cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/chmgmkrxwk.1
title: Comprehensive dataset on fluoride removal from aqueous solution by enhanced electrocoagulation process by persulfate salts

description: The data available for the fluoride removal unit was obtained from the laboratory scale electrocoagulation process.
DOI: 10.17632/s3hnjdrvwk.1
title: Database on arthropod capture attempts and floral visits by hummingbirds

description: This database shows the number of arthropod capture attempts and flower visits by the members of a hummingbird ensemble that lives in a seasonal ecosystem of West Mexico (Nevado de Colima volcano) at 4260 m a. s. l. Foraging data were collected during the warm-dry (May 2016), rainy (September 2016), and cold-dry (February 2017) seasons using the ad libitum sampling method (54 hours/season). Data presented are 1) hummingbird species, 2) sex, 3) number of arthropod capture attempts, 4) number of floral visits, 5) total time of observation, and 6) the time of day when the observation was made.
DOI: 10.17632/ytvttnr2nn.1
title: Code for SPS calculations

description: Codes to calculate spatial proximity scores (SPSs) between multiplexed cell units (MCUs), used in the paper "Cellular state landscape and herpes simplex virus type 1 infection progression are connected" by Pietilä et al., 2023.
DOI: 10.17632/344b25fk2f.1
title: PI3K inhibitor – Western blot images

description: Data in the paper "Cellular state landscape and herpes simplex virus type 1 infection progression are connected" by Pietilä et al., 2023:
- Images of Western blots (Supplementary Figure 13)
- Fold changes quantified from Western blots (Figure 6b)

Three independent experiments were performed to analyse how a PI3K inhibitor (LY294002) affects HSV-1-induced Akt phosphorylation in HeLa cells. DMSO treatment was used as a control. Band intensities of HSV-1 ICP5, ICP8, and ICP27 as well as of p-Akt (Thr308), p-Akt (Ser473), and beta-actin were quantified, and results are shown in Figure 5f of the paper. A summary of the Western blots is shown in Figure S8e of the paper.
DOI: 10.17632/gxv9t4krxg.1
title: p-Akt and PI3K inhibitor – singe-cell feature values

description: Data in the paper "Cellular state landscape and herpes simplex virus type 1 infection progression are connected" by Pietilä et al., 2023:
- Single-cell mean intensities of p-Akt (Ser473), p-Akt (Thr308), 4E-BP, cleaved caspase 3, and ICP27 in HeLa and A549 cells and summaries of  apoptotic HeLa cells
- A549_pAkt_Ser473_validation.csv (Supplementary Figure 12a)
- HeLa_pAkt_Ser473_validation.csv (Supplementary Figure 8a)
- HeLa_pAkt_Thr308_two_replicates.csv (Supplementary Figure 8b)
- HeLa_PI3KInhibitor_4EBP_secondReplicate.csv (Supplementary Figure 13b)
- HeLa_PI3KInhibitor_4EBP.csv (Figure 6c)
- HeLa_PI3KInhibitor_cleaved_caspase3_ICP27_secondReplicate.csv (Supplementary Figure 13d)
- HeLa_PI3KInhibitor_cleaved_caspase3_ICP27.csv (Figure 6e)
- HeLa_PI3KInhibitor_percentage_apoptotic_cells_secondReplicate.csv (Supplementary Figure 13c)
- HeLa_PI3KInhibitor_percentage_apoptotic_cells.csv (Figure 6d)

HeLa or A549 cells were mock- or HSV-1-infected (indicated by "condition") and either untreated or treated with a PI3K inhibitor (LY294002) or DMSO (indicated by "treatment"). After fixation, the markers were detected by immunofluorescence imaging. Cells from HSV-1-infected wells were classified into uninfected cells without infected neighbors, uninfected cells with infected neighbors, and infected cells (indicated by “classification_infection”) as described in the paper. Single-cell intensities are provided as background-subtracted mean intensity values for the whole-cell. Data cleanup, background subtraction of the intensity values, and classification of cells were applied as described in the paper. Experimental conditions are in duplicate or triplicate (indicated by “well_name”).
DOI: 10.17632/mg73d32md4.1
title: P bodies in HeLa, A549 and BJ cells – single-cell feature values

description: Data in the paper "Cellular state landscape and herpes simplex virus type 1 infection progression are connected" by Pietilä et al., 2023:
- Single-cell DDX6 mean intensity, processing body (PB) count and PB sum and mean area in HeLa and A549 cells
- A549_pBodies_two_replicates.csv (Figure 7g and Supplementary 14c)
- HeLa_pBodies_second_replicate.csv (Supplementary Figure 14a,b)

Cells were infected with HSV-1, and after fixation markers were detected by immunofluorescence imaging. P bodies were segmented, counted, and their mean area per cell was quantified. Cells were classified into uninfected and infected cells as described in the paper. Data cleanup and normalisation were applied as described in the paper. HeLa data are from one experiment. A549 data are from two independent experiments. Experimental conditions are in duplicate or triplicate (indicated by “well_name”).
DOI: 10.17632/jprfpjf6ns.1
title: RNA Polymerase II - single-cell feature values

description: Data in the paper "Cellular state landscape and herpes simplex virus type 1 infection progression are connected" by Pietilä et al., 2023:
- Single-cell nuclear mean intensity of RNAP II S5P and S2P in HeLa, A549 and BJ cells (Supplementary Figure 15a-f)

Cells were infected with HSV-1, and after fixation markers were detected by immunofluorescence imaging. Cells from HSV-1-infected wells were classified into uninfected and infected cells (indicated by “classification_infection”) as described in the paper. Single-cell features are provided as normalised background-subtracted mean intensity values for the nucleus. Data cleanup, background subtraction and normalisation of the intensity values were applied as described in the paper. Experimental conditions are in triplicate (indicated by “well_name”).
DOI: 10.17632/sdt339677d.1
title: smFISH of UL19, UL29, EEA1, ERBBB2, RELA and HPRT-1 – single-cell feature values

description: Data in the paper "Cellular state landscape and herpes simplex virus type 1 infection progression are connected" by Pietilä et al., 2023:
- HSV-1 transcript counts: HeLa_UL19_spotCounts_MOIs.csv (Figure 1c right UL19, Supplementary Figure 1b) and HeLa_UL29_spotCounts_MOIs.csv (Figure 1c right UL29, Supplementary Figure 1b)
- Summary of HSV-1 UL19 or UL29-expressing HeLa cells: HeLa_HSV1_MOIs_infectedCells.csv (Supplementary Figure 1a right)
- Cellular transcript counts: HeLa_EEA1_spotCounts.csv, HeLa_ERBB2_spotCounts.csv, HeLa_HPRT1_spotCounts.csv, and HeLa_RELA_spotCounts.csv (Supplementary Figure 1b)
- Single-cell feature values: HeLa_smFISH_IF_mlr.csv (Supplementary Figure 1c)

HeLa cells were mock- or HSV-1-infected (indicated by "condition"). After fixation, HSV-1 UL19 and UL29 and cellular HPRT-1, EEA1, ERBB2, and RELA transcripts were detected by single-molecule RNA fluorescence in situ hybridization (smFISH). Transcript quantification, single-cell feature extraction, and classification of cells were applied as described in the paper.  Five replicates were used (indicated by “well_name”). Single-cell intensities are provided as background-subtracted, corrected, and normalised mean and sum intensity values for the whole-cell, nucleus, and cytoplasm, as appropriate. Other single-cell features are provided as normalised values. Data cleanup, correction, background subtraction, and normalisation were performed as described in the paper.
DOI: 10.17632/fxbzsgwpg9.1
title: MCU data

description: Data from the smFISH + 4i experiment in the paper "Cellular state landscape and herpes simplex virus type 1 infection progression are connected" by Pietilä et al., 2023:
- Pixel coordinates within single cells and their multiplexed cell unit (MCU)-identity (Figure 4f): mcu_pixel_coordinates_mcuIDs.csv.gz
- Summary of normalised 4i marker intensities in MCUs (Figure 4a): mcu_marker_intensities.csv
- Summary of MCU occupancy (Figure 4b): mcu_occupancy.csv
- SPS values of MCUs (Figure 4f): mcu_sps.csv
- Summaries of UMAP coordinates of MCUs (Figure 4c,d): mcu_umap_allCells.csv and mcu_umap_infectedCells_12h.csv
- Single-cell features to cluster infected cells into subpopulations (Figure 4e): mcu_leiden_infectedCells_12h.csv
- Single-cell morphology features of cell subpopulations (Figure 4g): mcu_leiden_morphology_features.csv

HeLa cells were infected with HSV-1, fixed at different time points (indicated by "timePoint"), and iterative indirect immunofluorescence imaging (4i) was performed as described in the paper. Cells were classified into uninfected cells without infected neighbors, uninfected cells with infected neighbors, and infected cells (indicated by “classification_infection”) as described in the paper. Single-pixel intensities are provided as corrected and normalised intensity values. Single-cell morphology features are provided as normalised values. MCU construction from single-pixel intensities, correction, normalisation, and Leiden clustering were performed as described in the paper.
DOI: 10.17632/xzt9f3jwfc.1
title: Dataset on Nutritional composition, descriptive sensory analysis and consumer acceptability of processed Red-billed quelea birds’ meat in Ta+nzania

description: This dataset provides five tables and six figures, and their corresponding raw data (as supplementary material). Figure 1 shows the Slaughtering procedure for birds and Figure 2 shows the live birds' flock and the slaughtered birds' meat. Table 1 presents the Sensory attributes and their description developed by assessors during training. Table 2 presents the Proximate composition and energy values of raw and processed birds’ meat and corresponds to raw data (S 1). Table 3 presents the mineral contents of birds’ meat and it corresponds to raw data (S 2). Figure 3.  presents the systematic variations of proximate composition and mineral contents between processed meat samples and corresponds to raw data (S 1 and S 2). Figure 4 presents the mean intensity scores of processed birds’ meat samples raw data and Figure 5 presents the bi-plot from PCA of descriptive sensory data for processed meat samples. Both figures correspond to raw data (S 3). Furthermore, Table 4 presents the consumer panel characteristics and it corresponds to raw data (S 4) while Figure 6 presents the overall consumer acceptability of the processed birds' meat samples and it corresponds to raw data (S 5). Table 5 presents the Friedman rank sum test of the processed birds’ meat samples (Consumer preferences) and it corresponds to raw data (S 6).
DOI: 10.17632/3v2c2s3r75.1
title: Raw gamma data from Shangsi sectio

description: Raw gamma data collected from the Shangsi section (Note: 0~137.4 corresponds to from Wujiaping Formation to Feixianguan Formation)
DOI: 10.17632/bfjp4n5ykf.1
title: SUBJECTIVE PERCEPTION OF LIFE SITUATION IN LOW-INCOME FAMILIES

description: This paper is initially published as part of the Proceedings of the 7th SWS International Scientific Arts And Humanities - ISCAH 20220, Volume 7, Issue 1
Scientific Area: ART & HUMANITIES
Authors: 	International authors
DOI 10.35603/sws.iscah.2020
ISSN 2682-9959
ISBN 978-619-7603-02-6
Conference Proceedings Paper
DOI: 10.17632/z4f53mdy6t.1
title: Oxygenolytic sulfoquinovose degradation by an iron-dependent alkanesulfonate dioxygenase

description: Source data underlying Figure 2-5, Figure S3-S7 and Figure S9 are provided as aCombination Source Data file.
DOI: 10.17632/z4f53mdy6t.2
title: Oxygenolytic sulfoquinovose degradation by an iron-dependent alkanesulfonate dioxygenase

description: Source data underlying Figure 2-5, Figure S3-S6 and Figure S8 are provided as a Combination Source Data file.
DOI: 10.25345/c5pc2tk57
title: MassIVE MSV000092511 - Translational Genome Mining for Natural Products
title: Chemical extraction from different strains of Escovopsis
DOI: 10.6084/m9.figshare.22734917.v1
title: Supplementary material to <em>Rhizobium brockwellii</em> sp. nov., <em>Rhizobium johnstonii </em>sp. nov. and <em>Rhizobium beringeri</em> sp. nov., three genospecies within the <em>Rhizobium leguminosarum</em> species complex

description: Supplementary data for <em>Rhizobium brockwellii</em> sp. nov., <em>Rhizobium johnstonii </em>sp. nov. and <em>Rhizobium beringeri</em> sp. nov., three genospecies within the <em>Rhizobium leguminosarum</em> species complex , as described in <em>International Journal of Systematic and Evolutionary Microbiology.</em>
DOI: 10.6084/m9.figshare.22734917
title: Supplementary material to <em>Rhizobium brockwellii</em> sp. nov., <em>Rhizobium johnstonii </em>sp. nov. and <em>Rhizobium beringeri</em> sp. nov., three genospecies within the <em>Rhizobium leguminosarum</em> species complex

description: Supplementary data for <em>Rhizobium brockwellii</em> sp. nov., <em>Rhizobium johnstonii </em>sp. nov. and <em>Rhizobium beringeri</em> sp. nov., three genospecies within the <em>Rhizobium leguminosarum</em> species complex , as described in <em>International Journal of Systematic and Evolutionary Microbiology.</em>
DOI: 10.6073/pasta/9943dc9f5b04e9d24424911c19349b58
title: Chemical and sediment characteristics of ice cores collected from the ablation zones of Canada, Commonwealth, Howard, Hughes, and Seuss Glaciers in the McMurdo Dry Valleys, Antarctica from 2015 to 2019

description: This data package contains chemical and sediment characteristics of ice cores collected from the ablation zones of five glaciers in Taylor Valley, located in the McMurdo Dry Valleys region of Antarctica, during the 2015-16, 2016-17, 2017-18, and 2018-19 austral summers. Specifically, shallow ice cores were collected from the ablation zones of Hughes, Howard, Seuss, Commonwealth, and Canada Glaciers in order to characterize the spatial and temporal evolution of ice chemistry and sediment concentration across Taylor Valley. Cores were collected in triplicate from each sampling location and measured 79 mm in diameter and up to 1 m in depth. Cores were sectioned in 5 cm (0-25 cm depth) and 25 cm increments (25 cm to the maximum depth of the core) prior to analyzing chemical and sediment characteristics.
DOI: 10.6073/pasta/b217f5f36d18d149a8f52f17a7823f1d
title: Biomass, stoichiometry, and isotopic signatures of stream microbial mats, McMurdo Dry Valleys, Antarctica (2012-2013)

description: We conducted a field survey to quantify the biomass (chlorophyll-a and ash-free dry mass), nutrient ratios (molar C:N:P), and isotopic signatures (δ13C and δ15N) of four microbial mat types (green, orange, black, and red) in the glacial meltwater streams of the McMurdo Dry Valleys, Antarctica. All samples were taken from late December to late January during the 2011-2012 and 2012-2013 austral summers, and included sites from Taylor, Miers, Garwood, and Wright valleys. Most collection sites were located at the lake outlet of streams, but for a subset (e.g. Delta, Von Guerard, Onyx, Miers, and Canada) more than one sample site is included per stream system.
DOI: 10.6073/pasta/c87ffaba606214a37ff3f932b3a0889b
title: McMurdo Dry Valleys Microbial mat biomass, isotopes, and nutrient ratios sampled over a longitudinal gradient of two McMurdo Dry Valley streams

description: We performed a field survey to assess changes in biomass, nutrient ratios, and isotopic signatures of three different microbial mat types in two glacial meltwater streams in the McMurdo Dry Valleys, Antarctica. Samples were taken in January 2013 from pre-existing transects over Von Guerard Stream and the Relict Channel, and stretched from near the Von Guerard Glacier terminus to the stream outlets at Lake Fryxell. In addition to the three microbial mat types, which included Nostoc (black), Chlorophyte (green), and Oscillatorean (orange) mats, particulate organic matter (POM) was collected from Von Guerard Stream in January 2008 over a full diel cycle in order to determine the origin of material in transport by comparing its elemental and isotopic characteristics with stream mats.
DOI: 10.6084/m9.figshare.23710773
title: BirthsData for Aotus azarae

description: Births and fates (presumed dispersal, confirmed dispersal, death, still in natal group, or unknown) of offspring born in each of 30 social groups of Azara’s owl monkeys (<em>A. azarae</em>) at the Owl Monkey Project study site in Formosa, Argentina between 1996 and 2021. We classified the absence of an individual from its natal group between 1997 and 2020 in one of three categories: presumed dispersal, confirmed dispersal, or dead. A “presumed dispersal” refers to an individual, 18 months or older, missing from its natal group that was not seen again outside of the natal group. We chose 18 months as the minimum age for a potential dispersal because this is the youngest age when an offspring in the study population has been confirmed to leave the natal group and survive independently. We use “confirmed dispersal” for an individual that, after leaving its natal group, we observed ranging solitarily, or living as an adult in a new group. We distinguish between presumed and confirmed dispersal because, while it is reasonable to presume that a missing offspring &gt; 18 months has dispersed, it is still possible that some of them may be missing because they died while still in their natal groups. We classified an individual less than 18 months old as “dead” when missing from its natal group; those 18 months or older were considered “dead” when observers found the remains within the home range of the natal group.
DOI: 10.6084/m9.figshare.23710773.v1
title: BirthsData for Aotus azarae

description: Births and fates (presumed dispersal, confirmed dispersal, death, still in natal group, or unknown) of offspring born in each of 30 social groups of Azara’s owl monkeys (<em>A. azarae</em>) at the Owl Monkey Project study site in Formosa, Argentina between 1996 and 2021. We classified the absence of an individual from its natal group between 1997 and 2020 in one of three categories: presumed dispersal, confirmed dispersal, or dead. A “presumed dispersal” refers to an individual, 18 months or older, missing from its natal group that was not seen again outside of the natal group. We chose 18 months as the minimum age for a potential dispersal because this is the youngest age when an offspring in the study population has been confirmed to leave the natal group and survive independently. We use “confirmed dispersal” for an individual that, after leaving its natal group, we observed ranging solitarily, or living as an adult in a new group. We distinguish between presumed and confirmed dispersal because, while it is reasonable to presume that a missing offspring &gt; 18 months has dispersed, it is still possible that some of them may be missing because they died while still in their natal groups. We classified an individual less than 18 months old as “dead” when missing from its natal group; those 18 months or older were considered “dead” when observers found the remains within the home range of the natal group.
DOI: 10.5519/qd.iw1lih16
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (45 records)
DOI: 10.17632/3mwstbcyzv.1
title: smFISH + 4i experiment – single-cell feature values and summaries

description: Data from the smFISH + 4i experiment in the paper "Cellular state landscape and herpes simplex virus type 1 infection progression are connected" by Pietilä et al., 2023:
- Single-cell feature values: HeLa_smFISH_4i_cellular_features.csv.gz (Figure 1e, 2b, 2c, 2d, 2e, 3, 5b, 5c, 6a, 7a, 7c, 7d, 7e, 7f, 8, and Supplementary 3e, 3f, 4b, 6, 7, 9a, and 9d) and HeLa_smFISH_4i_viral_features.csv (Figure 3)
- Single-cell spot count of HSV-1 UL19 and UL29 transcripts in HeLa cells: HeLa_smFISH_4i_UL19_spotCounts.csv (Figure 1c left UL19) and HeLa_smFISH_4i_UL29_spotCounts.csv (Figure 1c left UL29)
- Summary of HSV-1 UL19 or UL29-expressing HeLa cells: HeLa_smFISH_4i_UL19_UL29_expressingCells.csv (Supplementary Figure 1a left)
- Summary of ICP5 virion-containing HeLa cells: HeLa_smFISH_4i_virions_percentage.csv (Supplementary Figure 3b)
- Summary of infected HeLa cells: HeLa_smFISH_4i_infectedCells.csv (Supplementary Figure 3c)

HeLa cells were mock infected or infected with HSV-1 and fixed at different time points (indicated by "timePoint"). After fixation, the transcripts were detected by single-molecule RNA fluorescence in situ hybridization (smFISH) and viral and cellular markers by iterative indirect immunofluorescence imaging (4i). Single-cell feature extraction, and classification of cells were applied as described in the paper. Two or four replicates were used for mock and HSV-1 infection, respectively (indicated by “well_name”). Single-cell intensities are provided as corrected and background-subtracted or corrected, background-subtracted, and normalised mean and sum intensity values for the nucleus, cytoplasm, and whole-cell, as appropriate. Single-cell textures are provided as corrected and normalised texture values for the nucleus, cytoplasm, and whole-cell. Other single-cell features are provided with or without normalisation. Data cleanup, correction, background subtraction, and normalisation were performed as described in the paper.
DOI: 10.17632/5pmwn53hbg.1
title: Five Characteristics Rating Scale (FCRS)

description: This data is a survey during the epidemic of covid-19 to medical students, for evaluating the ideological and political education of medical students. A total of 1966 medical students were surveyed in this survey, and all participants were aware that the questionnaire was anonymous. The scale uses a scoring system with a total of 19 items to investigate the ideological and moral quality of medical students from the aspects of humanistic medicine, social responsibility.
DOI: 10.17632/wgccj9sr5t.1
title: Rawdata for the manuscript "Temporal dynamics of understanding communicative intentions from speech prosody"

description: The dataset includes the raw data for the manuscript "Temporal dynamics of understanding communicative intentions from speech prosody"
DOI: 10.17632/wgccj9sr5t.2
title: Rawdata for the manuscript "Temporal dynamics of understanding communicative intentions from speech prosody"

description: The dataset includes the raw data for the manuscript "Temporal dynamics of understanding communicative intentions from speech prosody"
DOI: 10.17632/rxt59wynsc.1
title: CULTURAL PRACTICES OF THE BAGOS

description: This study assessed the Cultural Practices of Bagos in Region 1 and how these affect their education. It specifically answered the questions: 1) What is the profile of the Bagos in the following provinces in Region I 2.)  What is the extent of manifestation of the cultural practices of the Bagos.
DOI: 10.17632/rxt59wynsc.2
title: CULTURAL PRACTICES OF THE BAGOS

description: This study assessed the Cultural Practices of Bagos in Region 1 and how these affect their education. It specifically answered the questions: 1) What is the profile of the Bagos in the following provinces in Region I 2.)  What is the extent of manifestation of the cultural practices of the Bagos.
DOI: 10.17632/9wh3bn64h6.1
title: David Ricardo’s Principle of Comparative Cost Advantage inspires International Trade.

description: David Ricardo’s Principle of Comparative Cost Advantage inspires International Trade.