cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15315543
title: Analyzing the Effectiveness of Generative AI in Providing Learning Support

description: [Update note:] This version includes minor corrections to the previous release published on April 25, 2025.

This archive contains the full dataset used in the evaluation of generative AI tools across text, image, and video modalities, along with supporting literature references and the evaluation rubric. All data are structured for reproducibility and transparency.
DOI: 10.6084/m9.figshare.22946267.v3
title: A survey the plant association patterns in the central drylands of California, USA

description: A survey of plant-plant association patterns under shrubs and in the open in drylands.
DOI: 10.6084/m9.figshare.12340487.v2
title: Economic and Political Determinants of Terrorism in Selected European Countries

description: The data set contains socio-economic indicator variables' time series and terrorist attacks numbers time series for selected 16 countries. The raw data was collected from databases World Bank Open Data, Polity IV Project, Comparative Political Data Set, ILO, and Global Terrorism Database of the University of Maryland. The data was pre-processed for the needs of the research that was carried out on them.<br>
DOI: 10.6084/m9.figshare.28230212.v1
title: Raw NMR metabolic profiling data

description: Pancreatic cancer is the most lethal of all human cancers. The disease has no obvious symptoms in its early stages and in the majority of cases the cancer goes undetected until it has advanced to the point that surgery is no longer a viable option or until it has metastasized to other organs. The lack of sensitive biomarkers for early detection of pancreatic cancer contributes to the poor ability to detect the disease before it progresses to an untreatable stage. Here, an orthotopic xenograft mouse model of pancreatic cancer was investigated to determine if urinary metabolic biomarkers could be identified and used to detect early formation of pancreatic tumors. The orthotopic xenograft mouse model of pancreatic cancer was established by injecting human MiaPaCa-2 cells, derived from a male patient aged 65 years with pancreatic adenocarcinoma, into the pancreata of severe combined immunodeficient mice. Orthotopic pancreatic tumors, allowed to grow for eight weeks, were successfully established in the pancreata in 15 out of 20 mice. At the time of sacrifice, tumors were excised and histologically analyzed and the masses and volumes recorded. Urine samples were collected prior to injection, at one-week post injection, and every two weeks afterwards for eight weeks. NMR based metabolic profiling of the urine samples indicated that 25 metabolites changed significantly over the course of tumor initiation and growth. Longitudinal metabolic profiling analysis indicated an initial increase in activity of metabolic pathways involved in energy production and/or cell synthesis by cancer cells as required to support tumor growth that was followed by a diminished difference between control and orthotopic mice associated with tumor senescence as the tumors reached 7-8 weeks post injection. The results indicate that urinary metabolic profiling may be able to detect the earliest stages of pancreatic tumor initiation and growth, providing motivation for further investigation in human studies.<br>All binned raw and normalized NMR spectra used for the study are included
DOI: 10.6084/m9.figshare.19742044.v1
title: consensus_phylogeny

description: Consensus phylogeny used in detection-occupancy model
DOI: 10.6084/m9.figshare.23535363.v1
title: MITOS2 annotation results

description: Results of annotation of amblyceran mitochondrial chromosomes in MITOS2.
DOI: 10.6084/m9.figshare.25583262.v1
title: Pollination deficits and their relation with insect pollinator visitation are cultivar-dependent in an entomophilous crop

description: Insects contribute considerably to global crop pollination, with pollination deficits being documented for multiple entomophilous or pollinator-dependent crops. Different cultivars of crops are being cultivated within and across production regions, so it is essential to understand the cultivar variability of pollination deficits. Here, we used a dataset from 286 sites from multiple production regions to develop a synthesis on pollination deficits in two widely cultivated highbush blueberry cultivars, ‘Bluecrop’ and ‘Duke’. Additionally, we determined if bee visitation or bee richness reduces pollination deficits in these cultivars. On average, neither cultivar showed pollination deficits regarding fruit set. However, for ‘Bluecrop’ we found pollination deficits for berry weight and seed set, which was not the case for ‘Duke’. Increasing total bee visitation reduced pollination deficits of both berry weight and seed set for ‘Bluecrop’. More specifically, a non-linear, negative exponential model best predicted this relation between bee visitation and pollination deficits. Our results highlight that pollination deficits and responses to pollinator visitation are variable between different cultivars of a single crop, which suggests opportunities to use certain cultivars that are less dependent on insect-mediated pollination in landscapes and regions where pollination services have been compromised. In addition, the non-linear response between bee visitation and pollination deficits suggests that optimal bee visitation rates need to be determined to improve pollination management and crop yield and to support accurate economic valuations of pollination services.
DOI: 10.6084/m9.figshare.27237852.v1
title: 饮料摄入与子宫内膜息肉有关

description: Endometrial polyps (EPs) are a common gynecological disorder consisting of endometrial glands and fibrotic endometrial stroma containing thick-walled blood vessels. They are most commonly found in the back wall of the uterus, at the base of the uterus, or at the uterotubal junction. Epidemiological surveys have shown that the incidence of EP ranges from 7.8% to 50%.
DOI: 10.6084/m9.figshare.11687868.v4
title: Cerebral activity during peak emotion in response to music revealed by High-Density EEG.

description: This data set is related to the recording of HD-EEG data during the musical listening of chills-inducing music. All participants (n=18) continuously reported their emotional state according to 3 levels of emotion; (1) Low pleasure, (2) High Pleasure, (3) Chills. This data set provide folders (format .mff) containing data acquired during the experiment for each participant from S1 to S18. <br>
DOI: 10.6084/m9.figshare.3180211.v1
title: The history of Toll like receptors

description: This figure is remade using this reference http://www.nature.com/nri/journal/v13/n6/full/nri3446.html.
DOI: 10.25403/upresearchdata.25242886.v1
title: Project seeking to improve Tuberculosis (TB) diagnostic services at primary healthcare clinics in high Tuberculosis (TB) burden settings

description: The data set contains various types of data from different objectives of the project including maps that show the geographic accessibility of TB diagnostic services at primary healthcare clinics, the raw data used to conduct an interrupted times series analysis that determined the impact of COVID-19 on TB diagnostic services, data used to determine the quality of TB diagnostic services at primary healthcare clinics assessed through an audit and the results from a nominal group technique that sought to find a means of improving TB diagnostic services for COVID-19 and related health emergencies.
DOI: 10.6084/m9.figshare.28330934.v2
title: HRV ageing

description: HRV ageing horse - exercirse exercise 1 (#1-8)exercise 2 (#1-8)exercise 3 (#1-8)
DOI: 10.6084/m9.figshare.11619270.v1
title: Supplementary Material for: Muir-Torre Syndrome Associated Periocular Sebaceous Neoplasms: Screening Patterns in the Literature and in Clinical Practice

description: <b><i>Background:</i></b> Muir-Torre syndrome (MTS) is defined clinically as the association of cutaneous sebaceous neoplasm and visceral malignancy. Ancillary tests are considered crucial for diagnosis. Although screening guidelines for MTS, including the Mayo MTS scoring system, have been proposed, there are no ophthalmic site-specific guidelines. <b><i>Summary:</i></b> A literature review conducted by PubMed search for articles describing patients with periocular sebaceous neoplasm and MTS disclosed 31 publications describing 60 patients, 36 (60%) of whom fulfilled clinical criteria for MTS, 6 (10%) whose diagnosis was based on screening ancillary studies, 14 (23%) who fulfilled clinical criteria and had supporting screening ancillary studies, and 4 (7%) who fulfilled clinical criteria and had supporting diagnostic genetic testing. Most patients were male (34 vs. 15 females), with a median age of 59 years (range 37–79 years). The most common diagnosis was sebaceous carcinoma (40/60, 67%), followed by sebaceous adenoma (16/60, 27%), followed by other tumors with sebaceous differentiation (4/60, 6%). The periocular lesions were identified prior to visceral malignancy in 10 out of 45 (22%) cases, after visceral malignancy in 34 out of 45 (76%) cases, and concurrently with visceral malignancy in 1 out of 45 (2%) cases. Immunohistochemistry for mismatch repair proteins was performed in 41 out of 60 (68%) and 14 out of 38 (37%) of the tumors had lost MSH2. Based on Mayo-MTS scores of 2 or greater, and after removing visceral malignancies not included in their scoring algorithm, 26 out of 30 of patients (87%) with complete data were considered to be appropriate candidates for further work-up. A survey of current practice was conducted by questionnaires, distributed to ophthalmic pathologists, ocular oncologists, and oculoplastic surgeons from national and international professional societies. Of the 103 physicians who participated in the survey, 91 (88%) felt that MTS evaluation guidelines were not sufficiently clear. <b><i>Key Messages:</i></b> Our findings suggest that Mayo MTS screening guidelines may be applicable to periocular sebaceous neoplasms. The uncertainty of ophthalmic specialists about optimal screening guidelines for MTS reflects the heterogeneity of defining criteria for MTS and limited molecular genetic data. Larger studies with detailed clinical, histopathologic, and molecular genetic data are required to formally assess screening guidelines for MTS in patients with periocular sebaceous neoplasms.
DOI: 10.6084/m9.figshare.16871806.v1
title: Expanded data for article “Analysis of Current Trends in Migration Processes”.pdf

description: Expanded data for article “<i>Analysis of Current Trends in Migration Processes</i>”. Compiled by the authors based on the data of the Federal State Statistics Service of the Russian Federation
DOI: 10.6084/m9.figshare.22133852.v1
title: Supplementary Material for: Learning Curve for Endoscopic Combined Intra-Renal Surgery Using Vacuum-Assisted Device

description: <b><i>Introduction:</i></b> The aim of the study was to provide data related to endoscopic combined intra-renal surgery learning curve using minimally invasive techniques with vacuum-assisted devices. Minimal data exist on the learning curve for these techniques. <b><i>Methods:</i></b> We conducted a prospective study monitoring the training of a mentored surgeon learning ECIRS with vacuum assistance. We use varied parameters for improvements. After collection of peri-operative data, tendency lines and CUSUM analysis were used to investigate the learning curves. <b><i>Results:</i></b> 111 patients have been included. Guy’s Stone Score 3 and 4 stones 51.3% of all cases. The mostly used percutaneous sheath was 16 Fr (87.3%). SFR was 78.4%. 52.3% patients were tubeless, and 38.7% achieved trifecta. High-degree complication rate was 3.6%. Operative time improved after 72 cases. We observed a decrease of complications throughout the case series, with improvement after 17 cases. In terms of trifecta, proficiency was reached after 53 cases. Proficiency seems achievable in a limited number of procedures, but results did not plateau. Higher number of cases might be necessary for excellence. <b><i>Discussion:</i></b> A surgeon learning ECIRS with vacuum assistance can obtain proficiency in 17–50 cases. The number of procedures required for excellence remains unclear. Exclusion of more complex cases might positively affect the training, reducing unnecessary complications.
DOI: 10.6084/m9.figshare.27677967.v3
title: raw data：IscR-tmRNA Regulatory Axis Plays a Key Role in Multiple Stress Response and Pathogenicity in Aeromonas veronii

description: this raw data is used for illustration of IscR-tmRNA Regulatory Axis Plays a Key Role in Multiple Stress Response and Pathogenicity in Aeromonas veronii
DOI: 10.6084/m9.figshare.14959449.v4
title: Dlx1_2021-02-12_12-46-54

description: Electrophysiology recordings<br>
DOI: 10.6084/m9.figshare.21757091.v1
title: Supplementary Material for: Association of Torquetenovirus viremia with physical frailty and cognitive impairment in three independent European cohorts

description: Introduction: Immunosenescence and inflammaging have been implicated in the pathophysiology of frailty. Torquetenovirus (TTV), a single-stranded DNA anellovirus, the major component of the human blood virome, shows an increased replication rate with advancing age. An elevated TTV viremia has been associated with an impaired immune function and an increased risk of mortality in the older population. The objective of this study was to analyze the relation between TTV viremia, physical frailty and cognitive impairment Methods: TTV viremia was measured in 1131 nonfrail, 45 physically frail, and 113 cognitively impaired older adults recruited in the MARK-AGE study (overall mean age 64.7±5.9 years), then the results were checked in two other independent cohorts from Spain and Portugal, including 126 frail, 252 prefrail and 141 nonfrail individuals (overall mean age: 77.5±8.3 years). Results: TTV viremia ≥4log was associated with physical frailty (OR: 4.69; 95% CI: 2.06-10.67, p&lt;0.0001) and cognitive impairment (OR: 3.49, 95% CI : 2.14-5.69, p&lt;0.0001) in the MARK-AGE population. The association between TTV DNA load and frailty status was confirmed in the Spanish cohort, while a slight association with cognitive impairment was observed (OR: 1.33; 95% CI: 1.000-1.773), only in the unadjusted model. No association between TTV load and frailty or cognitive impairment was found in the Portuguese sample, although a negative association between TTV viremia and MMSE score was observed in Spanish and Portuguese females. Conclusions: These findings demonstrate an association between TTV viremia and physical frailty, while the association with cognitive impairment was observed only in the younger population from the MARK-AGE study. Further research is necessary to clarify TTV's clinical relevance in the onset and progression of frailty and cognitive decline in older individuals.
DOI: 10.6084/m9.figshare.22265824.v1
title: Felis casus CD134 pdb

description: Data Set 2, pdb file of Felis catus CD134 receptor. This file was obtained through AlphaFold, and was later used in Chimera for structural analysis of Felis catus' CD134 versus the CD134 receptor of lions, leopard, and lynx.
DOI: 10.6084/m9.figshare.26808217.v2
title: Supplementary Material for: Development and validation of a machine learning-based prognostic model for IgA nephropathy with CKD stage 3 or 4

description: Introduction: Immunoglobulin A nephropathy (IgAN) patients with lower estimated glomerular filtration rate (eGFR) and higher proteinuria are at a higher risk for end-stage kidney disease (ESKD) and their prognosis is still unclear. We aim to develop and validate prognostic models in IgAN patients with CKD stage 3 or 4 and proteinuria≥1.0 g/d.
Methods: Patients who came from Xijing Hospital, spanning December 2008 to January 2020 were divided into training and test cohorts randomly, with a ratio of 7:3, achieving ESKD and death as study endpoints. Created prediction models for IgAN patients based on 66 clinical and pathological characteristics using the random survival forests (RSF), survival support vector machine (SSVM), eXtreme Gradient Boosting (XGboost), and Cox regression models. The concordance index (C-index), integrated Brier scores (IBS), net reclassification index (NRI), and integrated discrimination improvement (IDI) were used to evaluate discrimination, calibration, and risk classification respectively.
Results: A total of 263 patients were enrolled. The median follow-up time was 57.3 months, with 124 (47.1%) patients experiencing combined events. Age, blood urea nitrogen, serum uric acid, serum potassium, glomeruli sclerosis ratio, hemoglobin, and tubular atrophy/interstitial fibrosis were identified as risk factors. The RSF model predicted the prognosis with a C-index of 0.871 (0.842, 0.900) in training cohort and 0.810 (0.732, 0.888) in test cohort, which was higher than the models built by SSVM model (0.794 (0.753, 0.835) and 0.805 (0.731, 0.879) respectively), XGboost model (0.840 (0.797, 0.883) and 0.799 (0.723, 0.875) respectively) and Cox regression (0.776 (0.727, 0.825) and 0.793 (0.713, 0.873) respectively). NRI and IDI showed that the RSF model exhibited superior performance than the Cox model.
Conclusion: Our model introduced seven risk factors that may be useful in predicting the progression of IgAN patients with CKD stage 3 or 4 and proteinuria ≥1.0g/d. The RSF model is applicable for identifying the progression of IgAN and has outperformed than SSVM, XGboost, and Cox models.
DOI: 10.6084/m9.figshare.28692116.v1
title: CD, solution NMR, Chemical Probing and EMSA raw data: core and extended ROQ with ADE RNA wt and derivatives

description: Local RNA structure is decisive for specific engagement with gene-regulatory proteins and, as a consequence, correct cellular function. However, its structure is often dynamic and, thus, challenging to study. Here, we show NMR and single-molecule force spectroscopy efficiently complement each other to provide high-resolution, time-resolved data on RNA folding intermediates during dynamic complex formation with the immune-regulating protein Roquin, which exploits multiple RNA-binding sites. Our data reveal a dual-mode binding of Roquin to RNA by firmly attaching to the stem-loop and, at the same time, destabilizing other regions, making them accessible to downstream interaction partners.The Excel dataset contains CD melting curve raw data for ADE RNA and bound Roquin proteins. The NMR zip folder contains raw and relevant processed data for core and ext ROQ with ADE RNA derivaties, ADE temperature series, ADE halves' NMR data, ADE mirrored data, and HNNCOSY data for ADE alone and with coreROQ. The EMSAs excel files contains all quantified and normalized bands for titrations, utilizable for fitting. The chemical probing data contain greyscale values for the ADR RNA alone and together with core and ext ROQ domains, as well as the alkalic ladder.All datasets are for: Tants, Walbrun et al., <i>Roquin exhibits opposing effects on RNA stem-loop stability through its two ROQ domain binding sites.</i> PNAS, 2025.See also related dataset specifically for SMFS data (optical tweezers) from this study: https://doi.org/10.6084/m9.figshare.28690193.v1
DOI: 10.6084/m9.figshare.19367174.v1
title: the raw data

description: the raw date of this papar.
DOI: 10.6084/m9.figshare.28647797.v1
title: Data For Quiet Quitting Literature Review

description: The phenomenon of Quiet Quitting (QQ)—employees disengaging by limiting efforts to minimum job requirements—has surged as a critical workplace challenge post-pandemic. This Systematic Literature Review (SLR) synthesizes 61 studies to map QQ’s drivers, mechanisms, and implications. Using bibliometric analysis, thematic clustering, and the AMO framework (Antecedents, Mediators/Moderators, Outcomes), the study identifies three interconnected dimensions: psychological (burnout, emotional exhaustion), organizational (toxic cultures, inadequate leadership), and individual (autonomy deficits, value misalignment). Theoretically, the study integrates Social Exchange Theory and Psychological Contract Theory, framing QQ as a systemic response to organizational failures rather than individual apathy. Practical implications urge HRM to prioritize human-centric practices, including equitable recognition, career development, and transparent communication. Policymakers must advocate for ethical labor standards and regulate intrusive workplace technologies. Limitations include reliance on peer-reviewed journals and the AMO framework’s scope. Future research should explore cross-cultural dynamics, technology’s dual role in engagement, and longitudinal impacts. This paper provides a roadmap for transforming disengagement into collaboration, advocating workplaces that balance productivity with empathy in evolving work landscapes.
DOI: 10.6084/m9.figshare.12488519.v1
title: OPTED-GEO-CIF.7z

description: Metal/Salen-COF structures
DOI: 10.6084/m9.figshare.7941455.v1
title: PEDAGOGICAL INTERVENTIONS OF THE TEACHER IN RELATION TO PERCEIVED CONFLICTS AMONG THE STUDENTS DURING THE PHYSICAL EDUCATION CLASSES

description: ABSTRACT The objective of the research was to understand the teacher perception about the relationship between conflict situations and pedagogical interventions in Physical Education (PE) classes. It is a descriptive, qualitative research that used semi-structured interviews, class diary and promoted joint reflection between three EF teachers from Elementary School II and High School and the researcher. The data of the research went through an analysis of content from predefined categories: conflict situations and actions implemented. Conflicts were classified according to Moore(1). Teachers, previously resistant to living with conflicts, began to exercise the role of mediators between the parties. These behaviors were caused by the change in the perception about how to deal with classroom conflicts, which altered their pedagogical practice by using new strategies, such as empathy based negotiation.
DOI: 10.6084/m9.figshare.6639191.v1
title: Network Analysis Data.zip

description: Initial coding from individual networks (photographed) into excel (see combined data entry). Nodes assigned weights based on position in network. Edges assigned ranks by participants. Networks imported to Gephi for visualisation of networks.