cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2hj8cp
title: CCDC 2309542: Experimental Crystal Structure Determination

description: Related Article: Jinting Zhu, Linhan Fan, Wenqing Li, Xinru Qi, Changyan Sun, Wenjun Li, Zhidong Chang|2024|J.Photochem.Photobiol.A:Chem.|452|115583|doi:10.1016/j.jphotochem.2024.115583
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25955/25478659
title: Researcher Skills Development Needs Survey 2023 de-identified dataset

description: Federation University Australia Library conducted a survey of researchers, including Higher Degree by Research candidates, at the University during mid-2023 to obtain data on researcher requirements related to digital skills development. This Collection draws together the Survey instrument, the Report, two Infographics presenting some of the responses to the survey as well as a comparison with some of the responses from the 2020 survey, and the de-identified Excel dataset of survey responses.
DOI: 10.25955/25478659.v1
title: Researcher Skills Development Needs Survey 2023 de-identified dataset

description: Federation University Australia Library conducted a survey of researchers, including Higher Degree by Research candidates, at the University during mid-2023 to obtain data on researcher requirements related to digital skills development. This Collection draws together the Survey instrument, the Report, two Infographics presenting some of the responses to the survey as well as a comparison with some of the responses from the 2020 survey, and the de-identified Excel dataset of survey responses.
DOI: 10.6084/m9.figshare.25478695
title: <b>Mangiferin regulates lipogenesis mediated by Advanced Glycation End products through AKR1B1</b>

description: Analysis of transcriptome profiles of DPN patients available in SRA-NCBI database and genes annotated for DPN onset further confirmed the novel property of AKR1B1 in regulation of lipogenesis in DPN patients.
DOI: 10.6084/m9.figshare.25478716.v1
title: Supplementary Material for: A study of pupil response to light as a digital biomarker of recent cannabis use

description: Introduction: Given the roadside safety and occupational injury prevention implications associated with cannabis impairment, there is a need for objective and validated measures of recent cannabis use. Pupillary light response may offer an approach for detection. 
Method: 84 participants (mean age: 32, 42% female) with daily, occasional, and no-use cannabis use histories participated in pupillary light response tests before and after smoking cannabis ad libitum or relaxing for 15 minutes (no use). The impact of recent cannabis consumption on trajectories of the pupillary light response was modeled using functional data analysis tools. Logistic regression models for detecting recent cannabis use were compared, and average pupil trajectories across cannabis use groups and times since light test administration were estimated. 
Results: Models revealed small, significant differences in pupil response to light after cannabis use comparing the occasional use group to the no use control group, and similar statistically significant differences in pupil response patterns comparing the daily use group to the no use comparison group. Trajectories of pupillary light response estimated using functional data analysis found that acute cannabis smoking was associated with less initial and sustained pupil constriction compared to no cannabis smoking.
Conclusion: These analyses show the promise of pairing pupillary light response and functional data analysis methods to assess recent cannabis use.
DOI: 10.5281/zenodo.10586384
title: Linked collectors and determiners for: Botanical Museum, Copenhagen. Database of type specimens.

description: Natural history specimen data linked to collectors and determiners held within, "Botanical Museum, Copenhagen. Database of type specimens". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/84d3829c-f762-11e1-a439-00145eb45e9a using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/84d3829c-f762-11e1-a439-00145eb45e9a. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10586385
title: Linked collectors and determiners for: Botanical Museum, Copenhagen. Database of type specimens.

description: Natural history specimen data linked to collectors and determiners held within, "Botanical Museum, Copenhagen. Database of type specimens". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/84d3829c-f762-11e1-a439-00145eb45e9a using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/84d3829c-f762-11e1-a439-00145eb45e9a. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10706505
title: Linked collectors and determiners for: Botanical Museum, Copenhagen. Database of type specimens.

description: Natural history specimen data linked to collectors and determiners held within, "Botanical Museum, Copenhagen. Database of type specimens". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/84d3829c-f762-11e1-a439-00145eb45e9a using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/84d3829c-f762-11e1-a439-00145eb45e9a. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10873722
title: Linked collectors and determiners for: Botanical Museum, Copenhagen. Database of type specimens.

description: Natural history specimen data linked to collectors and determiners held within, "Botanical Museum, Copenhagen. Database of type specimens". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/84d3829c-f762-11e1-a439-00145eb45e9a using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/84d3829c-f762-11e1-a439-00145eb45e9a. Formatted as a Frictionless Data package.
DOI: 10.58032/agh/ya0jlo
title: Synthesis, Characterization, and NH3-SCR Catalytic Performance of Fe-Modified MCM-36 Intercalated with Various Pillars - research data

description: Research data on which the article was based Molecules 2023, 28, 4960.
DOI: 10.6084/m9.figshare.25478656
title: Supplementary data

description: Analysis of transcriptome profiles of DPN patients available in SRA-NCBI database and genes annotated for DPN onset further confirmed the novel property of AKR1B1 in regulation of lipogenesis in DPN patients.
DOI: 10.6084/m9.figshare.25478656.v1
title: Supplementary data

description: Analysis of transcriptome profiles of DPN patients available in SRA-NCBI database and genes annotated for DPN onset further confirmed the novel property of AKR1B1 in regulation of lipogenesis in DPN patients.
DOI: 10.25345/c56m33f56
title: MassIVE MSV000094404 - In-depth analysis of molecular network based on liquid chromatography coupled with tandem mass spectrometry in natural products: importance of redundant nodes discovery
title: This dataset is used for the research work entitled "In-depth analysis of molecular network based on liquid chromatography coupled with tandem mass spectrometry in natural products: importance of redundant nodes discovery". It mainly consists of two parts: Discovery of redundant nodes and Reasons of redundant nodes. The Discovery of redundant nodes section includes MS/MS data of five different natural products with distinct compound structures, namely Ginseng Radix et Rhizoma (GR): GR-neg, Epimedii Folium (EF): EF-neg, Salviae Miltiorrhizae Radix et Rhizoma (SM): SM-neg, Bufonis Venenum (BV): BV-pos, and Aconiti Lateralis Radix Praeparata (AL): AL-pos. The Reasons of redundant nodes section includes MS/MS data of GR and EF at different sample concentrations, as well as BV at different mass spectrometry parameters, such as 1-fold, 2-fold, and 10-fold dilution of GR samples (GR-1x dilution, GR-2x dilution, GR-10x dilution), 1-fold, 2-fold, and 10-fold dilution of EF samples (EF-1x dilution, EF-2x dilution, and EF-10x dilution), BV at different capillary voltages (BV-capillary-1500V-(1-6), BV-capillary-1750V-(1-6), BV-capillary-2000V-(1-6), BV-capillary-2250V-(1-6), and BV-capillary-2500V-(1-6)), BV at different sample cone voltages (BV-SC-10V-(1-6), BV-SC-20V-(1-6), BV-SC-30V-(1-6), BV-SC-40V-(1-6), and BV-SC-50V-(1-6)), and BV at different desolvation temperatures (BV-DT-300-(1-6), BV-DT-400-(1-6), and BV-DT-500-(1-6)).
DOI: 10.34740/kaggle/dsv/7944035
title: Contrastive Language Image Pretraining by openai
DOI: 10.6084/m9.figshare.25478850
title: Additional file 1 of Chloroplast genome of Calamus tetradactylus revealed rattan phylogeny

description: Supplementary material 1.
DOI: 10.6084/m9.figshare.25478850.v1
title: Additional file 1 of Chloroplast genome of Calamus tetradactylus revealed rattan phylogeny

description: Supplementary material 1.
DOI: 10.6084/m9.figshare.25478772
title: Additional file 1 of Mendelian randomization analysis reveals causal relationship between obstetric-related diseases and COVID-19

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.25478772.v1
title: Additional file 1 of Mendelian randomization analysis reveals causal relationship between obstetric-related diseases and COVID-19

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.25478827
title: Additional file 1 of The Function of SD1 on Shoot Length and its Pyramiding Effect on Shoot Length and Plant Height in Rice (Oryza sativa L.)

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.25478827.v1
title: Additional file 1 of The Function of SD1 on Shoot Length and its Pyramiding Effect on Shoot Length and Plant Height in Rice (Oryza sativa L.)

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.25479145.v1
title: Supplementary Material for: Drug Target Mendelian Randomization Study of PCSK9 and HMG-CoA Reductase Inhibition and Atrial Fibrillation

description: Introduction: Atrial fibrillation (AF) is a prevalent cardiac arrhythmia with significant clinical implications. The potential influence of lipid-lowering therapies, specifically PCSK9 inhibitors (PCSK9i) and HMG-CoA reductase inhibitors (statins), on AF risk remains a topic of interest. This Mendelian Randomization (MR) study aimed to elucidate the causal relationship between genetically predicted inhibition of PCSK9 and HMG-CoA reductase and the risk of AF.
Methods: Utilizing publicly available, summary-level genome-wide association study (GWAS) data, we employed single-nucleotide polymorphisms (SNPs) associated with lower LDL-C levels as instruments for gene-simulated inhibition of PCSK9 and HMG-CoA reductase. Multiple MR techniques were applied to estimate the causal effects, and sensitivity analyses were conducted to validate the results.
Results: Genetically predicted inhibition of PCSK9 demonstrated a reduced risk of AF, with an odds ratio (OR) of 0.92 (95% CI: 0.85 to 0.99, p=0.01) using the inverse variance weighted (IVW) method. In contrast, the inhibition of HMG-CoA reductase did not exhibit a statistically significant association with AF risk (IVW: OR = 1.11, 95% CI: 1.00-1.22, p = 0.05). 
Conclusion: Our MR study suggests that genetically predicted inhibition of PCSK9, but not HMG-CoA reductase, is associated with a lower risk of AF. These findings provide evidence for a causal protective effect of PCSK9i on AF and support the use of PCSK9i for AF prevention in patients with dyslipidemia. Further studies are needed to elucidate the mechanisms underlying the differential effects of PCSK9i and statins on AF and to confirm the clinical implications of our findings.
DOI: 10.6084/m9.figshare.25479148.v1
title: Supplementary Material for: Predicting exacerbations in α1-antitrypsin deficiency using clinical and pulmonary function tests: Portuguese EARCO registry

description: Introduction: Exacerbations are common in individuals with alpha-1-antitrypsin deficiency (AATD) related lung disease. This study intended to identify independent predictive factors for exacerbations in AATD using the Portuguese European Alpha-1 Research Collaboration (EARCO) registry.

Methods: This study includes patients from the Portuguese EARCO registry, a prospective multicentre cohort (NCT04180319). From October 2020 to April 2023 this registry enrolled 137 patients, 14 of whom were excluded for analysis for either missing 12 months of follow-up or baseline pulmonary function.

Results: Among the 123 AATD patients, 27 (22.0%) had at least one exacerbation in the last 12 months of follow-up. Patients with Pi*ZZ phenotype were three times more likely than the rest of the population to experience any exacerbation (32.7% vs 14.1%, p=0.014; OR 3.0). BODE index was significantly higher in exacerbators than in non-exacerbators (3.9±2.4 vs 1.3±1.2; p&lt;0.001), including on multivariate analysis (p=0.002). Similar results were found for BODEx (multivariate p&lt;0.001). DLCO was the only functional parameter independently associated with exacerbations (p=0.024).

Conclusions: DLCO, BODE and BODEx were independent predictors of exacerbations at 12 months in AATD patients. Understanding these risk factors can aid decision-making on AATD-related lung disease management and improve patient outcomes.
DOI: 10.6084/m9.figshare.25479148
title: Supplementary Material for: Predicting exacerbations in α1-antitrypsin deficiency using clinical and pulmonary function tests: Portuguese EARCO registry

description: Introduction: Exacerbations are common in individuals with alpha-1-antitrypsin deficiency (AATD) related lung disease. This study intended to identify independent predictive factors for exacerbations in AATD using the Portuguese European Alpha-1 Research Collaboration (EARCO) registry.

Methods: This study includes patients from the Portuguese EARCO registry, a prospective multicentre cohort (NCT04180319). From October 2020 to April 2023 this registry enrolled 137 patients, 14 of whom were excluded for analysis for either missing 12 months of follow-up or baseline pulmonary function.

Results: Among the 123 AATD patients, 27 (22.0%) had at least one exacerbation in the last 12 months of follow-up. Patients with Pi*ZZ phenotype were three times more likely than the rest of the population to experience any exacerbation (32.7% vs 14.1%, p=0.014; OR 3.0). BODE index was significantly higher in exacerbators than in non-exacerbators (3.9±2.4 vs 1.3±1.2; p&lt;0.001), including on multivariate analysis (p=0.002). Similar results were found for BODEx (multivariate p&lt;0.001). DLCO was the only functional parameter independently associated with exacerbations (p=0.024).

Conclusions: DLCO, BODE and BODEx were independent predictors of exacerbations at 12 months in AATD patients. Understanding these risk factors can aid decision-making on AATD-related lung disease management and improve patient outcomes.
DOI: 10.26188/24977730
title: Readme

description: Marsupials exhibit highly specialized patterns of reproduction and development, making them uniquely valuable for comparative genomics studies with their sister lineage, eutherian (also known as placental) mammals. However, marsupial genomic resources still lag far behind those of eutherian mammals, limiting our insight into mammalian diversity. Here, we present a series of novel genomic resources for the fat-tailed dunnart (<i>Sminthopsis crassicaudata</i>), a mouse-like marsupial that, due to its ease of husbandry and <i>ex-utero</i> development, is emerging as a laboratory model. To enable wider use, we have generated a multi-tissue <i>de novo</i> transcriptome assembly of dunnart RNA-seq reads spanning 15 tissues. This highly representative transcriptome is comprised of 2,093,982 assembled transcripts, with a mean transcript length of 830 bp. The transcriptome mammalian BUSCO completeness score of 93% is the highest amongst all other published marsupial transcriptomes. Additionally, we report an improved fat-tailed dunnart genome assembly which is 3.23 Gb long, organized into 1,848 scaffolds, with a scaffold N50 of 72.64 Mb. The genome annotation, supported by assembled transcripts and <i>ab initio</i> predictions, revealed 21,622 protein-coding genes. Altogether, these resources will contribute greatly towards characterizing marsupial biology and mammalian genome evolution.
DOI: 10.26188/24977730.v1
title: Readme

description: Marsupials exhibit highly specialized patterns of reproduction and development, making them uniquely valuable for comparative genomics studies with their sister lineage, eutherian (also known as placental) mammals. However, marsupial genomic resources still lag far behind those of eutherian mammals, limiting our insight into mammalian diversity. Here, we present a series of novel genomic resources for the fat-tailed dunnart (<em>Sminthopsis crassicaudata</em>), a mouse-like marsupial that, due to its ease of husbandry and <em>ex-utero</em> development, is emerging as a laboratory model. To enable wider use, we have generated a multi-tissue <em>de novo</em> transcriptome assembly of dunnart RNA-seq reads spanning 15 tissues. This highly representative transcriptome is comprised of 2,093,982 assembled transcripts, with a mean transcript length of 830 bp. The transcriptome mammalian BUSCO completeness score of 93% is the highest amongst all other published marsupial transcriptomes. Additionally, we report an improved fat-tailed dunnart genome assembly which is 3.23 Gb long, organized into 1,848 scaffolds, with a scaffold N50 of 72.64 Mb. The genome annotation, supported by assembled transcripts and <em>ab initio</em> predictions, revealed 21,622 protein-coding genes. Altogether, these resources will contribute greatly towards characterizing marsupial biology and mammalian genome evolution.
DOI: 10.26188/24977730.v2
title: Readme

description: Marsupials exhibit highly specialized patterns of reproduction and development, making them uniquely valuable for comparative genomics studies with their sister lineage, eutherian (also known as placental) mammals. However, marsupial genomic resources still lag far behind those of eutherian mammals, limiting our insight into mammalian diversity. Here, we present a series of novel genomic resources for the fat-tailed dunnart (<i>Sminthopsis crassicaudata</i>), a mouse-like marsupial that, due to its ease of husbandry and <i>ex-utero</i> development, is emerging as a laboratory model. To enable wider use, we have generated a multi-tissue <i>de novo</i> transcriptome assembly of dunnart RNA-seq reads spanning 15 tissues. This highly representative transcriptome is comprised of 2,093,982 assembled transcripts, with a mean transcript length of 830 bp. The transcriptome mammalian BUSCO completeness score of 93% is the highest amongst all other published marsupial transcriptomes. Additionally, we report an improved fat-tailed dunnart genome assembly which is 3.23 Gb long, organized into 1,848 scaffolds, with a scaffold N50 of 72.64 Mb. The genome annotation, supported by assembled transcripts and <i>ab initio</i> predictions, revealed 21,622 protein-coding genes. Altogether, these resources will contribute greatly towards characterizing marsupial biology and mammalian genome evolution.
DOI: 10.26188/25479169
title: DUN.CDS.fasta

description: Marsupials exhibit highly specialized patterns of reproduction and development, making them uniquely valuable for comparative genomics studies with their sister lineage, eutherian (also known as placental) mammals. However, marsupial genomic resources still lag far behind those of eutherian mammals, limiting our insight into mammalian diversity. Here, we present a series of novel genomic resources for the fat-tailed dunnart (<em>Sminthopsis crassicaudata</em>), a mouse-like marsupial that, due to its ease of husbandry and <em>ex-utero</em> development, is emerging as a laboratory model. To enable wider use, we have generated a multi-tissue <em>de novo</em> transcriptome assembly of dunnart RNA-seq reads spanning 15 tissues. This highly representative transcriptome is comprised of 2,093,982 assembled transcripts, with a mean transcript length of 830 bp. The transcriptome mammalian BUSCO completeness score of 93% is the highest amongst all other published marsupial transcriptomes. Additionally, we report an improved fat-tailed dunnart genome assembly which is 3.23 Gb long, organized into 1,848 scaffolds, with a scaffold N50 of 72.64 Mb. The genome annotation, supported by assembled transcripts and <em>ab initio</em> predictions, revealed 21,622 protein-coding genes. Altogether, these resources will contribute greatly towards characterizing marsupial biology and mammalian genome evolution.
DOI: 10.26188/25479169.v1
title: DUN.CDS.fasta

description: Marsupials exhibit highly specialized patterns of reproduction and development, making them uniquely valuable for comparative genomics studies with their sister lineage, eutherian (also known as placental) mammals. However, marsupial genomic resources still lag far behind those of eutherian mammals, limiting our insight into mammalian diversity. Here, we present a series of novel genomic resources for the fat-tailed dunnart (<em>Sminthopsis crassicaudata</em>), a mouse-like marsupial that, due to its ease of husbandry and <em>ex-utero</em> development, is emerging as a laboratory model. To enable wider use, we have generated a multi-tissue <em>de novo</em> transcriptome assembly of dunnart RNA-seq reads spanning 15 tissues. This highly representative transcriptome is comprised of 2,093,982 assembled transcripts, with a mean transcript length of 830 bp. The transcriptome mammalian BUSCO completeness score of 93% is the highest amongst all other published marsupial transcriptomes. Additionally, we report an improved fat-tailed dunnart genome assembly which is 3.23 Gb long, organized into 1,848 scaffolds, with a scaffold N50 of 72.64 Mb. The genome annotation, supported by assembled transcripts and <em>ab initio</em> predictions, revealed 21,622 protein-coding genes. Altogether, these resources will contribute greatly towards characterizing marsupial biology and mammalian genome evolution.
DOI: 10.26188/25479166
title: GO_distribution_seqs.csv

description: Marsupials exhibit highly specialized patterns of reproduction and development, making them uniquely valuable for comparative genomics studies with their sister lineage, eutherian (also known as placental) mammals. However, marsupial genomic resources still lag far behind those of eutherian mammals, limiting our insight into mammalian diversity. Here, we present a series of novel genomic resources for the fat-tailed dunnart (<em>Sminthopsis crassicaudata</em>), a mouse-like marsupial that, due to its ease of husbandry and <em>ex-utero</em> development, is emerging as a laboratory model. To enable wider use, we have generated a multi-tissue <em>de novo</em> transcriptome assembly of dunnart RNA-seq reads spanning 15 tissues. This highly representative transcriptome is comprised of 2,093,982 assembled transcripts, with a mean transcript length of 830 bp. The transcriptome mammalian BUSCO completeness score of 93% is the highest amongst all other published marsupial transcriptomes. Additionally, we report an improved fat-tailed dunnart genome assembly which is 3.23 Gb long, organized into 1,848 scaffolds, with a scaffold N50 of 72.64 Mb. The genome annotation, supported by assembled transcripts and <em>ab initio</em> predictions, revealed 21,622 protein-coding genes. Altogether, these resources will contribute greatly towards characterizing marsupial biology and mammalian genome evolution.