cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5ht2gq9r
title: MassIVE MSV000098946 - Tseng POST-SCD Enriched Whole Blood Label-Free Proteomics
title: Whole Blood collected from POST-SCD victims, enriched serum fraction.
DOI: 10.5281/zenodo.17722381
title: Raman spectroelectrochemistry for operando characterization of redox flow batteries

description: Dataset for the results shown in the publication "Raman spectroelectrochemistry for operando characterization of redox flow batteries"
DOI: 10.15468/dl.dvk4cq
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gloydius liupanensis)",
 "DecimalLatitude is greater than or equal to 0",
 "DecimalLatitude is less than or equal to 60",
 "DecimalLongitude is greater than or equal to 60",
 "DecimalLongitude is less than or equal to 150",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009643-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.66vj6h
title: Occurrence Download

description: A dataset containing 2741 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((11.06428 55.66857,11.08241 55.66857,11.08241 55.6799,11.06428 55.6799,11.06428 55.66857))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2741 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009645-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.42zvk2
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abies cilicica",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset includes 101 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009646-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q4pfph
title: Occurrence Download

description: A dataset containing 293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zelkova schneideriana"
 ]
}

 The dataset includes 293 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009647-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfs8sg
title: Occurrence Download

description: A dataset containing 16990 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 59.085278",
 "DecimalLatitude is less than or equal to 64.085278",
 "DecimalLongitude is greater than or equal to -145.0",
 "DecimalLongitude is less than or equal to -140.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 16990 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009644-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qsskeq
title: Occurrence Download

description: A dataset containing 154792545 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset includes 154792545 records from 12045 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009457-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17630/c3e330f5-a217-4660-ac4f-0cd57004a256
title: Resistance, reproduction, attachment: unsettling gender through cosplay (thesis data)

description: Survey data gathered from cosplayers, answering questions pertaining to identity, embodiment, gender, and violence.
Indefinite embargo applied. Embargo reason: permission not provided to allow public access
DOI: 10.15468/dl.f8h8w2
title: Occurrence Download

description: A dataset containing 269 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Medicago polymorpha",
 "Country is Bolivia (Plurinational State of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 269 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024741-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b3vukc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Enteromius bagbwensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024743-250811113504898/datasets/export for details.
DOI: 10.6084/m9.figshare.29108807
title: Research Question 3 analysis prompt

description: Finally, leveraging the ISO/IEC 25010 standard, we used prompt engineering to apply the taxonomy of the quality model in order to identify the explicit or implicit quality attributes affected by the trade-offs described in the ADR "consequences" section.
DOI: 10.7910/dvn/dcb1ih
title: Food In Center Task

description: Food In Center Task
DOI: 10.15468/dl.yapj4e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Winteria telescopa Brauer, 1901",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((7.9237 1.4388,7.9186 1.8496,6.9096 1.8496,6.7752 1.3312,7.0614 0.9078,7.5027 0.9107,7.9237 1.4388))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009916-250525065834625/datasets/export for details.
DOI: 10.15468/dl.sfnxne
title: Occurrence Download

description: A dataset containing 404520 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((118.76607 -6.23077,123.42171 -5.74464,123.58999 -1.94907,125.51582 1.36036,125.14187 2.08956,118.76607 2.08956,118.59779 -2.71566,118.76607 -6.23077))"
 ]
}

 The dataset includes 404520 records from 509 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013780-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.2vq52
title: Data from: A single-nucleotide polymorphism-based approach for rapid and cost-effective genetic wolf monitoring in Europe based on noninvasively collected samples

description: Noninvasive genetics based on microsatellite markers has become an
 indispensable tool for wildlife monitoring and conservation research over
 the past decades. However, microsatellites have several drawbacks, such as
 the lack of standardisation between laboratories and high error rates.
 Here, we propose an alternative single-nucleotide polymorphism (SNP)-based
 marker system for noninvasively collected samples, which promises to solve
 these problems. Using nanofluidic SNP genotyping technology (Fluidigm), we
 genotyped 158 wolf samples (tissue, scats, hairs, urine) for 192 SNP loci
 selected from the Affymetrix v2 Canine SNP Array. We carefully selected an
 optimised final set of 96 SNPs (and discarded the worse half), based on
 assay performance and reliability. We found rates of missing data in this
 SNP set of &lt;10% and genotyping error of ~1%, which improves
 genotyping accuracy by nearly an order of magnitude when compared to
 published data for other marker types. Our approach provides a tool for
 rapid and cost-effective genotyping of noninvasively collected wildlife
 samples. The ability to standardise genotype scoring combined with low
 error rates promises to constitute a major technological advancement and
 could establish SNPs as a standard marker for future wildlife monitoring.
description: Archive of sample and
 SNP lists and genotype filesThe archive contains all
 raw genotype files, a file with SNP IDs and their layout on a 96-well
 plate, as well a list of all samples used in the paper.suppl.zip
DOI: 10.5061/dryad.3gp32
title: Data from: Genomics of invasion: diversity and selection in introduced populations of monkeyflowers (Mimulus guttatus)

description: Global trade and travel is irreversibly changing the distribution of
 species around the world. Because introduced species experience drastic
 demographic events during colonisation, and often face novel environmental
 challenges from their native range, introduced populations may undergo
 rapid evolutionary change. Genomic studies provide the opportunity to
 investigate the extent to which demographic, historical, and selective
 processes shape the genomic structure of introduced populations by
 analysing the signature that these processes leave on genomic variation.
 Here we use next-generation sequencing to compare genome-wide
 relationships and patterns of diversity in native and introduced
 populations of the yellow monkeyflower (Mimulus guttatus). Genome
 resequencing data from ten introduced populations from the United Kingdom
 (UK) and 12 native M. guttatus populations in North America (NA),
 demonstrated reduced neutral genetic diversity in the introduced range,
 and showed that UK populations are derived from a geographic region around
 the North Pacific. A selective-sweep analysis revealed site frequency
 changes consistent with selection on 5 of 14 chromosomes, with genes in
 these regions showing reduced silent site diversity. While the target of
 selection is unknown, genes associated with flowering time and biotic and
 abiotic stresses were identified within the swept regions. The future
 identification of the specific source of origin of introduced UK
 populations will help determining if the observed selective sweeps can be
 traced to un-sampled native populations or occurred since dispersal across
 the Atlantic. Our study demonstrates the general potential of genome-wide
 analyses to uncover a range of evolutionary processes affecting invasive
 populations.
description: SNP Genotypes for native
 and introduced populations of Mimulus guttatus and
 outgroupsSNP genotypes at
 1,400,000 loci for 10 native, 20 introduced, individuals of Mimulus
 guttatus, as well as 5 outgroups of Mimulus sect.
 Simiolus.Data Set for DRYAD_23 June
 2014.zip
DOI: 10.17638/datacat.liverpool.ac.uk/3042
title: TEM images of SHINs

description: transmission electron microscopy (TEM) images of the shell isolated nanoparticles (SHINs) that were synthesised as part of the chapter comparing the shell thicknesses obtained through TEM to differential centrifugal sedimentation (DCS).
DOI: 10.5061/dryad.62ck3
title: Data from: Dietary specializations and diversity in feeding ecology of the earliest stem mammals

description: [No abstract entered]
description: Morganucodon mandible CT
 slice videoMorganucodon.mpgKuehneotherium mandible CT scan videoKuehneotherium.mpg
DOI: 10.5061/dryad.0f1m0
title: Data from: Cultural evolution of systematically structured behaviour in a non-human primate

description: Culture pervades human life and is at the origin of the success of our
 species. A wide range of other animals have culture too, but often in a
 limited form that does not complexify through the gradual accumulation of
 innovations. We developed a new paradigm to study cultural evolution in
 primates in order to better evaluate our closest relatives' cultural
 capacities. Previous studies using transmission chain experimental
 paradigms, in which the behavioural output of one individual becomes the
 target behaviour for the next individual in the chain, show that cultural
 transmission can lead to the progressive emergence of systematically
 structured behaviours in humans. Inspired by this work, we combined a
 pattern reproduction task on touch screens with an iterated learning
 procedure to develop transmission chains of baboons (Papio papio). Using
 this procedure, we show that baboons can exhibit three fundamental aspects
 of human cultural evolution: a progressive increase in performance, the
 emergence of systematic structure and the presence of lineage specificity.
 Our results shed new light on human uniqueness: we share with our closest
 relatives essential capacities to produce human-like cultural evolution.
description: Claidiere et al
 Supplementary dataData used in the
 analysis of the results presented in the article. The dataset analysed in
 the article is provided as a comma separated value file (.csv) in which
 the following columns can be found. TransChain: indicates the number of
 replications of the experiment, 1 to 6. Generation: indicates the number
 of generations, 1 to 12. TrialOrder: for each block of 50 trials, gives
 the order in which each trial was done by the baboon (number 1 was the
 first trial, 2 the second, etc). TrialName: 1 for all the random trials, 1
 to 50 for transmission trials. For transmission trials, the number is
 fixed for a lineage of grid for each replication of the experiment.
 TestingPhase: either random or transmission trials. Name: name of the
 individual. Sex: sex of the individual. AgeMonth: age in month at the time
 of the experiment. Square1 to 16: color of the square numbered by row from
 left to right and starting at the top left corner. Touch1 to 4: Number of
 the square touched by the individual for each trial in order (Touch1 was
 the first square touched, Touch2 the second one, etc). Takes values 1 to
 16. RT1 to 4: cumulative reaction times in milliseconds for the four
 responses (RT1 is the reaction time for Touch1, RT2 for Touch2,
 etc).
DOI: 10.5061/dryad.93cp6
title: Data from: Memory and fitness optimization of bacteria under fluctuating environments

description: Bacteria prudently regulate their metabolic phenotypes by sensing the
 availability of specific nutrients, expressing the required genes for
 their metabolism, and repressing them after specific metabolites are
 depleted. It is unclear, however, how genetic networks maintain and
 transmit phenotypic states between generations under rapidly fluctuating
 environments. By subjecting bacteria to fluctuating carbon sources
 (glucose and lactose) using microfluidics, we discover two types of
 non-genetic memory in Escherichia coli and analyze their benefits. First,
 phenotypic memory conferred by transmission of stable intracellular lac
 proteins dramatically reduces lag phases under cyclical fluctuations with
 intermediate timescales (1–10 generations). Second, response memory, a
 hysteretic behavior in which gene expression persists after removal of its
 external inducer, enhances adaptation when environments fluctuate over
 short timescales (&lt;1 generation). Using a mathematical model we
 analyze the benefits of memory across environmental fluctuation
 timescales. We show that memory mechanisms provide an important class of
 survival strategies in biology that improve long-term fitness under
 fluctuating environments. These results can be used to understand how
 organisms adapt to fluctuating levels of nutrients, antibiotics, and other
 environmental stresses.
description: PGENETICS-D-14-01205R1
DOI: 10.5061/dryad.6dt17
title: Data from: Phylogenomics resolves a spider backbone phylogeny and rejects a prevailing paradigm for orb web evolution

description: Spiders represent an ancient predatory lineage known for their
 extraordinary biomaterials, including venoms and silks. These adaptations
 make spiders key arthropod predators in most terrestrial ecosystems.
 Despite ecological, biomedical, and biomaterial importance, relationships
 among major spider lineages remain unresolved or poorly supported. Current
 working hypotheses for a spider “backbone” phylogeny are largely based on
 morphological evidence, as most molecular markers currently employed are
 generally inadequate for resolving deeper-level relationships. We present
 here a phylogenomic analysis of spiders including taxa representing all
 major spider lineages. Our robust phylogenetic hypothesis recovers some
 fundamental and uncontroversial spider clades, but rejects the prevailing
 paradigm of a monophyletic Orbiculariae, the most diverse lineage,
 containing orb-weaving spiders. Based on our results, the orb web either
 evolved much earlier than previously hypothesized and is ancestral for a
 majority of spiders or else it has multiple independent origins, as
 hypothesized by precladistic authors. Cribellate deinopoid orb weavers
 that use mechanically adhesive silk are more closely related to a diverse
 clade of mostly webless spiders than to the araneoid orb-weaving spiders
 that use adhesive droplet silks. The fundamental shift in our
 understanding of spider phylogeny proposed here has broad implications for
 interpreting the evolution of spiders, their remarkable biomaterials, and
 a key extended phenotype—the spider web.
description: Phylip formated data
 matrices and partition filesData matrices for d327
 and d128 analyses with partition filesBondetalData.zip
DOI: 10.5061/dryad.99dj8
title: Data from: Comparing the effectiveness of metagenomics and metabarcoding for diet analysis of a leaf-feeding monkey (Pygathrix nemaeus)

description: Fecal samples are of great value as a non-invasive means to gather
 information on the genetics, distribution, demography, diet, and parasite
 infestation of endangered species. Direct shotgun sequencing of fecal DNA
 could give information on these simultaneously, but this approach is
 largely untested. Here we use two fecal samples to characterize the diet
 of two Red-Shanked Doucs Langurs (Pygathrix nemaeus) that were fed a known
 combination of foliage, fruits, vegetables and cereals. Illumina HiSeq
 sequencing produced ~70 million paired reads per sample, of which ~10000
 (0.014%) and ~44000 (0.066%) respectively corresponded to chloroplast
 genomes. Sequences were matched against a database of available
 chloroplast ‘barcodes’ for angiosperms. The results were compared with
 ‘metabarcoding’ using PCR amplification of the P6 loop of trnL. Shotgun
 sequencing identified 7 and 9 of the likely 16 diet plants, against 6 and
 5 plant species identified by metabarcoding. Metabarcoding produced
 thousands of reads that were consistent with the known diet, but the
 barcodes were too short to identify several diet plants to genus.
 Metagenomics could utilize multiple, longer barcodes that combined had
 greater power of identification, but rare diet items were not recovered.
 Read numbers for diet species in metagenomic and metabarcoding data were
 correlated, indicating that both approaches are useful for determining
 relative sequence abundance. Metagenomic reads were uniformly distributed
 across the chloroplast genomes; thus if chloroplast genomes were to be
 used as reference, the precision of identifications and species recovery
 would improve further. Metagenomics also recovered the host mitochondrial
 genome and numerous intestinal parasite sequences in addition to
 generating data useful for characterizing the microbiome.
description: AmetPN1.fastaRaw reads for metabarcoding experiment on PN1AmetPN2.fastaRaw reads for metabarcoding experiment on PN2Identifications using metabarcodingResults for metabarcoding based identifications for PN1 and PN2metabarcoding_identifications_95.xlsxIdentifications using metagenomics (paired end)Results for metagenomics based identifications for PN1 and PN2PE_identifications_98.xlsx
DOI: 10.5061/dryad.6t794
title: Data from: Population size, habitat fragmentation, and the nature of adaptive variation in a stream fish

description: Whether and how habitat fragmentation and population size jointly affect
 adaptive genetic variation and adaptive population differentiation are
 largely unexplored. Owing to pronounced genetic drift, small, fragmented
 populations are thought to exhibit reduced adaptive genetic variation
 relative to large populations. Yet fragmentation is known to increase
 variability within and among habitats as population size decreases. Such
 variability might instead favour the maintenance of adaptive polymorphisms
 and/or generate more variability in adaptive differentiation at smaller
 population size. We investigated these alternative hypotheses by analysing
 coding-gene, single-nucleotide polymorphisms associated with different
 biological functions in fragmented brook trout populations of variable
 sizes. Putative adaptive differentiation was greater between small and
 large populations or among small populations than among large populations.
 These trends were stronger for genetic population size measures than
 demographic ones and were present despite pronounced drift in small
 populations. Our results suggest that fragmentation affects natural
 selection and that the changes elicited in the adaptive genetic
 composition and differentiation of fragmented populations vary with
 population size. By generating more variable evolutionary responses, the
 alteration of selective pressures during habitat fragmentation may affect
 future population persistence independently of, and perhaps long before,
 the effects of demographic and genetic stochasticity are manifest.
description: Cape Race_final SNP
 dataSNP data for 446
 individuals from 14 brook trout populations originating from Cape Race,
 Newfoundland, Canada