cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16929319
title: vdjHopper Example Data

description: vdjHopper Example Data

This repository provides example single-cell V(D)J sequencing files used by the vdjHopper R package. The data are intended for demonstration and teaching purposes only, allowing users to test the package’s decontamination, IgBLAST integration, and chain pairing workflows without requiring large raw datasets.

Contents

The dataset contains representative files derived from the 10x Genomics NSCLC tumor TCR enrichment dataset .All files have been subset or downsampled to reduce size and ensure the total archive remains <5 MB.





all_contig_annotations.csv.gzFiltered contig annotations (CSV, compressed). Contains selected columns such as barcode, chain, cdr3, v_gene, and j_gene.




all_contig.fasta.gzRepresentative TCR sequences in FASTA format.




all_contig.fastq.gzA small subset of raw sequencing reads in FASTQ format, provided for demonstration only.




 all_contig.bamFull BAM alignment file (~3.5 GB). This file is not included in the CRAN package build but can be downloaded from this Zenodo record if required for advanced tutorials. Users should call vdjHopper::fetch_example_data() to retrieve and cache this file programmatically.



License and Source





Original dataset: 10x Genomics – NSCLC tumor TCR enrichment dataset




License: CC BY 4.0



When using this data, please cite both 10x Genomics.
DOI: 10.15468/dl.6mgmb4
title: Occurrence Download

description: A dataset containing 35698 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Juglans nigra"
 ]
}

 The dataset includes 35698 records from 589 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032909-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/kn7q1-na562
title: U2OS-Tubulin Tracker Green

description: U2OS cells stained with tubulin tracker to locate midbodies. Cryo-FIB milling is used to make the sample thinner.
description: <strong>Tilt Series Date:</strong> 2017-05-18</p>
<strong>Data Taken By:</strong> Wei Zhao</p>
<strong>Species / Specimen:</strong> U2OS</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 2°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Undefined</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD-patch tracking</p>
<strong>Purification / Growth Conditions / Treatment:</strong> U2OS cells grown on Au finder grids for 28-48 hours.Grids coated with PL.</p>
<strong>Sample Preparation:</strong> Cells were stained with tubulin tracker and Hoechst before freezing. Plunge frozen using the vitrobot III blotted manually from back(drain time 1s).</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wza2017-05-18-5/rawdata/</p>TS6.mrc,  Tilt Series (Pixel Size 0.371 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wza2017-05-18-5/rawdata/TS6.mrc"
        > <i class="download icon"></i> Download </a></p>

        TS6_bin2.rec,  Reconstruction (Pixel Size 0.0 nm), 135.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wza2017-05-18-5/3dimage_85644/TS6_bin2.rec"
        > <i class="download icon"></i> Download </a></p>

        TS6_bin2.rec,  Reconstruction (Pixel Size 0.0 nm), 135.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wza2017-05-18-5/3dimage_86810/TS6_bin2.rec"
        > <i class="download icon"></i> Download </a></p>

        zap000.png,  1.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wza2017-05-18-5/file_18151/zap000.png"
        > <i class="download icon"></i> Download </a></p>

        wza2017-05-18-5_slicer18437.png, , 1.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/wza2017-05-18-5_slicer18437.png"
        > <i class="download icon"></i> Download </a></p>

        wza2017-05-18-5_slicer18438.png,  Tubular structure of U2OS cell, 1.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/wza2017-05-18-5_slicer18438.png"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6kpar-gtv23
title: Coxiella burnetii_wt

description: Nine Mile phase II clone 4 (NMIIC4) strain. Wild-type  cells day-5 culture.
description: <strong>Tilt Series Date:</strong> 2016-09-09</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Coxiella burnetii</p>
<strong>Strain:</strong> Nine Mile phase II clone 4</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> TOMO3D</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal using Caltech tomography pipeline.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in Robert Heinzen's lab @NIAID and ~50 ul cells were sent to us.</p>
<strong>Sample Preparation:</strong> Refer to Heinzen lab</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-09-09-32/rawdata/</p>Coxiella_Wt_D50037.mrc,  Tilt Series (Pixel Size 0.39 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-09-09-32/rawdata/Coxiella_Wt_D50037.mrc"
        > <i class="download icon"></i> Download </a></p>

        Coxiella_Wt_D50037_SIRT_1k.rec,  Reconstruction (Pixel Size 0.0 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-09-09-32/3dimage_108061/Coxiella_Wt_D50037_SIRT_1k.rec"
        > <i class="download icon"></i> Download </a></p>

        Coxiella_Wt_D50037.ali,  577.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-09-09-32/file_24057/Coxiella_Wt_D50037.ali"
        > <i class="download icon"></i> Download </a></p>

        Coxiella_Wt_D50037.tlt,  648.0 B  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-09-09-32/file_24058/Coxiella_Wt_D50037.tlt"
        > <i class="download icon"></i> Download </a></p>

        T4SS.mod,  987.0 B  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-09-09-32/file_24059/T4SS.mod"
        > <i class="download icon"></i> Download </a></p>

        T4SS_all.mod,  1.0 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-09-09-32/file_24060/T4SS_all.mod"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.phwmf9
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barnea truncata",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032913-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/pmmwe-9bw13
title: V. cholerae

description: for MSHA pili
description: <strong>Tilt Series Date:</strong> 2016-01-04</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O1 biovar El Tor</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> SIRT</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-45/3dimage_73049/</p>20160104_Vcholerae_MSHA_10045_SIRT_2K.rec,  Reconstruction (Pixel Size 0.0 nm), 14.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-45/3dimage_73049/20160104_Vcholerae_MSHA_10045_SIRT_2K.rec"
        > <i class="download icon"></i> Download </a></p>

        20160104_Vcholerae_MSHA_10045_part121_1.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-45/3dimage_72074/20160104_Vcholerae_MSHA_10045_part121_1.rec"
        > <i class="download icon"></i> Download </a></p>

        20160104_Vcholerae_MSHA_10045.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-01-04-45/rawdata/20160104_Vcholerae_MSHA_10045.mrc"
        > <i class="download icon"></i> Download </a></p>

        ycw2016-01-04-45_slicer19188.png,  a slice near to the bottom of the cell shows a somewhat higher density of ribosomes., 738.3 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/ycw2016-01-04-45_slicer19188.png"
        > <i class="download icon"></i> Download </a></p>

        ycw2016-01-04-45_slicer19189.png,  a slice near to the top of the cell shows a higher density of ribosomes., 728.9 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/ycw2016-01-04-45_slicer19189.png"
        > <i class="download icon"></i> Download </a></p>

        ycw2016-01-04-45_slicer19190.png,  730.8 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/ycw2016-01-04-45_slicer19190.png"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/3pvnp-88516
title: Hippocampus Neurons

description: Raw data files of Hippocampus Neurons
description: <strong>Tilt Series Date:</strong> 2020-05-12</p>
<strong>Data Taken By:</strong> Stephen Carter</p>
<strong>Species / Specimen:</strong> Rat Hippocampal Neuron (cultured)</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-55.0°, 55.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -10.0 μm,  magnification: 33000x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2020-05-12-4/rawdata/</p>tomo11.mrc,  Tilt Series (Pixel Size 2.65 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2020-05-12-4/rawdata/tomo11.mrc"
        > <i class="download icon"></i> Download </a></p>

        tomo11.rec,  Reconstruction (Pixel Size 10.6 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2020-05-12-4/3dimage_116899/tomo11.rec"
        > <i class="download icon"></i> Download </a></p>

        tomo11_full.rec,  Reconstruction (Pixel Size 0.0 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2020-05-12-4/3dimage_118677/tomo11_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/s0fcn-3zk61
title: U2OS cells

description: Raw data files of U2OS cells
description: <strong>Tilt Series Date:</strong> 2017-09-17</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> U2OS</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-14/rawdata/</p>U2OS_TS23.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.5 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-14/rawdata/U2OS_TS23.mrc"
        > <i class="download icon"></i> Download </a></p>

        U2OS_TS23_4bin_DB.rec,  Reconstruction (Pixel Size 0.0 nm), 285.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-14/3dimage_88362/U2OS_TS23_4bin_DB.rec"
        > <i class="download icon"></i> Download </a></p>

        U2OS_TS23_4bin_orig_DB.st,  96.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-14/file_18692/U2OS_TS23_4bin_orig_DB.st"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/prdkc-zc030
title: U2OS cells

description: Raw data files of U2OS cells
description: <strong>Tilt Series Date:</strong> 2017-09-17</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> U2OS</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-16/rawdata/</p>U2OS_TS25.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-16/rawdata/U2OS_TS25.mrc"
        > <i class="download icon"></i> Download </a></p>

        U2OS_TS25_4bin_DB.rec,  Reconstruction (Pixel Size 0.0 nm), 240.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-16/3dimage_88364/U2OS_TS25_4bin_DB.rec"
        > <i class="download icon"></i> Download </a></p>

        U2OS_TS25_4bin_orig_DB.st,  105.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-16/file_18694/U2OS_TS25_4bin_orig_DB.st"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/sbnxv-tks23
title: U2OS cells

description: Raw data files of U2OS cells
description: <strong>Tilt Series Date:</strong> 2017-09-17</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> U2OS</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-15/rawdata/</p>U2OS_TS24.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-15/rawdata/U2OS_TS24.mrc"
        > <i class="download icon"></i> Download </a></p>

        U2OS_TS24_trunc_4bin_DB.rec,  Reconstruction (Pixel Size 0.0 nm), 261.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-15/3dimage_88363/U2OS_TS24_trunc_4bin_DB.rec"
        > <i class="download icon"></i> Download </a></p>

        U2OS_TS24_trunc_4bin_orig_DB.st,  105.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-15/file_18693/U2OS_TS24_trunc_4bin_orig_DB.st"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/va919-kaj18
title: HeLa cells expressing TRIM5α-YFP

description: Raw data files of HeLa cells expressing TRIM5α-YFP
description: <strong>Tilt Series Date:</strong> 2016-09-17</p>
<strong>Data Taken By:</strong> Stephen Carter</p>
<strong>Species / Specimen:</strong> Hela cells expressing TRIM5a-YFP</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -9.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at s://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2016-09-17-9/3dimage_79288/</p>tomography82nd.rec,  Reconstruction (Pixel Size 24.0 nm), 2.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2016-09-17-9/3dimage_79288/tomography82nd.rec"
        > <i class="download icon"></i> Download </a></p>

        tomography82nd.mrc,  Tilt Series (Pixel Size 6.0 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2016-09-17-9/rawdata/tomography82nd.mrc"
        > <i class="download icon"></i> Download </a></p>

        tomography8join_orig_full.rec,  Reconstruction (Pixel Size 0.0 nm), 668.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2016-09-17-9/3dimage_91268/tomography8join_orig_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/h15rb-6xb67
title: U2OS cells

description: Raw data files of U2OS cells
description: <strong>Tilt Series Date:</strong> 2017-09-17</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> U2OS</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-13/rawdata/</p>U2OS_TS22.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-13/rawdata/U2OS_TS22.mrc"
        > <i class="download icon"></i> Download </a></p>

        U2OS_TS22_trunc_4bin_DB.rec,  Reconstruction (Pixel Size 0.0 nm), 222.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-13/3dimage_88361/U2OS_TS22_trunc_4bin_DB.rec"
        > <i class="download icon"></i> Download </a></p>

        U2OS_TS22_trunc_4bin_orig_DB.st,  85.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-13/file_18691/U2OS_TS22_trunc_4bin_orig_DB.st"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dsfzn-91g26
title: U2OS cells

description: Raw data files of U2OS cells
description: <strong>Tilt Series Date:</strong> 2017-09-17</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> U2OS</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-09-17-1/rawdata/</p>U2OS_TS10.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
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        U2OS_TS10_trunc_bin4_DB.rec,  Reconstruction (Pixel Size 0.0 nm), 288.6 MB  
        
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        U2OS_TS10_trunc_bin4_orig_DB.st,  105.1 MB  
        
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