cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.k9tdcb
title: Occurrence Download

description: A dataset containing 652934 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bombycilla garrulus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 652934 records from 179 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108096-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wxrjys
title: Occurrence Download

description: A dataset containing 2875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Loxosceles reclusa Gertsch & Mulaik, 1940"
 ]
}

 The dataset includes 2875 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108119-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nnypgu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Citrus mangshanensis S.W.He & G.F.Liu)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108121-240626123714530/datasets/export for details.
DOI: 10.15468/dl.ftaf6s
title: Occurrence Download

description: A dataset containing 367 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Issue is one of (Zero coordinate, Coordinate out of range, Coordinate invalid, Coordinate rounded, Geodetic datum invalid, Geodetic datum assumed WGS84, Coordinate reprojected, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate accuracy invalid, Coordinate precision invalid, Coordinate uncertainty meters invalid, Coordinate precision/uncertainty mismatch, Footprint SRS invalid, Footprint WKT mismatch, Footprint WKT invalid, Country coordinate mismatch, Country mismatch, Country invalid, Country derived from coordinates, Continent coordinate mismatch, Continent country mismatch, Continent invalid, Continent derived from country, Continent derived from coordinates, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Recorded date mismatch, Recorded date invalid, Recorded date unlikely, Taxon match fuzzy, Taxon match higher rank, Taxon match aggregate, The scientific name ID was not used in backbone matching, The taxon concept ID was not used in backbone matching, The taxon ID was not used in backbone matching, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, The scientific name differs on the record from that found in the checklist, Taxon match none, The backbone match found using the taxon IDs differs from what would be found if using the scientific names , Depth not metric, Depth unlikely, Depth min max swapped, Depth non numeric, Elevation unlikely, Elevation min max swapped, Elevation not metric, Elevation non numeric, Modified date invalid, Modified date unlikely, Identified date unlikely, Identified date invalid, Basis of record invalid, Type status invalid, Multimedia date invalid, Multimedia URI invalid, References URI invalid, Error during interpretation, Individual count invalid, Individual count conflicts with occurrence status, Occurrence status unparsable, Occurrence status inferred from individual count, ccurrence status inferred from basis of record, Georeferenced date unlikely, Georeferenced date invalid, Ambiguous institution, Ambiguous collection, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch, Possibly on loan, Different owner institution)",
 "OccurrenceStatus is Present",
 "TaxonKey is Loxopterygium Hook.f."
 ]
}

 The dataset includes 367 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108122-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4zxkg
title: Occurrence Download

description: A dataset containing 1989 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blumeriella jaapii (Rehm) Arx",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 }
 ]
}

 The dataset includes 1989 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108120-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15482/usda.adc/26524420
title: Data from: Rotating perennial forages into annual wheat cropping systems: correlations between plant available soil and grain mineral concentrations

description: Correlations between plant available soil and grain mineral concentrations are often assumed, yet few studies examine these associations. Here, soil and wheat grain samples were analyzed from a semi-arid dryland cropping study in the northern Great Plains conducted between 2006 and 2011. Continuous spring wheat (fertilized) (Triticum aestivum L; CSW) was compared with wheat following 5 yr of perennial forages of either alfalfa (Medicago sativa L.), intermediate wheatgrass (fertilized) (Thinopyrum intermedium (Host) Barkw. & D.R. Dewey sbsp. Intermedium; IWG), or an alfalfa/intermediate wheatgrass mixture (fertilized; MIX). Wheat performance (yield, 1,000 kernel weight [TKW], and crude protein [CP] concentration), and associations between 11 plant available soil mineral concentrations and 11 wheat grain mineral concentrations were assessed. Wheat following alfalfa had greater yield than all treatments, greater TKW than CSW, greater CP than IWG and CSW, but lower grain Zn concentration than IWG (p ≤ .05). Wheat grain following IWG had greater Fe and Mn concentration than MIX, greater Mg concentration than CSW, and lower S concentration than all treatments (p &lt; .05). Multivariate correlation analysis showed positive correlations between plant available soil and grain B, Mg, Mn, and S concentrations (p ≤ .02), while plant available soil and grain Zn and Ca concentrations showed negative associations (p ≤ .05). Rotating perennial forage phases into wheat cropping systems increased wheat yield and CP but reduced certain plant available soil minerals. Although rotating perennials into annual cropping systems can benefit some soil quality parameters it may also diminish plant available soil minerals, influencing fertility recommendations.
DOI: 10.15482/usda.adc/26524420.v1
title: Data from: Rotating perennial forages into annual wheat cropping systems: correlations between plant available soil and grain mineral concentrations

description: Correlations between plant available soil and grain mineral concentrations are often assumed, yet few studies examine these associations. Here, soil and wheat grain samples were analyzed from a semi-arid dryland cropping study in the northern Great Plains conducted between 2006 and 2011. Continuous spring wheat (fertilized) (Triticum aestivum L; CSW) was compared with wheat following 5 yr of perennial forages of either alfalfa (Medicago sativa L.), intermediate wheatgrass (fertilized) (Thinopyrum intermedium (Host) Barkw. & D.R. Dewey sbsp. Intermedium; IWG), or an alfalfa/intermediate wheatgrass mixture (fertilized; MIX). Wheat performance (yield, 1,000 kernel weight [TKW], and crude protein [CP] concentration), and associations between 11 plant available soil mineral concentrations and 11 wheat grain mineral concentrations were assessed. Wheat following alfalfa had greater yield than all treatments, greater TKW than CSW, greater CP than IWG and CSW, but lower grain Zn concentration than IWG (p ≤ .05). Wheat grain following IWG had greater Fe and Mn concentration than MIX, greater Mg concentration than CSW, and lower S concentration than all treatments (p &lt; .05). Multivariate correlation analysis showed positive correlations between plant available soil and grain B, Mg, Mn, and S concentrations (p ≤ .02), while plant available soil and grain Zn and Ca concentrations showed negative associations (p ≤ .05). Rotating perennial forage phases into wheat cropping systems increased wheat yield and CP but reduced certain plant available soil minerals. Although rotating perennials into annual cropping systems can benefit some soil quality parameters it may also diminish plant available soil minerals, influencing fertility recommendations.
DOI: 10.5281/zenodo.13379803
title: Climate conundrum: a wet or dry European and Northern African climate during the middle Miocene

description: Data

Supporting information for the manuscript titled "Climate conundrum: a wet or dry European and Northern African climate during the middle Miocene"

Dataset 1: Miocene_EuropeManuscript_Acostaetal2024-AnnualMean.nc

The dataset contains climate variables: surface temperature (deg C), total precipitation (mm), surface evaporation (mm), P-E (mm), and integrated moisture flux (Kg m s-1). The experiment array is ordered as Mio400.NAZM, Mio400, Mio840.

Dataset 2: Reconstruction_MasterDS.xlsx

The dataset contains proxy compilations: MioMIP1 sea surface temperature, MioMIP1 paleobotanical mean annual precipitation and surface temperature, middle Miocene herpetological mean annual precipitation, and middle Miocene CReST mean annual precipitation and surface temperature. 

Software

The Jupyter Notebook used to create model-data comparison and integrated moisture transport figures are found in GitHub repository (https://github.com/rpacosta07/Acostaetal2024_Climate_Conundrum).
DOI: 10.5281/zenodo.13379804
title: Climate conundrum: a wet or dry European and Northern African climate during the middle Miocene

description: Data

Supporting information for the manuscript titled "Climate conundrum: a wet or dry European and Northern African climate during the middle Miocene"

Dataset 1: Miocene_EuropeManuscript_Acostaetal2024-AnnualMean.nc

The dataset contains climate variables: surface temperature (deg C), total precipitation (mm), surface evaporation (mm), P-E (mm), and integrated moisture flux (Kg m s-1). The experiment array is ordered as Mio400.NAZM, Mio400, Mio840.

Dataset 2: Reconstruction_MasterDS.xlsx

The dataset contains proxy compilations: MioMIP1 sea surface temperature, MioMIP1 paleobotanical mean annual precipitation and surface temperature, middle Miocene herpetological mean annual precipitation, and middle Miocene CReST mean annual precipitation and surface temperature. 

Software

The Jupyter Notebook used to create model-data comparison and integrated moisture transport figures are found in GitHub repository (https://github.com/rpacosta07/Acostaetal2024_Climate_Conundrum).
DOI: 10.5281/zenodo.13524475
title: Climate conundrum: a wet or dry European and Northern African climate during the middle Miocene

description: Data

Supporting information for the manuscript titled "Climate conundrum: a wet or dry European and Northern African climate during the middle Miocene"

Dataset 1: Miocene_EuropeManuscript_Acostaetal2024-AnnualMean.nc

The dataset contains climate variables: surface temperature (deg C), total precipitation (mm), surface evaporation (mm), P-E (mm), and integrated moisture flux (Kg m s-1). The experiment array is ordered as Mio400.NAZM, Mio400, Mio840.

Dataset 2: Reconstruction_MasterDS.xlsx

The dataset contains proxy compilations: MioMIP1 sea surface temperature, MioMIP1 paleobotanical mean annual precipitation and surface temperature, middle Miocene herpetological mean annual precipitation, and middle Miocene CReST mean annual precipitation and surface temperature. 

Software

The Jupyter Notebook used to create model-data comparison and integrated moisture transport figures are found in GitHub repository (https://github.com/rpacosta07/Acostaetal2024_Climate_Conundrum).
DOI: 10.5281/zenodo.10655473
title: Sex chromosomes and hormones independently influence healthy brain development but act similarly after cranial radiation

description: Description

Biological sex influences prevalence of developmental disorders through sex hormones and sex chromosomes. However, our understanding of their impacts in neurodevelopment and response to injury remains limited. In this project, we use high resolution magnetic resonance imaging (MRI) to investigate the four core genotype mouse model (FCG) that separates the influences of sex hormones and sex chromosomes during normal brain development and after cranial radiation therapy. 

Sex differences are attributed to either sex hormones or sex chromosomes. This can be distinguished by the FCG model which decouples the sex determining region (SRY) from the Y chromosome by moving SRY onto an autosome. This gives us four core sex genotypes: XX NULL, XY NULL, XX SRY, and XY SRY.

This dataset represents the most comprehensive mouse brain imaging study employing the FCG model to date with 5 timepoints (P14, P23, P42, P63, P98), Ccl2 wildtype (+/+) and knockouts (-/-), irradiation (7Gy) and sham (0Gy) mice. All in all, a total of 1071 images! The results presented here is published in PNAS.

In vivo MRI scans were obtained using a 7-T MRI scanner (Bruker BioSpin, Ettlingen, Germany) equipped with four cryocoils for simultaneous imaging of four mice. The scans were performed with the following settings: T1-weighted, 3D-gradient echo sequence, 75μm isotropic resolution, TR=26ms, TE=8.25ms, flip angle=26°, field of view=25×22×22mm, and matrix size=334×294×294.

All structural MR images are stored in images.tar.gz. Images were segmented and registered using an automated pipeline which are stored in labels.tar.gz. The consensus average and labels are final_average.mnc and final_labels.mnc, respectively. Extracted structure volumes alongside the metadata are included in df_micevolumes.csv. Structural MRIs are in MINC format and the readme.txt provides further information on this dataset. 

The authors express their sincere gratitude for the research funding recieved from the Canadian Institutes of Health Research (158622, 168037) and the Ontario Institute for Cancer Research (IA-024) with funding from the Government of Ontario and Restracomp from the SIckKids Research Training Centre.

Publication: https://www.pnas.org/doi/10.1073/pnas.2404042121

Code/Software 

MINChttps://www.bic.mni.mcgill.ca/ServicesSoftware/MINC

RMINChttps://github.com/Mouse-Imaging-Centre/RMINC

PydPiperhttps://github.com/Mouse-Imaging-Centre/pydpiper/tree/v2.0.19.1
DOI: 10.15468/dl.vkkprw
title: Occurrence Download

description: A dataset containing 1243 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Citrus maxima (Burm.) Merr.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1243 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108125-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6dzfp
title: Occurrence Download

description: A dataset containing 14021 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "OccurrenceStatus is Present",
 "TaxonKey is Crotalus atrox Baird & Girard, 1853"
 ]
}

 The dataset includes 14021 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108124-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pvrcpp
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Discula destructiva Redlin",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 }
 ]
}

 The dataset includes 124 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108126-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uvpx24
title: Occurrence Download

description: A dataset containing 885 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Citrus medica L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 885 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108127-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tdkt7z
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Corallus batesii (Gray, 1860)"
 ]
}

 The dataset includes 98 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108130-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mfb4ya
title: Occurrence Download

description: A dataset containing 252 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erysiphe australiana (McAlpine) U.Braun & S.Takam.",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 }
 ]
}

 The dataset includes 252 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108131-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4q6d7w
title: Occurrence Download

description: A dataset listing the 163 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-59.88711 -14.58767,-57.75729 -14.58078,-57.68961 -14.34611,-57.65585 -12.79176,-59.90626 -12.82804,-59.88711 -14.58767))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Characiformes"
 ]
}

 The dataset's 163 records were derived from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108109-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.amm36e
title: Occurrence Download

description: A dataset containing 21911 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Issue is one of (Zero coordinate, Coordinate out of range, Coordinate invalid, Coordinate rounded, Geodetic datum invalid, Geodetic datum assumed WGS84, Coordinate reprojected, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate accuracy invalid, Coordinate precision invalid, Coordinate uncertainty meters invalid, Coordinate precision/uncertainty mismatch, Footprint SRS invalid, Footprint WKT mismatch, Footprint WKT invalid, Country coordinate mismatch, Country mismatch, Country invalid, Country derived from coordinates, Continent coordinate mismatch, Continent country mismatch, Continent invalid, Continent derived from country, Continent derived from coordinates, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Recorded date mismatch, Recorded date invalid, Recorded date unlikely, Taxon match fuzzy, Taxon match higher rank, Taxon match aggregate, The scientific name ID was not used in backbone matching, The taxon concept ID was not used in backbone matching, The taxon ID was not used in backbone matching, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, The scientific name differs on the record from that found in the checklist, Taxon match none, The backbone match found using the taxon IDs differs from what would be found if using the scientific names , Depth not metric, Depth unlikely, Depth min max swapped, Depth non numeric, Elevation unlikely, Elevation min max swapped, Elevation not metric, Elevation non numeric, Modified date invalid, Modified date unlikely, Identified date unlikely, Identified date invalid, Basis of record invalid, Type status invalid, Multimedia date invalid, Multimedia URI invalid, References URI invalid, Error during interpretation, Individual count invalid, Individual count conflicts with occurrence status, Occurrence status unparsable, Occurrence status inferred from individual count, ccurrence status inferred from basis of record, Georeferenced date unlikely, Georeferenced date invalid, Ambiguous institution, Ambiguous collection, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch, Possibly on loan, Different owner institution)",
 "OccurrenceStatus is Present",
 "TaxonKey is Matayba Aubl."
 ]
}

 The dataset includes 21911 records from 363 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108129-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqcp5h
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Citrus ×polytrifolia Govaerts)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108132-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jqxyam
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erysiphe carpinicola (Hara) U.Braun & S.Takam.",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 }
 ]
}

 The dataset includes 37 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108133-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qn6vva
title: Occurrence Download

description: A dataset containing 1314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Citrus reticulata Blanco)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1314 records from 167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108134-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.