cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22609483
title: Additional file 3 of A novel machine learning model based on ubiquitin-related gene pairs and clinical features to predict prognosis and treatment effect in colon adenocarcinoma

description: Additional file 3: Table S3. The list of gene pairs and corresponding coefficient.
DOI: 10.6084/m9.figshare.14741179
title: Additional file 1 of A seven-gene prognostic signature predicts overall survival of patients with lung adenocarcinoma (LUAD)

description: Additional file 1: Table S1: Source data underlying all figures in the analysis.
DOI: 10.6084/m9.figshare.14741182.v1
title: Additional file 2 of A seven-gene prognostic signature predicts overall survival of patients with lung adenocarcinoma (LUAD)

description: Additional file 2: Table S2: The 31 unreported prognostic genes associated with lung adenocarcinoma patients survival.
DOI: 10.6084/m9.figshare.22605205
title: Additional file 2 of Single-cell transcriptome analysis reveals liver injury induced by glyphosate in mice

description: Additional file 2: Table S1. The top 100 genes for 13 major cell lineages. Table S2. The cell number for 13 major cell lineages. Table S3. The differentially expressed genes for 13 major cell lineages after glyphosate treatment. Table S4. The cell number for HSC cell subtypes. Table S5. The differentially expressed genes for HSC cell after glyphosate treatment. Table S6. The GO analysis for upregulated DEGs of HSC cells after GLY treatment. Table S7. The cell number for hepatocyte cell subtypes. Table S8. The differentially expressed genes for hepatocyte cell subtypes. Table S9. The differentially expressed genes for hepatocyte cell subtypes after GLY treatment. Table S10. The GO analysis for upregulated DEGs of hepatocyte cells after GLY treatment. Table S11. The cell number for Kupffer cell subtypes. Table S12. The average expression level of differentially expressed genes of KC4 cell for each sample. Table S13. The average fold change (avg_logFC) for differentially expressed cytokines of each Kupffer cell subtype after GLY treatment. Table S14. The average expression level of common differentially expressed genes of KC cell subtypes for each sample. Table S15. The cell number for LCM cell subtypes. Table S16. The differentially expressed genes for LCM cell subtypes after glyphosate treatment.
DOI: 10.6084/m9.figshare.22605205.v1
title: Additional file 2 of Single-cell transcriptome analysis reveals liver injury induced by glyphosate in mice

description: Additional file 2: Table S1. The top 100 genes for 13 major cell lineages. Table S2. The cell number for 13 major cell lineages. Table S3. The differentially expressed genes for 13 major cell lineages after glyphosate treatment. Table S4. The cell number for HSC cell subtypes. Table S5. The differentially expressed genes for HSC cell after glyphosate treatment. Table S6. The GO analysis for upregulated DEGs of HSC cells after GLY treatment. Table S7. The cell number for hepatocyte cell subtypes. Table S8. The differentially expressed genes for hepatocyte cell subtypes. Table S9. The differentially expressed genes for hepatocyte cell subtypes after GLY treatment. Table S10. The GO analysis for upregulated DEGs of hepatocyte cells after GLY treatment. Table S11. The cell number for Kupffer cell subtypes. Table S12. The average expression level of differentially expressed genes of KC4 cell for each sample. Table S13. The average fold change (avg_logFC) for differentially expressed cytokines of each Kupffer cell subtype after GLY treatment. Table S14. The average expression level of common differentially expressed genes of KC cell subtypes for each sample. Table S15. The cell number for LCM cell subtypes. Table S16. The differentially expressed genes for LCM cell subtypes after glyphosate treatment.
DOI: 10.6084/m9.figshare.10026566.v2
title: <i>IRX1</i> hypermethylation promotes heart failure by inhibiting CXCL14 expression

description: To identify the mechanism and functions of <i>IRX1</i> in heart failure (HF) and provide evidence for new therapies. Bioinformatic analysis was performed to select target genes in HF cells compared to normal groups. Experimental rats were treated in a controllable manner to explore how <i>IRX1</i> methylation accounted for this disease <i>in vivo</i>. Cardiac ultrasonic and morphologic examinations were conducted to test the mouse heart and evaluate the degree of cardiac impairment at in the level of organization. GSEA analysis revealed the relative enrichment of functions. Immunofluorescent assays, western blotting and qRT-PCR were used to determine the DNA methylation and expression levels. <i>IRX1</i> was hypermethylated in heart failure and identified as a target gene by bioinformatic analysis. Transverse aortic constriction (TAC) induced heart failure in rats, while 5-aza-2ʹ-deoxycytidine (5-Aza) alleviated heart failure in rats according to medical cardiac indexes. Western blotting and qRT-PCR revealed that a conspicuous difference in the expression of <i>IRX1</i> and <i>CXCL14</i> between HF and normal cardiac cells. As a result of gene methylation, left ventricular hypertrophy and cardiac fibrosis is usually accompanied by heart failure. Moreover, is the results implied that the demethylation of <i>IRX1</i> improves heart failure <i>in vivo</i> and <i>in vitro. IRX1</i> methylation induced damaged cardiac function and even heart failure, which has important implications for HF treatment and diagnosis.
DOI: 10.6084/m9.figshare.10026566.v3
title: <i>IRX1</i> hypermethylation promotes heart failure by inhibiting CXCL14 expression

description: To identify the mechanism and functions of <i>IRX1</i> in heart failure (HF) and provide evidence for new therapies. Bioinformatic analysis was performed to select target genes in HF cells compared to normal groups. Experimental rats were treated in a controllable manner to explore how <i>IRX1</i> methylation accounted for this disease <i>in vivo</i>. Cardiac ultrasonic and morphologic examinations were conducted to test the mouse heart and evaluate the degree of cardiac impairment at in the level of organization. GSEA analysis revealed the relative enrichment of functions. Immunofluorescent assays, western blotting and qRT-PCR were used to determine the DNA methylation and expression levels. <i>IRX1</i> was hypermethylated in heart failure and identified as a target gene by bioinformatic analysis. Transverse aortic constriction (TAC) induced heart failure in rats, while 5-aza-2ʹ-deoxycytidine (5-Aza) alleviated heart failure in rats according to medical cardiac indexes. Western blotting and qRT-PCR revealed that a conspicuous difference in the expression of <i>IRX1</i> and <i>CXCL14</i> between HF and normal cardiac cells. As a result of gene methylation, left ventricular hypertrophy and cardiac fibrosis is usually accompanied by heart failure. Moreover, is the results implied that the demethylation of <i>IRX1</i> improves heart failure <i>in vivo</i> and <i>in vitro. IRX1</i> methylation induced damaged cardiac function and even heart failure, which has important implications for HF treatment and diagnosis.
DOI: 10.6084/m9.figshare.22609477.v1
title: Additional file 1 of A novel machine learning model based on ubiquitin-related gene pairs and clinical features to predict prognosis and treatment effect in colon adenocarcinoma

description: Additional file 1: Table S1. Expressing characteristics of patients with COAD in TCGA database.
DOI: 10.6084/m9.figshare.22609507
title: Additional file 1 of Sleep patterns correlates with the efficacy of tDCS on post-stroke patients with prolonged disorders of consciousness

description: Additional file 1. The demographic and clinical characteristics of the all patients we detected.
DOI: 10.6084/m9.figshare.12123717.v1
title: A nonparametric statistical method for two crossing survival curves

description: In comparative research on time-to-event data for two groups, when two survival curves cross each other, it may be difficult to use the log-rank test and hazard ratio (HR) to properly assess the treatment benefit. Our aim was to identify a method for evaluating the treatment benefits for two groups in the above situation. We quantified treatment benefits based on an intuitive measure called the area between two survival curves (ABS), which is a robust measure of treatment benefits in clinical trials regardless of whether the proportional hazards assumption is violated or two survival curves cross each other. Additionally, we propose a permutation test based on the ABS, and we evaluate the effectiveness and reliability of this test with simulated data. The ABS permutation test is a robust statistical inference method with an acceptable type I error rate and superior power to detect differences in treatment effects, especially when the proportional hazards assumption is violated. The ABS can be used to intuitively quantify treatment differences over time and provide reliable conclusions in complicated situations, such as crossing survival curves.
DOI: 10.6084/m9.figshare.22609510
title: Additional file 2 of Sleep patterns correlates with the efficacy of tDCS on post-stroke patients with prolonged disorders of consciousness

description: Additional file 2. Scale scores and sleep cycles of patients enrolled in the intervention.
DOI: 10.6084/m9.figshare.22609510.v1
title: Additional file 2 of Sleep patterns correlates with the efficacy of tDCS on post-stroke patients with prolonged disorders of consciousness

description: Additional file 2. Scale scores and sleep cycles of patients enrolled in the intervention.
DOI: 10.6084/m9.figshare.22609480.v1
title: Additional file 2 of A novel machine learning model based on ubiquitin-related gene pairs and clinical features to predict prognosis and treatment effect in colon adenocarcinoma

description: Additional file 2: Table S2. 807 URGs.
DOI: 10.6084/m9.figshare.7405199
title: Additional file 3: of Identification of novel compound heterozygous SPG7 mutations-related hereditary spastic paraplegia in a Chinese family: a case report

description: Table S2. The ataxia gene panel. It is a list of hereditary ataxia-related genes analysed in the proband. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.22609412
title: Additional file 3 of The gold-ringed octopus (Amphioctopus fangsiao) genome and cerebral single-nucleus transcriptomes provide insights into the evolution of karyotype and neural novelties

description: Additional file 3: Command line scripts used in present study. Script 1–phylogenetic and chromosomal analyses. Script 2–Chromosome evolution. Script 3–Gene family analyses. Script 4–Single cell analyses.
DOI: 10.6084/m9.figshare.22609450
title: Additional file 1 of Characterization of a novel AA3_1 xylooligosaccharide dehydrogenase from Thermothelomyces myriococcoides CBS 398.93

description: Additional file 1: Details of the characterized AA3_1 proteins in CAZy database.
DOI: 10.6084/m9.figshare.14741179.v1
title: Additional file 1 of A seven-gene prognostic signature predicts overall survival of patients with lung adenocarcinoma (LUAD)

description: Additional file 1: Table S1: Source data underlying all figures in the analysis.
DOI: 10.6084/m9.figshare.22605209
title: Additional file 2 of Efficient biosynthesis of (R)-mandelic acid from styrene oxide by an adaptive evolutionary Gluconobacter oxydans STA

description: Additional file 2: Table S4. 1. Comparative genomic analysis of WT VS STA. 2. Key mutations in the evolved strain STA. 3. Differentially expressed gene of WT VS WT-3g. 4. Differentially expressed gene of STA VS STA-3g. 5. Differentially expressed gene of WT VS STA. 6. Differentially expressed gene of WT-3g VS STA-3g.
DOI: 10.6084/m9.figshare.12123762
title: XRD data from Enhanced magnetic performance of aligned wires assembled from nanoparticles: from nanoscale to macroscale

description: Data for drawing figure 4 as the XRD measurement results.
DOI: 10.6084/m9.figshare.22605209.v1
title: Additional file 2 of Efficient biosynthesis of (R)-mandelic acid from styrene oxide by an adaptive evolutionary Gluconobacter oxydans STA

description: Additional file 2: Table S4. 1. Comparative genomic analysis of WT VS STA. 2. Key mutations in the evolved strain STA. 3. Differentially expressed gene of WT VS WT-3g. 4. Differentially expressed gene of STA VS STA-3g. 5. Differentially expressed gene of WT VS STA. 6. Differentially expressed gene of WT-3g VS STA-3g.
DOI: 10.6084/m9.figshare.22609507.v1
title: Additional file 1 of Sleep patterns correlates with the efficacy of tDCS on post-stroke patients with prolonged disorders of consciousness

description: Additional file 1. The demographic and clinical characteristics of the all patients we detected.
DOI: 10.6084/m9.figshare.22609532.v1
title: Additional file 14 of Tumor stemness score to estimate epithelial-to-mesenchymal transition (EMT) and cancer stem cells (CSCs) characterization and to predict the prognosis and immunotherapy response in bladder urothelial carcinoma

description: Additional file 14: Table S3. Biomarkers of different cell types, clusters, and states.
DOI: 10.6084/m9.figshare.22609538
title: Additional file 16 of Tumor stemness score to estimate epithelial-to-mesenchymal transition (EMT) and cancer stem cells (CSCs) characterization and to predict the prognosis and immunotherapy response in bladder urothelial carcinoma

description: Additional file 16: Table S5. The DEGs between three clusters.
DOI: 10.6084/m9.figshare.7405226
title: Additional file 5: of Identification of novel compound heterozygous SPG7 mutations-related hereditary spastic paraplegia in a Chinese family: a case report

description: Table S4. Variation annotations of the proband. It is an excel table containing the detailed annotations of all the variations validated in the proband. (XLSX 4239 kb)
DOI: 10.6084/m9.figshare.12123762.v1
title: XRD data from Enhanced magnetic performance of aligned wires assembled from nanoparticles: from nanoscale to macroscale

description: Data for drawing figure 4 as the XRD measurement results.
DOI: 10.6084/m9.figshare.22609538.v1
title: Additional file 16 of Tumor stemness score to estimate epithelial-to-mesenchymal transition (EMT) and cancer stem cells (CSCs) characterization and to predict the prognosis and immunotherapy response in bladder urothelial carcinoma

description: Additional file 16: Table S5. The DEGs between three clusters.
DOI: 10.6084/m9.figshare.22609541
title: Additional file 17 of Tumor stemness score to estimate epithelial-to-mesenchymal transition (EMT) and cancer stem cells (CSCs) characterization and to predict the prognosis and immunotherapy response in bladder urothelial carcinoma

description: Additional file 17: Table S6. The univariate Cox analysis of TS-related genes.
DOI: 10.6084/m9.figshare.7405199.v1
title: Additional file 3: of Identification of novel compound heterozygous SPG7 mutations-related hereditary spastic paraplegia in a Chinese family: a case report

description: Table S2. The ataxia gene panel. It is a list of hereditary ataxia-related genes analysed in the proband. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.22609544
title: Additional file 18 of Tumor stemness score to estimate epithelial-to-mesenchymal transition (EMT) and cancer stem cells (CSCs) characterization and to predict the prognosis and immunotherapy response in bladder urothelial carcinoma

description: Additional file 18: Table S7. PCA analysis and PCA coefficient of TS-related genes to calculate TS score.
DOI: 10.6084/m9.figshare.22609547.v1
title: Additional file 19 of Tumor stemness score to estimate epithelial-to-mesenchymal transition (EMT) and cancer stem cells (CSCs) characterization and to predict the prognosis and immunotherapy response in bladder urothelial carcinoma

description: Additional file 19: Table S8. The GSEA analysis between low and high TS score group in TCGA BLCA cohort.
DOI: 10.6084/m9.figshare.22609535
title: Additional file 15 of Tumor stemness score to estimate epithelial-to-mesenchymal transition (EMT) and cancer stem cells (CSCs) characterization and to predict the prognosis and immunotherapy response in bladder urothelial carcinoma

description: Additional file 15: Table S4. GO and KEGG gene function enrichment analysis of TS biomarkers.
DOI: 10.6084/m9.figshare.22609535.v1
title: Additional file 15 of Tumor stemness score to estimate epithelial-to-mesenchymal transition (EMT) and cancer stem cells (CSCs) characterization and to predict the prognosis and immunotherapy response in bladder urothelial carcinoma

description: Additional file 15: Table S4. GO and KEGG gene function enrichment analysis of TS biomarkers.
DOI: 10.6084/m9.figshare.22609544.v1
title: Additional file 18 of Tumor stemness score to estimate epithelial-to-mesenchymal transition (EMT) and cancer stem cells (CSCs) characterization and to predict the prognosis and immunotherapy response in bladder urothelial carcinoma

description: Additional file 18: Table S7. PCA analysis and PCA coefficient of TS-related genes to calculate TS score.
DOI: 10.7925/drs1.duchas_5076882
title: Old Crafts

description: Story collected by Eveline Byrne, a student at Louth (C.) school (Louth, Co. Louth) (no informant identified).
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher M. Ní Chasaide.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5117424
title: Easter Saturday

description: Story collected by a student at Clonmellon (B.) school (Clonmellon, Co. Westmeath) (no informant identified).
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher P. Ó Droighneáin.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_4925934
title: When Wexford Rose

description: Story collected by Maureen Doyle, a student at St Brigid's Convent, Goresbridge school (Goresbridge, Co. Kilkenny) (no informant identified).
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher Sr. Aibhistín.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5076883
title: Customs at Wakes

description: Story collected by Nancy Mc Guinness, a student at Ardee (Mercy Convent) school (Ardee, Co. Louth) (no informant identified).
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher Sr M. Angel.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_4925948
title: Hedge-School

description: Story collected by a student at St Brigid's Convent, Goresbridge school (Goresbridge, Co. Kilkenny) from informant P. Ó Leathlóir.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher Sr. Aibhistín.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5117425
title: In the Penal Times

description: Story collected by a student at Athlone (Mixed) school (Athlone, Co. Westmeath) from informant Mr W. Taylor.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher T. Hunter.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5076887
title: Old Crafts

description: Story collected by Freda Mc Keown, a student at Louth (C.) school (Louth, Co. Louth) (no informant identified).
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher M. Ní Chasaide.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5117426
title: Mermaid

description: Story collected by a student at Raharney (C.) school (Raharney, Co. Westmeath) from informant Mrs Mc Kenna.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher Mrs. Conway.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_4925956
title: Seanbhóthar

description: Story collected by a student at St Brigid's Convent, Goresbridge school (Goresbridge, Co. Kilkenny) (no informant identified).
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher Sr. Aibhistín.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5076891
title: Local Games - Lazy Mary

description: Story collected by Pat Farrell, a student at Stormanstown, Ardee school (Stormanstown, Co. Louth) (no informant identified).
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher P. Ó Ceallaigh.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5117428
title: May Day

description: Story collected by Míchéal Ó Cléirigh, a student at Clonmellon (B.) school (Clonmellon, Co. Westmeath) from 2 informants.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher P. Ó Droighneáin.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_4925973
title: Droichead Góir

description: Story collected by a student at St Brigid's Convent, Goresbridge school (Goresbridge, Co. Kilkenny) from informant P. Ó Leathlóir.
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher Sr. Aibhistín.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.
DOI: 10.7925/drs1.duchas_5117431
title: Leprechaun

description: Story collected by a student at Raharney (C.) school (Raharney, Co. Westmeath) (no informant identified).
description: Collected as part of the Schools' Folklore scheme, 1937-1938, under the supervision of teacher Mrs. Conway.
description: Supported by funding from the Department of Arts, Heritage and the Gaeltacht (Ireland), University College Dublin, and the National Folklore Foundation (Fondúireacht Bhéaloideas Éireann), 2014-2016.