cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15472/mlqqli
title: Herpetofauna asociada a un área afectada por incendio forestal en la zona baja del río Atrato, Unguía, Chocó - 2019

description: Los incendios forestales pueden ser fenómenos naturales o el resultado de acciones antrópicas, los cuales tienen efectos sobre la diversidad biológica, convirtiéndose en un problema para la conservación de la biodiversidad y aspectos económicos, sociales de los pueblos, ya que afecta sus actividades productivas y su seguridad alimentaria. En el componente fauna, los incendios producen importantes alteraciones en su composición, estructura y función, pudiendo llevar a la desaparición de especies, la disminución de la biodiversidad, o la pérdida total o parcial. Desde el punto ecológico, las alteraciones son cuantiosas, por los desequilibrios que se presentaran post incendio: se cambia la composición química del suelo y consigo, la microbiota sufre considerables cambios en su capacidad reproductiva, se disminuye el porcentaje de germinación de las esporas de diversas especies de hongos presentes en el suelo, así mismo aumentan los procesos erosivos por la pérdida de la cubierta vegetal, que a su vez repercute sobre otros procesos ecológicos vitales como la polinización y dispersión de semillas, que son claves en el proceso de resiliencia de los ambientes alterados. Para el año 2014, se afectó el hábitat de cerca de unas 300 especies de vertebrados terrestres y comunidades biológicas de interés especial (arracachales, cativales y panganales), que prestan servicios ambientales importantes para los ecosistemas, como la conservación de especies de fauna y flora terrestre y acuática. Con el objetivo de mirar el proceso de resiliencia de la fauna en estas áreas, se pretendió monitorear la herpetofauna presente en un área restauración en áreas afectada por incendios forestales en el municipio de Unguía.
DOI: 10.5281/zenodo.4302810
title: The dataset of figures for "The GPU version of LICOM3 under HIP framework and its large-scale application" (updated)

description: A high-resolution (1/20°) global ocean general circulation model with Graphics processing units (GPUs) code implementations is developed based on the LASG/IAP Climate system Ocean Model version 3 (LICOM3) under Heterogeneous-compute Interface for Portability (HIP) framework. The dynamic core and physics package of LICOM3 are both ported to the GPU, and 3-dimensional parallelization is applied. The HIP version of the LICOM3 (LICOM3-HIP) is 42 times faster than what the same number of CPU cores dose, when 384 AMD GPUs and CPU cores are used. The LICOM3-HIP has excellent scalability; it can still obtain speedup of more than four on 9216 GPUs comparing to 384 GPUs. In this phase, we successfully performed a test of 1/20° LICOM3-HIP using 6550 nodes and 26200 GPUs, and at the grand scale, the model’s time to solution can still obtain an increasing, about 2.72 simulated years per day (SYPD). The high performance was due to putting almost all of computation processes inside GPUs, and thus greatly reduces the time cost of data transfer between CPUs and GPUs. At the same time, a 14-year spin-up integration following the phase 2 of Ocean Model Intercomparison Project (OMIP-2) protocol of surface forcing has been conducted, and the preliminary results have been evaluated. We found that the model results have little differences from the CPU version. Further comparison with observations and lower-resolution LICOM3 results suggests that the 1/20° LICOM3-HIP can not only reproduce the observations, but also produce much smaller scale activities, such as submesoscale eddies and frontal scales structures.
DOI: 10.6084/m9.figshare.12580757
title: Lifecycle of the invasive omnivore, Forficula auricularia, in Australian grain growing environments

description: Data and R code associated with manuscript Binns et al. (2020) "Lifecycle of the invasive omnivore, <i>Forficula auricularia</i>, in Australian grain growing environments".<br>Published in Pest Management ScienceDOI: 10.1002/ps.6206
DOI: 10.6084/m9.figshare.12580757.v1
title: Lifecycle of the invasive omnivore, Forficula auricularia, in Australian grain growing environments

description: Data and R code associated with manuscript Binns et al. (2020) "Lifecycle of the invasive omnivore, <i>Forficula auricularia</i>, in Australian grain growing environments".<br>Published in Pest Management ScienceDOI: 10.1002/ps.6206
DOI: 10.21227/m1mh-qx14
title: Discriminative Concept Learning Network: Sample Source Code and Supplement (Project Archive)

description: Summary: The archive of DCLN project (https://sourceforge.net/projects/dcln/) is provided.Code & Script: Written in C/C++, running Shell scripts on Linux system. Mature package release v2.0 available for download. Check './dcln.sh' for usage info.Document: Details of hyperparameters tuning, data preprocessing and code compiling are given.Data: Four nonlinear simulation datasets are provided (Fig. 2 of the main paper). Each study has ~2000 training samples and ~2000 test samples.
DOI: 10.26182/vge3-fe21
title: Gas exchange patterns for two stored grain pests, Tribolium castaneum and Plodia interpunctella
DOI: 10.6084/m9.figshare.11894559
title: Egg size-dependent fertilization mediates sex allocation in a sexually dimorphic haplodiploid thrips species

description: The data set describes egg size mediated sex allocation and mating regulated reproductive investment in both laboratory and field-collected populations of Kelly’s citrus thrips, <i>Pezothrips kellyanus </i>(Thysanoptera: Thripidae). It demonstrates the size of eggs produced by three different mother types according to their mating status and their offspring sex ratio: virgins [= V], mated females producing only male offspring [= M(♂)] and mated females, producing female and male offspring [= M(♀+♂)]. The offspring is also categorized in four types based upon their sex and mother type: sons of M(♀+♂) [= SV], sons of M(♂) [= SM(♂)], sons of M(♀+♂) [= SM(♀+♂)] and daughters of M(♀+♂) [= DM(♀+♂)]. According to the data, <i>P. kellyanus</i> exhibits an egg size-dependent fertilization, and shows a previously unknown mechanism underlying sex allocation in haplodiploid insects for the first time. Moreover, the data demonstrates larger minimum, maximum and average egg volume (but similar clutch size) in M(♀+♂) compared to the other mother types and, consequently, a higher ERI in this mother type, suggesting that this is triggered by mating. However, this higher ERI occurs at the expense of smaller life-time fecundity due to a shorter reproductive life-span in M(♀+♂). Finally, the data reveals a positive correlation between egg size and offspring fitness parameters such as survivorship, larva and adult size. This indicates that the egg size variation is due to differential maternal nutrient and energy allocation.
DOI: 10.6084/m9.figshare.11894559.v1
title: Egg size-dependent fertilization mediates sex allocation in a sexually dimorphic haplodiploid thrips species

description: The data set describes egg size mediated sex allocation and mating regulated reproductive investment in both laboratory and field-collected populations of Kelly’s citrus thrips, <i>Pezothrips kellyanus </i>(Thysanoptera: Thripidae). It demonstrates the size of eggs produced by three different mother types according to their mating status and their offspring sex ratio: virgins [= V], mated females producing only male offspring [= M(♂)] and mated females, producing female and male offspring [= M(♀+♂)]. The offspring is also categorized in four types based upon their sex and mother type: sons of M(♀+♂) [= SV], sons of M(♂) [= SM(♂)], sons of M(♀+♂) [= SM(♀+♂)] and daughters of M(♀+♂) [= DM(♀+♂)]. According to the data, <i>P. kellyanus</i> exhibits an egg size-dependent fertilization, and shows a previously unknown mechanism underlying sex allocation in haplodiploid insects for the first time. Moreover, the data demonstrates larger minimum, maximum and average egg volume (but similar clutch size) in M(♀+♂) compared to the other mother types and, consequently, a higher ERI in this mother type, suggesting that this is triggered by mating. However, this higher ERI occurs at the expense of smaller life-time fecundity due to a shorter reproductive life-span in M(♀+♂). Finally, the data reveals a positive correlation between egg size and offspring fitness parameters such as survivorship, larva and adult size. This indicates that the egg size variation is due to differential maternal nutrient and energy allocation.
DOI: 10.5281/zenodo.4304273
title: Professional burnout of medical professionals according to specialties and generations

description: The problem of professional burnout of medical workers around the world is acute and is directly related to the quality of medical care. The aim of the study is to determine the prevalence, severity and risk factors of professional burnout syndrome of medical workers in Tomsk region according to generations to develop preventive measures. Materials and methods. As part of the study, a questionnaire was developed that consisted of 41 questions aimed at assessing the life factors of medical professionals. Also it included an abbreviated version of the MBI questionnaire (Maslach Burnout Inventory) in the Russian-language adaptation by N. E. Vodopyanova and E. S. Starchenkova (2005). The study population was divided into age groups based on the generational theory. Participation in the survey was anonymous and voluntary. Expected results of the study. The study will determine the factors of development professional burnout syndrome of medical workers in Tomsk region according to generations and identify possible correlations with socio-economic status, as well as suggest corrective measures to modernize the personnel policy aimed at preventing this syndrome.
DOI: 10.5281/zenodo.4304272
title: Professional burnout of medical professionals according to specialties and generations

description: The problem of professional burnout of medical workers around the world is acute and is directly related to the quality of medical care. The aim of the study is to determine the prevalence, severity and risk factors of professional burnout syndrome of medical workers in Tomsk region according to generations to develop preventive measures. Materials and methods. As part of the study, a questionnaire was developed that consisted of 41 questions aimed at assessing the life factors of medical professionals. Also it included an abbreviated version of the MBI questionnaire (Maslach Burnout Inventory) in the Russian-language adaptation by N. E. Vodopyanova and E. S. Starchenkova (2005). The study population was divided into age groups based on the generational theory. Participation in the survey was anonymous and voluntary. Expected results of the study. The study will determine the factors of development professional burnout syndrome of medical workers in Tomsk region according to generations and identify possible correlations with socio-economic status, as well as suggest corrective measures to modernize the personnel policy aimed at preventing this syndrome.
DOI: 10.6084/m9.figshare.12818807
title: Air qaulity in recent years.zip

description: Surface air quality in 74 major cities of China in recent years.
DOI: 10.17638/datacat.liverpool.ac.uk/1190
title: Quality and Outcomes Framework Indicators Stroke/transient ischemic attack prevalence (QOF_4_10)
DOI: 10.6084/m9.figshare.13331321.v1
title: Weather data

description: weather data in china
DOI: 10.6084/m9.figshare.13331321
title: Weather data

description: weather data in china
DOI: 10.5281/zenodo.4305014
title: Effective broadband optical parameters for snow albedo simulation in climate models

description: This is a supplementary file for a submitted paper"Physics-based effective broadband optical parameters for snow albedo simulation in climate models". The authors derived a set of snow optical properties that effective in broadband snow radiative transfer simulation. These parameters are physically-based.
DOI: 10.17638/datacat.liverpool.ac.uk/1195
title: Prescribing indicators - Anti-coagulants (P_1_11)
DOI: 10.17638/datacat.liverpool.ac.uk/1197
title: Quality and Outcomes Framework Indicators: Coronary heart disease prevalence (QOF_4_02)
DOI: 10.6084/m9.figshare.13218755
title: FAMEF

description: Description: FAMEF includes 5 CSV files totally. They are extended_description.csv, extended_installation.csv, extended_invocation.csv, extended_citation.csv, and function.csv. All of them are used to train and test models. We used them to update four classifiers which are description, installation, and citation, and create one classifier called functionality. <br>There are 3 columns in extended_description.csv, extended_installation.csv, extended_invocation.csv, and extended_citation.csv.URL: the link of the repositorycontributor: the person who found this repositoryexcerpt: sentences related to the specific class, such as description, installation, invocation, and citation.<br>In addition to these 3 columns, function.csv includes one more column, label. We created it manually based on the excerpt. There are 3 kinds of labels (classes): data preparation, data analysis, and data visualization.<br>More details about FAMEF can be checked on Github (https://github.com/liling10822/FAMEF).
DOI: 10.6084/m9.figshare.13218755.v2
title: FAMEF

description: Description: FAMEF includes 5 CSV files totally. They are extended_description.csv, extended_installation.csv, extended_invocation.csv, extended_citation.csv, and function.csv. All of them are used to train and test models. We used them to update four classifiers which are description, installation, and citation, and create one classifier called functionality. <br>There are 3 columns in extended_description.csv, extended_installation.csv, extended_invocation.csv, and extended_citation.csv.URL: the link of the repositorycontributor: the person who found this repositoryexcerpt: sentences related to the specific class, such as description, installation, invocation, and citation.<br>In addition to these 3 columns, function.csv includes one more column, label. We created it manually based on the excerpt. There are 3 kinds of labels (classes): data preparation, data analysis, and data visualization.<br>More details about FAMEF can be checked on Github (https://github.com/liling10822/FAMEF).
DOI: 10.17638/datacat.liverpool.ac.uk/1199
title: Local Authority Finance: Children's and Young People's Services (s251) - Youth Justice (FIN_07_57)
DOI: 10.5281/zenodo.4305046
title: Natural hybrid origin of a controversial "species", Clematis pinnata (Ranunculaceae), based on multidisciplinary evidence

description: Hybridization is common and has often been viewed as a driving force of plant diversity. However, it may raise problems in taxonomy, biodiversity estimation, and biological conservation. Although previous molecular phylogenetic studies suggested that hybridization may be rather common in <em>Clematis</em>, and artificial hybridization has been widely applied to produce new <em>Clematis</em> cultivars for nearly two centuries, the issue of natural hybridization of <em>Clematis</em> has never been addressed in detail. In this study, we tested the hybrid origin of <em>Clematis</em> <em>pinnata</em>, a rare and taxonomically controversial species distributed in northern China. Using field observations, morphological statistics, flow cytometry, niche modelling, and phylogenomic analysis, we tested the hypothesis of the possible hybrid origin of <em>C. pinnata</em>. The results show morphologically intermediacy of <em>C. pinnata</em> between the putative progenitors. Homoploidy among all the tested species is confirmed by flow cytometric analysis. Niche modelling results demonstrate that <em>C. pinnata</em> had not been adapted to a novel ecological niche independent of its putative parents. The plastome phylogeny indicates that <em>C. pinnata</em> plants in different sampling sites originated by different hybridization events. Phylonet and HyDe analyses based on transcriptome data corroborate the hybrid origins of<em> C. pinnata</em> from <em>C. brevicaudata</em>×<em>C. heracleifolia</em>/<em>C. tubulosa</em>. Rare introgression event between <em>C. brevicaudata</em> and <em>C. heracleifolia</em>/<em>C. tubulosa</em> was also detected in this study. These findings show that <em>C. pinnata</em> is representing F1 progeny or early generation hybrids of its parental species and evolved independently in different sites. The present study also indicates that interspecific or even intersectional hybridization is a common mechanism that the genus <em>Clematis</em> uses to generate diversity and variation, and it may play an important role in the evolution and diversification of this genus. Our study implies that morphological diversity caused by natural hybridization may overstate the real species diversity in <em>Clematis</em>.
DOI: 10.5281/zenodo.4305045
title: Natural hybrid origin of a controversial "species", Clematis pinnata (Ranunculaceae), based on multidisciplinary evidence

description: Hybridization is common and has often been viewed as a driving force of plant diversity. However, it may raise problems in taxonomy, biodiversity estimation, and biological conservation. Although previous molecular phylogenetic studies suggested that hybridization may be rather common in <em>Clematis</em>, and artificial hybridization has been widely applied to produce new <em>Clematis</em> cultivars for nearly two centuries, the issue of natural hybridization of <em>Clematis</em> has never been addressed in detail. In this study, we tested the hybrid origin of <em>Clematis</em> <em>pinnata</em>, a rare and taxonomically controversial species distributed in northern China. Using field observations, morphological statistics, flow cytometry, niche modelling, and phylogenomic analysis, we tested the hypothesis of the possible hybrid origin of <em>C. pinnata</em>. The results show morphologically intermediacy of <em>C. pinnata</em> between the putative progenitors. Homoploidy among all the tested species is confirmed by flow cytometric analysis. Niche modelling results demonstrate that <em>C. pinnata</em> had not been adapted to a novel ecological niche independent of its putative parents. The plastome phylogeny indicates that <em>C. pinnata</em> plants in different sampling sites originated by different hybridization events. Phylonet and HyDe analyses based on transcriptome data corroborate the hybrid origins of<em> C. pinnata</em> from <em>C. brevicaudata</em>×<em>C. heracleifolia</em>/<em>C. tubulosa</em>. Rare introgression event between <em>C. brevicaudata</em> and <em>C. heracleifolia</em>/<em>C. tubulosa</em> was also detected in this study. These findings show that <em>C. pinnata</em> is representing F1 progeny or early generation hybrids of its parental species and evolved independently in different sites. The present study also indicates that interspecific or even intersectional hybridization is a common mechanism that the genus <em>Clematis</em> uses to generate diversity and variation, and it may play an important role in the evolution and diversification of this genus. Our study implies that morphological diversity caused by natural hybridization may overstate the real species diversity in <em>Clematis</em>.
DOI: 10.6084/m9.figshare.13065986.v27
title: Gastric cancer lymph node data set

description: This is a dataset of pathological lymph nodes for gastric cancer. It can be used to test a gastric cancer lymph node metastasis detection model proposed in "Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning".<br>
DOI: 10.6084/m9.figshare.13240637.v1
title: Experimentally testing the response of feral cats and their prey to poison baiting

description: This dataset is associated with the scientific paper of the same name. We used camera traps to monitor the response of feral cats (<i>Felis catus</i>) to poison baiting using a repeated before-after, control-impact design over six years. We also measured introduced rabbit (<i>Oryctolagus cuniculus</i>) activity using sand pads and native small mammal and reptile capture rates using pitfall trapping. The datasets include detection histories and activity indices of cats on cameras, and data relating to rainfall, rabbit activity, and small mammal and reptile capture rates.
DOI: 10.7910/dvn/ldpulo
title: Replication Data for: Partisan-Motivated Evaluations of Sexual Misconduct and the Mitigating Role of the #MeToo Movement

description: Data and code.
DOI: 10.25959/5fc9b098bf588
title: Supplementary data for Geology and geochronology of the Two-Thirty Prospect, Northparkes district, NSW
DOI: 10.15472/pwjqqa
title: Herpetofauna de la Cienaga de Beté, Municipio del Medio Atrato, Chocó - 2018

description: Los ecosistemas cenagoso de la cuenca del Atrato contituyen espacion de una excepcional riqueza faunística fundamentales para la region del Atrato, cumpliendo con importantes funciones como lugar de descanso y alimentación de numerosas especies, siendo destacadas como áreas de importancia para especies migratorias tanto de peces como de aves, hábitat tipico de especies de anfibios como reptiles e importantes mamíferos, sin embargo la importancia individual de estos sistemas cenagosos del medio atrato se hace invaluable cuando se tiene en consideración los bienes y servicios ambientales que esto ecosistemas brindan a las comunidades asentadas a sus alrededores, proveyendo las principales fuentes abastecedoras de materias primas, recursos económicos y proteína a dichas comunidades. Sin embargo, a pesar de la relevancia que poseen los complejos cenagoso para la fauna y para las comunidades que de ellos se benefician, actualmente se encuentran expuestos a poteciales amenaza antrópicas que ponen en riesgo la capacidad de dicho ecosistema para generar bienes y servicios a las poblaciones humanas, lo que sumado a los vacios de información acerca de su biodiversidad y ecología, crean la necesidad de desarrolar dirigidas a generar conocimiento sobre sus potenciales faunísticos, el papel que las especies desempeñan en la funcionalidad y mantenimiento de estos ecosistemas y como toda esta dinámica se desarrolla en el tiempo. El levantamiento de la anterior información es de gran utilidad para la consolidación de instrumentos de manejo, ordenamiento y planificación de estos ecosistemas. Por lo tanto el presente estudio tiene como propósito monitorear los procesos ecológicos de la fauna que permitan identificar la denamiaca del estado de conservacion y la riqueza fuanistica de la ciénaga de Bete.
DOI: 10.6084/m9.figshare.13331507
title: API2Can-test

description: API2CAN Test Dataset
DOI: 10.6084/m9.figshare.13331564
title: API2Can-train

description: API2Can Training Dataset
DOI: 10.6084/m9.figshare.13331618
title: Additional file 4 of Comparison of two ASC-derived therapeutics in an in vitro OA model: secretome versus extracellular vesicles

description: Additional file 4: Supplementary Table 1. ASC features. Details of culture conditions (CTRL, Osteoinduction and Adipoinduction) and performed assays are reported. Supplementary Table 2. Functional enriched processes identified with STRING through OA-related keywords (Chondro-, Metabol-,Catabol-, Inflamm- and Matrix). GO: Gene ontology identifier. Supplementary Table 3.Quantification of OA-related factors in ASC-CM (n = 3) expressed as mean ± SD. Details of the biological processes in which each factors is involved, according to Supplementary Table 2, are also provided. Supplementary Table 4. Principal Component Analysis (PCA) details by XLSTAT software. Number of factors analyzed for each OA-related keyword are reported in brackets. Supplementary Table 5. nLC-MS/MS quantification of OA-related factors in ASC-CM and ASC-EV (n = 3). Factors significantly different between CM and EV samples are in bold. Proteins more abundant in EV that in CM are highlighted in gray.