cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14794056
title: RDP database .qza file

description: RDP database .qza file for use with Qiime2's feature-classifier command. Created from https://figshare.com/s/7881ff1724948e513162 & https://figshare.com/s/86d9b343729e4c67ea08See https://forum.qiime2.org/t/rdp-reference-database-in-qiime2-format/15146/10 for more.<br>
DOI: 10.6084/m9.figshare.14794089
title: RDP taxonomy .qza file

description: RDP taxonomy .qza file for use with Qiime2's feature-classifier command. Created from https://figshare.com/s/7881ff1724948e513162 & https://figshare.com/s/86d9b343729e4c67ea08See https://forum.qiime2.org/t/rdp-reference-database-in-qiime2-format/15146/10 for more.
DOI: 10.5066/p966qmas
title: National Assessment of Oil and Gas Project - Raton Basin-Sierra Grande Uplift Province (041) Total Petroleum Systems

description: The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the assessment of undiscovered oil and gas resources. The Total Petroleum System is shown here as a geographic boundary defined and mapped by the geologist responsible for the province and incorporates not only the set of known or postulated oil and (or) gas accumulations, but also the geologic interpretation of the essential elements and processes within the petroleum system that relate to source, generation, migration, accumulation, and trapping of the discovered and undiscovered petroleum resource(s).
DOI: 10.5281/zenodo.4968578
title: Covid-Graph-Repository: Graph Dumps and Topology Results

description: Paper title: Optimized Construction of Covid-19 Datasets for GraphAnalytics This repository contains a number of Covid-19 graph database dumps.<br> - Graph-Dumps/1-Dimensional-Graph.dump: This includes metamodel transformation, node compression and binning.<br> - Graph-Dumps/2-Edge-Compression-Graph.dump: This is a Dimensional Graph with the added feature of Edge Compression.<br> - Graph-Dumps/3-Hyper-Edge-Compression-Graph.dump: This is an Edge Compression Graph with the added feature of HyperEdge Compression<br> - Graph-Dumps/Rolling-Window-Graphs/Dimensional-Compression-Rolling-Window-Graph.dump<br> - Graph-Dumps/Rolling-Window-Graphs/Edge-Compression-Rolling-Window-Graph.dump<br> - Graph-Dumps/Rolling-Window-Graphs/Hyper-Edge-Compression-Rolling-Window-Graph.dump Topology-results, including complete set of topological results of the Hyperedge Compression graph, including closeness, betweenness, Louvain and modularity optimization:<br> - Topology-Results/Covid10Jun_HyperEdge_Metrics-Sorted-By-Betweenness.xlsx<br> - Topology-Results/Covid10Jun_HyperEdge_Metrics-Sorted-By-Closeness.xlsx<br> - Topology-Results/Covid10Jun_Modularity-Louvain_Metrics.xlsx<br> - Topology-Results/Covid10Jun_Modularity-Optimized_Metrics.xlsx
DOI: 10.5281/zenodo.4959400
title: Covid-Graph-Repository: Graph Dumps and Topology Results

description: Paper title: Optimized Construction of Covid-19 Datasets for GraphAnalytics This repository contains a number of Covid-19 graph database dumps.<br> - Graph-Dumps/1-Dimensional-Graph.dump: This includes metamodel transformation, node compression and binning.<br> - Graph-Dumps/2-Edge-Compression-Graph.dump: This is a Dimensional Graph with the added feature of Edge Compression.<br> - Graph-Dumps/3-Hyper-Edge-Compression-Graph.dump: This is an Edge Compression Graph with the added feature of HyperEdge Compression<br> - Graph-Dumps/Rolling-Window-Graphs/Dimensional-Compression-Rolling-Window-Graph.dump<br> - Graph-Dumps/Rolling-Window-Graphs/Edge-Compression-Rolling-Window-Graph.dump<br> - Graph-Dumps/Rolling-Window-Graphs/Hyper-Edge-Compression-Rolling-Window-Graph.dump Topology-results, including complete set of topological results of the Hyperedge Compression graph, including closeness, betweenness, Louvain and modularity optimization:<br> - Topology-Results/Covid10Jun_HyperEdge_Metrics-Sorted-By-Betweenness.xlsx<br> - Topology-Results/Covid10Jun_HyperEdge_Metrics-Sorted-By-Closeness.xlsx<br> - Topology-Results/Covid10Jun_Modularity-Louvain_Metrics.xlsx<br> - Topology-Results/Covid10Jun_Modularity-Optimized_Metrics.xlsx
DOI: 10.5066/p9ki3lcm
title: National Assessment of Oil and Gas Project - Black Warrior Basin Province (065) Total Petroleum Systems

description: The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the assessment of undiscovered oil and gas resources. The Total Petroleum System is shown here as a geographic boundary defined and mapped by the geologist responsible for the province and incorporates not only the set of known or postulated oil and (or) gas accumulations, but also the geologic interpretation of the essential elements and processes within the petroleum system that relate to source, generation, migration, accumulation, and trapping of the discovered and undiscovered petroleum resource(s).
DOI: 10.5281/zenodo.4943868
title: Dataset of Bnet values of 23 radiation damage series analysed in "Quantifying radiation damage in the Protein Data Bank"

description: Dataset of Bnet values, plus associated metadata (resolution, Rwork, Rfree, temperature, etc.), for 23 radiation damage series deposited in the PDB that are analysed in the publication "Quantifying radiation damage in the Protein Data Bank"
DOI: 10.5281/zenodo.4943668
title: Dataset of Bnet values of 94,145 PDB-REDO structures analysed in "Quantifying radiation damage in the Protein Data Bank"

description: Dataset of Bnet values, plus associated metadata (resolution, Rwork, Rfree, temperature, etc.), for 94,145 PDB-REDO structures analysed in the publication "Quantifying radiation damage in the Protein Data Bank"
DOI: 10.6084/m9.figshare.14794101.v1
title: Patterns of Global BackProjection depth

description: This zip file includes the scripts and the data (Backprojection results from IRIS backprojection database; Slab2 model from USGS) to show the ubiquitous depth-frequeuncy relation found by global backprojection images.
DOI: 10.6084/m9.figshare.14794101
title: Patterns of Global BackProjection depth

description: This zip file includes the scripts and the data (Backprojection results from IRIS backprojection database; Slab2 model from USGS) to show the ubiquitous depth-frequeuncy relation found by global backprojection images.
DOI: 10.5517/ccdc.csd.cc22bhgd
title: CCDC 1916713: Experimental Crystal Structure Determination

description: Related Article: Declan Golding, Nicholas Carter, David Robinson, Anthony Fitzpatrick|2021|CSD Communication|||
description: Related Article: Declan J. L. Golding, Nicholas Carter, David Robinson, Anthony J. Fitzpatrick|2020|Sustainability|12|9599|doi:10.3390/su12229599
DOI: 10.5517/ccdc.csd.cc26hbwy
title: CCDC 2040540: Experimental Crystal Structure Determination

description: Related Article: Sudershan Reddy Gondi|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26hc25
title: CCDC 2040546: Experimental Crystal Structure Determination

description: Related Article: Sudershan Reddy Gondi|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26hfy3
title: CCDC 2040635: Experimental Crystal Structure Determination

description: Related Article: Sudershan Reddy Gondi|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26hfz4
title: CCDC 2040636: Experimental Crystal Structure Determination

description: Related Article: Sudershan Reddy Gondi|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26hg06
title: CCDC 2040637: Experimental Crystal Structure Determination

description: Related Article: Sudershan Reddy Gondi|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc279lgm
title: CCDC 2064800: Experimental Crystal Structure Determination

description: Related Article: Pengfei Wang, Fanda Meng, Hao Su, Lijie Liu, Maroof Ahmad Khan, Hui Li|2021|RSC Advances|11|19747|doi:10.1039/D1RA02582A
DOI: 10.6073/pasta/0a2b0bcacd93c02b8ab97c91d440ae8b
title: Eight Mile Lake Research Watershed, Thaw Gradient: Seasonal thaw depth 2004-2020

description: In this larger study, we are asking the question: Is old carbon that comprises the bulk of the soil organic matter pool released in response to thawing of permafrost? We are answering this question by using a combination of field and laboratory experiments to measure radiocarbon isotope ratios in soil organic matter, soil respiration, and dissolved organic carbon, in tundra ecosystems. The objective of these proposed measurements is to develop a mechanistic understanding of the SOM sources contributing to C losses following permafrost thawing. We are making these measurements at an established tundra field site near Healy, Alaska in the foothills of the Alaska Range. Field measurements center on a natural experiment where permafrost has been observed to warm and thaw over the past several decades. This area represents a gradient of sites each with a different degree of change due to permafrost thawing. As such, this area is unique for addressing questions at the time and spatial scales relevant for change in arctic ecosystems.
DOI: 10.25345/c5jk0b
title: MassIVE MSV000087641 - Using APEX proximity labeling and affinity purification to identify mitochondrial specific targets of GSK3 in staged oocytes
title: sample number Description 645061 CD8_APEX_control 645062 CD8_APEX_control 645063 GSK3_APEX 645064 GSK3_APEX
DOI: 10.15468/6cjbjd
title: Belostomatidae (Heteroptera: Nepomorpha) held in the Invertebrate Collection of the Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil: inventory and new distributional records

description: This dataset contains the digitized treatments in Plazi based on the original journal article Almeida, Thaís Melo de, Stefanello, Fabiano, Hamada, Neusa (2019): Belostomatidae (Heteroptera: Nepomorpha) held in the Invertebrate Collection of the Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil: inventory and new distributional records. Papéis Avulsos de Zoologia 59: 1-23, DOI: 10.11606/1807-0205/2019.59.06
DOI: 10.25345/c5dr63
title: MassIVE MSV000087642 - proteomic analysis of mitochondria isolated from growing and quiescent mouse 3T3 cells.
title: sample number Description 818318 Quiescent_3T3_cells 818317 Quiescent_3T3_cells 818316 Quiescent_3T3_cells 818315 Active_3T3_cells 818314 Active_3T3_cells
DOI: 10.6084/m9.figshare.14794060.v1
title: Supplementary Information Tables from Palaeoproteomic analyses of dog palaeofaeces reveal a preserved dietary and host digestive proteome

description: 10 supplementary tables including identified peptides and proteins, biological processes, and ZooMS identifications
DOI: 10.5066/p996rw4c
title: Oil and Gas Wells in Southern Louisiana that Penetrated the Upper Miocene Sequence

description: The drilling history documents oil and gas wells in the Upper Miocene sequence as a whole and in 10-year intervals. The wells included in this interval are determined by completion date and by comparing the depth of the wells to structure contours of the Upper Miocene sequence. The data are provided in a single file (um_prod.shp) as well as eight 10-year interval files covering 1920 through 1999. These datasets contain basic data and interpretations developed and compiled by the U.S. Geological Survey's Framework Studies and Assessment of the Gulf Coast Project. Other major sources of data include publicly available information from state agencies as well as publications of the U.S. Geological Survey and other scientific organizations. In cases where company proprietary data were used to produce various derivatives such as contour surfaces, the source is cited but the data are not displayed.
DOI: 10.6084/m9.figshare.14794060
title: Supplementary Information Tables from Palaeoproteomic analyses of dog palaeofaeces reveal a preserved dietary and host digestive proteome

description: 10 supplementary tables including identified peptides and proteins, biological processes, and ZooMS identifications
DOI: 10.15468/x9bqvm
title: World List of Scleractinia

description: This global marine species list is part of the World Register of Marine Species database, which aims to provide the most authoritative list of names of all marine species globally. Data have been contributed to the Catalogue of Life via the WoRMS, hosted by the Flanders Marine Institute (VLIZ).
DOI: 10.15468/jrb2us
title: World Catalogue of Opiliones

description: The WCO project started with an annotated catalogue of the New World Laniatores (Kury 2003). Then it has been expanded to include all suborders of harvestmen and all Earth realms, instead of only the Nearctic and Neotropical, and is currently in manuscript form as a conventional paper catalogue. // The current team, led by Kury, started to transfer all information of the MS to the TaxonWorks platform in layers, aiming to go deeper and deeper to become a repository of various kinds of information on these organisms, but especially a complete/reliable/authoritative source of taxonomic/nomenclatural information on harvestmen. // There is a public interface at https://wcolite.com, which is often updated, and the goals are described in detail in Kury et al. (2021). // // Kury, A. B., 2003. Annotated catalogue of the Laniatores of the New World (Arachnida, Opiliones). Revista Iberica de Aracnología, Zaragoza, vol. especial monográfico, nº 1: 1-337. Kury AB, Mendes AC, Cardoso L, Kury MS, Granado AA, Yoder MJ & Kury IS (2021) WCO-Lite version 1.1: an online nomenclatural catalog of harvestmen of the World (Arachnida, Opiliones) curated in TaxonWorks. Zootaxa, 4908 (3): 447–450.
DOI: 10.15468/w3cas8
title: MilliBase

description: MilliBase is a global taxonomic database, managed by a group of diplopod experts that aims to capture all described millipede, pauropod and symphylan species with the associated literature, the authorities and original descriptions of species, genera and all units of higher classification
DOI: 10.15468/syws8n
title: Fossil Ginkgoales

description: This dataset represents a part extracted from the database of the National Museum Prague. It was prepared by Jiří Kvaček with help of Olexandra Chernomorets. The dataset comprises all described unequivocal fossil members of the Ginkgoales (fossil plant remains which could be assigned to this group with certainty). It is based on reproductive structures assigned to Ginkgoales and their associated organs. As a part of this dataset there are main taxa of foliage and wood structures assigned to the group with high degree of probability. Additional taxa of Ginkgoales are a part of another version, which is in state of preparation.
DOI: 10.15468/92kjfq
title: World Amphipoda Database

description: The amphipods belong to the very diverse crustacean class Malacostraca, which includes other common groups such as crabs, lobsters and shrimp. The order Amphipoda is part of the superorder Peracarida, uniting a diverse group of small shrimp-like taxa that brood their young in a pouch, with no independent larval dispersal stage. It currently contains over 10k species
DOI: 10.15468/c4bxt2
title: Providing information on the World's thrips

description: ThripsWiki site was designed and produced in Canberra by Inkeri Lehtinen with Laurence Mound. Data was drawn from a web-based checklist that since 2005 was available through CSIRO Australia, but which for technical reasons has had to be abandoned. "Thysanoptera (Thrips) of the World - a checklist" originated from card-catalogues maintained over many years at the Natural History Museum, London, and at the Senckenberg Museum, Frankfurt. GBIF funded visits to check data at the major thrips collections in Frankfurt, London and Washington DC for the 2005 system. The available data has been extensively revised and enriched through bibliographic and web searches, and production of this new site was supported by DAFF Australia.
DOI: 10.15468/s4qs6p
title: Staphyliniformia world catalog database

description: The project is an ongoing effort to build and maintain a catalog all family-, genus- and species-group names in the beetle group Staphyliniformia (superfamilies Staphylinoidea (including Jacobsoniidae), Hydrophiloidea & Histeroidea), including all named fossils. All original descriptions were consulted to verify original data, and the current status, distribution, and in many cases significant subsequent literature and type depositories and type localities for species are indicated. It is an extension of the database catalogs initiated as a US-NSF PEET project (see http://archive.fieldmuseum.org/peet_staph), initially based on multiple sources as listed there, but subsequently extensively edited and actively updated.
DOI: 10.15468/a2mksp
title: World catalogue of the tribe Sepidiini (Tenebrionidae, Coleoptera)

description: The catalogue includes all valid family-group (six subtribes), genus-group (55 genera, 33 subgenera), and species-group names (1009 species and subspecies) of Sepidiini darkling beetles (Coleoptera: Tenebrionidae: Pimeliinae), and their available synonyms. For each name, the author, year, and page number of the description are provided, with additional information (e.g., type species for genus-group names, author of synonymies for invalid taxa, notes) depending on the taxon rank. Verified distributional records (loci typici and data acquired from revisionary publications) for all the species are gathered. The Catalogue is published in ZooKeys 844: 1–121 (2019), https://doi.org/10.3897/zookeys.844.34241.
DOI: 10.15468/8bgw9r
title: The Interim Register of Marine and Nonmarine Genera

description: The Interim Register of Marine and Nonmarine Genera is a provisional (or ‘interim’) compilation of genus names – including species names in many cases – and covers both living and extinct biota into a single system to support taxonomic and other queries dealing with e.g. homonyms, authorities, parent-child relationships, spelling variations and distinctions between marine and non-marine or fossil and recent taxa
DOI: 10.15468/uunvn2
title: ICTV Master Species List

description: The 7th lCTV Report formalized for the first time the concept of the virus species as the lowest taxon (group) in a branching hierarchy of viral taxa. As defined therein, “a virus species is a polythetic class of viruses that constitute a replicating lineage and occupy a particular ecological niche”. A “polythetic class” is one whose members have several properties in common, although they do not necessarily all share a single common defining property. In other words, the members of a virus species are defined collectively by a consensus group of properties. Virus species thus differ from the higher viral taxa, which are “universal” classes and as such are defined by properties that are necessary for membership. Viruses are real physical entities produced by biological evolution and genetics, whereas virus species and higher taxa are abstract concepts produced by rational thought and logic. The virus/species relationship thus represents the front line of the interface between biology and logic. Viruses (including virus isolates, strains, variants, types, sub-types, serotypes, etc.) should wherever possible be assigned as members of the appropriate virus species, although many viruses remain unassigned because they are inadequately characterized. All virus species must be represented by at least one virus isolate. Almost all virus species are members of recognized genera. A few species remain unassigned in their families although they have been clearly identified as new species. Some genera are members of recognized sub-families. All sub-families and most genera are members of recognized families. Some genera are not yet assigned to a family; in the future they may either join an existing family or constitute a new family with other unassigned genera. Some families are members of the following recognized orders: Caudovirales, Nidovirales and Mononegavirales. The hierarchy of recognized viral taxa is therefore: (Order), Family, (Sub-family), Genus, Species Only the aforementioned taxa are recognized by the ICTV. Other groupings (from clade to super-family), may communicate useful descriptive information in some circumstances but they have no formally recognized taxonomic meaning. Similarly, the term “quasi-species”, although it captures an important concept, has no recognized taxonomic meaning. The creation or elimination, (re)naming, and (re)assignment of a virus species, genus, (sub)family, or order are all taxonomic acts that require public scrutiny and debate, leading to formal approval by the full membership of the ICTV. In contrast, the naming of a virus isolate and its assignment to a pre-existing species are not considered taxonomic acts and therefore do not require formal ICTV approval. Instead they will typically be accomplished by publication of a paper describing the virus isolate in the peer-reviewed virology literature.
DOI: 10.15468/8kygsb
title: World Database of Legumes

description: The International Legume Database and Information Service (ILDIS) is a long-term programme of co-operation among legume specialists world-wide to create a biodiversity database for the Leguminosae (Fabaceae) family. The database provides a taxonomic checklist plus basic factual data on distribution, common names, life-forms, uses, literature references to descriptions, illustrations and maps. Now database includes contribution from \"ILDIS for i4Life\" dataset by M. Novoselova, 2013. In 2000 - 2013, ILDIS was funded by institutions including the Global Biodiversity Information Facility (GBIF), the University of Reading, the Catalogue of Life (CoL), and European Commission projects for taxonomic infrastructures (EuroCat, 4D4Life and i4Life).
DOI: 10.15468/ja97kc
title: The Global Lepidoptera Names Index

description: LepIndex is a digitised and updated version of the unique index card archive to the scientific names of the living and fossil butterflies and moths of the world at the Natural History Museum (London). This card index was produced by the museum’s lepidopterists over many decades and contains about 95 % of all currently valid Lepidoptera names (15,578 genus and 157,474 species names in total), together with synonyms, misspellings and misidentifications.
DOI: 10.15468/c2thaw
title: Moss TROPICOS Database

description: The World Checklist of Mosses (W3MOST) provides current information on bryophyte species from the TROPICOS MOST database compiled by the Index of Mosses project, at the Missouri Botanical Garden. This database extraction, unlike the Index of Mosses, includes taxonomic opinions of numerous authors. All the known species of mosses are included.
DOI: 10.15468/bryuzy
title: Global Species Database of Odonata

description: The Global Species Database of Odonata is a list of all names of extant species of dragonflies and damselflies of the world. The present list is based on a database built during a period of twenty years. The original information was derived from a published catalogue by Davies & Tobin (1984, 1985). However, original publications were consulted to check the spelling and original combination of (virtually) all names. The present taxonomic status of every name in this list is based on published authoritative sources. Addition of the names of fossil taxa, and setting up a management committee for this database, are to be expected in the near future. The original information of the GSD Odonata is managed using a FoxPro application.
DOI: 10.15468/4ksyxz
title: Orthoptera Species File

description: The Orthoptera Species File is a taxonomic database of the world's Orthoptera (grasshoppers, locusts, katydids and crickets), both living and fossil. It has full synonymic and taxonomic information for more than 28,070 valid species, 45,850 scientific names, 213,200 citations to 14,200 references, 96,300 images, 1630 sound recordings, and 99,700 specimen records.
DOI: 10.15468/5jq74n
title: Parhost World Database of Fleas

description: The Parhost World Database of Fleas is a complete electronic taxonomic checklist of order Siphonaptera. This is part of the original analytical system PARHOST, which contains extensive data on flea morphology, parasite–host associations, and geographical distribution.