cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14788377
title: Advancing Real-time Infectious Disease Forecasting Using Large Language Models

description: Forecasting the short-term spread of an ongoing disease outbreak poses a challenge due to the complexity of contributing factors, some of which can be characterized through interlinked, multi-modality variables, and the intersection of public policy and human behavior. Our work introduces PandemicLLM, a framework with multi-modal Large Language Models (LLMs) that reformulates real-time forecasting of disease spread as a text reasoning problem, with the ability to incorporate real-time, complex, non-numerical information. This approach, through an AI-human cooperative prompt design and time series representation learning, encodes multi-modal data for LLMs. The model is applied to the COVID-19 pandemic, and trained to utilize textual public health policies, genomic surveillance, spatial, and epidemiological time series data, and is tested across all 50 states of the U.S. for a duration of 19 months. PandemicLLM opens avenues for incorporating various pandemic-related data in heterogeneous formats and exhibits performance benefits over existing models.
DOI: 10.5281/zenodo.14788491
title: Advancing Real-time Infectious Disease Forecasting Using Large Language Models

description: Forecasting the short-term spread of an ongoing disease outbreak poses a challenge due to the complexity of contributing factors, some of which can be characterized through interlinked, multi-modality variables, and the intersection of public policy and human behavior. Our work introduces PandemicLLM, a framework with multi-modal Large Language Models (LLMs) that reformulates real-time forecasting of disease spread as a text reasoning problem, with the ability to incorporate real-time, complex, non-numerical information. This approach, through an AI-human cooperative prompt design and time series representation learning, encodes multi-modal data for LLMs. The model is applied to the COVID-19 pandemic, and trained to utilize textual public health policies, genomic surveillance, spatial, and epidemiological time series data, and is tested across all 50 states of the U.S. for a duration of 19 months. PandemicLLM opens avenues for incorporating various pandemic-related data in heterogeneous formats and exhibits performance benefits over existing models.
DOI: 10.6084/m9.figshare.28329558
title: Additional file 1 of Mediating Mendelian randomization in the proteome identified potential drug targets for obesity-related allergic asthma

description: Supplementary Material 1: Supplementary Materials 1. The MR results of BMI and allergic asthma. Supplementary Materials 2. The MR results of plasma proteins and allergic asthma. Supplementary Materials 3. The MR results of BMI and plasma proteins. Supplementary Materials 4. The MR results of mediation factor plasma proteins and allergic asthma. Supplementary Materials 5. The results of drug-targeted MR
DOI: 10.6084/m9.figshare.28329563
title: Additional file 2 of Association between chronic obstructive pulmonary disease and osteoporosis: Mendelian randomization combined with bibliometric analysis

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28329560.v1
title: Additional file 1 of Association between chronic obstructive pulmonary disease and osteoporosis: Mendelian randomization combined with bibliometric analysis

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.28329560
title: Additional file 1 of Association between chronic obstructive pulmonary disease and osteoporosis: Mendelian randomization combined with bibliometric analysis

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.28329563.v1
title: Additional file 2 of Association between chronic obstructive pulmonary disease and osteoporosis: Mendelian randomization combined with bibliometric analysis

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28329575.v1
title: Additional file 2 of Impact of climate and human-induced fire on the Dongyuan Lake, Southern Taiwan during the last 1850 cal years BP

description: Additional file 2.
DOI: 10.6084/m9.figshare.28329575
title: Additional file 2 of Impact of climate and human-induced fire on the Dongyuan Lake, Southern Taiwan during the last 1850 cal years BP

description: Additional file 2.
DOI: 10.6084/m9.figshare.28329587
title: Additional file 4 of Genome-wide association mapping and genomic prediction analyses reveal the genetic architecture of grain yield and agronomic traits under drought and optimum conditions in maize

description: Supplementary Material 4: Supplementary Table S1. Detailed information about pedigree of 236 lines and groupings based on markers used in the study. Supplementary Table S2. Summary of SNPs distribution across the ten maize chromosomes. Supplementary Table S3. Significant QTNs identified for eight traits across multi-environment trials under optimum conditions using six multi-locus GWAS models. Supplementary Table S4. Significant QTNs identified for eight traits across multi-environment trials under drought conditions using six multi-locus GWAS models. Supplementary Table S5. Significant QTNs associated with eight traits under drought and optimum condition using Farm CPU GWAS model from GAPIT. Supplementary Table S6. Number of stable QTNs detected by at least two GWAS models for grain yield, flowering traits and other agronomic traits under drought and optimum conditions.
DOI: 10.6084/m9.figshare.28329587.v1
title: Additional file 4 of Genome-wide association mapping and genomic prediction analyses reveal the genetic architecture of grain yield and agronomic traits under drought and optimum conditions in maize

description: Supplementary Material 4: Supplementary Table S1. Detailed information about pedigree of 236 lines and groupings based on markers used in the study. Supplementary Table S2. Summary of SNPs distribution across the ten maize chromosomes. Supplementary Table S3. Significant QTNs identified for eight traits across multi-environment trials under optimum conditions using six multi-locus GWAS models. Supplementary Table S4. Significant QTNs identified for eight traits across multi-environment trials under drought conditions using six multi-locus GWAS models. Supplementary Table S5. Significant QTNs associated with eight traits under drought and optimum condition using Farm CPU GWAS model from GAPIT. Supplementary Table S6. Number of stable QTNs detected by at least two GWAS models for grain yield, flowering traits and other agronomic traits under drought and optimum conditions.
DOI: 10.6084/m9.figshare.28329642
title: Additional file 2 of Epigene functional diversity: isoform usage, disordered domain content, and variable binding partners

description: Additional file 2.
DOI: 10.6084/m9.figshare.28329645.v1
title: Additional file 3 of Epigene functional diversity: isoform usage, disordered domain content, and variable binding partners

description: Additional file 3.
DOI: 10.6084/m9.figshare.28329642.v1
title: Additional file 2 of Epigene functional diversity: isoform usage, disordered domain content, and variable binding partners

description: Additional file 2.
DOI: 10.6084/m9.figshare.28329645
title: Additional file 3 of Epigene functional diversity: isoform usage, disordered domain content, and variable binding partners

description: Additional file 3.
DOI: 10.6084/m9.figshare.28329651.v1
title: Additional file 4 of Epigene functional diversity: isoform usage, disordered domain content, and variable binding partners

description: Additional file 4.
DOI: 10.6084/m9.figshare.28329654.v1
title: Additional file 5 of Epigene functional diversity: isoform usage, disordered domain content, and variable binding partners

description: Additional file 5.
DOI: 10.6084/m9.figshare.28329651
title: Additional file 4 of Epigene functional diversity: isoform usage, disordered domain content, and variable binding partners

description: Additional file 4.
DOI: 10.6084/m9.figshare.28329654
title: Additional file 5 of Epigene functional diversity: isoform usage, disordered domain content, and variable binding partners

description: Additional file 5.
DOI: 10.6084/m9.figshare.28329657
title: Additional file 6 of Epigene functional diversity: isoform usage, disordered domain content, and variable binding partners

description: Additional file 6.
DOI: 10.6084/m9.figshare.28329657.v1
title: Additional file 6 of Epigene functional diversity: isoform usage, disordered domain content, and variable binding partners

description: Additional file 6.
DOI: 10.6084/m9.figshare.28329660
title: Additional file 7 of Epigene functional diversity: isoform usage, disordered domain content, and variable binding partners

description: Additional file 7.
DOI: 10.6084/m9.figshare.28329660.v1
title: Additional file 7 of Epigene functional diversity: isoform usage, disordered domain content, and variable binding partners

description: Additional file 7.
DOI: 10.6084/m9.figshare.28329663
title: Additional file 8 of Epigene functional diversity: isoform usage, disordered domain content, and variable binding partners

description: Additional file 8.
DOI: 10.6084/m9.figshare.28329663.v1
title: Additional file 8 of Epigene functional diversity: isoform usage, disordered domain content, and variable binding partners

description: Additional file 8.
DOI: 10.6084/m9.figshare.28329666
title: Additional file 9 of Epigene functional diversity: isoform usage, disordered domain content, and variable binding partners

description: Additional file 9.
DOI: 10.6084/m9.figshare.28329666.v1
title: Additional file 9 of Epigene functional diversity: isoform usage, disordered domain content, and variable binding partners

description: Additional file 9.
DOI: 10.15468/dl.enpm9n
title: Occurrence Download

description: A dataset containing 22181460 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "TaxonKey is Aves",
 "Year 1000-2025"
 ]
}

 The dataset includes 22181460 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007581-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xrndx
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Matsucoccus matsumurae (Kuwana, 1905)"
 ]
}

 The dataset includes 41 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007582-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.se5987
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Matsucoccus matsumurae Cockerell, 1909"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007583-250127130748423/datasets/export for details.
DOI: 10.15468/dl.chbckj
title: Occurrence Download

description: A dataset containing 22323 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Artemisia annua L."
 ]
}

 The dataset includes 22323 records from 636 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007584-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v9ggky
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hemerocallis ×hybrida Bergmans"
 ]
}

 The dataset includes 12 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007586-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfttgj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paraperonospora artemisiae-annuae (L.Ling & M.C.Tai) Constant."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007587-250127130748423/datasets/export for details.
DOI: 10.15468/dl.bd99ed
title: Occurrence Download

description: A dataset containing 65311 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hofmannophila pseudospretella Stainton, 1849"
 ]
}

 The dataset includes 65311 records from 203 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007585-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2024-02.3036724/2544451
title: Data for EMSL Project 60580 from February 2024
DOI: 10.25582/data.2024-02.3036726/2544452
title: Data for EMSL Project 60580 from February 2024
DOI: 10.25582/data.2024-02.3036727/2544453
title: Data for EMSL Project 60580 from February 2024
DOI: 10.25582/data.2024-02.3036733/2544454
title: Data for EMSL Project 60580 from February 2024
DOI: 10.25582/data.2024-02.3036734/2544455
title: Data for EMSL Project 60580 from February 2024
DOI: 10.25582/data.2024-02.3036735/2544456
title: Data for EMSL Project 60580 from February 2024
DOI: 10.25582/data.2024-02.3036736/2544457
title: Data for EMSL Project 60580 from February 2024
DOI: 10.25582/data.2024-02.3036737/2544458
title: Data for EMSL Project 60580 from February 2024
DOI: 10.15468/dl.nqj7mu
title: Occurrence Download

description: A dataset containing 9790 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Myocastoridae",
 "Year 2020-2025"
 ]
}

 The dataset includes 9790 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010183-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.av554k
title: Occurrence Download

description: A dataset containing 9790 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Myocastoridae",
 "Year 2020-2025"
 ]
}

 The dataset includes 9790 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010184-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8cgu26
title: Occurrence Download

description: A dataset containing 912 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bistorta amplexicaulis",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 912 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010185-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jud2yb
title: Occurrence Download

description: A dataset containing 14947 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polygala myrtifolia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 14947 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010186-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbk9gy
title: Occurrence Download

description: A dataset containing 18365 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schinus molle",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 18365 records from 293 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010188-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17033622
title: ICD-10 Cardiopulmonary Perioperative Outcomes Code Set (Supplementary Dataset)

description: This dataset contains the ICD-10-CM and ICD-10-PCS diagnostic and procedural codes used to define cardiopulmonary outcomes in perioperative research. The code set was developed for analyses of perioperative exposure to environmental stressors (e.g., air pollution, extreme heat) and bundled into composite cardiopulmonary outcome definitions, as well as for selected sub-analyses of individual outcomes.

Contents:  PDF table listing ICD-10-CM and ICD-10-PCS codes for cardiopulmonary outcomes with categories including pneumonia, respiratory failure, pulmonary embolism, myocardial infarction, heart failure, arrhythmias, surgical complications, and related outcomes.  N.B. this dataset does not contain patient-level data.  The dataset is provided to enhance transparency and reproducibility of outcome definitions in perioperative and environmental epidemiology research.

Users may adapt or extend this code set for related studies.
DOI: 10.5281/zenodo.17033623
title: ICD-10 Cardiopulmonary Perioperative Outcomes Code Set (Supplementary Dataset)

description: This dataset contains the ICD-10-CM and ICD-10-PCS diagnostic and procedural codes used to define cardiopulmonary outcomes in perioperative research. The code set was developed for analyses of perioperative exposure to environmental stressors (e.g., air pollution, extreme heat) and bundled into composite cardiopulmonary outcome definitions, as well as for selected sub-analyses of individual outcomes.

Contents:  PDF table listing ICD-10-CM and ICD-10-PCS codes for cardiopulmonary outcomes with categories including pneumonia, respiratory failure, pulmonary embolism, myocardial infarction, heart failure, arrhythmias, surgical complications, and related outcomes.  N.B. this dataset does not contain patient-level data.  The dataset is provided to enhance transparency and reproducibility of outcome definitions in perioperative and environmental epidemiology research.

Users may adapt or extend this code set for related studies.
DOI: 10.15468/dl.23w5wf
title: Occurrence Download

description: A dataset containing 997 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Larrea cuneifolia"
 ]
}

 The dataset includes 997 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010177-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.px8c46
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Koenigia campanulata",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010190-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3djqq2
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Koenigia campanulata",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010191-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9tgj2
title: Occurrence Download

description: A dataset containing 604871 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Anemone nemorosa)"
 ]
}

 The dataset includes 604871 records from 1708 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010156-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gbd4u6
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ticherra acte (Moore, 1857)",
 "Year 1501-2022"
 ]
}

 The dataset includes 61 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109471-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lzvbi6
title: Occurrence Download

description: A dataset containing 1657 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elephas maximus Linnaeus, 1758"
 ]
}

 The dataset includes 1657 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029144-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.is5pns
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myrceugenia cucullata D.Legrand"
 ]
}

 The dataset includes 216 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005737-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ny37hj
title: Occurrence Download

description: A dataset containing 2682 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-9.99536 43.64429,-11.57739 38.12476,-7.13892 34.71899,-2.65649 34.69702,5.3855 37.88306,5.3855 43.00269,-1.64575 45.0022,-1.82153 43.66626,-3.64526 44.50122,-9.99536 43.64429))",
 "TaxonKey is Trachemys scripta (Thunberg In Schoepff, 1792)"
 ]
}

 The dataset includes 2682 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003961-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmtbgy
title: Occurrence Download

description: A dataset containing 1793 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 {
 "or" : [
 "StateProvince is ciudad de mexico",
 "StateProvince is mexico df",
 "StateProvince is mexico distrito federal",
 "StateProvince is méxico / distrito federal",
 "StateProvince is méxico (incl. distrito federal)",
 "StateProvince is df"
 ]
 }
 ]
}

 The dataset includes 1793 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005737-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.