cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.18150/4878ud
title: Identification of potential SARS‐CoV‐2 genomic regions representing hallmarks for adaptation to different hosts

description: The k-mer-based pipeline, namely the Pathogen Origin Recognition Tool using Enriched K-mers (PORT-EK) identifies genomic regions enriched in the respective hosts after the comparison of multi-genomes of isolates between different host species. The enriched k-mer counts, which may serve as a potential marker, enable the classification and prediction of the likelihood of the host species. Altogether, PORT-EK showcased its feasibility for identifying viral genomic regions over-represented in respective hosts, illuminating the different intrinsic tropisms of coronavirus host adaptation.
DOI: 10.5281/zenodo.15202188
title: EBIKK-β Model with Twisted Compactification: A Path to SU(N) Yang-Mills Theory with Mass Gap

description: We present a modified EBIKK-β model combining Born-Infeld nonlinear electrodynamics, entropic gravity, and twisted Kaluza-Klein compactification. Key results include:• Extension from U(1) to SU(N) symmetry via twisted boundary conditions• Emergence of a mass gap ∼ ΛQCD without Higgs mechanism• Glueball spectrum (0++, 2++) matching lattice SU(2) data• Holographic duality with ⟨F2⟩ ̸= 0 condensateThe model offers a novel approach to confinement and quantum gravity.
DOI: 10.5281/zenodo.15202189
title: EBIKK-β Model with Twisted Compactification: A Path to SU(N) Yang-Mills Theory with Mass Gap

description: We present a modified EBIKK-β model combining Born-Infeld nonlinear electrodynamics, entropic gravity, and twisted Kaluza-Klein compactification. Key results include:• Extension from U(1) to SU(N) symmetry via twisted boundary conditions• Emergence of a mass gap ∼ ΛQCD without Higgs mechanism• Glueball spectrum (0++, 2++) matching lattice SU(2) data• Holographic duality with ⟨F2⟩ ̸= 0 condensateThe model offers a novel approach to confinement and quantum gravity.
DOI: 10.15468/jpz7g7
title: A New Asterinid Sea Star, Disasterina akajimaensis (Echinodermata: Asteroidea) from the Ryukyu Islands, Japan, with Notes on the Genus Disasterina

description: This dataset contains the digitized treatments in Plazi based on the original journal article Saba, Masaki, Iwao, Kenji, Fujita, Toshihiko (2012): A New Asterinid Sea Star, Disasterina akajimaensis (Echinodermata: Asteroidea) from the Ryukyu Islands, Japan, with Notes on the Genus Disasterina. Species Diversity 17 (1): 21-28, DOI: 10.12782/sd.17.1.021, URL: https://www.jstage.jst.go.jp/article/specdiv/17/1/17_KJ00008044952/_article
DOI: 10.15468/wxn8rt
title: Integrative taxonomy of coastal Cafius bistriatus (Erichson) species complex (Coleoptera, Staphylinidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yoo, In-Seong, Frank, J. H., Jung, Jong-Kuen, Ahn, Kee-Jeong (2022): Integrative taxonomy of coastal Cafius bistriatus (Erichson) species complex (Coleoptera, Staphylinidae). ZooKeys 1100: 57-70, DOI: http://dx.doi.org/10.3897/zookeys.1100.79435, URL: http://dx.doi.org/10.3897/zookeys.1100.79435
DOI: 10.15468/mza4n7
title: Out of the Pacific: A second fossil porpoise from the Pliocene of the North Sea Basin

description: This dataset contains the digitized treatments in Plazi based on the original journal article Colpaert, Wouter, Bosselaers, Mark, Lambert, Olivier (2015): Out of the Pacific: A second fossil porpoise from the Pliocene of the North Sea Basin. Acta Palaeontologica Polonica 60 (1): 1-10, DOI: 10.4202/app.00115.2014, URL: http://dx.doi.org/10.4202/app.00115.2014
DOI: 10.15468/dl.v4kbu8
title: Occurrence Download

description: A dataset containing 391 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Schizoeaca coryi (Berlepsch, 1888)"
 ]
}

 The dataset includes 391 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032292-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h8bsmk
title: Occurrence Download

description: A dataset containing 155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Callinectes exasperatus (Gerstaecker, 1856)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 155 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044565-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.96ulpg
title: Occurrence Download

description: A dataset containing 2047 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Casuarius casuarius (Linnaeus, 1758)"
 ]
}

 The dataset includes 2047 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010179-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pn385h
title: Occurrence Download

description: A dataset containing 2048 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Urosticte ruficrissa Lawrence, 1864"
 ]
}

 The dataset includes 2048 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032262-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bepgry
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Acanthodactylus tristrami (Günther, 1864)"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075293-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k3in75
title: Occurrence Download

description: A dataset containing 16284 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sideroxylon L."
 ]
}

 The dataset includes 16284 records from 290 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010179-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7d4tc
title: Occurrence Download

description: A dataset containing 8506 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Rissa brevirostris (Bruch, 1855)"
 ]
}

 The dataset includes 8506 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032252-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ckjwbv
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erica andreaei Compton"
 ]
}

 The dataset includes 24 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042133-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ehaydb
title: Occurrence Download

description: A dataset containing 7267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Helicoverpa armigera (Hübner, 1808)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7267 records from 142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012782-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zretsp
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Eriocnemis nigrivestis (Bourcier & Mulsant, 1852)"
 ]
}

 The dataset includes 189 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032245-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3z35wk
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erica anemodes E.G.H.Oliv."
 ]
}

 The dataset includes 15 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042147-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uaqlfc
title: Occurrence Download

description: A dataset containing 397 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Romerolagus diazi (Ferrari-Pérez, 1893)"
 ]
}

 The dataset includes 397 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012803-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qajk7a
title: Occurrence Download

description: A dataset containing 7403 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Harriotta raleighana Goode & Bean, 1895"
 ]
}

 The dataset includes 7403 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032244-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qbooqq
title: Occurrence Download

description: A dataset containing 214 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Modulatrix stictigula (Reichenow, 1906)"
 ]
}

 The dataset includes 214 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010180-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzzqgw
title: Occurrence Download

description: A dataset containing 15075 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Litoria tyleri Martin, Watson, Gartside, Littlejohn & Loftus-Hills, 1979"
 ]
}

 The dataset includes 15075 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021412-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eute5x
title: Occurrence Download

description: A dataset containing 5898 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Oreotrochilus chimborazo (Delattre & Bourcier, 1846)"
 ]
}

 The dataset includes 5898 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032257-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5ociv
title: Occurrence Download

description: A dataset containing 554 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhincodon typus Smith, 1828",
 "HasCoordinate is true"
 ]
}

 The dataset includes 554 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010180-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzbsgq
title: Occurrence Download

description: A dataset containing 6249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aphelocoma unicolor (Du Bus de Gisignies, 1847)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 6249 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021438-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xmytxt
title: Occurrence Download

description: A dataset containing 746 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eucalyptus dunnii Maiden"
 ]
}

 The dataset includes 746 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032279-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x1zhio
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tapirus bairdii (Gill, 1865)",
 "Country is Mexico"
 ]
}

 The dataset includes 146 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010180-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pujqca
title: Occurrence Download

description: A dataset containing 514 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Duroia micrantha (Ladbr.) Zarucchi & J.H.Kirkbr., Coupoui micrantha Ladbr., Duroia sprucei Rusby)"
 ]
}

 The dataset includes 514 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021455-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6hj2xw
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echinops heterophyllus P.H.Davis"
 ]
}

 The dataset includes 16 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032382-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8nkhnc
title: Occurrence Download

description: A dataset containing 82283 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Viet Nam",
 {
 "or" : [
 "DatasetKey is Tropicos MO Specimen Data",
 "DatasetKey is The vascular plants collection (P) at the Herbarium of the Muséum national d'Histoire Naturelle (MNHN - Paris)",
 "DatasetKey is Naturalis Biodiversity Center (NL) - Botany"
 ]
 }
 ]
}

 The dataset includes 82283 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010180-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.283fnx
title: Occurrence Download

description: A dataset containing 1238597 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Branta leucopsis (Bechstein, 1803)"
 ]
}

 The dataset includes 1238597 records from 508 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032389-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.krbwup
title: Occurrence Download

description: A dataset containing 1010541 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((1.8796086666666671 48.58410666666667, 35.924964333333335 48.58410666666667, 35.924964333333335 65.67073733333334, 1.8796086666666671 65.67073733333334, 1.8796086666666671 48.58410666666667))",
 "EventDate is 2018-11-01,2018-11-30"
 ]
}

 The dataset includes 1010541 records from 316 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021462-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12658319
title: LOBSTER (Ligand Overlays from Binding SiTe Ensemble Representatives)

description: LOBSTER ("Ligand Overlays from Binding SiTe Ensemble Representatives")  is a dataset of ligand overlays designed to evaluate small molecule superposition tools.

Based on all structures from the RCSB PDB, the dataset generation and filtering protocols are fully automated to avoid subjectivity in the selection of protein-ligand complexes and to gain the largest possible set of refined compounds. Affinity and activity data have been processed to select ligands with a high ligand efficiency.Ligands were superimposed in their crystal pose by aligning the corresponding binding pockets to so-called ensembles. For poses generated in benchmark experiments, this offers an objective comparison to the superimposed ligand crystal poses. A clustering of ensembles created with the same protein-ligand complexes ensures the diversity of the LOBSTER set.The 671 ligand ensembles comprise a total of 3212 unique ligands from 3521 different protein-ligand complexes. A total of 72 734 ligand pairs have been derived from the ensembles. Ten subsets were generated from the pairs according to the shape overlap of the pairs, quantified by the Shape Tversky Index.
DOI: 10.5281/zenodo.12658320
title: LOBSTER (Ligand Overlays from Binding SiTe Ensemble Representatives)

description: LOBSTER ("Ligand Overlays from Binding SiTe Ensemble Representatives")  is a dataset of ligand overlays designed to evaluate small molecule superposition tools.

Based on all structures from the RCSB PDB, the dataset generation and filtering protocols are fully automated to avoid subjectivity in the selection of protein-ligand complexes and to gain the largest possible set of refined compounds. Affinity and activity data have been processed to select ligands with a high ligand efficiency.Ligands were superimposed in their crystal pose by aligning the corresponding binding pockets to so-called ensembles. For poses generated in benchmark experiments, this offers an objective comparison to the superimposed ligand crystal poses. A clustering of ensembles created with the same protein-ligand complexes ensures the diversity of the LOBSTER set.The 671 ligand ensembles comprise a total of 3212 unique ligands from 3521 different protein-ligand complexes. A total of 72 734 ligand pairs have been derived from the ensembles. Ten subsets were generated from the pairs according to the shape overlap of the pairs, quantified by the Shape Tversky Index.
DOI: 10.5519/qd.5f5mbg65
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1356 records)
DOI: 10.15468/dl.d2qx5j
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pachyodes haemataria (Herrich-Schäffer)"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014797-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5b5xtj
title: Occurrence Download

description: A dataset containing 1378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Stipa krylovii Roshev."
 ]
}

 The dataset includes 1378 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014798-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m8vft8
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rutilus kutum (Kamensky, 1901))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 26 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014799-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.g0lo6jx4
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1221 records)
DOI: 10.15468/dl.25xwfc
title: Occurrence Download

description: A dataset containing 27601 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Strix aluco Linnaeus, 1758",
 "Year 2024-2024"
 ]
}

 The dataset includes 27601 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014800-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ew9utv
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Labeo bata (Hamilton, 1822))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 44 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014801-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.