cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.j2bzh8
title: Occurrence Download

description: A dataset containing 8402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Rynchops niger Linnaeus, 1758"
 ]
}

 The dataset includes 8402 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013264-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/8xz69cb4np
title: Associations of CR1, education, and occupation with high cognitive functioning in older adults: a Brazilian sample

description: The study was conducted with 122 community-dwelling older adults with or over 75 years of age, male or female, with no diagnosed neurodegenerative disease in Southern Brazil (see Table 1 for demographic data). Participants were recruited through social media, the distribution of flyers, the snowball method (Vinuto, 2014), and institutional partnerships (the Federal University of Paraná, a local church, and private health practice firms). All participants were required to participate in the study in an autonomous manner (i.e. with no aid from family members or caretakers), and were excluded from the analysis if they did not manage to score at least one correct response to any conditions throughout all cognitive tests.
Polymorphisms in the rs6656401 alleles A and G of the CR1 gene in the 1q32.2 chromossome were investigated. The genetic assessment was conducted with 60 participants. After the application of the exclusion criteria, 12 participants were excluded from the analysis, granting a final sample of 48 participants with genetic data.
DOI: 10.17632/gswvb2s2ht
title: Dataset on Dynamic Testing Techniques of Non-Functional Requirements in Mobile Apps

description: This dataset contains information extracted from the 56 papers which potentially discuss on Dynamic Testing Techniques of Non-Functional Requirements on Mobile Applications. From this information, it is possible to identify, evaluate, and collect available relevant research works about non-functional requirements testing on mobile applications. Moreover, such information is helpful to assess: trends, purpose, perspective, tool support, and industry collaboration.  It contains two main folders: (1) Data Extraction Stage; and (2) Data Analysis Stage. The folder "Data Extraction Stage" contains the spreadsheet with the extracted data from the 56 selected studies. On the other hand, the folder "Data Analysis Stage" contains the all figures, and python and Matlab scripts used to generate the graphs and figures. Moreover, we included a pdf file with all search string applied for each search engine.
DOI: 10.6084/m9.figshare.22751909.v1
title: Using sentinel nodes to evaluate changing connectivity in a protected area network

description: It has been recognized that well-connected networks of protected areas are needed to halt the continued loss of global biodiversity. The recently signed Kunming-Montreal biodiversity agreement commits countries to protecting 30% of terrestrial lands in well-connected networks of protected areas by 2030. To meet these ambitious targets, land-use planners and conservation practitioners will require tools to identify areas important for connectivity and track future changes. In this study we present methods using circuit theoretic models with a subset of sentinel park nodes to evaluate connectivity for a protected areas network. We assigned a lower cost to natural areas within protected areas, under the assumption that animal movement within parks should be less costly given the regulation of activities. We found that by using mean pairwise effective resistance (MPER) as an indicator of overall network connectivity, we were able to detect changes in a parks network in response to simulated land-use changes. As expected, MPER increased with the addition of high-cost developments and decreased with the addition of new, low-cost protected areas. We tested our sentinel node method by evaluating connectivity for the protected area network in the province of Ontario, Canada. We also calculated a node isolation index, which highlighted differences in protected area connectivity between the north and the south of the province. Our method can help provide protected areas ecologists and planners with baseline estimates of connectivity for a given protected area network and an indicator that can be used to track changes in connectivity in the future.
DOI: 10.6084/m9.figshare.9805052.v1
title: Snail Foraging Data.xlsx from Resource distribution and internal factors interact to govern movement of a freshwater snail

description: Movement enables mobile organisms to respond to local environmental conditions and is driven by a combination of external and internal factors operating at multiple scales. Here, we explored how resource distribution interacted with the internal state of organisms to drive patterns of movement. Specifically, we tracked snail movements on experimental landscapes where resource (algal biofilm) distribution varied from 0 to 100% coverage and quantified how that movement changed over a 24 h period. Resource distribution strongly affected snail movement. Trajectories were tortuous (i.e. Brownian-like) within resource patches but straighter (i.e. Lévy) in resource-free (bare) patches. The average snail speed was slower in resource patches, where snails spent most of their time. Different patterns of movement between resource and bare patches explained movement at larger spatial scales; movement was ballistic-like Lévy in resource-free landscapes, Lévy in landscapes with intermediate resource coverage and approximated Brownian in landscapes covered in resources. Our temporal analysis revealed that movement patterns changed predictably for snails that satiated their hunger and then performed other behaviours. These changes in movement patterns through time were similar across all treatments that contained resources. Thus, external and internal factors interacted to shape the inherently flexible movement of these snails.
DOI: 10.17632/7g7zpy9vcb
title: Rock Image Datasets

description: This dataset has been used is Lei Shu's PhD dissertation (https://ir.lib.uwo.ca/etd/5705/) and Alexis Pascual's paper (in review)
DOI: 10.17632/82p7gddw3y
title: Skeletal muscle-derived IL-33 mediates muscle-to-bone crosstalk and regulates bone metabolism via CD8+ T cell-secreted CCL5.

description: RAW DATA FOR Skeletal muscle-derived IL-33 mediates muscle-to-bone crosstalk and regulates bone metabolism via CD8+ T cell-secreted CCL5.
DOI: 10.6084/m9.figshare.18427295.v1
title: Dataset reliability validity responsiveness instrumented strength assessment

description: This dataset contains reliability, validity and responsiveness data of the instrumented strength assessment from typically developing children and children with cerebral palsy and Duchenne muscular dystrophy. This dataset is used in the paper: Instrumented strength assessment in typically developing children and children with a neural or neuromuscular disorder: a reliability, validity and responsiveness study
DOI: 10.6084/m9.figshare.28278602.v1
title: Dataset from response of a low concentration dose on fescue toxicosis mitigation in beef cattle

description: Dataset from the response of a low concentration dose on fescue toxicosis mitigation in beef cattle
DOI: 10.6084/m9.figshare.6943715.v1
title: Moment of inertia through scaling and the parallel axis theorem

description: Abstract A right triangular plate scaled by a factor two generates a bigger plate composed of four triangular plates the same size as the original. By using dimensional analysis we write the moment of inertia around the center of mass, for the original and the bigger plate, in terms of a common unknown parameter. Through the parallel axis theorem we relate the moments of inertia of both plates and finally solve a very simple equation to find out the unknown parameter. This procedure avoids to calculate integrals. The result is extended to a scalene triangular plate by recognizing it is composed of two right triangular plates. We also review the parallel axis theorem in an appendix.
DOI: 10.11583/dtu.28443050.v1
title: Nudging tool to prevent rebound effects and promote secondary benefits of sustainable design

description: This data includes the nudging tool which is part of the MSc Thesis: "Using behavioural design to prevent rebound effects and promote secondary benefits of sustainable design"<br><br>The goal of the project is to develop a tool for designers that utilises behavioural design to prevent rebound effects and promote secondary benefits. The content of the tool is based on a comprehensive literature review on behavioural design and environmental sustainability. The tool was tested with various experts within the field and the industry.
DOI: 10.17632/kmmw43j2z6
title: Transcriptional space-time mapping identifies concerted immune and stromal cell patterns and gene programs in wound healing and cancer

description: Tables and Figures for extended data accompanying the publications:
Mendeley Table S1: Counts for cells in CyTOF runs accompanying Figure 1 and Supplementary Figure 1
Mendeley Table S2: Parameters used for creation of Imaris Objects used in Figures 2, S2, 3, S3, S4, 7 and S7
Mendeley Figure S1: Extended figures accompanying Figure 1 and S1
Mendeley Figure S4: Extended figures accompanying Figure 4 and S4
DOI: 10.17632/ncdf5dvsm7
title: DIGITAL TRANSFORMATION AND SUSTAINABILITY: A SYSTEMATIC REVIEW OF THE LITERATURE.

description: Bibliometric data from search made at Scopus and Web of Science on November, 2023 Search Date: 21/11/2023 Search Query: All Fields: Digital Transformation, Sustainability, Industry 4.0, ESG.
DOI: 10.17632/zn68xjpmnr
title: Data for: A systematic review of the socio-economic impacts of large-scale tree plantations, worldwide

description: Raw data and a record of studies excluded.
DOI: 10.6084/m9.figshare.13574426.v1
title: IJGIS-code & data

description: IJGIS-code & data
DOI: 10.6084/m9.figshare.24899643.v1
title: scRNAseq data

description: Single cell sequencing datasets of the spider <i>P. tepidariorum</i>. The datasets can be used as shown in the html to plot gene features in a variety of ways.
DOI: 10.17632/f3hwx3kkw3
title: Unveiling the effects of crop rotation on soil pH mapping: a soil sample grouping strategy

description: We explored the effects of incorporating crop rotation on digital mapping of soil pH. Facing the challenge of quantifying the extent to which crop rotation affects soil pH mapping accuracy, we introduced the soil sample grouping strategy. We hypothesized that grouping soil samples by crop rotation could built optimized sub-models for different rotations and achieve a higher accuracy than simply incorporating crop rotation. To test this hypothesis, we selected a typical acidic soil region in Southern China where the agricultural landscape is highly heterogeneous due to intensive and diversified cropping systems. Specifically, the objectives of this study are (1) to explore the effectiveness of simply incorporating crop rotation in mapping soil pH and (2) to verify whether and to what extent the soil sample grouping strategy and separate modeling for different crop rotations could further improve digital mapping of soil pH.
DOI: 10.17632/rw4b2zdk95
title: A Benchmark Dataset for Printed Meitei/Meetei Script Character Recognition

description: The Manipuri language is the official language of the Indian state of Manipur. The language belongs to the Tibeto-Burman family of languages. The dataset contains scanned 824 pages of printed documents, along with binarized images, text files, and XML files for each raw image. It also includes 51,460 isolated character samples, composed of 27 consonants, 7 half-consonants, 8 vowels, and 10 numerical. This dataset could be used not only for optical character recognition (OCR) research but also in the different research areas of natural language processing (NLP).
DOI: 10.17632/vp5nhy5z32
title: Supplementary data and results of the application of a proposed approach of the characteristic equation method in a thermodynamic simulation for different single-effect lithium bromide/water (LiBr/H2O) absorption chillers

description: A proposed approach of the characteristic equation method presented in a previous study (Fischer et al., 2020) was thermodynamically simulated for six different LiBr/H2O single-effect absorption chillers in a more recent study.
The input data of the internal parameters of each absorption chiller, which are all the overall heat transfer conductances (UA) and the internal mass flow rate of the weak solution of the absorption chiller were collected in the literature (Boudehenn et al., 2014; Fischer et al., 2020; Martínez et al., 2016; Herold et al., 2016; Gommed and Grossman, 1990) 
The input data of the temperatures and mass flow rates of the external water circuits were selected from the usual nominal temperature ranges were found in the literature.
Figure 1 presents the single-effect lithium bromide/water (LiBr/H2O) absorption chiller with its components and temperature points numbered. The numbers in this figure correspond to the chiller points in the study as well.
The values of the input data of the internal parameters of each absorption chiller are shown in Table 1.
The chiller Tables present the values of the input data of the temperatures of the external water circuits and the main results of the simulation.
The figures of the graphs present the distribution of the points of the results of the simulation.

References: 
Fischer, Y., Dutra, J. C. C., Rohatgi, J. (2020): Thermodynamic modelling of a LiBr-H2O absorption chiller by improvement of characteristic equation method. International Journal of Refrigeration, vol. 120, pp. 420-429.
Boudéhenn, F., Bonnot, S., Demasled, H., Lazrak, A. (2014): Comparison of different modeling methods for a single effect water-lithium bromide absorption chiller. Proceedings of the International Conference on Solar Energy and Buildings, Aix-les-Bains, France.
Martínez, J. C., Martinez, P. J., Bujedo, L. A. (2016): Development and experimental validation of a simulation model to reproduce the performance of a 17.6 kW LiBr-water absorption chiller. Renewable Energy, vol 88, pp. 473-482
Herold, K. E., Radermacher, R. Klein, S. A. (2016): Absorption chiller and heat pumps. CRC Press, New York, 2nd ed.
Gommed, K., Grossman, G. (1990): Performance analysis of staged absorption heat pumps: water-lithium bromide systems. Ashrae Transactions, vol. 96, part 1.
DOI: 10.6084/m9.figshare.25183257.v1
title: Additional file 1 of Gene expression analysis reveals diabetes-related gene signatures

description: Additional file 1. List of genes for the differentially expressed genes (DEGs) for each study analysed (GSE164416, GSE25724, GSE76894, GSE20966, GSE86743, GSE124742).
DOI: 10.6084/m9.figshare.25195856.v1
title: Supplementary Material for: Increase of Phosphoprotein Expressions in Amotosalen/UVA-Treated Platelet Concentrates

description: <b><i>Background:</i></b> Pathogen inactivation treatment (PIT) has been shown to alter platelet function, phenotype, morphology and to induce a faster aging of platelet concentrates (PCs). Key pieces of information are still missing to understand the impacts of PITs at the cellular level. <b><i>Objectives:</i></b> This study investigated the impact of amotosalen/UVA on PCs, from a post-translational modifications (PTM) point of view. Phosphoproteomic analyses were conducted on resting platelets, right after the amotosalen/UVA treatment and compared with untreated PCs. <b><i>Method:</i></b> A two-arm study setting was carried out to compare PIT (amotosalen/UVA) to untreated PCs, on day 1 post-donation. Based on a pool-and-split approach, 12 PCs were split into two groups (treated and untreated). Quantitative phosphoproteomics was performed using TMT technology to study the changes of phosphoproteins right after the PIT. <b><i>Results:</i></b> A total of 3,906 proteins and 7,334 phosphosites were identified, and 2,473 proteins and 2,214 phosphosites were observed in at least 5 to 6 replicates. Compared to untreated platelets, PIT platelets exhibited an upregulation of the phosphorylation effects, with 109 phosphosites identified with a higher than 2-fold change. Two pathways were clearly identified. The mitogen activated protein kinases (MAPKs) cascade, which triggers the granule secretion and the activation of the pS15 HSPB1. One of the shape change pathways was also observed with the inhibition of the Threonine 18 and Serine 19 phosphorylations on myosin light chain (MLC) protein after the amotosalen/UVA treatment. <b><i>Conclusions:</i></b> This work provides a deep insight into the impact of amotosalen/UVA treatment from a phosphoprotein viewpoint on resting platelets. Clear changes in phosphorylation of proteins belonging to different platelet pathways were quantified. This discovery corroborates previous findings and fills missing parts of the effect of photochemical treatments on platelets.
DOI: 10.6084/m9.figshare.21081643.v1
title: Drug Perturbation Profiles

description: Cell lines were perturbed with compounds at sublethal concentrations, with a focus on antineoplastic drugs. After 24 hours of treatment (as well as 6 hours in some cell lines), cells were harvested and RNASeq performed on a multiplexed platform (PLATEseq). Post-perturbation RNASeq expression signatures were analyzed by cancer-type specific networks using VIPER, to generate post-perturbation protein activity signatures. These protein activity signatures are available here, representing de novo, experimentally-assessed, context specific drug mechanism of action. <br> These signatures were subsequently used to identify drugs predicted to invert Master Regulator signatures of individual tumors (OncoTreat algorithm).
DOI: 10.6084/m9.figshare.27427629.v1
title: Stage Two Experiments - Datasets

description: Data used in the various stage two experiments in: "Comparing Clustering Approaches for Smart Meter Time Series: Investigating the Influence of Dataset Properties on Performance". This includes datasets with varied characteristics.All datasets are stored in a dict with tuples of (time series array, class labels). To access data in python:<pre>import pickle<br>filename = "dataset.txt"<br>with open(filename, 'rb') as f:<br>    data = pickle.load(f)</pre>
DOI: 10.6084/m9.figshare.14158493.v1
title: Eastern PNG and Solomons Benthic Type Reference Sample

description: This benthic reference data is intended for use as a calibration and/or validation data for global scale remote sensing image based classification of coral reef areas. The data is in a vector shapefile format consisting of polygons labelled with one of seven coral reef benthic classes that include Microalgal Mats, Coral/Algae, Rubble, Rock, Seagrass Dense, Seagrass Sparse, Sand. <b>Please cite data as:</b> Roelfsema, C., Say, Borrego-Acevedo, R., Canto, R., Harris, D., Kennedy, E., Kovacs, E., Lyons, M., Markey, K., Murray, N., Ordonez Alvarez, A., Phinn, S., Roe, M., Tudman, P., C., Wolff, J., Yuwono, D., Bambric, B., Fox, H., Lieb, Z., Asner , G., Knapp , D., Li, J., Harris, B., Larsen, K. & Rice, K. 2021. Eastern PNG and Solomons Benthic Type Reference Sample. University of Queensland. DOI: https://doi.org/10.6084/m9.figshare.14158493 <b>Links to supplementary information:</b> Mapping methods overview (https://allencoralatlas.org/methods/) UQ mapping team web site (https://www.rsrc.org.au/globalreef) Detailed mapping methods description by Lyons et al. (https://doi.org/10.1002/rse2.157) Detailed classification scheme description by Kennedy et al. (https://doi.org/10.1038/s41597-021-00958-z) Detailed reference creation description workflow by Roelfsema et al. (https://doi.org/10.3389/fmars.2021.643381) <b>Funding:</b> Vulcan Inc., (https://vulcan.com) Great Barrier Reef Foundation (https://www.barrierreef.org/) <b>Acknowledgement:</b> This work was initiated and funded primarily through Paul Allen Philanthropies and Vulcan Inc. as part of the Allen Coral Atlas. We acknowledge the late Paul Allen and Ruth Gates for their fundamental vision and drive to enable us to work together on this critical reef mapping problem. Project partners providing financial, service and personnel include: Planet Inc., National Geographic, University of Queensland, Arizona State University, and University of Hawai'i. Significant support has also been provided by Google Inc., Great Barrier Reef Foundation, and Trimble (Ecognition). Contributors to establishing and running the project include: Vulcan Inc. [James Deutsch, Lauren Kickam, Paulina Gerstner, Charlie Whiton, Kirk Larsen, Sarah Frias Torres, Kyle Rice, Eldan Goldenberg, Janet Greenlee]; Planet Inc. [Andrew Zolli, Trevor McDonald, Joe Mascaro, Joe Kington]; University of Queensland [Chris Roelfsema, Stuart Phinn, Emma Kennedy, Mitch Lyons, Nicholas Murray, Doddy Yuwono, Dan Harris, Eva Kovacs, Rodney Borrego, Meredith Roe, Jeremy Wolff, Kathryn Markey, Alexandra Ordonez, Chantal Say, Paul Tudman]; Arizona State University [Greg Asner, Dave Knapp, Jiwei Li, Yaping Xu, Nick Fabina, Heather D'Angelo]; and National Geographic [Helen Fox, Brianna Bambic, Brian Free, Zoe Lieb] and Great Barrier Reef Foundation [Petra Lundgren, Kirsty Bevan, Sarah Castine]. Attributions of contributed field data or maps for the reference sample creation are available at: https://allencoralatlas.org/attribution/
DOI: 10.6084/m9.figshare.25112261.v1
title: Supplementary Material for: Bronchial Cryo-Denervation for Severe Asthma：A Pilot Study

description: Introduction
Targeting the parasympathetic nervous system innervating airway with pharmacologic products has been proved to improve the clinical outcomes of severe asthma. Bronchial cryo-denervation (BCD) is a novel non-pharmacologic treatment for severe asthma using an endobronchial cryo-balloon administered via bronchoscopy to denervate parasympathetic pulmonary nerves. Preclinical studies have demonstrated that BCD signiﬁcantly disrupted vagal innervation to the lung.
Methods
A total of 15 patients with severe asthma were enrolled in this prospective, single-center pilot study. Patients underwent bifurcated BCD treatment at 30-day interval after baseline assessment. Follow-up through 12 months included assessment of adverse event, technical feasibility, and changes in pulmonary function, asthma control questionaire-7 (ACQ-7) and asthma control test (ACT). 
Results
BCD was performed in all 15 severe asthma patients, with technical feasibility of 96.7%. There were no device-related and 2 procedure-related serious adverse events through 12 months, which resolved without sequelae. The most frequent nonserious procedure-related adverse event was increased cough in 60% (9 of 15) patients. Pulmonary function remained unchanged and significant improvements from baseline of ACQ-7 (mean, -1.19, p=0.0032) and ACT (mean, 3.18, p=0.0011) scores were observed since the first month's follow-up after a single lung airway treatment, with similar trends till the end of 12-month follow-up.
Conclusion
This study provides the first clinical evidence of the safety, feasibility, and initial efficacy of BCD in patients with severe asthma.