cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dhg44d
title: Occurrence Download

description: A dataset containing 29824 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Leptinotarsa decemlineata (Say, 1824)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 29824 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082867-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.36twva
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Calodera rufescens Kraatz, 1856",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 16 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082870-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xgd6jj
title: Occurrence Download

description: A dataset containing 4882 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cedrela fissilis Vell."
 ]
}

 The dataset includes 4882 records from 249 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082872-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjbxsf
title: Occurrence Download

description: A dataset containing 29824 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Leptinotarsa decemlineata (Say, 1824)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 29824 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082871-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.jm6pj/6
title: Dataset 2 in BEAST format

description: Dataset 2 with size and stratigraphic data in BEAST xml format (plain text file).
DOI: 10.5061/dryad.m466f/1
title: README

description: Description of files in the package.
DOI: 10.5061/dryad.m466f/37
title: rubus_photos4

description: Photographs of plants at sites FCR, GTN, KLS, KVY, KRC, KNL, MCD, and PSG.  Sample IDs can be seen within the images.  Images are in .jpg format.
DOI: 10.5061/dryad.m9t12/1
title: DataACWSDsurvey.zip

description: Data S1.  All data for the analyses are contained in the zipped folder titled DataACWSDsurvey.zip.  The file contains three comma delimited data files, CluterWeightsMatrix.csv, ObservationData.csv, and TransectInformation.csv, as well as a ReadMe text file describing all data fields for each data file.
DOI: 10.5061/dryad.m9t12/8
title: Silverman_et_al_2010_Annual_Survey_Report_for_2009

description: Reference S7. Silverman E, Koneff M, Fleming K, and Wortham J. 2010. 2009 Atlantic coast wintering sea duck survey. Laurel, Maryland: U.S. Fish and Wildlife Service.
DOI: 10.5061/dryad.mt620/1
title: HECT_493seqs

description: Alignment of 493 HECT domains of proteins from 44 eukaryotic lineages. First 2-3 letters indicate the taxon (see SM), following characters indicate the accession number (depending on the database, see SM).
DOI: 10.5061/dryad.ps42h/1
title: Egg load

description: Data on tibia length and egg loads of newly emerged female Anagrus daanei collected as pupa from vineyards and riparian habitats.
DOI: 10.5061/dryad.ps42h/2
title: Egg volume

description: Data on tibia length, egg load and egg volume of females Anagrus daanei collected from vineyards and riparian habitats.
DOI: 10.5061/dryad.ps42h/3
title: Host Egg size

description: Data on egg volumes of Erythroneura elegantula leafhopper eggs collected from vineyards and riparian habitats.
DOI: 10.5061/dryad.ps42h/4
title: Leafhoppers

description: Data on the number of leafhopper eggs found on grape leaves from vineyards and riparian habitats.
DOI: 10.5061/dryad.ps42h/5
title: Longevity

description: Data on egg loads and longevity of females A. daanei collected as pupa from a vineyard.
DOI: 10.5061/dryad.qp499/1
title: Archive of data of OCT on Euphasia superba

description: This .zip file contains the OCT data used to obtain quantitative measurements and to produce 3D images.  The MATLAB cods used to rescale the data, produce movies and obtain automated estimates for physiological features are also provided.
DOI: 10.5061/dryad.r6624/3
title: gene_expression_fluidigm_four_month_old_offspring

description: Gene expression measurements of four-month-old offspring using the fluidigm method.
DOI: 10.5061/dryad.r8n7c/7
title: Reciprocal transplant

description: Reciprocal transplant data
DOI: 10.5061/dryad.s6d3k/1
title: fig1
DOI: 10.5061/dryad.s6d3k/2
title: fig.2
DOI: 10.5061/dryad.s6d3k/3
title: fig. 3
DOI: 10.5061/dryad.s6d3k/4
title: fig. 4
DOI: 10.5061/dryad.s6d3k/5
title: figS1
DOI: 10.5061/dryad.s6d3k/6
title: fig.s3
DOI: 10.5061/dryad.sk64k/5
title: IFN pgml results dryad

description: Interferon-gamma cytokine responses. Excel file from ELISA plate reader using Softmax-pro.
DOI: 10.5061/dryad.sk64k/6
title: Lesion table for bacto Dryad

description: Lesion table from histo scores. Samples collected at post-mortem. Excel file
DOI: 10.5061/dryad.sk64k/7
title: Wallaceville IFN and CFT results Dryad

description: Skin test results collected in the field. Excel file. CFT= caudal fold test.
DOI: 10.5061/dryad.tn0f3/1
title: Sycon ciliatum genome

description: Sycon ciliatum genome assembly freeze 02.08.2013. The assembly was generated using two (360bp and 530bp) paired-end libraries and several mate-pair libraries ranging from 2.0 to 9.0 kb. Assembly was performed using SOAPdenovo2 and scaffolding using SSPACE v2.2. Genomic scaffolds of sponge origin (as opposed to those derived from associated organisms) were identified by aligning the resulting assembly to reads from an Illumina sequenced library obtained from laboratory grown, eukaryotic- contamination free juveniles.
DOI: 10.5061/dryad.tn0f3/2
title: Sycon ciliatum coding sequences

description: Sycon ciliatum coding sequences. De-novo assembly of transcriptome and identification of coding sequences was performed with Trinity pipeline using an extensive collection of RNA-Seq libraries derived from larvae, juveniles, non-reproductive adults, adults containing oocytes and embryos, and regenerating adult tissue. The coding sequences were aligned on the Sycon ciliatum genome to identify genes and sort out sequences of non-sponge origin.
DOI: 10.5061/dryad.tn0f3/3
title: Sycon ciliatum proteins

description: Sycon ciliatum proteins, translations of Sycon ciliatum coding sequences.
DOI: 10.5061/dryad.tn0f3/4
title: Leucosolenia complicata coding sequences

description: Leucosolenia complicata coding sequences. De-novo assembly of transcriptome and identification of coding sequences was performed with Trinity pipeline using RNA-Seq libraries derived from adult tissues containing oocytes and a variety of embryonic stages. Leucosolenia 'genes' were artificially created without use of a genome, by clustering of coding sequences sharing identical fragments.
DOI: 10.5061/dryad.tn0f3/5
title: Leucosolenia complicata proteins

description: Leucosolenia complicata proteins, translations of Leucosolenia complicata coding sequences.
DOI: 10.5061/dryad.vq587/5
title: FBbt_obo_file

description: Ontology OBO file version for the fruit fly (Drosophila melanogaster) used during the matching process.
DOI: 10.5061/dryad.00317/1
title: Distance matrices

description: The file contains all data matrices used in the study.
DOI: 10.5061/dryad.0520f/1
title: Fulmarini_PhasedNuclearHaplotypes

description: Multiple sequence alignment of melanocortin-1 receptor (MC1R) and myoglobin intron II (MYOII) DNA sequences from Fulmarus glacialis and closely allied species. Sequences were phased either: i) in silico using the program PHASE version 2.1, or ii) via cloning using the TOPO TA Cloning kit (Invitrogen). The file is in NEXUS format.
DOI: 10.5061/dryad.17bn1/5
title: ASU_Acar_v2.1.cDNA.fa.gz -- A fasta file of the cDNA sequences for each gene transcript in ASU_Acar_v2.1
DOI: 10.5061/dryad.1k1ns/1
title: Legionella pneumophila Philadelphia-1 clinical genome (GenBank format)

description: GenBank formatted file derived from editing NC_002942 (Legionella pneumophila subsp. pneumophila str. Philadelphia 1). Corrects several discrepancies between the 1976 Philadelphia isolate given to the Isberg laboratory by Barry Fields and the original sequence.
DOI: 10.5061/dryad.35h8v/3
title: Dubuis et al. - Processed_Profiles

description: Each file contains the source data for gap gene (Hb, Kr, Gt, Kni) processed dorsal gene expression levels measured using immunofluorescence techniques in 23 Drosophila embryos with FC depth comprised between 10 and 20 microns. We only selected embryos that were imaged close to their midsagittal plane (Orientation '1'). Column 1 contains the embryo number referring to its position on the slide (see Images.zip). Column 2 contains an information about the azimuthal orientation of the embryo on the slide ('1' if the confocal plane is closer to midsagittal plane, '2' if it is closer to the coronal plane). Column 3 contains the furrow canal depth (delta_FC) measured in micrometers. Column 4 contains the corresponding estimated age in minutes. Columns 5 to 1004 contain a 1x1000 vector representing the dorsal time-corrected gene expression level of the gap gene (Hb, Kr, Gt, Kni) in the embryo. The 1000 points are equally spaced along the AP axis. Thus, g345 represents the gene expression level at 34.5%EL. NaN means that we coudn't reliably detect the profile intensity at that position (usually near the edges). Columns 1-4 are identical in the four files.
DOI: 10.5061/dryad.39sc7/2
title: mec12-0761_DRYAD entry
DOI: 10.5061/dryad.3g19f/1
title: Data_files

description: Data of 454 sequencing, phenotypes, Kaspar analysis, qPCR analysis for all experiments used in manuscript
DOI: 10.5061/dryad.56kf4/1
title: Interactive animated 3D reconstruction of the metacoxal joint of Trigonopterus oblongus

description: Click on the figure to start interactive 3D view; switch between views by using the menu (Adobe Reader 8.1 or higher required).
DOI: 10.5061/dryad.56kf4/2
title: Interactive animated 3D reconstruction of Trigonopterus vandekampi simulating the movements from walking position to thanatosis posture

description: Default views illustrating the blocking mechanisms are provided. Click on the figure to start interactive 3D view; switch between views by using the menu (Adobe Reader 8.1 or higher required).
DOI: 10.5061/dryad.624k0/1
title: Ecological and Microsatellite data

description: This tab-delimited file contains all the allele scores for 869 samples across 13 microsatellites, along with the relevant demographic data.
DOI: 10.5061/dryad.65364/1
title: Figure 1-Source Data 1

description: TMT and SILAC proteome
DOI: 10.5061/dryad.65364/2
title: Figure 2-Source Data 1

description: Transcriptome of aneuploid cells
DOI: 10.5061/dryad.65364/3
title: Figure 3-Source Data 1

description: Footprinting of disome V
DOI: 10.5061/dryad.65364/4
title: Figure 5-Source Data 1

description: Macromolecular Complexes in aneuploid cells
DOI: 10.5061/dryad.65364/5
title: Figure 6-Source Data 1

description: Aneuploid protein response
DOI: 10.5061/dryad.65364/6
title: Figure 7-Source Data 1

description: Proteome of disomes harboring the UBP6 deletion
DOI: 10.5061/dryad.65364/7
title: Figure 8-Source Data 1

description: Strains utilized
DOI: 10.5061/dryad.65364/8
title: Figure 4-Source Data 1

description: Protein abundance of WT, disome II and disome V upon inhibition of protein turnover pathways
DOI: 10.5061/dryad.6bt6k/1
title: Ord_TJ-ANBEH-D-12-00933R1_readme
DOI: 10.5061/dryad.6cq0n/1
title: ArtificialSelectionExsertion

description: Trait and pedigree information for 8 or 9 generations of selection
DOI: 10.5061/dryad.6cq0n/2
title: CorrelatedResponses

description: Data for many traits after 5 or 6 generations of selection
DOI: 10.5061/dryad.6h3f7/3
title: Body mass data
DOI: 10.5061/dryad.76dc8/8
title: Export sites shape file .shx

description: This .shx file supports the Export Sites .shp file that shows the centroids of the additionally sampled sites for parentage analysis.
DOI: 10.5061/dryad.81537/1
title: Vectors of faunal movement, Western Hemisphere
DOI: 10.5061/dryad.8q6n4/14
title: Blount et al Nat 2012 fig 6d transformed
DOI: 10.5061/dryad.8q6n4/15
title: Blount et al Nat 2012 sup fig 3 raw
DOI: 10.5061/dryad.8q6n4/16
title: Blount et al Nat 2012 sup fig 3 transformed
DOI: 10.5061/dryad.8q6n4/17
title: Blount et al Nat 2012 sup fig 5 set 1 raw
DOI: 10.5061/dryad.8q6n4/18
title: Blount et al Nat 2012 sup fig 5 set 1 transformed
DOI: 10.5061/dryad.8q6n4/19
title: Blount et al Nat 2012 sup fig 5 set 2 raw
DOI: 10.5061/dryad.b1q2n/2
title: 120308b_2.pda

description: File: 120308b_2.pdaFormat: SoftMax Pro 5.42.1.0 (Molecular Devices, Sunnyvale, CA)Contents: Measurements of optical density of bacterial cultures. Rows A-D contain cultures of E. coli lambda, rows E-H contain cultures of E. coli HK97. Columns 1 and 2 contain uninfected cultures. Columns 3-11 contain cultures that were infected with 5x10^0 - 5x10^8 pfu of phage T4rII. Column 12 contains blanks (medium only).
DOI: 10.5061/dryad.b1q2n/3
title: 120308b_2.txt

description: File: 120308b_2.txtFormat: textContents Measurements of optical density of bacterial culturesNote: Same data as in file 120308b_2.pda
DOI: 10.5061/dryad.b5d6b/1
title: AFLP Data:  Phylogeography of Heliconius cydno and its closest relatives- disentangling their origin and diversification

description: Arlequin data file with 2257 polymorphic AFLP loci for 194 individuals representing H. cydno, H. timareta and H. melpomene radiation.
DOI: 10.5061/dryad.df47h/1
title: Genotyping data using molecular markers

description: This file contains the genotype data generated using single nucleotide polymorphism (SNP) and simple sequence repeat (SSR) markers.
DOI: 10.5061/dryad.h04hr/1
title: 21 MHC Class II DRB alleles from Microtus montanus

description: FASTA file of 21 MHC Class II Mimo-DRB alleles recovered from a wild population of montane vole (Microtus montanus).  Samples were obtained between 2008-2010 near the Rocky Mountain biological Laboratory, located in the Upper East River Valley, CO (39N, 107W).
DOI: 10.5061/dryad.j3r20/3
title: Nest density data
DOI: 10.5061/dryad.k37m7/1
title: ITS1_UNITE

description: Its1 sequences of UNITE accessioned fungi.
DOI: 10.5061/dryad.k37m7/2
title: ITS2_UNITE

description: ITS2 sequences of UNITE accessioned fungi
DOI: 10.5061/dryad.k77nh/3
title: De-multiplexing Functions

description: Functions in R for de-multiplexing (assigning sample identify for each read using the sequence barcode at the beginning of the read) the raw sequencing data. The raw data itself is stored on the NCBI SRA
DOI: 10.5061/dryad.k77nh/6
title: Diploid Genotypes

description: Tab-delimited file for the diploid genotypes.
DOI: 10.5061/dryad.k77nh/7
title: Pseudo-haploid genotypes

description: Tab-delimited file with the pseudo-haploid genotypes used for analysis.
DOI: 10.5061/dryad.k77nh/8
title: Barcode Information for Sequencing Libraries

description: Example of a tab-delimited table containing the information to connect barcodes to samples in different sequencing libraries. This can be used in conjunction with the R functions to de-multiplex the raw data.
DOI: 10.5061/dryad.k77nh/9
title: Sample Metadata

description: Metadata for the samples. Includes sample name, population, ploidy, phenotype, sequencing read count, and inferred gene pool.
DOI: 10.5061/dryad.nc221/1
title: R.oldhamii SSR for MSA

description: microsatellite datafor18 populations samples of Rhododendron oldhamii
DOI: 10.5061/dryad.pt22p/1
title: Egg data by egg
DOI: 10.5061/dryad.pt354/1
title: ECS_DRYAD
DOI: 10.5061/dryad.q824f/1
title: Chorus_vs_Solo Chirp period

description: The Chirp period (CP) of males either attending a small chorus consisting of four males and the average chirp period of the same males singing in isolation.
DOI: 10.5061/dryad.q824f/2
title: Mean time lag of males attending a chorus

description: The time difference of chirps produced in a small chorus consisting of 4 males. Relative time differences were calculated by taking the leader signal as reference. Data is shown in Figure 2.
DOI: 10.5061/dryad.q824f/3
title: Signal amplitude in a Chorus

description: The sound recording of the central microphone in small choruses consisting of four males was evaluated using a Spike2 macro. The rms and maximum amplitude values of either solo singing males and signals produced by four males simultaneously are shown in this table. Data is shown in Fig. 4B
DOI: 10.5061/dryad.q824f/4
title: Correlation between mean time lag, signal amplitude and signal duration

description: A macro was used to evaluate the timing and signal amplitude of four males acoustically interacting in a chorus. Recording channel 2 - 5 contains the evaluation of microphone recordings of individual males. Channel 6 refers to the evaluation of the microphone positioned in the middle of the chorus. CP = chirp period. This data was used to correlate the average time difference between individual signals with the signal amplitude recorded by the central microphone (shown in figure 4C). This data was also used to calculate the correlation of the time lag of chirps produced by male individuals with the duration of their chirps (Figure 5).
DOI: 10.5061/dryad.q824f/5
title: Simulation results: Active space of simulated males

description: A Netlogo simulation was run to simulate the broadcast area of senders by taking the hearing threshold of receivers into account (active space). The extension of the broadcast area of simultaneously active senders with the same intensity is given as the percentage of active space relative to the active space of a lone singing male. Per capita male mating possibilities were calculated by assuming three different densities of equally distributed females. Data is shown in figure 6
DOI: 10.5061/dryad.q824f/6
title: Female phonotaxis in two-choice trials

description: Females given the possibility to approach either the left or right speaker simultaneously broadcasting different song models. Different chirp periods (CP) were presented simultaneously from different directions. Furthermore, identical song models were presented with a time lag of 70 ms and 140 ms. Data are summarized in figure 7
DOI: 10.5061/dryad.q824f/7
title: Phonotaxis and female motivation: CP 1.0s vs 2.0s

description: Mecopoda elongata females were given the possibility to approach one of two speakers. One is broadcasting a song model with a chirp period (CP) of 1.0 s and the other a song model with a CP of 2.0 s. Data show female choices and how often females were motivated to approach either speaker. A data summary of female motivation is shown in Fig. 7B
DOI: 10.5061/dryad.q824f/8
title: Female motivation to perform phonotaxis in two-choice trials

description: Mecopoda elongata females were given the possibility to approach either of two speakers broadcasting different song models differing in chirp period (CP) or signal timing (time lag of 70 ms or 140 ms). The motivation of females to approach any speaker was evaluated and is summarized in Fig. 7B
DOI: 10.5061/dryad.q824f/9
title: Mate choice in four male choruses

description: Females were given the choice to select a male among small choruses consisting of four simultaneously singing males. Females were released in the middle of the chorus and the chirps produced by males during phonotaxis were recorded and evaluated with the help of a Spike2 macro. Signal timing and signal duration was evaluated and summarized in this table. Based on this data it was possible to figure out signal parameters of selected males. Data are shown in figure 8.
DOI: 10.5061/dryad.r6624/4
title: gene_expresssion_qpcr_four_month_offspring

description: Gene expression measurement of four-month-old offspring using quantitative PCR method.
DOI: 10.5061/dryad.s587t/1
title: Meloro_etal_Paleobiology_Supplementary_R2
DOI: 10.5061/dryad.s5c8k/3
title: Growing Season Microclimates

description: Hourly measurements of air temperature, humidity, photosynthetically active radiation, rain, soil temperature and soil water content at each of the sites between early June and late September of the 2010 and 2011 growing seasons.
DOI: 10.5061/dryad.sb432/1
title: blub pop resids for avdiam

description: SAS code to perform the analysis of BLUPs for root architecture measurements.
DOI: 10.5061/dryad.t68f3/1
title: LittorinaSaxatilis_AFLPs
DOI: 10.5061/dryad.t8q7t/3
title: Function for calculating the likelihood

description: Used for maximum likelihood estimation of somatic mutation parameters.
DOI: 10.5061/dryad.0rc67/1
title: mgr-escape-and-sector-data

description: MGR, escape and sector data
DOI: 10.5061/dryad.11504/1
title: Complete data and R analysis scripts

description: Laboratory study
DOI: 10.5061/dryad.13f18/1
title: Etest Tetracycline
DOI: 10.5061/dryad.13f18/2
title: KBDD Tetracycline and Neomycin
DOI: 10.5061/dryad.13f18/3
title: Conjugation rates
DOI: 10.5061/dryad.13f18/4
title: Glucose and Maltose Fitness
DOI: 10.5061/dryad.2gr06/1
title: QG of male and female genitalia

description: Column headings are self-explaining and can be easily connected to main text.
DOI: 10.5061/dryad.2sf64/1
title: mate choice trial data

description: All data recorded from 57 mate choice trails, reported and analyzed in the referenced article. (See ReadMe file for guide to column headings and classifications).
DOI: 10.5061/dryad.34jb6/5
title: 1980-DashShortNotes

description: Example of a 1982 Dash + short note song (.wav format, 16 bit, 44 kHz)
DOI: 10.5061/dryad.55724/2
title: Experiment_2

description: Binary choice assay in which flies were given unrestricted access to two different foodstuffs. Individual level consumption of protein and carbohydrates (labeled here as Pcons and Ccons) were estimated.  Which inbred line (IL) and replicate vial (Vial) the fly came from, and the fly's sex was also recorder.
DOI: 10.5061/dryad.58c73/1
title: FA_L1_RA_Comparison

description: Measures of Diffusion paramerers (FA, RD, AD, ADC..) following lateral fluid percussion injury to the forebrain (n=5) and hindbrain (n=8) cortex. Statistical differences between 150 brain regions comparing values between the affected ipsilateral side (right) and the contralateral side (left) are rank order for significance. Values are presented as the mean and standard deviation (SD). Areas shown in blue are common to both sites of cortical injury. Arrows denote the direction of the difference between the affected and control sides.
DOI: 10.5061/dryad.58c73/2
title: Rostral_TBI.tar

description: Raw and Analyzed DTI data
DOI: 10.5061/dryad.58c73/3
title: Caudal_TBI.tar

description: Raw and Analyzed DTI data of Caudal Insult.
DOI: 10.5061/dryad.62ck3/1
title: Morganucodon mandible CT slice video
DOI: 10.5061/dryad.6cq0n/3
title: 2001FieldFlowerMeas

description: Floral traits measured repeatedly across the life of the plants
DOI: 10.5061/dryad.6cq0n/4
title: QTLParentalMeasurements

description: Trait measurements for the parental generation of the mapping population