cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.14272/ogjztzsdxocmns-uhfffaoysa-n/chmo0000630.2
title: infrared absorption spectroscopy (IR) ()
title: InChI=1S/C16H16O/c17-16-11-14-6-5-12-1-3-13(4-2-12)7-9-15(16)10-8-14/h1-4,8,10-11,17H,5-7,9H2

description: dataset for infrared absorption spectroscopy (IR)
DOI: 10.14272/ogjztzsdxocmns-uhfffaoysa-n.5
title: 4-Hydroxy[2.2]paracyclophane
title: InChI=1S/C16H16O/c17-16-11-14-6-5-12-1-3-13(4-2-12)7-9-15(16)10-8-14/h1-4,8,10-11,17H,5-7,9H2

description: This is a physical chemical entity[CHEBI_24431] associated with a molecule[CHEBI_25367].
 The molecule[CHEBI_25367] can be described by the following structural desciptors[cheminf_000085]:
 InChI descriptor[cheminf_000113]: InChI=1S/C16H16O/c17-16-11-14-6-5-12-1-3-13(4-2-12)7-9-15(16)10-8-14/h1-4,8,10-11,17H,5-7,9H2, and canonical SMILES descriptor[cheminf_000007]: Oc1cc2CCc3ccc(CCc1cc2)cc3, and by the IUPAC name[cheminf_000107]: .
 
 The physical chemical entity[CHEBI_24431] has a component solvent[CHEBI_46787] which is described by the canonical SMILES descriptor[cheminf_000007]:
 
 The physical chemical entity[CHEBI_24431] has the following Sample ID as registered in the research data repository chemotion (www.chemotion-repository.net, https://doi.org/10.25504/FAIRsharing.iagXcR): CRS-57201

 The physical chemical entity[CHEBI_24431] can be described by the physical descriptors [CHEMINF_000025]:
 Melting point descriptor[CHEMINF_000256]: 223.0 (°C)
 Boiling point descriptor[CHEMINF_000257]: 
 Refractive index descriptor[CHEMINF_000253]:

 The physical chemical entity[CHEBI_24431] can be further described by the following assays[OBI:0000070][CHMO:0001133]:
 
 CHMO:0001150 | 1H--1H correlation spectroscopy (1H-1H COSY)
 
 CHMO:0000593 | 1H nuclear magnetic resonance spectroscopy (1H NMR)
 
 CHMO:0000630 | infrared absorption spectroscopy (IR)
 
 CHMO:0001146 | 1H--13C heteronuclear single quantum coherence (1H-13C HSQC)
 
 CHMO:0000595 | 13C nuclear magnetic resonance spectroscopy (13C NMR)
 
 CHMO:0000482 | electrospray ionisation mass spectrometry (ESMS)
 
 The physical chemical entity[CHEBI_24431] was deposited to the Molecule Archive of the Karlsruhe Insitute of Technology (KIT) with the following Sample ID: 

 Used ontologies:
 CHEBI - Chemical Entities of Biological Interest
 CHEMINF - chemical information ontology (information entities about chemical entities)
 CHMO - Chemical Methods Ontology
 OBI - Ontology for Biomedical Investigations
DOI: 10.15468/dl.zcwque
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hibiscus gossweileri Sprague"
 ]
}

 The dataset includes 20 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020839-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aqjzf9
title: Occurrence Download

description: A dataset containing 654 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1998-2018",
 "Geometry POLYGON((-5.58545 35.94287,-4.26709 36.57568,-2.66308 36.62402,-1.94678 36.57568,-1.5249 37.26123,-0.55371 37.39746,-0.61084 37.82373,0.42627 38.70264,-0.15381 39.37061,0.54932 40.35498,1.18213 40.79443,2.21924 41.11084,3.32666 41.56787,3.43213 42.62256,-1.85449 43.58496,-7.99365 43.90576,-9.50537 43.22021,-8.94287 40.8999,-9.8042 38.66748,-9.11865 36.83935,-7.04443 36.92724,-6.41162 36.18897,-5.58545 35.94287))",
 "HasCoordinate is true",
 "TaxonKey is Lynx pardinus (Temminck, 1827)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 654 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028397-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rvxdf7
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onthophagus aureofuscus Bates, 1887"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186694-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9su6ed
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hibiscus guerkeanus Hochr."
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020873-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t0o2is
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Genetta piscivora (J.A.Allen, 1919)"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028398-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q68dtm
title: Occurrence Download

description: A dataset containing 277 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Draba reptans (Lam.) Fernald",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 277 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163024-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxt3ud
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hibiscus gwandensis Exell"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020878-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnnisq
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((30.31888 3.93066,65.68112 3.93066,65.68112 18.06934,30.31888 18.06934,30.31888 3.93066))",
 "HasCoordinate is true",
 "TaxonKey is Boswellia globosa Thulin",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028398-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u35aza
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Draba cuneifolia Nutt. ex Torr. & A.Gray",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 31 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163017-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uekdhv
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Geometry POLYGON((-10.64913 34.3084,-15.84399 24.34564,-20.17027 15.38842,-9.54948 3.70839,3.76084 5.48071,12.73445 -7.02496,9.48741 -22.82915,14.92366 -27.32671,15.68326 -35.62727,26.52601 -36.87634,38.53048 -23.54108,46.30505 -26.90807,53.57504 -17.58856,49.58193 -11.49975,43.14022 -10.40865,44.22475 -1.7803,53.53972 10.50201,50.92395 13.67163,43.67487 11.11003,36.71626 21.46022,32.5077 32.11799,32.00411 33.3225,26.7249 32.2417,18.84508 33.74677,15.21115 32.90615,11.60175 34.25812,11.82921 35.56111,10.45347 37.29731,9.29798 37.34526,4.10132 37.73252,-10.64913 34.3084))",
 "TaxonKey is Aegypius monachus (Linnaeus, 1766)",
 "CoordinateUncertaintyInMeters is less than or equal to 100"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008795-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4acm3
title: Occurrence Download

description: A dataset containing 163 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astronium concinnum Schott"
 ]
}

 The dataset includes 163 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028398-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15147025
title: Table 6 in Morphological and molecular evidence for cryptic species of springsnails [genus Pseudamnicola (Corrosella) (Mollusca, Caenogastropoda, Hydrobiidae)]

description: Table 6. Female and male genitalia measurements (in mm) of two females and four males of Pseudamnicola (Corrosella) astieri from d’Argens spring, Seillons, France and four females and four males of Pseudamnicola (Corrosella) hauffei sp. n. from Los Nogales spring, Benafer, Castellón, Spain.
Pseudamnicola (Corrosella) astieriPseudamnicola (Corrosella) hauffei sp. n.Mean<br/> (Max-Min)S D NCVMean<br/> (Max-Min)S D NCV
description: Published as part of Delicado, Diana & Ramos, Marian A., 2012, Morphological and molecular evidence for cryptic species of springsnails [genus Pseudamnicola (Corrosella) (Mollusca, Caenogastropoda, Hydrobiidae)], pp. 59 in ZooKeys 190 on page 59, DOI: 10.3897/zookeys.190.2555
DOI: 10.5281/zenodo.15147026
title: Table 7 in Morphological and molecular evidence for cryptic species of springsnails [genus Pseudamnicola (Corrosella) (Mollusca, Caenogastropoda, Hydrobiidae)]

description: Table 7. Nervous system measurements (in mm) of Pseudamnicola (Corrosella) astieri from d’Argens spring, Seillons, France and Pseudamnicola (Corrosella) hauffei sp. n. from Los Nogales spring, Benafer, Castellón, Spain.
Pseudamnicola (Corrosella) astieri <br/> (n=5)Pseudamnicola (Corrosella) hauffei sp. n.<br/> (n=5)Mean<br/> (Max-Min)S D NCVMean<br/> (Max-Min)S D NCV
description: Published as part of Delicado, Diana & Ramos, Marian A., 2012, Morphological and molecular evidence for cryptic species of springsnails [genus Pseudamnicola (Corrosella) (Mollusca, Caenogastropoda, Hydrobiidae)], pp. 61 in ZooKeys 190 on page 61, DOI: 10.3897/zookeys.190.2555
DOI: 10.5281/zenodo.15147027
title: Table 7 in Morphological and molecular evidence for cryptic species of springsnails [genus Pseudamnicola (Corrosella) (Mollusca, Caenogastropoda, Hydrobiidae)]

description: Table 7. Nervous system measurements (in mm) of Pseudamnicola (Corrosella) astieri from d’Argens spring, Seillons, France and Pseudamnicola (Corrosella) hauffei sp. n. from Los Nogales spring, Benafer, Castellón, Spain.
Pseudamnicola (Corrosella) astieri <br/> (n=5)Pseudamnicola (Corrosella) hauffei sp. n.<br/> (n=5)Mean<br/> (Max-Min)S D NCVMean<br/> (Max-Min)S D NCV
description: Published as part of Delicado, Diana & Ramos, Marian A., 2012, Morphological and molecular evidence for cryptic species of springsnails [genus Pseudamnicola (Corrosella) (Mollusca, Caenogastropoda, Hydrobiidae)], pp. 61 in ZooKeys 190 on page 61, DOI: 10.3897/zookeys.190.2555
DOI: 10.6084/m9.figshare.27439239.v1
title: Metabolomics analysis reveals the effects of high dietary copper on mitochondria-mediated autophagy and apoptosis in spleen of broiler chicken

description: Copper (Cu) is a necessary micro-element and plays important roles in many biochemical processes. However, excessive Cu intake can lead to multi-organ toxicity, especially in the spleen. To gain further insights into the specific mechanisms of splenic toxicity associated with Cu-induced metabolic disorders, 192 one-day-old chickens were selected and randomly divided into four groups for this study. The broilers were fed with diets containing Cu at final concentrations of 11, 110, 220 and 330 mg/kg for 49 days. The results showed that high Cu dietary caused nuclear shrinkage and mitochondrial vacuolization in spleen, and induced splenic injury through regulating the glutathione metabolism, pentose and gluconate interconversion, tryptophan metabolism and glycerophosphatidylcholine metabolism pathways. Moreover, excess Cu could disorder the mitochondrial dynamics via up-regulating the levels of Drp1, Parkin PINK1, and Dynein, and down-regulating the levels of Mfn1, Mfn2 and OPA1. Cu-treatment increased the levels of LC3A, LC3B, mTOR, Beclin1, ATG5, and decreased the p62 level to promote autophagy of splenocytes. Meanwhile, high dose of Cu promoted the splenocytes apoptosis by ascend the levels of p53, BAK-1, Bax, Cyt C and Caspase-3 and descend the level of Bcl-2. These results demonstrated that high dietary Cu could cause autophagy and apoptosis via inducing metabolic disturbances and disordering mitochondrial dynamics in spleen of broiler chicken.
DOI: 10.6084/m9.figshare.27826754
title: The Hcp2b of APEC induces mitochondrial damage in chicken DF-1 cells

description: The haemolysin co-regulatory protein (Hcp) plays a significant role in the pathogenicity of avian pathogenic <i>Escherichia coli</i> (APEC) as an effector protein of the type VI secretion system (T6SS) to the host. Meanwhile, mitochondria in the host are the target of effector proteins of various secretion systems. Here, we explored the effects of APEC effector Hcp2b on the mitochondria of DF-1 cells and found that Hcp2b results in damage in mitochondria. Next, 68 target proteins in DF-1 cell lysates were identified that interacted with Hcp2b by streptavidin-biotin pull-down assay combined with LC-MS/MS, among which ADP/ATP transporter carrier (SLC25A4) is a mitochondria-associated protein; protein docking analysis showed that Hcp2b binds well to SLC25A4. Therefore, we hypothesize that the Hcp2b contributes to mitochondrial damage in DF-1 cells through interaction with the SLC25A4.
DOI: 10.6084/m9.figshare.27826754.v1
title: The Hcp2b of APEC induces mitochondrial damage in chicken DF-1 cells

description: The haemolysin co-regulatory protein (Hcp) plays a significant role in the pathogenicity of avian pathogenic <i>Escherichia coli</i> (APEC) as an effector protein of the type VI secretion system (T6SS) to the host. Meanwhile, mitochondria in the host are the target of effector proteins of various secretion systems. Here, we explored the effects of APEC effector Hcp2b on the mitochondria of DF-1 cells and found that Hcp2b results in damage in mitochondria. Next, 68 target proteins in DF-1 cell lysates were identified that interacted with Hcp2b by streptavidin-biotin pull-down assay combined with LC-MS/MS, among which ADP/ATP transporter carrier (SLC25A4) is a mitochondria-associated protein; protein docking analysis showed that Hcp2b binds well to SLC25A4. Therefore, we hypothesize that the Hcp2b contributes to mitochondrial damage in DF-1 cells through interaction with the SLC25A4.
DOI: 10.6084/m9.figshare.28060801
title: Molecular detection of <i>Chlamydia psittaci</i> in birds: a systematic review

description: Molecular methods are currently the most sensitive for detecting <i>Chlamydia psittaci</i> in birds. Most laboratories have developed their own molecular assays or adapted published protocols, often making slight modifications to fit their specific study purposes. The sensitivity and specificity of a molecular test depend on the target gene, primer sequences, types of molecular test, DNA extraction method, and sampling methods. We reviewed 120 articles published between 2000 and 2020 to compile information on the molecular detection of <i>C. psittaci</i> in birds. Of the ten genomic targets currently available to detect <i>C. psittaci</i> in birds, the <i>ompA</i> gene was the most widely used. In published surveillance studies, of the fourteen molecular test types, conventional PCR and quantitative PCR were applied the most. A testing strategy using a hierarchical approach that includes molecular tests of genus- and species-specific targets is recommended to detect other avian chlamydial species besides the well-recognized <i>C. psittaci</i>. Samples should be sourced from both the respiratory and gastrointestinal tracts whenever possible for better accuracy. High-quality DNA can be obtained when the sample is preserved in optimal medium and temperature, and an optimized DNA extraction protocol is applied. Standardization and validation of molecular <i>Chlamydia</i> tests are needed to enhance the comparability and reliability of assays to detect <i>C. psittaci</i> and other chlamydiae species in birds. <b>RESEARCH HIGHLIGHTS</b>Hierarchical molecular testing is recommended for the detection of avian <i>C. psittaci</i>.Key molecular tests for surveillance were conventional PCR and quantitative PCR.The most used genomic target to detect <i>C. psittaci</i> in birds was the <i>ompA</i> gene. Hierarchical molecular testing is recommended for the detection of avian <i>C. psittaci</i>. Key molecular tests for surveillance were conventional PCR and quantitative PCR. The most used genomic target to detect <i>C. psittaci</i> in birds was the <i>ompA</i> gene.
DOI: 10.6084/m9.figshare.28060801.v2
title: Molecular detection of <i>Chlamydia psittaci</i> in birds: a systematic review

description: Molecular methods are currently the most sensitive for detecting <i>Chlamydia psittaci</i> in birds. Most laboratories have developed their own molecular assays or adapted published protocols, often making slight modifications to fit their specific study purposes. The sensitivity and specificity of a molecular test depend on the target gene, primer sequences, types of molecular test, DNA extraction method, and sampling methods. We reviewed 120 articles published between 2000 and 2020 to compile information on the molecular detection of <i>C. psittaci</i> in birds. Of the ten genomic targets currently available to detect <i>C. psittaci</i> in birds, the <i>ompA</i> gene was the most widely used. In published surveillance studies, of the fourteen molecular test types, conventional PCR and quantitative PCR were applied the most. A testing strategy using a hierarchical approach that includes molecular tests of genus- and species-specific targets is recommended to detect other avian chlamydial species besides the well-recognized <i>C. psittaci</i>. Samples should be sourced from both the respiratory and gastrointestinal tracts whenever possible for better accuracy. High-quality DNA can be obtained when the sample is preserved in optimal medium and temperature, and an optimized DNA extraction protocol is applied. Standardization and validation of molecular <i>Chlamydia</i> tests are needed to enhance the comparability and reliability of assays to detect <i>C. psittaci</i> and other chlamydiae species in birds. <b>RESEARCH HIGHLIGHTS</b>Hierarchical molecular testing is recommended for the detection of avian <i>C. psittaci</i>.Key molecular tests for surveillance were conventional PCR and quantitative PCR.The most used genomic target to detect <i>C. psittaci</i> in birds was the <i>ompA</i> gene. Hierarchical molecular testing is recommended for the detection of avian <i>C. psittaci</i>. Key molecular tests for surveillance were conventional PCR and quantitative PCR. The most used genomic target to detect <i>C. psittaci</i> in birds was the <i>ompA</i> gene.
DOI: 10.6084/m9.figshare.28194272
title: Two-component system UhpAB facilitates the pathogenicity of avian pathogenic <i>Escherichia coli</i> through biofilm formation and stress responses

description: Avian pathogenic <i>Escherichia coli</i> (APEC) is an important zoonotic pathogen that infects avian species by colonizing the gastrointestinal, respiratory, or reproductive tracts, leading to significant economic losses to the poultry industry worldwide and threatening food security and human health. APEC has evolved the two-component signal transduction system (TCS) to adapt and respond to extracellular environmental stresses, which are produced when the host is invaded by APEC. Here, we focus on the effect of the UhpAB TCS on the pathogenicity of APEC. The results in this study showed that the UhpAB TCS contributed to the pathogenicity of APEC in a chicken infection model. The electrophoretic mobility shift assays (EMSA) confirmed that UhpAB specifically bound to the promoters of <i>fepG</i>, <i>ldrD</i>, <i>ycgV</i>, and <i>ydeI</i>, and activated their expression, measured using real-time reverse transcription PCR (real-time RT–PCR). Furthermore, the UhpAB TCS could promote biofilm formation by activating the expression of biofilm master transcriptional regulator encoding gene <i>csgD</i> and enhance stress tolerance by activating the expression of stress protein encoding genes <i>uspA</i> and <i>bhsA</i>, thereby assisting APEC to evade host immune responses and inflammatory responses, and increasing the pathogenicity of APEC. These findings deepen our understanding of the pathogenic mechanism in APEC and offer new perspectives for further studies on the prevention and control of APEC infection. <b>RESEARCH HIGHLIGHTS</b>UhpAB increases the pathogenicity of APEC.UhpAB activates the expression of virulence genes <i>fepG</i>, <i>ldrD</i>, <i>ycgV</i>, and <i>ydeI</i>.UhpAB promotes biofilm formation and enhances stress tolerance.UhpAB contributes to APEC evading attack by the host immune system. UhpAB increases the pathogenicity of APEC. UhpAB activates the expression of virulence genes <i>fepG</i>, <i>ldrD</i>, <i>ycgV</i>, and <i>ydeI</i>. UhpAB promotes biofilm formation and enhances stress tolerance. UhpAB contributes to APEC evading attack by the host immune system.