cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6262517
title: Additional file 1: of Expression profiling of cell-intrinsic regulators in the process of differentiation of human iPSCs into retinal lineages

description: Primers. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6262517.v1
title: Additional file 1: of Expression profiling of cell-intrinsic regulators in the process of differentiation of human iPSCs into retinal lineages

description: Primers. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6262499
title: Additional file 1: of Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep

description: Table S1. Conserved and novel miRNAs detected in lambs and adults. (XLS 82Â kb)
DOI: 10.6084/m9.figshare.6262499.v1
title: Additional file 1: of Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep

description: Table S1. Conserved and novel miRNAs detected in lambs and adults. (XLS 82Â kb)
DOI: 10.6084/m9.figshare.6262448
title: Additional file 3: of Characterisation of proteins in excretory/secretory products collected from salmon lice, Lepeophtheirus salmonis

description: Table S3. E/S products unique to pre-adult stage. Data includes accession number, protein name, Proteinscape scores, no. of peptides matched, sequence coverage, signal peptide prediction and peptide sequence. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.6262448.v1
title: Additional file 3: of Characterisation of proteins in excretory/secretory products collected from salmon lice, Lepeophtheirus salmonis

description: Table S3. E/S products unique to pre-adult stage. Data includes accession number, protein name, Proteinscape scores, no. of peptides matched, sequence coverage, signal peptide prediction and peptide sequence. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.6262430
title: Additional file 2: of Characterisation of proteins in excretory/secretory products collected from salmon lice, Lepeophtheirus salmonis

description: Table S2. E/S products unique to adult female stage. Data includes accession number, protein name, Proteinscape scores, no. of matched peptides, sequence coverage, signal peptide prediction and peptide sequence. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.6262430.v1
title: Additional file 2: of Characterisation of proteins in excretory/secretory products collected from salmon lice, Lepeophtheirus salmonis

description: Table S2. E/S products unique to adult female stage. Data includes accession number, protein name, Proteinscape scores, no. of matched peptides, sequence coverage, signal peptide prediction and peptide sequence. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.6262403
title: Additional file 1: of Characterisation of proteins in excretory/secretory products collected from salmon lice, Lepeophtheirus salmonis

description: Table S1. E/S products common to both adult female and pre-adult stages. Data includes accession number, protein name, Proteinscape scores, no. of matched peptides, sequence coverage, signal peptide prediction and peptide sequence. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.6262403.v1
title: Additional file 1: of Characterisation of proteins in excretory/secretory products collected from salmon lice, Lepeophtheirus salmonis

description: Table S1. E/S products common to both adult female and pre-adult stages. Data includes accession number, protein name, Proteinscape scores, no. of matched peptides, sequence coverage, signal peptide prediction and peptide sequence. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.6262382
title: Additional file 5: of Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community

description: Virome species table. (CSV 73Â kb)
DOI: 10.6084/m9.figshare.6262382.v1
title: Additional file 5: of Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community

description: Virome species table. (CSV 73Â kb)
DOI: 10.6084/m9.figshare.6262367
title: Additional file 4: of Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community

description: Fasta sequence file of most abundant OTUs only detected in amniotic fluid. (FA 5Â kb)
DOI: 10.6084/m9.figshare.6262367.v1
title: Additional file 4: of Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community

description: Fasta sequence file of most abundant OTUs only detected in amniotic fluid. (FA 5Â kb)
DOI: 10.6084/m9.figshare.6262352
title: Additional file 3: of Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community

description: 16S operational taxonomic unit table. (CSV 40Â kb)
DOI: 10.6084/m9.figshare.6262352.v1
title: Additional file 3: of Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community

description: 16S operational taxonomic unit table. (CSV 40Â kb)
DOI: 10.6084/m9.figshare.6262349
title: MOESM1 of Peripheral vascular disease assessment in the lower limb: a review of current and emerging non-invasive diagnostic methods

description: Additional file 1: Table S1. Summary of the performance of the discussed noninvasive methods used for PVD diagnosis.
DOI: 10.6084/m9.figshare.6262349.v1
title: MOESM1 of Peripheral vascular disease assessment in the lower limb: a review of current and emerging non-invasive diagnostic methods

description: Additional file 1: Table S1. Summary of the performance of the discussed noninvasive methods used for PVD diagnosis.
DOI: 10.6084/m9.figshare.6262331
title: Additional file 2: of Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community

description: Metadata associated with all samples used in this study. (TXT 1Â kb)
DOI: 10.6084/m9.figshare.6262331.v1
title: Additional file 2: of Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community

description: Metadata associated with all samples used in this study. (TXT 1Â kb)
DOI: 10.6084/m9.figshare.12893909.v1
title: R0189_20171004a_videos

description: Rat 0189, skilled reaching data collected on 10/4/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12893909
title: R0189_20171004a_videos

description: Rat 0189, skilled reaching data collected on 10/4/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.6262229
title: Registration practices of clinical trials in rhinosinusitis: a systematic review

description: This is the data used for this project.
DOI: 10.6084/m9.figshare.6262229.v1
title: Registration practices of clinical trials in rhinosinusitis: a systematic review

description: This is the data used for this project.
DOI: 10.6084/m9.figshare.6262139
title: The small airway epithelium as a target for the adverse pulmonary effects of silver nanoparticle inhalation

description: Experimental modeling to identify specific inhalation hazards for nanomaterials has in the main focused on <i>in vivo</i> approaches. However, these models suffer from uncertainties surrounding species-specific differences and cellular targets for biologic response. In terms of pulmonary exposure, approaches which combine ‘inhalation-like’ nanoparticulate aerosol deposition with relevant human cell and tissue air–liquid interface cultures are considered an important complement to <i>in vivo</i> work. In this study, we utilized such a model system to build on previous results from <i>in vivo</i> exposures, which highlighted the small airway epithelium as a target for silver nanoparticle (AgNP) deposition. RNA-SEQ was used to characterize alterations in mRNA and miRNA within the lung. Organotypic-reconstituted 3D human primary small airway epithelial cell cultures (SmallAir) were exposed to the same spark-generated AgNP and at the same dose used <i>in vivo</i>, in an aerosol-exposure air–liquid interface (AE-ALI) system. Adverse effects were characterized using lactate, LDH release and alterations in mRNA and miRNA. Modest toxicological effects were paralleled by significant regulation in gene expression, reflective mainly of specific inflammatory events. Importantly, there was a level of concordance between gene expression changes observed <i>in vitro</i> and <i>in vivo</i>. We also observed a significant correlation between AgNP and mass equivalent silver ion (Ag<sup>+</sup>) induced transcriptional changes in SmallAir cultures. In addition to key mechanistic information relevant for our understanding of the potential health risks associated with AgNP inhalation exposure, this work further highlights the small airway epithelium as an important target for adverse effects.
DOI: 10.6084/m9.figshare.6262139.v1
title: The small airway epithelium as a target for the adverse pulmonary effects of silver nanoparticle inhalation

description: Experimental modeling to identify specific inhalation hazards for nanomaterials has in the main focused on <i>in vivo</i> approaches. However, these models suffer from uncertainties surrounding species-specific differences and cellular targets for biologic response. In terms of pulmonary exposure, approaches which combine ‘inhalation-like’ nanoparticulate aerosol deposition with relevant human cell and tissue air–liquid interface cultures are considered an important complement to <i>in vivo</i> work. In this study, we utilized such a model system to build on previous results from <i>in vivo</i> exposures, which highlighted the small airway epithelium as a target for silver nanoparticle (AgNP) deposition. RNA-SEQ was used to characterize alterations in mRNA and miRNA within the lung. Organotypic-reconstituted 3D human primary small airway epithelial cell cultures (SmallAir) were exposed to the same spark-generated AgNP and at the same dose used <i>in vivo</i>, in an aerosol-exposure air–liquid interface (AE-ALI) system. Adverse effects were characterized using lactate, LDH release and alterations in mRNA and miRNA. Modest toxicological effects were paralleled by significant regulation in gene expression, reflective mainly of specific inflammatory events. Importantly, there was a level of concordance between gene expression changes observed <i>in vitro</i> and <i>in vivo</i>. We also observed a significant correlation between AgNP and mass equivalent silver ion (Ag<sup>+</sup>) induced transcriptional changes in SmallAir cultures. In addition to key mechanistic information relevant for our understanding of the potential health risks associated with AgNP inhalation exposure, this work further highlights the small airway epithelium as an important target for adverse effects.
DOI: 10.6084/m9.figshare.6261992
title: TrabajoFinalMetodoscsv.csv

description: Este Dataset es el archivo utilizado para analizar datos de trabajadores en días festivos y con ello ayudar a la persona que trabaja con el departamento de Recursos humanos y nomina a tomar decisiones.A su vez este trabajo permitirá al profesor Carlos Rodriguez C. evaluar al equipo de la materia de MC, ya que lo aprendido durante el curso y más, es aplicado en datos reales para la toma de decisiones.
DOI: 10.6084/m9.figshare.6261992.v1
title: TrabajoFinalMetodoscsv.csv

description: Este Dataset es el archivo utilizado para analizar datos de trabajadores en días festivos y con ello ayudar a la persona que trabaja con el departamento de Recursos humanos y nomina a tomar decisiones.A su vez este trabajo permitirá al profesor Carlos Rodriguez C. evaluar al equipo de la materia de MC, ya que lo aprendido durante el curso y más, es aplicado en datos reales para la toma de decisiones.
DOI: 10.6084/m9.figshare.6261908
title: Gaussian Process Modeling Using the Principle of Superposition

description: Partial differential equation (PDE) models of physical systems with initial and boundary conditions are often solved numerically via a computer code called the simulator. To study the dependence of the solution on a functional input, the input is expressed as a linear combination of a finite number of basis functions, and the coefficients of the bases are varied. In such studies, Gaussian process (GP) emulators can be constructed to reduce the amount of simulations required from time-consuming simulators. For linear initial-boundary value problems (IBVPs) with functional inputs as additive terms in the PDE, initial conditions, or boundary conditions, the IBVP solution is theoretically a linear function of the coefficients conditional on all other inputs, which is a result called the principle of superposition. Since numerical errors cause deviation from linearity and nonlinear IBVPs are widely solved in practice, we generalize the result to account for nonlinearity. Based on this generalized result, we propose mean and covariance functions for building GP emulators that capture the approximate conditional linear effect of the coefficients. Numerical simulations demonstrate the substantial improvements in prediction performance achieved with the proposed emulator. Matlab codes for reproducing the results in this article are available in the online supplement.
DOI: 10.6084/m9.figshare.6261908.v2
title: Gaussian Process Modeling Using the Principle of Superposition

description: Partial differential equation (PDE) models of physical systems with initial and boundary conditions are often solved numerically via a computer code called the simulator. To study the dependence of the solution on a functional input, the input is expressed as a linear combination of a finite number of basis functions, and the coefficients of the bases are varied. In such studies, Gaussian process (GP) emulators can be constructed to reduce the amount of simulations required from time-consuming simulators. For linear initial-boundary value problems (IBVPs) with functional inputs as additive terms in the PDE, initial conditions, or boundary conditions, the IBVP solution is theoretically a linear function of the coefficients conditional on all other inputs, which is a result called the principle of superposition. Since numerical errors cause deviation from linearity and nonlinear IBVPs are widely solved in practice, we generalize the result to account for nonlinearity. Based on this generalized result, we propose mean and covariance functions for building GP emulators that capture the approximate conditional linear effect of the coefficients. Numerical simulations demonstrate the substantial improvements in prediction performance achieved with the proposed emulator. Matlab codes for reproducing the results in this article are available in the online supplement.
DOI: 10.6084/m9.figshare.6261908.v1
title: Gaussian Process Modeling Using the Principle of Superposition

description: Partial differential equation (PDE) models of physical systems with initial and boundary conditions are often solved numerically via a computer code called the simulator. To study the dependence of the solution on a functional input, the input is expressed as a linear combination of a finite number of basis functions, and the coefficients of the bases are varied. In such studies, Gaussian process (GP) emulators can be constructed to reduce the amount of simulations required from time-consuming simulators. For linear initial-boundary value problems (IBVPs) with functional inputs as additive terms in the PDE, initial conditions or boundary conditions, the IBVP solution is theoretically a linear function of the coefficients conditional on all other inputs, which is a result called the principle of superposition. Since numerical errors cause deviation from linearity and nonlinear IBVPs are widely solved in practice, we generalize the result to account for nonlinearity. Based on this generalized result, we propose mean and covariance functions for building GP emulators that capture the approximate conditional linear effect of the coefficients. Numerical simulations demonstrate the substantial improvements in prediction performance achieved with the proposed emulator. Matlab codes for reproducing the results in this paper are available in the online supplement.
DOI: 10.6084/m9.figshare.6260849
title: Biocrust_Cflux

description: Excised biocrust was watered to field capacity and carbon flux in the light and dark was measured with a Licor 6400 on each sample under varying temperatures in a growth chamber.<br><br>NPP, GPP, RE were collected with eddyflux towers, and soil respiration was collected at some sites as well.<br>
DOI: 10.6084/m9.figshare.6260849.v1
title: Biocrust_Cflux

description: Excised biocrust was watered to field capacity and carbon flux in the light and dark was measured with a Licor 6400 on each sample under varying temperatures in a growth chamber.<br>
DOI: 10.6084/m9.figshare.6260849.v2
title: Biocrust_Cflux

description: Excised biocrust was watered to field capacity and carbon flux in the light and dark was measured with a Licor 6400 on each sample under varying temperatures in a growth chamber.<br><br>NPP, GPP, RE were collected with eddyflux towers, and soil respiration was collected at some sites as well.<br>
DOI: 10.6084/m9.figshare.6260822
title: DockerPedia Dataset v1.0-beta.1

description: DockerPedia is a resource that allows user inspect Docker images before downloading and deploy the within a host. Normally Docker images are like a black box in which users do not really know what they are deploying. User only know the name of the image and the name of the main package within the image. With this resource now it is possible to inspect the Docker images stored at DockerHub before deploying them.
DOI: 10.6084/m9.figshare.6260822.v1
title: DockerPedia Dataset v1.0-beta.1

description: DockerPedia is a resource that allows user inspect Docker images before downloading and deploy the within a host. Normally Docker images are like a black box in which users do not really know what they are deploying. User only know the name of the image and the name of the main package within the image. With this resource now it is possible to inspect the Docker images stored at DockerHub before deploying them.
DOI: 10.6084/m9.figshare.6260732
title: Matlab code, raw data and figure plots from "CLASP suppresses microtubule catastrophes through a single TOG domain"

description: Matlab code, raw data and figure plots from the paper: <i>CLASP suppresses microtubule catastrophes through a single TOG domain</i>Amol Aher, Maurits Kok, Ashwani Sharma, Ankit Rai, Natacha Olieric, Ruddi Rodriguez-Garcia, Eugene A. Katrukha, Tobias Weinert, Vincent Olieric, Lukas C. Kapitein, <br>Michel O. Steinmetz, Marileen Dogterom and Anna AkhmanovaDev Cell. 2018 Jul 2; 46(1): 40–58.e8.<br><br>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6035287/<br><br>
DOI: 10.6084/m9.figshare.6260732.v1
title: Matlab code, raw data and figure plots from "CLASP suppresses microtubule catastrophes through a single TOG domain"

description: Matlab code, raw data and figure plots from the paper: <i>CLASP suppresses microtubule catastrophes through a single TOG domain</i>Amol Aher, Maurits Kok, Ashwani Sharma, Ankit Rai, Natacha Olieric, Ruddi Rodriguez-Garcia, Eugene A. Katrukha, Tobias Weinert, Vincent Olieric, Lukas C. Kapitein, <br>Michel O. Steinmetz, Marileen Dogterom and Anna Akhmanova<br>to be published...
DOI: 10.6084/m9.figshare.6260654
title: HEMOBP

description: Blood pressure (BP) varies significantly in chronic hemodialysis (HD) patients, and dramatic variation in blood pressure during HD treatment is a well-recognized risk factor for increased mortality. BP monitoring is a fundamental part of HD treatment and is essential to patient safety during HD treatment. This study is based on a large stream of HD parameters collected from dialysis equipment connected to the Vital Info Portal (VIP) gateway and linked with demographic data stored in the hospital information system. We also provide a bioinformatics analysis system for real-time BP prediction. The accuracy was greater than 80% in the predicted error range of 15% and 20mmHg of true BP. The database supports applications including the recommendation that dialysis settings be personalized for each patient. The information is also delivered to the doctors to preempt BP fluctuation when a patient undergoes HD treatment.<br>
DOI: 10.6084/m9.figshare.6260654.v1
title: Hemrec_VIP.csv

description: Blood pressure (BP) varies significantly in chronic hemodialysis (HD) patients, and dramatic variation in blood pressure during HD treatment is a well-recognized risk factor for increased mortality. BP monitoring is a fundamental part of HD treatment and is essential to patient safety during HD treatment. This study is based on a large stream of HD parameters collected from dialysis equipment connected to the Vital Info Portal (VIP) gateway and linked with demographic data stored in the hospital information system. We also provide a bioinformatics analysis system for real-time BP prediction. The accuracy was greater than 80% in the predicted error range of 15% and 20mmHg of true BP. The database supports applications including the recommendation that dialysis settings be personalized for each patient. The information is also delivered to the doctors to preempt BP fluctuation when a patient undergoes HD treatment.<br>
DOI: 10.6084/m9.figshare.6260555.v2
title: Mitochondrial Ca2+ Flux Modulates Spontaneous Electrical Activity in Ventricular Cardiomyocytes

description: Ca<sup>2+</sup> release from sarcoplasmic reticulum (SR) is known to contribute to automaticity via the cytoplasmic Na<sup>+</sup>-Ca<sup>2+</sup> exchanger (NCX). Mitochondria participate in Ca<sup>2+</sup> cycling. We studied the role of mitochondrial Ca<sup>2+</sup> flux in spontaneous electrical activity.
DOI: 10.6084/m9.figshare.6260549
title: MCDCalc Values for Chemical Reactivity

description: Data set of MCDCalc Descriptors for Chiral Brønsted Acid-Catalyzed Enantioselective α-Amidoalkylation Reactions
DOI: 10.6084/m9.figshare.6260549.v1
title: MCDCalc Values for Enantioselective α-Amidoalkylation Reac.

description: Data set of MCDCalc Descriptors for Chiral Brønsted Acid-Catalyzed Enantioselective α-Amidoalkylation Reactions
DOI: 10.6084/m9.figshare.6260549.v2
title: MCDCalc Values for Enantioselective α-Amidoalkylation Reac.

description: Data set of MCDCalc Descriptors for Chiral Brønsted Acid-Catalyzed Enantioselective α-Amidoalkylation Reactions
DOI: 10.6084/m9.figshare.6260549.v4
title: MCDCalc Values for Chemical Reactivity and Biological Activity

description: Data set of MCDCalc Descriptors for Chiral Brønsted Acid-Catalyzed Enantioselective α-Amidoalkylation Reactions
DOI: 10.6084/m9.figshare.6260516
title: Additional file 3: of Neurophysiologic tests screening cognitive impairment in idiopathic intracranial hypertension patients

description: Spread sheet of neurophysiologic tests. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6260516.v1
title: Additional file 3: of Neurophysiologic tests screening cognitive impairment in idiopathic intracranial hypertension patients

description: Spread sheet of neurophysiologic tests. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6260444
title: Dataset from the paper "Perceptions of climate change across the Canadian forest sector: the key factors of institutional and geographical environment" (PLOS ONE)

description: Dataset containing answers from 974 respondents to a survey about perceptions on climate change across the Canadian forest sector. It contains individual responses about (i) general statements about climate change and its potential impacts (6 statements), (ii) impacts of climate change on forest ecosystems (7 statements), and (iii) current forest management practices and the need to adapt to climate change (5 statements). The responses to each of these questions are stored in a Likert scale ranging from "strongly disagree" to "strongly agree".