cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/hngmhmh8cx
title: Pyg4ometry: A Python library for the creation of Monte Carlo radiation transport physical geometries

description: Creating and maintaining computer-readable geometries for use in Monte Carlo Radiation Transport (MCRT) simulations is an error-prone and time-consuming task. Simulating a system often requires geometry from different sources and modelling environments, including a range of MCRT codes and computer-aided design (CAD) tools. Pyg4ometry is a Python library that enables users to rapidly create, manipulate, display, debug, read, and write Geometry Description Markup Language (GDML)-based geometry used in MCRT simulations. Pyg4ometry provides importation of CAD files to GDML tessellated solids, conversion of GDML geometry to FLUKA and conversely from FLUKA to GDML. The implementation of Pyg4ometry is explained in detail in this paper and includes a number of small examples to demonstrate some of its capabilities. The paper concludes with a complete example using most of Pyg4ometry's features and a discussion of possible extensions and future work.
DOI: 10.17632/jcsz2ptp6z
title: UNVEILING THE EDUCATIONAL LANDSCAPE OF MURSHIDABAD DISTRICT DURING THE COLONIAL ERA: AN IN-DEPTH HISTORICAL ANALYSIS

description: Abstract: 
When thinking about India's past, one must include Murshidabad. During the Middle Ages, Bengal's capital was Murshidabad. Both culturally and industrially, Karnasubarna of Murhsidabad was significant in the ancient world. The autonomous Nawabs of Bengal in the last Mughal era were the cultural and political focal points of this. Murshidabad was also the starting point for British authority in India after the Plassey and Baxa battles. English education began in Murshidabad as a consequence of this, which caused a major shift in the city's educational system as well as its economic and political structures. The zamindars and rulers of India, together with Christian missionaries, played an important role in the dissemination of modern education in Murshiadabad.
DOI: 10.6084/m9.figshare.21393267.v1
title: Assessment of Cognitive Impairment in Survivors of Breast Cancer: A Cross-sectional Study

description: Abstract Prospective and cross-sectional study to determine the prevalence of cognitive impairment resulting from chemotherapy, and to explore predictors and mediators in survivors of breast cancer. We used the Distress Thermometer, Hospital Anxiety and Depression Scale, Functional Assessment of Chronic Illness Therapy-General and Functional Assessment of Cancer Therapy-Cognitive Function. Survivors (N = 62) reported a high prevalence of distress (46.8%) and anxiety (24.2%), with low scores on cognitive deficit and cognitive skills perceived subscales. Cognitive functioning was associated with age (β = 1.42; p = 0.002), professional performance (β = -23.12; p = 0.004), depression (β = -5.43; p = 0.001), and quality of life (β = 1.24; p = 0.001). Cognitive impairment must be considered in Psycho-Oncology service.
DOI: 10.17632/nz35b7b26d
title: Elewski et al. Supplementary data

description: Supplementary material for the manuscript "Rapid and sustained improvements in GPPGA scores with spesolimab for treatment of generalized pustular psoriasis flares in the randomized, placebo-controlled Effisayil 1 study" by Boni Elewski et al. 2023, Journal of the American Academy of Dermatology
DOI: 10.17632/zccbr7djwv
title: Sediment nitrate reduction rates in Curonian, Vistula and Oder lagoons

description: The data file shows novel, previously unpublished data on:
- sediment denitrification rates
- sediment denitrification fuelled by NO3- from bottom water (Dw)
- sediment denitrification fuelled by NO3- produced via nitrification (Dn)
- sediment Dissimilatory nitrate reduction to ammonium rates (DNRA)
- sediment DNRA fuelled by NO3- from bottom water (DNRAw)
- sediment DNRA fuelled by NO3- produced via nitrification (DNRAn)
Sediment samples were collected from three European lagoons (Curonian, Vistula and Oder) in 2022 and 2023.
DOI: 10.6084/m9.figshare.1200118.v2
title: Berea Sandstone

description: Micro-Computed Tomography (micro-CT) segmented image of Berea Sandstone. The micro-CT image is segmented according to the variation of grey values between grains (bright- 255 grey value) and pores (dark- 0 grey value) using the watershed segmentation algorithm in the Avizo software. Details of the images (voxel resolution and image size) is present as a text file. The image can be visualized in visualization software such as Fiji ((http://fiji.sc/Fiji) or Avizo. If you utilise this in a scientific publication then please mention in the acknowledgements that this data is courtesy of Qatar Carbonates and Carbon Storage Research Centre, Imperial College London. For more information, please contact Saurabh M Shah at saurabh.shah10@imperial.ac.uk or Edo S Boek at e.boek@imperial.ac.uk
DOI: 10.6084/m9.figshare.24565681.v1
title: Retinal Image Dataset of Infants and ROP Divided into Patients' Folders

description: Dataset with subfolder containing the real patient’s images taken on the same day from the same patient. Such a division is a user-oriented solution enabling, e.g. educators, quick orientation in the database.
DOI: 10.6084/m9.figshare.27873657.v1
title: Springer Nature Social Media Survey 2024

description: The main driver for this survey project was to update and refresh Springer Nature's last comprehensive global survey on researchers’ use of social media, which was conducted in 2019. This survey focuses on researchers' discovery of research content and news, as well as communications and promotion of research content. There have also been well-documented changes in the social media landscape. Perhaps the most notable are developments at Twitter, now X, which were reported as “seeding angst and uncertainty” amongst researchers in a 2023 Nature survey targeting existing Twitter users.This survey was ambitious, as it tried to cover a huge range of questions Springer Nature has about social media in the context of researchers and their research. Authored by Kunyao Zhu and Farah Aldabbagh.
DOI: 10.17632/62cyywhx4d
title: Stress and Sleep Patterns in a University at South of India

description: The dataset was collected from a technical university in Tamil Nadu, India. The sleep and stress patterns of students studying in the university is collected based on various situations.
DOI: 10.6084/m9.figshare.28045016.v1
title: aBiofilm dataset

description: aBiofilm dataset
DOI: 10.6084/m9.figshare.11618346.v1
title: Full eyes sample

description: Flye eyes are stored in folders according to the SCA1 (spinocerebelous ataxia 1) genetic background:<br>1_gmr_YW --&gt; WT (wild type, yellow white)2_gmr_Sca_YW --&gt; WTxSCA (wild type x SCA1)3_gmr_Sca_Mod1 --&gt; SCAxEP3100 (SCA x Modifier #1 EP3100)4_gmr_Sca_Mod2 --&gt; SCAxGLaz (SCA x Modifier #2 GLaz)5_gmr_Sca_Mod3 --&gt; SCAxNLazB54 (SCA x Modifier #3 NLaz)6_gmr_Sca --&gt; SCA (SCA)<br>Within each folder you can find the original eye pictures and the two sets of ROIs obtained through the detection protocol described in the paper.
DOI: 10.6084/m9.figshare.1517809.v1
title: Transparent Data Encryption – Security of Database Using Microsoft SQL Server 2008 and Oracle

description: Abstract<br>Present day global business environment presents numerous security threats and compliance challenges. To protect against data thefts and frauds we require security solutions that are<br>transparent by design. The present study deals with Transparent Data Encryption which is a technology used to solve the problems of security of data. Transparent Data Encryption means encrypting<br>databases on hard disk and on any backup media. Transparent Data Encryption provides transparent, standards-based security that protects data on the network, on disk and on backup media.<br>It is easy and effective protection of stored data by transparently encrypting data. Transparent Data Encryption can be used to provide high levels of security to columns, table and tablespace<br>that is database files stored on hard drives or floppy disks or CD’s, and other information that requires protection. It is the technology used by Microsoft SQL Server 2008, Oracle 10g and 11g to encrypt database contents. The term encryption means the<br>piece of information encoded in such a way that it can only be decoded read and understood by people for whom the information is intended. The study deals with ways to create Master Key, creation of certificate protected by the master key, creation of<br>database master key and protection by the certificate and ways to set the database to use encryption in Microsoft SQL Server 2008,<br>Oracle 10g and 11g.
DOI: 10.6084/m9.figshare.25909453.v1
title: Drainage crossing Detection data

description: This dataset contains drainage crossings derived from four watersheds.
DOI: 10.6084/m9.figshare.28719122.v1
title: Amphidinium carterae genome

description: Amphidinium carterae genome assembly generated from Oxford Nanopore long-reads using flye assembler
DOI: 10.6084/m9.figshare.3523298.v1
title: Appendix A. Descriptions of the databases and species used in this study.

description: Descriptions of the databases and species used in this study.
DOI: 10.6084/m9.figshare.746922.v1
title: ESM for Chapter Seven

description: These files are the electronic supplimentary material for chapter seven of my doctoral thesis.
DOI: 10.17632/8s5xyhrxk9
title: SuperIso v2.3: A program for calculating flavor physics observables in supersymmetry

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We describe SuperIso v2.3 which is a public program for evaluation of flavor physics observables in the minimal supersymmetric extension of the Standard Model (MSSM). SuperIso v2.3, in addition to the isospin asymmetry of B → K ∗ γ , which was the main purpose of the first version, incorporates new flavor observables such as the branching ratio of B s → μ + μ − , the branching ratio of B → τ ν τ , the branching ratio of B → D τ ν τ and the branching ratio of K → μ ν μ . The calculation of the... Title of program: SuperIso Catalogue Id: AEAN_v2_0 Nature of problem Calculation of flavor physics observables as well as the muon anomalous magnetic moment in the Minimal Supersymmetric Standard Model with minimal flavor violation, in order to derive constraints on the supersymmetric parameter space. Versions of this program held in the CPC repository in Mendeley Data AEAN_v1_0; SuperIso; 10.1016/j.cpc.2007.12.006 AEAN_v2_0; SuperIso; 10.1016/j.cpc.2009.02.017 AEAN_v3_0; SuperIso v3.0; 10.1016/j.cpc.2009.05.001
DOI: 10.6084/m9.figshare.13378145.v1
title: Rees & Raven data summary and references.xls

description: Data on maximum growth rate (µ<sub>max</sub>), organism nitrogen and phosphorus content (as % dry weight) and phosphorus-containing cellular constituents (polyphosphate, RNA, DNA, phospholipid and phosphate esters and anhydrides) expressed as a percentage of dry weight and/or total phosphorus in photosynthetic organisms.
DOI: 10.6084/m9.figshare.29110022.v1
title: SUPPLEMENTARY MATERIAL: REVIEW HANDBALL

description: SEARCH STRATEGY AND KEYWORDS (OR/AND): SUPPLEMENTARY MATERIAL 1characteristics and type of intervention protocol of the studies selected: SUPPLEMENTARY MATERIAL 2
DOI: 10.17632/5d4ypjd9nc
title: The dataset of decision matrices including performance values of 30 European countries evaluated with regard to sustainable RES exploitation

description: Decision matrices containing performance values of 30 European countries evaluated with regard to 15 criteria assessment of sustainable renewable energy sources (RES) exploitation collected from the Eurostat database for 2015-2019. The XLSX and pdf formats are available.
DOI: 10.6084/m9.figshare.10073339.v1
title: Transvaginal ultrasound in deep endometriosis: pictorial essay

description: Abstract Endometriosis is characterized by the presence of endometrial tissue outside the uterus. When endometrial implants penetrate more than 5 mm into the peritoneum, the condition is referred to as deep pelvic endometriosis. Although laparoscopy is the gold standard test to establish a diagnosis of deep endometriosis, transvaginal ultrasound represents an alternative that can contribute to detection of the disease, because it is an accessible, low-cost, noninvasive examination that allows preoperative planning in cases requiring surgical treatment. However, in clinical practice, transvaginal ultrasound is still not widely used as the first-line examination in suspected cases of endometriosis. This essay describes the findings of deep endometriosis on transvaginal ultrasound, in order to disseminate knowledge of the utility of the technique for the diagnosis of this disease.
DOI: 10.6084/m9.figshare.20033024.v2
title: Processed single-cell RNA-seq data

description: In heterogeneous head and neck cancer (HNC), subtype-specific treatment regimens are currently missing. An integrated analysis of patient HNC subtypes using single-cell sequencing and proteome profiles revealed a hallmark epithelial-mesenchymal transition (EMT) signature within the epithelial cancer-cell population. The EMT signature was evident in the invasive mesenchymal subtype and importantly, coincided with PI3K/mTOR pathway inactivation. Conversely, the signature was suppressed in epithelial cancer cells of the basal subtype which exhibits hyperactive PI3K/mTOR oncogenic signalling.
DOI: 10.6084/m9.figshare.25647993.v1
title: Raw Data for "iATPSnFR2: a high dynamic range fluorescent sensor for monitoring intracellular ATP"

description: Here we develop a next-generation genetically encoded ratiometric fluorescent ATP sensor that allows subcellular tracking of ATP levels in living cells.
DOI: 10.6084/m9.figshare.26364664.v1
title: <b>Nature 2024-07-13579</b>

description: Spatial 3D genome and bivalent chromatin in human neurogenesis
DOI: 10.17632/35wpkffzsj
title: Markov Equilibrium of Social Security: An Analytic Solution under CRRA Utility and the Future of Social Security: Data and Codes for Replication

description: All codes and data for the figures and tables shown in the article "Markov Equilibrium of Social Security: An Analytic Solution under CRRA Utility and the Future of Social Security" is included in these files. 
Files include an excel file with all tables and figures and matlab files for figures in the Appendix.
DOI: 10.17632/98sgry2gy9
title: বিরোধী ভাবধারা ও প্রতিবাদের ভাষায় বীরেন্দ্র চট্টোপাধ্যায়ের কবিতা : একটি বিশ্লেষণী পাঠ

description: বিংশ শতকের চল্লিশ দশকের কবি বীরেন্দ্র চট্টোপাধ্যায়। একদিকে মানব দরদী অন্যদিকে প্রতিবাদী। রক্ষণশীল ব্রাহ্মণ পরিবারের সন্তান হলেও শৈশব থেকেই গোঁড়ামি ও কুসংস্কারের বিরুদ্ধে প্রতিবাদ করেছেন। তাঁর রচিত বেশির ভাগ কবিতার মধ্যেই রয়েছে প্রতিবাদের ও প্রতিরোধের ভাষা। অন্যায়কে তিনি কখনো আপস করেন নি। জীবনে চলার পথে যেখানেই তিনি অন্যায় দেখেছেন, সেখানেই তাঁর কণ্ঠ থেকে বেরিয়ে এসেছে প্রতিবাদের ভাষা। আর এই প্রতিবাদের ভাষাকেই তিনি রূপ দিয়েছেন তাঁর করিতায়। ঢাকায় সাম্প্রদায়িক দাঙ্গা, ভারতবর্ষের স্বাধীনতা সংগ্রাম, তে-ভাগা আন্দোলন, ১৯৫৯ থেকে খাদ্য আন্দোলন, চীন- ভারতের যুদ্ধ, পুলিশ ও মহাজনদের অত্যাচার, মে দিবসের রক্তাত্ত ইতিহাস তাঁর কবিতার বিষয়বস্তু হয়ে উঠেছে। তাঁর কবিতা সমসাময়িক কালের দলিল; আবার বলা যায় ভবিষ্যৎ প্রজন্মের কাছে প্রতিবাদের অস্ত্র। যে কারনে হয়তো শঙ্খ ঘোষ বীরেন্দ্র সমগ্রে, ১ম খণ্ডের সূচনায় বলেছেন- "সমস্ত অর্থেই বাংলার সবচেয়ে প্রতিবাদী এই কবি; তাঁর কবিতা যেন আমাদের সামনে একটা সম্পূর্ণ ইতিহাস তুলে ধরে, আমাদের হৃদয়ের ইতিহাস আর আমাদের সময়ের ইতিহাস"। যন্ত্রনাদগ্ধ মানুষের পাশে দাঁড়িয়ে মানব দরদী বীরেন্দ্র চট্টোপাধ্যায় সাম্যবাদী আদর্শে নতুন এক ভারতবর্ষ গড়ার স্বপ্ন দেখেছিলেন। যারা আকাশ বিষাক্ত করে, জল কালো করে, বাতাস ধোঁয়ায় কুয়াশায় ক্রমে অন্ধকার করে, চারিদিকে ষড়যন্ত্র করে; তাদের উদ্দেশে কবি "আমার ভারতবর্ষ" করিতায় উল্লেখ করেছেন-
“আমার ভারতবর্ষ চেনেনা তাদের
মানেনা তাদের পরোয়ানা
তাঁর সন্তানেরা ক্ষুধায় জ্বালায়, শীতে চারিদিকের প্রচণ্ড মারের মধ্যে
আজও ঈশ্বরের শিশু, পরস্পরের সহোদর।”
কৈশোরকাল থেকেই বীরেন্দ্র চট্টোপাধ্যায়ের মধ্যে বামপন্থী ভাবধারা স্পষ্ট হতে থাকে এবং ১৯৪২ এ তিনি কমিউনিস্ট পার্টির সদস্যপদ লাভ করেন। কমিউনিস্ট পার্টির অন্তর্বিরোধ এবং পার্টির বিভাগ কবিকে আন্দোলিত করে এবং তাঁর ফলে কবির মধ্যে জেগে ওঠে প্রতিবাদী স্বভাব। এ প্রসঙ্গে শ্রেষ্ঠ কাব্যের ভূমিকায় বীরেন্দ্র চট্টোপাধ্যাইয়ের বক্তব্য- "অনুভব কোন প্রশ্নের উত্তর নয়। সময়, স্বদেশ, মনুষ্যত্ব কবি কবিতা, কবিতার পাঠক কোথাও যদি এক্সুত্রে বাঁধা যেতো? হয়তো অনেক প্রশ্নের উত্তর পাওয়া যেত। "আর এই অনেক প্রশ্নের উত্তর অন্বেষণ করতেই বীরেন্দ্র চট্টোপাধ্যায়ের কবিতার মধ্যে উঠে এসেছে প্রতিবাদের ভাষা, সুর, আদল। মানুষের জীবন সংগ্রামকে কেন্দ্র করে এই অনেক প্রশ্ন। স্বাধীনতা পূর্ববর্তী ও পরবর্তী শোষিত, লঞ্চিত, অবহেলিত, বুভুক্ষ, নিরন্ন মানুষদের ন্যূনতম অন্ন, বস্ত্র, বাসস্থান, শিক্ষা, স্বাস্থ্যের অভাব দেখে কবির কলমে উঠে এসেছে প্রতিবাদ।
শতবর্ষে পরেও আজ বীরেন্দ্র চট্টোপাধ্যায়ের কবিতা কেন পাঠ্য? আজকের সামাজিক অবস্থা, মানুষের নৈতিক মূল্যবোধ, পারিবারিক বন্ধন, রাজনৈতিক অবস্থা, শিক্ষা-সংস্কৃতির দিকে দৃষ্টিপাত করলে বীরেন্দ্র চট্টোপাধ্যায়ের 'রাজা আসে যায়' কবিতার কয়েকটি পংত্তি এ প্রসঙ্গে প্রাসঙ্গিক হয়ে উঠে-

“রাজা আসে যায় রাজা বদলায়
 নীল জামা গায় লাল জামা গায়
এই রাজা আসে ওই রাজা যায়
জামা কাপড়ের রং বদলায়
 দিন বদলায় না।”
সত্যিই! দিন যেন বদলায় নি। জীবনে যাপনে সমাজে সভ্যতায় সাধারন মানুষকে আজও যে অত্যাচারের, অবিচারের সম্মুখীন হতে হচ্ছে, তা পাঠককে অবগত করার অবকাশ নেই। 'রাজনীতি' শব্দের অর্থ রাজার নীতি। কিন্তু এই নীতি যখন রাজতন্ত্রের, পুঁজিবাদীদের, শাসক সমাজের গণ্ডি পেরিয়ে সাধারন মানুষের জন্য সহজ...........
DOI: 10.6084/m9.figshare.21857484.v1
title: AGILE 2023: Data and Software Availability

description: There are two datasets as follows, 1) This original dataset of ICT patent applications includes the date of application and addresses of applicants during 2007-2021. <br> 2) District administrative Boundaries at Three Levels in China
DOI: 10.6084/m9.figshare.27107320.v1
title: Data and Code for Hansen et al

description: Plasticulture is a rapidly growing and globally used high-intensity production system with limited understanding of long-term consequences. We systemically integrate biotic, abiotic, and economic aspects to evaluate compact bed plasticulture (CBP). CBP is a resource-efficient redesign which uses narrower and taller bed geometry to reduce inputs, costs, production stress, and environmental impact. Experimental sites were opportunistically situated on commercial farms to make scale-relevant, translational research for large-scale adoption. The evaluation involved a holistic analysis of several metrics including yield, soil moisture levels, microbial diversity, nematode count, disease incidence, soil nutrient concentrations, input productivity, and economics. CBP increased yield and nutrient uptake and reduced drought/saturation stresses, pest (nematode), diseases (fusarium), runoff/flooding, and nitrate leaching. CBP not only reduced pre-plant pesticides by 40% but also made the use of costly, more selective pesticide alternatives economically analogous to conventional fumigants. Alternative pesticides with CBP increased soil microbial diversity while reducing the abundance of root-knot nematodes and fusarium wilt, two global crop stressors. Reduction in abiotic and biotic stressors achieved greater yields and profits (US$2,798/ha) while increasing nitrogen (12%), phosphorus (12%), water (12%), and plastic (24%) productivity and reducing the carbon footprint (10%). These synergistic benefits have impelled large-scale North American adoption. Complete adoption of CBP on tomato farms in North America would result in a 4.4 Mt reduction in plastics, a 22.8 Mt reduction in pesticide, and a $183 million increase in annual income. The dual strategy of CBP and alternative pesticides is an innovation that enhances productivity sustainability of plasticulture while reducing risks and environmental impacts.
DOI: 10.6084/m9.figshare.12974792.v1
title: Supplemental Alignment Files (for manuscript - High throughput sequencing of microRNA in rainbow trout plasma, mucus, and surrounding water following acute stress)

description: Alignment files from a rainbow trout small RNA-Seq study. Aligned to the NCBI rainbow trout genome and mature miRNA annotated with miRbase.org <i>Salmo Salar</i> microRNA using miRDeep2 (through miARma-Seq). See the word doc (Supplemental Alignment Files Captions) for an explanation of each file type.
DOI: 10.6084/m9.figshare.24547162.v4
title: Simultaneous single-cell three-dimensional genome and gene expression profiling uncovers dynamic enhancer connectivity underlying olfactory receptor choice

description: This item hosts LiMCA source data files. Also see https://github.com/zhang-jiankun/LiMCA.
DOI: 10.6084/m9.figshare.28520114.v1
title: US-LandCover-Dataset

description: Monitoring land cover changes is essential for understanding the environmental impact of natural processes and human activities, such as deforestation, urbanization, and agriculture. We present a comprehensive dataset covering the entire United States, spanning from 2016 to 2024. This dataset integrates multi-band imagery from the Sentinel-2 satellite with pixel-level land cover annotations from the Dynamic World dataset, providing a valuable resource for land cover change detection research. The dataset is publicly available and includes six spectral bands (Red, Green, Blue, NIR, SWIR1, SWIR2) as well as labels indicating land cover types. To address the steep learning curve associated with remote sensing, we also provide accompanying code to facilitate data loading and perform basic analyses, enabling researchers to focus on their core work without being hindered by data preprocessing challenges. This dataset facilitates research in fields such as environmental monitoring, urban planning, and climate change, offering an accessible tool for understanding landscape dynamics over time.
DOI: 10.17632/dzpjcgdvhv
title: Odontoid xray

description: There is a collection of 216 odontoid x-ray pictures, which were already augmented.
DOI: 10.17632/g7nr34gvj9
title: Impact of silica on the identity of minerals formed in Archean oceans during Fe cycling by cyanobacteria and iron(III)-reducing bacteria
DOI: 10.6084/m9.figshare.23192624.v1
title: Quantifying the impact of AI recommendations with explanations on prescription decisions: an interactive 3 vignette study (data & code)

description: This folder contains all the data and code to reproduce the results and figures in both the manuscript ("<strong>Quantifying the impact of AI recommendations with explanations on prescription decisions: an interactive 3 vignette study</strong>" by <strong>Myura Nagendran, Paul Festor, Matthieu Komorowski, Anthony Gordon, Aldo Faisal</strong>) and the supplementary appendices. For more details about the project structure please check the README file in the root of the folder. A data dictionary is also provided in the data folder for the four raw csv data files. The two jupyter notebooks to (1) prepare the data and (2) generate all results and figures should be run sequentially. Please see README within the zip file for more details.
DOI: 10.6084/m9.figshare.4223811.v1
title: FreeSurfer reconstruction of the MNI152 ICBM2009c asymmetrical non-linear atlas

description: Wed Oct 26 03:50:18 PDT 2016/scratch/users/chrisgor/ICBM2009c_freesurfer/subjects_dir/ICBM2009c_fs6/opt/freesurfer/bin/recon-all-s ICBM2009c_fs6 -i /scratch/users/chrisgor/ICBM2009c_freesurfer/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz -all -openmp 16 -sd /scratch/users/chrisgor/ICBM2009c_freesurfer/subjects_dir/subjid ICBM2009c_fs6setenv SUBJECTS_DIR /scratch/users/chrisgor/ICBM2009c_freesurfer/subjects_dirFREESURFER_HOME /opt/freesurferActual FREESURFER_HOME /opt/freesurferbuild-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-v6-beta-20161019-e582155Linux sh-0-28.local 2.6.32-573.12.1.el6.x86_64 #1 SMP Tue Dec 15 21:19:08 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux