cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17073216.v1
title: Additional file 10 of Molecular evolution of chloroplast genomes in subfamily Zingiberoideae (Zingiberaceae)

description: Additional file 10: Table S10. Nucleotide diversity (Pi) analysis of five Globba species, four Hedychium species, three Kaempferia species and five Zingiber species chloroplast genomes in subfamily Zingiberoideae computed by DnaSP V.6 [69]. a Pi values of 160 protein coding regions. The rps12 was classified as three parts as the second gene divided into three independent transcription units. b Pi values of 161 intron and intergenic regions.
DOI: 10.25549/one-ouc17556656
title: Mattachine Society, Long Beach chapter #113, treasurer's reports (1953-1954)
DOI: 10.6084/m9.figshare.11830494.v2
title: miR-208b modulating skeletal muscle development and energy homoeostasis through targeting distinct targets

description: Embryonic and neonatal skeletal muscles grow via the proliferation and fusion of myogenic cells, whereas adult skeletal muscle adapts largely by remodelling pre-existing myofibers and optimizing metabolic balance. It has been reported that miRNAs played key roles during skeletal muscle development through targeting different genes at post-transcriptional level. In this study, we show that a single miRNA (miR-208b) can modulate both the myogenesis and homoeostasis of skeletal muscle by distinct targets. As results, miR-208b accelerates the proliferation and inhibits the differentiation of myogenic cells by targeting the E-protein family member transcription factor 12 (TCF12). Also, miR-208b can stimulate fast-to-slow fibre conversion and oxidative metabolism programme through targeting folliculin interacting protein 1 (FNIP1) but not TCF12 gene. Further, miR-208b could active the AMPK/PGC-1a signalling and mitochondrial biogenesis through targeting FNIP1. Thus, miR-208b could mediate skeletal muscle development and homoeostasis through specifically targeting of TCF12 and FNIP1.
DOI: 10.6084/m9.figshare.17073219
title: Additional file 11 of Molecular evolution of chloroplast genomes in subfamily Zingiberoideae (Zingiberaceae)

description: Additional file 11: Table S11. The rates of Ka, Ks and Ka/Ks of 79 protein coding genes in 17 Zingiberoideae species by comparing pairwise computed by KaKs_Calculator with default parameters [70]. a Total comparison rates of Ka, Ks and Ka/Ks in 17 Zingiberoideae species. When the Ks values were notably low or the two aligned sequences exhibited 100% perfect, the values of Ka/Ks were replaced by NA. b Total comparison rates of Ka, Ks and Ka/Ks in 17 Zingiberoideae species with Ka/Ks &gt; 1.00 and p values &lt; 0.05.
DOI: 10.6084/m9.figshare.17073284.v1
title: Additional file 2 of Systematic analysis of CCCH zinc finger family in Brassica napus showed that BnRR-TZFs are involved in stress resistance

description: Additional file 2. (XLS 4288 kb)
DOI: 10.25549/one-ouc17556658
title: Mattachine Society, public relations chapter #102 meeting minutes (1953-1954)
DOI: 10.6084/m9.figshare.22316300
title: DNA hypomethylation mediates immune response in pan-cancer

description: Abnormal DNA methylation is a fundamental characterization of epigenetics in cancer. Here we demonstrate that aberrant DNA methylating can modulate the tumour immune microenvironment in 16 cancer types. Differential DNA methylation in promoter region can regulate the transcriptomic pattern of immune-related genes and DNA hypomethylation mainly participated in the processes of immunity, carcinogenesis and immune infiltration. Moreover, many cancer types shared immune-related functions, like activation of innate immune response, interferon gamma response and NOD-like receptor signalling pathway. DNA methylation can further help identify molecular subtypes of kidney renal clear cell carcinoma. These subtypes are characterized by DNA methylation pattern, major histocompatibility complex, cytolytic activity and cytotoxic t lymphocyte and tumour mutation burden, and subtype with hypomethylation pattern shows unstable immune status. Then, we investigate the DNA methylation pattern of exhaustion-related marker genes and further demonstrate the role of hypomethylation in tumour immune microenvironment. In summary, our findings support the use of hypomethylation as a biomarker to understand the mechanism of tumour immune environment.
DOI: 10.25549/one-ouc17556657
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.6084/m9.figshare.22316300.v1
title: DNA hypomethylation mediates immune response in pan-cancer

description: Abnormal DNA methylation is a fundamental characterization of epigenetics in cancer. Here we demonstrate that aberrant DNA methylating can modulate the tumour immune microenvironment in 16 cancer types. Differential DNA methylation in promoter region can regulate the transcriptomic pattern of immune-related genes and DNA hypomethylation mainly participated in the processes of immunity, carcinogenesis and immune infiltration. Moreover, many cancer types shared immune-related functions, like activation of innate immune response, interferon gamma response and NOD-like receptor signalling pathway. DNA methylation can further help identify molecular subtypes of kidney renal clear cell carcinoma. These subtypes are characterized by DNA methylation pattern, major histocompatibility complex, cytolytic activity and cytotoxic t lymphocyte and tumour mutation burden, and subtype with hypomethylation pattern shows unstable immune status. Then, we investigate the DNA methylation pattern of exhaustion-related marker genes and further demonstrate the role of hypomethylation in tumour immune microenvironment. In summary, our findings support the use of hypomethylation as a biomarker to understand the mechanism of tumour immune environment.
DOI: 10.25549/one-ouc17556811
title: Mattachine Society, chapter #102 monthly report (June 1953)
DOI: 10.25549/one-ouc17556810
title: Mattachine Society, public relations chapter #102 constitution and bylaws (1953)
DOI: 10.6084/m9.figshare.17073290
title: Additional file 4 of Systematic analysis of CCCH zinc finger family in Brassica napus showed that BnRR-TZFs are involved in stress resistance

description: Additional file 4. (XLS 32 kb)
DOI: 10.25549/one-ouc17556809
title: Mattachine Society, public relations chapter #102 correspondence (1953-1957)
DOI: 10.6084/m9.figshare.17073249
title: Additional file 4 of Molecular evolution of chloroplast genomes in subfamily Zingiberoideae (Zingiberaceae)

description: Additional file 4: Table S4. Codon content of all the protein coding genes of 10 assembled chloroplast genomes in subfamily Zingiberoideae.
DOI: 10.6084/m9.figshare.17073258
title: Additional file 7 of Molecular evolution of chloroplast genomes in subfamily Zingiberoideae (Zingiberaceae)

description: Additional file 7: Table S7. Details of simple sequence repeats (SSRs) types distribution and abundance in 10 Zingiberoideae chloroplast genomes.
DOI: 10.25549/one-ouc17556812
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17556815
title: Mattachine Society, public relations chapter #102 financial records (1953-1954)
DOI: 10.6084/m9.figshare.17073264.v1
title: Additional file 9 of Molecular evolution of chloroplast genomes in subfamily Zingiberoideae (Zingiberaceae)

description: Additional file 9: Table S9. Comparison of the long repeats among 10 assembled Zingiberoideae chloroplast genomes. a G. lancangensis. b G. marantina. c G. multiflora. d G. schomburgkii. e G. schomburgkii var. angustata. f H. coccineum. g H. neocarneum. h K. rotunda ‘Red Leaf’. i K. rotunda ‘Silver Diamonds’. j Z. recurvatum. k Total long repeat numbers of 10 assembled Zingiberoideae chloroplast genomes.
DOI: 10.25549/one-ouc17556816
title: Mattachine Society, public relations chapter #102 constitution and bylaws (1953)
DOI: 10.25549/one-ouc17556813
title: Mattachine Society, public relations chapter #102 constitution and bylaws (1953)
DOI: 10.25549/one-ouc17556817
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17556819
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17556818
title: Mattachine Society, public relations chapter #102 constitution and bylaws (1953)
DOI: 10.25549/one-ouc17556820
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17556823
title: Mattachine Society, public relations chapter #102 meeting minutes (1953-1954)
DOI: 10.25549/one-ouc17556822
title: Mattachine Society, Long Beach chapter #113, treasurer's reports (1953-1954)
DOI: 10.25549/one-ouc17556824
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17560100
title: Mattachine Society, California State Constitutional Convention (1953)

description: Mattachine Society; California State Constitutional Convention held in Los Angeles on April 11-12, 1953; materials include multiple proposals and annotated drafts for the constitution of the Mattachine Society (1953)
DOI: 10.25549/one-ouc17556826
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17560093
title: Los Angeles Mattachine Society, Inc., administrative records and promotional materials (1952-1964)

description: Los Angeles Mattachine Society, Inc.; bulletins, promotional materials, and administrative records, including the 1963 articles of incorporation; also includes photocopies of a notebook with notes documenting 1952 meetings of the Mattachine Society, also known as the Mattachine Foundation (1952-1964)
DOI: 10.25549/one-ouc17556828
title: Mattachine Society, chapter #102 monthly report (June 1953)
DOI: 10.25549/one-ouc17556833
title: Mattachine Society, public relations chapter #102 constitution and bylaws (1953)
DOI: 10.25549/one-ouc17556830
title: Mattachine Society, public relations chapter #102 financial records (1953-1954)
DOI: 10.25549/one-ouc17560089
title: Mattachine Society, minutes of business session of the third annual convention (1956)

description: Mattachine Society; minutes of the business session of the third annual convention of the Mattachine Society, held in San Francisco on April 13, 1956; includes resolution acknowledging the life and contributions of Alfred Kinsey upon his death (1956)
DOI: 10.25549/one-ouc17556831
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17556834
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17556835
title: Mattachine Society, public relations chapter #102 correspondence (1953-1957)
DOI: 10.25549/one-ouc17556839
title: Mattachine Society, Long Beach chapter #113, treasurer's reports (1953-1954)
DOI: 10.25549/one-ouc17556838
title: Mattachine Society, public relations chapter #102 correspondence (1953-1957)
DOI: 10.6084/m9.figshare.22316269.v1
title: Identification and characterization of extrachromosomal circular DNA in patients with high myopia and cataract

description: To explore the presence of extrachromosomal circular DNA (eccDNA) in the anterior capsule of the lens in the eyes of patients with cataract and with high myopia. Circle-Seq was performed to identify differences in the eccDNA and gene expression between the anterior capsule of the lens of patients with simple nuclear cataract (C, <i>n</i> = 6 cases) and patients with nuclear cataract along with high myopia (HM, <i>n</i> = 6 cases). The expression of eccDNA was confirmed using routine quantitative polymerase chain reaction. The eccDNA ranked in C and HM ranged in length from 0.017 kb − 9.9 Mb with two distinctive peaks detected at 0.2 kb and 0.5 kb, while eccDNA that were differentially expressed ranged in size from 0.05 kb − 57.8 kb with two distinctive peaks observed at 0.1 kb and 0.5 kb. Only 2.5% of the eccDNA in C and 2% in HM were&gt;25 kb in size. The gene-rich chromosomes contributed to more number of eccDNA/Mb, while several well-known high myopia candidate genes, including <i>catenin delta 2</i> (<i>CTNND2</i>) and <i>ubiquitin-like with PHD</i>, exhibited significantly increased levels of eccDNA in the anterior capsule of the lens in patients with high myopia. This study highlighted the topologic analysis of the anterior capsule of eyes with high myopia, which is an emerging direction for research and clinical applications. These findings suggested that eccDNA was commonly detected in eyes with high myopia and cataracts, and the candidate genes for high myopia identified in previous studies were also observed in the eccDNA.
DOI: 10.25549/one-ouc17556832
title: Mattachine Society, public relations chapter #102 constitution and bylaws (1953)
DOI: 10.25549/one-ouc17556837
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.6084/m9.figshare.16544041.v1
title: Additional file 2 of Genus-level evolutionary relationships of FAR proteins reflect the diversity of lifestyles of free-living and parasitic nematodes

description: Additional file 2: Table S1. Gene information of FAR in reannotation and original gene annotation.
DOI: 10.25549/one-ouc17556841
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.6084/m9.figshare.16544041
title: Additional file 2 of Genus-level evolutionary relationships of FAR proteins reflect the diversity of lifestyles of free-living and parasitic nematodes

description: Additional file 2: Table S1. Gene information of FAR in reannotation and original gene annotation.
DOI: 10.25549/one-ouc17556840
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.6084/m9.figshare.22316269
title: Identification and characterization of extrachromosomal circular DNA in patients with high myopia and cataract

description: To explore the presence of extrachromosomal circular DNA (eccDNA) in the anterior capsule of the lens in the eyes of patients with cataract and with high myopia. Circle-Seq was performed to identify differences in the eccDNA and gene expression between the anterior capsule of the lens of patients with simple nuclear cataract (C, <i>n</i> = 6 cases) and patients with nuclear cataract along with high myopia (HM, <i>n</i> = 6 cases). The expression of eccDNA was confirmed using routine quantitative polymerase chain reaction. The eccDNA ranked in C and HM ranged in length from 0.017 kb − 9.9 Mb with two distinctive peaks detected at 0.2 kb and 0.5 kb, while eccDNA that were differentially expressed ranged in size from 0.05 kb − 57.8 kb with two distinctive peaks observed at 0.1 kb and 0.5 kb. Only 2.5% of the eccDNA in C and 2% in HM were&gt;25 kb in size. The gene-rich chromosomes contributed to more number of eccDNA/Mb, while several well-known high myopia candidate genes, including <i>catenin delta 2</i> (<i>CTNND2</i>) and <i>ubiquitin-like with PHD</i>, exhibited significantly increased levels of eccDNA in the anterior capsule of the lens in patients with high myopia. This study highlighted the topologic analysis of the anterior capsule of eyes with high myopia, which is an emerging direction for research and clinical applications. These findings suggested that eccDNA was commonly detected in eyes with high myopia and cataracts, and the candidate genes for high myopia identified in previous studies were also observed in the eccDNA.
DOI: 10.25549/one-ouc17552478
title: Mattachine Society, American Civil Liberties Union (1956-1958)
DOI: 10.25549/one-ouc17556853
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17556856
title: Mattachine Society, public relations chapter #102 constitution and bylaws (1953)
DOI: 10.25549/one-ouc17556857
title: Mattachine Society, chapter #102 monthly report (June 1953)
DOI: 10.25549/one-ouc17557009
title: Mattachine Society, public relations chapter #102 financial records (1953-1954)
DOI: 10.25549/one-ouc17557013
title: Mattachine Society, Long Beach chapter #113, treasurer's reports (1953-1954)
DOI: 10.25549/one-ouc17557015
title: Mattachine Society, public relations chapter #102 financial records (1953-1954)
DOI: 10.25549/one-ouc17557014
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17557019
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17557022
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17557023
title: Mattachine Society, public relations chapter #102 correspondence (1953-1957)
DOI: 10.25549/one-ouc17557025
title: Mattachine Society, public relations chapter #102 correspondence (1953-1957)
DOI: 10.25549/one-ouc17558415
title: Mattachine Society, Los Angeles (Southern) Area Council, reports (1953-1955)
DOI: 10.25549/one-ouc17557020
title: Mattachine Society, public relations chapter #102 constitution and bylaws (1953)
DOI: 10.25549/one-ouc17557017
title: Mattachine Society, Long Beach chapter #113, treasurer's reports (1953-1954)
DOI: 10.25549/one-ouc17557027
title: Mattachine Society, Long Beach chapter #113, treasurer's reports (1953-1954)
DOI: 10.25549/one-ouc17557028
title: Mattachine Society, public relations chapter #102 constitution and bylaws (1953)
DOI: 10.25549/one-ouc17558424
title: Mattachine Society, proposed constitutional agenda and related material (1953)

description: Mattachine Society, drafts and proposed amendments to the Mattachine Society constitution and bylaws (1953)
DOI: 10.25549/one-ouc17558425
title: Mattachine Society, Los Angeles (Southern) Area Council, correspondence (1953-1959)
DOI: 10.25549/one-ouc17557024
title: Mattachine Society, public relations chapter #102 correspondence (1953-1957)
DOI: 10.25549/one-ouc17557021
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17557018
title: Mattachine Society, public relations chapter #102 meeting minutes (1953-1954)
DOI: 10.25549/one-ouc17557026
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17557030
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17557031
title: Mattachine Society, public relations chapter #102 financial records (1953-1954)
DOI: 10.25549/one-ouc17557032
title: Mattachine Society, public relations chapter #102 constitution and bylaws (1953)
DOI: 10.25549/one-ouc17557033
title: Mattachine Society, public relations chapter #102 correspondence (1953-1957)
DOI: 10.25549/one-ouc17557037
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17557038
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17557034
title: Mattachine Society, public relations chapter #102 meeting minutes (1953-1954)
DOI: 10.25549/one-ouc17557042
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17558430
title: Mattachine Society, Los Angeles (Southern) Area Council, correspondence (1953-1959)
DOI: 10.25549/one-ouc17558432
title: Mattachine Society, Los Angeles (Southern) Area Council, correspondence (1953-1959)
DOI: 10.25549/one-ouc17557039
title: Mattachine Society, Long Beach chapter #113, meeting minutes and reports (1953-1955)
DOI: 10.25549/one-ouc17557040
title: Mattachine Society, public relations chapter #102 meeting minutes (1953-1954)
DOI: 10.25549/one-ouc17557041
title: Mattachine Society, public relations chapter #102 correspondence (1953-1957)
DOI: 10.25549/one-ouc17557044
title: Mattachine Society, Long Beach chapter #113, treasurer's reports (1953-1954)
DOI: 10.6084/m9.figshare.16544050.v1
title: Additional file 4 of Genus-level evolutionary relationships of FAR proteins reflect the diversity of lifestyles of free-living and parasitic nematodes

description: Additional file 4: Table S3. Transcriptome data information for 11 nematodes.
DOI: 10.15468/dl.zqnljf
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ethmostigmus rubripes Brandt, 1840",
 "Country is Australia",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 47 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001198-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f767gn
title: Occurrence Download

description: A dataset containing 14775 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Laportea Gaudich."
 ]
}

 The dataset includes 14775 records from 371 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051768-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rgabmj
title: Occurrence Download

description: A dataset containing 31132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sphagnum cuspidatum Ehrh. ex Hoffm."
 ]
}

 The dataset includes 31132 records from 211 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244031-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76mxev
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus kungurensis Boriss."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0286396-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kcvtiy
title: Occurrence Download

description: A dataset containing 400 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Saccopteryx bilineata (Temminck, 1838)"
 ]
}

 The dataset includes 400 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001198-171109162308116/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxm2c3
title: Occurrence Download

description: A dataset containing 8772226 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NMNH Extant Specimen Records (USNM, US)"
 ]
}

 The dataset includes 8772226 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013637-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4vfgjw
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-67.38354 19.04966,-67.40112 17.53092,-64.13159 17.53092,-64.13159 18.0832,-65.13354 18.03306,-65.27417 18.90005,-67.38354 19.04966))",
 "HasCoordinate is true",
 "TaxonKey is Citharexylum spinosum L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 73 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007663-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.