cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.2rf10/2
title: Calb_mbp1_C6_30

description: The data results of the RNA-seq for the sample Calb_mbp1_C6_30
DOI: 10.5061/dryad.2rf10/3
title: Delta_swi4_C6_0

description: The data results of the RNA-seq for the sample Delta_swi4_C6_0
DOI: 10.5061/dryad.2v00t/77
title: MIDORI_LONGEST_1.1_A6_SPINGO.fasta
DOI: 10.5061/dryad.2v00t/79
title: MIDORI_LONGEST_1.1_COI_SPINGO.fasta
DOI: 10.5061/dryad.2v00t/80
title: MIDORI_LONGEST_1.1_COII_SPINGO.fasta
DOI: 10.5061/dryad.2v00t/81
title: MIDORI_LONGEST_1.1_COIII_SPINGO.fasta
DOI: 10.5061/dryad.2v00t/82
title: MIDORI_LONGEST_1.1_Cytb_SPINGO.fasta
DOI: 10.5061/dryad.2v00t/83
title: MIDORI_LONGEST_1.1_lrRNA_SPINGO.fasta
DOI: 10.5061/dryad.2v00t/84
title: MIDORI_LONGEST_1.1_ND1_SPINGO.fasta
DOI: 10.5061/dryad.2v00t/85
title: MIDORI_LONGEST_1.1_ND2_SPINGO.fasta
DOI: 10.5061/dryad.2v00t/86
title: MIDORI_LONGEST_1.1_ND3_SPINGO.fasta
DOI: 10.5061/dryad.2vt32/1
title: Raw Data

description: This file contains the raw data used for generating all results for the manuscript.  There are 6 sheets:  Morphology contains the morphometric data for the hind limb and muscles for each individual; EMGdata contains all EMG variables used for analyses; HindlimbAngles contains all kinematic data of hind limb joint angles; HindlimbVelocities contains all kinematic data of hind limb joint angular velocities; ForceData contains values of potential force calculated for bursts and strides for each individual; and Force-LengthCurves contains the twitch force-length curves for the gastrocnemius muscles of each individual.
DOI: 10.5061/dryad.3t4g7/1
title: Phenotype data from nodule assays

description: Data on leaf number, length of the longest branch, root length, and total number of nodules produced by plants grown to assay effects of mutations in candidate genes.
DOI: 10.5061/dryad.43b1t/1
title: Dispersal information

description: Dispersal information for the 4339 plant species. Species are classified as possessing or lacking a long-distance dispersal strategy.
DOI: 10.5061/dryad.5c1tj/4
title: Supplemental simulation output

description: The output from the various runs of the simulation model described in the supplement are in this compressed folder.
DOI: 10.5061/dryad.5c1tj/5
title: Variant Call File with inferred maternal alleles

description: This is a file containing the original genotypes and the inferred maternal alleles. The maternal alleles were generated from the Stacks Variant Call File output (archived here as Variant Call File) using the program infer_mat_vcf. This file was generated by merge_vcfs.R.
DOI: 10.5061/dryad.5p67b/1
title: datasheet for plot-level measurements

description: Data file containing contrast coding of the experimental treatments, trait metrics of the recipient communities, resource measurements and principal component of the microbial communities of all plots and abundance of the colonising weed species. The file also contains a meta data sheet for further information.
DOI: 10.5061/dryad.5p67b/2
title: R code for all the calculations, analyses and figures

description: R code to run all the calculations, analyses and figures using the datasheet provided
DOI: 10.5061/dryad.63rb4/1
title: Cytb1 African wolf
DOI: 10.5061/dryad.63rb4/2
title: 12S African wolf

description: Mitochondiral sequence fragment of 12S gene
DOI: 10.5061/dryad.72k67.1
title: Data from: Asymmetric competition impacts evolutionary rescue in a changing environment
DOI: 10.5061/dryad.72k67.2/10.2
title: Evolving Communities Two Species Raw Data (Part 6b - Leading Species Extinction Extra Simulations - High Mutation Rate)

description: WARNING: ~2.17 GB when expanded. Contains all of the raw simulations data for the extra simulations run to explore leading species extinction in the manuscript "Asymmetric Competition Impacts Evolutionary Rescue in a Changing Environment".
DOI: 10.5061/dryad.72k67.2/3.2
title: Head Start or Population Size Raw Simulation Data

description: WARNING: ~ 528 MB when expanded. Contains all raw simulation data for the head-start vs population size simulations with symmetric resource distribution and competition from the manuscript "Asymmetric Competition Impacts Evolutionary Rescue in a Changing Environment".
DOI: 10.5061/dryad.72k67.2/6.2
title: Evolving Communities Two Species Raw Simulation Data (Part 4 - Asymmetric Resources & Large Mutation Size)

description: WARNING: ~3.3 GB when expanded. Contains all of the raw simulations data for the two-species simulations with large mutation size and an asymmetric resource distribution from the manuscript "Asymmetric Competition Impacts Evolutionary Rescue in a Changing Environment".
DOI: 10.5061/dryad.72k67.2/7.2
title: Evolving Communities Two Species Example Simulation File (For Use With Supplementary Mathematica Package)

description: This file contains all data files necessary to use the Supplementary Mathematica Package available in the Electronic Supplementary Material through Proceedings B.
DOI: 10.5061/dryad.72k67.2/8.2
title: Evolving Communities Two Species Raw Data (Part 5 - Leading Species Extinction Extra Simulations - Large Mutation Size)

description: WARNING: ~622.1 MB when expanded. Contains all of the raw simulations data for the extra simulations run to explore leading species extinction with a large mutational effect size in the manuscript "Asymmetric Competition Impacts Evolutionary Rescue in a Changing
Environment".
DOI: 10.5061/dryad.72k67.2/9.2
title: Evolving Communities Two Species Raw Data (Part 6a - Leading Species Extinction Extra Simulations - High Mutation Rate)

description: WARNING: ~4.83 GB when expanded. Contains raw simulations data for the extra simulations run to explore leading species extinction with a high mutation rate and a slow environmental change in the manuscript "Asymmetric Competition Impacts Evolutionary Rescue in a Changing Environment".
DOI: 10.5061/dryad.777bn/1
title: Borneo Rainforest Lodge moth samples 1998

description: Moth samples collected at Borneo Rain forest Lodge 1997-1998
DOI: 10.5061/dryad.777bn/2
title: Halong Moth samples 1994 trap one and two

description: Moth samples collected in Halong, Malaysia 1993-94
DOI: 10.5061/dryad.777bn/3
title: Genting Tea Estate moth samples 1980

description: Moth samples collected at Genting Tea Estate, Malaysia 1979-80
DOI: 10.5061/dryad.777bn/4
title: Genting Tea Estate moth samples 2000

description: Moth samples collected at Genting Tea Estate, Malaysia 2000-01
DOI: 10.5061/dryad.7v1m1/3
title: Snowshoe hare gene level abundance estimations from RSEM

description: This tar file contains gene level results for 15 snowshoe hare skin samples. More information in the README file.
DOI: 10.5061/dryad.7v1m1/4
title: Snowshoe hare isoform level abundance estimations from RSEM

description: This tar file contains isoform level results for 15 snowshoe hare skin samples. More information in the README file.
DOI: 10.5061/dryad.88pv1/1
title: R_data

description: Rdata files containing spike train data from MT neurons in rhesus monkeys under single or multiple random dot pattern stimuli
DOI: 10.5061/dryad.88pv1/2
title: code

description: Provides the code for data fitting and for producing the figures in the paper.
DOI: 10.5061/dryad.88pv1/3
title: model_fitting

description: Provides the output from the data fitting. Used to produce the figures.
DOI: 10.5061/dryad.9k5p0/1
title: Character matrix for Analysis 1

description: This matrix is used for Analysis 1: morphological matrix of extant and fossil Zeiformes. It is adapted from the matrix of: Tyler, J.C. & Santini, F. (2005) A phylogeny of the fossil and extant zeiform-like fishes, Upper Cretaceous to Recent, with comments on the putative zeomorph clade (Acanthomorpha). Zoologica Scripta 34, 157–175.
DOI: 10.5061/dryad.9nv1k/1
title: Dose-time test

description: Mean length of C. aspersum’s diverticulum over time when four doses of love-dart mucus of the species E. vermiculata and one dose of saline solution were applied.
DOI: 10.5061/dryad.bq0rm/1
title: Database of the study
DOI: 10.5061/dryad.g4k83/1
title: MCC phylogeny trimmed to data used in comparative analyses

description: MCC phylogeny from Burns et al. (2014). The tree has been trimmed to include the species used in comparative analyses.  Citation: Burns, K. J., A. J. Shultz, P. O. Title, N. A. Mason, F. K. Barker, J. Klicka, S. M. Lanyon, and I. J. Lovette. 2014. Phylogenetics and diversification of tanagers (Passeriformes: Thraupidae), the largest radiation of Neotropical songbirds. MPE 75:41–77.
DOI: 10.5061/dryad.j021s/3
title: Wang_et_al_eLife2016_data_part3

description: Summary

The DRYAD data sets Wang_et_al_eLife2016_data contain neuronal data recorded by two 64-channel silicon probes from CA1 hippocampal regions of rats that were performing a delayed left/right arm alternation task. Some recordings were performed after medial septum inactivation (see Wang et al., Nature Neuroscience 2015 for details).

The data structures include:
• Wave-forms of putative spikes extracted from original raw broadband signals
• LFPs (local field potentials)
• Results of spike sorting
• Information about the animal behavior during the experiment

Data files
Experimental conditions (after medial septum inactivation)
Wang_et_al_eLife2016_data_part3.tar:
A498-20120807-04_BehavElectrDataLFP.mat
A498-20120809-05_BehavElectrDataLFP.mat
A498-20120813-02_BehavElectrDataLFP.mat
A498-20120815-03_BehavElectrDataLFP.mat
A498-20120827-03_BehavElectrDataLFP.mat
DOI: 10.5061/dryad.j021s/4
title: Wang_et_al_eLife2016_data_part4

description: Summary

The DRYAD data sets Wang_et_al_eLife2016_data contain neuronal data recorded by two 64-channel silicon probes from CA1 hippocampal regions of rats that were performing a delayed left/right arm alternation task. Some recordings were performed after medial septum inactivation (see Wang et al., Nature Neuroscience 2015 for details).

The data structures include:
• Wave-forms of putative spikes extracted from original raw broadband signals
• LFPs (local field potentials)
• Results of spike sorting
• Information about the animal behavior during the experiment

Data files
Wang_et_al_eLife2016_data_part4.tar:
A543-20120412-03_BehavElectrDataLFP.mat
A543-20120422-03_BehavElectrDataLFP.mat
A543-20120425-02_BehavElectrDataLFP.mat
A943-20120515-03_BehavElectrDataLFP.mat
A943-20120521-03_BehavElectrDataLFP.mat
A943-20120523-03_BehavElectrDataLFP.mat
A943-20120526-03_BehavElectrDataLFP.mat
DOI: 10.5061/dryad.kp89j/1
title: damselfly abundance and size data

description: Damselfly size data for six species from 87 sites and Damselfly abundance data of six species from 92 sites across North East Scotland
DOI: 10.5061/dryad.mf513/10
title: Maximum parsimony reconstruction of sarcotesta

description: Maximum parsimony reconstruction of sarcotesta (presence vs. absence), implemented in Mesquite
DOI: 10.5061/dryad.mf513/11
title: matK alignment

description: matK multiple sequence alignment
DOI: 10.5061/dryad.mf513/12
title: ndhF alignment

description: ndhF multiple sequence alignment
DOI: 10.5061/dryad.mf513/13
title: psbA-trnH spacer alignment

description: psbA-trnH spacer multiple sequence alignment
DOI: 10.5061/dryad.mf513/14
title: trnL-trnF spacer alignment

description: trnL-trnF spacer multiple sequence alignment
DOI: 10.5061/dryad.mf513/8
title: Maximum parsimony analysis of the four-marker data set

description: Maximum parsimony analysis of the four-marker data set, including bootstrap support values.
DOI: 10.5061/dryad.mf513/9
title: Maximum parsimony reconstruction of aril types

description: Maximum parsimony reconstruction of aril types, implemented in Mesquite
DOI: 10.5061/dryad.mm856/1
title: Chromosomal speciation and phylogenetics of Petrogale

description: This repository contains three directories, containing data, code and workflows for phylogenetic analysis and chromosome mapping of ~2000 exons for Petrogale.
DOI: 10.5061/dryad.mn0tv/1
title: Summary Data

description: This archive contains summarised tables of data from simulation output.
DOI: 10.5061/dryad.mn0tv/2
title: Raw data 1

description: This archive contains raw simulation data.
DOI: 10.5061/dryad.mn0tv/3
title: Raw data 2

description: This archive contains raw simulation data
DOI: 10.5061/dryad.mn0tv/4
title: Raw data 3

description: This archive contains raw simulation data
DOI: 10.5061/dryad.pn974/1
title: Pre-breeding moult data from male purple-crowned fairy-wrens

description: The data file includes pre-breeding moult profiles of male purple-crowned fairy-wrens based on plumage colouration scores collected in the field over a six-year period, as well as life-history-related information for each individual.
DOI: 10.5061/dryad.pn974/2
title: Pre-breeding moult and breeding data from male purple-crowned fairy-wrens

description: The data file includes information on pre-breeding moult and breeding activity of male purple-crowned fairy-wrens collected in the field over a six-year period.
DOI: 10.5061/dryad.pn974/3
title: Pre-breeding moult and social improvement data from male purple-crowned fairy-wrens

description: The data file includes information on within-individual social improvement, aging and associated variation in pre-breeding moult timing in male purple-crowned fairy-wrens, based on data collected in the field over a six-year period.
DOI: 10.5061/dryad.pn974/4
title: Pre-breeding moult and gain of dominance data from male purple-crowned fairy-wrens

description: The data file includes data on individual pre-breeding moult timing and the outcome of competitions for a dominance position in male purple-crowned fairy-wrens, collected in the field over a six-year period.
DOI: 10.5061/dryad.pn974/6
title: Pre-breeding moult and rainfall data in male purple-crowned fairy-wrens

description: The data file includes information on pre-breeding moult completion and rainfall in associated years for male purple-crowned fairy-wrens, collected in the field over an 11-year period.
DOI: 10.5061/dryad.pp837/3
title: Supplemental_references

description: Supplemental References
DOI: 10.5061/dryad.pp837/4
title: Supplemental Figures 1-9
DOI: 10.5061/dryad.q14n6/1
title: DATA FILES for How are coastal benthos fed

description: This zip file contains four data sets relating to: (1) water column measurements of nutrient concentrations and radionuclide activities; (2) Dreissenid (quagga) mussel population density; (3) oxygen consumption and phosphorus excretion by mussels in a benthic chamber; and (4) shore normal water currents.Each data set is presented in three tables (A, B, C): table A describes the metadata, table B describes the data variables and units, and table C contains the data itself.
DOI: 10.5061/dryad.qb562/1
title: CC_GroupSplit_BiologyLetters

description: This is the data from a playback experiment on meerkats which aimed at splitting a group by playing back close calls.
DOI: 10.5061/dryad.r7989/17
title: Phrynos_BEAST_368_MedianHeights

description: BEAST MCC tree based on 368 haplotypes (including duplicates). Node heights annotated using median heights.
DOI: 10.5061/dryad.r7989/19
title: RAxML_bipartitions_368

description: ML tree from RAxML analysis of 368 sequences (including duplicates). Nodes annotated with bootstrap proportions.
DOI: 10.5061/dryad.t2q53/1
title: Supplementary Material

description: This Supplementary Material contains a large set of figures that depict the results of all analyses described in the paper. There are three sets of results: one using data from all subjects (N=823), and one for each of the two MRI sequence protocols with the largest number of subjects (N=196 and N=460). See the paper for the complete details. After opening the .tar file, locate and open the "index.html" in a web browser to navigate the figures.
DOI: 10.5061/dryad.t7882/2
title: HIV and malaria co-infection and immuno-hematological profiles of patients attending IDH
DOI: 10.5061/dryad.vt68r/1
title: Long-term monitoring data of benthic stream invertebrate communities

description: Data includes annual monitoring data of benthic stream invertebrates collected from 23 near-pristine streams in northern Finland. Sampling was conducted during 14 consecutive years (2000 to 2013), always by the same field crew. A 2-min kick-net sampling was used. Samples were preserved in the field and later processed in the laboratory. All individuals were sorted, counted and identified to the lowest feasible level. Data in repository presents original abundance data for observed taxa (in alphabetical order) in each year at each study site. Environmental data is presented in related Scientic Reports paper.
DOI: 10.5061/dryad.vv53d/1
title: Polyguanine genotyping data

description: This archive contains polyguanine genotyping data, distance matrices and phylogenetic trees.
DOI: 10.5061/dryad.05d0q/1
title: experimental result data file from intertidal area

description: environmental and macrofaunal data collected in the field together with functional diversity indices calculated using dbFD in R
DOI: 10.5061/dryad.16830/1
title: Pringle&Moreau_Data&Code

description: Code, OTU tables, taxonomy, and FASTA sequences associated to the paper.
DOI: 10.5061/dryad.1gk2p/1
title: RockDove.HPG.v1.0.3.gff3

description: Annotation file for assembly
DOI: 10.5061/dryad.1gk2p/2
title: RockDove.HPG.v1.0.3.fasta

description: Transcriptome assembly file
DOI: 10.5061/dryad.2j125/1
title: Wolf location data

description: GPS location data for the 6 wolves analysed in the paper. First column contains wolf IDs. Second and third columns contain observed easting and northing coordinates. Fourth and fifth column contain date and time associated with each location.
DOI: 10.5061/dryad.2kp51/1
title: Seaweed complexity and meso-invertebrates

description: Complexity of individual seaweed species. Count and species richness of associated meso-invertebrates
DOI: 10.5061/dryad.2kp51/2
title: Percent Cover Data

description: Percent cover data for each species
DOI: 10.5061/dryad.2rf10/10
title: RES2_BD_C6_30

description: The RNA-seq data results for the sample RES2_BD_C6_30
DOI: 10.5061/dryad.2rf10/11
title: WT_C6_0

description: The RNA seq data results for the sample WT_C6_0
DOI: 10.5061/dryad.2rf10/4
title: Delta_swi4_C6_30

description: The data results for RNA-seq for the sample Delta_swi4_C6_30
DOI: 10.5061/dryad.2rf10/5
title: Klac_mbp1_C6_0

description: The RNA-seq data results for the sample  Klac_mbp1_C6_0
DOI: 10.5061/dryad.2rf10/6
title: Klac_mbp1_C6_30

description: The RNA-seq data results for the sample Klac_mbp1_C6_30
DOI: 10.5061/dryad.2rf10/7
title: Ncra_BD_C6_0

description: The RNA-seq data results for the sample Ncra_BD_C6_0
DOI: 10.5061/dryad.2rf10/8
title: Ncra_BD_C6_30

description: The RNA-seq data results for the sample Ncra_BD_C6_30
DOI: 10.5061/dryad.2rf10/9
title: RES2_BD_C6_0

description: The RNA-seq data results for the sample RES2_BD_C6_0
DOI: 10.5061/dryad.2v00t/87
title: MIDORI_LONGEST_1.1_ND4_SPINGO.fasta
DOI: 10.5061/dryad.2v00t/88
title: MIDORI_LONGEST_1.1_ND4L_SPINGO.fasta
DOI: 10.5061/dryad.2v00t/89
title: MIDORI_LONGEST_1.1_ND5_SPINGO.fasta
DOI: 10.5061/dryad.2v00t/90
title: MIDORI_LONGEST_1.1_ND6_SPINGO.fasta
DOI: 10.5061/dryad.2v00t/91
title: MIDORI_LONGEST_1.1_srRNA_SPINGO.fasta
DOI: 10.5061/dryad.2v00t/92
title: MIDORI_UNIQUE_1.1_A6_RDP.fasta
DOI: 10.5061/dryad.2v00t/93
title: MIDORI_UNIQUE_1.1_A8_RDP.fasta
DOI: 10.5061/dryad.33863/1
title: Microsatellite genotypes Zosterops hybrid zone Dryad

description: Microsatellite genotype data for 116 Zosterops individuals sampled across a hybrid zone in central South Africa. "sample" refers to the sample name of each individual and "population" refers to the location of sampling (see manuscript for exact location details). The remaining columns (i.e. Zse 16, Zse19 etc) refer to the names microsatellite markers genotyped
DOI: 10.5061/dryad.33863/2
title: Morphometric data Zosterops hybrid zone dryad

description: Morphometric data set of Zosterops individuals sampled across a hybrid zone in central South Africa. Individual specimen numbers and sampling locality are provided. Five standard avian measures were taken (mass, wing-, tarsus-, bill- and tail-length. Four measures of plumage were taken, the percentage underpart colouration of yellow, white, grey and cinnamon. Colour measures were obtained from photographs of birds taken in the field or of prepared museum specimens.
DOI: 10.5061/dryad.364b3/1
title: Microsatellite data

description: Microsatellite data of Ch. montanus and Ch. parallelus used for hybrid detection and calculation of genetic parameters. DNA was extracted using the DNeasy Blood & Tissue Kit (Qiagen). All individuals were genotyped at ten polymorphic microsatellite loci. Fragment lengths of PCR products were determined on a MEGABACE1000 automated sequencer (GE Healthcare) and scored with Fragment Profiler 1.2 (Amersham Biosciences).
DOI: 10.5061/dryad.5p251/1
title: Figure 1 data

description: Data underlying figure 1 including for each individual female (femaleID), the year in which it was observed, its API score upon departure from Vesterålen (APIdepart), the number of young it was observed with during the following autumn (#young) and the average percentage of juveniles in the population in that specific year of observation (PercJuvInPop).
DOI: 10.5061/dryad.5p251/2
title: Figure 2 data

description: Data underlying figure 2, including the average, standard deviation and sample size of the Nitrogen isotope ratios (dN_mean, dN_SD and dN_n, respectively) of three different tissues (item). The data file also contains the year in which the samples were collected as well as the site (where_whom).
DOI: 10.5061/dryad.5p251/3
title: Figure 3 data

description: Data underlying the two panels in Figure 3. The nitrogen isotope ratio (dN) of  both yolk and albumen (item) in eggs is provided. For each egg the year of collection, the nest from which it was collected (nest) and its identity within the nest (egg; coded A-E, the coding not necessarily reflecting laying order) are provided.
DOI: 10.5061/dryad.5r0q8/1
title: DOWN_IRRVM

description: Downwelling irradiance measurements for all lakes and depths.
DOI: 10.5061/dryad.71q1n/1
title: Data set 1

description: Data on tree individuals present in 1912, re-measured in 1953, 1976, 1988 and 2013 in Area 1; Data set 1.
DOI: 10.5061/dryad.71q1n/2
title: Data set 2

description: Data on tree individual measured in 1912, 1967, 1988, 2013 in Area 2; Data set 2.
DOI: 10.5061/dryad.71q1n/3
title: Matlab code

description: Matlab code for population matrix models based on Data 2
DOI: 10.5061/dryad.71q1n/4
title: Read me

description: Description of columns in the data files
DOI: 10.5061/dryad.74f3b/1
title: Plant productivity in Inner Mongolia grassland

description: Our data were collected from a 10-year manipulative experiment which simulated nitrogen deposition and water addition in field.
DOI: 10.5061/dryad.777bn/6
title: GTE Lepidoptera List as of 2011

description: Checklist of Lepidoptera collected at Genting Tea Estate between 1975-2011
DOI: 10.5061/dryad.777bn/7
title: GTE Lepidoptera List_10-2-17

description: Checklist of Lepidoptera collected at Genting Tea Estate between 1975-2017
DOI: 10.5061/dryad.7c09m/1
title: Data for Van Buskirk (2017, Evolution)

description: Two sheets in an Excel file: one contains data from the mesocosm experiment and the other contains data from the field experiment. Information on variables is given at the top of each sheet.
DOI: 10.5061/dryad.7d80n/1
title: sealiondatafinal1newSNA

description: Individual foraging information for California Sea lions at Bonneville
DOI: 10.5061/dryad.7d80n/2
title: network10

description: Association Matrix for Sea lions hauled out in Astoria, Oregon
DOI: 10.5061/dryad.7j270/1
title: Data for Experiment 1 of Magid, Sarkol and Mesoudi (2017)

description: Data for Experiment 1 of Magid, Sarkol and Mesoudi (2017) Experimental priming of independent and interdependent activity does not affect culturally-variable psychological processes. Royal Society Open Science. See README file for variable descriptions.