cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.p65cka
title: Occurrence Download

description: A dataset containing 128447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Desmognathus)"
 ]
}

 The dataset includes 128447 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018456-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6657pw
title: Occurrence Download

description: A dataset containing 299 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynanchum gerrardi",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 299 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018469-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26036/cnp0007647
title: the potent probiotic properties and alcohol degradation capabilities of Lactiplantibacillus plantarum BGI-J9

description: Probiotics have demonstrated broad prospects in maintaining human health, and complete genome analysis enables unveiling the intrinsic probiotic mechanisms. In this study, the probiotic properties of Lactiplantibacillus plantarum BGI-J9 (BGI-J9) were explored via integrating complete genomic and phenotypic analysis. Results indicated that the high-quality complete genome of BGI-J9 comprises 3,128,867 bp with 2,926 coding sequences and an average GC content of 45%. Genomic annotation analysis revealed that BGI-J9 harbored nhaK, plsC, pyk, atp, opp, rps, rpl, rpm system genes, as well as plantaricin, glutathione peroxidase family, glutathione, catalase, thioredoxin encoding genes, and exhibited favorable gastrointestinal tolerance, antimicrobial activity, antioxidant activity in in vitro assays. Notably, alcohol degradation enzyme genes were identified in the BGI-J9 genome, which accounted for the potent in vitro alcohol dehydrogenase and acetaldehyde dehydrogenase activities and alcohol degradation capacity exhibited by BGI-J9. These findings indicated that BGI-J9 has the potential to assist in promoting alcohol degradation and mitigating alcohol-induced damage. In conclusion, this study first presented the complete genome of BGI-J9, furnishing a theoretical basis for its application in alleviating alcohol damage.
DOI: 10.15468/dl.3wnxy9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Catharus guttatus)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018471-250711103210423/datasets/export for details.
DOI: 10.15468/dl.qww5zt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ADL4861"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018472-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2by94w
title: Occurrence Download

description: A dataset containing 747 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tinnea aethiopica"
 ]
}

 The dataset includes 747 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018470-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2c6gxp
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Zonotrichia capensis [GBIF Backbone Taxonomy])",
 "Year is 2025",
 "PublishingOrg is one of (c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f)"
 ]
 }
 ]
}

 The dataset includes 19 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018475-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4zvnn
title: Occurrence Download

description: A dataset containing 128 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isatis stylophora"
 ]
}

 The dataset includes 128 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018473-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w5uz97
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Festuca rubra microphylla, Festuca rubra microphylla, Festuca rubra nigrescens, Festuca rubra nigrescens, Festuca saxetana, Festuca sparsa, Festuca subalpestris, Festuca subalpina, Festuca ultima, Festuca ventosana)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 11 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018478-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y9pmjs
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Zonotrichia capensis [GBIF Backbone Taxonomy])",
 "Year is 2025",
 "PublishingOrg is one of (c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f)"
 ]
 }
 ]
}

 The dataset includes 19 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018477-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15925254
title: ROR Data

description: Data dump from the Research Organization Registry (ROR), a community-led registry of open identifiers for research organizations.

Release v1.68 contains ROR IDs and metadata for 117,584 research organizations in JSON and CSV format, in schema versions 1 and 2. This includes the addition of 547 new records and metadata updates to 185 existing records. See the release notes.

Data format

Beginning with release v1.45 on 11 April 2024, data releases contain JSON and CSV files formatted according to both  schema v1 and schema v2. v2 files have `_schema_v2` appended to the end of the filename, ex v1.45-2024-04-11-ror-data_schema_v2.json. In order to maintain compatibility with previous releases, v1 files have no version information in the filename, ex v1.45-2024-04-11-ror-data.json

For both versions, the CSV file contains a subset of fields from the JSON file, some of which have been flattened for easier parsing. As ROR records and the ROR schema are maintained in JSON, CSVs are for convenience only. JSON is the format of record.

Release versioning

Beginning with v1.45 in April 2024, ROR has introduced schema versioning, with files available in schema v1 and schema v2. The ROR API default version, however, remains v1 and will be changed to v2 in April 2025. To align with the API, the data dump major version will remain 1 until the API default version is changed to v2. At that time, the data dump major version will be incremented to 2 per below.

Data releases are versioned as follows:



Minor versions (ex 1.1, 1.2, 1.3):  Contain changes to data, such as a new records and updates to existing records. No changes to the data model/structure.

Patch versions (ex 1.0.1):  Used infrequently to correct errors in a release. No changes to the data model/structure.

Major versions (ex 1.x, 2.x, 3.x):  Contains changes to data model/structure, as well as the data itself. Major versions will be released with significant advance notice.


For convenience, the date is also include in the release file name, ex: v1.0-2022-03-15-ror-data.zip.

The ROR data dump is provided under the  Creative Commons CC0 Public Domain Dedication. Location data in ROR comes from GeoNames and is licensed under a Creative Commons Attribution 4.0 license.
DOI: 10.15468/dl.yd7kmn
title: Occurrence Download

description: A dataset containing 21835 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lasioglossum malachurum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 21835 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018476-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ksr5f8
title: Occurrence Download

description: A dataset containing 6276 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ulex europaeus",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6276 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018482-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.musmxu
title: Occurrence Download

description: A dataset containing 5987 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gyraulus acronicus"
 ]
}

 The dataset includes 5987 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018479-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15827231
title: Data to Reproduce "Exploring Mixing Thresholds in Asteroseismic Stellar Evolution Models"

description: The zip file os_D_min_mesa.zip includes all of the necessary code to reproduce Figure 1 of Buchele 2025, "Exploring Mixing Thresholds in Asteroseismic Stellar Evolution Models". This work was done using the 24.08.01 version of MESA, the  7.2.1 version of GYRE (included in the MESA release) and the 24.7.1 version of the MESA SDK . Included is inlist - the inlist used to evolve the tracks run_star_extras - the routines used to save the frequency of the test mode as well as profiles during the specified agesgyre.in - the GYRE inlist file used to calculated the frequency of the test moderun_tracks.sh - a bash script that can be used to run all three tracks (with varying values of overshoot_D_min) with one command. This script uses the shmesa command included in MESA and requires that shmesa be added to the user's path. make_os_D_min_plot.py - a python script which generates Figure 1.
DOI: 10.5281/zenodo.15827232
title: Data to Reproduce "Exploring Mixing Thresholds in Asteroseismic Stellar Evolution Models"

description: The zip file os_D_min_mesa.zip includes all of the necessary code to reproduce Figure 1 of Buchele 2025, "Exploring Mixing Thresholds in Asteroseismic Stellar Evolution Models". This work was done using the 24.08.01 version of MESA, the  7.2.1 version of GYRE (included in the MESA release) and the 24.7.1 version of the MESA SDK . Included is inlist - the inlist used to evolve the tracks run_star_extras - the routines used to save the frequency of the test mode as well as profiles during the specified agesgyre.in - the GYRE inlist file used to calculated the frequency of the test moderun_tracks.sh - a bash script that can be used to run all three tracks (with varying values of overshoot_D_min) with one command. This script uses the shmesa command included in MESA and requires that shmesa be added to the user's path. make_os_D_min_plot.py - a python script which generates Figure 1.
DOI: 10.15468/dl.v26kp3
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ulex europaeus",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 182 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018481-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qjwztk
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ficus religiosa",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 26 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018484-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vc4wx3
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sus scrofa",
 "Country is Cook Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018483-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rehtet
title: Occurrence Download

description: A dataset containing 2961749 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Catharus guttatus)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 2961749 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018452-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6rsbk
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Desmognathus perlapsus)"
 ]
}

 The dataset includes 159 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018487-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2c6ytg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arundo vilnensis, Athernotus lanceolatus, Calamagrostis calamagrostis, Calamagrostis calamagrostis rufescens, Calamagrostis calamagrostis rufescens, Calamagrostis calamagrostis rufescens, Calamagrostis canescens convoluta, Calamagrostis canescens geniculata, Calamagrostis canescens gracilis, Calamagrostis canescens hirta)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018486-250711103210423/datasets/export for details.
DOI: 10.15468/dl.dcd4gr
title: Occurrence Download

description: A dataset containing 435 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Peru, Ecuador, Colombia, Brazil)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chiasmocleis ventrimaculata"
 ]
}

 The dataset includes 435 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018488-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cs2zkj
title: Occurrence Download

description: A dataset containing 7017 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Geometry POLYGON ((-90.46192 20.72179, -90.5125 20.49706, -90.51268 20.49107, -90.51382 20.27846, -90.47732 20.14585, -90.44561 20.12002, -90.41677 20.11604, -90.38583 20.13854, -90.36813 20.19475, -90.33038 20.33945, -90.28577 20.43424, -90.26585 20.42446, -90.2458 20.39584, -90.22323 20.41767, -90.22639 20.48568, -90.25108 20.51005, -90.33133 20.53288, -90.35802 20.56392, -90.36399 20.6075, -90.34766 20.6769, -90.34165 20.69381, -90.46192 20.72179))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 7017 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018485-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29575157
title: <b>Effects of </b><b><i>Pennisetum sinese</i></b><b> restoration on soil quality in an arid valley</b><b>: Insights from </b><b>soil functions</b>

description: Soil degradation and plant establishment have become major environmental and economic problems in arid and semiarid regions. <i>Pennisetum sinese</i>, as a typical C4 drought-tolerant plant, is effective in improving soil properties and controlling soil loss, but the mechanistic controls on soil quality dynamics remain nearly unknown.
DOI: 10.6084/m9.figshare.29575157.v1
title: <b>Effects of </b><b><i>Pennisetum sinese</i></b><b> restoration on soil quality in an arid valley</b><b>: Insights from </b><b>soil functions</b>

description: Soil degradation and plant establishment have become major environmental and economic problems in arid and semiarid regions. <i>Pennisetum sinese</i>, as a typical C4 drought-tolerant plant, is effective in improving soil properties and controlling soil loss, but the mechanistic controls on soil quality dynamics remain nearly unknown.
DOI: 10.15468/dl.b6r6sr
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mastacembelus marchei"
 ]
}

 The dataset includes 289 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018490-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wedm58
title: Occurrence Download

description: A dataset containing 275 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Discopodium penninervium",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 275 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018489-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a25qnc
title: Occurrence Download

description: A dataset containing 117246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Artemisia campestris, Artemisia campestris, Artemisia campestris, Artemisia campestris, Artemisia campestris, Artemisia campestris, Artemisia campestris, Artemisia campestris)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 117246 records from 837 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018474-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n76zuy
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abolboda paniculata Maguire"
 ]
}

 The dataset includes 36 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0291832-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tmg4ah
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "DatasetKey is one of (Fortalecimiento de las colecciones de ECOSUR. Primera fase (Arachnida Tapachula), Museum of Comparative Zoology, Harvard University)",
 "TaxonKey is Deinopidae"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069497-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4efef7
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Pavonia narcissi Krapov."
 ]
}

 The dataset includes 50 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0297630-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.