cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/x8s7x3
title: Description of two new species of the genus Repetekiodes Amsel, 1961 (Lepidoptera: Pyralidae: Phycitinae) from Central Asia with faunal notes on the genus

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tsvetkov, Eugene, Trofimova, Tatyana (2024): Description of two new species of the genus Repetekiodes Amsel, 1961 (Lepidoptera: Pyralidae: Phycitinae) from Central Asia with faunal notes on the genus. Zootaxa 5424 (2): 176-188, DOI: 10.11646/zootaxa.5424.2.2, URL: http://dx.doi.org/10.11646/zootaxa.5424.2.2AbstractTwo new species, Repetekiodes serratalis sp. nov. and Repetekiodes turanella sp. nov. are described from Central Asia. The described species are well distinguished from their congeners by the genitalia and forewing pattern. A brief overview of the genus Repetekiodes Amsel, 1961 is given and original data on the distribution of Repetekiodes species are provided. DNA barcode data are presented for several species of the genus.
DOI: 10.15468/x3r6at
title: Integrating voice and phenotype in a revision of the brush cuckoo Cacomantis variolosus (Aves: Cuculidae) complex

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wu, Meng Yue, Schodde, Richard, Rheindt, Frank E. (2022): Integrating voice and phenotype in a revision of the brush cuckoo Cacomantis variolosus (Aves: Cuculidae) complex. Zootaxa 5091 (1): 69-106, DOI: 10.11646/zootaxa.5091.1.3AbstractBrush cuckoos of the Cacomantis variolosus complex, which range from Southeast Asia to Australia and the Solomon Islands, have undergone much taxonomic upheaval. Here we examine 389 vocal recordings, 832 skins, and records of brood parasitism and habitat partitioning to shed light on their species and subspecies taxonomy. Bioacoustic analysis revealed seven distinct vocal groups. Among morphological markers, shape and proportions of the tail were found to be supporting indicators, in addition to plumage tone and pattern. Integration of the resulting data set distinguished six species-level taxa within the complex: sepulcralis in the Philippines and Sundaland east to central Nusa Tenggara, virescens in Sulawesi and the Sula Archipelago, aeruginosus in the Moluccas, variolosus in east Nusa Tenggara, the Moluccas, north and east Australia, New Guinea and Bismarck Archipelago, blandus in the Admiralty Islands, and addendus in the Solomon Islands. Our review of infra-specific differentiation among species leads us to distinguish 13 subspecies. All taxa identified are listed in a summary classification of the complex. Taxon diversity is greatest in the Moluccas, where two habitat-partitioned species and five allopatric subspecies occur, of which one species and three subspecies are endemic to this region.
DOI: 10.15468/xqs36m
title: The annual fish genus Cynopoecilus (Cyprinodontiformes: Rivulidae): taxonomic revision, with descriptions of four new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article M., Wilson J. E. (2002): The annual fish genus Cynopoecilus (Cyprinodontiformes: Rivulidae): taxonomic revision, with descriptions of four new species. Ichthyol Explor. Freshwaters 13, No. 1: 11-24, DOI: 10.5281/zenodo.11130615
DOI: 10.15468/sxn4a6
title: Impact of increasing morphological information by micro-CT scanning on the phylogenetic placement of Darwin wasps (Hymenoptera, Ichneumonidae) in amber

description: This dataset contains the digitized treatments in Plazi based on the original journal article Viertler, Alexandra, Urfer, Karin, Schulz, Georg, Klopfstein, Seraina, Spasojevic, Tamara (2023): Impact of increasing morphological information by micro-CT scanning on the phylogenetic placement of Darwin wasps (Hymenoptera, Ichneumonidae) in amber. Swiss Journal of Palaeontology (30) 142 (1): 1-27, DOI: 10.1186/s13358-023-00294-2, URL: http://dx.doi.org/10.1186/s13358-023-00294-2AbstractThe correct interpretation of fossils and their reliable taxonomic placements are fundamental for understanding the evolutionary history of biodiversity. Amber inclusions often preserve more morphological information than compression fossils, but are often partially hidden or distorted, which can impede taxonomic identification. Here, we studied four new fossil species of Darwin wasps from Baltic and Dominican amber, using micro computed tomography (micro-CT) scans and 3D reconstructions to accurately interpret and increase the availability of morphological information. We then infer their taxonomic placement in a Bayesian phylogenetic analysis by combining morphological and molecular data of extant and fossil Darwin wasps and evaluate the impact and usefulness of the additional information from micro-CT scanning. The results show that although we gained significant morphological information from micro-CT scanning, especially concerning measurements and hidden dorsal and ventral structures, this did not impact subfamily-level placement for any of the four fossils. However, micro-CT scanning improved the precision of fossil placements at the genus level, which might be key in future dating and diversification analyses. Finally, we describe the four new fossil species as Rhyssa gulliveri sp. nov. in Rhyssinae, Triclistus levii sp. nov. in Metopiinae, Firkantus freddykruegeri gen. et. sp. nov. in Pimplinae and Magnocula sarcophaga gen. et sp. nov. in Phygadeuontinae.The first two species are the first known representatives of the subfamilies Rhyssinae and Metopiinae in amber. Keywords Fossils, RoguePlots, Parasitoids, Baltic Amber, Dominican Amber, Bayesian phylogenetic inference
DOI: 10.15468/dl.pgahs2
title: Occurrence Download

description: A dataset containing 369 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhynchophorus vulneratus"
 ]
}

 The dataset includes 369 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065799-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/5txfft
title: New Laboulbeniales from China (Ascomycota)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rossi, Walter, Leonardi, Marco (2020): New Laboulbeniales from China (Ascomycota). Cryptogamie, Mycologie 20 (1): 1-7, DOI: 10.5252/cryptogamie-mycologie2020v41a1, URL: http://dx.doi.org/10.5252/cryptogamie-mycologie2020v41a1ABSTRACTThe following six new species of Laboulbeniales from China are described: Laboulbenia assingii, sp. nov., parasitic on Mimogonus, sp. (Coleoptera, Staphylinidae); L. rugosa, sp. nov., parasitic on Amerizus (Tiruka), spp. (Coleoptera, Carabidae); Rhachomyces latellae, sp. nov., parasitic on an unidentified cavernicolous Carabidae; R. spiralis, sp. nov., parasitic on Guizhaphaenops, sp. (Coleoptera, Carabidae); R. toledanoi, sp. nov., parasitic on Amerizus (Tiruka) perraulti Deuve (Coleoptera, Carabidae); Stigmatomyces ferrugineus, sp. nov., parasitic on Desmometopa, sp. (Diptera, Milichiidae).
DOI: 10.5281/zenodo.18059463
title: Original Data for the Paper: 'A Dynamic Cooperative Control Method for Highly Manoeuvrable Unmanned Vehicle Fleets Based on Adaptive Multi-Mode Steering'
DOI: 10.5281/zenodo.18059464
title: Original Data for the Paper: 'A Dynamic Cooperative Control Method for Highly Manoeuvrable Unmanned Vehicle Fleets Based on Adaptive Multi-Mode Steering'
DOI: 10.6084/m9.figshare.30952755
title: Prospective associations between depressed mood and anhedonia: reciprocal influences or stress influence?

description: Depressed mood and anhedonia increase steadily through adolescence, and their associations become more tied at the transition to adulthood. However, it remains unclear whether the relationship is best explained by reciprocal influences or by a third variable. This longitudinal study investigated the co-development and bidirectional relationships between the two symptoms over three waves among first-year university students (Mean age = 18.24 years, SD = 0.80, 41% male) using latent growth models, parallel latent growth modelling and random-intercept cross-lagged panel models. The moderating effects of childhood maltreatment on their links were explored as well. In general, depressed mood and state/trait anhedonia decreased concomitantly over time after entering university. The majority of students (90%) decreased in depressed mood and anhedonia over time, while the remaining 10% progressively increased. At the between-person level, increases in depressed mood were accompanied by increases in state/trait anhedonia. However, these symptoms did not reciprocally predict each other at the within-person level. Multiple-group analyses found that depressed mood and state anhedonia reciprocally influenced among individuals with higher levels of childhood maltreatment. These findings emphasised that the core elements of major depressive disorder were not directly related to each other, but rather that moderating factors play a role.
DOI: 10.6084/m9.figshare.30952755.v1
title: Prospective associations between depressed mood and anhedonia: reciprocal influences or stress influence?

description: Depressed mood and anhedonia increase steadily through adolescence, and their associations become more tied at the transition to adulthood. However, it remains unclear whether the relationship is best explained by reciprocal influences or by a third variable. This longitudinal study investigated the co-development and bidirectional relationships between the two symptoms over three waves among first-year university students (Mean age = 18.24 years, SD = 0.80, 41% male) using latent growth models, parallel latent growth modelling and random-intercept cross-lagged panel models. The moderating effects of childhood maltreatment on their links were explored as well. In general, depressed mood and state/trait anhedonia decreased concomitantly over time after entering university. The majority of students (90%) decreased in depressed mood and anhedonia over time, while the remaining 10% progressively increased. At the between-person level, increases in depressed mood were accompanied by increases in state/trait anhedonia. However, these symptoms did not reciprocally predict each other at the within-person level. Multiple-group analyses found that depressed mood and state anhedonia reciprocally influenced among individuals with higher levels of childhood maltreatment. These findings emphasised that the core elements of major depressive disorder were not directly related to each other, but rather that moderating factors play a role.
DOI: 10.15468/5pqsaz
title: A new Late Viséan ammonoid assemblage from the Anti-Atlas (Early Carboniferous, Morocco)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Korn, Dieter (2025): A new Late Viséan ammonoid assemblage from the Anti-Atlas (Early Carboniferous, Morocco). European Journal of Taxonomy 987: 249-263, DOI: 10.5852/ejt.2025.987.2873, URL: https://europeanjournaloftaxonomy.eu/index.php/ejt/article/download/2873/13049Abstract. A new, unusually composed Late Viséan ammonoid assemblage is described from the Gara el Itima (eastern Anti-Atlas, Morocco). In addition to the species Goniatites rodioni, the assemblage includes very large specimens of Merocanites and specimens of the new genus Xenoglyphioceras gen. nov., which is interpreted to occupy a phylogenetic position between Beyrichoceras and Ferganoceras. The new species Merocanites consequius sp. nov. and Xenoglyphioceras eidos gen. et sp. nov. are described.
DOI: 10.15468/dl.4ydpf3
title: Occurrence Download

description: A dataset containing 5824085 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 5824085 records from 1364 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065785-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18059451
title: GEMSTONE Research Data: PCR Images and Protocols

description: The images and protocols in this file represent the routine PCR experiments conducted in the GEMSTONE Project to determine the genotypes of the transgenic animals used throughout the project.
DOI: 10.5281/zenodo.18059452
title: GEMSTONE Research Data: PCR Images and Protocols

description: The images and protocols in this file represent the routine PCR experiments conducted in the GEMSTONE Project to determine the genotypes of the transgenic animals used throughout the project.
DOI: 10.15468/nhvfkm
title: Cerambycidae (Coleoptera) biodiversity in French Guiana: description of a new genus and four new species in Acanthocinini (Lamiinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Santos-Silva, Antonio, Bezark, Larry G., Tavakilian, Gérard L., Audureau, Alain (2025): Cerambycidae (Coleoptera) biodiversity in French Guiana: description of a new genus and four new species in Acanthocinini (Lamiinae). Zootaxa 5701 (4): 465-482, DOI: 10.11646/zootaxa.5701.4.4, URL: https://doi.org/10.11646/zootaxa.5701.4.4AbstractOne new genus and four new species of Acanthocinini are described from French Guiana: Baryssinus giuglarisi sp. nov.; Nyssodrysternum angulatum sp. nov.; Styloleptus flavomaculatus sp. nov.; and Sternacutoides albomaculatus, gen. nov., sp. nov. Notes on the definition of Styloleptus Dillon, 1956 are provided.
DOI: 10.15468/dl.g4ebbc
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((128.32891 26.99946,128.54901 26.99946,128.54901 27.08746,128.32891 27.08746,128.32891 26.99946))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Scleractinia"
 ]
}

 The dataset includes 146 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065800-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/vzf22x
title: Hidden Brazilian Amazon diversity: four new species, redescription and notes on natural history of Termitozophilus Silvestri, 1901 (Coleoptera: Staphylinidae: Aleocharinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Silva, Ruan Felipe Da, Zilberman, Bruno, Carvalho-Filho, Fernando Da Silva (2022): Hidden Brazilian Amazon diversity: four new species, redescription and notes on natural history of Termitozophilus Silvestri, 1901 (Coleoptera: Staphylinidae: Aleocharinae). Zootaxa 5209 (5): 501-534, DOI: 10.11646/zootaxa.5209.5.1AbstractThe genus Termitozophilus Silvestri (Coleoptera: Staphylinidae: Aleocharinae: Corotocini) is composed of three species that are associated with termite nests of the genus Cornitermes Wasmann in South America. Although this termite genus is widespread in the Amazon region, the species of the rove beetle genus Termitozophilus associated with it are less known. In this paper, we describe four new species of Termitozophilus species from the Brazilian Oriental Amazon. Furthermore, we provide information on natural history, post-imaginal growth, behavior, and a taxonomic key to all valid species.
DOI: 10.6084/m9.figshare.29566816
title: Renal tubular VMP1 protects against acute kidney injury via modulating autophagy and autophagy-independent pathway

description: Macroautophagy/autophagy activation protects renal proximal tubular epithelial cells (PTECs) against acute kidney injury (AKI) induced by various challenges. The mechanism that regulates autophagy in PTECs, however, remains incompletely understood. Here, we report that VMP1 (vacuole membrane protein 1) plays an essential role in enabling PTECs to maintain high autophagic flow under AKI conditions. VMP1 in PTECs is strongly upregulated in AKI patients but not chronic kidney disease patients. The rapid elevation of VMP1 expression in PTECs during AKI is validated in mouse AKI models induced by cisplatin or ischemia-reperfusion injury (IRI). PTECs-specific <i>vmp1-</i>knockout mice (<i>vmp1-</i>cKO) display more severe renal injuries when challenged with cisplatin or IRI. In line with this, aging <i>vmp1-</i>cKO mice spontaneously develop defective calcium metabolism and display significant tubular damage. In contrast, adenovirus-mediated <i>Vmp1</i> expression in renal tubular rescues IRI or cisplatin-induced renal tubular injury. Mechanistically, the level and distribution pattern of VMP1 are associated with the autophagy markers MAP1LC3/LC3 and SQSTM1, and VMP1 facilitates the formation of renal tubular cell autophagosomes. <i>VMP1</i> deficiency also results in the accumulation of lipid droplets in renal tubular cells. Our studies thus reveal a critical role of VMP1 in protecting against AKI via facilitating tubular cell autophagic flux and lipid metabolism.
DOI: 10.6084/m9.figshare.29566816.v1
title: Renal tubular VMP1 protects against acute kidney injury via modulating autophagy and autophagy-independent pathway

description: Macroautophagy/autophagy activation protects renal proximal tubular epithelial cells (PTECs) against acute kidney injury (AKI) induced by various challenges. The mechanism that regulates autophagy in PTECs, however, remains incompletely understood. Here, we report that VMP1 (vacuole membrane protein 1) plays an essential role in enabling PTECs to maintain high autophagic flow under AKI conditions. VMP1 in PTECs is strongly upregulated in AKI patients but not chronic kidney disease patients. The rapid elevation of VMP1 expression in PTECs during AKI is validated in mouse AKI models induced by cisplatin or ischemia-reperfusion injury (IRI). PTECs-specific <i>vmp1-</i>knockout mice (<i>vmp1-</i>cKO) display more severe renal injuries when challenged with cisplatin or IRI. In line with this, aging <i>vmp1-</i>cKO mice spontaneously develop defective calcium metabolism and display significant tubular damage. In contrast, adenovirus-mediated <i>Vmp1</i> expression in renal tubular rescues IRI or cisplatin-induced renal tubular injury. Mechanistically, the level and distribution pattern of VMP1 are associated with the autophagy markers MAP1LC3/LC3 and SQSTM1, and VMP1 facilitates the formation of renal tubular cell autophagosomes. <i>VMP1</i> deficiency also results in the accumulation of lipid droplets in renal tubular cells. Our studies thus reveal a critical role of VMP1 in protecting against AKI via facilitating tubular cell autophagic flux and lipid metabolism.
DOI: 10.15468/dl.564h4j
title: Occurrence Download

description: A dataset containing 3025 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.continent = 'ASIA'
 AND occurrence.countrycode IN ('TW', 'CN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (CAST(occurrence.taxonkey AS INTEGER) = 44 OR CAST(occurrence.acceptedtaxonkey AS INTEGER) = 44 OR CAST(occurrence.kingdomkey AS INTEGER) = 44 OR CAST(occurrence.phylumkey AS INTEGER) = 44 OR CAST(occurrence.classkey AS INTEGER) = 44 OR CAST(occurrence.orderkey AS INTEGER) = 44 OR CAST(occurrence.familykey AS INTEGER) = 44 OR CAST(occurrence.genuskey AS INTEGER) = 44 OR CAST(occurrence.specieskey AS INTEGER) = 44)
 AND (occurrence."year" &gt;= 2025 AND occurrence."year" &lt;= 2025)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 3025 records were derived from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065796-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29924822
title: Inhibition of UBE2N promotes the clearance of mutant HTT (huntingtin) in HD knock-in mice

description: Accumulation of misfolded proteins leads to many neurodegenerative diseases that can be treated by lowering or removing mutant proteins. Huntington disease (HD) is characterized by the accumulation of ubiquitinated mutant HTT (huntingtin) in the central nervous system. Ubiquitination of the misfolded proteins, a common feature of the neurodegenerative diseases, is mediated by the different lysine residues on ubiquitin. We previously discovered that the age-dependent increase of UBE2N (ubiquitin conjugating enzyme E2 N) exacerbated the accumulation of misfolded HTT and amyloid proteins, accompanied by the elevation of K63 ubiquitination. Pharmacological inhibition of UBE2N could ameliorate the amyloid deposition. However, the effect of UBE2N suppression on HTT aggregate clearance has remained unknown. In the current work, we demonstrate that selectively suppressing UBE2N, with antisense oligonucleotides or small-molecular inhibitors, increased removal of HTT aggregates by proteasome degradation in the striatum of HD knock-in mice. We also identified two novel ubiquitin specific peptidases, USP29 and USP49, that participated in the clearance of HTT aggregates, via accelerating K48-mediated ubiquitin-proteasome function. Our findings provide a potential pharmacological approach to treat neurodegeneration caused by mutant HTT. <b>Abbreviation</b>: AD: Alzheimer disease; ALP: autophagy-lysosomal pathway; AMC: 7-Amino-4-Methylcoumarin; ASO: antisense oligonucleotide; Aβ: amyloid β; BafA1: bafilomycin A<sub>1</sub>; DEG: differentially expressed gene; DMSO: dimethyl sulfoxide; E2: ubiquitin-conjugating; E3: ubiquitin-ligating; EGFP: enhanced green fluorescent protein; HD: Huntington disease; HTT: huntingtin; KI: knock-in; SDS: sodium dodecyl sulfate; UPS: ubiquitin-proteasome system; UBE2N: ubiquitin conjugating enzyme E2 N; USP: ubiquitin-specific peptidase.