cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12166686
title: DISPLACE-2024 Dataset
title: The Second DISPLACE Challenge data

description: Inspired by the previous session of DISPLACE 2023 challenge, we have  launched the DISPLACE 2024 challenge  (https://displace2024.github.io/). Compared to the first DISPLACE challenge, the current challenge  includes an additional track on automatic speech recognition (ASR) in code-switched multi-accent  conversational scenarios along with speaker and language diarization tracks. We  release  supervised data for exploring new directions on multilingual multispeaker, multi accent conversational data. To the best of our knowledge, no publicly available dataset matches the diverse characteristics observed in the DISPLACE dataset, including code-mixing/switching, natural overlaps, reverberation, and noise. For this challenge, a natural multi-lingual, multi-speaker conversational dataset will be distributed for development and evaluation purposes. There will be no training data given and the participants will be free to use any resource for training the models. The challenge reflects the theme of Interspeech 2024 - "Speech and Beyond" in its true sense.The dataset can be obtained by orgainisers by sending the request form and duly signed the terms and condtionsLink for registration for obtaining the data : Registration Link
DOI: 10.5281/zenodo.12166687
title: DISPLACE-2024 Dataset
title: The Second DISPLACE Challenge data

description: Inspired by the previous session of DISPLACE 2023 challenge, we have  launched the DISPLACE 2024 challenge  (https://displace2024.github.io/). Compared to the first DISPLACE challenge, the current challenge  includes an additional track on automatic speech recognition (ASR) in code-switched multi-accent  conversational scenarios along with speaker and language diarization tracks. We  release  supervised data for exploring new directions on multilingual multispeaker, multi accent conversational data. To the best of our knowledge, no publicly available dataset matches the diverse characteristics observed in the DISPLACE dataset, including code-mixing/switching, natural overlaps, reverberation, and noise. For this challenge, a natural multi-lingual, multi-speaker conversational dataset will be distributed for development and evaluation purposes. There will be no training data given and the participants will be free to use any resource for training the models. The challenge reflects the theme of Interspeech 2024 - "Speech and Beyond" in its true sense.The dataset can be obtained by orgainisers by sending the request form and duly signed the terms and condtionsLink for registration for obtaining the data : Registration Link
DOI: 10.5281/zenodo.14097187
title: DISPLACE-2024 Dataset
title: The Second DISPLACE Challenge data

description: Inspired by the previous session of DISPLACE 2023 challenge, we have  launched the DISPLACE 2024 challenge  (https://displace2024.github.io/). Compared to the first DISPLACE challenge, the current challenge  includes an additional track on automatic speech recognition (ASR) in code-switched multi-accent  conversational scenarios along with speaker and language diarization tracks. We  release  supervised data for exploring new directions on multilingual multispeaker, multi accent conversational data. To the best of our knowledge, no publicly available dataset matches the diverse characteristics observed in the DISPLACE dataset, including code-mixing/switching, natural overlaps, reverberation, and noise. For this challenge, a natural multi-lingual, multi-speaker conversational dataset will be distributed for development and evaluation purposes. There will be no training data given and the participants will be free to use any resource for training the models. The challenge reflects the theme of Interspeech 2024 - "Speech and Beyond" in its true sense.The dataset can be obtained by orgainisers by sending the request form and duly signed the terms and condtionsLink for registration for obtaining the data : Registration Link
DOI: 10.6084/m9.figshare.27683202
title: onset_2021.csv

description: This dataset contains minute-resolution meteorological and environmental measurements from an observation tower in Innisfree Village, located in a small valley at the foot of the Blue Ridge Mountains in Virginia, USA. Variables include wind speed, gust speed, wind direction, temperature, relative humidity, solar radiation, atmospheric pressure, voltage, current, and rainfall. Data were collected continuously throughout 2021.
DOI: 10.6084/m9.figshare.27683202.v1
title: onset_2021.csv

description: This dataset contains minute-resolution meteorological and environmental measurements from an observation tower in Innisfree Village, located in a small valley at the foot of the Blue Ridge Mountains in Virginia, USA. Variables include wind speed, gust speed, wind direction, temperature, relative humidity, solar radiation, atmospheric pressure, voltage, current, and rainfall. Data were collected continuously throughout 2021.
DOI: 10.5281/zenodo.7584533
title: The Holocene Arctic Biodiversity Indicators Database

description: The Holocene Arctic Biodiversity Indicators Database (HABID) is a database of time-series indicators of changes in Arctic biodiversity through time. The database contains the resulting metadata dataset of a systematic map conducted to identify temporal indicators of Arctic terrestrial and freshwater biodiversity.
DOI: 10.15468/dl.83vhkr
title: Occurrence Download

description: A dataset containing 2656 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Spain",
 "TaxonKey is Porzana porzana (Linnaeus, 1766)",
 "Year 2019-2024"
 ]
}

 The dataset includes 2656 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011954-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4egq8x
title: Occurrence Download

description: A dataset containing 47698 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "OccurrenceStatus is Present",
 "TaxonKey is Porphyrio porphyrio (Linnaeus, 1758)",
 "Year 2019-2024"
 ]
}

 The dataset includes 47698 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011953-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27683217.v1
title: Rad_Means_2020.csv

description: This dataset provides one-minute resolution measurements of solar and thermal radiation along with battery and panel temperature values, collected from an observation tower in Innisfree Village, Virginia. The variables include minimum battery voltage, panel temperature, incoming and outgoing shortwave radiation, and incoming and outgoing longwave radiation, offering insights into the diurnal and seasonal radiation patterns in the valley environment of the Blue Ridge Mountains throughout 2020.
DOI: 10.6084/m9.figshare.27683217
title: Rad_Means_2020.csv

description: This dataset provides one-minute resolution measurements of solar and thermal radiation along with battery and panel temperature values, collected from an observation tower in Innisfree Village, Virginia. The variables include minimum battery voltage, panel temperature, incoming and outgoing shortwave radiation, and incoming and outgoing longwave radiation, offering insights into the diurnal and seasonal radiation patterns in the valley environment of the Blue Ridge Mountains throughout 2020.
DOI: 10.15468/dl.xbhefe
title: Occurrence Download

description: A dataset containing 2546002 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than 50000",
 "Year is 2023",
 "DecimalLongitude is greater than or equal to 7.0",
 "DecimalLongitude is less than or equal to 15.5",
 "DecimalLatitude is greater than or equal to 54.5",
 "DecimalLatitude is less than or equal to 58.0"
 ]
}

 The dataset includes 2546002 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011927-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ug5yda
title: Occurrence Download

description: A dataset containing 48536 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "OccurrenceStatus is Present",
 "TaxonKey is Rallus aquaticus Linnaeus, 1758",
 "Year 2019-2024"
 ]
}

 The dataset includes 48536 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011955-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27686517.v1
title: Supplementary Material for: Gadoxetic Acid-Enhanced Magnetic Resonance Imaging Features Can Predict Immune-Excluded Phenotype of Hepatocellular Carcinoma

description: Introduction: Immunotherapy is the first-line treatment for intermediate-advanced stage hepatocellular carcinoma (HCC), although its outcomes vary. This study aimed to identify imaging biomarkers of immunotherapy susceptibility linked to gadoxetic acid-enhanced magnetic resonance imaging (EOB-MRI) and immune phenotypes, particularly immune-excluded phenotypes, with a tumor immune barrier.
Methods: We performed immunohistochemical staining with a CD8+ antibody, and samples were classified into immune-inflamed, -intermediate, -excluded, and -ignored phenotypes. We assessed EOB-MRI findings obtained from 104 patients who underwent hepatectomy for HCC and evaluated the relationship between MRI findings and immune phenotype. Spatial transcriptome analysis of tumor tissues in each immune phenotype was performed to characterize the MRI findings. For validation, we analyzed the treatment effect on 60 nodules in another cohort of 27 patients who received combined immunotherapy using anti-programmed death-ligand 1 and anti-vascular endothelial growth factor (VEGF) antibodies.
Results: HCCs with rim arterial phase hyperenhancement (APHE) (odds ratio [OR] 17.3 P=0.009), peritumoral enhancement on the arterial phase (OR 8.6, P&lt;0.004), and intermediate intensity on the hepatobiliary phase (HBP) measured with a visual 3-point scale (OR 28.2, P=0.002) were associated with immune-excluded phenotype, where tumors tended to be larger and of the single nodular type with extranodular growth and confluent multinodular rather than the simple nodular type. Spatial transcriptome analysis revealed a spatial relationship among cytotoxic T lymphocytes, VEGF signals, and cancer-associated fibroblasts at the tumor-invasive margins in this phenotype. From the validation study, nodules with any one of these three imaging findings had a significantly prolonged time to-nodular progression (P=0.007, median not reached vs. 226 days).
Conclusion: HCCs with rim APHE, peritumoral enhancement on arterial phase, and intermediate intensity on HBP with visual 3-point scale could be non-invasive biomarkers to predict the immune-excluded phenotype with tumor immune barrier. These HCCs were most likely to respond to the combined immunotherapy.
DOI: 10.15468/dl.5s87tz
title: Occurrence Download

description: A dataset containing 8737 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rorippa islandica (Oeder) Borbás"
 ]
}

 The dataset includes 8737 records from 426 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011957-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jkm6mz
title: Occurrence Download

description: A dataset containing 2036940 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Amaryllidaceae)"
 ]
}

 The dataset includes 2036940 records from 4218 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019000-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7zebs
title: Occurrence Download

description: A dataset containing 461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carum carvi",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 461 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022334-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpv3b9
title: Occurrence Download

description: A dataset containing 637 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carum carvi",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 637 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022336-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17212400
title: Data and R scripts for 'The amount of reachable habitat determines population fate' (Argote et al., 2025)

description: This Zenodo repository contains all datasets and R scripts used in the article "The amount of reachable habitat determines population fate" (Argote et al., 2025, Ecography).

Files include:





Datasets: main and supplementary CSV files, plus R objects with landscape and trajectory data.




R scripts: analyses for the main article and supplementary materials.



All scripts assume datasets are in the same folder and can be run in R to fully reproduce the results from the article.

License: CC-BY 4.0
DOI: 10.6084/m9.figshare.30225084.v1
title: Additional file 2 of Cohesin regulation of genome organization in mature granule neurons in the mouse cerebellum

description: Additional file 2 (XLSX 143 KB)
DOI: 10.6084/m9.figshare.30225073.v1
title: Additional file 7 of Cataloging the potential functional diversity of Cacna1e splice variants using long-read sequencing

description: Additional file 7. Full BLAST results of Cacna1e splice variants.
DOI: 10.15468/dl.5pdruf
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aster hispidus",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 17 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022338-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30225079.v1
title: Additional file 9 of Cataloging the potential functional diversity of Cacna1e splice variants using long-read sequencing

description: Additional file 9. Multiple sequence alignment between splice variants identified in this study and Cacna1e splice variants from NCBI.
DOI: 10.6084/m9.figshare.30225058.v1
title: Additional file 3 of Cataloging the potential functional diversity of Cacna1e splice variants using long-read sequencing

description: Additional file 3. Transdecoder predicted amino acid sequences for all splice variants.
DOI: 10.6084/m9.figshare.30225064.v1
title: Additional file 5 of Cataloging the potential functional diversity of Cacna1e splice variants using long-read sequencing

description: Additional file 5. 154 Cacna1e splice variants with 4 pore-forming domains (predicted by CDD). This file can be used to subset from Additional File 3 or as an input for IsoViz, our isoform visualization tool.
DOI: 10.6084/m9.figshare.30225052.v1
title: Additional file 1 of Cataloging the potential functional diversity of Cacna1e splice variants using long-read sequencing

description: Additional file 1. FLAIR generated FASTA file of all Cacna1e splice variants.
DOI: 10.6084/m9.figshare.30225055.v1
title: Additional file 2 of Cataloging the potential functional diversity of Cacna1e splice variants using long-read sequencing

description: Additional file 2. FLAIR generated counts table for all Canca1e splice variants.
DOI: 10.6084/m9.figshare.30225061.v1
title: Additional file 4 of Cataloging the potential functional diversity of Cacna1e splice variants using long-read sequencing

description: Additional file 4. All Cacna1e splice variants with a predicted CDD domain.
DOI: 10.6084/m9.figshare.30225048.v1
title: Additional file 5 of Endometriosis-associated infertility alters the microRNA signatures of cumulus cells with a particularly pronounced effect in oocytes that failed fertilization

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.30225067.v1
title: Additional file 6 of Cataloging the potential functional diversity of Cacna1e splice variants using long-read sequencing

description: Additional file 6. Donor and acceptor scores using MaxEntScan.
DOI: 10.6084/m9.figshare.30225024.v1
title: Additional file 1 of Fruiting body-associated Pseudomonas contact triggers ROS-mediated perylenequinone biosynthesis in Shiraia mycelium culture

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30224982.v1
title: Additional file 5 of Identification and experimental validation of biomarkers associated with the endocannabinoid system in major depressive disorder

description: Additional file 5
DOI: 10.6084/m9.figshare.30224970.v1
title: Additional file 1 of Identification and experimental validation of biomarkers associated with the endocannabinoid system in major depressive disorder

description: Additional file 1
DOI: 10.6084/m9.figshare.30224976.v1
title: Additional file 3 of Identification and experimental validation of biomarkers associated with the endocannabinoid system in major depressive disorder

description: Additional file 3
DOI: 10.6084/m9.figshare.30224979.v1
title: Additional file 4 of Identification and experimental validation of biomarkers associated with the endocannabinoid system in major depressive disorder

description: Additional file 4
DOI: 10.6084/m9.figshare.30224985.v1
title: Additional file 6 of Identification and experimental validation of biomarkers associated with the endocannabinoid system in major depressive disorder

description: Additional file 6
DOI: 10.6084/m9.figshare.30224986.v1
title: Additional file 2 of PKSmart: an open-source computational model to predict intravenous pharmacokinetics of small molecules

description: Supplementary material 2.
DOI: 10.6084/m9.figshare.30224973.v1
title: Additional file 2 of Identification and experimental validation of biomarkers associated with the endocannabinoid system in major depressive disorder

description: Additional file 2
DOI: 10.6084/m9.figshare.30224932.v1
title: Additional file 2 of A comprehensive analysis of Atlantic salmon gonad and pituitary transcriptomes identifies novel players in sexual maturation

description: Additional file 2. Supplementary_file2_Rscripts.R.
DOI: 10.6084/m9.figshare.30224929.v1
title: Additional file 1 of A comprehensive analysis of Atlantic salmon gonad and pituitary transcriptomes identifies novel players in sexual maturation

description: Additional file 1. Supplementary_file1_scripts.sh.
DOI: 10.6084/m9.figshare.30224899.v1
title: Additional file 1 of Epigenetic signatures on plasma cell-free DNA to detect kidney allograft rejection in a non-invasive way: development of a 10-plex digital PCR assay

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30224902.v1
title: Additional file 2 of Epigenetic signatures on plasma cell-free DNA to detect kidney allograft rejection in a non-invasive way: development of a 10-plex digital PCR assay

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30224890.v1
title: Additional file 4 of Identification of urinary bacterial genes as biomarkers for non-invasive diagnosis of renal lupus

description: Supplementary Material 4. Code used to perform bioinformatics analyses.
DOI: 10.6084/m9.figshare.30224880.v1
title: Additional file 4 of Optimized high-throughput whole-genome sequencing workflow for surveillance of influenza A virus

description: Additional file 4: Supplementary Table 3 Sequencing metrics summary underlying Fig. 1C. This table provides global sequencing read statistics and classification of viral and non-viral reads for serially diluted samples amplified using the protocols of Zhou et al. [11, 12], Rambo-Martin et al. [15], and the current optimized protocol.
DOI: 10.6084/m9.figshare.30224883.v1
title: Additional file 5 of Optimized high-throughput whole-genome sequencing workflow for surveillance of influenza A virus

description: Additional file 5: Supplementary Table 4 Sequencing metrics summary underlying Fig. 2B. This table provides global sequencing read statistics, the number of reads classified as viral and non-viral, and reads mapped per genomic segment with the dual-barcoding approach.
DOI: 10.6084/m9.figshare.30224886.v1
title: Additional file 6 of Optimized high-throughput whole-genome sequencing workflow for surveillance of influenza A virus

description: Additional file 6: Supplementary Table 5 Sequencing metrics summary underlying Fig. 2D. This table provides global sequencing read statistics and the number of reads classified as viral and non-viral for each IAV-positive clinical sample sequenced with either the single- or dual-barcoding approach.
DOI: 10.6084/m9.figshare.30224887.v1
title: Additional file 3 of Identification of urinary bacterial genes as biomarkers for non-invasive diagnosis of renal lupus

description: Supplementary Material 3. Supplementary Table 3. Statistically significant KOs between control and non-renal SLE group (padj &lt; 0.05, LDA &gt; 1.0). Supplementary Table 4. Statistically significant KOs between control and renal SLE group (padj &lt; 0.05, LDA &gt; 1.0). Supplementary Table 4. Statistically significant KOs between non-renal and renal SLE group (padj &lt; 0.05, LDA &gt; 1.0).
DOI: 10.6084/m9.figshare.30224874.v1
title: Additional file 2 of Optimized high-throughput whole-genome sequencing workflow for surveillance of influenza A virus

description: Additional file 2: Supplementary Table 1 Metadata of RNA samples extracted from IAV-positive clinical samples or virus isolates of avian, swine, and human origin.
DOI: 10.6084/m9.figshare.30224877.v1
title: Additional file 3 of Optimized high-throughput whole-genome sequencing workflow for surveillance of influenza A virus

description: Additional file 3: Supplementary Table 2 Barcoded primers table. The table includes all the barcoded primers designed and used in this study. The underlined nucleotides at the end of each primer sequence correspond to the conserved nucleotides at each IAV segment end (i.e., Uni12 and Uni13).
DOI: 10.6084/m9.figshare.30224857.v1
title: Additional file 3 of Genome of the green-head ant, Rhytidoponera metallica, reveals mechanisms of toxin evolution in a genetically hyper-diverse eusocial species

description: Additional file 3. File with the aligned amino acid sequences of the coding regions of R. metallica ectatotoxin loci.
DOI: 10.6084/m9.figshare.30224860.v1
title: Additional file 4 of Genome of the green-head ant, Rhytidoponera metallica, reveals mechanisms of toxin evolution in a genetically hyper-diverse eusocial species

description: Additional file 4. File with the aligned nucleotide sequences of the coding regions of R. metallica ectatotoxin loci.