cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/6v8uhj
title: Sixty years after “ A review of the genera of the family Tydeidae ” (Acariformes: Tydeoidea: Tydeidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article André K, Henri M. (2025): Sixty years after “ A review of the genera of the family Tydeidae ” (Acariformes: Tydeoidea: Tydeidae). Acarologia 65 (1): 149-172, DOI: 10.24349/l5vb-767l, URL: https://doi.org/10.24349/l5vb-767lABSTRACTThe goal of this paper is to present an overview of the genera of the prostigmatic mite family Tydeidae 60 years after the appearance of E.W. Baker’s seminal paper on the family (1965), and to define in systematic and scientific terms the genera within the superfamily Tydeoidea. Cumulative curves are given for genera, species and names. The number of morphospecies is estimated to be around 11,600 of which 3.72% have been described. Evolutionary plasticity and a new concept of the family are explored. The revised family is considered here to contain 31 genera and 3 non-nominal subgenera. Nomenclatural changes are noted in families, genera, subgenera and species: Bakerlasiotydaeus n. gen. (moved to Iolinidae, Tydaeolinae); Neoafrotydeus n. gen. (Tydeidae); Neohomeotydeus n. gen. (replaces Homeotydeus not in accordance with ICZN); Afrotydeus, junior synonym of Tydeus (n. syn.); Paralorryia, junior synonym of Calotydeus (n. syn.); Pertydeus, subgenus of Tydeus (rest. comb.); Quadrotydeus, subgenus of Brachytydeus (rest. comb.), Eotydeus, subgenus of Brachytydeus (n. comb.), Bakerlasiotydaeus. krantzi n. comb. (Iolinidae); Tydeus nieukerkeni (justified emendation) and Homeotydeus formosus (gender agreement). A table allowing the identification of female tydeid genera and subgenera is presented.
DOI: 10.15468/pgmjgs
title: New and interesting spiders (Arachnida, Araneae) from Vashlovani National Park and Chachuna Managed Reserve (Georgia)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Seropian, Armen, Bulbulashvili, Natalia, Makharadze, Giorgi, Baznikin, Andrei (2024): New and interesting spiders (Arachnida, Araneae) from Vashlovani National Park and Chachuna Managed Reserve (Georgia). Caucasiana 3: 183-213, DOI: 10.3897/caucasiana.3.e132501AbstractSpiders collected individually between 19–23 May 2024 during a trip to Vashlovani National Park and Chachuna Managed Reserve were determined, resulting in 24 species, of which two species are described as new: Synema inexpectata sp. nov. (Thomisidae) and Prodidomus trihelicoides sp. nov. (Prodidomidae). Ten species - Acanthinozodium parysatis Zamani & Marusik, 2021 (Zodariidae), Berlandina nabozhenkoi Ponomarev & Tsvetkov, 2006, Cryptodrassus helvolus (O. Pickard-Cambridge, 1872), Synaphosus palearcticus Ovtsharenko, Levy & Platnick, 1994, Synaphosus turanicus Ovtsharenko, Levy & Platnick, 1994, Talanites involutus (O. Pickard-Cambridge, 1885), Turkozelotes attavirus Chatzaki, 2019 (all Gnaphosidae), Evarcha armeniaca Logunov, 1999 (Salticidae), Lycosa soboutii Shafaie, Nadolny & Mirshamsi, 2022 (Lycosidae), Rhysodromus rikhteri (Logunov & Huseynov, 2008) (Philodromidae), and Sardinidion blackwalli (O. Pickard-Cambridge, 1871) (Theridiidae) are recorded in Georgia for the first time, of which six species and three genera are new to the Caucasus region. The male of L. soboutii is described for the first time. Diagnostic drawings of preserved specimens and first photos of several preserved and alive species are provided along with the detailed collecting data.
DOI: 10.3886/e241703
title: Economic Consequences of the 1933 Soviet Famine

description: This article studies the changes in the Soviet population and the urbanization patterns after the 1933 famine. It documents several new facts. (1) Although most of the direct victims lived in rural areas, the famine is associated with persistent differences in the urban population. Comparing more affected areas to less affected ones, in the long run, there are no differences in the rural population, but urban settlements in more affected areas are comparatively smaller. (2) Consistent with this pattern, in the long run, there are no differences in grain production and sown area, but electricity production is relatively smaller in more affected areas. (3) These differences were not planned in the First Five-Year Plan (1928–1933), but subsequent plans may have incorporated and exacerbated the differences in urbanization that occurred during the years of rural crisis. The paper argues that labor shortages during the crucial years of rapid industrialization hindered the development of cities in famine-stricken areas. Thus, the timing of the shock to the population is important. While established urban networks tend to recover from large temporary negative shocks, labor shortages during construction and rapid growth might have a permanent negative impact.
description: Provinces (oblasti) and cities and towns (urban-type settlements) in Russia, Ukraine, and Belarus.
description: data collected from published statistical books and archives
DOI: 10.3886/e241703v1
title: Economic Consequences of the 1933 Soviet Famine

description: This article studies the changes in the Soviet population and the urbanization patterns after the 1933 famine. It documents several new facts. (1) Although most of the direct victims lived in rural areas, the famine is associated with persistent differences in the urban population. Comparing more affected areas to less affected ones, in the long run, there are no differences in the rural population, but urban settlements in more affected areas are comparatively smaller. (2) Consistent with this pattern, in the long run, there are no differences in grain production and sown area, but electricity production is relatively smaller in more affected areas. (3) These differences were not planned in the First Five-Year Plan (1928–1933), but subsequent plans may have incorporated and exacerbated the differences in urbanization that occurred during the years of rural crisis. The paper argues that labor shortages during the crucial years of rapid industrialization hindered the development of cities in famine-stricken areas. Thus, the timing of the shock to the population is important. While established urban networks tend to recover from large temporary negative shocks, labor shortages during construction and rapid growth might have a permanent negative impact.
description: Provinces (oblasti) and cities and towns (urban-type settlements) in Russia, Ukraine, and Belarus.
description: data collected from published statistical books and archives
DOI: 10.15468/dl.944xts
title: Occurrence Download

description: A dataset containing 45988 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_1_GID","value":"CAN.2_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 45988 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067179-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/u9zd5t
title: Info Flora Schweiz - Crassulaceae

description: This dataset contains the digitized treatments in Plazi based on the original url / website Info Flora (2021): Info Flora Schweiz - Crassulaceae., URL: https://www.infoflora.ch/de/flora/crassulaceae.html
DOI: 10.15468/xzj98y
title: An updated synthesis of the Geophilomorpha (Chilopoda) of Asian Russia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dyachkov, Yurii V., Bonato, Lucio (2024): An updated synthesis of the Geophilomorpha (Chilopoda) of Asian Russia. ZooKeys 1198: 17-54, DOI: http://dx.doi.org/10.3897/zookeys.1198.119781, URL: http://dx.doi.org/10.3897/zookeys.1198.119781
DOI: 10.15468/txqjj6
title: The type specimens of Corvidae (Aves) in the Museum für Naturkunde at the Humboldt-University of Berlin, with the description of a new subspecies of Dendrocitta vagabunda

description: This dataset contains the digitized treatments in Plazi based on the original journal article Steinheimer, Frank D. (2009): The type specimens of Corvidae (Aves) in the Museum für Naturkunde at the Humboldt-University of Berlin, with the description of a new subspecies of Dendrocitta vagabunda. Zootaxa 2149 (1): 1-49, DOI: 10.11646/zootaxa.2149.1.1, URL: https://doi.org/10.11646/zootaxa.2149.1.1AbstractThe status of all type specimens of crows, raven, jays, magpies, treepies, and choughs (Corvidae) housed in the Museum für Naturkunde at the Humboldt-University of Berlin (ZMB) is discussed, including those specimens considered to be paralectotypes and paratypes. Each entry includes the history of the specimen, and, when necessary, its nomenclature and taxonomy. A brief overview is given of the impact of World War II on the bird collections of ZMB. Nomenclatural changes were instituted in two species groups: Lophocitta ardesiaca Bonaparte, 1850, is synonymized with Platylophus galericulatus galericulatus (Cuvier, 1816), and Platylophus galericulatus malaccensis Cabanis, 1866, becomes the valid name for the birds from the Malayan Peninsula formerly known as Platylophus galericulatus ardesiacus (Bonaparte, 1850). The holotype of Crypsirhina pallida Blyth, 1846, formerly believed lost, was located and identified as a senior synonym of Dendrocitta vagabunda vernayi and must replace the latter for birds from south-eastern and eastern Central India. This leaves the West and western Central Indian population of D. vagabunda unnamed for which a new subspecies name is proposed.
DOI: 10.15468/dl.arnt98
title: Occurrence Download

description: A dataset containing 120109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pararge aegeria",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1970",
 "Country is one of (Italy, Switzerland, Germany, Austria, Slovenia, France)"
 ]
}

 The dataset includes 120109 records from 809 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067173-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18065818
title: YuelPocket: Protein-ligand binding site prediction with graph neural network

description: Our Github repository: https://github.com/hust220/yuel_pocket

The benchmark.zip file contains the raw data of all our tests on the PLINDER, Holo4k, and Alphafold test sets.
DOI: 10.15468/dl.6hppkw
title: Occurrence Download

description: A dataset containing 16639 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lasiommata maera",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1970",
 "Country is one of (Italy, Switzerland, Germany, Austria, Slovenia, France)"
 ]
}

 The dataset includes 16639 records from 299 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067181-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bbny9w
title: Occurrence Download

description: A dataset containing 5801 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_1_GID","value":"CAN.4_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 5801 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067180-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/5hykdc
title: Dung beetle fauna from Mount Mabu, Mozambique. Part 1: A new species of Onthophagus Latreille, 1802, and a checklist of species belonging to group 3 (d’Orbigny 1913) (Coleoptera: Scarabaeidae: Scarabaeinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Strümpher, Gimo M. Daniel Werner P., Josso, Jean-François (2023): Dung beetle fauna from Mount Mabu, Mozambique. Part 1: A new species of Onthophagus Latreille, 1802, and a checklist of species belonging to group 3 (d’Orbigny 1913) (Coleoptera: Scarabaeidae: Scarabaeinae). Zootaxa 5258 (4): 429-442, DOI: 10.11646/zootaxa.5258.4.4, URL: http://dx.doi.org/10.11646/zootaxa.5258.4.4AbstractOnthophagus mabuensis Daniel, Str ̧mpher & Josso, new species, is diagnosed, described and illustrated from Mount Mabu, which is situated in north-central Mozambique. Morphological comparison is made between this new forest species and similar species from Malawi and Zambia in group 3 of Onthophagus Latreille, 1802, as classified by d’Orbigny (1913). In addition, we provide a checklist of all known group 3 species.
DOI: 10.15468/jaubjw
title: The Paepalanthoideae (Eriocaulaceae) of the Chapada dos Veadeiros National Park, Brazil: taxonomic novelties, identification key, and illustrated list of species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Trovó, Marcelo, Echternacht, Lívia (2022): The Paepalanthoideae (Eriocaulaceae) of the Chapada dos Veadeiros National Park, Brazil: taxonomic novelties, identification key, and illustrated list of species. European Journal of Taxonomy 834: 58-93, DOI: 10.5852/ejt.2022.834.1899, URL: http://dx.doi.org/10.5852/ejt.2022.834.1899Abstract. The Chapada dos Veadeiros National Park is a conservation unit established to preserve the highest savannahs of Central Brazil and their unique biodiversity. Eriocaulaceae are a relevant and conspicuous family in such high savannahs, but its diversity is poorly known, documented solely in general lists or in isolated efforts aimed at small groups. After a structured series of field expeditions and analysis of specimens from the relevant herbaria, we provide nomenclatural novelties, a first identification key, and an illustrated checklist for the species of Paepalanthoideae (Eriocaulaceae) in the area. We recorded 42 species of Paepalanthoideae from the Chapada dos Veadeiros National Park: Actinocephalus (Körn.) Sano (2 spp.), Comanthera L.B.Sm. (1 sp.), Paepalanthus Mart. (24 spp.), and Syngonanthus Ruhland (15 spp.). Actinocephalus brevifolius Trovó & Echtern. sp. nov. and P. irwinii Trovó & Echtern. sp. nov. are newly described species and P. politus Trovó stat. et nom. nov. is a variety of P. elongatus (Bong.) Körn. raised to the species status with a new name. The generic and specific composition shows predominance of Paepalanthus and Syngonanthus, and with a low representation of Actinocephalus and Comanthera, as expected, outside of the Espinhaço Range. More than 50% of the species (22 spp.) are endemic to the area and 25 species are endemic to Central Brazil, the area being the main center of diversity for dimerous-flowered groups. The non-endemic diversity is a combination of widespread species and marginal distribution of species typical from the Amazon and southeastern savannahs. The species are unevenly distributed in the area, with their occurrence correlated to altitude, water availability, and lithology. We reinforce that the savannahs from Central Brazil are a secondary center of diversity for Eriocaulaceae, playing a central role in the conservation of an unique and irreplaceable piece of its diversity and the Cerrado biome as well.
DOI: 10.5281/zenodo.17854282
title: Data deposition for scientific article "Destabilization of Structured RNAs by OPC and TIP4PD Water Models"

description: This dataset accompanies the scientific article "Destabilization of Structured RNAs by OPC and TIP4PD Water Models." It contains all molecular dynamics trajectories reported in the manuscript, along with the scripts and input files required to reproduce the calculations.

Due to Zenodo’s strict data-size limits, the deposited trajectory files are strided by a significant factor of at least 100 relative to the original data on which the analyses were performed. This could lead to confusion as the number of frames no longer corresponds to any specific simulation length.  For the exact simulation lengths, please refer to Table 1 in the main text. With the exception of the mixed water box simulations, all the trajectories are provided without water molecules.

For all scientific or technical inquiries regarding this dataset, please contact the corresponding author, Dr. Miroslav Krepl.

***IMPORTANT NOTE***. Due to technical issues, we were unable to upload some of the datasets to Zenodo. These issues occurred during the Christmas 2025 break, and we were unable to resolve them with Zenodo staff prior to the revision deadline (January 3, 2026). As a temporary solution, the two missing datasets are available at the following address:

https://owncloud.cesnet.cz/index.php/s/63qMW1vINF3Q4fk

Once these datasets can be uploaded to this Zenodo archive, an update notice will be posted.
DOI: 10.5281/zenodo.17854283
title: Data deposition for scientific article "Destabilization of Structured RNAs by OPC and TIP4PD Water Models"

description: This dataset accompanies the scientific article "Destabilization of Structured RNAs by OPC and TIP4PD Water Models." It contains all molecular dynamics trajectories reported in the manuscript, along with the scripts and input files required to reproduce the calculations.

Due to Zenodo’s strict data-size limits, the deposited trajectory files are strided by a significant factor of at least 100 relative to the original data on which the analyses were performed. This could lead to confusion as the number of frames no longer corresponds to any specific simulation length.  For the exact simulation lengths, please refer to Table 1 in the main text. With the exception of the mixed water box simulations, all the trajectories are provided without water molecules.

For all scientific or technical inquiries regarding this dataset, please contact the corresponding author, Dr. Miroslav Krepl.

***IMPORTANT NOTE***. Due to technical issues, we were unable to upload some of the datasets to Zenodo. These issues occurred during the Christmas 2025 break, and we were unable to resolve them with Zenodo staff prior to the revision deadline (January 3, 2026). As a temporary solution, the two missing datasets are available at the following address:

https://owncloud.cesnet.cz/index.php/s/63qMW1vINF3Q4fk

Once these datasets can be uploaded to this Zenodo archive, an update notice will be posted.
DOI: 10.15468/dykayn
title: Annotated Checklist of Tortoise Beetles of Trinidad and Tobago (Coleoptera: Chrysomelidae: Cassidinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Chaboo, C. S., Borowiec, L. (2003): Annotated Checklist of Tortoise Beetles of Trinidad and Tobago (Coleoptera: Chrysomelidae: Cassidinae). The Coleopterists Bulletin 57 (1): 71-78, DOI: 10.1649/0010-065X(2003)057[0071:ACOTBO]2.0.CO;2, URL: http://dx.doi.org/10.1649/0010-065x(2003)057[0071:acotbo]2.0.co;2AbstractCassidine chrysomelid species are listed for the Caribbean islands of Trinidad and Tobago, based on personal field collections, examination of museum collections and literature records. Localities and some host plant data are provided. Trinidad has 38 species in 19 genera from five tribes, with 15 new species records. Three species are endemic. Tobago has eight species in five genera from two tribes, including four new generic and species records. All species known from Tobago also occur on Trinidad. The first host plant data are given for Omocerus (Omocerus) taurus (Fabricius).
DOI: 10.5281/zenodo.16921377
title: YuelPocket: Protein-ligand binding site prediction with graph neural network

description: Our Github repository: https://github.com/hust220/yuel_pocket

The benchmark.zip file contains the raw data of all our tests on the PLINDER, Holo4k, and Alphafold test sets.
DOI: 10.15468/ht4lgi
title: The Ants (Hymenoptera: Formicidae) of Bol’shaya Svetlovodnaya (Late Eocene of Sikhote-Alin, Russian Far East)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dlussky, G. M., Rasnitsyn, A. P., Perfilieva, K. S. (2015): The Ants (Hymenoptera: Formicidae) of Bol’shaya Svetlovodnaya (Late Eocene of Sikhote-Alin, Russian Far East). Caucasian Entomological Bulletin 11 (1): 131-152
DOI: 10.5281/zenodo.18069937
title: TBA BPaL Access_ Data on the timelines, prices, volumes, interventions and actors involved v2.0

description: This file is an updated version of the dataset originally posted in July 2025 at https://zenodo.org/records/16571036. The worksheets in this spreadsheet provide the data underlying the statistics and figures in the article submitted to BMJ Global Health, "Orchestrating faster access to products of non-profit R&D: A case study of a novel regimen for drug-resistant tuberculosis," which is based on the longer research report "Orchestrating faster access to products of non-profit R&D: Insights from the case of BPaL/M for tuberculosis" published by the Global Health Centre, Geneva Graduate Institute (July 2025). Most of the data was collected and provided by the TB Alliance to the research team (Suerie Moon, Marcela Vieira, Kaitlin Large). The research team amended the figures and also collected the data for Figure 5.
DOI: 10.5281/zenodo.18069938
title: TBA BPaL Access_ Data on the timelines, prices, volumes, interventions and actors involved v2.0

description: This file is an updated version of the dataset originally posted in July 2025 at https://zenodo.org/records/16571036. The worksheets in this spreadsheet provide the data underlying the statistics and figures in the article submitted to BMJ Global Health, "Orchestrating faster access to products of non-profit R&D: A case study of a novel regimen for drug-resistant tuberculosis," which is based on the longer research report "Orchestrating faster access to products of non-profit R&D: Insights from the case of BPaL/M for tuberculosis" published by the Global Health Centre, Geneva Graduate Institute (July 2025). Most of the data was collected and provided by the TB Alliance to the research team (Suerie Moon, Marcela Vieira, Kaitlin Large). The research team amended the figures and also collected the data for Figure 5.