cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/y2yz5ngdm4.1
title: Fixation offset decreases pupillary inhibition of return.

description: Email: lukasz.michalczyk@ignatianum.edu.pl

About
=====

This archive contains the data of individual participants and the summarized data for two experiments. Full experimental details are described in:


Content
=====

## Two folders: 

-  'raw data' with edf files of each participant
- 'data prepared for analysis' with two behavioral files: behavioral_cue.xlsx and behavioral_gap_no_cue_xlsx (trials with/without cue presentation) and pupil measure: pupil.xlsx


## Relevant variables in `pupil.xlsx`:

- 'Recording session label' - subject number
- 'Trial_N': the ordinal number of a trial (without counting fixation break trials)
- 'Trial_Index': - the ordinal number of a trial from a pool of all trials (including fixation breaks)
- 'Bin index': the ordinary number of samples (20ms each)
- 'RT': reaction time on target (ms)
- 'Cond': condition (FIX=fixation trials, GAP=fixation offset trials, GAP_NO_CUE= trials where fixation point was removed and where cue was not presented)

- 'SOA': Stimulus onset Asynchrony (2000ms, 25000ms)
- 'Validity_n': type of trials (1 = cued; 2 = uncued and 0 = cue was no presented)
- 'Time' - time interval count from cue onset.
- 'Baseline_mean' - mean pupil size measured before cue onset
- 'Pupil' - pupil size measured after cue onset
- 'PUPIL_baseline': difference between baseline_mean and Pupil
- 'Condition1' - corresponds to the column termed: Condition1_name
- 'Condition2' - corresponds to the column termed: Condition2_name
- 'Condition3' - corresponds to the column termed: Condition3_name and Condition3_v2_name


## Relevant variables in `behavioral_cue.xlsx` and `behavioral_no_cue.xlsx`

- 'sub': number of participants
- 'TRIAL_N': ordinary number of a trial (without counting fixation break trials)
- 'con': condition (1=fixation trials; 2-fixation offset). Related to column 'condition_name'

- 'validity': 1=cued (valid), 2=uncued (invalid), 3= trials when the cue was not presented
- 'S': SOA (1=2000ms, 2=2500ms). Related to column 'soa_name'
- 'RT' - reaction time (ms)
- 'target': target presentation (left, right)
DOI: 10.17632/hknzpthjw2.1
title: Data-RL-MRezaeimozafar

description: On-site load demand and PV profile in kW obtained from smart meters installed in a residential unit in Tipperary from August 2021 - August 2022.
DOI: 10.17632/2zfgjy27wg.2
title: Microstructure and crystallographic texture data from modern giant clam shells (Tridacna squamosa and Hippopus hippopus)

description: Microstructure and crystallographic orientation data for the shells of the giant clams Tridacna squamosa and Hippopus hippopus.

A tabulated version of post-acquisition reanalysis using EBSD data is presented in Table 1 as a .XLSX file. This repository also contains raw SEM EBSD files (.CRC and .CPR format) for T. squamosa and H. hippopus, along with a script (.M) with code for EBSD data analysis and plotting carried out in MTex toolbox 5.7.0 for MATLAB R2022b. 
  
The files stored within the data repository are:  

SS02BCT.CRC: Raw EBSD dataset file for Tridacna squamosa (SS02BCT) 
SS01BSN.CRC: Raw EBSD dataset file for Hippopus hippopus (SS01BSN) 
SS02BCT.CPR: Raw EBSD dataset file for Tridacna squamosa (SS02BCT) 
SS01BSN.CPR: Raw EBSD dataset file for Hippopus hippopus (SS01BSN) 
EBSD_Tridacnidae.M: Code for EBSD data analysis and plotting 
Reflectors.XLSX: Table of post-acquisition reanalysis of EBSD patterns stored at indexing using manual selection of reflectors.
DOI: 10.17632/2zfgjy27wg.3
title: Microstructure and crystallographic texture data from modern giant clam shells (Tridacna squamosa and Hippopus hippopus)

description: Microstructure and crystallographic orientation data for the shells of the giant clams Tridacna squamosa and Hippopus hippopus.

A tabulated version of post-acquisition reanalysis using EBSD data is presented in Table 1 as a .XLSX file. This repository also contains raw SEM EBSD files (.CRC and .CPR format) for T. squamosa and H. hippopus, along with a script (.M) with simple example code for EBSD data analysis and plotting carried out in MTex toolbox 5.7.0 for MATLAB R2022b. 
  
The files stored within the data repository are:  

SS02BCT.CRC: Raw EBSD dataset file for Tridacna squamosa (SS02BCT) 
SS01BSN.CRC: Raw EBSD dataset file for Hippopus hippopus (SS01BSN) 
SS02BCT.CPR: Raw EBSD dataset file for Tridacna squamosa (SS02BCT) 
SS01BSN.CPR: Raw EBSD dataset file for Hippopus hippopus (SS01BSN) 
EBSD_Tridacnidae.M: Code for EBSD data analysis and plotting 
Reflectors.XLSX: Table of post-acquisition reanalysis of EBSD patterns stored at indexing using manual selection of reflectors.
DOI: 10.17632/2zfgjy27wg.4
title: Microstructure and crystallographic texture data from modern giant clam shells (Tridacna squamosa and Hippopus hippopus)

description: Microstructure and crystallographic orientation data for the shells of the giant clams Tridacna squamosa and Hippopus hippopus.

A tabulated version of post-acquisition reanalysis using EBSD data is presented in Table 1 as a .XLSX file. This repository also contains raw SEM EBSD files (.CRC, .CPR, .txt format) for T. squamosa and H. hippopus, along with a script (.M, .txt) with simple example code for EBSD data analysis and plotting carried out in MTex toolbox 5.7.0 for MATLAB R2022b. 
  
The files stored within the data repository are:  

•	SS02BCT.CRC: Raw EBSD dataset file for Tridacna squamosa (SS02BCT)
•	SS01BSN.CRC: Raw EBSD dataset file for Hippopus hippopus (SS01BSN)
•	SS02BCT.CPR: Raw EBSD dataset file for Tridacna squamosa (SS02BCT)
•	SS01BSN.CPR: Raw EBSD dataset file for Hippopus hippopus (SS01BSN)
•	SS02BCT.txt: Raw EBSD dataset file for Tridacna squamosa (SS02BCT)
•	SS01BSN.txt: Raw EBSD dataset file for Hippopus hippopus (SS01BSN)
•	EBSD_Tridacnidae.M: Code for EBSD data analysis and plotting.
•	EBSD_Tridacnidae.txt: Code for EBSD data analysis and plotting.
•	Reflectors.XLSX: Table of post-acquisition reanalysis of EBSD patterns stored at indexing using manual selection of reflectors.
DOI: 10.17632/2zfgjy27wg.1
title: Microstructure and crystallographic texture data from modern giant clam shells (Tridacna squamosa and Hippopus hippopus)

description: Microstructure and crystallographic orientation data for the shells of the giant clams Tridacna squamosa and Hippopus hippopus.

A tabulated version of post-acquisition reanalysis using EBSD data is presented in Table 1 as a .XLSX file. This repository also contains raw SEM EBSD files (.CRC and .CPR format) for T. squamosa and H. hippopus, along with a script (.M) with code for EBSD data analysis and plotting carried out in MTex toolbox 5.7.0 for MATLAB R2022b. 
  
The files stored within the data repository are:  

SS02BCT.CRC: Raw EBSD dataset file for Tridacna squamosa (SS02BCT) 
SS01BSN.CRC: Raw EBSD dataset file for Hippopus hippopus (SS01BSN) 
SS02BCT.CPR: Raw EBSD dataset file for Tridacna squamosa (SS02BCT) 
SS01BSN.CPR: Raw EBSD dataset file for Hippopus hippopus (SS01BSN) 
EBSD_Tridacnidae.M: Code for EBSD data analysis and plotting 
Reflectors.XLSX: Table of post-acquisition reanalysis of EBSD patterns stored at indexing using manual selection of reflectors.
DOI: 10.17632/gv4zxmfdx3.1
title: MP-CITDSE: A set of ab-initio programs for the simulation of hydrogenic and helium-like atom-laser interactions

description: MP-CITDSE is a package of programs which solves the time-dependent Schrödinger equation for hydrogenic and helium-like atomic systems interacting with an ultra-short laser pulse (of attosecond or femtosecond duration). The output of the computations – with some minimal processing – may be used to calculate excited populations, single and double ionisation yields, kinetic, angular and radial electron distributions, and harmonic yields. For the Helium atom, a full account of the inter-electronic correlation effects is included via a configuration interaction approach; for the time propagation of the wavefunction a spectral basis expansion on the eigenstates of the field-free Hamiltonian is used; for this reason post-processing of the expansion coefficients just after the pulse lead to simple formulas for quantities of experimental interest.
DOI: 10.17632/gnxmkygxrw.1
title: Program for quantum wave-packet dynamics with time-dependent potentials (new version announcement)

description: wavepacket is a program to simulate the dynamics of a wave packet interacting with a time-dependent potential, with the time-dependent Schrödinger equation being solved on a one-, two-, or three-dimensional spatial grid using the split operator method. This new version fixes bugs present in the original program.

The previous version of this program (AEQW_v1_0) may be found at https://doi.org/10.1016/j.cpc.2013.09.012.
DOI: 10.17632/fs7w7jb8mr.1
title: PhasicFlow: A parallel, multi-architecture open-source code for DEM simulations

description: PhasicFlow is an open-source code for DEM simulations developed in C++, licensed under GPL V-3.0 [www.github.com/PhasicFlow/phasicFlow]. It is parallelized based on shared-memory model and can be executed on multi-core CPUs or GPUs. The philosophy of its development is to provide an efficient, easy-to-use, and easy-to-extend tool for a wide range of hardware including cheap to high-end desktop computers. Here, the code structure, the most important features, its performance for simulating small to large problems (250,000 to 80,000,000 particles) on various hardware are presented. In all cases, the execution time varied linearly with number of particles that is ideal for DEM. The computation load per particle was almost constant for all problem sizes except for small simulations (higher). For CPU simulations, a good scaling was observed with number of cores, and scaling was closer to ideal state for larger simulations. The performance of PhasicFlow was compared with similar tools, wherever possible. It was shown that the performance of PhasicFlow is much higher than the similar tools in CPU execution mode and it is around 10–15% faster than similar tools in GPU execution mode. This new tool broadens the application of computer simulation to larger problems and allows researchers to perform DEM simulations on a wider range of hardware.
DOI: 10.48704/ird_mo4zr9b
title: Mo4Zr9B
DOI: 10.5066/p91bukx1
title: Conversion of CRP Grasslands to Cropland, Grazing Lands, or Hayland: Effects on Breeding Bird Abundances in the Northern Great Plains, 1996-2017, data release

description: The data set consists of bird abundance data collected in undisturbed grassland fields enrolled in the Conservation Reserve Program (CRP) and former CRP fields that were converted to cropland, grazing land, or hayland in nine counties in four states (Montana, North Dakota, South Dakota, and Minnesota) in the northern Great Plains. The study was initiated in 1990, but data were only included in this dataset for the 18 years in which all three of the post-CRP management practices occurred, i.e., 1996?2003 and 2008?2017. The data were summarized and used in the analysis for a peer-reviewed publication entitled: "Conversion of CRP Grasslands to Cropland, Grazing Lands, or Hayland: Effects on Breeding Bird Abundances." The data consist of one data set that includes county, state, field identification, year, management treatment (idle CRP, post-CRP cropland, post-CRP grazing land, and post-CRP hayland), field area (in hectares), and bird abundance (number of indicated breeding pairs) by species (listed by four-letter alpha codes for the 24 focal bird species observed during the study).
DOI: 10.48704/ird_mg5pd2
title: Mg5Pd2
DOI: 10.6084/m9.figshare.21828840
title: Agro-morphological traits-based genetic diversity assessment on oat (Avena sativa L.) genotypes in the central highlands of Ethiopia

description: Oat genetic diversity
DOI: 10.6084/m9.figshare.21828840.v3
title: Agro-morphological traits-based genetic diversity assessment on oat (Avena sativa L.) genotypes in the central highlands of Ethiopia

description: Oat genetic diversity
DOI: 10.6084/m9.figshare.21828840.v4
title: Agro-morphological traits-based genetic diversity assessment on oat (Avena sativa L.) genotypes in the central highlands of Ethiopia

description: Oat genetic diversity
DOI: 10.48704/ird_al5co2
title: Al5Co2
DOI: 10.48704/ird_zr3p
title: Zr3P
DOI: 10.48704/ird_zrmo2
title: ZrMo2
DOI: 10.6084/m9.figshare.23580462
title: <strong>Uncovering research patterns of a middle-income country: A Comprehensive Study of Peru's Specialized Health Institutes' Scientific Output</strong>

description: A bibliometric study was carried out on the scientific production of specialized health institutes in Peru. The units of analysis were the papers published in an indexed journal that underwent a peer-review process. The search was conducted in the databases of Web of Science (WoS), Embase, Scopus, and SciELO.
DOI: 10.6084/m9.figshare.23580462.v1
title: <strong>Uncovering research patterns of a middle-income country: A Comprehensive Study of Peru's Specialized Health Institutes' Scientific Output</strong>

description: A bibliometric study was carried out on the scientific production of specialized health institutes in Peru. The units of analysis were the papers published in an indexed journal that underwent a peer-review process. The search was conducted in the databases of Web of Science (WoS), Embase, Scopus, and SciELO.
DOI: 10.5281/zenodo.8067127
title: Supplementary data for "Genomic signatures of strawberry domestication and breeding" paper

description: <pre>############################################################################################ ## Supplementary data for "Genomic signatures of strawberry domestication and breeding" ## ## Author: Zhen Fan ## ## Date: 6/26/2023 ## ############################################################################################</pre> Octoploid strawberry SNP map (SNP.vcf.gz) includes filtered SNP using 289 individuals. GWAS_raw.zip includes raw data, BLUE estimates, genotyping data and marker positions for GWAS study of fruit size and yield.
DOI: 10.5281/zenodo.8067126
title: Supplementary data for "Genomic signatures of strawberry domestication and breeding" paper

description: <pre>############################################################################################ ## Supplementary data for "Genomic signatures of strawberry domestication and breeding" ## ## Author: Zhen Fan ## ## Date: 6/26/2023 ## ############################################################################################</pre> Octoploid strawberry SNP map (SNP.vcf.gz) includes filtered SNP using 289 individuals. GWAS_raw.zip includes raw data, BLUE estimates, genotyping data and marker positions for GWAS study of fruit size and yield.
DOI: 10.5281/zenodo.7671724
title: A Spectroscopic Study of Mars-Analog Materials with Amorphous Sulfate and Chloride Phases: Implications for Detecting Amorphous Materials on the Martian Surface

description: This repository contains the raw and baseline or continuum corrected data associated with the manuscript entitled: A Spectroscopic Study of Mars-Analog Materials with Amorphous Sulfate and Chloride Phases: Implications for Detecting Amorphous Materials on the Martian Surface This work is being submitted to The Planetary Science Journal ABSTRACT The Chemistry and Mineralogy X-ray diffraction (XRD) instrument aboard the Curiosity rover has consistently identified substantial amorphous material at Gale Crater. The amorphous component is compositionally variable, but often includes elevated sulfur and iron, suggesting that amorphous ferric sulfate (AFS) may be present. Understanding the spectral changes of common Martian materials exposed to ferric sulfate brines as they desiccate to AFS is a key step in bridging the gap between simple mixing studies and analyses of complex/realistic reaction assemblages. Visible and near-infrared reflectance (VNIR), mid-infrared attenuated total reflectance (MIR, FTIR-ATR), and Raman spectra, along with XRD data are presented for basaltic glass, hematite, gypsum, nontronite, and magnesite, each at three grain sizes (&lt;25, 25-63, and 63-180 μm), mixed with ferric sulfate alone or also with NaCl, hydrated through deliquescence, and then rapidly desiccated in 11% relative humidity or via vacuum. All desiccated products are partially or completely XRD amorphous; crystalline phases include starting materials and trace precipitates, leaving the bulk of the ferric sulfate in the amorphous fraction. Due to considerable spectral masking, the detectability of AFS is highly dependent on spectroscopic technique and the observed mineral assemblage. This has strong implications for remote and in-situ observations of Martian samples which include an amorphous component. AFS is only identifiable in VNIR spectra for magnesite, nontronite, and gypsum samples; hematite and basaltic glass samples appear similar to pure materials. Sulfate features dominate Raman spectra for nontronite and basaltic glass samples; the analog material dominates Raman spectra of hematite and gypsum samples. MIR spectra reveal all end members most clearly except for basaltic glass samples, where the analog material is almost completely masked. NaCl leads to similar FTIR-ATR and Raman features, regardless of analog material. Associated photographs of samples in this project can be found at: https://www.lionsandlamms.com/ This research was supported by NSF award #1819209.
description: For more information please email Elizabeth Sklute: elizabeth.sklute@gmail.com
DOI: 10.5281/zenodo.7671723
title: A Spectroscopic Study of Mars-Analog Materials with Amorphous Sulfate and Chloride Phases: Implications for Detecting Amorphous Materials on the Martian Surface

description: This repository contains the raw and baseline or continuum corrected data associated with the manuscript entitled: A Spectroscopic Study of Mars-Analog Materials with Amorphous Sulfate and Chloride Phases: Implications for Detecting Amorphous Materials on the Martian Surface This work is being submitted to The Planetary Science Journal ABSTRACT The Chemistry and Mineralogy X-ray diffraction (XRD) instrument aboard the Curiosity rover has consistently identified substantial amorphous material at Gale Crater. The amorphous component is compositionally variable, but often includes elevated sulfur and iron, suggesting that amorphous ferric sulfate (AFS) may be present. Understanding the spectral changes of common Martian materials exposed to ferric sulfate brines as they desiccate to AFS is a key step in bridging the gap between simple mixing studies and analyses of complex/realistic reaction assemblages. Visible and near-infrared reflectance (VNIR), mid-infrared attenuated total reflectance (MIR, FTIR-ATR), and Raman spectra, along with XRD data are presented for basaltic glass, hematite, gypsum, nontronite, and magnesite, each at three grain sizes (&lt;25, 25-63, and 63-180 μm), mixed with ferric sulfate alone or also with NaCl, hydrated through deliquescence, and then rapidly desiccated in 11% relative humidity or via vacuum. All desiccated products are partially or completely XRD amorphous; crystalline phases include starting materials and trace precipitates, leaving the bulk of the ferric sulfate in the amorphous fraction. Due to considerable spectral masking, the detectability of AFS is highly dependent on spectroscopic technique and the observed mineral assemblage. This has strong implications for remote and in-situ observations of Martian samples which include an amorphous component. AFS is only identifiable in VNIR spectra for magnesite, nontronite, and gypsum samples; hematite and basaltic glass samples appear similar to pure materials. Sulfate features dominate Raman spectra for nontronite and basaltic glass samples; the analog material dominates Raman spectra of hematite and gypsum samples. MIR spectra reveal all end members most clearly except for basaltic glass samples, where the analog material is almost completely masked. NaCl leads to similar FTIR-ATR and Raman features, regardless of analog material. Associated photographs of samples in this project can be found at: https://www.lionsandlamms.com/ This research was supported by NSF award #1819209.
description: For more information please email Elizabeth Sklute: elizabeth.sklute@gmail.com
DOI: 10.5281/zenodo.8075230
title: Comparison tables for evaluating FAIR Digital Object and Linked Data

description: RO-Crate and tables from the paper "<em>Evaluating FAIR Digital Object and Linked Data as distributed object systems</em>" https://doi.org/10.48550/arXiv.2306.07436 We systematically evaluate FDO and its implementations as a global distributed object system, by using five different conceptual frameworks that cover interoperability, middleware, FAIR principles, EOSC requirements and FDO guidelines themself. table1.html<br> Considering FDO and Web according to the quality levels of the Interoperability Framework for Fast Data (Delgado 2016) table2.html<br> Mapping the Metamodel concepts from the Interoperability Framework for Fast Data (Delgado 2016) to equivalent concepts for FDO and Web. table3.html<br> Checking FDO guidelines (Bonino et al. 2019; Anders et al. 2023) against its current implementations as DOIP (DONA 2018) and Linked Data Platform (LDP) (Bonino da Silva Santos, Guizzardi, and Sales 2022), with suggestions for required additions table4.html<br> Comparing FAIR Digital Object (with the DOIP 2.0 protocol (DONA 2018)) and Web technologies (using Linked Data) as middleware infrastructures (Zarras 2004) table5.html Assessing RDA’s FAIR Data Maturity Model (FAIR Data Maturity Model Working Group 2020; Bahim et al. 2020) (first 2 columns) against the FDO guidelines (Bonino et al. 2019), FDO implemented with the protocol DOIPv2 (DONA 2018), Linked Data Platform (LDP) (Bonino da Silva Santos, Guizzardi, and Sales 2022) and examples from Linked Data practices in general. (— indicates Unspecified, may be possible with additional conventions) A web rendering of this RO-Crate is available at https://w3id.org/ro/doi/10.5281/zenodo.8075229
description: Web rendering of this RO-Crate is available at https://w3id.org/ro/doi/10.5281/zenodo.8075229
DOI: 10.5281/zenodo.8075229
title: Comparison tables for evaluating FAIR Digital Object and Linked Data

description: RO-Crate and tables from the paper "<em>Evaluating FAIR Digital Object and Linked Data as distributed object systems</em>" https://doi.org/10.48550/arXiv.2306.07436 We systematically evaluate FDO and its implementations as a global distributed object system, by using five different conceptual frameworks that cover interoperability, middleware, FAIR principles, EOSC requirements and FDO guidelines themself. table1.html<br> Considering FDO and Web according to the quality levels of the Interoperability Framework for Fast Data (Delgado 2016) table2.html<br> Mapping the Metamodel concepts from the Interoperability Framework for Fast Data (Delgado 2016) to equivalent concepts for FDO and Web. table3.html<br> Checking FDO guidelines (Bonino et al. 2019; Anders et al. 2023) against its current implementations as DOIP (DONA 2018) and Linked Data Platform (LDP) (Bonino da Silva Santos, Guizzardi, and Sales 2022), with suggestions for required additions table4.html<br> Comparing FAIR Digital Object (with the DOIP 2.0 protocol (DONA 2018)) and Web technologies (using Linked Data) as middleware infrastructures (Zarras 2004) table5.html Assessing RDA’s FAIR Data Maturity Model (FAIR Data Maturity Model Working Group 2020; Bahim et al. 2020) (first 2 columns) against the FDO guidelines (Bonino et al. 2019), FDO implemented with the protocol DOIPv2 (DONA 2018), Linked Data Platform (LDP) (Bonino da Silva Santos, Guizzardi, and Sales 2022) and examples from Linked Data practices in general. (— indicates Unspecified, may be possible with additional conventions) A web rendering of this RO-Crate is available at https://w3id.org/ro/doi/10.5281/zenodo.8075229
description: Web rendering of this RO-Crate is available at https://w3id.org/ro/doi/10.5281/zenodo.8075229