cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10692513
title: Dataset for the publication "Effects of mining activities on fish communities and food web dynamics in a lowland river" in Ecology and Evolution
DOI: 10.6084/m9.figshare.11937570
title: Additional file 15 of Evolution of PHAS loci in the young spike of Allohexaploid wheat

description: Additional file 15: Supplementary Table 7. The predicted targets in MP with scores less than four, as determined by the Targetfinder program.
DOI: 10.6084/m9.figshare.11937570.v1
title: Additional file 15 of Evolution of PHAS loci in the young spike of Allohexaploid wheat

description: Additional file 15: Supplementary Table 7. The predicted targets in MP with scores less than four, as determined by the Targetfinder program.
DOI: 10.6084/m9.figshare.11937576
title: Additional file 16 of Evolution of PHAS loci in the young spike of Allohexaploid wheat

description: Additional file 16: Supplementary Table 8. The target cleavage information in AM (control: SRR3690677) from the degradome datasets.
DOI: 10.6084/m9.figshare.11937576.v1
title: Additional file 16 of Evolution of PHAS loci in the young spike of Allohexaploid wheat

description: Additional file 16: Supplementary Table 8. The target cleavage information in AM (control: SRR3690677) from the degradome datasets.
DOI: 10.6084/m9.figshare.6694703
title: Additional file 2: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

description: Table S2. Summary of lncRNAs identified in the chicken liver libraries. 1. Class code: “x” represent the antisense lncRNAs, “o” represent the sense lncRNAs, “j” represent the intronic lncRNAs, “i” represent the intron lncRNAs, and “u” represent the intergenic lncRNAs; 2. Known/Novel: We used reference genome download on Ensembl (galgal 5). However, there weas few annotated lncRNA in gga5 gtf files. As a result, all novel assembled transcripts (&gt; 200 bp) by cufflinks with non protein-coding potential were labelled as novel lncRNAs. (XLSX 290 kb)
DOI: 10.6084/m9.figshare.6694703.v1
title: Additional file 2: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

description: Table S2. Summary of lncRNAs identified in the chicken liver libraries. 1. Class code: “x” represent the antisense lncRNAs, “o” represent the sense lncRNAs, “j” represent the intronic lncRNAs, “i” represent the intron lncRNAs, and “u” represent the intergenic lncRNAs; 2. Known/Novel: We used reference genome download on Ensembl (galgal 5). However, there weas few annotated lncRNA in gga5 gtf files. As a result, all novel assembled transcripts (&gt; 200 bp) by cufflinks with non protein-coding potential were labelled as novel lncRNAs. (XLSX 290 kb)
DOI: 10.6084/m9.figshare.19801905
title: Additional file 2 of Overexpression of AHL9 accelerates leaf senescence in Arabidopsis thaliana

description: Additional file 2 Table S1 RNA-seq maped reads of WT, AHL9-OE10, and AHL9-OE11 leaf samples.
DOI: 10.6084/m9.figshare.19801905.v1
title: Additional file 2 of Overexpression of AHL9 accelerates leaf senescence in Arabidopsis thaliana

description: Additional file 2 Table S1 RNA-seq maped reads of WT, AHL9-OE10, and AHL9-OE11 leaf samples.
DOI: 10.6084/m9.figshare.25264343
title: Additional file 1 of Poisoning in children and adolescents in Kermanshah city, Iran

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.14559038
title: Additional file 1 of Evaluation of two sexual-stage antigens as bivalent transmission-blocking vaccines in rodent malaria

description: Additional file 1: Table S1. Integration-specific primers for protein expression vector.
DOI: 10.6084/m9.figshare.14559038.v1
title: Additional file 1 of Evaluation of two sexual-stage antigens as bivalent transmission-blocking vaccines in rodent malaria

description: Additional file 1: Table S1. Integration-specific primers for protein expression vector.
DOI: 10.6084/m9.figshare.14559044
title: Additional file 3 of Evaluation of two sexual-stage antigens as bivalent transmission-blocking vaccines in rodent malaria

description: Additional file 3: Table S2. Evaluation of transmission-blocking effect of different immunization groups in mosquito feeding assays.
DOI: 10.6084/m9.figshare.14559044.v1
title: Additional file 3 of Evaluation of two sexual-stage antigens as bivalent transmission-blocking vaccines in rodent malaria

description: Additional file 3: Table S2. Evaluation of transmission-blocking effect of different immunization groups in mosquito feeding assays.
DOI: 10.5281/zenodo.10692463
title: On the Shoulders of Fallen Giants: What do references to retracted research tell us about citation behaviors?

description: The uploaded files consist of one Jupyter Notebook file named "figures_reconstruction.ipynb" for reconstructing figures in the main manuscript, along with a Stata do-file named "reconstruction_main_findings.do" for reconstructing the main regression outputs. Additionally, there are two datasets: "retracted(20221108).csv," which represents the final dataset linking citing articles to retracted articles, and "predicted_margin.xlsx," displaying regression outputs from the main manuscript.
DOI: 10.5281/zenodo.10692464
title: On the Shoulders of Fallen Giants: What do references to retracted research tell us about citation behaviors?

description: The uploaded files consist of one Jupyter Notebook file named "figures_reconstruction.ipynb" for reconstructing figures in the main manuscript, along with a Stata do-file named "reconstruction_main_findings.do" for reconstructing the main regression outputs. Additionally, there are two datasets: "retracted(20221108).csv," which represents the final dataset linking citing articles to retracted articles, and "predicted_margin.xlsx," displaying regression outputs from the main manuscript.
DOI: 10.6084/m9.figshare.14559059
title: Additional file 3 of Tributyltin perturbs femoral cortical architecture and polar moment of inertia in rat

description: Additional file 3.
DOI: 10.6084/m9.figshare.14559059.v1
title: Additional file 3 of Tributyltin perturbs femoral cortical architecture and polar moment of inertia in rat

description: Additional file 3.
DOI: 10.6084/m9.figshare.6694760
title: Additional file 4: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

description: Table S4. Summary of differentially expressed protein-coding genes between mature livers and immature livers in chickens. (XLSX 498Â kb)
DOI: 10.6084/m9.figshare.6694760.v1
title: Additional file 4: of Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

description: Table S4. Summary of differentially expressed protein-coding genes between mature livers and immature livers in chickens. (XLSX 498Â kb)
DOI: 10.34740/kaggle/dsv/7678006
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.6084/m9.figshare.17704839
title: Transcriptome profiling revealed heat stress-responsive genes in <i>Arabidopsis</i> through integrated bioinformatics analysis

description: Heat stress is an environmental challenge that reduces plant productivity and growth. Plants have developed corresponding mechanisms to survive this adverse environmental stress. To demonstrate the mechanisms of how plants adapt to the environmental challenge, the heat response experiments involving <i>Arabidopsis thaliana</i> were retrieved from the GEO database. After quantile normalization of the GEO raw data, the differentially expressed genes (DEGs) in response to heat stress were identified by robust rank aggregation (RRA) algorithm, including 384 up-regulated and 302 down-regulated genes. Then, systematic bioinformatics analyses disclosed that the up-regulated DEGs were mainly related to protein refolding, abscisic acid catabolic process, potassium ion import, response to hydrogen peroxide, cytochrome complex assembly, and apoptotic process, and the down-regulated DEGs were involved in microsporocyte differentiation, syncytium formation, adventitious development, glutathione metabolism, and glycine metabolic process. The up-regulated DEGs also had more complicated PPI interactions than the down-regulated DEGs, and potential core genes of heat stress tolerance were provided. Furthermore, the mRNA expression of core genes <i>Hsp70-2</i> (At5g02490), <i>Hsp70-3</i> (At3g09440), and <i>Hsp70-4</i> (At3g12580) has been measured to validate the outcome of integrated bioinformatics analysis. Our work will extend our understanding of heat-responsive mechanisms and these DEGs might be potential markers for plant heat stress-resistance studies.
DOI: 10.6084/m9.figshare.17704839.v1
title: Transcriptome profiling revealed heat stress-responsive genes in <i>Arabidopsis</i> through integrated bioinformatics analysis

description: Heat stress is an environmental challenge that reduces plant productivity and growth. Plants have developed corresponding mechanisms to survive this adverse environmental stress. To demonstrate the mechanisms of how plants adapt to the environmental challenge, the heat response experiments involving <i>Arabidopsis thaliana</i> were retrieved from the GEO database. After quantile normalization of the GEO raw data, the differentially expressed genes (DEGs) in response to heat stress were identified by robust rank aggregation (RRA) algorithm, including 384 up-regulated and 302 down-regulated genes. Then, systematic bioinformatics analyses disclosed that the up-regulated DEGs were mainly related to protein refolding, abscisic acid catabolic process, potassium ion import, response to hydrogen peroxide, cytochrome complex assembly, and apoptotic process, and the down-regulated DEGs were involved in microsporocyte differentiation, syncytium formation, adventitious development, glutathione metabolism, and glycine metabolic process. The up-regulated DEGs also had more complicated PPI interactions than the down-regulated DEGs, and potential core genes of heat stress tolerance were provided. Furthermore, the mRNA expression of core genes <i>Hsp70-2</i> (At5g02490), <i>Hsp70-3</i> (At3g09440), and <i>Hsp70-4</i> (At3g12580) has been measured to validate the outcome of integrated bioinformatics analysis. Our work will extend our understanding of heat-responsive mechanisms and these DEGs might be potential markers for plant heat stress-resistance studies.
DOI: 10.6084/m9.figshare.6694799
title: Additional file 4: of Comparative genome-wide characterization leading to simple sequence repeat marker development for Nicotiana

description: Table S3 Information for experimentally validated markers. (XLS 51 kb)
DOI: 10.6084/m9.figshare.6694799.v1
title: Additional file 4: of Comparative genome-wide characterization leading to simple sequence repeat marker development for Nicotiana

description: Table S3 Information for experimentally validated markers. (XLS 51 kb)
DOI: 10.25549/whit-c170-105229
title: Palm Springs, Riverside County, Calif., 1939

description: 23 photographs of Palm Springs, California, 1939 February. Included are streets, buildings, tennis courts, rental bicycles, residences, swimming pools, and mountains in the background.
DOI: 10.25549/whit-c170-105231
title: Palm Springs, Riverside County, Calif., 1939

description: 23 photographs of Palm Springs, California, 1939 February. Included are streets, buildings, tennis courts, rental bicycles, residences, swimming pools, and mountains in the background.
DOI: 10.15468/dl.bhc1v5
title: Occurrence Download

description: A dataset containing 557 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidobotryaceae"
 ]
}

 The dataset includes 557 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085413-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-103984
title: U.C.L.A. football, Los Angeles, Calif., 1940

description: 18 photographs of the 1940 University of California, Los Angeles, football team, Los Angeles, California, 1940 September 12. Aside from single and group portraits, these images include players jumping over the backs of others on hands and knees, a player holding the football with one hand while the other is poised to stop the camera, a padded man catching a helmeted player, and the view through a player's legs before a snap.
DOI: 10.15468/dl.6xk5v2
title: Occurrence Download

description: A dataset containing 660 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Romneya Harv."
 ]
}

 The dataset includes 660 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085415-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-103980
title: U.C.L.A. football, Los Angeles, Calif., 1940

description: 18 photographs of the 1940 University of California, Los Angeles, football team, Los Angeles, California, 1940 September 12. Aside from single and group portraits, these images include players jumping over the backs of others on hands and knees, a player holding the football with one hand while the other is poised to stop the camera, a padded man catching a helmeted player, and the view through a player's legs before a snap.
DOI: 10.25549/whit-c170-103981
title: U.C.L.A. football, Los Angeles, Calif., 1940

description: 18 photographs of the 1940 University of California, Los Angeles, football team, Los Angeles, California, 1940 September 12. Aside from single and group portraits, these images include players jumping over the backs of others on hands and knees, a player holding the football with one hand while the other is poised to stop the camera, a padded man catching a helmeted player, and the view through a player's legs before a snap.
DOI: 10.15468/dl.vq2ixg
title: Occurrence Download

description: A dataset containing 2070 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alvaradoa Liebm."
 ]
}

 The dataset includes 2070 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085416-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-105076
title: Death Valley, Inyo County, Calif., 1939

description: 79 photographs of Death Valley, a desert area primarily in Inyo County, California, 1939 February.
DOI: 10.15468/dl.7efyu8
title: Occurrence Download

description: A dataset containing 982 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Torricelliaceae"
 ]
}

 The dataset includes 982 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085419-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-105093
title: Death Valley, Inyo County, Calif., 1939

description: 79 photographs of Death Valley, a desert area primarily in Inyo County, California, 1939 February.
DOI: 10.15468/dl.ghb2zn
title: Occurrence Download

description: A dataset containing 214 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Meiocarpidium Engl. & Diels"
 ]
}

 The dataset includes 214 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085421-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-105101
title: Death Valley, Inyo County, Calif., 1939

description: 79 photographs of Death Valley, a desert area primarily in Inyo County, California, 1939 February.
DOI: 10.15468/dl.wgqtww
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyrtodactylus khasiensis (Jerdon, 1870)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085424-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-105083
title: Death Valley, Inyo County, Calif., 1939

description: 79 photographs of Death Valley, a desert area primarily in Inyo County, California, 1939 February.
DOI: 10.25549/whit-c170-105080
title: Death Valley, Inyo County, Calif., 1939

description: 79 photographs of Death Valley, a desert area primarily in Inyo County, California, 1939 February.
DOI: 10.15468/dl.31eyhc
title: Occurrence Download

description: A dataset containing 679 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microsciurus J.A.Allen, 1895",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 679 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085426-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-54642
title: County Hospital, Sea Side Products Corporation, Los Angeles, CA, 1932

description: 12 photographs of the construction of County Hospital, Los Angeles, CA, 1932. "Subject: County Hospital; Client: Sea Side Products Corp[oration], 1228 Produce st[reet]; Original Print Order: 1- ea[ch]; Size: 8 1/2x11; Finish: gl[ossy]; Mount: linen; Job: 10-24-165; Year: 1932" -- on envelope front. "Operator's Report (Name): Frank; Original Photographs-Size: 12-8x11; 2 Ounces of Flash Powder; Amount: 15.00, 1.70" -- on envelope back.
DOI: 10.15468/dl.lrseof
title: Occurrence Download

description: A dataset containing 532 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella uncinata (Desv. ex Poir.) Spring"
 ]
}

 The dataset includes 532 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085427-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-54778
title: Battery department, Southern California, 1932

description: 2 photographs of men working at car battery factory, Southern California, 1932. "Subject: Battery dep[artmen]t; Client: Frank Dillon; Original Print Order: 1 ea[ch]; Size: 8x10; Finish: gl[ossy], dull; Re-order: 1 ea[ch]; Year: 1932; Job: 11-9-49" -- on envelope front. "Operator's Report Name: Joe; 2 Original Photographs-Size: 8x10; Amount: 5.50" -- on envelope back.
DOI: 10.15468/dl.3zciha
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Picrorhiza kurrooa Royle",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "Geometry POLYGON((73.652343 30.221101,74.267578 31.203404,74.267578 31.802892,73.916015 32.694865,73.300781 33.651208,73.037109 34.669358,73.652343 35.245619,72.773437 35.675147,73.037109 36.597889,74.091796 37.020098,75.146484 37.090239,75.9375 36.949891,76.376953 36.385912,77.080078 35.960222,77.607421 35.746512,78.662109 36.102376,80.419921 35.889050,80.507812 35.532226,80.15625 34.885930,79.716796 34.524661,79.189453 34.234512,79.189453 33.943359,79.365234 33.578014,79.365234 32.990235,79.277343 32.249974,79.189453 31.952162,79.189453 31.503629,79.277343 31.052933,82.265625 30.297017,82.089843 29.382175,81.826171 29.075375,78.222656 27.683528,76.640625 28.071980,74.707031 28.536274,74.003906 29.228890,74.003906 29.228890,74.003906 29.228890,73.652343 30.221101))"
 ]
}

 The dataset includes 30 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085428-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cnqjba
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "GenusKey" : [
 "is Swartzia Schreb., 1791"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006224-240506114902167/datasets/export for details.
DOI: 10.25549/whit-c170-101799
title: Whittington models, Los Angeles, Calif., 1941

description: 4 photographs of a pair of twin girls, unidentified, Los Angeles, California, 1941 March 27.
DOI: 10.15468/dl.op1oa0
title: Occurrence Download

description: A dataset containing 532 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Selaginella uncinata (Desv. ex Poir.) Spring",
 "TaxonKey is Selaginella uncinata (Desv.) Spring"
 ]
}

 The dataset includes 532 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085430-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-101491
title: Scenes Kern and King Counties #3, California, 1941

description: 15 photographs of the countryside in Kern and Kings Counties of California, 1941 March 28. Handwriting on the negatives includes: "10 Cotton - King County; 8 Kern County; 14 Kern County; 7 Ridge r[ou]t[e]; 12 Kern River; 4 Kern River; 6 Ridge r[ou]t[e]; 3 Kern County; 5 King County; 15 Kern County Rock Co[mpany] (quarry and rock crushing)." "Do not hold back foreground in #8; Print order: 1 ea[ch]; Size: 8x10; Finish: gl[ossy]; 1 #8; Size: 84x36; Finish: dull; Mount: Defender m[oun]t]e]d; 1 #8; Size: 8x10; Finish: gl[ossy]; 1 # 2; Size: 8x10; Finish: gl[ossy]; 1 #1; Size: 8x10; Finish: gl[ossy]; #2; Size: 11/14; 1 #16; Size: 8x10; Finish: gl[ossy" -- from front of envelope half #1. "Reproduction rights sold to #8 - Rudolph Dick 5/[19]41; #2 - Felix Zelenka 3/[19]42; #8 Weber Showcase 9/]9; #16 - CBS 12/[19]42" -- from back of envelope half #1. "Do not hold back foreground in #8; Print order: 1 #1; Size; 8x10; Finish: gl[ossy]; 1 #2; Size; 8x10; Finish: gl[ossy]; 1 #9; Size; 8x10; Finish: gl[ossy]; 1 ea[ch] 2, 7; Size: 4x5; Finish: gl[ossy]; 1 #1; Size: 4x5; Finish: gl[ossy]; 1 #15; Size: 4x5; Finish: gl[ossy]" from front of envelope half #2. "Reproduction rights sold to: McCarty Co[mpany] 3/[19]45; #9 Morse & Morse 12/[19]49" -- from back of envelope half #2.
DOI: 10.15468/dl.bl0yhj
title: Occurrence Download

description: A dataset containing 857 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Selaginella plana (Desv. ex Poir.) Hieron.",
 "TaxonKey is Selaginella uncinata (Desv. ex Poir.) Spring",
 "TaxonKey is Selaginella uncinata (Desv.) Spring"
 ]
}

 The dataset includes 857 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085433-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-105926
title: Mother's Day, Los Angeles, Calif., 1942

description: 21 photographs of a woman (probably a model) opening gifts, slicing a cake, and reading a Mother's Day letter, Los Angeles, California, 1942 April 23.