cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.974727
title: Geochemical composition of marine surface sediments of the Canadian Arctic

description: Major and trace elements, total organic carbon (TOC), were measured on 141 marine surface and terrestrial sediment samples to study modern sediment dynamics within the Canadian Arctic (CA) and to provide an assessment of metals enrichment for V, Zn, Mn and Fe. Samples were collected from different areas between Baffin Bay and Beaufort Sea during several ArcticNet expeditions (2016-2022) onboard the Canadian Coast Guard icebreaker Amundsen. The ship helicopter was used to access terrestrial sampling sites. The marine sediments were sampled with a box corer (50cm x 50cm x 60cm) and the surface uppermost 1 cm of each box core was sampled. Push cores (10 cm diameter) were taken from each box core collected. Geochemical data were measured with a Malvern PANalytical Epsilon 3-XL energy dispersive X-ray fluorescence spectrometer and TOC was measured with a Carlo-Erba NC 2500 elemental analyzer.
DOI: 10.1594/pangaea.979851
title: Multibeam bathymetry processed data (Atlas Hydrosweep DS 2 echo sounder entire dataset) of RV POLARSTERN during cruise ANT-XXIII/8 (PS69), Southern Ocean

description: Multibeam data were collected during RV Polarstern cruise ANT-XXIII/8 (2006-11-23 to 2007-01-30). Multibeam sonar system was Atlas Hydrographic Hydrosweep DS 2 multibeam echo sounder. Data are processed with Caris HIPS, including sound velocity correction with SV data from CTDs and World Ocean Atlas 18 (https://www.ncei.noaa.gov/archive/accession/NCEI-WOA18), tidal correction with TPXO9_atlas_v5 (https://www.tpxo.net), and manual cleaning. The soundings are combined in daily files, the format is XYZ ASCII ( ). Additional grids have been computed with depth dependent cell size to visualize the data. These grids are not meant for scientific analysis or navigation, but for overview purposes only.
description: These data should not be used for navigational purposes.
DOI: 10.1594/pangaea.982331
title: Multibeam bathymetry processed data (Atlas Hydrosweep DS 2 echo sounder entire dataset) of RV POLARSTERN during cruise ARK-XVII/1 (PS59), Fram Strait, Arctic Ocean

description: Multibeam data were collected during RV Polarstern cruise ARK-XVII/1 (2001-06-19 to 2001-07-29). Multibeam sonar system was Atlas Hydrographic Hydrosweep DS 2 multibeam echo sounder. Data are processed with Caris HIPS, including sound velocity correction by cross fan calibration, tidal correction with TPXO9_atlas_v5 (https://www.tpxo.net), and manual cleaning. The soundings are combined in daily files, the format is XYZ ASCII ( ). Additional grids have been computed with depth dependent cell size to visualize the data. These grids are not meant for scientific analysis or navigation, but for overview purposes only.
description: These data should not be used for navigational purposes.
DOI: 10.1594/pangaea.981084
title: Multibeam bathymetry processed data (Atlas Hydrosweep DS 2 echo sounder entire dataset) of RV POLARSTERN during cruise ARK-XVIII/1 (PS62), Fram Strait, Arctic Ocean

description: Multibeam data were collected during RV Polarstern cruise ARK-XVIII/1 (2002-06-24 to 2002-08-17). Multibeam sonar system was Atlas Hydrographic Hydrosweep DS 2 multibeam echo sounder. Data are processed with Caris HIPS, including sound velocity correction by cross fan calibration, tidal correction with TPXO9_atlas_v5 (https://www.tpxo.net), and manual cleaning. The soundings are combined in daily files, the format is XYZ ASCII ( ). Additional grids have been computed with depth dependent cell size to visualize the data. These grids are not meant for scientific analysis or navigation, but for overview purposes only.
description: These data should not be used for navigational purposes.
DOI: 10.1594/pangaea.981242
title: Multibeam bathymetry processed data (Atlas Hydrosweep DS 2 echo sounder entire dataset) of RV POLARSTERN during cruise ANT-XVIII/1 (PS58), Atlantic Ocean

description: Multibeam data were collected during RV Polarstern cruise ANT-XVIII/1 (2000-09-29 to 2000-10-23). Multibeam sonar system was Atlas Hydrographic Hydrosweep DS 2 multibeam echo sounder. Data are processed with Caris HIPS, including sound velocity correction by cross fan calibration, tidal correction with TPXO9_atlas_v5 (https://www.tpxo.net), and manual cleaning. The soundings are combined in daily files, the format is XYZ ASCII ( ). Additional grids have been computed with depth dependent cell size to visualize the data. These grids are not meant for scientific analysis or navigation, but for overview purposes only.
description: These data should not be used for navigational purposes.
DOI: 10.1594/pangaea.902517
title: Si fluxes from ODP Site 202-1238

description: This dataset has been carefully reviewed and curated in accordance with PANGAEA's exceptionally high quality standards. However, due to discontinued communication from the authors' side, it did not receive the usual formal approval by the authors and therefore lacks final scientific validation.
DOI: 10.1594/pangaea.982330
title: Multibeam bathymetry processed data (Atlas Hydrosweep DS 2 echo sounder entire dataset) of RV POLARSTERN during cruise ANT-XX/2 (PS63), Southern Ocean

description: Multibeam data were collected during RV Polarstern cruise ANT-XX/2 (2002-11-24 to 2003-01-23). Multibeam sonar system was Atlas Hydrographic Hydrosweep DS 2 multibeam echo sounder. Data are processed with Caris HIPS, including sound velocity correction by cross fan calibration, tidal correction with TPXO9_atlas_v5 (https://www.tpxo.net), and manual cleaning. The soundings are combined in daily files, the format is XYZ ASCII ( ). Additional grids have been computed with depth dependent cell size to visualize the data. These grids are not meant for scientific analysis or navigation, but for overview purposes only.
description: These data should not be used for navigational purposes.
DOI: 10.5061/dryad.f4qrfj6tt
title: Data on thermal fertility limits, critical thermal limits and Drosophila distributions

description: Data on Thermal Fertility Limits, Critical Thermal limits and Drosophila
 Distributions
description: See README for usage notes as well as _Dryad tabs within the
 datasets for column descriptions
DOI: 10.1594/pangaea.960587
title: Clay mineralogy from sediment core MD03-2611 (South Australian margin, AUSCAN cruise)

description: The data presents sedimentological data (relative percentages of silt, clay, together with smectite, illite, kaolinite, and chlorite relative percentages) from gravity core MD03-2611. The sedimentological data was obtained by Dr. Franz Gingele and first published in Gingele et al. (2004) but was not yet freely accessible. The 11.97 m long core MD03-2611 was collected during the AUSCAN cruise in 2003 on-board the research vessel Marion Dufresne II (Hill and De Deckker, 2004; https://doi.org/10.17600/3200090). It was retrieved from a small plateau south of Kangaroo Island at 2420 m depth (36°43.80'S, 136°32.90'E) facing the mouth of the Murray River. The datasets cover the last 94 ka and have been used to understand how deep-sea benthic environments respond to changes occurring within surface waters and on land.
DOI: 10.15468/dl.aaf945
title: Occurrence Download

description: A dataset containing 2150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coregonus zenithicus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2150 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002598-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.933345
title: Underway surface O2/Ar, O2 and N2 observations from the Subarctic Northeast Pacific

description: This archive contains underway, surface seawater observations of ΔO2/Ar, oxygen (O2) and nitrogen (N2), and ancillary properties from the Subarctic Northeast Pacific and Gulf of Alaska. These data enable approximations of mixed layer net community production, derived from the biological O2 saturation anomaly (ΔO2/Ar and ΔO2/N2). Gas and hydrographic observations were obtained from a continuous seawater supply using autonomous ship-based instrumentation deployed on periodic Line P and La Perouse oceanographic monitoring cruises, and various other cruises between 2007 and 2019. Measurements of mixed layer ΔO2/Ar, and O2 saturation state and concentration were obtained using a membrane inlet mass spectrometer (MIMS) system and oxygen optode, respectively. Oxygen data were calibrated against discrete samples analyzed by Winkler titration. Mixed layer nitrogen saturation state was derived from observations of seawater gas tension obtained using a gas tension device (GTD) and O2 from the optode. The time and location (latitude and longitude) of underway sampling, and ancillary hydrographic data (sea surface temperature and salinity) measured using a thermosalinograph are also included in the repository. Data are provided and compiled by the Tortell laboratory of the University of British Columbia, Vancouver, Canada. Underway hydrographic data were provided by the Institute of Ocean Sciences (DFO Canada) and are replicated here. A list of publications featuring these data is provided with the repository.
DOI: 10.5061/dryad.fn2z34ts3
title: Supplementary Information for: A cautionary note on the use of genotype callers in phylogenomics

description: Next-generation-sequencing genotype callers are commonly used in studies
 to call variants from newly-sequenced species. However, due to the current
 availability of genomic resources, it is still common practice to use only
 one reference genome for a given genus, or even one reference for an
 entire clade of a higher taxon. The problem with traditional genotype
 callers, such as the one from GATK, is that they are optimized for variant
 calling at the population level. However, when these callers are used at
 the phylogenetic level, the consequences for downstream analyses can be
 substantial. Here, we performed simulations to compare the
 performance between the genotype callers of GATK and ATLAS, and present
 their differences at various phylogenetic scales. We show that
 the genotype caller of GATK substantially underestimates the number of
 variants at the phylogenetic level, but not at the population
 level. We also found that the accuracy of heterozygote calls
 declines with increasing distance to the reference genome. We quantified
 this decline, and found that it is very sharp in GATK, while ATLAS
 maintains a high accuracy even at moderately-divergent species from the
 reference. We further suggest that efforts should be taken
 towards acquiring more reference genomes per species, before pursuing
 high-scale phylogenomic studies.
DOI: 10.1594/pangaea.962525
title: Global marine radiocarbon data compilation for the last deglaciation, zonal averages for each major ocean basin and each deglacial time-slice

description: Compiled marine radiocarbon data from the global ocean, derived from planktonic/benthic foraminifera and corals, spanning the last deglaciation, with associated calendar ages that are independently derived and/or are consistent with the Marine20 radiocarbon calibration curve. The data have been screened and include data flags pertaining to anomalous values (e.g. negative offsets relative to the contemporary atmosphere), low sedimentation rates &lt;2 cm/kyr, and/or deviations from dominant regional-temporal trends. The data are further grouped by ocean basin, and according to their associated calendar ages as belonging to a succession of time slices across the last deglaciation: the Last Glacial Maximum (LGM), Heinrich Stadial 1 (HS1), the Bolling-Allerod (BA), the Younger Dryas, the Early Holocene (7-11ka BP), and the late Holocene (&lt;6 ka BP).
description: netCDF file containing zonal averages for each major ocean basin and each deglacial time-slice.
DOI: 10.1594/pangaea.948334
title: Kinematic observations of the mountain cryosphere using in-situ GNSS instruments 2010-2021

description: This dataset collates data of continuously acquired kinematic observations obtained through in-situ Global Navigation Satellite Systems (GNSS) instruments that have been designed and implemented in a large-scale multi field-site monitoring campaign across the whole Swiss Alps. The landforms covered include rock glaciers, high-alpine steep bedrock bedrock as well as landslide sites, most of which are situated in permafrost areas. The dataset was acquired at 54 different stations situated at locations from 2304 to 4003 meter a.s.l and comprises 229'669 daily positions derived through double-differential GNSS post-processing. Apart from these, the dataset contains down-sampled and cleaned time series of weather station and inclinometer data as well as the full set of GNSS observables in RINEX format. Furthermore the dataset is accompanied by tools for processing and data management in order to facilitate reuse, open alternate usage opportunities and support the life-long living data process with updates.All data contained in this data set including updates to newer data can also be retrieved using the toolset available at https://git.uibk.ac.at/informatik/neslab/public/permasense/permasense_datamgr from the online PermaSense data repository at http://data.permasense.ch.
DOI: 10.5061/dryad.fttdz08r1
title: Data from: Disentangling direct and indirect determinants of the duration of maternal care in brown bears: environmental context matters

description: The duration of maternal care, an important life history trait affecting
 population dynamics, varies greatly within species. Yet, our understanding
 of its predictors is limited, mostly correlative, and subject to
 misinterpretations, due to difficulties to disentangle the role of
 maternal- and offspring-related characteristics. We conducted path
 analysis on a dataset including 217 brown bear litters captured over a
 29-year period in two populations in Sweden (“North” and “South”) facing
 contrasting environmental conditions to identify and quantify the causes
 of variation in the duration of maternal care (1.5 years or 5 years).
description: The data presented in this dataset were collected as part of the
 Scandinavian Brown Bear Research Project, in two study populations of
 brown bears in Sweden: the North and the South. It includes data on the
 duration of maternal care as well as its potential determinants (maternal
 age, maternal mass, maternal parity status, litter size, offspring mass,
 litter sex ratio). This dataset is a cleaned version (e.g. exludes missing
 informations) that was used to conduct the analyses presented in the paper
 Van de Walle et al. 2020 Disentangling direct and indirect determinants of
 the duration of maternal care in brown bears: environmental context
 matters. 
description: There is only some missing information on maternal parity status
 (n=15).
DOI: 10.1594/pangaea.932761
title: Kinematic observations of the mountain cryosphere using in-situ GNSS instruments 2011-2020

description: This dataset collates data of continuously acquired kinematic observations obtained through in-situ Global Navigation Satellite Systems (GNSS) instruments that have been designed and implemented in a large-scale multi field-site monitoring campaign across the whole Swiss Alps. The landforms covered include rock glaciers, high-alpine steep bedrock bedrock as well as landslide sites, most of which are situated in permafrost areas. The dataset was acquired at 54 different stations situated at locations from 2304 to 4003 meter a.s.l and comprises 209'948 daily positions derived through double-differential GNSS post-processing. Apart from these, the dataset contains down-sampled and cleaned time series of weather station and inclinometer data as well as the full set of GNSS observables in RINEX format. Furthermore the dataset is accompanied by tools for processing and data management in order to facilitate reuse, open alternate usage opportunities and support the life-long living data process with updates.
description: All data contained in this data set including updates to newer data can also be retrieved using the toolset available at https://gitlab.ethz.ch/tec/public/permasense/permasense_datamgr from the online PermaSense data repository at http://data.permasense.ch.
DOI: 10.1594/pangaea.962526
title: Global marine radiocarbon data compilation for the last deglaciation, global average estimates derived from spatial interpolations

description: Compiled marine radiocarbon data from the global ocean, derived from planktonic/benthic foraminifera and corals, spanning the last deglaciation, with associated calendar ages that are independently derived and/or are consistent with the Marine20 radiocarbon calibration curve. The data have been screened and include data flags pertaining to anomalous values (e.g. negative offsets relative to the contemporary atmosphere), low sedimentation rates &lt;2 cm/kyr, and/or deviations from dominant regional-temporal trends. The data are further grouped by ocean basin, and according to their associated calendar ages as belonging to a succession of time slices across the last deglaciation: the Last Glacial Maximum (LGM), Heinrich Stadial 1 (HS1), the Bolling-Allerod (BA), the Younger Dryas, the Early Holocene (7-11ka BP), and the late Holocene (&lt;6 ka BP).
description: netCDF file containing zonal averages for each major ocean basin and each deglacial time-slice.
DOI: 10.1594/pangaea.963469
title: Global marine radiocarbon data compilation for the last deglaciation, spline dataset

description: Compiled marine radiocarbon data from the global ocean, derived from planktonic/benthic foraminifera and corals, spanning the last deglaciation, with associated calendar ages that are independently derived and/or are consistent with the Marine20 radiocarbon calibration curve. The data have been screened and include data flags pertaining to anomalous values (e.g. negative offsets relative to the contemporary atmosphere), low sedimentation rates &lt;2 cm/kyr, and/or deviations from dominant regional-temporal trends. The data are further grouped by ocean basin, and according to their associated calendar ages as belonging to a succession of time slices across the last deglaciation: the Last Glacial Maximum (LGM), Heinrich Stadial 1 (HS1), the Bolling-Allerod (BA), the Younger Dryas, the Early Holocene (7-11ka BP), and the late Holocene (&lt;6 ka BP).
description: Excel file with spline dataset
DOI: 10.5061/dryad.z08kprr9z
title: Acute and chronic effects of motorised dental burr assisted thoracic spinal laminectomy on the functionality and welfare of the contusion spinal cord injury rat model

description: This study focused on acute and chronic effects of the recently
 established Dental Burr Assisted (DBA) technique to perform laminectomy at
 T10-T11 vertebral level in a rat model of spinal cord injury (SCI)on
 animal welfare as well as functionality, and compared it to the
 conventional technique. The utility as a model of chronic pain, and the
 effects of SCI on memory was also assessed, using DBA technique and was
 compared to conventional technique of laminectomy. A total of 24 Crl:WI
 female rats were assigned randomly to four equal groups- conventionally
 laminectomised, dental burr assisted laminectomised, conventionally
 laminectomised with spinal cord contusion and dental burr assisted
 laminectomised with spinal cord contusion injuries. In a 56 day long
 study, the animals were tested for bleeding during surgery; Basso Beattie
 and Bresnahan (BBB) score; body weight changes; Rat Grimace Scale (RGS);
 light phase open field activity; dark phase home cage activity; sucrose
 preference as an indicator for hedonistic behaviour; novel object
 recognition to assess short and long term memory during acute and chronic
 stages; mechanical allodynia using von Frey filaments; and detailed
 histopathology of the spinal cord to estimate surviving neuronal number
 and area of vacuoles at the end of the study. The results indicate that
 the analgesia provided during post-operative phase did not affect the
 outcome of the chronic pain model and that, DBA technique can be a
 functional alternative to the conventional technique to achieve better
 welfare without affecting the functionality and research outcome in SCI
 injury studies.
DOI: 10.1594/pangaea.954897
title: Results of the Q-mode principal component (PC) analysis

description: Funding: Response to environmental changes and post-industrial recovery of foraminifera from South Georgia fjords, sub-Antarctic (Award: 2018/31/B/ST10/02886)
DOI: 10.1594/pangaea.846264
title: Benthic and substrate cover data derived from a time series of photo-transect surveys for the Eastern Banks, Moreton Bay Australia in 2004-07
DOI: 10.5061/dryad.bvq83bk6v
title: Data from: Allometric scaling of eDNA production in stream-dwelling brook trout (Salvelinus fontinalis) inferred from population size structure

description: Environmental DNA (eDNA) concentration exhibits a positive correlation
 with organism abundance in nature, but modelling this relationship could
 be substantially improved by incorporating the biology of eDNA production.
 A recent model (Yates et al. 2020) extended models of physiological
 allometric scaling to eDNA production, hypothesizing that brook trout eDNA
 production scales non-linearly with mass as a power-function with scaling
 coefficients &lt; 1 in lakes. To validate this hypothesis, we
 re-analysed data from Wilcox et al. (2016) that examined the correlation
 between eDNA concentration and brook trout abundance in streams. We found
 that allometrically scaled mass (ASM) (e.g. ∑(individual mass0.36) best
 described patterns of eDNA concentration across streams (r2 = 0.43). ASM
 exhibited substantially improved model fit relative to biomass (r2 = 0.31,
 ∆AIC = 5.19), indicating that eDNA production did not scale linearly with
 biomass. However, the explanatory power of ASM was comparable to density
 (r2 = 0.40, ∆AIC = 1.25). Additionally, the optimal scaling coefficient
 estimated from the data (0.36) was substantially lower than that found in
 Yates et al. (2020) (0.72). Discrepancies between datasets could be
 attributable to ecological differences between study habitats (streams vs
 lakes) or due to the exclusion of juveniles (i.e. individuals &lt; 75
 mm) that can be abundant in stream environments. Nevertheless, this study
 adds to the growing body of literature demonstrating that individual eDNA
 production does not scale linearly with biomass.
description: Data originally from Wilcox et al. 2016, and was re-analyzed
 using methods developed in Yates et al. 2020. Summary file contains brook
 trout abundance, eDNA, and habitat data. 'Raw-file-multipass'
 contains data on population/site size structure variation.
 In summary file, variable names refere to:
 'site' = population study site
 'lat' = latitude 'long' =
 longitude 'bkt.pass1',
 'bkt.pass.2', 'bkt.pass.3' = number of fish captured
 during first, second, or third pass (respectively) to catch fish using
 Zippin method 'bkt.cap'  = total number of
 brook trout captured in all passes
 'unstandardized.bkt.estimate' = brook trout census
 estimate not standardized for stream reach length
 'standardized.bkt.estimate' = brook trout census
 estimate standardized for stream reach length
 'bkt.ds.copies.L' = eDNA copies per L detected at
 downstream point of stream reach
 'site.length' = length of stream reach
 'site.width' = width of stream reach
 'discharge.L.sec' = stream discharge in L/sec
 'perc.slope' = gradient of slope for stream
 reach 'SumMassCapturedFish' = total biomass
 of captured fish 'MeanMass' = mean mass of
 fish captured in stream reach 'MeanLength' =
 mean length of fish captured in stream reach