cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.780368
title: (Table 1-3) Total abundance of microorganisms, glucose consumption rate, carbon dioxide assimilation rate, and methane oxidation rate in the water column near the Congo River mouth at Station Vy20-3180W
DOI: 10.1594/pangaea.780369
title: (Table 1-5) Total abundance of microorganisms, glucose consumption rate, carbon dioxide assimilation rate, and methane oxidation rate in the water column near the Congo River mouth at Station Vy20-3184
DOI: 10.1594/pangaea.780370
title: (Table 1-4) Total abundance of microorganisms, glucose consumption rate, carbon dioxide assimilation rate, and methane oxidation rate in the water column near the Congo River mouth at Station Vy20-3182
DOI: 10.1594/pangaea.760910
title: (Table 5) Rates of microbiological processes in cores of bottom sediments from the area of the Spitsbergen (Svalbard) Archipelago

description: 0 = not detected.
DOI: 10.1594/pangaea.833923
title: Methane concentrations and methane oxidation rates from Oct 2010 - March 2012 in the Elbe Estuary, from Hamburg to Cuxhaven, Germany
DOI: 10.1594/pangaea.771138
title: (Table 4.4.1) Abundance of microorganisms, rates of glucose consumption, of CO2 assimilation and methane oxidation in the water column of the Benguela Upwelling area
DOI: 10.1594/pangaea.854975
title: Methane concentration and methane oxidation rates of CTD stations along a hydrocast transect in the central North Sea
DOI: 10.1594/pangaea.764039
title: (Table 5b) Rates of microbial processes in bottom waters of the Kara Sea in September 2007
DOI: 10.1594/pangaea.771455
title: (Table 8.3.14) Rates of microbial processes in deposits covered by bacterial mats in the caldera of the Haakon Mosby mud volcano, Norwegian Sea
DOI: 10.1594/pangaea.780496
title: (Table 1-1) Abundance of microorganisms, glucose consumption rate, carbon dioxide assimilation rate, and methane oxidation rate in the water column of the Benguela upwelling area along 17°S
DOI: 10.1594/pangaea.713464
title: Mud volcanism related investigations of sediment core VKGD272/PC-3
DOI: 10.1594/pangaea.771542
title: (Table 9.2.1) Abundance of microorganisms and rates of methane oxidation and carbon dioxide assimilation in waters of the Guaymas Basin, Gulf of California
DOI: 10.1594/pangaea.761157
title: (Table 3) Intensity of microbiological processes in organic matter cycle in bottom sediments of the Baltic Sea
DOI: 10.1594/pangaea.771133
title: (Table 4.3.4) Rates of microbial processes in bottom sediments of the Batabano Bay
DOI: 10.1594/pangaea.868494
title: Methane concentration and oxidation in the Lena Delta, September 2013

description: The Lena River is one of the biggest Russian rivers draining into the Laptev Sea. Due to predicted increasing temperatures, the permafrost areas surrounding the Lena Delta will melt at increasing rates. With this melting, high amounts of methane will reach the waters of the Lena and the adjacent Laptev Sea. Methane oxidation by methanotrophic bacteria is the only biological way to reduce methane concentrations within the system. However, the polar estuary of the Lena River is a challenging environment for bacteria, with strong fluctuations in salinity and temperature. We determined the activity (tracer method) and the abundance (qPCR) of aerobic methanotrophic bacteria. We described the methanotrophic population with MISA; as well as the methane distribution (head space) and other abiotic parameters in the Lena Delta in September 2013.In 'riverine water' (S &lt;5) we found a median methane concentration of 22 nM, in 'mixed water' (5 &lt; S &lt; 20) the median methane concentration was 19 nM and in 'polar water' (S &gt; 20) a median 28 nM was observed. The Lena River was not the methane source for surface water, and bottom water methane concentrations were mainly influenced by the concentration in surface sediments. However, the methane oxidation rate in riverine and polar water was very similar (0.419 and 0.400 nM/d), but with a higher relative abundance of methanotrophs and a higher 'estimated diversity' with respect to MISA OTUs in the 'rivine water' as compared to 'polar water'. The turnover times of methane ranged from 167 d in 'mixed water', 91 d in 'riverine water' and only 36 d in 'polarwater'. Also the environmental parameters influencing the methane oxidation rate and the methanotrophic population differed between the water masses. Thus we postulate a riverine methanotrophic population limited by sub-optimal temperatures and substrate concentrations and a polar methanotrophic population being well adapted to the cold and methane poor environment, but limited by the nitrogen content. The diffusive methane flux into the atmosphere ranged from 4 -163 µmol m2 d-1 (median 24). For the total methane inventory of the investigated area, the diffusive methane flux was responsible for 8% loss, compared to only 1% of the methane consumed by the methanotrophic bacteria within the system.
description: Physical oceanography and dissolved organic matter from this cruise are published in Dubinenkov et al. (2015)
description: Supplement to: Bussmann, Ingeborg; Hackbusch, Steffen; Schaal, Patrick; Wichels, Antje (2017): Methane distribution and oxidation around the Lena Delta in summer 2013. Biogeosciences, 14(21), 4985-5002
DOI: 10.1594/pangaea.780366
title: (Table 1-1) Total abundance of microorganisms, glucose consumption rate, carbon dioxide assimilation rate, and methane oxidation rate in the water column near the Congo River mouth at Station Vy20-3171
DOI: 10.1594/pangaea.920013
title: Dissolved methane concentrations and oxidation rates in ice cores from the Lena Delta area, 2016-2018
DOI: 10.1594/pangaea.764076
title: (Table 5a) Rates of microbial processes in bottom sediments of the Kara Sea in September 2007
DOI: 10.1594/pangaea.854446
title: Methane and methane oxidation at two time series stations in Lake Constance

description: At a pockmark site with methane ebullition water column parameters were measured and for comparison at a control site not influenced by pockmarks.
DOI: 10.1594/pangaea.804208
title: (Table 6) Rates of biochemical processes in a sedimentary section of the Caspian Sea at Station Rift29-18
DOI: 10.1594/pangaea.770156
title: (Table 3.3.11) Formation and oxidation of metane in bottom sediments from Stations DM49-4404-1 and DM49-4397-1 and methane flux from bottom sediments to water
DOI: 10.1594/pangaea.771540
title: (Table 9.1.4) Rates of biogeochemical processes in Holocene sediments of the Axial Seamount, Juan de Fuca Ridge
DOI: 10.1594/pangaea.785620
title: (Table 2) Microbiological and biogeochemical parameters of the Barents Sea water column in September and October 1998
DOI: 10.1594/pangaea.771454
title: (Table 8.3.13) Integral rates of microbial processes in bottom sediments from the caldera of the Haakon Mosby mud volcano, Norwegian Sea
DOI: 10.1594/pangaea.785892
title: (Table 5) Rates of microbial processes in bottom sediments of the Chukchi Sea
DOI: 10.1594/pangaea.861845
title: (Table 1) Methane concentrations, MOX rates and MOB abundance in arctic aquatic ecosystems of the Lena Delta, Northeast Siberia

description: Large amounts of organic carbon are stored in Arctic permafrost environments, and microbial activity can potentially mineralize this carbon into methane, a potent greenhouse gas. In this study, we assessed the methane budget, the bacterial methane oxidation (MOX) and the underlying environmental controls of arctic lake systems, which represent substantial sources of methane. Five lake systems located on Samoylov Island (Lena Delta, Siberia) and the connected river sites were analyzed using radiotracers to estimate the MOX rates, and molecular biology methods to characterize the abundance and the community composition of methane-oxidizing bacteria (MOB). In contrast to the river, the lake systems had high variation in the methane concentrations, the abundance and composition of the MOB communities, and consequently, the MOX rates. The highest methane concentrations and the highest MOX rates were detected in the lake outlets and in a lake complex in a floodplain area. Though, in all aquatic systems we detected both, Type I and II MOB, in lake systems we observed a higher diversity including MOB, typical of the soil environments. The inoculation of soil MOB into the aquatic systems, resulting from permafrost thawing, might be an additional factor controlling the MOB community composition and potentially methanotrophic capacity.
description: Supplement to: Osudar, Roman; Liebner, Susanne; Alawi, Mashal; Yang, Sizhong; Bussmann, Ingeborg; Wagner, Dirk (2016): Methane turnover and methanotrophic communities in arctic aquatic ecosystems of the Lena Delta, Northeast Siberia. FEMS Microbiology Ecology, fiw116
DOI: 10.1594/pangaea.844010
title: Methane concentration, oxidation rates and abundance of bacteria during Maria S. Merian cruise MSM21/4 at Svalbard seeps in summer 2012
DOI: 10.1594/pangaea.844176
title: Methane concentration, oxidation rates and abundance of bacteria during Poseidon cruise POS419 at Svalbard seeps in summer 2011
DOI: 10.1594/pangaea.886413
title: Physical oceanography during POSEIDON cruise POS516
DOI: 10.1594/pangaea.973175
title: Multibeam bathymetry processed data (Kongsberg EM 122 entire dataset) of RV MARIA S. MERIAN during cruise MSM113

description: The bathymetric and backscatter map were generated from EM122 multibeam data collected during RV Maria S. Merian cruise 113 between 07 and 12 January 2023. The data cover the western flank of La Palma island and were collected as part of the Sub:Palma side user project. The aim of the Sub:Palma project was to investigate deformation along the western flank of La Palma, where Cumbre Vieja volcano erupted in late 2021. The bathymetric data were processed using the software QIMERA and included correcting systematic errors (e.g. applying sound velocity profiles that were recorded during the cruise) and manual editing of the data. After manually deleting single beams with the 3D slice editor, the data were gridded to 60 x 60 m. The processed multibeam data were loaded into the software FMGT and a backscatter map (mosaic size 40 m) was created.
DOI: 10.1594/pangaea.973186
title: Ozone measurements from station Tamanrasset (2024-09)
DOI: 10.1594/pangaea.973187
title: Radiosonde measurements from station Tamanrasset (2024-09)

description: Start location: Tamanrasset; Distance from radiation site: 10 km
DOI: 10.1594/pangaea.973188
title: Meteorological synoptical observations from station Tamanrasset (2024-09)
DOI: 10.11578/1515037
title: 2014 Hydropower Market Report Data
DOI: 10.21951/1514914
title: 2017 Hydropower Market Report Highlights
DOI: 10.21951/retired_fy20/1608430
title: U.S. Hydropower Retired Facilities FY20
DOI: 10.15468/dl.r2dw79
title: Occurrence Download

description: A dataset containing 2942 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Balanophora J.R.Forst. & G.Forst."
 ]
}

 The dataset includes 2942 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029345-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.20350/digitalcsic/16683
title: Qualitative assessment of AHL secretion by AV-T variants of WT A. baumannii AB5075, deleted ΔcavA mutant and ΔcavA+cavA complemented strain [Dataset]

description: Cultures of each strain were spot plated on a soft agar mixed with A. tumefaciens traG-lacZ biosensor strain and supplemented with X-Gal and IPTG. The blue halo indicates AHL production by A. baumannii which triggers the cleavage of X-gal by the A. tumefaciens biosensor strain. Empty miniTn7 controls are presented in S8 Fig.
DOI: 10.15468/dl.w7zshr
title: Occurrence Download

description: A dataset listing the 32 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Base de datos ambientales, oceanográficos y meteorológicos generados en proyectos de exploración de hidrocarburos 2007-2017"
 ]
}

 The dataset's 32 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029344-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8sw4f5
title: Occurrence Download

description: A dataset containing 12281 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Martes americana (Turton, 1806))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12281 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029349-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14207729
title: JASPAR TFBS tracks

description: We retrieved the genome browser track file from JASPAR, which stores all known TF binding sites of each TF. A p-value score was provided in JASPAR.
DOI: 10.5281/zenodo.14207730
title: JASPAR TFBS tracks

description: We retrieved the genome browser track file from JASPAR, which stores all known TF binding sites of each TF. A p-value score was provided in JASPAR.
DOI: 10.15468/dl.kwuhas
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Alpinia officinarum Hance",
 "Year 1000-2024"
 ]
}

 The dataset includes 60 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029353-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pp99x2
title: Occurrence Download

description: A dataset containing 157012 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Camelus bactrianus Linnaeus, 1758, Camelus dromedarius Linnaeus, 1758, Addax nasomaculatus (Blainville, 1816), Antidorcas marsupialis (Zimmermann, 1780), Axis porcinus (Zimmermann, 1780), Babyrousa celebensis (Deninger, 1909), Beatragus hunteri (P.L.Sclater, 1889), Bos grunniens Linnaeus, 1766, Bubalus depressicornis (C.H.Smith, 1827), Budorcas taxicolor Hodgson, 1850, Capra falconeri (Wagner, 1839), Capra ibex Linnaeus, 1758, Capricornis sumatraensis (Bechstein, 1799), Catagonus wagneri (Rusconi, 1930), Cephalophus natalensis A.Smith, 1834, Eudorcas thomsonii (Günther, 1884), Hexaprotodon liberiensis (Morton, 1849), Kobus leche Gray, 1850, Litocranius walleri (Brooke, 1879), Muntiacus crinifrons (Sclater, 1885), Muntiacus gongshanensis Ma, 1990, Nanger dama (Pallas, 1766), Nanger granti (Brooke, 1872), Neotragus pygmaeus (Linnaeus, 1758), Hemitragus hylocrius (Ogilby, 1838), Okapia johnstoni (P.L.Sclater, 1901), Oreamnos americanus (Blainville, 1816), Oryx gazella (Linnaeus, 1758), Ovibos moschatus (Zimmermann, 1780), Ovis nivicola Eschscholtz, 1829, Pantholops hodgsonii (Abel, 1826), Philantomba maxwellii (C.H.Smith, 1827), Procapra przewalskii (Büchner, 1891), Pseudois nayaur (Hodgson, 1833), Rusa alfredi (Sclater, 1870), Saiga tatarica (Linnaeus, 1766), Sus cebifrons Heude, 1888, Tragelaphus buxtoni (Lydekker, 1910), Tragelaphus imberbis (Blyth, 1869), Tragulus javanicus (Osbeck, 1765))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 157012 records from 274 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029346-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3pjnhg
title: Occurrence Download

description: A dataset containing 157012 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Camelus bactrianus Linnaeus, 1758, Camelus dromedarius Linnaeus, 1758, Addax nasomaculatus (Blainville, 1816), Antidorcas marsupialis (Zimmermann, 1780), Axis porcinus (Zimmermann, 1780), Babyrousa celebensis (Deninger, 1909), Beatragus hunteri (P.L.Sclater, 1889), Bos grunniens Linnaeus, 1766, Bubalus depressicornis (C.H.Smith, 1827), Budorcas taxicolor Hodgson, 1850, Capra falconeri (Wagner, 1839), Capra ibex Linnaeus, 1758, Capricornis sumatraensis (Bechstein, 1799), Catagonus wagneri (Rusconi, 1930), Cephalophus natalensis A.Smith, 1834, Eudorcas thomsonii (Günther, 1884), Hexaprotodon liberiensis (Morton, 1849), Kobus leche Gray, 1850, Litocranius walleri (Brooke, 1879), Muntiacus crinifrons (Sclater, 1885), Muntiacus gongshanensis Ma, 1990, Nanger dama (Pallas, 1766), Nanger granti (Brooke, 1872), Neotragus pygmaeus (Linnaeus, 1758), Hemitragus hylocrius (Ogilby, 1838), Okapia johnstoni (P.L.Sclater, 1901), Oreamnos americanus (Blainville, 1816), Oryx gazella (Linnaeus, 1758), Ovibos moschatus (Zimmermann, 1780), Ovis nivicola Eschscholtz, 1829, Pantholops hodgsonii (Abel, 1826), Philantomba maxwellii (C.H.Smith, 1827), Procapra przewalskii (Büchner, 1891), Pseudois nayaur (Hodgson, 1833), Rusa alfredi (Sclater, 1870), Saiga tatarica (Linnaeus, 1766), Sus cebifrons Heude, 1888, Tragelaphus buxtoni (Lydekker, 1910), Tragelaphus imberbis (Blyth, 1869), Tragulus javanicus (Osbeck, 1765))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 157012 records from 274 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029348-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.256938
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "TaxonKey is Clerodendrum intermedium Cham."
 ]
}

 The dataset includes 139 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029354-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14010798
title: A High-quality Genome Assembly of Pseudocydonia sinensis Uncovers Uique Phenylpropanoid Pathways

description: Filename    Description    FormatPseudocydonia_sinensis.cds.fasta    Coding sequence file, with each entry representing the nucleotide sequence of a gene.    FASTAPseudocydonia_sinensis.prot.fasta    Protein sequence file, with each entry corresponding to the amino acid sequence of a transcript.    FASTAPseudocydonia_sinensis.annotation.gff3    Genome feature annotation file, describing the locations of genes, exons, and other genomic features.    GFF3Pseudocydonia_sinensis.genome.fasta    Genome sequence file, providing the complete nucleotide sequence of the genome.    FASTAARK.pep.fa    Protein sequence file containing the deduced ancestral protein sequences for the Rosaceae karyotype.     FASTAARK.gff    Simplified GFF file formatted specifically for WGDI toolkit. Contains seven columns: chromosome, gene ID, start, end, strand, order, and gene ID. This file represents the positional and structural information of reconstructed ancestral genes in the Ancestral Rosaceae Karyotype.    GFF3(7-columns)
DOI: 10.5281/zenodo.14010799
title: A High-quality Genome Assembly of Pseudocydonia sinensis Uncovers Uique Phenylpropanoid Pathways

description: Filename    Description    FormatPseudocydonia_sinensis.cds.fasta    Coding sequence file, with each entry representing the nucleotide sequence of a gene.    FASTAPseudocydonia_sinensis.prot.fasta    Protein sequence file, with each entry corresponding to the amino acid sequence of a transcript.    FASTAPseudocydonia_sinensis.annotation.gff3    Genome feature annotation file, describing the locations of genes, exons, and other genomic features.    GFF3Pseudocydonia_sinensis.genome.fasta    Genome sequence file, providing the complete nucleotide sequence of the genome.    FASTAARK.pep.fa    Protein sequence file containing the deduced ancestral protein sequences for the Rosaceae karyotype.     FASTAARK.gff    Simplified GFF file formatted specifically for WGDI toolkit. Contains seven columns: chromosome, gene ID, start, end, strand, order, and gene ID. This file represents the positional and structural information of reconstructed ancestral genes in the Ancestral Rosaceae Karyotype.    GFF3(7-columns)
DOI: 10.5281/zenodo.14207744
title: Uma Teoria da Consciência como Quarta Dimensão: Proposta de uma Interação Entre Consciência e Espaço-Tempo

description: Resumo:

 

Esta teoria propõe que a consciência humana pode ser considerada uma manifestação da quarta dimensão, interagindo com o espaço-tempo de formas ainda não completamente compreendidas. Acreditamos que a consciência não é apenas um fenômeno biológico ou psicológico, mas uma interação complexa com o espaço-tempo, possivelmente afetando e sendo afetada por ele de maneiras que desafiam a física clássica e quântica. A teoria sugere uma modelagem matemática que visa descrever essas interações e um experimento simples para testar esta hipótese, sem a necessidade de tecnologia avançada.
DOI: 10.5281/zenodo.14207745
title: Uma Teoria da Consciência como Quarta Dimensão: Proposta de uma Interação Entre Consciência e Espaço-Tempo

description: Resumo:

 

Esta teoria propõe que a consciência humana pode ser considerada uma manifestação da quarta dimensão, interagindo com o espaço-tempo de formas ainda não completamente compreendidas. Acreditamos que a consciência não é apenas um fenômeno biológico ou psicológico, mas uma interação complexa com o espaço-tempo, possivelmente afetando e sendo afetada por ele de maneiras que desafiam a física clássica e quântica. A teoria sugere uma modelagem matemática que visa descrever essas interações e um experimento simples para testar esta hipótese, sem a necessidade de tecnologia avançada.
DOI: 10.15468/dl.3pwwyk
title: Occurrence Download

description: A dataset containing 837383 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (North America, South America)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Ramphastos ambiguus Swainson, 1823, Ramphastos ariel Vigors, 1826, Ramphastos brevis Meyer de Schauensee, 1945, Ramphastos cassicus Boddaert, 1783, Ramphastos citreolaemus Gould, 1844, Ramphastos dicolorus Linnaeus, 1766, Ramphastos picatus Linnaeus, 1758, Ramphastos spec Linnaeus, 1758, Ramphastos sulfuratus R.Lesson, 1830, Ramphastos toco P.L.S.Müller, 1776, Ramphastos tucanus Linnaeus, 1758, Ramphastos vitellinus M.H.K.Lichtenstein, 1823)",
 "Year 1000-2024"
 ]
}

 The dataset includes 837383 records from 354 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029355-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3egxx
title: Occurrence Download

description: A dataset containing 8862 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 8862 records from 271 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029356-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.