cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/49sjvxw7jc
title: Multiple Sequence alignment of Heat Shock Proteins from different species

description: This is the MSA Heat Shock Protein 70s of Plasmodium falciparum, Human, Mouse, Bos Taurus (Bovine) , E. Coli and Pongo Abelli genomes.
DOI: 10.17632/4m8wbp93km
title: LINF_080005900

description: Protein phosphatase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/6cvk92d9gs
title: Supplementary Data

description: Research data
DOI: 10.17632/cks86467mv
title: Supplementary data for the article:  Lightella neohaematopini: A new lineage of highly reduced endosymbionts coevolving with chipmunk lice of the genus Neohaematopinus

description:  Alignments:

1. Phylogenetic matrix - concatenated matrix of 14 ortholog sequences (AA) extracted from representative set of available proteomes for each major lineage of Enterobacteriales (analyzed by PhyML, MrBayes and PhyloBayes) in a fasta format
2. Coevolutionary matrix (5 proteins) - concatenated matrix of 5 ortholog sequences (AA) extracted from 12 assemblies of L. neohaematopini (analyzed by PhyML and MrBayes) in a fasta format
3. Coevolutionary matrix (50 proteins) - concatenated matrix of 50 ortholog sequences (AA) extracted from 11 assemblies of L. neohaematopini (analyzed by PhyML) in a fasta format
4. Neisseriales matrix -  concatenated matrix of 30 ortholog sequences (AA) extracted from representative set of available proteomes for Neisseriales (analyzed by PhyML and MrBayes) in a fasta format
5. Host matrices - individual matrices for 1,107 nuclear loci from Bell et al. 2021 (analyzed by IQ-TREE) in a fasta format

Phylogenetic trees folder:
Phylogenetic trees generated by PhyML, MrBayes and PhyloBayes in a newick format.

KO numbers folder:
KO numbers generated by BLAST KOALA server for corresponding genomes.

Annotations folder:
Annotations of the genome drafts for the five best assemblies in gbk format.

Detailed description of used methods can be found in the Materials and Methods section.
DOI: 10.17632/z3566nyht8
title: biliopancreatic malignancies

description: biliopancreatic malignancies,GWAS
DOI: 10.17632/6ggmbdkghs
title: wyk-Original blots for WB-SFN-NALFD

description: Original blots for WB
DOI: 10.17632/8xyspzfwvp
title: Data for Application of Different Weighting Schemes and Stochastic Simulations to Parameterization Processes Considering Observation Error: Implications for Climate Change Impact Analysis of Integrated Watershed Models

description: Dataset in this repository includes input & output for HydroGeosphere (HGS) and Parameter Estimation (PEST) software package. In the folder A, basic input data to run HGS software and three different sets (Case 1 to Case 3) of PEST input templates(*.pst) are included. Most of HGS inputs used for 3D integrated model construction can be found in 00-Allinput folder and from ‘SB_flow.grok’ file. Inputs/outputs for PEST simulation are located in 01-flow-sim_w_Dam_PEST/00-00-PEST folder. In each pst file, weights for observation matrix based on the different weighting schemes were displayed along with other information required for PEST simulation. The outputs of PEST simulation for each test case (*.rec) can be found at the same folder as well. In the folder B, 100 cases of PEST input for the stochastic simulations are included and the output for the PEST simulation is summarized in the attached excel file. In the folder C, inputs and output for RCP predictions are summarized. All data used for the figures in the manuscript are included in the repository. To perform the simulations and visualize their results, several executables (GROK.EXE, pHGS.EXE, and HSPLOT.EXE, PEST.EXE) are required. Any additional details can be obtained from the first author (Eunhee Lee) and the software developers (www.aquanty.com & https://pesthomepage.org).
DOI: 10.17632/j2pg5xzv7n
title: SRQR CHECKLIST  Impact of COVID-19 on university students, Psychology, Behavior, and Infrastructure: The Case of Ecuador.

description: SRQR Checklist  for Reporting guidelines
DOI: 10.17632/wtxg8xbcrx
title: The Evolution of Omnichannel in Digital Era: A Bibliometric Analysis

description: Data mining from the Scopus database on publications on the topic of omnichannel from 2010 to 2023.
DOI: 10.5066/p1ypu5vn
title: Lake Erie Fish Community Data, 2013-2024

description: Assessing the distribution and abundance of both predator and prey (forage) fish species is a cornerstone of ecosystem-based fishery management and supports decision making that considers food-web interactions. In support of binational Great Lakes fishery management, the objectives of this survey were to: provide estimates of densities of key forage and predator species in the western basin of Lake Erie, to assess seasonal and spatial distributions of fishes in tandem with water quality information, and to assess year class strength. A systematic grid sampling approach with 41 stations was sampled via bottom trawl during June (Spring) and September (Autumn), starting in 2013. This data release adds 2024 data to the set for a total of twelve years observation using the same gear and sampling design.
DOI: 10.17632/49jtvcmmks
title: Enhancing Building Information Modeling Efficiency by Clash Detection and Resolution Techniques in a Sustainable Construction Approach for High-Rise Structures

description: Data Files of submission
DOI: 10.17632/92stcvhw7r
title: Teleophthalmology: A Sustainable Approach to Decarbonizing Eye Care

description: Objective: Evaluate the carbon emissions reduction from a teleophthalmology programme.
Methods: this cross-sectional study of teleophthalmology was conducted in Complejo Asistencial de Ávila, Spain. All individuals aged 18 and above who participated in teleophthalmology consultations between November 2022 and October 2023 were included in the study. Carbon emissions savings were estimated.
Results: A total of 1,011 teleophthalmology consultations were conducted at Rural Health Centers in the analyzed period. Main reasons of consultation were diabetic retinopathy screening (857 [84.82%]), arterial hypertension (87 [8.60%]) and age macular degeneration (23 [2.26%]). 138 (13.65%) required referral to a face-to-face consultation. 88,888 km driven in a private vehicle (mean [SD] 97.92 [6.70] km per visit) and a 17,422 kg CO2e emissions into the atmosphere (mean [SD] 17.23 [4.52] kg CO2e per visit) were avoided. 
Conclusions: Teleophthalmology, while contributing to the decarbonization of eye care, presents an opportunity to enhance healthcare accessibility through sustainable digitalization.
DOI: 10.17632/cmsmhw2mcs
title: EFEITO DA INCORPORAÇÃO DE FIBRAS DE CARBONO SOBRE A SENSIBILIDADE AO ENTALHE E RESISTÊNCIA AO IMPACTO DO PLA IMPRESSO

description: Anais do II Simpósio Gaúcho de Engenharia Aeroespacial e Mecânica, UFSM
Santa Maria, RS, 24 a 26 de outubro de 2023
DOI: 10.17632/d566tv5n33
title: LDHU3_18.0010

description: Kinetoplast polyadenylation/uridylation factor 1 (KPAF1); Leishmania donovani (HU3 strain)
DOI: 10.17632/v2sxzvs857
title: LINF_240016360

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/vzhfvw9yhv
title: Women's access to water in Ghana

description: This dataset was originally obtained from the Ghana Statistical Service. Extracts were made from the data to meet the objective of our project which sought to assess women’s access to water in Ghana. The data comes in three formats. One is in the SPSS format whereas the other is in Stata format. The third dataset is a shapefile which is the district boundary merged with the extracted data for spatial analysis.
DOI: 10.17632/2rj4fkhb6r
title: A c.544_618del75bp mutation in the splicing factor gene PRPF31 is involved in non-syndromic retinitis pigmentosa by reducing the level of mRNA expression

description: Figure 1. Pedigrees of Chinese families with autosomal dominant retinitis pigmentosa. (A)Pedigree of previous studies by Fei Xu et al. Arrow indicate the proband. (B)Supplementary ADRP pedigree in this study. Figure 2. Clinical images an ERG examination data of the proband. (A, B) The proband's fundus images showed that the patient had pigmentation on the fundus and the blood vessels became thinner. (C)Proband ERG examination showed that a wave b wave disappeared. Figure 3. Identification of the PRPF31 gene in family. (A)Sanger sequencing results of c.544_618del75bp site in genomic DNA. (B)Sanger sequencing results of the IVS6-78_IVS6-75del4CACA deletion site in genomic DNA. (C)Sanger sequencing results of the c.544_618del75bp site in genomic cDNA. Figure 4. SWISS MODEL predicts the three-dimensional structure of the protein encoded by the mutated PRPF31 gene. (A)Wild-type PRPF31 gene-encoded protein. (B)Mutant PRPF31 gene-encoded protein. Figure 5. Effect of PRPF31 gene c.544_618del75bp deletion mutation and other ADRP pathogenic genes on mRNA expression. (A)Relative expression level of PRPF31 gene mRNA between patients in the family and normal controls, P*&lt;0.05. (B)Relative expression levels of RP9, ROM1, SNRNP200, and TOPORS gene mRNAs between patients in the family and normal controls. P*＜0.05,P**＜0.01. (C)Correlation analysis between PRPF31 gene and RP9 gene mRNA expression level, r=0.7315，P&lt;0.001. Figure 6. In vitro functional verification of c.544_618del75 bp mutation of PRPF31 gene and other ADRP pathogenic genes. (A)Relative expression levels of PRPF31 gene mRNA in 293T cells of four experimental groups, P＜0.001. (B)Expression of 293T cells transfected with overexpression vector carrying wild-type and mutant PRPF31 genes for 24 h. VEC served the empty expression vector as a negative control. (C)Protein expression analysis of WT and mutant PRPF31 revealed by western blotting. P*＜0.05,P**＜0.01. (D)Relative expression levels of mRNA of RP9, ROM1, SNRNP200 and TOPORS genes in 293T cells of four experimental groups. Table 1. Members of the family PRPF31 gene mutation site Sanger sequencing results. Table 2. 100 healthy controls PRPF31 gene mutation site Sanger sequencing results.
DOI: 10.17632/754r78nmbm
title: A novel narrow band ultraviolet B (NB-UVB) perilesional irradiation for treating vitiligo with complete leukotrichia: A 12-week, open-label, double-arm, multicenter, randomized clinical trial

description: Background: Vitiligo is a prevalent dermatological condition wherein the loss of melanocytes leads to skin depigmentation with or without leukotrichia. Existing phototherapies can be ineffective for treating vitiligo patients with complete leukotrichia. Our modified approach of ‘NB-UVB Perilesional Irradiation’ offers a new clinical alternative for treating vitiligo patients with complete leukotrichia.
Objective: This study aimed to compare the efficacy of NB-UVB Perilesional irradiation with conventional NB-UVB therapy for repigmentation in vitiligo patients with complete leukotrichia. 
Methods: This is a 12-week, open-label, double-arm, multicenter clinical trial, with a total of 121 vitiligo patients included in the study protocol. All patients were required to have a patch of 100% white vellus hair on their body, with an area less than 1% of their body surface area. The subjects were randomly divided into two groups: one group received conventional NB-UVB irradiation (CI), while the other group received perilesional NB-UVB irradiation (PI). Both groups of patients received topical tacrolimus. The primary outcome was the mean percentage reduction in vitiligo area from baseline to week 12.
Findings: A statistically significant difference in improvement from baseline was observed in the PI group compared to the CI group (-30·8%±11·8%, -25·5%±11·05%, p=0·01) (pair-wise comparison p=0·900 at week 4, p=0·104 at week 8, p=0·01 at week 12). After subgroup analysis, patients older than 18 years old (p=0·014), with lesions on their limbs and trunk (p=0·003), or with a disease duration less than four years (p=0·029), obtained a superior efficacy of repigmentation with PI compared to CI. Meanwhile, at week 12, the average percentage change from baseline of leukotrichia in the irradiation area significantly decreased from 100% to 82·2±13·65% in the PI group, and from 100% to 88·7±9·64% in the CI group (p=0·027). Additionally, the lesions exhibited enhanced marginal repigmentation in the PI group (45/62 [72·58%]) compared to the CI group (p=0·008). Adverse events were minor, including desquamation and dryness, erythema, and blisters. No severe or lasting side effects were observed during the study.
Interpretation: PI has a better effect on the repigmentation of vitiligo with complete leukotrichia than CI and offers a valuable new therapeutic option for vitiligo patients with complete leukotrichia.
DOI: 10.17632/hm2yng94r3
title: LDHU3_17.0780

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/jn4kc64577
title: RiTe II Online Survey Data June 20

description: Raw survey data
DOI: 10.17632/w3f23bwm6m
title: The differentially expressed proteins in WT liver tissues and FetA KO liver tissues of NIAAA model mice

description: To explore the potential role of FetA in AFLD, FetA KO mice were subjected to the National Institute on Alcohol Abuse and Alcoholism (NIAAA) model for in vivo analysis. The liver protein in EtOH-fed FetA WT and KO mice was extracted. The protein of RAW data was identified and quantified by Proteome Discoverer2.5/Spectronaut16. The differentially expressed proteins in WT liver tissues and FetA KO liver tissues was identified by R/Bioconductor package limma v.3.24.15. Proteins with |Log2FC| ＞ 0.585 were included, and P &lt; 0.05 was considered significant. R-base (v.3.4.3) is used to perform calculations and visualizations. In this study, we found that FetA knockout or knockdown significantly reduced hepatic lipid droplet accumulation, oxidative stress, and inflammation in AFLD mice. FetA deletion leads to increase of autophagy flux and results in decreased TLR4 protein levels, subsequently inhibiting the NF-kB signaling pathway and the formation of pro-inflammatory M1 macrophages and then reducing the release of inflammatory cytokines. In short, our study indicates that inhibition of FetA could help prevent or reverse the progression of AFLD, and the FetA-TLR4 axis may be a target for AFLD drug development.
DOI: 10.15468/dl.t23m4v
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Desmognathus planiceps Newman, 1955)"
 ]
}

 The dataset includes 230 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025562-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/28pcwvk98k
title: Discovery of Qeqertaq Avannarleq northernmost island’ off Greenland’s coast

description: Discovery of Qeqertaq Avannarleq northernmost island’ off Greenland’s coast
DOI: 10.17632/7n5cvb7y2x
title: LDHU3_12.0250

description: Hypothetical protein - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/bmbr893c5v
title: Analytical expressions for PID controller parameters for standard transfer functions 

description: For liquid level control of coupled tank process, the following tuning rules are used to design conventional PI controller for robustness.
DOI: 10.17632/cjtts2wrhh
title: Data on anaerobic oxidation of methane and dark carbon fixation in marine sediments

description: About the data of carbon dioxide dark fixation
DOI: 10.17632/vmr9zrrgky
title: Supplementary information for "Plasma Proteomics identify Biomarkers and Pathogenesis of COVID-19"

description: Provided here are the supplementary information for the below manuscript published in Immunity entitled as "Plasma Proteomics identify Biomarkers and Pathogenesis of COVID-19".
DOI: 10.17632/vtpwddd3zv
title: Experimentally induced troilite melt pervasion in chondritic analog materials: a study for FeNi-FeS darkening in chondrites.

description: Research Data for article "Experimentally induced troilite melt pervasion in chondritic analog materials: a study for FeNi-FeS darkening in chondrites." with authors: Juulia-Gabrielle Moreau, Argo Jõeleht, Aleksandra N. Stojic, Christopher Hamann, Felix E. D. Kaufmann, P. Somelar, Jüri Plado, Satu Hietala, T. Kohout;

Published in: Meteoritics & Planetary Science

See README.TXT for more details on the content.
DOI: 10.17632/zszs7hg9xh
title: Policy Reforms to Enhance Scholarship Accessibility for Economically Disadvantaged Students

description: In most educational institutions, scholarships are awarded only after a student has secured admission, necessitating the availability of funds to cover initial admission costs. This policy poses a significant barrier to bright students from low-income backgrounds, who may be unable to afford these upfront fees and, consequently, miss the opportunity to apply for scholarships. This paper proposes a series of policy reforms aimed at mitigating these financial obstacles and ensuring that deserving students have equitable access to higher education.
DOI: 10.17632/bng79xc6pc
title: EAT program

description: EAT program
DOI: 10.17632/gd6bn5dvjp
title: Mammal Species Inventory Blouberg Nature Reserve

description: SnapshotSafari is a transnational program aiming at providing a greater knowledge about mammal populations across southern Africa. Thanks to standardized camera traps (CTs) grid, deployed in various locations reflecting a diversity of conservation states (from protected areas to highly transformed areas), SnapshotSafari aims at describing mammal population abundances, diversities and spatial occurrences. The data provided will benefit Research, in fields as broad as Genetics, Ecology or conservation Biology, as well by providing to conservation planning a comprehensive synthesis of which species can be found in their location, with which abundance...etc. The project is coordinated in South Africa by Nelson by Mandela University’s Wildlife Ecology Lab. The images collected by the CTs (as much as thousands per site) are sent to the United States (University of Minnesota) to be processed via a participative science plateform (Zooniverse) and machine learning (a popular IT field that allows automatized recognition of elements in an image, for instance antelopes in a landscape photo).
DOI: 10.17632/m3x5pck2yz
title: LDHU3_09.0970

description: Oligopeptidase b | Serine peptidase Clan SC Family S9A; Leishmania donovani (HU3 strain)
DOI: 10.17632/m9bwn8z2pr
title: COVID-19 and the adoption of digital banking in Vietnam

description: Survey Data_How COVID-19 boosting the adoption of digital banking in Vietnam
DOI: 10.17632/2w32sp7gc9
title: LINF_190016900

description: Tripartite attachment complex protein 197
Leishmania infantum (strain JPCM5)
DOI: 10.17632/3grzxcymnr
title: Tilapia Sausage Degradation

description: Degradação de embutidos de tilapia
DOI: 10.17632/3mwt9s3vkr
title: System decay over time

description: If we consider a graph representing the learning outcomes or progress over time, it might align with the concept of impermanence or change in educational contexts.
The graph could showcase the evolution of student learning or mastery of course material over the duration of a term or course. Initially, at the start (t=0), students might have varying levels of understanding or competence, represented by different points on the graph.

As learning progresses over time, the graph would ideally depict an upward trend, indicating improvement or growth in knowledge and skills. However, this growth might not always be linear; there could be fluctuations or variations in the learning curve, symbolizing the transient nature of learning.

The graph might exhibit periods of rapid improvement (steeper slopes) where new concepts are introduced or understood quickly, followed by plateaus or slower growth phases. These plateaus or fluctuations can represent the moments when understanding stabilizes or when the learning process temporarily slows down.

At the end of the term or course, the graph might show a higher average level of learning or competency compared to the beginning. However, the key concept of impermanence comes into play here: once the course concludes, the learning curve might start to decline or level off if the knowledge isn't consistently reinforced or applied.
DOI: 10.17632/c2fhrg3tfh
title: LINF_350030200

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/g2n5z4fd9v
title: LINF_290019300

description: RNA-binding protein | DRBD6A; Leishmania infantum (strain JPCM5)
DOI: 10.17632/gnvtp62dfh
title: Nullijn, a program to calculate zero curves of a function of two variables of which one may be complex

description: Title of program: NULLIJN Catalogue Id: ACYL_v1_0 Nature of problem When an algorithm for a function f of two variables, for instance a dispersion function f(w,k) or a potential V(r,z) is known, the program calculates and plots the zero curves, thus giving a graphical representation of an implicitly defined function. One of the variables may be complex. Versions of this program held in the CPC repository in Mendeley Data ACYL_v1_0; NULLIJN; 10.1016/0010-4655(78)90066-8 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/w78gnx5rrk
title: Physiochemical Properties of bHLH Transcription Factor Proteins of Grapes.

description: Bio-computational analysis revealed uneven distribution of 140 bHLH protein encoding genes through out the plant genome. Bash scripts was used to process and assemble the information under captions TF Name, Peptide Sequence, Length, Aromaticity, GRAVY, pI, M.w and Ins. index. which is given here.
DOI: 10.17632/wtmm54dmdv
title: Fitness benefits to intrasexual aggression in female house wrens

description: In this study we addressed four questions about female intrasexual aggression in house wrens (Troglodytes aedon): (1) Does intrasexual aggression help females during periods of elevated competition over breeding resources?, (2) Do aggressive females have higher quality mates?, (3) Do aggressive females invest less in reproduction?, and (4) Does female aggression affect offspring growth and survival? We found that aggressive females protected more eggs from ovicide during experimentally enhanced competition. Aggressive females did not invest less in egg production. Aggressive females had mates that fed offspring more often and they fed offspring more frequently themselves. Offspring of more aggressive females were heavier at multiple points in development and more likely to survive to fledging. Experimental details can be found in Krieg, CA, Getty, T. 2020. Fitness benefits to intrasexual aggression in female house wrens, Troglodytes aedon. Animal Behaviour 160:79-90. doi.org/10.1016/j.anbehav.2019.12.001. data.set.legend: descriptions for all variables in all data sets pca.all.data: Behaviors during simulated intrusions that contributed to the principal component analysis for male and female house wrens. takeover.data: Principal component 1 scores during previous simulated female intrusions for females involved in territory takeovers. PC1 scores during the heterospecific trial are included for comparison. fitness.ben.data: All other data used to conduct the analyses in this manuscript. Includes data on responses during simulated territorial intrusions and various measures of reproductive success.
DOI: 10.17632/42jhv6p353
title: LINF_100009700

description: hypothetical protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/7x3yz9sn46
title: LDHU3_16.1170

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)