cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.624qh6
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Begonia meyeri-johannis",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 242 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028433-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwwgwr
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Caleta caleta"
 ]
}

 The dataset includes 65 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028434-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6uwpd9
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carthamus lanatus",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028438-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8jg4kr
title: Occurrence Download

description: A dataset containing 3295 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Caleta"
 ]
}

 The dataset includes 3295 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028437-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qm9pmg
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carthamus lanatus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 289 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028439-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhfkdk
title: Occurrence Download

description: A dataset containing 16118 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cotula australis"
 ]
}

 The dataset includes 16118 records from 356 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028435-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8m4dv
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Deraeocoris lutescens",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 178 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028440-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xgh463
title: Occurrence Download

description: A dataset containing 1782 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crambe filiformis"
 ]
}

 The dataset includes 1782 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028441-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6me4z
title: Occurrence Download

description: A dataset containing 432 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glionnetia sericea"
 ]
}

 The dataset includes 432 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028442-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.627ud8
title: Occurrence Download

description: A dataset containing 1430 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Otholobium mexicanum"
 ]
}

 The dataset includes 1430 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028443-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxb3vz
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mus musculus",
 "Country is Angola",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028444-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vp2wr2
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-58.05405 -12.54254,-64.86286 -32.96897,-62.53353 -38.88188,-51.24525 -39.06106,-33.86486 -28.13113,-58.05405 -12.54254))",
 "TaxonKey is Pomacea scalaris"
 ]
}

 The dataset includes 52 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028446-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xpsphw
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Torilis nodosa",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028447-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15976112
title: CEX Project - GoldStandard Fulltext

description: This gold standard collection comprises 107 scholarly articles, from 27 disciplines (according to the Scimago subject categories), each represented in multiple structured formats to support research on document processing, citation analysis, and linked data modeling.

The list of all articles is provided in the GS_info.txt file. If an entry is marked as “Restricted”, it means that the corresponding PDF is not Open Access. As a result, these PDFs are not included in the dataset and cannot be found in the GoldStandard_PDF folder. On the other hand, all articles that are Open Access are shared in this folder in their original PDF format.

For each article, we provide four complementary files, designed to capture the document’s content, structure, and citation information comprehensively:





The original PDF, available for Open Access papers, preserves the published layout and formatting of the article.




A TEI XML file, which is a full-text, machine-readable version of the article encoded using the Text Encoding Initiative (TEI) guidelines. This XML representation includes the article’s title, authors, affiliations, and publication metadata. It also provides a detailed structure of the text, segmented into sections, paragraphs, and subsections, and marks up figures, tables, and formulas. In addition, in-text citations are linked to their respective bibliographic references, and persistent identifiers such as DOIs and ORCIDs are embedded when available.




A JSON file containing citation annotations, which maps each in-text citation pointer  to its context within the article. Specifically, for every citation, this file identifies the section where it appears (first-level section if numbered), the complete sentence in which the citation is found, and the corresponding bibliographic reference. This format serves as a ground truth for tasks such as citation extraction and reference linking.




A JSON-LD file, which provides a Linked Data representation of the article. This file is compliant with the OCDM v2.0.1 specification and is intended to facilitate the integration of scholarly content into semantic web applications and knowledge graphs.



All TEI XML files were generated using Grobid (version 0.8.2), while the JSON and JSON-LD files were produced using the CEX tool. Importantly, each of these files has been carefully manually corrected and refined to ensure accuracy and reliability.
DOI: 10.5281/zenodo.16310561
title: CEX Project - GoldStandard Fulltext

description: This gold standard collection comprises 107 scholarly articles, from 27 disciplines (according to the Scimago subject categories), each represented in multiple structured formats to support research on document processing, citation analysis, and linked data modeling.

The list of all articles is provided in the GS_info.txt file. If an entry is marked as “Restricted”, it means that the corresponding PDF is not Open Access. As a result, these PDFs are not included in the dataset and cannot be found in the GoldStandard_PDF folder. On the other hand, all articles that are Open Access are shared in this folder in their original PDF format.

For each article, we provide four complementary files, designed to capture the document’s content, structure, and citation information comprehensively:





The original PDF, available for Open Access papers, preserves the published layout and formatting of the article.




A TEI XML file, which is a full-text, machine-readable version of the article encoded using the Text Encoding Initiative (TEI) guidelines. This XML representation includes the article’s title, authors, affiliations, and publication metadata. It also provides a detailed structure of the text, segmented into sections, paragraphs, and subsections, and marks up figures, tables, and formulas. In addition, in-text citations are linked to their respective bibliographic references, and persistent identifiers such as DOIs and ORCIDs are embedded when available.




A JSON file containing citation annotations, which maps each in-text citation pointer  to its context within the article. Specifically, for every citation, this file identifies the section where it appears (first-level section if numbered), the complete sentence in which the citation is found, and the corresponding bibliographic reference. This format serves as a ground truth for tasks such as citation extraction and reference linking.




A JSON-LD file, which provides a Linked Data representation of the article. This file is compliant with the OCDM v2.0.1 specification and is intended to facilitate the integration of scholarly content into semantic web applications and knowledge graphs.



All TEI XML files were generated using Grobid (version 0.8.2), while the JSON and JSON-LD files were produced using the CEX tool. Importantly, each of these files has been carefully manually corrected and refined to ensure accuracy and reliability.
DOI: 10.15468/dl.pugcuz
title: Occurrence Download

description: A dataset containing 4847 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crambe hispanica"
 ]
}

 The dataset includes 4847 records from 156 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028445-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csty7y
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Begonia wollastonii",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 15 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028448-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16317464
title: Tangled Nature model simulations

description: Collection of Tangled Nature model simulations, presented in the form of networks. Each simulation is associated to two files, one for the genomes, one for the population of each extant genome. In these files, each line contains the extant species at each generation, for a total of approximately 100,000 generations. The repository also contains the interaction matrix used to perform all the simulations.
DOI: 10.5281/zenodo.16317465
title: Tangled Nature model simulations

description: Collection of Tangled Nature model simulations, presented in the form of networks. Each simulation is associated to two files, one for the genomes, one for the population of each extant genome. In these files, each line contains the extant species at each generation, for a total of approximately 100,000 generations. The repository also contains the interaction matrix used to perform all the simulations.
DOI: 10.15468/dl.6eapwk
title: Occurrence Download

description: A dataset containing 747 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Macroinvertebrate and algae occurrence data collection of the Laboratorio de Ecología Acuática of the Universidad de Cuenca"
 ]
}

 The dataset includes 747 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028449-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvqs4e
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Muscardinus avellanarius)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028450-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.whehu5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Muscardinus avellanarius)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028452-250717081556266/datasets/export for details.
DOI: 10.15468/dl.k7qjay
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Muscardinus avellanarius)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028451-250717081556266/datasets/export for details.
DOI: 10.15468/dl.segk52
title: Occurrence Download

description: A dataset containing 718 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mus musculus",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 718 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028453-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a4zkgv
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paralithodes camtschaticus",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 73 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028455-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wu62yw
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mus musculus",
 "Country is Bosnia and Herzegovina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028454-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.njpes7
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paralithodes camtschaticus",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 31 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028456-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dd.zgnw9m
title: Dataset generated from Esri tool

description: Derived dataset generated by Esri geoprocessing tool using GBIF API
DOI: 10.6084/m9.figshare.28540559.v1
title: Data obtained for publication Scien. Rep. 14, 2024, 12617

description: Data obtained for publication Scien. Rep. 14, 2024, 12617
DOI: 10.15468/dl.wffhhe
title: Occurrence Download

description: A dataset containing 208 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Craspedia alba"
 ]
}

 The dataset includes 208 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028457-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qx39td
title: Occurrence Download

description: A dataset containing 1460 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Craspedia aurantia"
 ]
}

 The dataset includes 1460 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028458-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29580695
title: patient data

description: patient data
DOI: 10.6084/m9.figshare.29580695.v1
title: patient data

description: patient data
DOI: 10.6084/m9.figshare.29580695.v2
title: patient data

description: patient data
DOI: 10.15468/dl.4ca72j
title: Occurrence Download

description: A dataset containing 292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (90fd6680-349f-11d8-aa2d-b8a03c50a862, 8e1a97a0-3ca8-11d9-8439-b8a03c50a862, 253fc67c-c7fb-4c85-88f5-43ac6d9dc8a9, bc092ff0-02e4-11dc-991f-b8a03c50a862, 2e149736-4cc6-44d4-a068-ccb2041baf75, 6ba9a8cc-513a-4a51-bf93-6f5de8040a96, f0b6a090-a4c6-11d8-9534-b8a03c50a862, 335880a0-e2e1-11dd-8102-b8a03c50a862, 4e11d750-bafb-11d9-8e53-b8a03c50a862)",
 "TaxonKey is Begonia glabra"
 ]
}

 The dataset includes 292 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028459-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16047331
title: HyEco-R: Integrated Hydrodynamic & Water Quality Simulations for Flood-Prone Urban Metropolis

description: This study presents an integrated modeling approach, utilizing the HyEco-R framework, to understand the transport and fate of Escherichia coli (E. coli) and to assess associated human health risks in Delhi, the national capital territory of India. Hydrodynamic simulations, performed using a 3-way coupled hydrodynamic model in MIKE+, provided essential insights into flow dynamics. These were coupled with a water quality model, developed in MIKE+ ECO Lab, to simulate E. coli concentrations under varying environmental conditions. The model outputs reveal critical hotspots and periods of elevated E. coli levels, highlighting the influence of contaminated urban floodwaters on bacterial transport. Subsequently, the simulated E. coli concentrations were used to develop human health risk maps, identifying areas and populations vulnerable to waterborne pathogen exposure. The findings contribute to a comprehensive understanding of microbial contamination pathways and provide valuable insights for targeted water resource management strategies to mitigate public health risks.