cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.e5qa77
title: Occurrence Download

description: A dataset containing 1748 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 1748 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084248-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dt539d
title: Occurrence Download

description: A dataset containing 899 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Evaluación del riesgo de extinción de setenta y tres especies de lagartijas (Sauria) incluidas en la Norma Oficial Mexicana-059-SEMARNAT-2001"
 ]
}

 The dataset includes 899 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153156-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hdefay
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nectophrynoides pseudotornieri Menegon, Salvidio & Loader, 2004"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0347049-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sr9ven
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eulemur collaris (É.Geoffroy Saint-Hilaire, 1812)"
 ]
}

 The dataset includes 108 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0343871-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93k688
title: Occurrence Download

description: A dataset containing 320 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ochotona thibetana (A.Milne-Edwards, 1871)"
 ]
}

 The dataset includes 320 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045871-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gzhu9x
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allocebus trichotis (Günther, 1875)"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0339581-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.secvw2
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ammodorcas clarkei (Thomas, 1891)"
 ]
}

 The dataset includes 74 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028100-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nyt22p
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinoptera javanica Müller & Henle, 1841"
 ]
}

 The dataset includes 114 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0348802-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vtkcfy
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brookesia dentata Mocquard, 1900"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0342532-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ze8z5k
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abies nebrodensis (Lojac.) Mattei",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 43 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0285484-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zmw6tj
title: Occurrence Download

description: A dataset containing 1048 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pyracantha M.Roem."
 ]
}

 The dataset includes 1048 records from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084249-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n8z7w8
title: Occurrence Download

description: A dataset containing 304 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Circus macrosceles A.Newton, 1863"
 ]
}

 The dataset includes 304 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028163-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.smyh82
title: Occurrence Download

description: A dataset containing 270417 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Papaver rhoeas L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 270417 records from 1003 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0263091-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uek5gt
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fungia seychellensis Hoeksema, 1993"
 ]
}

 The dataset includes 34 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0343912-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xwgz4e
title: Occurrence Download

description: A dataset containing 689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Lophocebus albigena (Gray, 1850)"
 ]
}

 The dataset includes 689 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0346467-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zs7xn4
title: Occurrence Download

description: A dataset containing 17683 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apium graveolens L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 17683 records from 347 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256538-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6096/7001
title: AEROCLO-sA PEGASUS aerosol particle carbonaceous composition in the TSP fraction

description: The AEROCLO-sA field campaign took place from 21 August to 13 September 2017 at the Sam Nujoma Marine and Coastal Resources Research Centre (SANUMARC) of the University of Namibia at Henties Bay (Formenti et al., 2019). This sampling site, operated on the long-term as described by Formenti et al. (2018) and Klopper et al. (2020). 
During the campaign, aerosol samples in the total suspended particulate (TSP). were collected both during day (approximately 07:00-17:00 UTC) and night time (approximately 17:30-06:30 UTC). The sampling duration was marginally adapted in real-time to the nature and the aerosol load of air masses using the readings of the local wind speed and direction and of the aerosol mass concentration, also measured online. Air sampling was performed from the PortablE Gas and Aerosol Sampling UnitS (PEGASUS; https://pegasus.aeris-data.fr/) facility with two high-volume aerosol inlets delivering approximately 450 L min-1 each. At wind speeds between 5 to 10 m s 1, typical for coastal Namibia, sampling is almost isokinetic for particles up to 40 µm in aerodynamic diameter (Rajot et al., 2008). The total sampled flow rate was distributed to various instruments, including a custom-made filter holder loaded with a quartz filter (Pall, 2500QAT-UP Tissuquartz, 47-mm filter diameter) operated at an average sampling flow rate of the order of 30 L min-1. Before the campaign, quartz membranes were baked at 550°C for 12 hours. Both were conditioned in pre-baked aluminium foils. Immediately after exposure, all samples were sealed and stored at -18°C in the deep-freezer available in the PEGASUS facility, from which they were transported back to the laboratory.
In total, 36 TSP filter samples (including blanks) were collected between 21 August and 12 September 2017. 
Organic carbon (OC) and elemental carbon (EC) were measured using a thermo-optical carbon analyser (Sunset Laboratory Inc.) on a 1.5 cm2 filter following the EUSSAR-II protocol (Cavalli et al., 2010). The Sunset analyzer was calibrated using a sucrose solution (purity > 99.5 %) in the concentration range between 0.42 µg cm-2 and 40 µg cm-2. The limit of quantification for total carbon and organic carbon is henceforth estimated to be equal to 0.42 µg cm-2. An instrumental blank and a control point with a sucrose solution at 10 µg cm-2 were done at the beginning of each day of analysis. OC and EC concentrations are automatically calculated with the software OCBC835 (Sunset Laboratory). The optical split point was manually verified to ensure their assignment.
DOI: 10.15468/dl.nzfury
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Panthera leo krugeri"
 ]
}

 The dataset includes 40 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032662-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pbe8ge
title: Occurrence Download

description: A dataset containing 272 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hordeum parodii"
 ]
}

 The dataset includes 272 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032663-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29625421
title: Exploring the comorbidity mechanisms of ITGB2 in rheumatoid arthritis and membranous nephropathy through integrated bioinformatics analysis

description: Patients with rheumatoid arthritis (RA) are more likely to comorbid renal diseases, with membranous nephropathy (MN) being the most common. This study aimed to explore the common pathogenesis between RA and MN using integrated bioinformatics analysis. Bulk and single-cell RNA sequencing datasets were obtained from the Gene Expression Omnibus and ImmPort databases. Differential expressed genes (DEGs) were identified and enrichment analysis was performed. Topology analysis and the random forest algorithm were applied to identify hub genes. The single-sample Gene Set Enrichment Analysis method was used to assess immune infiltration. Single-cell RNA sequencing analysis was employed to compare the transcript levels of key gene across different cell types. Pseudotime analysis was conducted using Monocle3, and cellular communication was analyzed with CellChat. The L1000FWD database was used to identify potential drugs, and molecular docking was performed. 66 common upregulated DEGs were identified, primarily associated with leukocyte migration and the chemokine signaling pathway. ITGB2 was finally identified as the shared pathogenic gene of both RA and MN. ITGB2 was predominantly expressed in macrophages, and its expression increased as M0 macrophages differentiated into M1 macrophages. BAFF signaling between macrophages with high ITGB2 expression and B cells/plasma cells was enhanced. Small molecules targeting ITGB2, including LY-294002 and CP466722, may serve as potential drugs for both RA and MN. As the pathogenic gene shared by both RA and MN, ITGB2 may play a role in M1 macrophage polarization and contribute to the maturation and differentiation of B cells through BAFF signaling.
DOI: 10.6084/m9.figshare.29625421.v1
title: Exploring the comorbidity mechanisms of ITGB2 in rheumatoid arthritis and membranous nephropathy through integrated bioinformatics analysis

description: Patients with rheumatoid arthritis (RA) are more likely to comorbid renal diseases, with membranous nephropathy (MN) being the most common. This study aimed to explore the common pathogenesis between RA and MN using integrated bioinformatics analysis. Bulk and single-cell RNA sequencing datasets were obtained from the Gene Expression Omnibus and ImmPort databases. Differential expressed genes (DEGs) were identified and enrichment analysis was performed. Topology analysis and the random forest algorithm were applied to identify hub genes. The single-sample Gene Set Enrichment Analysis method was used to assess immune infiltration. Single-cell RNA sequencing analysis was employed to compare the transcript levels of key gene across different cell types. Pseudotime analysis was conducted using Monocle3, and cellular communication was analyzed with CellChat. The L1000FWD database was used to identify potential drugs, and molecular docking was performed. 66 common upregulated DEGs were identified, primarily associated with leukocyte migration and the chemokine signaling pathway. ITGB2 was finally identified as the shared pathogenic gene of both RA and MN. ITGB2 was predominantly expressed in macrophages, and its expression increased as M0 macrophages differentiated into M1 macrophages. BAFF signaling between macrophages with high ITGB2 expression and B cells/plasma cells was enhanced. Small molecules targeting ITGB2, including LY-294002 and CP466722, may serve as potential drugs for both RA and MN. As the pathogenic gene shared by both RA and MN, ITGB2 may play a role in M1 macrophage polarization and contribute to the maturation and differentiation of B cells through BAFF signaling.
DOI: 10.6084/m9.figshare.29625422
title: Creating synergy between established histology methods and newer spatial analysis modalities using fresh frozen tissues

description: Formalin-fixed paraffin embedded tissues are a mainstay in contemporary histology and pathology practice and represent the most readily available and widely used sample format that has guided early studies and set standards for a new field of spatial biology. However, fixed tissues are not always suitable for all molecular applications and detection of certain molecular targets can be suppressed by these practices. There is a greater diversity of analysis techniques that are commercially available to researchers today, and pathologists and core services are now engaging with groups that prefer fresh-frozen samples more than ever before. Some of these analysis techniques can be characterized as ‘label-free’ and access unique classes of molecular targets in situ. Our team has developed tools and procedures to facilitate a synergy between the realm of label-free spatial biology and the histology laboratory for biomedical discovery programs. Herein, we discuss the development of 3D printed cassette holders for use in a variety of commercially available cryostats. This apparatus was tested using fresh frozen tissue slices embedded in hydroxypropyl methylcellulose polyvinylpyrrolidone for subsequent analyses. Based on our tests, we propose this protocol as an option to better preserve sample history during the lifetime of a specimen and curtail the decomposition of any lower abundance endogenous chemical moieties for spatial ‘omics’ analysis using mass spectrometry.
DOI: 10.6084/m9.figshare.29625422.v1
title: Creating synergy between established histology methods and newer spatial analysis modalities using fresh frozen tissues

description: Formalin-fixed paraffin embedded tissues are a mainstay in contemporary histology and pathology practice and represent the most readily available and widely used sample format that has guided early studies and set standards for a new field of spatial biology. However, fixed tissues are not always suitable for all molecular applications and detection of certain molecular targets can be suppressed by these practices. There is a greater diversity of analysis techniques that are commercially available to researchers today, and pathologists and core services are now engaging with groups that prefer fresh-frozen samples more than ever before. Some of these analysis techniques can be characterized as ‘label-free’ and access unique classes of molecular targets in situ. Our team has developed tools and procedures to facilitate a synergy between the realm of label-free spatial biology and the histology laboratory for biomedical discovery programs. Herein, we discuss the development of 3D printed cassette holders for use in a variety of commercially available cryostats. This apparatus was tested using fresh frozen tissue slices embedded in hydroxypropyl methylcellulose polyvinylpyrrolidone for subsequent analyses. Based on our tests, we propose this protocol as an option to better preserve sample history during the lifetime of a specimen and curtail the decomposition of any lower abundance endogenous chemical moieties for spatial ‘omics’ analysis using mass spectrometry.
DOI: 10.6084/m9.figshare.29485238.v1
title: MapMender

description: The test results of MapMender.
DOI: 10.15468/dl.kk45z7
title: Occurrence Download

description: A dataset containing 709 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aciphylla scott-thomsonii"
 ]
}

 The dataset includes 709 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032664-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vg826d
title: Occurrence Download

description: A dataset containing 259763 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Ulmus glabra"
 ]
}

 The dataset includes 259763 records from 970 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032558-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aezj78
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amaranthus albus",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 249 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032666-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18167/dvn1/zkjbmk
title: Modelled and observed Aedes albopictus mosquito population dynamics during a SIT field trial, Mauritius, 2017-2019

description: The prevention of diseases caused by Aedes-borne pathogens, such as dengue, chikungunya and Zika viruses, relies on mosquito control. An innovative method adapted for Aedes albopictus mosquitoes is the Sterile Insect Technique (SIT) that consists in the mass-release of sterilized mosquito males. The impact of SIT and the optimization of release strategies can be studied from modelling. This dataset includes entomological collected on the field during an SIT trial in Mauritius, 2017-2019, as well as modelled mosquito population dynamics, obtained from simulations using ARBOCARTO tool, for the same period. To cite this dataset: Iyaloo, D., Haramboure, M., Elahee, K.B., Marti, R., Castets, M., Degenne, P., Bouyer, J., Baldet, T., Tran, A. 2025. Modelled and observed Aedes albopictus mosquito population dynamics during a SIT field trial, Mauritius, 2017-2019. https://doi.org/10.18167/DVN1/ZKJBMK, CIRAD Dataverse, V1.
DOI: 10.15468/dl.pg6w47
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eleusine indica",
 "Country is Saint Vincent and the Grenadines",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032668-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s86rru
title: Occurrence Download

description: A dataset containing 24761 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carcharhinus falciformis"
 ]
}

 The dataset includes 24761 records from 169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032665-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s84apc
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is 500,000 plant Specimens from PE Herbarium in China from 1950 to 1999",
 "TaxonKey is Liriodendron chinense"
 ]
}

 The dataset includes 68 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032667-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfw4ax
title: Occurrence Download

description: A dataset containing 373714 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Asia, Europe)",
 "TaxonKey is Petasites"
 ]
}

 The dataset includes 373714 records from 1174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032633-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15249734
title: 20250419_Noel_LA_Santa_Monica_data
DOI: 10.5281/zenodo.15249735
title: 20250419_Noel_LA_Santa_Monica_data