cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5551226
title: Oct2021 reference datasets for Mitohelper

description: <strong>Reference datasets (Oct 2021 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Oct2021.tsv (712,967 records) mitofish.12S.Oct2021.tsv (38,739 records) mitofish.COI.Oct2021.tsv (244,807 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
DOI: 10.5281/zenodo.5748588
title: Dec2021 reference datasets for Mitohelper

description: <strong>Reference datasets (Dec 2021 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Dec2021.tsv (724,918 records) mitofish.12S.Dec2021.tsv (39,085 records; added new keyword "genome assembly") mitofish.COI.Dec2021.tsv (249,538 records; added new keyword "genome assembly") II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
DOI: 10.5281/zenodo.5816200
title: Jan2022 reference datasets for Mitohelper

description: <strong>Reference datasets (Jan 2022 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Jan2022.tsv (730,137 records) mitofish.12S.Jan2022.tsv (39,245 records) mitofish.COI.Jan2022.tsv (253,034 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
DOI: 10.5281/zenodo.6336244
title: Mar2022 reference datasets for Mitohelper

description: <strong>Reference datasets (Mar 2022 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Mar2022.tsv (738,038 records) mitofish.12S.Mar2022.tsv (40,019 records) mitofish.COI.Mar2022.tsv (257,414 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
DOI: 10.5281/zenodo.6522134
title: May2022 reference datasets for Mitohelper

description: <strong>Reference datasets (May 2022 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.May2022.tsv (738,109 records) mitofish.12S.May2022.tsv (40,245 records) mitofish.COI.May2022.tsv (258,943 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
DOI: 10.5281/zenodo.6811493
title: Jul2022 reference datasets for Mitohelper

description: <strong>Reference datasets (July 2022 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Jul2022.tsv (748,772 records) mitofish.12S.Jul2022.tsv (40,541 records) mitofish.COI.Jul2022.tsv (265,763 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
description: In the July version of Mitofish, 6,440 UNVERIFIED records were included. These were removed in mitohelper's dataset. In addition, 654 valid records were in old versions of Mitofish but not in the July version. These were not removed in mitohelper's dataset.
DOI: 10.5281/zenodo.7105046
title: Sep2022 reference datasets for Mitohelper

description: <strong>Reference datasets (Sep 2022 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Sep2022.tsv (756,196 records) mitofish.12S.Sep2022.tsv (40,721 records) mitofish.COI.Sep2022.tsv (269,479 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
DOI: 10.5281/zenodo.7671999
title: Feb2023 reference datasets for Mitohelper

description: <strong>Reference datasets (Feb2023 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Feb2023.tsv (796,087 records) mitofish.12S.Feb2023.tsv (46,694 records) mitofish.12S.Feb2023_NR.fasta (fasta file of 12S rRNA gene records) mitofish.COI.Feb2023.tsv (321,053 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
description: Major update (Nov2022): The 12S rRNA gene sequence dataset is now filtered to only contain mitochondrial genomes annotated with 12S rRNA gene sequences. Sequences of the 12S rRNA gene are now extracted from complete mitochondrial genomes to construct a more gene-specific 12S rRNA dataset. 12S rRNA gene sequences in mitohelper's dataset are available for download as mitofish.12S.Feb2023_NR.fasta
DOI: 10.5281/zenodo.7714173
title: Mar2023 reference datasets for Mitohelper

description: <strong>Reference datasets (Mar2023 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Major update (Nov2022): The 12S rRNA gene sequence dataset is now filtered to only contain mitochondrial genomes annotated with 12S rRNA gene sequences. Sequences of the 12S rRNA gene are now extracted from complete mitochondrial genomes to construct a more gene-specific 12S rRNA dataset. 12S rRNA gene sequences in mitohelper's dataset are available for download as mitofish.12S.Feb2023_NR.fasta Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Mar2023.tsv (795,633 records) mitofish.12S.Mar2023.tsv (46,694 records) mitofish.12S.Mar2023_NR.fasta (fasta file of 12S rRNA gene records) mitofish.COI.Mar2023.tsv (321,053 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
description: Mar2023 update: Fixed records with null taxIDs; removed 454 unverified records in "all" dataset
DOI: 10.5281/zenodo.7925541
title: May2023 reference datasets for Mitohelper

description: <strong>Reference datasets (May2023 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Major update (Nov2022): The 12S rRNA gene sequence dataset is now filtered to only contain mitochondrial genomes annotated with 12S rRNA gene sequences. Sequences of the 12S rRNA gene are now extracted from complete mitochondrial genomes to construct a more gene-specific 12S rRNA dataset. 12S rRNA gene sequences in mitohelper's dataset are available for download as mitofish.12S.$month$year_NR.fasta Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.May2023.tsv (809,533 records) mitofish.12S.May2023.tsv (48,327 records) mitofish.12S.May2023_NR.fasta (fasta file of 12S rRNA gene records) mitofish.COI.May2023.tsv (329,730 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
DOI: 10.5281/zenodo.8044667
title: May2023 reference datasets for Mitohelper (deduplicated)

description: <strong>Reference datasets (May2023 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Update (Jun2022): 251 erroneous duplicated records in the 12S rRNA data file were removed. These erroneous duplications are due to a bug in the script used to extract 12S rRNA gene sequences from mitogenome annotations. Note that four mitogenome records (AP005998, KJ643927, NC_024573, OP326524) in the May2023 release contain 2 copies of the 12S rRNA gene. These were presented as separate entries sharing the same accession number in mitofish.12S.May2023.tsv. Major update (Nov2022): The 12S rRNA gene sequence dataset is now filtered to only contain mitochondrial genomes annotated with 12S rRNA gene sequences. Sequences of the 12S rRNA gene are now extracted from complete mitochondrial genomes to construct a more gene-specific 12S rRNA dataset. 12S rRNA gene sequences in mitohelper's dataset are available for download as mitofish.12S.$month$year_NR.fasta Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.May2023.tsv (809,533 records) mitofish.12S.May2023.tsv (48,076 records) mitofish.12S.May2023_NR.fasta (fasta file of 12S rRNA gene records) mitofish.COI.May2023.tsv (329,730 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
DOI: 10.5281/zenodo.8239400
title: Aug2023 reference datasets for Mitohelper (deduplicated)

description: <strong>Reference datasets (Aug2023 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Major update (Nov2022): The 12S rRNA gene sequence dataset is now filtered to only contain mitochondrial genomes annotated with 12S rRNA gene sequences. Sequences of the 12S rRNA gene are now extracted from complete mitochondrial genomes to construct a more gene-specific 12S rRNA dataset. 12S rRNA gene sequences in mitohelper's dataset are available for download as mitofish.12S.$month$year_NR.fasta Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Aug2023.tsv (820,009 records) mitofish.12S.Aug2023.tsv (50,078 records) mitofish.12S.Aug2023_NR.fasta (fasta file of 12S rRNA gene records) mitofish.COI.Aug2023.tsv (335,214 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
DOI: 10.5281/zenodo.8240018
title: Sep2023 reference datasets for Mitohelper

description: <strong>Reference datasets (Sep2023 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Major update (Nov2022): The 12S rRNA gene sequence dataset is now filtered to only contain mitochondrial genomes annotated with 12S rRNA gene sequences. Sequences of the 12S rRNA gene are now extracted from complete mitochondrial genomes to construct a more gene-specific 12S rRNA dataset. 12S rRNA gene sequences in mitohelper's dataset are available for download as mitofish.12S.$month$year_NR.fasta Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Sep2023.tsv (824,625 records) mitofish.12S.Sep2023.tsv (50,369 records) mitofish.12S.Sep2023_NR.fasta (FASTA file of 12S rRNA gene records) mitofish.COI.Sep2023.tsv (337,262 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
DOI: 10.5281/zenodo.8428816
title: Oct2023 reference datasets for Mitohelper

description: <strong>Reference datasets (Oct2023 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Major update (Nov2022): The 12S rRNA gene sequence dataset is now filtered to only contain mitochondrial genomes annotated with 12S rRNA gene sequences. Sequences of the 12S rRNA gene are now extracted from complete mitochondrial genomes to construct a more gene-specific 12S rRNA dataset. 12S rRNA gene sequences in mitohelper's dataset are available for download as mitofish.12S.$month$year_NR.fasta Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Oct2023.tsv (829,196 records) mitofish.12S.Oct2023.tsv (51,512 records) mitofish.12S.Oct2023_NR.fasta (FASTA file of 12S rRNA gene records) mitofish.COI.Oct2023.tsv (339,894 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
DOI: 10.15468/dl.qgzpvy
title: Occurrence Download

description: A dataset containing 19900464 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "SpeciesKey is not null",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 },
 {
 "not" : {
 "License" : [
 "is one of (CC-BY-NC 4.0)"
 ]
 }
 },
 {
 "and" : [
 "Year is greater than or equal to 2015",
 "Year is less than 2018"
 ]
 }
 ]
}

 The dataset includes 19900464 records from 3346 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009224-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive22638.20251217.10
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22639.20230509.8.1
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22639.20251217.10
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22640.20230509.8.1
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22640.20251217.10
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22641.20230509.8.1
title: Nannocystis sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22641.20251217.10
title: Nannocystis sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22642.20230509.8.1
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22642.20251217.10
title: Nannocystis exedens

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22643.20230509.8.1
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22643.20251217.10
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22644.20230509.8.1
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive22644.20251217.10
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0089946.10fu
title: SH0089946.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive22645.20230509.8.1
title: Herpetosiphon sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.