cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7470217
title: Noncanonical electromechanical coupling paths in cardiac hERG potassium channel (semi-binary contact maps)

description: Matrices of the semi-binary contact maps of the following open and closed systems: WT, A527L, A614G, L524R, L529H, L532H, T425L, T618L, W563L. The residue numbering is not the official one because the first residues (397) of hERG (PAS domain) were not included in our simulations so that each subunit comprizes 466 residues. Moreover, the four subunits were numbered consecutively. The official numbering of a residue can be easily recovered. The general rule is: official residue - 397 = our residue For example, the official T425 corresponds to T28 in the first subunit (425-397), T494 in the second subunit (425-397+466), T960 in the third subunit (425-397+466+466), and T1426 in the fourth subunit (425-397+466+466+466).
description: {"references": ["https://doi.org/10.1038/s41467-023-36730-7"]}
DOI: 10.5281/zenodo.7470218
title: Noncanonical electromechanical coupling paths in cardiac hERG potassium channel (semi-binary contact maps)

description: Matrices of the semi-binary contact maps of the following open and closed systems: WT, A527L, A614G, L524R, L529H, L532H, T425L, T618L, W563L. The residue numbering is not the official one because the first residues (397) of hERG (PAS domain) were not included in our simulations so that each subunit comprizes 466 residues. Moreover, the four subunits were numbered consecutively. The official numbering of a residue can be easily recovered. The general rule is: official residue - 397 = our residue For example, the official T425 corresponds to T28 in the first subunit (425-397), T494 in the second subunit (425-397+466), T960 in the third subunit (425-397+466+466), and T1426 in the fourth subunit (425-397+466+466+466).
description: {"references": ["https://doi.org/10.1038/s41467-023-36730-7"]}
DOI: 10.57745/gv0o2i
title: HRMS_iso-Delta&iso-Epsilon-Viniferin.pdf

description: :unav
DOI: 10.57745/ilwntb
title: FlashPurification_NormalPhase.pdf

description: Chromatogram and collect details of normal phase purification of extracted optimized reaction.
DOI: 10.57745/pjeel8
title: FlashPurification_ReversePhase.pdf

description: Data recorded during reverse flash purification over C18 column
DOI: 10.57745/x1fnci
title: DoE_Glycostil_Labruscol.zip

description: Data related to design of experiments performed to increase labruscol yield
DOI: 10.57745/y6rxum
title: Molecular_Modelling.zip

description: Data related to molecular modelling of cis and trans-E-Labruscol
DOI: 10.57745/wf7yod
title: NMR.zip

description: NMR data of new identified compounds
DOI: 10.57745/fxj57c
title: README.pdf

description: :unav
DOI: 10.57745/bnnpbf
title: Laccase_Activity_data.tab

description: Raw and treated data from microplate for laccase activity determination
DOI: 10.15129/4b5de6bd-4b62-4efa-9fc7-4676d4e03a42
title: Data for: "Diabetes is accompanied by changes in the levels of proteins involved in endosomal GLUT4 trafficking in obese human skeletal muscle"

description: Muscle study blots. Folder contains all original immunoblots of skeletal muscle fractions from obese and obese diabetic individuals. Additional supplementary information and data is available in the linked publication
DOI: 10.6084/m9.figshare.21026806.v1
title: 7-meter myths

description: All 7-meter shots in Icelandic elite division (male and female from 2018-2022). Including various covariates and whether the shooter was fouled and whether there was a change of shooters following a miss previously in the same game.
DOI: 10.6084/m9.figshare.21026806.v2
title: 7-meter myths

description: All 7-meter shots in Icelandic elite division (male and female from 2018-2022). Including various covariates and whether the shooter was fouled and whether there was a change of shooters following a miss previously in the same game.
DOI: 10.15129/8a14e947-b1f1-46ed-8207-65d91259a4d4
title: Data for: "GLUT4 translocation and dispersal operate in multiple cell types and are negatively correlated with cell size in adipocytes.”

description: Dataset for all results in Koester et al presented as a series of Prism files.
DOI: 10.6084/m9.figshare.16860025
title: Data for: Plant species composition as primary determinant of terrestrial arthropod assemblages

description: This dataset contains all the data required to reproduce the analyses performed for the manuscript entitled "Plant species composition as primary determinant of terrestrial arthropod assemblages".<br>
DOI: 10.5281/zenodo.7691965
title: Data from: Functionally analogous body- and animacy-responsive areas in the dog (Canis familiaris) and human occipito-temporal lobe

description: Comparing the neural correlates of socio-cognitive skills across species provides insights into the evolution of the social brain and has revealed face- and body-sensitive regions in the primate temporal lobe. Although from a different lineage, dogs share convergent visuo-cognitive skills with humans and a temporal lobe which evolved independently in carnivores. We investigated the neural correlates of face and body perception in dogs (<em>N </em>= 15) and humans (<em>N</em> = 40) using functional MRI. Combining univariate and multivariate analysis approaches, we found functionally analogous occipito-temporal regions involved in the perception of animate entities and bodies in both species and face-sensitive regions in humans. Though unpredicted, we also observed neural representations of faces compared to inanimate objects, and dog compared to human bodies in dog olfactory regions. These findings shed light on the evolutionary foundations of human and dog social cognition and the predominant role of the temporal lobe. This data set contains: raw functional neuroimaging data of <em>N</em> = 15 dogs structural scans of the same dogs incl. brain masks & skull-stripped versions files containing the condition names, onsets and durations for each dog and task run files containing the motion regressors incl. motion scrubbing for each dog and task run Data of the comparative human neuroimaging sample will be made available by the first author upon reasonable request. Please also visit our Open Science Framework project site for detailed sample descriptives and group-level imaging data of both species (https://osf.io/kzcs2/).
description: This project was supported by the Austrian Science Fund (FWF): W1262-B29 and by the Vienna Science and Technology Fund (WWTF), the City of Vienna and ithuba Capital AG [10.47379/CS18012], and the Messerli Foundation (Sörenberg, Switzerland). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
DOI: 10.6084/m9.figshare.22210618
title: Supplementary Material for: Triglycerides and Renal Outcomes according to Albuminuria and in Consideration of other Metabolic Syndrome Components in Diabetic US Veterans

description: Objective: Hypertriglyceridemia, a component of the metabolic syndrome, is a known independent predictor of albuminuria and chronic kidney disease (CKD) in the general population. Previous studies have shown that the relationship of triglycerides with outcomes changes across stages of CKD. Our objective is to examine the association of triglycerides independent of other metabolic syndrome components with renal outcomes in diabetic patients with or without CKD. Research Design and Methods: This retrospective cohort study included diabetic US veteran patients with valid data on triglycerides (TG), estimated glomerular filtration rate (eGFR) and albuminuria (UACR), between fiscal years 2004 to 2006. Using Cox models adjusted for clinical characteristics and laboratory markers, we evaluated the relationship of TG with incident albuminuria (stratified by eGFR category) and based on eGFR (stratified by baseline albuminuria categories). To evaluate the relationship of TG with time to end-stage renal disease (ESRD), we stratified models by baseline CKD stage (eGFR category) and baseline albuminuria stage ascertained at time of TG measurement. Results: In a cohort of 138,675 diabetic veterans, the mean±SD age was 65±11 years old, and included 3% females and 14% African Americans. The cohort also included 28% of patients with non-dialysis dependent CKD (eGFR&lt;60 mL/min/173m2), as well as 28% of patients with albuminuria (≥30 mg/g). The median[IQR] of serum TG was 148[100, 222] mg/dL. We observed a slight positive linear association between TG and incident CKD after adjustment for case-mix and laboratory variables among non-albuminuric and microalbuminuric patients. High TG levels were associated with ESRD in CKD 3A non-albuminuric patients and in CKD 3A and 4/5 in patients with microalbuminuria. Conclusions: In a large cohort, we have shown that elevated TG are associated with all kidney outcomes tested independently of other metabolic syndrome components in diabetic patients with normal eGFR and normal albumin excretion rate, but the association is weaker in some groups of diabetic patients with pre-existing renal complications.
DOI: 10.6084/m9.figshare.22210618.v1
title: Supplementary Material for: Triglycerides and Renal Outcomes according to Albuminuria and in Consideration of other Metabolic Syndrome Components in Diabetic US Veterans

description: Objective: Hypertriglyceridemia, a component of the metabolic syndrome, is a known independent predictor of albuminuria and chronic kidney disease (CKD) in the general population. Previous studies have shown that the relationship of triglycerides with outcomes changes across stages of CKD. Our objective is to examine the association of triglycerides independent of other metabolic syndrome components with renal outcomes in diabetic patients with or without CKD. Research Design and Methods: This retrospective cohort study included diabetic US veteran patients with valid data on triglycerides (TG), estimated glomerular filtration rate (eGFR) and albuminuria (UACR), between fiscal years 2004 to 2006. Using Cox models adjusted for clinical characteristics and laboratory markers, we evaluated the relationship of TG with incident albuminuria (stratified by eGFR category) and based on eGFR (stratified by baseline albuminuria categories). To evaluate the relationship of TG with time to end-stage renal disease (ESRD), we stratified models by baseline CKD stage (eGFR category) and baseline albuminuria stage ascertained at time of TG measurement. Results: In a cohort of 138,675 diabetic veterans, the mean±SD age was 65±11 years old, and included 3% females and 14% African Americans. The cohort also included 28% of patients with non-dialysis dependent CKD (eGFR&lt;60 mL/min/173m2), as well as 28% of patients with albuminuria (≥30 mg/g). The median[IQR] of serum TG was 148[100, 222] mg/dL. We observed a slight positive linear association between TG and incident CKD after adjustment for case-mix and laboratory variables among non-albuminuric and microalbuminuric patients. High TG levels were associated with ESRD in CKD 3A non-albuminuric patients and in CKD 3A and 4/5 in patients with microalbuminuria. Conclusions: In a large cohort, we have shown that elevated TG are associated with all kidney outcomes tested independently of other metabolic syndrome components in diabetic patients with normal eGFR and normal albumin excretion rate, but the association is weaker in some groups of diabetic patients with pre-existing renal complications.
DOI: 10.5281/zenodo.7695316
title: What is the Best Algorithm for MDP Model Checking? Replication Package

description: This artefact allows to review and replicate the experiments from the paper <strong>What is the Best Algorithm for MDP Model Checking?</strong>.<br> The package contains all original logfiles and the scripts that extract the relevant data from those logs to generate the plots as in the paper.<br> Furthermore, the artefact contains the exercised version of the model checking tool `Storm` with its dependencies and convenient installation scripts as well as all benchmark instances.<br> The user can thus replicate all experiments from the paper.<br> An appropriate subset of the experiments is given to allow a review in a timely manner. In addition, single experiments can be handpicked for replication. <em>This is a mild adaptation of the artefact for the paper "A Practitioner's Guide to MDP Model Checking Algorithms by Hartmanns et al. (TACAS'23)".</em>
description: This artefact was tested using the virtual machine (VM) for the TACAS'23 artefact evaluation, available at https://doi.org/10.5281/zenodo.7113222. The VM is based on Ubuntu 22.04. Use the root password `tacas23`. Other Linux and MacOS systems should work as well.
DOI: 10.5281/zenodo.7695315
title: What is the Best Algorithm for MDP Model Checking? Replication Package

description: This artefact allows to review and replicate the experiments from the paper <strong>What is the Best Algorithm for MDP Model Checking?</strong>.<br> The package contains all original logfiles and the scripts that extract the relevant data from those logs to generate the plots as in the paper.<br> Furthermore, the artefact contains the exercised version of the model checking tool `Storm` with its dependencies and convenient installation scripts as well as all benchmark instances.<br> The user can thus replicate all experiments from the paper.<br> An appropriate subset of the experiments is given to allow a review in a timely manner. In addition, single experiments can be handpicked for replication. <em>This is a mild adaptation of the artefact for the paper "A Practitioner's Guide to MDP Model Checking Algorithms by Hartmanns et al. (TACAS'23)".</em>
description: This artefact was tested using the virtual machine (VM) for the TACAS'23 artefact evaluation, available at https://doi.org/10.5281/zenodo.7113222. The VM is based on Ubuntu 22.04. Use the root password `tacas23`. Other Linux and MacOS systems should work as well.
DOI: 10.15129/e0c00ca5-4f79-4797-87d3-c590595c8da1
title: dSTORM imaging data files for 'EFR3 and phosphatidylinositol 4-kinase IIIα regulate insulin-stimulated glucose transport and GLUT4 dispersal in 3T3-L1 adipocytes'

description: Insulin stimulates glucose transport in muscle and adipocytes. This is achieved by regulated delivery of intracellular glucose transporter (GLUT4)-containing vesicles to the plasma membrane where they dock and fuse, resulting in increased cell surface GLUT4 levels. Recent work identified a potential further regulatory step, in which insulin increases the dispersal of GLUT4 in the plasma membrane away from the sites of vesicle fusion. EFR3 is a scaffold protein that facilitates localisation of phosphatidylinositol 4-kinase type IIIalpha to the cell surface. Using direct stochastic reconstruction microscopy, dSTORM, we show that EFR3 knockdown impairs insulin stimulated GLUT4 dispersal in the plasma membrane. Enclosed here are the dSTORM datasets and associated analyses for all experiments, presented as a single folder for each experiment. Please note the 'read me' and 'file names' are described. Please also refer to 'GLUT4 Dispersal data set 2017-2021' for additional files and analyses.
DOI: 10.15468/5ank0g
title: Sistema Museale di Ateneo, Università di Pisa - Herbarium PI

description: This dataset contains the holdings of the herbarium Horti Botanici Pisani of the Università di Pisa (PI)
DOI: 10.5281/zenodo.7534333
title: Data for: Real time g(2) monitoring with 100 kHz sampling rate

description: Data for the publication C. Lüders, J. Thewes, and M. Assmann, Real time g<sup>(2)</sup> monitoring with 100 kHz sampling rate, Opt. Express <strong>26</strong>, 24854-24863 (2018). We introduce a technique to determine photon correlations of optical light fields in real time. The method is based on ultrafast phase-randomized homodyne detection and allows us to follow the temporal evolution of the second-order correlation function <em>g</em><sup>(2)</sup>(0) of a light field. We demonstrate the capabilities of our approach by applying it to a laser diode operated in the threshold region. In particular, we are able to monitor the emission dynamics of the diode switching back and forth between lasing and spontaneous emission with a <em>g</em><sup>(2)</sup>(0)-sampling rate of 100 kHz. Funded by German Science Foundation (DFG) (AS 459/1-2).
DOI: 10.5281/zenodo.7534332
title: Data for: Real time g(2) monitoring with 100 kHz sampling rate

description: Data for the publication C. Lüders, J. Thewes, and M. Assmann, Real time g<sup>(2)</sup> monitoring with 100 kHz sampling rate, Opt. Express <strong>26</strong>, 24854-24863 (2018). We introduce a technique to determine photon correlations of optical light fields in real time. The method is based on ultrafast phase-randomized homodyne detection and allows us to follow the temporal evolution of the second-order correlation function <em>g</em><sup>(2)</sup>(0) of a light field. We demonstrate the capabilities of our approach by applying it to a laser diode operated in the threshold region. In particular, we are able to monitor the emission dynamics of the diode switching back and forth between lasing and spontaneous emission with a <em>g</em><sup>(2)</sup>(0)-sampling rate of 100 kHz. Funded by German Science Foundation (DFG) (AS 459/1-2).
DOI: 10.25345/c5hh6cg4c
title: MassIVE MSV000091401 - Molecular control of endurance training adaptation in mouse skeletal muscle
title: Skeletal muscle has an enormous plastic potential to adapt to various external and internal perturbations. While morphological changes in endurance trained muscles are well described, the molecular underpinnings of training adaptation are poorly understood. We aimed at defining the molecular signature of a trained muscle and unraveling the training status-dependent responses to an acute bout of exercise. Our results reveal that even though at baseline, the transcriptomes of trained and untrained muscles are very similar, training status substantially affects the transcriptional response to an acute challenge, both quantitatively and qualitatively, in part mediated by epigenetic modifications. Second, proteomic changes were elicited by different transcriptional modalities. Finally, an unexpected resilience to enhance endurance performance even in the absence of key regulatory factors was observed, suggesting a strong evolutionary pressure on enabling muscle plasticity even in unfavorable contexts. Together, these results provide a molecular framework that defines muscle plasticity in training.
DOI: 10.21227/34ff-v973
title: Precise MRI Image Classification Using improvised ResNet 50 Framework for the Automated Detection of Anterior Cruciate Ligament Injury

description: This folder consists of codes, dataset, and models.
DOI: 10.5519/0018993
title: PREDICTS: site-level summary biodiversity and pressure data

description: This dataset contains site-level summaries of more than 1.6 million samples from 78 countries representing over 28,000 species, collated from existing spatial comparisons of local-scale biodiversity exposed to different intensities and types of anthropogenic pressures, from terrestrial sites around the world. The underlying database is being assembled as part of the [PREDICTS project](https://www.nhm.ac.uk/our-science/our-work/biodiversity/predicts.html) - Projecting Responses of Ecological Diversity In Changing Terrestrial Systems. A complete description of the data is given in [https://doi.org/10.1002/ece3.1303](https://doi.org/10.1002/ece3.1303).
DOI: 10.5281/zenodo.7694367
title: T-cell activity - Imaging flow cytometry experiment data

description: Raw image data from the imaging flow cytometry experiments for correlating receptor localization and cytokine production.
DOI: 10.5281/zenodo.7694366
title: T-cell activity - Imaging flow cytometry experiment data

description: Raw image data from the imaging flow cytometry experiments for correlating receptor localization and cytokine production.
DOI: 10.5281/zenodo.7438766
title: Data to our paper "Polymeric carbon nitride-based photocathodes for visible light-driven selective reduction of oxygen to hydrogen peroxide"

description: Data to our paper "Polymeric carbon nitride-based photocathodes for visible light-driven selective reduction of oxygen to hydrogen peroxide"
DOI: 10.5281/zenodo.7438767
title: Data to our paper "Polymeric carbon nitride-based photocathodes for visible light-driven selective reduction of oxygen to hydrogen peroxide"

description: Data to our paper "Polymeric carbon nitride-based photocathodes for visible light-driven selective reduction of oxygen to hydrogen peroxide"
DOI: 10.5281/zenodo.7695429
title: Data to our paper "Polymeric carbon nitride-based photocathodes for visible light-driven selective reduction of oxygen to hydrogen peroxide"

description: Data to our paper "Polymeric carbon nitride-based photocathodes for visible light-driven selective reduction of oxygen to hydrogen peroxide"
DOI: 10.48579/pro/njmwih
title: Valeurs de concentration en éléments chimiques dans des mousses collectées en France métropolitaine en 2011

description: Dépourvues de système vasculaire développé et de véritables racines, les mousses sont directement exposées aux variations du milieu. Elles répondent rapidement aux perturbations environnementales et fournissent ainsi des informations utiles sur la qualité des milieux aquatiques et terrestres ainsi que sur les changements globaux. Au travers de très nombreuses études, les mousses terrestres sont apparues comme des bioaccumulateurs efficaces du dépôt atmosphérique particulaire et soluble. La concentration d’un élément dans une mousse permet d'estimer le niveau d’exposition du brin vis-à-vis des contaminants atmosphériques. Cette technique de biosurveillance est une méthode relative qui permet de classer les sites de collecte les uns par rapport aux autres en fonction de la valeur de concentration mesurée dans l’échantillon de mousses. Le dispositif BRAMM (Biosurveillance des Retombées Atmosphériques Métalliques par les Mousses) permet de cartographier et de modéliser les concentrations en contaminants métalliques et azoté dans des mousses forestières sur l’ensemble du territoire métropolitain. Des campagnes quinquennales sont réalisées depuis 1996 (1996, 2000, 2006, 2011, 2016 et 2021) et portent sur environ 500 sites de collectes répartis sur l’ensemble du territoire. Ces sites sont localisés en milieu rural, loin des sources locales de pollution, et forestier, sous couvert arboré. Le dispositif BRAMM est la participation française au programme European moss survey piloté par le PIC-Végétation dans le cadre de la Convention de Genève sur la Pollution Atmosphérique Transfrontière à Longue Distance (UNECE-LRATP).
DOI: 10.5281/zenodo.7695374
title: Open data for publication: Advanced catalyst for CO2 photo-reduction: From controllable product selectivity by architecture engineering to improving charge transfer using stabilized Au clusters

description: Original data for publication: Advanced catalyst for CO2 photo-reduction: From controllable product selectivity by architecture engineering to improving charge transfer using stabilized Au clusters, published in Small, 2023. The dataset is organized according to the Figures in the manuscript.
DOI: 10.5281/zenodo.7695373
title: Open data for publication: Advanced catalyst for CO2 photo-reduction: From controllable product selectivity by architecture engineering to improving charge transfer using stabilized Au clusters

description: Original data for publication: Advanced catalyst for CO2 photo-reduction: From controllable product selectivity by architecture engineering to improving charge transfer using stabilized Au clusters, published in Small, 2023. The dataset is organized according to the Figures in the manuscript.
DOI: 10.57745/hkfne2
title: DOMLAC-Dataset.tab

description: :unav
DOI: 10.57745/vr7ama
title: DOMLAC-Dataset.tab

description: :unav
DOI: 10.5281/zenodo.7695433
title: Revisiones sistemáticas ByD

description: Fichero de datos de revisiones sistemáticas publicadas en revistas españolas de Biblioteconomía y Documentación