cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.6hdr7srcd
title: Plastic film usage and mulching area from 1992 to 2022

description: Agricultural plastic mulch films are a major source of plastic pollution
 of croplands. In China, which uses about 68% of the plastic mulch film
 produced globally (ca. 1.4 million tonnes y-1), soils have been heavily
 contaminated with mulch fragments. Here, we collected a national dataset
 of macroplastic residues (&gt; 5 mm) in soil, including 3145 sampling
 sites, and provincial plastic film usage from 1992 to 2019 in China, and
 we established a linear model between the residue amount and historical
 cumulative usage within each province. We quantified the amount of plastic
 mulch residues in Chinese croplands on a national scale during the past 30
 years and predicted plastic pollution until 2050. Our results reveal the
 total national amount of plastic mulch residue in 2020 to be 2.07 million
 tonnes with a 95% CI of [1.67, 2.58]. This accumulated amount of plastic
 in Chinese soils roughly equals the annual amount of plastic films used
 globally (2.08 million tonnes in 2018), which is about 8% of the national
 historical used plastic mulch film (27.3 million tonnes) remains in soil
 as legacy plastic. Plastic concentrations in Chinese croplands range from
 7.7 kg ha-1 in Anhui to 399 kg ha-1 in Xinjiang, with an average value of
 119 kg ha-1 (equivalent to 0.03 g kg-1 soil). We predict that the total
 amount and average concentration of plastic residues in Chinese croplands
 will reach 6.24 million tonnes and 357 kg ha-1 (equivalent to 0.1 g kg-1
 soil) in 2050 under current plastic usage. There is an urgent need for
 regulatory actions to control plastic pollution in Chinese agriculture.
description: # Plastic film usage and mulching area from 1992 to 2022 Dataset DOI:
 [10.5061/dryad.6hdr7srcd](10.5061/dryad.6hdr7srcd) ## Description of the
 data and file structure The dataset is mainly used to understand the
 temporal and spatial distribution of plastic film use and residue in
 China. Each row of the Excel represents the plastic film usage and
 mulching area for each province in China from 1992 to 2022, while each
 column indicates the data for a specific year regarding plastic film usage
 or mulching area for all provinces. In Data S2, the concentration of some
 mulch film residues is marked in red text as "The providers do not
 agree to release" because the providers of this part of the data do
 not agree to make it public. If you need it, you can apply to us for
 access. We will decide whether to share this part of the data after
 discussion. ### Files and variables #### File: Data\_S1.zip
 **Description:** Data S1 includes data on the usage (thousand tonnes) and
 mulching area (thousand hectares) of plastic mulch film for 33
 provincial-level administrative regions in China from 1992 to 2022,
 excluding Hong Kong, Macau, and Taiwan. ## Access information Data was
 derived from the following sources: *
 [https://www.stats.gov.cn/](https://www.stats.gov.cn/)
DOI: 10.15468/dl.tnfhy5
title: Occurrence Download

description: A dataset containing 1786 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liljeborgia pallida",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1786 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004389-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r4npqr
title: Occurrence Download

description: A dataset containing 74613 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sprattus fuegensis",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 74613 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004352-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17469070
title: Dataset for the paper: Test Behaviors, Not Methods! Detecting Tests Obsessed by Methods

description: Dataset for the paper: Test Behaviors, Not Methods! Detecting Tests Obsessed by Methods, ICPC 2026, Early Research Achievements (ERA)

This dataset contains information about all tests and tests obsessed by methods.

all tests columns: test_name, methods, paths, calls, smell_candidate

tests obsessed by methods columns: test_name, library, methods, paths, TP, has_comment
DOI: 10.5281/zenodo.17469069
title: Dataset for the paper: Test Behaviors, Not Methods! Detecting Tests Obsessed by Methods

description: Dataset for the paper: Test Behaviors, Not Methods! Detecting Tests Obsessed by Methods, ICPC 2026, Early Research Achievements (ERA)

This dataset contains information about all tests and tests obsessed by methods.

all tests columns: test_name, methods, paths, calls, smell_candidate

tests obsessed by methods columns: test_name, library, methods, paths, TP, has_comment
DOI: 10.5061/dryad.41ns1rnsc
title: Data from: The rapid recovery of a Caatinga dry forest is mediated by disturbance-adapted species

description: Tropical dry forest regeneration in human-modified landscapes may be more
 complex than previously proposed since the remaining forest is permanently
 exposed to a myriad of human disturbances. We examined the regeneration of
 a Caatinga dry forest in the context of the extraction of forest products
 and livestock production to reveal patterns and potential mechanisms
 driving forest regeneration in a human-modified landscape. Seed, seedling,
 and adult assemblages from woody species were sampled across a forest
 chronosequence and old-growth forest stands. Community-level metrics were
 related to the age of regenerating forest stands, precipitation, and
 human-chronic disturbances via linear and non-linear statistical models
 and multivariate analyses. Overall, regenerating and old-growth forest
 stands exhibited similar stem abundance and species richness across all
 ontogenetic stages. Little directional change occurred along forest
 regeneration, with a negligible role played by forest stand age,
 precipitation, and chronic human disturbance. Moreover, species
 exclusively recorded as adults or seeds were mostly dispersed by animals,
 indicating that several species fail in either dispersing or recruiting
 due to human disturbances (e.g., defaunation) and harsh environmental
 conditions. In short, the apparent fast recovery of Caatinga is due to a
 low diversity and the predominance of species abiotically dispersed and
 able to resprout, suggesting a human-driven degradation trajectory rather
 than a natural condition.
description: # Data from: The rapid recovery of a Caatinga dry forest is mediated by
 disturbance-adapted species Dataset DOI:
 [10.5061/dryad.41ns1rnsc](10.5061/dryad.41ns1rnsc) ## Description of the
 data and file structure The data was collected in Catimbau National Park,
 a Seasonally Dry Tropical Forest in Brazil (Caatinga). Each plot has
 20x50m, where seeds, seedlings, and adults were sampled. We distributed 15
 plots in regeneration patches with different fallow periods and 20 plots
 in mature plots (&gt;100 years old). ### Files and variables #### File:
 data.xls **Description:** three species names, X plot matrices: seeds,
 seedlings, and adults ##### Variables Sheet 1 (Seed) - Community matrix of
 seeds. This is a community matrix of seeds, showing the abundance of
 different seed species found across various plots or sampling points. This
 community matrix documents how many seeds of each species were found in
 each plot, providing a detailed snapshot of seed distribution and
 abundance across a landscape. Sheet 2 (Seedling) - community matrix of
 seedlings: This table displays the number of seedlings of various species
 found in different plots (sampling locations). Sheet 3 (Adult) - community
 matrix of adults: This new matrix is a community matrix of adults, showing
 counts of adult individuals of various plant species across the same or
 similar plots (r4, r6, r7, ..., r30). ## Code/software Excel, Google
 Sheets, LibreOffice Calc
DOI: 10.5061/dryad.v6wwpzh7k
title: Data from: Flood-driven turbidite deposition in a highstand-detached submarine canyon

description: Turbidites on active margins represent key archives of great earthquakes,
 yet turbidity currents triggered by nonseismic events complicate
 paleoearthquake records and influence geochemical budgets. Sediment cores
 collected from Astoria Canyon address whether ocean-process-triggered
 turbidity currents are preserved in “highstand-inactive” canyon
 stratigraphy. Detailed analysis of a turbidite-bearing core indicates
 fluvial origin on the basis of sedimentology, geochronology, and organic
 matter composition. Turbidites are 15 cm thick, graded, and laminated.
 Turbidite 210Pb activity is low, and depositional ages align with major
 Columbia River floods. Turbidite organic matter is terrestrial and modern
 (-26‰ δ13Corg, 18 C:N, ~6 mg lignin per 100 mg OC). These deposits provide
 the first direct evidence of turbidite deposition that post-dates the
 latest megathrust earthquake in northern Cascadia, with implications
 including that highstand stratigraphy preserves nonseismic events,
 turbidite composition reflects sediment source, and turbidite deposition
 represents a significant component of sediment and carbon accumulation.
description: # Dryad dataset Dataset DOI:
 [10.5061/dryad.v6wwpzh7k](10.5061/dryad.v6wwpzh7k) ### Files and variables
 #### File: supplement_OM.xlsx This file contains the data related to
 sediment geochemistry, radiometric dating, and organic matter composition
 for the linked publication. It is organized into three sheets:
 "AC212_210Pb" Contains **lead-210 radionuclide data** and
 sediment characteristics for core AC212, used to estimate sediment
 accumulation rates. "AC212_OM" Provides **organic matter and
 isotopic composition data** for samples from core AC212.
 "SURFACE_GRABS" Includes **surface sediment grab
 data** collected from multiple locations within and near Astoria Canyon,
 focusing on organic carbon and isotope characteristics. ##### Variables *
 `% TOC` percent total organic carbon * `210Pb_excess at collection,
 salt+mud correction (dpm/g)` excess lead-210 activity at the time of
 sediment collection * `Auth` author of dataset * `C:N (atomic)` atomic
 ratio of carbon to nitrogen * `Density_bulk_dry (g/cm3)` dry bulk density
 * `Depth` (m) water depth * `Depth_midpt (cm)` depth down-core  *
 `Environment` type of environment the sample was collected from *
 `Error_MudSaltCorr (Xdir_error)` analytical uncertainty associated with
 210pb activity * `Interval_Thickness (cm)` core sample interval thickness
 * `LIG (mg/100 mg)` lignin overall concentration * `Lat` (decimal degrees)
 latitude * `Lon` (decimal degrees) longitude * `SampleIdentifier` sample
 ID * `Va/Vh` (ratio) acid-aldehyde ratio for vanillin *
 `c/v`(ratio) cinnamyl to vanillyl ratio * `dtype` data type *
 `s/v`(ratio) syringyl to vannilyl ratio * `source` data source * `δ13C (vs
 VPDB, ‰)` delta 13 C isotope measurement relative to VPDB international
 standard
DOI: 10.5061/dryad.jh9w0vtp7
title: Data from: Male-like plumage in an urban nesting Veraguan mango: evidence of a female-limited polymorphism?

description: A first instance of parental care by a male-plumaged hummingbird from a
 sexually dimorphic species contributes important natural history
 understanding and helps illuminate the possibility of interesting
 female-limited polymorphisms across hummingbird species. Using photos and
 2.5 min of video taken at close proximity, we documented a Veraguan mango
 (Anthracothorax veraguensis) with male plumage both incubating eggs and
 later feeding nestlings in the town of Palmar Norte in southern Costa
 Rica. Based on plumage characteristics and range, we rule out the similar
 green-breasted mango (A. prevostii) that occurs in close geographic
 proximity. On-ground exploration and Google Earth imagery revealed the
 landscape surrounding the nest as a heterogeneous mix of urban,
 residential, and agricultural land. Given our assumptions about the bird’s
 sex and age, we speculated on potential mechanisms for male-like plumage
 in adult female Veraguan mango (and related species in the Anthracothorax
 genus), including age-related plumage ontogeny and the interaction of
 social and ecological selection pressures. Our observation contributes
 valuable information to the natural history of the Veraguan mango and
 opens the possibility of a female-limited polymorphism in the species.
description: ## Male-like plumage in an urban nesting Veraguan mango: evidence of a
 female-limited polymorphism? Dataset DOI:
 [10.5061/dryad.jh9w0vtp7](10.5061/dryad.jh9w0vtp7) ## Description of the
 data and file structure With video, we documented a putative female
 Veraguan mango (*Anthracothorax veraguensis*) with male-like plumage
 providing parental care, including incubating eggs and feeding two
 juvenile birds, in a conspicuously placed nest in southern Costa Rica. The
 video has no dialogue. ### Files and variables #### File: DSCN8818.MP4
 **Description:** With video, we documented a putative female Veraguan
 mango (*Anthracothorax veraguensis*) with male-like plumage providing
 parental care, including incubating eggs and feeding two juvenile birds,
 in a conspicuously placed nest in a small town in the Puntarenas province
 of Costa Rica (8° 57' 55.8"N, 83° 27' 42.5"W; 32 MSL).
 We observed, photographed, and recorded videos of a putative female
 Veraguan mango with male plumage incubating eggs and feeding nestlings in
 February 2025. Our first observation on Feb 5, 2025 at 4:56 PM included 45
 min of viewing the unattended nest with binoculars and a Nikon COOLPIX
 P950 camera from 10 m away and 5 min of viewing the adult mango perched on
 the rim of the nest and incubating the eggs (Fig. 1B-C). We did not see
 the adult tending to the nest structure or adding more materials. We
 returned to view the nest on Feb 13, 2025 at 1:26 PM. We observed the nest
 from 10 m away using binoculars and a Nikon COOLPIX P950 camera. ## Access
 information Other publicly accessible locations of the data: * None Data
 was derived from the following sources: * None
DOI: 10.5061/dryad.zkh1893nm
title: Whole genome sequence of <em>Paramecium</em> endosymbiont, <em>Chlorella</em> sp. strain NIG-J1

description: Chlorella is a unicellular green alga and some species (strain) of
 Chlorella are known as endosymbiont of protists and animals. We performed
 whole genome sequencing of Chlorella strain isolated from Paramecium
 bursaria for comparative transcriptome analyses. Long-read sequencing data
 generated with PacBio Sequel II was assembled using canu and
 error-corrected using Pilon. The assembled contigs were used for gene
 prediction using BEAKER2. The data files included here are the BRAKER2
 output: the nucleotide sequence of the gene (Chlorella_sp_NIG-J1.cds), the
 amino acid sequence (Chlorella_sp_NIG-J1.pep), and the annotation file
 (Chlorella_sp_NIG-J1.gff3).
description: # Whole genome sequence of *Paramecium* endosymbiont, *Chlorella* sp.
 strain NIG-J1 Dataset DOI: [10.5061/dryad.zkh1893nm]
 ([https://doi.org/10.5061/dryad.zkh1893nm](https://doi.org/10.5061/dryad.zkh1893nm)) ## Description of the data and file structure Chlorella_sp_NIG-J1.zip contains the following files. Genome data and PacBio raw reads of *Chlorella* sp. strain NIG-J1 were deposited to DDBJ (BioProject: PRJDB19703, Biosample: SAMD00855393, sequence read archive: DRR626671). ## File contents Chlorella_sp_NIG-J1.pep: Protein sequences predicted from genome sequences using the BRAKER2 pipeline. Chlorella_sp_NIG-J1.gff3: General feature format information of the assembled genome sequences. This file is a standardized format for describing genomic features, which have 9 columns; column 1: Genome contig ID, column 2: Software name that generated the feature, column 3: The type of the feature, column 4: Genomic start of the feature, column 5: Genomic end of the feature, column 6: Score, column 7: The strand of the feature, column 8: Phase, column 9: Gene ID. The number (ex. g1.t1) following "ID=" corresponds to the gene ID following "ChlorellaJ1_" (ex. ChlorellaJ1_g1.t1) in Chlorella_sp_NIG-J1.cds and Chlorella_sp_NIG-J1.pep. Chlorella_sp_NIG-J1.cds: Coding DNA sequences predicted from genome sequences using BRAKER2 pipeline.
DOI: 10.15468/dl.h7f2zv
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triplophysa rosa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004391-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.5hqbzkhhp
title: Plastic film residue concentrations in Chinese croplands

description: Agricultural plastic mulch films are a major source of plastic pollution
 of croplands. In China, which uses about 68% of the plastic mulch film
 produced globally (ca. 1.4 million tonnes y-1), soils have been heavily
 contaminated with mulch fragments. Here, we collected a national dataset
 of macroplastic residues (&gt; 5 mm) in soil, including 3145 sampling
 sites, and provincial plastic film usage from 1992 to 2019 in China, and
 we established a linear model between the residue amount and historical
 cumulative usage within each province. We quantified the amount of plastic
 mulch residues in Chinese croplands on a national scale during the past 30
 years and predicted plastic pollution until 2050. Our results reveal the
 total national amount of plastic mulch residue in 2020 to be 2.07 million
 tonnes with a 95% CI of [1.67, 2.58]. This accumulated amount of plastic
 in Chinese soils roughly equals the annual amount of plastic films used
 globally (2.08 million tonnes in 2018), which is about 8% of the national
 historical used plastic mulch film (27.3 million tonnes) remains in soil
 as legacy plastic. Plastic concentrations in Chinese croplands range from
 7.7 kg ha-1 in Anhui to 399 kg ha-1 in Xinjiang, with an average value of
 119 kg ha-1 (equivalent to 0.03 g kg-1 soil). We predict that the total
 amount and average concentration of plastic residues in Chinese croplands
 will reach 6.24 million tonnes and 357 kg ha-1 (equivalent to 0.1 g kg-1
 soil) in 2050 under current plastic usage. There is an urgent need for
 regulatory actions to control plastic pollution in Chinese agriculture.
description: # Plastic film residue concentrations in Chinese croplands Dataset DOI:
 [10.5061/dryad.5hqbzkhhp](10.5061/dryad.5hqbzkhhp) ## Description of the
 data and file structure This dataset includes 3,145 records of residual
 plastic mulch film concentrations (kg/ha) for 32 provincial-level
 administrative regions in China, excluding Hong Kong, Macau, Taiwan, and
 Tibet. ### Files and variables #### File: Data\_S2.zip
 **Description:** The dataset includes the residual concentration of
 plastic film, sampling coordinates, sampling year, and data source. In the
 Excel, the first column represents the ID number, the second column
 indicates the province name, the third column shows the longitude of the
 sampling site, the fourth column shows the latitude of the sampling site,
 the fifth column indicates the concentration of residual plastic film
 (kg/ha), the sixth column shows the Sampling Year, and the seventh column
 indicates the data source. In this dataset, the concentration of some
 plastic mulch residues is marked in red text as "The providers do not
 agree to release" because the providers of this part of the data do
 not agree to make it public. If you need it, you can apply to us for
 access. We will decide whether to share this part of the data after the
 discussion. ## Access information Data was derived from the sources listed
 in the second sheet of the Excel file.
DOI: 10.15468/dl.m4apgc
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gaetanus kruppii",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 135 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004392-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.qv9s4mwsb
title: Historical and projected impact of global climate change on the extrinsic incubation of <em>Dirofilaria immitis</em>

description: Canine heartworm disease is caused by a mosquito-transmitted filarial
 nematode, Dirofilaria immitis, and the observed heterogenous global
 distribution of D. immitis cannot be fully explained by the distribution
 of its vectors. Transmission of D. immitis requires maturation of larvae
 within the mosquito, requiring a sustained ambient temperature above 14°C.
 This dataset contains RStudio scripts used to take global temperature data
 and classify areas as having hyperendemic potential for D.
 immitis transmission. We used past weather records to
 investigate the effect of climate change on global D. immitis
 transmissibility since 1980 and investigated three different carbon
 emissions scenarios to assess the future impact of projected climate
 changes in the years 2040, 2070, and 2100.
description: # Historical and projected impact of global climate change on the
 extrinsic incubation of *Dirofilaria immitis* Dataset DOI:
 [10.5061/dryad.qv9s4mwsb](10.5061/dryad.qv9s4mwsb) ## Description of the
 data and file structure Data files generated from global mapping of canine
 heartworm's extrinsic incubation period (EIP). Each summary map is a
 global raster, with cells representing the count of days supporting
 extrinsic incubation, and therefore not experiencing temperature-limited
 transmissibility (TLT). ### Files and variables #### File: Analysis.R
 **Description:** RStudio script for analysis #### File: Mapping.R
 **Description:** RStudio script for mapping #### File: Projections.R
 **Description:** RStudio script for mapping of projected weather data ####
 File: Visualisation.R **Description:** RStudio script for visualisation
 #### File: summarymaps.zip **Description:** zip file of annual count of
 days each raster cell supported transmission (past years). #### File:
 ssp_summarymaps.zip **Description:** zip file of annual count of days each
 raster cell supported transmission (future years). #### File:
 1980-2024_days_changed_summary.csv **Description:** .csv file used in
 script. Percentage coverage of land area and human in each TLT change
 category. #### File: global_climate_proportions.csv **Description:** .csv
 file used in script. Percentage coverage of land area and human for each
 year in each TLT zone (past years) #### File:
 global_climate_proportions_inclssp.csv **Description:** .csv file used in
 script. Percentage coverage of land area and human for each year in each
 TLT zone (future years) ## Code/software R and RStudio Version 4.4.1
 Packages are listed in the R files Please run in the following order:
 Mapping.R -&gt; Projections.R -&gt; Analysis.R -&gt; Visualisation.R ##
 Access information Data was derived from the following sources: *
 [https://psl.noaa.gov/](https://psl.noaa.gov/) *
 [https://doi.org/10.7927/H4F47M65](https://doi.org/10.7927/H4F47M65)