cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0092647.10fu
title: SH0092647.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive100612.20230509.8.1
title: Kurthia gibsonii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive100612.20251217.10
title: Kurthia gibsonii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0092648.10fu
title: SH0092648.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive100613.20230509.8.1
title: Cupriavidus necator

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive100613.20251217.10
title: Cupriavidus necator

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0092649.10fu
title: SH0092649.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive100614.20241212.9.2
title: Delftia acidovorans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0092650.10fu
title: SH0092650.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive100614.20251217.10
title: Delftia acidovorans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive100615.20230509.8.1
title: Brevundimonas diminuta

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0092651.10fu
title: SH0092651.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.ken987
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Halogeton arachnoideus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077295-251120083545085/datasets/export for details.
DOI: 10.15468/dl.zqnsbz
title: Occurrence Download

description: A dataset containing 1775 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "TaxonKey is Agapanthus praecox Willd."
 ]
}

 The dataset includes 1775 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011249-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.maguyf
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is DATAVES",
 "TaxonKey is Rallus semiplumbeus P.L.Sclater, 1856"
 ]
}

 The dataset includes 81 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011250-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18150/bxq6mu
title: Archiwalia do dziejów litewskiej prowincji bazylianów z zasobu: Sankt Petersburski Instytut Historii Rosyjskiej Akademii Nauk. Sankt Petersburg, Zespół nr 52, kolekcja Pawła Dobrochotowa, opis 1 (część 1)

description: Plik zawiera opisy archiwaliów i linki do rękopiśmiennych źródeł archiwalnych
DOI: 10.6084/m9.figshare.28603841
title: Isotopic data for: <b>Reconstructing the last foraging decisions of an iconic jaguar illuminates the sources of human-wildlife conflicts.</b>

description: Isotopic data for: <b>Reconstructing the last foraging decisions of an iconic jaguar illuminates the sources of human-wildlife conflicts.</b><br><b>Abstract</b>Human-wildlife conflicts led to the death of Máscara, one of the last jaguars in the fragmented landscapes of the Atlantic Forest. Stable isotope (δ13C and δ15N) analyses of his whiskers revealed a predominant reliance on native prey (76%) but with periods of increased domestic prey predation. This challenges the narrative of jaguars as livestock specialists within periods of jaguar-human conflicts. Instead, results highlight the jaguar´s trophic flexibility and preference for native prey. These findings emphasize the critical need for conservation strategies that integrate prey availability, jaguar behavior, and conflict mitigation to ensure coexistence in fragmented landscapes.<br><br>
DOI: 10.6084/m9.figshare.28603841.v1
title: Isotopic data for: <b>Reconstructing the last foraging decisions of an iconic jaguar illuminates the sources of human-wildlife conflicts.</b>

description: Isotopic data for: <b>Reconstructing the last foraging decisions of an iconic jaguar illuminates the sources of human-wildlife conflicts.</b><br><b>Abstract</b>Human-wildlife conflicts led to the death of Máscara, one of the last jaguars in the fragmented landscapes of the Atlantic Forest. Stable isotope (δ13C and δ15N) analyses of his whiskers revealed a predominant reliance on native prey (76%) but with periods of increased domestic prey predation. This challenges the narrative of jaguars as livestock specialists within periods of jaguar-human conflicts. Instead, results highlight the jaguar´s trophic flexibility and preference for native prey. These findings emphasize the critical need for conservation strategies that integrate prey availability, jaguar behavior, and conflict mitigation to ensure coexistence in fragmented landscapes.<br><br>
DOI: 10.15468/dl.ju3gqr
title: Occurrence Download

description: A dataset containing 29177 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Armillaria mellea (Vahl) P.Kumm."
 ]
}

 The dataset includes 29177 records from 451 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011252-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8c7uds
title: Occurrence Download

description: A dataset containing 1114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Frankliniella schultzei (Trybom, 1910)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1114 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011253-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18150/zwhndx
title: «Книга глаголемая суботникъ»: памяннікі цэркваў і манастыроў Вялікага Княства Літоўскага XVII-XVIII стст.

description: Prezentacja zawierająca tekst i ilustracje ksiąg gromadzonych w parafiach cerkiewnych i klasztornych zawierających wpisy osób oraz zaprezentowane w formie tabel analizy odnoszące się do tzw. głębi pamięci.
DOI: 10.15468/dl.w2vadw
title: Occurrence Download

description: A dataset containing 387206 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "CoordinateUncertaintyInMeters 0.0-1060.0",
 {
 "or" : [
 "Geometry POLYGON((-94.63085 45.99233,-94.60833 45.99796,-94.62522 46.00922,-94.63085 45.99233))",
 "Geometry POLYGON((-95.23439 46.24618,-95.28625 44.43477,-92.46727 44.39773,-92.22279 45.96095,-95.23439 46.24618))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 387206 records from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011248-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4f49f
title: Occurrence Download

description: A dataset containing 33916677 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Chinese Taipei, Hong Kong, China, Macao)",
 "Year 1000-2025"
 ]
}

 The dataset includes 33916677 records from 4492 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011222-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qxsj97
title: Occurrence Download

description: A dataset containing 33167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centaurea aspera L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 33167 records from 357 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077048-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vpumst
title: Occurrence Download

description: A dataset containing 1027 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Selaginella tamariscina (P.Beauv.) Spring",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1027 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050307-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d38m67
title: Occurrence Download

description: A dataset containing 138632 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centaurea cyanus L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 138632 records from 1026 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077102-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ap8qx3
title: Occurrence Download

description: A dataset containing 624 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Canada",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Allium schoenoprasum L."
 ]
}

 The dataset includes 624 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0384230-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u33rxf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "ScientificName" : [
 "is one of (Stercorarius maccormicki)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043738-240506114902167/datasets/export for details.
DOI: 10.15468/dl.zqwvlj
title: Occurrence Download

description: A dataset containing 86258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echinochloa crus-galli (L.) P.Beauv.",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 86258 records from 422 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050308-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/aeg-wne-c6e
title: Antimony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qke-qv8-dgn
title: Antimony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28608260.v1
title: sentence and clause length distribution

description: The present study aims to employ the probabilistic distribution of sentence and clause lengths to distinguish translation directionality. Specifically, it addresses three research questions: (1) whether sentence length probability distributions can better discriminate translation directions than average sentence length, (2) whether clause length probability distributions can better discriminate translation directions than average clause length, and (3) which distributional pattern, rank-frequency (R-F) or length-frequency (L-F), is more sensitive to translation direction. Analysis reveals that mean sentence and clause lengths are unreliable metrics for distinguishing translation directions. In contrast, the parameters of the sentence length L-F distribution, fitted as the Extended Positive Negative Binomial (EPNB) model (<i>k</i>, <i>p</i>), and those of the clause length R-F distribution, fitted as the Hyperpoisson model (<i>a</i>, <i>b</i>), exhibit strong discriminative power for translation directionality. The findings demonstrate that probabilistic distributional patterns can better capture and characterize the nuanced linguistic features of translated texts than simple mean values. The study highlights the effectiveness of the data-driven, probabilistic and quantitative linguistic approach in analyzing the sophisticated translation phenomena.
DOI: 10.6084/m9.figshare.4750621.v1
title: Molecular simulations of entangled defect structures around nanoparticles in nematic liquid crystals

description: We investigate the defect structures forming around two nanoparticles in a Gay–Berne nematic liquid crystal using molecular simulations. For small separations, disclinations entangle both particles forming the figure of eight, the figure of omega and the figure of theta. These defect structures are similar in shape and occur with a comparable frequency to micron-sized particles studied in experiments. The simulations reveal fast transitions from one defect structure to another suggesting that particles of nanometre size cannot be bound together effectively. We identify the ‘three-ring’ structure observed in previous molecular simulations as a superposition of the different entangled and non-entangled states over time and conclude that it is not itself a stable defect structure.
DOI: 10.15468/dl.bkna26
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tagetes erecta L.",
 "Year 1970-2025"
 ]
}

 The dataset includes 207 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009676-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/5yx-6ch-qdj
title: Chondrodite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/94j-1n1-3ve
title: Chondrodite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26942338.v1
title: Marine Biofilm Bank with 713 Culturable Strains and Their Genomes

description: In this study, we construct a bank of culturable marine biofilm bacteria constituting 713 strains and their nearly complete genomes.
DOI: 10.6084/m9.figshare.28405655.v1
title: Data for: Recombination and retroprocessing in broomrapes reveal a universal roadmap for mitochondrial evolution in heterotrophic plants

description: This repository contains Supplementary data for: "Recombination and retroprocessing in broomrapes reveal a universal roadmap for mitochondrial evolution in heterotrophic plants. L., Cai., J.C., Havird, R.K., Jansen." It contains the genome assemblies, annotations, gene alignments, and phylogenies supporting the findings of this study including RNA editing, molecular evolution, and gene transfers.
DOI: 10.3535/lk9-9ht-r5y
title: Chondrodite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nd8-7sc-p2t
title: Antimony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14211281.v1
title: mBio_Wang_etal_2020_supplement_TableS13

description: <b>Supplemental Table S13. Gene ontology (GO) terms associated with linear modeled genes in the 21 <i>C. albicans </i>isolates. </b>Each tab identifies the phenotype and GO category (component, function, or process) for each comparison made with significant enrichment of GO terms. The columns of each page include “GO term”, “Cluster frequency” to indicate the number of genes within the GO term among the 2036 identically expressed genes, “background Frequency” to indicate the total number of 6473 annotated genes in the <i>C. albicans </i>genome assigned to that GO term, “Corrected p-value” “False Discovery Rate”, and “Genes annotated to the term” to define the genes that contribute to the “Cluster Frequency” column.
DOI: 10.6084/m9.figshare.25472434.v2
title: EPI-Clone dataset M.7: Native hematopoiesis, old and young mouse

description: This is a dataset supporting the EPI-Clone manuscript: Targeted single cell methylation profiling of hematopoietic stem and progenitor cells (HSPCs) was performed with the scTAMseq method. Two experiments are included: HSPCs from a young mouse (12 weeks) and from a old mouse (100 weeks). Dataset is a seurat (v4) object with the following assays, reductions and metadata:  <br><b>ASSAYS</b>: DNAm: DNA methylation data, containing binary observations (0: amplicon not observed, i.e. dropout or absence of DNA methylation, 1: amplicon observed, i.e. DNA methylation). See the paper on scTAMseq <b>DIMENSIONALITY REDUCTION</b><b> </b>pca: PCA performed on the DNAm data umap: UMAP computed on the DNAm data <b>METADATA</b> Sample: The experiment that the cell is from, values are "Old" for the 100-wk mouse and “Young” for the 12-wk mouse CellType: Cell type annotation Pseudotime: Differentiation pseudotime PerformanceNonHhaI: Performance of the control amplicons in that cell TotalCounts: Number of reads on the Non-HhaI control amplicons
DOI: 10.3535/9yh-6gn-hdy
title: Antimony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/slf-4t4-4wp
title: Chondrodite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.