cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3596135_d10.v1
title: Additional file 2: Table S2. of Comparison of the miRNA profiles in HPV-positive and HPV-negative tonsillar tumors and a model system of human keratinocyte clones

description: Significant (Pâ
DOI: 10.6084/m9.figshare.c.3596186_d1.v1
title: Additional file 1: of Modeling leukocyte trafficking at the human blood-nerve barrier in vitro and in vivo geared towards targeted molecular therapies for peripheral neuroinflammation

description: GBS patient mononuclear leukocyte trafficking at the blood-nerve barrier in vitro . A video of merged digital photomicrographs in real time acquired between 10 and 15 min following infusion of an untreated GBS (AIDP variant) leukocytes across a cytokine stimulated monolayer of human primary endoneurial endothelial cells demonstrates leukocyte rolling, firm adhesion (phase bright), and some transmigration (phase dark) (Video 1). Following incubation of the same patient’s leukocytes with 500 ng/mL function neutralizing mouse anti-human αM integrin antibody demonstrates significant reduction in adhesion and transmigration in this model system (Video 2), providing evidence for the role of αM integrin signaling in pathogenic mononuclear cell trafficking at the blood-nerve barrier in vitro, with therapeutic implications for GBS.
DOI: 10.6084/m9.figshare.c.3596135_d11.v1
title: Additional file 14: Table S7. of Comparison of the miRNA profiles in HPV-positive and HPV-negative tonsillar tumors and a model system of human keratinocyte clones

description: Rotated Component Matrix computed by Rotation Method: Varimax with Kaiser Normalization showing the components of a particular factor sorted by absolute value of loading for each variable. (XLS 146Â kb)
DOI: 10.6084/m9.figshare.c.3596180_d2.v1
title: Additional file 1: of Refined stratified-worm-burden models that incorporate specific biological features of human and snail hosts provide better estimates of Schistosoma diagnosis, transmission, and control

description: SWB codes15.nb [an example of the SWB model implemented using Mathematica v10.2 software (Wolfram Research, Champaign IL. USA)] (NB 35 kb)
DOI: 10.6084/m9.figshare.28044881
title: Comparative analysis between Olink-PEA and Alamar-NULISA proteomic technologies applied to a critically ill COVID-19 cohort

description: Data generated by the Olink and the Alamar affinity proteomics platforms to verify and validate low-abundant plasma proteins from severe COVID-19 cases and controls through a comparative analysis between Olink and Alamar performances. 83 severe COVID-19 cases and 44 controls were measured for proteomics using three Olink panels and one Alamar panel, which share 94 targets.
DOI: 10.6084/m9.figshare.c.3596135_d12.v1
title: Additional file 8: Table S6. of Comparison of the miRNA profiles in HPV-positive and HPV-negative tonsillar tumors and a model system of human keratinocyte clones

description: Significantly (Pâ
DOI: 10.6084/m9.figshare.c.3596180_d4.v1
title: Additional file 5: of Refined stratified-worm-burden models that incorporate specific biological features of human and snail hosts provide better estimates of Schistosoma diagnosis, transmission, and control

description: Infection data from Milalani village cross-sectional surveys (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3596438_d2.v1
title: Additional file 1: of Learning pathology using collaborative vs. individual annotation of whole slide images: a mixed methods trial

description: Junior student raw data. This spreadsheet contains all of the raw quiz score and qualitative data obtained from junior medical science students. This data underpins the findings in this report. (XLS 395 kb)
DOI: 10.6084/m9.figshare.c.3596444_d1.v1
title: Additional file 2: of Helping Babies Breathe (HBB) training: What happens to knowledge and skills over time?

description: Biweekly HBB monitoring report format for calls between central and site teams. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3596453_d1.v1
title: Additional file 1: Table S1. of Network analysis of microRNA and mRNA seasonal dynamics in a highly plastic sensorimotor neural circuit

description: Complete genomic sequences of miRs of interest from Gambelâ  s white-crowned sparrow. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.c.3596453_d2.v1
title: Additional file 4: of Network analysis of microRNA and mRNA seasonal dynamics in a highly plastic sensorimotor neural circuit

description: á  (XLSX 70Â kb)
DOI: 10.6084/m9.figshare.c.3596453_d4.v1
title: Additional file 5: Table S3. of Network analysis of microRNA and mRNA seasonal dynamics in a highly plastic sensorimotor neural circuit

description: Significantly differentially expressed miRNAs &gt;2 fold. (XLS 33Â kb)
DOI: 10.17863/cam.47262
title: Dataset for the paper "Pregnancy Serum DLK1 Concentrations associated with Fetal Genotype and Indices of Maternal Insulin Resistance and Secretion" [Dataset]

description: Dataset used for the unpublished paper "Pregnancy Serum DLK1 Concentrations associated with Fetal Genotype and Indices of Maternal Insulin Resistance and Secretion" and containing data from the Cambridge Baby Growth Study. Genotype data is not included for ethical and consensual reasons (apply to the investigators to request access if required). Uncompressed Microsoft 2013 (.xlsx) file (614 rows including header; 22 columns including one for a dummy identifier) containing data relevant to the publication collected as part of the Cambridge Baby Growth Study (data collection 2001-2019). All the study participants were recruited from pregnancy clinics at the Rosie Maternity Hospital, Cambridge (2001-2009) around week 15 of pregnancy. A research 75 g oral glucose tolerance test (after an overnight fast) was performed on participants around week 28 of pregnancy. DLK1 concentration measurements were made in fasting serum samples from this. Gestational diabetes was characterised according to International Association of Diabetes in Pregnancy Study Groups criteria. Insulin and c-peptide concentrations were measured using enzyme-linked immunosorbent assays and glucose by a standard laboratory technique. DLK1 was measured using an in-house Meso Scale Discovery assay. HOMA modelling was performed using the online HOMA calculator (https://www.dtu.ox.ac.uk/homacalculator/). Missing data are presented by empty cells. For further information about the study please contact Dr. Clive Petry (address below; email: cjp1002@cam.ac.uk). For further general information about the Cambridge Baby Growth Study please contact Dr. Clive Petry (Department of Paediatrics, Box 116, Addenbrooke's Hospital, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0QQ, U.K.; email: cjp1002@cam.ac.uk).
DOI: 10.6084/m9.figshare.28045091
title: Positive association of Triglyceride glucose index and gestational diabetes mellitus: a retrospective cohort study

description: Positive association of Triglyceride glucose index and gestational diabetes mellitus: a retrospective cohort study
DOI: 10.17863/cam.9161
title: Research data supporting "Modelling the influence of sensory dynamics on linear and nonlinear driver steering control"

description: This data contains Matlab functions which implement a new model of driver steering control described in the corresponding paper. It also includes the results of simulations described in the paper to compare the performance of different controllers and state estimators for modelling nonlinear steering control.
DOI: 10.6084/m9.figshare.c.3596639_d14.v1
title: Additional file 12: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

description: Table S7. Gene IDs, peptide spectral counts and protein descriptions for all 4162 D. immitis proteins detected by mass spectrometry in D. immitis tissues. (XLSX 851 kb)
DOI: 10.6084/m9.figshare.c.3596636_d14.v1
title: Additional file 10: of Leaf transcriptome of two highly divergent genotypes of Urochloa humidicola (Poaceae), a tropical polyploid forage grass adapted to acidic soils and temporary flooding areas

description: Comparison of the SSRs from U. humidicola, Panicum maximum and Brachiaria ruziziensis. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3596639_d15.v1
title: Additional file 2: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

description: Dataset S1. Transcript FPKM values for Dirofilaria immitis tissue transcriptome. (XLSX 369 kb)
DOI: 10.17863/cam.66112
title: Gaussian Approximation Potential for Hexagonal Boron Nitride (hBN-GAP)

description: This dataset contains the Gaussian Approximation Potential (GAP), a potential to describe the interatomic interactions in crystalline hexagonal boron nitride (hBN). Moreover, training and validation data obtained from DFT calculations are available too. The directory Potential contains the XML files for the hBN-GAP machine learning model. The file r6_innercut_hBN.xml contains the potential parameter for the semi-analytical 2b potential. The selected training and validation configurations are available in xyz format and named hBN_GAP_Training.xyz and hBN_GAP_Validation.xyz, respectively. An example job for running a hBN-GAP simulation in LAMMPS can be found in the directory Example_LAMMPS_job.
DOI: 10.6084/m9.figshare.c.3596636_d16.v1
title: Additional file 9: of Leaf transcriptome of two highly divergent genotypes of Urochloa humidicola (Poaceae), a tropical polyploid forage grass adapted to acidic soils and temporary flooding areas

description: List of genes composing the cellulose and lignin pathways among the U. humidicola unigenes. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3596639_d16.v1
title: Additional file 3: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

description: Table S1. List of over-represented GO terms and their associated p-values for tissue-associated D. immitis genes detected by either transcriptomics (red) or proteomics (blue). (XLSX 984 kb)
DOI: 10.6084/m9.figshare.c.3596636_d17.v1
title: Additional file 17: of Leaf transcriptome of two highly divergent genotypes of Urochloa humidicola (Poaceae), a tropical polyploid forage grass adapted to acidic soils and temporary flooding areas

description: Amplification success of the 31 primer pairs for the qPCR assays for both DNA and RNA of genotypes BRS-Tupi and BH031. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3596636_d18.v1
title: Additional file 8: of Leaf transcriptome of two highly divergent genotypes of Urochloa humidicola (Poaceae), a tropical polyploid forage grass adapted to acidic soils and temporary flooding areas

description: List of genes composing the C4 photosynthetic pathway among the U. humidicola unigenes. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3596681_d1.v1
title: Additional file 3: of Parallel or convergent evolution in human population genomic data revealed by genotype networks

description: This ZIP file contains the following documents. 1. genes_with_excess_of_cycles_exonLength_nucleotideMutations.txt: List of genes with excess of cycles when randomized networks are constructed from entire gene coding sequences (all four nucleotide mutations allowed). 2. gprofiler_results_100fragmentedGenes_largerthan10.xlsx: Gene ontology enrichment analysis results for the 100 most fragmented genes with a network comprising more than 10 sequences. 3. gprofiler_results_GO_function_process.xlsx: Gene ontology enrichment analysis of molecular functions and biological processes for the 42 genes with an excess of cycles. 4. gprofiler_results_GO_function_process_NoHLAGenes.xlsx: Gene ontology enrichment analysis of molecular functions and biological processes for the 42 genes with an excess of cycles, excluding the HLA genes. 5. gprofiler_results_KEGG.xlsx: KEGG pathways enrichment analysis for the 42 genes with an excess of cycles. 6. gprofiler_results_reactome.xlsx: Reactome pathways enrichment analysis for the 42 genes with an excess of cycles. 7. list_of_most_fragmented_networks.txt: List of 100 most fragmented networks among all haplotype networks comprising more than 10 nodes. Fragmentation is computed as the number of components divided by the size of the network (higher values correspond to greater fragmentation). (ZIP 63 kb)
DOI: 10.6084/m9.figshare.c.3596684_d1.v1
title: Additional file 1: of BCL9L expression in pancreatic neoplasia with a focus on SPN: a possible explanation for the enigma of the benign neoplasia

description: Mean RNA expression Ratio derived from two independent experiments, normalized against GAPDH. (XLSX 12 kb)
DOI: 10.17863/cam.32920
title: Data for the calculation of Energy recovery potential from stormwater runoff

description: The datasets and analysis that was used for the two case study examples presented the publication
DOI: 10.25574/62695
title: Chandra X-ray Observatory ObsId 62695
DOI: 10.6084/m9.figshare.c.3596696_d1.v1
title: Additional file 1: Table S1. of Characterization of mycobacteria and mycobacteriophages isolated from compost at the São Paulo Zoo Park Foundation in Brazil and creation of the new mycobacteriophage Cluster U

description: Similarity of sequenced phages with phages deposited in the GenBank. The phage genomes sequences were compared with sequences deposited in the GenBank using the Basic Local Alignment Search Tool (BLAST: http://blast.ncbi.nlm.nih.gov/Blast.cgi ). (XLSX 49 kb)
DOI: 10.17863/cam.22973
title: Raw data supporting Article: Aerobic conditions enhance the photocatalytic stability of CdS/CdOx quantum dots

description: Raw Data, supporting publication:Aerobic conditions enhance the photocatalytic stability of CdS/CdOx quantum dots
DOI: 10.6084/m9.figshare.c.3596864_d7.v1
title: Additional file 7: Table S7. of Genomic and transcriptomic comparison of nucleotide variations for insights into bruchid resistance of mungbean (Vigna radiata [L.] R. Wilczek)

description: SCPs involved in metabolic pathways. (XLS 35Â kb)
DOI: 10.6084/m9.figshare.c.3596906_d4.v1
title: Additional file 1: of On Predicting lung cancer subtypes using ‘omic’ data from tumor and tumor-adjacent histologically-normal tissue

description: Formatted TCGA dataset used in this study, along with sample IDs for classification task TAHNADC vs.TumorADC in gene expression. (CSV 5182 kb)
DOI: 10.6084/m9.figshare.c.3596864_d8.v1
title: Additional file 5: Table S5. of Genomic and transcriptomic comparison of nucleotide variations for insights into bruchid resistance of mungbean (Vigna radiata [L.] R. Wilczek)

description: Transcriptome-based NVs on exons of genes between bruchid-susceptible mungbean NM92 and bruchid-resistant mungbean TC1966 and RIL59. (XLS 57Â kb)
DOI: 10.17863/cam.106770
title: Supporting data for "Metallic local-moment magnetocalorics, a new route to cryogenic refrigeration"

description: Data underlying the figures shown in the publication 'Metallic local-moment magnetocalorics, a new route to cryogenic refrigeration'. Abstract: Commercial adiabatic demagnetisation refrigerators still employ the same hydrated salts that were first introduced over 85 years ago. The inherent limitations of these insulating magne- tocalorics – poor thermal conductivity at sub-Kelvin temperatures, low entropy density, corrosive- ness – can be overcome by a new generation of rare-earth based metallic magnetocalorics. Here, we present the metallic magnetocaloric YbNi1.6Sn as an attractive alternative to conventional re- frigerants. YbNi1.6Sn retains high entropy into the 100mK regime and avoids the noble metal constituents of alternative refrigerants. Demagnetisation tests demonstrate that YbNi1.6Sn enables economical and durable alternatives to traditional cooling devices for temperatures reaching below 120mK. We find that the magnetocaloric properties of this material are facilitated by unusually small Kondo and RKKY interactions, which position YbNi1.6Sn in the extreme local moment limit on the generalised Kondo lattice phase diagram.
DOI: 10.6084/m9.figshare.c.3596894_d7.v1
title: Additional file 7: Table S2. of Divergent evolutionary and epidemiological dynamics of cassava mosaic geminiviruses in Madagascar

description: List of the sequences used in the analyses. (XLSX 67 kb)
DOI: 10.6084/m9.figshare.c.3596927_d2.v1
title: Additional file 1: of xHMMER3x2: Utilizing HMMER3â  s speed and HMMER2â  s sensitivity and specificity in the glocal alignment mode for improved large-scale protein domain annotation

description: List of top 1500/1000/500 better HMMER2 Pfam29 domain models. (TXT 76 kb)
DOI: 10.6084/m9.figshare.c.3596930_d2.v1
title: Additional file 1: of Identification of microRNA profile specific to cancer stem-like cells directly isolated from human larynx cancer specimens

description: Data Set Entire set of top differentially expressed miRNAs is given in Additional Data Set. For each miRNA probe, fold change and p value information is provided. (XLSX 30Â kb)
DOI: 10.5255/ukda-sn-857557
title: Can Rail Reduce British Aviation Emissions: Airport-to-Airport Origin-Destination Data, 1990-2021

description: The data collection contains airport-airport origin-destination data for UK domestic and international flights between 1990 and 2021. The data includes estimates of the number of flights, passengers, and emissions in the form of tables and GIS-compatible formats. The data was derived from airport statistics and can be used to understand temporal-spatial trends in aviation demand and emissions.

Data contains three files:
airports - a shape file with the point locations of the airport used in the analysis
OD_lines - a shape file with the origin-destination lines between airports (great circle distance)
OD_attributes - a CSV file with columns for passengers, flights, and emissions for each year between 1990 and 2021. The attributes can be joined to the shape file via a shared id value.
DOI: 10.6084/m9.figshare.c.3596927_d3.v1
title: Additional file 2: of xHMMER3x2: Utilizing HMMER3â  s speed and HMMER2â  s sensitivity and specificity in the glocal alignment mode for improved large-scale protein domain annotation

description: List of original vs re-computed Pfam domain annotations for the human UniProt/SwissProt sequences. (TXT 12216 kb)
DOI: 10.6084/m9.figshare.c.3596936_d1.v1
title: Additional file 11: of Transcriptomic comparison between two Vitis vinifera L. varieties (Trincadeira and Touriga Nacional) in abiotic stress conditions

description: Primers used for amplification of up- and down- regulated genes by RT-qPCR. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3596942_d1.v1
title: Additional file 1: of Optimized pipeline of MuTect and GATK tools to improve the detection of somatic single nucleotide polymorphisms in whole-exome sequencing data

description: Supplementary information. A.xls file including supplementary tables. (XLS 25 kb)
DOI: 10.17863/cam.25797
title: Research data supporting "Dextran diffusivity values in freeze-dried collagen scaffolds" (Version 1)

description: Numerical values of diffusivity of dextran in freeze-dried collagen scaffolds, as measured by FRAP and standard Fickian theory. An example set of time-lapse images of diffusion into a scaffold is also given. Please note that this is a outdated version of this dataset. The most recent version can be accessed via $$\href{https://doi.org/10.17863/CAM.26221}{\text{https://doi.org/10.17863/CAM.26221}}$$
DOI: 10.6084/m9.figshare.c.3597146_d8.v1
title: Additional file 9: of Transcriptome sequencing of Mycosphaerella fijiensis during association with Musa acuminata reveals candidate pathogenicity genes

description: Table S6. Short, cysteine-rich, secreted proteins differentially expressed in infected leaf tissue versus mycelium grown in medium. SignalP 4.1 was used to predict proteins that are secreted from the cell. Proteins predicted to be short (&lt;300 amino acid residues for the mature sequence), cysteine-rich (&gt;4 cysteines), secreted, and for which the corresponding transcript is differentially expressed are shown in the table. For each protein sequence, the table indicates JGI protein and gene IDs, the location of the gene within the genome (including scaffold number, start and stop positions), the log2 fold change, the adjusted p-value for differential expression of the corresponding transcript, the length of the mature protein in amino acid residues, the number of cysteines in the mature sequence, and blastp results from a search against the NCBI non-redundant protein sequence database. Blastp results include the species where the closest homolog for the sequence was found, the description of the homolog, its NCBI accession number, the bitscore, the E-value, percent identity and similarity, notes on other species where homologs were found, and any conserved domains identified using the Conserved Domain Database. Protein sequences for which the corresponding transcripts have higher expression in infected leaf tissue are colored green, and those with higher expression in medium are colored blue. (XLS 64Â kb)
DOI: 10.6084/m9.figshare.c.3597158_d5.v1
title: Additional file 1: Table S4. of Classification of polyhedral shapes from individual anisotropically resolved cryo-electron tomography reconstructions

description: (in separate Excel spreadsheet due to size): List of estimated polyhedral graphs for 30 micro-compartments of E. coli, as represented by their topological profiles. (XLSX 33Â kb)
DOI: 10.17863/cam.106992
title: Research Data supporting REPORT ON THE EXCAVATIONS AT ALDBOROUGH (ISURIUM BRIGANTUM), 2018: BUILDING 2.17 – A ROMAN WAREHOUSE

description: Research data associated with excavations carried out to investigate a large building in the north-east of Isurium Brigantum. The structure was first excavated in 1924 during investigations of the defences, but the full extent of the building was revealed in the geophysical survey. The re-excavation of the 1924 trench set out to investigate the chronology and use of the building and its immediate context. The building is thought to be a warehouse (horreum) constructed around AD250-270. Its destruction came in the mid-fourth century or later. This huge warehouse sheds new light on the role of Isurium Brigantum as a centre for trade, taxation, and storage. See 'Aldborough 2018 ARCHIVE.xlxs' for detailed descriptions of the data.
DOI: 10.15468/dl.rmgedu
title: Occurrence Download

description: A dataset containing 117335 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is one of (CHN.13_1, CHN.14_1, CHN.16_1)",
 "IucnRedListCategory is one of (EW, CR, EN, VU, NT, LC)",
 "PublishingCountry is China"
 ]
}

 The dataset includes 117335 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037639-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3597146_d12.v1
title: Additional file 11: of Transcriptome sequencing of Mycosphaerella fijiensis during association with Musa acuminata reveals candidate pathogenicity genes

description: Table S8. Fusicoccadiene synthase homologs used for generation of phylogenetic tree. The table includes the M. fijiensis fusicoccadiene synthase and its top homologs as identified by blastp, which were used to generate a phylogenetic tree in Additional file 12: Figure S4. For each sequence, the species where it is found, its description, the bitscore, the E-value, the NCBI accession number, and percent identity with the M. fijiensis sequence are indicated. (XLS 66Â kb)
DOI: 10.48597/2p6x-frs4
title: Measurement of Ammonia at Lo (Bertonico)

description: Measurement of Ammonia at Lo (Bertonico)
DOI: 10.48597/4hrh-32xn
title: Measurement of Ammonia at Niort (Venise verte)

description: Measurement of Ammonia at Niort (Venise verte)
DOI: 10.6084/m9.figshare.c.3597371_d1.v1
title: Additional file 1: of Population-based survey of overweight and obesity and the associated factors in peri-urban and rural Eastern Uganda

description: Distribution of body mass index by age, sex and sexes combined. Description of data: The table provides details on the distribution of different groups of body mass index stratified by sex and age groups. (XLSX 11 kb)