cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23641/asha.9765164
title: Initiating topic with and without aphasia (Leaman & Edmonds, 2019)

description: <b>Purpose: </b>The ability to initiate new topics of conversation is a basic skill integral to communicative independence and agency that is susceptible to breakdown in aphasia (Barnes, Candlin, & Ferguson, 2013), yet this discourse skill has received little research attention. Healthy adults (HAs) follow 3 established patterns of structural organization to cue the conversation partner when an utterance is intended to initiate a new topic (Schegloff & Sacks, 1973; Svennevig, 1999). In addition, speakers have the option to use these mechanisms of topic initiation (TI) individually or in conjunction with one another. Occasionally, speakers do not follow these conversational macrostructure expectations, in which case TI occurs abruptly, referred to as a noncoherent TI (NC-TI; Mentis & Prutting, 1991). Understanding how TI is disrupted by aphasia requires foundational knowledge regarding the relative use/combined use of TI mechanisms and NC-TI in HAs and persons with aphasia (PWAs). The purpose of this study is to investigate how PWAs and their conversation partners initiate new topics of conversation and to determine the relationship between the number of TI methods used and communicative success (CS) in persons with mild aphasia (PWA-Mild) and persons with moderate and severe aphasia (PWA-Mod/Sev).<b>Method: </b>Six PWA-Mild and 4 PWA-Mod/Sev engaged in 15-min unstructured conversations with different HA partners. Utterances were coded for types of TI used by both partners and were evaluated for CS using a 4-point scale (Leaman & Edmonds, 2019) for PWAs.<b>Results/Implications:</b> PWAs used NC-TI with a much greater frequency than HAs who never used NC-TI. The rate of NC-TI was associated with increased severity of aphasia. HAs and PWA-Mild used cohesion most often as the method for TI, while PWA-Mod/Sev used it least often. CS was moderately positively correlated with the number of methods of TI used in PWA-Mod/Sev. However, no such correlation existed for PWA-Mild; this group achieved a high degree of CS on TI utterances, independent of the number of methods of TI used. Findings include the clinical implication suggesting PWA-Mod/Sev may benefit from simultaneous use of TI mechanisms to achieve better CS during conversation.<br><b>Supplemental Material S1. </b>Partner groups: methods of topic initiation, types of cohesion, number of concurrent methods. <br>Leaman, M. C., & Edmonds, L. A. (2019). “By the way”… how persons with aphasia and their communication partners initiate new topics of conversation. <i>American Journal of Speech-Language Pathology</i>. Advance online publication. https://doi.org/10.1044/2019_AJSLP-CAC48-18-0198<br><b>Publisher Note: </b>This article is part of the Special Issue: Select Papers From the 48th Clinical Aphasiology Conference.
DOI: 10.23641/asha.9765164.v1
title: Initiating topic with and without aphasia (Leaman & Edmonds, 2019)

description: <b>Purpose: </b>The ability to initiate new topics of conversation is a basic skill integral to communicative independence and agency that is susceptible to breakdown in aphasia (Barnes, Candlin, & Ferguson, 2013), yet this discourse skill has received little research attention. Healthy adults (HAs) follow 3 established patterns of structural organization to cue the conversation partner when an utterance is intended to initiate a new topic (Schegloff & Sacks, 1973; Svennevig, 1999). In addition, speakers have the option to use these mechanisms of topic initiation (TI) individually or in conjunction with one another. Occasionally, speakers do not follow these conversational macrostructure expectations, in which case TI occurs abruptly, referred to as a noncoherent TI (NC-TI; Mentis & Prutting, 1991). Understanding how TI is disrupted by aphasia requires foundational knowledge regarding the relative use/combined use of TI mechanisms and NC-TI in HAs and persons with aphasia (PWAs). The purpose of this study is to investigate how PWAs and their conversation partners initiate new topics of conversation and to determine the relationship between the number of TI methods used and communicative success (CS) in persons with mild aphasia (PWA-Mild) and persons with moderate and severe aphasia (PWA-Mod/Sev).<b>Method: </b>Six PWA-Mild and 4 PWA-Mod/Sev engaged in 15-min unstructured conversations with different HA partners. Utterances were coded for types of TI used by both partners and were evaluated for CS using a 4-point scale (Leaman & Edmonds, 2019) for PWAs.<b>Results/Implications:</b> PWAs used NC-TI with a much greater frequency than HAs who never used NC-TI. The rate of NC-TI was associated with increased severity of aphasia. HAs and PWA-Mild used cohesion most often as the method for TI, while PWA-Mod/Sev used it least often. CS was moderately positively correlated with the number of methods of TI used in PWA-Mod/Sev. However, no such correlation existed for PWA-Mild; this group achieved a high degree of CS on TI utterances, independent of the number of methods of TI used. Findings include the clinical implication suggesting PWA-Mod/Sev may benefit from simultaneous use of TI mechanisms to achieve better CS during conversation.<br><b>Supplemental Material S1. </b>Partner groups: methods of topic initiation, types of cohesion, number of concurrent methods. <br>Leaman, M. C., & Edmonds, L. A. (2019). “By the way”… how persons with aphasia and their communication partners initiate new topics of conversation. <i>American Journal of Speech-Language Pathology</i>. Advance online publication. https://doi.org/10.1044/2019_AJSLP-CAC48-18-0198<br><b>Publisher Note: </b>This article is part of the Special Issue: Select Papers From the 48th Clinical Aphasiology Conference.
DOI: 10.6084/m9.figshare.9765158
title: nies.FNN.co2.flux.1990.2017.zip

description: An update to the previous estimate<br>
DOI: 10.6084/m9.figshare.9765158.v1
title: nies.FNN.co2.flux.1990.2017.zip

description: An update to the previous estimate<br>
DOI: 10.6084/m9.figshare.9765203.v2
title: PubMed.RData

description: Journal list in PubMed used to analysis the life cycle of the journal.
DOI: 10.6084/m9.figshare.9765203.v4
title: PubMed dataset formed the basis for all of the analyses reported in the manuscript

description: PubMed dataset formed the basis for all of the analyses reported in the manuscript.
DOI: 10.6084/m9.figshare.9765203.v3
title: PubMed journal list

description: Journal list in PubMed used to analysis the life cycle of the journal.
DOI: 10.23641/asha.9765107
title: Evaluating the contribution of executive functions (Obermeyer et al., 2019)

description: <b>Purpose: </b>The purpose of this study was to determine the degree to which the executive functions of attention switching and inhibition predicted performance on language subtests from the Temple Assessment of Language and (Verbal) Short-Term Memory in Aphasia (TALSA; N. Martin, Minkina, Kohen, & Kalinyak-Fliszar, 2018) across 3 interval conditions (no delay, 5-s delay, and 5-s filled delay), which was designed to add a memory and executive load to language tasks.<b>Method: </b>This study was a post hoc experimental design. Participants included 27 people with aphasia who were administered 5 subtests from the TALSA (Naming, Word Repetition, Nonword Repetition, Category Judgment, and Rhyming Judgment), which were selected to evaluate input and output levels of processing in the 3 interval conditions listed above. Three executive tasks were administered to evaluate inhibition (Simon and Flanker tasks) and attention switching (number–letter shifting).<b>Results: </b>Independent variables were proportion correct on each TALSA task in 3 separate time conditions, and predictor variables were efficiency on the Simon task and number–letter shifting task. Linear regression modeling was completed, which revealed that inhibition was a significant predictor of proportion correct for Word Repetition and Category Judgment in the 5-s filled interval condition.<b>Conclusions: </b>Our findings indicate that inhibition plays a role in completing tasks that require lexical and/or semantic processing in cognitively demanding conditions. Attention switching was not a significant predictor for any task. These results are an important step toward creating methods to evaluate executive skills in the context of language production.<br><b>Supplemental Material S1. </b>Control demographic data. <b><br></b><b>Supplemental Material S2. </b>Supplemental Material S2. Average control (<i>n</i> = 5) performance on temple assessment of language and (verbal) short term memory tasks.<b><br></b><b>Supplemental Material S3. </b>Means and standard deviations of reaction time for executive function measures in control participants (<i>n</i> = 5).<br><br>Obermeyer, J., Schlesinger, J., & Martin, N. (2019). Evaluating the contribution of executive functions to language tasks in cognitively demanding contexts. <i>American Journal of Speech-Language Pathology</i>. Advance online publication. https://doi.org/10.1044/2019_AJSLP-CAC48-18-0216<br><b>Publisher Note: </b>This article is part of the Special Issue: Select Papers From the 48th Clinical Aphasiology Conference.<br>
DOI: 10.6084/m9.figshare.9765083
title: Dataset for: Evidence for the Origin of the Binaural Interaction Component of the Auditory Brainstem Response

description: The binaural interaction component (BIC) represents the mismatch between auditory brainstem responses (ABR) obtained with binaural stimulation and the sum of ABRs obtained with monaural left and right stimulation. It is generally assumed that the BIC reflects binaural integration. Its potential use as a diagnostic tool, however, is hampered by the lack of direct evidence about its origin. While an origin at the initial site of binaural integration seems likely, there is no general agreement on the contribution of the two primary candidate nuclei, the lateral and medial superior olives (LSO and MSO, respectively). Here, we recorded local field potentials (LFP) and responses of units in the LSO and MSO of Mongolian gerbils (<i>Meriones unguiculatus</i>), presenting clicks with an interaural time or level difference (ITD and ILD, respectively), while simultaneously recording ABR. We determined the BIC from the ABR and, importantly, from LFP and responses of units in the LSO and MSO. If stimulus-induced changes in the ABR-derived BIC have their source in the LSO and/or MSO, we expect coherent changes in the unit-derived and the ABR-derived BIC. We find that BIC obtained from LSO units exhibit the same ITD and ILD dependence as the ABR-derived BIC. Neither BIC obtained from MSO units nor LFP-derived BIC recorded in either LSO or MSO did. The data thus strongly suggest that it is the activity of LSO units in the gerbil that is decisive for the generation of the ABR-derived BIC, determining its properties.
DOI: 10.6084/m9.figshare.9764996
title: R.zip

description: Code for our manuscript<br>
DOI: 10.6084/m9.figshare.9764990
title: Forest plant assemblages and trait datasets

description: Three matrices available :1) Site description and habitat conditions, a list of plots studied with sites, forest continuity (recent or ancient site), geological substrate, and the seven environmental parameters assessed.2) Plant assemblages data, the percent cover of each species within all plots used in this study.3) Trait data, the raw trait data for all species recorded into the studied plots.
DOI: 10.6084/m9.figshare.9764996.v1
title: R.zip

description: Code for our manuscript<br>
DOI: 10.6084/m9.figshare.9764975
title: DL1777 cell and nucleoid mesh_MW.mat

description: MATLAB file containing Oufti software generated cell (phase contrast) and nucleoid (DAPI/'object') meshes for DL1777. <br>Data for 4 biological repeats are concatenated.Biological Repeat 1 = frames 1 -72Biological Repeat 2 = frames 73 - 141Biological Repeat 3 = frames 142 - 213<br>Biological Repeat 4 = frames 214 - 283
DOI: 10.6084/m9.figshare.9764981
title: DL4129 cell and nucleoid mesh_MW.mat

description: MATLAB file containing Oufti software generated cell (phase contrast) and nucleoid (DAPI/'object') meshes for DL4129. <br>Data for 4 biological repeats are concatenated.Biological Repeat 1 = frames 1 -70Biological Repeat 2 = frames 71 - 166Biological Repeat 3 = frames 167 - 236<br>Biological Repeat 4 = frames 237 - 341
DOI: 10.6084/m9.figshare.9764984
title: DL2859 cell and nucleoid mesh_MW.mat

description: MATLAB file containing Oufti software generated cell (phase contrast) and nucleoid (DAPI/'object') meshes for DL2859. <br>Data for 4 biological repeats are concatenated.Biological Repeat 1 = frames 1 -70Biological Repeat 2 = frames 71 - 160Biological Repeat 3 = frames 161 - 260<br>Biological Repeat 4 = frames 261 - 415<br>
DOI: 10.6084/m9.figshare.9764978
title: DL4127 cell and nucleoid mesh_MW.mat

description: MATLAB file containing Oufti software generated cell (phase contrast) and nucleoid (DAPI/'object') meshes for DL4127. <br>Data for 4 biological repeats are concatenated.Biological Repeat 1 = frames 1 -70Biological Repeat 2 = frames 71 - 150Biological Repeat 3 = frames 151 - 226<br>Biological Repeat 4 = frames 227 - 296
DOI: 10.6084/m9.figshare.9764969
title: DL4128 cell and nucleoid mesh_MW.mat

description: MATLAB file containing Oufti software generated cell (phase contrast) and nucleoid (DAPI/'object') meshes for DL4128. <br>Data for 4 biological repeats are concatenated.Biological Repeat 1 = frames 1 -70Biological Repeat 2 = frames 71 - 150Biological Repeat 3 = frames 151 - 220<br>Biological Repeat 4 = frames 220 - 290
DOI: 10.6084/m9.figshare.9764972
title: DL4130 cell and nucleoid mesh_MW.mat

description: MATLAB file containing Oufti software generated cell (phase contrast) and nucleoid (DAPI/'object') meshes for DL4130. <br>Data for 4 biological repeats are concatenated.Biological Repeat 1 = frames 1 -79Biological Repeat 2 = frames 80 - 130Biological Repeat 3 = frames 131 - 200<br>Biological Repeat 4 = frames 201 - 270
DOI: 10.6084/m9.figshare.9764975.v1
title: DL1777 cell and nucleoid mesh_MW.mat

description: MATLAB file containing Oufti software generated cell (phase contrast) and nucleoid (DAPI/'object') meshes for DL1777. <br>Data for 4 biological repeats are concatenated.Biological Repeat 1 = frames 1 -72Biological Repeat 2 = frames 73 - 141Biological Repeat 3 = frames 142 - 213<br>Biological Repeat 4 = frames 214 - 283
DOI: 10.6084/m9.figshare.9764978.v1
title: DL4127 cell and nucleoid mesh_MW.mat

description: MATLAB file containing Oufti software generated cell (phase contrast) and nucleoid (DAPI/'object') meshes for DL4127. <br>Data for 4 biological repeats are concatenated.Biological Repeat 1 = frames 1 -70Biological Repeat 2 = frames 71 - 150Biological Repeat 3 = frames 151 - 226<br>Biological Repeat 4 = frames 227 - 296
DOI: 10.6084/m9.figshare.9764972.v1
title: DL4130 cell and nucleoid mesh_MW.mat

description: MATLAB file containing Oufti software generated cell (phase contrast) and nucleoid (DAPI/'object') meshes for DL4130. <br>Data for 4 biological repeats are concatenated.Biological Repeat 1 = frames 1 -79Biological Repeat 2 = frames 80 - 130Biological Repeat 3 = frames 131 - 200<br>Biological Repeat 4 = frames 201 - 270
DOI: 10.6084/m9.figshare.9764966
title: DL2151 cell and nucleoid mesh_MW.mat

description: MATLAB file containing Oufti software generated cell (phase contrast) and nucleoid (DAPI/'object') meshes for DL2151. <br>Data for 4 biological repeats are concatenated.Biological Repeat 1 = frames 1 -73Biological Repeat 2 = frames 74 - 143Biological Repeat 3 = frames 144 - 213<br>Biological Repeat 4 = frames 214 - 283
DOI: 10.6084/m9.figshare.9764963
title: DL2874 cell and nucleoid mesh_MW.mat

description: MATLAB file containing Oufti software generated cell (phase contrast) and nucleoid (DAPI/'object') meshes for DL2874. <br>Data for 4 biological repeats are concatenated.Biological Repeat 1 = frames 1 -71Biological Repeat 2 = frames 72 - 141Biological Repeat 3 = frames 142 - 216<br>Biological Repeat 4 = frames 217 - 286
DOI: 10.25919/5f46a0bc3f9f1
title: Parkes observations for project PX500 semester 2020APRS_04

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries. As the observing time has been purchased this proposal (and the related PX501) does not require TAC grading. The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first, relating to this proposal, will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period. The second type of time will be scheduled in shorter blocks and the data archived with a 10 year embargo.
DOI: 10.6084/m9.figshare.9764942
title: MACCROBAT

description: This ZIP-compressed file contains 200 source documents (in plain text, on sentence per line) and 200 annotation documents (in <i>brat </i>standoff format). Documents are named using PubMed document IDs, e.g. "15939911.txt" contains text from the document "A young man with palpitations and Ebstein's anomaly of the tricuspid valve" by Marcu and Donohue. Text is from PubMed Central full-text documents but has been edited to include only clinical case report details. All annotations were created manually.<br>"MACCROBAT2020" is the second release of this dataset, following "MACCROBAT2018". The consistency and format of annotations has been improved in the newest version.
DOI: 10.6084/m9.figshare.9764966.v1
title: DL2151 cell and nucleoid mesh_MW.mat

description: MATLAB file containing Oufti software generated cell (phase contrast) and nucleoid (DAPI/'object') meshes for DL2151. <br>Data for 4 biological repeats are concatenated.Biological Repeat 1 = frames 1 -73Biological Repeat 2 = frames 74 - 143Biological Repeat 3 = frames 144 - 213<br>Biological Repeat 4 = frames 214 - 283
DOI: 10.6084/m9.figshare.9764963.v1
title: DL2874 cell and nucleoid mesh_MW.mat

description: MATLAB file containing Oufti software generated cell (phase contrast) and nucleoid (DAPI/'object') meshes for DL2874. <br>Data for 4 biological repeats are concatenated.Biological Repeat 1 = frames 1 -71Biological Repeat 2 = frames 72 - 141Biological Repeat 3 = frames 142 - 216<br>Biological Repeat 4 = frames 217 - 286
DOI: 10.6084/m9.figshare.9764630
title: Supplemental Table 1

description: Examples of descriptions of colon mass diagnoses provided by the veterinary pathologist.
DOI: 10.6084/m9.figshare.9764639
title: Supplemental Table 2

description: <b>Supplemental Table 2. </b>Test for statistical interaction between Genotype and Diet at various outcomes throughout the study was conducted by a two-way ANOVA.
DOI: 10.6084/m9.figshare.9764654
title: Supplemental Table 4

description: <b>Supplemental Table 4.</b> List of 185 deferentially expressed genes (DEGs) modulated by the loss of AhR in Intestinal Epithelial Cells (IEC) expressed as a ratio of Log2FC with and FDR &lt;0.1. Gene symbols, common gene name, Log2FC, p-value and FDR are provided. Values in the table are sorted from higher to lower Log2FC values.
DOI: 10.6084/m9.figshare.9764639.v1
title: Supplemental Table 2

description: <b>Supplemental Table 2. </b>Test for statistical interaction between Genotype and Diet at various outcomes throughout the study was conducted by a two-way ANOVA.
DOI: 10.6084/m9.figshare.9764654.v1
title: Supplemental Table 4

description: <b>Supplemental Table 4.</b> List of 185 deferentially expressed genes (DEGs) modulated by the loss of AhR in Intestinal Epithelial Cells (IEC) expressed as a ratio of Log2FC with and FDR &lt;0.1. Gene symbols, common gene name, Log2FC, p-value and FDR are provided. Values in the table are sorted from higher to lower Log2FC values.
DOI: 10.6084/m9.figshare.9764630.v1
title: Supplemental Table 1

description: Examples of descriptions of colon mass diagnoses provided by the veterinary pathologist.
DOI: 10.6084/m9.figshare.9764567
title: Data for Cat Bite Paper Under Review.csv

description: Data is de-identified and in a .csv file. The variable cat_reside is coded 0 for cat not residing with participant prior to age 13 and 1 for yes a cat did reside with them prior to age 13. The variable bite_agebin is coded as 0 for denying a lifetime cat bite that broke the skin, 1 for a cat bite prior to age 13, and 2 for the first cat bite after age 12. Sex is coded as 1 male and 2 female. Race coded as 1 White/Caucasian, 2 Black/African-American, 3 Asian, and 6 "more than one race." Ethnicity is coded as 1 "Latinx" and 2 "not Latinx." Dx_Class is coded as 1 "Schizophrenia-Spectrum Disorders," 2 "Bipolar Disorders," 3 "Unipolar Depression," and 4 "No diagnosis." Once paper is published, the full reference will appear here which will make it easier to understand dataset.
DOI: 10.6084/m9.figshare.9764588
title: Proteomic analysis of COPD mouse skeletal muscle

description: This is the analysis of extensor digitorum longus (EDL) muscle from animals with genetically induced pulmonary emphysema (IL+) versus animals without pulmonary emphysema
DOI: 10.6084/m9.figshare.9764519
title: aMAT supplementary

description: Supplementary of "Multi-trait genome-wide analyses of the brain imaging phenotypes in UK Biobank"
DOI: 10.6084/m9.figshare.9764567.v1
title: Data for Cat Bite Paper Under Review.csv

description: Data is de-identified and in a .csv file. The variable cat_reside is coded 0 for cat not residing with participant prior to age 13 and 1 for yes a cat did reside with them prior to age 13. The variable bite_agebin is coded as 0 for denying a lifetime cat bite that broke the skin, 1 for a cat bite prior to age 13, and 2 for the first cat bite after age 12. Sex is coded as 1 male and 2 female. Race coded as 1 White/Caucasian, 2 Black/African-American, 3 Asian, and 6 "more than one race." Ethnicity is coded as 1 "Latinx" and 2 "not Latinx." Dx_Class is coded as 1 "Schizophrenia-Spectrum Disorders," 2 "Bipolar Disorders," 3 "Unipolar Depression," and 4 "No diagnosis." Once paper is published, the full reference will appear here which will make it easier to understand dataset.
DOI: 10.6084/m9.figshare.9764567.v2
title: Data for Cat Bite Paper Under Review.csv

description: Data is de-identified and in a .csv file. The variable cat_reside is coded 0 for cat not residing with participant prior to age 13 and 1 for yes a cat did reside with them prior to age 13. The variable bite_agebin is coded as 0 for denying a lifetime cat bite that broke the skin, 1 for a cat bite prior to age 13, and 2 for the first cat bite after age 12. Sex is coded as 1 male and 2 female. Race coded as 1 White/Caucasian, 2 Black/African-American, 3 Asian, and 6 "more than one race." Ethnicity is coded as 1 "Latinx" and 2 "not Latinx." Dx_Class is coded as 1 "Schizophrenia-Spectrum Disorders," 2 "Bipolar Disorders," 3 "Unipolar Depression," and 4 "No diagnosis." Once paper is published, the full reference will appear here which will make it easier to understand dataset.
DOI: 10.6084/m9.figshare.9764519.v1
title: aMAT supplementary

description: Supplementary.
DOI: 10.6084/m9.figshare.9764519.v3
title: aMAT supplementary

description: Supplementary of "Multi-trait genome-wide analyses of the brain imaging phenotypes in UK Biobank"
DOI: 10.6084/m9.figshare.9764519.v2
title: aMAT supplementary

description: Supplementary of "Multi-trait genome-wide analyses of the brain imaging phenotypes in UK Biobank"
DOI: 10.25380/iastate.9763058
title: Sulfur on Ag(110) at low sulfur coverages

description: Data includes experimental STM images of sulfur on Ag(110), sulfur coverage calculations, and spacing and size measurements of complexes and sulfur adatoms at two different sulfur coverages, 20 mML and 250 mML.
DOI: 10.6084/m9.figshare.9762980
title: Interpolated PPNN data

description: https://github.com/slerch/ppnn
DOI: 10.6084/m9.figshare.9762980.v1
title: Interpolated PPNN data

description: https://github.com/slerch/ppnn