cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/r9b29tdkc8
title: Replication data for Heid and Stähler "Structural Gravity and the Gains from Trade under Imperfect Competition: Quantifying the Effects of the European Single Market"

description: This is the replication package for the results presented in the paper "Structural Gravity and the Gains from Trade under Imperfect Competition: Quantifying the Effects of the European Single Market" by Benedikt Heid and Frank Stähler, forthcoming in Economic Modelling.
DOI: 10.6084/m9.figshare.23036753.v2
title: nlr,mlr,plr,alc for diagnosis of malignant sts.xlsx

description: Raw data of NLR, MLR, PLR and ALC of soft tissue tumor cases.
DOI: 10.6084/m9.figshare.5719006.v1
title: Physiological response and productivity of safflower lines under water deficit and rehydration

description: ABSTRACT Water deficit is one of the major stresses affecting plant growth and productivity worldwide. Plants induce various morphological, physiological, biochemical and molecular changes to adapt to the changing environment. Safflower (Carthamus tinctorius L.), a potential oil producer, is highly adaptable to various environmental conditions, such as lack of rainfall and temperatures. The objective of this work was to study the physiological and production characteristics of six safflower lines in response to water deficit followed by rehydration. The experiment was conducted in a protected environment and consisted of 30 days of water deficit followed by 18 days of rehydration. A differential response in terms of photosynthetic pigments, electrolyte leakage, water potential, relative water content, grain yield, oil content, oil yield and water use efficiency was observed in the six lines under water stress. Lines IMA 04, IMA 10, IMA 14 showed physiological characteristics of drought tolerance, with IMA 14 and IMA 16 being the most productive after water deficit. IMA 02 and IMA 21 lines displayed intermediate characteristics of drought tolerance. It was concluded that the lines responded differently to water deficit stress, showing considerable genetic variation and influence to the environment.
DOI: 10.6084/m9.figshare.13301468.v2
title: Simulated_vs_Measured_POC_flux_TRIPLEX_HYDRA.xlsx

description: The comparisons of measured and simulated riverine POC flux by the TRIPLEX-HYDRA model.
DOI: 10.6084/m9.figshare.3565041.v1
title: Appendix A. A table of the locations of seed source populations.

description: A table of the locations of seed source populations.
DOI: 10.17632/dt7d7zjc9p
title: Eyes without a face: evolutionary drivers of eyespots in velvet ants (Hymenoptera: Dasymutilla).

description: In this study, we investigated the selective forces acting on the evolution of eyespots on velvet ants (Mutillidae: Dasymutilla). We tested whether eyespots in 80 species of velvet ants evolved in (i) forest dwelling species and/or in (ii) habitat generalist species using Generalized hidden Markov models.
DOI: 10.17632/r2gyg24frj
title: Data for: Industrial synthesis of ammonia

description: This dataset refers to the patented methods for producing ammonia.
Searches were carried out on the Orbit Intelligence platform (FamPat database). The complete keyword and classification codes list is available in the README file.
Ammonia is commonly produced via the Haber-Bosch process, based on the reaction between hydrogen and nitrogen, mixed in a 3:1 ratio, over iron (magnetite or wustite) or ruthenium catalysts at elevated temperatures (450 – 600° C) and pressures (100 – 250 bar).
3H2 + N2 = 2NH3
Other methods include photocatalytic, electrochemical,  photo-electrochemical, and chemical looping approaches.
DOI: 10.6084/m9.figshare.18393959.v1
title: Supplementary Material for: A Unique Case Report of Infant-Type Hemispheric Glioma (Gliosarcoma Subtype) with <b><i>TPR</i></b>-<b><i>NTRK1</i></b> Fusion Treated with Larotrectinib

description: Herein, we present a rare case of a nine-month-old boy diagnosed with infant-type hemispheric glioma (gliosarcoma subtype) at the left frontal lobe. Following subtotal resection, the patient started chemotherapy with the BABY POG protocol. We describe the clinical diagnosis, histological characteristics, radiological features, molecular aspects, and management of this tumor. A comprehensive molecular analysis on the tumor tissue showed a <i>TPR-NTRK1</i> gene fusion. The patient was treated with a TRK inhibitor, larotrectinib, and exhibited a stable disease with residual lesion following 8 months of target therapy. The present study is the first report of an infantile gliosarcoma harboring <i>NTRK1</i> rearrangement treated with larotrectinib.
DOI: 10.17632/9rghw56pnk
title: Published Journal of Studies in Islam and Psychology; No. 16

description: The journal is set to publish original articles on a wide range of issues including;

 The philosophy of psychology with a critical outlook from the perspective of Islam;
 The uses of psychology in the service of the Islamic society and its needs;
 The formation of psychology in the Islamic society;
 Psychological analysis of Islamic concepts in areas such as:
 1. Anthropology, such as: banned, impatience, hasty, captious, pious, faithful;
 2. Belief, such as: God, resurrection, Imamate, intercession, Paradise, Hell and ...;
 3. Value, such as: repentance, trust, self-esteem, mental relaxation, grief, fear;
 4. Practical instructions of Islam, such as: qisas (retaliation), prayers, inheritance, hajj, khums (one fifth);
 Study of psychological findings from Islamic perspective in terms of critique, confirmation and completion, alternative presentation, presentation of new theory;

To let individual researchers and libraries have access to the most recent research findings in the field, the journal allows open-access to its articles. This journal utilizes the Magiran and Noormags preservation systems to create a distributed archiving system for individual and libraries and to permit libraries stakeholders to create permanent archives of the journal.
DOI: 10.17632/jnwyr7jzrd
title: PyDigitizer – A Python module for digitizing 2D curves

description: The digitizing process consists of extracting a curve numerical coordinates from an explicit 
image. The paper describes the PyDigitizer module for digitizing 2D curves from images, 
created with the help of free and Open Source resources, using Python as a programming 
language and wx.Python as a graphical user interface toolkit. Digitizing is done manually, 
only for XY graphs type, by placing mouse points with left clicking over the curves in the 
image. After digitization, spline interpolation curves can be plotted over the image curves, 
their intersection points can be accurately calculated for specified X or Y values and the 
coordinates of the digitized points can be displayed in tabular form; moreover, regression 
digitized curves can be generated, the results can be exported to an Excel file or saved 
in a dataset to be restored later. 
It is also possible to open Excel files, with point coordinates of one or more curves,
to operate intersections for the X or Y axis. The Excel file layout is exemplified in the 
file 'Demo_Chart.xls'.
DOI: 10.6084/m9.figshare.24613869.v1
title: SAIL - Meteorological data

description: Quality-assured meteorological observations from hourly records made by Navy’s meteorological observers during the SAIL campaign January - May 2020 over the Atlantic Ocean. The file has the following structure:col 1: date (yyyy-mm-dd)col 2: time (HHMM) [local time]col 3: Latitude (DD° M.M)col 4: Latitude suffix (N or S)col 5: Longitude (DDD° M.M)col 6: Longitude suffix (E or W)col 7: QNH (Query Nautical Height, mbar)col 8: temperature - dry (ºC)col 9: temperature - wet (ºC)col 10: Dew point (ºC)col 11: Relative humidity (%)col 12: Water temperature - bucket (ºC)col 13: Water temperature - hull (ºC)col 14: True wind direction (degrees)col 15: True wind speed (knots)col 16:True wind force (beaufort scale)col 17: Wave direction (compass half-wind)col 18: Wave height (m)col 19: Visibility (qualitative code)col 20: Cloud cover (oktas)col 21: Precipitation (qualitative code)<br>
DOI: 10.17632/4nyfyjbr4z
title: Data for: Responses of marine phytoplankton communities to environmental changes: new insights from a niche classification scheme

description: A dataset that contains mean values of total chlorophyll a (iTChla), relative abundances of nine phytoplankton groups (iDino: dinoflagellates, iDiat: diatoms, iHapt_8: haptophytes_8, iHapt_6: haptophytes_6, iChlo: chlorophytes, iCryp: cryptophytes, iProc: Prochlorococcus, iSyne: Synechococcus, and iPras: prasinophytes), and three environmental factors (iTemp: temperature, Em: irradiance, and iNOx: nitrate) in the upper mixed layer of the South China Sea.
DOI: 10.6084/m9.figshare.16487907.v2
title: Magnetism and hematite data

description: The environmental magnetism and diffuse reflectance spectroscopy data from the eolian red clay sequence (~51-39 Ma) in the Altun Mountains of the northeastern Tibetan Plateau
DOI: 10.6084/m9.figshare.16695592.v2
title: Rat FOF Recordings During Dynamic Clicks Task

description: FOF recordings from 5 rats performing a dynamic evidence accumulation task. These recordings yielded 738 units from these 5 rats. Data was collected using unilateral electrode arrays (n=4) and bilateral tetrodes (n=1). Each rat has an accompanying behavioral dataset containing an average of 108,126 trials performing the dynamic clicks task. These trials were used to fit a previously described accumulation model to their behavior (Piet et al, 2018). The dynamic clicks task presents the animal with two streams of randomly-timed auditory clicks on the left and right side of a central fixation port. These left and right click trains are generated with at a high rate (38Hz) on one side and a low rate (2Hz) on the other. The underlying click rates alternate a rate of 1Hz and the rat is rewarded for correctly identifying the side generating the higher click rate at the end of the trial. To solve this task, rats learn to discount older evidence so that the most recently presented clicks have the greatest effect on the decision. This induces changes of mind throughout each trial, which we can predict with our behavioral model and relate to neural activity.<br>This dataset, along with the accompanying code (https://github.com/Brody-Lab/dynamic_ephys) can be used to regenerate all the results and figures in the manuscript titled Stable choice coding in FOF across model predicted changes of mind (Boyd-Meredith and Piet et al., under review; preprint here: https://www.biorxiv.org/content/10.1101/2021.05.13.444020v2).<br>Behavioral data:Each rat (H###) has behavioral data saved in a file titled data/H###.matThis contains a matlab struct called data with fields like:T - the duration of the trialleftbups - the timing of the left clicks relative to stimulus onset in each trialpokedR - boolean indicated whether the rat went to the rightward portsessid - a unique identifier for each sessiongenSwitchTimes - the timing of the state switches relative to the stimulus onset on that trial<br>Model fits:Each rat's accumulation model fits are saved in a file titled results/fit_analytical_H###.matThis contains a matlab struct with fields like:final - the best fit parameters to the accumulation modelparam_names - the names associated with each parameterauto_se - standard error derived from automatic differentiation in julia<br>Electrophysiology data:<br>Each cell has an associated file titled: data/phys/bin/phys_data_#####.matThis file contains an associated ratname and sessid as well as a struct array of length ntrials called array_data whose fields are things likestim_start - the timing (in seconds) of the stimulus start relative to the beginning of the trialspikes - the timing of the spikes on the trial<br>The easiest way to begin working with the data is to clone the accompanying git repository https://github.com/Brody-Lab/dynamic_ephys<br><br>
DOI: 10.6084/m9.figshare.28646498.v1
title: The gut microbiome of white-headed langurs under different community environments

description: The gut microbiome of white-headed langurs (<i>Trachypithecus leucocephalus</i>) under different community environments
DOI: 10.6084/m9.figshare.19499591.v1
title: patches and local annotations, slide 071, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.24624852.v1
title: Supplementary Material for: Accessory right hepatic artery pseudoaneurysm resulting in biliary obstruction

description: Introduction: Visceral pseudoaneurysms are prone to rupture and can cause mass effect on surrounding structures, with extrinsic compression on the biliary tree being a rare but challenging complication. Case Presentation: We report a case of a 48-year-old man with a history of alcohol excess who presented acutely unwell with jaundice. Imaging revealed a pseudoaneurysm of the accessory right hepatic artery extending into an adjacent pancreatic pseudocyst, leading to common bile duct compression. Successful management included pseudoaneurysm exclusion with a stent-graft and concurrent alleviation of the biliary obstruction. Conclusion: Managing pancreatic pseudocysts with biliary compression becomes complicated when an accompanying pseudoaneurysm is present, elevating the associated risk. In this case, stent-graft exclusion of the pseudoaneurysm was the chosen approach to preserve arterial flow with potential for long-term patency. Delayed pseudoaneurysm diagnosis underscores the importance of comprehensive assessment in complex presentations, such as jaundiced alcoholic patients, where the possibility of pancreatitis episodes necessitates evaluation of the visceral vasculature for pseudoaneurysms.
DOI: 10.6084/m9.figshare.13292498.v1
title: original date

description: Each patient’s spinal cord functions (ASIA score) and activities of daily living (ADL) (Barthel index) were assessed by multiple physicians before treatment, as well as one month, three months, six months, one year, two years, and three years after surgery<sup> </sup>. Subsequent average values were obtained for each assessment method.
DOI: 10.17632/ddbhv8dt3n
title: Integration of Game Elements in Biology Learning: A Constructivist Perspective

description: Research data on the Integration of Game Elements in Biology Learning: A Constructivist Perspective
DOI: 10.6084/m9.figshare.3482270.v4
title: Ebola (Full)

description: Dataset of tweets about West African Ebola virus epidemic which is the most widespread epidemic of Ebola virus disease. The epidemic began in Guinea in December 2013 and lasted for two years. World government agencies report more than 11, 295 deaths. The dataset were collected from July 29th 2014 to August 28th 2014 using “ebola” as a keyword.<br>In accordance with Twitter's Terms of Service, this file only provides identifiers of tweets in the dataset. In order to "hydrate" those tweet identifiers, or in other words, to collect the actual tweets, you suggest to use our Tweeset tool https://bitbucket.org/amjedbj/tweeset.<br>
DOI: 10.15468/dl.ncnyjp
title: Occurrence Download

description: A dataset containing 4226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Plemyria rubiginata (Denis & Schiffermüller), 1775"
 ]
}

 The dataset includes 4226 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009344-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.13302443.v1
title: Liver gene expression data

description: Raw data from gene expression analyses of liver tissue
DOI: 10.6084/m9.figshare.27214395.v4
title: Data, programming code and figure file for Homem-de-Carvalho et al. (2025): "A review and meta-analysis of host-plant selection by lepidopteran larvae: no evidence of diet breadth constraints on larval decision-making"

description: Information processing by herbivorous insects can impair the accuracy of decision-making during host-plant selection. Consequently, insects with a narrower diet breadth are expected to be more accurate decision-makers, as they cope with a smaller set of relevant stimuli. However, in groups in which larvae and adults have distinct ecological specializations (<i>e.g.</i>, Lepidoptera) it remains to be explored whether these constraints on adult female decision-making also occur at the larval stage. Here, we conducted a systematic review and a meta-analysis to assess the decision-making accuracy of lepidopteran larvae exposed to host-plant olfactory and visual cues. Our meta-analysis showed that caterpillars, irrespective of diet breadth, were consistently accurate in discriminating among their host plants through olfaction. Moreover, our review identified different scenarios in which larval vision plays an important role in host-plant selection, sometimes even as a priority over olfactory information. Our results highlight how caterpillars integrate different sensory modalities to accurately locate their host plants, and indicate that ecological constraints in host-plant selection may vary across insect life stages.
DOI: 10.17632/wvkhpsbbfs
title: RNA-Seq, NChip-Seq and RIP-Seq analysis of FUBP3 in T cells

description: The Far Upstream Element Binding Protein 3 (FUBP3) enhances HIV-1 transcription and regulates immune responses pathways in T cells:
FUBP3 (Far Upstream Element-Binding Protein 3) has emerged as a hit factor in HIV-1 transcription, yet its molecular function and mechanisms remained unexplored. In this study, we investigate the role of FUBP3 in HIV-1 transcriptional activation, focusing on its interactions with the viral transactivator protein Tat and TAR RNA. Using a combination of transcriptomic analyses, chromatin immunoprecipitation, and biochemical assays, we demonstrate that FUBP3 enhances HIV-1 transcription in a Tat-dependent manner. FUBP3 directly binds and stabilizes TAR RNA, exhibiting a strong preference for its secondary structure, which is essential for efficient Tat function. Knockdown of FUBP3 results in significant downregulation of HIV-1 transcription and alters the expression of numerous host genes involved in T cell activation and inflammation, underscoring its role in regulating immune responses. Our findings position FUBP3 as a key player in the HIV-1 lifecycle, enhancing our understanding of the interplay between viral and host factors. This study opens avenues for future research aimed at targeting FUBP3 for therapeutic intervention in HIV-1 infection, particularly in the context of latency and reactivation. By elucidating the multifaceted roles of FUBP3, we contribute valuable insights into its potential as a therapeutic target and its implications in oncogenic and inflammatory pathways.

RNA-Sequencing analysis of total RNA extracted from J-Lat 10.6, Jurkat and primary CD4+T cells upon FUBP3 depletion by shRNAmirs (shFUBP3 and shCD8B).
RIP-Seq analysis of FUBP3-IP using the EZ-Magna RIP Kit (Millipore, #17-701) in Jurkat-D6 cells.
Native ChIP-Seq (NChIP) analysis of RNAPII and FUBP3 in J-Lat 10.6 cells with TNFa stimulation or without stimulation (MOCK).
DOI: 10.6084/m9.figshare.22141154.v1
title: WingShapeBSA

description: Data and code for Pelletier et al 2023 (Genetics) <br> This is the static copy (with DOI) of the data and scripts associated with Pelletier. et al. (2023) Genetics (In Press). Complexities of recapitulating polygenic effects in natural populations: replication of genetic effects on wing shape in artificially selected and wild caught populations of <em>Drosophila melanogaster.</em> <br> <em>scripts and data are also available https://github.com/DworkinLab/WingShapeBSA</em> <br> <em>Sequence data has all been added to NCBI as part of </em> <em>https://www.ncbi.nlm.nih.gov/bioproject/PRJNA936488/</em> <br> <em>pre-print is currently available at</em> <br> <em>https://www.biorxiv.org/content/10.1101/2022.05.12.491649v2</em>
DOI: 10.17632/2b28sr4mm3
title: A data set for detecting videos three-dimensional (3D) regional duplication forgeries

description: This data set is used in evaluating small three-dimensional region forgery detection of videos
DOI: 10.17632/kvct6sjd4b
title: A new carbon compound specific (CSIA) method for the determination of stable isotopes of Perfluoroalkyl substances (PFAs)

description: Method for Linearity Correction of CSIA (Compound Specific Isotope Anlaysis) data is shown and explained in the following excel sheet.
DOI: 10.6084/m9.figshare.19948949.v2
title: Sleep factors in relation to metabolic-dysfunction associated fatty liver disease in middle-aged and elderly Chinese

description: <strong>Sleep factors in relation to metabolic-dysfunction associated fatty liver disease in middle-aged and elderly Chinese</strong>
DOI: 10.17632/hy7zjnshy7
title: Does Gender Diversity Matter at the Board Level? Firm’s Financial Performance and Gender Diversity in Sri Lankan-Listed Firms

description: The generally accepted practices and the governance-driven context influence enhancement through board independence and governance, a vital dimension in the 21st century. Additionally, board diversity has been heavily emphasized with the director heterogeneity, which includes a mix of age, gender, education, ethnicity and other diverse characteristics to be present in directors. Although increasing levels of diversity are evident worldwide, “Board Gender Diversity” within the Sri Lankan context remains low with only 8.4% of female representation on boards. Despite various benefits recognized by scholars globally by having females on boards, it is expected to achieve inclusion of better firm reputation, greater board independence and better firm performances; still it is observed that representation of women remains low in many entities under consideration. Vulnerabilities of female representation at the board level on the performance have been the research problem and it is to explore reasons for the poor female representation. The study conducted aligned with the deductive approach and it is to explore a survey strategy to formulate the research the sample has been recognised from the public companies listed on the Colombo Stock Exchange (CSE) from 2019 to 2022. This research presents empirical evidence and carefully calculated and examined evidence of whether board diversity is associated with improved financial performance in line with the research conducted in Western countries. It further reviewed that there is a greater impact of female participation at the board level over the performance of the entities in Sri Lanka.
DOI: 10.17632/j8ysdkmntt
title: Replication data for: JUE Insight: The labor market effects of place-based policies: Evidence from England’s Neighbourhood Renewal Fund

description: Replication folder including data and code for JUE Insight: The labor market effects of place-based policies: Evidence from England’s Neighbourhood Renewal Fund.
DOI: 10.6084/m9.figshare.14679570.v1
title: clinical

description: clinical information was obtained from TCGA liver cancer data set