cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/mw6c5d6mv7
title: SPATIAL AND TEMPORAL HOMOGENEITY OF T-CELL RECEPTOR GAMMA CHAIN REARRANGEMENTS IN MYCOSIS FUNGOIDES: A NEXT GENERATION SEQUENCING ANALYSIS. Supplemental Table 1

description: data based on NGS applied to clonality assessment of sequential and simultaneous cutaneous samples from patients with Mycosis Fungoides (MF)
showed completely identical molecular sequences in all samples from a given patient supporting the concept of MF as a disease involving a unique
and stable clone simultaneously present in multiple, sometimes remote skin lesions. These data should be taken in account when building hypothesis
regarding the pathomechanisms of this condition. Table 1 briefly summarizes clinical and molecular data of patients under scope.
DOI: 10.17632/n9sdckn657
title: LINF_360066700

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/smtxktdtfc
title: BXSB_mice_CD20_BZR_repertoire, Werner et al

description: We investigated if a short-term B cell depletion during the pre-clinical phase of SLE in BXSB mice influences the B cell receptor repertoire. We could show that male BXSB mice treated with an anti-CD20 monclonal antibody show reduced diversity for IgG VDJ recombinations. To perform this analysis Next Generation Sequencing was performed by on the Illumina MiSeq platform using a pair of overlapping paired-end reads (2x300 bp). 20 % PhiX was added for improved performance. Paired-end reads were merged with the IgRepertoireConstructor (Safonova et al., 2015). Read Quality was ensured by FASTQC quality analysis by MultiQC (Ewels et al., 2016). Molecular amplification fingerprinting (MAF) error correction was achieved with unique molecular identifiers (UMI) as part of the cDNA synthesis and Multiplex Primers. PCR sequencing errors were corrected by pattern matching and filtering sequences containing both UMIS and correcting sequencing errors without introducing bias to read counts. Sequences were separated according to the individual immunoglobulin specific primers (TAK_402, TAK_403, TAK_IgM, TAK_IgA) and VDJ annotation was conducted with the IMGT/HighV-QUEST service (Alamyar et al., 2012). Sequences using the IgM, IgG1/2 or IgA specific primer were further analyzed with ARGalaxy immune receptor pipeline (IJspeert et al., 2017). Folder contains final data analyzed by ARGalaxy
DOI: 10.17632/pntsscd23b
title: DETERMINATION OF THE PLASTICITY INDEX USING SLOPE OF FALL CONE FLOW CURVE   

description: This paper presents two simple equations that can be used to compute the plasticity index of soil using the correlation between the slope of the British fall cone flow curve and the plasticity index. The models were developed using British fall cone test results using soils of widely varying plasticity, including commercial bentonite
DOI: 10.17632/rpcv2y2mgz
title: LINF_110006000

description: cdc2-related kinase 8 | CRK8; Leishmania infantum (strain JPCM5)
DOI: 10.17632/zv9pdy7m29
title: Tables in the article " Mineralogical and geochemical characteristics and ore-forming mechanism of hydrothermal sediments in the middle and southern Okinawa Trough ", Marine Geology.

description: The original data presented here is related to the article "Mineralogical and geochemical characteristics and ore-forming mechanism of hydrothermal sediments in the middle and southern Okinawa Trough", Marine Geology. The data includes sampling information of investigated hydrothermal sediment samples collected from four hydrothermal fields in the middle and southern Okinawa Trough, chemical composition of carbonate-free fraction, characteristics of NASC normalized REE parameters of sediment samples in this study and relevant geologic end members, characteristics of (Gd/Yb)N, percentage of heavy minerals, δEu values of carbonate-free fraction in sediment samples from four hydrothermal fields in the middle and southern Okinawa Trough, and Average values of element enrichment factors of sediment samples in this study. These data can provide useful information to understand the origin and ore-forming mechanism of the hydrothermal sediments, and to provide indicators for hydrothermal activities in the Okinawa Trough.
DOI: 10.17632/4v3n97b4s8
title: BranSugarBiscuit_Food Hydro

description: Research data of combined bran enrichment and sugar reduction in biscuit
DOI: 10.17632/8t5y7zrg57
title: Flexible and robust low-loss selenium-based multimaterial infrared fibers towards CO2 laser ablation - date and code

description: Small-scale CO2 laser energy delivering medium capable of performing stable, flexible and high-strength is crucial in extreme CO2 laser processing environments, especially for minimally invasive surgery operating in environment with high-humidity, twisty and narrow channel. In this paper, we proposed flexible and robust multimaterial infrared fibers made of selenium-based chalcogenide glasses and thermoplastics polymer with low optical loss of 7.18 dB/m at 10.6 μm. The fibers were fabricated by a hybrid process combining double-crucible method and fiber thermal drawing method. Customized composites of commercial polyphenylene sulfone resins and polyvinylidene fluoride were used as the jackets, thereby the fibers exhibited hydrophobicity, thermostability, high tensile strength up to 10 MPa and low bending stiffness as low as 8.48×10-7 N·m2. Moreover, it was demonstrated that the fiber can be used to deliver CO2 laser energy for fabric cutting and biological tissue ablation, making them attractive for CO2 laser material processing, especially in minimally invasive laser surgery.
DOI: 10.17632/9c63f8x3sb
title: Increased CD69+CCR7+ circulating activated T Cells and STAT3 expression in cutaneous lupus erythematosus patients recalcitrant to antimalarials

description: Immunohistochemistry unprocessed images for the manuscript:
Increased CD69+CCR7+ circulating activated T Cells and STAT3 expression in cutaneous lupus erythematosus patients recalcitrant to antimalarials 

Majid Zeidi1,2, Kristen L. Chen1,2, Jay Patel1,2, Krisha Desai1,2, Hee Joo Kim1,2, Srita Chakka2, Rachel Lim1, Victoria P. Werth1,2

1Corporal Michael J. Crescenz VAMC, Philadelphia, PA
2Department of Dermatology at the Perelman School of Medicine at the University of Pennsylvania
DOI: 10.17632/bfr7fygm9h
title: Data: In situ synchrotron x-ray radiography data - Laser spot melting of pure nickel

description: In situ synchrotron x-ray radiography; Single spot melting and solidification; Pure nickel; Beamline 32-ID, APS
Link to the radiography data provided in: "In-situ Measurement Details" (Access Restricted)
DOI: 10.17632/tx765ct8sc
title: LINF_230005700

description: agmatinase-like protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/zt52h4j3tn
title: LINF_170010400

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/3v4d8f4bw7
title: LINF_250025200

description: CCR4-NOT transcription complex subunit
Leishmania infantum (strain JPCM5)
DOI: 10.17632/vhm7zh5ssp
title: Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2. Hekman et al.

description: Raw imaging data and supplemental information for "Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2" by Hekman et al.
DOI: 10.17632/53rwrg4nym
title: Accuracy of applications to monitor food intake: Evaluation by comparison with 3-d food diary

description: The aim of this study was to assess the accuracy of nutrient intake calculations from some of the leading apps.
DOI: 10.17632/cpvj7522p9
title: LINF_260006700

description: 60S ribosomal protein L7; Leishmania infantum
DOI: 10.17632/cs6brkw4zr
title: Hepatoprotective and Antioxidant Potential of Elaeagnus Angustifolia Extract

description: Currently, chemical drugs are used to treat liver disease, which is associated with serious side effects. Also, these common drugs and treatments, which are available to patients with liver disease, have high costs, especially in developing countries, and these treatments and medications can cause side effects and other harms. This study investigated the protective and antioxidant effects of Elaeagnus angustifolia fruit on liver damage. The findings of this study showed that Elaeagnus angustifolia fruit may reduce oxidative stress and have liver protection effects due to the presence of flavonoids and phenolic groups. This study was performed on 28 male rats. The rats were divided into 4 groups consisting of 7 rats per each group including control group, CCl4-induced liver damage group, the group received a low dose (100 mg/kg) of EAFE, and the group received a high dose (400 mg/kg) of EAFE. Toxicity induction by oral gavage was done for 28 days. On day 29, the injury was induced in the liver damage group and the groups receiving the extract. After 72 h of induction, blood and urine samples were collected and analyzed for biochemical and oxidative stress markers and also liver tissue was evaluated for pathological examination. Our results showed that oral administration of both 100 and 400 mg/kg of EAFE decreased serum levels of liver enzymes of aspartate aminotransferase (AST) and alanine aminotransferase (ALT) after CCl4 toxicity. Also, EAFE was able to significantly reduce serum level of malondialdehyde (MDA) compared to its level in the CCl4-induced liver damage group and increased level of total antioxidant capacity, which was reduced in the CCl4-induced liver damage group and brought it closer to that of the control group. Notably, EAFE significantly reduced serum levels of urea, creatinine, and uric acid, which were elevated in the CCl4-induced liver damage group. These findings were confirmed by histopathological observations where EAFE was able to reduce the toxic effects of CCl4 on hepatocytes, as observed in animals with CCl4-induced liver damage. Findings of this study revealed that pretreatment with Elaeagnus angustifolia extract caused a marked improvement in biochemical and oxidative stress markers and also histopathological parameters following injury induction by CCl4 in rats҆ liver and it may have potential therapeutic properties in the condition of liver damage.
DOI: 10.17632/g9tpsdctt4
title: 20S and 26S Proteasome-binding proteins of the rabbit brain: a proteomic dataset

description: Fractions of 26S and 20S proteasomes isolated from the rabbit brain by the method of salt fractionation (salt-induced precipitation) contain intrinsic proteasome proteins responsible for assembly of the core particle and regulatory particle of proteasome and also proteasome-binding proteins. These proteasome-binding proteins include components of the ubiquitin-proteasome system, some ubiquitinated proteins, as well as cytoskeleton components, protective proteins, regulators of gene expression, cell division, and differentiation, and multifunctional proteins (mainly, glycolytic enzymes: glyceraldehyde-3-phosphate dehydrogenase (GAPDH), aldolase, pyruvate kinase, etc.). The multifunctional proteins are also known as “moonlighting proteins” are involved in various (regulatory) processes in the cell and this suggests that they represent important components of the proteasome interactome rather than contaminants of the 26S and 20S proteasome fractions. Data obtained by high-resolution mass spectrometry in Ubiquitine-tag triggered MS3-mode with synchronous fragment ions selection, and nano-flow liquid chromatography (see "Steps to reproduce for details). The presented dataset comprised of two subsets: (1) Data of proteomes obtained for each animal under the study; these data are in Excel format and contain necessary information about proteins, peptides, fragments, and their abundance, and other related meta-data. Data contained specific modifications identified in peptides by the PSMs. (2) Combined data for the complete cohort of animals with protein distribution. Both subsets also contain information about semi-quantitative protein representation estimated by the NSAF algorithm in the Search GUI/Peptide Shaker search engine.
DOI: 10.17632/rd6rm8zpfp
title: Data for: Electrons Irradiation of III-V//Si Solar Cells for NIRT Conditions

description: Solar cells characterization at BOL and EOL. PC1D simulation parameters.
DOI: 10.17632/rbzc9ywcxh
title: Layered gabbros and peridotites from Piton des Neiges volcano, La Réunion Island

description: Whole-rock and mineral compositions of Layered gabbros and peridotites from Piton des Neiges volcano, La Réunion Island
DOI: 10.17632/v3bt85fxch
title: Elucidating insect phylogeny and evolution

description: Model dependency in insect phylogenomics, as demonstrated on a 89-gene Droposhila dataset taken from Rota-Stabelli et al. (2020).
DOI: 10.17632/wcm644v2h5
title: Data for: A systematic mapping study of developer social network research

description: Metadata from the mapping study
DOI: 10.17632/hptbgydhyg
title: Self-assessment of physical health, perceived threat from COVID-19 and mental resilience among people diagnosed and undiagnosed with mental disorders

description: Data was collected from 11 November 2020 to 03 April 2021 in Bulgaria both online and offline. The participants in the study were 268 divided into four groups equal in number (N = 67) – mentally ill people diagnosed with schizophrenia or bipolar disorders who were pensioners because of their disease or unemployed; students and workers in the area of healthcare; students and workers in other occupational fields such as economy, education, law, and information technologies (IT); and athletes who practiced sport more than once per week. In total, 201 subjects (75%) in good mental health, undiagnosed with a mental disease were compared with 67 mentally ill subjects (25%) diagnosed with schizophrenia (N = 50) or bipolar disorders (N = 17). The participants self-assessed their physical health on a scale from 0 (very poor) to 10 (very good). The participants self-assessed the perceived threat from COVID-19 by means of a questionnaire comprising of five dichotomous items whose score ranged from 0 to 5 - as perceived threat for themselves, their relatives, their familiar acquaintances, unfamiliar citizens of the country, and foreigners. Connor-Davidson Resilience Scale - CD-RISC2 (Vaishnavi et al., 2007) was applied for measuring mental resilience. CD-RISC2 is a copyright -protected instrument and its items are presented only with their numbers, not with their content. The answers on both items from CD-RISC 2 were given on a 5-point scale from 0-not true at all, to 4 - true nearly all the time. Data were statistically processed by means of software JASP 0.14 (JASP Team, 2020). Acknowledgments The authors thank Prof. Jonathan Davidson for permitting to use The Connor-Davidson Resilience scale (CD-RISC2). This research did not receive any specific grant from funding agencies in the public, commercial, or not-for-profit sectors. References JASP Team. (2020). JASP (Version 0.14) [Computer software]. https://jasp-stats.org/faq/ Vaishnavi, S., Connor, K., & Davidson, J. R. (2007). An abbreviated version of the Connor-Davidson Resilience Scale (CD-RISC), the CD-RISC2: Psychometric properties and applications in psychopharmacological trials. Psychiatry Research, 152(2-3), 293–297. https://doi.org/10.1016/j.psychres.2007.01.006
DOI: 10.17632/669my8r6p9
title: LINF_250025900

description: phosphopantothenate-cysteine ligase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/d4wmrsj4dy
title: German Land Price Data Braun-Lee RSUE 2021

description: German Land Price Data Braun-Lee RSUE 2021 on a county level. Data from "The Prices of Residential Land in German Counties".
DOI: 10.17632/rbr3w6rr76
title: LINF_320036400

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/s8s6wk32fy
title: 2022_0608_PRIDEGBA_Dataset_cyy_v3

description: The data sets about the PRIDE-GBA campaign used to evaluate the conclusions in the study.
DOI: 10.17632/hrjjcr43nx
title: The accuracy of detecting melanoma on frozen section MART-1 stains and on permanent sections of previously-frozen tissue: a prospective cohort study (Supplemental Data)

description: Mendeley Supplemental eTable 1: Diagnostic Categories of Pathological Interpretations eFigure 1: Discordant Case Analysis
DOI: 10.17632/kzgtyjv4mr
title: undERGO - Consolidated Data

description: Data from the survey
DOI: 10.17632/n5hdrj7hk4
title: Supplementary data for manuscript: "Co-existing neuropeptide FF and gonadotropin-releasing hormone 3 coordinately modulate male sexual behavior"

description: Animals properly perform sexual behaviors by using multiple sensory cues. However, neural mechanisms integrating multiple sensory cues and regulating motivation for sexual behaviors remain unclear. Here, we focused on peptidergic neurons, terminal nerve gonadotropin-releasing hormone neurons, and analyzed its functions.  This dataset includes supplementary information for manuscript: "Co-existing neuropeptide FF and gonadotropin-releasing hormone 3 coordinately modulate male sexual behavior".
DOI: 10.17632/p85pt8bc65
title: LINF_350034700

description: Leucine carboxyl methyltransferase | LCM1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/vjygzcz5rv
title: LINF_250009900

description: Kringle domain containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/yp4zxszkgx
title: Morphological and anatomical characteristics of leaves and cones in Juniperus seravschanica Kom.: Studies of polyphenolic parenchyma cells, secretory tissues, sclereids and tracheids

description: Conifers are long-lived species that cope with multiple abiotic and biotic stresses. Juniperus seravschanica Kom. is an important tree distributed in southeastern Iran. Morphological and anatomical traits of different leaves (cotyledonary, needle like and scaly leaves) and cones (male and female) were studied and compared. The species is frost and drought tolerant and grows at altitudes 2200-3800m on normal, chalky, calcareous, rocky and mountainous outcrops together with other species or as pure patches. The morphological studies showed that seedlings and young plants leaves were small and needle-like while main leaves of adult plants were scale-like, appressed and overlapping; there was a conspicuous resin gland in outer surface of scaly leaves secreting a sticky resinous substance that dries into a white material, particularly in damaged leaves. Anatomical studies showed that epidermis was thick with thicker outer walls and sunken stomata; hypodermis showed 1-3 layers of lignified cells with very thick walls and narrow lumen. The palisade parenchyma was observed in both sides. Sclereids, phenolic- and starchy cells were observed in leaves particularly scaly leaves. Male cones were small size with overlapping and decussate scales in which resin glands and phenolic cells were also observed. Similarly, female cones had overlapping and decussate scales that survive 1-3 years and become fleshy, berry-like and bluish during development. They revealed the presence of numerous resin glands, thick epidermis, phenolic and sclereid cells as well. Tracheids were narrow in leaves and cones. These characteristics help the species to survive in different stressful conditions.
DOI: 10.17632/46bv4tmdx2
title: Supplemental material - Herrera et al.

description: Fig S1. Selected spectra of whole milk powder (A) and yoghurt powder (B) dried at different 
temperatures and spreading thickness by refractance window and Freeze-drying. (---) 40°C -
0.00161 m, (---) 40°C - 0.003 m, (---) 52°C - 0.001 m, (---) 80°C – 0.001 m, (---) 80°C –
0.003 m , (---) Freeze-drying.
Table S1. Multiple comparisons test between pH values, solubility, and hygroscopicity of 
powders obtained at different drying conditions.
Table S2. Positions of the peaks for each protein structure of whole milk powder at 
different temperatures and spreading thickness.
Table S3. Positions of the peaks for each protein structure of yoghurt powder at different 
temperatures and spreading thickness.
Table S4. Multiple comparisons test between the position of each peak for powders obtained 
at different drying conditions.
Table S5. Multiple comparisons test between intensities (FTIR) of powders obtained at 
different drying conditions.
DOI: 10.17632/2yymscpbt2
title: LINF_320006400

description: Flagellum attachment zone protein 9 | FAZ9
Leishmania infantum (strain JPCM5)
DOI: 10.17632/hzdxwvtd89
title: LINF_140019800

description: delta-4 fatty acid desaturase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/248m6yh2yv
title: LINF_360005200

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/bbkcvwnw2t
title: Raw data on the soilphysicochemical properties under the canopy of some agroforestry tree species

description: This data was collected from the parkland agroforestry under the canopy of Croton macrostachyus and Erythrina brucei in Chencha Woreda Ayira kebele, Gamo zone, Southern Ethiopia and analyzed at Addis Ababa, Engineering Corporation of Oromia laboratory and it is our original data.
DOI: 10.17632/g5kwr4tb8k
title: Crown morphometry

description: Morphometric data of Pterocarpus angolensis and Bobgunnia madagascariensis
DOI: 10.17632/jcr4mpyc6n
title: Pumping Duration Data with units

description: Completion data including pumping duration for hydraulic fracturing jobs with associated units for variables
DOI: 10.17632/pynjpsg4bm
title: Dataset for the article 'A fundamental investigation on supercritical carbon dioxide energetic, exergetic and entropy behavior in parabolic trough solar collector'

description: please follow the methodology in the manuscript for research replication
DOI: 10.17632/z88xjp6kk6
title: LINF_320037050

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/s9mvtcnnpm
title: LINF_140006800

description: Thioredoxin-like Leishmania infantum (strain JPCM5)
DOI: 10.17632/vhv8n42dsw
title: CAPSULAR DISSECTION REDUCES RECURRENT LARYNGEAL NERVE INJURY AND HYPOCALCEMIA IN THYROIDECTOMY

description: Methods: The study objective was to detect the incidence of hypocalcaemia and recurrent laryngeal nerve palsy in patients undergoing total thyroidectomy with capsular dissection technique. This was a prospective cohort study, done on 178 patients who underwent total thyroidectomy. Patients were recruited for 6 months from June 2019 to November 2019. After surgery, they were followed up for 9 months with calcium estimation and indirect laryngoscopy as per pre-determined schedule.

Results: Out of the 178 patients studied, 19.1% (34) developed hypocalcaemia during the follow up. Among these, 0.6% (1) developed permanent hypocalcaemia while 18.5% (33) developed temporary hypocalcaemia. 5.1% (9) patients developed temporary laryngeal nerve palsy and none (0) developed permanent laryngeal nerve palsy. Larger nodules were associated with more incidence of hypocalcemia while smaller nodules are associated with nerve palsy.
DOI: 10.17632/v8bsbct55n
title: Potentilla sericea stress-responsive spermine synthase PsSPMS enhances cadmium tolerance in Arabidopsis thaliana-qPCR/physiological

description: The manuscript dataset entitled "Potentilla sericea stress-responsive spermine synthase PsSPMS enhances cadmium tolerance in Arabidopsis thaliana" includes data and calculations for fluorescence quantification.