DOI: 10.5281/zenodo.5914368
title: The Three Rs: Resolving Respiration Robotically in Shelf Seas

description: Ocean gliders were deployed to conduct 'virtual mooring’ profiles at a study site in the seasonally stratified central Celtic Sea (station CCS, 49° 24’ N, 8° 36’ W) (see Fig. 1) during spring 2015 (6th April to- 28th April, decimal day 95 to 117) and summer 2015 (15<sup>th</sup> July and- 2nd August, decimal day 195 to 213). The integrated approach adopted in this study, combining ship based and glider measurements enabled estimates of spatial gradients while also minimising tidal aliasing that would likely be introduced by long spatial transects with the glider. A Slocum (Teledyne Webb Research, Falmouth, USA) Ocean Microstructure Glider (OMG, see Palmer et al., 2015 for full details) was equipped with a MicroRider microstructure package (Rockland Scientific International) to measure turbulentthe microstructure of velocity shear, a Seabird SBE42 CTD sensor to measure temperature, salinity and pressure, and an Aanderaa 4831 oxygen optode to measure O<sub>2</sub> (precision 0.2 µmol kg<sup>-1</sup>). Measurements were taken within 5 m of the bed and 2 m of the surface on most dives, with each yo-yo profile taking approximately 20 minutes. Glider salinity data was corrected for thermal inertia following Palmer et al. (2015). The glider AA4831 optode is known to experience severe lag across strong oxygen gradients, and therefore oxygen data was corrected where possible for optode membrane lag following Bittig et al. (2014). Where optode lag across the oxycline was too great and so not correctable using this method, it was omitted and oxygen data from coinciding CTDs was used. In comparison to other oxygen optodes, the AA4831 has been documented by various scientific studies as being an extremely stable optode with low detectable drift ( &lt;0.5% yr<sup>-1</sup>) and high precision of &lt;0.2 µmol kg<sup>-1</sup> (Kortzinger et al., 2004; Nicholson et al., 2008; Johnson et al., 2010; Champenois & Borges, 2012). Optode drift was calculated in this study by comparing discrete Winkler-analysed samples taken at deployment and recovery of the gliders, identifying a downward drift of 0.001% d<sup>-1</sup>, in close agreement with quoted manufacturer values. Glider sensors (temperature, salinity and ) were calibrated against nearby ship CTD profiles (CTD calibrated 1 month prior to cruise, SBE 43 precision = 2% of saturation) and discrete water samples collected within 3 hours and 2 km of glider deployment and recovery times and glider position, respectively, as part of the Shelf Sea Biogeochemistry programme (<em>RRS Discovery</em>, DY029 and DY033). Error estimates for the total change in (µmol kg<sup>-1</sup>) were calculated as the sum of the optode precision (0.2 µmol kg<sup>-1</sup>) and drift over the entire respective deployments (&lt;0.1 µmol kg<sup>-1</sup>). Currents, tides, salinity and temperature were monitored throughout the glider deployments by a mooring at the CCS study site, which was equipped with an acoustic current profiler (ADCP), salinometer and thermistors that provided near-continuous data (Wihsgott et al., 2019; Ruiz-Castello et al., 2019).