cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/pcra-c14-55576
title: Redemption tidings, vol. 36, nos. 1-52, 1 Jan. - 23 Dec. 1960

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.remgu7
title: Occurrence Download

description: A dataset containing 1264 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (South America, North America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Polybia belemensis Richards, 1970"
 ]
}

 The dataset includes 1264 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092607-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kwpst8
title: Occurrence Download

description: A dataset containing 1126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Panax quinquefolius L."
 ]
}

 The dataset includes 1126 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0359056-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-55444
title: Redemption tidings, vol. 36, nos. 1-52, 1 Jan. - 23 Dec. 1960

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.pjs7jm
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Patis obtusa (Stapf ex Oliv.) Romasch., P.M.Peterson & Soreng"
 ]
}

 The dataset includes 165 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081027-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.er6nci
title: Occurrence Download

description: A dataset containing 1219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-119.26758 33.57422,-115.75195 23.20313,-79.36523 3.51563,-76.02539 6.85547,-73.56445 12.30469,-90.9668 29.00391,-119.26758 33.57422))",
 "HasCoordinate is true",
 "TaxonKey is Panthera onca (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1219 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006467-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-55309
title: Redemption tidings, vol. 36, nos. 1-52, 1 Jan. - 23 Dec. 1960

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.56uaz5
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Protoparmelia hypotremella Herk et al.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 249 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0250397-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rgegen
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polymnia aspera Mart. ex DC."
 ]
}

 The dataset includes 9 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092625-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swnh36
title: Occurrence Download

description: A dataset containing 1708 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "Geometry POLYGON ((6.52388859 0.01833333, 6.51861095 0.01833333, 6.51444435 0.02111111, 6.50749969 0.04166666, 6.4658327 0.1930555, 6.4644442 0.1986111, 6.4672222 0.2597222, 6.490555 0.305000, 6.4930553 0.3088888, 6.5336103 0.3438889, 6.6177769 0.4036111, 6.6549997 0.4091666, 6.6616659 0.4091666, 6.6666660 0.4083333, 6.6877775 0.4022222, 6.716666 0.377500, 6.7513885 0.3302777, 6.7666664 0.2905555, 6.7658329 0.2844444, 6.7555552 0.2397222, 6.7527771 0.2288889, 6.7502775 0.2247222, 6.7386103 0.2088889, 6.6611109 0.1041667, 6.6577768 0.1005555, 6.56166649 0.02722222, 6.52388859 0.01833333))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 1708 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042508-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-55509
title: Redemption tidings, vol. 36, nos. 1-52, 1 Jan. - 23 Dec. 1960

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.25549/pcra-c14-54991
title: Redemption tidings, vol. 36, nos. 1-52, 1 Jan. - 23 Dec. 1960

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.ca4qxe
title: Occurrence Download

description: A dataset containing 459 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudodiaptomus marinus Sato, 1913"
 ]
}

 The dataset includes 459 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0384096-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k43cmn
title: Occurrence Download

description: A dataset containing 1452 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Piptatheropsis micrantha (Trin. & Rupr.) Romasch., P.M.Peterson & Soreng"
 ]
}

 The dataset includes 1452 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081031-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.iytr1z
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-46.46118 -23.9461,-45.16479 -24.24696,-44.79126 -23.88584,-43.75854 -23.34226,-42.30835 -23.34226,-41.47339 -22.81669,-40.92407 -22.20775,-40.85815 -21.67785,-40.77026 -21.14599,-41.07788 -21.064,-41.73706 -21.28937,-42.39624 -21.0845,-43.75854 -21.37124,-44.50562 -21.92266,-45.62622 -22.39071,-46.37329 -22.85719,-46.46118 -23.9461))",
 "TaxonKey is Pteroglossus aracari (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 127 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006493-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-55477
title: Redemption tidings, vol. 36, nos. 1-52, 1 Jan. - 23 Dec. 1960

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.j79rxj
title: Occurrence Download

description: A dataset containing 1001 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-123.63702 43.52875,-122.74814 43.52875,-122.74814 45.57948,-123.63702 45.57948,-123.63702 43.52875))",
 "TaxonKey is Quercus garryana Douglas ex Hook."
 ]
}

 The dataset includes 1001 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026137-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7rhhr
title: Occurrence Download

description: A dataset containing 1188 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-46.51611 -23.92601,-42.95654 -24.36711,-40.979 -22.43134,-40.49561 -20.55051,-41.63818 -20.01465,-46.56006 -22.26876,-46.51611 -23.92601))",
 "TaxonKey is Ramphastos toco P.L.S.Müller, 1776",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1188 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006477-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-55511
title: Redemption tidings, vol. 36, nos. 1-52, 1 Jan. - 23 Dec. 1960

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.9uk5u5
title: Occurrence Download

description: A dataset containing 1624 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Falco severus Horsfield, 1821"
 ]
}

 The dataset includes 1624 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0436476-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-54518
title: Redemption tidings, vol. 35, nos. 1-46, 2 Jan. - 25 Dec. 1959

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.2pq8wv
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phaeocercospora juniperina (Georgescu & Badea) U.Braun, C.Nakash., Videira & Crous",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada"
 ]
 },
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 }
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101060-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zf1qyq
title: Occurrence Download

description: A dataset containing 440 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chionochloa macra Zotov"
 ]
}

 The dataset includes 440 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010979-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-54530
title: Redemption tidings, vol. 35, nos. 1-46, 2 Jan. - 25 Dec. 1959

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.6t8zqn
title: Occurrence Download

description: A dataset containing 4944551 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4944551 records from 2276 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0359061-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.14478327.v1
title: Archivo Suplementario S1

description: En este archivo se encuentra la información correspondiente a los genes diferencialmente expresados de Drosophila melanogaster en interacción con Spiroplasma y avispas parasitoides correspondiente al tiempo 1
DOI: 10.6084/m9.figshare.14478327
title: Archivo Suplementario S1

description: En este archivo se encuentra la información correspondiente a los genes diferencialmente expresados de Drosophila melanogaster en interacción con Spiroplasma y avispas parasitoides correspondiente al tiempo 1
DOI: 10.25345/c52b8m
title: MassIVE MSV000087295 - NIST Metabolites in Human Plasma - LC-IM-MS All Ions
title: These data and results are supplementary material for the manuscript: A Preprocessing Tool for Generating Ion Mobility-Mass Spectrometry Files in Instrument Format with Enhanced Data Quality and Enabling Efficient Computational Workflows
DOI: 10.6084/m9.figshare.14478333
title: Archivo suplementario S2

description: En este archivo se encuentra la información correspondiente a los genes diferencialmente expresados de <i>Drosophila melanogaster</i> en interacción con Spiroplasma y avispas parasitoides, correspondiente al tiempo 2 post parasitismo<br>
DOI: 10.6084/m9.figshare.14478333.v1
title: Archivo suplementario S1

description: En este archivo se encuentra la información correspondiente a los genes diferencialmente expresados de <i>Drosophila melanogaster</i> en interacción con Spiroplasma y avispas parasitoides, correspondiente al tiempo 2 post parasitismo<br>
DOI: 10.5281/zenodo.4716876
title: Hybrid Build and Test Selection Strategies in Continuous Integration

description: Data set for combining existing build and test selection approaches in a hybrid way.
DOI: 10.5281/zenodo.4606901
title: Docking fragment screen against Nsp3 macrodomain of SARS-CoV-2

description: This directory contains all files required to perform the docking screens presented in the manuscript. Docking was performed with DOCK3.7 which can be downloaded free of charge for academic users at: <br> http://dock.compbio.ucsf.edu Files included in this directory: dockfiles/<br> -contains all required input files for DOCK3.7 to run docking. INDOCK<br> -list of DOCK3.7 parameters ZINC15_fragments_20200422.sdi<br> -list of tranches for the entire ZINC15 fragment screen downloaded from http://zinc15.docking.org on April 22 2020. ZINC15_instock_fragments_20200513.sdi<br> -list of tranches for the ZINC15 in-stock fragment screen downloaded from http://zinc15.docking.org on May 13 2020. extract_all.sort.uniq.ZINC15-fragments.txt<br> extract_all.sort.uniq.ZINC15-in-stock.txt<br> extract_all.sort.uniq.in-human.txt<br> -Rank-ordered lists of docked compounds from different library screens Contact:<br> stefan.gahbauer@ucsf.edu
DOI: 10.5281/zenodo.4628875
title: Isothermal Titration Calorimetry of fragments and Nsp3 macrodomain of SARS-CoV-2

description: This directory contains all files required to analyze the Isothermal Titration Calorimetry (ITC) data presented in the manuscript. ITC was performed using a MicroCal iTC200 and data was previewed using Origin (https://www.originlab.com). Analysis was performed using RITC (https://rdrr.io/cran/Ritc/) Files included in this directory:<br> Data_Summary.xlsx<br> - tracking sheet of all ITC experiments performed for manuscript.<br> - includes information on experimental conditions for individual experiments. Docking Fragments <br> - contains sub-directories for each compound tested by ITC. Each sub-directory contains raw ITC files (.itc), Origin Project files (.OPJ), images of isotherm (.png), and experimental values for analysis (.csv). Figures<br> - contains images of isotherm (.png) and experimental values for analysis (.csv) for all compounds reported. Figures (.png) as shown in manuscript appear in sub-directory "<br> /summarised_fits.csv<br> - reports R^2, Ka, ∆H, and Heat of Dilution for each compound analyzed using RITC. Contact:<br> roberto.diaz@ucsf.edu
DOI: 10.5281/zenodo.4628855
title: Differential Scanning Fluorimetry of Nsp3 macrodomain of SARS-CoV-2

description: This folder contains DSF data presented for the manuscript "Fragment Binding to the Nsp3 Macrodomain of SARS-CoV-2 Identified Through Crystallographic Screening and Computational Docking" published in Science Advances in 2021. It contains the raw data, in both normalized and non-normalized form, as well as the apparent melting temperatures. <br> For convenience, each dataset is included in at least two different formats, but the data is the same between the differently-formatted files. The raw data, as seen in Supplementary Figure 9, and Supplementary Dataset 2<br> (Files 1-4 contain identical data, in different formats, for user convenience)<br> File 1 - To read into R as "long form" data, both normalized and non-normalized RFU: 2021_sci_advances_nsp3_mac1_dsf_raw_data_long_form.rds<br> File 2 - A csv, identical in structure to File 1: 2021_sci_advances_nsp3_mac1_dsf_raw_data_long_form.csv<br> File 3 - A csv containing "wide-form" RFU data: 2021_sci_advances_nsp3_mac1_dsf_raw_rfu_data_wide_form.csv<br> File 4 - A csv containing "wide-form" normalized RFU data: 2021_sci_advances_nsp3_mac1_dsf_raw_rfu_data_normalized_wide_form.csv The Tma data, as seen in Supplementary Figure 9, Supplementary Dataset 1, and Supplementary Dataset 2: <br> (Files 5-6 contain identical data, in different formats, for user convenience)<br> File 5 - To read into R as "long form" data: 2021_sci_advances_nsp3_mac1_dsf_tmas.rds<br> File 6 - A csv, identical in structure to File 5: 2021_sci_advances_nsp3_mac1_dsf_tmas.csv
DOI: 10.5281/zenodo.4606900
title: Docking fragment screen against Nsp3 macrodomain of SARS-CoV-2

description: This directory contains all files required to perform the docking screens presented in the manuscript. Docking was performed with DOCK3.7 which can be downloaded free of charge for academic users at: <br> http://dock.compbio.ucsf.edu Files included in this directory: dockfiles/<br> -contains all required input files for DOCK3.7 to run docking. INDOCK<br> -list of DOCK3.7 parameters ZINC15_fragments_20200422.sdi<br> -list of tranches for the entire ZINC15 fragment screen downloaded from http://zinc15.docking.org on April 22 2020. ZINC15_instock_fragments_20200513.sdi<br> -list of tranches for the ZINC15 in-stock fragment screen downloaded from http://zinc15.docking.org on May 13 2020. extract_all.sort.uniq.ZINC15-fragments.txt<br> extract_all.sort.uniq.ZINC15-in-stock.txt<br> extract_all.sort.uniq.in-human.txt<br> -Rank-ordered lists of docked compounds from different library screens Contact:<br> stefan.gahbauer@ucsf.edu
DOI: 10.5281/zenodo.4628874
title: Isothermal Titration Calorimetry of fragments and Nsp3 macrodomain of SARS-CoV-2

description: This directory contains all files required to analyze the Isothermal Titration Calorimetry (ITC) data presented in the manuscript. ITC was performed using a MicroCal iTC200 and data was previewed using Origin (https://www.originlab.com). Analysis was performed using RITC (https://rdrr.io/cran/Ritc/) Files included in this directory:<br> Data_Summary.xlsx<br> - tracking sheet of all ITC experiments performed for manuscript.<br> - includes information on experimental conditions for individual experiments. Docking Fragments <br> - contains sub-directories for each compound tested by ITC. Each sub-directory contains raw ITC files (.itc), Origin Project files (.OPJ), images of isotherm (.png), and experimental values for analysis (.csv). Figures<br> - contains images of isotherm (.png) and experimental values for analysis (.csv) for all compounds reported. Figures (.png) as shown in manuscript appear in sub-directory "<br> /summarised_fits.csv<br> - reports R^2, Ka, ∆H, and Heat of Dilution for each compound analyzed using RITC. Contact:<br> roberto.diaz@ucsf.edu
DOI: 10.5281/zenodo.4628854
title: Differential Scanning Fluorimetry of Nsp3 macrodomain of SARS-CoV-2

description: This folder contains DSF data presented for the manuscript "Fragment Binding to the Nsp3 Macrodomain of SARS-CoV-2 Identified Through Crystallographic Screening and Computational Docking" published in Science Advances in 2021. It contains the raw data, in both normalized and non-normalized form, as well as the apparent melting temperatures. <br> For convenience, each dataset is included in at least two different formats, but the data is the same between the differently-formatted files. The raw data, as seen in Supplementary Figure 9, and Supplementary Dataset 2<br> (Files 1-4 contain identical data, in different formats, for user convenience)<br> File 1 - To read into R as "long form" data, both normalized and non-normalized RFU: 2021_sci_advances_nsp3_mac1_dsf_raw_data_long_form.rds<br> File 2 - A csv, identical in structure to File 1: 2021_sci_advances_nsp3_mac1_dsf_raw_data_long_form.csv<br> File 3 - A csv containing "wide-form" RFU data: 2021_sci_advances_nsp3_mac1_dsf_raw_rfu_data_wide_form.csv<br> File 4 - A csv containing "wide-form" normalized RFU data: 2021_sci_advances_nsp3_mac1_dsf_raw_rfu_data_normalized_wide_form.csv The Tma data, as seen in Supplementary Figure 9, Supplementary Dataset 1, and Supplementary Dataset 2: <br> (Files 5-6 contain identical data, in different formats, for user convenience)<br> File 5 - To read into R as "long form" data: 2021_sci_advances_nsp3_mac1_dsf_tmas.rds<br> File 6 - A csv, identical in structure to File 5: 2021_sci_advances_nsp3_mac1_dsf_tmas.csv
DOI: 10.5519/qd.3qkz4k4f
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (840 records)