cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1199800.10fu
title: SH1199800.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.y63ngj
title: Occurrence Download

description: A dataset containing 2083292 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gallinago gallinago (Linnaeus, 1758)"
 ]
}

 The dataset includes 2083292 records from 2007 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006549-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/wxc7b8
title: Données de la quête INPN Espèces : Les écrevisses du Tarn, vous ne pincerez pas votre tour !

description: La Fédération du Tarn pour la Pêche et la Protection du Milieu Aquatique sollicite votre aide pour son enquête sur les écrevisses du département lancée en 2021. <br>

Cinq espèces sont actuellement présentes dans le département : l’Écrevisse à pattes blanches, l’Écrevisse à pattes grêles, l’Écrevisse américaine, l’Écrevisse signal et l’Écrevisse de Louisiane.<br>

Les deux premières espèces sont autochtones du département du Tarn. <br>

L’Écrevisse à pattes blanches est menacée et protégée au niveau local, d’autant plus qu’elle est un excellent bioindicateur. Elle peut être confondue au premier abord par l’Écrevisse américaine a un rostre triangulaire, et son exosquelette et la rugosité de ses pinces sont gris. De par son statut de protection, il est interdit de la manipuler.<br>

L’Écrevisse américaine a une couleur sombre (noir-verdâtre) avec des marques brunes-orangées typiques sur l’abdomen alors que la couleur rouge caractéristique de l’Écrevisse de Louisiane et l’aspect granuleux de sa carapace et des pinces la rendent relativement simple à identifier.<br>

<br>

L’Écrevisse signal, reconnaissable quant à elle par ses taches blanches à la commissure de ses pinces, est une très grande concurrente des écrevisses autochtones du Tarn et tend à les remplacer. Il ne faut pas la confondre avec l’écrevisse à pattes blanches qui a la face interne des pinces entièrement blanches. <br>

Enfin, les Écrevisses américaine, signal et de Louisiane sont également porteuses saines de la peste de l’écrevisse. Leur gestion est indispensable pour protéger les espèces autochtones.<br>

<br>

Étudier ces populations est donc nécessaire pour limiter leur propagation ou rendre plus facile leur conservation selon les espèces. La découverte de nouvelles populations ou de nouvelles confirmations de présence pourraient ainsi être utiles dans le cadre des inventaires portés par la Fédération.
DOI: 10.15468/mxmvht
title: NATURING_CS_Observation_2020

description: 2020 Citizien Science Observation Via NATURING (Citizen Science Platform)
DOI: 10.5281/zenodo.17475775
title: Research Software Practices & Needs @LUMC

description: Survey questions and results (with personal information removed) on research software practices & needs at Leiden University Medical Center.
DOI: 10.5281/zenodo.17475776
title: Research Software Practices & Needs @LUMC

description: Survey questions and results (with personal information removed) on research software practices & needs at Leiden University Medical Center.
DOI: 10.15468/k6zs88
title: Phytoplankton microscopic observations from the FjordPhyto Citizen Science Project of the 2017-2018 Antarctic season

description: Phytoplankton data acquired by microscopic counts of seawater samples collected as part of the FjordPhyto citizen science project (www.fjordphyto.org) during the 2017-2018 summer season along the Antarctic Peninsula
DOI: 10.15468/7rlf4q
title: New Zealand Flatworm (Arthurdendyus triangulatus) records for Scotland 2008-2014

description: The dataset comprises 'citizen science' records, reporting sightings by the public of New Zealand Flatworms in Scotland.
DOI: 10.5281/zenodo.17078896
title: Evaluation data for "R+R: IoT Device Identification under Realistic Conditions"
DOI: 10.5281/zenodo.17078897
title: Evaluation data for "R+R: IoT Device Identification under Realistic Conditions"
DOI: 10.5281/zenodo.15272794
title: Data from: Eastern Screech-Owl (Megascops asio maxwelliae) response to tree cover and climate in an understudied portion of its range

description: The habitat needs of common species can be understudied due to a focus on rarity and the prevention of extinction within traditional conservation policy and practice. Yet even common species are not immune to anthropogenic pressures on the environment, and understanding habitat needs for common species is critical information for management. This is the case for Eastern Screech-Owl (Megascops asio), a common species that is poorly studied in the west/northwest portion of its broad range across the central and eastern United States. Our objective was to explore environmental factors associated with Eastern Screech-Owl (maxwelliae subspecies) breeding season occupancy dynamics in this understudied region and to inform local land management efforts. To address this objective, we used 9 years of occupancy data (2013–2021) from a participatory science monitoring program in a mid-sized suburban city (Fort Collins, Colorado, USA). We found that Eastern Screech-Owl persistence probability decreased while colonization probability increased with aggregation of tree cover and average breeding season temperature. We also found colonization probability increased with cumulative winter precipitation, and persistence probability decreased with average winter minimum temperature. Overall, our results suggest that this population of Eastern Screech-Owls responds to climate before and during the breeding season in complex ways, and that this species appears to experience high turnover in this study area along the western edge of its continental range. Our study highlights the importance of investigating how common species respond to their environment across the full extent of their distributions.
description: R scripts, including dynamic occupancy model, and data used to estimate the influence of environmental factors associated with Eastern Screech-Owl breeding season occupancy dynamics from 2013–2021 in Fort Collins, Colorado, USA.
DOI: 10.5281/zenodo.15272795
title: Data from: Eastern Screech-Owl (Megascops asio maxwelliae) response to tree cover and climate in an understudied portion of its range

description: The habitat needs of common species can be understudied due to a focus on rarity and the prevention of extinction within traditional conservation policy and practice. Yet even common species are not immune to anthropogenic pressures on the environment, and understanding habitat needs for common species is critical information for management. This is the case for Eastern Screech-Owl (Megascops asio), a common species that is poorly studied in the west/northwest portion of its broad range across the central and eastern United States. Our objective was to explore environmental factors associated with Eastern Screech-Owl (maxwelliae subspecies) breeding season occupancy dynamics in this understudied region and to inform local land management efforts. To address this objective, we used 9 years of occupancy data (2013–2021) from a participatory science monitoring program in a mid-sized suburban city (Fort Collins, Colorado, USA). We found that Eastern Screech-Owl persistence probability decreased while colonization probability increased with aggregation of tree cover and average breeding season temperature. We also found colonization probability increased with cumulative winter precipitation, and persistence probability decreased with average winter minimum temperature. Overall, our results suggest that this population of Eastern Screech-Owls responds to climate before and during the breeding season in complex ways, and that this species appears to experience high turnover in this study area along the western edge of its continental range. Our study highlights the importance of investigating how common species respond to their environment across the full extent of their distributions.
description: R scripts, including dynamic occupancy model, and data used to estimate the influence of environmental factors associated with Eastern Screech-Owl breeding season occupancy dynamics from 2013–2021 in Fort Collins, Colorado, USA.
DOI: 10.15468/q4mfcm
title: The flora at Mula river, from Wakad to Bopodi, Pune, India

description: The dataset consists of geotagged and photographic observations of various trees, shrubs and climbers at the Mula river banks, from Wakad to Aundh in Pune (Maharashtra, India).

The survey was carried out through an intensive citizen science project covering about 4 kilometers on both sides of the Mula river, where this pristine, dense and biodiversity-rich riparian forest is present, right at the heart of the city.

The study involved more than 200 citizens and college students actively observing these flora over a period of five months, on almost all weekends including a few difficult rainy days. Botanical experts guided these observers in the survey for identification and later cleanse the data.
DOI: 10.5281/zenodo.16920838
title: Resilience of riparian spiders to floods: evidence from a mesocosm study

description: This dataset is based on a mesocosm experiment investigating the impact of flood duration on riparian spider communities. We used the Riparian Stream Mesocosm (RSM) in Landau University, Germany, to simulate four floods between May a September 2023 of various duration. This facility comprised 16 independent mesocosms, each designed to replicate a riparian ecosystem, including both an artificial stream and its adjacent riparian area. Each artificial stream was continuously fed with water pumped from the nearby river Queich. Each mesocosm was enclosed within a 3.5 m-high greenhouse-like structure covered by 1 mm mesh gauze. Spiders were sampled before and after each flood with pitfall traps and identified to species (when adult). 

Flume: Mesocosm unit, [1-16], each one was attributed with a treatment for the complete duration of the experiment

Treatment: 0, 3, 7, 14 - flood duration in days, 0 for control that were never flooded

 Trap: Pitfall or window trap

Area: Mesocosm were "divided" in two area. a flooded area (FLD) that was submerged during flooding (downstream part of the mesocosm) and the refuge area (REF) that was never flooded in the upstream part.

Dist_stream: To minimize edge effect and account for potential influence of stream proximinity, pitfall were placed at varying distances from the stream with one trap in each intervals for each area (4 traps per area). Intervals :  A - [0-70cm] / B - [70cm-140cm] / C - [140c-210cm] / D - [210cm-280cm]

Position: Traps were randomly distributed along the upstream-downstream gradient. Position is composed of a letter (A, B, C, D), accounting for the distance to the stream and a number [1-8] for position within the mesocosm, 1 being the most downstream trap and 8 the most upstream.

Timing: Time of the sampling, BF stand for Before Flood, AF for After Flood

Cycle: Flood 1 occured mid May, Flood 2 mid June, Flood 3 end of July early August, Flood 4 mid september

sp_full: complete genus and species name of each individual identify

Taxa: Most precise taxonomical level available for each spider collected e.g., genus+species for adult, only family or genus for the juveniles

Sex: m = male / f=female / j=juvenile
DOI: 10.5281/zenodo.16920839
title: Resilience of riparian spiders to floods: evidence from a mesocosm study

description: This dataset is based on a mesocosm experiment investigating the impact of flood duration on riparian spider communities. We used the Riparian Stream Mesocosm (RSM) in Landau University, Germany, to simulate four floods between May a September 2023 of various duration. This facility comprised 16 independent mesocosms, each designed to replicate a riparian ecosystem, including both an artificial stream and its adjacent riparian area. Each artificial stream was continuously fed with water pumped from the nearby river Queich. Each mesocosm was enclosed within a 3.5 m-high greenhouse-like structure covered by 1 mm mesh gauze. Spiders were sampled before and after each flood with pitfall traps and identified to species (when adult). 

Flume: Mesocosm unit, [1-16], each one was attributed with a treatment for the complete duration of the experiment

Treatment: 0, 3, 7, 14 - flood duration in days, 0 for control that were never flooded

 Trap: Pitfall or window trap

Area: Mesocosm were "divided" in two area. a flooded area (FLD) that was submerged during flooding (downstream part of the mesocosm) and the refuge area (REF) that was never flooded in the upstream part.

Dist_stream: To minimize edge effect and account for potential influence of stream proximinity, pitfall were placed at varying distances from the stream with one trap in each intervals for each area (4 traps per area). Intervals :  A - [0-70cm] / B - [70cm-140cm] / C - [140c-210cm] / D - [210cm-280cm]

Position: Traps were randomly distributed along the upstream-downstream gradient. Position is composed of a letter (A, B, C, D), accounting for the distance to the stream and a number [1-8] for position within the mesocosm, 1 being the most downstream trap and 8 the most upstream.

Timing: Time of the sampling, BF stand for Before Flood, AF for After Flood

Cycle: Flood 1 occured mid May, Flood 2 mid June, Flood 3 end of July early August, Flood 4 mid september

sp_full: complete genus and species name of each individual identify

Taxa: Most precise taxonomical level available for each spider collected e.g., genus+species for adult, only family or genus for the juveniles

Sex: m = male / f=female / j=juvenile
DOI: 10.15468/dl.megu5s
title: Occurrence Download

description: A dataset containing 51551 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pontia daplidice",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "HasCoordinate is true"
 ]
}

 The dataset includes 51551 records from 627 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006554-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/5g2vcv
title: Atlas de la Biodiversité de l'Est Cantal - ABT EC - Programme de sciences participatives de l'Atlas de la biodiversité de l'Est Cantal - 2017 à 2019

description: Données issues du programme de sciences participatives de l'Atlas. Les données remontées ici sont celles validées par les partenaires de l'Atlas. Ce programme s'articule autour d'enquêtes thématiques invitant les habitants à rechercher certaines espèces.
DOI: 10.15468/7bzuqc
title: Observatoire de la Biodiversité des Jardins (OBJ)-Observatoire des bourdons

description: Créé en 2009 et co-porté par Vigie-Nature au Muséum national d'Histoire naturelle et par l'association Groupe Estuaires, l'Observatoire des bourdons est un programme de sciences participatives à destination du grand public et visant à suivre l'impact des activités humaines sur les bourdons dans les jardins privés et publics.
DOI: 10.15468/dl.n4edwd
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Czechia",
 "OccurrenceStatus is Present",
 "TaxonKey is Psilocybe semilanceata"
 ]
}

 The dataset includes 22 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006573-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/ovwnyg
title: Projet avidune - Etude de l'avifaune des dunes d'Aquitaine-Inventaire et suivi Avifaune

description: Le jeu de données contient des données de présence d'avifaune pour la campagne 2015 (avril/mai). Cette campagne a fait appel à des bénévoles.
L'heure de début et de fin du relevé est notée pour chaque relevé. 
Le dénombrement des individus et un code Atlas relatif au statut de nidification sont renseignés pour la majorité des observations.
DOI: 10.15468/s7c8qd
title: Tetraonid line transect surveys from Norway: Data from Finnmarkseiendommen (FeFo)

description: The dataset originates from a line transect survey program in Finnmark county in northern Norway carried out from 2000- and onward. The surveys are part of a national program - Hønsefuglportalen (http://honsefugl.nina.no), operated in close collaboration among NINA (www.nina.no), Nord University (www.nord.no), Inland Norway University of Applied Sciences (www.inn.no) as well as landowners responsible for grouse management on their properties (state-owned land on Finnmarkseiendommen (FeFo), Statskog, and Fjellstyrene, as well as several private landowners).In general, NINA offers common e-infrastructure for data entry, data curation, management of users and communication from the project (http://honsefugl.nina.no). NINA together with the involved universities are offering advice regarding sampling design, and has developed a standard field protocol used by all participating stakeholders. The specific part of the program carried out on FeFo's property is operated in collaboration between NINA and FeFo, with clear and distinct allocation of tasks and responsibilities between the parties. FeFo is responsible for conducting field work, as well as final decisions regarding allocation of transect lines among study areas.Surveys are carried out mainly by volunteer personnel instructed to follow standardized field protocols. Field work is carried out annually in August, with a team of two persons following pre-defined transect lines, using trained pointing dogs to search both sides of the transect line. When birds are observed, species, cluster size (separated into age- and sex classes), perpendicular distances from the transect line to the observed cluster of birds, GPS coordinates of the clusters and time of day are recorded. In addition, length (and geographical position) of the transect line is recorded, as well as some other auxiliary data.
DOI: 10.34810/data2610
title: Videoassaig. Visions del rural ressituat

description: Visions del rural ressituat és d’un vídeo assaig que planteja una reflexió sobre la ruralitat i a la forma en com els mitjans de comunicació en parlen. El text entrellaça quatre veus expertes: la geògrafa de la Universitat Pompeu Fabra, Rosa Cerarols; la directora del Museu Terra, Gemma Carbó; el periodista sonor i director de la sèrie de podcast Comarcal 947 de Catalunya Ràdio, Eloi Barrera; i el director de la revista Arrels, Josep Sucarrats. El document ens endinsa en la definició de la ruralitat, en les formes en què s’ha estereotipat, en nous models per parlar-ne i en plantejaments que permeten resignificar-la. 

Castelló. E. (2024) Visions del rural ressituat. Universitat Rovira i Virgili. Vídeoassaig.
DOI: 10.15468/dl.ej8ec9
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is National Census of the Iberian Wolf (2002-2003) - Packs"
 ]
}

 The dataset includes 63 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006575-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/ndb8cw
title: Cetacean Survey Data in Guishan Island Sea Area, Taiwan

description: Supported by CTBC Financial Holding Co., Ltd. and Taiwan Green Energy for Charity Association (TGECA), Ceta explorers Co., Ltd. has been conducting cetacean surveys in the sea area around Guishan Island, Taiwan.
This survey aims to study the behavior and habitat of local cetacean species, which can further help us understand their status and improve conservation strategies. Additionally, it allows whale-watching operators to promote local ecological knowledge and participate in the conservation of natural resources, aligning with the core principles of international sustainable tourism to achieve the vision of "human-whale coexistence."
DOI: 10.15468/dl.fvbptm
title: Occurrence Download

description: A dataset containing 519 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thomasomys laniger"
 ]
}

 The dataset includes 519 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006576-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34808/64gy-h933
title: Impact of MET2 gene deletion on the growth kinetics of C. albicans SC5314 cells

description: The datasets present results on the impact of MET2 gene deletion, which encodes homoserine acetyltransferase, on the growth kinetics of C. albicans SC5314 cells in various media.
Overnight cultures of C. albicans were washed twice with sterile phosphate-buffered saline (PBS). The cell suspensions were diluted to 2 × 10⁵ cells mL⁻¹. Aliquots of 100 µL were used to inoculate microtiter plate wells containing 100 µL of the appropriate medium. The microplates were incubated at 30 °C for 24 h, and cell density was measured spectrophotometrically (λ = 600 nm) using a TECAN Spark 10M microplate reader.
Media compositions:


YNB medium (with ammonium sulfate): YNB medium without amino acids, with ammonium sulfate, 2% (w/v) glucose, supplemented with 5 mM L-Met.


YNB medium (with sodium glutamate): YNB medium without amino acids and without ammonium sulfate, containing sodium glutamate, 2% (w/v) glucose, supplemented with 5 mM L-Met.


YEPG medium: 1% (w/v) yeast extract, 1% (w/v) peptone, and 2% (w/v) glucose.


RPMI 1640 medium: a balanced mixture of amino acids, vitamins, inorganic salts, and 2% (w/v) glucose, buffered with 0.165 M MOPS (pH 7.0).


The studies were financially supported from the project OPUS 20 financed by the National Science Centre (No. UMO-2020/39/B/NZ7/01519).