cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15784/601581
title: Particle-size distributions of Eocene-Oligocene sediment from ODP Site 696, South Orkney Microcontinent

description: This dataset contains measurements of terrigenous particle-size distributions on Eocene-Oligocene sediment from Ocean Drilling Program Site 696 drilled in 650 m water depth on the South Orkney Microcontinent. Carbonate and organic matter were removed through addition of 10mL aliquots of 30% H2O2, 2mL aliquots of 10% HCl to ~50-100mL suspension on a hot plate. Diatoms were generally either absent or present in trace amounts in the Eocene-Oligocene interval and were not removed. Dispersion was through heating with sodium pyrophosphate. Samples were measured on a Malvern Mastersizer 2000 with a Hydro 2000MU (A) accessory, using a Refractive Index of 1.6 (Illite) and an absorption coefficient of 0.9. Results are in (vol. %) per size class, with diameter range equivalent to the diameter of spheres with the same volume as measured particles.
DOI: 10.15784/601582
title: Major and trace element analyses of Eocene-Oligocene marine sediments from ODP Site 696, South Orkney Microcontinent

description: This dataset contains measurements of major and trace elements on 190 samples of Eocene-Oligocene sediment from Ocean Drilling Program Site 696 drilled in 650 m water depth on the South Orkney Microcontinent. The composition of detrital, biogenic and authigenic sediment components was assessed via whole rock geochemistry of sediment samples. Instrument analysis was completed at Montclair State University.
DOI: 10.17632/xp52nbs8r3.1
title: Underlying data for 'Serum Leucine-Rich Alpha-2 Glycoprotein Levels in Rheumatoid Arthritis and Spondyloarthritis: A Promising Biomarker'

description: This is a database of a cross-sectional data collected to evaluate serum leucine-rich alpha-2 glycoprotein levels in rheumatoid arthritis and spondyloarthritis. The subjects were recruited from the rheumatology polyclinic of Dr. Cipto Mangunkusumo National Central Public Hospital (Jakarta, Indonesia) from March to May of 2022. This study has received approval from the Research Ethics Committee of Faculty of Medicine Universitas Indonesia and Dr. Cipto Mangunkusumo National Central Public Hospital (KET-197/UN2.F1/ETIK/PPM.00.02/2022).
Patients aged over 18 years old with confirmed seropositive active rheumatoid arthritis, ankylosing spondylitis, and peripheral spondyloarthritis who gave their consent were recruited. Patients with other systemic autoimmune diseases, acute infectious diseases, liver disorders, and malignancies are excluded from the study. Patient characteristics, serum LRG (Human LRG ELISA Assay Kit, Immuno-Biological Laboratories Co., Ltd., Fujioka, Gunma, Japan; read with spectrophotometry at 450 nm), and serum CRP (cobas c 311 analyzer, Roche Holding AG, Basel, Switzerland) were recorded in this database.
DOI: 10.5066/p901gnix
title: Phreatophytic Shrublands and Grasslands, Historical (1990-2019) Trends in Groundwater Levels, Precipitation, and Air Temperature, Historical (1955-2016) Trends in Snow-Water Equivalent, and Projected Future (2040-99) Climate and Hydrology Anomalies across Oregon

description: This data release presents baseline datasets of phreatophytic groundwater-dependent ecosystem (GDE) locations in Oregon and trends in physical and environmental factors potentially influencing proximal groundwater supplies. The data release consists of three child items. The child items are: (1) Select Phreatophytic Shrub and Grass Species of Oregon, the Estimated Distribution of Phreatophytic Shrubland and Grassland Across Oregon, and Field Observations used to Constrain Mapped Species Distributions (tabular and raster datasets), (2) Historical Trends in Shallow and Deep Groundwater Levels by Well and 8-Digit Hydrologic Units (HUC8) (1990-2019, 2005-2019, and 2015-2019), GridMET Precipitation and Air Temperature by HUC8 (1990-2019), and Snow-Water Equivalent by Station and HUC8 (1955-2016); Statewide Summaries, Time-Series Graphs, and Groundwater-Well Proximity to Streams and Cultivated Crops, Oregon (tabular datasets and pdfs), and (3) Projected Future Climate Anomalies for Precipitation, Air Temperature, Snow-Water Equivalent, Runoff, Soil Moisture, and Evapotranspiration During 2040-2069 and 2070-2099 Relative to the Historical 1971-2000 Mean from Climate Toolbox (Intermediate- and High-Emissions Scenarios, RCP 4.5 and 8.5, Respectively).
DOI: 10.5066/p9lnql6l
title: Data release associated with the journal article "Solar and sensor geometry, not vegetation response, drive satellite NDVI phenology in widespread ecosystems of the western United States"

description: This dataset supports the following publication: "Solar and sensor geometry, not vegetation response, drive satellite NDVI phenology in widespread ecosystems of the western United States" (DOI:10.1016/j.rse.2020.112013). The data release allows users to replicate, test, or further explore results. The dataset consists of 4 separate items based on the analysis approach used in the original publication 1) the 'Phenocam' dataset uses images from a phenocam in a pinyon juniper ecosystem in Grand Canyon National Park to determine phenological patterns of multiple plant species. The 'Phenocam' dataset consists of scripts and tabular data developed while performing analyses and includes the final NDVI values for all areas of interest (AOIs) described in the associated publication. 2) the 'SolarSensorAnalysis' dataset uses downloaded tabular MODIS data to explore relationships between NDVI and multiple solar and sensor angles. The 'SolarSensorAnalysis' dataset consists of download and analysis scripts in Google Earth Engine and R. The source MODIS data used in the analysis are too large to include but are provided through MODIS providers and can be accessed through Google Earth Engine using the included script. A csv file includes solar and sensor angle information for the MODIS pixel closest to the phenocam as well as for a sample of 100 randomly selected MODIS pixels within the GRCA-PJ ecosystem. 3) the 'WinterPeakExtent' dataset includes final geotiffs showing the temporal frequency extent and associated vegetation physiognomic types experiencing winter NDVI peaks in the western US. 4) the "SensorComparison" dataset contains the NDVI time series at the phenocam location from 4 other satellites as well as the code used to download these data.
DOI: 10.5281/zenodo.7150123
title: Experimental corridor effects on ant seed dispersal

description: Habitat fragmentation impacts ecosystems worldwide through habitat loss, reduced connectivity, and edge effects. Yet, these landscape factors are often confounded, leaving much to be investigated about their relative effects, especially on species interactions. In a landscape experiment, we investigated the consequences of connectivity and edge effects for seed dispersal by ants. We found that ants dispersed seeds farther in habitat patches connected by corridors, but only in patch centers. We did not see an effect on the total number of seeds moved or the rate ants detected seeds. Furthermore, we did not see any differences in ant community composition across patch types, suggesting that shifts in ant behavior or other factors increased ant seed dispersal in patches connected by corridors. Long distance seed dispersal by ants that requires an accumulation of short distance dispersal events over generations may be an underappreciated mechanism through which corridors increase plant diversity. The following data were made publicly available to go along with our paper in <em>Ecosphere</em> (Burt et al. 2022). Please read metadata file for additional information.
DOI: 10.5281/zenodo.7306089
title: Source data for "Fast multi-source nanophotonic simulations using augmented partial factorization"

description: Source data for Fig. 3b-c and Fig. 5a-b
DOI: 10.6073/pasta/a867db80386c170619cf2b14220fa4ba
title: Arctic LTER Streams Chemistry Toolik Field Station, Alaska 1978 to 2017.

description: Since 1983, the Streams Project at the Toolik Field Station has monitored physical, chemical, and biological parameters in a 5-km, fourth-order reach of the Kuparuk River near its intersection with the Dalton Highway and the Trans-Alaska Pipeline. In 1989, similar studies were begun on a 3.5-km, third-order reach of a second stream, Oksrukuyik Creek. In each river, physical conditions (such as discharge and temperature), nutrient levels, primary production, insects, and fishes are monitored throughout the summer. Also, we conduct experimental fertilization of the Kuparuk River and Oksrukuyik Creek to determine the effects of added phosphorus and nitrogen on primary productivity, insect communities, and fish growth in arctic rivers. The Oksrukuyik Creek has not been fertilized since 1996. The Kuparuk River received phosphorus additions from 1983 through 2016. Station sites are relative distance from the original nutrient drippers for both the Kuparuk and Oksrukuyik. Kuparuk stations include sites in a reference, recovery, and fertilized reach. Reaches were defined based on the location of nutrient addition (see methods).
DOI: 10.17632/3ntkg88d4d.1
title: Brazilian Wheat Dataset

description: The experiments were conducted at the Agriculture Experimental located south of Brazil, from May to October in 2018. The study area contains several 2.5m x 1m rectangular parcels, referred to as plots, which hold two Brazilians wheat varieties. The genotypes used were TBIO Toruk and BRS Parrudo (48 Toruk plots and 40 Parrudo plots). Variability in the growth of the crops was created for all test areas, where each one received a varying quantity of nitrogen. Different Nitrogen (N) rates were chosen to generate crop growth variability, to evaluate the response of biomass and grain yield to N availability, which we called spatial variability. The database consists of images captured by Unmanned Aerial Vehicles (UAV) and biomass manual measurements. Two different processes were used to create this dataset. In the first, we collected the biomass to make a ground-truth. This step is done manually and destructively. Shoot dry biomass was determined at three growth stages: the stage of six fully expanded leaves, referred herein as V6, three nodes, and at flowering by the collecting of plants in an area of 0.27 m² for each plot. This was done to create a temporal variability. The plants collected were oven-dried at 65ºC until constant weight and weighed. Then the value is extrapolated for kilograms/hectare (Kg/ha). That is the BIOMASS value in “RGB DATA.CSV”. The second process was to acquire the images at the height of 50m above ground using a camera coupled to a DJI Matrice 100 Quadcopter. The camera is a single channel DJI X3 Visible (RGB), with 12MB resolution and 8-bit pixel depth. For agriculture acquisition, the recommended frontal overlap should be at least 80%, and the side overlap should be at least 70%. The resulting pixel size for the RGB images is 2.14cm²/px. It was a total of 30 individual images captured by the UAV using these parameters. Post-processing of the acquired images includes georeferencing and orthomosaic generation. The result can be seen in the “Orthomosaic RGB” folder, where we have eight photos from different days. At the “Orthomosaic RGB” folder, we selected from the orthomosaic regions of interest (ROI) were manually delineated from each plot, as shown by the red dots in “example_ROI.png”. The ROIs were selected in a way that excluded pixels with soil exposed. And then, from each ROI, an average of pixels and count was performed in the 3 RGB channels. This could be seen for all images in “RGB_Data_Orthomosaic.CSV”. With different days with biomass measured, at the folder “Cut Plots RGB”, we have the output for the algorithm developed who use a manually created mask to perform the segmentation of the areas of interest, i.e., the plots. There is already the identifier (id) of each plot in this mask, so there is a difference between the mask’s colors, which can be seen in figure “cut_mask.tif”. After segmentation of 88 plots for each Biomass manual cut-off day, we obtained 264 RGB images with 158x110 pixels.
DOI: 10.23645/epacomptox.6062623.v4
title: ToxCast Database (invitroDB)

description: ToxCast high-throughput assay information including assay annotation user guide, assay target information, study design information and quality statistics on the assays.
DOI: 10.18739/a2wh2dd7w
title: Hydrographic Data, Upper Kuparuk River Watershed, Alaska, 1993-2017
DOI: 10.5281/zenodo.7080016
title: European forest disturbance map

description: <strong>Description</strong> This repository holds maps of annual forest disturbances across 35 European countries derived from Landsat satellite data. The disturbance maps currently cover the time period 1986-2020 and are accompanied by a map of disturbance severity (for the moment only until 2016) and a forest mask. The methodological details are explained in Senf and Seidl 2021 (see reference blow). The maps are available per country as geoTIFF. The spatial reference system is EPSG 3035 (ETRS89 / LAEA Europe). The most current version is 1.1.2. The maps will be updated regularly. The maps can also be explored online. <strong>Citation</strong> Please cite the dataset including version number and following paper when using the maps: Senf, C. and Seidl, R. (2021) Mapping the forest disturbance regimes of Europe. <em>Nature Sustainability.</em> https://www.nature.com/articles/s41893-020-00609-y <strong>Version history</strong> 1.0.0 - Initial version, covering 2016-1986 and including a forest mask and an estimate of disturbance severity. 1.1.0 - Map update until 2020 using same methods as in version 1.0.0. Not accompanied by disturbance severity. 1.1.1 - Added disturbance maps for Andorra, Liechtenstein and Luxembourg. 1.1.2 - Added disturbance severity to version. 1.1.3 - Improved file structure for easier download. 1.1.4 - Fixed wrong/missing forest masks. <strong>Known issues</strong> Some SLC-off artefacts visible in northern Serbia (both version 1.0.0 and 1.1.0). Known false disturbances mapped in Norway in 2020 in version 1.1.0. Missing disturbances from 1986 in Andorra and Liechtenstein. (version 1.1.1).
DOI: 10.17632/c8r645tj9v.2
title: Data for "Improvements to the fracture pipe network model for complex 3D discrete fracture networks"

description: This dataset contains all of the parameters of the Discrete Fracture Networks (DFNs) , for example, the coordinates, the aperture of the DFNs. The format of the files is: first line: number of fractures the following lines: fracture index, fracture coordinates (xA, yA, zA, xB, yB, zB, xC, yC, zC), fracture aperture (unit: microns) All fractures are square shape, so their coordinates of point D can be calculated easily, eg, xD=xA+xC-xB. When using the data, cite it as follows: Wang, Chenhui (2020), “Data for "Improvements to the fracture pipe network model for complex 3D discrete fracture networks"”, Mendeley Data, V1, doi: 10.17632/c8r645tj9v.1 Please also cite the reference article that this dataset belongs to.
DOI: 10.6073/pasta/a5ecfbaf9a6485ba9276a66ce7514601
title: Moss point transect data for the Kuparuk River near Toolik Field Station, Alaska 1993-current.

description: This file contains the consolidated data for percent cover of dominant bryophytes and other easilty idenfiable macro-algae in the experimental reaches of the Kuparuk River beginning in 1993 and updated annually. In some years percent cover was recorded more than one time per seaon. In all years percent cover was recorded in riffle habitats and in some (early) years percent cover was recorded for pool habitats. Moss point transects have been done on the Kuparuk since 1993.
DOI: 10.6078/m73j3b1j
title: Avkat Archaeological Project
DOI: 10.6084/m9.figshare.21471264.v1
title: Mater Data Hepatitis

description: Data consists of polymorphisms towards HBV DNA
DOI: 10.5281/zenodo.7164118
title: On the correspondence between the transcriptomic response of a compound and its effects on its targets

description: Dataset used in the manuscript "On the correspondence between the transcriptomic response of a compound and its effects on its targets". More info at https://github.com/enveda/transcriptomic-target-correlation
DOI: 10.5281/zenodo.7164117
title: On the correspondence between the transcriptomic response of a compound and its effects on its targets

description: Dataset used in the manuscript "On the correspondence between the transcriptomic response of a compound and its effects on its targets". More info at https://github.com/enveda/transcriptomic-target-correlation
DOI: 10.5281/zenodo.7445855
title: On the correspondence between the transcriptomic response of a compound and its effects on its targets

description: Dataset used in the manuscript "On the correspondence between the transcriptomic response of a compound and its effects on its targets". More info at https://github.com/enveda/transcriptomic-target-correlation
DOI: 10.6084/m9.figshare.21739331
title: DNA signaturing database for Scenedesmus-like microalgae

description: This file is a DNA signaturing database for Scenedesmus-like microalgae species identification.
DOI: 10.17632/mrwhkxynpb.1
title: (R)-2-hydroxyglutarate inhibits KDM5 histone lysine demethylases to drive tumorigenesis in IDH-mutant cancers. Gunn et al.

description: Western blots and microscopy
DOI: 10.15468/dl.kynh7g
title: Occurrence Download

description: A dataset containing 262 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podochilus lucescens Blume"
 ]
}

 The dataset includes 262 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079700-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zgbdbk
title: Occurrence Download

description: A dataset containing 51587 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potentilla norvegica L."
 ]
}

 The dataset includes 51587 records from 520 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079680-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.npbydf
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina pungentisepala (W.T.Wang) Mich.Möller & A.Weber"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079702-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xzkrf3
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polyrhabda atriplicifolia C.C.Towns."
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079701-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujndrh
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polystachya canaliculata Summerh."
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079703-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8s43v
title: Occurrence Download

description: A dataset containing 1913 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Registros Primates Neotropicales Convocatoria APC"
 ]
}

 The dataset includes 1913 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079704-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.678rbh
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podochilus malabaricus Wight"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079705-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rm38bc
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina purpurea F.Wen, Bo Zhao & Y.G.Wei"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079706-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rhx53k
title: Occurrence Download

description: A dataset containing 521 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polyscias aculeata (Decne. & Planch.) Harms"
 ]
}

 The dataset includes 521 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079707-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d8awr4
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polystachya candida Kraenzl."
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079708-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.485emu
title: Occurrence Download

description: A dataset listing the 17907 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "StateProvince is one of (cauca)"
 ]
}

 The dataset's 17907 records were derived from 506 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079681-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z3a2jm
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neotamias durangae (J.A.Allen, 1903)"
 ]
}

 The dataset includes 88 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079709-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.muwp3e
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podochilus marsupialis Schuit."
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079710-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.