cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15454/op51sj
title: Sustainability performance of certified and non-certified food

description: This dataset contains: - 24 indicators of economic, environmental and social performance, estimated for 26 certified food value chains and their 26 conventional reference products. The indicators are estimated at different levels of the value chain: farm level, processing level and retail level; - the raw data based on which the indicators are estimated and its source; - the completed spreadsheet calculators for the following indicators: carbon footprint and foodmiles.
DOI: 10.15454/jigo8r
title: Dataset of chemical and Near-Infrared spectroscopy measurements of fresh and dried poultry and cattle manure

description: The dataset consists of 332 manure samples from poultry and cattle origin, sampled in farms located in major regions of livestock production in mainland France and Reunion Island. The samples were analysed for seven chemical properties following conventional laboratory methods : dry matter (DM), total ammonium nitrogen (NH4), total nitrogen (N), phosphorus (P2O5), calcium (CaO), magnesium (MgO) and potassium (K2O). Near-Infrared (NIR) spectra were acquired with three spectrometers on fresh homogenized and dried ground samples and standardized by PDS algorithm.
DOI: 10.15454/k5rt8j
title: Water temperature on the Scorff river (Morbihan - France)

description: The data consists of Scorff river water temperature collected for the Environmental Research Observatory (ERO) on Diadromous Fish in Coastal rivers (DiaPFC). ORE DiaPFC is a research infrastructure focused on studying the evolution of diadromous fish populations under the influence of human-induced and environmental changes (mainly agriculture and climate). Sampling is conducted at 5 sites spread along the mainstem, one since 1995 and others since 2005 and later. Scorff River: Latitude ranges from 47.7718 to 48.1682; longitude ranges from -3.2497 to -3.3404 and elevation range from 0 and 144 metres. The Scorff River is a small coastal river in southern Brittany (France). The main river is 78.6km long, including a 15km estuary. The mean gradient is 3.6%, annual mean discharge is 5m3/s and the drainage basin area has an area of 480km2. Agriculture is the main human activity and land use, with several areas of moors and forests.
DOI: 10.15454/lapnht
title: SEASON : System for Evaluation of Agriculture faiSability using indicatOrs combiNation

description: SEASON (System for Evaluation of Agriculture faiSability using indicatOrs combiNation) est une chaîne de calculs d'indicateurs agro-climatiques et éco-climatiques utilisant des jeux de données climatiques maillées, des données de propriétés de sol pour chaque maille, des paramètres variétaux et la bibliothèque d'indicateurs et de modèles phénologiques de GETARI. Cette application est portée par l’unité de service AgroClim.
DOI: 10.15454/nvukqu
title: MeatPartTool project: Final report

description: This report is the final report of the project MeatPartTool. This report gives some methodological issues on LCA applied to meat-products, and explains the major hypothesis to calculate the allocation factors. The software, the database and the major results are described
DOI: 10.15454/hxwl92
title: RPG complété 2018 département 03

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 03. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/jtve46
title: French SOERE soil monitoring dataset with related management practices data

description: This dataset corresponds to a datamart produced by the WP2 team of the Landmark H2020 project. The SOERE PRO is a French research observatory on organic residues recycling in agriculture. It is a network of long-term field experiments, including QualiAgro and PROspective devices, which has been created to evaluate benefits and risks associated with organic residue (OR) application in agriculture. It has been certified as SOERE PRO (a network of long-term experiments dedicated to the study of impacts of organic waste product recycling) in 2011 and 2015 by ALLENVI (Alliance Nationale de Recherche pour l'Environnement). Since 2014, it has also been integrated as a service of the ‘‘Investment for future’’ infrastructure AnaEE-France, overseen by the French National Research Agency (ANR-11-INBS-0001). In 2018, it has been certified as Collective Scientific Infrastructure by the INRA (National Institute for Agricultural Research). QualiAgro which has been initiated in 1998 is located in the Paris Bassin. The objectives are to characterize the agronomic value of composts from the urban origin and their environmental impacts. The field experimental design is a complete randomized block experiment with 450 m² plots and four replicates of five organic treatments: three urban composts (municipal solid waste, MSW; green waste and sludge, GWS; biowaste, BIOW), farmyard manure as organic control treatment (FYM) and a control without organic inputs (CN). QualiAgro data included in the H2020 Landmark project were the physico-chemical properties of soils sampled in 2015, field management practices and yields for the period 2010-2015. PROspective which has been initiated in 2000 is located in Colmar (Est of France). The objectives are to characterize the agronomic value of composts and the environmental impacts of 3 different types of ORs frequently amended in Est of France and to highlight the composting effect on these impacts. PROspective data included in the H2020 Landmark project were the physico-chemical properties of soils sampled in 2018, field management practices and yields for the period 2014-2018. 2 tables provided by France are available: One table of fact-gathering the results of the chemical and physical analyses of the soil profiles and monitoring. One table of fact-gathering the results of the cultural management practices related to soil data. Both tables are connected with the same id attribute. To link soil data to management practices, you just need to use the "profile_id" of the soil table and the "management_id" of the management table. For soil data, the same id may come more than one time if multiple layers are described. Moreover, the names of the crops have been coded into the management table with the "Eurostat Handbook for Annual Crop Statistics (Regulation (EC) No 543/2009, Commission Delegated Regulation (EU) 2015/1557 and ESS agreement for Annual Crop Statistics) - Revision 2017 - (Released 9 February 2017)". All the codes and their meaning are into the table "eurostat_crops_list".
DOI: 10.15454/lbpyln
title: Dynamics of main stand characteristics (N, Cg) of an oak and a beech spacing and thinning trials at an early development stage, in view to modeling oak and beech “size-density” trajectories.

description: The two datasets (oak.tab and beech.tab) were obtained from an experimental plantation established in the spring of 1981 in the Lyons-la-Forêt National Forest in northwestern France (49°28’19”N, 1°33’52”E) and followed until 2017. These datasets obtained from regular inventories of tree girths of live trees allowed studying the size-density trajectories (1) of pure even-aged unthinned experimental sessile oak and beech stands, from an early development stage. The oak stand data (oak.tab) cover a range of initial densities from 994 to 135555 trees per hectare and a range of ages from 6 to 38. The beech stand data (beech.tab) cover a range of initial densities from 472 to 38000 trees per hectare and a range of ages from 12 to 39. The following data appear in each dataset: plot (plot number); origin (planted or sowed); block (randomized complete block design); replication (partially replicated treatments within blocks); planting density or sowing density (theoretical initial density: trees ha-1); treatment («density treatments»: plots with comparable actual initial densities were grouped together); actual initial density (number of live seedlings per hectare after transplant shock: trees ha-1); thinning-modality (some of the planted plots were thinned one time); thinning-period (before-thinning: part of stand density trajectory used in the modelisation process); plot area (hectare); year (time of survey); age (tree age); Cg (quadratic mean girth in cm); N (number of live trees per hectare). For more explanation about these data, one may refer to the section “Materials and Methods” of the following papers: Ningre, F., Ottorini, J.-M., Le Goff, N. (2016a) Modelling size-density trajectories for even-aged beech (Fagus sylvatica L.) stands in France. Ann For Sci 73:765-776. Ningre, F., Ottorini, J.-M., Le Goff, N. Size-density trajectories for even-aged sessile oak (Quercus petraea (Matt.) Liebl.) and common beech (Fagus sylvatica L.) stands revealing similarities and differences in the mortality process. under review (1) Quadratic mean girth (Cg) in relation with the number of live trees per hectare (N) in log-log scale.
DOI: 10.15454/lxkfas
title: Spectra transfer model of NIR spectra of soil samples.

description: This dataset presents near infrared spectra of different soils samples acquired on two different spectrometers in two different labs. A first set of soil spectra (BIPEA soils from LAS), was used to compute one spectra transfer model thanks to the Piecewise Direct Standardization function (PDS). A second set of soil spectra,Plaine_de_Versailles soils, independant to the first one, was used to validate the transfer model. (2021-04-09).
DOI: 10.15454/mk1jiw
title: Sugar beet sequencing data (RNAseq)

description: RNAseq on ribodepleted total RNAs from sugar beet. Run named PROVIBE1.
DOI: 10.15454/mygfyx
title: Characterization of the Sodium Binding State in Several Food Products by 23Na NMR Spectroscopy

description: This dataset contains the raw data published in Magnetic Resonance in Chemistry as a special issue rapid communication. In food, salt has several key roles including conservative and food perception. For this latter, it is well known that the interaction of sodium with the food matrix modifies the consumer perception. It is then critical to characterize these interactions in various real foods. For this purpose, we exploited the information obtained on both single and double quantum 23Na NMR spectroscopies. All salted food samples studied showed strong interactions with the food matrix leading to quadrupolar interactions. However, for some of them, the single quantum analysis did not match the theoretical prediction. This was explained by the presence of another type of sodium population, which did not produce quadrupolar interactions. This finding is of critical importance to perform quantitative magnetic resonance imaging (MRI) and to understand the consumer salty taste perception.
DOI: 10.15454/krpei2
title: PulseFoodInnovation

description: This dataset consists in a list of food product innovations containing pulses extracted from the MINTEL GNPD Database (validated by a partnership agreement). Dataset comes as a simple csv file, encoded in utf-8 of 20,724 lines. For each food product innovation, the following information are provided: barcode of the product, date of publication, country of trade, ingredients list as indicated on the product packaging, the parsed ingredients list under the form of an ingredient dictionary.
DOI: 10.15454/mlmdve
title: Microsatellite genotyping of French populations of the carrot cyst nematode Heterodera carotae

description: The dataset include two files containing the genotypic data (Genepop format) for the different Heterodera carotae populations sampled at the plant scale (H_carotae_plants.txt) and at the field scale (H_carotae_fields.txt).
DOI: 10.15454/l239b5
title: RPG complété 2018 département 87

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 87. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/l3jm22
title: Polygenic adaptation and negative selection across traits, years and environments in a long-lived plant species (Pinus pinaster Ait., Pinaceae)

description: Raw phenotypes and BLUPs of the CLONAPIN common garden network
DOI: 10.15454/lzcmkq
title: Background data for a techno-economic assessment and a life cycle assessment of two polyphenol extraction methods, solvent extraction (SE) and pressurized liquid extraction (PLE)

description: The data set present the background for a techno-economic assessment and a life cycle assessment of two polyphenol extraction methods, solvent extraction (SE) and pressurized liquid extraction (PLE). The aim was to determine the environmental and economic performance of emerging processes for the valorization of red wine pomace at an early design stage.
DOI: 10.15454/nm3wet
title: Consumer perception data about food packaging functionalities for fresh strawberries - Plastic not closed consumers’ arguments
DOI: 10.15468/dl.ktpt5s
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasCoordinate is TRUE",
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON ((-131.0291726744563 55.75001651047529, -131.35507062164845 55.764109906804464, -131.40595028446694 55.629704985383555, -130.97549359088381 55.517215790493424, -130.9426699727766 55.656696567143065, -131.0291726744563 55.75001651047529))"
 ]
}

 The dataset includes 48 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035111-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15454/jep6x0
title: Water temperature of the Bourbel flooded gravel pit (Seine-Maritime county - France)

description: The data consists in water temperatures from 1999 to 2003 from the flooded gravel pit of Bourbel (Normandy). This gravel pit lies within the Bresle valley, resting on sandy and limestone alluviums. It was collected for the Environmental Research Observatory (ORE) on Diadromous Fish in Coastal rivers (DiaPFC). ORE DiaPFC is a research infrastructure focused on studying the influence of human-induced and environmental changes (mainly agriculture and climate).
DOI: 10.15454/mymbqu
title: RPG complété 2019 département 25

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 25. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/nkcd4b
title: Phenology Data - INRAE St-Martin-de-Hinx - UE 394 SMH Maïs - BDD PHETEC

description: Ce modèle est défini pour la base de données PHETEC – Grandes cultures. Données d'observation de la phénologie de plusieurs cultures (Maïs) observées par l'Unité Expérimentale 394 Maïs de St-Martin-De-Hinx entre les années 1989 et 2008. Les données sont issues des parcelles qui n'ont pas été utilisés pour des expérimentations. Elles sont issus de la base de données Phetec et sont accessibles via le Portal de données TEMPO (https://tempo.pheno.fr/) Le fichier est composé de plusieurs feuilles. Les données de phénologie ont plusieurs métadonnées associées pour aider à leur compréhension.
DOI: 10.15454/pfv9jk
title: Genetics and Grain-Legumes WoS DataSet 1980-2018

description: The text file corresponds to the search query capturing the main genetics research theme on grain-legumes (both soya and pulses, see Species Grain-Legumes WoS dataset) to be applied on the WoS (Web of Knowledge). This search query is restricted to the main types of scientific literature documents, namely the types: article, book, book chapter, and review. This translated into the query DT = ("Article" OR "Book" OR "Book Chapter" OR "Review"); the time range selected is 1980-2018 (PY = "1980-2018"). Genetics theme refers to various varieties, genes, breeding methods and objectives. UT file corresponds to the results of this search query (UT refers to a WoS unique identifier for each record retrieved) after a post-processing step which eliminated the records captured by the Wos KeyWord Plus : ie, the UT file correspond to records containing terms of the search query only in title, abstract, and (regular) keywords. See the related publication for more information.
DOI: 10.15454/ptxlhe
title: Biological and physico-chemical dataset from different freshwater fishponds systems in IMTA

description: The data were collected from experimental freshwater fishpond systems (semi-intensive coupled with lagoon, semi-intensive and extensive). The dataset presented is composed of: 1. Individual fish parameters (live weight, length at fork, Fulton’s condition factor (K)), at stocking and harvest for the three species reared: common carp (Cyprinus carpio), roach (Rutilus rutilus) and perch (Perca Fluviatilis), within each fishpond. 2. Overall fish performances measured in group (total live weight, number of individuals, mean live weight), at stocking and harvest, for the three species reared: common carp (Cyprinus carpio), roach (Rutilus rutilus) and perch (Perca Fluviatilis), within each fishpond 3. Physical indicators of the water quality in fishponds, weekly measured: temperature, pH, dissolved oxygen, oxygen saturation, conductivity and water transparency 4. Physical indicators of the water quality in fishponds, measured every 5 minutes on 24h once a month from May to October: temperature, pH, oxydo-reduction potential, conductivity, dissolved oxygen and oxygen saturation. 5. Concentration in pond water of chemical compounds, monthly sampled: total nitrogen (TN), ammonium, nitrite, nitrate, orthophosphate and total phosphorus(TP) 6. Concentration in pond water of chemical compounds, sampled twice on a lap time of 24h, monthly: total nitrogen (TN), ammonium, nitrite, nitrate, orthophosphate and total phosphorus(TP) 7. Concentration of chlorophyll in pond water monthly sampled: chlorophyll-a from May to October and total chlorophyll, blue chlorophyll, brown chlorophyll and green chlorophyll from May to November. 8. Concentration in TN, TC and TP in the sediment of each pond at fish stocking and harvest.
DOI: 10.15454/mb4g3t
title: Phenomic selection, Rincent et al.

description: This dataset supports the study of Rincent et al. (2018) about phenomic and genomic selections. It includes genotypes, NIRS, and phenotypes of the poplar and winter wheat panels.
DOI: 10.15454/mrk0z4
title: Characterization of iron-pectin beads as a novel system for iron delivery to intestinal cells.

description: This dataset concerns the physiochemical characterization of iron-pectin beads, as a novel system for iron delivery to intestinal cells. The study covers the behavior of the beads at the different pH of the gastrointestinal tract and their ability to release bioavailable iron in the intestine for its absorption.
DOI: 10.15454/q6ppxy
title: Environmental conditions modulate the protein content and immunomodulatory activity of extracellular vesicles produced by the probiotic Propionibacterium freudenreichii CIRM-BIA129

description: Propionibacterium freudenreichii is a probiotic Gram-positive bacterium with promising immunomodulatory properties. It modulates regulatory cytokines, mitigates the inflammatory response in vitro and in vivo. These properties were initially attributed to specific bacterial surface proteins. Recently, we showed that extracellular vesicles (EVs) produced by P. freudenreichii CIRM-BIA129 mimic the immunomodulatory features of parent cells in vitro (i.e. modulating NF-κB transcription factor activity and IL-8 release) which underlies the role of EVs as mediators of the probiotic effects of the bacterium. The modulation of EV properties, and particularly of those with potential therapeutic applications such as the EVs produced by the probiotic P. freudenreichii, is one of the challenges in the field to achieve efficient yields with the desired optimal functionality. Here we evaluated whether the culture medium in which the bacteria are grown could be used as a lever to modulate the protein content and hence the properties of P. freudenreichii CIRM-BIA129 EVs. The physical, biochemical and functional properties of EVs produced from cells cultivated on laboratory Yeast Extract Lactate (YEL) medium and cow milk ultrafiltrate (UF) medium were compared. UF-derived EVs were more abundant, smaller in diameter and displayed more intense anti-inflammatory activity than YEL-derived EVs. Furthermore, the growth media modulated EV content in terms of both the identities and abundances of their protein cargos, suggesting different patterns of interaction with the host. Proteins involved in amino acid metabolism and central carbon metabolism were modulated, as were the key surface proteins mediating host-propionibacteria interactions.Proteomics characterization of EVs protein content was carried out on a Qexactive coupled to NanoLiquid Chromatography.
DOI: 10.15454/rlynzv
title: RPG complété 2019 département 29

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 29. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.