cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1m528
title: Data from: MRI mouse brain data of ischemic lesion after transient middle cerebral artery occlusion

description: In this data report we make available to the community a highly variable
 longitudinal MRI mouse brain data set of ischemic lesion after transient
 middle cerebral artery occlusion (tMCAo). Together with the provided
 semi-automated and automated segmentations, these data can be used to
 further improve the method proposed by Mulder et al. (2017) and also to
 serve as a benchmark for comparison between different approaches to
 segment ischemic lesions in MRI mouse brain data. It can also be used to
 develop and validate algorithms that further classify the stroke area into
 core and penumbra.
description: READ_ME CHANGES_LOG
 Cologne-Set-1<br> Cologne-Set-2
 Leiden-Set-T2maps_Segmentations
 3-5month_old_mice_PART_1<br>
 3-5month_old_mice_PART_2<br> 3-5month_old_mice_PART_3
 12-14month_old_mice<br> 20-24month_old_mice
 LS_MHD_echoes_PART_1<br> LS_MHD_echoes_PART_2
 Pulseprogram_files
 Template_Dataset_and_Labels
DOI: 10.5061/dryad.1mj31
title: Data from: Identification of SNP markers for inferring phylogeny in temperate bamboos (Poaceae: Bambusoideae) using RAD sequencing

description: Phylogenetic relationships among temperate species of bamboo are difficult
 to resolve, owing to both the challenge of detecting sufficiently variable
 markers and their polyploid history. Here, we use restriction
 site–associated DNA sequencing to identify candidate loci with fixed
 allelic differences segregating between and within two temperate species
 of bamboos: Arundinaria faberi and Yushania brevipaniculata. Approximately
 27 million paired-end sequencing reads were generated across four samples.
 From pooled data, we assembled 67 685 and 70 668 de novo contigs from
 partial overlap among paired-end reads, with an average length of 240 and
 241 bp for the two species, respectively, which were used to investigate
 functional classification of RAD tags in a blastx search. Analysed
 separately by population, we recovered 29 443 putatively orthologous RAD
 tags shared across the four sampled populations, containing 28 023
 sequence variants, of which c. 13 000 are segregating between species, and
 c. 3000 segregating between populations within each species. Analyses
 based on these RAD tags yielded robust phylogenetic inferences, even with
 data set constructed from surprisingly few loci. This study illustrates
 the potential for reduced-representation genome data to resolve difficult
 phylogenetic relationships in temperate bamboos.
description: RAD data for bamboos:
 phy and fa filesRAD data for
 bamboos.rarRAD data for bamboos:
 paired readsRADdata_bamboos.rar
DOI: 10.15468/dl.e77cgs
title: Occurrence Download

description: A dataset containing 1230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is one of (USA.45.13_1, USA.45.9_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 1230 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000431-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.35079/hbm989.fzkr.424
title: Visium (no probes) data from the ovary (left) of a 19-year-old white female
DOI: 10.35079/hbm499.dwln.492
title: Visium (no probes) data from the ovary (left) of a 19-year-old white female
DOI: 10.5061/dryad.84393
title: Data from: Ocean sunfish rewarm at the surface after deep excursions to forage for siphonophores

description: 1. Ocean sunfish (Mola mola) were believed to be inactive jellyfish
 feeders because they are often observed lying motionless at the sea
 surface. Recent tracking studies revealed that they are actually deep
 divers, but there has been no evidence of foraging in deep water.
 Furthermore, the surfacing behaviour of ocean sunfish was thought to be
 related to behavioural thermoregulation, but there was no record of
 sunfish body temperature. 2. Evidence of ocean sunfish feeding in deep
 water was obtained using a combination of an animal-borne accelerometer
 and camera with a light source. Siphonophores were the most abundant prey
 items captured by ocean sunfish and were typically located at a depth of
 50–200 m where the water temperature was &lt;12°C. Ocean sunfish were
 diurnally active, made frequently deep excursions, and foraged mainly at
 100–200-m depths during the day. 3. Ocean sunfish body temperatures were
 measured under natural conditions. The body temperatures decreased during
 deep excursions and recovered during subsequent surfacing periods.
 Heat-budget models indicated that the whole-body heat-transfer coefficient
 between sunfish and the surrounding water during warming was 3–7 times
 greater than that during cooling. These results suggest that the main
 function of surfacing is the recovery of body temperature, and the fish
 might be able to increase heat gain from the warm surface water by
 physiological regulation. 4. The thermal environment of ocean sunfish
 foraging depths was lower than their thermal preference (approx. 16–17°C).
 The behavioural and physiological thermoregulation enables the fish to
 increase foraging time in deep, cold water. 5. Feeding rate during deep
 excursions was not related to duration or depth of the deep excursions.
 Cycles of deep foraging and surface warming were explained by a foraging
 strategy, to maximize foraging time with maintaining body temperature by
 vertical temperature environment.
description: Accelerometers,
 animal-borne cameras, and body temperature recorders attached to ocean
 sunfish in 2012 and 2013Behavioural data
 produced by Little Leonardo accelerometers, visual data produced by Little
 Leonardo digital still camera or video camera, and body temperature data
 produced by Lotek depth temperature recorders. Each folder are named as
 fish IDs in a tagging information excel file. The excel file also include
 calibration parameters for the accelerometers. Each folder contains text
 files output from Little Leonardo software, a folder which contains a cvs
 file and images from camera, and a cvs file output from Lotek
 software.MolaData.zip
DOI: 10.35079/hbm826.rvvr.263
title: Visium (no probes) data from the ovary (left) of a 19-year-old white female
DOI: 10.35079/hbm676.hxxr.723
title: Visium (no probes) data from the ovary (left) of a 19-year-old white female
DOI: 10.5061/dryad.kd1d4
title: Data from: Climatologies at high resolution for the earth's land surface areas

description: High-resolution information on climatic conditions is essential to many
 applications in environmental and ecological sciences. Here we present the
 CHELSA (Climatologies at high resolution for the earth’s land surface
 areas) data of downscaled model output temperature and precipitation
 estimates of the ERA-Interim climatic reanalysis to a high resolution of
 30 arc sec. The temperature algorithm is based on statistical downscaling
 of atmospheric temperatures. The precipitation algorithm incorporates
 orographic predictors including wind fields, valley exposition, and
 boundary layer height, with a subsequent bias correction. The resulting
 data consist of a monthly temperature and precipitation climatology for
 the years 1979–2013. We compare the data derived from the CHELSA algorithm
 with other standard gridded products and station data from the Global
 Historical Climate Network. We compare the performance of the new
 climatologies in species distribution modelling and show that we can
 increase the accuracy of species range predictions. We further show that
 CHELSA climatological data has a similar accuracy as other products for
 temperature, but that its predictions of precipitation patterns are
 better.
description: CHELSA_prec_1_landCHELSA_prec_2_landCHELSA_prec_3_landCHELSA_prec_4_landCHELSA_prec_5_landCHELSA_prec_6_landCHELSA_prec_7_landCHELSA_prec_8_landCHELSA_prec_9_landCHELSA_prec_10_landCHELSA_prec_11_landCHELSA_prec_12_landCHELSA_temp10_1_landCHELSA_temp10_2_landCHELSA_temp10_3_landCHELSA_temp10_4_landCHELSA_temp10_5_landCHELSA_temp10_6_landCHELSA_temp10_7_landCHELSA_temp10_8_landCHELSA_temp10_9_landCHELSA_temp10_10_landCHELSA_temp10_11_landCHELSA_temp10_12_landCHELSA_tmin10_1_landCHELSA_tmin10_2_landCHELSA_tmin10_3_landCHELSA_tmin10_4_landCHELSA_tmin10_5_landCHELSA_tmin10_6_landCHELSA_tmin10_7_landCHELSA_tmin10_8_landCHELSA_tmin10_9_landCHELSA_tmin10_10_landCHELSA_tmin10_11_landCHELSA_tmin10_12_landCHELSA_tmax10_1_landCHELSA_tmax10_2_landCHELSA_tmax10_3_landCHELSA_tmax10_4_landCHELSA_tmax10_5_landCHELSA_tmax10_6_landCHELSA_tmax10_7_landCHELSA_tmax10_8_landCHELSA_tmax10_9_landCHELSA_tmax10_10_landCHELSA_tmax10_11_landCHELSA_tmax10_12_landCHELSA_bio10_1_landCHELSA_bio10_2_landCHELSA_bio10_3_landCHELSA_bio10_4_landCHELSA_bio10_5_landCHELSA_bio10_6_landCHELSA_bio10_7_landCHELSA_bio10_8_landCHELSA_bio10_9_landCHELSA_bio10_10_landCHELSA_bio10_11_landCHELSA_bio10_12_landCHELSA_bio10_13_landCHELSA_bio10_14_landCHELSA_bio10_15_landCHELSA_bio10_16_landCHELSA_bio10_17_landCHELSA_bio10_18_landCHELSA_bio10_19_land
DOI: 10.5061/dryad.6107210
title: Data from: Functional MRI in the Nile crocodile: a new avenue for evolutionary neurobiology

description: Crocodilians are important for understanding the evolutionary history of
 amniote neural systems as they are the nearest extant relatives of modern
 birds and share a stem amniote ancestor with mammals. Although the
 crocodilian brain has been investigated anatomically, functional studies
 are rare. Here we employed fMRI, never tested in poikilotherms, to
 investigate crocodilian telencephalic sensory processing. Juvenile
 Crocodylus niloticus were placed in a 7T MRI scanner to record BOLD signal
 changes during presentation of visual as well as auditory stimuli. Visual
 stimulation increased BOLD signals in rostral to mid-caudal portions of
 the dorso-lateral anterior dorsal ventricular ridge (ADVR). Simple
 auditory stimuli led to signal increase in the rostromedial and
 caudocentral ADVR. These activation patterns are in line with previously
 described projection fields of diencephalic sensory fibers. Furthermore,
 complex auditory stimuli activated additional regions of the caudomedial
 ADVR. The recruitment of these additional, presumably higher-order,
 sensory areas reflect observations made in birds and mammals. Our results
 indicate that structural and functional aspects of sensory processing have
 been likely conserved during the evolution of sauropsids. In addition, our
 study shows that fMRI can be utilized to investigate neural processing in
 poikilotherms, providing a new avenue for neurobiological research in
 these critical species.
description: raw_crocodile_fMRI_datafMRI data were acquired from 5 mildly sedated Nile crocodiles. Two different stimuli, auditory, and light were presented to the animals and brain response was investigated using GLM analysis.raw_Crocodile_fMRI _data.zip
DOI: 10.35079/hbm966.nvlv.885
title: Visium (no probes) data from the ovary (left) of a 19-year-old white female
DOI: 10.5061/dryad.v5s0j
title: Data from: Estimation of woody and herbaceous leaf area index in Sub-Saharan Africa using MODIS data

description: Savannas are widespread global biomes covering ~20% of terrestrial
 ecosystems on all continents except Antarctica. These ecosystems play a
 critical role in regulating terrestrial carbon cycle, ecosystem
 productivity, and the hydrological cycle and contribute to human
 livelihoods and biodiversity conservation. Despite the importance of
 savannas in ecosystem processes and human well-being, the presence of
 mixed woody and herbaceous components at scales much fin-er than most
 medium and coarse resolution satellite imagery poses significant
 challenges to their effective representation in remote sensing and
 modeling of vegetation dynamics. Although pre-vious studies have attempted
 to separate woody and herbaceous components, the focus on greenness
 indices and fractional cover provides little insight into spatio-temporal
 variability in woody and herbaceous vegetation structure, in particular,
 leaf area index (LAI). This paper pre-sents a method to partition 1km
 spatial resolution Moderate Resolution Imaging Spectroradiome-ter (MODIS)
 aggregate green leaf area index (LAIA) from 2003-2015, into separate woody
 (LAIW) and herbaceous (LAIH) constituents in both drought seasonal
 savannas and moist tropical forests of Sub-Saharan Africa (SSA). In our
 analysis, we use an allometric relationship describing the variation in
 peak within-canopy woody LAI of dominant tree species (LAIWpinc) across
 gradi-ents in mean annual precipitation (MAP), coupled with independent
 estimates of woody canopy cover (τw), to constrain seasonally changing
 LAIW. We present the LAI partitioning approach and highlight the broad
 spatial and temporal patterns of woody and herbaceous LAI across SSA. The
 long-term average 8-day phenologies of woody and herbaceous LAI (averaged
 across 2003-2015) are available for evaluation, research and application
 purposes.
description: MCD15A2.2003_2015.Africa.V02.Animation.gifData S2: LAI animation for years 2003 to 2015 contains aggregate, woody and partitioned LAI mosaicked for Sub-Saharan Africa, presented in gif format. The animation shows the estimates of aggregate LAI and partitioned woody and herbaceous LAI estimates for each 8-day interval during the entire 13-year time-period, Filename: MCD15A2.2003_2015.Africa.V02.Animation.gif.zip. An online version of the animation can be accessed here: https://globalmonitoring.sdstate.edu/content/modis-lai-partitioning.Average Aggregate Leaf Area IndexMODIS Aggregate ("total") Leaf Area Index for sub-Saharan AfricaMCD15A2.2003_15.Africa.V02.LAIA.Climatologies.nc.zipWoody Leaf Area Index8-day Average Partitioned woody leaf Area Index for sub-Saharan Africa for years 2003-2015MCD15A2.2003_15.Africa.V02.LAIW.Climatologies.nc.zipHerbaceous Leaf Area Index8-day average partitioned herbaceous leaf Area Index for sub-Saharan Africa for years 2003-2015MCD15A2.2003_15.Africa.V02.LAIH.Climatologies.nc.zipFiles MetadataMetadata and R-script for processing the filesKahiuMN.HananNP_JGR_10.1002-2017JG004105.txt
DOI: 10.34740/kaggle/ds/8392825
title: Metal milling anomaly dataset
DOI: 10.15468/dl.sxq6z8
title: Occurrence Download

description: A dataset containing 601 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bursera linanoe"
 ]
}

 The dataset includes 601 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000432-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.35079/hbm948.wvkr.975
title: Visium (no probes) data from the ovary (left) of a 19-year-old white female
DOI: 10.5061/dryad.p6g8048
title: Data from: The arrangement of lateral veins along the midvein of leaves is not related to leaf phyllotaxis

description: Positions of leaves along a stem usually adhere to a genetically
 determined, species-specific pattern known as a leaf phyllotaxis. We
 investigated whether the arrangement of lateral secondary veins along
 primary midveins adhered to a species-specific pattern that resembled an
 alternate or opposite phyllotaxis. We analyzed the venation of temperate
 dicotyledonous species from different taxonomic groups and chose 18 woody
 and 12 herbaceous species that have reticulated leaf venation. The
 arrangement of the lateral veins was neither alternate nor opposite for
 any of the species. Lateral vein arrangements were instead mixtures of
 symmetric and asymmetric patterns. Our results show that lateral vein
 arrangements are related neither to stem-level leaf phyllotaxis (alternate
 vs. opposite) nor to life form (woody vs. herbaceous). Our results are
 therefore generally consistent with the canalization hypothesis that the
 locations of lateral veins are not completely specified genetically prior
 to leaf formation.
description: Coordinates (Excel and
 CSV)Measured
 coordinates.Coordinates.zipScanned raw imagesScanned raw images, 400dpiScanned images.zipImageJ analysis filesOpen these files with ImageJImageJ analysis.7z
DOI: 10.35079/hbm724.pctq.959
title: Visium (no probes) data from the ovary (left) of a 19-year-old white female
DOI: 10.5061/dryad.gr487
title: Data from: Neural tuning functions underlie both generalization and interference

description: In sports, the role of backswing is considered critical for generating a
 good shot, even though it plays no direct role in hitting the ball. We
 recently demonstrated the scientific basis of this phenomenon by showing
 that immediate past movement affects the learning and recall of motor
 memories. This effect occurred regardless of whether the past contextual
 movement was performed actively, passively, or shown visually. In force
 field studies, it has been shown that motor memories generalize locally
 and that the level of compensation decays as a function of movement angle
 away from the trained movement. Here we examine if the contextual effect
 of past movement exhibits similar patterns of generalization and whether
 it can explain behavior seen in interference studies. Using a single
 force-field learning task, the directional tuning curves of both the prior
 contextual movement and the subsequent force field adaptive movements were
 measured. The adaptation movement direction showed strong directional
 tuning, decaying to zero by 90° relative to the training direction. The
 contextual movement direction exhibited a similar directional tuning,
 although the effect was always above 60%. We then investigated the
 directional tuning of the passive contextual movement using interference
 tasks, where the contextual movements that uniquely specified the force
 field direction were separated by ±15° or ±45°. Both groups showed a
 pronounced tuning effect, which could be well explained by the directional
 tuning functions for single force fields. Our results show that contextual
 effect of past movement influences predictive force compensation, even
 when adaptation does not require contextual information. However, when
 such past movement contextual information is crucial to the task, such as
 in an interference study, it plays a strong role in motor memory learning
 and recall. This work demonstrates that similar tuning responses underlie
 both generalization of movement direction during dynamic learning and
 contextual movements in both single force field and interference tasks.
description: PlosOneTuning_MatlabCodeMatlab example codeRANDPROBEPASGEN_P5RANDPROBEPASGEN_P6RANDPROBEPASGEN_P4RANDPROBEPASGEN_P3RANDPROBEPASGEN_P2RANDPROBEPASGEN_P1RANDPROBEPASGEN15_P6RANDPROBEPASGEN15_P5RANDPROBEPASGEN15_P4RANDPROBEPASGEN15_P3RANDPROBEPASGEN15_P2RANDPROBEPASGEN15_P1RANDSTATICPASGEN45_P4RANDSTATICPASGEN45_P8RANDSTATICPASGEN45_P7RANDSTATICPASGEN45_P6RANDSTATICPASGEN45_P5RANDSTATICPASGEN45_P3RANDSTATICPASGEN45_P2RANDSTATICPASGEN45_P1READ_ME
DOI: 10.35079/hbm735.tfpc.988
title: Visium (no probes) data from the ovary (left) of a 19-year-old white female
DOI: 10.5061/dryad.pb899
title: Data from: Maximizing negative correlations in resting-state functional connectivity MRI by time-lag

description: This paper aims to better understand the physiological meaning of negative
 correlations in resting state functional connectivity MRI (r-fcMRI). The
 correlations between anatomy-based brain regions of 18 healthy humans were
 calculated and analyzed with and without a correction for global signal
 and with and without spatial smoothing. In addition, correlations between
 anatomy-based brain regions of 18 naïve anesthetized rats were calculated
 and compared to the human data. T-statistics were used to differentiate
 between positive and negative connections. The application of spatial
 smoothing and global signal correction increased the number of significant
 positive connections but their effect on negative connections was complex.
 Positive connections were mainly observed between cortical structures
 while most negative connections were observed between cortical and
 non-cortical structures with almost no negative connections between
 non-cortical structures. In both human and rats, negative connections were
 never observed between bilateral homologous regions. The main difference
 between positive and negative connections in both the human and rat data
 was that positive connections became less significant with time-lags,
 while negative connections became more significant with time-lag. This
 effect was evident in all four types of analyses (with and without global
 signal correction and spatial smoothing) but was most significant in the
 analysis with no correction for the global signal. We hypothesize that the
 valence of r-fcMRI connectivity reflects the relative contributions of
 cerebral blood volume (CBV) and flow (CBF) to the BOLD signal and that
 these relative contributions are location-specific. If cerebral
 circulation is primarily regulated by CBF in one region and by CBV in
 another, a functional connection between these regions can manifest as an
 r-fcMRI negative and time-delayed correlation. Similarly, negative
 correlations could result from spatially inhomogeneous responses of rCBV
 or rCBF alone. Consequently, neuronal regulation of brain circulation may
 be deduced from the valence of r-fcMRI connectivity.
description: rat1_aBruker "2dseq"
 format for rat1_a2dseqrat1_b2dseqrat1_c2dseqRat2_a2dseqRat2_b2dseqRat2_c2dseqRat3_a2dseqRat3_b2dseqRat3_c2dseqRat4_a2dseqRat4_b2dseqRat4_c2dseqRat5_a2dseqRat5_b2dseqRat5_c2dseqRat6_a2dseqRat6_b2dseqRat6_c2dseqRat7_a2dseqRat7_b2dseqRat7_c2dseqRat8_a2dseqRat8_b2dseqRat8_c2dseqRat9_a2dseqRat9_b2dseqRat9_c2dseqRat10_a2dseqRat10_b2dseqRat10_c2dseqRat11_a2dseqRat11_b2dseqRat11_c2dseqRat12_a2dseqRat12_b2dseqRat12_c2dseqRat13_a2dseqRat13_b2dseqRat13_c2dseqRat14_a2dseq.zipRat14_b2dseq.zipRat14_c2dseq.zipRat15_a2dseq.zipRat15_b2dseq.zipRat15_c2dseq.zipRat16_a2dseq.zipRat16_b2dseq.zipRat16_c2dseq.zipData format
DOI: 10.5061/dryad.41dh5
title: Data from: Neurocranial anatomy of an enigmatic Early Devonian fish sheds light on early osteichthyan evolution

description: The skull of ‘Ligulalepis’ from the Early Devonian of Australia
 (AM-F101607) has significantly expanded our knowledge of early
 osteichthyan anatomy, but its phylogenetic position has remained
 uncertain. We herein describe a second skull of ‘Ligulalepis’ and present
 micro-CT data on both specimens to reveal novel anatomical features,
 including cranial endocasts. Several features previously considered to
 link ‘Ligulalepis’ with actinopterygians are now considered generalized
 osteichthyan characters or of uncertain polarity. The presence of a
 lateral cranial canal is shown to be variable in its development between
 specimens. Other notable new features include the presence of a pineal
 foramen, the some detail of skull roof sutures, the shape of the nasal
 capsules, a placoderm-like hypophysial vein, and a chondrichthyan-like
 labyrinth system. New phylogenetic analyses place ‘Ligulalepis’ as a stem
 osteichthyan, specifically as the sister taxon to ‘psarolepids’ plus crown
 osteichthyans. The precise position of ‘psarolepids’ differs between
 parsimony and Bayesian analyses.
description: SI1_Ligulalepis_AMF101607_slicesSI2_Ligulalepis_ANUv3628_slicesLig_ANUv3628_bmp.zipSI3: Files for phylogenetic analysisSI3: Files for phylogenetic analysisphylo_files.zipMimics files LigulalepisMimics files_Ligulalepis.zip
DOI: 10.35079/hbm368.czvz.524
title: Visium (no probes) data from the ovary (left) of a 19-year-old white female
DOI: 10.35079/hbm887.nmqs.953
title: Visium (no probes) data from the ovary (left) of a 19-year-old white female