cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.4df50/6
title: concatenated 4SALE align Bayesian CIPRES final run

description: Nexus file for Bayesian estimation of the Aglaothorax shield-back katydid phylogeny from a concatenated dataset of six genes.
DOI: 10.5061/dryad.4df50/7
title: ITS2 4SALE align w gap coding Bayesian CIPRES final run

description: Nexus file for Bayesian estimation of ITS2 gene tree for Aglaothorax shield-back katydids. Alignment was aided by secondary structure estimation in 4SALE. Analysis includes gap coding.
DOI: 10.5061/dryad.4s405/1
title: R code for fixed landscape partitioning

description: This is the code used to generate Figures 1, S1, S2, S3 and S4 as presented in the paper and supplementary materials.
DOI: 10.5061/dryad.4s405/2
title: R code for average Bt usage

description: This is the R code used to generate Figure 2 as presented in the paper.
DOI: 10.5061/dryad.4s405/3
title: R code for uniform density dependence

description: This is the R code used to generate Figures 3,4 and S5 as presented in the paper and supplementary materials.
DOI: 10.5061/dryad.4s405/4
title: R code for heterogeneous density dependence

description: This is the R code used to generate Figures 5, S6 and S7 as presented in the paper and supplementary materials.
DOI: 10.5061/dryad.540q6/1
title: SEM image of fossil melanosomes
DOI: 10.5061/dryad.5j40q/1
title: data_Schull et al. 2016_Behav Ecol

description: Longitudinal monitoring of king penguins' colour parameters of beak ornaments during moult, fasting period of courtship and breeding and after experimentally removing parasites.
DOI: 10.5061/dryad.5k4m2/1
title: Three methods for estimating selection through male fitness

description: Folder contains R scripts and data for method 1 (mating opportunities based on flower schedules) and method 3 (experimental evolution method). R scripts and data for method 2 (genetic paternity analysis) available at Dryad doi:10.5061/dryad.5g5rp/1
DOI: 10.5061/dryad.ct511/1
title: Fur_seal_dive_capture_data

description: This file is an excel data files regrouping the complete dive data set used in this paper. each column are clearly labbelled Campain: field season;  fur seal pup ID use to identify the female; female size in cm; female mass in kg; night index, form 0 (first night spent at sea, to a maximal value corresponding to the last night recorded); Dive_ID: an incremental dive number for a given female form the first dive to the last dive available for that female.   Start_time_dt : date and time at the beginning of the dive,Max_Depth:_m : maximun diving depth for the corresponding dive, surf_before: time spent at surface prior to the dive; desc_time_s : duration in second of the descent phase of the dive, Bottom_time_s: duration in seconds of the bottom phase of the dive; asc_time_s: duraction in seconds of the ascent phase of the dive; depth_end_desc_m:  depth in meter at the end of the decent phase of the dive; depth_start_asc_m: depth in meters at the begining of the ascent phase of the dive; desc_speed_ms-1: descent speed during the descent phase of the dive in meter per seconds; Asc_speed_ms-1: ascent speed during the ascent phase of the dive in meter per seconds; Prey_Capture _Attempts : total number of prey capture attempts during the complete dive; capture_mean_depth_m : mean depth of the capture attempts for the dive; nb_captures_desc : number of prey capture attempts during the descent phase of the dive; nb_captures_bottom : number of prey capture attempts during the bottom phase of the dive;  nb_captures_asc: number of prey capture attempts during the ascent phase of the dive
DOI: 10.5061/dryad.d8d01/1
title: Number of eggs laid by native and introduced Drosophila subobscura females during test phases after a learning task

description: Header consists in : Date (day of start of the experiment), Type ("I" = Introduced, "N" = Native population),	Pop (Population of origin),	Cond ("B/FQ" : learning phase to avoid strawberry, "BQ/F" : learning phase to avoid banana), Test (Number of test phase), milieu.B (number of eggs laid in banana medium), milieu.F (number of eggs laid in strawberry medium), tot (total number of eggs laid),	propB (proportion of eggs laid in the banana medium), propG (proportion of eggs laid in the correct medium), Lat (Latitdue of the populaiton of origin).
DOI: 10.5061/dryad.db78g.2/10.2
title: All_150_noEGT

description: Alignment file; 150 genes minus egt genes; eukaryotes, bacteria and archaea
DOI: 10.5061/dryad.db78g.2/11.2
title: Euk_150_noEGT

description: Alignment file; 150 genes minus egt genes; eukaryotes.
DOI: 10.5061/dryad.db78g.2/12.2
title: 1554_Single_gene_alignments_All

description: All 1554 single gene alignments with all taxa.  Data were concatenated and columns with &gt; 50% missing data in eukaryotic taxa were removed to make the large matrices analyzed in this study.
DOI: 10.5061/dryad.db78g.2/13.2
title: 1554_Single_gene_alignments_Euk_only

description: All 1554 single gene alignments with only eukaryotic taxa.  Data were concatenated and columns with &gt; 50% missing data were removed to make the large matrices analyzed in this study.
DOI: 10.5061/dryad.db78g.2/8.2
title: All_1554_noEGT

description: Alignment file; 1554 genes minus egt genes; eukaryotes, bacteria and archaea
DOI: 10.5061/dryad.db78g.2/9.2
title: Euk_1554_noEGT

description: Alignment file; 1554 genes minus egt genes; eukaryotes
DOI: 10.5061/dryad.dn53j/1
title: Microsatellite data Salix

description: This file contains the microsatellite data of the Salix populations which were sampled at four locations. Please note that each location is on a separate sheet. The genotypes are arranged in GenAlEx format.
DOI: 10.5061/dryad.g8140/1
title: Prevalence of PUUV per trapping session

description: Prevalence of Puumala hantavirus infection in a cyclic, boreal bank vole population during a 7-year capture-mark-recapture study. Prevalence per trapping session. Key to variable names on a separate worksheet.
DOI: 10.5061/dryad.g8140/2
title: Seroconversion rate per trapping session

description: Rate of Puumala hantavirus seroconversion (acquisition of specific antibodies) in a cyclic, boreal bank vole population during a 7-year capture-mark-recapture study. Rates per trapping session. Key to variable names on a separate worksheet.
DOI: 10.5061/dryad.g8140/3
title: PUUV prevalence per year cohort

description: Prevalence of Puumala hantavirus infection in a cyclic, boreal bank vole population during a 7-year capture-mark-recapture study. Prevalences per bank vole year cohort and trapping session. Key to variable names on a separate worksheet.
DOI: 10.5061/dryad.g8140/4
title: Seroconversion rate per year cohort

description: Rate of Puumala hantavirus seroconversion (acquisition of specific antibodies) in a cyclic, boreal bank vole population during a 7-year capture-mark-recapture study. Rates per bank vole year cohort and trapping session. Key to variable names on a separate worksheet.
DOI: 10.5061/dryad.hg8m5/1
title: Figure_4 data

description: Measured laser delay data plotted on figure 4
DOI: 10.5061/dryad.j77h6/1
title: Raw data and scripts for data processing

description: The Data directory contains raw xyz coordinate data and python scripts for processing data for analysis.
DOI: 10.5061/dryad.j77h6/2
title: Analysis

description: R and python scripts for analyzing the processed raw data, includes mixed model ANOVAs and generation of figures.
DOI: 10.5061/dryad.m03vf/10
title: LimTraits copy

description: Species level trait values for Limnanthes species in study.
DOI: 10.5061/dryad.m03vf/11
title: Mim_CooccurMtrx_1m

description: Mimulus co-occurrence matrix for 1 meter scale.
DOI: 10.5061/dryad.m03vf/3
title: Clarkia_CooccurMtrx_1m

description: Clarkia co-occurrence matrix at 1 meter scale.
DOI: 10.5061/dryad.m03vf/4
title: Clarkia_CooccurMtrx_30m

description: Clarkia co-occurrence matrix at 30 meter scale.
DOI: 10.5061/dryad.m03vf/5
title: Clarkia_CooccurMtrx_100m

description: Clarkia co-occurrence matrix at 100 meter scale.
DOI: 10.5061/dryad.m03vf/6
title: ClarkiaTraits

description: Dataframe with species level trait values for Clarkia.
DOI: 10.5061/dryad.m03vf/7
title: Lim_CooccurMtrx_1m

description: Limnanthes co-occurrence matrix for 1 meter scale.
DOI: 10.5061/dryad.m03vf/8
title: Lim_CooccurMtrx_30m

description: Limnanthes co-occurrence matrix for 30 meter scale.
DOI: 10.5061/dryad.m03vf/9
title: Lim_CooccurMtrx_100m

description: Limnanthes co-occurrence matrix for 100 meter scale.
DOI: 10.5061/dryad.n1m8d/1
title: vanGils_Fig2_Arctic_climate

description: This file contains annual data on high-Arctic climate data (also presented in Table S1).
DOI: 10.5061/dryad.n1m8d/2
title: vanGils_Fig2_Polish_biometry

description: This file contains the biometry measured on juvenile red knots caught in Gdańsk Bay.
DOI: 10.5061/dryad.n1m8d/3
title: vanGils_Fig3A_Mauritania_stable_isotopes

description: This file contains the stable isotope data on 676 juvenile and 1664 adult red knots at their wintering site Banc d'Arguin (Mauritania).
DOI: 10.5061/dryad.n1m8d/4
title: vanGils_Fig3B_Mauritania_prey_depth

description: This file contains the prey depth distributions estimated for the three food types in Mauritania.
DOI: 10.5061/dryad.n1m8d/5
title: vanGils_Fig4_resighting_history

description: This file contains the resighting history of 690 juvenile and 1691 adult red knot caught in Mauritania.
DOI: 10.5061/dryad.n1m8d/6
title: breeding grounds

description: polygon of the breeding grounds of red knots at Taymir Peninsula
DOI: 10.5061/dryad.n1m8d/7
title: Data manipulation high-Arctic climate

description: This R script handles the data on high-Arctic climate with respect to temperature, NDVI and snow.
DOI: 10.5061/dryad.qv3s7/1
title: Dataset for Santostefano et al. 2016 Beh Ecol

description: Variables explanation provided in readme file.		Details of analysis provided in main text; code provided in supplementary material. 		Santostefano et al. 2016 ‘Interacting with the enemy: indirect effects of personality on conspecific aggression in crickets’, Behavioral Ecology doi:10.1093/beheco/arw037
DOI: 10.5061/dryad.1hj3m/1
title: Transcriptome contigs

description: Transcriptome contigs obtained through the assembly of merged sequence read data sets from normalised and non-normalised cDNA libraries
DOI: 10.5061/dryad.1hj3m/2
title: Blastx annotation and expression levels

description: Transcriptomic contig Blastx-based annotations and expression levels
DOI: 10.5061/dryad.1hj3m/3
title: Blastp annotation and expression levels

description: Transcriptomic contig Blastp-based annotations and expression levels
DOI: 10.5061/dryad.1hj3m/4
title: Transcriptomic contig expression levels

description: Expression levels of the transcriptomic contigs based on the alignment of the non-normalised cDNA library sequence reads against the assembled transcriptome.
DOI: 10.5061/dryad.1hj3m/5
title: normalizedExpressionLevels

description: Expression levels of the transcriptomic contigs after normalisation of the cDNA library
DOI: 10.5061/dryad.2440v/1
title: Microbial OTUs in L. vulgaris nectar

description: This dataset details the operational taxonimic units (OTUs) found in individual plants or populations of Linaria vulgaris across an urbanization gradient. Moreover, it also contains NMDS coordinates for every population.
DOI: 10.5061/dryad.2fp25/1
title: Zajitschek et al 2016 Proc B Data

description: Description of data is provided in the data file.
DOI: 10.5061/dryad.2hb22.2
title: Data from: Linking landscape-scale differences in forage to ungulate nutritional ecology
DOI: 10.5061/dryad.540q6/2
title: SEM image of fossil melanosomes
DOI: 10.5061/dryad.540q6/3
title: SEM image of fossil melanosomes
DOI: 10.5061/dryad.540q6/4
title: TEM image of fossil melanosomes (stained section)
DOI: 10.5061/dryad.540q6/5
title: TEM image of fossil melanosomes (stained section)
DOI: 10.5061/dryad.540q6/6
title: TEM image of fossil melanosomes (unstained section)
DOI: 10.5061/dryad.540q6/7
title: TEM image of unstained fossil melanosomes (unstained section)
DOI: 10.5061/dryad.5fb98/1
title: HamidRazifard_ITSforDryad_17DEC15

description: nexus file for the DNA sequences used in this study
DOI: 10.5061/dryad.5vv55/1
title: Harrell et al Supplemental Oxygen Isotope Data

description: Supplemental Table 1 – Oxygen isotope (δ18O) results for all fossil samples reported in this study. Mooreville Chalk specimens are plotted in Figure 2. Results are relative to Vienna Standard Mean Ocean Water (V-SMOW).
DOI: 10.5061/dryad.676q3/1
title: Data on experimental plug removal and additional monogamous matings

description: Sheet 1: Data from plug removal experiment (sperm competition); Sheet 2: Plug size data from additional monogamous matings (see ESM); Sheet 3: Variable descriptions for sheets 1 & 2.
DOI: 10.5061/dryad.6gq1g/1
title: Microsatellites Dataset

description: Microsatellite Data set for 23 primers
DOI: 10.5061/dryad.6n66t/1
title: Appendices

description: Appendix 1. Maximum, median, and minimum of environmental factors at each sampling site. Appendix 2. Value of each environmental factor at the centre of each 500 × 500-m grid. Appendix 3. Correlation coefficients and scatter plots among five environmental factors at the sampling sites, and histograms of each environmental factor. Appendix 4. Monthly average temperature during the breeding season at each sampling site. Appendix 5. Details of the N-mixture model. Appendix 6. Results of model averaging for the N-mixture models when we used observation clock time and its squared term as explanatory variables in the detection model. Appendix 7. Results of model selection. Appendix 8. Results of the Generalised Linear Mixed Models (GLMMs) used to test for the effect of spatial autocorrelation among sites.
DOI: 10.5061/dryad.7v11h/1
title: bear_damage_europe-Data

description: Number of compensated claims for brown bear damage in Europe obtained from national and regional wildlife agencies and published literature and reports, as well as from researchers and practitioners. The file also contains environmental and socioeconomic information of each of the study sites.
DOI: 10.5061/dryad.9c250/1
title: Mapping the four-horned locus in sheep

description: Sample identification, sample locations and population cluster membership for all individuals.
DOI: 10.5061/dryad.9c250/2
title: MAP file: 96_ChineseSheep

description: Single nucleotide polymorphism (SNP) raw data files with 54241 loci for 43 Altay sheep, 30 Mongolian sheep and 22 Sishui Fur sheep from China in PLINK-format.
DOI: 10.5061/dryad.9c250/3
title: PED file: 96_ChineseSheep

description: Single nucleotide polymorphism (SNP) raw data files with 54241 loci for 43 Altay sheep, 30 Mongolian sheep and 22 Sishui Fur sheep from China in PLINK-format.
DOI: 10.5061/dryad.b59g7/1
title: PV_quanti_traits_partial_resist

description: Quantitative traits of pathogenicity of Plasmopara viticola (oomycete) from two origins (susceptible and resistant grapevine hosts) when inoculated on different hosts (susceptible and resistant)
DOI: 10.5061/dryad.b658g/1
title: Trzcinski Dryad data all

description: Data collected in field experiment on aquatic communities living within bromeliads in French Guiana.
DOI: 10.5061/dryad.bq70c/1
title: Dataset 1: Main Phylogeny

description: Data used to generate Figure 1.
DOI: 10.5061/dryad.db78g.1
title: Data from: Taxon-rich phylogenomic analyses resolve the eukaryotic tree of life and reveal the power of subsampling by sites
DOI: 10.5061/dryad.dk6gj.2
title: Data from: New resources for genetic studies in Populus nigra: genome wide SNP discovery and development of a 12k Infinium array
DOI: 10.5061/dryad.dk6gj.2/1.2
title: List of SNPs extracted from HT-sequencing data

description: The SNPs are denoted by SNP_IGA followed by the chromosome or scaffold number (V2.0) and the base position within the scaffold.
DOI: 10.5061/dryad.dk6gj.2/2.2
title: P. nigra Genotype data

description: Genotype calling of P. nigra individuals originating from 12 western european river basins and full sib progenies. The individuals are listed in Tables S1
DOI: 10.5061/dryad.j77h6/3
title: README

description: The README file contains descriptions of all files included in the Data and Analysis directories as well as instructions for reproducing analyses.
DOI: 10.5061/dryad.kd835/1
title: JEB_2016_Genetic structure across thermal environments

description: AFLP raw data.
DOI: 10.5061/dryad.m03vf/12
title: Mim_CooccurMtrx_30m

description: Mimulus co-occurrence matrix for 30 meter scale.
DOI: 10.5061/dryad.m03vf/13
title: Mim_CooccurMtrx_100m

description: Mimulus co-occurrence matrix for 100 meter scale.
DOI: 10.5061/dryad.m03vf/14
title: MimTraitsFloral copy

description: Mimulus species floral trait values.
DOI: 10.5061/dryad.m03vf/15
title: MimTraitsVeg copy

description: Mimulus species vegetative trait values.
DOI: 10.5061/dryad.m03vf/16
title: Clarkia consensus tree

description: Clarkia consensus tree
DOI: 10.5061/dryad.m03vf/17
title: Clarkia trees

description: Clarkia Trees
DOI: 10.5061/dryad.m03vf/18
title: Limnanthes consensus tree

description: Limnanthes consensus tree
DOI: 10.5061/dryad.m03vf/19
title: Limnanthes trees

description: Limnanthes trees
DOI: 10.5061/dryad.p3r01/1
title: C++ simulation program

description: Code to simulate partially selfing populations with deleterious mutations arising along a linear genetic map.
DOI: 10.5061/dryad.t748p/1
title: laSV_SV_files

description: Somatic structural variants in BJ cells before and after 6-Thioguanine selection
DOI: 10.5061/dryad.t748p/2
title: CRISPResso analysis

description: HPRT1 structural variant analysis using CRISPResso. Formated accoriding to CRISPResso output. http://dx.doi.org/10.1101/031203
DOI: 10.5061/dryad.t748p/3
title: Analysis_breakpoints_laSV

description: Table containing all sequences from breakpoints called by laSV +/- 50bp from hg19 used to identify PGBD5 signal sequence.
DOI: 10.5061/dryad.t748p/4
title: Metadata_HPRT1

description: Metadata file describing all files uploaded to dryad.
DOI: 10.5061/dryad.t748p/5
title: PWM_PSS_and_RSS

description: Position weight matrix of putative PGBD5 signal sequence (PSS) and recombination signal sequence of RAG1 (RSS).
DOI: 10.5061/dryad.v565c/1
title: L. anceps: autonomous selfing and tube length

description: These data show how autonomous seed production varies with tube length in L. anceps
DOI: 10.5061/dryad.v565c/2
title: Tube and tongue length variation

description: These data show tube length variability of L. anceps flowers and tongue length variability of M. longirostris pollinators
DOI: 10.5061/dryad.v565c/3
title: dryad visit sequences

description: sequence of visitation between short and long tube phenotype flowers in a L. anceps population.  Visits were made by is M. longirostris flies
DOI: 10.5061/dryad.v565c/4
title: dryad cross compatibility

description: seed set after crosses within and between short and long tubed phenotypes of L. anceps
DOI: 10.5061/dryad.v565c/5
title: tube variation and natural seed set

description: Data show how natural seed production varies with tube length of L.anceps
DOI: 10.5061/dryad.v565c/6
title: nectar variation with tube length

description: Data shows now nectar concentration and volume varies with floral tube length of L. anceps
DOI: 10.5061/dryad.024t1/1
title: GrowthRateDryad

description: Growth rate of 140 Phytophthora infestans collected from seven populations over China under five experimental temperatures
DOI: 10.5061/dryad.024t1/2
title: TemDryad

description: Monthly mean temperature in the location where the Phytophthora infestans populations were collected
DOI: 10.5061/dryad.1hj3m/10
title: Transcriptome coding sequences

description: Coding sequences derived from the transcriptome contigs using TransDecoder software
DOI: 10.5061/dryad.1hj3m/11
title: Translated transcriptome coding sequences

description: Amino acid sequences obtained through translation of the transcriptome coding sequences
DOI: 10.5061/dryad.1hj3m/6
title: Blastx-based annotation (green plants) and expression levels

description: Transcriptomic contig Blastx-based annotations using green-plant Swiss-prot accessions and expression levels
DOI: 10.5061/dryad.1hj3m/7
title: Blastp annotation (green plants) and expression levels

description: Transcriptomic contig Blastp-based annotations using green-plant Swiss-prot accessions and expression levels
DOI: 10.5061/dryad.1hj3m/8
title: Transcriptomic contig expression levels (no isoforms)

description: Expression levels of the transcriptomic contigs (no isoforms) based on the alignment of the non-normalised cDNA library sequence reads against the assembled transcriptome.
DOI: 10.5061/dryad.1hj3m/9
title: Transcriptomic contig normalized expression levels (no isoforms)

description: Expression levels of the transcriptomic contigs (no isoforms) after normalisation of the cDNA library.
DOI: 10.5061/dryad.1j41m/1
title: CASENT0709598 (dicom files)

description: Original X-ray micro-CT scan data for Pheidole barumtaun major worker (CASENT0709598)
DOI: 10.5061/dryad.271k9/1
title: Experiment 1 - body size

description: Body size of the fish in experiment 1 as described in the manuscript, in mm.
DOI: 10.5061/dryad.271k9/2
title: Experiment 1 - male-female interactions

description: Counts of interactions directed from both dominant and subordinate male towards the female in experiment 1
DOI: 10.5061/dryad.2hb22.1
title: Data from: Linking landscape-scale differences in forage to ungulate nutritional ecology
DOI: 10.5061/dryad.2hb22.2/1.2
title: elk_data

description: This file contains the fall elk body fat (IFBF) and pregnancy data used in analyses. For fall measurements, lactation status is included; in late-winter/spring measurements lactation status could not be determined. Age was estimated from tooth eruption and wear patterns.  Pregnancy was estimated from PSPB levels in the blood.  IFBF was estimated following the revised methods of Cook et al. (2010) that included an allometrically scaled MAXFAT index.
DOI: 10.5061/dryad.2hb22.2/2.2
title: Elk diet data

description: This file contains the elk diet data collected in the East Fork and West Fork areas. Fecal plant fragment analyses were conducted at the Wildlife Habitat Nutrition Laboratory (Pullman, WA, USA) at level B (&gt;5% prevalence in diet) species composition to estimate East Fork and West Fork seasonal diets.  Each row represents a composite pellet sample
DOI: 10.5061/dryad.2hb22.2/3.2
title: GDM_dataset_summer

description: This file contains the forb, graminoid, and shrub grams of digestible energy (GDM) and all covariates for each sampling plot used in the summer analysis of nutritional resources.
DOI: 10.5061/dryad.2hb22.2/4.2
title: GDM_dataset_winter

description: This file contains the forb, graminoid, and shrub grams of digestible energy (GDM) and all covariates for each sampling plot used in the winter analysis of nutritional resources.
DOI: 10.5061/dryad.3393k/1
title: Total CDS predicted in Zaprionus indianus genome of Indian origin

description: Total CDS predicted in Zaprionus indianus genome of Indian origin using Augustus software.
DOI: 10.5061/dryad.3393k/2
title: Pathway analysis of Indian Zaprionus indianus

description: The mapping of the CDS of Indian Zaprionus indianus was done with the biological pathway using Blast2GO  PRO-KEGG annotation server.
DOI: 10.5061/dryad.373f5/1
title: Illness Perception in End Stage Renal disease- EXCEL file
DOI: 10.5061/dryad.540q6/8
title: SEM image of fossil melanosomes
DOI: 10.5061/dryad.76rc3/1
title: Sex-specific inbreeding on offspring number

description: Data is provided for male and female offspring production for different levels of inbreeding for nine different independently derived lineages. Columns give the sex of the focal individual (mated with an outbred control), the family/lineage ID, the level of inbreeding (F), the total number of offspring produced over an individuals lifespan, and the log transformation of offspring number.