cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/94c53y
title: Phytoseiid mites of Rodrigues Island (Acari: Mesostigmata)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kreiter, Serge, Abo-Shnaf, Reham I. A. (2020): Phytoseiid mites of Rodrigues Island (Acari: Mesostigmata). Acarologia 60 (2): 449-468, DOI: 10.24349/acarologia/20204376
DOI: 10.15468/kpvraw
title: On the identity of Trochosa hispanica (Araneae, Lycosidae), with notes on the synonymy of West Palaearctic “ Trochosa ” species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Marusik, Yuri M., Nadolny, Anton A. (2020): On the identity of Trochosa hispanica (Araneae, Lycosidae), with notes on the synonymy of West Palaearctic “ Trochosa ” species. Zootaxa 4859 (1): 56-80, DOI: https://doi.org/10.11646/zootaxa.4859.1.2
DOI: 10.15468/brw3gs
title: Taxonomic revision of the P. chartergoides species-group of the genus Protopolybia Ducke, 1905 (Hymenoptera: Vespidae, Polistinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dos Santos Junior, José N. A., Silveira, Orlando T., Carpenter, James M. (2020): Taxonomic revision of the P. chartergoides species-group of the genus Protopolybia Ducke, 1905 (Hymenoptera: Vespidae, Polistinae). Zootaxa 4858 (4): 542-554, DOI: https://doi.org/10.11646/zootaxa.4858.4.4
DOI: 10.15468/psvhud
title: A new species and new record of Agistemus Summers (Acari: Stigmaeidae) associated withCapsicum annuum L. var. glabriusculum (Solanaceae) from Northeastern of Mexico

description: This dataset contains the digitized treatments in Plazi based on the original journal article Monjarás-Barrera, José Irving, Silva, Guilherme Liberato Da, Chacón-Hernández, Julio Cesar, Silva, Onilda Santos Da, Ferla, Noeli Juarez, Johann, Liana (2020): A new species and new record of Agistemus Summers (Acari: Stigmaeidae) associated withCapsicum annuum L. var. glabriusculum (Solanaceae) from Northeastern of Mexico. Acarologia 60 (2): 470-480, DOI: 10.24349/acarologia/20204378
DOI: 10.15468/d3w9vc
title: Paraleptopentacta, a new Mediterranean and north-west Atlantic sea cucumber genus, with the first record of P. tergestina n. comb. (Echinodermata Dendrochirotida: Cucumariidae) from the north-western Algerian coast

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mezali, Karim, Thandar, Ahmed S., Khodja, Ihcene (2020): Paraleptopentacta, a new Mediterranean and north-west Atlantic sea cucumber genus, with the first record of P. tergestina n. comb. (Echinodermata Dendrochirotida: Cucumariidae) from the north-western Algerian coast. Zootaxa 4860 (2): 199-210, DOI: https://doi.org/10.11646/zootaxa.4860.2.3
DOI: 10.5281/zenodo.4537482
title: Drivers of linkage disequilibrium across a species' geographic range

description: Data from "Drivers of linkage disequilibrium across a species’ geographic range" by Lucek & Willi The files contain all LD estimates used for the analysis in the respective study estimated for genic and intergenic regions of the Arabidopsis lyrata genome. 3 files contain the LD estimates from Pool-Seq data (Genbank project PRJEB19338) using the software Ldx https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0048588 : genic_ld.txt contains the following columns: GeneID =&gt; ID of the respective gene based on the V2 annotation of A. lyrata<br> Scaffold =&gt; Scaffold ID (1-8)<br> Population =&gt; Population ID (see Table S1 in the study)<br> UncorrectedLD =&gt; LD estimates from Ldx<br> Distance_between_LD_pairs =&gt; Distance in bps between SNPs used to calculate LD<br> Fis =&gt; Inbreeding coefficient (Fis) based on microsattelite estimates<br> Expansion_distance =&gt; Range expansion distance (in km) taken from Willi et al. 2018 Mol Biol Evol<br> Genetic_cluster =&gt; Phylogenetic cluster (1= East; 2= West)<br> LD =&gt; Distance corrected LD used for all analyses<br> Average_distance_to_nearest_gene =&gt; average distance to the nearest gene as an estimate for gene density. LD_genic_with_SIFT_annotations.txt<br> A subset of genic_ld.txt for which SNPs were annotated by SIFT4G https://www.nature.com/articles/nprot.2015.123<br> The file contains one additional column:<br> SIFT_comparison =&gt; 3 types of comparisons, T_T (between Tolerated and Tolerated SNPs), T_D (between Tolerated and Deleterious SNPs), D_D (between Deleterious and Deleterious SNPs) intergenic_ld.txt contains the following columns: Scaffold =&gt; Scaffold ID (1-8)<br> Population =&gt; Population ID (see Table S1 in the study)<br> UncorrectedLD =&gt; LD estimates from Ldx<br> Distance_between_LD_pairs =&gt; Distance in bps between SNPs used to calculate LD<br> Fis =&gt; Inbreeding coefficient (Fis) based on microsattelite estimates<br> Expansion_distance =&gt; Range expansion distance (in km) taken from Willi et al. 2018 Mol Biol Evol<br> Genetic_cluster =&gt; Phylogenetic cluster (1= East; 2= West)<br> LD =&gt; Distance corrected LD used for all analyses<br> Size_of_intergenic_region_in_bps =&gt; size in bps of each intergenic region 2 files contain the LD estimates from individually re-sequenced genomes (Genbank project PRJEB30473 ) using the software mlrho https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0048588 : https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-294X.2009.04482.x Each file contains the correlation of zygosity estimated for each individual for each bp distance as distinct columns, either for all genic (genic_mlrho.txt) or intergenic (intergenic_mlrho.txt) regions. All values were scaled by genome-wide theta.
DOI: 10.5281/zenodo.4537481
title: Drivers of linkage disequilibrium across a species' geographic range

description: Data from "Drivers of linkage disequilibrium across a species’ geographic range" by Lucek & Willi The files contain all LD estimates used for the analysis in the respective study estimated for genic and intergenic regions of the Arabidopsis lyrata genome. 3 files contain the LD estimates from Pool-Seq data (Genbank project PRJEB19338) using the software Ldx https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0048588 : genic_ld.txt contains the following columns: GeneID =&gt; ID of the respective gene based on the V2 annotation of A. lyrata<br> Scaffold =&gt; Scaffold ID (1-8)<br> Population =&gt; Population ID (see Table S1 in the study)<br> UncorrectedLD =&gt; LD estimates from Ldx<br> Distance_between_LD_pairs =&gt; Distance in bps between SNPs used to calculate LD<br> Fis =&gt; Inbreeding coefficient (Fis) based on microsattelite estimates<br> Expansion_distance =&gt; Range expansion distance (in km) taken from Willi et al. 2018 Mol Biol Evol<br> Genetic_cluster =&gt; Phylogenetic cluster (1= East; 2= West)<br> LD =&gt; Distance corrected LD used for all analyses<br> Average_distance_to_nearest_gene =&gt; average distance to the nearest gene as an estimate for gene density. LD_genic_with_SIFT_annotations.txt<br> A subset of genic_ld.txt for which SNPs were annotated by SIFT4G https://www.nature.com/articles/nprot.2015.123<br> The file contains one additional column:<br> SIFT_comparison =&gt; 3 types of comparisons, T_T (between Tolerated and Tolerated SNPs), T_D (between Tolerated and Deleterious SNPs), D_D (between Deleterious and Deleterious SNPs) intergenic_ld.txt contains the following columns: Scaffold =&gt; Scaffold ID (1-8)<br> Population =&gt; Population ID (see Table S1 in the study)<br> UncorrectedLD =&gt; LD estimates from Ldx<br> Distance_between_LD_pairs =&gt; Distance in bps between SNPs used to calculate LD<br> Fis =&gt; Inbreeding coefficient (Fis) based on microsattelite estimates<br> Expansion_distance =&gt; Range expansion distance (in km) taken from Willi et al. 2018 Mol Biol Evol<br> Genetic_cluster =&gt; Phylogenetic cluster (1= East; 2= West)<br> LD =&gt; Distance corrected LD used for all analyses<br> Size_of_intergenic_region_in_bps =&gt; size in bps of each intergenic region 2 files contain the LD estimates from individually re-sequenced genomes (Genbank project PRJEB30473 ) using the software mlrho https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0048588 : https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-294X.2009.04482.x Each file contains the correlation of zygosity estimated for each individual for each bp distance as distinct columns, either for all genic (genic_mlrho.txt) or intergenic (intergenic_mlrho.txt) regions. All values were scaled by genome-wide theta.
DOI: 10.6084/m9.figshare.13951775
title: PSY-COVID database 1 (Colombia)

description: The following document contains the database of the PSY-COVID study in Colombia. These data were collected during the first wave of the COVID-19 outbreak (from May 20th to June 20th, 2020). <br><br>More information on the methodological details of this study can be found at the following link: <br><br>https://www.researchgate.net/project/PSY-COVID-COLOMBIA
DOI: 10.6084/m9.figshare.13951775.v2
title: PSY-COVID database (Colombia)

description: The following document contains the database of the PSY-COVID study in Colombia. These data were collected during the first wave of the COVID-19 outbreak (from May 20th to June 20th, 2020). More information on the methodological details of this study can be found at the following link:<br><br>https://www.researchgate.net/publication/343080748_Mental_health_effects_of_the_COVID-19_pandemic_on_the_Colombian_population
DOI: 10.5517/ccdc.csd.cc23hs5l
title: CCDC 1951579: Experimental Crystal Structure Determination

description: Related Article: Xiumei Du, Rufen Zhang, Qianli Li, Shuang Cheng, Yongxin Li, Jing Ru, Chunlin Ma|2021|J.Organomet.Chem.|935|121654|doi:10.1016/j.jorganchem.2020.121654
DOI: 10.5517/ccdc.csd.cc23hs6m
title: CCDC 1951580: Experimental Crystal Structure Determination

description: Related Article: Xiumei Du, Rufen Zhang, Qianli Li, Shuang Cheng, Yongxin Li, Jing Ru, Chunlin Ma|2021|J.Organomet.Chem.|935|121654|doi:10.1016/j.jorganchem.2020.121654
DOI: 10.5517/ccdc.csd.cc23hs7n
title: CCDC 1951581: Experimental Crystal Structure Determination

description: Related Article: Xiumei Du, Rufen Zhang, Qianli Li, Shuang Cheng, Yongxin Li, Jing Ru, Chunlin Ma|2021|J.Organomet.Chem.|935|121654|doi:10.1016/j.jorganchem.2020.121654
DOI: 10.5517/ccdc.csd.cc23hs8p
title: CCDC 1951582: Experimental Crystal Structure Determination

description: Related Article: Xiumei Du, Rufen Zhang, Qianli Li, Shuang Cheng, Yongxin Li, Jing Ru, Chunlin Ma|2021|J.Organomet.Chem.|935|121654|doi:10.1016/j.jorganchem.2020.121654
DOI: 10.5517/ccdc.csd.cc23hs9q
title: CCDC 1951583: Experimental Crystal Structure Determination

description: Related Article: Xiumei Du, Rufen Zhang, Qianli Li, Shuang Cheng, Yongxin Li, Jing Ru, Chunlin Ma|2021|J.Organomet.Chem.|935|121654|doi:10.1016/j.jorganchem.2020.121654
DOI: 10.17036/researchdata.aston.ac.uk.00000495
title: Dataset for Analysis of lipid composition reveals mechanisms of ethanol tolerance in the model yeast Saccharomyces cerevisiae
DOI: 10.5517/ccdc.csd.cc23hsbr
title: CCDC 1951584: Experimental Crystal Structure Determination

description: Related Article: Xiumei Du, Rufen Zhang, Qianli Li, Shuang Cheng, Yongxin Li, Jing Ru, Chunlin Ma|2021|J.Organomet.Chem.|935|121654|doi:10.1016/j.jorganchem.2020.121654
DOI: 10.5517/ccdc.csd.cc23hscs
title: CCDC 1951585: Experimental Crystal Structure Determination

description: Related Article: Xiumei Du, Rufen Zhang, Qianli Li, Shuang Cheng, Yongxin Li, Jing Ru, Chunlin Ma|2021|J.Organomet.Chem.|935|121654|doi:10.1016/j.jorganchem.2020.121654
DOI: 10.18112/openneuro.ds002366.v1.1.0
title: Emotion regulation in the Ageing Brain, University of Reading, BBSRC
DOI: 10.15468/thb9d8
title: A new Hyphessobrycon (Characiformes: Characidae) of the Hyphessobrycon heterorhabdus species-group from the Central Amazon basin, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Faria, Tiago C., Bastos, Douglas A., Zuanon, Jansen, Lima, Flávio C. T. (2020): A new Hyphessobrycon (Characiformes: Characidae) of the Hyphessobrycon heterorhabdus species-group from the Central Amazon basin, Brazil. Zootaxa 4859 (2): 275-284, DOI: https://doi.org/10.11646/zootaxa.4859.2.6
DOI: 10.15468/u2dtnc
title: Revision of the Ipsviciidae of the Late Triassic of Queensland (Hemiptera Cicadomorpha: Scytinopteroidea)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lambkin, Kevin J. (2020): Revision of the Ipsviciidae of the Late Triassic of Queensland (Hemiptera Cicadomorpha: Scytinopteroidea). Zootaxa 4860 (4): 503-520, DOI: https://doi.org/10.11646/zootaxa.4860.4.2
DOI: 10.6084/m9.figshare.13952492
title: Supplemental Table 1

description: Glut5 colitis
DOI: 10.6084/m9.figshare.13952492.v2
title: Supplemental Table 1

description: Glut5 colitis
DOI: 10.6084/m9.figshare.13952492.v1
title: Supplemental Table 1

description: Glut5 colitis
DOI: 10.15468/gtexas
title: A new species of Toxicocalamus (Squamata: Elapidae) from Papua New Guinea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kraus, Fred (2020): A new species of Toxicocalamus (Squamata: Elapidae) from Papua New Guinea. Zootaxa 4859 (1): 127-137, DOI: https://doi.org/10.11646/zootaxa.4859.1.5
DOI: 10.15468/az6xur
title: Description of larvae of Japanese Macronychini (Coleoptera: Elmidae: Elminae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Hayashi, Masakazu, Kamite, Yuuki (2020): Description of larvae of Japanese Macronychini (Coleoptera: Elmidae: Elminae). Zootaxa 4859 (2): 195-227, DOI: https://doi.org/10.11646/zootaxa.4859.2.2
DOI: 10.15468/kjjkpc
title: Description of a new species of Smithophis Giri et al. 2019 (Serpentes: Colubridae Natricinae) from Arunachal Pradesh, India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Das, Abhijit, Deepak, V., Captain, Ashok, Wade, Edward O. Z., Gower, David J. (2020): Description of a new species of Smithophis Giri et al. 2019 (Serpentes: Colubridae Natricinae) from Arunachal Pradesh, India. Zootaxa 4860 (2): 267-283, DOI: https://doi.org/10.11646/zootaxa.4860.2.8
DOI: 10.15468/4dnf2w
title: The order Tethyida (Porifera) in California: taxonomy, systematics, and the first member of the family Hemiasterellidae in the Eastern Pacific

description: This dataset contains the digitized treatments in Plazi based on the original journal article Turner, Thomas L. (2020): The order Tethyida (Porifera) in California: taxonomy, systematics, and the first member of the family Hemiasterellidae in the Eastern Pacific. Zootaxa 4861 (2): 211-231, DOI: https://doi.org/10.11646/zootaxa.4861.2.3
DOI: 10.15468/ugp875
title: A new species of the genus Achalinus (Squamata: Xenodermatidae) from southeastern Yunnan Province, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Li, Ke, Yu, Min, Wu, Ya-Yong, Liao, Lin-Hong, Tang, Kui, Liu, Qin, Guo, Peng (2020): A new species of the genus Achalinus (Squamata: Xenodermatidae) from southeastern Yunnan Province, China. Zootaxa 4860 (1): 116-128, DOI: https://doi.org/10.11646/zootaxa.4860.1.6
DOI: 10.15468/q7rc3p
title: Thraulodes marianoi sp. nov., a remarkable new species of mayfly (Ephemeroptera Leptophlebiidae) with dark wings from the southern Brazilian Atlantic Forest

description: This dataset contains the digitized treatments in Plazi based on the original journal article Silva, Vinícius De Assis, Salles, Frederico Falcão, Pinto, Ângelo Parise (2020): Thraulodes marianoi sp. nov., a remarkable new species of mayfly (Ephemeroptera Leptophlebiidae) with dark wings from the southern Brazilian Atlantic Forest. Zootaxa 4860 (1): 92-100, DOI: https://doi.org/10.11646/zootaxa.4860.1.4
DOI: 10.6084/m9.figshare.13668767
title: Agri-environment nectar chemistry suppresses parasite social epidemiology in an important pollinator

description: Raw data for bumblebee individual and colony experiments
DOI: 10.6084/m9.figshare.13668767.v1
title: Agri-environment nectar chemistry suppresses parasite social epidemiology in an important pollinator

description: Raw data for bumblebee individual and colony experiments
DOI: 10.15468/t8jkvk
title: Revision of Australian species of the dung beetle genus Lepanus (Coleoptera: Scarabaeidae: Scarabaeinae): review of the L. ustulatus, L. storeyi, and L. nitidus species groups and description of eight new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gunter, Nicole L., Weir, Thomas A. (2021): Revision of Australian species of the dung beetle genus Lepanus (Coleoptera: Scarabaeidae: Scarabaeinae): review of the L. ustulatus, L. storeyi, and L. nitidus species groups and description of eight new species. Zootaxa 4923 (1): 1-66, DOI: https://doi.org/10.11646/zootaxa.4923.1.1
DOI: 10.15468/cdhx7t
title: Distributional and taxonomic notes on the crab spider genus Talaus Simon, 1886 with description of a new species (Araneae: Thomisidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Benjamin, Suresh P. (2020): Distributional and taxonomic notes on the crab spider genus Talaus Simon, 1886 with description of a new species (Araneae: Thomisidae). Zootaxa 4858 (3): 405-416, DOI: https://doi.org/10.11646/zootaxa.4858.3.6
DOI: 10.15468/88pe2s
title: Review of the Central Asian species of Phthorarcha Meyrick (Geometridae Alsophilinae) with description of a new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kostjuk, Igor, Mironov, Vladimir G., Viidalepp, Jaan (2020): Review of the Central Asian species of Phthorarcha Meyrick (Geometridae Alsophilinae) with description of a new species. Zootaxa 4861 (2): 232-240, DOI: https://doi.org/10.11646/zootaxa.4861.2.4
DOI: 10.15468/5s5ec5
title: Pomacentrus bangladeshius, a new species of damselfish (Perciformes, Pomacentridae) from Saint Martin’s Island, Bangladesh

description: This dataset contains the digitized treatments in Plazi based on the original journal article Habib, Kazi Ahsan, Islam, Md Jayedul, Nahar, Najmun, Neogi, Amit Kumer (2020): Pomacentrus bangladeshius, a new species of damselfish (Perciformes, Pomacentridae) from Saint Martin’s Island, Bangladesh. Zootaxa 4860 (3): 413-424, DOI: https://doi.org/10.11646/zootaxa.4860.3.6
DOI: 10.17632/7fvk78fgv4.1
title: Data Panel Regression Flypaper Effect in New Regional Autonomy

description: List of last research about Data Panel Regression, Flypaper Effect and Indonesia Regulation.
DOI: 10.17632/p6m666p4kb.2
title: Acoustic Doppler Velocimetry (ADV) data on flow-vegetation interaction in partly vegetated channels with flexible and rigid vegetation

description: This dataset contains measurements of 3D instantaneous flow velocity with acoustic Doppler velocimetry (ADV) in partly vegetated channels with natural-like foliated flexible vegetation and with rigid cylinders. Experiments with natural-like vegetation (F experiments) were carried out at the Environmental Hydraulics Lab of Aalto University (Espoo, Finland), while experiments with rigid cylinders (R experiments) were performed at the Laboratory of Hydraulics of University of Naples Federico II (Naples, Italy). Velocity measurements were carried out for steady, fully developed turbulent flows in partly vegetated channels, along mid-depth transversal transects. 3D instantaneous point velocity was measured with ADV at 200 and 100 Hz, for duration of 120 and 240 s, for F and R experiments, respectively. For each test series three conditions were investigated: F1, F2 and F3, with increasing vegetation reconfiguration (for F experiments); and R1, R2 and R3, with decreasing cylinder density (for R experiments). The ADV measurements for each test run and the video recordings of plants motion (for F experiments) are included in this dataset. The detailed description of the laboratory setup, the experimental conditions, the measurement technique, together with additional information on the provided data are included in the data article linked to this dataset (https://doi.org/10.1016/j.dib.2020.106080).
DOI: 10.17632/vbpzxvmnfy.1
title: Paradoxical neutrophilic dermatosis induced by biologics and immunosuppressive drugs: A systematic review

description: Cases of biological and immunosuppressive drugs induced-Sweet syndrome and -pyoderma gangrenosum have been increasingly reported in the literature. We reviewed all reported demographical, clinical, histological, pathological and therapeutic features of paradoxical neutrophilic dermatosis secondary to biologics and immunosuppressant drugs. 42 articles were included, with a total of 84 patients. Twenty-nine patients (34.5%) developed paradoxical Sweet syndrome with a mean age of 39 and a male to female ratio of 1.4:1, most incriminated drug being azathioprine (62%). Fifty-five patients (65%) experienced paradoxical pyoderma gangrenosum with a mean age of 35 and a male to female ratio of 1:2.5, most incriminated drug being rituximab (76%). Clinical presentations of paradoxical neutrophilic reaction were mostly cutaneous with rare systemic involvement. Most regressed with drug discontinuation alone, and only a minority required the addition of topical or systemic steroids or cyclosporine or antibiotics. Paradoxical neutrophilic dermatosis secondary to biologics and immunosuppressant should not be underestimated especially with the increasing use of these drugs.
DOI: 10.17632/yz5rrmvrgd.1
title: Calculations dataset of diatomic systems based on van der Waals density functional method

description: This dataset provides results obtained by first-principles calculations on diatomic systems and isolated systems based on SCAN+rVV10. All diatomic systems containing atomic species from H (Z=1) to Ra (Z=88) are considered. Calculations not only for diatomic systems but also for isolated systems are uploaded for evaluating binding energy, . =========================== raw_vasp_output_files [zip files (diatomic_db_raw.zip, isolated_db_raw.zip)] These zip files contain raw output files (OUTCAR and vasprun.xml) of VASP calculations. =========================== parsed_dataset [Python pickle files (diatomic_df.pickle, isolated_df.pickle) and csv files (diatomic_df.csv, isolated_df.csv)] These files contain tables of typical physical values files obtained from the VASP calculations. The python pickle files requires python environment with pandas and pymatgen. Files "*_df.pickle" and "*_df_protocol3.pickle" contains the same data, but they were saved with python pickle protocol 5 and 3, respectively. =========================== codes [diatomic_parser.zip] Simple python scripts for parsing raw VASP output files and plotting heatmaps and a scatter plot.