cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.m466f/26
title: RUB126_genotypes

description: Microsatellite genotypes at locus RUB126.  This is a tab-delimited text file in the format produced by Applied Biosystems GeneMapper software version 3.7.  Each sample*locus genotype is represented in one row.  The "Sample Name" column gives names of samples that directly correspond to those used in "species_chloroplast_latlong.csv".  The "Well" column indicates the location of the sample on the DNA dilution plates.  The "Marker" column indicates the microsatellite marker.  The "Panel" column indicates groups of markers that were run simultaneously on the ABI3100 capillary sequencer.  The "Dye" column indicates the fluorescent tag used to detect the PCR fragments: Y for NED, G for HEX, and B for FAM.  The "Allele" columns contain the names of all alleles detected for each genotype.  Cells are left blank if fewer alleles were detected than the number of columns.  A value of -9 for Allele 1 indicates missing data.  The "Height" columns indicate the height of the peak representing each allele, and the "Size" columns indicate the exact size of the DNA fragment as calculated by GeneMapper.  A value of "TRUE" in the "AE" column indicates that the genotype was manually edited in GeneMapper, although all genotypes were visually inspected.  The R package "polysat" can read these file directly, and will use the "Sample Name", "Marker", and "Allele" columns, and will ignore all other columns.
DOI: 10.5061/dryad.m466f/38
title: rubus_photos5

description: Photographs of plants at sites PLV, RSB, SDW, SFD, SRP, TCM, WIN, and WSH.  Sample IDs can be seen in the images.  Images are in .jpg format.
DOI: 10.5061/dryad.mg040/9
title: Alignments for each gene segment
DOI: 10.5061/dryad.pm166/1
title: Supplementary file 1

description: Breeding chorus of Beddomixalus bijui
DOI: 10.5061/dryad.pm166/2
title: Supplementary file 2

description: Advertisement call of Mercurana myristicapalustris
DOI: 10.5061/dryad.qp367/1
title: Matched sequence clusters across 4 loci
DOI: 10.5061/dryad.rm266/1
title: RAW_MICROSAT_DATA_FOR_DRYAD

description: Microsatellite data for the loci and populations described in the manuscript. Data are in CONVERT format, which can easily be converted to many other formats using either the program CONVERT or PGDSpider.
DOI: 10.5061/dryad.s5j81/1
title: Environmental_data
DOI: 10.5061/dryad.s5j81/2
title: full_genotype_calls
DOI: 10.5061/dryad.s5j81/3
title: Summarized_ASGE_data
DOI: 10.5061/dryad.t3pr6/1
title: SuppTableS3_Final

description: Expression behavior for all probes expressed over background in response to time, temperature, batch, and interactions among the factors. LFC indicates log fold change between treatments. Expression pattern denotes probes that were avove the threshold for significance (LFC&gt;1.5 and Q.value&lt;0.05), and indicates which treatement had higher expression levels.
DOI: 10.5061/dryad.v2n38/1
title: cont11a.phy 2

description: Nexus file for Agkistrodon contortrix for anonymous locus 11.
DOI: 10.5061/dryad.v2n38/2
title: cont51a.phy

description: Nexus file for Agkistrodon contortrix for anonymous locus 51.
DOI: 10.5061/dryad.v2n38/3
title: contaa.phy

description: Nexus file for Agkistrodon contortrix for anonymous locus a.
DOI: 10.5061/dryad.v2n38/4
title: contcytb.phy

description: Nexus file for Agkistrodon contortrix for Cytochrome b.
DOI: 10.5061/dryad.v2n38/5
title: contnt3a.phy

description: Nexus file for Agkistrodon contortrix for anonymous locus 3.
DOI: 10.5061/dryad.v2n38/6
title: contsptbn1.phy

description: Nexus file for Agkistrodon contortrix for sptbn1.
DOI: 10.5061/dryad.v2n38/7
title: piscanon11.nex 3

description: Nexus file for Agkistrodon piscivorus for anonymous locus 11.
DOI: 10.5061/dryad.v2n38/8
title: pisccytb1.nex 2

description: Nexus file for Agkistrodon piscivorus for Cytochrome b.
DOI: 10.5061/dryad.vq587/2
title: TADS_obo_file

description: Ontology OBO file version for ticks (Ixodidae) used during the matching process.
DOI: 10.5061/dryad.104t1/2
title: Goldeneye egg time in nest

description: Average time spent in the same nest by the eggs of host and parasites, before incubation start in the nest. Based on Åhlund (2005, Fig. 1). Parasite eggs laid after the last host egg (incubation start) are not included.
DOI: 10.5061/dryad.1518r/1
title: Bauch_etal_data_Telomeres-and-phenotypic-quality-ProcRSocB
DOI: 10.5061/dryad.16737/1
title: Acuclavella_28S_Richart&Hedin

description: 28S alignment.  7 Dyspnoi outgroup, 14 Acuclavella ingroup sequences.
DOI: 10.5061/dryad.16737/2
title: Acuclavella_COI_Richart&Hedin

description: 7 Dyspnoi outgroup, 18 Acuclavella ingroup sequences.
DOI: 10.5061/dryad.16737/8
title: COI_Richart&Hedin_infile.nex.con

description: COI consensus tree from Bayesian analysis.  7 Dyspnoi outgroup, 30 Acuclavella ingroup sequences.
DOI: 10.5061/dryad.16vm1/1
title: Data for 217 leopard individuals from central India, scored on 7 microsatellite loci

description: Species: Panthera pardus fusca. Study area: Central India. Dates collected: 2008-2010. Source of DNA: non-invasively collected scat(fecal) samples. Data: Scores of 217 individual leopards on 7 microsatellite markers, described in the ReadMe section. Format of Data: Genepop file.
DOI: 10.5061/dryad.1jb04/1
title: 20MAY2014 REPOSITORY BL_final PAIRED COMP_PROP

description: Mother and child data about whether bitter compounds are more or less bitter with added blockers such as sodium gluconate
DOI: 10.5061/dryad.1t0h0/1
title: Seebacher and Grigaltchik_data for PLoS ONE

description: Raw data used in this publication in an Excel file. The key to data columns is provided on the first page of the Excel spreadsheet.
DOI: 10.5061/dryad.2gd84/1
title: Appendix 1

description: Characters and character states used in the descriptions, with semantic phenotype annotation.
DOI: 10.5061/dryad.2qk35/3
title: Zosterae Tx embryo data sheets

description: All of the embryo genotypes for each males collected in Texas.
DOI: 10.5061/dryad.34jb6/1
title: SASP-CultEvolSongs

description: Sonograms of the songs included in this repository. Examples of five different song types (defined by the "middle" section of the song) are shown for six recording periods spanning the years from 1980 to 2011.
DOI: 10.5061/dryad.34jb6/2
title: 1980-2Ch

description: Example of a 1980 song with 2 "Ch" notes (.wav format, uncompressed, 16 bit, 44 kHz).
DOI: 10.5061/dryad.34jb6/3
title: 1982-Stutter

description: Example of a 1982 stutter song (.wav format, uncompressed, 16 bit, 44 kHz).
DOI: 10.5061/dryad.34jb6/9
title: 1988-DashCh

description: Example of a 1988 Dash + Ch song (.wav format, 16 bit, 44 kHz)
DOI: 10.5061/dryad.35h8v/4
title: Dubuis et al. - Source_Data_Files

description: Complete source data for Dubuis et al. contains two folders: 1. Folder "FC_Calibration" contains the source data used for calibration of the time-dependent furrow canal depth. It displays the chi_2 minimized furrow canal depth (delta_FC) for the 8 live imaged Drosophila embryos as function of time during n.c. 14 (see Materials and Methods). It also shows the mean furrow canal depth averaged over the 8 embryos (mean_delta_FC) and adjusted mean in fixed tissues (mean_delta_FC_fixed) that we used to estimate the age of the 163 fixed embryos. Column 1 contains the time in minutes after the onset of n.c. 14. Columns 2 to 9 contain the chi_2 minimized furrow canal depths (delta_FC_x, x being the embryo number) in  for the 8 live imaged embryos. NaN means that we couldn't detect the furrow canal at that particular time. Column 10 contains the mean furrow canal depth averaged over the 8 embryos (mean_delta_FC) measured in micrometers. Column 11 contains the the furrow canal depth, measured in micrometers, which we used to estimate the age of fixed embryos. It was obtained by a 5% shrinkage of the previous column (see Materials and Methods). 2. Folder "Images" contains the original images of 201 Drosophila embryos at blastoderm stage immunostained against the four main gap genes (Kni, Kr, Gt, Hb). For each embryo with provide 5 12-bit images, each corresponding to a different optical channel (see Materials and methods). Channel 0 -- rat @ Kni (488nm); Channel 1 -- bright field (delta_FC); Channel 2 -- guinea pig @ Gt (568nm); Channel 3 -- rabbit @ Kr (594nm); Channel 4 -- mouse @ Hb (647nm). Images were taken with a Leica 20x  HC PL APO NA 0.7 oil immersion objective, and with sequential excitation wavelengths of 488, 546, 594 and 633 nm. The bandwidth of the detection filters were set up as shown in Figure 1A to minimize fluorophore cross-talk while still allowing good detection in each optical channel. For each embryo, three high-resolution images (1024x1024 pixels, with 12 bits and at 100 Hz) were taken along the anterior-posterior axis (focused at the midsagittal plane) at 1.7  magnified zoom and averaged together. With these settings, the linear pixel dimension corresponds to 0.44 um.
DOI: 10.5061/dryad.388ds/1
title: Suppl_Material_Alignments_for_30_loci

description: Sequence alignments for all 30 loci are given as .phy format files. For intra-specific (Fig. 2a), inter-specific (Fig 2b) and inter-generic (Fig. 2c) comparison, representative taxa have been selected from these alignments. First three letters in an accession name indicate the species used, fourth and fifth letters show the country of collection according to the International Organization for Standardization (ISO), and the last two digits represent accession number.
DOI: 10.5061/dryad.39vb6/10
title: Beauvoit et al._tomato fruit sugar model_high affinity_47 dpa

description: COPASI file of kinetic model of 47 DPA-aged fruit parameterized with high affinity vacuolar carriers
DOI: 10.5061/dryad.3db81/1
title: Stigma_Data
DOI: 10.5061/dryad.3db81/3
title: Nectar_Removal
DOI: 10.5061/dryad.3db81/4
title: Nectar_Chem_Analysis
DOI: 10.5061/dryad.40gk7/1
title: DEE calculations

description: Excel spreadsheet shows raw ppm values from blood samples used for measurement of energy expenditure using doubly-labelled water and equations used to convert those ppm values into energy expenditure. Also shown are calculated PDBA (partial dynamic body acceleration) values relative to measured energy expenditure. The "ID" is the band number that can be cross-referenced with the activity/accelerationd data.
DOI: 10.5061/dryad.5m0m5/1
title: Network data
DOI: 10.5061/dryad.632p3/1
title: Tree census data

description: These data are yearly measurements of status, height and diameter on individual trees from the experimental plantation of the Sardinilla project. The Sardinilla project is a biodiversity experiment with tropical trees, that is a replacement series experiment with plots containing either 1, 3 or 6 species. The Sardinilla Project is part of Treedivnet (http://www.treedivnet.ugent.be) a global network of nine similar biodiversity tree plantations including boreal, temperate and tropical forest experiments. See: http://biology.mcgill.ca/faculty/potvin/sardinilla_obj.html. Data from years 2002 to 2006 are provided. Seedlings were planted in July 2001. Measurements were made late December (of the previous year indicated in the columns), in January or in February (of the year indicated in the columns). Metadata are included in a readme file and in a separate sheet in the xls file.
DOI: 10.5061/dryad.6tt66/1
title: DRYAD_Figure1

description: Data for Fig. 1: Sensitivities of the GRNs of WT and GA (T164-BC) cockroaches to various tastants.
DOI: 10.5061/dryad.6tt66/2
title: DRYAD_Figure2

description: Data for Fig. 2: Behavioral and electrophysiological responses to six tastants.
DOI: 10.5061/dryad.6tt66/3
title: DRYAD_Figure3

description: Data for Fig. 3: Glucose-aversion is elicited by stimulation of bitter-GRNs and inhibition of sugar-GRNs.
DOI: 10.5061/dryad.77077/3
title: ABCsimulation

description: Estimates of demographic/genetic parameters under three scenarios: ibd, cENM, dENM (see manuscript for description). 5000 closest simulations were retained in each scenario after 1 million runs. Logarithmic values of carrying capacities, migration rate, ancestral population size, and mutation rates were estimated from 6 PLSs (see the manuscript for description of PLS) converted from original 34 summary statistics.
DOI: 10.5061/dryad.7fj38/1
title: DryadData_Heredity_Bufo_altitude

description: Phenotypic variation (larval period, mass at Gosner stage 42 and growth rate) of populations located along an altitudinal garden. Phenotypic traits have been measured in a common garden experiment.
DOI: 10.5061/dryad.7h8n3/1
title: Table S1

description: Mean genotypic values for the 18 genotypes planted at the start of the experiment in 2007; annuality and phenology were estimated from the main experiment in 2007; additionally, annuality from an independent experiment in 2006, under divergent growing conditions, is shown (see Johnson et al. 2009a). Percent germination is from a separate experiment conducted 2008-2009, and insect attack (Mompha/fruit) is reported for 2007 and 2010 (when 2 genotypes were absent) from the main experiment.
DOI: 10.5061/dryad.8339m/3
title: Level-3_ItalySlovenia

description: Structure data file for level-3 analyis. C. arvensis- and U. dioica-associated populations of H. obsoletus from Italy and Slovenia
DOI: 10.5061/dryad.8339m/4
title: Level-4_non-GermanPops

description: Structure data file for level-4 analyis. All non-German C. arvensis- and U. dioica-associated populations of H. obsoletus
DOI: 10.5061/dryad.b451g/2
title: Supplementary material, S2

description: This video comprises the radiographs from each scan (i.e. the two-dimensional X-ray projection, rather than the digital visualization. Particularly apparent are the mid-gut and development of air sacs, as well as movement of the internal anatomy during each scan.
DOI: 10.5061/dryad.b922k/8
title: termite16S_Clean fas

description: After pre-processing, 475,980 reads are left, of which 203,223 are non-redundant, these reads are included in the termite16S_Clean.fas file
DOI: 10.5061/dryad.fd31n/3
title: BayeScan_DN

description: Data file for analysis of RAD-derived SNPs comparing the dune and nondune ecotypes of Helianthus petiolaris at Great Sand Dunes National Park and Preserve using BayeScan.
DOI: 10.5061/dryad.fd31n/4
title: Env_assoc_subpop_data

description: Environmental data used in tests of associations between SNPs and environments, controlling for coancestry. Locations are given in UTM eastings and northings. The vegetation cover data (percentages) are averages of four 1m square quadrats at each site, assessed in May 2009. Soil nutrient availability during the growing season was measured using ion exchange probes and the total absorption was scaled to the maximum burial time (123 days), such that in each case the unit of measurement was mg/10 cm2/123 days.
DOI: 10.5061/dryad.fd31n/5
title: Env_assoc_SNP_table

description: Helianthus petiolaris SNPs tested for associations with environmental variables. The sampling locations for individuals are given in Env_assoc_sample_key.txt.
DOI: 10.5061/dryad.gd93s/6
title: Silene nutans and otites cox1

description: Alignment of mitochondrial cox1 sequences
DOI: 10.5061/dryad.hf823/1
title: Implicit racial attitudes, emotional intensity, other-race faces, Chinese participants
DOI: 10.5061/dryad.k9m20/3
title: Wayqecha Peru Bird Community Vegetation Data

description: Vegetation characteristics within a 20m x 20m square centered on each of the 72, 0.8 ha bird survey points from a cloudforest–grassland ecotone at Wayqecha Biological Station, Peru. Please refer to publication main text for additional details on vegetation data collection methods. Data are in .csv format. Column headings: Site: 0.8 ha survey point names. X: X coordinate on survey grid. Y: Y coordinate on survey grid. Max.canopy.height: Maximum canopy height in meters, estimated by eye. Percentage.grass.cover: Estimated by eye. Percentage.shrub.cover: Estimated by eye. Percentage.tree.cover: Estimated by eye.
DOI: 10.5061/dryad.m466f/27
title: RUB262_distances

description: Pairwise genetic distances at locus RUB262 between the 579 samples analyzed.  These distances were calculated using the meandistance.matrix function in the R package "polysat" version 0.1, using the Bruvo.distance measure.  Each file contains a square matrix with row names and column names (sample names), as produced by the write.csv function in R version 2.11 under default parameters.
DOI: 10.5061/dryad.m466f/28
title: RUB262_genotypes

description: Microsatellite genotypes at locus RUB262. This is a tab-delimited text file in the format produced by Applied Biosystems GeneMapper software version 3.7.  Each sample*locus genotype is represented in one row.  The "Sample Name" column gives names of samples that directly correspond to those used in "species_chloroplast_latlong.csv".  The "Well" column indicates the location of the sample on the DNA dilution plates.  The "Marker" column indicates the microsatellite marker.  The "Panel" column indicates groups of markers that were run simultaneously on the ABI3100 capillary sequencer.  The "Dye" column indicates the fluorescent tag used to detect the PCR fragments: Y for NED, G for HEX, and B for FAM.  The "Allele" columns contain the names of all alleles detected for each genotype.  Cells are left blank if fewer alleles were detected than the number of columns.  A value of -9 for Allele 1 indicates missing data.  The "Height" columns indicate the height of the peak representing each allele, and the "Size" columns indicate the exact size of the DNA fragment as calculated by GeneMapper.  A value of "TRUE" in the "AE" column indicates that the genotype was manually edited in GeneMapper, although all genotypes were visually inspected.  The R package "polysat" can read these file directly, and will use the "Sample Name", "Marker", and "Allele" columns, and will ignore all other columns.
DOI: 10.5061/dryad.m466f/29
title: species_chloroplast_latlong

description: "species_chloroplast_latlong.csv" contains collection data and chloroplast genotypes for each sample in the hybridization study.**The "Well" column indicates the plate number and well where the sample was located on the DNA dilution plates.**The "Site" column contains a three-letter code for the collection site, which corresponds to a collection site description that can be found in the Supplementary Material fo the paper.**The "Individual" column contains the site code plus number used to uniquely identify each individual.**The "Initial Species Determination" column lists the species as it was determined either during collection or after preliminary analysis.**The "Species based on genetic data" column lists the final species determination.  Identification of R. vestitus and R. anglocandicans individuals is described in a manuscript that is in revision for the journal Biological Invasions.**The "ndh Allele" column gives the size of the PCR fragment produced by amplifying the ndhF chloroplast region (using primers and PCR conditions are described in the paper), while the "Peak Height" column gives the height of the peak detected on an ABI3100 capillary sequencer for this allele, and "Run" lists the identity of the run as produced by the data collection software.**The "trnK allele" column gives the result of a CAPS marker in the trnK region of the chloroplast genome: the "cut" allele has a HindIII site while the "uncut" allele does not. **"pch for R" contains the number of the symbol used to represent each individual in Principal Coordinate Analysis in R, based on the ndhF allele.**"color for R" contains the colors initially used to represent each individual in Principal Coordinates Analysis in R, based on the trnK allele and whether the individual is a member of the R. fruticosus agg. or not.  All "magenta" individuals were later changed to "red" so that the color would only represent the genetic results.**"LatOrder" contains a number for each population, in order of increasing latitude.**"Latitude" and "Longitude" contain decimal coordinates where the sample was collected, obtained using a Garmin GPSMAP 60CS in the WGS84 datum.**"Collection date" contains the date that leaf tissue was collected in the field, in YYYYMMDD format.**"Comment" contains any additional information, such as whether a pressed voucher was collected, whether the sample was excluded from analysis, or information about morphology or location.
DOI: 10.5061/dryad.n3m93/1
title: quorum

description: This is the computer program that was used to create the data in this paper. It is a quick BASIC program.
DOI: 10.5061/dryad.q9d6s/1
title: Structure Assignment and Microsatellite Scores

description: This file contains raw micro satellite scores and the Q value probability of assignment (mean of 10 runs in Structure) to each of the three identified clusters as described in the manuscript.
DOI: 10.5061/dryad.qn1n2/1
title: Sage-Grouse de novo assembly

description: De novo assembly of the Gunnison Sage-Grouse using CLC Genomics Workbench. Includes CLC assembly report.
DOI: 10.5061/dryad.qn1n2/2
title: Clark's Nutcracker de novo assembly

description: De novo assembly of the Clark's Nutcracker using CLC Genomics Workbench. Includes CLC assembly report.
DOI: 10.5061/dryad.qn1n2/3
title: Sage-Grouse to Chicken chromosome annotation

description: Chromsome annotation of the Sage-Grouse using the Chicken genome. Used 1x reference-guided assembly and blast, and assumed high synteny between species.
DOI: 10.5061/dryad.qn1n2/4
title: Clark's Nutcracker to Zebra Finch chromosome annotation

description: Chromosome annotation of the Clark's Nutcracker using the Zebra Finch genome. Used 1x reference-guided assembly and blast, and assumed high synteny between species.
DOI: 10.5061/dryad.sh85t/1
title: Prairie dog SNA data for upload

description: Contains information on individuals (body mass, behavior, group size, sex, age, betweenness centrality and degree centrality)
DOI: 10.5061/dryad.v2n38/10
title: piscsptbn1.nex 3

description: Nexus file for Agkistrodon piscivorus for sptbn1.
DOI: 10.5061/dryad.v2n38/11
title: piscvim56.nex 4

description: Nexus file for Agkistrodon piscivorus for Vimentin 5-6.
DOI: 10.5061/dryad.v2n38/12
title: piscwl.nex 3

description: Nexus file for Agkistrodon piscivorus for AHR.
DOI: 10.5061/dryad.v2n38/13
title: anon 11d outgroups

description: Nexus file for species tree estimates for anonymous locus 11.
DOI: 10.5061/dryad.v2n38/14
title: anon 51d outgroups

description: Nexus file for species tree estimates for anonymous locus 51.
DOI: 10.5061/dryad.v2n38/15
title: anon ad outgroup

description: Nexus file for species tree estimates for anonymous locus a.
DOI: 10.5061/dryad.v2n38/16
title: cytbd outgroups

description: Nexus file for species tree estimates for Cytochrome b.
DOI: 10.5061/dryad.v2n38/17
title: nav56d outgroups

description: Nexus file for species tree estimates for Nav5-6.
DOI: 10.5061/dryad.v2n38/9
title: piscnt3.nex 3

description: Nexus file for Agkistrodon piscivorus for NT3.
DOI: 10.5061/dryad.105c0/1
title: Hemocyanin Global Data set

description: Gene family data matrix with all paralogs and Bayesian consensus trees.
DOI: 10.5061/dryad.3053g/1
title: Galleria mellonella electrophysiology files
DOI: 10.5061/dryad.34jb6/10
title: 1988-DashShortNotes

description: Example of a 1988 Dash + short note song (.wav format, 16 bit, 44 kHz)
DOI: 10.5061/dryad.34jb6/11
title: 1989-SingleNote

description: Example of a 1989 single note (dash) song (.wav format, 16 bit, 44 kHz)
DOI: 10.5061/dryad.34jb6/12
title: 1993-2Ch

description: Example of a 1993 two Ch note song (.wav format, 16 bit, 44 kHz)
DOI: 10.5061/dryad.34jb6/13
title: 1993-Stutter

description: Example of a 1993 stutter song (.wav format, 16 bit, 44 kHz)
DOI: 10.5061/dryad.34jb6/14
title: 1993-DashCh

description: Example of a 1993 Dash + Ch song (.wav format, 16 bit, 44 kHz)
DOI: 10.5061/dryad.34jb6/15
title: 1993-DashShortNotes

description: Example of a 1993 Dash + short notes song (.wav format, 16 bit, 44 kHz)
DOI: 10.5061/dryad.34jb6/4
title: 1982-Dash+Ch

description: Example of a 1982 Dash + Ch song (.wav format, 16 bit, 44 kHz)