cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/iqmzde
title: Scripts R pour générer un jeu de données comparant les tendances climatiques de références actuelles aux projections futures pour une série d’indicateurs climatiques opérants en production maraîchère

description: Ce dossier est une suite d’outils opérationnels destinée aux scientifiques et professionnels souhaitant accompagner les acteurs des productions maraîchères face au changement climatique. Le dossier s’articule autour d’un script R permettant de générer un ensemble d’indicateurs climatiques opérants pour penser les vulnérabilités de systèmes maraichers face au changement climatique dans un territoire donné à horizon (2031-2060) et identifier des pistes d’adaptation. Le script principal a pour données d'entrée des projections climatiques issues du portail DRIAS-les futurs du climat et DRIAS-les futurs de l’eau (ou issues d’extractions de l’outil INRAE SICLIMA). Il permet le calcul d’indicateurs à l’échelle mensuelle pour une année médiane ou une année extrême en termes de paramètres climatiques. Un dictionnaire des variables et un guide de lecture sont proposés pour extraire les données à utiliser en entrée du script R, pour utiliser ou adapter ce script puis mettre en forme les données dans un tableau synthétique. Un autre script complémentaire est disponible pour simuler le nombre d’heures de froid dont la table de sortie sert au script principal pour cet indicateur. Un exemple de jeu de données de sortie brut et un autre mis en forme sous Excel sont mis à disposition. Les outils ont été appliqués pour une zone géographique incluant la ville d’Avignon dans le Vaucluse (France), bassin historique de production maraichère. Le jeu de données ainsi mis en forme a été le support d’un atelier multi-acteurs (conseillers agricoles, expérimentateurs et scientifiques) en production maraîchère en juillet 2023. Il a conduit les participants à s’approprier comment le climat est susceptible d’évoluer dans leur territoire d’activité. Ceci a facilité la construction d'une réflexion partagée sur (i) les vulnérabilités des systèmes maraîchers actuels et (ii) les pistes à développer pour les adapter. Ce travail a été financé par le GIS PIClég et fait l'objet d'un rapport : Husson, L., & Lefèvre, A. (2023). Comment identifier les impacts du changement climatique sur les systèmes maraîchers et les pistes d'adaptation ? Outils opérationnels et premiers résultats appliqués aux systèmes maraîchers du sud de la France. INRAE. https://doi.org/10.17180/QHS3-E032. Il a bénéficié des produits du projet CLIMALEG (https://doi.org/10.57745/0BWBPD). Les fichiers sont organisés en différents dossiers, donc pour les voir, penser à utiliser la visualisation par "Arborescence".
DOI: 10.57745/l4rabj
title: Simulated daily water oxygen time series data (full water profile) for lake Geneva over the period 1850-2100, based on IPCC ssp126, ssp370 and ssp585 scenarios.

description: This repository includes the setup and output from model simulations performed using the 1D deterministic GLM-AED2 model on Lake Geneva to investigate long-term variations of dissolved oxygen and hypoxia regime in the lake over the period 1850–2100. Both GLM and AED2 models are open-source and publicly available: GLM model: https://github.com/AquaticEcoDynamics/glm-aed AED2 model: https://aquaticecodynamics.github.io/aed-science/ The model is constrained by IPCC scenarios SSP1-RCP2.6, SSP3-RCP7.0, and SSP5-RCP8.5 (https://data.isimip.org) and validated according to 63 years of observation data collected and stored by the Lake Observatory OLA (https://si-ola.inra.fr). The model configuration files (glm.nml, aed2.nml, aed2_phyto_pars.nml) are provided. Complete data description and method information are provided in Soares et al. (under review). Outputs represent the daily time series of dissolved oxygen concentration profiles in Lake Geneva over the historical period (1850–2020) and future projections (2021–2100) for the three scenarios.
DOI: 10.57745/llrjo0
title: CADO airplane database

description: This database contains data of nearly 230 airplanes. Each airplane is described by 31 parameters such as: name, IATA code and category (general, commuter, regional, short-medium, long range), geometry, mass, max speed, typical cruise mach number, typical range, typical approach speed, take-off field length, landing field length, number of engine, type of engine, typical engine model, bypass ratio, max thrust or max power. This database relies on various sources such as the manufacturer website, flight manual (if available), books, Eurocontrol aircraft performances. This data are NOT intended to be used in an operational context. They were gathered in order to provide orders of magnitude and find trends between various parameters in a preliminary aircraft design context. Please consider citing the following publication if you reuse this dataset.
DOI: 10.57745/meqqix
title: AMGv2 parameters

description: Parameters (for plant carbon inputs, exogenous organic matter carbon inputs and soil organic carbon mineralization) related to the AMGv2 model. These parameters are provided by the AMG Consortium (which includes INRAE, Agro-Transfert Ressources et Territoires, Arvalis Institut du Végétal and LDAR) and by Terres Inovia. They are applicable for average French arable crop conditions. A full description of the AMGv2 model can be found in Clivot et al. (2019): https://doi.org/10.1016/j.envsoft.2019.04.004
DOI: 10.57745/klxtvu
title: Dataset for the article "Gravel replenishment downstream of dams: insights from a flume experiment in a straight embanked channel"

description: The dataset of this research is publicly accessible and is attached in the supplementary materials of this paper. The dataset is entirely stored with the following The file 'DEMs' contains all the 1cm DEM derived from raw 3D point cloud. The file 'DoDs' contains the DoDs presented in the paper. DoDs are also used to estimate total erosion and deposition volume, the file '10cm_Sediment_Budgets' inside contains the erosion and deposition volume at each 10cm step from upstream to downstream. This data is also presented in the paper. The file 'LSPIV' contains the 2D flow velocities obtained from LSPIV analysis on videos recorded from the ceilling camera. The file 'Timelapse' contains the orthoimages from the ceilling camera and the results of SR erosion and sediment wave propagation from image analysis.
DOI: 10.57745/kraxya
title: Dataset for : "A new dataset to elucidate inaccurate temperature thresholds masking a hidden source of risk uncertainties in commun wheat"

description: Database of thermal stress thresholds for common wheat and associated metadata (including geographic location, wheat type, targeted physiological processes, and references) used in the article "A New Dataset to Uncover Inaccurate Temperature Thresholds That Mask Hidden Sources of Risk and Uncertainty".
DOI: 10.57745/lboegq
title: LCA of single-use versus returnable and reusable bottles - initial models

description: This dataset contains data related to the LCA of initial modesl for comparing single-use and returnable and reusable bottle strategies within FAIRCHAIN project.
DOI: 10.57745/lhpgjt
title: Données de réplication pour : Merging country, continental and global predictions of soil texture: Lessons from ensemble modelling in France

description: La demande croissante d'informations sur les sols a conduit au développement rapide des produits de cartographie numérique des sols (Digital Soil Mapping - DSM). Par conséquent, plusieurs cartes pédologiques sont parfois disponibles pour une même zone. Plutôt que de sélectionner la meilleure carte, l'ensemble de modèles permet de capitaliser sur les informations pédologiques existantes et d'améliorer la précision de la carte finale. Dans cette étude, nous avons assemblé quatre cartes de texture de la couche arable de la France avec une résolution différente, réalisées par différents organismes aux niveaux national, européen et mondial.
DOI: 10.57745/lqv2ok
title: Experimental and modeling study of auto-ignition delay times and product formations during acetone combustion

description: The pyrolysis and oxidation of acetone were studied using three complementary experimental setups. Jet-stirred reactor experiments were performed at four equivalence ratios (ϕ = 0.5, 1, 2, and ∞), at pressure of 1.067 bar (800 Torr) and over the temperature range of 700–1200 K for pyrolysis and 600–1150 K for oxidation. The decomposition of acetone starts around 800 K with a conversion rate of 50% obtained around 1000 K in both pyrolysis and oxidation studies. The main stable products detected in both conditions are small hydrocarbons (methane, ethane, and ethylene), with also acetaldehyde, CO and CO2 for oxidation. Oscillation behavior was detected beyond 1000 K under oxidation conditions and the products were followed with on-line mass spectrometry. Ignition delay times were measured using a rapid compression machine at pressures of 20 and 40 bar under non-diluted stoichiometric conditions over the temperature range 850-1100 K. The ignition delay times measured in the present study, combined with shock tube data of literature, exhibit a slight inflexion to the Arrhenius behavior, but no negative temperature coefficient. Laminar burning velocities were measured using a flat flame burner at atmospheric pressure for three fresh gas temperatures: ambient temperature, 358 and 398 K. A detailed kinetic model of the combustion of acetone including 852 species and 3265 reactions was developed. This new kinetic mechanism predicts relatively well the experimental measurements of ignition delay times, the mole fraction of the products in the jet-stirred reactor including oscillations and laminar burning velocities. Related flow rate and sensitivity analysis are also presented providing new insights into the acetone reaction network.
DOI: 10.57745/lsmx6g
title: Supporting Code: "Quantitative Resistance Deployment Can Strengthen Epidemics in Perennial Plants by Selecting Maladapted Pathogen Strains"

description: Code related to the article "Quantitative resistance deployment can strengthen epidemics in perennial plants by selecting maladapted pathogen strains", accepted in Evolutionary Applications. Authors: Soularue JP, Halkett F., Saubin M., Denni S., Demené A., Dutech C., Robin C. Contact information: jean-paul.soularue@inrae.fr
DOI: 10.57745/lyeuww
title: Global metabolome changes induced by environmentally relevant conditions in a marine-sourced Penicillium restrictum

description: Marine fungi have been found in all habitats and are able to adapt to their environmental niche con-ditions. In this study, a combination of LC-HRMS and GC-MS analytical approaches was used to analyse the whole metabolic changes of a marine sourced Penicillium restrictum strain isolated from a marine shellfish area. The P. restrictum MMS417 strain was grown on seven different media in-cluding an ecological one with two different water sources (synthetic sea water and distilled water) conditions following the OSMAC approach. Extracts of all media were analysed by LC-HRMS (lipids and specialised metabolites profiling) and GC-MS (fatty acids profiling). Aquired data were analysed using a multiblock strategy to highlight metabolic modification in regards to water condi-tions and to environmentally relevant conditions (mussel-based culture medium). This revealed that fatty acid composition of lipids was the most altered part of the explored metabolisms either looking to water effect and to environmentally relevant conditions. In particular, data showed that P. re-strictum MMS417 is able to produce lipids that include fatty acids usually produced by the mussel itself. This study also provides insight into the P. restrictum adaptation to marine salinity through fatty acids alteration. and shows that lipid metabolisms if far more altered in an OSMAC approach than the specialized metabolism. This study finally highlights the need for using environnement-mimicking culture conditions to reveal the metabolic potentialities of marine microbes.
DOI: 10.57745/mh1wfp
title: Reconstructing queen genotypes by pool sequencing colonies in eusocial insects: statistical methods and their application to honeybee

description: This repository contains the necessary files to perform the analysis presented in the paper: SE Eynard, A Vignal, B Basso, Y Le Conte, A Decourtye, L Genestout, E Labarthe, F Mondet, K Tabet, B Servin (2022). Reconstructing queen genotypes by pool sequencing colonies in eusocial insects: Statistical methods and their application to honeybee. https://doi.org/10.1111/1755-0998.13685 It includes the parameter files needed for the simulations, the file containing allele frequencies for the reference populations as well as the pool-sequence data needed for the validation of the model on real data.
DOI: 10.57745/lntokl
title: Fiches de diagnostic régional des modèles hydrologiques de surface du projet Explore2

description: Un diagnostic des modèles hydrologiques mobilisés dans le projet Explore2 a fait l’objet d’un rapport détaillé (Sauquet et al., 2023). L’objectif n’était pas de mettre en compétition les modèles hydrologiques mais bien d’aider, autant que possible, à faire un choix éclairé sur le groupement de modèles à privilégier pour caractériser le devenir des caractéristiques hydrologiques d’un cours d’eau sous un climat modifié. Ce diagnostic repose sur une sélection de critères numériques qui permettent d’évaluer la capacité des modèles à reconstituer les différentes phases des régimes hydrologiques et à fournir des débits fiables en extrapolation spatiale (en dehors des points d’évaluation). Des fiches de synthèse ont été établies aux points d’évaluation et à l’échelle régionale et sont téléchargeables sur le portail DRIAS les futurs de l’eau. Une notice de lecture accompagne ces fiches.
DOI: 10.57745/lpyoc1
title: Barcoding enhanced soil macrofauna inventory data - Laqueuille forest - 2022

description: This dataset has been used to produce the results of the manuscript "Use of massive DNA barcoding to monitor biodiversity: a test on forest soil fauna" submitted to the journal Forest Ecology and Management by the following authors: Franck Jabot, Gwenaëlle Auger, Pauline Bonnal, Mathilde Pizaine, Marilyn Roncoroni, Sandrine Revaillot, Julien Pottier.
DOI: 10.57745/lrixn4
title: Questionnaire "préliminaire" pour mener un retour d'expérience sur les impacts d'une inondation auprès de différents profils de personnes

description: Ce questionnaire a été élaboré dans le cadre des travaux de l'observatoire so-ii pour collecter des données d'entretiens sur les impacts des inondations. Il est dit "préliminaire" car ce questionnaire est assez synthétique et il permet également de suivre les contacts établis avec les personnes et d'organiser des rendez-vous pour mener des entretiens plus détaillés. Il a été utilisé depuis 2022 lors d'entretiens menés en face à face avec différents profils de personnes (habitant, entrepreneur, agriculteur, employé d'installation publique, occupant de garage pour voiture, employé de structure associative). L'outil utilisé pour ce questionnaire est le logiciel libre ODK (généré à partir du fichier .xls du questionnaire), plus d'informations à https://docs.getodk.org/. Cette étude s'inscrit dans la Tâche d'Observation REX de so-ii. Plus d'informations à : http://so-ii.org/to-rex/. Pour toute question, n'hésitez à nous contacter à : so-ii@so-ii.org. French (2024-08-26)
DOI: 10.57745/mnkn9t
title: Leaching of Pb and Zn from contaminated mine residues, amended or not with iron oxides and organic matter

description: Dissolution of Pbbearing mineral phases. These reactions were maintained in thermodynamic disequilibrium due to the renewal of pore solution at each watering step. In amended tailings, this pattern was strengthened as the iron oxides contributed by ochre maintained a low Pb concentration in pore solution by sorbing released Pb. Sorption reactions were enhanced by the increase in pH induced by the dissolution of calcium carbonate initially present in ochre. The latter reaction was partially counterbalanced in tailings amended with manure as organic matter provided sufficient energy to fuel microbial aerobic respiration, leading to the release of protons. Pb desorption was promoted by this pH drop. The magnitude of these reactions was not strictly proportional to the amount of manure added. For 0.15% by weight, aerobic respiration did not occur whereas its yield was similar for 1% and 2%. By providing a better understanding of the effect of amendment, this multicomponent mixing model is a powerful tool to optimize the reclamation of tailings, in order to limit contaminant transfer to the environment.
DOI: 10.57745/mqkwa1
title: Données métérologiques sur une parcelle agricole de la Plateforme PRESTI à Murviel-les-Montpellier (Hérault)

description: Données météorologiques d'une station positionnée sur une parcelle agricole de la Plateforme PRESTI, à Murviel-les-Montpellier (34), proche de la station d'épuration (Parcelle cadastrale AY0100, point GPS : 43.603169, 3.762037). Les mesures réalisées proviennent des différents instruments de la station : pyranomètre, anémomètre, girouette, hygromètre, thermomètre, pluviomètre. Les données couvrent la période entre le 22/02/2018 et le 25/04/2024, elles sont divisées en deux fichiers : 20180222_20240425_WSt_MLMP_D_l1.xlsx : qui détaille les mesures par jour, 20180222_20240425_WSt_MLMP_H_l1.xlsx : qui détaille les mesures par heure
DOI: 10.57745/j4yl4i
title: Codes for image preparation and MobileNet CNN

description: The following Python scripts are used for automatic image classification of radiolarians or more specifically from closely related species of the genus Podocyrtis by using the MobileNet version 1 convolutional neural network (CNN) by Carlsson et al., 2022. The first file consists of a script that rotate images into the same angle and resize them into an equal size. The second file consist of a prediction script and the third one a MobileNet version 1 CNN script for training an image dataset.
DOI: 10.57745/jgu8cy
title: Characterization of biodegradable core–clad borosilicate glass fibers with round and rectangular cross-section

description: Data set from Characterization of biodegradable core–clad borosilicate glass fibers with round and rectangular cross-section. - Publication : Hongisto M., Ghanavati S., Lemière A., Haus G., Boraiah S., Cornet L., Poulon-Quintin A., Pagnoux D., Bernard D., Massera J., Petit L., Jubera V. and Danto S. Characterization of biodegradable core–clad borosilicate glass fibers with round and rectangular cross-section. Journal of the American Ceramic Society 2023 vol.106, n°11, p.6527-6540. HAL : Hal-04197166 Dataset production context : Here, we report on core–clad bioactive borosilicate fibers, that we have prepared both with round and rectangular cross‐section profile. The exposed approach, which relies on the stacking and drawing of glass slabs, demonstrates our ability to develop bioactive‐based glass fibers with tailored cross‐section profiles. Tens‐of‐meters‐long fibers were successfully drawn, although suffering from elevated losses in the case of the rectangular ones. The response of the fibers in simulated body fluid was studied for both geometries. We found that a round cladding can act as protective layer, tempering effects of the corrosion. We also noticed that rectangular fibers are more prone to degradation, the enhanced corrosion beginning from their sharp corners as they accumulated residual tensile stress during drawing. To the best of our knowledge, this is the first report on the effect of residual tensile stresses from surface tension deformations applied to the corrosion of rectangular fibers. As geometry plays a critical role on the biodegradation behavior of the fiberglass, we believe the enclosed results could lead to the design of fiber devices with tailored cross‐section profile in order to tune their rate of degradation on solely based geometrical effects. For more information see the article.
DOI: 10.57745/k2bwtl
title: MassiveFold data for target H1230 - T276

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/) - `CAPRI_assessment.csv` file contains the CAPRI assessment for the target (from https://www.capri-docking.org/assessment/) - `CAPRI_scoring.pdb.gz` is a multi-pdbs containing all the MassiveFold predictions for the target. It was used for the CAPRI scoring phase.
DOI: 10.15468/dl.qdeus4
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cestraeus plicatilis Valenciennes, 1836"
 ]
}

 The dataset includes 18 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0340559-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywdd9u
title: Occurrence Download

description: A dataset containing 716 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andrographis paniculata (Burm.fil.) Nees"
 ]
}

 The dataset includes 716 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0200135-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vsrrwy
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plinia microcycla Urb."
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017264-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yr45re
title: Occurrence Download

description: A dataset containing 420 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Halostachys caspica (M.Bieb.) C.A.Mey."
 ]
}

 The dataset includes 420 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203827-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zfuyh
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalyptus camaldulensis Denham",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001429-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.