cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.bvq83bk6t
title: Climate change drives spatial mismatch and threatens the biotic interactions of the Brazil nut tree

description: Aim: Climate change and deforestation will redistribute the biodiversity
 in the next century. Species-specific differences in the response to such
 stressors will lead to distribution decoupling of interacting species, yet
 consequences for ecosystem services are poorly known. Here, we assess the
 potential effects of future niche mismatch on a key ecosystem service
 mediated by seed dispersal and pollination interactions in the Amazon: the
 sustainable exploitation of Brazil nuts. Location: The Amazon. Major taxa
 studied: Woody plant, medium-sized mammals, and insects. Time period:
 Present day, end of the 21st Century. Methods: Combining ecological niche
 models to simulations of tree cover loss and dispersal constraints, we
 compare the forecasted distribution of the plant to that of its
 interacting fauna of pollinators and seed dispersers. Results: Our
 projections indicate that climate change itself could have no or slightly
 negative effects on the distribution of the Brazil nut tree, expected to
 increase by 6% by year 2090. However, range contractions of nearly half of
 all the suitable climate for pollinators may lead up to 80% reduction on
 co-occurrence potential. In addition, local pollinator richness is
 expected to reduce by 20%, with likely consequences for pollination
 redundancy and resilience to subsequent environment changes. Although
 reductions on the suitable area of some seed dispersers were also
 forecasted in the future, potential co-occurrence with the plant and local
 species richness were mostly unabated in most of our projections. Main
 conclusion: The forecasted declines in pollinator diversity may hamper
 ecosystem function redundancy and threaten the long-term resilience of the
 services provided by Brazil nut trees. Such pervasive and indirect effects
 of climate change, often neglected and unaccounted for in most
 conservation assessments, may cascade into economies and human well-being
 worldwide.
DOI: 10.5061/dryad.wh70rxwks
title: The influence of history, geography and environment on patterns of diversification in the western terrestrial garter snake

description: Aim: A central aim of biogeography is to understand how biodiversity is
 generated and maintained across landscapes. Here, we establish
 phylogenetic and population genetic patterns in a widespread reptile to
 quantify the influence of historical biogeography and current
 environmental variation on patterns of genetic diversity. Location:
 Western North America. Taxon: Western terrestrial garter snake, Thamnophis
 elegans. Methods: We used double-digest RADseq to estimate phylogenetic
 relationships and characterize population genetic structure across the
 three widespread subspecies of T. elegans: T. e. vagrans (wandering garter
 snake), T. e. elegans (mountain garter snake) and T. e. terrestris (coast
 garter snake). We assessed patterns of dispersal and vicariance across
 biogeographic regions using ancestral area reconstruction (AAR) and
 deviations from isolation-by-distance across the landscape using estimated
 effective migration surfaces (EEMS). We identified environmental variables
 potentially shaping local adaptation in regional lineages using
 genetic-environment association (GEA) analyses. Results: We recovered
 three well-differentiated genetic groups that correspond to the three
 subspecies. AAR analyses inferred the eastern Cascade Range as the
 ancestral area, with dispersal to both the east and west across western
 North America. Populations of T. e. elegans displayed a latitudinal
 gradient in genetic variation across the Sierra Nevada and northern
 California, while populations of T. e. terrestris show discrete genetic
 breaks consistent with well-known biogeographic barriers. Lastly, GEA
 analyses identified allele frequency shifts at loci associated with a
 common set of environmental variables in both T. e. elegans and T. e.
 terrestris. Main Conclusion: T. elegans is composed of distinct
 evolutionary lineages, each with its own geographic range and history of
 diversification. T. e. elegans and T. e. terrestris show unique patterns
 of diversification as populations dispersed from east to west and while
 adapting to the new environments they colonized. Historical events,
 landscape features and environmental variation have all contributed to
 patterns of differentiation in T. elegans.
description: thamnophis_elegans_fastqs.txt<br>Directory containing
 .fastq files for all <em>Thamnophis </em>species individuals
 analyzed in the paper. This directory has been compressed as a tar
 archive. To uncompress from the command line:$ tar -zxvf
 thamnophis_elegans_fastqs.tar.gz
 thamnophis_elegans_specimen_information.txt
 This text file contains information on each Thamnophis specimen
 analyzed with GBS data.  This file contains identification numbers for
 voucher specimens and their corresponding barcode
 identification.  
 Basic_VCF_filtering.txt This file
 contains basic commands for calling variants.
DOI: 10.5061/dryad.ht76hdrd1
title: STL files and data to support: Improvements in methods for measuring the volume conductivity of electrically conductive carbon powders

description: Electrically conductive carbon powders are commonly used as filler
 materials in polymers to create electrically semi-conductive composite
 materials for use in battery electrodes and anti-static applications.
 Current methods for characterizing the conductivity of these powders use
 two pistons to compress the powders. Two-piston methods are known to
 underestimate conductivity. This study develops a guard-electrode method
 based on ASTM D257 to better characterize the bulk conductivity and
 impedance spectra of electrically conductive powders. The conductivity and
 impedance spectra of a highly conductive powder (copper powder) and a low
 conductivity powder (cellulose) were used to bound the conductivity of
 carbon black, graphite, and biochar. Powders were measured through a full
 range of compression with both the two-piston and the guard-electrode
 method. In all cases, measurements using the guard-electrode method have
 higher conductivity and lower impedance than the same powders measured
 using the two-piston method. The grain conductivity of the particles is
 obtained through fitting the relationship of conductivity versus packing
 fraction using the GEM equation. The guard-electrode method is shown to be
 more similar to established conductivity values as measured via a
 four-probe technique for copper and graphite then the two-piston method.
DOI: 10.5061/dryad.7h44j0zsc
title: Gene validation and remodelling using proteogenomics of Phytophthora cinnamomi, the causal agent of Dieback

description: This spectral data is in support for the manuscript 'Gene validation
 and remodelling using proteogenomics of Phytophthora cinnamomi, the causal
 agent of Dieback'. This data was used to detect errors in the draft
 genome and curate previously undescribed genes in
 the Phytophthora cinnamomi genome.
DOI: 10.6078/d1wt44
title: Transmission electron microscope images dataset for AutoDetect-mNP (nanorods)

description: AutoDetect-mNP is an unsupervised algorithm capable of detecting
 and segmenting particles from bright-field TEM images and classifying the
 particles based on their shapes, requiring minimum human intervention in
 the process. The algorithm was validated on TEM images of 4 different Au
 nanoparticle systems (nanorods with ~5 aspect ratio, nanorods with ~2
 aspect ratio, mixture of the two nanorods, triangular nanoprisms). This
 dataset contains the unprocessed TEM images of the nanorods and
 mixture. For details regarding the data collection process,
 please refer to https://doi.org/10.1021/jacsau.0c00030.
DOI: 10.5281/zenodo.17437432
title: Seroprevalence of Dirofilaria immitis in traveling dogs: Implications for transboundary pathogen movement

description: This Zenodo repository contains the datasets supporting the journal article titled “Seroprevalence of Dirofilaria immitis in traveling dogs: Implications for transboundary pathogen movement.” The data were generated from a serological survey of 6,699 dogs traveling from 34 countries between September 2022 and December 2023, using pooled and individual testing strategies with the DiroCHEK ELISA assay.

The repository includes two comma‑separated value (CSV) files:





DiroCheck_pooled_spectrophotometric_values.csv: Contains raw spectrophotometric absorbance values for pooled serum samples tested for D. immitis antigen at multiple wavelengths (490, 620, and 650 nm).




DiroCheck_IndividualsFromPositivePools.csv: Contains individual‑level raw spectrophotometric absorbance values for dog serum samples which originated from pools that tested positive, at multiple wavelengths (490, 620, and 650 nm).
DOI: 10.5281/zenodo.17437431
title: Seroprevalence of Dirofilaria immitis in traveling dogs: Implications for transboundary pathogen movement

description: This Zenodo repository contains the datasets supporting the journal article titled “Seroprevalence of Dirofilaria immitis in traveling dogs: Implications for transboundary pathogen movement.” The data were generated from a serological survey of 6,699 dogs traveling from 34 countries between September 2022 and December 2023, using pooled and individual testing strategies with the DiroCHEK ELISA assay.

The repository includes two comma‑separated value (CSV) files:





DiroCheck_pooled_spectrophotometric_values.csv: Contains raw spectrophotometric absorbance values for pooled serum samples tested for D. immitis antigen at multiple wavelengths (490, 620, and 650 nm).




DiroCheck_IndividualsFromPositivePools.csv: Contains individual‑level raw spectrophotometric absorbance values for dog serum samples which originated from pools that tested positive, at multiple wavelengths (490, 620, and 650 nm).
DOI: 10.6078/d1s12h
title: Transmission electron microscope images dataset for AutoDetect-mNP (triangular prisms)

description: AutoDetect-mNP is an unsupervised algorithm capable of detecting
 and segmenting particles from bright-field TEM images and classifying the
 particles based on their shapes, requiring minimum human intervention in
 the process. The algorithm was validated on TEM images of 4
 different Au nanoparticle systems (nanorods with ~5 aspect ratio, nanorods
 with ~2 aspect ratio, mixture of the two nanorods, triangular nanoprisms).
 This dataset contains the unprocessed TEM images of the triangular
 prisms. For details regarding the data collection process, please
 refer to https://doi.org/10.1021/jacsau.0c00030.
DOI: 10.5061/dryad.7h44j0zsd
title: Genomics reveals widespread ecological speciation in flightless insects

description: Recent genomic analyses have highlighted parallel divergence in response
 to ecological gradients, but the extent to which altitude can underpin
 such repeated speciation remains unclear. Wing reduction and flight loss
 have apparently evolved repeatedly in montane insect assemblages, and have
 been suggested as important drivers of hexapod diversification. We test
 this hypothesis using genomic analyses of a widespread wing-polymorphic
 stonefly species complex in New Zealand. We identified over 50,000
 polymorphic genetic markers generated across almost 200 Zelandoperla
 fenestrata stonefly specimens using a newly generated plecopteran
 reference genome, to reveal widespread parallel speciation between
 sympatric full-winged and wing-reduced ecotypes. Rather than the existence
 of a single, widespread, flightless taxon (Zelandoperla pennulata),
 evolutionary genomic data reveal that wing-reduced upland lineages have
 speciated repeatedly and independently from full-winged Z. fenestrata.
 This repeated evolution of reproductive isolation between local ecotype
 pairs that lack mitochondrial DNA differentiation suggests that ecological
 speciation has evolved recently. A cluster of outlier SNPs detected in
 independently wing-reduced lineages, tightly linked in an approximately 85
 kb genomic region that includes the developmental ‘supergene’ doublesex,
 suggests that this ‘island of divergence’ may play a key role in rapid
 ecological speciation.
DOI: 10.5061/dryad.7d7wm37sq
title: Therapeutic inhibition of keratinocyte TRPV3 sensory channel by local anesthetic dyclonine

description: The multimodal sensory channel transient receptor potential vanilloid-3
 (TRPV3) is expressed in epidermal keratinocytes and implicated in chronic
 pruritus, allergy, and inflammation-related skin disorders.
 Gain-of-function mutations of TRPV3 cause hair growth disorders in mice
 and Olmsted Syndrome in human. Nevertheless, whether and how TRPV3 could
 be therapeutically targeted remains to be elucidated. We here report that
 mouse and human TRPV3 channel is targeted by the clinical medication
 dyclonine that exerts a potent inhibitory effect. Accordingly, dyclonine
 rescued cell death caused by gain-of-function TRPV3 mutations and
 suppressed pruritus symptoms in vivo in mouse model. At the single-channel
 level, dyclonine inhibited TRPV3 open probability but not the unitary
 conductance. By molecular simulations and mutagenesis, we further
 uncovered key residues in TRPV3 pore region that could toggle the
 inhibitory efficiency of dyclonine. The functional and mechanistic
 insights obtained on dyclonine-TRPV3 interaction will help to conceive
 updated therapeutics for skin inflammation.
description: The data was mainly collected from patch-clamp recordings.
description: This dataset contains ten excel sheets including all the data
 used to analyze the inhibitory effect of the clinical medication dyclonine
 on thermal TRPV3 channel. Each excel sheet corresponds to a figure, and
 each statistical result in the figure can be found in the excel sheet.
 Information on how the measurements were done can be found in the
 associated manuscript.
DOI: 10.5061/dryad.ffbg79csf
title: Two new fern species from Gunung Mulu National Park, Sarawak, Malaysia

description: Two new fern species from Sarawak, Antrophyum hovenkampii and Pteris
 hovenkampii are described in memory of renowned pteridologist, Peter Hans
 Hovenkamp. Their relationships are inferred using morphological
 comparisons and molecular phylogenetic analyses. A description,
 photographs of key characters, distribution map, and habitat description
 of both new species are provided. Keys to all known species of Antrophyum
 and Pteris in Borneo are also included.
DOI: 10.17182/hepdata.32358.v1/t1
title: "Table 1" of "Multiplicities, topological cross-sections, and single particle inclusive distributions from p p interactions at 12-GeV/c and 24-GeV/c"

description: No description provided.
description: ALL DATA HAVE BEEN OBTAINED BY V.A.UVAROV FROM INVARIANT CROSS SECTIONS. ASSUMPTION SIG(PI-) = 0.91*SIG(CHARGED-) WAS USED.
DOI: 10.17182/hepdata.32358.v1/t2
title: "Table 2" of "Multiplicities, topological cross-sections, and single particle inclusive distributions from p p interactions at 12-GeV/c and 24-GeV/c"

description: No description provided.
description: ALL DATA HAVE BEEN OBTAINED BY V.A.UVAROV FROM INVARIANT CROSS SECTIONS. ASSUMPTION SIG(PI-) = 0.91*SIG(CHARGED-) WAS USED.
DOI: 10.5061/dryad.ttdz08kwc
title: Skin resistance to water gain and loss has changed in cane toads (Rhinella marina) during their Australian invasion

description: The water-permeable skin of amphibians renders them highly sensitive to
 climatic conditions, and interspecific correlations between environmental
 moisture levels and rates of water exchange across the skin suggest that
 natural selection adapts hydroregulatory mechanisms to local challenges.
 How quickly can such mechanisms shift when a species encounters novel
 moisture regimes? Cutaneous resistance to water loss and gain in
 wild-caught cane toads (Rhinella marina) from Brazil, USA (Hawai’i) and
 Australia exhibited strong geographic variation. Cutaneous resistance was
 low in native-range (Brazilian) toads and in Hawai’ian populations (where
 toads were introduced in 1932) but significantly higher in toads from
 eastern Australia (where toads were introduced in 1935). Toads from
 recently-invaded areas in western Australia exhibited cutaneous resistance
 to water loss similar to the native-range populations, possibly because
 toads are restricted to moist sites within this highly arid landscape.
 Rates of rehydration exhibited significant but less extreme geographic
 variation, being higher in the native-range than in invaded regions. Thus,
 in less than a century, cane toads invading areas that impose different
 climatic challenges have diverged in the capacity for hydroregulation.
DOI: 10.57783/4050-me79
title: LibreChat
DOI: 10.17182/hepdata.156184.v1/t1
title: "Figure 7a" of "Jet fragmentation function and groomed substructure of bottom quark jets in proton-proton collisions at 5.02 TeV"

description: The groomed jet radius distribution of inclusive jets.
description: A measurement of the substructure of bottom quark jets (b jets) in proton-proton (pp) collisions is presented. The measurement uses data collected in pp collisions at $\sqrt{s}$ = 5.02 TeV recorded by the CMS experiment in 2017, corresponding to an integrated luminosity of 301 pb$^{-1}$. The soft-drop-groomed jet radius, $R_{g}$, and momentum balance, $z_{g}$, of b quark jets are presented. These observables can be used to test perturbative quantum chromodynamics predictions that account for mass effects. An algorithm to identify and cluster the charged decay daughters of b hadrons is developed for this analysis, which facilitates the exposure of the gluon radiation pattern of b jets using iterative Cambridge--Aachen declustering. Because the b hadron is partially reconstructed from its charged decay daughters, only charged particles are used for the jet substructure studies. In addition, a jet fragmentation function, $z_{b,ch}$, is measured, which is defined as the distribution of the ratio of the transverse momentum ($p_{T}$) of the partially reconstructed b hadron with respect to the charged-particle component of the jet $p_{T}$. The measured distributions are unfolded to the charged-particle level. The b jet substructure is compared to that of inclusive jets, which are dominated by light-quark and gluon jets, to assess the role of the b quark mass. A strong suppression of emissions at small $R_{g}$ values is observed for b jets when compared to inclusive jets, consistent with the dead-cone effect. The measurements are also compared with theoretical predictions from Monte Carlo event generators. This is the first b jet substructure study that clusters together the b hadron decay daughters.
DOI: 10.17182/hepdata.156184.v1/t2
title: "Figure 7b" of "Jet fragmentation function and groomed substructure of bottom quark jets in proton-proton collisions at 5.02 TeV"

description: The groomed momentum balance distribution of inclusive jets.
description: A measurement of the substructure of bottom quark jets (b jets) in proton-proton (pp) collisions is presented. The measurement uses data collected in pp collisions at $\sqrt{s}$ = 5.02 TeV recorded by the CMS experiment in 2017, corresponding to an integrated luminosity of 301 pb$^{-1}$. The soft-drop-groomed jet radius, $R_{g}$, and momentum balance, $z_{g}$, of b quark jets are presented. These observables can be used to test perturbative quantum chromodynamics predictions that account for mass effects. An algorithm to identify and cluster the charged decay daughters of b hadrons is developed for this analysis, which facilitates the exposure of the gluon radiation pattern of b jets using iterative Cambridge--Aachen declustering. Because the b hadron is partially reconstructed from its charged decay daughters, only charged particles are used for the jet substructure studies. In addition, a jet fragmentation function, $z_{b,ch}$, is measured, which is defined as the distribution of the ratio of the transverse momentum ($p_{T}$) of the partially reconstructed b hadron with respect to the charged-particle component of the jet $p_{T}$. The measured distributions are unfolded to the charged-particle level. The b jet substructure is compared to that of inclusive jets, which are dominated by light-quark and gluon jets, to assess the role of the b quark mass. A strong suppression of emissions at small $R_{g}$ values is observed for b jets when compared to inclusive jets, consistent with the dead-cone effect. The measurements are also compared with theoretical predictions from Monte Carlo event generators. This is the first b jet substructure study that clusters together the b hadron decay daughters.
DOI: 10.17182/hepdata.156184.v1/t3
title: "Figure 8a" of "Jet fragmentation function and groomed substructure of bottom quark jets in proton-proton collisions at 5.02 TeV"

description: The groomed jet radius distribution of b jets.
description: A measurement of the substructure of bottom quark jets (b jets) in proton-proton (pp) collisions is presented. The measurement uses data collected in pp collisions at $\sqrt{s}$ = 5.02 TeV recorded by the CMS experiment in 2017, corresponding to an integrated luminosity of 301 pb$^{-1}$. The soft-drop-groomed jet radius, $R_{g}$, and momentum balance, $z_{g}$, of b quark jets are presented. These observables can be used to test perturbative quantum chromodynamics predictions that account for mass effects. An algorithm to identify and cluster the charged decay daughters of b hadrons is developed for this analysis, which facilitates the exposure of the gluon radiation pattern of b jets using iterative Cambridge--Aachen declustering. Because the b hadron is partially reconstructed from its charged decay daughters, only charged particles are used for the jet substructure studies. In addition, a jet fragmentation function, $z_{b,ch}$, is measured, which is defined as the distribution of the ratio of the transverse momentum ($p_{T}$) of the partially reconstructed b hadron with respect to the charged-particle component of the jet $p_{T}$. The measured distributions are unfolded to the charged-particle level. The b jet substructure is compared to that of inclusive jets, which are dominated by light-quark and gluon jets, to assess the role of the b quark mass. A strong suppression of emissions at small $R_{g}$ values is observed for b jets when compared to inclusive jets, consistent with the dead-cone effect. The measurements are also compared with theoretical predictions from Monte Carlo event generators. This is the first b jet substructure study that clusters together the b hadron decay daughters.