cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/njb7w7t25g.1
title: Data for: Paleo-redox context of the Mid-Devonian Appalachian basin: relevance to biocrises and deposition of the Marcellus shale

description: Geochemical data
DOI: 10.17632/n78399cwbj.1
title: Data for: Stable chromium isotope fractionation during magmatic differentiation: Insights from Hawaiian basalts and implications for planetary redox conditions

description: Chromium isotope composition relative to NIST SRM979 of Hawaiian basalts performed by TIMS at DTM.
DOI: 10.6084/m9.figshare.13901468
title: Supplementary Material for: First Detection of a Cluster Novel HIV-1 Second-Generation Recombinant (CRF01_AE/CRF07_BC) among Men Who Have Sex with Men in Nanjing, Eastern China

description: <b><i>Introduction:</i></b> A large number of unique recombinant forms have been found in China in recent years. This study aimed to report on a cluster of novel HIV-1 recombinants. <b><i>Methods:</i></b> We constructed phylogenetic trees using the maximum likelihood (ML) method with 1,000 bootstrap replicates in IQ-TREE 1.6.8 software and determined recombination break points using SimPlot 3.5.1. <b><i>Results:</i></b> Overall, 9 near-full-length genome (NFLG) sequences were reported in this study, including 1 circulation recombinant form (CRF)01_AE NFLG sequence and 8 highly similar novel HIV-1 second-generation recombinants composed of CRF01_AE and CRF07_BC (CRF105_0107) isolated from a cluster HIV-positive male subjects infected among men who have sex with men (MSM) in Nanjing, eastern China. The phylogenetic analysis of NFLG showed 1 sequence named “nj16” to have at least 11 breakpoints inner virus and 7 other sequences to have at least 10 breakpoints inner virus. Our findings further showed as follows: first, this is the first time that a cluster of novel CRF105_0107 HIV-1 strains were identified among MSM in Nanjing, Jiangsu. Second, the Chinese “4a” cluster of CRF01_AE which mainly circulating in northern China has spread in Jiangsu for more than 15 years. Third, HIV-1 recombination events were active in Nanjing city, and novel recombinants could spread rapidly through some small-scale transmission networks. <b><i>Conclusion:</i></b> The continued emergence of novel recombinant HIV-1 strains in Nanjing suggests dynamics and complexity in the HIV epidemic among MSM in Jiangsu province. Further investigations and molecular epidemiological research should be taken to monitor and understand transmission networks among MSM.
DOI: 10.6084/m9.figshare.12459065.v4
title: Dataset - Intraspecific diversity loss in a predator species alters prey community structure and ecosystem functions

description: Loss in intraspecific diversity can alter ecosystem functions, but the underlying mechanisms are still elusive, and intraspecific biodiversity-ecosystem function relationships (iBEFs) have been restrained to primary producers. Here, we manipulated genetic and functional richness of a fish consumer (<i>Phoxinus phoxinus</i>), to test whether iBEFs exist in consumer species, and whether they are more likely sustained by genetic or functional richness. We found that both genotypic and functional richness affected ecosystem functioning, either independently or in interaction. Loss in genotypic richness reduced benthic invertebrate diversity consistently across functional richness treatments, whereas it reduced zooplankton diversity only when functional richness was high. Finally, both losses in genotypic and functional richness altered essential functions (e.g. decomposition) through trophic cascades. We concluded that iBEFs lead to substantial top-down effects on entire food chains. The loss of genotypic richness was similarly prejudicial than the loss of functional richness, probably because it sustains “cryptic” functional diversity.
DOI: 10.20351/29he19920201
title: SCOTIA-92 Cruise, RV Hespérides

description: SCOTIA-92 Cruise (29HE19920201) carried out on the Research Vessel Hespérides in 1992
DOI: 10.6084/m9.figshare.13898174
title: Supplementary Material for: Screening for Retinopathy of Prematurity in Very Preterm Children: The EPIPAGE-2 Cohort Study

description: <b><i>Introduction:</i></b> Retinopathy of prematurity (ROP) is a blinding disease that requires screening by retinal examination. Screening practices are rarely evaluated. We aimed to determine the prevalence of ROP screening in very preterm infants and individual- and center-related factors associated with ROP screening. <b><i>Methods:</i></b> Data were extracted from the EPIPAGE-2 cohort, a French prospective population-based study of premature births in 2011. Children born before 32 weeks’ gestation (WG) without severe malformation and alive at the recommended time for ROP screening were included. Outcome measures were achievement of ROP screening and compliance with recommended screening timeline. Individual- and center-related factors associated with both measures were studied using mixed models. <b><i>Results:</i></b> Among 3,077 eligible infants, 2,169 (70.5%) had a ROP screening, ranging from 96% at 24 WG to 50% at 31 WG. Large variability among units was observed. Individual characteristics associated with screening were low gestational age, low birth weight, severe bronchopulmonary dysplasia or neurological lesions, and transfer between neonatal units during the screening period. Odds of screening were higher in neonatal units using wide-angle imaging (odds ratio 2.65 [95% confidence interval 1.17–6.01]) but decreased in units without a local protocol for ROP screening (0.03 [0.01–0.09]). Among screened children, 1,641/2,169 (75.7%) were screened according to recommended timeline. Delayed screening was associated with low gestational age, severe bronchopulmonary dysplasia or necrotizing enterocolitis, and absence of local protocol for ROP screening. <b><i>Discussion/Conclusions:</i></b> In this large cohort study of infants born very preterm, almost one-third were not screened for ROP. Children most at risk for ROP were the best screened but often with delay. The higher compliance of neonatal units using wide-angle imaging systems supports its use.
DOI: 10.6084/m9.figshare.13897820
title: Supplementary Material for: An Improved Scoring System Based on Platelet-Albumin-Bilirubin in Predicting Posthepatectomy Liver Failure Outcomes

description: <b><i>Background:</i></b> Posthepatectomy liver failure (PHLF) is one of the major complications of liver resection that causes perioperative mortality. Accurate preoperative assessment of PHLF is of great significance to reduce the complication rate after hepatectomy and improve the survival rate. <b><i>Methods:</i></b> A retrospective study of patients who received hepatectomy from January 2016 to October 2019 at Tang Du Hospital was performed. The area under the receiver operating characteristic (ROC) curve was used to compare the predictive effects of various scoring models on PHLF. <b><i>Results:</i></b> The area under the ROC curve of platelet-albumin-bilirubin (PALBI) score, new platelet-albumin-bilirubin (I-PALBI) score, ALBI score, and MELD score was, respectively, 0.647, 0.772, 0.677, and 0.686 (<i>p</i> &lt; 0.01). The I-PALBI score was significantly better than the other scores. <b><i>Conclusions:</i></b> I-PALBI score can be used as a predictive score of PHLF, and its prediction accuracy is better than other scoring systems.
DOI: 10.20351/29he19911128
title: BRANSFIELD Cruise, RV Hespérides

description: BRANSFIELD Cruise (29HE19911128) carried out on the Research Vessel Hespérides in 1991
DOI: 10.6084/m9.figshare.13897820.v1
title: Supplementary Material for: An Improved Scoring System Based on Platelet-Albumin-Bilirubin in Predicting Posthepatectomy Liver Failure Outcomes

description: <b><i>Background:</i></b> Posthepatectomy liver failure (PHLF) is one of the major complications of liver resection that causes perioperative mortality. Accurate preoperative assessment of PHLF is of great significance to reduce the complication rate after hepatectomy and improve the survival rate. <b><i>Methods:</i></b> A retrospective study of patients who received hepatectomy from January 2016 to October 2019 at Tang Du Hospital was performed. The area under the receiver operating characteristic (ROC) curve was used to compare the predictive effects of various scoring models on PHLF. <b><i>Results:</i></b> The area under the ROC curve of platelet-albumin-bilirubin (PALBI) score, new platelet-albumin-bilirubin (I-PALBI) score, ALBI score, and MELD score was, respectively, 0.647, 0.772, 0.677, and 0.686 (<i>p</i> &lt; 0.01). The I-PALBI score was significantly better than the other scores. <b><i>Conclusions:</i></b> I-PALBI score can be used as a predictive score of PHLF, and its prediction accuracy is better than other scoring systems.
DOI: 10.6084/m9.figshare.12459065.v5
title: Dataset - Intraspecific diversity loss in a predator species alters prey community structure and ecosystem functions

description: Loss in intraspecific diversity can alter ecosystem functions, but the underlying mechanisms are still elusive, and intraspecific biodiversity-ecosystem function relationships (iBEFs) have been restrained to primary producers. Here, we manipulated genetic and functional richness of a fish consumer (<i>Phoxinus phoxinus</i>), to test whether iBEFs exist in consumer species, and whether they are more likely sustained by genetic or functional richness. We found that both genotypic and functional richness affected ecosystem functioning, either independently or in interaction. Loss in genotypic richness reduced benthic invertebrate diversity consistently across functional richness treatments, whereas it reduced zooplankton diversity only when functional richness was high. Finally, both losses in genotypic and functional richness altered essential functions (e.g. decomposition) through trophic cascades. We concluded that iBEFs lead to substantial top-down effects on entire food chains. The loss of genotypic richness was similarly prejudicial than the loss of functional richness, probably because it sustains “cryptic” functional diversity.
DOI: 10.17632/pjvbhn6mwy.1
title: Data for: Tracing subducted oceanic slabs in the mantle by using potassium isotopes

description: Potassium isotopic data for a suite of well-characterized continental basaltic lavas from Northeast China to explore mantle K isotopic heterogeneity related to crustal recycling.
DOI: 10.5519/qd.eph66l8w
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5764 records)
DOI: 10.17632/w54ss36nz3.1
title: Data for: Uptake of gaseous Thallium, Tellurium and Vanadium into fumarole alums and implication for trace metal degassing (Lascar volcano, Chile)

description: Major, trace and isotope (O, Pb) composition of a fumarolic crust from the Lascar volcano (Chile) Table S1 : In situ major and trace element concentrations Table S2 : In situ oxygen isotope composition Table S3 : Bulk Pb and Sr isotope compositions
DOI: 10.5281/zenodo.4534140
title: Data set from Barello S, Nania T, Dellafiore F, Graffigna G, Caruso R. 'Vaccine hesitancy' among university students in Italy during the COVID-19 pandemic. Eur J Epidemiol. 2020 Aug;35(8):781-783. doi: 10.1007/s10654-020-00670-z. Epub 2020 Aug 6. PMID: 32761440; PMCID: PMC7409616.

description: Dataset from the article Barello S, Nania T, Dellafiore F, Graffigna G, Caruso R. 'Vaccine hesitancy' among university students in Italy during the COVID-19 pandemic. Eur J Epidemiol. 2020 Aug;35(8):781-783. doi: 10.1007/s10654-020-00670-z. Epub 2020 Aug 6. PMID: 32761440; PMCID: PMC7409616. <strong>Abstract</strong> The debate around vaccines has been in the spotlight over the last few years in Europe, both within the scientific community and the general public debate. In this regard, the case of the Italian vaccination debate is particularly worrying given that Italy has been one of the European countries with the highest number of measles cases in the recent past. According to this scenario, we conducted a cross-sectional study on a convenience sample of Italian university students aimed at: (1) exploring their attitudes towards a future vaccine to prevent COVID-19 and; (2) evaluating the impact of the university curricula (healthcare vs. non-healthcare curricula) on the intention to vaccinate. Descriptive analysis on the 735 students that answered to the question on the intention to vaccinate showed that 633 (86.1%) students reported that they would choose to have a vaccination for the COVID-19 coronavirus; on the other side, 102 (13.9%) students reported that they would not or be not sure to vaccine (low intention to vaccinate). This means that in our sample more than one student out of 10 shows low intention to vaccinate (vaccine hesitancy). Furthermore, when running analysis comparing healthcare students versus non-healthcare students we found no significant differences in responses' percentage distribution (p = .097). Understanding the student's perspective about the future COVID-19 vaccine and supporting their health engagement and consciousness may be useful in planning adequate response and multidisciplinary educational strategies-including the psychological perspective on vaccine hesitancy underlying factors - in the post-pandemic period.
DOI: 10.5281/zenodo.4534139
title: Data set from Barello S, Nania T, Dellafiore F, Graffigna G, Caruso R. 'Vaccine hesitancy' among university students in Italy during the COVID-19 pandemic. Eur J Epidemiol. 2020 Aug;35(8):781-783. doi: 10.1007/s10654-020-00670-z. Epub 2020 Aug 6. PMID: 32761440; PMCID: PMC7409616.

description: Dataset from the article Barello S, Nania T, Dellafiore F, Graffigna G, Caruso R. 'Vaccine hesitancy' among university students in Italy during the COVID-19 pandemic. Eur J Epidemiol. 2020 Aug;35(8):781-783. doi: 10.1007/s10654-020-00670-z. Epub 2020 Aug 6. PMID: 32761440; PMCID: PMC7409616. <strong>Abstract</strong> The debate around vaccines has been in the spotlight over the last few years in Europe, both within the scientific community and the general public debate. In this regard, the case of the Italian vaccination debate is particularly worrying given that Italy has been one of the European countries with the highest number of measles cases in the recent past. According to this scenario, we conducted a cross-sectional study on a convenience sample of Italian university students aimed at: (1) exploring their attitudes towards a future vaccine to prevent COVID-19 and; (2) evaluating the impact of the university curricula (healthcare vs. non-healthcare curricula) on the intention to vaccinate. Descriptive analysis on the 735 students that answered to the question on the intention to vaccinate showed that 633 (86.1%) students reported that they would choose to have a vaccination for the COVID-19 coronavirus; on the other side, 102 (13.9%) students reported that they would not or be not sure to vaccine (low intention to vaccinate). This means that in our sample more than one student out of 10 shows low intention to vaccinate (vaccine hesitancy). Furthermore, when running analysis comparing healthcare students versus non-healthcare students we found no significant differences in responses' percentage distribution (p = .097). Understanding the student's perspective about the future COVID-19 vaccine and supporting their health engagement and consciousness may be useful in planning adequate response and multidisciplinary educational strategies-including the psychological perspective on vaccine hesitancy underlying factors - in the post-pandemic period.
DOI: 10.17632/nhgv9fg3z6.1
title: Data for: An experimentally-validated numerical model of diffusion and speciation of water in silicate melt with applications to rhyolitic volcanism

description: This dataset includes the original diffusion-couple FTIR analyses by Nowak and Behrens., (1997), and our re-analysis of select samples at Bristol University. Included are the position along the diffusion axis, concentration, and the associated % error for the re-analysed samples.
DOI: 10.20351/29he19960214
title: DRAKE-96 Cruise, RV Hespérides

description: DRAKE-96 Cruise (29HE19960214) carried out on the Research Vessel Hespérides in 1996
DOI: 10.17632/th9p4rsvs2.1
title: Data for: Beyond redox: control of trace-metal enrichment in anoxic marine facies by watermass chemistry and sedimentation rate

description: 1. the geochemical data for modern black sea sediments; 2. the geochemical data for Devonian black shale
DOI: 10.17632/rn4bmt8s4k.1
title: Data for: Controls on the shuttling of manganese over the northwestern Black Sea shelf and its fate in the euxinic deep basin

description: Porewater, solid phase, water column data.
DOI: 10.5517/ccdc.csd.cc249q28
title: CCDC 1975539: Experimental Crystal Structure Determination

description: Related Article: Atsushi Kobayashi, Shin-ichiro Imada, Dongjin Wang, Yuki Nagao, Masaki Yoshida, Masako Kato|2021|Faraday Discuss.|225|184|doi:10.1039/D0FD00001A
DOI: 10.17632/v3zyn8n57c.1
title: Data for: Diffusion-driven extreme Mg and Fe isotope fractionation in Panzhihua ilmenite: Implications for the origin of mafic intrusion

description: This table includes the Mg and Fe isotoic compositions of cumulus minerals
DOI: 10.17632/wcnhzj96hr.1
title: Data for: Metastable Solubility and Local Structure of Amorphous Calcium Carbonate (ACC)

description: Complete list of initial conditions, measured, and calculated compositions of precipitates and solutions from all experiments reported in our study.
DOI: 10.20351/29he19970926
title: FILAMENT Cruise, RV Hespérides

description: FILAMENT Cruise (29HE19970926) carried out on the Research Vessel Hespérides in 1997
DOI: 10.17632/cyp5pwtfs8.1
title: Data for: Molybdenum isotope fractionation in uranium oxides and during key processes of the nuclear fuel cycle: Towards a new nuclear forensic tool

description: This Mo isotope data set was obtained for U ores, U minerals and Uranium ore concentrations. It includes also the results of solvent extraction and precipitation experiments. The data set is described and explained in an article by Migeon et al. in Geochimica and Cosmochimica Acta.
DOI: 10.17632/nff4s4ffjb.1
title: Data for: Silicate Weathering in Antarctic Ice-Rich Permafrost: Insights Using Magnesium Isotopes

description: Raw data collected from a 30-meter ice cemented permafrost core collected in Beacon Valley, Antarctica. Includes cations, anions, XRF, Mg isotopic composition, XRD, particle size, pH and ice-content.
DOI: 10.17632/j24n2n9z3v.1
title: Data for: Heterogeneous potassium isotopic composition of the upper continental crust

description: K isotopic data of the upper continental crust
DOI: 10.17632/rgr2375zrw.1
title: Data for: Lithium isotopes may trace subducting slab signatures in Aleutian arc lavas and intrusions

description: Major element, trace element, and isotope data used in "Lithium isotopes may trace subducting slab signatures in Aleutian arc lavas and intrusions" by Hanna et al.
DOI: 10.17632/db63h5dp6y.1
title: Data for: An experimental study of peridotite dissolution in eclogite melts: implications for styles of melt-rock interaction in lithospheric mantle beneath the North China Craton

description: These data are melt and mineral compositions obtained from experiments of reaction between lherzolite and eclogite-derived melt at 1300-1425°C and 2 GPa.
DOI: 10.17632/v7h5y9y82r.1
title: Data for: Eoarchean to Paleoproterozoic evolution of the lower crust under the North China Craton: evidence from U-Pb and Hf-O isotopes of zircons from deep-crustal xenoliths

description: Zircon U-Pb-Hf-O data for lower-crustal xenoliths from Phanerozoic igneous rocks in the North China Craton
DOI: 10.5880/sfb806.62
title: Granulometric and colorimetric data of the Crvenka-At Early Upper Paleolithic Site, Serbia

description: These datasets contain the color and grain size data for trenches 3, 3A, and 5 of the At site described in Nett et al. (2021). Sampling depths and laboratory numbers are given. Grain size was measured with a Laser Diffraction Particle Size Analyzer (Beckman Coulter LS 13 320) calculating the percentaged size frequency of 116 classes within a size range of 0.04–2000.00 µm (2% uncertainty). The measurement accuracy was increased by measuring each sample four times in two different concentrations. The grain size distributions were determined using the Mie theory (ISO International Standard 13320, 2009; Fluid RI: 1.33; Sample RI: 1.55; Imaginary RI: 0.1; Özer et al., 2010; cf. Schulte et al., 2016). The colorimetric properties of the sediments were determined as described in e.g. Eckmeier et al. (2013) and Vlaminck et al. (2016) using a Konica Minolta CM-5 spectrophotometer after the samples were homogenized and dried. The L*a*b* values indicate the extinction of light, on a scale from L* 0 (absolute black) to L* 100 (absolute white) and express color as chromaticity coordinates on red-green (a*) and blue-yellow (b*) scales. References Eckmeier, E., Mavris, C., Krebs, R., Pichler, B., and Egli, M. (2013). Black carbon contributes to organic matter in young soils in the Morteratsch proglacial area (Switzerland). Biogeosciences 10, 1265–1274. doi:10.5194/bg-10-1265-2013. Nett, J.J., Chu, W., Fischer, P., Hambach, U., Klasen, N., Zeeden, C., Obreht, I., Obrocki, L., Pötter, S., Gavrilov, M.B., Vött, A., Mihailovic, D., Markovic, S.B., and Lehmkuhl, F. (2021). The Early Upper Paleolithic site Crvenka-At, Serbia - The First Aurignacian Lowland Occupation Site in the southern Carpathian Basin. Front. Earth Sci. 9: 599986. Doi: 10.3389/feart.2021.599986. Özer, M., Orhan, M., and Işik, N. S. (2010). Effect of particle optical properties on size distribution of soils obtained by laser diffraction. Environ. Eng. Geosci. 16, 163–173. Schulte, P., Lehmkuhl, F., Steininger, F., Loibl, D., Lockot, G., Protze, J., et al. (2016). Influence of HCl pretreatment and organo-mineral complexes on laser diffraction measurement of loess–paleosol-sequences. Catena 137, 392–405. doi:10.1016/j.catena.2015.10.015. Vlaminck, S., Kehl, M., Lauer, T., Shahriari, A., Sharifi, J., Eckmeier, E., et al. (2016). Loess-soil sequence at Toshan (Northern Iran): Insights into Late Pleistocene climate change. Quat. Int. 399, 122–135. doi:10.1016/j.quaint.2015.04.028.
DOI: 10.17632/dztbtthvzf.1
title: Data for: An SPO-induced CPO in composite mantle xenoliths correlated with increasing melt-rock interaction

description: Excel files containing major, trace element, and water concentration data for olivine and pyroxene