cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17575248
title: Obscuration of Crystalline Ca-Sulfate in XRD And Raman Data when Coated by Amorphous Ferric Sulfate: Implications for the Amorphous Components at Gale Crater

description: Raman Data: There are 5 data files in txt format that contain several Raman spectra of the samples studied in the associated journal article. These five file names are listed below.

·       AFS Raman.txt: Raman spectra of the pure amorphous ferric sulfate (AFS).

·       Gypsum Raman.txt: Raman spectra of 25-63 µm gypsum.

·       Mikasaite Raman.txt: Raman spectra of Mikasaite

·       Coated Gyp-AFS Raman.txt: 50-50 wt% mixture of AFS and gypsum, with the AFS coating the gypsum.

·       Uncoated Gyp-Raman.txt: 50-50 wt% mixture of AFS and gypsum, with the AFS and gypsum in separate discrete grains.

File Structure: Each txt file for each sample contains 5 spectra. Below is a guide to each column in the files

·       Column 1: Raman Shift (1/cm)

·       Column 2: Raw uncorrected spectra

·       Column 3: Baseline

·       Column 4: Baseline-Corrected spectra

·       Column 5: Normalized Baseline-Corrected spectra, with offset shown in Figure 1.

 

XRD Data: The raw diffraction data of both the coated and uncoated Gyp-AFS mixtures from both XRD instruments are available. The file names are listed below, with descriptions

·       50-50_gyp-AFS_Coated_DS_XRD.txt

·       50-50_gyp-AFS_Uncoated_DS_XRD.txt

·       Gyp-AFS-Coated_BB_XRD.ras

·       Gyp-AFS-Uncoated_BB_XRD.ras

The two files ending with ‘.txt’ with ‘DS’ in the file name contain diffraction data taken with the Olympus BTX XRD instrument. The two files ending with ‘.ras’ with ‘BB’ in the file name contain diffraction data taken with the Rigaku Miniflex XRD. 

SEM/EDS Data: There are 13 SEM images available in high-resolution of both the uncoated and coated Gyp-AFS samples. The file name states that whether the sample is coated or uncoated. The scale bar and scan information is at the bottom of each SEM images. Additionally, a word document 'Gyp-AFS SEM-EDS Full.docx' holds all of the full EDS analyses of each image, with spot spectra and line scans.
DOI: 10.15468/dl.5f8fqx
title: Occurrence Download

description: A dataset containing 470 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((117.621 6.162136, 117.550332 6.156565, 117.481409 6.13999, 117.41593 6.112819, 117.355512 6.075724, 117.301644 6.029619, 117.255653 5.975642, 117.218671 5.915124, 117.191605 5.849557, 117.17512 5.780557, 117.169618 5.709823, 117.175229 5.639098, 117.191813 5.570122, 117.218957 5.504593, 117.25599 5.444124, 117.301998 5.3902, 117.355849 5.344149, 117.416216 5.307102, 117.481616 5.27997, 117.550441 5.263419, 117.621 5.257857, 117.691559 5.263419, 117.760384 5.27997, 117.825784 5.307102, 117.886151 5.344149, 117.940002 5.3902, 117.98601 5.444124, 118.023043 5.504593, 118.050187 5.570122, 118.066771 5.639098, 118.072382 5.709823, 118.06688 5.780557, 118.050395 5.849557, 118.023329 5.915124, 117.986347 5.975642, 117.940356 6.029619, 117.886488 6.075724, 117.82607 6.112819, 117.760591 6.13999, 117.691668 6.156565, 117.621 6.162136))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 470 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007775-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nymneu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((89.025012 23.940898, 88.94817999999999 23.935322, 88.87326 23.918729, 88.80211300000001 23.891535, 88.736504 23.854414, 88.678059 23.808288, 88.628218 23.754301, 88.588206 23.693793, 88.558999 23.628259, 88.541302 23.559321, 88.535534 23.488679, 88.54181699999999 23.418074, 88.559979 23.349244, 88.589555 23.283878, 88.629803 23.22358, 88.679726 23.169827, 88.73809 23.123934, 88.803461 23.087024, 88.87424 23.059996, 88.948696 23.043511, 89.025012 23.037971, 89.101328 23.043511, 89.17578399999999 23.059996, 89.24656299999999 23.087024, 89.31193399999999 23.123934, 89.37029800000001 23.169827, 89.420221 23.22358, 89.460469 23.283878, 89.49004499999999 23.349244, 89.508207 23.418074, 89.51449 23.488679, 89.50872200000001 23.559321, 89.49102499999999 23.628259, 89.46181799999999 23.693793, 89.421806 23.754301, 89.371965 23.808288, 89.31352 23.854414, 89.247911 23.891535, 89.17676400000001 23.918729, 89.101844 23.935322, 89.025012 23.940898))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007776-260120142942310/datasets/export for details.
DOI: 10.15468/dl.r38u5d
title: Occurrence Download

description: A dataset containing 36831 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sarcophilus harrisii"
 ]
}

 The dataset includes 36831 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007777-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u65psm
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gymnoscopelus nicholsi",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 10",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 66 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007778-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwrdft
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cannaboides betsileensis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 21 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007779-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gyerna
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dunckerocampus naia"
 ]
}

 The dataset includes 37 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007780-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15558696
title: Identification of Content in the Literature for Teaching Units of Syllabus for the Software Project Management Subject in Undergraduate Computing Courses
DOI: 10.5281/zenodo.15558697
title: Identification of Content in the Literature for Teaching Units of Syllabus for the Software Project Management Subject in Undergraduate Computing Courses
DOI: 10.15468/dl.durvgq
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epipremnum pinnatum (L.) Engl.",
 "Country is Viet Nam"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010748-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uhwz29
title: Occurrence Download

description: A dataset containing 1128305 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Limosa limosa (Linnaeus, 1758)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1128305 records from 853 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009940-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.2280gb5ps
title: Data from: Climatic drivers of latitudinal variation in Late Triassic tetrapod diversity

description: The latitudinal biodiversity gradient (LBG), the increase in biodiversity
 from the poles to the equator, is one of the most widely recognised global
 macroecological patterns, yet its deep time evolution and drivers remain
 uncertain. The Late Triassic (237–201 million years ago), a critical
 interval for the early evolution and radiation of modern tetrapod groups
 (e.g. crocodylomorphs, dinosaurs, mammaliamorphs), offers a unique
 opportunity to explore the palaeolatitudinal patterns of tetrapod
 diversity since it is extensively sampled spatially when compared with
 other pre-Cenozoic intervals, particularly at lower palaeolatitudes. Here,
 we explore palaeolatitudinal patterns of Late Triassic tetrapod diversity
 by applying sampling standardisation to comprehensive occurrence data from
 the Paleobiology Database. We then use palaeoclimatic model simulations to
 explore the palaeoclimatic ranges occupied by major tetrapod groups,
 allowing insight into the influence of palaeoclimate on the
 palaeolatitudinal distribution of these groups. Our results show that Late
 Triassic tetrapods generally do not conform to a modern-type LBG; instead,
 sampling-standardised species richness is highest at mid-palaeolatitudes.
 In contrast, the richness of pseudosuchians (crocodylians and their
 relatives) is highest at the palaeoequator, a pattern that is retained
 throughout their subsequent evolutionary history. Pseudosuchians generally
 occupied a more restricted range of palaeoclimatic conditions than other
 tetrapod groups, a condition analogous to modern day reptilian ectotherms,
 while avemetatarsalians (the archosaur group containing dinosaurs and
 pterosaurs) exhibit comparatively wider ranges, which is more similar to
 modern endotherms, such as birds and mammals, suggesting important
 implications for the evolution of thermal physiology in dinosaurs.
description: <strong>Supplementary material &
 data</strong> <strong>Additional figures
 and tables:</strong> Supplementary_material.pdf
 <strong>Data file:</strong>
 Late_Triassic_tetrapod_occurrences_cleaned.csv Code for 'cleaning'
 datasets downloaded from the Paleobiology Database such as the one used in
 this study (cleaning_code.R). This code and example datasets are
 also available at: github.com/emmadunne/pbdb_cleaning
DOI: 10.5061/dryad.7h44j0zrz
title: Female-biased sex allocation and lack of inbreeding avoidance in Cubitermes termites

description: Sexually-reproducing organisms face a strong selective pressure to find a
 mate and ensure reproduction. An important criterion during mate-selection
 is to avoid closely-related individuals and subsequent potential fitness
 costs of resulting inbred offspring. Inbreeding avoidance can be active
 through kin recognition during mate choice, or passive through
 differential male and female-biased sex ratios, which effectively prevents
 sib-mating. In addition, sex allocation, or the resources allotted to male
 and female offspring, can impact mating and reproductive success. Here, we
 investigate mate choice, sex ratios, and sex allocation in dispersing
 reproductives (alates) from colonies of the termite Cubitermes tenuiceps.
 Termites have a short time to select a mate for life, which should
 intensify any fitness consequences of inbreeding. However, alates did not
 actively avoid inbreeding through mate choice via kin recognition based on
 genetic or environmental cues. Furthermore, the majority of colonies
 exhibited a female-biased sex ratio, and none exhibited a male-bias,
 indicating that differential bias does not reduce inbreeding. Sex
 allocation was generally female-biased, as females also were heavier, but
 the potential fitness effect of this costly strategy remains unclear. The
 bacterium Wolbachia, known in other insects to parasitically distort sex
 allocation toward females, was present within all alates. While Wolbachia
 is commonly associated with termites, parasitism has yet to be
 demonstrated, warranting further study of the nature of the symbiosis.
 Both the apparent lack of inbreeding avoidance and potential maladaptive
 sex allocation implies possible negative effects on mating and fitness.
DOI: 10.5061/dryad.9kd51c5f1
title: Effects of habitat transitions on rainforest bird communities across an anthropogenic landscape mosaic

description: We compared bird community responses to the habitat transitions of:
 rainforest-to-pasture conversion, consequent habitat fragmentation, and
 post-agricultural regeneration, across a landscape mosaic of about 600
 km2 in the eastern Australian subtropics. Birds were surveyed in
 seven habitats: continuous mature rainforest; two size-classes of mature
 rainforest fragment (4-21 ha, 1-3 ha); regrowth forest patches dominated
 by a non-native tree (2-20 ha, 30-50 years old); two types of isolated
 mature trees in pasture; and treeless pasture; with six sites per habitat.
 We compared the avifauna among habitats, and among sites, at the levels of
 species, functional guilds, and community-wide. Community-wide species
 richness and abundance of birds in pasture sites were about one-fifth and
 one-third, respectively, of their values in mature rainforest
 (irrespective of patch size). Many measured attributes changed
 progressively across a gradient of increased habitat simplification.
 Rainforest specialists became less common and less diverse with decreased
 habitat patch size and vegetation maturity. However, even rainforest
 fragments of 1-3 ha supported about half of these species. Forest
 generalist species were largely insensitive to patch size and successional
 stage. Few species reached their greatest abundance in either small
 rainforest fragments or regrowth. All pastures were dominated by bird
 species whose typical native habitats were grassland, wetland and open
 eucalypt forest, while pasture trees modestly enhanced local bird
 communities. Overall, even small scattered patches of mature and regrowth
 forest contributed substantial bird diversity to local landscapes.
 Therefore, maximising the aggregate rainforest area is a useful regional
 conservation strategy.
DOI: 10.5061/dryad.jh9w0vt8q
title: Data from: Estimation of genetic parameters associated with frosty pod rot (Moniliophthora roreri) and cacao production in Mexico

description: Genetic parameters were estimated for frosty pod rot resistance and yield
 components in cacao using a linear mixed model approach (Restricted
 Maximum Likelihood and Best Linear Unbiased Prediction). Two progeny
 trials established in the Rosario Izapa Experimental Field of the INIFAP
 in Chiapas, Mexico, were evaluated for frosty pod rot incidence and yield
 components, including the number of pods per tree, bean dry weight per
 tree, number of beans per pod, bean dry weight per pod, seed index and pod
 index, for four years. Genetic correlations, age-age correlations and
 heritabilities were estimated. The narrow-sense heritability for frosty
 pod rot resistance was 0.46 and for the yield components it ranged from
 0.14 to 0.99. Backward selection, using UF-273 and Pa-169 as parents for
 new combinations, resulted in a reduction from -36.54 to -29.05% in frosty
 pod rot, respectively. The genetic correlations between bean dry weight
 per tree and frosty pod rot, number of pods per tree, number of beans per
 pod and pod index were -0.72, 0.89, 0.25 and 0.40, respectively (all
 significant at p &lt; 0.01). Age-age correlations and heritabilities
 from data subsets indicated that the first two years of evaluation and
 evaluating for only two specific months (August-September) in the year,
 should result almost in the same genetic estimates as using all four years
 data, for key traits, including frosty pod rot resistance, reducing the
 costs and accelerating breeding decisions.
description: In the
 two trials, individual trees were assessed weekly for mature pods during
 eight months from April to November for four consecutive years, beginning
 in 2009. The measured traits used in the analysis were the: frosty pod rot
 incidence measured by the total number of diseased pods per tree, bean dry
 weight per tree (DW, kg/tree), total number of pods per tree (NPd), number
 of beans per pod measured in all healthy pods harvested (NBPd), bean dry
 weight per pod (BWPd, g/pod), the seed index (SI) and pod index (PI). The
 FPR was obtained as the ratio of the diseased pods by the number of all
 pods harvested in the tree. All yield traits were taken on healthy pods,
 which were harvested, labeled and transported to the laboratory in
 polyethylene bags and processed at the same day. Beans were dried at 60 °C
 for 48 hours in a forced air oven (Binder® Germany). The SI was obtained
 as the proportion of BWPd and the NBPd; and the PI was obtained as the
 number of pods required to produce one kg of dry beans.
description: NA in Phenotypic data. Parental values not observed were
 predicted based on progeny trial results. Aiming the selection of
  potential parent clones for further breeding, backward selection was
 performed based on the results of the progeny test.
DOI: 10.15468/dl.jjzage
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhaphidophora spathacea"
 ]
}

 The dataset includes 56 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002456-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.prr4xgxjm
title: An experimental application of Hypena opulenta as a biocontrol agent for the invasive vine Vincetoxicum rossicum

description: 1. Pre-release testing for biological control agents is focused primarily
 on assessment of host-range specificity and safety of potential agents.
 Agent impact is considered pre-release, however the ultimate assessment of
 an agent must occur following release in the field under the target
 population levels and conditions of the invaded ecosystems. The invasive
 Eurasian vine, Vincetoxicum rossicum, has spread aggressively through its
 invaded range of eastern North America since its initial introduction in
 the late 1800’s. In laboratory tests, the Eurasian moth Hypena opulenta
 has shown great promise as a potential control agent for V. rossicum. 2.
 We were interested in the defoliating ability of H. opulenta and its
 subsequent effect on the seed production of V. rossicum under field
 conditions. To examine this, we established a field site near Kirkfield,
 Ontario that consisted of meadow and forest understory plots, both of
 which were highly invaded by V. rossicum. 3. We report highly significant
 feeding by H. opulenta in both light conditions. Unexpectedly, we observed
 a significant increase in seed production following folivory in shade
 conditions. We observed no significant effect of larval folivory on seed
 production under sun conditions, where V. rossicum seed production is
 greater by a factor of ten as compared to shade conditions. 4. Synthesis
 and application: It is unclear how continuous exposure to folivory by H.
 opulenta will affect mature V. rossicum stands, although it might be
 expected that such populations would invest in defenses to herbivory,
 possibly at the expense of reproductive output. In order to better
 understand if V. rossicum populations in either light condition could
 exhibit longer-term compensatory growth in response to folivory, further
 experimental work is needed that examines inter-annual variability in V.
 rossicum reproduction at variable H. opulenta densities.
description: Please refer to the publication for detailed description of
 methods.
DOI: 10.5061/dryad.nzs7h44pj
title: Association of caffeine and related analytes with resistance to Parkinson’s disease among LRRK2 mutation carriers: a metabolomic study

description: Objective: To identify markers of resistance to developing Parkinson’s
 disease (PD) among LRRK2 mutation (LRRK2+) carriers, we carried out
 metabolomic profiling in individuals with PD and unaffected controls (UC),
 with and without the LRRK2 mutation. Methods: Plasma from 368 PD and UC
 subjects in the LRRK2 Cohort Consortium (LCC), comprising 118 LRRK2+/PD+,
 115 LRRK2+/UC, 70 LRRK2-/PD+ and 65 LRRK2-/UC, and CSF available from 68
 of them were analyzed by liquid chromatography with mass spectrometry. For
 282 analytes quantified in plasma and CSF, we assessed differences among
 the four groups and interactions between LRRK2 and PD status, using ANCOVA
 models adjusted by age, study site cohort, and sex, with p-value
 corrections for multiple comparisons. Results: Plasma caffeine
 concentration was lower in PD vs. UC subjects (p&lt;0.001), more so
 among LRRK2+ carriers (by 76%) than among LRRK2- subjects (by 31%), with
 significant interaction between LRRK2 and PD status (p=0.005). Similar
 results were found for caffeine metabolites (paraxanthine, theophylline,
 1-methylxanthine) and a non-xanthine marker of coffee consumption
 (trigonelline) in plasma, and in the subset of corresponding CSF samples.
 Dietary caffeine was also lower in LRRK2+/PD+ compared to LRRK2+/UC with
 significant interaction effect with the LRRK2+ mutation (p &lt;0.001).
 Conclusions: Metabolomic analyses of the LCC samples identified caffeine,
 its demethylation metabolites, and trigonelline as prominent markers of
 resistance to PD linked to pathogenic LRRK2 mutations, more so than to
 idiopathic PD. As these analytes are known both as correlates of coffee
 consumption and as neuroprotectants in animal PD models, the findings may
 reflect their avoidance by those predisposed to develop PD or their
 protective effects among LRRK2 mutation carriers.
DOI: 10.15468/dl.u8cvd3
title: Occurrence Download

description: A dataset containing 339 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((159.00094 -48.95058,200.03306 -48.95058,200.03306 -32.54476,159.00094 -32.54476,159.00094 -48.95058))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Thuidiopsis sparsa"
 ]
}

 The dataset includes 339 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002457-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.