cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3554112
title: Supplement 3. Mean values for six floral traits measured on 117 species of Pedicularis.

description: File List Supplement_3.txt (md5: 58fcc20cb35347b6d564a5007cfeda9e) Description Supplement_3.txt is a tab-separated file. It contains trait values used for species level analyses. 1. species name<br> 2. phyllotaxy<br> 3. corolla tube range low<br> 4. corolla tube range high<br> 5. corolla tube mean<br> 6. galea beak range low<br> 7. galea beak range high<br> 8. galea beak mean<br> 9. presence/absence of nectar<br> 10. position of stigma contact on bumble bee<br> 11. orientation of bumble bee<br> 12. most common corolla color<br> 13. alternate coding of stigma contact position<br> 14. pollination observed vs. inferred
DOI: 10.6084/m9.figshare.3554109
title: Appendix A. Regions and adjacency matrix for likelihood-based ancestral-area reconstructions in LAGRANGE.

description: Regions and adjacency matrix for likelihood-based ancestral-area reconstructions in LAGRANGE.
DOI: 10.6084/m9.figshare.3554109.v1
title: Appendix A. Regions and adjacency matrix for likelihood-based ancestral-area reconstructions in LAGRANGE.

description: Regions and adjacency matrix for likelihood-based ancestral-area reconstructions in LAGRANGE.
DOI: 10.6084/m9.figshare.3554106
title: Appendix B. Analyses of the relationships between species richness patterns and multivariate measures of climatic variation.

description: Analyses of the relationships between species richness patterns and multivariate measures of climatic variation.
DOI: 10.6084/m9.figshare.3554106.v1
title: Appendix B. Analyses of the relationships between species richness patterns and multivariate measures of climatic variation.

description: Analyses of the relationships between species richness patterns and multivariate measures of climatic variation.
DOI: 10.6084/m9.figshare.3554103
title: Appendix C. Samples sizes, mean climatic values, and standard errors for the local communities of different sizes illustrated in Fig. 3.

description: Samples sizes, mean climatic values, and standard errors for the local communities of different sizes illustrated in Fig. 3.
DOI: 10.6084/m9.figshare.3554103.v1
title: Appendix C. Samples sizes, mean climatic values, and standard errors for the local communities of different sizes illustrated in Fig. 3.

description: Samples sizes, mean climatic values, and standard errors for the local communities of different sizes illustrated in Fig. 3.
DOI: 10.6084/m9.figshare.3554100
title: Appendix A. Sampling protocol, site names, and GPS coordinates for vegetation sampling that estimated the depth of occurrence for Lasthenia lineages occupying vernal pools.

description: Sampling protocol, site names, and GPS coordinates for vegetation sampling that estimated the depth of occurrence for Lasthenia lineages occupying vernal pools.
DOI: 10.6084/m9.figshare.3554100.v1
title: Appendix A. Sampling protocol, site names, and GPS coordinates for vegetation sampling that estimated the depth of occurrence for Lasthenia lineages occupying vernal pools.

description: Sampling protocol, site names, and GPS coordinates for vegetation sampling that estimated the depth of occurrence for Lasthenia lineages occupying vernal pools.
DOI: 10.6084/m9.figshare.3554097
title: Appendix B. Extended table summarizing the estimates of phylogenetic signal (Blomberg's K statistic) and tests of significance for niche parameters not included in Table 4.

description: Extended table summarizing the estimates of phylogenetic signal (Blomberg's K statistic) and tests of significance for niche parameters not included in Table 4.
DOI: 10.6084/m9.figshare.3554097.v1
title: Appendix B. Extended table summarizing the estimates of phylogenetic signal (Blomberg's K statistic) and tests of significance for niche parameters not included in Table 4.

description: Extended table summarizing the estimates of phylogenetic signal (Blomberg's K statistic) and tests of significance for niche parameters not included in Table 4.
DOI: 10.6084/m9.figshare.3554094
title: Appendix A. Phylogenetic and molecular analysis of the ADH gene for fifteen species in the family Salicaceae.

description: Phylogenetic and molecular analysis of the ADH gene for fifteen species in the family Salicaceae.
DOI: 10.6084/m9.figshare.3554094.v1
title: Appendix A. Phylogenetic and molecular analysis of the ADH gene for fifteen species in the family Salicaceae.

description: Phylogenetic and molecular analysis of the ADH gene for fifteen species in the family Salicaceae.
DOI: 10.6084/m9.figshare.3554091
title: Appendix B. Phylogenetic and molecular analysis of the five barcoding genes (matK, rbcLa, trnH-psbA, atpF-atpH, and psbK-psbl) for 15 species in the family Salicaceae.

description: Phylogenetic and molecular analysis of the five barcoding genes (matK, rbcLa, trnH-psbA, atpF-atpH, and psbK-psbl) for 15 species in the family Salicaceae.
DOI: 10.6084/m9.figshare.3554091.v1
title: Appendix B. Phylogenetic and molecular analysis of the five barcoding genes (matK, rbcLa, trnH-psbA, atpF-atpH, and psbK-psbl) for 15 species in the family Salicaceae.

description: Phylogenetic and molecular analysis of the five barcoding genes (matK, rbcLa, trnH-psbA, atpF-atpH, and psbK-psbl) for 15 species in the family Salicaceae.
DOI: 10.6084/m9.figshare.3554088
title: Appendix C. Functional trait methods and data from the field and greenhouse.

description: Functional trait methods and data from the field and greenhouse.
DOI: 10.6084/m9.figshare.3554088.v1
title: Appendix C. Functional trait methods and data from the field and greenhouse.

description: Functional trait methods and data from the field and greenhouse.
DOI: 10.6084/m9.figshare.3554085
title: Appendix D. Phylogenetically independent contrasts (PIC), net relatedness index (NRI), and phylogenetic species variability (PSV) results considering different phylogenetic hypotheses.

description: Phylogenetically independent contrasts (PIC), net relatedness index (NRI), and phylogenetic species variability (PSV) results considering different phylogenetic hypotheses.
DOI: 10.6084/m9.figshare.3554085.v1
title: Appendix D. Phylogenetically independent contrasts (PIC), net relatedness index (NRI), and phylogenetic species variability (PSV) results considering different phylogenetic hypotheses.

description: Phylogenetically independent contrasts (PIC), net relatedness index (NRI), and phylogenetic species variability (PSV) results considering different phylogenetic hypotheses.
DOI: 10.6084/m9.figshare.3554082
title: Appendix A. Tables with additional methods and analysis including descriptions of focal species, model selection criteria, and a priori model for pot productivity.

description: Tables with additional methods and analysis including descriptions of focal species, model selection criteria, and a priori model for pot productivity.
DOI: 10.6084/m9.figshare.3554082.v1
title: Appendix A. Tables with additional methods and analysis including descriptions of focal species, model selection criteria, and a priori model for pot productivity.

description: Tables with additional methods and analysis including descriptions of focal species, model selection criteria, and a priori model for pot productivity.
DOI: 10.6084/m9.figshare.3554079
title: Appendix B. Supplementary figures including phylogenetic signal on traits and trait means across treatments.

description: Supplementary figures including phylogenetic signal on traits and trait means across treatments.
DOI: 10.6084/m9.figshare.3554079.v1
title: Appendix B. Supplementary figures including phylogenetic signal on traits and trait means across treatments.

description: Supplementary figures including phylogenetic signal on traits and trait means across treatments.
DOI: 10.6084/m9.figshare.3554076
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3554076.v1
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3554073
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3554073.v1
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3554070
title: Appendix A. Methods for analyzing community turnover at increasing phylogenetic depths.

description: Methods for analyzing community turnover at increasing phylogenetic depths.
DOI: 10.6084/m9.figshare.3554067
title: Appendix B. Functional, phylogenetic, and species diversity metrics within communities by fire frequency treatment over time.

description: Functional, phylogenetic, and species diversity metrics within communities by fire frequency treatment over time.
DOI: 10.6084/m9.figshare.3554064
title: Appendix C. Graphical presentation of species relative biomass by fire frequency treatment in the Cedar Creek Ecosystem Science Reserve oak savanna across the phylogeny.

description: Graphical presentation of species relative biomass by fire frequency treatment in the Cedar Creek Ecosystem Science Reserve oak savanna across the phylogeny.
DOI: 10.6084/m9.figshare.3554064.v1
title: Appendix C. Graphical presentation of species relative biomass by fire frequency treatment in the Cedar Creek Ecosystem Science Reserve oak savanna across the phylogeny.

description: Graphical presentation of species relative biomass by fire frequency treatment in the Cedar Creek Ecosystem Science Reserve oak savanna across the phylogeny.
DOI: 10.6084/m9.figshare.3554061
title: Appendix D. ANOSIM results.

description: ANOSIM results.
DOI: 10.6084/m9.figshare.3554061.v1
title: Appendix D. ANOSIM results.

description: ANOSIM results.
DOI: 10.6084/m9.figshare.3554058
title: Appendix E. Comparison of phylogenetic diversity metrics calculated from different phylogenies.

description: Comparison of phylogenetic diversity metrics calculated from different phylogenies.
DOI: 10.6084/m9.figshare.12915785.v1
title: 2017 Ekiti State Estimated Population Data

description: Estimated Ekiti state population data
DOI: 10.6084/m9.figshare.3554058.v1
title: Appendix E. Comparison of phylogenetic diversity metrics calculated from different phylogenies.

description: Comparison of phylogenetic diversity metrics calculated from different phylogenies.
DOI: 10.6084/m9.figshare.12915785
title: 2017 Ekiti State Estimated Population Data

description: Estimated Ekiti state population data
DOI: 10.6084/m9.figshare.3554055
title: Supplement 1. Three phylogenetic hypotheses for plant taxa in the Cedar Creek oak savanna communities used in calculating metrics of phylogenetic diversity.

description: File List phylogenetic_hypotheses.txt Description Three phylogenetic hypotheses for plant taxa in the Cedar Creek oak savanna communities used in calculating metrics of phylogenetic diversity. Phylogenies are presented in newick format: (1) CChphy (2) EcoPhWG and (3) Willis et al 2010. See text for details.
DOI: 10.6084/m9.figshare.3554055.v1
title: Supplement 1. Three phylogenetic hypotheses for plant taxa in the Cedar Creek oak savanna communities used in calculating metrics of phylogenetic diversity.

description: File List phylogenetic_hypotheses.txt Description Three phylogenetic hypotheses for plant taxa in the Cedar Creek oak savanna communities used in calculating metrics of phylogenetic diversity. Phylogenies are presented in newick format: (1) CChphy (2) EcoPhWG and (3) Willis et al 2010. See text for details.
DOI: 10.6084/m9.figshare.3554052
title: Supplement 2. Node ages (in millions of years) used to estimate phylogenetic branch lengths.

description: File List node_ages.txt Description Node ages (in millions of years) used to estimate phylogenetic branch lengths.
DOI: 10.6084/m9.figshare.3554052.v1
title: Supplement 2. Node ages (in millions of years) used to estimate phylogenetic branch lengths.

description: File List node_ages.txt Description Node ages (in millions of years) used to estimate phylogenetic branch lengths.
DOI: 10.6084/m9.figshare.3554049
title: Appendix A. A table reporting phylogenetic statistics for clades representing mammal families included in Fig. 2., figures showing variation in size ratios (VSR) with tree stemminess and under an Ornstein–Uhlenbeck process, and a figure depicting the phylogeny for the mammal community of Yotvata, Israel.

description: A table reporting phylogenetic statistics for clades representing mammal families included in Fig. 2., figures showing variation in size ratios (VSR) with tree stemminess and under an Ornstein–Uhlenbeck process, and a figure depicting the phylogeny for the mammal community of Yotvata, Israel.
DOI: 10.6084/m9.figshare.3554049.v1
title: Appendix A. A table reporting phylogenetic statistics for clades representing mammal families included in Fig. 2., figures showing variation in size ratios (VSR) with tree stemminess and under an Ornstein–Uhlenbeck process, and a figure depicting the phylogeny for the mammal community of Yotvata, Israel.

description: A table reporting phylogenetic statistics for clades representing mammal families included in Fig. 2., figures showing variation in size ratios (VSR) with tree stemminess and under an Ornstein–Uhlenbeck process, and a figure depicting the phylogeny for the mammal community of Yotvata, Israel.
DOI: 10.6084/m9.figshare.3554046
title: Appendix A. Phylogenetic tree for the Mt. Hood, Oregon, USA, data set.

description: Phylogenetic tree for the Mt. Hood, Oregon, USA, data set.
DOI: 10.6084/m9.figshare.3554046.v1
title: Appendix A. Phylogenetic tree for the Mt. Hood, Oregon, USA, data set.

description: Phylogenetic tree for the Mt. Hood, Oregon, USA, data set.
DOI: 10.6084/m9.figshare.3554043
title: Appendix B. Anolis phylogeny and estimates of ancestral colonizations in the Caribbean.

description: Anolis phylogeny and estimates of ancestral colonizations in the Caribbean.
DOI: 10.6084/m9.figshare.3554043.v1
title: Appendix B. Anolis phylogeny and estimates of ancestral colonizations in the Caribbean.

description: Anolis phylogeny and estimates of ancestral colonizations in the Caribbean.
DOI: 10.6084/m9.figshare.3554040
title: Gaussian Job Archive for C60H50S12

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3554040.v1
title: Gaussian Job Archive for C60H50S12

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3554037
title: Supplement 1. MATLAB code for the ecological and macroevolutionary simulation models and general R code to calculate spatial and nonspatial phylogenetic diversity–area curves.

description: File List Helmus_PDAC_Matlab.m Helmus_PDAC_R.r Description The matlab code generates all of the ecological and macroevolutionary simulations models presented in the results. The R code calculates spatial and nonspatial phylogenetic diversity area curves for community/sample/plot data sets. The R code is general so that it should work on most data sets.
DOI: 10.6084/m9.figshare.3554037.v1
title: Supplement 1. MATLAB code for the ecological and macroevolutionary simulation models and general R code to calculate spatial and nonspatial phylogenetic diversity–area curves.

description: File List Helmus_PDAC_Matlab.m Helmus_PDAC_R.r Description The matlab code generates all of the ecological and macroevolutionary simulations models presented in the results. The R code calculates spatial and nonspatial phylogenetic diversity area curves for community/sample/plot data sets. The R code is general so that it should work on most data sets.
DOI: 10.6084/m9.figshare.3554034
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3554034.v1
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3554031
title: Gaussian Job Archive for C60H50S12

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3554031.v1
title: Gaussian Job Archive for C60H50S12

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3554028
title: Gaussian Job Archive for C60H50S12

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3554028.v1
title: Gaussian Job Archive for C60H50S12

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3554025
title: Data Paper. Data Paper

description: File List HMS_Migration_Data.txt -- Comma-delimited ASCII text file of the complete migration records for the period 1934–2010. The file consists of 42000 entries with each row comprising 44 cells. No compression was used. Description In most northern temperate regions diurnal birds of prey, or raptors, migrate seasonally between their breeding and wintering grounds. Although their populations can be logistically difficult to survey and monitor because they are largely secretive and wide-ranging, most raptors are obligate or facultative soaring migrants that congregate along major thermal and orographic updraft corridors during their seasonal movements. Hawk Mountain Sanctuary (41° N, 75° W), which straddles the Kittatinny Ridge, the southernmost ridge in the Appalachian Mountains in eastern Pennsylvania, witnesses large numbers of migrating raptors during autumn migration. The Sanctuary’s long-term migration-count database is the oldest detailed archive on the timing and magnitude of migratory raptors in the world. Records comprise daily (1934–1965) or hourly (1966–present) counts of 18 North American species of raptors migrating past the Sanctuary, as well as detailed weather data recorded from the lookout during autumn migration (15 August to 15 December). The long-term data set has been valuable in understanding raptor migration and population trends. Because top predators such as raptors are sensitive bio-indicators of ecosystem changes, variations in the numbers of individual species also may reflect changes in the health of the environment. Thus, monitoring population trends of raptors can provide crucial information on environmental changes and threats facing wildlife species. Indeed, the Sanctuary’s database has been key in identifying the now well-known example of organochlorine contamination of top predators and has helped the conservation, management, and reintroduction of many species such as Osprey (<i>Pandion haliaetus</i>), Bald Eagle (<i>Haliaeetus leucocephalus</i>), and Peregrine Falcon (<i>Falco peregrinus</i>). This database is of prime significance to conservation ecology and long-term fluctuations in numbers of migratory birds. <i>Key words: bird counts; bird migration; Hawk Mountain Sanctuary; long-term studies; Pennsylvania (USA); population census; raptor.</i>
DOI: 10.6084/m9.figshare.3554025.v1
title: Data Paper. Data Paper

description: File List HMS_Migration_Data.txt -- Comma-delimited ASCII text file of the complete migration records for the period 1934–2010. The file consists of 42000 entries with each row comprising 44 cells. No compression was used. Description In most northern temperate regions diurnal birds of prey, or raptors, migrate seasonally between their breeding and wintering grounds. Although their populations can be logistically difficult to survey and monitor because they are largely secretive and wide-ranging, most raptors are obligate or facultative soaring migrants that congregate along major thermal and orographic updraft corridors during their seasonal movements. Hawk Mountain Sanctuary (41° N, 75° W), which straddles the Kittatinny Ridge, the southernmost ridge in the Appalachian Mountains in eastern Pennsylvania, witnesses large numbers of migrating raptors during autumn migration. The Sanctuary’s long-term migration-count database is the oldest detailed archive on the timing and magnitude of migratory raptors in the world. Records comprise daily (1934–1965) or hourly (1966–present) counts of 18 North American species of raptors migrating past the Sanctuary, as well as detailed weather data recorded from the lookout during autumn migration (15 August to 15 December). The long-term data set has been valuable in understanding raptor migration and population trends. Because top predators such as raptors are sensitive bio-indicators of ecosystem changes, variations in the numbers of individual species also may reflect changes in the health of the environment. Thus, monitoring population trends of raptors can provide crucial information on environmental changes and threats facing wildlife species. Indeed, the Sanctuary’s database has been key in identifying the now well-known example of organochlorine contamination of top predators and has helped the conservation, management, and reintroduction of many species such as Osprey (<i>Pandion haliaetus</i>), Bald Eagle (<i>Haliaeetus leucocephalus</i>), and Peregrine Falcon (<i>Falco peregrinus</i>). This database is of prime significance to conservation ecology and long-term fluctuations in numbers of migratory birds. <i>Key words: bird counts; bird migration; Hawk Mountain Sanctuary; long-term studies; Pennsylvania (USA); population census; raptor.</i>
DOI: 10.6084/m9.figshare.3554022
title: Appendix A. Analysis of the influence of density-dependent emigration, carry capacity (K), fertility (λ), and competition strength (density regulation, β) on our results; and evolutionarily stable emigration rates depending on environmental stochasticity (σ), dispersal costs (μ), fertility (λ), and carrying capacity (K).

description: Analysis of the influence of density-dependent emigration, carry capacity (K), fertility (λ), and competition strength (density regulation, β) on our results; and evolutionarily stable emigration rates depending on environmental stochasticity (σ), dispersal costs (μ), fertility (λ), and carrying capacity (K).
DOI: 10.6084/m9.figshare.3554022.v1
title: Appendix A. Analysis of the influence of density-dependent emigration, carry capacity (K), fertility (λ), and competition strength (density regulation, β) on our results; and evolutionarily stable emigration rates depending on environmental stochasticity (σ), dispersal costs (μ), fertility (λ), and carrying capacity (K).

description: Analysis of the influence of density-dependent emigration, carry capacity (K), fertility (λ), and competition strength (density regulation, β) on our results; and evolutionarily stable emigration rates depending on environmental stochasticity (σ), dispersal costs (μ), fertility (λ), and carrying capacity (K).
DOI: 10.6084/m9.figshare.3554019
title: Appendix A. Parameter values and detailed results of simulation study.

description: Parameter values and detailed results of simulation study.
DOI: 10.6084/m9.figshare.3554019.v1
title: Appendix A. Parameter values and detailed results of simulation study.

description: Parameter values and detailed results of simulation study.
DOI: 10.6084/m9.figshare.3554016
title: Appendix B. Graphical summary of simulation study.

description: Graphical summary of simulation study.
DOI: 10.6084/m9.figshare.3554016.v1
title: Appendix B. Graphical summary of simulation study.

description: Graphical summary of simulation study.
DOI: 10.6084/m9.figshare.3554013
title: Appendix C. Relative bias of estimates from simulated data.

description: Relative bias of estimates from simulated data.
DOI: 10.6084/m9.figshare.3554013.v1
title: Appendix C. Relative bias of estimates from simulated data.

description: Relative bias of estimates from simulated data.
DOI: 10.6084/m9.figshare.3554010
title: Appendix D. Coefficient estimates for detection portion of model.

description: Coefficient estimates for detection portion of model.
DOI: 10.6084/m9.figshare.3554010.v1
title: Appendix D. Coefficient estimates for detection portion of model.

description: Coefficient estimates for detection portion of model.