cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5525/gla.researchdata.732
title: A comparison of deep learning and citizen science techniques for counting wildlife in aerial survey images

description: Files contain wildebeest counts for images taken during the 2015 wildebeest survey
- expert_counts: counting performed by DJLJ
- raw_zooniverse_counts: all counts from zooniverse volunteers (usernames redacted)
- yolo_counts: counting performed by deep learning object detection algorithm
DOI: 10.5281/zenodo.2549368
title: Supporting Jupyter Python notebook for "A new class of efficient randomized benchmarking protocols"

description: Python notebook containing the code used to generate the data for figure 2 in the appendix of "A new class of efficient randomized benchmarking protocols" (arXiv:1806.02048).
description: For questions and or comments please contact j.helsen@tudelft.nl
DOI: 10.5281/zenodo.2549367
title: Supporting Jupyter Python notebook for "A new class of efficient randomized benchmarking protocols"

description: Python notebook containing the code used to generate the data for figure 2 in the appendix of "A new class of efficient randomized benchmarking protocols" (arXiv:1806.02048).
description: For questions and or comments please contact j.helsen@tudelft.nl
DOI: 10.25919/5c4aee7a2f4fd
title: Parkes observations for project P971 semester 2018OCTS_17

description: We propose timing observations of the relativistic pulsar - white-dwarf binary PSR J1141-6545. This unique system offers access to a wide range of physics, from relativistic phenomena through pulsar emission cone studies, to the structure and distribution of interstellar plasma along our line-of-sight. The recently installed Parkes Ultra Wide Band Low Frequency (UWL) receiver has opened up the possibility of performing first-ever studies of its orbital dynamics at high temporal resolution and study of the effects of the intra-binary medium on the dispersion and polarisation of the pulse profile. Our analysis of data obtained to date suggests that the pulsar would precess away from our line-of-sight in the next 3-5 years. Hence, regular observations are crucial to maximizing its science outcome
DOI: 10.5281/zenodo.2548827
title: weDraw Movement Corpus

description: <strong>Summary</strong>

The weDraw Movement Corpus consists of three datasets: the weDraw-1 Movement Dataset (w1MD), the VI-weDraw Movement Dataset (VIwMD), and the weDraw-Games Movement Dataset (wGMD). The w1MD and VIwMD datasets were collected from children (with visual impairment, for the VIwMD dataset) based on game-like (i.e. fun) activities inspired by qualitative pedagogical studies. The wGMD dataset was based on weDraw serious games (Cartesian Garden, Angles Shapes and Fraction Musical Games) in both schools for children with visual impairment and mainstream schools.

The three datasets were built using video cameras, a Microsoft Kinect sensor, and the Notch wearable sensors. However, only the motion capture data from these sensors (and not raw videos) are open.

Please see the corpus README for more details.

 

<strong>How To Cite and Where to Get More Details</strong>


	Please cite the following papers in all publications that result from use of the <em>weDraw-1 Movement Dataset</em>:


<em>Olugbade, T. A., Newbold, J., Johnson, R., Volta, E., Alborno, P., Dillon, M., Volpe, G., Bianchi-Berthouze, N. Automatic Detection of Reflective Thinking in Mathematical Problem Solving based on Unconstrained Bodily Exploration, https://arxiv.org/abs/1812.07941</em>.

More details about the <em>weDraw-1 Movement Dataset</em> can also be found there.<br>
DOI: 10.5281/zenodo.2548828
title: weDraw Movement Corpus

description: <strong>Summary</strong>

The weDraw Movement Corpus consists of three datasets: the weDraw-1 Movement Dataset (w1MD), the VI-weDraw Movement Dataset (VIwMD), and the weDraw-Games Movement Dataset (wGMD). The w1MD and VIwMD datasets were collected from children (with visual impairment, for the VIwMD dataset) based on game-like (i.e. fun) activities inspired by qualitative pedagogical studies. The wGMD dataset was based on weDraw serious games (Cartesian Garden, Angles Shapes and Fraction Musical Games) in both schools for children with visual impairment and mainstream schools.

The three datasets were built using video cameras, a Microsoft Kinect sensor, and the Notch wearable sensors. However, only the motion capture data from these sensors (and not raw videos) are open.

Please see the corpus README for more details.

 

<strong>How To Cite and Where to Get More Details</strong>


	Please cite the following papers in all publications that result from use of the <em>weDraw-1 Movement Dataset</em>:


<em>Olugbade, T. A., Newbold, J., Johnson, R., Volta, E., Alborno, P., Dillon, M., Volpe, G., Bianchi-Berthouze, N. Automatic Detection of Reflective Thinking in Mathematical Problem Solving based on Unconstrained Bodily Exploration, https://arxiv.org/abs/1812.07941</em>.

More details about the <em>weDraw-1 Movement Dataset</em> can also be found there.<br>
DOI: 10.17632/6n2x9vv247.1
title: Data for: On the Cost-Effectiveness of National Economy-Wide Greenhouse Gas Emissions Abatement Measures
DOI: 10.17632/ksr4sd8467.1
title: Data for: Bénard-Marangoni Instability in Sessile Droplet Evaporating at Constant Contact Angle Mode on Heated Substrate

description: Movie of Figure 5, Movie of Figure 6, and Movie of Figure 7
DOI: 10.5281/zenodo.2549425
title: LoopDB - CDR-like loops from the PDB

description: A collection of loop like PDB structures that satisfy the CDR loop criteria. We use a set of programs to scan the Protein Databank for structures that contain loops that look like these seen in the CDR loops of antibodies.

This file is a python pickle file, designed to be used in the neural network found here: https://github.com/OniDaito/MRes

To generate this file yourself, you need to perform the following commands, assuming you have installed the required tools. These commands can be performed on Linux or MacOSX (Windows is not supported yet).<br>
 

<pre><code>./buildloopdb -m 5 -x 28 &lt;path to pdb mirror dir&gt; out.db

 for i in `ls &lt;PATH TO PDBS&gt;`; do ./scanloopdb out.db &lt;PATH TO PDBS&gt;/$i &gt;&gt; summary.txt; done

./extract.sh &lt;path to summary file&gt; &lt;path to PDB Mirror&gt; &lt;path to output files&gt;

 python pdb_to_postgres.py &lt;dbname&gt; &lt;path to pdbs&gt;

 python batcher.py --dbname loopdb --out test.pickle --max 28</code></pre>

For more details, please look at the Git repository README file you can find here: https://github.com/OniDaito/MRes/blob/master/data/README.markdown
DOI: 10.5281/zenodo.2549426
title: LoopDB - CDR-like loops from the PDB

description: A collection of loop like PDB structures that satisfy the CDR loop criteria. We use a set of programs to scan the Protein Databank for structures that contain loops that look like these seen in the CDR loops of antibodies.

This file is a python pickle file, designed to be used in the neural network found here: https://github.com/OniDaito/MRes

To generate this file yourself, you need to perform the following commands, assuming you have installed the required tools. These commands can be performed on Linux or MacOSX (Windows is not supported yet).<br>
 

<pre><code>./buildloopdb -m 5 -x 28 &lt;path to pdb mirror dir&gt; out.db

 for i in `ls &lt;PATH TO PDBS&gt;`; do ./scanloopdb out.db &lt;PATH TO PDBS&gt;/$i &gt;&gt; summary.txt; done

./extract.sh &lt;path to summary file&gt; &lt;path to PDB Mirror&gt; &lt;path to output files&gt;

 python pdb_to_postgres.py &lt;dbname&gt; &lt;path to pdbs&gt;

 python batcher.py --dbname loopdb --out test.pickle --max 28</code></pre>

For more details, please look at the Git repository README file you can find here: https://github.com/OniDaito/MRes/blob/master/data/README.markdown
DOI: 10.20348/storedb/1133/1199
title: German Thorotrast Study (rat data)
title: Thorotrast Studies Animals

description: There are data from four different animal studies with Thorotrast from the years 1975 - 1989 in rats.The study tracks key data, study design, number of animals, a list of responsible scientist and some references are already in the ERA database.Institution: Deutsches Krebsforschungszentrum, Heidelberg, Germany.Purpose: To determine the respective roles of the radioactive and chemical component in Thorotrast gel-induced tumours, alpha radioactivity in Thorotrast was enriched about 50 times by addition of Th-230.Thorotrast was the brand name of a stabilised colloidal solution of thorium dioxide which was used preferentially as an X-ray contrast medium for arteriography between 1930 and 1950. The administration of the medium led to lifelong chronic alpha-particle irradiation by thorium decay products, mainly in the organs of deposition. Several epidemiological follow-up studies were set up after recognition of these side-effects among which the German study was the largest. MS-Access Database as given from study PI Prof. v. Kaick, DKFZ Heidelberg 

FFPE Blocks are stored at HMGU.
description: There are data from four different animal studies with Thorotrast from the years 1975 - 1989 in rats.The study tracks key data, study design, number of animals, list of responsible scientist and some references are already in the ERA database.
Institution: Deutsches Krebsforschungszentrum, Heidelberg, Germany
Purpose: To determine the respective roles of the radioactive and chemical component in Thorotrast gel-induced tumours, alpha radioactivity in Thorotrast was enriched about 50 times by addition of Th-230.

04.01
Liver and Spleen Tumours in Rats After Injection of Th-230 Enriched Thorotrast
04.02
Lung Tumors in Rats After Injection of Normal and Th-228 Enriched Thorotrast and Inhalation of Quartz Dusts
04.03
Liver Tumors and Diseases in Rats After Fractionated Neutron Exposure or Injection of Nonradioactive Zirconotrast
04.04
Liver and Spleen Tumors in Rats After Injection of Zirconotrast to Which Different Amounts of Th-228/Th-230 Were Added
DOI: 10.5281/zenodo.2549444
title: Facility ownership and mortality among older adults residing in care homes

description: Dataset, STATA do-file, and R script to replicate the findings of the following article:

Damián J, Pastor-Barriuso R, García-López FJ, Ruigómez A, Martínez-Martín P, de Pedro-Cuesta J. Facility ownership and mortality among older adults residing in care homes. PLoS One 2019
DOI: 10.20348/storedb/1133/1200
title: German Thorotrast Study (rat data)
title: List of references

description: There are data from four different animal studies with Thorotrast from the years 1975 - 1989 in rats.The study tracks key data, study design, number of animals, a list of responsible scientist and some references are already in the ERA database.Institution: Deutsches Krebsforschungszentrum, Heidelberg, Germany.Purpose: To determine the respective roles of the radioactive and chemical component in Thorotrast gel-induced tumours, alpha radioactivity in Thorotrast was enriched about 50 times by addition of Th-230.Thorotrast was the brand name of a stabilised colloidal solution of thorium dioxide which was used preferentially as an X-ray contrast medium for arteriography between 1930 and 1950. The administration of the medium led to lifelong chronic alpha-particle irradiation by thorium decay products, mainly in the organs of deposition. Several epidemiological follow-up studies were set up after recognition of these side-effects among which the German study was the largest. MS-Access Database as given from study PI Prof. v. Kaick, DKFZ Heidelberg 

FFPE Blocks are stored at HMGU.
description: This list provides more than 200 references.References are available in electronic form (pdf).If you are interested, please send an e-mail to store[at]bfs.de and stating the file name. Example------You wish the PDF of the following reference------"van Kaick G, Dalheimer A, Hornik S, Kaul A, Liebermann D, Lührs H, Spiethoff A, Wegener K, Wesch H.__The German thorotrast study: recent results and assessment of risks.Radiat.Res. 152(6 Suppl):S64-S71; 1999"------ 1999_RadiatRes_V152_S64_vanKaick.pdf -- this is the file name
DOI: 10.5281/zenodo.2549455
title: DS_WD_Visuo-haptic perception of geometric angles across development_v1.0

description: Data set for study named - Visuo-haptic perception of geometric angles across development

This is the raw data in .csv, long form,  from children aged 6 -12 .
description: Dataset developed within the weDRAW project, funded by the European Union's Horizon 2020 Research and Innovation Programme under Grant Agreement No. 732391
DOI: 10.5281/zenodo.2549456
title: DS_WD_Visuo-haptic perception of geometric angles across development_v1.0

description: Data set for study named - Visuo-haptic perception of geometric angles across development

This is the raw data in .csv, long form,  from children aged 6 -12 .
description: Dataset developed within the weDRAW project, funded by the European Union's Horizon 2020 Research and Innovation Programme under Grant Agreement No. 732391
DOI: 10.5281/zenodo.2549466
title: DS_WD_Visuo-haptic perception of geometric angles across development_Adults_v1.0

description: Raw Adults data from Visuo-haptic perception of geometric angles across development IN .CSV long form.
description: Dataset developed within the weDRAW project, funded by the European Union's Horizon 2020 Research and Innovation Programme under Grant Agreement No. 732391
DOI: 10.5281/zenodo.2549467
title: DS_WD_Visuo-haptic perception of geometric angles across development_Adults_v1.0

description: Raw Adults data from Visuo-haptic perception of geometric angles across development IN .CSV long form.
description: Dataset developed within the weDRAW project, funded by the European Union's Horizon 2020 Research and Innovation Programme under Grant Agreement No. 732391
DOI: 10.15493/saeon.egagasini.10000022
title: The ASCA July 2018 (SEAmester III) Scientific Data System averaged data

description: The Agulhas System Climate Array (ACSA) is a mooring array and is designed to provide long-term observations of the Agulhas Current`s volume, heat and salt transport and its variability from mesoscale (eddies), through seasonal to interannual timescales. The ASCA shelf and tall moorings extend 200 km offshore along decending TOPEX/Jason satellite ground track # 96, through the core of the Agulhas Current, with CPIES measurements extending the array to 300 km offshore of Port Elizabeth. The data collected during this project have been obtained from various oceanographic instrumentation. This raw data was collected by the underway Scientific Data System (SDS), designed to collect, integrate, log and display various scientific, navigational and meterological sensors, instruments and systems on board the ship.
DOI: 10.5281/zenodo.2549478
title: DS_WD_Childrens Spatial Numeric Associations On Three Axes_v1.0

description: Raw data sets in long format .csv from experiments 1a and 1b Childrens Spatial numeric associations on three axes.
description: Dataset developed within the weDRAW project, funded by the European Union's Horizon 2020 Research and Innovation Programme under Grant Agreement No. 732391
DOI: 10.5281/zenodo.2549479
title: DS_WD_Childrens Spatial Numeric Associations On Three Axes_v1.0

description: Raw data sets in long format .csv from experiments 1a and 1b Childrens Spatial numeric associations on three axes.
description: Dataset developed within the weDRAW project, funded by the European Union's Horizon 2020 Research and Innovation Programme under Grant Agreement No. 732391
DOI: 10.5281/zenodo.2549512
title: Supplementary Material of SLR

description: This package is the supplementary material of our SLR protocol regarding software productivity measurement methods.
DOI: 10.5281/zenodo.2549513
title: Supplementary Material of SLR

description: This package is the supplementary material of our SLR protocol regarding software productivity measurement methods.
DOI: 10.7487/2019.25.1.1163
title: Sarah Faulkner

description: phyto occurring on 5% of samples in standard areas D8, D9, E8, E9 and F10. Raw data
DOI: 10.5281/zenodo.2548391
title: IMPULSE: Integrate Public Metadata Underneath professional Library SErvices

description: This repository contains the results of our experimental evaluation conducted with IMPULSE (https://github.com/t-blume/impulse). The datasets are subsets of the Billion Triple Challenge Dataset 2014 (http://km.aifb.kit.edu/projects/btc-2014/) containing only bibliographic metadata.
DOI: 10.5281/zenodo.2548392
title: IMPULSE: Integrate Public Metadata Underneath professional Library SErvices

description: The results from our experiments.
DOI: 10.5281/zenodo.2537815
title: Geographic variation of tree height of Pinus pinaster Aiton gathered from common gardens in Europe and North-Africa

description: This dataset collects individual georeferenced tree height data from <em>Pinus pinaster</em> Aiton planted in common gardens in France, Morocco and Spain, between years 1966 and 1992. The experimental design varies depending on the common garden, from a randomized complete to incomplete block design, RCB or RIB, respectively. The final dimension of the dataset is 123,801 individual tree height data measurements <em> </em>with 14 common gardens and 182 different genetic units. The data can be used to assess genetic variation and phenotypic plasticity with further applications in biogeography and forest management.
description: From the list of coauthors listed above, the following are responsible of the raw data: Ricardo ALIA, Hassan SBAY, Annie RAFFIN and Patrick PASTUSZKA.
description: {"references": ["Al\u00eda R, Gil L, Pardos JA (1995) Performance of 43 Pinus pinaster  Ait. provenances on 5 locations in Central Spain. Silvae Genet 44:75\u201381.", "Benito-Garz\u00f3n M, Al\u00eda R, Robson TM, Zavala MA (2011) Intra-specific variability and plasticity influence potential tree species distributions under climate change. Glob Ecol Biogeogr 20:766\u2013778. doi: 10.1111/j.1466-8238.2010.00646.x", "Harfouche A, Baradat P, Durel C, Pommery J (1995) Variabilit\u00e9 intrasp\u00e9cifique chez le pin maritime (Pinus pinaster Ait) dans le sud-est de la France. I. Variabilit\u00e9 des populations autochtones et des populations de l'ensemble de l'aire de l'esp\u00e8ce. Ann des Sci For 52:307\u2013328. doi: 10.1051/forest:19950402", "Vizca\u00edno-Palomar N, Ib\u00e1\u00f1ez I, Gonz\u00e1lez-Mart\u00ednez SC, et al (2016) Adaptation and plasticity in aboveground allometry variation of four pine species along environmental gradients. Ecol Evol 6:7561\u20137573. doi: 10.1002/ece3.2153"]}
DOI: 10.5281/zenodo.2549541
title: DS6.	UNDERSTANDING PEDAGOGICAL DESIGN REQUIREMENTS AND ITERATIVE EVALUATION (TEACHERS)

description: Data driven design framework, outlining key considerations for game design form a pedagogical perspective
DOI: 10.5281/zenodo.2549542
title: DS6.	UNDERSTANDING PEDAGOGICAL DESIGN REQUIREMENTS AND ITERATIVE EVALUATION (TEACHERS)

description: Data driven design framework, outlining key considerations for game design form a pedagogical perspective
DOI: 10.21227/6pfa-nc77
title: Classification of violin type using electroencephalography and machine learning to determine violin quality perception

description: Violin melody clips expressing happiness, sadness, threat, excitement, and neutrality. Both electric and acoustic violin.
DOI: 10.5281/zenodo.2549547
title: Regime Type and Quality of Government

description: Dataset with data used in the paper The Effect of Regime Type on Quality of Government
DOI: 10.5281/zenodo.2549548
title: Regime Type and Quality of Government

description: Dataset with data used in the paper The Effect of Regime Type on Quality of Government
DOI: 10.5281/zenodo.2537811
title: Geographic variation of tree height of Pinus pinea L. gathered from common gardens in Europe

description: This dataset collects individual georeferenced tree height data from <em>Pinus pinea </em>L. planted in common gardens in France and Spain, between years 1993 and 1997. The experimental design varies depending on the common garden, from a randomized complete to incomplete block design, RCB or RIB, respectively. The final dimensions of this database is 56,624 individual tree height measurements <em> </em>with 9 common gardens and 55 different provenances. The data can be used to assess genetic variation and phenotypic plasticity with further applications in biogeography and forest management.
description: From the list of coauthors listed above, the following are  responsible of the raw data:  Bruno  FADY and Sven MUTKE
description: {"references": ["Mutke S, Gordo J, Chambel MR, et al (2010) Phenotypic plasticity is stronger than adaptative differentiation among Mediterranean stone pine provenances. For Syst 19:354. doi: 10.5424/fs/2010193-9097", "Mutke S, Gordo IJ, Khouja ML, Fady B (2013) Low genetic and high environmental diversity at adaptive traits in Pinus pinea from provenance tests in France and Spain. Options M\u00e9diterran\u00e9ennes, A, no. 105, 73-80."]}
DOI: 10.5281/zenodo.2537760
title: Geographic variation of tree height of Pinus nigra Arn. gathered from common gardens in Europe

description: This dataset collects individual georeferenced tree height data from <em>Pinus nigra</em> Arn. planted in common gardens in France, Germany and Spain, between years 1968 and 2009. The experimental design varies depending on the common garden, from a randomized complete to incomplete block design, RCB or RIB, respectively. The final dimension of the dataset is 194,642 individual tree height data measurements <em> </em>with 15 common gardens and 78 different provenances. The data can be used to assess genetic variation and phenotypic plasticity with further applications in biogeography and forest management.
description: From the list of coauthors listed above, the following are  responsible of the raw data: Ricardo ALIA, Bruno  FADY and Muhidin ŠEHO
description: {"references": ["Huber, G., \u0160eho, M. (2016): Die Schwarzkiefer \u2013 eine Alternative f\u00fcr warm-trockene Regionen. LWF aktuell 110 (3/2016), 17 \u2013 20", "\u0160eho, M., Kohnle, U., Albrecht, A., Lenk, E. (2010): Wachstumsanalysen von vier Schwarzkiefer-Provenienzen auf trockenen Standorten in Baden-W\u00fcrttemberg. Allgemeine Forst- und Jagdzeitung 181, 104-116.", "Vizca\u00edno-Palomar N, Ib\u00e1\u00f1ez I, Gonz\u00e1lez-Mart\u00ednez SC, et al (2016) Adaptation and plasticity in aboveground allometry variation of four pine species along environmental gradients. Ecol Evol 6:7561\u20137573. doi: 10.1002/ece3.2153"]}
DOI: 10.5281/zenodo.2547670
title: S6 molecular dynamics simulation trajectories of tubulin in electric field: no field, 2e7 V/m, A1604

description: Molecular dynamics simulation trajectories of tubulin in electric field

traj_centered_no_field.xtc  no field

traj_centered_2_07.xtc  2e7 V/m
DOI: 10.5281/zenodo.2547671
title: S6 molecular dynamics simulation trajectories of tubulin in electric field: no field, 2e7 V/m, A1604

description: Molecular dynamics simulation trajectories of tubulin in electric field

traj_centered_no_field.xtc  no field

traj_centered_2_07.xtc  2e7 V/m
DOI: 10.5281/zenodo.2548246
title: S6 molecular dynamics simulation trajectories of tubulin in electric field: 1e7V/m, 5e7 V/m, A1604

description: Molecular dynamics simulation trajectories of tubulin in electric field

traj_centered_07.xtc  1e7 V/m

traj_centered_5_07.xtc  5e7 V/m

 

<br>
<br>
<br>
DOI: 10.5281/zenodo.2548247
title: S6 molecular dynamics simulation trajectories of tubulin in electric field: 1e7V/m, 5e7 V/m, A1604

description: Molecular dynamics simulation trajectories of tubulin in electric field

traj_centered_07.xtc  1e7 V/m

traj_centered_5_07.xtc  5e7 V/m

 

<br>
<br>
<br>
DOI: 10.5281/zenodo.2548485
title: S6 molecular dynamics simulation trajectories of tubulin in electric field: 1e8V/m, 2e8 V/m, 3e8 V/m, A1604

description: Molecular dynamics simulation trajectories of tubulin in electric field

traj_centered_08.xtc 1e8 V/m<br>
traj_centered_3_08.xtc  3e8 V/m<br>
traj_ricentrata_2_08.xtc  2e8 V/m