cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.n5tb2rbs2
title: Food quality of Ephestia eggs, the aphid Rhopalosiphum padi and mixed diet for Orius majusculus

description: We studied the food quality of the aphid Rhopalosiphum padi to the pirate
 bug Orius majusculus using Ephestia eggs as high‐quality comparison prey.
 Several performance parameters were tested on individuals that had been
 reared and maintained on each of the two single‐prey diets or on a mixed
 diet. All fitness parameters were lower in individuals fed aphids only,
 indicating poor food quality of this prey. Compared with the pure Ephestia
 egg diet, the mixed diet enhanced teneral mass, while adult survival and
 female starvation tolerance were negatively affected and all other traits
 were unaffected. Body protein proportions were constant across diets,
 whereas lipid proportion was low in the aphid treatment. Preference for
 aphids was lower following a monotypic aphid diet than when reared on
 Ephestia eggs or a mixed diet. The results confirm that R. padi is
 low‐quality food for O. majusculus as it is for other generalist
 predators, even though O. majusculus may contribute significantly to
 population suppression of the aphid.
description: Laboratory experiments.
DOI: 10.6078/d1nx1v
title: An electrophysiological marker of arousal level in humans

description: Deep non-rapid eye movement sleep (NREM) and general anesthesia with
 propofol are prominent states of reduced arousal linked to the occurrence
 of synchronized oscillations in the electroencephalogram (EEG). Although
 rapid eye movement (REM) sleep is also associated with diminished arousal
 levels, it is characterized by a desynchronized, 'wake-like'
 EEG. This observation implies that reduced arousal states are not
 necessarily only defined by synchronous oscillatory activity. Using
 intracranial and surface EEG recordings in four independent data sets, we
 demonstrate that the 1/f spectral slope of the electrophysiological power
 spectrum, which reflects the non-oscillatory, scale-free component of
 neural activity, delineates wakefulness from propofol anesthesia, NREM and
 REM sleep. Critically, the spectral slope discriminates wakefulness from
 REM sleep solely based on the neurophysiological brain state. Taken
 together, our findings describe a common electrophysiological marker that
 tracks states of reduced arousal, including different sleep stages as well
 as anesthesia in humans.
DOI: 10.6084/m9.figshare.31164331
title: Métricas Redes

description: Contexto: A convergência entre ecossistemas da Internet das Coisas (IoT) e jogos digitais possibilita experiências interativas únicas. Contudo, a integração em tempo real entre os estados do jogo e automação residencial permanece inexplorada. Objetivos: Este estudo objetiva propor e validar um modelo aplicável que integre YOLO e Home Assistant com jogos digitais, incrementando a experiência do jogador mediante feedback em sua residência vinculado a eventos no jogo. Metodologia: Adotou-se o método de estudo de caso utilizando Genshin Impact como unidade-caso. O processo envolveu: (1) configuração do Home Assistant; (2) coleta e anotação de 1.313 capturas de tela do jogo para detecção de ícones; (3) treinamento do modelo YOLOv12n; (4) implementação da máquina de estados para mapeamento elemento-cor; e (5) avaliação das métricas de Qualidade de Experiência (QoE): latência do serviço, precisão visual e taxas de detecção falsa. Resultados: Os resultados indicam uma latência média do sistema de 566 ms, precisão visual de 82,8\% para correspondências cor-correta/estado, e taxas de falso positivo/falso negativo de 18,35\% e 1,85\%, respectivamente.
DOI: 10.6084/m9.figshare.31164331.v1
title: Métricas Redes

description: Contexto: A convergência entre ecossistemas da Internet das Coisas (IoT) e jogos digitais possibilita experiências interativas únicas. Contudo, a integração em tempo real entre os estados do jogo e automação residencial permanece inexplorada. Objetivos: Este estudo objetiva propor e validar um modelo aplicável que integre YOLO e Home Assistant com jogos digitais, incrementando a experiência do jogador mediante feedback em sua residência vinculado a eventos no jogo. Metodologia: Adotou-se o método de estudo de caso utilizando Genshin Impact como unidade-caso. O processo envolveu: (1) configuração do Home Assistant; (2) coleta e anotação de 1.313 capturas de tela do jogo para detecção de ícones; (3) treinamento do modelo YOLOv12n; (4) implementação da máquina de estados para mapeamento elemento-cor; e (5) avaliação das métricas de Qualidade de Experiência (QoE): latência do serviço, precisão visual e taxas de detecção falsa. Resultados: Os resultados indicam uma latência média do sistema de 566 ms, precisão visual de 82,8\% para correspondências cor-correta/estado, e taxas de falso positivo/falso negativo de 18,35\% e 1,85\%, respectivamente.
DOI: 10.5061/dryad.2jm63xskb
title: Ventral motion parallax enhances fruit fly steering to visual sideslip

description: Flies and other insects use incoherent motion (parallax) to the front and
 sides to measure distances and identify obstacles during translation.
 Although additional depth information could be drawn from below, there is
 no experimental proof that they use it. The finding that blowflies encode
 motion disparities in their ventral visual fields suggests this may be an
 important region for depth information. We used a virtual flight arena to
 measure fruit fly responses to optic flow. The stimuli appeared below
 (n=51) or above the fly (n=44), at different speeds, with or without
 motion parallax cues. Dorsal parallax does not affect responses, and
 similar motion disparities in rotation have no effect anywhere in the
 visual field. But responses to strong ventral sideslip (206 deg/s) change
 drastically depending on the presence or absence of parallax. Ventral
 parallax could help resolve ambiguities in cluttered motion fields, and
 enhance corrective responses to nearby objects.
description: We recorded the steering responses of <em>Drosophila
 melanogaster</em> when presented with ventral and dorsal visual
 stimuli in a rigid tether virtual arena. Tethered flies were illuminated
 from above with an infrared light, while photodiodes below measured the
 shadow produced by each wing beat. Since flies steer by changing the
 relative amplitudes of left and right wing beats, attempts to turn produce
 a differential voltage by the sensor pair, and is reported as the voltage
 difference in wing beat amplitude, ΔWBA. This information is saved in
 a binary file per experiment and per fly. The data stored here has not
 been processed. We provide a Python code that can be used to read it,
 analyze it and reproduce the figures we present in our paper.
description: The files are compressed as a RAR file. Once unpacked they
 provide the file structure required by the script to read them. Feel free
 to contact C. Ruiz if you have any questions regarding the
 dataset. Detailed instructions The
 analysis is written as a Python script that can be called from the command
 line or imported on an interpreter such as Spyder. It is necessary to have
 Python installed already in the system. Follow these instructions in order
 to generate the plots and examine the data: Unpack the
 compressed ZIP file preserving the folder structure.
 Open a terminal window or an interpreter such as Spyder and run
 the code<br> The code will load the binary files, process the data
 and generate the plots presented in the manuscript for
 publication.<br> It will also show some lines of text at the end
 offering the results of the T-tests ran on the data.
DOI: 10.5061/dryad.j3tx95x92
title: Antibiotic interactions shape short-term evolution of resistance in Enterococcus faecalis

description: Antibiotic combinations are increasingly used to combat bacterial
 infections. Multidrug therapies are a particularly important treatment
 option for E. faecalis, an opportunistic pathogen that contributes to
 high-inoculum infections such as infective endocarditis. While numerous
 synergistic drug combinations for E. faecalis have been identified, much
 less is known about how different combinations impact the rate of
 resistance evolution. In this work, we use high-throughput laboratory
 evolution experiments to quantify adaptation in growth rate and drug
 resistance of E. faecalis exposed to drug combinations exhibiting
 different classes of interactions, ranging from synergistic to
 suppressive. We identify a wide range of evolutionary behavior, including
 both increased and decreased rates of growth adaptation, depending on the
 specific interplay between drug interaction and drug resistance profiles.
 For example, selection in a dual \textbeta-lactam combination leads to
 accelerated growth adaptation compared to selection with the individual
 drugs, even though the resulting resistance profiles are nearly
 identical.  On the other hand, populations evolved in an
 aminoglycoside and \textbeta-lactam combination exhibit decreased growth
 adaptation and resistant profiles that depend on the specific drug
 concentrations. We show that the main qualitative features of these
 evolutionary trajectories can be explained by simple rescaling arguments
 that correspond to geometric transformations of the two-drug growth
 response surfaces measured in ancestral cells. The analysis also reveals
 multiple examples where resistance profiles selected by drug combinations
 are nearly growth-optimized along a contour connecting profiles selected
 by the component drugs. Our results highlight trade-offs between drug
 interactions and resistance profiles during the evolution of multi-drug
 resistance and emphasize evolutionary benefits and disadvantages of
 particular drug pairs targeting enterococci.
description: Data includes growth rate and drug IC<sub>50</sub>
 data from lab evolution experiments in multiple populations exposed to
 antibiotic combinations.
description: README file is included.
DOI: 10.15468/dl.bw2yuc
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Beauveria bassiana",
 "Year 2006-2026"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002183-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.xpnvx0kbq
title: Comparative phylogeography of West African amphibians and reptiles

description: Comparative phylogeographic studies often support shared divergence times
 for co-distributed species with similar life histories and habitat
 specializations. During the late Holocene, West Africa experienced
 aridification and the turnover of rain forest habitats into savannas.
 These fragmented rain forests harbor impressive numbers of endemic and
 threatened species. In this setting, populations of co-distributed rain
 forest species are expected to have diverged simultaneously, whereas
 divergence events for species adapted to savanna and forest-edge habitats
 should be absent or idiosyncratic. We conducted a Bayesian analysis of
 shared evolutionary events to test models of population divergence for 20
 species of anurans (frogs) and squamates (lizards and snakes) that are
 distributed across the Dahomey Gap, a climate change induced savannah
 barrier responsible for fragmenting previously contiguous rain forests of
 Ghana into two regions: the Togo-Volta Hills and the Southwestern Forests.
 A model of asynchronous diversification is supported for anurans and
 squamates, suggesting that drivers of diversification are not specifically
 related to ecological and life history associations with habitat types.
 Instead, the wide variability of genetic divergence histories exhibited by
 these species suggests that biodiversity in this region has been shaped by
 diversification events that extend beyond the Holocene. Comparisons of the
 genealogical divergence index (gdi), a measure of the genetic divergence
 between populations due to the combined effects of genetic isolation and
 gene flow, illustrate that these populations represent a broad sampling of
 the speciation continuum.
DOI: 10.15468/dl.pzrd76
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia pycnantha",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002184-260126135527185/datasets/export for details.
DOI: 10.5061/dryad.ns1rn8pp6
title: Speedy revelations: how alarm calls can convey rapid, reliable information about urgent danger

description: In the perpetual struggle between high-speed predators and their prey,
 individuals need to react in the blink of an eye to avoid capture. Alarm
 calls that warn of danger therefore need to do so sufficiently rapidly
 that listeners can escape in time. Paradoxically, many species produce
 more elements in their alarm calls when signalling about more immediate
 danger, thereby increasing the reliability of transmission of critical
 information but taking longer to convey the urgent message. We found that
 New Holland honeyeaters, Phylidonyris novaehollandiae, incorporated more
 elements in alarm calls given to more dangerous predators, but video
 analysis revealed that listeners responded in 100 ms, after only the first
 element. Consistent with this rapid response, the acoustic structure of
 the first element varied according to the danger, and playbacks confirmed
 that birds need only hear the first element to assess risk. However, birds
 hid for longer, and were more likely to flee, after calls with more
 elements. The dual mechanisms of varying both element structure and number
 may provide a widespread solution to signalling rapidly and reliably about
 immediate danger.
DOI: 10.5061/dryad.5hqbzkh2r
title: Data from: Out of sight, out of mind: Widespread nuclear and plastid-nuclear discordance in the flowering plant genus Polemonium (Polemoniaceae) suggests widespread historical gene flow despite limited nuclear signal

description: Phylogenomic data from a rapidly increasing number of studies provide new
 evidence for resolving relationships in recently radiated clades, but they
 also pose new challenges for inferring evolutionary histories. Most
 existing methods for reconstructing phylogenetic hypotheses rely solely on
 algorithms that only consider incomplete lineage sorting as a cause of
 intra- or inter-genomic discordance. Here, we utilize a variety of
 methods, including those to infer phylogenetic networks, to account for
 both incomplete lineage sorting and introgression as a case for nuclear
 and cytoplasmic-nuclear discordance using phylogenomic data from the
 recently radiated flowering plant genus Polemonium (Polemoniaceae), an
 ecologically diverse genus in Western North America with known and
 suspected gene flow between species. We find evidence for widespread
 discordance among nuclear loci that can be explained by both incomplete
 lineage sorting and reticulate evolution in the evolutionary history of
 Polemonium. Furthermore, the histories of organellar genomes show strong
 discordance with the inferred species tree from the nuclear genome.
 Discordance between the nuclear and plastid genome is not completely
 explained by incomplete lineage sorting, and only one case of discordance
 is explained by detected introgression events. Our results suggest that
 multiple processes have been involved in the evolutionary history of
 Polemonium and that results from the plastid genome do not accurately
 reflect species relationships. We discuss several potential causes for
 this cytoplasmic-nuclear discordance, which emerging evidence suggests is
 more widespread across the Tree of Life than previously thought.
DOI: 10.5061/dryad.1rn8pk0q3
title: Photosynthetic heat tolerances and extreme leaf temperatures

description: Photosynthetic heat tolerances (PHTs) have several potential applications
 including predicting which species will be most vulnerable to climate
 change. Given that plants exhibit unique thermoregulatory traits that
 influence leaf temperatures and decouple them from ambient air
 temperatures, we hypothesized that PHTs should be correlated with extreme
 leaf temperatures as opposed to air temperatures. We
 measured leaf thermoregulatory traits, maximum leaf
 temperatures (TMO) and two metrics of
 PHTs (Tcrit and T50) quantified using the
 quantum yfield of photosystem II for 19 plant species growing in
 Fairchild Tropical Botanic Garden (Coral Gables, FL, USA).
 Thermoregulatory traits measured at the Garden and microenvironmental
 variables were used to parameterize a leaf energy balance model that
 estimated maximum in situ leaf temperatures (TMIS)
 across the geographic distributions of 13 species.
 T MO and TMIS were positively
 correlated with T50 but were not correlated
 with Tcrit. The breadth of species' thermal safety margins
 (the difference between T50 and TMO) was
 negatively correlated with T50. Our results provide observational
 and theoretical support based on a first principles approach for the
 hypothesis that PHTs may be adaptations to extreme leaf temperature, but
 refute the assumption that species with higher PHTs are less susceptible
 to thermal damage. Our study also introduces a novel method for studying
 plant ecophysiology by incorporating biophysical and species distribution
 models, and highlights how the use of air temperature versus leaf
 temperature can lead to conflicting conclusions about species
 vulnerability to thermal damage.
DOI: 10.15139/s3/6usuvq
title: Data Management and Sharing Plan for: Ring-Opening Metathesis Polymerization of Carbodiimides: Sustainable Catalysis and Extensions to Diazene Metathesis

description: The Data Management and Sharing Plan describes the scientific data to be generated and/or used in the research and outlines a strategy for managing and sharing project data.
description: Data Management and Sharing Plan
DOI: 10.5061/dryad.4b8gtht8g
title: Intrapopulation Variation in the Behavioural Responses of Dwarf Mongooses to Anthropogenic Noise

description: Anthropogenic noise is an increasingly widespread pollutant, with a
 rapidly burgeoning literature demonstrating impacts on humans and other
 animals. However, most studies have simply considered if there is an
 effect of noise, examining the overall cohort response. Whilst substantial
 evidence exists for intraspecific variation in responses to other
 anthropogenic disturbances, this possibility has received relatively
 little experimental attention with respect to noise. Here, we used
 field-based playbacks with dwarf mongooses (Helogale parvula) to test how
 traffic noise affects vigilance behaviour, and to examine potential
 variation between individuals of different age class, sex and dominance
 status. Foragers exhibited a stronger immediate reaction and increased
 their subsequent vigilance (both that on the ground and as a sentinel) in
 response to traffic-noise playback compared to ambient-sound playback.
 Traffic-noise playback also resulted in sentinels conducting longer bouts
 and being more likely to change post height or location than in
 ambient-sound playback. Moreover, there was evidence of variation in noise
 responses with respect to age class and dominance status, but not sex. In
 traffic noise, foraging pups were more likely to flee and were slower to
 resume foraging than adults; they also tended to increase their vigilance
 more than adults. Dominants were more likely than subordinates to move
 post during sentinel bouts conducted in traffic-noise trials. Our findings
 suggest that the vigilance–foraging trade-off is affected by traffic
 noise, but that individuals differ in how they respond. Future work should
 therefore consider intrapopulation response variation to understand fully
 the population-wide effects of this global pollutant.
description: Fieldwork on a habituated population of dwarf
 mongooses. Short-term experimental
 manipulations.  A variety of statistical analyses were
 carried out using R.
DOI: 10.5061/dryad.kwh70rz0n
title: Data from: On the use of random graphs in analysing resource utilization in urban systems

description: Urban resource models increasingly rely on implicit network formulations.
 Resource consumption behaviours documented in the existing empirical
 studies are ultimately by-products of the network abstractions underlying
 these models. Here we present an analytical formulation and examination of
 a generic demand-driven network model that accounts for the effectiveness
 of resource utilisation and its implications for policy levers in
 addressing resource management in cities. We establish simple limiting
 boundaries to systems' resource effectiveness. These limits are found
 not to be a function of system size and to be simply determined by the
 system's average ability to maintain resource quality through its
 transformation processes. We also show that resource utilisation in itself
 does not enjoy considerable size efficiencies with larger and more diverse
 systems only offering increased chances of finding matching demand and
 supply between existing sectors in the system.
description: Data from Monte Carlo simulations. Source code for regenarating
 the dataset can be found on https://github.com/cip15ha/randomgraph-resource-utilisation
description: Dataset is provided as a hdf5 encoded table. Jupyter notebooks
 for processing of the dataset can be found on https://github.com/cip15ha/randomgraph-resource-utilisation
DOI: 10.15468/dl.yyw355
title: Occurrence Download

description: A dataset containing 296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (c2ecae57-6701-485e-9ebd-5f87b2945cb2, f9b67ad0-9c9b-11d9-b9db-b8a03c50a862, 6ea87510-0561-11d8-b851-b8a03c50a862)",
 "TaxonKey is Melanoplus decoratus",
 "Year 1900-2026"
 ]
}

 The dataset includes 296 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002186-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.