cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20344044
title: National Restoration Analysis Results

description: The file "NationalRestorationAnalysisHexbins" represents the output data file from WWF-Canada's assessment of the relative priority of restoring converted landscapes based on potential to store carbon over the long term, as well as enhance biodiversity through habitat provisioning. <br> The results are represented at the 100km^2 hexbins with the following fields. T_Carbon_P = Estimated net potential of converted lands in the hexbin to store carbon following complete restoration B_Carbon_P = Estimated net potential of converted lands in the hexbin to store carbon in biomass following complete restoration S_Carbon_P = Estimated net potential of converted lands in the hexbin to store carbon in soil following complete restoration E_STARr_P = Cumulative STARr metric calculated for all endangered taxa in the hexbin* T_STARr_P = Cumulative STARr metric calcualted for all taxa in the hexbin* LC_Wetland = Estimated area of converted lands in the hexbin which would natural support wetland habitat in km^2 LC_Forest = Estimated area of converted lands in the hexbin which would natural support forest habitat in km^2 LC_Grassla = Estimated area of converted lands in the hexbin which would natural support grassland habitat in km^2 LC_Shrubla = Estimated area of converted lands in the hexbin which would natural support shrubland habitat in km^2 LC_Lichen = Estimated area of converted lands in the hexbin which would natural support exposed lichen habitat in km^2 LC_Barren = Estimated area of converted lands in the hexbin which would natural support exposed barren habitat in km^2 Hexbin_are = Total area of hexbin in km^2 Human_area = Total area of hexbin represented by converted lands in km^2 Human_Prop = Portion of hexbin area represented by converted lands ROOT_5Mha = Output selection frequency of ROOT optimizer for an area-based restoration target of 5 million ha (50,000 km^2) , higher numbers indicating greater agreement ROOT_10Mha = Output selection frequency of ROOT optimizer for an area-based restoration target of 10 million ha (100,000 km^2) , higher numbers indicating greater agreement ROOT_15Mha = Output selection frequency of ROOT optimizer for an area-based restoration target of 15 million ha (150,000 km^2) , higher numbers indicating greater agreement <br> *for description of STARr metric see: Mair, L., Bennun, L.A., Brooks, T.M. et al. A metric for spatially explicit contributions to science-based species targets. Nat Ecol Evol 5, 836–844 (2021). https://doi.org/10.1038/s41559-021-01432-0
DOI: 10.6084/m9.figshare.20109282
title: RANKL interferes with osteoclastogenesis in PEG-fused U937 cells through LGR4

description: RANKL plays an important role in the differentiation and maturation process of preosteoclast cells. The osteoclast is a multinucleated cell that can have various sizes and a variable number of nuclei. However, there are no models that allow us to understand how successive cell fusions have a limit, or how cell fusion is regulated. The present investigation was aimed to determine whether fusing U937 cells with PEG to generate osteoclast-like cells expresses LGR4 and whether applying RANKL to these cells modifies osteoclastic activity compared to non-PEG-fused and RANKL-treated cells. By fusing U937 cells with PEG, it was found that the LGR4 receptor expression was promoted as early as 24 hours of culture. Applying RANKL before or after fusion inhibits osteoclastic activity. Interfering RANKL interaction with LGR4 in PEG-treated cells recovers and increases cell fusion and osteoclastic activity. PEG-fused U937 cells show osteoclast markers similar to those observed in the classical RANKL-stimulated cell model. Our model allows us to understand that RANKL has fusogenic activity during the first days of culture and in fused cells modulates fusion, contributing to differentiate the role of RANKL before and after fusion through LGR4.
DOI: 10.6084/m9.figshare.20109282.v1
title: RANKL interferes with osteoclastogenesis in PEG-fused U937 cells through LGR4

description: RANKL plays an important role in the differentiation and maturation process of preosteoclast cells. The osteoclast is a multinucleated cell that can have various sizes and a variable number of nuclei. However, there are no models that allow us to understand how successive cell fusions have a limit, or how cell fusion is regulated. The present investigation was aimed to determine whether fusing U937 cells with PEG to generate osteoclast-like cells expresses LGR4 and whether applying RANKL to these cells modifies osteoclastic activity compared to non-PEG-fused and RANKL-treated cells. By fusing U937 cells with PEG, it was found that the LGR4 receptor expression was promoted as early as 24 hours of culture. Applying RANKL before or after fusion inhibits osteoclastic activity. Interfering RANKL interaction with LGR4 in PEG-treated cells recovers and increases cell fusion and osteoclastic activity. PEG-fused U937 cells show osteoclast markers similar to those observed in the classical RANKL-stimulated cell model. Our model allows us to understand that RANKL has fusogenic activity during the first days of culture and in fused cells modulates fusion, contributing to differentiate the role of RANKL before and after fusion through LGR4.
DOI: 10.6084/m9.figshare.20286360
title: The BMP and FGF pathways reciprocally regulate odontoblast differentiation

description: Previous studies demonstrated that the exposure of primary dental pulp (DP) cultures to fibroblast growth factor 2 (FGF2) between days 3–7 exerted significant and long-lasting stimulatory effects on odontoblast differentiation and <i>Dspp</i> expression. These effects involved the increased expression of components of bone morphogenetic protein (BMP) signaling and were reverted by a BMP inhibitor noggin. FGF2 also transiently stimulated osteoblast differentiation and the expression of <i>Ibsp</i> and <i>Dmp1</i>. The present study aimed to further explore interactions between BMP and FGF signaling during odontoblast and osteoblast differentiation in DP cultures. Cultures were established using DP tissue isolated from non-transgenic and fluorescent reporter (DSPP-Cerulean, BSP-GFP, and DMP1-mCherry) transgenic mice and exposed to BMP2, FGF2, SU5402 (an FGF receptor inhibitor), and noggin between days 3–7. Mineralization, gene expression, fluorescent protein expression, and odontoblast formation were examined using xylenol orange, quantitative PCR, fluorometric analysis, and immunocytochemistry, respectively. BMP2 activated SMAD1/5/8 but not ERK1/2 signaling, whereas FGF2 exerted opposite effects. BMP2 did not affect mineralization, the expression of <i>Ibsp</i> and <i>Dmp1</i>, and the percentage of DSPP-Cerulean+ odontoblasts but significantly increased <i>Dspp</i> and DSPP-Cerulean. In cultures exposed to BMP2 and FGF2, respectively, both SU5402 and noggin led to long-lasting decreases in <i>Dspp</i> and DSPP-Cerulean and transient decreases in <i>Dmp1</i> and DMP1-mCherry without affecting <i>Ibsp</i> and BSP-GFP. BMP2 and FGF2 exerted reciprocal stimulatory effects on odontoblast differentiation, whereas their effects on osteoblast differentiation were mediated independently. These data will further elucidate the perspectives of using BMP2 and FGF2 for dentin regeneration/repair.
DOI: 10.6084/m9.figshare.20286360.v1
title: The BMP and FGF pathways reciprocally regulate odontoblast differentiation

description: Previous studies demonstrated that the exposure of primary dental pulp (DP) cultures to fibroblast growth factor 2 (FGF2) between days 3–7 exerted significant and long-lasting stimulatory effects on odontoblast differentiation and <i>Dspp</i> expression. These effects involved the increased expression of components of bone morphogenetic protein (BMP) signaling and were reverted by a BMP inhibitor noggin. FGF2 also transiently stimulated osteoblast differentiation and the expression of <i>Ibsp</i> and <i>Dmp1</i>. The present study aimed to further explore interactions between BMP and FGF signaling during odontoblast and osteoblast differentiation in DP cultures. Cultures were established using DP tissue isolated from non-transgenic and fluorescent reporter (DSPP-Cerulean, BSP-GFP, and DMP1-mCherry) transgenic mice and exposed to BMP2, FGF2, SU5402 (an FGF receptor inhibitor), and noggin between days 3–7. Mineralization, gene expression, fluorescent protein expression, and odontoblast formation were examined using xylenol orange, quantitative PCR, fluorometric analysis, and immunocytochemistry, respectively. BMP2 activated SMAD1/5/8 but not ERK1/2 signaling, whereas FGF2 exerted opposite effects. BMP2 did not affect mineralization, the expression of <i>Ibsp</i> and <i>Dmp1</i>, and the percentage of DSPP-Cerulean+ odontoblasts but significantly increased <i>Dspp</i> and DSPP-Cerulean. In cultures exposed to BMP2 and FGF2, respectively, both SU5402 and noggin led to long-lasting decreases in <i>Dspp</i> and DSPP-Cerulean and transient decreases in <i>Dmp1</i> and DMP1-mCherry without affecting <i>Ibsp</i> and BSP-GFP. BMP2 and FGF2 exerted reciprocal stimulatory effects on odontoblast differentiation, whereas their effects on osteoblast differentiation were mediated independently. These data will further elucidate the perspectives of using BMP2 and FGF2 for dentin regeneration/repair.
DOI: 10.6084/m9.figshare.21078136
title: Real-time measurement of debris-flow impact force at Jiangjia Ravine, China

description: This is Metadata for real-time impact-force measurements and field observations of debris flows recorded by a sensor network in Jiangjia Ravine, China. We observed 49 debris flows during and after a storm on August 25, 2004, including 42 debris-flow surges and seven continuous debris flows.
DOI: 10.6073/pasta/d1a7d072afca4d6bfc0e54f44c6982ae
title: Size-fractionated net primary productivity (NPP) estimates based on 13C uptake during cruises along the Northeast U.S. Shelf Long Term Ecological Research (NES-LTER) Transect, ongoing since 2019

description: This dataset consists of primary production measurements based on uptake of carbon-13 added as 13C-bicarbonate during 24-h deckboard incubations of seawater. Sampling occurred on cruises along the Northeast U.S. Shelf Long Term Ecological Research (NES-LTER) Transect during summer, fall, and winter, starting in summer 2019. Net primary production (NPP) was determined from particulate organic carbon (POC) content and associated stable isotope enrichment. Two data tables are included: 1. depth-specific primary productivity based on fractional light levels of the surface irradiance with reference to the profile of photosynthetically active radiation (PAR), and 2. integrated primary productivity. The tables derive from the raw data included as other entities.
DOI: 10.17909/610m-9474
title: TESS-Gaia Light Curve ("TGLC")

description: TESS-Gaia Light Curve (TGLC) is a PSF-based TESS full-frame image (FFI) light curve product. Using Gaia DR3 as priors, the team forward models the FFIs with the effective point spread function to remove contamination from nearby stars. The resulting light curves show a photometric precision closely tracking the pre-launch prediction of the noise level: TGLC's photometric precision consistently reaches ≲2% at 16th TESS magnitude even in crowded fields, demonstrating excellent decontamination and deblending power.
DOI: 10.5281/zenodo.7551891
title: Overcoming immune deficiency with allogrooming

description: Data in excel files formatted for analysis with SPSS.
DOI: 10.5281/zenodo.7551890
title: Overcoming immune deficiency with allogrooming

description: Data in excel files formatted for analysis with SPSS.
DOI: 10.5281/zenodo.5847092
title: Simulation dataset for "Quantifying Energy Conversion in Higher Order Phase Space Density Moments in Plasmas"

description: Simulation dataset for the simulation figure used in the paper
DOI: 10.5281/zenodo.5847091
title: Simulation dataset for "Quantifying Energy Conversion in Higher Order Phase Space Density Moments in Plasmas"

description: Simulation dataset for the simulation figure used in the paper
DOI: 10.17909/cxqd-rc33
title: CEERS JWST/NIRSpec medium data
DOI: 10.21227/1zkd-cd88
title: L-shape Array performance evaluation code and files

description: This data file contains simulated channel mat files and MATLAB code for performance evaluation of L-shape array based technique for massive MIMO systems to reduce cross user correlation of tightly coupled MTs.
DOI: 10.6084/m9.figshare.21926064
title: Average low-luminosity AGN spectral energy distributions

description: This dataset contains the average LLAGN SED data assuming that either a radiatively inefficient accretion flow or a relativistic jet dominates most of the electromagnetic emission. Files ad-average.dat: radiatively inefficient accretion flow dominates most of the emission jd-average.dat: relativistic jet dominates most of the emission File structure ASCII files with the following structure: column 1: log10(nu/Hz) column 2: log10(nu Lnu / erg per sec) For more information Please refer to Figure 14 in publication doi:10.1093/mnras/stt2388. The corresponding page from the paper is also attached for convenience.
DOI: 10.6084/m9.figshare.21926064.v1
title: Average low-luminosity AGN spectral energy distributions

description: This dataset contains the average LLAGN SED data assuming that either a radiatively inefficient accretion flow or a relativistic jet dominates most of the electromagnetic emission. Files ad-average.dat: radiatively inefficient accretion flow dominates most of the emission jd-average.dat: relativistic jet dominates most of the emission File structure ASCII files with the following structure: column 1: log10(nu/Hz) column 2: log10(nu Lnu / erg per sec) For more information Please refer to Figure 14 in publication doi:10.1093/mnras/stt2388. The corresponding page from the paper is also attached for convenience.
DOI: 10.17909/fpzd-h638
title: TIC279401253 TESS 2 min cadence light curve

description: TIC279401253 TESS 2 min cadence light curve
DOI: 10.6084/m9.figshare.21926085
title: Suplementary Table 3A and 3B

description: <strong>Table 3A. Comparison of demographic data and clinical characteristics of the groups according to ≤30 and &gt;30 days follow-up.</strong> <br> <strong>Table 3B. Comparison of demographic data and clinical characteristics of the groups according to &lt;180 and ≥180 days follow-up</strong>
DOI: 10.6084/m9.figshare.21926085.v1
title: Suplementary Table 3A and 3B

description: <strong>Table 3A. Comparison of demographic data and clinical characteristics of the groups according to ≤30 and &gt;30 days follow-up.</strong> <br> <strong>Table 3B. Comparison of demographic data and clinical characteristics of the groups according to &lt;180 and ≥180 days follow-up</strong>
DOI: 10.17909/tf21-h626
title: Blazars
DOI: 10.5281/zenodo.7552468
title: Dataset for the publication: Moisture-driven divergence in mineral-associated soil carbon persistence

description: This data accompanies the manuscript titled, "Moisture-driven divergence in mineral-associated soil carbon persistence". Descriptions of data sources and measurement methods are given in the manuscript.
DOI: 10.5281/zenodo.7552467
title: Dataset for the publication: Moisture-driven divergence in mineral-associated soil carbon persistence

description: This data accompanies the manuscript titled, "Moisture-driven divergence in mineral-associated soil carbon persistence". Descriptions of data sources and measurement methods are given in the manuscript.
DOI: 10.34683/sr1992
title: StoneRounds Case: SR1992
title: Stickler Syndrome

description: StoneRounds Case SR1992 was diagnosed with Stickler Syndrome likely caused by mutations in the gene: COL2A1.
DOI: 10.18434/mds2-2838
title: CCU Validation and Scoring Software
DOI: 10.6084/m9.figshare.21926124
title: Suplementary Table 3A and 3B

description: <strong>Table 3A. Comparison of demographic data and clinical characteristics of the groups according to ≤30 and &gt;30 days follow-up.</strong> <br> <strong>Table 3B. Comparison of demographic data and clinical characteristics of the groups according to &lt;180 and ≥180 days follow-up</strong>
DOI: 10.6084/m9.figshare.21926124.v1
title: Suplementary Table 3A and 3B

description: <strong>Table 3A. Comparison of demographic data and clinical characteristics of the groups according to ≤30 and &gt;30 days follow-up.</strong> <br> <strong>Table 3B. Comparison of demographic data and clinical characteristics of the groups according to &lt;180 and ≥180 days follow-up</strong>
DOI: 10.6084/m9.figshare.21823455.v3
title: The ReptileEvolution.com Project

description: Taxon exclusion is the number one problem currently vexing paleontology. The search for pterosaur, turtle, bat, snake, whale, reptile and tetrapod ancestors continues to unnecessarily befuddle paleontologists who continue to work from cherry-picked, textbook and traditional taxon lists that overlook and omit pertinent taxa. That’s why the large reptile tree (LRT), the nearly completely resolved cladogram at the heart of www.ReptileEvolution.com, includes 2186 taxa. Larger taxon numbers minimize taxon exclusion issues. Results indicate the simple act of adding taxa resolves all phylogenetic issues.
DOI: 10.5281/zenodo.7552575
title: Demonstration Upload

description: This is a demonstration upload.
DOI: 10.5281/zenodo.7552574
title: Demonstration Upload

description: This is a demonstration upload.
DOI: 10.6084/m9.figshare.21814788
title: Habitat-specific diversity in Central European birds

description: Bird species richness was highest in forest and urban habitat types, lower in grassland and wetland, and lowest in cropland. To investigate bird species richness patterns across different habitat types in Czechia, Central Europe. Data from a national breeding bird monitoring scheme in Czechia, based on mapping of positions of individual birds along transects, were used to express the number of species in habitat polygons. Each polygon was represented by one of the eight habitat types (coniferous, mixed and deciduous forest, cropland, grassland and other open habitat types, urban habitat, and wetland) obtained by detailed country-wide vegetation mapping. Species richness of individual polygons was related to polygon habitat type and area by linear mixed effects models, taking the surrounding land cover composition into account. Bird species richness was highest in forest, as predicted, and respective forest habitat types did not differ from each other. Urban habitat hosted a similar number of species as forest. Species richness varied greatly between different open habitat types: cropland was the most species-poor of all the habitat types considered, whereas grassland and other types of open habitats hosted significantly more species, albeit fewer than forests, and did not differ from wetland. Slopes of species-area relationships in respective habitat types largely followed the patterns in species richness. The observed patterns are partly driven by natural habitat characteristics, such as high vertical stratification of forest vegetation facilitating coexistence of a higher number of species. However, biogeography may also play a role, for example, and the relatively short time periods for colonization from Eastern European source areas may underpin lower bird species richness in grasslands. In addition, human interventions may drive the steep slope of the species-area relationship in forest, presumably caused by mosaic harvesting, as well as the shallow slope of this relationship in cropland and wetland, as a result of their intensive exploitation.
DOI: 10.6084/m9.figshare.21814788.v1
title: Habitat-specific diversity in Central European birds

description: Bird species richness was highest in forest and urban habitat types, lower in grassland and wetland, and lowest in cropland. To investigate bird species richness patterns across different habitat types in Czechia, Central Europe. Data from a national breeding bird monitoring scheme in Czechia, based on mapping of positions of individual birds along transects, were used to express the number of species in habitat polygons. Each polygon was represented by one of the eight habitat types (coniferous, mixed and deciduous forest, cropland, grassland and other open habitat types, urban habitat, and wetland) obtained by detailed country-wide vegetation mapping. Species richness of individual polygons was related to polygon habitat type and area by linear mixed effects models, taking the surrounding land cover composition into account. Bird species richness was highest in forest, as predicted, and respective forest habitat types did not differ from each other. Urban habitat hosted a similar number of species as forest. Species richness varied greatly between different open habitat types: cropland was the most species-poor of all the habitat types considered, whereas grassland and other types of open habitats hosted significantly more species, albeit fewer than forests, and did not differ from wetland. Slopes of species-area relationships in respective habitat types largely followed the patterns in species richness. The observed patterns are partly driven by natural habitat characteristics, such as high vertical stratification of forest vegetation facilitating coexistence of a higher number of species. However, biogeography may also play a role, for example, and the relatively short time periods for colonization from Eastern European source areas may underpin lower bird species richness in grasslands. In addition, human interventions may drive the steep slope of the species-area relationship in forest, presumably caused by mosaic harvesting, as well as the shallow slope of this relationship in cropland and wetland, as a result of their intensive exploitation.
DOI: 10.25390/caryinstitute.13022498
title: Cary Vegetation Study 1984 1985 UPLAND FIELDS STUDY

description: The repository contains data and notes from the 1985 survey of upland fields at the Cary Arboretum. The project was part of the Cary Vegetation Study of 1984-1985. For an overview of the project, see Cary Vegetation Study 1984 1985 OVERVIEW<br>
DOI: 10.25390/caryinstitute.13022498.v2
title: Cary Vegetation Study 1984 1985 UPLAND FIELDS STUDY

description: The repository contains data and notes from the 1985 survey of upland fields at the Cary Arboretum. The project was part of the Cary Vegetation Study of 1984-1985. For an overview of the project, see Cary Vegetation Study 1984 1985 OVERVIEW<br>
DOI: 10.25390/caryinstitute.13022498.v1
title: Cary Vegetation Study 1984 1985 UPLAND FIELDS STUDY

description: The repository contains data and notes from the 1985 survey of upland fields at the Cary Arboretum. The project was part of the Cary Vegetation Study of 1984-1985. For an overview of the project, see Cary Vegetation Study 1984 1985 OVERVIEW<br>
DOI: 10.15151/esrf-dc-1042968769
title: White beam DCT

description: First tests of white beam DCT on Al and Fe samples
DOI: 10.6084/m9.figshare.21342834
title: A three-gene phylogeny supports taxonomic rearrangements in the family Didymiaceae (Myxomycetes)

description: <strong>The dataset includes:</strong> The <strong>Supplementary Table 1</strong> with the list of specimens used for DNA extraction and sequencing and the list of sequences retrieved from GenBank The <strong>Concatenated alignment</strong> with 18S rDNA, COI, and EF1A sequences <strong>Partition file</strong> in RAxML format <strong>Three-gene phylogenetic tree </strong>in newick format. For details, see the original publication: https://link.springer.com/article/10.1007/s11557-022-01858-1