cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16644856
title: Supplementary Material for: Systematic Review of Outcome Measures Used in Observational Studies of Adults with Eosinophilic Esophagitis

description: <b><i>Background:</i></b> Over the last 20 years, diverse outcome measures have been used to evaluate the effectiveness of therapies for eosinophilic esophagitis (EoE). This systematic review aims to identify the readouts used in observational studies of topical corticosteroids, diet, and dilation in adult EoE patients. <b><i>Methods:</i></b> We searched MEDLINE and Embase for prospective and retrospective studies (cohorts/case series, randomized open-label, and case-control) evaluating the use of diets, dilation, and topical corticosteroids in adults with EoE. Two authors independently assessed the articles and extracted information about histologic, endoscopic, and patient-reported outcomes and tools used to assess treatment effects. <b><i>Results:</i></b> We included 69 studies that met inclusion criteria. EoE-associated endoscopic findings (assessed either as absence/presence or using Endoscopic Reference Score) were evaluated in 24/35, 11/17, and 9/17 studies of topical corticosteroids, diet, and dilation, respectively. Esophageal eosinophil density was recorded in 32/35, 17/17, and 11/17 studies of topical corticosteroids, diet, and dilation, respectively. Patient-reported outcomes were not uniformly used (only in 14, 8, and 3 studies of topical corticosteroids, diet, and dilation, respectively), and most tools were not validated for use in adults with EoE. <b><i>Conclusions:</i></b> Despite the lack of an agreed set of core outcomes that should be recorded and reported in studies in adult EoE patients, endoscopic EoE-associated findings and esophageal eosinophil density are commonly used to assess disease activity in observational studies. Standardization of outcomes and data supporting the use of outcomes are needed to facilitate interpretation of evidence, its synthesis, and comparisons of interventions in meta-analyses of therapeutic trials in adults with EoE.
DOI: 10.6084/m9.figshare.16644856.v1
title: Supplementary Material for: Systematic Review of Outcome Measures Used in Observational Studies of Adults with Eosinophilic Esophagitis

description: <b><i>Background:</i></b> Over the last 20 years, diverse outcome measures have been used to evaluate the effectiveness of therapies for eosinophilic esophagitis (EoE). This systematic review aims to identify the readouts used in observational studies of topical corticosteroids, diet, and dilation in adult EoE patients. <b><i>Methods:</i></b> We searched MEDLINE and Embase for prospective and retrospective studies (cohorts/case series, randomized open-label, and case-control) evaluating the use of diets, dilation, and topical corticosteroids in adults with EoE. Two authors independently assessed the articles and extracted information about histologic, endoscopic, and patient-reported outcomes and tools used to assess treatment effects. <b><i>Results:</i></b> We included 69 studies that met inclusion criteria. EoE-associated endoscopic findings (assessed either as absence/presence or using Endoscopic Reference Score) were evaluated in 24/35, 11/17, and 9/17 studies of topical corticosteroids, diet, and dilation, respectively. Esophageal eosinophil density was recorded in 32/35, 17/17, and 11/17 studies of topical corticosteroids, diet, and dilation, respectively. Patient-reported outcomes were not uniformly used (only in 14, 8, and 3 studies of topical corticosteroids, diet, and dilation, respectively), and most tools were not validated for use in adults with EoE. <b><i>Conclusions:</i></b> Despite the lack of an agreed set of core outcomes that should be recorded and reported in studies in adult EoE patients, endoscopic EoE-associated findings and esophageal eosinophil density are commonly used to assess disease activity in observational studies. Standardization of outcomes and data supporting the use of outcomes are needed to facilitate interpretation of evidence, its synthesis, and comparisons of interventions in meta-analyses of therapeutic trials in adults with EoE.
DOI: 10.25917/yejz-jw81
title: Voucher specimen image of Krueger 27 (Utricularia byrneana; Lentibulariaceae).
DOI: 10.6084/m9.figshare.16644754.v1
title: Supplementary Table S1

description: STH sequences used in the phylogenetic analysis
DOI: 10.5281/zenodo.5517110
title: Guadiana river delta bathymetry surveys from 1944 to 1992 (digitalization)

description: Digitalization of Guadiana river delta bathymetry. Data consists of vector points and lines (shapefile) with bathymetric values (z) as reference to Hydrographic Zero (Z.H.): 2 m bellow mean sea level, observed in Cascais tidal gauge, Portugal. It also has *.csv files (zxy) of the point data. Data was manually digitized from paper charts regarding the following surveys (month/year): ?/1944; may, june/1958; june/1967; may, june/1969; march, april/1973; april/1977; july/1982; april, may/1986; april/ 1988; july/august/ 1992. Original map scale is 1:5000. Digitalization o paper charts produced 0.67 m x 0.65 m cell size raster files. All data is projected to ESPG: 3763 (ETRS89 / Portugal TM06). Surveys were originally performed by Portuguese hydrographic authorities: Brigada Hidrográfica 4; MOPTC - DSF - DCME
DOI: 10.5281/zenodo.5517109
title: Guadiana river delta bathymetry surveys from 1944 to 1992 (digitalization)

description: Digitalization of Guadiana river delta bathymetry. Data consists of vector points and lines (shapefile) with bathymetric values (z) as reference to Hydrographic Zero (Z.H.): 2 m bellow mean sea level, observed in Cascais tidal gauge, Portugal. It also has *.csv files (zxy) of the point data. Data was manually digitized from paper charts regarding the following surveys (month/year): ?/1944; may, june/1958; june/1967; may, june/1969; march, april/1973; april/1977; july/1982; april, may/1986; april/ 1988; july/august/ 1992. Original map scale is 1:5000. Digitalization o paper charts produced 0.67 m x 0.65 m cell size raster files. All data is projected to ESPG: 3763 (ETRS89 / Portugal TM06). Surveys were originally performed by Portuguese hydrographic authorities: Brigada Hidrográfica 4; MOPTC - DSF - DCME
DOI: 10.5519/qd.jldl6k50
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (789 records)
DOI: 10.25917/t3v8-9t02
title: Voucher specimen image of Krueger 28 (Utricularia tubulata; Lentibulariaceae).
DOI: 10.6084/m9.figshare.16644754
title: Supplementary Table S1

description: STH sequences used in the phylogenetic analysis
DOI: 10.6084/m9.figshare.16644754.v3
title: Supplementary Table S1

description: STH sequences used in the phylogenetic analysis
DOI: 10.6084/m9.figshare.16644754.v2
title: Supplementary Table S1

description: STH sequences used in the phylogenetic analysis
DOI: 10.14457/cu.the.1998.178
title: Gas-carbon reactions
DOI: 10.14457/cu.the.1998.179
title: Precipitation in solutions containing mixture of synthetic surfactant and soap : II. effect of sodium dodecyl sulfate on hardness tolerance of sodium octanoate
DOI: 10.14457/cu.the.1998.180
title: Recognizing the impact of migration on reproductive health in Myanmar
DOI: 10.14457/cu.the.1998.181
title: School-based HIV-AIDS peer education program in school youths in Myanmar
DOI: 10.14457/cu.the.1998.182
title: Dissolution of asphaltene in asphaltic sludge
DOI: 10.14457/cu.the.1998.183
title: Synthesis and characterization of alumatrane complexes directly from Al(OH)3 and triisopropanolamine
DOI: 10.14457/cu.the.1998.184
title: The effect of triblock copolymer on viscoelastic properties of immiscible blends
DOI: 10.14457/cu.the.2019.117
title: The invention of plastic plate for the semiquantitative detection of somatic cells in farm bulk tank milk

description: Bulk tank milk somatic cell count (BTM SCC) is worldwide acceptable as an indicator of subclinical mastitis and milk quality at the farm level. Several countries determine the BTM SCC level for quality control and milk pricing. In Thailand, BTM SCC standard is set at 500,000 cells/ml and premium milk quality is set at less than 100,000 cells/ml. Milk collecting centers (MCCs) use CMT (California Mastitis Test) for screening raw milk quality. However, CMT has an error and high variation. This study aims to invent a new semiquantitative device for determining BTM SCC and to validate the device in comparison with FossomaticTM FC and CMT. The results showed that the use of a specifically designed plastic plate with a mixture of specific chemical reagents and BTM is able to discriminate a semiquantitative BTM SCC according to reading scores 0,1,2 and 3. The reading scores is significantly correlated with FossomaticTM FC (r=0.80, p&lt;0.05) and CMT (r=0.94, p&lt;0.05) at the laboratory testing. At MCC, this new semiquantitative device is able to determine BTM SCC in which the test reading is correlated with the FossomaticTM FC (r=0.85, p&lt;0.05). The accuracies of the test device are equal to 91.18% (95%CI = 93.66% – 98.19%) at SCC level less than 100,000 cells/ml and equal to 96.41% (95%CI = 87.42% – 94.10%) at SCC level more than or equal to 500,000 cells/ml.
DOI: 10.14457/cu.the.2019.118
title: Assessment of left atrial function in feline hypertrophic cardiomyopathy by using two dimensional speckle tracking echocardiography

description: Hypertrophic cardiomyopathy (HCM) is one of the most common myocardial diseases in cats. The left atrial (LA) function plays an essential role in compensatory mechanism of left ventricle with diastolic dysfunction to maintain cardiac output in cats affected with HCM. Nowadays, there are several echocardiographic techniques used to evaluate the left atrial function; however, each technique has limitations. To overcome the limitations, two-dimensional speckle tracking echocardiography (2D-STE) is a novel technique for assessment the LA function. To date, no study focusing on assessment of the left atrial function by 2D-STE in feline HCM has been reported. The objective of this study was to evaluate changes in LA function in HCM cats compared to normal cats by using 2D-STE. Twenty healthy control cats and seventeen client-owned cats affected with HCM were included in this study. The intra-observer and inter-observer measurement variability of peak atrial longitudinal strain (PALS) were 4.17% and 14%, respectively. The mean value and standard deviation of PALS in the HCM group (13.16 ± 8.64%) was lower than those of the control group (28.54 ±10.31%) (p &lt; 0.001). The atrial longitudinal strain of septal and lateral regions was significantly reduced in the HCM group compared to the normal group. The atrial longitudinal strain was lowest at the LA roof region. The PALS correlated with the percentage of fractional shortening of the LA (LA-FS) (r=0.538, p=0.001), the percentage of the LA ejection fraction (LA-EF) (r =0.797, p&lt;0.001), and the LA fractional area change (FAC) (r =0.746, p&lt;0.001). In conclusion, the PALS can be used to evaluate changes in LA function in HCM cats. It is a reproducibility method for assessing the LA function in cats affected with HCM.
DOI: 10.14457/cu.the.2019.119
title: Resistome analysis of aeromonas veronii strains isolated from diseased outbreak in tilapia farms in Thailand

description: Aeromonas veronii outbreaks in tilapia farming caused relatively high mortality. Moreover, it was resistant to many kinds of antimicrobial used in Thailand aquaculture. According to no CLSI standard, the determination of antimicrobial efficacy has been limited phenotypically; the genomics study is required. This research aims to analyze the resistome of A. veronii isolated from diseased Tilapia in Chainat, Nong Khai and Uttaradit province, Thailand. Twelve isolates of A. veronii were identified base on gyrB sequencing then determined the MIC value to eight antimicrobials (AMP, AML, GEN, ENR, OXO, OXY, SXT, and FFC). According to MIC patterns, five representatives were performed the whole genome sequencing (WGS) and resistome analysis, including 15 isolates from NCBI. All Tilapia isolates are susceptible to FFC but resistant to AML and AMP; OT resistance is the most dominant resistance. For WGS analysis, 4.5 Mbp of A. veronii was characterized, 19 ARGs were detected by resistome analysis and 14 genes were shared among A. veronii population. In conclusion, A. veronii strains isolated from Tilapia exhibit resistant to several antimicrobials and multidrug resistance (MDR) which related to the presence of multiple ARGs. A. veronii shared the ARGs in their population worldwide with the possibility of acquisition and plasmid-mediated.
DOI: 10.14457/cu.the.2018.475
title: Economic effects of social capital

description: This thesis investigates economic effects of social capital in three separate studies. The first two studies deal with the effect of social capital on two factors that pave the way for fiscal stress, informality and fiscal cyclicality. While the shadow economy as a form of tax evasion deteriorates public revenues, a cyclical behavior of fiscal policy often goes along with an extension of lasting financial obligations in economic good times which makes public budgets vulnerable in following downturns. The third study focusses on the occurrence of fiscal stress which lends itself as research object for the analysis of the overall effect of social capital in this context. The main results indicate that there is a causal and negative relationship between: 1.) Institutional trust and the size of the shadow economy, whereby the effect of the former seems conditional on generalized trust; 2.) Social capital (as a whole) and fiscal procyclicality, which partially runs through the adoption of fiscal rules and the extent of corruption; 3.) Generalized trust and the occurrence of fiscal stress, though the link between time preference and fiscal stress appears equally pronounced.
DOI: 10.21227/1hgf-ch36
title: Engineering Education Technologies Report 2019

description: This dataset analyzes a survey delivered in 2019 to 259 experts in engineering education that asked them to forecast which information and communication technologies were most likely to impact the practice of engineering education based on the expert's discipline (electrical, electronics, mechanical, telecommunications engineering, computer science, etc.) and region. Results indicate that Adaptive and personalized learning technologies, Learning analytics, and Open educational resources are the three most promising technologies that will impact engineering education in the short term.
DOI: 10.6084/m9.figshare.16644895
title: Supplementary Material for: miR-3929 Inhibits Proliferation and Promotes Apoptosis by Downregulating Cripto-1 Expression in Cervical Cancer Cells

description: Cripto-1 is highly expressed in many cancers, and downregulating its expression may become a promising approach for cancer treatment. However, the regulation of Cripto-1 expression is not well characterized. In this study, we focused on the post-transcriptional regulation of Cripto-1 expression and analyzed the potential miRNAs that bind to the 3′UTR of Cripto-1 mRNA. miR-3929 was found to be able to bind to the 3′UTR and downregulate the expression of Cripto-1 in cervical cancer cells. Then, we analyzed the effect of miR-3929 on the biological behavior of cervical cancer cells, finding that miR-3929 could reduce cell viability, DNA synthesis, and Ki67 expression and induce cell cycle arrest in the G2/M phase; overexpression of Cripto-1 reversed the inhibitory effect of miR-3929 on proliferation. Moreover, DAPI staining and flow cytometry revealed that miR-3929-induced cell apoptosis is dependent on the mitochondrial pathway; the overexpression of Cripto-1 reversed the proapoptotic effect of miR-3929. Finally, the in vivo results showed that miR-3929 significantly inhibits the growth of HeLa xenograft tumors in nude mice. Therefore, our findings suggest that miR-3929 inhibits the proliferation and induces the apoptosis of cervical cancer cells by downregulating Cripto-1 via specifically targeting the 3′UTR of its mRNA.
DOI: 10.6084/m9.figshare.16644895.v1
title: Supplementary Material for: miR-3929 Inhibits Proliferation and Promotes Apoptosis by Downregulating Cripto-1 Expression in Cervical Cancer Cells

description: Cripto-1 is highly expressed in many cancers, and downregulating its expression may become a promising approach for cancer treatment. However, the regulation of Cripto-1 expression is not well characterized. In this study, we focused on the post-transcriptional regulation of Cripto-1 expression and analyzed the potential miRNAs that bind to the 3′UTR of Cripto-1 mRNA. miR-3929 was found to be able to bind to the 3′UTR and downregulate the expression of Cripto-1 in cervical cancer cells. Then, we analyzed the effect of miR-3929 on the biological behavior of cervical cancer cells, finding that miR-3929 could reduce cell viability, DNA synthesis, and Ki67 expression and induce cell cycle arrest in the G2/M phase; overexpression of Cripto-1 reversed the inhibitory effect of miR-3929 on proliferation. Moreover, DAPI staining and flow cytometry revealed that miR-3929-induced cell apoptosis is dependent on the mitochondrial pathway; the overexpression of Cripto-1 reversed the proapoptotic effect of miR-3929. Finally, the in vivo results showed that miR-3929 significantly inhibits the growth of HeLa xenograft tumors in nude mice. Therefore, our findings suggest that miR-3929 inhibits the proliferation and induces the apoptosis of cervical cancer cells by downregulating Cripto-1 via specifically targeting the 3′UTR of its mRNA.
DOI: 10.5281/zenodo.5517228
title: Inf-kwd

description: Enhancing Political Bias Detection in News Headlines using inferential Commonsense Knowledge
DOI: 10.5281/zenodo.5517227
title: Inf-kwd

description: Enhancing Political Bias Detection in News Headlines using inferential Commonsense Knowledge
DOI: 10.5281/zenodo.5517224
title: Broca's Area Light-Sheet Microscopy

description: Example dataset containing light-sheet selective plane illumination microscopy (SPIM) data to illustrate BIDS convention.<br> BIDS version 1.6.0 - Microscopy BEP031 version 0.0.5 (2021-09-07T14:20:00)
DOI: 10.6084/m9.figshare.16557640
title: Supplementary Table S9 from Gossip and reputation in everyday life

description: Full mediation models on the relation between gossip content on behavioural intentions toward the gossip target via relationship value during experience sampling.
DOI: 10.6084/m9.figshare.16557640.v2
title: Supplementary Table S9 from Gossip and reputation in everyday life

description: Full mediation models on the relation between gossip content on behavioural intentions toward the gossip target via relationship value during experience sampling.
DOI: 10.6084/m9.figshare.16557640.v1
title: Supplementary Table S9 from Gossip and reputation in everyday life

description: Full mediation models on the relation between gossip content on behavioural intentions toward the gossip target via relationship value during experience sampling.
DOI: 10.6084/m9.figshare.14995071
title: Supplementary Material for: A Lipid Mixture Enriched by Ceramide NP with Fatty Acids of Diverse Chain Lengths Contributes to Restore the Skin Barrier Function Impaired by Topical Corticosteroid

description: Medicine
DOI: 10.5281/zenodo.5517238
title: MITgcm 2.8deg Transport Matrix configuration

description: This repository contains transport matrices and associated data for the MITgcm 2.8deg configuration. For the most recent version of these files go to: http://kelvin.earth.ox.ac.uk/spk/Research/TMM/TransportMatrixConfigs/. The Transport Matrix Method driver code is available from https://github.com/samarkhatiwala/tmm.
DOI: 10.6084/m9.figshare.14955234
title: DFT study of the epoxide ring opening step of the ring opening copolymerisation of epoxide and cyclic anhydride catalyzed by a heterodinuclear Al(III)/K(I) complex

description: Data to support article: <br><b>Catalytic Synergy Using Al(III) and Group 1 Metals to Accelerate Epoxide and Anhydride Ring-Opening Copolymerizations<br></b><br><i>Journal: ACS Catalysis, 2021, DOI:10.1021/acscatal.1c04020<br></i><i><br></i>https://doi.org/10.1021/acscatal.1c04020<i><br></i> <br><i>Authors: Wilf Diment,a Georgina L. Gregory,a Andreas Phanopoulos,a Antoine Buchardb and Charlotte K. Williamsa* </i> <br><br><sup>a</sup>Chemistry Research Laboratory, Oxford Chemistry, 12 Mansfield Road, Oxford, OX1 3TA, UK. <br><br><sup>b</sup>Department of Chemistry, Centre for Sustainable and Circular Technologies, University of Bath, Claverton Down, Bath BA2 7AY, UK <br><br>*Email: charlotte.williams@chem.ox.ac.uk <br>For DFT inquiries: a.buchard@bath.ac.uk <br><br>Description: <br>DFT optimised geometries and computed free enthalpies of local minima (intermediates) and local maxima (transition states; validated further by IRC calculations) were used to investigate the mechanism of the reaction between a molecule of cyclohexene oxide and a macrocyclic heterodinuclear Al(III)/K(I) complex (monomer model; with acetate co-ligands), to account for the epoxide ring opening step of the ROCOP process.<br>Protocols:<br>Gaussian16 (rev D.02) software<br>Functional: rwB97XDSolvent model: cpcm=(tetrahydrofuran,read); eps=16; epsinf=1.867Temperature:298.15 KConcentration: 1 mol/L<br>Basis sets:<br>C H: 6-31+g(d,p)<br>K Al O N: 6-311+g(d)<br><br>Free enthalpies were recomputed using Grimme quasi-harmonic approximation of Grimme, with a cut off frequency of 50 cm<sup>–1</sup>, and a temperature and concentration correction (T=373.15 K, [CHO]=9.88 mol/L).<br><br>Content:- Gaussian16 rev A.03 output files <br>- Epoxide ring opening.pdf, illustrating the calculations made and summarising the free enthalpies computed<br>
DOI: 10.6084/m9.figshare.14955234.v1
title: DFT study of the epoxide ring opening step of the ring opening copolymerisation of epoxide and cyclic anhydride catalyzed by a heterodinuclear Al(III)/K(I) complex

description: Data to support article: <br><b>Catalytic Synergy Using Al(III) and Group 1 Metals to Accelerate Epoxide and Anhydride Ring-Opening Copolymerizations<br></b><br><i>Journal: ACS Catalysis, 2021, DOI:10.1021/acscatal.1c04020<br></i><i><br></i>https://doi.org/10.1021/acscatal.1c04020<i><br></i> <br><i>Authors: Wilf Diment,a Georgina L. Gregory,a Andreas Phanopoulos,a Antoine Buchardb and Charlotte K. Williamsa* </i> <br><br><sup>a</sup>Chemistry Research Laboratory, Oxford Chemistry, 12 Mansfield Road, Oxford, OX1 3TA, UK. <br><br><sup>b</sup>Department of Chemistry, Centre for Sustainable and Circular Technologies, University of Bath, Claverton Down, Bath BA2 7AY, UK <br><br>*Email: charlotte.williams@chem.ox.ac.uk <br>For DFT inquiries: a.buchard@bath.ac.uk <br><br>Description: <br>DFT optimised geometries and computed free enthalpies of local minima (intermediates) and local maxima (transition states; validated further by IRC calculations) were used to investigate the mechanism of the reaction between a molecule of cyclohexene oxide and a macrocyclic heterodinuclear Al(III)/K(I) complex (monomer model; with acetate co-ligands), to account for the epoxide ring opening step of the ROCOP process.<br>Protocols:<br>Gaussian16 (rev D.02) software<br>Functional: rwB97XDSolvent model: cpcm=(tetrahydrofuran,read); eps=16; epsinf=1.867Temperature:298.15 KConcentration: 1 mol/L<br>Basis sets:<br>C H: 6-31+g(d,p)<br>K Al O N: 6-311+g(d)<br><br>Free enthalpies were recomputed using Grimme quasi-harmonic approximation of Grimme, with a cut off frequency of 50 cm<sup>–1</sup>, and a temperature and concentration correction (T=373.15 K, [CHO]=9.88 mol/L).<br><br>Content:- Gaussian16 rev A.03 output files <br>- Epoxide ring opening.pdf, illustrating the calculations made and summarising the free enthalpies computed<br>
DOI: 10.17036/researchdata.aston.ac.uk.00000521
title: Dataset for The Novel Application of Geometric Morphometrics with Principal Component Analysis to Existing G Protein-Coupled Receptor (GPCR) Structures