cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21942/uva.20050970.v1
title: Artistic Visual Storytelling

description: This directory contains the necessary files for the Artistic Visual Storytelling task. For a short dataset description, please, read the README.md. <br> Import note: The Artistic Visual Storytelling dataset can be used only for non-commercial academic research purposes. <br> If you use this dataset, please cite it as below: <br> Efthymiou, A.; Rudinac, S.; Kackovic, M.; Worring, M.; Wijnberg, N.M. (2023): Artistic Visual Storytelling. University of Amsterdam / Amsterdam University of Applied Sciences. Dataset. https://doi.org/10.21942/uva.20050970.v1
DOI: 10.6084/m9.figshare.22567534
title: Supplementary Material for: Ayurvedic Treatment in the Rehabilitation of Ischemic Stroke Patients in India: A Randomized Controlled Trial (RESTORE) study protocol

description: Background: In patients with ischemic stroke, motor and sensory impairments are common and are associated with functional disability. Conventional physiotherapy (CP) is the primary modality of rehabilitation for post-stroke sensorimotor dysfunction. Ayurveda is a commonly practiced alternative system of medicine that offers unique rehabilitative measures for post-stroke recovery. Hypothesis: We hypothesize that Ayurvedic rehabilitative treatment (ART) is superior to similar duration CP in improving the sensorimotor recovery of patients with ischemic stroke at 90 days after enrollment. Design: AyuRvedic TrEatment in the Rehabilitation of Ischemic STrOke Patients in India: A Randomized controllEd trial (RESTORE) is an investigator-initiated, multi-center, prospective, randomized, controlled, parallel-arm, blinded outcome assessment trial being conducted under the Indian Stroke Clinical Trial (INSTRuCT) Network across the four comprehensive stroke centers in India. Consecutive hemodynamically stable adult patients with their first acute ischemic stroke, between 1 to 3 months from stroke onset are being randomized (1:1) into two treatment groups to receive either 1 month of ART or 1 month of CP. Outcome:The primary outcome measure is the Fugl Meyer Assessment-Upper extremity for physical performance at 90 days. The secondary outcomes are the modified Rankin Scale, Barthel Index, Berg Balance and SF-36 at 90 days. The safety outcomes include a composite of irreversible morbidity and mortality. Sample Size: A sample size of 140 (70 in each group) patients with ischemic stroke will allow us to detect a minimal clinical important difference of 9.4 (standard deviation) with superiority margin of 5, an attrition rate of 10%, alpha of 5% and power of 80%. Summary:This randomised trial will systematically assess the efficacy and safety of traditional ART compared to CP. Trial registration: This trial is registered with Clinical Trial Registry - India; CTRI/2018/04/013379.
DOI: 10.6084/m9.figshare.22567534.v1
title: Supplementary Material for: Ayurvedic Treatment in the Rehabilitation of Ischemic Stroke Patients in India: A Randomized Controlled Trial (RESTORE) study protocol

description: Background: In patients with ischemic stroke, motor and sensory impairments are common and are associated with functional disability. Conventional physiotherapy (CP) is the primary modality of rehabilitation for post-stroke sensorimotor dysfunction. Ayurveda is a commonly practiced alternative system of medicine that offers unique rehabilitative measures for post-stroke recovery. Hypothesis: We hypothesize that Ayurvedic rehabilitative treatment (ART) is superior to similar duration CP in improving the sensorimotor recovery of patients with ischemic stroke at 90 days after enrollment. Design: AyuRvedic TrEatment in the Rehabilitation of Ischemic STrOke Patients in India: A Randomized controllEd trial (RESTORE) is an investigator-initiated, multi-center, prospective, randomized, controlled, parallel-arm, blinded outcome assessment trial being conducted under the Indian Stroke Clinical Trial (INSTRuCT) Network across the four comprehensive stroke centers in India. Consecutive hemodynamically stable adult patients with their first acute ischemic stroke, between 1 to 3 months from stroke onset are being randomized (1:1) into two treatment groups to receive either 1 month of ART or 1 month of CP. Outcome:The primary outcome measure is the Fugl Meyer Assessment-Upper extremity for physical performance at 90 days. The secondary outcomes are the modified Rankin Scale, Barthel Index, Berg Balance and SF-36 at 90 days. The safety outcomes include a composite of irreversible morbidity and mortality. Sample Size: A sample size of 140 (70 in each group) patients with ischemic stroke will allow us to detect a minimal clinical important difference of 9.4 (standard deviation) with superiority margin of 5, an attrition rate of 10%, alpha of 5% and power of 80%. Summary:This randomised trial will systematically assess the efficacy and safety of traditional ART compared to CP. Trial registration: This trial is registered with Clinical Trial Registry - India; CTRI/2018/04/013379.
DOI: 10.5281/zenodo.6632726
title: Supplementary data as part of the article "Comparing the reaction profiles of single-iron catalytic sites in enzymes and in reticular frameworks for methane-to-methanol oxidation" (https://doi.org/10.1016/j.xcrp.2023.101422)

description: Cartesian coordinates in the *.XYZ format for all the structures optimized at the M06-L/def2-TZVP in the reactivity study as part of the article "Comparing the reaction profiles of single-iron catalytic sites in enzymes and in reticular frameworks for methane-to-methanol oxidation" (https://doi.org/10.1016/j.xcrp.2023.101422)
DOI: 10.5281/zenodo.6632725
title: Supplementary data as part of the article "Comparing the reaction profiles of single-iron catalytic sites in enzymes and in reticular frameworks for methane-to-methanol oxidation" (https://doi.org/10.1016/j.xcrp.2023.101422)

description: Cartesian coordinates in the *.XYZ format for all the structures optimized at the M06-L/def2-TZVP in the reactivity study as part of the article "Comparing the reaction profiles of single-iron catalytic sites in enzymes and in reticular frameworks for methane-to-methanol oxidation" (https://doi.org/10.1016/j.xcrp.2023.101422)
DOI: 10.6084/m9.figshare.22574251.v1
title: Supplementary Material for: Work Experiences of the Interdisciplinary Dialysis Workforce in the United States: A Cross-Sectional Survey

description: Introduction: Suboptimal dialysis care may be in part due to staff issues such as job dissatisfaction, burnout, work overload, high staff turnover, and inconsistent training. Here, we leveraged data collected in a recent national survey to provide an initial, comprehensive description of current work experiences of U.S. dialysis care providers. Methods: We conducted a cross-sectional survey of 1240 active U.S. dialysis clinic staff members (physicians, advanced practice providers, nurse managers/clinic coordinators, nurses, social workers, dietitians, and patient care technicians), who were recruited via emails to society membership lists. Respondents were asked about a wide variety of work experiences, including job satisfaction, professional fulfillment and burnout (Stanford Professional Fulfillment Index), work culture, experiences of hostility and violence, and self-reported medical errors. Responses were summarized overall and compared by clinic role. Results: Most of the survey respondents, representing all 50 U.S. states, were aged 35-49 (58.3%) or ≥50 (23.5%), female (60.7%), and white (59.8%; 23.1% Black and 10.0% Asian); 82.1% had been in their current role for at least 1 year. Most U.S. dialysis staff responding to our survey reported being generally satisfied with their jobs (mean rating of 7.9 on 0-10 scale), but only 54.4% met criteria for professional fulfillment, and 32.8% met criteria for burnout, driven by high scores in the work exhaustion domain. Related issues, including high workloads, lack of respect (including experiences of violence and hostility), lack of autonomy, and suboptimal patient environments (in terms of both safety and patient-centeredness), were commonly reported among dialysis care providers, although their prevalence often differed by provider type. Conclusion: Our results suggest that the dialysis workforce may be at a critical point. Preventing further staff burn out, which could lead to even greater staffing shortages and worse working conditions among those who continue to provide dialysis care, is essential.
DOI: 10.6084/m9.figshare.22601569
title: Supplementary Material for: Effect of CPP-ACP added to Milk, Chewing Gum and Candy on Dental Caries: a Systematic Review

description: Casein is one of the most studied proteins with activity against dental caries. In particular, casein phosphopeptide-amorphous calcium phosphate (CPP-ACP) has shown promising remineralizing properties. In vivo evidence on the anticaries potential of CPP-ACP added to foodstuffs is elusive, nonetheless. Hence, this systematic review aimed at determining whether the use of CPP-ACP added to foodstuffs has a remineralizing or inhibitory action on dental demineralization either in vivo or in situ. The review protocol followed the PRISMA-P criteria and was registered in PROSPERO. PubMed, SCOPUS, and Web of Science databases were searched using predefined criteria, based on the PICO question; Is there an effect on dental caries upon adding CPP-ACP to milk, chewing gums, or candies? No year or language limits were applied. Article selection and data extraction were carried out independently by 2 investigators. Two hundred-ten titles were examined, 23 selected for full-text review and 16 studies included (2 in vivo, and 14 in situ). In 2 studies, CPP-ACP was added in candy, in 2 to milk and in 12 to chewing gum. The main outcomes included enamel remineralization and activity against dental biofilm. The overall quality of the evidence was classified as moderate. The available evidence suggests that CPP-ACP added to milk, chewing gum or candy has a potential remineralizing activity on tooth enamel, with some additional antibacterial activity on the dental biofilm. Further clinical studies are needed to verify if this effect is clinically significant in reducing the caries lesion incidence or to revert the demineralizing process.
DOI: 10.6084/m9.figshare.22601569.v1
title: Supplementary Material for: Effect of CPP-ACP added to Milk, Chewing Gum and Candy on Dental Caries: a Systematic Review

description: Casein is one of the most studied proteins with activity against dental caries. In particular, casein phosphopeptide-amorphous calcium phosphate (CPP-ACP) has shown promising remineralizing properties. In vivo evidence on the anticaries potential of CPP-ACP added to foodstuffs is elusive, nonetheless. Hence, this systematic review aimed at determining whether the use of CPP-ACP added to foodstuffs has a remineralizing or inhibitory action on dental demineralization either in vivo or in situ. The review protocol followed the PRISMA-P criteria and was registered in PROSPERO. PubMed, SCOPUS, and Web of Science databases were searched using predefined criteria, based on the PICO question; Is there an effect on dental caries upon adding CPP-ACP to milk, chewing gums, or candies? No year or language limits were applied. Article selection and data extraction were carried out independently by 2 investigators. Two hundred-ten titles were examined, 23 selected for full-text review and 16 studies included (2 in vivo, and 14 in situ). In 2 studies, CPP-ACP was added in candy, in 2 to milk and in 12 to chewing gum. The main outcomes included enamel remineralization and activity against dental biofilm. The overall quality of the evidence was classified as moderate. The available evidence suggests that CPP-ACP added to milk, chewing gum or candy has a potential remineralizing activity on tooth enamel, with some additional antibacterial activity on the dental biofilm. Further clinical studies are needed to verify if this effect is clinically significant in reducing the caries lesion incidence or to revert the demineralizing process.
DOI: 10.6084/m9.figshare.22346989.v1
title: Supplementary Material for: A Proposed Human Structural Brain Connectivity Matrix in the Center for Morphometric Analysis Harvard-Oxford Atlas Framework: A historical perspective and future direction for enhancing the precision of human structural connectivity with a novel neuroanatomical typology.

description: A complete structural definition of the human nervous system must include delineation of its wiring diagram (e.g., [1]). The complete formulation of the human brain circuit diagram (BCD; [2]) has been hampered by an inability to determine connections in their entirety (i.e., not only pathway stems, but also origins and terminations). From a structural point of view, a neuroanatomic formulation of the BCD should include the origins and terminations of each fiber tract as well as the topographic course of the fiber tract in three dimensions. Classic neuroanatomical studies have provided trajectory information for pathway stems and their speculative origins and terminations [3–7]. We have summarized these studies previously [7] and present them here in a macroscale-level human cerebral structural connectivity matrix. A matrix in the present context is an organizational construct that embodies anatomical knowledge about cortical areas and their connections. This is represented in relation to parcellation units according to the Harvard-Oxford Atlas neuroanatomical framework established by the Center for Morphometric Analysis at Massachusetts General Hospital in the early 2000s, which is based on the MRI volumetrics paradigm of Dr. Verne Caviness and colleagues [8]. This is a classic connectional matrix based mainly on data predating the advent of DTI tractography, which we refer to as the "pre-DTI era" human structural connectivity matrix. In addition, we present representative examples that incorporate validated structural connectivity information from non-human primates and more recent information on human structural connectivity emerging from DTI tractography studies. We refer to this as the "DTI era" human structural connectivity matrix. This newer matrix represents a work in progress and is necessarily incomplete due to the lack of validated human connectivity findings on origins and terminations as well as pathway stems. Importantly, we use a neuroanatomical typology to characterize different types of connections in the human brain, which is critical for organizing the matrices and the prospective database. Although substantial in detail, the present matrices may be assumed to be only partially complete because the sources of data relating to human fiber system organization are limited largely to inferences from gross dissections of anatomic specimens or extrapolations of pathway tracing information from non-human primate experiments [2,9,10]. These matrices, which embody a systematic description of cerebral connectivity, can be used in cognitive and clinical studies in neuroscience and, importantly, to guide research efforts for further elucidating, validating and completing the human brain circuit diagram [2].
DOI: 10.6084/m9.figshare.22643155.v1
title: Supplementary Material for: Caregiver Involvement and Concerns with Care of Residents of Assisted Living Before and During the COVID-19 Pandemic

description: Introduction Family/friend caregivers play an essential role in promoting the physical and mental health of older adults in need of care – especially during the COVID-19 pandemic and especially in assisted living (AL) homes, were resident care needs are similarly complex as in long-term care homes but fewer staffing resources and services are available. However, little research is available on caregiver involvement and concerns with care of AL residents prior to and during waves 1 and 2 of the COVID-19 pandemic. This study addressed this important knowledge gap. Methods This prospective cohort study used baseline and follow-up online surveys with primary caregivers to AL residents in Western Canada who were 65 years or older and had lived in the AL home for at least 3 months before Mar 1, 2020. Surveys assessed the following outcomes in the three months prior to and during waves 1 and 2 of the pandemic: socio-demographics, 5 ways of visiting or communicating with residents, involvement in 16 care tasks, concerns with 9 resident physical/mental health conditions, perceived lack of resident access to 7 care services, and whether caregivers felt well informed and involved with resident care. Results Based on 386 caregiver responses, in-person visits dropped significantly in wave 1 of the pandemic and so did caregiver involvement in nearly all care tasks. While these rates increased in wave 2, most did not return to pre-pandemic levels. Correspondingly, caregiver concerns (already high before the pandemic) substantially increased in wave 1 and stayed high in wave 2. These were particularly elevated among caregivers who did not feel well informed/involved with resident care. Discussion/Conclusions Restricted in-person visiting disrupted resident care and was associated with worse perceptions of resident health and wellbeing. Continued caregiver involvement in resident care and communication with caregivers even during lockdowns is key to mitigating these issues.
DOI: 10.6084/m9.figshare.23269592
title: bone_marrow_atac_correct_lsi

description: Processed data obtained from "A sandbox for prediction and integration of DNA, RNA, and proteins in single cells" (Luecken et al., 2021), donor s1d1, only ATAC. Replaced the original ATAC_LSI_red field by the corrected one as given in the jupyter notebooks of the open problems competition 2021
DOI: 10.6084/m9.figshare.23269592.v1
title: bone_marrow_atac_correct_lsi

description: Processed data obtained from "A sandbox for prediction and integration of DNA, RNA, and proteins in single cells" (Luecken et al., 2021), donor s1d1, only ATAC. Replaced the original ATAC_LSI_red field by the corrected one as given in the jupyter notebooks of the open problems competition 2021
DOI: 10.6084/m9.figshare.22632673
title: Supplementary Material for: Real-time fluorescence imaging to identify cholangiocarcinoma in the extrahepatic biliary tree using an enzyme-activatable probe

description: Introduction Complete resection is the only possible treatment for cholangiocarcinoma in the extrahepatic biliary tree (eCCA), although current imaging modalities are limited in their ability to accurately diagnose longitudinal spread. We aimed to develop fluorescence imaging techniques for real-time identification of eCCA using an enzyme-activatable probe, which emits fluorescence immediately after activation by a cancer-specific enzyme. Methods Using lysates and small tissue fragments collected from surgically resected specimens, we selected the most specific probe for eCCA from among 800 enzyme-activatable probes. The selected probe was directly sprayed onto resected specimens and fluorescence images were acquired; these images were evaluated for diagnostic accuracy. We also comprehensively searched for enzymes that could activate the probe, then compared their expression levels in cancer and non-cancer tissues. Results Analyses of 19 samples (four cancer lysates, seven non-cancer lysates, and eight bile samples) and 54 tissue fragments (13 cancer tissues and 41 non-cancer tissues) revealed that PM-2MeSiR was the most specific fluorophore for eCCA. Fluorescence images of seven patients were obtained; these images enabled rapid identification of cancerous regions, which closely matched histopathology findings in four patients. Puromycin-sensitive aminopeptidase was identified as the enzyme that might activate the probe, and its expression was upregulated in eCCA. Discussion/Conclusion Fluorescence imaging with PM-2MeSiR, which may be activated by puromycin-sensitive aminopeptidase, yielded generally high accuracy. This technique may be useful for real-time identification of the spread of eCCA during surgery and endoscopic examinations.
DOI: 10.17909/qacq-9285
title: SDSSJ1652-NIRSpec-IFU-data
DOI: 10.6084/m9.figshare.22701412
title: Supporting information.docx

description: Supporting file describing the content of 'The design and development of woven textile solar panels - Supporting data - Samples.xlsx' and 'The design and development of woven textile solar panels - Supporting data - Large panel.xlsx'.
DOI: 10.6084/m9.figshare.22701412.v1
title: Supporting information.docx

description: Supporting file describing the content of 'The design and development of woven textile solar panels - Supporting data - Samples.xlsx' and 'The design and development of woven textile solar panels - Supporting data - Large panel.xlsx'.
DOI: 10.6084/m9.figshare.22701415
title: The design and development of woven textile solar panels - Supporting data - Samples.xlsx

description: Contains data related to the characterisation of solar cells soldered onto wires, solar E-filaments, solar E-yarns, and solar E-filament/E-yarns woven into a textile structure.
DOI: 10.6084/m9.figshare.22701418
title: The design and development of woven textile solar panels - Supporting data - Large panel.xlsx

description: <br> Contains data relating to the characterisation of a large area textile solar panel.
DOI: 10.5281/zenodo.7987514
title: Cropland area database by country circa 2020

description: This dataset describes a new estimate of cropland area circa the year 2020, with global coverage, with data for 221 countries and territories and 34 regional aggregates. Data are generated from geospatial information on the agreement-disagreement characteristics of six open access high-resolution cropland maps derived from remote sensing (ESRI LU/LC, FROM-GLC Plus, GLAD, GLC-FCS30, Globeland30 and Worldcover). This cropland area mapping (CAM) dataset provides information on: i) mean cropland area and its uncertainty; ii) cropland area by six distinct cropland agreement classes; and iii) cropland area by specific combinations of underlying land cover product. The file contains data on the mean cropland area obtained from 6 high resolution cropland layers and the corresponding standard error and the area for six simple cropland agreement classes are reported. Cropland area from the 6 high resolution land cover layers. And area of detailed agreement classes describing the cropland area for each combination of the land cover layers. For additional information a lookup table is included for the detailed agreement data, here you find an overview of the corresponding land cover layers that map cropland for each detailed agreement class. This dataset was generated from the cropland agreement map (Tubiello, 2022), previously used to estimate cropland areas across the world (Tubiello, 2023). The data was further used in an analysis of global cropland area in comparison with FAOSTAT cropland data. Tubiello, Francesco N., Conchedda, Giulia, Casse, Leon, Hao, Pengyu, Chen, Zhongxin, De Santis, Giorgia, Fritz, Steffen, & Muchoney, Douglas. (2022). High resolution cropland agreement map (30 m) circa 2020 (v1.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.7244124 Tubiello, F.N., Conchedda, G., Casse, L. et al. Measuring the world’s cropland area. Nat Food 4, 30–32 (2023). https://doi.org/10.1038/s43016-022-00667-9
DOI: 10.48567/w937-ze91
title:  Year of Polar Prediction in the South Hemisphere: Special Observing Period Radiosondes from External Contributors, 2022.
DOI: 10.5281/zenodo.7982433
title: raw characterization data for the article "Synthesis of Propargyl Silanes from Terminal Alkynes via a Migratory Sonogashira Reaction"

description: Raw NMR, IR and MS data for the article "Synthesis of Propargyl Silanes from Terminal Alkynes via a Mi-gratory Sonogashira Reaction" published in Chemical Communications, DOI: https://doi.org/10.1039/D3CC01847D The number of the folders either correspond to compounds numbers in the article or the name of the folder is self-describing. All details concerning conditions and equipment for measurements can be found in the supporting information of the article.