cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/pmh-ouc113134149
title: Jackson v. Pasadena, City School District, excerpt

description: An excerpt from Jackson v. Pasadena City School District with "opinion" written on it in marker.
DOI: 10.6084/m9.figshare.7551755.v1
title: Additional file 6: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

description: Table S4. Trans acting methylation quantitative trait loci in the 40 genes highlighted in the EWAS. (XLS 687 kb)
DOI: 10.25549/pmh-ouc113134148
title: Jackson vs. Pasadena City School District, petition for hearing, 1963

description: The petition for hearing for Jay R. Jackson, Jr., a minor, by his guardian ad Litem, Jay R. Jackson versus Pasadena City School District, Pasadena City Board of Education, Robert G. Freeman, Luverne Lamotte, Walter T. Shatford II, Steve Salisian and James N. Stivers, Jr., all as members of said Board of Education, Robert E. Jenkins, Secretary of said Board of Education and Superintendent of Pasadena Schools, Henry Sievers, Jr., as Director of Accounting and Financial Control of the Pasadena City Board of Education in the Supreme Court of the State of California, USA, 1963. Honorable William E. Fox, judge, Samuel C. Sheats, Loren Miller, A. L. Wirin, attorneys for appellant.
DOI: 10.6084/m9.figshare.7551749
title: Additional file 5: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

description: Table S3. Cis acting methylation quantitative trait loci in the 40 genes highlighted in the EWAS. (XLS 31 kb)
DOI: 10.25549/pmh-ouc113134145
title: Jackson vs. Pasadena City School District, answer to appeal, 1963

description: The answer to petition for hearing and to briefs amicus curiae in support thereof for Jay R. Jackson, Jr., a minor, by his guardian ad Litem, Jay R. Jackson versus Pasadena City School District, Pasadena City Board of Education, Robert G. Freeman, Luverne Lamotte, Walter T. Shatford II, Steve Salisian and James N. Stivers, Jr., all as members of said Board of Education, Robert E. Jenkins, Secretary of said Board of Education and Superintendent of Pasadena Schools, Henry Sievers, Jr., as Director of Accounting and Financial Control of the Pasadena City Board of Education in the Supreme Court of the State of California, USA, 1963. Honorable William E. Fox, judge, Harold W. Kennedy, county counsel, James W. Briggs, deputy county counsel, Ronald W. Schneider, deputy county counsel.
DOI: 10.6084/m9.figshare.23280369.v1
title: Bayesian Inference Using the Proximal Mapping: Uncertainty Quantification Under Varying Dimensionality

description: In statistical applications, it is common to encounter parameters supported on a varying or unknown dimensional space. Examples include the fused lasso regression, the matrix recovery under an unknown low rank, etc. Despite the ease of obtaining a point estimate via optimization, it is much more challenging to quantify their uncertainty. In the Bayesian framework, a major difficulty is that if assigning the prior associated with a <i>p</i>-dimensional measure, then there is zero posterior probability on any lower-dimensional subset with dimension <i>d</i> &lt; <i>p</i>. To avoid this caveat, one needs to choose another dimension-selection prior on <i>d</i>, which often involves a highly combinatorial problem. To significantly reduce the modeling burden, we propose a new generative process for the prior: starting from a continuous random variable such as multivariate Gaussian, we transform it into a varying-dimensional space using the proximal mapping. This leads to a large class of new Bayesian models that can directly exploit the popular frequentist regularizations and their algorithms, such as the nuclear norm penalty and the alternating direction method of multipliers, while providing a principled and probabilistic uncertainty estimation. We show that this framework is well justified in the geometric measure theory, and enjoys a convenient posterior computation via the standard Hamiltonian Monte Carlo. We demonstrate its use in the analysis of the dynamic flow network data. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.7551767.v1
title: Additional file 9: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

description: Table S6. Transcription factor binding site information for 55 highlighted CpG sites based on ENCODE data. (XLS 96 kb)
DOI: 10.25549/pmh-ouc113132670
title: Jackson vs. Pasadena City School District, appellant's closing brief, 1963

description: The appellant's closing brief for Jay R. Jackson, Jr., a minor, by his guardian ad Litem, Jay R. Jackson versus Pasadena City School District, Pasadena City Board of Education, Robert G. Freeman, Luverne Lamotte, Walter T. Shatford II, Steve Salisian and James N. Stivers, Jr., all as members of said Board of Education, Robert E. Jenkins, Secretary of said Board of Education and Superintendent of Pasadena Schools, Henry Sievers, Jr., as Director of Accounting and Financial Control of the Pasadena City Board of Education in the District Court of Appeal, Second Appellate District, State of California, USA, 1963. Honorable William E. Fox, judge, Samuel C. Sheats, Loren Miller, A. L. Wirin, attorneys for appellant.
DOI: 10.6084/m9.figshare.7551788
title: Additional file 1: of Revisiting avian â missingâ genes from de novo assembled transcripts

description: Description of RNA-Seq data sets, recovered missing genes, mapping, expression related data. Table S1. Overview of RNA-Seq data used in this study. Table S2. List of missing genes investigated in this study. All genes were from Zhang et al. [3] and Lovell et al. [4]. Table S3. Missing genes recovered by analysis of five bird transcriptomes. Table S3A. lists the evidence supporting the presence of missing genes as described both in Zhang et al. [3] and Lovell et al. [4]; Table S3B. list the genes which have not been recovered and appear to be truly absent from the avian genome. Table S4. Mapping information of recovered missing genes in the bird genomes and homologs in SWISS-prot. Table S5. Missing gene tBLASTn against the bird genomes. Results of human homologous protein sequences blasted against the 5 bird genomes. Table S6. GC-content of high-confidence genes in five birds. Table S7. Co-linear analysis of presumed missing blocks in chicken and other animals. Table S8. Tissue-specific expression index of high-confidence genes. Table S9. The number of related studies of 446 high confidence genes in PubMed. Searchers were carried out using official gene symbols. Table S10. List of 34 new annotated missing genes in the chicken genome (Galgal5). We used the missing gene list to search the new annotation from the Galgal5 reference compared with Galgal4 reference. (XLSX 590 kb)
DOI: 10.25549/pmh-ouc113132669
title: Jackson vs. Pasadena City School District, appellant's opening brief, 1963

description: The appellant's opening brief for Jay R. Jackson, Jr., a minor, by his guardian ad Litem, Jay R. Jackson versus Pasadena City School District, Pasadena City Board of Education, Robert G. Freeman, Luverne Lamotte, Walter T. Shatford II, Steve Salisian and James N. Stivers, Jr., all as members of said Board of Education, Robert E. Jenkins, Secretary of said Board of Education and Superintendent of Pasadena Schools, Henry Sievers, Jr., as Director of Accounting and Financial Control of the Pasadena City Board of Education in the District Court of Appeal, Second Appellate District, State of California, USA, 1963. Honorable William E. Fox, judge, Samuel C. Sheats, Loren Miller, A. L. Wirin, attorneys for appellant.
DOI: 10.25549/pmh-ouc113132668
title: Partial statement, Sheats (The 1st substantive issue…)

description: A partial statement by Samuel C. Sheats about Ronald Reagan and discrimination.
DOI: 10.25549/pmh-ouc113132667
title: Statement, Sheats, 1964 (I received the copy…)

description: A statement by Samuel C. Sheats decrying racism after receiving a copy of a letter addressed to Judge Spramble, 1964.
DOI: 10.6084/m9.figshare.19607611
title: Additional file 7 of Transcriptome profiling of flower buds of male-sterile lines provides new insights into male sterility mechanism in alfalfa

description: Additional file7: Table S4. 17 genes related to tapetum and pollen development.
DOI: 10.6084/m9.figshare.7551686
title: Additional file 10: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

description: Table S7. CpG sites showing significant (FDR pâ &lt;â 0.05) association with cotinine levels in regular smokers in FTC and replication results for top 55 CpG sites in NTR and DILGOM. (XLS 42 kb)
DOI: 10.25549/pmh-ouc113132666
title: Partial statement, Sheats (A domestic issue…)

description: A partial statement by Samuel C. Sheats about public school segregation and busing.
DOI: 10.25549/pmh-ouc113132665
title: Partial statement, Sheats (These people do not believe…)

description: A partial statement by Samuel C. Sheats about public school segregation.
DOI: 10.25549/pmh-ouc113132664
title: Partial statement, Sheats (neighborhood schools...)

description: A partial statement by Samuel C. Sheats about school busing.
DOI: 10.25549/pmh-ouc113132663
title: Partial statement, Sheats (American society...)

description: A partial statement by Samuel C. Sheats against Proposition 21.
DOI: 10.25549/pmh-ouc113132662
title: Statement of Samuel C. Sheats to the Pasadena School Board, 1972-10-10

description: A statement by Samuel C. Sheats to the Pasadena School Board, Pasadena, California, USA, 1972 October 10 urging the Board to oppose Proposition 21, which would have prohibited mandatory school busing.
DOI: 10.25549/pmh-ouc113132661
title: Ethnic Achievement Committee, Report to Pasadena School Board, Sheats, 1972-03-07

description: A report to the Pasadena School Board about the Ethnic Achievement Committee, Pasadena, California, USA, 1972 March 07 by Samuel C. Sheats.
DOI: 10.25549/pmh-ouc113132558
title: Statement to Pasadena School Board, Sheats, 1968-07-16

description: A statement by Samuel C. Sheats to the Pasadena School Board, Pasadena, California, USA, 1968 July 16 about transplanting students from Washington Elementary School to Jackson Elementary School.
DOI: 10.25549/pmh-ouc113132557
title: Speech in favor of bussing, Sheats, 1967-01-17

description: A speech by Samuel C. Sheats advocating to not reduce the load of school bus service in Pasadena, California, USA, 1967 January 17.
DOI: 10.25549/pmh-ouc113132018
title: Letter honoring Mae Reese Johnson, Alice L. Pearson, Mrs. George Kennedy, Mrs. W. L. Bangham

description: A letter honoring Mae Reese Johnson written by Alice L. Pearson, Mrs. George Kennedy, and Mrs. W. L. Bangham.
DOI: 10.25549/pmh-ouc113132017
title: Mae Reese Johnson Day Camp & Conference Site, Central Branch of the Pasadena YMCA, scrapbook, 1970

description: Scrapbook by the Scattergood Association, Incorporated and Central Branch of the Pasadena Young Men's Christian Association, 235 East Holly Street, Pasadena, California, USA, about the Mae Reese Johnson Day Camp and Conference Site, 1970. The scrapbook includes details the history of the Scattergood Association, Mae Reese Johnson's accomplishments, activities and schedules for the camp, newspaper clippings about the camp, and photographs of children attending the day camp.
DOI: 10.6084/m9.figshare.7551707.v1
title: Additional file 13: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

description: Table S10. Gene boundaries, based on Ensembl transcripts for the 40 genes highlighted in the EWAS. (XLS 10 kb)
DOI: 10.25549/pmh-ouc113132016
title: Mae Reese Johnson Day Camp & Conference Site, Central Branch of the Pasadena YMCA, scrapbook, 1970

description: Scrapbook by the Scattergood Association, Incorporated and Central Branch of the Pasadena Young Men's Christian Association, 235 East Holly Street, Pasadena, California, USA, about the Mae Reese Johnson Day Camp and Conference Site, 1970. The scrapbook includes details the history of the Scattergood Association, Mae Reese Johnson's accomplishments, activities and schedules for the camp, newspaper clippings about the camp, and photographs of children attending the day camp.
DOI: 10.6084/m9.figshare.23280369
title: Bayesian Inference Using the Proximal Mapping: Uncertainty Quantification Under Varying Dimensionality

description: In statistical applications, it is common to encounter parameters supported on a varying or unknown dimensional space. Examples include the fused lasso regression, the matrix recovery under an unknown low rank, etc. Despite the ease of obtaining a point estimate via optimization, it is much more challenging to quantify their uncertainty. In the Bayesian framework, a major difficulty is that if assigning the prior associated with a <i>p</i>-dimensional measure, then there is zero posterior probability on any lower-dimensional subset with dimension <i>d</i> &lt; <i>p</i>. To avoid this caveat, one needs to choose another dimension-selection prior on <i>d</i>, which often involves a highly combinatorial problem. To significantly reduce the modeling burden, we propose a new generative process for the prior: starting from a continuous random variable such as multivariate Gaussian, we transform it into a varying-dimensional space using the proximal mapping. This leads to a large class of new Bayesian models that can directly exploit the popular frequentist regularizations and their algorithms, such as the nuclear norm penalty and the alternating direction method of multipliers, while providing a principled and probabilistic uncertainty estimation. We show that this framework is well justified in the geometric measure theory, and enjoys a convenient posterior computation via the standard Hamiltonian Monte Carlo. We demonstrate its use in the analysis of the dynamic flow network data. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.7551749.v1
title: Additional file 5: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

description: Table S3. Cis acting methylation quantitative trait loci in the 40 genes highlighted in the EWAS. (XLS 31 kb)
DOI: 10.6084/m9.figshare.7551761
title: Additional file 8: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

description: Table S5. Mediation analysis omnibus P values for the 19 meQTLs associated with serum cotinine levels. (XLS 33 kb)
DOI: 10.25549/pmh-ouc113131546
title: Exhibit captions

description: Captions for photos of notable Black Pasadena residents and families for an exhibit.
DOI: 10.25549/pmh-ouc113131530
title: Afro-American History, excerpt, 1983-02

description: Excerpt from Afro-American History, 1983 February
DOI: 10.25549/pmh-ouc113131529
title: Black History Festival, program, 1987-01/1987-02

description: Program for Black History Festival in Pasadena, California, USA, 1987 January/1987 February.
DOI: 10.6084/m9.figshare.19607590.v1
title: Additional file 10 of Transcriptome profiling of flower buds of male-sterile lines provides new insights into male sterility mechanism in alfalfa

description: Additional file10: Table S5. Primer information.
DOI: 10.6084/m9.figshare.19607707
title: Additional file 2 of Construction of a high-density genetic map and identification of QTLs related to agronomic and physiological traits in an interspecific (Gossypium hirsutum × Gossypium barbadense) F2 population

description: Additional file 2: Table S7. All markers in geneticmap.
DOI: 10.25549/pmh-ouc113131528
title: A Review of the Pasadena Unified School District's Plan for Desegregating Pasadena's Schools, Lynne Vernon, 1993-10

description: A Review of the Pasadena Unified School District's Plan for Desegregating Pasadena's Schools by Lynne Vernon, 1993 October.
DOI: 10.6084/m9.figshare.6503468
title: Identification of potential target genes of USP22 via ChIP-seq and RNA-seq analysis in HeLa cells

description: Abstract The ubiquitin-specific protease 22 (USP22) is an oncogene and its expression is upregulated in many types of cancer. In the nucleus, USP22 functions as one subunit of the SAGA to regulate gene transcription. However, the genome-wide USP22 binding sites and its direct target genes are yet clear. In this study, we characterized the potential genomic binding sites of UPS22 and GCN5 by ChIP-seq using specific antibodies in HeLa cells. There were 408 overlapping putative target genes bound by both USP22 and GCN5. Motif analysis showed that the sequences bound by USP22 and GCN5 shared two common motifs. Gene ontology (GO) and pathway analysis indicated that the genes targeted by USP22 and GCN5 were involved in different physiological processes and pathways. Further RNA-seq, GO and pathway analyses revealed that knockdown of UPS22 induced differential expression of many genes that participated in diverse physiological processes, such as metabolic process. Integration of ChIP-seq and RNA-seq data revealed that UPS22 bound to the promoters of 56 genes. These findings may provide new insights into the regulation of USP22 on gene expression during the development of cervical cancer.
DOI: 10.6084/m9.figshare.19607593
title: Additional file 1 of Transcriptome profiling of flower buds of male-sterile lines provides new insights into male sterility mechanism in alfalfa

description: Additional file1: Table S1. An overview of the transcriptome data.
DOI: 10.6084/m9.figshare.6503468.v1
title: Identification of potential target genes of USP22 via ChIP-seq and RNA-seq analysis in HeLa cells

description: Abstract The ubiquitin-specific protease 22 (USP22) is an oncogene and its expression is upregulated in many types of cancer. In the nucleus, USP22 functions as one subunit of the SAGA to regulate gene transcription. However, the genome-wide USP22 binding sites and its direct target genes are yet clear. In this study, we characterized the potential genomic binding sites of UPS22 and GCN5 by ChIP-seq using specific antibodies in HeLa cells. There were 408 overlapping putative target genes bound by both USP22 and GCN5. Motif analysis showed that the sequences bound by USP22 and GCN5 shared two common motifs. Gene ontology (GO) and pathway analysis indicated that the genes targeted by USP22 and GCN5 were involved in different physiological processes and pathways. Further RNA-seq, GO and pathway analyses revealed that knockdown of UPS22 induced differential expression of many genes that participated in diverse physiological processes, such as metabolic process. Integration of ChIP-seq and RNA-seq data revealed that UPS22 bound to the promoters of 56 genes. These findings may provide new insights into the regulation of USP22 on gene expression during the development of cervical cancer.
DOI: 10.25549/pmh-ouc113131527
title: Plan for the Integration of the Pasadena Unified School District, 1970-03

description: Plan for the Integration of Pasadena Unified School District (including revisions submitted in Supplement No. 1 on February 27, 1970), Pasadena Unified School District, Pasadena, California, USA, 1970 March.
DOI: 10.6084/m9.figshare.19607605.v1
title: Additional file 5 of Transcriptome profiling of flower buds of male-sterile lines provides new insights into male sterility mechanism in alfalfa

description: Additional file5: Table S3. Statistics of transcription factor families.
DOI: 10.6084/m9.figshare.6503222
title: Pulmonary Vein Anatomy is Associated with Cryo Kinetics during Cryoballoon Ablation for Atrial Fibrillation

description: Abstract Background: The influence of pulmonary vein (PV) anatomy on cryo kinetics during cryoballoon (CB) ablation is unclear. Objective: To investigate the relationship between PV anatomy and cryo kinetics during CB ablation for atrial fibrillation (AF). Methods: Sixty consecutive patients were enrolled. PV anatomy, including ostial diameters (long, short and corrected), ratio between short and long diameters, ostium shape (round, oval, triangular, and narrow), and drainage pattern (typical, with common trunk, common antrum, ostial branch and supernumerary PV) were evaluated on multi-detector computed tomography (MDCT) images pre-procedure. Cryo kinetics parameters [balloon freeze time from 0 to -30ºC (BFT), balloon nadir temperature (BNT) and balloon warming time from -30 to +15ºC (BWT)] were recorded during procedure. All p values are two-sided, with values of p &lt; 0.05 considered to be statistically significant. Results: 606 times of freezing cycle were accomplished. Moderate negative correlation was documented between BNT and corrected PV diameter (r = -0.51, p &lt; 0.001) when using 23-mm CBs, and mild negative correlation (r = - 0.32, p = 0.001) was found when using 28-mm CBs. Multivariate logistic regression analysis revealed that PV corrected ostial diameter (OR, 1.4; p = 0.004) predicted a BNT &lt; -51ºC when using 23-mm CBs, while PV ostium oval shape (OR, 0.3; p = 0.033) and PV locations (left inferior PV: OR, 0.04; p = 0.005; right superior PV: OR, 4.3; p = 0.025) predicted BNT &lt; -51ºC when using 28-mm CBs. Conclusions: MDCT can provide PV anatomy accurate evaluation prior CB ablation. PV anatomy is associated with cryo kinetics during ablation.
DOI: 10.6084/m9.figshare.6503222.v1
title: Pulmonary Vein Anatomy is Associated with Cryo Kinetics during Cryoballoon Ablation for Atrial Fibrillation

description: Abstract Background: The influence of pulmonary vein (PV) anatomy on cryo kinetics during cryoballoon (CB) ablation is unclear. Objective: To investigate the relationship between PV anatomy and cryo kinetics during CB ablation for atrial fibrillation (AF). Methods: Sixty consecutive patients were enrolled. PV anatomy, including ostial diameters (long, short and corrected), ratio between short and long diameters, ostium shape (round, oval, triangular, and narrow), and drainage pattern (typical, with common trunk, common antrum, ostial branch and supernumerary PV) were evaluated on multi-detector computed tomography (MDCT) images pre-procedure. Cryo kinetics parameters [balloon freeze time from 0 to -30ºC (BFT), balloon nadir temperature (BNT) and balloon warming time from -30 to +15ºC (BWT)] were recorded during procedure. All p values are two-sided, with values of p &lt; 0.05 considered to be statistically significant. Results: 606 times of freezing cycle were accomplished. Moderate negative correlation was documented between BNT and corrected PV diameter (r = -0.51, p &lt; 0.001) when using 23-mm CBs, and mild negative correlation (r = - 0.32, p = 0.001) was found when using 28-mm CBs. Multivariate logistic regression analysis revealed that PV corrected ostial diameter (OR, 1.4; p = 0.004) predicted a BNT &lt; -51ºC when using 23-mm CBs, while PV ostium oval shape (OR, 0.3; p = 0.033) and PV locations (left inferior PV: OR, 0.04; p = 0.005; right superior PV: OR, 4.3; p = 0.025) predicted BNT &lt; -51ºC when using 28-mm CBs. Conclusions: MDCT can provide PV anatomy accurate evaluation prior CB ablation. PV anatomy is associated with cryo kinetics during ablation.
DOI: 10.25549/pmh-ouc113131526
title: An Historical Perspective of the Public Schools of Pasadena and School Desegregation, pamphlet, 2001-05-04

description: A pamphlet titled "An Historical Perspective of the Public Schools of Pasadena and School Desegregation" published 2001 May 04. Includes "Integration: Laws, Guidelines, and Plans, Ethnic Distribution in Pasadena Schools, Comparative Data on Quality of Education at High Schools in Pasadena" by League of Women Voters of Pasadena, 160 North Oakland Avenue, Pasadena, California, USA, 1968 December.
DOI: 10.6084/m9.figshare.19607742
title: Additional file 5 of Identification and prognostic analysis of biomarkers to predict the progression of pancreatic cancer patients

description: Additional file 5. The upregulated and downregulated genes in the FN1hi group compared with the FN1low group.