cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/g8xz5vdds8.1
title: Interdisciplinary Research Maps - Scattertext input

description: Files attached here are (1) Management journals results (data downloaded from Scopus), (2) Environmental journal results (data downloaded from Scopus), and (3) Scattertext Input.
DOI: 10.5281/zenodo.4003703
title: GAP-20 machine learning force field for phosphorus

description: This dataset contains the force-field parameter files and reference database described in the manuscript "A general-purpose machine-learning force field for bulk and nanostructured phosphorus" (to be published).
DOI: 10.5281/zenodo.4003702
title: GAP-20 machine learning force field for phosphorus

description: This dataset contains the force-field parameter files and reference database described in the manuscript "A general-purpose machine-learning force field for bulk and nanostructured phosphorus" (to be published).
DOI: 10.17632/gppkczgr4f.1
title: ERUMARG Workshop Materials

description: 2nd ILTERG Conference ERUMARG Workshop Materials
DOI: 10.17632/wm9dg6bnkt.1
title: Data-set of academic difficulties among students in western Uganda during COVID-19 induced lockdown

description: This academic research explicit the data-set of academic difficulties among different age groups of students studying in various schools, colleges, or Universities during the COVID-19 induced lockdown. The western part of Uganda comprises 26 districts and the survey was conducted in those regions employing a simple random sampling technique. The dataset are descriptive and an aggregate of 405 students participated in this survey. Among that, 253 students are from rural regions, 59 students are from semi-urban regions and 93 students are from urban regions. This survey was started in April 2020 and data were collected till June 2020. A statistical run was made with the aid of SPSS version 20 software to evaluate the significance level (P-Value&lt;0.05) of each question among the localities.
DOI: 10.17632/xfrt6hn67g.1
title: PUCV Recursos humanos para la investigación - Análisis de los doctorados

description: Recursos humanos para la investigación - Análisis de los doctorados La PUCV tiene una larga tradición de programas de doctorado acreditados. Estos han sido una respuesta natural a la evolución en la consolidación de fortalezas científicas: Doctorado en Ciencias mención Química (1982), Filosofía (1982), Lingüística (1993), Literatura (1994), Ciencias Física (2000), Biotecnología (2001), Ciencias de la Ingeniería con mención en Ingeniería Bioquímica (2001), Ingeniería Industrial (2012). Con el paso de los años han surgidos doctorados en conjunto con otras universidades de la región, como son la Universidad Técnica Federico Santa María, con quien se desarrolla los doctorados en Biotecnología, Ciencias Física, así como el Doctorado en Matemáticas, que junto con la UTFS se comparte con la Universidad de Valparaíso, generando sinergias regionales, investigación en colaboración, y formando egresados mejor preparados. Se han analizado los claustros de profesores y el de los egresados, comparando un conjunto amplio de indicadores de producción, rendimiento e impacto. Solo el doctorado en ciencias de los alimentos no tiene egresados. En el Anexo 5 Tabla 1, se muestra la comparación completa. Como es de esperar, los programas doctorales con claustros de profesores cuyos indicadores de performance e impacto son más altos, gradúan doctores con capacidades de generar resultados publicados en buenas las mejores revistas internacional y con impactos altos. indicadores de producción, performance e impacto de los claustros de profesores y de los egresados de cada programa doctoral. En la Tabla 1 se presenta de modo comparativo este primer grupo de programas. El claustro de profesores de más alto rendimiento cualitativo y cuantitativo es el del Doctorado Conjunto en Ciencias Física (2015-2019), cuyo claustro de profesores alcanza un impacto 3,01, muy superior al de Chile que es 1,22. El Doctorado en Ingenieria Industrial muestra un claustro que alcanza un Impacto Normalizado total de 1,53 y uno liderado de 1,98; sus egresados a su vez alcanzan un Impacto Normalizado de 1,86, superando a sus maestros. El Doctorado en Ciencias de la Ingenieria mención Ingeniería Bioquímica su claustro de profesores muestra un INwL por sobre el mundo, movilizando la producción de sus alumnos por sobre el promedio de América Latina. EL Doctorado en Lingüística muestra un claustro de profesores fuertes (INwL 1,1, por sobre el 0,7 de In de Chile), sin embargo, se aprecia como la producción en el área requiere alcanzar un mayor nivel de madurez científica de sus egresados. El Doctorado conjunto en Biotecnología muestra una frontera entre un claustro de profesores de dilatada solvencia científica y unos egresados que logra nivelar las competencias de sus maestros. Continua en Steps to reproduce.
DOI: 10.17632/cmcgy7b8cr.1
title: PUCV Número de revistas por mejor cuartil de publicación

description: Revistas científicas editadas por la PUCV La PUCV es la universidad chilena que edita la colección de revistas científicas indexadas internacionalmente de mejor calidad. Solo siete universidades chilenas editan más de 1 revista que este indexada internacionalmente. Si se compara la composición por cuartiles de las revistas editadas, se constata que la PUCV es la universidad que edita en terminaos absolutos y relativos una mayor cantidad de revistas Q1 y Q2 (Gráfico 1). Según Scimago Journal & Country Rank son las más prestigiosas revistas de América Latina en su respectiva categoría temática: Revista Signos en Language and Linguistics; Revista de Estudios Histórico-Jurídicos en Law; Electronic Journal of Biotechnology en Applied Microbiology and Biotechnology. La PUCV ofrece un a la comunidad internacional un conjunto de revistas cuyo Impacto Normalizado está por encima de el de su disciplina en Chile, ofreciendo una canal de comunicación de confianza de alta visibilidad e impacto, que ayuda a mejorar el desempeño científico del país en esas categorías.
DOI: 10.17632/b6252s2dzc.2
title: STEM Professionals Questionnaire Responses

description: With the aim of mobilizing engineers and scientists to address environmental, climate, and energy justice challenges, this data contains the responses of a convenience sample (n = 281) through an online questionnaire. Our study examines how engineers and scientists in the U.S. view their incentives, barriers, and potential for community-based collaborations.
DOI: 10.17632/wdfw5gpvrf.2
title: Dataset for data in brief: Thermoacidophilic Microbial Inoculum Enhanced Composting Efficiency of Lignocellulosic waste.

description: The role of thermoacidophic effective microbes (tEM) used as microbial innoculants during composting was assesed under two experimental condtions; 1) tEM with shadding (tEMA), 2) tEM without shadding (tEMB) and control group - no tEM with out shadding (C). Treatrment of thermoacidophilic microorganisms during composting of lignocellulosic waste improved microbial diversity and microbial abundance. The improved microbial structure subsequently enhanced composting efficiency (composting rate and quality of the final product). Gas/Biogas production: Hydrogen sulphide (ppm), carbon dioxide (%), oxygen (%), and methane (%) production were measured using a biogas analyzer (Optima7 MRU Instruments Inc. Emission monitoring systems, Humble, Texas, USA). Ammonia gas was analyzed by pumping 50 cm3 biogas through 2% Boric acid (pH of 4.5) using ETG 6900 P Ammonia (Etg Risorse & Tecnologia, Carpignano 23 Montiglio (AT) – Italy). And ammonium borate complex titrated with 0.05N H2SO4 and concentration of ammonia gas was calculated based on moles of standard acid consumed. Biogas evolution has a direct relationship with the microbial decomposition of organic. High concentration of biogases like hydrogen sulphide, methane and ammonia, could indicate anaerobic condition. Aerobic decomposition is a more efficient way of composting since most composting microbes are aerobic. Besides, aerobic composting reduces emission of biogas and thus enhance environmental suitability. Microbial evolution data was obtained over 120d composting period through metagenomic DNA sequencing and culture-based microbial enumeration at thermophilic and mesophilic temperatures. Compost treatment with microbial innoculum (tEMA and tEMB) enhanced microbial diversity and abundance, especially during thermophilic phase compared to control group (C). Compost chemical analysis was performed using inductively coupled plasma, atomic emission spectroscopy (ICP-AES) on Perkin Elmer, Optima 8300 (Thermo Fisher Scientific Solutions Co., Ltd. Gwangpyeong-ro, Gangnam-gu, Seoul, Republic of Korea). Heavy metal concentration was used as an indicator of compost quality. Germination index (Gi) at compost concentrations of 25%, 50%, and 75% and global germination index (GI) (the average Gi at 50% and 75%) were calculated (Gariglio et al., 2002; Oktiawan and Zaman, 2018). The treatment groups showed higher germination index compared to control group. In addition, the treatment groups enhanced the population of beneficial microbes in the final compost while suppressing harmful microbial groups. This data is part of the research article (“Metagenomic Analysis Reveals Enhanced Biodiversity and Composting Efficiency of Lignocellulosic Waste by Thermoacidophilic Effective Microorganism (tEM)” (Ajuna et al.)). The data is important for evaluating composting efficiency and quality of the final compost product.
DOI: 10.17632/t8mzkm2ym2.1
title: Dynamic degradation of penconazole and its eventuating effects on antioxidant enzymes and malondialdehyde in apple

description: A file: this data is about the degradation of fungicide penconazole in apple. The residue of penconazole in apple fruits were detected by the UPLC-MS/MS. The initial data showed the area of chromatographic peak. In order to verify validate the developed method, the recovery experiment was conducted and the recovery rates were presented. B file: the activity of SOD and POD, and the content of MDA in apple fruits were detected by the microplate reader. The experimental treatments included spraying penconazole with non-bagging, spraying water as control group with non-bagging, spraying penconazole with bagging, and spraying water as control group with bagging.
DOI: 10.5281/zenodo.4086103
title: Digitized flood location dataset during cyclone Amphan from newspaper survey

description: A dataset of inundation location, digitized and geotagged from newspaper reports during cyclone Amphan over Bengal delta. Description of columns: 1. District: Location name at 2nd administrative level 2. Upazila: Location name at 3rd administrative level 3. Location: Location name 4. Lon: Longitude 5. Lat: Latitude 6. Type: Type of flood - Flood or Inundation 7. Mechanism: Type of flood/inundation mechanism. Breach (Embankment breaching), Hightide (Unembanked low-land), Overtopping (Embankment overflow) 8. Source: Source newspaper name. 9. Date: Corresponding date of the publishing of the news. <strong>Acknowledgement:</strong> CNES (through the TOSCA project BANDINO) and Embassy of France in Bangladesh for financial support. Also support from French research agency (Agence Nationale de la Recherche; ANR) under the DELTA project (ANR-17-CE03-0001).
DOI: 10.6084/m9.figshare.13017665
title: Inferior collicular and lateral lemniscal neurons with bilateral projections to nucleus ovoidalis in the zebra finch, Taeniopygia guttata

description: Data accompanying submission to PeerJ. README.txt describes content of tables.
DOI: 10.6084/m9.figshare.13017665.v1
title: Inferior collicular and lateral lemniscal neurons with bilateral projections to nucleus ovoidalis in the zebra finch, Taeniopygia guttata

description: Data accompanying submission to PeerJ. README.txt describes content of tables.
DOI: 10.21227/w6xt-8y49
title: Sierra Nevada Snow 2001-2019, Validation for SPIReS

description: The files here support the analysis presented in the paper in IEEE Transactions on Geoscience and Remote Sensing, "Snow Property Inversion from Remote Sensing (SPIReS): A Generalized Multispectral Unmixing Approach with Examples from MODIS and Landsat 8 OLI"
DOI: 10.21227/v67a-pc60
title: Sierra Nevada Snow 2001-2019, Validation for SPIReS

description: The files here support the analysis presented in the paper in IEEE Transactions on Geoscience and Remote Sensing, "Snow Property Inversion from Remote Sensing (SPIReS): A Generalized Multispectral Unmixing Approach with Examples from MODIS and Landsat 8 OLI"
DOI: 10.6084/m9.figshare.13085006
title: R0184_20170824a_videos

description: Rat 0184, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.25612/837.gzpjnzx8x02w
title: Sidewalks
title: H-GAC Sidewalks 2018

description: Regional public right of way sidewalk data created using the 2018 H-GAC Aerial Imagery where 6-inch resolution is available.
DOI: 10.5517/ccdc.csd.cc25bmqw
title: CCDC 2006218: Experimental Crystal Structure Determination

description: Related Article: Tamyris T. da Cunha, Vitor M. M. Barbosa, Willian X. C. Oliveira, Emerson F. Pedroso, Diana M. A. García, Wallace C. Nunes, Cynthia L. M. Pereira|2020|Inorg.Chem.|59|12983|doi:10.1021/acs.inorgchem.0c01628
DOI: 10.5517/ccdc.csd.cc25k193
title: CCDC 2012374: Experimental Crystal Structure Determination

description: Related Article: Sebastian Leubner, Viktor E. G. Bengtsson, Kevin Synnatschke, Jonas Gosch, Alexander Koch, Helge Reinsch, Hongyi Xu, Claudia Backes, Xiaodong Zou, Norbert Stock|2020|J.Am.Chem.Soc.|142|15995|doi:10.1021/jacs.0c06978
DOI: 10.5517/ccdc.csd.cc25hqjy
title: CCDC 2011110: Experimental Crystal Structure Determination

description: Related Article: Zili Li, Emily R. R. Mackie, Pria Ramkissoon, Joel C. Mather, Nuchareenat Wiratpruk, Tatiana P. Soares da Costa, Peter J. Barnard|2020|Dalton Trans.|49|12820|doi:10.1039/D0DT02225J
DOI: 10.5517/ccdc.csd.cc25zgk6
title: CCDC 2025278: Experimental Crystal Structure Determination

description: Related Article: S.A. Moggach, B.W. Skelton, D.J. Foster|2020|Acta Crystallogr.,Sect.E:Cryst.Commun.|76|1543|doi:10.1107/S2056989020011603
DOI: 10.5517/ccdc.csd.cc265d0t
title: CCDC 2030965: Experimental Crystal Structure Determination

description: Related Article: Hayden A. Sharma, Katrina M. Mennie, Eugene E. Kwan, Eric N. Jacobsen|2020|J.Am.Chem.Soc.|142|16090|doi:10.1021/jacs.0c08150
DOI: 10.5517/ccdc.csd.cc265d1v
title: CCDC 2030966: Experimental Crystal Structure Determination

description: Related Article: Hayden A. Sharma, Katrina M. Mennie, Eugene E. Kwan, Eric N. Jacobsen|2020|J.Am.Chem.Soc.|142|16090|doi:10.1021/jacs.0c08150
DOI: 10.6073/pasta/c0c3ba2c2dfefc034c33f1d04c9d0f53
title: McMurdo Dry Valleys LTER: Limno run codes, dates, and locations for lake profile data collected in the McMurdo Dry Valleys, Antarctica from 1991 to present

description: This data package provides a summary of "limno runs" performed each season in lakes located throughout the McMurdo Dry Valleys of Antarctica as part of the McMurdo Dry Valleys Long Term Ecological Research program. Each limno run is identified by unique code that allows one to compile a complete set of limnological data from a particular lake and location at specific time points. There are usually two or three limno runs performed per lake per austral summer field season, although the number of runs may vary by lake and by season depending on site access, site conditions, and other external factors.
DOI: 10.5281/zenodo.4086119
title: Updated genome annotation for Physarum polycephalum

description: This dataset contains a genome assembly (previously released by another group) for the slime mold <em>Physarum polycephalum</em>, along with our updated annotation file (see details below). The updated annotation reflects a significant enrichment in U12-type introns in <em>P. polycephalum </em>as described in this preprint: https://doi.org/10.1101/2020.10.12.336362 We downloaded the <em>P. polycephalum</em> genome assembly and annotation from http://www.physarum-blast.ovgu.de/, and RNA-seq for <em>P. polycephalum</em> from NCBI’s SRA database (accession numbers DRR047256, ERR089824-ERR089827, and ERR557103-ERR557120). To reannotate the genome, we combined <em>de novo</em> and reference-based approaches. First, we generated a <em>de novo</em> transcriptome from the aggregate RNA-seq data using Trinity (Grabherr et al. 2011). We also separately mapped the reads to the genome using HISAT2 (Kim et al. 2019), allowing for non-canonical splice sites (--pen-noncansplice 0), followed by StringTie (M. Pertea et al. 2016) to incorporate the mapped reads with the existing annotations and generate additional putative transcript structures. Coding-sequence annotations for the assembled transcripts, informed by additional homology information from the SwissProt (UniProt Consortium 2008) protein database, were generated using TransDecoder (Brian J. Haas et al. 2013), and further refined with the de novo transcriptome via PASA (B. J. Haas 2003). In addition, an AUGUSTUS (Stanke et al. 2008) annotation was generated from the mapped reads using BRAKER1 (Hoff et al. 2015) explicitly allowing for AT-AC splice boundaries (--allow_hinted_splicesites=atac). Lastly, the AUGUSTUS- and StringTie-based gene predictions were merged using gffcompare (G. Pertea and Pertea 2020), and updated again using PASA. To gauge the quality of our annotations versus those previously available, we performed a BUSCO (Simão et al. 2015) analysis against conserved eukaryotic genes; the previous annotations contained matches to 60.1% of eukaryotic BUSCO groups (54.5% single-copy; 27.1% fragmented; 12.8% missing); our annotation increased this percentage to 73.3% (64.4% single-copy; 18.5% fragmented; 8.2% missing).
description: {"references": ["https://doi.org/10.1101/2020.10.12.336362"]}
DOI: 10.5281/zenodo.4086118
title: Updated genome annotation for Physarum polycephalum

description: This dataset contains a genome assembly (previously released by another group) for the slime mold <em>Physarum polycephalum</em>, along with our updated annotation file (see details below). The updated annotation reflects a significant enrichment in U12-type introns in <em>P. polycephalum </em>as described in this preprint: https://doi.org/10.1101/2020.10.12.336362 We downloaded the <em>P. polycephalum</em> genome assembly and annotation from http://www.physarum-blast.ovgu.de/, and RNA-seq for <em>P. polycephalum</em> from NCBI’s SRA database (accession numbers DRR047256, ERR089824-ERR089827, and ERR557103-ERR557120). To reannotate the genome, we combined <em>de novo</em> and reference-based approaches. First, we generated a <em>de novo</em> transcriptome from the aggregate RNA-seq data using Trinity (Grabherr et al. 2011). We also separately mapped the reads to the genome using HISAT2 (Kim et al. 2019), allowing for non-canonical splice sites (--pen-noncansplice 0), followed by StringTie (M. Pertea et al. 2016) to incorporate the mapped reads with the existing annotations and generate additional putative transcript structures. Coding-sequence annotations for the assembled transcripts, informed by additional homology information from the SwissProt (UniProt Consortium 2008) protein database, were generated using TransDecoder (Brian J. Haas et al. 2013), and further refined with the de novo transcriptome via PASA (B. J. Haas 2003). In addition, an AUGUSTUS (Stanke et al. 2008) annotation was generated from the mapped reads using BRAKER1 (Hoff et al. 2015) explicitly allowing for AT-AC splice boundaries (--allow_hinted_splicesites=atac). Lastly, the AUGUSTUS- and StringTie-based gene predictions were merged using gffcompare (G. Pertea and Pertea 2020), and updated again using PASA. To gauge the quality of our annotations versus those previously available, we performed a BUSCO (Simão et al. 2015) analysis against conserved eukaryotic genes; the previous annotations contained matches to 60.1% of eukaryotic BUSCO groups (54.5% single-copy; 27.1% fragmented; 12.8% missing); our annotation increased this percentage to 73.3% (64.4% single-copy; 18.5% fragmented; 8.2% missing).
description: {"references": ["https://doi.org/10.1101/2020.10.12.336362"]}
DOI: 10.6084/m9.figshare.13085006.v1
title: R0184_20170824a_videos

description: Rat 0184, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.5517/ccdc.csd.cc24kbln
title: CCDC 1982871: Experimental Crystal Structure Determination

description: Related Article: Rui-Xue Liu, Chen-Yu Wang, Ying-Shu Wu, Ru-Yi Luo, Xiao-Hong Jiang, Meng-Ting Tang, Yan-Cheng Liu, Zhen-Feng Chen, Hong Liang|2020|J.Inorg.Biochem.|212|111208|doi:10.1016/j.jinorgbio.2020.111208
DOI: 10.5281/zenodo.4086197
title: Países de prioridad asociados a las solicitudes de patente ante la WIPO que vinculen por lo menos a un colombiano

description: Relación de países de prioridad asociados con los registros de solicitudes de patente presentadas ante la OMPI entre los años 2000 y 2019. que incluyen por lo menos a un colombiano como titular
DOI: 10.5281/zenodo.4086196
title: Países de prioridad asociados a las solicitudes de patente ante la WIPO que vinculen por lo menos a un colombiano

description: Relación de países de prioridad asociados con los registros de solicitudes de patente presentadas ante la OMPI entre los años 2000 y 2019. que incluyen por lo menos a un colombiano como titular
DOI: 10.17632/b8k49wd4vb.1
title: Data for: Early Paleozoic granitic rocks of the South Qiangtang Terrane, northern Tibetan Plateau: implications for subduction in the Proto- (Paleo-) Tethys Ocean

description: Appendix 1 Analytical methods Appendix 2 Zircon LA-ICP-MS analyses for granitic rocks from the Gemuri area, Northern Tibet Appendix 3 Analysis results of Hf isotopic compositions of zircons from Ordovician granitic rocks from the Gemuri area, Northern Tibet Appendix 4 Analysis results of Major (wt.%), trace elements (ppm) data for granitic rocks from the Gemuri area, Northern Tibet Appendix 5 Summary of age data for the early Palaeozoic magmatic rocks in the terranes of the Tibetan Plateau and WS Yunnan
DOI: 10.5281/zenodo.3942731
title: Data and scripts for: Intercomparison of atmospheric datasets and PBL schemes for precipitation downscaling over a coastal mountain valley of northern British Columbia, Canada

description: anl_6MYJdiv and anl_6MYNNdiv contains pairwise normalizations of dataset outputs (NAM/ERA5, NAM/NARR and ERA5/NARR) of total rainfall in 2017 for simulations with the MYJ and MYNN3 PBL schemes, that can be plotted by fig3_4.ncl. anl_MYJMYNN_div contains MYJ/MYNN3 spatial contours for each of ERA5, NAM -ANL and NARR outputs. anl_snow_MYJ contains MYJ output for total snow in 2017 by the ERA5, NAM-ANL and NARR datasets, for which values at discrete locations can be retrieved with yr2017snow.ncl, daily_ppt.ncl is script to extract modeled daily precipitation (dly_MYJ and dly_MYNN) from the various locations. Fig_ppt_monthly.R is the plotting script for observed and modeled precipitation time series from hydro31pt1pk.txt. nullwrf is array holder for plotting with ncl scripts. rivs_coasts.shp is shape file that is used in the spatial plots.