cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28284860.v2
title: Bootstrapped coefficient estimates and 95% confidence intervals from the global iSSA model for each lion.

description: This table presents bootstrapped coefficient estimates and 95% confidence intervals from the global iSSA model for each lion, associated with the manuscript <i>Prey abundance rather than catchability drives large carnivore habitat selection in a heterogeneous landscape</i>. The global model for M4 was a modified version of the global model used for all other lions that did not include CER since M4 did not form a home range.
DOI: 10.15468/dl.w4fw6t
title: Occurrence Download

description: A dataset containing 236508 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Cervus elaphus Linnaeus, 1758"
 ]
}

 The dataset includes 236508 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009412-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28514288.v1
title: 20250301_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.28795256.v3
title: Dataset arthropods - Catfolis et al.

description: This dataset includes abundance and biomass data of arthropod orders captured a field campaign which lasted from July 2023 to October 2023. Arthropods were captured with 3 different technique to sample 3 different forest strata: pitfall traps (PF) to capture active, ground-dwelling arthropods reliant on the litter and soil layer, including taxa associated with deadwood and decomposition processes; sweep netting (SN) targeting arthropods associated with the understory vegetation and environment; beating sheet method (BS) sampling arthropods residing on shrubs and small trees, such as plant-eating insects. Based on the data we want to assess how overall forest structural complexity and the complexity of the forest strata affects arthropod abundance and biomass.
DOI: 10.6084/m9.figshare.14291864.v1
title: The Implementation of Emergency Aid as an exceptional measure of social protection

description: Abstract Emergency Aid, instituted by Law 13982, of 2020, is one of the biggest initiatives of the Brazilin Federal Government to minimize the economic effects of the COVID-19 pandemic. This aid is directed at the most vulnerable population, among them, the beneficiaries of the conditional cash transfer program “Bolsa Família” (PBF) and those enrolled in the single registry for social protection “Cadastro Único para Programas Sociais do Governo Federal” (CadÚnico). The benefit also covers informal employees, self-employed and individual microentrepreneurs (MEI). Based on documentary analysis and through direct observation, this study sought to outline the process of implementing emergency aid measures, within the framework established by the Ministry of Citizenship (MC), through the system-level bureaucracy approach.
DOI: 10.6084/m9.figshare.26526019.v1
title: Supplementary Material for: Claudin-1 in head and neck squamous cell carcinoma

description: Introduction. The objective response rate to immunotherapy is limited in recurrent/metastatic head and neck squamous cell carcinoma (HNSCC) patients, whose prognosis is still dismal. Few prognostic factors are clinically available, mostly related to patient or disease characteristics. Gene expression signatures offer better prognostic abilities but are mainly used in research. One such GE model classifies HNSCC into 6 clusters with different prognoses. Claudin-1 (CLDN1), which influences tumor microenvironment and immune cell infiltration, has emerged as a potential target, especially in cancers like HNSCC with high CLDN1 expression.
Methods. A single-center cohort of 100 loco-regionally advanced HNSCC patients from the BD2Decide observational study was analyzed. Patients were selected to balance long-term survivors and deceased patients, including HPV-negative and HPV-positive cases. Primary tumor specimens underwent GE analysis using Affymetrix ClariomD chips. Primary endpoint was overall survival (OS).
Results. The cohort comprised 100 HNSCC patients with a median age of 60 years, predominantly men (76%). Median OS and DFS were 94.24 and 42.79 months, respectively. CLDN1 expression varied significantly among primary sites, being highest in hypopharynx cancers. Differences in expression were not significant when stratified by HPV status or clinical stage. CLDN1 expression differed across the 6 transcriptomic clusters, with the highest levels in clusters associated with mesenchymal and hypoxic features. Higher CLDN1 expression correlated with shorter OS (HR 3, p=0.0023) and DFS (HR 2.14, p=0.02).
Conclusion. CLDN1 expression is heterogeneous in HNSCC and carries prognostic significance. It is highest in tumors with HPV-like biology and hypoxic environments, and lowest in immune-sensitive clusters. High CLDN1 is a negative prognostic factor and a promising therapeutic target. Anti-CLDN1 treatments could improve outcomes of CLDN1+ HNSCC patients, and combination therapies with ICIs might overcome resistance in CLDN1- cases. These findings support the need for clinical studies on anti-CLDN1 therapies.
DOI: 10.6084/m9.figshare.7300088.v1
title: Virtual Diabetes Consultation

description: The consultation varied in the doctor’s Character (hero or villain, i.e., good or poor bedside manner), Outcome/Ending (received a fellowship or sued for malpractice), and Depiction (a recorded video of a real human actor or of his 3D computer-animated double).
DOI: 10.6084/m9.figshare.19180853.v1
title: Supplementary Material for: The Socio-Demographics and Health Service Use of Opioid Overdose Decedents in Wales: A Cross-Sectional Data Linkage Study

description: <b><i>Background:</i></b> Fatal opioid overdose is a significant public health problem with increasing incidence in developed countries. This study aimed to describe demographic and service user characteristics of decedents of opioid overdose in Wales to identify possible targets for behaviour modification and life-saving interventions. <b><i>Methods:</i></b> A retrospective cross-sectional analysis was conducted of a census sample of opioid overdose-related deaths recorded between January 01, 2012, and October 11, 2018, in Wales. UK Office for National Statistics, Welsh Demographic Service, and National Health Service datasets were linked deterministically. Decedents’ circumstances of death, demographic characteristics, residency, and health service use were characterized over 3 years prior to fatal overdose using descriptive statistics. <b><i>Results:</i></b> In total, 638 people died of opioid overdose in Wales between January 01, 2012, and October 11, 2018, with an incidence rate of 3.04 per 100,000 people per year. Decedents were predominantly male (73%) and middle aged (median age 50 years). Fatal overdoses predominantly occurred in the community (93%) secondary to heroin (30%) or oxycodone derivative use (34%). In the 3 years prior to death, decedents changed address frequently (53%) but rarely moved far geographically. The majority of decedents had recently visited the emergency department (83%) or were admitted to the hospital (64%) prior to death. Only a minority had visited specialist drug services (32%). <b><i>Conclusions:</i></b> Deaths from opioid overdose typically occur in middle-aged men living peripatetic lifestyles. Victims infrequently visit specialist drug services but often attend emergency medical services. Emergency department-based interventions may therefore be important in prevention of opioid overdose fatalities in the community.
DOI: 10.6084/m9.figshare.3551550.v1
title: Appendix B. A figure showing two-dimensional profile likelihoods of ω and θ.

description: A figure showing two-dimensional profile likelihoods of ω and θ.
DOI: 10.6084/m9.figshare.14198540.v1
title: Supplementary Material for: Clinical Factors Associated with the Risk of Intracranial Aneurysm Rupture in Autosomal Dominant Polycystic Kidney Disease

description: <b><i>Background:</i></b> The occurrence of intracranial aneurysms is higher in patients with autosomal dominant polycystic kidney disease (ADPKD) than in the healthy population. However, research concerning the factors related to the risk of intracranial aneurysm rupture in patients with ADPKD is still insufficient. <b><i>Objectives:</i></b> The aim of the study was to investigate the prevalence of intracranial aneurysms and aneurysmal subarachnoid hemorrhage (SAH) and to analyze the systemic factors associated with high-risk aneurysms in patients with ADPKD. <b><i>Methods:</i></b> We screened patients who underwent cerebral angiography between January 2007 and May 2017 in the ADPKD registry. Patients were examined for the presence of intracranial aneurysms and subsequently reclassified into 3 groups based on the risk of aneurysmal rupture: the aneurysm-negative (group 1), low-risk aneurysm (group 2), or high-risk aneurysm (group 3). Various systemic factors were compared, and independent factors associated with high-risk aneurysms were analyzed. <b><i>Results:</i></b> Among the 926 patients, 148 (16.0%) had intracranial aneurysms and 11 (1.2%) had previous aneurysmal SAH. Patients with intracranial aneurysms were further classified into group 2 (low-risk aneurysms, 15.5%) or group 3 (high-risk aneurysms, 84.5%). Age (odds ratio [OR] 1.03, 95% confidence interval [CI] 1.01–1.05, <i>p</i> = 0.004), female sex (OR 3.13, 95% CI 1.94–5.0 6, <i>p</i> &lt; 0.001), dolichoectasia (OR 8.57, 95% CI 1.53–48.17, <i>p</i> = 0.015), and mitral inflow deceleration time (DT) (OR 1.01, 95% CI 1.00–1.01, <i>p</i> = 0.046) were independently associated with high-risk aneurysms, whereas hypercholesterolemia (OR 0.46, 95% CI 0.29–0.72, <i>p</i> = 0.001) was negatively associated. <b><i>Conclusion:</i></b> In the present study among patients with ADPKD, the prevalence of intracranial aneurysms and aneurysmal SAH was 16 and 1.2%, respectively. Age, female sex, dolichoectasia, and mitral inflow DT were positively associated with high-risk aneurysms, whereas hypercholesterolemia was negatively associated. A subsequent large-scaled longitudinal study is needed to define the plausibility of the clinical parameters.
DOI: 10.6084/m9.figshare.19703632.v1
title: Body size distributions of European Diptera, Coleoptera, Hymenoptera, and Strepsiptera

description: These data sets contain body size distributions of three major European insect orders based on literature data.
DOI: 10.6084/m9.figshare.21936033.v1
title: Literature Search for Life Cycle Assessment Studies on Packaging, Hemp, Mycelium, Mushroom, Expanded Polystyrene & EPS, and Packaging.

description: Life cycle assessment tools, methods, databases, indicators, or categories for Hemp, Mushroom, Mycelium, Expanded Polystyrene (EPS), and Packaging.
DOI: 10.17632/km2df7y256
title: 2023 CODEX HCC article dataset

description: single cell data table with cell type/phenotype, CN definition
DOI: 10.6084/m9.figshare.15059331.v1
title: Morandi et al Spot Pattern and Association Strength of Female Giraffes

description: This dataset includes Excel files with data from 411 adult female Masai giraffes (G. tippelskirchi). Individual giraffe data were collected over 7 years (Jan 2012- Oct 2018)
 in the Tarangire Ecosystem of northern Tanzania using photographic 
capture-resight techniques. Spot pattern traits were measured on the photographs using ImageJ software. The files include: (1) membership in adult female communities and mixed-sex supercommunities ["Communities"]; (2) list of edge weights between dyads["gbi_edgelist"]; (3) individual data on spot traits ["SpotData"]; and (4) summary of spot trait data ["SpotDataSummary"]. AID2019 is the individual animal identification. SC is supercommunities. AFC is adult female communities. Other variables are explained in the main text.<br>
DOI: 10.6084/m9.figshare.18391934.v1
title: Fate and effects of macro-and microplastics in coastal wetlands

description: The dataset was used to evaluate the stocks, fate, biological and biogeochemical effects of plastics in coastal wetlands with plastics abundance dataThe data were used for analyses in the following paper: Xiaoguang Ouyang, Carlos M. Duarte, Siu-Gin Cheung, Nora Fung-Yee Tam, Stefano Cannicci, Cecilia Martin, Hoi Shing Lo, Shing Yip Lee (2022) Fate and effects of macro-and microplastics in coastal wetland. Environmental Science & Technology. doi: 10.1021/acs.est.1c06732.
DOI: 10.6084/m9.figshare.26703034.v1
title: Additional file 6 of Comparative secretome analysis of Striga and Cuscuta species identifies candidate virulence factors for two evolutionarily independent parasitic plant lineages

description: Supplementary Material 6.
DOI: 10.6084/m9.figshare.28742870.v1
title: Data from: A leaf phenomics approach to estimating below-ground traits in North American Licorice

description: <i>Premise of the study:</i> Thousands of years of selective breeding has prioritized above-ground yield, with little regard for changes happening below-ground. Despite their central role in plant success and resilience, our knowledge of roots lags behind above-ground structures. Accurately phenotyping root traits is often labor-intensive, expensive, and destructive. In order to advance understanding of the fundamental biology underlying root systems, and to integrate hard-to-measure root traits into breeding programs, high-throughput non-destructive methods are required.<i>Methods: </i>This study uses American licorice (<i>Glycyrrhiza lepidota </i>Pursh.), a perennial legume with a rich ethnobotanical history, as a model to investigate root system phenotypes. We assess root traits across multiple populations, analyze relationships between above- and below-ground phenotypes, and test the use of multidimensional leaf traits, including spectral reflectance, in predicting root traits.<i>Key results: </i>American licorice displays significant variation in root traits across source populations and strong correlations between above- and below-ground traits. Leaf spectral reflectance and elemental composition show promise in modeling below-ground traits, though the isometric relationship between plant size and root traits complicates model accuracy. <i>Conclusions</i>: These findings demonstrate the use of high-dimensional leaf traits as a proxy for root traits, with potential applications for understanding foundational questions in plant biology and in breeding programs targeting the below-ground structures of perennial herbaceous species. Further optimization and larger studies are needed to improve predictive models.
DOI: 10.6084/m9.figshare.25437178.v1
title: 11 Phising Email Datasets

description: Cite the paper if you use this dataset:<br>1. A. I. Champa, M. F. Rabbi, and M. F. Zibran, “Why phishing emails escape detection: A closer look at the failure points,” in 12th Interna- tional Symposium on Digital Forensics and Security (ISDFS), 2024, pp. 1–6.2. A. I. Champa, M. F. Rabbi, and M. F. Zibran, “Curated datasets and feature analysis for phishing email detection with machine learning,” in 3rd IEEE International Conference on Computing and Machine Intelligence (ICMI), 2024, pp. 1–7.<br>Bibtext:1. @inproceedings{champa2024phishing, title={Why Phishing Emails Escape Detection: A Closer Look at the Failure Points}, author={Champa, Arifa I and Rabbi, Fazle and Zibran, Minhaz F}, booktitle={2024 12th International Symposium on Digital Forensics and Security (ISDFS)}, pages={1--6}, year={2024}, organization={IEEE}}<br>2. @inproceedings{champa2024curated, title={Curated Datasets and Feature Analysis for Phishing Email Detection with Machine Learning}, author={Champa, Arifa I and Rabbi, Md Fazle and Zibran, Minhaz F}, booktitle={3rd IEEE International Conference on Computing and Machine Intelligence (ICMI)}, pages = {1--7}, year={2024}}
DOI: 10.6084/m9.figshare.4295360.v8
title: CO Flood 2013 - Weeks 1 & 2 data

description: Data from the Boulder flood 2013.<br>
DOI: 10.6084/m9.figshare.16896997.v1
title: February 2021 Covid-19 Twitter Streaming Dataset

description: The file contains Tweet IDs* for COVID-19 related tweets collected in <b>February, 2021</b> from <b>Twitter's COVID-19 Streaming Endpoint </b>via a custom script developed by the <b>Social Media Lab (https://socialmedialab.ca/)</b>.<br>Visit <b>our interactive dashboard at https://stream.covid19misinfo.org</b>/ for a preview and some general stats about this COVID-19 Twitter streaming dataset.<br>For more info about <b>Twitter's COVID-19 Streaming Endpoint</b>, visit <b>https://developer.twitter.com/en/docs/labs/covid19-stream/overview</b><br><b>Note</b>: In accordance with Twitter API Terms, the dataset only includes Tweet IDs (as opposed to the actual tweets and associated metadata). To recollect tweets contained in this dataset, you can use programs such as Hydrator (https://github.com/DocNow/hydrator/) or the Python library Twarc (https://github.com/DocNow/twarc/).
DOI: 10.6084/m9.figshare.3528242.v1
title: Appendix A. Size of canopy seed banks for serotinous species at four shrubland sites near Eneabba, southwestern Australia.

description: Size of canopy seed banks for serotinous species at four shrubland sites near Eneabba, southwestern Australia.
DOI: 10.6084/m9.figshare.7935614.v1
title: gVCF_NA20321

description: 1000 Genomes gVCF mapped to hs37d5 for NA20321. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.5522/04/12023025.v1
title: Data of craniopharyngioma management, recurrence and endocrine outcomes

description: Craniopharyngiomas are neoplasms of the sellar and parasellar region which develop from the epithelium of the primordial craniopharyngeal canal (Rathke's pouch). Despite their WHO classification as type 1 tumours, craniopharyngiomas are associated with multiple comorbidities including hypopituitarism, obesity and somnolence <sup> </sup>In this clinical study, we investigated the management and outcomes of a large cohort of patients with craniopharyngioma, both childhood and adult-onset, from three tertiary endocrine centres in the United Kingdom. The primary aim of this study was to examine temporal trends in the management of craniopharyngioma and their impact on long-term patient’s endocrine function.<br>
DOI: 10.6084/m9.figshare.23271833.v1
title: Data and Code for "Visuomotor feedback tuning in the absence of visual error information"

description: This is the data and matlab code to prepare the figures for the manuscript "Visuomotor feedback tuning in the absence of visual error information" by Sae Franklin and David Franklin. <br> The three main programs to obtain the analysis are: df_analyze_RJ2_channeltrials_2.m df_analyze_RJ2_fieldtrials.m df_analyze_RJ2_visualpert.m<br> which will generate each of the figures in the results section of the manuscript.<br> Data files (.mat) are found within the datafiles.zip Additional code is found within helpfunctions.zip <br>
DOI: 10.6084/m9.figshare.19572040.v1
title: Supplementary Material for: Poor Treatment Outcomes with Second-Line Chemotherapy in Advanced Synovial Sarcoma

description: Introduction: Synovial sarcoma predominantly affects adolescents and young adults. Doxorubicin with or without ifosfamide therapy is the standard first-line treatment for unresectable or metastatic synovial sarcoma. However, there is no standard second-line chemotherapy regimen. The purpose of the current study was to evaluate the outcomes of second-line chemotherapy for patients with synovial sarcoma. Methods: We retrospectively evaluated the outcomes of 61 patients with unresectable or metastatic synovial sarcoma who had received first-line chemotherapy at our institution between 1997 and 2017. Patients who received second-line chemotherapy were included in the analysis. Outcomes of the chemotherapy were evaluated. Results: Among the 61 patients treated with first-line chemotherapy, we identified 32 patients who received second-line chemotherapy. Most patients (62.5%) were under 40 years of age. Regarding second-line chemotherapy regimens, 6 (18.8%) patients were treated with doxorubicin with/without ifosfamide, 6 (18.8%) with ifosfamide and etoposide, 4 (12.5%) with docetaxel and gemcitabine, 5 (15.6%) with pazopanib, 2 (6.2%) with trabectedin, and 1 (3.1%) with eribulin. The overall response rate according to the Response Evaluation Criteria in Solid Tumors for all patients was 9.4%. Eleven patients (34.3%) achieved disease-control for &gt; 6 months. The median follow-up duration was 15.2 months. The 1-year progression-free and overall survival rates were 33.1% and 67.1%, respectively. Conclusion: Our exploratory study revealed that the response rate of second-line chemotherapy regimens for patients with synovial sarcoma was 9.4%. Therefore, there is an urgent need to develop more active therapeutic regimens for synovial sarcomas.
DOI: 10.6084/m9.figshare.28770587.v1
title: Transect walk data collected in English agroforestry and monoculture fields.

description: Data on <b>bumblebee</b>, <b>solitary</b> <b>bee</b>, <b>hoverfly</b>, and <b>butterfly</b> observations. Data were collected on standardised transect walks between 2011-2013 at six agroforestry sites in England, in paired agroforestry and monoculture fields. All farmers gave approval for data collection at their sites.Columns A-AA give details of sites, dates of visits, position on transect, and environmental variables.Columns AB-BS give abundance counts for bees, butterflies and hoverflies. Bumblebees and butterflies were recorded at the level of individual species, apart from Bombus terrestris and Bombus lucorum which were recorded as one aggregate species, and Pieris rapae & Pieris brassicae which were also recorded as one aggregate species. Solitary bees and hoverflies were not identified to species.Below are details of column names where their content is not immediately obvious:<i>visit</i> - we sequentially numbered visits to each site.<i>jdate</i> - number of days since 1st March<i>landuse</i> - a, arable; p, pasture<i>treatment</i> - AF, agroforestry; MC, monoculture<i>alleywidth</i> - distance between tree rows, in meters<i>alleylength</i> - the length of tree rows, in meters<i>hedg_dist</i> - the shortest distance between the transect and the nearest hedgerow<i>boundSR_all</i> - plant species richness in ﬁeld boundaries (both hedges and margins)<i>boundSR_ip</i> - the species richness of insect-pollinated plants in ﬁeld boundaries (both hedges and margins)<i>bound_area</i> - the area covered by the ﬁeld boundaries<i>n_hedg_bound</i> - the number of hedged ﬁeld boundaries<i>n_hedg_trees</i> - the number of trees in field boundaries<i>snh</i> - the percentage of semi-natural habitat (SNH) in a 1 km buﬀer around ﬁeld perimeters<i>tran_pos</i> - whether that part of the transect was at the edge or the centre of an alley<i>tran_dist</i> - each transect was separated into 25 meter sections, and this variable specifies the section<i>start_time</i> / <i>end_time</i> - the start and end of the transect. Where it was necessary to stop to catch and identify a bee, the transect walk was paused. This means that transects are not all of equal time length, although time actually spent walking and searching for pollinators was standardised.<i>sun</i> - the percentage of the transect that was sunny (time estimated during transect)<i>wind</i> - how windy it was during the transect, using Beaufort scale values<i>beeact</i> / <i>buttact</i> - a subjective indication of how active bees / butterflies were during the transect ('low', 'medium' or 'high' activity)Columns giving butterfly family names (e.g., Nymphalidae) are row sums of observations of species in that family.