cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25102445
title: Supplementary Material for: A Case of Osteopetrosis with Orbital Inflammation Secondary to Maxillary Osteomyelitis

description: <b><i>Introduction:</i></b> Osteopetrosis is a rare heritable disorder characterized by increased bone density resulting from osteoclast dysfunction. Major complications include bone fracture, osteomyelitis, anemia, and cranial nerve compression. Optic atrophy can occur due to compression of the optic nerve. Although osteomyelitis of the jaw is a common complication, it rarely occurs in the maxilla. Here, we report a case of a 74-year-old female with osteopetrosis who developed maxillary osteomyelitis, leading to orbital inflammation. <b><i>Case Presentation:</i></b> She was referred to our clinic for 2 months of ptosis and swelling of the left eyelid and temporal region. Previous imaging revealed a left intraorbital occupying lesion, but a biopsy of the temporal subcutaneous tissue did not provide a definitive diagnosis. After 7 months, she presented with severe temporal swelling and purulent discharge. Upon examination, maxillary osteomyelitis resulting from caries of the upper jaw was observed. Treatment with oral antibiotics, drainage of the temporal skin fistula, and regular cleaning of the maxillary drainage improved her symptoms. <b><i>Conclusion:</i></b> This is a rare case of maxillary osteomyelitis associated with osteopetrosis, causing orbital inflammation.
DOI: 10.6084/m9.figshare.25102973
title: Supplementary Material for: Late-Onset Capsular Block Syndrome with Pupillary Block Angle Closure after Cataract Surgery with Posterior Chamber Intraocular Lens Implantation: A Case Report

description: <b><i>Introduction:</i></b> Pseudophakic pupillary block angle-closure glaucoma is an uncommon complication following uneventful cataract surgery with posterior chamber intraocular lens (IOL) implantation. Interestingly, capsular block syndrome (CBS) has been reported as another plausible cause of pseudophakic pupillary block angle-closure glaucoma, especially in the early postoperative period. Unlike early postoperative CBS, late postoperative CBS is not associated with a shallow anterior chamber, myopic shift, or elevated intraocular pressure. We report a case of late postoperative CBS presenting with an acute-onset pupillary block angle-closure attack occurring 13 years after uneventful cataract surgery with posterior chamber IOL implantation, which has not been reported in the literature. <b><i>Case Presentation:</i></b> An 87-year-old male diagnosed with pseudoexfoliation syndrome developed pseudophakic pupillary block following uneventful cataract surgery with posterior chamber IOL implantation. Late-onset CBS has been identified as the underlying cause of the pupillary block. The combination of zonular laxity observed in pseudoexfoliation syndrome and the presence of a Soemmering ring are potential predisposing factors for this condition. After performing laser peripheral iridotomy (LPI) followed by Nd: YAG capsulotomy, the pupillary block was resolved and vision was improved. <b><i>Conclusion:</i></b> CBS should be considered as a potential cause of pseudophakic pupillary block, even in the late postoperative period. The management of late-onset CBS accompanied by pupillary block angle-closure glaucoma typically includes LPI to eliminate the pupillary block, followed by Nd: YAG capsulotomy.
DOI: 10.7289/v5jw8bsh
title: Global Significant Volcanic Eruptions Database
DOI: 10.17864/1947.117
title: EEG Data for Voluntary Finger Tapping Movement

description: This dataset consists of EEG data recorded during voluntary asynchronous index finger tapping from 14 healthy individuals for investigating the temporal dynamics of EEG associated with motor intention. EEG was recorded using TruScan Deymed amplifier with 19 channels according to 10-20 international system for three conditions - right finger tap, left finger tap and resting state with sampling frequency of 1024Hz. 120 trials were collected per participant with 40 trials for each of the three conditions. This dataset consists of 6s EEG trials that were segmented after pre-processing and artefacts removal using Independent Component Analysis. Two additional channels are included containing finger tapping movement recorded using a bespoke microcontroller tapping device to mark the exact location of finger tap. The 6s trials were segmented from -3s to +3s with respect to the onset of the finger tap are included in this dataset.
DOI: 10.21227/afgq-ht69
title: Pathology Imaging and Region of Interest Mask Definition

description: 70 images with a total of more than 2 GB of data have been employed for the experimental evaluation. All images are acquired at 24 bpp with 8 bits per pixel per component (bpppc). They depict various tissues of different sizes and stained with Hematoxylin and Eosin (H\&E) stain. The tissues employed in the experiments are skin fibroblast (SKNF), endometrial (END), lung (LNGF), embryonic stem cells (ES), kidney clear cell carcinoma (KIRC), pancreas (PANC), brain glioblastoma multiforme (GBM), colon adenocarcinoma (COAD), and lymphatic (LYMP).
DOI: 10.5281/zenodo.1067229
title: Data Set For The Paper: Intercomparison Of Ocean Colour Algorithms For Picophytoplankton Carbon In The Ocean

description: This dataset contains the phytoplankton carbon,Cphy, obtained from in situ counts of phytoplankton cells using ow cytometry presented in the paper [13]. The location and time of the samples have been matched with the satelllite data in the Ocean  Colour Climate Change Initiative (OCCCI) dataset. This dataset is the match between the in situ Cphy and the products from using the OCCCI inputs (i.e. chlorophyll concentration, backscattering coecient, phytoplankton absorption) with 6 different algorithms. This document describes the dataset details: data sources, computation of Cphy, selected data.
description: Funded under ESA SEOM project: Pools of Carbon in the Ocean
DOI: 10.6084/m9.figshare.25101827
title: Supplementary Material for: Association of Neonatal Antibiotic Exposure with Long-Term Growth Trajectory Faltering in Preterm-Birth Children

description: <b><i>Introduction:</i></b> Preterm neonates often receive a variety of duration of antibiotic exposure during admission. The aim of the study was to evaluate whether neonatal antibiotic exposure is relevant with longitudinal growth problems in preterm-birth children. <b><i>Methods:</i></b> This prospective study enrolled 481 infants who were born &lt;32 weeks of gestation, discharged, and longitudinally followed from corrected age (CA) 6–60 months. After excluding 153 infants with blood culture-confirmed bacteremia, necrotizing enterocolitis, severe cerebral palsy, intestinal ostomy, and congenital anomaly, 328 infants were included for analysis. Covariates included perinatal demographics, neonatal morbidities, extrauterine growth restriction, and antibiotic exposure accumulated by term equivalent age. The primary outcome was the anthropometric trajectories in z-score of bodyweight (zBW), body height (zBH), and body mass index (zBMI) from CA 6–60 months. <b><i>Results:</i></b> Antibiotic exposure duration was significantly negatively associated with zBW and zBH at CA 6, 12, and 60 months, and zBMI at CA 60 months. Multivariate generalized estimating equation analyses showed antibiotic exposure duration had significantly faltering z-score increment from CA 6 to 60 months in zBW and zBH (adjusted mean [95% CI]; ΔzBW: −0.021 [−0.041 to −0.001], <i>p</i> = 0.042; ΔzBH: −0.019 [−0.035 to −0.002], <i>p</i> = 0.027) after adjustment. Children with neonatal antibiotic exposure duration &gt;15 days were significantly lower in the mean anthropometric zBW, zBH, and zBMI at CA 6, 12, 24, and 60 months compared with children with neonatal antibiotic exposure ≤15 days (all <i>p</i> &lt; 0.01). <b><i>Conclusions:</i></b> Growth increments were negatively associated with antibiotic exposure duration in preterm neonates implicating that antibiotic stewardship and growth follow-up for preterm neonates are thus warranted.
DOI: 10.6084/m9.figshare.25101902
title: Supplementary Material for: Pulmonary Adenoid Cystic Carcinoma Mimicking Asthma-Like Symptoms: A Case Report and Literature Review

description: <b><i>Introduction:</i></b> Pulmonary adenoid cystic carcinoma (PACC) is a rare, low-grade malignant salivary gland-type tumor characterized by a dormant onset and slow progression, often leading to misdiagnosis. Due to its rarity, limited cases have been reported in the literature. This report aimed to enhance clinicians’ understanding of this infrequent disease. <b><i>Case Presentation:</i></b> We present the case of a 41-year-old female patient diagnosed with PACC. Our report provides a comprehensive analysis of the patient’s imaging, pathology, and treatment, with a particular focus on immunohistochemical results. Importantly, we emphasize the significance of considering foreign bodies and tumors in the bronchus when encountering asthma-like symptoms unresponsive to conventional treatments. Due to the uncertain etiology and pathophysiology of PACC, there are currently no established guidelines for chemotherapy and radiotherapy. <b><i>Conclusion:</i></b> PACC predominantly manifests as bronchial lesions without significant clinical heterogeneity. Therefore, it is crucial to consider foreign bodies and tumors in the bronchus when dealing with asthma-like symptoms, especially in patients without chronic lung disease who do not respond to anti-infective, antispasmodic, and antiasthmatic treatments. Additionally, meticulous examination of lesions is essential for timely diagnosis and intervention, ultimately improving patient survival rates.
DOI: 10.6084/m9.figshare.25102481
title: Supplementary Material for: 5-Aminosalicylic Acid-Induced Liver Injury in a Patient with Ulcerative Colitis: A Case Report

description: <b><i>Introduction:</i></b> Drug-induced liver injury (DILI) associated with 5-aminosalicylic acid (5-ASA) is a rare but potentially life-threatening adverse event. <b><i>Case Presentation:</i></b> We report the case of a 58-year-old woman with ulcerative colitis who developed DILI after initiating maintenance therapy with the multimatrix system 5-ASA. The patient presented with grade 4 liver enzyme elevation on day 98 after initiating 5-ASA and was admitted to the hospital. Blood tests revealed the mixed liver injury, and imaging studies showed no abnormalities except for mild lymph node enlargement. Liver biopsy revealed acute lobular hepatitis with interfacial activity. The patient’s score on the International Autoimmune Hepatitis Group 1999 revised scoring system was a total score of 10, causing a suspicion for the diagnosis of autoimmune hepatitis. The DDW-J 2004 scale calculated a total score of six, indicating a high probability of DILI. We suspected DILI due to 5-ASA, and the 5-ASA formulations were discontinued. The patient was treated with ursodeoxycholic acid and neominophagen C, and her liver function gradually improved without steroid treatment. Finally, we definitively diagnosed DILI based on the pathological findings and clinical course after discontinuation of 5-ASA. <b><i>Conclusion:</i></b> This case highlights the importance of monitoring liver function in patients receiving 5-ASA therapy.
DOI: 10.6084/m9.figshare.25102940
title: Supplementary Material for: Psychological Treatment of Comorbid Insomnia and Depression: A Double-Blind Randomized Placebo-Controlled Trial

description: <b><i>Introduction:</i></b> Insomnia and depression are highly prevalent disorders and commonly occur together. Cognitive behavioral therapy for insomnia, CBT-I, has been shown to be effective in treating insomnia and also comorbid depression. However, it is unclear whether effects of CBT-I on depression are specific or nonspecific. Also, depressive symptoms often remain too high after CBT-I, indicating a need for improved treatments. The objective was to determine whether combining CBT-I with CBT for depression, without increasing treatment length, reduces both insomnia and depression more than CBT for depression with a placebo insomnia intervention. <b><i>Methods:</i></b> A 12-week double-blind randomized controlled trial with a 6-month follow-up in a psychiatric setting using therapist-guided internet-delivered treatments was conducted. Patients (<i>N</i> = 126) were diagnosed with insomnia disorder and major depression by physicians. Primary outcome measures were as follows: self-rating scales Insomnia Severity Index (ISI) and Montgomery-Åsberg Depression Rating Scale (MADRS-S). <b><i>Results:</i></b> The combined treatment showed specific effects on insomnia severity over the control treatment (<i>p</i> = 0.007) but was not more effective in reducing depression severity. Within-group effects (Cohen’s <i>d</i>) at post and at 6 months were as follows: ISI 1.40 and 1.42 (combined treatment), 0.95 and 1.00 (control); MADRS-S 0.97 and 1.12 (combined), 0.88 and 0.89 (control). <b><i>Conclusions:</i></b> CBT-I shows large specific effects on insomnia severity and is superior to control in this regard. Both treatments had similar effects on depression severity, i.e., combining CBT-I with CBT for depression did not enhance outcomes on depression compared to control. We suggest CBT-I should always be offered to patients with insomnia and depression comorbidity, possibly as the first-hand choice. Combining it with a psychological treatment for depression could be too burdening and may not be beneficial.
DOI: 10.5067/temsc-3jc63
title: JPL GRACE and GRACE-FO Mascon Ocean, Ice, and Hydrology Equivalent Water Height Coastal Resolution Improvement (CRI) Filtered Release 06.1 Version 03
DOI: 10.5281/zenodo.10069196
title: Soil respiration data measured with LI-7810 CH4/CO2/H2O Trace Gas Analyzer in Tangermuende/Germany in August 2022

description: The dataset is associated with the publication Koschorreck, M., Kamjunke, N., Koedel, U., Rode, M., Schuetze, C., and Bussmann, I.: Diurnal versus spatial variability of greenhouse gas emissions from an anthropogenic modified German lowland river, Biogeosciences Discuss. [preprint], https://doi.org/10.5194/bg-2023-176, in review, 2023. 

It shows CO2 and CH4 initial concentrations and flux data measured with the LICOR 7810 instrument and calculated with the SoilFluxPro software V5.3.
DOI: 10.4121/da3376f2-ea1d-453a-89e7-d607f93a7e8b.v2
title: The geochemical and zircon U-Pb dating data of the Milai section in the Gonjo Basin, Southeast Tibet

description: The geochemical data (in our case Rb/Sr and Ti/Ca data) were measured using an Innov-X Systems X-ray fluorescence (XRF) spectrometer, and used to carried out cyclostratigraphic analysis (and establish a floating astronomical timescale) and trace orbital-scale climate changes in the Gonjo Basin. The zircon U-Pb dating were performed using an Agilent 7900 ICP-MS equipped with a coherent 193 nm excimer laser ablation system (GeoLas HD) and identified the age of the volcanic layer at 866 m in the Gonjo Basin, and anchored in numerical time in order to obtain an absolute astronomical timescale.
DOI: 10.48577/jpl.kxy5bw
title: Total Electron Content Intensification Dataset for Years 2003 to 2022

description: The dataset contains the number and characteristics of large-scale total electron content (TEC) intensifications identified from global ionospheric TEC maps (available at https://sideshow.jpl.nasa.gov/pub/iono_daily/gim_for_research/jpld/) using feature extraction software. The dataset spans from years 2003 to 2022.
DOI: 10.5067/measures/so2/data203
title: OMPS/NPP PCA SO2 Total Column 1-Orbit L2 Swath 50x50km
DOI: 10.5281/zenodo.10035726
title: philip928lin/Flood-Risks-of-Cyber-physical-Attacks-in-a-Smart-Storm-Water-System: Flood Risks of Cyber-physical Attacks in a Smart Storm Water System

description: This is the code archive for the publication "Flood Risks of Cyber-physical Attacks in a Smart Storm Water System" in Water Resources Research.
DOI: 10.5281/zenodo.1007941
title: N2 Schafer Lab N2 (Bristol, Uk) | 2010-03-11T10:04:01+00:00

description: This experiment is part of the <em>C.elegans behavioural database</em>. For more information and the complete collection of experiments visit http://movement.openworm.org



<b>preview link</b> : https://www.youtube.com/watch?v=Qnee_-a0KfM
<b>strain</b> : N2
<b>timestamp</b> : 2010-03-11T10:04:01+00:00
<b>gene</b> : -N/A-
<b>chromosome</b> : -N/A-
<b>allele</b> : -N/A-
<b>strain_description</b> : Schafer Lab N2 (Bristol, UK)
<b>sex</b> : hermaphrodite
<b>stage</b> : adult
<b>ventral_side</b> : anticlockwise
<b>media</b> : NGM agar low peptone
<b>arena</b> :   
  <b>style</b> : petri
  <b>size</b> : 35
  <b>orientation</b> : away
  

<b>food</b> : OP50
<b>habituation</b> : 30m wait
<b>who</b> : Laura Grundy
<b>protocol</b> : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.
<b>lab</b> :   
  <b>name</b> : William R Schafer
  <b>location</b> : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK
  

<b>software</b> :   
  <b>name</b> : tierpsy (https://github.com/ver228/tierpsy-tracker)
  <b>version</b> : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219
  <b>featureID</b> : @OMG
  

<b>base_name</b> : N2 on food R_2010_03_11__10_04_01___4___1
<b>total time (s)</b> : 899.73
<b>frames per second</b> : 25.5754
<b>video micrometers per pixel</b> : 4.7068
<b>number of segmented skeletons</b> : 19362
DOI: 10.5281/zenodo.10524900
title: Supplementary Data: Diversity of bacterial symbionts associated with the tropical plant bug Monalonion velezangeli (Hemiptera: Miridae) revealed by high-throughput 16S-rRNA sequencing

description: Supplementary data: Tables and Figures
DOI: 10.5281/zenodo.8221440
title: Afterslip distribution related to the Van Earthquake (Turkey) of 23 Oct. 2011

description: Two distributions of slip (afterslip) related to the Van earthquake - after 4 days - after 17 days as reported in Figure 9 and 10 of the paper Deformation and Related Slip Due to the 2011 Van Earthquake (Turkey) Sequence Imaged by SAR Data and Numerical Modeling <em>Elisa Trasatti, Cristiano Tolomei, Giuseppe Pezzo, Simone Atzori and Stefano Salvi</em> Rem. Sens. 2016, 8, 532; doi:10.3390/rs8060532 Coordinates, depth and slip in meters. The geographical coordinates are projected with UTM zone 38. The depth of the first row of patches is positive due to the elevation of the area.
description: {"references": ["Trasatti et al., (2016), \"Deformation and Related Slip Due to the 2011 Van Earthquake (Turkey) Sequence Imaged by SAR Data and Numerical Modeling\", Rem. Sens., doi:10.3390/rs8060532"]}
DOI: 10.60520/ieda/113071
title: Dataset for Discovery of a dust sorting process on boulders near the Reiner Gamma swirl on the Moon

description: The derived data consists of Markov chain values for bright regolith, dark regolith, normal boulders and the photometrically anomalous dusty boulders. Additionally, the image IDs, phase angle and average reflectance values for each of the 24 locations are also included.
description: Rüsch, O., Hess, M., Wöhler, C., Bickel, V. T., Marshal, M.R., Patzek, M., and Huybrighs, H. L. F. (2023), "Discovery of a dust sorting process on boulders near the Reiner Gamma swirl on the Moon." JGR Planets, under revision
DOI: 10.6084/m9.figshare.24783060
title: The data utilized in the paper by Qiquan Yang: Satellite clear-sky observations overestimate surface urban heat islands in humid cities.

description: This file contains the data utilized in the paper by Qiquan Yang: Satellite clear-sky observations overestimate surface urban heat islands in humid cities.Citation: Yang, Q. (2023). Data utilized in the paper by Qiquan Yang: Satellite clear-sky observations overestimate surface urban heat islands in humid cities [Dataset]. Figshare. https://doi.org/10.6084/m9.figshare.24783060
DOI: 10.6084/m9.figshare.25092602
title: Supplementary Material for: CCL7 chemokine is a marker but not a therapeutic target of acute kidney injury

description: Background: Chemokines orchestrate immune cells activation and infiltration during acute kidney injury (AKI). 
Objectives: We aim to test whether deletion of C-C Chemokine Ligand 7 (CCL7), a small chemokine related to CCL2 (MCP-1), may modulate AKI development and progression toward kidney fibrosis. 
Method: Expression of CCL7 was quantified in murine cortical tubular (MCT) cells exposed to myoglobin or lipopolysaccharide or submitted to metabolic reprogramming. Kidney function (BUN, glomerular filtration rate), expression of CCL7 receptors, and kidney infiltration by inflammatory cells (F4/80+ macrophages, MPO+ neutrophils, and B220+ B-cells) were assessed in wt and Ccl7-/- mice submitted to 3 different models of AKI or kidney fibrosis (uni/bilateral ischemia/reperfusion injury (u/bIRI) and rhabdomyolysis).
Results: Toxin exposure of MCT cells, as well as metabolic reprogramming recapitulating AKI changes, led to a dramatic up-regulation of CCL7. In vivo, kidney expression of Ccl7 and Ccl2 significantly increased after AKI and remained increased beyond the acute phase (30 days after uIRI). The expression of the CCL7 receptors was heterogeneous and varied with time. Kidney function, expression of CCL7 receptors and Ccl2, and the number of inflammatory cells within kidneys were similar in wt and Ccl7-/- mice at baseline and at day 2 after AKI. 30 days after uIRI, kidney fibrosis was similar in both mouse strains.
Conclusions: Despite strong induction of CCL7 after AKI, CCL7 deficiency does not prevent AKI and the transition toward kidney fibrosis and should probably not be further explored as a potential target to prevent or treat AKI.
DOI: 10.6084/m9.figshare.25092794
title: Supplementary Material for: Cytopathology of chondromyxoid fibroma: Report of two cases with immunocytochemical expression of GRM1

description: Introduction: Chondromyxoid fibroma (CMF) is a rare, benign bone tumor that occurs predominantly in the second and third decades of life, more frequently in males. Overexpression of GRM1 as a consequence of tumor specific gene rearrangement of GRM1 has recently been reported as a useful immunohistochemical marker for histopathological diagnosis of CMF. However, the usefulness of GRM1 staining of cytology specimens has not yet been evaluated. In this report, the cytological findings and GRM1 immunocytochemistry of two cases of CMF are described.
Case Presentations: Case 1 was a 15-year-old girl with a rib tumor. Imaging findings suggested a benign neurogenic tumor such as schwannoma. The tumor had increased in size over a two-year period and was resected. Case 2 was a 14-year-old boy with a metatarsal tumor involving his left first toe. Imaging findings were suspicious of a benign neoplastic lesion. Biopsy findings suggested a benign tumor, and the patient underwent tumor resection. Cytologically, in both cases the tumor cells were predominantly spindle-shaped or stellate, with a myxoid to chondromyxoid background matrix and multinucleated giant cells, and these matrices were metachromatic with Giemsa staining. Cellular atypia was more accentuated in case 2 than in case 1. Immunocytochemical staining for GRM1 was positive in both cases.
Conclusion: Due to the overlap in cytological findings, it is often difficult to differentiate CMF from chondroblastoma and chondrosarcoma grade 2. Immunocytochemical staining for GRM1 may support the diagnosis of CMF, and the re-use of Papanicolaou-stained specimens is applicable. The present cases further demonstrated the difficulty of differentiating CMF from other mimicking tumors such as chondroblastoma and chondrosarcoma grade 2. In such instances, immunocytochemistry for GRM1 is applicable to the diagnostic process, the value of which is strengthened by reusing Papanicolaou-stained specimens.