cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4509113
title: GROND multi-color imaging of the GRB 161219B / SN 2016jca field.

description: This folder contains optical/near-infrared imaging of the field of GRB 161219B (Swift trigger 727541; D'Ai, GCN #20296) collected simultaneously with the Gamma-Ray Burst Optical/Near Infrared imager (GROND; Greiner et al. 2008, PASP 120, 405) mounted at the 2.2m MPG telescope on ESO's LaSilla observatory. These data include a time-series of SN 2016jca following GRB 161219B with nearly daily monitoring around peak, and are published in Cano et al. 2017 (arXiv:1704.05401).<br><br>The data were obtained in the grizJHK photometric bands. They were collected over a period of several nights starting from 2016-12-20, and consisted of several dithered images that are stacked to yield one fits image per epoch per band. <br><br>Data were automatically processed with the GROND pipeline, which uses standard procedures in python/pyraf/IRAF (see e.g., Kruehler et al. 2008, ApJ, 685, 376). The data are sky-subtracted and astrometrically calibrated against the Pan-STARRS or GAIA catalogs.<br><br>Critical information can be found in the fits header, the following keywords are particularly useful:<br><br>- EXPTIME = Exposure time of a single image<br>- NIMGS = Total number of images combined<br>- COMBINE = How the images were combined<br>- IMGEXP = Summed exposure of the image<br>- MJD-MID = Midtime of the image<br>- FILTER = Filter band of the observation<br>- AIRMASS = Average airmass of the observation<br>- FWHM = FWHM of the stellar PSF<br>- ASTRRMS1 = Uncertainty of the astrometric solution in RA<br>- ASTRRMS2 = Uncertainty of the astrometric solution in DEC<br>- MAGLIM = Limiting magnitude of the image<br>- INTERPSM = Individual images are resampled during shifting and adding, this number describes an empirical estimate by what factor the noise is smoothed (i.e., too low as estimated by the rms in the image). In particular in the NIR bands, standard procedure will underestimate the photometric error by this factor.<br>
DOI: 10.6084/m9.figshare.4509104
title: Demo dataset (VSD functional imaging) for the Vobi One software suite

description: See published paper:<br><br> Front. Neurosci., 24 January 2014 | https://doi.org/10.3389/fnins.2014.00002 Vobi One: a data processing software package for functional optical imaging Sylvain Takerkart<sup>1</sup><sup>*</sup>, Philippe Katz<sup>1,2</sup>, Flavien Garcia<sup>1</sup>, Sébastien Roux<sup>1</sup>, Alexandre Reynaud<sup>3</sup> and Frédéric Chavane<sup>1</sup> <sup>1</sup>Institut de Neurosciences de la Timone UMR 7289, CNRS - Aix Marseille Université, Marseille, France<sup>2</sup>LabISEN, Vision Department, Institut Supérieur de lElectronique et du Numérique, Brest, France<sup>3</sup>McGill Vision Research, Department of Ophtalmology, McGill University, Montréal, QC, Canada<br>
DOI: 10.6084/m9.figshare.4509113.v1
title: GROND multi-color imaging of the GRB 161219B / SN 2016jca field.

description: This folder contains optical/near-infrared imaging of the field of GRB 161219B (Swift trigger 727541; D'Ai, GCN #20296) collected simultaneously with the Gamma-Ray Burst Optical/Near Infrared imager (GROND; Greiner et al. 2008, PASP 120, 405) mounted at the 2.2m MPG telescope on ESO's LaSilla observatory. These data include a time-series of SN 2016jca following GRB 161219B with nearly daily monitoring around peak, and are published in Cano et al. 2017 (arXiv:1704.05401).<br><br>The data were obtained in the grizJHK photometric bands. They were collected over a period of several nights starting from 2016-12-20, and consisted of several dithered images that are stacked to yield one fits image per epoch per band. <br><br>Data were automatically processed with the GROND pipeline, which uses standard procedures in python/pyraf/IRAF (see e.g., Kruehler et al. 2008, ApJ, 685, 376). The data are sky-subtracted and astrometrically calibrated against the Pan-STARRS or GAIA catalogs.<br><br>Critical information can be found in the fits header, the following keywords are particularly useful:<br><br>- EXPTIME = Exposure time of a single image<br>- NIMGS = Total number of images combined<br>- COMBINE = How the images were combined<br>- IMGEXP = Summed exposure of the image<br>- MJD-MID = Midtime of the image<br>- FILTER = Filter band of the observation<br>- AIRMASS = Average airmass of the observation<br>- FWHM = FWHM of the stellar PSF<br>- ASTRRMS1 = Uncertainty of the astrometric solution in RA<br>- ASTRRMS2 = Uncertainty of the astrometric solution in DEC<br>- MAGLIM = Limiting magnitude of the image<br>- INTERPSM = Individual images are resampled during shifting and adding, this number describes an empirical estimate by what factor the noise is smoothed (i.e., too low as estimated by the rms in the image). In particular in the NIR bands, standard procedure will underestimate the photometric error by this factor.<br>
DOI: 10.6084/m9.figshare.4509104.v1
title: Demo dataset (VSD functional imaging) for the Vobi One software suite

description: See published paper:<br><br> Front. Neurosci., 24 January 2014 | https://doi.org/10.3389/fnins.2014.00002 Vobi One: a data processing software package for functional optical imaging Sylvain Takerkart<sup>1</sup><sup>*</sup>, Philippe Katz<sup>1,2</sup>, Flavien Garcia<sup>1</sup>, Sébastien Roux<sup>1</sup>, Alexandre Reynaud<sup>3</sup> and Frédéric Chavane<sup>1</sup> <sup>1</sup>Institut de Neurosciences de la Timone UMR 7289, CNRS - Aix Marseille Université, Marseille, France<sup>2</sup>LabISEN, Vision Department, Institut Supérieur de lElectronique et du Numérique, Brest, France<sup>3</sup>McGill Vision Research, Department of Ophtalmology, McGill University, Montréal, QC, Canada<br>
DOI: 10.6084/m9.figshare.4509092
title: Dataset for: Industry-academia collaboration in software engineering: an analysis of multiple research projects

description: Dataset for: Industry-academia collaboration in software engineering: an analysis of multiple research projects
DOI: 10.6084/m9.figshare.4509092.v1
title: Dataset for: Industry-academia collaboration in software engineering: an analysis of multiple research projects

description: Dataset for: Industry-academia collaboration in software engineering: an analysis of multiple research projects
DOI: 10.6084/m9.figshare.4509077
title: Bull bellows and bugles: a remarkable convergence of low and high-frequency vocalizations between male domestic cattle <i>Bos taurus</i> and the rutting calls of Siberian and North American wapiti

description: Whereas low-frequency bellows (below 200 Hz) have been investigated in detail in both male and female domestic cattle (<i>Bos taurus</i>), male high-frequency bugle calls (over 800 Hz) have not been described so far in any large bovid species. In this study, high-frequency bugles and low-frequency bellows were recorded from three crossbred free-ranging domestic cattle bulls and analysed spectrographically. The maximum fundamental frequency of bellows was 113.6 Hz, whereas the maximum fundamental frequency of bugles was 958.4 Hz, ranging from 801 to 1125 Hz in different males. These amazingly high fundamental frequencies of bull bugles are comparable with those reported for Siberian wapiti <i>Cervus elaphus sibiricus</i>, but lower than reported values for some subspecies of North American wapiti <i>Cervus canadensis</i>. The similarity with both Siberian and North American wapiti was also observed in the production of bull biphonic bugles with two fundamental frequencies: the low and the high one. We suggest that bugles of domestic cattle bulls provide an excellent model for comparative research with cervid bugles concerning the mechanism of vocal production and the underlying anatomical and behavioural adaptations.
DOI: 10.6084/m9.figshare.4509068
title: Ridge Regression and Generalized Maximum Entropy: An improved version of the Ridge–GME parameter estimator

description: In this article, the Ridge–GME parameter estimator, which combines Ridge Regression and Generalized Maximum Entropy, is improved in order to eliminate the subjectivity in the analysis of the ridge trace. A serious concern with the visual inspection of the ridge trace to define the supports for the parameters in the Ridge–GME parameter estimator is the misinterpretation of some ridge traces, in particular where some of them are very close to the axes. A simulation study and two empirical applications are used to illustrate the performance of the improved estimator. A MATLAB code is provided as supplementary material.
DOI: 10.6084/m9.figshare.4509077.v1
title: Bull bellows and bugles: a remarkable convergence of low and high-frequency vocalizations between male domestic cattle <i>Bos taurus</i> and the rutting calls of Siberian and North American wapiti

description: Whereas low-frequency bellows (below 200 Hz) have been investigated in detail in both male and female domestic cattle (<i>Bos taurus</i>), male high-frequency bugle calls (over 800 Hz) have not been described so far in any large bovid species. In this study, high-frequency bugles and low-frequency bellows were recorded from three crossbred free-ranging domestic cattle bulls and analysed spectrographically. The maximum fundamental frequency of bellows was 113.6 Hz, whereas the maximum fundamental frequency of bugles was 958.4 Hz, ranging from 801 to 1125 Hz in different males. These amazingly high fundamental frequencies of bull bugles are comparable with those reported for Siberian wapiti <i>Cervus elaphus sibiricus</i>, but lower than reported values for some subspecies of North American wapiti <i>Cervus canadensis</i>. The similarity with both Siberian and North American wapiti was also observed in the production of bull biphonic bugles with two fundamental frequencies: the low and the high one. We suggest that bugles of domestic cattle bulls provide an excellent model for comparative research with cervid bugles concerning the mechanism of vocal production and the underlying anatomical and behavioural adaptations.
DOI: 10.6084/m9.figshare.4509065
title: Dynamometry - Intrinsic Foot Muscles

description: Hand-held dynamometry for the evaluation of intrinsic foot muscle strength
DOI: 10.5281/zenodo.4012335
title: Ontolex-lemon and TIAD versions of Apertium Spanish-Romanian dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: (c) 2006--2008, Universitat d'Alacant (Transducens group) (c) 2008-- , Prompsit Language Engineering
DOI: 10.6084/m9.figshare.4509065.v1
title: Dynamometry - Intrinsic Foot Muscles

description: Hand-held dynamometry for the evaluation of intrinsic foot muscle strength
DOI: 10.5281/zenodo.4012334
title: Ontolex-lemon and TIAD versions of Apertium Spanish-Romanian dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: (c) 2006--2008, Universitat d'Alacant (Transducens group) (c) 2008-- , Prompsit Language Engineering
DOI: 10.6084/m9.figshare.4509035
title: Hematology journals do not sufficiently adhere to reporting guidelines: a systematic review.

description: Background: Reporting guidelines and trial/review registration policies have been instituted in order to minimize bias and improve research practices. Objective: The objective of this study was to investigate the policies of Hematology journals concerning reporting guideline adoption and trial/review registration. Methods: We performed a web-based data abstraction from the Instructions for Authors of 67 Hematology journals catalogued in the Expanded Science Citation Index of the 2014 Journal Citation Reports to identify whether each journal required, recommended, or made no mention of the following reporting guidelines: EQUATOR, ICMJE, CONSORT, MOOSE, QUOROM, PRISMA, STARD, STROBE, ARRIVE, and CARE. We also extracted whether journals required or recommended trial or systematic review registration. We emailed editors three times to determine which types of studies their journal accepts. Results: Forty-eight percent (32/67) of hematology journals do not adhere to any reporting guidelines. For responding journals, the QUOROM statement, MOOSE, CARE, and PROSPERO were the least often mentioned, whereas the ICMJE guidelines, CONSORT statement, and general trial registration were most often mentioned. Discussion: Reporting guidelines are infrequently required or recommended by hematology journals. Furthermore, few require clinical trial or systematic review database registration. A higher rate of adherence to reporting guidelines can prevent bias from entering the literature. Participation from all stakeholders, including authors and journal editors, to improve reporting guideline and policy practices is required.
DOI: 10.6084/m9.figshare.4509032
title: plosone_AFT.csv

description: MBD patients
DOI: 10.6084/m9.figshare.4509035.v1
title: Hematology journals do not sufficiently adhere to reporting guidelines: a systematic review.

description: Background: Reporting guidelines and trial/review registration policies have been instituted in order to minimize bias and improve research practices. Objective: The objective of this study was to investigate the policies of Hematology journals concerning reporting guideline adoption and trial/review registration. Methods: We performed a web-based data abstraction from the Instructions for Authors of 67 Hematology journals catalogued in the Expanded Science Citation Index of the 2014 Journal Citation Reports to identify whether each journal required, recommended, or made no mention of the following reporting guidelines: EQUATOR, ICMJE, CONSORT, MOOSE, QUOROM, PRISMA, STARD, STROBE, ARRIVE, and CARE. We also extracted whether journals required or recommended trial or systematic review registration. We emailed editors three times to determine which types of studies their journal accepts. Results: Forty-eight percent (32/67) of hematology journals do not adhere to any reporting guidelines. For responding journals, the QUOROM statement, MOOSE, CARE, and PROSPERO were the least often mentioned, whereas the ICMJE guidelines, CONSORT statement, and general trial registration were most often mentioned. Discussion: Reporting guidelines are infrequently required or recommended by hematology journals. Furthermore, few require clinical trial or systematic review database registration. A higher rate of adherence to reporting guidelines can prevent bias from entering the literature. Participation from all stakeholders, including authors and journal editors, to improve reporting guideline and policy practices is required.
DOI: 10.6084/m9.figshare.4508999
title: Intense light-elicited up-regulation of miR-21 facilitates glycolysis and cardioprotection in a Per2-dependent mechanism

description: A wide search for ischemic preconditioning (IP) mechanisms of cardioprotection identified the light elicited circadian rhythm protein Period 2 (Per2) to be cardioprotective. Studies on cardiac metabolism found a key role for light elicited Per2 in mediating metabolic dependence on carbohydrate metabolism. To profile Per2 mediated pathways following IP of the mouse heart, we performed a genome array and identified 352 abundantly expressed and well-characterized Per2 dependent micro RNAs. One prominent result of our <i>in silico </i>analysis for cardiac Per2 dependent micro RNAs revealed a selective role for miR-21 in the regulation of hypoxia and metabolic pathways. Based on this Per2 dependency, we subsequently found a diurnal expression pattern for miR-21 with higher miR-21 expression levels at Zeitgeber time (ZT) 15 compared to ZT3. Gain or loss of function studies for miR-21 using miRNA mimics or miRNA inhibitors and a Seahorse Bioanalyzer uncovered a critical role of miR-21 for cellular glycolysis, glycolytic capacity, and glycolytic reserve. Exposing mice to intense light, a strategy to induce Per2, led to a robust induction of cardiac miR-21 tissue level and decreased infarct sizes, which was abolished in <i>miR-21<sup>-/-</sup></i> mice. Similarly, first translational studies in humans using intense blue light exposure for 5 days in healthy volunteers resulted in increased plasma miR-21 levels which was associated with increased phosphofructokinase activity, the rate-limiting enzyme in glycolysis. Together, we identified miR-21 as cardioprotective downstream target of Per2 and suggest intense light therapy as a potential strategy to enhance miR-21 activity and subsequent carbohydrate metabolism in humans.
DOI: 10.6084/m9.figshare.4509032.v1
title: plosone_AFT.csv

description: MBD patients
DOI: 10.6084/m9.figshare.4508993
title: Differential Processing for Actively Ignored Pictures and Words

description: This data set contains accuracy and reaction time (RT) scores for participants during a primary identification task and secondary surprise recognition test. For more information regarding the data set, please contact the researcher.
DOI: 10.6084/m9.figshare.4508999.v1
title: Intense light-elicited up-regulation of miR-21 facilitates glycolysis and cardioprotection in a Per2-dependent mechanism

description: A wide search for ischemic preconditioning (IP) mechanisms of cardioprotection identified the light elicited circadian rhythm protein Period 2 (Per2) to be cardioprotective. Studies on cardiac metabolism found a key role for light elicited Per2 in mediating metabolic dependence on carbohydrate metabolism. To profile Per2 mediated pathways following IP of the mouse heart, we performed a genome array and identified 352 abundantly expressed and well-characterized Per2 dependent micro RNAs. One prominent result of our <i>in silico </i>analysis for cardiac Per2 dependent micro RNAs revealed a selective role for miR-21 in the regulation of hypoxia and metabolic pathways. Based on this Per2 dependency, we subsequently found a diurnal expression pattern for miR-21 with higher miR-21 expression levels at Zeitgeber time (ZT) 15 compared to ZT3. Gain or loss of function studies for miR-21 using miRNA mimics or miRNA inhibitors and a Seahorse Bioanalyzer uncovered a critical role of miR-21 for cellular glycolysis, glycolytic capacity, and glycolytic reserve. Exposing mice to intense light, a strategy to induce Per2, led to a robust induction of cardiac miR-21 tissue level and decreased infarct sizes, which was abolished in <i>miR-21<sup>-/-</sup></i> mice. Similarly, first translational studies in humans using intense blue light exposure for 5 days in healthy volunteers resulted in increased plasma miR-21 levels which was associated with increased phosphofructokinase activity, the rate-limiting enzyme in glycolysis. Together, we identified miR-21 as cardioprotective downstream target of Per2 and suggest intense light therapy as a potential strategy to enhance miR-21 activity and subsequent carbohydrate metabolism in humans.
DOI: 10.6084/m9.figshare.4508975
title: Molecular dynamics simulations of DNA

description: Starting from an ideal B-DNA duplex structure for nucleotide sequence 5'-CGATTTTTTGGC-3' (complementary strand 5'-GCTAAAAAACCG-3'), the structure was placed in a periodic dodecahedron box, followed by the addition of 6691 water molecules and 25 mM NaCl, resulting in a charge-neutral system of 20868 atoms. Preparation of the system consisted of energy minimization and 1ns position restraint molecular dynamics, with restraints on the DNA heavy atoms. We used the AMBER03 force field to describe the interactions between atoms, in combination with the TIP3P water model. After equilibration, 5 200ns molecular dynamics runs at constant temperature (300 K) and pressure (1 bar) were initiated with different random inital velocities taken from the Maxwell-Boltzmann distribution at 300 K. The simulations were performed with GROMACS v4.5.3.
DOI: 10.6084/m9.figshare.4508993.v1
title: Word_Pic_Processing_Data.sav

description: This data set contains accuracy and reaction time (RT) scores for participants during a primary identification task and secondary surprise recognition test. For more information regarding the data set, please contact the researcher.
DOI: 10.6084/m9.figshare.4509008.v2
title: Problem of Labeling in Figure 6A (MKM-AD 21.05.2016).pdf

description: Underlying data for figures
DOI: 10.6084/m9.figshare.4508945
title: Compilation of data from publications by the Société Malacologique de France

description: Interactions with authors of Bulletins and Annales, issued by SMF, to various other malacologists
DOI: 10.6084/m9.figshare.4508945.v1
title: Compilation of data from publications by the Société Malacologique de France

description: Interactions with authors of Bulletins and Annales, issued by SMF, to various other malacologists
DOI: 10.5281/zenodo.4012332
title: Ontolex-lemon and TIAD versions of Apertium Spanish-Portuguese dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: 2007-2013, Universitat d'Alacant (Grup Transducens) 2007-2013, Francis M. Tyers 2007-2013, Mikel L. Forcada 2007-2013, Sergio Ortiz 2007-2014, Gema Ramírez Sánchez 2007, Oscar Senra Gómez 2008-2011, Jim O'Regan 2008, Mireia Ginestí Rosell 2009, Pminervini 2010, Carlos Ramisch 2012-2014, Kevin Brubeck Unhammer 2012, Anthony J. Bentley 2013-2014, Miriam Antunes Gonçalves 2013, Filip Petkovski 2014, Alicia Nieva
DOI: 10.6084/m9.figshare.4509008.v3
title: underlying data

description: Underlying data for figures
DOI: 10.5281/zenodo.4012331
title: Ontolex-lemon and TIAD versions of Apertium Spanish-Portuguese dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: 2007-2013, Universitat d'Alacant (Grup Transducens) 2007-2013, Francis M. Tyers 2007-2013, Mikel L. Forcada 2007-2013, Sergio Ortiz 2007-2014, Gema Ramírez Sánchez 2007, Oscar Senra Gómez 2008-2011, Jim O'Regan 2008, Mireia Ginestí Rosell 2009, Pminervini 2010, Carlos Ramisch 2012-2014, Kevin Brubeck Unhammer 2012, Anthony J. Bentley 2013-2014, Miriam Antunes Gonçalves 2013, Filip Petkovski 2014, Alicia Nieva
DOI: 10.6084/m9.figshare.4508912
title: Figure 4G

description: blah
DOI: 10.6084/m9.figshare.4508912.v1
title: Figure 4G

description: blah
DOI: 10.6084/m9.figshare.4508861
title: Host resistance and tolerance of parasitic gut worms depend on resource availability

description: Host resistance and tolerance of parasitic gut worms (Apectana sp.) depend on resource availability in Cuban tree frogs. http://link.springer.com/article/10.1007/s00442-017-3822-7
DOI: 10.6084/m9.figshare.4508861.v1
title: Host resistance and tolerance of parasitic gut worms depend on resource availability

description: Host resistance and tolerance of parasitic gut worms (Apectana sp.) depend on resource availability in Cuban tree frogs
DOI: 10.6084/m9.figshare.4508861.v2
title: Host resistance and tolerance of parasitic gut worms depend on resource availability

description: Host resistance and tolerance of parasitic gut worms (Apectana sp.) depend on resource availability in Cuban tree frogs. http://link.springer.com/article/10.1007/s00442-017-3822-7
DOI: 10.6084/m9.figshare.4508822
title: Słownik online gramatyki języka japońskiego - Tame

description: Tame jest rzeczownikiem formalnym w języku japońskim, oznaczającym - zależnie od kontekstu - cel, powód, przyczynę, ale też korzyść. Słownik online gramatyki języka japońskiego.
DOI: 10.6084/m9.figshare.4508825
title: Słownik online gramatyki języka japońskiego - Wa

description: Wa pełni w języku japońskim funkcję postpozycji (partykuły) tematu wypowiedzi. Słownik online gramatyki języka japońskiego.
DOI: 10.6084/m9.figshare.4508822.v1
title: Słownik online gramatyki języka japońskiego - Tame

description: Tame jest rzeczownikiem formalnym w języku japońskim, oznaczającym - zależnie od kontekstu - cel, powód, przyczynę, ale też korzyść. Słownik online gramatyki języka japońskiego.