cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.3mf68/1
title: Jackal demographic and reproduction data

description: Data used for the analyses of demographic and reproduction of jackals on hunted farms and unmanaged reserves. Data include: Treatment, age class, sex, body condition indices (body mass and renal fat index), and female reproduction parameters (pregnant, lactating, litter size, fecundity).
DOI: 10.5061/dryad.3mf68/2
title: Jackal foetus data

description: Data used for the analyses of female reproduction of jackals on hunted farms and unmanaged reserves. Data include: Treatment, number of foetuses per female, and sex of foetus.
DOI: 10.5061/dryad.6g8t8/1
title: Pedigree and life history data
DOI: 10.5061/dryad.6h4t2/1
title: Data for social transmission analysis

description: Description of Dryad Data FileThe .RData file contains the following objects1) “all.individuals” gives the identity (unique PIT tag number) of all detected individuals and which species they belong to2) “patch.times” gives the time of detection of individuals at the ephemeral food patches (discovery feeders) along with the unit number and replica number of that detection3) “group_by_individual” gives the matrix denoting which individuals were detected in which flocks at the selective feeding stations. The columns give the individuals, the rows give the number of the group4) “groups_info” gives information on each detected group (rows corresponding to group_by_individual). This includes the start and stop times, as well as the unit it was detected at. The “allows.odds” column denotes whether or not this unit was programmed to only allow access to birds with odd numbered pit tags during the experiment (note: FALSE during the experiment means that this feeder only allowed birds with even numbered PIT tags). The “experiment.phase” denotes the phrase of the experiment (either “pre” manipulation or “during” the manipulation).
DOI: 10.5061/dryad.719cn/1
title: BloodFlow
DOI: 10.5061/dryad.7cs0p.2
title: Data from: Dealing with uncertainty in landscape genetic resistance models: a case of three co-occurring marsupials
DOI: 10.5061/dryad.7h480/1
title: ground-disturbance-rates

description: Rates of feral pig ground disturbance from the Waitakere Ranges, Auckland, New Zealand. Taken from yearly monitoring of disturbance transects from 2008-2011
DOI: 10.5061/dryad.7h480/2
title: cull-data

description: Kill data from hunting operations (n = 9; August 2008−2011) that occurred at approximately 6-month intervals over the first 18 months of the study (3 operations), then at 3-month intervals (6 operations).
DOI: 10.5061/dryad.7h480/3
title: transect-disturbance

description: The percentage of ground disturbed by feral pigs along each (arbitrarily named A-W) 200m ground disturbance monitoring transect.Transects were monitored four times (November 2008, September 2009, December 2010 and August 2011)
DOI: 10.5061/dryad.7nh16/1
title: All data naturally mated queens of different ages

description: This file contains data collected from the group of naturally mated queens of different ages used in this experiment. Both the raw data on sperm use per egg and sperm number stored in the spermatheca, as well as the processed data that underlie the figures and model calculations are included in this file.
DOI: 10.5061/dryad.7nh16/2
title: All data artificially inseminated queens of similar age

description: This file contains data collected from the group of artificially inseminated queens of similar age (just after hatching) used in this experiment. Both the raw data on sperm use per egg and sperm number stored in the spermatheca, as well as the processed data that underlie the figures and model calculations are included in this file.
DOI: 10.5061/dryad.8s2p3/1
title: Data
DOI: 10.5061/dryad.8s58v/1
title: Rarity index and functional traits for stream fishes, rainforest trees and birds.

description: This file contains all data needed to reproduce the study, including the values of rarity metrics (i.e. local abundance, geographic range, habitat breadth, and the integrative measure of rarity vs. commonness - RIi) and functional traits for each species (i.e. 395 stream fish from the Brazilian Amazon, 262 rainforest trees from French Guiana, and 86 birds from the Australian Wet Tropics). The file also includes data on species presence/absence across local assemblages. Description of abbreviations are provided as a metadata sheet.
DOI: 10.5061/dryad.8v2d0/33
title: C7_1

description: Healthy control sample 7 technical replicate 1
DOI: 10.5061/dryad.8v2d0/34
title: C7_2

description: Healthy control sample 7 technical replicate 2
DOI: 10.5061/dryad.8v2d0/35
title: C8_1

description: Healthy control sample 8 technical replicate 1
DOI: 10.5061/dryad.8v2d0/36
title: C8_2

description: Healthy control sample 8 technical replicate 2
DOI: 10.5061/dryad.8v2d0/37
title: C9_1

description: Healthy control sample 9 technical replicate 1
DOI: 10.5061/dryad.8v2d0/38
title: C9_2

description: Healthy control sample 9 technical replicate 2
DOI: 10.5061/dryad.8v2d0/39
title: C10_1

description: Healthy control sample 10 technical replicate 1
DOI: 10.5061/dryad.8v2d0/40
title: C10_2

description: Healthy control sample 10 technical replicate 2
DOI: 10.5061/dryad.b15bh/4
title: Readme
DOI: 10.5061/dryad.f3r35/1
title: Pabies1.0-all.phase.changed.gff3

description: gene feature format (gff3) file from Picea abies v1.0 with phase information
DOI: 10.5061/dryad.g7805/6
title: Monoculture simulation 1 rep
DOI: 10.5061/dryad.kh6j6/1
title: DaskinRawData_160225

description: Raw data extracted from each reviewed publication. See Readme file for complete documentation.
DOI: 10.5061/dryad.kh6j6/2
title: SpatialWeightsMatrix_151224

description: Spatial weight matrix for the spatial auto-correlation corrections used in meta-regressions. Row and column headers correspond to "Productivity.Location" in DaskinRawData_160225.csv and indicate the location of reviewed studies.
DOI: 10.5061/dryad.nk707/3
title: IndBasedModel_Extrinsic

description: Data for Figure 2
DOI: 10.5061/dryad.nk707/4
title: IndBasedModel_EcoEvo

description: Data for Figure 2
DOI: 10.5061/dryad.nk707/5
title: ChemostatData

description: Data used in Figures 3-5 and SI
DOI: 10.5061/dryad.nk707/6
title: FitnessData

description: Data for Figure 4
DOI: 10.5061/dryad.nk707/7
title: SexRateData

description: Data for Figure 5
DOI: 10.5061/dryad.qc264/1
title: Areas of watersheds, burn areas, and riparian zones

description: Summary data table of watershed areas, riparian zone areas, and burn areas for each of the study years.
DOI: 10.5061/dryad.qc264/2
title: Water Chemistry Data

description: Data for years 2009-2013 at Osage Prairie, Missouri. Variables include: ammonium, nitrate, total nitrogen, total phosphorus, soluble reactive phosphorus, total suspended solids, organic suspended solids, inorganic suspended solids and metabolism (gross primary production, community respiration, and net ecosystem production).
DOI: 10.5061/dryad.qc264/3
title: Cattle Positions in ArcGIS

description: Raw data files for ArcGIS analysis of cattle location position in 4 watersheds at Osage Prairie.
DOI: 10.5061/dryad.s43f8.1
title: Data from: Geomolecular dating and the origin of placental mammals
DOI: 10.5061/dryad.s43f8.2
title: Data from: Geomolecular dating and the origin of placental mammals
DOI: 10.5061/dryad.s43f8.2/1.2
title: Philllips Geomolecular Dating SI

description: Fossil calibration sourcesAlternative Phylogenetic treesAnalysis conditions and supplemental resultsFigures S1-S2Tables S1-S2
DOI: 10.5061/dryad.sv164/1
title: Combined five-marker DNA dataset of Thespesia and related genera

description: This file contains the concatenated five-marker (matK/trnK, ndhF, rpl16, ITS and CesA1) dataset in nexus format.
DOI: 10.5061/dryad.t39q6.1
title: Data from: Northern Bobwhite (Colinus virginianus) mitochondrial population genomics reveals structure, divergence, and evidence for heteroplasmy
DOI: 10.5061/dryad.t39q6.2/3.2
title: Scaled Quail Mitogenome Reads-Illumina_PE

description: Illumina mitogenome PE reads for one wild scaled quail.
DOI: 10.5061/dryad.t39q6.2/5.2
title: Quail Mitogenome Alignment For RAxML Tree

description: Quail Mitogenome Alignment For RAxML Tree (nexus)
DOI: 10.5061/dryad.t39q6.2/6.2
title: Bobwhite Mitogenome Alignment_IDs

description: Bobwhite mitogenome alignment (nexus file) with individual IDs that match the RAxML tree and alignment file.
DOI: 10.5061/dryad.td03h/1
title: North_Video_Frames

description: Video frames for the North Cave, grouped into folders by day
DOI: 10.5061/dryad.td03h/2
title: North_Acoustic_Files_a

description: North Cave Acoustic Files: First half of experimental days
DOI: 10.5061/dryad.td03h/3
title: North_Acoustic_Files_b

description: North Cave Acoustic Files: Second Half of Experimental Days
DOI: 10.5061/dryad.td03h/4
title: South_Video_Frames

description: Video frames for the South Cave, grouped into folders by day
DOI: 10.5061/dryad.tj45p/1
title: Wing images

description: This file is a .zip archive containing images of wings from butterflies with presumptive spalt and Distal-less mosaic gene deletion phenotypes. A reference table is included.
DOI: 10.5061/dryad.v1885/1
title: Data_Altermatt&Ebert_2016_BiologyLetters

description: The table gives the location where larvae were sampled, the family assignement, information if the population was in a light-polluted area or in a dark-sky area. For both males and female moths, the number of indiviudals attracted to light vs. not-attracted is given.
DOI: 10.5061/dryad.11b20/1
title: Dog_Phenotypes

description: For each Gordon setter and English setter; information on symmetrical onychomadesis disease status, gender, nationality and DLA class II haplotypes is given.
DOI: 10.5061/dryad.11b20/2
title: Dogs .ped file

description: The nucleotide variant is given at each marker on the 170K CanineHD BeadChip (Illumina), for each Gordon setter and English setter.
DOI: 10.5061/dryad.11b20/3
title: Dogs .map file

description: Singel nucleotide polymorphism locations are given according to the Canfam 3.1assembly.
DOI: 10.5061/dryad.1qj22/1
title: MacMillan et al Biol Lett - D.subobscura data archive

description: An excel file containing all of the phenotypic and physiological data presented in the manuscript.
DOI: 10.5061/dryad.1qq64/1
title: Interception data for "Corruption, development and governance indicators predict invasive species risk from trade"

description: This data file contains three sheets - "Vegetable Pathway", "Timber Pathway" and "Vehicle Pathway". 	
Details on pathways are described in the ESM of the main manuscript.  	
	
Governance indicator scores were obtained from the World Bank World Governance Indicators (WGI) database (www.govindicators.org)	
Development indicator scores were obtained from the World Bank Development Indicators database (http://data.worldbank.org/indicator)	
The meanings of the columns within each sheet are as follows:	
	
Country:	Country of commodity origin
Year: 	Year in which interception of non-native species occurred 
Total trade:	Total trade in the selected pathway. Pathways are described in the ESM of the main manuscript.  
Total detections:	Total detections in the defined pathway each year
G_voice:	Governance indicator of Voice and Accountability
G_stability:	Governance indicator of Political Stability and Freedom from Violence
G_effective:	Governance indicator of Government Effectivenss
G_regulator:	Governance indicator of Regulatory Quality
G_law:	Governance indicator of Rule of Law
G_corruption:	Governance indicator of Control of Corruption
D_agri:	Development indicator of Agricultural land (% of land area)
D_export:	Development indicator of Exports of goods and services (% of GDP)
D_forest:	Development indicator of Forest area (% of forest area)
D_GDP:	Development indicator of Gross domestic product
	
These Governance and Development indicator scores are further described in Table 1 of the main manuscript. 	
	
Ministry for Primary Industries 	
New Zealand's Ministry for Primary Industries provided  access to the data on an ‘as is’ basis.  MPI does not warrant as to the quality, accuracy or completeness of the data.  MPI or any original data creator does not accept liability for any damages, whether direct or indirect, resulting from the use of the data. The data were obtained from the Data Analysis Team's (Analysis and Profiling Group, Border Standards Directorate, MAFBNZ) "Interception Database" and the MAF Quantum Database. Data includes only border interceptions.
DOI: 10.5061/dryad.22p7r/1
title: Banc d'Arguin - Masterfile

description: This file contains the trophic and non-trophic interaction data from all sampling stations (bare, colonising and established) at Banc d'Arguin (seagrass meadows).
DOI: 10.5061/dryad.22p7r/2
title: Banc d'Arguin - Food webs with habitat modification effects by crabs removed

description: This file contains all matrices from which we removed species dependent on habitat modification by crabs.
DOI: 10.5061/dryad.22p7r/3
title: Banc d'Arguin - Food webs with habitat modification effects by seagrass removed

description: This file contains matrices from which we removed species dependent on habitat modification by seagrass.
DOI: 10.5061/dryad.22p7r/4
title: Banc d'Arguin - Food webs with trophic effects by crabs removed

description: This file contains matrices from which we removed the burrowing crab (Callinectes) and any species and species exclusively feeding on it.
DOI: 10.5061/dryad.22p7r/5
title: Banc d'Arguin - Food webs with trophic effects by seagrass removed

description: This file contains matrices from which we we removed seagrass (Zostra noltii) and any species exclusively feeding on it.
DOI: 10.5061/dryad.22p7r/6
title: Banc d'Arguin - Food webs with trophic effects by the most highly connected species removed

description: This file contains matrices from which we removed the most highly connected species and any species exclusively feeding on it.
DOI: 10.5061/dryad.22p7r/7
title: Banc d'Arguin - Relative effects of habitat modifiers and the most highly connected species

description: File summarising the relative effects of non-trophic facilitation by habitat modifiers and trophic effects by the most highly connected species on food web metrics.
DOI: 10.5061/dryad.40494/1
title: Intact replicate 1_after reagent
DOI: 10.5061/dryad.40494/2
title: Intact replicate 1_prior to reagent

description: Tiff files from time-lapse movie acquired during blebbistatin treatment of intact stolon tip
DOI: 10.5061/dryad.40494/3
title: Intact replicate 1_recovery

description: tiff images from period of film following clearance of blebbistatin
DOI: 10.5061/dryad.40494/4
title: Intact replicate 2_prior to reagent
DOI: 10.5061/dryad.40494/5
title: Intact replicate 2_after reagent
DOI: 10.5061/dryad.7cs0p.2/10.2
title: P.brev_GenepopInput

description: Microsatellite datafile in genepop format  - P.breviceps
DOI: 10.5061/dryad.7cs0p.2/11.2
title: P.norf_GenepopInput

description: Microsatellite datafile in genepop format  - P.norfolcensis
DOI: 10.5061/dryad.7cs0p.2/12.2
title: makeFPCrasters

description: R code to make raster files for %FPC for resistance calculation
DOI: 10.5061/dryad.7cs0p.2/13.2
title: makeFPCLCrasters

description: R code to make rasterfiles for %FPC+LC for resistance modeling
DOI: 10.5061/dryad.7cs0p.2/3.2
title: A.flav_coords

description: Sample geographic coordinates for A. flavipes
DOI: 10.5061/dryad.7cs0p.2/4.2
title: P_norf_coords

description: Sample coordinates for P. norfolcensis in latitude and longitude
DOI: 10.5061/dryad.7cs0p.2/7.2
title: Roussets_matrix_P. brev

description: Genetic distance matrix for P. breviceps (Roussets' a)
DOI: 10.5061/dryad.7cs0p.2/8.2
title: Roussets_matrix_P.norf

description: Genetic distance matrix for P. norfolcensis (Rousset's a)
DOI: 10.5061/dryad.7cs0p.2/9.2
title: A.flav_GenepopInput

description: Microsatellite datafile in genepop format  - A.flavipes
DOI: 10.5061/dryad.7v67c/1
title: Rapkin et al_JEB-2015-00624

description: Standardized data from the no-choice experiment and raw data from the choice experiment
DOI: 10.5061/dryad.8s2p3/2
title: Tree_sample
DOI: 10.5061/dryad.9h9q2/1
title: Worldview-2 image for Le Cesine site acquired on 2013-06-18

description: Worldview-2 satellite image for Le Cesine site acquired on 2013-06-18. RGB-Visible composition. Spatial Resolution: 2 meters. - VHR satellite data were provided through the European Space Agency  (ESA) Data Warehouse Policy within the framework of the FP7/SPA.2010.1.1-04 EU project titled "BIOdiversity multi-source monitoring system: from Space tO Species (BIO_SOS)", www.biosos.eu -
DOI: 10.5061/dryad.9n44q/1
title: PLoS One Spreadsheet Data

description: Tab 1 displays the bin contents (where each item from each participant ended up). This data was used for the "Accuracy" and "Bin Contents" analyses. Tab 2 displays the coding results of the two coders from the current experiment. This data was used for the "Receptacles used" and "Time spent at receptacles" analyses. Tab 3 displays the coding results of the two coders from the observational data in Wu et al. (2013). This data was used for the "Time spent at receptacles" analyses.
DOI: 10.5061/dryad.b4t60/1
title: Behavioral and Sleep Data

description: Data are related to associated tab names in the manuscript and supplemental information. Groups are numbered as follow (1: Cond-NREM2; 2: Cond-REM; 3: NoCond).
DOI: 10.5061/dryad.bm4nd/1
title: transcriptome-­based gene models (LmTGM)

description: Transcriptome-­based gene models for Lissotriton montandoni
DOI: 10.5061/dryad.bm4nd/2
title: L. vulgaris & L. montandoni SNPs (VCF format)

description: Variant (SNP) data obtained by mapping (with bowtie2) 6 samples of Lissotriton montandoni (Lm) and 6 samples of Lissotriton vulgaris (Lv) to transcriptome-based gene models of Lm, and next by SNP calling process in Samtools. Data are in Variant Call Format (VCF).
DOI: 10.5061/dryad.dv56j/1
title: Figure 3-source data 1
DOI: 10.5061/dryad.f3r35/2
title: cont_plastids_mito_plants_ribosome_dna

description: chloroplast genomes, mitochondrial genomes and ribosomal DNA sequences for NGS data filtering combined and obtained from NCBI
DOI: 10.5061/dryad.g81h3/1
title: Varao-Sousa & Kingstone - Memory for Lectures data
DOI: 10.5061/dryad.g8723/2
title: Final Public data

description: Phenotypic distances among 5 morphs and 5 intemrediate phenotypes of Heliconius numata and correspondent rate of attack on the 10 morphs by natural predators. See comments on the upper row cells.
DOI: 10.5061/dryad.hh76j/1
title: Rolo et al Data

description: This data set includes herbaceous species abundances and yield production recorded in 50 fields within nine farms of central-western Spain. Farms were located along a gradient of semi-natural features cover.
DOI: 10.5061/dryad.j5n06/1
title: piranga_snps.structure

description: SNPs from restriction-site associated DNA sequencing in STRUCTURE format.
DOI: 10.5061/dryad.j5n06/2
title: uce_nexus

description: Nexus files of all target capture UCE sequences used in this study.
DOI: 10.5061/dryad.j5n06/3
title: uce_beast

description: Output of one replicate of *BEAST species tree analyses for the UCE dataset. Three .trees files for the three UCE datasets: complete, only including 10 or more parsimony informative sites, and only including 20 or more parsimony informative sites.
DOI: 10.5061/dryad.j5n06/4
title: uce_phyml

description: Results of species tree analyses (both bootstraps and summarized tree) using PhyML gene trees as input. Output is shown for three UCE datasets, including all 734 loci, only loci with 10 or more parsimony informative sites, and only loci with 20 or more parsimony informative sites.
DOI: 10.5061/dryad.k974s/1
title: Boucher&Démery_Online_Appendix
DOI: 10.5061/dryad.m2tj3/1
title: Full dataset

description: This file records all data analysed in the published study, describing species-level traits including brain size.
DOI: 10.5061/dryad.mp040/10
title: RK16sTS3_S3_L001_R2_001.fastq
DOI: 10.5061/dryad.mp040/11
title: Sequencing Metadata

description: File contains names of environmental samples, primer and index sequences, and library information corresponding to sequenced libraries.
DOI: 10.5061/dryad.mp040/9
title: RK16sTS3_S3_L001_R1_001.fastq
DOI: 10.5061/dryad.n9f8j/1
title: Align_NirK_267

description: NirK amino acid alignment used for tree building
DOI: 10.5061/dryad.p7p7p/1
title: Venom metalloproteinase activity and Squirrel Inhibition

description: This file includes 1440 rows of snake venom metalloproteinase activity data, where each row is defined by a unique combination of of rattlesnake (Crotalus oreganus) and a ground squirrel (Otospermophilus beecheyi). Columns include animal identification numbers, animal collection site, site elevation, geographic distance between snake and squirrel pairings, baseline metalloproteinase activity of each snake's venom, and the metalloproteinase activity achieved in the presence of ground squirrel blood serum, which contains venom inhibitors. This dataset was used to test for local adaptation in the interactions between rattlesnake predators and squirrel prey in the reference manuscript.
DOI: 10.5061/dryad.q447c/2
title: IPython Notebook for Sci-Hub raw data

description: IPython Notebook used to process the raw server log data (processing the GIS files into CSV, scraping DOI metadata, etc.).
DOI: 10.5061/dryad.q447c/3
title: Sci-Hub publisher DOI prefixes

description: Data scraped from the CrossRef website which can be used to replicate the analysis of downloads by publisher.
DOI: 10.5061/dryad.q8bf1/1
title: Supplementary Data 1

description: Supplementary Data 1. Raw fossil data. Repository and Specimen indicate the collection in which specimen is held and its specimen number. Family, Subfamily, Tribe, Genus, and Species indicate taxonomy of the specimen. Site and Site # indicate name and locality number of site at which specimen was found. Formation indicates geologic formation in which specimen was found. Region and Subregion indicate the biological region in which specimen was found (after Tedford et al. 2004). Age indicates NALMA subdivision to which specimen dates (after Tedford et al. 2004). Latitude indicates decimal latitude of site. Source indicates whether specimen was measured by authors or collected from published literature, in which case citation of paper containing measurement is included. Following columns indicate type of measurement made and dental measurements in millimeters: 2LPL = 2nd lower premolar length, 3LPL = 3rd lower premolar length, 4LPL = 4th lower premolar length, 1LML = 1st lower molar length, 2LML = 2nd lower molar length, 3LML = 3rd lower molar length, 2UML = 2nd upper molar length. Equid Mass indicates estimated mass of equids in kilograms (using equations of Janis 1990).
DOI: 10.5061/dryad.q8bf1/2
title: Supplementary Data 2

description: Supplementary Data 2. Raw recent data. Repository and Specimen indicate the collection in which specimen is held and its specimen number. Family, Genus, and Species indicate taxonomy of the specimen. Latitude indicates decimal latitude of site. Mass indicates reported mass of specimen in kilograms.
DOI: 10.5061/dryad.qs6d4/1
title: Verhofstadt et al_EmpathySupportObservational_Plos

description: Rdata file including data from 45 couples who participated in an observational lab study on empathy and social support
DOI: 10.5061/dryad.rj408/1
title: Raw dataset of six microsatellite loci for the 46 population samples genotyped
DOI: 10.5061/dryad.rj408/2
title: Dataset of body sizes of genetic parents and proportion of his and her own offspring
DOI: 10.5061/dryad.rj408/3
title: Dataset of body sizes (skull length) of descendant and nondescendant juveniles
DOI: 10.5061/dryad.s0pb0/2
title: Limited Data Set_011016
DOI: 10.5061/dryad.t60n5/1
title: 1_Data_integration

description: R Script to load input files and collate into a single matched data frame containing fitness, growth rate, and genetic and biolog distance data