cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27111478.v9
title: <b>500 Years of the Once Largest Fishery in the World:</b>A Comprehensive Catch Reconstruction for the Newfoundland Cod Fishery (1508-2023)

description: In 2024, the Canadian government lifted the moratorium on fishing on what was once the world’s largest single-species fishery. Over the last thirty years, fisheries scientists and historians have debated the role of long-term exploitation in the fisheries' collapse, but a lack of accurate historical catch data has hampered these discussions. This study introduces a groundbreaking new reconstruction of historical cod catches in Newfoundland from 1508 to 20231. This dataset is the longest, most comprehensive, and accurate reconstruction created to date and serves as a crucial tool for unravelling the complex dynamics of the fishery's rise and fall. The data illuminate the historical trajectories of diverse national fishing fleets and maps the evolving spatial dimensions of the fishery. The paper warns that the staggering decline gives cause for concern about recent optimism of the return of abundance.
DOI: 10.6084/m9.figshare.5400205.v1
title: multiple ROI h5 files

description: Data file contains data for expanded regions of interest. Data types are 1. per-voxel percent signal change time-courses for 6 runs2. per-voxel percent signal change time-courses for 6 runs, leave-one-out median - name of the array refers to the file that was left out3. per-voxel percent signal change time-course, grand average over runs (median)4. parameters of pRF fits per run (leave-one-out)5. parameters of pRF fits all runs <br># indices into prf output array:# 0: X (position, degrees of visual angle from fixation)# 1: Y (position, degrees of visual angle from fixation)# 2: s (size, standard deviation of gauss)# 3: n (nonlinearity power)# 4: a (amplitude)# 5: b (baseline, intercept value)# 6: rsq# 7: #<br>Github repo for analysis code on this dataset: https://github.com/tknapen/decode_encode<br>The voxel size of these recordings is 2mm isotropic, and the sample duration (TR) is 0.945 s. pRF fits were done using a CSS model implemented in Popeye, using a standard HRF shape.
DOI: 10.17632/n9spjvd467
title: Effect of nuts on anthropometric and glycemic indexes and blood pressure in secondary cardiovascular prevention: a systematic review and meta-analysis of randomized controlled trials

description: Context: Nut-enriched diets have a positive impact on cardiovascular risk factors, such as body mass, blood pressure, and fasting blood glucose. However, studies on individuals undergoing secondary cardiovascular prevention show controversial results. 
Objective: This systematic review with meta-analysis assessed the effect of nuts supplementation on anthropometric, glycemic, and blood pressure indices in patients with atherosclerotic cardiovascular disease, as well as the frequency of adverse events. 
Data Sources: Six databases were used for the search: PubMed, Cochrane Library, EMBASE, BVS, Web of Science and ClinicalTrials.gov, until February 2023, with no language restrictions.
Data Extraction: The Cochrane Handbook for Systematic Reviews of Interventions methodology and the PICO strategy were used. Seven independent reviewers were involved in data extraction and resolution of disagreements. Certainty of the evidence was assessed using the Grading of Recommendations Assessment, Development and Evaluation (GRADE) system.
DOI: 10.6084/m9.figshare.17372054.v1
title: Supplementary Material for: Late-Onset, Noninfectious Pulmonary Complications following Allogeneic Hematopoietic Stem Cell Transplantation: A Nationwide Cohort Study of Long-Term Survivors

description: <b><i>Background:</i></b> Survivors of allogeneic hematopoietic stem cell transplantation (allo-HSCT) are at risk for pulmonary adverse events. Data on late-onset noninfectious pulmonary complications in long-term adult survivors of allo-HSCT are limited and incomplete. <b><i>Objectives:</i></b> This study aimed (1) to determine occurrence and degree of pulmonary sequelae in adult survivors of allo-HSCT and (2) to identify associations between pulmonary function, high-resolution CT (HRCT), and clinical characteristics. <b><i>Method:</i></b> In a nationwide, single-center cross-sectional study, 103 survivors (aged median [range] 35 [17–58] years, 53% females) were examined 17 (6–32) years after allo-HSCT and compared with healthy controls (<i>n</i> = 105). Methods included pulmonary function tests and HRCT. <b><i>Results:</i></b> Chronic graft-versus-host disease was diagnosed in 33% of survivors, including 12% with bronchiolitis obliterans syndrome (BOS). Mean lung volumes (TLC, FVC, and FEV<sub>1</sub>) and gas diffusing capacity were &gt;80% of predicted for the survivors as a group, but significantly lower than in healthy controls. Pathological HRCT findings were detected in 48% of the survivors (71% airways disease, 35% interstitial lung disease, and 24% apical subpleural interstitial thickening). Air trapping (%) on HRCT correlated with % predicted FEV<sub>1</sub>, <i>p</i> &lt; 0.001. In a multiple logistic regression model, both BOS and pathological findings on HRCT were associated with chemotherapy prior to allo-HSCT, <i>p</i> &lt; 0.05. <b><i>Conclusions:</i></b> Long-term allo-HSCT survivors had significantly lower pulmonary function than age- and gender-matched healthy controls and nearly half had pathological findings on HRCT. Longitudinal data will determine if pulmonary sequelae will remain stable or progress. We recommend lifelong monitoring of pulmonary function in allo-HSCT survivors. HRCT provides additional information, but is not suited for surveillance.
DOI: 10.6084/m9.figshare.683903.v2
title: Very Simple Derivation Of A New Simple Equation Or Formula To Calculate Planets

description: Planets Perihelion Advance
DOI: 10.6084/m9.figshare.12998822.v3
title: Project Portfolio Dataset

description: This dataset comprises a portfolio of six projects each having a PMB consisting of a budget derived from a standardised first-principles, bottom-up estimation technique utilising a homogeneous set of resources, both consumable and non-consumable, which are inter-related in a highly complex, multi-dimensional manner with appropriate correlation between quantity, productivity rates and cost rates. The data set also includes detailed time-phased actual costs and progress over the life of each project as well as the time-phased values of revenue claimed for each project. The collection and attribution of 12,139 actual costs and the measurement of progress over a period of just under 109 consecutive weeks is consistent and standardised across all six projects providing a unique differentiator to other datasets. The data was collected over a continuous 109 week period, and is valid for research in portfolio, program or project management or control of multiple resource-constrained projects, where projects are managed collectively, generally in a standardised manner to support a strategic business aim.<br>The latest revision of the data includes updated information for all eight projects in the form of individual spreadsheets for each project. The updates include: · All new spread sheets have the pre-fix – EDM. All original datasets remain unchanged. · Earned Duration Information has been added to each project. The ability to create an EDM baseline and record actual EDM data or progress is simplified using the spreadsheets. Tasks, start and completion dates are simply copied into the spread sheet and the data for the EDM baseline, TPD and TED s-curves is created. The spread sheets also include various mechanisms for recording or estimating work progress. · Actual start and finish dates have been added to each task for each project. The previous dataset only recorded the progress of each task at the completion of a reporting month. This update provides greater granularity for start and finish dates for each task.<br>
DOI: 10.6084/m9.figshare.18858163.v1
title: Etesevimab in combination with JS026 neutralizing SARS-CoV-2 and its variants

description: The neutralizing antibody is a potential therapeutic for the ongoing COVID-19 pandemic. As an antiviral agent, numerous mAbs recognize the epitopes that overlap with ACE2-binding sites in the SARS-CoV-2-RBD. Some studies have shown that residual changes on the spike protein can significantly decrease the efficiency of neutralizing antibodies. To address this issue, a therapeutic cocktail could be an effective countermeasure. In the present study, we isolated a fully human neutralizing antibody, JS026, from a convalescent patient. The comparative analysis revealed that JS026 binding to SARS-CoV-2-RBD mainly located between epitopes for class 2 and class 3 mAbs as opposed to that of class 1 (etesevimab) antibodies. A cocktail of etesevimab and JS026 increased neutralizing efficacy against both wild-type SARS-CoV-2 and the recent emergence of Alpha, Beta, Gamma, and Delta variants. JS026 and the cocktail reduced virus titers in the infected lungs of hACE2 transgenic mice and relieved pathological changes. These findings would benefit antibody-based therapeutic countermeasures in the treatment of COVID-19.
DOI: 10.6084/m9.figshare.29123030.v1
title: Histograms of Medical Embarrassment across gender, embarrassment type and samples

description: This project explored how familiarity with a physician affects patient embarrassment in medical settings. Across three studies, participants imagined six scenarios involving bodily or judgment-related embarrassment with either a familiar or unfamiliar doctor. Results showed that familiarity increased judgment-related embarrassment but decreased bodily embarrassment. This pattern held across college students and nationally representative U.S. samples, regardless of doctor gender.
DOI: 10.6084/m9.figshare.6570704.v1
title: Symbiodinium morphology data and statistics

description: Coral bleaching is the dysfunction of the coral-algal endosymbiosis and is characterized as a loss of <i>Symbiodinium</i>cells from host tissues or the loss of photosynthetic pigments. Symbiosis breakdown occurs as a result elevated temperature beyond the meta-organism’s thermal threshold. Despite the impacts of coral bleaching we have not resolved the tipping points and the mechanisms underlying bleaching responses. This study characterized the cellular responses of <i>Symbiodinium</i>sp. (C3) within <i>Acropora aspera</i>exposed to thermal stress. Thermally stressed corals experienced significant declines in <i>Symbiodinium</i>density and dark-adapted yield following exposure to bleaching at 34 °C for four consecutive days, equating to an ecological thermal stress of 4-degree heating weeks (DHW). However large impacts on <i>Symbiodinium</i>morphology and cell division were seen following exposure to temperatures between 2-3 °C (2 DHW) below the bleaching threshold, and by 4 DHW over 90% of <i>Symbiodinium</i>were degraded. While these sub-bleaching levels will not trigger bleaching alerts it is vital that we begin to quantify how these significant sub-bleaching levels will impact the fitness of <i>Symbiodinium</i>populations, their coral hosts and subsequently reefs worldwide.
DOI: 10.6084/m9.figshare.12118704.v1
title: Maternal Care Fitness Manuscript R files & datasets

description: Included are the R code files and datasets for "Attentive red squirrel mothers have faster-growing pups and higher lifetime reproductive success" by Westrick et al. 2020 published in XX. This manuscript is #109 from the Kluane Red Squirrel Project.
DOI: 10.17632/xfr8sprcf5
title: Strain Rate Results and Block Modeling Files for Southern Cascadia

description: Strain rate results and block modeling files for southern Cascadia from Nuyen & Schmidt (2022). Gridded strain rate results are provided in strain_gridded_staticmode.txt. Please refer to README_strain.txt for additional information on the file columns. The remaining files relate to block modeling performed using TDEFNODE (McCaffrey, 2009). Please refer to README_block_models.txt for explanations of the different block modeling files.
DOI: 10.6084/m9.figshare.22709062.v2
title: ADDITIONAL EXCEL FILES (Gomes Moreira and Jan)

description: SUPPLEMENTARY EXCEL FILE 1: Unique Probe IDs for the GSE datatsets SUPPLMENTARY EXCEL FILE 2: Top Table gene ranking of the selected PD microarray datasets TABEL S3: Select microarray studies in neurodegenerative diseases with GEO accession TABLE S4: Summary table on CSF proteomics on select markers within the CSF portal <br>
DOI: 10.17632/2nhjxzgf8v
title: Life cycle inventory dataset and assessment of four case studies of electricity generation

description: This dataset contains the LCA inventory data (case studies and regionalised supply chain) to reproduce the results of the the study "Spatially explicit life cycle assessment reveals environmental hotspots of renewable electricity generation" and the evaluation of the LCIA results. A detailed description of how to use the inventory data is provided in the README file. To reproduce the hotspot maps presented in the study with qgis two layer style files are provided.
DOI: 10.17632/3nkk9dprpn
title: Problem Instances for z-block k-crane Scheduling Model in a Yard Terminal

description: Problem Instances and Experimental Results for z-block k-crane Scheduling Model in a Yard Terminal

Data Abstract:

0. Problem Instances
- K: Number of cranes
- Z: Number of blocks
- B: Number of bays within a block
- BL: The far-left bay of blocks
- BR: The far-right bay of blocks
- CBL: The crane operating range left
- CBR: The crane operating range right
- unit: The constant processing time of a single container operation (or movement) by a yard crane
- clearance: The minimum safety distance between two adjacent YCs
- N: Number of tasks, including dummy tasks
- T: Number of time steps in the planning time horizon
- release: The release time of task i
- bay: The bay location of task i
- row: The row location of task i
- tier: The initial layer location of task i. If i is on the top of the stack, then 1
- obs: the time steps required for cranes to move a slot outside of blocks

1. Experimental Results MIP (CPLEX)
- Directory information: problem type (x_block k_crane) / obs (1 or 2) / problem size (n-06 ~ n-12) / problem number (1~5)
- Problem number folder information
 - figure.png: A figure of crane trajectory 
 - log.txt: Engine log of Cplex Optimization Studio
 - ~.out files: input data which used in solutionPlot_1.py
 - solutionPlot_z-block.py: python file to generate "figure.png"

2. Experimental Results GA-CBS (Java)
- Directory information: problem type (z_block k_crane) / obs (1 or 2)
- File information
 - problem_n##.txt: BSF and program run time for problem instances with ## number of tasks
 - problem_n##_##.png: The plot of BSF for the problem
DOI: 10.17632/vmvpvjj4g3
title: Tensile Creep Tests on Tissue Slices of Norway Spruce

description: This dataset presents experimental results from our work (Ferrara and Wittel, 2025), where creep tests were conducted on tissue slices of Norway Spruce in different anatomical orientations—longitudinal (L), radial (R), and tangential (T)—under varying relative humidity (RH) levels of 30%, 65%, and 90%, corresponding to moisture contents of 0.07, 0.12, and 0.2, respectively. The tissue samples were sliced in all orientations: {LR, RL, RT, TR, LT}, where the first letter indicates the longest dimension and the second represents the width. The {LR, RL, RT, TR} samples feature alternating bands of earlywood (EW) and latewood (LW). For the LT samples, distinct tissues were isolated for EW and LW: {LT-EW, LT-LW}. The tests were conducted at two different loading degrees (LD), 30% and 50% of the tensile strength for each case. Reference values for tensile strength were taken from our previous work (Ferrara and Wittel, 2024).

The dataset is organized by sample type, with each file containing multiple sheets, one for each experiment. Each sheet provides detailed information about the sample, including its dimensions, RH during the experiment, applied load, and loading degree. Moreover, time, creep strain, and creep compliance measurements are recorded for each test.

The dataset also includes four CSV files. One contains the elastic stiffness values determined in our previous work (Ferrara and Wittel, 2024), which are useful for studying how creep compliance scales with elastic compliances. The remaining three files contain the results of the DVS tests on earlywood, latewood, and transition wood tissue, reported in the appendix of our work (Ferrara and Wittel, 2025).

A. Ferrara and F.K. Wittel (2025), "Tensile Creep of Norway Spruce on the Tissue Scale"
A. Ferrara and F.K. Wittel (2024), "Micro-mechanical tests on tissue slices of Norway spruce: tensile and shear performance"
DOI: 10.6084/m9.figshare.21806955.v1
title: Dataset: Jellyfish observations of Greece (2022)

description: Raw data from the project of Jellyfish observations in Greece.<br> These data are more interesting because of the 2022 jellyfish bloom of the species Pelagia noctiluca.
DOI: 10.6084/m9.figshare.28601348.v1
title: Figure 1

description: Raw data values
DOI: 10.17632/9nfxyvfk9n
title: Data for: Deep Sulfate-Methane-Transition and sediment diagenesis in the Gulf of Alaska (IODP Site U1417)

description: Supplemental Data to Zindorf et al., Deep Sulfate-Methane-Transition and sediment diagenesis in the Gulf of Alaska (IODP Site U1417)
DOI: 10.6084/m9.figshare.21681455.v1
title: Supplementary Material for: Cancer associated fibroblasts induce proliferation and therapeutic resistance to everolimus in neuroendocrine tumors through STAT3 activation

description: Introduction Cancer-associated fibroblasts (CAF) have been identified as relevant contributors to cancer progression and drug resistance in many tumors. Although neuroendo-crine tumors (NET) are often associated with a strong stromal reaction, no study has addressed whether CAF are involved in progression and therapeutic resistance in NET. The aim of this study was to characterize the role of CAF in NET. Methods We established primary CAF cultures derived from NET liver metastases to study the effect on NET cell lines NT-3 and BON. Immunohistochemistry was performed on tissue sections of primary and metastatic NET tissue. Results Immunohistochemistry identified CAF dispersed in between tumor cells and within fibrotic bands separating tumor cell clusters in NET. Stimulating NET cells with CAF decreased expression of SSTR2 and chromogranin A and induced expression of CXCR4. CAF induced a 2.3-fold increase in proliferation and completely reversed the response to everolimus in NT-3 cells. We identified STAT3 as the main signal-ing pathway induced by CAF. STAT3 targeting by small interfering RNA (siRNA) knockdown and inhibitors prevented CAF induced proliferation and restored evero-limus responsiveness. STAT3 activation in NET tissue was associated with de-creased chromogranin A expression, increased Ki-67 index and decreased 5-year overall and progression free survival. CAF directly influence proliferation and thera-peutic response in NET cells. Conclusion Identifying STAT3 as the contributing pathway of this so far neglected tumor-stroma interaction has the potential to become a new therapeutic target to halt tumor growth and to restore therapeutic responsiveness in NET.
DOI: 10.6084/m9.figshare.26028778.v1
title: Data used in Kulha et al. 2024: Landscape configuration and storm characteristics drive spatial patterns of wind disturbance in boreal forest landscapes

description: Data used in Kulha et al. 2024: Landscape configuration and storm characteristics drive spatial patterns of wind disturbance in boreal forest landscapes. The metadata-file provides explanations on the variables in the csv-file.
DOI: 10.6084/m9.figshare.26926918.v2
title: Haplotype-resolved genome assembly of the tetraploid Youcha tree Camellia meiocarpa Hu

description: Camellia meiocarpa Hu, a member of <b>Youcha</b>species in the genus Camellia, is an important woody edible <b>Youcha</b> plant with high ecological and economic value. The haplotype-resolved genome assembly of this tetraploid species can shed light on genomic evolution and the functional divergence among subgenomes and haplotypes. In this study, we assembled the first haplotype-resolved reference genome of C. meiocarpa at the chromosome level, utilizing a combination of sequencing technologies: PacBio HiFi, Hi-C, and Illumina platforms. The resulting scaffolds, with an N50 of 44.46 Mb and 41.40 Mb, were anchored to 60 chromosomes and further assigned to four distinct haplotypes, each with unique transposon characteristics. The lengths of four hyplotypes are 2967.25Mb, 3041.66Mb, 2946.45Mb and 3030.54Mb. A total of 51336, 52010, 51586, and 52631 protein-coding genes were predicted for each of the four haplotypes, of which 99.4% were functionally annotated. Following annotation, we identified non-coding RNAs and repetitive elements within the four haplotypes of C. meiocarpa. Genome rearrangements and unique gene families revealed significant functional divergence among the haplotypes, suggesting their distinct roles in controlling vital processes and phenotypes. This genomic resource of the tetraploid C. meiocarpa is expected to greatly facilitate research at the molecular and genetic levels, particularly for the conservation and utilization of the <b>Youcha</b>.
DOI: 10.6084/m9.figshare.22099871.v1
title: Quercus lobata

description: Quercus lobata
DOI: 10.6084/m9.figshare.28194893.v1
title: Simulated Dataset3

description: Simuation toolPlatformDataset nameNo. of spotsNo. of genesNo. of SVGsNo. of non-SVGsNo. of clustersSRTsimSTBC_logFC=0.554632001001007BC_logFC=1.054632001001007BC_logFC=1.554632001001007BC_logFC=2.054632001001007