cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19028999
title: Additional file 1 of Runs of homozygosity in Swiss goats reveal genetic changes associated with domestication and modern selection

description: Additional file 1: Table S1. Accession numbers of the sequenced goats in this study. Information on 226 goats from different breeds and ENA accessions for the sequence data. Table S2. 344 ROH islands observed in the 11 caprine populations investigated. Chromosomes and end positions of 1-Mb windows harbouring ROH-regions are provided. Breeds with a ROH-proportion exceeding 80% in this 1-Mb window are indicated with 1. The table on the right gives a summary over the 29 autosomes and the number of ROH islands. Table S3. List of the 1220 annotated genes in the regions of ROH islands. For each gene, the chromosome number, the start- and end position, the number of SNVs are given within a gene and that is part of the ROH (X), and also the average proportion of individuals of each population that has the X-SNPs in an ROH. The rows with the eight genes selected for Table 3 are marked in grey. Table S4. Information and the 226 individual genotypes for the two protein coding variants in the STC1 and TSHR genes. Table S5. Frequencies of the reference alleles at the two coding variants in STC1 and TSHR in samples from the 1372 individual sequences collected by the The VarGoats Consortium different origins.
DOI: 10.6084/m9.figshare.19028999.v1
title: Additional file 1 of Runs of homozygosity in Swiss goats reveal genetic changes associated with domestication and modern selection

description: Additional file 1: Table S1. Accession numbers of the sequenced goats in this study. Information on 226 goats from different breeds and ENA accessions for the sequence data. Table S2. 344 ROH islands observed in the 11 caprine populations investigated. Chromosomes and end positions of 1-Mb windows harbouring ROH-regions are provided. Breeds with a ROH-proportion exceeding 80% in this 1-Mb window are indicated with 1. The table on the right gives a summary over the 29 autosomes and the number of ROH islands. Table S3. List of the 1220 annotated genes in the regions of ROH islands. For each gene, the chromosome number, the start- and end position, the number of SNVs are given within a gene and that is part of the ROH (X), and also the average proportion of individuals of each population that has the X-SNPs in an ROH. The rows with the eight genes selected for Table 3 are marked in grey. Table S4. Information and the 226 individual genotypes for the two protein coding variants in the STC1 and TSHR genes. Table S5. Frequencies of the reference alleles at the two coding variants in STC1 and TSHR in samples from the 1372 individual sequences collected by the The VarGoats Consortium different origins.
DOI: 10.6084/m9.figshare.19029084
title: Additional file 11 of Input from torus longitudinalis drives binocularity and spatial summation in zebrafish optic tectum

description: Additional file 11: Data S7. SMTL calcium responses during presentation of 30s ramp stimulus (xlsx 378kb).
DOI: 10.6084/m9.figshare.19029084.v1
title: Additional file 11 of Input from torus longitudinalis drives binocularity and spatial summation in zebrafish optic tectum

description: Additional file 11: Data S7. SMTL calcium responses during presentation of 30s ramp stimulus (xlsx 378kb).
DOI: 10.6084/m9.figshare.19029090
title: Additional file 2 of Input from torus longitudinalis drives binocularity and spatial summation in zebrafish optic tectum

description: Additional file 2: Data S1. Matlab code for linear SVM used to classify responses as On, OFF, or DUAL.
DOI: 10.6084/m9.figshare.19029090.v1
title: Additional file 2 of Input from torus longitudinalis drives binocularity and spatial summation in zebrafish optic tectum

description: Additional file 2: Data S1. Matlab code for linear SVM used to classify responses as On, OFF, or DUAL.
DOI: 10.6084/m9.figshare.19029093
title: Additional file 3 of Input from torus longitudinalis drives binocularity and spatial summation in zebrafish optic tectum

description: Additional file 3: Data S2. Pyramidal neuron calcium responses during presentation of 10s ramp stimulus (xlsx 500kb).
DOI: 10.6084/m9.figshare.19029093.v1
title: Additional file 3 of Input from torus longitudinalis drives binocularity and spatial summation in zebrafish optic tectum

description: Additional file 3: Data S2. Pyramidal neuron calcium responses during presentation of 10s ramp stimulus (xlsx 500kb).
DOI: 10.6084/m9.figshare.19029096
title: Additional file 4 of Input from torus longitudinalis drives binocularity and spatial summation in zebrafish optic tectum

description: Additional file 4: Data S3. Pyramidal neuron calcium responses during presentation of 30s ramp stimulus (xlsx 854kb).
DOI: 10.6084/m9.figshare.19029096.v1
title: Additional file 4 of Input from torus longitudinalis drives binocularity and spatial summation in zebrafish optic tectum

description: Additional file 4: Data S3. Pyramidal neuron calcium responses during presentation of 30s ramp stimulus (xlsx 854kb).
DOI: 10.6084/m9.figshare.19029099
title: Additional file 5 of Input from torus longitudinalis drives binocularity and spatial summation in zebrafish optic tectum

description: Additional file 5: Data S4. RGC calcium responses during presentation of 10s and 30s ramp stimuli (xlsx 742kb).
DOI: 10.6084/m9.figshare.19029099.v1
title: Additional file 5 of Input from torus longitudinalis drives binocularity and spatial summation in zebrafish optic tectum

description: Additional file 5: Data S4. RGC calcium responses during presentation of 10s and 30s ramp stimuli (xlsx 742kb).
DOI: 10.6084/m9.figshare.19029105.v1
title: Additional file 7 of Input from torus longitudinalis drives binocularity and spatial summation in zebrafish optic tectum

description: Additional file 7: Data S5. Pyramidal neuron calcium responses in enucleated larvae during presentation of 10s ramp stimulus (xlsx 871kb).
DOI: 10.6084/m9.figshare.19029105
title: Additional file 7 of Input from torus longitudinalis drives binocularity and spatial summation in zebrafish optic tectum

description: Additional file 7: Data S5. Pyramidal neuron calcium responses in enucleated larvae during presentation of 10s ramp stimulus (xlsx 871kb).
DOI: 10.6084/m9.figshare.19029111
title: Additional file 9 of Input from torus longitudinalis drives binocularity and spatial summation in zebrafish optic tectum

description: Additional file 9: Data S6. SMTL calcium responses during presentation of 10s ramp stimulus (xlsx 263kb).
DOI: 10.6084/m9.figshare.19029111.v1
title: Additional file 9 of Input from torus longitudinalis drives binocularity and spatial summation in zebrafish optic tectum

description: Additional file 9: Data S6. SMTL calcium responses during presentation of 10s ramp stimulus (xlsx 263kb).
DOI: 10.6084/m9.figshare.19029162
title: Additional file 2 of Development of a detection method for short-term slow slip events using GNSS data and its application to the Nankai subduction zone

description: Additional file 2. List of source parameters of all detected S-SSEs.
DOI: 10.6084/m9.figshare.19029162.v1
title: Additional file 2 of Development of a detection method for short-term slow slip events using GNSS data and its application to the Nankai subduction zone

description: Additional file 2. List of source parameters of all detected S-SSEs.
DOI: 10.6084/m9.figshare.19029219
title: Additional file 2 of Epigenetic landscape of drug responses revealed through large-scale ChIP-seq data analyses

description: Additional file 2: Table S1. List of CTD chemicals. Column 1, CTD ID; column 2, chemical name. Table S2. List of ChIP-seq experiments. Column 1, Experiment ID; column 2, ChIP-seq antigen. Table S3. Predicted chemical–TF associations using ChIPEA for Fig. 2c. a Testosterone; b Estradiol; c Tamibarotene; d Vorinostat; e JQ1 compound.
DOI: 10.6084/m9.figshare.19029219.v1
title: Additional file 2 of Epigenetic landscape of drug responses revealed through large-scale ChIP-seq data analyses

description: Additional file 2: Table S1. List of CTD chemicals. Column 1, CTD ID; column 2, chemical name. Table S2. List of ChIP-seq experiments. Column 1, Experiment ID; column 2, ChIP-seq antigen. Table S3. Predicted chemical–TF associations using ChIPEA for Fig. 2c. a Testosterone; b Estradiol; c Tamibarotene; d Vorinostat; e JQ1 compound.
DOI: 10.5281/zenodo.5831940
title: 2014 EPA National Emissions Inventory allocated to the grid cells of InMAP Source-Receptor Matrix

description: This dataset is the 2014 EPA National Emissions Inventory (NEI) v1 allocated to the individual grid cells of InMAP Source-Receptor Matrix (ISRM). The source types is classified by EPA Source Classification Codes (SCCs). The dataset includes emissions of both primary and secondary PM<sub>2.5</sub>. Secondary PM<sub>2.5</sub> includes four precursors: NO<sub>x</sub>, SO<sub>x</sub>, NH3, and VOC. The detailed description of emission processing is in Tessum et al. (2019). Each shapefile in the dataset is in the format of input file of InMAP/ISRM, which includes the emission amounts of five pollutants (Primary PM<sub>2.5</sub>, NO<sub>x</sub>, SO<sub>x</sub>, NH3, and VOC), stack information (height, diameter, temperature, and velocity), and SCCs. The unit of emissions is \(\mu g/s\). (If these emissions are used directly with the ISRM, the resulting outputs will be concentrations, in units of \(\mu g/m^3\).)
DOI: 10.5281/zenodo.5831939
title: 2014 EPA National Emissions Inventory allocated to the grid cells of InMAP Source-Receptor Matrix

description: This dataset is the 2014 EPA National Emissions Inventory (NEI) v1 allocated to the individual grid cells of InMAP Source-Receptor Matrix (ISRM). The source types is classified by EPA Source Classification Codes (SCCs). The dataset includes emissions of both primary and secondary PM<sub>2.5</sub>. Secondary PM<sub>2.5</sub> includes four precursors: NO<sub>x</sub>, SO<sub>x</sub>, NH3, and VOC. The detailed description of emission processing is in Tessum et al. (2019). Each shapefile in the dataset is in the format of input file of InMAP/ISRM, which includes the emission amounts of five pollutants (Primary PM<sub>2.5</sub>, NO<sub>x</sub>, SO<sub>x</sub>, NH3, and VOC), stack information (height, diameter, temperature, and velocity), and SCCs. The unit of emissions is \(\mu g/s\). (If these emissions are used directly with the ISRM, the resulting outputs will be concentrations, in units of \(\mu g/m^3\).)
DOI: 10.6084/m9.figshare.19029348
title: Additional file 10 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 10: Table S6. Lignin synthesis related genes that were up-regulated in SS1vsNSS and SS2vsNSS at the tasseling stage.
DOI: 10.6084/m9.figshare.19029348.v1
title: Additional file 10 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 10: Table S6. Lignin synthesis related genes that were up-regulated in SS1vsNSS and SS2vsNSS at the tasseling stage.
DOI: 10.6084/m9.figshare.19029351
title: Additional file 11 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 11: Table S7. List of selected plant-type cell wall organization-related genes that were up-regulated in SS1vsNSS and SS2vsNSS at the tasseling stage.
DOI: 10.6084/m9.figshare.19029351.v1
title: Additional file 11 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 11: Table S7. List of selected plant-type cell wall organization-related genes that were up-regulated in SS1vsNSS and SS2vsNSS at the tasseling stage.
DOI: 10.6084/m9.figshare.19029354
title: Additional file 12 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 12: Table S8. Differentially expressed transcription factors in SS1vsNSS and SS2vsNSS.
DOI: 10.6084/m9.figshare.19029354.v1
title: Additional file 12 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 12: Table S8. Differentially expressed transcription factors in SS1vsNSS and SS2vsNSS.
DOI: 10.6084/m9.figshare.19029357
title: Additional file 13 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 13: Table S9. RNA integrity number (RIN) values.
DOI: 10.6084/m9.figshare.19029357.v1
title: Additional file 13 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 13: Table S9. RNA integrity number (RIN) values.
DOI: 10.6084/m9.figshare.19029360
title: Additional file 14 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 14: Table S10. Primer sequences for qRT-PCR analysis.
DOI: 10.6084/m9.figshare.19029360.v1
title: Additional file 14 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 14: Table S10. Primer sequences for qRT-PCR analysis.
DOI: 10.6084/m9.figshare.19029375.v1
title: Additional file 5 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 5: Table S1. Summary of RNA-seq data.
DOI: 10.6084/m9.figshare.19029375
title: Additional file 5 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 5: Table S1. Summary of RNA-seq data.
DOI: 10.6084/m9.figshare.19029378.v1
title: Additional file 6 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 6: Table S2. List of selected genes related to hydrolase activity (hydrolyzing O-glycosyl compounds) that were up-regulated in SS1vsNSS and SS2vsNSS at the ninth leaf stage.
DOI: 10.6084/m9.figshare.19029378
title: Additional file 6 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 6: Table S2. List of selected genes related to hydrolase activity (hydrolyzing O-glycosyl compounds) that were up-regulated in SS1vsNSS and SS2vsNSS at the ninth leaf stage.
DOI: 10.6084/m9.figshare.19029381
title: Additional file 7 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 7: Table S3. List of selected cytoskeleton organization-related genes that were up-regulated in SS1vsNSS and SS2vsNSS at the ninth leaf stage.
DOI: 10.6084/m9.figshare.19029381.v1
title: Additional file 7 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 7: Table S3. List of selected cytoskeleton organization-related genes that were up-regulated in SS1vsNSS and SS2vsNSS at the ninth leaf stage.
DOI: 10.6084/m9.figshare.19029384
title: Additional file 8 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 8: Table S4. List of selected microtubule-based process-related genes that were up-regulated in SS1vsNSS and SS2vsNSS at the tasseling stage.
DOI: 10.6084/m9.figshare.19029384.v1
title: Additional file 8 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 8: Table S4. List of selected microtubule-based process-related genes that were up-regulated in SS1vsNSS and SS2vsNSS at the tasseling stage.
DOI: 10.6084/m9.figshare.19029387
title: Additional file 9 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 9: Table S5. List of selected genes related to transferase activity (transferring hexosyl groups) that were up-regulated in SS1vsNSS and SS2vsNSS at the tasseling stage.
DOI: 10.6084/m9.figshare.19029387.v1
title: Additional file 9 of Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength

description: Additional file 9: Table S5. List of selected genes related to transferase activity (transferring hexosyl groups) that were up-regulated in SS1vsNSS and SS2vsNSS at the tasseling stage.
DOI: 10.6084/m9.figshare.19029501
title: Additional file 10 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 10.
DOI: 10.6084/m9.figshare.19029501.v1
title: Additional file 10 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 10.
DOI: 10.6084/m9.figshare.19029504
title: Additional file 11 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 11.
DOI: 10.6084/m9.figshare.19029507
title: Additional file 12 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 12.
DOI: 10.6084/m9.figshare.19029507.v1
title: Additional file 12 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 12.
DOI: 10.6084/m9.figshare.19029504.v1
title: Additional file 11 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 11.
DOI: 10.6084/m9.figshare.19029510.v1
title: Additional file 13 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 13.
DOI: 10.6084/m9.figshare.19029513
title: Additional file 14 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 14.
DOI: 10.6084/m9.figshare.19029513.v1
title: Additional file 14 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 14.
DOI: 10.6084/m9.figshare.19029510
title: Additional file 13 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 13.
DOI: 10.6084/m9.figshare.19029516
title: Additional file 15 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 15.
DOI: 10.6084/m9.figshare.19029516.v1
title: Additional file 15 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 15.
DOI: 10.6084/m9.figshare.19029519
title: Additional file 16 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 16.
DOI: 10.6084/m9.figshare.19029519.v1
title: Additional file 16 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 16.
DOI: 10.6084/m9.figshare.19029522
title: Additional file 17 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 17.
DOI: 10.6084/m9.figshare.19029522.v1
title: Additional file 17 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 17.
DOI: 10.6084/m9.figshare.19029525.v1
title: Additional file 18 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 18.
DOI: 10.6084/m9.figshare.19029525
title: Additional file 18 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 18.
DOI: 10.6084/m9.figshare.19029546.v1
title: Additional file 7 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 7.
DOI: 10.6084/m9.figshare.19029546
title: Additional file 7 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 7.
DOI: 10.6084/m9.figshare.19029549
title: Additional file 8 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 8.
DOI: 10.6084/m9.figshare.19029549.v1
title: Additional file 8 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 8.
DOI: 10.6084/m9.figshare.19029552
title: Additional file 9 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 9.
DOI: 10.6084/m9.figshare.19029552.v1
title: Additional file 9 of A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation

description: Additional file 9.
DOI: 10.6084/m9.figshare.19029557.v1
title: Additional file 2 of Proteomic profiling in cerebral amyloid angiopathy reveals an overlap with CADASIL highlighting accumulation of HTRA1 and its substrates

description: Additional file 2. Results of the proteomic analysis of CAA brain microvessel extracts.
DOI: 10.6084/m9.figshare.19029554
title: Additional file 1 of Proteomic profiling in cerebral amyloid angiopathy reveals an overlap with CADASIL highlighting accumulation of HTRA1 and its substrates

description: Additional file 1. Levels of the amyloid species Aβ1-40 and Aβ1-42 in the microvessel extracts determined by ELISA.
DOI: 10.6084/m9.figshare.19029554.v1
title: Additional file 1 of Proteomic profiling in cerebral amyloid angiopathy reveals an overlap with CADASIL highlighting accumulation of HTRA1 and its substrates

description: Additional file 1. Levels of the amyloid species Aβ1-40 and Aβ1-42 in the microvessel extracts determined by ELISA.
DOI: 10.6084/m9.figshare.19029557
title: Additional file 2 of Proteomic profiling in cerebral amyloid angiopathy reveals an overlap with CADASIL highlighting accumulation of HTRA1 and its substrates

description: Additional file 2. Results of the proteomic analysis of CAA brain microvessel extracts.
DOI: 10.6084/m9.figshare.19029560
title: Additional file 3 of Proteomic profiling in cerebral amyloid angiopathy reveals an overlap with CADASIL highlighting accumulation of HTRA1 and its substrates

description: Additional file 3. Results of the proteomic analysis of AD brain microvessel extracts.
DOI: 10.6084/m9.figshare.19029560.v1
title: Additional file 3 of Proteomic profiling in cerebral amyloid angiopathy reveals an overlap with CADASIL highlighting accumulation of HTRA1 and its substrates

description: Additional file 3. Results of the proteomic analysis of AD brain microvessel extracts.