cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24428659.v3
title: The nature of the Last Universal Common Ancestor and its impact on the early Earth system

description: Supplementary data for the manuscript:The nature of the Last Universal Common Ancestor and its impact on the early Earth systemGene_Fastas contains the individual gene sequences, alignments and trimmed alignments for the reconciliation analyses, also included are the fasta files for the COG based reconciliationSpecies_Tree includes alignments, sequences, trees and concatenation fastas for the species tree inference, as well as the files involved in the recoding, domain and rooting testsTemperature_genes includes the optimal temperature inference test found in the supplementary materialGenome_Size_Number_estimates includes the files used to predict the genome size and number of proteins in LUCASubsample_test includes the files for the subsampled reconciliation testsTaxonomy includes the taxonomic information for each of the genomes<br><br>COG_OR_reconciliation includes the scripts and input/ouput needed for the COG functional category based optimization for the reconciliation files (as well as the fraction_missing per genome data), due to the size of the rec files, these are available here: https://data.bris.ac.uk/data/dataset/405xnm7ei36d2cj65nrirg3ip
DOI: 10.6084/m9.figshare.27230125.v1
title: Additional file 1 of Correction: A comprehensive review of in planta stable transformation strategies

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.6817379.v1
title: Additional file 12: of Refining a steroidogenic model: an analysis of RNA-seq datasets from insect prothoracic glands

description: Table S11. Tabulation of 1617 data points used to construct Fig. 2b. Data was derived from [4, 27â 32] (see text for details). (XLSX 647 kb)
DOI: 10.6084/m9.figshare.7284584.v1
title: QuickPALM: STORM over the Eiffel Tower

description: Single-molecule localization microscopy analysis being applied to a movie of the Eiffel Tower at night where a random activation of lights is being used. Movies where created in Institut Pasteur during my PhD while being hosted by the Christophe Zimmer laboratory, circa 2010.
DOI: 10.6084/m9.figshare.8988128.v1
title: Combinations of distance measures and clustering algorithms in pepper germplasm characterization

description: ABSTRACT Characterization and evaluation of genotypes conserved in the germplasm banks have become of great importance due to gradual loss of genetic variability and search for more adapted and productive genotypes. This can be obtained through several ways, generating quantitative and qualitative data. Joint analysis of those variables may be considered a strategy for an accurate germplasm characterization. In this study we aimed to evaluate different clustering techniques for characterization and evaluation of Capsicum spp. accessions using combinations of specific measures for quantitative and qualitative variables. A collection of 56 Capsicum spp. accessions was characterized based on 25 morphoagronomic descriptors. Six quantitative distances were used [A1) average of the range-standardized absolute difference (Gower), A2) Pearson correlation, A3) Kulczynski, A4) Canberra, A5) Bray-Curtis, and A6) Morisita] combined with distance for qualitative data [Simple Coincidence (B1)]. Clustering analyses were performed using agglomerative hierarchical methods (Ward, the nearest neighbor, the farthest neighbor, UPGMA and WPGMA). All combined distances were highly correlated. UPGMA clustering was the most efficient through cophenetic correlation and 2-norm analyses, showing a concordance between the two methods. Six clusters were considered an ideal number by UPGMA clustering, in which Gower distance showed a better adjustment for clustering. Most combined distances using UPGMA clustering allowed the separation of the accessions in relation to species, using both quantitative and qualitative data, which could be an alternative for simultaneous joint analysis, aiming to compare different clusters.
DOI: 10.6084/m9.figshare.12618854.v1
title: WATET code

description: WATET is a fully distributed coupled hydrological and solute transport model. In this setup it simulates the water and conservative solute flow in the Plynlimon catchment (Wales).
DOI: 10.6084/m9.figshare.12869984.v1
title: Parental Mentalization Measures Interview Transcripts (5).docx

description: 5 transcripts with expert clinicians and researchers in the field of mentalization. Interviews are semi-structured on the topic of parental mentalization measures, and the current strengths and weaknesses of existing measures. Aim of interview was to find out what essential elements are needed in clinically valid and usable measures of parental mentalization
DOI: 10.6084/m9.figshare.14253278.v1
title: housing price index prediction project data

description: S&P/Case-Shiller home price index and 12 demographic and macroeconomic factors in five metropolitan areas: Boston, Dallas, New York, Chicago, and San Francisco (SF) data were collected from the Federal Reserve Bank, FBI, and Freddie Mac. <br> https://fred.stlouisfed.org; http://www.freddiemac.com/pmms/; https://www.philadelphiafed.org/surveys-and-data/community-development-data/consumer-credit-explorer; https://ucr.fbi.gov/crime-in-the-u.s/2005; <br>
DOI: 10.6084/m9.figshare.20416101.v3
title: TMS_review_records

description: This dataset is the supplementary material of the systematic review (in revision): <br> <strong>Title</strong>: Devices and Technology in Transcranial Magnetic Stimulation: A Systematic Review <br> <strong>Journal</strong>: Brain science <br> <strong>Authors</strong>: Gutiérrez, M.I.; Poblete-Naredo, I.; Mercado-Gutiérrez, J.A.; Toledo-Peral, C.L.; Quinzaños-Fresnedo, J.; Gutiérrez-Martínez, J.
DOI: 10.6084/m9.figshare.23787363.v1
title: GGTWR data and codes

description: GGTWR data and codes
DOI: 10.6084/m9.figshare.25037384.v2
title: Date of test system

description: Date of test system
DOI: 10.6084/m9.figshare.28593698.v3
title: Raman-ChEMBL-part1

description: Raman-ChEMBL-part1
DOI: 10.6084/m9.figshare.5882242.v1
title: CitySounds2017train annotations

description: Annotations of sound events in the CitySounds2017<i><sub>train</sub></i> dataset created using AudioTagger software (https://github.com/groakat/AudioTagger).
DOI: 10.6084/m9.figshare.11151185.v1
title: Supplementary data for Bos grunniens genomic assembly (BosGru3.0) and population structural variation

description: This repository contains annotation file of the BosGru3.0 genome sequence, the data set of population-scale SV results.
DOI: 10.6084/m9.figshare.23574043.v1
title: Appraisal of arp images and machine learning to detect Sapajus nigritus attacks on loblolly’s pine stands in Southern Brazil

description: ABSTRACT Background: This study aimed to evaluate UAV images of Pinus taeda L. stands for classifying trees attacked by Sapajus nigritus in Southern Brazil. UAV images were acquired on March 2018, using a DJI Phantom Pro 4 over 18.73 hectares. We evaluated different band compositions and vegetation indices. Using photo interpretation based on the color of the crown and field measurements, the trees were manually labeled as not attacked, dead, and attacked. The classified trees were divided into training (75%) and validation (25%), considering three tree crown diameters (0.5, 1, and 1.5 m) and three region-oriented classification algorithms. The classification accuracy was assessed by overall accuracy and the kappa index. Results: A total of 3,773 trees were manually detected, of which 39% were attacked, 5% died and 56% were not attacked. The results also indicated that the best-chosen diameter was 0.5 meters, the best classifier algorithm was the SVM, and the highest accuracy was represented by the composition of the ExG index associated with the original spectral bands. Conclusion: We argue that the attacks can be monitored using UAV images and such results provide insights for forest management initiatives.
DOI: 10.6084/m9.figshare.24596718.v2
title: Communities with no access to shelters are more vulnerable to urban flood risks

description: Decades of environmental racism have disproportionately placed vulnerable communities in low-lying, flood-prone neighborhoods with limited access to shelter. Here we present a methodology to study the risk of urban floods in tandem with access to shelter to reduce the risk of flooding to communities and prevent a natural hazard from turning into a human disaster. We integrate access to national emergency shelters into a national risk index for riverine floods in eight U.S. cities at the block group level using clustering techniques. The results show shelters are more accessible for inner-city residents regardless of the risk level, and communities with high risk of flood and low access to shelter are disproportionately home to the underserved populations of Asians and the elderly. The outcomes delineate the disparity in equity related to urban floods and support plans and policy needs by identifying and prioritizing areas to improve emergency responses and resource allocations.
DOI: 10.17632/6gtg293sj8
title: Data for: Proximity, directional or neither of them?

description: This is a dataset based on an online survey by Laura Gallati and Nathalie Giger.
DOI: 10.6084/m9.figshare.19108127.v1
title: Competition contributes to both warm and cool range edges

description: Competition plays an important role in shaping species’ spatial distributions. However, it remains unclear where and how competition regulates species’ range limits. In an experiment with plants originating from low and high elevations and conducted across an elevation gradient in the Swiss Alps, we find that both lowland and highland species can better persist in the presence of competition within, rather than beyond, their elevation ranges. These suggest that competition helps set both lower and upper elevation range limits of these species. Furthermore, the reduced ability of pairs of lowland or highland species to coexist beyond their range edges is mainly driven by diminishing niche differences; changes in both niche differences and relative fitness differences drive weakening competitive dominance of lowland over highland species with increasing elevation. These results highlight the need to account for competitive interactions and investigate underlying coexistence mechanisms to understand current and future species distributions.
DOI: 10.6084/m9.figshare.25163732.v1
title: Supplementary Material for: Phlegmonous colitis after cold snare polypectomy in an immunosuppressed patient: A case report

description: Introduction: Cold snare polypectomy (CSP) is a procedure with a low risk of complications. Here, we present our experience of a rare case of submucosal abscess following CSP in an immunosuppressed patient.
Case presentation: 78-year-old man underwent CSP, developing a fever, chills, and right lower abdominal pain 8 days later. Ultrasound and computed tomography revealed wall thickening of the ascending colon, presenting as whitening and thickening of the same region, and excretion of pus was observed after biopsy. The diagnosis was made as phlegmonous colitis, for which antibiotic therapy was commenced. The patient was diagnosed with chronic myelomonocytic leukemia (CMML) during admission. We considered the following reasons as possible causes of infectious complications after CSP: 1) the patient had a highly immunosuppressed state with comorbidities such as CMML as well as diabetes mellitus, and 2) disruption of the mucosal barrier occurred during endoscopic resection.
Conclusion: Although CSP is generally considered safe, our case highlights the potential for serious complications in immunosuppressed patients. Therefore, the decision to perform CSP in such patients should be made with caution to avoid unnecessary interventions. In instances where treatment is essential, thorough bowel preparation and prophylactic antibiotic use may be necessary to mitigate the risks.
DOI: 10.6084/m9.figshare.28004447.v1
title: Annotations of <i>Kappaphycus striatus</i> genome

description: Gene strutural and gene functional annotations of <i>Kappaphycus striatus</i> genome.The related genome assembly of <i>Kappaphycus striatus</i> is available in NCBI.
DOI: 10.6084/m9.figshare.5042998.v6
title: Research Data Management Teaching Toolkit

description: This teaching toolkit is designed to be used for a one hour introductory data management class for biomedical researchers. It consists of an instructional guide for teaching the material, a PowerPoint presentation with a script in the accompanying notes to each slide, and a separate evaluation form. This material is built on training material provided in the BD2K funded online research data management educational modules that are freely available here: http://bit.ly/RDM_Modules
DOI: 10.6084/m9.figshare.5930257.v1
title: RAAAP Main Dataset

description: The RAAAP project surveyed Research Managers and Administrators from across the world, asking questions about why people became RMAs, why they stayed as RMAs, what skills they need for their jobs (soft and hard), what level of seniority they are, demographic information, and so on - overall up to 222 data points were collected from each respondent. This is the main dataset comprising mainly closed question responses and likert-type scale responses. It holds responses collected in 2016 from 2,691 RMAs across 64 countries, but with a heavy bias to North America and Europe in terms of the volume of responses
DOI: 10.17632/zzw599rty5
title: Omani Road Traffic Accident Dataset Spanning From (2012 –2022)

description: Dataset provides Omani Road Traffic Accident Dataset Spanning From (2012 –2022) . It includes three secondary data subsets. The primary data subsets include Number of Traffic Accidents, Injuries, and Deaths by Governorates & Type, Number of Traffic Accidents, Injuries, and Deaths by Governorates and Nationality and Number of Traffic Accidents, Injuries, and Deaths by Causes.
DOI: 10.6084/m9.figshare.24481501.v3
title: Gut Microbial Gene Catalog and MAGs of Pigs

description: The pig gut microbial gene catalog and MAGs are constructed by metagenomic analysis of 112 fecal samples from seven pig breeds.
DOI: 10.15131/shef.data.13060610.v1
title: Data for manuscript: Optical analogue of Dresselhaus spin-orbit interaction in photonic graphene

description: Experimental data for the Nature Photonics Letter "Optical analogue of Dresselhaus spin-orbit interaction in photonic graphene".
DOI: 10.17632/5j8bv45rnr
title: Data for: The physical economy of France (1830-2015). The history of a parasite ?

description: Material flow analysis of France. See the paper and the supplementary material for more details.
DOI: 10.17632/tggrsbz3bb
title: Dataset for country profile and mobility analysis in the assessment of COVID19 pandemic

description: Understanding the COVID-19 pandemic is a multidisciplinary effort that requires a significant number of variables. This dataset comprises (i) sociodemographic characteristics, compiled from 35 datasets obtained at UN Data; (ii) mobility metrics that can assist the analysis of social distancing, from Google Community Mobility Reports and; (iii) daily counts of cases and deaths by COVID-19, from the European Centre for Disease Prevention and Control and the Johns Hopkins University Center for Systems Science and Engineering. This unified dataset ranges from February 15, 2020 to May 7, 2020, a total of 83 days, and is provided as a collection of time series for 131 countries with 192 variables. The pipeline to preprocess and generate the dataset, along with the dataset itself, are versioned with the Data Version Control tool (DVC) and are thus easily reproducible.
DOI: 10.6084/m9.figshare.11619045.v1
title: DMR Benchmark Data

description: Benchmark data for assessing the performance of DMR methods. <br>See https://github.com/clemenskreutz/DMR-DecisionTree for more details.<br><br>
DOI: 10.17632/bh4gy7ggvv
title: A vibrational configuration interaction program for energies and resonance widths

description: Abstract We present a computer program to calculate energies and Feshbach golden-rule resonance widths of systems described by a two-dimensional vibrational Hamiltonian. The steps involved are evaluation of matrix elements over the potential and basis functions, diagonalization of a vibrational configuration interaction matrix, projection of the resonance component out of a new basis set (involving vibronic-interaction-like integrals), and evaluation of the transition matrix elements. Title of program: VIBCI Catalogue Id: ABDY_v1_0 Nature of problem The purpose of this program is to calculate energies and widths of vibrational resonances in two-dimensional systems. As detailed previously, we use stabilization to find an approximate resonance function and resonance energy, a Feshbach projection operator formalism to find a representative "continuum" function, and a golden-rule formalism to calculate the width. Versions of this program held in the CPC repository in Mendeley Data ABDY_v1_0; VIBCI; 10.1016/0010-4655(88)90075-6 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.25971745.v3
title: data 2024 .9.30.dta

description: Relying on panel data from 31 provinces, autonomous regions, and municipalities in China from 2012 to 2022, this paper constructs a comprehensive evaluation index system for digital trade and the international competitiveness of the manufacturing industry.
DOI: 10.17632/9wh3bn64h6
title: David Ricardo’s Principle of Comparative Cost Advantage inspires International Trade.

description: David Ricardo’s Principle of Comparative Cost Advantage inspires International Trade.
DOI: 10.17632/cg7t7jf29n
title: Data for: Thermo-hydraulic performance analysis of a solar air heater roughened with reverse NACA profile ribs

description: The research data file contains processed data used in the manuscript.
DOI: 10.17632/sxgmtwhvbs
title: Data for "The Ganzflicker Experience: Rhythmic visual flicker induces complex illusions in people with visual imagery but not aphantasia"

description: ----------------------------------------------- DESCRIPTION ----------------------------------------------- README for the data and analysis scripts for the manuscript currently titled "The Ganzflicker Experience: Rhythmic visual flicker induces complex illusions in people with visual imagery but not aphantasia" by Varg T Königsmark, Johanna Bergmann, and Reshanne R Reeder. Submitted to Mendeley Data by Reshanne Reeder. The experiment was performed entirely online, and all responses to the questionnaire were collected with Google Forms, and downloaded in .ods format (LibreOffice Calc spreadsheet). Several responses on the questionnaire were text statements, which were recoded as single digits for analysis. All names, e-mail addresses, and personalized written responses were removed so that individuals could not be identified. The coded data are saved in .csv format to perform analyses in JASP. Scripts to create the figures in the manuscript are coded in python. Abstract Rhythmic visual flicker is known to induce illusions and altered states of consciousness. Previous research has suggested that the form of “simple” illusions (e.g., geometric patterns) is constrained by the functional architecture of early visual cortical areas. As of yet, the nature of more “complex” illusions (e.g., naturalistic living and non-living things) is under-represented within the current literature. Very recent findings showed that visual imagery vividness correlates positively with the likelihood to experience anomalous percepts. Here, we tested whether imagery ability is associated with individual differences in both susceptibility to, and complexity of, flicker-induced illusions (FII). We recruited a sample of people with aphantasia (the complete lack of visual imagery) and a sample of people with imagery. We found that people with visual imagery were more susceptible to FII than people with aphantasia. Moreover, moderately-vivid imagers were more likely to see complex FII than weakly-vivid imagers, whereas people with aphantasia only experienced simple FII. People with and without imagery experienced a similar range of emotions during Ganzflicker stimulation, but people with imagery experienced more altered states of consciousness. These findings fit with recent research on the connection between visual imagery strength (specifically, the influence of imagery on perception) and visual cortical excitability. Visual imagery ability and anomalous perceptual experience may depend on the same cortical mechanism that gates effects of visual stimulation on natural cortical excitability levels. Future studies will investigate whether more fine-grained changes in cortical excitability induced by different visual flicker frequencies can modulate FII-susceptibility and FII-complexity.
DOI: 10.17632/y67kjh6g9n
title: Impact of Service Quality on Purchase Intentions with Consumer Confidence as Mediators

description: sharing data, explaining the data processing used, testing validity and reliability and results to answer research hypotheses
DOI: 10.6084/m9.figshare.13583015.v1
title: Metadata record for: COVID-CT-MD, COVID-19 computed tomography scan dataset applicable in machine learning and deep learning

description: This dataset contains key characteristics about the data described in the Data Descriptor COVID-CT-MD, COVID-19 computed tomography scan dataset applicable in machine learning and deep learning. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.29083583.v1
title: An Intuitionistic Fuzzy EDAS Evaluation of the Strategic Direction Alignment of Top Philippine Companies to SDGs Using Generative AI <b>(Supplementary Material)</b>

description: This study evaluates the alignment of corporate vision statements with the UN Sustainable Development Goals (SDGs), emphasizing the importance of strategic direction in promoting sustainability. Utilizing ChatGPT for semantic similarity and the Integrated Fuzzy (IF) MCDM method, the Distance from Average Solution (EDAS) method was applied to assess leading Philippine companies.
DOI: 10.17632/bx4tbkkjpv
title: Developing Effective Future Educational leaders: Stressing the Need for Futures Thinking Tools

description: Futures thinking is a method of developing the capacity of school and system leaders in education to function as future thinkers. We need to include education leaders in discussions about global and local trends and provide them the opportunity to debate what their desired futures might look like in response to the current societal trends. The goal is to use scenario analysis and futures thinking to help establish a group of future literate education leaders who will discuss and influence policy formulation as well as further develop performance and development practises and cultures. Strand one of a new PhD research study Future Schooling and Futures Thinking: Emerging Forms of Learning Educational and Schools’ Leaders Perspectives makes this clear and has provided many unexpected results from the data collected. The researcher aimed to understand how the system and school leaders would respond to scenarios of future schooling the scenarios as constructed in the OCED Schooling for Tomorrow scenarios, the HolonIQ five scenarios for the Future of Learning and Talent, and the Sanborn et al. Future of Education: Four Scenarios.