI: 10.5061/dryad.tv380/7
title: Number of activity changes during butterfly trackings

description: Collected by Julie Lebeau in the field
DOI: 10.5061/dryad.tv380/8
title: Butterfly transect counts

description: Collected by Julie Lebeau in the field
DOI: 10.5061/dryad.vt69s/1
title: Correlation values from vocal interaction matrices

description: Calling interactions in group-housed zebra finches: correlation values from vocal interaction matrices for call-type and bird combinations, calculated from PSTHs. Matrices were transposed to columns (focal bird) and rows (non-focal bird), and supplemented with information on: Trial; day; identity, sex and call type of focal and non-focal bird; whether interacting birds were pair members (Pairmembers(y/no)); whether vocal interactions were positive, non-significant or negative (Interaction(pos/0/neg); how call types were combined (combination.type); whether focal bird was in a pair that produced a clutch of eggs (focal.eggslaid); reproductive stage of the focal bird (nest.stage = summary, breeding.stage = more detailed).
DOI: 10.5061/dryad.vt69s/2
title: Figure 2 – figure supplement 1: Differences in steroid hormone concentrations at baseline levels and the three nest stages

description: For each trial and bird, we provide steroid hormone values (DHT = dihydrotestosterone, E2 = estradiol, P4 = progesterone, Testo = testosterone) in relation to sex, Timepoint of plasma collection (base = baseline, i.e. before females and males were joined in aviary; join1 = one day after males and females were joined, nestmat1 = one week later, one day after nest material was provided) and reproductive stages (baseline.nest.stage).
DOI: 10.5061/dryad.vt69s/3
title: Figure 4 and Figure 4 – Figure supplement 1: Female and male call-type usage at different nest stages and breeding stages

description: For each trial and bird, we provide the number of calls (nrCalls_extrapolated, extrapolated to 4 hours of recordings) and the proportion of calls (divided by the sum of all five call types) produced in different call types, with information on day, sex and reproductive stage (nest.stage = summary, breeding.stage = more detailed).
DOI: 10.5061/dryad.vt69s/7
title: Figure 2: Group reproductive stages change over time

description: This table contains the percentage of birds assigned to different reproductive stages (nest.stage = summary, breeding.stage = more detailed) for each day of the experiment, along with the absolute numbers (sum) and the number of birds measured (number_birds), for the calculation. Note that only the first 20 days are presented in the graph.
DOI: 10.5061/dryad.11k3m/1
title: GnRH antagonist versus standard AST

description: RevMan data file of data analysis/meta-analysis. For details on patient characteristics, characteristics of included studies, risk of bias assessment and evaluation of quality of evidence according to GRADE see published manuscript (BMJ Open)
DOI: 10.5061/dryad.26s85/1
title: Pacioni_etal_data

description: Data associated with Pacioni, C., Hunt, H., Allentoft, M.E., Vaughan, T.G., Wayne, A.F., Baynes, A., Haouchar, D., Dortch, J., Bunce, M., in press. Genetic diversity loss in a biodiversity hotspot: ancient DNA quantifies genetic decline and former connectivity in a critically endangered marsupial. Molecular Ecology. Please refer to ReadMe.txt (within the zipped folder) for additional information.
DOI: 10.5061/dryad.32h8t/1
title: microsatellite alleles for hybrid C. acutus and C. moreletii

description: Microsatellite data set for 7 loci used for STRUCTURE and NewHybrids analyses.
DOI: 10.5061/dryad.32h8t/2
title: bioclim_and_salinity

description: Bioclim data and salinity data for localities in southern Belize where parental C. acutus, C. moreletii and hybrids samples were collected.
DOI: 10.5061/dryad.32h8t/3
title: croc_morphology

description: Morphometric and scalation data for genetically identified C. acutus, C. moreletii and hybrid crocodiles in southern Belize.
DOI: 10.5061/dryad.32h8t/4
title: Carib12sInterleaved
DOI: 10.5061/dryad.32h8t/5
title: Carib16sInterleaved
DOI: 10.5061/dryad.32h8t/6
title: CaribDloopInterleaved
DOI: 10.5061/dryad.3m2c3/1
title: predator kairomones and prey cues

description: The file contains all the data used in the manuscript. The first column are the treatment names. The second, third and fourth columns are different descriptors of bromeliad morphology: these three measures (data centered and standardized) were used in a PCA, and the first axis of the ordination was used as a measure of bromeliad size (site scores were multiplied by -1, so that larger scores represented larger bromeliads). The other variables in the file are the response variables used in our study. The units of measurement are shown together with the variable names.
DOI: 10.5061/dryad.42s50/1
title: allgenes_allH_outg

description: Sequence Alignments for Horismenus spp.
DOI: 10.5061/dryad.48643/2
title: S_7_Table
DOI: 10.5061/dryad.4t80s/2
title: Data Archiving- Metadata

description: Metadata associated to the genotypes data file
DOI: 10.5061/dryad.62f0r/1
title: MrBayes_configAndResults

description: Nexus datafile (alignment), MrBayes commands, and resulting parameter and tree log files.
DOI: 10.5061/dryad.62f0r/2
title: alignments_andTrees_v5

description: Nexus files (alignments) for each locus, with their corresponding maximum likelihood tree.
DOI: 10.5061/dryad.62f0r/3
title: add_genbankNums_toVouchertable

description: Python script to extract the genBank numbers from the list supplied by NCBI (in response to a sequin submission) and format them into an accession-by-locus table.
DOI: 10.5061/dryad.62f0r/4
title: add_node_numbers_to_tree

description: Python script to print a version of an input phylogeny with the nodes annotated with their node number. (So that, e.g., the nodes can be matched to their divergence time estimates, etc.)
DOI: 10.5061/dryad.62f0r/5
title: append_metadata_tofasta_forSequin

description: A python script that goes through a single-locus alignment and matches each taxon in that alignment with the corresponding metadata, which it adds in a Sequin block to the alignment file. For automating the production of Sequin submission to GenBank in cases where there are many loci, each with different combinations of taxa.
DOI: 10.5061/dryad.62f0r/6
title: nexusToNewick

description: Python script to convert a bunch of tree files from nexus to newick format.
DOI: 10.5061/dryad.62f0r/7
title: summarizing_support

description: R script to summarize support values across analyses. Computes average node support, does t- and z-tests to examine whether average support differs across analyses/whether support for particular nodes differs.
DOI: 10.5061/dryad.7qq74/10
title: Colony 3 Day Base Illumina Reads

description: Demultiplexed Illumina read data for Colony 3, daytime base sample of Acropora cervicornis.
DOI: 10.5061/dryad.7qq74/11
title: Colony 3 Day Tip Illumina Reads

description: Demultiplexed Illumina read data for Colony 3, daytime tip sample of Acropora cervicornis.
DOI: 10.5061/dryad.7qq74/5
title: Colony 1 Night Tip Illumina Reads

description: Demultiplexed Illumina read data for Colony 1, nighttime tip sample of Acropora cervicornis.
DOI: 10.5061/dryad.7qq74/6
title: Colony 2 Day Base Illumina Reads

description: Demultiplexed Illumina read data for Colony 2, daytime base sample of Acropora cervicornis.
DOI: 10.5061/dryad.7qq74/7
title: Colony 2 Day Tip Illumina Reads

description: Demultiplexed Illumina read data for Colony 2, daytime tip sample of Acropora cervicornis.
DOI: 10.5061/dryad.7qq74/8
title: Colony 2 Night Base Illumina Reads

description: Demultiplexed Illumina read data for Colony 2, nighttime base sample of Acropora cervicornis.
DOI: 10.5061/dryad.7qq74/9
title: Colony 2 Night Tip Illumina Reads

description: Demultiplexed Illumina read data for Colony 2, nighttime tip sample of Acropora cervicornis.
DOI: 10.5061/dryad.99qj3.1
title: Data from: Using striated tooth marks on bone to predict body size in theropod dinosaurs: a model based on feeding observations of Varanus komodoensis, the Komodo monitor
DOI: 10.5061/dryad.99qj3.2
title: Data from: Using striated tooth marks on bone to predict body size in theropod dinosaurs: a model based on feeding observations of Varanus komodoensis, the Komodo monitor
DOI: 10.5061/dryad.99qj3.2/1.2
title: Table S1

description: Crown morphometrics for Varanus komodoensis dry skull specimens
DOI: 10.5061/dryad.99qj3.2/2.2
title: Table S2

description: Skull and body measurements for ziphodont specimens of Varanus komodoensis and theropods.
DOI: 10.5061/dryad.99qj3.2/3.2
title: Table S3

description: Dental crown morphometrics for theropod fossil specimens
DOI: 10.5061/dryad.99qj3.2/4.2
title: Table S4

description: A listing of all Varanus komodoensis striated tooth marks collected.
DOI: 10.5061/dryad.99qj3.2/5.2
title: Table S5

description: Analysis of covariance (ANCOVA) output for regressions