cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.mqccsw
title: Occurrence Download

description: A dataset listing the 8 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phallus indusiatus Vent."
 ]
}

 The dataset's 8 records were derived from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0379742-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.72pgc7
title: Occurrence Download

description: A dataset containing 1257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-2.70264 34.74161,8.83301 36.24427,8.83301 38.34166,-0.98877 39.90974,-2.65869 39.19821,-2.70264 34.74161))",
 "TaxonKey is Aedes albopictus (Skuse, 1894)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1257 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001645-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wp54t9
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.3_1",
 "Geometry POLYGON((-137.49081 21.30761,-91.50919 21.30761,-91.50919 39.69239,-137.49081 39.69239,-137.49081 21.30761))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Asclepias albicans S.Watson"
 ]
}

 The dataset includes 117 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032096-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-56494
title: Redemption tidings, vol. 37, nos. 1-52, 1 Jan. - 22 Dec. 1961

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.u8chyu
title: Occurrence Download

description: A dataset containing 12521 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stachys byzantina K.Koch",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12521 records from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259119-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.789hrz
title: Occurrence Download

description: A dataset containing 14060 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "TaxonKey is Woodsia ilvensis (L.) R.Br.",
 "Year 1970-2023"
 ]
}

 The dataset includes 14060 records from 216 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080880-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjg6vj
title: Occurrence Download

description: A dataset containing 2158 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canis lupus baileyi Nelson & Goldman, 1929"
 ]
}

 The dataset includes 2158 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010019-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.emkdeg
title: Occurrence Download

description: A dataset containing 42682 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "StateProvince is one of (Boyacá, Antioquia, Córdoba)",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 42682 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065791-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qc9dfb
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Toxotrypana curvicauda Gerstaecker, 1860"
 ]
}

 The dataset includes 144 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252181-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24448401
title: Genome-wide identification and characterisation of <i>Aquaporin</i>s in <i>Rosa chinensis</i>

description: Aquaporins (AQPs) are small integral membrane proteins that facilitate the efficient transport of small solutes like water, metalloids, urea, and CO2 across the membrane. Plant aquaporins are known to be involved in vital physiological processes like seed germination, stomatal movement, cell elongation, and reproductive growth. In the present study, 36 AQPs were identified through genome-wide computational analysis performed in the rose genome. Subsequent phylogenetic analysis classified the AQPs into five subfamilies, including 10 Plasma membrane intrinsic proteins (PIPs), 8 Tonoplast intrinsic proteins (TIPs), 9 Nodulin intrinsic proteins (NIPs), 3 Small intrinsic proteins (SIPs), and 6 uncharacterised intrinsic proteins (XIPs). Based on the prediction of silicon solute specificity, one of the NIPs is predicted to be a silicon transporter. Structural analysis revealed the characteristic six trans-membrane domains and two-half alpha helix harbouring two conserved NPA motifs in the majority of the predicted AQPs. The protein tertiary structures predicted with homology-based modelling were used to study the pore lining remains and to predict the solute transport activity of the AQPs. Expression profiling of the rose AQPs showed tissue-specific expression of many members. The data provided here will help in understanding the AQP-based solute transport system in roses and other related species.
DOI: 10.15468/dl.cvyxro
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tuber"
 ]
}

 The dataset includes 31 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010019-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9xsvz
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Durio graveolens Becc.)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1943",
 "Year is less than or equal to 2023",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 61 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065824-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24448401.v1
title: Genome-wide identification and characterisation of <i>Aquaporin</i>s in <i>Rosa chinensis</i>

description: Aquaporins (AQPs) are small integral membrane proteins that facilitate the efficient transport of small solutes like water, metalloids, urea, and CO2 across the membrane. Plant aquaporins are known to be involved in vital physiological processes like seed germination, stomatal movement, cell elongation, and reproductive growth. In the present study, 36 AQPs were identified through genome-wide computational analysis performed in the rose genome. Subsequent phylogenetic analysis classified the AQPs into five subfamilies, including 10 Plasma membrane intrinsic proteins (PIPs), 8 Tonoplast intrinsic proteins (TIPs), 9 Nodulin intrinsic proteins (NIPs), 3 Small intrinsic proteins (SIPs), and 6 uncharacterised intrinsic proteins (XIPs). Based on the prediction of silicon solute specificity, one of the NIPs is predicted to be a silicon transporter. Structural analysis revealed the characteristic six trans-membrane domains and two-half alpha helix harbouring two conserved NPA motifs in the majority of the predicted AQPs. The protein tertiary structures predicted with homology-based modelling were used to study the pore lining remains and to predict the solute transport activity of the AQPs. Expression profiling of the rose AQPs showed tissue-specific expression of many members. The data provided here will help in understanding the AQP-based solute transport system in roses and other related species.
DOI: 10.15468/dl.d6j9hb
title: Occurrence Download

description: A dataset containing 9040 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dugong dugon (Müller, 1776)"
 ]
}

 The dataset includes 9040 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279614-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24278219
title: Analysis of genetic diversity of yuzu (<i>Citrus junos</i> Sieb. Ex Tanaka) using single nucleotide polymorphisms identified through RNA-seq and whole-genome resequencing analyses

description: Yuzu (<i>Citrus junos</i> Sieb. Ex Tanaka) is widely cultivated in Asia. However, a system for variety identification has not been developed yet. RNA-seq analysis was performed to identify variants among five yuzu samples including a seedless variety. However, only four variants were found, suggesting that the seedless trait might originate from bud mutations. To identify more variants, whole-genome resequencing was performed. A total of 140 reliable variants were screened. Based on these variants, 30 high-resolution melting (HRM) markers were developed. After genotyping 265 yuzu samples using the HRM markers, the yuzu samples were classified into 18 types. Three yuzu-like samples (B-37-1, B-UK2, and B-MD6-8) showing different fruit morphologies and off-type HRM peak patterns were assumed to originate from interspecific hybridisation. To identify the parent species of these yuzu-like samples, nucleotide sequences of a hypervariable chloroplast genomic region and a nuclear <i>CitRWP</i> gene responsible for nucellar embryony were obtained. Chloroplast genome sequence analysis indicated that the maternal parents of B-37-1 and B-MD6-8 were yuzu, whereas the B-UK2 sequence was identical to that of sweet orange. Moreover, the <i>CitRWP</i> sequences indicated that the male parents of B-37-1, B-UK2, and B-MD6-8 were mandarin, yuzu, and pummelo, respectively.
DOI: 10.6084/m9.figshare.24278219.v1
title: Analysis of genetic diversity of yuzu (<i>Citrus junos</i> Sieb. Ex Tanaka) using single nucleotide polymorphisms identified through RNA-seq and whole-genome resequencing analyses

description: Yuzu (<i>Citrus junos</i> Sieb. Ex Tanaka) is widely cultivated in Asia. However, a system for variety identification has not been developed yet. RNA-seq analysis was performed to identify variants among five yuzu samples including a seedless variety. However, only four variants were found, suggesting that the seedless trait might originate from bud mutations. To identify more variants, whole-genome resequencing was performed. A total of 140 reliable variants were screened. Based on these variants, 30 high-resolution melting (HRM) markers were developed. After genotyping 265 yuzu samples using the HRM markers, the yuzu samples were classified into 18 types. Three yuzu-like samples (B-37-1, B-UK2, and B-MD6-8) showing different fruit morphologies and off-type HRM peak patterns were assumed to originate from interspecific hybridisation. To identify the parent species of these yuzu-like samples, nucleotide sequences of a hypervariable chloroplast genomic region and a nuclear <i>CitRWP</i> gene responsible for nucellar embryony were obtained. Chloroplast genome sequence analysis indicated that the maternal parents of B-37-1 and B-MD6-8 were yuzu, whereas the B-UK2 sequence was identical to that of sweet orange. Moreover, the <i>CitRWP</i> sequences indicated that the male parents of B-37-1, B-UK2, and B-MD6-8 were mandarin, yuzu, and pummelo, respectively.
DOI: 10.15468/dl.7pd7ir
title: Occurrence Download

description: A dataset containing 372 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 3) Abundance of planktonic foraminifera in ODP Hole 113-690C, large size fraction"
 ]
}

 The dataset includes 372 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010020-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24503814
title: Genome survey and identification of key genes associated with freezing tolerance in genomic draft of hexaploid wild <i>Camellia oleifera</i>

description: <i>Camellia oleifera</i> Abel. is the dominant woody oil crop under significant development in China. Wild <i>C. oleifera</i> in Lu Mountain is a valuable genetic resource with strong freezing tolerance. With high-throughput sequencing, the genome of wild <i>C. oleifera</i> in Lu Mountain was analysed and 700.3 Gb clean reads were obtained. The genome of wild <i>C. oleifera</i> was estimated as allohexaploid, and its haplotype genome size was about 2.69 Gb-2.79 Gb, with repeat content of 63.01%-73.02% and heterozygosity of 6.30%-7.43%, belonging to a very complex genome. The genomic draft was assembled that contained a total of 6,952,303 scaffolds with N50 length of 1.23 kb, and the overall length was 2.39 Gb with GC content of 40.87%. In the genomic draft, 1,104,618 SSRs were identified; <i>scaffold1096012</i> and <i>scaffold1779458</i> were identified as key genes associated with freezing tolerance combined with the transcriptome data of field plus lab experiments. In this study, the genomic background of hexaploid wild <i>C. oleifera</i> in Lu Mountain was revealed. This lays the foundation for obtaining the high-quality chromosome-level reference genome of wild <i>C. oleifera</i>. The identification of SSRs and key genes associated with freezing tolerance may contribute to the efficient exploration and utilisation of this genetic resource.
DOI: 10.6084/m9.figshare.24503814.v1
title: Genome survey and identification of key genes associated with freezing tolerance in genomic draft of hexaploid wild <i>Camellia oleifera</i>

description: <i>Camellia oleifera</i> Abel. is the dominant woody oil crop under significant development in China. Wild <i>C. oleifera</i> in Lu Mountain is a valuable genetic resource with strong freezing tolerance. With high-throughput sequencing, the genome of wild <i>C. oleifera</i> in Lu Mountain was analysed and 700.3 Gb clean reads were obtained. The genome of wild <i>C. oleifera</i> was estimated as allohexaploid, and its haplotype genome size was about 2.69 Gb-2.79 Gb, with repeat content of 63.01%-73.02% and heterozygosity of 6.30%-7.43%, belonging to a very complex genome. The genomic draft was assembled that contained a total of 6,952,303 scaffolds with N50 length of 1.23 kb, and the overall length was 2.39 Gb with GC content of 40.87%. In the genomic draft, 1,104,618 SSRs were identified; <i>scaffold1096012</i> and <i>scaffold1779458</i> were identified as key genes associated with freezing tolerance combined with the transcriptome data of field plus lab experiments. In this study, the genomic background of hexaploid wild <i>C. oleifera</i> in Lu Mountain was revealed. This lays the foundation for obtaining the high-quality chromosome-level reference genome of wild <i>C. oleifera</i>. The identification of SSRs and key genes associated with freezing tolerance may contribute to the efficient exploration and utilisation of this genetic resource.
DOI: 10.6084/m9.figshare.24610119
title: Transcriptomics-based identification of transcription factors in the halophyte <i>Apocynum venetum</i> L.

description: The medicinal halophyte plant <i>Apocynum venetum</i> L. can tolerate high salt levels in the soil, which significantly affects its growth and development. To study the molecular mechanisms underlying its environmental adaptations, omics tools were employed. <i>Apocynum venetum</i> L. plants were subjected to varying levels of salt stress. The corresponding RNA of Apocyni Veneti Folium (AVF), the leaf of <i>Apocynum venetum</i> L., was sequenced using a <i>de novo</i> approach. Functional annotation and expression analysis were utilised to identify differentially expressed transcription factors (TFs). The classification of these TFs was further divided into different families, including AP2/ERF, bHLH, WRKY, and HSF. Under conditions of modest saline stress, the majority of TF genes exhibited a predilection for up-regulation, particularly <i>bHLHs</i>, which were discovered to be consistent with the build-up of flavonoid glycosides. In conjunction with previous proteomics and metabolomics findings, we have discovered that the gene bHLH35 is a potential candidate. This gene has shown changes at both the transcript and protein levels, indicating that it may play a crucial role in the biosynthesis of flavonoids under salt-induced environments. These findings provide invaluable information on the identification of key genes involved in elucidating flavonoid biosynthesis mechanisms and serve as a basis for the improvement of the halophyte AVF’s quality.
DOI: 10.6084/m9.figshare.24610119.v2
title: Transcriptomics-based identification of transcription factors in the halophyte <i>Apocynum venetum</i> L.

description: The medicinal halophyte plant <i>Apocynum venetum</i> L. can tolerate high salt levels in the soil, which significantly affects its growth and development. To study the molecular mechanisms underlying its environmental adaptations, omics tools were employed. <i>Apocynum venetum</i> L. plants were subjected to varying levels of salt stress. The corresponding RNA of Apocyni Veneti Folium (AVF), the leaf of <i>Apocynum venetum</i> L., was sequenced using a <i>de novo</i> approach. Functional annotation and expression analysis were utilised to identify differentially expressed transcription factors (TFs). The classification of these TFs was further divided into different families, including AP2/ERF, bHLH, WRKY, and HSF. Under conditions of modest saline stress, the majority of TF genes exhibited a predilection for up-regulation, particularly <i>bHLHs</i>, which were discovered to be consistent with the build-up of flavonoid glycosides. In conjunction with previous proteomics and metabolomics findings, we have discovered that the gene bHLH35 is a potential candidate. This gene has shown changes at both the transcript and protein levels, indicating that it may play a crucial role in the biosynthesis of flavonoids under salt-induced environments. These findings provide invaluable information on the identification of key genes involved in elucidating flavonoid biosynthesis mechanisms and serve as a basis for the improvement of the halophyte AVF’s quality.
DOI: 10.15468/dl.qggufq
title: Occurrence Download

description: A dataset containing 173047 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arabidopsis thaliana (L.) Heynh., Arabidopsis thaliana Schur, 1866, Arabidopsis thaliana var. brachycarpa Andr.)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1943",
 "Year is less than or equal to 2023",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 173047 records from 1140 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065814-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24610119.v1
title: Transcriptomics-based identification of transcription factors in the halophyte <i>Apocynum venetum</i> L

description: The medicinal halophyte plant <i>Apocynum venetum</i> L. can tolerate high salt levels in the soil, which significantly affects its growth and development. To study the molecular mechanisms underlying its environmental adaptations, omics tools were employed. <i>Apocynum venetum</i> L. plants were subjected to varying levels of salt stress. The corresponding RNA of Apocyni Veneti Folium (AVF), the leaf of Apocynum venetum L., was sequenced using a <i>de novo</i> approach. Functional annotation and expression analysis were utilised to identify differentially expressed transcription factors (TFs). The classification of these TFs was further divided into different families, including AP2/ERF, bHLH, WRKY, and HSF. Under conditions of modest saline stress, the majority of TF genes exhibited a predilection for up-regulation, particularly <i>bHLHs</i>, which were discovered to be consistent with the build-up of flavonoid glycosides. In conjunction with previous proteomics and metabolomics findings, we have discovered that the gene bHLH35 is a potential candidate. This gene has shown changes at both the transcript and protein levels, indicating that it may play a crucial role in the biosynthesis of flavonoids under salt-induced environments. These findings provide invaluable information on the identification of key genes involved in elucidating flavonoid biosynthesis mechanisms and serve as a basis for the improvement of the halophyte AVF’s quality.
DOI: 10.15468/dl.ehgr64
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apistogramma borelli (Regan, 1906)"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0290561-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qopcxl
title: Occurrence Download

description: A dataset containing 521 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bayerische Donau - Leipheim"
 ]
}

 The dataset includes 521 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010020-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dv47ur
title: Occurrence Download

description: A dataset containing 2864 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Pleurodema brachyops (Cope, 1869))"
 ]
}

 The dataset includes 2864 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065793-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7uf8rc
title: Occurrence Download

description: A dataset containing 1473 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allamanda blanchetii A.DC."
 ]
}

 The dataset includes 1473 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0290550-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.22794731
title: Market Verileri

description: marketten alınan ürünlere ait veri seti