cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.14288/1.0398012
title: Data from: The effect of range overlap on ecological niche divergence depends on spatial scale in monkeyflowers

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Patterns of niche divergence and geographical range overlap of closely related species provide insights into the evolutionary dynamics of ecological niches. When ranges overlap, shared selective pressures may preserve niche similarity along coarse‐scale macrohabitat axes (e.g., bioclimates). Alternatively, competitive interactions may drive greater divergence along local‐scale microhabitat axes (e.g., micro‐topographical features). We tested these hypotheses in 16 species pairs of western North American monkeyflowers (Erythranthe and Diplacus, formerly Mimulus) with species’ niches, geographic ranges and a robust phylogeny. We found that macrohabitat niche divergence decreased with increasing range overlap, consistent with convergent selection operating at a coarse scale. No significant relationship was detected for microhabitat niches. Additionally, niche divergence was greater for young pairs along all macrohabitat niche axes, but greater for old pairs along one microhabitat axis related to vegetation cover. For a subset of species pairs with partially overlapping ranges, greater microhabitat divergence was detected in sympatry than in allopatry for at least one niche axis for three pairs, consistent with character displacement in sympatry. Thus, coarse‐ and local‐scale niche divergence show dissimilar patterns in relation to range overlap and evolutionary time, perhaps because the relative importance of convergent versus divergent selection depends on spatial scale.
DOI: 10.14288/1.0398013
title: Data from: Colonization history, host distribution, anthropogenic influence and landscape features shape populations of white pine blister rust, an invasive alien tree pathogen

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;White pine blister rust is caused by the fungal pathogen Cronartium ribicola J.C. Fisch (Basidiomycota, Pucciniales). This invasive alien pathogen was introduced into North America at the beginning of the 20th century on pine seedlings imported from Europe and has caused serious economic and ecological impacts. In this study, we applied a population and landscape genetics approach to understand the patterns of introduction and colonization as well as population structure and migration of C. ribicola. We characterized 1,292 samples of C. ribicola from 66 geographic locations in North America using single nucleotide polymorphisms (SNPs) and evaluated the effect of landscape features, host distribution, and colonization history on the structure of these pathogen populations. We identified eastern and western genetic populations in North America that are strongly differentiated. Genetic diversity is two to five times higher in eastern populations than in western ones, which can be explained by the repeated accidental introductions of the pathogen into northeastern North America compared with a single documented introduction into western North America. These distinct genetic populations are maintained by a barrier to gene flow that corresponds to a region where host connectivity is interrupted. Furthermore, additional cryptic spatial differentiation was identified in western populations. This differentiation corresponds to landscape features, such as mountain ranges, and also to host connectivity. We also detected genetic differentiation between the pathogen populations in natural stands and plantations, an indication that anthropogenic movement of this pathogen still takes place. These results highlight the importance of monitoring this invasive alien tree pathogen to prevent admixture of eastern and western populations where different pathogen races occur.
DOI: 10.14288/1.0398015
title: Data from: Intruder colour and light environment jointly determine how nesting male stickleback respond to simulated territorial intrusions

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Variation in male nuptial colour signals might be maintained by negative frequency-dependent selection. This can occur if males are more aggressive towards rivals with locally common colour phenotypes. To test this hypothesis, we introduced red or melanic three-dimensional printed-model males into the territories of nesting male stickleback from two optically distinct lakes with different coloured residents. Red-throated models were attacked more in the population with red males, while melanic models were attacked more in the melanic male lake. Aggression against red versus melanic models also varied across a depth gradient within each lake, implying that the local light environment also modulated the strength of negative frequency dependence acting on male nuptial colour.
DOI: 10.14288/1.0398016
title: Data from: Loss of sexual recombination and segregation is associated with increased diversification in evening primroses

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;The loss of sexual recombination and segregation in asexual organisms has been portrayed as an irreversible process that commits asexually-reproducing lineages to reduced diversification. We test this hypothesis by estimating rates of speciation, extinction, and transition between sexuality and functional asexuality in the evening primroses. Specifically, we estimate these rates using the recently developed BiSSE (Binary State Speciation and Extinction) phylogenetic comparative method, which employs maximum likelihood and Bayesian techniques. We infer that net diversification rates (speciation minus extinction) in functionally asexual evening primrose lineages are roughly eight times faster than diversification rates in sexual lineages, largely due to higher speciation rates in asexual lineages. We further reject the hypothesis that a loss of recombination and segregation is irreversible because the transition rate from functional asexuality to sexuality is significantly greater than zero.and in fact exceeded the reverse rate. These results provide the first empirical evidence in support of the alternative theoretical prediction that asexual populations should instead diversify more rapidly than sexual populations because they are free from the homogenizing effects of sexual recombination and segregation. Although asexual reproduction may often constrain adaptive evolution, our results show that the loss of recombination and segregation need not be an evolutionary dead-end in terms of diversification of lineages.
DOI: 10.14288/1.0398017
title: Data from: A comparison of genomic islands of differentiation across three young avian species pairs

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Detailed evaluations of genomic variation between sister species often reveal distinct chromosomal regions of high relative differentiation (i.e., “islands of differentiation” in FST), but there is much debate regarding the causes of this pattern. We briefly review the prominent models of genomic islands of differentiation and compare patterns of genomic differentiation in three closely related pairs of New World warblers with the goal of evaluating support for the four models. Each pair (MacGillivray's / mourning warblers; Townsend's / black‐throated green warblers; and Audubon's / myrtle warblers) consists of forms that were likely separated in western and eastern North American refugia during cycles of Pleistocene glaciations and have now come into contact in western Canada, where each forms a narrow hybrid zone. We show strong differences between pairs in their patterns of genomic heterogeneity in FST, suggesting differing selective forces and/or differing genomic responses to similar selective forces among the three pairs. Across most of the genome, levels of within‐group nucleotide diversity (πWithin) are almost as large as levels of between‐group nucleotide distance (πBetween) within each pair, suggesting recent common ancestry and/or gene flow. In two pairs, a pattern of the FST peaks having low πBetween suggests that selective sweeps spread between geographically differentiated groups, followed by local differentiation. This “sweep‐before‐differentiation” model is consistent with signatures of gene flow within the yellow‐rumped warbler species complex. These findings add to our growing understanding of speciation as a complex process that can involve phases of adaptive introgression among partially differentiated populations.
DOI: 10.14288/1.0398018
title: Data from: Positive relationship between genetic- and species diversity on limestone outcrops in the Carpathian Mountains

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;We asked if the genetic diversity of Saponaria bellidifolia (a habitat specialist plant) and the species diversity of its habitat are driven by parallel landscape-level processes in an island-like system of limestone outcrops in the Carpathian Mountains. We tested the relationship of these two diversity levels at local and regional geographic scales. Local genetic and species diversity showed parallel patterns influenced by the number of plant communities. Likewise, at regional level there was strong evidence for parallel equilibrial dynamics of genotypes and species. However, a superimposed matrix effect enhanced the regional species diversity only. Genetic diversity of habitat specialist organisms and species diversity of these limestone outcrop islands on mainland are modulated by parallel landscape-level processes at different geographic scales, and mechanisms may be identified at very high spatial resolutions.
DOI: 10.14288/1.0398019
title: Data from: Reciprocal abundance shifts of the intertidal sea stars, Evasterias troschelii and Pisaster ochraceus, following sea star wasting disease

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Disease emergence occurs within the context of ecological communities, and disease driven declines in host populations can lead to complex direct and indirect ecological effects. Varying effects of a single disease among multiple susceptible hosts could benefit relatively resistant species. Beginning in 2013, an outbreak of sea star wasting disease (SSWD) led to population declines of many sea star species along the west coast of North America. Through field surveys and laboratory experiments, we investigated how and why the relative abundances of two co-occurring sea star species, Evasterias troschelii and Pisaster ochraceus, shifted during the ongoing wasting epidemic in Burrard Inlet, British Columbia, Canada. We hypothesized that Evasterias is competitively inferior to Pisaster but more resistant to SSWD. Thus, we predicted that SSWD-induced declines of Pisaster could mitigate the negative effects of SSWD on Evasterias, as the latter would experience competitive release. We document shifts in sea star abundance from 2007-2017: Pisaster abundance and mean size declined during the outbreak, while Evasterias abundance increased from relatively rare to numerically dominant within the intertidal. When exposed to symptomatic sea stars, Pisaster and Evasterias both showed signs of SSWD, but transmission and susceptibility was lower in Evasterias. Despite diet overlap documented in our field surveys, Evasterias was not outcompeted by Pisaster in laboratory trails conducted with the relatively small Pisaster available after the outbreak. Interference competition with larger Pisaster, or prey exploitation by Pisaster during summer when Evasterias is primarily subtidal, may explain the rarity of Evasterias prior to Pisaster declines. Our results suggest that indirect effects mediated by competition can mask some of the direct effects of disease outbreaks, and the combination of direct and indirect effects will determine the restructuring of a community after disturbance.
DOI: 10.14288/1.0398021
title: Data from: Temperate grassland songbird species accumulate incrementally along a gradient of primary productivity

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Global analyses of bird communities along elevation gradients suggest that bird diversity on arid mountains is primarily limited by water availability, not temperature or altitude. However, the mechanism by which water availability, and subsequently primary productivity, increases bird diversity is still unclear. Here we evaluate two possible mechanisms from species-energy theory. The more individuals hypothesis proposes that a higher availability of resources increases the total number of individuals that can be supported, and therefore the greater number of species that will be sampled. By contrast, the more specialization hypothesis proposes that increasing resource availability will permit specialists to exploit otherwise rare resources, thus increasing total diversity. We used 5 years of surveys of grassland songbird communities along an elevational gradient in British Columbia, Canada, to distinguish between these hypotheses. Vegetation changed markedly in composition along the gradient and contrary to the expectations of the more specialization hypothesis, bird community composition was remarkably constant. However, both total abundance and species richness of birds increased with increasing water availability to plants. When we used rarefaction to correct species richness for differences in total abundance, much of the increase in bird diversity was lost, consistent with the expectations of the more individuals hypothesis. Furthermore, high species richness was associated with reductions in territory size of common bird species, rather than the fine-scale spatial partitioning of the landscape. This suggests that bird diversity increases when greater resource availability allows higher densities rather than greater habitat specialization. These results help explain a pervasive global pattern in bird diversity on arid mountains, and suggest that in such landscapes conservation of grassland birds is strongly linked to climate and hydrology.
DOI: 10.14288/1.0398024
title: Data from: "Transcriptome resources for three hybrid sunflower species (Helianthus anomalus, H. deserticola, H paradoxus)" in Genomic Resources Notes accepted 1 February 2013–31 March 2013

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;This article documents the public availability of three transcriptome sequences. These genomic resources were developed for the following species: Helianthus anomalus, Helianthus deserticola and Helianthus paradoxus.
DOI: 10.14288/1.0398025
title: Data from: A test of the effects of timing of a pulsed resource subsidy on stream ecosystems

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Spatial resource subsidies can alter bottom-up and top-down forces of community regulation across ecosystem boundaries. Most subsidies are temporally variable, and recent theory has suggested that consumer-resource dynamics can be stabilized if the peak timing of a subsidy is desynchronized with that of prey productivity in the recipient ecosystem. However, magnitude of consumer responses per se could depend on the subsidy timing, which may be a critical component for community dynamics and ecosystem processes. The aim of this study was to test (1) whether a recipient consumer (cutthroat trout) responds differently to a resource subsidy occurring early in its growing season than to a subsidy occurring late in the season, and, if this is the case, (2) whether the timing-dependent consumer response has cascading effects on communities and ecosystem functions in streams. To test those hypotheses, we conducted a large-scale field experiment, in which we directly manipulated the timing of augmentation of the terrestrial invertebrates that enter stream (i.e., peak timing of June-August vs. August-October), keeping constant the total amounts of the invertebrates entered. We found large increases in the individual growth rate and population biomass of the cutthroat trout, in response to the early resource pulse, but not to the late pulse. This timing-dependent consumer response cascaded down to reduce benthic invertebrates and leaf break-down rate, and increased water nutrient concentrations. Furthermore, the early resource pulse resulted in higher maturity rate of the cutthroat trout in the following spring, demonstrating the importance of the subsidy timing on long-term community dynamics via the consumer's numerical response. Our results emphasize the need to acknowledge timing-dependent consumer responses in understanding the effects of subsidies on communities and ecosystem processes. Elucidating the mechanisms by which consumers effectively exploit pulsed subsidies is an important avenue to better understand community dynamics in spatially coupled ecosystems.
DOI: 10.14288/1.0398026
title: Data from: Morphological and genetic analysis of sympatric dace within the Rhinichthys cataractae species complex: a case of isolation lost

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;The Nooksack dace (Pisces: an undescribed putative taxon within Rhinichthys) and longnose dace (Rhinichthys cataractae) are two forms within the R. cataractae species complex that are distinguishable from one another by mitochondrial (mt) DNA divergence of 2–3%, as well as by subtle morphological differences. The two forms are found in allopatry in south-eastern British Columbia (BC), Canada, and adjacent areas of western Washington, USA, and are sympatric in three streams in the lower Fraser River valley, BC, and may represent cryptic species. We assayed 12 morphometric traits and two meristic characters (N = 582; 23 sampling locations) to test for diagnosability of the two dace, as well as to test for morphological differentiation by mtDNA type in sympatry. We then employed a 10-locus microsatellite DNA assay (N = 374; 12 sampling locations) to test for genetic distinction between Nooksack dace and longnose dace in sympatry. We found that the two dace could not be reliably differentiated morphologically: there was overlap in all characters measured, and sampling location had a much larger effect on morphology than mtDNA group. Microsatellite analysis showed no distinction by mtDNA type in localities with sympatric dace, indicating complete admixture between the sympatric Nooksack dace and longnose dace. The Nooksack dace and longnose dace provide an example of ‘ephemeral speciation’: two lineages that, despite an estimated 1.1 Myr of isolation, have developed no apparent barriers to reproduction and appear to have collapsed into a single interbreeding population where they come into secondary contact. Nonetheless, the zone of secondary contact and the diagnosability of the Nooksack dace in terms of mtDNA represent significant aspects of the evolutionary legacy within R. cataractae and support its conservation importance.
DOI: 10.15468/dl.4pbamw
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carica pubescens (A.DC.) Lenne & K.Koch",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Occurrence evidence)"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000467-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14288/1.0398027
title: Data from: Low levels of hybridization across two contact zones among three species of woodpeckers (Sphyrapicus sapsuckers)

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Three species of closely related woodpeckers (sapsuckers; Sphyrapicus) hybridize where they come into contact, presenting a rare ‘λ‐shape’ meeting of hybrid zones. Two of the three arms of this hybrid zone are located on either side of the Interior Plateau of British Columbia, Canada bordering the foothills of the Coast Mountains and the Rocky Mountains. The third arm is located in the eastern foothills of the Rocky Mountains. The zones of hybridization present high variability of phenotypes and alleles in relatively small areas and provide an opportunity to examine levels of reproductive isolation between the taxa involved. We examined phenotypes (morphometric traits and plumage) and genotypes of 175 live birds across the two hybrid zones. We used the Genotyping By Sequencing (GBS) method to identify 180 partially diagnostic single nucleotide polymorphisms (SNPs) to generate a genetic hybrid index (GHI) for each bird. Phenotypically diverged S. ruber and S. nuchalis are genetically closely related, while S. nuchalis and S. varius have similar plumage but are well separated at the genetic markers studied. The width of both hybrid zones is narrower than expected under neutrality, and analyses of both genotypes and phenotypes indicate that hybrids are rare in the hybrid zone. Rarity of hybrids indicates assortative mating and/or some form of fitness reduction in hybrids, which might maintain the species complex despite close genetic distance and introgression. These findings further support the treatment of the three taxa as distinct species.
DOI: 10.14288/1.0398028
title: Data from: Variation in offspring development is driven more by weather and maternal condition than predation risk

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;1. Variation in offspring development is expected to be driven by constraints on resource allocation between growth and maintenance (e.g., thermoregulation). Rapid post-natal development decreases predation risk, while inclement weather likely prolongs development. For taxa with parental care, parental behaviour may buffer offspring against some extrinsic drivers. 2. Using a 7-year dataset from an alpine population of horned lark Eremophila alpestris, a ground-nesting songbird in northern British Columbia, Canada, we investigated multiple potential drivers of variation in incubation and nestling development duration. 3. Using path analysis, we evaluated the direct effects of weather, predation risk, and parental care on offspring development, as well as, indirect developmental ‘carry-over’ effects of conditions during incubation on the nestling period. 4. Nestling period duration varied by nearly 100% (7–13 days) and incubation duration by 40% (10–14 days). Cold ambient temperatures late in the nestling period prolonged development by 1 day for every 2 days below 10°C; particularly when combined with heavy precipitation. Rapid nestling development was associated with high predation risk, and prolonging development incurred a nest survival cost (–2.3%/day). Females in good condition created nest environments that promoted rapid nestling development periods (average = 8–9 days) compared to poor condition females during harsh, early-season conditions (10–11 days), indicating buffering capabilities against environmental constraints. Incubation duration was only weakly correlated with fledging age (r = –0.21) suggesting minimal developmental carry-over effects. 5. Given high nest predation risk, immediate fitness benefits can be derived by overcoming environmental constraints and reducing development time. While predation risk was influential, inclement weather and maternal condition had stronger effects on within-population variation in development time. We highlight the importance of addressing multiple drivers of variation in key life-history traits and provide context for understanding life-history theory under changing environmental conditions.