cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/ws52h-dcn18
title: Eco 020509 62b

description: Escherichia coli, 09feb08c__12_2_1_020509_62_w1_035, btub filaments,
description: <strong>Tilt Series Date:</strong> 2009-02-08</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> 12.2.1 Martin</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-02-08-21/rawdata/</p>09feb08c__12_2_1_020509_62_w1_035.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-02-08-21/rawdata/09feb08c__12_2_1_020509_62_w1_035.mrc"
        > <i class="download icon"></i> Download </a></p>

        09feb08c__12_2_1_020509_62_w1_035.rec,  Reconstruction (Pixel Size 1.9 nm), 498.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-02-08-21/3dimage_13544/09feb08c__12_2_1_020509_62_w1_035.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/pybxs-rxn64
title: Pfl 121509 MP26

description: Prosthecobacter fluviatilis, 09dec18a_MP26___Pfl_013,
description: <strong>Tilt Series Date:</strong> 2009-12-18</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter fluviatilis</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
  mpa2009-12-18-12_slicer9231.jpg: Prosthecobacter fluviatilis  .  nucleoid
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-12-18-12/rawdata/</p>09dec18a_MP26___Pfl_013.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-12-18-12/rawdata/09dec18a_MP26___Pfl_013.mrc"
        > <i class="download icon"></i> Download </a></p>

        09dec18a_MP26___Pfl_013_full.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-12-18-12/3dimage_14259/09dec18a_MP26___Pfl_013_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.ncsrxx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acorus calamus",
 "Country is Bosnia and Herzegovina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047636-250811113504898/datasets/export for details.
DOI: 10.22002/kv60r-3qz89
title: Hyphomonas chq session18 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-06-24</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 2°, constant angular increment, dosage: 75.0 eV/Å²,  defocus: -7.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media, chloroquine 1.0mg/ml, 4degree...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-24-35/rawdata/</p>09jun24a_bx217c_078.mrc,  Tilt Series (Pixel Size 0.632 nm), 520.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-24-35/rawdata/09jun24a_bx217c_078.mrc"
        > <i class="download icon"></i> Download </a></p>

        09jun24a_bx217c_078_full.rec,  Reconstruction (Pixel Size 1.264 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-24-35/3dimage_8064/09jun24a_bx217c_078_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.g48xkj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acorus calamus",
 "Country is Bulgaria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047637-250811113504898/datasets/export for details.
DOI: 10.22002/cbyry-8se42
title: Calubactor EB session22 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-08-07</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Zhuo/Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media, EB 0.02mg/ml overnight 4degree...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-08-07-15/rawdata/</p>09aug07a_b266c_023.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-08-07-15/rawdata/09aug07a_b266c_023.mrc"
        > <i class="download icon"></i> Download </a></p>

        09aug07a_b266c_023_full.rec,  Reconstruction (Pixel Size 1.548 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-08-07-15/3dimage_8420/09aug07a_b266c_023_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/3mwq8-we671
title: Eco 031910 MP49

description: Escherichia coli, 10mar24a_MP_49_023,
description: <strong>Tilt Series Date:</strong> 2010-03-24</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> 19.1 Martin</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-03-24-13/rawdata/</p>10mar24a_MP_49_023.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-03-24-13/rawdata/10mar24a_MP_49_023.mrc"
        > <i class="download icon"></i> Download </a></p>

        10mar24a_MP_49_023.rec,  Reconstruction (Pixel Size 1.9 nm), 327.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-03-24-13/3dimage_14683/10mar24a_MP_49_023.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.c7ebd4
title: Occurrence Download

description: A dataset containing 3055 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acorus calamus",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3055 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047635-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/9gy8c-vjj32
title: CB15N wild type

description: Raw data files of CB15N wild type
description: <strong>Tilt Series Date:</strong> 2009-08-14</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach, IMOD</p>
<strong>Collaborators and Roles:</strong> Data collected by ZL</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Exponential phase</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-14-23/rawdata/</p>09aug14a_WTCC_040.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-14-23/rawdata/09aug14a_WTCC_040.mrc"
        > <i class="download icon"></i> Download </a></p>

        09aug14a_WTCC_040_part.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-14-23/3dimage_10264/09aug14a_WTCC_040_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/x4wqk-8hv79
title: MT310_xyl(+)_metal(-)

description: Raw data files of MT310_xyl(+)_metal(-)
description: <strong>Tilt Series Date:</strong> 2009-06-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach</p>
<strong>Collaborators and Roles:</strong> The MT310 strain was constructed by Martin Thanbichler; cell cultured and treated by Zhuo Li; data collected and processed by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> MT310 cells were induced with xylose for 20 hours. No metal salt was added. </p>
<strong>Sample Preparation:</strong> 10 nm gold. </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-21-4/rawdata/</p>09jun21a_Ctlnomet_008.mrc,  Tilt Series (Pixel Size 0.95 nm), 738.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-21-4/rawdata/09jun21a_Ctlnomet_008.mrc"
        > <i class="download icon"></i> Download </a></p>

        09jun21a_Ctlnomet_008_full.rec,  Reconstruction (Pixel Size 1.9 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-21-4/3dimage_4864/09jun21a_Ctlnomet_008_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/0xj26-tss54
title: Hyphomonas session9 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-03-07</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 2°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-07-3/rawdata/</p>09mar07a_36c_003.mrc,  Tilt Series (Pixel Size 0.632 nm), 553.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-07-3/rawdata/09mar07a_36c_003.mrc"
        > <i class="download icon"></i> Download </a></p>

        09mar07a_36c_003_full.rec,  Reconstruction (Pixel Size 1.264 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-07-3/3dimage_6875/09mar07a_36c_003_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/d7811-vwq62
title: Hyphomonas session15 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-06-05</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 2°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media, chloroquine 0.1mg/ml...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-05-46/rawdata/</p>09jun05a_bx467b_079.mrc,  Tilt Series (Pixel Size 0.774 nm), 536.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-05-46/rawdata/09jun05a_bx467b_079.mrc"
        > <i class="download icon"></i> Download </a></p>

        09jun05a_bx467b_079_part.rec,  Reconstruction (Pixel Size 1.548 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-05-46/3dimage_7798/09jun05a_bx467b_079_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16887450
title: Replication materials for "Quantifying the contributions of climate change and adaptation to mortality from unprecedented extreme heat events"

description: This repository provides code and data for "Quantifying the contributions of climate change and adaptation to mortality from unprecedented extreme heat events," currently in review. 

## Organization

The repository is organized into Scripts/, Figures/, and Data/ folders.

- Data: This folder includes intermediate and processed summary data that enable replication of most the figures and numbers cited in the text. The raw mortality data and E-OBS/ERA5 observations are quite large so they are not provided here but are publicly accessible. 

- Scripts: Code required to reproduce the findings of our work is included in this folder. Scripts are written in Python/Jupyter and R. The "France_counterfactual_HW_analysis" subfolder within this folder contains the code necessary to reproduce the machine learning training and predictions, adapted from Trok et al. (2024), https://www.science.org/doi/10.1126/sciadv.adl3242. There is a separate README within this folder which contains more specific details for reproducing this component of the analysis should you wish to do so. 

- Figures: This is where figures will be saved if you run the scripts.

## Data

Much of the intermediate data required to reproduce the final figures and numbers in the paper are provided in the various folders within the Data directory, including the overall panel dataset that includes departement-level mortality and temperature. However, much of the initial/raw data is too large to be hosted here. They are all publicly available at various locations:

- The E-OBS station-based observations are available here: https://surfobs.climate.copernicus.eu/dataaccess/access_eobs.php#datafiles

- Daily France mortality data is available here: https://www.insee.fr/fr/information/4769950

## Scripts

Each script performs one component of the analysis. Many of the initial scripts are wrapped into the France_Heat_Mortality.Rproj R project, so check the .Rprofile file for details on the required packages and file paths that are then loaded into each R script.

- France_Mortality_Regressions_R1.R performs all the heat-mortality regressions.

- France_Mortality_Predictions_R1.R performs the excess deaths calculations and the predictions of heat-related mortality from the 2003 heat wave.

- France_Mortality_Attribution_R1.R calculates counterfactual mortality at various levels of global mean temperature using the same heat-mortality relationships.

- Plot_Main_Figures_PNASR1.ipynb plots the main text figures and Plot_SM_Figures_PNASR1.ipynb plots the supplementary figures.

- Process_CNN_Deltas.R does some preprocessing on the machine learning predictions of the event just to make the final analysis more streamlined.

- Process_France_Mortality.R creates the initial panel dataset using the E-OBS data and France mortality observations. You won't be able to run this unless you download those data from the public archives.
DOI: 10.5281/zenodo.16953793
title: Replication materials for "Quantifying the contributions of climate change and adaptation to mortality from unprecedented extreme heat events"

description: This repository provides code and data for "Quantifying the contributions of climate change and adaptation to mortality from unprecedented extreme heat events," currently in review. 

## Organization

The repository is organized into Scripts/, Figures/, and Data/ folders.

- Data: This folder includes intermediate and processed summary data that enable replication of most the figures and numbers cited in the text. The raw mortality data and E-OBS/ERA5 observations are quite large so they are not provided here but are publicly accessible. 

- Scripts: Code required to reproduce the findings of our work is included in this folder. Scripts are written in Python/Jupyter and R. The "France_counterfactual_HW_analysis" subfolder within this folder contains the code necessary to reproduce the machine learning training and predictions, adapted from Trok et al. (2024), https://www.science.org/doi/10.1126/sciadv.adl3242. There is a separate README within this folder which contains more specific details for reproducing this component of the analysis should you wish to do so. 

- Figures: This is where figures will be saved if you run the scripts.

## Data

Much of the intermediate data required to reproduce the final figures and numbers in the paper are provided in the various folders within the Data directory, including the overall panel dataset that includes departement-level mortality and temperature. However, much of the initial/raw data is too large to be hosted here. They are all publicly available at various locations:

- The E-OBS station-based observations are available here: https://surfobs.climate.copernicus.eu/dataaccess/access_eobs.php#datafiles

- Daily France mortality data is available here: https://www.insee.fr/fr/information/4769950

## Scripts

Each script performs one component of the analysis. Many of the initial scripts are wrapped into the France_Heat_Mortality.Rproj R project, so check the .Rprofile file for details on the required packages and file paths that are then loaded into each R script.

- France_Mortality_Regressions_R1.R performs all the heat-mortality regressions.

- France_Mortality_Predictions_R1.R performs the excess deaths calculations and the predictions of heat-related mortality from the 2003 heat wave.

- France_Mortality_Attribution_R1.R calculates counterfactual mortality at various levels of global mean temperature using the same heat-mortality relationships.

- Plot_Main_Figures_PNASR1.ipynb plots the main text figures and Plot_SM_Figures_PNASR1.ipynb plots the supplementary figures.

- Process_CNN_Deltas.R does some preprocessing on the machine learning predictions of the event just to make the final analysis more streamlined.

- Process_France_Mortality.R creates the initial panel dataset using the E-OBS data and France mortality observations. You won't be able to run this unless you download those data from the public archives.
DOI: 10.17603/ds2-aw7z-2444
title: Research Experiences for Undergraduates (REU), NSF NHERI 2025: The Influence of Fines in Non-Plastic Silicas with Varying Water Contents

description: The aim of this research is to determine how variations in saturation and kaolin content within silicas can affect the void ratio of those silicas when sedimented at one g of force, and when consolidated at 80 g of force. During experimentation, silica samples with varying levels of fine kaolin particles (0% to 50%) will be exposed to water of various levels past the liquid limit of the samples. Data collected from this experimentation aids efforts to properly model tailings dam failures within the centrifuge at the Center for Geotechnical Modeling. These efforts are aimed at determining the precise causes of tailings dam failures, in order to better prevent them and update the common practices of engineers tasked with building and monitoring these dams. Those who seek to study tailings dam failures and how critical state mechanics relate to landsliding in undrained conditions may find valuable information from this paper.