cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19189091
title: GPS RINEX data, pressure data, water level data and Space weather data files for the manuscript: Detecting the January 15, 2022 Hunga Tonga volcanic eruption (SW Pacific) high up in the sky through “ionospheric resonance

description: GNSS RINEX data, pressure data, water level data and Space weather data files used in the manuscript: Detecting the January 15, 2022 Hunga Tonga volcanic eruption (SW Pacific) high up in the sky through “ionospheric resonance” <b></b>
DOI: 10.5281/zenodo.6123953
title: Dataset related to article "Gamma Knife Radiosurgery for the Treatment of Trigeminal Neuralgia in Patients with Multiple Sclerosis: A Single-Center Retrospective Study and Literature Review" "

description: This record contains raw data related to article “Gamma Knife Radiosurgery for the Treatment of Trigeminal Neuralgia in Patients with Multiple Sclerosis: A Single-Center Retrospective Study and Literature Review" <strong>Objective: </strong> Trigeminal neuralgia (TN) in patients with multiple sclerosis (MS) is a challenging condition to manage that is treated with Gamma Knife radiosurgery (GKRS). The aim of this report is to assess the safety, efficacy, and durability of GKRS for the treatment of TN in patients with MS. Our findings are compared with those of the existing literature and discussed. <strong>Methods: </strong> We retrospectively reviewed all patients at our institution who underwent GKRS for the treatment of TN secondary to MS and had 1 or more years of follow-up. Preoperative and postoperative pain intensities and facial numbness were evaluated with the Barrow Neurological Institute scores. Durability of successful pain relief was statistically evaluated with Kaplan-Meier analysis. The prognostic role of perioperative factors was investigated and analyzed using Cox proportional hazards regression. <strong>Results: </strong> There were 29 patients with MS-TN who underwent GKRS at our institution. Two patients underwent bilateral treatment. Four patients underwent repeat GKRS for pain recurrence. The median period of follow-up assessment was 33 months. Rates of reasonable pain reduction at 1, 3, and 5 years were 70%, 57%, and 57% respectively. All patients who underwent repeat GKRS had durable pain reduction. No prognostic factor for successful pain reduction was found. <strong>Conclusions: </strong> Our study shows that GKRS for the treatment of TN secondary to MS is a safe and effective procedure in controlling pain in the short term but often fails to provide long-term pain control. GKRS can be safely repeated to prolong the time of pain reduction.
DOI: 10.5281/zenodo.6124037
title: msd-errors - Data for the LLZO figure

description: Data for the figure showing the diffusion and Arrhenius plots for a short simulation of LLZO. <br><br>Created using showyourwork from this GitHub repo.<br>
DOI: 10.5281/zenodo.6123952
title: Dataset related to article "Gamma Knife Radiosurgery for the Treatment of Trigeminal Neuralgia in Patients with Multiple Sclerosis: A Single-Center Retrospective Study and Literature Review" "

description: This record contains raw data related to article “Gamma Knife Radiosurgery for the Treatment of Trigeminal Neuralgia in Patients with Multiple Sclerosis: A Single-Center Retrospective Study and Literature Review" <strong>Objective: </strong> Trigeminal neuralgia (TN) in patients with multiple sclerosis (MS) is a challenging condition to manage that is treated with Gamma Knife radiosurgery (GKRS). The aim of this report is to assess the safety, efficacy, and durability of GKRS for the treatment of TN in patients with MS. Our findings are compared with those of the existing literature and discussed. <strong>Methods: </strong> We retrospectively reviewed all patients at our institution who underwent GKRS for the treatment of TN secondary to MS and had 1 or more years of follow-up. Preoperative and postoperative pain intensities and facial numbness were evaluated with the Barrow Neurological Institute scores. Durability of successful pain relief was statistically evaluated with Kaplan-Meier analysis. The prognostic role of perioperative factors was investigated and analyzed using Cox proportional hazards regression. <strong>Results: </strong> There were 29 patients with MS-TN who underwent GKRS at our institution. Two patients underwent bilateral treatment. Four patients underwent repeat GKRS for pain recurrence. The median period of follow-up assessment was 33 months. Rates of reasonable pain reduction at 1, 3, and 5 years were 70%, 57%, and 57% respectively. All patients who underwent repeat GKRS had durable pain reduction. No prognostic factor for successful pain reduction was found. <strong>Conclusions: </strong> Our study shows that GKRS for the treatment of TN secondary to MS is a safe and effective procedure in controlling pain in the short term but often fails to provide long-term pain control. GKRS can be safely repeated to prolong the time of pain reduction.
DOI: 10.5281/zenodo.5109741
title: Online Resources for Strullu-Derrien et al - The 330–320 Million-Year-Old Tranchée des Malécots (Chaudefonds-sur-Layon, South of the Armorican Massif, France): a Rare Geoheritage Site Containing In Situ Palaeobotanical Remains

description: This repository contains the following files associate with "The 330–320 Million-Year-Old Tranchée des Malécots (Chaudefonds-sur-Layon, South of the Armorican Massif, France): a Rare Geoheritage Site Containing In Situ Palaeobotanical Remains" by Christine Strullu-Derrien, Alan RT Spencer, Christopher J Cleal and Victor O. Leshyk. <strong>Online Resource 1</strong> Model data as a .zip archive (301.5MB) containing .obj/.mtl and texture files for each 3D reconstruction (Models #1-4, whole site reconstruction, detailed reconstruction of the trench, and model of the mine site). <strong>Online Resource 2</strong> Video animation showing whole site 3D model (.mp4 | 37.7MB), with quick fly-through of the Tranchée des Malécots showing exposed rock and bedding of the SW wall. <strong>Online Resource 3</strong> Video animation showing 3D Model #1 (.mp4 | 35.1MB). <strong>Online Resource 4</strong> Video animation showing 3D Model #2 (.mp4 | 83.5MB). <strong>Online Resource 5</strong> Video animation showing 3D Model #3 (.mp4 | 45.3MB). <strong>Online Resource 6</strong> Video animation showing 3D Model #4 (.mp4 | 65.8MB). <strong>Online Resource 7</strong> Video animation showing 3D model of the Malécots mine headframe (.mp4 | 14.9.0MB).
DOI: 10.5281/zenodo.5109740
title: Online Resources for Strullu-Derrien et al - The 330–320 Million-Year-Old Tranchée des Malécots (Chaudefonds-sur-Layon, South of the Armorican Massif, France): a Rare Geoheritage Site Containing In Situ Palaeobotanical Remains

description: This repository contains the following files associate with "The 330–320 Million-Year-Old Tranchée des Malécots (Chaudefonds-sur-Layon, South of the Armorican Massif, France): a Rare Geoheritage Site Containing In Situ Palaeobotanical Remains" by Christine Strullu-Derrien, Alan RT Spencer, Christopher J Cleal and Victor O. Leshyk. <strong>Online Resource 1</strong> Model data as a .zip archive (301.5MB) containing .obj/.mtl and texture files for each 3D reconstruction (Models #1-4, whole site reconstruction, detailed reconstruction of the trench, and model of the mine site). <strong>Online Resource 2</strong> Video animation showing whole site 3D model (.mp4 | 37.7MB), with quick fly-through of the Tranchée des Malécots showing exposed rock and bedding of the SW wall. <strong>Online Resource 3</strong> Video animation showing 3D Model #1 (.mp4 | 35.1MB). <strong>Online Resource 4</strong> Video animation showing 3D Model #2 (.mp4 | 83.5MB). <strong>Online Resource 5</strong> Video animation showing 3D Model #3 (.mp4 | 45.3MB). <strong>Online Resource 6</strong> Video animation showing 3D Model #4 (.mp4 | 65.8MB). <strong>Online Resource 7</strong> Video animation showing 3D model of the Malécots mine headframe (.mp4 | 14.9.0MB).
DOI: 10.5281/zenodo.6123911
title: Whole genome sequence data of Lactiplantibacillus plantarum IMI507027

description: The present data files are the annotation output from the whole genome sequencing of the strain Lactiplantibacillus plantarum IMI507027.
DOI: 10.5281/zenodo.6123910
title: Whole genome sequence data of Lactiplantibacillus plantarum IMI507027

description: The present data files are the annotation output from the whole genome sequencing of the strain Lactiplantibacillus plantarum IMI507027.
DOI: 10.5281/zenodo.5947125
title: Data used to evaluate ORBITS: Optimal Repair-Based Inconsistency-Tolerant Semantics

description: This dataset provides the input files that were used in the evaluation of the ORBITS system (Optimal Repair-Based Inconsistency-Tolerant Semantics, https://github.com/bourgaux/orbits). A detailed description is available in a technical report on arXiv (https://arxiv.org/abs/2202.07980). <strong>Content:</strong> Folders <em>cqapri_benchmark</em>, <em>food_inspection_benchmark</em>, and <em>physicians_benchmark</em> contain JSON files of conflict graphs and candidate queries and their causes.<br> These files are named using the following pattern: files of candidate answers and their causes are named &lt;database&gt;_&lt;query&gt;_answers_causes.json, and conflict graphs are named &lt;database&gt;_conflictGraph_&lt;priority relation&gt;.json where &lt;priority relation&gt; says whether the priority relation is score-structured (prio_score) or not (prio_non_score) and the probability (p&lt;proba&gt;) or number of scores (n&lt;number&gt;) used to build the priority relation. Folder <em>original_datasets_and_queries</em> contains the Food Inspection and Physicians datasets used to generate files from <em>food_inspection_benchmark</em> and <em>physicians_benchmark</em>.<br> Files from <em>cqapri_benchmark</em> have been generated from the CQAPri benchmark available at https://lahdak.lri.fr/CQAPri/CQAPri.php.<br> In all cases, we use ProvSQL (https://github.com/PierreSenellart/provsql) to build conflict graphs and causes from the datasets.
DOI: 10.5281/zenodo.5946827
title: Data used to evaluate ORBITS: Optimal Repair-Based Inconsistency-Tolerant Semantics

description: This dataset provides the input files that were used in the evaluation of the ORBITS system (Optimal Repair-Based Inconsistency-Tolerant Semantics, https://github.com/bourgaux/orbits). A detailed description is available in a technical report on arXiv (https://arxiv.org/abs/2202.07980). <strong>Content:</strong> Folders <em>cqapri_benchmark</em>, <em>food_inspection_benchmark</em>, and <em>physicians_benchmark</em> contain JSON files of conflict graphs and candidate queries and their causes.<br> These files are named using the following pattern: files of candidate answers and their causes are named &lt;database&gt;_&lt;query&gt;_answers_causes.json, and conflict graphs are named &lt;database&gt;_conflictGraph_&lt;priority relation&gt;.json where &lt;priority relation&gt; says whether the priority relation is score-structured (prio_score) or not (prio_non_score) and the probability (p&lt;proba&gt;) or number of scores (n&lt;number&gt;) used to build the priority relation. Folder <em>original_datasets_and_queries</em> contains the Food Inspection and Physicians datasets used to generate files from <em>food_inspection_benchmark</em> and <em>physicians_benchmark</em>.<br> Files from <em>cqapri_benchmark</em> have been generated from the CQAPri benchmark available at https://lahdak.lri.fr/CQAPri/CQAPri.php.<br> In all cases, we use ProvSQL (https://github.com/PierreSenellart/provsql) to build conflict graphs and causes from the datasets.
DOI: 10.5281/zenodo.6124101
title: msd-errors - Data for the LLZO figure

description: Data for the figure showing the diffusion and Arrhenius plots for a short simulation of LLZO. <br><br>Created using showyourwork from this GitHub repo.<br>
DOI: 10.6084/m9.figshare.15124267
title: Cellular therapy for myocardial ischemia using a temperature-responsive biodegradable injectable polymer system with adipose-derived stem cells

description: Adipose-derived stem cell (AdSC) has been attracting attention as a convenient stem cell source. Not only AdSC can differentiate into various tissue cells, but it can also accelerate cell proliferation, anti-inflammation, and angiogenesis by secreting paracrine factors. Studies have demonstrated AdSC treatment of ischemic heart. However, an improvement in the remaining live AdSCs administered at the injected site while maintaining paracrine factor secretion is desired to achieve effective regenerative medicine. We previously reported the ABA-type tri-block copolymer of poly(ɛ-caprolactone-<i>co</i>-glycolic acid) and poly(ethylene glycol) (tri-PCG), exhibiting temperature-responsive sol-to-gel transition as biodegradable injectable polymer (IP) systems. Moreover, we recently reported that the biodegradable temperature-triggered chemically cross-linked gelation systems exhibited longer gel state durations using tri-PCG attaching acryloyl groups and a polythiol derivative. In this study, we explored this IP-mediated AdSC delivery system. We investigated the cell viability, mRNA expression, and cytokine secretion of AdSCs cultured in the physical or chemical IP hydrogels. Both of these IP hydrogels retained a certain number of viable cells, and RT-PCR and ELISA analyses revealed that mRNA expression and secretion of vascular endothelial growth factor of the AdSCs cultured in the chemical hydrogel were higher than the physical hydrogel. Moreover, AdSCs injected with the chemical hydrogel into ischemic heart model mice showed longer retention of the cells at the injected site and recovery from the ischemic condition. The results mean that the IP system is a promising candidate for a stem cell delivery system that exhibits the recovery of cardiac function for myocardial infarction treatment.
DOI: 10.6084/m9.figshare.15124267.v2
title: Cellular therapy for myocardial ischemia using a temperature-responsive biodegradable injectable polymer system with adipose-derived stem cells

description: Adipose-derived stem cell (AdSC) has been attracting attention as a convenient stem cell source. Not only AdSC can differentiate into various tissue cells, but it can also accelerate cell proliferation, anti-inflammation, and angiogenesis by secreting paracrine factors. Studies have demonstrated AdSC treatment of ischemic heart. However, an improvement in the remaining live AdSCs administered at the injected site while maintaining paracrine factor secretion is desired to achieve effective regenerative medicine. We previously reported the ABA-type tri-block copolymer of poly(ɛ-caprolactone-<i>co</i>-glycolic acid) and poly(ethylene glycol) (tri-PCG), exhibiting temperature-responsive sol-to-gel transition as biodegradable injectable polymer (IP) systems. Moreover, we recently reported that the biodegradable temperature-triggered chemically cross-linked gelation systems exhibited longer gel state durations using tri-PCG attaching acryloyl groups and a polythiol derivative. In this study, we explored this IP-mediated AdSC delivery system. We investigated the cell viability, mRNA expression, and cytokine secretion of AdSCs cultured in the physical or chemical IP hydrogels. Both of these IP hydrogels retained a certain number of viable cells, and RT-PCR and ELISA analyses revealed that mRNA expression and secretion of vascular endothelial growth factor of the AdSCs cultured in the chemical hydrogel were higher than the physical hydrogel. Moreover, AdSCs injected with the chemical hydrogel into ischemic heart model mice showed longer retention of the cells at the injected site and recovery from the ischemic condition. The results mean that the IP system is a promising candidate for a stem cell delivery system that exhibits the recovery of cardiac function for myocardial infarction treatment.
DOI: 10.6084/m9.figshare.14113246
title: Global snapshot of the effects of the COVID-19 pandemic on the research activities of materials scientists between Spring and Autumn 2020

description: We conducted a global survey on the effects of the COVID-19 pandemic on the research activities of materials scientists by distributing a questionnaire on 9 October 2020 with a response deadline of 23 October 2020. The questions covered issues such as access to labs, effectiveness of online conferences, and effects on doctoral students for the period covering the first lockdowns until the relaxation of restrictions in late September 2020 in many countries. The survey also included online interviews with eminent materials scientists who shared their local experiences during this period. The interviews were compiled as a series of audio conversations for <i>The STAM Podcast</i> that is freely available worldwide. Our findings included that the majority of institutes were not prepared for such a crisis; researchers in China, Japan, and Singapore were able to resume research much quicker – for example after approximately one month in Japan – than their counterparts in the US and Europe after the first lockdowns; researchers adapted to using virtual teleconferencing to maintain contact with colleagues; and doctoral students were the hardest hit by the pandemic with deep concerns about completing their research and career prospects. We hope that the analysis from this survey will enable the global materials science community to learn from each other’s experiences and move forward from the unprecedented circumstances created by the pandemic.
DOI: 10.6084/m9.figshare.14113246.v1
title: Global snapshot of the effects of the COVID-19 pandemic on the research activities of materials scientists between Spring and Autumn 2020

description: We conducted a global survey on the effects of the COVID-19 pandemic on the research activities of materials scientists by distributing a questionnaire on 9 October 2020 with a response deadline of 23 October 2020. The questions covered issues such as access to labs, effectiveness of online conferences, and effects on doctoral students for the period covering the first lockdowns until the relaxation of restrictions in late September 2020 in many countries. The survey also included online interviews with eminent materials scientists who shared their local experiences during this period. The interviews were compiled as a series of audio conversations for <i>The STAM Podcast</i> that is freely available worldwide. Our findings included that the majority of institutes were not prepared for such a crisis; researchers in China, Japan, and Singapore were able to resume research much quicker – for example after approximately one month in Japan – than their counterparts in the US and Europe after the first lockdowns; researchers adapted to using virtual teleconferencing to maintain contact with colleagues; and doctoral students were the hardest hit by the pandemic with deep concerns about completing their research and career prospects. We hope that the analysis from this survey will enable the global materials science community to learn from each other’s experiences and move forward from the unprecedented circumstances created by the pandemic.
DOI: 10.6084/m9.figshare.14394500
title: Temperature-dependent electronic structure of bixbyite α-Mn<sub>2</sub>O<sub>3</sub> and the importance of a subtle structural change on oxygen electrocatalysis

description: Bixbyite α-Mn<sub>2</sub>O<sub>3</sub> is an inexpensive Earth-abundant mineral that can be used to drive both oxygen evolution (OER) and oxygen reduction reactions (ORR) in alkaline conditions. It possesses a subtle orthorhombic → cubic phase change near room temperature that suppresses Jahn–Teller distortions and presents a unique opportunity to study how atomic structure affects the electronic structure and catalytic activity at a temperature range that is easily accessible in OER/ORR experiments. Previously, we observed that heat-treated α-Mn<sub>2</sub>O<sub>3</sub> had a better performance as a bifunctional catalyst in the oxygen evolution (OER) and oxygen reduction reactions (ORR) (<i>Dalton Trans</i>. 2016, 45, 18,494–18,501). We hypothesized that heat-treatment pinned the material into a more electrochemically active cubic phase. In this manuscript, we use high-resolution X-ray diffraction to collect the temperature-dependent structures of α-Mn<sub>2</sub>O<sub>3</sub>, and then input them into ab initio calculations. The electronic structure calculations indicate that the orthorhombic → cubic phase transition causes the Mn 3<i>d</i> and O 2<i>p</i> bands to overlap and mix covalently, transforming α-Mn<sub>2</sub>O<sub>3</sub> from a semiconductor to a semimetal. This subtle change in structure also modifies Mn-O-Mn bond distances, which may improve the activity of the material in oxygen electrochemistry. OER and ORR experiments were performed using the same electrode at various temperatures. They show a jump in the exchange current density near the phase change temperature, demonstrating the higher activity of the cubic phase.
DOI: 10.6084/m9.figshare.15124267.v1
title: Cellular therapy for myocardial ischemia using a temperature-responsive biodegradable injectable polymer system with adipose-derived stem cells

description: Adipose-derived stem cell (AdSC) has been attracting attention as a convenient stem cell source. Not only AdSC can differentiate into various tissue cells, but it can also accelerate cell proliferation, anti-inflammation, and angiogenesis by secreting paracrine factors. Studies have demonstrated AdSC treatment of ischemic heart. However, an improvement in the remaining live AdSCs administered at the injected site while maintaining paracrine factor secretion is desired to achieve effective regenerative medicine. We previously reported the ABA-type tri-block copolymer of poly(ɛ-caprolactone-<i>co</i>-glycolic acid) and poly(ethylene glycol) (tri-PCG), exhibiting temperature-responsive sol-to-gel transition as biodegradable injectable polymer (IP) systems. Moreover, we recently reported that the biodegradable temperature-triggered chemically cross-linked gelation systems exhibited longer gel state durations using tri-PCG attaching acryloyl groups and a polythiol derivative. In this study, we explored this IP-mediated AdSC delivery system. We investigated the cell viability, mRNA expression, and cytokine secretion of AdSCs cultured in the physical or chemical IP hydrogels. Both of these IP hydrogels retained a certain number of viable cells, and RT-PCR and ELISA analyses revealed that mRNA expression and secretion of vascular endothelial growth factor of the AdSCs cultured in the chemical hydrogel were higher than the physical hydrogel. Moreover, AdSCs injected with the chemical hydrogel into ischemic heart model mice showed longer retention of the cells at the injected site and recovery from the ischemic condition. The results mean that the IP system is a promising candidate for a stem cell delivery system that exhibits the recovery of cardiac function for myocardial infarction treatment.