cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bscht4
title: Occurrence Download

description: A dataset containing 72189 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asplenium viride Huds."
 ]
}

 The dataset includes 72189 records from 633 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033113-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3612848_d4
title: Additional file 2: Table S1. of MicroRNA-derived network analysis of differentially methylated genes in schizophrenia, implicating GABA receptor B1 [GABBR1] and protein kinase B [AKT1]

description: All experimentally verified targets that were found differentially methylated in schizophrenics by Wockner et al. [6] (in promoters overlapping a CpG island) of all microRNAs associated with schizophrenia. The number of promoter and cis elements associated with each gene as found by Thurman et al. [40] are shown in columns 2 and 3, respectively. (XLSB 247 kb)
DOI: 10.6084/m9.figshare.c.3612839_d9
title: Additional file 1: of Validity assessment of the symptom checklist SCL-90-R and shortened versions for the general population in Ukraine

description: Confirmatory factor analysis of the SCL-90-R in the Ukrainian general population: factor loadings. Results of confirmatory factor analysis. Factor loadings for nine dimensions of the SCL-90-R in 1997, 1999 and 2014 studies that are representative of the Ukrainian population. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3612905_d1
title: MOESM1 of Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples

description: Additional file 1: Table S1. Taxonomic listing of all bacterial genera and species detected as contaminants of DNA extraction and processing kits in the present study and previously reported.
DOI: 10.6084/m9.figshare.c.3612893_d3
title: Additional file 3: Table S7. of 
                     Panx3 links body mass index and tumorigenesis in a genetically heterogeneous mouse model of carcinogen-induced cancer

description: Gene expression phenotypes and sample IDs. This Excel file (.xlsx) contains phenotype information for the cohort of mice used for expression analysis. The samples are labeled both by mouse ID as well as by.CEL name, corresponding to the.CEL files available from the GEO site under access number GSE52650. (XLSX 90 kb)
DOI: 10.6084/m9.figshare.c.3612950_d3
title: MOESM4 of Does the social equitability of community and incentive based conservation interventions in non-OECD countries, affect human well-being? A systematic review protocol

description: Additional file 4. Code Index. Index of Codes to be used for full-text review.
DOI: 10.6084/m9.figshare.c.3612950_d5
title: MOESM5 of Does the social equitability of community and incentive based conservation interventions in non-OECD countries, affect human well-being? A systematic review protocol

description: Additional file 5. Code Lists. List of Codes to be used for full-text review.
DOI: 10.6084/m9.figshare.c.3612959_d2
title: Additional file 5: of Changes in the composition of the RNA virome mark evolutionary transitions in green plants

description: Maximum-likelihood tree (Newick format) of RdRPs from viruses of the picorna-like tribe. (TXT 5 kb)
DOI: 10.6084/m9.figshare.c.3612992_d2
title: Additional file 6: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

description: Summary of homozygous and heterozygous SNPs identified in 35 chickpea genotypes. (XLSX 11Â kb)
DOI: 10.15468/dl.kjtgah
title: Occurrence Download

description: A dataset containing 10629 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((16.00454 36.20642,17.61554 37.28042,18.80887 38.53342,18.86854 40.38309,17.01887 41.63609,15.34821 42.65042,14.15487 43.48576,13.14054 45.33542,10.87321 46.70776,9.26221 49.39276,7.53187 51.71976,5.26454 51.42142,4.19054 50.76509,1.68454 49.75076,0.49121 47.78176,-2.37279 46.82709,-7.02679 46.76742,-12.03879 43.84376,-9.05546 35.84842,16.00454 36.20642))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Parnassius mnemosyne (Linnaeus, 1758)"
 ]
}

 The dataset includes 10629 records from 290 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033116-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3612989_d3
title: Additional file 3: of PFA toolbox: a MATLAB tool for Metabolic Flux Analysis

description: Stoichiometric matrix and experimental data for Pichia pastoris. A Microsoft Excel spreadsheet file with i) the list of reactions and metabolites, ii) the stoichiometric matrix of P. pastoris and iii) the experimental datasets taken from the literature. This includes measurements of biomass, substrates uptakes (glycerol, glucose, and methanol), Oxygen Uptake Rate (OUR), CO2 production (CPR), and formation of byproducts (ethanol, citrate, and pyruvate). (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3612992_d3
title: Additional file 18: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

description: Classification of all SNPs using SNPEff program. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3612989_d4
title: Additional file 1: of PFA toolbox: a MATLAB tool for Metabolic Flux Analysis

description: Code for the examples A.rar file with the MATLAB files code to perform the examples described below with Example of flux estimation under data scarcity (a), P. pastoris (b) and E. coli (c). (RAR 5 kb)
DOI: 10.6084/m9.figshare.c.3613058_d4
title: Additional file 4: of SWIFT-Review: a text-mining workbench for systematic review

description: Tox21 chemical names and synonyms. (XLSX 3996 kb)
DOI: 10.6084/m9.figshare.c.3613067_d1
title: Additional file 1: of Genetic conflict between sexual signalling and juvenile survival in the three-spined stickleback

description: Individual-based traits and growth tank-based traits. (XLS 53 kb)
DOI: 10.6084/m9.figshare.c.3612992_d22
title: Additional file 13: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

description: Summary of line specific variations. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3612992_d23
title: Additional file 7: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

description: Summary of Indel lengths and their respective counts across the genome. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3613058_d5
title: Additional file 2: of SWIFT-Review: a text-mining workbench for systematic review

description: CAMARADES dataset. (XLSX 17704 kb)
DOI: 10.6084/m9.figshare.c.3613058_d7
title: Additional file 6: of SWIFT-Review: a text-mining workbench for systematic review

description: UNEP EDCs. (XLSX 1432 kb)
DOI: 10.6084/m9.figshare.c.3613076_d1
title: Additional file 6: of Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges

description: Pathotype-specific significantly enriched or depleted ( P &lt;0.05) COG categories for missing genes, SNP-containing genes or genes within zones of recombination. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3613076_d2
title: Additional file 9: of Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges

description: Analysis of pathotype-specific protein lengths. The mean lengths, standard deviation and coefficient of variation of the orthologous proteins present in each pathotype are shown for cases where there is a difference in the mean length between the pathotypes and a small (
DOI: 10.6084/m9.figshare.c.3613079_d1
title: Additional file 1: Figure S1. of Marker genes that are less conserved in their sequences are useful for predicting genome-wide similarity levels between closely related prokaryotic strains

description: The number of genomes in which each marker gene is identified. Out of the 79 potential marker genes, 73 are present in at least 90 % of the genomes. Figure S2. Spearman’s correlation between each marker gene and the average AAI for all complete genomes. Genes are ordered in the same way as in Fig. 3. Figure S3. Trees generated based on AAI and on percent identities of each marker gene (including 16s rRNA), for the Escherichia/Shigella clade. Figure S4. Trees generated based on AAI and on percent identities of each marker gene (including 16s rRNA), for the Streptococcus clade. Figure S5. Trees generated based on AAI and on percent identities of each marker gene (including 16s rRNA), for the Bacillus clade. Table S1. List of 79 potential marker genes surveyed, out of which 73 were found to be present in at least 90 % of the genomes. Table S2. Alternative names of 79 potential marker genes surveyed. Table S3. Split distances between UPGMA tree generated using AAI and that generated using the percent identities of each marker gene, shown in correspondence with the average percent identity ranks of the marker genes. Table S4. Designed primers for each of the 10 genes that were least conserved in their sequences in the Escherichia/Shigella lineage. (ZIP 3355 kb)
DOI: 10.6084/m9.figshare.c.3613076_d3
title: Additional file 5: of Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges

description: Genic and intergenic pathotype-specific SNPs. Information about all identified pathotype-specific SNPs in the dataset, including the SNP location, the codon and amino acid change, and functional gene information where available. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3613100_d4
title: Additional file 4: of Implementation of an extended ZINB model in the study of low levels of natural gastrointestinal nematode infections in adult sheep

description: Raw data used. (TXT 5 kb)
DOI: 10.15468/dl.c88uf7
title: Occurrence Download

description: A dataset containing 4232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alariaceae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4232 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033118-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3613181_d1
title: Additional file 2: of Fully immunized child: coverage, timing and sequencing of routine immunization in an urban poor settlement in Nairobi, Kenya

description: Median age of vaccination. Table S2a: Median age of vaccination (days) among non-FIC children aged 12–23 months. Table S2b: Median age of vaccination (days) among FIC children aged 12–23 months. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3613184_d1
title: Additional file 17: Table S16. of DNA methylation analysis of paediatric low-grade astrocytomas identifies a tumour-specific hypomethylation signature in pilocytic astrocytomas

description: The differentially methylated CpG sites within de-regulated genes from the comparison between infratentorial pilocytic astrocytomas and normal cerebellum controls. 1_ Features of 11, 671 probes that are significantly differentially methylated in infratentorial pilocytic astrocytomas compared to published foetal and adult normal cerebellum datasets (averaged beta values with a difference of δβ ≥ 0.3, Benjamini-Hochberg corrected p-value &lt;0.05 [Lambert et al, Acta Neuropathologica 126:291-301, 2013]). 2_ Normalized log2 transformed expression analysis identifies differentially expressed genes between infratentorial pilocytic astrocytomas (n = 4) compared to normal cerebellum (n = 2, foetal and adult cerebellum). Genes that show fold change &gt;2 are highlighted. 3_ List of genes that have differential methylation (δβ ≥ 0.3) and differential gene expression (fold change &gt;2). (XLSX 4414 kb)
DOI: 10.6084/m9.figshare.c.3613184_d2
title: Additional file 11: Table S10. of DNA methylation analysis of paediatric low-grade astrocytomas identifies a tumour-specific hypomethylation signature in pilocytic astrocytomas

description: Ingenuity Pathway Analysis (IPA) for genes associated with 315 differentially methylated sites in the test pilocytic and diffuse astrocytomas. 1_ The 185 genes that were directly associated with 217/315 CpG sites. Enhancers (grey) and CpG probes that are present within more than one gene (#) are highlighted. 2_ IPA analysis shows significant biological and disease categories which includes their functional annotations (p-value &lt;0.05), sorted by p-value. (XLSX 116 kb)
DOI: 10.6084/m9.figshare.c.3613181_d3
title: Additional file 4: Table S3. of Fully immunized child: coverage, timing and sequencing of routine immunization in an urban poor settlement in Nairobi, Kenya

description: Proportion of children aged 12â  23Â months given vaccines more than 4 (14 for MV) days before the recommended age. The file shows children are receiving their vaccines earlier than recommended ages. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3613184_d10
title: Additional file 2: Table S2. of DNA methylation analysis of paediatric low-grade astrocytomas identifies a tumour-specific hypomethylation signature in pilocytic astrocytomas

description: Peak-corrected Infinium 450K methylation beta values for the test tumour set. Beta values are the ratios between the unmethylated (0) and methylated (1) signal intensities for the individual probes (ordered by Illumina probe ID). Normal brain controls: Foetal cerebellum, Foetal brain, Foetal frontal lobe, adult brain, human neural stem cells. Supratentorial pilocytic astrocytomas: PA1-PA6. Infratentorial pilocytic astrocytomas: PA7-PA17. Diffuse astrocytomas: DA1-DA10. (XLSX 173351 kb)
DOI: 10.6084/m9.figshare.c.3613235_d1
title: Additional file 2: of A methodology for exploring biomarker â   phenotype associations: application to flow cytometry data and systemic sclerosis clinical manifestations

description: IRIS Data Set and R code. (ZIP 291 KB)
DOI: 10.15468/dl.rs3jgg
title: Occurrence Download

description: A dataset containing 427 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cavoliniidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 427 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033119-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkrj7q
title: Occurrence Download

description: A dataset containing 268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((13.67259 43.23811,16.0901 43.64766,15.52127 44.41557,14.8273 45.13798,14.31969 45.46852,14.05408 45.1734,13.82979 45.06125,13.65271 45.4154,13.88291 45.59838,13.72944 45.80496,13.13329 45.82267,12.54305 45.58067,12.10626 45.30325,12.30105 44.37066,12.71422 43.90437,13.54056 43.5148,13.67259 43.23811))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinna nobilis Linnaeus, 1758"
 ]
}

 The dataset includes 268 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033121-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gjee8k
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Symplocos racemosa Roxb."
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033120-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14440674
title: Data for "Astronomaly Protege: Discovery Through Human-Machine Collaboration" by Lochner & Rudnick (2024).

description: Repository to host a small website to show the unusual objects discovered by Astronomaly: Protege in the MGCLS data. Viewable at https://michellelochner.github.io/mgcls.protege/.

This repository also hosts some supplementary files from Lochner & Rudnick (2024). The catalogue of Protege's recommendations, including source coordinates and human score (where available), is provided in the catalogue folder, while the outputs from the hyperparameter optimisation experiments in the appendix can be found in the appendix folder. Images of the 6161 source cutouts can be found in the [images folder](images) and in the compressed files `all_images_compressed_part1.zip` and `all_images_compressed_part2.zip`, where the png names correspond to the Protege rank.
DOI: 10.15468/dl.2qghjx
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Trichosanthes dioica Roxb."
 ]
}

 The dataset includes 17 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033122-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6gxhtm
title: Occurrence Download

description: A dataset containing 247 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Woodfordia fruticosa (L.) Kurz"
 ]
}

 The dataset includes 247 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033123-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nrva9f
title: Occurrence Download

description: A dataset containing 345 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Limacinidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 345 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033124-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r3gcyx
title: Occurrence Download

description: A dataset containing 928 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxonomic revision of Dennettia, Uvariodendron and Uvariopsis"
 ]
}

 The dataset includes 928 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033125-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmjsx4
title: Occurrence Download

description: A dataset containing 1667138 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CSIC-Real Jardín Botánico-Anthos. Sistema de Información de las Plantas de España"
 ]
}

 The dataset includes 1667138 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033117-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktdscj
title: Occurrence Download

description: A dataset containing 280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Living Specimen)",
 "TaxonKey is Simulium damnosum Theobald, 1903"
 ]
}

 The dataset includes 280 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033126-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00007887.0
title: Available IPD datapackage for study 'A Multi-center, Open-label, Four-arm, Randomized Trial Evaluating the Safety and Tolerability of Brivaracetam Intravenous Infusion and Bolus, Administered in BID Regimen as an Adjunctive Antiepileptic Treatment in Subjects From 16 to 70 Years Suffering From Epilepsy'

description: This is a multicenter, open-label, 4-arm, randomized, parallel-group study to evaluate safety and tolerability of Brivaracetam Intravenous (BRV iv) as adjunctive treatment for adults with epilepsy according to an initiation or a conversion scheme, during repeated dosing (100 mg/administration twice daily for 4.5 days).
DOI: 10.15468/dl.xepqxz
title: Occurrence Download

description: A dataset containing 143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clionaidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 143 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033127-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3bdtk2
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cymbopogon martinii (Roxb.) J.F.Watson"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033128-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ethvxk
title: Occurrence Download

description: A dataset containing 1667138 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CSIC-Real Jardín Botánico-Anthos. Sistema de Información de las Plantas de España"
 ]
}

 The dataset includes 1667138 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033107-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bp7xnj
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thoosidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033129-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.