cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11407266
title: Targeted therapy for solid tumors and risk of hypertension: a meta-analysis of 68077 patients from 93 phase III studies

description: <b>Objective</b>: Hypertension is a common adverse event with targeted agents in cancer patients and can lead to serious and sometimes lethal cardiovascular complications. The authors performed a meta-analysis of clinical trials aiming to evaluate the incidence and Relative Risk (RR) of developing all-grade and high-grade Hypertension Events (HE) in patients with solid tumors receiving targeted therapy. <b>Methods</b>: A review of citations from PubMed was performed and studies were selected based on the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) statement. The search was limited to randomized phase III trials published in English focused on the efficacy and safety of targeted agents in cancer patients, reporting data on HE. Incidence, RR and relative 95% CIs were analyzed using random or fixed-effects models. Overall incidences were calculated and further compared with the chi-squared test for proportions. <b>Results</b>: Ninety-three phase III trials were included, with a total of 68,077 patients. Prostate cancer was the most represented (18.9%), followed by breast cancer (17.3%) and colorectal cancer (16.4%). The incidence of all- and high-grade HE was 23.47% and 8.57%, respectively, with the highest incidence of serious HE reported by adjuvant Sunitib/Sorafenib (29.03%). The highest RR of high-grade HE was observed with Bevacizumab in patients with advanced cervical cancer. By drug category, the highest RR of high-grade HE was reported by VEGFR/EGFR TKIs. <b>Conclusion</b>: According to these data, monitoring this class of toxicities is of primary importance to avoid hypertension worsening and, thus, the risk of major cardiovascular events.
DOI: 10.6084/m9.figshare.11407266.v1
title: Targeted therapy for solid tumors and risk of hypertension: a meta-analysis of 68077 patients from 93 phase III studies

description: <b>Objective</b>: Hypertension is a common adverse event with targeted agents in cancer patients and can lead to serious and sometimes lethal cardiovascular complications. The authors performed a meta-analysis of clinical trials aiming to evaluate the incidence and Relative Risk (RR) of developing all-grade and high-grade Hypertension Events (HE) in patients with solid tumors receiving targeted therapy. <b>Methods</b>: A review of citations from PubMed was performed and studies were selected based on the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) statement. The search was limited to randomized phase III trials published in English focused on the efficacy and safety of targeted agents in cancer patients, reporting data on HE. Incidence, RR and relative 95% CIs were analyzed using random or fixed-effects models. Overall incidences were calculated and further compared with the chi-squared test for proportions. <b>Results</b>: Ninety-three phase III trials were included, with a total of 68,077 patients. Prostate cancer was the most represented (18.9%), followed by breast cancer (17.3%) and colorectal cancer (16.4%). The incidence of all- and high-grade HE was 23.47% and 8.57%, respectively, with the highest incidence of serious HE reported by adjuvant Sunitib/Sorafenib (29.03%). The highest RR of high-grade HE was observed with Bevacizumab in patients with advanced cervical cancer. By drug category, the highest RR of high-grade HE was reported by VEGFR/EGFR TKIs. <b>Conclusion</b>: According to these data, monitoring this class of toxicities is of primary importance to avoid hypertension worsening and, thus, the risk of major cardiovascular events.
DOI: 10.6084/m9.figshare.21614721
title: Genome assembly and annotation of Hongli-1 (<i>Castanea mollissima</i> Blume)

description: The genome and annotation file of the genome of 'Hongli-1', a variety of Chinese chestnut (<i>Castanea mollissima</i> Blume)
DOI: 10.6084/m9.figshare.21614721.v2
title: Genome assembly and annotation of Hongli-1 (<i>Castanea mollissima</i> Blume)

description: The genome and annotation file of the genome of 'Hongli-1', a variety of Chinese chestnut (<i>Castanea mollissima</i> Blume)
DOI: 10.6084/m9.figshare.21368782
title: Additional file 4 of Lrpap1 deficiency leads to myopia through TGF-β-induced apoptosis in zebrafish

description: Additional file 3. Supplementary Table S2. Hematoxylin-Eosin (HE) staining procedure.
DOI: 10.6084/m9.figshare.21368782.v1
title: Additional file 4 of Lrpap1 deficiency leads to myopia through TGF-β-induced apoptosis in zebrafish

description: Additional file 3. Supplementary Table S2. Hematoxylin-Eosin (HE) staining procedure.
DOI: 10.6084/m9.figshare.21368785
title: Additional file 5 of Lrpap1 deficiency leads to myopia through TGF-β-induced apoptosis in zebrafish

description: Additional file 4. Supplementary Table S3. Information of 165 apoptosis pathway related genes in GSEA analysis.
DOI: 10.6084/m9.figshare.21368785.v1
title: Additional file 5 of Lrpap1 deficiency leads to myopia through TGF-β-induced apoptosis in zebrafish

description: Additional file 4. Supplementary Table S3. Information of 165 apoptosis pathway related genes in GSEA analysis.
DOI: 10.6084/m9.figshare.21368788
title: Additional file 6 of Lrpap1 deficiency leads to myopia through TGF-β-induced apoptosis in zebrafish

description: Additional file 5. Supplementary Table S4. Gene information of GO analysis.
DOI: 10.6084/m9.figshare.21368788.v1
title: Additional file 6 of Lrpap1 deficiency leads to myopia through TGF-β-induced apoptosis in zebrafish

description: Additional file 5. Supplementary Table S4. Gene information of GO analysis.
DOI: 10.6084/m9.figshare.21368791
title: Additional file 7 of Lrpap1 deficiency leads to myopia through TGF-β-induced apoptosis in zebrafish

description: Additional file 6. Supplementary Table S5. Gene information of KEGG analysis.
DOI: 10.6084/m9.figshare.21368791.v1
title: Additional file 7 of Lrpap1 deficiency leads to myopia through TGF-β-induced apoptosis in zebrafish

description: Additional file 6. Supplementary Table S5. Gene information of KEGG analysis.
DOI: 10.5281/zenodo.10684800
title: Raw data to "(Almost) Everything is a Dicke model – Mapping correlated light-matter systems to the exactly solvable Dicke model"

description: This collection of data is complementary to the linked publication "(Almost) Everything is a Dicke model – Mapping correlated light-matter systems to the exactly solvable Dicke model", Andreas Schellenberger, Kai Phillip Schmidt, 2024, in preparation.


It contains all data used for all figures in the publication. The files are structured according to the figures as







Fig. 1: `visualization_model.blend`



Fig. 2: `spectrum_effective_Dicke_model.yaml`

Fig. 3: `phase_diagram_Dicke_Ising.yaml`

Fig. 4: `spectrum_Dicke_Ising_PNP.yaml`

Fig. 5: `spectrum_Dicke_Ising_ANP.yaml`

Fig. 6: `comparison_ED.yaml`

Fig. 7: `comparison_pcstpp.yaml`


For the pcst++ calculations, done in Sec. 3.4, we provide a separate file `coefficients_expectation_values_pcstpp.yaml` including the coefficients and expectation values for the investigated systems. For the coefficient calculation, the program openly available under GitHub was used (https://github.com/FAU-kpslab/pcstpp_CoefficientGenerator).


More information about the data is given as comments within the individual files.





For the file `visualization_model.blend` of the 3D model you need blender (https://www.blender.org) or another program that can handle `.blend` files.




For further information about the data we refer to the linked publication (in preparation).


If any question may arise, you are highly welcome to contact us (see, e.g., contact information on the publication).
DOI: 10.5281/zenodo.10684801
title: Raw data to "(Almost) Everything is a Dicke model – Mapping correlated light-matter systems to the exactly solvable Dicke model"

description: This collection of data is complementary to the linked publication "(Almost) Everything is a Dicke model – Mapping correlated light-matter systems to the exactly solvable Dicke model", Andreas Schellenberger, Kai Phillip Schmidt, 2024, in preparation.


It contains all data used for all figures in the publication. The files are structured according to the figures as



Fig. 1: `spectrum_effective_Dicke_model.yaml`

Fig. 2: `phase_diagram_Dicke_Ising.yaml`

Fig. 3: `spectrum_Dicke_Ising_PNP.yaml`

Fig. 4: `spectrum_Dicke_Ising_ANP.yaml`

Fig. 5: `comparison_ED.yaml`

Fig. 6: `comparison_pcstpp.yaml`


For the pcst++ calculations, done in Sec. 3.4, we provide a separate file `coefficients_expectation_values_pcstpp.yaml` including the coefficients and expectation values for the investigated systems. For the coefficient calculation, the program openly available under GitHub was used (https://github.com/FAU-kpslab/pcstpp_CoefficientGenerator).


More information about the data is given as comments within the individual files.


For further information about the data we refer to the linked publication (in preparation).


If any question may arise, you are highly welcome to contact us (see, e.g., contact information on the publication).
DOI: 10.5281/zenodo.10695534
title: Simulation and Measurement results for the Elliptically Shaped Aperiodic Antenna Arrays designed with the AAP formulation.

description: The, simulation and measurement, data used to validate the elliptical extension of the auxiliary array pattern (AAP) formulation synthesis technique.
DOI: 10.5281/zenodo.10695535
title: Simulation and Measurement results for the Elliptically Shaped Aperiodic Antenna Arrays designed with the AAP formulation.

description: The, simulation and measurement, data used to validate the elliptical extension of the auxiliary array pattern (AAP) formulation synthesis technique.
DOI: 10.6084/m9.figshare.11931690
title: Association analysis of potentially functional variants within 8p12 with schizophrenia in the Han Chinese population

description: Chromosome 8p12 was first identified as a schizophrenia (SCZ) risk locus in Chinese populations and replicated in European populations. However, the underlying functional variants still need to be further explored. In this study, we sought to identify plausible causal variants within this locus. A total of 386 potentially functional variants from 29 genes within the 8p12 locus were analysed in 2403 SCZ cases and 2594 control subjects in the Han Chinese population using Affymetrix customised genotyping assays. SHEsisplus was used for association analysis. A multiple testing corrected <i>p</i> value (false discovery rate (FDR)) &lt; .05 was considered significant, and an unadjusted <i>p</i> value &lt; .05 was considered nominal evidence of an association. We did not find significant associations between the tested variants and SCZ. However, nominal associations were found for rs201292574 (unadjusted <i>p</i> = .033, FDR <i>p</i> = .571; 95% confidence interval (CI): 0.265–0.945; TACC1, NP_006274.2:p.Ala211Thr) and rs45563241 (unadjusted <i>p</i> = .039, FDR <i>p</i> = .571; 95% CI: 1.023–1.866; a synonymous mutation in <i>ADRB3</i>). Our results provide limited evidence for the associations between variants from protein coding regions in 8p12 and SCZ in the Chinese population. Analyses of both coding and regulatory variants in larger sample sizes are required to further clarify the causal variants for SCZ with this risk locus.
DOI: 10.6084/m9.figshare.11931690.v1
title: Association analysis of potentially functional variants within 8p12 with schizophrenia in the Han Chinese population

description: Chromosome 8p12 was first identified as a schizophrenia (SCZ) risk locus in Chinese populations and replicated in European populations. However, the underlying functional variants still need to be further explored. In this study, we sought to identify plausible causal variants within this locus. A total of 386 potentially functional variants from 29 genes within the 8p12 locus were analysed in 2403 SCZ cases and 2594 control subjects in the Han Chinese population using Affymetrix customised genotyping assays. SHEsisplus was used for association analysis. A multiple testing corrected <i>p</i> value (false discovery rate (FDR)) &lt; .05 was considered significant, and an unadjusted <i>p</i> value &lt; .05 was considered nominal evidence of an association. We did not find significant associations between the tested variants and SCZ. However, nominal associations were found for rs201292574 (unadjusted <i>p</i> = .033, FDR <i>p</i> = .571; 95% confidence interval (CI): 0.265–0.945; TACC1, NP_006274.2:p.Ala211Thr) and rs45563241 (unadjusted <i>p</i> = .039, FDR <i>p</i> = .571; 95% CI: 1.023–1.866; a synonymous mutation in <i>ADRB3</i>). Our results provide limited evidence for the associations between variants from protein coding regions in 8p12 and SCZ in the Chinese population. Analyses of both coding and regulatory variants in larger sample sizes are required to further clarify the causal variants for SCZ with this risk locus.
DOI: 10.6084/m9.figshare.12980280.v1
title: Additional file 3 of A novel signature of two long non-coding RNAs in BRCA mutant ovarian cancer to predict prognosis and efficiency of chemotherapy

description: Additional file 3: Table S2. Univariate Cox proportional hazards regression analysis (P &lt; 0.05) of the differentially expressed lncRNAs profiling data in the dataset.
DOI: 10.6084/m9.figshare.12980283
title: Additional file 4 of A novel signature of two long non-coding RNAs in BRCA mutant ovarian cancer to predict prognosis and efficiency of chemotherapy

description: Additional file 4: Table S3. The signature risk score composed of 2 lncRNAs combinations in the dataset.
DOI: 10.6084/m9.figshare.12980283.v1
title: Additional file 4 of A novel signature of two long non-coding RNAs in BRCA mutant ovarian cancer to predict prognosis and efficiency of chemotherapy

description: Additional file 4: Table S3. The signature risk score composed of 2 lncRNAs combinations in the dataset.
DOI: 10.6084/m9.figshare.12980280
title: Additional file 3 of A novel signature of two long non-coding RNAs in BRCA mutant ovarian cancer to predict prognosis and efficiency of chemotherapy

description: Additional file 3: Table S2. Univariate Cox proportional hazards regression analysis (P &lt; 0.05) of the differentially expressed lncRNAs profiling data in the dataset.
DOI: 10.6084/m9.figshare.16650356
title: Additional file 1 of A predictive nomogram: a cross-sectional study on a simple-to-use model for screening 12-year-old children for severe caries in middle schools

description: Additional file 1. Overview of the questionnaire
DOI: 10.6084/m9.figshare.16650356.v1
title: Additional file 1 of A predictive nomogram: a cross-sectional study on a simple-to-use model for screening 12-year-old children for severe caries in middle schools

description: Additional file 1. Overview of the questionnaire
DOI: 10.6084/m9.figshare.5640370
title: Provenance analyses of early Mesozoic sediments in the Ningwu basin: Implications for the tectonic–palaeogeographic evolution of the northcentral North China Craton

description: This paper reports results from detrital zircon U–Pb geochronology, Hf isotopic geochemistry, sandstone modal analysis, and palaeocurrent analysis of the early Mesozoic strata within the Ningwu basin, China, with the aims of constraining the depositional ages and sedimentary provenances and shedding new light on the Mesozoic tectonic evolution of the northcentral North China Craton (NCC). The zircons from early Mesozoic sandstones are characterized by three major populations: Phanerozoic (late Palaeozoic and early Mesozoic), late Palaeoproterozoic (with a peak at approximately 1.8 Ga), and Neoarchaean (with a peak at approximately 2.5 Ga). Notably, three Phanerozoic zircons in the Early Triassic Liujiagou Formation were found to have positive <i>ε</i><sub>Hf</sub>(<i>t</i>) values and characteristics typical of zircons from the Central Asian Orogenic Belt (CAOB). Therefore, the CAOB began to represent the provenance of sediment in the sedimentary basins in the northern NCC no later than the Early Triassic (261 Ma), implying that the final amalgamation of the NCC and CAOB occurred before the Early Triassic. The U–Pb geochronologic and Hf isotopic results show that the Lower Middle Triassic sediments were mainly sourced from the Yinshan–Yanshan Orogenic Belt (YYOB), and that a sudden change in provenances occurred, shifting from a mixed YYOB and CAOB source in the Middle Jurassic to a primarily YYOB source in the Late Jurassic. The results of the sandstone modal analysis suggest that the majority of the samples from the Lower Middle Jurassic rocks were derived from either Continental Block or Recycled Orogen sources, whereas all the samples from the Upper Jurassic rocks were derived from Mixed sources. The change in source might be ascribed to the southward subduction and closure of the Okhotsk Ocean and the resulting intense uplift of the YYOB during the Late Jurassic. This uplift likely represents the start of the Yanshan Orogeny.
DOI: 10.6084/m9.figshare.5640370.v1
title: Provenance analyses of early Mesozoic sediments in the Ningwu basin: Implications for the tectonic–palaeogeographic evolution of the northcentral North China Craton

description: This paper reports results from detrital zircon U–Pb geochronology, Hf isotopic geochemistry, sandstone modal analysis, and palaeocurrent analysis of the early Mesozoic strata within the Ningwu basin, China, with the aims of constraining the depositional ages and sedimentary provenances and shedding new light on the Mesozoic tectonic evolution of the northcentral North China Craton (NCC). The zircons from early Mesozoic sandstones are characterized by three major populations: Phanerozoic (late Palaeozoic and early Mesozoic), late Palaeoproterozoic (with a peak at approximately 1.8 Ga), and Neoarchaean (with a peak at approximately 2.5 Ga). Notably, three Phanerozoic zircons in the Early Triassic Liujiagou Formation were found to have positive <i>ε</i><sub>Hf</sub>(<i>t</i>) values and characteristics typical of zircons from the Central Asian Orogenic Belt (CAOB). Therefore, the CAOB began to represent the provenance of sediment in the sedimentary basins in the northern NCC no later than the Early Triassic (261 Ma), implying that the final amalgamation of the NCC and CAOB occurred before the Early Triassic. The U–Pb geochronologic and Hf isotopic results show that the Lower Middle Triassic sediments were mainly sourced from the Yinshan–Yanshan Orogenic Belt (YYOB), and that a sudden change in provenances occurred, shifting from a mixed YYOB and CAOB source in the Middle Jurassic to a primarily YYOB source in the Late Jurassic. The results of the sandstone modal analysis suggest that the majority of the samples from the Lower Middle Jurassic rocks were derived from either Continental Block or Recycled Orogen sources, whereas all the samples from the Upper Jurassic rocks were derived from Mixed sources. The change in source might be ascribed to the southward subduction and closure of the Okhotsk Ocean and the resulting intense uplift of the YYOB during the Late Jurassic. This uplift likely represents the start of the Yanshan Orogeny.
DOI: 10.6084/m9.figshare.16650374
title: Additional file 1 of Genome-wide identification and expression profile under abiotic stress of the barley non-specific lipid transfer protein gene family and its Qingke Orthologues

description: Additional file 1: Table S1. Query genes for the barley nsLTP gene family screening.
DOI: 10.6084/m9.figshare.16650374.v1
title: Additional file 1 of Genome-wide identification and expression profile under abiotic stress of the barley non-specific lipid transfer protein gene family and its Qingke Orthologues

description: Additional file 1: Table S1. Query genes for the barley nsLTP gene family screening.
DOI: 10.6084/m9.figshare.24514789
title: Data and Results Summary Tables

description: Data and data analysis results summary spreadsheets for the RNA-seq and phosphoprotein datasets.
DOI: 10.6084/m9.figshare.16650395
title: Additional file 1 of Characterization and genomic analysis of the first Oceanospirillum phage, vB_OliS_GJ44, representing a novel siphoviral cluster

description: Additional file1: Table S1. Genome annotation of phage vB_OliS_GJ44.
DOI: 10.15156/bio/sh533023.07fu
title: SH533023.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh533024.07fu
title: SH533024.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2801243.08fu
title: SH2801243.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.