cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17371390
title: Brassinosteroid treatment reveals the importance of xyloglucan transglucosylase/hydrolase (XTH) genes in growth habit determination of twining common bean vines

description: Data sets for the manuscript "XTH Genes impact Growth Habit Determination of Twining Common Bean Vine Revealed by Brassinosteroid Treatment".

Note that there are three treatments: BL (brassinolide, a brassinosteroid), BZ (brassinazole, a brassinosteroid inhibitor), ET (mock treatment, ethanol only).

There are also two timepoints. Timpoint A = 3 days after treatment, Timepoint B = 18 days after treatment. (In the Internode 4 elongation dataset, timepoints are noted as 0 (before treatment), 1 (3 days after treatment, Timepoint A), 2 (18 days after treatment, Timepoint B).

"Pvul" is short for Phaseolus vulgaris, the latin binomial for the common bean used in this project.

 

Datasets relating to morphology and immunodetection of xyloglucan can be found in the following files:-Internode 4 elongation

-G-fiber length

-G-fiber thickness

-Xyloglucan (presence detected in the G-layer via LM15)

 

Dataset used for the XTH gene tree can be found in the following file:

-Pvul_XTH_nucelotide_alignment

 

Datasets relating to RNAsequencing results can be found in the following files:

-gene_counts

-metadata

Differential Gene Expression results:

-DEG_results_BL_vs_ET_TimepointA

 

-DEG_results_BL_vs_ET_TimepointB

 

-DEG_results_BZ_vs_ET_TimepointA

 

-DEG_results_BZ_vs_ET_TimepointB

 

DEG_results_BL_vs_BZ_TimepointA

 

DEG_results_BL_vs_BZ_TimepointB

 

(Annotated version of the DEG results are also available for download, but these are not used in the R code and are also presented in the Supporting Files of the article).

 

Phaseolus vulgaris v2.1 genome annotation file to recreate analyses in R can be downloaded from Phytozome. Or downloaded from here as Pvulgaris_annotation.xls.

genome.gft file can be found as genome.gft.gz.
DOI: 10.5281/zenodo.18005305
title: Brassinosteroid treatment reveals the importance of xyloglucan transglucosylase/hydrolase (XTH) genes in growth habit determination of twining common bean vines

description: Data sets for the manuscript "XTH Genes impact Growth Habit Determination of Twining Common Bean Vine Revealed by Brassinosteroid Treatment".

Note that there are three treatments: BL (brassinolide, a brassinosteroid), BZ (brassinazole, a brassinosteroid inhibitor), ET (mock treatment, ethanol only).

There are also two timepoints. Timpoint A = 3 days after treatment, Timepoint B = 18 days after treatment. (In the Internode 4 elongation dataset, timepoints are noted as 0 (before treatment), 1 (3 days after treatment, Timepoint A), 2 (18 days after treatment, Timepoint B).

"Pvul" is short for Phaseolus vulgaris, the latin binomial for the common bean used in this project.

 

Datasets relating to morphology and immunodetection of xyloglucan can be found in the following files:-Internode 4 elongation

-G-fiber length

-G-fiber thickness

-Xyloglucan (presence detected in the G-layer via LM15)

 

Dataset used for the XTH gene tree can be found in the following file:

-Pvul_XTH_nucelotide_alignment

 

Datasets relating to RNAsequencing results can be found in the following files:

-gene_counts

-metadata

Differential Gene Expression results:

-DEG_results_BL_vs_ET_TimepointA

 

-DEG_results_BL_vs_ET_TimepointB

 

-DEG_results_BZ_vs_ET_TimepointA

 

-DEG_results_BZ_vs_ET_TimepointB

 

DEG_results_BL_vs_BZ_TimepointA

 

DEG_results_BL_vs_BZ_TimepointB

 

(Annotated version of the DEG results are also available for download, but these are not used in the R code and are also presented in the Supporting Files of the article).

 

Phaseolus vulgaris v2.1 genome annotation file to recreate analyses in R can be downloaded from Phytozome. Or downloaded from here as Pvulgaris_annotation.xls.

genome.gft file can be found as genome.gft.gz.
DOI: 10.15468/dl.64d4kd
title: Occurrence Download

description: A dataset containing 3400942 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus"
 ]
}

 The dataset includes 3400942 records from 3933 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080263-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25662030
title: Supporting data and codes

description: This is the supporting data and codes for two independent papers titled "Analytically Articulating the Effect of Buffer Size for Urban Green Space Exposure Measures" and "Generalized Conceptualization of the Optimal Contextual Unit in Environmental Exposure and the Role of Machine Learning".<b>Data and codes availability statement</b>: The participants of this study did not give written consent for their data to be shared publicly. So, due to the sensitive nature of the research, original data from the survey cannot be shared publicly. Alternatively, we provided the mocked survey data outside our study area to illustrate the procedure that can reproduce our results. The employed remote sensing data are commercial data that cannot be shared publicly. We can only provide a smaller section of our green space inventory that can efficiently illustrate our methods. Any usage of our green space data other than validating our methods in this paper needs permission from both Planet Labs, Inc. and the authors.
DOI: 10.6084/m9.figshare.25662030.v1
title: Supporting data and codes

description: This is the supporting data and codes for two independent papers titled "Analytically Articulating the Effect of Buffer Size for Urban Green Space Exposure Measures" and "Generalized Conceptualization of the Optimal Contextual Unit in Environmental Exposure and the Role of Machine Learning".<b>Data and codes availability statement</b>: The participants of this study did not give written consent for their data to be shared publicly. So, due to the sensitive nature of the research, original data from the survey cannot be shared publicly. Alternatively, we provided the mocked survey data outside our study area to illustrate the procedure that can reproduce our results. The employed remote sensing data are commercial data that cannot be shared publicly. We can only provide a smaller section of our green space inventory that can efficiently illustrate our methods. Any usage of our green space data other than validating our methods in this paper needs permission from both Planet Labs, Inc. and the authors.
DOI: 10.6084/m9.figshare.31238065
title: original data

description: Exploring highly active and cost-efficient electrocatalysts with in-situ regeneration of coordination sites is crucial for the large-scale application of electro-assisted uranium extraction technology, which can effectively solve the problem of limited coordination sites for traditional catalysts. Herein, we tailor the charge distribution of La(CrFeCoNiCu)O<sub>3</sub> via high-entropy effect to induce in-situ surface hydroxylation, thereby enabling robust uranium recovery from fluoride-containing uranium wastewater. The as-prepared La(CrFeCoNiCu)O<sub>3</sub> exhibits exceptional uranium removal performance, achieving a 97.8% removal rate in fluoride-containing uranium wastewater and still maintaining over 91.3% efficiency with real uranium wastewater. Relying on in-situ ATR-SEIRAS and quasi-in-situ XPS, we confirm that Cu sites serve as hydroxylation active sites, enabling precise capture of fluoro-uranium complexes, followed by uranium mineralization via electron reduction-free radical reoxidation pathway. In addition, large-scale application verification of real nuclear wastewater is conducted on the self-designed flow electrolysis device, confirming its cost advantage.
DOI: 10.6084/m9.figshare.31238065.v2
title: original data

description: Exploring highly active and cost-efficient electrocatalysts with in-situ regeneration of coordination sites is crucial for the large-scale application of electro-assisted uranium extraction technology, which can effectively solve the problem of limited coordination sites for traditional catalysts. Herein, we tailor the charge distribution of La(CrFeCoNiCu)O<sub>3</sub> via high-entropy effect to induce in-situ surface hydroxylation, thereby enabling robust uranium recovery from fluoride-containing uranium wastewater. The as-prepared La(CrFeCoNiCu)O<sub>3</sub> exhibits exceptional uranium removal performance, achieving a 97.8% removal rate in fluoride-containing uranium wastewater and still maintaining over 91.3% efficiency with real uranium wastewater. Relying on in-situ ATR-SEIRAS and quasi-in-situ XPS, we confirm that Cu sites serve as hydroxylation active sites, enabling precise capture of fluoro-uranium complexes, followed by uranium mineralization via electron reduction-free radical reoxidation pathway. In addition, large-scale application verification of real nuclear wastewater is conducted on the self-designed flow electrolysis device, confirming its cost advantage.
DOI: 10.6084/m9.figshare.31238065.v1
title: original data

description: Exploring highly active and cost-efficient electrocatalysts with in-situ regeneration of coordination sites is crucial for the large-scale application of electro-assisted uranium extraction technology, which can effectively solve the problem of limited coordination sites for traditional catalysts. Herein, we tailor the charge distribution of La(CrFeCoNiCu)O<sub>3</sub> via high-entropy effect to induce in-situ surface hydroxylation, thereby enabling robust uranium recovery from fluoride-containing uranium wastewater. The as-prepared La(CrFeCoNiCu)O<sub>3</sub> exhibits exceptional uranium removal performance, achieving a 97.8% removal rate in fluoride-containing uranium wastewater and still maintaining over 91.3% efficiency with real uranium wastewater. Relying on in-situ ATR-SEIRAS and quasi-in-situ XPS, we confirm that Cu sites serve as hydroxylation active sites, enabling precise capture of fluoro-uranium complexes, followed by uranium mineralization via electron reduction-free radical reoxidation pathway. In addition, large-scale application verification of real nuclear wastewater is conducted on the self-designed flow electrolysis device, confirming its cost advantage.
DOI: 10.15468/dl.ecdmdz
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neomitranthes cordifolia",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 54 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009054-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7rv3c7
title: Occurrence Download

description: A dataset containing 101591 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bursera simaruba",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 101591 records from 375 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009021-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84482v
title: Occurrence Download

description: A dataset containing 16703 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Silene nutans)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 16703 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009055-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18446581
title: Raw_microbial_read_counts
DOI: 10.15468/dl.j29ryh
title: Occurrence Download

description: A dataset containing 2073 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pongo pygmaeus"
 ]
}

 The dataset includes 2073 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009056-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5z4vye
title: Occurrence Download

description: A dataset containing 326187 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bodianus, Bodianus perditio, Bodianus pulchellus, Bodianus, Bodianus rubrisos, Bodianus rufus, Bodianus speciosus, Bodianus tanyokidus, Boesemania microlepis, Bolbometopon muricatum, Boleophthalmus, Boleophthalmus boddarti, Boleophthalmus pectinirostris, Bolinichthys distofax, Bolinichthys indicus, Bolinichthys longipes, Bolinichthys nikolayi, Bolinichthys photothorax, Bolinichthys pyrsobolus, Bolinichthys supralateralis, Bollmannia boqueronensis, Bollmannia chlamydes, Bollmannia communis, Bollmannia eigenmannorum, Bollmannia macropoma, Bollmannia marginalis, Boops boops, Boraras, Boraras brigittae, Boraras maculatus, Boraras urophthalmoides, Boreogadus saida, Borostomias antarcticus, Borostomias elucens, Borostomias pacificus, Bostockia porosa, Bostrychus, Bostrychus sinensis, Bostrychus zonatus, Bothragonus occidentalis, Bothragonus swanii, Bothrocara hollandi, Bothrocara zestum, Bothrocarina microcephala, Bothrocarina nigrocaudata, Bothus lunatus, Bothus maculiferus, Bothus mancus, Bothus myriaster, Bothus ocellatus, Bothus pantherinus, Bothus podas, Bothus robinsi, Botia almorhae, Botia dario, Botia histrionica, Botia kubotai, Botia lohachata, Botia rostrata, Botia striata, Botia udomritthiruji, Boulengerella cuvieri, Boulengerella maculata, Boulengerochromis microlepis, Boulengeromyrus knoepffleri, Bovichtus argentinus, Bovichtus diacanthus, Bovichtus variegatus, Bovitrigla acanthomoplate, Brachaluteres jacksonianus, Brachaluteres ulvarum, Brachionichthys hirsutus, Brachirus annularis, Brachirus harmandi, Brachirus orientalis, Brachirus siamensis, Brachirus, Brachyalestes, Brachychalcinus orbicularis, Brachygalaxias bullocki, Brachygenys chrysargyreus, Brachygobius doriae, Brachygobius kabiliensis, Brachygobius nunus, Brachygobius xanthomelas, Brachyhypopomus, Brachyhypopomus beebei, Brachyhypopomus occidentalis, Brachyhypopomus pinnicaudatus, Brachyhypopomus, Brachyhypopomus verdii, Brachyistius frenatus, Brachymystax lenok, Brachymystax tsinlingensis, Brachymystax tumensis, Brachyopsis segaliensis)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 326187 records from 719 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008998-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzh2sr
title: Occurrence Download

description: A dataset containing 4591 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is WII Herbarium Dataset"
 ]
}

 The dataset includes 4591 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009057-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.astuh7
title: Occurrence Download

description: A dataset containing 1311 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Silene otites, Silene otites)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 1311 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009058-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.whb7xc
title: Occurrence Download

description: A dataset containing 1192899 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aeshna",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1192899 records from 2668 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008996-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ctc6m
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "GadmGid is IDN.32_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Coffea"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007935-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30479948
title: Olivine, olivine-hosted melt inclusion glass, and merrillite trace element data

description: Complete REE (and ITE) dataset for olivine, olivine-hosted melt inclusion glasses, and merrillite in a suite of depleted, intermediate, and enriched olivine-phyric shergottites. These include six depleted shergottites: Dar al Gani (DaG) 1037, Dhofar (Dho) 019, Northwest Africa (NWA) 2046, NWA 4925, Sayh al Uhaymir (SaU) 005, and Tissint; two intermediate shergottites: NWA 6234 and NWA 10170; and two enriched shergottites: Larkman Nunatak (LAR) 12011 and NWA 1068.
DOI: 10.6084/m9.figshare.30479948.v1
title: Olivine, olivine-hosted melt inclusion glass, and merrillite trace element data

description: Complete REE (and ITE) dataset for olivine, olivine-hosted melt inclusion glasses, and merrillite in a suite of depleted, intermediate, and enriched olivine-phyric shergottites. These include six depleted shergottites: Dar al Gani (DaG) 1037, Dhofar (Dho) 019, Northwest Africa (NWA) 2046, NWA 4925, Sayh al Uhaymir (SaU) 005, and Tissint; two intermediate shergottites: NWA 6234 and NWA 10170; and two enriched shergottites: Larkman Nunatak (LAR) 12011 and NWA 1068.
DOI: 10.25582/data.2024-04.3080977/2545600
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3080979/2545601
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3080980/2545602
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3080981/2545603
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3080982/2545604
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3080983/2545605
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3080984/2545606
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3080985/2545607
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3080986/2545608
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3080989/2545609
title: Data for EMSL Project 51287 from April 2024
DOI: 10.15468/dl.8fxg7e
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Encarsia smithi (Silvestri, 1926)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005558-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2024-04.3080991/2545610
title: Data for EMSL Project 51287 from April 2024
DOI: 10.15468/dl.4mgghy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Encarsia sankarani Hayat, 1989",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005559-250402121839773/datasets/export for details.
DOI: 10.25582/data.2024-04.3080992/2545611
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3080993/2545612
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3080994/2545613
title: Data for EMSL Project 51287 from April 2024
DOI: 10.15468/dl.93pjn3
title: Occurrence Download

description: A dataset containing 1891 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Siphonochilus aethiopicus (Schweinf.) B.L.Burtt",
 "Continent is Africa"
 ]
}

 The dataset includes 1891 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005560-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2024-04.3080996/2545614
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3080997/2545615
title: Data for EMSL Project 51287 from April 2024
DOI: 10.15468/dl.384vac
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alstroemeria hookeri Sweet"
 ]
}

 The dataset includes 145 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262054-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112036685
title: Cuneiform Tablet 1913.14.1685, Spurlock 1913.14.1685

description: [Text Description:] Administrative tablet ❧ [Text or Publication Number Note:] Spurlock 1913.14.1685; CDLI P421536 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/1.5) ❧ [Physical Object Note:] 3.2 x 2.2 x 1.6 cm (10 g)