cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4015349
title: Supplementary Dataset for "Representativeness of Eddy-Covariance Flux Footprints for Areas Surrounding AmeriFlux Sites"

description: These datasets are supplementary to the paper "<strong>Representativeness of Eddy-Covariance Flux Footprints for Areas Surrounding AmeriFlux Sites</strong>" by Chu et al. Dataset S1. Summary of site-specific footprint metrics filename: All_site_fpt_summary.csv readme: All_site_fpt_summary-README.csv Dataset S2. All monthly footprint climatology weight maps filename: monthly_footprint_climatology_weight_map.zip the zip folder contains individual files of all monthly footprint weight maps filename: &lt;Site-ID&gt;_&lt;Year&gt;_&lt;Month&gt;_&lt;DAY/NIGHT&gt;_fpt_weight.tif readme: README.txt Dataset S3. All site-year footprint climatology overlapped with true-color satellite images. filename: site-year_footprint_climatology_realcolor_map.zip the zip folder contains individual files of footprint climatologies from all site-years filename: &lt;Site-ID&gt;_&lt;Year&gt;_&lt;Spatial_Extent&gt;_shrink_footprint_climatology.png readme: README.txt Dataset S4. Site-specific results and representativeness index based on the land cover type analysis. filename: All_site_land_cover_dominant_summary2.csv readme:All_site_land_cover_dominant_summary2-README.csv Dataset S5. Site-specific results and representativeness index based on the EVI analysis. filename: All_site_Landsat_EVI_fpt_comparison2.csv readme: All_site_Landsat_EVI_fpt_comparison2-README.csv Dataset S6. All available site-month EVI and time-explicit representativeness. filename: All_site_Landsat_EVI_all_cutout2.csv readme: All_site_Landsat_EVI_all_cutout2-README.csv
DOI: 10.5281/zenodo.4329899
title: Data and code for "A Linear Time Solution to the Labeled Robinson-Foulds Distance Problem"

description: <strong>Data and code for "A Linear Time Solution to the Labeled Robinson-Foulds Distance Problem"</strong> Samuel Briand, Christophe Dessimoz, Nadia El-Mabrouk, Yannis Nevers <strong>Experimental data</strong> The __ALF\_Output__ directory contains the results obtained from ALF with parameters specified in the paper, as well as additional files generated in the downstream analysis (see below) The __Partitions__ directory contains one directory by partitioning of the 100 species from ALF in nested sets. Each contains three folder and a file. The summary.txt directory report which family are part of the nested set. The Allfamily directory contains the FASTA file of the 100 gene families generated with ALF, with only the species selected in the partition. The Aln directory contains the MSA for each gene family as generated with MAFFT with the selected species set The FTree directory contains the gene tree for each family as generated with FastTree with the selected species set The __Script__ directory containst the files used to generated the data from the ALF directory, as well as downstream analysis To reproduce the results start by runing __rewriteSeq.py__ , which is used for generating the Partitions. It takes as parameter the ALF directory, the directory in which you wish to generate the partitions, and the path to ALF's genomes FASTA files. If the partition file already exist, you can use the -r option to redo the random selection, otherwise it will generate file for the previous random selection. Example command : python rewriteSeq.py -i ../ALF\_output -o ../Partitions -g ../ALF\_output/DB Then, by runing __rewriteTree.py__ you will generated the reference trees used for the RF comparisons, as well as species tree used for each partitions. It takes as parameters the ALF directory , the Partitions directory and the species file of the partitions used to create the reference tree (smallest of all partitions) Example command : python rewriteTree.py -i ../ALF\_output/ -p ../Partitions/ -s ../Partitions/Part10/summary.txt Then, the script __launchFastTree.sh__ will, by partitions, generate a MSA using MAFFT and a phylogenetic tree using FastTree. It takes as parameter the Partitions directory and the number of the identifier of the partition for which you wish tu run it. Notes that the afforementionned software need to be installed before hand. Example command: bash launchFastTree.sh ../Partitions 10 Finally, the __LRFAnalysis.ipynb__ file is a Jupyer Notebook used to run downstream analysis of RF and LRF on the different Partitions, including figure generation. Path to the data directory can be set in the 4th block of the Notebook. <strong>Comparison of RF, LRF, and ELRF</strong> The code to compare is provided as a Jupyter notebook in the directory "Comparison with RF and ELRF". The input NOX4 family from Ensembl version 99 is provided. The output figures are provided as PDF but they can be regenerated by running the notebook.
DOI: 10.7298/b3bm-6r17
title: Data from: The Earthquake Arrest Zone
DOI: 10.6084/m9.figshare.13393097
title: mergemunicipaldata.dta

description: local public spending on education and performance of public school students
DOI: 10.15490/fairdomhub.1.datafile.3961.1
title: Exposure response on defensome genes in zebrafish early development
DOI: 10.15468/vv4ywv
title: New subgenera and species of Agraeciini (Orthoptera, Tettigoniidae, Conocephalinae) from South Asia found in historical insect collections

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ingrisch, Sigfrid (2020): New subgenera and species of Agraeciini (Orthoptera, Tettigoniidae, Conocephalinae) from South Asia found in historical insect collections. Evolutionary Systematics 4 (2): 119-132, DOI: http://dx.doi.org/10.3897/evolsyst.4.60525, URL: http://dx.doi.org/10.3897/evolsyst.4.60525
DOI: 10.15468/6sp4h3
title: A phylogenetic and taxonomic review of baviine jumping spiders (Araneae, Salticidae, Baviini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Maddison, Wayne P., Beattie, Imara, Marathe, Kiran, Ng, Paul Y. C., Kanesharatnam, Nilani, Benjamin, Suresh P., Kunte, Krushnamegh (2020): A phylogenetic and taxonomic review of baviine jumping spiders (Araneae, Salticidae, Baviini). ZooKeys 1004: 27-97, DOI: http://dx.doi.org/10.3897/zookeys.1004.57526, URL: http://dx.doi.org/10.3897/zookeys.1004.57526
DOI: 10.15468/bkqmgn
title: Five million years in the darkness: A new troglomorphic species of Cryptops Leach, 1814 (Chilopoda, Scolopendromorpha) from Movile Cave, Romania

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vahtera, Varpu, Stoev, Pavel, Akkari, Nesrine (2020): Five million years in the darkness: A new troglomorphic species of Cryptops Leach, 1814 (Chilopoda, Scolopendromorpha) from Movile Cave, Romania. ZooKeys 1004: 1-26, DOI: http://dx.doi.org/10.3897/zookeys.1004.58537, URL: http://dx.doi.org/10.3897/zookeys.1004.58537
DOI: 10.15468/sm6v6q
title: A new species of Campoletis Foerster (Hymenoptera, Ichneumonidae) with a key to species known from China, Japan and South Korea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wei, Ya-Wei, Zhou, Yong-Bin, Zou, Qing-Chi, Sheng, Mao-Ling (2020): A new species of Campoletis Foerster (Hymenoptera, Ichneumonidae) with a key to species known from China, Japan and South Korea. ZooKeys 1004: 99-108, DOI: http://dx.doi.org/10.3897/zookeys.1004.57913, URL: http://dx.doi.org/10.3897/zookeys.1004.57913
DOI: 10.15468/2csrdj
title: The genus Nipponodrasterius Kishii (Coleoptera, Elateridae, Agrypninae), a junior synonym of the genus Gamepenthes Fleutiaux (Coleoptera, Elateridae, Elaterinae), with review of the Japanese Gamepenthes species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Arimoto, Koichi, Arimoto, Hisayuki (2020): The genus Nipponodrasterius Kishii (Coleoptera, Elateridae, Agrypninae), a junior synonym of the genus Gamepenthes Fleutiaux (Coleoptera, Elateridae, Elaterinae), with review of the Japanese Gamepenthes species. ZooKeys 1004: 109-127, DOI: http://dx.doi.org/10.3897/zookeys.1004.56201, URL: http://dx.doi.org/10.3897/zookeys.1004.56201
DOI: 10.18112/openneuro.ds003433.v1.0.0
title: newbi4fmri Localizer
DOI: 10.6084/m9.figshare.13393325
title: The Impact of Heartfulness Program on Loneliness in High School Students in the U.S.

description: The dataset provides data from a study that examines the impact of Heartfulness Program on loneliness in high school students in the US. This study includes the Heartfulness group (n=54) and the wait-listed control group (n=54). Pre and post surveys gain a measure of their Loneliness levels before and after the Heartfulness program for 28 days.
DOI: 10.6084/m9.figshare.7476164
title: Do it by Design- Heartfulness- 13 week elective 2017-18 with analysis.xlsx

description: This study examines the effectiveness of a Heartfulness-based program (HPS) customized for middle school students. Participants, which included the HPS group (n = 74) and control group (n = 34), completed two surveys which measured stress (PSS) and well-being (WEMWBS) at baseline and after the completion of the 13-week elective.<br>
DOI: 10.6084/m9.figshare.7722062.v1
title: Drugs, Active Pharmaceutical Ingredients and Diseases database, a resource for analysis on drugs-illness interaction

description: <pre>Quantitative and qualitative data on active-ingredient drug composition are essential information for characterizing near-field exposure. Equally as important is the characterization of the relationship between one or many active ingredients in terms of the diseases they are prescribed for. Such evaluations however require quantitative and well-classified information at different anatomical levels. Here we present two datasets which contain details of 12,827 drugs, 40,164 diseases, 6,231 active pharmaceutical ingredients and 4,093 side effects. </pre> <pre>These datasets will allow researchers, physicians and pharmacists to evaluate the active substances at an anatomical level, enabling them to infer the range of different active substances and possible side effects on patients with comorbidities. These datasets also contains information about clinical and pharmacological classification, which may be useful for clinical researchers and physicians.</pre>
DOI: 10.18112/openneuro.ds003432.v1.0.0
title: newbi4fmri Main Experiment
DOI: 10.6084/m9.figshare.13393214
title: Filtered cell barcodes

description: Filtered barcodes for the scRNA-seq CRISPRa screen readout (GSE135621)
DOI: 10.6084/m9.figshare.13393214.v1
title: Filtered cell barcodes

description: Filtered barcodes for the scRNA-seq CRISPRa screen readout (GSE135621)
DOI: 10.6084/m9.figshare.12940052
title: Supplementary data and scripts from Winbush and Singh (2020)

description: Contains supplementary data and relevant scripts for the manuscript:<br>Genomics of recombination rate variation in temperature-evolved <i>Drosophila melanogaster</i> populations.<br>
DOI: 10.15468/yzsg52
title: On the taxonomy of Afrotropical Coleophoridae (IV). New or little known species from South Africa (Lepidoptera, Coleophoridae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Baldizzone, Giorgio, Van Der Wolf, Hugo W. (2020): On the taxonomy of Afrotropical Coleophoridae (IV). New or little known species from South Africa (Lepidoptera, Coleophoridae). Zootaxa 4816 (2): 151-170, DOI: https://doi.org/10.11646/zootaxa.4816.2.1
DOI: 10.5281/zenodo.3888704
title: Ionospheric Vertical Correlation Lengths Derived From IRI-2016 Model Errors

description: Ionospheric vertical correlation lengths based on IRI-2016 model and Incoherent Scatter Radar (ISR) data. <strong>Important! The analysis was performed in log space. </strong> ISR used for this analysis: Jicamarca, Arecibo, Millstone Hill, Poker Flat ISR, and ResoluteBay North ISR. This metadata can be used for the construction of the covariance matrix for ionospheric data assimilation. Inside of the .nc file: lat=array of geomagnetic latitudes (degrees)<br> alt=arrays of altitudes (km)<br> vert_corr1=array of size (nalt, nlat), contains vertical correlation length above the reference point for different latitudes<br> vert_corr2=array of size (nalt, nlat), contains vertical correlation length below the reference point for different latitudes<br>
DOI: 10.5281/zenodo.4330088
title: Supplementary files for manuscript: Acacia organelle genome assembly

description: Supplementary files to accompany manuscript regarding genome assembly of organelles from <em>Acacia pycnantha. </em>
DOI: 10.21227/y3pr-dd20
title: A Short Note on the Datasets Used in “Ageing Analysis of Solar Farm Inverter Transformers”

description: The datasets consist of operational data and detailed information of three inverter transformers in a 3.275 MW PV plant in the outskirt of Brisbane, Australia. The data includes load current, top-oil temperature, moisture in top oil, ambient temperature, solar irradiance and individual current harmonics (up to 31st order). The time interval of the data is either 1 minute or 3 seconds (dependent on the data type). The data can be used to study the ageing of inverter transformers in this PV plant.
DOI: 10.5281/zenodo.4330565
title: DigitalHabsburgPlatform/example-data: DHP I administration data, incl. institutions

description: Re-release with institutions from MPR
DOI: 10.5281/zenodo.4330091
title: DigitalHabsburgPlatform/example-data: DHP I administration data, incl. institutions

description: Re-release with institutions from MPR
DOI: 10.25345/c53n4h
title: MassIVE MSV000086607 - wildling project - large intestine
title: wildling project at the University of Oklahoma - large intestine samples
DOI: 10.18112/openneuro.ds003434.v1.0.0
title: newbi4fmri Main Experiment
DOI: 10.21227/t3vm-wf50
title: Operational data and detailed information of solar farm inverter transformers

description: The datasets consist of operational data and detailed information of three inverter transformers in a 3.275 MW PV plant in the outskirt of Brisbane, Australia. The data includes load current, top-oil temperature, moisture in top oil, ambient temperature, solar irradiance and individual current harmonics (up to 31st order). The time interval of the data is either 1 minute or 3 seconds (dependent on the data type). The data can be used to study the ageing of inverter transformers in this PV plant.
DOI: 10.3886/e128941v1
title: Accounting for non-normal covariates in treatment effects from count regressions

description: The effects of a treatment or an intervention on a count outcome is often of interest in applied research. When controlling for additional covariates, a negative binomial regression model is usually applied to estimate conditional expectations of the count outcome. The difference in conditional expectations under treatment and under control is then defined as the (conditional) treatment effect. While traditionally aggregates of these conditional treatment effects (e.g., average treatment effects) are computed by averaging over the empirical distribution, a recently proposed moment-based approach allows for computing aggregate effects as a function of distribution parameters. The moment-based approach makes it possible to control for (latent) multivariate normally distributed covariates and provides more reliable inferences under certain conditions. <br><br>In this paper, we propose three different ways to account for non-normally distributed continuous covariates in this approach: (a) an alternative, known non-normal distribution, (b) a plausible factorization of the joint distribution, and (c) an approximation using finite Gaussian mixtures. A saturated model is used for categorical covariates, making a distributional assumption obsolete. <br><br>
DOI: 10.3886/e115162
title: Replication Data for: Gambling, Saving, and Lumpy Liquidity Needs

description: I present evidence that unmet liquidity needs for indivisible, “lumpy”, expenditures increase demand for betting as a second-best method of liquidity generation in the presence of financial constraints. With a sample of 1,708 sports bettors in Kampala, Uganda, I show that participants’ targeted payouts are linked to anticipated expenditures while winnings disproportionately increase lumpy expenditures. I show that a randomized savings treatment decreases demand for betting. And I use two lab-in-the-field experiments to show that unmet liquidity needs and saving ability are important mechanisms. These results cannot be explained by betting as a purely normal good.
description: Response Rates: Data collection for panel study participants was designed to have five in-person interviews. 95% of those who participated in the first two (and who are included in the analysis), were successfully reached for all five visits and 99.5% were reached for at least four.<br>
description: computer-assisted personal interview (CAPI); computer-assisted telephone interview (CATI); face-to-face interview; The project had three phases of data collection. The first two phases were sets of interviews with study participants creating nine week panels of reported betting, earning, and consumption. Each group was approximately 500 respondents. Data collection for the first group was conducted between October and December 2015. Data collection for the second group took place from April to June 2016. A final group of 751 participants were included with a single visit interview in July 2016.
description: The study targeted men, 18-40 years old, self-employed in small micro-enterprises orservices, with weekly incomes below 50 USD. Each phase of data collection began witha listing exercise in selected parishes around Kampala. Listing was intended to establishbroader betting incidence in this population and to identify suitable study participants whoconstituted a range of “typical” bettors, and not just those who were most extreme. Respondents were identified at their place of work and asked a short set of screening questions to determine whether they met the targeting criteria and to ask if they were interested in participating in the study. A total of 5,522 people were included in this listing. 60% of these respondents reported to bet regularly. From this group, randomly chosen participants were invited to participate in the full study.
DOI: 10.3886/e115162v1
title: Replication Data for: Gambling, Saving, and Lumpy Liquidity Needs

description: I present evidence that unmet liquidity needs for indivisible, “lumpy”, expenditures increase demand for betting as a second-best method of liquidity generation in the presence of financial constraints. With a sample of 1,708 sports bettors in Kampala, Uganda, I show that participants’ targeted payouts are linked to anticipated expenditures while winnings disproportionately increase lumpy expenditures. I show that a randomized savings treatment decreases demand for betting. And I use two lab-in-the-field experiments to show that unmet liquidity needs and saving ability are important mechanisms. These results cannot be explained by betting as a purely normal good.
description: Response Rates: Data collection for panel study participants was designed to have five in-person interviews. 95% of those who participated in the first two (and who are included in the analysis), were successfully reached for all five visits and 99.5% were reached for at least four.<br>
description: computer-assisted personal interview (CAPI); computer-assisted telephone interview (CATI); face-to-face interview; The project had three phases of data collection. The first two phases were sets of interviews with study participants creating nine week panels of reported betting, earning, and consumption. Each group was approximately 500 respondents. Data collection for the first group was conducted between October and December 2015. Data collection for the second group took place from April to June 2016. A final group of 751 participants were included with a single visit interview in July 2016.
description: The study targeted men, 18-40 years old, self-employed in small micro-enterprises orservices, with weekly incomes below 50 USD. Each phase of data collection began witha listing exercise in selected parishes around Kampala. Listing was intended to establishbroader betting incidence in this population and to identify suitable study participants whoconstituted a range of “typical” bettors, and not just those who were most extreme. Respondents were identified at their place of work and asked a short set of screening questions to determine whether they met the targeting criteria and to ask if they were interested in participating in the study. A total of 5,522 people were included in this listing. 60% of these respondents reported to bet regularly. From this group, randomly chosen participants were invited to participate in the full study.
DOI: 10.3886/e129001
title: Multi-Stage Model of Major Choice

description: These files provide information on the data used in “Gender and Racial Differences in Awareness and Consideration of Curricular Programs: Exploring a Multistage Model of Major Choice,” (Baker & Orona, AERA Open, 2020, abstract below). The data used in the paper are not able to be shared publicly, but the survey that the data come from and the cleaning and analysis files are included here.<br><br>One method for reducing gender and racial segregation in career fields is addressing sorting by major in college. However, previous research has not examined the full process of major sorting; few studies have explicitly explored the majors of which students are aware or the majors that students consider choosing. In this study, we use survey data from community college students to examine differences in the size and composition of awareness and consideration sets of groups of students. We find significant differences in the size of awareness sets and the composition of consideration sets in our sample. Applying the methodological advances from this study could help college administrators identify key opportunities, in timing or methodology, for supporting and guiding students’ decisions.
description: Response Rates: 95%
description: Community College students in California.
description: Sampled at the course level, using targeted + convenience sampling (classes taken by students who are transfer intending)
DOI: 10.3886/e129001v1
title: Multi-Stage Model of Major Choice

description: These files provide information on the data used in “Gender and Racial Differences in Awareness and Consideration of Curricular Programs: Exploring a Multistage Model of Major Choice,” (Baker & Orona, AERA Open, 2020, abstract below). The data used in the paper are not able to be shared publicly, but the survey that the data come from and the cleaning and analysis files are included here.<br><br>One method for reducing gender and racial segregation in career fields is addressing sorting by major in college. However, previous research has not examined the full process of major sorting; few studies have explicitly explored the majors of which students are aware or the majors that students consider choosing. In this study, we use survey data from community college students to examine differences in the size and composition of awareness and consideration sets of groups of students. We find significant differences in the size of awareness sets and the composition of consideration sets in our sample. Applying the methodological advances from this study could help college administrators identify key opportunities, in timing or methodology, for supporting and guiding students’ decisions.
description: Response Rates: 95%
description: Community College students in California.
description: Sampled at the course level, using targeted + convenience sampling (classes taken by students who are transfer intending)