cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3640946_d10.v1
title: Additional file 8: Table S5. of Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion

description: Is a table listing the down-regulated genes in SZ. (XLS 127Â kb)
DOI: 10.6084/m9.figshare.c.3640946_d8.v1
title: Additional file 1: Table S1. of Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion

description: Is a table listing the patients and controls used in this study. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.c.3640946_d6.v1
title: Additional file 5: Table S2. of Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion

description: Is a table listing summary statistics of RNA-seq. (XLSX 11Â kb)
DOI: 10.15468/dl.zk3hxh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Serranus filamentosus Valenciennes, 1830",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035616-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3640820_d4.v1
title: Additional file 1: Table S1. of Prior infection with Type A Francisella tularensis antagonizes the pulmonary transcriptional response to an aerosolized Toll-like receptor 4 agonist

description: LPS-responsive genes not suppressed by FT SchuS4. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3640820_d3.v1
title: Additional file 2: Table S2. of Prior infection with Type A Francisella tularensis antagonizes the pulmonary transcriptional response to an aerosolized Toll-like receptor 4 agonist

description: LPS-responsive genes partially suppressed by FT SchuS4. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3640814_d4.v1
title: Additional file 4: of A shortened verbal autopsy instrument for use in routine mortality surveillance systems

description: Sensitivity by cause for each module in full and shortened PHMRC VAI. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3640739_d1.v1
title: Additional file 8: Table S7. of Inter-tissue coexpression network analysis reveals DPP4 as an important gene in heart to blood communication

description: A list of genes whose expression in whole blood significantly correlated with cardiac DPP4 expression. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3640694_d9.v1
title: Additional file 5: of Transcriptomic analysis reveals the gene expression profile that specifically responds to IBA during adventitious rooting in mung bean seedlings

description: Top up- and down regulated DEGs in the sample treated with IBA for 24Â h. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3640694_d6.v1
title: Additional file 6: of Transcriptomic analysis reveals the gene expression profile that specifically responds to IBA during adventitious rooting in mung bean seedlings

description: Top up- and down regulated DEGs in IBA24 versus IBA6. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3640694_d7.v1
title: Additional file 7: of Transcriptomic analysis reveals the gene expression profile that specifically responds to IBA during adventitious rooting in mung bean seedlings

description: Top significantly up- and down- regulated DEGs involved in plant hormone signaling between the samples. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3640694_d5.v1
title: Additional file 4: of Transcriptomic analysis reveals the gene expression profile that specifically responds to IBA during adventitious rooting in mung bean seedlings

description: Top up- and down regulated DEGs in the sample treated with IBA for 6Â h. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3640694_d4.v1
title: Additional file 8: of Transcriptomic analysis reveals the gene expression profile that specifically responds to IBA during adventitious rooting in mung bean seedlings

description: Top most differentially expressed transcription factor (TF) coding genes between the samples. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3640694_d3.v1
title: Additional file 2: of Transcriptomic analysis reveals the gene expression profile that specifically responds to IBA during adventitious rooting in mung bean seedlings

description: Top list of significantly up- and down-regulated GOs. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3640694_d1.v1
title: Additional file 3: of Transcriptomic analysis reveals the gene expression profile that specifically responds to IBA during adventitious rooting in mung bean seedlings

description: Top list of significantly up- and down-regulated KOs. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3640619_d17.v1
title: Additional file 9: of Multi-label multi-instance transfer learning for simultaneous reconstruction and cross-talk modeling of multiple human signaling pathways

description: Text file contains the predicted cross-talk signaling components between human signaling pathways (target instance). (ZIP 4 KB)
DOI: 10.15468/dl.5sh593
title: Occurrence Download

description: A dataset containing 19620 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calonectris leucomelas (Temminck, 1836)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 19620 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035617-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3640619_d16.v1
title: Additional file 10: of Multi-label multi-instance transfer learning for simultaneous reconstruction and cross-talk modeling of multiple human signaling pathways

description: Text file contains the predicted cross-talk signaling components between human signaling pathways (homolog instance). (ZIP 36 KB)
DOI: 10.6084/m9.figshare.c.3640619_d14.v1
title: Additional file 2: of Multi-label multi-instance transfer learning for simultaneous reconstruction and cross-talk modeling of multiple human signaling pathways

description: Text file contains the predicted signaling components for each human signaling pathway (target instance). (ZIP 37 KB)
DOI: 10.6084/m9.figshare.c.3640619_d13.v1
title: Additional file 16: of Multi-label multi-instance transfer learning for simultaneous reconstruction and cross-talk modeling of multiple human signaling pathways

description: Text file contains the GO enrichment analysis of the predicted signaling components (molecular functions). (ZIP 143 KB)
DOI: 10.6084/m9.figshare.c.3640619_d11.v1
title: Additional file 15: of Multi-label multi-instance transfer learning for simultaneous reconstruction and cross-talk modeling of multiple human signaling pathways

description: Text file contains the GO enrichment analysis of the predicted signaling components (biological processes). (ZIP 702 KB)
DOI: 10.6084/m9.figshare.c.3640619_d12.v1
title: Additional file 13: of Multi-label multi-instance transfer learning for simultaneous reconstruction and cross-talk modeling of multiple human signaling pathways

description: Text file contains the derived cross-talk signaling PPIs between human signaling pathways (homolog instance). (ZIP 23 KB)
DOI: 10.6084/m9.figshare.c.3640505_d1.v1
title: Additional file 2: of Physical activity and sedentary behavior can modulate the effect of the PNPLA3 variant on childhood NAFLD: a case-control study in a Chinese population

description: Dataset of NAFLD status, rs738409 genotype and physical/sedentary behavior. Description of the dataset: In this dataset, each row represents a case and each column represents a variable. This dataset includes 7 variables: (a) NAFLD status (‘1’ = ‘NAFLD’, ‘0’ = ‘non-NAFLD’); (b) rs738409 genotype (‘0’ = ‘CC’, ‘1’ = ‘GC’, ‘2’ = ‘GG’); (c) gender (‘1’ = ‘male’, ‘2’ = ‘female’); (d) age (years); (e) BMI (kg/m2); (f) physical activity (‘0’ = ‘physical activity ≥ 1 h/day’, ‘1’ = ‘physical activity
DOI: 10.6084/m9.figshare.c.3640469_d4.v1
title: Additional file 3: Table S2. of Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

description: Codon adaptation index (CAI) analysis of MARV coding sequences. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3639977_d8.v1
title: MOESM2 of Insights into long noncoding RNAs of naked mole rat (Heterocephalus glaber) and their potential association with cancer resistance

description: Additional file 2: Table S2. Expression levels of NMR lncRNAs among different tissues.
DOI: 10.6084/m9.figshare.c.3639977_d7.v1
title: MOESM9 of Insights into long noncoding RNAs of naked mole rat (Heterocephalus glaber) and their potential association with cancer resistance

description: Additional file 9: Table S8. List of NMR lncRNAs that intensively coexpressed with PTSGs-NMR.
DOI: 10.6084/m9.figshare.c.3639977_d5.v1
title: MOESM12 of Insights into long noncoding RNAs of naked mole rat (Heterocephalus glaber) and their potential association with cancer resistance

description: Additional file 12: Table S11. List of rat lncRNAs that strongly coexpressed with four HA-related genes.
DOI: 10.6084/m9.figshare.c.3639977_d6.v1
title: MOESM8 of Insights into long noncoding RNAs of naked mole rat (Heterocephalus glaber) and their potential association with cancer resistance

description: Additional file 8: Table S7. List of potential tumor-suppressor genes of NMR genome (PTSGs-NMR).
DOI: 10.6084/m9.figshare.c.3639977_d4.v1
title: MOESM7 of Insights into long noncoding RNAs of naked mole rat (Heterocephalus glaber) and their potential association with cancer resistance

description: Additional file 7: Table S6. Functional enrichment of PCGs that intensively coexpressed with five NMR-HCRLs.
DOI: 10.15468/dl.zq4wcu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Procellaria leucomelas Temminck, 1836",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035618-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3639977_d2.v1
title: MOESM4 of Insights into long noncoding RNAs of naked mole rat (Heterocephalus glaber) and their potential association with cancer resistance

description: Additional file 4: Table S3. Differential expressed lncRNAs identified in naked mole rat (Heterocephalus glaber) genome.
DOI: 10.6084/m9.figshare.c.3639977_d1.v1
title: MOESM6 of Insights into long noncoding RNAs of naked mole rat (Heterocephalus glaber) and their potential association with cancer resistance

description: Additional file 6: Table S5. List of NMR lncRNAs that intensively coexpressed with five NMR-HCRLs.
DOI: 10.6084/m9.figshare.c.3639905_d1.v1
title: MOESM1 of Immunotoxicity assessment of CdSe/ZnS quantum dots in macrophages, lymphocytes and BALB/c mice

description: Additional file 1. Results from flow cytometry analysis of QDs uptake, ICP-MS analysis of Se element in major organs, the phagocytic assay of peritoneal macrophages, and MTT assay of macrophages treated with different types of QDs are presented.
DOI: 10.6084/m9.figshare.c.3639893_d2.v1
title: Additional file 2: of Psychoactive pharmaceuticals at environmental concentrations induce in vitro gene expression associated with neurological disorders

description: Complete data of gene sets analyzed. Excel file containing a complete data of all gene sets (neuronal development, growth, regulation; neurological disorders and ASD group) that were enriched (up- and down-regulated) in mixture (carbamazepine, fluoxetine and venlafaxine) and valproate treatments. We also reported P- values and Q-values for individual gene sets. (XLSX 1621 kb)
DOI: 10.6084/m9.figshare.c.3639839_d1.v1
title: Additional file 1: of Direct stacking of sequence-specific nuclease-induced mutations to produce high oleic and low linolenic soybean oil

description: GC FAME data contains the raw GC FAME data used to generate the graph in Fig.Â 3. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3639572_d1.v1
title: Additional file 1: Figure S1a. of Designing and implementing a socioeconomic intervention to enhance TB control: operational evidence from the CRESIPT project in Peru

description: Details of the operational conditions to meet in order to receive double incentives. b: Details of the operational conditions to meet in order to receive simple incentives. (ZIP 492 kb)
DOI: 10.15468/dl.74bjak
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malakichthys griseus Döderlein, 1883",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 70 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035619-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3639428_d4.v1
title: Additional file 11: Table S1. of Comparative analyses of CTCF and BORIS occupancies uncover two distinct classes of CTCF binding genomic regions

description: Pathways altered with BORIS downregulation in K562 cells. Table S2 Functional annotation of genes that changed transcription upon BORIS downregulation in K562 cells. Table S3 The top diseases and functions enriched for the genes that changed transcription upon BORIS downregulation in K562 cells. Table S4 Pathways altered with BORIS induction in MCF7 cells. Table S5 Functional annotation of genes that changed transcription upon BORIS induction in MCF7 cells (Clone1). Table S6 The top diseases and functions enriched for the genes that changed transcription upon BORIS induction in MCF7 cells (Clone1). Table S7 Comparison of functional annotation of genes that changed transcription upon BORIS depletion (K562) and BORIS induction (MCF7, Clone1). Table S8 Comparison of canonical pathways that altered upon BORIS depletion (K562) and BORIS induction (MCF7, Clone1). (XLSX 257Â kb)
DOI: 10.6084/m9.figshare.c.3639413_d1.v1
title: Additional file 1 of The systems biology format converter

description: SBFC Web Services usage example. The file UsageExample.java presents some code using several methods of the SBFCWebServiceClient class to perform some conversions, retrieve the results and save them to local files. (JAVA 5 kb)
DOI: 10.6084/m9.figshare.c.3638939_d7.v1
title: Additional file 4: Table S6. of A comprehensive evaluation of interaction between genetic variants and use of menopausal hormone therapy on mammographic density

description: a Beta estimates for interaction between single nucleotide polymorphisms (SNPs) and use of hormone replacement therapy (MHT) on percent density and for association between SNP and percent density. b beta estimates for interaction between SNPs and use of MHT on dense area (cm2) and for association between SNPs and dense area (cm2). c beta estimates for interaction between SNPs and use of MHT on non-dense area (cm2) and for association between SNPs and non-dense area (cm2). (ZIP 2747 kb)
DOI: 10.15468/dl.kad7gf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malakichthys similis Yamanoue & Matsuura, 2004",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035620-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3638753_d12.v1
title: Additional file 7: Table S3. of Global analysis of DNA methylation in hepatocellular carcinoma by a liquid hybridization capture-based bisulfite sequencing approach

description: Summary of 77 genes containing DMRs across at least 6 pairs of HCCs and non-tumors by LHC-BS.
DOI: 10.6084/m9.figshare.c.3638753_d10.v1
title: Additional file 8: Table S4. of Global analysis of DNA methylation in hepatocellular carcinoma by a liquid hybridization capture-based bisulfite sequencing approach

description: Summary of 93 DEGs shared by at least 6 paired HCC tissues.
DOI: 10.6084/m9.figshare.c.3638753_d9.v1
title: Additional file 1: Table S1. of Global analysis of DNA methylation in hepatocellular carcinoma by a liquid hybridization capture-based bisulfite sequencing approach

description: Clinicopathology features of patients with HCC studied for genome-wide promoter methylation analysis.
DOI: 10.6084/m9.figshare.c.3638753_d8.v1
title: Additional file 9: Table S5. of Global analysis of DNA methylation in hepatocellular carcinoma by a liquid hybridization capture-based bisulfite sequencing approach

description: Summary of 20 genes showing negative correlation between methylation and gene expression in at least 5 out of 8 pairs of samples.
DOI: 10.6084/m9.figshare.c.3638753_d5.v1
title: Additional file 12: TableS8. of Global analysis of DNA methylation in hepatocellular carcinoma by a liquid hybridization capture-based bisulfite sequencing approach

description: Coverage and methylation levels of 12 genes validated by MiSeq-BSP.
DOI: 10.6084/m9.figshare.c.3638753_d6.v1
title: Additional file 2: Table S2. of Global analysis of DNA methylation in hepatocellular carcinoma by a liquid hybridization capture-based bisulfite sequencing approach

description: Data generation for LHC-BS and RNA-Seq.
DOI: 10.6084/m9.figshare.c.3638753_d2.v1
title: Additional file 11: Table S7. of Global analysis of DNA methylation in hepatocellular carcinoma by a liquid hybridization capture-based bisulfite sequencing approach

description: Primer sequences for MiSeq-BSP and RT-PCR validation.
DOI: 10.6084/m9.figshare.c.3638753_d3.v1
title: Additional file 10: Table S6. of Global analysis of DNA methylation in hepatocellular carcinoma by a liquid hybridization capture-based bisulfite sequencing approach

description: Clinicopathological features of 78 Chinese HCC patients studied for validation of gene expression.
DOI: 10.57841/casdc.0004238
title: 小麦TabHLH27分子调控网络论文及数据集
DOI: 10.6084/m9.figshare.c.3638651_d9.v1
title: Additional file 4: Table S8. of Seminal fluid protein genes of the brown planthopper, Nilaparvata lugens

description: Proteins only detected in MAG samples possessing a signal peptide. We analyzed the signal peptide of the proteins that were only detected from MAG samples. We identified 14 proteins with signal peptides, and their information, including their sequences, is provided in this file. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3638651_d7.v1
title: Additional file 3: Table S3. of Seminal fluid protein genes of the brown planthopper, Nilaparvata lugens

description: Statistics of function groups. This file gives a statistics analysis of the detected proteins of each function groups, as described in Methods. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3638651_d8.v1
title: Additional file 1: Table S1. of Seminal fluid protein genes of the brown planthopper, Nilaparvata lugens

description: Primers used in this artical. This file lists the sequences of the primers used in the RT-qPCR analysis, as described in Methods. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3638225_d8.v1
title: MOESM3 of Transcriptomic analysis of the host response to an iridovirus infection in Chinese giant salamander, Andrias davidianus

description: Additional file 3. Differentially expressed genes specific for uninfected Chinese giant salamander (A) and GSIV-infected Chinese giant salamander (B). The table provided a comprehensive list of differentially expressed genes specific for uninfected Chinese giant salamander (GS_CS) and GSIV-infected Chinese giant salamander (GS_TS) at estimated absolute log2-fold change of â Ľ1 and FDR â ¤â  0.05. A total of 102 down-regulated genes were detected only in the GS_CS samples (A), and 67 up-regulated genes specific for the GS_TS samples (B).
DOI: 10.6084/m9.figshare.c.3638225_d5.v1
title: MOESM2 of Transcriptomic analysis of the host response to an iridovirus infection in Chinese giant salamander, Andrias davidianus

description: Additional file 2. KEGG summary of Chinese giant salamander isogenes. A total of 23 712 isogenes were assigned to 317 KEGG pathways. For each pathway, the pathway definition, number of sequences and isogene ID were listed in the table.
DOI: 10.6084/m9.figshare.c.3638225_d3.v1
title: MOESM9 of Transcriptomic analysis of the host response to an iridovirus infection in Chinese giant salamander, Andrias davidianus

description: Additional file 9. A list of SNPs related to the RIG-I-like receptor signaling pathway (A) and the Toll-like receptor signaling pathway (B). 272 and 442 SNPs related to the RIG-I-like receptor and the Toll-like receptor signaling pathways, respectively, were listed in this additional file. The identical bases with reference sequences were indicated with â  â  â  .
DOI: 10.15468/dl.ctm8zw
title: Occurrence Download

description: A dataset containing 167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudorca crassidens (Owen, 1846)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 167 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035621-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3638156_d8.v1
title: Additional file 1: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

description: Genetic linkage map of an intraspecific RIL population. (ZIP 7480 kb)
DOI: 10.6084/m9.figshare.c.3638156_d6.v1
title: Additional file 5: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

description: Summary of meta-clusters on a consensus map. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3638156_d4.v1
title: Additional file 8: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

description: Details of the primers used in the study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3638156_d5.v1
title: Additional file 3: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

description: Position and markers details of identified QTLs for fiber quality traits in an intraspecific RIL. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3638156_d3.v1
title: Additional file 4: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

description: Details of QTL clusters on the 0â  153 genetic map of a RIL. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3638156_d1.v1
title: Additional file 6: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

description: Identified QTLs for fiber traits in a RIL and comparison with the findings of previous reports. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3638156_d2.v1
title: Additional file 2: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

description: Fiber QTLs identified in an intraspecific RIL population and their position. (XLSX 39 kb)