cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16419153.v1
title: Interproscane of genes in identified operons

description: Interproscan, runned Pfam database, results. Only results from genes kept after proximity filtration are availible.<br>
DOI: 10.5281/zenodo.5242975
title: Data and Codes used in the study: Very high frequency oscillations in the main peak of a magnetar giant flare

description: Description is given in the uploaded pdf document: Data_codes_description.pdf
DOI: 10.5281/zenodo.5242974
title: Data and Codes used in the study: Very high frequency oscillations in the main peak of a magnetar giant flare

description: Description is given in the uploaded pdf document: Data_codes_description.pdf
DOI: 10.5281/zenodo.5242951
title: Microscopy images of the DNA and RNA polymerase II distribution inside nuclei of cell cultures obtained from pluripotent zebrafish embryos

description: <strong>Image data description</strong> Color channels in the image data: First channel: DNA (Hoechst 33342) Second channel: Pol II Ser2P (Elongating RNA polymerase II, indirect immunofluorescence, STAR RED) Third channel: Pol II Ser5P (Recruited RNA polymerase II, indirect immunofluorescence, Alexa 594) <strong>Sample description</strong> Praimary cell cultures were prepared from pluripotent zebrafish embryos were collected at the sphere stage of development, treated with chemical inhibitors of transcription (Control, 500 mM Flavopiridol, 500 mM Triptolide, all for 30 min) and fixed overnight (2% formaldehyde in culutre media, 30 min, room temperature; followed by 8% formaldehyde for 15 min at room temperature). RNA polymerase in the recruited state (Pol II Ser5P) and the elongating state (Pol II Ser2P) were labeled by indirect immunofluorescence (permeabilization 0.5% Triton X-100 in PBS 15 min room temperature, 30 min blocking 4% BSA in PBST, rat IgG anti-Pol II Ser5P & rabbit IgG anti-Pol II Ser2P in 4% BSA in PBST overnight 4°C, anti-rat Alexa 594 & anti-rabbit STAR RED in 4% BSA in PBST overnight 4°C). Mounted in VectaShield H-1000 with 2 µM Hoechst 33342 added for fluorescent DNA labeling. Scan of lab book page is included in the repository. The data set contains images obtained from two samples for each condition. <strong>Imaging</strong> Microscopy images acquired using VisiTech iSIM with dual camera setup. Objective Nikon CFI SR HP Apo<br> TIRF 100XAC Oil, color channels acquired in a sequence to reduce overlap (DNA + Ser2P acquired simultaneously on two camerase, Ser5P acquired after on a single camera), z-stack settings optimized to ensure reliable xyz alignment of channels. Imags were cropped to the region with best signal and resolution in the DNA channel, same region used throughout the entire dataset. all imaging settings were kept unchanged over the course of acquisition, all images acquired in a single session of 4 hours. <strong>Advice for image processing</strong> Images can be loaded for processing with the OME bioformats importer. An import script for MatLab is available through the Hilbert lab: https://github.com/lhilbert/NuclearObjects_ImageAnalysis <strong>Author contributions</strong> AN & MS provided embryos, carried out cell culture, and prepared samples, LH performed microscopy
DOI: 10.6084/m9.figshare.15738219
title: Results from PSI-BLAST search

description: Results from PSI-BLAST using specified query sequences on the HQ-MAG databse from singleton et al. <br><br>PSI-BLAST parameters are availible from article Github. https://github.com/SorenHeidelbach/EPS_synthesis_in_AS_bacteria/blob/main/scripts/shell/psiblast.sh<br>
DOI: 10.6084/m9.figshare.15738219.v1
title: Results from PSI-BLAST search

description: Results from PSI-BLAST using specified query sequences on the HQ-MAG databse from singleton et al. <br><br>PSI-BLAST parameters are availible from article Github. https://github.com/SorenHeidelbach/EPS_synthesis_in_AS_bacteria/blob/main/scripts/shell/psiblast.sh<br>
DOI: 10.6084/m9.figshare.15735669
title: Meta information of query operons genes (Query_figur.xlsx)

description: Information about each gene used as a query. <br>
DOI: 10.6084/m9.figshare.15735669.v1
title: Meta information of query operons genes (Query_figur.xlsx)

description: Information about each gene used as a query. <br>
DOI: 10.6084/m9.figshare.15735006
title: Assembly statistics and taxonomy of HQ-MAGs (magstats.tsv)

description: Statistics of the HQ-MAGs in the database generated by singleton et al. <br><br>This file is primarily used to couple taxonomic information of the mags to the results<br>
DOI: 10.6084/m9.figshare.15735006.v1
title: Assembly statistics and taxonomy of HQ-MAGs (magstats.tsv)

description: Statistics of the HQ-MAGs in the database generated by singleton et al. <br><br>This file is primarily used to couple taxonomic information of the mags to the results<br>
DOI: 10.6084/m9.figshare.15734367
title: HQ-MAG protein annotation metadata (gff.tsv)

description: Gene location of target genes in HQ-MAG database from singleton et al. <br><br>Essential for gene distance og gene order in the proximity criterion.<br>
DOI: 10.6084/m9.figshare.15734367.v1
title: HQ-MAG protein annotation metadata (gff.tsv)

description: Gene location of target genes in HQ-MAG database from singleton et al. <br><br>Essential for gene distance og gene order in the proximity criterion.<br>
DOI: 10.6084/m9.figshare.15261906
title: Supplemental Information S10: Simple muscle twitch LabChart data file

description: LabChart data file of simple muscle twitch experiment. The file can be opened using LabChart reader provided freely by ADInstruments, Australia at: https://www.adinstruments.com/products/labchart-reader.
DOI: 10.6084/m9.figshare.15261906.v3
title: Supplemental Information S9: Simple muscle twitch LabChart data file

description: LabChart data file of simple muscle twitch experiment. The file can be opened using LabChart reader provided freely by ADInstruments, Australia at: https://www.adinstruments.com/products/labchart-reader.
DOI: 10.6084/m9.figshare.15372378
title: Supplemental Information S11: Quantal summation LabChart data file

description: LabChart data file of quantal summation experiment. The file can be opened using LabChart reader provided freely by ADInstruments, Australia at: https://www.adinstruments.com/products/labchart-reader.
DOI: 10.6084/m9.figshare.15372378.v2
title: Supplemental Information S11: Quantal summation LabChart data file

description: LabChart data file of quantal summation experiment. The file can be opened using LabChart reader provided freely by ADInstruments, Australia at: https://www.adinstruments.com/products/labchart-reader.
DOI: 10.6084/m9.figshare.15372378.v1
title: Supplemental Information S10: Quantal summation LabChart data file

description: LabChart data file of quantal summation experiment. The file can be opened using LabChart reader provided freely by ADInstruments, Australia at: https://www.adinstruments.com/products/labchart-reader.
DOI: 10.6084/m9.figshare.15377112.v1
title: Supplemental Information S11: Effect of two successive stimulation experiment LabChart data file

description: LabChart data file of effect of two successive stimulation experiment. The file can be opened using LabChart reader software provided freely by ADInstruments, Australia at https://www.adinstruments.com/products/labchart-reader.
DOI: 10.6084/m9.figshare.15390894
title: Supplemental Information S13: Tetanus experiment LabChart data file

description: LabChart data file of tetanus experiment. The file can be opened using LabChart reader provided freely by ADInstruments, Australia at https://www.adinstruments.com/products/labchart-reader.
DOI: 10.6084/m9.figshare.15390894.v2
title: Supplemental Information S13: Tetanus experiment LabChart data file

description: LabChart data file of tetanus experiment. The file can be opened using LabChart reader provided freely by ADInstruments, Australia at https://www.adinstruments.com/products/labchart-reader.
DOI: 10.6084/m9.figshare.15390894.v1
title: Supplemental Information S12: Tetanus experiment LabChart data file

description: LabChart data file of tetanus experiment. The file can be opened using LabChart reader provided freely by ADInstruments, Australia at https://www.adinstruments.com/products/labchart-reader.
DOI: 10.6084/m9.figshare.15394569
title: Supplemental Information S14: Treppe experiment LabChart data file

description: LabChart data file of treppe experiment. The file can be opened by using LabChart reader provided freely by ADInstruments, Australia at https://www.adinstruments.com/products/labchart-reader.
DOI: 10.6084/m9.figshare.15394569.v1
title: Supplemental Information S13: Treppe experiment LabChart data file

description: LabChart data file of treppe experiment. The file can be opened by using LabChart reader provided freely by ADInstruments, Australia at https://www.adinstruments.com/products/labchart-reader.
DOI: 10.6084/m9.figshare.15405177
title: Supplemental Information S15: Fatigue and recovery experiment LabChart data file

description: LabChart data file of fatigue and recovery experiment. The file can be opened by using LabChart reader provided freely by ADInstruments, Australia at https://www.adinstruments.com/products/labchart-reader.
DOI: 10.6084/m9.figshare.15405177.v1
title: Supplemental Information S14: Fatigue and recovery experiment LabChart data file

description: LabChart data file of fatigue and recovery experiment. The file can be opened by using LabChart reader provided freely by ADInstruments, Australia at https://www.adinstruments.com/products/labchart-reader.
DOI: 10.5281/zenodo.5242901
title: Data on the Swiss energy system and electric vehicles

description: This repository gathers the data used in the paper: Loris Di Natale, Luca Funk, Martin Rüdisüli, Bratislav Svetozarevic, Giacomo Pareschi, Philipp Heer and Giovanni Sansavini. <strong>The Potential of Vehicle-to-Grid to Support the Energy Transition: A Case Study on Switzerland. </strong><em>Energies.</em> 2021; 14(16):4812. https://doi.org/10.3390/en14164812. The linked code can be found here. Small description of the different files: <em>Car_trips.csv:</em> List of trips from different cars in Switzerland.<br> Data provided by Giacomo Pareschi and based on the result of the 2015 edition of MZMV (Bundesamt für Statistik / Bundesamt für Raumentwicklung, Verkehrsverhalten der Bevölkerung, Ergebnisse des Mikrozensus Mobilität und Verkehr 2015, Neuchâtel und Bern (2017), https://www.are.admin.ch/are/de/home/mobilitaet/grundlagen-und-daten/mzmv.html ). Each weekly profile is not representative and any result obtained with less than 50 profiles should be interpreted with extreme caution. <em>ch.bfe.ladestellen-elektromobilitaet.json:</em> Data on the charging stations in Switzerland.<br> Online data from the Swiss Federal Office of Energy. <em>cs_power_Home.csv</em> and<em> cs_power_Work.csv: </em>Own data on the charging powers of charging stations located at home or at work. <em>energy_system_model_empa_results_sc_1.csv: </em>Swiss Energy System model used in our work to generate the fixed hydropower output profile.<br> Data provided by Dr. Martin Rüdisüli. <em>EVs_cap.csv:</em> Data on different EV brands, from own research. <em>gCO2_eq_kWh_techs.csv: </em>CO2-equivalent greenhouse gas emission factors for different technologies, from own research. <em>Heat_BEV_demand_2018.csv:</em> Electricity demand for heating and EVs in Switzerland.<br> Data provided by Dr. Martin Rüdisüli. <em>inflows_Beer.csv: </em>Data on the water inflows in the Swiss dams over the year.<br> Data provided by Michael Beer, from Beer, M. Abschätzung des Potenzials der Schweizer Speicherseen zur Lastdeckung bei Importrestriktionen. Z. Energiewirtschaft <strong>2018</strong>, 42, 1–12. <em>MeteoSchweiz_pop_weight_2018.csv:</em> Temperature data in Switzerland taken from MeteoSwiss and population-weighted.<br> Data provided by Dr. Martin Rüdisüli. <em>Scenarios.csv </em>and <em>Scenarios+.csv: </em>Different scenarios for electricity production and consumption, generated in-house based on the Energy Strategy 2050 (Kirchner, A.; Bredow, D.; Ess, F.; Grebel, T.; Hofer, P.; Kemmler, A.; Ley, A.; Piégsa, A.; Schütz, N.; Strassburg, S.; et al. Energy Perspectives, Die Energieperspektiven für die Schweiz bis 2050; Prognos AG: Basel, Switzerland, 2012), respectively the Energy Strategy 2050+ (Prognos AG and INFRAS AG and TEP Energy GmbH and Ecoplan AG. ENERGIEPERSPEKTIVEN 2050+ Kurzbericht. 2020). <em>transfer_15min_2018.csv: </em>Swiss power system model of electricity production and consumption in 2018.<br> Data provided by Dr. Martin Rüdisüli.
DOI: 10.5281/zenodo.5242900
title: Data on the Swiss energy system and electric vehicles

description: This repository gathers the data used in the paper: Loris Di Natale, Luca Funk, Martin Rüdisüli, Bratislav Svetozarevic, Giacomo Pareschi, Philipp Heer and Giovanni Sansavini. <strong>The Potential of Vehicle-to-Grid to Support the Energy Transition: A Case Study on Switzerland. </strong><em>Energies.</em> 2021; 14(16):4812. https://doi.org/10.3390/en14164812. The linked code can be found here. Small description of the different files: <em>Car_trips.csv:</em> List of trips from different cars in Switzerland.<br> Data provided by Giacomo Pareschi and based on the result of the 2015 edition of MZMV (Bundesamt für Statistik / Bundesamt für Raumentwicklung, Verkehrsverhalten der Bevölkerung, Ergebnisse des Mikrozensus Mobilität und Verkehr 2015, Neuchâtel und Bern (2017), https://www.are.admin.ch/are/de/home/mobilitaet/grundlagen-und-daten/mzmv.html ). Each weekly profile is not representative and any result obtained with less than 50 profiles should be interpreted with extreme caution. <em>ch.bfe.ladestellen-elektromobilitaet.json:</em> Data on the charging stations in Switzerland.<br> Online data from the Swiss Federal Office of Energy. <em>cs_power_Home.csv</em> and<em> cs_power_Work.csv: </em>Own data on the charging powers of charging stations located at home or at work. <em>energy_system_model_empa_results_sc_1.csv: </em>Swiss Energy System model used in our work to generate the fixed hydropower output profile.<br> Data provided by Dr. Martin Rüdisüli. <em>EVs_cap.csv:</em> Data on different EV brands, from own research. <em>gCO2_eq_kWh_techs.csv: </em>CO2-equivalent greenhouse gas emission factors for different technologies, from own research. <em>Heat_BEV_demand_2018.csv:</em> Electricity demand for heating and EVs in Switzerland.<br> Data provided by Dr. Martin Rüdisüli. <em>inflows_Beer.csv: </em>Data on the water inflows in the Swiss dams over the year.<br> Data provided by Michael Beer, from Beer, M. Abschätzung des Potenzials der Schweizer Speicherseen zur Lastdeckung bei Importrestriktionen. Z. Energiewirtschaft <strong>2018</strong>, 42, 1–12. <em>MeteoSchweiz_pop_weight_2018.csv:</em> Temperature data in Switzerland taken from MeteoSwiss and population-weighted.<br> Data provided by Dr. Martin Rüdisüli. <em>Scenarios.csv </em>and <em>Scenarios+.csv: </em>Different scenarios for electricity production and consumption, generated in-house based on the Energy Strategy 2050 (Kirchner, A.; Bredow, D.; Ess, F.; Grebel, T.; Hofer, P.; Kemmler, A.; Ley, A.; Piégsa, A.; Schütz, N.; Strassburg, S.; et al. Energy Perspectives, Die Energieperspektiven für die Schweiz bis 2050; Prognos AG: Basel, Switzerland, 2012), respectively the Energy Strategy 2050+ (Prognos AG and INFRAS AG and TEP Energy GmbH and Ecoplan AG. ENERGIEPERSPEKTIVEN 2050+ Kurzbericht. 2020). <em>transfer_15min_2018.csv: </em>Swiss power system model of electricity production and consumption in 2018.<br> Data provided by Dr. Martin Rüdisüli.
DOI: 10.6084/m9.figshare.15409080
title: Supplemental Information S16: Length-tension relationship experiment LabChart data file

description: LabChart data file of length-tension relationship experiment. The file can be opened using LabChart reader provided freely by ADInstruments, Australia at https://www.adinstruments.com/products/labchart-reader.
DOI: 10.6084/m9.figshare.15409080.v2
title: Supplemental Information S15: Length-tension relationship experiment LabChart data file

description: LabChart data file of length-tension relationship experiment. The file can be opened using LabChart reader provided freely by ADInstruments, Australia at https://www.adinstruments.com/products/labchart-reader.
DOI: 10.6084/m9.figshare.16419204
title: Therapeutic melanoma inhibition by local micelle-mediated cyclic nucleotide repression - Source data underlying all figures and supplementary figures

description: Source data underlying all figures and supplementary figures
DOI: 10.6084/m9.figshare.16419204.v1
title: Therapeutic melanoma inhibition by local micelle-mediated cyclic nucleotide repression - Source data underlying all figures and supplementary figures

description: Source data underlying all figures and supplementary figures
DOI: 10.6084/m9.figshare.16419210
title: Complete data

description: Zipped folder with all required information to run analasys. <br><br>Just unzip and place the data folder inside the folder pulled from the Github repo: https://github.com/SorenHeidelbach/EPS_synthesis_in_AS_bacteria.<br>Make sure data folder is at the same level as main.R<br>
DOI: 10.6084/m9.figshare.16419210.v2
title: Complete data

description: Zipped folder with all required information to run analasys. <br><br>Just unzip and place the data folder inside the folder pulled from the Github repo: https://github.com/SorenHeidelbach/EPS_synthesis_in_AS_bacteria.<br>Make sure data folder is at the same level as main.R<br>
DOI: 10.6084/m9.figshare.16419210.v1
title: Complete dataset required

description: Zipped folder with all required information to run analasys. <br><br>Just unzip and place the data folder inside the folder pulled from the Github repo: https://github.com/SorenHeidelbach/EPS_synthesis_in_AS_bacteria.<br>Make sure data folder is at the same level as main.R<br>
DOI: 10.5281/zenodo.4770527
title: Simulating PIP2-induced gating transitions in Kir6.2 channels

description: Supplemental material to the study "Simulating PIP2-induced gating transitions in Kir6.2 channels", to be published in a Frontiers journal. The upload contains three representative Molecular Dynamics simulation data sets, as described in the paper (6C3O, 6C3P, 6C3P L164P), comprising a compressed Gromacs .xtc, a .tpr, and the final step as .gro file, respectively.
DOI: 10.5281/zenodo.4770526
title: Simulating PIP2-induced gating transitions in Kir6.2 channels

description: Supplemental material to the study "Simulating PIP2-induced gating transitions in Kir6.2 channels", to be published in a Frontiers journal. The upload contains three representative Molecular Dynamics simulation data sets, as described in the paper (6C3O, 6C3P, 6C3P L164P), comprising a compressed Gromacs .xtc, a .tpr, and the final step as .gro file, respectively.
DOI: 10.5517/ccdc.csd.ccrbsmg
title: CCDC 695566: Experimental Crystal Structure Determination

description: Related Article: Chen Hong, Chen You-Cun, Cheng Le-Hua, Tang Jia-Hua|2012|Guangpu Shiyanshi|29|3614|
DOI: 10.5517/ccdc.csd.cc28gq7q
title: CCDC 2099513: Experimental Crystal Structure Determination

description: Related Article: Rempei Ando, Mingoo Jin, Hajime Ito|2021|CrystEngComm|23|5564|doi:10.1039/D1CE00726B
DOI: 10.15161/oar.it/74044
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.21942/uva.15183282
title: Cartel stability in experimental first-price and English auctions

description: Raw data for "Cartel stability in experimental first-price and English auctions" by Hinloopen, Onderstal, and Treuren (2020). Published in the International Journal of Industrial Organization. .do file contains main analysis. See the paper for details.
DOI: 10.21942/uva.15183282.v1
title: Cartel stability in experimental first-price and English auctions

description: Raw data for "Cartel stability in experimental first-price and English auctions" by Hinloopen, Onderstal, and Treuren (2020). Published in the International Journal of Industrial Organization. .do file contains main analysis. See the paper for details.
DOI: 10.6084/m9.figshare.15377112
title: Supplemental Information S12: Effect of two successive stimulation experiment LabChart data file

description: LabChart data file of effect of two successive stimulation experiment. The file can be opened using LabChart reader software provided freely by ADInstruments, Australia at https://www.adinstruments.com/products/labchart-reader. The inter-pulse interval was changed by changing the frequency of stimulation between the two stimuli from 2 Hz-1000 Hz.
DOI: 10.6084/m9.figshare.15377112.v3
title: Supplemental Information S12: Effect of two successive stimulation experiment LabChart data file

description: LabChart data file of effect of two successive stimulation experiment. The file can be opened using LabChart reader software provided freely by ADInstruments, Australia at https://www.adinstruments.com/products/labchart-reader. The inter-pulse interval was changed by changing the frequency of stimulation between the two stimuli from 2 Hz-1000 Hz.
DOI: 10.5281/zenodo.5230562
title: Functional redundancy of non-volant small mammals increases in human-modified habitats

description: This repository hosts all R codes, data and output supporting the findings of the study "Functional redundancy of non-volant small mammals increases in human-modified habitats", by André L. Luza (UFRGS, BR), Catherine H. Graham (WSL, CH), Sandra M. Hartz (UFRGS, BR), and Dirk, N. Karger (WSL, CH). The only data that are not here are the Ecoregions of WWF. These data can be found in the webpage of WWF.
description: {"references": ["Luza et al. 2019. A global database on non-volant small mammal composition in natural and human-modified habitats. Data in Brief, 23: 103842", "Hudson et al. 2017. The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project. Ecollogy and Evolution, 7(1): 45-188"]}
DOI: 10.5281/zenodo.5230561
title: Functional redundancy of non-volant small mammals increases in human-modified habitats

description: This repository hosts all R codes, data and output supporting the findings of the study "Functional redundancy of non-volant small mammals increases in human-modified habitats", by André L. Luza (UFRGS, BR), Catherine H. Graham (WSL, CH), Sandra M. Hartz (UFRGS, BR), and Dirk, N. Karger (WSL, CH). The only data that are not here are the Ecoregions of WWF. These data can be found in the webpage of WWF.
description: {"references": ["Luza et al. 2019. A global database on non-volant small mammal composition in natural and human-modified habitats. Data in Brief, 23: 103842", "Hudson et al. 2017. The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project. Ecollogy and Evolution, 7(1): 45-188"]}
DOI: 10.5281/zenodo.5243189
title: Italian DBnary archive in original Lemon format

description: The DBnary dataset is an extract of Wiktionary data from many language editions in RDF Format. Until July 1st 2017, the lexical data extracted from Wiktionary was modeled using the lemon vocabulary. This dataset contains the full archive of all DBnary dumps in Lemon format containing lexical information from Italian language edition, ranging from 27th August 2012 to 1st July 2017. After July 2017, DBnary data has been modeled using the ontolex model and will be available in another Zenodo entry.