cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18265432
title: SGUFT G-closure V7 (ARF1): Adapter Registry & Replaceable Mapping Family with Hard Provenance (RUN_G_GRDEMO_0001_ARF1)

description: This record provides the V7 / ARF1 layer for SGUFT G-closure.V7 upgrades the V6 MPP1 “single frozen demo mapping” into a physically interpretable, replaceable, and auditable adapter family, so the macro closure output used by the GR-limit / FRW toy closure policy is no longer tied to one arbitrary construction.

What’s included (frozen upload set)

Uploaded files (frozen names):





RUN_G_GRDEMO_0001_ARF1_arf1_only_pack_v1.zip — minimal reproducibility pack (registry + adapters + outputs + audit/manifest)




RUN_G_GRDEMO_0001_ARF1_arf1_evidence_pack_v1.zip — full evidence pack (complete run directory including build logs/environment freeze)




V7_delivery_ARF1_summary_pack_v1.zip — human-readable index (arf1_summary.csv/json) + generator script



Core ARF1 components





Adapter registry (adapter_registry.json) with schema and per-adapter specs/params/invariants




Three minimal, interpretable adapters (toy but constrained and comparable):





AER1 — effective energy-density correction type




GEF1 — effective coupling / GeffG_{\mathrm{eff}}Geff modulation type




HKC1 — heat-kernel–coefficient proxy correction type






Per-adapter provenance locks (macro_provenance_<ADAPTER>.json)




Audit closed loop: audit.json, arf1/audit_arf1.json, and manifest_sha256.json



Policy / verdict (frozen)

For each adapter, PASS/FAIL depends only on:





hard provenance (hashlink) integrity against referenced manifests, and




FRW residual thresholds:





einstein_residual_max <= eps_E




constraint_residual_max <= eps_Cwith frozen thresholds eps_E = 2e-3, eps_C = 2e-3, plus completeness/manifest integrity.





To avoid “cherry-picking one mapping that passes,” the run-level ARF1 verdict requires at least 2 of 3 adapters to pass under the same frozen policy.

Related records (chain linkage)





Downstream policy reference: V5 (GR-limit recovery & FRW toy closure) — DOI 10.5281/zenodo.18259548




Provenance bridge layer: V6 (MPP1, proxy→true-pipeline provenance enforcement) — DOI 10.5281/zenodo.18264210




Upstream true-pipeline kernel artifacts:





V2 (KIP1 independent kernel / G2 upgrade) — DOI 10.5281/zenodo.18254308




V3 (window function + error budget freeze) — DOI 10.5281/zenodo.18255978




V4 (cross-scale continuity + batch verdict upgrade) — DOI 10.5281/zenodo.18256721
DOI: 10.5281/zenodo.18265433
title: SGUFT G-closure V7 (ARF1): Adapter Registry & Replaceable Mapping Family with Hard Provenance (RUN_G_GRDEMO_0001_ARF1)

description: This record provides the V7 / ARF1 layer for SGUFT G-closure.V7 upgrades the V6 MPP1 “single frozen demo mapping” into a physically interpretable, replaceable, and auditable adapter family, so the macro closure output used by the GR-limit / FRW toy closure policy is no longer tied to one arbitrary construction.

What’s included (frozen upload set)

Uploaded files (frozen names):





RUN_G_GRDEMO_0001_ARF1_arf1_only_pack_v1.zip — minimal reproducibility pack (registry + adapters + outputs + audit/manifest)




RUN_G_GRDEMO_0001_ARF1_arf1_evidence_pack_v1.zip — full evidence pack (complete run directory including build logs/environment freeze)




V7_delivery_ARF1_summary_pack_v1.zip — human-readable index (arf1_summary.csv/json) + generator script



Core ARF1 components





Adapter registry (adapter_registry.json) with schema and per-adapter specs/params/invariants




Three minimal, interpretable adapters (toy but constrained and comparable):





AER1 — effective energy-density correction type




GEF1 — effective coupling / GeffG_{\mathrm{eff}}Geff modulation type




HKC1 — heat-kernel–coefficient proxy correction type






Per-adapter provenance locks (macro_provenance_<ADAPTER>.json)




Audit closed loop: audit.json, arf1/audit_arf1.json, and manifest_sha256.json



Policy / verdict (frozen)

For each adapter, PASS/FAIL depends only on:





hard provenance (hashlink) integrity against referenced manifests, and




FRW residual thresholds:





einstein_residual_max <= eps_E




constraint_residual_max <= eps_Cwith frozen thresholds eps_E = 2e-3, eps_C = 2e-3, plus completeness/manifest integrity.





To avoid “cherry-picking one mapping that passes,” the run-level ARF1 verdict requires at least 2 of 3 adapters to pass under the same frozen policy.

Related records (chain linkage)





Downstream policy reference: V5 (GR-limit recovery & FRW toy closure) — DOI 10.5281/zenodo.18259548




Provenance bridge layer: V6 (MPP1, proxy→true-pipeline provenance enforcement) — DOI 10.5281/zenodo.18264210




Upstream true-pipeline kernel artifacts:





V2 (KIP1 independent kernel / G2 upgrade) — DOI 10.5281/zenodo.18254308




V3 (window function + error budget freeze) — DOI 10.5281/zenodo.18255978




V4 (cross-scale continuity + batch verdict upgrade) — DOI 10.5281/zenodo.18256721
DOI: 10.15468/dl.rjz46r
title: Occurrence Download

description: A dataset containing 16913 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spergularia marina"
 ]
}

 The dataset includes 16913 records from 305 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013494-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/9b1skj
title: Replication Data for: Mandate Complexity and UN Peacekeeping Contributions

description: Replication data for Mandate Complexity and UN Peacekeeping Contributions
DOI: 10.15468/dl.xjmqbj
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-106.4688 21.14913, -106.3188 21.14913, -106.3188 21.29913, -106.4688 21.29913, -106.4688 21.14913))"
 ]
}

 The dataset includes 113 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040516-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3mq2m8
title: Occurrence Download

description: A dataset containing 591 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is spilomicrus_review_manuscript_no23123"
 ]
}

 The dataset includes 591 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040517-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.unrjhe
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hippoglossoides platessoides",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1930",
 "Year is less than or equal to 1939"
 ]
}

 The dataset includes 39 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040518-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qavmv5
title: Occurrence Download

description: A dataset containing 472 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-106.3188 21.14913, -106.1688 21.14913, -106.1688 21.29913, -106.3188 21.29913, -106.3188 21.14913))"
 ]
}

 The dataset includes 472 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040520-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9r8d65
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hippoglossoides platessoides",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1940",
 "Year is less than or equal to 1949"
 ]
}

 The dataset includes 92 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040521-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqf282
title: Occurrence Download

description: A dataset containing 14092911 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is China"
 ]
}

 The dataset includes 14092911 records from 7383 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040426-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/g50t-3w79
title: Continental-scale predicted ecosystem condition for Australia using deep learning

description: These spatial datasets represent a continental-scale approach to ecosystem condition monitoring using Earth observations and deep learning. This was undertaken for the years 2010, 2015, 2020, 2021 and 2022 for Australia at 100 m resolution. For each predicted ecosystem condition dataset (e.g. predicted_ecosystem_condition_2022.tif), a condition score of 1 indicates at or near reference condition, where a condition score of 0 indicates a fully degraded condition. Accompanying the predicted ecosystem condition datasets are QGIS colour schema (.qml). We also include datasets on spatial and temporal model sensitivity, including mean absoluate error (MAE) of predicted ecosystem condition by bioregions, as well as standard deviation of each pixels predicted ecosystem condition value over time, for all years mapped.

These datasets are associated with a manuscript currently undergoing peer-review.
DOI: 10.15468/dl.78kntr
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rasbora meinkeni)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041545-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.82261/78sp-jc92
title: PPRET Inscriptions. Inscriptions pertaining to the Praetorian Prefects from 284 to 395 AD.
title: PPRET
DOI: 10.15468/dl.up3rt8
title: Occurrence Download

description: A dataset containing 16267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Neotinea tridentata"
 ]
}

 The dataset includes 16267 records from 160 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041544-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p6gbvg
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex conglomeratus",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041546-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ecrd9s
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex conglomeratus",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041548-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4rqfkv
title: Occurrence Download

description: A dataset containing 3995 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex conglomeratus",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3995 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041547-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fxr3e2
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Poecilia latipunctata)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 43 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041550-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16939235
title: mtDNA haplotype files
DOI: 10.15468/dl.tsc38u
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex conglomeratus",
 "Country is Bulgaria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041551-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.svcssa
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex conglomeratus",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041553-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wtawt7
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex conglomeratus",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041552-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29931419
title: Table 1-11

description: 表S1： 866个ARGs是从人类衰老基因组资源数据库 表S2：GO富集共获得493个结果。表S3： 8个途径被鉴定为与候选基因显着相关。表S4：GSVA共富集了67条KEGG途径。表S5：GSVA共富集了17条HALLMARKS通路。表S6：GSEA分析显示，BRD4富集于35条KEGG通路。表S7：GSEA分析显示，ERBB2富集于38条KEGG 通路。表S8： 22条信号通路被关键基因BRD4和ERBB2共同富集。表S9：框图中显示的前10个DIP。表S10：BRD4与蛋白质相互作用的结果。表S11：ERBB2与蛋白质相互作用的结果。
DOI: 10.6084/m9.figshare.29931419.v1
title: Table 1-11

description: 表S1： 866个ARGs是从人类衰老基因组资源数据库 表S2：GO富集共获得493个结果。表S3： 8个途径被鉴定为与候选基因显着相关。表S4：GSVA共富集了67条KEGG途径。表S5：GSVA共富集了17条HALLMARKS通路。表S6：GSEA分析显示，BRD4富集于35条KEGG通路。表S7：GSEA分析显示，ERBB2富集于38条KEGG 通路。表S8： 22条信号通路被关键基因BRD4和ERBB2共同富集。表S9：框图中显示的前10个DIP。表S10：BRD4与蛋白质相互作用的结果。表S11：ERBB2与蛋白质相互作用的结果。
DOI: 10.15468/dl.9k5dx8
title: Occurrence Download

description: A dataset containing 23723 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Anemone sylvestris"
 ]
}

 The dataset includes 23723 records from 273 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041554-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5ks6jh86
title: MassIVE MSV000098930 - Decoding phenotypic variability: A proteo-centric multi-omic approach elucidates host-pathogen interfaces
title: Cellular phenotypes emerge from intricate patterns of expressed molecules, their functions and molecular interactions across the layers of the central dogma. To unravel the mechanisms that associate molecular patterns to phenotypes and establish causal connections, researchers have harnessed a range of molecular profiling technologies and integrated multi-omic data in diverse model systems and clinical contexts. These approaches primarily contextualize measured molecular abundances and often overlook the multifaceted attributes of proteins that affect their functional state and thus extend beyond mere abundance-dependent effects. In our prior work, we introduced a suite of methods to reveal context-specific transcription factor-gene regulatory networks, kinase-substrate networks and protein interaction networks and leveraged them to gain deeper insights into transcriptional control, signaling and the biochemical state of cells, respectively. However, the complex interdependencies between these networks have not yet been systematically explored even though they are essential to advance the understanding of the adaptation of biological systems to conditions. Here we present evidence that multi-omic strategies relying on measured or inferred proxies for protein activity and context-specific networks yield deeper functional insights into molecular mechanisms underlying phenotypes, compared to approaches solely based on protein abundance. Utilizing our previously established model system, progressively differentiated instances of HeLa CCL2 and Kyoto cell lines, we explore subtype-specific molecular differences that impact protein complexes both functionally and quantitatively and result in two different quantitative phenotypes, cell doubling time and Salmonella Typhimurium infection susceptibility. Our approach strikes an unprecedented balance between mechanistic insights and experimental efficiency. Notably, our analysis underscores the pivotal role of inferred protein networks and protein complex activities in bridging molecular profiles to phenotypic outcomes and is therefore of general relevance for the increasing number of basic and translational projects for which multi-omic datasets are acquired.
DOI: 10.82261/fvq9-b273
title: The Monumental Inscriptions of Historic Cairo
DOI: 10.15468/dl.em7rcc
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Thoracocharax securis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 67 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041555-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8nxp4
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex conglomeratus",
 "Country is Ecuador",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041556-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f5zpmr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex conglomeratus",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041557-250811113504898/datasets/export for details.
DOI: 10.34810/data2422
title: Vernacular names of wild edible fungi in Catalan Linguistic Area

description: The Catalan Linguistic Area (CLA) is a mycophile territory where interest in traditional edible fungi is increasing due to their gastronomic interest. This dataset compile a list of edible fungi taxa identified in the CLA with their vernacular names.
DOI: 10.15468/dl.vxx5v5
title: Occurrence Download

description: A dataset containing 762 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex conglomeratus",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 762 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041558-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7e3de5
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phalloceros anisophallos)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041559-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.82261/eqd6-5m25
title: The Cult of Saints in Late Antiquity
title: CSLA
DOI: 10.15468/dl.3haa2c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex conglomeratus",
 "Country is Kyrgyzstan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041560-250811113504898/datasets/export for details.
DOI: 10.15468/dl.hutf6w
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex conglomeratus",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 102 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041561-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ayepq3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex conglomeratus",
 "Country is Pakistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041562-250811113504898/datasets/export for details.