cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/cc77zbr
title: CCDC 216204: Experimental Crystal Structure Determination

description: Related Article: Wen-Jie Lu, Lin-Ping Zhang, Hoi-Shan Chan, Tze-Lock Chan, T.C.W.Mak|2004|Polyhedron|23|1089|doi:10.1016/j.poly.2004.01.008
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc77zcs
title: CCDC 216205: Experimental Crystal Structure Determination

description: Related Article: Wen-Jie Lu, Lin-Ping Zhang, Hoi-Shan Chan, Tze-Lock Chan, T.C.W.Mak|2004|Polyhedron|23|1089|doi:10.1016/j.poly.2004.01.008
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc77zdt
title: CCDC 216206: Experimental Crystal Structure Determination

description: Related Article: Wen-Jie Lu, Lin-Ping Zhang, Hoi-Shan Chan, Tze-Lock Chan, T.C.W.Mak|2004|Polyhedron|23|1089|doi:10.1016/j.poly.2004.01.008
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc77zfv
title: CCDC 216207: Experimental Crystal Structure Determination

description: Related Article: Wen-Jie Lu, Lin-Ping Zhang, Hoi-Shan Chan, Tze-Lock Chan, T.C.W.Mak|2004|Polyhedron|23|1089|doi:10.1016/j.poly.2004.01.008
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7tj7s
title: CCDC 233065: Experimental Crystal Structure Determination

description: Related Article: Y.Inoue, T.Kanbara, T.Yamamoto|2004|Tetrahedron Lett.|45|4603|doi:10.1016/j.tetlet.2004.04.114
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7tj8t
title: CCDC 233066: Experimental Crystal Structure Determination

description: Related Article: Y.Inoue, T.Kanbara, T.Yamamoto|2004|Tetrahedron Lett.|45|4603|doi:10.1016/j.tetlet.2004.04.114
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7tj9v
title: CCDC 233067: Experimental Crystal Structure Determination

description: Related Article: Y.Inoue, T.Kanbara, T.Yamamoto|2004|Tetrahedron Lett.|45|4603|doi:10.1016/j.tetlet.2004.04.114
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7tjbw
title: CCDC 233068: Experimental Crystal Structure Determination

description: Related Article: Y.Inoue, T.Kanbara, T.Yamamoto|2004|Tetrahedron Lett.|45|4603|doi:10.1016/j.tetlet.2004.04.114
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.6pumwh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Monoplacophora)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-100 -50,-90 -50,-90 -40,-100 -40,-100 -50))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019291-251009101135966/datasets/export for details.
DOI: 10.5517/cc78dgb
title: CCDC 216611: Experimental Crystal Structure Determination

description: Related Article: Seigi Suh, Jun Guan, L.A.Miinea, J.-S.M.Lehn, D.M.Hoffman|2004|Chem.Mater.|16|1667|doi:10.1021/cm035392y
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78dhc
title: CCDC 216612: Experimental Crystal Structure Determination

description: Related Article: Seigi Suh, Jun Guan, L.A.Miinea, J.-S.M.Lehn, D.M.Hoffman|2004|Chem.Mater.|16|1667|doi:10.1021/cm035392y
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc78djd
title: CCDC 216613: Experimental Crystal Structure Determination

description: Related Article: Seigi Suh, Jun Guan, L.A.Miinea, J.-S.M.Lehn, D.M.Hoffman|2004|Chem.Mater.|16|1667|doi:10.1021/cm035392y
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.fcbx44
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Spain, Portugal, France)",
 "OccurrenceStatus is Present",
 "TaxonKey is Anthophora robusta"
 ]
}

 The dataset includes 64 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086427-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d5dcuc
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hymenoscyphus fraxineus",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 186 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086428-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15324028
title: Accessible and thorough magnetic field mapping of TEMs using a commercial Hall-sensor and TEM automation for in situ magnetic experiments

description: These scripts and datasets accompany the article Accessible and thorough magnetic field mapping of TEMs using a commercial Hall-sensor and TEM automation for in situ magnetic experiments by Sivert Dagenborg et. al in Micron (doi: 10.1016/j.micron.2025.103877). See this paper for the full description of how the measurements were carried out.

The scripts and data are divided into three parts: data acquisition, sensor calibration and TEM measurement plotting. These rely on common Python packages such as numpy (2.1.3), matplotlib (3.10.0), pandas (2.3.1) and scipy (1.15.1). The versions in parentheses are the ones the sensor calibration and TEM measurements plotting were performed with.

Data acquisition

The data acquisition scripts are the scripts that were run during sensor calibration and TEM measurements.  These are found in the acquisition_scripts.zip archive. These are not thoroughly tested or robust. Instead, they re provided as-is with no guarantees. Use these at your own risk and discretion.

The scripts use the Python package pyMeasure (PyMeasure Developers. PyMeasure (Version 0.15.0) [Computer software]. doi: 10.5281/zenodo.595633) to control and save the Keithley 2450 Source Measure Unit measurements. In the TEM measurements, TEM automation is used when available through the package Python package Instamatic (Smeets, S., Wang, B., Hogenbirk, E., Rainer, D., & Tchoń, D. M. (2021). Instamatic (Version 2.1.1) [Computer software]. doi: 10.5281/zenodo.1090388).

Sensor calibration

This is done by running the Python notebook sensor_calibration.ipynb. It takes the calibration measurements from the measurements.zip folder and calibrates the Hall-sensor response to the applied magnetic field.

TEM measurement plotting

This is done by running the notebook plot_TEM_measurements.ipynb. It processes and plots the measurement data in measurements.zip to the format seen in the article. A substantial amount of unused data is also present.

Licenses

The contents of the acquisition_scripts.zip folder is under the BSD 3-Clause "New" or "Revised" License.

All other contents of this repository is under the CC0 license.

Additional funding

In addition to the funding sources attached, Kristian Tveitstøl acknowledges funding from Horizon Europe (grant number 101094299).
DOI: 10.5281/zenodo.15324029
title: Accessible and thorough magnetic field mapping of TEMs using a commercial Hall-sensor and TEM automation for in situ magnetic experiments

description: These scripts and datasets accompany the article Accessible and thorough magnetic field mapping of TEMs using a commercial Hall-sensor and TEM automation for in situ magnetic experiments by Sivert Dagenborg et. al in Micron (doi: 10.1016/j.micron.2025.103877). See this paper for the full description of how the measurements were carried out.

The scripts and data are divided into three parts: data acquisition, sensor calibration and TEM measurement plotting. These rely on common Python packages such as numpy (2.1.3), matplotlib (3.10.0), pandas (2.3.1) and scipy (1.15.1). The versions in parentheses are the ones the sensor calibration and TEM measurements plotting were performed with.

Data acquisition

The data acquisition scripts are the scripts that were run during sensor calibration and TEM measurements.  These are found in the acquisition_scripts.zip archive. These are not thoroughly tested or robust. Instead, they re provided as-is with no guarantees. Use these at your own risk and discretion.

The scripts use the Python package pyMeasure (PyMeasure Developers. PyMeasure (Version 0.15.0) [Computer software]. doi: 10.5281/zenodo.595633) to control and save the Keithley 2450 Source Measure Unit measurements. In the TEM measurements, TEM automation is used when available through the package Python package Instamatic (Smeets, S., Wang, B., Hogenbirk, E., Rainer, D., & Tchoń, D. M. (2021). Instamatic (Version 2.1.1) [Computer software]. doi: 10.5281/zenodo.1090388).

Sensor calibration

This is done by running the Python notebook sensor_calibration.ipynb. It takes the calibration measurements from the measurements.zip folder and calibrates the Hall-sensor response to the applied magnetic field.

TEM measurement plotting

This is done by running the notebook plot_TEM_measurements.ipynb. It processes and plots the measurement data in measurements.zip to the format seen in the article. A substantial amount of unused data is also present.

Licenses

The contents of the acquisition_scripts.zip folder is under the BSD 3-Clause "New" or "Revised" License.

All other contents of this repository is under the CC0 license.

Additional funding

In addition to the funding sources attached, Kristian Tveitstøl acknowledges funding from Horizon Europe (grant number 101094299).
DOI: 10.15468/dl.an17pz
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010220-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kazoyx
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081309-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pnnz2j
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus ulmifolis Schott"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0269369-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywkvbx
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010238-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ikpdha
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004075-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.javune
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002369-180925134338326/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kqondh
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010253-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ykvl1t
title: Occurrence Download

description: A dataset containing 1579103578 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 1579103578 records from 18073 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005533-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/5ba-2rp-f37
title: Operculina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nvk-6kq-ql8
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e3y-mnd-nex
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pq7-t5s-dvd
title: Fagus L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vbw-rxp-s3e
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h6j-92w-n8t
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jht-38z-w9z
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/aaw-e5w-jgs
title: †Naiadites Dawson, 1860

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s54-ytg-e16
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sc6-gtt-7gs
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lyb-n8n-6st
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sj0-x0b-ybk
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2bz-ze7-jn1
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3be-la2-x4c
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4ps-x09-7vw
title: †Anthracosia regularis (Trueman, 1929)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wpn-60f-sl7
title: Orthiopteris Copel.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zxa-jps-xwa
title: Ulmus glabra Huds.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dy9-eza-vhe
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tw4-wah-c9m
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9qc-tcw-mst
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xxp-q7l-52s
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.6dge2j
title: Occurrence Download

description: A dataset containing 3057 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sorbus scopulina)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3057 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020437-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/gnw-he7-r0x
title: Ulmus glabra Huds.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2dk-dqz-5h9
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ym5-5da-kh4
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j3e-00m-zaq
title: Quercus L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nsa-f0j-ntp
title: Operculinella Yabe, 1918

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.13240270
title: Test data sets: Amoebozoa Test

description: The Encyclopedia of Life (EOL, eol.org) aggregates biodiversity information from more than 400 sources and provides access to the data through taxon pages, visual query and application programming interfaces. Scientific names are essential elements of the data integration infrastructure, but their shortcomings as key identifiers are well documented (Patterson et al., 2016). Complex automated workflows and continuous manual curation are required to address idiosyncrasies of source taxonomies, variation in data quality, and conflicting taxonomic opinions. 

To achieve a harmonized taxonomic view of EOL content, names from data sources are mapped to a dynamic reference hierarchy ([see current version here](https://opendata.eol.org/dataset/tram-807-808-809-810-dh-v1-1/resource/00adb47b-57ed-4f6b-8f66-83bfdb5120e8)) using an algorithm that leverages canonical name strings, hierarchical information (ancestry, descendants), taxonomic ranks, synonym data, and author strings. Names that cannot be associated with a reference taxon are still accessible, but their unmapped status excludes them and any associated content from certain core EOL functions.

For more information about the EOL taxonomy, see [EOL Dynamic Hierarchy](
https://eol.org/docs/eol-dynamic-hierarchy)