cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1557022.v1
title: Lab 2 Milkweeds in Danby Woods

description: This experiment was conducted at the grassland of Danby Woods in York University with the assistance of Alexandra from BIOL 2050 Ecology Lab 02 on Sep 22, 2015 between 3:45pm and 4:30pm with the temperature around 21°C. A transect tape was randomly placed on the grassland where Asclepias syriaca, commonly known as milkweeds, were observed. The distance (in ft) on the transect from the starting point to the corresponding milkweeds was recorded. Then the height of each milkweed was measured in feet using transect as a ruler. Number of leaves on the milkweeds were counted. Crowdedness of the patch around the milkweeds was recorded in the level from 0 to 3 in which 3 means most crowded. The process was repeated for 50 milkweed along the transect.
DOI: 10.6084/m9.figshare.1556181.v1
title: Plantago Major distribution in YorkU grasslands

description: This dataset was created by our ecology lab team Amena, Taylor, Keerthana and I. The data was recorded at York University's Keele campus on September 22, 2015 around 3:00PM - 4:00PM. During the lab the weather was sunny with a temperature of about 20 degrees. Our sampling was done via the random sampling method. We used a random number generator (https://www.random.org/) to avoid haphazard/biased sampling. After getting a number of 34 we took 34 steps before placing the transect down. We used the belt transect method, every Plantago Major plant within 1 metre of the transect was recorded. The data recorded was distance along the transect in Feet and inches, height in inches, # of leaves/flowers and the proximity of the plant to others within 50cm (rated from 0-3 explained in metadata). We sampled 50 plants along the transect. The average number of leaves found was 4.8, average height was 1.1 inches and the mode for proximity to another plant was 2.
DOI: 10.6084/m9.figshare.1556179.v1
title: Ecology Lab 2: Oberservation and Data Collection of the Common Plantain

description: This study was done in collaboration with 3 other team members composed of Muhammad Akram, Daniel Germani, and Markian Plawiuk. During data collection for this particular data set, Markian took on the role as lab assistant. This study took place at York University Keele Campus on Tuesday, September 22nd, 2015 at the Danby Grassland. The conditions of the environment where the study took place were 23 degrees Celsius, sunny, with mild breezy conditions. The Danby Grassland consisted of a large abundance of plant species no taller than knee height, with a clumped dispersion pattern, as “patches” of individuals crowding together were common. There were minor amounts of debris present within the area at the time of study. The study began at approximately 3:10PM, and concluded at approximately 4:02PM. The purpose of this study was to collect a dataset comprised of 50 individuals of common plantain (<em>Plantago major</em>) along the length of a randomly placed transect tape within the grassland. This study allowed for team members to familiarize themelves with distance methods used in practical ecology studies to estimate and observe population abundances and distributions. Each individual’s distance along the transect tape, height, number of leaves, number of flowers, and it’s crowdedness amongst other individuals within the immediate surrounding areas of observation were noted. Efficiency and effectiveness was ensured by having one team member moving along the transect line and taking note of the distance, number of leaves, flowers, and crowdedness, while the lab assistant measured the height of each species and reassured that the leaf count was correct. Both group members were responsible for making sure that movement along the transect line was as straight as possible and not skewed, and for spotting the next target individual located along the transect tape. This method of sampling used with the transect was the line method, as individuals located directly under the transect tape were recorded. The origin of the transect tape was held in place to the ground of the random location of origin of study by firmly and securely placing a pencil into the ground holding the end of the tape to ensure the distances measured were as accurate as possible. If the end of the grassland field was approached prior to the completion of data collection, a brand new random origin location was selected within the area of study to avoid biased sampling, and observations were resumed normally with new distances recorded till enough individuals have been observed.
DOI: 10.6084/m9.figshare.1557022.v2
title: Lab 2 Milkweeds in Danby Woods

description: This experiment was conducted at the grassland of Danby Woods in York University with the assistance of Alexandra from BIOL 2050 Ecology Lab 02 on Sep 22, 2015 between 3:45pm and 4:30pm with the temperature around 21°C. A transect tape was randomly placed on the grassland where Asclepias syriaca, commonly known as milkweeds, were observed. The distance (in ft) on the transect from the starting point to the corresponding milkweeds was recorded. Then the height of each milkweed was measured in feet using transect as a ruler. Number of leaves on the milkweeds were counted. Crowdedness of the patch around the milkweeds was recorded in the level from 0 to 3 in which 3 means most crowded. The process was repeated for 50 milkweed along the transect.
DOI: 10.6084/m9.figshare.1557022.v3
title: Lab 2 - Milkweeds in Danby Woods

description: This experiment was conducted at the grassland of Danby Woods in York University with the assistance of Alexandra from BIOL 2050 Ecology Lab 02 on Sep 22, 2015 between 3:45pm and 4:30pm with the temperature around 21°C. A transect tape was randomly placed on the grassland where Asclepias syriaca, commonly known as milkweeds, were observed. The distance (in ft) on the transect from the starting point to the corresponding milkweeds was recorded. Then the height of each milkweed was measured in feet using transect as a ruler. Number of leaves on the milkweeds were counted. Crowdedness of the patch around the milkweeds was recorded in the level from 0 to 3 in which 3 means most crowded. The process was repeated for 50 milkweed along the transect.
DOI: 10.6084/m9.figshare.1556171
title: The dataset for 10 randomly selected adult Staghorn Sumac followed by the nearest sapling in the Saywell Woodlot at York University

description: A dataset of 10 randomly selected adult Staghorn Sumac collected at the edge of the Saywell Woodlot located on York University Keele Campus (Monday September 21st, at approximately 4:00 pm). Weather conditions during that time were slightly cloudy and around 19 degrees celsius. The following measurements were recorded: (i) the dbh of the adult Staghorn Sumac, (ii) an estimation of the canopy coverage, (iii) distance to the nearest sapling, and (iv) sapling dbh. All measurements were recorded using a transect measuring tape. The experimenter would begin by selecting an adult tree, which was identfied based on the height of the tree (over 6 feet). Dbh was then recorded at chest level of the experimenter. Canopy coverage was recorded by having the experimenter make a square with their fingers and estimating how much sky can be seen. Once all measurements of the adult tree was recorded, the experimenter would then proceed to the nearest sapling. Trees with a smaller height than the same experimenter were considered as saplings. Measurements were taking from the center of the adult trunk to the center of the sapling trunk. Dbh was then recorded at the center of the trunk. The steps were repeated until 10 adult trees had been selected. All measurements were taken from the same experimenter to ensure consistency. Estimations were based on the experimenter's own judgement.
DOI: 10.6084/m9.figshare.1556171.v1
title: The dataset for 10 randomly selected adult Staghorn Sumac followed by the nearest sapling in the Saywell Woodlot at York University

description: A dataset of 10 randomly selected adult Staghorn Sumac collected at the edge of the Saywell Woodlot located on York University Keele Campus (Monday September 21st, at approximately 4:00 pm). Weather conditions during that time were slightly cloudy and around 19 degrees celsius. The following measurements were recorded: (i) the dbh of the adult Staghorn Sumac, (ii) an estimation of the canopy coverage, (iii) distance to the nearest sapling, and (iv) sapling dbh. All measurements were recorded using a transect measuring tape. The experimenter would begin by selecting an adult tree, which was identfied based on the height of the tree (over 6 feet). Dbh was then recorded at chest level of the experimenter. Canopy coverage was recorded by having the experimenter make a square with their fingers and estimating how much sky can be seen. Once all measurements of the adult tree was recorded, the experimenter would then proceed to the nearest sapling. Trees with a smaller height than the same experimenter were considered as saplings. Measurements were taking from the center of the adult trunk to the center of the sapling trunk. Dbh was then recorded at the center of the trunk. The steps were repeated until 10 adult trees had been selected. All measurements were taken from the same experimenter to ensure consistency. Estimations were based on the experimenter's own judgement.
DOI: 10.6084/m9.figshare.1556158
title: The coupling of soil resource environment and decomposition enzyme activity shifts across secondary succession: Sequences, mapping file, and metadata.

description: sequences in fastq format.mapping file.metadata.
DOI: 10.6084/m9.figshare.1556165
title: Salmonella Typhimurium ST313 in England and Wales

description: My poster from March 2015 on Salmonella Typhimurium ST313
DOI: 10.6084/m9.figshare.1557022.v4
title: Lab 2 - Milkweeds in Danby Woods

description: This experiment was conducted at the grassland of Danby Woods in York University with the assistance of Alexandra from BIOL 2050 Ecology Lab 02 on Sep 22, 2015 between 3:45pm and 4:30pm with the temperature around 21°C. A transect tape was randomly placed on the grassland where Asclepias syriaca, commonly known as milkweeds, were observed. The distance (in ft) on the transect from the starting point to the corresponding milkweeds was recorded. Then the height of each milkweed was measured in feet using transect as a ruler. Number of leaves on the milkweeds were counted. Crowdedness of the patch around the milkweeds was recorded in the level from 0 to 3 in which 3 means most crowded. The process was repeated for 50 milkweed along the transect.
DOI: 10.6084/m9.figshare.1556165.v1
title: Salmonella Typhimurium ST313 in England and Wales

description: My poster from March 2015 on Salmonella Typhimurium ST313
DOI: 10.6084/m9.figshare.1556152
title: Decreases in average bacterial community rRNA operon copy number during succession

description: Sequencing and mapping file for "Decreases in average bacterial community rRNA operon copy number during succession" in the ISME Journal.
DOI: 10.6084/m9.figshare.1557022.v5
title: Lab 2 - Milkweeds in Danby Woods

description: This experiment was conducted at the grassland of Danby Woods in York University with the assistance of Alexandra from BIOL 2050 Ecology Lab 02 on Sep 22, 2015 between 3:45pm and 4:30pm with the temperature around 21°C. A transect tape was randomly placed on the grassland where Asclepias syriaca, commonly known as milkweeds, were observed. The distance (in ft) on the transect from the starting point to the corresponding milkweeds was recorded. Then the height of each milkweed was measured in feet using transect as a ruler. Number of leaves on the milkweeds were counted. Crowdedness of the patch around the milkweeds was recorded in the level from 0 to 3 in which 3 means most crowded. The process was repeated for 50 milkweed along the transect.
DOI: 10.6084/m9.figshare.12919013.v1
title: Chemistry of Atmospheric Fine Particles during the COVID-19 Pandemic in a Megacity of China

description: COVID-19 data<br>
DOI: 10.6084/m9.figshare.1556141
title: Kew KMCC Madagascan Palms in Peril

description: Poster presented at GBIF (MadBif) symposium 'Biodiversity of Madagascar: richness and particularity'.
DOI: 10.6084/m9.figshare.1556142
title: Kew KMCC Madagascan Orchid Research and Conservation

description: Poster presented at GBIF (MadBif) symposium 'Biodiversity of Madagascar: richness and particularity'.
DOI: 10.6084/m9.figshare.1557022.v6
title: Lab 2 - Milkweeds in Danby Woods

description: This experiment was conducted at the grassland of Danby Woods in York University with the assistance of Alexandra from BIOL 2050 Ecology Lab 02 on Sep 22, 2015 between 3:45pm and 4:30pm with the temperature around 21°C. A transect tape was randomly placed on the grassland where Asclepias syriaca, commonly known as milkweeds, were observed. The distance (in ft) on the transect from the starting point to the corresponding milkweeds was recorded. Then the height of each milkweed was measured in feet using transect as a ruler. Number of leaves on the milkweeds were counted. Crowdedness of the patch around the milkweeds was recorded in the level from 0 to 3 in which 3 means most crowded. The process was repeated for 50 milkweed along the transect.
DOI: 10.6084/m9.figshare.1556141.v1
title: Kew KMCC Madagascan Palms in Peril

description: Poster presented at GBIF (MadBif) symposium 'Biodiversity of Madagascar: richness and particularity'.
DOI: 10.6084/m9.figshare.1556142.v2
title: Kew KMCC Madagascan Orchid Research and Conservation

description: Poster presented at GBIF (MadBif) symposium 'Biodiversity of Madagascar: richness and particularity'.
DOI: 10.6084/m9.figshare.1556139
title: Congress votes

description: Each line contains a vote. The columns are formatted as follows: bill id | vote id (a bill may contain more than one vote) | vote year | vote type | vote number | vote date | vote time | vote session id | congressmen name | congressmen id | congressmen state | congressmen party | congressmen vote | agreed with his/her party? -1 = no, 1 = yes | party vote
DOI: 10.6084/m9.figshare.1556142.v1
title: Madagascan Orchid Research and Conservation

description: Poster presented at GBIF (MadBif) symposium 'Biodiversity of Madagascar: richness and particularity'.
DOI: 10.6084/m9.figshare.1557022.v7
title: Lab 2 - Milkweeds in Danby Woods - Dataset 2

description: This experiment was conducted at the grassland of Danby Woods in York University with the assistance of Alexandra from BIOL 2050 Ecology Lab 02 on Sep 22, 2015 between 3:45pm and 4:30pm with the temperature around 21°C. A transect tape was randomly placed on the grassland where Asclepias syriaca, commonly known as milkweeds, were observed. The distance (in ft) on the transect from the starting point to the corresponding milkweeds was recorded. Then the height of each milkweed was measured in feet using transect as a ruler. Number of leaves on the milkweeds were counted. Crowdedness of the patch around the milkweeds was recorded in the level from 0 to 3 in which 3 means most crowded. The process was repeated for 50 milkweed along the transect.
DOI: 10.6084/m9.figshare.1555924
title: Reaction_Times

description: Tables of the reaction times for the paper Emotion-Motion interaction in Conversion Disorders
DOI: 10.6084/m9.figshare.1556139.v2
title: Congress votes

description: Each line contains a vote. The columns are formatted as follows: bill id | vote id (a bill may contain more than one vote) | vote year | vote type | vote number | vote date | vote time | vote session id | congressmen name | congressmen id | congressmen state | congressmen party | congressmen vote | agreed with his/her party? -1 = no, 1 = yes | party vote
DOI: 10.6084/m9.figshare.1555924.v1
title: Reaction_Times

description: Tables of the reaction times for the paper Emotion-Motion interaction in Conversion Disorders
DOI: 10.6084/m9.figshare.1555914
title: Wireless tri-axial trunk accelerometry detects deviations in dynamic center of mass motion due to running-induced fatigue

description: Raw data for participant characteristics, accelerometry-derived measures and sacral marker trajectory measures.
DOI: 10.6084/m9.figshare.1556139.v1
title: Congress votes

description: Each line contains a vote. The columns are formatted as follows: bill id | vote id (a bill may contain more than one vote) | vote year | vote type | vote number | vote date | vote time | vote session id | congressmen name | congressmen id | congressmen state | congressmen party | congressmen vote | agreed with his/her party? -1 = no, 1 = yes | party vote
DOI: 10.6084/m9.figshare.1555851
title: Vertebrate motif clusters v3.0

description: # Vertebrate motif clusters from cis-bp Current version: 3.0 All the motif information is based on the cis-bp database described in (Weirauch et al., 2014)[http://dx.doi.org/10.1016/j.cell.2014.08.009]. Motif information was downloaded from cis-bp (http://cisbp.ccbr.utoront/o.ca/; retrieved Oct 2014). Vertebrate motifs were selected based on the following list of species: Homo sapiens, Mus musculus, Rattus norvegicus, Danio rerio, Tetraodon nigroviridis, Xenopus laevis, Xenopus tropicalis, Gallus gallus, Meleagris gallopavo, Anolis carolinensis, Monodelphis domestica, Takifugu rubripes, Oncorhynchus tshawytscha, Gasterosteus aculeatus, Ornithorhynchus anatinus, Sus scrofa, Cavia porcellus, Oryctolagus cuniculus, Pan troglodytes, Taeniopygia guttata. Only motifs with direct evidence of binding in any of these species were selected. Within every motif family, as annotated by cis-bp, all motifs were clustered using 'gimme cluster' from the GimmeMotifs package (Heeringen and Veenstra, 2011)[http://github.com/simonvh/gimmemotifs] with a threshold of 0.9999. The cluster motif names are annotated with the motif family name. Any name containing 'Average' is a unique yet arbitrary name of a specific cluster of motifs. The annotation of motifs to factors and vice versa is based on the annotation of human, mouse and Xenopus tropicalis proteins from the cis-bp annotation and includes direct as well as inferred motifs. This is an aggregate over these three species, and might be incomplete. For more (species-)specific annotation, see the file 'TF_Information_all_motifs.txt' that can be obtained from cis-bp.
DOI: 10.6084/m9.figshare.1555748
title: THE HIDDEN SEXUALITY OF ALEXANDRIUM MINUTUM: AN EXAMPLE OF OVERLOOKED SEX IN DINOFLAGELLATES

description: "fcs" files
DOI: 10.6084/m9.figshare.1555671
title: Results of initial values simulation study

description: Results of the "Effects of initial values and convergence criterion in the two-parameter logistic model when estimating the latent distribution in BILOG-MG 3" simulation study, published in PLOS ONE.
DOI: 10.6084/m9.figshare.1555747
title: xx

description: xx
DOI: 10.6084/m9.figshare.1555851.v1
title: Vertebrate motif cluster v3.0

description: # Vertebrate motif clusters from cis-bp Current version: 3.0 All the motif information is based on the cis-bp database described in (Weirauch et al., 2014)[http://dx.doi.org/10.1016/j.cell.2014.08.009]. Motif information was downloaded from cis-bp (http://cisbp.ccbr.utoront/o.ca/; retrieved Oct 2014). Vertebrate motifs were selected based on the following list of species: Homo sapiens, Mus musculus, Rattus norvegicus, Danio rerio, Tetraodon nigroviridis, Xenopus laevis, Xenopus tropicalis, Gallus gallus, Meleagris gallopavo, Anolis carolinensis, Monodelphis domestica, Takifugu rubripes, Oncorhynchus tshawytscha, Gasterosteus aculeatus, Ornithorhynchus anatinus, Sus scrofa, Cavia porcellus, Oryctolagus cuniculus, Pan troglodytes, Taeniopygia guttata. Only motifs with direct evidence of binding in any of these species were selected. Within every motif family, as annotated by cis-bp, all motifs were clustered using 'gimme cluster' from the GimmeMotifs package (Heeringen and Veenstra, 2011)[http://github.com/simonvh/gimmemotifs] with a threshold of 0.9999. The cluster motif names are annotated with the motif family name. Any name containing 'Average' is a unique yet arbitrary name of a specific cluster of motifs. The annotation of motifs to factors and vice versa is based on the annotation of human, mouse and Xenopus tropicalis proteins from the cis-bp annotation and includes direct as well as inferred motifs. This is an aggregate over these three species, and might be incomplete. For more (species-)specific annotation, see the file 'TF_Information_all_motifs.txt' that can be obtained from cis-bp.
DOI: 10.6084/m9.figshare.1555671.v1
title: Results of initial values simulation study

description: Results of the "Effects of initial values and convergence criterion in the two-parameter logistic model when estimating the latent distribution in BILOG-MG 3" simulation study, published in PLOS ONE.
DOI: 10.6084/m9.figshare.1555667.v1
title: Automatic algorithms for time series forecasting

description: Talk given at Google (Mountain View, California) on 6th October.
DOI: 10.6084/m9.figshare.1555747.v2
title: THE HIDDEN SEXUALITY OF ALEXANDRIUM MINUTUM: AN EXAMPLE OF OVERLOOKED SEX IN DINOFLAGELLATES

description: fsc supplementary files for plos one manuscript&gt; THE HIDDEN SEXUALITY OF ALEXANDRIUM MINUTUM: AN EXAMPLE OF OVERLOOKED SEX IN DINOFLAGELLATES
DOI: 10.6084/m9.figshare.1555443
title: Purple Goldenrod at Stong Pond

description: On the sunny day of September 21, 2015 at 3:00-4:30pm, data was collected from purple goldenrods—Solidago spp.—at Stong Pond York University. A transect tape was put from the shore towards land. Purple goldenrods that were easily identified next to the transect tape were recorded for its distance from the shore, height, number of leaves, number of flowers and crowdedness. The data was collected to see if there was any relationship between the four variables and its distance from the shore.
DOI: 10.6084/m9.figshare.1555443.v1
title: Purple Goldenrod at Stong Pond

description: On the sunny day of September 21, 2015 at 3:00-4:30pm, data was collected from purple goldenrods—Solidago spp.—at Stong Pond York University. A transect tape was put from the shore towards land. Purple goldenrods that were easily identified next to the transect tape were recorded for its distance from the shore, height, number of leaves, number of flowers and crowdedness. The data was collected to see if there was any relationship between the four variables and its distance from the shore.
DOI: 10.6084/m9.figshare.1555747.v3
title: THE HIDDEN SEXUALITY OF ALEXANDRIUM MINUTUM: AN EXAMPLE OF OVERLOOKED SEX IN DINOFLAGELLATES

description: fsc supplementary files for plos one manuscript&gt; THE HIDDEN SEXUALITY OF ALEXANDRIUM MINUTUM: AN EXAMPLE OF OVERLOOKED SEX IN DINOFLAGELLATES
DOI: 10.6084/m9.figshare.1555007
title: Peterson et al Raw Biofilm Data

description: Raw data for the study "Role of Sediment Composition and Biostratinomy in the Development of Microbial Biofilms in Vertebrate Remains".
DOI: 10.6084/m9.figshare.1555004
title: Data for Woodland survey 2

description: In the woodlot, the percent coverage of the canopy and distance to nearest sapling was measured for adult elm trees. Elm trees were selected at random from an area of approximately one hectare. A tree was determined to be adult at about three times the height of a human. The distances between saplings and adults were rounded to the nearest tenth of a meter. Canopy coverage was estimated by viewing the sky from the base of the tree through a square formed by my thumbs and index fingers. These two variables were recorded for ten adult elm trees.