cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.j7hemc
title: Occurrence Download

description: A dataset containing 797 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Pandemis cinnamomeana (Treitschke, 1830)"
 ]
}

 The dataset includes 797 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009462-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28219430.v1
title: <b>Utilization of bio-based monomer derived from camelina oil and itaconic acid </b><b>for the synthesis of film-forming latexes</b>

description: Data for research article <b>Utilization of bio-based monomer derived from camelina oil and itaconic acid </b><b>for the synthesis of film-forming latexes</b> by Jana Machotova et al.
DOI: 10.6084/m9.figshare.28558208.v1
title: Supplementary Material for: A novel variant in an intron splicing enhancer associated with familial growth hormone deficiency

description: Introduction: Variants in the intron splicing enhancer (ISE) of intron 3 in the GH1 gene are implicated in the etiology of isolated growth hormone deficiency Type 2 (Type II IGHD). 

Methods: Exome sequencing was performed to screen variants that co-segregated with IGHD in an extended family with Type II IGHD. The causality of the candidate variant was assessed using bioinformatic tools and previous in vitro studies. 

Results: Exome sequencing identified a rare intronic variant (NM_000515.5, c.291+34 G&gt;A) in the second XGGG repeat of ISE in intron 3 of GH1, which occurred de novo in the mother with IGHD and was passed onto her two affected children. The variant was previously shown in vitro to cause exon 3 skipping in 50% of the mRNAs and was predicted to create a new binding site for exonic splicing enhancer binding proteins (SR proteins). 

Conclusion: Our familial case reiterates the importance of intronic variants in the splicing enhancer region as a cause of IGHD. Consideration should be given to sequencing the splicing enhancer region in intron 3 of GH1 for patients who undergo genetic testing for growth hormone deficiency.
DOI: 10.6084/m9.figshare.14684328.v1
title: augustus_megre.fa.transdecoder.pep

description: Amino acid sequence information<br>
DOI: 10.15468/dl.fsdh4v
title: Occurrence Download

description: A dataset containing 140372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Portulaca oleracea L.",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Occurrence evidence)"
 ]
}

 The dataset includes 140372 records from 888 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009454-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26376412.v1
title: Global Estimate of Mesopelagic Mesozooplankton Biomass data

description: The scripts and data used in this study are available online at <i>https://github.com/yuliaUU/Mesopel-Zoop-Biom</i>.
DOI: 10.6084/m9.figshare.14156540.v1
title: Figure 4 AFM Images

description: AFM images in Figure 4 of Browning, L.A.; Watterson, W.; Happe, E.; Silva, S.; Abril Valenzuela, R.; Smith, J.; Dierkes, M.P.; Taylor, R.P.; Plank, N.O.V.; Marlow, C.A. Investigation of fractal carbon nanotube networks for biophilic neural sensing applications. <i>Nanomaterials </i><b>2021</b>, <i>11</i>, x.
DOI: 10.6084/m9.figshare.28377176.v2
title: Figure 6D

description: Time-lapse microscopy of NT <i>E. coli</i> cells infected by Goslar carrying GFP-tagged phage protein gp58. Images were collected at 5 second intervals starting 60 mpi for 90 seconds. Channel 1: GFP-tagged gp58, channel 2 = DNA (DAPI).
DOI: 10.6084/m9.figshare.7890500.v1
title: gVCF_NA18641

description: 1000 Genomes gVCF mapped to hs37d5 for NA18641. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.1314604_d2
title: Data Record 2: Secondary dsRNA screen data

description: Secondary dsRNA screen data.
DOI: 10.6084/m9.figshare.1517749.v1
title: Effects of ocean acidification and temperature increases on the photosynthesis of tropical reef calcified macroalgae

description: This data refers to a study undertaken to evaluate experimentally the effects of CO2-driven ocean acidification and temperature rises on the photosynthesis of calcified macroalgae inhabiting the intertidal region, a highly variable environment. The experiments were performed in a reef mesocosm in a tropical region on the Brazilian coast, using three species of frondose calcifying macroalgae (Halimeda cuneata, Padina gymnospora, and Tricleocarpa cylindrica) and crustose coralline algae. The acidification experiment consisted of three treatments with pH levels below those occurring in the region (-0.3, -0.6, -0.9). For the temperature experiment three temperature levels above those occurring naturally in the region (+1, +2, +4°C) were determined.
DOI: 10.6084/m9.figshare.23540019.v3
title: <strong>Estrogen’s effect on IgG glycosylation and total serum protein glycosylation in a healthy postmenopausal murine model</strong>

description: Raw data and supplementary data from the manuscript " <b>Impact of Estrogen on IgG Glycosylation and Serum Protein Glycosylation in a Murine Model of Healthy Postmenopause</b><b>"</b>
DOI: 10.4121/uuid:95690fdd-b13f-4bf9-a28d-c9b924696a96
title: Fatalities due to hurricane Harvey (2017)

description: In order to analyse the causes and circumstances of the fatalities due to hurricane Harvey (2017), a database of reported fatalities was compiled. Information about the victim (age, gender) and the circumstances of death (location, date, cause and circumstances of death) were included. The database is limited to fatalities that occurred within the first two weeks after landfall in Texas (August 25 - September 8, 2017) and that were directly relatable to hurricane Harvey. The dataset was compiled using both official government sources and media sources.
DOI: 10.6084/m9.figshare.19134215.v1
title: BIF (WSI)

description: Dicomized distinct proprietary files of microscope imaging modalities
DOI: 10.6084/m9.figshare.16909234.v3
title: Evaluating public health spending in the Philippines using an autoregressive distributed lag (ARDL) approach

description: This study aims to identify the determinants of the Philippine public health expenditure to understand and help the country's policymakers address issues concerning the country's rising yet small share of public health spending. Using time-series data from 1961 to 2019, this study employed the Autoregressive Distributed Lag (ARDL) approach to analyze the long- and short-run relationships between the Philippine national government’s health spending and select economic and health factors.
DOI: 10.6084/m9.figshare.16671214.v1
title: Database of postural control variables in a sitting task_Linear and nonlinear variables.xlsx

description: Dataset with linear and nonlinear variables of severeal voluteers who performed a sitting balance task. Force platform used to record the center of pressure.
DOI: 10.6084/m9.figshare.28749236.v1
title: Evaluate the enthalpy difference for trans/cis states of azobenzene SEs, Supplementary Fig. 9, 10

description: Supplementary Fig. 9Td_Ys.csv contains the dissolving temperatures for non-Azo SE motifs (n = 3)thermo_params.csv contains the thermodynamic parameters for the non-Azo SEs considered, which were simulated using MELTING5.Python script ('consider_free_energy.py') generates the bar plots of the measured dissolving temperatures (from 'Td_Ys.csv'), overlaid with the simulated values ('thermo_params.csv').<br>Supplementary Fig. 10cFrom the .csv files above ('Td_Ys.csv' and 'thermo_params.csv'), Python script ('with_logic_curve.py') generates the fitting curve in the form of logit function ('merged_with_eye_guide.pdf'), as presented in Supplementary Fig. 10c.<br>Supplementary Fig. 10d.csv files ('*_td.csv') contain the measured dissolving temperatures for Azo SE DNA motifs, which are already displayed in Fig. 3.Python script ('estimated.py') merges these values with the fitting curve mentioned above, generating estimates of the enthalpy differences for Azo-SEs ('estimated_ddh_check.pdf'), as presented in Supplementary Fig. 10d.
DOI: 10.4121/19589734.v1
title: Data underlying the publication: Change Detection in a Rural Landscape: A case study of processes and main driving factors and its response to land surface temperature and heat island phenomenon in Farim, Iran

description: This study aims to investigate the alteration of land use land cover (LULC) change and its response to change in land surface temperature (LST) and heat island phenomena of a rural district of Farim in the north of Iran from 1990 to 2020 using multi-date Landsat data. The LULC result suggests that most land cover type changes are dedicated to bare land with a 24.83 km2 gain (+80.87%). The result demonstrates that the main changing factors of the bare land are population/precipitation and temperature/population. Additionally, the effect of LULC change on seasonal LST and urban heat island (UHI) is also analyzed in this study. The result witnessed a significant rise of LST in both the summer and winter seasons of about 12.87 °C and 14.2 °C, respectively. The urban thermal field variance index (UTFVI) shows the strongest zone in the central area and no UTFVI zone in the surrounding region.
DOI: 10.6084/m9.figshare.28642825.v1
title: Additional file 1 of Psychometric assessment of the Moroccan version of the car, relax, alone, forget, friends, trouble (CRAFFT) scale among adolescent and young adults with a substance use disorder

description: Supplementary Material 1 ( Database)
DOI: 10.6084/m9.figshare.19131524.v1
title: Supplementary Material for: Meta-analysis of the genetic association between PTPN22, CTLA-4 variants and risk of uveitis

description: Background: Though the risk of PTPN22, CTLA-4 genetic variants with uveitis have been developed, the combined results still remain uncertain and controversial. Objectives: To perform a meta-analysis to estimate the precise association of PTPN22 (rs2488457, rs2476601) and CTLA-4 (rs231775, rs5742909, rs4553808, and rs3087243) polymorphisms with uveitis susceptibility. Method: Five electronic databases (PubMed, Embase, Web of Science, CBM, CNKI) were systematically searched for relevant literature up to July 20, 2021. All statistical analysis were evaluated by STATA 12.0 software and R programming language. Results: Our meta-results indicated that PTPN22 rs2488457 conferred positive susceptibility to uveitis (OR=1.18, 95%CI=1.02-1.38, p=0.029). In stratified analysis by ethnicity, rs2488457 C allele had a growing tendency towards uveitis in Asian region (OR=1.21, 95%CI=1.00-1.45, p=0.046). For CTLA-4 rs231775, subgroup analysis based on ethnicity manifested a negative association among uveitis individuals in Africa region (OR=0.25, 95%CI=0.19-0.33, p&lt;0.001). For CTLA-4 rs4553808, subgroup analysis by disease type revealed that GG genotype was associated with an elevated risk of Behcet's disease (OR=3.22, 95%CI=1.05-9.90, p=0.042). Conclusions: Our research revealed that PTPN22 rs2488457 conferred strong susceptibility to uveitis in general, especially in Asian region. CTLA-4 rs231775 conveyed protection against uveitis in African populations and CTLA-4 rs4553808 displayed an increased risk of Behcet's disease.
DOI: 10.6084/m9.figshare.25041767.v1
title: Development of Aptamer-DNAzyme Based Metal-Nucleic Acid Frameworks for Gastric Cancer therapy

description: All data from source data
DOI: 10.6084/m9.figshare.28049984.v1
title: Discrete and tide data: YSI and NUTs and Counts

description: Loko waiʻōpae and ʻōpaeʻula study at Makalawena, North Kona. Discrete sampling of nutrients and tidal shift sampling of YSI parameters along with ʻōpaeʻula counts.All data was collected at biocultural sites and therefore requires consent from the community, site caretakers, and authors before being used.
DOI: 10.6084/m9.figshare.10281839.v1
title: Heart DNA methylation 10 GTEx individuals

description: Heart DNA methylation from 10 healthy individuals.
DOI: 10.4121/14518380.v1
title: Data underlying the publication: More Similar Values, More Trust? - the Effect of Value Similarity on Trust in Human-Agent Interaction

description: This dataset contains the raw data and R data file utilized for conducting an user study examining the effect of value similarity on Human-AI agent trust.
DOI: 10.4121/19190237.v1
title: Raw data for "Two step activation of Ru-PN3P pincer catalysts for CO2 hydrogenation"

description: This dataset contains raw NMR data for new compounds used in the publication. The contents are stored in MNOVA format and can be used as a reference for reproduction.<br>Dataset also contains raw DFT data for calculations presented in the research work, specifically on hydrogen activation and pincer ligand acidity topics.
DOI: 10.6084/m9.figshare.27332172.v1
title: Chapter Defluviitoga

description: Defluviitoga supplmentary files for chapter Defluviitoga for the Bergey's manual<br>
DOI: 10.6084/m9.figshare.28704983.v1
title: Supplementary Material for: Referral to liver transplant: a national survey from Portugal

description: Objectives
The referral of patients with cirrhosis to liver transplant (LT) is a multi-stage complex process. There is lack of data on potential challenges to this process. We aimed to characterize challenges faced by Portuguese referring clinicians.

Methods
This was a cross-sectional survey from Curry Cabral Hospital, Lisbon, Portugal. The survey was open for 90 days, from August to November 2024. The survey included 13 questions: characterization of participants with 5 questions; and characterization of the process of referral to LT with 8 questions. 

Results
Overall, 56 clinicians responded to the survey (response rate of 46.7%). Their median (IQR) age was 38.1 (33.2-42.1) years. Their level of training was: specialist grade for 47 (83.9%) and fellow or intern grade for 9 (16.1%) individuals. The responders were from 21 different hospitals in Portugal, 8 (38.1%) provided tertiary care and 2 (9.5%) were LT centers. Among responders, there was heterogeneity regarding the following topics: referring criteria to LT; liver-related prognostic scores; contact channels with the LT center; tests and visits part of the LT workup. Many of them suggested the following improvements: to develop national or regional referral criteria; to expedite communication with the LT team; to accelerate access to the tests or visits part of the LT workup; and to shorten the time to the first appointment with the LT team.

Conclusions
Portuguese clinicians identified several challenges and improvements to the referral of patients with cirrhosis to LT. These findings may inform future strategies to streamline the referral to LT.
DOI: 10.6084/m9.figshare.21211355.v1
title: A New Uncertain Remanufacturing Scheduling Model with Rework Risk Using Hybrid Optimization Algorithm

description: As a resource-conserving and environmental-friendly manufacturing paradigm, remanufacturing with the potential to realize sustainability in production has been extensively investigated. Scheduling plays a significant role in achieving the remanufacturing benefits. However, the remanufacturing process involves intricate uncertainties because it takes end-of-life products with different qualities as workblanks, which increases the risk of rework and complicates remanufacturing scheduling. Though the traditional stochastic optimization methods or fuzzy theory have been employed to address uncertainties in the remanufacturing scheduling problem, they are constrained with the limited historical data which renders it difficult to describe uncertainties accurately and intuitively. Therefore, a new uncertain remanufacturing scheduling model with rework risk is proposed, in which, the interval grey numbers are applied to describe the uncertainty clearly and consider the rework risk in remanufacturing process. To solve this model, a hybrid optimization algorithm that combines differential evolution and particle swarm optimization algorithms through an efficient representation scheme is proposed. Besides, this algorithm integrates multiple improvements to maintain the diversity of the population and enhance its performance. Simulation experiments are given, demonstrating that the proposed algorithm provides a better optimal solution than other baseline algorithms for solving the remanufacturing scheduling problem.
DOI: 10.6084/m9.figshare.24052236.v2
title: Comprehensive Data on the Prevalence of Psychiatric Symptoms in UK University Students: Data Files SPSS and XLSX Format and Variable Codes

description: Dataset accompanying the data descriptor for publication in Scientific Data entitled: Data on the prevalence of psychiatric symptoms in UK university students. More specifically, the current data provides crucial information concerning the prevalence of anxiety, depression, mania, insomnia, stress, suicidal ideation, psychotic experiences and loneliness amongst a sample of N=1408 UK university students. A cross-sectional online questionnaire-based study was implemented. Online recruitment for this dataset began on September 17<sup>th</sup>, 2018, and ended on the 30<sup>th</sup> July 2019. Eight validated measures were used: Generalized Anxiety Disorder Scale; Patient Health Questionnaire; The Mood Disorder Questionnaire; The Sleep Condition Indicator; The Perceived Stress Scale; Suicidal Behaviours Questionnaire-Revised; The Prodromal Questionnaire 16 (PQ-16); and the University of California Loneliness Scale.
DOI: 10.6084/m9.figshare.28238576.v1
title: Enhancing student-centered walking environments on university campuses through street view imagery and machine learning

description: Campus walking environments significantly influence college students' daily lives and shape their subjective perceptions. However, previous studies have been constrained by limited sample sizes and inefficient, time-consuming methodologies. To address these limitations, we developed a deep learning framework to evaluate campus walking perceptions across four universities in China's Yangtze River Delta region. Utilizing 15,596 Baidu Street View Images (BSVIs) and perceptual ratings from 100 volunteers across four dimensions—aesthetics, security, depression, and vitality—we employed four machine learning models to predict perceptual scores. Our results demonstrate that the Random Forest (RF) model outperformed others in predicting aesthetics, security, and vitality, while linear regression was most effective for depression. Spatial analysis revealed that perceptions of aesthetics, security, and vitality were concentrated in landmark areas and regions with high pedestrian flow. Multiple linear regression analysis indicated that buildings exhibited stronger correlations with depression (β = 0.112) compared to other perceptual aspects. Conversely, vegetation (β = 0.032) and meadow (β = 0.176) elements significantly enhanced aesthetics. This study offers actionable insights for optimizing campus walking environments from a student-centered perspective, emphasizing the importance of spatial design and visual elements in enhancing students' perceptual experiences.
DOI: 10.6084/m9.figshare.c.3641477_d1.v1
title: Additional file 1: Table S1. of Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL

description: GO term enrichment performed on all 10 dpi time by time comparisons. For every time by time comparison the Enrichment Score for the significant DAVID clusters as well as a description of these clusters is presented for up-regulated and down-regulated lists of transcripts with an FDRâ
DOI: 10.6084/m9.figshare.14312687.v1
title: Speedtest Broadband Performance by NBN Technology Types

description: This dataset intersects Speedtest Global dataset (Q1 2020), reporting speed by location, with NBN Technology Dataset, reporting NBN technology by geospatial layers.<br>Speedtest data is CC-BY-NC-SA, so this derived dataset is too.A network graph of variables is available at Kumu.<br>A sample of the data is visible in csv - first ten lines of geojson.<br>*** Versionsv2 - Add geojson with Lat Longs.v1 - initial load.<br><br>**VariablesSpeedtest records at 600M^2 locations (geometry):- speedtests (up and down)- count of devices- count of tests<br>This dataset (as geojson) contains:87,058 rows by 25 fields.- LocID - speedtest Quadkey - 12 digit code (0-3)- Geometry, contains Lat/Lon description of 600m2 area- Speedtest variables (5)- % LocID by NBN tech - FTTP (0 - 1.0; per cent)- % LocID by NBN tech - FTTC (0 - 1.0; per cent)<br>- % LocID by NBN tech - FTTB (0 - 1.0; per cent)<br>- % LocID by NBN tech - FTTN (0 - 1.0; per cent)<br>- % LocID by NBN tech - HFC (0 - 1.0; per cent)<br>- % LocID by NBN tech - FW - fixed wireless (0 - 1.0; per cent)<br>- % LocID by NBN tech - Satellite (0 - 1.0; per cent)- Population Density (per ABS SA2) data - link to add- Geometry; decimal degrees - coordinate system WGS 1984 Aust Centre for Remote Sensing Lambert (a second file contains Lat Longs).<br><br>** Dataset challengesThe NBN dataset contains:- vacant areas - 2000 LocIDs with less than 100%- overlapping areas. - 200 LocID with greater than 100%Hence this data sum of Tech % do not sum always to 100%<br><br>Info on Quadkey: https://towardsdatascience.com/geospatial-indexing-with-quadkeys-d933dff01496<br>** ToDo:- add files listing Quadkeys with non-100% NBN Tech Coverage (csv)<br>** Future Work:- Create tool to select LocID by Tech threshold eg 75%, 85%, 95%, then collate those LocIDs for an average speed by NBN Tech.- Display LocIDs by location on a map, where above Tech Threshold- Display LocIDs where below threshold (ie overlapping Techs)- Display significant Satellite and FW LocIDs- Display slow techs; speed less than 20Mbps- Display super-slow techs; speed less than 1Mbps- Display fast tech; speed greater than 80Mbps- Display superfast tech; speed greater than 200Mbps<br>Related datasets include:- Speedtest data analysis Australia; Figshare 13370504- Comparing four cities Broadband; Figshare 13621169- Speedtest vs NBN technology maps - one record for each technology in a LocID (319, 337 rows * 25 cols) - created by AURIN - Figshare 14006138
DOI: 10.6084/m9.figshare.22663939.v3
title: Trait space and compactness: A new perspective on explaining variations in primary productivity

description: The dataset include the data of trait space, compactness, productivity from different source (modis-based GPP,  GPP based on a vegetation photosynthesis model,  enhanced vegetation index,  sun-induced chlorophyll fluorescence), and productivity stability in  64 naturally assembled communities (including forests, grasslands, and deserts) in China. Specially, trait space was calculated with nine leaf traits, including leaf area (LA), leaf thickness (LT), specific leaf area (SLA), leaf nitrogen concentration (LN), leaf phosphorus concentration (LP), leaf water content (LWC), stomatal area (SA), stomatal density (SD), and maximum stomatal conductance (gmax).