cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21952/1508397
title: Data From: Simulating bioclogging effects on dynamic riverbed permeability and infiltration, Water Resources Research

description: We collected a time series of Russian River infiltration rates to parameterize stochastic model development of infiltration conditions as a function of bioclogging. The time series of infiltration were collected from the Russian River Riverbank Filtration site located in Sonoma County California. Infiltration datasets are shown in units of m/day and were obtained using a seepage meter in 2012. To address the combined effects of bioclogging and disconnection on infiltration, we developed numerical representations of bioclogging processes based on these datasets using a within a one-dimensional, variably saturated flow model representing losing-connected and losing-disconnected rivers. All models and bioclogging formulations were used to create synthetic test cases for bioclogging.This research was supported by the Jane Lewis Fellowship from the University of California, Berkeley, the Sonoma County Water Agency (SCWA), the Roy G. Post Foundation Scholarship, the U.S. Department of Energy, Office of Science Graduate Student Research (SCGSR) Program, U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research under award DE-AC02-05CH11231, and the UFZ-Helmholtz Centre for Environmental Research, Leipzig, Germany.
DOI: 10.48370/ofd/vkjplg
title: Apodemus flavicollis - 45948, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1965-09-20, in: Białowieża National Park, Poland. Material type:
DOI: 10.21952/1508398
title: Data From: Influence of Hydrological Perturbations and Riverbed Sediment Characteristics on Hyporheic Zone Respiration of CO2 and N-2, Journal of Geophysical Research-Biogeosciences

description: This data package contains pumping data (.txt), parameter matrices, and R code (.R, .RData) to perform bootstrapping for parameter selection for the bioclogging model development. The pumping data were collected from the Russian River Riverbank Filtration site located in Sonoma County, California from 2010-2017 from three riverbank collection wells located alongside the study site. The pumping data is directly correlated with water table oscillations, so the code performs these correlations and simulates stochastic versions of water table oscillations. See Metadata Description.pdf for full details on dataset production. This dataset must be used with the R programming language. This dataset and R code is associated with the publication "Influence of Hydrological Perturbations and Riverbed Sediment Characteristics on Hyporheic Zone Respiration of CO2 and N-2"This research was supported by the Jane Lewis Fellowship from the University of California, Berkeley, the Sonoma County Water Agency (SCWA), the Roy G. Post Foundation Scholarship, the U.S. Department of Energy, Office of Science Graduate Student Research (SCGSR) Program, U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research under award DE-AC02-05CH11231, and the UFZ-Helmholtz Centre for Environmental Research, Leipzig, Germany.
DOI: 10.48370/ofd/jgsztu
title: Apodemus flavicollis - 166393, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1997-09-20, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/4wsjut
title: Apodemus flavicollis - 35605, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-06-05, in: Białowieża National Park, Poland. Material type:
DOI: 10.21952/wtr/1545781
title: Meteorological data from the Billy Bar site at the East River, Colorado

description: This dataset includes Quality Assessed and Quality Controlled (QA/QC) meteorological data from the Billy Bar field site in the East River Watershed, Colorado in order to inform watershed hydrobiogeochemical processes. The data includes 1-hour aligned time series of Solar Radiation, Wind Speed, Wind Direction, Air Temperature, Relative Humidity, Barometric Pressure, and Precipitation. For each parameter, the QA flags are given: 1 is for extreme (potential abnormal values), and 0 is for values in the expected range. The Rmarkdown document is a stand-alone file/notebook that preserves the text, code, and code results, as well as formatting contained in the original R script. The Data profiling report is a summary and graphical presentation of the data exploration process for data analysis and model building, so that users could focus on understanding data and extracting insights. The report provides a summary of each variable and does data profiling.
DOI: 10.48370/ofd/ldfrxl
title: Apodemus flavicollis - 151776, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1985-09-23, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/oc59di
title: Apodemus flavicollis - 166224, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1997-07-20, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/ngfdws
title: Apodemus flavicollis - 149749, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1984-05-23, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/t2cdqe
title: Apodemus flavicollis - 12632, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-08-15, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/wvvces
title: Apodemus flavicollis - 136112, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1980-07-01, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/gmgwji
title: Apodemus flavicollis - 166969, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1998-09-18, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/vgfiu8
title: Apodemus flavicollis - 81505, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-09-30, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/mf38z5
title: Apodemus flavicollis - 15416, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-10-29, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/mfhadw
title: Apodemus flavicollis - 138835, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1981-07-05, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/dsmxme
title: Apodemus flavicollis - 156310, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1987-10-28, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/e6emez
title: Apodemus flavicollis - 72399, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-03-27, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/btc9vc
title: Apodemus flavicollis - 23279, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1959-09-11, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/oxtxg2
title: Apodemus flavicollis - 26366, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1961-10-23, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/6oymny
title: Apodemus flavicollis - 146972, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1983-07-10, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/nxyxk1
title: Apodemus flavicollis - 166596, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1997-09-28, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/xtcgi3
title: Apodemus flavicollis - 159569, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1990-07-05, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/gr2ojq
title: Apodemus flavicollis - 149291, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1983-10-25, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/tidzvk
title: Apodemus flavicollis - 166887, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1998-07-09, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/odz0hc
title: Apodemus flavicollis - 1500, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1953-06-10, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/i7bltr
title: Apodemus flavicollis - 140128, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1981-09-22, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/fnzjb5
title: Apodemus flavicollis - 146864, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1983-07-03, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/g5grnq
title: Apodemus flavicollis - 165662, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1997-04-19, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/jowruz
title: Apodemus flavicollis - 149734, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1984-05-22, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/2eplbv
title: Apodemus flavicollis - 152129, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1985-10-11, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/ohcbca
title: Apodemus flavicollis - 9892, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-07-04, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/6ql3xj
title: Apodemus flavicollis - 124524, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1977-07-07, in: Białowieża National Park, Poland. Material type:
DOI: 10.17190/amf/1617698
title: AmeriFlux AmeriFlux US-Jo2 Jornada Experimental Range Mixed Shrubland

description: This is the AmeriFlux version of the carbon flux data for the site US-Jo2 Jornada Experimental Range Mixed Shrubland. Site Description - The study area is in a mixed shrub-dominated portion of the San Andres Mountain piedmont, along the southeastern boundary of the Jornada Experimental Range (JER) in southern New Mexico, USA. The JER was established in 1912 as a response of scientis and landowner to the shrub enchroachment and loss of grasses due to extended grazing during the late 1800s, fire and climate change. JER has been a NSF LTER site since 1981.The study site is a small watershed (4.67 ha) in an alluvial slope or bajada, with three major areas (north-, south- and west-facing hillslopes) with low to moderate slopes (~0–6°) with a mean slope of 2.6°, while the channel banks and propagating channel heads have higher slopes (~15–25°). The site is charactetized by a high bare soil coverage (~66%), ~28% of mixed shrubs coverage and a low coverage of grass (~4%) and weeds (~2%).
DOI: 10.48370/ofd/djljl6
title: Apodemus flavicollis - 163018, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1993-10-11, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/pfot6r
title: Apodemus flavicollis - 143898, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1982-10-14, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/tdrrb8
title: Apodemus flavicollis - 93699, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1970-09-16, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/circri
title: Apodemus flavicollis - 160382, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1990-09-25, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/kqhuqb
title: Apodemus flavicollis - 13955, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-09-12, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/hp5ltm
title: Apodemus flavicollis - 149072, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1983-10-12, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/j6rndu
title: Apodemus flavicollis - 14596, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-09-21, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/y6xkbo
title: Apodemus flavicollis - 28080, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1962-06-05, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/wjrgyr
title: Apodemus flavicollis - 42981, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1965-04-26, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/05j66y
title: Apodemus flavicollis - 36752, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-08-25, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/i6d8ka
title: Apodemus flavicollis - 110933, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1973-09-23, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/ttsuku
title: Apodemus flavicollis - 62684, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1967-05-08, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/0npkep
title: Apodemus flavicollis - 99720, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1971-10-16, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/wrq3l6
title: Apodemus flavicollis - 148589, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1983-09-18, in: Białowieża National Park, Poland. Material type:
DOI: 10.25982/59912.37/1635154
title: Viral Annotation Pipeline in KBase

description: This data analysis workflow demonstrates how to process a metagenome to identify viruses using VirSorter. Then, provides taxonomic classification using vConTACT2.
DOI: 10.48370/ofd/inb6x9
title: Apodemus flavicollis - 11344, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-07-22, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/widdyc
title: Apodemus flavicollis - 137601, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1980-09-21, in: Białowieża National Park, Poland. Material type:
DOI: 10.25982/54100.27/1635639
title: Draft Genome Sequence of Larkinella sp. Strain BK230, Isolated from Populus deltoides Roots

description: This narrative was used for a draft genome of a Larkinella species. This genus contains 9 identified species, of which only 5 have genome sequence data. This specimen was collected from a root sample of an eastern cottonwood (Populus deltoides) from a field site in Bellville, Georgia.
DOI: 10.48370/ofd/sottw8
title: Apodemus flavicollis - 137906, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1980-10-14, in: Białowieża National Park, Poland. Material type:
DOI: 10.25982/55377.22/1637507
title: Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides

description: Starkeya sp. strain ORNL1 is an alphaproteobacterium isolated from the rhizosphere of an Eastern cottonwood tree. Starkeya spp. are physiologically versatile, using a wide range of nutritional and energetic resources and serving important ecological roles in carbon and sulfur cycling. The 6.3-Mb chromosome of Starkeya sp. strain ORNL1 was completely sequenced and will help in understanding nutrient cycles.
DOI: 10.48370/ofd/oh79o2
title: Apodemus flavicollis - 34385, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1963-12-06, in: Białowieża National Park, Poland. Material type:
DOI: 10.25982/56021.26/1637512
title: Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere

description: Roseimicrobium sp. strain ORNL1 is a soil bacterium that belongs to the phylum Verrucomicrobia and was isolated from the rhizosphere of a forest Eastern cottonwood tree, Populus deltoides, in Tennessee. Its 7.9-Mb chromosome was completely sequenced using PacBio long reads and is predicted to encode 6,288 proteins and 76 RNAs.
DOI: 10.48370/ofd/anrqxb
title: Apodemus flavicollis - 158558, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1989-09-22, in: Białowieża National Park, Poland. Material type:
DOI: 10.25982/51077.6/1637903
title: Ecogenomics reveals community interactions in a long-term methanogenic bioreactor and a rapid switch to sulfate-reducing conditions

description: This Narrative is part of a collection used in a single publication. The paper took a metagnomic and metatranscriptomic approach to examine a bioreactor's response to the presence of sulfate, which reduces the production of methane, a valuable product, while producing hydrogen sulfide, a corrosive contaminant. This Narrative collection has been created to highlight the types of analyses done for this publication. They are as follows (in order): SJ1 Metagenomes: a metagenomic analysis of sample SJ1, the initial bioreactor. SJ1 Metatranscriptomes: QC-filtered raw RNA reads were aligned to individual MAGs and assembled into transcripts. Metagenome-discovered food webs in a long-term methanogenic bioreactor and rapid switch to sulfate reducing conditions (this Narrative): the public Narrative referenced in the paper, which contains several key MAGs.
DOI: 10.48370/ofd/utv000
title: Apodemus flavicollis - 151869, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1985-09-27, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/28ihef
title: Apodemus flavicollis - 42525, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1965-03-11, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/xwcunq
title: Apodemus flavicollis - 12506, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-08-12, in: Białowieża National Park, Poland. Material type: