cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4231/q444-er62
title: Comparison of mass spectrometry and Fourier transform infrared spectroscopy of plasma samples in identification of patients with fracture-related infections

description: &lt;p style="margin-bottom:11px"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="line-height:115%"&gt;&lt;span aptos="" style="font-family:"&gt;This dataset contains raw data on protein abundances obtained through mass spectrometry (MS) and absorbance spectra from Fourier transform infrared (FTIR) spectroscopy of dried film plasma samples. Samples were collected from patients who developed fracture-related infections following surgical repair with implants and from matched patients who did not experience postoperative infection. Patients were paired based on age, gender, and body mass index to create a balanced cohort. The purpose of this publication is to provide open access to the de-identified raw data that underlines the results reported in our related study published in &lt;i&gt;PLOS ONE&lt;/i&gt;.&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="margin-bottom:11px"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="line-height:115%"&gt;&lt;span aptos="" style="font-family:"&gt;The raw data is provided in an excel sheet for the MS data (&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;abundance ratios of each of the 1058 protein components identified). Sample IDs for each sample are C (control)/ FRI (fracture-related infection)_numerical ID (XXXX). The patients were matched in pairs based on age, gender and body mass index as much as possible listing them as pairs by assigning each pair a number from 1-13 for FRI and Controls.The raw spectra obtained from FTIR spectroscopy are provided as individual spectra files in the folder titled &quot;FTIR raw data&quot;. Each file is identified based on the sample ID: C(control)/FRI (fracture-related infection)_ID that matches the sample ID in the spreadsheet (numerical value XXXX)_well location on the microplate (A-H and 1-12 based ID). Each sample has three replicates that are distinguishable base on the well location on the ID. Each matlab file for the spectra has &lt;span class="notice-text"&gt;the following data AB (absorption), ScRf (control spectra), and ScSm (sample spectra). Within each of these, the first column is absorption and the second column is wave number.&lt;/span&gt;&lt;/p&gt;
description: Raw dataset for MS-based proteomics versus FTIR spectroscopy of 13 paired samples from people with fracture-related infection and controls.
DOI: 10.4231/vkha-df57
title: Tombos Pre-adult Data

description: &lt;p&gt;&lt;span style="font-size:20pt"&gt;&lt;span aptos="" display="" style="font-family:"&gt;&lt;span style="color:#0f4761"&gt;&lt;span style="font-weight:normal"&gt;&lt;span style="font-size:12.0pt"&gt;&lt;span arial="" style="font-family:"&gt;In many archaeological sites in the Nile Valley of Northeast Africa, pre-adult burials are severely underrepresented due to differential burial practices, variable preservation, differential excavation, and curation practices. This study examines pre-adult burials from the New Kingdom-Early Napatan (1400-750 BCE) site of Tombos in Sudan. Historical and artistic documentation of social age categories from Egypt are presented in order to provide a better understanding of social factors for each age group. Skeletal and mortuary data from pre-adult individuals at Tombos are analyzed and compared with data from other sites in the Nile Valley as well as adult burials from Tombos. The analysis of mortuary patterns indicates greater variability in treatment of pre-adults compared to adults and show consistency with documented Egyptological ideas that the youngest members of the community were treated as fully human in death with proper burial and offerings for the afterlife. Pathological condition frequencies (CO= cribra orbitalia, LEH = linear enamel hypoplasia) by age group reveal individuals in the late childhood social age category (8-14 years) experienced higher levels of non-specific stress indicators as they headed towards social adulthood. Examination of mortuary practices and health conditions by social age category sheds light on differing experiences across the life course. &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
description: Burial information, health, and age data for pre-adult individuals from Tombos
DOI: 10.57830/2316458
title: Using Dragonfly Mercury Data to Help Protect Parks: Key findings from a national mercury biomonitoring program

description: This science brief summarizes key research findings from Dragonfly Mercury Project publications. Four-page Portable Document Format (PDF). File size: 818 KB.
DOI: 10.4231/qe7t-7w50
title: Data For: Introduction histories and climatic distribution patterns of congeneric invasive anurans

description: &lt;p&gt;The goal of this study was to compare invasion histories and patterns of niche expansion in 5 congeneric anuran species. We matched public occurrence data through GBIF with climate data from WorldClim to compare the realized niche of our 5 focal species. Ultimately, we observed inconsistent patterns of niche shifts between native and invasive ranges for our species. Data includes: CSV datafiles of occurrence datapoints with their manually curated occurrence status (Native, Uncertain, Likely Established) for all 5 species of Eleutherodactylus. R code (R version 4.4.1) for historic reconstruction, historic climate variable extraction and ecospat analysis of historic climate data. R code for ecological niche modelling of future climate conditions&lt;/p&gt;
description: For this study, we used GBIF data to characterize the invasion history and niche expansion among 5 congeneric invasive anurans that currently pose ecological and economic risks
DOI: 10.4231/6j1b-ar57
title: Data for: Collective emission and selective radiance in atomic clouds and arrays coupled to a microring resonator

description: &lt;p&gt;This data is for a paper where we theoretically investigated the collective dipole-dipole interactions in atoms coupled to a nanophotonic microring resonator. The atoms can interact with each other through light-induced dipole-dipole interactions mediated by free space and through the resonator whispering-gallery modes. The differing characteristics and mismatched wavenumbers of these modes give rise to complex dynamics and provide new opportunities for controlling light&ndash;matter interactions. We explored these phenomena in the context of an experimentally realized atom cloud and study the potential of the proposed sub-wavelength atom arrays.&lt;/p&gt;
description: Data used in the figures of D. Suresh et al, "Collective emission and selective radiance in atomic clouds and arrays ..." Phys. Rev. A 112, 043717 (2025) with short information in FILE_INFO.txt. Also contains .eps files and gnuplot routines.
DOI: 10.15468/dl.g83rhs
title: Occurrence Download

description: A dataset containing 2790837 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation)",
 "Continent is Europe",
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anas platyrhynchos",
 "Year 1990-2025"
 ]
}

 The dataset includes 2790837 records from 1022 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059538-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4231/c462-ws51
title: Data for: STIRAP simulations from the 1S to the 2S states for Hydrogen/Antihydrogen atoms

description: &lt;p&gt;This data is for a paper where we address the issue of achieving a high population of antihydrogen/hydrogen atoms in the 2S level which is essential for spectroscopy measurements testing similarities between matter and antimatter. We proposed and examined the efficiency of applying the STIRAP (Stimulated Raman Adiabatic Passage) process in achieving high population transfer from the 1S to the 2S levels. We utilized a circularly polarized Lyman alpha, Ly-&alpha;, pulse to couple the 1S state to the 2P state and a microwave pulse to couple the 2P state and the 2S state. We calculated the efficiency of the STIRAP process for transferring the population between the stretched states (1Sd, 2Sd) as a function of experimental parameters such as Rabi frequencies and pulse durations. We found that a Ly-&alpha; pulse with an energy of a few nanojoules could produce nearly perfect transfer at zero detunings for atoms on the laser beam axis. We extended the analysis to a thermal ensemble of atoms, where Doppler detuning affects the velocity distribution of the hydrogen atoms produced in the 2S level. We found that the width of such velocity distribution is controlled by the Rabi frequency. We showed that the peak velocity of the hydrogen atoms in the 2S level after STIRAP can be controlled by the Ly-&alpha; pulse detuning. The efficiency of STIRAP in transferring population increases at low temperature (T&sim;1 mK). Finally, we showed that a background magnetic field improves the transfer rates between the other trappable states (1Sc, 2Sc).&lt;/p&gt;
description: Figure data for [AbdAlGhaffar K. Amer, et al., “Simulation of stimulated Raman adiabatic passage from the 1S to the 2S states of the hydrogen and antihydrogen atoms,” Phys. Rev. A 112, 043111 (2025)]. Also FILE_INFO.txt, .eps files, gnuplot routines.
DOI: 10.4231/6zq8-j219
title: Data For Experimental Characterization of Thermal Grease Degradation Between Warped Mating Surfaces in Power-Cycled Assemblies

description: &lt;p&gt;Thermal interface materials (TIMs) are crucial for effective heat transfer within electronic packages. Although TIMs enhance heat transfer at the beginning of life, they often degrade over time because of thermo-mechanical stresses in the system. Past studies generally evaluated the reliability of TIMs applied between two flat, parallel surfaces. But in practice, components within the package have inherent warpage and heat sinks are not perfectly flat. But the impact of this non-flatness on the degradation of TIMs is not well understood. Thus, this study leverages a customized experimental tool to observe the impact of non-flatness on the degradation of thermal greases with power cycling. The grease is inserted between a metal heater and an air-cooled (transparent) lens (that mimics the heat sink). The curvatures of both the die and the lens are precisely controlled (flat, convex, or concave). Power cycling causes voids, cracks, and movement of the TIM and this structural evolution is recorded with a digital microscope through the transparent lens. The non-flat mating surfaces lead to non-uniformity and motion of the thermal grease. Generally, curvatures that ensure the bondline is thickest at the center of the heater generally reduce the degradation as the decreasing bondline thickness from the center to edge prevents the grease from flowing outward. In contrast, significant degradation is observed when the center has the thinnest local BLT and the highest local pressures. Ultimately, these results demonstrate that controlling surface flatness or warpage is critical to controlling the degradation of thermal greases.&lt;/p&gt;
description: The dataset presents information about the characterization of thermal grease under non-flat mating surfaces in power cycling environment. The folder contains videos with degradation data for 5-day cycle period for all 9 combinations of mating surfaces.
DOI: 10.15468/dl.qn9ypa
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Protapes ziczac, Tapes inflata, Venus ziczac)",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059583-251120083545085/datasets/export for details.
DOI: 10.4231/8yqz-4g50
title: Somalia Education Evaluation Reports

description: &lt;p&gt;This set of publications describe the external evaluation of an accelerated basic education (ABE) program in Somalia. The reports synthesize findings from a two-year external longitudinal evaluation study of the Bar ama Baro project in Somalia that examined (1) BAB effectiveness, (2) learning outcomes of diverse students in BAB Levels 1 and 2 and formal primary education in grades 1 -3, and (3) lessons learned for sustainability and scalability. The data derives from focus group discussions (74), key Informant interviews (127), student surveys and learning assessments (939), teacher surveys (49), and exit surveys with parents and caregivers of non-retained students (665) and non-retained teachers (15). The Baseline report describes evaluation framework and methodology and student and teacher data at baseline. The midline report examines student academic and SEL growth after one year, and presents findings from key informant interviews and exit surveys with parents of non-retained students. The final report examines findings and lessons learned from participants completing two years of either ABE or formal primary school, levers and barriers to student success, and implications for future educational programming and policy. Learning from this work will inform evidence-based decision making in Somalia and elsewhere. &lt;/p&gt;
description: Baseline, midline, and endline external evaluation reports from a 2-year education implementation in Somalia.
DOI: 10.4231/yv5g-3g44
title: Data for paper - Autofluorescence-Based Detection of Antibiotic Resistance by Spectral Flow Cytometry

description: &lt;p style="text-align:justify; margin-bottom:8px"&gt;Flow cytometry in microbiology faces challenges such as limited bacterial-specific stains, high fluorophore costs, poor stain permeability, and difficulty distinguishing small bacterial cells from debris. Staining also requires multiple wash steps that lower sensitivity and add complexity. Autofluorescence detection, linked to metabolic cofactors like FAD and NADH, offers a stain-free, cost-effective alternative. We present a method to distinguish antibiotic-resistant from non-resistant bacteria using autofluorescence spectral signatures captured with a spectral flow cytometer (seven lasers, 54 detectors, and an integrated biosafety cabinet). Gentamicin-stressed &lt;em data-end="787" data-start="778"&gt;E. coli&lt;/em&gt; and &lt;em data-end="804" data-start="792"&gt;Salmonella&lt;/em&gt; showed increased autofluorescence at UV, violet, and blue wavelengths compared with controls. Similarly, oxacillin-stressed MSSA exhibited elevated autofluorescence within 4&ndash;6 hours, while MRSA showed no significant change. These results demonstrate that antibiotic resistance can be rapidly and quantitatively detected through resistance-specific autofluorescence, offering a promising stain-free diagnostic tool.&lt;/p&gt;
description: Autofluorescence spectral flow cytometry enables rapid, stain-free differentiation of antibiotic-resistant and non-resistant bacteria based on metabolic fluorescence changes, offering a cost-effective and safe approach for clinical pathogen detection.
DOI: 10.15468/dl.pwkbqr
title: Occurrence Download

description: A dataset containing 21800 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia decurrens",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 21800 records from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059582-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4231/m849-7391
title: Data set for Electronic phase-locking for three-color, two-pathway coherent control

description: lt;pgt;We report a new method of two-pathway coherent control using three narrow-band cw laser sources, phase locked in an optical phase-lock loop, to maintain the high degree of optical coherence required for the coherent control process. In addition, we derive expressions for two-photon transition amplitudes and demonstrate their dependence on the polarization of the field components. This phase-locking technique expands the set of interactions to which coherent control techniques may be applied. It also allows for a constant low-frequency offset between the optical interactions, producing a continuous and constant phase ramp between the interactions, facilitating phase-sensitive detection of the modulating atomic signal. We illustrate this technique with two-photon vs. one-photon excitation of a amp;Delta;lt;emgt;Flt;/emgt; = 1 component, and alternatively a amp;Delta;lt;emgt;Flt;/emgt; = 0 component, of the 6s lt;supgt;2lt;/supgt;Slt;subgt;1/2lt;/subgt;amp;nbsp;-amp;gt; 7s lt;supgt;2lt;/supgt;Slt;subgt;1/2 lt;/subgt;transition of atomic cesium.lt;/pgt;
description: We report a new method of two-pathway coherent control using three narrow-band cw laser sources, phase locked in an optical phase-lock loop, to maintain the high degree of optical coherence required for the coherent control process.
DOI: 10.4231/jw3d-s693
title: Data for "The line bundle regime and the scale-dependence of continuum dislocation dynamics"

description: &lt;p&gt;Dislocations, line defects in metals which carry plastic deformation, are oriented objects, which poses issues for continuum models of their motion. Local collections of dislocations around a point could have cancellation in their line orientation vectors. In order to assess the degree to which this occurs in practice, the orientation statistics of local collections of dislocations is assessed from simulations of discrete dislocation dynamics. This dataset includes the simulation data and all scripts needed to reproduce the figures present in the publication which it accompanies. Especially, this code obtains contributions of line segments to various local collections in the crystal, the spatial extent of which are specified in the calculations. This code, as a result, is capable of studying the transition from length scale regimes where the orientation statistics are sharply defined (at fine scales) to regimes where the orientation statistics are more broadly distributed (at long scales). &lt;/p&gt;

&lt;p&gt; &lt;/p&gt;

&lt;p&gt;As mentioned, this code reproduces the figures in the accompanying paper. However, some data has been omitted for size considerations, especially those portions which are calculated by intermediate steps in the code:&lt;/p&gt;

&lt;p&gt;1. The raw discrete dislocation dynamics files (used by a_obtainRaytables) are omitted but the resulting segment tables are included&lt;/p&gt;

&lt;p&gt;2. The density tables, where dislocations are assigned to local collections with weights, are also omitted. However, they can all be regenerated using the a_obtainDensityTables script.&lt;/p&gt;

&lt;p&gt;Figure scripts are labeled accordingly.&lt;/p&gt;
description: Dataset used to analyze the orientation statistics of local collections of dislocations as the spatial size of those collections is changed. Contains all data and scripts needed to reproduce the figures in publication with the same title.
DOI: 10.4231/kys4-4c51
title: Evaluating syrphid fly Predation and aphid suppression under controlled and field conditions in high tunnels

description: &lt;p&gt;This study evaluates the role of syrphid flies (&lt;em data-end="232" data-start="210"&gt;Toxomerus marginatus&lt;/em&gt; and &lt;em data-end="258" data-start="237"&gt;Eupeodes americanus&lt;/em&gt;) and green lacewings (&lt;em data-end="301" data-start="281"&gt;Chrysoperla carnea&lt;/em&gt; and &lt;em data-end="321" data-start="306"&gt;C. rufilabris&lt;/em&gt;) as biological control agents of the green peach aphid (&lt;em data-end="394" data-start="378"&gt;Myzus persicae&lt;/em&gt;) in high tunnel vegetable systems. Conducted at Purdue University&rsquo;s Meigs Horticulture Farm (2024&ndash;2025), the project combined laboratory bioassays and seasonal field experiments to assess predator performance under temperature regimes representative of spring and summer conditions. Laboratory assays quantified aphid consumption and survival across cool (15 &deg;C), moderate (23 &deg;C), and warm (30/25 &deg;C day/night) environments. Complementary high-tunnel trials in pepper and spinach crops measured predator-induced aphid mortality, while seasonal observations documented natural syrphid&ndash;aphid dynamics, parasitoid activity, and insect community composition.&lt;/p&gt;

&lt;p&gt;Data for manuscript submission. For additional information or specific data requests, please contact Allison Zablah (&lt;a data-end="289" data-start="270" rel="noopener"&gt;azablahc@purdue.edu or allisonzablah.az@gmail.com&lt;/a&gt;) or Laura L. Ingwell (&lt;a href="mailto:lingwell@purdue.edu"&gt;lingwell@purdue.edu&lt;/a&gt;)&lt;/p&gt;
description: This dataset supports the manuscript “Seasonal evaluation of syrphid flies and lacewings as biological control agents of aphids in protected vegetable systems.” It contains laboratory and high-tunnel data collected during Summer 2024 and Spring 2025
DOI: 10.4231/9fhb-pw23
title: Line Bound States in the Continuum (BIC)s Code

description: &lt;p&gt;Incorporating epitaxially grown active semiconductor media into self-assembled microsphere crystals has remained a major challenge as the curved geometry of the spheres is incompatible with conventional planar growth and patterning techniques. As a result, active photonic devices based on such self-assembled structures, which have other desirable properties such as enabling the rapid assembly of large area systems, have been elusive. Here, we numerically demonstrate an alternative route to creating high-Q resonances in microsphere-based nanophotonic assemblies compatible with standard optical gain materials. We show that close-packed layers of monodisperse microspheres can exhibit symmetry band gaps, regardless of their layer stacking order. Thus, this microsphere environment can be used to create lines of bound states in the continuum (BICs) of an embedded slab made of active material. Using a realistic ZnS@SiO_2 (core-shell) architecture and sphere diameters compatible with scalable colloidal assembly, we predict sharp spectral features in angle-resolved transmission that trace these lines of BICs and persist in the presence of some fabrication disorder. Altogether, in enabling the integration of unpatterned epitaxial gain slabs with large-area colloidal microsphere assemblies, this approach opens a practical path toward active, dynamically reconfigurable photonic devices that leverage BIC physics for narrow-linewidth lasing and enhanced light&ndash;matter interactions.&lt;/p&gt;
description: Python code used to generate the data for the paper "Lines of bound states in the continuum in monodisperse microsphere structures". FDTD and band structure analysis of dielectric spheres stacked with a single fault present.
DOI: 10.4231/7vht-e254
title: Cooperative Long-Range Interactions

description: &lt;p&gt;The work demonstrates that Dicke superradiance extends far beyond the conventional near-field regime, persisting at significantly larger interatomic distances in one- and two-dimensional arrays embedded within dielectric layers.&lt;/p&gt;

&lt;p&gt;Here, we provide the simulation codes and results demonstrating the long-range interaction in thin dielectric media.&lt;/p&gt;
description: In this work, we demonstrate that embedding quantum emitters within a thin
dielectric layer fundamentally alters their collective radiative behavior.