cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/7mt9cf89ws.2
title: Dataset: Composition of Ichthyocarbonate and Associated Organic Coatings

description: The datasets available here include measurements of dissolution rate on natural and bleach-treated ichthyocarbonate produced by the Gulf toadfish (Opsanus beta) and the Olive flounder (Paralichthys olivaceus) reported in the first tab. In addition, a second tab reports the C/N ratios and stable carbon isotope values of organic matter associated with ichthyocarbonate produced by the Gulf toadfish and Olive flounder. Stable carbon isotope values of organic matter associated with ichthyocarbonate produced by the Gulf toadfish were previously reported in Oehlert et al., (2024), but reported again here to enable statistical comparison between the composition of ichthyocarbonate produced by different species. Finally, volumetric analyses of carbonate and organic matter associated with ichthyocarbonate assessed via microCT analyses are presented in the third tab of this dataset. 

References:
Oehlert, A.M., Garza, J., Nixon, S., Frank, L., Folkerts, E.J., Heuer, R.M., Benetti, D.D., del Campo, J., Gomez, F., Grosell, M. (2024). Implications of dietary carbon incorporation in fish carbonates for the global carbon cycle. Science of the Total Environment, 916, 169895.
DOI: 10.17632/bp3jcnfmw8.1
title: Investigating the potential impact of lipid-lowering drugs on thyroid dysfunction: a Mendelian randomization study

description: Supplementary Materials
DOI: 10.17632/tf75c4r2yk.1
title: LINF_340021900

description: DNA-binding domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/f6znmx9prb.1
title: LINF_340020400

description: AAA+ ATPase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/xvyv69hzth.1
title: LINF_340021800

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/g7xnn2bm4g.1
title: Nitrogen deficiency in maize: annotated image classification dataset

description: 1200 images were collected in the field in July 2023, in a 5-day window around flowering time of different genotypes. There were three N fertilization levels: N0, N69 and NFull, with no added N, 69 kg of added N and full fertilization with 136 kg added N, respectively. 238 genotypes were sown in augmented design, where some genotypes are replicated and the others are not. Images at different field rows were taken randomly between 7:30 and 11:00 AM.
"TensorFlow_preprocessing.ipynb" notebook can be used for data preprocessing and generation of additional 1200- 3600 images in processes of augmentation and segmentation.
DOI: 10.17632/gxdmbnmbvh.1
title: Double Torus Data with Hollow Intersection

description: Double torus data generation involves the computational creation of 3D models representing two torus shapes with a hollow intersection. The process uses mathematical equations and algorithms to define the torus surfaces and their intersection, allowing for accurate visualization and analysis of these complex geometries. This data can be utilized in various fields, such as computer graphics, geometric modeling, and scientific visualization, enabling researchers to explore and understand intricate toroidal structures with practical applications in architecture, design, and engineering. The data set has been generated following our proposed double torus data generation process.
DOI: 10.17632/g8fhf7fbds.1
title: EcoCropsAID

description: Thailand’s Economic Crops Aerial Image Dataset We introduce the novel economic crops aerial image dataset, namely the EcoCropsAID dataset. This dataset was collected in Thailand from five economic crops that were cultivated in different provinces and regions between 2014 and 2018. The aerial images of economic crops were gathered based on Agri-Map Online provided by the Ministry of Agriculture and Cooperatives and the National Electronics and Computer Technology Center (NECTEC). The Agri-Map Online is an agriculture map that all departments under the Ministry of Agriculture and Cooperatives use as an agriculture management tool. Subsequent agricultural information is accurate and up-to-date. Then, the Google Earth application was employed to capture aerial images after we selected the economic crops areas in which images were to be collected. It is quite a complex dataset because the Google Earth program used several remote imaging sensors to record the aerial images. The EcoCropsAID dataset includes five categories (rice, sugarcane, cassava, rubber, and longan) and contains 5,400 images. Each class has around 1,000 images. To prepare the aerial images of the economic crops, we recorded the image with 600 × 600 pixels and stored it in the RGB color format. The challenges of classification on the EcoCropsAID dataset are 1) many different image resolutions and colors are contained in the EcoCropsAID dataset due to the various remote imaging sensors, 2) the similarity of patterns amongst each class, for example, longan and rubber, and 3) the difference of pattern inside the same class, for example, cassava and rice.
DOI: 10.17632/g8fhf7fbds.2
title: EcoCropsAID: Thailand’s Economic Crops Aerial Image Dataset

description: Thailand’s Economic Crops Aerial Image Dataset (EcoCropsAID)

We introduce the novel Economic Crops Aerial Image Dataset, named the EcoCropsAID dataset. This dataset was collected in Thailand and consists of aerial images of five key economic crops cultivated in different provinces and regions between 2014 and 2018. The dataset was compiled based on data from Agri-Map Online, a tool provided by the Ministry of Agriculture and Cooperatives and the National Electronics and Computer Technology Center (NECTEC). Agri-Map Online is an agricultural mapping system widely used by departments under the Ministry of Agriculture and Cooperatives for agricultural management. It ensures that the agricultural information is accurate and up-to-date. The Google Earth application was subsequently employed to capture aerial images of the selected economic crop areas. The dataset is complex, as the Google Earth program utilizes various remote imaging sensors to capture the aerial images.

The EcoCropsAID dataset includes five categories (rice, sugarcane, cassava, rubber, and longan), containing a total of 5,400 images, with each class comprising approximately 1,000 images. The aerial images were captured at a resolution of 600 × 600 pixels and stored in RGB color format.

The challenges associated with classifying the EcoCropsAID dataset include: 1) the presence of varying image resolutions and colors due to the different remote imaging sensors used, 2) the similarity of patterns among certain classes, such as longan and rubber, and 3) the differences in patterns within the same class, such as cassava and rice.
DOI: 10.17632/rkz52fv463.2
title: Deep drop: a common finding in uroflowmetry of healthy children and adolescents

description: This database presents the results of our large-scale cross-sectional study of uroflowmetry tests in healthy children and adolescents. A total of 2299 uroflowmetry curves from 1538 children and adolescents aged 5-18 years were analyzed. Based on the results, we proposed comprehensive criteria for defining “deep drop (DD)” and assess the incidence of DD in the uroflowmetry curves of health subjects. Subsequently, we assessed the accordance with the interpretation of DD with an additional 100 randomly selected uroflowmetry curves from the urology clinic. We hope that this set of criteria will help define staccato uroflowmetry pattern and standardize terminology for future research.
DOI: 10.17632/gxdmbnmbvh.2
title: Double Torus Data with Hollow Intersection

description: Double torus data generation involves the computational creation of 3D models representing two torus shapes with a hollow intersection. The process uses mathematical equations and algorithms to define the torus surfaces and their intersection, allowing for accurate visualization and analysis of these complex geometries. This data can be utilized in various fields, such as computer graphics, geometric modeling, and scientific visualization, enabling researchers to explore and understand intricate toroidal structures with practical applications in architecture, design, and engineering. The data set has been generated following our proposed double torus data generation process.
DOI: 10.17632/wb7mddr8sm.2
title: Thallium isotope cycling in a ferruginous Precambrian ocean analogue

description: Data associated with a manuscript submitted for review to Geochimica et Cosmochimica Acta.
DOI: 10.17632/xbdy8mmbth.1
title: Dataset of XAF1 promotes anti-RNA virus immune responses by regulating chromatin accessibility

description: Dataset of XAF1 promotes anti-RNA virus immune responses by regulating chromatin accessibility
DOI: 10.17632/pg4my5b753.1
title: Optimal insect-based feed for layer chicken production: Are farmers making profits by substituting plant-based proteins?

description: Dataset comprises on growth (daily weight gain), feed intake (daily feed intake and feed conversion ratio), laying (egg production i.e number of eggs and laying percentage) and economic performance (cost of feed formulation, cost benefit analysis and marginal analysis) of Isa brown chicks, growers and layers (n= 210) fed diets integrated with various inclusion levels of full- fat black soldier fly larvae meals in Kenya. The data was collected between April 2020 and July 2021.
DOI: 10.5519/qd.l2zu4eju
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5915408 records)
DOI: 10.17632/6p444yz4yb.2
title: ARTICLE SKIN HYPERPIGMENTATION INDUCED BY CLOFAZIMINE IN LEPROSY PATIENTS

description: Supplementary material from the appendices of the skin color measurement protocol (APPENDIX A) with the colorimeter and the structured questionnaire on stigma caused by clofazimine-induced skin hyperpigmentation (APPENDIX B).
DOI: 10.17632/w6mzdsfnym.1
title: Instances for the multi-trip team orienteering problem with integrated tours and inventory decisions in a blood supply chain

description: The instance title presents the number of potential sites (n), the number of periods (h), the number of mobile collection sites (m), the number of shuttles (u), and the number of hospitals (v). Each instance presents the following:

First, general information:

n: number of potential sites
m: number of mobile collection sites
u: number of shuttles
Q: capacity of the mobile collection sites [whole-blood units]
h: number of periods of the planning horizon
v: number of hospitals
tMax: arrival time limit [units of time]

Second, the demand for platelets (PLTs) units in each period t and each hospital z. Third, the demand for red-blood-cells (RBCs) units in each period t and each hospital z.

Fourth, parameters related to each node i, where the first and last nodes correspond to the blood center and the others to the potential sites:

x and y: coordinates
s: service time [units of time]
p: total donation level or profit [whole-blood units]
e: opening time of activities [units of time]
l: closing time of activities [units of time]

Finally, the travel times between each pair of nodes
DOI: 10.17632/b3hc35g95n.1
title: Data for E-Dhb generating enzymes

description: Data associated with: 
J Am Chem Soc. 2022 Apr 13;144(14):6373-6382. doi: 10.1021/jacs.2c00517 ; 
ACS Chem Biol. 2022 Sep 16;17(9):2551-2558. doi: 10.1021/acschembio.2c00492 ; 
Chemical Communications, 2023, DOI: 10.1039/D2CC06345J
DOI: 10.17632/kzjkdbt27m.1
title: Diffusion, chemical bonding, and kinetic fractionation of noble gases in the primordial magma ocean

description: We studied the diffusion of noble gases in the primordial magma ocean. Here is the data set we produced using ab inito molecular dynamic. Those data are used in a paper submitted to GCA.
DOI: 10.17632/6bzjz73yr9.1
title: LINF_340025900

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.14699357
title: Determinants of good governance practices: the role of board independence - DATASET
DOI: 10.5281/zenodo.14699358
title: Determinants of good governance practices: the role of board independence - DATASET
DOI: 10.17632/gpm2wcy5dz.1
title: LINF_340023600

description: Amastin-like surface protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/x6ggzp2ycn.1
title: Lumbar spine MRI annotation with IVD height and Pfirrmann grade predictions (PLOS ONE 2024)

description: This is the data used in the paper submitted for publication in 2024 to PLOS ONE journal titled "Lumbar spine MRI annotation with IVD height and Pfirrmann grade predictions (PLOS ONE 2024)"

This dataset contains 515 T2-weighted mid-sagittal slices selected from the Lumbar Spine MRI dataset (https://data.mendeley.com/datasets/k57fr854j2/2) using the image classification method (Natalia and Sudirman, 2022). Mid-sagittal images are defined as the image that is located closest to the median plane bisecting the body vertically through the midline roughly equally from the left and right side.

There are six sub-folders.
• DICOM – contains the 515 original DICOM images (file extension .ima)
• Input_384 - contains the corresponding PNG file of each DICOM image after being scaled to 384x384 pixels
• Label_384_6SG - contains the label/segmented images that were created manually. These images were used to train deep-learning image segmentation models
• Inferred_384_6SG - contains the label/segmented images that were the results of the automatic segmentation using ResNet-50 architecture (the best model we found in our experiment for this dataset)
• Postprocessed_384_6SG – contains the result of applying post-processing (to improve the quality of the segmentation)
• IVD_HeightResultsPP – contains the automatically determined IVD mid-height data for each input image

The files with filenames beginning with Hyperparameters are text files containing the result of the hyperparameter optimization process during the machine learning training.

The file MLTrainingData – PP.mat is a MATLAB data file containing the extracted self-similar color correlogram feature from the last three IVD regions in each input image.

References

Natalia, F. and Sudirman, S. (2022) Classification of Sagittal Lumbar Spine MRI for Lumbar Spinal Stenosis Detection Using Transfer Learning of a Deep Convolutional Neural Network. Edited by A. K. Nagar et al. Singapore: Springer Nature Singapore. doi: 10.1007/978-981-16-6309-3_16.
DOI: 10.17632/jgzmzh4nr9.1
title: The Arctic Oscillation Modulates the Interannual Variation in Particulate Organic Carbon Dispersal on the Eurasian Arctic Shelf

description: The Arctic Oscillation (AO) affects river plume pathways and material supply by controlling the atmospheric circulation. We analyzed the interannual variation in particulate organic carbon (POC) and hydrological properties in the Eurasian Arctic shelf (EAS) during summer to examine the influence of the AO on POC pathways. Our results characterized the year-round alongshore/offshore distribution of highly depleted δ13C values in the Laptev Sea under various atmospheric conditions. We measured the concentrations of suspended particulate matter, POC and particulate nitrogen in different years on the EAS, and performed biogeochemical analyses (δ13C) and hydrological features in order to trace the pathways of POC associated with river plumes in coastal waters within different AO phases. The AO controls the alongshore/offshore transport of POC by regulating the pathways of plumes, highlighting the significance of the AO in the dynamics and fate of POC. The growing trend in the AO-positive phase potentially affects POC source-to-sink and ecosystem dynamics in the Arctic marginal seas.
DOI: 10.17632/gp9ff6vks3.1
title: Lysimeter and In-situ Field Experiments to Study Soil Evaporation through a Dry Soil Layer under Semi-Arid Climate

description: Field data collected in Sardon, Spain, on dry soil layer evaporation measured with a lysimeter experiment. Part of the PhD work by Balugani Enrico with Prof. Maciek Lubczynski (Twente Univesity) and Klaas Metselaar (Wageningen University). Collected during the years 2012-2016.
DOI: 10.17632/z8y3tctjc6.1
title: Supernumerary BCI: exploring the imagination of a third arm using BCI
DOI: 10.17632/z8y3tctjc6.2
title: Supernumerary BCI dataset: exploring the imagination of a third arm using BCI
DOI: 10.17632/z8y3tctjc6.3
title: Supernumerary BCI dataset: exploring the imagination of a third arm using BCI

description: Brain-computer interface (BCI) enables bodyless communication with machines or devices; this is done using the translation of the electrical activity in the brain (EEG) signals into outputs command. Motor Imagery BCI (MI-BCI) employs the amplitude changes elicited voluntarily by the mental rehearsal of physical motor actions (known as event-related de-synchronization and synchronization - ERD/ERS). MI-BCI applications focus on mental representations of jointed limbs following the human anatomy constraints (e.g., two arms in a symmetrical distribution), without any exploration or applications that include non-embodied human limbs in BCI systems, even though Rubber Hand Illusion (RHI) experiments demonstrated the human capabilities to create body transfer illusions. This dataset aims to study the feasibility of including a virtual third arm in an MI-BCI system while comparing the effectiveness of using the conventional arrows and fixation cross as a training step (Graz) against a first-person view using a human avatar (Hands). The dataset was used for two studies: an EEG analysis of the induced brain oscillatory activity elicited by the third arm using Event-Related Spectral Perturbation (ERSP); and an offline exploration of the classification of the third arm task. There were two recording sessions with two runs in each one with a resting time between them. The sessions were conducted on two separate days within one week. Ten right-handed volunteers (four women) participated in the study. We collected the EEG data using an OpenBCI 32-bit board at a sampling rate of 250 Hz. Following the 10-20 EEG placement system, eight passive gold cup electrodes were used and placed at the sensorimotor cortex. The experiment involves the execution of four different tasks in two training conditions (both performed in a VR environment). The subjects were invited to rest (RS), or to move (either imaginary or execute when possible) a specific hand: third hand (TH), left hand (LH), and right hand (RH). The Hands condition involved the presentation of a human-like avatar, whereas Graz the presentation of arrows, both following the usual BCI timing protocol (see the Figure). The users performed 20 trials of each task randomly selected with a duration of seven seconds each.
DOI: 10.17632/d3thy28yc2.1
title: Bathymetry of the southern part of the Baltic Sea in the vicinity of the Coastal Research Station (CRS) in Lubiatowo - April, 2023

description: Date of the measuring works: April 22 – 24, 2023 Format: dBASE Table, structure: ID, X, Y, Z
The coordinates of the vertices of the polygon: 17,806° E 54,831° N, 17,803° E 54,836° N, 17,853° E 54,845° N, 17,856° E 54,840° N
Coordinate system: The Polish height coordinate system Kronsztad 86 (PL-KRON86-NH) and the horizontal coordinate system WGS 84 UTM 33 (PL-UTM-33). 
Conditions during the measurements on April, 2023:
Wave direction: N-W
Wave height [m]: 0.2
Wind direction: N-W, S-W 
Wind velocity [m/s]: 2 - 7 
Grid resolution: 0,25m x 0,25m
The measurements were carried out with a multibeam Norbit Winghead i77 at a frequency of 400 kHz. During the measurements, 21 profile passes were made, each 3500 m long and spaced every 20 m. The Echo sounder was mounted centrally on the bow of the boat. 
Before measurements, the echo sounder was calibrated on the Margaret wreck. Prior to calibration and measurements, the sound velocity was measured in a water column at intervals of 0.2 m (by use of SWIFT SVP VALEPORT). RTK corrections were downloaded from Leica SmartNet, which resulted in a position accuracy of up to 2 - 5 cm. A positioning compensator Applanix OceanMaster was also used to support positioning.
DOI: 10.17632/sp28pcmsm4.1
title: LDHU3_10.1060

description: Hypothetical protein - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/thk283vyyj.1
title: LDHU3_10.1080

description: MRD1; Leishmania donovani (HU3 strain)
DOI: 10.17632/h6thnjgtv5.1
title: LDHU3_10.1030

description: Hypothetical protein - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/s6jdxfmym4.1
title: LDHU3_10.1050

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/3m9ph7j578.1
title: A meta-analysis to optimize pathogen reduction during anaerobic digestion

description: Table A1. Complete database used for the study
DOI: 10.17632/3djrv7v4dj.1
title: Expansion microscopy reveals subdomains in C. elegans germ granules

description: Confocal images
DOI: 10.17632/tc3vynggdr.1
title: Dataset for "Ammonia and greenhouse gas emissions during short-term storage of pig slurry treated by pH modification"

description: Data collected before, during and after the storage phase of the present experimental work can be found in the attached document. A reader is provided with all necessary information with abbreviation and units of measurement. 
Data shows the evolution of ammonia, carbon dioxide, methane, and nitrous oxide emissions during the 25-day storage of raw and pH modified pig slurry. Cumulative emissions of the treatments as well as physicochemical and microbiological characteristics are presented.
If necessary, calculations took place to present the data in an understandable manner. Further information can be found in the manuscript: "Ammonia and greenhouse gas emissions during short-term storage of pig slurry treated by pH modification"
DOI: 10.17632/vt89b7fgw4.1
title: Biomass Burning Enhanced the Contribution of Biogenic Sources to Sulfate Aerosol in Subtropical Cities

description: The original data of water-soluble ions, stable sulfur isotope, stable oxygen isotope, organic carbon, and elemental carbon in PM2.5 over Guangzhou were acquired by Off-line sampling and laboratory analysis. Trace gases and meteorological data in Guangzhou were acquired by online equipment.
DOI: 10.15468/dl.fvytlv
title: Occurrence Download

description: A dataset containing 7685 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaranthus powellii S.Watson"
 ]
}

 The dataset includes 7685 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013788-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-04.1980345/2361773
title: Data for EMSL Project 48666 from April 2020
DOI: 10.15468/dl.7ntahk
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aethionema retsina Phitos & Snogerup"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018192-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffv6fj
title: Occurrence Download

description: A dataset containing 14546 species occurrences available in GBIF matching the query:
{
 "and" : [
 "License is CC0 1.0",
 "TaxonKey is Berberis vulgaris L."
 ]
}

 The dataset includes 14546 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022627-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-02.1941958/2361774
title: Data for EMSL Project 48666 from February 2020