cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/cmd3z85t56.2
title: Dataset for Validation of Tans-Layer Model Learning of Multi-component Systems

description: Enclose are two datasets: The first dataset is a collection of system output of a simulative multi-component systems containing a paralell structure and a curcuit for closed-loop control. The dataset contains 500 samples dispersed across the operation regime of the system, this dataset is meant to testify the capability of Hybrid Trans-level Model Learning Strategy ( HTMLS) to overcome measurement dificiency and generate high-fidelity models for components; The second dataset is a industrial dataset generated by a commercial twin-shaft turbofan engine, which produced about 33000 lbs thrust for aircrafts. This data set also contains 500 samples of the thermal-dynamical reading inside the engine, which characterized the profile of the steady cruise state of this type of engine. This dataset was meant to validate the modeling accuracy and efficiency of HTMLS.
DOI: 10.17632/5ccwt5fv7y.1
title: UMAT subroutines for linear, bilinear, piecewise Drucker-Prager models

description: These are developed UMAT subroutines for linear, bilinear and piecewise Drucker-Prager models. The dilatancy angle and strain hardening can be considered in these models.
DOI: 10.17632/5ccwt5fv7y.2
title: UMAT subroutines for linear, bilinear, piecewise Drucker-Prager models

description: These are developed UMAT subroutines for linear, bilinear and piecewise Drucker-Prager models. The dilatancy angle and strain hardening can be considered in these models.
DOI: 10.5281/zenodo.1162361
title: Optimising C2C12 Muscle Myoblast Transfection With Polyethylenimine (Pei) Or Lipofectamine-2000

description: Optimisation of DNA transfection of the C2C12 muscle myoblast cell line, comparing use of polyethylenimine (PEI) and Lipofectamine-2000 with varying treatment conditions.
description: Funding Acknowledgment: The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.5281/zenodo.1162362
title: Optimising C2C12 Muscle Myoblast Transfection With Polyethylenimine (Pei) Or Lipofectamine-2000

description: Optimisation of DNA transfection of the C2C12 muscle myoblast cell line, comparing use of polyethylenimine (PEI) and Lipofectamine-2000 with varying treatment conditions.
description: Funding Acknowledgment: The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.18434/m39w9s
title: NISTfit

description: NISTFIT is a heavily abstracted C++-based kernel for fitting correlations. The software is written in our source languages. The current trend in computer architecture is for increasingly parallel computation while the clock frequency stagnates. The increase in computing speed is achieved by dividing a process into several threads which are executed in parallel on multiple processors, processors with multiple cores, cores that are able to handle multiple threads (hyper-threading), graphical processing units (GPU), or co-processors. In order to take advantage of these new architectures, algorithms that have historically been implemented for serial evaluation need to be refactored for parallelization. In this work, a native multithreading framework in C++11 for scientific and engineering model development is presented.The motivation for NISTfit is to develop a modern C++11-based library for this problem that is:•          Cross-platform: NISTfit has only very minimal header-only dependencies (Eigen and ThreadPool), and builds reliably on all major architectures; a CMake build file is provided.•          Easy to use: There are a multitude of similar libraries for model fitting (e.g., MINPACK 1, levmar2, Eigen’s Levenberg-Marquardt module 3, to name but a few) that a) are based on archaic FORTRAN/C/C++ constructs, b) require significant boilerplate to solve simple problems, or c) have difficult-to-build dependencies. It is the opinion of the authors of NISTfit that NISTfit strikes a good balance of power and ease-of-use for simple fitting problems. The code utilizes modern C++11 constructs and will build on any C++11 compliant compiler.•          Parallelizable: The future is parallel, and NISTfit is able to achieve near-theoretical speedup as more cores are made available to the fitting for sufficiently expensive models.
DOI: 10.17632/4ck6sf77z5.2
title: Detection of Salivary Protein Biomarkers in a Primary Sjögren Syndrome Murine Model

description: Salivary biomarkers related to saliva secretion disorder were identified in a primary Sjögren syndrome (pSS)pSS murine model, NOD/ShiLtJ mouse, using differential proteomic analysis. We used 14-week-old female NOD/ShiLtJ mice and age- and sex-matched BALB/c mice as controls. 30 stimulated saliva samples and mixed them into six protein pools (three pSS pools and three control pools) for differential proteomic analysis.After Nano-high-performance liquid chromatography tandem mass spectrometry (HPLC-MS/MS) separation, 98.14% (69,276/69,276) spectra were used for protein identification. We identified 1,101 proteins from saliva; 68.12% (750/1,101) were detected both in NOD/ShiLtJ and BALB/c mice .Two mice strains showed a similar salivary protein spectrum. Differentially expressed proteins were determined by applying Mann-Whitney test, corrected by Benjamini-Hochberg method at a significance level of p&lt;0.03173 and fold change of &gt;1.5.
DOI: 10.17632/pp69mvhctt.1
title: Social Well-being & Civic Engagement among Aged Citizens in Ahwäz City-Iran

description: This data-set is compiled over the years 2009 to 2018. The statistical population is older adults who aged 60 years old & over in Ahwaz metropolitan , southwest of Iran. About 885 elderly male & female were interviewed.
DOI: 10.17632/4ck6sf77z5.1
title: Detection of Salivary Protein Biomarkers in a Primary Sjögren Syndrome Murine Model

description: Salivary biomarkers related to saliva secretion disorder were identified in a primary Sjögren syndrome (pSS)pSS murine model, NOD/ShiLtJ mouse, using differential proteomic analysis. We used 14-week-old female NOD/ShiLtJ mice and age- and sex-matched BALB/c mice as controls. 30 stimulated saliva samples and mixed them into six protein pools (three pSS pools and three control pools) for differential proteomic analysis.After Nano-high-performance liquid chromatography tandem mass spectrometry (HPLC-MS/MS) separation, 98.14% (69,276/69,276) spectra were used for protein identification. We identified 1,101 proteins from saliva; 68.12% (750/1,101) were detected both in NOD/ShiLtJ and BALB/c mice .Two mice strains showed a similar salivary protein spectrum. Differentially expressed proteins were determined by applying Mann-Whitney test, corrected by Benjamini-Hochberg method at a significance level of p&lt;0.03173 and fold change of &gt;1.5.
DOI: 10.17632/4ck6sf77z5.3
title: Detection of Salivary Protein Biomarkers in a Primary Sjögren Syndrome Murine Model

description: Salivary biomarkers related to saliva secretion disorder were identified in a primary Sjögren syndrome (pSS)pSS murine model, NOD/ShiLtJ mouse, using differential proteomic analysis. We used 14-week-old female NOD/ShiLtJ mice and age- and sex-matched BALB/c mice as controls. 30 stimulated saliva samples and mixed them into six protein pools (three pSS pools and three control pools) for differential proteomic analysis.After Nano-high-performance liquid chromatography tandem mass spectrometry (HPLC-MS/MS) separation, 98.14% (69,276/69,276) spectra were used for protein identification. We identified 1,101 proteins from saliva; 68.12% (750/1,101) were detected both in NOD/ShiLtJ and BALB/c mice .Two mice strains showed a similar salivary protein spectrum. Differentially expressed proteins were determined by applying Mann-Whitney test, corrected by Benjamini-Hochberg method at a significance level of p&lt;0.03173 and fold change of &gt;1.5.
DOI: 10.5281/zenodo.1163524
title: Gaming Horizons Stakeholder Interviews - Anonymised

description: Anonymised transcripts of interviews carried out between March and June 2017. The interviews involved representatives from 4 stakeholder groups: game developers, researchers, educators, young players, and policy makers. The interviews explored the cultural, educational and ethical implications associated with the design and the usage of video games in European society. A report based on the findings can be downloaded from https://www.gaminghorizons.eu/deliverables/
DOI: 10.5281/zenodo.1163525
title: Gaming Horizons Stakeholder Interviews - Anonymised

description: Anonymised transcripts of interviews carried out between March and June 2017. The interviews involved representatives from 4 stakeholder groups: game developers, researchers, educators, young players, and policy makers. The interviews explored the cultural, educational and ethical implications associated with the design and the usage of video games in European society. A report based on the findings can be downloaded from https://www.gaminghorizons.eu/deliverables/
DOI: 10.15468/shyq3j
title: First records of the uristid lysianassoids from Korean waters: redescription of Anonyxabei Takekawa & Ishimaru, 2001 and description of Anonyxexilipes sp. n. (Crustacea, Amphipoda, Uristidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Jung, Tae Won, Coleman, Charles Oliver, Kim, Ji Hyung, Yoon, Seong Myeong (2018): First records of the uristid lysianassoids from Korean waters: redescription of Anonyxabei Takekawa & Ishimaru, 2001 and description of Anonyxexilipes sp. n. (Crustacea, Amphipoda, Uristidae). ZooKeys 733: 99-117, DOI: http://dx.doi.org/10.3897/zookeys.733.22021, URL: http://dx.doi.org/10.3897/zookeys.733.22021
DOI: 10.15468/englmq
title: Xylopsoracanopeorum (Umbilicariaceae), a new lichen species from the canopy of Sequoiasempervirens

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bendiksby, Mika, Naesborg, Rikke Reese, Timdal, Einar (2018): Xylopsoracanopeorum (Umbilicariaceae), a new lichen species from the canopy of Sequoiasempervirens. MycoKeys 30: 1-15, DOI: http://dx.doi.org/10.3897/mycokeys.30.22271, URL: http://dx.doi.org/10.3897/mycokeys.30.22271
DOI: 10.17632/4ck6sf77z5.4
title: Detection of Salivary Protein Biomarkers in a Primary Sjögren Syndrome Murine Model

description: Salivary biomarkers related to saliva secretion disorder were identified in a primary Sjögren syndrome (pSS)pSS murine model, NOD/ShiLtJ mouse, using differential proteomic analysis. We used 14-week-old female NOD/ShiLtJ mice and age- and sex-matched BALB/c mice as controls. 30 stimulated saliva samples and mixed them into six protein pools (three pSS pools and three control pools) for differential proteomic analysis.After Nano-high-performance liquid chromatography tandem mass spectrometry (HPLC-MS/MS) separation, 98.14% (69,276/69,276) spectra were used for protein identification. We identified 1,101 proteins from saliva; 68.12% (750/1,101) were detected both in NOD/ShiLtJ and BALB/c mice .Two mice strains showed a similar salivary protein spectrum. Differentially expressed proteins were determined by applying Mann-Whitney test, corrected by Benjamini-Hochberg method at a significance level of p&lt;0.03173 and fold change of &gt;1.5.
DOI: 10.5281/zenodo.1163583
title: Gaming Horizons Stakeholder Interviews - Anonymised

description: Anonymised transcripts of interviews carried out between March and June 2017. The interviews involved representatives from 4 stakeholder groups: game developers, researchers, educators, young players, and policy makers. The interviews explored the cultural, educational and ethical implications associated with the design and the usage of video games in European society. A report based on the findings can be downloaded from https://www.gaminghorizons.eu/deliverables/ 

A CSV file called Interviews metadata reports basic information for each interviewee: stakeholder type, gender and provenance.
DOI: 10.5281/zenodo.1163735
title: Fred_Database

description: Study database
DOI: 10.5281/zenodo.1163736
title: Fred_Database

description: Study database
DOI: 10.17632/tzzfkpffrf.1
title: Shiraz Women's Healthy Ageing Cohort Project(SWHACP©)

description: The attached data-set is a comprehensive and expanded study on women's health and aging in the city of Shiraz in 2018. The statistical population includes all elderly women over 60 years of age living in Shiraz, southern Iran. The sample includes 9117 elderly female and data was collected over the years 2016 till now.
DOI: 10.5281/zenodo.1163678
title: 2015-2017 Gypsy Moth Defoliation Assessment (Southern New England)

description: -------------------------------------------------------------------------------------

<strong>THIS REPOSITORY IS NO LONGER ACTIVELY MAINTAINED.</strong>

Please see updated reanalysis products available here: https://zenodo.org/record/1493407#.XLikbpNKjOQ

-------------------------------------------------------------------------------------

This dataset accompanies the manuscript, "<strong>Extensive gypsy moth defoliation in Southern New England characterized using Landsat satellite observations"</strong>, and includes Landsat time series-based estimates of gypsy moth defoliation for 2015, 2016, and 2017. The study area is defined by Landsat WRS-2 Path/Rows 12/31 and 13/31 and covers Southern New England (RI, CT, and southern MA). The following data products are available for each year:


	GeoTIFF of number of Landsat observations used to estimate changes in condition (*_nobs.tif)
	GeoTIFF of mean "condition" scores, where values represent the mean of the difference between observed and predicted Tasseled Cap Greenness normalized by the root mean squared error (RMSE) of a harmonic regression mode<strong>l </strong>fit to a 10-year time series of greenness observation for each pixel (*_meanresiduals.tif)
	GeoTIFF of masked condition scores, where non-forested areas in the mean condition score dataset have been excluded (nodata=-9999) based on a forest/non-forest mask generated from the National Land Cover Dataset (*_meanresiduals_forestmask.tif). The NLCD mask is also included (NLCD_forest_mask.tif)
	JPEG images showing final products where average difference scores were binned into four severity categories: <em>slight change </em>(deviations 1 to 2 times the model RMSE<em>)</em>, <em>moderate change </em>(deviations 2 to 3 times the model RMSE<em>)</em>, <em>large change </em>(deviations 3 to 4 times the model RMSE<em>)</em>, and <em>very large change </em>(deviations greater than 4 times the model RMSE<em>) </em>


All GeoTIFFs are georeferenced and provided in NAD/Conus Albers (EPSG: 5070).

Near-real-time monitoring results (i.e. condition score GeoTIFFs for each acquisition date during the May-September monitoring period) available by request.

For more on the methods used to generate these datasets, see Pasquarella, V.J., Bradley, B.A, & Woodcock, C.E. Near-real-time monitoring of insect defoliation using Landsat time series. <em>Forests</em> <em>8</em>(8), 275; doi:10.3390/f8080275, available online: http://www.mdpi.com/1999-4907/8/8/275
description: SEE https://zenodo.org/record/1493407#.XLikbpNKjOQ FOR UPDATED REANALYSIS DATASETS
DOI: 10.5281/zenodo.1163679
title: 2015-2017 Gypsy Moth Defoliation Assessment (Southern New England)

description: -------------------------------------------------------------------------------------

<strong>THIS REPOSITORY IS NO LONGER ACTIVELY MAINTAINED.</strong>

Please see updated reanalysis products available here: https://zenodo.org/record/1493407#.XLikbpNKjOQ

-------------------------------------------------------------------------------------

This dataset accompanies the manuscript, "<strong>Extensive gypsy moth defoliation in Southern New England characterized using Landsat satellite observations"</strong>, and includes Landsat time series-based estimates of gypsy moth defoliation for 2015, 2016, and 2017. The study area is defined by Landsat WRS-2 Path/Rows 12/31 and 13/31 and covers Southern New England (RI, CT, and southern MA). The following data products are available for each year:


	GeoTIFF of number of Landsat observations used to estimate changes in condition (*_nobs.tif)
	GeoTIFF of mean "condition" scores, where values represent the mean of the difference between observed and predicted Tasseled Cap Greenness normalized by the root mean squared error (RMSE) of a harmonic regression mode<strong>l </strong>fit to a 10-year time series of greenness observation for each pixel (*_meanresiduals.tif)
	GeoTIFF of masked condition scores, where non-forested areas in the mean condition score dataset have been excluded (nodata=-9999) based on a forest/non-forest mask generated from the National Land Cover Dataset (*_meanresiduals_forestmask.tif). The NLCD mask is also included (NLCD_forest_mask.tif)
	JPEG images showing final products where average difference scores were binned into four severity categories: <em>slight change </em>(deviations 1 to 2 times the model RMSE<em>)</em>, <em>moderate change </em>(deviations 2 to 3 times the model RMSE<em>)</em>, <em>large change </em>(deviations 3 to 4 times the model RMSE<em>)</em>, and <em>very large change </em>(deviations greater than 4 times the model RMSE<em>) </em>


All GeoTIFFs are georeferenced and provided in NAD/Conus Albers (EPSG: 5070).

Near-real-time monitoring results (i.e. condition score GeoTIFFs for each acquisition date during the May-September monitoring period) available by request.

For more on the methods used to generate these datasets, see Pasquarella, V.J., Bradley, B.A, & Woodcock, C.E. Near-real-time monitoring of insect defoliation using Landsat time series. <em>Forests</em> <em>8</em>(8), 275; doi:10.3390/f8080275, available online: http://www.mdpi.com/1999-4907/8/8/275
description: SEE https://zenodo.org/record/1493407#.XLikbpNKjOQ FOR UPDATED REANALYSIS DATASETS
DOI: 10.5281/zenodo.1163602
title: A Comprehensive Approach For The Design Of Solvent-Based Adhesive Products Using Generalized Disjunctive Programming

description: The files contain all the product design problems implemented in GAMS for this publication.

All models are solved in GAMS version 24.8.3 and are run on a single core of a dual 6 core Intel Xeon E5-1660 machine at<br>
3.30 GHz.
DOI: 10.5281/zenodo.1163603
title: A Comprehensive Approach For The Design Of Solvent-Based Adhesive Products Using Generalized Disjunctive Programming

description: The files contain all the product design problems implemented in GAMS for this publication.

All models are solved in GAMS version 24.8.3 and are run on a single core of a dual 6 core Intel Xeon E5-1660 machine at<br>
3.30 GHz.
DOI: 10.5281/zenodo.1117194
title: Results Of Survey To Potential Users Of Repositories Of European Poetry On The Informational Needs

description: This excel file presents the results of a survey to potential final users of digital repertoires of the European Poetry in order to understand their information needs. This file also presents results of the analysis to the survey: answers to the specific needs of the results - in black if the domain model responds to the needs; green if a new element to the domain is added due to the result.

This survey was done in the context of the definition of a domain model for the european poetry. A domain model (or data model) is a milestone in the process of development of a metadata application profile.

Together with this survey, other efforts were taken in place:

1) Analysis of the structure of databases that serve digital repertoires of European Poetry

2) Analysis of the information needs of graphical user interphaces of the digital repertoires of European Poetry

The map https://goo.gl/O0mqhI presents the repertoires used and the phases of the analysis.

This work is framed in a Starting Grant research project Poetry Standardization and Linked Open Data: POSTDATA (ERC-2015-STG-679528), funded by European Research Council (ERC).
DOI: 10.5281/zenodo.1117193
title: Results Of Survey To Potential Users Of Repositories Of European Poetry On The Informational Needs

description: This excel file presents the results of a survey to potential final users of digital repertoires of the European Poetry in order to understand their information needs. This file also presents results of the analysis to the survey: answers to the specific needs of the results - in black if the domain model responds to the needs; green if a new element to the domain is added due to the result.

This survey was done in the context of the definition of a domain model for the european poetry. A domain model (or data model) is a milestone in the process of development of a metadata application profile.

Together with this survey, other efforts were taken in place:

1) Analysis of the structure of databases that serve digital repertoires of European Poetry

2) Analysis of the information needs of graphical user interphaces of the digital repertoires of European Poetry

The map https://goo.gl/O0mqhI presents the repertoires used and the phases of the analysis.

This work is framed in a Starting Grant research project Poetry Standardization and Linked Open Data: POSTDATA (ERC-2015-STG-679528), funded by European Research Council (ERC).
DOI: 10.14457/tu.the.2016.523
title: Design of beam shaping assembly (BSA) of D-D neutron source for boron neutron capture therapy (BNCT)

description: Boron Neutron Capture Therapy (BNCT) has for many decades been promoted as an innovative form of radiotherapy and has the potential to be the ideal form of treatment for many types of cancers. To properly utilize BNCT method, neutrons must have a specific properties, where can be achieved by treating with a particular system, called a beam shaping assembly (BSA). By using appropriate geometry configuration and material selection for BSA, the high quality of neutron beam can be achieved. In this thesis, a BSA for modifying fast neutrons from D-D nuclear reactions for BNCT was designed using the Monte Carlo simulation code Particle Heavy and Ion Transport code System (PHITS). The proposed BSA consisted of 4 cm of Pb as a multiplier, 16 cm of TiF3 as a first moderator, 60 cm of AlF3 as a second moderator, 30 cm of Al2O3 as a reflector, and 3 cm of Li as a thermal filter. These results are evaluated with the standard recommended by the International Atomic Energy Agency (IAEA). The results showed that the proposed BSA was capable of producing neutron flux with φepi/φfast of 27 and φepi/φthermal of 126, satisfying the IAEA recommendation of neutron beams used for BNCT. It was also found that the proposed BSA showed a better performance compared to the existing BSA designs in terms of the epithermal neutron output quality without the need of fast neutron filters.