cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4753711
title: Data and analysis code for Close et al. (2017) "Controlling for the species-area effect supports constrained long-term Mesozoic terrestrial vertebrate diversification"

description: Data (Paleobiology Database occurrence data downloads) plus R analysis scripts for Close et al. (2017) "Controlling for the species-area effect supports constrained long-term Mesozoic terrestrial vertebrate diversification", Nature Communications.<br>Shapefiles for Scotese paleomaps not included due to copyright reasons.
DOI: 10.6084/m9.figshare.4753699
title: A modeling study of functional magnetic resonance imaging to individualize target definition of seminal vesicles for external beam radiotherapy

description: <b>Background:</b> Pre-treatment magnetic resonance imaging (MRI) can give patient-specific evaluation of suspected pathologically involved volumes in the seminal vesicles (SV) in prostate cancer patients. By targeting this suspicious volume we hypothesize that radiotherapy is more efficient without introducing more toxicity. In this study we evaluate the concept of using MRI-defined target volumes in terms of tumor control probability (TCP) and rectal normal tissue complication probability (NTCP). <b>Material and methods:</b> Twenty-one high-risk prostate cancer patients were included. Pre-treatment CT images, T2 weighted (T2w) MRI and two multi-parametric MRI were acquired. Overlap between a suspicious volume in the SV observed on T2w images and a suspicious volume observed on either multi-parametric MRI was assumed to reflect a true malignant region (named ‘MRI positive’). In addition the entire SV on the CT-scan was delineated. Three treatment plans of 2 Gy ×39 fractions were generated per patient: one covering the MRI positive volume in SV and prostate with margin of 11 mm to the MRI positive in the SV and two plans covering prostate and SV using 11 and 7 mm SV margin, respectively. All plans were prescribed the same PTV mean dose. Rectal NTCP grade ≥2 was evaluated with the Lyman–Kutcher–Burman model and TCP was estimated by a logistic model using the combined MRI positive volume in SV and prostate as region-of-interest. <b>Results:</b> Fourteen of twenty-one patients were classified as MRI positive, six of which had suspicious volumes in all three MRI modalities. On average TCP for the plan covering prostate and the MRI positive volume was 3% higher (up to 11%) than the two other plans which was statistically significant. The increased TCP was obtained without increasing rectal NTCP grade ≥2. <b>Conclusions:</b> Using functional MRI for individualized target delineation in the SV may improve the treatment outcome in radiotherapy of prostate cancer without increasing the rectal toxicity.
DOI: 10.6084/m9.figshare.4753711.v1
title: Data and analysis code for Close et al. (2017) "Controlling for the species-area effect supports constrained long-term Mesozoic terrestrial vertebrate diversification"

description: Data (Paleobiology Database occurrence data downloads) plus R analysis scripts for Close et al. (2017) "Controlling for the species-area effect supports constrained long-term Mesozoic terrestrial vertebrate diversification", Nature Communications.<br>Shapefiles for Scotese paleomaps not included due to copyright reasons.
DOI: 10.7910/dvn/pkjufn/eba6pi
title: FCC2001.340.ran

description: :unav
DOI: 10.6084/m9.figshare.4753708.v1
title: Zym_tritici_RRes_v4.0_RK_public.gff

description: Annotation of Zymoseptoria tritici merging JGI and custom annotations at Rothamsted.
DOI: 10.6084/m9.figshare.4753684
title: Amino acid transporter gene containing scaffolds (fasta) from reassembled IWGSC CSS reads using SOAPdenovo2

description: Re-assembled scaffolds from different Chinese Spring references to assist in custom assembly of amino acid transporter scaffolds in Triticum aestivum.
DOI: 10.6084/m9.figshare.4753687
title: Amino acid transporter gene containing scaffolds (fasta) after manual curation

description: Custom assembled Triticum aestivum genomic scaffolds of Amino acid transporters for Chinese Spring.
DOI: 10.6084/m9.figshare.4753699.v1
title: A modeling study of functional magnetic resonance imaging to individualize target definition of seminal vesicles for external beam radiotherapy

description: <b>Background:</b> Pre-treatment magnetic resonance imaging (MRI) can give patient-specific evaluation of suspected pathologically involved volumes in the seminal vesicles (SV) in prostate cancer patients. By targeting this suspicious volume we hypothesize that radiotherapy is more efficient without introducing more toxicity. In this study we evaluate the concept of using MRI-defined target volumes in terms of tumor control probability (TCP) and rectal normal tissue complication probability (NTCP). <b>Material and methods:</b> Twenty-one high-risk prostate cancer patients were included. Pre-treatment CT images, T2 weighted (T2w) MRI and two multi-parametric MRI were acquired. Overlap between a suspicious volume in the SV observed on T2w images and a suspicious volume observed on either multi-parametric MRI was assumed to reflect a true malignant region (named ‘MRI positive’). In addition the entire SV on the CT-scan was delineated. Three treatment plans of 2 Gy ×39 fractions were generated per patient: one covering the MRI positive volume in SV and prostate with margin of 11 mm to the MRI positive in the SV and two plans covering prostate and SV using 11 and 7 mm SV margin, respectively. All plans were prescribed the same PTV mean dose. Rectal NTCP grade ≥2 was evaluated with the Lyman–Kutcher–Burman model and TCP was estimated by a logistic model using the combined MRI positive volume in SV and prostate as region-of-interest. <b>Results:</b> Fourteen of twenty-one patients were classified as MRI positive, six of which had suspicious volumes in all three MRI modalities. On average TCP for the plan covering prostate and the MRI positive volume was 3% higher (up to 11%) than the two other plans which was statistically significant. The increased TCP was obtained without increasing rectal NTCP grade ≥2. <b>Conclusions:</b> Using functional MRI for individualized target delineation in the SV may improve the treatment outcome in radiotherapy of prostate cancer without increasing the rectal toxicity.
DOI: 10.7910/dvn/pkjufn/aw6tug
title: FCC2001.153.ran

description: :unav
DOI: 10.6084/m9.figshare.4753678
title: Gene annotation of assembled amino acid transporter scaffolds for Triticum aestivum Chinese Spring (GFF3)

description: Amino acid CDS annotations for custom assembled genomic scaffolds.
DOI: 10.6084/m9.figshare.4753681
title: Amino acid transporter transcripts (fasta) after manual curation

description: Transcripts from custom genomic scaffolds and annotation of amino acid transporters in Chinese Spring Triticum aestivum.
DOI: 10.6084/m9.figshare.4753687.v1
title: Assembled_Amino_acid_triticum_aestivum_CS_scaffolds.fasta

description: Custom assembled Triticum aestivum genomic scaffolds of Amino acid transporters for Chinese Spring.
DOI: 10.7910/dvn/pkjufn/90ptm4
title: FCC2003.033.ran

description: :unav
DOI: 10.6084/m9.figshare.4753675
title: A dataset that rewards people for visual data exploration

description: Visual data exploration is a key step in any data analysis, but often ignored by practitioners who want to jump fast into model output.<br><br>This dataset, intended mostly to be used in statistics lectures and training sessions, provides a small but unexpected reward to people who actually plot it.<br><br>Made with http://robertgrantstats.co.uk/drawmydata.html. Thanks to Robert Grant for the app.<br>
DOI: 10.6084/m9.figshare.4753678.v1
title: Assembled_Amino_acid_triticum_aestivum_CS_scaffolds.gff

description: Amino acid CDS annotations for custom assembled genomic scaffolds.
DOI: 10.6084/m9.figshare.4753681.v1
title: Assembled_Amino_acid_triticum_aestivum_CS_transcripts.fasta

description: Transcripts from custom genomic scaffolds and annotation of amino acid transporters in Chinese Spring Triticum aestivum.
DOI: 10.6084/m9.figshare.4753684.v1
title: Reassembled_Triticum_asetivum_scaffolds_using_raw_reads.fasta

description: Re-assembled scaffolds from different Chinese Spring references to assist in custom assembly of amino acid transporter scaffolds in Triticum aestivum.
DOI: 10.7910/dvn/pkjufn/nw164t
title: FCC2002.268.ran

description: :unav
DOI: 10.6084/m9.figshare.4753675.v1
title: A dataset that rewards people for visual data exploration

description: Visual data exploration is a key step in any data analysis, but often ignored by practitioners who want to jump fast into model output.<br><br>This dataset, intended mostly to be used in statistics lectures and training sessions, provides a small but unexpected reward to people who actually plot it.<br><br>Made with http://robertgrantstats.co.uk/drawmydata.html. Thanks to Robert Grant for the app.<br>
DOI: 10.7910/dvn/pkjufn/96bxhj
title: FCC2001.221.ran

description: :unav
DOI: 10.6084/m9.figshare.4753633
title: Camera trap locations

description: Attributes of camera trap locations used in Williams, S.T., Maree, N., Taylor, P., Belmain, S.R., Keith, M. and Swanepoel, L.H. (in review) Predation by small mammalian carnivores in rural agro-ecosystems: An undervalued ecosystem service? Ecosystem Services.
DOI: 10.6084/m9.figshare.4753633.v1
title: Camera trap locations

description: Attributes of camera trap locations used in Williams, S.T., Maree, N., Taylor, P., Belmain, S.R., Keith, M. and Swanepoel, L.H. (in review) Predation by small mammalian carnivores in rural agro-ecosystems: An undervalued ecosystem service? Ecosystem Services.
DOI: 10.6084/m9.figshare.4753621
title: Pelvis reconstruction steps

description: Left top to bottom: original sacrum, area selected for deletion (blue), resulting mirror imaged sacrum. right top to bottom: placement of planes projecting from the sacrum to assist alignment of os coxa, resulting reconstruction in line with projection planes.
DOI: 10.6084/m9.figshare.4753630
title: Priority areas for biodiversity conservation in mainland Ecuador

description: Ecuador’s territory harbors a unique set of species and ecosystems, many of them endemic to the countries’ territory and subject to different sources of threat of anthropogenic origin. Despite national and subnational conservation strategies developed in Ecuador to conserve its biodiversity in the long run, including the National System of Protected Areas (PANE) and the forest conservation incentive program SocioBosque (PSB), further actions are needed to mitigate and reverse the effects of threats for the persistence of biodiversity. This study was designed to identify the most important areas for biodiversity conservation in mainland Ecuador that can contribute to preserving key species (i.e. endemic, threatened) and ecosystems in the wider landscape, thus complementing current conservation efforts (i.e. PANE). Species distribution models and recent maps were used to identify a set of 744 species and 87 ecosystems as surrogates of the country’s biodiversity. Marxan, a systematic reserve selection algorithm was used to identify important biodiversity areas that could represent between 10% and 20% of the remnant distribution of the surrogates. The optimized solution generated by Marxan included 24% (3.64 million ha) of Ecuador′s remnant vegetation, of which 35% is within the current national protected area system and 13% (456 000 ha) are included within SocioBosque communal and private conservation agreements. Major conservation shortfalls of the PANE were concentrated in the Southern Andes, Central Amazonia, and the Central and Southern portions of the Coastal plain. The incidence of complementary criteria to prioritize conservation strategies, related to climate change, ecosystem conversion, carbon and accessibility, and population density change in relation to the important biodiversity areas was heterogeneous among regions. This confirms the need to implement differentiated conservation and sustainable landscape management strategies. Fourteen priority landscapes were identified based on these important biodiversity areas, including remnant ecosystems considered critical for maintaining large-scale connectivity among regions and preservation of restricted range and threatened species. Further work is needed to expand base information about distribution patterns of biodiversity, improve the representation of endemic and threatened species in conservation strategies, and to fully integrate conservation priorities among a wider set of goals in land use planning exercises at different scales.
DOI: 10.5519/qd.mvps9xb8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.21227/6am2-cg92
title: iNoise Indian Noise Database

description: Speech Processing in noisy condition allows researcher to build solutions that work in real world conditions. Environmental noise in Indian conditions are very different from typical noise seen in most western countries. This dataset is a collection of various noises, both indoor and outdoor ollected over a period of several months. The audio files are of the format RIFF (little-endian) data, WAVE audio, Microsoft PCM, 8 bit, mono 11025 Hz and have been recorded using the Dialogic CTI card. While the speech noise data was collected 40-50 seconds at a time, we have concatenated them to present a single noise file per category. Type of noises [a] Outdoor (Autorickshaw, Bus, Highway, Railway Station, Street) and [b] Indoor (Airport, Cafteria, Home, Train, Workplace)
DOI: 10.21227/cy41-zt25
title: GEO WEB BASED FACILITY MAPPING FOR VISAKHAPATNAM ZONE-2

description: The project is conceptualized to 'Geo Web-Based Facility Mapping for Zone-2 in Greater Visakhapatnam Municipal Corporation- GVMC in Visakhapatnam, India'. The main objective is to share the spatial data to the public to help them find the information about the nearest Hospital, ATM, Educational institutions, petrol filling stations, and supermarkets by providing both web map services and web coverage services using QGIS Cloud.
DOI: 10.21227/w3xm-jn45
title: iNoise Indian Noise Database

description: Speech Processing in noisy condition allows researcher to build solutions that work in real world conditions. Environmental noise in Indian conditions are very different from typical noise seen in most western countries. This dataset is a collection of various noises, both indoor and outdoor ollected over a period of several months. The audio files are of the format RIFF (little-endian) data, WAVE audio, Microsoft PCM, 8 bit, mono 11025 Hz and have been recorded using the Dialogic CTI card. While the speech noise data was collected 40-50 seconds at a time, we have concatenated them to present a single noise file per category. Type of noises [a] Outdoor (Autorickshaw, Bus, Highway, Railway Station, Street) and [b] Indoor (Airport, Cafteria, Home, Train, Workplace)
DOI: 10.21227/x5mv-3k35
title: GEO WEB BASED FACILITY MAPPING FOR VISAKHAPATNAM ZONE-2

description: The project is conceptualized to 'Geo Web-Based Facility Mapping for Zone-2 in Greater Visakhapatnam Municipal Corporation- GVMC in Visakhapatnam, India'. The main objective is to share the spatial data to the public to help them find the information about the nearest Hospital, ATM, Educational institutions, petrol filling stations, and supermarkets by providing both web map services and web coverage services using QGIS Cloud.
DOI: 10.5281/zenodo.3740837
title: Wikidata Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.3740838
title: Wikidata Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.15468/nbaued
title: New species of subterranean and endogean terrestrial isopods (Crustacea, Oniscidea) from Tuscany (central Italy)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Taiti, Stefano, Montesanto, Giuseppe (2018): New species of subterranean and endogean terrestrial isopods (Crustacea, Oniscidea) from Tuscany (central Italy). Zoosystema 40 (11): 197-226, DOI: 10.5252/zoosystema2018v40a11
DOI: 10.21227/1x9b-x837
title: GEO WEB BASED FACILITY MAPPING FOR VISAKHAPATNAM ZONE-2

description: The project is conceptualized to 'Geo Web-Based Facility Mapping for Zone-2 in Greater Visakhapatnam Municipal Corporation- GVMC in Visakhapatnam, India'. The main objective is to share the spatial data to the public to help them find the information about the nearest Hospital, ATM, Educational institutions, petrol filling stations, and supermarkets by providing both web map services and web coverage services using QGIS Cloud.
DOI: 10.5519/qd.gyc7v8w5
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (121 records)
DOI: 10.21227/ngpv-xz81
title: Test

description: Delete
DOI: 10.5281/zenodo.3741411
title: Monolithic piezoelectric control of soliton microcombs

description: Available data for "Monolithic piezoelectric control of soliton microcombs" This version (V2) is an updated version with more data, based on the previous version V1: 10.5281/zenodo.3731488
DOI: 10.15468/o4ujte
title: Revision of fossil Bibionidae (Insecta: Diptera) from the Miocene of Radoboj, Croatia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Skartveit, John, Krizmanić, Katarina (2020): Revision of fossil Bibionidae (Insecta: Diptera) from the Miocene of Radoboj, Croatia. Zootaxa 4759 (3): 351-378, DOI: https://doi.org/10.11646/zootaxa.4759.3.3
DOI: 10.5281/zenodo.3741416
title: Notified bodies, horizontal specifications and harmonised standards for construction materials third party assessment according to the CPR - EU 305/2011

description: This dataset was extracted from NANDO, the website of the European Commission for notified bodies. It contains the list of notified bodies, horizontal specifications and harmonised standards for construction materials third party assessment according to the CPR - EU 305/2011
DOI: 10.5281/zenodo.3741417
title: Notified bodies, horizontal specifications and harmonised standards for construction materials third party assessment according to the CPR - EU 305/2011

description: This dataset was extracted from NANDO, the website of the European Commission for notified bodies. It contains the list of notified bodies, horizontal specifications and harmonised standards for construction materials third party assessment according to the CPR - EU 305/2011
DOI: 10.5281/zenodo.3741410
title: Data package for opportunistic constant target matchup study

description: Opportunistic constant target matching is a new method for satellite<br> intercalibration. It is complementary to the traditional simultaneous nadir overpass<br> (SNO) method because it can provide warm matchups in cases where the<br> SNO method provides only cold matchups. A geostationary infrared sensor (SEVIRI) is used to select constant<br> target matches for two different microwave sensors (NOAA 18 and Metop<br> A). This is the data package for a publication where we discuss the<br> main assumptions and limitations of the new method and explore its<br> statistical properties with a simple Monte Carlo simulation and with<br> real observations from NOAA 18 and Metop A.
description: This is a minor update to the initial version. The only difference is that the python plotting script contains cosmetic improvements that were requested by one of the article reviewers.
DOI: 10.7910/dvn/4wk146/dwz5vn
title: edu_schools_primary_LAT.tab

description: Tabular data (tab delimited) with metadata before the header (first 6 lines identified with #). Source and notes columns included beside data columns.
DOI: 10.21227/p2kr-3148
title: iNoise Indian Noise Database

description: Speech Processing in noisy condition allows researcher to build solutions that work in real world conditions. Environmental noise in Indian conditions are very different from typical noise seen in most western countries. This dataset is a collection of various noises, both indoor and outdoor ollected over a period of several months. The audio files are of the format RIFF (little-endian) data, WAVE audio, Microsoft PCM, 8 bit, mono 11025 Hz and have been recorded using the Dialogic CTI card. While the speech noise data was collected 40-50 seconds at a time, we have concatenated them to present a single noise file per category. Type of noises [a] Outdoor (Autorickshaw, Bus, Highway, Railway Station, Street) and [b] Indoor (Airport, Cafteria, Home, Train, Workplace)
DOI: 10.5281/zenodo.3741719
title: Supplement of manuscript "microorganisms-746193"

description: This folder contains analysis data from the study submitted as manuscript (Manuscript ID microorganisms-746193): TITLE: Functional genomics differentiate inherent and environmentally influenced traits in dinoflagellate and diatom communities AUTHORS: Stephanie Elferink, Stephanie.westphal@awi.de, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research<sup> </sup> Uwe John, Uwe.John@awi.de, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, and Helmholtz Institute for Functional Marine Biodiversity Stefan Neuhaus, Stephan.neuhaus@awi.de, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research<sup> </sup> Sylke Wohlrab, Sylke.wohlrab@awi.de, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, and Helmholtz Institute for Functional Marine Biodiversity JOURNAL: MDPI - microorganisms MS-ID: microorganisms-746193 HOWTO: Sequences identified as Alveloates or Stramenopiles (description in manuscript) had been were classified more accurately by PhyloAssigner version 6.166 (https://github.com/jungbluth/phyloassigner, Vergin et al., 2013, DOI:10.1038/ismej.2013.32) with a phylogenetic placement onto reference trees based on 18S/28S concatenated alignments, according to Elferink et al. 2017 (DOI: 10.1016/j.dsr.2016.11.002). CONTENT: reference databases: - Alveolata_SSU-LSU-concat_310715_636.phyloassignerdb - Stramenopiles_SSU_LSU_concat_030815_1777.phyloassignerdb query sequence files: - Alveolata_seqtab_SIGN_dada2.fasta - Alveolata_seqtab_SIGN_dada2.fasta created output folder including the taxonomic annotation: - Alveolata_seqtab_SIGN_dada2.place.out - Stramenopiles_seqtab_SIGN_dada2.place.out text file containing the used commands: - commands