cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1852866.08fu
title: SH1852866.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1852867.08fu
title: SH1852867.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh484168.07fu
title: SH484168.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh484169.07fu
title: SH484169.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1852868.08fu
title: SH1852868.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.8yx49w
title: Occurrence Download

description: A dataset containing 731121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Nepal",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 731121 records from 447 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138631-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vj8j23
title: Occurrence Download

description: A dataset containing 188050 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Ulmus glabra Huds., Ulmus glabra Mill., Ulmus glabra x minor, Ulmus glabra × minor)"
 ]
}

 The dataset includes 188050 records from 597 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022706-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vykfvp
title: Occurrence Download

description: A dataset containing 1197408 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Animalia",
 "TaxonKey is Icteridae"
 ]
 },
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1197408 records from 376 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004357-150811131857512/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.73vzr3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cirsium rassulovae B.A.Scharip., 1989"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138638-230224095556074/datasets/export for details.
DOI: 10.15468/dl.73dynh
title: Occurrence Download

description: A dataset containing 69404 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bombus impatiens Cresson, 1863"
 ]
}

 The dataset includes 69404 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022723-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.izil2v
title: Occurrence Download

description: A dataset containing 273 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brahea armata S.Watson"
 ]
}

 The dataset includes 273 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004357-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2k87nv
title: Occurrence Download

description: A dataset containing 2104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cirsium pyrenaicum (Jacq.) All."
 ]
}

 The dataset includes 2104 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138633-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9vmdk
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Slovenia",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Castor fiber Linnaeus, 1758"
 ]
}

 The dataset includes 92 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066070-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvovez
title: Occurrence Download

description: A dataset containing 301 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ameerega trivittata (Spix, 1824)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 301 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004357-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88f3dj
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cirsium ×reichardtii Jur."
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138641-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dukcme
title: Occurrence Download

description: A dataset containing 1179 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "Country is China",
 "Country is Japan",
 "Country is Korea, Republic of",
 "Country is Korea (Democratic People’s Republic of)",
 "Country is Chinese Taipei"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Quercus aliena Blume",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1179 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035592-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.17120438.v1
title: Additional file 1 of Germline breast cancer susceptibility genes, tumor characteristics, and survival

description: Additional file 1. Supplementary tables and figures. Description: This file contains Tables S1 to S10 and Fig. S1 to S12.
DOI: 10.6084/m9.figshare.11880504
title: Additional file 1 of Comprehensive assessment of computational algorithms in predicting cancer driver mutations

description: Additional file 1. Default prediction categories of 17 algorithms.
DOI: 10.6084/m9.figshare.19220614.v1
title: Additional file 2 of Functional genomics elucidates regulatory mechanisms of Parkinson’s disease-associated variants

description: Additional file 2: Table S5. PD index SNPs and SNPs that were in linkage disequilibrium with the index SNPs (r2 &gt; 0.6). Table S9. Summary of ASE analysis. Table S10. PD ASE SNPs were in linkage disequilibrium with coding SNPs. Table S11. Association significance between the TF binding-disrupting SNPs and gene expression in the human brain tissues. Table S12. Association significance between the TF binding-disrupting SNPs and gene expression in the human brain tissues (at least two brain eQTL datasets). Table S13. Association significance between the TF binding-disrupting SNPs and gene expression in the human brain tissues (at least three brain eQTL datasets).
DOI: 10.6084/m9.figshare.11880543.v1
title: Additional file 9 of Comprehensive assessment of computational algorithms in predicting cancer driver mutations

description: Additional file 9. Performance metrics of 33 algorithms using the median scores as threshold to make binary predictions for benchmark 2.
DOI: 10.6084/m9.figshare.7686302
title: MOESM3 of ZEB1-AS1 initiates a miRNA-mediated ceRNA network to facilitate gastric cancer progression

description: Additional file 4. The down-regulated miRNAs were obtained by screening the TCGA database.
DOI: 10.6084/m9.figshare.7686371
title: MOESM3 of Peripheral T cell receptor beta immune repertoire is promptly reconstituted after acute myocardial infarction

description: Additional file 3: Table S2. The distribution of V and J gene segments in each sample.
DOI: 10.6084/m9.figshare.12926022
title: Additional file 2 of Metabolome and transcriptome analyses of the molecular mechanisms of flower color mutation in tobacco

description: Additional file 2: Table S2. List, characteristics and concentration (ion intensity) of the differentially accumulated metabolites between pink-colored and white-colored tobacco flowers.
DOI: 10.6084/m9.figshare.11880510.v1
title: Additional file 21 of Comprehensive assessment of computational algorithms in predicting cancer driver mutations

description: Additional file 21. Performance metrics of 33 algorithms using the median scores as threshold to make binary predictions for benchmark 5.
DOI: 10.6084/m9.figshare.11880513
title: Additional file 22 of Comprehensive assessment of computational algorithms in predicting cancer driver mutations

description: Additional file 22. Performance metrics of 17 algorithms using default categorical predictions for benchmark 5.
DOI: 10.6084/m9.figshare.12926025.v1
title: Additional file 3 of Metabolome and transcriptome analyses of the molecular mechanisms of flower color mutation in tobacco

description: Additional file 3: Table S3. Overview of the transcriptome sequencing dataset and mapping statistics in tobacco flowers collected from Yunyan 87 (Y87) and Yunyan 87 mutant (Y87W).
DOI: 10.6084/m9.figshare.12926039.v1
title: Additional file 1 of Smartphone and medical application use among dentists in China

description: Additional file 1.
DOI: 10.6084/m9.figshare.19220614
title: Additional file 2 of Functional genomics elucidates regulatory mechanisms of Parkinson’s disease-associated variants

description: Additional file 2: Table S5. PD index SNPs and SNPs that were in linkage disequilibrium with the index SNPs (r2 &gt; 0.6). Table S9. Summary of ASE analysis. Table S10. PD ASE SNPs were in linkage disequilibrium with coding SNPs. Table S11. Association significance between the TF binding-disrupting SNPs and gene expression in the human brain tissues. Table S12. Association significance between the TF binding-disrupting SNPs and gene expression in the human brain tissues (at least two brain eQTL datasets). Table S13. Association significance between the TF binding-disrupting SNPs and gene expression in the human brain tissues (at least three brain eQTL datasets).
DOI: 10.6084/m9.figshare.11880531.v1
title: Additional file 5 of Comprehensive assessment of computational algorithms in predicting cancer driver mutations

description: Additional file 5. Performance metrics of 33 algorithms using the median scores as threshold to make binary predictions for benchmark 1.
DOI: 10.6084/m9.figshare.12926031
title: Additional file 5 of Metabolome and transcriptome analyses of the molecular mechanisms of flower color mutation in tobacco

description: Additional file 5: Table S5. Expression fold change of up- and down-regulated transcription factors MYB, bHLH and WD40.
DOI: 10.6084/m9.figshare.7686311
title: MOESM4 of ZEB1-AS1 initiates a miRNA-mediated ceRNA network to facilitate gastric cancer progression

description: Additional file 5. The miRNAs binding to ZEB1-AS1 were predicted using RNA22 software.
DOI: 10.6084/m9.figshare.11880534
title: Additional file 6 of Comprehensive assessment of computational algorithms in predicting cancer driver mutations

description: Additional file 6. Performance metrics of 17 algorithms using default categorical predictions for benchmark 1.
DOI: 10.6084/m9.figshare.7686485
title: Additional file 4: of Analysing the rice young panicle transcriptome reveals the gene regulatory network controlled by TRIANGULAR HULL1

description: Table S4. Genes assigned to KEGG. (XLS 50 kb)
DOI: 10.6084/m9.figshare.12926045
title: Additional file 2 of Smartphone and medical application use among dentists in China

description: Additional file 2.
DOI: 10.6084/m9.figshare.12926045.v1
title: Additional file 2 of Smartphone and medical application use among dentists in China

description: Additional file 2.
DOI: 10.6084/m9.figshare.7686497.v1
title: Additional file 5: of Analysing the rice young panicle transcriptome reveals the gene regulatory network controlled by TRIANGULAR HULL1

description: Table S5. Genes assigned to KEGG pathway. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7686362.v1
title: MOESM2 of Peripheral T cell receptor beta immune repertoire is promptly reconstituted after acute myocardial infarction

description: Additional file 2: Table S1. The analysis of TCRÎ˛ immune repertoire sequencing data.
DOI: 10.6084/m9.figshare.12926028.v1
title: Additional file 4 of Metabolome and transcriptome analyses of the molecular mechanisms of flower color mutation in tobacco

description: Additional file 4: Table S4. The primer sequences of genes used for quantitative real-time PCR.
DOI: 10.6084/m9.figshare.11880840.v1
title: The cryptic unstable transcripts are associated with developmentally regulated gene expression in blood-stage <i>Plasmodium falciparum</i>

description: The tight gene expression regulation controls the development and pathogenesis of human malaria parasite <i>Plasmodium falciparum</i> throughout the complex life cycle. Recent studies have revealed the pervasive nascent transcripts in the genome of <i>P. falciparum</i>, suggesting the existence of a hidden transcriptome involved in the dynamic gene expression. However, the landscape and related biological functions of nascent non-coding RNAs (ns-ncRNAs) are still poorly explored. Here we profiled the transcription dynamics of nascent RNAs by rRNA-depleted and stranded RNA sequencing over the course of 48-h intraerythrocytic developmental cycle (IDC). We identified the genome-wide sources of a total of 2252 ns-ncRNAs, mostly originating from intergenic and untranslated regions of annotated genes. By integrating the nascent RNA abundances with ATAC-seq and ChIP-seq analysis, we uncovered the euchromatic microenvironment surrounding the ns-ncRNA loci, and revealed a positive correlation between ns-ncRNAs and corresponding mRNA abundances. Finally, by gene knock-down strategy, we showed that the cooperation of RNA exosome catalytic subunit PfDis3 and PfMtr4 cofactor played a major role in ns-ncRNAs degradation. Collectively, this study contributes to understanding of the potential roles of short-lived nascent ncRNAs in regulating gene expression in malaria parasites.
DOI: 10.6084/m9.figshare.12926019.v1
title: Additional file 1 of Metabolome and transcriptome analyses of the molecular mechanisms of flower color mutation in tobacco

description: Additional file 1: Table S1. List, characteristics and concentration (ion intensity) of the metabolites detected in pink-colored and white-colored tobacco flowers.
DOI: 10.6084/m9.figshare.9783692.v1
title: Functional annotation

description: Gene functional annotation
DOI: 10.6084/m9.figshare.12926028
title: Additional file 4 of Metabolome and transcriptome analyses of the molecular mechanisms of flower color mutation in tobacco

description: Additional file 4: Table S4. The primer sequences of genes used for quantitative real-time PCR.
DOI: 10.6084/m9.figshare.9783695.v1
title: Phylogenetic tree

description: Phylogenetic tree of C. crocuta and seven other species constructed by the maximum likelihood method based on 6,601 single-copy orthologues.
DOI: 10.6084/m9.figshare.9783698
title: Repeat annotation

description: Repeat annotation
DOI: 10.6084/m9.figshare.9783698.v1
title: Repeat annotation

description: Repeat annotation
DOI: 10.6084/m9.figshare.12933086
title: Change in soil microbial quotient along an altitudinal gradient in an alpine-gorge region

description: We conducted a 3-year in-situ soil core incubation experiment in dry valley shrub (A1), a valley-mountain ecotone forest (A2), a subalpine coniferous forest (A3), an alpine coniferous forest (A4) and an alpine meadow (A5) across a 2431-m altitudinal gradient in an alpine-gorge region on the eastern Qinghai-Tibetan Plateau. We measured SMQ in both the soil organic layer (OL) and mineral soil layer (ML) at different critical periods.
DOI: 10.6084/m9.figshare.9783692
title: Functional annotation

description: Gene functional annotation
DOI: 10.6084/m9.figshare.9783710
title: Gene family construction statistic

description: Gene family construction statistic
DOI: 10.6084/m9.figshare.7686497
title: Additional file 5: of Analysing the rice young panicle transcriptome reveals the gene regulatory network controlled by TRIANGULAR HULL1

description: Table S5. Genes assigned to KEGG pathway. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.9783701
title: Protein sequence

description: Protein sequences
DOI: 10.6084/m9.figshare.9783707.v1
title: Gene family construction

description: Gene family construction result using orthoMCL
DOI: 10.6084/m9.figshare.7686398.v1
title: MOESM6 of Peripheral T cell receptor beta immune repertoire is promptly reconstituted after acute myocardial infarction

description: Additional file 6: Table S5. The distribution of CDR3 AA clonotypes in each sample.
DOI: 10.6084/m9.figshare.7686404
title: MOESM7 of Peripheral T cell receptor beta immune repertoire is promptly reconstituted after acute myocardial infarction

description: Additional file 7: Table S6. The distribution of AA usage in CDR3.