cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.k1t5r/1
title: Onymacris phylogenetic data

description: Zip file containing Nexus formatted data and results from Bayesian analysis of all genes.  Includes output (results.txt), tree and parameter files.
DOI: 10.5061/dryad.q58r0/1
title: Pseudouroctonus minimus complex, full mtDNA data set

description: Nexus file with aligned sequences for two mtDNA genes generated from 67 samples. See ReadMe file to match sample names with species and voucher specimens.
DOI: 10.5061/dryad.q58r0/2
title: Pseudouroctonus minimus complex, COI data set used in *BEAST analyses

description: Nexus file with aligned COI sequences used in *BEAST analyses. See ReadMe file to match sample names with species and voucher specimens.
DOI: 10.5061/dryad.q58r0/3
title: Pseudouroctonus minimus complex, 16S data set used in *BEAST analyses

description: Nexus file with aligned 16S sequences used in *BEAST analyses. See ReadMe file to match sample names with species and voucher specimens.
DOI: 10.5061/dryad.q58r0/4
title: Pseudouroctonus minimus complex, phased ITS2 data set used in *BEAST analyses

description: Nexus file with final alignment of phased ITS2 sequences used in *BEAST analyses. See ReadMe file to match sample names with species and voucher specimens.
DOI: 10.5061/dryad.q58r0/5
title: Pseudouroctonus minimus complex, phased 28S data set used in *BEAST analyses

description: Nexus file with final alignment of phased 28S sequences used in *BEAST analyses. See ReadMe file to match sample names with species and voucher specimens.
DOI: 10.5061/dryad.sc88q/10
title: ExamplesPCAScoresFile

description: Example of scores from the first two sPCA axes calculated in adegenet. This data serves as the response variable in RDA.
DOI: 10.5061/dryad.sc88q/11
title: SampleResistanceFile

description: Example of pair-wise resistances values calculated in ArcGIS. These files serve as the input for CDPOP and partial Mantel tests.
DOI: 10.5061/dryad.sc88q/9
title: ExampleRoussetsafile

description: Example of a matrix of Rousset's a between all individuals calculated in Spagedi. These serve as the response variable in both partial Mantel tests and dbRDA.
DOI: 10.5061/dryad.v5012/1
title: Mutation Accumulation Generation 100 Fitness Data

description: Productivity and survivorship to adulthood for MA lines following 100 consecutive generations of mutation accumulation and the ancestral controls.  Column 1 corresponds to the line identifier (MA line or ancestral control line).  Column 2 lists the replicate number for each line (where possible, we aimed for five replicates within each line).  Columns 3-10 list the worm productivity corresponding to Days 1-8 of the productivity assay.  Column 11 is the total productivity summed across Days 1-8.  Column 12 lists the number of surviving adults from a pool of L1 larvae initially isolated.  Column 13 is the final value for survivorship to adulthood and ranges from 0 to 1 (corresponding to 0 to 100% survivorship to adulthood).  Dashes in cells represent lack of data due to hermaphrodite mortality during the assay or inability to enter the replicate line into assay due to sterility or mortality in preceding generations.
DOI: 10.5061/dryad.v5012/2
title: Mutation Accumulation Generation 172 Fitness Data

description: Productivity and survivorship to adulthood for MA lines following 172 consecutive generations of mutation accumulation and the ancestral controls.  Column 1 corresponds to the line identifier (MA line or ancestral control line).  Column 2 lists the replicate number for each line (where possible, we aimed for five replicates within each line).  Columns 3-10 list the worm productivity corresponding to Days 1-8 of the productivity assay.  Column 11 is the total productivity summed across Days 1-8.  Column 12 lists the number of surviving adults from a pool of L1 larvae initially isolated.  Column 13 is the final value for survivorship to adulthood and ranges from 0 to 1 (corresponding to 0 to 100% survivorship to adulthood).  Dashes in cells represent lack of data due to hermaphrodite mortality during the assay or inability to enter the replicate line into assay due to sterility or mortality in preceding generations.
DOI: 10.5061/dryad.v5012/3
title: Mutation Accumulation Generation 300 Fitness Data

description: Productivity and survivorship to adulthood for MA lines following 300 consecutive generations of mutation accumulation and the ancestral controls.  Column 1 corresponds to the line identifier (MA line or ancestral control line).  Column 2 lists the replicate number for each line (where possible, we aimed for five replicates within each line).  Columns 3-10 list the worm productivity corresponding to Days 1-8 of the productivity assay.  Column 11 is the total productivity summed across Days 1-8.  Column 12 lists the number of surviving adults from a pool of L1 larvae initially isolated.  Column 13 is the final value for survivorship to adulthood and ranges from 0 to 1 (corresponding to 0 to 100% survivorship to adulthood).  Dashes in cells represent lack of data due to hermaphrodite mortality during the assay or inability to enter the replicate line into assay due to sterility or mortality in preceding generations.
DOI: 10.5061/dryad.v5012/4
title: Mutation Accumulation Generation 409 Fitness Data

description: Productivity and survivorship to adulthood for MA lines following 409 consecutive generations of mutation accumulation and the ancestral controls.  Column 1 corresponds to the line identifier (MA line or ancestral control line).  Column 2 lists the replicate number for each line (where possible, we aimed for five replicates within each line).  Columns 3-10 list the worm productivity corresponding to Days 1-8 of the productivity assay.  Column 11 is the total productivity summed across Days 1-8.  Column 12 lists the number of surviving adults from a pool of L1 larvae initially isolated.  Column 13 is the final value for survivorship to adulthood and ranges from 0 to 1 (corresponding to 0 to 100% survivorship to adulthood).  Dashes in cells represent lack of data due to hermaphrodite mortality during the assay or inability to enter the replicate line into assay due to sterility or mortality in preceding generations.
DOI: 10.7925/drs1.ucdlib_31515
title: D'Olier Street Corner

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Stone structure, 6 levels above ground, constructed 1898.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31521
title: 2 Duke Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31524
title: 3 Duke Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31530
title: 5 Duke Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31536
title: 7 Duke Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31542
title: 9 Duke Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 3 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 2395
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31548
title: 11 Duke Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31554
title: 13 Duke Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 5 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31560
title: 15 Duke Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.1sj6k/1
title: Data for ART outcome and life satisfaction
DOI: 10.5061/dryad.4158c/1
title: Carex chalciolepis distribution points

description: This file contains the latitude and longitude for populations from throughout this species' range. The data are gathered from verified voucher specimens at the Rocky Mountain Herbarium and personal field work. This information was used for Maxent distribution modeling.
DOI: 10.5061/dryad.4158c/2
title: Carex nova distribution points

description: This file contains the latitude and longitude for populations from throughout this species' range. The data are gathered from verified voucher specimens at the Rocky Mountain Herbarium and personal field work. This information was used for Maxent distribution modeling.
DOI: 10.5061/dryad.4158c/3
title: QC script for cleaning raw Illumina data

description: This script was used to filter low quality reads from the raw Illumina data.
DOI: 10.5061/dryad.4158c/4
title: QC script for removing adaptors

description: This script was used for removing portions of the Illumina reads that were not needed.
DOI: 10.5061/dryad.4158c/5
title: chal_structure

description: This file contains the data for Carex chalciolepis that was used for Structure and PCA analyses.
DOI: 10.5061/dryad.4158c/6
title: nova_structure

description: This file contains the data for Carex nova that was used for Structure and PCA analyses.
DOI: 10.5061/dryad.44kh3/1
title: Microsatellite data - dogtooth

description: Excel file containing microsatellite data. Missing data are coded with -9.
DOI: 10.5061/dryad.44kh3/2
title: mtDNA data file

description: This is an is an ARLEQUIN input file containing mtDNA data for each population
DOI: 10.5061/dryad.465t5/1
title: HahnOrrock_JAE_Data

description: The file contains data used in the manuscript.  All data were collected by the authors in the field, except for fire records, which were obtained from the US-Forest Service.  Please refer to the manuscript and metadata for additional details.
DOI: 10.5061/dryad.4f0d1/1
title: Genotype data for Medley et al. 2014

description: genotypes.txt includes individual genotypes for each of 9 loci and 26 locations. In final analyses, one locus (Ap2) was removed due to null alleles, and four sites were removed because of non-independence to result in 22 sites.
DOI: 10.5061/dryad.4f0d1/2
title: Medley_etalMOLECOLdataMRDM

description: Site-level data, including genetic and landscape distances for Medley et al. 2014.
DOI: 10.5061/dryad.4f0d1/3
title: ScriptForDryadAUG2014

description: Script for running MRDM analyses for Medley et al. 2014.
DOI: 10.5061/dryad.4rp68/10
title: Proteins_seqs_all59species_input

description: Merged protein fasta file of all predicted proteins used in the analyses.
DOI: 10.5061/dryad.58060/5
title: Zebra finch pedigree

description: Zebra finch pedigree file used for analyses in ASReml (when saved as a '.ped' file).
DOI: 10.5061/dryad.58060/6
title: Zebra finch analyses

description: ASReml code to run the analyses of zebra finch beak redness described in the main article (when saved as a '.as' file)
DOI: 10.5061/dryad.5nt3g/2
title: Bufo_genotypes

description: Genotypes of parents and offspring for backcross used to infer sex linkage. Each file contains 6 descriptive columns plus 2 per marker, and one row per individual. Missing data value: empty cell.species: Species	cross: Collective identifier for 2 parents and their offspringindiv: Unique identifier for an individualstage: Adult, juvenile, or tadpolesex: Sex, observed or inferred from microsatellitessexed_by: Sex established by phenotype for adults, microsatellites for tadpoles, dissection for juveniles[marker name].1: One of two alleles for a given marker. For microsatellites, number corresponds to fragment length. For PCR-RFLP markers, 0 or 1 for absence/presence of restriction site. For sequence markers, balearicus or siculus haplotype.[marker name].2: Second of two alleles for the marker.
DOI: 10.5061/dryad.5nt3g/4
title: Hyla arborea transcriptome

description: Adult male H. arborea transcriptome, from brain, eye, heart, liver, muscle, and testis. 2.2 Gbp raw reads assembled with Trinity. When multiple splice variants assembled, only longest retained. Scaffolded with SSPACE.Scaffolds corresponding to genes or gene fragments used in this study:CHD1: scaffold12406ARL8A: scaffold8654CHERP: scaffold390CSDE1: scaffold1308DMRT1: scaffold6154DOCK8: scaffold31469FRYL: scaffold80KIAA0232: scaffold192LOC100494802: scaffold13879MAP1B: scaffold574MTUS1: scaffold1029NDRG2: scaffold355RAD23B: scaffold2417WDR1: scaffold1232
DOI: 10.5061/dryad.5r7p8/1
title: T_Implant_Final_Data

description: Experimental data for testosterone manipulations in juvenile male and female brown anoles. Sex is either male (M) or female (F). T treatment groups received a testosterone implant, and Blank treatment groups received a blank implant. Growth was calculated as the difference between initial and final values, divided by the elapsed time.VO2_mass is the mass taken at the time of measurement of oxygen consumption.
DOI: 10.5061/dryad.809s2/1
title: PONE data Pichot et al R2

description: data on dental status in New Caledonian 6-,9- and 12- yrs old children
DOI: 10.5061/dryad.83fs0/1
title: Multi_Locus_Genotypes_Nouhaudetal2014

description: Excel sheet containing the genotypes of 186 diploïd individuals (in rows) for 23 microsatellite loci (in columns) along with biotype information. Pea aphids were sampled in late August 2011 within a 30 km-diameter location in Eastern France. Please refer to the publication for marker information (outlier status).
DOI: 10.5061/dryad.84b4f/1
title: TEMPLETON ET AL. GOULDIAN DATA

description: Trials were carried out in captivity. Videos were scored as described in publication. Further details provided at the top of the excel file.
DOI: 10.5061/dryad.84t42/1
title: DoPathogensLimitTreeDistributions_ArchivedData
DOI: 10.5061/dryad.f7125/1
title: Genotypes_5_Lakes_3438_Markers

description: Genotypes at 3438 RAD markers (in Arlequin format), for 195 individual collected in 5 lakes. Each lake comprises a dwarf and a normal whitefish sample.
DOI: 10.5061/dryad.ff749/34
title: Most parsimonious trees for matrix “&gt;3.4_excluded”
DOI: 10.5061/dryad.ff749/35
title: RaxML input matrix “&gt;3.3_excluded”

description: RaxML input matrix “&gt;3.3_excluded”, Anodendron excluded, created from matrix “Allsites_noAno” by exclusion of sites with AIR rates &gt; 3.3, 125,487 base pairs retained, 943 base pairs excluded, Phylip format.
DOI: 10.5061/dryad.ff749/36
title: RaxML exclusion file, sites excluded from “Allsites_noAno” to create matrix “&gt;3.3_excluded”.
DOI: 10.5061/dryad.ff749/37
title: Maximum likelihood bootstrap tree for matrix “&gt;3.3_excluded” analyzed with linked branch lengths.
DOI: 10.5061/dryad.ff749/38
title: Maximum likelihood bootstrap tree for matrix “&gt;3.3_excluded” analyzed with unlinked branch lengths.
DOI: 10.5061/dryad.ff749/39
title: Most parsimonious trees for matrix “&gt;3.3_excluded”
DOI: 10.5061/dryad.ff749/40
title: RaxML input matrix “&gt;3.0_excluded”

description: RaxML input matrix “&gt;3.0_excluded”, Anodendron excluded, created from matrix Allsites_noAno (4b) by exclusion of sites with AIR rates &gt; 3.0, 123,995 base pairs retained, 2,435 base pairs excluded.
DOI: 10.5061/dryad.ff749/41
title: RaxML exclusion file, sites excluded from “Allsites_noAno” to create matrix “&gt;3.0_excluded”.
DOI: 10.5061/dryad.ff749/42
title: Maximum likelihood bootstrap tree for matrix “&gt;3.0_excluded” analyzed with linked branch lengths.
DOI: 10.5061/dryad.j697v/4
title: R script: R_Get_sample_Value

description: "R_Get_sample_Value.R" = This script was used to retrieve values of environmental data (present code: example for the turbidity data) for each sampling location.
DOI: 10.5061/dryad.j697v/5
title: Sample_location_micros

description: "Sample_location_Micros.xls" = file containing each sample information (sex, collection date, region of collection) and microsatellite data
DOI: 10.5061/dryad.j697v/6
title: Viricel_mtDNA_alignment

description: "Viricel_mtDNA_alignment.fasta" = alignment of all mitochondrial DNA haplotypes (including heteroplasmic sequences)
DOI: 10.5061/dryad.k2661/1
title: data
DOI: 10.5061/dryad.kj928/1
title: Food discovery & mean forager traffic on paired control & host paths

description: Raw data for paired trail-following experiments with the ant Cephalotes specularis in the laboratory. Data are given for 3 colonies (a, b, c). Ten paired path trials were conducted for each species (1-10 in "trial" column). Within each trial, a control path was paired with a path that had been previously used by host ant species Crematogaster ampla ("control" or "host" in the "path" column). Food discovery time ("discovery_time_s") is given in seconds, and mean forager traffic over the 25 minute trial ("mean_traffic_ants") is given in number of ants.
DOI: 10.5061/dryad.kj928/2
title: Food discovery & mean forager traffic on paired parasite & host paths

description: Raw data for paired trail-following experiments with the ant Cephalotes specularis in the laboratory. Data are given for 3 colonies (a, b, c). Ten paired path trials were conducted for each species (1-10 in "trial" column). Within each trial, a path previously used by the focal C. specularis colony was paired with a path that had been previously used by host ant species Crematogaster ampla ("parasite" or "host" in the "path" column). Food discovery time ("discovery_time_s") is given in seconds, and mean forager traffic over the 25 minute trial ("mean_traffic_ants") is given in number of ants.
DOI: 10.5061/dryad.m1831/1
title: DRYAD_Figure2_3_S3_S4_S5

description: Luminescence assay data for Figures 2, 3, S3, S4, and S5.
DOI: 10.5061/dryad.m1831/2
title: DRYAD_Fig4A

description: Behavioral data used in Figure 4A
DOI: 10.5061/dryad.m1831/3
title: DRYAD_Fig4B_S6

description: Behavioral data used in Figure 4B and S6
DOI: 10.5061/dryad.mq8nc/1
title: Maharjan_Evolution_data

description: Fitness and fixation of mutations in Escherichia coli populations evolving under glucose-limited chemostats - data were based on experimental observation.
DOI: 10.5061/dryad.n5b32/1
title: Noble_et_al_2012

description: Number of incorrect choices and latency (seconds) to enter a safe refuge for 60 Eulamprus quoyii lizards  across 10-11 days and 30-33 trials. Data was used to run a GLMM and collected under semi-natural conditions. NA values are incidences were lizards were already in the safe refuge. Datafile was created in microsoft 2011 (Mac OS X)
DOI: 10.5061/dryad.ph602/1
title: salmonids.RAG1.timetree

description: Bayesian chronogram (NEXUS tree format) of salmonid cladogenesis
DOI: 10.5061/dryad.q2hn2/1
title: Children's information preferences
DOI: 10.5061/dryad.q2hn2/2
title: Chimpanzees' information preferences
DOI: 10.5061/dryad.q2hn2/3
title: Combined data children chimpanzees information preferences_for R