cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10739679
title: Models and Datasets for "Extracting Paleoweather from Paleoclimate through a Deep Learning Reconstruction of Last Millennium Atmospheric Blocking"

description: Associated publication: Karamperidou, C., 2024: Extracting paleoweather from paleoclimate through a deep learning reconstruction of Last Millennium atmospheric blocking, Nature Communications Earth & Environment. DOI : 10.1038/s43247-024-01687-y.

 

This repository contains:



the architecture and weights of PaleoBlockNet v1.0

the following ensemble DL reconstructions of JJA frequency of blocked days inferred by PaleoBlockNet:



the 10-member NTREND-based DL reconstruction; uses as input the NTREND DA N.Hemisphere MJJA surface temperature anomaly by King et al. (2021)

the 100-member PHYDA-based DL reconstruction; uses as input the PHYDA JJA surface temperature anomaly by Steiger et al. (2018)

the 12-member LME-based DL reconstruction; uses as input the CESM-LME surface temperature anomaly; this is a sensitivity experiment (see publication for details).



Integrated Gradients that assign importance to the input features for PaleoblockNet's blocking inferences 


 

If you use this dataset, please cite the associated publication and the present repository.

To interactively explore the datasets, a web interface has been developed and can be accessed at https://www2.hawaii.edu/~ckaramp/paleoblocknet

Contact the author Christina Karamperidou (https://www2.hawaii.edu/~ckaramp) for more information about the details of these datasets.
description: Projected changes in atmospheric blocking and associated extreme weather are marked by considerable uncertainties. While paleoclimate records could help reduce these uncertainties, their low temporal resolution makes extracting synoptic-scale signals challenging. Here, a deep learning model is developed to infer summertime blocking frequency from tree-ring-based gridded reconstructions of Northern Hemisphere surface temperature over the Last Millennium. The model, despite not directly incorporating paleoclimate proxies or their locations, is implicitly constrained by them. The reconstructions highlight the tropical Pacific's strong influence on blocking variability at interannual-to-centennial time scales. A weakened tropical Pacific zonal temperature gradient during the Little Ice Age correlates with a hemispherically reduced -yet more variable interannually- blocking frequency and altered regional patterns. This deep learning approach offers a pathway for extracting paleoweather signals from paleoclimate records that enables improved understanding of blocking response to external forcing and constraining of model projections of blocking under climate change scenarios.
DOI: 10.5281/zenodo.12746696
title: ICP-MS
DOI: 10.5281/zenodo.13338118
title: Data for replication of figures in "In situ imaging of a kleptoplastidic ciliate thin layer indicates traditional sampling underestimates oceanic mixotroph biomass", Barua et al. Communications Earth & Environment (2024).

description: This dataset contains the relevant information needed to reproduce data plots in Figures 1-5 and Supplementary Figures 2-3 of the following manuscript.

In situ imaging of a kleptoplastidic ciliate thin layer indicates traditional sampling underestimates oceanic mixotroph biomass

Ranjoy Barua, Lisa Nyman, Buyu Guo, Matthew D. Johnson, Anvita U. Kerkar, Jiarong Hong, Adam T. Greer, John Lehrter, Malcolm McFarland, Bradley Penta, Aditya R. Nayak

Communications Earth & Environment (2024).
DOI: 10.5281/zenodo.8231412
title: BUS-BRA: A Breast Ultrasound Dataset for Assessing Computer-aided Diagnosis Systems

description: The BUS-BRA Dataset is a publicly available dataset of anonymized breast ultrasound (BUS) images of 1,064 patients that underwent routinary breast studies. The BUS dataset contains biopsy-proven tumor cases and BI-RADS annotations in categories 2, 3, 4, and 5. In addition, the dataset also contains ground truth delineations that divide the BUS images into tumoral and normal regions. A full description of the BUS-BRA dataset can be found in the following article:

Wilfrido Gómez-Flores, Maria Julia Gregorio-Calas, and Wagner Coelho de Albuquerque Pereira, "BUS-BRA: A Breast Ultrasound Dataset for Assessing Computer-aided Diagnosis Systems," Medical Physics, vol. 51, pp. 3110-3123, 2024, DOI: 10.1002/mp.16812.

Any research originating from its usage is required to cite this paper.

The Program of Biomedical Engineering of the Federal University of Rio de Janeiro (PEB/COPPE-UFRJ, Brazil) has a copyright on the data and is the principal distributor of the BUS-BRA Dataset. In addition, the Centro de Investigación y de Estudios Avanzados (Cinvestav, Mexico) is involved in an ongoing effort to develop this dataset to aid research efforts in developing, testing, and evaluating algorithms for breast ultrasound analysis.
description: The source codes to replicate these experiments in the article are found at https://github.com/wgomezf/BUS-BRA
DOI: 10.6084/m9.figshare.25451449
title: Supplementary Material for: Association between sense of coherence and caries activity and caries experience among male adolescents from southern Brazil: a cross-sectional study

description: Introduction: This cross-sectional study assessed the association between sense of coherence (SoC) and caries activity (number of active caries lesions) and caries experience (DMFT index) among 18-19-year-old male adolescents who joined the Brazilian Army as draftees for mandatory military service (n=507). Methods: Data collection included a questionnaire (level of education, family income, and tooth brushing frequency), the Brazilian short version of the SoC scale (SOC-13), and clinical caries examination (non-cavitated/cavitated, inactive/active). The main predictor variable was SoC, categorized as low, moderate, or high. Poisson regression models were used for statistical analysis. Results: A high SoC was significantly associated with a lower number of active lesions (adjusted rate ratio = 0.85; 95% confidence interval = 0.74-0.98). No association between SoC and DMFT was detected. Conclusion: A high SoC was found to be a protective factor to caries activity in this population.
DOI: 10.6084/m9.figshare.25962826.v1
title: Appendix for Explicit or Implicit Digital Humanities? An Examination of Search Strategies to Retrieve Digital Humanities Publications from Large-Scale Scholarly Databases

description: This folder contains the appendix for our paper "Explicit or Implicit Digital Humanities? An Examination of Search Strategies to Retrieve Digital Humanities Publications from Large-Scale Scholarly Databases" to be published in Quantitative Science Studies.
DOI: 10.6084/m9.figshare.26125483
title: Soft robotic shorts improve outdoor walking efficiency in older adults

description: As people grow older, their walking efficiency declines, posing constraints on mobility and affecting independence and life quality. While wearable assistive technologies are recognized as a potential solution for age-related movement challenges, few have proven effective for older adults, predominantly within controlled laboratory experiments. Here we present WalkON, a pair of soft robotic shorts designed to enhance walking efficiency for older individuals by assisting hip flexion. The system features a compact and lightweight tendon-driven design, using a controller based on natural leg movements to autonomously assist leg propagation. To assess the impact of WalkON in daily walking, we initially conducted a technology assessment with young adults on a demanding outdoor uphill 500m hiking trail. Subsequently, we validated our findings with a group of older adults walking on a flat outdoor 400m track. WalkON significantly reduced the metabolic cost of transport by 17.79% for young adults during uphill walking. Concurrently, participants reported high perceived control over their voluntary movements (self-reported mean score of 6.20 out of 7 on a Likert scale). Similarly, older adults saved 10.48% of metabolic cost when using WalkON during level ground walking, while retaining a strong sense of movement control (mean score of 6.09 out of 7). These findings emphasize the potential of wearable assistive devices to improve efficiency in outdoor walking, suggesting promising implications for promoting physical well-being and advancing mobility, particularly during the later stages of life. <br>
DOI: 10.6084/m9.figshare.26954608
title: Supplementary Material for: A patient with acute pro-myelocytic leukemia treated with Isotretinoin: A case report

description: Introducion: ATRA (All-trans retinoic acid) in combination with arsenic trioxide (ATO) is standard therapy for low-to-intermediate risk acute promyelocytic leukemia (APL). Isotretinoin, an agent used for acne vulgaris is similar in its chemical structure and effects to ATRA and single case studies report a probable effectiveness in APL. Case presentation: In this case, a patient with newly diagnosed APL was treated with Isotretinoin/ATO instead of ATRA/ATO for nearly 4 weeks due to a prescription error and anyway reached a stable complete remission as if treated with ATRA/ATO. Conclusion: Treatment of APL with Isotretinoin instead of ATRA could possibly be effective.
DOI: 10.7924/r45b0962f
title: Data from: Gulf of Mexico Ecosystem Service Logic Models & Socio-Economic Indicators (GEMS)

description: Billions of dollars are being spent on restoration of Gulf of Mexico ecosystems with the intent to bolster the environment and revitalize coastal communities and economies. While it is clear that many restoration funders and practitioners aim to create environmental and human benefits, most projects do not report on social and economic outcomes. The few exceptions use inconsistent metrics that complicate comparing project successes or rolling up Gulf-wide impacts. Without a consistent approach for identifying and measuring restoration impacts on communities and the economy, funders and practitioners run the risk of using funds inefficiently or failing to meet goals for community resilience and economic recovery. The GEMS project aimed to help overcome these challenges by (1) developing ecosystem service logic models that enable the selection of restoration projects likely to achieve target economic and social goals and (2) identifying a set of core metrics that enable consistent measurement of social and economic outcomes from Gulf restoration. The metrics and models serve as a starting point and should be tailored to each project.
DOI: 10.17596/0003947
title: T-phase records on October 8, 2023 (UTC) observed by MERMAID P0057 and T0100 floats

description: T-phase (underwater acoustic wave) records on October 8, 2023 (UTC) generated by submarine volcanic activity at the Sofu Seamount, recorded by MERMAID float P0057, T0100. Data are in Seismic Analysis Code format (https://seiscode.iris. washington.edu/projects/sac/). Published in Fujiwara et al. (2024).
DOI: 10.18434/t4nk50
title: NIST Electron Elastic-Scattering Cross-Section Database - SRD 64 Version 3.2
DOI: 10.21222/c2tc95
title: A database of seismic records at instrumented levee sites in Japan
DOI: 10.21227/rbvf-2h90
title: A hardware-in-the-loop Secure Water Treatment dataset for cyber-physical security testing

description: This dataset supports researchers in the validation process of solutions such as Intrusion Detection Systems (IDS) based on artificial intelligence and machine learning techniques for the detection and categorization of threats in Cyber Physical Systems (CPS). To that aim, data have been acquired from a Secure Water Treatment (SWaT) hardware-in-the-loop testbed which emulates water passage between nine tanks via solenoid-valves, pumps, pressure and flow sensors. The testbed is composed by a real partition which is virtually connected to a simulated one. The presented dataset consists of both physical and virtual process measurements in order to highlight the consequences of attacks in the physical process, in control variables as well as in network traffic behavior. Data have been acquired during four different acquisitions for a total of about two hours in normal behaviour and in presence of anomalies induced by different types of physical and/or cyber events.
DOI: 10.34943/c20ba554-07a1-4f2c-a3cf-7898b871ea12
title: Patricia Bay Echosounder, Bioacoustic Deployed 2020-09-25

description: The ASL AZFP Echosounder 55167 was deployed on 2020-09-25 at Patricia Bay. Patricia Bay is located in the Saanich Inlet, on the southern tip of Vancouver Island. This device is a Echosounder, Bioacoustic. Echosounders are used to measure acoustic backscatter as a proxy for detecting zooplankton, fish, bubbles or other particles in the water-column. An echosounder has one or more transducers which emit acoustic pulses at a particular frequency. When the pulses strike animals or other objects in the water, echoes are produced, which can be detected and converted by the transducers back into electrical signals. Software is then used to determine distances, sizes, concentrations and movements of organisms and other objects in the water. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.3886/e193901v1
title: Population, Productivity, and Sustainable Consumption

description: How does the sustainable level of consumption depend on productivity 
growth and the size and growth rate of the population? What is the 
effect of uncertainty over these growth rates? I address these questions
 using a model in which productivity and population growth are 
stochastic, and social welfare allows for human lives to have (positive 
or negative) intrinsic value. I show how the maximum sustainable 
consumption-wealth ratio depends on expected rates of productivity and 
population growth, volatility of those growth rates, and the extent to 
which welfare depends directly on the size of the population. For 
plausible parameter values, the sustainable consumption-wealth ratio is 
well below the optimal ratio that maximizes welfare. This raises a 
question: Given its cost, should sustainability be a social objective?<br>
DOI: 10.5066/p13v8buk
title: Landscape data compiled for fish health sites in and around the Chesapeake Bay Watershed.

description: These data include estimates of landcover and land use characteristics including high phytoestrogen crop cover, estimated pesticide applications, EPA PFAS facilities, nutrients from biosolids, and select climate (temperature and precipitation) variables summarized for several fish health sites in the eastern United States.
DOI: 10.5281/zenodo.10012831
title: Dataset #1 related to article "NaCl enhances CD8+ T-cell effector functions in cancer immunotherapy"

description: CD8+ T cells control tumors but inevitably become dysfunctional. Ionic metabolism is emerging as a regulator of CD8+ T cells in anti-tumor immunity. We show that sodium chloride (NaCl) counteracts T-cell dysfunction to promote cancer regression. NaCl supplementation during CD8+ T-cell culture induced potent effector differentiation, IFN-g production and cytotoxicity while maintaining gene networks responsible for stem-like plasticity. Accordingly, adoptive transfer of tumor-specific T cells resulted in superior anti-tumor immunity in a humanized model. In mice, high-salt diet reduced growth of experimental tumors in a CD8+ T cell-dependent manner, by inhibiting terminal differentiation, and by enhancing the effector potency of CD8+ T cells. Mechanistically, NaCl enhanced glutamine consumption that was critical for transcriptional, epigenetic and functional reprogramming. In humans, CD8+ T cells undergoing antigen recognition in tumors and predicting favorable response to checkpoint blockade immunotherapy resembled those induced by NaCl. Thus, NaCl metabolism is a major regulator of CD8+ T-cell effector function, with potential translation in cancer immunotherapy.
DOI: 10.5281/zenodo.11064829
title: Data and codes

description: The code folder contains python codes to generate the figures of the paper. The data folder contains daily/monthly streamflow, lake water level, and irrigation water data to generate the analysis and figures in the paper, where OBS, NAT, RES and HUM represent in-situ observations, model simulations under nature scenario, model simulations under reservoir scenario and model simulations under all human activities, respectively.
DOI: 10.5281/zenodo.11207788
title: Dataset #2 related to article "NaCl enhances CD8+ T-cell effector functions in cancer immunotherapy"

description: CD8+ T cells control tumors but inevitably become dysfunctional. Ionic metabolism is emerging as a regulator of CD8+ T cells in anti-tumor immunity. We show that sodium chloride (NaCl) counteracts T-cell dysfunction to promote cancer regression. NaCl supplementation during CD8+ T-cell culture induced potent effector differentiation, IFN-g production and cytotoxicity while maintaining gene networks responsible for stem-like plasticity. Accordingly, adoptive transfer of tumor-specific T cells resulted in superior anti-tumor immunity in a humanized model. In mice, high-salt diet reduced growth of experimental tumors in a CD8+ T cell-dependent manner, by inhibiting terminal differentiation, and by enhancing the effector potency of CD8+ T cells. Mechanistically, NaCl enhanced glutamine consumption that was critical for transcriptional, epigenetic and functional reprogramming. In humans, CD8+ T cells undergoing antigen recognition in tumors and predicting favorable response to checkpoint blockade immunotherapy resembled those induced by NaCl. Thus, NaCl metabolism is a major regulator of CD8+ T-cell effector function, with potential translation in cancer immunotherapy.
DOI: 10.5281/zenodo.11663566
title: Coseismic Surface Ruptures of 20 Strike-Slip Earthquakes Measured from Geodetic Imaging Data

description: Coseismic surface displacement maps for 20 strike-slip surface rupturing earthquakes measured from radar and optical pixel tracking data. 

This dataset contains 2D and 3D surface displacement maps, fault traces, total fault-parallel slip measured from the surface displacement maps, a number of strain maps and image IDs used to generate the surface displacement maps
DOI: 10.5281/zenodo.13359283
title: Spherical Indentation tests on rail R260 steel

description: This data set contains photos and measurement data from spherical indentation tests on R260 rail steel. This data set belongs to the following journal article:

Bettina Suhr, William A. Skipper,  Roger Lewis, Klaus Six:DEM modelling of surface indentations caused by granular materials: application to wheel–rail sanding,Computational Particle Mechanics, 2024,https://doi.org/10.1007/s40571-024-00816-w

A flat specimen made of the R260 rail steel was indented by a stainless steel (AISI 440C) ball bearing of 8.73 mm diameter. The following normal loads were applied for indentation tests: 100 N, 500 N, 1000 N, 2000 N, 3000 N, 4000 N, 5000 N, 6000 N, 7500 N.  For each load level, two tests were conducted to check the repeatability of the measurement. After tests, the indent was analysed using the Alicona InfiniteFocusSL 3D optical profilometer. The Alicona captured a 3D scan covering a 3.66 mm x 3.66 mm area (vertical resolution of 500 nm).  

Available data and file naming conventions

For the test at 100 N load, the available files are named as follows:

11-32__100N.jpg: image coloured by the indentation depth11-32__100N_Diameter.jpg: image of the indent with visually measured diameter of the indent11-32__100N.txt: point cloud of the analyzed surface

The repetition measurements’ files at 100N load are named: 11-32__100N_a.jpg, 11-32__100N_Diameter_a.jpg, 11-32__100N_a.txt

The files belonging to test with higher applied load are named accordingly.

This research was funded in whole, or in part, by the Austrian Science Fund (FWF) project P 34273: DEM modelling of adhesion in sanded wheel-rail contacts.

This work was conducted at Virtual Vehicle Research GmbH in Graz, Austria. The authors would like to acknowledge the financial support within the COMET K2 Competence Centers for Excellent Technologies from the Austrian Federal Ministry for Climate Action (BMK), the Austrian Federal Ministry for Labour and Economy (BMAW), the Province of Styria (Dept. 12) and the Styrian Business Promotion Agency (SFG). The Austrian Research Promotion Agency (FFG) has been authorised for the programme management.
DOI: 10.5281/zenodo.13696564
title: Rapid Impact Crater Relaxation Caused by An Insulating Methane Clathrate Crust on Titan: Data and Marc Files

description: Data files for several figures in the manuscript "Rapid Impact Crater Relaxation Caused by An Insulating Methane Clathrate Crust on Titan" Published in The Planetary Science Journal. This includes data for the following figures: 4, 6, 7, 8 and 10. Two example Hexagon Marc-Mentat mud files for the axisymmetric thermal simulation and mechanical simulation of a 10 km thick clathrate, 85 km diameter crater are also included.

Each column is self-explanatory except for the two relative depth data files. "Relative_Depth_Deep_Fig8" includes the results for simulations that use the initially deeper crater depth, and "Relative_Depth_Shallow_Fig8" includes the results for simulations that use the initially shallower crater depth. The columns are labeled with a shorthand notation for pairs of columns that represent the relative crater depth at specified times in the simulation. An example of time is “t(yr)_v21_120_5” and the corresponding relative depth column is “v21_Rd_120_5.” Time is given in years and relative depth is unitless. These specific examples provide results for a simulation that has a viscosity cutoff of 10^21 Pa s and a 120 km diameter crater with a 5 km thick methane clathrate crust overlying water ice.
description: This work was primarily funded by the NASA Cassini Data Analysis Program project “The Influence of Clathrates on Titan’s Ice Shell” (Award No. 80NSSC22K0309). Part of this work was supported by the NASA Astrobiology Institute through its JPL-led project “Habitability of Hydrocarbon Worlds: Titan and Beyond” (Award No. 17-NAI18_2-0017) and part was carried out at the Jet Propulsion Laboratory, California Institute of Technology, under contract with NASA. Government sponsorship is acknowledged.
DOI: 10.5281/zenodo.2585432
title: A labeled Ecore metamodel dataset for domain clustering

description: Manually labeled 555 metamodels mined from GitHub in April 2017. 

Domains: (1) bibliography, (2) conference management, (3) bug/issue tracker, (4) build systems, (5) document/office products, (6) requirement/use case, (7) database/sql, (8) state machines, (9) petri nets

Procedure for constructing the dataset: fully manual, by searching for certain keywords and regexes (e.g. "state" and "transition" for state machines) in the metamodels and inspecting the results for inclusion. 

Format for the file names: ABSINDEX_CLUSTER_ITEMINDEX_name_hash.ecore
DOI: 10.5281/zenodo.6406949
title: Dataset: Nuclear moments of indium isotopes reveal abrupt change at magic number 82

description: Dataset for the figures in the paper 'Nuclear moments of indium isotopes reveal abrupt<br> change at magic number 82' Preprint DOI: https://doi.org/10.21203/rs.3.rs-611360/v1