cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26189864.v1
title: A rapid spectrophotometric test for assessing skin sensitization potential of chemicals by using <i>N</i>-acetyl-L-cysteine methyl ester <i>in chemico</i>

description: During the key event 1 of skin sensitization defined as covalent binding or haptenization of sensitizer to either thiol or amino group of skin proteins, a sensitizer not only covalently binds with skin proteins but also interacts with nucleophilic small molecules such as glutathione (GSH). Although GSH would not be directly associated with skin sensitization, this interaction may be applied for developing an alternative test method simulating key event 1, haptenization. Thus, the aim of the present study was to examine whether <i>N</i>-acetyl-L-cysteine methyl ester (NACME), a thiol-containing compound, was selected as an electron donor to determine whether NACME reacted with sensitizers. Following a reaction of NACME with a sensitizer in a 96-well plate, the remaining NACME was measured spectrophotometrically using 5,5’-dithio-bis-(2-nitrobenzoic acid) (DTNB). Following the optimization of test conditions with two different vehicles, such as acetonitrile (ACN) and dimethyl sulfoxide (DMSO), 64 test chemicals were tested to determine the predictive capacity of current NACME test method. The results obtained showed, the predictive capacity of 94.6% sensitivity, 88.9% specificity, and 92.2% accuracy utilizing DMSO as a vehicle with a cutoff NACME depletion of 5.85%. The three parameters were also over 85% in case of ACN. These values were comparable to or better than other OECD-approved test methods. Data demonstrated that a simple thiol-containing compound NACME might constitute as a reliable candidate for identifying reactive skin sensitizers, and that this method be considered as practical method as a screening tool for assessing a chemical’s tendency to initiate skin sensitization.
DOI: 10.15468/dl.6djekx
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.127575 -35.686278, 147.127575 -35.688524, 147.132067 -35.688524, 147.132067 -35.693015, 147.134312 -35.693015, 147.134312 -35.695261, 147.132067 -35.695261, 147.132067 -35.697507, 147.134312 -35.697507, 147.134312 -35.701999, 147.14105 -35.701999, 147.14105 -35.704244, 147.154525 -35.704244, 147.154525 -35.701999, 147.15677 -35.701999, 147.15677 -35.693015, 147.152279 -35.693015, 147.152279 -35.688524, 147.147787 -35.688524, 147.147787 -35.686278, 147.127575 -35.686278), (147.143296 -35.693015, 147.147787 -35.693015, 147.147787 -35.695261, 147.150033 -35.695261, 147.150033 -35.697507, 147.143296 -35.697507, 147.143296 -35.693015))"
 ]
}

 The dataset includes 64 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074463-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10668641
title: Data For Scalco et al. Clinicopathological correlates of quantitative Amyloid-B Pathology in the Temporal Cortex: Machine learning analysis of 131 cases from an ADRC

description: Dataset containing 131 de-identified whole slide images (WSIs) with a respective data dictionary. 

Paper: Scalco, R., Oliveira, L.C., Lai, Z. et al. Machine learning quantification of Amyloid-β deposits in the temporal lobe of 131 brain bank cases. acta neuropathol commun 12, 134 (2024). https://doi.org/10.1186/s40478-024-01827-7

Details: A total of 131 .svs. WSIs, de-identified using svs-deidentifier v 0.9.1-beta (https://github.com/pearcetm/svs-deidentifier/releases). Dataset is uploaded in batches due to Zenodo data upload limitations.

Slide curation/preparation: All samples were retrieved from archives of the University of California, Davis Alzheimer’s Disease Center Brain Bank (https://www.ucdmc.ucdavis.edu/alzheimers/). Archival samples analyzed in this study were 5 μm formalin fixed, paraffin embedded sections of the superior and middle temporal gyrus from human brain. The tissue had been previously stained with an amyloid-β antibody (4G8, recognizing residues 17-24, BioLegend, formerly Covance) that were first pretreated with formic acid to rid samples of endogenous protein. All slides were digitized using an Aperio AT2 between 20x and 40x magnification.

Code: Please refer to https://github.com/ucdrubinet/BrainSec and https://github.com/keiserlab/plaquebox-paper
DOI: 10.5281/zenodo.10668642
title: Data For Scalco et al. Clinicopathological correlates of quantitative Amyloid-B Pathology in the Temporal Cortex: Machine learning analysis of 131 cases from an ADRC

description: Dataset containing 131 de-identified whole slide images (WSIs) with a respective data dictionary. 

Paper: Scalco, R., Oliveira, L.C., Lai, Z. et al. Machine learning quantification of Amyloid-β deposits in the temporal lobe of 131 brain bank cases. acta neuropathol commun 12, 134 (2024). https://doi.org/10.1186/s40478-024-01827-7

Details: A total of 131 .svs. WSIs, de-identified using svs-deidentifier v 0.9.1-beta (https://github.com/pearcetm/svs-deidentifier/releases). Dataset is uploaded in batches due to Zenodo data upload limitations.

Slide curation/preparation: All samples were retrieved from archives of the University of California, Davis Alzheimer’s Disease Center Brain Bank (https://www.ucdmc.ucdavis.edu/alzheimers/). Archival samples analyzed in this study were 5 μm formalin fixed, paraffin embedded sections of the superior and middle temporal gyrus from human brain. The tissue had been previously stained with an amyloid-β antibody (4G8, recognizing residues 17-24, BioLegend, formerly Covance) that were first pretreated with formic acid to rid samples of endogenous protein. All slides were digitized using an Aperio AT2 between 20x and 40x magnification.

Code: Please refer to https://github.com/ucdrubinet/BrainSec and https://github.com/keiserlab/plaquebox-paper
DOI: 10.15468/dl.fhrjjp
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cebus aequatorialis J.A.Allen, 1914"
 ]
}

 The dataset includes 122 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074464-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7krdr
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andrena rehni Viereck, 1907"
 ]
}

 The dataset includes 140 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074465-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3gh66m
title: Occurrence Download

description: A dataset containing 6676 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-53.00362 51.53049,-53.87491 52.54284,-57.84413 50.98523,-59.3931 49.62504,-60.94206 47.77233,-58.90905 46.38801,-56.68241 45.513,-52.51957 45.513,-49.80888 46.72087,-53.00362 51.53049))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Uria aalge (Pontoppidan, 1763)"
 ]
}

 The dataset includes 6676 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074466-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d5zg4b
title: Occurrence Download

description: A dataset containing 211 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen)",
 "TaxonKey is Sceloporus subniger Poglayen & Smith, 1958"
 ]
}

 The dataset includes 211 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074467-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8hx8d
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((147.100625 -35.704244, 147.100625 -35.701999, 147.093888 -35.701999, 147.093888 -35.697507, 147.087151 -35.697507, 147.087151 -35.695261, 147.07143 -35.695261, 147.07143 -35.697507, 147.069184 -35.697507, 147.069184 -35.701999, 147.062447 -35.701999, 147.062447 -35.70649, 147.057955 -35.70649, 147.057955 -35.710982, 147.073676 -35.710982, 147.073676 -35.708736, 147.078167 -35.708736, 147.078167 -35.710982, 147.089396 -35.710982, 147.089396 -35.704244, 147.093888 -35.704244, 147.093888 -35.710982, 147.096134 -35.710982, 147.096134 -35.713228, 147.100625 -35.713228, 147.100625 -35.710982, 147.102871 -35.710982, 147.102871 -35.708736, 147.107363 -35.708736, 147.107363 -35.710982, 147.109609 -35.710982, 147.109609 -35.713228, 147.111854 -35.713228, 147.111854 -35.715473, 147.116346 -35.715473, 147.116346 -35.717719, 147.125329 -35.717719, 147.125329 -35.713228, 147.123083 -35.713228, 147.123083 -35.710982, 147.118592 -35.710982, 147.118592 -35.704244, 147.123083 -35.704244, 147.123083 -35.701999, 147.118592 -35.701999, 147.118592 -35.697507, 147.123083 -35.697507, 147.123083 -35.695261, 147.118592 -35.695261, 147.118592 -35.688524, 147.116346 -35.688524, 147.116346 -35.69077, 147.109609 -35.69077, 147.109609 -35.695261, 147.102871 -35.695261, 147.102871 -35.704244, 147.100625 -35.704244), (147.096134 -35.704244, 147.100625 -35.704244, 147.100625 -35.708736, 147.096134 -35.708736, 147.096134 -35.704244)), ((147.102871 -35.710982, 147.102871 -35.713228, 147.107363 -35.713228, 147.107363 -35.710982, 147.102871 -35.710982)), ((147.125329 -35.713228, 147.14105 -35.713228, 147.14105 -35.710982, 147.134312 -35.710982, 147.134312 -35.708736, 147.125329 -35.708736, 147.125329 -35.713228)))"
 ]
}

 The dataset includes 98 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074470-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hakdn9
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Epidendrum miserrimum Rchb.f."
 ]
}

 The dataset includes 13 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074471-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pckhej
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((146.849096 -35.715473, 146.849096 -35.717719, 146.855833 -35.717719, 146.855833 -35.719965, 146.8738 -35.719965, 146.8738 -35.717719, 146.869308 -35.717719, 146.869308 -35.715473, 146.849096 -35.715473))"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074472-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.he4v78
title: Occurrence Download

description: A dataset containing 6118 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Gyrinophilus porphyriticus (Green, 1827))"
 ]
}

 The dataset includes 6118 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074473-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9aya5d
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.132067 -35.717719, 147.132067 -35.719965, 147.138804 -35.719965, 147.138804 -35.717719, 147.132067 -35.717719))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074474-240626123714530/datasets/export for details.
DOI: 10.15468/dl.nx4mkz
title: Occurrence Download

description: A dataset containing 126205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "Geometry POLYGON((-74.87296 5.80115,-74.84706 5.80019,-74.82164 5.80592,-74.80869 5.82835,-74.80581 5.85125,-74.80858 5.9035,-74.80542 5.91632,-74.81217 5.92914,-74.81985 5.93128,-74.83304 5.92517,-74.84686 5.9151,-74.85146 5.90594,-74.86341 5.89661,-74.86742 5.87347,-74.89267 5.8315,-74.89026 5.80996,-74.87296 5.80115))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 126205 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074469-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qxetrz
title: Occurrence Download

description: A dataset containing 211 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen)",
 "TaxonKey is Sceloporus subniger Poglayen & Smith, 1958"
 ]
}

 The dataset includes 211 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074475-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13343344
title: Data associated with the manuscript: Andean bear tree selectivity for scent-marking in Ecuadorian cloud forests

description: This is the original version of data used for the manuscript, Andean bear tree selectivity for scent-marking in Ecuadorian cloud forests. The data are in four files following the numerical order and titles of the Results section in the manuscript, i.e. 1_PCA.csv, 2_Modeling tree selection at the individual-tee level.csv, 3_Modeling tree selection on a local spatial scale.csv, 4_Modeling formation of marked-tree cluster sites.csv. We used these datasets for our analysis in the program R, the details are provided in the Methods section. Our field work was performed in compliance with the Framework Agreement for access to genetic resources called "Biodiversity Study of Ecuador '' made between the Ecuadorian Ministry of Environment and the UTPL. The code for the Agreement is MAE-DNB-CM-2015-0016-M-0002. The research was funded by Bears in Mind, International Association for Bear Research and Management, the Faculty of Environmental Sciences of Czech University of Life Sciences in Prague, National Geographic Society, Nature and Culture International, GIZ Ecuador, and Trailcampro.
DOI: 10.5281/zenodo.13343345
title: Data associated with the manuscript: Andean bear tree selectivity for scent-marking in Ecuadorian cloud forests

description: This is the original version of data used for the manuscript, Andean bear tree selectivity for scent-marking in Ecuadorian cloud forests. The data are in four files following the numerical order and titles of the Results section in the manuscript, i.e. 1_PCA.csv, 2_Modeling tree selection at the individual-tee level.csv, 3_Modeling tree selection on a local spatial scale.csv, 4_Modeling formation of marked-tree cluster sites.csv. We used these datasets for our analysis in the program R, the details are provided in the Methods section. Our field work was performed in compliance with the Framework Agreement for access to genetic resources called "Biodiversity Study of Ecuador '' made between the Ecuadorian Ministry of Environment and the UTPL. The code for the Agreement is MAE-DNB-CM-2015-0016-M-0002. The research was funded by Bears in Mind, International Association for Bear Research and Management, the Faculty of Environmental Sciences of Czech University of Life Sciences in Prague, National Geographic Society, Nature and Culture International, GIZ Ecuador, and Trailcampro.
DOI: 10.15468/dl.9ttqqk
title: Occurrence Download

description: A dataset containing 6118 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Gyrinophilus porphyriticus (Green, 1827))"
 ]
}

 The dataset includes 6118 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074476-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13344326
title: benmarhnia-lab / cal_trend_disparity: dataset

description: "Countylist_50yearp5w_192_clean.csv" includes the list of counties included in the study and whether they had any intense wildfire day (>35 mug/m^3) between 2006 and 2019.

"mock_data" folder includes zcta-specific daily time series data of PM2.5 concentration, temperature, dew point temperature and group-specfici population size (sex, age, and race), with simulated circulatory and respiratory acute care utlization counts. Note the race is a combination of race and ethnicity and all race groups excluded individuals identified as Hispanic.
DOI: 10.5281/zenodo.13344327
title: benmarhnia-lab / cal_trend_disparity: dataset

description: "Countylist_50yearp5w_192_clean.csv" includes the list of counties included in the study and whether they had any intense wildfire day (>35 mug/m^3) between 2006 and 2019.

"mock_data" folder includes zcta-specific daily time series data of PM2.5 concentration, temperature, dew point temperature and group-specfici population size (sex, age, and race), with simulated circulatory and respiratory acute care utlization counts. Note the race is a combination of race and ethnicity and all race groups excluded individuals identified as Hispanic.
DOI: 10.15468/dl.86k494
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Burkina Faso",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lannea microcarpa Engl. & K.Krause"
 ]
}

 The dataset includes 289 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074477-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttgm72
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.242111 -35.717719, 147.242111 -35.719965, 147.246602 -35.719965, 147.246602 -35.717719, 147.242111 -35.717719))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074478-240626123714530/datasets/export for details.
DOI: 10.15468/dl.bfrjkb
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Epidendrum muricatoides Hágsater & Dodson"
 ]
}

 The dataset includes 17 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074479-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7284/159249
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HLY2302 using a Hawaii UHDAS instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/159251
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HLY2302 using a SeaBird SBE-911+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/159275
title: GNSS (Global Navigation Satellite System) data collected during research cruise HLY2302 using a Trimble ABX-Two instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/159276
title: GNSS (Global Navigation Satellite System) data collected during research cruise HLY2302 using a Trimble ABX-Two instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/159277
title: Gravimeter data collected during research cruise HLY2302 using a Bell BGM-3 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/159252
title: Gyrocompass data collected during research cruise HLY2302 using a Sperry MK-27F instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.15468/dl.xehgsg
title: Occurrence Download

description: A dataset containing 355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Epidendrum melinanthum Schltr."
 ]
}

 The dataset includes 355 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074480-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7284/159282
title: INS (Inertial Navigation System) data collected during research cruise HLY2302 using a Applanix POS/MV-320 V5 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/159283
title: INS (Inertial Navigation System) data collected during research cruise HLY2302 using a Kongsberg Seapath 330+ instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/159255
title: Meteorological Station data collected during research cruise HLY2302 using a SIO MET-System instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/159256
title: Multibeam Echosounder data collected during research cruise HLY2302 using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/159257
title: Multibeam Echosounder data collected during research cruise HLY2302 using a Kongsberg EM122 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/159250
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise HLY2302 using a LDEO pCO2 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/159258
title: Singlebeam Echosounder data collected during research cruise HLY2302 using a Knudsen 3260 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/159284
title: Speedlog data collected during research cruise HLY2302 using a Sperry SRD-500 instrument system onboard the platform USCGC Healy

description: Original (unprocessed) data collected during a Field_expedition