cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21839880
title: Supplementary Material for: Prognostic value of amniotic fluid viral load to predict adverse outcome in pregnancies complicated by congenital Cytomegalovirus infection: a multicenter study

description: Introduction: To report the prognostic value of Cytomegalovirus (CMV) viral load in the amniotic fluid (AF) in predicting the outcome of infected pregnancies. Methods: Multicenter retrospective study involving 11 Italian referral centers from 2012 to 2021. Inclusion criteria were fetuses with confirmed congenital CMV infection. The primary outcome was the prognostic value accuracy of CMV qPCR in AF in predicting the risk of additional anomalies detected either at follow-up ultrasound or fetal MRI. The secondary outcome was prediction of post-natal clinical symptoms related CMV infection. Multivariate logistic regression and area under the curve (AUC) analyses were used to analyze the data. Results: 104 fetuses were included. Associated anomalies detected at follow-up ultrasound or fetal MRI were detected in 14.4% of cases (15/104). Mean AF CMV viral load was significantly higher in fetuses with compared to those without additional anomalies at follow-up ultrasound or fetal MRI (3346634.27±402582.95 vs 761934±222513,2 p&lt;0.001). At multivariate logistic regression analysis, CMV AF viral load was independently associated with the presence of additional anomalies at follow up ultrasound or MRI, with an OR of 1.07 (p= 0.010), while maternal age(p=0.24), trimester at maternal infection (p= 0.97), type of infection (primary vs non-primary) (p=0.12) were not. CMV AF viral load had AUC of 0.755 for the occurrence of anomalies due to CMV infection, with an optimal cut-off point of &gt;1310520 copies/ml, a sensitivity of 66.7% and a specificity of 84.3% a positive likelihood ratio of 4.24. Once excluding fetuses with anomalies at ultrasound or MRI, the diagnostic performance of qPCR in identifying fetuses with symptomatic infection after birth was low, with an AUC of 0.586, Conclusion: CMV viral load at second trimester amniocentesis has a moderate accuracy for the occurrence of CMV related anomalies in fetuses with congenital infection and normal ultrasound at the initial diagnosis. Conversely, prediction of symptomatic infection is low.
DOI: 10.6084/m9.figshare.21839880.v1
title: Supplementary Material for: Prognostic value of amniotic fluid viral load to predict adverse outcome in pregnancies complicated by congenital Cytomegalovirus infection: a multicenter study

description: Introduction: To report the prognostic value of Cytomegalovirus (CMV) viral load in the amniotic fluid (AF) in predicting the outcome of infected pregnancies. Methods: Multicenter retrospective study involving 11 Italian referral centers from 2012 to 2021. Inclusion criteria were fetuses with confirmed congenital CMV infection. The primary outcome was the prognostic value accuracy of CMV qPCR in AF in predicting the risk of additional anomalies detected either at follow-up ultrasound or fetal MRI. The secondary outcome was prediction of post-natal clinical symptoms related CMV infection. Multivariate logistic regression and area under the curve (AUC) analyses were used to analyze the data. Results: 104 fetuses were included. Associated anomalies detected at follow-up ultrasound or fetal MRI were detected in 14.4% of cases (15/104). Mean AF CMV viral load was significantly higher in fetuses with compared to those without additional anomalies at follow-up ultrasound or fetal MRI (3346634.27±402582.95 vs 761934±222513,2 p&lt;0.001). At multivariate logistic regression analysis, CMV AF viral load was independently associated with the presence of additional anomalies at follow up ultrasound or MRI, with an OR of 1.07 (p= 0.010), while maternal age(p=0.24), trimester at maternal infection (p= 0.97), type of infection (primary vs non-primary) (p=0.12) were not. CMV AF viral load had AUC of 0.755 for the occurrence of anomalies due to CMV infection, with an optimal cut-off point of &gt;1310520 copies/ml, a sensitivity of 66.7% and a specificity of 84.3% a positive likelihood ratio of 4.24. Once excluding fetuses with anomalies at ultrasound or MRI, the diagnostic performance of qPCR in identifying fetuses with symptomatic infection after birth was low, with an AUC of 0.586, Conclusion: CMV viral load at second trimester amniocentesis has a moderate accuracy for the occurrence of CMV related anomalies in fetuses with congenital infection and normal ultrasound at the initial diagnosis. Conversely, prediction of symptomatic infection is low.
DOI: 10.6084/m9.figshare.22060916
title: 16 S

description: <strong>Molecular phylogeny of two </strong><em><strong>Aliinostoc</strong></em><strong> isolates from a paddy field</strong>
DOI: 10.6084/m9.figshare.22060916.v1
title: 16 S

description: <strong>Molecular phylogeny of two </strong><em><strong>Aliinostoc</strong></em><strong> isolates from a paddy field</strong>
DOI: 10.6084/m9.figshare.22060928
title: Supplementary Material for: A Large-Scale Observational Analysis of Social Media Data Reveals Major Public Misperception of the Attainability of Drastic Weight Loss by Dieting

description: <b><i>Introduction:</i></b> Diet forums in social media websites provide an opportunity to glimpse the experience of different weight loss diet strategies reported by tens of thousands of individuals. <b><i>Methods:</i></b> We analyzed all postings with weight information from the six major Reddit weight loss diet forums (“subreddits”) as reported by forum participants. <b><i>Results:</i></b> Data were collected from January 2011 to April 2020 from all 55,900 users posting weight information. Average start BMI was in the overweight or obese range (26–34 kg/m<sup>2</sup>), and average goal BMI was in the normal range (21.5–24.5 kg/m<sup>2</sup>) for all subreddits. There is correlation between start BMI and goal BMI (<i>R</i><sup>2</sup> = 0.63, <i>p</i> &lt; 10<sup>−10</sup>) and between planned weight loss and reported weight loss (<i>R</i><sup>2</sup> = 0.56, <i>p</i> &lt; 10<sup>−10</sup>). Approximately 80% of forum participants reported a weight loss that was greater than 5% of their initial body weight. Actual reported weight loss was less than half of goal weight loss. Average reported weight loss and adherence were highest in the keto and loseit subreddits. More upvotes and fewer downvotes were associated with higher reported weight loss in five of the six subreddits. <b><i>Conclusions:</i></b> Despite the need for cautious interpretation of these data due to self-selection of users who updated weight loss and the possibility of unreliable weight reports, the study has several findings. Average goal BMI was in the normal weight range, demonstrating a highly unrealistic perception, in a very large lay-public cohort, of the plausibility of losing all excess weight. The success in weight loss and maintenance in self-selected individuals who continued reporting weight for many months may demonstrate the subjective value some individuals can obtain from forum participation.
DOI: 10.15783/c74g60
title: CRAWDAD dataset tecnalia/humanet (v. 2012-06-12)

description: Our study analyzes the limitations of Bluetooth-based trace acquisition 
initiatives carried out until now in terms of granularity and reliability. We 
then go on to propose an optimal configuration for the acquisition of 
proximity traces and movement information using a fine-tuned Bluetooth system 
based on custom HW. With this system and based on such a configuration, we 
have carried out an intensive human trace acquisition experiment resulting in 
a proximity and mobility database of more than 5 million traces with a minimum
granularity of 5 s.
description: Changelog: the initial version
DOI: 10.15783/c78598
title: CRAWDAD dataset sunysb/multi_channel (v. 2009-02-24)

description: We conduct measurement using two mesh network testbeds in two diﬀerent 
frequency bands – 802.11g in 2.4GHz band and 802.11a in 5GHz band.
description: Changelog: the initial version
DOI: 10.6084/m9.figshare.22060964
title: Demo data for the MATLAB code for analyzing the connection between the medial septum and hippocampal oscillations beyond the theta rhythm.

description: Demo session data, showing the required data format and hierarchy for the 'MATLAB code for analyzing the connection between the medial septum and hippocampal oscillations beyond the theta rhythm' https://github.com/kiralyb/MS_mod_tSC and the 'The medial septum modulates hippocampal oscillations beyond the theta rhythm' by Király et al.
DOI: 10.3886/e184663
title: Cancer warning label study

description: The objective of this research is to examine the role of different cancer warning labels in communicating alcohol-related cancer risks.
DOI: 10.3886/e184663v1
title: Cancer warning label study

description: The objective of this research is to examine the role of different cancer warning labels in communicating alcohol-related cancer risks.
DOI: 10.5281/zenodo.7409120
title: Chiral Active Rods Simulation Data I

description: Simulation data of agent-based simulations of active point particles following the following overdamped Langevin dynamics: d/dt x_i= v* cos(phi_i) d/dt y_i= v* sin(phi_i) d/dt phi_i= omega + gamma*\sum_{j is neighbor of i} sin[2*(phi_j-phi_i)] + sigma*xi_i with independent Gaussian white noise xi_i. i and j are considered to be neighbors if their distance is less than R. Parameters: sigma=sqrt(2), R=1, v=1, simulation box size: Lx=Ly=sqrt(N/10), N, gamma, omega are given in the data base. Periodic boundary conditions are used. A second order discretization scheme was used to integrate the equation of motion.
description: The author acknowledges funding through a 'María Zambrano' postdoctoral grant at University of Barcelona financed by the Spanish Ministerio de Universidades and the European Union (Next Generation EU/PRTR). The author thanks Universitätsrechenzentrum Greifswald for supporting this work by providing computational resources.
DOI: 10.5281/zenodo.7409119
title: Chiral Active Rods Simulation Data I

description: Simulation data of agent-based simulations of active point particles following the following overdamped Langevin dynamics: d/dt x_i= v* cos(phi_i) d/dt y_i= v* sin(phi_i) d/dt phi_i= omega + gamma*\sum_{j is neighbor of i} sin[2*(phi_j-phi_i)] + sigma*xi_i with independent Gaussian white noise xi_i. i and j are considered to be neighbors if their distance is less than R. Parameters: sigma=sqrt(2), R=1, v=1, simulation box size: Lx=Ly=sqrt(N/10), N, gamma, omega are given in the data base. Periodic boundary conditions are used. A second order discretization scheme was used to integrate the equation of motion.
description: The author acknowledges funding through a 'María Zambrano' postdoctoral grant at University of Barcelona financed by the Spanish Ministerio de Universidades and the European Union (Next Generation EU/PRTR). The author thanks Universitätsrechenzentrum Greifswald for supporting this work by providing computational resources.
DOI: 10.5281/zenodo.7501822
title: Chiral Active Rods Simulation Data II

description: Simulation data of agent-based simulations of active point particles following the following overdamped Langevin dynamics: d/dt x_i= v* cos(phi_i) d/dt y_i= v* sin(phi_i) d/dt phi_i= omega + gamma*\sum_{j is neighbor of i} sin[2*(phi_j-phi_i)] + sigma*xi_i with independent Gaussian white noise xi_i. i and j are considered to be neighbors if their distance is less than R. Parameters: sigma=sqrt(2), R=1, v=1, simulation box size: Lx=Ly=sqrt(N/10), N, gamma, omega are given in the data base. Periodic boundary conditions are used. Euler-Maruyama scheme was used to integrate the equations of motion.
description: The author acknowledges funding through a 'María Zambrano' postdoctoral grant at University of Barcelona financed by the Spanish Ministerio de Universidades and the European Union (Next Generation EU/PRTR). The author thanks Universitätsrechenzentrum Greifswald for supporting this work by providing computational resources.
DOI: 10.5281/zenodo.7501821
title: Chiral Active Rods Simulation Data II

description: Simulation data of agent-based simulations of active point particles following the following overdamped Langevin dynamics: d/dt x_i= v* cos(phi_i) d/dt y_i= v* sin(phi_i) d/dt phi_i= omega + gamma*\sum_{j is neighbor of i} sin[2*(phi_j-phi_i)] + sigma*xi_i with independent Gaussian white noise xi_i. i and j are considered to be neighbors if their distance is less than R. Parameters: sigma=sqrt(2), R=1, v=1, simulation box size: Lx=Ly=sqrt(N/10), N, gamma, omega are given in the data base. Periodic boundary conditions are used. Euler-Maruyama scheme was used to integrate the equations of motion.
description: The author acknowledges funding through a 'María Zambrano' postdoctoral grant at University of Barcelona financed by the Spanish Ministerio de Universidades and the European Union (Next Generation EU/PRTR). The author thanks Universitätsrechenzentrum Greifswald for supporting this work by providing computational resources.
DOI: 10.6084/m9.figshare.22060895.v1
title: EID2_organism_locations_raw_2022.csv

description: EID2_location_interactions_raw_2022.csv contains organism-location interactions extracted from the Enhanced Infectious Diseases Database - EID2 (https://eid2.liverpool.ac.uk/). For full description of EID2 please refer to: https://www.nature.com/articles/sdata20154. <br> All interactions im this file are supported by one genetic sequence or 4 or more publicaitons and is structured as follows: <br> 1. organism: name of the organism (species, subspecies or lower rank). 2. organismID: EID2 ID 3. organismTaxID: NCBI taxid 4. rank: the rank of the organism (e.g. species, subspecies, etc). 5. category: the taxonomic classification of the organism (e.g., bacteria, virus, etc.) 6. continent: continent name 7. country: country name 8. region: name of the principal administrative division if known (blank otherwise). 9. sequencesNo: Total number of nucleotide sequences supporting the interaction. 10. papersNo: Total number of publications supporting the interaction.
DOI: 10.6084/m9.figshare.22060895
title: EID2_organism_locations_raw_2022.csv

description: EID2_location_interactions_raw_2022.csv contains organism-location interactions extracted from the Enhanced Infectious Diseases Database - EID2 (https://eid2.liverpool.ac.uk/). For full description of EID2 please refer to: https://www.nature.com/articles/sdata20154. <br> All interactions im this file are supported by one genetic sequence or 4 or more publicaitons and is structured as follows: <br> 1. organism: name of the organism (species, subspecies or lower rank). 2. organismID: EID2 ID 3. organismTaxID: NCBI taxid 4. rank: the rank of the organism (e.g. species, subspecies, etc). 5. category: the taxonomic classification of the organism (e.g., bacteria, virus, etc.) 6. continent: continent name 7. country: country name 8. region: name of the principal administrative division if known (blank otherwise). 9. sequencesNo: Total number of nucleotide sequences supporting the interaction. 10. papersNo: Total number of publications supporting the interaction.
DOI: 10.5281/zenodo.7615175
title: Different contribution of monocyte- and platelet-derived mi-crovesicles to endothelial behavior

description: Several contributions of circulating microvesicles (MVs) to the endothelial dysfunction have been reported in the past; a head-to-head comparison of platelet- and monocyte–derived MVs has however never been performed. To this aim, we assessed the involvement of these MVs in vessel damage related processes -i.e. oxidative stress, inflammation, leukocyte-endothelial adhesion. Platelets and monocytes isolated from healthy subjects (HS, n=15) were stimulated with TRAP-6 and LPS to release MVs that were added to human vascular endothelial cell (hECV) culture to evaluate superoxide anion production, inflammatory markers (IL-6, TNF<em>α</em>, NF-κB mRNA expression) and hECV adhesiveness. The effects of the MVs-induced from HS were compared to those induced by MVs spontaneously released from cells of patients with ST-segment elevation myocardial infarction (STEMI, n=7). MVs released by HS-activated cells triggered a 3 fold increase oxidative burst in a concentration-dependent manner. Only MVs released from monocytes doubled IL-6, TNF<em>α</em>, and NF-κB mRNA expression and monocyte-endothelial adhesion. Interestingly, the effects of the MVs isolated from STEMI-monocytes were not superimposable to previous ones except for adhesion to hECV. Conversely, MVs released from STEMI-platelets sustained both redox state and inflammatory phenotype. These data provide evidence that MVs released from activated and/or pathologic platelets and monocytes differently affect endothelial behavior, highlighting platelet-MVs as causative factors of impaired endothelial function in the acute phase of STEMI.
DOI: 10.5281/zenodo.7615174
title: Different contribution of monocyte- and platelet-derived mi-crovesicles to endothelial behavior

description: Several contributions of circulating microvesicles (MVs) to the endothelial dysfunction have been reported in the past; a head-to-head comparison of platelet- and monocyte–derived MVs has however never been performed. To this aim, we assessed the involvement of these MVs in vessel damage related processes -i.e. oxidative stress, inflammation, leukocyte-endothelial adhesion. Platelets and monocytes isolated from healthy subjects (HS, n=15) were stimulated with TRAP-6 and LPS to release MVs that were added to human vascular endothelial cell (hECV) culture to evaluate superoxide anion production, inflammatory markers (IL-6, TNF<em>α</em>, NF-κB mRNA expression) and hECV adhesiveness. The effects of the MVs-induced from HS were compared to those induced by MVs spontaneously released from cells of patients with ST-segment elevation myocardial infarction (STEMI, n=7). MVs released by HS-activated cells triggered a 3 fold increase oxidative burst in a concentration-dependent manner. Only MVs released from monocytes doubled IL-6, TNF<em>α</em>, and NF-κB mRNA expression and monocyte-endothelial adhesion. Interestingly, the effects of the MVs isolated from STEMI-monocytes were not superimposable to previous ones except for adhesion to hECV. Conversely, MVs released from STEMI-platelets sustained both redox state and inflammatory phenotype. These data provide evidence that MVs released from activated and/or pathologic platelets and monocytes differently affect endothelial behavior, highlighting platelet-MVs as causative factors of impaired endothelial function in the acute phase of STEMI.
DOI: 10.7795/720.20230131
title: Dataset of experimentally determined differential scattering coefficients for nickel

description: This data set contains the experimental results of differential scattering coefficients for nickel as determined in the publication "Experimental determination of differential scattering coefficients for nickel by means of linearly polarized X-ray radiation". It contains the following data: - "rayleigh.csv": Differential Rayleigh scattering coefficients for nickel. - "compton.csv": Differential Compton scattering coefficients for nickel. Both files contain the following variables: θ = polar scattering angle, in degrees; u_θ = its experimental uncertainty, in degrees; ϕ = the azimuthal scattering angle, in degrees; u_ϕ = its experimental uncertainty, in degrees; σ_Ω = the differential scattering coefficient, in cm<sup>2</sup>·g<sup>-1</sup>·sr<sup>-1</sup>; u_{σ_Ω} = its experimental uncertainty, in cm<sup>2</sup>·g<sup>-1</sup>·sr<sup>-1</sup>. All experimental values were derived based on measurements with linearly polarized and monochromatized synchrotron radiation.
description: This work was supported by the European Partnership on Metrology, co-financed from the European Union's Horizon Europe Research and Innovation Programme and by the Participating States
DOI: 10.5281/zenodo.7438429
title: Multi-Year datasets of groundwater level and surface water budget in a Central Mediterranean site (supplementary materials)

description: Five years (2017-2022) of data gathered in a measurement site equipped with a micrometeorological station and two monitoring wells (named FW and BW) are here provided in three datases (text files). The first one (S1) regards water-table depths. The columns represent the following items: date (gg/mm/yy); water-table depth measured in FW (m); water-table depth measured in BW (m). Two datasets (S2, S3) regard surface water budget of monthly and daily data, respectively. The columns represent the following items: date (Julian day or fraction of year representing the end of each month); precipitation (daily/monthly cumulative, m); real evapotranspiration (daily/monthly cumulative, m); soil moisture 2 cm (beginning of the day/month, m3/m3); soil moisture 2 cm (end of the day/month, m3/m3); soil moisture 35 cm (beginning of the day/month, m3/m3); soil moisture 35 cm (end of the day/month, m3/m3); estimated infiltration (daily/monthly cumulative, m); percentage of validated data (daily/monthly cumulative); corrected real evapotranspiration (daily/monthly cumulative corrected by percentage of lacking data, m); corrected estimated infiltration (daily/monthly cumulative corrected by percentage of lacking data, m).
description: The datasets are described in detail in a manuscript submitted to Data (Basel). As of January 10, 2023, the manuscript is available at preprints.org.
DOI: 10.5281/zenodo.7572140
title: Datasets of groundwater level and surface water budget in a central Mediterranean site (June 21, 2017 - October 1, 2022)

description: The datasets contain data of groundwater levels and surface water budget measured in the Salento University Campus ‘Ecotekne’, in Lecce province, Italy (40°20’ N, 18°06’ E) between June 2017 and October 2022. The groundwater data are obtained from two historic wells (FW and BW) hand dug in the Miocene karst Aquifer of Central-Eastern Salento. They are close (few hundreds of meters) to the micrometeorological station of the CNR-ISAC (National Research Council Institute for Atmospheric Science and Climate), that provided the surface water budget data.
description: The datasets are described in detail in a manuscript submitted to Data (Basel). As of January 10, 2023, the manuscript is available at preprints.org.
DOI: 10.5281/zenodo.7438428
title: Datasets of groundwater level and surface water budget in a central Mediterranean site (June 21, 2017 - October 1, 2022)

description: The datasets contain data of groundwater levels and surface water budget measured in the Salento University Campus ‘Ecotekne’, in Lecce province, Italy (40°20’ N, 18°06’ E) between June 2017 and October 2022. The groundwater data are obtained from two historic wells (FW and BW) hand dug in the Miocene karst Aquifer of Central-Eastern Salento. They are close (few hundreds of meters) to the micrometeorological station of the CNR-ISAC (National Research Council Institute for Atmospheric Science and Climate), that provided the surface water budget data.
description: The datasets are described in detail in a manuscript submitted to Data (Basel). As of January 10, 2023, the manuscript is available at preprints.org.
DOI: 10.6084/m9.figshare.22061006
title: MOTEMO-OUTDOOR Dataset

description: This is the dataset from the study "MOTEMO-OUTDOOR: ensuring learning and health security during the COVID-19 pandemic through outdoor and online environments in higher education". A full text of this article can be found at https://www.researchgate.net/publication/368387609_MOTEMO-OUTDOOR_ensuring_learning_and_health_security_during_the_COVID-19_pandemic_through_outdoor_and_online_environments_in_higher_education
DOI: 10.21233/pn5n-9s49
title: Ellewoutsdijk II pollen dataset

description: Raw data for the Ellewoutsdijk II pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.21788915
title: Direct determination of oligomeric organization of integral membrane proteins and lipids from intact customizable bilayer

description: Native mass spectrometry data sets of different membrane proteins.