cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21233/hnt8-zd19
title: Puy des Gouttes pollen dataset

description: Raw data for the Puy des Gouttes pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/560p-hc26
title: LDDsite3308 water chemistry dataset

description: Raw data for the LDDsite3308 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.ufxzys
title: Occurrence Download

description: A dataset containing 975406977 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations, Great Backyard Bird Count, VectorBase (Bioinformatics Resource for Invertebrate Vectors of Human Pathogens), USGS GAP - Alaska - Vertebrates - 1867-2009, The New York Botanical Garden Herbarium (NY), Multistate Aquatic Resources Information System - MARIS - Fish, USGS PWRC - Bird Phenology Program, Point Reyes Bird Observatory - Point Counts, NMNH Extant Specimen Records (USNM, US))",
 "GadmGid is USA",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 975406977 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022916-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/pk6r-x524
title: La Grande Fen testate amoebae surface sample dataset

description: Raw data for the La Grande Fen testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/as63-xa30
title: Lake Albert WHOI core 2PC pollen dataset

description: Raw data for the Lake Albert WHOI core 2PC pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/7s34-jr23
title: Gouillé Rion pollen dataset

description: Raw data for the Gouillé Rion pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/111y-b335
title: Yongho-Dong ostracode surface sample dataset

description: Raw data for the Yongho-Dong ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/98h2-qf95
title: Native Lake pollen surface sample dataset

description: Raw data for the Native Lake pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.w2ag84
title: Occurrence Download

description: A dataset containing 1034 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vaccinium ovalifolium Sm.",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1034 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022959-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/w70b-e894
title: Winnemucca [0668] vertebrate fauna dataset

description: Raw data for the Winnemucca [0668] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/far4-j480
title: LDDsite768 ostracode surface sample dataset

description: Raw data for the LDDsite768 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/qr1q-px44
title: Slieveanorra testate amoebae surface sample dataset

description: Raw data for the Slieveanorra testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15149085
title: Microscopy source data for Ma et al. BioRxiv 2024 (https://doi.org/10.1101/2024.12.05.627070) and Nature Communication 2025

description: Source_Data.xls contains the data sources used to generate the figures presented in Ma et al, 2025, except for microscopy images that can be found in Figure 6.zip, Figure 7E.zip, Figure_6A_Raw-images.zip, Figure_7E_Raw-images.zip.

Figure 6.zip contains 16 bits - 3D Tif images for all data shown in Figure 6A. 

Figure_6A_Raw-images.zip contains Z-stacks fluorescent images that were used for quantifications shown in Figure 6A.

Genotypes of strains used in Figure 6A : yAT3880 (WT), yAT3974 (srs2∆), yAT4490 (rad52-Y376A), yAT4491 (rad52-Y376A srs2∆), yAT4500 (rad52-F316A), yAT4501 (rad52-F316A srs2∆), yAT4488 (rad52-F337A), yAT4489 (rad52-F337A srs2∆).

Figure 7E.zip contains 16 bits - 3D Tif images for all data shown in Figure 7E. 

Figure_7E_Raw-images.zip contains Z-stacks fluorescent images that were used for quantifications shown in Figure 7E. 

Genotypes of strains used in Figure 7E : yAT3880 (WT), yAT4709 (rad51-T161R), yAT3974 (srs2∆), yAT4700 (rad51-T161R srs2∆).
DOI: 10.5281/zenodo.15149086
title: Microscopy source data for Ma et al. BioRxiv 2024 (https://doi.org/10.1101/2024.12.05.627070) and Nature Communication 2025

description: Source_Data.xls contains the data sources used to generate the figures presented in Ma et al, 2025, except for microscopy images that can be found in Figure 6.zip, Figure 7E.zip, Figure_6A_Raw-images.zip, Figure_7E_Raw-images.zip.

Figure 6.zip contains 16 bits - 3D Tif images for all data shown in Figure 6A. 

Figure_6A_Raw-images.zip contains Z-stacks fluorescent images that were used for quantifications shown in Figure 6A.

Genotypes of strains used in Figure 6A : yAT3880 (WT), yAT3974 (srs2∆), yAT4490 (rad52-Y376A), yAT4491 (rad52-Y376A srs2∆), yAT4500 (rad52-F316A), yAT4501 (rad52-F316A srs2∆), yAT4488 (rad52-F337A), yAT4489 (rad52-F337A srs2∆).

Figure 7E.zip contains 16 bits - 3D Tif images for all data shown in Figure 7E. 

Figure_7E_Raw-images.zip contains Z-stacks fluorescent images that were used for quantifications shown in Figure 7E. 

Genotypes of strains used in Figure 7E : yAT3880 (WT), yAT4709 (rad51-T161R), yAT3974 (srs2∆), yAT4700 (rad51-T161R srs2∆).
DOI: 10.21233/xjkc-pc83
title: Muskegon Lake diatom surface sample dataset

description: Raw data for the Muskegon Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/j4vr-e143
title: SESS76A pollen surface sample dataset

description: Raw data for the SESS76A pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ca4y-d791
title: Lac Lesage diatom surface sample dataset

description: Raw data for the Lac Lesage diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.pgkadz
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Buchnerodendron speciosum Gürke"
 ]
}

 The dataset includes 123 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022960-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/g101-s136
title: Crane vertebrate fauna dataset

description: Raw data for the Crane vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/qkhh-4z06
title: TK-25 diatom surface sample dataset

description: Raw data for the TK-25 diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/4jp7-3631
title: LDDsite3508 ostracode surface sample dataset

description: Raw data for the LDDsite3508 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/qhtr-fk23
title: Ridge and Slough (02-05-20-14) pollen dataset

description: Raw data for the Ridge and Slough (02-05-20-14) pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.zkxyzk
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oplopanax japonicus (Nakai) Nakai",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 61 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022961-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m8ztse
title: Occurrence Download

description: A dataset containing 6420 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Georgia, Azerbaijan, Armenia)",
 "Geometry POLYGON((40.00505 43.40766,40.23835 43.32069,40.32258 43.14019,40.56325 43.11612,40.85205 43.10409,41.14084 42.75513,41.42964 42.77919,41.55788 42.53046,41.77779 41.90617,41.51134 41.51914,41.59453 41.44077,41.86004 41.47366,42.31487 41.48882,42.80402 41.578,43.19653 41.28372,43.54286 41.12738,43.68139 40.65613,43.5235 40.48409,43.63865 40.41116,43.58875 40.33056,43.63865 40.2346,43.71542 40.16935,43.63865 40.154,43.64633 40.11561,43.8037 40.06572,43.94955 40.01198,44.26813 40.04653,44.32047 40.01527,44.46388 39.98511,44.60206 39.81623,44.69404 39.78995,44.71221 39.76087,44.73947 39.72997,44.81399 39.61547,44.89032 39.59003,44.86809 39.74343,44.93779 39.44362,45.06662 39.3683,45.06662 39.3683,45.08138 39.34998,45.10635 39.325,45.16253 39.21263,45.26867 39.22512,45.33734 39.18766,45.40601 39.10026,45.43568 38.99496,45.60579 38.96915,45.68761 38.95054,45.90545 38.88175,46.06205 38.87723,46.17726 38.84319,46.34222 38.91127,46.78838 39.20043,47.37597 39.50334,48.00801 39.70039,48.3611 39.38014,48.19861 39.32175,48.0737 39.22413,48.34468 39.02706,48.00801 38.9121,48.12026 38.7436,48.23793 38.77251,48.33646 38.60007,48.41858 38.60007,48.55817 38.46869,48.66492 38.37836,48.83736 38.46869,48.8702 38.46048,48.82914 38.88747,48.89483 38.96958,48.95231 39.08454,49.00158 39.2734,49.04264 39.1995,49.14117 39.21592,49.24792 39.25697,49.3054 39.60185,49.41215 39.72502,49.41215 39.92209,49.44499 40.09453,49.48605 40.19307,49.89662 40.34908,50.21686 40.34908,50.41393 40.32445,50.07727 40.60363,49.76553 40.55316,49.52711 40.64469,49.49132 40.87976,48.59034 41.82074,48.3367 41.56384,48.03587 41.45554,47.91554 41.32317,47.78317 41.19081,47.51844 41.27504,47.28868 41.29588,46.85422 41.81791,46.50765 41.8767,46.30309 41.9489,46.21886 42.04517,45.83379 42.0933,45.59313 42.2016,45.73753 42.346,45.78566 42.49039,45.53296 42.58666,45.35247 42.51446,45.184 42.71903,45.02757 42.70699,44.91927 42.79122,44.823 42.65886,44.55827 42.79122,44.23338 42.71903,43.99271 42.53853,43.74002 42.62276,43.78815 42.76716,43.58358 42.86342,42.80785 43.1654,42.44767 43.26384,41.9763 43.19823,41.46574 43.36882,41.08068 43.39289,40.87611 43.48915,40.68132 43.5434,40.35038 43.5851,40.07699 43.56425,40.00505 43.40766))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bucerotiformes",
 "Year 2005-2025"
 ]
}

 The dataset includes 6420 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022962-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/hzge-6h36
title: Prospect Hill II pollen dataset

description: Raw data for the Prospect Hill II pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/bzjm-f845
title: 8503 pollen surface sample dataset

description: Raw data for the 8503 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/em6r-wb36
title: Foster Reservoir diatom surface sample dataset

description: Raw data for the Foster Reservoir diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/10xh-n295
title: Utkiavik [Utqiagvik] [AKBAR002] vertebrate fauna dataset

description: Raw data for the Utkiavik [Utqiagvik] [AKBAR002] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/3m84-e233
title: LDDsite2898 ostracode surface sample dataset

description: Raw data for the LDDsite2898 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.wpp4zk
title: Occurrence Download

description: A dataset containing 384 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Artemisia anethifolia Weber ex Stechm."
 ]
}

 The dataset includes 384 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022964-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/xx89-vt31
title: Attawapiskat River 2 testate amoebae surface sample dataset

description: Raw data for the Attawapiskat River 2 testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/h49z-qh26
title: Cheng Site 98X pollen surface sample dataset

description: Raw data for the Cheng Site 98X pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/zq08-2225
title: Pashley Pit vertebrate fauna dataset

description: Raw data for the Pashley Pit vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.24k7jz
title: Occurrence Download

description: A dataset containing 1628 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydrangea paniculata Siebold",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1628 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022965-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/przk-vr95
title: Snowville vertebrate fauna dataset

description: Raw data for the Snowville vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.28574525
title: Klebsiella spp. assemblies to test with plasmidEC and mlplasmids

description: These assemblies were used to test mplasmids and plasmidEC predictions.
DOI: 10.15468/dl.dr32kg
title: Occurrence Download

description: A dataset listing the 9 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "TaxonKey is Lactarius Pers., 1797"
 ]
}

 The dataset's 9 records were derived from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022958-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/k1s1-5r54
title: Stump Lake water chemistry dataset

description: Raw data for the Stump Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/xwgc-ss93
title: LDDsite3493 ostracode surface sample dataset

description: Raw data for the LDDsite3493 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/a8jq-7f35
title: Lake Tulane charcoal dataset

description: Raw data for the Lake Tulane charcoal dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.14278/rodare.3730
title: Data publication for manuscript: Variability of effective diffusivity in fractured and mineralized metamorphic host rock at Bukov, Bohemian Massif (CZ)

description: Dataset containing research data, Python scripts, and COMSOL models associated with the publication: Variability of effective diffusivity in fractured and mineralized metamorphic host rock at Bukov, Bohemian Massif (CZ) and submitted to Applied Geochemistry.
DOI: 10.14278/rodare.3729
title: Data publication for manuscript: Variability of effective diffusivity in fractured and mineralized metamorphic host rock at Bukov, Bohemian Massif (CZ)

description: Dataset containing research data, Python scripts, and COMSOL models associated with the publication: Variability of effective diffusivity in fractured and mineralized metamorphic host rock at Bukov, Bohemian Massif (CZ) and submitted to Applied Geochemistry.
DOI: 10.21233/626e-7k44
title: Hual Cu Cuish Meadow pollen dataset

description: Raw data for the Hual Cu Cuish Meadow pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.