cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4592146
title: xrep-4 data

description: Data to accompany Wu et al. paper on xrep-4 regulation of oxidative stress response
DOI: 10.6084/m9.figshare.4592134
title: Optical Coherence Angiographic Demonstration of Retinal Changes From Chronic Optic Neuropathies

description: Glaucoma causes a decrease in peripapillary perfused capillary density on optical coherence tomography (OCT) angiography. However, other chronic optic neuropathies have not been explored with OCT angiography to see if these changes were specific to glaucoma. The authors evaluated OCT angiography in 10 patients who suffered various kinds of chronic optic neuropathies, including optic neuritis and ischaemic optic neuropathy, and found that all optic neuropathies showed a decrease in peripapillary vessel density on OCT angiography, regardless of the aetiology of the optic neuropathy. The peripapillary vessel loss on OCT angiography correlated well with the areas of retinal nerve fibre layer thinning seen on OCT.
DOI: 10.6084/m9.figshare.4592128
title: Heteroscedasticity as a Basis of Direction Dependence in Reversible Linear Regression Models

description: Heteroscedasticity is a well-known issue in linear regression modeling. When heteroscedasticity is observed, researchers are advised to remedy possible model misspecification of the explanatory part of the model (e.g., considering alternative functional forms and/or omitted variables). The present contribution discusses another source of heteroscedasticity in observational data: Directional model misspecifications in the case of nonnormal variables. Directional misspecification refers to situations where alternative models are equally likely to explain the data-generating process (e.g., <i>x</i> → <i>y</i> versus <i>y</i> → <i>x</i>). It is shown that the homoscedasticity assumption is likely to be violated in models that erroneously treat true nonnormal predictors as response variables. Recently, Direction Dependence Analysis (DDA) has been proposed as a framework to empirically evaluate the direction of effects in linear models. The present study links the phenomenon of heteroscedasticity with DDA and describes visual diagnostics and nine homoscedasticity tests that can be used to make decisions concerning the direction of effects in linear models. Results of a Monte Carlo simulation that demonstrate the adequacy of the approach are presented. An empirical example is provided, and applicability of the methodology in cases of violated assumptions is discussed.
DOI: 10.6084/m9.figshare.4592128.v1
title: Heteroscedasticity as a Basis of Direction Dependence in Reversible Linear Regression Models

description: Heteroscedasticity is a well-known issue in linear regression modeling. When heteroscedasticity is observed, researchers are advised to remedy possible model misspecification of the explanatory part of the model (e.g., considering alternative functional forms and/or omitted variables). The present contribution discusses another source of heteroscedasticity in observational data: Directional model misspecifications in the case of nonnormal variables. Directional misspecification refers to situations where alternative models are equally likely to explain the data-generating process (e.g., <i>x</i> → <i>y</i> versus <i>y</i> → <i>x</i>). It is shown that the homoscedasticity assumption is likely to be violated in models that erroneously treat true nonnormal predictors as response variables. Recently, Direction Dependence Analysis (DDA) has been proposed as a framework to empirically evaluate the direction of effects in linear models. The present study links the phenomenon of heteroscedasticity with DDA and describes visual diagnostics and nine homoscedasticity tests that can be used to make decisions concerning the direction of effects in linear models. Results of a Monte Carlo simulation that demonstrate the adequacy of the approach are presented. An empirical example is provided, and applicability of the methodology in cases of violated assumptions is discussed.
DOI: 10.6084/m9.figshare.4592146.v1
title: xrep-4 data

description: Data to accompany Wu et al. paper on xrep-4 regulation of oxidative stress response
DOI: 10.6084/m9.figshare.4592146.v3
title: xrep-4 data

description: Data to accompany Wu et al. paper on xrep-4 regulation of oxidative stress response
DOI: 10.6084/m9.figshare.4592146.v2
title: xrep-4 data

description: Data to accompany Wu et al. paper on xrep-4 regulation of oxidative stress response
DOI: 10.6084/m9.figshare.4591972
title: Analyse de termes par discipline (plateforme ISIDORE)

description: L'objectif est d'observer l'utilisation des expressions "système urbain" et "système de villes" dans la recherche SHS francophone grâce au méta-portail ISIDORE. Les effectifs et les fréquences pondérées des ressources scientifiques associées à ces expressions permettent d'obtenir un point de vue quantitatif de la pratique de la recherche sur les systèmes urbains par discipline.<br>
DOI: 10.6084/m9.figshare.4591933
title: A molecular study of the wastewater contaminants atenolol and atrazine in 1-<i>n</i>-butyl-3-methylimidazolium based ionic liquids for potential treatment applications

description: The use of room temperature ionic liquids (ILs) as novel solvents in a range of industrial separation processes has received tremendous attention and research. Here, we investigate the potential application of ILs to remove the wastewater contaminants atenolol and atrazine. Specifically, using molecular simulation we predict IL/water partition coefficients of atenolol and atrazine in seven common 1-<i>n</i>-butyl-3-methylimidazolium based ILs and investigate the underlying structural details. We find that atenolol and atrazine have a large affinity for the ILs over water. With a solute mole fraction of 0.1, the IL characteristic structure is virtually unchanged, suggesting ILs are able to accommodate the solutes well. Additionally, we demonstrate that within an IL, the solute affinity for the IL can be greatly improved by selecting an anion and/or cation that interacts strongly with the solute.
DOI: 10.6084/m9.figshare.4591918
title: ICCS keyword clouds

description: Word clouds for author keywords for papers of International Conference on Computational Science published from 2007 to 2017.
DOI: 10.6084/m9.figshare.4591972.v2
title: Analyse de termes par discipline (plateforme ISIDORE)

description: L'objectif est d'observer l'utilisation des expressions "système urbain" et "système de villes" dans la recherche SHS francophone grâce au méta-portail ISIDORE. Les effectifs et les fréquences pondérées des ressources scientifiques associées à ces expressions permettent d'obtenir un point de vue quantitatif de la pratique de la recherche sur les systèmes urbains par discipline.<br>
DOI: 10.6084/m9.figshare.4591933.v1
title: A molecular study of the wastewater contaminants atenolol and atrazine in 1-<i>n</i>-butyl-3-methylimidazolium based ionic liquids for potential treatment applications

description: The use of room temperature ionic liquids (ILs) as novel solvents in a range of industrial separation processes has received tremendous attention and research. Here, we investigate the potential application of ILs to remove the wastewater contaminants atenolol and atrazine. Specifically, using molecular simulation we predict IL/water partition coefficients of atenolol and atrazine in seven common 1-<i>n</i>-butyl-3-methylimidazolium based ILs and investigate the underlying structural details. We find that atenolol and atrazine have a large affinity for the ILs over water. With a solute mole fraction of 0.1, the IL characteristic structure is virtually unchanged, suggesting ILs are able to accommodate the solutes well. Additionally, we demonstrate that within an IL, the solute affinity for the IL can be greatly improved by selecting an anion and/or cation that interacts strongly with the solute.
DOI: 10.6084/m9.figshare.4591972.v1
title: Analyse de termes par discipline (plateforme ISIDORE)

description: L'objectif est d'observer l'utilisation des expressions "système urbain" et "système de villes" dans la recherche SHS francophone grâce au méta-portail ISIDORE. Les effectifs et les fréquences pondérées des ressources scientifiques associées à ces expressions permettent d'obtenir un point de vue quantitatif de la pratique de la recherche sur les systèmes urbains par discipline.<br>
DOI: 10.6084/m9.figshare.4591855
title: A geovisual analytics exploration of the OpenStreetMap crowd

description: It is sometimes easy to forget that massive crowdsourced data products such as Wikipedia and OpenStreetMap (OSM) are the sum of individual human efforts stemming from a variety of personal and institutional interests. We present a geovisual analytics tool called Crowd Lens for OpenStreetMap designed to help professional users of OSM make sense of the characteristics of the “crowd” that constructed OSM in specific places. The tool uses small multiple maps to visualize each contributor’s piece of the crowdsourced whole, and links OSM features with the free-form commit messages supplied by their contributors. Crowd Lens allows sorting and filtering contributors by characteristics such as number of contributions, most common language used, and OSM attribute tags applied. We describe the development and evaluation of Crowd Lens, showing how a multiple-stage user-centered design process (including testing by geospatial technology professionals) helped shape the tool’s interface and capabilities. We also present a case study using Crowd Lens to examine cities in six continents. Our findings should assist institutions deliberating OSM’s fitness for use for different applications. Crowd Lens is also potentially informative for researchers studying Internet participation divides and ways that crowdsourced products can be better comprehended with visual analytics methods.
DOI: 10.6084/m9.figshare.4591855.v1
title: A geovisual analytics exploration of the OpenStreetMap crowd

description: It is sometimes easy to forget that massive crowdsourced data products such as Wikipedia and OpenStreetMap (OSM) are the sum of individual human efforts stemming from a variety of personal and institutional interests. We present a geovisual analytics tool called Crowd Lens for OpenStreetMap designed to help professional users of OSM make sense of the characteristics of the “crowd” that constructed OSM in specific places. The tool uses small multiple maps to visualize each contributor’s piece of the crowdsourced whole, and links OSM features with the free-form commit messages supplied by their contributors. Crowd Lens allows sorting and filtering contributors by characteristics such as number of contributions, most common language used, and OSM attribute tags applied. We describe the development and evaluation of Crowd Lens, showing how a multiple-stage user-centered design process (including testing by geospatial technology professionals) helped shape the tool’s interface and capabilities. We also present a case study using Crowd Lens to examine cities in six continents. Our findings should assist institutions deliberating OSM’s fitness for use for different applications. Crowd Lens is also potentially informative for researchers studying Internet participation divides and ways that crowdsourced products can be better comprehended with visual analytics methods.
DOI: 10.6084/m9.figshare.4591918.v4
title: ICCS keyword clouds

description: Word clouds for author keywords for papers of International Conference on Computational Science published from 2007 to 2017.
DOI: 10.6084/m9.figshare.4591918.v3
title: ICCS keyword clouds

description: Word clouds for author keywords for papers of International Conference on Computational Science published from 2007 to 2016.
DOI: 10.6084/m9.figshare.4591777
title: Response of rocket salad germplasm (<i>Eruca</i> and <i>Diplotaxis</i> spp.) to major pathogens causing damping-off, wilting and leaf spot diseases

description: In the present study, 26 accessions of rocket salad belonging to four species (<i>Eruca sativa</i> Mill., <i>Diplotaxis tenuifolia</i> (L.) DC<i>.</i>, <i>Diplotaxis muralis</i> (L.) DC. and <i>Erucastrum spp</i>.) were tested for resistance to damping-off, wilting and leaf spot disease causal agents. High susceptibility to <i>Rhizoctonia solani</i> was detected in all accessions while variability in rocket seedling susceptibility for <i>Sclerotinia</i> assays was observed. Susceptibility to wilting caused by the fungus <i>Fusarium oxysporum</i> f. sp. <i>raphani</i> was tested. <i>E. sativa</i> varieties exhibited a lower severity degree associated to yellowing-related symptoms compared to <i>D. tenuifolia</i>. Resistance assay using the bacterium <i>Xanthomonas campestris</i> pv. <i>campestris</i> was also performed. Five <i>E. sativa</i> varieties showed a disease incidence lower than 60% while all the <i>D. tenuifolia</i> accessions, showed a susceptibility of 100%. The present study represents a step towards the identification of genetic resources useful in breeding for the selections of novel resistant varieties.
DOI: 10.6084/m9.figshare.4591777.v1
title: Response of rocket salad germplasm (<i>Eruca</i> and <i>Diplotaxis</i> spp.) to major pathogens causing damping-off, wilting and leaf spot diseases

description: In the present study, 26 accessions of rocket salad belonging to four species (<i>Eruca sativa</i> Mill., <i>Diplotaxis tenuifolia</i> (L.) DC<i>.</i>, <i>Diplotaxis muralis</i> (L.) DC. and <i>Erucastrum spp</i>.) were tested for resistance to damping-off, wilting and leaf spot disease causal agents. High susceptibility to <i>Rhizoctonia solani</i> was detected in all accessions while variability in rocket seedling susceptibility for <i>Sclerotinia</i> assays was observed. Susceptibility to wilting caused by the fungus <i>Fusarium oxysporum</i> f. sp. <i>raphani</i> was tested. <i>E. sativa</i> varieties exhibited a lower severity degree associated to yellowing-related symptoms compared to <i>D. tenuifolia</i>. Resistance assay using the bacterium <i>Xanthomonas campestris</i> pv. <i>campestris</i> was also performed. Five <i>E. sativa</i> varieties showed a disease incidence lower than 60% while all the <i>D. tenuifolia</i> accessions, showed a susceptibility of 100%. The present study represents a step towards the identification of genetic resources useful in breeding for the selections of novel resistant varieties.
DOI: 10.6084/m9.figshare.4591690
title: Karantanis, PhD Project Dataset

description: This is a dataset on gait metrics of small mammals
DOI: 10.6084/m9.figshare.4591690.v1
title: Karantanis, PhD Project Dataset

description: This is a dataset on gait metrics of small mammals
DOI: 10.6084/m9.figshare.4591615
title: Supplementary Material for: ANCA Associated Vasculitis Secondary to Levamisole-Adultered Cocaine with Associated Membranous Nephropathy: A Case Series

description: <b><i>Background:</i></b> Cocaine is a risk factor for acute kidney injury and chronic kidney disease with progression to end-stage renal disease. Levamisole is an adulterant that is added to cocaine to enhance its euphoric effects. Levamisole-adulterated cocaine (LAC) is associated with the distinct clinical syndromes of agranulocytosis, leukocytoclastic vasculitis, cocaine-induced midline destructive lesions (CIMDL), and ANCA-associated vasculitis (AAV) with pauci-immune necrotizing glomerulonephritis. <b><i>Methods:</i></b> We reviewed all cases of AAV secondary to LAC at our institution. <b><i>Results:</i></b> We report 3 cases of AAV secondary to LAC and associated membranous nephropathy (MN). The first and second cases are concurrent AAV secondary to LAC and associated MN while the third case involves the development of MN after AAV secondary to LAC. <b><i>Conclusions:</i></b> Clinicians should be aware of this novel association of LAC with MN.
DOI: 10.6084/m9.figshare.4591615.v1
title: Supplementary Material for: ANCA Associated Vasculitis Secondary to Levamisole-Adultered Cocaine with Associated Membranous Nephropathy: A Case Series

description: <b><i>Background:</i></b> Cocaine is a risk factor for acute kidney injury and chronic kidney disease with progression to end-stage renal disease. Levamisole is an adulterant that is added to cocaine to enhance its euphoric effects. Levamisole-adulterated cocaine (LAC) is associated with the distinct clinical syndromes of agranulocytosis, leukocytoclastic vasculitis, cocaine-induced midline destructive lesions (CIMDL), and ANCA-associated vasculitis (AAV) with pauci-immune necrotizing glomerulonephritis. <b><i>Methods:</i></b> We reviewed all cases of AAV secondary to LAC at our institution. <b><i>Results:</i></b> We report 3 cases of AAV secondary to LAC and associated membranous nephropathy (MN). The first and second cases are concurrent AAV secondary to LAC and associated MN while the third case involves the development of MN after AAV secondary to LAC. <b><i>Conclusions:</i></b> Clinicians should be aware of this novel association of LAC with MN.
DOI: 10.6084/m9.figshare.4591597
title: Data supporting Marshall et al. (2017) in Ecology and Evolution

description: This data supports the following publication: <br>Marshall HH, Vitikainen EIK, Mwanguhya F, Businge R, Kyabulima S, Hares MC, Inzani E, Kalema-Zikusosa G, Mwesige K, Nichols HJ, Sanderson JL and Cant MA (2017). Lifetime fitness consequences of early-life ecological hardship in a wild mammal population. <em>Ecology and Evolution</em><br><em><br></em>See read me.txt file for further information
DOI: 10.6084/m9.figshare.4591585
title: Supplementary Material for: Mechanisms Linking Interparental Aggression to Child Dental Caries

description: Research has garnered support for a systemic view of factors affecting child dental caries that accounts for the influence of social factors such as the family environment. Our previous work has demonstrated the association between mother-to-father emotional aggression and child caries. The present study builds on these results by evaluating pathways that might explain this relation. Families (<i>n</i> = 135) completed a multimethod assessment of mother-to-father emotional aggression, child caries, and several hypothesized mediators (i.e., child cariogenic snack and drink intake, child internalizing behaviors, child salivary cortisol and α-amylase reactivity, parental laxness, child oral hygiene maintenance, and parental socialization of child oral hygiene maintenance). Mediation analyses partially supported the role of the child's diet as a mechanism linking mother-to-father emotional aggression and child caries. However, children's neglect of oral hygiene, parental laxness, and child emotional and biological disturbances failed to stand as conduits for this association. Future investigations should expand upon these results to better establish the causal links that could only be suggested by the present cross-sectional findings.
DOI: 10.6084/m9.figshare.4591597.v1
title: Data supporting Marshall et al. (2017) in Ecology and Evolution

description: This data supports the following publication: <br>Marshall HH, Vitikainen EIK, Mwanguhya F, Businge R, Kyabulima S, Hares MC, Inzani E, Kalema-Zikusosa G, Mwesige K, Nichols HJ, Sanderson JL and Cant MA (2017). Lifetime fitness consequences of early-life ecological hardship in a wild mammal population. <em>Ecology and Evolution</em><br><em><br></em>See read me.txt file for further information
DOI: 10.6084/m9.figshare.4591585.v1
title: Supplementary Material for: Mechanisms Linking Interparental Aggression to Child Dental Caries

description: Research has garnered support for a systemic view of factors affecting child dental caries that accounts for the influence of social factors such as the family environment. Our previous work has demonstrated the association between mother-to-father emotional aggression and child caries. The present study builds on these results by evaluating pathways that might explain this relation. Families (<i>n</i> = 135) completed a multimethod assessment of mother-to-father emotional aggression, child caries, and several hypothesized mediators (i.e., child cariogenic snack and drink intake, child internalizing behaviors, child salivary cortisol and α-amylase reactivity, parental laxness, child oral hygiene maintenance, and parental socialization of child oral hygiene maintenance). Mediation analyses partially supported the role of the child's diet as a mechanism linking mother-to-father emotional aggression and child caries. However, children's neglect of oral hygiene, parental laxness, and child emotional and biological disturbances failed to stand as conduits for this association. Future investigations should expand upon these results to better establish the causal links that could only be suggested by the present cross-sectional findings.
DOI: 10.6084/m9.figshare.4591564
title: SO_2463_Batch2

description: Leaf tissue samples of Small cardamom (Elettaria Cardamomum) Control and Capsule Rot
DOI: 10.6084/m9.figshare.4591555
title: DataSet_TalkingRx

description: Clinical Trial Data Set
DOI: 10.6084/m9.figshare.4591009
title: Tagged Flickr metadata

description: Anonymised datafile, extracted from YFCC100M archive, contains tags and keywords corresponding to risk-signalling and neutral environmental semantics
DOI: 10.6084/m9.figshare.4590808
title: OLAAP_munka (1).sav

description: This is the data base for the development of the Work Addiction Risk Test Revised.
DOI: 10.6084/m9.figshare.4590766
title: Data file for Pd leaching (EnCat system)

description: Excel file containing S1/S2 data for Pd leaching. Data used in modelling.<br><br>
DOI: 10.6084/m9.figshare.4590766.v1
title: Data file for Pd leaching (EnCat system)

description: Excel file containing S1/S2 data for Pd leaching. Data used in modelling.<br><br>
DOI: 10.6084/m9.figshare.4590721
title: Python notebooks summarizing the data analysis path towards the figures in the paper

description: This directory includes two python notebooks that detail the analysis of burst data (usALEX smFRET) used in the figures (using FRETbursts software).
DOI: 10.6084/m9.figshare.4590721.v2
title: Python notebooks summarizing the data analysis path towards the figures in the paper

description: This directory includes two python notebooks that detail the analysis of burst data (usALEX smFRET) used in the figures (using FRETbursts software).
DOI: 10.6084/m9.figshare.4590721.v1
title: Python notebooks summarizing the data analysis path towards the figures in the paper

description: This directory includes two python notebooks that detail the analysis of burst data (usALEX smFRET) used in the figures (using FRETbursts software).
DOI: 10.6084/m9.figshare.4589560
title: (-8)TA-(-5)NTD doubly labeled lacCONS promoter at different transcription initiation stages

description: This data set is a collection of usALEX smFRET burst data measured for the lacCONS promoter DNA labeled at the transcription bubble region (in initiation). Each measurement follows the results in different steady-state initiation states.
DOI: 10.6084/m9.figshare.4590250
title: 150 Analog Max Weaver Dye Library Subset

description: This is a subset of 150 chemical dyes that are housed in the Max Weaver Dye Library at North Carolina State University
DOI: 10.6084/m9.figshare.4589560.v2
title: (-8)TA-(-5)NTD doubly labeled lacCONS promoter at different transcription initiation stages

description: This data set is a collection of usALEX smFRET burst data measured for the lacCONS promoter DNA labeled at the transcription bubble region (in initiation). Each measurement follows the results in different steady-state initiation states.
DOI: 10.6084/m9.figshare.4588741
title: Promoter bubble opening and escape activities for different FRET lacCONS constructs

description: These are usALEX smFRET burst data for measurements of lacCONS promoter DNA doubly labeled at different positions to probe bubble opening. Each construct is measured three times:<br>1. Free DNA2. RNAP-promoter open bubble (RPo) complex3. RPo complex after addition of all NTPs - promoter escape and run-off