cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.2598803
title: Expression and purification of HTT79-3144 with and without HAP40 from Sf9 Insect cells - 2019/01/28

description: <strong>Project: </strong>Biophysical investigation of purified HTT protein samples

<strong>Experiment: </strong>Expression and purification of HTT<sup>79-3144 </sup>with and without HAP40 from Sf9 Insect cells

<strong>Date completed:­ </strong>2019/01/28

<strong>Rationale: </strong>HTT lacking the unstructured region of exon1 (aa. 1-78 which are not resolved in the cryoEM model PDB ID 6EZ8) may serve as a useful control when determining exon1-dependent functionality of the HTT protein. Apo and HAP40-bound HTT<sup>79-3144 </sup>will be produced from Sf9 insect cell expression system.
description: Dr. Harding is the recipient of the Huntington's Disease Society of America Berman Topper Career Development Fellowship which funds and supports this research, in addition to generous funding from the CHDI Foundation and the Huntington Society of Canada. The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.5281/zenodo.2598804
title: Expression and purification of HTT79-3144 with and without HAP40 from Sf9 Insect cells - 2019/01/28

description: <strong>Project: </strong>Biophysical investigation of purified HTT protein samples

<strong>Experiment: </strong>Expression and purification of HTT<sup>79-3144 </sup>with and without HAP40 from Sf9 Insect cells

<strong>Date completed:­ </strong>2019/01/28

<strong>Rationale: </strong>HTT lacking the unstructured region of exon1 (aa. 1-78 which are not resolved in the cryoEM model PDB ID 6EZ8) may serve as a useful control when determining exon1-dependent functionality of the HTT protein. Apo and HAP40-bound HTT<sup>79-3144 </sup>will be produced from Sf9 insect cell expression system.
description: Dr. Harding is the recipient of the Huntington's Disease Society of America Berman Topper Career Development Fellowship which funds and supports this research, in addition to generous funding from the CHDI Foundation and the Huntington Society of Canada. The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.5517/ccdc.csd.cc20m10q
title: CCDC 1865332: Experimental Crystal Structure Determination

description: Related Article: Jiao Ji, Xin Chen, Chang-Jiu Wang, Ai-Quan Jia, Qian-Feng Zhang|2019|J.Coord.Chem.|72|480|doi:10.1080/00958972.2019.1566541
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20m11r
title: CCDC 1865333: Experimental Crystal Structure Determination

description: Related Article: Jiao Ji, Xin Chen, Chang-Jiu Wang, Ai-Quan Jia, Qian-Feng Zhang|2019|J.Coord.Chem.|72|480|doi:10.1080/00958972.2019.1566541
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20m12s
title: CCDC 1865334: Experimental Crystal Structure Determination

description: Related Article: Jiao Ji, Xin Chen, Chang-Jiu Wang, Ai-Quan Jia, Qian-Feng Zhang|2019|J.Coord.Chem.|72|480|doi:10.1080/00958972.2019.1566541
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.2598683
title: Modelling Kepler red giants in eclipsing binaries: calibrating the mixing-length parameter with asteroseismology

description: MESA inlists associated with Li et al. (2018). MESA version 8118.

Publication DOI: 10.1093/mnras/stx3079
DOI: 10.5281/zenodo.2598684
title: Modelling Kepler red giants in eclipsing binaries: calibrating the mixing-length parameter with asteroseismology

description: MESA inlists associated with Li et al. (2018). MESA version 8118.

Publication DOI: 10.1093/mnras/stx3079
DOI: 10.5281/zenodo.2598798
title: Supplementary Material to "The Rosa genome provides new insights into the domestication of modern roses" publication.

description: A dataset corresponding to GC-MS acquired targeted metabolite profiling in 6 rose cultivars and 3 plant parts, provided as supplementary material to the publication "The <em>Rosa</em> genome provides new insights into the domestication of modern roses" , which appeared in Nature Genetics <strong>volume 50</strong>, pages772–777 (2018) (https://doi.org/10.1038/s41588-018-0110-3). The table in this upload was packaged in the following archive available from https://static-content.springer.com/esm/art%3A10.1038%2Fs41588-018-0110-3/MediaObjects/41588_2018_110_MOESM3_ESM.zip
description: {"references": ["https://doi.org/10.1038/s41588-018-0110-3"]}
DOI: 10.5281/zenodo.2598799
title: Supplementary Material to "The Rosa genome provides new insights into the domestication of modern roses" publication.

description: A dataset corresponding to GC-MS acquired targeted metabolite profiling in 6 rose cultivars and 3 plant parts, provided as supplementary material to the publication "The <em>Rosa</em> genome provides new insights into the domestication of modern roses" , which appeared in Nature Genetics <strong>volume 50</strong>, pages772–777 (2018) (https://doi.org/10.1038/s41588-018-0110-3). The table in this upload was packaged in the following archive available from https://static-content.springer.com/esm/art%3A10.1038%2Fs41588-018-0110-3/MediaObjects/41588_2018_110_MOESM3_ESM.zip
description: {"references": ["https://doi.org/10.1038/s41588-018-0110-3"]}
DOI: 10.5517/ccdc.csd.cc20mcst
title: CCDC 1865666: Experimental Crystal Structure Determination

description: Related Article: Loïc P. Mangin, Davit Zargarian|2019|Organometallics|38|1479|doi:10.1021/acs.organomet.8b00899
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20mctv
title: CCDC 1865667: Experimental Crystal Structure Determination

description: Related Article: Loïc P. Mangin, Davit Zargarian|2019|Organometallics|38|1479|doi:10.1021/acs.organomet.8b00899
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20mcvw
title: CCDC 1865668: Experimental Crystal Structure Determination

description: Related Article: Loïc P. Mangin, Davit Zargarian|2019|Organometallics|38|1479|doi:10.1021/acs.organomet.8b00899
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20qkt4
title: CCDC 1868736: Experimental Crystal Structure Determination

description: Related Article: Tao Tao, Xiao-Lei Zhao, Yuan-Yuan Wang, Hui-Fen Qian, Wei Huang|2019|Dyes Pigm.|166|226|doi:10.1016/j.dyepig.2019.03.046
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20qkv5
title: CCDC 1868737: Experimental Crystal Structure Determination

description: Related Article: Tao Tao, Xiao-Lei Zhao, Yuan-Yuan Wang, Hui-Fen Qian, Wei Huang|2019|Dyes Pigm.|166|226|doi:10.1016/j.dyepig.2019.03.046
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20tj3h
title: CCDC 1871566: Experimental Crystal Structure Determination

description: Related Article: Ying He, Yanbin Zhang, Lukasz Wojtas, Novruz G. Akhmedov, David Thai, Heng Wang, Xiaopeng Li, Hao Guo, Xiaodong Shi|2019|Chemical Science|10|4192|doi:10.1039/C9SC00190E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20tj4j
title: CCDC 1871567: Experimental Crystal Structure Determination

description: Related Article: Ying He, Yanbin Zhang, Lukasz Wojtas, Novruz G. Akhmedov, David Thai, Heng Wang, Xiaopeng Li, Hao Guo, Xiaodong Shi|2019|Chemical Science|10|4192|doi:10.1039/C9SC00190E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15151/esrf-es-186715637
title: Tetanus neurotoxin in complex with two Fab human monoclonal antibodies
DOI: 10.5063/f19k48hn
title: Compiled statewide Alaskan daily salmon escapement counts, 1922-2017

description: As salmon migrate from the marine environment to freshwater streams to spawn, a certain number are allowed to pass through, or 'escape' the salmon fishery (frequently located near the mouth of the freshwater stream) as a management strategy to preserve the species. Escapement data are the enumeration of these migrating fish as they pass upstream, and represent an index of the total abundance of spawning salmon in that particular stream. These data are important for fisheries management, since most salmon harvest occurs in freshwater rivers during this migration. Escapement data are collected in a variety of ways. Stationary projects utilize observers stationed along freshwater corridors who count salmon as they pass upriver through weirs or past elevated towers. Sonar equipment placed in the river can also give a stationary escapement count. These counts usually represent a sample, and are expanded to represent a 24h period. Escapement data can also be collected using aerial surveys, where observers in an aircraft provide an index to estimate escapement. In general, escapement counts do not represent total abundance, but instead an index of abundance. Surveys are usually timed to coincide with peak spawning activity, generally in the summer, but in the case of Coho salmon in the fall as well. Some data about non-salmon species are also included. This dataset contains compiled data from a number of sources. The .Rmd merges all datasets, identifies and flags duplicate records, and performs quality assurance checks by filtering and graphing results. These escapement data are merged with a location dataset ('Escapement_locations.csv') to connect escapement counts with detailed information about the sampling locations.This merged dataset is stored as 'Escapement_locations_linked.csv
DOI: 10.5517/ccdc.csd.cc20tq5r
title: CCDC 1871754: Experimental Crystal Structure Determination

description: Related Article: Ying He, Yanbin Zhang, Lukasz Wojtas, Novruz G. Akhmedov, David Thai, Heng Wang, Xiaopeng Li, Hao Guo, Xiaodong Shi|2019|Chemical Science|10|4192|doi:10.1039/C9SC00190E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20xx84
title: CCDC 1874826: Experimental Crystal Structure Determination

description: Related Article: Xinfang Liu, Liyong Du, Yufang Wang, Rongfang Li, Xun Feng, Yuqiang Ding|2019|J.Mol.Struct.|1186|224|doi:10.1016/j.molstruc.2019.03.036
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20xx95
title: CCDC 1874827: Experimental Crystal Structure Determination

description: Related Article: Xinfang Liu, Liyong Du, Yufang Wang, Rongfang Li, Xun Feng, Yuqiang Ding|2019|J.Mol.Struct.|1186|224|doi:10.1016/j.molstruc.2019.03.036
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20y3lp
title: CCDC 1875022: Experimental Crystal Structure Determination

description: Related Article: Lin Wang, Helfried Neumann, Matthias Beller|2019|Angew.Chem.,Int.Ed.|58|5417|doi:10.1002/anie.201814146
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20z1z1
title: CCDC 1875933: Experimental Crystal Structure Determination

description: Related Article: Manish Rawat, Diwan S. Rawat|2019|Tetrahedron Lett.|60|1153|doi:10.1016/j.tetlet.2019.03.048
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20zh4n
title: CCDC 1876341: Experimental Crystal Structure Determination

description: Related Article: Philipp Niermeier, Sebastian Blomeyer, Younes K. J. Bejaoui, J. Louis Beckmann, Beate Neumann, Hans-Georg Stammler, Norbert W. Mitzel|2019|Angew.Chem.,Int.Ed.|58|1965|doi:10.1002/anie.201812696
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/kttjwc25rb.1
title: Data for: Antibacterial and antioxidant flavonoid derivatives from the fruits of Metaplexis japonica

description: NMR spectrum for compounds 1-9 were available
DOI: 10.5281/zenodo.2557893
title: Frictionless Tabular Data Package for GC-MS data from  the 'Rose Genome' article published in Nature genetics, June, 2018

description: This dataset, in the form of a Frictionless Tabular Data Package (https://frictionlessdata.io/specs/tabular-data-package/), holds the measurements of 61 known metabolites (all annotated with resolvable CHEBI identifiers and InChi strings), measured by gas chromatography mass-spectrometry (GC-MS) in 6 different Rose cultivars (all annotated with resolvable NCBITaxonomy Identifiers) and 3 organism parts (all annotated with resolvable Plant Ontology identifiers). The quantitation types are annotated with resolvable STATO terms.  

The data was extracted from a supplementary material table, available from https://static-content.springer.com/esm/art%3A10.1038%2Fs41588-018-0110-3/MediaObjects/41588_2018_110_MOESM3_ESM.zip  and published alongside the Nature Genetics manuscript identified by the following doi: https://doi.org/10.1038/s41588-018-0110-3, published in June 2018. This supplementary material table was deposited to Zenodo and is identified by the following doi: https://doi.org/10.5281/zenodo.2598799

This dataset is used to demonstrate how to make data Findable, Accessible, Discoverable and Interoperable (FAIR) and how Frictionless Tabular Data Package representations can be easily mobilised for reanalysis and data science.

It is associated to the following project: https://github.com/proccaserra/rose2018ng-notebook with all the necessary information, executable code and tutorials in the form of Jupyter notebooks.
description: {"references": ["https://doi.org/10.1038/s41588-018-0110-3"]}
DOI: 10.5281/zenodo.2557894
title: Frictionless Tabular Data Package for GC-MS data from  the 'Rose Genome' article published in Nature genetics, June, 2018

description: This dataset, in the form of a Frictionless Tabular Data Package (https://frictionlessdata.io/specs/tabular-data-package/), holds the measurements of 61 known metabolites (all annotated with resolvable CHEBI identifiers and InChi strings), measured by gas chromatography mass-spectrometry (GC-MS) in 6 different Rose cultivars (all annotated with resolvable NCBITaxonomy Identifiers) and 3 organism parts (all annotated with resolvable Plant Ontology identifiers). The quantitation types are annotated with resolvable STATO terms.  

The data was extracted from a supplementary material table, available from https://static-content.springer.com/esm/art%3A10.1038%2Fs41588-018-0110-3/MediaObjects/41588_2018_110_MOESM3_ESM.zip  and published alongside the Nature Genetics manuscript identified by the following doi: https://doi.org/10.1038/s41588-018-0110-3, published in June 2018. This supplementary material table was deposited to Zenodo and is identified by the following doi: https://doi.org/10.5281/zenodo.2598799

This dataset is used to demonstrate how to make data Findable, Accessible, Discoverable and Interoperable (FAIR) and how Frictionless Tabular Data Package representations can be easily mobilised for reanalysis and data science.

It is associated to the following project: https://github.com/proccaserra/rose2018ng-notebook with all the necessary information, executable code and tutorials in the form of Jupyter notebooks.
description: {"references": ["https://doi.org/10.1038/s41588-018-0110-3"]}
DOI: 10.5281/zenodo.2598807
title: Expression and purification of PARP1 from Sf9 Insect cells 2019/02/04

description: <strong>Project: </strong>Investigating HTT parylation and PAR-binding in its putative role in DNA damage repair

<strong>Experiment: </strong>Expression and purification of PARP1 from Sf9 Insect cells

<strong>Date completed:­ </strong>2019/02/04

<strong>Rationale: </strong>HTT may be parylated or recognize PAR motifs on other proteins involved in DNA damage repair. To test this hypothesis, the full-length PARP1 cDNA was cloned in to pFBOH-SBP-TEV-LIC, overexpressed in insect cell Sf9 culture and purified. The purified PARP1 protein will be shared with Dr. Tamara Maiuri for her future experiments on the link between HTT protein and parylation.
description: Dr. Harding is the recipient of the Huntington's Disease Society of America Berman Topper Career Development Fellowship which funds and supports this research, in addition to generous funding from the CHDI Foundation and the Huntington Society of Canada. The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.5281/zenodo.2598808
title: Expression and purification of PARP1 from Sf9 Insect cells 2019/02/04

description: <strong>Project: </strong>Investigating HTT parylation and PAR-binding in its putative role in DNA damage repair

<strong>Experiment: </strong>Expression and purification of PARP1 from Sf9 Insect cells

<strong>Date completed:­ </strong>2019/02/04

<strong>Rationale: </strong>HTT may be parylated or recognize PAR motifs on other proteins involved in DNA damage repair. To test this hypothesis, the full-length PARP1 cDNA was cloned in to pFBOH-SBP-TEV-LIC, overexpressed in insect cell Sf9 culture and purified. The purified PARP1 protein will be shared with Dr. Tamara Maiuri for her future experiments on the link between HTT protein and parylation.
description: Dr. Harding is the recipient of the Huntington's Disease Society of America Berman Topper Career Development Fellowship which funds and supports this research, in addition to generous funding from the CHDI Foundation and the Huntington Society of Canada. The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.