cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/dkcakm
title: A case-driven multi-omics analysis for longitudinal ibrutinib response evaluation of patients with chronic lymphocytic leukemia

description: Patients with chronic lymphocytic leukemia (CLL) undergoing ibrutinib treatment often experience incomplete response, yet the molecular level underlying clonal inertia remains to be explored. We investigated the molecular and clinical dynamics of CLL during 16 months of ibrutinib monotherapy by analyzing blood samples from two patients who continued to harbor CLL cells in the peripheral blood during treatment. At diagnosis, the clonal burden within the B cell compartment was found to be 54.8% (pt 1) and 86.4% (pt 2) for the dominant clones. After 16 months, these clones still constituted 66.1% and 88.6%, respectively. Utilizing multi-omic methodologies at the DNA and RNA levels, including single-cell transcriptomics, we aimed to establish a comprehensive framework for multi-omics analysis for longitudinal ibrutinib response evaluation. The presented methodological approach revealed molecularly genetic and transcriptional stable disease during ibrutinib treatment, although with genes involved pathways related to apoptosis, cellular response to stress, and canonical NFKB signaling intensifying during treatment from diagnosis to 16 months of treatment.
DOI: 10.7910/dvn/4issuo
title: Massachusetts Archives Collection. v.180-Revolution Petitions, 1775-1776. SC1/series 45X, Petition of John Brown

description: &lt;p&gt;Petition subject: Military service &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:13909106"&gt;http://nrs.harvard.edu/urn-3:FHCL:13909106&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: 1775-12-05 &lt;/p&gt; &lt;p&gt;Petition location: Cambridge &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;John Brown&lt;/li&gt;&lt;li&gt;Thomas Nixon&lt;/li&gt;&lt;li&gt;William Prescott&lt;/li&gt;&lt;li&gt;Ephraim Corey&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Actions taken on dates: 1775-12-21 &lt;/p&gt; &lt;p&gt;Legislative action: Received in the Council on December 21, 1775 and read and sent and leave to withdraw &lt;/p&gt; &lt;p&gt;Total signatures: 14 &lt;/p&gt; &lt;p&gt;Legislative action summary: Received, read, sent, leave to withdraw &lt;/p&gt; &lt;p&gt;Legal voter signatures (males not identified as non-legal): 14 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Manuscript &lt;/p&gt; &lt;p&gt;Additional archivist notes: Salem Poor, Colonel Fryes' regiment, Captain Ames, Battle at Charlestown, [this is a recommendation, not a petition, but has previously been identified as a petition] &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: Massachusetts Archives volume 180, pages 241-241a &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/hmafsd
title: Pheidole

description: Partial list of Pheidole species for testing purposes.
DOI: 10.7910/dvn/hplsia
title: Mashhad Area

description: This is the shapefile of Mashhad area. It shows the urban area of the city of Mashhad.
DOI: 10.7910/dvn/7wixi7
title: Applying a Power Analysis to Everything We Do: A Qualitative Inquiry to Decolonize the Global Health and Development Project Cycle (R4S Project activity CC3)

description: This qualitative study was conducted with 20 key informants from 15 different organizations across the Global North (GN) and Global South (GS). Fifteen participants were from the GS, and 5 were from the GN. Key informant interviews (KIIs) were conducted from August 2021 to March 2022 via online platform or phone call. Participants in the KIIs were asked to share their experiences and perspectives related to the decolonization of the Global Health and Development (GHD) field. Prior to coding the data, an analytical framework was adopted to identify challenges and strategies related to colonial legacies and decolonization respectively. A codebook was developed and informed by the analytic framework, and included deductive codes for both challenges and strategies related to colonialism and decolonization throughout the GHD project life cycle. The life cycle phases used for analysis were conceptualization and contracting, program planning and implementation, and program evaluation and dissemination. This study was made possible by the American People through the U.S. Agency for International Development (USAID), provided to FHI 360 through Cooperative Agreement 7200AA19CA00041 to implement Research for Scalable Solutions. Partners on this work included Evidence for Sustainable Human Development Systems in Africa, Makerere University School of Public Health in Uganda, Population Services International, and Save the Children.
DOI: 10.7910/dvn/9gmwfe
title: Replication Data for: Political Orientation is Associated with Behavior in Public-Goods- and Trust-Games

description: To examine whether the political orientation is reflected in actual behavior, we applied classical paradigms of behavioral economics, namely the Public-Goods- (PGG) and the Trust-Game (TG), which constitute measures of cooperativeness, interpersonal trust, and reciprocity respectively in a large German sample of N=454. Participants intending to vote for right-of-center-parties showed significantly lower monetary transfers in both games than those planning to vote for left-of-center-parties. Accordingly, both scores were negatively associated with self-assessed conservatism and support for policies advocated by Germany’s right-of-center-parties, while showing positive correlations with the support of policies left-of-center-parties advocate. Interestingly, both measures also show distinct correlational patterns with Right-Wing-Authoritarianism and Social-Dominance-Orientation. None of these patterns applied to the Lottery-Game measuring unspecific risk-tolerance. We conclude by discussing potential psychological mechanisms mediating the relationships between ideology and actual social behavior as well as differences in experimental design to explain the deviant pattern of (null-) results in prior studies relating ideology to behavior in game-theoretic paradigms.
DOI: 10.7910/dvn/5spley
title: Replication Data for Norm Entrepreneurship in Foreign Policy: William Hague and the Prevention of Sexual Violence in Conflict

description: Theories of international norm diffusion rely on accounts of entrepreneurial action - almost exclusively identified as normative non-state actors who persuade powerful states to change their behaviour. We argue that powerful state agents can (also) be moral norm entrepreneurs and explicate the foreign policy acts that make them significant agents of international socialisation. Unlike non-state actors who set the agenda by advocating for new norms, foreign policy leaders leverage their identity and position to advance the recognition and diffusion of already established norms by reframing the moral prerogative of the ‘national interest’. The paper examines a prominent case, namely former British Foreign Secretary William Hague’s promotion, through the offices of the British Foreign Commonwealth, of the international norm prohibiting use of sexual violence in conflict. We ask why and how did the United Kingdom and William Hague devote the attention and resources of the foreign policy apparatus to further this norm established more than a decade earlier in the Rome Statute of the ICC and by gender justice advocates? Crucially, our findings highlight the role of foreign policy leadership in re-framing conflict-related sexual violence as a threat to national and international peace and security, the strategic use of the individual positioning of the foreign minister, the harnessing of the foreign policy machinery to mobilize commitments from other states through networked diplomacy, and seizing international political opportunities to promote the take-up of the norm.
DOI: 10.7910/dvn/ejtlah
title: ASCVD risk Deceased Donor Renal Transplant Graft Outcomes

description: Dataset created for a retrospective cohort study on the impact of atherosclerotic cardiovascular risk on graft failure of deceased donor renal transplant recipients
DOI: 10.7910/dvn/8s4m4l
title: Replication Data for an expermintal evaluation of "Conecta Ideas" in Chile

description: Replication Data for an expermintal evaluation of "Conecta Ideas" (an EduTech software) in Chile
DOI: 10.7910/dvn/joxxh0
title: Attention weight related project - Attention weight processing for "Automatic Compressive Sensing of Shack-Hartmann Sensors based on Vision Transformer"

description: The attention weight related project focuses on attention weight analysis, processing model-derived weights to explore statistical patterns in sub-aperture weight values and their relationship to signal-to-noise ratios (SNR). For detailed setup instructions and to understand file structure requirements including the creation of specific directories as needed for runtime, please refer to the README.md file included in the project repository.
DOI: 10.15468/dl.rphyav
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Pica pica (Linnaeus, 1758))",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015072-250525065834625/datasets/export for details.
DOI: 10.7910/dvn/4t7q6u
title: Replication Data for: The role of issue salience and competitive advantages in spatial models of political competition

description: The empirical evidence within the field of party competition suggests that the success of far right parties is tightly connected to issue salience of immigration policies. However, it is still unclear how other factors of the pattern of competition shape that relation. We contribute to this literature by taking a spatial viewpoint and analyzing the moderating role of the party configuration in a two-dimensional space. We focus on various characteristics of the party configuration that together describe a competitive advantage. We also extend the analysis to green parties. Based on simulations we hypothesize that far right and green parties benefit stronger from increasing issue salience if they take a moderate position on both their core issue and the economic dimension, and if the distance to the next competitor on their core issue is large. Empirical analyses of far right and green parties' success in Western European countries support our hypotheses.
DOI: 10.15468/dl.t37pz7
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Pica pica (Linnaeus, 1758))",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015074-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/plb1b4
title: Replication Data for: Motions to Instruct Conferees as a Majoritarian Tool in the U.S. House

description: These files replicate all descriptive and empirical results from the article.
DOI: 10.22002/zmpfj-rh857
title: P. gingivalis wild type

description: Type IX secretion system, t9ss
description: <strong>Tilt Series Date:</strong> 2020-10-16</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Species / Specimen:</strong> Porphyromonas gingivalis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -6.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Reynolds</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown anaerobically on a TSA+BHI plate at 37C for 3-4 days.</p>
<strong>Sample Preparation:</strong> Harvested directly from plates, resuspended in Tris buffer, fiducials added, then plunge-frozen.. Vitrobot (MK iv) settings: 100% humidity, 3ul sample, Blot force 3, blot time 3.5 sec. Wait time 0 . sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Acquired using the FISE . method.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-10-16-23/rawdata/</p>PginWT_8_010.mrc,  Tilt Series (Pixel Size 0.333 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-10-16-23/rawdata/PginWT_8_010.mrc"
        > <i class="download icon"></i> Download </a></p>

        PginWT_8_010_full.rec,  Reconstruction (Pixel Size 1.332 nm), 884.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-10-16-23/3dimage_114422/PginWT_8_010_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.268jga
title: Occurrence Download

description: A dataset containing 7680 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Chrysopsis mariana"
 ]
}

 The dataset includes 7680 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048559-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/m8q5g-6jj64
title: V. cholerae RT4236 (stationary)

description: Classical strain with ctxA deletion.Cell harbors pMT5 plasmid (inducible toxT).
description: <strong>Tilt Series Date:</strong> 2015-04-09</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O395-N1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Ronald K. Taylor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> ON cultures of Vibrio cholerae O395 NI pMT5 grown in LB pH 6.5, 1 mM IPTG and 100 ug/mL ampicilin</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 2.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-04-09-22/rawdata/</p>20150409_AK005_10022.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-04-09-22/rawdata/20150409_AK005_10022.mrc"
        > <i class="download icon"></i> Download </a></p>

        20150409_AK005_10022_part121_7.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.s2p5m2
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendrobium chrysotropis"
 ]
}

 The dataset includes 51 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048561-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/epvf6-f3k91
title: V. cholerae RT4236 (refreshed)

description: Grid box AK15.Classical strain with ctxA deletion.Cell harbors pMT5 plasmid (inducible toxT).
description: <strong>Tilt Series Date:</strong> 2015-07-13</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O395-N1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Ronald K. Taylor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Overnight cultures of Vibrio cholerae O395 N1 pMT5 grown in LB pH 6.5, 1 mM IPTG and 100 ug/mL ampicilin. Refreshed in fresh media right before freezing.</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 2.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: C-flat Cu 2/2.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-07-13-3/rawdata/</p>20150713_AK15_10003.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        20150713_AK15_10003_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/v0xrx-0pn25
title: Thermococcus koakarensis

description: Imaging Thermococcus koakarensis flagella
description: <strong>Tilt Series Date:</strong> 2016-09-19</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Thermococcus kodakarensis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Robert Gunsalus, UCLA. Data collected and processed by Kiwoo and Debnath Ghosal</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Standard Tk medium with starch and sulfur</p>
<strong>Sample Preparation:</strong> 8 grids were frozen for the this strain. Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3.5 sec. Wait time 8 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-09-19-8/rawdata/</p>atlas10009.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-09-19-8/rawdata/atlas10009.mrc"
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        atlas10009_full.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
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DOI: 10.22002/7rej7-wht90
title: lighlyfixed_wt_serumbottle

description: Raw data files of lighlyfixed_wt_serumbottle
description: <strong>Tilt Series Date:</strong> 2015-07-06</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Sahand and Moh USC</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown using serum bottle. This sample was lightly fixed with 2.5% glutaraldehyde, the very same sample that was sent for SEM. After mixing with glutaraldehyde in a tube, the sample was applied on grid and frozen.</p>
<strong>Sample Preparation:</strong> blotting conditions: 4 ul sample, blot force 6, blot time 3, drain time 1s</p>
  psa2015-07-06-5_slicer16555.jpg: nucleotide???
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-07-06-5/rawdata/</p>atlas1_fixedwt_serumbottle0005.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
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        atlas1_fixedwt_serumbottle0005_part121_6.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
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