cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15485/1866606
title: Data from: “Enabling FAIR data in Earth and environmental science with community-centric (meta)data reporting formats”

description: This dataset contains supplementary information for a manuscript describing the ESS-DIVE (Environmental Systems Science Data Infrastructure for a Virtual Ecosystem) data repository's community data and metadata reporting formats. The purpose of creating the ESS-DIVE reporting formats was to provide guidelines for formatting some of the diverse data types that can be found in the ESS-DIVE repository. The 6 teams of community partners who developed the reporting formats included scientists and engineers from across the Department of Energy National Lab network. Additionally, during the development process, 247 individuals representing 128 institutions provided input on the formats.The primary files in this dataset are 10 data and metadata crosswalk for ESS-DIVE’s reporting formats (all files ending in _crosswalk.csv). The crosswalks compare elements used in each of the reporting formats to other related standards and data resources (e.g., repositories, datasets, data systems). This dataset also contains additional files recommended by ESS-DIVE’s file-level metadata reporting format. Each data file has an associated dictionary (files ending in _dd.csv) which provide a brief description of each standard or data resource consulted in the data reporting format development process. The flmd.csv file describes each file contained within the dataset.
DOI: 10.15485/1871341
title: The dataset of in-situ measurements of chemically and radiatively important atmospheric gases from the AGAGE and affiliated stations (2022R1)

description: In the ALE/GAGE/AGAGE global network program, continuous high frequency gas chromatographic measurements of four biogenic/anthropogenic gases (methane, CH4; nitrous oxide, N2O; hydrogen, H2; and carbon monoxide, CO) and several anthropogenic gases that contribute to stratospheric ozone destruction and/or to the greenhouse effect have been carried out at five globally distributed sites for several years. The program, which began in 1978, is divided into three parts associated with three changes in instrumentation: the Atmospheric Lifetime Experiment (ALE), which used Hewlett Packard HP5840 gas chromatographs; the Global Atmospheric Gases Experiment (GAGE), which used HP5880 gas chromatographs; and the present Advanced GAGE (AGAGE). AGAGE uses two types of instruments: a gas chromatograph with multiple detectors (GC-MD), and a gas chromatograph with mass spectrometric analysis (GC-MS). Beginning in January 2004, an improved cryogenic preconcentration system (Medusa) replaced the absorption-desorption module in the GC-MS systems at Mace Head and Cape Grim; this provided improved capability to measure a broader range of volatile perfluorocarbons with high global warming potentials. The Medusa GC-MS systems were subsequently used at other AGAGE stations (Trinidad Head, Barbados, American Samoa, Zeppelin, Jungfraujoch, and Goan) after the initial setup at Mace Head and Cape Grim. More information may be found at the AGAGE home page: https://agage.mit.edu/instruments.Data from the AGAGE and affiliated stations (total of 9 sites) between August 1993 and March 2021 are provided in “Agage_gcmd_gcms_data_2022_05_26_tar.gz” (compressed tar file). The metadata file has information on each station and currently released species. The standard scales used in archived species are listed in "AGAGE_scale_2022_v1.pdf". Additional information can be found on the AGAGE website (https://agage.mit.edu).
DOI: 10.5519/qd.lf98nkpr
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (10 records)
DOI: 10.15485/1873618
title: Raw seedling and sapling census data collected from June 2015 - April 2019 within a tropical wet forest in Puerto Rico

description: This data package contains data used to evaluate the effects of experimental warming (4˚C above ambient), drought, and hurricane disturbance on species richness, diversity, and composition of understory plant communities across ontogeny at the Tropical Responses to Altered Climate Experiment (TRACE) in Luquillo, Puerto Rico. The raw data in this package include a file for the species composition matrix of woody seedlings (&gt;10 cm and &lt;20 cm height; TRACE_composition_seedling.csv) and saplings (&gt;20 cm height; TRACE_composition_sapling.csv) within the six TRACE plots, collected during six census dates from June 2015 to April 2019. Also included is also a file with the species names associated with the species codes found in the composition files (TRACE_species_codes.csv), and a data dictionary file describing the columns in the composition files (data_dictionary_composition_files.csv). All data files are in csv format, with the exception of the metadata which is in xml format.
DOI: 10.15485/1876201
title: Oceanographic Conditions. 2007 - 2040. North Slope Alaska.

description: Complete representations of oceanographic conditions require spatial and temporal information about the significant wave height (Hs), peak wave period (Tp), wind speed, wind direction, wave direction, water level, salinity, and temperature. This data develops location-independent typologies to reduce the number of boundary conditions needed to assess nearshore oceanographic environments in both a Historical (2007-2019) and Future (2020-2040) timespan along the Alaskan North Slope. Wave information for both time spans were generated from WaveWatch III, Delft3D-FLOW, and Delft3D-WAVE simulations forced by wind conditions from reanalysis data (e.g., ASRv2 and ERA5) for the historical simulations while projected conditions were obtained from downscaled GFDL-CM3 forced under RCP8.5 conditions. Salinity was generated from GOFS 3.1 for the years between 2008-2015 and skin temperature of the ocean was obtained from ASRv2 reanalysis data for the years between 2007-2016. To identify generalized oceanographic typologies, K-means clustering was applied to the energy-weighted joint-probability distribution of Hs and Tp at six sites along the North Slope of Alaska. Distributions of wave and wind direction, wind speed, and water level associated with locaiton-indepndent centroids were assigned single values to describe a reduced order, typological rendition of offshore oceanographic conditions. These final typologies and their constituent data are provided here and can be used to evaluate the change in ocean energy over the next two decades in response to climate change and provide insight into expected consequences such as coastal erosion and flooding. A full assessment of the findings and techniques developed can be found in: Eymold, W.K., Flanary, C., Erikson, L., Nederhoff, K., Chartrand, C.C., Jones, C., Kasper, J., and Bull, D.L. Typological Representation of the Offshore Oceanographic Environment along the Alaskan North Slope. Continental Shelf Research (2022). 10.1016/j.csr.2022.104795
DOI: 10.15485/1880687
title: Community Based Data of Uranium Adsorption onto Quartz

description: This data upload includes a compilation of experiments for quantifying uranium adsorption onto quartz. The provided .csv file has been compiled from the literature in a findable, accessible, interoperable, reusable (FAIR) data format. This was accomplished using the Lawrence Livermore National Laboratory Surface Complexation Database Converter (SCDC) code written in the R programming language (free licensing available at https://ipo.llnl.gov/technologies/software/llnl-surface-complexation-database-converter-scdc). This constitutes all current data compiled on uranium-quartz interactions in the L-SCIE (LLNL Surface Complexation/Ion Exchange) database (as of 02/28/2022). This data was used to develop surface complexation models that fit the global community dataset (https://doi.org/10.1021/acs.est.1c07109). The FAIR-formatted dataset also enables the implementation of alternative machine-learning approaches that can be explored in the future.
DOI: 10.15485/1892050
title: Soil and soil fraction radiocarbon, C and N from the Enriched Background Isotope Study, Oak Ridge National Laboratory, Tennessee, USA

description: A large accidental 14CO2 release at the Oak Ridge Reservation in Tennessee, USA provided a strong label pulse into adjacent, well-studied oak forests, resulting in highly elevated Δ14C values in leaf litter (~1000‰) and roots (~260–450‰). A four-year manipulative study was conducted to provide insight into mechanisms underlying soil Organic matter dynamics, specifically to determine the relative contribution of litter versus roots to the bulk mineral soil C pool, as well as to free light, occluded light and heavy fractions. The heavy fraction was further split into fractions with densities of 1.7–2.4 g cm-3 and &gt;2.4 g cm-3 to test the homogeneity of the mineral-associated fraction of C. Substantial concentrations of label were detected in all soil fractions within a year of the 14CO2 release, indicating rapid incorporation of newly fixed photosynthates in all fractions of soil organic C, regardless of differences in stability inferred by previous work. This rapid incorporation of label occurred only in treatments where roots were labeled, indicating that roots are the major source of inputs to mineral soil C stocks at these sites. Separation of the heavy fraction into subfractions of intermediate (1.7–2.4 g cm -3) and high (&gt;2.4 g cm-3) density indicated that both subfractions incorporated label at similar rates, despite significant differencesin degree of microbial processing.
DOI: 10.15485/1909711
title: The dataset of in-situ measurements of chemically and radiatively important atmospheric gases from the AGAGE and affiliated stations (2022R2)

description: In the ALE/GAGE/AGAGE global network program, continuous high frequency gas chromatographic measurements of four biogenic/anthropogenic gases (methane, CH4; nitrous oxide, N2O; hydrogen, H2; and carbon monoxide, CO) and several anthropogenic gases that contribute to stratospheric ozone destruction and/or to the greenhouse effect have been carried out at five globally distributed sites for several years. The program, which began in 1978, is divided into three parts associated with three changes in instrumentation: the Atmospheric Lifetime Experiment (ALE), which used Hewlett Packard HP5840 gas chromatographs; the Global Atmospheric Gases Experiment (GAGE), which used HP5880 gas chromatographs; and the present Advanced GAGE (AGAGE). AGAGE uses two types of instruments: a gas chromatograph with multiple detectors (GC-MD), and a gas chromatograph with mass spectrometric analysis (GC-MS). Beginning in January 2004, an improved cryogenic preconcentration system (Medusa) replaced the absorption-desorption module in the GC-MS systems at Mace Head and Cape Grim; this provided improved capability to measure a broader range of volatile perfluorocarbons with high global warming potentials. The Medusa GC-MS systems were subsequently used at other AGAGE stations (Trinidad Head, Barbados, American Samoa, Zeppelin, Jungfraujoch, and Goan) after the initial setup at Mace Head and Cape Grim. More information may be found on the AGAGE home page: https://agage.mit.edu/instruments.Data from the AGAGE and affiliated stations (total of 9 sites) between August 1993 and December 2021 are provided in “Agage_gcmd_gcms_data_2022_11_15.tar.gz” (compressed tar file). The metadata file has information on each station and currently released species. The standard scales used in archived species are listed in "AGAGE_scale_2022_v2.pdf". Additional information such as the mission and scientific objectives of the ALE/GAGE/AGAGE program can be found on the AGAGE website (https://agage.mit.edu/about/our-mission).
DOI: 10.15485/1915660
title: Coastal typologies and surface and subsurface characteristics of the Alaskan Beaufort Sea Coast

description: This dataset was generated to classify the Alaskan Beaufort Sea Coast (ABSC) into a set of distinct coastal typologies, to understand the surface and subsurface characteristics and variability of the ABSC, and to quantify relationships between these characteristics and historical rates of shoreline change. This geospatial dataset contains two csv files of points along the ABSC at a 50 m spacing, one for points sheltered by a barrier island and one for points exposed to the open ocean. Each point has a lat/lon location, and we have attributed to each point average values for elevation, historical long-term shoreline change rates, shoreline orientation, landcover, mean annual ground temperature, geomorphic unit, lithology, geology, ecological landscape unit, maximum thaw settlement potential, massive ice content, and segregated ice content. Each point is also assigned to one of 16 coastal typologies, determined by a hierarchical clustering algorithm on the elevation, shoreline change, orientation, and ground temperature data. There are 9 sheltered typologies and 7 exposed typologies, identified by an integer label in the last column of each csv file. The other two csv files contain the integer IDs and classes for the landcover and geomorphology datasets.
DOI: 10.15485/1916476
title: Hourly temperature and surface water level at the Ikpikpuk delta from 5/2012 to 11/2012

description: This data package includes the soil temperature and surface water level observations in 2012 at the Ikpikpuk River delta in northern Alaska. The data file consists of the observation table with both the .xlsx and .csv file formats. The files can be accessed through several software tools, like Microsoft Excel, and text editors. This is raw data from the near-surface ground temperature sensors at 15 cm (active layer) and 100 cm (permafrost) soil depth and a surface water sensor at the Ikpikpuk delta site in Alaska, US. The Ikpikpuk River delta is located on the Arctic Coastal Plain of northern Alaska. The Ikpikpuk River drains a land area of 15,330 km2, emptying into Smith Bay, and the delta is fan-shaped with an aerial extent of 106 km2 (Fuchs et al., 2018). This dataset supports the publication entitled "The thermal response of permafrost to coastal floodplain flooding" submitted to Environmental Research Letters (under review), where the observed water level is used as the upper boundary condition for the model simulations and the observed subsurface temperature is compared with the model simulations to answer the question about how coastal flooding affects permafrost thaw.
DOI: 10.15485/1959349
title: Throughfall-Reduction Drying Effects on Soil Respiration, Moisture, and Temperature in Four Distinct Lowland Panamanian Forests from 2015-2022

description: Objectives: Climatic drying is predicted for many tropical forests, yet effects on soil properties across moisture and soil gradients within tropical forests remain poorly characterized, hampering predictions of forest-climate feedbacks. We hypothesized that throughfall reduction (i.e. chronic drying) would suppress soil CO2 fluxes (i.e., respiration) in already-drier tropical forests by further reductions in soil moisture, but increases CO2 fluxes in wetter tropical forests by alleviating anaerobiosis and soil saturation. We conducted a field study in four distinct lowland Panamanian forests that vary in background rainfall and soil fertility. In each forest we constructed throughfall reduction structures that reduce moisture inputs to plots by ~50% (see methods). In drying and paired control plots we measured soil CO2 fluxes, soil moisture (volume/volume), soil temperature (°C), air temperature (°C), and forest floor biomass during wet-dry cycles (2015 – 2022). We also collected litterfall biomass and surveyed all tree species for diameter at breast height (dbh), and identified tree species in 2018 and 2019.Results:We found that soil moisture peaked in the wet season and declined in the dry season. Measured soil CO2 fluxes declined in the dry season and peaked in the early wet season ahead of peak soil moisture, resulting in a lower soil moisture optimum for respiration than previously modeled. Chronic throughfall exclusion also suppressed soil moisture across the four forests, and also initially suppressed soil CO2 fluxes across forests. There was sustained suppression of soil CO2 fluxes after four years in the wettest forest only (-28 ± 4% during the dry season), but elevated soil CO2 fluxes in a fertile forest after four years (+75 ± 28% during the late wet season). The unexpected negative drying effect in the wettest, most infertile forest could have resulted from reduced vertical flushing of nutrients into soils, as the drying effect increased with time. Including hydro-nutrient interactions in ecosystem models could improve predictions of tropical forest-climate feedbacks. Datasets included: Datasets included here include .csv and .xls files for soil respiration (carbon dioxide flux) collected using the LiCor (see methods), air temperature °C , soil moisture (vl/vl), and soil temperature °C. Soil moisture and soil temperature were collected at 0-10cm depths using hand-held probes (see methods). Data are on ~3 week timescales from 2015-2022 with some gaps. There is also a .kml file that includes coordinates for all 32 plots included in the study of four forests (n = 4 throughfall reduction and n = 4 control plots per site). No special software is needed to open these files.
DOI: 10.21947/1959689
title: Site A2 PNNL Surface Met Station / Reviewed Data

description: This dataset contains low-speed weather information and high-speed sonic anemometer data at the AWAKEN Site A2.
DOI: 10.15485/1960043
title: Tropical Tree Species Identity and Diameter at Breast Height in a Throughfall-Reduction Drying Experiment in Four Lowland Panamanian Forests

description: Objectives: Climatic drying is predicted for many tropical forests, yet effects on soil properties across moisture and soil gradients within tropical forests remain poorly characterized, hampering predictions of forest-climate feedbacks. We hypothesized that drying would suppress soil CO2 fluxes (i.e., respiration) in already-drier tropical forests by further reductions in soil moisture, but increases CO2 fluxes in wetter tropical forests by alleviating anaerobiosis and soil saturation. We measured soil CO2 fluxes, soil moisture, soil temperature, and forest floor biomass during wet-dry cycles (2015 – 2022) in four Panamanian forests that vary in rainfall and soil fertility. We also surveyed all tree species and identified to species in 2018 and 2019.Results: We found that soil moisture peaked in the wet season and declined in the dry season. Measured soil CO2 fluxes declined in the dry season and peaked in the early wet season ahead of peak soil moisture, resulting in a lower soil moisture optimum for respiration than previously modeled. Chronic throughfall exclusion also suppressed soil moisture across the four forests to 20cm depths, and also initially suppressed soil CO2 fluxes across forests. There was sustained suppression of soil CO2 fluxes after four years in the wettest forest only (-28 ± 4% during the dry season), but elevated soil CO2 fluxes in a fertile forest after four years (+75 ± 28% during the late wet season). The unexpected negative drying effect in the wettest, most infertile forest could have resulted from reduced vertical flushing of nutrients into soils, as the drying effect increased with time. Including hydro-nutrient interactions in ecosystem models could improve predictions of tropical forest-climate feedbacks (results presented in Cusack et al. 2023). Datasets included: Datasets included here include .csv and .xls files for tree species identity and diameter at breast height (dbh) in the study plots. There is also a .kml file that includes coordinates for all 32 plots included in the study of four forests (n = 4 throughfall reduction and n = 4 control plots per site). No special software is needed to open these files.
DOI: 10.15485/1960044
title: Throughfall-Reduction Drying Effects on Forest Floor Plant Tissue Biomass (Oi+Oe soil horizons) and Moisture Content in Four Lowland Panamanian Forests

description: Objectives: Climatic drying is predicted for many tropical forests, yet effects on soil properties across moisture and soil gradients within tropical forests remain poorly characterized, hampering predictions of forest-climate feedbacks. We hypothesized that drying would suppress soil CO2 fluxes (i.e., respiration) in already-drier tropical forests by further reductions in soil moisture, but increases CO2 fluxes in wetter tropical forests by alleviating anaerobiosis and soil saturation. We measured soil CO2 fluxes, soil moisture, soil temperature, and forest floor biomass during wet-dry cycles (2015 – 2022) in four Panamanian forests that vary in rainfall and soil fertility. We also surveyed all tree species and identified to species in 2018 and 2019.Results: We found that soil moisture peaked in the wet season and declined in the dry season. Measured soil CO2 fluxes declined in the dry season and peaked in the early wet season ahead of peak soil moisture, resulting in a lower soil moisture optimum for respiration than previously modeled. Forest floor biomass peaked in the dry season, in contrast. Chronic throughfall exclusion also suppressed soil moisture across the four forests to 20cm depths, and also initially suppressed soil CO2 fluxes across forests. There was sustained suppression of soil CO2 fluxes after four years in the wettest forest only (-28 ± 4% during the dry season), but elevated soil CO2 fluxes in a fertile forest after four years (+75 ± 28% during the late wet season). The unexpected negative drying effect in the wettest, most infertile forest could have resulted from reduced vertical flushing of nutrients into soils, as the drying effect increased with time. Including hydro-nutrient interactions in ecosystem models could improve predictions of tropical forest-climate feedbacks (results presented in Cusack et al. 2023). Datasets included: Datasets included here include .csv and .xls files for forest floor biomass (equivalent to the Oi+Oe soil horizons), and a subset include forest floor biomass moisture content (weight/weight) in the study plots. There is also a .kml file that includes coordinates for all 32 plots included in the study of four forests (n = 4 throughfall reduction and n = 4 control plots per site). No special software is needed to open these files.