cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26840350
title: Supplementary Material for: Intestinal ultrasonography diagnostic performance and feasibility in IBD during pregnancy: a systematic review and narrative synthesis.

description: Introduction: Inflammatory bowel diseases (IBD), including Crohn’s disease (CD) and ulcerative colitis (UC) are associated to poor maternal and foetal outcomes during pregnancy, requiring a strict monitoring of the disease activity, preferably with non-invasive modalities. There are numerous data confirming intestinal ultrasonography (IUS) accuracy and efficacy for the detection of IBD disease activity and complications, but data in pregnant IBD patients are scarce. We aimed to evaluate the diagnostic performance and feasibility of IUS to monitor IBD activity throughout pregnancy.

Methods: A systematic literature review has been performed identifying studies the use of ultrasound modality in pregnant inflammatory bowel disease women from date of inception until April 2024 using MEDLINE, Cochrane library, EMBASE and ISI Web of Science databases, with keywords including 1) ultrasound/ultrasonography2) pregnancy, and 3) IBD (CD and UC). Additional relevant studies were identified from cross-referencing and hand-searches of references of the retrieved articles. We included fully published observational studies and abstracts.

Results: Overall, five studies have been selected from 264 citations. All studies were highly heterogeneous in the definition of disease activity as reference standard, IUS protocols, and outcomes. Two of them used a cut off value of fecal calprotectin (FCP) &gt;100 [ug/g]. In one of them, clinical scores were used when FCP value was ≥100-249 [ug/g] and FCP ≥ 250 [ug/g] was considered as an active disease independently of clinical scores. Only one study used a single reference standard with a Harvey Bradshaw Index (HBI) &gt;4. Across these 3 studies, results suggest a relatively good specificity (range 83%-98%) but low sensitivity (range 33%-84%) to detect disease’s activity. Only 1 study analysed IUS performance in detecting remission with a sensitivity of 80% and a specificity of 92% compared to the reference standard. The size of the uterus limits the visualization of the terminal ileum and the sigmoid from the second trimester and the third trimester respectively. The evaluation of the rectum remains limited. 

Conclusion: IUS appears to offer a practical, readily available and non-invasive means of monitoring disease activity in IBD pregnant women. However, existing literature on IUS accuracy is limited and further studies with standardized reference comparator are needed.
DOI: 10.6084/m9.figshare.26840350.v1
title: Supplementary Material for: Intestinal ultrasonography diagnostic performance and feasibility in IBD during pregnancy: a systematic review and narrative synthesis.

description: Introduction: Inflammatory bowel diseases (IBD), including Crohn’s disease (CD) and ulcerative colitis (UC) are associated to poor maternal and foetal outcomes during pregnancy, requiring a strict monitoring of the disease activity, preferably with non-invasive modalities. There are numerous data confirming intestinal ultrasonography (IUS) accuracy and efficacy for the detection of IBD disease activity and complications, but data in pregnant IBD patients are scarce. We aimed to evaluate the diagnostic performance and feasibility of IUS to monitor IBD activity throughout pregnancy.

Methods: A systematic literature review has been performed identifying studies the use of ultrasound modality in pregnant inflammatory bowel disease women from date of inception until April 2024 using MEDLINE, Cochrane library, EMBASE and ISI Web of Science databases, with keywords including 1) ultrasound/ultrasonography2) pregnancy, and 3) IBD (CD and UC). Additional relevant studies were identified from cross-referencing and hand-searches of references of the retrieved articles. We included fully published observational studies and abstracts.

Results: Overall, five studies have been selected from 264 citations. All studies were highly heterogeneous in the definition of disease activity as reference standard, IUS protocols, and outcomes. Two of them used a cut off value of fecal calprotectin (FCP) &gt;100 [ug/g]. In one of them, clinical scores were used when FCP value was ≥100-249 [ug/g] and FCP ≥ 250 [ug/g] was considered as an active disease independently of clinical scores. Only one study used a single reference standard with a Harvey Bradshaw Index (HBI) &gt;4. Across these 3 studies, results suggest a relatively good specificity (range 83%-98%) but low sensitivity (range 33%-84%) to detect disease’s activity. Only 1 study analysed IUS performance in detecting remission with a sensitivity of 80% and a specificity of 92% compared to the reference standard. The size of the uterus limits the visualization of the terminal ileum and the sigmoid from the second trimester and the third trimester respectively. The evaluation of the rectum remains limited. 

Conclusion: IUS appears to offer a practical, readily available and non-invasive means of monitoring disease activity in IBD pregnant women. However, existing literature on IUS accuracy is limited and further studies with standardized reference comparator are needed.
DOI: 10.15468/dl.t36uys
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Lithobius multidens Demange, 1958",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102566-240626123714530/datasets/export for details.
DOI: 10.15468/dl.xgcwsa
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiogomphus spinicornis Selys, 1878"
 ]
}

 The dataset includes 29 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102567-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tgrpvq
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Trimium diecki Reitter, 1882",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102568-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ypvn48
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Entelecara cacuminum Denis, 1954",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102569-240626123714530/datasets/export for details.
DOI: 10.5281/zenodo.10369205
title: Korpus der Entscheidungen des Bundesverfassungsgerichts

description: Korpus von Entscheidungen des Bundesverfassungsgerichts im XML-Format. 

Folgende Entscheidungen sind enthalten:

1951-1997: Entscheidungen, die in der Amtlichen Sammlung veröffentlicht wurden (mit freundlicher Unterstützung durch den Mohr Siebeck Verlag).1998-2022: Senats- und Kammerentscheidungen von der Website des BVerfG.

Enthält insbesondere folgende Annotationen: Leitsätze, Rubrum, Tenor, Gründe, Tatbestand, Entscheidungsgründe, abweichende Meinung

------------------------------------------------------------------------

Corpus of decisions of the German Federal Constitutional Court in XML format.

Contains:

1951-1997: Decisions published in the official report series (courtesy of Mohr Siebeck Verlag)1998-2022: Decisions published on the GFCC's website. 

Includes annotations, namely: headnotes (Leitsätze), caption (Rubrum), judgment (Tenor), reasons (Gründe), fact section (Tatbestand), reasoning section (Entscheidungsgründe), separate opinion (abweichende Meinung)

 

The creation of this dataset has been realized in the L.L.Con project graciously funded in the years 2017-2023 by means of the Gottfried-Wilhelm Leibniz prize awarded to Prof. Dr. Christoph Möllers
DOI: 10.17632/y55wfcsrhz.1
title: A public dataset of overground walking kinetics in healthy adult individuals on different sessions within one day

description: The dataset comprises raw kinetic data of 42 healthy subjects (22 female, 20 male; M age: 25.6 years, SD 6.1; M body height: 1.72 m, SD 0.09; M body mass: 66.9 kg, SD 10.7) during overground walking. All subjects were without gait pathology and free of lower extremity pain or injuries. The file 'GRF_META_DATA.csv' contains additional meta information for each subject and session, including: "SUBJECT_ID" [number] "SESSION_ID" [number] "GENDER" [female ; male] "AGE" [years] "BODY_SIZE" [m] "BODY_MASS" [kg] The six ground reaction force data files are organized according to the following naming convention: “GRF-type-processing-side.csv”. The type denotes, whether the file holds the data of the vertical (“F_V"), anterior-posterior (“F_AP"), medio-lateral (“F_ML") ground reaction force time-series. Each of the “GRF-type-processing-side.csv” files is structured as a matrix with N rows and M columns. Each row holds the data of one trial. The first column identifies the subject (“SUBJECT_ID”), the second column the number of the recording session (“SESSION_ID”), and the third column the gait velocity of the trial (“VELOCITY”). Note that due to the non-time-normalized nature of the data and the resulting different vector lengths in the “RAW” files, non-available numbers have been replaced by “NaN” to maintain a constant matrix dimension. When using (any part) of this dataset, please cite this dataset and the original article: Burdack, J., Horst, F., Giesselbach, S., Hassan, I., Daffner, S., & Schöllhorn, W. I. (2020). A public dataset of overground walking kinetics in healthy adult individuals on different sessions within one day. Mendeley Data, v1. http://dx.doi.org/10.17632/y55wfcsrhz.1 Burdack, J., Horst, F., Giesselbach, S., Hassan, I., Daffner, S., & Schöllhorn, W. I. (2019). Systematic comparison of the influence of different data preprocessing methods on the classification of gait using machine learning. Preprint at: https://arxiv.org/abs/1911.04335 Please feel free to send us your technical questions, requests and bug reports by email: horst@uni-mainz.de
DOI: 10.25345/c5fd6z
title: MassIVE MSV000085358 - Staphylococcus aureus D592 & D712 +Vancomycin (LC/MS, HPLC, BPC data)
title: This is a repository of LC/MS, HPLC, BPC data collected from two strains of Staphylococcus aureus: Strain D592 grown in RPMI (+10%LB) and CA-MHB, and strain D712 grown in RPMI (+10%LB) and CA-MHB. Both stains in both media conditions were grown in both the presence and absence of vancomycin.
DOI: 10.4225/15/526f42ada05b1
title: Polar soil bacterial and fungal biodiversity survey
DOI: 10.5061/dryad.63q27.2
title: Data from: Three keys to the radiation of angiosperms into freezing environments
DOI: 10.5281/zenodo.10276914
title: St. Clair River 2007 Hydrographic Survey

description: First multibeam hydrographic survey of the entire main stem of St. Clair River.
2007 Bathymetry data was collected by the US Army Corps of Engineers, Detroit District
 
Algonac Junction Buoy to Fort Gratiot Lt.
Data were averaged into 5' x 5' grids, center placed, with limited area of 2' x 2' grid.
Data were collected with a hydrographic survey system onboard the S/V WHEELER comprised of:
 
1) a Reson 8125 multi-beam at 455 kHz with a .5 degree beam width
2) a velocity profiler
3) GPS/POS MV positioning and heave, pitch and roll compensation
 
This survey data set meets the requirements of EM 1110-2-1003 1 Jan 02
 
Projection for all files and coordinates is NAD 83 Michigan State Plane South meters.
All depths, datums and elevations are in meters.  Elevations referenced to IGLD 85.
X Y Z Datum Elevation
x-coordinate Michigan State Plane South Meters
y-coordinate Michigan State Plane South Meters
z - depth, meters, relative to low water datum
Datum - Low Water Datum for point
Elevation - bottom elevation of river, meters, relative to IGLD85
DOI: 10.5281/zenodo.10277945
title: St. Clair River 2012 Hydrographic Survey

description: Fort Gratiot to Algonac
approximately 1 meter spacing
collected with R2Sonic in the 400kHz range
velocity profiler
GPS/POS MV positioning pitch and roll compensation
Survey meets requirements of EM1110-1003 30 November 2013
X, Y, Z
x-coordinate Michigan State Plane South Meters
y-coordinate Michigan State Plane South Meters
z-bottom elevation of river, meters, relative to IGLD85
DOI: 10.5281/zenodo.10277959
title: St Clair River 2021 Hydrographic Survey

description: Fort Gratiot to Algonac
approximately 1 meter spacing
collected with R2Sonic in the 400kHz range
velocity profiler
GPS/POS MV positioning pitch and roll compensation
Survey meets requirements of EM1110-1003 30 November 2013
Field1, Field2, Field 3
Field 1-coordinate Michigan State Plane South Meters
Field 2-coordinate Michigan State Plane South Meters
Field 3-bottom elevation of river, meters, relative to IGLD85
DOI: 10.5281/zenodo.10569258
title: Quartz as an Accurate High-Field Low-Cost THz Helicity Detector - Data Sets and Code

description: Data sets and code for the paper "Quartz as an Accurate High-Field Low-Cost THz Helicity Detector", published with open-access in Optica under https://doi.org/10.1364/OPTICA.515909

The data was measured at the Department of Physical Chemistry, Fritz Haber Institute of the Max Planck Society in Berlin.

Contents:



Data from Fig. 1 (THz fluence dependence of EOS in 50um quartz)

Data from Fig. 2 (EOS in 50um quartz and 10um ZnTe)

Data from Fig. 3 (Thickness dependence of EOS in quartz)

Data from Fig. 4 (Azimuthal angle dependence of EOS in 50um Quartz, 2D-EOS of linear THz polarizer sweep)

Data from Fig. 5 (2D-EOS of y-cut quartz transmission)

Quartz Detector Response Function (Written in Matlab and with example)


Data of the Supplementary Materials will be provided upon reasonable request. Please contact Maximilian Frenzel (frenzel@fhi-berlin.mpg.de) and/or Sebastian F. Maehrlein (maehrlein@fhi-berlin.mpg.de) for such a request or for general questions.
description: S.F.M. acknowledges funding for his Emmy Noether group from the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation, Nr. 469405347).
DOI: 10.5281/zenodo.8131611
title: Research data for "Fabrication uncertainty guided design optimization of a photonic crystal cavity by using Gaussian processes"

description: Data publication for the paper "Fabrication uncertainty guided design optimization of a photonic crystal cavity by using Gaussian processes"

Contains scripts for performing fabrication uncertainty guided design optimization, example scripts, research data (raw data),  cleanup), additional information on models, convergence plots, and field exports.

Funding





We acknowledge funding by the German Federal Ministry of Education and Research (BMBF project siMLopt number 05M20ZAA and BMBF Forschungscampus MODAL number 05M20ZBM) as well as funding by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy -- The Berlin Mathematics Research Center MATH+ (EXC-2046/1, project ID: 390685689). This project (20FUN05 SEQUME) has received funding from the EMPIR programme co-financed by the Participating States and from the European Union’s Horizon 2020 research and innovation programme. This project is co-financed by the European Regional Development Fund (EFRD, application no. 10184206, QD-Sense).
DOI: 10.6080/k02z13fp
title: Simultaneous intracellular and extracellular recordings from hippocampus
			region CA1 of anesthetized rats.
title: CRCNS.org hc-1

description: The data set is recorded from the CA1 hippocampal region. They contain recordings from the
                same neuron recorded both intracellularly and extracellularly.  Part of this data set has been
                already tested by various laboratories to test the uniquely developed unit clustering algorithms.
DOI: 10.6084/m9.figshare.12246251.v1
title: Growth curve values of D712 and D592 strains

description: The file contains growth curve values of "Identifying the effect of vancomycin on HA-MRSA strains using bacteriological and physiological media"
DOI: 10.5281/zenodo.1158452
title: France Social Contact Data

description: Social contact data for France
description: {"references": ["B\u00e9raud G, Kazmercziak S, Beutels P, Levy- Bruhl D, Lenne X, Mielcarek N, et al. (2015) The French Connection: The First Large Population- Based Contact Survey in France Relevant for the Spread of Infectious Diseases. PLoS ONE 10(7): e0133203. doi:10.1371/journal.pone.0133"]}
DOI: 10.5281/zenodo.1215891
title: Peruvian Social Contact Data

description: This is the social contact data for Peru.
description: {"references": ["Grijalva CG, Goeyvaerts N, Verastegui H, Edwards KM, Gil AI, Lanata CF, et al. (2015) A Household-Based Study of Contact Networks Relevant for the Spread of Infectious Diseases in the Highlands of Peru. PLoS ONE 10(3): e0118457. doi:10.1371/journal.pone.0118457"]}
DOI: 10.5281/zenodo.1215899
title: Polymod Social Contact Data

description: This is the POLYMOD study data.
description: {"references": ["Mossong J, Hens N, Jit M, Beutels P, Auranen K, et al. (2008) Social Contacts and Mixing Patterns Relevant to the Spread of Infectious Diseases. PLOS Medicine 5(3): e74. https://doi.org/10.1371/journal.pmed.0050074"]}
DOI: 10.5281/zenodo.841794
title: Moore Grantee List Of Articles

description: Data collected on publications authored by grantees of the Gordon and Betty Moore Foundation from 2001 - 2017. Data are based on self reporting from grantees and Crossref FundRef search. <strong>These data are not intended to represent a complete list of publications from grantees.</strong> This data was used to understand the potential impacts of an open access policy under consideration at the Moore Foundation.
DOI: 10.6084/m9.figshare.12246248.v1
title: RNAseq summary

description: The file is the supporting information (RNAseq) of Scientific data "Identifying the effect of vancomycin on HA-MRSA strains using bacteriological and physiological media"
DOI: 10.6084/m9.figshare.12246257.v1
title: RNAseq workflow

description: This folder contains workflow of RNAseq workflow. It is a part of publication "Identifying the effect of vancomycin on HA-MRSA strains using bacteriological and physiological media"
DOI: 10.6084/m9.figshare.25585323.v1
title: Arcsine transformed data, evaluation of inoculation techniques of endophytic entomopathogenic fungi, lt50%

description: This finding was conducted on the biological control of <i>Tuta absoluta </i>of the tomato plant<i> </i>using two endophytic entomopathogenic fungi through artificial inoculation.
DOI: 10.15468/dl.chkj9g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Lithobius cryptobius Silvestri, 1897",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102570-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.11861754
title: Araucaria_RNA-seq_contigs.fasta

description: Araucaria_RNA-seq_contigs.fasta: fasta archive of contigs from RNA-seq are available at 10.6084/m9.figshare.11861754
DOI: 10.6084/m9.figshare.11953674
title: Osteoclast-specific eQTL results for osteoporosis risk variants (co-localised loci)

description: This dataset contains osteoclast-specific expression quantitative trait locus (eQTL) summary statistics for 21 genetic loci demonstrating co-localisation with estimated bone mineral density (eBMD) genome-wide association study (GWAS) association signals from Morris et al. (PMID 30598549). The data is provided in a single .xlsx file. The complete osteoclast eQTL dataset is publicly available on the GEnetic Factors for OSteoporosis Consortium (GEFOS) website (http://www.gefos.org/?q=content/human-osteoclast-eqtl-2018-2020).<br> The eQTL results were generated from a study of 158 osteoclast cell cultures (PMID 32216834, 29473973, 30705363). Genome-wide array genotyping was performed on genomic DNA samples from the study participants using the Illumina Infinium OmniExpress-24 BeadChip array, with imputation performed using the Haplotype Reference Consortium (HRC) release 1.1 reference panel. Transcriptome-wide quantitation of gene expression was performed on the osteoclast RNA samples using 50 bp single-end RNA-Seq on an Illumina HiSeq 2500. Trimmed mean of M-values (TMM) normalisation and correction for total read count by conversion to counts per million (CPM) was performed on the gene expression data using the edgeR package. The eQTL analysis was performed on the TMM-normalised CPM gene expression values using the FastQTL software, implementing quantile normalisation. Only variants with a MAF≥5% were included in the analysis, which was adjusted for the covariates patient age, RNA-Seq batch and 10 genomic principal components.
DOI: 10.5281/zenodo.10174169
title: Internal tides vertical structure and steric sea surface height signature south of New Caledonia revealed by glider observations

description: Data to reproduce the figures of the preprint Internal tides vertical structure and steric sea surface height signature south of New Caledonia revealed by glider observations, submitted to Ocean Science
DOI: 10.5281/zenodo.11143818
title: Learning tasks and result data for the 2024 IWERL@GECCO paper A Closer Look at Length-niching Selection and Spatial Crossover in Variable-length Evolutionary Rule Set Learning

description: Learning tasks and result data for the paper Length-niching Selection and Spatial Crossover in Variable-length Evolutionary Rule Set Learning by David Pätzel, Richard Nordsieck and Jörg Hähner, presented at the International Workshop on Evolutionary Rule-based Machine Learning taking place as part of GECCO 2024.