cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25504/fairsharing.654822
title: FAIRsharing record for: PGDBj Ortholog Database
title: null

description: This FAIRsharing record describes:  The PGDBj Ortholog Database, created under the auspices of the Plant Genome Database Japan (PGDBj), contains information about orthologous genes in plants based on their corresponding amino acid sequence similarity. By placing PGDBj Ortholog Database as a 'hub' within a suite of resources and databases, the aim is to make reciprocal links between databases containing information about various organisms. Users can find orthologs in different subsets of organisms by searching the database using either amino acid information or keywords. The PGDBj 'amino acid sequence DB' contains 500,000 amino acid sequences from 20 plant species classified in Viridiplantae. The PGDBj Ortholog Database provides gene cluster information based on amino acid sequence similarity. Over 500,000 amino acid sequences of 20 Viridiplantae species were subjected to reciprocal BLAST searches and clustered. Sequences from plant genome DBs (e.g. TAIR10 and RAP-DB) were also included in the cluster with a direct link to the original DB. To provide outgroups in the Viridiplantae comparative analyses, ortholog data sets derived from Cyanobacteria and Deuterostomia are also being analyzed.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.d8fea5
title: FAIRsharing record for: Metabolonote
title: Metabolonote

description: This FAIRsharing record describes:  Metabolonote is a specialized database system that manages metadata for experimental data obtained through the study of Metabolomics. This system was developed with the aim of promoting the publication and utilization of Metabolomics data by simplifying the metadata recording process.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.qxsgvf
title: FAIRsharing record for: MirGeneDB.org
title: MirGeneDB

description: This FAIRsharing record describes:  MirGeneDB is a database of microRNA genes that have been validated and annotated as described in "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome".* The initial version contained 1,434 microRNA genes for human, mouse, chicken and zebrafish. Version 2.0 contains more than 10,000 genes from 45 organisms representing nearly every major metazoan group, and these microRNAs can be browsed, searched and downloaded.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.92473c
title: FAIRsharing record for: IUPAC Gold Book : Compendium of Chemical Terminology
title: IUPAC Gold Book

description: This FAIRsharing record describes:  The Compendium is popularly referred to as the "Gold Book" and is one of the series of IUPAC "Colour Books" on chemical nomenclature, terminology, symbols and units, and collects together terminology definitions from IUPAC recommendations already published in Pure and Applied Chemistry and in the other Colour Books.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.394bd6
title: FAIRsharing record for: NASA Ames PAH IR Spectroscopic Database
title: PAHdb

description: This FAIRsharing record describes:  Collaboration between the astronomers, laboratory chemists and theoretical chemists at the facilities of NASA's Ames Research Center resulted in the collection of PAH spectra known as The NASA Ames PAH IR Spectroscopic Database. Collaboration with different institutes, across several countries, helped mature the database and allowed for the construction of the web-portal with its data and tools. Initially intended for astronomers to explain the astronomical unidentified infrared bands and to investigate the "PAH hypothesis", now the spectral data and developed paradigms prove also valuable to, e.g., chemists, environmentalists, pharmacologists and nano-technologists.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.5ry74y
title: FAIRsharing record for: BridgeDb
title: BridgeDb

description: This FAIRsharing record describes:  BridgeDb is a framework and data repository for finding and mapping equivalent identifiers from various databases. BridgeDb provides a framework, live services, and identifier mapping files for genes, gene-variant, proteins, metabolites and interactions.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.b5c52c
title: FAIRsharing record for: European Union Observatory for Nanomaterials
title: EUON

description: This FAIRsharing record describes:  The European Union Observatory for Nanomaterials (EUON) provides information about existing nanomaterials on the EU market. Whether you are developing policies in the area, a consumer or representing industry or a green NGO, the information on the EUON offers interesting reading about the safety, innovation, research and uses of nanomaterials. The EUON is funded by the European Commission. It is hosted and maintained by the European Chemicals Agency (ECHA).
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.pp4alt
title: FAIRsharing record for: data.world
title: data.world

description: This FAIRsharing record describes:  data.world is a repository for open-access data sets. Their goal is to build the most meaningful, collaborative, and abundant data resource in the world.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.3c1056
title: FAIRsharing record for: Kinetic Database for Astrochemistry
title: KIDA

description: This FAIRsharing record describes:  KIDA (KInetic Database for Astrochemistry) is a database of kinetic data of interest for astrochemical (interstellar medium and planetary atmospheres) studies. KIDA is a project initiated by different communities in order to 1) improve the interaction between astrochemists and physico-chemists and 2) simplify the work of modeling the chemistry of astrophysical environments. Here astrophysical environments stand for the interstellar medium and planetary atmospheres. Both types of environments use similar chemical networks and the physico-chemists who work on the determination of reaction rate coefficients for both types of environment are the same.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.401958
title: FAIRsharing record for: NIST Atomic Spectra Database
title: ASD

description: This FAIRsharing record describes:  The Atomic Spectra Database (ASD) contains data for radiative transitions and energy levels in atoms and atomic ions. Data are included for observed transitions and energy levels of most of the known chemical elements. ASD contains data on spectral lines with wavelengths from about 20 pm (picometers) to 60 m (meters). For many lines, ASD includes radiative transition probabilities. The energy level data include the ground states and ionization energies for all spectra. For most spectra, wavelengths, transition-probabilities, relative intensities, and energy levels are integrated, so that all the available information for a given transition is incorporated under a single listing. For classified lines, in addition to the observed wavelength, ASD includes the Ritz wavelength, which is the wavelength derived from the energy levels.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.6e817a
title: FAIRsharing record for: Metabolomic Repository Bordeaux
title: MeRy-B

description: This FAIRsharing record describes:  MeRy-B is a plant metabolomics platform allowing the storage and visualisation of Nuclear Magnetic Resonance (NMR) metabolic profiles from plants.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.fc7b9f
title: FAIRsharing record for: Vertebrate Secretome Database
title: VerSeDa

description: This FAIRsharing record describes:  Vertebrate Secretome Database (VerSeDa) stores information about proteins that are predicted to be secreted through the classical and non-classical mechanisms, for the wide range of vertebrate species deposited at the NCBI, UCSC and ENSEMBL sites.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.2gmztk
title: FAIRsharing record for: ORTHOlogous MAmmalian Markers
title: OrthoMaM

description: This FAIRsharing record describes:  ORTHOlogous MAmmalian Markers database (OrthoMaM) describes the evolutionary dynamics of orthologous genes in mammalian genomes using a phylogenetic framework.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.b09e6b
title: FAIRsharing record for: R-loopDB
title: R-loopDB

description: This FAIRsharing record describes:  R-loop DB is a collection of R-loop forming sequences (RLFS) predicted computationally in the human genome based on quantitative model of RLFS (QmRLFS). The database additionally includes chromosome coordinates and annotation of many hundred thousand of newly predicted RLFSs computationally defined in the genomes of eight species. Genome-wide experimentally detected RNA-DNA hybrid data were also integrated into the R-loop DB.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.1de585
title: FAIRsharing record for: Gene Transcription Regulation Database
title: GTRD

description: This FAIRsharing record describes:  Gene Transcription Regulation Database (GTRD) is a database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for human and mouse.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.1ef98c
title: FAIRsharing record for: BCL-2 Database
title: BCL2DB

description: This FAIRsharing record describes:  BCL2DB is a database designed to integrate data on BCL-2 family members and BH3-only proteins.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.91f87d
title: FAIRsharing record for: HypoxiaDB
title: HypoxiaDB

description: This FAIRsharing record describes:  HypoxiaDB is a manually-curated non-redundant catalogue of human hypoxia-regulated proteins with a goal of collecting proteins whose expression patterns are altered in hypoxic conditions.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.9f337f
title: FAIRsharing record for: Bovine Genome Database
title: BGD

description: This FAIRsharing record describes:  The Bovine Genome Database project is developed to support the efforts of bovine genomics researchers by providing data mining, genome navigation and annotation tools for the bovine reference genome based on the hereford cow, L1 Dominette 01449.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.da5cb8
title: FAIRsharing record for: Selectome
title: Selectome

description: This FAIRsharing record describes:  Selectome is a database of positive selection, based on a branch-site likelihood test. Release 6 of Selectome includes all gene trees from Ensembl for Primates and Glires, as well as a large set of vertebrate gene trees.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.946cef
title: FAIRsharing record for: Selective Targets database
title: SelTarbase

description: This FAIRsharing record describes:  The Selective Targets database (SelTarbase ) is a curated database of public MNR mutation data in microsatellite unstable human tumors. A comprehensive database of all human coding, untranslated, non-coding RNA- and intronic MNRs (MNR_ensembl) is also included.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.l8sf5x
title: FAIRsharing record for: DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources
title: DECIPHER

description: This FAIRsharing record describes:  DECIPHER (Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources) is an international web-based platform that shares genetic and phenotypic data from rare disease patients and provides variant interpretation interfaces
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.vw2ybw
title: FAIRsharing record for: Genome3D
title: Genome3D

description: This FAIRsharing record describes:  Genome3D is a resource that provides structural annotation and 3D models of genomes of model organisms such as human, yeast and E.coli. The database can be used to predict protein structures that have not yet been identified. Genome3D uses structural classification data from several UK-based resources including CATH and SCOP.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.8f0be4
title: FAIRsharing record for: MitoProteome
title: MitoProteome

description: This FAIRsharing record describes:  MitoProteome is a mitochondrial protein sequence database and annotation system. The initial release contains 847 human mitochondrial protein sequences, derived from public sequence databases and mass spectrometric analysis of highly purified human heart mitochondria.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.90265b
title: FAIRsharing record for: Phospho.ELM
title: Phospho.ELM

description: This FAIRsharing record describes:  Phospho.ELM is a manually curated database of eukaryotic phosphorylation sites. The resource includes data collected from published literature as well as high-throughput data sets.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.an3lmf
title: FAIRsharing record for: InParanoidDB
title: null

description: This FAIRsharing record describes:  InParanoiDB is a database containing groups of orthologs and inparalogs for 640 species. The InParanoid database provides a user interface to orthologs inferred by the InParanoid algorithm. InParanoid release 8 is based on the 66 reference proteomes that the 'Quest for Orthologs' community has agreed on using, plus 207 additional proteomes from the UniProt complete proteomes--in total 273 species.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.fa9ccb
title: FAIRsharing record for: Satellog
title: Satellog

description: This FAIRsharing record describes:  Satellog is a database that catalogs all pure 1-16 repeat unit satellite repeats in the human genome along with supplementary data. Satellog analyzes each pure repeat in UniGene clusters for evidence of repeat polymorphism.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.84c1a7
title: FAIRsharing record for: LNCipedia
title: LNCipedia

description: This FAIRsharing record describes:  LNCipedia is a database for human long non-coding RNA (lncRNA) transcripts and genes. In addition to basic transcript information and gene structure, several statistics are determined for each entry in the database, such as secondary structure information, protein coding potential and microRNA binding sites. Available literature on specific lncRNAs is linked, and users or authors can submit articles through a web interface. LNCipedia is publicly available and allows users to query and download lncRNA sequences and structures based on different search criteria. Please note that, while searching and download of this repository is available, the last release was in 2018.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.