cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6003623.v1
title: MOESM3 of Seasonal change in sexual differences in nestling size and survival: a framework to evaluate sex-dependent environmental sensitivity in the wild

description: Additional file 3: Table S3. Model ranking of the LMM for nestling wing length according to the AIC.
DOI: 10.6084/m9.figshare.6003611
title: MOESM2 of Seasonal change in sexual differences in nestling size and survival: a framework to evaluate sex-dependent environmental sensitivity in the wild

description: Additional file 2: Table S2. Model ranking of the LMM for nestling tarsus length according to the AIC.
DOI: 10.6084/m9.figshare.6003611.v1
title: MOESM2 of Seasonal change in sexual differences in nestling size and survival: a framework to evaluate sex-dependent environmental sensitivity in the wild

description: Additional file 2: Table S2. Model ranking of the LMM for nestling tarsus length according to the AIC.
DOI: 10.6084/m9.figshare.6003605
title: Additional file 9: of Involvement of methylation of MicroRNA-122, â 125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury

description: INH administration causes alterations in RORÎłt, IL-17, MIP-2, and CXCL1 mRNA expression levels and p-STAT3, IL-17, MIP-2, and CXCL1 protein levels in the liver. Supplementary data and statistical analysis for Figure S10. (XLSX 51Â kb)
DOI: 10.6084/m9.figshare.6003605.v1
title: Additional file 9: of Involvement of methylation of MicroRNA-122, â 125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury

description: INH administration causes alterations in RORÎłt, IL-17, MIP-2, and CXCL1 mRNA expression levels and p-STAT3, IL-17, MIP-2, and CXCL1 protein levels in the liver. Supplementary data and statistical analysis for Figure S10. (XLSX 51Â kb)
DOI: 10.6084/m9.figshare.6003599
title: MOESM1 of Seasonal change in sexual differences in nestling size and survival: a framework to evaluate sex-dependent environmental sensitivity in the wild

description: Additional file 1: Table S1. Model ranking of the LMM for nestling weight according to the AIC.
DOI: 10.6084/m9.figshare.6003599.v1
title: MOESM1 of Seasonal change in sexual differences in nestling size and survival: a framework to evaluate sex-dependent environmental sensitivity in the wild

description: Additional file 1: Table S1. Model ranking of the LMM for nestling weight according to the AIC.
DOI: 10.6084/m9.figshare.6003584
title: Additional file 8: of Involvement of methylation of MicroRNA-122, â 125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury

description: mRNA and protein expression levels of STAT3 and MAPK14 in the liver tissue of different groups. Supplementary data and statistical analysis for Figure S9. (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.6003584.v1
title: Additional file 8: of Involvement of methylation of MicroRNA-122, â 125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury

description: mRNA and protein expression levels of STAT3 and MAPK14 in the liver tissue of different groups. Supplementary data and statistical analysis for Figure S9. (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.6003575
title: Additional file 9: of VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

description: Species assignment results from reconstructed nearly full-length 16S rRNA gene sequences from the metagenomic shotgun sequencing data of a mock community. (XLS 61Â kb)
DOI: 10.6084/m9.figshare.6003575.v1
title: Additional file 9: of VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

description: Species assignment results from reconstructed nearly full-length 16S rRNA gene sequences from the metagenomic shotgun sequencing data of a mock community. (XLS 61Â kb)
DOI: 10.6084/m9.figshare.6003566
title: Additional file 8: of VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

description: Number of assigned sequences for several sequence categories using the two different reference sequence databases. a. â Othersâ indicates that sequences contain more than two categories of sequences (e.g., 16S rRNA genes and tRNA genes). (XLS 25Â kb)
DOI: 10.6084/m9.figshare.6003566.v1
title: Additional file 8: of VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

description: Number of assigned sequences for several sequence categories using the two different reference sequence databases. a. â Othersâ indicates that sequences contain more than two categories of sequences (e.g., 16S rRNA genes and tRNA genes). (XLS 25Â kb)
DOI: 10.6084/m9.figshare.6003563
title: Additional file 7: of Involvement of methylation of MicroRNA-122, â 125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury

description: mRNA and protein expression levels of Cycling G1 and CAT-1 in the liver tissue of the different groups. Supplementary data and statistical analysis for Figure S8. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.6003563.v1
title: Additional file 7: of Involvement of methylation of MicroRNA-122, â 125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury

description: mRNA and protein expression levels of Cycling G1 and CAT-1 in the liver tissue of the different groups. Supplementary data and statistical analysis for Figure S8. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.6003554
title: Additional file 7: of VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

description: Correlation coefficients of genus composition of the Singer et al. mock community between theoretical composition and four toolsâ composition. (XLS 63Â kb)
DOI: 10.6084/m9.figshare.6003554.v1
title: Additional file 7: of VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

description: Correlation coefficients of genus composition of the Singer et al. mock community between theoretical composition and four toolsâ composition. (XLS 63Â kb)
DOI: 10.6084/m9.figshare.6003545
title: Additional file 6: of Involvement of methylation of MicroRNA-122, â 125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury

description: DNA methylation at particular CG dinucleotides within the gene promoter of miR-122, miR-125b, and miR-106b in liver tissues from INH-administered rats . Supplementary data and statistical analysis for Figure S7. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.6003545.v1
title: Additional file 6: of Involvement of methylation of MicroRNA-122, â 125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury

description: DNA methylation at particular CG dinucleotides within the gene promoter of miR-122, miR-125b, and miR-106b in liver tissues from INH-administered rats . Supplementary data and statistical analysis for Figure S7. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.6003536
title: Additional file 6: of VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

description: List of the strains for which the inferred 16S rRNA gene copy number differed by more than threefold as compared with the real copy number. (DOC 24 kb)
DOI: 10.6084/m9.figshare.6003536.v1
title: Additional file 6: of VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

description: List of the strains for which the inferred 16S rRNA gene copy number differed by more than threefold as compared with the real copy number. (DOC 24 kb)
DOI: 10.6084/m9.figshare.6003503
title: Additional file 4: of VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

description: List of strain names in the 16S rRNA gene copy number reference database. a. For each strain, a RefSeq ID is shown of the representative replicon that contains 16S rRNA gene copies. b. Class name of the strain in the phylum Proteobacteria or phylum name of the strain in other phyla is shown. (XLS 210Â kb)
DOI: 10.6084/m9.figshare.6003503.v1
title: Additional file 4: of VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

description: List of strain names in the 16S rRNA gene copy number reference database. a. For each strain, a RefSeq ID is shown of the representative replicon that contains 16S rRNA gene copies. b. Class name of the strain in the phylum Proteobacteria or phylum name of the strain in other phyla is shown. (XLS 210Â kb)
DOI: 10.6084/m9.figshare.6003497
title: Additional file 4: of Involvement of methylation of MicroRNA-122, â 125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury

description: Expression levels of miR-122, miR-125b, and miR-106b in the liver tissue of different groups. Supplementary data and statistical analysis for Figure S6. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.6003497.v1
title: Additional file 4: of Involvement of methylation of MicroRNA-122, â 125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury

description: Expression levels of miR-122, miR-125b, and miR-106b in the liver tissue of different groups. Supplementary data and statistical analysis for Figure S6. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.6003485
title: Additional file 3: of VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

description: List of phylum names for the 28,977 high-quality 16S rRNA gene sequences in VITCOMIC2. (XLS 21Â kb)
DOI: 10.6084/m9.figshare.6003485.v1
title: Additional file 3: of VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

description: List of phylum names for the 28,977 high-quality 16S rRNA gene sequences in VITCOMIC2. (XLS 21Â kb)
DOI: 10.6084/m9.figshare.6003479
title: Additional file 3: of Involvement of methylation of MicroRNA-122, â 125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury

description: mRNA and protein expression levels of IL-6 and TNF-Îą in the liver tissue of the different groups. Supplementary data and statistical analysis for Figure S5. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.6003479.v1
title: Additional file 3: of Involvement of methylation of MicroRNA-122, â 125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury

description: mRNA and protein expression levels of IL-6 and TNF-Îą in the liver tissue of the different groups. Supplementary data and statistical analysis for Figure S5. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.6003470
title: Additional file 2: of VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

description: List of RDP IDs for the 28,977 high-quality 16S rRNA gene sequences in VITCOMIC2. (XLS 3610Â kb)
DOI: 10.6084/m9.figshare.6003470.v1
title: Additional file 2: of VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

description: List of RDP IDs for the 28,977 high-quality 16S rRNA gene sequences in VITCOMIC2. (XLS 3610Â kb)
DOI: 10.6084/m9.figshare.6003461
title: Additional file 2: of Involvement of methylation of MicroRNA-122, â 125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury

description: Serum ALT and AST levels of different groups. Supplementary data and statistical analysis for Figure S4. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.6003461.v1
title: Additional file 2: of Involvement of methylation of MicroRNA-122, â 125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury

description: Serum ALT and AST levels of different groups. Supplementary data and statistical analysis for Figure S4. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.6003446
title: MOESM1 of A CRISPR screen for factors regulating SAMHD1 degradation identifies IFITMs as potent inhibitors of lentiviral particle delivery

description: Additional file 1: Table S1. Complete MAGeCK analysis. For each gene present in the knockout ISG library, we indicate the MAGeCK gene score, rank, and the associated p value as determined by MAGeCK. Values of IFNÎą induction based on Goujon et al. [29] are also shown
DOI: 10.6084/m9.figshare.6003446.v1
title: MOESM1 of A CRISPR screen for factors regulating SAMHD1 degradation identifies IFITMs as potent inhibitors of lentiviral particle delivery

description: Additional file 1: Table S1. Complete MAGeCK analysis. For each gene present in the knockout ISG library, we indicate the MAGeCK gene score, rank, and the associated p value as determined by MAGeCK. Values of IFNÎą induction based on Goujon et al. [29] are also shown
DOI: 10.6084/m9.figshare.6003437
title: Additional file 1: of Involvement of methylation of MicroRNA-122, â 125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury

description: Quantification of histological scoring. Supplementary data and statistical analysis for Figure S3. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.6003437.v1
title: Additional file 1: of Involvement of methylation of MicroRNA-122, â 125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury

description: Quantification of histological scoring. Supplementary data and statistical analysis for Figure S3. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.6003398
title: Additional file 4: of Clinical utility of exome sequencing in individuals with large homozygous regions detected by chromosomal microarray analysis

description: Details of rare homozygous variants discovered in 74% (39/53) of the ROH cases that has variants relevant or potentially relevant to the phenotype of the patient. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.6003398.v2
title: Additional file 4: of Clinical utility of exome sequencing in individuals with large homozygous regions detected by chromosomal microarray analysis

description: Details of rare homozygous variants discovered in 74% (39/53) of the ROH cases that has variants relevant or potentially relevant to the phenotype of the patient. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.6003398.v1
title: Additional file 4: of Clinical utility of exome sequencing in individuals with large homozygous regions detected by chromosomal microarray analysis

description: Details of rare homozygous variants discovered in 74% (39/53) of the ROH cases that has variants relevant or potentially relevant to the phenotype of the patient. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.6003368
title: Additional file 3: of Underutilization and disparities in access to EGFR testing among Medicare patients with lung cancer from 2010 â 2013

description: Number and percentage of lung cancer patients who underwent tumor molecular testing. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.6003368.v1
title: Additional file 3: of Underutilization and disparities in access to EGFR testing among Medicare patients with lung cancer from 2010 â 2013

description: Number and percentage of lung cancer patients who underwent tumor molecular testing. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.6003353
title: Additional file 2: of Underutilization and disparities in access to EGFR testing among Medicare patients with lung cancer from 2010 â 2013

description: Timeline of selected clinical guidelines and regulatory decisions. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6003353.v1
title: Additional file 2: of Underutilization and disparities in access to EGFR testing among Medicare patients with lung cancer from 2010 â 2013

description: Timeline of selected clinical guidelines and regulatory decisions. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6003344
title: Additional file 2: of Clinical utility of exome sequencing in individuals with large homozygous regions detected by chromosomal microarray analysis

description: Clinical Phenotype information for the 53 ROH patients along with CMA findings. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.6003344.v1
title: Additional file 2: of Clinical utility of exome sequencing in individuals with large homozygous regions detected by chromosomal microarray analysis

description: Clinical Phenotype information for the 53 ROH patients along with CMA findings. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.6003338
title: Additional file 1: of Underutilization and disparities in access to EGFR testing among Medicare patients with lung cancer from 2010 â 2013

description: FDA-Approved Molecularly Targeted Treatments for Lung Cancer. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6003338.v1
title: Additional file 1: of Underutilization and disparities in access to EGFR testing among Medicare patients with lung cancer from 2010 â 2013

description: FDA-Approved Molecularly Targeted Treatments for Lung Cancer. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6003329
title: Additional file 2: of Genome-scale model-driven strain design for dicarboxylic acid production in Yarrowia lipolytica

description: SMBL file of iYLI647. (XML 2312Â kb)
DOI: 10.6084/m9.figshare.6003329.v1
title: Additional file 2: of Genome-scale model-driven strain design for dicarboxylic acid production in Yarrowia lipolytica

description: SMBL file of iYLI647. (XML 2312Â kb)
DOI: 10.6084/m9.figshare.6003305
title: Additional file 1: of Genome-scale model-driven strain design for dicarboxylic acid production in Yarrowia lipolytica

description: Changed, added and deleted reactions in iYLI647 model in comparison with iMK735 scaffold model. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.6003305.v1
title: Additional file 1: of Genome-scale model-driven strain design for dicarboxylic acid production in Yarrowia lipolytica

description: Changed, added and deleted reactions in iYLI647 model in comparison with iMK735 scaffold model. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.6002624
title: Dissertation maps

description: Actinopterygii maps
DOI: 10.6084/m9.figshare.6002624.v1
title: Actinopterygii maps

description: Actinopterygii maps
DOI: 10.6084/m9.figshare.6002624.v2
title: Dissertation maps

description: Actinopterygii maps
DOI: 10.6084/m9.figshare.6002624.v3
title: Dissertation maps

description: Actinopterygii maps
DOI: 10.6084/m9.figshare.6002624.v5
title: Dissertation maps

description: Actinopterygii maps
DOI: 10.6084/m9.figshare.6002624.v4
title: Dissertation maps

description: Actinopterygii maps
DOI: 10.6084/m9.figshare.6002603
title: sample-cam-data

description: Sample CAM data for Python tutorial
DOI: 10.6084/m9.figshare.6002603.v1
title: sample-cam-data

description: Sample CAM data for Python tutorial
DOI: 10.6084/m9.figshare.6002597
title: Theoretical ribosomal protein mass fingerprint of Schizosaccharomyces pombe

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of<i> Schizosaccharomyces pombe.</i><br><br>
DOI: 10.6084/m9.figshare.6002597.v1
title: Theoretical ribosomal protein mass fingerprint of Schizosaccharomyces pombe

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of<i> Schizosaccharomyces pombe.</i><br><br>
DOI: 10.6084/m9.figshare.6002594
title: Theoretical ribosomal protein mass fingerprint of Saccharomyces cerevisiae

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Saccharomyces cerevisiae.</i><br><br>
DOI: 10.6084/m9.figshare.6002594.v1
title: Theoretical ribosomal protein mass fingerprint of Saccharomyces cerevisiae

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Saccharomyces cerevisiae.</i><br><br>
DOI: 10.6084/m9.figshare.6002591
title: Bahrami Figure 6: Model

description: MATLAB scripts to generate Figure 6
DOI: 10.6084/m9.figshare.6002591.v1
title: Bahrami Figure 6: Model

description: MATLAB scripts to generate Figure 6
DOI: 10.6084/m9.figshare.6002582
title: On the prevalence of uninformative parameters in statistical models: solutions to improve model selection in conservation biology

description: This data set was used in a study of the prevalence of uninformative parameters in model selection studies in conservation biology. The data are a result of a literature review of model selection studies using Akaike's Information Criteria published in the journals Biological Conservation, Conservation Biology, Ecological Applications and Journal of Applied Ecology in 2014. <br>
DOI: 10.6084/m9.figshare.6002573
title: Data_WRR.zip

description: This data was used to evaluate the effectiveness of multivariate adaptive regression splines in deriving parameter transfer functions (PTFs) to quantify catchments impacts of land use change and associated uncertainty. The PTFs related relevant land use parameters to catchment characteristics.
DOI: 10.6084/m9.figshare.6002573.v1
title: Data_WRR.zip

description: This data was used to evaluate the effectiveness of multivariate adaptive regression splines in deriving parameter transfer functions (PTFs) to quantify catchments impacts of land use change and associated uncertainty. The PTFs related relevant land use parameters to catchment characteristics.
DOI: 10.6084/m9.figshare.6002567
title: Test2

description: test 1 2 3
DOI: 10.6084/m9.figshare.6002567.v2
title: Test2

description: test 1 2 3
DOI: 10.6084/m9.figshare.6002567.v1
title: Test2

description: test 1 2 3
DOI: 10.6084/m9.figshare.6002444
title: ReadMe - How to reproduce results

description: README file with instructions for reproducing results from JACKS 2018 paper.
DOI: 10.6084/m9.figshare.6002444.v1
title: ReadMe - How to reproduce results

description: README file with instructions for reproducing results from JACKS 2018 paper.
DOI: 10.6084/m9.figshare.6002441
title: test

description: Map for Acanthemblemaria rivasi
DOI: 10.6084/m9.figshare.6002438
title: JACKS 2019 Data and Results

description: Result of experiments run for JACKS 2019 paper.<br>Each zip file contains the results for the method as given in its title. Files within each zip file provide results for all cell lines in each dataset.<br>Data.zip contains collated and reformatted data files used.<br>README.txt provides list of commands to be used (with github code at https://github.com/felicityallen/JACKS ) to produce these results.
DOI: 10.6084/m9.figshare.6002438.v1
title: Results

description: Result of experiments run for JACKS 2018 paper
DOI: 10.6084/m9.figshare.6002438.v2
title: Results

description: Result of experiments run for JACKS 2019 paper.<br>Each zip file contains the results for the method as given in its title. Files within each zip file provide results for all cell lines in each dataset.
DOI: 10.6084/m9.figshare.6002417
title: Avana Data

description: Avana data and related files reformatted as used to generate results in JACKS 2018 paper.
DOI: 10.6084/m9.figshare.6002417.v1
title: Avana Data

description: Avana data and related files reformatted as used to generate results in JACKS 2018 paper.