cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3142321
title: TDRI_dataset.csv

description: The current dataset was published by Golino and Gomes (2015). It presents data from 1,803 Brazilians (52.5% female) with age varying from 5 to 85 years (M = 15.75; SD = 12.21) that answered to the Inductive Reasoning Developmental Test – IRDT (3rd version; Golino & Gomes, 2015), a pencil-and-paper instrument with 56 items designed to assess developmentally sequenced and hierarchically organized inductive reasoning.. The sequence of IRDT items was constructed to measure seven developmental stages based on the Model of Hierarchical Complexity (Commons & Richards, 1984; Commons & Pekker, 2008) and on Fischer’s Dynamic Skill Theory (Fischer, 1980; Fischer & Yan, 2002), two neo-Piagetian theories of development. Golino and Gomes (2015) showed that two structures can be used to describe the IRDT items. The first one is a seven correlated factors model [χ<sup>2</sup> (1463) = 764,28; p = 0,00; CFI = 1,00; RMSEA = 0,00; NFI = 0,99; NNFI = 1,00], in which each factor represents one stage and explains a group of eight items. The other is a bifactor (Schimid-Leiman) model with seven specific first order factors, each one representing one stage and explaining a group of eight items, plus a general first order factor directly explaining the IRDT’s 56 items [χ<sup>2</sup> (1428) = 2768,36; p = 0,00; CFI = 0,98; RMSEA = 0,04; NFI = 0,95; NNFI = 0,98]. The authors showed that both models are not significantly different, via the Satorra and Bentler’s (2001) scaled chi-square test [Δχ² = -99.87; ΔDF = 35; p = 1].<br>Reference: Golino, H. F., & Gomes, C. M. (2015). Investigando estágios de desenvolvimento do raciocínio indutivo usando a análise fatorial confimatória, o Modelo Logístico Simples de Rasch e o modelo de teste logístico linear (Rasch Estendido). In H. F. Golino, C. M. Gomes, A. Amantes, & G. Coelho, Psicometria Contemporânea: Compreendendo os Modelos Rasch (pp. 283-331). São Paulo: Casa do Psicólogo/Pearson.<br>
DOI: 10.6084/m9.figshare.3142324
title: Influence of oleic acid on rumen fermentation and fatty acid formation in vitro.doc

description: A series of batch cultures were conducted to investigate the effects of oleic acid (OA) on <i>in vitro</i> ruminal dry matter degradability (IVDMD), gas production, methane (CH<sub>4</sub>) and hydrogen (H<sub>2</sub>) production, and proportion of fatty acids. Rumen fluid was collected from fistulated goats, diluted with incubation buffer, and then incubated with 500 mg <i>Leymus chinensis</i> meal supplemented with different amounts of OA (0, 20, 40, and 60 mg for the CON, OA20, OA40 and OA60 groups, respectively). Incubation was carried out anaerobically at 39℃ for 48 h, and the samples were taken at 12, 24 and 48 h and subjected to laboratory analysis.
DOI: 10.6084/m9.figshare.3142312
title: ATRX binds to atypical chromatin domains at the 3′ exons of zinc finger genes to preserve H3K9me3 enrichment

description: ATRX is a SWI/SNF chromatin remodeler proposed to govern genomic stability through the regulation of repetitive sequences, such as rDNA, retrotransposons, and pericentromeric and telomeric repeats. However, few direct ATRX target genes have been identified and high-throughput genomic approaches are currently lacking for ATRX. Here we present a comprehensive ChIP-sequencing study of ATRX in multiple human cell lines, in which we identify the 3′ exons of zinc finger genes (ZNFs) as a new class of ATRX targets. These 3′ exonic regions encode the zinc finger motifs, which can range from 1–40 copies per ZNF gene and share large stretches of sequence similarity. These regions often contain an atypical chromatin signature: they are transcriptionally active, contain high levels of H3K36me3, and are paradoxically enriched in H3K9me3. We find that these ZNF 3′ exons are co-occupied by SETDB1, TRIM28, and ZNF274, which form a complex with ATRX. CRISPR/Cas9-mediated loss-of-function studies demonstrate (i) a reduction of H3K9me3 at the ZNF 3′ exons in the absence of ATRX and ZNF274 and, (ii) H3K9me3 levels at atypical chromatin regions are particularly sensitive to ATRX loss compared to other H3K9me3-occupied regions. As a consequence of ATRX or ZNF274 depletion, cells with reduced levels of H3K9me3 show increased levels of DNA damage, suggesting that ATRX binds to the 3′ exons of ZNFs to maintain their genomic stability through preservation of H3K9me3.
DOI: 10.6084/m9.figshare.3142324.v1
title: Influence of oleic acid on rumen fermentation and fatty acid formation in vitro.doc

description: A series of batch cultures were conducted to investigate the effects of oleic acid (OA) on <i>in vitro</i> ruminal dry matter degradability (IVDMD), gas production, methane (CH<sub>4</sub>) and hydrogen (H<sub>2</sub>) production, and proportion of fatty acids. Rumen fluid was collected from fistulated goats, diluted with incubation buffer, and then incubated with 500 mg <i>Leymus chinensis</i> meal supplemented with different amounts of OA (0, 20, 40, and 60 mg for the CON, OA20, OA40 and OA60 groups, respectively). Incubation was carried out anaerobically at 39℃ for 48 h, and the samples were taken at 12, 24 and 48 h and subjected to laboratory analysis.
DOI: 10.6084/m9.figshare.3142312.v1
title: ATRX binds to atypical chromatin domains at the 3′ exons of zinc finger genes to preserve H3K9me3 enrichment

description: ATRX is a SWI/SNF chromatin remodeler proposed to govern genomic stability through the regulation of repetitive sequences, such as rDNA, retrotransposons, and pericentromeric and telomeric repeats. However, few direct ATRX target genes have been identified and high-throughput genomic approaches are currently lacking for ATRX. Here we present a comprehensive ChIP-sequencing study of ATRX in multiple human cell lines, in which we identify the 3′ exons of zinc finger genes (ZNFs) as a new class of ATRX targets. These 3′ exonic regions encode the zinc finger motifs, which can range from 1–40 copies per ZNF gene and share large stretches of sequence similarity. These regions often contain an atypical chromatin signature: they are transcriptionally active, contain high levels of H3K36me3, and are paradoxically enriched in H3K9me3. We find that these ZNF 3′ exons are co-occupied by SETDB1, TRIM28, and ZNF274, which form a complex with ATRX. CRISPR/Cas9-mediated loss-of-function studies demonstrate (i) a reduction of H3K9me3 at the ZNF 3′ exons in the absence of ATRX and ZNF274 and, (ii) H3K9me3 levels at atypical chromatin regions are particularly sensitive to ATRX loss compared to other H3K9me3-occupied regions. As a consequence of ATRX or ZNF274 depletion, cells with reduced levels of H3K9me3 show increased levels of DNA damage, suggesting that ATRX binds to the 3′ exons of ZNFs to maintain their genomic stability through preservation of H3K9me3.
DOI: 10.6084/m9.figshare.3142240
title: Workplace Safety Interventions for Commercial Fishermen of the Gulf

description: Commercial fishing continues to have one of the highest rates of occupational fatalities compared with other work sectors in the United States. Attitudes/beliefs among Vietnamese shrimp fishermen of the Gulf of Mexico may influence behaviors that are risk factors for fatal and nonfatal injuries. The study employs a community trial with quasi-experimental pretest/posttest intervention design. An advisory group made up of key stakeholders including representatives from the US Coast Guard was assembled. A survey was designed using the Theory of Planned Behavior as the theoretical framework. Three community groups at port sites along the Texas/Louisiana Gulf Coasts were identified. Focus groups were convened at each site to select priority areas for risk intervention using training and awareness measures. Initial and follow-up surveys were administered pre-/post-interventions for each of the three community groups (2008, <i>n</i> = 217 completed surveys; 2012, <i>n</i> = 206 completed surveys). The follow-up survey was condensed and “intent to act” questions were added for the priority concerns identified (noise-induced hearing loss, machinery/winches, and fatigue). Statistically significant changes (<i>P</i> ranging from .000 to .042) were observed in selective attitude/belief responses for hearing/noise and fatigue. Intent to action or to adopt the intervention was high among all three groups of shrimp fishermen (hearing conservation, 82.4%; machinery/winch safety, 94.6%; fatigue awareness, 95.3%). Simple, yet culturally appropriate training and awareness measures in the form of visual and written safety messages favorably influence attitudes, beliefs, and behavioral intent related to priority risk factors identified by Vietnamese commercial shrimp fishermen along the Texas and Louisiana Gulf Coasts.
DOI: 10.6084/m9.figshare.3142240.v1
title: Workplace Safety Interventions for Commercial Fishermen of the Gulf

description: Commercial fishing continues to have one of the highest rates of occupational fatalities compared with other work sectors in the United States. Attitudes/beliefs among Vietnamese shrimp fishermen of the Gulf of Mexico may influence behaviors that are risk factors for fatal and nonfatal injuries. The study employs a community trial with quasi-experimental pretest/posttest intervention design. An advisory group made up of key stakeholders including representatives from the US Coast Guard was assembled. A survey was designed using the Theory of Planned Behavior as the theoretical framework. Three community groups at port sites along the Texas/Louisiana Gulf Coasts were identified. Focus groups were convened at each site to select priority areas for risk intervention using training and awareness measures. Initial and follow-up surveys were administered pre-/post-interventions for each of the three community groups (2008, <i>n</i> = 217 completed surveys; 2012, <i>n</i> = 206 completed surveys). The follow-up survey was condensed and “intent to act” questions were added for the priority concerns identified (noise-induced hearing loss, machinery/winches, and fatigue). Statistically significant changes (<i>P</i> ranging from .000 to .042) were observed in selective attitude/belief responses for hearing/noise and fatigue. Intent to action or to adopt the intervention was high among all three groups of shrimp fishermen (hearing conservation, 82.4%; machinery/winch safety, 94.6%; fatigue awareness, 95.3%). Simple, yet culturally appropriate training and awareness measures in the form of visual and written safety messages favorably influence attitudes, beliefs, and behavioral intent related to priority risk factors identified by Vietnamese commercial shrimp fishermen along the Texas and Louisiana Gulf Coasts.
DOI: 10.6084/m9.figshare.3142225
title: Species differentiation in the genus <i>Chara</i> (Charophyceae): considerable phenotypic plasticity occurs within homogenous genetic groups

description: Charophytes are benthic algae with a complex morphology and high phenotypic plasticity. This has led to ambiguities in species delineation. However, until now genetic studies on <i>Chara</i> have been based on samples collected from a restricted geographic range or only included a restricted number of taxa. This may have hindered a general interpretation of the results. We applied barcoding of <i>matK</i>, a rapidly evolving coding section of the plastid genome, in 324 <i>Chara</i> samples collected from 19 countries, in order to test whether the distribution of barcode haplotypes among individuals was consistent with species boundaries as they are currently understood. The phylogenetic tree grouped the 324 <i>Chara</i> individuals, which according to commonly used identification keys represented 29 species, into 12 well-defined groups (i.e. monophyletic morphospecies or groups of morphospecies). Considerable morphological variation occurred within genetically homogeneous groups. This included traits which are commonly used for <i>Chara</i> species determination, such as the length and number of spine cells, the length of stipulodes and bract cells, cortication (tylacanthous, isostichous, aulacanthous and absent cortication), as well as sex differentiation. However, there were also substantial genetic differences among morphologically similar species (e.g. <i>C. virgata</i> – <i>C. globularis – C. connivens</i>). No morphological trait consistently reflected genetic differences. This indicates that morphological traits for specific taxa may serve as diagnostic tools for species delimitation, but that they are not generally suitable for inferring genetic differentiation or phylogenetic relationships. We propose that (i) <i>C. virgata</i> and <i>C. strigosa</i>, (ii) <i>C. liljebladii, C. horrida</i> and <i>C. baltica</i>, and (iii) <i>C. hispida, C. rudis</i> and <i>C. polyacantha</i> are conspecific. Our data also indicate that <i>C. gymnophylla</i> should be divided into tylacanthous forms (which are closely related to <i>C. contraria</i>) and aulacanthous forms (which are related to <i>C. vulgaris</i>).
DOI: 10.6084/m9.figshare.3142132
title: WOMEN AND THE LAW: THE CONSTRUCTION OF GENDER EQUALITY IN THE BRAZILIAN LEGAL SYSTEM

description: The aim of this study is to conduct a historical analysis of the construction of gender equality in Brazil, emphasizing the trajectory performed by the women's movement to have secured the main Brazilian constitutions, the rights inherent to women and minorities classes considered from the point of view of history they were broken 97 down, and put a level of inequality in relation to men. Far It will be an analysis of the mechanisms and devices that have been the basis for the implementation of human rights in the country; among them was elencada the Declaration of Human Rights of 1948, which reflected the right one in the constitutionalisation of minority rights inherent ace classes, which until then were somewhat sidelined.
DOI: 10.6084/m9.figshare.3142204.v1
title: 20 September 2014 Field Notes

description: Field notes including image and/or video records.
DOI: 10.6084/m9.figshare.3142132.v1
title: WOMEN AND THE LAW: THE CONSTRUCTION OF GENDER EQUALITY IN THE BRAZILIAN LEGAL SYSTEM

description: The aim of this study is to conduct a historical analysis of the construction of gender equality in Brazil, emphasizing the trajectory performed by the women's movement to have secured the main Brazilian constitutions, the rights inherent to women and minorities classes considered from the point of view of history they were broken 97 down, and put a level of inequality in relation to men. Far It will be an analysis of the mechanisms and devices that have been the basis for the implementation of human rights in the country; among them was elencada the Declaration of Human Rights of 1948, which reflected the right one in the constitutionalisation of minority rights inherent ace classes, which until then were somewhat sidelined.
DOI: 10.6084/m9.figshare.3142204.v2
title: 20 September 2014 Field Notes

description: Field notes including image and/or video records.
DOI: 10.6084/m9.figshare.3142120
title: Analysis of gene expression in mouse brain regions after exposure to 1.9 GHz radiofrequency fields

description: <b>Purpose</b>: To assess 1.9 GHz radiofrequency (RF) field exposure on gene expression within a variety of discrete mouse brain regions using whole genome microarray analysis. <b>Materials and methods</b>: Adult male C57BL/6 mice were exposed to 1.9 GHz pulse-modulated or continuous-wave RF fields for 4 h/day for 5 consecutive days at whole body average (WBA) specific absorption rates of 0 (sham), ∼0.2 W/kg and ∼1.4 W/kg. Total RNA was isolated from the auditory cortex, amygdala, caudate, cerebellum, hippocampus, hypothalamus, and medial prefrontal cortex and differential gene expression was assessed using Illumina MouseWG-6 (v2) BeadChip arrays. Validation of potentially responding genes was conducted by RT-PCR. <b>Results</b>: When analysis of gene expression was conducted within individual brain regions when controlling the false discovery rate (FDR), no differentially expressed genes were identified relative to the sham control. However, it must be noted that most fold changes among groups were observed to be less than 1.5-fold and this study had limited ability to detect such small changes. While some genes were differentially expressed without correction for multiple-comparisons testing, no consistent pattern of response was observed among different RF-exposure levels or among different RF-modulations. <b>Conclusions</b>: The current study provides the most comprehensive analysis of potential gene expression changes in the rodent brain in response to RF field exposure conducted to date. Within the exposure conditions and limitations of this study, no convincing evidence of consistent changes in gene expression was found in response to 1.9 GHz RF field exposure.
DOI: 10.6084/m9.figshare.3142120.v1
title: Analysis of gene expression in mouse brain regions after exposure to 1.9 GHz radiofrequency fields

description: <b>Purpose</b>: To assess 1.9 GHz radiofrequency (RF) field exposure on gene expression within a variety of discrete mouse brain regions using whole genome microarray analysis. <b>Materials and methods</b>: Adult male C57BL/6 mice were exposed to 1.9 GHz pulse-modulated or continuous-wave RF fields for 4 h/day for 5 consecutive days at whole body average (WBA) specific absorption rates of 0 (sham), ∼0.2 W/kg and ∼1.4 W/kg. Total RNA was isolated from the auditory cortex, amygdala, caudate, cerebellum, hippocampus, hypothalamus, and medial prefrontal cortex and differential gene expression was assessed using Illumina MouseWG-6 (v2) BeadChip arrays. Validation of potentially responding genes was conducted by RT-PCR. <b>Results</b>: When analysis of gene expression was conducted within individual brain regions when controlling the false discovery rate (FDR), no differentially expressed genes were identified relative to the sham control. However, it must be noted that most fold changes among groups were observed to be less than 1.5-fold and this study had limited ability to detect such small changes. While some genes were differentially expressed without correction for multiple-comparisons testing, no consistent pattern of response was observed among different RF-exposure levels or among different RF-modulations. <b>Conclusions</b>: The current study provides the most comprehensive analysis of potential gene expression changes in the rodent brain in response to RF field exposure conducted to date. Within the exposure conditions and limitations of this study, no convincing evidence of consistent changes in gene expression was found in response to 1.9 GHz RF field exposure.
DOI: 10.6084/m9.figshare.3142204.v3
title: 20 September 2014 Field Notes

description: Field notes including image and/or video records.
DOI: 10.6084/m9.figshare.3142084
title: Species complex or complex species? Integrative taxonomy of the land snail genus <i>Rossmaessleria</i> (Gastropoda, Helicidae) from Morocco and Gibraltar

description: We applied an integrative approach to re-evaluate the taxonomy of the conchologically highly diverse land snail genus <i>Rossmaessleria</i> from the Rif Mountains in Morocco and from Gibraltar, which has been classified into 12 nominal species so far. An analysis of <i>cox1</i> and 16S rDNA sequences using the General Mixed Yule-coalescent approach with a single or multiple thresholds, its Bayesian implementation as well as the Automatic Barcode Gap Discovery method indicated that all <i>Rossmaessleria</i> populations can be classified into a single species, <i>R. scherzeri</i> (Zelebor, 1867). This result is confirmed by the lack of diagnostic differences in the genitalia as shown in a principal component analysis of the genital measurements. The variation of shell characters also does not allow an unambiguous subdivision of the complex. However, the populations of a mountain or a mountain ridge share characteristic combinations of shell characters so that they can be classified as geographic subspecies. The delimitation of the subspecies and their distribution is discussed and three subspecies are described as new to science: <i>R</i>. <i>scherzeri periclitata</i> ssp. nov. <i>R</i>. <i>scherzeri ingae</i> ssp. nov., and <i>R</i>. <i>scherzeri eleanorae</i> ssp. nov. http://zoobank.org/urn:lsid:zoobank.org:pub:187FE235-A257-423F-8FC3-957117546400
DOI: 10.6084/m9.figshare.3142078
title: A systematic literature review on modular product design

description: The product architecture has a significant influence on all phases of the product life cycle. Many literature sources claim modular product design offers a large range of advantages for addressing this influence. For example, it enables mass customisation, allows environmentally friendly end-of-life strategies, reduces development costs and allows efficient work in loosely coupled organisations. However, the generally low level of justification of these advantages together with the lack of commonly accepted theoretical references leads to a rather scattered view of the potential of modularisation. Moreover, the diversity of methodological approaches and the lack of common vocabulary represent a challenge for standardisation of practices and may hinder systematic implementation in product development. In particular, more guidance may be required to allow product development teams to choose the right modularisation approach that fits in with their objectives. This article summarises published literature in order to introduce a common language in the field of product modularisation and to build the theoretical basis of a multi-purpose approach – termed ‘modularization for X’. It is based on a systematic literature review covering a corpus of 163 publications, provides a structured compilation of drivers, design principles and metrics for modularisation, and identifies challenges for further research efforts.
DOI: 10.6084/m9.figshare.3142084.v1
title: Species complex or complex species? Integrative taxonomy of the land snail genus <i>Rossmaessleria</i> (Gastropoda, Helicidae) from Morocco and Gibraltar

description: We applied an integrative approach to re-evaluate the taxonomy of the conchologically highly diverse land snail genus <i>Rossmaessleria</i> from the Rif Mountains in Morocco and from Gibraltar, which has been classified into 12 nominal species so far. An analysis of <i>cox1</i> and 16S rDNA sequences using the General Mixed Yule-coalescent approach with a single or multiple thresholds, its Bayesian implementation as well as the Automatic Barcode Gap Discovery method indicated that all <i>Rossmaessleria</i> populations can be classified into a single species, <i>R. scherzeri</i> (Zelebor, 1867). This result is confirmed by the lack of diagnostic differences in the genitalia as shown in a principal component analysis of the genital measurements. The variation of shell characters also does not allow an unambiguous subdivision of the complex. However, the populations of a mountain or a mountain ridge share characteristic combinations of shell characters so that they can be classified as geographic subspecies. The delimitation of the subspecies and their distribution is discussed and three subspecies are described as new to science: <i>R</i>. <i>scherzeri periclitata</i> ssp. nov. <i>R</i>. <i>scherzeri ingae</i> ssp. nov., and <i>R</i>. <i>scherzeri eleanorae</i> ssp. nov. http://zoobank.org/urn:lsid:zoobank.org:pub:187FE235-A257-423F-8FC3-957117546400