cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gsuqhs
title: Occurrence Download

description: A dataset containing 211 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (TWN, TWN.3.1_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pyrops watanabei (Matsumura, 1913)"
 ]
}

 The dataset includes 211 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001651-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eb6wmb
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Albizia julibrissin Durazz.",
 "Country is Myanmar"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007351-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yezrrh
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Albizia julibrissin Durazz.",
 "Country is Korea (Democratic People’s Republic of)"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007353-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3hdjrd
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Albizia julibrissin Durazz.",
 "Country is Nepal"
 ]
}

 The dataset includes 72 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007352-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48472/datapb/fjy0oy
title: Biodiversidade de escorpiões (Arachnida, Scorpiones) da Paraíba, Brasil

description: O presente dataset contém 817 registros de escorpiões da Paraíba de fontes variadas, mas principalmente de coleções, como UFPI, UFPB e Instituto Butantan. Ela representa virtualmente todos os registros conhecidos de escorpiões no estado, com ocorrências em ecossistemas variados. Muitos destes registros são de espécies de importância médica por grande número de acidentes causados em toda a Paraíba.
DOI: 10.5281/zenodo.15557650
title: Data for: Helical Growth of Twining Common Bean is Associated with Longitudinal, Not Skewed, Microtubule Patterning

description: These are the data used to generate the figures associated with the paper: Helical Growth of Twining Common Bean is Associated with Longitudinal, Not Skewed, Microtubule Patterning.

 

All associated scripts can be found here: https://github.com/angelique-acevedo/Microtubule-Twining-Analysis
DOI: 10.15468/dl.3feq2z
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opisthoproctus soleatus Vaillant, 1888",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((26.1447 -34.2546,26.6413 -34.1504,17.9648 -34.1504,17.9648 -34.5378,18.3444 -34.8391,18.8711 -34.8843,19.4851 -35.2658,19.9376 -35.3352,20.7057 -34.9616,21.9281 -34.8692,22.6401 -34.5158,23.3842 -34.6063,23.712 -34.499,24.8223 -34.7143,25.2443 -34.5061,25.7729 -34.5304,26.1447 -34.2546))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011486-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15552856
title: Replication package for 'Revisiting Fault Localization Using Edge Spectra'

description: Replication package for the paper titled Revisiting Fault Localization Using Edge Spectra, to be submitted to ASE 2025.

This package contains the rankings and results of statement- and DUA-level fault localization on single- and multi-fault Defects4J, as well as the scripts to replicate the output.
DOI: 10.5281/zenodo.15552857
title: Replication package for 'Revisiting Fault Localization Using Edge Spectra'

description: Replication package for the paper titled Revisiting Fault Localization Using Edge Spectra, to be submitted to ASE 2025.

This package contains the rankings and results of statement- and DUA-level fault localization on single- and multi-fault Defects4J, as well as the scripts to replicate the output.
DOI: 10.15468/dl.37hpzw
title: Occurrence Download

description: A dataset containing 895516 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'US'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence."year" &gt;= 2008 AND occurrence."year" &lt;= 2025)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 895516 records were derived from 2388 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011468-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9euhfe
title: Occurrence Download

description: A dataset containing 27423 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Pandanus Parkinson"
 ]
}

 The dataset includes 27423 records from 252 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009857-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4varp
title: Occurrence Download

description: A dataset containing 2489 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NU: KwaZulu-Natal Invasive Alien Species (1821-2011)"
 ]
}

 The dataset includes 2489 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009858-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.hmgqnk9hx
title: Contrasting environmental drivers of genetic of genetic and phenotypic divergence in an Andean poison frog

description: Phenotypic and genetic divergence are shaped by the homogenizing effects
 of gene flow and the differentiating processes of genetic drift and local
 adaptation. Herein, we examined the mechanisms that underlie phenotypic
 (size and color) and genetic divergence in 35 populations (535
 individuals) of the poison frog Epipedobates anthonyi along four
 elevational gradients (0–1800 m asl) in the Ecuadorian Andes. We found
 phenotypic divergence in size and color despite relatively low genetic
 divergence at neutral microsatellite loci. Genetic and phenotypic
 divergence were both explained by landscape resistance between sites
 (isolation-by-resistance, IBR), likely due to a cold and dry mountain
 ridge between the northern and southern elevational transects that limits
 dispersal and separates two color morphs. Moreover, environmental
 differences among sites also explained genetic and phenotypic divergence,
 suggesting isolation-by-environment (IBE). When northern and southern
 transects were analyzed separately, genetic divergence was predicted
 either by distance (isolation-by-distance, IBD; northern) or environmental
 resistance between sites (IBR; southern). In contrast, phenotypic
 divergence was primarily explained by environmental differences among
 sites, supporting the IBE hypothesis. These results indicate that although
 distance and geographic barriers are important drivers of population
 divergence, environmental variation has a two-fold effect on population
 divergence. On the one hand, landscape resistance between sites reduces
 gene flow (IBR), while on the other hand, environmental differences among
 sites exert divergent selective pressures on phenotypic traits (IBE). Our
 work highlights the importance of studying both genetic and phenotypic
 divergence to better understand the processes of population divergence and
 speciation along ecological gradients.
DOI: 10.5061/dryad.pvmcvdnmx
title: Data from: The Sulawesi Thrush (Cataponera turdoides; Aves: Passeriformes) belongs to the genus Turdus

description: The Asian and Australo-Papuan faunas meet and intermix across the islands
 of Wallacea. Untangling the origins and relationships of the species
 inhabiting these archipelagos is an ongoing project that has lasted for
 well over a century. In recent years, molecular phylogenetic studies have
 made considerable progress in clarifying the affinities of enigmatic
 Wallacean taxa; but taxonomic riddles remain, even in groups as well
 studied as birds. Such is the case with Sulawesi Thrush Cataponera
 turdoides, a scarce and elusive montane songbird whose taxonomic placement
 has remained controversial since its description. To determine the
 evolutionary relationships of this monotypic genus, we obtained a museum
 specimen and employed whole-genome resequencing to generate a multi-locus
 dataset. Phylogenetic analyses were performed using UCEs, and individual
 mitochondrial and nuclear genes. We show that Cataponera is a true thrush
 of the large and geographically widespread genus Turdus. It belongs to a
 clade predominantly composed of migratory Palearctic species, but has no
 close relatives within that group. Sulawesi Thrush is one of only two
 members of the genus Turdus known to have crossed Wallace’s Line to form
 resident populations.
description: Ultraconserved element (UCE) alignment.
DOI: 10.5061/dryad.1rn8pk0vj
title: Data from: Beyond BACI: offsetting carcass numbers with flight intensity to improve risk assessments of bird collisions with power lines

description: Here, the count data underlying the paper "Beyond BACI: offsetting
 carcass numbers with flight intensity to improve risk assessments of bird
 collisions with power lines" (to be published in "Ecology and
 Evolution", Mercker&Jödicke, 2021) are given. In particular,
 we provide flight intensity data for Starling, Geese Gulls, and Doves
 (i.e., data from those analyzed bird species(complexes) where statistical
 analyses indicate a violation of the BACI assumption of synchronicity (p
 &lt; 0.1)), as well as Geese flight and carcass data (the
 latter structurally underlying the simulation study presented in our
 work). We kindly thank the TenneT TSO GmbH for providing carcass and bird
 flight data.
description: Study area The analyses presented in this work
 strongly rely on the flight and carcass data collected in the wire-marking
 effectiveness study as presented in Jödicke et al (2018) (c.f., below).
 The corresponding study area is located near the Elbe river close to
 Hamburg, Germany. Bird flight data
 Bird flight movements were recorded weekly within one 300 m wide
 corridor on both sides of three different counting points (two within the
 control site and one within the impact site) with a usual counting
 duration of 4 hours per count and counting point. All detected birds
 crossing the lines below, flying through the lines, or crossing them
 above, were recorded. In each season (before vs. after), 70 counts were
 carried out. A total of 128 species including &gt; 450,000 individuals
 were observed within 1,644 observation hours. More details are given
 in K. Jödicke, H. Lemke, M. Mercker (2018):
 "Wirksamkeit von Vogelschutzmarkierungen an Erdseilen von
 Höchstspannungsfreileitungen". Naturschutz und Lanschaftsplanung 50
 (8), p 286-294. Carcass data
 Collision victims were recorded by searching six defined parallel
 transects of 20 m width (i.e., a total width of 120 m has been searched)
 below and next to the power line. The total length of the search distance
 was 4.1 km, resulting in a total transect length of 24.6 km per carcass
 search. Searches were carried out every 2 days during the main migration
 and resting periods (February 15 to April 30 and August 15 to October 31),
 and every 5 days at other times. A total of 222 carcass searches were
 carried out over two complete seasons (from February 2014 to April 2016).
 A total of 637 collision victims were found. More details are given
 in K. Jödicke, H. Lemke, M. Mercker (2018):
 "Wirksamkeit von Vogelschutzmarkierungen an Erdseilen von
 Höchstspannungsfreileitungen". Naturschutz und Lanschaftsplanung 50
 (8), p 286-294.
description: All explanantions with respect to variable names and meanings are
 given in the corresponding paper "Beyond BACI: offsetting carcass
 numbers with flight intensity to improve risk assessments of bird
 collisions with power lines" (to be published in "Ecology and Evolution").
DOI: 10.5061/dryad.pk0p2ngpn
title: The influence of an enriched environment in enhancing recognition memory in zebrafish (Danio rerio)

description: Environmental enrichment is used to increase social and physical
 stimulation for animals in captivity which can lead to enhanced cognition.
 Fundamental to the positive effect enrichment has on the brain is that it
 provides opportunities for captive animals to recognize and discriminate
 between different stimuli in the environment. In the wild, being able to
 discriminate between novel or familiar stimuli has implications for
 survival, for example finding food, hiding from predators, or even
 choosing a mate. The novel object recognition (NOR) test is a cognitive
 task that is used extensively in the rodent literature to assess object
 recognition and memory, where the amount of time an animal spends
 exploring a novel vs. familiar object is quantified. Enrichment has been
 shown to enhance object recognition in rodents. More recently, the use of
 the NOR test has been applied to another animal model, zebrafish (Danio
 rerio), however, the effects of enrichment have not yet been explored. In
 the current study we looked at the effects of enrichment on object
 recognition in zebrafish using the NOR test. Adult zebrafish were housed
 in either enriched conditions (gravel substrate, plastic plants, shelter,
 heater and a filter) or plain conditions (heater and filter only) for
 6months before behavioral NOR tests were conducted. Enriched fish showed a
 preference for a novel object over a familiar one at a distance but did
 not show a preference during close inspection. Control fish did not show a
 preference at either distance. Our results suggest that enrichment can
 enhance zebrafish ability to discriminate between novel and familiar
 objects, but distance from the object may be an important factor. Future
 research is needed to determine whether any enhancements in object
 recognition are a result of an increase in sensory stimulation from being
 reared with enrichment, or whether it is due to a reduction in stress
 reactivity.
DOI: 10.5061/dryad.x3ffbg7kx
title: Morphological trait matching in plant–Hymenoptera and plant–Diptera mutualisms across an elevational gradient

description: Morphological trait-matching and species abundance are thought to be the
 main factors affecting the frequency and strength of mutualistic
 interactions. However, the relative importance of trait-matching and
 species abundance in shaping species interactions across environmental
 gradients remains poorly understood, especially for plant–insect
 mutualisms involving generalist species. Here, we characterised variation
 in species and trait composition and the relative importance of
 trait-matching and species abundance in shaping plant–Hymenoptera and
 plant–Diptera mutualisms in four meadows across an elevational gradient
 (2,725–3,910 m) in Yulong Snow Mountain, Southwest China. We also
 evaluated the effects of morphological traits of flower visitors and plant
 composition on their foraging specialisation (d’ and normalised degree).
 There was a high degree of dissimilarity in the composition of Hymenoptera
 and Diptera visitors and their visited plants between communities. This
 variation was mainly driven by the spatial replacement of species. Both
 for plant–Hymenoptera and plant–Diptera networks, trait-matching between
 nectar tube depth and proboscis length was a stronger predictor of the
 interactions between temporally co-occurring plants and flower visitors
 than species abundance. Fourth-corner analyses revealed statistically
 significant trait-matching between nectar tube depth and proboscis length
 in plant–Hymenoptera networks at all sites, suggesting that Hymenoptera
 consistently foraged on plant species with nectar tube depths matching
 their proboscis lengths. By contrast, significant trait-matching in
 plant–Diptera networks was only observed at the two lower elevation sites.
 The species-level specialisation d’ of flower visitors increased
 significantly as the proboscis length and the difference in nectar tube
 depth between the plant community and the plants visited by flower
 visitors increased. Our results highlight that the importance of
 trait-matching in shaping pairwise interactions and niche partitioning
 depends on the specific features (e.g. species composition and trait
 availability) of the plant-pollinator system. For specialised
 plant-Hymenoptera systems, trait-matching is an important determinant of
 species interactions, whereas for generalist plant-Diptera systems,
 trait-matching is relatively unimportant.
description: Data were collected at four
 sites along an elevational gradient in Yulong Snow Mountain, Southwest
 China.
description: This data package contains
 data from the publication: Yan-Hui Zhao, Amparo Lázaro, Hai-Dong Li,
 Zhi-Bin Tao, Huan Liang, Wei Zhou, Zong-Xin Ren, Kun Xu, De-Zhu Li, Hong
 Wang (2021) Morphological trait matching in plant–Hymenoptera and
 plant–Diptera mutualisms across an elevational gradient. Journal of Animal
 Ecology. Details about the content of the package can be found in the
 README.txt file.
DOI: 10.25349/d9vg85
title: The chronic wound virome: phage diversity and associations with wounds and healing outcomes

description: Two leading impediments to chronic wound healing are polymicrobial
 infection and biofilm formation. Recent studies have characterized the
 bacterial fraction of these microbiomes and have begun to elucidate
 compositional correlations to healing outcomes. However, the factors that
 drive compositional shifts are still being uncovered. The virome may play
 an important role in shaping bacterial community structure and function.
 Previous work on the skin virome determined that it was dominated by
 bacteriophages, viruses that infect bacteria. To characterize the virome,
 we enrolled 20 chronic wound patients presenting at an outpatient wound
 care clinic in a microbiome survey, collecting swab samples from healthy
 skin and chronic wounds (diabetic, venous, arterial, or pressure) before
 and after a single, sharp debridement procedure. We investigated the
 virome using a virus-like particle enrichment procedure, shotgun
 metagenomic sequencing, and a k-mer-based, reference-dependent taxonomic
 classification method. Taxonomic composition, diversity, and associations
 with covariates are presented. We find that the wound virome is highly
 diverse, with many phages targeting known pathogens, and may influence
 bacterial community composition and functionality in ways that impact
 healing outcomes.