cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.m48tr
title: Data from: Heterozygosity is linked to the costs of immunity in nestling great tits (Parus major)

description: There is growing evidence that heterozygosity–fitness correlations (HFCs)
 are more pronounced under harsh conditions. Empirical evidence suggests a
 mediating effect of parasite infestation on the occurrence of HFCs.
 Parasites have the potential to mediate HFCs not only by generally causing
 high stress levels but also by inducing resource allocation tradeoffs
 between the necessary investments in immunity and other costly functions.
 To investigate the relative importance of these two mechanisms, we
 manipulated growth conditions of great tit nestlings by brood size
 manipulation, which modifies nestling competition, and simultaneously
 infested broods with ectoparasites. We investigated under which treatment
 conditions HFCs arise and, second, whether heterozygosity is linked to
 tradeoff decisions between immunity and growth. We classified
 microsatellites as neutral or presumed functional and analyzed these
 effects separately. Neutral heterozygosity was positively related to the
 immune response to a novel antigen in parasite-free nests, but not in
 infested nests. For nestlings with lower heterozygosity levels, the
 investments in immunity under parasite pressure came at the expenses of
 reduced feather growth, survival, and female body condition. Functional
 heterozygosity was negatively related to nestling immune response
 regardless of the growth conditions. These contrasting effects of
 functional and neutral markers might indicate different underlying
 mechanisms causing the HFCs. Our results confirm the importance of
 considering marker functionality in HFC studies and indicate that
 parasites mediate HFCs by influencing the costs of immune defense rather
 than by a general increase in environmental harshness levels.
description: Body measures and
 heterozygosity levelsThis data set includes
 nestling body measures and heterozygosity levels of nestlings and rearing
 parents. Nest_ID: Nest of rearing, Chick_ID: Individual nestling's
 code, Brood_manipul: Brood size manipulation treatment, Infestation: Flea
 infestation, Original_brood: Brood size before manipulation treatment,
 HetHLm(f)_f: Functional heterozygosity of foster male (female),
 HetHLm(f)_n: Neutral heterozygosity of foster male (female), HetHL_f:
 Nestling functional heterozygosity, HetHL_n: Nestling neutral
 heterozygosity, Sex: Nestling sex, Weight_d15: Nestling weight 15 days
 after hatching, Fledged: 1=nestling successfully fledged, 0= nestling
 died, LPS_response: Difference in thickness measure before and after
 LPS-Injection, Rank: Nestling hatching rank, Body_cond: Nestling body
 conditionData_Spilwald_2011.xlsxSingle locus heterozygositySingle locus heterozygosity for all individual nestlings. 0=homozygous, 1=heterozygous.
DOI: 10.5061/dryad.f90c7
title: Data from: Molecular genetics to inform spatial management in benthic invertebrate fisheries: a case study using the Australian greenlip abalone

description: Hierarchical sampling and subsequent microsatellite genotyping of
 &gt;2,300 Haliotis laevigata (greenlip abalone) from 19 locations
 distributed across five biogeographic regions has substantially advanced
 our knowledge of population structure and connectivity in this
 commercially-important species. The study has found key differences in
 stock structure of H. laevigata compared with the sympatric and
 con-generic Haliotis rubra (blacklip abalone) and yielded valuable
 insights into the management of fisheries targeting species characterised
 by spatial structure at small scales (i.e. S-fisheries). As with H. rubra,
 H. laevigata comprise a series of metapopulations with strong
 self-recruitment. However, the spatial extent of H. laevigata
 metapopulations (reefal areas around 30 km2; distances of up to 135 km are
 effective barriers to larval dispersal) was substantially greater than
 that identified for H. rubra (Miller et al. 2009). Differences in the
 dynamics and scale of population processes, even between con-generic
 haliotids as made evident in this study, imply that for S-fisheries, it is
 difficult to generalise about the potential consequences of life history
 commonalities. Consequently, species-specific management reflective of the
 population structure of the target species remains particularly important.
 This will likely require integration of information about stock structure
 and connectivity with data on life history and population dynamics in
 order to determine the necessary input (e.g. number of fishers, fishing
 effort) and output (e.g. Minimum Legal Size, Total Allowable Catch)
 controls to underpin their sustainable management.
description: Haliotis laevigata
 microsatellite data SE AustraliaThe file contains
 15-locus microsatellite genotypes from greenlip abalone (Haliotis
 laevigata) sampled across SE Australia. Alleles are based on fragment
 length, and genotypes are provided as two columns for each locus (one
 column for each allele). Data are supplied in three spreadsheets;
 genotypes of adults, genotypes of juveniles and lat/long of collection
 sites.
DOI: 10.5061/dryad.9124
title: Data from: Time dependency of molecular evolutionary rates? Yes and no

description: Some previous studies have suggested that rates of evolution inferred
 using molecular sequences vary substantially depending on the time frame
 over which they are measured, whereas a number of other studies have
 argued against this proposition. We examined this issue by separating
 positions of primate mitochondrial genomes that are under different levels
 of selection constraints. Our results revealed an order of magnitude
 variation in the evolutionary rates at constrained sites (including
 nonsynonymous sites, D-loop, and RNA) and virtually an identical rate of
 evolution at synonymous sites, independent of the timescales over which
 they were estimated. Although the evolutionary rate at nonsynonymous sites
 obtained using the European (H1 haplogroup) mitogenomes is 9–15 times
 higher than that estimated using the human–chimpanzee pair, in contrast,
 the rates at synonymous sites are similar between these comparisons. We
 also show that the ratio of divergence at nonsynonymous to synonymous
 sites estimated using intra- and interspecific comparisons vary up to nine
 times, which corroborates our results independent of calibration times.
description: supplementary_info_revisedSupplementary tables and figures
DOI: 10.5061/dryad.kr4031f
title: Data from: Extreme insolation: climatic variation shapes the evolution of thermal tolerance at multiple scales

description: The climatic variability hypothesis (CVH) is a cornerstone of thermal
 ecology, predicting the evolution of wider organismal thermal tolerance
 ranges in more thermally variable environments. Thermal tolerance ranges
 depend on both upper and lower tolerance limits (critical thermal maxima
 [CTmax] and critical thermal minima [CTmin]), which may show different
 responses to environmental gradients. To delineate the relative effects of
 mean and extreme temperatures on thermal tolerances, we conducted a
 within-latitude comparative test of CVH predictions for army ants
 (Dorylinae) at multiple scales: across elevations, in seasonal versus
 aseasonal forests, and in subterranean versus surface microhabitats.
 Consistent with the CVH, thermally buffered subterranean species had
 narrower thermal tolerance ranges. Both CTmin and CTmax decreased with
 elevation for subterranean species. In contrast, aboveground species
 (those exposed to insolation) showed a decrease in CTmin but no change in
 CTmax across elevations. Furthermore, greater seasonal temperature
 variation in dry forests correlated with increased CTmax but not CTmin.
 These patterns suggest that CTmax and CTmin respond to different abiotic
 selective forces: habitat-specific exposure to extreme insolation
 corresponds to CTmax differences but not to CTmin variation. We predict
 that increasingly frequent heat spikes associated with climate change will
 have habitat-specific physiological consequences for ectothermic animals.
 Models predicting climate change impacts should account for species
 microhabitat uses and within-latitude differences in temperature
 seasonality.
description: CTmaxMaximum critical limit
 data used in analysesCTminMinimum critical limit
 data used in analysesTolerance
 BreadthColony mean thermal
 tolerance breadthsBreadth
 Dryad.csv
DOI: 10.5061/dryad.860kn
title: Data from: Ibobbly mobile health intervention for suicide prevention in Australian Indigenous youth: a pilot randomised controlled trial

description: Objectives: Rates of youth suicide in Australian Indigenous communities
 are four times the national youth average and demand innovative
 interventions. Historical and persistent disadvantage is coupled with
 multiple barriers to help-seeking. Mobile phone applications offer the
 opportunity to deliver therapeutic interventions directly to individuals
 in remote communities.The pilot study aimed to evaluate the effectiveness
 of a self-help mobile app (ibobbly) targeting suicidal ideation,
 depression, psychological distress, and impulsivity among Indigenous youth
 in remote Australia. Setting: Remote and very remote communities in the
 Kimberley region of north Western Australia Participants: Indigenous
 Australians aged 18-35 years. Interventions: 61 participants were
 recruited and randomised to receive either an app (ibobbly) which
 delivered acceptance-based therapy over 6 weeks or were waitlisted for 6
 weeks and then received the app for the following 6 weeks. Primary and
 secondary outcome measures: The primary outcome was the Depressive Symptom
 Inventory – Suicidality Subscale (DSI-SS) to identify the frequency and
 intensity of suicidal ideation in the previous weeks. Secondary outcomes
 were the Patient Health Questionnaire 9 (PHQ-9), the Kessler Psychological
 Distress Scale (K10), and the Barratt Impulsivity Scale (BIS-11). Results:
 Although pre- post-intervention change on the (DSI-SS) was significant in
 the ibobbly arm (t=2•40; df=58•1; p=0•0195), this difference was not
 significant compared to the waitlist arm (t=1•05; df=57•8; p=0•2962).
 However, participants in the ibobbly group showed substantial and
 statistically significant reductions in PHQ-9 and K10 scores compared to
 waitlist. No differences were observed in impulsivity. Waitlist
 participants improved after 6 weeks of app use. Conclusions: Apps for
 suicide prevention reduce distress and depression but do not show
 significant reductions on suicide ideation or impulsivity. A feasible and
 acceptable means of lowering symptoms for mental health disorders in
 remote communities is via appropriately designed self-help apps. Trial
 Registration: Australian New Zealand Clinical Trials Registry (ANZCTR):
 ACTRN12613000104752.
description: Mental Health Outcomes
 Variables for mHealth trialThis file contains the
 means calculated for the ibobbly (intervention) group and the waitlist
 group for four measures. The measures are suicidal ideation (DSI-SS), the
 primary outcome, depression (PHQ9), Psychological Distress (K10), and
 Impulsivity (BIS-II). The analyses and graphs are provided for each
 measure also.Outcome variables
 2016-04-11.xlsibobblyRawDataforDryadThis file contains the raw data collected in interviews on the four measures, DSI-SS, PHQ9, K10, and the BIS-II. There are three time points, baseline, 6 weeks (end of trial for intervention group), and 12 weeks (end of trial for waitlist group).
DOI: 10.5061/dryad.74sh7
title: Data from: Plasticity of thermal tolerance and its relationship with growth rate in juvenile mussels (Mytilus californianus)

description: Complex life cycles characterized by uncertainty at transitions between
 larval/juvenile and adult environments could favor irreversible
 physiological plasticity at such transitions. To assess whether thermal
 tolerance of intertidal mussels (Mytilus californianus) adjusts to
 post-settlement environmental conditions, we collected juveniles from
 their thermally buffered microhabitat from high and low-shore locations at
 cool (wave-exposed) and warm (wave-protected) sites. Juveniles were
 transplanted to unsheltered cages at the two low sites or placed in a
 common garden. Juveniles transplanted to the warm site for one month in
 summer had higher thermal tolerance, regardless of origin site. In
 contrast, common-garden juveniles from all sites had lower tolerance
 indistinguishable from exposed-site transplants. After six months in the
 field plus a common garden period, there was a trend for higher thermal
 tolerance at the protected site, while reduced thermal tolerance at both
 sites indicated seasonal acclimatization. Thermal tolerance and growth
 rate were inversely related after one but not six months; protected-site
 transplants were more tolerant but grew more slowly. In contrast to
 juveniles, adults from low-shore exposed and protected sites retained
 differences in thermal tolerance after common garden treatment in summer.
 Both irreversible and reversible forms of plasticity must be considered in
 organismal responses to changing environments.
description: iButton Temperature
 Logger DataRaw iButton temperature
 logger data for one month and six months reciprocal transplant field
 experiments of juvenile M. californianus at Hopkins Marine Station,
 Pacific Grove, CA, USA. Exposed and protected refer to reciprocal
 transplant wave-exposure sites. Low and high refer to origin shore
 height.Gleason_2018_juvDevPlast_rawiButtonTempData_supplemental_2.6.18.xlsx
DOI: 10.15468/dl.araurd
title: Occurrence Download

description: A dataset containing 316278 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Auckland Museum Botany Collection"
 ]
}

 The dataset includes 316278 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000599-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uccbec
title: Occurrence Download

description: A dataset listing the 203 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-80.83013 7.97965,-80.76016 7.9893,-80.62508 8.03046,-80.57679 8.09426,-80.53456 8.11959,-80.50802 8.18473,-80.49717 8.24385,-80.47304 8.26074,-80.44529 8.28124,-80.43202 8.30778,-80.3898 8.32226,-80.34757 8.31864,-80.33792 8.32347,-80.2764 8.31623,-80.25045 8.3405,-80.18938 8.3405,-80.15356 8.35078,-80.10424 8.37779,-80.05256 8.40656,-80.00382 8.43563,-79.96566 8.46,-79.95685 8.48348,-79.92279 8.50785,-79.85556 8.56892,-79.8421 8.62627,-79.83969 8.66729,-79.78902 8.71675,-79.76972 8.76259,-79.77816 8.85307,-79.83562 8.8852,-79.89736 8.94694,-80.00682 8.86555,-80.08454 8.78767,-80.21314 8.71916,-80.46097 8.60817,-80.59609 8.5563,-80.93146 8.3681,-81.12942 8.35196,-81.27816 8.34635,-81.52794 8.40809,-81.61134 8.42565,-81.76369 8.49228,-82.3278 8.61577,-82.60564 8.65787,-82.81824 8.6516,-82.82307 8.57681,-82.82669 8.51528,-82.85926 8.45014,-82.4918 8.36908,-82.315 8.34786,-81.774 8.17106,-81.56361 8.09064,-81.28614 8.0086,-81.00867 7.98206,-80.89305 7.97276,-80.83013 7.97965))",
 "IucnRedListCategory is one of (VU, EN, CR)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 203 records were derived from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000598-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.8262
title: Data from: Brain size and the expression of pheomelanin-based colour in birds

description: Eumelanin and pheomelanin are the most common vertebrate pigments. They
 generate different colours and are synthesized under different
 physiological conditions. While pheomelanogenesis requires high levels of
 a key intracellular antioxidant (glutathione, GSH), eumelanogenesis is
 inhibited by GSH. This implies that species that present the molecular
 basis to produce large amounts of pheomelanin might be more limited to
 perform other costly processes that generate oxidative stress than species
 that produce eumelanin. Brain development requires large amounts of energy
 and antioxidants during ontogeny, so that large-brained species may be
 constrained in their simultaneous synthesis of large amounts of
 pheomelanin, but not in their synthesis of eumelanin. Here we tested this
 hypothesis in a large dataset of 323 bird species. After controlling for
 the effects of phylogeny, latitude and sexual dichromatism, the proportion
 of pheomelanic plumage colour was strongly negatively related to the
 relative brain mass of species, while no relationship was found for the
 proportion of eumelanic colour. This indicates that the production of
 pheomelanin is a costly process that cannot evolve together with complex
 neural structures and thus with large cognitive capacity. This is the
 first time that the expression of melanic traits is found to correlate
 with another phenotypic character across species.
description: Appendix
 S1Body mass (g), brain
 mass (g), eumelanic and pheomelanic plumage colour score, mean breeding
 latitude (ºN) and sexual dichromatism in melanin-based color (0:
 monochromatic, 1: dichromatic) for the 323 species of birds used in the
 study.Appendix
 S2Phylogenetic hypothesis
 used in the study.
DOI: 10.5061/dryad.47vh3
title: Data from: Environmental gradients predict the genetic population structure of a coral reef fish in the Red Sea

description: The relatively recent fields of terrestrial landscape and marine seascape
 genetics seek to identify the influence of biophysical habitat features on
 the spatial genetic structure of populations or individuals. Over the last
 few years, there has been accumulating evidence for the effect of
 environmental heterogeneity on patterns of gene flow and connectivity in
 marine systems. Here we investigate the population genetic patterns of an
 anemonefish, Amphiprion bicinctus, along the Saudi Arabian coast of the
 Red Sea. We collected nearly one thousand samples from 19 locations,
 spanning approximately 1500 km, and genotyped them at 38 microsatellite
 loci. Patterns of gene flow appeared to follow a stepping-stone model
 along the northern and central Red Sea, which was disrupted by a distinct
 genetic break at a latitude of approximately 19°N. The Red Sea is
 characterized by pronounced environmental gradients along its axis,
 roughly separating the northern and central from the southern basin. Using
 mean chlorophyll-a concentrations as a proxy for this gradient, we ran
 tests of isolation-by-distance (IBD, R2 = 0.52) and
 isolation-by-environment (IBE, R2 = 0.64), as well as combined models
 using partial Mantel tests and multiple matrix regression with
 randomization (MMRR). We found that genetic structure across our sampling
 sites may be best explained by a combined model of IBD and IBE (Mantel: R2
 = 0.71, MMRR: R2 = 0.86). Our results highlight the potential key role of
 environmental patchiness in shaping patterns of gene flow in species with
 pelagic larval dispersal. We support growing calls for the integration of
 biophysical habitat characteristics into future studies of population
 genetic structure.
description: Nanninga_microsatellite
 genotypesThis file includes the
 genotypes of 991 anemonefish, Amphiprion bicinctus, at 38 microsatellite
 loci. Samples were collected along the Saudi Arabian Red Sea coast between
 2009 and 2011. For information on sampling locations please refer to file:
 Nanninga_site information.Nanninga_site
 informationThis file includes
 descriptors of sample sites for Amphiprion bicinctus along the Saudi
 Arabian Red Sea coast, including information on mean chlorophyll-a
 concentrations taken from Raitsos et al. 2013, PLoS
 one).
DOI: 10.5061/dryad.rm607
title: Data from: A new species of logperch endemic to Tennessee (Percidae: Etheostomatinae: Percina)

description: Percina apina, the Tennessee Logperch, is described as a new species
 endemic to Tennessee and distributed in the Duck River system and Whiteoak
 Creek. The earliest collection records for Percina apina date to 1971 and
 the species was identified as Percina burtoni, the Blotchside Logperch. A
 phylogenetic analysis of mitochondrial DNA (mtDNA) published in 2006
 showed that populations identified as Percina burtoni in the Duck River
 system and Whiteoak Creek were a new and undescribed species. In this
 study, we test the hypothesis that Percina burtoni is composed of multiple
 species through analyses of mtDNA, nuclear genetic variation, and
 traditional meristic trait morphology. Our analyses of morphological
 divergence, nuclear genotypes, mtDNA gene trees, and comparisons with
 other sister species pairs of logperches confirm the distinctiveness of
 Percina apina. Morphologically, Percina apina is distinguished from
 Percina burtoni through higher average numbers of lateral line scales
 (93.1 versus 89.9); pored lateral line scales (91.6 versus 88.8); rows of
 transverse scales (38.1 versus 33.6); and scales around the caudal
 peduncle (36.2 versus 33.5). The two species also differ in patterns of
 pigmentation; the lateral blotches in Percina apina are typically wider
 than high, whereas the blotches tend to be higher than wide in Percina
 burtoni. We recommend that future species descriptions of North American
 freshwater fishes leverage available genetic resources and include
 molecular phylogenetic assessments in analyses of taxon distinctiveness.
 In addition, we advocate the deposition of morphological data used in
 species descriptions to online data repositories to ensure that other
 researchers are able to evaluate and modify hypotheses of species
 delimitations.
description: burtoniCOBThe nexus file alignment of the cytochrome b DNA sequences used in the MrBayes analyses. This includes the partical sequence from the 1891 Cumberland River specimen.burtoniCOBnoCUMBThe nexus file alignment of the cytochrome b DNA sequences used in the MrBayes analyses. This DOES NOT include the partical sequence from the 1891 Cumberland River specimen.logperchCOB2axml formatted file used in BEAST 1.8 to estimate time-calibrated phylogeny.P_apina_localitiesSampling localities of specimens of Percina apina used in morphological analyses.P_apina_meristicsMeristic data sampled from specimens of Percina apina.P_burtoni_localitiesSampling localities of specimens of Percina burtoni used in morphological analyses.P_burtoni_meristicMeristic data sampled from specimens of Percina burtoni.Pbur_Prex_8genes_StructureAllele scoring for eight microsatellite loci used in STRUCTURE analysis.
DOI: 10.13140/rg.2.2.25155.87841
title: Aristotle on Refusing Determinism, in Rekh Magazine, 26th January 2026. https://pfisogni.wixsite.com/rekh-magazine/post/aristotle-on-refusing-determinism?fbclid=IwY2xjawPkwmRleHRuA2FlbQIxMQBicmlkETFDMEZiQTlHWXhBWnI1VXpNc3J0YwZhcHBfaWQQMjIyMDM5MTc4ODIwMDg5MgABHuO0-VI6gDEk7VgTu7EJR9wjxYPuxXnL0Rl-PGXKcxcShw7kuGC-_ma5ObAc_aem_uT-pjzPfotB8GZwvdBDaLg