cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34934/dvn/khqe0p
title: Transcription of 20 sight translations (EN&gt;FR) by translation students coded with voiced pauses and silent pauses

description: This corpus is made of the transcription of 20 sight translations made from English to French by translation students after a 10-minute preparation on the basis of the source text entitled "Looking into the voids could help explain dark energy" (full reference: Ananthaswamy, A. (2015). Looking into the voids could help explain dark energy. New Scientist. https://www.newscientist.com/article/mg22630164-600-looking-into-the-voids-could-help-explain-dark-energy/). The students' oral productions were faithfully transcribed and therefore contain hesitations and repetitions. Silent pauses ("ps" in the corpus) and voiced pauses ("pv" in the corpus) of minimum 2 seconds were coded in the transcriptions. The corpus is available in UTF-8 to ensure easy upload in concordancing programs and can be used by any researcher in translation studies who wishes to analyze any aspect of (sight) translation, possibly in regard with pauses.
DOI: 10.5281/zenodo.5912821
title: Choline acetyltransferase (ChAT) - Amyloid beta peptides complex Molecular dynamics Trajectories

description: In silico molecular dynamics study was performed for the choline acetyltransferase (ChAT) - Abeta peptides complex. The molecular docking of Aβ<sub>40 </sub>and Aβ<sub>42</sub> on ChAT suggested three most probable binding clusters for both the Aβ peptides. Thus generating ChAT-Aβ<sub>40</sub> Cluster-0, ChAT-Aβ<sub>40</sub> Cluster-1, ChAT-Aβ<sub>40</sub> Cluster-2 for Aβ<sub>40</sub> peptide on ChAT, likewise ChAT-Aβ<sub>42</sub> Cluster-0, ChAT-Aβ<sub>42</sub> Cluster-1, ChAT-Aβ<sub>42</sub> Cluster-2 were generated for Aβ<sub>42</sub> peptide on ChAT. Each of the folders contains the topology file with a ‘.gro’ extension and a trajectory file with ‘.xtc’ extension generated from the 100 ns molecular dynamics performed for each of the clusters mentioned above that were generated from the molecular docking. The folders are named as follows: ChAT_AB40_Cluster_0: Containing the topology file (ab40_0.gro) and the trajectory file (ab40_0.xtc) ChAT_AB40_Cluster_1: Containing the topology file (ab40_1.gro) and the trajectory file (ab40_1.xtc) ChAT_AB40_Cluster_2: Containing the topology file (ab40_2.gro) and the trajectory file (ab40_2.xtc) ChAT_AB42_Cluster_0: Containing the topology file (ab42_0.gro) and the trajectory file (ab42_0.xtc) ChAT_AB42_Cluster_1: Containing the topology file (ab42_1.gro) and the trajectory file (ab42_1.xtc) ChAT_AB42_Cluster_2: Containing the topology file (ab42_2.gro) and the trajectory file (ab42_2.xtc
DOI: 10.5281/zenodo.5912820
title: Choline acetyltransferase (ChAT) - Amyloid beta peptides complex Molecular dynamics Trajectories

description: In silico molecular dynamics study was performed for the choline acetyltransferase (ChAT) - Abeta peptides complex. The molecular docking of Aβ<sub>40 </sub>and Aβ<sub>42</sub> on ChAT suggested three most probable binding clusters for both the Aβ peptides. Thus generating ChAT-Aβ<sub>40</sub> Cluster-0, ChAT-Aβ<sub>40</sub> Cluster-1, ChAT-Aβ<sub>40</sub> Cluster-2 for Aβ<sub>40</sub> peptide on ChAT, likewise ChAT-Aβ<sub>42</sub> Cluster-0, ChAT-Aβ<sub>42</sub> Cluster-1, ChAT-Aβ<sub>42</sub> Cluster-2 were generated for Aβ<sub>42</sub> peptide on ChAT. Each of the folders contains the topology file with a ‘.gro’ extension and a trajectory file with ‘.xtc’ extension generated from the 100 ns molecular dynamics performed for each of the clusters mentioned above that were generated from the molecular docking. The folders are named as follows: ChAT_AB40_Cluster_0: Containing the topology file (ab40_0.gro) and the trajectory file (ab40_0.xtc) ChAT_AB40_Cluster_1: Containing the topology file (ab40_1.gro) and the trajectory file (ab40_1.xtc) ChAT_AB40_Cluster_2: Containing the topology file (ab40_2.gro) and the trajectory file (ab40_2.xtc) ChAT_AB42_Cluster_0: Containing the topology file (ab42_0.gro) and the trajectory file (ab42_0.xtc) ChAT_AB42_Cluster_1: Containing the topology file (ab42_1.gro) and the trajectory file (ab42_1.xtc) ChAT_AB42_Cluster_2: Containing the topology file (ab42_2.gro) and the trajectory file (ab42_2.xtc
DOI: 10.6084/m9.figshare.7962986
title: Shararati Prabhutv Aur NetratvDr. NEETU SINGH TOMAR, Post Doctoral Fellow, University Grant Commission New Delhi

description: International Journal of Management Sociology & Humanities, April 2019, Volume 10 (4), Pages 21-30
DOI: 10.6084/m9.figshare.7962986.v5
title: Shararati Prabhutv Aur NetratvDr. NEETU SINGH TOMAR, Post Doctoral Fellow, University Grant Commission New Delhi

description: International Journal of Management Sociology & Humanities, April 2019, Volume 10 (4), Pages 21-30
DOI: 10.6084/m9.figshare.7962986.v4
title: Shararati Prabhutv Aur Netratv

description: International Journal of Management Sociology & Humanities, April 2019, Volume 10 (4), Pages 21-30
DOI: 10.6084/m9.figshare.7582199
title: Dr. Neetu Singh Tomar Ka FARRUKHABAD Jile Men Braman Evam Jansampark Vivaran.Dr. NEETU SINGH TOMAR, Post Doctoral Fellow, University Grant Commission New Delhi

description: Dr. Neetu Singh Tomar Ka FARRUKHABAD Jile Men Braman Evam Jansampark Vivaran (Dated 07-02-2015 to Dated 05-02-2018)
DOI: 10.6084/m9.figshare.7582178
title: Dr. Neetu Singh Tomar Ka Farrukhabad Janpad Men Jansampark Aur Vyaktion Ka VivranDr. NEETU SINGH TOMAR, Post Doctoral Fellow, University Grant Commission New Delhi

description: Dr. Neetu Singh Tomar Ka Farrukhabad Men Jansampark-Vyakti Vivran (Dated 07-02-2015 to Dated 05-02-2018)
DOI: 10.6084/m9.figshare.7582199.v2
title: Dr. Neetu Singh Tomar Ka FARRUKHABAD Jile Men Braman Evam Jansampark Vivaran.Dr. NEETU SINGH TOMAR, Post Doctoral Fellow, University Grant Commission New Delhi

description: Dr. Neetu Singh Tomar Ka FARRUKHABAD Jile Men Braman Evam Jansampark Vivaran (Dated 07-02-2015 to Dated 05-02-2018)
DOI: 10.6084/m9.figshare.7582199.v1
title: Dr. Neetu Singh Tomar Ka FARRUKHABAD Jile Men Braman Evam Jansampark Vivaran.

description: Dr. Neetu Singh Tomar Ka FARRUKHABAD Jile Men Braman Evam Jansampark Vivaran (Dated 07-02-2015 to Dated 05-02-2018)
DOI: 10.34740/kaggle/dsv/3104973
title: AutoXGB
DOI: 10.5281/zenodo.5832990
title: Femtosecond electron diffraction data of iron and cobalt

description: Femtosecond electron diffraction data of iron and cobalt measured at the Fritz Haber Institute in Berlin. The excitation wavelength was 2300 nm in all measurements. For iron, data were recorded with four different pump fluences. For cobalt, data were recorded with six different pump fluences. The samples were polycrystalline films with a thickness of 20 nm, sandwiched between two layers of silicon nitride with a thickness of 5 nm each. More information is available here: https://arxiv.org/abs/2110.00525
DOI: 10.5281/zenodo.5832989
title: Femtosecond electron diffraction data of iron and cobalt

description: Femtosecond electron diffraction data of iron and cobalt measured at the Fritz Haber Institute in Berlin. The excitation wavelength was 2300 nm in all measurements. For iron, data were recorded with four different pump fluences. For cobalt, data were recorded with six different pump fluences. The samples were polycrystalline films with a thickness of 20 nm, sandwiched between two layers of silicon nitride with a thickness of 5 nm each. More information is available here: https://arxiv.org/abs/2110.00525
DOI: 10.6084/m9.figshare.19085462.v1
title: Dataset for Mathematical Model of in vitro Hepatocellular Cholesterol and Lipoprotein Metabolism, fig. 2

description: Comparison of numerical simulations conducted with the original model from [18] and with the newly developed model including PCSK9. In the latter, the concentration of PCSK9 in the extracellular space was 10<sup>12</sup> molec./mL. The initial oscillations in mRNA and molecular levels, as well as the steady-state levels are reproduced well. The slow kinetics of VLDL and LDL extraction from the extracellular environment are also captured.<br>
DOI: 10.6084/m9.figshare.19085462
title: Dataset for Mathematical Model of in vitro Hepatocellular Cholesterol and Lipoprotein Metabolism, fig. 2

description: Comparison of numerical simulations conducted with the original model from [18] and with the newly developed model including PCSK9. In the latter, the concentration of PCSK9 in the extracellular space was 10<sup>12</sup> molec./mL. The initial oscillations in mRNA and molecular levels, as well as the steady-state levels are reproduced well. The slow kinetics of VLDL and LDL extraction from the extracellular environment are also captured.<br>
DOI: 10.6084/m9.figshare.19085579.v1
title: Dataset for Mathematical Model of in vitro Hepatocellular Cholesterol and Lipoprotein Metabolism, fig. 3

description: An increase in the level of PCSK9 in the extracellular space (parameter $\bar{p}_{E0}$) leads to an increase in the levels of LDL and VLDL, as expected in hypercholesterolemia. The effect begins at PCSK9 concentrations above $10^{13}$ molec./ml (hundreds of nM), that is above normal physiological concentrations.
DOI: 10.6084/m9.figshare.19085579
title: Dataset for Mathematical Model of in vitro Hepatocellular Cholesterol and Lipoprotein Metabolism, fig. 3

description: An increase in the level of PCSK9 in the extracellular space (parameter $\bar{p}_{E0}$) leads to an increase in the levels of LDL and VLDL, as expected in hypercholesterolemia. The effect begins at PCSK9 concentrations above $10^{13}$ molec./ml (hundreds of nM), that is above normal physiological concentrations.
DOI: 10.6084/m9.figshare.19085585
title: Dataset for Mathematical Model of in vitro Hepatocellular Cholesterol and Lipoprotein Metabolism, fig. 4

description: A simulation showing the effect of the addition of external PCSK9 at a predefined time point (100h). While the cells did not produce enough PCSK9 for the pronounced effects, the addition of external PCSK9 causes changes in LDL and VLDL levels.
DOI: 10.6084/m9.figshare.19085585.v1
title: Dataset for Mathematical Model of in vitro Hepatocellular Cholesterol and Lipoprotein Metabolism, fig. 4

description: A simulation showing the effect of the addition of external PCSK9 at a predefined time point (100h). While the cells did not produce enough PCSK9 for the pronounced effects, the addition of external PCSK9 causes changes in LDL and VLDL levels.
DOI: 10.6084/m9.figshare.19085594.v1
title: Dataset for Mathematical Model of in vitro Hepatocellular Cholesterol and Lipoprotein Metabolism, fig. 5

description: A simulation showing the effect of statin therapy in the \textit{in vitro} experiment. Here a single dose of statin was applied at approximately $t =10$ h. The uptake of statin by the cells is followed by inhibition of cholesterol biosynthesis by HMGCR. This also leads to up-regulation of LDLR and PCSK9 mRNA transcription, which have a competing effect on LDL and VLDL levels. Yet, a reduction caused by the LDLR is more pronounced. The numerical results for an idealized statin that instantaneously halts transcription of HMGCR mRNA (11 doses) from are also presented [18].
DOI: 10.6084/m9.figshare.19085594
title: Dataset for Mathematical Model of in vitro Hepatocellular Cholesterol and Lipoprotein Metabolism, fig. 5

description: A simulation showing the effect of statin therapy in the \textit{in vitro} experiment. Here a single dose of statin was applied at approximately $t =10$ h. The uptake of statin by the cells is followed by inhibition of cholesterol biosynthesis by HMGCR. This also leads to up-regulation of LDLR and PCSK9 mRNA transcription, which have a competing effect on LDL and VLDL levels. Yet, a reduction caused by the LDLR is more pronounced. The numerical results for an idealized statin that instantaneously halts transcription of HMGCR mRNA (11 doses) from are also presented [18].
DOI: 10.6084/m9.figshare.19085636
title: Dataset for Mathematical Model of in vitro Hepatocellular Cholesterol and Lipoprotein Metabolism, fig. 6

description: A simulation showing the effect of anti-PCSK9 antibodies therapy. Here antibodies were applied at the zero time point at different concentrations. Initial concentration of PCSK9 is $10^{14}$ molec./mL. The binding of PCSK9 with antibodies prevents its binding with LDLR and leads to the decrease in LDL/VLDL levels.
DOI: 10.6084/m9.figshare.19085639
title: Dataset for Mathematical Model of in vitro Hepatocellular Cholesterol and Lipoprotein Metabolism, fig. 7

description: A comparison of therapies with anti-PCSK9 antibodies and small-molecule inhibitors. Due to higher association rate and lower dissociation rate, application of the inhibitory molecules (red curve, set 1) at the same concentration as antibodies (blue curve, set 2) leads to a faster and stronger decrease in the LDL level.
DOI: 10.6084/m9.figshare.19085645
title: Dataset for Mathematical Model of in vitro Hepatocellular Cholesterol and Lipoprotein Metabolism, fig. 8

description: Combined therapy with statins and anti-PCSK9 agents might demonstrate additive effects on LDL and VLDL levels.
DOI: 10.6084/m9.figshare.19085612
title: Impacts of insect frass and cadavers on litter decomposition along a tropical forest temperature gradient dataset

description: Dataset (mass loss, % carbon, % nitrogen) used for article, "Impacts of insect frass and cadavers on litter decomposition along a tropical forest temperature gradient"
DOI: 10.6084/m9.figshare.19085612.v1
title: Impacts of insect frass and cadavers on litter decomposition along a tropical forest temperature gradient dataset

description: Dataset (mass loss, % carbon, % nitrogen) used for article, "Impacts of insect frass and cadavers on litter decomposition along a tropical forest temperature gradient"
DOI: 10.6084/m9.figshare.7558649
title: ParyatanVyavsayvadEvamManavPrasnnata.pdfDaridra Vyaktiyon Kee SamasyayenDr. NEETU SINGH TOMAR, Post Doctoral Fellow, University Grant Commission New Delhi

description: Paryatan Vyavsayvad Evam Manav Prasnnata
DOI: 10.6084/m9.figshare.7558649.v3
title: ParyatanVyavsayvadEvamManavPrasnnata.pdfDaridra Vyaktiyon Kee SamasyayenDr. NEETU SINGH TOMAR, Post Doctoral Fellow, University Grant Commission New Delhi

description: Paryatan Vyavsayvad Evam Manav Prasnnata
DOI: 10.6084/m9.figshare.7558649.v2
title: ParyatanVyavsayvadEvamManavPrasnnata.pdfDaridra Vyaktiyon Kee Samasyayen

description: Paryatan Vyavsayvad Evam Manav Prasnnata
DOI: 10.34740/kaggle/dsv/3104970
title: LUFlow Network Intrusion Detection Data Set
DOI: 10.25678/0005bq
title: Data for: Strong selection and high mutation supply characterize experimental Chlorovirus evolution

description: Characterizing how viruses evolve expands our understanding of the underlying fundamental processes, such as mutation, selection and drift. One group of viruses whose evolution has not yet been extensively studied are the Phycodnaviridae, a globally abundant family of aquatic large dsDNA viruses. Here we studied the evolutionary change of Paramecium bursaria Chlorella Virus 1 (PBCV-1) during experimental coevolution with its algal host. We used pooled genome sequencing of six independently evolved populations to characterize genomic change over five time points. Across six experimental replicates involving either strong or weak demographic fluctuations, we found single nucleotide polymorphisms (SNPs) at 67 sites. The occurrence of genetic variants was highly repeatable, with just two of the SNPs found in only a single experimental replicate. Three genes A122/123R, A140/145R and A540L showed an excess of variable sites, providing new information about potential targets of selection during Chlorella-Chlorovirus coevolution. Our data indicated that the studied populations were not mutation-limited and experienced strong positive selection. Our investigation highlighted relevant processes governing the evolution of aquatic large dsDNA viruses, which ultimately contributes to a better understanding of the functioning of natural aquatic ecosystems.
DOI: 10.15151/esrf-es-652903512
title: Discovering an apoptotic octamer SARM1 ring

description: This continuing project aims to discover the activation mechanism(s) of SARM1. Recently, we determined the 3D structure of the SARM1 ring octamer in an inhibitory conformation, and found that SARM1 is kept inactive through a ‘substrate inhibition’ mechanism, where NAD+ stabilizes the tightly packed, inhibited conformation of the protein. In this way, SARM1 activation is directly triggered by a decrease in the concentration of NAD+ (a hallmark of several stress conditions), and not necessarily only by the introduction of an activating factor. Very recently, we have also determined the cryo EM structure of SARM1 in a metastable duplex conformation, induced by a new inhibitor that we have discovered. These recent findings are now submitted for publication to eLife. The expected results will reveal how the structure and activity of SARM1 have evolved during evolution, and will contribute to our understanding of SARM1 - mediated neurodegeneration.
DOI: 10.5517/ccdc.csd.cc203fwg
title: CCDC 1850355: Experimental Crystal Structure Determination

description: Related Article: Janice Dahmer, Patricia Marangon, Luciana O. Adolpho, Frederico L. Reis, Graciela Maldaner, Robert A. Burrow, Marco A. Mostardeiro, Ionara I. Dalcol, Ademir F. Morel|2022|Phytochemistry|196|113071|doi:10.1016/j.phytochem.2021.113071
DOI: 10.5517/ccdc.csd.cc26199w
title: CCDC 2027037: Experimental Crystal Structure Determination

description: Related Article: Eric M. Johnson, Jeffrey J. Liu, Adam D. Samuel, Ralf Haiges, Smaranda C. Marinescu|2022|Inorg.Chem.|61|1316|doi:10.1021/acs.inorgchem.1c02636
DOI: 10.5517/ccdc.csd.cc26xhl7
title: CCDC 2053179: Experimental Crystal Structure Determination

description: Related Article: Ab Majeed Ganai, Tabasum Khan Pathan, Nisar Sayyad, Babita Kushwaha, Narva Deshwar Kushwaha, Andreas G. Tzakos, Rajshekhar Karpoormath|2022|RSC Advances|12|2102|doi:10.1039/D1RA07749J
DOI: 10.6084/m9.figshare.9943274.v4
title: DIET-DlEd-Oct-2019-10-06

description: LETTER REGARDING "PRACHARY-SHIKSHAK HEEN Evam SHIKSHAN-PPASHIKSHAN VIHEEN DEGREE COLLEGON MEN SANCHALIT D. El. Ed. PATHYAKRAMON MEN MANKEEY SHIKSHAN Ke JABARDAST UPEKSHA AUR PAREEKSHA NAKAL-PASS KE GARANTEE Se PRABAVIT CHHATRON Ke HITON-BHAVISYA KEE SURAKSHA HETU"
DOI: 10.6084/m9.figshare.9943274
title: DIET-DlEd-Oct-2019-10-06

description: LETTER REGARDING "PRACHARY-SHIKSHAK HEEN Evam SHIKSHAN-PPASHIKSHAN VIHEEN DEGREE COLLEGON MEN SANCHALIT D. El. Ed. PATHYAKRAMON MEN MANKEEY SHIKSHAN Ke JABARDAST UPEKSHA AUR PAREEKSHA NAKAL-PASS KE GARANTEE Se PRABAVIT CHHATRON Ke HITON-BHAVISYA KEE SURAKSHA HETU"
DOI: 10.6084/m9.figshare.19085771
title: Supplementary Material for: Therapeutic Approach for Recurrent Focal Segmental Glomerulosclerosis in Pediatric Renal Transplant Recipients: A Single-Center Experience

description: <b><i>Introduction:</i></b> Recurrence of focal segmental glomerulosclerosis (FSGS) after kidney transplantation (KTx) develops in 40% of patients, leading to graft loss in half of cases. Extracorporeal apheretic treatments, combined with immunosuppressive drugs, seem to be the most promising therapies, but at now limited reports are available, mainly in pediatric patients. <b><i>Objective:</i></b> We aimed to assess the efficacy of immunoadsorption (IA) to treat recurrent FSGS in pediatric patients. <b><i>Methods:</i></b> We report a case series of 4 pediatric patients (aged 4–12 years) followed at our institution for early recurrent FSGS after KTx. FSGS recurrence was treated with early and intensive apheretic treatments IA. <b><i>Results:</i></b> After IA initiation, a partial remission (PR) of proteinuria at 24-month follow-up was achieved only in 1 patient. The others showed a mild reduction of nephrotic proteinuria, without PR, but gained a significant improvement in clinical signs of nephrotic syndrome (reduction of edema, increased serum albumin, and total protein levels). After a median follow-up of 38 (22–48) months, renal function was almost stable over time in all patients, except one who returned to hemodialysis after 22 months. No severe IA-related complications occurred. <b><i>Conclusions:</i></b> According to our clinical experience, IA revealed as a safe and effective therapy to treat patients with recurrent FSGS after KTx and it could maintain stable renal function in 75% of patients.
DOI: 10.6084/m9.figshare.15170582
title: Geographic pattern in the community structure of arboreal insects in beech forests in northern Japan

description: Forest ecosystems have high biodiversity with ecologically diverse animals and plants. The forest canopy supports high biodiversity, and canopy insects are important components owing to their high species richness and abundance. Although many studies have investigated the vertical stratification of arboreal insects, the formation process of geographic patterns in the arboreal insect community structure is not well understood. We analyzed arboreal insect communities in Japanese beech forests in northern Japan to examine their formation process of geographic pattern with geographic distance. We set eight study sites and collected insects monthly from June to September 2015 and 2016. We collected 2070 individuals from 479 species in 14 orders. We tested for nested structure in communities by distance and examined the correlation between the geographic distance and the dissimilarity of community structure. The insect community structure was nested by distance. When we classified insects by order into herbivore or carnivore, we found a positive correlation in herbivorous Hemiptera, while we were not able to find any correlations in other taxa. We collected a number of arboreal insect species that also occur in southern Japan at some sites. These results suggest that the arboreal insect communities in northern Japan change with geographic distance because they include taxa with a poor dispersal ability and some species from the southern beech forest along with the mountain area.
DOI: 10.6084/m9.figshare.17118533
title: Characteristics of <i>Cenococcum geophilum</i> sclerotia found in steppe forest soil in Mongolia

description: Sclerotia are the resting bodies of fungi. The exact biochemical properties of melanized sclerotia that allow them to remain in the soil and retain their structure are unclear. Sclerotium grains were collected from Mongolian steppe forest soils to elucidate the characteristics of melanized sclerotia in semi-arid areas. The collected sclerotia were characterized as derived from <i>Cenococcum geophilum</i> based on similarities in the ITS1-5.8S-ITS2 region. Using accelerator mass spectrometry <sup>14</sup>C/<sup>12</sup>C measurement, the mean residual time of the sclerotium in the soil was estimated to be 40 years. The H<sub>2</sub>O content of the grains was 10%, and the major element compositions were 43% C, 39% O (with H), and 1.8% N. Scanning electron microscope-energy dispersive X-ray spectrometry analysis showed that C, O, and Ca were the dominant elements and Al, K, and Mg were distributed homogeneously in the grain, while Ca and P specifically coexisted in cell compartments in the form of Ca-phosphate (hydroxyapatite) with a concentric location inside the grains. Hydroxyapatite precipitation in sclerotia may suggest a form of P sequestration in slightly alkaline soils.