cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8czdtr
title: Occurrence Download

description: A dataset containing 62862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rangifer tarandus",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 62862 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045282-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kqchwa
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ischnocnema karst"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045351-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/nxy9-p662
title: "Soil Moisture Spring 2010 Casselman Canada"

description: "This is a dataset of surface volumetric soil moisture collected using ThetaProbes. Measurements were taken on bare agricultural fields near Casselman, Ontario, Canada. Data collection occurred in the Spring of 2010 (April 16 to May 13) prior to spring seeding."
DOI: 10.15468/dl.bkbfu9
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydroides ralumiana",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 28 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045352-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c51j97n3m
title: MassIVE MSV000100174 - Abundance of the major extracellular protease Jep is stress-responsive in the mouse-adapted Staphylococcus aureus JSNZ - Cellular fraction
title: The opportunistic pathogen Staphylococcus aureus colonizes a broad spectrum of different hosts and niches. In recent years it was shown that mouse-adapted S. aureus strains are more suitable candidates to investigate S. aureus infections in the in vivo mouse model. One of the most studied mouse-adapted strain is JSNZ. Under control conditions at 37C, JSNZ secrets the highly abundant serine protease Jep (JSNZ extracellular protease), which is located on phi_LabRoddCC88_3. Due to the ability of S. aureus to colonize a broad variety of niches, we opted to investigate Jep expression under several physiological stresses such as different temperatures (37C, 42C and 32C) and limiting conditions (iron and oxygen limitation) on transcript and protein level. In silico predictions and Northern blot revealed a that jep is encoded monocistronic with an approximate transcript length of 900 bp. In the different stress conditions, jep transcript levels increases over time in a temperature-dependent manner. Contrastingly, secreted Jep increases in all conditions over time reaching a plateau in stationary phase. Mass spectrometry analysis proves that Jep is the major protein in JSNZ supernatant making up to 75% not only at 37C but also at 42C and under iron-limitation. The protein level of Jep correlates highly with other secreted proteases of JSNZ. Jep shows a phage-independent regulation. Analysis of co-regulated regulons to Jep and additional in silico analysis revealed SaeR and PurR as potential regulators of jep.
DOI: 10.15468/dl.phmyc9
title: Occurrence Download

description: A dataset containing 21101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Loxodonta africana",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 21101 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045353-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rqu457
title: Occurrence Download

description: A dataset containing 1406 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aneides lugubris",
 "Year 2013-2019"
 ]
}

 The dataset includes 1406 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045355-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/46dsdu
title: A New Species of Flaviellus Gordon and Skelley, 2007 (Coleoptera: Scarabaeidae: Aphodiinae) from the Yukon, Canada

description: This dataset contains the digitized treatments in Plazi based on the original journal article Smith, Andrew B. T., Skelley, Paul E. (2020): A New Species of Flaviellus Gordon and Skelley, 2007 (Coleoptera: Scarabaeidae: Aphodiinae) from the Yukon, Canada. The Coleopterists Bulletin 74 (1): 101-105, DOI: 10.1649/0010-065X-74.1.101, URL: http://dx.doi.org/10.1649/0010-065x-74.1.101
DOI: 10.15468/dl.3y52jn
title: Occurrence Download

description: A dataset containing 290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Protula bispiralis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 290 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045357-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/989knx
title: Morphological and molecular characterization of a new species of Hadronotus Förster (Hymenoptera: Scelionidae) reared from reduviid eggs in India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Debnath, Rupam, Reddy, B. Thirupam, Rajmohana, K., Dinesh, K. P. (2025): Morphological and molecular characterization of a new species of Hadronotus Förster (Hymenoptera: Scelionidae) reared from reduviid eggs in India. Zootaxa 5711 (3): 424-434, DOI: 10.11646/zootaxa.5711.3.7, URL: https://doi.org/10.11646/zootaxa.5711.3.7AbstractHadronotus omnistriatus Debnath, Rajmohana and Thirupam Reddy sp. nov. (Hymenoptera: Scelionidae) is described herein as new to science from India under the ‘ muscaeformis ’ species group. The specimens were reared from eggs of a reduviid host (Hemiptera: Reduviidae). A detailed morphological description is provided, along with its DNA barcode data. A single gene-based molecular phylogenetic analysis on the mitochondrial cytochrome c oxidase I is presented to support the delineation of the new species. Additionally, a checklist of Hadronotus species reported from India is provided.
DOI: 10.5281/zenodo.17769911
title: Emotional Genes: A Bio-Inspired Multimodal Emotion Recognition Framework via DNA Sequence Encoding and DNA-BERT

description: Multimodal emotion recognition (MER) infers human affect from signals such as EEG, facial expressions, speech, and text, yet remains challenged by temporal asynchrony, semantic inconsistency, and distributional heterogeneity. We propose SW-DNABERT, a framework that formulates MER as symbolic sequence modeling. It decomposes each modality into multi-scale atoms, encodes them into DNA-like sequences and employs entropy-regularized optimal transport to align sequences according to their cross-modal handshake strength, which reflects the coupling intensity between emotional patterns across modalities.

The gene handshake strength is a quantitative metric describing the degree of coupling between two emotional gene units. It captures the extent to which different modalities exhibit joint activation, pattern consistency, and mutual reinforcement under the same emotional state. Inspired by biological base-pair coupling in DNA, the metric evaluates whether, for instance, an EEG pattern and a facial-expression pattern are “handshaking,” and whether the handshake is strong enough to signify a coherent emotional signal.

A higher handshake strength indicates greater cross-modal consistency, synchrony, and reliability among emotional gene units, whereas a lower strength suggests cross-modal disagreement or noise. In the proposed model, the handshake strength is intrinsically linked to the entropy-regularized Optimal Transport formulation.

Related Datasets

The proposed implementation is evaluated on the following public benchmark datasets (all datasets are used in their heatmap-based feature representations in this study):





CMU-MOSEI




MELD




IEMOCAP




MER




rPPG–EEG



File Description





CSV files: Contain numerical datasets composed of multi-scale extracted features.




diagram/: Heatmaps generated from multimodal feature representations.




DNAbert_for_classification_transition/: Source code implementing the  classifier.


encoder_5.zip contains multiple DNA encoding schemes designed in our study.


Authorship Note

Guoming Chen and Qinru Guo contributed equally to this work and are co–first authors.
DOI: 10.5281/zenodo.17769910
title: Emotional Genes: A Bio-Inspired Multimodal Emotion Recognition Framework via DNA Sequence Encoding and DNA-BERT

description: Multimodal emotion recognition (MER) infers human affect from signals such as EEG, facial expressions, speech, and text, yet remains challenged by temporal asynchrony, semantic inconsistency, and distributional heterogeneity. We propose SW-DNABERT, a framework that formulates MER as symbolic sequence modeling. It decomposes each modality into multi-scale atoms, encodes them into DNA-like sequences and employs entropy-regularized optimal transport to align sequences according to their cross-modal handshake strength, which reflects the coupling intensity between emotional patterns across modalities.

The gene handshake strength is a quantitative metric describing the degree of coupling between two emotional gene units. It captures the extent to which different modalities exhibit joint activation, pattern consistency, and mutual reinforcement under the same emotional state. Inspired by biological base-pair coupling in DNA, the metric evaluates whether, for instance, an EEG pattern and a facial-expression pattern are “handshaking,” and whether the handshake is strong enough to signify a coherent emotional signal.

A higher handshake strength indicates greater cross-modal consistency, synchrony, and reliability among emotional gene units, whereas a lower strength suggests cross-modal disagreement or noise. In the proposed model, the handshake strength is intrinsically linked to the entropy-regularized Optimal Transport formulation.

Related Datasets

The proposed implementation is evaluated on the following public benchmark datasets (all datasets are used in their heatmap-based feature representations in this study):





CMU-MOSEI




MELD




IEMOCAP




MER




rPPG–EEG



File Description





CSV files: Contain numerical datasets composed of multi-scale extracted features.




diagram/: Heatmaps generated from multimodal feature representations.




DNAbert_for_classification_transition/: Source code implementing the  classifier.


encoder_5.zip contains multiple DNA encoding schemes designed in our study.


Authorship Note

Guoming Chen and Qinru Guo contributed equally to this work and are co–first authors.
DOI: 10.15468/dl.3t2q7p
title: Occurrence Download

description: A dataset containing 1154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-74.96697626418987 5.614196336429316,-70.96697626418987 5.614196336429316,-70.96697626418987 9.614196336429316,-74.96697626418987 9.614196336429316,-74.96697626418987 5.614196336429316))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Viburnum"
 ]
}

 The dataset includes 1154 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045358-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g7sc7k
title: Occurrence Download

description: A dataset containing 5473538 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasCoordinate is true",
 "Modified is 2025-11-08,2025-12-10",
 {
 "or" : [
 "License is CC0 1.0",
 "License is CC-BY 4.0"
 ]
 },
 {
 "not" : {
 "Issue" : [
 "is Zero coordinate"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Coordinate out of range"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Coordinate invalid"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Geodetic datum invalid"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Country mismatch"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Country invalid"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Continent coordinate mismatch"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Continent invalid"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Coordinate reprojection suspicious"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Coordinate reprojection failed"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Coordinate uncertainty meters invalid"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Taxon match none"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is Taxon match aggregate"
 ]
 }
 }
 ]
}

 The dataset includes 5473538 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045345-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k7hjxn
title: Occurrence Download

description: A dataset containing 9029 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elephas maximus",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 9029 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045359-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55ppy6
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dodecaceria fistulicola",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 25 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045360-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17884143
title: weecology/PortalData: 6.28.0

description: v6.28.0
DOI: 10.15468/dl.2gvwsp
title: Occurrence Download

description: A dataset containing 205 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ambystoma andersoni"
 ]
}

 The dataset includes 205 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045361-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17851068
title: SINE prediction information

description: SINE prediction information
DOI: 10.5281/zenodo.17851067
title: SINE prediction information

description: SINE prediction information
DOI: 10.6084/m9.figshare.30850826
title: <b>Afforestation increases soil carbon in warmer karst and is associated with calcium and bacterial networks rather than microbial carbon-use efficiency</b>

description: Afforestation is widely promoted to enhance soil carbon sequestration, yet its climatic dependence and the microbial and mineral mechanisms that mediate soil organic carbon (SOC) dynamics remain poorly understood. We compared 20-year-old plantations with long-term croplands across a subtropical karst climatic gradient−characterized by high microbial activity and mineral-rich soils−to evaluate how climate, minerals, and microbial processes jointly influence SOC. Across the study region, afforestation increased SOC by 58%; however, this increase was concentrated in warmer zones, with little change in cooler zones. SOC in croplands declined with increasing mean annual temperature (MAT), whereas SOC in plantations increased with MAT. The mineral-associated organic carbon fraction showed a matching temperature dependence. Multiple analyses indicated that microbial carbon use efficiency contributed little to SOC variation. Instead, microbial necromass, bacterial network complexity, and exchangeable calcium emerged as the strongest correlates of SOC and increased with temperature in plantations. These linked associations are consistent with a pathway in which temperature-driven shifts in microbial networks and calcium coincide with greater SOC accumulation after afforestation. These findings indicate a strong temperature dependence of afforestation-driven SOC gains in subtropical karst soils. Mineral-associated processes and microbial community structure, rather than microbial carbon use efficiency, were most closely associated with SOC accumulation and can inform targeted restoration strategies under future climate change.
DOI: 10.6084/m9.figshare.30850826.v1
title: <b>Afforestation increases soil carbon in warmer karst and is associated with calcium and bacterial networks rather than microbial carbon-use efficiency</b>

description: Afforestation is widely promoted to enhance soil carbon sequestration, yet its climatic dependence and the microbial and mineral mechanisms that mediate soil organic carbon (SOC) dynamics remain poorly understood. We compared 20-year-old plantations with long-term croplands across a subtropical karst climatic gradient−characterized by high microbial activity and mineral-rich soils−to evaluate how climate, minerals, and microbial processes jointly influence SOC. Across the study region, afforestation increased SOC by 58%; however, this increase was concentrated in warmer zones, with little change in cooler zones. SOC in croplands declined with increasing mean annual temperature (MAT), whereas SOC in plantations increased with MAT. The mineral-associated organic carbon fraction showed a matching temperature dependence. Multiple analyses indicated that microbial carbon use efficiency contributed little to SOC variation. Instead, microbial necromass, bacterial network complexity, and exchangeable calcium emerged as the strongest correlates of SOC and increased with temperature in plantations. These linked associations are consistent with a pathway in which temperature-driven shifts in microbial networks and calcium coincide with greater SOC accumulation after afforestation. These findings indicate a strong temperature dependence of afforestation-driven SOC gains in subtropical karst soils. Mineral-associated processes and microbial community structure, rather than microbial carbon use efficiency, were most closely associated with SOC accumulation and can inform targeted restoration strategies under future climate change.
DOI: 10.15468/dl.ug6jgd
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dodecaceria joubini",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045363-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4duz7b
title: Occurrence Download

description: A dataset containing 27378 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aluterus scriptus"
 ]
}

 The dataset includes 27378 records from 280 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045362-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bzz59f
title: Occurrence Download

description: A dataset containing 812 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Equus grevyi",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 812 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045364-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2vpxqw
title: Occurrence Download

description: A dataset containing 1598 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Biscutella intermedia Gouan"
 ]
}

 The dataset includes 1598 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156636-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hyrzcw
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Buddleja sessilifolia B.S.Sun ex S.Y.Bao"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016831-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-20193
title: Minute book no. 20, AoG GB, OMC July 1963 - Nov. 1965

description: [description english/roman)] Assemblies of God [AoG] OMC minute book No. 20 including OMC annual statement, 42 pages of index followed by 208 pages of minutes. All matters relating to Assemblies of God [AoG] OMC council member appointments, decisions, policy and missionary personnel issues.
DOI: 10.15468/dl.7takj7
title: Occurrence Download

description: A dataset containing 382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bacteria",
 "DecimalLatitude is greater than 38.6149496827533",
 "DecimalLatitude is less than 39.1567050422766",
 "DecimalLongitude is greater than -77.390486695585",
 "DecimalLongitude is less than -76.6976099271328"
 ]
}

 The dataset includes 382 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005362-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4gv8gy
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-79.40307 1.69915,-76.01005 1.89242,-76.3336 8.36344,-79.40307 8.23439,-79.40307 1.69915))",
 "TaxonKey is Cecropia obtusifolia Bertol."
 ]
}

 The dataset includes 91 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0141902-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bukgnw
title: Occurrence Download

description: A dataset containing 17131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Mahonia aquifolium (Pursh) Nutt."
 ]
}

 The dataset includes 17131 records from 250 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016789-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.