cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3761562.v1153
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25387/g3.8001572.v1
title: Supplemental Material for Miller et al., 2019

description: Figure S1. Maximization of collinearity in the final consensus map from male and female informative markers. <br>Figure S2. Linkage map assignment heat map of recombination fractions and LOD scores for scaffolds with sufficient markers for mapping. <br>Figure S3. LGs that differed between the two sex-specific maps and the order and orientation of the consensus map (ALLMAPs) scaffolds in closely related platyfish and medaka. <br><br>Figure S4. Platyfish and medaka dot-plots for each killifish LG. <br><br>Figure S5. Zebrafish ortholog dot-plots. <br><br>Figure S6. Dot plots for each human (right, 1-23) and spotted gar (left, 1-29) chromosome.<br>Figure S7. Circos plots of fusions and duplicated chromosomes. <br>File S1. - BARCODESFile S2. - CUSTOM PERL SCRIPTSFile S3. - CUSTOM R SCRIPTSFile S4. - ADDRESS FOR GFFs ALL TAXAFile S5. - MICROSAT MAP TABLEFile S6. – CIRCOS HOMOLOGY <br><br><b><br></b>
DOI: 10.25387/g3.8001572
title: Supplemental Material for Miller et al., 2019

description: Figure S1. Maximization of collinearity in the final consensus map from male and female informative markers. <br>Figure S2. Linkage map assignment heat map of recombination fractions and LOD scores for scaffolds with sufficient markers for mapping. <br>Figure S3. LGs that differed between the two sex-specific maps and the order and orientation of the consensus map (ALLMAPs) scaffolds in closely related platyfish and medaka. <br><br>Figure S4. Platyfish and medaka dot-plots for each killifish LG. <br><br>Figure S5. Zebrafish ortholog dot-plots. <br><br>Figure S6. Dot plots for each human (right, 1-23) and spotted gar (left, 1-29) chromosome.<br>Figure S7. Circos plots of fusions and duplicated chromosomes. <br>File S1. - BARCODESFile S2. - CUSTOM PERL SCRIPTSFile S3. - CUSTOM R SCRIPTSFile S4. - ADDRESS FOR GFFs ALL TAXAFile S5. - MICROSAT MAP TABLEFile S6. – CIRCOS HOMOLOGY <br><br><b><br></b>
DOI: 10.25387/g3.8001572.v2
title: Supplemental Material for Miller et al., 2019

description: Figure S1. Maximization of collinearity in the final consensus map from male and female informative markers. <br>Figure S2. Linkage map assignment heat map of recombination fractions and LOD scores for scaffolds with sufficient markers for mapping. <br>Figure S3. LGs that differed between the two sex-specific maps and the order and orientation of the consensus map (ALLMAPs) scaffolds in closely related platyfish and medaka. <br><br>Figure S4. Platyfish and medaka dot-plots for each killifish LG. <br><br>Figure S5. Zebrafish ortholog dot-plots. <br><br>Figure S6. Dot plots for each human (right, 1-23) and spotted gar (left, 1-29) chromosome.<br>Figure S7. Circos plots of fusions and duplicated chromosomes. <br>File S1. - BARCODESFile S2. - CUSTOM PERL SCRIPTSFile S3. - CUSTOM R SCRIPTSFile S4. - ADDRESS FOR GFFs ALL TAXAFile S5. - MICROSAT MAP TABLEFile S6. – CIRCOS HOMOLOGY <br><br><b><br></b>
DOI: 10.25387/g3.8127200
title: Supplemental Material for Cuevas, Prom, and Cruet-Burgos, 2019

description: The list of NPGS Ethiopian accessions used in the study and their respectively anthracnose resistance response. Supplementary Figure S1 Log quantile–quantile (QQ) p-value plots for the genome-wide association analysis for anthracnose resistance response. a) Based on ECMLM using the quantitative data of NPGS Ethiopian core set; b) Based on ECMLM using the quantitative data of NPGS Ethiopian core set and the SAP.Table S1 List of sorghum accessions from the NPGS Ethiopian collection. Table S2 Anthracnose resistance response of 334 sorghum accession from NPGS Ethiopian germplasm collection.Table S3 Putative single nucleotide polymorphism coordinates for the partial sequences of three candidate anthracnose resistant loci in sorghum. <br><br>
DOI: 10.25387/g3.8127200.v1
title: Supplemental Material for Cuevas, Prom. and Cruet-Burgos, 2019

description: The list of NPGS Ethiopian accessions used in the study and their respectively anthracnose resistance response. Supplementary Figure S1 Log quantile–quantile (QQ) p-value plots for the genome-wide association analysis for anthracnose resistance response. a) Based on ECMLM using the quantitative data of NPGS Ethiopian core set; b) Based on ECMLM using the quantitative data of NPGS Ethiopian core set and the SAP.Table S1 List of sorghum accessions from the NPGS Ethiopian collection. Table S2 Anthracnose resistance response of 334 sorghum accession from NPGS Ethiopian germplasm collection.Table S3 Putative single nucleotide polymorphism coordinates for the partial sequences of three candidate anthracnose resistant loci in sorghum. <br><br>
DOI: 10.25387/g3.8127200.v2
title: Supplemental Material for Cuevas, Prom, and Cruet-Burgos, 2019

description: The list of NPGS Ethiopian accessions used in the study and their respectively anthracnose resistance response. Supplementary Figure S1 Log quantile–quantile (QQ) p-value plots for the genome-wide association analysis for anthracnose resistance response. a) Based on ECMLM using the quantitative data of NPGS Ethiopian core set; b) Based on ECMLM using the quantitative data of NPGS Ethiopian core set and the SAP.Table S1 List of sorghum accessions from the NPGS Ethiopian collection. Table S2 Anthracnose resistance response of 334 sorghum accession from NPGS Ethiopian germplasm collection.Table S3 Putative single nucleotide polymorphism coordinates for the partial sequences of three candidate anthracnose resistant loci in sorghum. <br><br>
DOI: 10.6084/m9.figshare.3761562.v1154
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25387/g3.7660295.v1
title: Supplemental Material for Lemopoulos et al., 2019

description: Beagle file for the ANGSD pipeline. Genotype probabilities of 116 brown trout. 7520 SNPs are identified and mapped to corresponding location in the Atlantic salmon genome.<br>
DOI: 10.25387/g3.8047727.v2
title: Supplemental Figures for Hauser et al, 2019

description: Figure S1 contains trypan blue exclusion stain of (A) non-irradiated, (B) heat-killed, and (C) laser-irradiated cells. File S1 contains a three-dimensional non-metric multidimensional scaling (3D-NMDS) plot of control (solid symbols) and laser treated (open symbols) samples collected. Table S1 contains transcripts that were differentially expressed at four time points. Volcano plots of significance vs. fold change over time are shown for the differentially expressed genes. Table S2 show the 1-way Analysis of Similarities (ANOSIM) for treatment and time on the resemblance data. Table S3 contains the full annotation of genes from Table 1. Table S4 contains transcripts that were differentially expressed at T15 and T30 at p &lt;0.05 at a minimum 4-fold change.<br>
DOI: 10.25387/g3.7660295
title: Supplemental Material for Lemopoulos et al., 2019

description: Beagle file for the ANGSD pipeline. Genotype probabilities of 116 brown trout. 7520 SNPs are identified and mapped to corresponding location in the Atlantic salmon genome.<br>
DOI: 10.25386/genetics.8162111
title: Supplemental Material for Sanchez et al., 2019

description: We provide supporting data in the form of agarose gels (CHEF gels, 2D gels, standard gels), Southern and northern blotting and hybridization, DNA sequencing (whole genome sequencing and Sanger sequencing), plasmid maps, read-depth analysis, PCR and restriction digests, and four tables.
DOI: 10.6084/m9.figshare.8203415.v5
title: Bat Recording Manager v8.n

description: This program provides a management system for your library of bat (or other) recordings. It can be flexible in its approach but is primarily designed to work with libraries stored and analysed according to a particular protocol which is described below.<br>The program has four main ‘views’. The default view lists all recording sessions, with details of the currently selected session. Sessions can be added or edited manually or deleted from the database. Similarly individual recordings within the session can be added, edited or deleted.<br>The program assumes that the recordings are of bat calls, and incorporates a reference list of bat species, which can also be modified by the user. This reference list also defines a set of ‘tags’ which can be used when analysing recordings to indicate the presence of each species.<br>Recordings may also be displayed ‘by bat species’. In this case the defined species are listed and the recording sessions and recordings which detected the selected species are shown.<br>An ‘Import’ page allows recording sessions which have been analysed using Audacity to be imported into the database. A single folder containing a set of recordings may be imported or a selection of folders can be imported sequentially.Analyse and Import mode allows interaction with Audacity or Kaleidoscope Light for rapid sequential analysis of recording files.The program also provides report generation in a number of formats, storage of screen capture images during analysis, and the ability to replay portions of recordings at reduced speed or in heterodyne (tuned bat detector) mode.This setup file incorporates .NET 4.7.2 and Audacity 2.3.2 which will be installed automatically if required. The Audacity installation will not affect any pre-existing installations. Kaleidoscope interaction requires that Kaleidoscope is installed to C:<br>v8.0 builds on version 7.3 (see other figshare project) but updates to .NET 4.72 and provides virtualized data access for faster loading in some situations.<br>v8.0.7111 completes the conversion to Visual Studio 2019 and .NET 4.72 with extensive refactoring and code tidying using Resharper. Source code is now available from GitHub.https://github.com/jathalls/BatRecordingManager_v8.n<br>v8.0.7115 Bugfixes for issues with identifying and extracting data from .txt files during import or analyse and import.<br>v8.0.7120 Bugfix causing a crash in 'analyse and import' when the filename doesn't include the date<br>v8.0.7130 Adds the ability to save 'played' snippets to a .wav file, either as slowed down audio file or as a heterodyned audio file.<br>
DOI: 10.25386/genetics.8162111.v1
title: Supplemental Material for Sanchez et al., 2019

description: We provide supporting data in the form of agarose gels (CHEF gels, 2D gels, standard gels), Southern and northern blotting and hybridization, DNA sequencing (whole genome sequencing and Sanger sequencing), plasmid maps, read-depth analysis, PCR and restriction digests, and four tables.
DOI: 10.25387/g3.8115998
title: Supplementary Material for Brancini et al., 2019 (in review)

description: The supplementary material pertains to a study about how light regulates gene expression in the entomopathogenic fungus <i>Metarhizium acridum</i>. The time-course study was performed after 5 min of light exposure and employed both RNA-Seq and high-throughput proteomics. The tables contain all relevant data for both RNA-Seq and proteomics, as well as a table in which both data sets are combined. More detailed explanations about the content of each table can be found in their respective files.
DOI: 10.25387/g3.8115998.v1
title: Supplementary Material for Brancini et al., 2019 (in review)

description: The supplementary material pertains to a study about how light regulates gene expression in the entomopathogenic fungus <i>Metarhizium acridum</i>. The time-course study was performed after 5 min of light exposure and employed both RNA-Seq and high-throughput proteomics. The tables contain all relevant data for both RNA-Seq and proteomics, as well as a table in which both data sets are combined. More detailed explanations about the content of each table can be found in their respective files.
DOI: 10.25380/iastate.8178938.v1
title: High-throughput sequencing (HTS) data of plasmid library subjected to Cas12a cleavage

description: Cas12a (formerly Cpf1) is an RNA-guided endonuclease in the CRISPR-Cas immune system that can be easily programmed for genome editing. To understand the native cleavage specificity and cleavage activity of Cas12a, we employed high-throughput <i>in vitro</i> cleavage assays using a plasmid library (pLibrary). We tested the cleavage activity of three Cas12a orthologs – FnCas12a, LbCas12a and AsCas12a. For each Cas12a ortholog, we used three different crRNA sequences and corresponding target libraries (pLibrary), referred to as pLibrary PS4, EMX1 and CCR5. The data set is the high-throughput sequencing (HTS) reads of pLibrary subjected to cleavage by different Cas12a orthologs. The README file contains details about the content of the HTS data set, and the key to the file names and corresponding samples.<br> This HTS data set supports the research article: "Pervasive off-target and double-stranded DNA nicking by CRISPR-Cas12a". <br>
DOI: 10.25405/data.ncl.8859443
title: In situ observation of nanoparticle exsolution from perovskite oxides; from atomic scale mechanistic insight to new nanostructures

description: Understanding and controlling the formation of nanoparticles at the surface of functional oxide supports is critical for tuning activity and stability for catalytic and energy conversion applications. Here we use a latest generation environmental transmission electron microscope to follow the exsolution of individual nanoparticles at the surface of perovskite oxides, with unprecedented spatial and temporal resolution. Qualitative and quantitative analysis of the data reveals the atomic scale processes that underpin the formation of the socketed, strain-inducing interface that confers exsolved particles their unique stability and reactivity. This insight also enabled us to discover that the shape of exsolved particles can be controlled by changing the atmosphere in which exsolution is carried out and additionally, this could also produce intriguing new heterostructures consisting of metal-metal oxide coupled nanoparticles. Our results not only provide insight into the <i>in situ</i> formation of nanoparticles, but also exemplify new dimensions for tailoring nanostructures and nano-interfaces.
DOI: 10.6084/m9.figshare.3761562.v1157
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25387/g3.7887698
title: Supplemental Material for Martins et al., 2019

description: Genotypic and phenotypic data used in the study
DOI: 10.25387/g3.7887698.v1
title: Supplemental Material for Martins et al., 2019

description: Genotypic and phenotypic data used in the study
DOI: 10.6084/m9.figshare.3761562.v1158
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.8203415.v6
title: Bat Recording Manager v8.n

description: This program provides a management system for your library of bat (or other) recordings. It can be flexible in its approach but is primarily designed to work with libraries stored and analysed according to a particular protocol which is described below.<br>The program has four main ‘views’. The default view lists all recording sessions, with details of the currently selected session. Sessions can be added or edited manually or deleted from the database. Similarly individual recordings within the session can be added, edited or deleted.<br>The program assumes that the recordings are of bat calls, and incorporates a reference list of bat species, which can also be modified by the user. This reference list also defines a set of ‘tags’ which can be used when analysing recordings to indicate the presence of each species.<br>Recordings may also be displayed ‘by bat species’. In this case the defined species are listed and the recording sessions and recordings which detected the selected species are shown.<br>An ‘Import’ page allows recording sessions which have been analysed using Audacity to be imported into the database. A single folder containing a set of recordings may be imported or a selection of folders can be imported sequentially.Analyse and Import mode allows interaction with Audacity or Kaleidoscope Light for rapid sequential analysis of recording files.The program also provides report generation in a number of formats, storage of screen capture images during analysis, and the ability to replay portions of recordings at reduced speed or in heterodyne (tuned bat detector) mode.This setup file incorporates .NET 4.7.2 and Audacity 2.3.2 which will be installed automatically if required. The Audacity installation will not affect any pre-existing installations. Kaleidoscope interaction requires that Kaleidoscope is installed to C:<br>v8.0 builds on version 7.3 (see other figshare project) but updates to .NET 4.72 and provides virtualized data access for faster loading in some situations.<br>v8.0.7111 completes the conversion to Visual Studio 2019 and .NET 4.72 with extensive refactoring and code tidying using Resharper. Source code is now available from GitHub.https://github.com/jathalls/BatRecordingManager_v8.n<br>v8.0.7115 Bugfixes for issues with identifying and extracting data from .txt files during import or analyse and import.<br>v8.0.7120 Bugfix causing a crash in 'analyse and import' when the filename doesn't include the date<br>v8.0.7130 Adds the ability to save 'played' snippets to a .wav file, either as slowed down audio file or as a heterodyned audio file.<br>
DOI: 10.6084/m9.figshare.3761562.v1159
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.8868308.v1
title: Soil GHG Fluxes.xlsx

description: In Sub-Saharan Africa, agricultural production has been on the declined mainly due to low soil fertility exacerbated by climate variability as a result of rise in global atmospheric greenhouse gas (GHG) emissions. Several soil fertility amendments have been developed, experimented, adopted and found to improve both yields and general soil health. However, very few studies has been conducted to quantify the contribution of each the soil fertility amendment towards national GHG budget. This creates a huge data gap which may result to uncertainties in the national GHG inventories and may result to poor targeting of mitigation and adaptation measures thus the need to fill it. Also, Kenya as a developing country has been reporting to the UNFCCC on its current status of GHG emissions using default IPCC Tier I emission factors which tend to over-estimate the national greenhouse status in developing world. It is on these premises that we established this empirical study which was laid down in a randomized complete block design with four treatments replicated thrice. The aim of the study was to determine the soil amendment technology that produces the highest maize yields while simultaneous producing the lowest GHG emissions from a maize field in the arid and semiarid zones of central highlands of Kenya. The three fertiliser treatments investigated were i) animal manure, ii) Inorganic fertiliser, iii) a combination of animal manure and inorganic fertilisers applied at 120 kg N ha<sup>-1 </sup>yr<sup>-1 </sup>and iv) a control (No fertiliser application). The GHG data was collected for a whole year (Feb 2017 –Feb 2018) using static GHG chambers and gas chromatography. Also collected alongside, were the auxiliary data including rainfall, soil water content, soil temperature, LAI, inorganic nitrogen and other soil properties.
DOI: 10.6084/m9.figshare.3761562.v1160
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.8159180
title: Microtubules stained fixed HeLa cell

description: A fixed HeLa cell with alpha-tubulin stained, using Star488 secondary antibodies (Abberior, Germany). Sample was imaged with a Nikon A1 confocal microscope, with excitation wavelength 488nm, 60x/1.4 oil immersion objective, 0.4 AU pinhole and GaAsP detector.
DOI: 10.6084/m9.figshare.8158928
title: Vimentin pixel size gradient

description: A fixed cell with intermediate filaments (vimentin) cytoskeleton stained with Star635. The sample was imaged with Abberior Instruments Expert Line STED system, excitation wavelength 633 nm, 100x/1.4 (UPLSAPO100XO) objective. The dataset consists of images with different pixel sizes (29 to 113 nm; dimensions 1389x1389 to 354x354).
DOI: 10.6084/m9.figshare.8158934
title: Tubulin pixel size gradient

description: A fixed cell with microtubulin cytoskeleton stained with Star635. The sample was imaged with Abberior Instruments Expert Line STED system, excitation wavelength 633 nm, 100x/1.4 (UPLSAPO100XO) objective. The dataset consists of images with different pixel sizes (29 to 113 nm; dimensions 1389x1389 to354x354).
DOI: 10.6084/m9.figshare.8159192
title: STED image quality comparison images

description: fixed HeLa cell with tubulin cytoskeleton stained with Star635. The sample was imaged with Leica TCS SP5 STED, 100x/1.4 oil immersion objective (HCX PL APO CS), pinhole 1.0 AU, excitation wavelength 635 nm. The depletion laser wavelength was set to 765 nm and its intensity was varied between 50-100\% -- the same field of view was imaged sequentially with two different detectors. The image size is 700x700 and pixel size 15x15 nm.
DOI: 10.6084/m9.figshare.8159165
title: Pollen stack

description: A sample of pollen, imaged with a Nikon A1 confocal microscope, with excitation wavelength 488 nm, 40x/1.2 water immersion objective and GaAsP detector. Due to custom intermediate optics on the illumination/detection path, the objective was underfilled, to produce an effective NA of approximately 0.5-0.6. Image size is 512x512x181 and voxel size 78x78x250 nm (x,y,z).
DOI: 10.6084/m9.figshare.8159201
title: STED stack of a HeLa cell with tubulin cytoskeleton stained

description: A sample with tubulin cytoskeleton stained with Star-635P (Abberior, Germany). The sample was imaged with Abberior Instruments Expert Line STED system, excitation wavelength 633 nm, depletion wavelength 775 nm, 100x/1.4 (UPLSAPO100XO) objective. The image size (x,y,z) is 1024x972x30 and voxel size 30x30x100 nm.
DOI: 10.6084/m9.figshare.8158919
title: Image of a fluorescent layer

description: Atto647N fluorescent layer imaged with Abberior Instruments Expert Line STED system, excitation wavelength 633nm, 100x/1.4 (UPLSAPO100XO) objective. The image size is 500x500 and pixel size 60x60nm.
DOI: 10.6084/m9.figshare.3761562.v1161
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.21942/uva.8870615
title: Taxonomy of Rejection

description: Annotation manual and corpus of 400 rejections annotated according to the taxonomy presented in the following paper: <br><br>Julian J. Schlöder and Raquel Fernández. <i>How</i> to Reject <i>What</i> in Dialogue, in <i>Proceedings of the 23rd Workshop on the Semantics and Pragmatics of Dialogue</i> (SemDial 2019 - LondonLogue). London, 2019.