cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/6s59gbxh6p.1
title: Survey of energy system modelling tools - Results

description: This repository hosts the results of the survey of energy system modelling tools conducted by the Sustainable Energy group at Aalborg University. The results of this survey are further analysed and referenced in the following publication: Chang, M; Thellufsen, J.Z.; Zakeri, B.; Pickering, B.; Pfenninger, S.; Lund, H.; Østergaard, P.A. (2021) "Trends in tools and approaches for modelling the energy transition", Applied Energy 290, 116731, DOI: 10.1016/j.apenergy.2021.116731 https://doi.org/10.1016/j.apenergy.2021.116731 Highlights • Survey of current trends and challenges in energy system modelling tools (N = 54). • Tool features, linkages, user accessibility and policy application were reviewed. • Growing coverage of cross-sectoral synergies, open access, and improved temporal detail. • Challenges in representing high-resolution energy demand in all sectors. • Key issues remain in understanding tool coupling, accessibility & perceived policy-relevance.
DOI: 10.18462/iir.nh3-co2.2021.0023
title: Experimental investigation of enhanced CO2 refrigeration systems at varying operating conditions.
DOI: 10.3334/cdiac/atg.002
title: Methane, Nonmethane Hydrocarbons, Alkyl Nitrates, and Chlorinated Carbon Compounds including 3 Chlorofluorocarbons (CFC-11, CFC-12, and CFC-113) in Whole-air Samples (April 1979 – December 2012)

description: Whole-air samples are collected in conditioned, evacuated, 2-L stainless steel canisters; each canister is filled to ambient pressure over a period of about 1 minute (approximately 20 seconds to 2 minutes). These canisters are returned to the University of California at Irvine for chromatographic analysis.
DOI: 10.6084/m9.figshare.19665810.v1
title: Col-0 (For zyp1 comparison)

description: Wild-type (col0) microscopy data for The synaptonemal complex controls cis-versus trans-interference in coarsening-based meiotic crossover patterning
DOI: 10.6084/m9.figshare.19783624
title: A neural mechanism for detecting object motion during self-motion

description: This dataset (KimEtAl2022_eLife.zip) consists of 106 recording sessions used in the paper. Each recording session is saved in HDF5 file format and contains spiking timestamps of a single neuron (ms).
DOI: 10.6084/m9.figshare.19976741
title: Supplementary Material for: Renal Megalin mRNA Downregulation Is Associated with CKD Progression in IgA Nephropathy

description: <b><i>Introduction:</i></b> Megalin plays an important role in proximal tubule uptake of filtered proteins. Downregulation and dysfunction of megalin were previously demonstrated in IgA nephropathy (IgAN); however, its relationship to IgAN progression remains unclear. <b><i>Methods:</i></b> We measured renal megalin mRNA and miR-148b, previously identified as a regulator of megalin, in a retrospective cohort of 417 IgAN patients at the time of biopsy, and evaluated their associations with chronic kidney disease (CKD) progression event, defined as end-stage renal disease or ≥40% decline in estimated glomerular filtration rate, using Cox proportional hazard models. Risk classification statistics were calculated for CKD progression. <b><i>Results:</i></b> During a median follow-up of 43 months, 121 (29.0%) patients reached the CKD progression event. Patients in the highest tertile of renal megalin mRNA had a lower risk for CKD progression than in the lowest tertile (hazard ratio (HR): 0.407, 95% confidence interval (CI) 0.231–0.719; <i>p</i> = 0.002). Log megalin mRNA was independent and negatively associated with CKD progression in IgAN (HR: 0.529, 95% CI 0.377–0.742; <i>p</i> &lt; 0.001). The addition of renal megalin mRNA to a model with traditional risk factors improved risk prediction of disease progression (C statistic from 0.76 to 0.80; integrated discrimination index: 0.04 [95% CI: 0.02–0.07]). Moreover, patients in the highest tertile of renal miR-148b had a 2.3-fold higher risk for CKD progression compared with those in the lowest tertile. <b><i>Conclusions:</i></b> Lower renal megalin mRNA levels were associated with a greater risk of CKD progression in IgAN independent of clinical and pathological characteristics, suggesting that renal megalin could be an important prognostic factor for IgAN.
DOI: 10.6084/m9.figshare.20183351.v1
title: McGregor_et_al_Figure_4_Source_data_3.mat

description: Data for producing Figure 4d from Shared mechanisms of auditory and non-auditory vocal learning in the songbird brain.
DOI: 10.6084/m9.figshare.21989732
title: pch2 data

description: Data from <em>pch2-1 cells for</em> Coarsening dynamics can explain meiotic crossover patterning in both the presence and absence of the synaptonemal complex
DOI: 10.6084/m9.figshare.22111154
title: Supplementary Material for: Clinical Characteristics and Outcomes of Generalized Pustular Psoriasis (GPP) Flares

description: Background: Generalized pustular psoriasis (GPP) is a rare, neutrophilic skin disease that can become life-threatening if flares are untreated. There are limited data describing the characteristics and clinical course of GPP disease flares with current treatment options. Objective: To describe the characteristics and outcomes of GPP flares using historical medical information from patients enrolled in the Effisayil™ 1 trial. Methods: Investigators collected retrospective medical data characterizing patients’ GPP flares prior to clinical trial enrollment. Data on overall historical flares were collected, as well as information on patients’ typical, most severe, and longest past flares. This included data on systemic symptoms, flare duration, treatment, hospitalization, and time to clearance of skin lesions. Results: In this cohort (N=53), patients with GPP experienced a mean of 3.4 flares per year. Flares were painful, associated with systemic symptoms, and often triggered by stress, infections, or treatment withdrawal. Resolution of flares was longer than 3 weeks in 57.1%, 71.0%, and 85.7% of documented (or identified) typical, most severe, and longest flares, respectively. GPP flares led to patient hospitalization in 35.1%, 74.2%, and 64.3% of patients for their typical, most severe, and longest flares, respectively. For the majority of patients, pustules took up to 2 weeks to clear for a typical flare and 3–8 weeks to clear for the most severe and longest flares. Conclusion: Our findings highlight that current treatment options are slow to control GPP flares and provide context for assessing the efficacy of new therapeutic strategies in patients with a GPP flare.
DOI: 10.6084/m9.figshare.23938503
title: A DNA nanodevice for mapping sodium at single organelle resolution - raw data

description: Cellular sodium ion (Na<sup>+</sup>) homeostasis is integral to organism physiology. Our current understanding of Na<sup>+</sup> homeostasis is largely limited to Na<sup>+</sup> transport at the plasma membrane. Organelles may also contribute to Na<sup>+</sup> homeostasis, however, the direction of Na<sup>+</sup> flow across organelle membranes is unknown because Na<sup>+</sup> cannot be imaged. Here, we report a pH-independent, organelle-targetable, ratiometric probe that reports lumenal Na<sup>+</sup>. It is a DNA nanodevice containing a Na<sup>+</sup>-sensitive fluorophore, a reference dye and an organelle targeting domain. By measuring Na<sup>+</sup> at single endosome resolution in mammalian cells and in <i>C. elegans</i>, we discover that lumenal<i> </i>Na<sup>+</sup> levels in each stage of the endolysosomal pathway exceed cytosolic levels and decrease as endosomes mature. Further, we find that lysosomal Na<sup>+</sup> levels in nematodes are modulated by the Na<sup>+</sup>/H<sup>+</sup> exchanger NHX-5 in response to salt stress. The ability to image sub-cellular Na<sup>+</sup> will unveil mechanisms of Na<sup>+</sup> homeostasis at an increased level of cellular detail.
DOI: 10.5281/zenodo.7011292
title: The Virtual Macaque Brain: A macaque connectome for large-scale network simulations in TheVirtualBrain

description: A whole-cortex macaque structural connectome constructed from a combination of axonal tract-tracing and diffusion-weighted imaging data. Created for modeling brain dynamics using TheVirtualBrain platform. Website: thevirtualbrain.org
DOI: 10.3886/icpsr08467
title: British Social Attitudes Survey, 1984
title: Archival Version

description: This survey is part of a continuing series designed to monitor trends in a wide range of social attitudes in Great Britain. The British Social Attitudes Survey (BSA) is similar in purpose to the General Social Survey carried out by the National Opinion Research Center (NORC) in the United States. The BSA questionnaire had two parts, one administered by an interviewer and the other completed by the respondent. As in the past, the 1984 interview questionnaire contained a number of "core" questions covering the major topic areas of defense, the economy, labor market participation, and the welfare state. The 1984 self-enumerated questionnaire was devoted to a series of questions on a range of social, economic, political, and moral issues. Topics that received attention include: (1) media, politics, and international affairs, (2) economic expectations and evaluations and labor market participation, (3) social expenditure, welfare state issues, the National Health Service, and education, and (4) social class, religion, racial prejudice, gender issues, and public and private morality. Additional demographic data gathered included age, gender, education, occupation, household income, marital status, social class, and religious and political affiliations.
description: Datasets: 
 
 DS1: Dataset
description: British Social Attitudes Survey Series
description: In 1999, Social and Community Planning Research (SCPR) became the National Centre for Social Research.
Under agreement with the UKDA, the data are disseminated as they were received, without additional processing by ICPSR. This agreement also provides that ICPSR will disseminate the data only for use within its member institutions. Persons from non-member institutions may request these data directly from the UKDA.
The data are provided as an SPSS portable file.
 The documentation was converted to Portable Document Format (PDF) by the UKDA. The PDF documentation can also be downloaded from the UKDA Web site at http://www.data-archive.ac.uk/. 
The formats for some variables in the SPSS portable file (e.g., WHYGO1) are not wide enough to accommodate the missing value specifications. For some procedures SPSS will display these missing values as asterisks. Users can widen the formats to display the actual missing value codes.
description: Adults (18 or over) living in private households in Great Britain whose addresses were included in the electoral registers.
description: Multistage stratified random sample consisting of four stages. The sample was drawn from the electoral register.
DOI: 10.4225/25/555c181cc0eae
title: Major crustal boundaries of Australia

description: The 'Major crustal boundaries of Australia' map synthesizes more than 30 years of acquisition of deep seismic reflection data across Australia, where major crustal-scale breaks have been interpreted in the seismic reflection profiles, often inferred to be relict sutures between different crustal blocks. The widespread coverage of the seismic profiles now provides the opportunity to construct a map of major crustal boundaries across Australia. Starting with the locations of the crustal breaks identified in the seismic profiles, geological (e.g. outcrop mapping, drill hole, geochronology, isotope) and geophysical (e.g. gravity, aeromagnetic, magnetotelluric) data are used to map the crustal boundaries, in map view, away from the seismic profiles. For some of these boundaries, a high level of confidence can be placed on the location, whereas the location of other boundaries can only be considered to have medium or low confidence. In other areas, especially in regions covered by thick sedimentary successions, the locations of some crustal boundaries are essentially unconstrained. 
The 'Major crustal boundaries of Australia' map shows the locations of inferred ancient plate boundaries, and will provide constraints on the three dimensional architecture of Australia. It allows a better understanding of how the Australian continent was constructed from the Mesoarchean through to the Phanerozoic, and how this evolution and these boundaries have controlled metallogenesis. It is best viewed as a dynamic dataset, which will have to be further refined and updated as new information such as seismic reflection data becomes available.
DOI: 10.5281/zenodo.7621300
title: Targeted Balloon Observations of Stratosphere-to-Troposphere Transport From a Mesoscale Convective System

description: Data used for analysis in the JGR-Atmospheres Paper Targeted Balloon Observations of Stratosphere-to-Troposphere Transport From a Mesoscale Convective System. Files include ozonesonde data, gridded radar data, and backward trajectory calculations.
DOI: 10.6084/m9.figshare.22664470
title: Supplementary Material for: Melatonin regulates lncRNA NEAT1/miR-138-5p/HIF-1α axis through MOV10 to affect acid-related esophageal epithelial cell pyroptosis

description: Introduction: Acid-related inflammatory damage to the esophageal epithelium is a key component in the development of gastroesophageal reflux disease (GERD). Melatonin (MT) is considered as a potential therapeutic agent, but its molecular mechanism is unknown. Methods: The expression of HIF-1α and pyroptosis-related genes (NLRP3, Caspase-1, IL-1β, and IL-18) was analyzed using bioinformatics methods in GSE63401 and validated using qRT-PCR and WB in a HEEC inflammation model induced by deoxycholic acid (DCA). Hoechst 33342/PI double staining was used to assess the level of pyroptosis, and the effect of MT treatment was observed. The miRDB, TarBase, miRcode, miRNet, and ENCORI databases were used to predict the lncRNA targeting HIF-1α and the RNA-binding protein (RBP) interacting with the lncRNA. Results: The expressions of MOV10, lncRNA NEAT1, HIF-1α, and pyroptosis-related genes were up-regulated, while the expression of miR-138-5p was down-regulated in acidic DCA-induced HEEC inflammation. MOV10 may bind to lncRNA NEAT1 and stabilize its expression, while lncRNA NEAT1 up-regulates the expression of HIF-1α by adsorbing miR-138-5p to activate the NLRP3 inflammasome. However, MT pretreatment can significantly inhibit these processes. Conclusions: MOV10-lncRNA NEAT1/ miR-138-5p/ HIF-1α/ NLRP3 axis plays a crucial role in acid-related esophageal epithelial inflammatory injury, and MT may exert an esophageal protective effect by inhibiting the pathway.
DOI: 10.6084/m9.figshare.24151850
title: Accumulation of Lead and Nutrients in Soybean and Sorghum Cultivated in Lead-Affected Tropical Soils

description: Lead is a potentially toxic chemical element, being responsible for many deleterious effects in living organisms. Therefore, understanding its dynamics and influence on plant growth is relevant for food security. The influence of Pb doses on nutrient accumulation in sorghum and soybean in two tropical soils with different buffering capacities was tested in a greenhouse study with four independent experiments (one per species/soil combination). The hypothesis was that the presence of Pb in soil decreases the accumulation of nutrients in soybean and sorghum plants. Soybean cultivated in a Typic Hapludox (TH) and sorghum, cultivated in both a Rhodic Acrudox (RA) and a TH, received 0, 200, 400, 800, 1200, 1600, 2200, and 2800 mg/kg of Pb, while soybean cultivated in RA received 0, 200, 400, 800, and 1600 mg/kg of Pb. Seeds were sown 24 h after application of Pb. Plants were harvested 21 days after the emergence of at least 50% of plants from the control treatment (approximately 30 days in total). Lead, macro, and micronutrient contents were determined in the shoot dry matter (SDM), and bioavailable Pb in soil was assessed by Mehlich-1. In general, TH allowed greater Pb uptake by plants, due to its lower buffering capacity. Soybean was the most affected crop with decreasing concentrations of N, K, Mg, and Ca, the latter was especially affected, with deficiency symptoms being observed. Effects on a longer time-scale are unknown, since significant decreases in nutrient contents were observed.
DOI: 10.6084/m9.figshare.24151850.v1
title: Accumulation of Lead and Nutrients in Soybean and Sorghum Cultivated in Lead-Affected Tropical Soils

description: Lead is a potentially toxic chemical element, being responsible for many deleterious effects in living organisms. Therefore, understanding its dynamics and influence on plant growth is relevant for food security. The influence of Pb doses on nutrient accumulation in sorghum and soybean in two tropical soils with different buffering capacities was tested in a greenhouse study with four independent experiments (one per species/soil combination). The hypothesis was that the presence of Pb in soil decreases the accumulation of nutrients in soybean and sorghum plants. Soybean cultivated in a Typic Hapludox (TH) and sorghum, cultivated in both a Rhodic Acrudox (RA) and a TH, received 0, 200, 400, 800, 1200, 1600, 2200, and 2800 mg/kg of Pb, while soybean cultivated in RA received 0, 200, 400, 800, and 1600 mg/kg of Pb. Seeds were sown 24 h after application of Pb. Plants were harvested 21 days after the emergence of at least 50% of plants from the control treatment (approximately 30 days in total). Lead, macro, and micronutrient contents were determined in the shoot dry matter (SDM), and bioavailable Pb in soil was assessed by Mehlich-1. In general, TH allowed greater Pb uptake by plants, due to its lower buffering capacity. Soybean was the most affected crop with decreasing concentrations of N, K, Mg, and Ca, the latter was especially affected, with deficiency symptoms being observed. Effects on a longer time-scale are unknown, since significant decreases in nutrient contents were observed.
DOI: 10.17632/8z9z7nfj34.1
title: "Efficacy of Dual Cervical Sensitizers vs. Single Agents for Labor Induction in Late Third Trimester TOLAC with Intrauterine Fetal Demise: A Randomized Controlled Trial"

description: This is a data set accrued from a multi-arm randomized controlled trial (RCT) where participants received one of the three regimes- single agent oral Mifepristone 200mg, intracervical Foley’s catheter (16 Fr size, ﬁlled with 40 ml normal saline after intracervical instillation) and combination regime consisting of both used simultaneously. Number of women undergoing vaginal birth within 48 hours of induction (VB48) was the primary outcome compared between groups.
DOI: 10.5281/zenodo.7924815
title: Groundwater is a globally-threatened keystone ecosystem

description: Global maps of groundwater diversity, interactions between groundwater and surface water and global surface diversity linked into two maps.
DOI: 10.5281/zenodo.7924816
title: Groundwater is a globally-threatened keystone ecosystem

description: Global maps of groundwater diversity, interactions between groundwater and surface water and global surface diversity linked into two maps.
DOI: 10.5517/ccdc.csd.cc2g3pt3
title: CCDC 2267675: Experimental Crystal Structure Determination

description: Related Article: Katelyn M. Kitzinger, Jeffrey S. Johnson|2023|Org.Lett.|25|7446|doi:10.1021/acs.orglett.3c03100
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g6mkw
title: CCDC 2270488: Experimental Crystal Structure Determination

description: Related Article: Mingshuai Zhang, Longkun Chen, Haifeng Sun, Zhuoyuan Liu, Jiuzhong Huang, Fuchao Yu|2023|Org.Lett.|25|7298|doi:10.1021/acs.orglett.3c02515
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2grzhq
title: CCDC 2287164: Experimental Crystal Structure Determination

description: Related Article: Neha Jha, Subhadip Mondal, Manmohan Kapur|2023|Chem.Commun.|59|12491|doi:10.1039/D3CC04135B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gs10b
title: CCDC 2287211: Experimental Crystal Structure Determination

description: Related Article: Frederick Degroote, Bram Denoo, Bram Ryckaert, Brenda Callebaut, Kristof Van Hecke, Jan Hullaert, Johan M. Winne|2023|Org.Biomol.Chem.|21|8117|doi:10.1039/D3OB01273E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27dtp5
title: CCDC 2067907: Experimental Crystal Structure Determination

description: Related Article: Feixue Xue, Chang-Jiang Yang, Tong Tang, Zhengjie He|2023|Org.Biomol.Chem.|21|8176|doi:10.1039/D3OB01199B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24248944
title: RepEnTools-Galaxy instructions, workflows, and spreadsheet

description: <i>RepEnTools</i> - Galaxy instructions, workflows, and spreadsheetWe include the spreadsheet necessary for using RepEnTools in Galaxy, the workflows "Part 1" and "Part 2", step-by-step instructions for simple use (basic), and an illustration for them. FAQs and special Considerations when using RepEnTools are discussed in the corresponding pdf files.A workflow for single-end FASTQ data is also included, please read the FAQ before use.We also include the workflow "Part 3" , which we used to generate the RE-specific heatmaps and profile visualisations in our publication, detailed step-by-step instructions for use (extended), and the matching illustration.
DOI: 10.18419/darus-1686/1
title: NMR Spectra of 2C.zip

description: :unav
DOI: 10.18419/darus-1686/2
title: NMR Spectra of 8C.zip

description: :unav
DOI: 10.18419/darus-1686/3
title: NMR Spectra of 7C.zip

description: :unav
DOI: 10.18419/darus-1686/4
title: NMR Spectra of 9C.zip

description: :unav
DOI: 10.18419/darus-1686/5
title: NMR Spectra of 1C.zip

description: :unav
DOI: 10.18419/darus-1686/6
title: NMR Spectra of 6C.zip

description: :unav
DOI: 10.18419/darus-1686/7
title: NMR Spectra of 13.zip

description: :unav
DOI: 10.18419/darus-1686/8
title: NMR spectra of 5C.zip

description: :unav
DOI: 10.18419/darus-1686/9
title: NMR Spectra of 4C.zip

description: :unav