cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.p382cg
title: Occurrence Download

description: A dataset containing 3625 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Nasua narica (Linnaeus, 1766)"
 ]
}

 The dataset includes 3625 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219430-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pcbzmy
title: Occurrence Download

description: A dataset containing 2742 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thamnophis atratus Kennicott, 1860",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2742 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011013-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmuzs5
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Freshwater Lamprey Survey Data"
 ]
}

 The dataset includes 772 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006149-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.au7wta
title: Occurrence Download

description: A dataset containing 38693 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Simaroubaceae"
 ]
}

 The dataset includes 38693 records from 568 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238511-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c6ha82
title: Occurrence Download

description: A dataset containing 116879 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Filipendula vulgaris Moench",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 116879 records from 715 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084241-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.neqj2d
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Microphiopholis puntarenae (Lütken, 1856)"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008067-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swxdo9
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculus catharinensis Lourteig"
 ]
}

 The dataset includes 25 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010977-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3fcncd
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Croton exuberans Müll.Arg."
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153082-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3uee62
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Freshwater Lamprey Survey Data"
 ]
}

 The dataset includes 772 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006179-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9nniu
title: Occurrence Download

description: A dataset containing 37988 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microtus agrestis (Linnaeus, 1761)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 37988 records from 208 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011002-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.722455
title: Meiofauna abundance in sediment core 13077-021
DOI: 10.1594/pangaea.407752
title: Planktic foraminifera distribution of sediment core 75KS52
DOI: 10.1594/pangaea.728750
title: (Appendix A) Stratigraphic range and relative abundance of Neogene planktonic foraminifer taxa in ODP Hole 120-747A

description: Species abundance: A = abundant (&gt;25%), C = common (16-24%), F = frequent (6-15%), R = rare (1-5%), - = absent, based on a random sample of 200-400 specimens from the &gt;63 µm size fraction
DOI: 10.1594/pangaea.251536
title: Nannofossil abundance of Hole 11-102

description: Relative abundance: D = dominant, A = abundant, C = common, F = few, R = rare, T = trace, P = present (numerical values are abundance in percent)
DOI: 10.15468/dl.slqlzh
title: Occurrence Download

description: A dataset containing 180 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Piresia leptophylla Soderstr."
 ]
}

 The dataset includes 180 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003495-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.75881
title: Plasm bearing foraminifera counts of multinet M21/2_MSN644
DOI: 10.15468/dl.2ajvma
title: Occurrence Download

description: A dataset containing 40162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-71.328 42.442,-71.255 42.442,-71.255 42.463,-71.328 42.463,-71.328 42.442))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 40162 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003498-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hj6gwz
title: Occurrence Download

description: A dataset containing 20577 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-800.0",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-130.20806 55.01952,-129.94714 23.23351,-104.8988 23.23351,-106.2034 55.24327,-130.20806 55.01952))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Danaus plexippus (Linnaeus, 1758)"
 ]
}

 The dataset includes 20577 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034961-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.727312
title: Planktic foraminifera counts of sediment core RC09-162
DOI: 10.15468/dl.qbq82t
title: Occurrence Download

description: A dataset containing 743 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aphyllon Mitch."
 ]
}

 The dataset includes 743 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034962-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.249439
title: Planktic foraminifera abundance of Hole 2-10

description: Relative abundance: D = dominant, A = abundant, C = common, F = few, R = rare, T = trace, P = present (numerical values are abundance in percent)
DOI: 10.15468/dl.4thd9o
title: Occurrence Download

description: A dataset containing 153570 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Merseyside BioBank (unverified)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 153570 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003500-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lcdrcm
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Cymopterus spellenbergii R.L.Hartm. & J.E.Larson",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003513-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.250687
title: Benthic foraminifera and algae abundance of Hole 81-552

description: Relative abundance: D = dominant, A = abundant, C = common, F = few, R = rare, T = trace, P = present (numerical values are abundance in percent)
DOI: 10.1594/pangaea.802362
title: (Table 2) Abundance, preservation, and distribution of calcareous nannofossils in ODP Hole 135-840A

description: Species abundance: V = very abundant (&gt;10 specimens per field of view), A = abundant (1-10 specimens per field of view), C = common (1 specimen in 2-10 fields of view), F = few (1 specimen in 11-100 fields of view), R = rare (1 specimen in 101-1000 fields of view), lowercase letters = reworked, ? = uncertain occurrence, - = absent.
DOI: 10.1594/pangaea.687732
title: Microplankton abundance at Station MARCH-1997-GN36199704601MSB06 in the euphotic zone of the Aegean Sea in spring 1997. Part 1 - diatoms

description: Microplankton species composition analysis was performed according to the inverted microscope method of Utermoehl. Samples for identification and enumeration of larger phytoplankton cells (&gt;5µm) were preserved in alkaline Lugol solution. Utermoehl, H., 1958. Zur Vervollkommung der quantitativen Phytoplankton-Methodik. Mitt. Int. Ver. Theor. Angew. Limnol., 9:1-38.
DOI: 10.1594/pangaea.317566
title: Benthic foraminiferal assemblage (dead) in MUC OB10-K, size fraction &gt;150 µm
DOI: 10.15468/dl.jahc2k
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dipsas sanctijoannis (Boulenger, 1911)"
 ]
}

 The dataset includes 59 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003512-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pdgvly
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003514-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zz0epv
title: Occurrence Download

description: A dataset containing 5293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-170 7,-50 7,-50 80,-170 80,-170 7))",
 "HasCoordinate is true",
 "TaxonKey is Pinus ponderosa Douglas ex C.Lawson",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5293 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003502-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v8mro2
title: Occurrence Download

description: A dataset containing 932225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Atlas Flora Danica",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 932225 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003528-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10684279
title: FHIRed MOTU data. FHIR-standardized data collection on the clinical rehabilitation pathway of trans-femoral amputation patients.

description: Dataset presented in the article "MOTU on FHIR: A 10-year data collection on the clinical rehabilitation pathway of 1006 trans-femoral amputees".

Data has been anonymised prior the publication. The data has been standardized in Fast Healthcare Interoperability Resources (FHIR) data standard. 

This work has been conducted within the framework of the MOTU++ project (PR19-PAI-P2).

This research was co-funded by the Complementary National Plan PNC-I.1 "Research initiatives for innovative technologies and pathways in the health and welfare sector” D.D. 931 of 06/06/2022, DARE - DigitAl lifelong pRevEntion initiative, code PNC0000002, CUP: (B53C22006450001) and by the Italian National Institute for Insurance against Accidents at Work (INAIL) within the MOTU++ project (PR19-PAI-P2).

Authors express their gratitude to all the AlmaHealthDB Team.

Instruction MOTU-to-FHIR Importer





The repository includes a Docker Compose setup for importing the MOTU dataset into a HAPI FHIR server, formatted as NDJSON following the HL7 FHIR R4 standards.

Prerequisites

Before you begin, ensure you have the following installed:



Docker 

Docker Compose

Python >=3.7 

Requests Python Library





How to run



First, unzip the dataset directory containing the NDJSON files.

Open a terminal or command prompt in the root directory of this repository.

Run the command docker-compose up in the terminal to start the Docker containers.

Once the containers are up and running, open another terminal window in the root directory of this repository.

Run the command python main.py in the terminal to start the data import process.

After the import process is complete, you can access the HAPI FHIR server by opening a web browser and navigating to http://localhost:8082.
DOI: 10.5281/zenodo.10684280
title: FHIRed MOTU data. MOTU on FHIR: A 10-year data collection on the clinical rehabilitation pathway of 1006 trans-femoral amputees.

description: Dataset presented in the article "MOTU on FHIR: A 10-year data collection on the clinical rehabilitation pathway of 1006 trans-femoral amputees".

Data has been anonymised prior the publication. The data has been standardized in Fast Healthcare Interoperability Resources (FHIR) data standard. 

This work has been conducted within the framework of the MOTU++ project (PR19-PAI-P2).

This research was co-funded by the Complementary National Plan PNC-I.1 "Research initiatives for innovative technologies and pathways in the health and welfare sector” D.D. 931 of 06/06/2022, DARE - DigitAl lifelong pRevEntion initiative, code PNC0000002, CUP: (B53C22006450001) and by the Italian National Institute for Insurance against Accidents at Work (INAIL) within the MOTU++ project (PR19-PAI-P2).

Authors express their gratitude to all the AlmaHealthDB Team.

Instruction MOTU-to-FHIR Importer





The repository includes a Docker Compose setup for importing the MOTU dataset into a HAPI FHIR server, formatted as NDJSON following the HL7 FHIR R4 standards.

Prerequisites

Before you begin, ensure you have the following installed:



Docker 

Docker Compose

Python >=3.7 

Requests Python Library





How to run



First, unzip the dataset directory containing the NDJSON files.

Open a terminal or command prompt in the root directory of this repository.

Run the command docker-compose up in the terminal to start the Docker containers.

Once the containers are up and running, open another terminal window in the root directory of this repository.

Run the command python main.py in the terminal to start the data import process.

After the import process is complete, you can access the HAPI FHIR server by opening a web browser and navigating to http://localhost:8082.
DOI: 10.15468/dl.bkjpbs
title: Occurrence Download

description: A dataset containing 1486 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centruroides Marx, 1890",
 "Country is Mexico"
 ]
}

 The dataset includes 1486 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015054-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fcvx6c
title: Occurrence Download

description: A dataset listing the 1231517521 species recorded in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 1231517521 records were derived from 20135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003410-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7jgvgk
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen)",
 "Country is Poland",
 "OccurrenceStatus is Present",
 "TaxonKey is Apis mellifera Linnaeus, 1758",
 "Year 2015-2021"
 ]
}

 The dataset's 2 records were derived from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048570-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggpncd
title: Occurrence Download

description: A dataset containing 29330224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "GadmGid is MEX",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 29330224 records from 2571 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048557-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jg7c39
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pedinophyceae",
 "HasCoordinate is true",
 "Country is one of (Sweden)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234960-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yhrtgp
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((4.47571 33.98718,34.52429 33.98718,34.52429 46.01282,4.47571 46.01282,4.47571 33.98718))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Poecilimon jonicus (Fieber, 1853)"
 ]
}

 The dataset includes 121 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104413-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-54701
title: Redemption tidings, vol. 35, nos. 1-46, 2 Jan. - 25 Dec. 1959

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.etf6ma
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Labyrinthulea",
 "HasCoordinate is true",
 "Country is one of (Sweden)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0235025-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s0xkoc
title: Occurrence Download

description: A dataset containing 3699 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Chondrohierax uncinatus (Temminck, 1822)"
 ]
}

 The dataset includes 3699 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002234-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-54707
title: Redemption tidings, vol. 35, nos. 1-46, 2 Jan. - 25 Dec. 1959

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.8u5cnh
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudocercospora subsessilis (Syd. & P.Syd.) Deighton",
 {
 "not" : {
 "Country" : [
 "is United States of America"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is Canada"
 ]
 }
 },
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 }
 ]
}

 The dataset includes 59 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104899-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-53497
title: The gift of prophecy, 1909[?]

description: [description english/roman)] Published lecture entitled "Gift of prophecy" originally delivered by T.B. Barratt at the London Pentecostal Conference, May, 1909, and edited for publication after 14 July 1909. A booklet investigating prophecy as a gift of the Spirit [44 pages].
DOI: 10.15468/dl.2vebr8
title: Occurrence Download

description: A dataset containing 1052 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Grus nigricollis Prjevalsky, 1876"
 ]
}

 The dataset includes 1052 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0235073-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.