cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.yykqqr
title: Occurrence Download

description: A dataset containing 1089 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Selenipedium Rchb.f., Paphiopedilum Pfitzer, Mexipedium V.A.Albert & M.W.Chase, Phragmipedium Rolfe)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1089 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0168718-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nyvtah
title: Occurrence Download

description: A dataset containing 8922 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Spinus tristis (Linnaeus, 1758)",
 "Year 2011-2018"
 ]
}

 The dataset includes 8922 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244078-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dci5ds
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nectarinia lotenia (Linnaeus, 1766)"
 ]
}

 The dataset includes 157 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001262-180920211646547/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rkl6br
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Prestonia erecta (Malme) J.F.Morales",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 136 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007682-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7ptqa
title: Occurrence Download

description: A dataset containing 3384 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Azotobacter Beijerinck, 1901",
 "Year 1921-2021"
 ]
}

 The dataset includes 3384 records from 214 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005924-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqzi4h
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stryphnodendron pumilum Glaz."
 ]
}

 The dataset includes 145 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009920-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j828qz
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "TaxonKey is Cyanthillium cinereum (L.) H.Rob."
 ]
}

 The dataset includes 34 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0266068-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e0ot3n
title: Occurrence Download

description: A dataset containing 229 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lonicera heterophylla Decne."
 ]
}

 The dataset includes 229 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001262-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qfzkhp
title: Occurrence Download

description: A dataset containing 18488 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zapornia parva (Scopoli, 1769)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 18488 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052227-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mry98d
title: Occurrence Download

description: A dataset containing 1077 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((5.125 51.325,5.175 51.325,5.175 51.375,5.125 51.375,5.125 51.325))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 1077 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305836-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6z6jrj
title: Occurrence Download

description: A dataset containing 2886 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Malva verticillata L."
 ]
}

 The dataset includes 2886 records from 221 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0268296-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxsskh
title: Occurrence Download

description: A dataset containing 8937 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ipomoea cairica (L.) Sweet"
 ]
}

 The dataset includes 8937 records from 272 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051830-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0gamky
title: Occurrence Download

description: A dataset containing 163 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crotalus polystictus (Cope, 1865)",
 "Country is Mexico"
 ]
}

 The dataset includes 163 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001263-150721130643939/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n8e828
title: Occurrence Download

description: A dataset containing 45524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 2010-2021"
 ]
}

 The dataset includes 45524 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0318333-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a0ygy4
title: Occurrence Download

description: A dataset containing 11212 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sceloporus variabilis Wiegmann, 1834"
 ]
}

 The dataset includes 11212 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001264-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17608/k6.auckland.16551684
title: Hadden King penguin 3

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.17608/k6.auckland.16551684.v1
title: Hadden King penguin 3

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.17608/k6.auckland.16551687
title: Hadden King penguin 4

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.17608/k6.auckland.16551687.v1
title: Hadden King penguin 4

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.17608/k6.auckland.16551690
title: Hadden Little penguin 1

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.17608/k6.auckland.16551690.v1
title: Hadden Little penguin 1

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.17608/k6.auckland.16551693
title: Hadden Little penguin 2

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.17608/k6.auckland.16551693.v1
title: Hadden Little penguin 2

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.17608/k6.auckland.16551696
title: Hadden Little penguin 3

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.17608/k6.auckland.16551696.v1
title: Hadden Little penguin 3

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.17608/k6.auckland.16551699
title: Hadden Little penguin iris

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.25345/c5vt1h14h
title: MassIVE MSV000094097 - GNPS - Osteoarthritis diet study
title: Untargeted LC-MS/MS data for plasma, serum, fecal, and saliva samples from patients with osteoarthritis before and after diet intervention.
DOI: 10.6084/m9.figshare.10260356
title: Local penetration of doxorubicin via intrahepatic implantation of PLGA based doxorubicin-loaded implants

description: Doxorubicin (DOX) is widely used in the chemotherapy of a wide range of cancers. However, intravenous administration of DOX causes toxicity to most major organs which limits its clinical application. DOX-loaded drug delivery system could provide a continuous sustained-release of drugs and enables high drug concentrations at the target site, while reducing systemic toxicity. Additionally, local chemotherapy with DOX may be a promising approach for lowering post-surgical recurrence of cancer. In this study, the sustained-release DOX-loaded implants were prepared by melt-molding method. The implants were characterized with regards to drug content uniformity, micromorphology and drug release profiles. Furthermore, differential scanning calorimetry (DSC) and Fourier transform infrared spectroscopy (FTIR) analyses were carried out to investigate the drug-excipient compatibility. To determine the local penetration of DOX in liver, the minipigs received intrahepatic implantation of DOX-loaded implants by abdominal surgery. UPLC-MS/MS method was used to detect the concentration of DOX in liver tissues. Our results suggested that DOX-loaded implants delivered high doses of drug at the implantation site for a prolonged period and provided valuable information for the future clinical applications of the DOX-loaded implants.
DOI: 10.6084/m9.figshare.10260356.v1
title: Local penetration of doxorubicin via intrahepatic implantation of PLGA based doxorubicin-loaded implants

description: Doxorubicin (DOX) is widely used in the chemotherapy of a wide range of cancers. However, intravenous administration of DOX causes toxicity to most major organs which limits its clinical application. DOX-loaded drug delivery system could provide a continuous sustained-release of drugs and enables high drug concentrations at the target site, while reducing systemic toxicity. Additionally, local chemotherapy with DOX may be a promising approach for lowering post-surgical recurrence of cancer. In this study, the sustained-release DOX-loaded implants were prepared by melt-molding method. The implants were characterized with regards to drug content uniformity, micromorphology and drug release profiles. Furthermore, differential scanning calorimetry (DSC) and Fourier transform infrared spectroscopy (FTIR) analyses were carried out to investigate the drug-excipient compatibility. To determine the local penetration of DOX in liver, the minipigs received intrahepatic implantation of DOX-loaded implants by abdominal surgery. UPLC-MS/MS method was used to detect the concentration of DOX in liver tissues. Our results suggested that DOX-loaded implants delivered high doses of drug at the implantation site for a prolonged period and provided valuable information for the future clinical applications of the DOX-loaded implants.
DOI: 10.6084/m9.figshare.10260365
title: mNGS in clinical microbiology laboratories: on the road to maturity

description: Metagenomic next-generation sequencing (mNGS) is increasingly being applied in clinical laboratories for unbiased culture-independent diagnosis. Whether it can be a next routine pathogen identification tool has become a topic of concern. We review the current implementation of this new technology for infectious disease diagnostics and discuss the feasibility of transforming mNGS into a routine diagnostic test. Since 2008, numerous studies from over 20 countries have revealed the practicality of mNGS in the work-up of undiagnosed infectious diseases. mNGS performs well in identifying rare, novel, difficult-to-detect and coinfected pathogens directly from clinical samples and presents great potential in resistance prediction by sequencing the antibiotic resistance genes, providing new diagnostic evidence that can be used to guide treatment options and improve antibiotic stewardship. Many physicians recognized mNGS as a last resort method to address clinical infection problems. Although several hurdles, such as workflow validation, quality control, method standardisation, and data interpretation, remain before mNGS can be implemented routinely in clinical laboratories, they are temporary and can be overcome by rapidly evolving technologies. With more validated workflows, lower cost and turnaround time, and simplified interpretation criteria, mNGS will be widely accepted in clinical practice. Overall, mNGS is transforming the landscape of clinical microbiology laboratories, and to ensure that it is properly utilised in clinical diagnosis, both physicians and microbiologists should have a thorough understanding of the power and limitations of this method.
DOI: 10.6084/m9.figshare.10260365.v1
title: mNGS in clinical microbiology laboratories: on the road to maturity

description: Metagenomic next-generation sequencing (mNGS) is increasingly being applied in clinical laboratories for unbiased culture-independent diagnosis. Whether it can be a next routine pathogen identification tool has become a topic of concern. We review the current implementation of this new technology for infectious disease diagnostics and discuss the feasibility of transforming mNGS into a routine diagnostic test. Since 2008, numerous studies from over 20 countries have revealed the practicality of mNGS in the work-up of undiagnosed infectious diseases. mNGS performs well in identifying rare, novel, difficult-to-detect and coinfected pathogens directly from clinical samples and presents great potential in resistance prediction by sequencing the antibiotic resistance genes, providing new diagnostic evidence that can be used to guide treatment options and improve antibiotic stewardship. Many physicians recognized mNGS as a last resort method to address clinical infection problems. Although several hurdles, such as workflow validation, quality control, method standardisation, and data interpretation, remain before mNGS can be implemented routinely in clinical laboratories, they are temporary and can be overcome by rapidly evolving technologies. With more validated workflows, lower cost and turnaround time, and simplified interpretation criteria, mNGS will be widely accepted in clinical practice. Overall, mNGS is transforming the landscape of clinical microbiology laboratories, and to ensure that it is properly utilised in clinical diagnosis, both physicians and microbiologists should have a thorough understanding of the power and limitations of this method.
DOI: 10.6084/m9.figshare.6590387.v2
title: Impacts of permafrost on above- and belowground biomass on the northern Qinghai-Tibetan Plateau

description: Because permafrost is extremely sensitive to climate change, it is of great importance to understand the relationship between permafrost and vegetation biomass. This study aims to reveal the impacts of permafrost on above- and belowground vegetation biomass on the northern Qinghai-Tibetan Plateau. Soil temperature, moisture, active-layer thickness, vegetation coverage, aboveground biomass (AGB), belowground biomass (BGB), and soil organic carbon were investigated in the growing seasons during 2014–2016. The average AGB and BGB in the growing seasons were 0.036 and 0.83 g cm<sup>−2</sup>, respectively. The AGB was significantly positively correlated with BGB, soil moisture, and soil organic carbon content, but was significantly negatively correlated with mean annual ground temperature and active-layer thickness, suggesting that permafrost degradation can potentially decrease vegetation growth. The BGB was positively correlated with active-layer thickness and was negatively correlated with soil moisture. This study suggests that permafrost degradation can decrease the soil moisture on the northern Qinghai-Tibetan Plateau and thus decrease AGB. The decreased soil moisture can also lead to lower BGB, while the vegetation in drier soils tends to have higher BGB to access more water resources for plant growth.
DOI: 10.6084/m9.figshare.14978567
title: Additional file 1 of Exosome-transported circRNA_0001236 enhances chondrogenesis and suppress cartilage degradation via the miR-3677-3p/Sox9 axis

description: Additional file 1: Table S1. circRNA expression profiles in exosomes before and after chondrogenic differentiation of MSCs. The expression profiles of circRNAs in exosomes before and after chondrogenic differentiation were detected using a circRNA microarray. SAM statistical software was used to identify differentially expressed circRNAs between undifferentiated MSC-Exos and chondro-differentiated MSC-Exos. Among the circRNAs that were consistently differentially expressed in all three paired samples, 12 were upregulated (fold change ≥ 2) in chondro-differentiated MSC-Exos compared to their expression levels in undifferentiated MSC-Exos.