cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27231825.v1
title: Supplementary Material for: Long-term Survival Outcomes in Locally Advanced Breast Cancer after Mastectomy with or without Breast Reconstruction

description: Introduction: There is ongoing debate about the safety of breast reconstruction for patients with locally advanced breast cancer (LABC) who have undergone total mastectomy (TM). More and more LABC patients are undergoing breast reconstruction after TM, but its long-term survival outcomes remain unclear. This study aims to compare the survival outcomes of LABC patients who underwent breast reconstruction after TM with those who did not, based on a large sample.
Methods: We collected data for all LABC patients who underwent TM with or without breast reconstruction in the Surveillance, Epidemiology, and End Results (SEER) database. We divided patients into two groups: TM group and total mastectomy with reconstruction (TM+R) group. The primary outcomes were overall survival (OS) and breast cancer-specific survival (BCSS). Propensity score matching (PSM) analysis was used to eliminate imbalances of baseline data between the in tow groups. Data were analyzed using chi-square tests, Kaplan-Meier methods, and univariate and multivariate cox regression analyses.
Result: We identified 39,112 eligible patients (33,169 patients received TM and 5,943 received TM+R), and 8,680 patients were matched after PSM (4,340 patients received TM and 4,340 received TM+R). Patients with middle age, white, married, lived in urban, IIB-IIIA stage, invasive ductal carcinoma (IDC), pathological grade II-III, hormone receptor positive, and undergone chemotherapy were more likely to receive breast reconstruction. After PSM, Kaplan-Meier survival analysis showed better OS and BCSS in the TM+R group versus the TM group (OS:P&lt;0.001; BCSS: P=0.008). Multivariate cox regression analysis showed that TM+R significantly improved OS and BCSS (OS: hazard ratio (HR) 0.73, 95% CI [0.68,0.79], P&lt;0.001; BCSS: 95% CI [0.79,0.94], P=0.001). Subgroup analysis showed that patients with old age, white, and hormone receptor positive had better OS and BCSS by TM+R compared to TM. 
Conclusions: Breast reconstruction after total mastectomy is associated with better OS and BCSS in patients with LABC.
DOI: 10.17632/w6j2r7zgw9
title: Data for: Insights into the geometry and faulting style of the causative faults of the M6.7 1805 and M6.7 1930 earthquakes in the Southern Apennines (Italy) from coseismic hydrological changes

description: Figure 1 and Figure 3 are the original .ai figures summarizing all the hydrological changes associated to the 1805 and 1930 earthquakes.
The two .kml datasets plot the distribution of the hydrological changes associated to the 1805 and 1930 earthquakes in Google Earth.
DOI: 10.6084/m9.figshare.16854544.v1
title: Supplementary Material for: Identification of Preoperative Risk Factors for Poor Survival in Patients with Resectable Pancreatic Cancer Treated with Upfront Surgery

description: <b><i>Introduction:</i></b> The aim of this study was to identify preoperative risk factors for poor survival in patients with resectable pancreatic ductal adenocarcinoma (PDAC) treated with upfront surgery. <b><i>Methods:</i></b> Medical records of 268 patients with resectable PDAC defined by resectability status who underwent upfront surgery were reviewed retrospectively. Multivariate analyses were performed to identify preoperative risk factors for recurrence-free survival (RFS) and overall survival (OS). Moreover, a binary logistic regression model was built to determine preoperative independent risk factors of 2- and 3-year recurrence and survival. <b><i>Results:</i></b> Multivariate analyses identified CA19-9 (≥100 U/mL, <i>p</i> &lt; 0.001) as an independent risk factor for poor RFS, and worse performance status (1 or 2, <i>p</i> = 0.03), platelet:lymphocyte ratio (&lt;150, <i>p</i> = 0.04), and preoperative CA19-9 (≥100 U/mL, <i>p</i> &lt; 0.001) as independent risk factors for poor OS. Moreover, preoperative CA19-9 (≥100 U/mL) was the only independent risk factor identified for 2- and 3-year recurrence and survival. <b><i>Discussion/Conclusion:</i></b> Preoperative CA19-9 (≥100 U/mL) was the most reliable preoperative predictive factor for poor survival in resectable PDAC treated with upfront surgery. These findings warrant further clinical trials investigating efficacy of neoadjuvant therapy targeting the subset of patients with resectable PDAC who have elevated preoperative CA19-9, namely, those with high risk of poor prognosis.
DOI: 10.6084/m9.figshare.19175870.v1
title: Base de datos.xlsx

description: Dataset from the study "Changing trends in ophthalmological emergencies during the COVID-19 pandemic"
DOI: 10.6084/m9.figshare.22736456.v1
title: Instruction document

description: Basic information of our dataset.
DOI: 10.23641/asha.27040873.v1
title: Floating ball voice therapy: Preliminary effects (Van Stan et al., 2024)

description: <b>Purpose: </b>Floating ball voice therapy (FBVT) is a voice-controlled virtual environment based on a common treatment component across multiple evidence-based therapies: improved vocal efficiency (target) via practicing voicing with modified resonance and airflow (ingredient). This study preliminarily tested FBVT’s effects on outcomes and the potential for its novel variability metrics to predict individual patient generalization.<b>Method: </b>Ten patients with nonphonotraumatic vocal hyperfunction (NPVH) practiced FBVT for 10 days. Outcomes were assessed by a vocal efficiency ratio, a validated NPVH index, the patient-reported Voice-Related Quality of Life (V-RQOL), and forced-choice auditory judgments of overall severity. Exploration in early practice (Day 1) was estimated by how the patient’s two-dimensional variability (mean airflow and intensity) related to error (difference between the patient-produced and normative vocal efficiency ratio). Generalization from the game to spontaneous speech was evaluated using the validated NPVH index.<b>Results:</b> Ten days of FBVT were associated with improved vocal efficiency (Cohen’s <i>d</i> = 1.3), NPVH index (<i>d</i> = −1.1), V-RQOL total score (<i>d</i> = 0.9), and overall severity (odds ratio = 2.5). Patients who generalized on Day 10 exhibited airflow/intensity exploration that was more aligned with the error gradient on Day 1 (<i>d</i> = 0.6–1.2).<b>Conclusions:</b> A relatively small dosage of FBVT (i.e., 10 practice sessions) was associated with multiple improved voice therapy outcomes. The FBVT variability metrics on Practice Day 1 demonstrated strong potential to predict which patients generalized to connected speech. Future work can more thoroughly evaluate effects on outcomes and characterizing the quality of vocal exploration with a larger patient population.<b>Supplemental Material S1. </b>Individual patient average values Error (pixels), T-Cost (pixels), N-Cost (pixels), and V-RQOL (arbitrary units) on days 1 and 10 of practice.<b>Supplemental Material S2. </b>Individual NPVH indices (logit) for patients during early practice trials, late practice trials, and spontaneous speech during day 1, before day 10 practice, and after day 10 practice.Van Stan, J. H., Hillman, R. E., Krusemark, C., Muise, J., Stadelman-Cohen, T., Mehta, D. D., & Sternad, D. (2024). Floating ball voice therapy: Preliminary effects on outcomes and predicting individual patient differences in generalization. <i>Journal of Speech, Language, and Hearing Research, 67</i>(10), 3521–3535. https://doi.org/10.1044/2024_JSLHR-23-00727<br>
DOI: 10.6084/m9.figshare.1209706.v4
title: .

description: .
DOI: 10.6084/m9.figshare.27265071.v1
title: Prediction of SSB/DSB/RBP using multi-class model

description: We tried SVM, MLP, KNN, LR and RF, respectively, as the classifier, and used the features extracted by ESM2, to classify SSBs, DSBs and RBPs at the same time. Files in the folders represent the corresponding well-trained models which can be used to predict SSBs/DSBs/RBPs.
DOI: 10.6084/m9.figshare.28621121.v1
title: Head on bites (Acanthurus chirurgus)

description: Head-on bites from Acanthurus chirurgus. ID= identification of the specific bite. landmark= name of the landmark. x_mm and y_mm = standardised landmarks for each timestep. Time= standardised timesteps.
DOI: 10.6084/m9.figshare.7531013.v1
title: antithetic-vae-datasets

description: https://github.com/mhw32/antithetic-vae-public
DOI: 10.6084/m9.figshare.3526187.v1
title: Appendix B. Bulk soil characteristics of the nonreplicated plots at the Turkey Hill Plantations, Tompkins County, New York, USA.

description: Bulk soil characteristics of the nonreplicated plots at the Turkey Hill Plantations, Tompkins County, New York, USA.
DOI: 10.6084/m9.figshare.12173328.v1
title: simulation accuracy and cost.xlsx

description: This data describes computational time and error of simulation in different models
DOI: 10.6084/m9.figshare.28810439.v1
title: Gehringer2025_Datasets

description: Field data from Lucy Gray and Globe Fan. Rotating drum morphometry data. Logarithmic and exponential model fitting parameters. OLS regression analysis. Student's t-test data analysis for the field and experimental slope comparisons.
DOI: 10.6084/m9.figshare.28016138.v1
title: <b>MCOA: A Comprehensive Multimodal Dataset for Advancing Deep Learning in Corneal Opacity Assessment</b>

description: The dataset includes 131 eyes from 116 patients with corneal opacity and 205 eyes from 158 patients with clear corneas, totaling 5,376 AS-OCT images and 336 corresponding anterior segment photographs. Each image was carefully annotated to include detailed corneal and corneal opacity information.
DOI: 10.6084/m9.figshare.28479035.v4
title: pre

description: <br>prediction
DOI: 10.6084/m9.figshare.28861616.v2
title: Quantitative Assessment of Gene Expression Changes for Vascular Junction Proteins in Cerebral Microvessels from Murine Brain Slices Cultured for 12- and 24-hours.

description: Quantitative assessment of gene expression changes for the gap junction molecule Connexin43 (Cx43/Gja1) and the endothelial cell tight junction molecule Claudin12 (Cldn12) in cerebral microvessels of murine brain slices cultures for 0 hours, 12 hours, or 24 hours in oxygenated artificial cerebral spinal fluid (aCSF).
DOI: 10.6084/m9.figshare.25997305.v1
title: Networks in Metabolic Syndrome and Cancer Using Clinical Metabolites (KoGES Korea Cohort)

description: Metabolic syndrome (MetS) is characterized by a cluster of comorbidities, including obesity, hyperglycemia, hypertension, elevated triglycerides, and low HDL cholesterol, increasing the risk of cardiovascular diseases and type 2 diabetes. Additionally, MetS significantly influences the development and prevalence of various cancers, the second leading cause of death globally. The Korean Genome and Epidemiology Study (KoGES) by the Korea Disease Control and Prevention Agency (KDCA) estimates cancer burden linked to modifiable risk factors like obesity and alcohol consumption, but these estimates are not comprehensive for MetS.Using a systems biology approach, this study created a dataset of 21 blood and urinary metabolites to evaluate MetS, tracking 211,575 individuals over ten years, with a final sample of 76,916 participants. The dataset, derived from KoGES, maps metabolite networks across various diseases, including diabetes mellitus, hypertension, hyperlipidemia, obesity, thyroid disorders, and ten types of cancer. This extensive data aims to build a large-scale network for assessing MetS and cancer patients globally, promoting advanced visualizations and further analyses.
DOI: 10.17632/67ndhcx83v
title: Introducing the Concept of Creative Ancestry as a Means of Increasing Perceived Fairness and Satisfaction in Online Collaboration: An Experimental Study

description: The data in the file 'SurveyOutputCSV.xlsx' are the results from the survey carried out for this research. We designed a laboratory experiment to test the impact of creative ancestry on collaboration quality as well as the explanatory research model, based on a specifically developed collaboration system. The collaborative system was developed on the Ethereum Blockchain network. The files 'Smart Contract 1.csv', 'Smart Contract 2.csv', and 'Smart Contract 3.csv' contain the transaction data for all contributions made to the smart contracts which participants of this research interacted with. Finally, 'technivation_analysis.R' contains our data analysis scripts.
DOI: 10.17632/fwf2gbvp2t
title: Risk assessment of severe adult tetanus using the NLR and AST level and construction of a nomogram prediction model

description: This excel presents basic data, clinical symptoms, laboratory results, treatment, and outcomes for all patients included in the study.
DOI: 10.6084/m9.figshare.4212987.v1
title: Supplementary Material for: Aging of Cloned Animals: A Mini-Review

description: The number of species for which somatic cell nuclear transfer (SCNT) protocols are established is still increasing. Due to the high number of cloned farm, companion, and sport animals, the topic of animal cloning never ceases to be of public interest. Numerous studies cover the health status of SCNT-derived animals, but very few cover the effects of SCNT on aging. However, only cloned animals that reach the full extent of the species-specific lifespan, doing so with only the normal age-related afflictions and diseases, would prove that SCNT can produce completely healthy offspring. Here, we review the available literature and own data to answer the question whether the aging process of cloned animals is qualitatively different from normal animals. We focus on 4 main factors that were proposed to influence aging in these animals: epigenetic (dys)regulation, accumulation of damaged macromolecules, shortened telomeres, and (nuclear donor-derived) age-related DNA damage. We find that at least some cloned animals can reach the species-specific maximum age with a performance that matches that of normal animals. However, for most species, only anecdotal evidence of cloned animals reaching high age is available. We therefore encourage reports on the aging of cloned animals to make further analysis on the performance of SCNT possible.
DOI: 10.6084/m9.figshare.7745366.v1
title: GCMS data: Ferrihydrite pyrolysed at 650oC with 5 wt% octadecenoic acid

description: GCMS data: Ferrihydrite pyrolysed at 650oC with 5 wt% octadecenoic acid
DOI: 10.6084/m9.figshare.1151577.v1
title: An #altmetrics14 Twitter Archive
DOI: 10.6084/m9.figshare.3115408.v1
title: The effect of noseband tightening on horses' behaviour, eye temperature and cardiac responses

description: The effect of noseband tightening on horses' behaviour, eye temperature and cardiac responses
DOI: 10.6084/m9.figshare.22347175.v1
title: Dominance of particulate organic carbon in top mineral soils in cold regions

description: Template_experimental contains the experimental warming and POC and MAOC data in cold vs other biomes

Template_observational contains the observational POC and MAOC data across cold regions
DOI: 10.6084/m9.figshare.26089288.v1
title: test contig-level genome for PollenSeq

description: This is a test contig-level genome for PollenSeq
DOI: 10.6084/m9.figshare.21590673.v1
title: Data & Code for: Adaptive phenotypic and genomic divergence in the common chaffinch <em>Fringilla coelebs</em> following niche expansion within a small oceanic island Published in Journal of Evolutionary Biology

description: The data includes separated by folder the datasets and scripts to perform different analysis, including: <br> 1.VCFs 2. Morphology 3. Colour 4. RDA 5. BayPass 6. TopGo <br> Each folder contains a README.txt that explains each file.
DOI: 10.6084/m9.figshare.24212415.v1
title: Data for "Controls and significance of priming effects in lake sediments" by Bartosiewicz et al.,

description: This dataset contains all the results used to generate figures and text for the Controls and significance of priming effects in lake sediments" by Bartosiewicz et al., (Global Change Biology)
DOI: 10.6084/m9.figshare.19248626.v2
title: Prince Edward Islands geospatial database

description: This database contains vector files, raster datasets, and maps of topographical and hydrological parameters of the sub-Antarctic Prince Edward Islands. Data production procedures are described in the associated paper (see references below) and the metadata are described in the "README" word document. The data is intended for scientific and/or educational use. Marion Island = "mi" and Prince Edward Island = "pe".<br>
DOI: 10.6084/m9.figshare.25780110.v2
title: Underlying Data - Table Tennis EN.xlsx

description: A study of 136 table tennis players at the Thailand Master Table Tennis Championships 2024 in Chiangmai found significant correlations between playing table tennis and improved quality of life in physical health, psychological health, social relationships, and environmental health. Playing table tennis at a tournament level can enhance the overall quality of life for seniors.
DOI: 10.6084/m9.figshare.7890155.v1
title: gVCF_NA18625

description: 1000 Genomes gVCF mapped to hs37d5 for NA18625. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.27897276.v1
title: ThunderSTORM_Results_XZ.csv

description: This data is a csv datatype file containing the ThunderSTORM[1] results file obtained from analyzing the SimualtedData_XZ.tiff file contained within this collection.The ThunderSTORM parameters were set to the default parameters, with changes only made to the pixel size, which was set to 1 to deal with the anisotropic pixel size, as well as the fitting method, which was set to Maximum Likelihood Estimation to maximize the accuracy.[1] Ovesný, M. et al. ThunderSTORM; a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging. BioInformatics, Applications Note, 30 (16), 2389-2390 (2014).Please see the following GitHub repository for software and documentation for the Multi-Orientation MAXWELL analysis method:https://github.com/SierraD/Multi-Orientation-Maxwell/
DOI: 10.6084/m9.figshare.5723170.v1
title: Fig. 2. Exo70F1 is the donor of the Exo70 integration in RGH2

description: Multiple sequence alignments and phylogenetic trees based on protein for all and Exo70F gene families. FASTA files for all proteins used are included, as well as a definition file for gene family annotation.<br>
DOI: 10.6084/m9.figshare.14430833.v3
title: Fig. 5f

description: MICAgen mice were treated sc with 100 µg MCA. Around 100 days later, mice bearing fibrosarcomas were randomized to five groups and treated once with vehicle or 0.5 or 2 mg/kg MICAB1 PDB2G-ADCs or IC-PDB2G or vehicle. Tumor volumes per mouse over time are shown (<i>n</i>=15 per group)
DOI: 10.6084/m9.figshare.25202063.v1
title: Evaluation of hepatic AMP-activated protein kinase (AMPK), mechanistic target of rapamycin kinase complex 1 (mTORC1) and autophagy-lysosomal pathway in cows with mild or moderate fatty liver

description: Under energy deficient conditions, AMPK suppresses mTORC1 resulting in TFEB nuclear translocation, which in turn upregulates the transcription of genes related to autophagy lysosomal pathway. Herein, we showed that activity of AMPK, TFEB transcriptional activity and autophagy-lysosomal function were enhanced, but the activity of mTORC1 was inhibited in the liver of dairy cows with mild fatty liver. Conversely, overactivation of mTORC1, suppressed AMPK signaling pathway and TFEB transcriptional activity as well as impaired autophagy-lysosomal function were observed in the liver of dairy cows with moderate fatty liver. These data suggest that the metabolic status may be differ in cows experiencing different degrees of fatty liver.
DOI: 10.6084/m9.figshare.28738364.v1
title: Unified Physics from Consciousness-Based Resonance

description: We present a theoretical framework unifying quantum mechanics, gravity, and consciousness through a mechanism we term consciousness-based resonance. In this model, consciousness is treated as a fundamental field that interacts with quantum systems, influencing wavefunction collapse via an entropy-based criterion. We formalize an observer-dependent collapse dynamics in which the act of observation drives the quantum state to "lock" into preferred resonant states distinguished by number-theoretic (prime) patterns. Using a modified Lindblad equation incorporating entropy gradients, we derive how consciousness modulates unitary evolution. We establish a connection between information processing and spacetime curvature, showing how gravitational parameters might emerge from informational measures. The mathematical consistency of the model is analyzed: we define the evolution equations, prove standard quantum statistics are recovered in appropriate limits, and ensure its internal logic. We then propose empirical tests, including interference experiments with human observers, prime-number-structured quantum resonators, and synchronized brain-quantum measurements. By drawing on established principles in physics and information theory, as well as recent findings on observer effects in quantum systems, we demonstrate that treating consciousness as an active participant in physical processes can lead to a self-consistent extension of physics with experimentally verifiable predictions.
DOI: 10.6084/m9.figshare.12547712.v2
title: Streamflows

description: Flow discharge data at the outlet of each creek was obtained from a distributed hydrological model, HEC-HMS version 4.2 (USACE, 2015). The model was configured for the entire Huasco River basin (7242 km2), upstream the Santa Juana irrigation reservoir, as part of a debris flow mitigation project for the Chilean Ministry of Public Works (DOH).<br>
DOI: 10.6084/m9.figshare.28410500.v2
title: Biological Sediment Cohesion diminishes net deposition of fine particles over bare bed and within model emergent canopies

description: Data for the paper of "Biological Sediment Cohesion diminishes net deposition of fine particles over bare bed and within model emergent canopies"