cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5255/ukda-sn-856825
title: Government Communications Headquarters Hansard Parliamentary Debates, 1980-2017

description: These datasets are derived from a Hansard dataset created by Evan Odell (2021) (website). We filtered this large database to keep only those speeches containing the word “GCHQ”. Then we manually curated the database to include the whole debates associated with particular speeches. Finally, we we selected only those debates where GCHQ appears in the top 10% quantile of frequencies. The datasets have been curated for use in an article on 'Making Data Visualisations, Contesting Security'.
DOI: 10.5519/qd.8qt10cs4
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.25452/figshare.plus.24573268
title: Oxfordshire human bloodstream infection isolate sequence data

description: <b>If you use this data, please cite:</b> Matlock, William, and Lipworth, Samuel et al. "Enterobacterales plasmid sharing amongst human bloodstream infections, livestock, wastewater, and waterway niches in Oxfordshire, UK." <i>Elife</i> 12 (2023): e85302.This dataset contains sequence data for <i>n</i>=738 human bloodstream Enterobacterales isolates collected from Oxfordshire, UK in 2008-2018:<b>assemblies.tar.gz:</b> Hybrid assemblies for all isolates, totalling 2618 circularised contigs (chromosomes and plasmids)<b>long_reads.tar.gz:</b> ONT long-reads for all isolates<b>short_reads.tar.gz:</b> Illumina paired-end short-reads for all isolates<br>
DOI: 10.6084/m9.figshare.24599616.v3
title: Using synchronized brain rhythms to bias memory guided-decisions - eLife

description: Hello! :)These are the source data, which includes LFPs and behavioral data, for the eLife paper titled "Using synchronized brain rhythms to bias memory-guided decisions".Note that a companion NWB dataset, containing the raw BMI data, will be coming soon.These data are accompanied by code to reproduce all figures and statistics in the paper (GriffinLabCode/Manuscript Code/Published/Stout et al 2023 - Using synchronized brain rhythms to bias memory guided decisions/SCRIPT_sourceFigs.m at main · JohnStout/GriffinLabCode · GitHub)Please note that you will likely need the Griffin Lab pipeline to make use of some helper functions (GitHub - JohnStout/GriffinLabCode: Code used for processing and analyzing data from Amy Griffins laboratory at the University of Delaware)The instructions for using this pipeline are in the "1) READ ME.txt" file.It is important to note that some of the data used for this paper are from Hallock et al., 2016 (Ventral Midline Thalamus Is Critical for Hippocampal–Prefrontal Synchrony and Spatial Working Memory | Journal of Neuroscience (jneurosci.org)) and Stout and Griffin 2020 (Frontiers | Representations of On-Going Behavior and Future Actions During a Spatial Working Memory Task by a High Firing-Rate Population of Medial Prefrontal Cortex Neurons (frontiersin.org)).Contact: John Stout, john.j.stout.jr@gmail.com
DOI: 10.5519/qd.91obxcs5
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5732830 records)
DOI: 10.5281/zenodo.8272459
title: Adverse childhood events and clinical manifestation of anxiety symptoms in Greek adolescents during COVID-19 pandemic

description: <strong>Background: </strong>Adverse Childhood Experiences (ACEs) are linked to the development of Anxiety in Adolescence. According to recent studies, the pandemic COVID-19 is a novel ACE that has increased Anxiety among adolescents. This study aims to investigate the relationship between Adverse Childhood Experiences (ACEs) and COVID-19 in the development of Anxiety in Adolescence. <strong>Methods: </strong>A cross-sectional study with a community sample of 248 boys and girls aged 12 to 15 years (Mean: 13.50 years) from five High Schools in Eastern Attica were conducted. A total of four questionnaires were used: 1) Demographic Questionnaire, 2) State-Trait-Anxiety-Inventory for Children – STAIC, 3) Adverse Childhood Experiences Scale, and 4) COVID-19 Impact Scale. <strong>Results: </strong>The results demonstrated a strong correlation between the total number of adverse childhood experiences (ACEs) and Anxiety (Trait and State) in adolescence (Trait Anxiety: rho=.37, p0.001; State Anxiety: rho=.29, p0.001). Girls scored substantially higher on Trait Anxiety (U = 4353, p 0.001) and State Anxiety (U = 5822.5, p = 0.014) than boys. Girls also demonstrated more significant Anxiety than boys. The number of adverse childhood experiences was found to be significantly related to the impact of COVID-19 (=0.025, p 0.001). <strong>Conclusions: </strong>The present study's findings can be used to design and implement future effective, preventive, and therapeutic programs for adolescents with anxiety symptoms who were exposed to a variety of Adverse Childhood Experiences and the COVID-19 pandemic during their adolescence.
DOI: 10.5519/qd.e55cw3oi
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6073/pasta/63f0a885138167dae0abaea8aeaa63f4
title: INTERPNT Software for Mapping Trees Using Distance Measurements

description: The INTERPNT method can be used to produce accurate maps of trees based solely on tree diameter and tree-to-tree distance measurements. For additional details on the technique please see the published paper (Boose, E. R., E. F. Boose and A. L. Lezberg. 1998. A practical method for mapping trees using distance measurements. Ecology 79: 819-827). Additional information is contained in the documentation that accompanies the program. The Abstract from the paper is reproduced below. "Accurate maps of the locations of trees are useful for many ecological studies but are often difficult to obtain with traditional surveying methods because the trees hinder line of sight measurements. An alternative method, inspired by earlier work of F. Rohlf and J. Archie, is presented. This "Interpoint method" is based solely on tree diameter and tree-to-tree distance measurements. A computer performs the necessary triangulation and detects gross errors. The Interpoint method was used to map trees in seven long-term study plots at the Harvard Forest, ranging from 0.25 ha (200 trees) to 0.80 ha (889 trees). The question of accumulation of error was addressed though a computer simulation designed to model field conditions as closely as possible. The simulation showed that the technique is highly accurate and that errors accumulate quite slowly if measurements are made with reasonable care (e.g., average predicted location errors after 1,000 trees and after 10,000 trees were 9 cm and 15 cm, respectively, for measurement errors comparable to field conditions; similar values were obtained in an independent survey of one of the field plots). The technique requires only measuring tapes, a computer, and two or three field personnel. Previous field experience is not required. The Interpoint method is a good choice for mapping trees where a high level of accuracy is desired, especially where expensive surveying equipment and trained personnel are not available."
DOI: 10.5066/p9714q9y
title: Geologic map of science study area 1B, west Mangala Valles region of Mars

description: This map is one in a series of 1:500,000-scale geologic maps initiated by the National Aeronautic and Space Administration to investigate areas of particular scientific interest on Mars. The west Mangala Valles area merits detailed geologic study because it contains several small channels whose ages can be determined relative to geologic units that range in age from early (Noachian) to late (Amazonian) periods of Martian history. Because the small channels are of three ages and channels of each age are of a geomorphic type unique to that age, their study increases our understanding of the continuity of fluvial process on the evolutionary history of Mars. For these reasons, part of the area is a proposed-site for a sample-return mission to Mars.
DOI: 10.5066/p9h41udy
title: Macroinvertebrate communities in Shenandoah Valley streams, 2021

description: From 20 May - 8 June 2021, a Virginia Tech team of 2-3 sampled the macroinvertebrate community in 30 Shenandoah Valley streams (Virginia and West Virginia, USA) as part of a larger stream-health study including other teams who surveyed geomorphology, water quality, flow, temperature,fish community, and fish health at the same 30 streams. The macroinvertebrate community team also characterized the habitat units sampled for macroinvertebrates. At each stream, we sampled macroinvertebrates in two ways:1) in each stream we took 5 slack samples in riffles according to NAWQA protocol, and 2) we selected the most available and productive habitat where we used the Slack sampler to collect 5 additional samples in wood debris accumulations, undercut banks or leaf packs. Mesh size was 250 micrometer and samples were all taken for a known area. Other measurements included water temperature, electrical conductivity, and clarity, and percent of the reach comprising pool, riffle, and run habitats.
DOI: 10.5281/zenodo.10246380
title: PfamSDB, The structural database of Pfam seeds made by cutting the Full-Length Alphafold predicted structures

description: PfamSDB.tar contains the gzipped pdb file of Pfam seeds.
PfamSDB_cutFS.tar.gz contains the Foldseek database of Pfam seeds made by cutting the database of Full-length proteins.
DOI: 10.5281/zenodo.10246381
title: PfamSDB, The structural database of Pfam seeds made by cutting the Full-Length Alphafold predicted structures

description: PfamSDB.tar contains the gzipped pdb file of Pfam seeds.
PfamSDB_cutFS.tar.gz contains the Foldseek database of Pfam seeds made by cutting the database of Full-length proteins.
DOI: 10.6073/pasta/13c91d5d45a99d6e7984d6c331cae00b
title: EXPOS Model for Estimating Topographic Exposure to Wind

description: EXPOS is a simple model of topographic exposure to wind that utilizes digital elevation data to predict which points on a landscape are exposed to or protected from a given wind direction. The model was developed to approximate the effects of topography on hurricane wind flow at a landscape scale (~ 10 km). The model requires an accurate digital elevation map and a specified wind direction. Each point on the elevation map is then classified as protected or exposed, depending on whether or not it falls within the wind shadow cast by points upwind. The wind shadow is estimated by assuming that the wind bends downward no more than a fixed inflection angle from the horizontal as it passes over a height of land. The effects of topographic features beyond the margins of the input elevation map are of course not predicted by the model. For a given landscape and wind direction, predicted protected areas decrease in size as the inflection angle increases. Application of the model in studies of two recent hurricanes suggests that the probability of wind damage in protected areas also decreases as the inflection angle increases. An inflection angle of about 5 to 10 degrees was found to give good results. For more information on the EXPOS model, please see the published paper (Boose, E. R., D. R. Foster, and M. Fluet. 1994. Hurricane impacts to tropical and temperate forest landscapes. Ecological Monographs 64: 369-400). Additional information is contained in the documentation that accompanies the program.
DOI: 10.34740/kaggle/dsv/7100435
title: Prueba1
DOI: 10.5066/p9swp7zd
title: Geologic map of science study area 2, north Kasei Valles, Mars (MTM 25072 Quadrangle)

description: This map is one in a series of 1:500,000-scale geologic maps initiated by the National Aeronautics and Space Administration to investigate areas of particular scientific interest on Mars. The north Kasei Valles area (fig. 1) merits detailed geologic study because it contains part of a large channel system whose age can be determined relative to geologic units that range in age from early intermediate (Early Hesperian) to the very late (Late Amazonian) periods of Martian history. Also, many geomorphic features in the map area suggest changes in water level and multiple erosional events associated with the Kasei Valles system. Later erosional events are indicative of spring sapping; small-scale, ground-water runoff; and water-mobilized debris flow. Therefore, this large-scale mapping has increased our understanding of the history of hydrologic processes on Mars (Chapman and Scott, 1989). For these reasons, part of the area is a candidate site for a sample-return mission to the planet.
DOI: 10.6073/pasta/3d5bb5c50920437910e482a6c333f10c
title: HURRECON Model for Estimating Hurricane Wind Speed, Direction and Damage

description: HURRECON is a simple meteorological model that estimates hurricane surface wind speed and direction based on the track, size, and intensity of a hurricane and the surface type (land or water). The model also estimates Fujita-scale wind damage as a function of peak 1/4 mile wind speed and wind gust factor. Estimates can be generated for a single site or a rectangular region. The model is based on published empirical studies of many hurricanes. HURRECON can be used to study the impacts of individual hurricanes or to reconstruct the hurricane disturbance regime for a particular region. For more information on the most recent version of the model please see the published paper (Boose, E. R., K. E. Chamberlin and D. R. Foster. 2001. Landscape and regional impacts of hurricanes in New England. Ecological Monographs 71: 27-48). Additional information is contained in the documentation that accompanies the program.
DOI: 10.6073/pasta/5a4a0b97e159890b7d713d24a91d9452
title: Vegetation Patterns in Northeastern North America 1500-2000

description: Over the last few centuries, human activities have changed the landscape of northeastern North America from mostly forested to a patchwork of forest, farmland and logged areas, back in many areas to mostly forested. Meanwhile, there have been many rapid changes in the composition of the remaining forests, for example, the amounts of hemlock (Tsuga canadensis) and beech (Fagus grandifolia) have decreased while the amount of birch (Betula spp.) has increased. How stable have been the basic vegetational patterns under the onslaught of these landscape and compositional changes? In preliminary analyses, the assemblages of major tree taxa have been zoned for every other century, using optimal splitting by information content and other techniques, to study changes in vegetation groupings over the last 500 years. Several patterns seem to be emerging on a centennial scale: First, vegetation patterns were changing in the centuries before European colonization of the area. Second, the number of zones (vegetation types, based on pollen), was greater in 1700 and 1900 than in 1500 or now. Third, the zone boundaries have moved north from 1500 to the present. Further analyses, including several more data sets will be used to refine these conclusions and to suggest explanations for the changes.
DOI: 10.6073/pasta/0c24b76850f0efec3dd60c3023a3156e
title: Long-term Dynamics of Vegetation and Environment in Central Massachusetts 1000-2000

description: Historical and ecological data from north-central Massachusetts suggest that widespread and intensive human disturbance after European settlement led to a shift in forest composition and obscured regional patterns of species abundance. A paleoecological approach was required to place recent forest dynamics in a long-term context. Pollen and charcoal data from 11 small lakes in north-central Massachusetts were used to reconstruct local vegetation dynamics and fire histories across the region over the past 1000 years. The sites are located across an environmental gradient. Paleoecological data indicate that prior to European settlement, there was regional variation in forest composition corresponding to differences in climate, substrate, and fire regime. Oak, chestnut and hickory were abundant at low elevations, whereas hemlock, beech, sugar maple, and yellow birch were common at high elevations. Fire appears to have been more frequent and/or intense at lower elevations, maintaining high abundances of oak, and archaeological data suggest Native American populations were greater in these areas. A change in forest composition at higher elevations, around 550 years before present, may be related to the Little Ice Age (a period of variable climate), fire, and/or activity by Native Americans, and led to regional convergence in forest composition. After European settlement, forest composition changed markedly in response to human disturbance and there was a sharp increase in rates of vegetation change. Regional patterns were obscured further, leading to homogenization of broad-scale forest composition. There is no indication from the pollen data that forests are returning to pre-European settlement forest composition, and rates of vegetation change remain high, reflecting continuing disturbance to the landscape, despite regional reforestation.
DOI: 10.18739/a2gh9bb4n
title: High-Resolution Repeat Topography of Drifting Ice Floes in the Arctic Ocean from Terrestrial Laser Scanning Collected on the Multidisciplinary drifting Observatory for the Study of Arctic Climate Expedition

description: Data are available for download at: https://arcticdata.io/data/10.18739/A2GH9BB4N/ Many processes involving the fluxes of mass, energy, and momentum in Arctic sea ice impact and are impacted by the snow and ice topography. We conducted 42 days of measuring the snow and ice topography on approximately a 0.5 km squared drifting parcel of Arctic sea ice from 18 October 2019 to 9 May 2020 via Terrestrial Laser Scanning (TLS) on the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition. We have aligned the TLS data into an ice-fixed, lagrangian reference frame such that topographic changes (e.g. snow accumulation) can be observed on some ice floes for time periods up to six months. Using in-situ measurements, we have validated the vertical accuracy of the alignment to within a 95% confidence interval of plus or minus 0.011 m. These data can be used to investigate snow accumulation and redistribution, ice dynamics, surface roughness, and they can provide invaluable context for many other co-located measurements. These measurements were made as part of the snow and ice team work at MOSAiC. For an overview of all snow and ice team work please see: https://doi.org/10.1525/elementa.2021.000046. Additionally, a data descriptor paper providing additional details, figures, and tables related to this dataset will be published following publication of this dataset. This dataset supersedes https://doi.org/10.18739/A25717P9Q, https://doi.org/10.18739/A2901ZH4K, and https://doi.org/10.18739/A2DR2P98D. This dataset contains all information in those prior datasets and has superior alignment quality. These data are stored within a directory tree (see Methods section below). The following wget command will download the entire data archive, which is 350 GB. To download just a subdirectory (e.g., the 'Snow1' scan area, or an individual project): go to https://arcticdata.io/data/10.18739/A2GH9BB4N/, navigate to the desired subdirectory, and replace the url in the wget command with the url of the desired subdirectory. A processing library ('pydar') for working with these data is available at: https://zenodo.org/records/10152870
DOI: 10.5281/zenodo.10246816
title: The raw data needed for benchmarking the use of Foldseek for structure-based domain annotation

description: For more information refer to:https://github.com/Pooryamb/BenchmarkingFS
DOI: 10.5281/zenodo.10246815
title: The raw data needed for benchmarking the use of Foldseek for structure-based domain annotation

description: For more information refer to:https://github.com/Pooryamb/BenchmarkingFS
DOI: 10.5066/p97nuokk
title: Geologic map of the Elysium region of Mars

description: The region centered at Elysium Mons contains that second largest volcanic complex on Mars, surpassed in size by only the Tharsis complex. The Elysium region also has been a center of tectonic, fluvial, and mass-wasting activity. After degradation of ancient cratered terrain within the northern lowlands, volcanic rocks erupted from Elysium Mons, Hectas Tholus, and Albor Tholus in Elysium Planitia. The volcanic activity was associated with episodes of channel formation, faulting, and apparent volcano/ground-ice modifications of some areas. On this map sheet we portray, describe, and interpret the rich geologic history of the region.
DOI: 10.5281/zenodo.8285402
title: Tetrahedral meshes of male human torso and heart

description: 3D tetrahedral meshes of male human torso including the heart, suitable for finite element calculations of cardiac electrophysiology and electromechanics. This repository includes a variant with a subdivided right ventricular outflow tract (RVOT).


The cell array named `Material` included with each mesh labels the organs as tabulated in the file `material.tab`.
DOI: 10.5281/zenodo.8285403
title: Tetrahedral meshes of male human torso and heart

description: 3D tetrahedral meshes of male human torso including the heart, suitable for finite element calculations of cardiac electrophysiology and electromechanics. This repository includes a variant with a subdivided right ventricular outflow tract (RVOT).


The cell array named `Material` included with each mesh labels the organs as tabulated in the file `material.tab`.
DOI: 10.5066/p9iwglsg
title: Geologic map of the Pompeii Quadrangle (MTM 20057), Maja Valles region of Mars

description: The Pompeii quadrangle is in northern Maja Valles region between Lunae Palum to the west and Xanthe Terra to the east. Approximately two-thirds of the surface is a relatively smooth plain, and the other one-third is subdued, cratered, upland plateau. The crater Pompeii is the largest fresh crater in the quadrangle. The major interest in the map area is evidence of the relatively brief, catastrophic Maja outflow and its associated topographic modification of much of the area. The effects of erosion and deposition by the Maja flood are pronounced and are a chief part of the story; therefore, flood-modified terrain is divided in considerable detail. The stratigraphic units associated with the outflow are true rock units although they may be very thin.
DOI: 10.5066/p9idcz1y
title: Geologic map of the MTM 25057 and 25052 quadrangles, Kasei Valles region of Mars

description: Kasei Valles (fig. 1) make up the largest system of outflow channels on Mars and were a major contributor of water to Chryse Planitia. The walls and floors of the Kasei channels are terraced and grooved, closely resembling the channeled scablands of eastern Washington State that were formed by catastrophic floods probably lasting no more than a few days (Baker and Milton, 1974; Baker and Kochel, 1979). Evidence obtained from previous geologic mapping of parts of Kasei Valles (Chapman and Scott, 1989) was not conclusive as to whether water levels varied markedly during single flood and erosional event or whether flooding was episodic and marked by intermittent periods of scouring. This problem - whether one or several flood episodes occurred within individual water courses - has been a continuing issue in studies of Martian channel formation (Greeley and others, 1977). Recent large-scale geologic mapping (Tanaka and Chapman, 1990) of Mangala Valles, another large outflow channel system in the Memnonia region of Mars, shows deposits of two periods of flooding; the deposits are separated stratigraphically by a lava flow. In areas around the Chryse basin, geologic studies (for example, Greeley and others, 1977) indicate that more than one episode of channel formation occurred or, less likely, that flooding was of very long duration. Evidence disclosed by the present mapping indicates that flooding was episodic in Kasei Valles and probably occurred over protracted time intervals throughout the Hesperian Periods and possibly in the Early to Middle Amazonian.