cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10678817
title: ¿La contaminación ambiental provoca un aumento en el número de defunciones?

description: Se quiere estudiar si existe una relación entre la calidad del aire y el número de muertes por enfermedades, cancerígenas y no cancerígenas, de tipo respiratorio. Para ello, se ha comparado la emisión de NOx, PST, CO, SOx y COVNM (t/año) en 6 comunidades autónomas diferentes (Barcelona, Cantabria, Castilla-La Mancha, Madrid y Murcia) con el número de fallecidos por enfermedades respiratorias en esas comunidades autónomas. Se ha decidido que las variables de interés para el estudio son el año, la comunidad autónoma, el sexo,el rango de edad, si la enfermedad es cancerígena o no, el tipo de contaminante, la concentración del contaminante, muertes absolutas, población y muertes relativas.
DOI: 10.5066/p97xof91
title: Community Exposure to Future Coastal Hazards in U.S. South Carolina, reference year 2020

description: The data set contains information on potential population, economic, land cover, and infrastructure flooding exposure for coastal communities of the state of South Carolina, USA.  The type of information includes U.S. Census data on the number and types of residents, InfoGroup data on numbers and types of employees, county parcel values, NLCD land cover estimates, and infrastructure data on roads, rail, and critical facilities from a variety of sources.
DOI: 10.34740/kaggle/dsv/7673637
title: Public Opinion on Climate Change (Updated Daily)
DOI: 10.5066/p9dcc1hk
title: Community Exposure to Future Coastal Hazards for Georgia, USA

description: The data set contains information on potential population, economic, land cover, and infrastructure exposure to coastal hazards for coastal communities of the state of Georgia, USA.  The type of information includes U.S. Census data on the number and types of residents, InfoGroup data on numbers and types of employees, county parcel values, NLCD land cover estimates, and infrastructure data on roads, rail, and critical facilities from a variety of sources.
DOI: 10.6084/m9.figshare.11937564
title: Additional file 14 of Evolution of PHAS loci in the young spike of Allohexaploid wheat

description: Additional file 14: Supplementary Table 6. The predicted targets in MIT with scores less than four, as determined by the Targetfinder program.
DOI: 10.5066/p9lexxc1
title: Community Exposure to Future Coastal Hazards for U.S. Washington, reference year 2020

description: The data set contains information on potential population, economic, land cover, and infrastructure flooding exposure for coastal communities of the state of Washington, USA.  The type of information includes U.S. Census data on the number and types of residents, Data-Axle data on numbers and types of employees, county parcel values, NLCD land cover estimates, and infrastructure data on roads, rail, and critical facilities from a variety of sources.
DOI: 10.5281/zenodo.10689557
title: De novo transcriptome assembly for Heterosigma akashiwo Hak10

description: Raw reads were pre-processed by removing the adaptors and low-quality reads using BBMap. The filtered reads were normalized for depth based on kmer counts using BBNorm function. De novo transcriptomes were generated using both Trinity and velvet-oases. CD-HIT-EST was used to merge the resulting two de novo transcriptomes and reduce the transcript redundancy to 90% similarity and unique genes were predicted using transdecoder. Raw reads can be found in GenBank PRJNA1072663.
DOI: 10.5281/zenodo.10689558
title: De novo transcriptome assembly for Heterosigma akashiwo Hak10

description: Raw reads were pre-processed by removing the adaptors and low-quality reads using BBMap. The filtered reads were normalized for depth based on kmer counts using BBNorm function. De novo transcriptomes were generated using both Trinity and velvet-oases. CD-HIT-EST was used to merge the resulting two de novo transcriptomes and reduce the transcript redundancy to 90% similarity and unique genes were predicted using transdecoder. Raw reads can be found in GenBank PRJNA1072663.
DOI: 10.5281/zenodo.10689664
title: Dataset for the paper "Evaluating the Significance of Outdoor Advertising from Driver's Perspective Using Computer Vision" - TERAIS

description: Data for: Evaluating the Significance of Outdoor Advertising from Driver's Perspective Using Computer Vision

aka: BillBoardLamac

Published at DISA2024, doi: https://dx.doi.org/10.1109/DISA59116.2023.10308914

Also available as pre-print at: https://arxiv.org/abs/2311.07390
DOI: 10.5281/zenodo.10689665
title: Dataset for the paper "Evaluating the Significance of Outdoor Advertising from Driver's Perspective Using Computer Vision" - TERAIS

description: Data for: Evaluating the Significance of Outdoor Advertising from Driver's Perspective Using Computer Vision

aka: BillBoardLamac

Published at DISA2024, doi: https://dx.doi.org/10.1109/DISA59116.2023.10308914

Also available as pre-print at: https://arxiv.org/abs/2311.07390
DOI: 10.5066/p9q2ccch
title: Community Exposure to Future Coastal Hazards in U.S. North Carolina, reference year 2020

description: The data set contains information on potential population, economic, land cover, and infrastructure exposure to coastal hazards for coastal communities of the state of North Carolina, USA.  The type of information includes U.S. Census data on the number and types of residents, InfoGroup data on numbers and types of employees, county parcel values, NLCD land cover estimates, and infrastructure data on roads, rail, and critical facilities from a variety of sources.
DOI: 10.6084/m9.figshare.11937591
title: Additional file 18 of Evolution of PHAS loci in the young spike of Allohexaploid wheat

description: Additional file 18: Supplementary Table 10. The target cleavage information in AM (cold stress: SRR3690679) from the degradome datasets.
DOI: 10.6084/m9.figshare.11937591.v1
title: Additional file 18 of Evolution of PHAS loci in the young spike of Allohexaploid wheat

description: Additional file 18: Supplementary Table 10. The target cleavage information in AM (cold stress: SRR3690679) from the degradome datasets.
DOI: 10.5066/p9v3xunq
title: Community Exposure to Future Coastal Hazards for Florida, USA

description: Socioeconomic impact estimates of community exposure to future coastal hazards are presented for communities along the coast of U.S. Florida.  The provided data were generated using the Hazard Exposure Reporting and Analytics (HERA) web application (www.usgs.gov/apps/hera/). HERA uses geospatial analysis of socioeconomic indicators (population, economic, land cover, and infrastructure) in combination with flood hazard zones developed by the USGS Pacific Coastal and Marine Science Center to quantify populations and assets at risk under present and future scenarios of sea level rise and storm conditions. The type of information includes U.S. Census data on the number and types of residents, InfoGroup data on numbers and types of employees, county parcel values, NLCD land cover estimates, and infrastructure data on roads, rail, and critical facilities from a variety of sources.
DOI: 10.6084/m9.figshare.6694730
title: Additional file 1: of Comparative genome-wide characterization leading to simple sequence repeat marker development for Nicotiana

description: Table S1 Genomic SSR distribution of Nicotiana. (XLS 469 kb)
DOI: 10.6084/m9.figshare.6694730.v1
title: Additional file 1: of Comparative genome-wide characterization leading to simple sequence repeat marker development for Nicotiana

description: Table S1 Genomic SSR distribution of Nicotiana. (XLS 469 kb)
DOI: 10.5281/zenodo.10689625
title: Are pools created when restoring extracted peatlands biogeochemically similar to natural peatland pools?

description: The .csv file from this entrance comprises data used in Jolin et al. "Are pools created when restoring extracted peatlands biogeochemically similar to natural peatland pools?". It includes peatland pool biogeochemical data from natural and created pools of eastern Canada sampled during the 2020 and 2021 growing seasons. 

Variable units are shown in column headers.
DOI: 10.5281/zenodo.10689626
title: Are pools created when restoring extracted peatlands biogeochemically similar to natural peatland pools?

description: The .csv file from this entrance comprises data used in Jolin et al. "Are pools created when restoring extracted peatlands biogeochemically similar to natural peatland pools?". It includes peatland pool biogeochemical data from natural and created pools of eastern Canada sampled during the 2020 and 2021 growing seasons. 

Variable units are shown in column headers.
DOI: 10.5281/zenodo.10672609
title: Functional annotation of the reference transcriptome for Karenia brevis Wilson, SP1,SP3, CCMP2229, Kbr90

description: Raw reads were pre-processed by removing the adaptors and low-quality reads using BBMap. The filtered reads were normalized for depth based on kmer counts using BBNorm function. De novo transcriptomes were generated using both Trinity and velvet-oases. CD-HIT-EST was used to merge the two de novo transcriptomes and reduce the transcript redundancy to 90% similarity and generate unique genes. Functional annotation was performed using diamond blastp function (Buchfink et al. 2021)
DOI: 10.5281/zenodo.10672610
title: Functional annotation of the reference transcriptome for Karenia brevis Wilson, SP1,SP3, CCMP2229, Kbr90

description: Raw reads were pre-processed by removing the adaptors and low-quality reads using BBMap. The filtered reads were normalized for depth based on kmer counts using BBNorm function. De novo transcriptomes were generated using both Trinity and velvet-oases. CD-HIT-EST was used to merge the two de novo transcriptomes and reduce the transcript redundancy to 90% similarity and generate unique genes. Functional annotation was performed using diamond blastp function (Buchfink et al. 2021)
DOI: 10.6084/m9.figshare.12986392
title: Additional file 2 of Mining and evolution analysis of lateral organ boundaries domain (LBD) genes in Chinese white pear (Pyrus bretschneideri)

description: Additional file 2: Table S1. The members of PbrLBD gene family in Chinese White Pear genome.
DOI: 10.6084/m9.figshare.12986392.v1
title: Additional file 2 of Mining and evolution analysis of lateral organ boundaries domain (LBD) genes in Chinese white pear (Pyrus bretschneideri)

description: Additional file 2: Table S1. The members of PbrLBD gene family in Chinese White Pear genome.
DOI: 10.6084/m9.figshare.7743512
title: Near-infrared spectroscopy parameters in patients undergoing continuous venovenous hemodiafiltration

description: ABSTRACT Objective To investigate the impacts of continuous venovenous hemodiafiltration on the microcirculation in patients with acute kidney injury. Methods A prospective observational pilot study conducted in a 40-bed, open clinical-surgical intensive care unit of a private tertiary care hospital located in the city of São Paulo (SP), Brazil. Microcirculation was assessed using near-infrared spectroscopy by means of a 15mm probe placed over the thenar eminence. Vascular occlusion test was performed on the forearm to be submitted to near-infrared spectroscopy by inflation of a sphygmomanometer cuff to 30mmHg higher than the systolic arterial pressure. The primary endpoint was the assessment of near-infrared spectroscopy-derived parameters immediately before, 1, 4 and 24 hours after the initiation of continuous venovenous hemodiafiltration. Results Nine patients were included in this pilot study over a period of 2 months. Minimum tissue oxygen saturation measured during the vascular occlusion test was the only near-infrared spectroscopy-derived parameter to differed over the time (decrease compared to baseline values up to 24 hours after initiation of continuous venovenous hemodiafiltration). Conclusion The impacts of microcirculatory dysfunction on clinical outcomes of patients undergoing to continuous venovenous hemodiafiltration need to be further investigated.
DOI: 10.6084/m9.figshare.7743512.v1
title: Near-infrared spectroscopy parameters in patients undergoing continuous venovenous hemodiafiltration

description: ABSTRACT Objective To investigate the impacts of continuous venovenous hemodiafiltration on the microcirculation in patients with acute kidney injury. Methods A prospective observational pilot study conducted in a 40-bed, open clinical-surgical intensive care unit of a private tertiary care hospital located in the city of São Paulo (SP), Brazil. Microcirculation was assessed using near-infrared spectroscopy by means of a 15mm probe placed over the thenar eminence. Vascular occlusion test was performed on the forearm to be submitted to near-infrared spectroscopy by inflation of a sphygmomanometer cuff to 30mmHg higher than the systolic arterial pressure. The primary endpoint was the assessment of near-infrared spectroscopy-derived parameters immediately before, 1, 4 and 24 hours after the initiation of continuous venovenous hemodiafiltration. Results Nine patients were included in this pilot study over a period of 2 months. Minimum tissue oxygen saturation measured during the vascular occlusion test was the only near-infrared spectroscopy-derived parameter to differed over the time (decrease compared to baseline values up to 24 hours after initiation of continuous venovenous hemodiafiltration). Conclusion The impacts of microcirculatory dysfunction on clinical outcomes of patients undergoing to continuous venovenous hemodiafiltration need to be further investigated.
DOI: 10.17909/bqsb-bs30
title: HST observations of stellar counterpart of an enormous HI cloud in Virgo

description: These ACS/WFC F606W and F814W observations are of the extremely low mass, blue stellar counterpart to the enormous HI cloud complex in the Virgo galaxy cluster known as the ALFALFA Virgo 7 complex (Kent et al. 2007, 2009).
DOI: 10.17909/k2mg-y246
title: HST observations of stellar counterpart of an enormous HI cloud in Virgo

description: These ACS/WFC F606W and F814W observations are of the extremely low mass, blue stellar counterpart to the enormous HI cloud complex in the Virgo galaxy cluster known as the ALFALFA Virgo 7 complex (Kent et al. 2007, 2009).
DOI: 10.5281/zenodo.10685747
title: How well do we know the seasonal cycle in ocean bottom pressure?

description: Sa_harmonics.mat: Annual harmonics from monthly pb in ECCOv4r5, JPL GRACE, and GSFC GRACE between 2002 and 2022.

Ssa_harmonics.mat: Semiannual harmonics from monthly pb in ECCOv4r5, JPL GRACE, and GSFC GRACE between 2002 and 2022.

Sta_harmonics.mat: Terannual harmonics from monthly pb in ECCOv4r5, JPL GRACE, and GSFC GRACE between 2002 and 2022.

GAL_LA_Sa_std.mat: Standard deviation of annual harmonics for gravitational attraction and loading effects due to atmospheric mass over land and changes in land ice and water storage. 

GAL_LA_Ssa_std.mat: Standard deviation of semiannual harmonics for gravitational attraction and loading effects due to atmospheric mass over land and changes in land ice and water storage. 

g1_fitcycleOBP.m: matlab script used to calculate seasonal harmonics from OBP records.

get_EQphase.m: function called in g1_fitcycleOBP.m for phase estimates.
DOI: 10.5281/zenodo.10685748
title: How well do we know the seasonal cycle in ocean bottom pressure?

description: Sa_harmonics.mat: Annual harmonics from monthly pb in ECCOv4r5, JPL GRACE, and GSFC GRACE between 2002 and 2022.

Ssa_harmonics.mat: Semiannual harmonics from monthly pb in ECCOv4r5, JPL GRACE, and GSFC GRACE between 2002 and 2022.

Sta_harmonics.mat: Terannual harmonics from monthly pb in ECCOv4r5, JPL GRACE, and GSFC GRACE between 2002 and 2022.

GAL_LA_Sa_std.mat: Standard deviation of annual harmonics for gravitational attraction and loading effects due to atmospheric mass over land and changes in land ice and water storage. 

GAL_LA_Ssa_std.mat: Standard deviation of semiannual harmonics for gravitational attraction and loading effects due to atmospheric mass over land and changes in land ice and water storage. 

g1_fitcycleOBP.m: matlab script used to calculate seasonal harmonics from OBP records.

get_EQphase.m: function called in g1_fitcycleOBP.m for phase estimates.
DOI: 10.6084/m9.figshare.6695213
title: Additional file 1: of DeepCRISPR: optimized CRISPR guide RNA design by deep learning

description: A comprehensive list of hypothesis-based and learning-based sgRNA on-target design tools and the selected candidates in our comparison study. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.25040777
title: Bayesian Integrative Region Segmentation in Spatially Resolved Transcriptomic Studies

description: The spatially resolved transcriptomic study is a recently developed biological experiment that can measure gene expressions and retain spatial information simultaneously, opening a new avenue to characterize fine-grained tissue structures. In this article, we propose a nonparametric Bayesian method named BINRES to carry out the region segmentation for a tissue section by integrating all the three types of data generated during the study—gene expressions, spatial coordinates, and the histology image. BINRES is able to capture more subtle regions than existing statistical partitioning models that only partially make use of the three data modes and is more interpretable than neural-network-based region segmentation approaches. Specifically, due to a nonparametric spatial prior, BINRES does not require a prespecified region number and can learn it automatically. BINRES also combines the image and the gene expressions in the Bayesian consensus clustering framework and thus flexibly adjusts their label alignment contribution weights in a data-adaptive manner. A computationally scalable extension is developed for large-scale studies. Both simulation studies and the real application to three mouse spatial transcriptomic datasets demonstrate that BINRES outperforms the competing methods and easily achieves the uncertainty quantification of the integrative partition. The R package of the proposed method is publicly available at https://github.com/yinqiaoyan/BINRES. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.25076129
title: Consistent community detection in inter-layer dependent multi-layer networks

description: Community detection in multi-layer networks, which aims at finding groups of nodes with similar connective patterns among all layers, has attracted tremendous interests in multi-layer network analysis. Most existing methods are extended from those for single-layer networks, which assume that different layers are independent. In this paper, we propose a novel community detection method in multi-layer networks with inter-layer dependence, which integrates the stochastic block model (SBM) and the Ising model. The community structure is modeled by the SBM model and the inter-layer dependence is incorporated via the Ising model. An efficient alternative updating algorithm is developed to tackle the resultant optimization task. Moreover, the asymptotic consistencies of the proposed method in terms of both parameter estimation and community detection are established, which are supported by extensive simulated examples and a real example on a multi-layer malaria parasite gene network.
DOI: 10.7266/n74747w4
title: CTD data at deep water seeps collected aboard R/V Endeavor cruises EN509 and EN510 in the northern Gulf of Mexico from 2012-05-26 to 2012-07-04
DOI: 10.5281/zenodo.10689686
title: Functional annotation of the reference transcriptome for Heterosigma akashiwo Hak10

description: De novo transcriptomes generated using both Trinity and velvet-oases were merged with CD-HIT-EST to reduce the transcript redundancy to 90% similarity and generate unique genes. Functional annotation was performed using DIAMOND blastp function (Buchfink et al. 2021).
DOI: 10.5281/zenodo.10689685
title: Functional annotation of the reference transcriptome for Heterosigma akashiwo Hak10

description: De novo transcriptomes generated using both Trinity and velvet-oases were merged with CD-HIT-EST to reduce the transcript redundancy to 90% similarity and generate unique genes. Functional annotation was performed using DIAMOND blastp function (Buchfink et al. 2021).
DOI: 10.7934/p5097
title: New materials of plesiacerathere (Perissodactyla, Rhinocerotidae) from the late Early Miocene of Northern China (project)
DOI: 10.6084/m9.figshare.25145819
title: Yeast Macroecology 2023

description: Intermediate data files that can be used to reproduce https://doi.org/10.1073/pnas.2316031121<b>species_sample_coordinates.txt </b>- all species coordinates after filtering steps as described in the manuscript<b>training_data.txt </b>- training data used for random forest species distribution models, details for each environmental variable are provided in supplemental dataset S6<b>species_distribution_maps</b><b>/</b><b> </b>- directory containing species distribution maps (pngs) predicted for every species in study that met performance thresholds<b>species_distribution_rasters/ </b>- directory containing raster files representing the predicted geographic distributions of every species included in study that met performance thresholds<br>
DOI: 10.5281/zenodo.10689724
title: Dataset for "Structural complexity and benthic metabolism: resolving the links between carbon cycling and biodiversity in restored seagrass meadows"

description: This dataset accompanies the article "Structural complexity and benthic metabolism: resolving the links between carbon cycling and biodiversity in restored seagrass meadows" accepted for publication in Biogeosciences (https://doi.org/10.5194/bg-2023-173). The dataset includes benthic fluxes and biodiversity data in from bare sediments, restored Zostera marina and a natural Z. marina meadow collected in Gåsö, Sweden (58.2325, 11.3984) between July 05 - July 20, 2022.
DOI: 10.5281/zenodo.8363550
title: Dataset for "Structural complexity and benthic metabolism: resolving the links between carbon cycling and biodiversity in restored seagrass meadows"

description: This dataset accompanies the article "Structural complexity and benthic metabolism: resolving the links between carbon cycling and biodiversity in restored seagrass meadows" accepted for publication in Biogeosciences (https://doi.org/10.5194/bg-2023-173). The dataset includes benthic fluxes and biodiversity data in from bare sediments, restored Zostera marina and a natural Z. marina meadow collected in Gåsö, Sweden (58.2325, 11.3984) between July 05 - July 20, 2022.
DOI: 10.5281/zenodo.8363551
title: Dataset for "Structural complexity and benthic metabolism: resolving the links between carbon cycling and biodiversity in restored seagrass meadows"

description: This dataset accompanies the article "Structural complexity and benthic metabolism: resolving the links between carbon cycling and biodiversity in restored seagrass meadows" submitted to Biogeosciences. The dataset includes benthic fluxes and biodiversity data in from bare sediments, restored <em>Zostera marina</em> and a natural <em>Z. marina</em> meadow collected in Gåsö (58.2325, 11.3984) between July 05 - July 20, 2022.
DOI: 10.5517/ccdc.csd.cc2gr5hx
title: CCDC 2286389: Experimental Crystal Structure Determination

description: Related Article: Alpesh Ramanlal Patel, Aggie Lawer, Mohan Bhadbhade, Luke Hunter|2024|Org.Biomol.Chem.|22|1608|doi:10.1039/D3OB02016A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.