cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3965861
title: data for "A disordered encounter complex is central to the yeast Abp1p SH3 domain binding pathway"

description: Protein-protein interactions are involved in a wide range of cellular processes. These interactions often involve intrinsically disordered proteins (IDPs) and protein binding domains. However, the details of IDP binding pathways are hard to characterize using experimental approaches, which can rarely capture intermediate states present at low populations. SH3 domains are common protein interaction domains that typically bind proline-rich disordered segments and are involved in cell signaling, regulation, and assembly. We hypothesized, given the flexibility of SH3 binding peptides, that their binding pathways include multiple steps important for function. Molecular dynamics simulations were used to characterize the steps of binding between the yeast Abp1p SH3 domain (AbpSH3) and a proline-rich IDP, ArkA. Before binding, the N-terminal segment 1 of ArkA is pre-structured and adopts a polyproline II helix, while segment 2 of ArkA (C-terminal) adopts a 310 helix, but is far less structured than segment 1. As segment 2 interacts with AbpSH3, it becomes more structured, but retains flexibility even in the fully engaged state. Binding simulations reveal that ArkA enters a flexible encounter complex before forming the fully engaged bound complex. In the encounter complex, transient nonspecific hydrophobic and long- range electrostatic contacts form between ArkA and the binding surface of SH3. The encounter complex ensemble includes conformations with segment 1 in both the forward and reverse orientation, suggesting that segment 2 may play a role in stabilizing the correct binding orientation. While the encounter complex forms quickly, the slow step of binding is the transition from the disordered encounter ensemble to the fully engaged state. In this transition, ArkA makes specific contacts with AbpSH3 and buries more hydrophobic surface. Simulating the binding between ApbSH3 and ArkA provides insight into the role of encounter complex intermediates and nonnative hydrophobic interactions for other SH3 domains and IDPs in general.
DOI: 10.5281/zenodo.3965860
title: data for "A disordered encounter complex is central to the yeast Abp1p SH3 domain binding pathway"

description: Protein-protein interactions are involved in a wide range of cellular processes. These interactions often involve intrinsically disordered proteins (IDPs) and protein binding domains. However, the details of IDP binding pathways are hard to characterize using experimental approaches, which can rarely capture intermediate states present at low populations. SH3 domains are common protein interaction domains that typically bind proline-rich disordered segments and are involved in cell signaling, regulation, and assembly. We hypothesized, given the flexibility of SH3 binding peptides, that their binding pathways include multiple steps important for function. Molecular dynamics simulations were used to characterize the steps of binding between the yeast Abp1p SH3 domain (AbpSH3) and a proline-rich IDP, ArkA. Before binding, the N-terminal segment 1 of ArkA is pre-structured and adopts a polyproline II helix, while segment 2 of ArkA (C-terminal) adopts a 310 helix, but is far less structured than segment 1. As segment 2 interacts with AbpSH3, it becomes more structured, but retains flexibility even in the fully engaged state. Binding simulations reveal that ArkA enters a flexible encounter complex before forming the fully engaged bound complex. In the encounter complex, transient nonspecific hydrophobic and long- range electrostatic contacts form between ArkA and the binding surface of SH3. The encounter complex ensemble includes conformations with segment 1 in both the forward and reverse orientation, suggesting that segment 2 may play a role in stabilizing the correct binding orientation. While the encounter complex forms quickly, the slow step of binding is the transition from the disordered encounter ensemble to the fully engaged state. In this transition, ArkA makes specific contacts with AbpSH3 and buries more hydrophobic surface. Simulating the binding between ApbSH3 and ArkA provides insight into the role of encounter complex intermediates and nonnative hydrophobic interactions for other SH3 domains and IDPs in general.
DOI: 10.5255/ukda-sn-7311-1
title: Crime Survey for England and Wales, 2011-2013: Secure Access, Low-Level Geographic Data
DOI: 10.5255/ukda-sn-6707-3
title: Occupational Pension Scheme Survey, 2006-2012: Secure Access
DOI: 10.5255/ukda-sn-7022-2
title: Prices Survey Microdata, 1996-2012: Secure Access
DOI: 10.6073/pasta/779f00bfe9c1d895c3606995ea7d04ac
title: Measurements of Soil Water Chemistry at the Coweeta Terrestrial Gradient Sites
DOI: 10.6073/pasta/fd8ad17d498c1fc6dad7cfca64a748ff
title: Net nitrogen mineralization from shrub gradient and snow manipulations, near Toolik field station, collect in the summer of 2006 and winter of 2006-2007
DOI: 10.6073/pasta/03203454f60ee3f6d81a07a0022f645e
title: Mass, C, N, and lignin from litter decomposed across a shrub gradient and with snow manipulations near Toolik Field Station between 2003 and 2009.
DOI: 10.6073/pasta/cc0e1bc791d2b3bcd6f3171caac1c580
title: Master Plant Species Information Database for the Sevilleta National Wildlife Refuge, New Mexico
DOI: 10.7267/n9bg2kwh
title: Characterization of Neurospora crassa “Fatty Acid Regulator” transcription factors, FAR-1 and FAR-2, by ChIP- and RNA-sequencing
DOI: 10.6073/pasta/c6e565b990591ac082731d4b86fede55
title: Terrestrial Gradient Throughfall Collections
DOI: 10.6073/pasta/88d383228dac46838f8b7eec595e6e0d
title: The Burden of Reproduction in Lizards: Changes in Respiratory Physiology Associated with Reduced Lung Volume at the Sevilleta National Wildlife Refuge
DOI: 10.6073/pasta/1f1b21e2134c620f3921c933517113a5
title: Rio Grande River Sonde Data from Bernalillo County, New Mexico (2006-2007)
DOI: 10.6073/pasta/efd540f61c01b55140e59bb3e5dc9ee9
title: The Burden of Reproduction in Lizards: Changes in Respiratory Physiology Associated with Reduced Lung Volume at the Sevilleta National Wildlife Refuge (2007-2008)
DOI: 10.6073/pasta/ee7f845be1c631b17540cf9ae94891a5
title: Rio Grande Water Chemistry Data from Bernalillo County, New Mexico (2006-2007)
DOI: 10.14272/dydavemwgwfnje-wapolksxsa-n/dept/135
title: DEPT/135 ((3R,4R,5S,6R)-2,4,5-tris(phenylmethoxy)-6-(phenylmethoxymethyl)oxan-3-amine)

description: This is a dataset.
DOI: 10.14272/lptitagpbxddgr-iwqydbtjsa-n/dept/90
title: DEPT/90 (new CC(=O)OC[C@H]1OC(OC(=O)C)[C@@H]([C@H]([C@@H]1OC(=O)C)OC(=O)C)OC(=O)C)

description: This is a dataset.
DOI: 10.14272/lptitagpbxddgr-iwqydbtjsa-n/nmr/13c/cdcl3/100
title: NMR/13C/CDCl3/100 (new CC(=O)OC[C@H]1OC(OC(=O)C)[C@@H]([C@H]([C@@H]1OC(=O)C)OC(=O)C)OC(=O)C)

description: This is a dataset.
DOI: 10.14272/lptitagpbxddgr-iwqydbtjsa-n/nmr/1h/cdcl3/400
title: NMR/1H/CDCl3/400 (new CC(=O)OC[C@H]1OC(OC(=O)C)[C@@H]([C@H]([C@@H]1OC(=O)C)OC(=O)C)OC(=O)C)

description: This is a dataset.
DOI: 10.14272/qkghbqjlehamkj-gnmomjppsa-n/dept/135
title: DEPT/135 ([(2R,3S,4R,5R)-3,4,6-triacetyloxy-5-azidooxan-2-yl]methyl acetate)

description: This is a dataset.
DOI: 10.14272/qkghbqjlehamkj-gnmomjppsa-n/dept/90
title: DEPT/90 ([(2R,3S,4R,5R)-3,4,6-triacetyloxy-5-azidooxan-2-yl]methyl acetate)

description: This is a dataset.
DOI: 10.14272/qkghbqjlehamkj-gnmomjppsa-n/ir
title: IR ([(2R,3S,4R,5R)-3,4,6-triacetyloxy-5-azidooxan-2-yl]methyl acetate)

description: This is a dataset.
DOI: 10.14272/lptitagpbxddgr-iwqydbtjsa-n/dept/135
title: DEPT/135 (new CC(=O)OC[C@H]1OC(OC(=O)C)[C@@H]([C@H]([C@@H]1OC(=O)C)OC(=O)C)OC(=O)C)

description: This is a dataset.
DOI: 10.14272/ypnfvzqpwzmhif-ljizciszsa-n/dept/135
title: DEPT/135 ([(2R,3R,4S,5R,6S)-3,4,5-triacetyloxy-6-ethylsulfanyloxan-2-yl]methyl acetate)

description: This is a dataset.
DOI: 10.14272/ypnfvzqpwzmhif-ljizciszsa-n/dept/90
title: DEPT/90 ([(2R,3R,4S,5R,6S)-3,4,5-triacetyloxy-6-ethylsulfanyloxan-2-yl]methyl acetate)

description: This is a dataset.
DOI: 10.14272/ypnfvzqpwzmhif-ljizciszsa-n/ir
title: IR ([(2R,3R,4S,5R,6S)-3,4,5-triacetyloxy-6-ethylsulfanyloxan-2-yl]methyl acetate)

description: This is a dataset.
DOI: 10.6073/pasta/1f91bb2c3136667e062c45314e9facdd
title: Lake Shoreline in the Contiguous United States
DOI: 10.6073/pasta/919d099fb78d266a22caf3fb7e269751
title: Mass per tiller, nitrogen concentration, stable isotope ratios for C and N from the 1980-82 Eriophorum vaginatum reciprocal transplant experiment collected in July, 2011.
DOI: 10.6073/pasta/4427e5ddee01d0cd21802bffee7e53c1
title: NASA Sun Photometry Data at the Sevilleta National Wildlife Refuge, New Mexico  (1994- )
DOI: 10.6073/pasta/3a23918717f6d70ddd51d15716a40669
title: East-West C3-C4 Grassland Biomass Fertilizer Plots in a Chihuahuan Desert Grassland at the Sevilleta National Wildlife Refuge, New Mexico (1989-1992)
DOI: 10.6073/pasta/c9fce0fde202bb551502b1ddc89cae89
title: Ukulinga Farms, South Africa:  Species List
DOI: 10.6073/pasta/356737ca298b1a1dcca0f83f4806549b
title: Monsoon Rainfall Manipulation Experiment (MRME) Meteorology Data from a Chihuahuan Desert Grassland at the Sevilleta National Wildlife Refuge, New Mexico (7/2007 - 8/2009)
DOI: 10.6073/pasta/e4c43aaa1401d9212ecf7dfedd301c3e
title: Local Adaptation to Freezing in High and Low Latitude Populations of L. tridentata (Sevilleta National Wildlife Refuge, New Mexico; Higuerillas, Mexico) and L. divaricata (Bajada del Diablo and Chamical, Argentina) (2006-2009))
DOI: 10.6073/pasta/b9def8042833abdda5fcdda48dd2acca
title: Long-term Intersite Decomposition Team (LIDET) Plant Litter Data at the Sevilleta National Wildlife Refuge, New Mexico (1990-2001)
DOI: 10.6073/pasta/0075b5e92e0c4d9248e6336592b9dd55
title: Konza Prairie, Kansas Plant Species List
DOI: 10.6073/pasta/2b2bd7cabed20b2cbc681e99686bc110
title: Pinon-Juniper (Core Site) Quadrat Data for the Net Primary Production Study at the Sevilleta National Wildlife Refuge, New Mexico (2003- )
DOI: 10.6073/pasta/8280c77d9d9217734fc02c90ba4b90e9
title: Net Primary Production Data: Konza-Kruger Fire-Grazing Project 2010-2011
DOI: 10.6073/pasta/1ddc32557203aa59ca3febc35973ec06
title: Light-saturated photosynthetic rate, dark respiration, stomatal conductance and ratio of internal to external CO2 concentration from the 1980-82 Eriophorum vaginatum reciprocal transplant experimental plots from Eagle Creek to Prudhoe Bay, Alaska; measured in July 2010.
DOI: 10.6073/pasta/afabb15c70329622d3cc74d6e9f0541c
title: Biome Transition Along Elevational Gradients  in New Mexico (SEON) Study: Flux Tower Net Primary Productivity (NPP) Quadrat Study at the Sevilleta National Wildlife Refuge, New Mexico (2011- )
DOI: 10.6073/pasta/bf79171dd2df506972986915cb2672d5
title: Biome Transition Along Elevational Gradients in New Mexico (SEON) AmeriFlux Data (2007- )
DOI: 10.6073/pasta/80697db919456109a37f2473e661b4b2
title: Ecosystem-scale rainfall manipulation in a Pinon-Juniper woodland: Tree Sapwood and Leaf Area Data
DOI: 10.6073/pasta/da676946833c01a0a1da667f59b3d3fd
title: Core Site Grid Quadrat Data for the Net Primary Production Study at the Sevilleta National Wildlife Refuge, New Mexico (2013- )
DOI: 10.6073/pasta/be997b7063468711ee16fb5d8d290cb2
title: Kruger Species Composition: Konza-Kruger Fire-Grazing Project (2006-2010)
DOI: 10.6073/pasta/f5bf3e980671178698d51f71f8d484cd
title: Konza Species Composition: Konza-Kruger Fire-Grazing Project (2006-2010)
DOI: 10.6073/pasta/b539b5e5a77ff5f5f46d06b3e1467f43
title: Gunnison's Prairie Dog Relocation Project: Population Dynamics within Grasslands at the Sevilleta National Widlife Refuge, New Mexico (2005-2012)
DOI: 10.6073/pasta/3c9baf02835754c8ba8ae16305de21cd
title: Net Primary Production Data: Konza-Kruger Fire-Grazing Project 2006-2009
DOI: 10.6073/pasta/9e93b3df307aee90fcc3e374f2e41e93
title: Warming-El Nino-Nitrogen Deposition Experiment (WENNDEx): Meteorology Data (4/30/2007 - 8/5/2009)
DOI: 10.6073/pasta/ee0612be7ddadd5d5945118c70550d2e
title: Mycorrhizal belowground fungi species list of the Andrews Experimental Forest, 1992 to 1994
DOI: 10.6073/pasta/b75017cddc991a02d3ed3302578b5b45
title: Spatial and temporal distribution and abundance of butterflies in the Andrews Experimental Forest, 1994-1996
DOI: 10.6073/pasta/babf56fed5882756432f28982312a551
title: Aquatic insect sampling in Lookout Creek at the H.J. Andrews Experimental Forest, 2001
DOI: 10.3886/icpsr01027.v1
title: Learning Curve and Optimal Production Under Uncertainty-- Computer Program
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
description: This is a program and files needed to run the program. The program can be run on any IBM compatible personal computer that has a math coprocessor installed.
DOI: 10.3886/icpsr01028.v1
title: The Quit-Layoff Distinction and Related Topics in Labor Turnover
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
DOI: 10.3886/icpsr01029.v1
title: Mean Reversion in Stock Prices
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
DOI: 10.3886/icpsr01030.v1
title: Are Consumers Forward Looking?
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
description: This is basically output from data analysis.
DOI: 10.3886/icpsr01031.v1
title: Semiparametric Arch Models
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
DOI: 10.3886/icpsr01032.v1
title: Excess Co-Movement of Commodity Prices
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
description: This consists of a Lotus worksheet which contains all of the commodity data used in this paper.
DOI: 10.3886/icpsr01033.v1
title: Samples of Federal Manuscript Data for Five Massachusetts Towns: Chicopee, Easthampton, Montague, Pelham, and Springfield for 1880, 1900, and 1910
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
description: This contains data and documentation for samples of federal manuscript data for five Massachusetts towns (Chicopee, Easthampton, Montague, Pelham, and Springfield) for 1880, 1900, and 1910.
DOI: 10.3886/icpsr01034.v1
title: Rank-Order Voting Data, 1986-1988
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
description: Data collected by Nicolaus Tideman and I.D. Hill. Tideman alone is the author of the paper.
DOI: 10.3886/icpsr01035.v1
title: Money Demand in the United States: A Quantitative Review
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
DOI: 10.3886/icpsr01036.v1
title: Causes of Preference Reversal, Study 1: Sets I, II, and III
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
description: Has hard copy documentation.
DOI: 10.3886/icpsr01037.v1
title: Asset Market Experiments, 1986-1990
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
DOI: 10.3886/icpsr01040.v1
title: Fare Determination in Airline Hub-and-Spoke Networks
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
DOI: 10.3886/icpsr01041.v1
title: Seasonal Integration and Cointegration, (1955-1984)
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
DOI: 10.3886/icpsr01042.v1
title: Finite Lifetimes and the Effects of Budget Deficits on National Saving
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
DOI: 10.3886/icpsr01043.v1
title: Implied Arch Model from Options Prices
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
DOI: 10.3886/icpsr01044.v1
title: Opening and Closing Quotes for the Tokyo and New York Interbank Markets and Stock Exchanges
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
DOI: 10.3886/icpsr01045.v1
title: Project on Lifetime Incomes and Consumption
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
DOI: 10.3886/icpsr01048.v1
title: A Statistical Inference Engine for Small, Dependent Samples [Version 2.310]
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
DOI: 10.3886/icpsr01049.v1
title: The Adjustment Mechanism
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
DOI: 10.3886/icpsr01053.v1
title: On Political Methodology
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
description: No hard copy documentation.
DOI: 10.3886/icpsr01054.v1
title: Unified Method of Evaluating Electoral Systems and Redistricting Plans: United States House of Representatives and Ohio State Legislature
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
description: No hard copy documentation.
DOI: 10.3886/icpsr01055.v1
title: Data and Programs from Publication(s) Reproducing Studies Done by James D. Hamilton et al.
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
description: All documentation machine-readable.
DOI: 10.3886/icpsr01056.v1
title: Filtering with ARCH: A Monte Carlo Experiment
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
description: No hard copy documentation.
DOI: 10.3886/icpsr01057.v1
title: Cointegration and Exchange Rate Dynamics
title: Version 1

description: These data and/or computer programs are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the INVESTIGATOR(S) if further information is desired.
description: Datasets: 
 
 DS1: Dataset
description: No hard copy documentation.