cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.68vs3/1
title: Nightingale’s abundance and co-occurrence status
DOI: 10.5061/dryad.738c1/1
title: Yemen_cholera_Database

description: This file includes data of all admissions for acute watery diarrhea from October 28th, 2016 to February 28th, 2017 in the Cholera Treatment Center in Hodeida city, Yemen.
DOI: 10.5061/dryad.78568/1
title: Sibship_Structures_Females_BANDED_offspring

description: This file includes the sibship structures among all females' banded offspring, given the social pedigree, genetic pedigree, and 'distinct males assumption'.
DOI: 10.5061/dryad.78568/2
title: Sibship_Structures_Females_RECRUITED_offspring

description: This file includes the sibship structures among all females' recruited offspring, given the social pedigree, genetic pedigree, and 'distinct males assumption'.
DOI: 10.5061/dryad.78568/3
title: Sibship_Structures_Males_BANDED_offspring

description: This file includes the sibship structures among all males' banded offspring, given the social and genetic pedigrees.
DOI: 10.5061/dryad.78568/4
title: Sibship_Structures_Males_RECRUITED_offspring

description: This file includes the sibship structures among all males' recruited offspring, given the social and genetic pedigrees.
DOI: 10.5061/dryad.78568/5
title: Relationships_and_Relatedness_All_Possible_Female_Male_Pairs

description: This file contains all possible female-male pairings from 2008-2015, as well as the relationship and relatedness among each pair, as calculated from both a social (ie no polyandry) and genetic (ie including polyandry) pedigree.
DOI: 10.5061/dryad.7hv4c/1
title: RTI files Laevitealliocaris xiaheyanensis CNU-NX1-540c telson details

description: The data set proposes a close-up of distal pleon and telson of Laevitealliocaris xiaheyanensis gen. et sp. nov. documented using reflectance transformation imaging (RTI), which allows a modification of light orientation at will to best see fine anatomical details. Particularly interesting views (reproduced in Fig. 2E–H of the associated paper) are bookmarked in the file, so that the user can access them just by a single click.
DOI: 10.5061/dryad.8153g/46
title: RAxML_mtDNAdataset1_rhinoOut_allPartns_inclHippidion
DOI: 10.5061/dryad.8153g/47
title: RAxML_mtDNAdataset1_rhinoOut_reducedPartns_exclHippidion
DOI: 10.5061/dryad.8153g/48
title: RAxML_mtDNAdataset1_rhinoOut_reducedPartns_inclHippidion
DOI: 10.5061/dryad.8153g/49
title: RAxML_mtDNAdataset2_tapirOut_allPartns_exclHippidion
DOI: 10.5061/dryad.8153g/50
title: RAxML_mtDNAdataset2_tapirOut_allPartns_inclHippidion
DOI: 10.5061/dryad.8153g/51
title: RAxML_mtDNAdataset2_tapirOut_reducedPartns_exclHippidion
DOI: 10.5061/dryad.8153g/52
title: RAxML_mtDNAdataset2_tapirOut_reducedPartns_inclHippidion
DOI: 10.5061/dryad.8153g/53
title: RAxML_mtDNAdataset3_dogOut_allPartns_exclHippidion
DOI: 10.5061/dryad.8153g/54
title: RAxML_mtDNAdataset3_dogOut_allPartns_inclHippidion
DOI: 10.5061/dryad.8153g/55
title: RAxML_mtDNAdataset3_dogOut_reducedPartns_exclHippidion
DOI: 10.5061/dryad.9507b/3
title: Male Offspring Data Only

description: Data for male offspring only, including proportion of chirps led
DOI: 10.5061/dryad.9507b/4
title: Family Level Data

description: Data for each family (egg number, hatchling number, etc.) as well as family in each condition (adult number, adult prop., etc.)
DOI: 10.5061/dryad.9507b/5
title: Parent Leadership Data

description: Highlighted pairs on Sheet1 are those included in the study
DOI: 10.5061/dryad.9507b/6
title: Key for offspring recording names
DOI: 10.5061/dryad.9507b/7
title: Offspring calls

description: Wav files and analyses for offspring call files
DOI: 10.5061/dryad.9507b/8
title: Parent Calls
DOI: 10.5061/dryad.9kv93/1
title: Male-mediated species recognition among African weakly electric fishes

description: Raw data associated with the paper "Male-mediated species recognition among African weakly electric fishes". Information pertaining to species, individual, experiment, and preference behavior.
DOI: 10.5061/dryad.9s1gm/1
title: Vega-Trejo et al Heredity

description: This file contains data for "Maternal-by-environment but not genotype-by-environment interactions in a fish without parental care". Data is separated for females and males. Labels for each data are provided in a separate excel sheet.
DOI: 10.5061/dryad.bh576/1
title: Citation search

description: Contains the search strategy performed in LexisNexis Academic database.
DOI: 10.5061/dryad.bh576/2
title: Citation_data

description: Contains citation search results.
DOI: 10.5061/dryad.bh576/3
title: R_script

description: Contains the script used to generate the correspondence analysis plot.
DOI: 10.5061/dryad.d22g0/1
title: Aligned nexus files for five gene regions; ITS, BT, HSP, cox1 and NADH

description: The zip file containes aligned nexus files and individual gene trees obtained following Bayesian analysis (as described in the manuscript) saved as '.nex. and '.newick'. The sequence names are give as species name, isolate code and genbank accession number.
DOI: 10.5061/dryad.h4953/1
title: Data from reproductive allocation study

description: The data file is twelve columns.  FNEST-a numeric code for the colony. BLOCK-a numeric code for which block the colony is in. YEAR-the year for the data. CARB-code for whether colony received a seed supplement in that year (2) or did not (1). PROTEIN-code for whether a colony received a mealworm supplement (2) or did not (1) during that year.  SIZE- the size of the colony in that summer.  The following six columns are the number (MN, FN), size in gms (MWT, FWT) and variation in size of males and females (MSD, FSD) produced during that year. A 0 for number indicates no reproduction, a . indicates data for that colony not collected during that year.
DOI: 10.5061/dryad.j24r0/1
title: SNP genotypes

description: Genotype data in STRUCTURE format for 3,139 SNPs
DOI: 10.5061/dryad.j24r0/2
title: Reference sequences

description: Fasta file for the reference sequences of the candidate SNPs
DOI: 10.5061/dryad.k9q7h/10
title: 40 mg/kg DEX injection-sIPSC Ctrl.13 Inj.11

description: This is an opj. file which can be opened by origin software.It includes data related to sIPSC on Gluergic neurons from DEX injection and saline injection mice and data processing.
DOI: 10.5061/dryad.k9q7h/11
title: ISI(40 mg/kg DEX injection-GABAergic neuron) Ctrl.11 Inj.11

description: An opj.file including data related to inter-spike intervals on GABAergic neurons from DEX injection and saline injection mice and data processing.
DOI: 10.5061/dryad.k9q7h/12
title: ISI(40 mg/kg DEX injection-Gluergic neuron) Ctrl.19 Inj. 28

description: An opj.file including data related to the inter-spike intervals on Gluergic neurons from DEX injection and saline injection and data processing.
DOI: 10.5061/dryad.k9q7h/13
title: 25 uM DEX washing-on sEPSC 14cells

description: An opj. file including data related to sEPSC on GABAergic neurons before and after DEX washing on and data processing.
DOI: 10.5061/dryad.k9q7h/14
title: 25 uM DEX washing-on-sIPSC 10cells

description: An opj. file including data related to sIPSC on Gluergic neurons before and after DEX washing on and data processing.
DOI: 10.5061/dryad.k9q7h/15
title: ISI(25 uM DEX washing-on-GABAergic neuron）13Cells

description: An opj. file including data related to inter-spike intervals(ISI) on GABAergic neurons before and after DEX washing on and data processing.
DOI: 10.5061/dryad.k9q7h/16
title: ISI（25 uM DEX washing-on-Gluergic neuron）14Cells

description: An opj. file including data related to inter-spike intervals on Gluergic neurons before and after DEX washing on and data processing.
DOI: 10.5061/dryad.k9q7h/8
title: ISI (25 uM DEX washing-on-Gluergic neurons) 14cells

description: This excel includes original data related to the inter-spike intervals recorded on Gluergic neurons(n=14) before and after DEX washing on.
DOI: 10.5061/dryad.k9q7h/9
title: 40 mg/kg DEX injectioin-sEPSC Ctrl.12 Inj.19

description: This is an opj. file which can be opened by origin software.It includes data related to sIPSC on Gluergic neurons from DEX injection and saline injection mice and data processing. Moreover,origin software is used to analyse all data related to our exprements.
DOI: 10.5061/dryad.km24v/2
title: README

description: README file for the submitted alignments, gene trees, and species trees
DOI: 10.5061/dryad.m633f/1
title: Genotype dataset of three traditional horse breeds of Bhutan based on 29 DNA microsatellite loci
DOI: 10.5061/dryad.nh539/1
title: MCC_Cichlidae_phylogeny_treePL_ML

description: Maximum clade credibility tree of Cichlidae used for analyses in the Burress and Tan paper.
DOI: 10.5061/dryad.nh539/2
title: Burress_and_Tan_Supplementary_Materials

description: This file contains seven Supplementary Tables as well as Figure legends for four Supplementary Figures associated with the Burress and Tan paper.
DOI: 10.5061/dryad.nh539/3
title: FIG_S1_delimitation_of_focal_clades

description: Figure S1. Phylogeny of cichlid fishes used in the analyses for the Burress and Tan paper. The clades referred to in the text are delimited by colour (colonization-associated clades in red, non-colonization-associated clades in blue). Bootstrap values are listed at internal nodes.
DOI: 10.5061/dryad.nh539/4
title: FIG_S2_BAMM_sensitivity_to_prior

description: Figure S2. Prior and posterior distributions of the number of rate shifts based on priors of 1, 5, and 10 shifts. Although the distribution of the number of shifts in the posterior is sensitive to the prior, the most probable number of shifts supported by Bayes Factors (used throughout the Burress and Tan paper) is robust to the number of shifts specified in the prior.
DOI: 10.5061/dryad.nh539/5
title: FIG_S3_BAMM_CSS_top9

description: Figure S3. The top-9 rate shift configurations from the 95% credible shift set from BAMM analysis. The frequency (f) of each configuration is listed above each plot. Circles depict the locations of rate shifts. Larger circles depict more probable shifts. The branches are color-coded according to their relative diversification rates. Warm colors depict relatively fast rates whereas cold colors depict relatively slow rates.
DOI: 10.5061/dryad.nh539/6
title: FIG_S4_RTT_clades

description: Figure S4. Rate through time plots (mean ± 95% credible interval) for major clades discussed in the main text of the Burress and Tan paper. Color-codes correspond to those used in Figure 1 of the main text.
DOI: 10.5061/dryad.p30c6/1
title: Nutrient response data for high yield corn in Nebraska

description: The file Nebr HiYieldCornNPKS contains data for 34 site-years of research for high yield corn response to applied nutrients in Nebraska. The mean highest treatment yield was 14.75 Mg ha-1.
DOI: 10.5061/dryad.pd959/1
title: age2SizePars.R

description: Data file used by IdahoIPMFunctions.R
DOI: 10.5061/dryad.pd959/2
title: BaselineParameterSets.Rdata

description: Data file used by SizeQualityFunctionsPlot.R and SizeQualityVarPartition.R
DOI: 10.5061/dryad.pd959/3
title: growPars.csv

description: Data file used by IdahoIPMFunctions.R
DOI: 10.5061/dryad.v0s27/18
title: Supplementary Materials Matrix 3

description: Resulting matrix after the propagation step. The taxon names are based on the VTO, and this matrix is the input for the taxon name reconciliation step.
DOI: 10.5061/dryad.v0s27/19
title: Supplementary Materials Matrix 4

description: Final output matrix of the pipeline. This tab-delimited file was read into Mesquite v3.10 for mapping onto the Teleostei species-level tree (Supplementary Materials File 1).
DOI: 10.5061/dryad.v0s27/20
title: Supplementary Materials Table 1

description: List of 87 publications used in constructing the synthetic supermatrix, including the number of taxa, pectoral and pelvic fin characters, and states. Studies that were specifically curated for the purpose of more fully representing the distribution of pelvic and pectoral fin conditions across teleosts are denoted by an asterisk.
DOI: 10.5061/dryad.v0s27/21
title: Supplementary Materials Table 2

description: Comparison of valid teleost species between FishBase (CoF), and Open Tree.
DOI: 10.5061/dryad.v0s27/22
title: Supplementary Materials Table 3

description: Comparison of teleost families between the Vertebrate Taxonomy Ontology (VTO), Open Tree, and Catalog of Fishes (CoF). Dash indicates family name that is not recognized within a particular source.
DOI: 10.5061/dryad.v0s27/23
title: Supplementary Materials Table 4

description: Statistics for reconciliation between Vertebrate Taxonomy Ontology (VTO) and Open Tree taxa. This file lists the species with data that were mismatched during the reconciliation step, and they are separated based on the reason for the mismatch (due to species being extinct, unconventional naming, etc.).
DOI: 10.5061/dryad.v0s27/24
title: Supplementary Materials Table 5

description: List of VTO teleost families that show pectoral fin absence, pelvic fin absence, or the absence of both paired fins. Families with pelvic fin absence were compared to previously documented families (Nelson 1990), and details given in footnotes.
DOI: 10.5061/dryad.v1d32/1
title: archive

description: Archive containing code and data
DOI: 10.17632/42snjh2rs6.1
title: Data from: Glue protein production can be triggered by steroid hormone signaling independent of the developmental program in Drosophila melanogaster

description: Glue protein production can be triggered by steroid hormone signaling independent of the developmental program in Drosophila melanogaster
DOI: 10.17632/8dsvswkzft.1
title: Supplementary data

description: Phylogenetic tree
DOI: 10.5061/dryad.09j54/3
title: Species_weights

description: The file contains the plot wise abundance estimation of flocking species. Please read the readme file for details.
DOI: 10.5061/dryad.123jm/1
title: Data for Haan, Bakker and Bowers

description: .csv file with data used for Haan, Bakker and Bowers: Hemiparasites can transmit indirect effects from host plants to herbivores, published in Ecology.
DOI: 10.5061/dryad.1h3k8/2
title: Schmidt et al 2017 Experiment 2

description: Plant growth and nodule data from an experiment in which wildtype soybean plants were inoculated with rhizobium strains isolated from long-term agronomic treatments.
DOI: 10.5061/dryad.1h3k8/3
title: Schmidt et al 2017 BNF

description: Isotope data and calculations estimating biological nitrogen fixation.
DOI: 10.5061/dryad.1h3k8/4
title: Schmidt et al 2007 Data analyses

description: SAS code used in the analyses presented in Schmidt et al. 2017.
DOI: 10.5061/dryad.278rt/1
title: Becker et al 2017 JAE

description: study, parasite, host trait, and effect size data used in the phylogenetic meta-analysis
DOI: 10.5061/dryad.278rt/2
title: becker et al 2017_JAE R code

description: R code to obtain a host phylogeny and fit random-effect models for effect size, run model comparisons, and calculate variable importance within each parasite group
DOI: 10.5061/dryad.2j0h3/4
title: multi_samples_occ_post

description: Post-purification detection data from triplicate wells under the multiple samples scenario.
DOI: 10.5061/dryad.2j0h3/5
title: quant_data_pre

description: Pre-purification quantity estimates from triplicate qPCR wells.
DOI: 10.5061/dryad.2j0h3/6
title: quant_data_post

description: Post-purification quantity estimates from triplicate qPCR wells.
DOI: 10.5061/dryad.2vm47/1
title: Figure 2 Raw data

description: Spectral radiance data for the Milky Way recorded under clear skies.
DOI: 10.5061/dryad.3879g/1
title: JAGS code for the bar-tailed godwit population analysis
DOI: 10.5061/dryad.44ck7/2
title: MSRun73_WF15_01_1_Scat_16S_UniqueSequences
DOI: 10.5061/dryad.44ck7/3
title: Petrogale_lateralis_16S
DOI: 10.5061/dryad.44ck7/4
title: Petrogale_lateralis_CR
DOI: 10.5061/dryad.44ck7/5
title: Petrogale_lateralis_CytB
DOI: 10.5061/dryad.4kh60/1
title: Fertilization success, genetic relatedness and mitochondrial lineage estimates from competitive sperm chemotaxis experiment

description: Sheet 1 contains the results of multi-step sperm competition laboratory trials in the presence of egg chemoattractants in the mussel Mytilus galloprovincialis. Columns included are experimental block number, focal male (sperm donor) ID, focal female (egg chemoattractant donor) ID, replicate (two for each focal male-female cross), focal male fertilization success, focal male failures (eggs not fertilized), and total eggs counted. Sheet 2 contains similar data, but with the two replicate fertilization success measures for each focal male-female cross combined into a single measure. This sheet also contains estimates of nuclear genetic relatedness of male-female pairs, and a column specifying whether males and females belong to different (0) or the same (1) phylogenetic mitochondrial lineage.
DOI: 10.5061/dryad.5k54f/1
title: Final OTU/Sample data matrix

description: OTU-table with taxonomic annotation for OTUs and information on sample treatments
DOI: 10.5061/dryad.5k54f/2
title: Representative sequences for all OTUs

description: Unclustered representative sequences for all OTUs
DOI: 10.5061/dryad.5k54f/3
title: FF6_map

description: Barcode and primer mapping file
DOI: 10.5061/dryad.5kg33/1
title: Matrices of concatenated aligned sequences

description: 5 files. Three are partitions of nuclear transcriptomes (primary matrix of 1877 genes; secondary matrices of (MS) loci with species missing and (NL) noncoding loci. The fourth matrix is of the mitochondrial transcriptomes; the fifth is the mix of 16s and ND1 from the transcriptomes, and previous data from Sanger sequencing.
DOI: 10.5061/dryad.5kg33/2
title: NEXUS file of inferred phylogenetic trees

description: Inferred trees from the various analyses and partitions of the transcriptome data.
DOI: 10.5061/dryad.61m9p/3
title: Raw data _Pfmdr1 SNPs_revised 16112017

description: Data on the Pfmdr1 single nucleotide polymorphisms (SNPs) analysis at codons N86Y, Y184F, and D1246Y and impact of AL or ASAQ treatment as a rescue treatment
DOI: 10.5061/dryad.6cp6f/1
title: Michiels et al. spectral data ocular sparks Figure 3

description: Estimated absolute spectra for blue and red ocular sparks under the blue illumination under which the experiments took place.
DOI: 10.5061/dryad.6cp6f/2
title: Michiels et al. data experiment 1 figure 4 table 1

description: Results from experiment one, showing the occurrence of red and blue ocular sparks in the presence or absence of copepods against a blue or red background.
DOI: 10.5061/dryad.6cp6f/3
title: Michiels et al. data experiment 2 figure 5 table 2

description: Frequencies of blue and red ocular sparks in individuals in either a hungry or satiated state, with copepods presented against a blue or red background.
DOI: 10.5061/dryad.6cp6f/4
title: Michiels et al. All data for ESM 6 - reflectance spectra of copepod eyes

description: Reflectance spectra of three ocelli, cuticle and red pigmented eye centre relative to a diffuse white standard.
DOI: 10.5061/dryad.6v774/1
title: Raw data and analytical code. Turissini et al. 2017

description: This .zip file contains all the analytical data and code used in Turissini et al. 2017.
DOI: 10.5061/dryad.7hg87/1
title: HollandTectonicsDiversityRCode

description: This file contains the R code necessary to simulate a metacommunity, as well as the commands used to generate figures 2–5 in the paper.
DOI: 10.5061/dryad.7n77q/1
title: Daily Rainfall on Barro Colorado Island, Panama

description: Daily_rainfall.txt holds two variables. The variable "ndays" is the date expressed as the integer number of days since 1 January 1980. The variable "rain" is daily rainfall in mm.
DOI: 10.5061/dryad.7n77q/2
title: Daily Solar Radiation on Barro Colorado Island, Panama

description: The file Daily_Solar_Radiation.txt holds two variables. The variable "ndays" is the date expressed as the integer number of days since 1 January 1980. The variable "MJm2" is daily solar irradiance in megajoules per meter square.
DOI: 10.5061/dryad.8153g/56
title: RAxML_mtDNAdataset3_dogOut_reducedPartns_inclHippidion
DOI: 10.5061/dryad.8153g/57
title: Morphometrics_Rscript_code
DOI: 10.5061/dryad.8153g/58
title: mtDNA_alignment_4_allPartns_revised.nex

description: Mitochondrial genome alignment data set 4. Evolutionary Placement algorithm analysis. All partitions. Revised version.
DOI: 10.5061/dryad.8153g/59
title: EPA_mtDNADataset4_allPartns_exclHippidion_revised
DOI: 10.5061/dryad.8153g/60
title: EPA_mtDNADataset4_allPartns_inclHippidion_revised
DOI: 10.5061/dryad.87pg9/1
title: Supporting Information - Appendix

description: Skeletal Measurements for all individuals measured across 42 species of extant mustelids.
DOI: 10.5061/dryad.9t3js/1
title: Ancona_et_al_Supp_Material_Appendix_1

description: Capture-recapture histories of 1,310 fledglings (687 males and 623 females) that recruited at ages 2 – 6 years between 1988 and 2013 on Isla Isabel, Mexico.
DOI: 10.5061/dryad.9t3js/2
title: Recruitment

description: Recruiting probabilities of 8,541 blue-footed booby fledglings from 15 cohorts.
DOI: 10.5061/dryad.b248v/1
title: GenBank accession numbers + comparative morphological and distribution data of drosophilids

description: Tables S1 and S2 list GenBank accession numbers of sequences used in the reconstruction of the phylogenetic relationships among drosophilids (and the genus Zaprionus respectively). Table S3 summarizes sex-specific body size estimates, average wing loading as well as the average latitudinal mean and an estimate of an alpha-hull derived range size.
DOI: 10.5061/dryad.bn37p/1
title: fecundity data 2008-2012

description: Fecundity data for all Oenother biennis plants that were genotyped in each plot each year 2008-2012.
DOI: 10.5061/dryad.bn37p/2
title: frequency of genotypes

description: Frequency data for the original 18 genotypes and the 8 most common outcrossed genotypes by year and plot.  Frequencies sum to 1 as rare genotypes are excluded.
DOI: 10.5061/dryad.cs777/1
title: Phenological development in the alpine tundra
DOI: 10.5061/dryad.hd2g2/1
title: Palani Hills Landscape change map

description: This study examines landscape change in the Palani Hills using LANDSAT imageries. Study was funded by INTACH Kodaikanal and IISER TIRUPATI.
DOI: 10.5061/dryad.hs518/1
title: RF-DNA Raw Data

description: Figure 2(b)_Absorbance-Wavenumber                                Figure 3_Current-Voltage                                                 Figure 4_Absorbance-Wavelength                                       Figure 5_PL data
DOI: 10.5061/dryad.jq16r/1
title: Preference data

description: Contains all the original data and transformed data used in a preference experiment for ground beef with and without finely textured beef.
DOI: 10.5061/dryad.km24v/1
title: gene-trees-incomplete
DOI: 10.5061/dryad.km24v/10
title: alignments-incomplete
DOI: 10.5061/dryad.km24v/3
title: alignments-complete
DOI: 10.5061/dryad.km24v/4
title: gene-trees-complete
DOI: 10.5061/dryad.km24v/5
title: species-trees-gtee-filtering
DOI: 10.5061/dryad.km24v/6
title: Supplementary Materials
DOI: 10.5061/dryad.km24v/7
title: species-trees-miss-filtering
DOI: 10.5061/dryad.mc8v5/1
title: PAS fishing data

description: Point abundance sampling (PAS) at three areas (stages) of the round goby invasion of the upper Danube River, i.e. date and season of sampling, river side, river kilometre, name of the river stretch, PAS point number of the samplig site and the caught fish species at the corresponding PAS. The second table gives the total length (TL), sex, weight, conodition factors (CF) and estimates of parasite infection rates (ectoparasites) of all sampled round gobies.
DOI: 10.5061/dryad.p4q04/1
title: Behavioral data
DOI: 10.5061/dryad.p4q04/2
title: PET Motion data
DOI: 10.5061/dryad.p4q04/4
title: PET DICOM Data part1

description: PET data in DICOM format. Note! All packages must be downloaded and combined before unzipping.
DOI: 10.5061/dryad.p4q04/5
title: PET DICOM data part 2

description: Download all packages and combine before unzipping.
DOI: 10.5061/dryad.p4q04/6
title: PET DICOM data part 3

description: Please combine all parts before unzipping.
DOI: 10.5061/dryad.p4q04/7
title: PET DICOM data part 4