cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.x5we9h
title: Occurrence Download

description: A dataset containing 2655 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Deutzia crenata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 2655 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001048-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.f5124
title: Data from: Patterns of parasite community dissimilarity: the significant role of land use and lack of distance-decay in a bat—helminth system

description: Increasing community dissimilarity across geographic distance has been
 described for a wide variety of organisms and understanding its underlying
 causes is key to understanding mechanisms driving patterns of
 biodiversity. Both niche-based and neutral processes may produce a
 distance decay relationship; however, disentangling their relative
 influence requires simultaneous examination of multiple potential drivers.
 Parasites represent a unique opportunity in which to study distance decay
 because community dissimilarity may depend on environmental requirements
 and dispersal capability of parasites as well also those of their hosts.
 We used big brown bats Eptesicus fuscus and their intestinal helminths to
 investigate: 1) independent contributions of geographic and environmental
 distances on dissimilarity of intestinal helminth component communities
 between populations of big brown bats; 2) which environmental variables
 best explained variation in community dissimilarity; and 3) whether
 similar patterns of decay with geographic or environmental distance were
 observed for within-host population and within-individual host parasite
 communities. We used compositional measures of community dissimilarity to
 examine how parasite communities may change with geographic distance and
 varying environmental conditions. Non-spatial variables strongly
 influenced compositional parasite community dissimilarity over multiple
 community scales, and we observed little evidence for spatial processes
 such as distance decay. Environment surrounding roost sites better
 predicted helminth community dissimilarity than any other class of
 variables and landcover classes representing anthropogenic modification
 consistently explained variation in community structure. Our results
 indicate that human disturbance drives significant patterns of parasite
 community dissimilarity, most likely by changing the presence or abundance
 of intermediate hosts in an area.
description: Geographic Distances
 Between Study SitesThis file contains a
 matrix of geographic distances between study sites in
 kilometers.Dryad Geog Distances Between
 Sites.xlsxHelminth Species And
 Host CharacteristicsThis file contains the
 identity and number of helminths discovered in each individual host as
 well as the demographic characteristics of each host.Dryad Helminth
 Species.xlsxStudy Site Nonspatial
 Explanatory VariablesThis file contains
 landcover and climatic data relevant to each study
 site.Dryad
 Nonspatial Explanatory Variables.xlsx
DOI: 10.5061/dryad.4d3n1
title: Data from: Are migratory behaviours of bats socially transmitted?

description: To migrate, animals rely on endogenous, genetically inherited programmes,
 or socially transmitted information about routes and behaviours, or a
 combination of the two. In long-lived animals with extended parental care,
 as in bats, migration tends to be socially transmitted rather than
 endogenous. For a young bat to learn migration via social transmission,
 they would need to follow an experienced individual, most likely one
 roosting nearby. Therefore, we predicted that bats travelling together
 originate from the same place. It is also likely that young bats would
 follow their mothers or other kin, so we predicted that bats travelling
 together are more closely related to each other than bats not travelling
 together. To test our predictions, we used microsatellite genotypes and
 stable isotope values of δ13C, δ15N and δ2H to analyse the relatedness and
 geographical origins of migrating hoary bats (Lasiurus cinereus/Aeorestes
 cinereus (Baird et al. 2015 J. Mammal. 96, 1255–1274
 (doi:10.1093/jmammal/gyv135)); n = 133) and silver-haired bats
 (Lasionycteris noctivagans; n = 87) killed at wind turbines over two
 consecutive autumn migrations. Contrary to our predictions, there was no
 evidence that related dyads of hoary bats or silver-haired bats were
 killed on the same night more frequently than expected by chance, or that
 the number of days between the fatalities of dyad members was influenced
 by relatedness or latitude of origin. Our data suggest that these bats do
 not socially transmit migration routes and behaviours among close kin.
description: genotypes of 132 hoary
 bats and 87 silver-haired bats from Alberta, CanadaExcel file containing
 genotypes of 132 hoary bats (Lasiurus cinereus) and 87 silver-haired bats
 (Lasionycteris noctivagans) collected at a wind energy facility in
 south-western Alberta, Canada in 2006 and 2007. Hoary bats were genotyped
 at 19 loci and silver-haired bats at 18 loci. This data was used to
 determine relatedness of individuals, so includes the year the individual
 was killed and their age/sex.genotypes.xlsx
DOI: 10.5061/dryad.3v321
title: Data from: Maternal-fetal genomic conflict and speciation: no evidence for hybrid placental dysplasia in crosses between two house mouse subspecies

description: Interspecific hybridization between closely related mammalian species,
 including various species of the genus Mus, is commonly associated with
 abnormal growth of the placenta and hybrid fetuses, a phenomenon known as
 hybrid placental dysplasia (HPD). The role of HPD in speciation is
 anticipated but still poorly understood. Here we studied placental and
 fetal growth in F1 crosses between four inbred mouse strains derived from
 two house mouse subspecies, Mus musculus musculus and M. m. domesticus.
 These subspecies are in the early stage of speciation and still hybridize
 in nature. In accordance with the maternal-fetal genomic conflict
 hypothesis we found different parental influences on placental and fetal
 development, with placental weight most affected by the father's body
 weight, and fetal weight by the mother's body weight. After removing
 the effects of parents’ body weight, we did not find any significant
 differences in fetal or placental weights between intra-subspecific and
 inter-subspecific F1 crosses. Nevertheless, we found that the variability
 in placental weight in inter-subspecific crosses is linked to the X
 chromosome, similarly as for HPD in interspecific mouse crosses. Our
 results suggest that maternal-fetal genomic conflict occurs in the house
 mouse system, but has not yet diverged sufficiently to cause abnormalities
 in placental and fetal growth in inter-subspecific crosses. HPD is thus
 unlikely to contribute to speciation in the house mouse system. However,
 we cannot rule out that it might have contributed to other speciation
 events in the genus Mus, where differences in the levels of polyandry
 exist between the species.
description: Kropackova-et-al-dataData on fetal and placental weights in F1 crosses and backcrosses. X chromosome genotypes of backcross individuals.
DOI: 10.5061/dryad.3p21q
title: Data from: Brown and polar bear Y chromosomes reveal extensive male-biased gene flow within brother lineages

description: Brown and polar bears have become prominent examples in phylogeography,
 but previous phylogeographic studies relied largely on maternally
 inherited mitochondrial DNA (mtDNA) or were geographically restricted. The
 male-specific Y chromosome, a natural counterpart to mtDNA, has remained
 under-explored. Although this paternally inherited chromosome is
 indispensable for comprehensive analyses of phylogeographic patterns,
 technical difficulties and low variability have hampered its application
 in most mammals. We developed 13 novel Y-chromosomal sequence and
 microsatellite markers from the polar bear genome, and screened these in a
 broad geographic sample of 130 brown and polar bears. We also analyzed a
 390 kb-long Y-chromosomal scaffold using sequencing data from published
 male ursine genomes. Y chromosome evidence support the emerging
 understanding that brown and polar bears started to diverge no later than
 the Middle Pleistocene. Contrary to mtDNA patterns, we found (i) brown and
 polar bears to be reciprocally monophyletic sister (or rather brother)
 lineages, without signals of introgression, (ii) male-biased gene flow
 across continents and on phylogeographic time scales, and (iii) male
 dispersal that links the Alaskan ABC-islands population to mainland brown
 bears. Due to female philopatry, mtDNA provides a highly structured
 estimate of population differentiation, while male-biased gene flow is a
 homogenizing force for nuclear genetic variation. Our findings highlight
 the importance of analyzing both maternally and paternally inherited loci
 for a comprehensive view of phylogeographic history, and that mtDNA-based
 phylogeographic studies of many mammals should be re-evaluated. Recent
 advances in sequencing technology render the analysis of Y chromosomal
 variation feasible, even in non-model organisms.
description: Y STR Allele
 sizesA table of allele sizes
 of 9 Y STR markers from 134 individualsSubmission DRYAD allele
 sizes.xlsx
DOI: 10.5061/dryad.84fk9
title: Data from: A dynamical model for invasive round goby populations reveals efficient and effective management options

description: 1. When prevention of invasive species’ introductions fails, society faces
 the challenge to manage these invasive species in an effective and
 efficient way. The success of this depends on biological aspects and on
 cooperation between decision makers and scientists. Using the case of the
 round goby Neogobius melanostomus, one of Europe’s worst invasive species,
 we propose an approach guiding scientists to co-produce effective and
 efficient population control measures in collaboration with decision
 makers. 2. We surveyed the effectiveness, urgency and simplicity perceived
 by decision makers as well as the support of two population control
 options: removal of eggs and/or adults. Using a field study and a
 dynamical population model, we investigated the effectiveness and
 efficiency for both options in different population contexts. 3. Decision
 makers initially seemed to lack a clear preference for either control
 option. After being presented with preliminary field and modelling
 results, decision makers mostly approved measures being developed to
 implement the two control options. 4. Starting population control early
 after detecting the species requires in total fewer years for eradication
 than controlling an established population: to reach an eradication
 success rate of 95%, 13 years for early start vs. 18 years for late start
 are needed when removing eggs and adults; when removing adults only, 20
 vs. 29 years are needed. Removing eggs and adults combined results in a
 yearly effort of 5.01 h m-2, while removing adults only results in a
 yearly effort of 1.76 h m-2. Thus, removing adults only proved to be the
 most efficient option to eradicate the population. Nonetheless,
 considerable effort is needed: when removing less than 57% of the adult
 population, eradication is not feasible, even assuming low survival and
 fecundity rates for the population. Further, inflow of new propagules
 renders eradication efforts ineffective. 5. Synthesis and applications.
 Scientists who aim to support decision makers in finding an optimal
 control strategy for invasive species need to be able to provide
 scientific knowledge on effectiveness and efficiency of different options.
 For round goby and most non-native species, eradication is only feasible
 if started early in recently arrived populations and if inflow of new
 propagules can be prevented.
description: Literature review for
 goby population modelData gathered in a
 systematic literature review to parameterise a dynamical population model
 for invasive round goby populations.N'Guyen_et_al_2017_lit_review_for_population_model_invasive_round_goby.xlsx
DOI: 10.5061/dryad.1358
title: Data from: Evidence for a discrete evolutionary lineage within Equatorial Guinea suggests that the tsetse fly Glossina palpalis palpalis exists as a species complex

description: Tsetse flies of the palpalis group are major vectors of Human African
 Trypanosomiasis in Africa. Accurate knowledge of species identity is
 essential for vector control. Here we combine ribosomal internal
 transcribed spacer 1 (ITS1), mitochondrial Cytochrome Oxidase 1 (COI) and
 microsatellites to determine the population structure and phylogenetic
 relations of G. p. palpalis in Equatorial Guinea. COI sequence data
 suggest that G. p. palpalis in Equatorial Guinea are a distinct subspecies
 from previously described G. p. palpalis in West Africa and Democratic
 Republic of Congo. G. p. palpalis in Equatorial Guinea and DRC share a
 common ancestor which diverged from West African G. p. palpalis around 1.9
 million years ago. Previous ITS1 length polymorphism data suggested the
 possible presence of hybrids in Equatorial Guinea. However, ITS1 showed
 incomplete lineage sorting compared to clearly defined COI groups, and
 data from twelve unlinked microsatellites provided no evidence of
 hybridization. Microsatellite data indicated moderate but significant
 differentiation between the populations analysed (Rio Campo, Mbini and
 Kogo). Moreover, unlike previous studies of G. p. palpalis, there was no
 evidence for heterozygote deficiency, presence of migrants, or cryptic
 population structure. Variance effective population size at Rio Campo was
 estimated at 501 to 731 assuming 8 generations/year. This study of the
 population genetics of G. p. palpalis in central Africa provides the first
 estimate of genetic differentiation between geographically separated G. p.
 palpalis populations.
description: GlossinaGUEQ_allgenotypesGENEPOP.txtGlossinaGUEQ_Gpp_GENEPOP.txt
DOI: 10.5281/zenodo.18383627
title: "SEMANTIC AND PRAGMATIC DIFFERENTIATION IN JAPANESE CONDITIONAL CLAUSES"

description: This article is devoted to the study of semantic and pragmatic differentiation of conditional complex sentences in the Japanese language. It analyzes the subtle semantic differences between conditional markers such as ~と, ~ば, ~たら, and ~なら. The study examines not only the grammatical aspects of these constructions but also their dependence on the speaker's subjective attitude, intentions, and the specific speech situation (pragmatics). Specifically, the distinction between hypothetical and real conditions is compared, as well as the use of conditional forms to convey advice, commands, or predictions. The aim of the article is to identify the patterns of usage for conditional forms—one of the most complex areas of Japanese grammar—and to reveal their synonymic and differential characteristics in various contexts.
DOI: 10.5281/zenodo.18383626
title: "SEMANTIC AND PRAGMATIC DIFFERENTIATION IN JAPANESE CONDITIONAL CLAUSES"

description: This article is devoted to the study of semantic and pragmatic differentiation of conditional complex sentences in the Japanese language. It analyzes the subtle semantic differences between conditional markers such as ~と, ~ば, ~たら, and ~なら. The study examines not only the grammatical aspects of these constructions but also their dependence on the speaker's subjective attitude, intentions, and the specific speech situation (pragmatics). Specifically, the distinction between hypothetical and real conditions is compared, as well as the use of conditional forms to convey advice, commands, or predictions. The aim of the article is to identify the patterns of usage for conditional forms—one of the most complex areas of Japanese grammar—and to reveal their synonymic and differential characteristics in various contexts.
DOI: 10.5061/dryad.g7k8j6v
title: Data from: Luck in food-finding affects individual performance and population trajectories

description: Energy harvesting by animals is important because it provides the power
 needed for all metabolic processes. Beyond this, efficient food-finding
 enhances individual fitness [1] and population viability [2], although
 rates of energy accumulation are affected by the environment and food
 distribution. Typically, differences between individuals in the rate of
 food acquisition are attributed to varying competencies [3] even though
 food encounter rates are known to be probabilistic [4]. We used
 animal-attached technology to quantify food intake in four disparate
 free-living vertebrates (condors, cheetahs, penguins and sheep) and found
 that inter-individual variability depended critically on the probability
 of food encounter. We modelled this to reveal that animals taking rarer
 food, such as apex predators and scavengers, are particularly susceptible
 to breeding failure because this variability results in larger proportions
 of the population failing to accrue the necessary resources for their
 young before they starve, and because even small changes in food abundance
 can affect this variability disproportionately. A test of our model on
 wild animals indicated why Magellanic penguins have a stable population
 while the congeneric African penguin population has declined for decades.
 We suggest that such models predicting probabilistic ruin can help predict
 the fortunes of species operating under globally changing conditions.
description: Data on feeding
 ratesExcel data file with
 rates of food ingestion from 5 different speciesAll animal
 data.xlsx
DOI: 10.5061/dryad.64313
title: Data from: Stress effects on mood, HPA axis, and autonomic response: comparison of three psychosocial stress paradigms

description: Extensive experimental psychology research has attempted to parse the
 complex relationship between psychosocial stress, mood, cognitive
 performance, and physiological changes. To do so, it is necessary to have
 effective, validated methods to experimentally induce psychosocial stress.
 The Trier Social Stress Test (TSST) is the most commonly used method of
 experimentally inducing psychosocial stress, but it is resource intensive.
 Less resource intense psychosocial stress tasks include the Socially
 Evaluative Cold Pressor Task (SECPT) and a computerized mental arithmetic
 task (MAT). These tasks effectively produce a physiological and
 psychological stress response and have the benefits of requiring fewer
 experimenters and affording data collection from multiple participants
 simultaneously. The objective of this study was to compare the magnitude
 and duration of these three experimental psychosocial stress induction
 paradigms. On each of four separate days, participants completed either a
 control non-stressful task or one of the three experimental stressors: the
 TSST, SECPT, or MAT. We measured mood, working memory performance,
 salivary cortisol and alpha-amylase (AA), and heart rate. The TSST and
 SECPT exerted the most robust effects on mood and physiological measures.
 TSST effects were generally evident immediately post-stress as well as 10-
 and 20-minutes after stress cessation, whereas SECPT effects were
 generally limited to the duration of the stressor. The stress duration is
 a key determinant when planning a study that utilizes an experimental
 stressor, as researchers may be interested in collecting dependent
 measures prior to stress cessation. In this way, the TSST would allow the
 investigator a longer window to administer tasks of interest.
description: Stress effects on mood,
 working memory, and physiological stress responseMean values for mood
 (Profile of Mood States; POMS), heart rate (HR), cortisol (Cort),
 alpha-amylase (AA), and N-Back (NB) working memory, including hit rate,
 response time, and sensitivity, for each stress paradigm (TSST,SECPT, MAT,
 Control) and time point.Giles_PLOS_Data.xlsx
DOI: 10.5061/dryad.1fk40
title: Data from: The phenotypic correlates and quantitative genetics of masculinization in the rodent, Octodon degus

description: In some mammals female characteristics have been shown to depend in part
 on the intrauterine position during development of female fetuses relative
 to male fetuses. Females developing in close proximity to males show
 behavioural, physiological and life history characteristics that are
 masculinized. With the exception of one inconclusive study, nothing is
 known of the genetic basis of this phenomenon. In this paper we reported
 an analysis of the quantitative genetic basis of masculinization, as
 indicated by the anogenital distance (AGD) at birth and weaning, in the
 rodent Octodon degus. Because AGD is related to weight we included a
 genetic analysis of pup weight at birth and weaning. Pairwise correlations
 showed that AGD at birth varied negatively with litter size and
 parturition number but positively with weaning AGD, birth weight, dam AGD
 and percentage of males in the litter. AGD at weaning varied similarly
 except that it tended to vary positively with litter size. Genetic
 (co)variances of AGD at birth and weight at birth differed in females and
 males. In females the best genetic model included substantial effects of
 direct additive, additive maternal and a negative additive genetic
 covariance between these two. In males variances were small and there was
 difficulty in discriminating between additive maternal and common
 environmental variances. By weaning genetic (co)variances had somewhat
 declined in weight and were not statistically significant in AGD in either
 sex. This paper showed the occurrence of both phenotypic and genetic
 components in masculinization with effects being greater in females.
description: Degus data Dryad
 submissionData for analysis of AGD
 and wt in Degus
DOI: 10.5061/dryad.85dn7
title: Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses

description: In rapidly changing environments, selection history may impact the
 dynamics of adaptation. Mutations selected in one environment may result
 in pleiotropic fitness trade-offs in subsequent novel environments,
 slowing the rates of adaptation. Epistatic interactions between mutations
 selected in sequential stressful environments may slow or accelerate
 subsequent rates of adaptation, depending on the nature of that
 interaction. We explored the dynamics of adaptation during sequential
 exposure to herbicides with different modes of action in Chlamydomonas
 reinhardtii. Evolution of resistance to two of the herbicides was largely
 independent of selection history. For carbetamide, previous adaptation to
 other herbicide modes of action positively impacted the likelihood of
 adaptation to this herbicide. Furthermore, while adaptation to all
 individual herbicides was associated with pleiotropic fitness costs in
 stress-free environments, we observed that accumulation of resistance
 mechanisms was accompanied by a reduction in overall fitness costs. We
 suggest that antagonistic epistasis may be a driving mechanism that
 enables populations to more readily adapt in novel environments. These
 findings highlight the potential for sequences of xenobiotics to
 facilitate the rapid evolution of multiple-drug and -pesticide resistance,
 as well as the potential for epistatic interactions between adaptive
 mutations to facilitate evolutionary rescue in rapidly changing
 environments.
description: MLagator Selection
 History and Epistasis Raw DataThis file contains the
 data for the rates of evolutionary rescue that were used for survival
 analysis. It also contains the growth rate data in the absence of
 herbicides, used to estimate fitness costs associated with
 resistance.