cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28930064.v1
title: Virome profile of wild rodents from Yili River Valley of Xinjiang, China

description: <b>Background: </b>Rodents serve as key natural reservoirs for a diverse array of zoonotic viruses. The Yili River Valley, one of the most biodiverse regions in Xinjiang, functions as a critical terrestrial corridor linking China with Central and Western Asia and Europe. While several studies have examined viral diversity in wild rodents across different regions of China, the virome of this ecologically significant area remains largely unexplored.<b>Results: </b>Using meta-transcriptomic sequencing and virome analysis, we characterized the viromes of wild rodents collected from the Yili River Valley from 2020 to 2023 and assessed viral distribution across different host species and tissues (liver, lung, spleen, intestine). A total of 19 vertebrate-associated viral families were identified, including those with high zoonotic potential and/or evolutionary significance, such as <i>Arteriviridae</i>, <i>Coronaviridae</i>, <i>Flaviviridae</i>, <i>Hantaviridae</i>, <i>Hepeviridae</i>, <i>Hepadnaviridae</i>, and <i>Picornaviridae</i>. Notably, over 80% of the detected viruses were putative novel species, highlighting the vast and largely unexplored viral diversity in rodents from this region. Viral composition varied significantly among host species, with <i>Microtus obscurus</i> identified as a major reservoir. Additionally, substantial differences in viral distribution were observed across tissue types. The high prevalence of zoonotic viruses, including hantaviruses and hepatitis E virus (HEV), along with the first identification of a PRRSV1-related arterivirus in rodents, underscores the potential risk of cross-species transmission to humans and domestic animals.<b>Conclusions: </b>This study enhances our understanding of virome composition of rodents in a biodiversity hotspot in Yili, Xinjiang, revealing a substantial yet largely uncharted viral diversity. These findings emphasize the need for continuous surveillance of viruses that may have potential risks of viral spillover to humans and domestic animals, including <i>Arteriviridae</i>, <i>Flaviviridae</i>, <i>Hantaviridae</i>, <i>Hepeviridae</i>, and <i>Hepadnaviridae</i>.
DOI: 10.6084/m9.figshare.29150558.v1
title: Graphical Abstract.png

description: Graphical Abstract
DOI: 10.17632/52h3d44n85
title: Ina-SASet: dataset for developing Indonesian sentiment lexicon for extracting consumer reference based on fine grained sentiment analysis technique

description: Consumer preference desribe how consumer defines the suitable product to be obtained for their necessity. Extracting consumer preference enable us to depict the acceptance of consumer toward a specific commercial product. In term of the potential consumer, revealing consumer preference would assist them to select the the product of interest as recommended by the previous consumer. Likewise, consumer preference is also important for companies to advance both the product design and the quality improvement lining with consumer interest. Mainly, consumer preference is determined based on pencil survey by interviewing respondents to respond distinct description of products along with their level of attribute. It accounts the construct that any product can be represented in terms of its feature or characteristics that has any different level could be taken. The technique is, however, considered to be consuming, human intensive and costly. The collection of this dataset is part of an attempt to model consumer preference automatically by using dataset from online platform by employing fine grained lexicon-based sentiment analysis method. Ina-SASet is, hence, an initial dataset for developing Indonesian sentiment lexicon for extracting consumer preference based on fine grained sentiment analysis technique. The dataset contains raw data (Tweets) and pre-processed data involving: tokenizing, stop word removal and stemming.
DOI: 10.6084/m9.figshare.16592999.v1
title: Supplementary Material for: Preimplantation Genetic Testing Prevented Intergenerational Transmission of X-Linked Alport Syndrome

description: <b><i>Background:</i></b> Alport syndrome (AS) is a hereditary renal basement membrane disease that can lead to end-stage renal disease in young adults. It can be diagnosed by genetic analysis, being mostly caused by mutations in <i>COL4A3</i>, <i>COL­4A4</i>, and <i>COL4A5</i>. To date, there is no radical cure for this disease. <b><i>Objectives:</i></b> The aim of this study was to avoid the transmission of AS within an affected family by selecting healthy embryos for uterine transfer. The embryos were identified by preimplantation genetic testing for monogenic disorders (PGT-M). <b><i>Methods:</i></b> We used next-generation sequencing (NGS) to identify mutations in the proband and his parents. The results of NGS were confirmed by Sanger sequencing. Targeted NGS combined with targeted single-nucleotide polymorphism haplotyping was used for the in vitro identification of <i>COL4A5</i> mutations in human embryos to prevent their intergenerational transmission. <b><i>Results:</i></b> The c.349_359delGGACCTCAAGG and c.360_361insTGC mutations in <i>COL4A5</i> were identified in a family affected by X-linked AS. Whole-genome sequencing by NGS with targeted haplotyping was performed on biopsied trophectoderm cells. A healthy baby was born after transfer of a single freeze-thawed blastocyst. <b><i>Conclusions:</i></b> The use of targeted NGS for identifying diagnostic markers combined with targeted haplotyping is an easy and efficient PGT-M method for preventing intergenerational transmission of AS.
DOI: 10.17632/2289cnrdtz
title: LAMMPS lb/fluid fix version 2: Improved hydrodynamic forces implemented into LAMMPS through a lattice-Boltzmann fluid

description: The first version of this code (Mackay et al., 2013) [10] implemented long-range hydrodynamic interactions into the open-source molecular dynamics package LAMMPS. This was done through the creation of a fix, lb/fluid which was subsequently included as a user-package in the main LAMMPS distribution. Here we substantially update this package by making improvements to its accuracy, adding significant new features, and by simplifying the use of the package. A new two-pass interpolation and spreading scheme is introduced which results in the improved accuracy and numerical stability. New features include new output options, several added computes, and mesh geometry option suitable for micro- and nano-fluidic device simulations. The original package could require fairly careful calibration to obtain accurate thermostating and accurate reproduction of properties related to the hydrodynamic size of objects such as colloids. This process has now been largely automated so that the default settings should suffice for most applications.
DOI: 10.17632/4rkwh26jzt
title: The Effects of Synbiotics on the Liver Steatosis, Inflammation, and Gut Microbiome of Non-alcoholic Fatty Liver Disease Patients- Randomized trial

description: Background: Non-alcoholic fatty liver disease (NAFLD) represents a spectrum of pathological conditions from simple fat accumulation to non-alcoholic steatohepatitis. The possible role of the intestinal microbiome on NAFLD development has recently been in focus. Our study aimed to examine the effects of synbiotic administration on the liver steatosis, lipid metabolism, inflammation, and stool microbiome composition. Materials and methods: A double-blind, placebo-controlled study was conducted involving 84 patients with NAFLD, defined by the following criteria - an elastometric attenuation coefficient (ATT) greater than 0.63 dB/cm/MHz with an alanine aminotransferase level above 40 U/L for men and 35 U/L for women. The patients were divided into an intervention group treated with a synbiotic with 64x109 CFU of Lactobacillus and Bifidobacterium and 6g of inulin and a control group treated with a placebo. Results: Using synbiotics for 12 weeks significantly decreased liver steatosis (ΔATT -0.006±0.023 vs -0.016±0.021 dB/cm/MHz, p=0.046). The group of patients treated with the synbiotic showed a statistically significant decrease in the level of high-sensitive C-reactive protein (hs-CRP) (Δhs-CRP 0 vs -0.7 mg/L, p≤0.001). Synbiotics significantly enriched the microbiome of patients in the intervention group with the genera Lactobacillus, Bifidobacterium, Faecalibacterium, and Streptococcus, by 81%, 55%, 51%, and 40%, respectively, with a reduction of Ruminococcus and Enterobacterium by 35% and 40%. Synbiotic treatment significantly shortened the gut transition time (ΔGTT -5h vs. -10h, p=0.031). Conclusion: Synbiotics could be an effective, safe, and affordable option that could be important in NAFLD treatment.
DOI: 10.17632/jykkntgcfm
title: Replication Files for Wildfire Smoke and Private Provision of Public Air Quality Monitoring

description: Replication Files for the article Wildfire Smoke and Private Provision of Public Air Quality Monitoring, forthcoming at the Journal of Environmental Economics and Management; authors Michael Coury, Andrea La Nauze, and Liam Falconer.
DOI: 10.17632/whvsfvxj7x
title:  INDIGENOUS PEOPLES RIGHTS ACT IN TAGUDIN,ILOCOS SUR

description:  INDIGENOUS PEOPLES’ RIGHTS ACT IN TAGUDIN, ILOCOS SUR
RICHARD PETER A. ANDAYA, Ph.D.
Associate Professor IV
Ilocos Sur Polytechnic State College, Tagudin
Campus, Tagudin, Ilocos Sur

PRESENTED AT THE: 3RD INTERNATIONAL CONFERENCE IN EDUCATION,ENGINEERING , RESEARCH, TECHNOLOGY, AND SOCIAL SCIENCES 9ICEERTS 2019)
Date Conducted	: MARCH 2-4,2019
Sponsoring Agency	:GLOBAL RESEARCHERS ASSOCIATION AND CONVERGENCE FOR EXCELLENCE (GRACE) INC.
PUBLISHED: Global Researchers Journal Volume 5; June 2019 pp107-112


ABSTRACT
This study was conducted to determine the Implementation of Indigenous People’s Rights Act of 1997 in Tagudin, Ilocos Sur. The following are the salient findings of the study: The local government unit officials have a “High” level of Administrative Capability. All the components namely Personnel Capability, Financial Capability and Leadership Capability obtained High level. As a whole, the implementation of the IPRA in Tagudin, Ilocos Sur along government Initiative is “High.” Based on the findings, the following conclusions were drawn.1) The local government officials have a high capability in implementing government initiative along
IPRA.2) The government initiatives along the IPRA are highly implemented. With the foregoing findings and conclusions, the researcher recommends the following: 1)The local government unit officials should; Help the Bagos preserve their cultural
practices and encourage other community residents to respect the Bagos through cultural studies and cultural revival.2)The local government unit officials should clearly explain to the Bagos the need and importance for them to be educated to be aware of their rights and privileges and to uplift their social and economic status.3)The Bagos should avail of every opportunity initiated by the
government as to be socially, politically and economically integrated.

Keywords: IPRA, Rights, Indigenous, Bagos and
Administrative Capability
DOI: 10.15468/dl.4j8kf6
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platytroctes Günther, 1878",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-1.9734 4.2478,-0.0352 5.0957,-0.0352 10.8496,-9.0352 10.8496,-9.0352 4.4397,-8.4168 4.1049,-7.389 3.8664,-5.7288 4.5489,-4.0108 4.7359,-1.9734 4.2478))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013062-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/c36ywkzrm9
title: Improving the annotation process in computational pathology: from manual to semi-automatic approaches in digital nephropathology

description: The development of reliable artificial intelligence (AI) algorithms in pathology depends on solid ground truth provided by meticulous annotation of whole slide images (WSI), a time-consuming and operator-dependent process. A benchmark of the available annotation tools is performed to standardize and streamline this process.
DOI: 10.17632/fshtbhffth
title: A dataset of sensory perception of chocolates, guacamoles, ice teas and crisps collected with consumers using six temporal methods.

description: This article describes a dataset providing temporal sensory perception data of four dark chocolates, four guacamoles, four crisps and four ice teas collected from 436 consumers divided in six groups. Each group of consumers described the products using a different sensory method among: Temporal Dominance of Sensations (TDS), Temporal Check-All-That-Apply (TCATA), Attack-Evolution-Finish (AEF) dominance, AEF applicability, Free-Comment Attack-Evolution-Finish (FC-AEF) dominance and FC-AEF applicability. Each consumer evaluated all the products: guacamoles and ice tea were evaluated in the lab in one session; chocolates and crisps were evaluated at home in two separate sessions. Within each product category, one sample has been replicated. The consumers started with product descriptions, then they gave a hedonic score, and after having tasted all the products related to a same category, they answered questions about products complexity and difficulty of the task. Consumer information included in the dataset is sex, age and frequency of consumption of each product category. This dataset is unique as it addresses several temporal methods applied on four product categories with different textures and levels of complexity. Thus, it could be very useful for the sensometric community to compare the different methods and their parameters: dominance vs. applicability, periods vs. continuous time, simultaneous vs. retrospective measures, list of terms vs. Free-Comment.
DOI: 10.17632/yf8z2263gy
title: AUTORECYCLER: PROTOTYPE BASED ON ARTIFICIAL VISION TO AUTOMATE THE MATERIAL CLASSIFICATION PROCESS (PLASTIC, GLASS, CARDBOARD AND METAL).

description: Environmental protection has gained greater importance over time due to the negative impact and irreversible consequences that have occurred worldwide and stem from pollution. One of the great challenges faced in different parts of the world is the inadequate management and classification of solid waste. In order to contribute to tackling this issue, this paper proposes an automated sorting system based on artificial vision which allows recognition and separation of recyclable materials (Plastic, Glass, Cardboard and Metal) through a webcam connected in real time to the Nvidia® Jetson Nano™ 2GB programming board, which has a convolutional neural network (CNN) trained for the proper classification of waste. The system had a 95% accuracy in separating plastic, 96% in glass and metal, and 94% in cardboard. With this in mind, we conclude it contributes to the recycling effort, which has an impact on the reduction of environmental pollution worldwide.
DOI: 10.6084/m9.figshare.1257784.v1
title: Meta-data of articles

description: Metadata of articles included in systematic review
DOI: 10.6084/m9.figshare.27370026.v1
title: Supplementary Data 1-6 for "Evolutionary Divergence of Drug-Binding Residues in Bacterial Ribosomes" are deposited as a single .zip file containing six folders corresponding to SI Data 1-6. The names are <b>self-explanatory</b>, and we encourage you to contact the authors if we can be further helpful in your research or business.Smart

description: These data accompany the corresponding manuscript on the evolutionary diversity of drug-binding residues in bacterial ribosomes.
DOI: 10.60893/figshare.jcp.26495671.v1
title: Combination of 3 supplemental materials

description: Includes the software (ipynb and read-only html) and figure data (fig_data.zip) detailed in the supplemental online material section of the manuscript.
DOI: 10.17632/zrjwzwz65t
title: Data for: Post-Marketing Safety Surveillance of Adalimumab, Secukinumab, and Infliximab in Hidradenitis Suppurativa: An Analysis of the FDA Adverse Events Reporting System (FAERS) Database

description: Supplementary Data for Post-Marketing Safety Surveillance of Adalimumab, Secukinumab, and Infliximab in Hidradenitis Suppurativa: An Analysis of the FDA Adverse Events Reporting System (FAERS) Database
DOI: 10.6084/m9.figshare.23849721.v1
title: 2.Parallel Analysis.xlsx

description: Results of parallel analysis conducted to estimate the number of factors
DOI: 10.6084/m9.figshare.930506.v1
title: photosynthesis-html

description: unigenes associated with photosynthesis
DOI: 10.17632/pxpsfvnhwv
title: hub genes for dengue: Supplementary files 1-4

description: Supplementary file 1-4 for the manuscript "Identification of hub genes for dengue by machine learning-based integration approaches and Mendelian randomization investigation".
DOI: 10.6084/m9.figshare.12640460.v1
title: RNA sequencing data set of dlPFC grey matter from schizophrenia patients and controls

description: RNA sequencing data set of the grey matter of the dorsolateral prefrontal cortex of four schizophrenia patients and four controls. Detailed methods as well as patient and tissue characteristics can be found in the publication "<b>Maas, D.A., Martens, M.B., Priovoulos, N. <i>et al.</i> Key role for lipids in cognitive symptoms of schizophrenia. <i>Transl Psychiatry</i> 10, </b><b>399 (2020). https://doi.org/10.1038/s41398-020-01084-x</b>" and any questions about this data set may be addressed to Dr. Dorien A. Maas at d.a.maas@outlook.com.
DOI: 10.6084/m9.figshare.5129797.v1
title: Supplementary Material for: The Incidence of Parkinson's Disease: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Parkinson's disease (PD) is a common neurodegenerative disorder. Epidemiological studies on the incidence of PD are important to better understand the risk factors for PD and determine the condition's natural history. <b><i>Objective:</i></b> This systematic review and meta-analysis examine the incidence of PD and its variation by age and gender. <b><i>Methods:</i></b> We searched MEDLINE and EMBASE for epidemiologic studies of PD from 2001 to 2014, as a previously published systematic review included studies published until 2001. Data were analyzed separately for age group and gender, and meta-regression was used to determine whether a significant difference was present between groups. <b><i>Results:</i></b> Twenty-seven studies were included in the analysis. Meta-analysis of international studies showed rising incidence with age in both men and women. Significant heterogeneity was observed in the 80+ group, which may be explained by methodological differences between studies. While males had a higher incidence of PD in all age groups, this difference was only statistically significant for those in the age range 60-69 and 70-79 (p &lt; 0.05). <b><i>Conclusion:</i></b> PD incidence generally increases with age, although it may stabilize in those who are 80+.
DOI: 10.17632/fgvscdjsmt
title: FlameVision : A new dataset for wildfire classification and detection using aerial imagery 

description: The FlameVision dataset is a comprehensive aerial image dataset designed specifically for detecting and classifying wildfires. It consists of a total of 8600 high-resolution images, with 5000 images depicting fire and the remaining 3600 images depicting non-fire scenes. The images are provided in PNG format for classification tasks and JPG format for detection tasks. The dataset is organized into two primary folders, one for detection and the other for classification, with further subdivisions into train, validation, and test sets for each folder. To facilitate accurate object detection, the dataset also includes 4500 image annotation files. These annotation files contain manual annotations in XML format, which specify the exact positions of objects and their corresponding labels within the images. The annotations were performed using Roboflow, ensuring high quality and consistency across the dataset. One of the notable features of the FlameVision dataset is its compatibility with various convolutional neural network (CNN) architectures, including EfficientNet, DenseNet, VGG-16, ResNet50, YOLO, and R-CNN. This makes it a versatile and valuable resource for researchers and practitioners in the field of wildfire detection and classification, enabling the development and evaluation of sophisticated ML models.
DOI: 10.17632/fr2ppgj6c7
title: Data for: Clinical Assessment of Scleral Canal Expansion in Glaucoma Using Spectral Domain Optical Coherence Tomography

description: These data includes demographic data and parameters of the optic nerve head structures measured by using spectral-domain optical coherence tomography in 33 patients with unilateral glaucoma and 70 patients with bilateral glaucoma. These are the data of the paired eyes of the patients. They are divided into the eyes with and without glaucoma in unilateral glaucoma, and eyes with worse and better visual field defect in bilateral glaucoma, and data are loaded in separate columns.
DOI: 10.17632/z22vm55w4r
title: Kerajaan Batak sejak tahun 1511: Geopolitik dan perubahannya

description: Sejarah Batak sejak dahulu jelas ada namun bukan sebagai entitas Geopolitik. Melalui studi literatur terhadap isi dokumen kuno telah ditemukan kata Batak berasal dari nama Kerajaan yang ada ditahun 1511. Bagaimanakah geopolitik kerajaan itu dari zaman ke zaman serta relevansinya saat ini menjadi sesuatu yang menarik untuk dikaji. Dengan meneliti setiap dokumen secara kualitatif dan komparatif maka diperoleh perspektif Geopolitik kerajaan Batak versi Pires, Pinto, Marsden dan Anderson yang diperkuat dukungan dokumen kuno Peta Ortelius maupun Dokumen Hikayat Aceh. Bagaimana selanjutnya eksistensi Kerajaan Batak Pasca penjajahan Kerajaan Belanda maupun setelah tergabung ke Negara Republik Indonesia juga telah terjawab dengan adanya upaya Pemerintah Belanda menata ulang Geopolitik Kerajaan Batak, secara kebetulan penataan itu masih diteruskan sebagai kebijakan Pemerintah Republik Indonesia melalui Undang-Undang tentang Provinsi Sumatera, kembali Batak hanyalah sebatas Entitas Budaya tanpa memiliki kekuasaan Politik maupun Administrasi layaknya sebagaimana entitas lain yang juga memiliki sejarah panjang di Nusantara.
DOI: 10.6084/m9.figshare.26968969.v2
title: Supplementary data to the manuscript titled '<b>In vitro co-culture of </b><b><i>Fasciola hepatica</i></b><b> newly excysted juveniles (NEJs) with 3D HepG2 spheroids permits novel investigation of host-parasite interactions</b>'

description: Supplementary data to the manuscript titled '<b>In vitro co-culture of </b><b><i>Fasciola hepatica</i></b><b> newly excysted juveniles (NEJs) with 3D HepG2 spheroids permits novel investigation of host-parasite interactions</b>'.Files consist of:Supplementary figure 1 - TIF file format;Supplementary figure 1 figure caption - Microsoft Word document (.docx) file format;Captions for the supplementary videos - Microsoft Word document (.docx) file format;Supplementary Video 1 - MPEG-4 file format;Supplementary Video 2 - MPEG-4 file format;Supplementary Video 3 - MPEG-4 file format;Supplementary Video 4 - MPEG-4 file format;Supplementary Data 1. Figure 2. 2D survival and growth data and analysis - Microsoft Excel Workbook (.xlsx) file format;Supplementary Data 2. Figure 3. 3D survival and growth data and analysis - Microsoft Excel Workbook (.xlsx) file format;Supplementary Data 3. Figure 9. 3D CL data and analysis - Microsoft Excel Workbook (.xlsx) file format.<br>