cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/8ys8jssm9k
title: A dataset of dental periapical X-ray 

description: Please see the paper in Data in brief journal
DOI: 10.17632/98t2p3ttcb
title: Images from Meso- and Bathypelagic Surveys in the Gully Marine Protected Area: I: Fish of the 2007 Survey

description: During 2007–10, Canada’s Department of Fisheries and Oceans conducted a series of four midwater-trawl surveys, at meso- and bathypelagic depths, in The Gully – a very large submarine canyon incised into the Scotian Shelf, immediately east of Sable Island, the core of which has been encompassed within a Marine Protected Area since 2004. The surveys followed a fixed-station, depth-stratified design, with replicate sets both in daylight and at night. Most sampling used International Young Gadoid Pelagic Trawls (IYGPTs) –open nets with 60 m² mouth area– worked on double-oblique profiles. Full details of the field methodologies have been presented by Kenchington et al. (2009, 2014). Catches of the 20 abundance- or biomass-dominant fish species have been published by Thompson and Kenchington (2016) and Kenchington et al. (2018, 2020a). The ceratioid anglerfishes have been published by Kenchington et al. (2020b) and DNA barcodes derived from selected specimens by Kenchington et al. (2017). 

Identifications of fish specimens taken during the surveys are still ongoing (in 2022), while damage in the nets means that not all can be identified to species. It is, nevertheless, certain that specimens from in excess of 240 fish species were captured. Many of those have rarely been seen and most had never been photographed in fresh condition. Thus, a variety of camera systems were taken to sea on the surveys and an attempt made to create images of every species captured. The resulting collection has been catalogued and lightly edited (removing duplicates and unfocused or otherwise valueless images), while erring on the side of retaining any image that might prove useful in the future. Almost all of those retained are in their original formats and resolutions, though some copies subsequently edited for publication have been added. Because of file-size limits, the present collection includes only the 677 catalogued images of fish specimens from the 2007 survey, together with a copy of the entire catalogue of fish images. Individual files are uniquely numbered (from F07001 to F07677), with corresponding entries in the catalogue. The latter presents the contents of each image (typically only a species name, though some entries have more details) and such other image-specific details as are available. Not all images can be linked to particular specimens but, for those which can be, catalogue entries include cross-references to the survey-program’s catch database, which provides further details on the specimens concerned.

All images © His Majesty the King in Right of Canada, 2022.

Amongst the named authors, the surveys were led by Trevor Kenchington, who also catalogued the images and, working with Cam Lirette, presented them here. Specimen identifications at sea and most of those ashore were by Daphne Themelis, while Bill MacEachern captured most of the images. Other images were taken by Merlin Best, Kevin MacIsaac or Elizabeth Shea.
DOI: 10.6084/m9.figshare.19158053.v1
title: Complete_data_individual_knickpoints

description: Individual spreadsheets containing all data (longitudinal profile surveys, bed thickness measurements, Schmidt hammer and point load test data for rock strength, pictures, field observations, etc.) for each knickpoint referenced in Chilton and Spotila, 2022.
DOI: 10.6084/m9.figshare.28095443.v1
title: 249869272 Raw data.xlsx

description: This is the raw data concerning the spore sizes and cell wall compositions of three major etiological species of Mucorales causing mucormycosis, and the interaction of their spores or extracted cell wall polysaccharidic (alkali-insoluble fibrillar and alkali-soluble amorphous) fractions with primary immune cells (peripheral blood mononuclear cells) as well as THP-1 (human leukemic monocytic) cell-line.
DOI: 10.17632/8cvgyv68hy
title: Data for: Voice Analytics in Business Research: Conceptual Foundations, Acoustic Feature Extraction, and Applications

description: Voice data associated with the article "Voice Analytics in Business Research: Conceptual Foundations, Acoustic Feature Extraction, and Applications"
DOI: 10.17632/f3g6ythk5h
title: Processes optimization factors and human capital factors as means of value creation in organizations

description: These data are from a MSc survey research and represent the valuation of 19 variables aimed to depict both process optimization factors and human capital factors as means of value creation in organizations.
DOI: 10.6084/m9.figshare.19126139.v1
title: eGWAS_SNP_AllChr.hmp

description: SNP dataset generated via a combination of maize hapmap3 and RNAseq library derived SNPs used for the eGWAS paper<br>
DOI: 10.6084/m9.figshare.21579546.v2
title: Thyroid Spectral.xlsx

description: include normal thyroid tissue and papillary thyroid carcinoma spectrum
DOI: 10.17632/g7zyskwx8s
title: Data for: An Investigation of Crack Propagation in an Insect Wing Using the Theory of Critical Distances

description: Videos of Tests A and B
DOI: 10.17632/n3b54nsw8m
title: Battery aging datasets for "Increasing generalization capability of battery health estimation using continual learning approach"

description: These datasets contain different battery types (pouch and prismatic) that have been aged at various temperatures and loading profiles. The partial Q curves during charging and capacities are provided.

Please cite our paper "Increasing generalization capability of battery health estimation using continual learning approach" if use these datasets.

Please note the charge capacity in the datasets is the amount for the ampere-hour throughput in charging mode, which means the capacity in Dataset1 is accounted for with also the charging pulses in dynamic discharging. The charge capacity and discharge capacity are recorded by Neware battery tester. Therefore, it represents the total charging amount during each full charge-discharge cycle. For simplicity and easy use, the SOH curves are normalized by the charge capacity for verification in this work. 

Please refer to "The explainable uncertainty in degradation process: a discovery from non-accelerated batteries degradation experiment" for the detailed information and the raw data used as Dataset 5 in the verification. The authors also sincerely thank Dr. Dongzhen Lyu for sharing and explaining the data.
DOI: 10.6084/m9.figshare.156059.v1
title: Concatenated alignment of 24 genes for bacteria and archaea

description: This is a fasta-formatted concatenated alignment of 24 genes for 841 bacterial and archaeal taxa. It is described in Lang et al, 2013.
DOI: 10.6084/m9.figshare.28287482.v1
title: Sensor-Based Fall Detection Dataset with 8,953 Activities from 29 Subjects

description: This dataset presents a robust collection of 8,953 recorded activities for video and sensor-based fall detection, gathered from 29 diverse subjects. It includes 2,791 falls and 6,162 Activities of Daily Living (ADL), offering extensive coverage of real-world scenarios. Fall cases span a variety of situations, including falls to the left, right, front, back, and complex scenarios such as falling while attempting to sit on a chair or from elevated positions. ADL activities include walking, running, standing up from the ground, and driving, making this dataset a valuable resource for developing and testing advanced fall detection models.
DOI: 10.6084/m9.figshare.5410981.v2
title: The Wikipedia Network of Mathematicians

description: This is data used in the paper "Analysis of the Wikipedia Network of Mathematicians". The data is taken from three snapshots of Wikipedia, taken in 2013, 2017 and 2018. It contains the raw Wikipedia data used as our source as well the results of our processing. Includes are edgelists, networks of the largest comopnent in graphml format, and tables of data on the nodes (the mathematicians). <br><br>We have also included an appendix for the EPJ version of the paper, mathematiciansEPJappendix.pdf. However a complete version of this work is also at arXiv:1902.07622<br>
DOI: 10.17632/722vgzncnz
title: PUCV Interno 34. Análisis de la producción de los egresados de los claustros doctorales de la PUCV 2015-2019

description: El claustro de profesores de más alto rendimiento cualitativo y cuantitativo es el del Doctorado Conjunto en Ciencias Física (2015-2019), cuyo claustro de profesores alcanza un impacto 3,01, muy superior al de Chile que es 1,22. El Doctorado en Ing.Industrial alcanza un Impacto Normalizado (IN) total de 1,53 y uno liderado de 1,98; sus egresados a su vez alcanzan un IN de 1,86, superando a sus maestros. El Doctorado en Ciencias de la Ingenieria mención Ingeniería Bioquímica su claustro de profesores muestra un INwL por sobre el mundo, movilizando la producción de sus alumnos por sobre el promedio de América Latina. El Doctorado en Lingüística muestra un claustro de profesores fuertes (INwL 1,1, por sobre el 0,7 de In de Chile), sin embargo, se aprecia como la producción en el área requiere alcanzar un mayor nivel de madurez científica de sus egresados. El Doctorado conjunto en Biotecnología muestra una frontera entre un claustro de profesores de dilatada solvencia científica y unos egresados que logra nivelar las competencias de sus maestros. Como es de deseable, en algunos programas doctorales el desempeño científico supera a de sus maestros. En la Tabla 2 doi: 10.17632/xfrt6hn67g.2 se presenta de modo comparativo este segundo grupo de programas. Las razones de estas diferencias se deben fundamentalmente a cambios en las practicas disciplinares, las que los jóvenes doctores han sido capaces de asimilar, como es el caso de Derecho (2003), Filosofía (1982) y Literatura (1994). En otros campos disciplinares sabido es que los desarrollos científicos se dan a temprana edad, como lo es en Matemáticas (2013) y Ingeniería Informática (2011). Los resultados del Doctorado en Acuicultura (2004) muestran un claustro de profesores fuertes y de egresados más fuertes y autónomo. los Con todo, la Universidad considera esto una fortaleza y un desafío a su vez. El tercer grupo de programas de doctorales (Tabla 3 doi: 10.17632/xfrt6hn67g.2) se encuentra en proceso de consolidar las capacidades investigativas de sus claustros de profesores y de desarrollar en los egresados buenas prácticas de producción científica más parecidas a los de sus colegas en el mundo. Doctorado en Cs mención Química, creado en 1982, muestra el retroceso que esta ciencia vive en el mundo desde hace unos años, absorbido por disciplinas con abordajes más interdisciplinarios y multidisciplinarios. En el caso de Psicología (2011) se requiere focalizar la producción en revistas científicas con visibilidad internacional, dejando atrás América Latina. En el caso del Doctorado en Didáctica de las Matemáticas (2010), otros productos de la investigación complementan su producción como lo son monografías resultados de investigación y textos didácticos para diversos niveles de aprendizaje. En el Caso de Cs Agroalimentarias (2017) aún no tienen egresados, pero la experiencia nacional en este campo lo hace muy exigente.
DOI: 10.17632/97vbj3k4r6
title: Disparities between Asian groups in melanoma treatment timeliness: Analysis of the National Cancer Database (2004-2020) 

description: The hypothesis was that disparities in time from diagnosis to definitive surgery (TTDS) exist between Asian groups. The National Cancer Database (2004-2020) was used to populate a sample of 1388 Asian patients with melanoma. Adjusting for sociodemographic factors with East Asian patients as the reference group, Southeast and South Asian melanoma patients had around 3 times the odds of a TTDS over 90 days.

Table 1. Categorization of Asian ethnicities into regional groups
Table 2. Sample demographics
Table 3. Adjusted odds ratios of multivariable analyses of melanoma treatment timeliness and sociodemographic associations
DOI: 10.6084/m9.figshare.28601144.v1
title: Supplementary Material 10

description: Grouping antimicrobial resistance (AMR) genes based on their association with 16 antimicrobial classes used in antimicrobial susceptibility testing (AST) and <i>E. coli</i> treatment in ICU sepsis patients is crucial for understanding resistance patterns, guiding treatment decisions, and tracking the evolution of resistant strains.<b>Enhanced treatment strategies: </b>By categorizing AMR genes based on antimicrobial classes, clinicians can predict resistance trends in ICU <i>E. coli</i> sepsis cases, aiding in selecting effective antibiotics and reducing treatment failures.<b>Understanding phylogenetic distribution:</b> Phylogenetic grouping helps reveal whether specific resistance genes are associated with particular <i>E. coli</i> lineages, providing insights into the evolutionary dynamics and horizontal gene transfer events contributing to multidrug resistance.<b>Surveillance and outbreak tracking: </b>Clustering AMR genes by antimicrobial classes allows researchers to monitor the spread of resistant <i>E. coli</i> strains in ICU settings, identifying high-risk clones and resistance hotspots.<b>Correlation with phenotypic resistance:</b> Linking AMR gene clusters with AST results helps validate genotype-phenotype relationships, ensuring that genetic predictions align with observed drug resistance patterns.<b>Personalized medicine approaches: </b>Understanding the phylogenetic distribution of AMR genes supports the development of targeted therapies, potentially enabling the use of combination treatments to overcome specific resistance mechanisms.<b>AMR mechanism identification: </b>Categorizing resistance genes among antimicrobial classes provides deeper insights into resistance mechanisms, such as enzymatic degradation (e.g., β-lactamases for β-lactams), efflux pump activity, or target site modifications.<b>Antibiotic stewardship programs: </b>The data generated from such phylogenetic groupings can inform antimicrobial stewardship efforts by highlighting the most concerning resistance patterns and promoting the judicious use of antibiotics in ICU settings.By analyzing AMR gene distributions across antimicrobial classes and integrating phylogenetic data, researchers can develop robust strategies for combating drug-resistant <i>E. coli</i> infections in ICU patients with sepsis, ultimately improving clinical outcomes and slowing the spread of antimicrobial resistance.
DOI: 10.6084/m9.figshare.29149694.v1
title: Green Hotel Raw Data

description: Green Hotel Raw Data
DOI: 10.17632/3543f25rcx
title: Molecular characterisation of Australasian Ixodiphagus (Hymenoptera; Encyrtidae; Encyrtinae) reveals unexpected diversity and a potential novel host-switch.

description: Nucleotide alignments used for phylogenetic analyses.
DOI: 10.17632/6vkj4ykmb7
title: LINF_190007500

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/p5jt3jc6zf
title: Prevalence of Hidradenitis Suppurativa in Dhaka, Bangladesh: A hospital-based study

description: This study was an initiative of the Global Hidradenitis Suppurativa Atlas (GHiSA) to see the prevalence of hidradenitis suppurativa in Dhaka city of Bangladesh as a part of global prevalence of Hidradenitis suppurativa. The study was done with same methodology to ensure uniformity across the study sites. This was a mono-center study carried out at the Outpatient Department (OPD) of pediatrics, obstetrics, internal medicine, and other departments (excluding dermatology), of the Bangabandhu Sheikh Mujib Medical University Hospital, Dhaka, Bangladesh. Participants were enrolled from 15th April to 15thDecember 2022 consecutively, but due to the variable processing time, an element of convenience sampling was present. Informed consent was obtained prior to study participation. The English version of questionnaire was translated into Bangla by two volunteers who are fluent in both English and Bangla and data was collected by trained research assistants. The trained research assistants approached the potential respondents and explained the purpose of the study, while also stressing the anonymity of data. 
Patients from all over the country take service from BSMMU, which is the highest referral hospital, situated in the capital Dhaka. The city is situated in the central part of the country and its population is more than 23 million. Healthy persons accompanying patients to the BSMMU OPD were therefore considered as a representative population of the whole country. This study was approved by the Institutional Review Board (BSMMU/2022/4085; Date 23-4-2022) prior to study initiation. This study followed the Stard Flow diagram for diagnostic accuracy.
From the OPD a total of 2500 apparently healthy accompanying adults were approached for study participation, and none refused participation. Data was collected from 2500 respondents but among these, 123 were incomplete and therefore excluded. Finally, a total of 2377 participants were included for statistical analysis. Three HS patients were confirmed by dermatologists. A total of 23 screen-negative persons were randomly selected for clinical examination to verify the outcome. None of them had HS. 
The point prevalence in the final sample was 0.13 % (CI: 0.04%- 0.37%). There was a significant difference in the gender distribution in the sample. All (100.0%) the HS patients were male. The median age of the HS patients was 45 years. The median BMI for the HS patients was 28 kg/m2. The diagnostic accuracy of the screening questionnaire is presented in table 1. The sensitivity was 0.1 (3/3), specificity was 0.1 (23/23), positive predictive value PPV was 0.1 (3/3) and negative predictive value PPV was 0.1 (23/23).
DOI: 10.6084/m9.figshare.6176285.v1
title: Mass balance, velocity and ice thickness data on Nordenskiöldbreen, Svalbard

description: The data is used in the paper "Dynamic response of a high Arctic glacier to melt and runoff variations", published in Geophysical Research Letters. For more details about the data we refer to the manuscript.<br>
DOI: 10.6084/m9.figshare.24746481.v1
title: Similarity of NTMs and impact on unit value

description: Non-tariff measures (NTMs) may lead to a higher regulatory burden on firms that are required to comply with them. The increase in similarity of NTMs applied on their respective imports by the trading partners may reduce this burden as exporting firms are required to comply with them regardless of whether they sell in the domestic market or export to markets applying similar NTMs. I determine the influence of increasing similarity of NTMs applied by the US and its trading partners on the unit value of imports. I split the sample of source countries based on their income-level and find that the influence on unit value is different within the richer and the poorer countries. The robustness checks reinforce the findings that increasing similarity of NTMs applied by trading partners does influence the unit value of imports but does so differently based on the income-level of source countries.
DOI: 10.6084/m9.figshare.9980471.v1
title: Global pollinator database

description: The present dataset was compiled from the published literature on plant-pollinator interactions. It consists of <br>* a .csv file (database), documenting crop-pollinator interactions that have been reported in the literature for 80 crop species and 256 pollinator species (global coverage), along with trait values for both crops and pollinators. <br>* a second .csv file with metadata (description of the variables) <br>The compilation of the database is described in Boreux et al, in prep. A draft of this manuscript can be requested from alexandra.klein@nature.uni-freiburg.de<br>VB acknowledges funding for the assembly of the database by Bayer CropScience<br>
DOI: 10.17632/f6zh8783v4
title: crystal structure

description: The crystal structures for WPL-DVDE, a water molecules-mediated protein and ligand docking using dimension-varying differential evolution.
DOI: 10.17632/jcddr6tvj2
title: Serum albumin and white matter hyperintensities

description: Data used in manuscript:
DOI : 10.1038/s41398-024-02953-5
Published in Translational Psychiatry
DOI: 10.6084/m9.figshare.22105529.v1
title: Data associated with “Biophysical prediction of protein–peptide interactions and signaling networks using machine learning”

description: Data associated with “Biophysical prediction of protein–peptide interactions and signaling networks using machine learning” by Joseph M. Cunningham, Julia R. Rogers, Grigoriy Koytiger, Peter K. Sorger, and Mohammed AlQuraishi (https://doi.org/10.1038/s41592-019-0687-1). General descriptions are provided below with further details given in READMEs. <strong>HSM data</strong> All data used for training and evaluating HSM is contained in <em>data.zip</em>. This includes pre-processed domain-level data; raw (unaligned) domain-level data; publication sources for HSM training data; pre-processed domain and peptide metadata used in HSM/P proteome-level predictions; and experimental protein-level data used to evaluate HSM/P. <strong>HSM training results</strong> Complete results from hyperparameter tuning and cross-fold evaluation of HSM/ID and HSM/D are contained in <em>training.zip</em>. <strong>PBD model comparisons</strong> Results from PSSMs and external models (PepInt and NetPhorest) evaluated on HSM domain-level data are contained in <em>comparison_models.zip</em>. <strong>HSM/P predictions</strong> Complete set of HSM/P predictions for ‘gold standard’ dataset and human proteome are contained in <em>hsmp_predictions.zip</em>. <strong>Published results</strong> Results from all analysis described in the publication along with source data for figures are contained in <em>publication_results.zip</em>. This also includes domain sequences and multiple sequence alignments used in both HSM/D and HSM/P and a complete list of novel HSM/P predicted PPIs in the human proteome (<em>results/data/perf/hsmp/ppi_predictions.fdr0.01.csv</em>).
DOI: 10.6084/m9.figshare.24623736.v1
title: WWTP HQ rMAGs

description: The HQ rMAGs recovered from the full-scale WWTPs.
DOI: 10.6084/m9.figshare.27263169.v1
title: SNPS

description: snps, salt
DOI: 10.6084/m9.figshare.28342175.v2
title: <b>Dataset for </b><b>Interpretable Machine Learning Reveals Structural Insights into Selective C–H Borylation by Metal-Organic Framework-Supported Ni Catalysts</b>

description: Metal-organic frameworks (MOFs) offer a vast design space as tunable supports for catalytic applications, yet their structural complexity often obscures structure-activity relationships. This study investigates MOF-supported nickel (Ni) catalysts for selective sp³ and sp² C–H borylation. Using interpretable machine learning, we developed 45 concise and comprehensive descriptors that capture the diverse structural features of the vast MOF family, derived from over 470,000 MOF structures. These descriptors allowed us to identify key factors governing the sp³ vs. sp² selectivity. Our findings reveal that sp³ C–H borylation occurs within MOF pores via radical-mediated hydrogen atom transfer (HAT), while sp² C–H borylation is associated with surface or defect sites, favoring a concerted metalation-deprotonation (CMD) mechanism. Guided by these insights, we designed Ni catalysts achieving sp³ C–H selectivity of up to 97.8% and sp² C–H selectivity of up to 88.7%. This work provides a systematic framework for rational design of and transferable insights into MOF-supported catalysts.