cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8ev6ha
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is one of (Desert Botanical Garden Herbarium, The New York Botanical Garden Herbarium (NY), Catálogo electrónico de especímenes depositados en el Herbario de la Universidad de Texas en Austin, Fase IV (Ejemplaresimagenes), Texas Tech University, E. L. Reed Herbarium, Plant Resources Center, Tropicos MO Specimen Data, University of New Mexico Herbarium, Arizona State University Vascular Plant Herbarium, Flora y vegetación de la Sierra de San Carlos en el municipio de San Nicolás, Digitalización de la colección científica del Herbario de Querétaro \"Dr. Jerzy Rzedowski\" QMEX)",
 "Geometry POLYGON((-127.75475 41.56957,-99.8028 0,-63.25025 38.7027,-127.75475 41.56957))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (e1f6195c-b21b-4601-809e-bdf0488ee9a4, ae447c50-b8a8-11d8-92a4-b8a03c50a862)",
 "TaxonKey is Yucca treculeana Carrière"
 ]
}

 The dataset includes 40 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140686-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xzztkn
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onychorhynchus occidentalis (P.L.Sclater, 1860)"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019663-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e2yfga
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America)",
 "BasisOfRecord is one of (Specimen)",
 "Year is greater than or equal to 1990",
 "TaxonKey is Halyomorpha halys (Stål, 1855)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 51 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010394-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmz6c4
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hedysarum vanense Hedge & Hub.-Mor."
 ]
}

 The dataset includes 13 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018309-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3nlb7t
title: Occurrence Download

description: A dataset containing 17697 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyla cinerea (Schneider, 1799)"
 ]
}

 The dataset includes 17697 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019663-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nnznjc
title: Occurrence Download

description: A dataset containing 759 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Burhinus oedicnemus",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "Geometry POLYGON((-18.60675 27.38308,\n -15.03247 27.38308,\n -15.03247 29.16152,\n -18.60675 29.16152,\n -18.60675 27.38308))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 },
 "DistanceFromCentroidInMeters is greater than or equal to 1000",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015",
 "Month is not null"
 ]
}

 The dataset includes 759 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027921-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5v98052m
title: MassIVE MSV000100098 - Glycoproteome Characterization of Gastric Cancer Derived Extracellular Matrix
title: In this study, we conducted glycoproteomic analyses of ECM-enriched fractions derived from gastric tumor tissues and matched adjacent normal tissues obtained from 56 patients.
DOI: 10.6084/m9.figshare.30785099
title: Table 3. Positive signal strength for kidney injuries associated with CNIs at the PT level

description: This document presents specific signal detection results for adverse events under specific preferred terminology (PT) conditions.
DOI: 10.6084/m9.figshare.30785099.v1
title: Table 3. Positive signal strength for kidney injuries associated with CNIs at the PT level

description: This document presents specific signal detection results for adverse events under specific preferred terminology (PT) conditions.
DOI: 10.17026/ar/mdcsoy
title: PAN-00105041 - coin/coin-related, Constantinus II (337-340), nummus

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00105041&lt;/p&gt;
description: Modified: 2025-05-12T08:35:12+02:00
DOI: 10.15468/dl.qe8sf3
title: Occurrence Download

description: A dataset containing 54356 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Spain, Portugal)",
 "TaxonKey is Puffinus mauretanicus",
 "Year 1970-2025"
 ]
}

 The dataset includes 54356 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027849-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17542027
title: Progress of Key Performance Indicator Development over time in Horizon project Wasabi

description: This dataset describes the development over time for the Key Performance Indicator for a set of enterprises participating in a Horiozon Europe project (Wasabi).
DOI: 10.5281/zenodo.17542026
title: Progress of Key Performance Indicator Development over time in Horizon project Wasabi

description: This dataset describes the development over time for the Key Performance Indicator for a set of enterprises participating in a Horiozon Europe project (Wasabi).
DOI: 10.15468/dl.f4yk3q
title: Occurrence Download

description: A dataset containing 559 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ectophylla alba",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 559 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027922-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30786123
title: Effect of microwave-assisted magnesium oxide blanching and hybrid drying on color retention in dried okra

description: This study aimed to investigate the effects of microwave-assisted magnesium oxide (MgO) blanching combined with hybrid drying on color retention, drying kinetics, and quality attributes of dried okra. Fresh okra (cv. Lady’s Finger) was subjected to five pre-treatment conditions: (1) untreated (F-Okra), (2) hot-water blanching at 90°C for 3 min (B-Okra), (3) hot-water blanching in 0.1% MgO solution at 90°C for 3 min (B+MgO-Okra), (4) microwave blanching at 720W for 2 min (MW-B-Okra), and (5) microwave-assisted blanching with 0.1% MgO at 900W for 5 min (MW-B+MgO-Okra). Samples were subsequently dried using three methods: tray drying (TD: 60–80°C), microwave drying (MW: 450-900W), and hybrid microwave-tray drying (MW 900W for 5 min followed by TD at 60–80°C). Drying kinetics were evaluated using eight mathematical models, with the Logarithmic and Midilli-Kucuk models providing the best fit (R<sup>2</sup> = 0.999). Moisture content water activity, and color parameters (L*, a*, b*, and a*/b* ratio) were measured. Results indicated that pre-treatment method and drying conditions significantly influenced (<i>p</i> &lt; .05) drying time, final moisture content, and color preservation. The combined microwave-assisted MgO blanching followed by hybrid drying at 70°C reduced total drying time from 570 to 210 min while maintaining the highest greenness index (a*/b* = -1.62) and achieving low water activity (aw = 0.44), suitable for microbial stability. Sensory evaluation revealed acceptable quality compared to commercial products. This integrated approach demonstrates a feasible, energy-efficient, and oil-free strategy for developing crispy, visually appealing okra snacks with improved processing efficiency and enhanced chlorophyll retention.
DOI: 10.6084/m9.figshare.30786123.v1
title: Effect of microwave-assisted magnesium oxide blanching and hybrid drying on color retention in dried okra

description: This study aimed to investigate the effects of microwave-assisted magnesium oxide (MgO) blanching combined with hybrid drying on color retention, drying kinetics, and quality attributes of dried okra. Fresh okra (cv. Lady’s Finger) was subjected to five pre-treatment conditions: (1) untreated (F-Okra), (2) hot-water blanching at 90°C for 3 min (B-Okra), (3) hot-water blanching in 0.1% MgO solution at 90°C for 3 min (B+MgO-Okra), (4) microwave blanching at 720W for 2 min (MW-B-Okra), and (5) microwave-assisted blanching with 0.1% MgO at 900W for 5 min (MW-B+MgO-Okra). Samples were subsequently dried using three methods: tray drying (TD: 60–80°C), microwave drying (MW: 450-900W), and hybrid microwave-tray drying (MW 900W for 5 min followed by TD at 60–80°C). Drying kinetics were evaluated using eight mathematical models, with the Logarithmic and Midilli-Kucuk models providing the best fit (R<sup>2</sup> = 0.999). Moisture content water activity, and color parameters (L*, a*, b*, and a*/b* ratio) were measured. Results indicated that pre-treatment method and drying conditions significantly influenced (<i>p</i> &lt; .05) drying time, final moisture content, and color preservation. The combined microwave-assisted MgO blanching followed by hybrid drying at 70°C reduced total drying time from 570 to 210 min while maintaining the highest greenness index (a*/b* = -1.62) and achieving low water activity (aw = 0.44), suitable for microbial stability. Sensory evaluation revealed acceptable quality compared to commercial products. This integrated approach demonstrates a feasible, energy-efficient, and oil-free strategy for developing crispy, visually appealing okra snacks with improved processing efficiency and enhanced chlorophyll retention.
DOI: 10.6084/m9.figshare.30786129
title: S2: Formation and preservation of carpholite in low blueschist facies assemblages: Implications for the H<sub>2</sub>O budget at the seismogenic zone depth

description: Table S1. List of the raw chemical analysis before to be treated by authors as explained in the related papers and P-T mode diagram
DOI: 10.6084/m9.figshare.30786129.v1
title: S2: Formation and preservation of carpholite in low blueschist facies assemblages: Implications for the H<sub>2</sub>O budget at the seismogenic zone depth

description: Table S1. List of the raw chemical analysis before to be treated by authors as explained in the related papers and P-T mode diagram
DOI: 10.17026/ar/jjla4x
title: PAN-00016224 - strap end

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00016224&lt;/p&gt;
description: Modified: 2025-08-14T13:02:56+02:00
DOI: 10.17026/ar/ijqkmi
title: PAN-00172102 - stern rudder (wood)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00172102&lt;/p&gt;
description: Modified: 2025-06-09T14:26:28+02:00
DOI: 10.15468/dl.masxma
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eidolon dupreanum",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 132 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027923-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30786119
title: A novel integrative machine learning-based prognostic model reveals lactylation regulation in hepatocellular carcinoma progression

description: Hepatocellular carcinoma (HCC) is one of the most common malignant liver tumor with poor clinical outcomes. Accumulated evidence has demonstrated lactylation plays a vital role in the metabolic reprogramming. However the mechanisms underlying the role of lactylation in the regulation of HCC progression remain largely unknown. This study aims to construct a prognostic model based on lactylation-related metabolism genes, and further explore its prognostic significance and biological function in HCC.
DOI: 10.6084/m9.figshare.30786119.v1
title: A novel integrative machine learning-based prognostic model reveals lactylation regulation in hepatocellular carcinoma progression

description: Hepatocellular carcinoma (HCC) is one of the most common malignant liver tumor with poor clinical outcomes. Accumulated evidence has demonstrated lactylation plays a vital role in the metabolic reprogramming. However the mechanisms underlying the role of lactylation in the regulation of HCC progression remain largely unknown. This study aims to construct a prognostic model based on lactylation-related metabolism genes, and further explore its prognostic significance and biological function in HCC.
DOI: 10.3886/e240942
title: HIFLD OPEN US County Boundaries

description: This dataset represents the primary legal divisions of U.S. states, commonly referred to as counties. In Louisiana these divisions are known as parishes; in Alaska, which has no counties, equivalent entities include organized boroughs, city and boroughs, municipalities, and census areas, delineated cooperatively by the State of Alaska and the Census Bureau. Several states include independent cities functioning as county equivalents. The Census Bureau also includes county-equivalent entities in U.S. territories such as municipios in Puerto Rico, districts and islands in American Samoa, municipalities in the Northern Mariana Islands, and islands in the U.S. Virgin Islands. The dataset provides consistent county-level geographic units for national data presentation.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025.
DOI: 10.3886/e240942v1
title: HIFLD OPEN US County Boundaries

description: This dataset represents the primary legal divisions of U.S. states, commonly referred to as counties. In Louisiana these divisions are known as parishes; in Alaska, which has no counties, equivalent entities include organized boroughs, city and boroughs, municipalities, and census areas, delineated cooperatively by the State of Alaska and the Census Bureau. Several states include independent cities functioning as county equivalents. The Census Bureau also includes county-equivalent entities in U.S. territories such as municipios in Puerto Rico, districts and islands in American Samoa, municipalities in the Northern Mariana Islands, and islands in the U.S. Virgin Islands. The dataset provides consistent county-level geographic units for national data presentation.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025.
DOI: 10.17026/ar/rmj0mn
title: PAN-00126717 - coin/coin-related, Trajanus (98-117), dupondius

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00126717&lt;/p&gt;
description: Modified: 2025-09-30T07:48:03+02:00
DOI: 10.15468/dl.jyrde8
title: Occurrence Download

description: A dataset containing 1349 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Anastatica hierochuntica"
 ]
}

 The dataset includes 1349 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027924-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.468aub
title: Occurrence Download

description: A dataset containing 3301 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eidolon helvum",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 3301 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027925-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23664/ahri.sesikhona.activityspace.survey
title: AHRI:Sesikhona! (we are here) Activity Space
DOI: 10.15468/dl.pmeasz
title: Occurrence Download

description: A dataset containing 2594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "GadmGid is GBR.1.20_1",
 "TaxonKey is Macroglossum stellatarum",
 "Year 1975-2025"
 ]
}

 The dataset includes 2594 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027926-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17738668
title: Reliable Identification of Homodimers Using AlphaFold

description: Data for paper "Reliable Identification Of Homodimers using AlphaFold". 

Abstract:

Protein-protein interactions are central for understanding biological processes. The ability to predict interaction partners is extremely valuable for avoiding costly, time-consuming experiments. It has been shown that AlphaFold has an unsurpassed ability to accurately evaluate interacting protein pairs. However, a protein can also form homomeric interactions, i.e. interact with itself. We found that AlphaFold yielded a significantly higher false-positive rate for identifying homodimers than for heterodimers. True Positive Rate (TPR) at 1% False Positive Rate (FPR) drops from 63% for heterodimers to 18% for homodimers. When we investigated the high-scoring false positives, i.e., non-homodimers with high AlphaFold scores when predicted as such, we found that their homologs were enriched for homomultimeric proteins. Using a simple logistic regression model that combines AlphaFold scores with structural and homology information, we increased the TPR (at 1% FPR) to 42 +/- 8% (5-fold cross-validation) from 19%. If we excluded the homology information, we achieved a TPR of 28 +/- 7%, which is still better than using AlphaFold metrics. 

alphafold-homodimers-zenodo.tar.gz:

The tar-file includes all the msas used for the protein-protein interaction prediction with AlphaFold. It also includes all predicted structures, fasta-files as well as the input_jsons used for AlphaFold3 structure predictions. 

Software: 

For software related to the publication see: https://github.com/SarahND97/alphafold-homodimers
DOI: 10.5281/zenodo.17738667
title: Reliable Identification of Homodimers Using AlphaFold

description: Data for paper "Reliable Identification Of Homodimers using AlphaFold". 

Abstract:

Protein-protein interactions are central for understanding biological processes. The ability to predict interaction partners is extremely valuable for avoiding costly, time-consuming experiments. It has been shown that AlphaFold has an unsurpassed ability to accurately evaluate interacting protein pairs. However, a protein can also form homomeric interactions, i.e. interact with itself. We found that AlphaFold yielded a significantly higher false-positive rate for identifying homodimers than for heterodimers. True Positive Rate (TPR) at 1% False Positive Rate (FPR) drops from 63% for heterodimers to 18% for homodimers. When we investigated the high-scoring false positives, i.e., non-homodimers with high AlphaFold scores when predicted as such, we found that their homologs were enriched for homomultimeric proteins. Using a simple logistic regression model that combines AlphaFold scores with structural and homology information, we increased the TPR (at 1% FPR) to 42 +/- 8% (5-fold cross-validation) from 19%. If we excluded the homology information, we achieved a TPR of 28 +/- 7%, which is still better than using AlphaFold metrics. 

alphafold-homodimers-zenodo.tar.gz:

The tar-file includes all the msas used for the protein-protein interaction prediction with AlphaFold. It also includes all predicted structures, fasta-files as well as the input_jsons used for AlphaFold3 structure predictions. 

Software: 

For software related to the publication see: https://github.com/SarahND97/alphafold-homodimers
DOI: 10.17026/ar/3k6qzn
title: PAN-00105785 - coin/coin-related, Appius Claudius Pulcher, T. Manlius Mancinus en Q. Urbinius, denarius

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00105785&lt;/p&gt;
description: Modified: 2025-07-07T07:54:13+02:00
DOI: 10.15468/dl.cfv3av
title: Occurrence Download

description: A dataset containing 3372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Oman",
 "TaxonKey is Testudines"
 ]
}

 The dataset includes 3372 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027927-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktsnvy
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elaphodus cephalophus",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 116 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027928-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.py395y
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((14.25344 50.85034,14.30598 50.84887,14.32333 50.88406,14.27188 50.89989,14.23259 50.88839,14.2227 50.88025,14.25344 50.85034))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (August, July)",
 "OccurrenceStatus is Present",
 "Year is 2022"
 ]
}

 The dataset includes 327 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027929-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4w8pmx
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is ITA.15_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ophioglossum lusitanicum"
 ]
}

 The dataset includes 21 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027930-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/ho1htj
title: PAN-00120998 - terra sigillata cup type Drag. 33

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00120998&lt;/p&gt;
description: Modified: 2025-05-08T16:03:54+02:00