cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.grs5wm
title: Occurrence Download

description: A dataset containing 1938 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((96.18822 21.99497,96.1429 21.99017,96.1223 22.02724,96.07527 22.02244,96.0533 22.00356,96.04162 21.95927,96.03235 21.93317,96.01141 21.88992,96.01759 21.87481,96.04677 21.86897,96.09449 21.87618,96.09346 21.85421,96.12642 21.8549,96.12574 21.89232,96.18616 21.92734,96.18822 21.99497))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is CC0 1.0",
 "OccurrenceStatus is Present",
 "Year 2015-2019"
 ]
}

 The dataset includes 1938 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089369-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgnorb
title: Occurrence Download

description: A dataset containing 8279 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mustela frenata Lichtenstein, 1831"
 ]
}

 The dataset includes 8279 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014196-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngt5v7
title: Occurrence Download

description: A dataset containing 859 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Musa balbisiana Colla"
 ]
}

 The dataset includes 859 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052003-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gfuaym
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fargesia porphyrea T.P.Yi"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001616-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jy655p
title: Occurrence Download

description: A dataset containing 847 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "OccurrenceStatus is Present",
 "TaxonKey is Felis silvestris Schreber, 1777"
 ]
}

 The dataset includes 847 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089364-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6fax8
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Cololejeunea subscariosa (Spruce) Pócs"
 ]
}

 The dataset includes 31 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061280-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5c4xbr
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "OccurrenceStatus is Present",
 "TaxonKey is Solanum berthaultii Hawkes"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057904-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.46ksuj
title: Occurrence Download

description: A dataset containing 1461 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oryza officinalis Wall. ex Watt"
 ]
}

 The dataset includes 1461 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098571-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cduc2l
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Year 2000-2019",
 {
 "or" : [
 "StateProvince is tabasco",
 "StateProvince is oaxaca",
 "StateProvince is veracruz",
 "StateProvince is yucatan",
 "StateProvince is campeche",
 "StateProvince is chiapas",
 "StateProvince is quintana roo"
 ]
 },
 "TaxonKey is Leptonycteris yerbabuenae Martínez & Villa-R., 1940"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014195-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dzn6gq
title: Occurrence Download

description: A dataset containing 94237 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium draba L."
 ]
}

 The dataset includes 94237 records from 1032 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057924-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ulk2v9
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Brazil",
 "Country is Paraguay",
 "Country is Bolivia (Plurinational State of)"
 ]
 },
 "Year 1000-2019",
 "HasCoordinate is true",
 "TaxonKey is Pteronura brasiliensis Zimmermann, 1780",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 131 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014197-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jg98f7
title: Occurrence Download

description: A dataset containing 1055 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tympanuchus pallidicinctus (Ridgway, 1873)"
 ]
}

 The dataset includes 1055 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057917-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2w7df
title: Occurrence Download

description: A dataset containing 1318 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Micranthes tenuis (Wahlenb.) Small"
 ]
}

 The dataset includes 1318 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038471-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpwhun
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-75.8773786000000001 41.2352411999999973, -75.8773786000000001 41.2367474099999995, -75.8773786000000001 41.2385707099999976, -75.8773786000000001 41.2398390899999967, -75.8773786000000001 41.2408696500000005, -75.8773786000000001 41.2419794899999985, -75.8773786000000001 41.2431685999999971, -75.8757979300000045 41.2431685999999971, -75.8746126199999935 41.2431685999999971, -75.8724790699999971 41.2431685999999971, -75.8709776700000020 41.2431685999999971, -75.8689231400000068 41.2431685999999971, -75.8671056599999929 41.2431685999999971, -75.8663152000000025 41.2431685999999971, -75.8663152000000025 41.2418209399999967, -75.8663152000000025 41.2410282000000024, -75.8663152000000025 41.2393634499999990, -75.8663152000000025 41.2382536100000010, -75.8663152000000025 41.2365095800000034, -75.8663152000000025 41.2352411999999973, -75.8675797799999998 41.2352411999999973, -75.8696343200000030 41.2352411999999973, -75.8713727800000015 41.2352411999999973, -75.8735853499999990 41.2352411999999973, -75.8759559700000068 41.2352411999999973, -75.8773786000000001 41.2352411999999973))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 110 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078710-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.46dkex
title: Occurrence Download

description: A dataset containing 31225323 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 31225323 records from 3513 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008466-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15195935
title: alophia_silvestris_spades_01.fasta.gz
DOI: 10.5281/zenodo.15195936
title: alophia_silvestris_spades_01.fasta.gz
DOI: 10.5281/zenodo.14888004
title: Freyja Usher Barcode dataset
DOI: 10.5281/zenodo.14888005
title: Freyja Usher Barcode dataset
DOI: 10.15468/dl.z9738g
title: Occurrence Download

description: A dataset containing 222994 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pimpinella saxifraga L.",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "Year is greater than or equal to 1900",
 "Year is less than or equal to 2010"
 ]
}

 The dataset includes 222994 records from 627 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000302-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48804/1fanps
title: Dataset for the manuscript "The role of metabolite exchange to their spatial distribution in tomato fruit"

description: Dataset for the manuscript "The role of metabolite exchange to their spatial distribution in tomato fruit". 
The dataset includes osmolality data for the different tissues, metabolite concentrations, 13C labels for the feeding experiments, and the relative areas of metabolites for the three tissues in the different preparation states.
DOI: 10.34740/kaggle/dsv/10782105
title: Does Evil Move in Straight Lines ?
DOI: 10.15468/dl.u9pzqs
title: Occurrence Download

description: A dataset containing 4469 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "Geometry POLYGON((-132.0125 23.17411,-39.95536 23.17411,-39.95536 52.26161,-132.0125 52.26161,-132.0125 23.17411))",
 "TaxonKey is Spiraea japonica L.fil."
 ]
}

 The dataset includes 4469 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000317-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28435307
title: <b>H</b><b>abitat</b><b>-dependent</b><b> </b><b>d</b><b>iversity, functional composition</b><b>,</b><b> community assembly</b><b>,</b><b> and </b><b>multitrophic network </b><b>of soil protists</b>

description: Habitat had long been proposed as a “templet” for ecological strategies of organisms in nature. While protists are widespread in soil and play an important role in maintaining soil ecological functions, little is known about the habitat dependence of characteristics of soil protistan communities, especially at large spatial scales. Here, we characterized the protistan communities of 270 soil samples collected from five habitat types (i.e., farmland, forest, Gobi desert, grassland, and mine wasteland) to unveil the habitat-specific diversity, functional attributes, environmental affinities, and co-occurrence patterns of soil protists.
DOI: 10.6084/m9.figshare.28435307.v3
title: <b>H</b><b>abitat</b><b>-dependent</b><b> </b><b>d</b><b>iversity, functional composition</b><b>,</b><b> community assembly</b><b>,</b><b> and </b><b>multitrophic network </b><b>of soil protists</b>

description: Habitat had long been proposed as a “templet” for ecological strategies of organisms in nature. While protists are widespread in soil and play an important role in maintaining soil ecological functions, little is known about the habitat dependence of characteristics of soil protistan communities, especially at large spatial scales. Here, we characterized the protistan communities of 270 soil samples collected from five habitat types (i.e., farmland, forest, Gobi desert, grassland, and mine wasteland) to unveil the habitat-specific diversity, functional attributes, environmental affinities, and co-occurrence patterns of soil protists.
DOI: 10.6084/m9.figshare.28435307.v2
title: <b>H</b><b>abitat</b><b>-dependent</b><b> </b><b>d</b><b>iversity, functional composition</b><b>,</b><b> community assembly</b><b>,</b><b> and </b><b>multitrophic network </b><b>of soil protists</b>

description: Habitat had long been proposed as a “templet” for ecological strategies of organisms in nature. While protists are widespread in soil and play an important role in maintaining soil ecological functions, little is known about the habitat dependence of characteristics of soil protistan communities, especially at large spatial scales. Here, we characterized the protistan communities of 270 soil samples collected from five habitat types (i.e., farmland, forest, Gobi desert, grassland, and mine wasteland) to unveil the habitat-specific diversity, functional attributes, environmental affinities, and co-occurrence patterns of soil protists.
DOI: 10.5281/zenodo.14887814
title: FESOM2.1-REcoM3-MEDUSA2: an ocean-sea ice-biogeochemistry model coupled to a sediment model

description: This is the model result of the publication "FESOM2.1-REcoM3-MEDUSA2: an ocean-sea ice-biogeochemistry model coupled to a sediment model" by Ye et al. (in press), Geoscientific Model Development. It contains the results of the coupled simulation: from REcoM3:- primary productivity (NPPd for diatoms and NPPn for small phytoplankton);- particle sinking from the bottom layer (sinkCalc for calcite, sinkOpal for opal, and sinkPOC for particulate organic carbon);exchange fluxes between the sediment model MEDUSA2 and the ocean model FESOM2.1-REcoM3:- medusa_diffflux: diffusive fluxes of dissolved inorganic carbon (df_dic), alkalinity (df_alk), dissolved inorganic nitrogen (df_din), dissolved oxygen (df_o2), and silicate (df_dsi) from sediment to ocean;- medusa_topflux: deposition fluxes of calcite, opal, clay, and two classes of organic matter on the sediment top;from MEDUSA2:- medusa_reaclay: sediment distrubition of organic matter, calcite, opal and clay;- OM_degradation: degradation of organic matter by aerobic respiration, denitrification and sulfate reduction.

The coupled simulation ran for 2000 years and this dataset contains results averaged for the last 50 years, whichare shown in the publication. The original model output was written in an unstructured mesh and the dataset provided here was interpolated into a regular mesh of 360X180.

Please contact the corresponding author (ying.ye@awi.de) for further information.
DOI: 10.5281/zenodo.14887815
title: FESOM2.1-REcoM3-MEDUSA2: an ocean-sea ice-biogeochemistry model coupled to a sediment model

description: This is the model result of the publication "FESOM2.1-REcoM3-MEDUSA2: an ocean-sea ice-biogeochemistry model coupled to a sediment model" by Ye et al. (in press), Geoscientific Model Development. It contains the results of the coupled simulation: from REcoM3:- primary productivity (NPPd for diatoms and NPPn for small phytoplankton);- particle sinking from the bottom layer (sinkCalc for calcite, sinkOpal for opal, and sinkPOC for particulate organic carbon);exchange fluxes between the sediment model MEDUSA2 and the ocean model FESOM2.1-REcoM3:- medusa_diffflux: diffusive fluxes of dissolved inorganic carbon (df_dic), alkalinity (df_alk), dissolved inorganic nitrogen (df_din), dissolved oxygen (df_o2), and silicate (df_dsi) from sediment to ocean;- medusa_topflux: deposition fluxes of calcite, opal, clay, and two classes of organic matter on the sediment top;from MEDUSA2:- medusa_reaclay: sediment distrubition of organic matter, calcite, opal and clay;- OM_degradation: degradation of organic matter by aerobic respiration, denitrification and sulfate reduction.

The coupled simulation ran for 2000 years and this dataset contains results averaged for the last 50 years, whichare shown in the publication. The original model output was written in an unstructured mesh and the dataset provided here was interpolated into a regular mesh of 360X180.

Please contact the corresponding author (ying.ye@awi.de) for further information.
DOI: 10.15468/dl.n938ek
title: Occurrence Download

description: A dataset containing 266937 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "OccurrenceStatus is Present",
 "TaxonKey is Acer campestre L."
 ]
}

 The dataset includes 266937 records from 2029 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000306-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0204287.10fu
title: SH0204287.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0204288.10fu
title: SH0204288.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0204289.10fu
title: SH0204289.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0204290.10fu
title: SH0204290.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0204291.10fu
title: SH0204291.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.