cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.20350/digitalcsic/18072
title: Raw data and analysis of the results corresponding to the manuscript Comparative characterization of copper tolerance in the Saccharomyces genus [DATASET]

description: Figure1_rawdata1: This folder contains the raw data distributed as 8 .xlsx files from growth experiments performed with Saccharomyces strains cultured in SC medium supplemented with increasing copper concentrations. It includes time course OD600 measurements, growth parameters generated with GCAT, fractional areas and calculated NIC, MIC, and R² values, as well as the script used to compute NIC and MIC (.Rmd extension). -- Figure2_rawdata2: This .xlsx file contains the raw data used to calculate CUP1 copy number for the Saccharomyces strains analyzed in this study. Ct values obtained through qPCR using genomic DNA and measured on a LightCycler® 480 Instrument II (Roche) were processed and transformed to generate the data presented in Figure 2.-- Figure3_rawdata3: This .zip file contains an .xlsx file showing data transformation for elaboration of figure 3 and raw data (.pdf file) directly obtained from the flow cytometer Muse Cell Analyzer (Millipore, United States).-- Figure4,5,6_rawdata4: This .xlsx file contains the raw data used to obtain mRNA levels of ACT, CUP1, CRS5, SOD1 and TRX2 genes used to create scatterplots, PCAs and Heatmaps of figures 4, 5 and 6.
description: Copper is an essential redox-active metal that serves as a cofactor in fundamental biological processes, including mitochondrial respiration and iron homeostasis. However, excess copper promotes the formation of reactive oxygen species, leading to cellular damage and death. Owing to its antimicrobial properties, copper is widely used in winemaking. Saccharomyces cerevisiae, the primary fermentative yeast, responds to copper excess by transcriptionally inducing the expression of metallothioneins CUP1 and CRS5, along with antioxidant defenses. In this study, we examined copper tolerance across the Saccharomyces genus. Consistent with previous work, CUP1 copy number variation (CNV) and expression was the main determinant of copper tolerance in wine S. cerevisiae strains. In contrast, wild Saccharomyces species, harboring only a single CUP1 copy, showed no correlation between copper tolerance and CUP1 expression levels. Notably, species within the Saccharomyces clade closely related to S. cerevisiae predominantly expressed CUP1, whereas more distantly related species preferentially expressed CRS5. These findings highlight a substantial role for Crs5 metallothionein in copper detoxification when CUP1 amplification is absent and suggest that additional Cup1-independent mechanisms contribute to copper tolerance in non-domesticated Saccharomyces species.
DOI: 10.1594/pangaea.973501
title: Characteristics of the thaliacean Salpa thompsoni population in the Atlantic sector of the Southern Ocean in early spring

description: The pelagic tunicate Salpa thompsoni accounts for a large portion of the zooplankton in the Southern Ocean. This dataset contains information on S. thompsoni distribution, abundance, biomass, and biological characteristics (oral-atrial length, salp form, and stage of development) collected during Austral spring of 2022 in the Atlantic Sector of the Southern Ocean. In total, individual data are provided for 521 S. thompsoni specimens collected at 14 stations using tows of the Rectangular Midwater Trawl (RMT-8, mouth area 8 m², 4.5 mm mesh size) and the Isaacs-Kidd Midwater Trawl (IKMT, mouth area 2.5 m², 0.5 mm mesh size) in the top 600 and 200 m water layer, respectively.
DOI: 10.1594/pangaea.984116
title: Vorarlberg (Austria) Glacier outlines, 2017-2020-2022-2023

description: This dataset compiles glacier outlines for the Austrian state of Vorarlberg for 2017, 2020, 2022, and 2023. Outlines were mapped using high resolution, multi-temporal orthophotos and elevation change data derived from digital elevation models available for 2017 and 2023. The aerial imagery and topographic data were provided by the regional government of Vorarlberg via their geodata portal https://vogis.vorarlberg.at/. New outlines of glacial features were mapped manually using the outlines from the third Austrian glacier inventory (GI 3) as a starting point (for glaciers in the Silvretta range, outlines from a regional inventory from 2017 were used as a starting point). In cases of fragmentation, the ID number of the original glacier was maintained. The 2020 and 2022 boundaries were mapped from orthophotos. In 2017 and 2023, orthophotos as well as elevation change information and hillshades derived from the 2017 and 2023 DEMs were used. For the 2023 outlines, individual glacier fragments (multi-polygons associated with the same glacier id number) were assessed and categorized for criteria such as presence of debris cover and crevasses. Refer to metadata_VBG_inventory.txt for information on data attributes.
DOI: 10.1594/pangaea.705527
title: (Table 4) Isotopic composition of strontium in planktonic foraminiferas from sediments of the DSDP Hole 94-607

description: d87Sr = [(87Sr/86Sr)_sample / (87Sr/86Sr)_seawater - 1] x 10**5(87Sr/86Sr)_seawater = 0.709172
DOI: 10.1594/pangaea.819117
title: Micromesistius poutassou (blue whiting) abundance and biomass data in Bay of Biscay estimated from acoustic surveys (2000-2012)

description: Acoustic and pelagic trawl data were collected during various pelagic surveys carried out by IFREMER in May between 2000 and 2012 (except 2001), on the eastern continental shelf of the Bay of Biscay (Pelgas series). The acoustic data were collected with a Simrad EK60 echosounder operating at 38 kHz (beam angle at -3 dB: 7°, pulse length set to 1.024 ms). The echosounder transducer was mounted on the vessel keel, at 6 m below the sea surface. The sampling design were parallel transects spaced 12 nm apart which were orientated perpendicular to the coast line from 20 m to about 200 m bottom depth. The nominal sailing speed was 10 knots and 3 knots on average during fishing operations. The scrutinising (species identification) of acoustic data was done by first characterising acoustic schools by type and then linking these types with the species composition of specific trawl hauls. The data set contains nautical area backscattering values, biomass and abundance estimates for blue whiting for one nautical mile long transect lines. Further information on the survey design, scrutinising and biomass estimation can be found in Doray et al. 2012.
description: Supplement to: Huse, Geir; MacKenzie, Brian R; Trenkel, Verena M; Doray, Mathieu; Nøttestad, Leif; Óskarsson, Guomundur J (2015): Spatially explicit estimates of stock sizes, structure and biomass of herring and blue whiting, and catch data of bluefin tuna. Earth System Science Data, 7(1), 35-46
DOI: 10.1594/pangaea.848121
title: Table 1. Radiocarbon dates from TPC522 and box core surface samples from BC521 and BC523

description: Recent intensification of wind-driven upwelling of warm upper circumpolar deep water (UCDW) has been linked to accelerated melting of West Antarctic ice shelves and glaciers. To better assess the long term relationship between UCDWupwelling and the stability of theWest Antarctic Ice Sheet, we present a multi-proxy reconstruction of surface and bottom water conditions in Marguerite Bay, West Antarctic Peninsula (WAP), through the Holocene. A combination of sedimentological, diatom and foraminiferal records are, for the first time, presented together to infer a decline in UCDW influence within Marguerite Bay through the early to mid Holocene and the dominance of cyclic forcing in the late Holocene. Extensive glacial melt, limited sea ice and enhanced primary productivity between 9.7 and 7.0 ka BP is considered to be most consistent with persistent incursions of UCDW through Marguerite Trough. From 7.0 ka BP sea ice seasons increased and productivity decreased, suggesting that UCDW influence within Marguerite Bay waned, coincident with the equatorward migration of the Southern Hemisphere Westerly Winds (SWW). UCDW influence continued through the mid Holocene, and by 4.2 ka BP lengthy sea ice seasons persisted within Marguerite Bay. Intermittent melting and reforming of this sea ice within the late Holocene may be indicative of episodic incursions of UCDW into Marguerite Bay during this period. The cyclical changes in the oceanography within Marguerite Bay during the late Holocene is consistent with enhanced sensitively to ENSO forcing as opposed to the SWW-forcing that appears to have dominated the early to mid Holocene. Current measurements of the oceanography of the WAP continental shelf suggest that the system has now returned to the early Holocene-like oceanographic configuration reported here, which in both cases has been associated with rapid deglaciation.
description: Supplement to: Peck, Victoria L; Allen, Claire Susannah; Kender, Sev; McClymont, Erin L; Hodgson, Dominic A (2015): Oceanographic variability on the West Antarctic Peninsula during the Holocene and the influence of upper circumpolar deep water. Quaternary Science Reviews, 119, 54-65
DOI: 10.1594/pangaea.900888
title: Environmental data from the coast of Ghana
DOI: 10.1594/pangaea.910717
title: Wells spatial coordinates

description: Identifying the wells' spatial distribution pattern helps to determine the magnitude of the pressures on the ground, analyze their distribution trends and dispersion patterns using GIS, and support decision-makers with plans to mitigate this problem.
DOI: 10.1594/pangaea.912140
title: Global temperature calibration of the Long chain Diol Index in marine surface sediments

description: #0 = coel.; *0 = not available.Note 1: If there was no salinity data (WOA13) available for a certain core-top location, and there was also no LDI or C32 1,15-diol fractional abundance value for this core-top, then we have not adopted data from nearby grids.Note 2: If there was no SST data (WOA13) available for a certain core-top location, and there was also no LDI value for this core-top, then we have not adopted data from nearby grids.Note 3: If there was no seasonal SST or nutrient data available for a certain core-top location from WOA13, and this core-top was not included in the final LDI calibration, then we have not adopted data from nearby grids.Note 4: The fractional abundances of a few core-tops from the Iberian margin do not sum up to exactly 1, this is because in the original paper (de Bar et al., 2016) the core-tops were analyzed two to three times, and the fractional abundances were averaged.Note 4: The fractional abundances of a few core-tops from the "Rampen et al., 2012" reference do not sum up to exactly 1, because the original data was not available, and thus the reported data from Rampen et al. (2012) was used which are rounded to two decimal places.Note 5: Long chain diols marked as "n.a." or "coel." (=co-elutes) were treated as zero for calculating the final fractional abundances. In case one of the LDI or Diol Index diols was marked as "n.a." or "coel.", the LDI or Diol Index was not calculated.Note 6: For certain samples fractional abundances are given but not the LDI (mainly in Arctic and Antarctic), as the relative LDI diol abundances were considered too low for index calculation.Note that the number of decimals shown here is different from the original dataset, i.e. the dataset in the supplements of the article.
DOI: 10.1594/pangaea.912255
title: Arctic sea level data from tidal gauge and model simulations from 1948-2009

description: A suite of model simulations is used to investigate the spatiotemporal variability of the Arctic Ocean circulation and the observing systems required to capture it. A comparison with sea level observations shows that all model runs realistically simulate inter-annual sea level varia-bility, but the simulated seasonal sea level variability and underlying changes in the model salinity need to be further improved. At periods &lt;30 days, sea level variability is equivalent barotropic and strongly captured by bottom pressure observations. At the seasonal period, both barotropic and baroclinic processes contribute involving variations in the mass and densi-ty fields. Over the entire Arctic Ocean, steric height variability is dominated by halosteric effects in the upper layer. The salinity changes are related to sea ice processes, river runoff, and redistribution of the freshwater. At decadal timescales, sea level variations in the Canadi-an Basin relate to halosteric effects in the upper and intermediate layers. An adjoint sensitivi-ty analysis reveals that the decadal salinity variability is caused by anticyclonic/cyclonic wind stress, which accumulate/release freshwater in the upper layer and enhance/reduce geostrophic currents in the intermediate layer. The adjoint model simulations identify the importance of moorings and satellite altimetry on monitoring the Arctic salinity and circulation changes: while moorings capture more local salinity changes, the satellite altimetry may capture the influence of freshwater originating from the Bering Strait and the Eurasian Basin. Our study suggests that to capture basin-wide salinity changes, we need to deploy moorings in different positions spreading across the Arctic Ocean.
DOI: 10.1594/pangaea.913492
title: Strainmeter measurement at Stromboli Sacks-Evertson borehole, 2019-03-15
DOI: 10.1594/pangaea.913493
title: Strainmeter measurement at Stromboli Sacks-Evertson borehole, 2019-07-03
DOI: 10.1594/pangaea.913494
title: Strainmeter measurement at Stromboli Sacks-Evertson borehole, 2019-08-28
DOI: 10.1594/pangaea.913580
title: Biogeochemistry of suspended particulate matter of surface waters from the nearshore zone of Herschel Island, Canada
DOI: 10.1594/pangaea.913718
title: Biogeochemistry of suspended particulate matter of thaw stream waters from the nearshore zone of Herschel Island, Canada
DOI: 10.1594/pangaea.913720
title: Biogeochemistry of surface sedimens from the nearshore zone of Herschel Island, Canada
DOI: 10.1594/pangaea.914533
title: Annotated Southern Ocean diatom LM micrographs from POLARSTERN cruise PS79, 10 p - masked

description: Samples were taken during expeditions ANT-XXVII/2 (PS79) by 20 µm mesh size plankton nets from ca. 15 to 0 m depth. To obtain clean siliceous diatom frustules, the samples were oxidized using hydrochloric acid and potassium permanganate and mounted on coverslips on standard microscopic slides in Naphrax resin. Classes ID:Asteromphalus.labId_6835 0Chaetoceros.labId_6813 1Fragilariopsis kerguelensis.labId_8356 2Fragilariopsis rhombica.labId_8362 3Nitzschia.labId_6758 4Pseudonitzschia.labId_8364 5Rhizosolenia.labId_6776 6Silicoflagellate.labId_10255 7Thalassiosira gracilis.labId_10366 8Thalassiosira lentiginosa.labId_10369 9
DOI: 10.1594/pangaea.914534
title: Annotated Southern Ocean diatom LM micrographs from POLARSTERN cruise PS79, 10 p - unmasked

description: Samples were taken during expeditions ANT-XXVII/2 (PS79) by 20 µm mesh size plankton nets from ca. 15 to 0 m depth. To obtain clean siliceous diatom frustules, the samples were oxidized using hydrochloric acid and potassium permanganate and mounted on coverslips on standard microscopic slides in Naphrax resin. Classes ID:Asteromphalus.labId_6835 0Chaetoceros.labId_6813 1Fragilariopsis kerguelensis.labId_8356 2Fragilariopsis rhombica.labId_8362 3Nitzschia.labId_6758 4Pseudonitzschia.labId_8364 5Rhizosolenia.labId_6776 6Silicoflagellate.labId_10255 7Thalassiosira gracilis.labId_10366 8Thalassiosira lentiginosa.labId_10369 9
DOI: 10.1594/pangaea.914536
title: Annotated Southern Ocean diatom LM micrographs from POLARSTERN cruise PS79, 100 p - masked

description: Samples were taken during expeditions ANT-XXVII/2 (PS79) by 20 µm mesh size plankton nets from ca. 15 to 0 m depth. To obtain clean siliceous diatom frustules, the samples were oxidized using hydrochloric acid and potassium permanganate and mounted on coverslips on standard microscopic slides in Naphrax resin. Classes ID:Asteromphalus.labId_6835 0Chaetoceros.labId_6813 1Fragilariopsis kerguelensis.labId_8356 2Fragilariopsis rhombica.labId_8362 3Nitzschia.labId_6758 4Pseudonitzschia.labId_8364 5Rhizosolenia.labId_6776 6Silicoflagellate.labId_10255 7Thalassiosira gracilis.labId_10366 8Thalassiosira lentiginosa.labId_10369 9
DOI: 10.1594/pangaea.914538
title: Annotated Southern Ocean diatom LM micrographs from POLARSTERN cruise PS79, 100 p - unmasked

description: Samples were taken during expeditions ANT-XXVII/2 (PS79) by 20 µm mesh size plankton nets from ca. 15 to 0 m depth. To obtain clean siliceous diatom frustules, the samples were oxidized using hydrochloric acid and potassium permanganate and mounted on coverslips on standard microscopic slides in Naphrax resin. Classes ID:Asteromphalus.labId_6835 0Chaetoceros.labId_6813 1Fragilariopsis kerguelensis.labId_8356 2Fragilariopsis rhombica.labId_8362 3Nitzschia.labId_6758 4Pseudonitzschia.labId_8364 5Rhizosolenia.labId_6776 6Silicoflagellate.labId_10255 7Thalassiosira gracilis.labId_10366 8Thalassiosira lentiginosa.labId_10369 9
DOI: 10.6084/m9.figshare.31329616
title: <b>China's carbon peaking policy intensity dataset across national, provincial, municipal to county-level over 2021 to 2025</b>

description: This dataset comprises 316 national, provincial, municipal, and county-level carbon peaking policies intensity (2021–2025). It supports research on China’s carbon peaking policy system and enables comparative and evaluative policy studies.
DOI: 10.1594/pangaea.914539
title: Annotated Southern Ocean diatom LM micrographs from POLARSTERN cruise PS103, 10 p - masked

description: Samples were taken during expeditions PS103 by 20 µm mesh size plankton nets from ca. 15 to 0 m depth. To obtain clean siliceous diatom frustules, the samples were oxidized using hydrochloric acid and potassium permanganate and mounted on coverslips on standard microscopic slides in Naphrax resin. Classes ID:Asteromphalus.labId_6835 0Chaetoceros.labId_6813 1Fragilariopsis kerguelensis.labId_8356 2Fragilariopsis rhombica.labId_8362 3Nitzschia.labId_6758 4Pseudonitzschia.labId_8364 5Rhizosolenia.labId_6776 6Silicoflagellate.labId_10255 7Thalassiosira gracilis.labId_10366 8Thalassiosira lentiginosa.labId_10369 9
DOI: 10.6084/m9.figshare.31329616.v3
title: <b>China's carbon peaking policy intensity dataset across national, provincial, municipal to county-level over 2021 to 2025</b>

description: This dataset comprises 316 national, provincial, municipal, and county-level carbon peaking policies intensity (2021–2025). It supports research on China’s carbon peaking policy system and enables comparative and evaluative policy studies.
DOI: 10.1594/pangaea.914540
title: Annotated Southern Ocean diatom LM micrographs from POLARSTERN cruise PS103, 10 p - unmasked

description: Samples were taken during expeditions PS103 by 20 µm mesh size plankton nets from ca. 15 to 0 m depth. To obtain clean siliceous diatom frustules, the samples were oxidized using hydrochloric acid and potassium permanganate and mounted on coverslips on standard microscopic slides in Naphrax resin.Classes ID:Asteromphalus.labId_6835 0Chaetoceros.labId_6813 1Fragilariopsis kerguelensis.labId_8356 2Fragilariopsis rhombica.labId_8362 3Nitzschia.labId_6758 4Pseudonitzschia.labId_8364 5Rhizosolenia.labId_6776 6Silicoflagellate.labId_10255 7Thalassiosira gracilis.labId_10366 8Thalassiosira lentiginosa.labId_10369 9
DOI: 10.6084/m9.figshare.31329616.v2
title: <b>A dataset on the policy intensity of China's carbon peaking implementation plans from the national level to counties（2021-2025）</b>

description: This dataset comprises 316 national, provincial, municipal, and county-level carbon peaking policies intensity (2021–2025). It supports research on China’s carbon peaking policy system and enables comparative and evaluative policy studies.
DOI: 10.1594/pangaea.914542
title: Annotated Southern Ocean diatom LM micrographs from POLARSTERN cruise PS103, 100 p - masked

description: Samples were taken during expeditions PS103 by 20 µm mesh size plankton nets from ca. 15 to 0 m depth. To obtain clean siliceous diatom frustules, the samples were oxidized using hydrochloric acid and potassium permanganate and mounted on coverslips on standard microscopic slides in Naphrax resin. Classes ID:Asteromphalus.labId_6835 0Chaetoceros.labId_6813 1Fragilariopsis kerguelensis.labId_8356 2Fragilariopsis rhombica.labId_8362 3Nitzschia.labId_6758 4Pseudonitzschia.labId_8364 5Rhizosolenia.labId_6776 6Silicoflagellate.labId_10255 7Thalassiosira gracilis.labId_10366 8Thalassiosira lentiginosa.labId_10369 9
DOI: 10.1594/pangaea.914543
title: Annotated Southern Ocean diatom LM micrographs from POLARSTERN cruise PS103, 100 p - unmasked

description: Samples were taken during expeditions PS103 by 20 µm mesh size plankton nets from ca. 15 to 0 m depth. To obtain clean siliceous diatom frustules, the samples were oxidized using hydrochloric acid and potassium permanganate and mounted on coverslips on standard microscopic slides in Naphrax resin. Classes ID:Asteromphalus.labId_6835 0Chaetoceros.labId_6813 1Fragilariopsis kerguelensis.labId_8356 2Fragilariopsis rhombica.labId_8362 3Nitzschia.labId_6758 4Pseudonitzschia.labId_8364 5Rhizosolenia.labId_6776 6Silicoflagellate.labId_10255 7Thalassiosira gracilis.labId_10366 8Thalassiosira lentiginosa.labId_10369 9
DOI: 10.15468/dl.7jytcf
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agonimia gelatinosa",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013762-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.915202
title: Monthly Land Surface Temperature estimated from in-situ measures during 2003-2014 over the 32 sites globally

description: DTC_mean_max_monthly_LST_from_fluxtowers: contains the monthly LST estimated from in-situ measures during 2003-2014 over the 32 sites globally. Columns include site_id, year, month, obs_mean, obs_max,DTC_mean, DTC_max, site_nam, IGBP, lon, and lat.
DOI: 10.15468/dl.ze2g62
title: Occurrence Download

description: A dataset containing 1080 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Eragrostis falcata"
 ]
}

 The dataset includes 1080 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013759-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.915219
title: DTC-Modeled monthly LST from geostationary observations at 5 km from 2010-2018 over the 32 sites globally

description: DTC_mean_max_monthly_LST_from_GEO.csv: contains the DTC-Modeled monthly LST from geostationary observations at 5 km from 2010-2018 over the 32 sites globally. The data have obs_max (monthly maximum LST based on hourly observations only), obs_mean (monthly mean LST based on hourly observations only), obs_num (number of the observations in a diurnal cycle), DTC_mean, DTC_max, year, month, site_name, IGBP, lon, and lat.