cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28079300.v1
title: PfATP4 models

description: Among new antimalarials discovered over the past decade are multiple chemical scaffolds that target <i>Plasmodium falciparum</i> P-type ATPase (<i>Pf</i>ATP4). This essential protein is a Na<sup>+</sup> pump responsible for the maintenance of Na<sup>+</sup> homeostasis. <i>Pf</i>ATP4 belongs to the type 2D subfamily of P-type ATPases, for which no structures have been determined. To gain better insight into the structure/function relationship of this validated drug target, we generated a homology model of <i>Pf</i>ATP4 based on SERCA, a P2A-type ATPase, and refined the model using molecular dynamics in its explicit membrane environment. This model predicted several residues in <i>Pf</i>ATP4 critical for its function, as well as those that impart resistance to various <i>Pf</i>ATP4 inhibitors. To validate our model, we developed a genetic system involving merodiploid states of <i>Pf</i>ATP4 in which the endogenous gene was conditionally expressed, and the second allele was mutated to assess its effect on the parasite. Our model predicted residues involved in Na<sup>+</sup> coordination as well as the phosphorylation cycle of <i>Pf</i>ATP4. Phenotypic characterization of these mutants involved assessment of parasite growth, localization of mutated <i>Pf</i>ATP4, response to treatment with known <i>Pf</i>ATP4 inhibitors, and evaluation of the downstream consequences of Na<sup>+</sup> influx. Our results were consistent with modeled predictions of the essentiality of the critical residues. Additionally, our approach confirmed the phenotypic consequences of resistance-associated mutations as well as a potential structural basis for the fitness cost associated with some mutations. Taken together, our approach provides a means to explore the structure/function relationship of essential genes in haploid organisms.
DOI: 10.6084/m9.figshare.28489340.v1
title: AIMS.au Dataset

description: This project includes the dataset in DeepLake format, along with the metadata and annotation specifications associated with its publication AIMS.au: A Dataset for the Analysis of Modern Slavery Countermeasures in Corporate Statements. The dataset comprises 5,731 modern slavery statements sourced from the Australian Modern Slavery Register, annotated sentence by sentence by human annotators and domain experts. It was developed to aid in the evaluation and refinement of LLMs for analyzing corporate statements regarding modern slavery.More information can be found on the projects' GitHub page or official website.
DOI: 10.17632/c58sg34r84
title: DATA for Lithium isotopes reveal silicate weathering-driven carbonate formation in marine sediments

description: Data for: Lithium isotopes reveal silicate weathering-driven carbonate formation in marine sediments
DOI: 10.6084/m9.figshare.11513178.v1
title: High spatiotemporal resolution mapping of global urban change from 1985 to 2015

description: This dataset includes three parts:<br>(1) The mapped global annual urban dynamics (GAUD) and green recovery from 1985 to 2015 at a 30-m resolution. This part of data is organized by 10-degree grids (totally 224).Shapefiles of 10-degree grids can be found in "grids_world.zip".Urban expansion data is packaged in "urban_grid_i.zip" (i ranges from 0 to 223). Green recovery data is packaged in "green_grid_0-223.zip".Their format is GeoTiff, and for each pixel, values from 1985 to 2015 demonstrate the urbanized or green recovery year, while 0 means no data.<br>(2) The interpreted samples of urban extent in 1985 and 2015, and urbanized year during 1985 and 2015. This part of data is for examining the accuracies of our data fusion and temporal segmentation approach. Interpreted urban extent is packaged in "Ref_tif_clip_1985.rar" and "Ref_tif_clip_2015.rar".Its format is GeoTiff, and for each pixel, value 1 means urban areas, while 0 means non-urban areas.Valid samples of urbanized year can be found in "validation_urbanized_year.xls".<br>(3) A demo of NUACI calculation and urbanized years dectection can be found at link:https://code.earthengine.google.com/1c901129fa8c9d81b292824e8fb4ff1c<br>
DOI: 10.6084/m9.figshare.14561781.v1
title: Supplemental materials in the case study

description: Supplemental materials in the case study of the submitted paper.<br>
DOI: 10.6084/m9.figshare.2075584.v1
title: Inbreeding depression in red deer

description: Individual and annual data on various life history traits in red deer (<i>Cervus elaphus</i>), and genomic and pedigree based inbreeding coefficients. See `Data_description.txt' for details.<br>Please contact the authors if you plan to use this data.
DOI: 10.6084/m9.figshare.27265302.v2
title: <b>Indirect effects of warming via phenology on reproductive success of alpine plants</b>

description: 1. Climate warming has induced pronounced shifts in the phenology of alpine plants worldwide, yet the impact of these changes on plant reproduction remains unclear, although phenology plays a vital role in reproduction.2. Based on a 7-yr field warming and altered precipitation experiment initiated in 2017, we measured three reproductive phenological events and seven reproductive traits of six dominant species, belonging to two flowering functional groups, to assess the effects of climate change on reproductive phenology and the reproductive consequence of changing the phenology in an alpine meadow on the eastern Tibetan Plateau from 2021 to 2023.3. Warming significantly advanced the start of flowering in early-spring flowering (ESF) and mid-summer flowering (MSF) plants, while the fruiting period of ESF plants remained stable. Furthermore, warming led to a decrease in the number of seeds and productivity of alpine plants, while seed size remained stable. Phenological changes regulate the reproductive success of alpine plants. Specifically, the start of flowering for ESF plants and the start of fruiting for MSF plants regulated the number of seeds and productivity of the two flowering functional groups, respectively. The increase in phenological niche overlap and intensification of interspecific competition, caused by different phenological responses of the flowering functional groups to warming, also are key factors contributing to the decline in seed production of alpine plants.4. <i>Synthesis.</i> These results demonstrate that the reproductive success of alpine plants would be decreased by earlier reproduction under climate warming, and alpine plants tend to maintain stable seed size in response to climate change. Our study emphasizes the important regulatory and indicative role of reproductive phenology in the sexual reproduction of alpine plants under future climate change.
DOI: 10.6084/m9.figshare.8088857.v2
title: DA.nc

description: DA reconstruction NetCDF file<br>
DOI: 10.6084/m9.figshare.8280800.v1
title: Repetitive DNA in 101 fish genomes.

description: This is the result of annotating the repetitive content in 101 fish genomes with pipeline found at https://github.com/uio-cels/Repeats.
DOI: 10.17632/7m58kxs742
title: IoT Vulnerability Dataset

description: The dataset uploaded here is generated in a realistic manner with IoT devices connected to the internet through router. By using well known ethical hacking tool Kali Linux is used for hacking the devices to generate network traffic of various attack network traffic. Wireshark software was used for capturing the data. All the PCAP files generated and their corresponding csv files have been uploaded here for the researchers in the field of IoT security.
DOI: 10.17632/shhtywfbpf
title: Source Data and Source Code for: Cytoplasmic Mg2+ supersedes carbon source preference to dictate Salmonella metabolism

description: Source data and source code for the manuscript entitled "Cytoplasmic Mg2+ supersedes carbon source preference to dictate
Salmonella metabolism," authored by Nick D. Pokorzynski, Katarina A. Jones, Shawn R. Campagna, and Eduardo A. Groisman
DOI: 10.6084/m9.figshare.24915870.v7
title: Traits estimated when grown alone may underestimate the competitive advantage and invasiveness of exotic species

description: This repository contains all the compiled data and code from the work "Traits estimated when grown alone may underestimate competitive advantage and invasiveness of exotic species" .
DOI: 10.17632/6cz3g9dpjt
title: IBSEM Code and Documentation

description: Code, hyperparameters, and instructions to run the IBSEM eco-genetic model of a salmon population.
Code and parameterisation are updated to 29/04/2025
DOI: 10.6084/m9.figshare.5450341.v2
title: 3DCORE - Forward modeling of solar storm magnetic flux ropes for space weather prediction

description: This code is concerned with data interpretation and prediction for space weather research. It is a method for forward modeling of solar storm magnetic flux ropes, called 3-Dimensional Coronal Rope Ejection (3DCORE). <br>3DCORE is able to produce synthetic in situ observations of the magnetic cores of solar coronal mass ejections sweeping over planets and spacecraft. Near Earth, these data are taken currently by the Wind, ACE and DSCOVR spacecraft. Other suitable spacecraft making these kind of observations carrying magnetometers in the solar wind were MESSENGER, Venus Express, MAVEN, and even Helios, and in the future this will be done by Parker Solar Probe, Solar Orbiter and possibly interplanetary CubeSats.<br>It is distributed with an MIT license and has this DOI: https://doi.org/10.6084/m9.figshare.5450341<br>If this research is used for peer-reviewed scientific publications, the paper below needs to cited and in any case, please also contact me either atchristian.moestl@oeaw.ac.ator through https://twitter.com/chrisoutofspace<br><br>This code was used for producing the figures and results in the publication: Möstl et al. (2018), in press at AGU Space Weather, https://arxiv.org/abs/1710.00587<br>The 3DCORE code is also on github:<br>https://github.com/cmoestl/3DCORE<br><br><br>
DOI: 10.6084/m9.figshare.5909176.v1
title: Manuscript submission data and R code archive for "Randomised Control Trials could be, and should be, more widely used in conservation: evidence from a Payment for Environmental Services evaluation"

description: This fileset contains R code, data and metadata for a manuscript submission. We expect to create a new archive following reviewer comments. Please consult the README file for a more thorough description of contents.<br>
DOI: 10.17632/25gf67c96f
title: Stated Preferences for Car Choice

description: This Data set including all the Variables (choice, college,hsg2, coml5, typez, fuelz, pricez, speedz, pollutionz, sizez) from 2016 to 2018.I scrapped this data from www.qed.econ.queensu.ca
DOI: 10.6084/m9.figshare.10069865.v1
title: Supplementary Material for: Multimodal Wearable Sensors to Measure Gait and Voice

description: <b><i>Background:</i></b> Traditional measurement systems utilized in clinical trials are limited because they are episodic and thus cannot capture the day-to-day fluctuations and longitudinal changes that frequently affect patients across different therapeutic areas. <b><i>Objectives:</i></b> The aim of this study was to collect and evaluate data from multiple devices, including wearable sensors, and compare them to standard lab-based instruments across multiple domains of daily tasks. <b><i>Methods:</i></b> Healthy volunteers aged 18–65 years were recruited for a 1-h study to collect and assess data from wearable sensors. They performed walking tasks on a gait mat while instrumented with a watch, phone, and sensor insoles as well as several speech tasks on multiple recording devices. <b><i>Results:</i></b> Step count and temporal gait metrics derived from a single lumbar accelerometer are highly precise; spatial gait metrics are consistently 20% shorter than gait mat measurements. The insole’s algorithm only captures about 72% of steps but does have precision in measuring temporal gait metrics. Mobile device voice recordings provide similar results to traditional recorders for average signal pitch and sufficient signal-to-noise ratio for analysis when hand-held. Lossless compression techniques are advised for signal processing. <b><i>Conclusions:</i></b> Gait metrics from a single lumbar accelerometer sensor are in reasonable concordance with standard measurements, with some variation between devices and across individual metrics. Finally, participants in this study were familiar with mobile devices and had high acceptance of potential future continuous wear for clinical trials.
DOI: 10.6084/m9.figshare.14498825.v1
title: Additional file 1 of Insights into genomic evolution from the chromosomal and mitochondrial genomes of Ustilaginoidea virens

description: Additional file 1: Table S1. Chromosome lengths in genome assemblies of U. virens strains UV8b and UVP1. Table S2. List of candidate effector proteins in U. virens. Table S3. The average distance of effector genes apart from adjacent transposable elements in U. virens genome. Table S4. Conservation analysis of candidate effector proteins in U. virens compared with the closely related fungal species M. anisopliae and F. graminearum. Table S5. Location of the U. virens strains collected in this study. Table S6. SNP frequencies in coding sequences of candidate effector- and secreted protein-encoding genes in different U. virens strains compared with the reference genome. Table S7. The predicted structural variations between U. virens UV8b and UVP1 genomes. Table S8. Lineage specific regions in UV8b genome identified through comparisons with other U. virens strains. Table S9. The sizes of fungal mitochondrial genomes collected from MiToFun database. Table S10. The putative open reading frames in intronic regions of the mitochondrial genes in UV8b. Table S11. The sizes of mitochondrial genomes in different U. virens strains. Table S12. The quality of genome assemblies using non-hybrid and hybrid assembling methods.
DOI: 10.6084/m9.figshare.21430731.v3
title: Data summary sheet Rohling et al_Reviews of Geophysics 2022-v2.xlsx

description: This file presents original ice-volume and deep-sea temperature reconstructions in Rohling et al. "Comparison and synthesis of sea-level and deep-sea temperature variations over the past 40 million years" (Reviews of Geophysics), as derived using the Westerhold et al. (2020) and Lisiecki and Raymo (2005) deep-sea benthic isotope delta-18O records, and coral data selected from the Hibbert et al. (2016) database. Other datasets plotted in our review are obtained from the source references cited in the review paper.
DOI: 10.6084/m9.figshare.22812278.v1
title: Blind people editing virtual tactile maps - raw data

description: The data refer to the manipulation task experiment, doi: 10.6084/m9.figshare.21517992 . There is one file per participant per resolution of the virtual environment. Each file contains 7 columns and one row for each sample acquired. The 7 columns are: - trial, i.e. the number of the current trial acquired; - xMouse, i.e. the position of the mouse along the x axis expressed in [pixel]. The resolution of the virtual environment is1920 x 1200 [pixel]; - yMouse, i.e. the position of the mouse along the y axis expressed in [pixel]. The resolution of the virtual environment is 1920 x 1200 [pixel]; - h, i.e. the hight of the tactor giving the tactile feedback, the height is expressed in [mm] - trigger, i.e. the acquisition status 1(recorded sample)/0(not recorded sample); - eachChoice, i.e. the button pressed to move the virtual object 1(up),2(down),3(left),4(right); - interSampleTime, i.e. time between two consecutive samples expressed in [seconds].
DOI: 10.6084/m9.figshare.24714708.v1
title: Analysis of complications related to diabetic ketoacidosis in pediatric patients at a University Hospital – a cross-sectional study

description: <b>INTRODUCTION:</b> Diabetic ketoacidosis (DKA) is one the main complications of type 1 diabetes mellitus (DM1) and the leading cause of death among children and adolescents with the disease. The Medical hospital of Ribeirão Preto Medical School (HC-FMRP) is a reference in pediatric endocrinology and is responsible for most of the treatment of DKA cases in the Unified Health System. The objective of this study was to characterize the cases of DKA treated in that service and identify their most frequent complications. <b>RESEARCH DESIGN AND METHODS</b>: A cross-sectional descriptive study was carried out, based on the review of medical records of patients aged 0 to 16 years with a diagnosis of DKA treated between January 2016 and August 2020. <b>RESULTS:</b> Seventy-seven (77) admissions were analyzed. In relation to the total, 55.84% were diagnosed with a new case of DM1. The most affected age group was teenagers. An increase of 90.9% of cases between 2016 and 2020 was visualized. In HCFMRP, insulin therapy is performed subcutaneously. In the study, an increase in the need for insulin use was observed as the severity increased. Hypokalemia was the most frequent complication. There was cerebral edema in 11.69% of the cases, and cerebral edema was the cause of the only death, corresponding to a mortality rate of 1.29%. <b>CONCLUSIONS:</b> DKA incidence rates were higher than those reported in current guidelines. The number of cerebral edemas was also higher, but with lower mortality. It shows the effectiveness of subcutaneous insulin for treatment. An increase in the number of DKA cases was seen over the period, and more studies are needed to evaluate it. Other studies are also necessary to evaluate the difference in therapeutic conduction with subcutaneous and intravenous insulin. This study can contribute to improvement in the DKA management.
DOI: 10.6084/m9.figshare.27923091.v3
title: Appendix Mahfud

description: Nursing documentation is critical for ensuring quality patient care and effective communication among healthcare professionals. However, in low- and middle-income countries (LMICs), documentation practices often fall short due to resource limitations and cultural barriers. This mixed-methods study evaluated a culturally adapted roleplay-based intervention to improve nursing documentation quality among Indonesian nurses. Using a quasi-experimental design, 132 nurses from three public hospitals in Jakarta were assigned to either the treatment or control group. The intervention integrated conventional roleplay, digital simulation, and reflective practice. Quantitative data were collected at baseline, post-intervention, and at an 11-week follow-up, measuring documentation quality, self-efficacy, and cognitive load. Additionally, qualitative data were gathered through semi-structured interviews with 15 experimental group participants. Results showed significant improvements in documentation quality (Cohen’s d = 1.28 at T1, 1.14 at T2), self-efficacy (d = 0.99 at T1, 0.85 at T2), and reductions in cognitive load (d = -0.84 at T1, -0.72 at T2). Qualitative findings highlighted increased confidence, realism of the scenarios, integration of digital skills, and cultural considerations in documentation practices. Participants' hierarchical structure orientation moderated the effectiveness of the intervention. This study provides evidence that hybrid roleplay interventions can enhance nursing documentation practices in low- and middle-income countries, with a focus on culturally tailored healthcare education. This study demonstrates that culturally tailored hybrid roleplay interventions can effectively enhance nursing documentation quality, self-efficacy, and cognitive load reduction, particularly in LMICs, offering a scalable model for healthcare education
DOI: 10.6084/m9.figshare.29047121.v1
title: data.xlsx

description: 我们在云杉种植园进行了系统的多点采样，以量化和比较 MNC 对根际土壤 SOC 的贡献，做实验得出的数据。
DOI: 10.6084/m9.figshare.21952826.v1
title: Data from "Microclimatic gradients cause phenological variations within temperate tree canopies in autumn but not in spring"

description: The files contain cleaned raw data of the leaf phenology (spring_phenology.xlsx, autumn_phenology.xlsx), the calculated phenological dates (phenology_dates.xlsx), the daily microclimatic parameters (microclimate_daily.xlsx), and the calculated growing degree days (gdd.xlsx) as reported in: <br> Zahnd C, Arend M, Kahmen A & Hoch G, 2023. Microclimatic gradients cause phenological variations within temperate tree canopies in autumn but not in spring. Agric For Meteorol 331: 109340 <br> Files contain a metadata tab with the most important information. For details regarding the methods, please refer to the original publication and Table S1 in the online Supplementary Materials.
DOI: 10.17632/pcccgbrfks
title: Pleurotus calyptratus (Agaricales, Basidiomycota) - substrate requirements and fruiting dynamics, species-specific primer

description: Supplementary Materals for the paper "Strict substrate requirements alongside rapid substrate turnover may be indicative of an early colonization: a case study of Pleurotus calyptratus (Agaricales, Basidiomycota)" (Prylutskyi et al, 2021). Pleurotus calyptratus is a wood-inhabiting oyster mushroom associated with Populus tremula and P. alba. This fungus is rather common in Ukraine but considered rare in many other European countries. Aiming to find causes for variation in rarity, we conducted habitat mapping and repeated surveys to understand substrate requirements and fruiting dynamics of P. calyptratus. We showed that the fruiting is strictly associated with a tree’s late life and early decay stages, and not with physical properties of a tree trunk like volume or position. This timespan of substrate suitability lasts for 1−3 years, determining rapid substrate turnover. We also detected DNA of P. calyptratus in living tissues of visually healthy trees, meaning its latent development in the hosts. This factor supposedly helps the fungus to pioneer in a fungal succession. Despite the high spatial and temporal variation in fruiting, five annual surveys demonstrated no significant trends in P. calyptratus population’s dynamics, and supported the hypothesis of random variation in fruiting, driven mostly by dynamics of forest stands. Therefore, we hypothesize that P. calyptratus’ relative abundance in Ukraine is explained by continuous substrate supply from large homogenous aspen stands that are rare in the rest of Europe due to intensive management. Data description: SM1 - Full description of species-specific DNA primer development for Pleurotus calyptratus (autors - Olexii Solodiankin, Maryna Kit, Iryna Yatsiuk) SM2 - archive with full Hmsc model for substrate requirements of Pleurotus calyptratus. Data, R-script, fitted models included. Unpack the archive and start with the README.txt. SM3 - archive with full Hmsc model for fruiting spatial and temporal dynamics of Pleurotus calyptratus (2013-2018 years). Data, R-scripts, fitted models and outputs included. Unpack the archive and start with the README.txt. SM4 - full output of the generalized linear model for occupancy of Pleurotus calyptratus
DOI: 10.25381/cput.21546108.v1
title: Meteorological and load profile data set

description: 2021FEBEREC-STD-117 <br> The data set consists of the hourly load demand, hourly solar irradiance and hourly wind speed of a community located in Northern part of Nigeria named Bara, Kirfi Local Government area of Bauchi state, Nigeria. The hourly solar resource data and wind resource data of the community for a period of one year is obtained from an existing database of the Power Data Access Viewer of National Aeronautic and Space Administration (NASA).
DOI: 10.6084/m9.figshare.13057904.v1
title: Digitisation of Scofield Hartree-Fock Normalizations and Binding Energies Tabulated Data

description: This document provides a digitised version of the tabulated Hartree-Fock normalizations and binding energies (Table A1) calculated by J. H. Scofield (1973) from Lawrence Livermore National Laboratory (LLNL). The data from the original paper was mined, checked and deposited into a Microsoft Excel spreadsheet for easy access.<br>