cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5861670.v1
title: Physiological Responses to Hypoxia and Manganese in Eucalyptus Clones with Differential Tolerance to Vale do Rio Doce Shoot Dieback

description: ABSTRACT: Vale do Rio Doce shoot dieback (VRDSD) is an anomaly whose cause seems to be associated with hypoxic conditions and their consequences (excess Mn and Fe) triggered by elevation of the water table in areas with poor drainage. Different plants have distinct survival strategies under this form of stress. The objective of this study was to understand the physiological responses involved in the differential tolerance of eucalyptus clones to VRDSD and their relationship to hypoxia and excess Mn. A hydroponic experiment was carried out using a 2 × 2 × 2 factorial arrangement, two eucalyptus clones with different levels of tolerance to VRDSD (sensitive Urograndis hybrid - 1213; and the tolerant Rio Claro hybrid - Eucalyptus grandis x unknown - 2719), two concentrations of O2 (8 and 4 mg L-1), and two Mn concentrations (1.39 and 300 mg L-1) in a randomized block design (RBD) with three replicates. Forty-day-old clones were maintained in Clark nutrient solution for 30 days. After this period, the treatments were applied for 11 days. Plant gaseous exchange shoot and root production, and the quantity of enzymes related to oxidative stress in leaves and roots were evaluated. In the tolerant clone, reactive oxygen species (ROS) were produced under hypoxic conditions, accompanied by reduction in production of dry matter, malondialdehyde (MDA), and in activity of the enzyme alcohol dehydrogenase (ADH). However, this clone had greater production of superoxide dismutase (SOD) under these conditions, an enzyme responsible for detoxification of ROS, which acts as part of the Low Oxygen Quiescence Syndrome (LOQS). In contrast, sensitive clones did not exhibit expressive reductions in growth or changes in the leaf/root ratio. These clones formed large quantities of adventitious roots and had high levels of MDA and ADH and low levels of SOD. Therefore, sensitive clones appear not to be prepared for detoxification of ROS and other toxic metabolites, but rather adopt morphological escape mechanisms, the Low Oxygen Escape Syndrome (LOES), in response to hypoxia. Thus, the period of soil waterlogging may cause the death of large numbers of roots in sensitive clones, limiting their ability to absorb water and nutrients and culminating in the death of these plants. Excess Mn seems to aggravate the damage caused by hypoxia, but it is not the causal agent of VRDSD.
DOI: 10.6084/m9.figshare.5861655
title: Natural Fertility and Metals Contents in Soils of Rio Grande do Sul (Brazil)

description: ABSTRACT: The parent geological materials and formation factors influence the chemical, physical, and mineralogical properties and composition of the soil. Therefore, the aims of this study were to determine the chemical and some physical and mineralogical properties of the soil useful for agricultural practice; to determine the natural contents of the semitotal metals in soils of the state of Rio Grande do Sul (Brazil); and to suggest use of the quality reference values (QRVs) in accordance with Resolution 420/2009 of the National Commission for the Environment (Conama). To determine some soil properties useful for agricultural, 254 surface soil samples from areas without known human influence (native grasslands or forests) were analyzed according to the methodology used by the soil testing laboratories of the state of Rio Grande do Sul. In addition, the semitotal heavy metal (Cd, Co, Cr, Cu, Ni, Pb, V, and Zn) contents of the soil were determined by the Usepa 3050B method and Hg was determined through an adaptation of the Usepa 7471 method. The results were studied in five soil groups from the state of Rio Grande do Sul according to soil parent materials: (1) basalt (volcanic rocks) of the Plateau region, (2) crystalline rocks (granite, schists, etc.) of the Southern Shield, (3) pelitic rocks (siltstones, mudstones, etc.) of the Peripheral Depression, (4) sandstones (sedimentary) of the Central Plains, and (5) sediments (unconsolidated) of the Coastal Plains. The properties for agricultural use of these soils were compared using the criteria adopted by the current fertilizer recommendations for the state. Multivariate analysis was used to study metals contents. Average values of available P contents were low in all soil groups; however, average values were high in several soil groups for available K. Averages of total acidity and cation exchange capacity were higher in Group 1 soils. The average values of extractable Zn, Cu, and S were high in all soils. Averages of Fe oxides were higher in the soils formed over basalt than in the other soils. Average metal (Cd, Co, Cr, Cu, Ni, Pb, V, and Zn) contents were higher in Group 1 soils than in the other soil groups (2 to 5). For Hg, however, average values were similar for all soil groups. The Spearman correlation coefficients were positive and highest among the metals (except for Cd and Hg) and the clay, Fed, and extractable Cu soil properties. Another high positive correlation coefficient was found between semitotal Cu and Zn contents and organic carbon. The QRVs for Cd, Co, Cr, Cu, Hg, Ni, Pb, V, and Zn, determined according to Conama Resolution 420/2009, followed the same trend as the average metals contents.
DOI: 10.6084/m9.figshare.5861655.v1
title: Natural Fertility and Metals Contents in Soils of Rio Grande do Sul (Brazil)

description: ABSTRACT: The parent geological materials and formation factors influence the chemical, physical, and mineralogical properties and composition of the soil. Therefore, the aims of this study were to determine the chemical and some physical and mineralogical properties of the soil useful for agricultural practice; to determine the natural contents of the semitotal metals in soils of the state of Rio Grande do Sul (Brazil); and to suggest use of the quality reference values (QRVs) in accordance with Resolution 420/2009 of the National Commission for the Environment (Conama). To determine some soil properties useful for agricultural, 254 surface soil samples from areas without known human influence (native grasslands or forests) were analyzed according to the methodology used by the soil testing laboratories of the state of Rio Grande do Sul. In addition, the semitotal heavy metal (Cd, Co, Cr, Cu, Ni, Pb, V, and Zn) contents of the soil were determined by the Usepa 3050B method and Hg was determined through an adaptation of the Usepa 7471 method. The results were studied in five soil groups from the state of Rio Grande do Sul according to soil parent materials: (1) basalt (volcanic rocks) of the Plateau region, (2) crystalline rocks (granite, schists, etc.) of the Southern Shield, (3) pelitic rocks (siltstones, mudstones, etc.) of the Peripheral Depression, (4) sandstones (sedimentary) of the Central Plains, and (5) sediments (unconsolidated) of the Coastal Plains. The properties for agricultural use of these soils were compared using the criteria adopted by the current fertilizer recommendations for the state. Multivariate analysis was used to study metals contents. Average values of available P contents were low in all soil groups; however, average values were high in several soil groups for available K. Averages of total acidity and cation exchange capacity were higher in Group 1 soils. The average values of extractable Zn, Cu, and S were high in all soils. Averages of Fe oxides were higher in the soils formed over basalt than in the other soils. Average metal (Cd, Co, Cr, Cu, Ni, Pb, V, and Zn) contents were higher in Group 1 soils than in the other soil groups (2 to 5). For Hg, however, average values were similar for all soil groups. The Spearman correlation coefficients were positive and highest among the metals (except for Cd and Hg) and the clay, Fed, and extractable Cu soil properties. Another high positive correlation coefficient was found between semitotal Cu and Zn contents and organic carbon. The QRVs for Cd, Co, Cr, Cu, Hg, Ni, Pb, V, and Zn, determined according to Conama Resolution 420/2009, followed the same trend as the average metals contents.
DOI: 10.6084/m9.figshare.5861649
title: Effects of mineral trioxide aggregate, BiodentineTM and calcium hydroxide on viability, proliferation, migration and differentiation of stem cells from human exfoliated deciduous teeth

description: Abstract Objective: The aim of the study was to evaluate the effects of the capping materials mineral trioxide aggregate (MTA), calcium hydroxide (CH) and BiodentineTM (BD) on stem cells from human exfoliated deciduous teeth (SHED) in vitro. Material and Methods: SHED were cultured for 1 – 7 days in medium conditioned by incubation with MTA, BD or CH (1 mg/mL), and tested for viability (MTT assay) and proliferation (SRB assay). Also, the migration of serum-starved SHED towards conditioned media was assayed in companion plates, with 8 μm-pore-sized membranes, for 24 h. Gene expression of dentin matrix protein-1 (DMP-1) was evaluated by reverse-transcription polymerase chain reaction. Regular culture medium with 10% FBS (without conditioning) and culture medium supplemented with 20% FBS were used as controls. Results: MTA, CH and BD conditioned media maintained cell viability and allowed continuous SHED proliferation, with CH conditioned medium causing the highest positive effect on proliferation at the end of the treatment period (compared with BD and MTA) (p&lt;0.05). In contrast, we observed increased SHED migration towards BD and MTA conditioned media (compared with CH) (p&lt;0.05). A greater amount of DMP-1 gene was expressed in MTA group compared with the other groups from day 7 up to day 21. Conclusion: Our results show that the three capping materials are biocompatible, maintain viability and stimulate proliferation, migration and differentiation in a key dental stem cell population.
DOI: 10.6084/m9.figshare.5861649.v1
title: Effects of mineral trioxide aggregate, BiodentineTM and calcium hydroxide on viability, proliferation, migration and differentiation of stem cells from human exfoliated deciduous teeth

description: Abstract Objective: The aim of the study was to evaluate the effects of the capping materials mineral trioxide aggregate (MTA), calcium hydroxide (CH) and BiodentineTM (BD) on stem cells from human exfoliated deciduous teeth (SHED) in vitro. Material and Methods: SHED were cultured for 1 – 7 days in medium conditioned by incubation with MTA, BD or CH (1 mg/mL), and tested for viability (MTT assay) and proliferation (SRB assay). Also, the migration of serum-starved SHED towards conditioned media was assayed in companion plates, with 8 μm-pore-sized membranes, for 24 h. Gene expression of dentin matrix protein-1 (DMP-1) was evaluated by reverse-transcription polymerase chain reaction. Regular culture medium with 10% FBS (without conditioning) and culture medium supplemented with 20% FBS were used as controls. Results: MTA, CH and BD conditioned media maintained cell viability and allowed continuous SHED proliferation, with CH conditioned medium causing the highest positive effect on proliferation at the end of the treatment period (compared with BD and MTA) (p&lt;0.05). In contrast, we observed increased SHED migration towards BD and MTA conditioned media (compared with CH) (p&lt;0.05). A greater amount of DMP-1 gene was expressed in MTA group compared with the other groups from day 7 up to day 21. Conclusion: Our results show that the three capping materials are biocompatible, maintain viability and stimulate proliferation, migration and differentiation in a key dental stem cell population.
DOI: 10.6084/m9.figshare.5861646
title: Ethanol on the postharvest control of anthracnose in ‘Kumagai’ guava

description: ABSTRACT The aim of this study was to evaluate the effects of ethanol on the control of Colletotrichum spp. in ‘Kumagai’ guava and on the fruit physical-chemical attributes. For this purpose, three assays were carried out. For the first assay, fruit were exposed to ethanol vapor (0, 1, 2, 4, and 8 mL∙kg-1), applied in hermetic containers. On the second, ethanol was applied by immersion for 2 minutes in different concentrations (20, 30, 40, and 50%). On the last assay, fruit were immersed in 30, 40, and 50% ethanol for 2, 5, and 10 minutes. Fruit that were not exposed to volatile (first assay) or water treated (second and third assay) were used as control. In all assays, guavas were first inoculated with a conidial suspension of Colletotrichum spp. and after 2 hours, fruit were subject to ethanol. Fruit were stored at 25 °C / 80% RH for 8 days and assessed for incidence, rot severity and physical-chemical properties. Conidial germination and mycelial growth of Colletotrichum spp. were evaluated on in vitro assays. It was observed that 40 and 50% of ethanol, applied by fruit immersion for 2 min, reduced incidence and anthracnose severity with no changes in the guava physical-chemical attributes, when fruit were stored at 25 °C. Applied as a vapor, ethanol reduced only the incidence, but did not reduce anthracnose severity in guavas stored at 25 °C. Under cold storage, fruit treated with 40% ethanol exhibited a reduction of 19% in anthracnose severity. In vitro, ethanol vapor at 70 and 140 µL∙L-1 inhibited Colletotrichum spp. mycelial growth rate and when incorporated in potato-dextrose-agar, ethanol (30, 40 and 50%) inhibited Colletotrichum spp. mycelial growth rate and conidial germination.
DOI: 10.6084/m9.figshare.5861646.v1
title: Ethanol on the postharvest control of anthracnose in ‘Kumagai’ guava

description: ABSTRACT The aim of this study was to evaluate the effects of ethanol on the control of Colletotrichum spp. in ‘Kumagai’ guava and on the fruit physical-chemical attributes. For this purpose, three assays were carried out. For the first assay, fruit were exposed to ethanol vapor (0, 1, 2, 4, and 8 mL∙kg-1), applied in hermetic containers. On the second, ethanol was applied by immersion for 2 minutes in different concentrations (20, 30, 40, and 50%). On the last assay, fruit were immersed in 30, 40, and 50% ethanol for 2, 5, and 10 minutes. Fruit that were not exposed to volatile (first assay) or water treated (second and third assay) were used as control. In all assays, guavas were first inoculated with a conidial suspension of Colletotrichum spp. and after 2 hours, fruit were subject to ethanol. Fruit were stored at 25 °C / 80% RH for 8 days and assessed for incidence, rot severity and physical-chemical properties. Conidial germination and mycelial growth of Colletotrichum spp. were evaluated on in vitro assays. It was observed that 40 and 50% of ethanol, applied by fruit immersion for 2 min, reduced incidence and anthracnose severity with no changes in the guava physical-chemical attributes, when fruit were stored at 25 °C. Applied as a vapor, ethanol reduced only the incidence, but did not reduce anthracnose severity in guavas stored at 25 °C. Under cold storage, fruit treated with 40% ethanol exhibited a reduction of 19% in anthracnose severity. In vitro, ethanol vapor at 70 and 140 µL∙L-1 inhibited Colletotrichum spp. mycelial growth rate and when incorporated in potato-dextrose-agar, ethanol (30, 40 and 50%) inhibited Colletotrichum spp. mycelial growth rate and conidial germination.
DOI: 10.6084/m9.figshare.5861613
title: Benznidazole affects expression of Th1, Th17 and Treg cytokines during acute experimental Trypanosoma cruzi infection

description: Abstract Background The present study evaluated the effect of treatment with benznidazole on mRNA expression of IFN-γ, IL-17, IL-10, TGF-β and FoxP3 in spleen and heart tissue of BALB/c mice in the acute phase of an experimental infection with Trypanosoma cruzi, strains JLP or Y. Methods The mRNA expression of cytokines and parasite load were assessed by q-PCR. Dependent groups were compared using Student's paired t-test and independent groups were compared using Student's unpaired t-test. Results Infection with the JLP or Y strains increased expression of IFN-γ in the heart and of IL-10 and IL-17 in the spleen and heart compared to uninfected animals. Treatment increased the expression of IFN-γ and decreased the expression of IL-17, IL-10, TGF- β and Foxp3 in spleen and heart tissue compared to untreated infected animals. Conclusion Benznidazole can induce Th1 profile in the initial of the acute phase. The treatment decreased the parasite load in both organs, although the number of parasites in Y-strain-infected mice remained high. The data suggest that benznidazole may modulate cytokine expression in infection and can be dependent of the strain. However, treatment was not fully effective in the infection provoked by Y strain, probably due to the characteristics of the strain itself.
DOI: 10.6084/m9.figshare.5861613.v1
title: Benznidazole affects expression of Th1, Th17 and Treg cytokines during acute experimental Trypanosoma cruzi infection

description: Abstract Background The present study evaluated the effect of treatment with benznidazole on mRNA expression of IFN-γ, IL-17, IL-10, TGF-β and FoxP3 in spleen and heart tissue of BALB/c mice in the acute phase of an experimental infection with Trypanosoma cruzi, strains JLP or Y. Methods The mRNA expression of cytokines and parasite load were assessed by q-PCR. Dependent groups were compared using Student's paired t-test and independent groups were compared using Student's unpaired t-test. Results Infection with the JLP or Y strains increased expression of IFN-γ in the heart and of IL-10 and IL-17 in the spleen and heart compared to uninfected animals. Treatment increased the expression of IFN-γ and decreased the expression of IL-17, IL-10, TGF- β and Foxp3 in spleen and heart tissue compared to untreated infected animals. Conclusion Benznidazole can induce Th1 profile in the initial of the acute phase. The treatment decreased the parasite load in both organs, although the number of parasites in Y-strain-infected mice remained high. The data suggest that benznidazole may modulate cytokine expression in infection and can be dependent of the strain. However, treatment was not fully effective in the infection provoked by Y strain, probably due to the characteristics of the strain itself.
DOI: 10.6084/m9.figshare.5861598
title: Crop residue harvest for bioenergy production and its implications on soil functioning and plant growth: A review

description: ABSTRACT: The use of crop residues as a bioenergy feedstock is considered a potential strategy to mitigate greenhouse gas (GHG) emissions. However, indiscriminate harvesting of crop residues can induce deleterious effects on soil functioning, plant growth and other ecosystem services. Here, we have summarized the information available in the literature to identify and discuss the main trade-offs and synergisms involved in crop residue management for bioenergy production. The data consistently showed that crop residue harvest and the consequent lower input of organic matter into the soil led to C storage depletions over time, reducing cycling, supply and availability of soil nutrients, directly affecting the soil biota. Although the biota regulates key functions in the soil, crop residue can also cause proliferation of some important agricultural pests. In addition, crop residues act as physical barriers that protect the soil against raindrop impact and temperature variations. Therefore, intensive crop residue harvest can cause soil structure degradation, leading to soil compaction and increased risks of erosion. With regard to GHG emissions, there is no consensus about the potential impact of management of crop residue harvest. In general, residue harvest decreases CO2 and N2O emissions from the decomposition process, but it has no significant effect on CH4 emissions. Plant growth responses to soil and microclimate changes due to crop residue harvest are site and crop specific. Adoption of the best management practices can mitigate the adverse impacts of crop residue harvest. Longterm experiments within strategic production regions are essential to understand and monitor the impact of integrated agricultural systems and propose customized solutions for sustainable crop residue management in each region or landscape. Furthermore, private and public investments/cooperations are necessary for a better understanding of the potential environmental, economic and social implications of crop residue use for bioenergy production.
DOI: 10.6084/m9.figshare.5861598.v1
title: Crop residue harvest for bioenergy production and its implications on soil functioning and plant growth: A review

description: ABSTRACT: The use of crop residues as a bioenergy feedstock is considered a potential strategy to mitigate greenhouse gas (GHG) emissions. However, indiscriminate harvesting of crop residues can induce deleterious effects on soil functioning, plant growth and other ecosystem services. Here, we have summarized the information available in the literature to identify and discuss the main trade-offs and synergisms involved in crop residue management for bioenergy production. The data consistently showed that crop residue harvest and the consequent lower input of organic matter into the soil led to C storage depletions over time, reducing cycling, supply and availability of soil nutrients, directly affecting the soil biota. Although the biota regulates key functions in the soil, crop residue can also cause proliferation of some important agricultural pests. In addition, crop residues act as physical barriers that protect the soil against raindrop impact and temperature variations. Therefore, intensive crop residue harvest can cause soil structure degradation, leading to soil compaction and increased risks of erosion. With regard to GHG emissions, there is no consensus about the potential impact of management of crop residue harvest. In general, residue harvest decreases CO2 and N2O emissions from the decomposition process, but it has no significant effect on CH4 emissions. Plant growth responses to soil and microclimate changes due to crop residue harvest are site and crop specific. Adoption of the best management practices can mitigate the adverse impacts of crop residue harvest. Longterm experiments within strategic production regions are essential to understand and monitor the impact of integrated agricultural systems and propose customized solutions for sustainable crop residue management in each region or landscape. Furthermore, private and public investments/cooperations are necessary for a better understanding of the potential environmental, economic and social implications of crop residue use for bioenergy production.