cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19150977.v1
title: Additional file 2 of An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development

description: Additional file 2: Table S1. Statistics of the Iso-seq data in this study.
DOI: 10.6084/m9.figshare.19150980
title: Additional file 3 of An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development

description: Additional file 3: Table S2. Expression levels of the top 10 most abundant transcripts and their representation in D4h and L4h Iso-seq datasets.
DOI: 10.6084/m9.figshare.19150980.v1
title: Additional file 3 of An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development

description: Additional file 3: Table S2. Expression levels of the top 10 most abundant transcripts and their representation in D4h and L4h Iso-seq datasets.
DOI: 10.6084/m9.figshare.19150992
title: Additional file 5 of An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development

description: Additional file 5: Table S4. A summary of full-length gene models identified in this study.
DOI: 10.6084/m9.figshare.19150986
title: Additional file 4 of An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development

description: Additional file 4: Table S3. A summary of Iso-seq gene models exceeding annotated transcript length.
DOI: 10.6084/m9.figshare.19150998
title: Additional file 6 of An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development

description: Additional file 6: Table S5. A list of 671 TAIR10 unannotated genes.
DOI: 10.6084/m9.figshare.19151004
title: Additional file 7 of An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development

description: Additional file 7: Table S6. A comparison of gene models identified in three long-read datasets.
DOI: 10.6084/m9.figshare.19150986.v1
title: Additional file 4 of An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development

description: Additional file 4: Table S3. A summary of Iso-seq gene models exceeding annotated transcript length.
DOI: 10.6084/m9.figshare.19150992.v1
title: Additional file 5 of An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development

description: Additional file 5: Table S4. A summary of full-length gene models identified in this study.
DOI: 10.6084/m9.figshare.19150998.v1
title: Additional file 6 of An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development

description: Additional file 6: Table S5. A list of 671 TAIR10 unannotated genes.
DOI: 10.6084/m9.figshare.19151004.v1
title: Additional file 7 of An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development

description: Additional file 7: Table S6. A comparison of gene models identified in three long-read datasets.
DOI: 10.6084/m9.figshare.19151007
title: Additional file 8 of An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development

description: Additional file 8: Table S7. A comparison of gene models based on Iso-seq and RNA-seq.
DOI: 10.6084/m9.figshare.19151007.v1
title: Additional file 8 of An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development

description: Additional file 8: Table S7. A comparison of gene models based on Iso-seq and RNA-seq.
DOI: 10.6084/m9.figshare.19151016
title: Additional file 9 of An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development

description: Additional file 9: Table S8. A summary of fusion transcripts identified in this study.
DOI: 10.6084/m9.figshare.19151034
title: Additional file 1 of A large-scale genome and transcriptome sequencing analysis reveals the mutation landscapes induced by high-activity adenine base editors in plants

description: Additional file 1: Supplementary tables. Table S1, Summary of plants with ABEs. Table S2, Mapping statistics of whole-genome sequencing. Table S3, Summary of sgRNA-dependent on-target and off-target loci. Table S4, Summary of all the homozygous SNVs. Table S5, Summary of all the homozygous indels. Table S6, Summary of genomic SNVs detected through WGS. Table S7, Summary of the overlapping SNVs between each of the plants with whole-genome sequencing. Table S8, Mapping statistics of whole-transcriptome sequencing. Table S9, Summary of all the transcriptomic SNVs. Table S10, Summary of clustered A&gt;G DNA SNVs. Table S11, Primers used to verify DNA SNVs by Sanger sequencing. Table S12, Primers used to verify RNA SNVs by Sanger sequencing.
DOI: 10.6084/m9.figshare.19151034.v1
title: Additional file 1 of A large-scale genome and transcriptome sequencing analysis reveals the mutation landscapes induced by high-activity adenine base editors in plants

description: Additional file 1: Supplementary tables. Table S1, Summary of plants with ABEs. Table S2, Mapping statistics of whole-genome sequencing. Table S3, Summary of sgRNA-dependent on-target and off-target loci. Table S4, Summary of all the homozygous SNVs. Table S5, Summary of all the homozygous indels. Table S6, Summary of genomic SNVs detected through WGS. Table S7, Summary of the overlapping SNVs between each of the plants with whole-genome sequencing. Table S8, Mapping statistics of whole-transcriptome sequencing. Table S9, Summary of all the transcriptomic SNVs. Table S10, Summary of clustered A&gt;G DNA SNVs. Table S11, Primers used to verify DNA SNVs by Sanger sequencing. Table S12, Primers used to verify RNA SNVs by Sanger sequencing.
DOI: 10.6084/m9.figshare.19151076.v1
title: Additional file 1 of Zebrafish patient-derived xenograft models predict lymph node involvement and treatment outcome in non-small cell lung cancer

description: Additional file 1: Supplemental Figure S1. Histological assessment of patient samples and PDX models. Histological features of the selected NSCLC PDX and corresponding patient tissue. H&E stains were prepared from FFPE samples of donor patient tissue as well as the fourth passage of PDX derived thereof. Whole slides were scanned and 10x magnification jpegs extracted of the scans (scale bar included). Supplemental Figure S2. EGFR gene-expression levels correlate with Erlotinib response. EGFR gene-expression measured in the microarray HGU133 (left graph) or by RNA-sequencing (right graph) plotted against the relative tumor size of Erlotinib-treated versus control ZTX models (low values indicate stronger response to Erlotinib). Blue dashed regression lines indicate logarithmic regressions based on the values within the blue dashed circles.
DOI: 10.6084/m9.figshare.19151076
title: Additional file 1 of Zebrafish patient-derived xenograft models predict lymph node involvement and treatment outcome in non-small cell lung cancer

description: Additional file 1: Supplemental Figure S1. Histological assessment of patient samples and PDX models. Histological features of the selected NSCLC PDX and corresponding patient tissue. H&E stains were prepared from FFPE samples of donor patient tissue as well as the fourth passage of PDX derived thereof. Whole slides were scanned and 10x magnification jpegs extracted of the scans (scale bar included). Supplemental Figure S2. EGFR gene-expression levels correlate with Erlotinib response. EGFR gene-expression measured in the microarray HGU133 (left graph) or by RNA-sequencing (right graph) plotted against the relative tumor size of Erlotinib-treated versus control ZTX models (low values indicate stronger response to Erlotinib). Blue dashed regression lines indicate logarithmic regressions based on the values within the blue dashed circles.
DOI: 10.6084/m9.figshare.16880398
title: Additional file 2 of Mapping multicenter randomized controlled trials in anesthesiology: a scoping review

description: Additional file 2.
DOI: 10.6084/m9.figshare.16880398.v2
title: Additional file 2 of Mapping multicenter randomized controlled trials in anesthesiology: a scoping review

description: Additional file 2.
DOI: 10.6084/m9.figshare.16880398.v1
title: Additional file 2 of Mapping multicenter randomized controlled trials in anesthesiology: a scoping review

description: Additional file 2.
DOI: 10.6084/m9.figshare.19151244
title: Additional file 2 of Complete pan-plastome sequences enable high resolution phylogenetic classification of sugar beet and closely related crop wild relatives

description: Additional file 2: S2A. Sequence identities [%] of all investigated plastome gene sequences and intergenic regions including outgroup reference sequences. S2B. Sequence identities [%] of all investigated plastome gene sequences and intergenic regions excluding outgroup reference sequences. S2C. Accession IDs, taxonomy, read and assembly statistics and geographic location of the investigated accessions of the Betoideae subfamily. S2D. SRA-IDs of the processed read datasets.
DOI: 10.6084/m9.figshare.19151244.v1
title: Additional file 2 of Complete pan-plastome sequences enable high resolution phylogenetic classification of sugar beet and closely related crop wild relatives

description: Additional file 2: S2A. Sequence identities [%] of all investigated plastome gene sequences and intergenic regions including outgroup reference sequences. S2B. Sequence identities [%] of all investigated plastome gene sequences and intergenic regions excluding outgroup reference sequences. S2C. Accession IDs, taxonomy, read and assembly statistics and geographic location of the investigated accessions of the Betoideae subfamily. S2D. SRA-IDs of the processed read datasets.
DOI: 10.6084/m9.figshare.19151253.v1
title: Additional file 11 of Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

description: Additional file 11: Gene ontologies for nectary enriched genes. Full gene ontology analysis for nectary-enriched genes. (XLS 46 KB)
DOI: 10.6084/m9.figshare.19151253
title: Additional file 11 of Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

description: Additional file 11: Gene ontologies for nectary enriched genes. Full gene ontology analysis for nectary-enriched genes. (XLS 46 KB)
DOI: 10.6084/m9.figshare.19151259
title: Additional file 13 of Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

description: Additional file 13: Oligonucleotides used in this study. List of primers used for RT PCR validation experiments. (XLS 20 KB)
DOI: 10.6084/m9.figshare.19151259.v1
title: Additional file 13 of Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

description: Additional file 13: Oligonucleotides used in this study. List of primers used for RT PCR validation experiments. (XLS 20 KB)
DOI: 10.6084/m9.figshare.19151289.v1
title: Additional file 2 of Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

description: Additional file 2: Non-nectary reference tissues. Description of non-nectary reference tissue .cel files used for analyses. (XLS 44 KB)
DOI: 10.6084/m9.figshare.19151292
title: Additional file 3 of Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

description: Additional file 3: All normalized probe values. Full list of normalized probe signal intensities for all genes called 'present' in nectaries (includes values for reference tissues). (XLS 20 MB)
DOI: 10.6084/m9.figshare.19151292.v1
title: Additional file 3 of Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

description: Additional file 3: All normalized probe values. Full list of normalized probe signal intensities for all genes called 'present' in nectaries (includes values for reference tissues). (XLS 20 MB)
DOI: 10.6084/m9.figshare.19151295
title: Additional file 4 of Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

description: Additional file 4: ILN versus reference tissues. List comparing gene expression between ILN and reference tissues (includes p and q values). (TXT 19 MB)
DOI: 10.6084/m9.figshare.19151295.v1
title: Additional file 4 of Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

description: Additional file 4: ILN versus reference tissues. List comparing gene expression between ILN and reference tissues (includes p and q values). (TXT 19 MB)
DOI: 10.6084/m9.figshare.19151289
title: Additional file 2 of Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

description: Additional file 2: Non-nectary reference tissues. Description of non-nectary reference tissue .cel files used for analyses. (XLS 44 KB)
DOI: 10.6084/m9.figshare.19151298
title: Additional file 5 of Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

description: Additional file 5: MLN versus reference tissues. List comparing gene expression between MLN and reference tissues (includes p and q values). (TXT 19 MB)
DOI: 10.6084/m9.figshare.19151298.v1
title: Additional file 5 of Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

description: Additional file 5: MLN versus reference tissues. List comparing gene expression between MLN and reference tissues (includes p and q values). (TXT 19 MB)
DOI: 10.6084/m9.figshare.19151304
title: Additional file 6 of Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

description: Additional file 6: MMN versus reference tissues. List comparing gene expression between MMN and reference tissues (includes p and q values). (TXT 19 MB)
DOI: 10.6084/m9.figshare.19151304.v1
title: Additional file 6 of Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

description: Additional file 6: MMN versus reference tissues. List comparing gene expression between MMN and reference tissues (includes p and q values). (TXT 19 MB)
DOI: 10.6084/m9.figshare.19151310
title: Additional file 8 of Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

description: Additional file 8: Nectary versus nectary comparison. Filterable list comparing gene expression between different nectary samples. (XLS 9 MB)
DOI: 10.6084/m9.figshare.19151310.v1
title: Additional file 8 of Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

description: Additional file 8: Nectary versus nectary comparison. Filterable list comparing gene expression between different nectary samples. (XLS 9 MB)
DOI: 10.6084/m9.figshare.19151302
title: Additional file 10 of Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

description: Additional file 10: Table S8. phenotypic drug susceptibility testing (pDST) results for isolates from the German cohort.
DOI: 10.6084/m9.figshare.19151302.v1
title: Additional file 10 of Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

description: Additional file 10: Table S8. phenotypic drug susceptibility testing (pDST) results for isolates from the German cohort.
DOI: 10.6084/m9.figshare.19151308
title: Additional file 2 of Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

description: Additional file 2: Table S2. Metadata and classification results for all samples from the training and evaluation set.
DOI: 10.6084/m9.figshare.19151308.v1
title: Additional file 2 of Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

description: Additional file 2: Table S2. Metadata and classification results for all samples from the training and evaluation set.
DOI: 10.6084/m9.figshare.19151311
title: Additional file 3 of Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

description: Additional file 3: Table S3. Metadata and classification results for all samples from German cohort.
DOI: 10.6084/m9.figshare.19151311.v1
title: Additional file 3 of Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

description: Additional file 3: Table S3. Metadata and classification results for all samples from German cohort.
DOI: 10.6084/m9.figshare.19151314.v1
title: Additional file 4 of Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

description: Additional file 4: Table S4. Summary of all genes that were evaluated as taxonomic markers.
DOI: 10.6084/m9.figshare.19151314
title: Additional file 4 of Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

description: Additional file 4: Table S4. Summary of all genes that were evaluated as taxonomic markers.
DOI: 10.6084/m9.figshare.19151317
title: Additional file 5 of Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

description: Additional file 5: Table S5. Summary of all H. influenzae and H. haemolyticus marker candidates that were identified using a panGWAS analysis.
DOI: 10.6084/m9.figshare.19151317.v1
title: Additional file 5 of Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

description: Additional file 5: Table S5. Summary of all H. influenzae and H. haemolyticus marker candidates that were identified using a panGWAS analysis.
DOI: 10.6084/m9.figshare.19151326
title: Additional file 8 of Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

description: Additional file 8: Table S6. SRST2 output for short read datasets from the evaluation set using the newly developed classification database.
DOI: 10.6084/m9.figshare.19151326.v1
title: Additional file 8 of Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

description: Additional file 8: Table S6. SRST2 output for short read datasets from the evaluation set using the newly developed classification database.
DOI: 10.6084/m9.figshare.19151329.v1
title: Additional file 9 of Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

description: Additional file 9: Table S7. SRST2 output for Illumina sequencing datasets from the German cohort using a public MLST database.
DOI: 10.6084/m9.figshare.19151329
title: Additional file 9 of Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

description: Additional file 9: Table S7. SRST2 output for Illumina sequencing datasets from the German cohort using a public MLST database.
DOI: 10.6084/m9.figshare.19151382
title: Additional file 2 of Mutant C. elegans mitofusin leads to selective removal of mtDNA heteroplasmic deletions across generations to maintain fitness

description: Additional file 2. Individual data values. Spreadsheets of numerical data for Figures 1, 2, 3, 4 and 5 and Supplementary Figures S1-S4.
DOI: 10.6084/m9.figshare.19151382.v1
title: Additional file 2 of Mutant C. elegans mitofusin leads to selective removal of mtDNA heteroplasmic deletions across generations to maintain fitness

description: Additional file 2. Individual data values. Spreadsheets of numerical data for Figures 1, 2, 3, 4 and 5 and Supplementary Figures S1-S4.
DOI: 10.25919/d98c-n851
title: Parkes observations for project P455 semester 2021OCTS_05

description: This project is to continue timing and profile studies of the first double-pulsar system, a unique laboratory for gravitational physics. Recent results, including the first measurements of higher-order light-propagation effects and of the relativistic deformation of the orbit, highlight the importance of a long term observational campaign for this remarkable system. The main aims of this proposal are to exploit the high sensitivity of the UWL receiver to provide the strongest tests to date for general relativity and to measure for the first time the moment-of-inertia of a neutron star. Additionally, we will search for the reappearance of the B pulsar.
DOI: 10.5281/zenodo.6032008
title: supporting information

description: Research topic data source (No. 202102080439)
DOI: 10.5281/zenodo.6032007
title: supporting information

description: Research topic data source (No. 202102080439)
DOI: 10.5517/ccdc.csd.cc28mn0l
title: CCDC 2104249: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Effendy, Allan H. White|2021|CSD Communication|||
description: Related Article: Effendy, Fabio Marchetti, Corrado Di Nicola, Claudio Pettinari, Riccardo Pettinari, Brian W. Skelton, Alessia Tombesi, Allan H. White|2022|Inorg.Chim.Acta|534|120825|doi:10.1016/j.ica.2022.120825
DOI: 10.5517/ccdc.csd.cc28mvf6
title: CCDC 2104448: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Effendy, Allan H. White|2021|CSD Communication|||
description: Related Article: Effendy, Fabio Marchetti, Corrado Di Nicola, Claudio Pettinari, Riccardo Pettinari, Brian W. Skelton, Alessia Tombesi, Allan H. White|2022|Inorg.Chim.Acta|534|120825|doi:10.1016/j.ica.2022.120825
DOI: 10.5517/ccdc.csd.cc28nylh
title: CCDC 2105507: Experimental Crystal Structure Determination

description: Related Article: Janet Arras, Omar Ugarte Trejo, Nattamai Bhuvanesh, Michael Stollenz|2022|Chem.Commun.|58|1418|doi:10.1039/D1CC06065A
DOI: 10.5517/ccdc.csd.cc28q0jk
title: CCDC 2106528: Experimental Crystal Structure Determination

description: Related Article: Michiyasu Nakao, Munehisa Toguchi, Ken Horikoshi, Syuji Kitaike, Shigeki Sano|2022|Heterocycles|104|379|doi:10.3987/COM-21-14575
DOI: 10.5281/zenodo.6031491
title: Dataset PAM PAN PI

description: Dataset de hoja madura, hoja nueva e inflorescencia de acuyo
DOI: 10.5281/zenodo.6031490
title: Dataset PAM PAN PI

description: Dataset de hoja madura, hoja nueva e inflorescencia de acuyo