cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28760843.v1
title: The data in the flume experiments

description: The data of the average riverbed elevations and final channel-bed elevations measured in the flume experiments and the grain size distributions of the artificial sediment (fly ash) used in the flume experiments.
DOI: 10.6084/m9.figshare.7170440.v1
title: Faces

description: zipped files of a set of photos
DOI: 10.6084/m9.figshare.23626416.v3
title: <strong>Temporal dynamics and microbial mechanisms of soil organic carbon priming in aggregate-size classes from different tillage histories</strong>

description: Original data of soil carbon priming in different tillage history
DOI: 10.6084/m9.figshare.24777321.v1
title: MD simulation files

description: free MD simulation files of atomic coordinates in gromacs format (*.gro) taken from each of systems 1-8 in Supplementary Table 3 at t = 0 (initial) and t = 1 microseconds (final).
DOI: 10.6084/m9.figshare.24787392.v1
title: data.csv

description: Data used for analysis.
DOI: 10.6084/m9.figshare.7937585.v1
title: Supplementary Material for: Abdominal Displacement Ventilation: An Effective Intervention for Sedation-Induced Hypoxia

description: <b><i>Background:</i></b> Sedation for bronchoscopy at times causes hypoxia. The application of positive pressure ventilation for sedation-induced hypoxia often requires cessation of the bronchoscopy. In contrast, ventilation effected via cyclical abdominal compression, if effective, would allow bronchoscopy to proceed. Initial trials of abdominal displacement ventilation (ADV) proved successful. This report documents extended experience with ADV. <b><i>Objective:</i></b> To evaluate and report the efficacy and applicability of ADV in the setting of sedation-induced hypoxia for consecutive patients over an extended interval. <b><i>Methods:</i></b> Based upon its initial efficacy, ADV had been incorporated into the standard approach to sedation-induced hypoxia. We retrospectively reviewed all bronchoscopies performed by interventional pulmonary over a 12-month interval. Management and efficacy of every episode of sedation-induced hypoxia were documented. <b><i>Results:</i></b> Over the study interval, 893 bronchoscopies had been performed, with sedation-induced hypoxia occurring in 38 (4%). ADV was possible in 37 of the 38 patients. In every case, ADV was effective and allowed completion of the procedure. There were no adverse effects. <b><i>Conclusion:</i></b> ADV is a simple, effective, noninvasive approach to sedation-induced hypoxia that effects adequate ventilation and allows safe continuance of procedures.
DOI: 10.6084/m9.figshare.12162507.v1
title: GTT-1-protein-037.dcd

description: Trajectories dataTrajectories of WW domain
DOI: 10.6084/m9.figshare.5128030.v1
title: Supplementary Material for: Sequence of Molecular Events during the Maturation of the Developing Mouse Prefrontal Cortex

description: Recent progress in psychiatric research has accumulated many mouse models relevant to developmental neuropsychiatric disorders using numerous genetic and environmental manipulations. Since the prefrontal cortex (PFC) is essential for cognitive functions whose impairments are central symptoms associated with the disorders in humans, it has become crucial to clarify altered developmental processes of PFC circuits in these mice. To that end, we aimed to understand a sequence of molecular events during normal mouse PFC development. Expression profiles for representative genes covering diverse biological processes showed that while there were little changes in genes for neuroreceptors and synaptic molecules during the postnatal period, there were dramatic increases in the expression of myelin-related genes and the parvalbumin gene, peaking at postnatal day (P)21 and P35, respectively. The timing of the peaks is different from that observed in the striatum. Furthermore, the evaluation of the circuitry maturation by measuring extracellular glutamate in the PFC revealed that sensitivity to an NMDA antagonist did not become an adult-like pattern till P56, suggesting that some of the maturation processes continue till P56. The trajectory of molecular events in PFC maturation described here should help us to characterize how the processes are affected in disease model mice, an important first step for translational research.
DOI: 10.6084/m9.figshare.4964834.v1
title: Social Media Planned Parenthood Data.xlsx

description: A dataset gathered to evidence twitter behaviour around the defunding of planned parenthood
DOI: 10.6084/m9.figshare.20730820.v1
title: Kampana Tower

description: Google maps review for Kampana Tower, historical city Kotor, Montenegro
DOI: 10.6084/m9.figshare.22549765.v1
title: Supplementary Material for: Extensive, 3,8 Mb sized deletion of 22q12 in a patient with bilateral schwannoma, intellectual disability, sensorineural hearing loss and epilepsy

description: Introduction: In contrast with the well-known and described deletion of the 22q11 chromosome region responsible for DiGeorge syndrome, 22q12 deletions are much rarer. Only a few dozen cases have been reported so far. This region contains genes responsible for cell cycle control, chromatin modification, transmembrane signaling, cell adhesion and neural development, as well as several cancer predisposition genes. Case presentation: We present a patient with cleft palate, sensorineural hearing loss, vestibular dysfunction, epilepsy, mild to moderate intellectual disability , divergent strabism, pes equinovarus, platyspondylia, and bilateral Schwannoma. Using Microarray-based Comparative Genomic Hybridization (aCGH), we identified the de novo 3,8 Mb interstitial deletion at 22q12.1→22q12.3. We confirmed deletion of the critical NF2 region by MLPA analysis. Discussion/Conclusion: Large 22q12 deletion in the proband encases the critical NF2 region, responsible for development of bilateral Schwannoma. We compared the phenotype of the patient with previously reported cases. Interestingly, our patient developed cleft palate even without deletion of the MN1 gene, deemed responsible in previous studies. We also strongly suspect the DEPDC5 gene deletion to be responsible for seizures, consistent with previously reported cases.
DOI: 10.4121/14034821.v2
title: Experience of urban parks: attributes that influence preferences and the relationship between personal and park characteristics, park use behaviour, and sense of place and well-being

description: Urban green areas, such as parks, are becoming increasingly important in densifying cities. Urban parks encourage physical and social activity, recreation and relaxation, and thus eventually promote people’s well-being. The aim of the current study is twofold, to examine which urban park attributes influence the preferences of park users and to gain more insight in the relationships between personal and park characteristics, park use behaviour, sense of place and long-term subjective well-being. For the first question, an online stated-choice experiment was developed. Seven park attributes (number and composition of trees; presence of benches, side paths, a playground, litter, and flowers) were manipulated in a virtual park. In an online stated-choice task, videos of these park alternatives were presented and the preferences were measured.<br>It is found that especially the number of trees and the presence of flowerbeds, particularly with a diversity of flowers, influenced participants’ preferences. The presence of many benches and a playground were valued as well, but to a lesser extent. The presence of litter was found to be less troublesome than expected. Alternatives with all trees placed in one cluster were disliked. Moreover, significant standard deviations were found for the presence of side paths, a playground, and the absence of litter, which indicates that preference heterogeneity for these attributes exist. In a latent class analysis, two groups were identified, namely a Nature-loving group, who mainly valued the trees and the flowers, and an Amenity-appreciating group, who valued almost all attributes. It can be concluded that natural elements and a variety of flower species are important in an urban park, while facilities are evaluated differently by different groups of people.<br>An online questionnaire was developed to collect data concerning personal characteristics, characteristics of parks that were visited and the way the park was used. Furthermore, questions were included to measure the sense of place and long term subjective well being. The questionnaire was distributed in two medium sized cities in the Netherlands, namely Eindhoven and ‘s-Hertogenbosch. Data was analysed using a path analysis. The results of this research show that appreciation of facilities, vegetation and the absence of disturbances influence the use and sense of place of a park. Furthermore, the results also show that personal characteristics influence the use of a park and the long-term subjective well-being.<br>These findings may support park designers and policymakers in decision-making. This information can be used to improve existing parks or design new parks that contribute to more positive experiences and improve thereby the subjective well-being of individuals. Moreover, the research illustrates the usefulness of creating a virtual park in environmental preference research. <br>
DOI: 10.6084/m9.figshare.13234343.v1
title: A dataset on land cover from 1990 to 2015 in Mongolia

description: Mongolian Plateau locates in the interior of Eurasia, far from the sea, is extremely vulnerable to climate change and the deleterious effects of human activity. As one of the indicators in the United Nations Sustainable Development Goals (SDGs), land degradation combating is a big challenge in Mongolia, located in the corp part of MP. By means of the object-oriented remote sensing interpretation, we obtained the refined land cover data of Mongolia in 1990, 2000, 2010, and 2015 with 30-m resolution. The land cover classification of Mongolian contains 11 categories, including forest, meadow steppe, real steppe, desert steppe, barren, sand, desert, ice, water, cropland, and built area. Their corrsponding codes in the attribute table of the dataset are 11, 21, 22, 23, 72, 71, 73, 31, 51, 41, and 61, respectively. Their overall classification accuracies were 82.26%, 82.77%, 92.34%, and 92.75%, respectively. It can be found that the land cover of Mongolia has obvious law of zonal gradual changes. From north to south are forest, real steppe, desert steppe, and barren land, and the vegetation coverage progressively decreases. This dataset can provide scientific data support for sustainable development in Northeast Asia and achieving the goal of Land Degradation Neutrality. <br>
DOI: 10.6084/m9.figshare.25608315.v1
title: Phenotype

description: Phenotype
DOI: 10.6084/m9.figshare.12449048.v1
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-15004 to JVASP-15875)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.24749355.v1
title: small-angle and wide-angle X-ray scattering raw data

description: Raw data for polymers measured using small-angle and wide-angle X-ray scattering.
DOI: 10.6084/m9.figshare.26947822.v1
title: A systematic assessment of robustness in CNS safety pharmacology

description: The multicenter study ‘A systematic assessment of robustness in CNS safety pharmacology’ aimed to assess the robustness of Irwin tests across multinational sites during three stages of protocol harmonization. Neurofunctional testing in animals is essential to characterize drug-induced effects on the CNS prior to first-in-human trials (ICH S7A). With this multicenter approach, we aimed to determine the impact of environmental, experimental, and scoring-related variables on Irwin outcome measures, assessing between-site variability during three consecutive stages of protocol harmonization. The projects were part of the EQIPD consortium (Enhanced Quality in Preclinical Data, https://quality-preclinical-data.eu/; https://go-eqipd.org/). EQIPD is a consortium of scientists from academia and industry that aims to improve the robustness of preclinical data generated in animal studies. In particular, the EQIPD consortium aims to identify factors that influence the quality of data generated in preclinical research in order to provide recommendations for a successful transition from preclinical research to the clinic.<br><b>Raw datasets</b>Stage 11_Dataset_EQIPD-Irwin_Stage1_Domains.xlsx2_Dataset_EQIPD-Irwin_Stage1_Site1.xlsx3_Dataset_EQIPD-Irwin_Stage1_Site2.xlsx4_Dataset_EQIPD-Irwin_Stage1_Site3.xlsx5_Dataset_EQIPD-Irwin_Stage1_Site4.xlsx6_Dataset_EQIPD-Irwin_Stage1_Site5.xlsx7_Dataset_EQIPD-Irwin_Stage1_Domain-other-measures.xlsxDatasets 1, 2, 3, 4, 5, and 6 underlie Figure 2. Dataset 7 underlies Supplementary Figures 1, 2, 3, 4, and 5.<br>Stage 28_Dataset_EQIPD-Irwin_Stage2_Domains.xlsx9_Dataset_EQIPD-Irwin_Stage2_Site1.xlsx10_Dataset_EQIPD-Irwin_Stage2_Site2.xlsx11_Dataset_EQIPD-Irwin_Stage2_Site3.xlsx12_Dataset_EQIPD-Irwin_Stage2_Site4.xlsx13_Dataset_EQIPD-Irwin_Stage2_Site5.xlsx14_Dataset_EQIPD-Irwin_Stage2_Domain-other-measures.xlsxDatasets 8, 9, 10, 11, 12, and 13 underlie Figure 3. Dataset 14 underlies Supplementary Figures 6, 7, 8, 9, and 10.<br>Stage 315_Dataset_EQIPD-Irwin_Stage3_Domains.xlsx16_Dataset_EQIPD-Irwin_Stage3_Masterfile-Binary.xlsx17_Dataset_EQIPD-Irwin_Stage3_Sites1-2-3.xlsx18_Dataset_EQIPD-Irwin_Stage3_Domain-other-measures.xlsx19_Dataset_EQIPD-Irwin_Stage3_Site4.xlsx20_Dataset_EQIPD-Irwin_Stage3_Site4_Domain-other-measures.xlsxDatasets 15, 16, and 17 underlie Figures 4 and 5. Dataset 18 underlies Supplementary Figure 11. Dataset 19 underlies Supplementary Figure 12. Dataset 20 underlies Supplementary Figure 13.
DOI: 10.4121/uuid:323587ea-82b7-4cff-b123-c660424345e5
title: Commercial microwave link data for rainfall monitoring

description: Dataset of commercial microwave link (CML) data, which can be used to estimate path-average rainfall between telephone towers. Contains microwave frequency, end date & time of reading, minimum & maximum received power, path length, coordinates, and link identifier. For a network of on average ~2500 links covering the Netherlands having a temporal resolution of 15 min. The dataset, which consists of two files, can be used with the open-source R package RAINLINK (https://github.com/overeem11/RAINLINK) to estimate path-averaged rainfall and to make rainfall maps. Data have been used in the mentioned papers under "link to publication", but these use either a subset of the dataset or also other data. A manuscript which will describe the exact characteristics of this dataset is in preparation.
DOI: 10.6084/m9.figshare.9928547.v1
title: ANA Revised.rar

description: 92 coarse speckled, 18 fine speckled, 27 nucleolar and 29 peripheral
DOI: 10.6084/m9.figshare.6480494.v1
title: FT-IR.rar

description: FT-IR analysis
DOI: 10.6084/m9.figshare.4249646.v1
title: Single dose caffeine protects the neonatal mouse brain against hypoxia ischemia - Flow cytometric data

description: Caffeine 5mg/kg or phosphate buffered saline given directly after sham operation or brain hypoxia ischemia. Flow cytometric evaluation of brain immune cell content 24h, 72h and 2 weeks after brain injury. <br>
DOI: 10.6084/m9.figshare.22575130.v1
title: Experiment data for "Observation of critical phase transtition in a generalized AAH model with superconducting qubits"

description: We simulated the one-dimensional generalized Aubry-Andre-Harper model for extended, localized and critical phases by using a programmable quantum processor with 10 superconducting qubits interacted through tunable couplers. We studied the properties of phase transitions and many-body dynamics in the presence of quasi-periodic modulations for both off-diagonal hopping coefficients and on-site potentials of the model controlled respectively by adjusting strength of couplings and qubit frequencies. We observed the spin transport for initial single- and multi-excitation states in different phases, and characterize phase transitions by experimentally measuring dynamics of participation entropies.
DOI: 10.6084/m9.figshare.11765649.v3
title: GREAT Export

description: Raw output from GREAT analysis (http://great.stanford.edu/public/html/) for the regions surrounding the 203 genome-wide significant lead SNPs.
DOI: 10.6084/m9.figshare.24243892.v1
title: NMR and MS data from doi:10.3389/fctls.2023.1275281.

description: NMR and MS data from doi: 10.3389/fctls.2023.1275281.
DOI: 10.6084/m9.figshare.26037391.v1
title: Raw and Assembly sequences and Sanger sequencing peaks for validating long-read epicPCR adaptability

description: We applied long-read epicPCR to target one efflux pump gene tmexD, one IS<i>6</i> family insertion sequence IS<i>1216E</i> and six clinically important ARGs in pure bacterial cultures. Final nested PCR products were subjected to Sanger sequencing and resulting raw sequences, assembled sequences were uploaded in figshare. The .ab1 files can be accessed using software BioEdit.
DOI: 10.6084/m9.figshare.27693993.v1
title: Historical Stock Price Data of Major Bangladeshi Banks on Dhaka Stock Exchange (2012-2014)

description: This dataset comprises stock price data of 12 prominent Bangladeshi banks listed on the Dhaka Stock Exchange (DSE), covering the period from 2012 to 2024. Each bank's dataset contains over 2,650 samples, offering detailed insights into daily stock performance over these years. The banks represented include AB Bank, Bank Asia, City Bank, Dhaka Bank, Eastern Bank Limited (EBL), Exim Bank, First Security Islami Bank, IFIC Bank, Islami Bank Bangladesh, Jamuna Bank, Midland Bank, and Mutual Trust Bank (MTB). The data has been gathered directly from the Dhaka Stock Exchange website, providing an accurate and valuable resource for financial analysts, researchers, and academicians interested in Bangladeshi banking sector trends, stock market analysis, and economic research related to emerging markets.
DOI: 10.6084/m9.figshare.14535519.v1
title: Supplementary Material for: Protective Effects of 1,25 Dihydroxyvitamin D<sub>3</sub> against High-Glucose-Induced Damage in Human Umbilical Vein Endothelial Cells Involve Activation of Nrf2 Antioxidant Signaling

description: <b><i>Aim:</i></b> To explore the protective effects and related mech­anisms of 1,25 dihydroxyvitamin D<sub>3</sub> (1,25(OH)<sub>2</sub>D<sub>3</sub>) on en­dothelial dysfunction under hyperglycemic conditions. <b><i>Methods:</i></b> Cultured human umbilical vein endothelial cells (HUVECs) were treated with normal glucose (glucose concentration of 5.5 mmol/L), high glucose (glucose concentration of 33 mmol/L), and high glucose plus 1,25(OH)<sub>2</sub>D<sub>3</sub>, respectively. Cell viability and apoptosis, intracellular reactive oxygen species (ROS) and nitric oxide (NO) contents, antioxidant enzyme activities, proinflammatory cytokine mRNA levels, and expression levels of proteins involved were measured. <b><i>Results:</i></b> High glucose decreased HUVEC viability, promoted ROS production and apoptosis, and reduced NO generation, which was associated with decreased activities of antioxidant enzymes and increased levels of proinflam­matory cytokines. 1,25(OH)<sub>2</sub>D<sub>3</sub> treatment enhanced HUVEC viability, attenuated ROS generation and apoptosis, and ­increased NO production, which was accompanied by ­enhanced antioxidant enzyme activities and reduced ­proinflammatory factors. Mechanically, 1,25(OH)<sub>2</sub>D<sub>3</sub> promoted nuclear translocation of nuclear factor erythroid 2-related factor 2 (Nrf2) in a vitamin D receptor (VDR)-dependent manner, and Nrf2 siRNA abolished the antioxidative and ­anti-inflammatory effects of 1,25(OH)<sub>2</sub>D<sub>3</sub>. <b><i>Conclusions:</i></b> 1,25(OH)<sub>2</sub>D<sub>3</sub> attenuates high-glucose-induced endothelial oxidative injury through upregulation of the Nrf2 antioxidant pathway in a VDR-dependent manner.
DOI: 10.6084/m9.figshare.22109546.v1
title: Supplementary Material for: Early onset outlet obstruction of a temporary diverting loop ileostomy secondary to urinary retention

description: A mechanical obstruction is not a physiological entity and when it occurs within the 30-day postoperative period, is called an early postoperative small bowel obstruction. Kinking of small bowel segments at the ileostomy outlet secondary to a distended bladder is an unusual source of early postoperative small bowel obstruction. A 36-year-old female underwent a redo J-Pouch surgery and creation of loop ileostomy after pouch failure related to recurrent small bowel obstruction and perianal fistulae. Her foley catheter was removed on postoperative day three and she passed a trial of void test. On postoperative day six, the abdomen became progressively more distended. CT imaging with IV contrast showed small bowel distension extending to the midline anterior to the urinary bladder where it demonstrated a narrowed lumen. These findings were thought to be the cause of small bowel obstruction at this level before the ileostomy. Immediately after CT, a foley catheter was applied with which two liters of urine was removed and consequently gas and stool were observed in the ostomy soon thereafter. Although rare, urinary retention may cause intestinal obstruction, especially in the presence of a loop ileostomy in close proximity.
DOI: 10.6084/m9.figshare.18961994.v1
title: T2D benchmarking output 2 -- Supp Fig 1 D-E data

description: These are the data used to generate the outputs described in the upset plots in Supp Fig 1D-E, which were generated as a response to reviewers. If you want to see how these are plotted, check out the Rmd here (https://github.com/chiragjp/ubiome_robustness). If you want to understand more about how they are generated, they are processed outputs from the quantvoe pipeline. The code to run this analysis is also in the above Git repo, in the revisions folder (analysis code: https://github.com/chiragjp/ubiome_robustness/blob/main/revisions/parse_revisions2_analysis.R processing code: https://github.com/chiragjp/ubiome_robustness/blob/main/revisions/parse_revisions2_analysis.R)
DOI: 10.6084/m9.figshare.13234556.v3
title: Cultured isolates

description: Genome sequences associated with 282 cultures isolates described as part of this study
DOI: 10.6084/m9.figshare.5123317.v1
title: Supplementary Material for: Reclassification of Giant Viruses Composing a Fourth Domain of Life in the New Order <b><i>Megavirales</i></b>

description: Interest in giant viruses has risen sharply since 2003, following the discovery of the Mimivirus and four other protist-infecting giant viruses that are linked to the nucleocytoplasmic large DNA viruses (NCLDVs). Despite considerable heterogeneity in hosts and genome sizes, the NCLDVs have been shown to be monophyletic based on analyses of their sequences and gene repertoires and recent studies have proposed that these viruses share a common ancient ancestor and compose a fourth domain of life. In addition, several characteristics of these giant viruses contradict or do not match the criteria used for the canonical definition of viruses, and the NCLDV denomination is not completely appropriate. We propose here to define a new viral order named <i>Megavirales</i>.
DOI: 10.6084/m9.figshare.21821901.v1
title: Data

description: Results obtained from RHESSys, hypothetical vs base scenario. Calibration and validation comparing observed and simulated streamflow with RHESSys. R code developed to run RHESSys.