cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wvhpnu
title: Occurrence Download

description: A dataset containing 95575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Passifloraceae"
 ]
}

 The dataset includes 95575 records from 410 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051877-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8qq8zu
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Pelophylax epeiroticus (Schneider, Sofianidou & Kyriakopoulou-Sklavounou, 1984)"
 ]
}

 The dataset includes 85 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043248-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eu72et
title: Occurrence Download

description: A dataset containing 423 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Odocoileus virginianus (Zimmermann, 1780)",
 "Year 1971-2021"
 ]
}

 The dataset includes 423 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0296963-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9j348x
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gordonia angustifolia (Britton & Wils.) H.Keng"
 ]
}

 The dataset includes 22 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164186-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9covlv
title: Occurrence Download

description: A dataset containing 7736 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cicerbita alpina (L.) Wallr."
 ]
}

 The dataset includes 7736 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012918-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nv3uq8
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Cophyla grandis (Boulenger, 1889)"
 ]
}

 The dataset includes 107 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043252-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5f2y9n
title: Occurrence Download

description: A dataset containing 224705 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "CoordinateUncertaintyInMeters 0.0-500.0",
 "Elevation 500.0-8000.0m",
 "Geometry POLYGON((-180 -23.437,180 -23.437,180 23.437,-180 23.437,-180 -23.437))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate reprojected",
 "Issue is Collection match fuzzy",
 "Issue is Institution match fuzzy"
 ]
 },
 "TaxonKey is Magnoliopsida"
 ]
}

 The dataset includes 224705 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0317611-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zuvase
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Adelphicos latifasciatum Lynch & Smith, 1966"
 ]
}

 The dataset includes 59 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012919-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w779wn
title: Occurrence Download

description: A dataset containing 228 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Pristimantis labiosus (Lynch, Ruiz-Carranza & Ardila-Robayo, 1994)"
 ]
}

 The dataset includes 228 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043246-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txrwca
title: Occurrence Download

description: A dataset containing 2066730 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oleaceae"
 ]
}

 The dataset includes 2066730 records from 1991 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0304726-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24790677.v1
title: Sulfated glycosaminoglycans are host epithelial cell targets of the Candida albicans secreted toxin candidalysin

description: Sulfated glycosaminoglycans (GAGs) were found to be host cell targets of candidalysin, a cytolytic toxin secreted by the fungal pathogen Candida albicans. Exogenous GAGs protected host cells from damage induced by candidalysin and live C. albicans.
DOI: 10.6084/m9.figshare.26042866
title: Erythropoietin regulates energy metabolism through EPO-EpoR-RUNX1 Axis

description: The original data of the "Erythropoietin regulates energy metabolism through EPO-EpoR-RUNX1 Axis" manuscript, the data includes Fig.1-7 and Fig.s1-s14
DOI: 10.6084/m9.figshare.26042866.v1
title: Erythropoietin regulates energy metabolism through EPO-EpoR-RUNX1 Axis

description: The original data of the "Erythropoietin regulates energy metabolism through EPO-EpoR-RUNX1 Axis" manuscript, the data includes Fig.1-7 and Fig.s1-s14
DOI: 10.15468/dl.5qhu4z
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Clossiana oscarus (Eversmann, 1844))",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1901",
 "Year is less than or equal to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019120-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25133444
title: Neoadjuvant nivolumab or nivolumab plus ipilimumab in early triple negative breast cancer with tumor infiltrating lymphocytes: the phase II BELLINI trial

description: Adverse events observed in BELLINI phase II trial
DOI: 10.6084/m9.figshare.25133444.v1
title: Neoadjuvant nivolumab or nivolumab plus ipilimumab in early triple negative breast cancer with tumor infiltrating lymphocytes: the phase II BELLINI trial

description: Adverse events observed in BELLINI phase II trial
DOI: 10.6084/m9.figshare.26005390
title: USP50 suppresses alternative RecQ helicase use and deleterious DNA2 activity during replication.

description: Source data files
DOI: 10.6084/m9.figshare.26005390.v1
title: USP50 suppresses alternative RecQ helicase use and deleterious DNA2 activity during replication.

description: Source data files
DOI: 10.15468/dl.hu2axj
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Boloria perryi)",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1901",
 "Year is less than or equal to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019121-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84rbky
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Ninguta schrenckii)",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1901",
 "Year is less than or equal to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 26 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019123-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26954056
title: UNITY Phantom QA example data

description: Example phantom quality assurance (QA) dataset from the UNITY phantom (CaliberMRI Mini-hybrid Model 137) acquired on a Hyperfine Swoop, 64 mT portable MRI system (Hyperfine Inc., Guilford, CT), at Lund University, Lund, Sweden. The dataset contains six exams carried out in 2023 with identical acquisitions, adhering to the UNITY Phantom QA protocol. The dataset is intended to be used as a test dataset for the <code>ghost</code> analysis framework. Please see further details in the ghost repository on GitHub for information about how to analyse this dataset.Data structureImage data is stored in the <code>DICOM</code> folder with subfolders indicating the date of data acquisition. Each exam contains 5 seriesFISP: Gradient echo scan to check internal thermometerT2 Axial, Fast: Geometric distortions, contrast, and SNRT2 Axial, Fast: Geometric distortions, contrast, and SNRT2 Coronal, Fast: Geometric distortionsT2 Sagittal, Fast: Geometric distortions
DOI: 10.15468/dl.rt2y4w
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Oeneis mongolica (Oberthür, 1876))",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1901",
 "Year is less than or equal to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019124-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czx4nv
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Satyrium eximium)",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1901",
 "Year is less than or equal to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 20 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019125-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13771114
title: QCA-2024-SCC-ID36679 R&D data

description: Project Code: QCA-2024-SCC-ID36679.This project is classified as CONFIDENTIAL. All information, data, and results associated with this project are strictly restricted to authorized personnel only. Any dissemination, distribution, or copying of the project details is strictly prohibited without prior approval from the project lead and the university's Office of Research Compliance.
DOI: 10.5281/zenodo.13771115
title: QCA-2024-SCC-ID36679 R&D data

description: Project Code: QCA-2024-SCC-ID36679.This project is classified as CONFIDENTIAL. All information, data, and results associated with this project are strictly restricted to authorized personnel only. Any dissemination, distribution, or copying of the project details is strictly prohibited without prior approval from the project lead and the university's Office of Research Compliance.
DOI: 10.15468/dl.maf86u
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Satyrium herzi)",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1901",
 "Year is less than or equal to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019126-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27043498.v1
title: Supplementary Material for: Differential Item Functioning and Clinical Utility of the Subjective Memory Complaints Questionnaire in a Multi-Ethnic Cohort

description: Introduction: This study evaluated psychometric properties of the Subjective Memory Complaints Questionnaire (SMCQ) in a non-Hispanic White (NHW) and Mexican American (MA) sample from Texas in the United States. 
 Methods: Data were obtained from the Health and Aging Brain Study – Health Disparities (HABS-HD; N=1691, age=66.5±8.7, education=12.4±4.8, 60.6% female, 33.2% MA Spanish-speaking). Unidimensionality of the SMCQ was evaluated with confirmatory factor analysis. Differential item functioning (DIF) of the SMCQ was assessed across age, sex, education, and ethnicity/language using item response theory (IRT) / logistic ordinal regression. Associations of the SMCQ in relation to cognitive status, Alzheimer’s disease (AD) blood-based biomarkers, and psychological distress were examined. 
 Results: The SMCQ showed excellent fit in a single-factor model (CFI=0.97, TLI=0.97, RMSEA [95% CI] = 0.05 [0.04, 0.05], SRMR=0.07). Significant item-level DIF was detected by education level and ethnicity/language, but not by age or sex; when detected, DIF was not salient (i.e., adverse). The SMCQ was associated with greater psychological distress, worse Clinical Dementia Rating scores, and greater disease burden as measured by total tau and neurofilament light. 
 Conclusions: Practically negligible item-level bias was identified across education and ethnicity/language. Detected DIF can be described as benign, indicating that some items manifested differently between groups but had minimal impact on measurement properties. These results demonstrate that the SMCQ performs appropriately across demographic variables. Our findings also provide support for the associations of SMCQ scores with self-reported mood, cognitive status, and AD blood-based biomarkers.
DOI: 10.15468/dl.qcdy4z
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Pictodiloma suavis (R.A.Philippi, 1850))",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1901",
 "Year is less than or equal to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019127-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.73ehk9
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Gerronema Singer, 1951"
 ]
}

 The dataset's 3 records were derived from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019110-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.94b6rg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Tectarius cumingii (R.A.Philippi, 1846))",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1901",
 "Year is less than or equal to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019128-240906103802322/datasets/export for details.
DOI: 10.5281/zenodo.13743458
title: Accompanying dataset for the paper "An implicit staggered algorithm for CPFEM-based analysis of aluminum"

description: Contributions



Pedro Areias did contribute to general programming and theory

Charles dos Santos did contribute to investigation, specific programming and validation

Rui Melicio  did contribute to the text and typesetting

Nuno Silvestre did contribute to the Scientific validation


Funding sources



FCT Fundação para a Ciência e a Tecnologia project LAETA Base Funding (DOI: 10.54499/UIDB/50022/2020)


Data structure and information



data                   - dataset directory


convertFig2Eps       - script to convert xfig sources to EPS

driftfigures         - data to assess drifting in \xi and effective strain 


cuboid.gid         - directory for a single cube analysis, to assess drifting



epcfigures           - these are the sources for the cylinder test with localization


cylindersinglecrystalcoarse.gid - cylinder with ( $\theta=0.25\pi,\phi=0$)

cylindersinglecrystalcoarseotherangles.gid - cylinder with ($\theta=0.304\pi,\phi=0.25\pi$")



errorlogstrain - contains the mathematica sheet for the plots in the logstrain error analysis

originalfigures - these are the original figures in the paper

padeerrorgraf - mathematica sheet for the analysis of padé approximation error

reactions - reactions sources for the localization problem



workflows - reproducibility of some of the computational results


Dataset Description

Contains:



Data sources from SimPlas (txt and order)

Gnuplot files (gp)

Tikz files (tikz)

XFig files (fig)

Mathematica scripts (nb)

Script to convert Xfig in Eps: figtex2eps.sh


Original figures are also included.

Paper Description

In this paper, we propose an implicit staggered algorithm for crystal plasticity finite element method (CPFEM) which makes use of dynamic relaxation at the constitutive integration level. An uncoupled version of the constitutive system consists of a multi-surface flow law complemented by an evolution law for the hardening variables. Since a saturation law is adopted for hardening, a sequence of nonlinear iteration followed by a linear system is feasible. To tie the constitutive unknowns, the dynamic relaxation method is adopted. A Green-Nagdhi plasticity model is adopted based on the Hencky strain calculated using a [ 2/2 ] Padé approximation. For the incompressible case, the approximation error is calculated exactly. A enhanced-assumed strain (EAS) element technology is adopted, which was found to be especially suited to localization problems such as the ones resulting from crystal plasticity plane slipping. Analysis of the results shows significant reduction of drift and well defined localization without spurious modes or hourglassing.
DOI: 10.5281/zenodo.13743459
title: Accompanying dataset for the paper "An implicit staggered algorithm for CPFEM-based analysis of aluminum"

description: Contributions



Pedro Areias did contribute to general programming and theory

Charles dos Santos did contribute to investigation, specific programming and validation

Rui Melicio  did contribute to the text and typesetting

Nuno Silvestre did contribute to the Scientific validation


Funding sources



FCT Fundação para a Ciência e a Tecnologia project LAETA Base Funding (DOI: 10.54499/UIDB/50022/2020)


Data structure and information



data                   - dataset directory


convertFig2Eps       - script to convert xfig sources to EPS

driftfigures         - data to assess drifting in \xi and effective strain 


cuboid.gid         - directory for a single cube analysis, to assess drifting



epcfigures           - these are the sources for the cylinder test with localization


cylindersinglecrystalcoarse.gid - cylinder with ( $\theta=0.25\pi,\phi=0$)

cylindersinglecrystalcoarseotherangles.gid - cylinder with ($\theta=0.304\pi,\phi=0.25\pi$")



errorlogstrain - contains the mathematica sheet for the plots in the logstrain error analysis

originalfigures - these are the original figures in the paper

padeerrorgraf - mathematica sheet for the analysis of padé approximation error

reactions - reactions sources for the localization problem



workflows - reproducibility of some of the computational results


Dataset Description

Contains:



Data sources from SimPlas (txt and order)

Gnuplot files (gp)

Tikz files (tikz)

XFig files (fig)

Mathematica scripts (nb)

Script to convert Xfig in Eps: figtex2eps.sh


Original figures are also included.

Paper Description

In this paper, we propose an implicit staggered algorithm for crystal plasticity finite element method (CPFEM) which makes use of dynamic relaxation at the constitutive integration level. An uncoupled version of the constitutive system consists of a multi-surface flow law complemented by an evolution law for the hardening variables. Since a saturation law is adopted for hardening, a sequence of nonlinear iteration followed by a linear system is feasible. To tie the constitutive unknowns, the dynamic relaxation method is adopted. A Green-Nagdhi plasticity model is adopted based on the Hencky strain calculated using a [ 2/2 ] Padé approximation. For the incompressible case, the approximation error is calculated exactly. A enhanced-assumed strain (EAS) element technology is adopted, which was found to be especially suited to localization problems such as the ones resulting from crystal plasticity plane slipping. Analysis of the results shows significant reduction of drift and well defined localization without spurious modes or hourglassing.