cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3986580
title: Electron microscopy of SARS-CoV-2 particles - Dataset 07

description: The dataset contains 134 transmission electron microscopy images of ultrathin (45 nm) plastic sections through extracellular SARS-CoV-2 particles in Vero cell cultures. Images were recorded with 1376 x 1032 pixel dimensions at 0.54 nm pixel size (12 bit) and stored in 16 bit TIF format. For visualization of the images, use an image viewer capable of reading 16 bit images (e.g. IrfanView). Image files are size calibrated and can be opened with the correct size calibration using ImageJ or Fiji using the Bioformats importer. The image files are accompanied by a PDF document which describes the methods which were used for generation of the images. The dataset was produced as dataset 07 for a comparative morphometric analysis of SARS-CoV and SARS-CoV-2. Further datasets which were used for the analysis are available in this repository (see dataset description document).

Related publication: Laue M, Kauter A, Hoffmann T, Möller L, Michel J, Nitsche A. Morphometry of SARS-CoV and SARS-CoV-2 particles in ultrathin plastic sections of infected Vero cell cultures. Sci Rep. 2021 Feb 10;11(1):3515. doi: 10.1038/s41598-021-82852-7. PMID: 33568700; PMCID: PMC7876034.
DOI: 10.5281/zenodo.7689909
title: L1A - Discrete airborne LiDAR transects collected by EBA in the Brazilian Amazon (Acre e Rondônia)

description: In two campaigns (2016/2017 and 2017/2018), we collected LiDAR transects across the Brazilian Amazon. Some transects were randomly distributed over the forest and secondary forest, some were randomly distributed over the deforestation arch, and others overlapped field plots to allow for model calibration. Each transect covered a minimum of 375 hectares (12.5 km x 300 m) and was surveyed by emitting full-waveform laser pulses from a Trimble Harrier 68i airborne sensor (Trimble; Sunnyvale, CA) aboard a Cessna aircraft (model 206). The average point density was set at four returns per m², the field of view was 30°, the flying altitude was 600 m, and the transect width on the ground was approximately 494 m. Global Navigation Satellite System (GNSS) data were collected on a dual-frequency receiver (L1/L2). The pulse footprint was below 30 cm, based on a divergence angle between 0.1 and 0.3 milliradians. Horizontal and vertical accuracy were controlled to be under 1 m and 0.5 m, respectively. We used the PRODES forest mask (2015) and secondary vegetation (forest regrown after complete forest clearing) from TerraClass (2014) to distribute the transects. To calibrate and validate the airborne LiDAR predictions of biomass, we intentionally overlapped some transects with field plots from 15 research partners. In 2017/2018, we complemented the expanded the transects survey improving the representation of secondary forest based on TerraClass (INPE, 2014). To calibrate and validate the airborne LiDAR predictions of biomass. The metadata about each transect is included in the shapefile hosted at Zenodo repository (https://doi.org/10.5281/zenodo.4968706). To position the transects, we randomly generated center points with X, Y coordinates and assigned a random alpha slope angle to each point. We visually inspected the start points to ensure they were within the forest or secondary vegetation mask. If the start point was not entirely within a forest, as seen by satellite image, we discarded the seed point and selected another one. For each point, we created a shapefile with a 12.5 km x 300 m polygon. For both campaigns, if there were any conflicts with the flight plan (e.g., proximity to an airport or military restrictions), the company making the flights requested repositioning it to the closest allowed area. This deposit delivers data from Acre (1 zip file) and Rondônia (1 zip file).
description: Data were supported by Amazon Fund (grant 14.2.0929.1) and National Academy of Sciences and US Agency for International Development (grant AID-OAA-A-11–00012).
DOI: 10.6084/m9.figshare.11844783
title: Data from: Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics

description: Data files from the manuscript "Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics". <br><br>Please see the ReadMe for explanations of the files.
DOI: 10.6084/m9.figshare.11861682
title: Araucaria_snps.RAD-seq.vcf

description: Araucaria_snps.RAD-seq.vcf: vcf file containing all SNPs discovered using RAD-seq sequences including those that did not pass the quality filters are available at 10.6084/m9.figshare.11861682
DOI: 10.6084/m9.figshare.11861712
title: Araucaria_snps.RNA-seq.vcf

description: Araucaria_snps.RNA-seq.vcf: vcf file containing all SNPs discovered using RNA-seq sequences including those that did not pass the quality filters are available at 10.6084/m9.figshare.11861712
DOI: 10.6084/m9.figshare.11861718
title: Araucaria_RAD-seq_contigs.fasta

description: Araucaria_RAD-seq_contigs.fasta: fasta archive of contigs from RAD-seq are available at 10.6084/m9.figshare.11861718
DOI: 10.6084/m9.figshare.22778351
title: Design and simulation of resonant cavity-enhanced infrared detector incorporating an ultra-thin type-II superlattice

description: Raw data and graphs obtained from simulation
DOI: 10.15151/esrf-es-1092783487
title: Final Calibration Measurements of the Space Based Gamma-Ray Detector POLAR-2 using Synchrotron Radiation

description: The POLAR-2 instrument is a space-based X-/gamma-ray polarimeter which will be launched in Spring 2025. The instrument is being developed by a Swiss, Polish, German and Chinese collaboration. It will perform polarization measurements of photons coming from a range of astrophysical sources. To perform such measurements it is of crucial importance to study the performance of the instrument prior to launch using a dedicated polarized beam. For this, X-rays at different energies from a well-controlled beam are required. The ESRF facility therefore forms the ideal location to verify the POLAR-2 detector concept. Measurements will be performed on the final prototype of POLAR-2 for a range of different energies and instrument configurations in order to gain a full understanding of the detector performance. The results of this study will form the basis of one scientific publication, whereas further lessons learned from this study can still be implemented in the final detector design.
DOI: 10.17188/1194131
title: Materials Data on ScVO4 by Materials Project

description: ScVO4 is Zircon structured and crystallizes in the tetragonal I4_1/amd space group. The structure is three-dimensional. Sc3+ is bonded in a 8-coordinate geometry to eight equivalent O2- atoms. There are four shorter (2.15 Å) and four longer (2.39 Å) Sc–O bond lengths. V5+ is bonded in a tetrahedral geometry to four equivalent O2- atoms. All V–O bond lengths are 1.74 Å. O2- is bonded in a 2-coordinate geometry to two equivalent Sc3+ and one V5+ atom.
DOI: 10.17632/46ccmsgw36.1
title: Temporal patterns of vampire bat rabies and host connectivity in Belize

description: RABV seropositivity and predicted VNA titers for common vampire bats (Desmodus rotundus) sampled in Belize from 2014 through 2016.
DOI: 10.21958/phenotype:261
title: FT10

description: Flowering time was scored as days until first
open flower
description: Seeds for all 1135 accessions were surface-sterilized with chlorine gas. Seeds were distributed in pots with four replicates in a randomized block design, each replicate corresponding to one block. Plants were grown in growth chambers with the following settings: after 6 days of stratification in the dark at 4ºC, constant temperature of 10°C with 16 hours light / 8 hours darkness, 65% humidity. All trays within a block were moved to a new shelf and rotated 180º every other day to minimize position effects.
DOI: 10.5281/zenodo.10680977
title: African dust with bioaerosols

description: This data set is from WIBS measurements made in 2020 on the island of Puerto Rico
DOI: 10.5281/zenodo.10824433
title: 3D drift correction for super-resolution imaging with a single laser light

description: Original single-molecule image data and analysis results of Figures 4 and 5 in the paper
DOI: 10.5281/zenodo.12617250
title: Data and code for 'Coal mine closure substantially increases terrestrial water storage in China'
DOI: 10.5281/zenodo.7920587
title: Barotropic vorticity budget analysis in a global ocean simulation

description: The dataset contains python scripts and pre-processed data, which was used to carry out barotropic vorticity budget analyses in a realistic global ocean simulation.
DOI: 10.5285/2c6f3201f01d4346a97ff8f08a8c15c9
title: LiDAR (Light Detection And Ranging) images and model output from cliffs at Happisburgh, Norfolk, UK, 2019, from BLUE-coast and ScanLAB projects.

description: A colour LiDAR (Light Detection And Ranging) dataset was obtained at the cliffs at Happisburgh, Norfolk, UK, over a period of 9 months (April 6, 2019 to December 23, 2019). The scans were taken daily for 90% of the study period using a FARO S350 TLS (Terrestrial LiDAR Scanner). Scans were carried out from two locations consecutively, positioned at around 40 m from the cliffs. The full scans are also split into smaller subsets: "slices", 1 m wide bands oriented perpendicular to the shoreline, and "grids", smaller areas of the beach, to assist analysis. The numerical model SWAN (Simulated Waves Nearshore) (v41.31a), run in non-stationary mode, was used to simulate hourly sea states at the study site to aid in the context of environmental conditions. Wind parameters from the ERA5 reanalysis and bathymetry from the OceanWise 1 arc second digital elevation model (DEM) were used to force the SWAN model, and obtained wave parameters in 4x6 km rectangular grid around the scanning site, with a 10m interval, and a 26x26 km square grid encompassing the smaller grid, with a 100 m interval. The LiDAR scans were also projected into both colour and intensity images, viewing the shoreline from above. This research was funded by the UK Natural Environment Research Council (NE/M004996/1; BLUE-coast project). The on-location LiDAR Scanning and Technical R&D operated by ScanLAB Projects Ltd was funded by Innovate UK's Audience of the Future Program (Multiscale 3D Scanning with Framerate for TV and Immersive Applications project). The first 6 months of LiDAR scans (April to September 2019) were funded by Innovate UK, and this project was continued by the NERC BLUE-coast funding for the last 3 months (October to December 2019).
DOI: 10.6084/m9.figshare.1130849
title: GEUVADIS Processed Data

description: These are processed files from the GEUVADIS study that were produced in the preparation of the paper: http://biorxiv.org/content/biorxiv/early/2014/03/30/003665.full.pdf
DOI: 10.6084/m9.figshare.23898936
title: Measured Hb data

description: Measured data of the phantoms with fixed mus for the phantoms with fixed mus. The measured diffuse reflectance spectra, expected mua, expected mus, expected g were also included.
DOI: 10.6084/m9.figshare.24645459
title: Data File 1.xlsx

description: Specific name and order of spatial and superficial texture & roughness features of multicellular tumor spheroids.
DOI: 10.6084/m9.figshare.24953523
title: Correlation analysis（A.ys）.tex

description: The correlation matrix between terahertz spectral absorption
coefficients and the content of each element in the protoliths.
DOI: 10.6084/m9.figshare.25449331
title: Supplementary Material for: Joint effect of physical activity and sedentary behavior with the female urinary incontinence: an analysis of NHANES 2011-2016

description: Introduction: Our study aimed to assess the independent and joint effects of leisure-time physical activity and sedentary behavior with urinary incontinence (UI).
Methods: Data were obtained from the National Health and Nutrition Examination Survey 2011-2016. The primary endpoint was the risk of different subtypes of UI, including stress UI, urgency UI, and mixed UI. The primary exposures were leisure-time physical activity and sedentary behavior. Sedentary behavior was assessed by screen time. Weighted univariate and multivariate logistic regression models were used to observe the independent and joint relationship of leisure-time physical activity and sedentary behavior with UI risk (including stress UI, urgency UI, and mixed UI). 
Results: In total, 6,927 female participants were included in this analysis. 3,377 females did not have UI, 1,534 had stress UI, 836 had urgency UI, and 1,180 had mixed UI. Screen time with ≥5h/day was associated with increased odds of urgency UI [odds ratio (OR) =1.31, 95% confidence intervals (CI): 1.06-1.61], which indicated the relationship of sedentary behavior and urgency UI. Engaging in leisure-time physical activity with of ≥750 metabolic equivalent (MET)·min/week was found to be significantly associated with reduced likelihood of mixed UI (OR=0.68, 95%CI: 0.55-0.85). Additionally, the interaction term of leisure-time physical activity&lt;750 MET· min/week and screen time≥5h/day was observed to be linked with increased odds of urgency and mixed UI. 
Conclusion: Participants experiencing a lower level of leisure-time physical activity and a higher level of sedentary behavior together might enhance the urgency and mixed UI risk.
DOI: 10.6084/m9.figshare.25835209
title: Supplementary Material for: EASL–EASD–EASO Clinical Practice Guidelines on the management of metabolic dysfunction-associated steatotic liver disease (MASLD)

description: Medicine
DOI: 10.7488/ds/1350
title: The third International Stroke Trial (IST-3)

description: The IST-3 trial is a large-scale randomised controlled trial of intravenous thrombolytic therapy of the drug Alteplase for patients with acute ischaemic stroke. The dataset includes a number of files describing the IST-3 dataset. The documentation files may be freely downloaded. The raw patient-level data files were under embargo until the 25th of January 2021 (“datashare_aug2015.sas7bdat” or “ist3.dat”); since that embargo has expired, it is no longer necessary to apply to the study investigators for access. *** The IST3 has an international trials registry ID number, which enables all the trials outputs to be linked: ISRCTN25765518 https://doi.org/10.1186/ISRCTN25765518
DOI: 10.15468/dl.6jesg0
title: Occurrence Download

description: A dataset containing 508 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alsophila setosa Kaulf."
 ]
}

 The dataset includes 508 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008110-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17630/7cee889f-aa36-4c27-a485-262c8a5d336b
title: Widefield light sheet microscopy using an Airy beam combined with deep-learning super-resolution (dataset)
DOI: 10.17632/b48n46bfry.1
title: A public dataset of overground walking kinetics and lower-body kinematics in healthy adult individuals on different sessions within one day

description: The dataset comprises raw kinetic and lower-body kinematic data (both in .c3d and .tsv) of nine healthy subjects (3 female, 6 male; M age: 27.4 years, SD 3.0; M body height: 1.74 m, SD 0.11; M body mass: 73.2 kg, SD 13.3) during overground walking. All subjects were without gait pathology and free of lower extremity pain or injuries. The .c3d files are named in the following format: S{subject_id}_S{session_id}_{trial number}_{static/gait}.c3d. Separate text files were generated for the kinematic marker trajetories {.tsv} and kinetic force signals of the first {_f_1.tsv} and second {_f_2.tsv} force plate. When using (any part) of this dataset, please cite this dataset and the original article: Horst, F., Eekhoff, A., Newell, K. M., & Schöllhorn, W. I. (2019). A public dataset of overground walking kinetics and lower-body kinematics in healthy adult individuals on different sessions within one day. Mendeley Data, v1. http://dx.doi.org/10.17632/b48n46bfry.1 Horst, F., Eekhoff, A., Newell, K. M., & Schöllhorn, W. I. (2017). Intra-individual gait patterns across different time-scales as revealed by means of a supervised learning model using kernel-based discriminant regression. PloS one, 12(6), e0179738. https://doi.org/10.1371/journal.pone.0179738 Please feel free to send us your technical questions, requests and bug reports by email: horst@uni-mainz.de
DOI: 10.17632/z6skpk2mh6.1
title: Stressful Life Events Predicts Central Pain Symptoms

description: Hypotheses: (a) stressful life events will predict greater centralized pain symptoms and greater pain intensity; (b) greater anger and perceived injustice will both mediate the relationship between stressful life events and pain-related symptoms in parallel; and (c) stressful life events, anger, and perceived injustice will account for more variance of centralized pain symptoms than pain intensity.

Recruitment: Participants were recruited via Prolific between July and September 2023. Eligibility included at least 18 years or older; residing in the U.S.; self-reporting chronic pain for at least 3 months; and identifying as African or Black/African American, Latino/Hispanic, or East, Southeast, or South Asian.

Measures: Participants self-reported their age, gender, ethnicity, income, education, employment status, and health insurance.

Participants self-reported following standardized measures: Stressful Life Events Questionnaire–Revised (Green et al., 2006); PROMIS Anger – Short Form (Schalet et al., 2016); Injustice Experience Questionnaire Short-Form (Sullivan et al., 2016); Central Sensitization Inventory: Part A (Mayer et al., 2012); and single item on pain intensity from PROMIS – 29 Profile v2.1 (Cella et al., 2010).

Bivariate Correlations: Stressful life events (M = 3.56, SD = 2.76) were positively correlated with anger (r = .29, p &lt; .001), perceived injustice (r = .36, p &lt; .001), centralized pain symptoms (r = .33, p &lt; .001), and pain intensity (r = .27, p &lt; .001). Anger (M = 54.59, SD = 11.50) and perceived injustice (M = 4.54, SD = 3.04) were positively correlated to one another (r = .52, p &lt; .001). Anger was positively correlated with centralized pain symptoms (r = .63, p &lt; .001) and pain intensity (r = .39, p &lt; .001). Perceived injustice was positively correlated with centralized pain symptoms (r = .59, p &lt; .001) and pain intensity (r = .48, p &lt; .001). Centralized pain symptoms (M = 37.95, SD = 18.60) and pain intensity (M = 3.80, SD = 2.16) were positively correlated to one another (r = .53, p &lt; .001).
DOI: 10.18150/k2d3aa
title: Data for article entitled: Amplification of femtosecond pulses with AI-assisted spectral phase modulation

description: Files include the data presented in the manuscript entitled: "Amplification of femtosecond pulses with AI-assisted spectral phase modulation" by M. Krakowski, A. Kwaśny and G. Soboń.Figure 4 presents the characterization of a reference laser pulse with no optimization (optical spectrum, spectral phase, temporal shape, temporal phase, autocorrelation trace, fit to the autocorrelation trace)Figure 6 presents the cost functions of the algorithm for a constant number of iterations – 20; the varying parameters are the number of stripes on the SLM and number of the agents in the GWO algorithmFigure 7 presents the Generated phase masks in GWO settings of 800 agents, for 20, 40, 80, 160, 320 and 480 stripes.Figure 8 presents the characterization of the optimized pulse (optical spectrum, spectral phase, temporal shape, temporal phase, autocorrelation trace, fit to the autocorrelation trace)
DOI: 10.5066/f7833r62
title: Assessing Techniques to Enhance Barrier Characteristics of High-head Navigation Dams on the Upper Illinois River: Data

description: The dataset is comprised of river conditions at La Grange, Peoria, Starved Rock, Marseilles, and Dresden Island Locks and Dams, along the Illinois River. Data were recorded bihourly from 1 Jan 1985 � 31 Dec 2016. For each location, pool elevation (ft), tailwater elevation (ft), head height (ft; calculated by the difference between pool elevation and tailwater elevation), discharge (cfs; when available) and total gate openness (sum of all open gates in ft), are given, where available. Open river conditions were calculated (0 = closed, 1 = open) for each two hour time period. Dam openness was assessed using the U.S. Army Corps of Engineers thresholds for open river conditions at each location.
DOI: 10.5066/p99q4chm
title: Hydrodynamic, sediment transport, and sediment flocculation data from south San Francisco Bay, California, summer 2020

description: The U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center collected hydrodynamic and suspended sediment flocculation data at channel and shallow water sites in south San Francisco Bay in July 2020. The data were used to determine water column stratification, turbulence profiles, and floc size evolution. The goal of this project was to bound the controls on floc size and floc settling velocity to improve estimates of sediment fluxes and consider error in numerical models of sediment transport in San Francisco Bay. This data release includes hydrodynamic, sediment concentration, and particle size timeseries during July 2020, as well as sediment bed properties, water column particle size distributions, and CTD profiles collected on four days in July 2020 at both sites. Details on station location, instrumentation, and measured variables are included on pages for each data type. These data were collected as part of a collaborative project with the USGS California Water Science Center. Funding was provided by the San Francisco Estuary Institute.
DOI: 10.5281/zenodo.10069332
title: Dataset for the paper Exploring the Impact of Longitudinal Modulation on the Twisting Angle in Pancharatnam-Berry Phase-Based Waveguides
DOI: 10.5281/zenodo.11088615
title: Model generated open-closed field topology maps produced by ISSI team "Magnetic Open Flux And Solar Wind Structuring Of Interplanetary Space"

description: Open and closed magnetic field topologies of the solar corona generated using four PFSS based coronal models (EUHFORIA, WSA, MULTI-VP, PSI-PFSS) and one full MHD coronal model (PSSI-MHD) using two different types of HMI-ADAPT magnetic field maps (with and without Active Regions (AR) added retrospectively). The magnetograms used are accessible here https://doi.org/10.5281/zenodo.10211762 (Henney, Carl. ‘ADAPT Global Solar Magnetic Maps - 2010 Sep 18-20 (w/ & W/o Farside Active Region Input)’. Zenodo, 28 November 2023).

These model outputs were generated by the ISSI team "Magnetic Open Flux And Solar Wind Structuring Of Interplanetary Space" and were used for the paper accessible on Arxiv via this link: https://arxiv.org/abs/2311.04024
DOI: 10.5281/zenodo.3740547
title: anTraX: high throughput video tracking of color-tagged insects (benchmark datasets)

description: Datasets used to benchmark anTraX tracking software. Each dataset contains the raw videos, a configured anTraX session with all parameters required to reproduce the tracking results from the paper, as well as the tracking output for the first video in each dataset.
DOI: 10.5281/zenodo.7774974
title: Dataset and supplemental codes for : "Referenceless characterisation of complex media using physics-informed neural networks"

description: Dataset and associated supplemental codes for : "Referenceless characterisation of complex media using physics-informed neural networks".
DOI: 10.5281/zenodo.8244904
title: AM4 Output Data for Clark, Lin, Hill (2023)

description: Data associated with the study entitled "ITCZ Response to Disabling Parameterized Convection in Global Fixed-SST Aquaplanet Simulations at 50 km and 6 km Resolutions," coauthored by Joseph P. Clark, Pu Lin and Spencer A. Hill