cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1094784.v3
title: R scripts for SIBER analysis of benthic Antarctic shallow water ecosystem affected by glacier retreat

description: R scripts for SIBER analysis and Graphs These are the R scripts used for submitted paper: Benthic trophic interactions in an Antarctic shallow water ecosystem affected by recent glacier retreat (2014) F. Pasotti, L. A. Saravia, M. De Troch, M. S. Tarantelli, R. Sahade, and A. Vanreusel. Description of files: Siber.Rmd: the file used for the analysis and figures of the original data. simul_ln_iso_data.r: generation of simulated data pasottiSim.dat: Simulated data Siber_w_sim_data.Rmd: sligtly modified R script to run with simulated data BUGS_models.r/SEA_fitting.r: updated functions for SIBER analysis not included in the package
DOI: 10.6084/m9.figshare.1094784.v4
title: R scripts for SIBER analysis of Benthic trophic interactions and glacier retreat

description: R scripts for SIBER analysis and Graphs These are the R scripts used for submitted paper: Benthic trophic interactions in an Antarctic shallow water ecosystem affected by recent glacier retreat (2014) F. Pasotti, L. A. Saravia, M. De Troch, M. S. Tarantelli, R. Sahade, and A. Vanreusel. Description of files: Siber.Rmd: the file used for the analysis and figures of the original data. simul_ln_iso_data.r: generation of simulated data pasottiSim.dat: Simulated data Siber_w_sim_data.Rmd: sligtly modified R script to run with simulated data BUGS_models.r/SEA_fitting.r: updated functions for SIBER analysis not included in the package
DOI: 10.6084/m9.figshare.1094784.v6
title: R scripts and data for SIBER analysis of Benthic trophic interactions and glacier retreat

description: R scripts for SIBER analysis and Graphs These are the R and Rmd (R markdown) scripts used in the paper: Pasotti F, Saravia LA, De Troch M, Tarantelli MS, Sahade R, Vanreusel A. <strong>Benthic trophic interactions in an Antarctic shallow water ecosystem affected by recent glacier retreat</strong>. PLoS One. 2015;10: e0141742. doi:10.1371/journal. pone.0141742 <strong>Description of main files:</strong> Siber.Rmd: R markdown file used for the analysis and figures of the complete original data. Siber_wout_MT2-poly.Rmd: Small modifications to analyze a data set without some outliers of the same data. Pasotti.dat: original data used in the analysis <strong>Accesory files:</strong> BUGS_models.r/SEA_fitting.r: updated functions for SIBER analysis not included in the package Test simul_ln_iso_data.r: generation of simulated data pasottiSim.dat: Simulated data Siber_w_sim_data.Rmd: sligtly modified R script to run with simulated data
DOI: 10.6084/m9.figshare.1094645
title: Tardigrades

description: Images from the reproducible scince class research.
DOI: 10.6084/m9.figshare.1094642
title: Unedited Gephi file - set of 44 dissertations on electronic literature 2002-2013 with links to creative works cited

description: This is the "clean", unedited Gephi file I used to visualise the conncetions between 44 dissertations about electronic literature and the creative works they cite. This file is perfect if you want to download it, load it into Gephi and try visualising the data yourself. I provide a tutorial here: http://jilltxt.net/?p=3730 For more information, see my paper in ebr: electronic book review: http://electronicbookreview.com/thread/electropoetics/analyzing The data is from the ELMCIP Electronic Literature Knowledge Base (http://elmcip.net/category/publication-type/book-dissertation) and includes all dissertations published between 2002 and 2013 that we had registered in the Knowledge Base as of March 2014, with certain exceptions as explained in the full paper. A complete list of included dissertations can be found at the end of the paper. Because I did not initially export years of publication and titles from the Knowledge Base, only some of the creative works have publication year and title information. This file is shared under a CC-BY licence (http://creativecommons.org/licenses/by/4.0/).
DOI: 10.6084/m9.figshare.1094645.v1
title: Tardigrades

description: Images from the reproducible scince class research.
DOI: 10.6084/m9.figshare.1094642.v1
title: Unedited Gephi file - set of 44 dissertations on electronic literature 2002-2013 with links to creative works cited

description: This is the "clean", unedited Gephi file I used to visualise the conncetions between 44 dissertations about electronic literature and the creative works they cite. This file is perfect if you want to download it, load it into Gephi and try visualising the data yourself. I provide a tutorial here: http://jilltxt.net/?p=3730 For more information, see my paper in ebr: electronic book review: http://electronicbookreview.com/thread/electropoetics/analyzing The data is from the ELMCIP Electronic Literature Knowledge Base (http://elmcip.net/category/publication-type/book-dissertation) and includes all dissertations published between 2002 and 2013 that we had registered in the Knowledge Base as of March 2014, with certain exceptions as explained in the full paper. A complete list of included dissertations can be found at the end of the paper. Because I did not initially export years of publication and titles from the Knowledge Base, only some of the creative works have publication year and title information. This file is shared under a CC-BY licence (http://creativecommons.org/licenses/by/4.0/).
DOI: 10.6084/m9.figshare.1094619
title: Islands in ice: isolated populations of <i>Cryptopygus sverdrupi</i> (Collembola) among nunataks in the Sør Rondane Mountains, Dronning Maud Land, Antarctica

description: Molecular variation among Antarctic Collembola has been well appreciated over the last decade. The majority of studies have focussed on the Transantarctic Mountains and Antarctic Peninsula, and more recently Dronning Maud Land, which now accounts for all known continental species. Within most species, mean mitochondrial DNA (mtDNA) sequence divergence has not been more than around 2%, but in 2010 far greater levels of infraspecific sequence divergence (9.2–10.9%) were discovered in three species: <i>Friesea grisea</i> (10.2%), <i>Gressittacantha terranova</i> (10.4%) and <i>Cryptopygus antarcticus</i> (9.2%). Here, we present the first phylogeographic study on <i>Cryptopygus sverdrupi</i> from Dronning Maud Land. We found that mtDNA <i>COI</i> and <i>16S</i> haplotypes clustered into two lineages with a mean <i>COI</i> sequence divergence of around 7.1%. The mixing of haplotypes between nearby nunataks separated by up to 15 km revealed support for ongoing (but rare) dispersal, although a single site, the most geographically isolated (by 40–58 km) was also the most genetically divergent. These levels of sequence divergence indicate persistence of biota throughout the Miocene and Pliocene isolated in glacial refugia. Expanding sampling of <i>C. sverdrupi</i> from additional ice-free refugia throughout Dronning Maud Land will be important to further our understanding of the evolutionary processes that have influenced the Antarctic continent, its landscape and biota.
DOI: 10.6084/m9.figshare.1094619.v2
title: Islands in ice: isolated populations of <i>Cryptopygus sverdrupi</i> (Collembola) among nunataks in the Sør Rondane Mountains, Dronning Maud Land, Antarctica

description: Molecular variation among Antarctic Collembola has been well appreciated over the last decade. The majority of studies have focussed on the Transantarctic Mountains and Antarctic Peninsula, and more recently Dronning Maud Land, which now accounts for all known continental species. Within most species, mean mitochondrial DNA (mtDNA) sequence divergence has not been more than around 2%, but in 2010 far greater levels of infraspecific sequence divergence (9.2–10.9%) were discovered in three species: <i>Friesea grisea</i> (10.2%), <i>Gressittacantha terranova</i> (10.4%) and <i>Cryptopygus antarcticus</i> (9.2%). Here, we present the first phylogeographic study on <i>Cryptopygus sverdrupi</i> from Dronning Maud Land. We found that mtDNA <i>COI</i> and <i>16S</i> haplotypes clustered into two lineages with a mean <i>COI</i> sequence divergence of around 7.1%. The mixing of haplotypes between nearby nunataks separated by up to 15 km revealed support for ongoing (but rare) dispersal, although a single site, the most geographically isolated (by 40–58 km) was also the most genetically divergent. These levels of sequence divergence indicate persistence of biota throughout the Miocene and Pliocene isolated in glacial refugia. Expanding sampling of <i>C. sverdrupi</i> from additional ice-free refugia throughout Dronning Maud Land will be important to further our understanding of the evolutionary processes that have influenced the Antarctic continent, its landscape and biota.
DOI: 10.6084/m9.figshare.1094619.v1
title: Islands in ice: isolated populations of <i>Cryptopygus sverdrupi</i> (Collembola) among nunataks in the Sør Rondane Mountains, Dronning Maud Land, Antarctica

description: Molecular variation among Antarctic Collembola has been well appreciated over the last decade. The majority of studies have focussed on the Transantarctic Mountains and Antarctic Peninsula, and more recently Dronning Maud Land, which now accounts for all known continental species. Within most species, mean mitochondrial DNA (mtDNA) sequence divergence has not been more than around 2%, but in 2010 far greater levels of infraspecific sequence divergence (9.2–10.9%) were discovered in three species: <i>Friesea grisea</i> (10.2%), <i>Gressittacantha terranova</i> (10.4%) and <i>Cryptopygus antarcticus</i> (9.2%). Here, we present the first phylogeographic study on <i>Cryptopygus sverdrupi</i> from Dronning Maud Land. We found that mtDNA <i>COI</i> and <i>16S</i> haplotypes clustered into two lineages with a mean <i>COI</i> sequence divergence of around 7.1%. The mixing of haplotypes between nearby nunataks separated by up to 15 km revealed support for ongoing (but rare) dispersal, although a single site, the most geographically isolated (by 40–58 km) was also the most genetically divergent. These levels of sequence divergence indicate persistence of biota throughout the Miocene and Pliocene isolated in glacial refugia. Expanding sampling of <i>C. sverdrupi</i> from additional ice-free refugia throughout Dronning Maud Land will be important to further our understanding of the evolutionary processes that have influenced the Antarctic continent, its landscape and biota.
DOI: 10.6084/m9.figshare.1094547
title: Catherine The Faithful Queen Dowager

description: 4. Catherine The Faithful Queen Dowager Author / Authors : Charles E.J. Moulton<br>Page no. 56 – 68<br>Discipline : History/Swedish History<br>Script/language : Roman/English Category : Research paper Keywords: Swedish history, Renaissance women, Arranged marriages, 16th century royalty.
DOI: 10.6084/m9.figshare.1094546
title: Phonological change of vowel lengt

description: <br>Author / Authors : Reza Heidarizadi Page no. 50 - 55 Discipline : Persian Linguistics/language Script/language : Roman/English Category : Research paper Keywords: Farsi vowels, vowel length, Compensatory lengthening
DOI: 10.6084/m9.figshare.1094544
title: Who I Am – Feminism Revisited: An Overview

description: Who I Am – Feminism Revisited: An Overview Author / Authors : Puja Chakraberty Page no.1 - 8 Discipline : English literature/Gender Studies/ Cultural studies Script/language : English (Roman) Category : Research paper Keywords: feminism, invincible, significance, rebirth, new woman, development, tribute, daredevil.
DOI: 10.6084/m9.figshare.1094547.v1
title: Catherine The Faithful Queen Dowager

description: 4. Catherine The Faithful Queen Dowager Author / Authors : Charles E.J. Moulton<br>Page no. 56 – 68<br>Discipline : History/Swedish History<br>Script/language : Roman/English Category : Research paper Keywords: Swedish history, Renaissance women, Arranged marriages, 16th century royalty.
DOI: 10.6084/m9.figshare.1094546.v1
title: Phonological change of vowel lengt

description: <br>Author / Authors : Reza Heidarizadi Page no. 50 - 55 Discipline : Persian Linguistics/language Script/language : Roman/English Category : Research paper Keywords: Farsi vowels, vowel length, Compensatory lengthening
DOI: 10.6084/m9.figshare.1094512
title: Gaussian Job Archive for C27H34Cl2N2O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094544.v1
title: Who I Am – Feminism Revisited: An Overview

description: Who I Am – Feminism Revisited: An Overview Author / Authors : Puja Chakraberty Page no.1 - 8 Discipline : English literature/Gender Studies/ Cultural studies Script/language : English (Roman) Category : Research paper Keywords: feminism, invincible, significance, rebirth, new woman, development, tribute, daredevil.
DOI: 10.6084/m9.figshare.1094512.v1
title: Gaussian Job Archive for C27H34Cl2N2O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094511
title: Gaussian Job Archive for C27H33ClN2O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094511.v1
title: Gaussian Job Archive for C27H33ClN2O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094479
title: Gaussian Job Archive for C14H16O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094479.v1
title: Gaussian Job Archive for C14H16O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094438
title: Data from: The Crowded Sea: Incorporating Multiple Marine Activities in Conservation Plans can Significantly Alter Spatial Priorities

description: These data sets present the data in shapefile format underlying figures in: Mazor T, Possingham H.P., Edelist D, Brokovich E, Kark, S (2014) The Crowded Sea: Incorporating Multiple Marine Activities in Conservation Plans can Significantly Alter Spatial Priorities. PLOS ONE. All these data are provided in shapefile format using the Israel_TM_Grid. <strong>Species Richness (Fig. 2)</strong> - This data presents the number of biodiversity features present in 1 x 1 km grid units (planning units) covering the territorial waters of Israel's Mediterranean Sea. These include 166 biodiversity features - (153 fishes, 2 turtles, 1 cetacean), and 10 geomorphologic features (Fig. 2a; see Table S1 for a list of species and features included in this study). <strong>Commercial fishing effort (Fig.2)</strong> - These data present the commercial fishing effort of 4 major fishing gear types (trawlers, longliners, purse seiners, entangling nets) used in Israle's mediterranean territorial waters within 1 x 1km planning units. These data present both biomass (ton) and cost (US$) - found in attributes table. <strong>Selection Frequency Conservation Zone (Fig.4)</strong> - These data show the percentage of times (column "perc" from the attributes table), each 1km2 planning unit was selected to be in a conservation zone (no-take zone) by Marxan when run 1000 times. These present data for each planning sceario; Simple Planning, Basic Zoning, Intermediate Zoning and Complex Zoning. <strong>Best Solutions (Fig. 5)</strong> - These data show the best solutions in Marxan when run 1000 times. This solutions presents the lowest score (meets tagets for the lowest cost). From the attributes table - each number depicts a zone. These present data for each planning sceario; Simple Planning, Basic Zoning, Intermediate Zoning and Complex Zoning. <strong>Selection Frequency of Economic, Benthic Protection and Exploration Zone (Fig.6)</strong> - These data show the percentage of times (column "perc" from the attributes table), each 1km2 planning unit was selected to be in a particular zone by Marxan when run 1000 times. These present data for each planning sceario; Basic Zoning, Intermediate Zoning and Complex Zoning.
DOI: 10.6084/m9.figshare.1094438.v1
title: Data from: The Crowded Sea: Incorporating Multiple Marine Activities in Conservation Plans can Significantly Alter Spatial Priorities

description: These data sets present the data in shapefile format underlying figures in: Mazor T, Possingham H.P., Edelist D, Brokovich E, Kark, S (2014) The Crowded Sea: Incorporating Multiple Marine Activities in Conservation Plans can Significantly Alter Spatial Priorities. PLOS ONE. All these data are provided in shapefile format using the Israel_TM_Grid. <strong>Species Richness (Fig. 2)</strong> - This data presents the number of biodiversity features present in 1 x 1 km grid units (planning units) covering the territorial waters of Israel's Mediterranean Sea. These include 166 biodiversity features - (153 fishes, 2 turtles, 1 cetacean), and 10 geomorphologic features (Fig. 2a; see Table S1 for a list of species and features included in this study). <strong>Commercial fishing effort (Fig.2)</strong> - These data present the commercial fishing effort of 4 major fishing gear types (trawlers, longliners, purse seiners, entangling nets) used in Israle's mediterranean territorial waters within 1 x 1km planning units. These data present both biomass (ton) and cost (US$) - found in attributes table. <strong>Selection Frequency Conservation Zone (Fig.4)</strong> - These data show the percentage of times (column "perc" from the attributes table), each 1km2 planning unit was selected to be in a conservation zone (no-take zone) by Marxan when run 1000 times. These present data for each planning sceario; Simple Planning, Basic Zoning, Intermediate Zoning and Complex Zoning. <strong>Best Solutions (Fig. 5)</strong> - These data show the best solutions in Marxan when run 1000 times. This solutions presents the lowest score (meets tagets for the lowest cost). From the attributes table - each number depicts a zone. These present data for each planning sceario; Simple Planning, Basic Zoning, Intermediate Zoning and Complex Zoning. <strong>Selection Frequency of Economic, Benthic Protection and Exploration Zone (Fig.6)</strong> - These data show the percentage of times (column "perc" from the attributes table), each 1km2 planning unit was selected to be in a particular zone by Marxan when run 1000 times. These present data for each planning sceario; Basic Zoning, Intermediate Zoning and Complex Zoning.
DOI: 10.6084/m9.figshare.1094396
title: Gaussian Job Archive for C27H33ClN2O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094397
title: Gaussian Job Archive for C27H33ClN2O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094397.v1
title: Gaussian Job Archive for C27H33ClN2O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094396.v1
title: Gaussian Job Archive for C27H33ClN2O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094368
title: Gaussian Job Archive for C14H16O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094368.v1
title: Gaussian Job Archive for C14H16O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094357
title: Gaussian Job Archive for C18H15NO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094357.v1
title: Gaussian Job Archive for C18H15NO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094344
title: Gaussian Job Archive for C27H33ClN2O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094342
title: Gaussian Job Archive for C14H16O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094356
title: Gaussian Job Archive for C18H15NO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094343
title: Gaussian Job Archive for C14H16O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094344.v1
title: Gaussian Job Archive for C27H33ClN2O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094356.v1
title: Gaussian Job Archive for C18H15NO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094341
title: Gaussian Job Archive for C15H14O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094342.v1
title: Gaussian Job Archive for C14H16O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094339
title: Analysis of completed US phase 3 clinical trials (n=5051) registered at ClinicalTrials.gov (first received: 01/01/2002 to 01/01/2014)

description: "The majority of US phase 3 trials were retrospectively registered. Only three out of ten studies that were completed before January 2011 have results available, data was submitted to ClinicalTrials.gov within12 months by 34% of the investigators." (1) Analysis of unpublished studies follows (infographics). (2) <strong>Current number of completed US phase 3 trials (registered between 2002-2014)</strong> <strong><em>1. Clinical trials with results and without results</em></strong> Intervention = drug | URL: http://goo.gl/s0JciJ<br>Intervention = biological | URL: http://goo.gl/ARQFnJ <strong><em>2. Clinical trials with results</em></strong> Intervention = drug | URL: http://goo.gl/s0JciJ<br>Intervention = biological | URL: http://goo.gl/ARQFnJ <strong>References</strong> 1. Ramirez JH, Palacios M. Re: The US requirement to deposit trial data within a year is unworkable. March 17, 2014. URL: http://www.bmj.com/node/753103 2. Ramirez, Jorge H (2014): Infographics: Unpublished US phase 3 clinical trials (2002-2012) completed before Jan 2011 = 50.8%. figshare.<br>http://dx.doi.org/10.6084/m9.figshare.1121675Retrieved 23:05, Jul 30, 2014 (GMT) This database complies with the terms and conditions of ClinicalTrials.gov (http://clinicaltrials.gov/ct2/about-site/terms-conditions) and the WHO ICTRP (http://www.who.int/ictrp/search/download/en/) for using downloaded data.
DOI: 10.6084/m9.figshare.1094340
title: Gaussian Job Archive for C15H14O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094341.v1
title: Gaussian Job Archive for C15H14O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1094338
title: Expression of concern about tamsulosin: over three quarters of human studies are unpublished

description: Further details are available in the following URLs: - http://www.bmj.com/content/347/bmj.f6492 - http://www.bmj.com/node/758233 - http://www.bmj.com/node/759360 - http://www.bmj.com/node/755022 Database complies with the terms and conditions of ClinicalTrials.gov (available at:http://clinicaltrials.gov/ct2/about-site/terms-conditions) and the WHO ICTRP (available at: http://www.who.int/ictrp/search/download/en/) for using downloaded data.