cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1599797.v1
title: BioSharing: examples of use in NIH BD2K CEDAR, BioCADDIE and ELIXIR

description: BioSharing (http://www.biosharing.org) is a curated, web-based, searchable portal of over 1,300 records describing content standards, databases and data policies in the life sciences, broadly encompassing the biological, natural and biomedical sciences. Among many features, the records can be searched and filtered, or grouped via the ‘Collection’ feature according to field of interest. An example is the Collection curated with the NIH BD2K bioCADDIE project, for various purposes. First, to select and track content standards that have been reviewed during the creation of the metadata model underpinning the Data Discovery Index. Second, as the work progresses and the prototype Index harvests dataset descriptors from different databases, the Collection will be extended to include the descriptions of these databases, including which (if any) standards they implement. This is key to support one of the bioCADDIE project use cases: to allow the searching and filtering of datasets that are compliant to a given community standard. Despite a growing set of standard guidelines and formats for describing their experiments, the barriers to authoring the experimental metadata necessary for sharing and interpreting datasets are tremendously high. Understanding how to comply with these standards takes time and effort and researchers view this as a burden that may benefit other scientists, but not themselves. To tackle this, with and for the NIH BD2K CEDAR project, we will explore methods to serve machine-readable versions of these standards that can inform the creation of metadata templates, rendering standards invisible to the researchers and driving them to strive for easier authoring of the experimental metadata. Lastly, as part of the ELIXIR-UK Node BioSharing is being developed to be the ELIXIR Standards Registry and will be progressively cross-linked to other registries, such as the ELIXIR Tools and Services Registry and the ELIXIR Training e-Support System (TeSS).
DOI: 10.6084/m9.figshare.3517424.v1
title: Appendix A. Expanded model parameterization methods.

description: Expanded model parameterization methods.
DOI: 10.17632/jpr6zghy8w
title: Normograma histórico de políticas públicas y marco regulatorio sobre innovación y Compra Pública de Innovación (CPI) en Colombia (1990–2025)

description: Este conjunto de datos recoge, ordena y analiza las principales normas, políticas públicas y disposiciones regulatorias emitidas en Colombia entre 1990 y 2025, relacionadas con la ciencia, tecnología, innovación y específicamente con la Compra Pública de Innovación (CPI). Incluye documentos CONPES, leyes, decretos y circulares, cada uno con un análisis sobre su impacto o relación con la CPI.
DOI: 10.17632/shvsvy6rwx
title: Dataset on the Moderating Effect of Corruption Perception Index on Capital Structure of Listed Companies in Indonesia, Malaysia and Singapore (2012-2023)

description: his dataset analyzes the moderation effect of the Corruption Perception Index (CPI) on the capital structure of companies in Indonesia, Malaysia, and Singapore (2012-2023). It includes economic indicators (GDP per capita, inflation) and corporate financial metrics (debt-to-equity ratio, firm size). The results highlight that Singapore has the best financial stability, Malaysia demonstrates moderate stability, and Indonesia shows high growth potential but with financial volatility. This dataset is valuable for understanding the relationship between governance, corruption perception, and corporate financial decisions in Southeast Asia.
DOI: 10.17632/xs9sx3sf9c
title: Supplementary file 4, Expression level shown as FPKM (Fragments Per Kilobase of transcript/gene per Million mapped reads)

description: This study focuses on understanding how plants, specifically Arabidopsis thaliana, respond to two major pollutants, lead (Pb) and vanadium (V) found in oil contaminated land. While the effects of these pollutants on animals are well-studied, their impact on plants is not as clear. To fill this gap, we exposed Arabidopsis seedlings to Pb and V and analyzed the changes in gene expression using advanced sequencing and validated the data using RT PCR technique.
The results showed that exposure to Pb and V led to significant changes in gene expression in Arabidopsis seedlings compared to untreated samples. Through Gene Ontology and pathway analysis, we identified several biological processes and pathways associated with the differentially expressed genes. Overall, this investigation sheds light on the molecular mechanisms underlying the toxicity and tolerance of Arabidopsis to Pb and V, providing valuable insights into how plants respond to heavy metal stress.
DOI: 10.6084/m9.figshare.28279913.v3
title: <i>Ganoderma lingzhi</i> genome

description: <i>灵芝</i>基因组测序、组装和注释
DOI: 10.17632/hxbtv2w2wz
title: Assessment of irrigation water productivity in Mkoba Scheme in Midlands Province and Silalatshani Scheme in Matebeleland South Province, Zimbabwe

description: Field measurements were done to quantify amount of irrigation water being applied. Data on yields harvested, amount of water being received from reservoir(s) and planting times was gathered from records of farmers and Departments of Irrigation and Agricultural Extension Services (AGRITEX). Average climatic conditions and crop water requirements were estimated using CLIMWAT 2.0 and CROPWAT 8.0. Data analysis was done using equations as well as Microsoft excel and Statistical Package for Social Sciences (SPSS) version 23 to produce tabulations, descriptions and graphs. Substantial water losses, in both Mkoba Irrigation Scheme and Silalatshani Irrigation Scheme due to the dilapidated irrigation infrastructure, were noted. Maize crop productivity was low, ranging below 50% of the national expected yield of 10-13 tonnes/ha. The collected data further indicated that physical water productivity for maize, beans and wheat was 1.1 kg/m3, 0.54 kg/m3 and 0.87 kg/m3 respectively in Mkoba Irrigation Scheme. Mkoba Irrigation Scheme had higher physical water productivity compared to Silalatshani Irrigation Scheme which had 0.35 kg/m3 for maize, 0.28 kg/m3 for beans and 0.45 kg/m3 for wheat. This suggests that shortages of water under gravity-fed smallholder irrigation increases water productivity as farmers would be conserving it more compared to a situation where the water would be in full supply. In Silalatshani Irrigation Scheme, the economic water productivity for maize was US$0.13/m3, US$0.42/m3 for beans and US$0.23/m3 for wheat. Water productivity was low in both irrigation schemes given the physical water productivity range of 0.3 – 2.0 kg/m3 for maize.
DOI: 10.17632/t4hjn28b2s
title: Data for: Vulnerability of Gubernatrix cristata to climate change, anthropogenic pressures, and hybridization threats

description: In this study, using the endangered yellow cardinal (Gubernatrix cristata) as a representative case, we develop a universally applicable framework for assessing extinction risks, incorporating the impacts of climate change, anthropogenic pressures, and biotic interactions. 
This dataset contains primary data for published results. It includes calibration areas, scripts and records to obtain estimations of geographic distributions through ecological niche modeling techniques. Averages models’ outputs and a protected areas layer are also provided for post processing analysis.
DOI: 10.17632/vksgs9c53v
title: SSTIR test dataset 1 - 1MB -uer3

description: test
DOI: 10.6084/m9.figshare.23732223.v1
title: MATLAB Figure Files

description: The .zip file contains data from Carreon A. et. al. "Simulating Radiative Heat Transfer...", stored in MATLAB figure files (.fig extension) with file names corresponding to the figures in the paper.
DOI: 10.6084/m9.figshare.3142321.v1
title: TDRI_dataset.csv

description: The current dataset was published by Golino and Gomes (2015). It presents data from 1,803 Brazilians (52.5% female) with age varying from 5 to 85 years (M = 15.75; SD = 12.21) that answered to the Inductive Reasoning Developmental Test – IRDT (3rd version; Golino & Gomes, 2015), a pencil-and-paper instrument with 56 items designed to assess developmentally sequenced and hierarchically organized inductive reasoning.. The sequence of IRDT items was constructed to measure seven developmental stages based on the Model of Hierarchical Complexity (Commons & Richards, 1984; Commons & Pekker, 2008) and on Fischer’s Dynamic Skill Theory (Fischer, 1980; Fischer & Yan, 2002), two neo-Piagetian theories of development. Golino and Gomes (2015) showed that two structures can be used to describe the IRDT items. The first one is a seven correlated factors model [χ<sup>2</sup> (1463) = 764,28; p = 0,00; CFI = 1,00; RMSEA = 0,00; NFI = 0,99; NNFI = 1,00], in which each factor represents one stage and explains a group of eight items. The other is a bifactor (Schimid-Leiman) model with seven specific first order factors, each one representing one stage and explaining a group of eight items, plus a general first order factor directly explaining the IRDT’s 56 items [χ<sup>2</sup> (1428) = 2768,36; p = 0,00; CFI = 0,98; RMSEA = 0,04; NFI = 0,95; NNFI = 0,98]. The authors showed that both models are not significantly different, via the Satorra and Bentler’s (2001) scaled chi-square test [Δχ² = -99.87; ΔDF = 35; p = 1].<br>Reference: Golino, H. F., & Gomes, C. M. (2015). Investigando estágios de desenvolvimento do raciocínio indutivo usando a análise fatorial confimatória, o Modelo Logístico Simples de Rasch e o modelo de teste logístico linear (Rasch Estendido). In H. F. Golino, C. M. Gomes, A. Amantes, & G. Coelho, Psicometria Contemporânea: Compreendendo os Modelos Rasch (pp. 283-331). São Paulo: Casa do Psicólogo/Pearson.<br>
DOI: 10.6084/m9.figshare.17012945.v1
title: velocitystructure.zip

description: Velocity structure (Beijing Tongzhou). (by Multi-mode Surface wave inversion)
DOI: 10.17632/ffwdk973pn
title: Data for: Efficient enrichment of Rb during the magmatic-hydrothermal transition in a highly evolved granitic system: implications from mica chemistry of the Tiantangshan Rb-Sn-W deposit

description: Data for: Efficient enrichment of Rb during the magmatic-hydrothermal transition in a highly evolved granitic system: implications from mica chemistry of the Tiantangshan Rb-Sn-W deposit
DOI: 10.6084/m9.figshare.22259452.v2
title: Supplemental Table 4: Enriched GO Terms in Moderate CH

description: Significant (P.adj.&lt;0.05) GO terms were identified with Gene Ontology enrichment analysis (R package: gProfiler2). “Gene” column lists the DEGs that were annotated to each enriched GO term. Coloring of each individual gene represents fold change values (Red, Upregulated; Blue, Downregulated).
DOI: 10.6084/m9.figshare.6442796.v2
title: Data on forest regeneration after catastrophic windthrow in the headwater region of the Ishikari River, Hokkaido, Japan

description: Details of the data are described in:ITÔ,Hiroki; NAKANISHI, Atsushi; TSUYAMA, Ikutaro; SEKI, Takeshi, IIDA, Shigeo; KAWAHARA, Takayuki (2018) Data on forest regeneration after catastrophic windthrow in the headwater region of the Ishikari River, Hokkaido, Japan. Bulletin of FFPRI 17: 265–272 (in Japanese with English summary).<br>Table S1.txt: Tab delimitated text file (UTF-8, LF) containing the temporal changes in vegetation. The structure is as follows:<br>Field name: DescriptionBelt: Numerical identifier of the study belt.Quadrat: Numerical identifier of the quadrat in each belt.Layer: Position in vertical layer (canopy, subcanopy, shrub, herb, vine, moss).Year: Survey year; The survey of Belt [38] in 1988 was conducted in 1989 in real.Date: Survey date; If the month or day was unclear, this filed is described up to the year or month, respectively.Scientific_name: Scientific name of the species.Japanese_name: Japanese name of the species.Cover: Rank of the vegetation coverage (+: 0–0.01, 1: 0.01–0.1, 2: 0.1–0.25, 3: 0.25–0.5, 4: 0.5–0.75, 5: 0.75–1).<br>Table S2: Tab delimitated text file (UTF-8, LF) containing the temporal changes in trees. The structure is as follows:<br>Field name: DescriptionID: Numerical identifier of the stem.Individual_ID: Numerical identifier of the individual.Belt: Numerical identifier of the survey belt.X: Location along the X axis in the belt (m).Y: Location along the Y axis in the belt (m).Scientific_name: Scientific name of the species.Japanese_name: Japanese name of the species.First: The first year that the stem was observed.Last: The last year that the stem was observed alive; for living stems, the last survey year is assigned to this field.H_1993: Height at 1993 (m); NA for missing data.D_1993: Diameter at breast height in 1993 (cm).H_1998: Height at 1998 (m); NA for missing data.D_1998: Diameter at breast height in 1998 (cm).H_2002: Height at 2002 (m).D_2002: Diameter at breast height in 2002 (cm).H_2009: Height at 2009 (m); NA for missing data.D_2009: Diameter at breast height in 2009 (cm).H_2017: Height at 2017 (m).D_2017: Diameter at breast height in 2017 (cm).<br>
DOI: 10.6084/m9.figshare.21431712.v2
title: Data compilation and modelling in R code for Tatnell et al GRL paper https://doi.org/10.1029/2023GL103525

description: Data for for paper "Porphyry copper deposit formation: identifying garnet and amphibole fractionation with REE pattern curvature modeling"
DOI: 10.17632/b39w832tb2
title: Data of Psychophysiological responses to eye contact with a humanoid robot: Impact of perceived intentionality

description: Data for the statistical analyses of an upcoming paper Psychophysiological responses to eye contact with a humanoid robot: Impact of perceived intentionality. The Excel file contains metadata in notes as well as a participant info table.
DOI: 10.17632/gps9kx46kg
title: Replication data for "The Empire Project: Trade Policy in Interwar Canada"

description: This zip file contains the replication data for "The Empire Project: Trade Policy in Interwar Canada", forthcoming Journal of International Economics
DOI: 10.17632/pwfxgzz5fj
title: A dataset of stem bark reflectance spectra for boreal and temperate tree species

description: The collection and preprocessing of this dataset has been reported in detail in Juola J., Hovi A., Rautiainen M., 2022. A spectral analysis of stem bark for boreal and temperate tree species. Ecology and Evolution. DOI:10.1002/ece3.8718

The dataset includes stem bark reflectance spectra of ten boreal and temperate tree species. We measured hemispherical-directional reflectance factors (HDRF) of stem bark samples. The data were measured using a Specim IQ imaging spectrometer attached to a tree mounting setup. The imaging spectrometer operates in the visible and near-infrared wavelength region (400–1000 nm). The measurements were made in the Greater Helsinki area in Finland, and in Järvselja in Estonia.  We measured 20 trees per species, accounting to a total of 200 unique stem bark samples. One sample refers to a hyperspectral reflectance image taken of a single tree stem. The 200 mean spectral signatures (presented in this dataset) were calculated for each sample by averaging the HDRF values over all pixels per wavelength. The measurements were conducted from May to August 2020. All measurements were made under natural illumination conditions and the images were taken in perpendicular view-angle to the tree stem. The dataset includes two tabular files that contain: 1) the mean reflectance spectrum for each of the ten common boreal and temperate tree species (calculated from the 20 samples per species), and 2) all 200 reflectance spectra (20 per tree species). The sampled species were: Scots pine (Pinus sylvestris L.), Norway spruce (Picea abies (L.) Karst), silver birch (Betula pendula Roth), grey alder (Alnus incana (L.) Moench), black alder (Alnus glutinosa (L.) Gaertn.), English oak (Quercus robur L.), European aspen (Populus tremula L.), European ash (Fraxinus excelsior L.), Norway maple (Acer platanoides L.), and littleleaf linden (Tilia cordata Mill.).

The two spreadsheets are organized as follows: first three rows that start with hashtag (#) contain comments for citing, first column "tree_species" (Pinus_sylvestris, Picea_abies, Betula_pendula...) indicates the tree species, and the subsequent columns "wl397.32"-"wl1003.58" indicate the measured HDRF value at that wavelength. The encoding of the csv file is UTF-8. 

The data in file "mean_tree_species_stem_bark_reflectance_spectra_Juola_et_al_2021.csv" is the same as what can be found in Version 1. We only changed the first row's naming to make it clearer.

If you use this dataset, please cite Juola et al. [1,2]:
[1] Juola J., Hovi A., Rautiainen M., 2022. A spectral analysis of stem bark for boreal and temperate tree species. Ecology and Evolution. DOI:10.1002/ece3.8718
[2] Juola J., Hovi A., Rautiainen M., 2022. A dataset of stem bark reflectance spectra for boreal and temperate tree species. Mendeley Data, V2, doi: 10.17632/pwfxgzz5fj.2
DOI: 10.6084/m9.figshare.6938354.v1
title: aadacl1_aadacl2_nceh1a alignment

description: This alignment has been used to reconstruct the phylogeny shown in Fig. S1 of the manuscript.
DOI: 10.17632/yvyg69rb7r
title: Data for: Enhanced chemical weathering of albite under seawater conditions and its potential effect on the Sr ocean budget

description: Experiments raw data
DOI: 10.17632/4kkxxh4h8h
title: Datacenter electricity forecasts

description: Datacenter electricity consumption simulation outcomes
DOI: 10.6084/m9.figshare.24347359.v1
title: Supplementary Material for: Tuberculosis case detection and guideline adherence among child contacts in Switzerland: a retrospective observational study.

description: Background: Children exposed to a tuberculosis (TB) index case are at high risk of TB infection and disease. The aim of this study was to describe the proportion of child contacts who developed TB infection or disease after exposure, to assess the diagnostic pathways and adherence to current guidelines. Method: Retrospective observational study including children ≤ 16 years of age who had contact to a TB index case between January 2019 and July 2021. Analysis was stratified by age groups 0 to 4, 5 to 11 and 12 to 16 years. Results: Of 401 TB-exposed children, data were available for 380 (95%). Of those, 7 (2%) were diagnosed with TB disease and 35 (8%) with TB infection. We identified several deviations in the procedures compared to Swiss guidelines: In the children aged 0 to 4 years, only 82% were examined with an immunodiagnostic test or a chest radiography within two weeks after last contact. Recommended prophylactic treatment was prescribed in 66% of the children only. In the children aged 5 to 11 years, 64% were tested with an immunodiagnostic test in a first examination and 75% in a second examination, two weeks and two months after last contact, respectively. Conclusions: Contact investigations of children exposed to a TB index case identified a significant proportion of children with TB infection and disease in a low TB incidence setting. We observed significant deviations from the guidelines in the contact investigations suggesting the need for improved implementation.
DOI: 10.6084/m9.figshare.24926682.v1
title: Medical-Human-Pose dataset

description: The Medical-Human-Pose dataset contains 3752 depth images of people standing, sitting, lying, and falling in medical scenarios (laboratory simulations). For each image, the location of 15 human body parts are labeled with 3-dimensional (x,y,z) coordinates relative to the sensor position, the 4 vertex positions of the human target surround box are labeled as two-dimensional (x,y) coordinates.
DOI: 10.17632/hnwrxg8zm8
title: REMP: A Unique Dataset of Rare and Endangered Medicinal Plants in Bangladesh

description: In Bangladesh, there are significant number of medicinal plants, but currently no comprehensive record of these valuable species is publicly available. Alarmingly, some of these plants are in a precarious state of endangerment. Therefore, we are creating a unique dataset of Bangladesh's rare, endangered, and threatened medicinal plants to support conservation efforts. It will help us to track and conserve endangered plant species, ensuring a more organized approach to research and preservation efforts. We conducted on-site visits to the National Botanical Garden and The Government Unani and Ayurvedic Medical College, capturing photographs of these plants in optimal sunlight conditions at various times of the day. This involved fieldwork, detailed image annotations, dataset organization, diversity augmentation, and contribution to the preservation of our natural heritage. We have collected a total of 16 types of rare and endangered medicinal plant leaf photos to create our unique dataset consisting of a total of 3494 images. This dataset will help researchers in biodiversity conservation through building efficient machine learning models and applying advanced machine learning techniques to identify rare and endangered medicinal plants.
DOI: 10.17632/thc2zz3zv6
title: Supplementary appendix for "Factors associated with interstitial lung disease and disease-related death in dermatomyositis"

description: Supplementary appendix for "Factors associated with interstitial lung disease and disease-related death in dermatomyositis"
DOI: 10.17632/3jxmmfzhyp
title: Mindfulness and Economic Preferences

description: Survey data collected in the spring of 2022 on mindfulness measures and meditation practices of 650 U.S. adults. Data also collected on demographics, risk and time preferences, financial literacy, impulsivity, trust, and personality traits.
DOI: 10.17632/w58d5v2yx6
title: WE CARE: EFFORTS TO REDUCE THE POTENTIAL OF FATHERLESS WHICH CORRELATES WITH CASES OF CHILD GROOMING

description: Korelasi antara fenomena fatherless dengan kasus child grooming dan usaha untuk mencegahnya.
DOI: 10.6084/m9.figshare.17211920.v1
title: Nature-based solutions catalogue for river landscapes

description: Nature-based solutions (NBS) are recognized as promising actions to alleviate societal challenges and achieve the United Nation’s Sustainable Development Goals (SDGs). However, still confusion exists on which actions can be considered as NBS and how to downscale global SDGs into local actions. The objective of this NBS catalogue is i) to put forward a common vocabulary towards more operational rigor of the NBS concept by making actions explicit that can be considered as NBS and ii) to demonstrate how to consider sub-national contexts in the achievement of the SDGs with NBS by showcasing NBS multifunctionality and potentials to address multiple development goals. The NBS catalogue was developed within the PlanSmart project to support a sustainable development of the Lahn river landscape with NBS. It contains 650 NBS grouped into 30 key type measures (EU KTM classification system). For 38 NBS their ecological impacts, associated changes in ecosystem services and links to policy goals were documented. Further details on the methodological approach of creating the catalogue can be found in Schmidt et al. 2022 (https://doi.org/10.1016/j.jenvman.2022.114696).The NBS catalogue is provided in two different file formats: i) as a Microsoft Excel file and ii) as two tabstopp-TXT files (data and legend). <br>
DOI: 10.6084/m9.figshare.7835240.v1
title: Unraveling Hawking radiation

description: Abstract In the classical theory of general relativity black holes can only absorb and not emit particles. However it is shown that quantum mechanical effects cause black holes to create and emit particles as if they were hot bodies with temperature proportional to κ, the surface gravity of the black hole. This paper has the main goal to unraveling Hawking radiation, for spherically symmetric collapse, serving as motivation and support to introductory studies in quantum field theory in curved space-times.