cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.776922.v2
title: Membrane Environment Imposes Unique Selection Pressures on Transmembrane Domains of G Protein-Coupled Receptors

description: G protein-coupled receptors (GPCRs) represent one of the largest families of membrane proteins in eukaryotes. In Metazoa, GPCRs play significant roles in a wide variety of cri6cal physiological func6ons, including percep6on and metabolism, and over 40% of pharmaceu6cals target GPCRs [1]. Despite their clear func6onal importance, few studies have examined their evolu6on, or indeed the evolu6on of membrane proteins, which account for up to 35% of an organism’s proteome. Here, we present a large-scale computa6onal study of the molecular evolu6on of over 350 mammalian GPCRs, including up to 27 species per gene [2]. We calculated an evolu6onary rate, dN/dS, or ω, using the HyPhy batch language [4] as well as rela6ve solvent accessibility (RSA) for receptors with available structures at each residue.
DOI: 10.17632/55spw7sw6c
title: The Metamorphosis Formula

description: This research presents the "Metamorphosis Formula," a theoretical framework dedicated to analyzing structural and morphological transformations in language, influenced by technological advancements and the demands of modern communication. A central aspect is the development of algorithmic grammar theory, which applies mathematical formulas to study linguistic changes, including those induced by prefixes, infixes, and suffixes. A key innovation is the use of chromatic algorithms to visualize grammatical information through color coding, enhancing clarity.
The research integrates concepts such as the grammatical map and the geometric architecture of information expression. It examines grammatical transformations at both national and international levels, focusing on the adaptation of grammatical elements across diverse languages. The study analyzes the role of parentheses in grammatical structures and the adaptation of word roots. Advanced formulas are developed, including the tone formula and the grammatical time formula, addressing linguistic phenomena such as addition, elimination, and fusion. These are integrated into a mathematical expression framework to model grammatical agreement.
The research investigates the outcomes of fusion and conjunction processes in grammatical elements, analyzing relationships such as determinant and determined and theme and rheme. These relationships are visually represented within a mathematical system, offering a new perspective on linguistic structures. The study examines the processes of information distribution, addressing their morphological and syntactic values. The findings emphasize the utility of color coding for facilitating the rapid comprehension of grammatical information, with significant implications for education and natural language processing.
A key focus of the study is its reliance on human creativity and ethical judgment, which are essential for developing innovative linguistic theories that artificial intelligence (AI) cannot achieve independently. By employing complex algorithmic formulas, the research analyzes the transformations of language, highlighting the importance of interdisciplinary knowledge. The study underscores the relevance of contextual understanding and ethical considerations, where human judgment is crucial for interpreting results and making informed decisions.
DOI: 10.17632/tn8fdxy7br
title: Data for: Anxiety and coping strategies among nursing students during the covid-19 pandemic.

description: This is SPSS file including the data of the survey on 215 students, as explained in the manuscript.
DOI: 10.6084/m9.figshare.22559956.v1
title: Supplementary Material for: Rectal adenocarcinoma presenting as a perirectal abscess

description: Classic symptoms of rectal cancer (RC) such as hematochezia, tenesmus, rectal pain, and bowel habit changes are well known but can be non-specific and misdiagnosed. Rare presentations, in combination with these conventional symptoms, can occur warranting a higher degree of clinical suspicion. Here we report a case of rectal adenocarcinoma presenting as a perirectal abscess. A 52-year-old male with uncontrolled diabetes mellitus presented with a two-year and two-month history of rectal bleeding and changes in bowel habits, respectively, which were attributed to other conditions. He initially presented with left buttock pain and severe sepsis. Subsequent workup for suspected Fournier’s gangrene and perirectal abscess led to the discovery of a rectal adenocarcinoma (pT4N0M0, stage IIB/C). A combination of debridement, antibiotic therapy, neoadjuvant chemoradiation, and abdominoperineal resection resulted in improvement of the patient’s condition and remission. In conclusion, rare presentations of RC, such as a perirectal abscess, especially if present in conjunction with conventional RC symptomology, may necessitate the workup of RC.
DOI: 10.6084/m9.figshare.29127846.v1
title: Probabbility distribution, T = 2.5 K. from Surface photoelectric effect by twisted photons as a source of twisted electrons

description: Code for numerical computation of the data that is presented in Table 1 and Fig. 1 of the manuscript.
DOI: 10.17632/pg8s42f7b5
title: Li-ion battery voltage data under ripple current excitation

description: Li-ion battery voltage data under high frequency ripple current excitation. The naming principle for individual files is "HF current frequency - SOC of the cell at the beginning of the data - SOC of the cell at the end of the data". data is truncated from the full data, so the average current does not start at 0.The data is a mat file, which is the standard format for data storage in matlab.
DOI: 10.17632/w9xfz56txv
title: MILimbEEG: An EEG Signals Dataset based on Upper and Lower Limb Task During the Execution of Motor and Motorimagery Tasks

description: In this work, an experimental methodology for the acquisition of EEG signals from volunteer subjects was developed. The volunteers are colleagues and research fellows from ESPOL and patients of the Hospital Luis Vernaza for participating as test subjects.
DOI: 10.6084/m9.figshare.16616326.v1
title: Supplementary Material for: Temporal Trends in the Severity and Mortality of Neonatal Hypoxic-Ischemic Encephalopathy in the Era of Hypothermia

description: <b><i>Introduction:</i></b> There is a paucity of studies examining temporal trends in the incidence and mortality of moderate-to-severe hypoxic-ischemic encephalopathy (HIE) during the last decade of therapeutic hypothermia (TH). <b><i>Methods:</i></b> Multicenter cross-sectional study of all infants ≥35 weeks gestational age diagnosed with moderate-to-severe HIE within 6 h of birth in an extensive region of Spain between 2011 and 2019, in order to detect trend changes over time in the (1) annual incidence, (2) severity of neurological and systemic organ involvement, and (3) neonatal death from HIE. <b><i>Results:</i></b> Annual incidence rate of moderate-to-severe HIE was 0.84 (95% confidence interval [CI] 0.7–0.97) per 1,000 births, without trend changes over time (<i>p</i> = 0.8), although the proportion of severe HIE infants showed an average annual decline of 0.86 points (95% CI 0.75–0.98). There were 102 (70%) infants diagnosed with moderate HIE and 44 (30%) with severe HIE. TH was offered to 139/146 (95%) infants. Infants with clinical and/or electrical seizures showed a decreasing trend from 56 to 28% (<i>p</i> = 0.006). Mortality showed a nonstatistically significant decline (<i>p</i> = 0.4), and the severity of systemic damage showed no changes (<i>p</i> = 0.3). Obstetric characteristics remained unchanged, while higher perinatal pH values (<i>p</i> = 0.03) and Apgar scores (<i>p</i> = 0.05), and less need for resuscitation (<i>p</i> = 0.07), were found over time. <b><i>Conclusion:</i></b> The annual incidence of moderate-to-severe HIE has stabilized at around 1 per 1,000 births, with a temporal trend toward a decrease in severe HIE infants and a slight decline of mortality. No association was found between temporal trends and changes in perinatal/obstetric characteristics over time.
DOI: 10.6084/m9.figshare.21843330.v4
title: Promotion

description: This repository hosts data for reproducing results in the paper "The Gender Gap in Scholarly Self-Promotion on Social Media".
DOI: 10.6084/m9.figshare.22236949.v1
title: Cellular barcodes in human fibroblasts and human induced pluripotent stem cells extracted from bulk genomic DNA

description: Targeted sequencing of barcodes from genomic DNA harvested from barcoded human fibroblast-like cells (hiF-T cells) and human induced pluripotent stem cells (hiPS cells) derived from hiF-T cells. hiF-T cells were transduced with barcode libraries consisting of semi-random 100-mers in the 3' UTR of GFP and permitted to undergo several cell divisions before being split and seeded for parallel reprogrammings. Both barcoded hiF-T cells and hiPS cells were harvested for isolation of genomic DNA before we performed targeted amplification of the barcode vector for sequencing. See Jain et al. citation for additional details.
DOI: 10.6084/m9.figshare.22310341.v3
title: Bacterial ASV-pH preference-functional gene associations

description: Presence/absence of 332 gene types significantly associated to bacterial pH preference in representative genomes of bacterial taxa from soil and freshwater habitats. The subset of 56 genes required to run the predictive model is also included. While the model only requires the pH preference and presence/absence of each gene in columns as input, the files include a column ASV and Dataset that allow matching them to their corresponding 16S rDNA reference sequences. If the intention is to run the model on the 56_genes_pHpreference_soil_freshwater.csv file, these two columns need to be removed. <br> Files pH_preferences_ASVs_*.csv indicate all ASVs with inferred pH preferences in the study. Note that these values are higher than those found in the 56_genes_pHpreference_soil_freshwater.csv, because not all ASVs could be matched to a reference genome. For more information check supplementary table 1 in the original paper - https://www.science.org/doi/10.1126/sciadv.adf8998. The 16S rDNA representative sequences of all ASVs can be found in the Representative sequences folder, in case the intention is to match those sequences to their corresponding inferred pH preferences.
DOI: 10.17632/ccy9yhh36m
title: Global Epidemiology of Telogen Effluvium after COVID-19 Pandemic: A Systematic Review and Modeling Study

description: Supplementary data of 'Global Epidemiology of Telogen Effluvium after COVID-19 Pandemic: A Systematic Review and Modeling Study'
DOI: 10.6084/m9.figshare.12616553.v1
title: Impact of Interconnection Failure on Photovoltaic Module Performance

description: This data set consists of illuminated and dark current-voltage (I-V), suns-Voc, and EL images for a set of modules used in an interconnection study. Four 60-cell, multicrystalline Al-BSF modules were systematically cut from the rear side to inflict interconnection failures, resembling solder bond failures in the field. The cutting procedure is described in experiment PowerPoint.<br>Illuminated I-V, suns-Voc, and the summary_IV_performance spreadsheet were obtained from the Sinton FMT-350 tool.<br>The EL images in this set are taken as "EL sweeps," in which for each set of images, a series of individual images using increasing bias currents are obtained. This is used for calibrated EL image analysis to extract dark I-V from each cell using the module level images. Images were obtained using an 8MP cooled Si CCD camera with an 850nm longpass filter.
DOI: 10.6084/m9.figshare.6881465.v1
title: Table 2. Modeling scenarios overview.

description: Table 2. Modeling scenarios overview.
DOI: 10.15468/dl.vjrtb4
title: Occurrence Download

description: A dataset containing 674 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ostryopsis davidiana Decne."
 ]
}

 The dataset includes 674 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013181-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/78gk7rng6w
title: African Mahogany Work Research Dataset Under Salt Stress

description: This dataset contains research data on the leaf transpiration response of African mahogany (Khaya senegalensis) seedlings subjected to varying levels of irrigation water salinity, ranging from 0.5 to 5 dS·m⁻¹. The study was conducted using drainage lysimeters in an experimental field in Bahia, Brazil, over a four-month period. The dataset includes measurements of stomatal conductance and photosynthetically active radiation (Qleaf), providing insights into how water salinity influences plant physiology, particularly leaf transpiration. The research shows a significant reduction in transpiration with increasing salinity, especially above 3.5 dS·m⁻¹, and highlights the negative correlation between electrical conductivity and leaf transpiration. The findings emphasize the potential of African mahogany for cultivation in semi-arid regions, with a focus on the importance of proper management practices to ensure sustainable water use and mitigate the effects of salinity.

Keywords: African Mahogany, Khaya senegalensis, Transpiration, Irrigation Salinity, Semi-Arid Regions, Water Management, Soil Salinity, Stomatal Conductance, Photosynthetically Active Radiation, Sustainable Agriculture, Lysimeters.

Data Format: Excel (XLSX).
DOI: 10.17632/mz3jb4rzjy
title: Transformational Leadership and and Employee Performance of Correctional Institutions Super Maximum Security Batu Nusakambangan

description: data survey
DOI: 10.6084/m9.figshare.12668570.v1
title: InvaCost: References and description of economic cost estimates associated with biological invasions worldwide.

description: CAUTION: InvaCost is currently being analysed by a network of international collaborators in the frame of the InvaCost project (https://www.biodiversitydynamics.fr/invacost-workshop/). Interested users may contact the authors if they wish to learn more about or contribute to these current efforts. Users are in no way prevented from performing their own independent analyses and collaboration with this network is not required. Nonetheless, users and contributors are encouraged to contact the authors before using the database, as the information contained may not be directly implementable for specific analyses.<br> InvaCost ('InvaCost_database' file) is the most up-to-date, comprehensive, harmonised and robust data compilation and description of economic cost estimates associated with invasive species worldwide. Currently, this database contains 2419 cost estimates described by 46 variables. InvaCost has been constructed to provide a contemporary and freely available repository of monetary impacts that can be relevant for both research and evidence-based policy making issues. All the methodological details and tools used to build and populate this living and publicly available database are available at https://www.nature.com/articles/s41597-020-00586-z. All scientific peer-reviewed articles and grey literature (along with their bibliographic details and/or links) collected and examined for collating and describing these cost data are also provided in the 'InvaCost_references' file (see the related published paper abovementioned for specific details). InvaCost is intended to be regularly updated with contributions from both authors and future users in order to improve it both quantitatively (by new cost information) and qualitatively (if errors are identified). Any reader or user can propose to update InvaCost by contacting our e-mail address (updates@invacost.fr). Each updated version of InvaCost will be stored in the same repository as the original version, with a unique version number. For this purpose, we consider the original version of InvaCost publicly released on (date of publication) as ‘InvaCost_1.0’. The further updated versions will be named using the order of this numbering (e.g., ‘InvaCost_1.1’, InvaCost_1.2’) with all information on changes made that will be provided in a dedicated file called ‘Updates_Changes.xlsx’. We will consider ‘InvaCost_2.0’ only when the structure of the database will change.<br>IMPORTANT: In the frame of our general InvaCost project, we have now generated two other databases on the economic costs of invasions worldwide: one based on the remaining references collected (but not yet processed when constructing the original InvaCost database) that is available at https://doi.org/10.6084/m9.figshare.12928145.v1; and the other one based on documents available on languages other than English, which is available at https://doi.org/10.6084/m9.figshare.12928136.
DOI: 10.6084/m9.figshare.20653974.v1
title: Supplementary Material for: Pilot Study to Evaluate a New Method for Endotracheal Administration of Surfactant in Neonatal Respiratory Distress Syndrome: Fiberscope Assisted Surfactant Therapy (FAST)

description: <b><i>Introduction:</i></b> Currently, INSURE (Intubation-Surfactant-Extubation) and LISA (Less Invasive Surfactant Administration) are two recommended techniques for surfactant delivery to newborns with respiratory distress syndrome. The aim of this study was to evaluate the feasibility, safety, tolerability of a new technique of surfactant administration in newborns without anesthesia or laryngoscopy: Fiberscope Assisted Surfactant Therapy (FAST). <b><i>Methods:</i></b> This monocentric, prospective, nonrandomized, pilot feasibility study was conducted from January to December 2021. Spontaneously breathing infants born ≥28 weeks gestational age with respiratory distress syndrome received surfactant by a 1.5 French catheter inserted in the trachea using a flexible endoscope without anesthesia, while maintaining a continuous positive expiratory pressure. The learning curve of this new technique by caregivers was studied during training sessions on high fidelity mannequins. <b><i>Results:</i></b> Eight infants born ≥28 weeks of gestation with a birth weight of 1,000 g–2,685 g were included in the study. FAST was successfully performed in each case without anesthesia, second dose of surfactant or mechanical ventilation. One hour after FAST, a decrease of FiO<sub>2</sub> and PCO<sub>2</sub> and an increase of arterial pressure and pH were recorded with medians of individual differences of −0.9, −4 mm Hg, 6.5 mm Hg, and 0.06, respectively. The learning curves of 13 physicians showed a rapid mastery of FAST from the third attempt onwards (mean duration of 113, 66, and 50 s for 1st, 2nd, and 3rd attempts, respectively, 29–37 s for further attempts). <b><i>Conclusion:</i></b> FAST may be considered as a possible new minimally invasive surfactant therapy technique for neonates ≥28 weeks with mild respiratory distress syndrome.
DOI: 10.6084/m9.figshare.27092446.v1
title: CMIP6 AR Datasets

description: Atmospheric rivers datasets for 23 CMIP6 models used in Ma et al. (2024).
DOI: 10.17632/gczpg2cnxy
title: Kurdish Summarization Dataset (v2)

description: The first Kurdish summarization dataset is a comprehensive collection of summaries from over 40,000 news articles and headlines written in the Sorani dialect of the Kurdish language. The articles cover topics such as political, economic, sport, religion, science,  social, art and health. The dataset has been created to aid in the development and improvement of machine learning algorithms and natural language processing systems for summarization task in the Kurdish language.
The dataset contains high-quality summaries that are created by human annotators. Each Summary is a considered version of the original article and headline, capturing its key information and important points in a concise manner.
With the help of this dataset, researchers and developers can train and evaluate their summarization models for the Kurdish language, which can lead to the creation of more accurate and effective summarization tools.  The dataset is a significant contribution to the development of natural language processing technologies for the Kurdish language and can open up new avenues for research and innovation in the field.
DOI: 10.6084/m9.figshare.14130401.v1
title: ORM Fibers and Signals - All Fibers

description: GTF files describing ORM fibers and signals. Fibers are recorded as transcripts; signals are recorded as exons. The first and last nucleotide of each fibers are also recorded as exons to facilitate visualization in IGV.<br>
DOI: 10.6084/m9.figshare.16860259.v12
title: 4D Flow MRI in the infant aorta, comparing HLHS to controls

description: 4D Flow MRI acquisitions and derived conduit and reservoir metrics in the aorta of 16 children. 10 of them with hypoplastic left heart syndrome (HLHS) at 2.5 years. Supporting data for the study titled "<b>Unlocking the non-invasive assessment of conduit and reservoir function in the aorta</b>" published in Journal of Cardiovascular Translational Research (https://doi.org/10.1007/s12265-022-10221-4). Each dataset is comprised of: 1. Flow field reconstructed from MRI data 2. Analysis of the reservoir function along the aorta by Young’s module estimated from pulse wave velocity 3. Analysis of the conduit function along the aorta by advective pressure drop 4. Intermediate analysis results, such as segmentation of the lumen domain and the centerline of the vessel <b>Tools</b>: results generated by means of the Pressure Mapping code developed by the Cardiac Modelling and Imaging Biomarkers group at King’s College London (http://cmib.website/) and available on GitHub on request.<br><b>Terms</b>: in any derived work please acknowledge this source of data and associated publication.<br> <br>
DOI: 10.6084/m9.figshare.25432108.v1
title: Seven Phishing Email Datasets

description: Cite the paper if you use this dataset:<br>A. I. Champa, M. F. Rabbi, and M. F. Zibran, “Curated datasets and feature analysis for phishing email detection with machine learning,” in <i>3rd IEEE International Conference on Computing and Machine Intelligence (ICMI)</i>, 2024, pp. 1–7.<br><br>Bibtex:<br>@inproceedings{champa2024curated,title={Curated Datasets and Feature Analysis for Phishing Email Detection with Machine Learning}, author={Champa, Arifa I and Rabbi, Md Fazle and Zibran, Minhaz F}, booktitle={3rd IEEE International Conference on Computing and Machine Intelligence (ICMI)}, pages = {1--7}, year={2024} }
DOI: 10.6084/m9.figshare.20000906.v1
title: TOWARDS AN UNDERSTANDING OF THE NATURE AND CAUSES OF POST-ELECTION VIOLENCE IN KENYA: CITIZENS’ PERSPECTIVES IN THE AFTERMATH OF THE 2017 GENERAL ELECTIONS.

description: <strong>FOCUS GROUP DATA FOR PROJECT BY DR. ALBERT OMULO, TITLED "</strong><em><strong>TOWARDS AN UNDERSTANDING OF THE NATURE AND CAUSES OF POST-ELECTION VIOLENCE IN KENYA: CITIZENS’ PERSPECTIVES IN THE AFTERMATH OF THE 2017 GENERAL ELECTIONS</strong></em><strong>". </strong> <strong>This research was approved by the University of the Western Cape IRB#HS 20/1/14, 2020.</strong>
DOI: 10.6084/m9.figshare.7101251.v1
title: METAPRAGMATIC REFLEXIVITY ABOUT ALMODÓVAR 'S CINEMA ON AN ONLINE INTERACTION: INDEXICALITY, SCALES AND ENTEXTUALIZATION

description: ABSTRACT This article analyzes a post published in the Spanish website Dos Manzanas, which qualifies Pedro Almodóvar as a "pedagogue of the LGBT reality", and some of the comments it brings about. Our purpose is to study the metapragmatic reflexivity that this pedagogy produces in an online discussion that assesses if the Almodovarian cinematography projects a face (GOFFMAN, [1967] 2011) favorable to the collective in question. We focus on indexicality, entextualization and scalar processes in meaning construction. What is observed is that when the film texts are entextualised in the LGBT news site, they inspire positionings that, on the one hand, question heteronormative privileges (BUTLER, 1990), and on the other, slip into non-strategic essentialisms (SPIVAK, 1988; BUTLER, 1990).