cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.7tb72/20
title: Replicate_2_genotypes_16x

description: Input file for estimation of the SNP error rate. The R script to analyse this file is provided by Mastretta-Yanes et al. (2014).
DOI: 10.5061/dryad.7tb72/21
title: Replicate_1_genotypes_16x

description: Input file for estimation of the SNP error rate. The R script to analyse this file is provided by Mastretta-Yanes et al. (2014).
DOI: 10.5061/dryad.f61bp/1
title: Cox1_barcode_Sanger_x813seqs_Andujar_et_al. 2015

description: 813 cox1 gene DNA sequences obtained by PCR and Sanger sequencing of soil adult beetles and larvae. Name of sequences correspond to the voucher as indicated in table S5 of the supplementary materials in Andujar et al. 2015 Mol. Ecol.
DOI: 10.5061/dryad.f61bp/2
title: #2. DNA_BC_dataset_x13_protein_coding_genes_x264_contigs

description: DNA alignment of the mitogenome contigs included in the BC dataset in Andújar et al. 2015 Mol. Ecol.
DOI: 10.5061/dryad.gg273/11
title: per-4
DOI: 10.5061/dryad.gg273/12
title: per-1
DOI: 10.5061/dryad.gg273/13
title: rob-1
DOI: 10.5061/dryad.gg273/14
title: rob-2
DOI: 10.5061/dryad.gg273/15
title: rob-3
DOI: 10.5061/dryad.gg273/16
title: rob-4
DOI: 10.5061/dryad.k6j0v/1
title: Artificial selection summary

description: Chase scores for the artificial selection experiment
DOI: 10.5061/dryad.k6j0v/2
title: Green, blue, red spot chasing

description: Chase scores for the red, green and blue laser spots
DOI: 10.5061/dryad.s7282/1
title: matK sequences
DOI: 10.5061/dryad.s7282/2
title: rbcL sequences
DOI: 10.5061/dryad.s7282/3
title: Rosaceae rbcL error detection  sequences
DOI: 10.5061/dryad.11n64/2
title: Assembly.zip.bz2

description: This file contains two assembly files; contig_sequences.fa is a fasta formatted file of contig sequences from de novo assembly. un-assembled_reads.fastq is a fastq formatted file of un-assembled reads from de novo assembly.
DOI: 10.5061/dryad.1m54f/2
title: data describing the use of the different habitats by woodlice within the experimental landscape

description: This spreadsheet provides data collected from automated tracking of woodlice around an experimental fragmented landscape across different temperatures. Here, the data specifically provides the 'max velocity' (maximum speed moved in mm/s), 'mean velocity' (average speed moved in mm/s), 'proportion time moving' (proportion of the total trial time that the woodlice spent moving), and 'time moving' (actual total time the the woodlice spent moving) within each of the three so-called "habitats" (i.e., the corridor and the two habitat patches). These three habitats are indicated in the column entitled 'location'.
DOI: 10.5061/dryad.2v7kr/1
title: dataset

description: Please see paper for details on data collection, experimental design and data analysis.
DOI: 10.5061/dryad.55h83/1
title: Mitochondrial DNA alignments

description: Sequences and alignments used for whole mitochondrial and control region phylogenies. Sequences files in FASTA format contain Kauai sequences from this work (consensus sequences from mapping short reads against the chicken reference genome) and previously published sequences from Genbank. Sequences were aligned with ClustalW and are stored in nexus format.
DOI: 10.5061/dryad.5vv6t/1
title: Metadata Lutz et al 2015

description: A metadata file with information on each data file as well as units, column names, and sources of where the data came from.
DOI: 10.5061/dryad.5vv6t/12
title: Sensitivity Stumpage plus 10 percent
DOI: 10.5061/dryad.5vv6t/13
title: Stumpage Prices by Site
DOI: 10.5061/dryad.657d4/1
title: DataLeptoPublished
DOI: 10.5061/dryad.7f63m/8
title: Namibian demersal longline

description: Namibian demersal longline (modelled)
DOI: 10.5061/dryad.7nv0h/2
title: Nematode type specimens and reference sequences

description: File includes nematode type specimen ITS-2 sequences, US National Parasite Collection accession numbers, and GenBank accession numbers. These data were used to determine the species identity of larval ITS-2 sequences. An explanation of how these data were generated is included in the publication.
DOI: 10.5061/dryad.7nv0h/3
title: Adult-larvae matched nematode samples

description: File includes species-specific counts of larvae identified using ITS-2 sequences, species-specific counts of adult Trichostrongyle nematode specimens, strongyle fecal egg count (eggs/gram feces), capture date, and the GPS coordinates where each buffalo host was captured. This is the data set used to generate comparisons between larvae and adult sampling methods, Figure 1b & 1c, and Figure 3a. An explanation of how these data were generated is included in the publication.
DOI: 10.5061/dryad.7nv0h/4
title: Sequences for adult-matched nematode larvae

description: File includes the ITS-2 sequences for each larvae from hosts with matching adult nematode specimens. This is the data set used to generate the larval species-specific count data listed in datafile “Adult-larvae matched nematode samples.csv”. An explanation of how these data were generated is included in the publication.
DOI: 10.5061/dryad.7nv0h/5
title: Additional nematode larvae for bootstrapping

description: File includes larval species-specific nematode data from additional non-lethally sampled buffalo. This is the data set used to generate Figure 2 and Figure 3b & 3c. An explanation of how these data were generated is included in the publication.
DOI: 10.5061/dryad.96bc0/1
title: Data from: Sex-related Online Behaviors, Perceived Peer Norms and Adolescents’ Experience with Sexual Behavior: Testing an Integrative Model

description: SPSS file containing data from: Sex-related Online Behaviors, Perceived Peer Norms and Adolescents’ Experience with Sexual Behavior: Testing an Integrative Model
DOI: 10.5061/dryad.96bc0/2
title: Data from: Sex-related Online Behaviors, Perceived Peer Norms and Adolescents’ Experience with Sexual Behavior: Testing an Integrative Model

description: CVS file containing data from: Sex-related Online Behaviors, Perceived Peer Norms and Adolescents’ Experience with Sexual Behavior: Testing an Integrative Model
DOI: 10.5061/dryad.br86d/1
title: Cusack_et_al_random_versus_trail_camera_trap_data

description: Camera trap data on medium to large terrestrial mammals ("Species") collected at 54 camera stations ("Station") in Ruaha National Park, southern Tanzania. Sampling was carried out for two months during the dry season of 2013 (D under "Season") and two months during the wet season of 2014 (W under "Season"). Each camera station is associated with a randomly placed camera (Random under "Placement") and a trail-based camera (Trail under "Placement"), with the aim of comparing communities resulting from the two camera trap placement strategies. The date and time of each photographic event is also given ("DateTime").
DOI: 10.5061/dryad.f61bp/3
title: #3. DNA_3KB_dataset_x13_protein_coding_genes_x214_contigs

description: Alignment of the mitogenome contigs included in the 3KB dataset in Andújar et al. 2015 Mol. Ecol.
DOI: 10.5061/dryad.f61bp/4
title: #4. DNA_3KB+REF_dataset_x13_protein_coding_genes_x214_contigs + 245_ref_mitogenomes

description: Alignment of the mitogenome contigs included in the 3KB  dataset (214 contigs) and the reference coleoptera mitogenomes (245 sequences) used in Andújar et al. 2015 Mol. Ecol.
DOI: 10.5061/dryad.f61bp/5
title: #5. AminoAcid_3KB+REF_dataset_x13_protein_coding_genes_x214_contigs+245_ref_mitogenomes

description: Alignment of the amino acidic sequences for the mitogenome contigs included in the 3kb dataset (214 contigs) and the reference mitogenome sequences (245 sequences) used in Andújar et al. 2015 Mol. Ecol.
DOI: 10.5061/dryad.f61bp/6
title: #6. DNA_3KB+BC+REF_dataset_x13_protein_coding_genes_x214_contigs+264contigs+245_ref_mitogenomes

description: DNA alignment of the mitogenome contigs included in the BC dataset (264 contigs), the 3KB dataset (214 contigs) and the reference mitogenomes (245 sequences) used in Andújar et al. 2015 Mol. Ecol.
DOI: 10.5061/dryad.f61bp/7
title: #7. Phylogenetic_tree_in Figure_1_Andujar_et_al. 2015

description: Phylogenetic tree in Figure 1 in Andújar et al. 2015 Mol. Ecol.: Ultrametric time-calibrated Bayesian tree obtained in Phylobayes and BEAST for the dataset including 214 contigs longer than 3,000bp and 245 reference mitogenomes for Coleoptera (3KB dataset).
DOI: 10.5061/dryad.f61bp/8
title: #8. Phylogenetic_tree_in Figure_S2_Andujar_et_al. 2015

description: Phylogenetic tree in figure S3 in Andujar et al. 2015 Mol. Ecol.: Maximum likelihood phylogenetic tree including all reference mitogenomes (named in black), contigs in the 3KB dataset (green), contigs in BC dataset (blue) and Sanger cox1 barcodes (red). A backbone tree was obtained on the 3KB dataset including references using Phylobayes and BEAST software and subsequently metagenomic contigs from the BC dataset and the Sanger cox1 barcodes were added using a backbone tree approach in RAxML.
DOI: 10.5061/dryad.fp85d/1
title: Populationdynamics
DOI: 10.5061/dryad.fp85d/2
title: Evolution
DOI: 10.5061/dryad.fp85d/3
title: EcoEvodynamics
DOI: 10.5061/dryad.qg062/1
title: Phenotypic traits measured before selection

description: Phenotypic traits measured in adult and yearling common lizards before selection including morphology (snout-vent length SVL, total length TTL and body mass), prefered body temperature (mean and variance), resting metabolic rate (RMR) and maximum sprint speed (MSS, intercept and slope). Raw data are provided for all adults (A) and yearlings (Y) released in the 10 enclosures (SR1 to SR10) of this study.
DOI: 10.5061/dryad.qg062/2
title: Recapture data

description: Recapture data including information on survival (0 = not captured and assumed to be dead, 1 = survivor) and information on morphology of survivors (SVL, TTL and body mass like in phenotypic traits file)
DOI: 10.5061/dryad.qj07b.2
title: Data from: Potential leaders trade off goal-oriented and socially-oriented behavior in mobile animal groups
DOI: 10.5061/dryad.qj07b.2/1.2
title: Main data file for analyses - results per trial with uniformed fish

description: Times are given as the frame on the video, and times taken are given in numbers of frames elapsed unless otherwise stated. Distances are given in pixels unless otherwise stated.
DOI: 10.5061/dryad.qj07b.2/2.2
title: Time taken for the first fish in each group to leave at the start of training

description: Times are given as the frame on the video, and times taken are given in numbers of frames elapsed unless otherwise stated.
DOI: 10.5061/dryad.qj07b.2/3.2
title: Distances from each individual uninformed fish at the end of each trial

description: Distances are given in pixels unless otherwise stated.
DOI: 10.5061/dryad.qj07b.2/4.2
title: Coordinates for example trained fish paths, including uninformed fish final positions and arena features

description: Coordinates are given in pixels.
DOI: 10.5061/dryad.qs113/1
title: spec_data.tar

description: Contains all raw reflectance and irradiance spectra.
DOI: 10.5061/dryad.qs113/2
title: mate_choice_data

description: Data table of no-choice mating.
DOI: 10.5061/dryad.qs113/3
title: fungal_infection_data

description: Data table containing fungal infection information.
DOI: 10.5061/dryad.qs113/5
title: chc_data

description: Data table containing CHC profiles for each individual. Individuals are given in the first column, their sex in the second, and their color phenotype in the third. The remaining columns represent different CHC compounds measured.
DOI: 10.5061/dryad.qs113/6
title: fst_table

description: contains population codes, geographical distance between them, whether they are found on the same host or different hosts, and estimates of Fst for the locus controlling color. Also included is the mean genome-wide Fst (from Nosil et al. 2012 Proc B.) and the difference between Fst at the color locus minus mean genomic Fst.
DOI: 10.5061/dryad.r9j7b/1
title: Diversity of vascular epiphyte and related habitat factors collected in Bulong Nature Reserve, Xishuangbanna, SW China
DOI: 10.5061/dryad.2v7kr/2
title: aligned sequences

description: MHC aligned sequences
DOI: 10.5061/dryad.2v7kr/3
title: MHC

description: Raw data (1st sheet) and band sharing-similarity (2nd sheet)
DOI: 10.5061/dryad.2v7kr/4
title: Microsatellites data

description: raw data (1st sheet) and genalex summary-similarity (2nd sheet)
DOI: 10.5061/dryad.4bd12/1
title: Dataset S1-2

description: Dataset S1. Male and female traits by prothorax length (PTL): the log-log relationships between PTL and mandible length (ML) or flange length (FL), and those between PTL and wing length (WL). The male internal accessory gland size in weight is also shown; Dataset S2. Combined dataset for phylogenetic analysis.
DOI: 10.5061/dryad.55h83/2
title: Mitochondrial DNA phylogenies

description: Bayesian whole mitochondrial genome and control region phylogenies in nexus format.
DOI: 10.5061/dryad.55h83/3
title: Nuclear variants

description: Nuclear variants used for population genetic analyses (PCA, STRUCTURE and ADMIXTURE). One dataset contains 3000 randomly selected variants, and the other SNPs that were typed both in this study and Wragg et al (2012).
DOI: 10.5061/dryad.55h83/4
title: Supplementary table 2

description: Supplementary table 2 in tab-delimited text format, containing vocalization data and links to YouTube and database entry IDs for Xeno Canto sources.
DOI: 10.5061/dryad.58j2m/1
title: compressed data folder

description: unzip and read the "readme.txt" for instructions
DOI: 10.5061/dryad.6qg3g/1
title: Tropical montane avian sister species

description: This database includes information for 203 pairs of sister species of birds found in three tropical montane regions--the Himalayas, the Neotropics, and New Guinea. The pertinent data for each sister species pair include: 1) genetic distance, calculated using mitochondrial DNA, 2) a binary measure of geographical overlap (sympatry/allopatry), and 3) elevational divergence, measured from 0 (no elevational overlap) to 1 (complete elevational overlap).
DOI: 10.5061/dryad.72594.1
title: Data from: Reconstructing the phylogenetic history of long-term effective population size and life-history traits using patterns of amino acid replacement in mitochondrial genomes of mammals and birds
DOI: 10.5061/dryad.72594.2
title: Data from: Reconstructing the phylogenetic history of long-term effective population size and life-history traits using patterns of amino acid replacement in mitochondrial genomes of mammals and birds
DOI: 10.5061/dryad.72594.2/1.2
title: Dataset from Nabholz, Uwimana and Lartillot 2013
DOI: 10.5061/dryad.8h4v0/1
title: Data_landscape experiment

description: Data from landscape experiment
DOI: 10.5061/dryad.8h4v0/2
title: Data_mesocosm experiment

description: Data from mesocosm experiment
DOI: 10.5061/dryad.8h4v0/3
title: Data_environmental factors

description: Landscape experiment data combined with soil PCA axes and vegetation NMDS axes values
DOI: 10.5061/dryad.8h4v0/4
title: Abundance data_vegetation

description: Vegetation abundance data. Species occurred in only one plots are not included.
DOI: 10.5061/dryad.8h4v0/5
title: Temperature_landscape

description: Temperature data from climatic station and microclimatic loggers installed across the landscape
DOI: 10.5061/dryad.8h4v0/6
title: Temperature_shade house

description: Temperature data from climatic station and microclimatic loggers installed in the shade-house
DOI: 10.5061/dryad.8h4v0/7
title: Soil moisture and relative humidity_landscape

description: Soil moisture and relative humidity data collected from microclimatic loggers installed across the landscape
DOI: 10.5061/dryad.8h4v0/8
title: Soil moisture and relative humidity_shade house

description: Soil moisture and relative humidity data collected from microclimatic loggers installed in the shade-house
DOI: 10.5061/dryad.c8t69/1
title: deHeering_Rossion_EEGData

description: A compressed (zipped) folder containing 2 folders, one for each experiment described in the paper. In each experiment folder, there are individual folders for each infant tested, with 2 files in each, as described in the readMe.text file
DOI: 10.5061/dryad.fp060/1
title: CT data for holotype of Yi qi

description: This data archive contains CT slice images in .dcm format for the slab containing the holotype specimen (STM, Shandong Tianyu Museum, 31-2) of Yi qi, a scansoriopterygid dinosaur from the Middle-Upper Jurassic of Mutoudeng, Hebei Province, China. The CT data reveal the 3D structure of the specimen, and of the slab itself.
DOI: 10.5061/dryad.g4q84/1
title: Probability of breeding data

description: Data on field captured female bank voles (n=890) to examine the breeding probability (BRED: 0=no, 1=yes) including individual information PUUV infection status of the female (PUUV_INF: 0=uninfected, 1=infected) and head with (centred value over given period of breeding season), and population level information; the period of breeding season (season: 1=early, 2=mid, 3=late), the phase of vole cycle (cycle: 1= low phase, 2=increase phase, 3= peak phase) and random effect (random).
DOI: 10.5061/dryad.g4q84/2
title: Litter data

description: Breeding characteristics of 225 reproduced females to examine the reproductive effort (RE), the postpartum condition of the mothers (mocond) and the average condition of offspring in the litter (pupcond), including variables PUUV infection status of the mother (PUUV_INF: 0=uninfected, 1=infected), postpartum head with (centred value), the number of offspring in the litter (litter_size), the period of breeding season (season: 1=early and 2=mid), the phase of vole cycle (cycle: 1= low phase, 2=increase phase, 3= peak phase) and random effect (random).
DOI: 10.5061/dryad.k2d05/1
title: Cogongrass_449G__2320M_US_072514

description: SNP/INDEL data for 449 genotypes with 2320 markers
DOI: 10.5061/dryad.k2d05/2
title: Imperata accession collection data

description: This file contains the accession numbers of accessions sequenced and used in this manuscript. Data detailing the location in which the accessions were collected is also included.
DOI: 10.5061/dryad.mk159/1
title: AppendixSI

description: This file is an excel database that includes data and data collection information.
DOI: 10.5061/dryad.mk159/2
title: Hamiltonella sequence alignment

description: This is a text file of DNA sequence alignments in FASTA format
DOI: 10.5061/dryad.mk159/3
title: Regiella insecticola alignment

description: This is a text file of sequence alignments in FASTA format.
DOI: 10.5061/dryad.mk159/4
title: Serratia symbiotica alignment

description: This is a text file of a DNA sequence alignment in FASTA format.
DOI: 10.5061/dryad.mk159/5
title: X-type alignment

description: This is a text file of a DNA sequence alignment in FASTA format.
DOI: 10.5061/dryad.mk159/6
title: Rickettsiella viridis alignment

description: This is a text file of a DNA sequence alignment in FASTA format.
DOI: 10.5061/dryad.nk374/1
title: Haplotype data

description: For each individual, variants for mtDNA (nad5-4Ab) and cpDNA  (cpSSR pt30204, cpSSR Pt71936, trnF-trnL) combined into one of two mitotypes and one of the113 chlorotypes, respectively.
DOI: 10.5061/dryad.nk374/2
title: Sequence data

description: Aligned sequences for each individual at each loci (mtDNA nad5-4Ab), (cpDNA Pt30204, Pt71936, and trnF-trnL).
DOI: 10.5061/dryad.nk374/3
title: CCA input file

description: Environmental data for each population was extracted from a shapefile provided in the Canadian EcoAtlas (available at: http://www.data.gc.ca/data/en/dataset/9099a060-77ea-57f6-b1b9-50f9eeef435b)and pollen data were downloaded from the Neotoma Database (http://www.neotomadb.org/). CCA was performed using the Vegan package 2.0 in R 3.0.
DOI: 10.5061/dryad.qg062/3
title: Total fecundity of surviving females

description: Data on reproductive performances of surviving females including date at parturition, weight before and after parturition and total fecundity as defined in the main text.
DOI: 10.5061/dryad.qj07b.1
title: Data from: Potential leaders trade off goal-oriented and socially-oriented behavior in mobile animal groups
DOI: 10.5061/dryad.qj07b.2/5.2
title: Data from simulation of leadership
DOI: 10.5061/dryad.r31sg.2
title: Data from: Highly variable reproductive isolation among pairs of Catostomus species
DOI: 10.5061/dryad.r31sg.2/1.2
title: VCF file

description: This is the raw VCF file containing all 32,978 variant genetic sites initially identified from assembled reads.
DOI: 10.5061/dryad.r31sg.2/2.2
title: names_common_variants_0.5

description: This file is the formatted input file for entropy, the hierarchical Bayesian model used in this study. The file contains data for a subset of SNPs, in a simplified genotype likelihood format. SNPs in this file have a minor allele frequency &gt;0.05, and a maximum of 1 alternate allele. This file also contains only one locus per contig.
DOI: 10.5061/dryad.r31sg.2/3.2
title: artificial reference genome

description: This artificial reference genome was constructed via a de novo assembly (using DNAstar's smng) of a subset of 25 million short sequence reads, distributed across all taxa. We then assembled short reads to this
DOI: 10.5061/dryad.r31sg.2/4.2
title: Allele frequencies

description: This file gives allele frequencies at 4095 genetic loci for 21 different populations of fish, spanning 5 species. This is the input file for calculation of Nei's D and construction of a neighbor joining tree, visualizing genetic distance among populations.
DOI: 10.5061/dryad.r31sg.2/5.2
title: R script for Nei's D

description: This is an R script that calculates Nei's genetic distance between pairs of populations, using allele frequencies. The input file for this script is "ID_afreq_matrix.txt"
DOI: 10.15156/bio/sh2698093.08fu
title: SH2698093.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2698094.08fu
title: SH2698094.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.