cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/47kvzxmgkg.1
title: Balancing of mitochondrial translation through METTL8-mediated m3C modification of mitochondrial tRNAs, A Study of Eva Schöller

description: Mitochondria contain a specific translation machinery for the synthesis of mitochondria-encoded respiratory chain components. Mitochondrial tRNAs (mt-tRNAs) are also generated from the mitochondrial DNA and, similar to their cytoplasmic counterparts, are post-transcriptionally modified. Here, we find that the RNA methyltransferase METTL8, is a mitochondrial protein that facilitates m3C methylation at position C32 of mt-tRNASer(UCN) and mt-tRNAThr. METTL8 knock-out cells show a reduction in respiratory chain activity, whilst over-expression increases activity. In pancreatic cancer, METTL8 levels are high, which correlates with lower patient survival and an enhanced respiratory chain activity. Mitochondrial ribosome profiling uncovered mitoribosome stalling on mt-tRNASer(UCN)- and mt-tRNAThr-dependent codons. Further analysis of the respiratory chain complexes using mass spectrometry revealed reduced incorporation of the mitochondrially encoded proteins ND6 and ND1 into complex I. The well-balanced translation of mt-tRNASer(UCN)- and mt-tRNAThr-dependent codons through METTL8-mediated m3C32 methylation might therefore facilitate the optimal composition and function of the mitochondrial respiratory chain.
DOI: 10.17632/2v75sp987f.1
title: Computational data for the article »Corrosion inhibitors: physisorbed or chemisorbed?«

description: This dataset contains Quantum ESPRESSO input and output files for reproducing the example-1 (in particular electron charge density differences) presented in the article entitled "Corrosion inhibitors: physisorbed or chemisorbed?" by Anton Kokalj that was submitted for publication in Corrosion Science.

The zip file unzips into the folder MendeleyData. Please read the README.txt file therein for further description of files.
DOI: 10.17632/sv95c7ydpy.2
title: Dataset for Social and Psychological Effects of the COVID-19 Pandemic in Turkey

description: This data was collected to investigate how intolerance to distress and anxiety affects some of the behaviors that can be changed in response to the Covid-19 pandemic. This dataset comes from a survey of 2,868 people in Turkey about the effects of the Covid -19 pandemic. The dataset is ideal for studying how the Covid -19 pandemic shaped people's intolerance to distress and anxiety. The survey looked at personal cleaning habits, bank/credit card usage, online shopping, personal security, and stockpiling. The data also included whether an individual or a household member had been officially diagnosed with Covid-19 and socio-demographic data.
DOI: 10.17632/gbdfwg325y.1
title: Bacteriostatic antibiotics promote CRISPR-Cas adaptive immunity against phages by enabling increased spacer acquisition

description: Phages impose strong selection on bacteria to evolve resistance against viral predation. Bacteria can rapidly evolve phage resistance via receptor mutation, or using their CRISPR-Cas adaptive immune systems. Acquisition of CRISPR immunity relies on the insertion of a phage-derived sequence into CRISPR arrays in the bacterial genome. Using Pseudomonas aeruginosa and its phage DMS3vir as a model, we demonstrate that conditions that reduce bacterial growth rates, such as exposure to bacteriostatic antibiotics (which inhibit cell growth without killing), promote the evolution of CRISPR immunity. We demonstrate that this is due to slower phage development under those conditions, which provides more time for cells to acquire phage-derived sequences and mount an immune response. Our data reveal that the speed of phage development is a key determinant of the evolution of CRISPR immunity, and suggest that use of bacteriostatic antibiotics can trigger elevated levels of CRISPR immunity in human-associated and natural environments.
DOI: 10.17632/x2s5mcwzdy.1
title: Mechanical properties of roads unbound treated with synthetic fluid based on isoalkane and tall oil

description: The dataset deals with a laboratory investigation of an innovative stabilization technology for road unbound layers. The product is a Synthetic Fluid (SF) based on isoalkane and tall oil. Untreated aggregates (Unbound Granular Material, UGM) are also tested for comparison purpose.

Two laboratory tests are performed: Repeated Load Triaxial Test (RLTT) and a modified version of Rolling Bottle Test (RBT). A total of 8 samples (4 parallel samples) are created and tested with RLTT; among these specimens, 2 samples are also tested with RLTT before and after the exposure to 10 Freeze-Thaw (FT) cycles. A total of 84 samples are created and tested with the modified version of RBT. This dataset reports raw data and pictures for all the tested samples.

RLTTs are performed following the code “EN 13286-7 Cyclic load triaxial test for unbound mixtures” according to Multi-Stage Low Stress Level (MS LSL) testing procedure. The spreadsheets showing the RLTTs results report the dynamic stress and the triaxial stress exerted in the testing device and the axial strains and the radial strains measured by a total of six Linear Variable Differential Transformers (LVDTs). Three different application percentages of the synthetic fluid are investigated (SF-1, SF-2, SF-3) with presence of water (w=1%). UGM samples are tested in dry condition (w=0%). The 2 SF-1 samples are also tested in dry condition (w=0%) after and before the exposure to 10 FT cycles.

The modified version of RBT described by the code “EN 12697-11 Determination of the affinity between aggregate and bitumen” pivots on weighing the mass of aggregates completely covered by the synthetic fluid before and after rotations for fourteen different time intervals: 1 h, 2 h, 3 h, 4 h, 5 h, 6 h, 8 h, 10 h, 12 h, 14h, 16 h, 20 h and 24 h. Uncoated aggregates are also tested for comparison purpose.
DOI: 10.17632/7zkyh9kdnd.1
title: Firm Equity Risk, Bank Lending Standards, and the Macroeconomy Data

description: Complete dataset and codes for the paper
DOI: 10.17632/88y3nffs82.1
title: Impacts of the Covid-19 Pandemic on Life of Higher Education Students: Global Survey Dataset from the First Wave

description: The Covid-19 pandemic caused by the novel coronavirus SARS-CoV-2 has completely reshaped the lives of people around the world, including higher
education students. Beyond serious health consequences for a proportion of those directly affected by the virus, the pandemic holds important
implications for the life and work of higher education students, considerably affecting their physical and mental well-being. To capture how
students perceived the first wave of the pandemic’s impact, one of the most comprehensive and large-scale online surveys across the world was
conducted. Carried out between 5 May 2020 and 15 June 2020, the survey came at a time when most countries were experiencing the arduous lockdown
restrictions. The online questionnaire was prepared in seven different languages (English, Italian, North Macedonian, Portuguese, Romanian, 
Spanish, Turkish) and covered various aspects of higher education students’ life, including socio-demographic and academic characteristics, 
academic life, infrastructure and skills for studying from home, social life, emotional life and life circumstances. Using the convenience 
sampling method, the online questionnaire was distributed to higher education students aged 18 and over and enrolled in a higher education 
institution. The final dataset consisted of 31,212 responses from 133 countries and 6 continents. The data may prove useful for researchers 
studying the pandemic’s impacts on various aspects of student life. Policymakers can utilize the data to determine the best solutions as they
formulate policy recommendations and strategies to support students during this and any future pandemic.

Acknowledgments
The extensive dataset could not be collected without the numerous international partners who provided the exceptional assistance with 
questionnaire translation and/or data collection. This work also acknowledges the international partners, who may have been unintentionally 
omitted from authorship due to the snowball recruitment technique. Special thanks go also to anonymous global survey participants for their 
valuable insights into the lives of students, which they shared selflessly. The authors also acknowledge the CovidSocLab project 
(http://www.covidsoclab.org/) as a working platform for international collaboration.

Funding
The authors acknowledge the financial support from the Slovenian Research Agency (research core funding No. P5-0093).
DOI: 10.17632/7x2mj8nvbn.1
title: Contacts, motion and chain-breaking in a two-dimensional granular system displaced by an intruder

description: These files contain an example of the setup required to perform and analyze a numerical simulation  of the motion of an intruder within a two-dimensional granular system. The simulation is carried out using the open-source free DEM software LIGGGHTS. Specifically, we make use of the 3.1.0 version to interact with the DESIgn code, that allows us to perform two-dimensional simulations considering cylindrical particles. The dataset contains an example case of the initialization, simulation, Octave and Matlab codes for post-processing the results, and the code implemented in LIGGGHTS to introduce basal friction effects.
DOI: 10.17632/6bmzzf4rcv.1
title: E-FABP promotes Nair-induced skin inflammation 

description: Affymetrix Analysis of Nair-treated skin samples from WT and E-FABP-/- mice
DOI: 10.17632/btwnt7yb5m.1
title: Accurate identification of circRNA landscape and complexity reveals their pivotal roles in human oligodendroglia differentiation

description: Western blot of EIF5 and QKI5 in M17 (3) and HOG (2)
DOI: 10.17632/zv83z9d4mg.1
title: Collective Compass to Unit Performance

description: This study addressed the gap in understating the collective process and its impact on organizational unit performance by examining the effects of collective transformational leadership, collective trust and collective work engagement on unit performance using conservation of resources theory. The data obtained from two sources: 450 employees in 74 agencies in financial organization in Peru and the unit performance obtained from the organization system 4 months after the collection of the employee survey data. The results of multiple structural equation modeling analyses showed that the relationship between collective transformational leadership and unit performance was sequentially mediated by collective trust and collective engagement. This study highlights the importance of examining the impact of organizational factors together and how employees’ perceptions can enhance engagement and performance across the overall organization.

Keywords: collective transformational leadership, collective engagement, collective
DOI: 10.17632/6f3trnj2ym.1
title: TLS data for cracks detection in building walls 

description: The research programme included two stages, the laboratory and the field, so the datasets are divided into two groups of data. During both measurement stages, a phase-shift (PS) scanner Z + F 5016 IMAGER (manufactured in 2019) was used. In the laboratory stage, a specimen of white silicate with ten grooves with widths from 1 mm to 10 mm was scanned. The specimen was tested from four distances, and at five angles of incidence for each of these distances, as follows:
- 5 m (0 gon, 20 gon, 40 gon, 60 gon, and 80 gon)
- 10 m (0 gon, 20 gon, 40 gon, 60 gon, and 80 gon)
- 15 m (0 gon, 20 gon, 40 gon, 60 gon, and 80 gon)
- 20 m (0 gon, 20 gon, 40 gon, 60 gon, and 80 gon)
Such a measurement scheme provided twenty different ‘geometric’ measurement conditions. For the field tests, three real buildings with poor technical conditions (with cracks of different widths and depths) were used. In this stage, four of the above-mentioned measurement conditions were verified. For the post-processing of datasets and mapping of results, the open-source CloudCompare software was used. 
The structure of the name of the files is as follows:
XXgonYYm.bin - where XX stands for the angle of incidence [gon], and YY stands for the distance in meters from TLS to target [m].
DOI: 10.17632/9zxt47grjf.2
title: Temperature-dependent gene expression in chick neural progenitors

description: RNA sequence data of differentially expressed genes in chick neural progenitors cultured at 30ºC and 37ºC.
DOI: 10.17632/vt8h2hmz3n.1
title: Therapeutic Effect and safety of dupilumab 

description: supplement figures
DOI: 10.17632/9rxg3tc8s2.1
title: Data, metrics, and methods for arthropod and fungal herbivory at the dawn of angiosperm diversification: The Rose Creek plant assemblage of Nebraska, U.S.A.

description: This is the supplementary material referred to the Data in Brief text, and the Data in Brief text is associated with our manuscript "Arthropod and fungal herbivory at the dawn of angiosperm diversification: The Rose Creek plant assemblage of Nebraska, U.S.A.".
Appendices of the Supporting Information furnish data, extended documentation, and a review of the relevant literature that bolster various aspects of the plant–insect interactions of the Rose Creek locality presented in the main text of Data in brief. Appendices S1 to S3 provide ancillary accounts at a global level of plant-organismic associations present during the Early Cretaceous relevant to the Rose Creek locality. Appendix S4 displays the botanical context of the Rose Creek locality, whereas Appendices S5–S10 discuss the procedures for processing and databasing the Rose Creek plant assemblage, including criteria for establishing plant taxa and distinguishing herbivory from detritivory, rarefaction analyses of the plant specimens and damage types (DTs), and a recent study of insect damage on Rose Creek flowers. The rarefaction analyses of plant specimens and damage types versus surface areas (Appendix S9) indicate adequate sampling. Appendices S11, S12 and S16 supply the basic data of functional feeding groups, raw plant damage, and host specificity. Photographic images represent continuation of Figures 2 to 6 of the main text, presented here as Appendix S13 with figures S1–S15 that documents the extraordinary breadth of the functional feeding groups (FFGs) and damage types (DTs). Appendix S14 provides brief discussions of the fossil histories of the 11 functional feeding groups occurring at Rose Creek. The host specialization assignments for each damage type (DT) are listed in Appendix S15. The composition of the plant taxa included in the nonmetric multidimension analysis (Fig. 11) is provided in Appendix S17. We present descriptions and data for the 14 new Rose Creek DTs, representing six FFGs, in Appendix S18. These new DTs will be included in forthcoming Version 4 of the Guide to Insect (and Other) Damage Types on Compressed Plant Fossils (Labandeira et al., 2007). Appendices S19–S25 address in greater detail issues broached in the Discussion section of the manuscript.
DOI: 10.17632/c5m8gz95p5.1
title: Argyreia siamensis pollination data (Jirabanjongjit et al.)

description: Pollination and floral biology of a rare morning glory species endemic to Thailand, Argyreia siamensis
Awapa Jirabanjongjit, Paweena Traiperm, Tomoki Sando, & Alyssa B. Stewart

The pollination ecology of Argyreia siamensis (Craib) Staples (Convolvulaceae) was examined at two populations in Thailand. Two data sets were used when analyzing the results of this study (see attached); descriptions of the data sets are provided below.

Pollination Experiment Data
- Population: the plant population where the data was collected (western = Ratchaburi province, eastern = Nakhon Ratchasima province)
- Plant_ID: the label of the plant individual
- Treatment: the experimental treatment used (treatment names are the same as those used in "Pollination and floral biology of a rare morning glory species endemic to Thailand, Argyreia siamensis")
- Fruit_Weight: weight (in grams) of the mature fruit collected at the end of the pollination experiment 
- Seed_Weight: weight per seed (in grams) of the seeds removed from the mature fruit collected at the end of the pollination experiment 
- Ovary_Diameter: diameter (in centimeters) of the developing ovary (did not develop into mature fruit due to heavy rains)
- Notes: indicates which fruits were lost before we could collect them

Floral Visitor Data
- Population: the plant population where the data was collected (western = Ratchaburi province, eastern = Nakhon Ratchasima province)
- Date: date that the floral visitor was observed
- Plant_ID: the label of the plant individual
- Taxa: name of floral visitor
- Nvisits: how many times the floral visitor was observed at flowers
- Hours: total number of hours filmed
- VisitationRate: number of visits per hour
DOI: 10.5281/zenodo.5642892
title: African Red Slip Ware Digital (ARS3D) - Ontology

description: Characteristic of the North African bowls, plates, and jugs are their pictorial decorations applied mainly by appliqués and stamps. As mass-produced image carriers and everyday objects, the ARS spread throughout the empire. The range of motifs includes mythological scenes as well as scenes from the Old and New Testament, circus, arena and hunting scenes as well as fish and plant motifs. The appliqués-decorated pottery thus provides insights into Late Antique imagination and its changes, as well as into the economic history of the period between the 3rd and 5th centuries AD in North Africa. Previous documentation methods were not able to capture the objects and their decoration in an adequate way. The digital recording of the RGZM's collections by 3D scans allows to compare potentially identical appliqués and to assign them to their negative forms and the corresponding stamps. Whereas vessel curvature previously falsified the assignment of appliqués and models, 3D analysis and visualisation tools now allow a comparison . Metadata created for each object increases the effectiveness and accuracy of determining image context and content. Issues related to the production of the ARS and the process flows within the workshops can be investigated through the analysis of the 3D data. The developed ontology uses CIDOC CRM and various extensions. The data mainly consists of objects (E24), on which e.g. applications (features, E25) can be found. These objects can be described semantically, e.g. by the shape or time epoch. Features are described with observations, e.g. a human type man standing and wearing a beard. These observations lead to interpretations whose arguments can be observations.
DOI: 10.5281/zenodo.5642891
title: African Red Slip Ware Digital (ARS3D) - Ontology

description: Characteristic of the North African bowls, plates, and jugs are their pictorial decorations applied mainly by appliqués and stamps. As mass-produced image carriers and everyday objects, the ARS spread throughout the empire. The range of motifs includes mythological scenes as well as scenes from the Old and New Testament, circus, arena and hunting scenes as well as fish and plant motifs. The appliqués-decorated pottery thus provides insights into Late Antique imagination and its changes, as well as into the economic history of the period between the 3rd and 5th centuries AD in North Africa. Previous documentation methods were not able to capture the objects and their decoration in an adequate way. The digital recording of the RGZM's collections by 3D scans allows to compare potentially identical appliqués and to assign them to their negative forms and the corresponding stamps. Whereas vessel curvature previously falsified the assignment of appliqués and models, 3D analysis and visualisation tools now allow a comparison . Metadata created for each object increases the effectiveness and accuracy of determining image context and content. Issues related to the production of the ARS and the process flows within the workshops can be investigated through the analysis of the 3D data. The developed ontology uses CIDOC CRM and various extensions. The data mainly consists of objects (E24), on which e.g. applications (features, E25) can be found. These objects can be described semantically, e.g. by the shape or time epoch. Features are described with observations, e.g. a human type man standing and wearing a beard. These observations lead to interpretations whose arguments can be observations.
DOI: 10.17632/f286br875d.2
title: Modeling the Dynamics of a Gyroscopic Rigid Rotor with Linear and Nonlinear Damping and Nonlinear Stiffness of the Elastic Support

description: This study analytically and numerically modeled the dynamics of a gyroscopic rigid rotor with linear and nonlinear cubic damping and nonlinear cubic stiffness of an elastic support. It has been shown that (i) joint linear and nonlinear cubic damping significantly suppresses the vibration amplitude (including the maximum) in the resonant velocity region and beyond it and (ii) joint linear and nonlinear cubic damping more effectively affects the boundaries of the bistability region by its narrowing than linear damping. A methodology is proposed for determining and identification the coefficients of nonlinear stiffness, linear damping, and nonlinear cubic damping of the support material, at which jump-like effects are eliminated. Damping also affects the stability of motion; if linear damping shifts the left boundary of the instability region towards large amplitudes and speeds of rotation of the shaft, then nonlinear cubic damping can completely eliminate it. The varying amplitude (VAM) method used to determine the nature of the system response, supplemented with the concept of "slow" time, which allows us to investigate and analyze the effect of nonlinear cubic damping and nonlinear rigidity of cubic order on the frequency response at a nonstationary resonant transition.
DOI: 10.17632/ngntc2944b.2
title: Modeling the Dynamics of a Gyroscopic Rigid Rotor with Linear and Nonlinear Damping and Nonlinear Stiffness of the Elastic Support

description: This study analytically and numerically modeled the dynamics of a gyroscopic rigid rotor with linear and nonlinear cubic damping and nonlinear cubic stiffness of an elastic support. It has been shown that (i) joint linear and nonlinear cubic damping significantly suppresses the vibration amplitude (including the maximum) in the resonant velocity region and beyond it and (ii) joint linear and nonlinear cubic damping more effectively affects the boundaries of the bistability region by its narrowing than linear damping. A methodology is proposed for determining and identification the coefficients of nonlinear stiffness, linear damping, and nonlinear cubic damping of the support material, at which jump-like effects are eliminated. Damping also affects the stability of motion; if linear damping shifts the left boundary of the instability region towards large amplitudes and speeds of rotation of the shaft, then nonlinear cubic damping can completely eliminate it. The varying amplitude (VAM) method used to determine the nature of the system response, supplemented with the concept of "slow" time, which allows us to investigate and analyze the effect of nonlinear cubic damping and nonlinear rigidity of cubic order on the frequency response at a nonstationary resonant transition.