cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/r8b5mcrj6j
title: Supplementary Material: Use of fast realistic simulations on GPU to extract CAD models from microtomographic data in the presence of strong CT artefacts

description: Supporting material for our paper published by Elsevier in Precision Engineering, see https://doi.org/10.1016/j.precisioneng.2021.10.014 for the paper

To run our code, you must install:

1. Python
2. A C++ compiler with CMake
3. gVirtualXRay (code provided)

Python dependencies:
1. numpy
2. pandas
3. imageio
4. scikit-image
5. sklearn
6. scipy
7. SimpleITK
8. OpenCV
9. cma
10. tifffile import
11. tigre/tomopy (optional)

Contents

1. code:
 -  gVirtualXRay-1.1.5-Source.zip: Source code of gVirtualXRay
 - tutorial.py: the Python code of the registration pipeline in 2D
 - lsf.py: Detector response
 - utils.py: needed by pseudo3d.py
 - pseudo3d.py: Pseudo 3D registration 
2. data: contains the input sinograms
 - proj-33keV.tif: projections after flatfield correction. Projections are of 1024 pixels. Pixel spacing: 1.9um. 900 angles over 180 degrees. Primary energy : 33 keV. Source-object distance: 145m. Object-detector distance: 80mm.
 - proj-0000-80keV.tif: projections of the first slice after flatfield correction. Projections are of 2702 pixels. Pixel spacing: 1.22um. 1750 angles over 360 degrees. Primary energy: 80 keV.  Source-object distance: 92m. Object-detector distance: 270mm.
 - proj-1023-80keV.tif: projections of the last slice after flatfield correction. 
3. Jupyter_Notebooks: contains our tutorial and some videos
 - From_CT_acquisition_to_CAD_models.ipynb: Jupyter Notebook in Python
 - From_CT_acquisition_to_CAD_models.pdf: Jupyter Notebook as a PDF file
 - cube_registration.mp4: successive best results during the optimisation of the matrix properties
 - fibre1_registration.mp4: successive best results during the optimisation of the fibre and core radii (before recentring)
 - fibre3_registration.mp4: successive best results during the optimisation of the fibre and core radii (after recentring)
 - spectrum_registration.mp4: successive best results during the optimisation of the beam spectrum
 - laplacian1_registration.mp4: successive best results during the optimisation of the phase contrast and of the fibre and core radii 
 - laplacian2_registration.mp4: successive best results during the optimisation of the phase contrast and the response of the detector
4. results: registered images
 - output33keV: 2D registration
 - output80keV: pseudo-3D registration
5. user_study:
 - online-form.pdf: the online form
 - responses.csv: answers from volunteers
6. visualisations: contains our interactive parallel coordinate plots and a video showing how to use them
 - how_to_use_visualisations.mp4: video showing how we used it to analyse the data
 - parallel_coordinates_all_data.html: interactive parallel coordinate plots of the fibre and core raii, and the linear attenuation coefficients of the cores, fibres and matrix
 - parallel_coordinates-ZNCC.htmll: interactive parallel coordinate plots of the successive ZNCC values during a registration
DOI: 10.17632/jp4ymf2vjw
title: Mexican Sign Language's Dactylology and Ten First Numbers -Raw videos. From person #4 to #7

description: The following data set has 10 raw recordings of 3 people each (People were anonymously classified from person 4 to 7) performing Sign Language and the First Ten Numbers of Mexican Sign Language. It is worth mentioning that, for each person, 5 recordings were made with the right hand and 5 with the left hand.
DOI: 10.17632/js8szv4gmz
title: LINF_170009100

description: histone H2A variant Z (H2A.Z) Leishmania infantum (strain JPCM5)
DOI: 10.17632/ntm9zj66g2
title: Diagnostico de la relacion de un grupo de jovenes sordos en la ciudad de Cali, Colombia, con la proucción de materiales audiovisuales.

description: Trabajo de grado para optar el titulo de comunicadora social.
DOI: 10.17632/rn7g2tt4vm
title: Observations of the conchological structure of Santos Beach (Brazil) during the summer of 2020

description: Raw datasets of the conchological structure composed of fragmented and whole empty shells, observed during the summer of 2020 in Santos Beach (Brazil), according to sector (damp or wet), tide (neap or spring), transect (sampling structure), zone (depostion or erosion) and field trip (date of collection event). DATASET 1: totais.txt - abundances in weight and in number within each sampling unit (rows), regardless of species. DATASET 2: comm.txt - abundances in number within each sampling (rows), where each column is a different species. Not all observations are independent, since one should take into account the nesting of the sampling design: transect within zone within fieldtrip (variable 'saida' in the data files).
DOI: 10.17632/rss8dwz694
title: Data Depository

description: The following data include ENVI-met simulation files, the resulting data (in excel sheets), as well as the visualization of such results (jpg).
DOI: 10.17632/z4vn8jkj8w
title: Raw Data - B3 Stock Prices October 2012/2016

description: B3 stock prices raw data from october 2012 to october 2016. Dividend effects on prices removed since 1996. Source: Economatica.
DOI: 10.17632/sxy5xknpm5
title: Investigating the mechanism of action of aggregation-inducing antimicrobial Pept-ins

description: Raw microarray data, the data set is related to figure 4.
DOI: 10.17632/rzzpcwgkx5
title: 3d Metallocene Anion Data

description: Physical and computational characterisation data for an isostructural series of metallocene anions.
DOI: 10.17632/kksww9xd6f
title: Political bias in resource allocation during the first wave of the pandemic in Chile

description: To determine the relationship between the distribution of aid from the central to the local level, we use panel data analysis and fixed effects for the country's 345 communes and for the months of March to September. The commune fixed effect controls for those commune-specific factors that are fixed over time, and the month fixed effect controls for those factors that vary over time but are common to all communes. In each of the models the dependent variable is the logarithm of current transfers at the per capita level, while the independent variables are divided into three dimensions, firstly, there are the political variables such as political party of the president and municipal victory margin, the first is a binary variable that is 1 when the mayor is of the same party as the President of the Republic and 0 otherwise. The second political variable corresponds to the percentage difference in votes between the elected mayor and the second candidate to obtain the highest number of votes, i.e. the margin of victory, which allows us to understand the degree of electoral competition in the territory. A second dimension is the variables associated with the pandemic, such as the number of days the municipality was under quarantine, the percentage of the population in the municipality below the poverty line, and the density variable, which is the population divided by the surface area of the municipality. While poverty is associated with the local socio-economic context and density is a good proxy for the shape and structure of the territory (OECD, 2013 2014), allowing to distinguish between metropolitan (centre or periphery), urban or predominantly rural areas. Finally, control variables associated with municipal financing were incorporated in the models, such as contributions from the Municipal Common Fund (FCM), Capital Contributions and Autonomous Income of the municipalities, the first indicating the level of vulnerability of the municipalities, since it is a formula-based transfer that is related to local vulnerability, the greater the dependence on the FCM the greater the vulnerability of the municipality. The second variable corresponds to transfers for the development of projects, mainly in the area of infrastructure and equipment; in order to obtain this transfer, the project must be technically evaluated by the National Investment System. Thirdly, there is autonomous income, 70 percent of which corresponds to income from land tax, economic activities and automobile circulation permits, so this variable allows capturing the wealth of the municipalities.
DOI: 10.17632/kw57jvts9m
title: Mejoramiento del rendimiento académico mediante el uso de un programa de nivelación

description: Lo que se quiere demostrar es que aplicando un programa de nivelación académica, en este caso sobre la Transformada Z, se puede lograr la mejora del rendimiento académico de los estudiantes de una asignatura, en este caso, Procesamiento Digital de Señales. Los datos adquiridos se basaron en una prueba de conocimientos y se aplico antes y despúes del programa de nivelación. A partir de estos, se realizo un analisis estadístico que finalmente comprueba la hipótesis de investigación.
DOI: 10.17632/5p7k3hkfhb
title: LINF_310037700

description: nucleoporin NUP62
Leishmania infantum (strain JPCM5)
DOI: 10.17632/rz98xx625v
title: LINF_300022900

description: queuine tRNA-ribosyltransferase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/2y8pbrv6bp
title: Massage Spa Vaughan

description: Sun Spa & Wellness is one of the best spa destinations for all those who are looking for Massage Spa in Vaughan. We offer various massage techniques performed by the professional therapists to help you in releasing all your body pain and stress. The therapies you can enjoy at our spa are Hot Stone Massage, Deep Tissue Massage, Aromatherapy Massage, Shiatsu Massage, Swedish Massage and Reflexology Massage. Book your appointments right away and enjoy your massage at affordable price.
DOI: 10.17632/jdtj7xx5fn
title: Data Set and Test Result of the Article "Corporate Governance of Banks, The Key for Trust: A Bibliometric Analysis"

description: The data was extracted from Web of Science (WOS) electronic database. This broad, multidisciplinary online database gives users access to a number of citation databases (e.g. Science Citation Index Expanded (SCIE), Social Sciences Citation Index (SSCI), Emerging Sources Citation Index (ESCI). This database is commonly preferred in bibliometric studies as it only incorporates the publications with the highest standards and adheres to the most relevant publications with useful metadata.
DOI: 10.17632/s6zzv4nd3s
title: Poxviruses and paramyxoviruses use a conserved mechanism of STAT1 antagonism to inhibit interferon signaling (Raw Data)

description: Raw data for figures corresponding to the publication "A strategy to suppress STAT1 signalling conserved in pathogenic poxviruses and paramyxoviruses".
DOI: 10.17632/9dc7nmfxf8
title: LINF_360052700

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/pgv7xywj5z
title: Western blots for Neuregulin 4 suppresses NASH-related liver cancer by restraining tumor-prone liver microenvironment

description: Western blots used in the study entitled as "Neuregulin 4 suppresses NASH-related liver cancer by restraining tumor-prone liver microenvironment" submitted to Cell Metabolism
DOI: 10.15468/dl.qecf6q
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is University of California Santa Barbara Lichen Collection",
 "Country is Croatia"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000386-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/2r4jdxbrb2
title: Inhaled diesel exhaust particles result in microbiome-related systemic inflammation and altered cardiovascular disease biomarkers in C57Bl/6 male mice.

description: The gut microbiota plays a vital role in host homeostasis and is associated with inflammation and cardiovascular disease (CVD) risk. Exposure to particulate matter (PM) is a known mediator of inflammation and CVD and is reported to promote dysbiosis and decreased intestinal integrity. However, the role of inhaled traffic-generated PM on the gut microbiome and its corresponding systemic effects are not well-characterized. Thus, we investigated the hypothesis that exposure to inhaled diesel exhaust particles (DEP) alters the gut microbiome and promotes microbial-related inflammation and CVD biomarkers. 4-6-wk-old male C57Bl/6 mice on either a low-fat (LF) or high-fat (HF) diet were exposed via oropharyngeal aspiration to 35 μg DEP suspended in 35 μl saline or saline only (CON) 2x/week for 30 days. To determine whether probiotics could prevent diet or DEP exposure mediated alterations in the gut microbiome or systemic outcomes, a subset of animals on the HF diet was treated orally with 0.3 g/day of Winclove Ecologic Barrier probiotics throughout the study. Our results show that inhaled DEP exposure alters gut microbial profiles, including reducing Actinobacteria and expanding Verrucomicrobia and Proteobacteria. We observed increased circulating LPS, altered circulating cytokines, and CVD biomarkers in DEP-exposed and HF diet mice. Furthermore, probiotics attenuated the reduction of Actinobacteria and expansion of Proteobacteria and mitigated inflammatory and CVD responses in DEP exposed and/or HF diet mice. Key findings of this study are that inhaled DEP exposure altered gut microbial profiles that play a role in systemic inflammation and early CVD biomarkers that can be mitigated with probiotics.
DOI: 10.17632/ts46ny74x7
title: Fine-tuned KDM1A alternative splicing regulates human cardiomyogenesis through an enzymatic-independent mechanism

description: The histone demethylase KDM1A is a multi-faceted regulator of critical developmental processes, including mesodermal and cardiac tube formation during mice gastrulation. The fine-tuning of KDM1A splicing has been linked to regulating the transcriptional program of excitable cells such as neurons. However, it is unknown whether modulating the expression of KDM1A isoforms is crucial for the specification and maintenance of cell identity of other cell types sensitive to electrical cues such as the cardiomyocytes. 
Here, we investigated the role of ubKDM1A and KDM1A+2a ubiquitous splice variants during cardiomyogenesis and evaluated their impact on the regulation of cardiac differentiation in vitro. We discovered a temporal modulation of ubKDM1A and KDM1A+2a isoform levels during human and mouse fetal cardiac development. Therefore, we generated human embryonic stem cells (hESCs) exclusively devoid of one or both isoforms and assessed their potential to derive cardiomyocytes. KDM1A depletion severely impaired cardiac differentiation. Conversely, KDM1A+2a-/- hESCs give rise to functional cardiomyocytes, displaying increased beating amplitude and frequency compared to wild-type cells. Transcriptomic profiling revealed that KDM1A-/- cardiomyocytes fail to activate an effective cardiac transcriptional program, while the depletion of KDM1A+2a enhances the expression of key cardiogenic markers. Notably, the impaired cardiac differentiation of KDM1A-/- cells can be rescued by re-expressing ubKDM1A or catalytically deficient ubKDM1A-K661A, but not by KDM1A+2a or KDM1A+2a-K661A. These data demonstrate a divergent role of the two KDM1A isoforms that is independent of their enzymatic activity. Through an exhaustive biochemical and genome-wide binding characterization, we excluded that the opposite ubKDM1A- and KDM1A+2a-mediated regulation of cardiac differentiation resides into differential substrate specificity, H3K4 demethylation efficiency, core-partners binding affinity, or alternative genome binding profiles. Our findings prove the existence of a divergent scaffolding role of KDM1A splice variants during hESC differentiation into cardiomyocytes.
DOI: 10.17632/c4fgbzvzp5
title: LINF_340013100

description: NOC4; Leishmania infantum (strain JPCM5)
DOI: 10.17632/sxcygkvgd9
title: Steiner et al. Telmen 2021

description: Data S2: Presence- absence data matrix of 331 Cambrian Stage 3 Small Skeletal Fossil (SSF) taxa based on literature data and own observations from 35 terrains utilized for hierarchical cluster analysis (Figure 5). 
Data Set S4. C-O Isotope compositions in Telmen carbonates relative to Vienna Pee Dee Belemnite (V-PDB) in ‰.
Data Set S5. U-Pb ratios and calculated ages derived from single spot LA-ICP-MS analyses on Telmen, Tuva and Zhavkhan Terrain detrital zircons. The data set can be found under:
DOI: 10.17632/sv9d9hmvrm
title: Analysis of local protein accumulation kinetics by live-cell imaging in yeast systems

description: This Dataset relates to Star Protocols paper: "Analysis of local protein accumulation kinetics by live-cell imaging in yeast systems."
DOI: 10.17632/3ps78rjckg
title: Pyridine, (water cluster)n=1-9: DFT inputfiles

description: B3LYP Input files of pyridine and (water cluster)n=1-9
DOI: 10.17632/689fktg5gb
title: Meshes_to_test_AES

description: Meshes used in the paper "Method of averaged element splittings for diffusion terms discretization in vertex-centered framework" submitted to Journal of Computational Physics
DOI: 10.17632/nvp49jbmb6
title: LINF_360057900

description: Leucine-rich repeat domain containing protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/yk5g6vbxth
title: LINF_290029000

description: leucine-rich repeat protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/32b93tyhgp
title: Inhibitory effect of thymol on tympanostomy tube biofilms of methicillin-resistant Staphylococcus aureus and ciprofloxacin-resistant Pseudomonas aeruginosa

description: Figure 1. The effects of thymol on the viability of methicillin-resistant Staphylococcus aureus (MRSA) and ciprofloxacin-resistant Pseudomonas aeruginosa (CRPA).
Figure 2. The effects of thymol on the adhesion of methicillin-resistant Staphylococcus aureus (MRSA) and ciprofloxacin-resistant Pseudomonas aeruginosa (CRPA). 
Figure 3. The activity of thymol against the formation of biofilms produced by methicillin-resistant Staphylococcus aureus (MRSA) and ciprofloxacin-resistant Pseudomonas aeruginosa (CRPA).
Figure 4.  The activity of thymol against the preformed biofilms of methicillin-resistant Staphylococcus aureus (MRSA) and ciprofloxacin-resistant Pseudomonas aeruginosa (CRPA).
DOI: 10.17632/xzvtr7csdv
title: Data for: The Association of Chest Pain Duration and other Historical Features with Major Adverse Cardiac Events

description: Dataset for chest pain historical features.
DOI: 10.15468/dl.j8gd2s
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is MLZ Fish Collection (Arctos)",
 "Country is Croatia"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000385-250221090833381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/62tdxw58dm
title: Lymphadenectomy in Robotic and Laparoscopic Gastrectomy – A Retrospective Study with Propensity Score Matching.

description: We retrospectively reviewed the medical records of 215 consecutive patients with gastric cancer who underwent RG or LG with D1+ or D2 lymphadenectomy at our institution between January 2011 and December 2020. Exclusion criteria were residual gastric cancer, proximal gastrectomy, and D1 lymphadenectomy. Propensity score matching analysis was performed to control selection bias by age, sex, body mass index, operation method, lymphadenectomy, and pathological stage. Of the total cohort, 34 matched pairs were selected. Comparisons between groups were performed using the Fisher’s exact test or Mann-Whitney U-test, as appropriate.
DOI: 10.17632/73r8vrxksx
title: Ocular Surface Disorders Affect Quality of Life in Patients with Autoimmune Blistering Skin Diseases: A Cross-Sectional Study

description: All Raw Data of "Ocular Surface Disorders Affect Quality of Life in Patients with Autoimmune Blistering Skin Diseases: A Cross-Sectional Study"
DOI: 10.17632/p67rwz88ty
title: “Data for: Cartography as a Research Method for Work and Subjectivity Studies” published by RAC-Revista de Administração Contemporânea

description: These data refer to the paper “Cartography as a Research Method for Work and Subjectivity Studies”. This article presents cartography as a relevant method to studies related to work and subjectivity in the area of Administration and the files available refer to: Table 1 - Path as a flâneur-cartographer in Porto Alegre 2017-2019; Table 2 - Key informants; Table 3 - Introduction of migrant-participants and refugee-participants; Table 4 - Interviews and meetings with the migrant-participants and refugee-participants.
DOI: 10.17632/v98z9fdbbw
title: LINF_320018600

description: protein kinase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/mk32cvh7h5
title: LINF_160006300

description: protein of unknown function - conserved Leishmania infantum (strain JPCM5)
DOI: 10.17632/z2kvpvtdn3
title: Detection and discrimination of electrical stimuli from an upper limb cuff electrode in M. Mulatta

description: We examined psychophysical data over several months from detection and discrimination experiments performed with macacque monkeys. Each trial is recorded in the data. Result column codes: Miss=0, Hit=1, False Alarm=2, Correct Rejection=3.  Python data wrangling software for the experiment can be obtained at https://github.com/schlich/psychoanalyze.
DOI: 10.17632/wpj5pmcgym
title: Saprininae: phylogeny, biogeography and a new classification of the subfamily (Coleoptera: Histeridae)

description: input_files contains all of the input files used for the main analyses in the study, arranged by dataset, then by program used.

tree_files contains all of the phylogenetic trees generated by the main analyses in the study.
DOI: 10.17632/6xwtyt72tw
title: Laboratory experiments using crushed pumice

description: Sedimentary oxygen demand laboratory experiment 
An incubation experiment using sediment cores was conducted to assess the effect of using crushed pumice as a sand-capping material to suppress sediment oxygen consumption.

Sedimentary nutrient release rate laboratory experiment 
The sediment nutrient release experiment was conducted using the sediment cores, to assess the effect of using crushed pumice as a sand-capping material to suppress nutrients release from sediments.

Nutrient adsorption experiment
The artificial seawater in the beaker was continuously stirred during the experiment, and the crushed pumice was kept in suspension throughout the experiment. Nutrient concentrations were monitored to evaluate nutrient adsorption rates by crushed pumice.

Exposure experiment
Exposure experiments were conducted with crushed pumice in suspension to examine the effects of the resuspension of crushed pumice on bivalves.
DOI: 10.17632/mt7h7mb5zs
title: antisaccade_ESS_PSQI

description: antisaccade ESS PSQI
DOI: 10.17632/nw5k62hfyh
title: Appendix S1. Work Ability Index (WAI): first three questions (WAI-1, WAI-2, WAI-3)

description: Work Ability Index (WAI): first three questions (WAI-1, WAI-2, WAI-3)
DOI: 10.17632/5p34dtn6fm
title: Supplementary material for: "PANAS: Pipeline and a Case Study to Obtain Synonymous and Nonsynonymous Substitution Rates in Genes of Platyhelminthes" (https://doi.org/10.1654/COPA-D-22-00011)

description: Information on the identifiers of genes and mitochondrial genomes and complementary results obtained from the work entitled "PANAS: Pipeline and a Case Study to Obtain Synonymous and Nonsynonymous Substitution Rates in Genes of Platyhelminthes" published in Comparative Parasitology, 90(1):5-10 (2023) (https://doi.org/10.1654/COPA-D-22-00011). 
The data set, results and pipeline of this work are available in the GitHub repository of PANAS (https://github.com/victorcana/PANAS) and in this Mendeley repository.
DOI: 10.17632/8shrk78pjn
title: LINF_340006900

description: mt-SAF4
Leishmania infantum (strain JPCM5)
DOI: 10.17632/p98wcs3g4b
title: Impact of cooling methods on ageing in LIB cells

description: Battery cycler data from degeneration study with different cooling methods