cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.31286939
title: Additional file 2 of IbinA and IbinB regulate the Toll pathway-mediated immune response in Drosophila melanogaster

description: Additional file 2. Tables S1–S8. Table S1. RNA sequencing fold change comparisons. Table S2. Genes upregulated with L.m. infection in wildtype (w1118). Table S3. Genes downregulated with L.m. infection in wildtype (w1118). Table S4. Gene ontology hits from the Table S2 list. Table S5. Gene ontology hits from the Table S3 list. Table S6. Differentially expressed genes in uninfected single mutants vs w1118 controls, and GO enrichment from these lists. Table S7.Average normalized read counts with the standard deviation of genes shown in Fig. 6, for all (uninfected and infected) samples. Table S8. RT-qPCR primers used in this study.
DOI: 10.6084/m9.figshare.31286939.v1
title: Additional file 2 of IbinA and IbinB regulate the Toll pathway-mediated immune response in Drosophila melanogaster

description: Additional file 2. Tables S1–S8. Table S1. RNA sequencing fold change comparisons. Table S2. Genes upregulated with L.m. infection in wildtype (w1118). Table S3. Genes downregulated with L.m. infection in wildtype (w1118). Table S4. Gene ontology hits from the Table S2 list. Table S5. Gene ontology hits from the Table S3 list. Table S6. Differentially expressed genes in uninfected single mutants vs w1118 controls, and GO enrichment from these lists. Table S7.Average normalized read counts with the standard deviation of genes shown in Fig. 6, for all (uninfected and infected) samples. Table S8. RT-qPCR primers used in this study.
DOI: 10.21227/9jf2-xp83
title: "HV\u2013AV interaction trajectory dataset - six negotiation-required scenarios"

description: "HV\u2013AV interaction trajectory dataset is a simulator-based interaction dataset for studying human\u2013automated vehicle (HV\u2013AV) negotiation in mixed traffic. It contains competitive right-of-way interactions across six scenarios (S1\u2013S6) under conservative\/aggressive AV settings, collected from 54 participants over two rounds (648 total trials). The dataset includes synchronized ego\/AV kinematics, scenario-condition tags, and participant attributes (e.g., age, gender, driving experience, trust in AV, DBQ), supporting reward learning, behavior modeling, and early outcome prediction."
DOI: 10.15468/dl.rxkagd
title: Occurrence Download

description: A dataset containing 265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schoenoplectus corymbosus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 265 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017874-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31286954
title: Additional file 4 of Triglyceride-glucose body mass index and risk of incident venous thromboembolism: a prospective cohort study from the UK Biobank

description: Supplementary material 4.
DOI: 10.6084/m9.figshare.31286954.v1
title: Additional file 4 of Triglyceride-glucose body mass index and risk of incident venous thromboembolism: a prospective cohort study from the UK Biobank

description: Supplementary material 4.
DOI: 10.15468/dl.yx36xy
title: Occurrence Download

description: A dataset containing 6810 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chenopodiastrum hybridum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2019"
 ]
}

 The dataset includes 6810 records from 292 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017873-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18513217
title: A Representative Subset for Cattle Identification via Gait and Coat-pattern

description: This dataset is a representative subset (1.3 GB) of the cow gait and coat-pattern data used in our research. It is provided to support the reproducibility of the proposed multimodal identification framework.

Data Contents:

Segmented RGB Images: Specifically prepared for the coat-pattern recognition branch to extract texture features.

Binary Silhouette Sequences: Specifically prepared for the gait-based identification branch to analyze temporal motion patterns.

Organization: Images are organized by animal ID, ensuring paired alignment for multimodal fusion training and testing.

Usage: These samples allow for the evaluation of model performance as described in the manuscript.
DOI: 10.5281/zenodo.18513218
title: A Representative Subset for Cattle Identification via Gait and Coat-pattern

description: This dataset is a representative subset (1.3 GB) of the cow gait and coat-pattern data used in our research. It is provided to support the reproducibility of the proposed multimodal identification framework.

Data Contents:

Segmented RGB Images: Specifically prepared for the coat-pattern recognition branch to extract texture features.

Binary Silhouette Sequences: Specifically prepared for the gait-based identification branch to analyze temporal motion patterns.

Organization: Images are organized by animal ID, ensuring paired alignment for multimodal fusion training and testing.

Usage: These samples allow for the evaluation of model performance as described in the manuscript.
DOI: 10.6084/m9.figshare.31286985
title: Additional file 4 of Dietary β-carotene improves the ovary development and antioxidant capacity of replacement gilts

description: Additional file 4. List of differential metabolites between β-C and control groups.
DOI: 10.6084/m9.figshare.31286985.v1
title: Additional file 4 of Dietary β-carotene improves the ovary development and antioxidant capacity of replacement gilts

description: Additional file 4. List of differential metabolites between β-C and control groups.
DOI: 10.6084/m9.figshare.31286986
title: Supplementary Material for: Presumed Capsular-Bag–Origin Endophthalmitis Following Anterior Vitrectomy for Posterior Capsule Opacification in a Patient with Proliferative Diabetic Retinopathy: A Case Report

description: Purpose: To report a rare case of presumed postoperative endophthalmitis after anterior vitrectomy (AVit) for dense posterior capsule opacification (PCO) in a patient with proliferative diabetic retinopathy (PDR).
Observations: A 52-year-old woman with long-standing diabetes and prior pan-retinal photocoagulation and pars plana vitrectomy with phacoemulsification and intraocular lens implantation developed visually significant, fibrotic PCO in the right eye. Slit-lamp examination revealed dense, partially liquefied, milky PCO between the posterior capsule and the intraocular lens. Because the opacity was judged unsuitable for Nd:YAG laser posterior capsulotomy, a 23-gauge pars plana AVit with surgical posterior capsulotomy was performed. On postoperative day 4, the patient presented with ocular pain, 2+ anterior chamber cells, hypopyon, and dense vitreous opacities, with complete obscuration of the fundus, consistent with presumed postoperative endophthalmitis. Urgent anterior chamber lavage and repeat pars plana vitrectomy with intravitreal injection of vancomycin and ceftazidime led to rapid resolution of hypopyon, vitreous opacities, and pain, although vitreous cultures were negative. The clinical course—onset shortly after surgical manipulation of a chronically opacified capsular bag, low-grade fibrin reaction, and excellent visual recovery—suggested a low-virulence, capsular-bag–origin infection unmasked by AVit in a metabolically compromised eye (day-of-surgery glucose 259 mg/dL, HbA1c 7.2%). At 7-year follow-up, best-corrected visual acuity was 20/16 with a continuous ellipsoid zone on optical coherence tomography and no recurrent inflammation. Conclusions and Importance: This case illustrates that presumed capsular-bag–origin endophthalmitis can occur after AVit for dense PCO in high-risk diabetic eyes, even when cultures are negative. The findings underscore the importance of careful selection between Nd:YAG laser and surgical posterior capsulotomy, strict perioperative glycemic control, meticulous aseptic technique, and prompt surgical re-intervention with intravitreal antibiotics. Early recognition and management may allow excellent long-term anatomic and visual outcomes.
DOI: 10.6084/m9.figshare.31286986.v1
title: Supplementary Material for: Presumed Capsular-Bag–Origin Endophthalmitis Following Anterior Vitrectomy for Posterior Capsule Opacification in a Patient with Proliferative Diabetic Retinopathy: A Case Report

description: Purpose: To report a rare case of presumed postoperative endophthalmitis after anterior vitrectomy (AVit) for dense posterior capsule opacification (PCO) in a patient with proliferative diabetic retinopathy (PDR).
Observations: A 52-year-old woman with long-standing diabetes and prior pan-retinal photocoagulation and pars plana vitrectomy with phacoemulsification and intraocular lens implantation developed visually significant, fibrotic PCO in the right eye. Slit-lamp examination revealed dense, partially liquefied, milky PCO between the posterior capsule and the intraocular lens. Because the opacity was judged unsuitable for Nd:YAG laser posterior capsulotomy, a 23-gauge pars plana AVit with surgical posterior capsulotomy was performed. On postoperative day 4, the patient presented with ocular pain, 2+ anterior chamber cells, hypopyon, and dense vitreous opacities, with complete obscuration of the fundus, consistent with presumed postoperative endophthalmitis. Urgent anterior chamber lavage and repeat pars plana vitrectomy with intravitreal injection of vancomycin and ceftazidime led to rapid resolution of hypopyon, vitreous opacities, and pain, although vitreous cultures were negative. The clinical course—onset shortly after surgical manipulation of a chronically opacified capsular bag, low-grade fibrin reaction, and excellent visual recovery—suggested a low-virulence, capsular-bag–origin infection unmasked by AVit in a metabolically compromised eye (day-of-surgery glucose 259 mg/dL, HbA1c 7.2%). At 7-year follow-up, best-corrected visual acuity was 20/16 with a continuous ellipsoid zone on optical coherence tomography and no recurrent inflammation. Conclusions and Importance: This case illustrates that presumed capsular-bag–origin endophthalmitis can occur after AVit for dense PCO in high-risk diabetic eyes, even when cultures are negative. The findings underscore the importance of careful selection between Nd:YAG laser and surgical posterior capsulotomy, strict perioperative glycemic control, meticulous aseptic technique, and prompt surgical re-intervention with intravitreal antibiotics. Early recognition and management may allow excellent long-term anatomic and visual outcomes.
DOI: 10.6084/m9.figshare.31286989
title: Supplementary Material for: Outcomes of Fecal Microbiota Transfer in Patients with Recurrent Clostridioides difficile Infection: Real-World Data from a Single Center in Switzerland

description: Introduction: Clostridioides difficile is the most frequently reported healthcare-associated infection with around 125’000 occurrences and 3’700 deaths annually in Europe. Recurrence rates are about 20% and risk factors include age &gt; 65 years and inflammatory bowel disease (IBD). Fecal Microbiota Transfer (FMT) has emerged as a highly effective treatment for recurrent C. difficile infection (rCDI), being successful in more than 90% of patients. This retrospective single-center study aimed to evaluate the effectiveness and safety of FMT in patients with rCDI the University Hospital Zurich.
Methods: Between 2012 and 2022, 84 patients underwent FMT for rCDI at our center, of which 83 were included in the final analysis. The median patient age was 71 years (22-97 years), and the majority of patients were female (67.4%). All patients had received multiple prior courses of antibiotic treatment for C. difficile infection.
Results: The success rate following a single FMT was 92.8%, increasing to 97.6% with repeated procedures. Those rates were comparable in the IBD subgroup. FMT was well tolerated. Mild adverse events were reported in 14.5% of patients, most commonly reported adverse event being ongoing IBD activity (41.7%), followed by diarrhea (25%) and abdominal pain (25%). Serious adverse events occurred in 3.6% of patients mainly related to underlying conditions. 
Conclusion: Our study confirms that FMT is a highly effective and well-tolerated treatment for rCDI, even in older patients with comorbidities. Importantly, FMT was successfully implemented without the use of a national stool bank, instead relying on locally processed related donor stool, highlighting its feasibility in resource-limited settings.
DOI: 10.6084/m9.figshare.31286989.v1
title: Supplementary Material for: Outcomes of Fecal Microbiota Transfer in Patients with Recurrent Clostridioides difficile Infection: Real-World Data from a Single Center in Switzerland

description: Introduction: Clostridioides difficile is the most frequently reported healthcare-associated infection with around 125’000 occurrences and 3’700 deaths annually in Europe. Recurrence rates are about 20% and risk factors include age &gt; 65 years and inflammatory bowel disease (IBD). Fecal Microbiota Transfer (FMT) has emerged as a highly effective treatment for recurrent C. difficile infection (rCDI), being successful in more than 90% of patients. This retrospective single-center study aimed to evaluate the effectiveness and safety of FMT in patients with rCDI the University Hospital Zurich.
Methods: Between 2012 and 2022, 84 patients underwent FMT for rCDI at our center, of which 83 were included in the final analysis. The median patient age was 71 years (22-97 years), and the majority of patients were female (67.4%). All patients had received multiple prior courses of antibiotic treatment for C. difficile infection.
Results: The success rate following a single FMT was 92.8%, increasing to 97.6% with repeated procedures. Those rates were comparable in the IBD subgroup. FMT was well tolerated. Mild adverse events were reported in 14.5% of patients, most commonly reported adverse event being ongoing IBD activity (41.7%), followed by diarrhea (25%) and abdominal pain (25%). Serious adverse events occurred in 3.6% of patients mainly related to underlying conditions. 
Conclusion: Our study confirms that FMT is a highly effective and well-tolerated treatment for rCDI, even in older patients with comorbidities. Importantly, FMT was successfully implemented without the use of a national stool bank, instead relying on locally processed related donor stool, highlighting its feasibility in resource-limited settings.
DOI: 10.6084/m9.figshare.31286975
title: Additional file 1 of Establishment of a transdermal infection model with Leishmania amazonensis

description: Additional file 1: Video S1. Transdermal infection demonstration. Video demonstration of the transdermal infection model in BALB/c mouse ears.
DOI: 10.6084/m9.figshare.31286975.v1
title: Additional file 1 of Establishment of a transdermal infection model with Leishmania amazonensis

description: Additional file 1: Video S1. Transdermal infection demonstration. Video demonstration of the transdermal infection model in BALB/c mouse ears.
DOI: 10.6084/m9.figshare.31286995
title: Supplementary Material for: Masson’s Tumor Mimicking Mesenchymal Neoplasia: Case Report of Intravascular Papillary Endothelial Hyperplasia in the Deltoid Muscle.

description: Introduction: Intravascular papillary endothelial hyperplasia (IPEH), or Masson’s tumor, is a benign endothelial proliferation that typically arises in soft tissues and lacks cytological atypia. It is often identified during the exclusion of malignant vascular neoplasms, particularly angiosarcoma. Deltoid involvement is exceptionally rare and usually associated with underlying vascular malformations.
Case Presentation: A 19-year-old woman presented with a painless, progressively enlarging swelling in the right shoulder, without a history of trauma. Magnetic resonance imaging (MRI) revealed a well-defined intramuscular lesion suggestive of mesenchymal neoplasia. A complete surgical excision was performed. Histopathological analysis revealed a vascular lesion composed of multiple papillary structures lined with bland endothelial cells, consistent with IPEH. No atypia or malignancy was identified. The patient remained recurrence-free at 12-month follow-up.
Conclusion: Masson’s tumor invariably requires surgical excision to establish a definitive diagnosis and to exclude malignant vascular neoplasms, particularly angiosarcoma. This case highlights the diagnostic challenges posed by IPEH in atypical locations and underscores the importance of histopathological confirmation. A review of previously reported cases confirmed an indolent course and a low recurrence rate. Early detection of this tumor in young patients is essential to prevent unnecessary aggressive interventions.
DOI: 10.6084/m9.figshare.31286995.v1
title: Supplementary Material for: Masson’s Tumor Mimicking Mesenchymal Neoplasia: Case Report of Intravascular Papillary Endothelial Hyperplasia in the Deltoid Muscle.

description: Introduction: Intravascular papillary endothelial hyperplasia (IPEH), or Masson’s tumor, is a benign endothelial proliferation that typically arises in soft tissues and lacks cytological atypia. It is often identified during the exclusion of malignant vascular neoplasms, particularly angiosarcoma. Deltoid involvement is exceptionally rare and usually associated with underlying vascular malformations.
Case Presentation: A 19-year-old woman presented with a painless, progressively enlarging swelling in the right shoulder, without a history of trauma. Magnetic resonance imaging (MRI) revealed a well-defined intramuscular lesion suggestive of mesenchymal neoplasia. A complete surgical excision was performed. Histopathological analysis revealed a vascular lesion composed of multiple papillary structures lined with bland endothelial cells, consistent with IPEH. No atypia or malignancy was identified. The patient remained recurrence-free at 12-month follow-up.
Conclusion: Masson’s tumor invariably requires surgical excision to establish a definitive diagnosis and to exclude malignant vascular neoplasms, particularly angiosarcoma. This case highlights the diagnostic challenges posed by IPEH in atypical locations and underscores the importance of histopathological confirmation. A review of previously reported cases confirmed an indolent course and a low recurrence rate. Early detection of this tumor in young patients is essential to prevent unnecessary aggressive interventions.
DOI: 10.6084/m9.figshare.31287001
title: Supplementary Material for: Thiamine Deficiency in a Patient with Gastric Adenocarcinoma: a case report

description: Introduction
Thiamine deficiency (TD), arising from inadequate intake or increased metabolic demand, is an underrecognized complication in oncology. While commonly associated with Wernicke encephalopathy (WE), its subclinical form often precedes overt neurological symptoms. Gastric cancer (GC) patients are at high risk due to malnutrition and cachexia. This case highlights the critical importance of proactive TD screening in malnourished cancer patients to prevent irreversible neurological sequelae.
Case Presentation
A 58-year-old non-alcoholic female with a smoking history presented with hematemesis. Endoscopy and biopsy confirmed gastric adenocarcinoma (signet-ring cell type). She initially declined treatment. One month later, she returned with rapid clinical deterioration: 17 kg weight loss and profound anorexia, but no neurological deficits. Informed by a family history of malignancy with neuropsychiatric symptoms, serum thiamine was tested and revealed severe deficiency (21 ng/mL; normal 30–70). Intravenous thiamine replacement was initiated.
Conclusion
This case underscores that overt neurological signs are not a prerequisite for significant TD in high-risk oncology patients. A low threshold for screening—based on nutritional status and rapid weight loss—is essential, particularly in resource-limited settings where advanced diagnostic tools are scarce. Proactive thiamine replacement can prevent the development of full-blown WE, potentially improving a patient's candidacy for and tolerance of anticancer therapies. Integrating nutritional deficiency screening into standard oncological workup is a simple, cost-effective measure to reduce morbidity.
DOI: 10.6084/m9.figshare.31287001.v1
title: Supplementary Material for: Thiamine Deficiency in a Patient with Gastric Adenocarcinoma: a case report

description: Introduction
Thiamine deficiency (TD), arising from inadequate intake or increased metabolic demand, is an underrecognized complication in oncology. While commonly associated with Wernicke encephalopathy (WE), its subclinical form often precedes overt neurological symptoms. Gastric cancer (GC) patients are at high risk due to malnutrition and cachexia. This case highlights the critical importance of proactive TD screening in malnourished cancer patients to prevent irreversible neurological sequelae.
Case Presentation
A 58-year-old non-alcoholic female with a smoking history presented with hematemesis. Endoscopy and biopsy confirmed gastric adenocarcinoma (signet-ring cell type). She initially declined treatment. One month later, she returned with rapid clinical deterioration: 17 kg weight loss and profound anorexia, but no neurological deficits. Informed by a family history of malignancy with neuropsychiatric symptoms, serum thiamine was tested and revealed severe deficiency (21 ng/mL; normal 30–70). Intravenous thiamine replacement was initiated.
Conclusion
This case underscores that overt neurological signs are not a prerequisite for significant TD in high-risk oncology patients. A low threshold for screening—based on nutritional status and rapid weight loss—is essential, particularly in resource-limited settings where advanced diagnostic tools are scarce. Proactive thiamine replacement can prevent the development of full-blown WE, potentially improving a patient's candidacy for and tolerance of anticancer therapies. Integrating nutritional deficiency screening into standard oncological workup is a simple, cost-effective measure to reduce morbidity.