cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fbekbz
title: Occurrence Download

description: A dataset containing 5516 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Bowdichia virgilioides Kunth, Sebipira virgilioides (Kunth) A.Lyons, Bowdichia brevipes Benth., Bowdichia densiflora Benth., Bowdichia virgilioides var. glabrata Benth., Bowdichia virgilioides var. tomentosa Pilg., Bowdichia virgilioides f. villosa Yakovlev, Bowdichia floribunda Benth., Bowdichia pubescens Benth., Bowdichia parvifolia Gleason, Sebipira ferruginea Vogel, Sebipira major Mart., Bowdichia virgilioides var. major (Mart.) Benth., Bowdichia virgilioides f. major (Mart.) Yakovlev)"
 ]
}

 The dataset includes 5516 records from 213 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007416-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10626909
title: Processed Seurat objects from scRNA-seq data of the aging subventricular zone (SVZ) neurogenic niche with partial reprogramming

description: This repository contains the processed Seurat objects from the publication "Restoration of neuronal progenitors by partial reprogramming in the aged neurogenic niche" (https://doi.org/10.1038/s43587-024-00594-3).

Raw sequencing data is available at the Gene Expression Omnibus (GEO) under accession number GSE224438. Code used to process and analyze the data is available on GitHub (https://github.com/gitlucyxu/SVZreprogramming). 

These Seurat objects are filtered to high-quality singlets for samples included in the publication. Descriptions and notable metadata:



svz_iOSKM_cohort1_toshare.rds - SVZ after whole-body partial reprogramming, cohort 1



Celltype - cell type annotation

Treatment - condition



untr: old control

2Dox0: old+OSKM



hash.ID - mouse ID (biological replicate)



svz_iOSKM_cohort2_toshare.rds - SVZ after whole-body partial reprogramming, cohort 2



Celltype - cell type annotation

Age_Treatment - condition



young_untr: young control

old_untr: old control

old_2Dox0: old+OSKM



hash.ID - mouse ID (biological replicate)



svz_ciOSKM_toshare.rds - SVZ after SVZ-targeted partial reprogramming



Celltype - cell type annotation

Age_Treatment - condition



young_untr: young control

old_untr: old control

old_Dox: old+OSKM(SVZ)



MULTI_classification_rescued - mouse ID (biological replicate)




 

Updated 2024/07/01 (v2): replaced a corrupted file.
DOI: 10.5281/zenodo.10626910
title: Processed Seurat objects from scRNA-seq data of the aging subventricular zone (SVZ) neurogenic niche with partial reprogramming

description: This repository contains the processed Seurat objects from the publication "Restoration of neuronal progenitors by partial reprogramming in the aged neurogenic niche" (https://doi.org/10.1038/s43587-024-00594-3).

Raw sequencing data is available at the Gene Expression Omnibus (GEO) under accession number GSE224438. Code used to process and analyze the data is available on GitHub (https://github.com/gitlucyxu/SVZreprogramming). 

These Seurat objects are filtered to high-quality singlets for samples included in the publication. Descriptions and notable metadata:



svz_iOSKM_cohort1_toshare.rds - SVZ after whole-body partial reprogramming, cohort 1



Celltype - cell type annotation

Treatment - condition



untr: old control

2Dox0: old+OSKM



hash.ID - mouse ID (biological replicate)



svz_iOSKM_cohort2_toshare.rds - SVZ after whole-body partial reprogramming, cohort 2



Celltype - cell type annotation

Age_Treatment - condition



young_untr: young control

old_untr: old control

old_2Dox0: old+OSKM



hash.ID - mouse ID (biological replicate)



svz_ciOSKM_toshare.rds - SVZ after SVZ-targeted partial reprogramming



Celltype - cell type annotation

Age_Treatment - condition



young_untr: young control

old_untr: old control

old_Dox: old+OSKM(SVZ)



MULTI_classification_rescued - mouse ID (biological replicate)
DOI: 10.5281/zenodo.12613762
title: Processed Seurat objects from scRNA-seq data of the aging subventricular zone (SVZ) neurogenic niche with partial reprogramming

description: This repository contains the processed Seurat objects from the publication "Restoration of neuronal progenitors by partial reprogramming in the aged neurogenic niche" (https://doi.org/10.1038/s43587-024-00594-3).

Raw sequencing data is available at the Gene Expression Omnibus (GEO) under accession number GSE224438. Code used to process and analyze the data is available on GitHub (https://github.com/gitlucyxu/SVZreprogramming). 

These Seurat objects are filtered to high-quality singlets for samples included in the publication. Descriptions and notable metadata:



svz_iOSKM_cohort1_toshare.rds - SVZ after whole-body partial reprogramming, cohort 1



Celltype - cell type annotation

Treatment - condition



untr: old control

2Dox0: old+OSKM



hash.ID - mouse ID (biological replicate)



svz_iOSKM_cohort2_toshare.rds - SVZ after whole-body partial reprogramming, cohort 2



Celltype - cell type annotation

Age_Treatment - condition



young_untr: young control

old_untr: old control

old_2Dox0: old+OSKM



hash.ID - mouse ID (biological replicate)



svz_ciOSKM_toshare.rds - SVZ after SVZ-targeted partial reprogramming



Celltype - cell type annotation

Age_Treatment - condition



young_untr: young control

old_untr: old control

old_Dox: old+OSKM(SVZ)



MULTI_classification_rescued - mouse ID (biological replicate)




 

Updated 2024/07/01 (v2): replaced a corrupted file.
DOI: 10.15468/dl.njph6h
title: Occurrence Download

description: A dataset containing 4196 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Machaerium hirtum (Vell.) Stellfeld, Machaerium pilosum Benth., Nissolia hirta Vell., Machaerium acaciefolium Mart ex Benth., Machaerium affine Benth., Machaerium jacarandifolium Rusby, Machaerium bolivianum Gand., Machaerium glabratum Pittier, Machaerium glabripes Pittier, Machaerium rectipes Pittier)"
 ]
}

 The dataset includes 4196 records from 208 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007419-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.21685035
title: TREM2 R47H variant and risk for Alzheimer’s disease: assessment in a Greek population and updated meta-analysis

description: Rare coding variants in TREM2 and their association with the susceptibility towards Alzheimer’s disease (AD) were recently studied in various ethnic groups with contradictory results. The T allele of the rs75932628 (p.R47H variant) has shown a positive risk association with AD in several studies; however, neither a study in Greece nor an updated meta-analysis have been conducted. To assess the association between TREM2 rs75932628 and late-onset (sporadic) AD in a Greek population, and perform a meta-analysis of current data. The rs75932628 was genotyped in a total of 327 patients with AD and 700 cognitively healthy controls. A systematic search and meta-analyses of studies presenting data regarding rs75932628 in AD cases and controls were also performed. Three patients vs. none of the controls were found to carry the heterozygous risk allele of the rs75932628, yielding a significant association (<i>p</i> = 0.032), in the Greek sample. In the meta-analysis, the overall odds ratio (OR) under a fixed-effects model was 2.98 (Confidence Interval (CI):2.52–3.53) showing a significant association of the rs75932628-T allele with AD in the overall dataset, based on data from 27 studies (26200 AD cases and 142084controls). Caucasian population-only studies (<i>n</i> = 16) revealed a similar OR of 2.93 (CI:2.45–3.51), whereas Asian population-only studies (<i>n</i> = 5) had a non-significant OR of 0.84 (CI:0.19–3.74). The rs75932628 was associated with AD in the Greek sample. Our meta-analysis, covering a total population of over 168,000 people, also showed a significant association of the allele with AD in Caucasian populations.
DOI: 10.6084/m9.figshare.21685035.v1
title: TREM2 R47H variant and risk for Alzheimer’s disease: assessment in a Greek population and updated meta-analysis

description: Rare coding variants in TREM2 and their association with the susceptibility towards Alzheimer’s disease (AD) were recently studied in various ethnic groups with contradictory results. The T allele of the rs75932628 (p.R47H variant) has shown a positive risk association with AD in several studies; however, neither a study in Greece nor an updated meta-analysis have been conducted. To assess the association between TREM2 rs75932628 and late-onset (sporadic) AD in a Greek population, and perform a meta-analysis of current data. The rs75932628 was genotyped in a total of 327 patients with AD and 700 cognitively healthy controls. A systematic search and meta-analyses of studies presenting data regarding rs75932628 in AD cases and controls were also performed. Three patients vs. none of the controls were found to carry the heterozygous risk allele of the rs75932628, yielding a significant association (<i>p</i> = 0.032), in the Greek sample. In the meta-analysis, the overall odds ratio (OR) under a fixed-effects model was 2.98 (Confidence Interval (CI):2.52–3.53) showing a significant association of the rs75932628-T allele with AD in the overall dataset, based on data from 27 studies (26200 AD cases and 142084controls). Caucasian population-only studies (<i>n</i> = 16) revealed a similar OR of 2.93 (CI:2.45–3.51), whereas Asian population-only studies (<i>n</i> = 5) had a non-significant OR of 0.84 (CI:0.19–3.74). The rs75932628 was associated with AD in the Greek sample. Our meta-analysis, covering a total population of over 168,000 people, also showed a significant association of the allele with AD in Caucasian populations.
DOI: 10.6084/m9.figshare.26142709
title: Malaria Fanteakwa South_13012024.xlsx

description: Effects of artisanal mining activities on the <i>Plasmodium falciparum</i> load: the case of asymptomatic people in the Fanteakwa South district of Ghana
DOI: 10.5519/qd.i9yhz62p
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (203 records)
DOI: 10.15468/dl.56asct
title: Occurrence Download

description: A dataset containing 4220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Spheniscus humboldti Meyen, 1834"
 ]
}

 The dataset includes 4220 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007424-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12614013
title: Hydrated Electron PBEh(0.4) Calculations
DOI: 10.5281/zenodo.12614014
title: Hydrated Electron PBEh(0.4) Calculations
DOI: 10.34740/kaggle/dsv/8835911
title: extreme temperatures
DOI: 10.15468/dl.e4dntd
title: Occurrence Download

description: A dataset containing 1235 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Hymenaea martiana (Hayne) Hayne)"
 ]
}

 The dataset includes 1235 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007423-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.75y6p8
title: Occurrence Download

description: A dataset containing 293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Selenicereus undatus (Haw.) D.R.Hunt",
 "Year 1960-2024"
 ]
}

 The dataset includes 293 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007425-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wss9ew
title: Occurrence Download

description: A dataset containing 1181 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Vatairea macrocarpa (Benth.) Ducke, Tipuana amazonica Ducke, Tipuana macrocarpa (Benth.) Benth., Tipuana mucronata (Vogel) J.F.Macbr., Tipuana cinerascens (Benth.) Malme)"
 ]
}

 The dataset includes 1181 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007428-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3tx8bk
title: Occurrence Download

description: A dataset containing 324 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Bolivia (Plurinational State of)",
 "TaxonKey is Tabebuia Gomes"
 ]
}

 The dataset includes 324 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007429-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8euxvk
title: Occurrence Download

description: A dataset containing 841 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Sweetia fruticosa Spreng., Ferreirea spectabilis Allemão)"
 ]
}

 The dataset includes 841 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007431-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w2vfmx
title: Occurrence Download

description: A dataset containing 3264 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((92.72386 55.98445, 93.04914 55.98445, 93.04914 56.10511, 92.72386 56.10511, 92.72386 55.98445))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 3264 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044239-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27174948
title: <b>Global lake phytoplankton proliferation intensifies climate warming</b>

description: In lakes, phytoplankton sequester atmospheric carbon dioxide (CO<sub>2</sub>) and store it in the form of biomass organic carbon (OC); however, only a small fraction of this OC remains buried, while the remaining part is recycled to the atmosphere as CO<sub>2</sub> and methane (CH<sub>4</sub>). This has the potential effect of adding CO<sub>2</sub>-eq to the atmosphere and producing a warming effect due to the higher radiative forcing of CH<sub>4</sub> relative to CO<sub>2</sub>. In this study, we used globally collected data to quantify the CO<sub>2</sub>-eq feedback capacity of phytoplankton in global lakes by analyzing CO<sub>2</sub>-eq budget throughout the life cycle of phytoplankton, assess this feedback at a global scale, and predict the extent of this response under future warming scenarios.
DOI: 10.5519/qd.w5a5qxa7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (264 records)
DOI: 10.15468/dl.88y5ju
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Paulownia elongata S.Y.Hu"
 ]
}

 The dataset includes 96 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044241-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.vfjchi2f
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (24621 records)
DOI: 10.15468/dl.kp7n9g
title: Occurrence Download

description: A dataset containing 12311 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Andigena laminirostris Gould, 1851",
 "Year 2000-2024"
 ]
}

 The dataset includes 12311 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044242-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jvktr4
title: Occurrence Download

description: A dataset containing 11997 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Andigena laminirostris Gould, 1851",
 "Year 2000-2024"
 ]
}

 The dataset includes 11997 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044245-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23sxmn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((72.31061 33.74535, 72.4184 33.74535, 72.4184 33.81476, 72.31061 33.81476, 72.31061 33.74535))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044246-240906103802322/datasets/export for details.
DOI: 10.15468/dl.jr8nvg
title: Occurrence Download

description: A dataset containing 749 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rostroraja alba (Lacepède, 1803)"
 ]
}

 The dataset includes 749 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044247-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pumez2
title: Occurrence Download

description: A dataset containing 2503 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((92.76219 55.96436, 93.08497 55.96436, 93.08497 56.03471, 92.76219 56.03471, 92.76219 55.96436))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 2503 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044248-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bwwfjc
title: Occurrence Download

description: A dataset containing 867 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material citation, Material sample)",
 "DatasetKey is one of (KUBI Herpetology Collection, CAS Herpetology (HERP), LACM Vertebrate Collection, Anfibios y reptiles de las regiones 30 (Parque Natural Sierra Maderas del Carmen); 31 (Sierra El Burro-Río San Rodrigo); 36 (Sierra La Encantada); y 37 (Sierra El Pino), Coahuila, Anfibios y reptiles de las regiones 30 (Parque Natural Sierra Maderas del Carmen); 31 (Sierra El Burro-Río San Rodrigo); 36 (Sierra La Encantada); y 37 (Sierra El Pino), Coahuila, Digitalización y Sistematización de las Colecciones Biológicas Nacionales del Instituto de Biología, UNAM (vertebrados), University of Michigan Museum of Zoology, Division of Reptiles & Amphibians, UCM Amphibian and Reptile Collection (Arctos), Computarización de las colecciones de vertebrados terrestres de la Escuela Nacional de Ciencias Biológicas, IPN Fase 4 (Anfibios y reptiles), MVZ Herp Collection (Arctos))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is one of (ff90b050-c256-11db-b71b-b8a03c50a862, b554c320-0560-11d8-b851-b8a03c50a862, 66522820-055c-11d8-b84e-b8a03c50a862, 493fe050-055d-11d8-b84f-b8a03c50a862, 6ea87510-0561-11d8-b851-b8a03c50a862, 4cadac10-3e7b-11d9-8439-b8a03c50a862, 8edbbde0-055e-11d8-b850-b8a03c50a862)",
 "TaxonKey is Agalychnis dacnicolor (Cope, 1864)",
 "Year 1950-2024"
 ]
}

 The dataset includes 867 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044249-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27174962
title: Additional file 2 of Metaproteogenomics resolution of a high-CO2 aquifer community reveals a complex cellular adaptation of groundwater Gracilibacteria to a host-dependent lifestyle

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.27174962.v1
title: Additional file 2 of Metaproteogenomics resolution of a high-CO2 aquifer community reveals a complex cellular adaptation of groundwater Gracilibacteria to a host-dependent lifestyle

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.27174973
title: Additional file 1 of Enhancing microgrid energy management through solar power uncertainty mitigation using supervised machine learning

description: Additional file 1. supplementary material (data).
DOI: 10.6084/m9.figshare.27174973.v1
title: Additional file 1 of Enhancing microgrid energy management through solar power uncertainty mitigation using supervised machine learning

description: Additional file 1. supplementary material (data).
DOI: 10.6084/m9.figshare.27174977
title: Additional file 2 of Development of a new paradigm model for deciphering action mechanism of Danhong injection using a combination of isothermal shift assay and database interrogation

description: Additional file 2.
DOI: 10.6084/m9.figshare.27174977.v1
title: Additional file 2 of Development of a new paradigm model for deciphering action mechanism of Danhong injection using a combination of isothermal shift assay and database interrogation

description: Additional file 2.
DOI: 10.15468/dl.byy7jt
title: Occurrence Download

description: A dataset containing 934245 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-08-10",
 "EventDate is less than or equal to 2024-09-09",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 934245 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044235-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.7rvdnnnx
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (33672 records)