cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5510422.v1
title: Canine fecal samples

description: To determine the optimal method for fecal DNA preservation, we collected fecal samples from one canine donor and stored aliquots in RNAlater, 70% ethanol, 50:50 glycerol:PBS, or without buffer at 25°C, 4°C, and -80°C. Fecal DNA was extracted, quantified, and 16S rRNA gene analysis performed on days 0, 7, 14, and 56 to evaluate changes in DNA concentration, purity, and microbial diversity and composition over time
DOI: 10.3535/633-cma-bgp
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w15-e05-0kl
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/89d5zb5jjy
title: HoloTrap: Interactive hologram design for multiple dynamic optical trapping

description: Abstract This work presents an application that generates real-time holograms to be displayed on a holographic optical tweezers setup; a technique that allows the manipulation of particles in the range from micrometres to nanometres. The software is written in Java, and uses random binary masks to generate the holograms. It allows customization of several parameters that are dependent on the experimental setup, such as the specific characteristics of the device displaying the hologram, or the presence... Title of program: HoloTrap Catalogue Id: ADZB_v1_0 Nature of problem To calculate and display holograms for generating multiple and dynamic optical tweezers to be reconfigured interactively. Versions of this program held in the CPC repository in Mendeley Data ADZB_v1_0; HoloTrap; 10.1016/j.cpc.2007.03.003 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.3535/tq4-3qs-575
title: Pterygotus osiliensis Schmidt

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xpk-703-4t2
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11341238.v1
title: Table S2. Cosinor analysis of field behavior from Bivalve mollusk circadian clock genes can run at tidal frequency

description: Field chronobiological analysis of individual oyster behavior
DOI: 10.6084/m9.figshare.22698151.v1
title: Part 1.zip

description: This directory compiles raw and source data supporting figures from Fuchs et al. "Defining the landscape of circular RNAs in neuroblastoma unveils a global suppressive function of MYCN".
DOI: 10.6084/m9.figshare.26053936.v3
title: Supplementary data for the manuscript titled "Integrative genomic reconstruction of carbohydrate utilization networks in bifidobacteria: global trends, local variability, and dietary adaptation"

description: This dataset contains FASTA files of 263 reference <i>Bifidobacterium</i> genomes that were used for manual metabolic reconstruction:Nucleotide FASTAProtein FASTA files with curated mcSEED annotations<br>
DOI: 10.6084/m9.figshare.28287302.v1
title: Paper_Scarpelli_et_al..xlsx

description: Manuscript: Resistance training‑induced changes in muscle proteolysis and extracellular matrix remodeling biomarkers in the untrained and trained statesPMID: 38653795
DOI: 10.6084/m9.figshare.28375454.v1
title: <b>Other’s busy or leisure life: how status-presentation on social media affects observers’ responses to service failure</b>

description: We conducted two experiment studies. Experiment 1 examined the effect of consumers' busy or leisure state on the the observers’ malicious envy and benign envy of these consumers,and explored the role of observers' perceived economic mobility as the the boundary condition. Experiment 2 explored the downstream influence of this effect, and found that when leisure consumers encounter service failures, observers’ negative attitudes toward the service provider do not increase, particularly among those with high perceptions of social mobility. This effect was mediated by the observers’ malicious envy of leisure people. On the contrary, when observers with high perceived social mobility experience benign envy toward those who frequently post their busy status on social media, it amplifies their negative evaluations of companies that deliver failed services to them.
DOI: 10.3535/d5q-s4s-r0h
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tce-lnb-bh4
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1314900.v3
title: HIGGS Background Events for Machine Learning

description: Background (y=0) events from the first one million events in the HIGGS machine learning dataset at: http://archive.ics.uci.edu/ml/datasets/HIGGS The data has been produced using Monte Carlo simulations. The first 21 features (columns 2-22) are kinematic properties measured by the particle detectors in the accelerator. The last seven features are functions of the first 21 features; these are high-level features derived by physicists to help discriminate between the two classes. There is an interest in using deep learning methods to obviate the need for physicists to manually develop such features. Benchmark results using Bayesian Decision Trees from a standard physics package and 5-layer neural networks are presented in a paper here: http://rdcu.be/cb58. In the Nature paper the full dataset was used, not just hte first 1million which were uploaded here.
DOI: 10.17632/5hyvgs5ywj
title: Table VII: Finance poverty headcounts and energy consumption per capita

description: In the light of the above, thresholds of policy relevance are highlighted in bold in Table VII. It is essential to articulate the thresholds from the regressions, which are reported from the regressions estimates in the panels for all the representative poverty headcount ratios and finance (Credit to the private sector). They are 28.278 (1.872/0.0662) for hc$186ppp2011 and credit to the private sector in panel 5; 129.332 (1.239/0.00958) hc$250ppp2005 and credit to the private sector in Panel 7. All the thresholds are within policy range because they are within the minimum and maximum ranges provided by the summary statistics.
DOI: 10.3535/sej-xxy-cen
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w6x-1y5-rsg
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7890773.v1
title: gVCF_HG01443

description: 1000 Genomes gVCF mapped to hs37d5 for HG01443. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.3535/3y3-lmy-gvn
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xh7-07m-yxw
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11953674.v2
title: Osteoclast-specific eQTL results for osteoporosis risk variants (co-localised loci)

description: This dataset contains osteoclast-specific expression quantitative trait locus (eQTL) summary statistics for 21 genetic loci demonstrating co-localisation with estimated bone mineral density (eBMD) genome-wide association study (GWAS) association signals from Morris et al. (PMID 30598549). The data is provided in a single .xlsx file. The complete osteoclast eQTL dataset is publicly available on the GEnetic Factors for OSteoporosis Consortium (GEFOS) website (http://www.gefos.org/?q=content/human-osteoclast-eqtl-2018-2020).<br> The eQTL results were generated from a study of 158 osteoclast cell cultures (PMID 32216834, 29473973, 30705363). Genome-wide array genotyping was performed on genomic DNA samples from the study participants using the Illumina Infinium OmniExpress-24 BeadChip array, with imputation performed using the Haplotype Reference Consortium (HRC) release 1.1 reference panel. Transcriptome-wide quantitation of gene expression was performed on the osteoclast RNA samples using 50 bp single-end RNA-Seq on an Illumina HiSeq 2500. Trimmed mean of M-values (TMM) normalisation and correction for total read count by conversion to counts per million (CPM) was performed on the gene expression data using the edgeR package. The eQTL analysis was performed on the TMM-normalised CPM gene expression values using the FastQTL software, implementing quantile normalisation. Only variants with a MAF≥5% were included in the analysis, which was adjusted for the covariates patient age, RNA-Seq batch and 10 genomic principal components.
DOI: 10.6084/m9.figshare.12436667.v1
title: Proteomic Database.xlsx

description: List of all proteins that were identified in the intestinal extracellular vesicles of Sham pair-fed and Vertical Sleeve Gastrectomy mice.
DOI: 10.6084/m9.figshare.27051370.v5
title: <b>SWMM_triple.xlsx</b>

description: <b>This is a triplet dataset and code related to the </b><b>Storm water management model (</b><b>SWMM), mainly including fields such as </b><b><i>UID, theme, subclass of flood disaster, and software tools</i></b><b>. This dataset is based on academic literature related to flood disasters, and uses the BiLSTM-CRF model to extract SWMM entities. On this basis, articles that use the SWMM model to study flood disasters were screened, and the corresponding flood disaster subcategories, research themes, and software tools used were extracted with the help of natural language processing technology, </b><b> thereby obtaining an overall trend of studying flood disasters with the SWMM model.</b>
DOI: 10.6084/m9.figshare.28509869.v2
title: <i>AG genome</i>

description: <i>AG genome</i>
DOI: 10.17632/9vb9x7bv4x
title: Programs for the molecular dynamics simulation of liquids: I. Spherical molecules with short-ranged interactions

description: Title of program: MDATOM Catalogue Id: ABVO_v1_0 Nature of problem Study of the thermodynamic, structural and dynamic properties of liquids or solids. Versions of this program held in the CPC repository in Mendeley Data ABVO_v1_0; MDATOM; 10.1016/0010-4655(80)90043-0 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/jtts2d7dtg
title: Data for: Fully synthetic neuroimaging data for replication and exploration.

description: The fully synthetic neuroimaging dataset generated for analysis of fully synthetic data in the current study are available as Research Data from Mendeley Data. Ten fully synthetic datasets are included, with synthetic gray matter images (nifti files) that were generated based on simulated participant data (text files). The file Synthetic_predictors.tar.gz contains ten fully synthetic predictor tables with information for 264 simulated subjects. Due to large file sizes, a separate archive was created for each set of synthetic gray matter image data: RBS001.tar.gz, …, RBS010.tar.gz. Regression analyses were performed for each synthetic dataset, then average statistic maps were made for each contrast, which were then smoothed (see accompanying paper for additional information).

The supplementary materials also include commented MATLAB and R code to implement the current neuroimaging data synthesis methods (SKexample.zip). The example data were selected from an earlier fMRI study (Kuchinsky et al., 2012) to demonstrate that the current approach can be used with other types of neuroimaging data. The example code can also be adapted to produce fully synthetic group-level datasets based on observed neuroimaging data from other sources. The zip archive includes a document with important information for performing the example analyses, and details that should be communicated with recipients of a synthetic neuroimaging dataset.

Kuchinsky, S.E., Vaden, K.I., Keren, N.I., Harris, K.C., Ahlstrom, J.B., Dubno, J.R., Eckert, M.A., 2012. Word intelligibility and age predict visual cortex activity during word listening. Cerebral Cortex 22, 1360–71. https://doi.org/10.1093/cercor/bhr211
DOI: 10.3535/9yj-qr1-b7t
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wvj-bqh-r4c
title: Eurypterida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4gx-z47-sja
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p4p-dhp-svj
title: Eurypterida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13522187.v1
title: Full dataset used for IRT analysis on L-POST

description: # SUBTEST LABELS IN DATA (SUBTEST_ID) # 0 Fine shape discrimination # 1 Dot lattices # 2 RFP contour integration # 3 Shape ratio discrimination (Efron) # 4 Figure ground segmentation # 5 Kinetic object segmentation # 6 RFP texture surfaces # 7 RFP Fragmented outline # 8 Biological motion # 9 Recognition of missing part # 10 Global Motion detection # 11 Dot counting # 12 Recognition of objects in isolation # 13 Embedded figure detection # 14 Recognition of objects in a scene
DOI: 10.6084/m9.figshare.14323437.v1
title: Effects of CFRP retrofit on impact response of shear-deficient scaled reinforced concrete beams

description: An experimental procedure is carried out to investigate response features of semi-deep reinforced concrete (RC) beams with dominant static shear failure subjected to low-velocity impact dynamic load both in intact and retrofitted cases. Built specimens have scaled geometry and material properties preserving physical similarity with full-scale members and are strengthened using externally bonded carbon fiber reinforced polymer (CFRP) sheets. Conducted tests gather reliable and robust data revealing notable stiffness and strength recovery within skin attachment. Desired performance criterion is detected here as concrete flexural cracking along span only when brittle shear collapse is prevented. Peak absorbed impulse capacity is attained for unidirectional carbon fiber retrofit. Stiffness is recovered initially during first impacts and then starts degrading due to rupture of horizontal fibers in cross-ply retrofit, but provided stiffness is stable for unidirectional retrofit during all impacts.
DOI: 10.6084/m9.figshare.23541069.v1
title: Global dataset with mammal species diet specialization and distribution range

description: Global dataset with mammal species diet specialization and distribution range For each mammal species, are indicated the preferences of type of diet, body mass (g), distribution range (km2) and values of diet specialization index based on the Gini coefficient of inequality. The values of diet preferences for each mammal species, expressed as a percentage, were taken from Wilman et al. 2014. The level of diet specialization was calculated following the methodology described in Morelli et al. 2019, to estimate the degree of diet specialization of each mammal species using the Gini index of inequality.
DOI: 10.6084/m9.figshare.26037883.v1
title: Unannotated MAGs (WGS) and OTUs (16S rRNA gene sequencing) from bioaugmented biogas reactors

description: Biomethanation represents a promising approach for biomethane production while biofilm-based process, e.g. trickle bed reactor (TBR), is one of the most efficient solutions. There are challenges to maintain stable performance and debates between pure and mix culture approaches. This study introduces inoculum contains enriched hydrogenotrophic methanogens to TBR as bioaugmentation to access their impacts on the process and, microbial community dynamics. During the enrichment experiment, two samples were collected at start (timepoint 0), and after 1 month, 2 months and 3 months, constituting a total 8 samples for 16S rRNA gene sequencing. For metagenome sequencing, a total 12 samples were collected. Two samples were collected from the raw inoculum and two samples were collected from the enriched inoculum. Then, for the trickle bed reactor experiment, four samples were collected from the TBR-Control and four samples from the TBR-Bio. The TBR samples constituted two samples of the liquid fraction and two samples of the solid fraction/biofilm at the end of the reactor experiment. All samples for microbial analysis were frozen at -18 <sup>°</sup>C immediately, following shipment to a commercial company for analyses (DNASense, 9220 Aalborg, Denmark) in an insulated package containing 5 kg dry ice. The biofilm samples constituted a whole biofilm carrier (Jensen et al., 2019). DNA extraction, 16S rRNA gene sequencing, and metagenomic sequencing was performed by DNASense. Briefly, DNA for 16S rRNA gene sequencing was extracted using the FastDNA Spin Kit for Soil (MP Biomedicals, USA) and paired-end sequenced (2x300 bp) using the MiSeq platform (Illumina, USA). Similarly, DNA for whole genome sequencing was extracted using the DNeasy PowerSoil Pro Kit (Qiagen, Germany) and sequenced on the PromethION P24 platform (Oxford Nanopore Technologies, Oxford, UK).<br>
DOI: 10.17632/khfvjhx4vb
title: Automated tip functionalization via machine learning in scanning probe microscopy

description: Auto-CO-AFM is an open-source software package for scanning probe microscopes that enables the automatic functionalization of scanning probe tips with carbon monoxide molecules. This enables machine operators to specify the quality of the tip needed utilizing a pre-trained library with off-the-shelf software. From a single image, the software package can determine which molecules on a surface are carbon monoxide, perform the necessary tip functionalization procedures, interface with microscope software to control the tip position, and determines the centeredness of the tip after a successful functionalization. This is of particular interest for atomic force microscopy imaging of molecules on surfaces, where the tip functionalization is a necessary and time consuming step needed for sub-molecular resolution imaging. This package is freely available under the MIT License.
DOI: 10.3535/ahq-qwl-n3j
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cjt-xn8-6eq
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24437920.v1
title: Leaf impulse responses

description: Impulse responses from single leaves. Each IR is 400 dimensional, and the labels correspond to leaf species, leaf size, elevation viewing angle and azimuth angle.
DOI: 10.3535/b90-jtn-a3g
title: Eurypterida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hg4-s96-p1n
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12560648.v1
title: Additional file 1 of Discovery of CD80 and CD86 as recent activation markers on regulatory T cells by protein-RNA single-cell analysis

description: Additional file 1: Table S1. FACS and AbSeq anti-human monoclonal antibodies used in this study.
DOI: 10.6084/m9.figshare.24967593.v1
title: Data for manuscript "Wandering principal optical axes in van der Waals triclinic materials"

description: Data for manuscript "Wandering principal optical axes in van der Waals triclinic materials"
DOI: 10.3535/qv3-krq-dmr
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/v0z-7x7-f3m
title: Pterygotus sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23945475.v5
title: 面向再制造、考虑机器加工资格约束的节能阻塞混合流水车间调度问题建模及求解

description: 这是 "面向再制造、考虑机器加工资格约束的节能阻塞混合流水车间调度问题建模及求解 "的专利的实验数据。所有数据均通过计算机模拟生成，并以 csv 格式保存在文件中。这些实验共有12个不同规模的实例。数据集的信息显示在 csv 文件中，包括 EOL 产品数量、操作和并行站数量、与时间消耗和能源消耗相关的变量、有限缓冲区的容量以及与机器资格相关的数据。
DOI: 10.3535/zv1-akf-lsq
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5ct-tya-v9h
title: Eurypterida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6ft-y1e-seb
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1549680.v5
title: Fried & Kievit (2015). The volumes of subcortical regions in depressed and healthy individuals are strikingly similar: A reinterpretation of the results by Schmaal et al. 2015

description: Code and data for Fried & Kievit 2015.
DOI: 10.6084/m9.figshare.24849540.v1
title: Jinbei (JB) coal base

description: The annual maximum NDVI dataset of Jinbei (JB) coal base in China (2013-2022).<br>
DOI: 10.3535/vy8-ql4-z0e
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26674721.v1
title: Additional file 1 of Forest-goers as a heterogeneous population at high-risk for malaria: a case–control study in Aceh Province, Indonesia

description: Additional file 1: Table S1. Distribution of demographic variables of cases by species. *Socioeconomic status (SES) measure: represented as the lowest quartile of the first component of the principal analysis.
DOI: 10.17632/bmgx9pnrrg
title: IL-34 attenuates TCMR of KT

description: original data
DOI: 10.3535/7y3-zhh-mbq
title: Eurypterida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/h00-5mj-73j
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14905158.v1
title: AnGeLi database

description: The full AnGeLi database from Bahler lab, UCL<br>
DOI: 10.6084/m9.figshare.16462969.v1
title: Formative and Validation Human Factors studies of a new disposable autoinjector for subcutaneous delivery of chronic disease therapies

description: Use-related risks related to autoinjector devices have been previously identified. To minimize these problems, the identification of potential use errors is a critical task during device development. This article presents iterative human factor studies, which aim to assess user interaction with the tested push-on-skin BD Intevia™ 1 mL Disposable Autoinjector, across a wide range of indications, and a broad user population. Through the different human factor studies, use errors were recorded when the participants completed the critical tasks, but their occurrence continuously decreased. First, the incidence of use errors was reduced when the participants read the IFU. In addition, the IFU updates and design change implemented contributed to improve the usability performance. During the validation study, some use errors were still observed, mainly during the first uses. Nevertheless, providing a training to the participants almost fully eliminated the remaining use errors. Thus, these results demonstrated that this new autoinjector can be safely and efficiently used for its intended uses and under the expected use conditions by all tested user groups.
DOI: 10.3535/h5k-mt7-jwn
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pyw-kdd-72v
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3515621.v1
title: Appendix A. Beta-distribution moments and parameter estimation.

description: Beta-distribution moments and parameter estimation.