cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.j5ptdx
title: Occurrence Download

description: A dataset containing 290241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cinclus cinclus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 290241 records from 338 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003717-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.39gg59
title: Occurrence Download

description: A dataset containing 377588 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Country is United States of America",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-124.9595 42.10513,-126.15268 41.86365,-126.36574 34.61938,-122.11861 30.55691,-117.63001 31.26713,-114.46241 32.20463,-113.86583 34.64779,-119.71806 39.00856,-119.80329 42.16195,-124.9595 42.10513))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aechmophorus occidentalis (Lawrence, 1858)",
 "Year 2000-2025"
 ]
}

 The dataset includes 377588 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003708-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bw2n2g
title: Occurrence Download

description: A dataset containing 4109 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is South Caribbean Diversity"
 ]
}

 The dataset includes 4109 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003725-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yxfdcn
title: Occurrence Download

description: A dataset containing 2192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Grus canadensis tabida J.L.Peters, 1925",
 "Year 1000-2025"
 ]
}

 The dataset includes 2192 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003728-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.805d3c9p
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (0 records)
DOI: 10.15468/dl.tkv37s
title: Occurrence Download

description: A dataset containing 10874 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fototrampeo para la biodiversidad en la Ecoreserva ASA La Guarupaya (Acacías, Meta) - Convenio Ecoreservas"
 ]
}

 The dataset includes 10874 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012080-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z78qdj
title: Occurrence Download

description: A dataset containing 50353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Dermochelys coriacea (Vandelli, 1761)"
 ]
}

 The dataset includes 50353 records from 409 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012069-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48612/msupe/a85v-43fb-5u44
title: Pilot dataset across three subsamples for the construct validity of the Academic Staff Emotional Intelligence Questionnaire (ASEIQ)

description: This dataset comprises responses from the development and validation study of the Academic Staff Emotional Intelligence Questionnaire (ASEIQ), a novel instrument designed to assess emotional intelligence among university lecturers in Nigeria. Data were collected from 3,122 academic staff across two Nigerian universities and include demographic variables and responses to 26 questionnaire items covering five dimensions of emotional intelligence: self-regulation, empathy, self-awareness, social awareness, and internal motivation. The sample was further split into three sub-samples: Subsample 1 (n = 262) for Exploratory Factor Analysis (EFA), Subsample 2 (n = 1,300) for Confirmatory Factor Analysis (CFA), and Subsample 3 (n = 1,560) for Bifactor modelling. The dataset supports exploratory factor analysis (EFA), confirmatory factor analysis (CFA), and bifactor modelling procedures used to validate the ASEIQ's psychometric properties, demonstrating robust reliability and construct validity. Researchers and educators can use this dataset to examine emotional intelligence constructs in higher education contexts, explore cultural adaptations of EI instruments, and inform policy and professional development for academic staff.
DOI: 10.6084/m9.figshare.29148452
title: Replication Kit for "In a Dataspace Far, Far Away: Incompatible ML-Enabled System Data Pairs"

description: Replication kit for [ASE 2025] In a Dataspace Far, Far Away: Measuring the 'Distance' of Incompatible ML-Enabled System Data Pairs
DOI: 10.15468/dl.78maf9
title: Occurrence Download

description: A dataset containing 50546284 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "DatasetKey is one of (A global database for the distributions of crop wild relatives, Svalbard Global Seed Vault Collection, INSDC Sequences, Natural History Museum (London) Collection Specimens, India Biodiversity Portal publication grade dataset, Global soil organisms, Royal Botanic Gardens, Kew - Herbarium Specimens, SeasonWatch - Tree Phenology Dataset (India), iNaturalist Research-grade Observations, EOD – eBird Observation Dataset)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 50546284 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008155-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/as1-tqg-6kl
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w32-caw-50a
title: Maianthemum F.H.Wigg.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.5ub5at
title: Occurrence Download

description: A dataset containing 1616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-87.51648 -61.72371,-58.86064 -61.72371,-58.86064 -22.62266,-87.51648 -22.62266,-87.51648 -61.72371))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Buteo ventralis",
 "Year 1970-2025"
 ]
}

 The dataset includes 1616 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023618-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/67e-vt4-0tq
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fmm-5tl-tbf
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/877-tz8-6y2
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r1x-xqt-bdj
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6qr-h2r-dw1
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/28v-q5v-af6
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6k9-c2h-rg8
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1d9-2yd-mps
title: Quercus L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bfd-la8-xtd
title: Maianthemum F.H.Wigg.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k9c-7x0-7hg
title: Orthiopteris Copel.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q0x-4b6-sbl
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8yr-xwc-96f
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7vz-y0s-dj1
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qj8-klz-8yh
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gdg-qf2-8qn
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l61-x98-7yn
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/klh-1wf-jbb
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l35-x9s-jyb
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a39-4tm-2f2
title: Voacanga Thouars

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j5t-8my-mbx
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wxa-be0-75g
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e2y-0mg-z6y
title: Maianthemum F.H.Wigg.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eam-zbm-mza
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e4m-61z-mev
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ef1-jxj-9ep
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6ja-3v5-b87
title: Muntiacus muntjak (Zimmermann, 1780)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/slf-2pb-sr1
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vfk-lh3-12x
title: Phyllolepidum Trinajstic

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/aew-ny3-tp0
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zk8-2ss-zlq
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e8k-2w6-wc1
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g9g-wkg-yy6
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w5z-rwl-eqq
title: Orthiopteris Copel.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tge-r4n-2py
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x44-x2t-sb1
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hmk-sm3-b9z
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hy3-zdy-4sb
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3bl-yjc-z9x
title: Orthiopteris Copel.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/71s-1d7-23e
title: Orthiopteris Copel.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.praaxf
title: Occurrence Download

description: A dataset containing 1022 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Desmognathus brimleyorum Stejneger, 1895)"
 ]
}

 The dataset includes 1022 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002151-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15102245
title: Genetic data of tetraploid sea anemone Aulactinia stella populations from North Pacific to Atlantic across the Arctic Ocean

description: This data file report the genotype of 180 Multi-Locus Genotypes (MLG) of partially clonal juvenile and adult sea anemones Aulactinia stella populations from North Pacific to Atlantic across the Arctic Ocean to study their reproductive modes and analyze their genetic structure.

Tab 1: List of the MLGs and their corresponding genotypes at ten microsatellites, number of found ramets, if found in juveniles and adults, list of sample ID found with this MLG (*-number indicates that this sample was a juvenile found in the adult *). 

Tab 2: GPS position of the sampled population in each studied site.

Tab 3: number of repeated MLGs found in each site. We also noted if found in only one age cohort (0) or both in juveniles and adults (1).

Data for the studyEkaterina Bocharova, Aleksandr Volkov, Solenn Stoeckel (March 2025) Increased clonality, decreased allele diversity and high genetic structure in tetraploid sea anemone Aulactinia stella populations from North Pacific to Atlantic across the Arctic Ocean. 

Corresponding author: bocharova.ekaterina@gmail.com
DOI: 10.15468/dl.94ww4v
title: Occurrence Download

description: A dataset containing 11804039 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fungi",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year 2000-2018",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DecimalLatitude is greater than or equal to 40",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000"
 ]
}

 The dataset includes 11804039 records from 1643 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002146-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11043386
title: Future Ocean Warming May Threaten Key Photosynthetic Microbes

description: Description

The datasets supporting the conclusions of this article, including field measurements of Prochlorococcus division rates, are available in this repository. 

The R code performs the following tasks:



Loads data from various sources, including lab experiments, dilution experiments, and in-situ measurements.

Calculates thermal norm predictions using different models (Eppley, Hinshelwood, Eppley-Norberg) to predict division rates based on temperature.

Generates figures to visualize the results, including latitudinal and temperature effects on division rates, model predictions compared with observed data, and changes in primary production under different emission scenarios.

Fits the Hinshelwood model to culture data and extracts best-fit parameters.

Performs bootstrapping to estimate uncertainty in the Hinshelwood model parameters.

Calculates confidence intervals for the bootstrapped parameters.


R Scripts



Ribalet_main.R: This script contains the main analysis code, including data loading, model fitting, figure generation, and bootstrapping.

Ribalet_fitting.R: This script defines functions for fitting different growth models to the data and estimating model parameters.


Requirements



R version 4.4.2 (2024-10-31)Platform: aarch64-apple-darwin20Running under: macOS Sequoia 15.1.1

Matrix products: defaultBLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.12.0

attached base packages:[1] parallel  stats     graphics  grDevices utils     datasets [7] methods   base     

other attached packages: [1] DEoptim_2.2-8   arrow_15.0.1    ggpubr_0.6.0    lubridate_1.9.3 [5] forcats_1.0.0   stringr_1.5.1   dplyr_1.1.4     purrr_1.0.2     [9] readr_2.1.5     tidyr_1.3.1     tibble_3.2.1    ggplot2_3.5.1  [13] tidyverse_2.0.0


Installation

Install the required R packages:



Code snippet





install.packages(c("tidyverse", "ggpubr", "arrow", "DEoptim"))





Usage

The scripts will generate figures and output files in the same directory.

Input Data

The code requires the following input data files:



culture.csv

dilution.csv

abundance.csv

mpm.csv

model_results.parquet

bootstrap_projections.csv

modeled-thermal-traits.tsv

sst.parquet

culture_syn.csv


Please ensure that these files are present in the same directory as the R script files.

Output Data

The code generates the following output files:



Figures: Figure1.png, Figure2.png, Figure3.png, FigureS1.png, FigureS2.png, FigureS3.png, FigureS4.png, FigureS5.png, FigureS6.png, FigureS9.png, FigureS11.png, FigureS12.png, FigureS13.png, FigureS14.png, FigureS15.png

CSV files: bootstrap_parameters.csv, cultures_thermal_reactions.csv


License

This code is licensed under the MIT License.
DOI: 10.5281/zenodo.11043387
title: Future Ocean Warming Threatens Key Marine Microbes

description: The datasets supporting the conclusions of this article, including at-sea measurements of Prochlorococcus division rates, are available in this repository. The scripts used to generate the figures are provided in the interests of open science. Model source code and workflow used to generate the projections of Prochlorococcus biomass are available on GitHub (https://github.com/seaflow-uw/mpm-workflow). If you have questions or find errors, please let me know (ribalet@uw.edu).
DOI: 10.5281/zenodo.13260394
title: Future Ocean Warming Threatens Key Marine Microbes

description: The datasets supporting the conclusions of this article, including field measurements of Prochlorococcus division rates, are available in this repository. The scripts used to generate the figures, along with statisitcal analysis (Ribalet_main.R) are provided in the interests of open science. Model source code and workflow used to estimate Prochlorococcus division rates are available on GitHub (https://github.com/seaflow-uw/mpm-workflow). If you have questions, please let me know (ribalet@uw.edu).
DOI: 10.5281/zenodo.13260675
title: Future Ocean Warming Threatens Key Photosynthetic Microbes

description: Description

The datasets supporting the conclusions of this article, including field measurements of Prochlorococcus division rates, are available in this repository. 

The R code performs the following tasks:



Loads data from various sources, including lab experiments, dilution experiments, and in-situ measurements.

Calculates thermal norm predictions using different models (Eppley, Hinshelwood, Eppley-Norberg) to predict division rates based on temperature.

Generates figures to visualize the results, including latitudinal and temperature effects on division rates, model predictions compared with observed data, and changes in primary production under different emission scenarios.

Fits the Hinshelwood model to culture data and extracts best-fit parameters.

Performs bootstrapping to estimate uncertainty in the Hinshelwood model parameters.

Calculates confidence intervals for the bootstrapped parameters.


R Scripts



Ribalet_main.R: This script contains the main analysis code, including data loading, model fitting, figure generation, and bootstrapping.

Ribalet_fitting.R: This script defines functions for fitting different growth models to the data and estimating model parameters.


Requirements



R version 4.4.2 (2024-10-31)Platform: aarch64-apple-darwin20Running under: macOS Sequoia 15.1.1

Matrix products: defaultBLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.12.0

attached base packages:[1] parallel  stats     graphics  grDevices utils     datasets [7] methods   base     

other attached packages: [1] DEoptim_2.2-8   arrow_15.0.1    ggpubr_0.6.0    lubridate_1.9.3 [5] forcats_1.0.0   stringr_1.5.1   dplyr_1.1.4     purrr_1.0.2     [9] readr_2.1.5     tidyr_1.3.1     tibble_3.2.1    ggplot2_3.5.1  [13] tidyverse_2.0.0


Installation

Install the required R packages:



Code snippet





install.packages(c("tidyverse", "ggpubr", "arrow", "DEoptim"))





Usage

The scripts will generate figures and output files in the same directory.

Input Data

The code requires the following input data files:



culture.csv

dilution.csv

abundance.parquet

mpm.csv

model_results.parquet

bootstrap_projections.csv

modeled-thermal-traits.tsv

sst.parquet

culture_syn.csv


Please ensure that these files are present in the same directory as the R script files.

Output Data

The code generates the following output files:



Figures: Figure1.png, Figure2.png, Figure3.png, FigureS1.png, FigureS2.png, FigureS3.png, FigureS4.png, FigureS5.png, FigureS6.png, FigureS9.png, FigureS11.png, FigureS12.png

CSV files: bootstrap_parameters.csv, cultures_thermal_reactions.csv


License

This code is licensed under the MIT License.