cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.928401
title: Isolation and functional charaterization of Regulatory T cells from Human peripheral blood

description: Regulatory T cells are known to supress wide range of anti-tumour responses. It is now evident that Tregs are one among the main barriers for cancer immunotherapy. Until now there have been several methods described to isolate Tregs. It is also been documented that the immunosuppressive functions of CD4+CD25High Tregs in cancer patients is significantly higher than in healthy donors. This study has been designed to isolate CD4+CD25highCD127low/- Tregs from human PBMCs (healthy donors) and functionally characterize them based on their immunosuppression ability
DOI: 10.6084/m9.figshare.928401.v1
title: Isolation and functional charaterization of Regulatory T cells from Human peripheral blood

description: Regulatory T cells are known to supress wide range of anti-tumour responses. It is now evident that Tregs are one among the main barriers for cancer immunotherapy. Until now there have been several methods described to isolate Tregs. It is also been documented that the immunosuppressive functions of CD4+CD25High Tregs in cancer patients is significantly higher than in healthy donors. This study has been designed to isolate CD4+CD25highCD127low/- Tregs from human PBMCs (healthy donors) and functionally characterize them based on their immunosuppression ability
DOI: 10.6084/m9.figshare.928352
title: SWEAVE

description: SWEAVE: Aytes, A.*, Mitrofanova, A.*, Lefebvre, C.*, Alvarez, M. J., Castillo-Martin, M., Zheng, T., Eastham, J. A., Gopalan, A., Pienta, K. J., Shen, M. M., Califano, A., and Abate-Shen, C. (2014). Cross-species analysis of genome-wide regulatory networks identifies a synergistic interaction between FOXM1 and CENPF that drives prostate cancer malignancy. Cancer Cell. *Equal contributions.
DOI: 10.6084/m9.figshare.928353
title: SWEAVE: Cross-species analysis of genome-wide regulatory networks identifies a synergistic interaction between FOXM1 and CENPF that drives prostate cancer malignancy

description: Aytes, A.*, Mitrofanova, A.*, Lefebvre, C.*, Alvarez, M. J., Castillo-Martin, M., Zheng, T., Eastham, J. A., Gopalan, A., Pienta, K. J., Shen, M. M., Califano, A., and Abate-Shen, C. (2014). Cross-species analysis of genome-wide regulatory networks identifies a synergistic interaction between FOXM1 and CENPF that drives prostate cancer malignancy. Cancer Cell. *Equal contributions.
DOI: 10.6084/m9.figshare.928355
title: GenoCAD Grammar to design synthetic transcription factors in eukaryotes

description: This file can be imported into GenoCAD for the design of synthetic transcription factors (sTFs) in eukaryotic cells. Knowledge derived from experimental evidence was captured in this grammar to guide the user to create designer transcription factors that should operate as intended. The grammar can be easily updated and refined as our experience with using sTFs in different contexts increases. This file is described extensively in the article referenced below.
DOI: 10.6084/m9.figshare.928400
title: NOAA Weather Data Set

description: NOAA Data
DOI: 10.6084/m9.figshare.928349
title: Not all International Collaboration is Beneficial: The Mendeley Readership and Citation Impact of Biochemical Research Collaboration

description: Data from the paper Not all International Collaboration is Beneficial: The Mendeley Readership and Citation Impact of Biochemical Research Collaboration by Pardeep Sud, Mike Thelwall
DOI: 10.6084/m9.figshare.928355.v1
title: GenoCAD Grammar to design synthetic transcription factors in eukaryotes

description: This file can be imported into GenoCAD for the design of synthetic transcription factors (sTFs) in eukaryotic cells. Knowledge derived from experimental evidence was captured in this grammar to guide the user to create designer transcription factors that should operate as intended. The grammar can be easily updated and refined as our experience with using sTFs in different contexts increases. This file is described extensively in the article referenced below.
DOI: 10.6084/m9.figshare.928338
title: Companion of the Europar StarPU+Simgrid article

description: This data set comprises traces and measurements obtained by Luka Stanisic to demonstrate the validity of SimGrid simulations of the StarPU runtime.
DOI: 10.6084/m9.figshare.928349.v1
title: Not all International Collaboration is Beneficial: The Mendeley Readership and Citation Impact of Biochemical Research Collaboration

description: Data from the paper Not all International Collaboration is Beneficial: The Mendeley Readership and Citation Impact of Biochemical Research Collaboration by Pardeep Sud, Mike Thelwall
DOI: 10.6084/m9.figshare.928352.v1
title: SWEAVE: Cross-species analysis of genome-wide regulatory networks identifies a synergistic interaction between FOXM1 and CENPF that drives prostate cancer malignancy

description: SWEAVE: Cross-species analysis of genome-wide regulatory networks identifies a synergistic interaction between FOXM1 and CENPF that drives prostate cancer malignancy
DOI: 10.6084/m9.figshare.928352.v2
title: SWEAVE: Aytes, A.*, Mitrofanova, A.*, Lefebvre, C.*, Alvarez, M. J., Castillo-Martin, M., Zheng, T., Eastham, J. A., Gopalan, A., Pienta, K. J., Shen, M. M., Califano, A., and Abate-Shen, C. (2014). Cross-species analysis of genome-wide regulatory network

description: SWEAVE: Aytes, A.*, Mitrofanova, A.*, Lefebvre, C.*, Alvarez, M. J., Castillo-Martin, M., Zheng, T., Eastham, J. A., Gopalan, A., Pienta, K. J., Shen, M. M., Califano, A., and Abate-Shen, C. (2014). Cross-species analysis of genome-wide regulatory networks identifies a synergistic interaction between FOXM1 and CENPF that drives prostate cancer malignancy. Cancer Cell. *Equal contributions.
DOI: 10.6084/m9.figshare.928338.v1
title: Companion of the Europar StarPU+Simgrid article

description: This data set comprises traces and measurements obtained by Luka Stanisic to demonstrate the validity of SimGrid simulations of the StarPU runtime.
DOI: 10.6084/m9.figshare.928352.v3
title: Cross-species analysis of genome-wide regulatory networks identifies a synergistic interaction between FOXM1 and CENPF that drives prostate cancer malignancy. Cancer Cell. *Equal contributions.

description: SWEAVE: Aytes, A.*, Mitrofanova, A.*, Lefebvre, C.*, Alvarez, M. J., Castillo-Martin, M., Zheng, T., Eastham, J. A., Gopalan, A., Pienta, K. J., Shen, M. M., Califano, A., and Abate-Shen, C. (2014). Cross-species analysis of genome-wide regulatory networks identifies a synergistic interaction between FOXM1 and CENPF that drives prostate cancer malignancy. Cancer Cell. *Equal contributions.
DOI: 10.6084/m9.figshare.928338.v2
title: Companion of the Europar StarPU+Simgrid article

description: This data set comprises traces and measurements obtained by Luka Stanisic to demonstrate the validity of SimGrid simulations of the StarPU runtime.
DOI: 10.6084/m9.figshare.928352.v5
title: SWEAVE

description: SWEAVE: Aytes, A.*, Mitrofanova, A.*, Lefebvre, C.*, Alvarez, M. J., Castillo-Martin, M., Zheng, T., Eastham, J. A., Gopalan, A., Pienta, K. J., Shen, M. M., Califano, A., and Abate-Shen, C. (2014). Cross-species analysis of genome-wide regulatory networks identifies a synergistic interaction between FOXM1 and CENPF that drives prostate cancer malignancy. Cancer Cell. *Equal contributions.
DOI: 10.6084/m9.figshare.928352.v4
title: Cross-species analysis of genome-wide regulatory networks identifies a synergistic interaction between FOXM1 and CENPF that drives prostate cancer malignancy

description: SWEAVE: Aytes, A.*, Mitrofanova, A.*, Lefebvre, C.*, Alvarez, M. J., Castillo-Martin, M., Zheng, T., Eastham, J. A., Gopalan, A., Pienta, K. J., Shen, M. M., Califano, A., and Abate-Shen, C. (2014). Cross-species analysis of genome-wide regulatory networks identifies a synergistic interaction between FOXM1 and CENPF that drives prostate cancer malignancy. Cancer Cell. *Equal contributions.
DOI: 10.6084/m9.figshare.928338.v3
title: Companion of the Europar StarPU+Simgrid article

description: This data set comprises traces and measurements obtained by Luka Stanisic to demonstrate the validity of SimGrid simulations of the StarPU runtime.
DOI: 10.6084/m9.figshare.928249
title: Wild Planet Spy Video TRAKR Software and Documentation Archive

description: Wild Planet's Spy Video TRAKR archive. As of the creation of this text file, these are the only Spy Video Trakr programming documentation that is left on the Wild planet webiste http://dev.spygear.net/help/files/ yet there are still TRAKR owners who are interested in programming their TRAKRs and I have archived the documentation here for them to use (in case the above URL goes dark).
DOI: 10.6084/m9.figshare.928338.v4
title: Companion of the Europar StarPU+Simgrid article

description: This data set comprises traces and measurements obtained by Luka Stanisic to demonstrate the validity of SimGrid simulations of the StarPU runtime.
DOI: 10.6084/m9.figshare.928237
title: new fileset

description: We investigated relationships between relational models, collective identity, and collective action during the early period of the 2013 Turkish uprising. The results showed that collective action was positively influenced by preferences for Communal Sharing, collective identity, but negatively related to preferences for Authority Ranking. We interpret these findings as people’s learned preferences for specific relational models to have significant roles in the supporting of collective action. Importantly, these findings identify important types of relationships in intergroup research.
DOI: 10.6084/m9.figshare.928237.v1
title: new fileset

description: We investigated relationships between relational models, collective identity, and collective action during the early period of the 2013 Turkish uprising. The results showed that collective action was positively influenced by preferences for Communal Sharing, collective identity, but negatively related to preferences for Authority Ranking. We interpret these findings as people’s learned preferences for specific relational models to have significant roles in the supporting of collective action. Importantly, these findings identify important types of relationships in intergroup research.
DOI: 10.6084/m9.figshare.928338.v5
title: Companion of the Europar StarPU+Simgrid article

description: This data set comprises traces and measurements obtained by Luka Stanisic to demonstrate the validity of SimGrid simulations of the StarPU runtime.
DOI: 10.6084/m9.figshare.928167
title: GenoCAD Grammar to design Chlamydomonas reinhardtii expression vectors

description: This is a grammar that can be imported into the web-based application GenoCAD to design expression vectors for expressing genes in the chloroplast of Chlamydomonas reinhardtii. Please refer to the publication linked to this entry for more information about this dataset.
DOI: 10.6084/m9.figshare.928338.v6
title: Companion of the Europar StarPU+Simgrid article

description: This data set comprises traces and measurements obtained by Luka Stanisic to demonstrate the validity of SimGrid simulations of the StarPU runtime.
DOI: 10.6084/m9.figshare.928338.v7
title: Companion of the Europar StarPU+Simgrid article

description: This data set comprises traces and measurements obtained by Luka Stanisic to demonstrate the validity of SimGrid simulations of the StarPU runtime.
DOI: 10.6084/m9.figshare.928142
title: FTIR Background Subtract Program v1.1.0

description: This is version 1.1.0. Small updates will be pushed regularly to the Github repository page [https://github.com/kaylai/ftir-background-subtract]. Major updates will be posted here on figshare. Updates in VERSION 1.1.0: 1. Fixed indentation problem in code (some lines were not indented properly and caused problems when copy/pasting code)<br>2. The central plot now also displays the actual (user input) data as a black curve atop the background fit<br>3. The lower plot now also displays a red horizontal line at y=0 for a better comparison of the background subtracted curve to the background fit itself (which plots as a horizontal line at y=0).<br>4. Updated the README to better explain the three plot displays and added information about keyboard shortcuts that can be used in lieu of the toolbar, which does not show up on Mac OS for some reason. Program description: FTIR Background Subtract program written in Python by Nial Peters and modified by Kayla Iacovino. Used in the PhD thesis of Kayla Iacovino to subtract backgrounds from FTIR data taken on volatile-bearing (H2O and CO2) silicate glasses. This code is not supported, but if you're having issues using it, send us an email, and we'll see what we can do. Check the README file (also included in the zipped archive) for information on usage and dependencies.
DOI: 10.6084/m9.figshare.928144
title: Gaussian Job Archive for C42H48ClCuIN5

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928167.v2
title: GenoCAD Grammar to design Chlamydomonas reinhardtii expression vectors

description: This is a grammar that can be imported into the web-based application GenoCAD to design expression vectors for expressing genes in the chloroplast of Chlamydomonas reinhardtii. Please refer to the publication linked to this entry for more information about this dataset.
DOI: 10.6084/m9.figshare.928139
title: Gaussian Job Archive for C6H13NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928144.v1
title: Gaussian Job Archive for C42H48ClCuIN5

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928137
title: syntax

description: replication syntax
DOI: 10.6084/m9.figshare.928138
title: Gaussian Job Archive for C6H13NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928139.v1
title: Gaussian Job Archive for C6H13NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928167.v1
title: GenoCAD Grammar to design Chlamydomonas reinhardtii expression vectors

description: This is a grammar that can be imported into the web-based application GenoCAD to design expression vectors for expressing genes in the chloroplast of Chlamydomonas reinhardtii. Please refer to the publication linked to this entry for more information about this dataset.
DOI: 10.6084/m9.figshare.928131
title: Pharma Vulnerability Index

description: A rough attempt to collate public information on Big Pharmas and their sites to attempt to predict likely mergers, closures, divestments - a datadump
DOI: 10.6084/m9.figshare.928137.v1
title: syntax

description: replication syntax
DOI: 10.6084/m9.figshare.928129
title: A common cortical metrial for spatial, temporal, and social distance

description: Using multivariate pattern analysis with fMRI data, we found that a region in right IPL encodes distances across spatial, temporal and social domains.
DOI: 10.6084/m9.figshare.928097
title: Data for 'retroactive training' study

description: SPSS data file for this study.
DOI: 10.6084/m9.figshare.928128
title: Gaussian Job Archive for C42H48ClCuIN5

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928129.v1
title: A common cortical metrial for spatial, temporal, and social distance

description: Using multivariate pattern analysis with fMRI data, we found that a region in right IPL encodes distances across spatial, temporal and social domains.
DOI: 10.6084/m9.figshare.928097.v1
title: Data for 'retroactive training' study

description: SPSS data file for this study.
DOI: 10.6084/m9.figshare.928128.v1
title: Gaussian Job Archive for C42H48ClCuIN5

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928131.v2
title: Pharma Vulnerability Index

description: A rough attempt to collate public information on Big Pharmas and their sites to attempt to predict likely mergers, closures, divestments - a datadump
DOI: 10.6084/m9.figshare.928142.v2
title: FTIR Background Subtract Program

description: FTIR Background Subtract program written in Python by Nial Peters and modified by Kayla Iacovino. Used in the PhD thesis of Kayla Iacovino to subtract backgrounds from FTIR data taken on volatile-bearing (H2O and CO2) silicate glasses. This code is not supported, but if you're having issues using it, send us an email, and we'll see what we can do. Check the README file (also included in the zipped archive) for information on usage and dependencies.
DOI: 10.6084/m9.figshare.928087
title: Gaussian Job Archive for C20H20ClCuIN5

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928091
title: Data used in Gray et al. 2014 Dung beetles in riparian reserves Ecology and Evolution

description: Data used in Gray et al. 2014 Do riparian reserves support dung beetle biodiversity and ecosystem services in oil-palm dominated tropical landscapes Ecology and Evolution
DOI: 10.6084/m9.figshare.928095
title: Companion of the StarPU+SimGrid article

description: This data set comprises traces and measurements obtained by Luka Stanisic to demonstrate the validity of SimGrid simulations of the StarPU runtime.
DOI: 10.6084/m9.figshare.928142.v3
title: FTIR Background Subtract Program

description: FTIR Background Subtract program written in Python by Nial Peters and modified by Kayla Iacovino. Used in the PhD thesis of Kayla Iacovino to subtract backgrounds from FTIR data taken on volatile-bearing (H2O and CO2) silicate glasses. This code is not supported, but if you're having issues using it, send us an email, and we'll see what we can do. Check the README file (also included in the zipped archive) for information on usage and dependencies.
DOI: 10.6084/m9.figshare.928087.v1
title: Gaussian Job Archive for C20H20ClCuIN5

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.928131.v1
title: Pharma Vulnerability Index

description: A rough attempt to collate public information on Big Pharmas and their sites to attempt to predict likely mergers, closures, divestments - a datadump
DOI: 10.6084/m9.figshare.928058
title: Lagomorph diversification and extinction risk

description: Data and R code for statistical analyses and visualization of results. Legend for variable names in Data Definition table.
DOI: 10.6084/m9.figshare.928142.v4
title: FTIR Background Subtract Program v1.1.0

description: This is version 1.1.0. The original version (1.0.0) can be found on its Google Code page [http://ftir-background-subtract.googlecode.com]. Major updates will be posted here on figshare. The project's history (older versions) are archived on the Google Code page. Updates in VERSION 1.1.0: 1. Fixed indentation problem in code (some lines were not indented properly and caused problems when copy/pasting code)<br>2. The central plot now also displays the actual (user input) data as a black curve atop the background fit<br>3. The lower plot now also displays a red horizontal line at y=0 for a better comparison of the background subtracted curve to the background fit itself (which plots as a horizontal line at y=0).<br>4. Updated the README to better explain the three plot displays and added information about keyboard shortcuts that can be used in lieu of the toolbar, which does not show up on Mac OS for some reason. Program description: FTIR Background Subtract program written in Python by Nial Peters and modified by Kayla Iacovino. Used in the PhD thesis of Kayla Iacovino to subtract backgrounds from FTIR data taken on volatile-bearing (H2O and CO2) silicate glasses. This code is not supported, but if you're having issues using it, send us an email, and we'll see what we can do. Check the README file (also included in the zipped archive) for information on usage and dependencies.
DOI: 10.6084/m9.figshare.926519
title: RNASeq of DA neurons from SNpc and VTA

description: <br>RNA-seq of SNpc DA neurons (n=6) and VTA DA neurons (n=6) from Dat bacTRAP mice. Samples are named as "C" for control and "KD" for knockdown. The Fileset contains two files "Parkinson_Validation_VTvsSN_counts.txt", which contains the raw counts after mapping to the mm10, and "Parkinson_Validation_VTvsSN_counts_Normalized.txt", which is the count normalized using DEtransform, a function in the ssMarina package that transforms the data by stabilizing the variance, and adding shot noise. Libraries for RNA sequencing were prepared with the TruSeq RNA Sample Preparation v2 kit (Illumina, #RS-122-2002), starting the manufacturer’s low-throughput protocol with the end repair step. The concentration of the RNA-Seq libraries was determined on a 2100 Bioanalyzer using High Sensitivity DNA Chips. Subsequently, two libraries with different adapters were multiplexed for sequencing. After confirming the concentration of the multiplexed samples on a 2100 Bioanalyzer using High Sensitivity DNA Chips, samples were analyzed on an Illumina HiSeq 2000 sequencer using 100 bp single-end sequencing.
DOI: 10.6084/m9.figshare.928091.v1
title: Riparian buffer zone dung beetle conservation, Borneo

description: Data used in Gray et al. 2014 Do riparian reserves support dung beetle biodiversity and ecosystem services in oil-palm dominated tropical landscapes Ecology and Evolution, In Press
DOI: 10.6084/m9.figshare.926518
title: RNASeq of Satb1 Knockdown

description: RNA-seq of dopaminergic neurons of the Substantia Nigra of Dat bacTRAP mice treated with siSatb1 or control (n=3, biological replicates). Samples are named as "C" for control and "KD" for knockdown. The Fileset contains two files "Parkinson_Validation_siSatb1_Counts.txt", which contains the raw counts after mapping to the mm10, and "Parkinson_Validation_siSatb1_Normalized.txt", which is the count normalized using DEtransform, a function in the ssMarina package that transforms the data by stabilizing the variance, and adding shot noise. Libraries for RNA sequencing were prepared with the TruSeq RNA Sample Preparation v2 kit (Illumina, #RS-122-2002), starting the manufacturer’s low-throughput protocol with the end repair step. The concentration of the RNA-Seq libraries was determined on a 2100 Bioanalyzer using High Sensitivity DNA Chips. Subsequently, two libraries with different adapters were multiplexed for sequencing. After confirming the concentration of the multiplexed samples on a 2100 Bioanalyzer using High Sensitivity DNA Chips, samples were analyzed on an Illumina HiSeq 2000 sequencer using 100 bp single-end sequencing.
DOI: 10.6084/m9.figshare.928058.v2
title: Lagomorph diversification and extinction risk

description: Data and R code for statistical analyses and visualization of results. Legend for variable names in Data Definition table.
DOI: 10.6084/m9.figshare.928091.v2
title: Data used in Gray et al. 2014 Do riparian reserves support dung beetle biodiversity and ecosystem services in oil-palm dominated tropical landscapes Ecology and Evolution, In Press

description: Data used in Gray et al. 2014 Do riparian reserves support dung beetle biodiversity and ecosystem services in oil-palm dominated tropical landscapes Ecology and Evolution, In Press
DOI: 10.6084/m9.figshare.928058.v1
title: Lagomorph diversification and extinction risk

description: Data and R code for statistical analyses and visualization of results. Legend for variable names in Data Definition table.