cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7092361
title: Results Dataset - Neonatal MRI Lung Segmentation and 3D Features

description: We developed an ensemble of deep convolutional neural networks to automatically and with high consistency perform neonatal lung segmentation from MRI sequences. A 3D representation of the lung and a clustering method to separate left and right lobes were implemented to calculate volumetric features. In addition, ML Models for severity prediction of Bronchopulmonary Dysplasia (BPD) are implemented as an applied example of the use of MRI lung volumetric features for disease prognosis. This dataset comprises the resulting performances and features per MRI-sequence.
description: {"references": ["https://doi.org/10.1101/2021.08.06.21261648"]}
DOI: 10.5281/zenodo.7859856
title: Results Dataset - Neonatal MRI Lung Segmentation and 3D Features

description: We developed an ensemble of deep convolutional neural networks to automatically and with high consistency perform neonatal lung segmentation from MRI sequences. A 3D representation of the lung and a clustering method to separate left and right lobes were implemented to calculate volumetric features. In addition, ML Models for severity prediction of Bronchopulmonary Dysplasia (BPD) are implemented as an applied example of the use of MRI lung volumetric features for disease prognosis. This dataset comprises the resulting performances and features per MRI-sequence.
description: {"references": ["https://doi.org/10.1101/2021.08.06.21261648"]}
DOI: 10.5281/zenodo.7860574
title: Results Dataset - Neonatal MRI Lung Segmentation and 3D Features

description: We developed an ensemble of deep convolutional neural networks to automatically and with high consistency perform neonatal lung segmentation from MRI sequences. A 3D representation of the lung were implemented to calculate volumetric features. In addition, ML Models for severity prediction of Bronchopulmonary Dysplasia (BPD) are implemented as an applied example of the use of MRI lung volumetric features for disease prognosis. This dataset comprises the resulting performances and features per MRI-sequence.
description: {"references": ["https://doi.org/10.1101/2021.08.06.21261648"]}
DOI: 10.6084/m9.figshare.25037617
title: Dataset_S6.xlsx from The causes of species richness patterns among clades

description: Two major types of species richness patterns are spatial (e.g. the latitudinal diversity gradient) and clade-based (e.g. the dominance of angiosperms among plants). Studies have debated whether clade-based richness patterns are explained primarily by larger clades having faster rates of species accumulation (speciation minus extinction over time; diversification-rate hypothesis) or by simply being older (clade-age hypothesis). However, these studies typically compared named clades of the same taxonomic rank, such as phyla and families. This study design is potentially biased against the clade-age hypothesis, since clades of the same rank may be more similar in age than randomly selected clades. Here, we analyse the causes of clade-based richness patterns across the tree of life using a large-scale, time-calibrated, species-level phylogeny and random sampling of clades. We find that within major groups of organisms (animals, plants, fungi, bacteria, archaeans), richness patterns are most strongly related to clade age. Nevertheless, weaker relationships with diversification rates are present in animals and plants. These overall results contrast with similar large-scale analyses across life based on named clades, which showed little effect of clade age on richness. More broadly, these results help support the overall importance of time for explaining diverse types of species richness patterns.
DOI: 10.57745/0obfpw
title: Inventaris CS-BE GPBE.xlsx

description: This data describes the current type of packaging materials used by Greenyard i.e. the technical specifications (e.g. barrier properties, mechanical properties, …)
DOI: 10.6084/m9.figshare.11406162
title: MOESM4 of A comprehensive proteomics profiling identifies NRP1 as a novel identity marker of human bone marrow mesenchymal stromal cell-derived small extracellular vesicles

description: Additional file 4: Table S1. hBM-MSC characterization for surface identity markers, differentiation potential to mesodermal lineage and population doublings.
DOI: 10.5281/zenodo.10202742
title: N-SI-121 spectra

description: HDF5 file containing experiment N-SI-121 spectra (gamma, gamma-gamma, etc.), used for data analysis for publication. Experiment used O-18 beam on a thick Au-197 target, and was primarly focused on fission of the compound nucleus (Fr-215).

HDF5 file has a flat structure of collection of 2D spectra:



Eloc - Energy vs. location (detector number)

bgo_time - BGO anti-compton energy vs. time realtive to the beam pulse

gM - gamma energy in Germanium detectors vs. multiplicity

gM_delayed - as above but for delayed gamma emission 

ge_time - Ge detector energy vs. time relative to the beam pulse

gg - all gamma-gamma coincidences (Ge detectors)

gg_delayed - as above but only delayed coincidences

gg_prompt - as above but only prompt coincidences

la_time - LaBr3 detectors vs. time relative to the beam pulse

tloc - time relative to the beam pulse vs. detector location

totM_delayed - total energy (sum of all kind of detectors), delayed radiation only

totM_prompt- total energy (sum of all kind of detectors), prompt radiation only


Each event is 400 ns long, beam pulse is set to position 40 ns. Delayed radiation is in range 80-350 ns relative to beam pulse, prompt is 35-65 ns.
DOI: 10.5281/zenodo.10202743
title: N-SI-121 spectra

description: HDF5 file containing experiment N-SI-121 spectra (gamma, gamma-gamma, etc.), used for data analysis for publication. Experiment used O-18 beam on a thick Au-197 target, and was primarly focused on fission of the compound nucleus (Fr-215).

HDF5 file has a flat structure of collection of 2D spectra:



Eloc - Energy vs. location (detector number)

bgo_time - BGO anti-compton energy vs. time realtive to the beam pulse

gM - gamma energy in Germanium detectors vs. multiplicity

gM_delayed - as above but for delayed gamma emission 

ge_time - Ge detector energy vs. time relative to the beam pulse

gg - all gamma-gamma coincidences (Ge detectors)

gg_delayed - as above but only delayed coincidences

gg_prompt - as above but only prompt coincidences

la_time - LaBr3 detectors vs. time relative to the beam pulse

tloc - time relative to the beam pulse vs. detector location

totM_delayed - total energy (sum of all kind of detectors), delayed radiation only

totM_prompt- total energy (sum of all kind of detectors), prompt radiation only


Each event is 400 ns long, beam pulse is set to position 40 ns. Delayed radiation is in range 80-350 ns relative to beam pulse, prompt is 35-65 ns.
DOI: 10.6084/m9.figshare.11406195
title: MOESM9 of A comprehensive proteomics profiling identifies NRP1 as a novel identity marker of human bone marrow mesenchymal stromal cell-derived small extracellular vesicles

description: Additional file 9: Table S6. Peptide groups for Neuropilin-1 (accession Q68DN3) detailing the 11 peptides identified with the SequestHT algorithm in Proteome Discoverer 2.2.
DOI: 10.6084/m9.figshare.11406195.v1
title: MOESM9 of A comprehensive proteomics profiling identifies NRP1 as a novel identity marker of human bone marrow mesenchymal stromal cell-derived small extracellular vesicles

description: Additional file 9: Table S6. Peptide groups for Neuropilin-1 (accession Q68DN3) detailing the 11 peptides identified with the SequestHT algorithm in Proteome Discoverer 2.2.
DOI: 10.5281/zenodo.10683611
title: Aqua-planet simulation with prescribed wave number-1 sea surface temperature

description: This dataset includes the Aqua-planet simulations outputs related to the paper "Deep winter mixed layer anchored by the meandering Antarctic Circumpolar Current: Cross-basin variations". The simulations aim to investigate the surface heat flux pattern in response to the sea surface temperature (SST) of a wave number-1 structure, mimicking the circumpolar meanders of the Antarctic Circumpolar Current.

The model employed is the Community Atmospheric Model version 4 (CAM4), which is the atmospheric component of the Community Earth System Model (CESM) version 1.2.2. Further information to reproduce the aqua-planet simulation of CAM4 can be found at https://www.cesm.ucar.edu/models/simple/fixed-sst-aqua#cam4. 

The dataset here includes monthly outputs of two sets of simulation, an idealized wave number-1 SST ("SST_WN1") and a more realistic SST ("SST_WN1-A"). More details can be found in section 2d of the paper.
DOI: 10.5281/zenodo.10683610
title: Aqua-planet simulation with prescribed wave number-1 sea surface temperature

description: This dataset includes the Aqua-planet simulations outputs related to the paper "Deep winter mixed layer anchored by the meandering Antarctic Circumpolar Current: Cross-basin variations". The simulations aim to investigate the surface heat flux pattern in response to the sea surface temperature (SST) of a wave number-1 structure, mimicking the circumpolar meanders of the Antarctic Circumpolar Current.

The model employed is the Community Atmospheric Model version 4 (CAM4), which is the atmospheric component of the Community Earth System Model (CESM) version 1.2.2. Further information to reproduce the aqua-planet simulation of CAM4 can be found at https://www.cesm.ucar.edu/models/simple/fixed-sst-aqua#cam4. 

The dataset here includes monthly outputs of two sets of simulation, an idealized wave number-1 SST ("SST_WN1") and a more realistic SST ("SST_WN1-A"). More details can be found in section 2d of the paper.
DOI: 10.15468/ce6qx7
title: 2007-2022_nibr_simpl_lc

description: 2007-2022_nibr_simpl_lc data
DOI: 10.15468/gqpmrs
title: Lichen specimens of Iwate Prefectural Museum

description: Lichen specimens deposited in Iwate Prefectural Museum (part).
DOI: 10.23728/b2share.a1c76e16d565459d935b0ae904c5f1db
title: Grassland Dynamics - Hochschwab (Austria) - 2001, 2008, 2015

description: species cover according to the GLORIA Field Manual: https://gloria.ac.at/downloads/Manual_5thEd_ENG.pdf (p 38);
on each of four summits, the four 1x1m corner plots of a 3x3m grid in each cardinal direction 5m below the highest summit point (GLORIA Field Manual, p 31) at Hochschwab (Austria)

abundance according to the GLORIA Field Manual: https://gloria.ac.at/downloads/Manual_5thEd_ENG.pdf: 
1=very rare, 2=rare, 3=rare-scattered, 4=scattered, 5=scattered-common, 6=common, 7=common-dominant, 8=dominant (cf. p 41f.)
dimless;each of four summits is divided in 4 summit area sections from 0-5 m below the highest summit point and from 5-10 m below the highest summit point (GLORIA Field Manual, p 34) at Hochschwab (Austria)
description: https://doi.org/10.2777/867331
DOI: 10.57745/jjyaga
title: FAIRCHAIN Inventory suppliers_materials.xlsx

description: This data describes which packaging companies are contacted to potentially supply the types of stand-up pouch with spout in a sustainable packaging material with focus on bio-based and/or recyclable materials.
The pouch materials need to meet the performance requirements to be able to be filled aseptically and meet the barrier requirements for the shelf life of the packed food products (apple sauce and cheese sauce)
DOI: 10.6084/m9.figshare.25250248
title: Lateritic soil permeability coefficient and shear strength prediction-repo

description: Predictive models were developed in this study using soft computing techniques including artificial neural network (ANN), M5P model tree (M5P) and random forest (RF) to predict laterite permeability coefficient and shear strength from index properties (specific gravity, linear shrinkage, liquid limit, plasticity index, fine sand content, and fines content). To achieve this goal, an experimental dataset obtained from laboratory analyses of three hundred laterite samples was divided into a model and a gaging dataset. The model dataset contains two hundred and forty data points, which were divided into training, testing and validation datasets, with 70% for training and 15% each for testing and validation of the proposed models. The gaging dataset contains sixty data points, which were used to evaluate and compare the proposed models’ performances with the existing models using the coefficient of determination, root mean squared error, mean absolute percentage error, and mean absolute error. The proposed models outperformed the existing models and provided satisfactory performance, with ANN models presenting the best performance, followed by RF and then M5P for both the permeability coefficient and the shear strength cases. This implies that the ANN models are the most reliable estimation for the prediction of lateritic soils’ permeability coefficient and shear strength. Thus, they can be used for practical purposes.
DOI: 10.6084/m9.figshare.25256965.v1
title: Characterizing Software Architectural Metrics for Continuous Compliance in the Automotive Domain

description: The artifact contains an .xlsx table. The table shows all the metrics that were selected for the purposes of the paper. Each metric has a name and the relative title of the paper from which it was extracted. There are then 8 columns that represent the characteristics of the framework for evaluating the metrics based on Continuous Compliance. The last column shows the score of the metric calculated based on the characteristics of the framework.
DOI: 10.5281/zenodo.10686812
title: Interaction of GAT1 with sodium ions: from efficient recruitment to stabilisation of substrate and conformation

description: This dataset is linked to the eLife paper with the title: Interaction of GAT1 with sodium ions: from efficient recruitment to stabilisation of substrate and conformation. DOI: https://doi.org/10.7554/eLife.93271.1
DOI: 10.5281/zenodo.10686813
title: Interaction of GAT1 with sodium ions: from efficient recruitment to stabilisation of substrate and conformation

description: This dataset is linked to the eLife paper with the title: Interaction of GAT1 with sodium ions: from efficient recruitment to stabilisation of substrate and conformation. DOI: https://doi.org/10.7554/eLife.93271.1
DOI: 10.6084/m9.figshare.8260754
title: NHL GWAS summary statistics in Chinese population

description: Summary statistics of all genotyped SNPs in discovery stage GWAS. Data includes SNP, CHR, BP.B37, TestAllele, TAF_Cases, TAF_Controls, MajorAlelle, OR, SE, P. TAF: Test allele frequency, BP: position (build 37), OR: Odds ratio, SE: standard error and P: pvalue.
DOI: 10.5281/zenodo.10686977
title: GCspectro_LCDM_(b1,b2,c0,c2,c4,aP)_allflat
DOI: 10.5281/zenodo.10686978
title: GCspectro_LCDM_(b1,b2,c0,c2,c4,aP)_allflat
DOI: 10.5281/zenodo.10409453
title: MPI-ESM Holocene simulations dataset for 'High-Frequency Climate Forcing causes Prolonged Cold Periods in the Holocene'

description: 2m Temperature data for the MPI-ESM Holocene simulations (all forcing and orbital + GHG forcing only), as well as additional ocean variables for the all forcing run. Volcanic and solar forcing for the Holocene are also included. 



2m Temperature all forcing

2m Temperature orbital + GHG forcing

Arctic sea ice

Ocean heat transport

Ocean heat content

Barotropic streamfunction

AOD

Solar forcing
DOI: 10.5281/zenodo.10409454
title: MPI-ESM Holocene simulations dataset for 'High-Frequency Climate Forcing causes Prolonged Cold Periods in the Holocene'

description: 2m Temperature data for the MPI-ESM Holocene simulations (all forcing and orbital + GHG forcing only), as well as additional ocean variables for the all forcing run. Volcanic and solar forcing for the Holocene are also included. 



2m Temperature all forcing

2m Temperature orbital + GHG forcing

Arctic sea ice

Ocean heat transport

Ocean heat content

Barotropic streamfunction

AOD

Solar forcing
DOI: 10.5281/zenodo.10369956
title: Dataset animal-vs-empty collected by camera trap prototype for research purposes
DOI: 10.5281/zenodo.10369957
title: Dataset animal-vs-empty collected by camera trap prototype for research purposes
DOI: 10.57992/nmrxiv.p61
title: Comprehensive cell biological investigation of cytochalasin B derivatives with distinct activities on the actin network
DOI: 10.6084/m9.figshare.14552016
title: Additional file 2 of The genome of a wild Medicago species provides insights into the tolerant mechanisms of legume forage to environmental stress

description: Additional file 2: Table S1. Estimation of genome size of M. ruthenica using 17-mer analysis. Table S2. Sequencing data generated from different platforms/strategies. Table S3 The assemblage summary of the M. ruthenica genome Version 0.8 before chromosome anchoring by Hi-C. Table S4. The assemblage summary of the M. ruthenica genome Version 1.0. Table S5. Genome estimation using RNA sequencing data. Table S6. Assessment of the transcript coverage with the transcritome assembly. Table S7. The prediction of repeat elements in the M. ruthenica genome. Table S8. Categories of transposable elements predicted in the M. ruthenica genome. Table S9. General statistics of predicted protein-coding genes in M. ruthenica. Table S10. General statistics of mapping rate to functional database of protein-coding genes. Table S11. General statistics of protein-coding genes of homolog species. Table S12. GO enrichment of unique genes in M. ruthenica. Table S13. General statistics of non-coding RNA of the genome. Table S14. Statistics of synteny blocks within M. ruthenica and M. truncatula, M. ruthenica and T. pratense, M. ruthenica and C. arietinum, and M. ruthenica itself. Table S15. The corresponding relationship of synteny blocks in M. ruthenica with M. truncatula. Table S16. Statistics of TFs in M. ruthenica, M. truncatula and M. sativa. Table S17. Information of FHY3/FAR1 genes in M. ruthenica. Table S18. Information of FHY3/FAR1 genes in M. truncatula. Table S19. The GO enrichments of expanded families. Table S20. The GO enrichments of contracted families. Table S21. The GO enrichments of lost genes in the genome of M. truncatula during domestication. Table S22. The GO enrichments of lost genes in the genome of M. sativa during domestication. Table S23. Statistics of transcriptome libraries. Table S24. TFs responsive to drought in M. ruthenica. Table S25. TFs responsive to drought in M. truncatula. Table S26. Resequencing data of 19 accessions. Table S27. Statistics and annotation of SNPs. Table S28. Candidate genes associated with drought tolerance analyzed by selective sweep. Table S29. The GO enrichments of candidate genes associated with drought tolerance analyzed by selective sweep. Table S30. The GO enrichments of drought-responsive genes from Zhenglanqi accession. Table S31. The GO enrichments of drought-responsive genes from Xinghe accession. Table S32. Classification of potential MYB target genes which were responsive to drought stress.
DOI: 10.6084/m9.figshare.14552016.v1
title: Additional file 2 of The genome of a wild Medicago species provides insights into the tolerant mechanisms of legume forage to environmental stress

description: Additional file 2: Table S1. Estimation of genome size of M. ruthenica using 17-mer analysis. Table S2. Sequencing data generated from different platforms/strategies. Table S3 The assemblage summary of the M. ruthenica genome Version 0.8 before chromosome anchoring by Hi-C. Table S4. The assemblage summary of the M. ruthenica genome Version 1.0. Table S5. Genome estimation using RNA sequencing data. Table S6. Assessment of the transcript coverage with the transcritome assembly. Table S7. The prediction of repeat elements in the M. ruthenica genome. Table S8. Categories of transposable elements predicted in the M. ruthenica genome. Table S9. General statistics of predicted protein-coding genes in M. ruthenica. Table S10. General statistics of mapping rate to functional database of protein-coding genes. Table S11. General statistics of protein-coding genes of homolog species. Table S12. GO enrichment of unique genes in M. ruthenica. Table S13. General statistics of non-coding RNA of the genome. Table S14. Statistics of synteny blocks within M. ruthenica and M. truncatula, M. ruthenica and T. pratense, M. ruthenica and C. arietinum, and M. ruthenica itself. Table S15. The corresponding relationship of synteny blocks in M. ruthenica with M. truncatula. Table S16. Statistics of TFs in M. ruthenica, M. truncatula and M. sativa. Table S17. Information of FHY3/FAR1 genes in M. ruthenica. Table S18. Information of FHY3/FAR1 genes in M. truncatula. Table S19. The GO enrichments of expanded families. Table S20. The GO enrichments of contracted families. Table S21. The GO enrichments of lost genes in the genome of M. truncatula during domestication. Table S22. The GO enrichments of lost genes in the genome of M. sativa during domestication. Table S23. Statistics of transcriptome libraries. Table S24. TFs responsive to drought in M. ruthenica. Table S25. TFs responsive to drought in M. truncatula. Table S26. Resequencing data of 19 accessions. Table S27. Statistics and annotation of SNPs. Table S28. Candidate genes associated with drought tolerance analyzed by selective sweep. Table S29. The GO enrichments of candidate genes associated with drought tolerance analyzed by selective sweep. Table S30. The GO enrichments of drought-responsive genes from Zhenglanqi accession. Table S31. The GO enrichments of drought-responsive genes from Xinghe accession. Table S32. Classification of potential MYB target genes which were responsive to drought stress.
DOI: 10.15468/dl.mh4dns
title: Occurrence Download

description: A dataset containing 2077 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cirsium alsophilum (Pollini) Greuter"
 ]
}

 The dataset includes 2077 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138071-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ww9ck
title: Occurrence Download

description: A dataset containing 45198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "TaxonKey is Combretaceae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 45198 records from 289 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004458-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.epsa57
title: Occurrence Download

description: A dataset containing 2827 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Continent is North America",
 "Continent is South America"
 ]
 },
 "TaxonKey is Megaloptera"
 ]
}

 The dataset includes 2827 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197276-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10987303
title: Incoherent phenomena in anisotropic periodic structures: from modeling to experimental demonstration

description: Experimental measurement of difracted light Fig. 9 (subplot a consists of Grating_520_90_740_medium, columns 14 and 16) and Fig. 10 (reflection and transmission spectra of diffraction order generated by attached Python code) in the article Incoherent phenomena in anisotropic periodicstructures: from modeling to experimental demonstration.
DOI: 10.15468/dl.9qnts5
title: Occurrence Download

description: A dataset containing 313 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cirsium alatum (S.G.Gmel.) Bobrov"
 ]
}

 The dataset includes 313 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138058-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.