cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21971669
title: Supplementary Material for: Role of NADPH Oxidases in Renal Aging

description: Introduction: Aging of the kidney is associated with complex molecular, histological, and functional changes. Although the aging process itself does not induce renal damage, underlying disease such as diabetes mellitus can aggravate kidney injury during aging. Although oxidative stress is considered an important mediator in age-related renal fibrosis, it is unclear how oxidative stress increases during normal and diabetic aging. Methods: In this study, we investigated molecular changes in the kidney in normal and diabetic aging mice. C57BL6 mice were studied at 2, 12, and 24 months of age, and leptin receptor-deficient db/db mice were studied at 8, 12, 16, 20, 24 and 38 weeks of age. We measured renal functional parameters, fibrotic and inflammatory markers, and oxidative stress markers at all the above time points. Results: Both non-diabetic and diabetic mice exhibited progressive microalbuminuria during their lifespan. Interestingly, both diabetic aging and normal aging mice showed progressive increases in oxidative stress markers such as plasma and urinary 8-isoprostane as well as renal lipid hydroperoxide content. In renal tissues, proinflammatory and profibrotic molecules were significantly upregulated in an age-dependent manner. Expression of three NADPH oxidase (Nox) isoforms, namely Nox1, Nox2, and Nox4, was significantly increased during aging. Compared with normal aging mice, diabetic db/db mice demonstrated more dramatic changes during aging process. Conclusions: Our findings suggest that NADPH oxidases play an important role in the aging kidney under both normal and diabetic conditions. Targeting of these oxidases might be a new promising therapy to treat issues associated with aging kidneys.
DOI: 10.5286/isis.e.rb1710136
title: Time of flight-resolved gamma background measurements on VESUVIO

description: Gamma background is one of the main factors limiting the current VESUVIO capabilities. We aim at a characterisation of  the time of flight dependence of the gamma background.  This will be complemented by investigation of  possible optimisation routes for the enhancement of the signal/background ratio and suppression of the sample-dependent gamma background. The proposed measurements will make use of a high resolution Ge detector with biparametric time of flight (in the range 20 us
DOI: 10.6084/m9.figshare.21982205
title: Supplementary Material for: Body composition predictors of complicated Crohn’s disease

description: Background: High visceral adipose tissue (VAT) and creeping fat (CrF) in Crohn's disease (CD) have been widely recognized. The VAT to subcutaneous adipose tissue (SAT) ratio and sarcopenia have been associated with CD complications. Studies regarding the influence of body composition predictors on CD complications assessed with magnetic resonance enterography (MRE) are scarce. Aim: Assessment of the body composition parameters and CrF in opportunistic MRE as predictors of complicated CD. Methods: This was a retrospective study of 114 patients with inflammatory (n = 54) and complicated (n = 60) CD. The semi-automated assessment of body composition and the qualitative evaluation of CrF were performed. Results: Body composition parameters did not differ between both groups regarding the body mass index (BMI) (p =0.50), total adipose tissue index (TATI) (p =0.14), subcutaneous adipose tissue index (SATI) (p =0.17), visceral adipose tissue index (VATI) (p =0.33), VAT/SAT ratio (p =0.77), intramuscular adipose tissue (IMAT) (p =0.64), skeletal muscle index (SMI) (p =0.22), and sarcopenia (p =0.50). 47 strictures, 18 fistulae, and seven abscesses were identified. Fistulae were more likely to occur in patients with CrF (odds ratio [OR] 5.07, 95% confidence interval [CI] 1.76–14.56; p=&lt;0.001) and high VAT/SAT ratio (OR: 3.82, 95% CI 1.34–10.85; p=0.01). Conclusion: Body composition measurements in CD patients displayed no statistically significant difference between the groups of inflammatory and complicated disease. Nonetheless, CD patients stratified in the group of high VAT/SAT ratio and the presence of CrF should be recognized as risk groups for the occurrence of fistulae.
DOI: 10.6084/m9.figshare.22249990.v1
title: Complement C4 in COVID 19 patients in Khartoum case-control study

description: <br> This study was aimed to determine the serum Complement C4 level among COVID-19 patients in Khartoum and comparing them with healthy control.
DOI: 10.5281/zenodo.6797570
title: Dashboard "Communication technologies used and parameters measured in Food Supply Chains in the scientific literature"

description: This dashboard collects information about the communication technologies used and parameters measured in several scientific papers. Data can be filtered according to different criteria: Year of publication of the paper. Main topic in which the objetive of the paper is framed within. Stage of the food supply chain where the study is developed. Product group. This dashboard was created by Manuel Amador Cervera for the University of Deusto in the context of the Horizon 2020 project "FOODRUS". The information contained in it refers to the scientific publications outlined in the table that can be found in the "References" sheet.<br> This project has received funding from the European Union’s Horizon 2020 Research & Innovation programme under Grant Agreement no. 101000617. This dashboard is the sole responsibility of the University of Deusto, and the European Union or any user is not liable for any use that may be made of the information contained therein.
DOI: 10.5281/zenodo.6797569
title: Dashboard "Communication technologies used and parameters measured in Food Supply Chains in the scientific literature"

description: This dashboard collects information about the communication technologies used and parameters measured in several scientific papers. Data can be filtered according to different criteria: Year of publication of the paper. Main topic in which the objetive of the paper is framed within. Stage of the food supply chain where the study is developed. Product group according to the Classification of Products by Activity (CPA) of the European Union. This dashboard was created by Manuel Amador Cervera for the University of Deusto in the context of the Horizon 2020 project "FOODRUS". The information contained in it refers to the scientific publications outlined in the table that can be found in the "References" sheet.<br> This project has received funding from the European Union’s Horizon 2020 Research & Innovation programme under Grant Agreement no. 101000617. This dashboard is the sole responsibility of the University of Deusto, and the European Union or any user is not liable for any use that may be made of the information contained therein.
DOI: 10.5281/zenodo.7431736
title: Dashboard "Communication technologies used and parameters measured in Food Supply Chains in the scientific literature"

description: This dashboard collects information about the communication technologies used and parameters measured in several scientific papers. Data can be filtered according to different criteria: Year of publication of the paper. Main topic in which the objetive of the paper is framed within. Stage of the food supply chain where the study is developed. Product group according to the Classification of Products by Activity (CPA) of the European Union. This dashboard was created by Manuel Amador Cervera for the University of Deusto in the context of the Horizon 2020 project "FOODRUS". The information contained in it refers to the scientific publications outlined in the table that can be found in the "References" sheet.<br> This project has received funding from the European Union’s Horizon 2020 Research & Innovation programme under Grant Agreement no. 101000617. This dashboard is the sole responsibility of the University of Deusto, and the European Union or any user is not liable for any use that may be made of the information contained therein.
DOI: 10.5281/zenodo.8119271
title: Dashboard "Communication technologies used and parameters measured in Food Supply Chains in the scientific literature"

description: This dashboard collects information about the communication technologies used and parameters measured in several scientific papers. Data can be filtered according to different criteria: Year of publication of the paper. Main topic in which the objetive of the paper is framed within. Stage of the food supply chain where the study is developed. Product group according to the Classification of Products by Activity (CPA) of the European Union. This dashboard was created by Manuel Amador Cervera for the University of Deusto in the context of the Horizon 2020 project "FOODRUS". The information contained in it refers to the scientific publications outlined in the table that can be found in the "References" sheet.<br> This project has received funding from the European Union’s Horizon 2020 Research & Innovation programme under Grant Agreement no. 101000617. This dashboard is the sole responsibility of the University of Deusto, and the European Union or any user is not liable for any use that may be made of the information contained therein.
DOI: 10.6084/m9.figshare.23634006
title: A dataset called GEOICS

description: - A dataset called GEOICS (georeferenced individual cocaine seizures) with 44 variables and 939 records with geospatial attributes and quantitative and qualitative data related to individual cocaine seizures (ICS) in Brazil - 2022. - Dataset with geographic coordinates of clandestine airstrips in the Amazon region. - Python code.
DOI: 10.6084/m9.figshare.23302271.v2
title: Raw data

description: Raw data of Figure S2B
DOI: 10.48323/7hjr6-yew21
title: XML-Corpus Diss A. Schönherr

description: Corpus of Website articles that were analysed in https://digital.obvsg.at/ulbtirolhs/content/titleinfo/6572630
DOI: 10.6084/m9.figshare.23302271
title: Raw data

description: Raw data of Figure S2B
DOI: 10.6084/m9.figshare.23302271.v4
title: Raw data

description: Raw data of Figure S2B
DOI: 10.6084/m9.figshare.23302271.v3
title: Raw data

description: Raw data of Figure S2B
DOI: 10.6084/m9.figshare.23634330
title: Supplementary Material for: Preoperative prediction of microvascular invasion with gadoxetic acid-enhanced magnetic resonance imaging in patients with single hepatocellular carcinoma: The implication of surgical decision on the extent of liver resection

description: Introduction: Microvascular invasion (MVI) is one of the most important prognostic factors for hepatocellular carcinoma (HCC) recurrence, but its application in preoperative clinical decisions is limited. This study aimed to identify preoperative predictive factors for MVI in HCC and further evaluate oncologic outcomes of different types and extents of hepatectomy according to stratified risk of MVI. Methods: Patients with surgically resected single HCC (≤5 cm) who underwent preoperative gadoxetic acid-enhanced magnetic resonance imaging (MRI) were included in a single-center retrospective study. Two radiologists reviewed the images with no clinical, pathological, or prognostic information. Significant predictive factors for MVI were identified using logistic regression analysis against pathologic MVI and used to stratify patients. In the subgroup analysis, long-term outcomes of the stratified patients were analyzed using the Kaplan-Meier method with log-rank test and compared between anatomical and non-anatomical or major and minor resection. Results: A total of 408 patients, 318 men and 90 women, with a mean age of 56.7 years were included. Elevated levels of tumor markers (α-FP ≥25 ng/mL and PIVKA-II ≥40 mAU/mL) and three MRI features (tumor size ≥ 3 cm, non-smooth tumor margin, and arterial peritumoral enhancement) were independent predictive factors for MVI. As the MVI risk increased from low (no predictive factor) and intermediate (1–2 factors) to high-risk (3–4 factors), recurrence-free and overall survival of each group significantly decreased (P= 0.001). In the high MVI risk group, 5-year cumulative recurrence rate was significantly lower in patients who underwent major compared to minor hepatectomy (26.6 vs 59.8%, P= 0.027). Conclusion: Tumor markers and MRI features can predict the risk of MVI and prognosis after hepatectomy. Patients with high MVI risk had the worst prognosis among the three groups, and major hepatectomy improved long-term outcomes in these high-risk patients.
DOI: 10.5281/zenodo.7382814
title: 16S rRNA sequencing gene datasets for CRC data

description: Used datasets: Dataset 16S rRNA Region Control (n) Adenoma (n) CRC (n) Available metadata Baxter V4 171 198 120 Gender, age, weight, height, BMI, country, race Zackular V4 30 30 30 Gender, age, weight, height, BMI, country, race, FOBT, medication Zeller V4 50 38 41 Gender, age, BMI, country, FOBT <strong>TOTAL</strong> V4 251 266 191 <em>All of the above</em> Data processing & sharing All datasets were processed using qiime2 pipeline with DADA2 for Sequence quality control and feature table construction and SILVA database for taxonomic assignment, and then a <em>phyloseq </em>object was constructed. Abundance table at genus level is in file <em>genus.csv</em> (Sample counts with NO filtering). Clean metadata is in <em>metadata.csv</em> file (Countries: CA - Canada. USA - United States of America. FRA - France.) Phyloseq object is in file <em>physeq.RDS</em> (Saved as an RDS object in R) More information is here.
DOI: 10.5281/zenodo.7382813
title: 16S rRNA sequencing gene datasets for CRC data

description: Used datasets: Dataset 16S rRNA Region Control (n) Adenoma (n) CRC (n) Available metadata Baxter V4 171 198 120 Gender, age, weight, height, BMI, country, race Zackular V4 30 30 30 Gender, age, weight, height, BMI, country, race, FOBT, medication Zeller V4 50 38 41 Gender, age, BMI, country, FOBT <strong>TOTAL</strong> V4 251 266 191 <em>All of the above</em> Data processing & sharing All datasets were processed using qiime2 pipeline with DADA2 for Sequence quality control and feature table construction and SILVA database for taxonomic assignment, and then a <em>phyloseq </em>object was constructed. Abundance table at genus level is in file <em>genus.csv</em> (Sample counts with NO filtering). Clean metadata is in <em>metadata.csv</em> file (Countries: CA - Canada. USA - United States of America. FRA - France.) Phyloseq object is in file <em>physeq.RDS</em> (Saved as an RDS object in R) More information is here.
DOI: 10.6084/m9.figshare.23634339
title: Supplementary Material for: Preoperative prediction of microvascular invasion with gadoxetic acid-enhanced magnetic resonance imaging in patients with single hepatocellular carcinoma: The implication of surgical decision on the extent of liver resection

description: Introduction: Microvascular invasion (MVI) is one of the most important prognostic factors for hepatocellular carcinoma (HCC) recurrence, but its application in preoperative clinical decisions is limited. This study aimed to identify preoperative predictive factors for MVI in HCC and further evaluate oncologic outcomes of different types and extents of hepatectomy according to stratified risk of MVI. Methods: Patients with surgically resected single HCC (≤5 cm) who underwent preoperative gadoxetic acid-enhanced magnetic resonance imaging (MRI) were included in a single-center retrospective study. Two radiologists reviewed the images with no clinical, pathological, or prognostic information. Significant predictive factors for MVI were identified using logistic regression analysis against pathologic MVI and used to stratify patients. In the subgroup analysis, long-term outcomes of the stratified patients were analyzed using the Kaplan-Meier method with log-rank test and compared between anatomical and non-anatomical or major and minor resection. Results: A total of 408 patients, 318 men and 90 women, with a mean age of 56.7 years were included. Elevated levels of tumor markers (α-FP ≥25 ng/mL and PIVKA-II ≥40 mAU/mL) and three MRI features (tumor size ≥ 3 cm, non-smooth tumor margin, and arterial peritumoral enhancement) were independent predictive factors for MVI. As the MVI risk increased from low (no predictive factor) and intermediate (1–2 factors) to high-risk (3–4 factors), recurrence-free and overall survival of each group significantly decreased (P= 0.001). In the high MVI risk group, 5-year cumulative recurrence rate was significantly lower in patients who underwent major compared to minor hepatectomy (26.6 vs 59.8%, P= 0.027). Conclusion: Tumor markers and MRI features can predict the risk of MVI and prognosis after hepatectomy. Patients with high MVI risk had the worst prognosis among the three groups, and major hepatectomy improved long-term outcomes in these high-risk patients.
DOI: 10.6084/m9.figshare.23634339.v1
title: Supplementary Material for: Preoperative prediction of microvascular invasion with gadoxetic acid-enhanced magnetic resonance imaging in patients with single hepatocellular carcinoma: The implication of surgical decision on the extent of liver resection

description: Introduction: Microvascular invasion (MVI) is one of the most important prognostic factors for hepatocellular carcinoma (HCC) recurrence, but its application in preoperative clinical decisions is limited. This study aimed to identify preoperative predictive factors for MVI in HCC and further evaluate oncologic outcomes of different types and extents of hepatectomy according to stratified risk of MVI. Methods: Patients with surgically resected single HCC (≤5 cm) who underwent preoperative gadoxetic acid-enhanced magnetic resonance imaging (MRI) were included in a single-center retrospective study. Two radiologists reviewed the images with no clinical, pathological, or prognostic information. Significant predictive factors for MVI were identified using logistic regression analysis against pathologic MVI and used to stratify patients. In the subgroup analysis, long-term outcomes of the stratified patients were analyzed using the Kaplan-Meier method with log-rank test and compared between anatomical and non-anatomical or major and minor resection. Results: A total of 408 patients, 318 men and 90 women, with a mean age of 56.7 years were included. Elevated levels of tumor markers (α-FP ≥25 ng/mL and PIVKA-II ≥40 mAU/mL) and three MRI features (tumor size ≥ 3 cm, non-smooth tumor margin, and arterial peritumoral enhancement) were independent predictive factors for MVI. As the MVI risk increased from low (no predictive factor) and intermediate (1–2 factors) to high-risk (3–4 factors), recurrence-free and overall survival of each group significantly decreased (P= 0.001). In the high MVI risk group, 5-year cumulative recurrence rate was significantly lower in patients who underwent major compared to minor hepatectomy (26.6 vs 59.8%, P= 0.027). Conclusion: Tumor markers and MRI features can predict the risk of MVI and prognosis after hepatectomy. Patients with high MVI risk had the worst prognosis among the three groups, and major hepatectomy improved long-term outcomes in these high-risk patients.
DOI: 10.6084/m9.figshare.21947681
title: Supplementary Tables showing metadata, run details, and amino acid sequence comparison analysis

description: West Nile virus lineage 1 metadata used for phylogenetic (S1 Table) and phylogegraphic (S2 Table) analyses; Run details reported for each of the 31 IZS-samples and negative controls (S3 Table);and amino acid sequence comparison (S4 Table).
DOI: 10.6084/m9.figshare.21947681.v3
title: Supplementary Tables showing metadata, run details, and amino acid sequence comparison

description: West Nile virus lineage 1 metadata used for phylogenetic (S1 Table) and phylogegraphic (S2 Table) analyses; Run details reported for each of the 31 IZS-samples and negative controls (S3 Table);and amino acid sequence comparison (S4 Table).
DOI: 10.6084/m9.figshare.21940898
title: Maximum-Likelihood Phylogeny - sequence alignment & tree files

description: West Nile virus lineage 1 tree files and sequence alignment used for phylogenetic analyses and included in the "Data Availability section" of the paper entitled "<em><strong>Origin and evolution of West Nile virus lineage 1 in Italy</strong></em><em>"</em>
DOI: 10.6084/m9.figshare.21940898.v3
title: Maximum-Likelihood Phylogeny - sequence alignment & tree files

description: West Nile virus lineage 1 tree files and sequence alignment used for phylogenetic analyses and included in the "Data Availability section" of the paper entitled "<em><strong>Origin and evolution of West Nile virus lineage 1 in Italy</strong></em><em>"</em>
DOI: 10.6084/m9.figshare.21940898.v2
title: Maximum-Likelihood Phylogeny - sequence alignment & tree files

description: West Nile virus lineage 1 tree files and sequence alignment used for phylogenetic analyses and included in the "Data Availability section" of the paper entitled "<em>Evolutionary dynamics of West Nile virus lineage 1 in Italy"</em>
DOI: 10.6084/m9.figshare.21940931
title: West Nile virus bayesian phylogeography_reduced dataset

description: West Nile virus lineage 1 phylogeographic analysis tree files and sequence alignment included in the "Data Availability section" of the paper entitled "<em><strong>Origin and evolution of West Nile virus lineage 1 in Italy</strong></em><em>".</em>
DOI: 10.6084/m9.figshare.21940931.v2
title: West Nile virus bayesian phylogeography_reduced dataset

description: West Nile virus lineage 1 phylogeographic analysis tree files and sequence alignment included in the "Data Availability section" of the paper entitled "<em><strong>Origin and evolution of West Nile virus lineage 1 in Italy</strong></em><em>".</em>
DOI: 10.6084/m9.figshare.21940931.v1
title: West Nile virus bayesian phylogeography

description: West Nile virus lineage 1 phylogeographic analysis tree files and sequence alignment included in the "Data Availability section" of the paper entitled "<em>Evolutionary dynamics of West Nile virus lineage 1 in Italy".</em>
DOI: 10.6084/m9.figshare.23631735
title: West Nile virus bayesian phylogeography_complete dataset

description: West Nile virus lineage 1 phylogeographic analysis, tree files, and sequence alignment obtained from the complete dataset of WNV L1 sequences included in the Data Availability section" of the paper entitled "<em><strong>Origin and evolution of West Nile virus lineage 1 in Italy</strong></em><em>".</em>
DOI: 10.6084/m9.figshare.23631735.v2
title: West Nile virus bayesian phylogeography_complete dataset

description: West Nile virus lineage 1 phylogeographic analysis, tree files, and sequence alignment obtained from the complete dataset of WNV L1 sequences included in the Data Availability section" of the paper entitled "<em><strong>Origin and evolution of West Nile virus lineage 1 in Italy</strong></em><em>".</em>
DOI: 10.6084/m9.figshare.23631735.v1
title: West Nile virus bayesian phylogeography_complete dataset

description: West Nile virus lineage 1 phylogeographic analysis, tree files, and sequence alignment obtained from the complete dataset of WNV L1 sequences included in the Data Availability section" of the paper entitled " <em><strong>West Nile virus lineage 1 in Italy</strong></em><em>".</em>