cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-1975523930
title: Structural Biology BAG - Portugal

description: The Portuguese MX BAG includes 16 PIs from three different institutions. Our research interests include soluble and membrane proteins of biomedical interest from humans or pathogenic organisms, several of which can be drug targets. A focal point of the Portuguese MX BAG is also structural enzymology, aimed at the elucidation of reaction mechanisms, characterization of active sites, and understanding inhibition tolerance in proteins with potential biomedical or biotechnological applications. In several cases, complementary Structural Biology approaches are employed, combining MX with SAXS and CryoEM.
DOI: 10.15151/esrf-es-2006585234
title: The Israeli BAG

description: The Israeli BAG plans to increase its usage of ESRF in the coming year. We are having more projects that utilize the ESRF single crystal capabilities as well as the continuous increase in SAXS time. As mentioned last year It is not trivial to provide a summary that covers all research topics encompassed by the BAG. We expect some BAG members to resume using ESRF after utilizing other facilities. As much as we appreciate the immense capacities of ESRF, the majority of BAG members are discontent (to say the least) regarding the post-shutdown/Covid-19 travel regulations imposed by the management. It seems that bureaucracy rather than common sense is prevailing and an accompanying letter will be submitted adjoined to the proposal/report. I have not included any requests for ID29 as the BAG members have to become more familiarized with the facility. As for some of the BAG projects, a detailed description is provided in the Global Summary below.
DOI: 10.15151/esrf-es-1999194446
title: Correlative imaging for additive manufacturing of metallic alloys

description: Additive manufacturing of metallic alloys is an innovative process but several scientific issues need to be overcome for a strong development in industry. In this field, relevant scales are ranging from several centimenters down to submicron requiring the development of a multi-scale correlative imaging approach. We propose a dual strategy on ID16B and BM18 to extent their application domains: (i) an experimental approach linking in situ tests at several scales with dedicated sample environment and technical developments; (ii) a numerical approach based on artificial intelligence algorithms to reduce data acquisition (low number of projections, automatic segmentation) and increase quality (enhanced resolution, noise and rings removal). The multi-scale correlative imaging strategy will benefit to other imaging beamlines (BM05, ID19), will be transferable to other materials science fields leading to more industry participation at ESRF, thanks to an associated long life learning project.
DOI: 10.15151/esrf-es-2023186073
title: Beamline alignment and completion of the data acquisition for a sample from LS3230

description: After weekly beamline alignment we will acquire X-ray holographic nanotomography of a fixed and resin embedded mouse cerebellum sample. The sample was imaged during the last session of the experiment LS3230 but two regions remained incomplete due to beam losses.
DOI: 10.15151/esrf-es-1992652753
title: Understanding the self-assembly of cellulose nanocrystals dispersions comprising stimuli-responsive polymers

description: Cellulose nanocrystals (CNCs) are high-aspect ratio colloids that self-organize into liquid crystalline phases in solution. Taking advantage of this self- organization behaviour, we strive to develop soft CNC-based artificial muscles capable of directional (anisotropic) actuation. To this end, we decorate the CNCs with temperature-responsive polymer chains and we subsequently align and cross-link these building blocks to form colloidal hydrogels. To achieve directional actuation, the polymer-grafted CNCs must align along a common direction throughout the entire material. This configuration is extremely challenging to obtain and typically requires the use of external orienting fields such as magnetic fields. Using a combination of small- and wide-angle X-ray scattering (SAXS/WAXS) we aim at unravelling the self-organization of these polymer-grafted CNCs and use the acquired knowledge to realize macroscopically aligned nano composite artificial muscles.
DOI: 10.21227/gt5m-ry85
title: MESSIDOR With Lesion Annotations

description: This dataset is derived from the original MESSIDOR dataset, enhanced with annotations for 10 pathological lesions and laser photocoagulation scars commonly observed in diabetic retinopathy. The annotated lesions include microaneurysms, dot and blot hemorrhages, cotton wool spots, intra-retinal microvascular abnormalities, venous looping, new vessels at the disc, new vessels elsewhere, hard exudates, fibrous proliferans, and pre-retinal or vitreous hemorrhage. The dataset serves as a valuable resource for the development of automated detection and classification systems for diabetic retinopathy and related complications, aiding early screening and diagnosis and tracking its progression through lesion-based analysis.
DOI: 10.5281/zenodo.14769171
title: Records held by the National Archives of Australia with the access status of 'closed' – annual harvests from 2016 to 2025

description: This dataset contains annual harvests of all records held by the National Archives of Australia that have the access status of 'closed' (withheld from public access). The harvests were run on or about 1 January each year from 2016 to 2025. The aim in saving this data is to enable long-term analysis of the NAA's access examination process.

Australian government records become available for public access after 20 years. But before being opened to the public, records go through a process known as access examination to determine whether they should be withheld, either partially or completely. The grounds for exemption are laid out in the Archives Act and include things like national security and personal privacy. If a record is completely withheld from access, the NAA's database, RecordSearch, records its access status as 'closed'.

This dataset was created by scraping the results of a search for records with the access status of 'closed' from RecordSearch. Additional information, including the reasons each file was closed, and the date of the access decision, was scraped from each item record and added to the data. Some normalisation was applied to the reasons, as the format can vary. The method used is documented in this notebook.

It's important to note that records can be re-examined and their access status can change. Also some 'closed' files are actually 'withheld pending advice' – in these cases a final access decision hasn't been made as the NAA has referred the files to their controlling agencies for advice. This means that this dataset should be treated as providing annual snapshots of an active system, not a cumulative record of closed files. Some of the complexities of the access examination system revealed by this data are discussed in the Inside Story article 'Withheld pending advice'.

The fields available in each CSV file vary a little across the years, but the following fields are always available:



identifier – the RecordSearch item identifier

series – series number

control_symbol – item control symbol

title – item title

series_title – series title

contents_date_str – string describing the date range of the file contents

contents_start_date – ISO formatted start date of the file contents

contents_end_date – ISO formatted end date of the file contents

access_status – current access status ('Closed')

access_decision_date – ISO formatted date when access decision was made

reasons – pipe-separated list of normalised reasons for exclusion, these are either references to sections of the Archives Act, such as "33(1)(a)", or a range of other values including "Withheld pending adv", "Closed period",  and "Parliament Class A".


The CSV files from 2022 onward also include access_decision_reasons which contains a pipe-separated list of the unnormalised values.
DOI: 10.5281/zenodo.14769172
title: Records held by the National Archives of Australia with the access status of 'closed' – annual harvests from 2016 to 2025

description: This dataset contains annual harvests of all records held by the National Archives of Australia that have the access status of 'closed' (withheld from public access). The harvests were run on or about 1 January each year from 2016 to 2025. The aim in saving this data is to enable long-term analysis of the NAA's access examination process.

Australian government records become available for public access after 20 years. But before being opened to the public, records go through a process known as access examination to determine whether they should be withheld, either partially or completely. The grounds for exemption are laid out in the Archives Act and include things like national security and personal privacy. If a record is completely withheld from access, the NAA's database, RecordSearch, records its access status as 'closed'.

This dataset was created by scraping the results of a search for records with the access status of 'closed' from RecordSearch. Additional information, including the reasons each file was closed, and the date of the access decision, was scraped from each item record and added to the data. Some normalisation was applied to the reasons, as the format can vary. The method used is documented in this notebook.

It's important to note that records can be re-examined and their access status can change. Also some 'closed' files are actually 'withheld pending advice' – in these cases a final access decision hasn't been made as the NAA has referred the files to their controlling agencies for advice. This means that this dataset should be treated as providing annual snapshots of an active system, not a cumulative record of closed files. Some of the complexities of the access examination system revealed by this data are discussed in the Inside Story article 'Withheld pending advice'.

The fields available in each CSV file vary a little across the years, but the following fields are always available:



identifier – the RecordSearch item identifier

series – series number

control_symbol – item control symbol

title – item title

series_title – series title

contents_date_str – string describing the date range of the file contents

contents_start_date – ISO formatted start date of the file contents

contents_end_date – ISO formatted end date of the file contents

access_status – current access status ('Closed')

access_decision_date – ISO formatted date when access decision was made

reasons – pipe-separated list of normalised reasons for exclusion, these are either references to sections of the Archives Act, such as "33(1)(a)", or a range of other values including "Withheld pending adv", "Closed period",  and "Parliament Class A".


The CSV files from 2022 onward also include access_decision_reasons which contains a pipe-separated list of the unnormalised values.
DOI: 10.6084/m9.figshare.28308716
title: Supplement materials-<b>Genetic Susceptibility to Causal Relationship between Iron Metabolism Disorder Involving Immunocytes and Risk of Pneumonia and Sepsis</b>

description: Supplement materials-<b>Genetic Susceptibility to Causal Relationship between Iron Metabolism Disorder Involving Immunocytes and Risk of Pneumonia and Sepsis</b>
DOI: 10.6084/m9.figshare.28308716.v1
title: Supplement materials-<b>Genetic Susceptibility to Causal Relationship between Iron Metabolism Disorder Involving Immunocytes and Risk of Pneumonia and Sepsis</b>

description: Supplement materials-<b>Genetic Susceptibility to Causal Relationship between Iron Metabolism Disorder Involving Immunocytes and Risk of Pneumonia and Sepsis</b>
DOI: 10.15468/dl.yme7kx
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Indonesia",
 "GadmGid is one of (IDN.12_1, IDN.13_1, IDN.14_1, IDN.34_1, IDN.35_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is CR",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 2015-2025"
 ]
}

 The dataset includes 212 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004934-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14762937
title: Demo data for HapSMA

description: This Zenodo contains input files for the demo data analsis for HapSMA workflow (https://github.com/UMCUGenetics/HapSMA/)The roofolder contains al data files to start run_demo.sh as described in de HapSMA documentation.Folder results contain output BAM and VCF files, and can be used for comparisons.This demo dataset contains ONT sequencing data from sample HG02071 that was generated as part of the Human PanGenomics Project and downloaded from https://registry.opendata.aws/hpgp-data (Liao et al. 2023, Nature, https://doi.org/10.1038/s41586-023-05896-x ).BAM file has been filtered for region chr5:69000000-72000000 to reduce filesize.
DOI: 10.5281/zenodo.14762936
title: Demo data for HapSMA

description: This Zenodo contains input files for the demo data analsis for HapSMA workflow (https://github.com/UMCUGenetics/HapSMA/)The roofolder contains al data files to start run_demo.sh as described in de HapSMA documentation.Folder results contain output BAM and VCF files, and can be used for comparisons.This demo dataset contains ONT sequencing data from sample HG02071 that was generated as part of the Human PanGenomics Project and downloaded from https://registry.opendata.aws/hpgp-data (Liao et al. 2023, Nature, https://doi.org/10.1038/s41586-023-05896-x ).BAM file has been filtered for region chr5:69000000-72000000 to reduce filesize.
DOI: 10.15468/dl.4z8ydg
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Colección de plantas vasculares del Herbario \"Jaime Andrés Rodríguez\". LEB",
 "PublishingOrg is 730cd32c-627f-44a8-9d93-fcfb23ade969",
 "TaxonKey is Carex leporina L."
 ]
}

 The dataset includes 144 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004936-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10615301
title: ⏳ endoflife.date database (duckdb)
DOI: 10.6084/m9.figshare.26029226
title: The effects of prenatal exposure to opioids on early childhood development: context matters most

description: The opioid crisis has brought an increasing focus on the long-term outcomes of children following prenatal opioid exposure. Evidence to date has been conflicting, which has caused confusion and concern amongst parents, caregivers, social service providers, medical providers and policy makers. This review systematically evaluated the highest quality studies relating prenatal exposure to opioids with early childhood developmental outcomes. It focused on developmental outcomes as measured by the Bayley Scales of Infant and Toddler Development, encompassing cognitive, motor, and psychosocial domains of child development. Although several articles reported correlations between prenatal opioid exposure and poor early childhood developmental outcomes, these relationships were no longer statistically significant after adjusting for socio-environmental factors. Additional research is needed to determine the extent of any relationship of socio-environmental factors with early childhood development in children prenatally exposed to opioids. This review suggests that socio-environmental factors may be significantly related to poor early childhood outcomes in the presence of prenatal opioid exposure.
DOI: 10.6084/m9.figshare.26029226.v1
title: The effects of prenatal exposure to opioids on early childhood development: context matters most

description: The opioid crisis has brought an increasing focus on the long-term outcomes of children following prenatal opioid exposure. Evidence to date has been conflicting, which has caused confusion and concern amongst parents, caregivers, social service providers, medical providers and policy makers. This review systematically evaluated the highest quality studies relating prenatal exposure to opioids with early childhood developmental outcomes. It focused on developmental outcomes as measured by the Bayley Scales of Infant and Toddler Development, encompassing cognitive, motor, and psychosocial domains of child development. Although several articles reported correlations between prenatal opioid exposure and poor early childhood developmental outcomes, these relationships were no longer statistically significant after adjusting for socio-environmental factors. Additional research is needed to determine the extent of any relationship of socio-environmental factors with early childhood development in children prenatally exposed to opioids. This review suggests that socio-environmental factors may be significantly related to poor early childhood outcomes in the presence of prenatal opioid exposure.
DOI: 10.6084/m9.figshare.28308704
title: The influence of perceived usability on LMS acceptance of lecturers in Ghana: A PLS-SEM disjoint two-stage approach

description: This research focuses on determining the influence of perceived usability on the acceptance of learning management systems among lecturers in Ghana. The disjoint two-phase approach was used in analyzing data from 255 respondents from four higher education institutions in Ghana. The findings reveal the critical role of usability in the acceptance learning management systems.
DOI: 10.21227/r40c-7464
title: Amrita'a AI based recognition and analytical application

description: This dataset comprises 2,052 .jpeg image samples from 74 students, offering a comprehensive portrayal of student life. Capturing academic, extracurricular, and social dimensions, it provides insights into diverse learning environments, activities, and interactions. From classrooms to sports fields, cultural events to social gatherings, the dataset encapsulates the multifaceted nature of student experiences. Researchers can utilize these images to explore educational dynamics, analyze social behaviors, and develop algorithms for image recognition and analysis. With its rich diversity and breadth of content, this dataset serves as a valuable resource for interdisciplinary studies addressing various aspects of student life and well-being.
DOI: 10.6084/m9.figshare.27159378
title: Ditched and walled enclosures in Prehistoric Iberia (4th-3rd millennia cal. BCE): Like oil and water_Jiménez-Jáimez et al._Supplementary Data

description: Iberian Copper Age “ditched” and “walled” enclosure sites are often thought to represent two clearly distinguishable groups of sites. However, the discovery of sites where both ditches and walls are present (“mixed sites”) complicates things. There are good reasons to question whether the aforementioned dichotomy is real, or if, instead, it is largely an artifact of research, resulting from a combination of poorly preserved archaeological contexts and inadequate survey strategies and methods which missed the potential integration of both building techniques at the same sites. This paper will address this problem from a Pan-Iberian perspective, as we will compare type-sites across multiple Iberian regions. We shall formulate and test seven relevant hypotheses by undertaking multiple comparative analyses at various scales on top of a purpose-built database including 345 sites. Among others, we will address questions such as: How frequent or rare are mixed sites? Is the perceived duality of the archaeological record (ditched versus walled) a by-product of preservation issues or the differential availability of certain building materials? Did walled and ditched enclosures really coexist in space and time? We conclude that: (a) Chalcolithic Iberian enclosures are markedly dichotomous (ditched vs walled); (b) “mixed” sites are rare exceptions rather than the rule; (c) walled and ditched enclosures show important differences in key features (topographic setting, geographical distribution); (d) such differences cannot be solely attributed to geological factors. The paper will end with a discussion of possible explanations for this dichotomy.
DOI: 10.6084/m9.figshare.27159378.v1
title: Ditched and walled enclosures in Prehistoric Iberia (4th-3rd millennia cal. BCE): Like oil and water_Jiménez-Jáimez et al._Supplementary Data

description: Iberian Copper Age “ditched” and “walled” enclosure sites are often thought to represent two clearly distinguishable groups of sites. However, the discovery of sites where both ditches and walls are present (“mixed sites”) complicates things. There are good reasons to question whether the aforementioned dichotomy is real, or if, instead, it is largely an artifact of research, resulting from a combination of poorly preserved archaeological contexts and inadequate survey strategies and methods which missed the potential integration of both building techniques at the same sites. This paper will address this problem from a Pan-Iberian perspective, as we will compare type-sites across multiple Iberian regions. We shall formulate and test seven relevant hypotheses by undertaking multiple comparative analyses at various scales on top of a purpose-built database including 345 sites. Among others, we will address questions such as: How frequent or rare are mixed sites? Is the perceived duality of the archaeological record (ditched versus walled) a by-product of preservation issues or the differential availability of certain building materials? Did walled and ditched enclosures really coexist in space and time? We conclude that: (a) Chalcolithic Iberian enclosures are markedly dichotomous (ditched vs walled); (b) “mixed” sites are rare exceptions rather than the rule; (c) walled and ditched enclosures show important differences in key features (topographic setting, geographical distribution); (d) such differences cannot be solely attributed to geological factors. The paper will end with a discussion of possible explanations for this dichotomy.
DOI: 10.5281/zenodo.14735518
title: The EFSA catalogues applied for the 2024 zoonoses data reporting

description: The EFSA catalogues applied for the 2024 zoonoses data reporting are made available in Excel format for easier use and reference.
description: EU; xlsx; zoonoses.support@efsa.europa.eu;
DOI: 10.5281/zenodo.14735519
title: The EFSA catalogues applied for the 2024 zoonoses data reporting

description: The EFSA catalogues applied for the 2024 zoonoses data reporting are made available in Excel format for easier use and reference.
description: EU; xlsx; zoonoses.support@efsa.europa.eu;
DOI: 10.6084/m9.figshare.28308743.v1
title: Data extracted from population genetic studies of riparian plants

description: In riparian zones along rivers, plant demography is shaped by hydrologic disturbances, the dendritic structure of the river networks, and asymmetric gene flow due to the prevalence of unidirectional dispersal by hydrochory. Downstream-biased dispersal may lead to the accumulation of genetic diversity in populations situated lower within the catchment area – a phenomenon referred to as ‘downstream increase in intraspecific genetic diversity’ (DIGD). Our study aimed to test if the presence of this pattern in riparian plants depends on the species traits, sampling design, and ecosystem integrity. We extracted data from population genetic studies of riparian plants to analyze factors linked to the pattern.