cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hag7r5
title: Occurrence Download

description: A dataset containing 10899 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primula marginata Curtis"
 ]
}

 The dataset includes 10899 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085914-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rk87xk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Artemisia scoparia Waldst. & Kit.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085919-240321170329656/datasets/export for details.
DOI: 10.15468/dl.mntxjh
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psychotria taitensis Verdc."
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085920-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vk72ha
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "HasCoordinate is false",
 "TaxonKey is Alces alces (Linnaeus, 1758)"
 ]
}

 The dataset includes 158 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085918-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3nf44k
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psorospermum membranifolium Baker"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085922-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.29fz4w
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psammotropha spicata Adamson"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085923-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fyx9tr
title: Occurrence Download

description: A dataset containing 897 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kitagawia praeruptora (Dunn) Pimenov",
 "Country is China",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 897 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085924-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rzpzqv
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Portulaca rausii Danin"
 ]
}

 The dataset includes 32 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085926-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tmpup2
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ptychosperma sanderianum Ridl."
 ]
}

 The dataset includes 37 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085925-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zacgaj
title: Occurrence Download

description: A dataset containing 246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinellia pedatisecta Schott",
 "Country is China",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 246 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085927-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m4jqbs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Artemisia sericea (Besser) Weber",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085928-240321170329656/datasets/export for details.
DOI: 10.15468/dl.xejxwh
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psychotria talasensis Sohmer"
 ]
}

 The dataset includes 44 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085929-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmghza
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psorospermum molluscum (Pers.) Hochr."
 ]
}

 The dataset includes 170 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085930-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7eu7hv
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psathyrostachys caduca (Boiss.) Melderis"
 ]
}

 The dataset includes 40 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085931-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.raww75
title: Occurrence Download

description: A dataset containing 9574 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primula matthioli (L.) V.A.Richt."
 ]
}

 The dataset includes 9574 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085932-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ckg5uy
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Renealmia dolichocalyx Maas"
 ]
}

 The dataset includes 58 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101180-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tefsxu
title: Occurrence Download

description: A dataset containing 692 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is China",
 "Country is Chinese Taipei"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is Geodetic datum assumed WGS84",
 {
 "or" : [
 "TaxonKey is Liquidambar formosana Hance",
 "TaxonKey is Polygonum tinctorium Aiton"
 ]
 }
 ]
}

 The dataset includes 692 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0383952-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-54249
title: Redemption tidings, vol. 35, nos. 1-46, 2 Jan. - 25 Dec. 1959

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.uuwxay
title: Occurrence Download

description: A dataset containing 21201396 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 21201396 records from 4321 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081400-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.14429366.v1
title: Additional file 6 of Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer

description: Additional file 6: Table S5. Luminal up-regulated genes from differentially expressed genes (DESeq2) analysis.
DOI: 10.6084/m9.figshare.14429369
title: Additional file 7 of Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer

description: Additional file 7: Table S6. H3K27ac ChIP-Seq peaks called in each cell line and its proximal/distal location w.r.t transcription start site (TSS).
DOI: 10.6084/m9.figshare.14429369.v1
title: Additional file 7 of Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer

description: Additional file 7: Table S6. H3K27ac ChIP-Seq peaks called in each cell line and its proximal/distal location w.r.t transcription start site (TSS).
DOI: 10.6084/m9.figshare.12332240
title: Additional file 2 of The association between physical activity and body fat percentage with adjustment for body mass index among middle-aged adults: China health and nutrition survey in 2015

description: Additional file 2. The overall coefficients of physical activity on body fat% among middle-aged Chinese adults in 2015.
DOI: 10.6084/m9.figshare.14429372
title: Additional file 8 of Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer

description: Additional file 8: Table S7. Epigenetic landscape of H3K27ac signals correlated and linked to nearby genes.
DOI: 10.6084/m9.figshare.12332240.v1
title: Additional file 2 of The association between physical activity and body fat percentage with adjustment for body mass index among middle-aged adults: China health and nutrition survey in 2015

description: Additional file 2. The overall coefficients of physical activity on body fat% among middle-aged Chinese adults in 2015.
DOI: 10.6084/m9.figshare.14429372.v1
title: Additional file 8 of Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer

description: Additional file 8: Table S7. Epigenetic landscape of H3K27ac signals correlated and linked to nearby genes.
DOI: 10.6084/m9.figshare.14429375
title: Additional file 9 of Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer

description: Additional file 9: Table S8. ATAC-Seq peaks called in each cell line and its proximal/distal location w.r.t transcription start site (TSS).
DOI: 10.6084/m9.figshare.12332243
title: Additional file 3 of The association between physical activity and body fat percentage with adjustment for body mass index among middle-aged adults: China health and nutrition survey in 2015

description: Additional file 3. Body fat% distribution among middle-aged Chinese adults in 2015.
DOI: 10.6084/m9.figshare.14429375.v1
title: Additional file 9 of Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer

description: Additional file 9: Table S8. ATAC-Seq peaks called in each cell line and its proximal/distal location w.r.t transcription start site (TSS).
DOI: 10.6084/m9.figshare.12332243.v1
title: Additional file 3 of The association between physical activity and body fat percentage with adjustment for body mass index among middle-aged adults: China health and nutrition survey in 2015

description: Additional file 3. Body fat% distribution among middle-aged Chinese adults in 2015.
DOI: 10.6084/m9.figshare.12332249
title: Additional file 4 of The association between physical activity and body fat percentage with adjustment for body mass index among middle-aged adults: China health and nutrition survey in 2015

description: Additional file 4. The sex-BMI-stratified coefficients of PA on BF% among middle-aged Chinese adults in 2015. The coefficients were based on the quantile regression at 10th, 25th, 50th, 75th, and 90th percentiles. * p &lt; 0.05. Model 1 was controlled for the total PA only. The individual-level variables were then added to the equation to estimate Model 2, including the sedentary activity time, age, educational level, marital status, household income level, energy intake, energy percentage from fat, BMI, smoking status, alcohol consumption status and region. For Model 3, urbanization index level was add to Model 2. Additional file 4 is a supplement file providing p values for Table 3.
DOI: 10.6084/m9.figshare.12332249.v1
title: Additional file 4 of The association between physical activity and body fat percentage with adjustment for body mass index among middle-aged adults: China health and nutrition survey in 2015

description: Additional file 4. The sex-BMI-stratified coefficients of PA on BF% among middle-aged Chinese adults in 2015. The coefficients were based on the quantile regression at 10th, 25th, 50th, 75th, and 90th percentiles. * p &lt; 0.05. Model 1 was controlled for the total PA only. The individual-level variables were then added to the equation to estimate Model 2, including the sedentary activity time, age, educational level, marital status, household income level, energy intake, energy percentage from fat, BMI, smoking status, alcohol consumption status and region. For Model 3, urbanization index level was add to Model 2. Additional file 4 is a supplement file providing p values for Table 3.
DOI: 10.6084/m9.figshare.24915225
title: Plasma methylated GNB4 and Riplet as a novel dual-marker panel for the detection of hepatocellular carcinoma

description: Early detection of hepatocellular carcinoma (HCC) can greatly improve the survival rate of patients. We aimed to develop a novel marker panel based on cell-free DNA (cfDNA) methylation for the detection of HCC. The differentially methylated CpG sites (DMCs) specific for HCC blood diagnosis were selected from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases, then validated by the whole genome bisulphite sequencing (WGBS) of 12 paired HCC and paracancerous tissues. The clinical performance of the panel was evaluated using tissue samples [32 HCC, chronic liver disease (CLD), and healthy individuals] and plasma cohorts (173 HCC, 199 CLD, and 98 healthy individuals). The combination of G protein subunit beta 4 (GNB4) and Riplet had the optimal area under the curve (AUC) in seven candidates through TCGA, GEO, and WGBS analyses. In tissue validation, the GNB4 and Riplet showed an AUC of 100% with a sensitivity and specificity of 100% for detecting any-stage HCC. In plasma, it demonstrated a high sensitivity of 84.39% at 91.92% specificity, with an AUC of 92.51% for detecting any-stage HCC. The dual-marker panel had a higher sensitivity of 78.26% for stage I HCC than alpha-fetoprotein (AFP) of 47.83%, and a high sensitivity of 70.27% for detecting a single tumour (size ≤3 cm). In conclusion, we developed a novel dual-marker panel that demonstrates high accuracy in detecting HCC, surpassing the performance of AFP testing.
DOI: 10.6084/m9.figshare.24915225.v1
title: Plasma methylated GNB4 and Riplet as a novel dual-marker panel for the detection of hepatocellular carcinoma

description: Early detection of hepatocellular carcinoma (HCC) can greatly improve the survival rate of patients. We aimed to develop a novel marker panel based on cell-free DNA (cfDNA) methylation for the detection of HCC. The differentially methylated CpG sites (DMCs) specific for HCC blood diagnosis were selected from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases, then validated by the whole genome bisulphite sequencing (WGBS) of 12 paired HCC and paracancerous tissues. The clinical performance of the panel was evaluated using tissue samples [32 HCC, chronic liver disease (CLD), and healthy individuals] and plasma cohorts (173 HCC, 199 CLD, and 98 healthy individuals). The combination of G protein subunit beta 4 (GNB4) and Riplet had the optimal area under the curve (AUC) in seven candidates through TCGA, GEO, and WGBS analyses. In tissue validation, the GNB4 and Riplet showed an AUC of 100% with a sensitivity and specificity of 100% for detecting any-stage HCC. In plasma, it demonstrated a high sensitivity of 84.39% at 91.92% specificity, with an AUC of 92.51% for detecting any-stage HCC. The dual-marker panel had a higher sensitivity of 78.26% for stage I HCC than alpha-fetoprotein (AFP) of 47.83%, and a high sensitivity of 70.27% for detecting a single tumour (size ≤3 cm). In conclusion, we developed a novel dual-marker panel that demonstrates high accuracy in detecting HCC, surpassing the performance of AFP testing.
DOI: 10.6084/m9.figshare.12332345
title: Additional file 2 of Temporal transcriptional patterns of cyanophage genes suggest synchronized infection of cyanobacteria in the oceans

description: Additional file 2: Supplementary Table 1. Periodically expressed viral genes. Supplementary Table 2. Cyanophage protein orthologs.
DOI: 10.6084/m9.figshare.12332345.v1
title: Additional file 2 of Temporal transcriptional patterns of cyanophage genes suggest synchronized infection of cyanobacteria in the oceans

description: Additional file 2: Supplementary Table 1. Periodically expressed viral genes. Supplementary Table 2. Cyanophage protein orthologs.
DOI: 10.6084/m9.figshare.25225094.v1
title: Supplementary Material for: Modelling Disease progression of Multiple Sclerosis in a South Wales Cohort

description: Objectives: To model multiple sclerosis (MS) disease progression and compare disease trajectories by sex, age of onset, and year of diagnosis.
Study Design and settings: Longitudinal EDSS scores were collected since 1985 for relapse-onset MS patients at MS clinics in South Wales and modelled using a multilevel model (MLM). The MLM adjusted for baseline covariates (sex, age of onset, year of diagnosis, and disease modifying treatments (DMTs)), and included interactions between baseline covariates and time variables. 
Results: The optimal model was truncated at 30 years after disease onset and excluded EDSS recorded within 3 months of relapse. As expected, older age of onset was associated with faster disease progression at 15 years (effect size (ES): 0.75; CI: 0.63, 0.86; P: &lt;0.001) and female sex progressed more slowly at 15 years (ES: -0.43; CI: -0.68, -0.18; P: &lt;0.001). Patients diagnosed more recently (defined as 2007-2011 and &gt;2011) progressed more slowly than those diagnosed historically (&lt;2006); (ES: -0.46; CI: -0.75, -0.16; P: 0.006) and (ES: -0.95; CI: -1.20, -0.70; P: &lt;0.001), respectively.
Conclusion: We present a novel model of MS outcomes, accounting for the nonlinear trajectory of MS and effects of baseline covariates, validating well-known risk factors (sex and age of onset) associated with disease progression. Also, patients diagnosed more recently progressed more slowly than those diagnosed historically.
DOI: 10.6084/m9.figshare.25225094
title: Supplementary Material for: Modelling Disease progression of Multiple Sclerosis in a South Wales Cohort

description: Objectives: To model multiple sclerosis (MS) disease progression and compare disease trajectories by sex, age of onset, and year of diagnosis.
Study Design and settings: Longitudinal EDSS scores were collected since 1985 for relapse-onset MS patients at MS clinics in South Wales and modelled using a multilevel model (MLM). The MLM adjusted for baseline covariates (sex, age of onset, year of diagnosis, and disease modifying treatments (DMTs)), and included interactions between baseline covariates and time variables. 
Results: The optimal model was truncated at 30 years after disease onset and excluded EDSS recorded within 3 months of relapse. As expected, older age of onset was associated with faster disease progression at 15 years (effect size (ES): 0.75; CI: 0.63, 0.86; P: &lt;0.001) and female sex progressed more slowly at 15 years (ES: -0.43; CI: -0.68, -0.18; P: &lt;0.001). Patients diagnosed more recently (defined as 2007-2011 and &gt;2011) progressed more slowly than those diagnosed historically (&lt;2006); (ES: -0.46; CI: -0.75, -0.16; P: 0.006) and (ES: -0.95; CI: -1.20, -0.70; P: &lt;0.001), respectively.
Conclusion: We present a novel model of MS outcomes, accounting for the nonlinear trajectory of MS and effects of baseline covariates, validating well-known risk factors (sex and age of onset) associated with disease progression. Also, patients diagnosed more recently progressed more slowly than those diagnosed historically.
DOI: 10.6084/m9.figshare.23866868
title: Change Point Detection in Dynamic Networks via Regularized Tensor Decomposition

description: Dynamic network captures time-varying interactions among multiple entities at different time points, and detecting its structural change points is of central interest. This article proposes a novel method for detecting change points in dynamic networks by fully exploiting the latent network structure. The proposed method builds upon a tensor-based embedding model, which models the time-varying network heterogeneity through an embedding matrix. A fused lasso penalty is equipped with the tensor decomposition formulation to estimate the embedding matrix and a power update algorithm is developed to tackle the resultant optimization task. The error bound of the obtained estimated embedding matrices is established without incurring the computational-statistical gap. The proposed method also produces a set of estimated change points, which, coupled with a simple screening procedure, assures asymptotic consistency in change point detection under much milder assumptions. Various numerical experiments on both synthetic and real datasets also support its advantage. Supplementary materials for this article are available online.