cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.20371/inaf/ds/2022_00002
title: Experimental Absorption Coefficients of carbon dioxide at high pressure and high temperature

description: This data base is dedicated to the experimental CO2 absorption spectra, obtained according to a realistic vertical P-T profile, typical of the deep and middle atmosphere of Venus. These spectra have been recorded by using a Fourier Trans-form InfraRed (FT-IR) spectrometer , coupled with a gas cell, designed to support pressures up to 200 bar and temperatures up to about 600 K and characterized by an optical path of 2 cm. Each spectrum was acquired in the spectral range [800-1000] cm-1 with a resolution of 2 cm-1. In the data base on can been found the ascii file, divided by directories, ‘’middle latitude’’ and ‘’deep Atmosphere”. The name of each file refers to the conditions (p, T) at the which the spectra have been measured. For other details please refers to the attached article.
DOI: 10.20371/inaf/ds/2022_00005
title: CO2 Collisional Induced Absorption (CIA) database

description: This database is dedicated to the experimental CO2 collision induced absorption (CIA) bands in two spectral regions, [1100–1600] cm−1 and [2500–3150] cm−1. The spectra have been recorded by averaging 150 scans with a resolution of 2 cm−1 acquired for temperatures from 294 to 473 K and at pressures ranging from 1 to 40 bar. The absorption coefficients (cm-1) published in this data base have been divided in five folders, named according to the temperatures at the which the spectra have been acquired. Each folders contains two directories, the ‘’main’’ and ‘’divided’’. In the ‘’main’’ the row data can be downloaded while in the ‘’divided’’ the ascii files related to the two spectral range have been uploaded. In the last case, only a preliminary base line correction has been done, please note that some data, in between [1100-1660] cm-1 are affected by a strong water vapour absorption. Th
 e name of each file refers to the conditions (p, T) at the which the spectra have been measured. For other details please refers to the attached article.
DOI: 10.48670/moi-00027
title: Atlantic-Iberian Biscay Irish- Ocean Physics Analysis and Forecast
DOI: 10.5281/zenodo.10715160
title: Spatiotemporal brain hierarchies of auditory memory recognition and predictive coding - Nature Communications

description: The full analysis pipeline used in this study is available at the following link: 

https://doi.org/10.5281/zenodo.11072410

Additional in-house-built code and functions used in this study are part of the LBPD repository which is available at the following link: 

https://doi.org/10.5281/zenodo.10701724

 

Abstract

Our brain is constantly extracting, predicting, and recognising key spatiotemporal features of the physical world in order to survive. While neural processing of visuospatial patterns has been extensively studied, the hierarchical brain mechanisms underlying conscious recognition of auditory sequences and the associated prediction errors remain elusive. Using magnetoencephalography (MEG), we describe the brain functioning of 83 participants during recognition of previously memorised musical sequences and systematic variations. The results show feedforward connections originating from auditory cortices, and extending to the hippocampus, anterior cingulate gyrus, and medial cingulate gyrus. Simultaneously, we observe backward connections operating in the opposite direction. Throughout the sequences, the hippocampus and cingulate gyrus maintain the same hierarchical level, except for the final tone, where the cingulate gyrus assumes the top position within the hierarchy. The evoked responses of memorised sequences and variations engage the same hierarchical brain network but systematically differ in terms of temporal dynamics, strength, and polarity. Furthermore, induced-response analysis shows that alpha and beta power is stronger for the variations, while gamma power is enhanced for the memorised sequences. This study expands on the predictive coding theory by providing quantitative evidence of hierarchical brain mechanisms during conscious memory and predictive processing of auditory sequences.

 

The data is provided after pre-processing (Maxfilter, ICA for removing eye blink and heart beat, co-registration with the individual MRI T1) and epoching.

Source data files are provided for Supplementary Figures and Tables (referred to as Supplementary Data in the paper).

Supplementary Figures are provided in PDF format in high resolution.
DOI: 10.5281/zenodo.12749130
title: Data for M. Kędziora, et al. "Predesigned perovskite crystal waveguides for room temperature exciton-polariton condensation and edge-lasing". Nature Materials.

description: The repository contains data to generate figures from "Predesigned perovskite crystal waveguides for room temperature exciton-polariton condensation and edge-lasing", Nature Materials (2024).
DOI: 10.5281/zenodo.13286259
title: Data for "Early Pleistocene orbital-scale variability in Australian Northwest Shelf sediments" submitted to Paleoceanography and Paleoclimatology

description: Data of XRF scanning counts, ICP-OES, calibrated XRF results and environmental magnetism at IODP Site U1464 on the Australian Northwest Shelf.
DOI: 10.5281/zenodo.13362425
title: ScO: A-X band system PGOPHER simulation, Lavy et al 2024

description: ================================================================================Title: The A^2^{Pi} - X^2^{Sigma}^+ band system of ScO forM-type star spectral analysis Authors: Lavy L., Pastorek A, Bernath P.F. ================================================================================Description of contents: file "ScO.pgo".

System requirements: This file is a text file. It is also readable by    the program PGOPHER (C. M. Western, Journal of Quantitative    Spectroscopy and Radiative Transfer, 186 221-242 (2017)    doi:10.1016/j.jqsrt.2016.04.010).

Additional comments: The file contains the published spectroscopic    constants, band strengths assigned lines. In PGOPHER, the user     can use this file to determine the algebraic formulas of the matrix     elements of the Hamiltonian and simulate the spectrum of ScO.

================================================================================
DOI: 10.5281/zenodo.7600341
title: Species-level phylogenetic trees of all angiosperm species (100 trees)

description: One hundred species-level trees of all angiosperms (zip file) comprising all 329,798 species recognized by version 6 of the World Checklist of Vascular Plants. Details of how these trees were compiled is provided, as well as a spreadsheet listing the familial and ordinal assignation of each species in the trees.
DOI: 10.6084/m9.figshare.23790264
title: Image-guided computational holographic wavefront shaping

description: Source code and measurement data sample used for the paper "Image-guided Computational Holographic Wavefront Shaping".
DOI: 10.6084/m9.figshare.24922497
title: example data for Figure 2 and Figure 4

description: Voltage imaging provides a direct measure of neuronal activity and holds significant promise for understanding information processing within individual neurons and across populations. However, imaging voltage over large neuronal populations has been challenging due to the simultaneous requirements of high imaging speed and signal-to-noise ratio, large volume coverage and low photobleaching rate. To overcome this challenge, we developed a confocal light field microscope that surpassed the traditional limits in speed and noise performance by incorporating speed-enhanced camera, fast and robust scanning mechanism, laser-speckle-noise elimination and optimized light efficiency, enabling long-term volumetric voltage imaging. With this method, we achieved simultaneous recording from more than 300 spiking neurons within an 800 µm diameter and 180 µm thick volume in the mouse cortex, for more than 20 minutes. By integrating the spatial and voltage activity profiles, we have mapped three-dimensional neural coordination patterns in awake mouse brain. Our advancements present a robust method for routine application in volumetric voltage imaging.
DOI: 10.6084/m9.figshare.27193509
title: Supplementary Material for: Phosphorus restriction prevents rapamycin-induced kidney damage in rats

description: Introduction: There are conflicting reports about the effect or rapamycin on the kidneys. Rapamycin is known to promote phosphaturia that may be associated to renal injury. Methods: Detailed histopathological studies were performed on the kidneys of rats with normal (Control) and reduced (Nx) renal mass that were treated with rapamycin (1.3 mg/kg for 22 days) or placebo. The effect of rapamycin was also evaluated in Control and Nx rats fed different amounts of phosphorus: 0.6% P (NP), 1.2% P (HP) and 0.2% P (LP). Quantitative scores of kidney lesions were obtained for: interstitial nephritis (IN), tubular damage (TD), and nephrocalcinosis (NC). Results: When compared with placebo, rapamycin administration to Nx rats resulted in significant increases in IN (4.17±0.74 vs 1.51±0.53 %) and TD (14.45±1.51 vs 8.61±1.83 %). Rapamycin also increased NC both in Control (0.86±0.23 vs 0.14±0.06 %) and Nx (0.86±0.32 vs 0.15±0.14 %) rats. In Control rats receiving rapamycin, feeding HP aggravated IN (3.25±0.48 %), TD (22.47±4.56 %) and NC (3.66±0.75 %) while feeding LP prevented development of any renal lesions. In Nx rats treated with rapamycin, HP intake also increased IN (8.95±1.94 %), TD (26.86±3.95 %) and NC (2.77±0.60 %) whereas feeding LP reduced all lesions to lower levels than in rats fed NP. Rapamycin treatment increased fractional excretion of P (FEP) and an excellent correlation between scores for renal lesions and FEP was found. Conclusion: Rapamycin has deleterious effects on kidney pathology causing lesions that are located mainly at tubular and tubulo-interstitial level. Rapamycin-induced kidney damage is more evident in rats that already have decreased renal function and seems to be related to the phosphaturic effect of the drug. Dietary P restriction prevents kidney damage in rats treated with rapamycin.
DOI: 10.15151/esrf-es-953231302
title: Synthesis of novel YFe2H(x&gt;10) compounds up to 100 GPa: a possibility to recover a high content H-storage material at ambient pressure

description: Hydrogen uptake by a metal drastically increases under high hydrogen pressure. New polyhydrides compounds are interesting as H-storage materials and hold great promise as high temperature superconductors. Pressures in the 100 GPa range have to be applied and unfortunately none of these novel Metal-Hydrogen compounds is metastable at ambient pressure. Hence, there is now great interest to form such H-rich compounds at high pressure and to recover them at ambient pressure by adding a third element. The aim of this proposal is to show that searching for ternary hydrides is indeed a good strategy. We performed ab-initio calculations showing that YFe2H10 is predicted to form at about 20 GPa and that it could be recovered metastable at ambient pressure. YFe2 alloy will be compressed in excess hydrogen and the formation of YFe2Hx compounds will be characterized by a detailed structural study at various pressures. The metastability of the YFe2H at ambient pressure will be investigated.
DOI: 10.15482/usda.adc/1526540
title: Data from: 'Drowning in Drought': County-level drought vulnerability and adaptive capacity of New Mexico Ranchers

description: To capture the nuances of drought experiences across New Mexico, semi-structured interviews were conducted with New Mexico State University (NMSU) Cooperative Extension Service (CES) agents (livestock, 4-H, Tribal) across the state in June-September 2020. The interviews were guided by the questions “does region matter [for drought adaptation differences], and on what?”  Interview questions were phrased to gauge county ranch and rancher characteristics; clientele perceptions of climate change and drought; ranchers’ relationships with agents; challenges posed by drought, climate, and climate change; adaptation strategies; informational sources and other resources; and climate/drought solution visions for the future. Upon the conclusion of data collection, 15 Extension professionals were interviewed. The purpose of collecting this data is to understand sources of variability that influence vulnerability at more localized scales. With this understanding, the ability to withstand drought impacts across heterogeneous landscapes can be improved.
DOI: 10.17171/1-1
title: Ancient Sundials
title: The repository contains all digital data such as images, 3d models and analysis which were acquired in the Ancient Sundials Project.

description: In antiquity, sundials served mainly for timekeeping, but were only functional under consideration of the respective geographical latitudes. Furthermore, different types of sundials have been distinguished, such as conical, spherical, cylindrical or planar. Even smaller, portable specimen exist. The research project aims to re-analyze as many as possible of the 550 to 600 known Greek or Roman sundials using modern analytical methods such as 3D modeling. Modern technologies allow insights into the level of ancient knowledge and its dissemination in the ancient world. The sources allow to derive more precise classifications of ancient sundials and to decipher their design or construction principles. The descriptions of the sundials so far used in this context regarding materials and dating are based - at least in part - on the research literature of the respective objects. As a result, different terms may be used for identical objects. These terms will be harmonized in the long term.
DOI: 10.17632/82bmr5shtv.2
title: VLFData

description: These folder contain row data of three European VLF transmitters recorded at Algiers station
DOI: 10.17909/pv1h-ta47
title: NIRCam Serpens data

description: We present deep 1.4-4.8 μm JWST-NIRCam imaging of the Serpens Main star-forming region and
identify 20 candidate protostellar outflows, most with bipolar structure and identified driving sources.
DOI: 10.18434/mds2-3022
title: Correlating Near-Infrared Spectra to Bulk Properties in Polyolefins
DOI: 10.24432/c5gk50
title: Breast Cancer Wisconsin (Prognostic)
DOI: 10.25574/cdc.201
title: Chandra X-ray Observatory Chandra Data Collection for request #201

description: Chandra Data Collection for request #201
description: DOI updated to include the publication's DOI on 2024-09-17-14:30:00
DOI: 10.26066/rds.3924
title: Outline Boundary of Hindu Kush Himalayan (HKH) Region

description: The dataset provides an outline boundary of Hindu Kush Hiamalayan (HKH) region The dataset
has been developed from ESRI Map & Data 2001 and is in 1:1 million scale.
DOI: 10.3886/e165841v1
title: Code for: Innovation-Led Transitions in Energy Supply

description: Matlab replication code for the publication in American Economic Journal: Macroeconomics, accepted in 2022. Abstract of the article:<br>Generalizing models of directed technical change, I show that complementarities between innovations and factors of production (here energy resources) can drive transitions away from a dominant sector. In a calibrated numerical implementation, the economy gradually transitions energy supply from coal to gas and then to renewable energy even in the absence of policy. The welfare-maximizing tax on carbon emissions is J-shaped, immediately redirects most research to renewables, and rapidly transitions energy supply directly to renewables. The emission tax is twice as valuable as either the welfare-maximizing research subsidy or the welfare-maximizing mandate to use renewable resources. <br><br>
DOI: 10.5281/zenodo.10069628
title: distinct mesenchymal cell states mediate prostate cancer progression

description: These are the count matrices (in .h5ad format) used to produce the results and figures in the paper entitled "distinct mesenchymal cell states mediate prostate cancer progression". 

adata_mouse.h5ad: the normalized count matrix and cell annotations for the mesenchymal prostate data from all mouse models.
adata_mouse_myo.h5ad: the normalized count matrix for the myofibroblasts and pericytes (both are c0).
scenic_mesenchyme_auc.csv: the auc matrix of the regulons activity in the different cells and clusters in the mouse mesenchymal data.
scenic_mesenchyme_binary.csv: the binary matrix of regulons activity in the mouse mesenchymal data.
adata_human.h5ad: the normalized count matrix and cell annotations for the mesenchymal human primary prostate cancer data.
adata_human_boneMet_stroma.h5ad: the normalized count matrix and cell annotation for the bone metastasis data derived from Kfoury et al.
visium_PRN.h5ad: the normalized count matrix and cell annotation for the Visium spatial transcriptomics data of the PRN mouse model.
visium_WT.h5ad: the normalized count matrix and cell annotation for the Visium spatial transcriptomics data of the WT (PRN-WT) mouse model.
DOI: 10.5281/zenodo.11243025
title: Risk-of-bias v.2 assessment with large language models

description: See https://bitbucket.org/aimedtech/fewshot_rob for more information.
DOI: 10.5281/zenodo.11402792
title: Quantum Dots Stability Diagrams Dataset

description: This Quantum Dots Stability Diagrams (QDSD) Dataset aggregates experimental stability diagrams of quantum dots from different research groups.

For more information about the data processing, refer to the GitHub repository.

Only the interpolated_csv.zip and labels.json files are necessary for offline tuning or machine-learning tasks.

Currently, only single-dot stability diagrams are labeled.

The original data have been provided by different research groups based on the following references:



Rochette et al. 2019

Gaudreau et al. 2009

Stuyck et al. 2021


See the README.md for files description.
DOI: 10.5281/zenodo.13463529
title: Data and scripts for "Inhibition of phototrophic iron oxidation by nitric oxide in ferruginous environments"

description: Enclosed is the supporting data for manuscript entitled "Inhibition of phototrophic iron oxidation by nitric oxide in ferruginous environments"

This resource includes:

Files 1 & 2: Excel files containing the data used in plotting main text and extended data figures

Files 3 - 6: Scripts and model outputs 

File 7: Supplementary tables for Bioinformatics analyses
DOI: 10.5281/zenodo.13970203
title: Effect of planetary boundary layer evolution on new particle formation events over Cyprus

description: The data set is related to the article:

Effect of planetary boundary layer evolution on new particle formation events over Cyprus.



Neha Deot1, Vijay P. Kanawade1,2, Alkistis Papetta1, Rima Baalbaki3,1, Michael Pikridas1, Franco Marenco1, Markku Kulmala3, Jean Sciare1, K. Lehtipalo3,4, Tuija Jokinen1

 
description: The destcription for the time series of size-segregated  (>2.5nm, 2.5-25nm, 7-25nm, and 2.5-7nm) ion and particle number concentrations from NAIS (10-minute medians) is: 

 

"2p5" - refers to 2.5 

"in" - refers to ions negative

"ip" - refers to ions positive

"pn" - refers to particles negative

"pp" - refers to particles positive
DOI: 10.5281/zenodo.268464
title: Kemerer

description: None
DOI: 10.5281/zenodo.268467
title: Effort Estimation: Albrecht

description: Dataset used for Effort Estimation

<strong>Reference</strong>

Albrecht, A.J. and Gaffney, J.E., Jr. (1983) Software Function, Source Lines of Code, and Development Effort Prediction: A Software Engineering, IEEE Transactions on Software Engineering, 9(6):639-648
DOI: 10.5281/zenodo.3574566
title: JRC Open Power Plants Database (JRC-PPDB-OPEN)

description: In 2017 the Joint Research Centre developed a Power Plant Database for energy systems modelling (JRC-PPDB) in order to support the unit activities in energy systems modelling and knowledge management. As demand for open data is increasingly sought after, an open version (JRC-PPDB-OPEN), based on exclusively open data was designed. The JRC-PPDB-OPEN is primarily based on a collection of all the information published by ENTSO-E[1] on the European power plants at unit level. This information was extended, improved, and where possible corrected using information contained in open datasets published by WRI Powerwatch[2], Global energy observatory[3], FRESNA[4] and the EEA[5]. The JRC-PPDB-OPEN database is a first attempt towards a more detailed and coherent, albeit still incomplete, dataset of European power plants. Further work to expand and improve the information contained therein is called for. To this extend, and in order to facilitate the future involvement of third parties in such efforts, the associations between records in the different datasets (linkage) are included. [1] https://transparency.entsoe.eu/ [2] http://datasets.wri.org/dataset/globalpowerplantdatabase [3] http://globalenergyobservatory.org/ [4] https://github.com/FRESNA/powerplantmatching [5] https://prtr.eea.europa.eu/#/home
DOI: 10.5281/zenodo.7750456
title: Replication package for the paper: "Towards Effective Gamification of Existing Systems: Method and Experience Report"

description: This is the replication package for the paper: "Towards Effective Gamification of Existing Systems: Method and Experience Report", submitted to Software Quality Journal.

It contains all the artifacts used to conduct our study.
DOI: 10.5281/zenodo.7798350
title: ESSD benchmark output data

description: This dataset contains the ESSD benchmark output data. Visit https://github.com/EUPP-benchmark/ESSD-benchmark for more information. This dataset is provided as supplementary material with: Demaeyer, J., Bhend, J., Lerch, S., Primo, C., Van Schaeybroeck, B., Atencia, A., Ben Bouallègue, Z., Chen, J., Dabernig, M., Evans, G., Faganeli Pucer, J., Hooper, B., Horat, N., Jobst, D., Merše, J., Mlakar, P., Möller, A., Mestre, O., Taillardat, M., and Vannitsem, S.: The EUPPBench postprocessing benchmark dataset v1.0, Earth Syst. Sci. Data Discuss. [preprint], https://doi.org/10.5194/essd-2022-465, in review, 2023. Please cite this article if you use (a part of) this code for a publication. <br> Description of the methods used to get the ESSD benchmark output data<br> ------------------------------------------------------------------------------------------------------- - ANET: NN post processing method using ensemble member encoders and dynamic attention<br> Repository: https://github.com/EUPP-benchmark/ESSD-ANET<br> <br> - AR-EMOS: EMOS with heteroscedastic autoregressive error adjustments<br> Repository: https://github.com/EUPP-benchmark/ESSD-AR-EMOS<br> <br> - ASRE: Accounting for systematic and representativeness errors<br> Repository: https://github.com/EUPP-benchmark/ESSD-ASRE<br> <br> - DRN: Distributional regression network<br> Repository: https://github.com/EUPP-benchmark/ESSD-DRN<br> <br> - DVQR: D-vine copula based postprocessing<br> Repository: https://github.com/EUPP-benchmark/ESSD-D-Vine-Copula<br> <br> - EMOS: Ensemble model output statistics<br> Repository: https://github.com/EUPP-benchmark/ESSD-EMOS<br> <br> - RC: Reliability Calibration (IMPROVER)<br> Repository: https://github.com/EUPP-benchmark/ESSD-reliability-calibration<br> <br> - MBM: Member-By-Member postprocessing<br> Repository: https://github.com/EUPP-benchmark/ESSD-mbm
DOI: 10.5439/1350681
title: ARM: Station-based Surface Products

description: Station-based Surface Products
DOI: 10.5439/1989601
title: 30qcecor (s1)

description: 30qcecor