cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27186126
title: Data for "Recovery of ecosystem productivity in China by the Clean Air Action plan"

description: All data for "Recovery of ecosystem productivity in China by the Clean Air Action plan". The data includes NPP simulations (2013-2020, 8-years) from process-based (PBM) and machine learning (MLM) models, source data for Figs 1-5 and Extended Data Figs 1-5, and all names are explained in the supplementary materials.
DOI: 10.15468/dd.vg79fk
title: A systematic review of poecilid fish invasions in Africa

description: Occurrences cited in [study](10.21203/rs.3.rs-4649012/v1):
 1100611497
2013633432
583638945
1671750423
2831921727
3073457466
4054710292
3914375207
863213389
1056716435
4167963358
4454560996
4446229418
1889143482
1024548555
DOI: 10.5281/zenodo.13902027
title: Example raw quantification outputs used for extracting view data

description: This data contains the raw quantification outputs from platforms
                     FragPipe, Maxquant, DIA-NN and Spectronaut. We use them as inputs
                     for extracting view data serving as inputs to our newly designed
                     multi-view proteomics framework.
DOI: 10.5281/zenodo.13902028
title: Example raw quantification outputs used for extracting view data

description: This data contains the raw quantification outputs from platforms
                     FragPipe, Maxquant, DIA-NN and Spectronaut. We use them as inputs
                     for extracting view data serving as inputs to our newly designed
                     multi-view proteomics framework.
DOI: 10.15468/dl.egd2kd
title: Occurrence Download

description: A dataset containing 6994 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Bauhinia cinnamomea DC., Ficus benjamina L., Mimosa ceratonia L.)"
 ]
}

 The dataset includes 6994 records from 390 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002231-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/a4cc9206-55de-4e79-b060-1c8c33b93358
title: Dataset underlying the publication "​​Preparing the Next-generation Chemistry Student for Systems Thinking: Bridging Secondary and Higher Education​"

description: This repository comprises the interviews and learning materials for CM. All other data (protocols, quotes from interviews, and raw conceptual models) generated in this study are available as Supplementary Information in the original research article (doi will be provided once published). A readme file is included but briefly, interview data and the learning materials are provided as word or as pdf document files (*.docx or *.pdf).
DOI: 10.4121/a4cc9206-55de-4e79-b060-1c8c33b93358.v1
title: Dataset underlying the publication "​​Preparing the Next-generation Chemistry Student for Systems Thinking: Bridging Secondary and Higher Education​"

description: This repository comprises the interviews and learning materials for CM. All other data (protocols, quotes from interviews, and raw conceptual models) generated in this study are available as Supplementary Information in the original research article (doi will be provided once published). A readme file is included but briefly, interview data and the learning materials are provided as word or as pdf document files (*.docx or *.pdf).
DOI: 10.6084/m9.figshare.26503662
title: A red blood cell-based score in the prognostication of patients with metastatic RCC of the Meet-URO 15 study

description: <b>Aims:</b> Anemia, mean corpuscular volume and red cell distribution width may have some effects on survival outcomes of metastatic renal cell carcinoma (mRCC) patients and are incorporated in a red blood cell (RBC)-based score. Its validity in prognostication of mRCC patients treated with second-line nivolumab was assessed. <b>Patients and methods:</b> Retrospective analysis using Meet-URO-15 cohort of mRCC patients receiving nivolumab in the second-line setting or beyond. Outcomes were overall survival (OS) and progression-free survival (PFS). <b>Results:</b> A total of 390 patients were included. Significant differences in OS and PFS between RBC-based score groups, with group 1 (2 or 3 of the RBC-related prognostic factors) having longer OS (median 29.5 months, 95% CI: 23.1–35.9, versus 11.5 months, 95% CI: 8.5–22.6; <i>p</i> &lt; 0.001) and PFS (7.5 months, 95% CI: 5.5–10.2, versus 4.2 months, 95% CI: 3.3–5.9; <i>p</i> = 0.040) than those in group 0 (0 or 1 RBC-related prognostic factors). Belonging to group 1 independently predicted OS (hazard ratio: 0.65, 95% CI: 0.50–0.85; <i>p</i> = 0.002) but not PFS (hazard ratio: 0.89, 95% CI: 0.70–1.14, <i>p</i> = 0.370) or disease response (OR 0.68, 95% CI: 0.41–1.10; <i>p</i> = 0.118) at multivariable analysis. <b>Conclusion:</b> RBC-based group scores independently predicted OS in mRCC patients treated with nivolumab. This study looked at how certain blood cell measurements (anemia, mean corpuscular volume, red cell distribution width) affect survival in patients with metastatic renal cell carcinoma who are treated with nivolumab, an immunotherapy drug. Researchers analyzed data from 390 patients who received nivolumab as a second-line treatment or beyond. They divided patients into groups based on their blood cell scores. They found that patients with higher scores had better overall survival and progression-free survival compared with those with lower scores. Specifically, patients with better scores lived longer. The study concluded that these scores can help predict survival in these patients treated with nivolumab. Prognostic value of blood cell measurements: Anemia, mean corpuscular volume, red cell distribution width were found to significantly affect survival outcomes in metastatic renal cell carcinoma patients treated with nivolumab. Red blood cell (RBC)-based score predicts survival: The study demonstrated that patients with favorable RBC-based scores had significantly longer overall survival (OS) and progression-free survival compared with those with lower scores. Independent predictor of OS: The RBC-based score independently predicted OS in metastatic renal cell carcinoma patients, highlighting its potential use in improving patient management.
DOI: 10.6084/m9.figshare.26503662.v1
title: A red blood cell-based score in the prognostication of patients with metastatic RCC of the Meet-URO 15 study

description: <b>Aims:</b> Anemia, mean corpuscular volume and red cell distribution width may have some effects on survival outcomes of metastatic renal cell carcinoma (mRCC) patients and are incorporated in a red blood cell (RBC)-based score. Its validity in prognostication of mRCC patients treated with second-line nivolumab was assessed. <b>Patients and methods:</b> Retrospective analysis using Meet-URO-15 cohort of mRCC patients receiving nivolumab in the second-line setting or beyond. Outcomes were overall survival (OS) and progression-free survival (PFS). <b>Results:</b> A total of 390 patients were included. Significant differences in OS and PFS between RBC-based score groups, with group 1 (2 or 3 of the RBC-related prognostic factors) having longer OS (median 29.5 months, 95% CI: 23.1–35.9, versus 11.5 months, 95% CI: 8.5–22.6; <i>p</i> &lt; 0.001) and PFS (7.5 months, 95% CI: 5.5–10.2, versus 4.2 months, 95% CI: 3.3–5.9; <i>p</i> = 0.040) than those in group 0 (0 or 1 RBC-related prognostic factors). Belonging to group 1 independently predicted OS (hazard ratio: 0.65, 95% CI: 0.50–0.85; <i>p</i> = 0.002) but not PFS (hazard ratio: 0.89, 95% CI: 0.70–1.14, <i>p</i> = 0.370) or disease response (OR 0.68, 95% CI: 0.41–1.10; <i>p</i> = 0.118) at multivariable analysis. <b>Conclusion:</b> RBC-based group scores independently predicted OS in mRCC patients treated with nivolumab. This study looked at how certain blood cell measurements (anemia, mean corpuscular volume, red cell distribution width) affect survival in patients with metastatic renal cell carcinoma who are treated with nivolumab, an immunotherapy drug. Researchers analyzed data from 390 patients who received nivolumab as a second-line treatment or beyond. They divided patients into groups based on their blood cell scores. They found that patients with higher scores had better overall survival and progression-free survival compared with those with lower scores. Specifically, patients with better scores lived longer. The study concluded that these scores can help predict survival in these patients treated with nivolumab. Prognostic value of blood cell measurements: Anemia, mean corpuscular volume, red cell distribution width were found to significantly affect survival outcomes in metastatic renal cell carcinoma patients treated with nivolumab. Red blood cell (RBC)-based score predicts survival: The study demonstrated that patients with favorable RBC-based scores had significantly longer overall survival (OS) and progression-free survival compared with those with lower scores. Independent predictor of OS: The RBC-based score independently predicted OS in metastatic renal cell carcinoma patients, highlighting its potential use in improving patient management.
DOI: 10.34965/i7517
title: 20174084
DOI: 10.14469/hpc/14513
title: ChemComm

description: ChemComm data
DOI: 10.14469/hpc/14639
title: Oxidation of PEVQAL, C-C one-electron bond, p-NH2, wB97XD/Def2-TZVPP

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/14640
title: Oxidation of PEVQAL, C-C one-electron bond wB97XD/Def2-TZVPP radical cation G = -1615.377257

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/14641
title: C2F6 radical cation wB97XD/Def2-TZVPP, G = -674.948857

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/14643
title: Oxidation of PEVQAL, C-C one-electron bond wB97XD/Def2-TZVPP radical cation geometry, dication

description: Gaussian 16 (C01) calculation
DOI: 10.15468/dl.urscds
title: Occurrence Download

description: A dataset containing 1860668 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1860668 records from 997 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002209-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.946435
title: Continuous thermosalinograph oceanography along MedSHIP cruise TAlPro2016 on RV Angeles Alvariño

description: This data set contains underway Temperature, Salinity and Fluorescence data collected by a Thermosalinograph (TSG) during the MedSHIP cruise TAlPro2016 (Palermo - Barcelona, RV Angeles Alvariño, 18/08/2016 - 29/08/2016). Underway data was collected along the cruise track with an autonomous TSG system, consisting of a SBE21 together with a SBE38 Thermometer. Both systems worked independent from each other throughout the cruise. While temperature is taken at the water inlet in about 5 m depth (SBE38, S/N 0437, last calibration on 11/07/2008), salinity is estimated within the interior TSG from conductivity and interior temperature (SBE21, S/N 3329, last calibration on 15/01/2016). A Turner fluorometer 10-Au-005 (S/N 7019 RTX, last calibration on 21/01/2016) is connected to the system.
description: No correction against independent data was performed, neither for temperature nor for salinity.
DOI: 10.15468/dl.gdbzzd
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calanthe maquilingensis Ames"
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0113925-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wz9ccm
title: Occurrence Download

description: A dataset containing 6563 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rana boylii Baird, 1854"
 ]
}

 The dataset includes 6563 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299287-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dsiybs
title: Occurrence Download

description: A dataset containing 858 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Données supplémentaires Atlas des Mammifères marins"
 ]
}

 The dataset includes 858 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024932-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nnv5cn
title: Occurrence Download

description: A dataset containing 1786 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia elata A.Cunn. ex Benth.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1786 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0113926-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.947592
title: Optical and hydroacoustical measurements of bubble-flow seepage offshore Oregon (~46° N) during RV FALKOR cruise FK190612

description: Two lander-based devices, the Bubble-Box and GasQuant-II, were used to investigate the spatial and temporal variability and total gas flow rates of a seep area offshore Oregon, United States. The Bubble-Box is a stereo camera–equipped lander that records bubbles inside a rising corridor with 80 Hz, allowing for automated image analyses of bubble size distributions and rising speeds. GasQuant is a hydroacoustic lander using a horizontally oriented multibeam swath (Imagenex DeltaT) to record the backscatter intensity of bubble streams passing the swath plain. The experimental set up at the Astoria Canyon site at a water depth of about 500m aimed at calibrating the hydroacoustic GasQuant data with the visual Bubble-Box data for a spatial and temporal flow rate quantification of the site. For about 90h in total, both systems were deployed simultaneously and pressure and temperature data were recorded using a CTD as well. The data presented here contain post-processed information collected with the two lander-based devices during the cruise FK190612 on board RV FALKOR from the Schmidt-Ocean Institute in June 2019 (https://schmidtocean.org/cruise/methane-seeps-at-edge-of-hydrate-stability/). The first dataset contains post-processed ASCII information of the optic data recorded with the Bubble-Box system during two deployments (BBM-11 and BBM-17) and includes overall results of bubble sizes, volumes, rising speeds and flow rates of the observed bubble streams. A second dataset contains the acoustic backscatter of a seep site collected with the GasQuant II system during two deployments (GQM-3 and GQM-4). Each file contains the uncalibrated backscatter averaged in time (1 minute average) of the original dataset recorded with the GasQuant II. Files are provided in the Imagenex DeltaT data output format (*.83b) and can be easily visualized and inspected using FMMidwater (QPS) .
description: Bubble Box: Overall results of post-processed information of optical data collected with the Bubble-Box lander at a seep area offshore Oregon during cruise FK190612. Data were processed with the Python routines created at the Deep Sea Monitoring group (GEOMAR). The files include bubble volumes, diameters, rising velocities and flow rates for each Bubble-Box measurents. Results are given for the observations of camera 1, camera 2 and the stereo matching results. For further information please contact kkoeser@geomar.de, mshe@geomar.de or jgreinert@geomar.de.Gas Quant II:Device: Imagenex DeltaT multibeamFrequency device: 260kHzSwath Opening angle: 120°N° beams: 120Beam aperture: 3° x 3°The files have been produced with specialized python tools at the Deep Sea Monitoring (GEOMAR) and contains the average hydroacoustic data (1minute average) of the *.83b files originally collected at a seep area offshore Oregon during cruise FK190612. Data can be visualized with e.g. FMMidwater (QPS). For further information please contact jgreinert@geomar.de, peter.urban@ugent.be or mveloso@geomar.de.
DOI: 10.15468/dl.ncjtt4
title: Occurrence Download

description: A dataset containing 886 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Incilius luetkenii (Boulenger, 1891)"
 ]
}

 The dataset includes 886 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299301-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.946604
title: Seagrass meadows derived from field to spaceborne earth observation at Yule Point, a coastal habitat in the Cairns section of the Great Barrier Reef, October 2017 to July 2020

description: Seagrass meadow extent and meadow-scape was mapped using four alternative approaches at Yule Point, a coastal clear water habitat, in the Cairns section of the Great Barrier Reef, between October 2017 and July 2020. Approach 1 included mapping meadow boundaries and meadow-scape (including patches and scars) during low spring tides on foot using a handheld Garmin GPSMap 64s (accuracy ±1.5–3 m) on the 15 October 2017. Approach 2 was where the meadows were surveyed at low tide with observations from a helicopter (Robinson R44/R66) on the 05 September 2017. The boundaries of the meadows were delineated by on-board observers and tracked by helicopter (at 25 ±5 m altitude) using the tracks setting on a handheld Garmin GPSMap 64s. Within these meadows, observational spot-check data was collected at an altitude of 1–2 m above the substrate, from three haphazard placements of a 0.25 m2 quadrat out the side of the helicopter at a number haphazardly scattered points (10 m2). Approach 3 used imagery collected during low spring tides with a DJI Mavic 2 Pro UAV at an altitude of 30 m (85% sidelap and frontlap) on the 20 July 2020. The orthomosaic of the captured images was created in PIX4D and the resolution was 0.2cm/pixel. Approach 4 used PlanetScope Dove imagery captured on 05 September 2017 and 09 August 2019 coinciding as close as possible to the field-surveys in 2017 and 2019, with 3.7 m x 3.7 m pixels (nadir viewing) acquired from the PlanetScope archive.For Approach 1, fine-scale meadow-scape boundaries (patches or scars within 5.5 hectare area) were mapped using the imported GPS track to create a polyline which was then smoothed using the B-spline algorithm and saved as a polygon. In Approach 2, meso-scale seagrass meadow boundaries were mapped from the GPS tracks and by on-screen interpolation based on geolocated spot-checks, field notes, and geotagged oblique aerial photographs acquired from the helicopter. For Approach 3, spatially explicit seagrass maps were created, including seagrass cover, from the UAV nadir imagery using deep-learning techniques. Due to the lower seagrass density and occurrence of morphologically smaller species, the classes used were: (1) bare sediment, (2) low seagrass cover (&gt;0 ≤25%), (3) high seagrass cover (&gt;25%), (4) rubble/algae. For Approach 4, we created spatially explicit seagrass maps from PlanetScope Dove imagery, and conducted the classification using a machine-learning model (Random Forest) coupled with a Boot-strapping process (100 iterations). The final model predictions were then gathered into separate rasters, based on Bootstrap Probability thresholds of 60% and 100%. The final rasters were cleaned using a majority filter algorithm, to eliminate stray pixel predictions using a moving window between 3 and 9 pixels depending on the size of the imagery.
DOI: 10.1594/pangaea.946605
title: Seagrass meadows derived from field to spaceborne earth observation at Green Island (Wunyami), a reef habitat in the Cairns section of the Great Barrier Reef, November 2020

description: Seagrass meadow extent and meadow-scape was mapped using two alternative approaches at Green Island, a reef clear water habitat, in the Cairns section of the Great Barrier Reef, in November 2020. Approach 1 included mapping seagrass meadow-scape (including patches and scars) using imagery captured during low spring tides with a DJI Mavic 2 Pro UAV at an altitude of 100 m (85% sidelap and frontlap) on the 25 November 2020. The orthomosaic of the captured images was created in PIX4D and the resolution was 2.45cm/pixel. Approach 2 used PlanetScope Dove imagery captured on 05 November 2020 coinciding as close as possible to the field-surveys from 25 to 27 November 2020, with 3.7 m x 3.7 m pixels (nadir viewing) acquired from the PlanetScope archive.For Approach 1, spatially explicit seagrass maps were created, including seagrass cover, from the UAV nadir imagery using deep-learning techniques. The abundance classes used were: (1) absence of seagrass (0%), (2) low seagrass cover (1-15%), (3) medium seagrass cover (&gt;15-50%), and (4) high seagrass cover (&gt;50%). For Approach 2, we created spatially explicit seagrass maps from PlanetScope Dove imagery, and conducted the classification using a machine-learning model (Random Forest) coupled with a Boot-strapping process (100 iterations). The final model predictions were then gathered into separate rasters, based on Bootstrap Probability thresholds of 60% and 100%. The final rasters were cleaned using a majority filter algorithm, to eliminate stray pixel predictions using a moving window between 3 and 9 pixels depending on the size of the imagery.
DOI: 10.15468/dl.pjlvt8
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Base BOMBINA du Parc Naturel régional Lorraine - EPAMA \"Vallée de la Meuse\"/2006 (Etude ESOPE)"
 ]
}

 The dataset includes 111 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024945-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.