cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12826094.v4
title: OCT Raw scans - LR -Flume II

description: OCT scans at two lateral resolutions (40 um, 40 um, 2.18 um <i>x,y,z</i> respectively, labeled LR) and (11.1 um ,11.1 um and 2.18 um, labeled HR) were taken every 3 days in a 15 days experiment. LR scans have dimension 250 x 250 x 1024 pixels. HR scans are 900 x 900 x 1024 pixels, andtheir filename contains B1 (for the FFM) and B5 (for the SFM). Both HR and LR scans covered a total volume of 10 mm x 10 mm x 2.2 mm each. 66 x 3 low resolution (LR) scans covered an area of 0.4 m x 0.025 m in a tiled pattern. 3 x 3 high resolution (HR) scans were taken at the extremes of the same area of interest. Each scan (in .raw format) has a relative .json metadata file named accordingly. Files are labeled with the date and time of acquisition, while the last part of the file name identifies the tile. Days of biofilm development and replicate for each acquisition date are reported in the OCTScans_metadata.xls file.<br>
DOI: 10.6084/m9.figshare.23612686.v1
title: Number of trials to estimate the condition number in rye traits

description: ABSTRACT Multicollinearity must be diagnosed in multivariate analyses. Among the indicators, the condition number can be used to quantify the degree of multicollinearity. Hence, this study sought to determine the number of measurements (trials) necessary to estimate the number of condition in linear correlation matrices between rye traits. Five uniformity trials were carried out with ‘BRS Progresso’ rye, and eight morphological traits and eight productive traits were evaluated, forming two groups. In each group of traits, six cases (combinations of traits) were planned and the multicollinearity diagnosis was performed. Repeatability analyses were performed using the following methods: analysis of variance, principal component analysis, and structural analysis, and the number of measurements (trials) was determined for different levels of precision. A higher condition number of repeatability coefficients was obtained by the principal component methods (based on correlation and variance and covariance matrices) and structural analysis based on the variance and covariance matrix. A greater number of measurements (trials) is necessary to estimate the number of conditions in productive traits compared to morphological ones. One trial is enough to efficiently estimate the condition number with a minimum accuracy of 80% in morphological and productive traits of rye, whereas at least three trials are required for 95% accuracy.
DOI: 10.6084/m9.figshare.5104708.v1
title: Supplementary Material for: A chromosome inversion near the <i>KIT</i> gene and the Tobiano spotting pattern in horses

description: Tobiano is a white spotting pattern in horses caused by a dominant gene, <i>Tobiano</i><i>(TO)</i>. Here, we report <i>TO</i> associated with a large paracentric chromosome inversion on horse chromosome 3. DNA sequences flanking the inversion were identified and a PCR test was developed to detect the inversion. The inversion was only found in horses with the tobiano pattern, including horses with diverse genetic backgrounds, which indicated a common genetic origin thousands of years ago. The inversion does not interrupt any annotated genes, but begins approximately 100 kb downstream of the <i>KIT</i> gene. This inversion may disrupt regulatory sequences for the <i>KIT</i> gene and cause the white spotting pattern. This manuscript is accompanied by supplemental figures S1, S2 and S3, as well as supplemental Tables S1 and S2 (www.karger.com/doi/10.1159/000112065). The DNA sequence generated in this work has been submitted to GenBank under the following accession number: EF442014.
DOI: 10.17632/993hmyfw46
title: Agar dilution test and its Merits and Drawbacks in evolving dynamics of colistin susceptibility

description: The study was designed to evaluate the agar dilution method for colistin susceptibility in CRE isolates compared to CBDE. In the study, 108 carbapenem-resistant isolates were tested for Colistin susceptibility by Microbroth Dilution, agar dilution, and colistin broth disc elution. The comparisons were made using various statistical parameters. For all isolates, all three methods of colistin susceptibility were performed.MICs and interpretive categories were documented.
DOI: 10.3535/531-ecf-8r5
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7qw-yv3-ds2
title: Conichnus conicus Männil

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20022430.v1
title: Impact of the speech sound disorders: family and child perception

description: ABSTRACT Objective: to verify both the family’s and the children’s perception of the impact of the phonological type of speech sound disorders. Methods: this is an exploratory qualitative-quantitative prospective research of a Speech-Language Pathology Service of a Higher Education Institution. Sixty-four persons took part in the study, thirty-two being children (nineteen boys and thirteen girls), their age ranging from four years and one month to eight years and nine months, diagnosed with the phonological type of Speech Sound Disorder. Besides them, thirty-two adults, either their parents or guardians, participated in the study. The results were organized by degree of association - strong association, average association and average association with aspects of speech. Results: regarding the parents’ perception, the impact of Speech Sound Disorder on their children is related to interpersonal relationships and to emotional behavior, besides school issues. As for the children’s perception, the results demonstrated that the biggest impact of irregular speech takes place in unfamiliar environments. In addition to that, they have shown that isolation and the development of feelings such as frustration, shyness and low self-esteem are common among these children, making their relationship with other people difficult. Conclusion: the perception of parents and children regarding speech-related difficulties should be studied in order to reach both a better understanding and a more adequate treatment of Speech Sound Disorders.
DOI: 10.6084/m9.figshare.28270451.v3
title: DATASET: Seasonal dynamics of the nutritive value of temperate forage trees differ among species

description: This dataset is linked to the paper "Seasonal dynamics of the nutritive value of temperate forage trees differ among species" (Mesbahi et al., under review).The dataset consists of 285 samples of tree leaves from 2015-2017 at 14 sites across France in June, August, and October (i.e. from spring to autumn). We measured seven nutritive characteristics: <i>in vitro</i> dry matter digestibility (IVDMD) and the contents of crude protein (CP), dry matter (DM), neutral detergent fibre (NDF), acid detergent fibre (ADF), acid detergent lignin (ADL), and minerals.The statistical analysis was performed using the R software. It included model selection, ANOVA, and the estimation of marginal means for each characteristic. Subsequently, we clustered the tree species to simplify the presentation of the results for dissemination.<br>
DOI: 10.6084/m9.figshare.28451018.v1
title: Autism Awareness and Demographic Determinants: Parental Perspectives from Turkey

description: This study aims to examine the level of autism awareness among parents in Turkey and the demographic factors influencing this awareness. Using a mixed-methods research design, quantitative data were collected through the Autism Awareness Scale and a demographic information form, while qualitative data were obtained through semi-structured interviews with parents. A total of 310 parents participated in the study. Quantitative data were analyzed using SPSS, while qualitative data were evaluated through thematic analysis. Findings indicate that although parents have a high level of general knowledge about autism, their awareness levels remain moderate. Additionally, education level, socioeconomic status, and interaction with individuals with autism significantly influence awareness levels. Qualitative findings reveal parents' experiences with autism, their sources of information, and their perspectives on societal awareness. The study provides significant insights for the development of educational policies aimed at increasing autism awareness.
DOI: 10.17608/k6.auckland.21195283.v1
title: Raw Data: Study 3 MASE

description: Data used in study 3 of MASE development and validation.
DOI: 10.3535/jn8-3bj-yy9
title: Bioturbation trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p8w-5f1-dlw
title: Hyolithes sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7927958.v3
title: DNA methylation and functional characterization of the XIST gene during <i>in vitro</i> early embryo development in cattle

description: XIST, in association with the shorter ncRNA RepA, are essential for the initiation of X chromosome inactivation (XCI) in mice. The molecular mechanisms controlling XIST and RepA expression are well characterized in that specie. However, little is known in livestock. We aimed to characterize the DNA methylation status along the 5’ portion of XIST and to characterize its transcriptional profile during early development in cattle. Three genomic regions of XIST named here as promoter, RepA and DMR1 had their DNA methylation status characterized in gametes and embryos. Expression profile of XIST was evaluated, including sense and antisense transcription. Oocytes showed higher levels of methylation than spermatozoa that was demethylated. DMR1 was hypermethylated throughout oogenesis. At the 8–16-cell embryo stage DMR1 was completed demethylated. Interestingly, RepA gain methylation during oocyte maturation and was demethylated at the blastocyst stage, later than DMR1. These results suggest that DMR1 and RepA are transient differentially methylated regions in cattle. XIST RNA was detected in matured oocytes and in single cells from the 2-cell to the morula stage, confirming the presence of maternal and embryonic transcripts. Sense and antisense transcripts were detected along the XIST in blastocyst. <i>In silico</i> analysis identified 63 novel transcript candidates at bovine XIST locus from both the plus and minus strands. Taking together these results improve our understanding of the molecular mechanisms involved in XCI initiation in cattle. This information may be useful for the improvement of assisted reproductive technologies in livestock considering that <i>in vitro</i> conditions may impair epigenetic reprogramming.
DOI: 10.17632/4w2f8pwj6s
title: GAMA Adolescent Health Indicator Mapping
DOI: 10.17632/n3jpm652my
title: Mediación tecnológica y humanización del cuidado de enfermería: revisión sistemática de literatura

description: Introducción: Uno de los propósitos de la formación en enfermería es proveer al sistema de salud de profesionales altamente competentes y orientados a la generación de prácticas de cuidado humanizadas desde su quehacer cotidiano. Para lograr este propósito es fundamental identificar las necesidades que surgen dentro de los procesos de enseñanza y establecer claramente cómo el uso pedagógico de las tecnologías puede mejorar los entornos de aprendizaje. Objetivo: Indagar y evaluar críticamente el aporte de la tecnología al fortalecimiento de la humanización del cuidado en el campo de la Enfermería. Materiales y Métodos: Enfoque metodológico para revisiones sistemáticas de literatura definido por Okoli, que implica seguir un proceso riguroso y estandarizado para identificar, evaluar y sintetizar de manera sistemática y explícita el cuerpo existente de investigaciones. Se seleccionaron inicialmente 51 artículos para su análisis. Tras aplicar los criterios de exclusión, se extrajeron y revisaron 26 estudios identificando las categorías que destacan la influencia positiva de la tecnología en las competencias cognitivas, psicomotoras y afectivas. Posteriormente se ejecutó la redacción del documento con los principales hallazgos. Resultados: los hallazgos revelan la efectividad de diversos ambientes tecnológicos en la formación de enfermería, destacando la priorización de competencias vinculadas con el conocer y hacer. Sin embargo, se observa una tendencia a subestimar las competencias afectivas cruciales para el cuidado humanizado. Discusión: Los resultados revelan un panorama diverso sobre el impacto de diversas tecnologías en el desarrollo de competencias en enfermería, destacando tanto fortalezas como limitaciones. Se enfatiza la capacidad de estas herramientas para crear entornos de aprendizaje inmersivos y realistas, aunque se reconoce la necesidad de profundizar en competencias que fomenten el cuidado humanizado. Conclusión: Se requiere de investigaciones futuras para comprender el aporte de las tecnologías en el saber ser, actitudes y valores del profesional en formación, para promover un cuidado de enfermería humanizado.
DOI: 10.3535/12a-vx3-vx0
title: konglomeraat, veeristel Trypanites isp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/db0-w6s-he2
title: Cyclocrinites C.E.I. von Eichwald, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16571330.v3
title: USP5 attenuates NLRP3 inflammasome activation by promoting autophagic degradation of NLRP3

description: The NLRP3 (NLR family pyrin domain containing 3) inflammasome is involved in diverse inflammatory diseases, thus strict control of its activation is necessary to prevent excessive inflammation. Protein ubiquitination has been reported to regulate the assembly, protein expression and activation of the NLRP3 inflammasome. Until now, several deubiquitinases (DUBs) have been reported to affect the degradation of NLRP3 through the proteasome pathway. However, there is no research on DUBs regulating NLRP3 degradation through macroautophagy/autophagy. Here, we demonstrated the pivotal function of USP5 (ubiquitin specific peptidase 5) in restraining the activation of the NLRP3 inflammasome independent of its deubiquitinating enzyme activity. USP5 selectively promoted K48-linked polyubiquitination of NLRP3 and mediated its degradation through the autophagy-lysosomal pathway by recruiting the E3 ligase MARCHF7/MARCH7. Knockdown of <i>USP5</i> facilitated the two-signal model of lipopolysaccharide and ATP-triggered IL1B/IL-1β production. Simultaneously, USP5 overexpression <i>in vivo</i> reduced IL1B and polymorphonuclear (PMN) infiltration in alum-induced peritonitis. Overall, the data revealed that USP5 is a key scaffold protein recruiting the E3 ligase MARCHF7 to NLRP3, and promoting autophagic degradation of NLRP3. The findings provide new insight into USP5 in the regulation of excessive activation of the NLRP3 inflammasome and inflammatory innate immune response. 3-MA: 3-methyladenine; AIM2: absent in melanoma 2; ATG5: autophagy related 5; BafA1: bafilomycin A<sub>1</sub>; CASP1: caspase 1; CHX: cycloheximide; Co-IP: co-immunoprecipitation; CQ: chloroquine; DUBs: deubiquitinases; IL1B/IL-1β: interleukin 1 beta; LAMP1: lysosomal associated membrane protein 1; LPS: lipopolysaccharide; MARCHF7/MARCH7: membrane associated RING-CH-type finger 7; NFKB/NF-κB: nuclear factor kappa B; Nig.: nigericin; NLRC4: NLR family CARD domain containing 4; NLRP3: NLR family pyrin domain containing 3; PECs: peritoneal exudate cells; PMN: polymorphonuclear; PMs: peritoneal macrophages; PYCARD/ASC: PYD and CARD domain containing; TLRs: toll like receptors; TNF/TNF-α: tumor necrosis factor; Ub: ubiquitin; USP5: ubiquitin specific peptidase 5; WT: wild type.
DOI: 10.6084/m9.figshare.19551883.v1
title: Appendix A.xlsx

description: The supplement provides all the coefficients derived in Icen and Sandıkkaya 2022 study.
DOI: 10.3535/4lg-zax-1qb
title: Hyolithes latus?

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/btg-25k-vtb
title: †Platysolenites Pander in Eichwald, 1854

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mla-acl-9t1
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.2290363.v1
title: Devonian magmatism in the accretionary complex of southern Chile.

description: Table S1. U-Pb SHRIMP data for Devonian rocks
DOI: 10.6084/m9.figshare.28159586.v1
title: Supplement VI for “Recombinant expression of receptor binding domains of all eight subtypes of botulinum neurotoxin type A for generation of antitoxins with broad reactivity”.

description: Supplement VI for “Recombinant expression of receptor binding domains of all eight subtypes of botulinum neurotoxin type A for generation of antitoxins with broad reactivity”.
DOI: 10.6084/m9.figshare.6930509.v1
title: Supplementary methods and analysis from Sperm morph and remating frequency in the Indian meal moth, <i>Plodia interpunctella</i>

description: Methods and analysis details including R code for Thorburn et al
DOI: 10.3535/t7f-tv4-yrl
title: Mollusca

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.17049824.v1
title: Terrestrial invertebrate abundance

description: This dataset contains data relative to the abundance of terrestrial invertebrate that were found inside aluminum cups filled with different type of aquatic organic matter (Algae, Chironomidae larvae and Fish). The aluminum cups were placed in two different terrestrial habitats (ERS and Riparian zone). <br>
DOI: 10.6084/m9.figshare.17942558.v3
title: Prevalence of Risk Factors for Obesity, Diabetes Mellitus and Hypertension in High School Children and Screening of High-risk Children for Glycosuria – A cross-sectional study in Dharwad District, India

description: A cross-sectional study was conducted in Dharwad district, India including 1600 students between 11-17 years age group, across both private and government schools located in both rural and urban areas; information on socio-demographic variables, physical activity, dietary habits, substance abuse, and family history of hypertension, diabetes mellitus and level of stress among participants was collected. Anthropometric measurements were taken, blood pressure was measured, general physical examination was done to look for signs of insulin resistance. Urine was examined for the presence of glucose using Urine Glucose Strips in overweight children with ≥2 risk factors (ADA criteria for children).
DOI: 10.3535/ar9-bcb-mpw
title: Mastopora C.E.I. von Eichwald, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/chd-8ep-gqn
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sly-gdn-bb2
title: †Skenidioides Schuchert & Cooper, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xq0-0dg-raj
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21213042.v1
title: Validity evidence of the Academic Procrastination Scale for undergraduates

description: Abstract The objective of this study is to analyze the validity evidence of the Academic Procrastination Scale (APS) in a sample consisting of 1979 students from public and private universities, from different courses, 67% of the students being women, aged 18 to 68 years old (M = 22.84). The principal component analysis revealed two components, also validated by confirmatory analysis, which showed a good overall fit of a two-dimensional model: Daily Study Procrastination (a = 0.75) and Exam Study Procrastination (a = 0.75). Internal consistency was estimated through Cronbach’s alpha, obtaining 0.83 for the total scale. The study concludes that APS has satisfactory psychometric properties and suggests further validation studies and also analysis of academic procrastination in higher education students.
DOI: 10.6084/m9.figshare.3554385.v1
title: Appendix A. Full reference list for studies considered in Supplement 1.

description: Full reference list for studies considered in Supplement 1.
DOI: 10.17632/y7jkjt9jjf
title: Diaphragm control valve model estimation - algorithms and experimental data

description: This dataset has the open and closed loop algorithms used to estimate a diaphragm control valve using the He, Choudhury, Kano, Karnopp, LuGre and GMS friction models. Yet, it has all the experimental data used to model an industrial diaphragm valve. The user has to compile the code and update the correct directories to run the algorithms.
DOI: 10.25387/g3.13573505.v1
title: Supplemental Material for Pook et al., 2021

description: Figure S1: Genetic gain in the reference dairy cattle breeding scheme (Figure 2) with 95% confidence bands for the trait RZE (type). This figure is an exemplary output of the "True Breeding values"-module in MoBPSweb (www.mobps.de).<br>Figure S2: Genetic gain in the reference dairy cattle breeding scheme (Figure 2) with 95% confidence bands for the trait RZR (fertility). This figure is an exemplary output of the "True Breeding values"-module in MoBPSweb (www.mobps.de).<br>Figure S3: Genetic gain in the reference dairy cattle breeding scheme (Figure 2) with 95% confidence bands for the trait RZS (somatic cell score). This figure is an exemplary output of the "True Breeding values"-module in MoBPSweb (www.mobps.de).<br>Figure S4: Genetic gain in the reference dairy cattle breeding scheme (Figure 2) with 95% confidence bands for the trait RZKm (calving traits). This figure is an exemplary output of the "True Breeding values"-module in MoBPSweb (www.mobps.de).<br>Figure S5: Prediction accuracy of the breeding value estimation for the different scenarios. Prediction accuracy is defined here, as the correlation between the estimated breeding value (ssBLUP_BVE, pedigree_BVE) / phenotypes (Baseline, Low_SelectionIntensity, Change_IndexWeights) and the underlying true genomic values.<br>File S1: JSON-files generated in MoBPSweb for the scenarios compared ("Baseline", "pedigree_BVE", "ssBLUP_BVE", "Low_SelectionIntensity", "Change_IndexWeights")<br>File S2: JSON-files generated in MoBPSweb for an exemplary commercial layer breeding program.<br>File S3: JSON-files generated in MoBPSweb for a horse breeding program.<br>File S4: JSON-files generated in MoBPSweb for the cock rotation breeding program. <br>File S5: JSON-files generated in MoBPSweb for the generation of a MAGIC population in maize.<br>File S6: Exemplary R-script to simulate the reference dairy cattle breeding scheme (Figure 2).
DOI: 10.3535/5yz-b6f-pdj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7yf-e80-x47
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3v9-m6k-yzx
title: Bioturbation trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9ge-l6c-11s
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14604519.v1
title: Altmetric Articles 2017-2020.xlsx

description: This is an initial foray into determining whether researchers at the University of Winchester are more likely to choose Open Access publication for outputs which they perceive to be of higher quality. Data on articles published between 2017 and 2020 was downloaded from Altmetrics and ranked according to Altmetric score, Mendeley readers, Dimensions citation count, and a mean institutional ranking based on these three aspects.