cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16275416
title: Accurately predicting solubility curves via a thermodynamic cycle, machine learning, and solvent ensembles

description: The datasets and supplementary materials for the manuscript "Accurately predicting solubility curves via a thermodynamic cycle, machine learning, and solvent ensembles" by Emad Al Ibrahim, Nathan Morgan, Simon Muller, Saikiran Motati, and William H. Green.

The files include compiled data for solubility, logP, enthalpy of fusion, melting point, and activity coefficients.

*Note that only the data approved for public release is shared here.

Description:dHfus_DB.csv: Enthalpy of fusion data - used for training/validationTmp_DB.csv: Melting point temperature data - used for training/validationDrug_like_molecules: Folder containing the drug-like solutes added to gamma_QM_DBgamma_QM_DB: Activity coefficient data from COSMO-RS - used for training/validationlogP: Folder containing logP datasets used for testing (OPERA, SAMPL6, and SAMPL7)Solubility: Folder containing solubility datasets used for testing - all_solubility.csv is the data from 15 datasets, and BiggerSolDB is the combination shared both with and without Zwitterions
DOI: 10.6084/m9.figshare.29815145
title: Cholera dataset.ast.linelist.gps

description: This study investigated a cholera outbreak affecting two neighboring districts (Rumphi and Mzimba) in the Northern Malawi. The aim of the investigation was to establish the antibiotics resistance pattern of V. cholerae and determine geographical distribution of cases as well as environmental risk factors. To achieve that, we obtained laboratory data, line listing data and also captured case specific coordinates for mapping cases and risk factors. Graphs and tales were plotted to summarize the findings.
DOI: 10.6084/m9.figshare.29815145.v1
title: Cholera dataset.ast.linelist.gps

description: This study investigated a cholera outbreak affecting two neighboring districts (Rumphi and Mzimba) in the Northern Malawi. The aim of the investigation was to establish the antibiotics resistance pattern of V. cholerae and determine geographical distribution of cases as well as environmental risk factors. To achieve that, we obtained laboratory data, line listing data and also captured case specific coordinates for mapping cases and risk factors. Graphs and tales were plotted to summarize the findings.
DOI: 10.15468/dl.dqa4xc
title: Occurrence Download

description: A dataset containing 1400 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cyprinella galactura)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1400 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093231-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urkwzr
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ACB5543"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093233-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k7yu6w
title: Occurrence Download

description: A dataset containing 527 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eleothreptus anomalus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 527 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093235-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xyd6wt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Guilleminea densa",
 "Country is Eswatini",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093234-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pjkev9
title: Occurrence Download

description: A dataset containing 474 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Angiopteris evecta",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 474 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093236-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29815130
title: Figure 1 GSE13911.xlsx

description: COL12A1, a collagen type XII alpha 1 chain, has an instrumental role in the extracellular matrix (ECM), but its effect on gastric cancer (GC) and clinical significance remain unclear. In this study, co-expressed differentially expressed genes (co-DEGs) were identified using Venn diagrams based on datasets from The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) for gastric cancer RNA sequencing. Intersections between co-DEGs and TCGA prognosis-related genes were used to pinpoint genes that were differentially associated with prognosis. COL12A1 emerged as a key candidate gene. We analyzed COL12A1 expression in human GC tissues and explored its association with various clinicopathological parameters. Survival analysis, including overall survival (OS) and disease-free survival (DFS), was conducted using TCGA data, and a prognostic nomogram was constructed. The relative protein-encoding gene expression was assessed via immunohistochemistry (IHC) analysis of four downloaded datasets, along with PCR experiments. COL12A1-related DEGs were further identified using the LinkedOmics database, followed by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. Multiple databases were analysed for the relationship between COL12A1 and methylation. Immune cell infiltration was evaluated through CIBERSORT and TIMER databases, revealing a strong correlation between COL12A1 expression and immune cell presence in the tumor microenvironment. Single-cell expression analysis using TISCH provided further insights into the cellular context of COL12A1 expression. TISCH was used to analyse the single-cell expression of COL12A1. Finally, this work examined the correlation of COL12A1 with drug sensitivity via the RNAactDrug database. COL12A1 overexpression in gastric cancer was detected and found to be closely related to clinicopathological features. GO/KEGG functional enrichment analysis revealed that COL12A1 was associated with pathways such as extracellular structure organization, extracellular matrix organization and the collagen-containing extracellular matrix. Analysis of several databases revealed that COL12A1 was associated with gene mutation and methylation. Additionally, as revealed by CIBERSORT profiling and TIMER database analysis, COL12A1 expression is related to immune cell infiltration. Correlation analysis via the RNAactDrug website revealed that COL12A1 is associated with drug sensitivity. In conclusion, COL12A1 is significantly overexpressed in gastric cancer and is associated with tumor progression, immune infiltration, and drug sensitivity. These findings suggest that COL12A1 may serve as a potential diagnostic and therapeutic biomarker for gastric cancer.
DOI: 10.6084/m9.figshare.29815130.v1
title: Figure 1 GSE13911.xlsx

description: COL12A1, a collagen type XII alpha 1 chain, has an instrumental role in the extracellular matrix (ECM), but its effect on gastric cancer (GC) and clinical significance remain unclear. In this study, co-expressed differentially expressed genes (co-DEGs) were identified using Venn diagrams based on datasets from The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) for gastric cancer RNA sequencing. Intersections between co-DEGs and TCGA prognosis-related genes were used to pinpoint genes that were differentially associated with prognosis. COL12A1 emerged as a key candidate gene. We analyzed COL12A1 expression in human GC tissues and explored its association with various clinicopathological parameters. Survival analysis, including overall survival (OS) and disease-free survival (DFS), was conducted using TCGA data, and a prognostic nomogram was constructed. The relative protein-encoding gene expression was assessed via immunohistochemistry (IHC) analysis of four downloaded datasets, along with PCR experiments. COL12A1-related DEGs were further identified using the LinkedOmics database, followed by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. Multiple databases were analysed for the relationship between COL12A1 and methylation. Immune cell infiltration was evaluated through CIBERSORT and TIMER databases, revealing a strong correlation between COL12A1 expression and immune cell presence in the tumor microenvironment. Single-cell expression analysis using TISCH provided further insights into the cellular context of COL12A1 expression. TISCH was used to analyse the single-cell expression of COL12A1. Finally, this work examined the correlation of COL12A1 with drug sensitivity via the RNAactDrug database. COL12A1 overexpression in gastric cancer was detected and found to be closely related to clinicopathological features. GO/KEGG functional enrichment analysis revealed that COL12A1 was associated with pathways such as extracellular structure organization, extracellular matrix organization and the collagen-containing extracellular matrix. Analysis of several databases revealed that COL12A1 was associated with gene mutation and methylation. Additionally, as revealed by CIBERSORT profiling and TIMER database analysis, COL12A1 expression is related to immune cell infiltration. Correlation analysis via the RNAactDrug website revealed that COL12A1 is associated with drug sensitivity. In conclusion, COL12A1 is significantly overexpressed in gastric cancer and is associated with tumor progression, immune infiltration, and drug sensitivity. These findings suggest that COL12A1 may serve as a potential diagnostic and therapeutic biomarker for gastric cancer.
DOI: 10.15468/dl.sbdquw
title: Occurrence Download

description: A dataset containing 7933 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydrocotyle ranunculoides",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7933 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093237-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wu8ch2
title: Occurrence Download

description: A dataset containing 4211 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Petasites pyrenaicus",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4211 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093238-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3z3bhe
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Guilleminea densa",
 "Country is Lesotho",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093239-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cuyd79
title: Occurrence Download

description: A dataset containing 72886 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Electron platyrhynchum)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 72886 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093210-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfuc6n
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aves)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-76.3688774060911 3.85489100395481,-76.3673405934559 3.85489100395481,-76.3673405934559 3.85642389095224,-76.3688774060911 3.85642389095224,-76.3688774060911 3.85489100395481))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093240-250717081556266/datasets/export for details.
DOI: 10.15468/dl.nvzgtr
title: Occurrence Download

description: A dataset containing 169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eleoscytalopus psychopompus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 169 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093243-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8kjxy
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Moenkhausia pittieri)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093241-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k2bymr
title: Occurrence Download

description: A dataset containing 246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Guilleminea densa",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 246 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093244-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rg9bz8
title: Occurrence Download

description: A dataset containing 414 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nephrolepis brownii",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 414 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093245-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ntzqjt
title: Occurrence Download

description: A dataset containing 4244 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydrocotyle ranunculoides",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4244 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093246-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zb3ur6
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senecio viscosus",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 51 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093247-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9p96bt
title: Occurrence Download

description: A dataset containing 4253 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aves)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-67.619064481517 -54.9375119322014,-67.5939802426285 -54.9375119322014,-67.5939802426285 -54.9324998771106,-67.619064481517 -54.9324998771106,-67.619064481517 -54.9375119322014))"
 ]
}

 The dataset includes 4253 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093249-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5jxmej
title: Occurrence Download

description: A dataset containing 4603 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Elminia albicauda)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 4603 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093248-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.an8ffz
title: Occurrence Download

description: A dataset containing 981 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Elminia albiventris)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 981 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093250-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uwqry3
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Panaqolus albomaculatus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 20 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093251-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.epdbwj
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drymaria cordata",
 "Country is Angola",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093252-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2m22s4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drymaria cordata",
 "Country is Antigua and Barbuda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093253-250717081556266/datasets/export for details.
DOI: 10.15468/dl.3gddtb
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cornus alba",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093255-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hakfxe
title: Occurrence Download

description: A dataset containing 2063 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pteris vittata",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2063 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093254-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gtp5g7
title: Occurrence Download

description: A dataset containing 290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eleothreptus candicans)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 290 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093257-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.724qxf
title: Occurrence Download

description: A dataset containing 1214 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rorippa austriaca",
 "Country is Germany",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1214 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093256-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14184222
title: Data and code for Decoding dynamic landslide hazard processes for a massive refugee camp (KTP) in Bangladesh

description: The codes have been implemented using R 4.4.0. Landslide priority zonation using Monte Carlo simulation is implemented in Google Colab.

A Dynamic Landslide Hazard Assessment has been conducted using a Generalized Additive Model (GAM). The results of the GAM are also compared with standard machine learning algorithms (MLs): NNET, RF, LDA, xgBoost, and SVM.

The code is jointly developed by Dewan Haque and Ritu Roy, with collaboration from many others. The GAM code is an update from the study published by Zhice, F. (2023), https://doi.org/10.5281/zenodo.10395153, adapted to apply it across settings. The ML code has been developed from scratch.

The required data from intensive fieldwork and satellite image analysis is uploaded here to reproduce the results. Additionally, R Markdown files are provided.

The ReadMe file here, as well as on GitHub, will be useful for further instructions.

GitHub Link: https://github.com/Dewan-cpu/Decoding-Landslide-Hazard-Assessment