cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10138303
title: Multilingual paired code and comment changes

description: Dataset used for the master's thesis "LLMs for Code Comment Consistency." Covers the languages Go, Java, JavaScript, TypeScript, and Python. All data is mined from permissively-licensed GitHub public projects.
This dataset consists of pairs of function/method code blocks and their documentation comments, before and after commits.Examples are labeled 0 if the comment was not changed before and after, and 1 if the comment was changed. For the purpose of comment consistency, that means a 1-labeled example has an old comment that is inconsistent with the new code.If you're training a code summarization or comment generation task, then of course ignore the classification label.

All-22k contains the training, validation, and test set used in the models trained in the paper. The examples are balanced by language and between the positive and negative classes. Any code repository is only present in one of these sets.
DOI: 10.5281/zenodo.10144732
title: TN397 SCOPE-Gradients-4 cruise, Wirewalker

description: This dataset was collected during the 4th SCOPE-Gradients cruise.  The SCOPE-Gradients program was designed to test conceptual and mathematical models of biogeochemical organization across the transition zone between different ecosystems. The Wirewalker is a  wave-powered drifting profiler designed to collect autonomous, vertically-resolved oceanographic observations. The profiler moves along a wire that is suspended between a float at the sea surface and a weight placed at a depth of tens or hundreds of meters. The system horizontal displacement follows the ocean currents. Wirewalker measurements include temperature, salinity, depth, beam attenuation, backscattering, chlorophyll fluorescence, CDOM fluorescence, downwelling irradiance in four spectral bands, and dissolved oxygen concentration.
DOI: 10.5281/zenodo.10144733
title: TN397 SCOPE-Gradients-4 cruise, Wirewalker

description: This dataset was collected during the 4th SCOPE-Gradients cruise.  The SCOPE-Gradients program was designed to test conceptual and mathematical models of biogeochemical organization across the transition zone between different ecosystems. The Wirewalker is a  wave-powered drifting profiler designed to collect autonomous, vertically-resolved oceanographic observations. The profiler moves along a wire that is suspended between a float at the sea surface and a weight placed at a depth of tens or hundreds of meters. The system horizontal displacement follows the ocean currents. Wirewalker measurements include temperature, salinity, depth, beam attenuation, backscattering, chlorophyll fluorescence, CDOM fluorescence, downwelling irradiance in four spectral bands, and dissolved oxygen concentration.
DOI: 10.5066/p98atogz
title: ShakeMap Atlas V4 and AtlasCat

description: The Atlas of ShakeMaps (~14,100 earthquakes, 1900-2020) provides a consistent and quantitative description of the distribution of shaking intensity for calibrating earthquake loss estimation methodologies, like those used in the USGS Prompt Assessment of Global Earthquakes for Response (PAGER)�system. Version 4 of the Atlas includes a vastly expanded compilation of ShakeMaps for consequential and widely felt earthquakes using updated ShakeMap (Version 4)�software. For each event, we have attempted to gather available macroseismic, recorded ground motions and finite fault inputs. AtlasCat�is the companion catalog to Atlas V4. For each event in the Atlas, AtlasCat contains population exposure to each intensity level, loss information, and summary data regarding the number of ground motion recordings, intensity observations, and availability of a finite fault. Please let us know if you know of additional datasets that could be added to specific events or sets of events. � Accessing the ShakeMap Atlas Select events or collections of events ShakeMap Atlas can be accessed via the USGS Earthquake Catalog Search�or with queries from the search tools we provide described below. � 1. Using the USGS Earthquake map interface The full ShakeMap Atlas is contains too many earthquakes to load in its entirety via the USGS Earthquake map interface. To access the Atlas using the catalog search tool, it is necessary to search for a smaller subset of events as search results displayed via the map interface is limited to 2,000 events. A sample search of Atlas ShakeMaps from 2000-2005 can be accessed here. To download a comma-separated value (csv) file of all or a subset of Atlas events using the same catalog search tool, go to the linked sample Atlas search page, click on the "gear" icon in the upper right banner and then click on the "Search Earthquake Catalog" button. Simply modify the query as needed, then change the "Output Options? -&gt; ?Format? -&gt; ?CSV?. � 2. Libcomcat and Getproducts Libcomcat is a Python library that allows command line tools easily access the ShakeMap Atlas, or specified subsets, and to then download any of the associated ShakeMap products and files for each event. One of the standard tools with libcomcat is getproducts, which greatly facilitates the retrieval of select earthquakes and associated products. Even more complex queries can be facilitated with other libcomcat tools. For example, view a sample ComCat search using an iPython Notebook.
DOI: 10.6084/m9.figshare.13934393
title: participants.tsv

description: List of participant details for dataset
DOI: 10.6084/m9.figshare.13934393.v1
title: participants.tsv

description: List of participant details for dataset
DOI: 10.6084/m9.figshare.24560227
title: GitHub CI/CD tools use datamining

description: dataset of GitHub CI/CD repositories
DOI: 10.6084/m9.figshare.24560227.v4
title: GitHub CI/CD tools use datamining

description: dataset of GitHub CI/CD repositories
DOI: 10.6084/m9.figshare.24560227.v3
title: GitHub CI/CD tools use datamining

description: dataset of GitHub CI/CD repositories
DOI: 10.5281/zenodo.10144912
title: Unconventional charge-density-wave gap in monolayer NbS2

description: This repository contains the data and source code associated with the paper: *Unconventional charge-density-wave gap in monolayer NbS₂*.
Experimental setup
STM and STS were carried out at a base operating temperature of T₀ = 0.4 K after in-situ transfer from the preparation chamber. STS was performed with the lock-in technique. STM images were taken in constant current mode.
Computational setup
All DFT and DFPT calculations were performed using Quantum ESPRESSO 7.1.
Further information in the README file.
DOI: 10.5281/zenodo.10144913
title: Unconventional charge-density-wave gap in monolayer NbS2

description: This repository contains the data and source code associated with the paper: *Unconventional charge-density-wave gap in monolayer NbS₂*.
Experimental setup
STM and STS were carried out at a base operating temperature of T₀ = 0.4 K after in-situ transfer from the preparation chamber. STS was performed with the lock-in technique. STM images were taken in constant current mode.
Computational setup
All DFT and DFPT calculations were performed using Quantum ESPRESSO 7.1.
Further information in the README file.
DOI: 10.6084/m9.figshare.13934396
title: task-rsvp_events.json

description: Details of events and triggers in EEG
DOI: 10.6084/m9.figshare.13934396.v1
title: task-rsvp_events.json

description: Details of events and triggers in EEG
DOI: 10.6084/m9.figshare.13934462
title: dataset_description.json

description: Dataset description
DOI: 10.6084/m9.figshare.13934462.v1
title: dataset_description.json

description: Dataset description
DOI: 10.3886/6sh9-ef83
title: Morocco Compact - Enterprise Support-SME: Final Analysis Report
DOI: 10.3886/waqn-nx91
title: Morocco Compact - Enterprise Support-SME: Final Analysis Report
DOI: 10.6084/m9.figshare.24578740
title: CI/CD repos with tools

description: CI/CD repositories with tools used
DOI: 10.6084/m9.figshare.24578740.v1
title: Untitled Item

description: CI/CD repositories with tools used
DOI: 10.6073/pasta/e8c4ef2ceab5dd027a0598276fad722a
title: Coarse Woody Debris in Bisley Experimental Forest and the Rio Icacos Basin

description: Organic matter pools appear to differ in composition between Bisley and Icacos. On average (n=30), 79% of Bisley organic matter was composed of coarse woody debris. Of the remaining 21% organic matter pool, approximately 2% was from leaves, 9% was from fruit, 9% was from miscellaneous matter, and 1% was from wood matter with diameters &lt; 2.5 cm. In comparison, 57% (n=30) of Icacos organic matter was composed of coarse woody debris. Of the remaining 43% organic matter pool, approximately 0% was from fruit, 16% was from leaves, 10% was from miscellaneous matter, and 18% was from wood matter with diameters &lt; 2.5 cm. The data suggest a less recalcitrant organic matter pool in the Icacos environment and higher rates of turnover than in the Bisley environment. It was also apparent that woody matter (&lt; 2.5 cm diameter) deposition was a significant source of OM inputs in the Icacos plots. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.25345/c5445hp7k
title: MassIVE MSV000093738 - Gli3 co-IP/MS in SAG-treated NIH/3T3 cells
title: Co-IP of Gli3 from NIH/3T3 cells treated with the smoothened agonist SAG fractionated into nuclear and cytoplasmic fractions.
DOI: 10.21227/djg5-4395
title: Double Inverted Pendulum

description: Control system (Matlab Simulink) design of Full Order Observer, Full State feedback & LQR method for double inverted pendulum.Tasks 1. Develop a Simulink simulation of the dynamics. Use the following state variables: x1 = θ1; x2 = θ2; x3 = !1; x4 = !2 (Suggestion: Use the Matlab-function version demonstrated in class) 2. Develop a linear model, analytically (by assuming that the angles are small i.e, sin θ ≈ θ; cos θ ≈ 1, and that products of state variables are negligible) , and/or by the use of the Matlab function linmod. Find the open-loop poles of the system, i.e. the eigenvalues of the A matrix of the linearized model. 3. By the use of pole-placement, develop a full-state feedback control law to stabilize the pendulum vertically. Pick the closed loop poles to have approximately twice the magnitudes of the open-loop poles, but (of course) in the left half plane with a damping factor ζ of approximately 0.8. For your design, verify the robustness by comparing the Nyquist diagram with the ”Kalman forbidden circle”. Simulate the transient response for a small displacement from the balanced position. 4. By the use of the Linear Quadratic Regulator design method, find a full-state feedback control law, in which the state weighting matrix is diag(q1; q1; q2; q2) and the control weighing matrix is R = 1. Pick the weighting factors q1; q2 such that the closed loop pole locations are approximately the same magnitudes as those of Part 2. By use of a Nyquist diagram, show that the control law is robust. Simulate the transient response and compare with that of Part 3. 5. Suppose that only the angles, and not the angular velocities, are measured. Design a Kalman filter to estimate the state of the process, using only angle measurements. For robustness, make F = B and investigate robustness recovery. Simulate the transient response using the this Kalman filter as the observer together with the full-state feedback control law of Part 4. 6. Instead of the full-order observer of Part 5, use a reduced-order observer, with the poles located in the vicinity of those of Part 5. Compare robustness and transient response 7. Using the 3D Animation toolbox, animate the simulation. The final results should be submitted in the form of a report, discussing the methods you used and the results you obtained. Include graphs showing performance, robustness, etc. Present your report in the form of a technical paper offered for publication: in addition to the results, include words of explanation comparing the results of each task with those of other tasks. As an appendix, attach Matlab mfiles and model files that you used.
DOI: 10.5281/zenodo.10444503
title: Data for: Light-absorbing impurities in glacial environments over western Himalaya from reanalysis data and in situ observations

description: The repository contains information about 6 aerosol variables extracted from MERRA-2 reanalysis over western Himalayan region of Jammu and Kashmir. It also contains data about glacier ice chemistry based on 9 physicochemical characteristics of 3 glaciers nestled in the Greater Himalayan Mountain range of Kashmir. Air mass back trajectories as simulated from HYSPLIT model on a seasonal basis are also provided.
DOI: 10.5281/zenodo.10444504
title: Data for: Light-absorbing impurities in glacial environments over western Himalaya from reanalysis data and in situ observations

description: The repository contains information about 6 aerosol variables extracted from MERRA-2 reanalysis over western Himalayan region of Jammu and Kashmir. It also contains data about glacier ice chemistry based on 9 physicochemical characteristics of 3 glaciers nestled in the Greater Himalayan Mountain range of Kashmir. Air mass back trajectories as simulated from HYSPLIT model on a seasonal basis are also provided.
DOI: 10.5281/zenodo.10444289
title: Data for "Unveiling the effect of Ni on the formation and structure of Earth's inner core"

description: The source data for the figures in the manuscript "Unveiling the effect of Ni on the formation and structure of Earth’s inner core".

The .xlsx files can be read via Microsoft Excel.
DOI: 10.5281/zenodo.10444290
title: Data for "Unveiling the effect of Ni on the formation and structure of Earth's inner core"

description: The source data for the figures in the manuscript "Unveiling the effect of Ni on the formation and structure of Earth’s inner core".

The .xlsx files can be read via Microsoft Excel.
DOI: 10.34740/kaggle/dsv/7308114
title: 2021 World Population (updated daily)
DOI: 10.34740/kaggle/dsv/7308127
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.6084/m9.figshare.24064128.v1
title: Supporting Information for manuscript "Apatite textures, elemental and isotopic compositions unmask the homogenizing process in silicic magma chambers".docx

description: This dataset includes supplemental figures and tables of apatite elemental and Nd-O isotopic data from the Late Permian Yuanyang A-type granites in SW Yunnan South China.
DOI: 10.57841/casdc.0003318
title: 晶体衍射数据
DOI: 10.6084/m9.figshare.21594387.v1
title: Examining the co-occurrences of human threats within terrestrial protected areas

description: Dataset used in publication: Martini et al. 2023. Examining the co-occurrences of human threats within terrestrial protected areas. Ambio.Data sources are all publicly available and are described in the article. This dataset is the aggregated and cleaned data that was used to run the Joint Species Distribution Model with the HMSC 3.0 package in R.
DOI: 10.5281/zenodo.7494714
title: When slow explorers are fast: personality-related differences in timing of migration in red knots Calidris canutus

description: Data used in the Article <strong>When slow explorers are fast: personality-related differences in timing of migration in red knots <em>Calidris canutus</em></strong> Diet file includes isotope signatures from breeding ground and wintering ground. The data was used to calculate arrival timing. Isotope_Redknot file includes carbon and nitrogen isotope of individual red knots that was used in the study. Knotdata includes meta data of individual red knots that is ring number, sex, primary moult score, capture date, and exploration scores.
DOI: 10.25345/c50g3h85p
title: MassIVE MSV000093739 - Constitutively active Gli2 co-IP/MS in ciliated and unciliated cells
title: Co-IP/MS of HA-Gli2 (P1-6A), the constitutively active mutant of Gli2 in NIH/3T3 Flp-in cells. The cells were either ciliated or depleted of cilia by expression of the dominant negative mutant of Kif3a (dnKif3a). Sample 8033:A is ciliated cells, sample 8033:B is unciliated cells.
DOI: 10.6084/m9.figshare.22796144
title: The Essex Risk-Based Policing Initiative: Evidence-Based Practices in Problem Analysis and Crime Prevention in the United Kingdom

description: This study draws insights from environmental criminology to implement a policing initiative focused on risky places and the micro-spatial attractors that create vulnerable settings for crime to emerge or persist in the town of Basildon. Evidence-based approaches to crime control have become more important within law enforcement approaches to crime control. Insights that have emerged from recent research on place-based approaches will serve as a central focus of this paper. The experimental approach taken to assess, implement and test the risk-based policing initiative incorporates lessons learned from similar US-based initiatives, and is the first study of its kind in the UK. Results show that community violence offences reduced significantly, and the target areas outperformed the control areas by over 47%. A cost-benefit analysis found this equates to a costs savings of £106,220 during the 6-month intervention period. This study demonstrates the value of evidence-based approaches to problem analysis and place-based crime prevention, and the generalizability of policing research in the US to UK settings. It also demonstrates how a researcher-practitioner implemented initiative from a large city in Missouri (US) was transferred to a small town in Essex (UK) solely <i>via</i> the in-house expertise of Essex Police personnel who reviewed published and open-access scientific literature, a true testament to “pracademics” and translational criminology.
DOI: 10.6084/m9.figshare.21594387
title: Examining the co-occurrences of human threats within terrestrial protected areas

description: "Martini et al_ExaminingThreatsCo-occurrences_Ambio.csv":Dataset used in publication: Martini et al. 2023. Examining the co-occurrences of human threats within terrestrial protected areas. Ambio.Data sources are all publicly available and are described in the article. This dataset is the aggregated and cleaned data that was used to run the Joint Species Distribution Model with the HMSC 3.0 package in R.<br>
DOI: 10.6084/m9.figshare.21594387.v2
title: Examining the co-occurrences of human threats within terrestrial protected areas

description: "Martini et al_ExaminingThreatsCo-occurrences_Ambio.csv":Dataset used in publication: Martini et al. 2023. Examining the co-occurrences of human threats within terrestrial protected areas. Ambio.Data sources are all publicly available and are described in the article. This dataset is the aggregated and cleaned data that was used to run the Joint Species Distribution Model with the HMSC 3.0 package in R."Martini et al_Ambio_TableS3.xlsx":Results from the Joint Species Distribution Model for the supported associations between threats within the Natura 2000 network. Only associations supported at 99% posterior probability are shown. The blank cells correspond to unsupported pairwise associations. This table provides the numerical values of Figure 3 in the manuscript. See methods in the manuscript for further details on the methodology.
DOI: 10.5281/zenodo.10440012
title: Col2creER;Confettihet_gE14.5_E18.5_litter154_m3

description: Raw data related to the foillowing manuscript:

https://www.biorxiv.org/content/10.1101/2023.11.14.567062v2
DOI: 10.5281/zenodo.10440013
title: Col2creER;Confettihet_gE14.5_E18.5_litter154_m3

description: Raw data related to the foillowing manuscript:

https://www.biorxiv.org/content/10.1101/2023.11.14.567062v2
DOI: 10.34740/kaggle/dsv/7308302
title: COVID Vaccination in World (updated daily)
DOI: 10.25625/xr95zw/fqazwm
title: Into adulthood - prenatal glucocorticoid exposure increases later life HPA axis activity in a wild primate.pdf

description: The hypothalamic-pituitary-adrenal (HPA) axis has a dual role in the biology of developmental plasticity in mammals including humans. To assess the timing effect, we quantified maternal HPA axis activity as a source of early adversity during three different gestational phases, and assessed its effect on offspring HPA axis activity in wild infant, juvenile, and adult macaques. Prenatal maternal glucocorticoid levels early in gestation had the same enhancing effect on offspring HPA axis activity in all offspring age classes. Together with previous results, this suggests that offspring are sensitive to the programming of this and perhaps other physiological systems especially very early during development, and that challenges experienced later, during the juvenile phase, may affect those systems less directly.
DOI: 10.25625/xr95zw/hifvta
title: MS HPA activity revised version - PREPRINT.pdf

description: The hypothalamic-pituitary-adrenal (HPA) axis has a dual role in the biology of developmental plasticity in mammals including humans — it provides offspring with cues to maternal physiological states, and it is the target of offspring developmental plasticity. To assess timing effects, we quantified maternal HPA axis activity as a source of early adversity during three developmental phases, and assessed its effect on offspring HPA axis activity in wild infant, juvenile, and adult macaques. Prenatal maternal glucocorticoid levels experienced early in gestation but not during lactation had similar enhancing effects on offspring HPA axis activity in all offspring age classes. Together with previous results, this small study suggests that offspring are sensitive to the fundamental programming of this and other physiological systems especially very early during development with effects on correlates of Darwinian fitness.
DOI: 10.25625/xr95zw/lb0pai
title: Into adulthood - prenatal glucocorticoids increase HPA axis activity in a wild primate

description: The hypothalamic-pituitary-adrenal (HPA) axis has a dual role in the biology of developmental plasticity in mammals including humans — it provides offspring with cues to maternal physiological states, and it is the target of offspring developmental plasticity. To assess timing effects, we quantified maternal HPA axis activity as a source of early adversity during three developmental phases, and assessed its effect on offspring HPA axis activity in wild infant, juvenile, and adult macaques. Prenatal maternal glucocorticoid levels experienced early in gestation but not during lactation had similar enhancing effects on offspring HPA axis activity in all offspring age classes. Together with previous results, this small study suggests that offspring are sensitive to the fundamental programming of this and other physiological systems especially very early during development with effects on correlates of Darwinian fitness.
DOI: 10.25625/xr95zw/wghtrz
title: HPA axis activity.pdf

description: :unav