cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6y35xe
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Morphologische Daten von Puffinus creatopus",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205970-210914110416597/datasets/export for details.
DOI: 10.25549/inscriptifact-ouc111290342
title: Incised Jug Ayia Irini 1961x18-2, CM 1961x18-2

description: [Text Description:] [L] R/D-' (?) ---'D/RS/SM ❧ [Text or Publication Number Note:] Inscr. Ph. 15; CM 1961x18-2 ❧ [Excavation Description:] Found at Ayia Irini in 1960 ❧ [Medium:] Clay ❧ [Script Note:] Phoenician ❧ [Physical Object Description:] Round jug white painted IV with spout and inscription on the body of the jug. ❧ [Physical Object Note:] Nine or ten incised letters. Some decoration on body and neck. ❧
DOI: 10.25549/inscriptifact-ouc111124218
title: Business contract, UT 1599-26

description: [Text Description:] Business contract. ❧ [Text or Publication Number Note:] UT 1599-26 ❧ [Excavation Description:] Senkereh ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Large clay tablet, beige center with pink-orange edges. LABEL: "1599" in black ink, "26" in red ink. 7.5 x 5cm.
DOI: 10.15468/dl.9y8jdh
title: Occurrence Download

description: A dataset containing 1700 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Clangula hyemalis (Linnaeus, 1758)",
 "Year 2011-2018"
 ]
}

 The dataset includes 1700 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0172932-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111357151
title: Persepolis Fortification Anepigraphic Tablet 2107.004-008, PFAnep 2107.004-008

description: [Text Description:] Administrative Text with seal ❧ [Text or Publication Number Note:] PFAnep 2107.004-008 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay anepigraphic tablet. Seal impressions on bottom edge, flat edge, obverse, reverse, upper edge. ❧ [Physical Object Note:] Cracks on flat edge, obverse, reverse. Gouge on upper edge.
DOI: 10.25549/inscriptifact-ouc111124260
title: Business contract, UT 1599-26

description: [Text Description:] Business contract. ❧ [Text or Publication Number Note:] UT 1599-26 ❧ [Excavation Description:] Senkereh ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Large clay tablet, beige center with pink-orange edges. LABEL: "1599" in black ink, "26" in red ink. 7.5 x 5cm.
DOI: 10.15468/dl.unssuy
title: Occurrence Download

description: A dataset containing 53459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Capra ibex Linnaeus, 1758, Chionomys nivalis (Martins, 1842))",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 53459 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0168379-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111124230
title: Business contract, UT 1599-26

description: [Text Description:] Business contract. ❧ [Text or Publication Number Note:] UT 1599-26 ❧ [Excavation Description:] Senkereh ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Large clay tablet, beige center with pink-orange edges. LABEL: "1599" in black ink, "26" in red ink. 7.5 x 5cm.
DOI: 10.15468/dl.qvg4de
title: Occurrence Download

description: A dataset containing 9881 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-3119.0",
 "Country is China",
 "Year 1970-2000"
 ]
}

 The dataset includes 9881 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0354397-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.egx6ht
title: Occurrence Download

description: A dataset containing 814 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxya chinensis (Thunberg, 1815)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 814 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009017-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.px7jj4
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nyctimantis siemersi (Mertens, 1937)"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009018-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urg9fq
title: Occurrence Download

description: A dataset containing 416 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anarsia lineatella Zeller, 1839",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 416 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009023-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k6qgy5
title: Occurrence Download

description: A dataset containing 1563 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rauia Nees & Mart."
 ]
}

 The dataset includes 1563 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009016-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p9wq5vf8
title: Lethality of bloom forming cyanobacteria on zebra and quagga mussel veligers

description: Zebra and quagga mussel veligers were exposed to eleven distinct cultures (isolates) of cyanobacteria representing Anabaena, Aphanizomenon, Dolichospermum, Microcystis, and Planktothrix species and the cyanotoxin microcystin to determine the lethality of cyanobacteria on dreissenid veligers. Six-day laboratory bioassays were performed in microplates using dreissenid veligers collected from the Detroit River, Michigan, USA. Veligers were exposed to increasing concentrations of cyanobacteria and microcystin using the green algae Chlorella minutissima as a control. Raw data were fit to dose response curves formulated from a Probit model to calculate LC50 values. This data release presents the raw data summarized and discussed in the manuscript by Boegehold, Johnson, and Kashian to be published by Ecotoxicology and Environmental Safety, 2019.
DOI: 10.15468/dl.e3t95w
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paracoccus marginatus Williams & Granara de Willink, 1992",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 123 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009030-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cq4rdv
title: Occurrence Download

description: A dataset containing 322 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "Continent is South America",
 "CoordinateUncertaintyInMeters is less than or equal to 5000.0",
 "Geometry POLYGON((-80 -20,-50 -20,-50 12,-80 12,-80 -20))",
 "Issue is one of (Coordinate rounded, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate accuracy invalid, Coordinate precision invalid, Coordinate uncertainty meters invalid, Coordinate precision/uncertainty mismatch, Footprint SRS invalid, Footprint WKT mismatch, Footprint WKT invalid, Country mismatch, Country invalid, Country derived from coordinates, Continent coordinate mismatch, Continent country mismatch, Continent derived from country, Continent derived from coordinates, Presumed negated longitude, Recorded date mismatch, Recorded date unlikely, Taxon match fuzzy, Taxon match higher rank, Taxon match aggregate, The scientific name ID was not used in backbone matching, The taxon concept ID was not used in backbone matching, The taxon ID was not used in backbone matching, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, The scientific name differs on the record from that found in the checklist, Taxon match none, The backbone match found using the taxon IDs differs from what would be found if using the scientific names, Depth not metric, Depth unlikely, Depth min max swapped, Depth non numeric, Elevation unlikely, Elevation min max swapped, Elevation not metric, Elevation non numeric, Modified date invalid, Modified date unlikely, Identified date unlikely, Identified date invalid, Basis of record invalid, Type status invalid, Multimedia date invalid, Multimedia URI invalid, References URI invalid, Error during interpretation, Individual count invalid, Individual count conflicts with occurrence status, Occurrence status unparsable, Occurrence status inferred from individual count, ccurrence status inferred from basis of record, Georeferenced date unlikely, Georeferenced date invalid, Ambiguous institution, Ambiguous collection, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch, Possibly on loan, Different owner institution)",
 "TaxonKey is Chelonoidis denticulatus (Linnaeus, 1766)"
 ]
}

 The dataset includes 322 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009032-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15027026
title: ResearchBox 15

description: Automatic backup of ResearchBox zipball
DOI: 10.5281/zenodo.15027027
title: ResearchBox 15

description: Automatic backup of ResearchBox zipball
DOI: 10.6084/m9.figshare.28598129
title: Supplementary files for Singh et al. (2025)

description: Bees are a well-studied group of pollinating insects that vary widely in the number of plants that they collect pollen from. We explored whether specialized and generalized pollen diets were associated with the evolution of three families of olfactory receptor genes, a set of proteins that are crucial components of the peripheral olfactory systems of insects. We found that pollen specialization in bees requires the diversification of existing genes while dietary generalization is associated with losses of odorant receptor genes.
DOI: 10.25345/c5222rj6r
title: MassIVE MSV000097328 - Integrated genomics and proteomics analysis uncovers the oxidative stress role of miR-10b targets in healthy and diabetic human limbal epithelial cells
title: The corneal epithelium is maintained by limbal epithelial stem cells (LESCs) and is largely responsible for corneal optical transparency and protection by continuously renewing population of corneal epithelial cells. Diabetes mellitus (DM) affects all structures of the eye including the cornea, which can result in delayed wound healing and potential vision loss. MicroRNAs (miRNAs) are short non-coding oligonucleotides that regulate various cellular functions, including oxidative stress response, by repressing protein translation. MiR-10b-5p was previously identified to be upregulated in diabetic vs. non-diabetic limbal cells, and our purpose was to understand the role of miR-10b-5p in human limbal epithelial cells in healthy and diabetic conditions. Through integrated transcriptomic and proteomic analyses, we identified GCLM and LANCL1 as key miR-10b-5p targets, revealing its profound impact on glutathione metabolism, sulfur compound biosynthesis processes, and antioxidant defenses. Our findings suggest that overexpression of miR-10b disrupts redox balance, which potentially leads to heightened oxidative stress and increased cellular vulnerability in diabetic corneas. Understanding miR-10b function in corneal epithelial cells may pave the way for novel therapeutic strategies to mitigate oxidative stress and normalize corneal health in diabetic patients.
DOI: 10.15468/dl.pjm68v
title: Occurrence Download

description: A dataset containing 15496 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-120 -60,-25 -60,-25 30,-120 30,-120 -60))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is b3bf3a83-1f68-4541-a03f-330d30d567f5",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 15496 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009033-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgfgdf
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxyporus mexicanus Fauvel, 1865",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009035-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgnbf5
title: Occurrence Download

description: A dataset containing 4703505 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The New York Botanical Garden Herbarium (NY)"
 ]
}

 The dataset includes 4703505 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009026-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28597538
title: Sequence variations identified in Canadian Holstein cows by the method of genotyping-by-sequencing (GBS)

description: Identification of sequence variations (single nucleotide polymorphisms - SNPs) in 1,246 Canadian Holstein cows by the method of genomewide genotyping-by-sequencing (GBS). A total of 515,787 SNPs were identified out of which 76,355 SNPs with call rates greater than 85% and minor allele frequency greater than or equal to 1.5% were used in genome wide association study (GWAS) and for estimates of heritabilities and genetic correlations for various milk traits.
DOI: 10.6084/m9.figshare.28597538.v1
title: Sequence variations identified in Canadian Holstein cows by the method of genotyping-by-sequencing (GBS)

description: Identification of sequence variations (single nucleotide polymorphisms - SNPs) in 1,246 Canadian Holstein cows by the method of genomewide genotyping-by-sequencing (GBS). A total of 515,787 SNPs were identified out of which 76,355 SNPs with call rates greater than 85% and minor allele frequency greater than or equal to 1.5% were used in genome wide association study (GWAS) and for estimates of heritabilities and genetic correlations for various milk traits.
DOI: 10.6084/m9.figshare.28598108
title: Morphometric measurements of cranial cuticular structures and exocrine glands in <i>Nasonia</i> and <i>Trichomalopsis</i> species.

description: The table contains measurement data for morphometric analysis of cranial skeletal and glandular elements for Hoag et al: <b>The cranial gland system of </b><b><i>Nasonia </i></b><b>spp.: a link between chemical ecology, evo-devo and descriptive taxonomy (Hymenoptera: Chalcidoidea).</b><b>Figures for the description below can be accessed from the paper.</b>Cranial morphometrics (gena height, GH, the longest perpendicular anatomical line between gena width (GW) and ventrolateral genal margin; gena width, distance between the median point on the distal margin of the clypeus and the lowest point of the compound eye, head width, HW, longest distance between the lateral eye margins and height of basal mandibular carina, BCH; Figs. 3A, B, Supplementary Fig. 1A, B, Werren et al. 2016) were measured with Fiji using anterior view screenshots of the 3D volume rendered models from 3D Slicer using the slicermorph extension. The volumes of the subcuticular space (scs: Supplementary Fig. 1C, D) were measured using 3D slicer image segmentations and Quantification/Segment Statistics (Labelmaps statistic) modules. Overall gland volume was impossible to measure as, in most cases, we were not able to differentiate gland cells from the adjacent fat body tissues (Fig. 7D–H). Volumes were calculated in Microsoft Excel by summing the surface area of each gland outline and then multiplying this value by the slice spacing of 1.22 μm. SCV, FE, BCH were standardized with HW as a body-size proxy (Ohl and Thiele 2007) and analyzed using a Kruskal-Wallis non-parametric ANOVA and Spearman’s rank correlation.
DOI: 10.15468/dl.wft9zk
title: Occurrence Download

description: A dataset listing the 8 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-0.8 50.9,-0.7 50.9,-0.7 51,-0.8 51,-0.8 50.9))",
 "HasCoordinate is true",
 "TaxonKey is one of (Myotis daubentonii (Kuhl, 1817), Myotis mystacinus (Kuhl, 1817), Cervus elaphus Linnaeus, 1758, Asio otus (Linnaeus, 1758), Triturus cristatus (Laurenti, 1768), Bufo bufo (Linnaeus, 1758), Pipistrellus pipistrellus (Schreber, 1774), Meles meles (Linnaeus, 1758), Lutra lutra (Linnaeus, 1758), Araneus diadematus Clerck, 1757, Erinaceus europaeus Linnaeus, 1758, Apodemus sylvaticus (Linnaeus, 1758), Cornu aspersum (O.F.Müller, 1774), Lampyris noctiluca (Linnaeus, 1758), Strix aluco Linnaeus, 1758)",
 "Year 2013-2015"
 ]
}

 The dataset's 8 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009020-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14191920
title: RECON - Cell-scale atmospheric moisture flows dataset reconciled with ERA5 reanalysis

description: The RECON dataset provides moisture flow volumes, in cubic meters, from evaporation sources to precipitation targets and vice versa. It offers global coverage at a resolution of 0.5° for an average year based on the period 2008–2017. It is a post-processed version of the Lagrangian (forward trajectory-based) tracking model UTrack dataset (DOI UTrack dataset: 10.1594/PANGAEA.912710, DOI Utrack support paper: 10.5194/essd-12-3177-2020), by means of Iterative Proportional Fitting procedure and ERA5 preprocessing.Data are stored in integers that need to be transformed into cubic meters, as explained in the supplement material pdf file. More information on the generation of the dataset, authors of the dataset, input variable information and data extraction with simple python scripts are provided in our official GitHub repository.

We provide the following files:



RECON_moisture_flows_0.5.nc.7z: is a compressed/packed version of the NetCDF4 RECON dataset. To get the NetCDF dataset file, follow the instructions in the supplement material pdf file

ERA5_m_0.5_volumes_corrected.nc where m is the month: our own edited version of monthly averaged ERA5 data, that have been used to retrieve moisture volume flows from the Utrack dataset, as explained in our official GitHub repository

RECON_ERA5_avgYear_0.5_volumes.nc: our own edited version of yearly averaged ERA5 data, that have been used to postprocess moisture volume flows retrieved from the UTrack dataset in order to get the RECON dataset, as explained in our official GitHub repository


By sharing these ERA5 files, we provide means for reproducibility of our postprocessing framework.
DOI: 10.5281/zenodo.15025813
title: RECON - Cell-scale atmospheric moisture flows dataset reconciled with ERA5 reanalysis

description: The RECON dataset provides moisture flow volumes, in cubic meters, from evaporation sources to precipitation targets and vice versa. It offers global coverage at a resolution of 0.5° for an average year based on the period 2008–2017. It is a post-processed version of the Lagrangian (forward trajectory-based) tracking model UTrack dataset (DOI UTrack dataset: 10.1594/PANGAEA.912710, DOI Utrack support paper: 10.5194/essd-12-3177-2020), by means of Iterative Proportional Fitting procedure and ERA5 preprocessing.Data are stored in integers that need to be transformed into cubic meters, as explained in the supplement material pdf file. More information on the generation of the dataset, authors of the dataset, input variable information and data extraction with simple python scripts are provided in our official GitHub repository.

We provide the following files:



RECON_moisture_flows_0.5.nc.7z: is a compressed/packed version of the NetCDF4 RECON dataset. To get the NetCDF dataset file, follow the instructions in the supplement guide (RECON_supplementary_guide.pdf)

ERA5_m_0.5_volumes_corrected.nc where m is the month: our own edited version of monthly averaged ERA5 data, that have been used to retrieve moisture volume flows from the Utrack dataset, as explained in our official GitHub repository

RECON_ERA5_avgYear_0.5_volumes.nc: our own edited version of yearly averaged ERA5 data, that have been used to postprocess moisture volume flows retrieved from the UTrack dataset in order to get the RECON dataset, as explained in our official GitHub repository


By sharing these ERA5 files, we provide means for reproducibility of our postprocessing framework.