cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12324854.v1
title: Additional file 5 of RNA structural dynamics regulate early embryogenesis through controlling transcriptome fate and function

description: Table S4. Results of motif enrichment analysis in 3′ UTR structurally variable regions.
DOI: 10.6084/m9.figshare.7081832.v1
title: Additional file 10: of Comparative transcriptome analysis reveals that tricarboxylic acid cycle-related genes are associated with maize CMS-C fertility restoration

description: DEGs homologous to Arabidopsis male sterility (MS)/reproduction (MR) genes. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.7081970.v1
title: Additional file 6: of Comparative transcriptome analysis reveals that tricarboxylic acid cycle-related genes are associated with maize CMS-C fertility restoration

description: Coding sequences of novel genes. (TXT 1323 kb)
DOI: 10.6084/m9.figshare.12324857.v1
title: Additional file 6 of RNA structural dynamics regulate early embryogenesis through controlling transcriptome fate and function

description: Table S5. Summary of DLE element in structurally variable regions during early development and its associated biological function.
DOI: 10.6084/m9.figshare.12324863
title: Additional file 8 of RNA structural dynamics regulate early embryogenesis through controlling transcriptome fate and function

description: Table S7. Maternal and zygotic gene sets categorized by gene expression and SNP.
DOI: 10.6084/m9.figshare.7081988
title: Additional file 7: of Comparative transcriptome analysis reveals that tricarboxylic acid cycle-related genes are associated with maize CMS-C fertility restoration

description: Function annotations of novel genes. (XLSX 315 kb)
DOI: 10.6084/m9.figshare.7081988.v1
title: Additional file 7: of Comparative transcriptome analysis reveals that tricarboxylic acid cycle-related genes are associated with maize CMS-C fertility restoration

description: Function annotations of novel genes. (XLSX 315 kb)
DOI: 10.6084/m9.figshare.7082144.v1
title: Additional file 8: of Nogo-B receptor increases the resistance to tamoxifen in estrogen receptor-positive breast cancer cells

description: Survivin (BIRC5) mRNA expression data were retrieved from a gene-expression profiling dataset (202094_x from Kaplan–Meier Plot database) of 2046 patients with ERα-positive breast cancer and 928 patients with ERα-positive breast cancer treated with endocrine therapy. Kaplan–Meier analysis revealed significantly reduced relapse-free survival (RFS) (p &lt; 0.05) in 1023 patients with ERα-positive breast cancer with high survivin expression in tumors as compared to 1023 patients with low survivin expression in tumors. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.7081862
title: Additional file 12: of Comparative transcriptome analysis reveals that tricarboxylic acid cycle-related genes are associated with maize CMS-C fertility restoration

description: Identification of PPR genes among DEGs. â Directionâ means relative to the expression level in NIL_Rf4. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7082003.v1
title: Additional file 11: of Nogo-B receptor increases the resistance to tamoxifen in estrogen receptor-positive breast cancer cells

description: NgBR (NUS1) mRNA expression data were retrieved from GSE6532 database. Kaplan–Meier analysis revealed significantly reduced relapse-free survival (RFS) (p &lt; 0.05) in patients with high NgBR expression in tumors (n = 189) as compared to patients with low NgBR expression in tumors (n = 154). (XLS 67 kb)
DOI: 10.6084/m9.figshare.7082021.v1
title: Additional file 9: of Comparative transcriptome analysis reveals that tricarboxylic acid cycle-related genes are associated with maize CMS-C fertility restoration

description: Two hundred forty-two significantly enriched GO terms obtained by Fisher’s test (Q ≤ 0.05). (XLSX 20 kb)
DOI: 10.6084/m9.figshare.12324863.v1
title: Additional file 8 of RNA structural dynamics regulate early embryogenesis through controlling transcriptome fate and function

description: Table S7. Maternal and zygotic gene sets categorized by gene expression and SNP.
DOI: 10.6084/m9.figshare.7081925
title: Additional file 11: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

description: Table S9. Differentially expressed genes without the PICEs in the promoters identified from the rice RNA-Seq data analysis. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7082027
title: Additional file 5: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

description: Table S4. Pathogen-infected rice microarray and RNA-Seq data used in this study. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9178994.v1
title: Late Jurassic I-type rhyolites from the Duobuza region, north-central Tibet: evidence for the occurrence of juvenile lower crust and crustal growth in the Southern Qiangtang Terrane

description: Previous studies of the Southern Qiangtang (SQ) Terrane in Tibet have shown significant growth of continental crust during the late Mesozoic (ca. 170–120 Ma) through underplating of mantle-derived melts beneath ancient lower crust. However, the mechanism of crustal growth remains defective during the Late Jurassic. In this contribution, we report new zircon U–Pb ages, whole-rock major and trace element concentrations, and zircon Hf isotopic compositions of Late Jurassic rhyolites from the Duobuza area in the SQ Terrane. Zircon LA–ICP–MS U–Pb dating yields concordant ages and weighted mean <sup>206</sup>Pb/<sup>238</sup>U ages of 151–149 Ma, indicating that the rhyolites were erupted during the Late Jurassic. The rhyolite samples yield high SiO<sub>2</sub> (69.1–73.4 wt.%) and Na<sub>2</sub>O (3.82–6.49 wt.%) concentrations, high values of the differentiation index (95.4–98.5), moderate Al<sub>2</sub>O<sub>3</sub> (13.1–15.5 wt.%) and K<sub>2</sub>O (2.55–3.26 wt.%) concentrations, and relatively low TiO<sub>2</sub> (0.34–0.44 wt.%), MgO (0.14–0.67 wt.%), and MnO (0.01–0.10 wt.%) concentrations and Mg# values (8.9–33.5). They are enriched in Rb, Th, Ba, and Pb, depleted in Nb, Ta, Sr, Ti, and P, and yield negative Eu anomalies. These characteristics suggest that the Duobuza rhyolites represent medium- to high-K calc-alkaline, highly fractionated I-type granitoids. Variations in major and trace element concentrations indicate that the rhyolites underwent significant fractionation of Fe–Ti oxides, plagioclase, K-feldspar, hornblende, biotite, and apatite. The samples yield positive zircon ε<sub>Hf</sub>(t) values (+0.08 to +10.9) and young T<sup>CD</sup><sub>M</sub> model ages (816–386 Ma), indicating that they were generated through partial melting of juvenile lower crust of the SQ Terrane. These data are distinct from those of Late Jurassic intermediate–felsic plutons in the SQ Terrane that generally yield negative ε<sub>Hf</sub>(t) values and ancient T<sub>C</sub><sup>DM</sup> model ages. We suggest that the occurrence of the Duobuza rhyolites is the significant witness. The presence of juvenile lower crust beneath the SQ Terrane during the Late Jurassic (ca. 150 Ma) rather than during the Early Cretaceous (ca. 120Ma). The transition from ancient to juvenile lower crust has already began in the SQ Terrane during the Late Jurassic.
DOI: 10.6084/m9.figshare.9952499
title: Data file S2 from A curious observation of phenomena occurring during lapping/polishing processes

description: Four markers positions on “abrasive body 3” tracked by the Vicon motion capture system.
DOI: 10.6084/m9.figshare.12324866
title: Additional file 9 of RNA structural dynamics regulate early embryogenesis through controlling transcriptome fate and function

description: Table S8. GO term enrichment analysis of down-regulated genes upon elavl1a knockdown at 6 h.p.f.
DOI: 10.6084/m9.figshare.24760827.v1
title: An EEG Dataset of Neural Signatures in a Competitive Two-Player Game Encouraging Deceptive Behavior

description: The dataset features 12 pairs of participants in a two-player deception game, with role switching. EEG data were recorded using 30 electrodes per player, complemented by behavioral logs and EEG trigger timestamps. It includes both raw and preprocessed EEG data, as well as formated data for 1d-CNN classification, catering to various research needs. This comprehensive dataset, offering perspectives of both players and observers in a deceptive context, is a robust foundation for exploring cognitive processes during interactive deceptive tasks.
DOI: 10.6084/m9.figshare.7081919
title: Additional file 10: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

description: Table S8. Differentially expressed genes without the PICEs in the promoters identified from the rice microarray data analysis. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7081952
title: Additional file 13: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

description: Table S11. The enrichment analysis of the differentially expressed rice genes driven by PIPs through Fisherâ s exact test comparing each pair of the proportions of the differentially expressed genes in the total genes from Additional file 8: Table S10. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7081937
title: Additional file 12: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

description: Table S10. The proportion of the differentially expressed genes in the total rice genes. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7081937.v1
title: Additional file 12: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

description: Table S10. The proportion of the differentially expressed genes in the total rice genes. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7081991
title: Additional file 3: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

description: Table S2. InterPro annotation for 190 putative disease resistance/susceptibility-related protein-encoding transcripts (119 groups) encoded by the rice genes under the control of PIPs. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.7082054
title: Additional file 7: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

description: Table S6. Differentially expressed transcripts driven by PIPs with the PICEs identified from the rice RNA-Seq data analysis. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.7082054.v1
title: Additional file 7: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

description: Table S6. Differentially expressed transcripts driven by PIPs with the PICEs identified from the rice RNA-Seq data analysis. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.9178994
title: Late Jurassic I-type rhyolites from the Duobuza region, north-central Tibet: evidence for the occurrence of juvenile lower crust and crustal growth in the Southern Qiangtang Terrane

description: Previous studies of the Southern Qiangtang (SQ) Terrane in Tibet have shown significant growth of continental crust during the late Mesozoic (ca. 170–120 Ma) through underplating of mantle-derived melts beneath ancient lower crust. However, the mechanism of crustal growth remains defective during the Late Jurassic. In this contribution, we report new zircon U–Pb ages, whole-rock major and trace element concentrations, and zircon Hf isotopic compositions of Late Jurassic rhyolites from the Duobuza area in the SQ Terrane. Zircon LA–ICP–MS U–Pb dating yields concordant ages and weighted mean <sup>206</sup>Pb/<sup>238</sup>U ages of 151–149 Ma, indicating that the rhyolites were erupted during the Late Jurassic. The rhyolite samples yield high SiO<sub>2</sub> (69.1–73.4 wt.%) and Na<sub>2</sub>O (3.82–6.49 wt.%) concentrations, high values of the differentiation index (95.4–98.5), moderate Al<sub>2</sub>O<sub>3</sub> (13.1–15.5 wt.%) and K<sub>2</sub>O (2.55–3.26 wt.%) concentrations, and relatively low TiO<sub>2</sub> (0.34–0.44 wt.%), MgO (0.14–0.67 wt.%), and MnO (0.01–0.10 wt.%) concentrations and Mg# values (8.9–33.5). They are enriched in Rb, Th, Ba, and Pb, depleted in Nb, Ta, Sr, Ti, and P, and yield negative Eu anomalies. These characteristics suggest that the Duobuza rhyolites represent medium- to high-K calc-alkaline, highly fractionated I-type granitoids. Variations in major and trace element concentrations indicate that the rhyolites underwent significant fractionation of Fe–Ti oxides, plagioclase, K-feldspar, hornblende, biotite, and apatite. The samples yield positive zircon ε<sub>Hf</sub>(t) values (+0.08 to +10.9) and young T<sup>CD</sup><sub>M</sub> model ages (816–386 Ma), indicating that they were generated through partial melting of juvenile lower crust of the SQ Terrane. These data are distinct from those of Late Jurassic intermediate–felsic plutons in the SQ Terrane that generally yield negative ε<sub>Hf</sub>(t) values and ancient T<sub>C</sub><sup>DM</sup> model ages. We suggest that the occurrence of the Duobuza rhyolites is the significant witness. The presence of juvenile lower crust beneath the SQ Terrane during the Late Jurassic (ca. 150 Ma) rather than during the Early Cretaceous (ca. 120Ma). The transition from ancient to juvenile lower crust has already began in the SQ Terrane during the Late Jurassic.
DOI: 10.6084/m9.figshare.9952499.v1
title: Data file S2 from A curious observation of phenomena occurring during lapping/polishing processes

description: Four markers positions on “abrasive body 3” tracked by the Vicon motion capture system.
DOI: 10.5281/zenodo.10659175
title: Supporting data for "A Multi-Dimensional Approach to Map Disease Relationships Challenges Classical Disease Views"

description: This repository contains supporting data and tables for the study "A Multi-Dimensional Approach to Map Disease Relationships Challenges Classical Disease Views".
DOI: 10.5281/zenodo.10659176
title: Supporting data for "A Multi-Dimensional Approach to Map Disease Relationships Challenges Classical Disease Views"

description: This repository contains supporting data for the study "A Multi-Dimensional Approach to Map Disease Relationships Challenges Classical Disease Views".
DOI: 10.5281/zenodo.10663329
title: Supplementary and raw data for the Reindeer Lake (Reinodden Point, Svalbard)

description: Own data included within the dataset:

1. Orthophotomap - partially processed data, developed based on photogrammetric images captured by a drone flight in 2022. The map was generated using Agisoft Metashaper Professional software. Unit WGS84/UTM zone 33N, resolition: 0.2 m. 

2. DEM - partially processed data, developed based on photogrammetric images captured by a drone flight in 2022. The map was generated using Agisoft Metashaper Professional software. Unit WGS84/UTM zone 33N, resolition: 0.2 m.

3. shp file - geomorphological and surficial geological map of the Reinodden Point. The data was generated using Agisoft Metashaper Professional software ArcGIS (ArcMap 10.8.1.). Unit WGS84/UTM zone 33N.

4. shp file - border of lake catchment. The data was generated using Global Mapper Pro v23. Unit WGS84/UTM zone 33N.

5. Sample collection location: WGS84/UTM zone 33N.
DOI: 10.5281/zenodo.10663330
title: Supplementary and raw data for the Reindeer Lake (Reinodden Point, Svalbard)

description: Own data included within the dataset:

1. Orthophotomap - partially processed data, developed based on photogrammetric images captured by a drone flight in 2022. The map was generated using Agisoft Metashaper Professional software. Unit WGS84/UTM zone 33N, resolition: 0.2 m. 

2. DEM - partially processed data, developed based on photogrammetric images captured by a drone flight in 2022. The map was generated using Agisoft Metashaper Professional software. Unit WGS84/UTM zone 33N, resolition: 0.2 m.

3. shp file - geomorphological and surficial geological map of the Reinodden Point. The data was generated using Agisoft Metashaper Professional software ArcGIS (ArcMap 10.8.1.). Unit WGS84/UTM zone 33N.

4. shp file - border of lake catchment. The data was generated using Global Mapper Pro v23. Unit WGS84/UTM zone 33N.

5. Sample collection location: WGS84/UTM zone 33N.
DOI: 10.5281/zenodo.10663498
title: Supporting data for "A Multi-Dimensional Approach to Map Disease Relationships Challenges Classical Disease Views"

description: This repository contains supporting data and tables for the study "A Multi-Dimensional Approach to Map Disease Relationships Challenges Classical Disease Views".
DOI: 10.6084/m9.figshare.12324812
title: Additional file 1 of Elucidating the roles of three β-glucuronosyltransferases (GLCATs) acting on arabinogalactan-proteins using a CRISPR-Cas9 multiplexing approach in Arabidopsis

description: Additional file 1: Five supplemental tables, three supplemental figures and their corresponding legends. Table S1. List of guide RNA sequences and their target genes. Table S2. List of primers used to assemble three gRNAs (A1, B1, and C1) into pHEE401E binary vector. Table S3. List of primers used to assemble four gRNAs (A2, B1, C2, and C3) into pHEE401E binary vector. Table S4. List of primers for sequencing off-targets. Table S5. List of primers used for qRT-PCR. Figure S1. Amino acid sequence alignment of GLCAT14A, GLCAT14B, and GLCAT14C. Figure S2. Expression profiles of GLCAT14A, GLCAT14B, and GLCAT14C obtained from the Klepikova Arabidopsis Atlas eFP Browser of the Bio-Analytic Resource for Plant Biology (BAR) [18]. The link for the expression profile of GLCAT14A can be found at http://bar.utoronto.ca/efp/cgi-bin/efpWeb.cgi?primaryGene=AT5G39990&dataSource=Klepikova_Atlas&modeInput=Absolute; The link for the expression profile of GLCAT14B can be found at http://bar.utoronto.ca/efp/cgi-bin/efpWeb.cgi?primaryGene=AT5G15050&dataSource=Klepikova_Atlas&modeInput=Absolute; The link for the expression profile of GLCAT14C can be found at http://bar.utoronto.ca/efp/cgi-bin/efpWeb.cgi?primaryGene=AT2G37585&dataSource=Klepikova_Atlas&modeInput=Absolute. Figure S3. Expression patterns of GLCAT14A, GLCAT14B, and GLCAT14C during seed development obtained from the Arabidopsis eFP Browser of the Bio-Analytic Resource for Plant Biology (BAR) (bar.utoronto.ca). The link for the expression profile of GLCAT14A during seed development can be found at http://bar.utoronto.ca/efp/cgi-bin/efpWeb.cgi?dataSource=Seed&modeInput=Absolute&primaryGene=At5g39990&secondaryGene=At3g27340&override=None&threshold=219.05&modeMask_low=None&modeMask_stddev=None; The link for the expression profile of GLCAT14B during seed development can be found at http://bar.utoronto.ca/efp/cgi-bin/efpWeb.cgi?dataSource=Seed&modeInput=Absolute&primaryGene=AT5G15050&secondaryGene=At3g27340&override=&threshold=17.75&modeMask_low=None&modeMask_stddev=None&gene_alias1=GlcAT14B&gene_alias2=; The link for the expression profile of GLCAT14C during seed development can be found at http://bar.utoronto.ca/efp/cgi-bin/efpWeb.cgi?dataSource=Seed&modeInput=Absolute&primaryGene=AT2G37585&secondaryGene=At3g27340&override=&threshold=18.13&modeMask_low=None&modeMask_stddev=None&gene_alias1=GlcAT14C&gene_alias2=.
DOI: 10.6084/m9.figshare.12324866.v1
title: Additional file 9 of RNA structural dynamics regulate early embryogenesis through controlling transcriptome fate and function

description: Table S8. GO term enrichment analysis of down-regulated genes upon elavl1a knockdown at 6 h.p.f.
DOI: 10.6084/m9.figshare.7081865
title: Additional file 7: of Comparative analysis of circular RNAs between soybean cytoplasmic male-sterile line NJCMS1A and its maintainer NJCMS1B by high-throughput sequencing

description: Table S5. KEGG pathway enrichment of parental genes of differentially expression circRNAs in soybean. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7081865.v1
title: Additional file 7: of Comparative analysis of circular RNAs between soybean cytoplasmic male-sterile line NJCMS1A and its maintainer NJCMS1B by high-throughput sequencing

description: Table S5. KEGG pathway enrichment of parental genes of differentially expression circRNAs in soybean. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7081925.v1
title: Additional file 11: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

description: Table S9. Differentially expressed genes without the PICEs in the promoters identified from the rice RNA-Seq data analysis. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7082006
title: Additional file 8: of Comparative transcriptome analysis reveals that tricarboxylic acid cycle-related genes are associated with maize CMS-C fertility restoration

description: All DEGs with exonic SNPs. (XLSX 504 kb)
DOI: 10.6084/m9.figshare.7082084.v1
title: Additional file 10: of LGR5, a novel functional glioma stem cell marker, promotes EMT by activating the Wnt/Î˛-catenin pathway and predicts poor survival of glioma patients

description: Table S3. Univariate analysis of factors associated with prognosis in the HGG group. (XLS 13 kb)
DOI: 10.6084/m9.figshare.7082108.v1
title: Additional file 6: of Nogo-B receptor increases the resistance to tamoxifen in estrogen receptor-positive breast cancer cells

description: NgBR (NUS1) mRNA expression data were retrieved from a gene-expression profiling dataset (225071_x from Kaplan–Meier Plot database) of 755 patients with ERα-positive breast cancer and 335 patients with ERα-positive breast cancer treated with endocrine therapy. Kaplan–Meier analysis revealed significantly reduced relapse-free survival (RFS) (p &lt; 0.05) in 373 patients with ERα positive breast cancer with high NgBR expression in tumors as compared to 382 patients with low NgBR expression in tumors. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.12324827
title: Additional file 10 of RNA structural dynamics regulate early embryogenesis through controlling transcriptome fate and function

description: Table S9. List of oligos used for this Study.
DOI: 10.6084/m9.figshare.7082102
title: Additional file 5: of A metagenome-wide association study of gut microbiota in asthma in UK adults

description: Table S3. The genus: The relative abundance and statistical test of the genus. (XLS 1084 kb)
DOI: 10.6084/m9.figshare.12324827.v1
title: Additional file 10 of RNA structural dynamics regulate early embryogenesis through controlling transcriptome fate and function

description: Table S9. List of oligos used for this Study.
DOI: 10.6084/m9.figshare.19663820
title: Additional file 8 of The Bursaphelenchus xylophilus effector BxML1 targets the cyclophilin protein (CyP) to promote parasitism and virulence in pine

description: Additional file 8.
DOI: 10.6084/m9.figshare.7081877.v1
title: Additional file 8: of Comparative analysis of circular RNAs between soybean cytoplasmic male-sterile line NJCMS1A and its maintainer NJCMS1B by high-throughput sequencing

description: Table S6. Predicted circRNA-miRNA-mRNA connection for differentially expressed circRNAs in NJCMS1A and NJCMS1B. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.7081964
title: Additional file 1: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

description: Table S1. Chromosomal distribution of the rice genes controlled by putative PIPs. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.7082042.v1
title: Additional file 6: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

description: Table S5. Differentially expressed transcripts driven by PIPs with the PICEs identified from the rice microarray data analysis. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.12324848
title: Additional file 3 of RNA structural dynamics regulate early embryogenesis through controlling transcriptome fate and function

description: Table S2. LFQ intensity of proteins in UV+ and UV- samples at 0, 0.4 and 4 h.p.f.