cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4574508
title: ToC2ME Receiver Coordinates

description: Receiver coordinates for the ToC2ME dataset in easting and northing, units of m. Relative coordinates are used for the 69 stations and the station numbers match those in the IRIS repository for this dataset. The IRIS station coordinates in lat/long can be accessed at https://ds.iris.edu/mda/5B/?starttime=2016-01-01T00:00:00&endtime=2017-12-31T23:59:59 More information about this dataset can be found at https://github.com/ToC2ME
DOI: 10.5281/zenodo.4574507
title: ToC2ME Receiver Coordinates

description: Receiver coordinates for the ToC2ME dataset in easting and northing, units of m. Relative coordinates are used for the 69 stations and the station numbers match those in the IRIS repository for this dataset. The IRIS station coordinates in lat/long can be accessed at https://ds.iris.edu/mda/5B/?starttime=2016-01-01T00:00:00&endtime=2017-12-31T23:59:59 More information about this dataset can be found at https://github.com/ToC2ME
DOI: 10.25345/c54v3h
title: MassIVE MSV000086973 - Systematic characterization of gut microbiome-secreted molecules by integrated multi-omics
title: Systematic characterization of gut microbiome-secreted molecules by integrated multi-omics
DOI: 10.13012/b2idb-7897650_v1
title: Acceleration and strain data for free vibration of pre-tensioned, partially-submerged beams

description: The data provided herein is accelerometer and strain data taken from free vibration response of pre-tensioned, partially submerged steel beam specimens (modulus of elasticity assumed = 29,000 ksi). The specimens were subjected to various levels of pre-tension, and various levels of submersion in water. The purpose of the testing was to quantify the effects of partial submersion on the vibrating frequencies of pretensioned beams. Three specimens were tested, each with different cross section (but identical cross-sectional area). The different cross sections allow investigation of the effects of specimen width as the specimen vibrates through water. The testing procedure was as follows: 1) Apply a specified level of tension in the beam. Measure tension via 3 strain gages. 2) Submerge the specimens to a specified depth of water 3) Excite the beams with either a hammer impact or a pull-and-release method (physically pull the middle of the bar and quickly release) 4) Measure the free vibration of the beam with 2 accelerometers. Schematic drawings of the test setup and the test specimens are provided, as is a picture of the test setup.
DOI: 10.5281/zenodo.4009846
title: Input Data for "Molecular Lignin Solubility and Structure in Organic Solvents"

description: Input structures for a manuscript, along with selected output data and structures. This directory structure contains a cut-down copy of the directories used to generate the simulation data and the analysis. In order to make this fit into the 50GB Zenodo limit, it was constructed with the following tar command: `tar -zcvf ligninsolvationstudy.tar.gz --exclude="*BAK" --exclude="*#" --exclude="*xtc" --exclude="*gro" --exclude="*log" --exclude="*[0-9].out" --exclude="*npz" --exclude="*pkl" --exclude="*npy" --exclude="*png" --exclude="*bmim*" --exclude="*old" --exclude="*dcd" --exclude="*tmp" --exclude="*xst" --exclude="*edr" --exclude="*txt" --exclude="*state_prev.cpt" LigninSolvation`, which intentionally excludes large files. The full dataset is available upon request. <strong>Directory Descriptions</strong> <strong>BuildSolventBoxes</strong> contains the scripts and inputs needed to make the solvent boxes suitable for use with the VMD solvate plugin.<br> <strong>BuildSystems</strong> assembles the lignin polymers and solvates them into a complete simulation system. Depends on the outputs from [LigninBuilder](https://github.com/jvermaas/LigninBuilder).<br> <strong>Equilibrium</strong> has all the equilibrium trajectories and the scripts needed to set them up.<br> <strong>FEP</strong> has the free energy perturbation calculation key outputs (the fepout files) and the scripts needed to set up the calculation and analyze them. The scripts are <em>mostly</em> python scripts, but some are also in tcl, and have the appropriate file endings. GROMACS run input files (.tpr) and namd configuration files (.namd) may also be of general interest.
DOI: 10.5281/zenodo.4009845
title: Input Data for "Molecular Lignin Solubility and Structure in Organic Solvents"

description: Input structures for a manuscript, along with selected output data and structures. This directory structure contains a cut-down copy of the directories used to generate the simulation data and the analysis. In order to make this fit into the 50GB Zenodo limit, it was constructed with the following tar command: `tar -zcvf ligninsolvationstudy.tar.gz --exclude="*BAK" --exclude="*#" --exclude="*xtc" --exclude="*gro" --exclude="*log" --exclude="*[0-9].out" --exclude="*npz" --exclude="*pkl" --exclude="*npy" --exclude="*png" --exclude="*bmim*" --exclude="*old" --exclude="*dcd" --exclude="*tmp" --exclude="*xst" --exclude="*edr" --exclude="*txt" --exclude="*state_prev.cpt" LigninSolvation`, which intentionally excludes large files. The full dataset is available upon request. <strong>Directory Descriptions</strong> <strong>BuildSolventBoxes</strong> contains the scripts and inputs needed to make the solvent boxes suitable for use with the VMD solvate plugin.<br> <strong>BuildSystems</strong> assembles the lignin polymers and solvates them into a complete simulation system. Depends on the outputs from [LigninBuilder](https://github.com/jvermaas/LigninBuilder).<br> <strong>Equilibrium</strong> has all the equilibrium trajectories and the scripts needed to set them up.<br> <strong>FEP</strong> has the free energy perturbation calculation key outputs (the fepout files) and the scripts needed to set up the calculation and analyze them. The scripts are <em>mostly</em> python scripts, but some are also in tcl, and have the appropriate file endings. GROMACS run input files (.tpr) and namd configuration files (.namd) may also be of general interest.
DOI: 10.5281/zenodo.4574517
title: Curated list of shared resources and anonymised comments from Chat – OASPA Webinar: Open Book Metadata – February 24, 2021

description: <strong>A curated list of resources shared via webinar chat: OASPA webinar: Open Book Metadata</strong>
DOI: 10.5281/zenodo.4574516
title: Curated list of shared resources and anonymised comments from Chat – OASPA Webinar: Open Book Metadata – February 24, 2021

description: <strong>A curated list of resources shared via webinar chat: OASPA webinar: Open Book Metadata</strong>
DOI: 10.15468/ybkaup
title: Three new subterranean species of Baezia (Curculionidae, Molytinae) for the Canary Islands

description: This dataset contains the digitized treatments in Plazi based on the original journal article Garcia 1, Rafael, Andujarx, Carmelo, Oromi, Pedro, Emerson, Brent, Lopez, Heriberto (2021): Three new subterranean species of Baezia (Curculionidae, Molytinae) for the Canary Islands. Subterranean Biology 38: 1-18, DOI: http://dx.doi.org/10.3897/subtbiol.38.61733, URL: http://dx.doi.org/10.3897/subtbiol.38.61733
DOI: 10.15468/kkq2by
title: New record of Cyrtonotula Uvarov, 1939 (Blaberidae, Epilamprinae) from China, with three new species based on morphological and COI data

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wang, Yi-Shu, Chen, Rong, Jin, Du-Ting, Che, Yan-Li, Wang, Zong-Qing (2021): New record of Cyrtonotula Uvarov, 1939 (Blaberidae, Epilamprinae) from China, with three new species based on morphological and COI data. ZooKeys 1021: 127-143, DOI: http://dx.doi.org/10.3897/zookeys.1021.59526, URL: http://dx.doi.org/10.3897/zookeys.1021.59526
DOI: 10.15468/rrdbxu
title: A multilocus assessment reveals two new synonymies for East Asian Cyclommatus stag beetles (Coleoptera, Lucanidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yuan, Jiao Jiao, Chen, Dan, Wan, Xia (2021): A multilocus assessment reveals two new synonymies for East Asian Cyclommatus stag beetles (Coleoptera, Lucanidae). ZooKeys 1021: 65-79, DOI: http://dx.doi.org/10.3897/zookeys.1021.58832, URL: http://dx.doi.org/10.3897/zookeys.1021.58832
DOI: 10.15468/fpwqfm
title: A new species of the Asian leaf litter toad genus Leptobrachella Smith, 1925 (Anura, Megophryidae) from northwest Guizhou Province, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Cheng, Yan-Lin, Shi, Sheng-Chao, Li, Jiaqi, Liu, Jing, Li, Shi-Ze, Wang, Bin (2021): A new species of the Asian leaf litter toad genus Leptobrachella Smith, 1925 (Anura, Megophryidae) from northwest Guizhou Province, China. ZooKeys 1021: 81-107, DOI: http://dx.doi.org/10.3897/zookeys.1021.60729, URL: http://dx.doi.org/10.3897/zookeys.1021.60729
DOI: 10.15468/2xyse3
title: A new species of Cyrtodactylus Gray, 1827 (Squamata, Gekkonidae) from Yunnan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Liu, Shuo, Rao, Dingqi (2021): A new species of Cyrtodactylus Gray, 1827 (Squamata, Gekkonidae) from Yunnan, China. ZooKeys 1021: 109-126, DOI: http://dx.doi.org/10.3897/zookeys.1021.60402, URL: http://dx.doi.org/10.3897/zookeys.1021.60402
DOI: 10.15468/hqj7ex
title: Description of a new species of the genus Ameletus Eaton, 1885 (Ephemeroptera, Ameletidae) from Yunnan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Li, Xianfu, Luo, Yanping, Jiang, Jian, Wang, Lili, Tong, Xiaoli (2021): Description of a new species of the genus Ameletus Eaton, 1885 (Ephemeroptera, Ameletidae) from Yunnan, China. ZooKeys 1021: 37-51, DOI: http://dx.doi.org/10.3897/zookeys.1021.59927, URL: http://dx.doi.org/10.3897/zookeys.1021.59927
DOI: 10.15468/893asd
title: Two new species of Paraphytis (Hymenoptera, Aphelinidae) from Southwest China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Chen, Ye, Chen, Hai-feng, Li, Cheng-de (2021): Two new species of Paraphytis (Hymenoptera, Aphelinidae) from Southwest China. ZooKeys 1021: 53-63, DOI: http://dx.doi.org/10.3897/zookeys.1021.58962, URL: http://dx.doi.org/10.3897/zookeys.1021.58962
DOI: 10.15468/p429e3
title: A new species of the genus Euxaldar Fennah, 1978 (Hemiptera, Fulgoromorpha, Issidae) from China and revision on the molecular phylogeny of the family

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yang, Liang-Jing, Chang, Zhi-Min, Yang, Lin, Chen, Xiang-Sheng (2021): A new species of the genus Euxaldar Fennah, 1978 (Hemiptera, Fulgoromorpha, Issidae) from China and revision on the molecular phylogeny of the family. ZooKeys 1021: 19-35, DOI: http://dx.doi.org/10.3897/zookeys.1021.35510, URL: http://dx.doi.org/10.3897/zookeys.1021.35510
DOI: 10.15468/mgrdb9
title: A new European species of Ceratophysella (Collembola, Hypogastruridae) revealed by morphological data and DNA barcodes

description: This dataset contains the digitized treatments in Plazi based on the original journal article Skarzynski, Dariusz, Smolis, Adrian, Kovac, Ľubomir, Porco, David (2021): A new European species of Ceratophysella (Collembola, Hypogastruridae) revealed by morphological data and DNA barcodes. ZooKeys 1021: 1-18, DOI: http://dx.doi.org/10.3897/zookeys.1021.63147, URL: http://dx.doi.org/10.3897/zookeys.1021.63147
DOI: 10.25345/c51228
title: MassIVE MSV000086974 - Systematic characterization of gut microbiome-secreted molecules by integrated multi-omics
title: Systematic characterization of gut microbiome-secreted molecules by integrated multi-omics
DOI: 10.6084/m9.figshare.13537295
title: ErtenKokko2021_canstraint

description: - main_code.zip contains the MATLAB code used in this study, also found in https://github.com/yagmurerten/Canstraint<br>- canstraint_analytics.nb and canstraint_analytics_SI.nb are the Mathematica notebooks used for the analyses in the main text and supplementary information, respectively.<br>- popcheck.m is an additional script that was used to extract data from final .mat files (generates analysis_scripts/supp_data/supp_mature_popsize.txt).<br>- data_canstraint_baseline.zip, data_canstraint_nocancer1.zip, data_canstraint_nocancer2.zip and data_canstraint_nocancer3.zip contain raw simulation data.<br>- derived_data.zip contains the .rds files derived from the raw data and were used in generating figures in the main text and supplementary information. <br>- analysis_scripts.zip contains processing scripts used to generate the derived data and make the figures in the main text and Supplementary Information.<br>
DOI: 10.6084/m9.figshare.13537295.v3
title: ErtenKokko2021_canstraint

description: - main_code.zip contains the MATLAB code used in this study, also found in https://github.com/yagmurerten/Canstraint<br>- canstraint_analytics.nb and canstraint_analytics_SI.nb are the Mathematica notebooks used for the analyses in the main text and supplementary information, respectively.<br>- popcheck.m is an additional script that was used to extract data from final .mat files (generates analysis_scripts/supp_data/supp_mature_popsize.txt).<br>- data_canstraint_baseline.zip, data_canstraint_nocancer1.zip, data_canstraint_nocancer2.zip and data_canstraint_nocancer3.zip contain raw simulation data.<br>- derived_data.zip contains the .rds files derived from the raw data and were used in generating figures in the main text and supplementary information. <br>- analysis_scripts.zip contains processing scripts used to generate the derived data and make the figures in the main text and Supplementary Information.<br>
DOI: 10.6084/m9.figshare.13537295.v2
title: ErtenKokko2021_canstraint

description: - main_code.zip contains the MATLAB code used in this study, also found in https://github.com/yagmurerten/Canstraint<br>- canstraint_analytics.nb and canstraint_analytics_SI.nb are the Mathematica notebooks used for the analyses in the main text and supplementary information, respectively.<br>- popcheck.m is an additional script that was used to extract data from final .mat files (generates analysis_scripts/supp_data/supp_mature_popsize.txt).<br>- derived_data.zip contains the .rds files derived from the raw data and were used in generating figures in the main text and supplementary information. <br>- analysis_scripts.zip contains processing scripts used to generate the derived data and make the figures in the main text and Supplementary Information.<br>
DOI: 10.5517/ccdc.csd.cc26lkhw
title: CCDC 2043628: Experimental Crystal Structure Determination

description: Related Article: Ke Wu, Yichen Ling, Nan Sun, Baoxiang Hu, Zhenlu Shen, Liqun Jin, Xinquan Hu|2021|Chem.Commun.|57|2273|doi:10.1039/D0CC07743G
DOI: 10.6073/pasta/89a040985251e16c3102c2571fc4459a
title: Does water-bath cleaning affect the health of visiting birds? A study of parasite loads in house finches (Haemorhous mexicanus) in the Phoenix, Arizona, USA metropolitan area (2018)

description: There is evidence that urban animals have higher parasite and pathogen burdens than those from natural areas, but the mechanism behind this pattern is unclear. One possibility for yard-visiting birds is that they drink from bird baths that have not been regularly cleaned and thus they have elevate infection risks and rates by consuming unusually soiled water. We experimentally tested this idea in house finches (Haemorhous mexicanus) – a common backyard visitor in North America – by implementing a rotating bath-cleaning regime, where we either left baths uncleaned for 5 weeks or cleaned them daily with dilute bleach for 5 weeks, and did so at both an urban and rural study site. We found that coccidian endoparasitism decreased in urban birds when they drank from clean baths, but the same was not true for rural birds. These results reveal a habitat-specific effect of feeder cleaning on disease status in an abundant yard-visiting songbird.
DOI: 10.6073/pasta/87e094f1ed3c3cc87dd8eca019f309dd
title: Lovebirds perch in building vents to cool down during hot times of year, a study of rosy-cheeked lovebirds (Agapornis roseicollis) in the Phoenix, Arizona, USA metropolitan area (2018-2019)

description: Extreme heat can place significant environmental and physiological pressures on animals. One means of tolerating extreme thermal conditions is to seek cool microclimates. Few empirical studies have documented use by wild animals of human-provided cool microsites as means of thermoregulating. Here we show that rosy-cheeked lovebirds in Phoenix, Arizona – the hottest city in North America – use relief air vents on the face of a building (which direct cool air outdoors when internal air-conditioning systems are on) as perching sites, and only during extremely hot times of day and year (&gt; 45 C). Though this highlights a wasteful anthropogenic energy system (the product of an old building with outdated temperature-control technology), our results reveal how an introduced bird species (from Africa) can tolerate extreme thermal conditions in the novel environment.
DOI: 10.5281/zenodo.4574555
title: Not Scared of Chemistry Knowledge Graph

description: A combination of ExCAPE-DB, BioGRID, HomoloGene, and chemical similarities in a knowledge graph.
DOI: 10.5066/p9t3lm1c
title: Ploidy and genome size estimates of artificially produced larval pallid sturgeon, Scaphirhynchus albus

description: Data consist of flow cytometry files (.FCS) that were generated in the analysis of larval pallid sturgeon specimens. Nuclei from produced larval sturgeon somatic cells were analyzed using flow cytometry to estimate genome size and assign ploidy. Freshly collected rainbow trout (Oncorhynchus mykiss), largemouth bass (Micropterus salmoides), or pallid sturgeon blood were used as external controls, whereby the fish blood samples were analyzed in separate tubes from the cells of prepared sturgeon larvae. All samples at 1 x 10^6 cells/mL were incubated in a propidium iodide solution to stain DNA, then analyzed by flow cytometry. Analysis software generated histograms from the experimental samples and the control standard samples. The histogram peak channels (modes) were then compared to generate a genome size estimate and additionally to visualize peaks for ploidy categorization.
DOI: 10.7277/w5b4-kz48
title: Dynamic Passive Pressure on Full-Scale Pile Caps: Phase 1 (NEES-2005-0042)

description: &lt;p&gt;&lt;strong&gt;Title&lt;/strong&gt;: Dynamic Passive Pressure on Full-Scale Pile Caps: Phase 1 (NEES-2005-0042)&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Year Of Curation: &lt;/strong&gt;2011&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Description: &lt;/strong&gt;BYU&#39;s research focuses on the behavior of soil behind a full-scale foundation when subjected to earthquake-like loadings. It is the backfill soil which helps prevent excessive horizontal movement of foundations during earthquakes. The amount of resistance provided by a backfill soil depends on many factors, including: soil type, soil density, and the potential amount of foundation movement. Horizontal forces from earthquakes introduce other factors such as large, repetitive movements and high rates of loading. The effects of these factors on soil resistance are not well quantified. This project will use loading rams (i.e., actuators) and a shaker mounted to a foundation to approximate an earthquake loading. The resistance provided by various backfill soils under different magnitudes and rates of cyclic loading will then be determined.&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Award: &lt;/strong&gt;http://www.nsf.gov/awardsearch/showAward?AWD_ID=0421312&lt;/p&gt; &lt;p&gt;&lt;strong&gt;PIs &amp; CoPIs: &lt;/strong&gt;Travis Gerber, Kyle Rollins&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Dates: &lt;/strong&gt;August 08, 2005 to Present&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Organizations: &lt;/strong&gt;Brigham Young University, UT, United States,    University of California, Los Angeles, CA, United States&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Facilities: &lt;/strong&gt;Brigham Young University, UT, United States,    University of California, Los Angeles, CA, United States&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Sponsor: &lt;/strong&gt;NSF - 0421312&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Keywords: &lt;/strong&gt;Soil Structure Interaction, Lateral Forces, Shaker, Backfill Soil, Soil Resistance&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Publications: &lt;/strong&gt;--&lt;/p&gt; &lt;nb:citations&gt;&lt;/nb:citations&gt;
DOI: 10.17632/ck58w4rstv.1
title: Ca/Al ratio in sediments from the Santa Catarina Plateau and the Ioffe Drift
DOI: 10.17632/r5snpvg5ty.1
title: Genome wide association study and identification of a protective missense variant on lipoprotein(a) concentration - GWAS summary statistics data files

description: GWAS summary statistics data files related to the article "Genome wide association study and identification of a protective missense variant on lipoprotein(a) concentration" by Said et al.
DOI: 10.17632/gb5bd386g4.1
title: Data, Models, and Scripts of Integrated Physiological Model of Virtual Diabetic Patient for Machine Learning Research

description: Machine Learning (ML) based predictive models of blood glucose forecasting for diabetic patient produce future glucose trend without any physiological explanation. In this research effort, operation research (OR) is adopted by building a constraint-based physiological model of a diabetic patient with exercise dynamics for producing explanation from ML-based forecasting. The proposed constraint-based diabetic model is implemented in MATLAB/Simulink environment and validated with clinical and free-living datasets. Then the model is applied for OR on forecasting of a Feed-Forward Neural Network (FFNN) which is built on continuous glucose monitoring (CGM) profile along with carbohydrate and physical activity data of a type-2 diabetic patient. This material set contains all Simulink model files, MATLAB scripts, the experimental datasets used for building and validating physiological and ML models, and result files.
DOI: 10.17632/m8wn5y2wny.1
title: The Influence of Starch Origin on the Properties of Starch Films: Packaging Performance

description: The films were made from various starches such as that from maize, potato, oat, rice, and tapioca using 50%w of glycerine as a plasticizer. The obtained starch-based films were made using the well-known casting method from a starch solution in water. The properties of the films that were evaluated were tensile strength, water vapour transition rate, moisture content, wetta-bility, and their surface free energy was determined. Surface free energy (SFE) and its polar and dispersive components were calculated using the Owens-Wendt-Rabel-Kaelbe approach. The values of SFE in the range of 51.64 to 70.81 mJ∙m−2 for the oat starch-based film and the maize starch-based film. The films revealed worse mechanical properties than those of conventional plastics for packaging purposes. The results indicated that the poorest tensile strength was exhibited by the starch-based films made from oat (0.36 MPa) and tapioca (0.78 MPa) and the greatest tensile strength (1.49 MPa) from potato.
DOI: 10.17632/p4sr6zh84h.1
title: Xue and Liu-RNA-seq Mn toxicity-BBE

description: Data for "Transcriptome analysis of soybean leaves response to manganese toxicity "in Biotechnology & Biotechnological Equipment. Soybean leaves treated with 5 or 100 uM Mn, RNA-seq was used for the whole gene expressions. A total of 38,022 expressed genes were identified, and 2,258 were differentially expressed genes.
DOI: 10.17632/vpm6m3fkcp.1
title: Attitudes of a Sample of Middle Eastern Young Adults toward Different Available COVID-19 Vaccines

description: The attached data were gathered to evaluate the attitudes of a sample of Middle Eastern young adults toward different available COVID-19 vaccines
DOI: 10.17632/7jy4jrjhxz.1
title: TURKISH PRESCHOOL TEACHERS' PERCEPTIONS

description: TURKISH PRESCHOOL TEACHERS' PERCEPTIONS
DOI: 10.17632/6259b85jgs.1
title: Economic data

description: This dataset is used in research.