cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/kccc8m9pn9.1
title: Multinational survey of attitudes towards recycling urine as fertiliser

description: This data set consists of anonymous survey responses to a standardized survey on attitudes towards recycling human urine as crop fertiliser. The survey was administered online in 2017 and 2018 to university community members from 20 universities in 16 countries, and resulted in 3,763 completed responses. The primary goal was to assess hypothetical willingness to buy and consume food grown with human urine as fertiliser, and the secondary goal was to identify potentially explanatory cross-cultural and country-specific factors. Both raw and cleaned data are provided here, as well as the survey instruments (English original and translated local versions). Data other than open-ended comments in the cleaned sheet (AllData.xlsx) were translated into English where necessary. An index to files and list of variables are given in IndexCodebook.pdf, and the survey methodology and data limitations are described in detail in a forthcoming Data in Brief paper (Barton et al., submitted).
DOI: 10.6084/m9.figshare.1506727
title: cloud2_barcodes_al

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506728.v1
title: cloud2_barcodes_aj

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506724
title: cloud2_barcodes_ah

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506725
title: cloud2_barcodes_ai

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506726
title: cloud2_barcodes_ak

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506727.v1
title: cloud2_barcodes_al

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1512834.v122
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1506724.v1
title: cloud2_barcodes_ah

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506725.v1
title: cloud2_barcodes_ai

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506726.v1
title: cloud2_barcodes_ak

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.17632/4yn7pp92y4.1
title: The fast and accurate computation of eigenvalues and eigenfunctions of time-independent one-dimensional Schrödinger equations

description: In this paper, we present the basic routines of the C++-program Matslise 3.0, an updated but yet restricted version of the matlab package Matslise 2.0. Matslise 3.0 currently allows the accurate, but in comparison to Matslise 2.0, faster computation of eigenvalues and eigenfunctions of one dimensional time-independent Schrödinger problems. The numerical examples show that speed up factors up to 20 (for the eigenvalues) and 200 (for the eigenfunctions) are obtained. These highly optimized routines will enable us, in the near future, to extend Matslise 3.0 to solve time-independent 2D and 3D as well as time-dependent 1D problems.
DOI: 10.6084/m9.figshare.1506722
title: cloud2_barcodes_ag

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506719
title: cloud2_barcodes_ad

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506720
title: cloud2_barcodes_ae

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506721
title: cloud2_barcodes_af

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1512834.v123
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1506719.v1
title: cloud2_barcodes_ad

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506722.v1
title: cloud2_barcodes_ag

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506718
title: cloud2_barcodes_aa

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506720.v1
title: cloud2_barcodes_ae

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506721.v1
title: cloud2_barcodes_af

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506717
title: cloud2_barcodes_ab

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506718.v1
title: cloud2_barcodes_aa

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506716
title: cloudw_barcodes_ac

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1512834.v124
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1506717.v1
title: cloud2_barcodes_ab

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.17632/g74z22ryht.1
title: SimpleBounce: A simple package for the false vacuum decay

description: We present SimpleBounce, a C++ package for finding the bounce solution for the false vacuum decay. This package is based on a flow equation which is proposed by the author R. Sato (2020) and solves Coleman–Glaser–Martin’s reduced problem (S. R. Coleman et al. 1978): the minimization problem of the kinetic energy while fixing the potential energy. The bounce configuration is obtained by a scale transformation of the solution of this problem. For models with 1–8 scalar field(s), the bounce action can be calculated with O(0.1) % accuracy in O(0.1) s. This package is available at http://github.com/rsato64/SimpleBounce.
DOI: 10.6084/m9.figshare.1506716.v1
title: cloudw_barcodes_ac

description: Subset of sequences used in Meadow et al. 2015. See README.txt for details.
DOI: 10.6084/m9.figshare.1506706
title: Realized reproductive success of Florida scrub-jays by immigration

description: The realized reproductive success of Florida scrub-jays breeding in the northern portion of Archbold Biological Station. USFW: US Fish & Wildlife Service band number, unique identifier Sex: Sex of bird, M = male, F = female SourcePop: Place bird was hatched, ABS = northern portion of Archbold Biological Station, PLE = Placid Lake Estates (suburban site), ST = south track of Archbold Biological Station Dispersal Type: local = from northern portion of Archbold Biological Station, s_to_w = from Placid Lakes Estates, w_to_w = from south track of Archbold Biological Station Local_Imm: Local or Immigrant? zBrdr-zHtch: Metric of realized reproductive success, measured as number of breeders produced - number of hatchlings
DOI: 10.6084/m9.figshare.1512834.v125
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1506706.v1
title: Realized reproductive success of Florida scrub-jays by immigration

description: The realized reproductive success of Florida scrub-jays breeding in the northern portion of Archbold Biological Station. USFW: US Fish & Wildlife Service band number, unique identifier Sex: Sex of bird, M = male, F = female SourcePop: Place bird was hatched, ABS = northern portion of Archbold Biological Station, PLE = Placid Lake Estates (suburban site), ST = south track of Archbold Biological Station Dispersal Type: local = from northern portion of Archbold Biological Station, s_to_w = from Placid Lakes Estates, w_to_w = from south track of Archbold Biological Station Local_Imm: Local or Immigrant? zBrdr-zHtch: Metric of realized reproductive success, measured as number of breeders produced - number of hatchlings
DOI: 10.6084/m9.figshare.1506705
title: Suburban immigrants disrupt honest signaling in Florida scrub-jays

description: Data and R scripts associated with Tringali & Bowman 2015. Suburban immigrants to wildlands disrupt honest signaling in ultra-violet plumage. Avian Conservation & Ecology 10(1): 9.
DOI: 10.6084/m9.figshare.1512834.v126
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.17632/2x3kwrtcrw.2
title: Emotional labor

description: Emotional labor, emotional exhaustion, job performance and customer loyalty
DOI: 10.6084/m9.figshare.1506705.v1
title: Suburban immigrants disrupt honest signaling in Florida scrub-jays

description: Data and R scripts associated with Tringali & Bowman 2015. Suburban immigrants to wildlands disrupt honest signaling in ultra-violet plumage. Avian Conservation & Ecology 10(1): 9.
DOI: 10.6084/m9.figshare.1512834.v127
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1506705.v3
title: Suburban immigrants disrupt honest signaling in Florida scrub-jays

description: Data and R scripts associated with Tringali & Bowman 2015. Suburban immigrants to wildlands disrupt honest signaling in ultra-violet plumage. Avian Conservation & Ecology 10(1): 9.
DOI: 10.6084/m9.figshare.1506705.v2
title: Suburban immigrants disrupt honest signaling in Florida scrub-jays

description: Data and R scripts associated with Tringali & Bowman 2015. Suburban immigrants to wildlands disrupt honest signaling in ultra-violet plumage. Avian Conservation & Ecology 10(1): 9.
DOI: 10.6084/m9.figshare.1512834.v128
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1506682
title: DFT study of β-diketiminato iron(II) alkyl and phosphido complexes

description: Article title: Facile, catalytic dehydrocoupling of phosphines using β-diketiminato iron(II) complexes Journal: Chemistry, a European Journal DOI: 10.1002/chem.201503399 Authors: Andrew K. King, Antoine Buchard, Mary F. Mahon and Ruth L. Webster* DFT study: - Optimised geometries and computed free enthalpies of β-diketiminato iron(II) alkyl and phosphido complexes depending on their spin state. - Thermodynamics of reaction between β-diketiminato iron(II) alkyl complex and diphenylphosphine. - Thermodynamics of dimerization reaction of (DIPPNacnac)FePPh2 Protocol: uPBE1PBE/6-311+G(d) (Fe+core ligand)-6-31g(d) (rest of the molecule)/cpcm=benzene/T=343.15K (see basis_set.jpg) except : - [(DIPPNacnac)FePPh2]2 : 6-31g(d) for all atoms - (DIPPNacnac)FePPh2_M062X_m=5 used uM062XE/SDD (Fe)-6-311+G(d) (core ligand)-6-31g(d) (rest of the molecule)/cpcm=benzene/T=343.15K Content: Gaussian09 rev D.01 output files; basis_set.jpg (illustration of basis sets used)
DOI: 10.6084/m9.figshare.1512834.v129
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1506670
title: Presentation for e-Science student competition

description: This is my application for e-Science student competition.
DOI: 10.6084/m9.figshare.1506667
title: Tweets from ICCB-ECCB 2015 meeting

description: Twitter data as collected through Twittter's API ranging from July 22nd to August 10th 2015. For a graphical summary of the data, see https://jlehtoma.github.io/iccb2015-tweets/
DOI: 10.6084/m9.figshare.1506682.v1
title: DFT study of β-diketiminato iron(II) alkyl and phosphido complexes

description: Article title: Facile, catalytic dehydrocoupling of phosphines using β-diketiminato iron(II) complexes Journal: Chemistry, a European Journal DOI: 10.1002/chem.201503399 Authors: Andrew K. King, Antoine Buchard, Mary F. Mahon and Ruth L. Webster* DFT study: - Optimised geometries and computed free enthalpies of β-diketiminato iron(II) alkyl and phosphido complexes depending on their spin state. - Thermodynamics of reaction between β-diketiminato iron(II) alkyl complex and diphenylphosphine. - Thermodynamics of dimerization reaction of (DIPPNacnac)FePPh2 Protocol: uPBE1PBE/6-311+G(d) (Fe+core ligand)-6-31g(d) (rest of the molecule)/cpcm=benzene/T=343.15K (see basis_set.jpg) except : - [(DIPPNacnac)FePPh2]2 : 6-31g(d) for all atoms - (DIPPNacnac)FePPh2_M062X_m=5 used uM062XE/SDD (Fe)-6-311+G(d) (core ligand)-6-31g(d) (rest of the molecule)/cpcm=benzene/T=343.15K Content: Gaussian09 rev D.01 output files; basis_set.jpg (illustration of basis sets used)
DOI: 10.6084/m9.figshare.1512834.v130
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1506670.v2
title: Presentation for e-Science student competition

description: This is my application for e-Science student competition.
DOI: 10.6084/m9.figshare.1505341
title: Epidemic History and Iatrogenic Transmission of Blood-borne Viruses in Mid-20th Century Kinshasa

description: Database on risk factors on analysis of risk factors for seroprevalence of HCV and HTLV-1.
DOI: 10.6084/m9.figshare.1506667.v2
title: Tweets from ICCB-ECCB 2015 meeting

description: Twitter data as collected through Twittter's API ranging from July 22nd to August 10th 2015. For a graphical summary of the data, see https://jlehtoma.github.io/iccb2015-tweets/
DOI: 10.6084/m9.figshare.1512834.v131
title: Localized Protein Quantification of Blood Brain Barrier Vasculature in Brightfield IHC Images

description: In this paper, we present an objective method for locally quantifying proteins in blood brain barrier (BBB) vasculature using standard immunohistochemistry (IHC) techniques and bright-field microscopy. Images from the hippocampal region at the BBB are acquired using bright-field microscopy and subjected to our immunohistochemistry quantification (IQ) algorithm which is designed to automatically identify and segment microvessels containing the protein glucose transporter 1 (GLUT1). Gabor filtering and k-means clustering are employed to isolate potential vascular structures within cryopsectioned slabs of the hippocampus, which are subsequently subjected to feature extraction followed by classification via decision forest. The false positive rate (FPR) of microvessel classification is characterized using synthetic and non-synthetic IHC image data for image entropies ranging between 3 and 8 bits. The average FPR for synthetic and non-synthetic IHC image data was found to be 5.48% and 5.04%, respectively.
DOI: 10.6084/m9.figshare.1505340
title: Permeability data_Kuang and Jiao 2014 GRL

description: permeability data from different depths and 13 different data sources