cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13322456
title: Shaw Nature Reserve - A division of the Missouri Botanical Garden: Lily Database

description: Horticultural information provided by Scott Woodbury, horticulturalist at the Shaw Nature Reserve, Gray Summit, Missouri.
DOI: 10.5281/zenodo.13322457
title: Shaw Nature Reserve - A division of the Missouri Botanical Garden: Lily Database

description: Horticultural information provided by Scott Woodbury, horticulturalist at the Shaw Nature Reserve, Gray Summit, Missouri.
DOI: 10.15468/dl.jdmbbn
title: Occurrence Download

description: A dataset containing 42575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Living Specimen, Occurrence evidence, Material citation, Material sample, Human Observation, Machine Observation)",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (CR, EN, VU)",
 "OccurrenceStatus is Present",
 "Year 2022-2025"
 ]
}

 The dataset includes 42575 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000327-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.354xfg
title: Occurrence Download

description: A dataset containing 42575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Living Specimen, Occurrence evidence, Material citation, Material sample, Human Observation, Machine Observation)",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (CR, EN, VU)",
 "OccurrenceStatus is Present",
 "Year 2022-2025"
 ]
}

 The dataset includes 42575 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000328-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9a2hf5
title: Occurrence Download

description: A dataset containing 488594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "Year 2015-2015"
 ]
}

 The dataset includes 488594 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000314-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13321740
title: TaiEOL: The Fish Database of Taiwan - DwCA

description: https://fishdb.sinica.edu.tw/

Academia Sinica
DOI: 10.5281/zenodo.13321741
title: TaiEOL: The Fish Database of Taiwan - DwCA

description: https://fishdb.sinica.edu.tw/

Academia Sinica
DOI: 10.15468/dl.89uvzy
title: Occurrence Download

description: A dataset containing 2009620 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Paraguay, Uruguay, Bolivia (Plurinational State of), Venezuela (Bolivarian Republic of), Chile, Peru, Ecuador, Argentina, Colombia, Brazil)",
 "DatasetKey is one of (RB - Rio de Janeiro Botanical Garden Herbarium Collection, Museo Argentino de Ciencias Naturales \"Bernardino Rivadavia\" (MACN). Herpetology National Collection (MACNHe), International Barcode of Life project (iBOL), MCP-Anfibios - Coleção de Anfíbios, NMNH Extant Specimen Records (USNM, US), MBML-Anfibios - Coleção de Anfíbios MBML, Occurrences in SinBiota, FNJV - Fonoteca Neotropical Jacques Vielliard, ZUEC-AMP - Coleção de Anfíbios do Museu de Zoologia da UNICAMP, INSDC Sequences)",
 "PublishingOrg is one of (2e4af590-37d0-11d9-8439-b8a03c50a862, b3bf3a83-1f68-4541-a03f-330d30d567f5, e6c2fab8-8716-48b8-ae62-dacbc73b35b5, bc092ff0-02e4-11dc-991f-b8a03c50a862, 667644b9-7b93-4892-80c7-c4271735c515, b035747d-16a4-46e1-b599-599d43e1acc9, d073b448-6b80-4364-8c38-18d08b88797f)"
 ]
}

 The dataset includes 2009620 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000316-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zfv88z
title: Occurrence Download

description: A dataset containing 446 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Lithobates kauffeldi (Feinberg, Newman, Watkins-Colwell, Schlesinger, Zarate, Curry, Shaffer & Burger, 2014))"
 ]
}

 The dataset includes 446 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000330-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13313937
title: TRAM-804 Integrated Taxonomic Information System (ITIS) Taxonomic Hierarchy: ITIS hierarchy from 28-Aug-2019 downloads

description: Authoritative taxonomic information on plants, animals, fungi, and microbes of North America and the world. ITIS ia a partnership of U.S., Canadian, and Mexican agencies (ITIS-North America); other organizations; and taxonomic specialists. ITIS is also a partner of Species 2000 and the Global Biodiversity Information Facility (GBIF).
https://eol-jira.bibalex.org/browse/DATA-1824
DOI: 10.5281/zenodo.13313936
title: TRAM-804 Integrated Taxonomic Information System (ITIS) Taxonomic Hierarchy: ITIS hierarchy from 28-Aug-2019 downloads

description: Authoritative taxonomic information on plants, animals, fungi, and microbes of North America and the world. ITIS ia a partnership of U.S., Canadian, and Mexican agencies (ITIS-North America); other organizations; and taxonomic specialists. ITIS is also a partner of Species 2000 and the Global Biodiversity Information Facility (GBIF).
https://eol-jira.bibalex.org/browse/DATA-1824
DOI: 10.5281/zenodo.13319849
title: Water Body Checklists 2019: Gulf of Guinea Species List

description: Species checklists created using effechecka and modified polygons from IHO. The polygons were reduced in resolution.List of species collected from the Gulf of Guinea using effechecka and a modified polygon from the International Hydrographic Association. A filter was applied (based on data from WoRMS) to remove all non-marine taxa.
DOI: 10.5281/zenodo.13319850
title: Water Body Checklists 2019: Gulf of Guinea Species List

description: Species checklists created using effechecka and modified polygons from IHO. The polygons were reduced in resolution.List of species collected from the Gulf of Guinea using effechecka and a modified polygon from the International Hydrographic Association. A filter was applied (based on data from WoRMS) to remove all non-marine taxa.
DOI: 10.5281/zenodo.13322740
title: EOL China: Fungi

description: This is where EOL hosts source datasets (archives, dumps, etc.) from EOL content partners (especially partners without a web presence of their own).

This organization will also include the content partner utility files EOL connectors use to generate a particular content partner__s resource EOL archive or XML.

For questions or suggestions please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13322741
title: EOL China: Fungi

description: This is where EOL hosts source datasets (archives, dumps, etc.) from EOL content partners (especially partners without a web presence of their own).

This organization will also include the content partner utility files EOL connectors use to generate a particular content partner__s resource EOL archive or XML.

For questions or suggestions please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13293716
title: EOL Dynamic Hierarchy, digest form, January 2019: Dynamic hierarchy digest January 2019

description: __Digest__ of the EOL dynamic hierarchy prepared by querying the online traits database. Unlike the full DH files, this file provides only the bare minimum information for each taxon: page id, parent page id, canonical name.Zip file containing a README and a three-column CSV (pages.csv) with header row
DOI: 10.5281/zenodo.13293715
title: EOL Dynamic Hierarchy, digest form, January 2019: Dynamic hierarchy digest January 2019

description: __Digest__ of the EOL dynamic hierarchy prepared by querying the online traits database. Unlike the full DH files, this file provides only the bare minimum information for each taxon: page id, parent page id, canonical name.Zip file containing a README and a three-column CSV (pages.csv) with header row
DOI: 10.15468/dl.b6ab47
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-102.03747 32.23099,-80.88893 32.23099,-80.88893 40.68679,-102.03747 40.68679,-102.03747 32.23099))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pepsis Fabricius, 1805"
 ]
}

 The dataset includes 146 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000331-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3kfn9
title: Occurrence Download

description: A dataset listing the 11 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-11.6858 38.57495,-4.66883 34.49531,16.70845 37.10628,46.48978 39.06451,46.00023 51.62978,37.34311 68.82095,25.26739 73.06377,2.25825 64.9045,-11.77569 53.48152,-11.6858 38.57495))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Primula elatior (L.) L."
 ]
}

 The dataset's 11 records were derived from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000322-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13322975
title: Marine Invaders of the NE Pacific (myspecies): Resource (232) DwCA

description: This is where EOL hosts source datasets (archives, dumps, etc.) from EOL content partners (especially partners without a web presence of their own).

This organization will also include the content partner utility files EOL connectors use to generate a particular content partner__s resource EOL archive or XML.

For questions or suggestions please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13322974
title: Marine Invaders of the NE Pacific (myspecies): Resource (232) DwCA

description: This is where EOL hosts source datasets (archives, dumps, etc.) from EOL content partners (especially partners without a web presence of their own).

This organization will also include the content partner utility files EOL connectors use to generate a particular content partner__s resource EOL archive or XML.

For questions or suggestions please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13235609
title: Publications using EOL structured data: 2020

description: found primarily via Google Scholar, searching by mentions in the methods sections. Citing EOL is not required when using EOL-hosted records; only the primary source must be cited. Thus, these lists may not be exhaustive.For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at 
http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13235610
title: Publications using EOL structured data: 2019

description: found primarily via Google Scholar, searching by mentions in the methods sections. Citing EOL is not required when using EOL-hosted records; only the primary source must be cited. Thus, these lists may not be exhaustive.
description: For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13285974
title: Publications using EOL structured data: 2020

description: found primarily via Google Scholar, searching by mentions in the methods sections. Citing EOL is not required when using EOL-hosted records; only the primary source must be cited. Thus, these lists may not be exhaustive.
description: For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13286167
title: Publications using EOL structured data: 2020

description: found primarily via Google Scholar, searching by mentions in the methods sections. Citing EOL is not required when using EOL-hosted records; only the primary source must be cited. Thus, these lists may not be exhaustive.
description: For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13291601
title: Publications using EOL structured data: 2020

description: found primarily via Google Scholar, searching by mentions in the methods sections. Citing EOL is not required when using EOL-hosted records; only the primary source must be cited. Thus, these lists may not be exhaustive.For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at 
http://discuss.eol.org/c/eol-services
DOI: 10.15468/dl.h5r42d
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Lithobates okaloosae (Moler, 1985))"
 ]
}

 The dataset includes 62 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000332-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13319764
title: Water Body Checklists 2019: Bali Sea Species List

description: Species checklists created using effechecka and modified polygons from IHO. The polygons were reduced in resolution.List of species collected from the Bali Sea using effechecka and a modified polygon from the International Hydrographic Association. A filter was applied (based on data from WoRMS) to remove all non-marine taxa.
DOI: 10.5281/zenodo.13319765
title: Water Body Checklists 2019: Bali Sea Species List

description: Species checklists created using effechecka and modified polygons from IHO. The polygons were reduced in resolution.List of species collected from the Bali Sea using effechecka and a modified polygon from the International Hydrographic Association. A filter was applied (based on data from WoRMS) to remove all non-marine taxa.
DOI: 10.5281/zenodo.13322659
title: AquaParadox: The Diversity of Planktonic Microorganisms

description: The collection of images and videos was originally developed as an outreach effort of a multi-partner research project called Aquaparadox (from Hutchinson__s __Paradox of the Plankton"). In the project we examined morphological, genetic and physiological diversity in common coastal protist morpho-species, that is morphologically-defined species. Subjects of study included a wide range of protists: 1) grazers of the sea - tintinnid ciliates, 2) autotrophs, that is __plant__ or phytoplankton forms- the dinoflagellate Ceratium and the small flagellate Micromonas and 3) the dinoflagellate parasite Syndiniales. The project was financed from 2008 through 2011 and involved 4 laboratories: The Microbial Ecology Group of the Laboratoire d__Océanographie de Villefranche (alas, a now defunct group), The Oceanic Plankton Group in Roscoff, The Microbial Diversity and Evolution Group of the University of Paris XI (Paris-Sud) and the Virtual Biology Laboratory of the University of Nice Sophia-Antipolis. Financial support was from the ANR and Pôle Mer PACA (France). http://aquaparadox.obs-vlfr.fr/
DOI: 10.5281/zenodo.13322660
title: AquaParadox: The Diversity of Planktonic Microorganisms

description: The collection of images and videos was originally developed as an outreach effort of a multi-partner research project called Aquaparadox (from Hutchinson__s __Paradox of the Plankton"). In the project we examined morphological, genetic and physiological diversity in common coastal protist morpho-species, that is morphologically-defined species. Subjects of study included a wide range of protists: 1) grazers of the sea - tintinnid ciliates, 2) autotrophs, that is __plant__ or phytoplankton forms- the dinoflagellate Ceratium and the small flagellate Micromonas and 3) the dinoflagellate parasite Syndiniales. The project was financed from 2008 through 2011 and involved 4 laboratories: The Microbial Ecology Group of the Laboratoire d__Océanographie de Villefranche (alas, a now defunct group), The Oceanic Plankton Group in Roscoff, The Microbial Diversity and Evolution Group of the University of Paris XI (Paris-Sud) and the Virtual Biology Laboratory of the University of Nice Sophia-Antipolis. Financial support was from the ANR and Pôle Mer PACA (France). http://aquaparadox.obs-vlfr.fr/
DOI: 10.5281/zenodo.13319836
title: Water Body Checklists 2019: Gulf of Aqaba Species List

description: Species checklists created using effechecka and modified polygons from IHO. The polygons were reduced in resolution.List of species collected from the Gulf of Aqaba using effechecka and a modified polygon from the International Hydrographic Association. A filter was applied (based on data from WoRMS) to remove all non-marine taxa.
DOI: 10.5281/zenodo.13319835
title: Water Body Checklists 2019: Gulf of Aqaba Species List

description: Species checklists created using effechecka and modified polygons from IHO. The polygons were reduced in resolution.List of species collected from the Gulf of Aqaba using effechecka and a modified polygon from the International Hydrographic Association. A filter was applied (based on data from WoRMS) to remove all non-marine taxa.
DOI: 10.5281/zenodo.13322696
title: efloras

description: This is where EOL hosts source datasets (archives, dumps, etc.) from EOL content partners (especially partners without a web presence of their own).

This organization will also include the content partner utility files EOL connectors use to generate a particular content partner__s resource EOL archive or XML.

For questions or suggestions please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13322697
title: efloras

description: This is where EOL hosts source datasets (archives, dumps, etc.) from EOL content partners (especially partners without a web presence of their own).

This organization will also include the content partner utility files EOL connectors use to generate a particular content partner__s resource EOL archive or XML.

For questions or suggestions please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.15468/dl.s554pk
title: Occurrence Download

description: A dataset containing 613 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hygrocybe substrangulata (P.D.Orton) P.D.Orton & Watling",
 "Year 1985-2024"
 ]
}

 The dataset includes 613 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000333-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ah965j
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Rana onca Cope, 1875)"
 ]
}

 The dataset includes 212 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000334-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13240327
title: EOL Dynamic Hierarchy Patch: EOL Dynamic Hierarchy Patch 2.2

description: A taxonomic patch for the EOL dynamic hierarchy.
DOI: 10.5281/zenodo.13283241
title: EOL Dynamic Hierarchy Patch: EOL Dynamic Hierarchy Patch 2.2

description: A taxonomic patch for the EOL dynamic hierarchy.
DOI: 10.5281/zenodo.13321982
title: BİLECENOĞLU, et al, 204: BİLECENOĞLU et al, 2014

description: BİLECENOĞLU, MURAT, Murat Kaya, BÜLENT CİHANGİR, and ERDOĞAN ÇİÇEK. "An updated checklist of the marine fishes of Turkey." Turkish Journal of Zoology 38, no. 6 (2014): 901-929.BİLECENOĞLU, MURAT, Murat Kaya, BÜLENT CİHANGİR, and ERDOĞAN ÇİÇEK. 2014. "An updated checklist of the marine fishes of Turkey." Turkish Journal of Zoology 38, no. 6 (2014): 901-929. 
http://dergipark.gov.tr/download/article-file/135643
DOI: 10.5281/zenodo.13321983
title: BİLECENOĞLU, et al, 204: BİLECENOĞLU et al, 2014

description: BİLECENOĞLU, MURAT, Murat Kaya, BÜLENT CİHANGİR, and ERDOĞAN ÇİÇEK. "An updated checklist of the marine fishes of Turkey." Turkish Journal of Zoology 38, no. 6 (2014): 901-929.BİLECENOĞLU, MURAT, Murat Kaya, BÜLENT CİHANGİR, and ERDOĞAN ÇİÇEK. 2014. "An updated checklist of the marine fishes of Turkey." Turkish Journal of Zoology 38, no. 6 (2014): 901-929. 
http://dergipark.gov.tr/download/article-file/135643
DOI: 10.5281/zenodo.14860733
title: Dataset for "One-Size-Fits-Many: Antisense oligonucleotides for rescuing splicing mutations in hotspot exons"

description: Scripts and supplementary data related to the manuscript "One-Size-Fits-Many: Antisense oligonucleotides for rescuing splicing mutations in hotspot exons"

geisinger_mapsy_design.tar.gz - Contains the data and scripts used to generate the MaPSy oligo sequences from the Geisinger and ClinVar variant datasets.

geisinger_mapsy_analysis.tar.gz - Contains the data and scripts for mapping the sequencing results of the MaPSy experiments and deriving metrics such as splicing efficiencies and log allelic fold for the oligo species in the processed libraries.

figure_[1,2,3].zip - Contains the scripts to perform the analysis and create the plots presented in the referenced figures
DOI: 10.5281/zenodo.14860734
title: Dataset for "One-Size-Fits-Many: Antisense oligonucleotides for rescuing splicing mutations in hotspot exons"

description: Scripts and supplementary data related to the manuscript "One-Size-Fits-Many: Antisense oligonucleotides for rescuing splicing mutations in hotspot exons"

geisinger_mapsy_design.tar.gz - Contains the data and scripts used to generate the MaPSy oligo sequences from the Geisinger and ClinVar variant datasets.

geisinger_mapsy_analysis.tar.gz - Contains the data and scripts for mapping the sequencing results of the MaPSy experiments and deriving metrics such as splicing efficiencies and log allelic fold for the oligo species in the processed libraries.

figure_[1,2,3].zip - Contains the scripts to perform the analysis and create the plots presented in the referenced figures
DOI: 10.5281/zenodo.13323070
title: Cryptocephalinae of the World (myspecies): Resource (110) DwCA

description: This is where EOL hosts source datasets (archives, dumps, etc.) from EOL content partners (especially partners without a web presence of their own).

This organization will also include the content partner utility files EOL connectors use to generate a particular content partner__s resource EOL archive or XML.

For questions or suggestions please visit the EOL Services forum at http://discuss.eol.org/c/eol-services