cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1g1jwsv0g
title: Data for: Temperate and tropical lizards are vulnerable to climate warming due to increased water loss and heat stress

description: Climate warming has imposed profound impacts on species globally.
 Understanding the vulnerabilities of species from different latitudinal
 regions to warming climates is critical for biological conservation. Using
 five species of Takydromus lizards as a study system, we quantified
 physiological and life-history responses and geography range change across
 latitudes under climate warming. Using integrated biophysical models and
 hybrid species distribution models, we found: (1) thermal safety margin is
 larger at high latitudes, and is predicted to decrease under climate
 warming for lizards at all latitudes; (2) climate warming will speed up
 embryonic development and increase annual activity time of adult lizards,
 but will exacerbate water loss of adults across all latitudes; and (3)
 species across latitudes are predicted to experience habitat contraction
 under climate warming due to different limitations: tropical and
 subtropical species are vulnerable due to increased extremely high
 temperatures, whereas temperate species are vulnerable due to both
 extremely high temperatures and increased water loss. This study provides
 a comprehensive understanding of the vulnerability of species from
 different latitudinal regions to climate warming in ectotherms and also
 highlights the importance of integrating environmental factors, behavior,
 physiology, and life-history responses in predicting the risk of species
 to climate warming.
description: Missing data is represented by blank cells
DOI: 10.5061/dryad.sxksn036b
title: Soil N dynamics in mixed and larch forests in northeastern China

description: We developed a multiple-indicator approach to evaluate differences in soil
 N availability across sites and between larch monoculture and mixed stands
 paired at three sites (Daxinganling, Maoershan, and Qingyuan) in
 northeastern China. The selected indicators were foliar %N, soil C/N, soil
 inorganic N, foliar δ15N, and δ15N of bulk soil, ammonium, and nitrate in
 the soil profiles.
DOI: 10.5061/dryad.hhmgqnkk4
title: Data from: Links across ecological scales: Plant biomass responses to elevated CO2

description: Despite the wide agreement that increased plant biomass accumulation
 under elevated CO2 concentrations (e[CO2]) might play a
 key role in climate change, the effect of e[CO2] on plant biomass levels
 remains a major uncertainty in climate models. In the review associated
 with this dataset, we discuss the evidence for increased biomass levels
 under e[CO2] across multiple levels of ecological organization, scaling
 from physiological responses to changes in population-, community-,
 ecosystem-, and global-scale dynamics. We find that evidence for a
 sustained biomass response to e[CO2] varies across ecological scales,
 leading to diverging conclusions about the responses of individuals,
 populations, communities, and ecosystems. We identify key research gaps in
 our understanding of the effect of e[CO2] on plant biomass and highlight
 the need to integrate knowledge across scales of ecological organization
 so that large-scale modeling can represent the finer-scale mechanisms
 needed to constrain our understanding of future terrestrial C storage.
DOI: 10.5061/dryad.vx0k6djvk
title: Data to reproduce: Cultural diffusion dynamics depend on behavioral production rules

description: This repository contains data to reproduce the manuscript titled
 "Cultural diffusion dynamics depend on behavioural production
 rules". These RDAs contain simulation data, as well as inference data
 from NBDA and EWA analyses. They are intended to be used with the analysis
 code found at www.github.com/michaelchimento/acquisition_production_abm.
description: These datasets been produced by agent based simulations.
description: Please see the included readme for a short description of each
 dataset. Clone the github repository and place these
 Rda files into the model_outputs/Rda_files/ directory. Code to reproduce
 the figures and analyses in the analysis directory can be then
 run.
DOI: 10.5061/dryad.crjdfn36x
title: Data from: Improving governance outcomes for water quality: insights from participatory social network analysis for chalk stream catchments in England

description: Globally important chalk streams in England are in poor ecological health,
 in part due to inadequate water quality. Addressing this issue requires an
 understanding of the governance systems that surround water quality. The
 complexity and uncertainty inherent in hydrological systems has led to the
 emergence of integrated and adaptive forms of governance. In these
 multi-actor governance systems, the structure of the relationships between
 actors (the social network) has been shown to affect governance processes
 and outcomes. Using participatory social network analysis, we mapped and
 analysed the social networks for the River Test and River Itchen in
 Hampshire, UK, to identify actors and their roles, determine the network
 characteristics, and identify interventions to improve governance.
 Although the results suggest a well connected network of actors from the
 state, private sector and civil society, we find that decision making is
 not decentralised. Bureaucratic governance by central state actors
 dominates. However, trust in these central state actors and private actors
 in the networks is low, which undermines collaboration and co-ordination
 in the network. Devolving authority to local actors, building trust in the
 networks, and improving connections to important actors could help to
 improve governance outcomes for water quality.
DOI: 10.5061/dryad.5x69p8d66
title: Resolving the tectonic setting of South China in the late Paleozoic

description: The tectonic setting of South China during the late Paleozoic is essential
 to understanding the geodynamics off the eastern margin of Pangea
 supercontinent due to its unique paleo-position at the confluence of the
 Paleo-Tethys and Panthalassic oceans. Here, we present integrated
 biostratigraphic, geochronological, and isotope geochemical data on the
 late Carboniferous siliciclastic rocks from southeast South China in order
 to decipher the tectonic evolution of the South China
 Block.  We collected three siliciclastic samples from
 the section at stratigraphic heights of 0.6 m, 16 m, and 26
 m. The U-Pb age dating of detrital zircons was conducted by
 LA-ICP-MS at the Tianjin Center of Geological Survey. Glass NIST
 610 was used as external standards for trace element calibration. Zircon
 Hf isotopic data were conducted by LA-MC-ICP-MS at Nanjing FocuMS
 Technology Co. Ltd. We also compiled zircon U-Pb age data and Hf isotopic
 data  from previously published sources, including Hu et al.
 2015, Hu et al. 2012, Li et al. 2020, 2017 and Li et al. 2012.
DOI: 10.15468/dl.zf3m6t
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Memecylon acuminatum"
 ]
}

 The dataset includes 39 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003171-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.2ngf1vhrb
title: Flower color and flowering phenology mediate plant-pollinator interaction assembly in a diverse co-flowering community

description: Uncovering the role of competition and facilitation in community assembly
 is central for developing a predictive understanding of the forces that
 organize biodiversity. Standard trait-based approaches however rely on
 detection of only one assembly mechanism (competition or facilitation)
 along a single trait even though pollinator-mediated plant-plant
 interactions can be structured along multiple phenotypic, phenological and
 ecological traits. We evaluated plant species distribution along multiple
 phenotypic and ecological traits (flower color, flowering time, pollinator
 sharing) and described an entire co-flowering community as a set of
 modules with unique patterns of assembly, to test predictions regarding
 the relative contribution of competition and facilitation to the assembly
 of a diverse co-flowering community. We show a modular pattern of flower
 color assembly. Flower color modules differ in their spectral reflectance
 patterns including color hue and saturation. Within modules, however,
 species are differentially assembled along phenological and ecological
 traits (pollinator sharing) depending on the main pollinator group
 visiting plant species within each module. Results suggest different trait
 assembly patterns within individual trait-modules in the same co-flowering
 community and that different trait-patterns can result from the same type
 of ecological interaction. This study reveals empirical evidence of
 community assembly along multiple axes of trait differentiation and raises
 caution when interpreting assembly patterns based on a single trait.
description: Excel
DOI: 10.5061/dryad.f1vhhmh0k
title: Evidence that long-distance dispersal of aquatic invertebrates by ducks increases with propagule size

description: Migratory ducks are key dispersal agents for aquatic organisms, yet
 differences in their potential for short- and long-distance dispersal are
 still poorly understood, particularly differences among aquatic
 invertebrate taxa. Using seven species of aquatic invertebrates and a duck
 species known to feed on them in the wild (the northern shoveler) as a
 model system, we evaluated whether their potential for endozoochorous
 dispersal varies among 5 of the species and scales with propagule size for
 the 7 species. We also tested the expectation of a lower dispersal
 potential for invertebrate propagules, as compared to plant seeds; and
 evaluated whether intra-specific variation (in particular, sexual
 dimorphism) influences the potential of waterbirds as dispersal vectors.
 An experiment with 5 invertebrate species demonstrated that most resting
 eggs (68–95%) were retrieved by 4 h after ingestion, with maximum gut
 passage times ranging from 16 h for Daphnia magna to 36 h for Artemia
 salina and Thamnocephalus platyurus. Using models that combine migratory
 duck movements with gut passage times, we show that aquatic invertebrates
 may disperse frequently over distances of 15–16 km (median dispersal
 distance) and regularly over distances up to 110–166 km (Q99 distance).
 Increasing propagule size resulted in increasing gut passage times,
 decreasing survival of gut passage and decreasing hatching success. While
 propagule size had no effects on ‘regular’ dispersal distances (mean,
 median, Q95 and Q99), the frequency of long-distance dispersal (LDD)
 increased with it. Increasing propagule size therefore had two contrasting
 effects on invertebrate dispersal potential, decreasing the frequency of
 dispersal (less seeds dispersed) but increasing the potential for
 long-distance dispersal. Conclusions: We provide evidence that
 endozoochory of invertebrate propagules by waterbirds results in frequent
 dispersal among wetlands (tens of km) and regular dispersal at regional
 scale (over a hundred km).
description: Data include the retrieval and hatching rates of
 the resting eggs of five zooplankton species fed to captive shoveler ducks
 and the output (dispersal curves) of models that combine migratory duck
 movements with gut passage times. <br>
DOI: 10.6084/m9.figshare.31168456
title: Optical-Flow-Based Detection of Strength Hold Durations in Elite Still Rings Gymnastics Using Recurrent All-Pairs Field Transforms - Data

description: Optical-Flow-Based Detection of Strength Hold Durations in Elite Still Rings Gymnastics Using Recurrent All-Pairs Field Transforms
DOI: 10.6084/m9.figshare.31168456.v1
title: Optical-Flow-Based Detection of Strength Hold Durations in Elite Still Rings Gymnastics Using Recurrent All-Pairs Field Transforms - Data

description: Optical-Flow-Based Detection of Strength Hold Durations in Elite Still Rings Gymnastics Using Recurrent All-Pairs Field Transforms
DOI: 10.5061/dryad.wwpzgmsn4
title: BETA values from DNA methylation (selected differential regions)

description: Studies of DNA methylation have revealed the biological mechanisms by
 which life adversity confers risk for later physical and mental health
 problems. What remains unknown is the “biologically embedding” of maternal
 adverse experiences resulting in maladaptive parenting and whether these
 epigenetic effects are transmitted to the next generation. This study
 focuses on neglectful mothering indexed by a severe disregard for the
 basic and psychological needs of the child. Using the Illumina Human
 Methylation 850K BeadChip in saliva samples, we identified genes with
 differentially methylated regions (DMRs) in those mothers with, versus
 those without, neglectful behavior (n = 51 vs 87) that present similar
 DMRs patterns in their children being neglected versus non-neglected (n =
 40 vs 75). Mothers reported the emotional intensity of adverse life
 events. After covariate adjustment and multiple testing corrections, we
 identified 69 DMRs in the mother epigenome and 42 DMRs in the child
 epigenome that were simultaneously above the α = 0.01 threshold. The
 common set of nine DMRs contained genes related to childhood adversity,
 neonatal and infant diabetes, child neurobehavioral development, and other
 health problems such as obesity, hypertension, cancer, posttraumatic
 stress, and Alzheimer’s disease; four of the genes were associated with
 maternal life adversity. Identifying a shared epigenetic signature of
 neglect linked to maternal life adversity is an essential step in breaking
 the intergenerational transmission of one of the most common forms of
 childhood maltreatment.
description: This dataset show Beta values from methylation sequencing from
 saliva samples. Only the beta samples of the regions analyzed in the paper
 are shown.  The data is a collection of .rds files
 containing the Beta values. For each row of Table 2 of the main text
 (referred to as the different genes), we extracted the Beta values for the
 differential methylated CpGs between the two groups of mothers. Those CpGs
 correspond within the genomic positions defined in that table by the
 column Genomic coordinates (Start and End). The data was separated by
 files corresponding to the mothers for each gene and children per each
 gene. Two files provide the label for each mother according to her group
 of belonging (control or neglectful) (GroupMothers.rds and
 GroupChildren.rds).
description: R
DOI: 10.5061/dryad.9w0vt4bjj
title: The Atlas of mitochondrial genetic diversity for Western Palearctic butterflies

description: Abstract: MotivationButterflies represent a model in biology and a
 flagship group for invertebrate conservation. We provide four new
 resources for the Western-Palearctic butterflies: 1) An updated checklist
 comprising 552 species; 2) a curated dataset of 32,129 mitochondrial COI
 sequences for 532 species, including a de novo reference library for the
 Maghreb (Morocco and northern Algeria and Tunisia) and Macaronesia
 (Azores, Madeira and Canary Islands); 3) seven indexes of intraspecific
 genetic variation (IGV): observed and expected number of haplotypes,
 haplotype and nucleotide diversity, two fixation indexes, and maximum
 p-distance; 4) species-level maps illustrating the distribution of COI
 variability and haplotype networks. The updated checklist will be
 fundamental for any application dealing with butterfly diversity in
 Western Palearctic. IGV indexes provide measures for genetic polymorphism
 and spatial structure and represent proxies for dispersal capacity. These
 resources will facilitate comparative studies of macrogenetics, will
 foster integrative taxonomy, and will aid conservation strategies. Main
 types of variables containedA complete species checklist in table format,
 32,129 mitochondrial DNA-barcodes provided with metadata (species
 membership, WGS84 coordinates, sequence length), and a book in PDF format
 including the IGV atlas and indexes. Spatial location and grainThe
 checklist encompasses Europe up to Urals in the east, north Macaronesia
 (Azores, Madeira and Canary Islands), as well as the Maghreb (Morocco and
 northern Algeria and Tunisia). DNA-barcodes have been retained in the
 geographic interval of -31.3–67.5 degrees of longitude and 27.5–71.2
 degrees of latitude. Time period and grainDNA-barcodes originate from
 studies published between 1998-2022 and from de novo sequencing of 2,608
 specimens done between 2007-2022. Major taxa and level of
 measurementButterflies (Lepidoptera, Papilionoidea), analysed from
 individual to species level. Software formatData and functions to manage
 the dataset are provided in the iodatabase R package
 (https://github.com/leondap/iodatabase) and in Dryad
description: The dataset of the Atlas of mitochondrial genetic diversity for
 Western Palearctic butterflies (COI sequences and metadata) is available
 in the iodatabase R package available at https://github.com/leondap/iodatabase. Here the R script with a few supplementaty files is available in order to replicate the figures composing the Atlas
DOI: 10.5061/dryad.sqv9s4n6k
title: Geometric latches enable tuning of ultrafast, spring-propelled movements

description: The smallest, fastest, repeated-use movements are propelled by power-dense
 elastic mechanisms, yet the key to their energetic control may be found in
 the latch-like mechanisms that mediate transformation from elastic
 potential energy to kinetic energy. Here we test how geometric latches
 enable consistent or variable outputs in ultrafast, spring-propelled
 systems. We constructed a reduced-order mathematical model of a
 spring-propelled system that uses a torque reversal (over-center)
 geometric latch. We parameterized the model to match the scales and
 mechanisms of ultrafast systems, specifically snapping shrimp. We
 simulated geometric and energetic configurations that enabled or reduced
 variation of their strike durations and dactyl rotations given variation
 of stored elastic energy and latch mediation. We then collected an
 experimental dataset of the energy storage mechanism and ultrafast snaps
 of live snapping shrimp (Alpheus heterochaelis) and compared our
 simulations to their configuration. We discovered that snapping shrimp
 store elastic energy through deformation of the propodus exoskeleton.
 Regardless of the amount of variation in spring loading duration, strike
 durations were far less variable than spring loading durations. When we
 simulated this species’ morphological configuration in our mathematical
 model, we found that the low variability of strike duration is consistent
 with their torque reversal geometry. Even so, our simulations indicate
 that torque reversal systems can achieve either variable or invariant
 outputs through small adjustments to geometry. Our combined experiments
 and mathematical simulations reveal the capacity of geometric latches to
 enable, reduce, or enhance variation of ultrafast movements in biological
 and synthetic systems. 
description: See associated publication for full details about data collection
 and analysis.
description: All files can be opened using a text editor. Code can be run in
 Matlab or R.
DOI: 10.5061/dryad.z8w9ghxfr
title: Satellite telemetry data of Double-crested cormorant locations

description: Avian migrants are challenged by seasonal adverse climatic conditions and
 energetic costs of long-distance flying. Migratory birds may track or
 switch seasonal climatic niche between the breeding and non-breeding
 grounds. Satellite tracking enables avian ecologists to investigate
 seasonal climatic niche and circannual movement patterns of migratory
 birds. The Double-crested Cormorant (Nannopterum auritum, hereafter
 cormorant) wintering in the Gulf of Mexico (GOM) migrate to the Northern
 Great Plains and Great Lakes and is of economic importance because of its
 impacts on aquaculture. We tested the climatic niche switching hypothesis
 that cormorants would switch climatic niche between summer and winter
 because of substantial differences in climate between the non-breeding
 grounds in the subtropical region and breeding grounds in northern
 temperate region. The ordination analysis of climatic niche overlap
 indicated that cormorants had separate seasonal climatic niche consisting
 of seasonal mean monthly minimum and maximum temperature, seasonal mean
 monthly precipitation, and seasonal mean wind speed. Despite
 non-overlapping summer and winter climatic niches, cormorants appeared to
 be subjected to similar wind speed between winter and summer habitats and
 were consistent with similar hourly flying speed between winter and
 summer. Therefore, substantial differences in temperature and
 precipitation may lead to the climatic niche switching of fish-eating
 cormorants, a dietary specialist, between the breeding and non-breeding
 grounds.   
description: Twenty-two double-crested cormorants were fitted with 30- or 45-g
 (about 0.2-0.3% of cormorant body mass) satellite platform transmitter
 terminals (PTT; Microwave Telemetry, Inc.) using a modified backpack
 harness (King and Tobin 2000, King et al. 2012). Satellite transmitters
 were programmed to record locations for six consecutive hours every 48 h
 from October through mid-June and six consecutive hours every ten days
 from mid-June through September.
description: The file is a csv file, which can be opened with Microsoft's
 Excel or a text editor.
DOI: 10.5061/dryad.7h44j0zx7
title: Ecological data of Pseudo-nitzschia delicatissima in the Gulf of Naples

description: We present ecological information regarding the diatom Pseudo-nitzschia
 allochrona and other P. delicatissima-like  species, collected in
 surface waters at long term ecological research (LTER) site, LTER-MC, in
 the Gulf of NAples. Cell density data were obtained for the group
 including P, allochrona, P. arenysensis, P. delicatissima and P. dolorosa,
 which are not distinguishable in light microscopy, and are presented along
 with temperature, salinity and nutrient data collected simultaneously.
 Based on molecular data from isolated strain and metabarcoding,
 Pseudo-nitzschia allochrona was shown to occur invariably only in summer
 and autumn, whereas the other three species were always detected in winter
 or spring. We arbitrarily attributed autumn-winter density data to P.
 allochrona and spring-summer ones to the other three species. This way we
 could investigate the ecological niche of P. allochrona compared
 to that of the closely related species.
description: For the collection and generation of cell abundance data of
 Pseudo-nitzschia, phytoplankton samples were collected in surface waters
 at the LTER-Mc sampling site (40°48.5’N, 14°15’E, Gulf of Naples,
 Mediterranean Sea) with Niskin bottles. Subsamples were placed in 500 ml
 dark glass bottles and immediately fixed with neutralised formaldehyde
 (0.8 % final concentration). A variable amount of fixed sample (3-50 ml)
 was allowed to settle in a cell count chamber. Cells from two transects
 were counted according to the Utermöhl method (Utermöhl, 1958; Andersen
 and Throndsen, 2003), using an inverted microscope (Axiovert 200, Zeiss,
 Germany) equipped with phase contrast at a final magnification of 400X.
 Records of Pseudo-nitzschia cf. delicatissima (including P. delicatissima,
 P. arenysensis, and P. dolorosa) were separated arbitrarily from those of
 <em>P. allochrona</em> based on the period of the year. Based
 on cultured strain genotyping and metabarcoding data, the former are found
 in winter-spring and the latter in autumn-winter. For
 the ancillary environmental parameters,  collection and processing methods
 are found in Sabia, L., Costanzo, A., D’Alcalà, M. R., Saggiomo, V.,
 Zingone, A., & Margiotta, F. (2019). Assessing the quality of
 biogeochemical coastal data: a step-wise procedure. Mediterranean Marine
 Science, 20(1), 56–73. https://doi.org/10.12681/mms.15935
description: Microsoft Excel