cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7693088
title: Additional file 1: of Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum

description: Table S1. PacBio assemblies of each strain. (XLXS 13.9kb)
DOI: 10.6084/m9.figshare.7693088.v1
title: Additional file 1: of Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum

description: Table S1. PacBio assemblies of each strain. (XLXS 13.9kb)
DOI: 10.6084/m9.figshare.7693094
title: Additional file 20: of Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum

description: Table S8. Selection in cyclosporin synthase. (simA) gene (XLSX 15.2 kb)
DOI: 10.6084/m9.figshare.7693094.v1
title: Additional file 20: of Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum

description: Table S8. Selection in cyclosporin synthase. (simA) gene (XLSX 15.2 kb)
DOI: 10.6084/m9.figshare.7693115
title: Additional file 4: of Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum

description: Table S2. Large inversions identified with NUCmer. (XLXS 21.8 kb)
DOI: 10.6084/m9.figshare.7693115.v1
title: Additional file 4: of Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum

description: Table S2. Large inversions identified with NUCmer. (XLXS 21.8 kb)
DOI: 10.6084/m9.figshare.7693139
title: Additional file 9: of Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum

description: Table S4. Secondary metabolite clusters found in six T. inflatum strains. (XLXS 17.5 kb)
DOI: 10.6084/m9.figshare.7693139.v1
title: Additional file 9: of Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum

description: Table S4. Secondary metabolite clusters found in six T. inflatum strains. (XLXS 17.5 kb)
DOI: 10.6084/m9.figshare.11887446
title: Additional file 1 of Dynamic changes in membrane lipid composition of leaves of winter wheat seedlings in response to PEG-induced water stress

description: Additional file 1. Data of glycerolipids, photosynthesis parameters, membrane ion leakage, DBI of wheat leaves during water stress, and the correlation between membrane ion leakage and phospholipids, photosynthesis rate and galactolipids.
DOI: 10.6084/m9.figshare.11887446.v1
title: Additional file 1 of Dynamic changes in membrane lipid composition of leaves of winter wheat seedlings in response to PEG-induced water stress

description: Additional file 1. Data of glycerolipids, photosynthesis parameters, membrane ion leakage, DBI of wheat leaves during water stress, and the correlation between membrane ion leakage and phospholipids, photosynthesis rate and galactolipids.
DOI: 10.6084/m9.figshare.11887518
title: Additional file 1 of A lithium-containing biomaterial promotes chondrogenic differentiation of induced pluripotent stem cells with reducing hypertrophy

description: Additional file 1:. Table S1. Designations, sequences, and the sizes of RT- PCR amplicons.
DOI: 10.6084/m9.figshare.11887518.v1
title: Additional file 1 of A lithium-containing biomaterial promotes chondrogenic differentiation of induced pluripotent stem cells with reducing hypertrophy

description: Additional file 1:. Table S1. Designations, sequences, and the sizes of RT- PCR amplicons.
DOI: 10.6084/m9.figshare.10314671
title: MOESM1 of A high-throughput screening identifies histone deacetylase inhibitors as therapeutic agents against medulloblastoma

description: Additional file 1: Data S1. Dose response curves of Daoy cells treated with 125 compounds.
DOI: 10.6084/m9.figshare.10314671.v1
title: MOESM1 of A high-throughput screening identifies histone deacetylase inhibitors as therapeutic agents against medulloblastoma

description: Additional file 1: Data S1. Dose response curves of Daoy cells treated with 125 compounds.
DOI: 10.6084/m9.figshare.9790385
title: Additional file 2: of GhFAD2â 3 is required for anther development in Gossypium hirsutum

description: Raw data. This file contains raw data with individual data points or replicates for Figs. 1, 5, 6, and 7. (XLS 126 kb)
DOI: 10.6084/m9.figshare.9790385.v1
title: Additional file 2: of GhFAD2â 3 is required for anther development in Gossypium hirsutum

description: Raw data. This file contains raw data with individual data points or replicates for Figs. 1, 5, 6, and 7. (XLS 126 kb)
DOI: 10.6084/m9.figshare.15033175
title: Additional file 1 of Abnormal methylation characteristics predict chemoresistance and poor prognosis in advanced high-grade serous ovarian cancer

description: Additional file 1. Table S1. Amplification primers and sequencing primers for Pyrosequencing. Table S2. Primers sequence for QRT-PCR. Table S3. Pathway analysis of different methylation sites between sensitive and resistant patients in KEGG (epithelial ovarian cancer). Table S4. Go analysis of different methylation sites in sensitive and resistant patients (epithelial ovarian cancer). Table S5. Correlation between candidate cpgs methylation (advanced HGSOC). Table S6. Correlation between candidate genes expression (advanced HGSOC).
DOI: 10.6084/m9.figshare.15033175.v1
title: Additional file 1 of Abnormal methylation characteristics predict chemoresistance and poor prognosis in advanced high-grade serous ovarian cancer

description: Additional file 1. Table S1. Amplification primers and sequencing primers for Pyrosequencing. Table S2. Primers sequence for QRT-PCR. Table S3. Pathway analysis of different methylation sites between sensitive and resistant patients in KEGG (epithelial ovarian cancer). Table S4. Go analysis of different methylation sites in sensitive and resistant patients (epithelial ovarian cancer). Table S5. Correlation between candidate cpgs methylation (advanced HGSOC). Table S6. Correlation between candidate genes expression (advanced HGSOC).
DOI: 10.6084/m9.figshare.10314695
title: MOESM2 of Treatment of the bone marrow stromal stem cell supernatant by nasal administrationâ€”a new approach to EAE therapy

description: Additional file 2: Table S1. Antibody used in the flow cytometry.
DOI: 10.6084/m9.figshare.10314695.v1
title: MOESM2 of Treatment of the bone marrow stromal stem cell supernatant by nasal administrationâ€”a new approach to EAE therapy

description: Additional file 2: Table S1. Antibody used in the flow cytometry.
DOI: 10.6084/m9.figshare.15033205
title: Additional file 2 of Variability of multi-omics profiles in a population-based child cohort

description: Additional file 2. Results of the variance explained by each explanatory variable in each omics feature. This file contains, for each omics layer (one per sheet), the percentage of variance explained by each explanatory variable in each omics feature.
DOI: 10.6084/m9.figshare.15033205.v1
title: Additional file 2 of Variability of multi-omics profiles in a population-based child cohort

description: Additional file 2. Results of the variance explained by each explanatory variable in each omics feature. This file contains, for each omics layer (one per sheet), the percentage of variance explained by each explanatory variable in each omics feature.
DOI: 10.6084/m9.figshare.8217542
title: Additional file 1: of Monitoring progress in reducing maternal mortality using verbal autopsy methods in vital registration systems: what can we conclude about specific causes of maternal death?

description: Population Health Metrics Research Consortium (PHMRC) proportion of deaths positively endorsed (i.e., answered â yesâ ) for key symptoms for maternal death by cause (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8217542.v1
title: Additional file 1: of Monitoring progress in reducing maternal mortality using verbal autopsy methods in vital registration systems: what can we conclude about specific causes of maternal death?

description: Population Health Metrics Research Consortium (PHMRC) proportion of deaths positively endorsed (i.e., answered â yesâ ) for key symptoms for maternal death by cause (XLSX 10 kb)
DOI: 10.6084/m9.figshare.10314707
title: MOESM3 of Treatment of the bone marrow stromal stem cell supernatant by nasal administrationâ€”a new approach to EAE therapy

description: Additional file 3: Table S2. BMSC supernatant Ameliorated EAE Clinical Course.
DOI: 10.6084/m9.figshare.10314707.v1
title: MOESM3 of Treatment of the bone marrow stromal stem cell supernatant by nasal administrationâ€”a new approach to EAE therapy

description: Additional file 3: Table S2. BMSC supernatant Ameliorated EAE Clinical Course.
DOI: 10.6084/m9.figshare.15033298.v1
title: Additional file 2 of Whole-exome sequencing reveals POLR3B variants associated with progeria-related Wiedemann-Rautenstrauch syndrome

description: Additional file 2.
DOI: 10.6084/m9.figshare.15033298
title: Additional file 2 of Whole-exome sequencing reveals POLR3B variants associated with progeria-related Wiedemann-Rautenstrauch syndrome

description: Additional file 2.
DOI: 10.6084/m9.figshare.10314719
title: MOESM10 of Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum

description: Additional file 10: Table S2. BUSCO analysis of transcriptome assembly in Gynostemma pentaphyllum.
DOI: 10.6084/m9.figshare.10314719.v1
title: MOESM10 of Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum

description: Additional file 10: Table S2. BUSCO analysis of transcriptome assembly in Gynostemma pentaphyllum.
DOI: 10.6084/m9.figshare.9790436
title: Additional file 3: of Identification of microRNA in Houttuynia cordata Thunb and prediction of cross kingdom functions

description: Table S6. Potential target genes of miRNAs. (XLSX 304 kb)
DOI: 10.5281/zenodo.10672868
title: IODP Expedition 393 X-ray diffraction (XRD)

description: X-ray diffraction (XRD) is used to identify minerals and their proportions in sediment or hard rock sample powders on a Bruker AXS D4 Endeavor X-ray diffractometer. Results are returned as diffractograms in a viewable format (either PDF or PNG).
DOI: 10.5281/zenodo.10672869
title: IODP Expedition 393 X-ray diffraction (XRD)

description: X-ray diffraction (XRD) is used to identify minerals and their proportions in sediment or hard rock sample powders on a Bruker AXS D4 Endeavor X-ray diffractometer. Results are returned as diffractograms in a viewable format (either PDF or PNG).
DOI: 10.6084/m9.figshare.9790436.v1
title: Additional file 3: of Identification of microRNA in Houttuynia cordata Thunb and prediction of cross kingdom functions

description: Table S6. Potential target genes of miRNAs. (XLSX 304 kb)
DOI: 10.6084/m9.figshare.10314725
title: MOESM11 of Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum

description: Additional file 11: Table S3. Detailed list of differentially expressed genes in during aerial stem-to-rhizome transition Gynostemma pentaphyllum.
DOI: 10.6084/m9.figshare.10314725.v1
title: MOESM11 of Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum

description: Additional file 11: Table S3. Detailed list of differentially expressed genes in during aerial stem-to-rhizome transition Gynostemma pentaphyllum.
DOI: 10.6084/m9.figshare.8217572.v1
title: Additional file 1: of A genomic atlas of systemic interindividual epigenetic variation in humans

description: Supplementary Tables S1, S3-S19. (XLS 26942 kb)
DOI: 10.6084/m9.figshare.8217572
title: Additional file 1: of A genomic atlas of systemic interindividual epigenetic variation in humans

description: Supplementary Tables S1, S3-S19. (XLS 26942 kb)
DOI: 10.6084/m9.figshare.8217575
title: Additional file 2: of A genomic atlas of systemic interindividual epigenetic variation in humans

description: Supplementary Table S2. (CSV 31408 kb)
DOI: 10.6084/m9.figshare.8217575.v1
title: Additional file 2: of A genomic atlas of systemic interindividual epigenetic variation in humans

description: Supplementary Table S2. (CSV 31408 kb)
DOI: 10.6084/m9.figshare.9790442
title: Additional file 4: of Identification of microRNA in Houttuynia cordata Thunb and prediction of cross kingdom functions

description: Table S7. The top 30 GO enrichment results and top 30 KEGG statistics. (XLSX 705 kb)
DOI: 10.6084/m9.figshare.9790442.v1
title: Additional file 4: of Identification of microRNA in Houttuynia cordata Thunb and prediction of cross kingdom functions

description: Table S7. The top 30 GO enrichment results and top 30 KEGG statistics. (XLSX 705 kb)
DOI: 10.6084/m9.figshare.10314734
title: MOESM12 of Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum

description: Additional file 12: Table S4. Classification of small RNAs.
DOI: 10.6084/m9.figshare.10314734.v1
title: MOESM12 of Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum

description: Additional file 12: Table S4. Classification of small RNAs.
DOI: 10.6084/m9.figshare.10314740
title: MOESM13 of Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum

description: Additional file 13: Table S5. Detailed information of known and novel miRNAs in Gynostemma pentaphyllum.
DOI: 10.6084/m9.figshare.10314740.v1
title: MOESM13 of Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum

description: Additional file 13: Table S5. Detailed information of known and novel miRNAs in Gynostemma pentaphyllum.
DOI: 10.6084/m9.figshare.10314749
title: MOESM14 of Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum

description: Additional file 14: Table S6. Predicted targets of differentially expressed miRNAs during the aerial stem-to-rhizome transition of Gynostemma pentaphyllum.
DOI: 10.6084/m9.figshare.10314749.v1
title: MOESM14 of Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum

description: Additional file 14: Table S6. Predicted targets of differentially expressed miRNAs during the aerial stem-to-rhizome transition of Gynostemma pentaphyllum.
DOI: 10.6084/m9.figshare.10314755
title: MOESM15 of Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum

description: Additional file 15: Table S7. Primers used for quantitative RT-PCR in the study.
DOI: 10.6084/m9.figshare.10314755.v1
title: MOESM15 of Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum

description: Additional file 15: Table S7. Primers used for quantitative RT-PCR in the study.
DOI: 10.6084/m9.figshare.10314809
title: MOESM9 of Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum

description: Additional file 9: Table S1. Length distribution of assembled transcripts and unigenes.
DOI: 10.6084/m9.figshare.10314809.v1
title: MOESM9 of Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum

description: Additional file 9: Table S1. Length distribution of assembled transcripts and unigenes.
DOI: 10.6084/m9.figshare.16606293.v1
title: A novel immune-related genes signature after bariatric surgery is histologically associated with non-alcoholic fatty liver disease

description: Increasing evidence shows that immune-related genes (IRGs) play an important role in bariatric surgery (BS). We identified differentially expressed immune-related genes (DEIRGs) of adipose tissue after BS by analysing the two expression profiles of GEO (GSE59034 and GSE29409). Subsequently, enrichment analysis, GSEA and PPI networks were examined to identify the hub IRGs and related pathways. The performance of the signature was evaluated by area under the curve (AUC) of the receiver operating characteristic (ROC). CIBERSORT algorithm was used to evaluate the relative abundance of infiltrated immune cells.42 DEIRGs were found between the GSE59034 and GSE29409 datasets. The AUC of the signature was 0.904 and 0.865 in the GSE58979 and GSE48452, respectively. Interestingly, the signature also showed good performance in diagnosing non-alcoholic fatty liver disease (NAFLD) (AUC was 0.834 and 0.800, respectively). The number of neutrophils, macrophages M2, macrophages M0 and dendritic cells activated decreased significantly. After BS, the infiltration of T cells regulatory, monocytes, mast cells resting and plasma cells in adipose tissue increased. The novel proposed IRGs signature reveals the underlying immune mechanism of BS and is a promising biomarker for distinguishing the severity of NAFLD. This will provide new insights into strategies for treating obesity and NAFLD.
DOI: 10.6084/m9.figshare.9790559
title: Additional file 1: of Benchmarking variant identification tools for plant diversity discovery

description: Table S1. Summary of 82 tomato accession (XLSX 53 kb)
DOI: 10.6084/m9.figshare.9790559.v1
title: Additional file 1: of Benchmarking variant identification tools for plant diversity discovery

description: Table S1. Summary of 82 tomato accession (XLSX 53 kb)
DOI: 10.6084/m9.figshare.9790568
title: Additional file 2: of Benchmarking variant identification tools for plant diversity discovery

description: Table S2. Summary of alignment time (XLSX 39 kb)
DOI: 10.6084/m9.figshare.9790568.v1
title: Additional file 2: of Benchmarking variant identification tools for plant diversity discovery

description: Table S2. Summary of alignment time (XLSX 39 kb)
DOI: 10.6084/m9.figshare.9790574
title: Additional file 3: of Benchmarking variant identification tools for plant diversity discovery

description: Table S3. Summary of synteny analysis (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9790574.v1
title: Additional file 3: of Benchmarking variant identification tools for plant diversity discovery

description: Table S3. Summary of synteny analysis (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9790577
title: Additional file 4 of Benchmarking variant identification tools for plant diversity discovery

description: Table S4. Functional annotation summary of variants identified by different variant calling programs (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9790577.v1
title: Additional file 4 of Benchmarking variant identification tools for plant diversity discovery

description: Table S4. Functional annotation summary of variants identified by different variant calling programs (XLSX 9 kb)
DOI: 10.5281/zenodo.10672854
title: IODP Expedition 393 Thin section images

description: Hard rock and sediment thin section images were acquired using either the JRSO-developed Petrographic Image Capture and Archival Tool (PICAT) imager or (rarely) an upright microscope and a digital camera. Sample images are acquired in unpolarized, polarized, and/or cross-polarized light. Image files are presented compressed by hole.
DOI: 10.5281/zenodo.10672855
title: IODP Expedition 393 Thin section images

description: Hard rock and sediment thin section images were acquired using either the JRSO-developed Petrographic Image Capture and Archival Tool (PICAT) imager or (rarely) an upright microscope and a digital camera. Sample images are acquired in unpolarized, polarized, and/or cross-polarized light. Image files are presented compressed by hole.
DOI: 10.6084/m9.figshare.9790580
title: Additional file 5: of Benchmarking variant identification tools for plant diversity discovery

description: Table S5. Summary of different variant filtering results (XLSX 33 kb)
DOI: 10.6084/m9.figshare.9790580.v1
title: Additional file 5: of Benchmarking variant identification tools for plant diversity discovery

description: Table S5. Summary of different variant filtering results (XLSX 33 kb)
DOI: 10.6084/m9.figshare.9790583
title: Additional file 1: of Construction of a high-resolution genetic map and identification of quantitative trait loci for salt tolerance in jute (Corchous spp.)

description: Table S1. Sequencing results information statistics (XLSX 8 kb)
DOI: 10.6084/m9.figshare.9790583.v1
title: Additional file 1: of Construction of a high-resolution genetic map and identification of quantitative trait loci for salt tolerance in jute (Corchous spp.)

description: Table S1. Sequencing results information statistics (XLSX 8 kb)
DOI: 10.6084/m9.figshare.12936311
title: Additional file 2 of Automated classification of protein subcellular localization in immunohistochemistry images to reveal biomarkers in colon cancer

description: Additional file 2: Table S5. Predicted subcellular locations and P values of proteins in the literature biomarker dataset and the human protein atlas biomarker dataset.
DOI: 10.6084/m9.figshare.12936311.v1
title: Additional file 2 of Automated classification of protein subcellular localization in immunohistochemistry images to reveal biomarkers in colon cancer

description: Additional file 2: Table S5. Predicted subcellular locations and P values of proteins in the literature biomarker dataset and the human protein atlas biomarker dataset.
DOI: 10.5281/zenodo.10680453
title: GPR - Augmented
DOI: 10.5281/zenodo.10680454
title: GPR - Augmented
DOI: 10.6084/m9.figshare.9790589
title: Additional file 2: of Construction of a high-resolution genetic map and identification of quantitative trait loci for salt tolerance in jute (Corchous spp.)

description: Table S2. Information of 4839 SNPs of effective markers successfully assigned to unique genetic positions (XLSX 3232 kb)
DOI: 10.6084/m9.figshare.9790589.v1
title: Additional file 2: of Construction of a high-resolution genetic map and identification of quantitative trait loci for salt tolerance in jute (Corchous spp.)

description: Table S2. Information of 4839 SNPs of effective markers successfully assigned to unique genetic positions (XLSX 3232 kb)
DOI: 10.6084/m9.figshare.10314923
title: MOESM1 of Transcriptional insights into key genes and pathways controlling muscle lipid metabolism in broiler chickens

description: Additional file 1. The screened DEGs between HTG and LTG group.
DOI: 10.6084/m9.figshare.10314923.v1
title: MOESM1 of Transcriptional insights into key genes and pathways controlling muscle lipid metabolism in broiler chickens

description: Additional file 1. The screened DEGs between HTG and LTG group.
DOI: 10.6084/m9.figshare.10314926
title: MOESM2 of Transcriptional insights into key genes and pathways controlling muscle lipid metabolism in broiler chickens

description: Additional file 2. The 59 DEGs related to lipid metabolism.
DOI: 10.5281/zenodo.10672852
title: IODP Expedition 393 Thermal conductivity

description: Thermal conductivity was measured using the heated needle method in either full-space needle configuration (soft/saturated sediments) or half-space needle configuration (harder materials) of a TeKa Berlin TK-04 thermal conductivity meter. Heat is applied to the sample and then thermal equilibrium is sought. The heating and equilibration curve is reduced to derive the thermal conductivity value. Raw data are stored if a user wishes to do off-line or postexpedition reduction.