cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5524/101982
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0919

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001776. Preliminary identification is that it is of the family Moraceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 315893000bp. We have generated 71880000000bp of data, which gives a theoretical coverage of 227.5x.
DOI: 10.5524/102194
title: Supporting data for "Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle <i>Pollicipes pollicipes</i>"

description: The barnacles are a group of more than 2,000 species that have fascinated biologists, including Darwin, for centuries. Their lifestyles are extremely diverse from free-swimming larvae to sessile adults, and even root-like endoparasites. Barnacles also have a major economic impact with hundreds of millions of dollars of losses annually due to biofouling. Genomic resources for crustaceans, and barnacles in particular, are lacking. Using 62x PacBio coverage, 189x Illumina WGS coverage, 203x HiC coverage, and 69x CHi-C coverage, we produced a chromosome-level genome assembly of the gooseneck barnacle <i>Pollicipes pollicipes</i>. The <i>P. pollicipes</i> genome is 770 Mbp long and its assembly is one of the most contiguous and complete crustacean genomes available, with a scaffold N50 of 47 Mbp and 90.5% of the BUSCO Arthropoda gene set. Using the genome annotation produced here along with transcriptomes of 13 other barnacle species, we completed phylogenetic analyses on a nearly 2 million amino acid alignment.<br>Contrary to previous studies, our phylogenies suggest the Pollicipedomorpha is sister to the Balanomorpha, which alters our understanding of barnacle larval evolution. We also compared transcriptomes of <i>P. pollicipes</i> nauplius larvae and adults and found that nearly one half of the genes in the genome are differentially expressed. Annotation of the genes with KEGG and GO terms reveals these stages exhibit many differences including cuticle binding, chitin binding, microtubule motor activity, and membrane adhesion.<br>This study provides high quality genomic resources for a key group of crustaceans. This is especially valuable given the roles <i>P. pollicipes</i>plays in European fisheries, as a sentinel species for coastal ecosystems, and as a model for studying barnacle adhesion as well as its key position in the barnacle tree of life. A combination of genomic, phylogenetic, and transcriptomic analyses here provides valuable insights into the evolution and development of barnacles.
DOI: 10.5524/101937
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0874

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002335. Preliminary identification is that it is of the family Euphorbiaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 524631000bp. We have generated 67240000000bp of data, which gives a theoretical coverage of 128.2x.
DOI: 10.5524/101939
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0876

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002275. Preliminary identification is that it is of the family Vernicia montana. <br>The K-mer distribution of the sequencing predicted the genome size to be 1301990000bp. We have generated 63600000000bp of data, which gives a theoretical coverage of 48.8x.
DOI: 10.5524/101940
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0877

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002276. Preliminary identification is that it is of the family Maclura tricuspidata. <br>The K-mer distribution of the sequencing predicted the genome size to be 2447600000bp. We have generated 79160000000bp of data, which gives a theoretical coverage of 32.3x.
DOI: 10.5524/101941
title: Image data of Nanmaohu Park vascular plant specimen, RL0878

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains images from the plant vouchered as not provided. Preliminary identification is that it is of the family uncharacterized vascular plant. <br>Unforuntaly insufficient DNA was extracted from the sample to make suquencing possible at this time.
DOI: 10.5524/101942
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0879

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001596. Preliminary identification is that it is of the family Bignoniaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 396924000bp. We have generated 58940000000bp of data, which gives a theoretical coverage of 148.5x.
DOI: 10.5524/101943
title: Image data of Nanmaohu Park vascular plant specimen, RL0880

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains images from the plant vouchered as not provided. Preliminary identification is that it is of the family uncharacterized vascular plant. <br>Unforuntaly insufficient DNA was extracted from the sample to make suquencing possible at this time.
DOI: 10.5524/101952
title: Image data of Nanmaohu Park Mayodendron igneum plant specimen, RL0889

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains images from the plant vouchered as HCNGB:RUILI:HCNGB_00002278. Preliminary identification is that of a Mayodendron igneum plant. <br>Unforuntaly insufficient DNA was extracted from the sample to make suquencing possible at this time.
DOI: 10.5524/101954
title: Genomic data of Nanmaohu Park Oleaceae plant specimen, RL0891

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001793. Preliminary identification is that it is of the family Oleaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 625902000bp. We have generated 75620000000bp of data, which gives a theoretical coverage of 120.8x.
DOI: 10.5524/101959
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0896

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002280. Preliminary identification is that it is of the family Capparis urophylla. <br>The K-mer distribution of the sequencing predicted the genome size to be 1184570000bp. We have generated 72680000000bp of data, which gives a theoretical coverage of 61.4x.
DOI: 10.5524/101968
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0905

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001774. Preliminary identification is that it is of the family Moraceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 423035000bp. We have generated 70860000000bp of data, which gives a theoretical coverage of 167.5x.
DOI: 10.5524/101969
title: Image data of Nanmaohu Park vascular plant specimen, RL0906

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains images from the plant vouchered as not provided. Preliminary identification is that it is of the family uncharacterized vascular plant. <br>Unforuntaly insufficient DNA was extracted from the sample to make suquencing possible at this time.
DOI: 10.5524/101970
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0907

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001507. Preliminary identification is that it is of the family Acanthaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 789891000bp. We have generated 70840000000bp of data, which gives a theoretical coverage of 89.7x.
DOI: 10.5524/101972
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0909

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001823. Preliminary identification is that it is of the family Phyllanthaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 600709000bp. We have generated 57840000000bp of data, which gives a theoretical coverage of 96.3x.
DOI: 10.5524/101979
title: Image data of Nanmaohu Park Parabaena sagittata plant specimen, RL0916

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains images from the plant vouchered as HCNGB:RUILI:HCNGB_00002284. Preliminary identification is that of a Parabaena sagittata plant. <br>Unforuntaly insufficient DNA was extracted from the sample to make suquencing possible at this time.
DOI: 10.5524/101980
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0917

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002339. Preliminary identification is that it is of the family Lauraceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 1501280000bp. We have generated 70020000000bp of data, which gives a theoretical coverage of 46.6x.