cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10282313.v1
title: Paleomagnetism of the Carboniferous Gresford Block, Tamworth Belt, southern New England Orogen: minor counter-clockwise rotation of a primary arc segment

description: Four oroclinal structures have been identified from structural, magnetic and gravity trends across a Carboniferous continental arc, forearc basin [Tamworth Belt (TB)] and conjugate accretionary complex in the southern New England Orogen (SNEO) of eastern Australia. None of the structures has yet been confirmed conclusively by paleomagnetism as oroclinal. Ignimbrites are common within the forearc basin and have been demonstrated to retain primary magnetisations despite prevalent overprinting. They are well exposed across six major tectono-stratigraphic blocks with partly interlinked stratigraphies, making the forearc basin highly prospective to oroclinal testing by comparing pole path segments for individual blocks across curved structures. Paleomagnetic studies have shown no noticeable rotation across the western/southwestern TB (Rocky Creek, Werrie and Rouchel blocks), but documented herein is a minor counter-clockwise rotation of the Gresford Block of the southern TB. This study details paleomagnetic, rock magnetic and magnetic fabric results for 87 sites (969 samples) across the southern Gresford Block. Predominantly thermal, also alternating field and liquid nitrogen, demagnetisations show a widely present low-temperature overprint, attributed to regional late Oligocene weathering, and high-temperature primary and overprint components residing in both mainly magnetite and mainly hematite carriers. Subtle, but systematic, directional differences between magnetite and hematite subcomponents show the latter as the better cleaned, better-defined, preferred results, detailing nine primary poles of middle and late Carboniferous ages and Permian and Permo-Triassic overprints as observed elsewhere in the western/southwestern TB. The primary poles update a poorly defined mid-Carboniferous section of the SNEO pole path and demonstrate counter-clockwise rotation, quantified at about 15° ± 13° from comparison of mid-Carboniferous Martins Creek Ignimbrite Member poles for the Rouchel and Gresford blocks, that may not necessarily have been completed prior to the Hunter–Bowen phase of the Gondwanide Orogeny. This minor counter-clockwise rotation of the Gresford Block accentuates a primary curvature of the southwestern/southern TB and heralds further, more complex, rotations of the Myall Block of the southeastern TB.
DOI: 10.6084/m9.figshare.10282295.v1
title: Small genomes in most mites (but not ticks)

description: Given their ecological and socioeconomic importance, it is not surprising that a number of mites (including ticks) have been the targets of recent genome sequencing projects. Less easily explained is why data on fundamental genetic parameters such as genome size (i.e. haploid DNA content) are greatly lacking for such a diverse and important group. Here, we compile the available genome size data for ticks and other mites, and add new estimates for another 20 species. We report a notable distinction in genome size between the comparatively larger genomes of ticks versus the (sometimes extremely) small genomes of non-tick mites. We also find a positive correlation between genome size and body size across mites, and explore some of the possible causes of the variability in genome size that exists among acarine species.
DOI: 10.6084/m9.figshare.10282244
title: MOESM4 of Impact of mouse contamination in genomic profiling of patient-derived models and best practice for robust analysis

description: Additional file 4. HAMA list. List of all HAMA found in this study.
DOI: 10.6084/m9.figshare.10282304.v2
title: Elated or sad mood induction affects the attention of patients with a bipolar disorder less than that of patients with a depressive disorder

description: <b>Introduction:</b> The role of acute mood states as mediating factors in cognitive impairment in patients with mania or depression is not sufficiently clear. Similarly, the extent to which cognitive impairment is trait or state-specific remains an open question. Therefore, the aim of this study was to investigate the effect of a mood-induction on attention in patients with an affective disorder. <b>Methods:</b> Twenty-two depressed bipolar patients, 10 manic bipolar patients, 17 with a depressive episode (MDE), and 24 healthy controls performed the Attention-Network-Test (ANT). In a within-participants design, elated and sad moods were induced by an autobiographic recall and measured on a self-report scale. Subsequently, participants performed the ANT again. <b>Results:</b> The modulating effect of the elated mood induction on attention was small. Only the MDE group displayed moderate improvements in selective attention and tonic alertness. Surprisingly, after the sad mood induction, patients with MDE improved moderately on phasic and tonic alertness. Phasic alertness was also enhanced in patients with mania. Finally, after the mood induction, patients with MDE showed the largest variability in attentional performance. <b>Conclusions:</b> Results showed only small effects of mood induction on attention. This supports the view that attention deficits reflect trait variables.
DOI: 10.6084/m9.figshare.10282238
title: MOESM2 of Impact of mouse contamination in genomic profiling of patient-derived models and best practice for robust analysis

description: Additional file 2. Read counts, RPKMs of mouse reads captured with SureSelectHumanAllExon V5.
DOI: 10.6084/m9.figshare.10282241
title: MOESM3 of Impact of mouse contamination in genomic profiling of patient-derived models and best practice for robust analysis

description: Additional file 3. GO annotation analysis. GO annotation analysis of mouse reads aligned on human genome reference.
DOI: 10.6084/m9.figshare.10282244.v1
title: MOESM4 of Impact of mouse contamination in genomic profiling of patient-derived models and best practice for robust analysis

description: Additional file 4. HAMA list. List of all HAMA found in this study.
DOI: 10.6084/m9.figshare.10282238.v1
title: MOESM2 of Impact of mouse contamination in genomic profiling of patient-derived models and best practice for robust analysis

description: Additional file 2. Read counts, RPKMs of mouse reads captured with SureSelectHumanAllExon V5.
DOI: 10.6084/m9.figshare.10282241.v1
title: MOESM3 of Impact of mouse contamination in genomic profiling of patient-derived models and best practice for robust analysis

description: Additional file 3. GO annotation analysis. GO annotation analysis of mouse reads aligned on human genome reference.
DOI: 10.6084/m9.figshare.10282220
title: MOESM3 of Do choosing wisely recommendations about low-value care target income-generating treatments provided by members? A content analysis of 1293 recommendations

description: Additional file 3. Coding of all recommendations.
DOI: 10.6084/m9.figshare.10282220.v1
title: MOESM3 of Do choosing wisely recommendations about low-value care target income-generating treatments provided by members? A content analysis of 1293 recommendations

description: Additional file 3. Coding of all recommendations.
DOI: 10.6084/m9.figshare.10282172
title: re_nstd_map.mat

description: re_nstd_map.mat is the standard deviation of the reconstructed normalized NO2 column using the best-fit multi-linear regression model.
DOI: 10.6084/m9.figshare.10282172.v1
title: re_nstd_map.mat

description: re_nstd_map.mat is the standard deviation of the reconstructed normalized NO2 column using the best-fit multi-linear regression model.
DOI: 10.6084/m9.figshare.10282115
title: City_Name

description: Shenzhen City
DOI: 10.6084/m9.figshare.10282109
title: MigrationYearly

description: Shenzhen City
DOI: 10.6084/m9.figshare.10282115.v1
title: City_Name

description: Shenzhen City
DOI: 10.6084/m9.figshare.10282085
title: Automatic extraction of road intersection points from USGS historical map series using deep convolutional neural networks

description: Tagged image tiles as well as the Faster-RCNN framework for automatic extraction of road intersection points from USGS historical maps of the United States of America. The data and code have been prepared for the paper entitled "Automatic extraction of road intersection points from USGS historical map series using deep convolutional neural networks" submitted to "International Journal of Geographic Information Science". The image tiles have been tagged manually. The Faster RCNN framework (see https://arxiv.org/abs/1611.10012) was captured from:https://github.com/tensorflow/models/blob/master/research/object_detection/g3doc/detection_model_zoo.md
DOI: 10.6084/m9.figshare.10282094
title: Proteome of dental pulp stem cells from human deciduous (SHED) and permanent teeth (DPSC) in ascorbic acid-induced osteoblast differentiation

description: The effect of ascorbic acid upon SHED and DPSC was tested for 7 and 21 days. Post ascorbic acid treatment, we compared the protein profile with positive control (combination of ascorbic acid and <i>B</i>-glycerophosphate) and negative control (untreated cells). We found that ascorbic acid-treated cells produced a highly similar protein profile with the positive control. Several proteins were suggested as candidate proteins that could be studied during ascorbic acid treatment.
DOI: 10.6084/m9.figshare.10282109.v1
title: MigrationYearly

description: Shenzhen City
DOI: 10.6084/m9.figshare.10282094.v1
title: Proteome of dental pulp stem cells from human deciduous (SHED) and permanent teeth (DPSC) in ascorbic acid-induced osteoblast differentiation

description: Kesan asid askorbik ke atas sel SHED dan DPSC selama 21 hari. Asid askorbik sahaja dapat menghasilkan profil protein yang sama dengan profil kawalan positif. Data dibandingkan antara rawatan asid askorbik dengan kawalan. Dua kawalan digunakan iaitu positif dan negatif. Hasilnya 7 protein telah disenarai pendek sebagai calon penanda biologi bagi pembezaan osteoblas.
DOI: 10.6084/m9.figshare.10282040
title: Bafq Leopard

description: This dataset belong to population study of leopards in central Iran
DOI: 10.6084/m9.figshare.10282040.v1
title: Bafq Leopard

description: This dataset belong to population study of leopards in central Iran
DOI: 10.17608/k6.auckland.10282019
title: COMBINE archive of DiFrancesco, Noble 1985

description: This is a COMBINE archive of the Cardiac Electrophysiology model of DiFrancesco, Noble 1985. This archive contains the SED-ML and CellML models associated with simulating Figure 6 and 7 of the original paper. <br><br>N.B in order to exactly recreate both figures, change the variable "y" to 10.2 in the SED-ML model.<br>
DOI: 10.17608/k6.auckland.10282019.v1
title: COMBINE archive of DiFrancesco, Noble 1985

description: This is a COMBINE archive of the Cardiac Electrophysiology model of DiFrancesco, Noble 1985. This archive contains the SED-ML and CellML models associated with simulating Figure 6 and 7 of the original paper. <br><br>N.B in order to exactly recreate both figures, change the variable "y" to 10.2 in the SED-ML model.<br>
DOI: 10.6084/m9.figshare.10281902
title: Data (Part 2) for 'Dynamic allometry in coastal overwash morphology'

description: These data for washover deposits in the Ria Formosa barrier system, in southern Portugal, accompany the article 'Dynamic allometry in coastal overwash morphology' (Lazarus et al., 2019). <b>Table 1</b> includes the barrier name, an indexing code (per barrier), image year, two washover feature IDs (for tracking individual features between images, washover area (m2), and washover length (m). (See Fig. 1 & 2 of the corresponding article.) <b>Table 2</b> includes the barrier name, an indexing code (per barrier), image year, two washover feature IDs (for tracking individual features between images, washover area (m2), and washover length (m) for a subset of individual deposits that appear in four images (1952, 1976, 1989, 2001). (See Fig. 5 of the corresponding article.) A full description of the physical setting for these deposits is available in: Matias, A., Ferreira, Ó., Vila-Concejo, A., Garcia, T., & Dias, J. A. (2008) Classification of washover dynamics in barrier islands. Geomorphology, 97(3-4), 655–674. See also doi:10.6084/m9.figshare.10259846 for further washover datasets.
DOI: 10.6084/m9.figshare.10281899
title: Thyroid DNA methylation 10 GTEx individuals

description: Thyroid DNA methylation 10 GTEx individuals
DOI: 10.6084/m9.figshare.10281902.v1
title: Data (Part 2) for 'Dynamic allometry in coastal overwash morphology'

description: These data for washover deposits in the Ria Formosa barrier system, in southern Portugal, accompany the article 'Dynamic allometry in coastal overwash morphology' (Lazarus et al., 2019). <b>Table 1</b> includes the barrier name, an indexing code (per barrier), image year, two washover feature IDs (for tracking individual features between images, washover area (m2), and washover length (m). (See Fig. 1 & 2 of the corresponding article.) <b>Table 2</b> includes the barrier name, an indexing code (per barrier), image year, two washover feature IDs (for tracking individual features between images, washover area (m2), and washover length (m) for a subset of individual deposits that appear in four images (1952, 1976, 1989, 2001). (See Fig. 5 of the corresponding article.) A full description of the physical setting for these deposits is available in: Matias, A., Ferreira, Ó., Vila-Concejo, A., Garcia, T., & Dias, J. A. (2008) Classification of washover dynamics in barrier islands. Geomorphology, 97(3-4), 655–674. See also doi:10.6084/m9.figshare.10259846 for further washover datasets.
DOI: 10.6084/m9.figshare.10281899.v1
title: Thyroid DNA methylation 10 GTEx individuals

description: Thyroid DNA methylation 10 GTEx individuals
DOI: 10.6084/m9.figshare.10281863
title: Thyroid DNA methylaiton 10 GTEx Individuals

description: Thyroid DNA methylaiton 10 GTEx Individuals
DOI: 10.6084/m9.figshare.10281839
title: Heart DNA methylation 10 GTEx individuals

description: Heart DNA methylation from 10 healthy individuals.
DOI: 10.6084/m9.figshare.10281857
title: Brain DNA methylation 10 GTEx Individuals

description: Brain DNA methylation 10 GTEx Individuals
DOI: 10.6084/m9.figshare.10281857.v1
title: Brain DNA methylation 10 GTEx Individuals

description: Brain DNA methylation 10 GTEx Individuals
DOI: 10.6084/m9.figshare.10281863.v1
title: Thyroid DNA methylaiton 10 GTEx Individuals

description: Thyroid DNA methylaiton 10 GTEx Individuals
DOI: 10.6084/m9.figshare.10280558
title: DATA -- collection of ReadMe files

description: zip file containing the collection of ReadMe files contained in the 50 projects listed. The correspondence is as follows:<br>android-gpuimage =&gt; 101.datansj_seg =&gt; 102.datarrow =&gt; 103.datatmosphere =&gt; 104.datautorest =&gt; 105.datblurkit-android =&gt; 106.datbytecode-viewer =&gt; 107.datcglib =&gt; 108.datdagger =&gt; 109.datExpectAnim =&gt; 110.datgraal =&gt; 111.datgraphql-java =&gt; 112.dathalo =&gt; 113.datHikariCP =&gt; 114.dathttp-request =&gt; 115.datinterviews =&gt; 116.datjava-learning =&gt; 117.datJava-WebSocket =&gt; 118.datjeecg-boot =&gt; 119.datjeesite =&gt; 120.datJFoenix =&gt; 121.datjna =&gt; 122.datjoda-time =&gt; 123.datjodd =&gt; 124.datJsonPath =&gt; 125.datjunit4 =&gt; 126.datlibrec =&gt; 127.datlight-task-scheduler =&gt; 128.datmal =&gt; 129.datmall =&gt; 130.datmosby =&gt; 131.datmybatis-plus =&gt; 132.datnanohttpd =&gt; 133.datNullAway =&gt; 134.datparceler =&gt; 135.datPermissionsDispatcher =&gt; 136.datPhoenix =&gt; 137.datquasar =&gt; 138.datrequery =&gt; 139.datretrofit =&gt; 140.datretrolambda =&gt; 141.datSentinel =&gt; 142.datsimplify =&gt; 143.datswagger-core =&gt; 144.dattcc-transaction =&gt; 145.datsymphony =&gt; 146.dattestcontainers-java =&gt; 147.datUltimateRecyclerView =&gt; 148.datweixin-java-tools =&gt; 149.datwire =&gt; 150.dat<br>
DOI: 10.6084/m9.figshare.10280573
title: Density-dependent mechanisms regulate spore formation in the diatom Chaetoceros socialis

description: Dataset used in the paper:"Density-dependent mechanisms regulate spore formation in the diatoms <i>Chaetoceros socialis</i>"<br><b></b><br>
DOI: 10.6084/m9.figshare.10280510
title: Gene database of Staphylococcus aureus NCTC 8325

description: <i>Staphylococcus aureus</i> is a round, Gram-positive bacterium that inhabits the skin and upper respiratory tract of human body. A commensal in most cases, but which can also become an opportunistic pathogen, <i>S. aureus</i> is an important clinical bacterium particularly in cases of strains resistant to methicillin (also known as methicillin resistant <i>Staphylococcus aureus</i>, MRSA). This work sought to provide a gene database of all genes in the sequenced genome of <i>S. aureus</i> NCTC 8325 (Genbank accession number: NCBI Reference Sequence: NC_007795.1). Using an in-house MATLAB algorithm, the Genbank genome file was parsed to reveal gene name, gene function and gene sequence of all genes in the genome of this Gram-positive bacterium. Information obtained should be useful for various microbiology and clinical research applications seeking, for example, to better understand the mechanisms underpinning the virulence of <i>S. aureus</i> under different clinical settings. <br><br>
DOI: 10.6084/m9.figshare.10280573.v2
title: Density-dependent mechanisms regulate spore formation in the diatom Chaetoceros socialis

description: Dataset used in the paper:"Density-dependent mechanisms regulate spore formation in the diatoms <i>Chaetoceros socialis</i>"<br><b></b><br>
DOI: 10.6084/m9.figshare.10280558.v1
title: collection of ReadMe files

description: zip file containing the collection of ReadMe files contained in the 50 projects listed
DOI: 10.6084/m9.figshare.10280255
title: MOESM5 of Screening for mouse genes lost in mammals with long lifespans

description: Additional file 5: Table S2. Data table of genomes in Ensembl v95. Columns: A, scientific name; B, common name; C, assembly name; D, accession and version; E, genome total length; F, total length of the assembly gaps; G, gaps percentage; H, total number of scaffolds; I, scaffold N50; J, total number of protein-coding genes in the Ensembl database; K, number of genes that have at least two neighboring genes; L, percentage of protein-coding genes having two or more neighbors.
DOI: 10.6084/m9.figshare.10280288
title: Metrics of Primary Neurospheres

description: <b>Contains the following underlying dataset:</b><br><b>1) All raw, uncrossed microscope images used to produce results.</b>Mouse 1=M1_Well_1, M1_Well_2, M1_Well_3<br>Mouse 2=M1_Well_1, M1_Well_2, M1_Well_3, M1_Well_4Mouse 3=M2_Well_1, M2_Well_2, M2_Well_3Mouse 4=M4_Well_1, M4_Well_2, M4_Well_3, M4_Well_4Mouse 5=M5_Well_1, M5_Well_2, M5_Well_3, M5_Well_4<br><b>2) Spreadsheet containing the numbers and sizes of neurospheres counted per field of view.</b><br><br>
DOI: 10.6084/m9.figshare.10280255.v1
title: MOESM5 of Screening for mouse genes lost in mammals with long lifespans

description: Additional file 5: Table S2. Data table of genomes in Ensembl v95. Columns: A, scientific name; B, common name; C, assembly name; D, accession and version; E, genome total length; F, total length of the assembly gaps; G, gaps percentage; H, total number of scaffolds; I, scaffold N50; J, total number of protein-coding genes in the Ensembl database; K, number of genes that have at least two neighboring genes; L, percentage of protein-coding genes having two or more neighbors.
DOI: 10.6084/m9.figshare.10280243
title: Additional file 4: of Quantitative lung morphology:Â semi-automated measurement of mean linear intercept

description: Macro which measures chords (This can measure horizontal or vertical chords). (TXT 413 bytes)
DOI: 10.6084/m9.figshare.10280246
title: MOESM2 of Screening for mouse genes lost in mammals with long lifespans

description: Additional file 2: Table S1. Table of identified mouse genes lost in mammals with a long lifespan. Columns: A, Ensembl gene ID; B, postprocessing result, where 0 means that an upper species has indications of gene preservation; C–F, maximum values of m, n, p, q thresholds, respectively, for the mouse gene to be still identified; G–J, coordinates of the gene; K, L, the name and description of the gene; M–AV, orthologous genes in other species specified in the head row.
DOI: 10.6084/m9.figshare.10280243.v1
title: Additional file 4: of Quantitative lung morphology:Â semi-automated measurement of mean linear intercept

description: Macro which measures chords (This can measure horizontal or vertical chords). (TXT 413 bytes)
DOI: 10.6084/m9.figshare.10280246.v1
title: MOESM2 of Screening for mouse genes lost in mammals with long lifespans

description: Additional file 2: Table S1. Table of identified mouse genes lost in mammals with a long lifespan. Columns: A, Ensembl gene ID; B, postprocessing result, where 0 means that an upper species has indications of gene preservation; C–F, maximum values of m, n, p, q thresholds, respectively, for the mouse gene to be still identified; G–J, coordinates of the gene; K, L, the name and description of the gene; M–AV, orthologous genes in other species specified in the head row.
DOI: 10.6084/m9.figshare.10280231
title: Additional file 2: of Quantitative lung morphology:Â semi-automated measurement of mean linear intercept

description: Macro which binarizes the images and isolates horizontal chords. (TXT 1 kb)
DOI: 10.6084/m9.figshare.10280234
title: Additional file 3: of Quantitative lung morphology:Â semi-automated measurement of mean linear intercept

description: Macro which binarizes the images and isolates vertical chords. (TXT 1 kb)
DOI: 10.6084/m9.figshare.10280234.v1
title: Additional file 3: of Quantitative lung morphology:Â semi-automated measurement of mean linear intercept

description: Macro which binarizes the images and isolates vertical chords. (TXT 1 kb)
DOI: 10.6084/m9.figshare.10280231.v1
title: Additional file 2: of Quantitative lung morphology:Â semi-automated measurement of mean linear intercept

description: Macro which binarizes the images and isolates horizontal chords. (TXT 1 kb)
DOI: 10.6084/m9.figshare.10280204
title: MOESM2 of The association between social capital and quality of life among a sample of Iranian pregnant women

description: Additional file 2. Raw dataset. The datasets used and analyzed during the current study is provided.
DOI: 10.6084/m9.figshare.10280204.v1
title: MOESM2 of The association between social capital and quality of life among a sample of Iranian pregnant women

description: Additional file 2. Raw dataset. The datasets used and analyzed during the current study is provided.
DOI: 10.6084/m9.figshare.10280144
title: MOESM2 of Hypo- or hyperactivity of zebrafish embryos provoked by neuroactive substances: a review on how experimental parameters impact the predictability of behavior changes

description: Additional file 2. Excel sheet 1—111 Literature search hits and the corresponding chemicals. Excel sheet 2—31 chemical hits after regrouping and elimination of chemicals with less than 3 entries. Excel sheet 3—Final 18 chemical hits and the experimental parameters analyzed in the main text of this study. Excel sheet 4—Summary of comparative analysis performed in this study as shown in Table 3 of the main text.
DOI: 10.6084/m9.figshare.10280144.v1
title: MOESM2 of Hypo- or hyperactivity of zebrafish embryos provoked by neuroactive substances: a review on how experimental parameters impact the predictability of behavior changes

description: Additional file 2. Excel sheet 1—111 Literature search hits and the corresponding chemicals. Excel sheet 2—31 chemical hits after regrouping and elimination of chemicals with less than 3 entries. Excel sheet 3—Final 18 chemical hits and the experimental parameters analyzed in the main text of this study. Excel sheet 4—Summary of comparative analysis performed in this study as shown in Table 3 of the main text.
DOI: 10.6084/m9.figshare.10280132
title: MOESM5 of Genome-wide prediction and prioritization of human aging genes by data fusion: a machine learning approach

description: Additional file 5: A list of all biological pathways of the candidate genes extracted by FUNRICH.