cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/4h73e-bkq78
title: Vibrio Stationary Phase

description: Vibrio cholerae, deep stationary phase, 37°C, pH 7.5
description: <strong>Tilt Series Date:</strong> 2014-01-29</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> TRH7000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> MKW1383 grown 28 hours in LB pH 7.5 at 37°C</p>
  aba2014-01-29-22_slicer10017.jpg: Vibrio cholerae .  vesicle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-01-29-22/rawdata/</p>VibriostationaryLBmanualblot0022.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-01-29-22/rawdata/VibriostationaryLBmanualblot0022.mrc"
        > <i class="download icon"></i> Download </a></p>

        VibriostationaryLBmanualblot0022_full.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-01-29-22/3dimage_38174/VibriostationaryLBmanualblot0022_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/snew2-8kh17
title: R. sphaeroides Cryosections

description: Strain JPA 543 cryosections
description: <strong>Tilt Series Date:</strong> 2013-07-26</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Mark Ladinsky, Judy Armitage</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-07-26-49/rawdata/</p>rhodobactertestb0062.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-07-26-49/rawdata/rhodobactertestb0062.mrc"
        > <i class="download icon"></i> Download </a></p>

        rhodobactertestb0062_full.rec,  Reconstruction (Pixel Size 0.52 nm), 2.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-07-26-49/3dimage_29019/rhodobactertestb0062_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/r2302-1r583
title: NR1769pKM101conjNR1769drop

description: Skinny E. coli NR1769 with Fplasmid conjugating to NR1769 on a drop for 30min Au grids
description: <strong>Tilt Series Date:</strong> 2014-10-27</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> NR1769 pKM101</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Christian Baron</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-27-8/rawdata/</p>NR1769pKM101plusNR1769drop10005.mrc,  Tilt Series (Pixel Size 0.63 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        NR1769pKM101plusNR1769drop10005_full.rec,  Reconstruction (Pixel Size 0.0 nm), 980.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/fwqzw-rsw10
title: Brucella WT

description: Brucella abortus WT
description: <strong>Tilt Series Date:</strong> 2014-04-10</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Brucella abortus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Sean Crosson</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-10-2/rawdata/</p>BrucellaWT0024.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-10-2/rawdata/BrucellaWT0024.mrc"
        > <i class="download icon"></i> Download </a></p>

        BrucellaWT0024_part121_7.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/g7rp9-wd591
title: 2014Apr13deltarem_27Cplant

description: grow on pure agar plate (just 15% agar, add bacterium drop on plant's root, 27C overnight, take plant for high pressure freeze and take some bacterium for cryo em tomography
description: <strong>Tilt Series Date:</strong> 2014-04-13</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
  etl2014-04-13-42_slicer9838.jpg: Unknown appendage .  Agrobacterium tumefaciens
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-04-13-42/rawdata/</p>rem_plant30006.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-04-13-42/rawdata/rem_plant30006.mrc"
        > <i class="download icon"></i> Download </a></p>

        rem_plant30006_full.rec,  Reconstruction (Pixel Size 1.92 nm), 534.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/csr5s-gsp88
title: B subtilis bMD204

description: mreB-40aa-sfGFP  sfGFP-11aa-mbl::spec  ΔponA::cat"dual-tagged" strain, where mreB is C-terminally tagged and includes a 40 aa linker, while mbl is N-terminally tagged and uses an 11 aa linker.
description: <strong>Tilt Series Date:</strong> 2013-11-15</p>
<strong>Data Taken By:</strong> Matt Swulius</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> bMD204</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Ethan Garner and Mike Dion</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2013-11-15-6/rawdata/</p>111510_bs2040006.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2013-11-15-6/rawdata/111510_bs2040006.mrc"
        > <i class="download icon"></i> Download </a></p>

        111510_bs2040006_part121_1.rec,  Reconstruction (Pixel Size 1.92 nm), 712.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.7ad76c
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Andinobates dorisswansonae"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047163-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vm9v49
title: Occurrence Download

description: A dataset containing 6960 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Barbarea barbarea brachycarpa, Barbarea barbarea longisiliquosa, Barbarea ceretana, Barbarea croatica, Barbarea hirsuta, Barbarea hispanica, Barbarea iberica, Barbarea intermedia pyrenaica, Barbarea kayseri, Barbarea lepuznica, Barbarea linnaei, Barbarea lyrata, Barbarea macrophylla, Barbarea praecox vicina, Barbarea pseudostricta, Barbarea pyrenaica, Barbarea rivularis, Barbarea rivularis, Barbarea rupestris, Barbarea sibirica, Barbarea sicula, Barbarea stolonifera, Barbarea stricta, Barbarea sylvestris, Barbarea taurica, Barbarea vicina, Barbarea vulgaris hirsuta, Barbarea vulgaris plena, Barbarea vulgaris stolonifera, Barbarea vulgaris arcuata, Barbarea vulgaris arcuata, Barbarea vulgaris arcuata, Barbarea vulgaris arcuata, Barbarea vulgaris europaea, Barbarea vulgaris lepuznica, Barbarea vulgaris macrophylla, Barbarea vulgaris pyrenaica, Barbarea vulgaris rivularis, Barbarea vulgaris rivularis, Barbarea vulgaris sibirica, Barbarea vulgaris sylvestris, Barbarea vulgaris taurica, Barbarea vulgaris vulgaris, Barbarea vulgaris arcuata, Barbarea vulgaris arcuata, Barbarea vulgaris arcuata, Barbarea vulgaris brachycarpa, Barbarea vulgaris doellii, Barbarea vulgaris gracilis, Barbarea vulgaris hirsuta)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 6960 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047162-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/0dk2z-xcq76
title: Vibrio pH 7.5

description: Vibrio cholerae, stationary phase, pH 7.5, 37°C
description: <strong>Tilt Series Date:</strong> 2013-12-18</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> TRH7000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> MKW1383 grown overnight in LB, pH 7.5 at 37°C</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-12-18-21/rawdata/</p>VibriopH7setB0015.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-12-18-21/rawdata/VibriopH7setB0015.mrc"
        > <i class="download icon"></i> Download </a></p>

        VibriopH7setB0015_full.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/z84pndp9r7
title: ANEXOS TFM CARMEN CASTILLO

description: Anexos del TFM con autoría perteneciente a Carmen Castillo Bermejo
DOI: 10.17632/z84pndp9r7.1
title: ANEXOS TFM CARMEN CASTILLO

description: Anexos del TFM con autoría perteneciente a Carmen Castillo Bermejo
DOI: 10.22002/mfg93-e1497
title: drp1

description: purified drp1
description: <strong>Tilt Series Date:</strong> 2013-09-10</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Drp1</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> David Chan</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-10-31/rawdata/</p>drp1_275_8defocus0031.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        drp1_275_8defocus0031_part61_2.rec,  Reconstruction (Pixel Size 1.56 nm), 267.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/wf39f6sfwc
title: Galectin-3 and Hepatocyte Growth Factor Activator Inhibitor Type 2: Potential Biomarkers for Early Prediction of Post-Infectious Bronchiolitis Obliterans

description: Serum proteins, including cytokines, chemokines, growth factors, and acute-phase proteins, play critical roles in regulating immune responses, inflammation, and tissue repair during infections. Quantitative antibody microarray technology enables high-throughput, multiplexed detection of dozens to hundreds of proteins simultaneously from minimal sample volumes. This approach provides a comprehensive snapshot of the host immune response by measuring protein expression levels with high sensitivity and specificity.Here,using quantitative antibody microarrays, we analyzed serum samples from patients with adenovirus pneumonia and the control,and the results showed that 13 proteins with statistically significant differences in expression between the BO group and the NBO group, as well as between the BO group and the Ctrl group.
DOI: 10.15468/dl.h9xc7j
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "TaxonKey is Hackelia amethystina"
 ]
}

 The dataset includes 108 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047164-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/wf39f6sfwc.1
title: Galectin-3 and Hepatocyte Growth Factor Activator Inhibitor Type 2: Potential Biomarkers for Early Prediction of Post-Infectious Bronchiolitis Obliterans

description: Serum proteins, including cytokines, chemokines, growth factors, and acute-phase proteins, play critical roles in regulating immune responses, inflammation, and tissue repair during infections. Quantitative antibody microarray technology enables high-throughput, multiplexed detection of dozens to hundreds of proteins simultaneously from minimal sample volumes. This approach provides a comprehensive snapshot of the host immune response by measuring protein expression levels with high sensitivity and specificity.Here,using quantitative antibody microarrays, we analyzed serum samples from patients with adenovirus pneumonia and the control,and the results showed that 13 proteins with statistically significant differences in expression between the BO group and the NBO group, as well as between the BO group and the Ctrl group.
DOI: 10.22002/700ky-w5k26
title: Bacillus subtilis ponA mutant

description: JLG639    pbpF::Em pbpG::Km ponA::Sp
description: <strong>Tilt Series Date:</strong> 2013-08-03</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> MJ007, ponA null</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 19500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Polara, UCSFtomo</p>
<strong>Collaborators and Roles:</strong> Javi and Kit Pogliano</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulating bacteria</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-08-03-32/rawdata/</p>bs6390032.mrc,  Tilt Series (Pixel Size 0.6 nm), 2.9 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        bs6390032_full.rec,  Reconstruction (Pixel Size 2.4 nm), 712.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/pfgyxdvkb4
title: Scaling 3D layer-to-layer angle interlock woven reinforcements

description: A Matlab script for calculating the weave parameters that deliver equivalent 3D layer-to-layer angle interlock woven reinforcement configurations. Equivalent configurations are different geometrically, but composites based on such reinforcements have very similar effective elastic properties.
DOI: 10.17632/pfgyxdvkb4.1
title: Scaling 3D layer-to-layer angle interlock woven reinforcements

description: A Matlab script for calculating the weave parameters that deliver equivalent 3D layer-to-layer angle interlock woven reinforcement configurations. Equivalent configurations are different geometrically, but composites based on such reinforcements have very similar effective elastic properties.
DOI: 10.22002/8b5np-vap48
title: CCWT+200ug/ml chloramphenicol

description: Raw data files of CCWT+200ug/ml chloramphenicol
description: <strong>Tilt Series Date:</strong> 2013-10-28</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
  psa2013-10-28-13_slicer6821.jpg: S-layer membrane psa2013-10-28-13_slicer6830.jpg: Nested vesicle psa2013-10-28-13_slicer6831.jpg: filament psa2013-10-28-13_slicer6832.jpg: filament
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2013-10-28-13/rawdata/</p>atlas20004.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2013-10-28-13/rawdata/atlas20004.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas20004_full.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/gy3dcghdbr
title: Replication package for "Fertility Policy and Household Labor Supply: Evidence from the Universal Two-Child Policy in China"

description: This dataset provides the replication package for the paper “Fertility Policy and Household Labor Supply: Evidence from the Universal Two-Child Policy in China.” 
The package includes all Stata do-files and datasets required to reproduce the empirical results reported in the manuscript.