cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3674848_d10.v1
title: Additional file 6: of Genetic detection of peste des petits ruminants virus under field conditions: a step forward towards disease eradication

description: ESE software file in notepad format generated from Detection of PPRV in clinical samples collected in outbreaks. Again in positive samples, the value of amplification signal in the form of mVolts increased with the passage of time during exponential phase until a platue phase is reached with no more increase in signal. (TXT 5 kb)
DOI: 10.6084/m9.figshare.c.3674848_d9
title: Additional file 7: of Genetic detection of peste des petits ruminants virus under field conditions: a step forward towards disease eradication

description: RT-LAMP based detection of serial dilutions of virus supernatant. The graph was generated in “GraphPad Prism software” expressing increasing serial dilution of PPRV culture supernatant along x-axis and corresponding time of detection along y-axis. The RT-LAMP was able to detect up to 10−4TCID50/ml within 60 min. (TXT 143 bytes)
DOI: 10.6084/m9.figshare.c.3674848_d9.v1
title: Additional file 7: of Genetic detection of peste des petits ruminants virus under field conditions: a step forward towards disease eradication

description: RT-LAMP based detection of serial dilutions of virus supernatant. The graph was generated in “GraphPad Prism software” expressing increasing serial dilution of PPRV culture supernatant along x-axis and corresponding time of detection along y-axis. The RT-LAMP was able to detect up to 10−4TCID50/ml within 60 min. (TXT 143 bytes)
DOI: 10.6084/m9.figshare.c.3674848_d7.v1
title: Additional file 5: of Genetic detection of peste des petits ruminants virus under field conditions: a step forward towards disease eradication

description: RT-qPCR in goat. File includes information on amplification of PPRV from experimentally infected goat from 2 to 14-dpi. (RTF 3678 kb)
DOI: 10.6084/m9.figshare.c.3674848_d7
title: Additional file 5: of Genetic detection of peste des petits ruminants virus under field conditions: a step forward towards disease eradication

description: RT-qPCR in goat. File includes information on amplification of PPRV from experimentally infected goat from 2 to 14-dpi. (RTF 3678 kb)
DOI: 10.6084/m9.figshare.c.3674848_d6.v1
title: Additional file 1: of Genetic detection of peste des petits ruminants virus under field conditions: a step forward towards disease eradication

description: Detection limit of N-gene based RT-LAMP assay. Sheet 1; The excel file includes data as values of millivolts (mV) against specified time obtained from 10-fold Serial dilutions of fluid supernatant taken from cultured PPRV in CHS-20 cells harvested at appearance of 80% cytopathic effects. Sheet 2; The test was able to detect dilution up to 10â  4 within 60Â min. Sheet 3; includes data generated from real-time RT-PCR by amplifying 10-fold serial dilutions of known plasmid concentrations. Sheet 4; data generated in real-time RT-PCR based detection of PPRV in clinical samples collected in field outbreaks. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3674848_d6
title: Additional file 1: of Genetic detection of peste des petits ruminants virus under field conditions: a step forward towards disease eradication

description: Detection limit of N-gene based RT-LAMP assay. Sheet 1; The excel file includes data as values of millivolts (mV) against specified time obtained from 10-fold Serial dilutions of fluid supernatant taken from cultured PPRV in CHS-20 cells harvested at appearance of 80% cytopathic effects. Sheet 2; The test was able to detect dilution up to 10â  4 within 60Â min. Sheet 3; includes data generated from real-time RT-PCR by amplifying 10-fold serial dilutions of known plasmid concentrations. Sheet 4; data generated in real-time RT-PCR based detection of PPRV in clinical samples collected in field outbreaks. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3674743_d5
title: MOESM4 of Detection and validation of structural variations in bovine whole-genome sequence data

description: Additional file 2: Table S1. Sample animals with sequence coverage and SRA accession number. This file contains for each sample international ID, breed, sequencing coverage and SRA accession number.
DOI: 10.6084/m9.figshare.c.3674779_d2
title: Additional file 2: Table S10. of Integrated genome-wide analysis of expression quantitative trait loci aids interpretation of genomic association studies

description: GWAS-associated cis-eQTLs and trans-eQTLs, that overlap with the NHGRI GWAS catalog (downloaded on 5 June 2016, filtered by association P  80% R2 of lead eQTL. Table S10b. Overlaps with all significant eQTLs. (XLSX 1541 kb)
DOI: 10.6084/m9.figshare.c.3674779_d2.v1
title: Additional file 2: Table S10. of Integrated genome-wide analysis of expression quantitative trait loci aids interpretation of genomic association studies

description: GWAS-associated cis-eQTLs and trans-eQTLs, that overlap with the NHGRI GWAS catalog (downloaded on 5 June 2016, filtered by association P  80% R2 of lead eQTL. Table S10b. Overlaps with all significant eQTLs. (XLSX 1541 kb)
DOI: 10.6084/m9.figshare.c.3674785_d1.v1
title: Additional file 1: of Ultra-sensitive chemiluminescence imaging DNA hybridization method in the detection of mosquito-borne viruses and parasites

description: Figure S1. Determination of the specificity of the MBVs detection by detection of non-MBVs. A panel of non-MBVs were detected by this MBVs detection strategy to determine the specificity. There were no positive results (i.e. detection of these non-MBVs). YFV and EEEV were used as positive references. (XML 7 kb)
DOI: 10.6084/m9.figshare.c.3674785_d1
title: Additional file 1: of Ultra-sensitive chemiluminescence imaging DNA hybridization method in the detection of mosquito-borne viruses and parasites

description: Figure S1. Determination of the specificity of the MBVs detection by detection of non-MBVs. A panel of non-MBVs were detected by this MBVs detection strategy to determine the specificity. There were no positive results (i.e. detection of these non-MBVs). YFV and EEEV were used as positive references. (XML 7 kb)
DOI: 10.15468/dl.q3dkf8
title: Occurrence Download

description: A dataset containing 10041 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phalacrocorax capillatus (Temminck & Schlegel, 1849)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10041 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035581-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3674743_d3.v1
title: MOESM3 of Detection and validation of structural variations in bovine whole-genome sequence data

description: Additional file 4: Table S6. Results for the validated SV sets. This file contains results of three validated SV sets.
DOI: 10.6084/m9.figshare.c.3674743_d2.v1
title: MOESM5 of Detection and validation of structural variations in bovine whole-genome sequence data

description: Additional file 5: Table S7. RefSeq genes that overlap with SV. This file contains the RefSeq genes that overlapped with the validated SV set and the length of the overlap and percentage covered for those genes.
DOI: 10.6084/m9.figshare.c.3674743_d3
title: MOESM3 of Detection and validation of structural variations in bovine whole-genome sequence data

description: Additional file 4: Table S6. Results for the validated SV sets. This file contains results of three validated SV sets.
DOI: 10.6084/m9.figshare.c.3674743_d2
title: MOESM5 of Detection and validation of structural variations in bovine whole-genome sequence data

description: Additional file 5: Table S7. RefSeq genes that overlap with SV. This file contains the RefSeq genes that overlapped with the validated SV set and the length of the overlap and percentage covered for those genes.
DOI: 10.6084/m9.figshare.c.3674749_d2
title: Additional file 1: of Pigment Epithelium-Derived Factor (PEDF) mediates cartilage matrix loss in an age-dependent manner under inflammatory conditions

description: Datasets. Datasets used for quantification. In figures where data are quantified, the datasets are included in tabs of this Excel file labeled by figure number or data described. The “Fig. 2” tab includes cycle threshold numbers for the qRT-PCR data as well as the calculated concentrations of MMP-1, MMP-3, MMP-13 and PEDF from NHAC transduced with LV-GFP or LV-PEDF shown in Fig. 2. The “Fig. 4” tab shows the values for percent surface area loss as determined from the Toluidine Blue images of metatarsal bones. The “Fig. 5” tab shows the values for percent positive MMP-13 area as determined from the MMP-13 images of metatarsal bones. The “Fig. 6” tab shows the values for the percent area loss as determined from the Safranin O/Fast Green/Hematoxylin images of MIA-injected knees. The “Cell Number” tab shows the values for the cell counts as determined from the DAPI and bright field images of MIA-injected knees as referenced in the manuscript. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3674749_d2.v1
title: Additional file 1: of Pigment Epithelium-Derived Factor (PEDF) mediates cartilage matrix loss in an age-dependent manner under inflammatory conditions

description: Datasets. Datasets used for quantification. In figures where data are quantified, the datasets are included in tabs of this Excel file labeled by figure number or data described. The “Fig. 2” tab includes cycle threshold numbers for the qRT-PCR data as well as the calculated concentrations of MMP-1, MMP-3, MMP-13 and PEDF from NHAC transduced with LV-GFP or LV-PEDF shown in Fig. 2. The “Fig. 4” tab shows the values for percent surface area loss as determined from the Toluidine Blue images of metatarsal bones. The “Fig. 5” tab shows the values for percent positive MMP-13 area as determined from the MMP-13 images of metatarsal bones. The “Fig. 6” tab shows the values for the percent area loss as determined from the Safranin O/Fast Green/Hematoxylin images of MIA-injected knees. The “Cell Number” tab shows the values for the cell counts as determined from the DAPI and bright field images of MIA-injected knees as referenced in the manuscript. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3672718_d6
title: Additional file 7: of Prognostic and therapeutic value of disruptor of telomeric silencing-1-like (DOT1L) expression in patients with ovarian cancer

description: Possible target genes of DOT1L analyzed from DOT1L ChIP-seq. (XLSX 854 kb)
DOI: 10.6084/m9.figshare.c.3672712_d4
title: Additional file 2: Table S2. of Optimizing mesoderm progenitor selection and three-dimensional microniche culture allows highly efficient endothelial differentiation and ischemic tissue repair from human pluripotent stem cells

description: Excel tables for genes significantly upregulated in MESP1+ cells compared with undifferentiated hESCs and genes significantly downregulated in MESP1â   cells compared with undifferentiated hESCs. (XLSX 53Â kb)
DOI: 10.6084/m9.figshare.c.3672712_d4.v1
title: Additional file 2: Table S2. of Optimizing mesoderm progenitor selection and three-dimensional microniche culture allows highly efficient endothelial differentiation and ischemic tissue repair from human pluripotent stem cells

description: Excel tables for genes significantly upregulated in MESP1+ cells compared with undifferentiated hESCs and genes significantly downregulated in MESP1â   cells compared with undifferentiated hESCs. (XLSX 53Â kb)
DOI: 10.15468/dl.9g6c87
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carbo capillatus Temminck & Schlegel, 1850",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035582-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3671812_d8
title: Additional file 6:Table S1. of Novel roles of DC-SIGNR in colon cancer cell adhesion, migration, invasion, and liver metastasis

description: The table lists the gene expression profiling data analyzed by human gene expression array. (XLS 4041 kb)
DOI: 10.6084/m9.figshare.c.3671812_d8.v1
title: Additional file 6:Table S1. of Novel roles of DC-SIGNR in colon cancer cell adhesion, migration, invasion, and liver metastasis

description: The table lists the gene expression profiling data analyzed by human gene expression array. (XLS 4041 kb)
DOI: 10.6084/m9.figshare.c.3671077_d4.v1
title: Additional file 3: of Biology of high single doses of IORT: RBE, 5 Râ  s, and other biological aspects

description: DSB and SLD repair data. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3671077_d4
title: Additional file 3: of Biology of high single doses of IORT: RBE, 5 Râ  s, and other biological aspects

description: DSB and SLD repair data. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3671077_d1.v1
title: Additional file 4: of Biology of high single doses of IORT: RBE, 5 Râ  s, and other biological aspects

description: RBE and gH2AX data. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.c.3671077_d1
title: Additional file 4: of Biology of high single doses of IORT: RBE, 5 Râ  s, and other biological aspects

description: RBE and gH2AX data. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.c.3670105_d1.v1
title: Additional file 1: of Dual RNA-seq reveals viral infections in asthmatic children without respiratory illness which are associated with changes in the airway transcriptome

description: Table S1. Clinical characteristics of subjects. Table S2. Gene count table for 48 RNA-seq nasal brushing subjects from GALA cohort. Table S3. Virus-High DESeq differential expression analysis. Table S4. DAVID enrichment for Virus High DEGs. Table S5. Gene count table for HRV in vitro stimulation dataset. Table S6. HRV in vitro DEGs. Table S7. Virus Low Differential Expression Analysis. Table S8. WGCNA gene2module. Table S9. DAVId for modules. Table S10. immune cell enrichments for modules. (XLS 18739 kb)
DOI: 10.6084/m9.figshare.c.3670105_d1
title: Additional file 1: of Dual RNA-seq reveals viral infections in asthmatic children without respiratory illness which are associated with changes in the airway transcriptome

description: Table S1. Clinical characteristics of subjects. Table S2. Gene count table for 48 RNA-seq nasal brushing subjects from GALA cohort. Table S3. Virus-High DESeq differential expression analysis. Table S4. DAVID enrichment for Virus High DEGs. Table S5. Gene count table for HRV in vitro stimulation dataset. Table S6. HRV in vitro DEGs. Table S7. Virus Low Differential Expression Analysis. Table S8. WGCNA gene2module. Table S9. DAVId for modules. Table S10. immune cell enrichments for modules. (XLS 18739 kb)
DOI: 10.15468/dl.s5b78z
title: Occurrence Download

description: A dataset containing 668 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Uria aalge (Pontoppidan, 1763)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 668 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035583-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3669937_d8.v1
title: Additional file 4: of Lineage-specific duplication of amphioxus retinoic acid degrading enzymes (CYP26) resulted in sub-functionalization of patterning and homeostatic roles

description: Conserved retinoic acid response elements (RAREs) found in the Branchiostoma lanceolatum, Branchiostoma belcheri, and Branchiostoma floridae CYP26 clusters. B. lanceolatum RAREs recognized and bound by the B. lanceolatum RAR/RXR heterodimer in vitro (Fig.Â 8) are indicated in black, RAREs that do not associate with the B. lanceolatum RAR/RXR heterodimer in vitro are shown in grey. The in vitro validated B. lanceolatum RAREs composed of two direct repeats (DRs) and separated by a 5 nucleotide spacer (i.e. the validated B. lanceolatum DR5-type RAREs) were used to calculate a consensus B. lanceolatum DR5 RARE by multiple expectation maximization algorithm for motif elicitation (MEME) analysis. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.c.3669982_d1.v1
title: Additional file 2 of Variational inference for rare variant detection in deep, heterogeneous next-generation sequencing data

description: Identified variants and corresponding non-reference allele frequencies in gene MTH1 on Chromosome 4. A blank cell indicates that the position of that time point is not called significantly different than G7. The positions highlighted as blue were also identified by Kvitek, 2013. The other 81 positions are novel identified variants in 8 timepoints. (XLSX 18.4 kb)
DOI: 10.6084/m9.figshare.c.3669982_d1
title: Additional file 2 of Variational inference for rare variant detection in deep, heterogeneous next-generation sequencing data

description: Identified variants and corresponding non-reference allele frequencies in gene MTH1 on Chromosome 4. A blank cell indicates that the position of that time point is not called significantly different than G7. The positions highlighted as blue were also identified by Kvitek, 2013. The other 81 positions are novel identified variants in 8 timepoints. (XLSX 18.4 kb)
DOI: 10.6084/m9.figshare.c.3669937_d8
title: Additional file 4: of Lineage-specific duplication of amphioxus retinoic acid degrading enzymes (CYP26) resulted in sub-functionalization of patterning and homeostatic roles

description: Conserved retinoic acid response elements (RAREs) found in the Branchiostoma lanceolatum, Branchiostoma belcheri, and Branchiostoma floridae CYP26 clusters. B. lanceolatum RAREs recognized and bound by the B. lanceolatum RAR/RXR heterodimer in vitro (Fig.Â 8) are indicated in black, RAREs that do not associate with the B. lanceolatum RAR/RXR heterodimer in vitro are shown in grey. The in vitro validated B. lanceolatum RAREs composed of two direct repeats (DRs) and separated by a 5 nucleotide spacer (i.e. the validated B. lanceolatum DR5-type RAREs) were used to calculate a consensus B. lanceolatum DR5 RARE by multiple expectation maximization algorithm for motif elicitation (MEME) analysis. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.c.3669937_d6.v1
title: Additional file 6: of Lineage-specific duplication of amphioxus retinoic acid degrading enzymes (CYP26) resulted in sub-functionalization of patterning and homeostatic roles

description: DNA alignment used for comparative dating analyses of the CYP26 subfamily. (NEX 135 kb)
DOI: 10.6084/m9.figshare.c.3669937_d6
title: Additional file 6: of Lineage-specific duplication of amphioxus retinoic acid degrading enzymes (CYP26) resulted in sub-functionalization of patterning and homeostatic roles

description: DNA alignment used for comparative dating analyses of the CYP26 subfamily. (NEX 135 kb)
DOI: 10.6084/m9.figshare.c.3669937_d3.v1
title: Additional file 7: of Lineage-specific duplication of amphioxus retinoic acid degrading enzymes (CYP26) resulted in sub-functionalization of patterning and homeostatic roles

description: Species names, corresponding genome access, and scaffold information related to the sequences used as input for the in silico identification of conserved putative retinoic acid response elements (RAREs). (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3669937_d4.v1
title: Additional file 5: of Lineage-specific duplication of amphioxus retinoic acid degrading enzymes (CYP26) resulted in sub-functionalization of patterning and homeostatic roles

description: Amino acid alignment used for phylogenetic tree reconstruction analyses of the CYP26 subfamily. (NEX 46 kb)
DOI: 10.6084/m9.figshare.c.3669937_d4
title: Additional file 5: of Lineage-specific duplication of amphioxus retinoic acid degrading enzymes (CYP26) resulted in sub-functionalization of patterning and homeostatic roles

description: Amino acid alignment used for phylogenetic tree reconstruction analyses of the CYP26 subfamily. (NEX 46 kb)
DOI: 10.6084/m9.figshare.c.3669937_d2
title: Additional file 8: of Lineage-specific duplication of amphioxus retinoic acid degrading enzymes (CYP26) resulted in sub-functionalization of patterning and homeostatic roles

description: Sequences of the oligonucleotides used as primers for quantitative real time PCR (qPCR) analyses of the indicated Branchiostoma lanceolatum genes. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3669937_d3
title: Additional file 7: of Lineage-specific duplication of amphioxus retinoic acid degrading enzymes (CYP26) resulted in sub-functionalization of patterning and homeostatic roles

description: Species names, corresponding genome access, and scaffold information related to the sequences used as input for the in silico identification of conserved putative retinoic acid response elements (RAREs). (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3669937_d2.v1
title: Additional file 8: of Lineage-specific duplication of amphioxus retinoic acid degrading enzymes (CYP26) resulted in sub-functionalization of patterning and homeostatic roles

description: Sequences of the oligonucleotides used as primers for quantitative real time PCR (qPCR) analyses of the indicated Branchiostoma lanceolatum genes. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3669937_d1
title: Additional file 1: of Lineage-specific duplication of amphioxus retinoic acid degrading enzymes (CYP26) resulted in sub-functionalization of patterning and homeostatic roles

description: Accession numbers of the CYP26 and CYP51 subfamily sequences used to calculate the phylogenetic trees and to carry out the dating analyses. Species names and database information are provided for each sequence. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3669937_d1.v1
title: Additional file 1: of Lineage-specific duplication of amphioxus retinoic acid degrading enzymes (CYP26) resulted in sub-functionalization of patterning and homeostatic roles

description: Accession numbers of the CYP26 and CYP51 subfamily sequences used to calculate the phylogenetic trees and to carry out the dating analyses. Species names and database information are provided for each sequence. (XLSX 12 kb)
DOI: 10.15468/dl.7htkwk
title: Occurrence Download

description: A dataset containing 42699 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
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 }
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 "Geometry POLYGON ((125.8194 -32.41281, 126.7177 -32.41281, 126.7177 -31.5145, 125.8194 -31.5145, 125.8194 -32.41281))",
 "Year is less than 2025"
 ]
}

 The dataset includes 42699 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035584-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3668695_d17.v1
title: Additional file 9: Table S7. of Integrated genomics-based mapping reveals the genetics underlying maize flavonoid biosynthesis

description: Overview of the co-localization of QTLs identified across different environments or different populations. (XLS 29Â kb)
DOI: 10.6084/m9.figshare.c.3668695_d17
title: Additional file 9: Table S7. of Integrated genomics-based mapping reveals the genetics underlying maize flavonoid biosynthesis

description: Overview of the co-localization of QTLs identified across different environments or different populations. (XLS 29Â kb)
DOI: 10.6084/m9.figshare.c.3668803_d1.v1
title: Additional file 2: Table S2. of Transcriptomic response of wolf spider, Pardosa pseudoannulata, to transgenic rice expressing Bacillus thuringiensis Cry1Ab protein

description: Selected DEGs for qPCR and their primers. These genes were homologous to structural constituents of cuticle, chitin binding and chitin metabolic process. (XLS 55Â kb)