cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.v83vgs
title: Occurrence Download

description: A dataset containing 52156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Haematopus moquini Bonaparte, 1856"
 ]
}

 The dataset includes 52156 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044547-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w6882d
title: Occurrence Download

description: A dataset containing 1713 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((76.5794 27.50119, 76.67615 27.50119, 76.67615 27.61973, 76.5794 27.61973, 76.5794 27.50119))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 1713 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044550-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.73s34h
title: Occurrence Download

description: A dataset containing 462 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((76.29831 26.86693, 76.39109 26.86693, 76.39109 26.92607, 76.29831 26.92607, 76.29831 26.86693))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 462 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044551-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnat4r
title: Occurrence Download

description: A dataset containing 1286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Grus paradisea (Lichtenstein & Aah, 1793)"
 ]
}

 The dataset includes 1286 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044552-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f8dm4z
title: Occurrence Download

description: A dataset containing 7664 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Haliaeetus pelagicus (Pallas, 1811)"
 ]
}

 The dataset includes 7664 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044555-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p9etg2rp
title: Clusters of monthly streamflow values with similar temporal patterns at 555 HCDN sites for the period 1981 to 2019

description: This data release identifies 555 Hydro-Climatic Data Network (HCDN) streamgages in the conterminous United States during the period 1981-2019 which were grouped according to similarity in their temporal patterns of monthly streamflow.
DOI: 10.5281/zenodo.12547725
title: Building pseudo latewood tree ring records for De Soto National Forest using MPI-ESM synthetic storms for the past millennium

description: This release contains the past millennium synthetic storm dataset (MPI-ESM) passing De Soto National Forest (31.08°,-89.08°) and scripts needed to develop pseudo tree ring and sediment records used in Wallace et al. (2024).
DOI: 10.5281/zenodo.12646943
title: Validation and Test Datasets for "High-resolution AI image dataset for diagnosing oral submucous fibrosis and squamous cell carcinoma"
title: ORCHID-val-data
title: ORCHID-test-data

description: This deposition contains the validation and test dataset for our study "High-resolution AI image dataset for diagnosing oral submucous fibrosis and squamous cell carcinoma".

The training dataset for this study can be found at the following DOI: [10.5281/zenodo.12636426].
DOI: 10.5281/zenodo.13356244
title: 2023 Mt. Hood Glacier Margins for "Unprecedented Twenty-First Century Glacier Loss on Mt. Hood, Oregon, U.S.A."
DOI: 10.5281/zenodo.5729197
title: Genotyping and phenotyping data for Genome-wide analyses of body fat reserves in ewes

description: <strong>Among the adaptive capacities of animals, the management of energetic body reserves (BR) through the BR mobilization and accretion processes (BR dynamics, BRD) has become an increasingly valuable attribute for livestock sustainability, allowing animals to cope with more variable environments. BRD has previously been reported to be heritable in ruminants. In the present study, we conducted genome-wide studies (GWAS) in sheep to determine genetic variants associated with BRD. BR levels and BR changes over time were obtained through body condition score measurements at eight physiological stages throughout each productive cycle in Romane ewes (n=1034) and were used as phenotypes for GWAS. After quality controls and imputation, 48,513 single nucleotide polymorphisms (SNP) were included in the GWAS. Among the QTLs identified, a major QTL associated with BR levels during pregnancy and lactation was identified on chromosome 1. In this region, several significant SNPs mapped to the leptin receptor gene (LEPR), among which one SNP mapped to the coding sequence. The point mutation induces the p.P1019S substitution in the cytoplasmic domain, close to tyrosine phosphorylation sites. The frequency of the SNP associated with increased BR levels was 32%, and the LEPR genotype explained up to 5% of the variance of the trait. These results provide strong evidence for involvement of LEPR in the regulation of BRD in sheep and highlight it as a major candidate for improving adaptive capacities.</strong>
description: Data files are provided in Plink format ( https://www.cog-genomics.org/plink).
DOI: 10.6084/m9.figshare.26936206
title: Supplementary Material for: Recurrence of hepatocellular carcinoma after liver transplantation: clinical patterns and hierarchy of salvage treatments

description: STRUCTURED ABSTRACT
Introduction: The multiparametric nature of recurrence of hepatocellular carcinoma (HCC) after liver transplantation (LT) still leads to uncertainty with its practical management. This study aims to characterize the main post-transplant recurrence patterns of HCC and to explore the therapeutic modalities targeting recurrence.
Methods: Consecutive patients who underwent LT for HCC at a single tertiary center were analyzed. The time from first recurrence to death was investigated for each site of presentation. The impact of each recurrence targeted treatment on survival was studied.
Results: Of 660 patients with HCC, any recurrence occurred in 96 (15.4%) patients with a median time to recurrence of 20.0 months (95% CI 15.6-23.8). Patients recurred across different patters including solitary distant locations (30.8%, n=28), liver only (24.2%, n=22), lung (18.7%, n=17), multiorgan disease (17.6%, n=16), and bone (8.8%, n=8). Multiorgan and bone recurrences had the poorest survival, while solitary distant lesions and pulmonary recurrences had the best outcomes. Each treatment modality carried a distinctive survival.
Conclusions: Patients recurred across 3 patterns with different prognostic implications. The benefit of each treatment option on distinct recurrence patterns appears to be influenced by the biological behavior inherent in the recurrence pattern itself.
DOI: 10.17632/6s8km8w452.1
title: Easily Prepared Graphene Anchored PVDF-hydrolized Cellulose Photocatalytic Composite

description: Graphene-like metal oxide photocatalyst (G-Mox) was prepared in a low-cost single step carbonization process. Photocatalytic polymeric composites were prepared by phase separation technique. Hydrolyzed cellulose-PVDF (Phc) solution prepared from textile waste was mixed with PVDF. Physicochemical and structural properties of powder and composites were characterized by X ray diffractometer, SEM, FT-IR analysis. Photoluminescence and surface area analysis of photocatalyst were carried out with contact angle measurements. The photocatalytic properties of the synthesized composites were evaluated using the methyl orange (MO) as a model pollutant. The highest decolorization percentage was obtained as 91.8% with the Phc-20 composite. 
XRD diffraction patterns provide very descriptive information about the prepared composite.
2 theta=37, 48, 55 and 68º, which indicate TiO2 existence of the anatase phase in high compatibility with JCPDS files Anatase:21-1272 in the G-TiO2 and Ge-TiO2-Fe structure. The presence of cellulose in the diffraction pattern of Phc is evident from the sharp 22.7º with peaks in the range of 14-17º. In addition, the distinct peaks observed around 18 and 20º indicate the contribution of alpha phase PVDF. The crystal structure of the Phc composite showed great similarity to the our previous study. In the composites, starting from Phc-5, the 2theta=27º graphite peak emerged with TiO2 and graphene peaks. This value became most evident in Phc-30, which contains the highest solid.
DOI: 10.3886/e191762v1
title: Data and Code for: "When Dad Can Stay Home: Fathers’ Workplace Flexibility and Maternal Health"

description: Code accompanying article with the following abstract: We study how fathers’ access to workplace flexibility affects maternal postpartum health. We use variation
from a Swedish reform that granted new fathers more flexibility to take intermittent parental leave during
the postpartum period and show that increasing the father’s temporal flexibility—and thereby his ability
to be present at home together with the mother—reduces the incidence of maternal postpartum health
complications. Our results suggest that mothers bear part of the burden from a lack of workplace flexibility
for men because a father’s inability to respond to domestic shocks exacerbates the maternal health cost of
childbearing.
DOI: 10.6084/m9.figshare.24123315.v4
title: Underlying data supporting the results of the manuscript "Antimicrobial and Anti-Virulence Potential of Plant Phenolic Compounds Against <i>Vibrio parahaemolyticus"</i>

description: Underlying data from the manuscript "Antimicrobial and Anti-Virulence Potential of Plant Phenolic Compounds Against <i>Vibrio parahaemolyticus".</i>
DOI: 10.6084/m9.figshare.26304115
title: MIST: Reusability Report

description: Data for the figures used in the reusability report of MIST
DOI: 10.7289/v5kh0kk6
title: NOAA GOES-R Series Geostationary Lightning Mapper (GLM) Level 2 Lightning Detection: Events, Groups, and Flashes
DOI: 10.5281/zenodo.12065447
title: Code for GMD publication - Introducing Graupel Density Prediction in Weather Research and Forecasting (WRF) Double-Moment 6-Class (WDM6) Microphysics and Evaluation of the Modified Scheme During the ICE-POP Field Campaign
title: Code for GMD publication - Simulated Prognostic approach of graupel density in a bulk-type cloud microphysics scheme and evaluation during the ICE-POP field campaign.

description: Code for GMD publication - Introducing Graupel Density Prediction in Weather Research and Forecasting (WRF) Double-Moment 6-Class (WDM6) Microphysics and Evaluation of the Modified Scheme During the ICE-POP Field Campaign

In this repository, we include the source codes for WRF microphysics parameterization used in the GMD publication "Simulated Prognostic approach of graupel density in a bulk-type cloud microphysics scheme and evaluation during the ICE-POP field campaign."

The revised WDM6 code, which predicts the graupel density and the original WDM6 code are uploaded.  

Each code is modified so that detailed microphysical processes can be found in wrfout.

Namelist files shows the namelist.input for each case.

Furthermore, scripts for figures in the manuscript are included, along with wrfout files.
DOI: 10.6084/m9.figshare.26093389
title: Underlying data

description: Occurrence of pathogenic <i>Candida</i> species in artisanal cheeses from Boyacá, Colombia, including fluconazole resistant isolates
DOI: 10.1285/i20356609v16i3p451
title: The Dark Side of Solidarity: Ambivalences and Double Standards in the Ukrainian Refugee Crisis in Italy

description: The Russian invasion of Ukraine in 2022 and the subsequent arrival of people fleeing the war prompted remarkable mobilizations and responses throughout the EU. By focusing on the Italian context and, more specifically, on the case of the Piedmont Region, this paper conducts critical reflection on the different forms and expressions of solidarity that emerged at both the institutional and civic society levels. The paper builds on qualitative interviews carried out between February 2022 and March 2023 with representatives of public institutions, third-sector organisations, and associations, and it intends to: I) frame the different expressions of solidarity in light of recent changes in the regulatory arrangements of the institutional asylum system; II) explore the relationship between formal and informal reception with respect to equity in terms of conditions, opportunities, and quality of the services provided; III) discuss the implications of the double standards and the ambivalent role of solidarity towards a specific category of refugees, especially as regards its sustainability over time and the growing fragmentation of the refugee reception systems.
DOI: 10.17189/1520354
title: ODYSSEY THEMIS IR PBT V2.0
DOI: 10.17608/k6.auckland.25106918.v1
title: Soilsafe Aotearoa Post-participation Engagement Survey Results

description: In 2023-2024 summer, Soilsafe Aotearoa followed up with our soil heavy metals screening participants to see how receiving screening results affected participants' actions. This is a cleaned version of the resulting dataset.
DOI: 10.25493/486n-966
title: Swanson's “Brain Maps: Structure of the Rat Brain” (4th edition) spatially registered to the Waxholm Space atlas of the rat brain

description: The dataset contains location metadata defining the spatial registration of the 4th edition of “Brain Maps: Structure of the Rat Brain” (Swanson, 2018) to the MRI/DTI image volume of the Waxholm Space atlas of the rat brain (Version 1.01; RRID:SCR017124). The stereotaxic atlas by Swanson contains 73 revised coronal diagrams from an adult Sprague-Dawley rat. The schematic diagram images were spatially registered to the Waxholm Space atlas of the rat brain. The dataset consists of .png images of the atlas plates and an accompanying .xml file with spatial metadata that can be opened in the QuickNII tool (RRID:SCR016854) to view overlay images of the two atlases. The procedure for this is described in the data descriptor file. The dataset can be used to inspect how regions delineated in the two atlases spatially relate to each other.
DOI: 10.25493/apwv-37h
title: Paxinos & Watson’s “The Rat Brain in Stereotaxic Coordinates” (7th edition) spatially registered to the Waxholm Space atlas of the rat brain

description: The dataset contains location metadata defining the spatial registration of the 7th edition of “The Rat Brain in Stereotaxic Coordinates” (Paxinos & Watson, 2018) to the MRI/DTI image volume of the Waxholm Space atlas of the rat brain (Version 1.01; RRID:SCR017124). The stereotaxic atlas of Paxinos & Watson contains 161 revised coronal diagrams from a young adult Wistar rat. The schematic diagram images were scanned from the book version and spatially registered to the Waxholm Space atlas of the rat brain. The dataset consists of an .xml file with spatial metadata that can be opened in the QuickNII tool (RRID:SCR016854) to view overlay images of the two atlases. The atlas images are not shared due to copyright restrictions, but the user can use own images together with the .xml file provided here, following the procedure provided in the accompanying data descriptor file. The dataset can be used for direct comparison of anatomical landmarks and spatial correspondences of brain region delineated in the two atlases.
DOI: 10.25493/c63a-fey
title: Atlas of normal rat brain cyto- and myeloarchitecture

description: Brain-wide serial microscopic images of coronal and sagittal rat brain sections stained with thionine to visualize cytoarchitecture, or with Woelche's myelin staining method to visualize myeloarchitecture.
DOI: 10.25493/kq5k-s0d
title: Paxinos & Watson’s “The Rat Brain in Stereotaxic Coordinates” (5th edition) spatially registered to the Waxholm Space atlas of the rat brain

description: The dataset contains location metadata defining the spatial registration of the 5th edition of “The Rat Brain in Stereotaxic Coordinates” (Paxinos & Watson, 2005) to the MRI/DTI image volume of the Waxholm Space atlas of the rat brain (Version 1.01; RRID:SCR017124). The stereotaxic atlas of Paxinos & Watson contains a new set of 161 coronal diagrams from a young adult Wistar rat. The schematic diagram images were spatially registered to the Waxholm Space atlas of the rat brain. The dataset consists of an .xml file with spatial metadata that can be opened in the QuickNII tool (RRID:SCR016854) to view overlay images of the two atlases. The atlas images are not shared due to copyright restrictions, but the user can use own images together with the .xml file provided here, following the procedure provided in the accompanying data descriptor file. The dataset can be used for direct comparison of anatomical landmarks and spatial correspondences of brain region delineated in the two atlases.
DOI: 10.25493/w3r1-r4a
title: Paxinos & Watson’s “The Rat Brain in Stereotaxic Coordinates” (4th edition) spatially registered to the Waxholm Space atlas of the rat brain

description: The dataset contains location metadata defining the spatial registration of the 4th edition of “The Rat Brain in Stereotaxic Coordinates” (Paxinos & Watson, 1998) to the MRI/DTI image volume of the Waxholm Space atlas of the rat brain (Version 1.01; RRID:SCR017124). The stereotaxic atlas of Paxinos & Watson contains two new coronal drawings, as well as revised delineations of 10 sagittal and 27 horizontal diagrams from young adult Wistar rats. The schematic diagram images were spatially registered to the Waxholm Space atlas of the rat brain. The dataset consists of an .xml file with spatial metadata that can be opened in the QuickNII tool (RRID:SCR016854) to view overlay images of the two atlases. The atlas images are not shared due to copyright restrictions, but the user can use own images together with the .xml file provided here, following the procedure provided in the accompanying data descriptor file. The dataset can be used for direct comparison of anatomical landmarks and spatial correspondences of brain region delineated in the two atlases.
DOI: 10.25493/xq8j-tne
title: Paxinos & Watson’s “The Rat Brain in Stereotaxic Coordinates” (6th edition) spatially registered to the Waxholm Space atlas of the rat brain

description: The dataset contains location metadata defining the spatial registration of the 6th edition of “The Rat Brain in Stereotaxic Coordinates” (Paxinos & Watson, 2007) to the MRI/DTI image volume of the Waxholm Space atlas of the rat brain (Version 1.01; RRID:SCR017124). The stereotaxic atlas of Paxinos & Watson contains revised delineations of 161 coronal, 27 horizontal and 19 sagittal diagrams from young adult Wistar rats. The schematic diagram images were spatially registered to the Waxholm Space atlas of the rat brain. The dataset consists of an .xml file with spatial metadata that can be opened in the QuickNII tool (RRID:SCR016854) to view overlay images of the two atlases. The atlas images are not shared due to copyright restrictions, but the user can use own images together with the .xml file provided here, following the procedure provided in the accompanying data descriptor file. The dataset can be used for direct comparison of anatomical landmarks and spatial correspondences of brain region delineated in the two atlases.
DOI: 10.25493/yrkh-626
title: Paxinos & Watson’s “The Rat Brain in Stereotaxic Coordinates” (1st edition) spatially registered to the Waxholm Space atlas of the rat brain

description: The dataset contains location metadata defining the spatial registration of the 1st edition of “The Rat Brain in Stereotaxic Coordinates” (Paxinos & Watson, 1982) to the the MRI/DTI image volume of the Waxholm Space atlas of the rat brain (Version 1.01; RRID:SCR017124). The stereotaxic atlas of Paxinos & Watson contains 43 coronal, 13 horizontal and 9 sagittal diagrams from young adult Wistar rats. The schematic diagram images were scanned from the book version and spatially registered to the Waxholm Space atlas of the rat brain. The dataset consists of an .xml file with spatial metadata that can be opened in the QuickNII tool (RRID:SCR016854) to view overlay images of the two atlases. The original atlas images from the Paxinos and Watson are not shared due to copyright restrictions, but the user can use own images together with the .xml file provided here, following the procedure provided in the accompanying data descriptor file. The dataset can be used for direct comparison of anatomical landmarks and spatial correspondences of brain region delineated in the two atlases.
DOI: 10.25493/zb03-h5g
title: Swanson's “Brain Maps: Structure of the Rat Brain” (1st edition) spatially registered to the Waxholm Space atlas of the rat brain

description: The dataset contains location metadata defining the spatial registration of the 1st edition of “Brain Maps: Structure of the Rat Brain” (Swanson, 1992) to the MRI/DTI image volume of the Waxholm Space atlas of the rat brain (Version 1.01; RRID:SCR017124). The stereotaxic atlas by Swanson contains 73 coronal diagrams from an adult Sprague-Dawley rat. The schematic diagram images were spatially registered to the Waxholm Space atlas of the rat brain. The dataset consists of .png images of the atlas plates and an accompanying .xml file with spatial metadata that can be opened in the QuickNII tool (RRID:SCR016854) to view overlay images of the two atlases. The procedure for this is described in the data descriptor file. The dataset can be used to inspect how regions delineated in the two atlases spatially relate to each other.
DOI: 10.25493/zgcm-zxp
title: Comparability of basal ganglia delineations across different rat brain atlases (v2.0)

description: The dataset contains an evaluation of the comparability of basal ganglia delineations in eight commonly used rat brain atlases to similarly named, or in other ways corresponding, regions in the Waxholm Space atlas of the rat brain. The degree of spatial correspondence between delineations was semi-quantitatively scored by inspection of serial atlas images from different atlases co-registered to the Waxholm Space atlas of the rat brain. The dataset consists of an .xlxs file summarising spatial relationships and a .pdf file with accompanying descriptions. This provides an overview of the degree of overlap among basal ganglia delineations, which can be used to determine whether data defined by use of different atlases are fully or partly comparable.