cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jvrc74
title: Occurrence Download

description: A dataset containing 10348 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Thinocorus orbignyianus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 10348 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072068-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/80f-b99-2qs
title: Carex riparia Curtis

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/r3p-s8g-11s
title: Plantago coronopus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/6lp-l9v-n52
title: Sisymbrium officinale (L.) Scop.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/kbs-kv1-zdp
title: Carex vesicaria L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/2ma-ae7-hsr
title: Ranunculus macrophyllus Schur

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/cj3-c6f-csn
title: Vicia bithynica (L.) L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ygl-jyq-2vf
title: Stachys ocymastrum (L.) Briq.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/91y-wkd-mtj
title: Carex cespitosa L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/x9j-3nb-17d
title: Gundelia mesopotamica Firat

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.jmquw4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Benthophilus svetovidovi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072074-250717081556266/datasets/export for details.
DOI: 10.3535/kt8-5cr-q2w
title: Typha domingensis Pers.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/t4y-p19-gxm
title: Phleum pratense L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.pyb739
title: Occurrence Download

description: A dataset containing 821 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tropaeolum majus",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 821 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072072-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/a84-gml-yvg
title: Typha latifolia L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/lfc-mb6-4n9
title: Echinochloa crus-galli (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/1tw-nr7-n8f
title: Gundelia mesopotamica Firat

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/144-3hy-s1k
title: Bupleurum semicompositum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/lel-0rs-ms7
title: Vicia villosa subsp. ambigua (Guss.) Kerguélen

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/cb4-1ba-v5q
title: Carex acutiformis Ehrh.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hew-x2q-c0f
title: Kickxia spuria (L.) Dumort.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/5ea-nln-yr1
title: Stachys L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/sr2-jnf-kbh
title: Haplophyllum ptilostylum Spach

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/0ck-hl7-g6s
title: Typha domingensis Pers.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.5967/6q49-xt78
title: Negative Cooperativity Biochemical Data (Zlotnick Lab)
DOI: 10.15468/dl.njkkam
title: Occurrence Download

description: A dataset containing 736 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Procellariiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-140 40,-130 40,-130 50,-140 50,-140 40))"
 ]
}

 The dataset includes 736 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024058-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26008/1912/bco-dmo.948396.4
title: Dark DIC Fixation Rates collected from CliOMZ AT50-10 in the Eastern Pacific Ocean from May to June 2023 (CliOMZ project)

description: These data include dark dissolved inorganic carbon (DIC) fixation rates measured on R/V Atlantis (CliOMZ AT50-10 expedition) from Golfito, Costa Rica to San Diego, USA in May-June 2023.  We aimed at quantifying dark DIC fixation rates associated with nitrification by specifically inhibiting ammonia-oxidizing microorganisms. Instruments used were a CTD profiler and a scintillation counter (Perkin-Elmer Tri-Carb 2910 TR).
DOI: 10.26008/1912/bco-dmo.961971.1
title: Stable isotope ratios in eye lens tissues of individuals of three species of fish from the Matagorda Bay region of Texas in the northwestern Gulf of Mexico from 2021 to 2023

description: This dataset describes the stable isotope ratios in eye lens tissues of individuals of three fish species (Red Drum Sciaenops ocellatus, Southern Flounder Paralichthys lethostigma, and Atlantic Croaker Micropogonias undulatus) in the Matagorda Bay region of Texas in the northwestern Gulf of Mexico.
DOI: 10.26008/1912/bco-dmo.962569.1
title: Geochemical concentrations of elements measured in transects across otoliths of three Gulf of Mexico fish species collected from 2021-2023

description: This dataset describes the chemical composition of otoliths of three fish species (Red Drum Sciaenops ocellatus, Southern Flounder Paralichthys lethostigma, and Atlantic Croaker Micropogonias undulatus) collected in the Matagorda Bay region of Texas in the northwestern Gulf of Mexico. Otoliths were sectioned and analysed using laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) to obtain continuous core-to-edge transects of elemental variation across growth increments.
DOI: 10.26008/1912/bco-dmo.949801.1
title: Data from samples collected at four sites experiencing upwelling off the coast of Northern California in May and June of 2019

description: The primary objective of this study aims to examine and compare the dynamics of phytoplankton blooms at different stages of upwelling. We combined environmental and physiological observations to put together a narrative of phytoplankton community succession. In doing so, we postulate that the four stations sampled represent a mosaic of different stages of relatively early upwelling cycles such that they can be classified as either the initial onset of upwelling (early stage, denoted by E1) in which the subsurface community only recently transitioned to the surface, or the relatively later phases (later stage, denoted by L2, L3, and L4) where the community has just started to build up biomass and is undergoing the &quot;shift-up&quot; response. 

Four sites experiencing upwelling were sampled off the coast of Northern California on May 30, 2019 (E1 and L2) and June 05, 2019 (L3 and L4). Seawater was collected using a CTD-Rosette sampler, at four depths throughout the euphotic zone at each station corresponding to 50%, 30%, 10%, and 1% incident irradiance. Samples for temperature, salinity, PAR, chlorophyll a, dissolved inorganic nutrients, dissolved metal micronutrients, and physiology were obtained. PUPCYCLE I (Phytoplankton response to the UPwelling CYCLE) took place in summer 2019 onboard the R/V Oceanus (OC 1905b), led by Chief Scientist Adrian Marchetti.
DOI: 10.26008/1912/bco-dmo.961706.1
title: Stable isotope compositions (carbon, nitrogen, and sulfur) of muscle tissue in three species of fish from the Matagorda Bay region of Texas in the northwestern Gulf of Mexico from 2021 to 2023

description: This dataset describes stable isotope compositions (carbon, nitrogen, and sulfur) of muscle tissue in three species of fish (Red Drum Sciaenops ocellatus, Southern Flounder Paralichthys lethostigma, and Atlantic Croaker Micropogonias undulatus) in the Matagorda Bay region of Texas in the northwestern Gulf of Mexico. Fish carcasses were obtained from anglers at boat docks, fish cleaning stations, or other locations in the region. Fish were also obtained from bait shops where the proprietors verified the fish were sourced from the Matagorda Bay study region. These fish will be dissected to subsample white muscle tissue from each fish (skin and scales removed). Muscle samples were then dried, pulverized, and analyzed for stable isotope compositions to assess potential shifts in dietary or habitat-specific residence patterns within and between species. This dataset is part of a larger project assessing fish dietary and habitat use patterns in response to environmental stressors including hypoxia and pollutant accumulation.
DOI: 10.15468/dl.nfxgf5
title: Occurrence Download

description: A dataset containing 375 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Dipteryx"
 ]
}

 The dataset includes 375 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021509-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00006801.1
title: Available IPD datapackage for study 'A Phase 2 Efficacy And Safety Study Of SU011248 Administered In A Continuous Daily Regimen In Patients With Cytokine-Refractory Metastatic Renal Cell Carcinoma'

description: To evaluate the anti-tumor activity of SU011248 (sunitinib) in cytokine-refractory metastatic renal cell carcinoma (RCC) when administered in a continuous treatment regimen
DOI: 10.26008/1912/bco-dmo.906562.2
title: Water characteristics measured in Narragansett Bay over two years, from March 2021 to September 2023

description: This dataset includes basic water characteristics measured in Narragansett Bay (Rhode Island, USA) over two years as part of a study of the dynamics of marine cyanobacteria (Synechococcus) and viruses infecting cyanobacteria (cyanophage) in this estuarine ecosystem. The project principal investigators include Nathan Ahlgren (Clark University) and Marcie Marston (Roger Williams University), and the latter collected the data and water with the assistance of students and/or technicians. Water was sampled and measured once per week for a span of two and a half years. Water was sampled from a dock located on the campus of Roger Williams University (RWU) at an approximate latitude and longitude coordinates of 41.649737, -71.256378. Water was collected on an incoming tide in the morning and the following parameters were measured: water temperature, salinity, in situ chlorophyll a, nitrate + nitrite, phosphate, and silicate. Water samples were collected and preserved for measurement of Synechococcus abundance by flow cytometry at a later date.
DOI: 10.26008/1912/bco-dmo.949788.1
title: Incubation experiments to assess the physiological and molecular response of subsurface phytoplankton communities to a simulation of the Upwelling Conveyor Belt Cycle (UCBC) conducted in summer 2019 onboard the R/V Oceanus (OC1905b)

description: The primary objective of this study was to assess the physiological and molecular response of subsurface phytoplankton communities to a simulation of the Upwelling Conveyor Belt Cycle (UCBC). To capture this phenomenon, we performed on-deck incubation experiments that spanned different time points representing the different stages of growth (initial deep-water community at T0, and stimulated growth phases at T1 and T2). We further subjected the incubations to various Fe-related treatments to test how Fe might play a role in determining their physiological and molecular response to upwelling. 

The first incubation was conducted from 27 May to 01 June 2019 in a wide continental shelf, and the second incubation was conducted from 02 June to 06 June 2019 in a narrow continental shelf. For each time point, the incubation was harvested and analyzed for chlorophyll, nutrients, particulate organic carbon and nitrogen, and dissolved and particulate Fe and Sc concentrations. 6-hour incubations using trace concentrations of stable isotopes of 13C and 15N were also conducted to assess uptake kinetics of dissolved inorganic carbon (DIC) and nitrate (NO3) in bulk-size fractionated phytoplankton communities. PUPCYCLE I (Phytoplankton response to the UPwelling CYCLE) took place in summer 2019 onboard the R/V Oceanus (OC1905b), led by Chief Scientist Adrian Marchetti.
DOI: 10.26008/1912/bco-dmo.969427.1
title: Incomplete assimilatory nitrate reduction by LLI Prochlorococcus in response to nutrient stress.

description: These data include Prochlorococcus cell density, nitrate (NO3-) and nitrite (NO2-) concentration, and fluorometry data for experiments that examined nitrite production by LLI Prochlorococcus following a pulse of nitrate under stress conditions. The conditions evaluated included nitrogen limitation.
DOI: 10.26008/1912/bco-dmo.960575.1
title: Sulfate triple oxygen isotope signatures in Messinian evaporite and barite from cores collected

description: These data include the triple oxygen isotope compositions (Delta'17O and delta18O) of marine sulfate minerals, including Messinian-age evaporite, Messinian-age barite, and modern barite. Samples were collected from outcrop (Messinian evaporite from the Caltanissetta and Sorbas Basins) as well as from Integrated Ocean Drilling Program (IODP) cores (evaporite from the Tyrrhenian Basin, and all barite). Instruments used to measure the oxygen isotope compositions included a High Temperature Conversion Elemental Analyzer (TC/EA) coupled to a Delta V Plus Isotope Ratio Mass Spectrometer (IRMS) and a custom built laser fluorination line coupled to a 253 Plus IRMS, in the Johnston lab at Harvard University. These measurements contributed to our understanding of how closely marine evaporite sulfate records reflect ancient seawater sulfate isotope composition and the degree to which sulfate within an evaporite basin is microbially cycled. Anna Waldeck and Haley Olson, both students in David Johnston's lab, measured the oxygen isotope compositions.
DOI: 10.26008/1912/bco-dmo.964227.1
title: 16S rRNA gene amplicon sequences metadata collected from water samples and biofilms on mineral substrates deployed in the Lau Basin (Tonga) during  R/V Thompson cruise TN401 from Mar to Apr 2022

description: 16S rRNA gene amplicon sequences were generated from biofilms present on crushed substrates deployed at Lau Basin hydrothermal vents for approximately two weeks during R/V Thompson cruise TN401 from March to April 2022, typically in diffuse fluid flow. 16S rRNA gene amplicon sequences were generated from seawater or hydrothermal fluid samples collected on to filters via deployed instruments on ROV Jason. This dataset contains NCBI accession metadata and sample collection information.
DOI: 10.26008/1912/bco-dmo.969513.1
title: Incomplete assimilatory nitrate reduction by LLI Prochlorococcus in response to light and temperature stress.

description: These data include Prochlorococcus cell density, nitrate (NO3-) and nitrite (NO2-) concentration, and fluorometry data for experiments that examined nitrite production by LLI Prochlorococcus following a pulse of nitrate under stress conditions. The conditions evaluated included light shock, and temperature shock.
DOI: 10.15468/dl.rbcp3c
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lilium bakerianum rubrum"
 ]
}

 The dataset includes 58 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021512-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26008/1912/bco-dmo.964236.1
title: NCBI Metagenomic metadata for Lau Basin (Tonga) mollusc gill tissue collected on R/V Thompson cruises TN235 and TN401 and R/V Falkor cruise FK160407 between May 2009 and Apr 2022

description: Metagenomic sequence data from Lau Basin hydrothermal vent mollusc gill tissues that contain chemosynthetic bacterial symbionts. Samples were collected between May 2009 to April 2022 using the ROV Jason aboard R/V Thompson cruises TN235 (May-June 2009) and TN401 (April 2016) and R/V Falkor cruise FK160407 (April 2022) for population and comparative genomics analysis of host animal and bacterial symbionts.
DOI: 10.26008/1912/bco-dmo.970402.1
title: Nitrogen isotopic ratios of individual amino acids extracted from size-fractionated particulate organic matter aboard the R/V Kilo Moana in February (cruise KM1407) and September (cruise KM1418) 2014 at Station ALOHA

description: The data include nitrogen isotopic ratios of individual amino acids extracted from size-fractionated particulate organic matter collected between the surface and 1200 m in the water column at Station ALOHA. Particle samples were collected via sequential size fractionation using McLane in-situ pumps on two cruises conducted aboard the R/V Kilo Moana in February (KM1407) and September (KM1418) 2014. Data were collected as part of a project focused on characterizing sources of nutrition for the mesopelagic animal food web, for which particulate organic matter was a crucial baseline resource. In addition, differences in the nitrogen isotopic ratios of individual amino acids from particle size fractions and over depth provide insight into phytoplankton origins and microbial or zooplankton alteration of particulate matter involved in carbon export. Compound-specific isotopic data and amino acid quantities were collected using gas chromatography-isotope ratio mass spectrometry, and bulk isotopic data and quantities were collected using elemental analysis-isotope ratio mass spectrometry, both at University of Hawaii. Dr. Hilary Close (former affiliation: University of Hawaii, current affiliation: University of Miami) was the primary investigator involved in sampling and analysis of data presented here.
DOI: 10.26008/1912/bco-dmo.859990.6
title: Discrete bottle data from Hydrostation S in the Sargasso Sea from January 1955 through December 2024

description: Data presented here are discrete bottle samples from the Hydrostation S (or Panulirus) time series site located 20 km SE of Bermuda (32°10’N, 64°30’W) in the Sargasso Sea for January 1955 (cruise #9) through December 2024 (cruise #1490). Measurements were collected at near biweekly intervals where possible depending on weather and ship availability. Prior to the arrival of Weatherbird I in 1983, station occupation during winter months was limited due to the sea-going capabilities of the former vessels. The standard sample parameter list has been mostly consistent for the full time-series record and includes temperature, salinity, and dissolved oxygen. Since October 1988 (cruise #643), data and samples have been collected using a SeaBird 911+ CTD and integrated Niskin rosette system. The largest data gap of almost one year was due to the loss of all the Niskin bottles and reversing thermometers following a break in the hydro wire on station #463 (April 1979).
DOI: 10.26008/1912/bco-dmo.917255.7
title: Discrete bottle samples collected during BATS Validation (BVAL) cruises from April 1991 through July 2024

description: Data presented here are discrete bottle samples for BATS validation (BVAL) cruise 50001 (April 1991) through BVAL cruise 50061 (June/July 2024). The sample parameter list has been mostly consistent for the full time-series record and includes: salinity, dissolved oxygen, dissolved inorganic carbon, alkalinity, nutrients (nitrate + nitrite, nitrite, phosphate, silicate), particulate organics (carbon, nitrogen, phosphorous), particulate silicate, total organic carbon and nitrogen, total dissolved phosphorus, bacterial enumeration, and flow cytometry counts of picoplankton.
DOI: 10.26008/1912/bco-dmo.970545.1
title: Nitrifier Abundances from R/V Atlantis AT50-10 in the Eastern Tropical and Subtropical Pacific Ocean from May 2023 (CliOMZ project)

description: These data include nitrifier abundances measured on R/V Atlantic (CliOMZ AT50-10 expedition) from Golfito, Costa Rica to San Diego, USA in May-June 2023. Instruments used were a CTD profiler and a quantitative PCR machine.
DOI: 10.26008/1912/bco-dmo.969903.1
title: Phytoplankton growth and grazing rates from in situ incubated dilution experiments conducted on cruise RR2201 on R/V Roger Revelle from Jan to Feb 2022 in the Argo Basin region off NW Australia

description: This dataset contains pigment-based rate estimates of phytoplankton growth and microzooplankton grazing from in situ incubated dilution experiments conducted on cruise RR2201 on R/V Roger Revelle (BLOOFINZ-IO, January-February 2022) in the Argo Basin region off NW Australia.
DOI: 10.26008/1912/bco-dmo.969909.1
title: Bacteria growth and grazing rates based on flow cytometry cell counts from in situ incubated dilution experiments conducted on cruise RR2201 on R/V Roger Revelle from Jan to Feb 2022 in the Argo Basin region off NW Australia

description: This dataset contains growth and grazing rates of bacteria based on flow cytometry cell counts from in situ incubated dilution experiments conducted on cruise RR2201 on R/V Roger Revelle (BLOOFINZ-IO, January-February 2022) in the Argo Basin region off NW Australia.
DOI: 10.26008/1912/bco-dmo.948396.3
title: Dark DIC Fixation Rates collected from CliOMZ AT50-10 in the Eastern Pacific Ocean from May to June 2023 (CliOMZ project)

description: These data include dark dissolved inorganic carbon (DIC) fixation rates measured on R/V Atlantis (CliOMZ AT50-10 expedition) from Golfito, Costa Rica to San Diego, USA in May-June 2023.  We aimed at quantifying dark DIC fixation rates associated with nitrification by specifically inhibiting ammonia-oxidizing microorganisms. Instruments used were a CTD profiler and a scintillation counter (Perkin-Elmer Tri-Carb 2910 TR).