cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.2637859
title: Dataset for "Co-Localization of Microstructural Damage and Excessive Mechanical Strain at Aortic Branches in Angiotensin-II Infused Mice"

description: This dataset contains geometries and simulation files for the manuscript "Co-Localization of Microstructural Damage and Excessive Mechanical Strain at Aortic Branches in Angiotensin-II Infused Mice", to be published in the journal "Biomechanics and Modeling in Mechanobiology".

For each animal described in the study, the following data are uploaded:

[mouse name]_Strain.vtp contains the Eulerian strain estimation for each abdominal aorta mapped back on the ex vivo undeformed configuration.

[mouse name]_Scan.vtp is the abdominal aorta in the ex vivo undeformed configuration, as scanned using PCXTM imaging.

[mouse name]_Exitron.vtp is the distribution of contrast agent infiltration along the aorta (can be superimposed to the corresponding ‘scan.vtp’ file), which serves a surrogate for vascular damage.

The aortic partitioning described in the paper’s method section was performed on all of the above .vtp files for every animal. .vtp files can be visualized in the open-source Paraview or similar software, and used for centerline calculations using the open-source vmtk software.
DOI: 10.5281/zenodo.2637993
title: YALFF's reassembled 32-mers datasets

description: This repository contains the reassembled 32-mers of different datasets for the software YALFF https://doi.org/10.5281/zenodo.2637919 In particular: hg19.reassembled.fa.gz and hg38.reassembled.fa.gz are reference fasta files containing the reassembled contigs from hg19 and hg38 respectively. Note that these two files are exactly equivalent to the original ones if used as 32-mer indices because they contain the exact same 32-mers at least once. Obviously they cannot be used for alignment, only presence/absence queries. affykmers.reassembled.fa.gz contains all the reassembled 32-mers from hg19 and the variants spanning the the SNPs listed in Affymetrix_6_SNPs.txt (available at http://cb.csail.mit.edu/cb/lava/). dbSNPkmers.reassembled.fa.gz contains all the reassembled 32-mers from hg19 and the variants spanning the the SNPs listed in SNPs142_hg19_Common.filt.txt (available at http://cb.csail.mit.edu/cb/lava/). dec200.reassembled.fa.gz is the reassembled database of 32-mers of Quartz (the dec200.bin file at http://cb.csail.mit.edu/cb/quartz). mit_all.reassembled.fa.gz is the FASTA with the contigs obtained by reassembling the hg19, dec200 and all the SNPs into a single database.
description: The k-mer length used for reassembly is 32. It is not possible to search k-mers of length greater than 32.
description: {"references": ["Shibuya, Y. and Comin, M. (2019). Indexing k-mers in Linear-space for Quality Value Compression.In Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 3: BIOINFORMATICS, ISBN 978-989-758-353-7, pages 21-29. DOI: 10.5220/0007369100210029"]}
DOI: 10.5281/zenodo.2637994
title: YALFF's reassembled 32-mers datasets

description: This repository contains the reassembled 32-mers of different datasets for the software YALFF https://doi.org/10.5281/zenodo.2637919 In particular: hg19.reassembled.fa.gz and hg38.reassembled.fa.gz are reference fasta files containing the reassembled contigs from hg19 and hg38 respectively. Note that these two files are exactly equivalent to the original ones if used as 32-mer indices because they contain the exact same 32-mers at least once. Obviously they cannot be used for alignment, only presence/absence queries. affykmers.reassembled.fa.gz contains all the reassembled 32-mers from hg19 and the variants spanning the the SNPs listed in Affymetrix_6_SNPs.txt (available at http://cb.csail.mit.edu/cb/lava/). dbSNPkmers.reassembled.fa.gz contains all the reassembled 32-mers from hg19 and the variants spanning the the SNPs listed in SNPs142_hg19_Common.filt.txt (available at http://cb.csail.mit.edu/cb/lava/). dec200.reassembled.fa.gz is the reassembled database of 32-mers of Quartz (the dec200.bin file at http://cb.csail.mit.edu/cb/quartz). mit_all.reassembled.fa.gz is the FASTA with the contigs obtained by reassembling the hg19, dec200 and all the SNPs into a single database.
description: The k-mer length used for reassembly is 32. It is not possible to search k-mers of length greater than 32.
description: {"references": ["Shibuya, Y. and Comin, M. (2019). Indexing k-mers in Linear-space for Quality Value Compression.In Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 3: BIOINFORMATICS, ISBN 978-989-758-353-7, pages 21-29. DOI: 10.5220/0007369100210029"]}
DOI: 10.5281/zenodo.2638006
title: Analytical Electron Microscopy of Grain Boundary Segregation: Application to Al-Zn-Mg-Cu (7xxx) Alloys - Supporting Data

description: Data to reproduce the figures reported in the manuscript Analytical Electron Microscopy of Grain Boundary Segregation: Application to Al-Zn-Mg-Cu (7xxx) Alloys. Published open access in Materials Characterization https://doi.org/10.1016/j.matchar.2019.06.016
description: Funded by EPSRC LightFORM programme EP/R001715/1
DOI: 10.5281/zenodo.2638007
title: Analytical Electron Microscopy of Grain Boundary Segregation: Application to Al-Zn-Mg-Cu (7xxx) Alloys - Supporting Data

description: Data to reproduce the figures reported in the manuscript Analytical Electron Microscopy of Grain Boundary Segregation: Application to Al-Zn-Mg-Cu (7xxx) Alloys. Published open access in Materials Characterization https://doi.org/10.1016/j.matchar.2019.06.016
description: Funded by EPSRC LightFORM programme EP/R001715/1
DOI: 10.25934/00003546
title: A Phase IIb/III, Multi-centre, Double-blind, Randomised, Placebo-controlled, Dose Ranging Study of Tamsulosin Hydrochloride (Low, Medium and High Dose) as Treatment in Children With Neuropathic Bladder for Three Months

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5519/qd.v75gsg2c
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (28254 records)
DOI: 10.25934/00003558
title: A 12 Weeks Open Label Two Parallel Groups Study to Assess the Efficacy of Orally Administered Duloxetine 60 mg and 120 mg Per Day on Treatment Outcomes in Patients With Diabetic Peripheral Neuropathic Pain With and Without Co-morbid Major Depressive Disorder. The Primary Objective of This Study is to Evaluate Whether the Efficacy of Duloxetine Given as 60 mg to 120 mg Once Daily (QD), Measured by the BPI Interference Score After 12 Weeks Shows a Clinically Relevant Improvement in the DPNP Patients With Co-morbid MDD

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.6073/pasta/8ef7a02e695cfa050e1c3c532334e49b
title: Southern Appalachia NLCD Landcover

description: Satellite imagery (mosaicked +ETM and TM imagery satellite imagery from late 2005 through mid-2006) were downloaded from the web for spring, leafoff, and leafon conditions (Fig. 2).  From these layers we derived tasseled cap bands 1,2,3. Other data used included digital elevation models (DEMs), DEM slope calculations, and 2006 NAPP DOQQs (used for training sets). We classified imagery using classification and regression tree method (CART) using a combination of Landsat TM imagery and ancillary data. The specific CART program used was See5, which implements a gain ratio criterion in tree development and pruning (Quinlan, 1993).  We used boosting and cross-validation to improve classification accuracy (boosting) and estimate accuracy (cross-validation).
DOI: 10.17632/62vnwrxbyh.1
title: Data for: Greenhouse gas fluxes from human waste management pathways in Haiti

description: Greenhouse gas flux measurements from human waste management pathways in Haiti.
DOI: 10.17632/s6jgw63dg6.1
title: Data for: Greenhouse gas fluxes from human waste management pathways in Haiti

description: Greenhouse gas fluxes from ecological sanitation composting experiment, with a paired comparison of piles with either cement lining or soil lining.
DOI: 10.17632/7r6xg9zbwh.1
title: Data for: Accounting for spatial patterns in deriving sea-level rise thresholds for salt marsh stability: more than just total areas?

description: The files include predicted salt marsh distribution maps at the Grand Bay National Estuarine Research Reserve in 2050 and 2100 under a variety of sea-level rise scenarios (040 - 4 mm/yr, 045 - 4.5 mm/yr, ...., 200 - 20 mm/yr). They also include landscape metrics for salt marshes calculated based on these maps.
DOI: 10.25934/00003584
title: Phase I Dose Escalation Study of Concomitant BIBF 1120 and BIBW 2992 in Patients With Advanced Solid Tumours.

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.17632/gxh3tbb8hy.1
title: Data for: Exhumation of the Western Qinling and the building of the northeastern margin of the Tibetan Plateau

description: Single grain-age data calculated by Trackkey software
DOI: 10.17632/f7cmkfb2d9.1
title: Data for: Annual surface hydrographical variability in a coral reef system under the influence of river discharges.
DOI: 10.5281/zenodo.2637999
title: Dataset for "Synchrotron-based phase contrast imaging of cardiovascular tissue in mice—grating interferometry or phase propagation?"

description: This dataset contains images that were used in the analysis of the manuscript "Synchrotron-based phase contrast imaging of cardiovascular tissue in mice—grating interferometry or phase propagation?", that was published in Biomedical Physics and Engineering Express in 2018. Images are uploaded in .tif format. Three different synchrotron-based imaging techniques were compared on the same cardiovascular samples: grating interferometry (GI) and absorption-based phase propagation with and without phase retrieval according to Paganins method. An excel file is provided in which the nomenclature of the files is explained.
DOI: 10.5517/ccdc.csd.cc223dk5
title: CCDC 1909896: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Murray V. Baker, Peter J. Barnard|2019|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/f3wgfx4dsc.1
title: Data for: Exposure to artificial light at night increases innate immune activity during development in a precocial bird

description: Data include individual identifiers (bird ID), the week during which data were collected, bactericidal activity (BKA), the treatment applied to each individual (Treatment), the experimental period (Period), the sex of each individual (Sex), and the morphotype of each individual (Morphotype).
DOI: 10.5281/zenodo.2637998
title: Dataset for "Synchrotron-based phase contrast imaging of cardiovascular tissue in mice—grating interferometry or phase propagation?"

description: This dataset contains images that were used in the analysis of the manuscript "Synchrotron-based phase contrast imaging of cardiovascular tissue in mice—grating interferometry or phase propagation?", that was published in Biomedical Physics and Engineering Express in 2018. Images are uploaded in .tif format. Three different synchrotron-based imaging techniques were compared on the same cardiovascular samples: grating interferometry (GI) and absorption-based phase propagation with and without phase retrieval according to Paganins method. An excel file is provided in which the nomenclature of the files is explained.
DOI: 10.25934/00003652
title: Post-Marketing Surveillance on the Long-Term Use of Prazaxa® Capsules in Patients With Nonvalvular Atrial Fibrillation

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5258/soton/d0839
title: Dataset for: Applying control algorithms to ultrasonic particle manipulation

description: Dataset supports 'Applying control algorithms to ultrasonic particle manipulation' a PhD thesis by Zaid, Shaglwf.
DOI: 10.17632/wm4mnbwnps.1
title: Data for: Was the Arctic Ocean ice free during the latest Cretaceous ? The role of CO2 and gateway configurations.

description: In the data set we publish DJF tsurf and sss for each simulation. Furthermore, we make available MA sea-ice compactness for all experiments as well wind speeds for experiments C-1120 and GNS-47_4x for DJF and JJA. All data will be available on Pangea when the manuscript will be accepted.
DOI: 10.17632/gw77pf9smd.1
title: Data for: Perturbation of Neurotransmitter Profiles in the Central Nervous System of Marine Medaka (Oryzias melastigma) after Exposure to Breveotoxin PbTx-1 - A Multivariate Approach to Establish Exposure Biomarkers

description: Concentrations of selected classical neurotransmitters in brain tissues of marine medaka after exposure to various dose levels of waterborne brevetoxin PbTx-1
DOI: 10.5517/ccdc.csd.cc13dgdc
title: CCDC 1024872: Experimental Crystal Structure Determination

description: Related Article: Sébastien Dhers, Humphrey L. C. Feltham, Mathieu Rouzières, Rodolphe Clérac, Sally Brooker|2019|Inorg.Chem.|58|5543|doi:10.1021/acs.inorgchem.8b03455
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc13dgfd
title: CCDC 1024873: Experimental Crystal Structure Determination

description: Related Article: Sébastien Dhers, Humphrey L. C. Feltham, Mathieu Rouzières, Rodolphe Clérac, Sally Brooker|2019|Inorg.Chem.|58|5543|doi:10.1021/acs.inorgchem.8b03455
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.2638462
title: Binary black-hole simulation SXS:BBH:0030

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5517/ccdc.csd.cc13dggf
title: CCDC 1024874: Experimental Crystal Structure Determination

description: Related Article: Sébastien Dhers, Humphrey L. C. Feltham, Mathieu Rouzières, Rodolphe Clérac, Sally Brooker|2019|Inorg.Chem.|58|5543|doi:10.1021/acs.inorgchem.8b03455
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc13dgkj
title: CCDC 1024877: Experimental Crystal Structure Determination

description: Related Article: Sébastien Dhers, Humphrey L. C. Feltham, Mathieu Rouzières, Rodolphe Clérac, Sally Brooker|2019|Inorg.Chem.|58|5543|doi:10.1021/acs.inorgchem.8b03455
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zb4jz
title: CCDC 1827001: Experimental Crystal Structure Determination

description: Related Article: Pokpong Rungthanaphatsophon, Iker del Rosal, Robert J. Ward, Sean P. Vilanova, Steven P. Kelley, Laurent Maron, Justin R. Walensky|2019|Organometallics|38|1733|doi:10.1021/acs.organomet.9b00043
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zb4k0
title: CCDC 1827002: Experimental Crystal Structure Determination

description: Related Article: Pokpong Rungthanaphatsophon, Iker del Rosal, Robert J. Ward, Sean P. Vilanova, Steven P. Kelley, Laurent Maron, Justin R. Walensky|2019|Organometallics|38|1733|doi:10.1021/acs.organomet.9b00043
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/6x6c4387ch.1
title: Data for: Determination of Strain Fields on Two-Dimensional Images using the STC method
DOI: 10.17632/g4rdy54tjd.1
title: Data for: Determination of Strain Fields on Two-Dimensional Images using the STC method
DOI: 10.5287/bodleian:keepz22nk
title: Evolutionary algorithm optimisation of Zeeman deceleration: Is it worthwhile for longer decelerators? Dataset
DOI: 10.17632/n4v864vfsc.1
title: Data for: Determination of Strain Fields on Two-Dimensional Images using the STC method
DOI: 10.18739/a2b56d44z
title: Flow data from Hot Springs Creek, Imuruk Basin, Alaska, 2012
DOI: 10.25934/00003731
title: An Eight-week, Randomized, Double-blind, Two Parallel Groups, Study to Assess Clinical Response of Duloxetine 60 mg and 120 mg Per Day in Patients Hospitalized for Severe Depression.

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.17632/9nwr36nd59.1
title: Data for: The Gut-Brain Relationship: Investigating the effect of multispecies probiotics on anxiety.

description: A year-long investigation on the effect of probiotic on anxiety
DOI: 10.25934/00003734
title: A Ten-week, Randomized, Double-blind Study Evaluating the Efficacy of Duloxetine 60 mg Once Daily Versus Placebo in Outpatients With Major Depressive Disorder and Pain (EU-Pain Enriched Study)

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5519/qd.v0ap89o1
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (31 records)
DOI: 10.17632/w8pv2cmfjx.1
title: Data for: Primed Mesenchymal Stem Cells Package Exosomes with Metabolites Associated with Immunomodulation

description: Metabolomics and lipidomics data associated with MSCs that have been primed with hypoxia (1% O2) and serum deprivation for 48 hours, as compared to MSC that have been classically cultured (20% FBS, atmospheric oxygen). Data also includes lipidomic and metabolomic data from exosomes derived from primed MSCs
DOI: 10.25934/00003746
title: Assessment of Electrophysiological Effects of Tipranavir Co-administered With Ritonavir Given b.i.d. for 2.5 Days on the QT Interval in Healthy Female and Male Subjects. A Double-blind, Randomised, Placebo Controlled, Two-way Crossover Study With a Positive Control (Moxifloxacin) and Parallel Dose Groups

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.