cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6377970
title: Moment rate functios of shallow very low frequency earthquakes off the Cape Muroto and Kii Channel, along the Nankai Trough, Japan

description: Moment rate functions of shallow very low frequency earthquakes (VLFEs) that occurred off the Cape Muroto and Kii Channel. A similar catalog but for southeast off the Kii Penisula can be downloaded from https://doi.org/10.5281/zenodo.5211090 This data set is the supplement of "Takemura, S., Baba, S., Yabe, S., Emoto, K., Shiomi, K., & Matsuzawa, T. (2022). Source characteristics and along-strike variations of shallow very low frequency earthquake swarms on the Nankai Trough shallow plate boundary. <em>Geophysical Research Letters</em>, 49, e2022GL097979. https://doi.org/10.1029/2022GL097979" <strong>Included files</strong> YYYY-MM-DDThhmmssparam.stf<br> Parameter file for the Monte-Carlo-based simulated annealing estimation for a shallow VLFE occurred at hh:mm:ss on DDth MM YYYY (JST). Detection time, correlation coefficient, longitude, latitude, ratio (internal parameter), template index (internal parameter), assumed strike angle, dip angle, rake angle, source grid index (internal parameter), the number of the used stations, station list are included. YYYY-MM-DDThhmmss_STF.dat<br> Moment rate function for a shallow VLFE occurred at hh:mm:ss on DDth MM YYYY (JST). The optimal and original simulated annealing estimations are listed in the 2nd and 3rd columns, respectively. The time from the origin is represented in the 1st column VLFE_catalog.csv<br> CSV format file of Shallow VLFE catalog from Apr. 2004 to Mar. 2021. Origin time (JST), origin time (UTC), longitude (ºE), latitude (ºN), seismic moment (Nm), duration (s), VR (%), and Mw are listed. Data Set S1<br> CSV format file of shallow VLFE swarm catalog. Origin time (JST), epicenter locations, seismic moments, durations, moment magnitudes, VRs, and swarm indexes of each shallow VLFE. The “-” in the swarm index column means that this shallow VLFE does not belong to shallow VLFE swarms. <strong>Citation</strong> Takemura, S., Baba, S., Yabe, S., Emoto, K., Shiomi, K., & Matsuzawa, T. (2022). Source characteristics and along-strike variations of shallow very low frequency earthquake swarms on the Nankai Trough shallow plate boundary. <em>Geophysical Research Letters</em>, 49, e2022GL097979. https://doi.org/10.1029/2022GL097979 This data doi
DOI: 10.5281/zenodo.5824418
title: Moment rate functios of shallow very low frequency earthquakes off the Cape Muroto and Kii Channel, along the Nankai Trough, Japan

description: Moment rate functions of shallow very low frequency earthquakes (VLFEs) that occurred off the Cape Muroto and Kii Channel. A similar catalog but for southeast off the Kii Penisula can be downloaded from https://doi.org/10.5281/zenodo.5211090 This data set is the supplement of "Takemura, S., Baba, S., Yabe, S., Emoto, K., Shiomi, K., & Matsuzawa, T. (2022). Source characteristics and along-strike variations of shallow very low frequency earthquake swarms on the Nankai Trough shallow plate boundary. <em>Geophysical Research Letters</em>, 49, e2022GL097979. https://doi.org/10.1029/2022GL097979" <strong>Included files</strong> YYYY-MM-DDThhmmssparam.stf<br> Parameter file for the Monte-Carlo-based simulated annealing estimation for a shallow VLFE occurred at hh:mm:ss on DDth MM YYYY (JST). Detection time, correlation coefficient, longitude, latitude, ratio (internal parameter), template index (internal parameter), assumed strike angle, dip angle, rake angle, source grid index (internal parameter), the number of the used stations, station list are included. YYYY-MM-DDThhmmss_STF.dat<br> Moment rate function for a shallow VLFE occurred at hh:mm:ss on DDth MM YYYY (JST). The optimal and original simulated annealing estimations are listed in the 2nd and 3rd columns, respectively. The time from the origin is represented in the 1st column VLFE_catalog.csv<br> CSV format file of Shallow VLFE catalog from Apr. 2004 to Mar. 2021. Origin time (JST), origin time (UTC), longitude (ºE), latitude (ºN), seismic moment (Nm), duration (s), VR (%), and Mw are listed. Data Set S1<br> CSV format file of shallow VLFE swarm catalog. Origin time (JST), epicenter locations, seismic moments, durations, moment magnitudes, VRs, and swarm indexes of each shallow VLFE. The “-” in the swarm index column means that this shallow VLFE does not belong to shallow VLFE swarms. <strong>Citation</strong> Takemura, S., Baba, S., Yabe, S., Emoto, K., Shiomi, K., & Matsuzawa, T. (2022). Source characteristics and along-strike variations of shallow very low frequency earthquake swarms on the Nankai Trough shallow plate boundary. <em>Geophysical Research Letters</em>, 49, e2022GL097979. https://doi.org/10.1029/2022GL097979 This data doi
DOI: 10.6084/m9.figshare.21507774
title: First Report of Chromosome-Level Genome Assembly for Lance Asiabell (Codonopsis lanceolata), A Medicinal and Vegetable Plant in the Campanulaceae Family

description: Files for the genome sequence, annotated information, and functional annotation of <em>Codonopsis lanceolata</em> File Description Clanceolata_genome_20200909.zip: - Genome sequence and annotation information (gff, cds, protein) of Codonopsis lanceolata Clanceolata_functional_annotation_20221106.zip: - Function annotation filesof gene set predicted in genome sequence of Codonopsis lanceolata
DOI: 10.6084/m9.figshare.21507813
title: DATA PROFILE.zip

description: This dataset is generated by Depthmap software and is the syntax result of classical laboratories in history, including nine cases of Uraniborg, Stellaeburg, the Chemical House, Fraunhofer Institutes, Physiological Institute, University of Leipzig, Physiological Institute, University of Budapest, Northwestern University Technological Institute, ESSO Research Center, and Koppers Company Research Center.
DOI: 10.6084/m9.figshare.21507813.v1
title: DATA PROFILE.zip

description: This dataset is generated by Depthmap software and is the syntax result of classical laboratories in history, including nine cases of Uraniborg, Stellaeburg, the Chemical House, Fraunhofer Institutes, Physiological Institute, University of Leipzig, Physiological Institute, University of Budapest, Northwestern University Technological Institute, ESSO Research Center, and Koppers Company Research Center.
DOI: 10.5281/zenodo.4279753
title: MIGNON test dataset

description: This entry contains the required data to perform the test run of MIGNON
DOI: 10.5281/zenodo.4279752
title: MIGNON test dataset

description: This entry contains the required data to perform the test run of MIGNON
DOI: 10.5281/zenodo.7296555
title: Transportation demands of brazilian carrier in 2020 and 2021

description: This dataset contians daily demands of the dispatch locations of a brazilian carrier, considering the order id, weight, volume, source location and item commodity.
DOI: 10.5281/zenodo.7296554
title: Transportation demands of brazilian carrier in 2020 and 2021

description: This dataset contians daily demands of the dispatch locations of a brazilian carrier, considering the order id, weight, volume, source location and item commodity.
DOI: 10.6084/m9.figshare.21507843
title: Introduction of the Ellavi Uterine Balloon Tamponade into the Kenyan and Ghanaian maternal health care package for improved postpartum hemorrhage management: an implementation research study

description: <strong>Objectives: </strong>Use of intrauterine balloon tamponades (UBTs) for management of refractory postpartum hemorrhage (PPH) has triggered recent debate. Research suggests that UBT use is associated with improved PPH-related outcomes but effectiveness studies have yielded conflicting evidence. Implementation research is needed to identify factors influencing the successful integration of UBTs into maternal health care packages. The Ellavi UBT (Ellavi) is a new low-cost, preassembled device used to treat refractory PPH. <strong>Methods:</strong> We conducted a longitudinal, mixed-methods, implementation research study to determine the adoption, sustainability, acceptability, feasibility, and fidelity of introducing the Ellavi into maternal health care packages. Obstetric staff (n=451) were trained across six hospitals in Ghana and Kenya and administered cross-sectional surveys post-training and post-use of the Ellavi over 10 months.
DOI: 10.6084/m9.figshare.21507843.v1
title: Introduction of the Ellavi Uterine Balloon Tamponade into the Kenyan and Ghanaian maternal health care package for improved postpartum hemorrhage management: an implementation research study

description: <strong>Objectives: </strong>Use of intrauterine balloon tamponades (UBTs) for management of refractory postpartum hemorrhage (PPH) has triggered recent debate. Research suggests that UBT use is associated with improved PPH-related outcomes but effectiveness studies have yielded conflicting evidence. Implementation research is needed to identify factors influencing the successful integration of UBTs into maternal health care packages. The Ellavi UBT (Ellavi) is a new low-cost, preassembled device used to treat refractory PPH. <strong>Methods:</strong> We conducted a longitudinal, mixed-methods, implementation research study to determine the adoption, sustainability, acceptability, feasibility, and fidelity of introducing the Ellavi into maternal health care packages. Obstetric staff (n=451) were trained across six hospitals in Ghana and Kenya and administered cross-sectional surveys post-training and post-use of the Ellavi over 10 months.
DOI: 10.6084/m9.figshare.21507880.v1
title: Additional file 2 of Combinatorial targeting of menin and the histone methyltransferase DOT1L as a novel therapeutic strategy for treatment of chemotherapy-resistant ovarian cancer

description: Supplementary Material 2: Table S1A. Differentially expressed transcripts in PEO1 cells transfected with MEN1-targeting siRNA vs transfected with scramble siRNA, determined by stranded RNA-Seq. Table S1B. Differentially expressed transcripts in PEO4 cells transfected with MEN1-targeting siRNA vs transfected with scramble siRNA, determined by stranded RNA-Seq. Table S1C. Differentially expressed transcripts in PEO1 cells following MI-136 (0.8 µM) treatment for 9 days. Table S1D. Differentially expressed transcripts in PEO4 cells following MI-136 (0.8 µM) treatment for 9 days. Table S1E. Differentially expressed transcripts in PEO1 cells following EPZ5676 (3.2 µM) treatment for 9 days. Table S1F. Differentially expressed transcripts in PEO4 cells following EPZ5676 (3.2 µM) treatment for 9 days. Table S1G. Differentially expressed transcripts in PEO1 cells following EPZ5676 (3.2 µM) and MI-136 (0.8 µM) treatment for 9 days. Table S1H. Differentially expressed transcripts in PEO4 cells following EPZ5676 (3.2 µM) and MI-136 (0.8 µM) treatment for 9 days
DOI: 10.6084/m9.figshare.21507883
title: Additional file 3 of Combinatorial targeting of menin and the histone methyltransferase DOT1L as a novel therapeutic strategy for treatment of chemotherapy-resistant ovarian cancer

description: Supplementary Material 3: Table S2A. Concordantly deregulated statistically significant signalling pathways determined by IPA following MEN1 silencing in PEO1 and PEO4 cells. Table S2B. Concordantly deregulated statistically significant gene sets determined by GSEA following MEN1 silencing in PEO1 and PEO4 cells
DOI: 10.6084/m9.figshare.21507883.v1
title: Additional file 3 of Combinatorial targeting of menin and the histone methyltransferase DOT1L as a novel therapeutic strategy for treatment of chemotherapy-resistant ovarian cancer

description: Supplementary Material 3: Table S2A. Concordantly deregulated statistically significant signalling pathways determined by IPA following MEN1 silencing in PEO1 and PEO4 cells. Table S2B. Concordantly deregulated statistically significant gene sets determined by GSEA following MEN1 silencing in PEO1 and PEO4 cells
DOI: 10.6084/m9.figshare.21507884
title: Additional file 4 of A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata

description: Additional file 4: Supplementary Table 1. Description of metagenomes and assemblies. Number of metagenomic short reads sequenced and mapped to the different assemblies and MAGs.
DOI: 10.6084/m9.figshare.21507884.v1
title: Additional file 4 of A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata

description: Additional file 4: Supplementary Table 1. Description of metagenomes and assemblies. Number of metagenomic short reads sequenced and mapped to the different assemblies and MAGs.
DOI: 10.6084/m9.figshare.21507887
title: Additional file 5 of A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata

description: Additional file 5: Supplementary Table 2. Description of MAGs. Anvi’o statistics, mean coverage of MAGs and taxonomic assignments obtained with GTDB-Tk.
DOI: 10.6084/m9.figshare.21507887.v1
title: Additional file 5 of A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata

description: Additional file 5: Supplementary Table 2. Description of MAGs. Anvi’o statistics, mean coverage of MAGs and taxonomic assignments obtained with GTDB-Tk.
DOI: 10.6084/m9.figshare.21507890
title: Additional file 6 of A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata

description: Additional file 6: Supplementary Table 3. MAG single-copy core genes for domain bacteria for each of the 20 studied MAGs.
DOI: 10.6084/m9.figshare.21507890.v1
title: Additional file 6 of A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata

description: Additional file 6: Supplementary Table 3. MAG single-copy core genes for domain bacteria for each of the 20 studied MAGs.
DOI: 10.6084/m9.figshare.21507893
title: Additional file 7 of A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata

description: Additional file 7: Supplementary Table 4. List and copy numbers of the genes featured in Figure 4.
DOI: 10.6084/m9.figshare.21507893.v1
title: Additional file 7 of A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata

description: Additional file 7: Supplementary Table 4. List and copy numbers of the genes featured in Figure 4.
DOI: 10.6084/m9.figshare.21507896
title: Additional file 8 of A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata

description: Additional file 8: Supplementary Table 5. CRISPRs with evidence level 4 and their cas genes found in the MAG contigs.
DOI: 10.6084/m9.figshare.21507896.v1
title: Additional file 8 of A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata

description: Additional file 8: Supplementary Table 5. CRISPRs with evidence level 4 and their cas genes found in the MAG contigs.
DOI: 10.6084/m9.figshare.21507899
title: Additional file 9 of A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata

description: Additional file 9: Supplementary Table 6. gANI percent identity and percent alignment coverage between Deferribacteres and Hepatoplasmataceae MAGs and their most closely related GTDB genomes.
DOI: 10.6084/m9.figshare.21507899.v1
title: Additional file 9 of A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata

description: Additional file 9: Supplementary Table 6. gANI percent identity and percent alignment coverage between Deferribacteres and Hepatoplasmataceae MAGs and their most closely related GTDB genomes.
DOI: 10.6084/m9.figshare.21507880
title: Additional file 2 of Combinatorial targeting of menin and the histone methyltransferase DOT1L as a novel therapeutic strategy for treatment of chemotherapy-resistant ovarian cancer

description: Supplementary Material 2: Table S1A. Differentially expressed transcripts in PEO1 cells transfected with MEN1-targeting siRNA vs transfected with scramble siRNA, determined by stranded RNA-Seq. Table S1B. Differentially expressed transcripts in PEO4 cells transfected with MEN1-targeting siRNA vs transfected with scramble siRNA, determined by stranded RNA-Seq. Table S1C. Differentially expressed transcripts in PEO1 cells following MI-136 (0.8 µM) treatment for 9 days. Table S1D. Differentially expressed transcripts in PEO4 cells following MI-136 (0.8 µM) treatment for 9 days. Table S1E. Differentially expressed transcripts in PEO1 cells following EPZ5676 (3.2 µM) treatment for 9 days. Table S1F. Differentially expressed transcripts in PEO4 cells following EPZ5676 (3.2 µM) treatment for 9 days. Table S1G. Differentially expressed transcripts in PEO1 cells following EPZ5676 (3.2 µM) and MI-136 (0.8 µM) treatment for 9 days. Table S1H. Differentially expressed transcripts in PEO4 cells following EPZ5676 (3.2 µM) and MI-136 (0.8 µM) treatment for 9 days
DOI: 10.5281/zenodo.5999590
title: HISAR - Hydrologic Indices of South American Rivers

description: This is a preview of the HISAR dataset (Hydrologic Indices of South American Rivers). The HISAR dataset is freely available for non-commercial use. The files provided are (i) drainage line shapefile with river reaches as represented by the MGB model and 73 attributes corresponding to hydrologic indices derived from simulated time series; (ii) gauge points shapefile with 73 attributes corresponding to hydrologic indices derived from observed time series; (iii) maps with hydrologic indices, (iv) maps with information of the error of some indices and (v) the scripts used to calculate the indices. This database provides a spatial view of the variability of the river flow regime characteristics. The line shapefile has 33,749 river reaches with an average length of 15 km and drainage area &gt; 1000 km². The ESRI shapefile also has the attributes of drainage area (<em>Upst_Area_</em> in km²), length (<em>Ltr_Km_ in</em> km), <em>UC</em> (corresponding catchment attribute from hydrological modelling), <em>HYear_min</em> (starting month of the hydrological year of minimum flow) and <em>HYear_max</em> (starting month of the hydrological year of maximum flow). A value of -9999999 is used as a symbol of ‘no data’. Some river reaches do not have all hydrologic indices calculated, due to series of streamflows that could not meet specific criteria. For instance, the baseflow recession constant was automatically calculated using at least five consecutive days of decreasing streamflow, all of which below the Q90 (streamflow value that is exceeded 90% of the time), and this condition was not found in all cases. The gauge points shapefile has 1329 points with 73 attributes corresponding to hydrologic indices derived from observed time series. The drainage area of the gauges ranging from 1,000 to 4,703,503 km<sup>2</sup>. The ESRI shapefile also has the attributes of code, name, latitude (lat), longitude (long), drainage area (<em>Upst_Area_</em> in km²), Country were the gauge point are located, <em>HYear_min</em> (starting month of the hydrological year of minimum flow) and <em>HYear_max</em> (starting month of the hydrological year of maximum flow). A value of -9999999 is used as a symbol of ‘no data’. For more information about HISAR dataset see the journal article DOI: in preparation.
DOI: 10.5281/zenodo.5999591
title: Hydrologic Indices of South America Rivers - HISAR

description: Rivers provide important environmental services related to the preservation and support of aquatic ecosystems, play an important role in the hydrological cycle of watersheds and support socioeconomic activities such as city water supply, industrial supply, agriculture, navigation and electricity generation. Understanding the behavior of rivers is of paramount importance, as changes in their characteristics can cause impacts, and the analysis of river behavior gives us an overview of water availability. The behavior of rivers can be understood and adequate through the study of the flow regime, which is described by the pattern of flow characteristics of a river, such as magnitude, predictability and variability of flows. This work aimed to characterize the natural flow regime of rivers in South America, analyzing their average parameters of hydrological indices, performing an analysis of the accuracy of hydrological indices estimated from data flows by hydrological modeling and to develop a database with these indexes. To obtain the hydrological indices, series of daily natural flows estimated by hydrological modeling were used, using the Large Basin Hydrological Model (MGB), in a series of flows from 1980 to 2014 (35 years), and were subsequently calculated 73 hydrological indices. For the analysis of the accuracy of the hydrological modeling, the indices were calculated with series of observed flows, which were compared with the indices estimated through relative error, absolute error and correlation. The observed hydrological indices were obtained using flow rates from fluviometric stations in South America, after passing through a quality filtering, resulting in a total of 1329 stations. The database was built through the elaboration of maps with the main hydrological indices analyzed and the river indices were made available on an online platform in the ESRI shapefile file format. The results obtained for the analysis of hydrological indices allowed us to observe patterns of behavior of the river flow regime, related, for example, to climate and hydrogeology, as well as relationships between the indices themselves. The relative error was calculated for 1329 points (corresponding to fluviometric stations) for 56 indices selected for this analysis, with this we obtained that the average of the medians of the calculated errors of the hydrological indices is 33.2%. With the database we can obtain a spatial view of the behavior of rivers, including rivers that still do not have information on the flow regime. Thus, we can conclude that the series of flows estimated by hydrological modeling have satisfactory representations of the presented hydrological indices. Among the contributions of this work, we can highlight the presentation of hydrological indices and their database, which can be used as a tool for understanding hydrological processes in South America.
DOI: 10.5281/zenodo.6385589
title: HISAR - Hydrologic Indices of South America Rivers

description: This is a preview of the HISAR dataset (Hydrologic Indices of South America Rivers). The files provided are (i) a ESRI shapefile with river reachs discretized in the hydrological modeling ,carried out with the MGB (Modelo de Grandes Bacias), of South America and their respective 74 hydrologic indices as their attributes, (ii) maps with hydrologic indices, (iii) maps of the spatialization of the error of some indices and (iv) the scripts used to calculate the indices. This database can give a spatial view of the variability of the characteristics of the river flow regime trough the hidrologic indices. The ESRI shapefile has 39,168 river reaches, with an average length of 15 km, over the South American continental area and has 74 hydrologic indices as its attributes. The ESRI shapefile also has the attributes of drainage area (km²), length (decimal degrees), UC (corresponding catchment attribute from hydrological modelling), HYear_min (representing the month of the start of the hydrological year of minimum flow) and HYear_max (the month of the start of the hydrological year of maximum flow). A few attribute values of hidrologic indices are equal to -9999999, which means that the value of the hidrological indices calculated was not obtained. For more information about HISAR dataset see the journal article DOI.