cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13908074.v1
title: Fig. 5: Thalamocortical evoked synaptic responses in freely behaving animals

description: (A) AAV-Chr2-mCherry viral expression targeted to dLGN projects to V1. Left, coronal slice showing viral expression in magenta. Right, visual cortex showing neuronal nuclei marked with NeuN and ChR2-mCherry in magenta. (B) Evoked fEPSPs recorded with a linear silicon array show clear layer-specific waveforms consistently with TC afferent location. (C) Current source density heat plot identifies layers; cool colors indicate current sink. (D) FEPSP latency to first negative peak identifies layers. Red circles represent latency of individual events; black line represents mean for each channel. (E) FEPSPs recorded over 3 days in a single freely behaving animal. Amplitude of the response plotted and colored by brain state. Dark periods (lights off) are represented by grey rectangles. (F) fEPSP waveforms by brain state, where each waveform is from a different animal; normalized to QW peak (indicated by dashed line) for each animal. Scale bar, 50% of peak amplitude, 10 ms. (G) FEPSP amplitudes across circadian time, normalized to quiet wake in the light period. N = 4 animals.
DOI: 10.6084/m9.figshare.13908110.v1
title: Fig 6: Stability of thalamocortical fEPSP amplitude during prolonged periods of sleep or wake

description: Time series data of thalamocortical evoked fEPSPs over the course of either sleep or wake dense epochs. (A) Example hypnograms showing wake (left) and sleep (right) dense epochs. Grey rectangles indicate times in which stimulations were analyzed for this example. (B) FEPSP amplitudes during sleep dense epochs, measured in NREM (as illustrated by box around hypnogram on left). Epochs passing the &gt;65% threshold are shown on left, and those passing the &gt;75% threshold are shown on right. FEPSP amplitude was normalized to the beginning of each epoch. Each dot is data from one epoch, averaged over 10 minute bins; n = 4 animals. Blue line = mean, shading = SEM, black dotted line = 1 (i.e. no change). (C) Same as (B) but for REM events. (D) Same as (B) but normalized fEPSP amplitude during wake, measured during active wake. (E) Same as (D) but for quiet wake events.
DOI: 10.6084/m9.figshare.13908128
title: Fig 6 – figure supplement 1: Stability of fEPSP slope during prolonged periods of sleep or wake

description: Time series data of thalamocortical evoked fEPSP slopes over the course of either sleep or wake dense epochs. (A) Hypnograms showing an example of a wake and sleep dense epoch. Black rectangles indicate example times in which stimulations were analyzed for this example. (B) FEPSP slopes during sleep dense epochs, measured in NREM (as illustrated by box around hypnogram on left). Epochs passing the &gt;65% threshold are shown on left, and those passing the &gt;75% threshold are shown on right. FEPSP slope was normalized to the beginning of each epoch. Each dot is data from one epoch, averaged over 10 minute bins; n = 4 animals. Blue line = mean, shading = SEM, black dotted line = 1 (i.e. no change). (C) Same as (B) but for REM events. (D) Same as (B) but normalized fEPSP slope during wake, measured during active wake. (E) Same as (D) but for quiet wake events.
DOI: 10.6084/m9.figshare.13908143
title: Fig 7: Thalamocortical fEPSP amplitude measured before and after prolonged periods of sleep or wake

description: (A) Hypnograms showing an example of a wake (left) and sleep (right) dense epoch, with flanking periods of the opposite state. Grey rectangles indicate when measurements were taken for comparison. (B) Example fEPSP waveforms before and after a wake (left) or sleep (right) dense epoch. (C) Normalized change in fEPSP amplitude after wake or sleep (wake change, p&gt;0.9; sleep change, p&gt;0.9; Wilcoxon signed-rank test). (D) Correlative plot of duration of wake dense epoch against normalized change in fEPSP amplitude. Black line = linear fit; R2 value and p value included on plot. Inset in top right is an expansion of plot between 0 and 3.5 hours. (E) Same as (D) but for sleep dense. N = 39 wake dense epochs, 55 sleep dense epochs, 4 animals.
DOI: 10.6084/m9.figshare.13908128.v1
title: Fig 6 – figure supplement 1: Stability of fEPSP slope during prolonged periods of sleep or wake

description: Time series data of thalamocortical evoked fEPSP slopes over the course of either sleep or wake dense epochs. (A) Hypnograms showing an example of a wake and sleep dense epoch. Black rectangles indicate example times in which stimulations were analyzed for this example. (B) FEPSP slopes during sleep dense epochs, measured in NREM (as illustrated by box around hypnogram on left). Epochs passing the &gt;65% threshold are shown on left, and those passing the &gt;75% threshold are shown on right. FEPSP slope was normalized to the beginning of each epoch. Each dot is data from one epoch, averaged over 10 minute bins; n = 4 animals. Blue line = mean, shading = SEM, black dotted line = 1 (i.e. no change). (C) Same as (B) but for REM events. (D) Same as (B) but normalized fEPSP slope during wake, measured during active wake. (E) Same as (D) but for quiet wake events.
DOI: 10.6084/m9.figshare.13908143.v1
title: Fig 7: Thalamocortical fEPSP amplitude measured before and after prolonged periods of sleep or wake

description: (A) Hypnograms showing an example of a wake (left) and sleep (right) dense epoch, with flanking periods of the opposite state. Grey rectangles indicate when measurements were taken for comparison. (B) Example fEPSP waveforms before and after a wake (left) or sleep (right) dense epoch. (C) Normalized change in fEPSP amplitude after wake or sleep (wake change, p&gt;0.9; sleep change, p&gt;0.9; Wilcoxon signed-rank test). (D) Correlative plot of duration of wake dense epoch against normalized change in fEPSP amplitude. Black line = linear fit; R2 value and p value included on plot. Inset in top right is an expansion of plot between 0 and 3.5 hours. (E) Same as (D) but for sleep dense. N = 39 wake dense epochs, 55 sleep dense epochs, 4 animals.
DOI: 10.6084/m9.figshare.13908158
title: Fig 8: Characterization of thalamocortical evoked spiking in visual cortex between behavioral states and its stability across sleep and wake

description: (A) Heat plot response of the firing rate of each cell isolated during stimulation. Data are grouped by layer, and sorted by the magnitude of response within each layer. N = 45 cells, 4 animals. (B) Evoked spikes per stimulation for each of the 4 vigilance states. The y axis represents the average number of evoked spikes for a single stimulation, calculated as spikes in a 15 ms post stimulus window, minus the expected number of baseline spikes in that window; each dot represents a cell. Evoked spikes varied significantly by vigilance state (AW-QW, p=3.4e-4; AW-NREM, p=6.56e-4; AW-REM, p=4.70e-4; QW-NREM, p=0.0022; QW-REM, p=0.0122; NREM-REM, p=0.0380). (C) To determine whether evoked spike rates were affected by time spent awake or asleep, we compared evoked spiking before and after a sleep or wake dense epoch, using a &gt;75% time in state threshold, as for fEPSPs in Figure 7. Hypnograms show examples of wake or sleep dense epochs with flanking periods of the opposite state. Gray rectangles indicate the stimulation times chosen for the analysis. (D) example raster plots and post-stimulus time histograms of firing rate for an example cell pre-post sleep. (E) Shows the number of evoked spikes before and after wake (left) or sleep (right) dense epochs; each dot is one cell, averaged across all of the wake or sleep dense epochs (wake dense n = 32 cells, 4 animals; sleep dense n = 24 cells, 4 animals). (F) Correlative plot of duration of wake dense epoch against change in evoked spikes; each dot represents the response of a single cell to a single epoch (post – pre). Black line = linear fit; R2 value and p value included on plot. Inset is an expansion of plot between 0.25-3.5 hours. (G) Same as (F) but for sleep dense epochs. N = 35 wake dense epochs, 50 sleep dense epochs, 4 animals.
DOI: 10.15468/e3m6zy
title: A new species of Nidirana from the N. pleuraden group (Anura, Ranidae) from western Yunnan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lyu, Zhi-Tong, Chen, Yang, Yang, Jian-Huan, Zeng, Zhao-Chi, Wang, Jian, Zhao, Jian, Wan, Han, Pang, Hong, Wang, Ying-Yong (2020): A new species of Nidirana from the N. pleuraden group (Anura, Ranidae) from western Yunnan, China. Zootaxa 4861 (1): 43-62, DOI: https://doi.org/10.11646/zootaxa.4861.1.3
DOI: 10.25398/rd.northumbria.13902737
title: Database of Results. V&A cast of a font (REPRO1874-29)

description: Collection of results of analyses carried on the V&A cast a font (REPRO.1874-29).Sampling, OM-BSE, Summary and Samples 1 to 6 (OM, SEM-EDS, XRD, FT-IR, GC/MS). Raw data available upon request.
DOI: 10.25398/rd.northumbria.13902737.v1
title: Database of Results. V&A cast of a font (REPRO1874-29)

description: Collection of results of analyses carried on the V&A cast a font (REPRO.1874-29).Sampling, OM-BSE, Summary and Samples 1 to 6 (OM, SEM-EDS, XRD, FT-IR, GC/MS). Raw data available upon request.
DOI: 10.6084/m9.figshare.13908011
title: Fig 3 – figure supplement 2: Sleep/wake histories for additional ex vivo slice recordings

description: Each experiment includes an example hypnogram from one animal above summary data of wake history. (A) Animals from visual cortex L4 recordings. Top figure, example hypnogram from a single animal. Green bars indicate instances of wake, magenta indicates REM, and blue NREM. Below, this same behavioral state data is represented as a moving average of % time spent awake in the preceding 4 hr but for each animal included in the experiment; the dashed lines represent the thresholds for achieving the required density in a given state, and the dots represent endpoints for slice recordings. Black circle around end point dot indicates which trace is represented by example hypnogram. (B) Same as (A) but for wake dense recordings (with green dots). (C-D) Same as (A-B) but for prefrontal cortex L2/3 recordings. (E) Same as (D) but for the D. wake dense recordings (i.e. sacrifice occurred in the dark period).
DOI: 10.6084/m9.figshare.13908309
title: Supplementary Table 3: Statistical comparison. Evidence from the U–Pb–Hf signatures of detrital zircons for a Baltican provenance for basal Old Red Sandstone successions, northern Scottish Caledonides

description: Supplementary Table 3: Statistical comparison of Lower ORS samples against samples of the Dalradian Supergroup. Age only comparison KS test, including uncertainty in age measurement.
DOI: 10.6084/m9.figshare.13908309.v1
title: Supplementary Table 3: Statistical comparison. Evidence from the U–Pb–Hf signatures of detrital zircons for a Baltican provenance for basal Old Red Sandstone successions, northern Scottish Caledonides

description: Supplementary Table 3: Statistical comparison of Lower ORS samples against samples of the Dalradian Supergroup. Age only comparison KS test, including uncertainty in age measurement.
DOI: 10.6084/m9.figshare.13908110
title: Fig 6: Stability of thalamocortical fEPSP amplitude during prolonged periods of sleep or wake

description: Time series data of thalamocortical evoked fEPSPs over the course of either sleep or wake dense epochs. (A) Example hypnograms showing wake (left) and sleep (right) dense epochs. Grey rectangles indicate times in which stimulations were analyzed for this example. (B) FEPSP amplitudes during sleep dense epochs, measured in NREM (as illustrated by box around hypnogram on left). Epochs passing the &gt;65% threshold are shown on left, and those passing the &gt;75% threshold are shown on right. FEPSP amplitude was normalized to the beginning of each epoch. Each dot is data from one epoch, averaged over 10 minute bins; n = 4 animals. Blue line = mean, shading = SEM, black dotted line = 1 (i.e. no change). (C) Same as (B) but for REM events. (D) Same as (B) but normalized fEPSP amplitude during wake, measured during active wake. (E) Same as (D) but for quiet wake events.
DOI: 10.6084/m9.figshare.13908312
title: Supplementary Table 1: Standards. Evidence from the U–Pb–Hf signatures of detrital zircons for a Baltican provenance for basal Old Red Sandstone successions, northern Scottish Caledonides

description: Supplementary Table 1: U–Pb and Hf isotopic standard data for the new Lower Old Red Sandstone samples.
DOI: 10.6084/m9.figshare.13908312.v1
title: Supplementary Table 1: Standards. Evidence from the U–Pb–Hf signatures of detrital zircons for a Baltican provenance for basal Old Red Sandstone successions, northern Scottish Caledonides

description: Supplementary Table 1: U–Pb and Hf isotopic standard data for the new Lower Old Red Sandstone samples.
DOI: 10.6084/m9.figshare.13908158.v1
title: Fig 8: Characterization of thalamocortical evoked spiking in visual cortex between behavioral states and its stability across sleep and wake

description: (A) Heat plot response of the firing rate of each cell isolated during stimulation. Data are grouped by layer, and sorted by the magnitude of response within each layer. N = 45 cells, 4 animals. (B) Evoked spikes per stimulation for each of the 4 vigilance states. The y axis represents the average number of evoked spikes for a single stimulation, calculated as spikes in a 15 ms post stimulus window, minus the expected number of baseline spikes in that window; each dot represents a cell. Evoked spikes varied significantly by vigilance state (AW-QW, p=3.4e-4; AW-NREM, p=6.56e-4; AW-REM, p=4.70e-4; QW-NREM, p=0.0022; QW-REM, p=0.0122; NREM-REM, p=0.0380). (C) To determine whether evoked spike rates were affected by time spent awake or asleep, we compared evoked spiking before and after a sleep or wake dense epoch, using a &gt;75% time in state threshold, as for fEPSPs in Figure 7. Hypnograms show examples of wake or sleep dense epochs with flanking periods of the opposite state. Gray rectangles indicate the stimulation times chosen for the analysis. (D) example raster plots and post-stimulus time histograms of firing rate for an example cell pre-post sleep. (E) Shows the number of evoked spikes before and after wake (left) or sleep (right) dense epochs; each dot is one cell, averaged across all of the wake or sleep dense epochs (wake dense n = 32 cells, 4 animals; sleep dense n = 24 cells, 4 animals). (F) Correlative plot of duration of wake dense epoch against change in evoked spikes; each dot represents the response of a single cell to a single epoch (post – pre). Black line = linear fit; R2 value and p value included on plot. Inset is an expansion of plot between 0.25-3.5 hours. (G) Same as (F) but for sleep dense epochs. N = 35 wake dense epochs, 50 sleep dense epochs, 4 animals.
DOI: 10.6084/m9.figshare.13908318.v1
title: Supplementary Table 2: Compendium of U–Pb and Hf isotopic data. Evidence from the U–Pb–Hf signatures of detrital zircons for a Baltican provenance for basal Old Red Sandstone successions, northern Scottish Caledonides

description: Supplementary Table 2: Compendium of U–Pb and Hf isotopic data for new Lower Old Red Sandstone analyses. For interpretation of genesis: D = discordant, S = detrital, Y = youngest detrital.
DOI: 10.6084/m9.figshare.13908318
title: Supplementary Table 2: Compendium of U–Pb and Hf isotopic data. Evidence from the U–Pb–Hf signatures of detrital zircons for a Baltican provenance for basal Old Red Sandstone successions, northern Scottish Caledonides

description: Supplementary Table 2: Compendium of U–Pb and Hf isotopic data for new Lower Old Red Sandstone analyses. For interpretation of genesis: D = discordant, S = detrital, Y = youngest detrital.
DOI: 10.15468/gkbmvt
title: Taxonomic assessment of the inquiline fauna (Hymenoptera: Cynipidae Synergini, Ceroptresini) reared from cynipid galls on oaks (Quercus spp.) from South Korea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lobato-Vila, Irene, Kang, Minjoon, Roca-Cusachs, Marcos, Kim, Ilkwon, Jung, Sunghoon, Pujade-Villar, Juli (2020): Taxonomic assessment of the inquiline fauna (Hymenoptera: Cynipidae Synergini, Ceroptresini) reared from cynipid galls on oaks (Quercus spp.) from South Korea. Zootaxa 4860 (2): 179-198, DOI: https://doi.org/10.11646/zootaxa.4860.2.2
DOI: 10.6084/m9.figshare.13908632
title: BTCUSDnews_Azadeh_Label.csv

description: Emotion analysis is one of the research fields in the field of natural language processing. In this project, the aim is to analyze the feeling of financial news documents. In fact, the problem is a multi-part classification of the text, so that the trained model receives a text as input and returns the feeling of the document as output as three positive, negative or neutral labels.
DOI: 10.6084/m9.figshare.13908632.v1
title: BTCUSDnews_Azadeh_Label.csv

description: Emotion analysis is one of the research fields in the field of natural language processing. In this project, the aim is to analyze the feeling of financial news documents. In fact, the problem is a multi-part classification of the text, so that the trained model receives a text as input and returns the feeling of the document as output as three positive, negative or neutral labels.
DOI: 10.5281/zenodo.4534252
title: Supporting molecular data for High rate nanofluidic energy absorption in porous zeolitic frameworks

description: Supplementary data containing relevant structural information for the manuscript 'High rate nanofluidic energy absorption in porous zeolitic frameworks'. This repository contains the optimized ZIF-8 structure relevant structures of the force-field MD simulations of water intrusion in ZIF-8, containing at least the initial and final configurations relevant structures of the ab initio MD simulations of the swing angle distribution in ZIF-8, containing the initial and final configurations Please also refer to https://github.com/SvenRogge/supporting-info for additional input scripts to reproduce these results.
DOI: 10.5281/zenodo.4534251
title: Supporting molecular data for High rate nanofluidic energy absorption in porous zeolitic frameworks

description: Supplementary data containing relevant structural information for the manuscript 'High rate nanofluidic energy absorption in porous zeolitic frameworks'. This repository contains the optimized ZIF-8 structure relevant structures of the force-field MD simulations of water intrusion in ZIF-8, containing at least the initial and final configurations relevant structures of the ab initio MD simulations of the swing angle distribution in ZIF-8, containing the initial and final configurations Please also refer to https://github.com/SvenRogge/supporting-info for additional input scripts to reproduce these results.
DOI: 10.6084/m9.figshare.13908770.v1
title: Prueba 1

description: dfgdgfdfghjkhjk
DOI: 10.6084/m9.figshare.13908770
title: Prueba 1

description: dfgdgfdfghjkhjk
DOI: 10.17632/j4cpcr4wc3.1
title: Human Intravenous Immunoglobulin Alleviates Neuropathic Symptoms in a Rat Model of Paclitaxel-Induced Peripheral Neurotoxicity
DOI: 10.7284/139120
title: Multibeam Echosounder data collected during research cruise AR47 using a Kongsberg EM710 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.13135/ela-330
title: Honours for a priest (of Asklepios?)
DOI: 10.5517/ccdc.csd.cc25qwg8
title: CCDC 2017990: Experimental Crystal Structure Determination

description: Related Article: Y. Liu, L. Chen, J. Wang, J. Chen, J. Wang, H. Pan|2021|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|77|150|doi:10.1107/S2052520620015371
DOI: 10.5281/zenodo.4534445
title: Wikidata Dump 27-04-2015 Fixed Syntax Errors

description: This is the version of 27 April 2015 turtle dump with no syntax errors.
DOI: 10.5281/zenodo.4534444
title: Wikidata Dump 27-04-2015 Fixed Syntax Errors

description: This is the version of 27 April 2015 turtle dump with no syntax errors.
DOI: 10.25345/c5jn5x
title: MassIVE MSV000086840 - From ELISA to immunosorbent tandem mass spectrometry proteoform analysis (ISTAMPA): the example of CXCL8/interleukin-8
title: Detection of CXCL8 proteoforms by immunosorbent tandem mass spectrometry proteoform analysis
DOI: 10.6084/m9.figshare.13909319
title: Spicoid morphology of Mapanioideae (Cyperaceae): an evolutionary perspective

description: Ancestral character reconstruction was performed using<b> </b>the Bayesian Inference molecular phylogenetic hypothesis of Cyperaceae from<b> </b>Semmouri et al. (2019) restricted to Mapanioideae species. Cyperaceae inflorescences were previously classified based on the typology of the inflorescence architecture found in Cyperaceae. This resulted in the “scirpoid”, “cyperoid”, “rhynchosporoid” and “caricoid” type of spikelets proposed by Dahlgren et al. (1985). However, we believe that considering a typological classification for the spicoid morphology may hamper elucidating the evolution of its morphological variation, since typologies represent a combination of several characters that can be shared by different types. Therefore, instead of evaluating it as a single unit, the spicoid morphology was tackled in a reductive coding through an iterative process of decomposition. A similar approach was successfully used by Semmouri et al. (2019) to study the evolution of embryo morphology in Cyperaceae. Spicoid morphology was initially partitioned into eight characters: 1. presence/absence of subtending bract; 2. number of lateral scales; 3. presence/absence of keel in the lateral scales; 4. number of lateral stamens, 5. number of inner scales, 6. number of inner stamens; 7. position of the pistil; 8. Pistil merosity (related to the number of stigmas branches). From these characters, five were shown to be variable, potentially phylogenetically informative, and therefore selected for downstream comparative analyses. The variable characters are: 1. The presence of keels on the lateral scales (a: present, b: absent); 2. Number of lateral stamens (a: 0, b: 2); 3. Number of inner scales (a: 0, b: 1-6, c: 7-12, d: 13-19, e: &gt;19); 4. Number of inner stamens (a: 0, b: 1-6, c: 7-14, d: &gt;14); 5. Pistil merosity (a: dimerous, b: trimerous). The coding arrangements were performed to optimize the character reconstruction analyses. The parameter “type=discrete” was used since the morphological features were coded as discrete. Bayesian stochastic character (BSC) mapping (Huelsenbeck et al., 2018) was performed using the ‘make.simmap’ function available in phytools v0.5–64 (Revell, 2012). The analyses were implemented in R (R Core Team, 2018) using the model that best fits to the data (“equal rates” or “all rates different”) to recover the evolutionary history of the morphological characters under investigation and recover ancestral character state probabilities at the nodes. Outgroups, terminals with more than one accession per taxon and polytomies were removed from the analysis using the function ‘drop.tip’ in ape (Paradis et al., 2004) to prevent bias in character state reconstruction. Stochastic character mapping was performed using 1000 simulations. BSC provided transition rates which were used to build a transition matrix among features as input to the heatmaps depicted using pheatmap v1.0.12.