cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.uyegxq
title: Occurrence Download

description: A dataset containing 236501 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Knautia arvensis (L.) Coult.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 236501 records from 604 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002658-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5vdc4p
title: Occurrence Download

description: A dataset containing 1679309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Podiceps auritus (Linnaeus, 1758))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1679309 records from 450 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056896-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhzcxk
title: Occurrence Download

description: A dataset containing 1495 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Insectos en el municipio de Medina, Cundinamarca - Proyecto Colombia Bio"
 ]
}

 The dataset includes 1495 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053919-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bw27rl
title: Occurrence Download

description: A dataset containing 1245882 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myiarchus crinitus (Linnaeus, 1758)"
 ]
}

 The dataset includes 1245882 records from 172 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029807-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dveybn
title: Occurrence Download

description: A dataset containing 79651 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rattus rattus (Linnaeus, 1758)"
 ]
}

 The dataset includes 79651 records from 333 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018353-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6pzrn
title: Occurrence Download

description: A dataset containing 2476 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhus trilobata Nutt.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2476 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058644-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zndj4v
title: Occurrence Download

description: A dataset containing 247 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Doronicum pardalianches",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 247 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009394-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25442/hku.29992498
title: Supporting data for "Developing a Relapse Prevention Model and Intervention for Residential Substance Use Treatment"

description: <b>Background:</b> Relapse rates following residential substance use disorder (SUD) treatment remain high, with the transition from structured residential care to community living representing a period of extreme vulnerability. Existing relapse prevention models and interventions inadequately address the unique ecological discontinuities and empirically-validated risk and protective factors specific to this critical transitional phase.<b>Objectives:</b> This multi-phase sequential study aimed to develop and preliminarily evaluate a relapse prevention model and intervention, specifically designed for individuals preparing for discharge from residential SUD treatment.<b>Methods:</b> The research employed a five-phase design: (1) systematic meta-analysis quantifying risk and protective factors for post-residential relapse; (2) scoping review mapping current relapse prevention interventions in residential settings; (3) theoretical development of a relapse prevention model synthesizing empirical findings; (4) operationalization into a manualized 8-session intervention protocol; and (5) single-group pilot study evaluating feasibility, acceptability, and preliminary effectiveness in a Hong Kong residential treatment center.<b>Results:</b> The meta-analysis identified potent risk factors including heavy pre-treatment substance use (OR=11.27), treatment non-completion (OR=3.86), and substance-using social networks (OR=3.15), alongside protective factors including positive therapeutic alliance (OR=3.33), employment (OR=2.96), and aftercare engagement (OR=1.73). The scoping review revealed critical gaps in transition-focused interventions. The Transitional Relapse Intervention and Prevention (TRIP) model integrates four evidence-based components: Connection and Commitment, Core Skills for Relapse Prevention, Pro-Recovery Social and Environment, and Structured Transition Planning and Management. The pilot study demonstrated high feasibility and acceptability, with significant pre-post improvements in psychological distress, self-efficacy, and adaptive coping strategies. At six-month follow-up, 56.7% of participants maintained abstinence, with those remaining abstinent showing significantly greater increases in self-efficacy and reductions in substance-use coping during the intervention.<b>Conclusions:</b> The TRIP framework addresses critical theoretical and practical gaps in relapse prevention for the post-residential transition period. Preliminary findings support its feasibility, acceptability, and potential effectiveness, warranting larger-scale randomized controlled evaluation. This research contributes a novel, empirically-grounded model that systematically targets high-impact factors specific to this vulnerable population and transition period.
DOI: 10.25442/hku.29992498.v1
title: Supporting data for "Developing a Relapse Prevention Model and Intervention for Residential Substance Use Treatment"

description: <b>Background:</b> Relapse rates following residential substance use disorder (SUD) treatment remain high, with the transition from structured residential care to community living representing a period of extreme vulnerability. Existing relapse prevention models and interventions inadequately address the unique ecological discontinuities and empirically-validated risk and protective factors specific to this critical transitional phase.<b>Objectives:</b> This multi-phase sequential study aimed to develop and preliminarily evaluate a relapse prevention model and intervention, specifically designed for individuals preparing for discharge from residential SUD treatment.<b>Methods:</b> The research employed a five-phase design: (1) systematic meta-analysis quantifying risk and protective factors for post-residential relapse; (2) scoping review mapping current relapse prevention interventions in residential settings; (3) theoretical development of a relapse prevention model synthesizing empirical findings; (4) operationalization into a manualized 8-session intervention protocol; and (5) single-group pilot study evaluating feasibility, acceptability, and preliminary effectiveness in a Hong Kong residential treatment center.<b>Results:</b> The meta-analysis identified potent risk factors including heavy pre-treatment substance use (OR=11.27), treatment non-completion (OR=3.86), and substance-using social networks (OR=3.15), alongside protective factors including positive therapeutic alliance (OR=3.33), employment (OR=2.96), and aftercare engagement (OR=1.73). The scoping review revealed critical gaps in transition-focused interventions. The Transitional Relapse Intervention and Prevention (TRIP) model integrates four evidence-based components: Connection and Commitment, Core Skills for Relapse Prevention, Pro-Recovery Social and Environment, and Structured Transition Planning and Management. The pilot study demonstrated high feasibility and acceptability, with significant pre-post improvements in psychological distress, self-efficacy, and adaptive coping strategies. At six-month follow-up, 56.7% of participants maintained abstinence, with those remaining abstinent showing significantly greater increases in self-efficacy and reductions in substance-use coping during the intervention.<b>Conclusions:</b> The TRIP framework addresses critical theoretical and practical gaps in relapse prevention for the post-residential transition period. Preliminary findings support its feasibility, acceptability, and potential effectiveness, warranting larger-scale randomized controlled evaluation. This research contributes a novel, empirically-grounded model that systematically targets high-impact factors specific to this vulnerable population and transition period.
DOI: 10.15468/dl.r4weqc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Doronicum pardalianches",
 "Country is Iceland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009396-250914085247600/datasets/export for details.
DOI: 10.25442/hku.29996554
title: Supporting data for the thesis titled “Bridging the Past and Present: The Impact of the Isthmus of Panama on the Faunal Dynamics of Ostracoda”

description: In summary, the ostracod census data were used to investigate:1) The macroevolutionary impacts of ostracods associated with the Neogene formation of the Isthmus of Panama. 2) The trends in body size analysis associated with the Caribbean Extinction Event.3) The biogeography and community structure of ostracods across the modern-day Isthmus of Panama, namely the southwest Caribbean Sea and the Tropical Eastern Pacific.4) The ecology, taxonomy, and patterns of dispersal on two species of<i> Neomonoceratina </i>with Indo-Pacific origins.<br>The first dataset, titled "PPP samples", contains the census data for 171 ostracod species, derived from Neogene rock outcrop samples from the sedimentary basins of Panama and Costa Rica - these samples form a larger project titled the "Panama Palaeontology Project". The second dataset, titled "Panama surface samples", contains the census data for 233 ostracod species derived from surface sediment samples dredged from the southwestern Caribbean Sea and the Tropical Eastern Pacific. Both datasets form the basis of the assessed faunal dynamics of ostracods associated with the formation of the Isthmus of Panama.
DOI: 10.25442/hku.29996554.v1
title: Supporting data for the thesis titled “Bridging the Past and Present: The Impact of the Isthmus of Panama on the Faunal Dynamics of Ostracoda”

description: In summary, the ostracod census data were used to investigate:1) The macroevolutionary impacts of ostracods associated with the Neogene formation of the Isthmus of Panama. 2) The trends in body size analysis associated with the Caribbean Extinction Event.3) The biogeography and community structure of ostracods across the modern-day Isthmus of Panama, namely the southwest Caribbean Sea and the Tropical Eastern Pacific.4) The ecology, taxonomy, and patterns of dispersal on two species of<i> Neomonoceratina </i>with Indo-Pacific origins.<br>The first dataset, titled "PPP samples", contains the census data for 171 ostracod species, derived from Neogene rock outcrop samples from the sedimentary basins of Panama and Costa Rica - these samples form a larger project titled the "Panama Palaeontology Project". The second dataset, titled "Panama surface samples", contains the census data for 233 ostracod species derived from surface sediment samples dredged from the southwestern Caribbean Sea and the Tropical Eastern Pacific. Both datasets form the basis of the assessed faunal dynamics of ostracods associated with the formation of the Isthmus of Panama.
DOI: 10.25442/hku.30022761
title: Supporting data for "<b>Virus-induced Dysregulation and Pathological Change in the Respiratory Tracts of SARS-CoV-2-infected Hamsters</b>"

description: In this study, we utilized the Syrian golden hamster model, which is a well-established system for studying SARS-CoV-2 respiratory pathogenesis, to systematically evaluate the long-term pathological consequences of both primary infection and reinfection across respiratory tissues. Our multidisciplinary approach combines virological, histopathological, and immunological analyses to uncover the mechanisms of chronic disease development and to assess how reinfection shapes the post-acute healing response.
DOI: 10.25442/hku.30022761.v1
title: Supporting data for "<b>Virus-induced Dysregulation and Pathological Change in the Respiratory Tracts of SARS-CoV-2-infected Hamsters</b>"

description: In this study, we utilized the Syrian golden hamster model, which is a well-established system for studying SARS-CoV-2 respiratory pathogenesis, to systematically evaluate the long-term pathological consequences of both primary infection and reinfection across respiratory tissues. Our multidisciplinary approach combines virological, histopathological, and immunological analyses to uncover the mechanisms of chronic disease development and to assess how reinfection shapes the post-acute healing response.
DOI: 10.15468/dl.f5u9md
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Doronicum pardalianches",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009395-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25442/hku.29999620
title: <i>Supporting data for "Novel Cysteine Chemistry for Protein Functionalization and Conjugation"</i>

description: The entitled thesis describes the development of a novel cysteine chemistry for protein conjugation. A new compound was developed for cysteine conjugation with favorable kinetics, selectivity and compatibility in aqueous conditions. The described conjugation chemistry was applied into generating functional peptide, protein and antibody conjugates.The dataset contains all the raw images for gel and confocal microscopy experiments, raw data for LCMS and intact protein MS experiments, biological assays and NMR spectra described in the entitled thesis.
DOI: 10.25442/hku.29999620.v1
title: <i>Supporting data for "Novel Cysteine Chemistry for Protein Functionalization and Conjugation"</i>

description: The entitled thesis describes the development of a novel cysteine chemistry for protein conjugation. A new compound was developed for cysteine conjugation with favorable kinetics, selectivity and compatibility in aqueous conditions. The described conjugation chemistry was applied into generating functional peptide, protein and antibody conjugates.The dataset contains all the raw images for gel and confocal microscopy experiments, raw data for LCMS and intact protein MS experiments, biological assays and NMR spectra described in the entitled thesis.
DOI: 10.25442/hku.30022462
title: Supporting data for “Stimuli-responsive peptide amphiphile nanoparticles for ferroptosis therapy”

description: Stimuli-responsive peptide amphiphile nanoparticles for codelivery of ferroptosis inducers was designed and synthesised and characterised. The efficacy of the particles were tested on HCC cell lines and characteristics of ferroptotic cell death was observed. The effect of the nanoparticles was further examined in animal models to evalute the particle distribution and anti-tumor effect.This dataset contains all chemical characterisation data, all particle characterisation data, all cell based assays to validate ferroptotic cell death, cell viability and in vivo experiment data.
DOI: 10.25442/hku.30022462.v1
title: Supporting data for “Stimuli-responsive peptide amphiphile nanoparticles for ferroptosis therapy”

description: Stimuli-responsive peptide amphiphile nanoparticles for codelivery of ferroptosis inducers was designed and synthesised and characterised. The efficacy of the particles were tested on HCC cell lines and characteristics of ferroptotic cell death was observed. The effect of the nanoparticles was further examined in animal models to evalute the particle distribution and anti-tumor effect.This dataset contains all chemical characterisation data, all particle characterisation data, all cell based assays to validate ferroptotic cell death, cell viability and in vivo experiment data.
DOI: 10.25442/hku.30018271
title: Supporting data for “Discovery of a Covalent Ligand of Pyruvate Kinase M2 for Treating Hepatocellular Carcinoma”

description: The research is about developing a covalent drug target pyruvate kinase M2 to treat hepatocellular carcinoma. Activating PKM2 by promoting tetramer formation were found to be anti-tumour. We have identified 2J1, a cysteine targeting compound, was able to bind and activate PKM2. We have used gel-based ABPP, pyruvate kinase activity assay, RNA-seq, cellular fractionation, flow cytometry for cell cycle analysis, confocal imaging for ROS measurement, metabolomics, and mouse experiment to investigate 2J1 effects in PKM2 and HCC cells. This data set contains western images for cellular fractionation, cell cycle marker and Flag-pull down. It also includes rhodamine gel images for ABPP, and omics data such as proteomics, metabolomics and transcriptomic. It contains data analysis for in vivo mouse experiment as well.
DOI: 10.25442/hku.30018271.v1
title: Supporting data for “Discovery of a Covalent Ligand of Pyruvate Kinase M2 for Treating Hepatocellular Carcinoma”

description: The research is about developing a covalent drug target pyruvate kinase M2 to treat hepatocellular carcinoma. Activating PKM2 by promoting tetramer formation were found to be anti-tumour. We have identified 2J1, a cysteine targeting compound, was able to bind and activate PKM2. We have used gel-based ABPP, pyruvate kinase activity assay, RNA-seq, cellular fractionation, flow cytometry for cell cycle analysis, confocal imaging for ROS measurement, metabolomics, and mouse experiment to investigate 2J1 effects in PKM2 and HCC cells. This data set contains western images for cellular fractionation, cell cycle marker and Flag-pull down. It also includes rhodamine gel images for ABPP, and omics data such as proteomics, metabolomics and transcriptomic. It contains data analysis for in vivo mouse experiment as well.
DOI: 10.15468/dl.tgavzf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mytella brasiliensis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009397-250914085247600/datasets/export for details.
DOI: 10.15468/dl.rt4p7j
title: Occurrence Download

description: A dataset containing 26075 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'MW'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence."year" &gt;= 2001 AND occurrence."year" &lt;= 2025)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 26075 records were derived from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009367-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17139220
title: FIShBOT Archive 2025-09-17

description: This dataset is a static snapshot of the FIShBOT data product before new data are aggregated. This version of fishbot is archived for reproducibility and is not updated. The data are aggregated from the FIShBOT system, which collects and processes oceanographic from fishery dependent and independent sources.
DOI: 10.5281/zenodo.17139221
title: FIShBOT Archive 2025-09-17

description: This dataset is a static snapshot of the FIShBOT data product before new data are aggregated. This version of fishbot is archived for reproducibility and is not updated. The data are aggregated from the FIShBOT system, which collects and processes oceanographic from fishery dependent and independent sources.
DOI: 10.25442/hku.30017380
title: Supported data for "Investigating the Pathological Mechanisms for the Spread of α-Synuclein in Experimental Parkinson’s Disease"

description: Parkinson’s disease (PD) is the second most common neurodegenerative disease worldwide. Loss of dopaminergic neurons in the substantia nigra pars compacta (SNpc) and Lewy bodies in neurons are two major pathological hallmarks of the PD. The spread of a-synuclein to other brain regions has been speculated to induce neuronal death and loss of some brain functions. However, it is still a major question in PD research field. While free radicals play an important role in the pathogenesis of PD, it is unclear whether this factor also makes impact on the spreading of a-synuclein to other brain regions. This study aims to investigate whether free radicals affect the spread of a-synuclein in experimental models of PD. This data set includes data presented in the result chapters.