cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/0vb-f6j-sqc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2gl-ffb-9p1
title: †Pilina Koken, 1925

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14157521.v1
title: Myomectomy_mortality

description: Women who underwent myomectomy in South Korea (2009-2018)
DOI: 10.6084/m9.figshare.4244171.v1
title: EEG Data New

description: 'H' stands for Healthy Controls'MDD' stands for Major Depressive Disorder 'EC' stands for eyes closed'EO' stands for eyes open'TASK' stands for P300 data
DOI: 10.3535/chs-28e-qcv
title: Specklinia Lindl.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t4b-4n6-ky0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1298135.v1
title: Isoprenoid Synthesis in Dinoflagellates

description: More to come later...
DOI: 10.17632/8h95zvcsjm
title: LINF_050010700

description: hypothetical protein - conserved; Leishmania infantum
DOI: 10.3535/dpe-3z5-cem
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tvk-55f-pvs
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.17128943.v2
title: DInSAR_Carboni et al. 2021

description: We here include the surface coseismic ruptures interpreted from the VDM in kmz, the DInSAR slope analysis performed in QGis as a GeoTiff (WGS84-UTM33N, EPSG:32633) and the ASCII file of the VDM 1 and HDM1.<br>
DOI: 10.6084/m9.figshare.19130075.v1
title: TIDieR-Checklist

description: TIDieR checklist
DOI: 10.17632/jb3zphnm4k
title: PMACS-76 Flow Data

description: Flow data for PMACS-76. All other info on figshare (see link below).
DOI: 10.17632/v7kjkpvkc2
title: Dataset of Potential remineralization of terrestrial organic matter in the sediments of the New Britain Trench revealed by optical and molecular properties of the water-extracted dissolved organic matter

description: The dataset contains geochemical, flourscent, and FT-ICRMS data used in the paper "Potential remineralization of terrestrial organic matter in the sediments of the New Britain Trench revealed by optical and molecular properties of the water-extracted dissolved organic matter ".
DOI: 10.3535/f0z-baq-y5k
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/g97-ayl-d9l
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1375752.v1
title: Sex Trafficking

description: sex trafficking
DOI: 10.6084/m9.figshare.22144427.v1
title: Track hub for the manuscript titled "Stable bulged G-quadruplexes in the human genome: Identification, experimental validation and functionalization" (2022-2023)

description: Track hub containing the information for multiple computationally and experimentally defined datasets. Computational predictions were carried out by our lab. <br> Experimental data is also included from multiple external sources (G4-seq: https://doi.org/10.1038/nprot.2017.150; G4 CUT&Tag: doi:10.1101/gr.275431.121).
DOI: 10.6084/m9.figshare.26233442.v2
title: Draft genome of Phragmites australis, USland lineage scaffolded to chromosome level and its annotation

description: The draft genome of Phragmites australis representing the USland lineage (individual Y7) was first constructed with paired end short reads using Masurca software, and then scaffolded to chromosome level, by mapping against our chromosome level reference genome assembly using Ragtag. This file is the genome fasta file. The proportion of gaps were filled with Ns. The genome annotation was performed by lifting off from the genomic feature of the reference genome .
DOI: 10.6084/m9.figshare.28525292.v1
title: PMACS-109

description: <b>Project title</b>: PMACS-109<b>Grant Information:</b> AHA Grant 9TPA34910007, Regulatory role of pericardial macrophages in myocardial infarction<b>Relevant Citations:</b><b> </b><b>https://doi.org/10.1016/j.isci.2024.110244</b><b>Project Description:</b>· Animal Model: IL-33 induced pericarditis· Animal Age: 6-8 Weeks· Animal Sex:· Animal Strain: C57B6/J Lys<sup>Cre</sup> or C57B6 Lys<sup>Cre</sup>GATA6<sup>fl/fl</sup>· Number: 17 Mice· Groups:o 8 Lys<sup>Cre</sup>o 9 Lys<sup>Cre</sup>GATA6<sup>fl/fl</sup>o All received pericarditis injections· Experimental Conditions: All mice received IP injections of 1ug of IL-33 in 100uL of solution at day 0, 2, 4, 6 and 8. With each injection mice also received 100pmol/kg of IL-5. At day 10 mice were sacrificed. Pericardial and myocardial tissue was separated and tissues were analyzed separately via flow cytometry<b>Licenses: </b>N/A
DOI: 10.25377/sussex.12833408.v1
title: Interview with Anita, 16-17, South Asian, working class, Muslim. Women, Risk and AIDS Project, London, 1989. Anonymised version including field notes. (Ref: LSFS21)

description: This interview is part of the Women, Risk and Aids Project (1989-90) archive which was created as part of the Reanimating Data Project (2018-20).<br>Anonymised transcript of an interview with Anita. She is from a Muslim family, and though her parents are fairly liberal and westernised, they've been much stricter with her than with her older sister. Anita is allowed to date at the moment, but her partner would also have to be Muslim - she isn't too concerned about relationships right now. She has mixed feelings around having an arranged marriage in the future and wouldn't to do it for the sake of it. Anita is worried about sexual experiences before marriage, as there are particular customs in Muslim culture around virginity that she would need to adhere to. She has some interesting thoughts on the ways that pleasure, marriage and religion intersect, and the expectations that are placed on Muslim wives. Sex education at her secondary school wasn't taken too seriously by Anita, as she could never imagine being old enough to need that sort of information. She would have liked to have been taught about the emotional aspects of relationships too. Anita isn't sure what she would like to do in the future, but doesn't want marriage or children until much later on.
DOI: 10.3535/ex4-gwb-67b
title: Belonechitina cf. granosa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mw5-qkv-ccn
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26275993.v1
title: Quality Appraisal

description: This dataset shows the quality appraisal done to the articles included in the systematic literature review.
DOI: 10.3535/9xe-szl-3ke
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pzj-jdg-zms
title: Ancyrochitina cf. primitiva

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21829574.v1
title: The cyclic production routing problem

description: This paper introduces the Cyclic Production Routing Problem (CPRP). The CPRP is an extension of the well-known NP-hard Production Routing Problem (PRP), which is a hard-to-solve combinatorial optimisation problem with numerous practical applications in the field of freight transportation, logistics and supply chain management. Under the PRP setting, a manufacturer is responsible for determining production decisions, as well as the timing and quantity of replenishment services offered to a set of geographically dispersed customers over a multi-period time horizon. The problem calls for jointly optimising the production, inventory, distribution and routing decisions. In this paper, the basic PRP model is modified to generate repeatable cyclic production and delivery schedules. A two-commodity flow formulation is proposed along with valid inequalities. Extensive comparisons between the basic PRP and the proposed cyclic variant on well-known benchmark instances are provided. The new variant is significantly harder to solve, especially when the vehicle fleet is limited. From a managerial perspective, the generation of cyclic production-routing schedules significantly increases all costs, whereas the number of vehicle routes required to implement a cyclic schedule is higher.
DOI: 10.6084/m9.figshare.24543214.v1
title: Plot of Bathymetric Surfaces - Common Area

description: Image imprint of each bathymetric surface in Portable Network Graphics (.png) format.
DOI: 10.6084/m9.figshare.9276065.v1
title: Viral etiology of acute respiratory infections in children in Southern Iran

description: Abstract INTRODUCTION: Prevalence of influenza A virus (Flu-A), respiratory syncytial virus (RSV), and human metapneumovirus (hMPV) was assessed in children with acute respiratory infections (ARIs). METHODS: Nasopharyngeal aspirates and throat swabs were subjected to real-time polymerase chain reaction (PCR) to detect RSV and Flu-A and to conventional PCR to detect hMPV. RESULTS: Of the 156 children assessed, 93 (59.6%) carried at least one virus, with 35.9% positive for RSV, 14.1% for hMPV, and 9.6% for Flu-A. The prevalence of co-infections was 2.6%. CONCLUSIONS: The high detection rate may reflect increased sensitivity of real-time PCR compared to traditional PCR and viral culture.
DOI: 10.17632/65dvpkdrvs
title: AFMM: A molecular mechanics force field vibrational parametrization program

description: Abstract AFMM (Automated Frequency Matching Method) is a program package for molecular mechanics force field parametrization. The method used fits the molecular mechanics potential function to both vibrational frequencies and eigenvector projections derived from quantum chemical calculations. The program optimizes an initial parameter set (either pre-existing or using chemically-reasonable estimation) by iteratively changing them until the optimal fit with the reference set is obtained. By implementin... Title of program: AFMM Catalogue Id: ADUZ_v1_0 Nature of problem Molecular mechanics force field parametrization. Versions of this program held in the CPC repository in Mendeley Data ADUZ_v1_0; AFMM; 10.1016/j.cpc.2004.12.005 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/dmwtpd4982
title: Multiple plus-strand RNA viruses hijack Musashi homolog 1 to shield viral RNA from cytoplasmic ribonuclease degradation

description: The original data of the paper of multiple plus-strand RNA viruses hijack Musashi homolog 1 to shield viral RNA from cytoplasmic ribonuclease degradation.
DOI: 10.17632/y6spcn8jcs
title: A time-of-flight spectrum simulator for neutron elastic and inelastic scattering

description: Title of program: IMBUI-G, NEUTRON TOF SIMULATOR Catalogue Id: ABKJ_v1_0 Nature of problem Program IMBUI was written to assist in the design and the data analysis of high resolution neutron time-of-flight experiments using a subnanosecond, pulsed Van-de-Graaff accelerator. Several factors govern the resolution in these experiments; there are timing uncertainties, variations in neutron velocities, and uncertainties in flight path lengths. Through careful selection of experiment parameters it is possible to optimize resolution without sacrificing the detector counting rate. IMBUI assist ... Versions of this program held in the CPC repository in Mendeley Data ABKJ_v1_0; IMBUI-G, NEUTRON TOF SIMULATOR; 10.1016/0010-4655(81)90095-3 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.3535/2dm-pr1-x3d
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qg2-04a-a6p
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7571393.v1
title: Meaningful and reproducible statistics: Does my data hold what it promises?

description: 20 minute lightning talk presentation given by Andrej-Nikolai Spiess, from University Hospital Hamburg-Eppendorf, at the Better Science through Better Data 2018 event. The video recording, slides and scribe are included.
DOI: 10.3535/6j1-xzh-9tz
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j1c-erf-v6g
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24197586.v1
title: Research Protocl

description: This research protocol presents in-depth information of our mixed-method study entitled <b>Navigating Cultural Diversity: Barriers and Benefits in Multicultural Agile Software Development Teams</b>The study is submitted at the Lean and Agile Software Development Track at the ACM/SIGAPP Symposium on Applied Computing.For the review process the file is anonymized.
DOI: 10.6084/m9.figshare.26877514.v1
title: 无标题项目

description: 此数据集是模型的最小数据集
DOI: 10.6084/m9.figshare.26963308.v1
title: Humidity Testing

description: The sensor's results demonstrate its functionality over moisture measurement where capacitance changes from a minimum of 4.86 pF at 40% RH to a maximum of 4.25μF at 90% RH (Supplementary Figure 7a). A detailed desciption of the procedure of the humidity testing is provided in the Supplementary Figure 6.
DOI: 10.3535/qj2-213-3rf
title: Chalcedony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.17152691.v3
title: Data and code to replicate the analysis in "Resource pulses and human-wildlife conflicts: Linking satellite indicators and ground data on forest productivity to predict brown bear damages"

description: These datasets include processed data to run the analyses needed to (1) estimate the response of bear damage to year-to-year variation in beechnut production; (2) model and predict the variability in beechnut production as a response of weather cues of masting and remote-sensing indicators of vegetation growth and phenology. The raw data was compiled from the official databases of the organization responsible for damage compensation in the study area and from different online sources. Along with the data we provide METADATA files with the information about each variable present in each dataset. We also provided the analysis code (R script) used to generate statistics and some of the figures. For references and details about data processing, and analysis we refer to the original publication and its Supporting Information.
DOI: 10.6084/m9.figshare.21316299.v1
title: dataset_LCMSMS.xlsx

description: This file is including the results of <em>in vitro</em> phosphatidylglucoside (PtdGlc) biosynthesis assay. We incubated saturated phosphatidic acid (PA, 18:0/20:0) and UDP-glucose with buffer, flag-conjugated UGGT1 or flag-conjugated UGGT2. PtdGlc (18:0/20:0) formation was monitored by reversed phase LC-MS/MS in negative ion mode with multiple reaction monitoring utilising four precursor-product ion pairs simultaneously at the following settings: <em>m/z</em> 893.5→283.1 (CE: 66.0); <em>m/z</em> 893.5→311.2 (CE: 56.0); <em>m/z</em> 893.5→419.1 (CE: 37.0); and <em>m/z</em> 893.5→79.0 (CE: 97.0). We also incubated unstaurated PA (18:1/18:1) with buffer or flag-conjugated UGGT2. The unsaturated glucosylated-PA (18:1/18:1) was detected with multiple reaction monitoring utilising three precursor-product ion pairs simultaneously at the following settings: <em>m/z</em> 861.5→281.1 (CE: 66.0); <em>m/z</em> 861.5→417.1 (CE: 37.0); and <em>m/z</em> 861.5→79.0 (CE: 97.0). In addition, we performed PtdGlc biosynthesis assays with flag-conjugated UGGT2 in the presence of denatured Urea-denatured thyroglobulin and saturated PA (18:0/20:0).
DOI: 10.6084/m9.figshare.28623227.v1
title: Random Forest Model for SOS Prediction in the Northern Hemisphere

description: Random Forest model for spring onset prediction across the Northern Hemisphere
DOI: 10.6084/m9.figshare.3796434.v1
title: HGF Parameter Correlations

description: Estimated HGF model posteriors for 124 participants.<br>x.DrugID gives the row-wise drug identifier for each participant where:1 = Placebo2 = DA-3 = ACh-4 = NA-<br>x.MeanPosteriorCorrelations and x.BPACorrelations contain correlation matrices for the HGF parameters, where row/column:1 = mu3_02 = sa3_03 = omega4 = theta5 = beta06 = beta17 = beta28 = beta39 = beta410 = zeta<br>Note that Bayesian Parameter Averages (BPAs) are calculated using the function tapas_bayesian_parameter_average in the HGF toolbox (http://www.translationalneuromodeling.org/tapas/).<br>
DOI: 10.6084/m9.figshare.c.3784307_d7.v1
title: Additional file 7: of Candidate gene based association mapping in Fusarium culmorum for field quantitative pathogenicity and mycotoxin production in wheat

description: Characteristics of identified single nucleotide polymorphisms (SNPs) in the candidate genes and p values for association tests against mean aggressiveness and DON production. (LOG 402 bytes) (XLS 34Â kb)
DOI: 10.17632/rp9p3m2py9
title: Data for manuscript 'Gravitational water and natural enrichment of heavy metals in Holocene soils in the southern Chinese Loess Plateau'

description: Tables
DOI: 10.3535/5qw-y2k-cv8
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cnt-4rr-t3d
title: Arsenopyrite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21436176.v1
title: Endometriosis occupationnal

description: The objective of this study is to explore and describe the professional impact of deep infiltrating endometriosis on infertile women. We conducted a qualitative monocentric study between December 2020 and June 2021. Twelve semi-structured in-depth interviews using a theme-based interview guide with open questions were undertaken with infertile women with deep infiltrating endometriosis. Data analysis was conducted using an inductive approach according to the grounded theory method. Three main themes emerged from the interviews: (i) barriers to reconciling illness and work life, (ii) facilitating factors for well-being at work, and (iii) consequences and outlooks. It appeared that the time of infertility treatment represents a particular period of change in the working lives of women with endometriosis. For most women, these changes are experienced negatively, often with a renunciation of goals. For others, this is the time to communicate the difficulties linked to their illness to their professional entourage. There is a long path ahead to finally achieving recognition of endometriosis in the context of professional life.
DOI: 10.3535/85a-3vs-zep
title: Chalcedony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rld-hrx-62f
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13241972.v13
title: DEBBIES. A database to compare life history strategies across ectotherms.

description: Demographic models are used to explore how survival, growth and reproduction rates structure variation in life history traits (e.g., longevity, generation time, age at maturity) and strategies (pace of life and reproductive strategy) across species. This study presents the DEBBIES dataset that contains estimates of eight life history traits (length at birth, puberty and maximum length, maximum reproduction rate, fraction energy allocated to respiration versus reproduction, von Bertalanffy growth rate, juvenile and adult mortality rate) for 185 ectotherm species. The dataset can be used to parameterise dynamic energy budget integral projection models (DEB-IPMs) to calculate key demographic quantities like population growth rate and demographic resilience, but also link to conservation status, biogeographical characteristics, and evolutionary biology. Our technical validation shows a satisfactory agreement between observed and predicted longevity, generation time, age at maturity across all species. Compared to existing datasets, DEBBIES accommodates (i) easy cross-taxonomical comparisons because all DEB-IPMs have the same structure, (ii) many data-deficient species because no long-term individual data are required, and (iii) population forecasts to novel conditions because DEB-IPMs include a mechanistic description of the tradeoff between growth and reproduction. This dataset has the potential for biologists to unlock general predictions on ectotherm population responses from only a few key life history traits.
DOI: 10.3535/hrv-6d7-ett
title: Tabulata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ysd-slj-2kh
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14097983.v2
title: STR/Ort mouse epiphysis (male, 19w, #123.82) CT stack

description: CT stack of a male, 19-week-old STR/Ort mouse epiphysis .<br>Voxel size = 0.005 mm<br>Ethical approval for the animal procedures was carried out in accordance with the Animals (Scientific Procedures) Act 1986, an Act of Parliament of the United Kingdom, approved by the Royal Veterinary College Ethical Review Committee and the United Kingdom Government Home Office.
DOI: 10.3535/gdp-j7m-aym
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19323644.v2
title: Data and code to reproduce "Effects of occupancy estimation on abundance-occupancy relationships"

description: This repository contains the code and data to reproduce the analyses in :<br> Ten Caten, C., Holian, L., Dallas, T. "Effects of occupancy estimation on abundance-occupancy relationships" <br> In the Data.rar file we provide the datasets needed to run the code. The file MammalsData.RData contains the exact NEON small-mammal data used in our analyses. Thus, instead of using the function loadByProduct to download the data (line 36) from the NEON database (might take some time), the user can run line 38 and skip that part. <br> The second chunk of code download occurrence data for the species found in the NEON dataset from GBIF database. That chunk of code might also take a while to run, so we provide the final product (MammalsOccNEON.txt) that can be imported in line 201 so that chunk doesn't need to be run. <br> The third chunk of code create the spatial poligons for the species geographic range. We also provide these poligons (MammalsHull.RData) that can be loaded by running line 242 instead of running the entire code. Notice that if the poligons are imported, lines 207-213 in the third chunk will still needed to be run in order to name each poligon so that the rest of the code runs smoothly.
DOI: 10.6084/m9.figshare.27291078.v1
title: Questionnaire and interview guide

description: Questionnaire and interview guide
DOI: 10.3535/58w-6zl-bep
title: Orpiment

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t45-8rw-a1s
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vmy-sl9-7d5
title: Heliolitoidea

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24088632.v2
title: 1000G LD reference data

description: 1000G.EUR.QC.bim/fam/bed refer to the 1000G dataset. fourier_ls-all.bed is the block file.