cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5479822
title: Compendium of American Amphitropical Vascular Plant Disjunctions

description: <b>A compendium of examples of American amphitropical disjunctions (AAD)</b>, focusing (for now) only on vascular plants, with supporting data on chromosome number, dispersal direction, distribution, divergence time, propagule morphology, speciation rate, and taxonomy. Available here as an Excel spreadsheet.Current number of AAD vascular plant examples: <b>237</b> These data stem originally from: Simpson, M. G., L. A. Johnson, T. Villaverde, and C. M. Guilliams. 2017. American Amphitropical Disjuncts: Perspectives from vascular plant analyses and prospects for future research. <i>American Journal of Botany</i> 104: 1600-1650. https://doi.org/10.3732/ajb.1700308 <b>Actively updated web pages</b>, derived from the spreadsheets, are accessible at: http://www.sci.sdsu.edu/plants/AAD<b>Bibliography</b> of references pertinent to the study of AADs is available at: http://www.sci.sdsu.edu/plants/AAD/lit.htm<b>Links</b> pertinent to the study of AADs are tabulated here: http://www.sci.sdsu.edu/plants/AAD/links.htm<b>To join the American amphitropical disjunction Working Group </b>(https://figshare.com/projects/American_Amphitropical_Disjunctions_AAD_Working_Group/25510): 1) set up a (free) account in figshare; 2) email Michael Simpson (msimpson@mail.sdsu.edu) your request. It should be processed within a day. You may use the comments below to ask questions, make suggestions, or elicit conversations or collaborations concerning AADs. To make a contribution toward updating this list of AAD vascular plants, you may:1) Make a comment below regarding a needed change; and/or2) Contact Michael Simpson (msimpson@mail.sdsu.edu) with specific suggestions, including highlighting changes on the spreadsheet here. <br>
DOI: 10.5281/zenodo.4010193
title: Measuring the Optical Absorption of Single Nanowires

description: In this work we present a method to quantitatively measure the optical absorption of single nanowires that can be applied over a wide range of temperatures and with a high enough sensitivity to enable the measurement of below-band-gap absorption (as well as the absorption of single molecules). The method is based on accurately measuring the heat flow coming from a nanowire when it is illuminated by a laser beam. We experimentally verify this method by measuring the absorption of both a zincblende and a wurtzite GaAs, a wurtzite GaP, and a superlattice Zn3P2 nanowire. Furthermore, we find that the Zn3P2 nanowires have the largest absorption of all these materials. We analyze the advantages and disadvantages of the method and study its range of applicability.
description: I.Z. has received funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (Grant Agreement No. 756365) and Swiss National Science Foundation research grant (Project Grant No. 200021 165784). A.F.M. acknowledges funding from the Swiss National Science Foundation research grant (Project Grant No. BSCGI0-157705) and H2020 program through grant INDEED. H.D. acknowledges financial support by the Ministry of Education, Youth and Sports of the Czech Republic under the project CEITEC 2020 (LQ1601). M.D.L. acknowledges support from the Swiss National Science Foundation under the Ambizione grant (Grant No. PZ00P2 179801).
DOI: 10.5281/zenodo.4010192
title: Measuring the Optical Absorption of Single Nanowires

description: In this work we present a method to quantitatively measure the optical absorption of single nanowires that can be applied over a wide range of temperatures and with a high enough sensitivity to enable the measurement of below-band-gap absorption (as well as the absorption of single molecules). The method is based on accurately measuring the heat flow coming from a nanowire when it is illuminated by a laser beam. We experimentally verify this method by measuring the absorption of both a zincblende and a wurtzite GaAs, a wurtzite GaP, and a superlattice Zn3P2 nanowire. Furthermore, we find that the Zn3P2 nanowires have the largest absorption of all these materials. We analyze the advantages and disadvantages of the method and study its range of applicability.
description: I.Z. has received funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (Grant Agreement No. 756365) and Swiss National Science Foundation research grant (Project Grant No. 200021 165784). A.F.M. acknowledges funding from the Swiss National Science Foundation research grant (Project Grant No. BSCGI0-157705) and H2020 program through grant INDEED. H.D. acknowledges financial support by the Ministry of Education, Youth and Sports of the Czech Republic under the project CEITEC 2020 (LQ1601). M.D.L. acknowledges support from the Swiss National Science Foundation under the Ambizione grant (Grant No. PZ00P2 179801).
DOI: 10.6084/m9.figshare.5479750
title: Calanoid copepod species richness Data&Analyses

description: 1) Calanoid copepod species richness data from IBSS & LB 2) Monthly mean sea temperature data from WOA in the Mediterranean regions :<b>Rajakaruna & Lewis (2017) </b><b>Do yearly temperature cycles reduce species richness? Insi</b><b>ghts from calanoid copepods, J. Theoretical Ecology). </b>3) Generation time data from Huntley, M. E., and M. D. Lopez. 1992. Temperature-dependent production of marine copepods: a global synthesis. American Naturalist 201-242.<br><b></b>
DOI: 10.6084/m9.figshare.5479750.v1
title: Calanoid copepod species richness Data&Analyses

description: 1) Calanoid copepod species richness data from IBSS & LB 2) Monthly mean sea temperature data from WOA in the Mediterranean regions :<b>Rajakaruna & Lewis (2017) </b><b>Do yearly temperature cycles reduce species richness? Insi</b><b>ghts from calanoid copepods, J. Theoretical Ecology). </b>3) Generation time data from Huntley, M. E., and M. D. Lopez. 1992. Temperature-dependent production of marine copepods: a global synthesis. American Naturalist 201-242.<br><b></b>
DOI: 10.6084/m9.figshare.5479702
title: Identification of Δ<sup>1</sup>-pyrroline 5-carboxylate synthase (<i>P5CS</i>) genes involved in the synthesis of proline in <i>Lotus japonicus</i>

description: Proline accumulation is a common response of plants to different biotic and abiotic stresses. In the model legume <i>Lotus japonicus</i>, osmotic stress-induced proline accumulation is one of the first responses of the plant, converting proline in a reliable stress marker. The main biosynthetic pathway of proline is from glutamate and the reaction catalyzed by the enzyme Δ<sup>1</sup>-pyrroline 5-carboxylate synthase (P5CS) is the rate limiting step. <i>L. japonicus</i> has been suggested to have three different <i>P5CS</i> genes. Here the predicted <i>P5CS</i> genes of <i>L. japonicus</i> were analyzed <i>in silico</i> and their expression under osmotic stress was determined. Contrary to previous suggestions this study demonstrated that <i>L. japonicus</i> has two different <i>P5CS</i> genes, as most dicotyledonous plants do. The gene that is inducible by osmotic stress and is located on chromosome 1, was called <i>LjP5CS1</i>, and the one located on chromosome 2 and not inducible by osmotic stress was called <i>LjP5CS2</i>.
DOI: 10.6084/m9.figshare.5479702.v2
title: Identification of Δ<sup>1</sup>-pyrroline 5-carboxylate synthase (<i>P5CS</i>) genes involved in the synthesis of proline in <i>Lotus japonicus</i>

description: Proline accumulation is a common response of plants to different biotic and abiotic stresses. In the model legume <i>Lotus japonicus</i>, osmotic stress-induced proline accumulation is one of the first responses of the plant, converting proline in a reliable stress marker. The main biosynthetic pathway of proline is from glutamate and the reaction catalyzed by the enzyme Δ<sup>1</sup>-pyrroline 5-carboxylate synthase (P5CS) is the rate limiting step. <i>L. japonicus</i> has been suggested to have three different <i>P5CS</i> genes. Here the predicted <i>P5CS</i> genes of <i>L. japonicus</i> were analyzed <i>in silico</i> and their expression under osmotic stress was determined. Contrary to previous suggestions this study demonstrated that <i>L. japonicus</i> has two different <i>P5CS</i> genes, as most dicotyledonous plants do. The gene that is inducible by osmotic stress and is located on chromosome 1, was called <i>LjP5CS1</i>, and the one located on chromosome 2 and not inducible by osmotic stress was called <i>LjP5CS2</i>.
DOI: 10.6084/m9.figshare.5479702.v1
title: <b>Identification of Δ<sup>1</sup>-pyrroline 5-carboxylate synthase (<i>P5CS</i>) genes involved in the synthesis of proline in <i>Lotus</i> <i>japonicus</i></b>

description: Proline accumulation is a common response of plants to different biotic and abiotic stresses. In the model legume <i>Lotus japonicus</i>, osmotic stress-induced proline accumulation is one of the first responses of the plant, converting proline in a reliable stress marker. The main biosynthetic pathway of proline is from glutamate and the reaction catalysed by the enzyme Δ<sup>1</sup>-pyrroline 5-carboxylate synthase (P5CS) is the rate limiting step. <i>L. japonicus</i> has been suggested to have three different <i>P5CS</i> genes. Here the predicted <i>P5CS</i> genes of <i>L. japonicus</i> were analysed <i>in silico</i> and their expression under osmotic stress was determined. Contrary to previous suggestions this study demonstrated that <i>L. japonicus</i> has 2 different <i>P5CS</i> genes, as most dicotyledonous plants do. The gene that is inducible by osmotic stress and is located on chromosome 1, was called <i>LjP5CS1</i>, and the one located on chromosome 2 and not inducible by osmotic stress was called <i>LjP5CS2</i>.
DOI: 10.6084/m9.figshare.5479594
title: Crossing data

description: Crossing data for sCA x AZ and nCA x MT.
DOI: 10.6084/m9.figshare.5479588
title: SeedMe: Data sharing building blocks

description: The need for data sharing and rapid data access has become central with the rise of collaborative research in many disciplines. For the general public, several file sharing products are available that post and share files using web browsers. But for science data and research use, these products are not well suited. While consumer products get by with manual user interfaces to add and remove a few shared files, this is not practical for sharing large numbers of science data files, like those generated during and after large-scale computation. Instead, automated and scriptable mechanisms are required that can integrate into computation workflows to post files during and after computation jobs. Scientific data sharing also requires support for collaborative discussion of research results, quick rough-draft visualizations to analyze the data, and support for metadata and descriptive information that can record job and compute platform characteristics, input data, job parameters, job completion status, and other provenance information.<br>Here we describe work in progress under the umbrella of the <b>SeedMe (Stream, Encode, Explore and Disseminate My Experiments) project</b> that is developing scientific data-sharing and data management tools that cater to the unique needs of computational scientists. These tools support automated and scriptable access to shared data, browser-based data access, secure data storage, sharing with a project workgroup, data descriptions and metadata, threaded collaborative discussion, and light-weight visualization.
DOI: 10.6084/m9.figshare.5479594.v1
title: Crossing data

description: Crossing data for sCA x AZ and nCA x MT.
DOI: 10.6084/m9.figshare.5479588.v2
title: SeedMe: Data sharing building blocks

description: The need for data sharing and rapid data access has become central with the rise of collaborative research in many disciplines. For the general public, several file sharing products are available that post and share files using web browsers. But for science data and research use, these products are not well suited. While consumer products get by with manual user interfaces to add and remove a few shared files, this is not practical for sharing large numbers of science data files, like those generated during and after large-scale computation. Instead, automated and scriptable mechanisms are required that can integrate into computation workflows to post files during and after computation jobs. Scientific data sharing also requires support for collaborative discussion of research results, quick rough-draft visualizations to analyze the data, and support for metadata and descriptive information that can record job and compute platform characteristics, input data, job parameters, job completion status, and other provenance information.<br>Here we describe work in progress under the umbrella of the <b>SeedMe (Stream, Encode, Explore and Disseminate My Experiments) project</b> that is developing scientific data-sharing and data management tools that cater to the unique needs of computational scientists. These tools support automated and scriptable access to shared data, browser-based data access, secure data storage, sharing with a project workgroup, data descriptions and metadata, threaded collaborative discussion, and light-weight visualization.
DOI: 10.6084/m9.figshare.5479621.v1
title: Catalysis of C-H Functionalization of Methane into Industrial Intermediates

description: C-H bond activation catalysis<br>
DOI: 10.6084/m9.figshare.5478934
title: Redesigning PlantingScience.org: The Role of User Experience Evaluation in Improving a HUBzero Gateway for Plant Science Mentoring

description: PlantingScience.org, an online mentoring platform, enlisted the help of the Science Gateways Community Institute to conduct a usability evaluation. The process included workflow analysis, heuristic evaluation, comparative analysis, usability testing, and a final report that together have been instrumental to improving how teachers, scientists, and students use the PlantingScience.org online mentoring platform. Key friction points were identified in website navigation, in matching teams of students with appropriate mentors, and in facilitating teacher front-end registration and password management for student users. In this paper, we discuss the process of evaluation that led to identification of these friction areas. We also discuss how the identified problem areas were redeveloped and include feedback from our users about the new features. Other gateways will gain insight into approaches for evaluating website user experience and then how to use that evaluation to generate website changes that improve usability and reduce administrative support, making it possible to serve a much larger user community.
DOI: 10.6084/m9.figshare.5479405
title: 5_Gene_CDS_quantification-20171006T171448Z-001.zip

description: Gene quantification step
DOI: 10.6084/m9.figshare.5478799
title: trunk flexed walking

description: Force direction patters promote whole body stability in human walking and animal gaits by mimicking a support point above the centre of mass. We show that this holds even for hip-flexed human walking.<br>
DOI: 10.6084/m9.figshare.5478934.v2
title: Redesigning PlantingScience.org: The Role of User Experience Evaluation in Improving a HUBzero Gateway for Plant Science Mentoring

description: PlantingScience.org, an online mentoring platform, enlisted the help of the Science Gateways Community Institute to conduct a usability evaluation. The process included workflow analysis, heuristic evaluation, comparative analysis, usability testing, and a final report that together have been instrumental to improving how teachers, scientists, and students use the PlantingScience.org online mentoring platform. Key friction points were identified in website navigation, in matching teams of students with appropriate mentors, and in facilitating teacher front-end registration and password management for student users. In this paper, we discuss the process of evaluation that led to identification of these friction areas. We also discuss how the identified problem areas were redeveloped and include feedback from our users about the new features. Other gateways will gain insight into approaches for evaluating website user experience and then how to use that evaluation to generate website changes that improve usability and reduce administrative support, making it possible to serve a much larger user community.
DOI: 10.6084/m9.figshare.5479405.v1
title: 5_Gene_CDS_quantification-20171006T171448Z-001.zip

description: Gene quantification step
DOI: 10.6084/m9.figshare.5478799.v1
title: trunk flexed walking

description: Force direction patters promote whole body stability in human walking and animal gaits by mimicking a support point above the centre of mass. We show that this holds even for hip-flexed human walking.<br>
DOI: 10.6084/m9.figshare.5478628
title: Supporting Information for "Metal oxides in surface sediment control nickel bioavailability to benthic macroinvertebrates", ES&T (2017)

description: Site-by-site sediment geochemistry, water chemistry, and benthic invertebrate relative abundance data and associated metadata.
DOI: 10.6084/m9.figshare.5478628.v1
title: Supporting Information for "Metal oxides in surface sediment control nickel bioavailability to benthic macroinvertebrates", ES&T (2017)

description: Site-by-site sediment geochemistry, water chemistry, and benthic invertebrate relative abundance data and associated metadata.
DOI: 10.6084/m9.figshare.5478628.v2
title: Supporting Information for "Metal oxides in surface sediment control nickel bioavailability to benthic macroinvertebrates", ES&T (2017)

description: Site-by-site sediment geochemistry, water chemistry, and benthic invertebrate relative abundance data and associated metadata.
DOI: 10.6084/m9.figshare.5478502
title: Images of 96-well plates with glyicine crystallisation - work of Dr Laurie Little

description: Images of 96-well plates for 2 to 3 runs at 60 mg/ml added NaCl, 90 mg/ml added salt, 150 mg/ml, 200 mg/ml, 250 mg/ml. So when unzipped directory 250mgml_r1 is images for run number 1 at 250 mg/ml salt.Data from Dr Laurie Little<br>
DOI: 10.6084/m9.figshare.5478502.v2
title: Images of 96-well plates with glyicine crystallisation - work of Dr Laurie Little

description: Images of 96-well plates for 2 to 3 runs at 60 mg/ml added NaCl, 90 mg/ml added salt, 150 mg/ml, 200 mg/ml, 250 mg/ml. So when unzipped directory 250mgml_r1 is images for run number 1 at 250 mg/ml salt.Data from Dr Laurie Little<br>
DOI: 10.6084/m9.figshare.5478502.v1
title: Images of 96-well plates with glyicine crystallisation - work of Dr Laurie Little

description: Images of 96-well plates for 2 to 3 runs at 60 mg/ml added NaCl, 90 mg/ml added salt, 150 mg/ml, 200 mg/ml, 250 mg/ml. So when unzipped directory 250mgml_r1 is images for run number 1 at 250 mg/ml salt.Data from Dr Laurie Little<br>
DOI: 10.6084/m9.figshare.5478358
title: Table S5: LA–MC–ICPMS K-feldspar Pb isotopic data. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S5: LA–MC–ICPMS K-feldspar Pb isotopic data for the granites from Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5478361
title: Table S1: XRF whole-rock major (wt%) and trace (µg/g) element data and CIPW norm calculations. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S1: XRF whole-rock major (wt%) and trace (µg/g) element data and CIPW norm calculations from the granites at Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5478349
title: Table S4: LA–MC–ICPMS zircon Lu–Hf isotopic data. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S4: LA–MC–ICPMS zircon Lu–Hf isotopic data for the granites from Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5478352
title: Table S2: Ion-microprobe zircon U–Pb data. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S2: Ion-microprobe zircon U–Pb data for the granites from Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5478355
title: Table S3: Ion-microprobe zircon oxygen isotopic data. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S3: Ion-microprobe zircon oxygen isotopic data for the granites from Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5478358.v1
title: Table S5: LA–MC–ICPMS K-feldspar Pb isotopic data. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S5: LA–MC–ICPMS K-feldspar Pb isotopic data for the granites from Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5478361.v1
title: Table S1: XRF whole-rock major (wt%) and trace (µg/g) element data and CIPW norm calculations. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S1: XRF whole-rock major (wt%) and trace (µg/g) element data and CIPW norm calculations from the granites at Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5478349.v1
title: Table S4: LA–MC–ICPMS zircon Lu–Hf isotopic data. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S4: LA–MC–ICPMS zircon Lu–Hf isotopic data for the granites from Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5478355.v1
title: Table S3: Ion-microprobe zircon oxygen isotopic data. Multiple intrusive phases in the Leinster Batholith, Ireland: geochronology, isotope geochemistry and constraints on the deformation history

description: Table S3: Ion-microprobe zircon oxygen isotopic data for the granites from Glenmacnass Waterfall.
DOI: 10.6084/m9.figshare.5478049
title: Charakterystyka przedsięwzięć finansowanych z funduszy europejskich realizowanych w powiecie chojnickim i Gminie Miejskiej Chojnice w latach 2004–2013

description: W niniejszym artykule dokonano podsumowania zakresu inwestycji zrealizowanych dzięki środkom unijnym w powiecie chojnickim i Gminie Miejskiej Chojnice w latach 2004–2013 (stan realizacji: październik 2015). W obrębie tak przyjętej typologii przeanalizowano 397 projektów za pomocą analizy porównawczej, dzięki czemu oszacowano, iż łączna ich wartość projektów zatwierdzonych do realizacji wyniosła 1,03 mld zł, z czego 597,75 mln zł stanowiło dofinansowanie UE. Wkład budżetu państwa do wskazanych inwestycji to 105,48 mln zł, co oznacza, że 326,88 mln zł to środki stanowiące wkład własny beneficjentów z terenu powiatu chojnickiego. The following article summarizes the scope of the investments made thanks to the EU funds in the Chojnice County and Chojnice Municipality in the years 2004-2013 (state of implementation as at: October 2015). Within such a typology we have analyzed 397 projects through a comparative analysis, and it has been estimated that the total value of projects approved for implementation amounted to 1.03 billion PLN, of which 597.75 million PLN was provided from the EU financial support. The contribution of the state budget to the indicated investment is 105.48 million PLN, which means that 326.88 million PLN is the own contribution of beneficiaries from the Chojnice County.<br>Publisher: A. Finster, J. Knopek (red.)Organization: Urząd Miejski w ChojnicachPublication Date: 2015Publication Name: 25 LAT SAMORZĄDU TERYTORIALNEGO. POLSKA - POMORZE - CHOJNICE