cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.k9c31/84
title: 203_Barker_et_al_2005_D_buzzatii_and_aldrichi_distribution

description: This data set contains collection records for the cactophilic Drosophila aldrichi and Drosophila buzzatii for 97 locations where Opuntia cacti occurred and which were sampled between 1971 and 2002 (Fig. 1). Opuntia species, coordinates and altitude are reported for each location and year and season (W=cool, winter/spring; S=warm, summer/autumn) are given for each collection. When using this data, please cite the original publication:Barker, J S F (2005). Population structure and host-plant specialization in two Scaptodrosophila flower-breeding species. Heredity 94: 129-138
DOI: 10.5061/dryad.k9c31/85
title: 204_Schiffer_&_McEvey_2006_Montium_distribution

description: This data set contains distributions of Australian members of the montium subgroup (Drosophila bunnanda, D. serrata, D. birchii, D. kikkawai and D. sp. Cf. jambulina). Distribution data are available for 122 locations that were sampled between 1924 and 2005 and data are based on records in the literature, collections made by the authors and specimens in the Australian Museum (Figures 16-20). When using this data, please cite the original publication:Schiffer, Michele, and McEvey, Shane F. (2006). Drosophila bunnanda - a new species from northern Australia with notes on other Australian members of the montium subgroup (Diptera: Drosophilidae). Zootaxa : 1-23
DOI: 10.5061/dryad.k9c31/86
title: 6 Griffiths et al. 2005 Stress resistance & wing size

description: This data file contains means and standard errors (SE) of wing centroid size (mm), starvation resistance (LT50 in hours), desiccation resistance (hours to death), heat knockdown time (minutes) and cold recovery time (seconds) of female Drosophila birchii originating from 11 populations collected in 2002 (Table 3, Fig. 2). Note longitudes in data are approximate. When using this data, please cite the original publication:Griffiths, J. A., Schiffer, M., and Hoffmann, A. A. (2005). Clinal variation and laboratory adaptation in the rainforest species Drosophila birchii for stress resistance, wing size, wing shape and development time. Journal of Evolutionary Biology 18: 213-222
DOI: 10.5061/dryad.k9c31/87
title: 7 Hallas et al. 2002 Stress resistance and size

description: This data file contains means and standard deviations (SD) of starvation resistance (time to death in hours), mass (mg) and wing length (mm) for females and males and desiccation resistance (time to death in hours) and cold recovery time (minutes) for females. All traits were measured for 20 Drosophila serrata populations collected in 2000 (Fig. 2-4). Note longitudes in data are approximate. When using this data, please cite the original publication:Hallas, Rebecca, Schiffer, Michele, and Hoffmann, Ary A. (2002). Clinal variation in Drosophila serrata for stress resistance and body size. Genetical Research 79: 141-148
DOI: 10.5061/dryad.k9c31/88
title: 10 Hoffmann et al. 2001 Starvation resistance

description: This data file contains starvation resistance (hours to death) of female and male Drosophila melanogaster of two types of lines (isofemale lines and F1s of a cross between two isofemale lines from the same population) and originating from 18 populations collected in 2000 (Fig. 4). Note longitudes in data are approximate. When using this data, please cite the original publication:Hoffmann, A. A., Hallas, R., Sinclair, C., and Mitrovski, P. (2001). Levels of variation in stress resistance in Drosophila among strains, local populations, and geographic regions: Patterns for desiccation, starvation, cold resistance, and associated traits. Evolution 55: 1621-1630
DOI: 10.5061/dryad.k9c31/89
title: 12_Hoffmann_et_al_2002_Cold_recovery_time

description: This data contains cold recovery time for female Drosophila melanogaster from 83 isofemale lines and originating from 18 populations collected in 1999-2000 (Fig. 1b). Note longitudes in data are approximate. When using this data, please cite the original publication:Hoffmann, Ary A., Anderson, Alisha and Hallas, Rebecca (2002). Opposing clines for high and low temperature resistance in Drosophila melanogaster. Ecology Letters 5: 614-618
DOI: 10.5061/dryad.k9c31/90
title: 13 Hoffmann et al. 2002 Cold resistance survival

description: This data file contains survival (out of 20) after exposure to -2°C for 2 hours for female Drosophila melanogaster originating from eight populations collected in 1999-2000 (Fig. 1c). Note longitudes in data are approximate. When using this data, please cite the original publication:Hoffmann, Ary A., Anderson, Alisha and Hallas, Rebecca (2002). Opposing clines for high and low temperature resistance in Drosophila melanogaster. Ecology Letters 5: 614-618
DOI: 10.5061/dryad.k9c31/91
title: 23_Knibb_et_al_1981_Inversion_frequencies

description: This data file contains frequencies of the In(2L)t, In(2R)NS, In(3L)Payne, In(3R)Payne and the In(3R)C inversion of 12 Drosophila melanogaster populations collected in 1978-1979 (extracted from Table 1). When using this data, please cite the original publication:Knibb, W. R., Oakeshott, J. G. and Gibson, J. B. (1981). Chromosome inversion polymorphism in Drosophila melanogaster. I. Latitudinal clines and associations between inversions in Australasian populations. Genetics 98: 833-847
DOI: 10.5061/dryad.k9c31/92
title: 26 Mitrovski & Hoffmann 2001 Mean overwinter egg counts_and_longevity

description: This data file contains total egg counts, midpoint of egg laying (days), mean egg laying rate per female and day, mean longevity (days) and fitness estimates per field cage held at temperate winter conditions for seven Drosophila melanogaster populations collected in 2000 (Fig. 2). Note longitudes in data are approximate. When using this data, please cite the original publication:Mitrovski, Paul and Hoffmann, Ary A. (2001). Postponed reproduction as an adaptation to winter conditions in Drosophila melanogaster: evidence for clinal variation under semi-natural conditions. Proceedings of the Royal Society of Biological Sciences 268: 2163-2168
DOI: 10.5061/dryad.qh8sh/11
title: wesj-toepads-Q30-QD2-LOW-STRICT.vcf.gz

description: Filtered raw SNP data (i.e., these have been put through VariantFiltration).
DOI: 10.5061/dryad.qh8sh/12
title: Q30-QD2-MISS_0.75.recode.vcf.gz

description: Filtered SNPs that have undergone VariantFiltration and also selection for presence in 75% of individuals genotypes.  SNPs in this file have further been filtered for the presence of informative sites.
DOI: 10.5061/dryad.qh8sh/13
title: Q30-QD2-MISS_0.75.recode.snapp.nexus.gz

description: Filtered SNPs that have undergone VariantFiltration and also selection for presence in 75% of individuals genotypes.  SNPs in this file have further been filtered for the presence of informative sites.  SNPs in this file have been re-formatted for SNAPP, and this file contains data for individuals USNM-144749 and MLZ-59834, which we removed from the data set prior to analysis.
DOI: 10.5061/dryad.qh8sh/14
title: Structure_infile_SNPS_jays.txt.gz

description: Filtered SNPs that have undergone VariantFiltration and also selection for presence in 75% of individuals genotypes. SNPs in this file have further been filtered for the presence of informative sites. Finally, SNPs in this file have been re-formatted for STRUCTURE.
DOI: 10.5061/dryad.qh8sh/15
title: SNAPP_analysis.tar.gz

description: Input files prepared for SNAPP and output files generated by SNAPP.  The WESJ_SNAPP_TIPS_ed.xml input file created for SNAPP *does not* contain data for individuals USNM-144749 and MLZ-59834, which we removed from the data set prior to analysis.
DOI: 10.5061/dryad.qh8sh/16
title: Structure_Results_SNPs_jays.tar.gz

description: Output files generated by STRUCTURE.
DOI: 10.5061/dryad.qh8sh/17
title: toepad-taxa.ProcessingSteps.DRYAD.txt

description: Processing steps we used for analysis of these data.
DOI: 10.5061/dryad.qh8sh/9
title: wesj-toepads-rawSNPS-Q30.vcf.gz

description: Raw SNP calls output by GATK (i.e., not filtered using VariantFiltration).
DOI: 10.5061/dryad.v3m84.1
title: Data from: Tipping the scales: Evolution of the allometric slope independent of average trait size
DOI: 10.5061/dryad.4j8j2/1
title: Morphometric and stable isotope data for ringed seals and beluga whales in the Canadian Arctic

description: Morphometric measurements (age class, sex and standard length) and stable isotope data (C and N) for ringed seals and beluga whales sampled across the Canadian Arctic by Inuit subsistence harvests from 1986-2012. Locations include Resolute, Chesterfield Inlet, Arviat and Pangnirtung, Nunavut, Ulukhaktok, Paulatuk and Hendrickson Island, Northwest Territories, and Saglek Bay, Labrador.
DOI: 10.5061/dryad.4p080/1
title: Diffantom - pkg 1 of 2
DOI: 10.5061/dryad.4p080/2
title: Diffantom - pkg 2 of 2
DOI: 10.5061/dryad.6dn80/1
title: Certner_2015_EcolEvol

description: This MS Excel file contains all the primary data and some partial results.
DOI: 10.5061/dryad.76r80/1
title: Worker Sb discrimination data

description: Worker Sb Discrimination assay scores for SB/SB and SB/Sb queens, with Wilcoxon tests and multiple-comparison correction analyses, yielding data reported in Figure 1 and Figure 2.
DOI: 10.5061/dryad.76r80/2
title: Green beard assay-data summaries

description: Raw data for hexane and methanol Green Beard assays. Genotypes of workers attacking queen surrogate, reference workers, and workers attacking alien ant, yielding genotype proportions reported in Figure 3.
DOI: 10.5061/dryad.7f1j1.1
title: Data from: Comparative limb bone loading in the humerus and femur of the tiger salamander Ambystoma tigrinum: testing the 'mixed-chain' hypothesis for skeletal safety factors
DOI: 10.5061/dryad.7f1j1.2/5.2
title: Ambystoma Bone Load Stress Components Data

description: Data for the components of bone stress from the biomechanical model of bone loading during the terrestrial locomotion of salamanders
DOI: 10.5061/dryad.7f1j1.2/6.2
title: Ambystoma Bone Load Stress Data

description: Bone stress data from the biomechanical model of bone loading during the terrestrial locomotion of salamanders
DOI: 10.5061/dryad.88m82/1
title: Supplementary information F3

description: Parameter effects on male and female body sizes and SSD level (male-to-female body sizes) at the equilibrium in the case that growth rate evolves (Scenario 1).
DOI: 10.5061/dryad.88m82/2
title: Supplementary information F4

description: Parameter effects on male and female body sizes and SSD level (male-to-female body sizes) at the equilibrium in the case that growth duration evolves (Scenario 2).
DOI: 10.5061/dryad.88m82/3
title: Supplementary information F5

description: Literature data on the SSD level in relation to the sexual differences in life history parameters.
DOI: 10.5061/dryad.9432p/22
title: TLR3_TREE SESSION 2015

description: Tree file for the TLR3 phylogeny
DOI: 10.5061/dryad.9432p/23
title: TLR4_new tree session

description: Tree file for the TLR4 phylogeny
DOI: 10.5061/dryad.9432p/24
title: TLR21_new tree session

description: Tree file for the TLR21 phylogeny
DOI: 10.5061/dryad.b54gp/1
title: Subject and Trial Image data

description: Xcel spreadsheet which lists subject’s age, sex, diagnosis and trial. Also listed are the images (along with image complexity value) for each trial associated with a particular xdat value.
DOI: 10.5061/dryad.b54gp/2
title: Y1Files

description: Matlab Struct array of data for subject Y1. Contains raweyedata which is of the form [time pupilrecognition xposition(pix) yposition(pix)] , xdat which is the value associated with the image and trial which gives the trial letter for the given data.
DOI: 10.5061/dryad.b54gp/3
title: Y3Files

description: Matlab Struct array of data for subject Y3. Contains raweyedata which is of the form [time pupilrecognition xposition(pix) yposition(pix)] , xdat which is the value associated with the image and trial which gives the trial letter for the given data.
DOI: 10.5061/dryad.b54gp/4
title: Y6Files

description: Matlab Struct array of data for subject Y6. Contains raweyedata which is of the form [time pupilrecognition xposition(pix) yposition(pix)] , xdat which is the value associated with the image and trial which gives the trial letter for the given data.
DOI: 10.5061/dryad.b54gp/5
title: Y7Files

description: Matlab Struct array of data for subject Y7. Contains raweyedata which is of the form [time pupilrecognition xposition(pix) yposition(pix)] , xdat which is the value associated with the image and trial which gives the trial letter for the given data.
DOI: 10.5061/dryad.b54gp/6
title: Y8Files

description: Matlab Struct array of data for subject Y8. Contains raweyedata which is of the form [time pupilrecognition xposition(pix) yposition(pix)] , xdat which is the value associated with the image and trial which gives the trial letter for the given data.
DOI: 10.5061/dryad.bp7j7/1
title: Total distance flown by individual adult Helicoverpa armigera on the flight mills

description: Flight mill data used in all figures and REML analyses. This data is used in Fig1B, Fig1C and FigS2. Column headings and data are as follows:- ID = the flight mill channel (A or B), year flown ('13' represents 2013), date flown (e.g. Nov13 = November 13th) and mill flown (e.g. _Ch7 = mill #7). origin = origin of the insect population. sex = male (m) or female (f). Total distance flown = the total distance (metres) each individual flew on the flight mill during the course of a single night as recorded by the tethered flight mill.
DOI: 10.5061/dryad.bp7j7/2
title: RNAseq read count data from China Helicoverpa armigera

description: The data is a matrix of read counts generated from an RNAseq analysis of six samples of H. armigera. Each RNA sample was extracted from a pool of three whole individual insects. The first column contains the gene identification number. All other column headings represent the individual samples. AY = insects from Anyang. DF = insects from Dafeng. The data was used to determine differential gene expression using the open software packages edgeR and DEseq2.
DOI: 10.5061/dryad.bp7j7/3
title: RNAseq read count data from Greek Helicoverpa armigera

description: The data is a matrix of read counts generated from an RNAseq analysis of six samples of H. armigera from Greece. Each RNA sample was extracted from a pool of three whole individual insects. The first column contains the gene identification number. All other column headings represent the individual samples. GR_S = short-distance flying insects from Northern Greece. GR_L = long-distance flying insects from Northern Greece. The data was used to determine differential gene expression using the open software packages edgeR and DEseq2.
DOI: 10.5061/dryad.bp7j7/4
title: RNA-seq analysis of flight phenotypes of H. armigera - DEseq2 full output

description: Output from R package DEseq2 for China and Greece H. armigera RNAseq experiments analysing differential expression between flight phenotypes. Gene ID = gene identification number. baseMean = average of the normalised count values. log2FoldChange = estimated log fold change between sample groups (for China the estimate is measured against AY; for Greece the estimate is measured against GR_S). lfcSE = standard error estimate for logFC. p-value = evidence for an effect of treatment on expression. padj = multiple testing correction for p-value. 'NA' in the p-value or padj column indicates that the gene was excluded from the analysis due to no count data or an extreme outlier.
DOI: 10.5061/dryad.bp7j7/5
title: RNAseq analysis of H. armigera flight phenotypes - edgeR_full_output

description: Output from R package edgeR for China and Greece H. armigera RNAseq experiments analysing differential expression between flight phenotypes. Gene ID = gene identification number. logFC = estimated log fold change between sample groups (for China the estimate is measured against AY; for Greece the estimate is measured against GR_S). logCPM = log2 counts per million. p-value = evidence for an effect of treatment on expression. FDR = multiple testing correction for p-value. Note that the number of rows do not equate to the number of total estimated genes (17001). This is because data with less than 5 read counts across all samples are removed from the analysis.
DOI: 10.5061/dryad.bp7j7/6
title: Identified GO terms for Helicoverpa armigera genes

description: The file provides a list of GO-terms used in a functional enrichment analysis for genes involved in flight activity in Helicoverpa armigera. The list was generated using BLAST-2-GO. A total of 11316 genes (from a total of 17001) have identified GO-terms.
DOI: 10.5061/dryad.bp7j7/7
title: Raw qPCR data for RNA-seq validation

description: Data file consists of two excel sheets. The first sheet labelled 'ct' contains all raw Ct values that informed the qPCR analysis. Column headings are gene IDs for that particular gene. Information on qPCR primers and efficiency can be found in the Supplementary information. 'Treatment' = phenotype tested. 'Biorep' = biological replicate. 'Techrep' = technical replicate. The second sheet ('validation') contains the fold-change comparisons that informed the RNA-seq validation analysis. Validations were performed for each software package - edgeR and DEseq2. Comparisons were made only in instances when the gene was significantly differentially expressed in the RNA-seq.
DOI: 10.5061/dryad.cv8cr/10
title: Readmap linking trimmed reads and samples for Spider data2

description: The readmap shows read count for each sample. The readmap is constructed using USEARCH software.
DOI: 10.5061/dryad.cv8cr/11
title: Command pipeline used for bioinformatics for Spider data2

description: The file contains all the commands used in this study to generate the final data. The bioinformatics was carried out at servers on CSC - IT Center for SCience in Finland .
DOI: 10.5061/dryad.cv8cr/6
title: Command pipeline used for bioinformatics

description: The file contains all the commandds used in this study to generate the final data. The bioinformatics was carried out at servers on CSC - IT Center for SCience in Finland .
DOI: 10.5061/dryad.cv8cr/7
title: The final readmap

description: This readmap contains the final read counts for each sample. The difference to raw readmap is that some OTU's in this version have been clumped together. The information in this sheet was used as presense/absence data in the study.
DOI: 10.5061/dryad.cv8cr/8
title: Q20 reads from Spider samples for Spider data2

description: Collected from the field. DNA extracted from half individuals. Sequenced using 454 pyrosequencing.
DOI: 10.5061/dryad.cv8cr/9
title: OTU sequences for Spider data2

description: Clustered to OTUs using USEARCH algorithm with default (97%) similarity. This way there is a little bit of oversplitting, and OTUs belonging to same biological species are clustered subsequently.
DOI: 10.5061/dryad.d58b8/17
title: 148BT_R1

description: First read pairs for Sample 148 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/18
title: 148BT_R2

description: Second read pairs for Sample 148 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/19
title: 163AT_R1

description: First read pairs for Sample 163 AT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/20
title: 163AT_R2

description: Second read pairs for Sample 163 AT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/21
title: 163REL_R1

description: First read pairs for Sample 163 AT-RE, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/22
title: 163REL_R2

description: Second read pairs for Sample 163 AT-RE, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/23
title: 340AT_R1

description: First read pairs for Sample 340 AT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/24
title: 340AT_R2

description: Second read pairs for Sample 340 AT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/25
title: 346AT_R1

description: First read pairs for Sample 346 AT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.fm36k/1
title: Chick growth data from NLME analysis

description: This file contains data used in the NLME analysis, including 4999 mass measurements across the 313 common tern chicks studied at two sitesin four years.
DOI: 10.5061/dryad.g15k7/1
title: 20Q Behavioral Data and Analysis Script

description: Raw and processed data for the "20 Question" Brain-to-brain experiment. Contains the data, the analysis script, and additional figures.
DOI: 10.5061/dryad.hf0rm/10
title: NASTRAN file of coastal moa (Euryapteryx curtus) skull

description: This zip file contains NASTRAN files (.nas) of the final cranium and mandible volume mesh used to create the finite element model of the coastal moa (Euryapteryx curtus) specimen NMNZ S30212 analysed in the paper.
DOI: 10.5061/dryad.hf0rm/11
title: NASTRAN file of crested moa (Pachyornis australis) skull

description: This zip file contains NASTRAN files (.nas) of the final cranium and mandible volume mesh used to create the finite element model of the crested moa (Pachyornis australis) specimen NMNZ S27896 analysed in the paper.
DOI: 10.5061/dryad.hf0rm/3
title: Virtual 3D PDF of coastal moa (Euryapteryx curtus) skull

description: This zip file contains a virtual 3D skull (based on surface mesh of finite element model) of the coastal moa (Euryapteryx curtus) specimen NMNZ S30212 analysed in the paper. This file is in PDF format (.pdf) and can be viewed for free using the most recent version of adobe reader. Additional formats are available upon request to the author.
DOI: 10.5061/dryad.hf0rm/4
title: Virtual 3D PDF of crested moa (Pachyornis australis) skull

description: This zip file contains a virtual 3D skull (based on surface mesh of finite element model) of the crested moa (Pachyornis australis) specimen NMNZ S27896 analysed in the paper. This file is in PDF format (.pdf) and can be viewed for free using the most recent version of adobe reader. Additional formats are available upon request to the author.
DOI: 10.5061/dryad.hf0rm/5
title: Virtual 3D PDF South Island giant moa (Dinornis robustus) skull

description: This zip file contains a virtual 3D skull (based on surface mesh of finite element model) of the South Island giant moa (Dinornis robustus) specimen NMNZ S28225 analysed in the paper. This file is in PDF format (.pdf) and can be viewed for free using the most recent version of adobe reader. Additional formats are available upon request to the author.
DOI: 10.5061/dryad.hf0rm/6
title: Virtual 3D PDF of little bush moa (Anomalopteryx didiformis) skull

description: This zip file contains a virtual 3D skull (based on surface mesh of finite element model) of the little bush moa (Anomalopteryx didiformis) specimen NMNZ S35274 analysed in the paper. This file is in PDF format (.pdf) and can be viewed for free using the most recent version of adobe reader. Additional formats are available upon request to the author.
DOI: 10.5061/dryad.hf0rm/7
title: Virtual 3D PDF of upland moa (Megalapteryx didinus) skull

description: This zip file contains a virtual 3D skull (based on surface mesh of finite element model) of the upland moa (Megalapteryx didinus) specimen NMNZ S28206 analysed in the paper. This file is in PDF format (.pdf) and can be viewed for free using the most recent version of adobe reader. Additional formats are available upon request to the author.
DOI: 10.5061/dryad.hf0rm/8
title: NASTRAN file of southern cassowary (Casuarius casuarius) skull

description: This zip file contains NASTRAN files (.nas) of the final cranium and mandible volume mesh used to create the finite element model of the southern cassowary (Casuarius casuarius) specimen CMAv14294 analysed in the paper.
DOI: 10.5061/dryad.hf0rm/9
title: NASTRAN file of emu (Dromaius novaehollandiae) skull

description: This zip file contains NASTRAN files (.nas) of the final cranium and mandible volume mesh used to create the finite element model of the emu (Dromaius novaehollandiae) specimen SAM B6863 analysed in the paper.