cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/297c4e318a62b80340bba6ba5184a37d
title: AWE01 Meteorological data from the konza prairie headquarters weather station

description: The following weather data are included in this data set: hourly: mean temperature, mean relative humidity, mean wind speed, total precipitation total solar radiation, wind direction, max wind speed (sampled on the hour; record type 1) ; daily: mean, maximum and minimum air temperature, relative humidity, total precipitation, total solar radiation; mean, maximum and minimum soil temperature, average wind speed (sampled at midnight; record type 2). These data are collectecd by a micrologger at headquarters on Konza Prairie.
DOI: 10.6084/m9.figshare.1004612
title: Spectra evolution during coating

description: This zip contains a series of spectra recorded from an fibre optic (Fibercore PS750) with a 97um LPG of length 35mm, using an Ocean Optics S2000 spectrophotometer). Each spectra was taken after a simple Langmuir Blodgett layer of calix[4]resorcinarene C11 was applied. The first file (0) has no coating and contistutes bare fibre. This data is referenced in our companion paper "Long period grating based toluene sensor for use with water contamination"
DOI: 10.6084/m9.figshare.24290815
title: Supplementary Material for: Machine learning for the prediction of survival post-allogeneic hematopoietic cell transplantation: A single-center experience

description: Introduction: Prediction of outcomes following allogeneic hematopoietic cell transplantation (HCT) remains a major challenge. Machine learning (ML) is a computational procedure that may facilitate the generation of HCT prediction models. We sought to investigate the prognostic potential of multiple ML algorithms when applied to a large single-center allogeneic HCT database. Methods: Our registry included 2697 patients that underwent allogeneic HCT from January 1976 to December 2017, 45 pre-transplant baseline variables were included in the predictive assessment of each ML algorithm on overall survival (OS) as determined by area under the curve (AUC). Pre-transplant variables used in the EBMT machine learning study (Shouval et al, 2015) were used as a benchmark for comparison. Results: On the entire dataset, the random forest (RF) algorithm performed best (AUC 0.71±0.04) compared to the second-best model, logistic regression (LR) (AUC=0.69±0.04) (p&lt;0.001). Both algorithms demonstrated improved AUC scores using all 45 variables compared to the limited variables examined by the EBMT study. Survival at 100 days post-HCT using RF on the full dataset discriminated patients into different prognostic groups with different 2-year OS (p&lt;0.0001). We then examined the ML methods that allow for significant individual variable identification, including LR and RF, and identified matched related donors (HR=0.49, p&lt;0.0001), increasing TBI dose (HR=1.60, p=0.006), increasing recipient age (HR=1.92, p&lt;0.0001), higher baseline Hb (HR=0.59, p=0.0002) and increased baseline FEV1 (HR=0.73, p=0.02), among others. Conclusion: The application of multiple ML techniques on single center allogeneic HCT databases warrants further investigation and may provide a useful tool to identify variables with prognostic potential.
DOI: 10.7294/22582432
title: LegacyTreeData v2

description: A repository of individual tree measurements of volume, weight, and physical properties. As of April 2023 the collection included records from over 290,000 trees, most of which were felled, and measured for stem taper and volume. Weight measurements were compiled on over 23,000 of the trees subjected to destructive sampling. Biomass components included stem wood and bark, branches, and foliage, including 11,209 trees having direct estimates of aboveground biomass (AGB). Stem volumes are recorded for over 248,600 trees, 81% of which included stem taper measurements. Over 300 species are represented in the stem volume data, with ≥ 100 trees sampled on 114 of the species in the data set. The collection spans over 100 years of fieldwork where detailed tree measurements were collected by private companies, government agencies – primarily the US Forest Service, and university researchers. Compiling these data from past studies depended largely on people and institutions who served for decades as stewards of the data and record-keepers. The information compiled here was often derived from larger collections of data and archival materials that in some cases included study plans, field notes, or other pertinent information. We preserved as much of this as was practical in supplementary files not archived here but available through a searchable, downloadable database online at https://www.legacytreedata.org.
DOI: 10.15124/53c8fd02-4b3f-4fb9-908e-60c487d5615b
title: Open-access data for paper "Neutron polarisation transfer, $C_{x'}^n$, in $\pi^+$ photoproduction off the proton"

description: Processed data used for the paper
DOI: 10.1285/i20705948v10n1p14
title: Short and long-term forecasting using artificial neural networks for stock prices in Palestine: a comparative study

description: To compare the forecast accuracy, Artificial Neural Networks, Autoregressive Integrated Moving Average and regression models were fit with training data sets and then used to forecast prices in a test set. Three different measures of accuracy were computed: Root Mean Square Error, Mean Absolute Error and Mean Absolute Percentage Error. To determine how the accuracy depends on sample size, models were compared between daily, monthly and quarterly time series of stock closing prices from Palestine.
DOI: 10.17632/m2brb3dw2g.1
title: Effect of multi-scale cracks on seismic waves propagating in tight sandstones

description: The data used for the manuscript prepared under the name of "Effect of multi-scale cracks on seismic waves propagating in tight sandstones" are lised here.
DOI: 10.34820/fk2/hdywxw
title: Sundanese-Indonesian Parallel Corpus

description: Data ini berisi 3616 baris kalimat bahasa Sunda yang diambil dari majalah bahasa Sunda online Mangle, Dewan Dakwah Jabar, dan Balebat, dan diterjemahkan ke dalam bahasa Indonesia oleh beberapa mahasiswa prodi bahasa Sunda UPI Bandung.
DOI: 10.5281/zenodo.6674034
title: Contact Endoscopy – Narrow Band Imaging (CE-NBI) Data Set for Laryngeal Lesion Assessment

description: The endoscopic examination of subepithelial vascular variations of vocal folds can provide complementary diagnostic information for clinicians regarding the development of benign and malignant laryngeal lesions. As one novel technique, Contact Endoscopy combined with Narrow Band Imaging (CE-NBI) can provide real-time and enhanced visualization of these vascular structures. Several studies have addressed the concern of subjective evaluation of CE-NBI images, resulting in the development of multiple computer-based solutions. We introduce the CE-NBI data set, the first publicly available data set with enhanced and magnified visualization of vocal fold subepithelial blood vessels. It comprises 11144 images of 210 adult patients with benign and malignant lesions in the vocal fold. Image annotations include as following for all images of every patient: Diagnosed laryngeal histopathology label. Lesion type benign-malignant label. Leukoplakia diagnosis label. The dataset consists of two main categories: benign and malignant images. In each category, the images of every patient are ordered according to the laryngeal histopathology class. Additionally, one Excel file is provided to map the image files of each patient to three image labels and image dimensions. This data has successfully been used to perform clinical evaluations as well as design and develop multiple Machine Learning (ML)-based algorithms for laryngeal cancer assessment.
description: {"references": ["Esmaeili, Nazila, et al. \"Novel automated vessel pattern characterization of larynx contact endoscopic video images.\" International journal of computer assisted radiology and surgery 14.10 (2019): 1751-1761.", "Davaris, Nikolaos, et al. \"Evaluation of vascular patterns using contact endoscopy and narrow-band imaging (CE-NBI) for the diagnosis of vocal fold malignancy.\" Cancers 12.1 (2020): 248.", "Esmaeili, Nazila, et al. \"Laryngeal lesion classification based on vascular patterns in contact endoscopy and narrow band imaging: manual versus automatic approach.\" Sensors 20.14 (2020): 4018.", "Esmaeili, Nazila, et al. \"Cyclist effort features: A novel technique for image texture characterization applied to larynx cancer classification in contact endoscopy\u2014Narrow band imaging.\" Diagnostics 11.3 (2021): 432.", "Esmaeili, Nazila, et al. \"Deep Convolution Neural Network for Laryngeal Cancer Classification on Contact Endoscopy-Narrow Band Imaging.\" Sensors 21.23 (2021): 8157."]}
DOI: 10.5281/zenodo.8342
title: Data Sets Of Matching Molecular Series

description: A total of 30,452 and 45,607 target-based MMS are provided for the Ki- and IC50-based data sets from ChEMBL release 17. For each MMS in a target set, the corresponding compounds are given and ordered by increasing potency. The structures of MMS, value fragments and individual compounds are provided in canonical SMILES representation.
DOI: 10.6084/m9.figshare.23622882
title: Supplementary Material for: Association of Hypoxia-Inducible Factor Prolyl Hydroxylase Inhibitors with Cardiovascular Events and Death in Dialysis Patients: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Anemia is a common finding among patients with advanced chronic kidney disease, especially those on dialysis. The recent introduction of hypoxia-inducible factor prolyl hydroxylase inhibitors (HIF-PHIs) has raised some concerns about the cardiovascular and thrombotic complications of this class of drugs. <b><i>Objectives:</i></b> This meta-analysis aimed to assess the safety of HIF-PHIs in patients with end-stage kidney disease (ESKD) versus standard therapy with erythropoiesis-stimulating agents (ESAs). <b><i>Methods:</i></b> Databases were searched on April 2022. Studies that reported incidence of all-cause mortality; major cardiovascular adverse events (MACEs); myocardial infarction (MI); stroke and thrombotic events in the use of HIF-PHIs or ESA on ESKD patients in hemodialysis or peritoneal dialysis were evaluated. Data were extracted from published reports, and quality assessment was performed per Cochrane recommendations. <b><i>Results:</i></b> 12,821 patients from ten randomized controlled trials were included in this study. Most patients (83%) were on hemodialysis. 6,461 (50.3%) were using HIF-PHIs, and 6,360 (49.6%) were in the ESA group. The pooled estimated incidence of all-cause mortality was 769 in the HIF-PHIs group (relative-risk ratios (RR): 1.04; confidence interval (CI): 0.95–1.14; <i>p</i> = 0.52; I<sup>2</sup> = 0%). There was no difference in the groups regarding the outcomes of MACE in the analysis of the three studies that reported this outcome (RR: 0.95; CI: 0.87–1.04; <i>p</i> = 0.69; I<sup>2</sup> = 0%). In addition, there was no statistical difference among the outcomes of MI, stroke, or thrombotic events. <b><i>Conclusions:</i></b> Among patients with ESKD on dialysis, the use of HIF-PHIs was non-inferior regarding the safety outcomes when compared to standard of care therapy.
DOI: 10.6084/m9.figshare.24481201
title: Relationship between soil properties and plant biotype in response to grazing

description: Data were extracted from articles published on the subject of grassland grazing activities on soil organic carbon and other soil properties in temperate environments in China under different plant biotypes.
DOI: 10.6084/m9.figshare.24481201.v1
title: Relationship between SOC and grazing in temperate grasslands

description: Data were extracted from articles published on the subject of grassland grazing activities on soil organic carbon and other soil properties in temperate environments in China
DOI: 10.17632/2zt252t9gv.1
title: Cabinet conflicts in Belgium (1979-2018)

description: Original data on 973 conflicts in Belgian cabinets between 1979 and 2018 (central level), based on two data sources: political yearbooks and news agency articles. Includes variables grasping e.g. each conflict's topic, description, intensity, outcome, communal sides (absence/presence/detailed nature), and communal issue (absence/presence). Codebook and logbook available on demand.
DOI: 10.17632/zvyt86jffd.1
title: Cabinet conflicts in Belgium (1979-2018) - Extended version

description: Extended version of the 'Cabinet conflicts in Belgium (1979-2018)' dataset (doi: 10.17632/2zt252t9gv.2). Data on conflicts in Belgian cabinets between 1979 and 2018 (central level), based on the manual coding of two data sources: political yearbooks (1979-2006; N=364 conflicts) and an extended coding of news agency articles (1995-2018; N=1090 conflicts). Includes an extensive description of each conflict and variables grasping their intensity, outcome (yearbook data), situations of doubt, and two variables grasping communal sides (absence/presence vs. detailed nature). The variables grasping the presence or absence of communal issues is now complemented with a new variable that distinguishes between different types of communal issues. Codebook and logbook available on demand.
DOI: 10.17632/bmkzcyyrwp.1
title: Get AQI in One Shot-3 (GAOs-3)

description: A self-supervised learning dataset for AQI monitoring based on deep learning, will be disclosed after manually removing pedestrian and license plate information.
DOI: 10.17632/h263bgxmb5.1
title: TOX inhibits fatal autoimmune hepatitis by mitigating IL-17A production of γδ T cells via stabilization of TCF-1

description: Proteins from DN2 thymocyte lysis derived from 2 week-old wild-type mice were immunoprecipitated with anti-TOX antibody, separated by SDS-PAGE, and then visualized with Coomassie brilliant blue staining. Protein in-gel digestion and LC-MS/MS analysis were performed and the resulting spectra were mapped to Mus_musculus_Uniprot database by the search engines: Proteome Discoverer 2.2 (PD 2.2, Thermo). Our data showed that TOX combined with TCF1, thereby exerting the function of stabilization for TCF1 and regulating the development of thymocytes and inflammation in mice.
DOI: 10.17632/n9t823m5c8.1
title: Catenary action in strip-reinforced wood beams

description: This study evaluated the catenary action in strip-reinforced wood beams, with tests carried out on carbon-fibre reinforced beech clearwood beams in a three-point bending setup. Experimental data for this study are available for download here.
DOI: 10.15129/acc3d16d-5f28-4869-8d9f-af3a634af1a3
title: Data for: "Investigation of the influence of pH on the mechanical properties and morphology of gelatin hydrogels"

description: Data for swell testing, texture analysis, polarimetry, zeta potential, pH titrations and NMR spectroscopy.
DOI: 10.17864/1947.000500
title: Dataset supporting 'Effects of food matrix on the prebiotic efficacy of inulin-type fructans: a randomised trial'

description: This dataset was collected as part of my PhD thesis 'An exploration of the prebiotic concept: from food matrix to mood state'. The aim of this study was to determine the effect of the food matrix on the prebiotic efficacy of inulin-type fructans. This dataset contains the individual level participant bacterial load and composition, gastrointestinal sensation and bowel habit data collected throughout the course of the ten-day intervention, along with all original 16S rRNA sequencing reads.
DOI: 10.17864/1947.000510
title: Dataset supporting '2’fuscosyllactose – A deeper dive into responder/non-responder status. A follow-up to the result from the EFFICAD trial'

description: This dataset was collected as part of my PhD thesis ‘An exploration of the prebiotic concept: from food matrix to mood state’. The principle point of interest in this follow-up analysis to the EFFICAD trial was to identify differences in microbial responses between non-responders and responders to 2’fucosyllactose supplementation, along with exploring potential differences in gastrointestinal sensation, bowel habits and mood state between non-responders and responders. This dataset contains the individual level participant bacterial load and composition, gastrointestinal sensation and bowel habit, and mood state data collected throughout the course of the five-week intervention segregated by responder status, along with a separate zip file containing all original 16S rRNA sequencing reads.
DOI: 10.5281/zenodo.10065771
title: Correlation challenges for North Sea offshore wind power: a Norwegian case study

description: Dataset and results from this study: Hjelmeland, M., & Nøland, J. K. (2023). Correlation challenges for North Sea offshore wind power: a Norwegian case study. Scientific Reports 2023 13:1, 13(1), 1–17. https://doi.org/10.1038/s41598-023-45829-2
The git hub repo with source code can be found here: https://github.com/martinhjel/wind-covariation
DOI: 10.5281/zenodo.10065770
title: Correlation challenges for North Sea offshore wind power: a Norwegian case study

description: Dataset and results from this study: Hjelmeland, M., & Nøland, J. K. (2023). Correlation challenges for North Sea offshore wind power: a Norwegian case study. Scientific Reports 2023 13:1, 13(1), 1–17. https://doi.org/10.1038/s41598-023-45829-2
The git hub repo with source code can be found here: https://github.com/martinhjel/wind-covariation
DOI: 10.6084/m9.figshare.12156042
title: Biomass energy consumption and sustainable development

description: The purpose of this study is to analyze the impact of biomass energy consumption and non-renewable energy consumption on sustainable development in OECD countries. Data from 36 OECD member countries for the period 1990–2017 have been obtained with the System-GMM method. According to the estimation results, the effect of biomass energy consumption on per capita sustainable development is positive and statistically significant whereas the effect of non-renewable energy on sustainable development is negative. According to this, the use of biomass energy sources in these countries causes the level of per capita sustainable development to rise. OECD countries should prefer biomass energy instead of non-renewable energy sources to reach the 2030 SDGs. Thus, this study shows the importance of biomass energy for sustainable development.
DOI: 10.6084/m9.figshare.12156042.v1
title: Biomass energy consumption and sustainable development

description: The purpose of this study is to analyze the impact of biomass energy consumption and non-renewable energy consumption on sustainable development in OECD countries. Data from 36 OECD member countries for the period 1990–2017 have been obtained with the System-GMM method. According to the estimation results, the effect of biomass energy consumption on per capita sustainable development is positive and statistically significant whereas the effect of non-renewable energy on sustainable development is negative. According to this, the use of biomass energy sources in these countries causes the level of per capita sustainable development to rise. OECD countries should prefer biomass energy instead of non-renewable energy sources to reach the 2030 SDGs. Thus, this study shows the importance of biomass energy for sustainable development.
DOI: 10.6084/m9.figshare.14185739
title: Global monthly GPP, ET, Ec, Es and Ei simulated by PML-V2 with AVHRR data at a 0.05 degree resolution over 1982-2014

description: We provide global monthly and annual gross primary production(GPP), evapotranspiration (ET), canopy transpiration (Ec), soil evapiration (Es), rainfall interception loss (Ei) at a 0.05 degree resolution as simulated by PML-V2 forced with GLDAS V2.0 climate forcings, historical monthly CO2, AVHRR GIMMS3g LAI, GLASS V4 albedo and emissivity, MODIS IGBP land-use cover data etc.Please cite references bellow:Zhang, X. Z., Zhang, Y. Q., Ma, N., Kong, D. D., Tian, J., Shao, X. M., Tang, Q. H..(2021). Greening-induced increase in evapotranspiration over Eurasia offset by CO2-induced vegetational stomatal closure. Environmental Research Letters, 16(12), 124008. DOI: 10.1088/1748-9326/ac3532.Zhang, X. Z., Zhang, Y. Q., Tian, J., Ma, N., Wang, Y. P. (2022). CO2 fertilization is spatially distinct from stomatal conductance reduction in controlling ecosystem water-use efficiency increase. Environmental Research Letters. 17(5), 054048. DOI: 10.1088/1748-9326/ac6c9c.Zhang, Xuanze; Zhang, Yongqiang; Kong, Dongdong (2021). Global monthly GPP, ET, Ec, Es and Ei simulated by PML-V2 with AVHRR GIMMS3g LAI at a 0.05 degree resolution over 1982-2014. figshare. Dataset. https://doi.org/10.6084/m9.figshare.14185739.v4
DOI: 10.6084/m9.figshare.14185739.v5
title: Global monthly GPP, ET, Ec, Es and Ei simulated by PML-V2 with AVHRR GIMMS3g LAI at a 0.05 degree resolution over 1982-2014

description: We provide global monthly and annual gross primary production(GPP), evapotranspiration (ET), canopy transpiration (Ec), soil evapiration (Es), rainfall interception loss (Ei) at a 0.05 degree resolution as simulated by PML-V2 forced with GLDAS V2.0 climate forcings, historical monthly CO2, AVHRR GIMMS3g LAI, GLASS V4 albedo and emissivity, MODIS IGBP land-use cover data etc.Please cite references bellow:Zhang, X. Z., Zhang, Y. Q., Ma, N., Kong, D. D., Tian, J., Shao, X. M., Tang, Q. H..(2021). Greening-induced increase in evapotranspiration over Eurasia offset by CO2-induced vegetational stomatal closure. Environmental Research Letters, 16(12), 124008. DOI: 10.1088/1748-9326/ac3532.Zhang, X. Z., Zhang, Y. Q., Tian, J., Ma, N., Wang, Y. P. (2022). CO2 fertilization is spatially distinct from stomatal conductance reduction in controlling ecosystem water-use efficiency increase. Environmental Research Letters. 17(5), 054048. DOI: 10.1088/1748-9326/ac6c9c.Zhang, Xuanze; Zhang, Yongqiang; Kong, Dongdong (2021). Global monthly GPP, ET, Ec, Es and Ei simulated by PML-V2 with AVHRR GIMMS3g LAI at a 0.05 degree resolution over 1982-2014. figshare. Dataset. https://doi.org/10.6084/m9.figshare.14185739.v4
DOI: 10.25345/c5v98029n
title: MassIVE MSV000093238 - EInce_GCastro_Salinispora_crudes
title: Metabolites of Salinispora species isolated from Fiji marine sediments.
DOI: 10.6084/m9.figshare.24261385
title: Lili-Mip trajectories and results.zip

description: The unique viviparous Pacific Beetle cockroaches provide nutrition to their embryo by secreting milk proteins Lili-Mip, which is a lipid-binding glycoprotein that crystallizes in-vivo. The resolved in-vivo crystal structure of variably glycosylated Lili-Mip shows a classical Lipocalin fold with an eight-stranded antiparallel beta-barrel enclosing a<br>fatty acid. The availability of physiologically unaltered glycoprotein structure makes Lili-Mip a very attractive model system to investigate the role of glycans on protein structure, dynamics, and function. Towards that end, we have employed all-atom molecular dynamics simulations on various glycosylated stages of a bound and free Lili-Mip protein and characterized the impact of glycans and the bound lipid on the dynamics of this glycoconjugate.<br>Our work provides important molecular-level mechanistic insights into the role of glycans in the nutrient storage function of the Lili-Mip protein. Our analyses show that the glycans stabilize spatially proximal residues and regulate the low amplitude opening motions of the residues at the entrance of the binding pocket. Glycans also preserve the native orientation and conformational flexibility of ligand. However, we find that extreme glycosylation with highly complex glycans or deglycosylation affects the conformation and dynamics noticeably. A simple but effective distance- and correlation-based network analyses of the protein also reveal the key residues regulating the architecture and ligand binding characteristics of the barrel in response to glycosylation.