cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19451668
title: Additional file 2 of Phylogeographic relationships and the evolutionary history of the Carassius auratus complex with a newly born homodiploid raw fish (2nNCRC)

description: Additional file 2. Sequence information including the GenBank accession number, species name and ID for reconstructing the phylogenetic tree based on 98 mitochondrial genome.
DOI: 10.6084/m9.figshare.16305795
title: Additional file 3 of Comparative transcriptomic analyses of glucosinolate metabolic genes during the formation of Chinese kale seeds

description: Additional file 3: Supplemental Table 1. Glucosinolate profiles and their content in the seed and corresponding silique walls at different stages.
DOI: 10.6084/m9.figshare.16305801
title: Additional file 5 of Comparative transcriptomic analyses of glucosinolate metabolic genes during the formation of Chinese kale seeds

description: Additional file 5: Supplemental Table 3. GS transporter related genes in Chinese kale. The value of log2 (B/A) reflects the comparison of gene expression level in B compared with the A, greater than 0 means that the gene expression level of the treatment group is up-regulated, and less than 0 means that it is down-regulated. A represents the control group, B represents the treatment group. When log2(B/A) &gt; 2, it means significantly regulated.
DOI: 10.6084/m9.figshare.19451671
title: Additional file 3 of Phylogeographic relationships and the evolutionary history of the Carassius auratus complex with a newly born homodiploid raw fish (2nNCRC)

description: Additional file 3. Sequence information including the GenBank accession number, species name, sampling location of 831 cytb for haplotype network.
DOI: 10.6084/m9.figshare.19451671.v1
title: Additional file 3 of Phylogeographic relationships and the evolutionary history of the Carassius auratus complex with a newly born homodiploid raw fish (2nNCRC)

description: Additional file 3. Sequence information including the GenBank accession number, species name, sampling location of 831 cytb for haplotype network.
DOI: 10.6084/m9.figshare.19451677
title: Additional file 5 of Phylogeographic relationships and the evolutionary history of the Carassius auratus complex with a newly born homodiploid raw fish (2nNCRC)

description: Additional file 5. Sequence information including the GenBank accession number, species name, sampling location of 247 cytb for divergence time estimation.
DOI: 10.6084/m9.figshare.19451683.v1
title: Additional file 7 of Phylogeographic relationships and the evolutionary history of the Carassius auratus complex with a newly born homodiploid raw fish (2nNCRC)

description: Additional file 7. Sequence information including species name, GenBank accession number and River system of 26 mitochondrial genome for ancestral range reconstruction of Cyprinus, Megalobrama and C. auratus complex just distributed in China.
DOI: 10.6084/m9.figshare.22878683.v1
title: Learning nonequilibrium statistical mechanics and dynamical phase transitions

description: (c) Lab of Machine Learning and Complex Systems (2023). All rights reserved.

A software package for the manuscript "Machine learning dynamical phase transitions in nonequilibrium statistical mechanics"

DPT stands for dynamical phase transitions. It tracks the time evolution of nonequilibrium statistical mechanics by training the variational autoregressive neural network, which generates the time evolution of the joint probability distribution and the dynamical partition function. This approach is applicable to uncover dynamical phase transitions, such as for the spin-flip activity.
DOI: 10.6084/m9.figshare.24521431.v1
title: Predicting the risk and speed of drug resistance emerging in soil-transmitted helminths during preventive chemotherapy

description: Data that support the findings of the paper "Predicting the risk and speed of drug resistance emerging in soil-transmitted helminths during preventive chemotherapy" by Luc E. Coffeng, Wilma A. Stolk, and Sake J. de Vlas. Data were simulated with the R package simresist v1.1.1 (https://gitlab.com/luccoffeng/simresist; frozen version used to generate these files can be found at https://doi.org/10.5281/zenodo.10442358). Code to reproduce these simulated data can be found here: https://gitlab.com/luccoffeng/simresist-nature-comms-sth-paper.
DOI: 10.6084/m9.figshare.13684763
title: Additional file 5 of Global transcriptomic analysis reveals Lnc-ADAMTS9 exerting an essential role in myogenesis through modulating the ERK signaling pathway

description: Additional file 5: Table S3. List of 755 DEGs between adipogenic and myogenic precursors derived from pig skeletal muscle. Table S4. List of GO terms based on 755 DEGs between adipogenic and myogenic percursors derived from pig skeletal muscle. Table S5. List of KEGG terms based on 755 DEGs between adipogenic and myogenic percursors derived from pig skeletal muscle.
DOI: 10.6084/m9.figshare.13684552
title: Additional file 2 of Identification and co-expression analysis of long noncoding RNAs and mRNAs involved in the deposition of intramuscular fat in Aohan fine-wool sheep

description: Additional file 2 Table S2. The summary of lncRNAs identified in the libraries.
DOI: 10.6084/m9.figshare.13684570
title: Additional file 7 of Identification and co-expression analysis of long noncoding RNAs and mRNAs involved in the deposition of intramuscular fat in Aohan fine-wool sheep

description: Additional file 7 Table S7(A). GO enrichment analysis of differentially expressed target mRNAs of differentially expressed lncRNAs in the study. Table S7 (B). KEGG enrichment analysis of differentially expressed target mRNAs of differentially expressed lncRNAs in the study.
DOI: 10.6084/m9.figshare.13684570.v1
title: Additional file 7 of Identification and co-expression analysis of long noncoding RNAs and mRNAs involved in the deposition of intramuscular fat in Aohan fine-wool sheep

description: Additional file 7 Table S7(A). GO enrichment analysis of differentially expressed target mRNAs of differentially expressed lncRNAs in the study. Table S7 (B). KEGG enrichment analysis of differentially expressed target mRNAs of differentially expressed lncRNAs in the study.
DOI: 10.6084/m9.figshare.13684549.v1
title: Additional file 1 of Identification and co-expression analysis of long noncoding RNAs and mRNAs involved in the deposition of intramuscular fat in Aohan fine-wool sheep

description: Additional file 1 Table S1. The summary of protein-coding genes identified in the libraries.
DOI: 10.6084/m9.figshare.16306020
title: Additional file 1 of Whole-genome methylation analysis of testicular germ cells from cryptozoospermic men points to recurrent and functionally relevant DNA methylation changes

description: Additional file 1. Table S1: Clinical parameters. Table S2: Primers for generating amplicons for targeted bisulfite-sequencing. Table S3: MEST, H19, XIST and DDX4 methylation values obtained by DBS for the testicular sperm samples. Table S4: WGBS statistics. Quality control parameters were based on QualiMap and MethylDackel reports. Table S5: WGBS methylation values for the 50 imprinting controls regions. Table S6: High-confidence TGC unmethylated regions. Table S7: High-confidence TGC low-methylated regions. Table S8: WGBS methylation values for the 1329 DMRs. Table S9: Annotations for the 271 CTR-CZ DMRs. Table S10: DMR-associated genes. Table S11: Differentially expressed DMR-associated genes using tradeSeq. Table S12: Differentially expressed DMR-associated genes using MAST.
DOI: 10.6084/m9.figshare.13684555.v1
title: Additional file 3 of Identification and co-expression analysis of long noncoding RNAs and mRNAs involved in the deposition of intramuscular fat in Aohan fine-wool sheep

description: Additional file 3 Table S3. Sequence information of all expressed lncRNAs found in the study.
DOI: 10.6084/m9.figshare.16306020.v2
title: Additional file 1 of Whole-genome methylation analysis of testicular germ cells from cryptozoospermic men points to recurrent and functionally relevant DNA methylation changes

description: Additional file 1. Table S1: Clinical parameters. Table S2: Primers for generating amplicons for targeted bisulfite-sequencing. Table S3: MEST, H19, XIST and DDX4 methylation values obtained by DBS for the testicular sperm samples. Table S4: WGBS statistics. Quality control parameters were based on QualiMap and MethylDackel reports. Table S5: WGBS methylation values for the 50 imprinting controls regions. Table S6: High-confidence TGC unmethylated regions. Table S7: High-confidence TGC low-methylated regions. Table S8: WGBS methylation values for the 1329 DMRs. Table S9: Annotations for the 271 CTR-CZ DMRs. Table S10: DMR-associated genes. Table S11: Differentially expressed DMR-associated genes using tradeSeq. Table S12: Differentially expressed DMR-associated genes using MAST.
DOI: 10.6084/m9.figshare.13684573.v1
title: Additional file 8 of Identification and co-expression analysis of long noncoding RNAs and mRNAs involved in the deposition of intramuscular fat in Aohan fine-wool sheep

description: Additional file 8 Table S8. Primers used in the qRT-PCR analysis.
DOI: 10.6084/m9.figshare.13684555
title: Additional file 3 of Identification and co-expression analysis of long noncoding RNAs and mRNAs involved in the deposition of intramuscular fat in Aohan fine-wool sheep

description: Additional file 3 Table S3. Sequence information of all expressed lncRNAs found in the study.
DOI: 10.48370/ofd/7qatig
title: Myodes glareolus - 34471, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1963-12-29, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/ieezoi
title: Myodes glareolus - 117502, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1975-09-30, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/tfj9ot
title: Myodes glareolus - 13356, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-09-02, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/7u1kxz
title: Myodes glareolus - 146857, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1983-07-03, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/vs7dz5
title: Myodes glareolus - 155139, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1987-05-29, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/muamiz
title: Myodes glareolus - 12309, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-08-08, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/d8bssi
title: Myodes glareolus - 71773, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-01-24, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/chruui
title: Myodes glareolus - 13073, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-08-28, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/xgugqd
title: Myodes glareolus - 13516, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-09-04, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/j1x4cl
title: Myodes glareolus - 25509, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1961-08-09, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/tk4bct
title: Myodes glareolus - 159968, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1990-07-27, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/xrbgqr
title: Myodes glareolus - 90925, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1970-06-06, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/cttkow
title: Myodes glareolus - 42415, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1965-02-19, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/ux3koc/urc4fo
title: FMW Botryohypochnus isabellinum (Fr.) J. Erikss. M-4907 (2).JPG

description: :unav
DOI: 10.48370/ofd/utsfbi
title: Myodes glareolus - 76398, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-08-05, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/ux3koc/xhqdxe
title: FMW Botryohypochnus isabellinum (Fr.) J. Erikss. M-4907 (3).JPG

description: :unav
DOI: 10.48370/ofd/yl9j3i
title: Myodes glareolus - 43448, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1965-05-13, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/ux3koc/bhj0bt
title: FMW Botryohypochnus isabellinum (Fr.) J. Erikss. M-4907.JPG

description: :unav
DOI: 10.48370/ofd/0gpioi
title: Myodes glareolus - 24381, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1961-05-02, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/ux3koc
title: Botryohypochnus isabellinum (Fr.) J.Erikss., 4907

description: Fungarium Macromycetes
DOI: 10.48370/ofd/nun5rt
title: Myodes glareolus - 157391, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1988-09-08, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/xczcfa
title: Myodes glareolus - 155184, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1987-06-22, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/felr0o
title: Myodes glareolus - 10637, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-07-13, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/3xeluf
title: Myodes glareolus - 11762, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-07-27, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/bmdvel
title: Myodes glareolus - 110409, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1973-07-22, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/mdi8vl
title: Myodes glareolus - 18059, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1957-05-23, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/nkswgk
title: Myodes glareolus - 5080, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1954-07-10, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/ehosk2
title: Myodes glareolus - 40642, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-11-12, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/w4saqd
title: Myodes glareolus - 30945, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1962-11-17, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/thurrh
title: Myodes glareolus - 24436, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1961-05-10, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/mlfh0b
title: Myodes glareolus - 163813, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1988-10-20, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/8m5cu7
title: Myodes glareolus - 136222, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1980-07-30, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/u6h8wg
title: Myodes glareolus - 10704, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-07-14, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/kjgans
title: Myodes glareolus - 74484, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-06-12, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/38rxge
title: Myodes glareolus - 153479, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1986-09-19, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/fkxtps
title: Myodes glareolus - 2458, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1953-07-20, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/gldikb
title: Myodes glareolus - 155106, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1987-05-27, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/l1ebla
title: Myodes glareolus - 152645, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1986-05-22, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/xbach8
title: Myodes glareolus - 74351, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-05-26, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/jheumk
title: Myodes glareolus - 29094, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1962-09-12, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/aitryn
title: Myodes glareolus - 14298, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-09-17, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/tc6px9
title: Myodes glareolus - 4734, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1954-06-20, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/kqx96b
title: Myodes glareolus - 137874, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1980-10-11, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/rvs7w2
title: Myodes glareolus - 104535, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1972-04-18, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/yuc2ba
title: Myodes glareolus - 9391, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-06-25, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/txvhuo
title: Myodes glareolus - 71950, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-03-02, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/wow9vo
title: Myodes glareolus - 42287, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1965-01-27, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/vqps4i
title: Myodes glareolus - 8013, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-05-04, in: Białowieża National Park, Poland. Material type:
DOI: 10.6084/m9.figshare.19852825
title: minimusNDH064_pseudohap.REFERENCE_autosomes.bed

description: Bed file for the Tamais minimus reference genome for autosome linked scaffolds only
DOI: 10.6084/m9.figshare.19852825.v1
title: minimusNDH064_pseudohap.REFERENCE_autosomes.bed

description: Bed file for the Tamais minimus reference genome for autosome linked scaffolds only
DOI: 10.48370/ofd/t35tyx
title: Myodes glareolus - 119128, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1976-07-15, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/2yibik
title: Myodes glareolus - 8135, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-05-18, in: Białowieża National Park, Poland. Material type: