cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/tggfs3tpbr
title: Evaluation of negative energy Coulomb (Whittaker) functions

description: Abstract This paper describes a code for evaluating exponentially decaying negative energy Coulomb functions and their first derivatives with respect to the radial variable. The functions, which correspond to Whittaker functions of the second kind, are obtained to high accuracy for a wide range of parameters using recurrence techniques. Title of program: whittaker_w Catalogue Id: ADSZ_v1_0 Nature of problem The closed-channel components of the asymptotic radial wave function corresponding to electron or positron scattering by atomic or molecular ions may be expressed in terms of negative energy Coulomb functions. The scattering observables are obtained from S or T matrices which in turn are obtained by matching the radial and asymptotic wavefunctions at a finite radial point. Recent large scale scattering calculations have required accurate values of the Coulomb functions at smaller ρ values and la ... Versions of this program held in the CPC repository in Mendeley Data ADSZ_v1_0; whittaker_w; 10.1016/j.comphy.2003.12.004 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/wc2jh3km56
title: A Neoproterozoic low-δ18O magmatic ring around South China: New evidence from the western margin of the Yangtze Block

description: Samples of volcanic rocks from the Suxiong Formation, and granitic rocks from the Shimian and Guaziping granites for in-situ zircon U-Pb dating, in-situ Hf and O isotopic, whole-rocks analyses studies.
DOI: 10.17632/xzh9bpd48z
title: Gallic Acid Derivative Stimulate Osteogenic Differentiation by Regulating Autophagy via JNK/mTOR Signaling Pathways in vitro

description: This paper was to demonstrate the effects and mechanism of methylated-based gallates 4-O-methylgallic acid on osteoblast differentiation. Cells were treated with different concentrations of 4-O-methylgallic acid.Then researchers evaluated the overall effects of 4-O-methylgallic acid on osteoblast by cell proliferation bioassay, ALP activity assay, Alizarin red S staining and detection the expression level of osteogenic-related gene including runt-related transcription factor 2 (RUNX2), bone sialoprotein (BSP), osteocalcin (OCN), alpha-1 type I collagen (COL1A1).Subsequently, cells were treated with ZXHA-TC with or without the JNK inhibitor SP600125 and the autophagy inhibitor 3-methyladenine (3-MA).Then western blotting and cell transfection were used by two researchers explore the potential relationship and signaling pathway between autophagy and the differentiation of osteoblast mediated by 4-O-methylgallic acid.The results of the present study demonstrated that 4-O-methylgallic acid stimulated cell viability, increased ALP activity, upregulated the expression of osteogenic genes, evoked the expression of autophagy markers. A range of 6.25x10-3μg/ml to 6.25x10-1μg/ml were recommended, within which 6.25x10-2μg/ml showed the best performance. SP600125 and 3-methyladenine suppressed the stimulating effects of 4-O-methylgallic acid on osteogenic differentiation By blocking JNK/mTOR signaling pathway.This study indicated that 4-O-methyl gallic acid stimulated osteoblast differentiation by regulating autophagy via JNK/mTOR signaling pathways.
DOI: 10.17632/zdmz3bbzsv
title: Income, Return, Growth Opportunity and Psychological Factors - Mutual Funds

description: Description of the Data and Visualizations
This dataset and the corresponding visualizations explore the relationships between several financial and psychological variables, including Steady Income (SI), Growth Opportunity (GO), Return (R), and Discipline (D). These relationships are defined through a set of equations and coefficients, providing insights into how these factors influence each other.

Variables:

Steady Income (SI): A numerical value representing the stable income of an individual or entity.
Growth Opportunity (GO): A numerical value representing the potential for income growth.
Return (R): The outcome or profit derived from investments, calculated based on SI, GO, and other factors.
Discipline (D): Represents the investment discipline, influenced by SI, GO, and psychological factors.
Psychological Factors (PF): A composite measure based on Return (RT), Consistency (C), and Emotional Stability (ES).
Coefficients:

alpha, beta, gamma, delta, eta, zeta, theta_1, theta_2, theta_3: These coefficients determine the weight and influence of each variable in the equations.
DOI: 10.17632/zrxpt67pcg
title: Dhofar1428 analysis

description: Table 1 include major elements of minerals in granulitic clasts, basalts and mineral fragments by analyzed by EPMA. Table 2 is trace elements of minerals in representative lithic clasts by analyzed LA-ICP-MS. Table 3 SIMS U-Pb dating results for the apatite grains from B1.
DOI: 10.17632/zsd79s262s
title: PCNA-mediated degradation of p21 coordinates the DNA damage response and cell cycle regulation in individual cells. Sheng et al

description: To enable reliable cell fate decisions, mammalian cells need to adjust their responses to dynamically changing internal states by rewiring the corresponding signaling networks. Here, we combine time-lapse microscopy of endogenous fluorescent reporters with computational analysis to understand at the single cell level how the p53-mediated DNA damage response is adjusted during cell cycle progression. Shape-based clustering revealed that the dynamics of the CDK inhibitor p21 diverges from the dynamics of its transcription factor p53 during S-phase. Using mathematical modeling, we predict and experimentally validate that S-phase specific degradation of p21 by PCNA-CRL4cdt2 is sufficient to explain these heterogeneous responses. This highlights how signaling pathways and cell regulatory networks intertwine to adjust the cellular response to the individual needs of a given cell.
DOI: 10.5066/p1s5nvf5
title: Data and regression models used to estimate chloride concentration and road salt loading for an urban rain garden, Gary, Indiana

description: This data release contains data used to develop linear regression models to calculate continuous chloride concentrations in groundwater and runoff at an urban rain garden in Gary, IN. A python script was developed to perform the regression analysis and estimate sodium chloride (NaCl) loading to 5 rain-garden flumes as the product of: (1) the estimated continuous (one-minute) chloride concentration, (2) the mass ratio of sodium chloride to chloride, and (3) continuous flume discharge. The python source code used to execute the regression model and loading calculations is included in this data release in the zipped folder named Model_Archive.zip. The regression input (discrete specific conductance and chloride concentration data), chloride concentration model input (continuous specific conductance data) and NaCl loading model input (continuous flume discharge and specific conductance data) that were used to estimate chloride concentrations at 3 USGS monitoring wells (413610087201001, 413612087201301, 413611087201004) and NaCl loading at 5 USGS rain garden flume monitoring stations (413611087201101, 413611087201001, 413612087200901, 413611087200901, 413611087201002) are also included as part of the model archive (Model_Archive.zip). The model output consists of 3 .csv files for the USGS monitoring wells with estimated continuous (hourly) chloride concentrations (mg/L) and 5 .csv files for the USGS flume monitoring sites with estimated continuous (1-minute) chloride concentrations (mg/L) and NaCl loading (g) that are presented in the zipped folder Model_Output_Data.zip.
DOI: 10.17632/36skk4xszc
title: Data for: A human ecological analysis of water conflict in rural areas: Evidence from Iran

description: Data can be used in the SPSS software.
DOI: 10.17632/3prb67dc84
title: Supplementary Data for: Optimizing Convolutional Neural Networks to Perform Semantic Segmentation on Large Materials Imaging Datasets: X-ray Tomography and Serial Sectioning

description: Supplementary Data
DOI: 10.17632/4fh6txnmct
title: LINF_360034600

description: Armadillo repeat-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/6f5x5v7dp9
title: Supplementary

description: Table S1, Figure S1, and Figure S2
DOI: 10.17632/79hwrd2zsw
title: LINF_290014400

description: ADP-ribosylation factor-like protein 3A | ARL-3A
Leishmania infantum (strain JPCM5)
DOI: 10.17632/b7f3c9s5n6
title: Introgression of a synthetic sex ratio distortion transgene into different genetic backgrounds of Anopheles coluzzii

description: In order to demonstrate the phenotypic stability of a sex ratio distorter in distinct genetic backgrounds of Anopheles mosquitoes, we introgressed a sex-ratio transgene from the donor line Ag(PMB)1 by six serial backcrosses into two recipient colonies of An. coluzzii that had been isolated in Mali (ML) and Burkina Faso (BF). Life history parameters  (number of eggs, hatching rate, larval mortality, pupal mortality and sex ratio), adult survival in small cages, 2La inversion karyotyping data (PCR Assay) and species-specific SNP genotyping dataset (KASP Assay) recorded in the donor parental strain Ag(PMB)1, two wild-type An.coluzzii recipient colonies, ML and BF at generation 1, 2, and 7, transgenic F1 and BC1 generations produced during introgression processes, and two backcrossed transgenic BC6 progenies were provided in five distinct excel files as raw data.
DOI: 10.17632/bznz85yc72
title: Data for: Maternal exposure to PM2.5 may increase the risk of congenital hypothyroidism in the offspring: a national data-based study in China
DOI: 10.17632/cccmbrvth7
title: Data for: Foundations of Programmable Process Structures for the unified modeling and simulation of agricultural and aquacultural systems

description: This supplementary material contains the input and output files of an illustrative simplified example about the biofilter of a Recirculation Aquaculture System, described in the Paper, entitled „Foundations of Programmable Process Structures for the unified modeling and simulation of agricultural and aquacultural systems”.

In the files, we apply Prolog syntax, as defined in Syntax_Prolog_implementation.txt.

The process network of the simplified example is defined in file Simplemod_N.pl. There are three coordinates ([inlet],[unit] and [outlet], containing 1-2-1 state elements and 1-3-0 transition elements, respectively. The initial conditions (concentrations, volumes) and parameters (kinetic coefficients, flow rates, limit concentrations, limit volumes) are described in a textual file (Simplemod_D.pl), derived through an MS Excel user interface.
The general-purpose executable kernel of PPS generates the editable graphical model (Simplemod_G.graphml) from the
•	GraphML definition of the meta-prototypes, 
•	the case specific process network (Simplemod _N.pl) and 
•	process database (Simplemod_D.pl).
files.

Having generated the graphical model, the expert of the given field has to prepare the locally executable programs for the respective prototype elements, copied from the meta-prototypes. In the studied RAS related example, there are two state and three transition prototypes, as follows: 
State prototypes:
•	prot_vessel: calculates the intensive properties (concentrations) from the extensive quantities in the various vessels (for the calculation of state elements “in”, “rea” and “out”),
•	prot_action: determines the control interventions initiated by the control decisions (for the calculation of state element, named control);
Transition prototypes:
•	prot_flow: determines the controlled event-driven transports for the calculation of transition elements “flow” between the various compartments, 
•	prot_reaction: calculates (actually isothermal) reactions (for the transition element, named “reaction”),
•	prot_control: defines the measurement-based control decisions (by the transition element, named “control”).

The locally executable programs of the prototypes are described in the Simplemod_G_prot.graphml file.

The expert can edit the graphical model, necessarily. Afterwards, the second generating algorithm of the general purpose PPS kernel interprets the completed Simplemod_G.graphml file and prepares the dynamic databases of the simulation, namely:
•	Exp.pl that contains the state and transition prototypes, including the full declaration of their local programs described by the appropriate Prolog clauses; and
•	Use.pl that contains the description of the actual state, transition and connection elements, with their initial values and the parameters.

The selected simulation results are saved in a file (it is Out.csv in our example). Also, the final state of the model (i.e. of the dynamic database Use.pl) is saved in FinalUse.pl.
DOI: 10.17632/cfd9ntvnfh
title: Linear and nonlinear ideal MHD codes-V103

description: Title of program: N3DV103 Catalogue Id: ABUR_v1_0 Nature of problem The ideal MHD equations are advanced in time. Given an MHD configuration, the result is the evolution of that configuration. The geometry is arectangular cylinder with conducting walls and periodic on the ends. Versions of this program held in the CPC repository in Mendeley Data ABUR_v1_0; N3DV103; 10.1016/0010-4655(77)90037-6 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/dz6m45z8jn
title: Supplementary material

description: Supplementary material
DOI: 10.17632/fcxjf3tjmz
title: Data for: The development of microstructure of coal by microwave irradiation stimulation

description: NMR results of coal samples before and after microwave treatment.
DOI: 10.17632/fzhrsk3nz5
title: LINF_170021800

description: heme importer | FLVCRb
Leishmania infantum (strain JPCM5)
DOI: 10.17632/ng5cztsp78
title: Data of caspase activity SARS-CoV-2

description: Data of caspase activity in Vero cells during SARS-CoV-2 infection
DOI: 10.17632/p55d743rbn
title: LDHU3_01.0040

description: Endonuclease/Exonuclease/phosphatase family; Leishmania donovani
DOI: 10.17632/p6v5b9ct9v
title: Wild bee (Apiformes) communities in contrasting habitats within agricultural and wooded landscapes: implications for conservation management

description: We assessed the species richness, abundance, and diversity of wild bees (Apiformes), including species of various functional groups in two contrasting and differently managed landscape types. For this study, we selected 15 xerothermic or sandy grasslands or extensively managed fresh meadows located in agricultural landscapes as well as 15 old fields located in wooded landscapes.
DOI: 10.17632/p74mftvvpw
title: LINF_280019900

description: Zinc finger protein | ZC3H45; Leishmania infantum (strain JPCM5)
DOI: 10.17632/r58stn3krn
title: Planes de vida y educación popular

description: Los planes de vida son formas de movilización y organización de la comunidad para la autogestión de su propio desarrollo, a partir en principio de las necesidades de subsistencia y diversión. La gestación de un plan de vida a partir de estas dos necesidades confiere al trabajo educativo un carácter práctico, ligado a lo productivo (de tipo cooperativo) y recreativo. Estos dos aspectos poseen un fondo cultural y sus desarrollos sintetizan el trabajo del educador popular en las comunidades pobres.
DOI: 10.17632/tb5znv95my
title: Data for: Predicting photochemical transformation and degradation of colored dissolved organic matter using a new mechanistic model

description: Dissolved Organic Matter Photochemical Degradation model for predicting the transformation of dissolved organic carbon by the absorption of light in an estuarine ecosystem.
DOI: 10.17632/vnvgnjzg7j
title: Scalable CVD Synthesis of Three-Dimensional Graphene from Cast Catalyst

description: Data collected to characterize and identify a unique 3D Graphene structure.
DOI: 10.17632/x68ys6nz5d
title: SIRT TCP(EUD) computation in HCC

description: sheet "doses": tumor dose distributions obtained from 90Y TOF-PET post selective internal radio-nuclide therapy (SIRT) and total lesion metabolism (TLM) variation measured using 11C-acetate or 18F-FDG PET
sheet "TCP":  computation of the equivalent uniform dose TCP(EUD)   (blue: rep > , alpha, step input), fit of the Laush et al. EBRT TCP (red: alpha and K input) and of the TLM variation fit (black: gam input)
DOI: 10.17632/yd4k5w9bg9
title: LINF_080015500

description: cysteine peptidase B (CPB); Leishmania infantum (strain JPCM5)
DOI: 10.17632/26wxyp8msd
title: LINF_170020800

description: Cytochrome b5 heme-binding domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/2k94zd47jz
title: Mitochondria_Aedes_galloisi

description: Aedes galloisi is known as a species of the galloisi complex, and this is mitochondrial data for Aedes galloisi in Korea.
DOI: 10.17632/4pr6pd3g8k
title: Aberrant active cis-regulatory elements associated with downregulation of RET finger protein overcome chemoresistance in glioblastoma. Ranjit, Hirano et al.

description: These are the raw data used in our study.
DOI: 10.17632/69ckvtv5xh
title: LncRNA THUMPD3-AS1 promotes invasion and EMT in gastric cancer by regulating the miR-1297/BCAT1 pathway

description: Long noncoding RNAs (lncRNAs) play crucial roles in the development of gastric cancer （GC）; However, studies of their mechanisms of action are needed to determine their clinical value. The aim of this study is to explore the effects and mechanisms of THUMPD3-AS1 in GC. Elevated levels of THUMPD3-AS1 were observed in GC and demonstrated a significant positive correlation with poor prognosis. Functionally, THUMPD3-AS1 promoted GC cell proliferation, migration, invasion, and epithelial–mesenchymal transition (EMT) and induced tumour growth in vivo. THUMPD3-AS1 exerts its regulatory function on BCAT1 through competitive binding with miR-1297. Further investigations confirmed that both THUMPD3-AS1 and miR-1297 interact with BCAT1. These findings suggest that THUMPD3-AS1 promotes GC invasion and EMT by regulating the miR-1297/BCAT1 pathway, indicating that THUMPD3-AS1 may serve as a novel biomarker and therapeutic target for GC.
DOI: 10.17632/6wm5hssy3g
title: Y.T., SUCLA2-coupled regulation of GLS succinylation and activity counteracts oxidative stress of tumor cells

description: Glutaminase regulates glutaminolysis for cancer cell proliferation. However, the mechanism underlying glutaminase activity regulation is largely unknown. Here we demonstrated that the kidney-type glutaminase (GLS) is highly expressed in human pancreatic ductal adenocarcinoma (PDAC) specimens with correspondingly upregulated glutamine dependence for PDAC cell proliferation. In addition to regulation at its expression level, GLS K311 is succinylated by succinyl-CoA in a succinyl-CoA concentration-dependent manner, leading to enhanced GLS oligomerization and activity. Upon oxidative stress, succinyl-CoA synthetase ADP-forming  subunit (SUCLA2) phosphorylated by p38 MAP kinase at S79 dissociates from GLS, resulting in enhanced GLS K311 succinylation. Activated GLS increases glutaminolysis and production of NADPH and glutathione, thereby counteracting oxidative stress-increased reactive oxygen species and apoptosis and promoting tumor cell proliferation and tumor growth in mice. In addition, the levels of SUCLA2 pS79 and GLS K311 succinylation, which were mutaully correlated, were markedly higher in the PDAC specimens than those in the adjacent normal tissue samples and positively correlated with the advanced stages of PDAC and inversely correlated with overall survival durations of the patients. Our findings uncover a critical regulation of GLS activity by SUCLA2-coupled GLS succinylation regulation and underscore the regulatory role of metabolites in glutaminolysis and PDAC development.
DOI: 10.17632/7gs8kr3szp
title: Data for: East–west contrast of Northeast Asian summer precipitation during the Holocene

description: Holocene evolution of the East Asian summer monsoon, including the EASM precipitation and circulation, simulated by the Kiel climate model (KCM).
DOI: 10.17632/8r28587sfx
title: Video-Based Recipe Retrieval

description: The original data for the paper of "Video-Based Recipe Retrieval".
DOI: 10.17632/8wp4rx7xtb
title: Supplementary file 5, Significantly differentially expressed genes and transcripts

description: This study focuses on understanding how plants, specifically Arabidopsis thaliana, respond to two major pollutants, lead (Pb) and vanadium (V) found in oil contaminated land. While the effects of these pollutants on animals are well-studied, their impact on plants is not as clear. To fill this gap, we exposed Arabidopsis seedlings to Pb and V and analyzed the changes in gene expression using advanced sequencing and validated the data using RT PCR technique.
The results showed that exposure to Pb and V led to significant changes in gene expression in Arabidopsis seedlings compared to untreated samples. Through Gene Ontology and pathway analysis, we identified several biological processes and pathways associated with the differentially expressed genes. Overall, this investigation sheds light on the molecular mechanisms underlying the toxicity and tolerance of Arabidopsis to Pb and V, providing valuable insights into how plants respond to heavy metal stress.
DOI: 10.17632/cj4n8m9kk4
title: Atlas of Viral Adaptive Evolution Code 

description: Code to calculate rate of adaptation for a virus that has been sequenced over time. The rate_of_adaptation.ipynb notebook will calculate the rate using an outgroup that gets updated over time, while the rate_of_adaptation_bhatt.ipynb notebook will calculate a rate using a fixed outgroup
DOI: 10.17632/d2by7636jk
title: LINF_310029300

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/dnknchv278
title: Ewens & Hutchison data

description: This is the data (in an SPSS file) for a study reported by Ewens & Hutchison. It was predicted that having multiple group memberships would moderate the impact off ostracism on psychological needs and mood. In particular, it was expected that the widely-reported negative impact of ostracism on psychological need satisfaction and mood would be attenuated at high (relative to low) levels of multiple group memberships. Regression analyses confirmed that multiple group memberships did not moderate the impact of ostracism on belonging, control, meaningful existence or mood but did moderate its effect on self-esteem, although not in the predicted way: ostracism reduced self-esteem at moderate and high but not low levels of multiple group memberships. The results are interpreted with reference to theory and research on the potential of group memberships to act as both a 'social cure' and a 'social curse' (e.g. Jetten et al., 2017).
DOI: 10.17632/jkd2d9v5zt
title: Smith Achilleos Gordon: Distribution patterns of shelf bryozoans around southern Aotearoa New Zealand

description: The area of southern Aotearoa New Zealand, from Fiordland, Foveaux Strait and Otago southwards to Snares Platform is a well-known bryozoan hotspot, with fewer species known from the shelves around Auckland and Campbell Islands further south. Over 350 bryozoan species have been reported from this region, principally from monographs in the 1980s, augmented by a shelf dredging programme conducted by the University of Otago. We have, to date, 158 University of Otago and 71 NIWA stations in the region from 44°S to 53°S latitude, 165°E to 172°E longitude, in water depths ranging from 6 to 1003 m. A list of 359 bryozoan species was collated from 229 stations, based on published and unpublished distribution data. The 43 commonest species (15 occurrences) were mapped using ArcGIS® Pro and grouped into four common distribution patterns. Accurate distribution information allows for active conservation of these small but important sessile invertebrates, via habitat protection and management of bottom disturbance.  
Here we provide excel spreadsheets with station localities (Table 1), and the species: station matrix (Table 2) as well as the distribution maps for all 43 common and widespread species.