cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6760337
title: All-atom accelerated molecular dynamics (aMD) simulations of Filamin-A (FLNa) actin-binding Domain, immunoglobulin-like Domains 3, 4, 5, 21 and 24 to investagate the impact of known missense mutations associated with periventricular nodular heterotopia in the liveborn males

description: Data includes all of the wild-type and mutant trajectories of accelerated all-atom molecular dynamics (aMD) simulations of Filamin-A (FLNa, the product of <em>FLNA</em> gene located on chromosome X). Wild-type proteins are from the PDB structures with IDs: 4M9P, 3HOP, 3CNK. The mutations, including R484Q that we discovered in a Turkish family, were formerly found in the liveborn males with <em>FLNA</em>-associated periventricular nodular heterotopia (PNH), who survived with the only copy of mutated <em>FLNA</em>. To understand how these mutations lead to the PNH and simultaneously allow their survival, we performed these MD simulations for the wild-type and mutant systems. Systems were prepared in Visual Molecular Dynamics (VMD 1.9.3) by placing them in a TIP3P water box with approximately 20 Å thickness from the protein surface and neutralizing the system by adding counter ions in the form of NaCl. Of note, only protein parts were kept for the submission to reduce the size of files. Nanoscale Molecular Dynamics (NAMD 2.13-CUDA) was used to perform MD simulations with CHARMM36m force field. For pressure and temperature controls, Nosé-Hoover Langevin barostat and Langevin thermostat were used. ShakeH algorithm of NAMD was applied for water molecule constraints. 12 Å cut-off distance was used for van der Waals interactions. Switching function starts at 10 Å and reaches zero at 14 Å. Integration time-step was 2 fs. To compute the long-range Coulomb interactions, the particle-mash Ewald method was used. After a 10000-step minimization with conjugate gradient algorithm and an equilibration for 1 ns at 298 K under NVT ensemble, production simulations were run along 100 ns. Only the production simulations were supplied in this dataset. Further details are available in the regarding configuration files. Resulting analysis files and scripts are included with the carbon alpha-containing dcd files of the simulations. This dataset is not used directly for any study, but they are preliminary results for the usage of aMD to understand rare disease mechanisms. Related publications: <pre>Zenodo repo of classical MD for these variants: https://doi.org/10.5281/zenodo.4483108</pre> Journal article based on classical MD: Gerlevik U, Saygı C, Cangül H, Kutlu A, Çaralan EF, Topçu Y, et al. (2022) Computational analysis of missense filamin-A variants, including the novel p.Arg484Gln variant of two brothers with periventricular nodular heterotopia. PLoS ONE 17(5): e0265400. https://doi.org/10.1371/journal.pone.0265400
DOI: 10.5281/zenodo.6761110
title: Triaxial cycling loading of Westerly granite: Mechanical and Ultrasonic data

description: Data obtained from triaxial cyclic loading experiments conducted on dry Westerly granite at confining pressure ranging from 40 to 120 MPa. Text files (.txt) are raw, unprocessed time series of mechanical data including load, shortening and radial and axial strain gauge measurements. Except noted, units are in Volts. Strain gauge voltages can be converted into strain using gauge factor of 2.11 and amplification factor of 40. External shortening can be converted to sample shortening using a machine stiffness of 480 kN/mm. Raw ultrasonic data are combined in folders named BSF*. Data format is binary, and can be read using ASC ltd. software "Insite". Files "sensors.txt" contain ultrasonic sensor positions and time offset corrections.
DOI: 10.6084/m9.figshare.19398161
title: A critical evaluation of Mycobacterium bovis pangenomics, with reference to its utility in outbreak investigation

description: Supplementary material for 'A critical evaluation of <em>Mycobacterium bovis</em> pangenomics, with reference to its utility in outbreak investigation' as published in <em>Microbial Genomics.</em>
DOI: 10.6084/m9.figshare.19398161.v1
title: A critical evaluation of Mycobacterium bovis pangenomics, with reference to its utility in outbreak investigation

description: Supplementary material for 'A critical evaluation of <em>Mycobacterium bovis</em> pangenomics, with reference to its utility in outbreak investigation' as published in <em>Microbial Genomics.</em>
DOI: 10.17632/gmwkgkkyk6.1
title: Risk factors for comorbid epilepsy in patients with psychogenic non-epileptic seizures. Dataset of a large cohort study

description: Table 1 shows the raw dataset of patients diagnosed with Psychogenic non-epileptic seizures (PNES) in our Epilepsy Monitoring Unit (EMU) between May 2001 and February 2011, and their prospective follow-up until September 2016. It includes patients with or without comorbid epilepsy. 
The following demographic and clinical variables are included in the table: gender, age at the EMU admission, number of children, marital status, maximum education degree, present and past employment status, valid or suspended driving license and reason, age at PNES onset and years with PNES, frequency of PNES at the time of EMU admission, duration of longest PNES seizure according to either patient or witness (whichever was considered more accurate), report of minor head trauma - stated as a concussion or lesser injury that should not cause an increased risk of epilepsy- by the patient as immediately preceding the initial PNES, neuropsychological evaluation (with the Minnesota Multiphasic Personality Inventory test) results, family history of epilepsy, personal history of febrile seizures, developmental disabilities, meningitis/meningoencephalitis, traumatic brain injury – as amnesia, alteration or loss of consciousness or neurologic deficits after a blow to head [2, 3] - brain lesions on neuroimaging considered of risk for epilepsy, history of substance abuse, dementia (Alzheimer’s disease or any other), other neurological or psychiatric medical conditions, history of active suicidal ideation, description of the seizures signs and symptoms, their auras and triggers, EEG findings, type of epilepsy if associated, number of Anti-Seizure Medications (ASM) at EMU admission and discharge, and the outcome of the spells and ASM intake during the follow-up after the EMU discharge (only ASM prescribed for the treatment of the seizures where counted). 
The categories in which each variable was divided are described in the headline of the columns.
DOI: 10.6084/m9.figshare.20161451
title: Detection voltage PSD (distance PSD-VCSEL 8.5 cm) with collimation

description: The dataset contains the voltage measured by a PSD (Position Sensing Detector) depending on the x-position of a VCSEL light source (850 nm). The VCSEL is <strong>collimated</strong>, and at a <strong>z-position of 8.5 cm of the PSD</strong>. The aim is to compare the detection by the PSD of the light spot collimated or not, at different distances. A mean is computed on the data the get one voltage value at the end.
DOI: 10.6084/m9.figshare.20161451.v1
title: Detection voltage PSD (distance PSD-VCSEL 8.5 cm) with collimation

description: The dataset contains the voltage measured by a PSD (Position Sensing Detector) depending on the x-position of a VCSEL light source (850 nm). The VCSEL is <strong>collimated</strong>, and at a <strong>z-position of 8.5 cm of the PSD</strong>. The aim is to compare the detection by the PSD of the light spot collimated or not, at different distances. A mean is computed on the data the get one voltage value at the end.
DOI: 10.17632/prrjh2f7xf.1
title: Risk factors for graft loss and death among kidney transplant recipients: A competing risk analysis. 

description: Risk factors for graft loss and death among kidney transplant recipients: A competing risk analysis.
DOI: 10.17632/cb75zkxb6y.3
title: Effect of Bi3+ on the crystal structure and the multiferroic properties of LaFeO3

description: Raw and processed data employed in the work " Magnetodielectric coupling in bismuth doped LaFeO3"
DOI: 10.17632/rgs22r7s75.1
title: Smart Aquaculture Dashboard

description: This is data from the development of IoT for smart aquaculture, this data is used as information that will be displayed on the smart dashboard and used as analysis material for aquaculture farmers
DOI: 10.17632/xkm4k5rmvp.1
title: Closure of the eastern Paleo-Asian Ocean: Insights from an upper Permian sedimentary record of subduction to collision in northeast China

description: Supporting Information for [Closure of the eastern Paleo-Asian Ocean: Insights from an upper Permian sedimentary record of subduction to collision in northeast China]
DOI: 10.5066/p9ngjpgy
title: Precipitation, suspended-sediment, and water-quality data collected at U.S. Army Garrison Fort Carson and Pi&amp;ntilde;on Canyon Maneuver Site, Colorado, during water years 2016-18

description: Precipitation, suspended-sediment, and water-quality data were collected by the U.S. Geological Survey (USGS) in cooperation with the U.S. Army on two bases in Colorado, U.S. Army Garrison Fort Carson and Pi&amp;ntilde;on Canyon Maneuver Site, during water years 2016&amp;ndash;18. Data were collected to assist in understanding the potential effects of military training maneuvers on water resources and water quality for various streams on each base.
DOI: 10.6084/m9.figshare.20161496
title: Detection voltage PSD (distance PSD-VCSEL 8.5 cm) without collimation

description: The dataset contains the voltage measured by a PSD (Position Sensing Detector) depending on the x-position of a VCSEL light source (850 nm). The VCSEL is <strong>not collimated</strong>, and at a <strong>z-position of 8.5 cm of the PSD</strong>. The aim is to compare the detection by the PSD of the light spot collimated or not, at different distances. A mean is computed on the data the get one voltage value at the end.
DOI: 10.6084/m9.figshare.20161496.v2
title: Detection voltage PSD (distance PSD-VCSEL 8.5 cm) without collimation

description: The dataset contains the voltage measured by a PSD (Position Sensing Detector) depending on the x-position of a VCSEL light source (850 nm). The VCSEL is <strong>not collimated</strong>, and at a <strong>z-position of 8.5 cm of the PSD</strong>. The aim is to compare the detection by the PSD of the light spot collimated or not, at different distances. A mean is computed on the data the get one voltage value at the end.
DOI: 10.6084/m9.figshare.20161496.v1
title: Detection voltage PSD (distance PSD-VCSEL 8.5 cm) withou collimation

description: The dataset contains the voltage measured by a PSD (Position Sensing Detector) depending on the x-position of a VCSEL light source (850 nm). The VCSEL is <strong>not collimated</strong>, and at a <strong>z-position of 8.5 cm of the PSD</strong>. The aim is to compare the detection by the PSD of the light spot collimated or not, at different distances. A mean is computed on the data the get one voltage value at the end.
DOI: 10.6084/m9.figshare.20161499
title: Detection voltage PSD (distance PSD-VCSEL 20 cm) with collimation

description: The dataset contains the voltage measured by a PSD (Position Sensing Detector) depending on the x-position of a VCSEL light source (850 nm). The VCSEL is <strong>collimated</strong>, and at a <strong>z-position of 20 cm of the PSD</strong>. The aim is to compare the detection by the PSD of the light spot collimated or not, at different distances. A mean is computed on the data the get one voltage value at the end.
DOI: 10.6084/m9.figshare.20161535
title: Detection voltage PSD (distance PSD-VCSEL 20 cm) with collimation

description: The dataset contains the voltage measured by a PSD (Position Sensing Detector) depending on the x-position of a VCSEL light source (850 nm). The VCSEL is <strong>collimated</strong>, and at a <strong>z-position of 20 cm of the PSD</strong>. The aim is to compare the detection by the PSD of the light spot collimated or not, at different distances. A mean is computed on the data the get one voltage value at the end.
DOI: 10.6084/m9.figshare.20161535.v1
title: Detection voltage PSD (distance PSD-VCSEL 20 cm) with collimation

description: The dataset contains the voltage measured by a PSD (Position Sensing Detector) depending on the x-position of a VCSEL light source (850 nm). The VCSEL is <strong>collimated</strong>, and at a <strong>z-position of 20 cm of the PSD</strong>. The aim is to compare the detection by the PSD of the light spot collimated or not, at different distances. A mean is computed on the data the get one voltage value at the end.
DOI: 10.6084/m9.figshare.20161511
title: Detection voltage PSD (distance PSD-VCSEL 40 cm) without collimation

description: The dataset contains the voltage measured by a PSD (Position Sensing Detector) depending on the x-position of a VCSEL light source (850 nm). The VCSEL is <strong>not collimated</strong>, and at a <strong>z-position of 40 cm of the PSD</strong>. The aim is to compare the detection by the PSD of the light spot collimated or not, at different distances. A mean is computed on the data the get one voltage value at the end.
DOI: 10.6084/m9.figshare.20161511.v2
title: Detection voltage PSD (distance PSD-VCSEL 40 cm) without collimation

description: The dataset contains the voltage measured by a PSD (Position Sensing Detector) depending on the x-position of a VCSEL light source (850 nm). The VCSEL is <strong>not collimated</strong>, and at a <strong>z-position of 40 cm of the PSD</strong>. The aim is to compare the detection by the PSD of the light spot collimated or not, at different distances. A mean is computed on the data the get one voltage value at the end.
DOI: 10.17632/5rdyj2rhcd.1
title: LINF_290025600

description: Tob55
Leishmania infantum (strain JPCM5)
DOI: 10.17632/7b7gvjw88n.1
title: LINF_290025100

description: paraflagellar rod protein 1D | PFR1
Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.20161511.v1
title: Detection voltage PSD (distance PSD-VCSEL 40 cm) with collimation

description: The dataset contains the voltage measured by a PSD (Position Sensing Detector) depending on the x-position of a VCSEL light source (850 nm). The VCSEL is <strong>not collimated</strong>, and at a <strong>z-position of 40 cm of the PSD</strong>. The aim is to compare the detection by the PSD of the light spot collimated or not, at different distances. A mean is computed on the data the get one voltage value at the end.
DOI: 10.17632/vn5p67j4gy.1
title: LINF_290026300

description: hypothetical protein - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/svs68wvkmv.1
title: LINF_290025700

description: dihydrolipoamide dehydrogenase | DLDH1 | GCVL-1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/8xc5br2y3j.1
title: Lipid Profile and Angiography report

description: Being as cardiac and diabetic patient, I have summarized my Lipid profile report from year 2017 to 2022. Angiography report in year 2017. Doctor suggest bypass surgery. This reports are for my reference and believe that cardiovascular system can be better by using healthy diet and changing life style. Therefore I have generated this data to link my future article on cardiac system
DOI: 10.17632/fvt29y8jj9.1
title: What Drives Investing Habits of Mutual Fund Investors?

description: Contains the data set for the paper titled "What Drives Investing Habits of Mutual Fund Investors?". For LCA and Multinomial regression
DOI: 10.6084/m9.figshare.20161538
title: Detection voltage PSD (distance PSD-VCSEL 20 cm) without collimation

description: The dataset contains the voltage measured by a PSD (Position Sensing Detector) depending on the x-position of a VCSEL light source (850 nm). The VCSEL is <strong>not collimated</strong>, and at a <strong>z-position of 20 cm of the PSD</strong>. The aim is to compare the detection by the PSD of the light spot collimated or not, at different distances. A mean is computed on the data the get one voltage value at the end.
DOI: 10.6084/m9.figshare.20161538.v1
title: Detection voltage PSD (distance PSD-VCSEL 20 cm) without collimation

description: The dataset contains the voltage measured by a PSD (Position Sensing Detector) depending on the x-position of a VCSEL light source (850 nm). The VCSEL is <strong>not collimated</strong>, and at a <strong>z-position of 20 cm of the PSD</strong>. The aim is to compare the detection by the PSD of the light spot collimated or not, at different distances. A mean is computed on the data the get one voltage value at the end.
DOI: 10.6084/m9.figshare.20161499.v1
title: Detection voltage PSD (distance PSD-VCSEL 20 cm) with collimation

description: The dataset contains the voltage measured by a PSD (Position Sensing Detector) depending on the x-position of a VCSEL light source (850 nm). The VCSEL is <strong>collimated</strong>, and at a <strong>z-position of 20 cm of the PSD</strong>. The aim is to compare the detection by the PSD of the light spot collimated or not, at different distances. A mean is computed on the data the get one voltage value at the end.
DOI: 10.17632/v4hb3cp7zt.1
title: Clinical observation of different doses of rituximab for the treatment of severe pemphigus: A single-center prospective cohort study

description: Clinical observation of different doses of rituximab for the treatment of severe pemphigus: A single-center prospective cohort study

Supplemental Figure 1
(A, B) Percentage of peripheral B and T lymphocytes. (C, D) Anti-desmoglein (Dsg) 1 and Dsg 3 enzyme-linked immunosorbent assay (ELISA) indices. The dashed line in panels C and D represents the cutoff values proposed by the manufacturer for the anti-Dsg 1 and Dsg 3 antibodies.
DOI: 10.17632/ftzcbgk8wh.2
title: Mechanical coupling of 3D lattice materials discovered by micropolar elasticity and geometric symmetry

description: The Mathematica code of the paper "Mechanical coupling of 3D lattice materials discovered by micropolar elasticity and geometric symmetry".
DOI: 10.21227/16ca-c879
title: MonkeyPox2022Tweets: The First Public Twitter Dataset on the 2022 MonkeyPox Outbreak

description: Please cite the following paper when using this dataset:N. Thakur, “MonkeyPox2022Tweets: The first public Twitter dataset on the 2022 MonkeyPox outbreak,” Preprints, 2022, DOI: 10.20944/preprints202206.0172.v1AbstractThe world is currently facing an outbreak of the monkeypox virus, and confirmed cases have been reported from 28 countries. Following a recent “emergency meeting”, the World Health Organization is considering whether the outbreak should be assessed as a “potential public health emergency of international concern” or PHEIC, as was done for the COVID-19 and Ebola outbreaks in the past. During this time, people from all over the world are using social media platforms, such as Twitter, for information seeking and sharing related to the outbreak, as well as for familiarizing themselves with the guidelines and protocols that are being recommended by various policy-making bodies to reduce the spread of the virus. This is resulting in the generation of tremendous amounts of Big Data related to such paradigms of social media behavior. Mining this Big Data and compiling it in the form of a dataset can serve a wide range of use-cases and applications such as analysis of public opinions, interests, views, perspectives, attitudes, and sentiment towards this outbreak. Therefore, this work presents MonkeyPox2022Tweets, an open-access dataset of Tweets related to the 2022 monkeypox outbreak that were posted on Twitter since the first detected case of this outbreak on May 7, 2022. The dataset is compliant with the privacy policy, developer agreement, and guidelines for content redistribution of Twitter, as well as with the FAIR principles (Findability, Accessibility, Interoperability, and Reusability) principles for scientific data management.Data DescriptionThe dataset consists of a total of 102,452 tweet IDs of the same number of tweets about monkeypox that were posted on Twitter from 7th May 2022 to 26th June 2022 (the most recent date at the time of dataset upload). The Tweet IDs are presented in 4 different .txt files based on the timelines of the associated tweets. The following table provides the details of these dataset files.FilenameNo. of Tweet IDsDate Range of the Tweet IDsTweetIDs_Part1.txt13926May 7, 2022 to May 21, 2022TweetIDs_Part2.txt17705May 21, 2022 to May 27, 2022TweetIDs_Part3.txt17585May 27, 2022 to June 5, 2022TweetIDs_Part4.txt19718June 5, 2022 to June 11, 2022TweetIDs_Part5.txt33518June 12, 2022 to June 26, 2022          The dataset contains only Tweet IDs in compliance with the terms and conditions mentioned in the privacy policy, developer agreement, and guidelines for content redistribution of Twitter. The Tweet IDs need to be hydrated to be used. For hydrating this dataset the Hydrator application (link to download and a step-by-step tutorial on how to use Hydrator) may be used.
DOI: 10.17632/h5wgkrfsk4.1
title: DIB-D-21-01837

description: Data for violet light excitable cyclic AMP indicator
DOI: 10.6084/m9.figshare.20161541
title: Motivational trade-off video data

description: The behavioural events recorded from the video analysis for the motivational trade-off experiment, as well as subject IDs, temperature and sucrose conditions, bout numbers, colony IDs and position of feeders.
DOI: 10.5281/zenodo.6513445
title: Replication Package for the Paper: "Potential Technical Debt and Its Resolution in Code Reviews: An Exploratory Study of the OpenStack and Qt Communities"

description: This is the replication package for the paper: "Potential Technical Debt and Its Resolution in Code Reviews: An Exploratory Study of the OpenStack and Qt Communities", including the dataset and its description (README.md): <strong>PTD-related Comments in Code Review and Data Extraction Results.xlsx</strong> is the dataset of our paper, which contains 2,030 review comments collected from the Nova project and Neutron project of OpenStack community. Among all the review comments, 163 review comments indicate PTD. For the rows of review comments that are related to PTD, we filled them with blue color as an indicator. <strong>README.md</strong>
DOI: 10.6084/m9.figshare.16543539
title: Supplemental tables S2-S7

description: Supplemental tables S2-S7
DOI: 10.6084/m9.figshare.16543539.v1
title: Supplemental tables S2-S7

description: Supplemental tables S2-S7
DOI: 10.5281/zenodo.6760232
title: Leptodoras oyakawai decontaminated gx

description: .
DOI: 10.5281/zenodo.6760231
title: Leptodoras oyakawai decontaminated gx

description: .
DOI: 10.17632/g38w5868fc.1
title: LINF_290026500

description: DnaJ domain-containing protein | JDP57 | J57
Leishmania infantum (strain JPCM5)
DOI: 10.17632/pnd569zz37.1
title: LINF_290027100

description: protein farnesyltransferase alpha subunit
Leishmania infantum (strain JPCM5)
DOI: 10.17632/7g4hyb8ff3.1
title: LINF_290027200

description: Fumarate hydratase class I, cytosolic | FHc | FH-2
Leishmania infantum (strain JPCM5)
DOI: 10.17632/wn7d7f39wr.1
title: LINF_290027400

description: Hook complex subunit
Leishmania infantum (strain JPCM5)
DOI: 10.17632/mpnbj7cxm2.1
title: LINF_290027900

description: 5’-AMP-activated protein kinase catalytic subunit alpha | AMPKa
Leishmania infantum (strain JPCM5)