cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6732794
title: Using photodiodes and supervised Machine Learning for automatic classification of weld defects in laser welding of thin foils copper-to-steel battery tabs

description: In this folder, excel files are stored with the results of signal processing that supported findings in the following paper: "Using photodiodes and supervised Machine Learning for automatic classification of weld defects in laser welding of thin foils copper-to-steell battery tabs". Matlab scripts and orginal signals will be uploaded soon with more detailed description.
DOI: 10.5281/zenodo.6732793
title: Using photodiodes and supervised Machine Learning for automatic classification of weld defects in laser welding of thin foils copper-to-steel battery tabs

description: In this folder, excel files are stored with the results of signal processing that supported findings in the following paper: "Using photodiodes and supervised Machine Learning for automatic classification of weld defects in laser welding of thin foils copper-to-steell battery tabs". Matlab scripts and orginal signals will be uploaded soon with more detailed description.
DOI: 10.18430/m37uv5
title: X-ray diffraction data for the the crystal structure of Papain-Like Protease of SARS CoV-2, C111S/D286N mutant, in complex with a Lys48-linked di-ubiquitin (7UV5)
DOI: 10.18119/n9fc78
title: Bioregistry
DOI: 10.6084/m9.figshare.19093557
title: First fossil evidence of Indian tulip tree

description: <i>Thespesia populnea</i> (L) Sol. ex Corrêa (Malvaceae), known as the Indian tulip tree, is a well-known fast-growing, economically and ecologically important evergreen species in the tropical forests of India. However, no reliable fossil evidence of <i>Thespesia</i> has been reported from the Cenozoic sediments of India so far. Here, we document for the first time a well-preserved leaf impression similar to extant leaves of Indian tulip tree from the latest Neogene (Pliocene: Rajdanda Formation) sediments of Chotanagpur Plateau, eastern India. The leaf specimen has a broadly ovate mesophyllous blade, with a conspicuous acuminate apex (drip-tip), a cordate base, a stout petiole, actinodromous primary veins and brochiododromous secondary veins. We recognise the new fossil species <i>Thespesia neopopulnea</i> Hazra, Mahato and Khan sp. nov. The recovery of this species and other earlier-described evergreen taxa from the same formation, suggests the existence of tropical, warm and humid climatic conditions during the depositional period.
DOI: 10.6084/m9.figshare.19636469
title: Diversity and taxonomy of the fern genus <i>Vandenboschia</i> Copel. (Hymenophyllaceae, Polypodiidae) in the Afro-Malagasy region and description of a new species

description: <i>Vandenboschia radicans</i> (supposedly Neotropical and African), <i>V. speciosa</i> (supposedly European and Macaronesian) and <i>V. gigantea</i> (supposedly from western Indian Ocean) are morphologically close species and often confused in collections and in floras. Moreover, the status of African populations is still strongly debated. We undertook to combine morphological, morphometrics and molecular phylogenetic analyses, on these three species, by also including the Neotropical <i>V. collariata</i>, morphologically close to <i>V. radicans</i>, to try to discriminate putative geographical lineages and discuss their taxonomic status. Our results show that <i>V. collariata</i> is distinct from the other species, and that <i>V. radicans, V. speciosa, V. gigantea</i> and the African specimens remain morphologically and morphometrically indistinguishable. Nevertheless, the Neotropical specimens of <i>V. radicans, V. speciosa</i> and <i>V. gigantea</i> are each genetically strongly distinct and are thus clearly supported as distinct species. African specimens are all grouped into a distinct clade sister to <i>V. gigantea</i> and are distinguished by the presence of a well-developed wing on the stipe, lacking in <i>V. gigantea</i>. Taking into account this stipe feature as well as genetic differences, we describe here <i>Vandenboschia confusa</i> as a new species corresponding to the African populations. The origin of this species in the region is discussed, in addition to the complex taxonomy of European-Macaronesian <i>V. speciosa</i>.
DOI: 10.6084/m9.figshare.19636469.v1
title: Diversity and taxonomy of the fern genus <i>Vandenboschia</i> Copel. (Hymenophyllaceae, Polypodiidae) in the Afro-Malagasy region and description of a new species

description: <i>Vandenboschia radicans</i> (supposedly Neotropical and African), <i>V. speciosa</i> (supposedly European and Macaronesian) and <i>V. gigantea</i> (supposedly from western Indian Ocean) are morphologically close species and often confused in collections and in floras. Moreover, the status of African populations is still strongly debated. We undertook to combine morphological, morphometrics and molecular phylogenetic analyses, on these three species, by also including the Neotropical <i>V. collariata</i>, morphologically close to <i>V. radicans</i>, to try to discriminate putative geographical lineages and discuss their taxonomic status. Our results show that <i>V. collariata</i> is distinct from the other species, and that <i>V. radicans, V. speciosa, V. gigantea</i> and the African specimens remain morphologically and morphometrically indistinguishable. Nevertheless, the Neotropical specimens of <i>V. radicans, V. speciosa</i> and <i>V. gigantea</i> are each genetically strongly distinct and are thus clearly supported as distinct species. African specimens are all grouped into a distinct clade sister to <i>V. gigantea</i> and are distinguished by the presence of a well-developed wing on the stipe, lacking in <i>V. gigantea</i>. Taking into account this stipe feature as well as genetic differences, we describe here <i>Vandenboschia confusa</i> as a new species corresponding to the African populations. The origin of this species in the region is discussed, in addition to the complex taxonomy of European-Macaronesian <i>V. speciosa</i>.
DOI: 10.6084/m9.figshare.19093557.v1
title: First fossil evidence of Indian tulip tree

description: <i>Thespesia populnea</i> (L) Sol. ex Corrêa (Malvaceae), known as the Indian tulip tree, is a well-known fast-growing, economically and ecologically important evergreen species in the tropical forests of India. However, no reliable fossil evidence of <i>Thespesia</i> has been reported from the Cenozoic sediments of India so far. Here, we document for the first time a well-preserved leaf impression similar to extant leaves of Indian tulip tree from the latest Neogene (Pliocene: Rajdanda Formation) sediments of Chotanagpur Plateau, eastern India. The leaf specimen has a broadly ovate mesophyllous blade, with a conspicuous acuminate apex (drip-tip), a cordate base, a stout petiole, actinodromous primary veins and brochiododromous secondary veins. We recognise the new fossil species <i>Thespesia neopopulnea</i> Hazra, Mahato and Khan sp. nov. The recovery of this species and other earlier-described evergreen taxa from the same formation, suggests the existence of tropical, warm and humid climatic conditions during the depositional period.
DOI: 10.17632/v7ppb2xr99.2
title: SNP array data for a native European flat oyster (Ostrea edulis) population

description: Genotype data for a hatchery-derived European flat oyster population (n=840 individuals) with matching growth phenotype data (see link below). Four growth-related traits were measured in the experimental population: Body weight (BW, the weight of an individual oyster including the shell ), Shell length (SL, the maximum distance between the anterior and posterior margins), Shell height (SH, the maximum distance between the hinge to the furthermost edge), and Shell width (SW, the maximum distance at the thickest part of the two shell valves).
Individual oysters were genotyped using the combined-species Affymetrix Axiom® oyster SNP-array. The genotype data is available in VCF format for markers passing quality control (QC) filters (see steps below).
DOI: 10.5281/zenodo.6760986
title: Supplemental data for "Circular utilization of urban tree waste contributes to the mitigation of climate change and eutrophication"

description: Supplemental data for "Circular utilization of urban tree waste contributes to the mitigation of climate change and eutrophication"
DOI: 10.5281/zenodo.6760985
title: Supplemental data for "Circular utilization of urban tree waste contributes to the mitigation of climate change and eutrophication"

description: Supplemental data for "Circular utilization of urban tree waste contributes to the mitigation of climate change and eutrophication"
DOI: 10.17632/m9t772c475.1
title: LINF_290024300

description: paraflagellar rod protein 1D | PFR1
Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.20161343
title: Moretti JCM. Fracture and impaction features. Journal contribution. 2022.

description: This is the supplementari data relative to fracture and impaccion features to the aricle entitled "Does the position of the third molar have an influence on the location of mandibular fractures?
DOI: 10.6084/m9.figshare.20006556.v1
title: Kepler_PRSA from Curved schemes for stochastic differential equations on, or near, manifolds

description: Code used to produce Kepler graph and table in paper
DOI: 10.6084/m9.figshare.20006556
title: Kepler_PRSA from Curved schemes for stochastic differential equations on, or near, manifolds

description: Code used to produce Kepler graph and table in paper
DOI: 10.6084/m9.figshare.20161387
title: Duffing_PRSA from Curved schemes for stochastic differential equations on, or near, manifolds

description: Code used to produce Duffing graph and table in paper
DOI: 10.6084/m9.figshare.20161387.v1
title: Duffing_PRSA from Curved schemes for stochastic differential equations on, or near, manifolds

description: Code used to produce Duffing graph and table in paper
DOI: 10.6084/m9.figshare.20161393
title: MonteCarlo_PRSA from Curved schemes for stochastic differential equations on, or near, manifolds

description: Code used to produce graphs for Monte Carlo examples in paper
DOI: 10.6084/m9.figshare.20161396
title: Extra_Examples_PRSA from Curved schemes for stochastic differential equations on, or near, manifolds

description: Code used to produce graphs for BM on sphere and Hamiltonian
DOI: 10.6084/m9.figshare.20161396.v1
title: Extra_Examples_PRSA from Curved schemes for stochastic differential equations on, or near, manifolds

description: Code used to produce graphs for BM on sphere and Hamiltonian
DOI: 10.6084/m9.figshare.20161393.v1
title: MonteCarlo_PRSA from Curved schemes for stochastic differential equations on, or near, manifolds

description: Code used to produce graphs for Monte Carlo examples in paper
DOI: 10.17632/g9t7dvrgrv.1
title: LINF_290024700

description: paraflagellar rod protein 1D | PFR1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/3n33vpjxxd.1
title: LINF_290024400

description: paraflagellar rod protein 1D | PFR1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/yhnvhk6pmg.1
title: DATA COMPARATIVE ANALYSIS OF FAKE NEWS ABOUT COVID-19 FROM LATAMCHEQUEA IN LATIN AMERICA IN 2020.

description: This analysis, referring to LatamChequea in Latin America as an alliance of 30 fact-checking centers on distorted information related to COVID-19 throughout 2020, leads us to conclusions regarding the quality of information on this issue and the role of control by the fact-checking centers as spaces for verifying the quality of information on this topic today and on others in the future. Methodologically, the work continues the content analysis perspective, proposed by Salaverría et al., (2020) when analyzing fact-checking centers in Spain; it is fair to recognize that it is the conceptual foundation of this work.
DOI: 10.17632/znwx5skkhd.2
title: Data highlighting housekeeping gene variability during chikungunya virus infection

description: The data set represents the effect of chikungunya virus infection on the expression of five classical internal reference genes GusB, Beta-actin, HPRT, 18S rRNA and GAPDH. These genes are a part of crucial cellular processes. Usually, these genes demonstrate minimum variation in their expression unless some external stress is applied to the cell. Due to this characteristic, they are commonly used as reference genes for normalizing qPCR data. Hence, the objective of the study is to identify the suitable reference gene for gene expression studies during chikungunya virus infection.
Table1 demonstrates the qPCR efficiency of the primers used, which was determined by plotting the standard curve. The efficiency of all the primers was observed to be >90%. Table2 contains the Ct values of the uninfected (Control) and infected (Virus) samples of different housekeeping genes, the average of the triplicate of three biological replicates. Table3 mentions the sequence of primers used in the study. Fig.1 shows the modulation in the expression of housekeeping genes during chikungunya virus infection; GAPDH was found to be most consistent among the different genes with no significant change at the transcriptional level.
The results demonstrate a significant variation in the expression of four genes, GusB, Beta-actin, HPRT, and 18SrRNA, in response to chikungunya virus infection. The variation in these genes, which otherwise shows slight variation, suggests their involvement in viral pathogenesis. This could be because the variation in their expression may affect their underlying mechanism as they are a part of critical cellular processes. Another essential piece of information generated from the data highlights the stable expression of GAPDH; hence this could be the most suitable reference gene for the normalization of qPCR data during chikungunya virus infection. Since it is strongly recommended to validate the stable housekeeping gene before data normalization, the present data may serve as a reference for the researcher working on expression studies related to chikungunya virus infection. To the best of our knowledge, this is the first study validating the stable reference gene for the normalization of qPCR data during chikungunya virus infection.
DOI: 10.17632/c4sj6yctkd.1
title: Microstructural characterization data of as received IG-110, 2114 and ETU-10 nuclear graphite grades and oxidation characterization data of IG-110

description: This dataset contains transmission electron microscopy, scanning electron microscopy, and optical microscopy micrographs of nuclear graphite. These images show the microstructure of 3 nuclear graphite grades IG-110, 2114 and ETU-10. Part of the micrographs show the overall phases and general microstructure of graphite. Part of the optical microscopy data shows the effect of oxidation in nuclear graphite.
DOI: 10.17632/nmb24z6jrp.2
title: Large Grid of 1D X-ray Burst Models with MCMC Sample Chains

description: This dataset contains the primary data used in: "Multi-epoch X-ray burst modelling: MCMC with large grids of 1D simulations", Johnston et al. (2020).
In this work, we interpolated and sampled a grid of 3840 KEPLER burst models using Markov Chain Monte Carlo (MCMC) methods to produce posterior distributions for the system parameters of the "Clocked Burster", GS 1826-238.

Provided here is the full burst model grid and the raw MCMC sample chains.
More details on the files, and how to load them, are provided in README.md
DOI: 10.17632/tms6xgwbbx.2
title: A 5-year retrospective cohort study of basal cell carcinomas on the head and neck: anatomic location as a predictor of subclinical tumor extension

description: Supplementary Table 1, Supplementary Figures 1 - 5,
DOI: 10.21227/zksx-sd72
title: Tool-tissue Interaction Data for Arthroscopic Partial Meniscectomy Punch

description: This dataset contains tool-tissue interaction data from a series of partial meniscectomy punches, using an Acufex 1.5 mm upbiter punch. The data was collected from a cadaveric meniscus. The intended use of the data is haptic rendering of arthroscopic partial meniscectomy procedures.
DOI: 10.6084/m9.figshare.16733188
title: Data Eichel et al., submitted to Ecosphere

description: Data from plots in Mueller and Turtmann glacier forelands used in Eichel et al. (submitted to Ecosphere).<br> <br> Data structure follows Table S2 in the supporting information.<br>
DOI: 10.6084/m9.figshare.16733188.v1
title: Data Eichel et al., submitted to Ecosphere

description: Data from plots in Mueller and Turtmann glacier forelands used in Eichel et al. (submitted to Ecosphere).<br> <br> Data structure follows Table S2 in the supporting information.<br>
DOI: 10.17632/khm93dzhyz.1
title: Global Coral Reef Dataset

description: Global coral reef data from 2003-2016 used for Eason, T. and Garmestani, A. S.,  Assessing spatiotemporal change in  coral reef ecosystems. Under Review (IScience).

The data was culled from publicly accessible data gathered for a global bleaching study performed by Sully et al. 2019.  The full dataset is available at https://github.com/InstituteForGlobalEcology/Coral-bleaching-a-global-analysis-of-the-past-two-decades.

Reference:  Sully S, Burkepile DE, Donovan MK, Hodgson G, van Woesik R. A global analysis of coral bleaching over the past two decades. Nat Commun. 2019;10(1):1264
DOI: 10.17632/n33nmky7s4.1
title: 88 ECG signals with beats characteristics and extracted features

description: Supplementary data of 88 ECG signals with beats characteristics and classification features.
The supplementary data consists of:
1. SQLite database.
2. C# code explaining the procedure of querying data from the database.
DOI: 10.17632/jvs4nr5b74.2
title: Graphene and metal oxides composites: Application as toxic gas sensors

description: Modern advances in science and technology have improved the quality of human life and health significantly. Nevertheless, these advances also brought several problems. Among them, the need for real-time monitoring of toxic gases is one of the biggest and most alarming problems these days. There is a requirement for simple, sensitive, selective, and stable electronic sensors for either environmental monitoring or industrial applications. Graphene-based materials and nanostructured metal oxides have been pointed out as potential gas sensing materials due to its intrinsic large specific surface area and high electrical conductivity. More recently, nanocomposites have been prepared using graphene and nanostructured metal oxides. These nanocomposites are promising sensing materials because studies have shown they have good sensing properties close to room temperature. Additionally, laser-based techniques have attracted attention due to its great potential for synthesizing high-quality graphene-based devices. This methodology of synthesis have a great potential for mass production due to its rapid speed processing, nanometer spatial resolution and single-step process production that does not uses chemical reagents or high temperature. Within this context, this project proposes to study the sensing properties of nanocomposites fabricated with reduced graphene oxide and In2O3, ZnO e CuAlO2 nanoparticles Also, it is proposed to compare the sensing properties of sensors prepared with reduced graphene oxide obtained by traditional chemical route and by laser-based technique recently published.
DOI: 10.17632/rwcw59p9g2.5
title: Supplementary information for: "Multivariate Analysis for Assessing Spatio-Seasonal Variations of Surface Water Quality in Arkavathi Reservoir Catchment and Command Area, India"

description: To analyse the surface water quality of the area, we begin by identifying the sub-watersheds using Survey of India (SOI) Topographic Maps of 1:50,000 scale – 57 H5, 57 H6, 57 H7, 57 H9, 57 H10, 57 H11. Based on the drainage features of the area, the study area is demarcated into six sub-watersheds. Drainage map, Geology map, Contour map, and Digital Elevation Model (DEM) map are prepared using RS and GIS. Once the sub-watersheds are demarcated, surface water samples within these sub-watersheds are collected for further analysis as explained in the sections below. 30 samples were collected over a study period of two years covering three prominent seasons of pre-monsoon, monsoon, and post-monsoon periods. These samples were then subjected to various physical, chemical, and bacteriological tests such as pH, temp., DO, BOD, etc. (Bureau of Indian Standards: Public Safety Standards of the Republic of India: Chemical: Environmental Protection and Waste Management) to ascertain its usage for domestic purposes as well as for agricultural activities.
DOI: 10.5281/zenodo.6760338
title: All-atom accelerated molecular dynamics (aMD) simulations of Filamin-A (FLNa) actin-binding Domain, immunoglobulin-like Domains 3, 4, 5, 21 and 24 to investagate the impact of known missense mutations associated with periventricular nodular heterotopia in the liveborn males

description: Data includes all of the wild-type and mutant trajectories of accelerated all-atom molecular dynamics (aMD) simulations of Filamin-A (FLNa, the product of <em>FLNA</em> gene located on chromosome X). Wild-type proteins are from the PDB structures with IDs: 4M9P, 3HOP, 3CNK. The mutations, including R484Q that we discovered in a Turkish family, were formerly found in the liveborn males with <em>FLNA</em>-associated periventricular nodular heterotopia (PNH), who survived with the only copy of mutated <em>FLNA</em>. To understand how these mutations lead to the PNH and simultaneously allow their survival, we performed these MD simulations for the wild-type and mutant systems. Systems were prepared in Visual Molecular Dynamics (VMD 1.9.3) by placing them in a TIP3P water box with approximately 20 Å thickness from the protein surface and neutralizing the system by adding counter ions in the form of NaCl. Of note, only protein parts were kept for the submission to reduce the size of files. Nanoscale Molecular Dynamics (NAMD 2.13-CUDA) was used to perform MD simulations with CHARMM36m force field. For pressure and temperature controls, Nosé-Hoover Langevin barostat and Langevin thermostat were used. ShakeH algorithm of NAMD was applied for water molecule constraints. 12 Å cut-off distance was used for van der Waals interactions. Switching function starts at 10 Å and reaches zero at 14 Å. Integration time-step was 2 fs. To compute the long-range Coulomb interactions, the particle-mash Ewald method was used. After a 10000-step minimization with conjugate gradient algorithm and an equilibration for 1 ns at 298 K under NVT ensemble, production simulations were run along 100 ns. Only the production simulations were supplied in this dataset. Further details are available in the regarding configuration files. Resulting analysis files and scripts are included with the carbon alpha-containing dcd files of the simulations. This dataset is not used directly for any study, but they are preliminary results for the usage of aMD to understand rare disease mechanisms. Related publications: <pre>Zenodo repo of classical MD for these variants: https://doi.org/10.5281/zenodo.4483108</pre> Journal article based on classical MD: Gerlevik U, Saygı C, Cangül H, Kutlu A, Çaralan EF, Topçu Y, et al. (2022) Computational analysis of missense filamin-A variants, including the novel p.Arg484Gln variant of two brothers with periventricular nodular heterotopia. PLoS ONE 17(5): e0265400. https://doi.org/10.1371/journal.pone.0265400