cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/2deda2ed289c50c2305e5dd0769fd7c9
title: Continuous salinity, temperature and depth measurements from moored hydrographic data loggers deployed at GCE8_Hydro (Altamaha River near Aligator Creek, Georgia) from 01-Jan-2010 through 31-Dec-2010

description: Conductivity, temperature and pressure were measured continuously at Georgia Coastal Ecosystems LTER sampling location GCE8_Hydro (Altamaha River near Aligator Creek, Georgia) from 01-Jan-2010 through 31-Dec-2010. Observations were logged at 30 minute intervals by moored Sea-Bird Electronics MicroCAT 37-SM data loggers and downloaded approximately semi-monthly. Salinity, depth and sigma-t (density anomaly) were calculated from the measured parameters using standard UNESCO algorithms. This data set was collected as part of the GCE-LTER Project continuous salinity, temperature and water level monitoring program.
DOI: 10.6084/m9.figshare.17194997
title: matlab files for Tabula Microcebus

description: <b>Instructions to read h5ad file in Matlab:</b> A mat file of the complete lemur cell atlas dataset converted from the h5ad file is provided in the Figshare files. We also provide a Matlab script to import the h5ad file to mat file: please download the h5ad file of interest, Matlab script “LCA_h5ad2Mat.m” and Matlab function “read_csmatrix.m” to the same folder, and run “LCA_h5ad2Mat.m”. <br>The mat file contains a single variable named “rawData”, a Matlab structure variable with the following fields:cells: a table of the sequenced cells with metadata for individual sequenced cells (features of the table includes above “/obs” and “/obsm” list for the h5ad file, e.g., cell_name, tissue, free_annotation_v1, and X_umap, but not the MHC counts which is included in tabMHC, see below).genes: gene tablename: NCBI gene symbol.highly_variable: whether the gene is highly variable (calculated for the entire dataset).mat_raw: a sparse matrix of the cell by gene transcript count (raw count).mat_X: a sparse matrix of the cell by gene transcript level after library size normalization and natural log transformation (i.e., smartseq2, ln(reads/N *1e4 +1); 10x, ln(UMI/N *1e4 +1), where N denotes the total number of reads or UMI of the cell).tabMHC: a table of the calculated raw counts for the major histocompatibility complex (MHC) genes (see the Tabula Microcebus manuscript for detail). Note the count is only available for cells sequenced by 10x method and count is NAN for cells sequenced by smartseq2 method. Both raw counts and normalized counts (labeled with prefix letter ‘n’) are provided.MHC_C_I, MHC_NC_I, MHC_all_II: sum of counts from classical Class I genes.nMHC_C_I, nMHC_NC_I, nMHC_all_II: sum of normalized counts from classical Class I genes.counts and normalized counts from individual classical Class I genes (Mimu_168, Mimu_W03, Mimu_W04, Mimu_249, nMimu_168, nMimu_W03, nMimu_W04, nMimu_249), non-classical Class I genes (Mimu_180ps, Mimu_191, Mimu_202, Mimu_208, Mimu_218, Mimu_229ps, Mimu_239ps, nMimu_180ps, nMimu_191, nMimu_202, nMimu_208, nMimu_218, nMimu_229ps, nMimu_239ps), and Class II genes (Mimu_DMA, Mimu_DMB, Mimu_DPA, Mimu_DPB, Mimu_DQA, Mimu_DQB, Mimu_DRA, Mimu_DRB, nMimu_DMA, nMimu_DMB, nMimu_DPA, nMimu_DPB, nMimu_DQA, nMimu_DQB, nMimu_DRA, nMimu_DRB). version: version of the data (name of the h5ad file converted from).
DOI: 10.6073/pasta/9959bd47200bd004d663732ea8d907a4
title: Continuous salinity, temperature and depth measurements from moored hydrographic data loggers deployed at GCE8_Hydro (Altamaha River near Aligator Creek, Georgia) from 01-Jan-2011 through 31-Dec-2011

description: Conductivity, temperature and pressure were measured continuously at Georgia Coastal Ecosystems LTER sampling location GCE8_Hydro (Altamaha River near Aligator Creek, Georgia) from 01-Jan-2011 through 31-Dec-2011. Observations were logged at 30 minute intervals by moored Sea-Bird Electronics MicroCAT 37-SM data loggers and downloaded approximately semi-monthly. Salinity, depth and sigma-t (density anomaly) were calculated from the measured parameters using standard UNESCO algorithms. This data set was collected as part of the GCE-LTER Project continuous salinity, temperature and water level monitoring program.
DOI: 10.6073/pasta/addc3b20bdee2e5f69eaca775e86ab52
title: Continuous salinity, temperature and depth measurements from moored hydrographic data loggers deployed at GCE8_Hydro (Altamaha River near Aligator Creek, Georgia) from 01-Jan-2012 through 31-Dec-2012

description: Conductivity, temperature and pressure were measured continuously at Georgia Coastal Ecosystems LTER sampling location GCE8_Hydro (Altamaha River near Aligator Creek, Georgia) from 01-Jan-2012 through 31-Dec-2012. Observations were logged at 30 minute intervals by moored Sea-Bird Electronics MicroCAT 37-SM data loggers and downloaded approximately semi-monthly. Salinity, depth and sigma-t (density anomaly) were calculated from the measured parameters using standard UNESCO algorithms. This data set was collected as part of the GCE-LTER Project continuous salinity, temperature and water level monitoring program.
DOI: 10.6073/pasta/c852a4783c02526d767e94d0bef90378
title: Continuous salinity, temperature and depth measurements from moored hydrographic data loggers deployed at GCE8_Hydro (Altamaha River near Aligator Creek, Georgia) from 01-Jan-2013 through 31-Dec-2013

description: Conductivity, temperature and pressure were measured continuously at Georgia Coastal Ecosystems LTER sampling location GCE8_Hydro (Altamaha River near Aligator Creek, Georgia) from 01-Jan-2013 through 31-Dec-2013. Observations were logged at 30 minute intervals by moored Sea-Bird Electronics MicroCAT 37-SM data loggers and downloaded approximately semi-monthly. Salinity, depth and sigma-t (density anomaly) were calculated from the measured parameters using standard UNESCO algorithms. This data set was collected as part of the GCE-LTER Project continuous salinity, temperature and water level monitoring program.
DOI: 10.6073/pasta/ffe61edd9c217752c67186938ba2545e
title: Continuous salinity, temperature and depth measurements from moored hydrographic data loggers deployed at GCE8_Hydro (Altamaha River near Aligator Creek, Georgia) from 01-Jan-2014 through 31-Dec-2014

description: Conductivity, temperature and pressure were measured continuously at Georgia Coastal Ecosystems LTER sampling location GCE8_Hydro (Altamaha River near Aligator Creek, Georgia) from 01-Jan-2014 through 31-Dec-2014. Observations were logged at 30 minute intervals by moored Sea-Bird Electronics MicroCAT 37-SM data loggers and downloaded approximately semi-monthly. Salinity, depth and sigma-t (density anomaly) were calculated from the measured parameters using standard UNESCO algorithms. This data set was collected as part of the GCE-LTER Project continuous salinity, temperature and water level monitoring program.
DOI: 10.6084/m9.figshare.14468196
title: scanpy/anndata files for Tabula Microcebus

description: We provide the cell by gene count data for the Tabula Microcebus mouse lemur scRNAseq cell atlas in Python’s h5ad and Matlab’s mat formats, as well as scripts to export the files to R’s Seurat format. Datasets are organized as described in https://tabula-microcebus.ds.czbiohub.org/. Datasets can also be explored and reannotated interactively using the cellxgene browser on the same web link.<br><br>LCA_complete_wRaw_toPublish.h5ad contains the entire atlas integrated using the FIRM algorithm (https://www.biorxiv.org/content/10.1101/2020.06.02.129031v2), while the other h5ad objects are individual tissues.<br>
DOI: 10.6084/m9.figshare.14468196.v3
title: Tabula Microcebus

description: Our goal is to make sequence data rapidly and broadly available to the scientific community as a community resource. It is our intention to publish the work of this project in a timely fashion, and we welcome collaborative interaction on the project and analyses. However, considerable investment was made in generating these data and we ask that you respect rights of first publication and acknowledgment as outlined in the Toronto agreement (Toronto International Data Release Workshop Authors. Prepublication data sharing. Nature. 2009 Sep 10;461(7261):168-70). By accessing these data, you agree not to publish any articles containing analyses of genes, cell types or transcriptomic data on a whole atlas or tissue scale prior to initial publication by the Tabula Microcebus Consortium and its collaborating scientists. If you wish to make use of restricted data for publication or are interested in collaborating on the analyses of these data, please use the contact form available from our data portal (https://tabula-microcebus.ds.czbiohub.org/). Redistribution of these data should include the full text of the data use policy.<br>
DOI: 10.5519/qd.3px40qop
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1116 records)
DOI: 10.17632/xb39kmybzn.1
title: "Parp1 promotes sleep, which enhances DNA repair in neurons", Study of Zada et al. 2021

description: This data is the original raw data for immunoblots, comet assays and imaging of all the results appear in the manuscript. The analysis was performed as mention in the methods section.
DOI: 10.25989/45af-7c53
title: Materials Experiment and Analysis Database: X-ray fluorescence analysis in which 0 sub-analyses are performed on plate(s) containing Cu,V,Ar,O annealed at 550.0C to add O on 2017-12-21 from Analysis 20171221.140118

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20171221.140118.copied-20171221223018310PST.zip <a class="btn btn-xs piwik_download" 
        type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/45af-7c53/20171221.140118.copied-20171221223018310PST.zip">
        <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/cfd8-az96
title: Materials Experiment and Analysis Database: Inkjet chemical deposition analysis in which 0 sub-analyses are performed on plate(s) containing Sn,Fe,Mn annealed at 750.0C to add O on 2017-06-08 from Analysis 20170608.163800

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20170608.163800.copied-20180927005957043PDT.zip <a class="btn btn-xs piwik_download" 
        type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/cfd8-az96/20170608.163800.copied-20180927005957043PDT.zip">
        <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/wm0x-9067
title: Materials Experiment and Analysis Database: Electrochemistry measurements containing 2 files performed on plate containing Au,Ar on 2017-10-05 from Run 20171005.162009

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20171005.162009.copied-20171006123627039PDT.zip <a class="btn btn-xs piwik_download" 
        type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/wm0x-9067/20171005.162009.copied-20171006123627039PDT.zip">
        <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/ykx3-ht82
title: Materials Experiment and Analysis Database: Electrochemistry measurements collected from 3 run(s) performed on plate(s) containing V,Fe,Ni,Ar,O annealed at 610.0C to add O on 2017-08-02 from Experiment 20170802.123609

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20170802.123609.copied-20170802221206976PDT.zip <a class="btn btn-xs piwik_download" 
        type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/ykx3-ht82/20170802.123609.copied-20170802221206976PDT.zip">
        <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/1sr8-dh04
title: Materials Experiment and Analysis Database: Inkjet chemical deposition measurements collected from 1 run(s) performed on plate(s) containing Ni,Fe,Co,Ce,Co annealed at 350.0C to add O on 2013-04-14 from Experiment 20130414.144649

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20130414.144649.copied-20180926160040915PDT.zip <a class="btn btn-xs piwik_download" 
        type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/1sr8-dh04/20130414.144649.copied-20180926160040915PDT.zip">
        <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/t8s6-am50
title: Materials Experiment and Analysis Database: X-ray diffraction analysis in which 0 sub-analyses are performed on plate(s) containing Ag,Fe,O,Ar,O, annealed at 550.0C to add O on 2017-01-12 from Analysis 20170112.152111

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20170112.152111.copied-20170112223113781PST.zip <a class="btn btn-xs piwik_download" 
        type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/t8s6-am50/20170112.152111.copied-20170112223113781PST.zip">
        <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/erdd-y219
title: Materials Experiment and Analysis Database: Optical spectroscopy measurements containing 2124 files performed on plate containing BiV,V,Sb,W,Gd,Gd,Mo,Tb annealed at 565.0C to add O on 2017-07-06 from Run 20170706.091346

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20170706.091346.copied-20170706100224611PDT.zip <a class="btn btn-xs piwik_download" 
        type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/erdd-y219/20170706.091346.copied-20170706100224611PDT.zip">
        <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/s9yy-e837
title: Materials Experiment and Analysis Database: Electrochemistry measurements collected from 1 run(s) performed on plate(s) containing Sn,Fe,Cu,Mn,Co,Ta annealed at 400.0C to add O on 2017-03-01 from Experiment 20170301.101901

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20170301.101901.copied-20170308132955800PST.zip <a class="btn btn-xs piwik_download" 
        type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/s9yy-e837/20170301.101901.copied-20170308132955800PST.zip">
        <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/58yt-rg84
title: Materials Experiment and Analysis Database: Inkjet chemical deposition measurements collected from 1 run(s) performed on plate(s) containing Sn,Sb,Mn,Ni,Co,Ca annealed at 400.0C to add O on 2017-03-08 from Experiment 20170308.104100

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20170308.104100.copied-20180926235900112PDT.zip <a class="btn btn-xs piwik_download" 
        type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/58yt-rg84/20170308.104100.copied-20180926235900112PDT.zip">
        <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/msqt-fx24
title: Materials Experiment and Analysis Database: Inkjet chemical deposition measurements containing 0 files performed on plate containing Ni,Fe,La,Ce,Co,Mn annealed at 400.0C to add O on 2016-05-25 from Run 20160525.102100

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20160525.102100.copied-20180926225758423PDT.zip <a class="btn btn-xs piwik_download" 
        type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/msqt-fx24/20160525.102100.copied-20180926225758423PDT.zip">
        <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/xkg6-7993
title: Materials Experiment and Analysis Database: Inkjet chemical deposition measurements collected from 1 run(s) performed on plate(s) containing BiIn,Mn,Sm,Ni annealed at 615.0C to add O on 2015-05-29 from Experiment 20150529.155600

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20150529.155600.copied-20180926214238910PDT.zip <a class="btn btn-xs piwik_download" 
        type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/xkg6-7993/20150529.155600.copied-20180926214238910PDT.zip">
        <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/ppgh-be47
title: Materials Experiment and Analysis Database: Inkjet chemical deposition measurements containing 0 files performed on plate containing Sn,Fe,Ca annealed at 750.0C to add O on 2017-08-09 from Run 20170809.155400

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20170809.155400.copied-20180927012444361PDT.zip <a class="btn btn-xs piwik_download" 
        type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/ppgh-be47/20170809.155400.copied-20180927012444361PDT.zip">
        <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.
DOI: 10.25989/889c-x998
title: Materials Experiment and Analysis Database: Inkjet chemical deposition analysis in which 0 sub-analyses are performed on plate(s) containing Fe,Co,Ce annealed at 750.0C to add O on 2017-06-08 from Analysis 20170608.163800

description: Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/<br>20170608.163800.copied-20180927010611327PDT.zip <a class="btn btn-xs piwik_download" 
        type="application/octet-stream" href="https://renc.osn.xsede.org/ini210004tommorrell/0_gregoire/889c-x998/20170608.163800.copied-20180927010611327PDT.zip">
        <i class="fa fa-download"></i> Download</a>    <br>
description: This record is a component of the Materials Experiment and
Analysis Database (MEAD). It contains raw data and metadata from millions 
of materials synthesis and characterization experiments, as well as the 
analysis and distillation of that data into property and performance 
metrics. The unprecedented quantity and diversity of experimental data 
are searchable by experiment and analysis attributes generated by both 
researchers and data processing software.