cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.74b7h
title: Data from: Phylogeography and support vector machine classification of colour variation in panther chameleons

description: Lizards and snakes exhibit colour variation of adaptive value for
 thermoregulation, camouflage, predator avoidance, sexual selection and
 speciation. Furcifer pardalis, the panther chameleon, is one of the most
 spectacular reptilian endemic species in Madagascar, with pronounced
 sexual dimorphism and exceptionally large intraspecific variation in male
 coloration. We perform here an integrative analysis of molecular
 phylogeography and colour variation after collecting high-resolution
 colour photographs and blood samples from 324 F. pardalis individuals in
 locations spanning the whole species distribution. First, mitochondrial
 and nuclear DNA sequence analyses uncover strong genetic structure among
 geographically restricted haplogroups, revealing limited gene flow among
 populations. Bayesian coalescent modelling suggests that most of the
 mitochondrial haplogroups could be considered as separate species. Second,
 using a supervised multiclass support vector machine approach on five
 anatomical components, we identify patterns in 3D colour space that
 efficiently predict assignment of male individuals to mitochondrial
 haplogroups. We converted the results of this analysis into a simple
 visual classification key that can assist trade managers to avoid local
 population overharvesting.
description: Data and code for
 "Phylogeography and Support Vector Machine Classification of Colour
 Variation in Panther Chameleons"The image data and
 program code (written in Python 2.7) for clustering and SVM
 classification, as well as the input files for the species delimitation
 analyses.Grbic_et_al_2015_data.zip
DOI: 10.5061/dryad.052q5
title: Data from: Global terrestrial Human Footprint maps for 1993 and 2009

description: Remotely-sensed and bottom-up survey information were compiled on eight
 variables measuring the direct and indirect human pressures on the
 environment globally in 1993 and 2009. This represents not only the most
 current information of its type, but also the first temporally-consistent
 set of Human Footprint maps. Data on human pressures were acquired or
 developed for: 1) built environments, 2) population density, 3) electric
 infrastructure, 4) crop lands, 5) pasture lands, 6) roads, 7) railways,
 and 8) navigable waterways. Pressures were then overlaid to create the
 standardized Human Footprint maps for all non-Antarctic land areas. A
 validation analysis using scored pressures from 3114×1 km2 random sample
 plots revealed strong agreement with the Human Footprint maps. We
 anticipate that the Human Footprint maps will find a range of uses as
 proxies for human disturbance of natural systems. The updated maps should
 provide an increased understanding of the human pressures that drive
 macro-ecological patterns, as well as for tracking environmental change
 and informing conservation science and application.
description: Human Footprint
 maps7-zip file including the
 Human Footprint maps for 1993 and 2009, individual pressures, and
 validation data. A full data description is included as a word file in the
 download.HumanFootprintv2.7z
DOI: 10.5061/dryad.367s2
title: Data from: Estimating quantitative genetic parameters in wild populations: a comparison of pedigree and genomic approaches

description: The estimation of quantitative genetic parameters in wild populations is
 generally limited by the accuracy and completeness of the available
 pedigree information. Using relatedness at genome-wide markers can
 potentially remove this limitation and lead to less biased and more
 precise estimates. We estimated heritability, maternal genetic effects and
 genetic correlations for body size traits in an unmanaged long-term study
 population of Soay sheep on St Kilda using three increasingly complete and
 accurate estimates of relatedness: (1) Pedigree 1, using
 observation-derived maternal links and microsatellite-derived paternal
 links; (2) Pedigree 2, using SNP-derived assignment of both maternity and
 paternity; and (3) whole-genome relatedness at 37,037 autosomal SNPs. In
 initial analyses, heritability estimates were strikingly similar for all
 three methods while standard errors were systematically lower in analyses
 based on Pedigree 2 and genomic relatedness. Genetic correlations were
 generally strong, differed little between the three estimates of
 relatedness and the standard errors declined only very slightly with
 improved relatedness information. When partitioning maternal effects into
 separate genetic and environmental components, maternal genetic effects
 found in juvenile traits increased substantially across the three
 relatedness estimates. Heritability declined compared to parallel models
 where only a maternal environment effect was fitted, suggesting that
 maternal genetic effects are confounded with direct genetic effects and
 that more accurate estimates of relatedness were better able to separate
 maternal genetic effects from direct genetic effects. We found that the
 heritability captured by SNP markers asymptoted at about half the SNPs
 available, suggesting that denser marker panels are not necessarily
 required for precise and unbiased heritability estimates. Finally, we
 present guidelines for the use of genomic relatedness in future
 quantitative genetics studies in natural populations.
description: inversepedigree1inversepedigree2grmdryad.grm.gzgrmdryadinv.grm.gzgrmdryad.grm.idbirtweightoldpedigreedryadbirtweightnewpedigreedryadskeletaldataoldpedigreedryadskeletaldatanewpedigreedryadcapturedataoldpedigreedryadcapturedatanewpedigreedryadpedigree1dryadpedigree2dryaddryadsnpdatadryadsnpdataallelefreqallsamplesREADME
DOI: 10.5061/dryad.6v1r5n8
title: Data from: Molecular characterization of aldehydes and ketones in particle phase of mainstream and sidestream cigarette smoke

description: Aldehydes and ketones (AKs) in cigarette smoke are risk to humans and
 environment. Due to the complexity of itself and the interference of the
 smoke tar matrix, the aldehydes and ketones in particle phase (AKPs) of
 mainstream smoke (MSS) and sidestream smoke (SSS) have not been well
 investigated. In this study, the AKPs of MSS and SSS were derivatized into
 polar products by reaction with Girard T reagent. The derivatives were
 isolated rapidly by column chromatography and analysed by Fourier
 transform ion cyclotron resonance mass spectrometry (FT-ICR MS). Fifteen
 species of aldehydes and ketones were detected by positive ion
 electrospray ionization (ESI) FT-ICR MS: O1–6, N1O1–4, N2O1–3 and N3O2–3.
 The total number of AKPs obtained by ESI FT-ICR MS in MSS and SSS is about
 1100 and 970, respectively. After hydrolysis, the original AKPs were
 obtained and 63 carbonyls were identified and quantified by gas
 chromatography–mass spectrometry (GCMS). The nitrogen-containing and
 high-oxygen AKPs were further characterized by Orbitrap mass spectrometry.
 Structures of compounds with high relative abundance in the mass spectrum
 were speculated (e.g. a series of degradants of cembrenediol) by
 comparison with the results of GCMS.
description: READMERaw data of GCMS,
 Orbitrap MS and FT-ICR MSThe Raw data of GCMS,
 Orbitrap MS and FT-ICR MSdata.zipFT-ICR MS and Orbitrap MS data in Excel formatdata_Excel.zip
DOI: 10.15468/dl.229ber
title: Occurrence Download

description: A dataset containing 47909422 species occurrences available in GBIF matching the query:
{
 "or" : [
 "Geometry POLYGON((15.44166 57.5605,19.26662 57.5605,19.26662 61.43117,15.44166 61.43117,15.44166 57.5605))",
 "Geometry POLYGON((15.52876 58.06164,19.16968 58.06164,19.16968 61.35342,15.52876 61.35342,15.52876 58.06164))"
 ]
}

 The dataset includes 47909422 records from 786 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001688-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hsadgm
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Poa angustifolia",
 "Year 1970-2000"
 ]
}

 The dataset includes 112 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006578-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7632dy
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((86.97214 18.89340,140.02786 18.89340,140.02786 40.10660,86.97214 40.10660,86.97214 18.89340))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Continent derived from coordinates, Coordinate rounded)",
 "Month is one of (April, January, February, March, May, June, July, August, September, October, November, December)",
 "OccurrenceStatus is Present",
 "TaxonKey is Hyla chinensis",
 "Year is 2024"
 ]
}

 The dataset includes 116 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006577-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4nd37u
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Magallana gigas"
 ]
}

 The dataset includes 145 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006576-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/d06ecf90-4974-4c9b-94a5-da21881ee9ac
title: Data underlying the paper: "Towards designing for health outcomes: implications for designers in eHealth design" Included in Chapter 4 of the PhD thesis: Integrating evidence generation in eHealth development - Bridging design and healthcare practices

description: This project investigates how health and care professionals conceptualise evidence generation about health outcomes in eHealth development. Six health and care professionals involved in the development of a remote patient monitoring system participated in semi-structured interviews in which they reflected on health outcomes, their meaning, and how evidence about them is generated in real-world settings. The interviews were audio recorded, transcribed, and analysed using reflexive thematic analysis. The dataset includes the interview protocol and the thematic structure of the results illustrated with representative quotes, and a scientific presentation used to disseminate the results.
DOI: 10.4121/d06ecf90-4974-4c9b-94a5-da21881ee9ac.v1
title: Data underlying the paper: "Towards designing for health outcomes: implications for designers in eHealth design" Included in Chapter 4 of the PhD thesis: Integrating evidence generation in eHealth development - Bridging design and healthcare practices

description: This project investigates how health and care professionals conceptualise evidence generation about health outcomes in eHealth development. Six health and care professionals involved in the development of a remote patient monitoring system participated in semi-structured interviews in which they reflected on health outcomes, their meaning, and how evidence about them is generated in real-world settings. The interviews were audio recorded, transcribed, and analysed using reflexive thematic analysis. The dataset includes the interview protocol and the thematic structure of the results illustrated with representative quotes, and a scientific presentation used to disseminate the results.
DOI: 10.4121/dbe56919-f5e2-4733-a8ef-71ece511920a
title: Data underlying the paper: "Exploring Health and Design Evidence Practices in eHealth Systems’ Development" Included in Chapter 3 of the PhD thesis: Integrating evidence generation in eHealth development - Bridging design and healthcare practices

description: This project investigates how healthcare and design professionals generate and use evidence in the development of eHealth systems. Eight professionals with experience in eHealth development participated in semi-structured interviews in which they reflected on their evidence practices across projects. The interviews were audio recorded, transcribed, and analysed using reflexive thematic analysis. The dataset includes the interview protocol and the thematic structure of the results illustrated with representative quotes, and a scientific presentation used for dissemination of the results.
DOI: 10.4121/dbe56919-f5e2-4733-a8ef-71ece511920a.v1
title: Data underlying the paper: "Exploring Health and Design Evidence Practices in eHealth Systems’ Development" Included in Chapter 3 of the PhD thesis: Integrating evidence generation in eHealth development - Bridging design and healthcare practices

description: This project investigates how healthcare and design professionals generate and use evidence in the development of eHealth systems. Eight professionals with experience in eHealth development participated in semi-structured interviews in which they reflected on their evidence practices across projects. The interviews were audio recorded, transcribed, and analysed using reflexive thematic analysis. The dataset includes the interview protocol and the thematic structure of the results illustrated with representative quotes, and a scientific presentation used for dissemination of the results.
DOI: 10.5281/zenodo.13990712
title: Direct imaging of carbohydrate stereochemistry structural dataset

description: Dataset includes. 



Training data for the NequIP model (all_4NPxG_mod_E.extxyz) including structures, energies and force components.

Zip file (4NPxG_training_run.zip) containing training parameters (config.yaml) and metrics (.csv files) and the deployed NequIP model (deployed_model.pth) used for minima hopping in the corresponding study.

Bayesian Optimization Structure Search results for conformers (alpha/beta-4-Nitrophenyl-D-Galacturonide_opt.extxyz)  and isolated adsorbates (alpha/beta_isolated_adsorbates_opt.extxyz) on Au(111). DFT relaxed structures.

CREST NADG conformers (crest_conformers_alpha.extxyz). 

Initial monolayer structure relaxations (4NPaG/4NPbG_monolayer_relaxation_every_fifth.extxyz). Every fifth geometry from the relaxation.

Results from NequIP minima hopping for monolayer structures as trajectory files (alpha/beta_minima_hopping_nequip.traj). Contains also protonated NADG structures (alpha_protonated_minima_hopping_nequip.traj).

Final NADG and NBDG monolayer structures with Hartree potentials and STM images simulated with FHI-aims (Final_NADG/NBDG_hartree_potential.cube, Final_NADG/NBDG_stm_01.cube) with the z-maps (Final_NADG/NBDG_stm_z_map.cube) for creating STM image contrast.
DOI: 10.5281/zenodo.13990711
title: Direct imaging of carbohydrate stereochemistry structural dataset

description: Dataset includes. 



Training data for the NequIP model (all_4NPxG_mod_E.extxyz) including structures, energies and force components.

Zip file (4NPxG_training_run.zip) containing training parameters (config.yaml) and metrics (.csv files) and the deployed NequIP model (deployed_model.pth) used for minima hopping in the corresponding study.

Bayesian Optimization Structure Search results for conformers (alpha/beta-4-Nitrophenyl-D-Galacturonide_opt.extxyz)  and isolated adsorbates (alpha/beta_isolated_adsorbates_opt.extxyz) on Au(111). DFT relaxed structures.

CREST NADG conformers (crest_conformers_alpha.extxyz). 

Initial monolayer structure relaxations (4NPaG/4NPbG_monolayer_relaxation_every_fifth.extxyz). Every fifth geometry from the relaxation.

Results from NequIP minima hopping for monolayer structures as trajectory files (alpha/beta_minima_hopping_nequip.traj). Contains also protonated NADG structures (alpha_protonated_minima_hopping_nequip.traj).

Final NADG and NBDG monolayer structures with Hartree potentials and STM images simulated with FHI-aims (Final_NADG/NBDG_hartree_potential.cube, Final_NADG/NBDG_stm_01.cube) with the z-maps (Final_NADG/NBDG_stm_z_map.cube) for creating STM image contrast.
DOI: 10.7910/dvn/wzrbme
title: aSimMatrix Benchmark Dataset of Intertextual Parallels

description: This is a literary dataset for evaluating pairwise semantic textual similarity (STS) tasks. It contains 41 textual parallels editorially identified by Peter Cochran in his open edition of Lord Byron’s mock epic, Don Juan (1819-24). Human-annotator similarity scores, a Similarity Matrix (metrics), Group IDs, typographical annotations and supplementary notes are included for reference.
DOI: 10.15468/dl.xyh5sn
title: Occurrence Download

description: A dataset containing 1133772 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glechoma"
 ]
}

 The dataset includes 1133772 records from 3358 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006467-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15223354
title: Fanny loves Wilhelm. Transcriptions of letters by Fanny Mendelssohn to Wilhelm Hensel

description: Overview

In 2024, the Berlin State Library and Universität der Künste (UdK) Berlin organized a seminar focused on the letters and notes exchanged between the composer and pianist Fanny Mendelssohn and her later husband, Wilhelm Hensel.

Within the seminar, the participants transcribed 122 letters by Fanny Mendelssohn contained in two folders held by the State Library Berlin.

The dataset consists of two zip-files containing the transcriptions (in PAGE, ALTO and a basic TEI format) for the two folders (see below for related digitized objects). The dataset contains transcriptions of 250 pages (some of them without text) and 2240 lines of text.

Transcription Process

The transcriptions are based on the digital images within the Digitized Collections of the Berlin State Library. Images were automatically segmented in eScriptorium using the kraken default segmentation model (blla.mlmodel). Layout analysis was then corrected manually. Transcriptions were done manually and checked for quality. During transcription, original graphemes (like long s <ſ>), abbreviations and the like where kept as is, wherever possible. 

Page and Alto files where exported from eScriptorium and additional metadata was added via XSLT. The dataset contains one (ALTO or PAGE) file per page, regardless of whether there is transcribed text on that page.

TEI files were generated via XSLT from the PAGE files. There is one TEI file per folder; individual letters are wrapped in a <div type="letter"> element.

Potential Uses

This dataset contains transcriptions of 2240 lines of text in a single hand and in German Kurrent script. It can be used to add training data for training HTR models. A specific model fine-tuned on Fanny Mendelssohn's handwriting was trained during the project and will be published separately.

The transcriptions pertain to intimate and fast-paced letters dating from 1829; potential uses include linguistic analyses of intimate correspondence and epistolary exchanges of that period.

Furthermore, the textual content of these transcriptions can help to further enhance biographical studies on Fanny Mendelssohn, her husband and family. The transcriptions, particularly the TEI files, could also be used as starting point for a digital edition or further semantic annotation of the correspondence.

Contributions

We thank all participants of the seminar for their work and transcriptions as well as Prof. Susanne Fontaine for valuable input and convening the seminar.
DOI: 10.5281/zenodo.15223355
title: Fanny loves Wilhelm. Transcriptions of letters by Fanny Mendelssohn to Wilhelm Hensel

description: Overview

In 2024, the Berlin State Library and Universität der Künste (UdK) Berlin organized a seminar focused on the letters and notes exchanged between the composer and pianist Fanny Mendelssohn and her later husband, Wilhelm Hensel.

Within the seminar, the participants transcribed 122 letters by Fanny Mendelssohn contained in two folders held by the State Library Berlin.

The dataset consists of two zip-files containing the transcriptions (in PAGE, ALTO and a basic TEI format) for the two folders (see below for related digitized objects). The dataset contains transcriptions of 250 pages (some of them without text) and 2240 lines of text.

Transcription Process

The transcriptions are based on the digital images within the Digitized Collections of the Berlin State Library. Images were automatically segmented in eScriptorium using the kraken default segmentation model (blla.mlmodel). Layout analysis was then corrected manually. Transcriptions were done manually and checked for quality. During transcription, original graphemes (like long s <ſ>), abbreviations and the like where kept as is, wherever possible. 

Page and Alto files where exported from eScriptorium and additional metadata was added via XSLT. The dataset contains one (ALTO or PAGE) file per page, regardless of whether there is transcribed text on that page.

TEI files were generated via XSLT from the PAGE files. There is one TEI file per folder; individual letters are wrapped in a <div type="letter"> element.

Potential Uses

This dataset contains transcriptions of 2240 lines of text in a single hand and in German Kurrent script. It can be used to add training data for training HTR models. A specific model fine-tuned on Fanny Mendelssohn's handwriting was trained during the project and will be published separately.

The transcriptions pertain to intimate and fast-paced letters dating from 1829; potential uses include linguistic analyses of intimate correspondence and epistolary exchanges of that period.

Furthermore, the textual content of these transcriptions can help to further enhance biographical studies on Fanny Mendelssohn, her husband and family. The transcriptions, particularly the TEI files, could also be used as starting point for a digital edition or further semantic annotation of the correspondence.

Contributions

We thank all participants of the seminar for their work and transcriptions as well as Prof. Susanne Fontaine for valuable input and convening the seminar.
DOI: 10.6084/m9.figshare.29109446
title: Herdability of Nash equilibrium in neighbour-based game control system

description: The game-based control system is composed of a regulator and underlying agents. The regulator first makes a decision, and then each agent optimises its own payoff function to reach the possible Nash equilibrium of the non-cooperative dynamic game. When the number of regulators in the system is greater than 1, the underlying agents naturally have the problem of connecting different regulators, which can be reflected in the topological structure. Therefore, this paper proposes the neighbour-based game control system (NBGCS) with multiple regulators. Then, we define the herdability of game-based systems and provide the necessary and sufficient conditions for achieving this performance. In addition, we describe the herdability by graph theory, and draw the following conclusion: when the system is herdable, the graph corresponding to the game controllability matrix is strategy-connectable.