cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/zbcqw-cm636
title: sporulating Alongum purified sacculi

description: Alongum purified sacculi
description: <strong>Tilt Series Date:</strong> 2011-01-03</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation medium</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-01-03-6/3dimage_25621/</p>06_full.rec,  Reconstruction (Pixel Size 1.9 nm), 335.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-01-03-6/3dimage_25621/06_full.rec"
        > <i class="download icon"></i> Download </a></p>

        11jan03a_sq5_006.mrc,  Tilt Series (Pixel Size 0.95 nm), 738.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-01-03-6/rawdata/11jan03a_sq5_006.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.nhye92
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aplocheilichthys lacustris, Lacustricola lacustris, Aplocheilichthys macrurus, Lacustricola macrurus, Aplocheilichthys maculatus, Lacustricola maculatus, Aplocheilichthys mediolateralis, Lacustricola mediolateralis, Aplocheilichthys nigrolateralis, Lacustricola nigrolateralis, Aplocheilichthys omoculatus, Lacustricola omoculatus, Aplocheilichthys rudolfianus, Micropanchax rudolfianus, Aplocheilichthys spilauchen, Aplocheilichthys usanguensis, Lacustricola usanguensis, Aplocheilichthys vitschumbaensis, Lacustricola vitschumbaensis, Aplocheilus panchax, Apricaphanius saourensis, Archiaphyosemion guineense, Aristochromis christyi, Arius africanus, Arius festinus, Arius gigas, Arius latiscutatus, Arius madagascariensis, Arius uncinatus, Arnoglossus imperialis, Arnoldichthys spilopterus, Asprotilapia leptura, Xenotilapia leptura, Astatoreochromis alluaudi, Astatoreochromis straeleni, Astatoreochromis vanderhorsti, Astatotilapia bloyeti, Astatotilapia burtoni, Astatotilapia calliptera, Astatotilapia desfontainii, Astatotilapia paludinosa, Haplochromis paludinosus, Astatotilapia stappersii, Astatotilapia tweddlei, Atherina boyeri, Atherina caspia, Atherinomorus duodecimalis, Atopochilus chabanaudi, Atopochilus christyi, Atopochilus macrocephalus, Atopochilus mandevillei, Atopochilus pachychilus, Atopochilus savorgnani, Atopochilus vogti, Atopodontus adriaensi, Auchenoglanis biscutatus, Auchenoglanis occidentalis, Aulonocara aquilonium, Aulonocara auditor, Aulonocara baenschi, Aulonocara brevinidus, Aulonocara brevirostre, Aulonocara ethelwynnae, Aulonocara gertrudae, Aulonocara guentheri, Aulonocara hueseri, Aulonocara jacobfreibergi, Aulonocara kandeense, Aulonocara kandeensis, Aulonocara koningsi, Aulonocara korneliae, Aulonocara maylandi, Aulonocara nyassae, Aulonocara rostratum, Aulonocara saulosi, Aulonocara stonemani, Aulonocara stuartgranti, Aulonocara trematocephalum, Aulonocranus dewindti, Aurigequula fasciata, Auriglobus modestus, Austroglanis barnardi, Austroglanis gilli, Austroglanis sclateri, Awaous aeneofuscus, Awaous bustamantei, Awaous commersoni, Awaous lateristriga, Awaous macrorhynchus, Bagrus bajad, Bagrus caeruleus, Bagrus degeni, Bagrus docmak, Bagrus filamentosus, Bagrus lubosicus, Bagrus meridionalis, Bagrus orientalis, Bagrus ubangensis, Bagrus urostigma)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((19.1382 29.0599,10.1382 29.0599,10.1382 20.0599,19.1382 20.0599,19.1382 29.0599))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005768-250827131500795/datasets/export for details.
DOI: 10.22002/yxxtv-k5770
title: Germinating A. longum spores

description: A. longum spores
description: <strong>Tilt Series Date:</strong> 2009-04-23</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth medium</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-04-23-5/rawdata/</p>09apr23c_grid4a_005.mrc,  Tilt Series (Pixel Size 0.95 nm), 922.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-04-23-5/rawdata/09apr23c_grid4a_005.mrc"
        > <i class="download icon"></i> Download </a></p>

        spore5_full.rec,  Reconstruction (Pixel Size 1.9 nm), 748.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-04-23-5/3dimage_25905/spore5_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/7r0qf-asx62
title: M222R chemoreceptor mutant

description: M222R HAMP mutant locked in 'CHeA inactivating state'
description: <strong>Tilt Series Date:</strong> 2010-03-19</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> John Parkinson </p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in TB medium, induced with salycilate (0.6 µM) for three hours, then penicillin treated for one hour </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2010-03-19-6/rawdata/</p>10mar19a_EcoliM222K_006.st,  Tilt Series (Pixel Size 0.632 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2010-03-19-6/rawdata/10mar19a_EcoliM222K_006.st"
        > <i class="download icon"></i> Download </a></p>

        10mar19a_EcoliM222K_006.rec,  Reconstruction (Pixel Size 0.632 nm), 283.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2010-03-19-6/3dimage_12789/10mar19a_EcoliM222K_006.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9tybj-xm208
title: arpc3(-/-)

description: Raw data files of arpc3(-/-)
description: <strong>Tilt Series Date:</strong> 2013-08-23</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> MEF cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -14.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Dorit Hanein, Sanford Burnham Medical Research Inst. provided plunge-freeze sample grids</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2013-08-23-24/rawdata/</p>atlas10022.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2013-08-23-24/rawdata/atlas10022.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas10022_part131_64.rec,  Reconstruction (Pixel Size 2.4 nm), 267.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2013-08-23-24/3dimage_30063/atlas10022_part131_64.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/my5k8-18f37
title: Azospirillum WT

description: Azospirillum brasilense strain SP7 (WT)
description: <strong>Tilt Series Date:</strong> 2014-05-07</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Azospirillum brasilense</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Gladys Alexandre</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-05-07-23/3dimage_42279/</p>AzoAtlasCMay0008_part121_3.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-05-07-23/3dimage_42279/AzoAtlasCMay0008_part121_3.rec"
        > <i class="download icon"></i> Download </a></p>

        AzoAtlasCMay0008.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-05-07-23/rawdata/AzoAtlasCMay0008.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/vea4y-b1982
title: Haloarcula argentinensis

description: Haloarcula argentinensis
description: <strong>Tilt Series Date:</strong> 2014-06-24</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Haloarcula argentinensis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
  aba2014-06-24-19_slicer4071.jpg: S.layer H. argentinensis aba2014-06-24-19_slicer4072.jpg: FFT of S.layer H. argentinensis
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-06-24-19/rawdata/</p>Argentinensis0014.mrc,  Tilt Series (Pixel Size 0.33 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-06-24-19/rawdata/Argentinensis0014.mrc"
        > <i class="download icon"></i> Download </a></p>

        Argentinensis0014_full.rec,  Reconstruction (Pixel Size 1.32 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-06-24-19/3dimage_43982/Argentinensis0014_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.q38zw5
title: Occurrence Download

description: A dataset listing the 42427 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "OccurrenceStatus is Present",
 "TaxonKey is Insecta",
 "Year 2000-2020"
 ]
}

 The dataset's 42427 records were derived from 1015 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005755-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.an9y48
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andesanthus paleaceus (Triana) P.J.F.Guim. & Michelang."
 ]
}

 The dataset includes 149 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022537-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14917751
title: MERMaid: Universal multimodal reaction mining from PDFs - prompts and raw data

description: Compilation of the prompts used, together with the raw response files from the Dataraider and KGWizard modules.
DOI: 10.5281/zenodo.14917752
title: MERMaid: Universal multimodal reaction mining from PDFs - prompts and raw data

description: Compilation of the prompts used, together with the raw response files from the Dataraider and KGWizard modules.
DOI: 10.5281/zenodo.15593312
title: MERMaid: Universal multimodal reaction mining from PDFs - prompts and raw data

description: Compilation of the prompts used, together with the raw response files from the Dataraider and KGWizard modules.
DOI: 10.5281/zenodo.15602120
title: MERMaid: Universal multimodal reaction mining from PDFs - prompts and raw data

description: Compilation of the prompts used, together with the raw response files from the Dataraider and KGWizard modules.
DOI: 10.3886/e226085
title: Code and Data for: The Value of Software

description: Software is one of the most important assets that needs to be priced in the digital economy. It has emerged as a disruptive technology, with companies primarily valued for their software offerings growing from 2% to 13% of market share between 1996 and 2023. We document persistent anomalies in growth forecasts and stock returns for software companies, indicating significant deviations from rational expectations over multiple decades. Our findings are consistent with Bayesian investors gradually learning about software's growing importance, highlighting how markets can be very slow to discern fundamental shifts from transient shocks in noisy data.<br>
DOI: 10.3886/e226085v1
title: Code and Data for: The Value of Software

description: Software is one of the most important assets that needs to be priced in the digital economy. It has emerged as a disruptive technology, with companies primarily valued for their software offerings growing from 2% to 13% of market share between 1996 and 2023. We document persistent anomalies in growth forecasts and stock returns for software companies, indicating significant deviations from rational expectations over multiple decades. Our findings are consistent with Bayesian investors gradually learning about software's growing importance, highlighting how markets can be very slow to discern fundamental shifts from transient shocks in noisy data.<br>
DOI: 10.48320/33b65560-6dba-4aec-baa3-49253169463b
title: Review of ERIC (2001-2024): European Social Survey
DOI: 10.15468/dl.4guyds
title: Occurrence Download

description: A dataset containing 1534 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dioscorea acanthogene Rusby, Dioscorea alainii Raz, Dioscorea amazonum Mart. ex Griseb.)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1534 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022814-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/2txbs-9aa57
title: bl21_1-1-4_sq1_cell4

description: Raw data files of bl21_1-1-4_sq1_cell4
description: <strong>Tilt Series Date:</strong> 2019-02-22</p>
<strong>Data Taken By:</strong> William Nicolas</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> PK1, BL21 dHisdHA RQABpCDF+EFGpRSF S2-ZC</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: °, constant angular increment, dosage: 145.0 eV/Å²,  defocus: -4.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 3mL culture started from glycerol stock. TB + salts + Kan (40ug/mL) + Strepto (70ug/mL) incubated at 37C - 220rpm until OD 1.5 (overdue a little bit). IPTG added and incubated at 17C-ON.OD at 3.4 before freezing the next day.</p>
<strong>Sample Preparation:</strong> Diluted to OD 0.4 - Broad 100% 22C - Manual backblotting 4s, glare seen at 2s</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wnj2019-02-22-9/rawdata/</p>bl21_1-1-4_sq1_cell4_orig.st,  Tilt Series (Pixel Size 0.54 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wnj2019-02-22-9/rawdata/bl21_1-1-4_sq1_cell4_orig.st"
        > <i class="download icon"></i> Download </a></p>

        bl21_1-1-4_sq1_cell4.rec,  Reconstruction (Pixel Size 2.164 nm), 179.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wnj2019-02-22-9/3dimage_101712/bl21_1-1-4_sq1_cell4.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9p8hm-1cv69
title: Pseudomonas aeruinosa

description: This is from the transposon mutant library of Pseudomonas aeruginosa PAO1. The aim is to check for the presence of PL sub complexes in the absence of FliF protein.
description: <strong>Tilt Series Date:</strong> 2018-10-01</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -9.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Serial EM</p>
<strong>Collaborators and Roles:</strong> I obtained these cells from Dianne Newmann lab (Shannon Park)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The cells were grown overnight at 37 C in LB with 100 ug/ml gentamicin</p>
<strong>Sample Preparation:</strong> Samples from the overnight culture were used to prepare the grids.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-10-01-31/rawdata/</p>Test_Pseudomonas_dfliF_31_fix.mrc,  Tilt Series (Pixel Size 0.37 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-10-01-31/rawdata/Test_Pseudomonas_dfliF_31_fix.mrc"
        > <i class="download icon"></i> Download </a></p>

        Test_Pseudomonas_dfliF_31_fix_part101_31.rec,  Reconstruction (Pixel Size 1.48 nm), 444.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-10-01-31/3dimage_97330/Test_Pseudomonas_dfliF_31_fix_part101_31.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/59ans-2fa65
title: JV9298

description: Legionella pneumophila JV9298 DotF-GFP DotB E191K
description: <strong>Tilt Series Date:</strong> 2020-04-23</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -4.0 μm,  magnification: 33000x. </p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, tomo3d</p>
<strong>Collaborators and Roles:</strong> Sample preparation & data collection: Yuxi Liu Data processing: Phyllis Wang & Yuxi Liu</p>
<strong>Purification / Growth Conditions / Treatment:</strong> O.D. 2.5-3.0 in AYE</p>
<strong>Sample Preparation:</strong> Quantifoil R2/2 copper grid, 10nm gold, 100% humidity, 25deg C, 4uL of 2X concentrated cells Blotting: force 6, blot 3sec, wait 1sec</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2020-04-23-259/3dimage_124187/</p>JV9298_PD-1-3_183_SIRT_1k.mrc,  Reconstruction (Pixel Size 1.04 nm), 2.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        JV9298_PD-1-3_183.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2020-04-23-259/rawdata/JV9298_PD-1-3_183.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/h6e7p-b4209
title: JV9298

description: Legionella pneumophila JV9298 DotF-GFP DotB E191K
description: <strong>Tilt Series Date:</strong> 2020-04-23</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -4.0 μm,  magnification: 33000x. </p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, tomo3d</p>
<strong>Collaborators and Roles:</strong> Sample preparation & data collection: Yuxi Liu Data processing: Phyllis Wang & Yuxi Liu</p>
<strong>Purification / Growth Conditions / Treatment:</strong> O.D. 2.5-3.0 in AYE</p>
<strong>Sample Preparation:</strong> Quantifoil R2/2 copper grid, 10nm gold, 100% humidity, 25deg C, 4uL of 2X concentrated cells Blotting: force 6, blot 3sec, wait 1sec</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2020-04-23-153/3dimage_123986/</p>JV9298_PD-1-3_539_SIRT_1k.mrc,  Reconstruction (Pixel Size 1.04 nm), 2.1 GB  
        
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        JV9298_PD-1-3_539.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.7 GB  
        
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