cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14045510.v1
title: Long-distance dispersal events rather than growth habit and life-history traits affect diversification rate in tribe Apieae (Apiaceae)

description: These are online supplements to the article:Long-distance dispersal events rather than growth habit and life-history traits affect diversification rate in tribe Apieae (Apiaceae)<br>Kamil E. Frankiewicz, Łukasz Banasiak, Alexei Oskolski, Jean-Pierre Reduron, Jorge Alfredo Reyes-Betancort, Mohammed Alsarraf, Paulina Trzeciak, Krzysztof Spalik<br>published in the Botanical Journal of the Linnean Society
DOI: 10.6084/m9.figshare.26525947.v1
title: Supplementary Material for: Feasibility of assessment of habitual salt intake using a 24-hour urinary salt excretion self-measuring device

description: Introduction: To assess habitual salt intake, tools are needed to measure 24-h urinary salt excretion repeatedly. We developed and validated a new portable salt monitor, which measures salt excreted per urination and sums the values to provide an accurate estimate of urinary salt excretion over 24 h. Methods: A previously developed salt monitor was improved with respect to the capacity, volume sensors, and equation for urinary sodium chloride concentration estimation. In 20 healthy Japanese female volunteers, 24-h urinary salt excretion was measured using the salt monitor and a conventional 24-h urine collection method on eight non-consecutive days. Results: In a total of 157 days, there were no fixed or proportional errors between the methods. The mean salt intake over 8 days was 8.5 ± 2.0 g/day for the 24-h urine collection and 8.3 ± 2.3 g/day for the salt monitor, showing a strong correlation (r = 0.912, p &lt; 0.001). At a cut-off value of 6 g, the salt monitor was able to completely classify individuals by habitual salt intake. Discussion/Conclusion: The validity of the new salt monitor was confirmed. The device can be considered an alternative to the traditional 24-h urine collection for repeated surveys and for self-management of daily salt intake.
DOI: 10.6084/m9.figshare.3555057.v1
title: Supplement 1. Site means (mean number of acorns counted per 30 seconds) and environmental data (from the PRISM database) used in the analyses (1994–2011).

description: File List Acorn_data.txt (md5: 7c7db30d39b36313243ab0042b902d11) Description Acorn_data.txt is a tab-delimited ASCII file. The file contains data for mean acorn production (measured as mean number of acorns counted per 30 sec) for <i>Q. lobata</i> and <i>Q. douglasii</i> for 12 California sites surveyed between 1994 and 2011 and weather data as estimated from the PRISM database. Column definitions: 1 = Site name<br> 2 = Latitude (decimal degrees)<br> 3 = Longitude (decimal degrees)<br> 4 = Year<br> 5 = Species<br> 6 = Mean log-transformed count (acorns per 30 sec)<br> 7 = Mean maximum April temperature<br> 8 = Mean maximum March temperature<br> 9 = March rainfall<br> 10 = April rainfall<br> 11 = March rainfall the prior year (year x - 1)<br> 12 = April rainfall the prior year (year x - 1)<br> 13 = Mean maximum summer temperature (May through August)<br> 14 = Mean maximum summer temperature the prior year (year x - 1)<br> 15 = Winter rainfall (Nov. of year x - 1 through Feb. of year x)<br> 16 = Winter rainfall the prior year (Nov. of year x - 2 through Feb. of year x - 1)<br> 17 = Mean minimum winter temperature<br> 18 = Mean maximum autumn temperature (Sept. through Nov. of year x - 1)<br> 19 = Mean maximum March temperature the prior year (year x - 1) <br> 20 = Mean maximum April temperature the prior year (year x - 1)<br> 21 = 'Combined environmental variable' for <i>Q. lobata</i> (see text)<br> 22 = 'Combined environmental variable' for <i>Q. douglasii</i> (see text)
DOI: 10.6084/m9.figshare.25957918.v1
title: scEiaD dataset

description: scEiaD dataset used for benchmarking feature selection for integration in H5AD format. Files contain the full raw dataset, the processed batches used to create the reference and the processed batches used as a query.Note: These files have been saved with compression to reduce file size. Re-saving without compression will reduce reading times if needed.If used, please cite:<br>Swamy VS, Fufa TD, Hufnagel RB, McGaughey DM. Building the mega single-cell transcriptome ocular meta-atlas. Gigascience. 2021;10. Available from: http://dx.doi.org/10.1093/gigascience/giab061
DOI: 10.6084/m9.figshare.12010518.v1
title: Additional file 1 of MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks

description: Additional file 1: Excel file: Supplementary tables S1–S6 for additional results.
DOI: 10.6084/m9.figshare.22284379.v1
title: Supplementary Material for: Zanubrutinib in the maintenance treatment of elderly people with primary central nervous system lymphoma (PCNSL): a report of two cases

description: Primary central nervous system lymphoma (PCNSL) is a rare and aggressive extranodal non-Hodgkin lymphoma. The predominant subtype is diffuse large B-cell lymphoma (DLBCL), and no systematic lesion is identified at diagnosis. BTKi (Bruton's tyrosine kinase inhibitor) has demonstrated significant clinical activity in DLBCL. We retrospectively reported two patients who began with memory deterioration or right limb movement disabilities. A cranial magnetic resonance imaging (MRI) scan and a brain biopsy were used to diagnose PCNSLs. For induction treatment, middle-dose methotrexate (HD-MTX) regimens were initiated. Due to the patients' inability to tolerate continuous MTX regimens due to severe infections, zanubrutinib was chosen as the maintenance regimen instead. For one patient, the drug was well-tolerated, he achieved sustained complete remission (CR) as demonstrated by MRI, and he survived 14 months after diagnosis. Another patient achieved partial remission (PR) and continued to live six months after diagnosis. As an intriguing possibility, we successfully extended the PFS and OS in elderly PCNSL patients treated with zanubrutinib.
DOI: 10.6084/m9.figshare.26526730.v1
title: Crotalus_adamanteus_toxin_annotation

description: Toxin annotation of Crotalus adamanteus genome using ToxCodAn-Genome.BioSample SAMN30275639 and BioProject PRJNA868880 in NCBI.<br>
DOI: 10.6084/m9.figshare.28722149.v1
title: Table_S14_enr_immune_7d_tmz_GO.csv

description: <b>Table S14. </b>Gene Set Enrichment Analysis (GSEA) in immune cells from brain tumors at 7d postimplantation treated with TMZ.
DOI: 10.6084/m9.figshare.3531674.v1
title: Appendix A. Description of mark–recapture methods used to estimate mortality rates in Brachyrhaphis rhabdophora populations.

description: Description of mark–recapture methods used to estimate mortality rates in Brachyrhaphis rhabdophora populations.
DOI: 10.6084/m9.figshare.23551944.v1
title: 24 Nwestbladi. BUSCO completeness report. Eukaryota. Illumina

description: Results of the BUSCO analysis from the genome of Nemertoderma westbladi sequenced with Illumina. The database was Eukaryota_odb10
DOI: 10.6084/m9.figshare.21210566.v3
title: Excel files

description: This folder contains Excel files with measurments of shark bodies (metadata) and results from denticle detection and analysis.
DOI: 10.6084/m9.figshare.882818.v1
title: Gaussian Job Archive for C7H11N3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.3808125.v1
title: Supplementary Material for: The Effect of Age on Characteristics and Mortality of Intracerebral Hemorrhage in the Oldest-Old

description: <i>Background:</i> Incidence of acute intracerebral hemorrhage (ICH) increases with age, but there is a lack of information about ICH characteristics in the oldest-old (age ≥85 years). In particular, there is a need for information about hematoma volume, which is included in most clinical scales for prediction of mortality in ICH patients. Many of these scales also assume that, independent of ICH characteristics, the oldest-old have a higher mortality than younger elderly patients (age 65-74 years). However, supporting evidence from cohort studies is limited. We investigated ICH characteristics of oldest-old subjects compared to young (&lt;65 years), young-old (65-74 years) and old-old (75-84 years) subjects. We also investigated whether age is an independent mortality predictor in elderly (age ≥65 years) subjects with acute ICH.<i>Methods:</i> We retrospectively collected clinical and neuroimaging data of 383 subjects (age 34-104 years) with acute supratentorial primary ICH who were admitted to an Italian Stroke Unit (SU) between October 2007 and December 2014. Measured ICH characteristics included hematoma location, volume and intraventricular extension of hemorrhage on admission CT scan; admission Glasgow Coma Scale ≤8 and hematoma expansion (HE) measured on follow-up CT-scans obtained after 24 h. General linear models and logistic models were used to investigate the association of age with ICH characteristics. These models were adjusted for pre-admission characteristics, hematoma location and time from symptom onset to admission CT scan. Limited to elderly subjects, Cox models were used to investigate the association of age with in-SU and 1-year mortality: the model for in-SU mortality adjusted for pre-admission and ICH admission characteristics and the model for 1-year mortality additionally adjusted for functional status and disposition at SU discharge. <i>Results:</i> Independent of pre-admission characteristics, hematoma location and time from symptom onset to admission CT-scan, oldest-old subjects had the highest admission hematoma volume (p &lt; 0.01). Age was unrelated to all other ICH characteristics including HE. In elderly patients, multivariable adjusted risk of in-SU and 1-year mortality did not vary across age categories. <i>Conclusions:</i> Oldest-old subjects with acute supratentorial ICH have higher admission hematoma volume than young and young-old subjects but do not differ for other ICH characteristics. When taking into account confounding from ICH characteristics, risk of in-SU and 1-year mortality in elderly subjects with acute supratentorial ICH does not differ across age categories. Our findings question use of age as an independent criterion for stratification of mortality risk in elderly subjects with acute ICH.
DOI: 10.6084/m9.figshare.20422224.v1
title: Genus and species level mean wood density of DRC tree species

description: This dataset contains mean genus- and species-specific wood density values (and associated uncertainty) of tree species found in the National Forest Inventory (NFI) of the Democratic Republic of Congo. The dataset has been produced using the BIOMASS R package (v. 2.1.5.9). The dataset is associated to the following publication : <br> Lamulamu A., Ploton P., Birigazzi L., Xu L., Saatchi S.S. and Kibambe Lubamba J.P., <em>in review</em>. Assessing the predictive power of Democratic Republic of Congo’s national spaceborne biomass map over independent test samples. <em>Remote Sensing</em>.
DOI: 10.6084/m9.figshare.21088558.v1
title: string_network

description: string network for Graphene project
DOI: 10.6084/m9.figshare.24311707.v2
title: eIF6 Deficiency Alleviates Atherosclerosis

description: 16S rRNA测序原始数据和数据
DOI: 10.15468/dl.swwsd4
title: Occurrence Download

description: A dataset containing 15020 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Oligia latruncula (Denis & Schiffermüller), 1775"
 ]
}

 The dataset includes 15020 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009466-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.23894370.v1
title: Observational data set used in Anthropogenic amplification of biogenic secondary organic aerosol production

description: Observational data sets used in the manuscript Anthropogenic amplification of biogenic secondary organic aerosol production. The IMPROVE filter OA and sulfate data are available at http://views.cira.colostate.edu/iwdw/ (last access: July 13, 2020). The SEARCH dataset is from Dr. Eric Edgerton. The ACTRIS ACSM OA data are available at https://ebas-data.nilu.no/ (last access: November 30, 2021). The ARM ACSM OA data are available at https: //www.arm.gov/data/ (last access: July 8, 2020). The EPA’s AQS data are available at https://aqs.epa.gov (last access: May 25, 2022). All data sets have been averaged to monthly mean values.
DOI: 10.6084/m9.figshare.17087024.v1
title: PUBMED search details

description: The Pubmed search results was dowloaded from the site as a file.
DOI: 10.6084/m9.figshare.28349609.v1
title: Source_Data.xlsx

description: Source data for the figures of "Dynamics of evoked responses in hippocampal pathways are encoded by the duration of vigilance states. Marchal et al., Nature Communications, 2025"
DOI: 10.6084/m9.figshare.1119790.v1
title: Supplementary Figure 9, Dreadnoughtus skeleton - Lacovara et al., 2014, A Gigantic, Exceptionally Complete Titanosaurian Sauropod Dinosaur from Southern Patagonia, Argentina, Scientific Reports,

description: Supplementary Fig. 9. Digital reconstruction of known skeletal elements of <em>Dreadnoughtus schrani</em> (MPM-PV 1156 and MPM-PV 3546) in left lateral view. In the reconstruction, two left and one right dorsal ribs were mirrored to yield a total of six representative ribs. Moreover, except for the sternal plate, the right pectoral girdle and forelimb were mirrored from the left. The right femur, fibula, and astragalus were also mirrored from the left side, whereas the left metatarsals and pedal ungual were mirrored from the right. <strong>Note:</strong> The placement of skeletal elements in this reconstruction is approximate. Taphonomic deformation within the axial skeleton prevented some bones from being property articulated. Thus, error has been introduced into the skeletal proportions represented here. Our most accurate estimates for the skeletal proportions of <em>Dreadnoughtus</em> can be found in the 2D reconstruction (Figure 2), published in Lacovara et al (2014). (See the link below)
DOI: 10.11583/dtu.13286294.v1
title: ERA5 data for air density calculations in WAsP

description: This is the ERA5 dataset that can be used to calculate air density for wind energy purposes using the equations presented in https://doi.org/10.3390/en12112038. The NetCDF file contains mean fields of monthly means from 2010 to 2020 of the variable temperature, surface pressure, specific humidity and the lapse rate. The horizontal grid resolution is 0.25 degrees and covers the whole globe. These fields are used in the WAsP software version 12.6 and above to calculate the air density at specified heights above mean sea level. The WAsP software (www.wasp.dk) is the industry standard method to calculate the annual energy production of wind farms. The ERA5 data are generated using Copernicus Climate Change Service information [2020]
DOI: 10.6084/m9.figshare.21982691.v2
title: Supplementary Material for: IL-37 Ameliorates Renal Fibrosis by Restoring CPT1A Mediated Fatty Acid Oxidation in Diabetic Kidney Disease

description: Introduction: Diabetic kidney disease (DKD) is a major source of chronic kidney disease (CKD) and end-stage renal disease (ESRD). The injury of glomerular in DKD is the primary focus, however proximal tubulopathy also is an indispensable factor in the progression of DKD. Interleukin-37 (IL-37), an anti-inflammatory cytokine of IL-1 family member, has been demonstrated to be associated with diabetes and its relative complications in recent years, but the effect of IL-37 on renal fibrosis in DKD is unclear. Methods: We established streptozotocin plus high fat diet (STZ/HFD)-induced DKD mice model with wild type (WT) or IL-37 transgenic (IL-37tg) mice. Masson and HE staining, immunostaining, and Western blot were used to observe renal fibrosis. In addition, RNA-sequencing was applied to explore the potential mechanisms of IL-37. In vitro, treatment of human proximal tubular (HK-2) cells with 30 mmol/L high glucose or 300 ng/ml recombinant IL-37 further elucidated the possible mechanism of IL-37 inhibition of DKD renal fibrosis. Results: In this work, we first verified the decreased expression of IL-37 in kidney of DKD patient and its correlation with clinical features of renal impairment. Moreover, IL-37 expression markedly attenuated proteinuria and renal fibrosis in DKD mice. Using RNA-sequencing, we found and confirmed a novel role of IL-37 in ameliorating fatty-acid oxidation (FAO) reduction of renal tubular epithelial cells both in vivo and in intro. In addition, further mechanistic studies showed that IL-37 alleviated the FAO reduction in HK-2 cells and renal fibrosis in DKD mice through upregulating carnitine palmitoyl-transferase 1A (CPT1A), an important catalyzer for FAO pathway. Conclusion: These data suggest that IL-37 attenuates renal fibrosis via regulating FAO in renal epithelial cells. Upregulation of IL-37 levels might be an effective therapeutic avenue for DKD.
DOI: 10.6084/m9.figshare.24637401.v1
title: Supplementary Material for: A Multicenter Phase 2 Trial Evaluating the Efficacy and Safety of Preoperative Lenvatinib Therapy for Patients with Advanced Hepatocellular Carcinoma (LENS-HCC Trial)

description: Introduction: The phase III REFLECT trial demonstrated that lenvatinib was superior to sorafenib in terms of progression-free survival (PFS), time to progression, and objective response rate (ORR) for patients with unresectable hepatocellular carcinoma (HCC). This study assessed the efficacy and safety of preoperative lenvatinib therapy for patients with oncologically or technically unresectable HCC. Methods: In this multicenter single-arm phase II trial, patients with advanced HCC and factors suggestive of a poor prognosis (macroscopic vascular invasion, extrahepatic metastasis, or multinodular tumors) were enrolled. Patients with these factors, even with technically resectable HCC, were defined as oncologically unresectable because of the expected poor prognosis after surgery. After 8 weeks of lenvatinib therapy, the patients were assessed for resectability, and tumor resection was performed if the tumor was considered technically resectable. The primary endpoint was the surgical resection rate. The secondary endpoints were the macroscopic curative resection rate, overall survival (OS), ORR, PFS, and the change in the indocyanine green retention rate at 15 minutes as measured before and after lenvatinib therapy. The trial was registered with the Japan Registry of Clinical Trials (s031190057). Results: Between July 2019 and January 2021, 49 patients (42 oncologically unresectable patients and 7 technically unresectable patients) from 11 centers were enrolled. The ORR was 37.5% based on mRECIST and 12.5% based on RECIST version 1.1. Thirty-three patients underwent surgery (surgical resection rate: 67.3%) without perioperative mortality. The surgical resection rate was 76.2% for oncologically unresectable patients and 14.3% for technically unresectable patients. The 1-year OS rate and median PFS were 75.9% and 7.2 months, respectively, with a median follow-up period of 9.3 months. Conclusions: The relatively high surgical resection rate seen in this study suggests the safety and feasibility of lenvatinib therapy followed by surgical resection for patients with oncologically or technically unresectable HCC.
DOI: 10.6084/m9.figshare.24137895.v2
title: The supplementary data for land use projections"

description: This is the full dataset that is needed to run the model described in the paper (see title).<br><br><br>
DOI: 10.6084/m9.figshare.11839443.v1
title: Analysis of pollen rain in a subandean forest fragment in Colombia

description: Abstract We carried out a modern pollen rain analysis and established its relationship with a Subandean forest fragment in the Cordillera Oriental of Colombia between 1,500 - 2,400 masl RAP transects were performed in order to identify plant species. In each transect, moss samples were collected randomly and processed at the laboratory in order to obtain pollen rain data. Based on pollen grains and vegetation identification and count, we developed pollen diagrams and diversity analysis, and determined the pollen rain and its relation with the vegetation. Cluster and Detrended correspondence analysis (DCA) were performed to determine altitude-associated ecological pollinic species assembly. A total of 66 palynomorphs were identified, being trees the dominant plant habit. The sites located at 2,100 and 2,400 m a.s.l. showed higher pollen diversity. Finally, the Cluster and the DCA show three main groups composed of species that generate a possible dividing line between the low and the high Subandean forest, resulting in new information that can be used for paleoecological interpretation.
DOI: 10.6084/m9.figshare.12421007.v1
title: Rodriguésia - Material Suplementar / Supplementary Material - Flora fanerogâmica do Jardim Botânico da Universidade Federal de Juiz de Fora, Minas Gerais, Brasil

description: <b>Tabela S1 - </b>Composição florística do Jardim Botânico da Universidade Federal de Juiz de Fora. As espécies são listadas por família, em ordem alfabética e encontram-se acompanhadas do número dos coletores. Hábitos: árvore, arbusto, erva, epífita, liana, parasita; <i>Habitats</i>: I = interior de mata; B = borda de mata; I.ag. = interior de mata em área úmida e/ou próágua; A.um. = áreas úmidas ao redor do lago; Aquat. = espécies hidrófitas; origem: nativa, exótica, cultivada e naturalizada. <b>Table S1</b> - Floristic composition of the Botanic Garden of the Federal University of Juiz de Fora. The species are listed by family, in alp = forest interior; B = forest edge; I.ag. = forest interior in a wet area and/or near watercourse; A.um. = moist areas around the lake; Aquat. = Hydrophytic species; origin: native, exotic, cultivated and naturalized.
DOI: 10.6084/m9.figshare.20078630.v1
title: Process-explicit simulations of human migration in North America 19,000 years ago to present

description: We simulated the peopling of North America from 19,000 years BP to present using the Climate-Informed Genetic Model. We used a set of 4,950 values for the demographic parameters of the model, based on a previous optimization of these parameters on genetic data. We ran these simulations twice: once parametrised with the HadCM3 palaeoclimate model, and once with the TraCE-21ka palaeoclimate simulation. <br> Here we provide the median and MAD (median absolute deviation) of human abundance in North America, averaged across each set of simulations based on the HadCM3 and TraCE-21ka palaeoclimate models. These are provided as GeoTIFF files in standard longitude-latitude WGS84 projection. The extent is North America (170W to 49W, 15N to 90N) at a spatial resolution of 1 degree by 1 degree. The timescale is from 19,000 years ago to present at a temporal resolution of 25 years.