cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0114049.10fu
title: SH0114049.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive122376.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive122377.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0114050.10fu
title: SH0114050.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive122377.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive122378.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0114051.10fu
title: SH0114051.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive122378.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive122379.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0114052.10fu
title: SH0114052.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.vrh8zf
title: Occurrence Download

description: A dataset containing 535727 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Cameroon"
 ]
}

 The dataset includes 535727 records from 545 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025866-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cte7g8
title: Occurrence Download

description: A dataset containing 279 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aniba perutilis Hemsl."
 ]
}

 The dataset includes 279 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205767-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zdgxzv
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-109.94019 25.74053,-106.51245 22.67485,-105.30396 22.35008,-104.95239 23.20096,-105.39185 24.06653,-107.98462 27.13737,-109.94019 25.74053))",
 "TaxonKey is Sceloporus horridus Wiegmann, 1834",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025866-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qn6bao
title: Occurrence Download

description: A dataset containing 30594 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Drosera intermedia Hayne"
 ]
}

 The dataset includes 30594 records from 255 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025868-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jp5ksh
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thespesia cubensis (Britton & P.Wilson) J.B.Hutch."
 ]
}

 The dataset includes 44 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0202525-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jufy6p
title: Occurrence Download

description: A dataset containing 1048 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Drosera obovata Mert. & Koch"
 ]
}

 The dataset includes 1048 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025869-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tq8pxs
title: Occurrence Download

description: A dataset containing 5423 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Marine Turtle Nesting Locations, Queensland and Northern Territory coastlines, Australia 1915-2012"
 ]
}

 The dataset includes 5423 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0211724-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yodqv5
title: Occurrence Download

description: A dataset containing 249063 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Year 2000-2010",
 "Geometry POLYGON((-79.07229 10.44088,-81.82365 -5.33954,-77.27217 -7.41337,-70.34649 1.5374,-69.27326 6.9219,-70.90679 8.53157,-74.2355 10.38666,-79.07229 10.44088))",
 "HasCoordinate is true",
 "TaxonKey is Aves",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 249063 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025870-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkb349
title: Occurrence Download

description: A dataset containing 2345 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-75.52697 4.66275,-75.52405 4.69502,-75.56525 4.70927,-75.57092 4.69914,-75.57864 4.67151,-75.56817 4.66601,-75.55667 4.66447,-75.52646 4.65674,-75.52697 4.66275))",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 2345 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0211720-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7epdvd
title: Occurrence Download

description: A dataset containing 325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Juniperus semiglobosa Regel",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 325 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025870-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.245dhu
title: Occurrence Download

description: A dataset containing 278 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Idaea macilentaria (Herrich-Schäffer, 1846)"
 ]
}

 The dataset includes 278 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0202514-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxffg6
title: Occurrence Download

description: A dataset containing 15224 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parthenium hysterophorus L."
 ]
}

 The dataset includes 15224 records from 312 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032386-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxh148
title: Occurrence Download

description: A dataset containing 192120 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The molluscs collection (IM) of the Muséum national d'Histoire naturelle (MNHN - Paris)"
 ]
}

 The dataset includes 192120 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025872-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.926wwy
title: Occurrence Download

description: A dataset containing 391138 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Frangula Mill."
 ]
}

 The dataset includes 391138 records from 1087 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032388-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6qhvus
title: Occurrence Download

description: A dataset containing 5615 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hexagrammos decagrammus (Pallas, 1810)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 5615 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041136-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rzuzrs
title: Occurrence Download

description: A dataset containing 498881 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ixodida"
 ]
}

 The dataset includes 498881 records from 660 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041114-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zajnw
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hexagrammos stelleri Tilesius, 1810",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 240 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041138-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5u8wdv
title: Occurrence Download

description: A dataset containing 283 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hexanchus griseus (Bonnaterre, 1788)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 283 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041139-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqrh52
title: Occurrence Download

description: A dataset containing 3541 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Benin",
 "OccurrenceStatus is Present",
 "TaxonKey is Parkia biglobosa (Jacq.) R.Br. ex G.Don",
 "Year 1984-2024"
 ]
}

 The dataset includes 3541 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041140-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14444506
title: Dataset of manuscript "No saturation of soil carbon under long-term extreme manure additions"
DOI: 10.5281/zenodo.14444507
title: Dataset of manuscript "No saturation of soil carbon under long-term extreme manure additions"
DOI: 10.15468/dl.bz3fw7
title: Occurrence Download

description: A dataset containing 570 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hippocampus erectus Perry, 1810",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 570 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041142-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.4924439.v3
title: II.8 - Agrogenom synthesis of genome evolution scenarios

description: Finalisation of the reconciliation procedure by recomputing the block events based on the final event set and summarizing of ancestral states and events from each gene (sub)family into a pangenome-wide synthesis of species evolutionary history.<br>The event block reports are analogous to the output of step #II.5; the previous and final block set are mostly overlapping, and block_ids of identical blocks are preserved across these sets.<br>The genome history synthesis is generated by ancestral_content.py script ; note it could be done within the same run as as ancestral content reconstruction (previous step #II.7). The output notably includes:- <i>synthesis/</i> folder: - <i>genome_synthesis.*</i> files: species tree annotated with the sum of events (duplication, transfer, origination, loss, replacement) and of gene counts over all families, in extended Newick format (with bracketed comments at nodes) and as a serialized Python object (pickle) - <i>genome_*_synthesis.nhx</i> files: idem but separating annotation of gene count (states) and event count - <i>phylogenetic_profiles/</i> folder: tables of state count per gene family or orthologous subfamily, and by species tree node (any or extant nodes = "leaf" only)<br> - <i>annottables/</i> folder: tables of orthologous gene subfamilies specifically gained/lost at a species tree node, or specifically present/absent in a clade, with the list of corresponding genes in extant genomes, their coordinates and their functional annotation.<br>- <i>ortho_subfam_*.tab</i> files: tables of orthologous subfamilies assignation of gene sequence identifiers or of unique event identifiers, respectively.<br> - <i>specific_gene_dump.tab</i> file: relational database table dump listing the specific gene sets (see <i>annottables/</i> folder)<br> - <i>phylogenetic_profile_dump.tab</i> file: relational database table dump listing presence/absence states of (sub)families at each species tree node (see  - <i>phylogenetic_profiles/</i> folder<i>)<br></i>- <i>reconciliation_collection/</i> folder: updated and final set of reconciled gene trees in phyloXML and serialized Python object (pickle) formats.<br><br>
DOI: 10.15468/dl.w3shcs
title: Occurrence Download

description: A dataset containing 1116 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vigna membranacea A.Rich."
 ]
}

 The dataset includes 1116 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041143-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ck34m
title: Occurrence Download

description: A dataset containing 1113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hippocampus hippocampus (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1113 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041144-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14523962
title: Data supporting 'Brief Communication: Sensitivity of Antarctic ice-shelf melting to ocean warming across basal melt models'

description: Data and code supporting the publication 'Brief Communication: Sensitivity of Antarctic ice-shelf melting to ocean warming across basal melt models'
DOI: 10.5281/zenodo.14523963
title: Data supporting 'Brief Communication: Sensitivity of Antarctic ice-shelf melting to ocean warming across basal melt models'

description: Data and code supporting the publication 'Brief Communication: Sensitivity of Antarctic ice-shelf melting to ocean warming across basal melt models'
DOI: 10.15468/dl.4sfu23
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hippocampus reidi Ginsburg, 1933",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 132 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041145-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26165/juelich-data/hcko0b
title: Impulse propagation through a small standing crowd

description: The experiments were performed to observe the pushing propagation between people in a crowd.
DOI: 10.15468/dl.8zttm6
title: Occurrence Download

description: A dataset containing 463720 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-5.87583 50.12027,13.68921 50.12027,13.68921 61.25158,-5.87583 61.25158,-5.87583 50.12027))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is CR",
 "TaxonKey is Anguilla anguilla (Linnaeus, 1758)",
 "Year 2000-2024"
 ]
}

 The dataset includes 463720 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041137-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26165/juelich-data/d8n7ee
title: Bottleneck and social groups

description: The experiments were performed to observe the influence that social groups have on evacuation time.
DOI: 10.26165/juelich-data/pxyjhq
title: Propagation of information in waiting crowds

description: This experiment was performed to observe the social interaction between members of a crowd.
DOI: 10.26165/juelich-data/coluyr
title: Single-file motion of pupils

description: The experiments were performed to observe the stepping locomotion of pedestrians at different densities.
DOI: 10.26165/juelich-data/pc9sx6
title: Bottleneck and social groups

description: The experiments were performed to observe the influence that social groups have on evacuation time.