cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/uschist-ouc12569571
title: Bovard Administration Building, USC, 1950s-2008

description: 57 photographs of George Finley Bovard Administration Building, University Avenue and later 3551 Trousdale Parkway, University of Southern California, 1950s, 1997, 2002, 2004, 2005, 2006, & 2008. Images include busy pedestrian and automobile traffic in front of the building in the 1950s, students posing and talking near the building, iconic and striking images of the main tower at day and at night, a 360-degree view, the adjacent student union building and the tower of Waite Phillips Hall, and the skyscrapers of downtown Los Angeles in the background. Credits: #3/18 copyright Accusoft; #7/5, #7/6, #7/10, #7/11, #7/12, #7/16, #7/24, #7/27 by Dietmar Quistorf; #8/5, #8/7, #8/10, #8/11, #8/12, #8/13, #8/50, #8/120, #8/127, #8/128, #8/129, #8/135; #8/136, #8/137, #8/139, #8/140, #8/143, #8/144, #8/146, #8/147, #8/171, #8/178, #8/191, #9/192, #62/66 by Philip Channing; #62/109, #62/111 uncredited.
DOI: 10.25549/uschist-c104-284358
title: Waite Phillips Hall, USC, 2004-2008

description: 10 photographs of Waite Phillips Hall of Education, 3470 Trousdale Parkway, University of Southern California, 2004-2006 & 2008. Also visible are the reflecting pool in front of Leavey Library, Bovard Administration Building, the Von Kleinsmid Center, and Birnkrant Residence Hall. Credits: photos #8/33, #8/131, #8/184, #8/185 by Philip Channing; photos #7/7, #7/8, #7/9, #7/13 by Dietmar Quistorf.
DOI: 10.35079/hbm894.wjhc.685
title: LC-MS data from the kidney (left) of a 65-year-old white male
DOI: 10.25549/uschist-c104-284359
title: Waite Phillips Hall, USC, 2004-2008

description: 10 photographs of Waite Phillips Hall of Education, 3470 Trousdale Parkway, University of Southern California, 2004-2006 & 2008. Also visible are the reflecting pool in front of Leavey Library, Bovard Administration Building, the Von Kleinsmid Center, and Birnkrant Residence Hall. Credits: photos #8/33, #8/131, #8/184, #8/185 by Philip Channing; photos #7/7, #7/8, #7/9, #7/13 by Dietmar Quistorf.
DOI: 10.25549/uschist-c104-284360
title: Waite Phillips Hall, USC, 2004-2008

description: 10 photographs of Waite Phillips Hall of Education, 3470 Trousdale Parkway, University of Southern California, 2004-2006 & 2008. Also visible are the reflecting pool in front of Leavey Library, Bovard Administration Building, the Von Kleinsmid Center, and Birnkrant Residence Hall. Credits: photos #8/33, #8/131, #8/184, #8/185 by Philip Channing; photos #7/7, #7/8, #7/9, #7/13 by Dietmar Quistorf.
DOI: 10.35079/hbm449.zzwr.468
title: LC-MS data from the kidney (left) of a 66-year-old white female
DOI: 10.25549/uschist-ouc12569748
title: Bovard Administration Building, USC, 1950s-2008

description: 57 photographs of George Finley Bovard Administration Building, University Avenue and later 3551 Trousdale Parkway, University of Southern California, 1950s, 1997, 2002, 2004, 2005, 2006, & 2008. Images include busy pedestrian and automobile traffic in front of the building in the 1950s, students posing and talking near the building, iconic and striking images of the main tower at day and at night, a 360-degree view, the adjacent student union building and the tower of Waite Phillips Hall, and the skyscrapers of downtown Los Angeles in the background. Credits: #3/18 copyright Accusoft; #7/5, #7/6, #7/10, #7/11, #7/12, #7/16, #7/24, #7/27 by Dietmar Quistorf; #8/5, #8/7, #8/10, #8/11, #8/12, #8/13, #8/50, #8/120, #8/127, #8/128, #8/129, #8/135; #8/136, #8/137, #8/139, #8/140, #8/143, #8/144, #8/146, #8/147, #8/171, #8/178, #8/191, #9/192, #62/66 by Philip Channing; #62/109, #62/111 uncredited.
DOI: 10.35079/hbm295.mxqw.563
title: LC-MS data from the kidney (left) of a 66-year-old white male
DOI: 10.25549/uschist-ouc12569664
title: Bovard Administration Building, USC, 1950s-2008

description: 57 photographs of George Finley Bovard Administration Building, University Avenue and later 3551 Trousdale Parkway, University of Southern California, 1950s, 1997, 2002, 2004, 2005, 2006, & 2008. Images include busy pedestrian and automobile traffic in front of the building in the 1950s, students posing and talking near the building, iconic and striking images of the main tower at day and at night, a 360-degree view, the adjacent student union building and the tower of Waite Phillips Hall, and the skyscrapers of downtown Los Angeles in the background. Credits: #3/18 copyright Accusoft; #7/5, #7/6, #7/10, #7/11, #7/12, #7/16, #7/24, #7/27 by Dietmar Quistorf; #8/5, #8/7, #8/10, #8/11, #8/12, #8/13, #8/50, #8/120, #8/127, #8/128, #8/129, #8/135; #8/136, #8/137, #8/139, #8/140, #8/143, #8/144, #8/146, #8/147, #8/171, #8/178, #8/191, #9/192, #62/66 by Philip Channing; #62/109, #62/111 uncredited.
DOI: 10.5281/zenodo.15672651
title: EnzyBase12k

description: EnzyBase12k: A curated enzyme dataset for catalytic pH optimum prediction

EnzyBase12k is a curated dataset integrating structural and sequential information with experimentally determined catalytic pH optima. It contains 11,615 enyzmes structures (CIF format) predicted with AlphaFold with or without template mode. The EnzyBase12k_metadata.csv contains UniProt ID, (cut/uncut) UniProt Sequence, catalytic pH optimum, structure source, if PDB structure matching to the UniProt sequence was available and further information. The dataset contains monomers and homopolymers; heteromers were excluded. Homopolymers were reduced to one enzyme subunit and handledcas monomer.

 

### License

This dataset integrates third-party data from the following sources:

UniProt sequences were obtained from https://www.uniprot.org/ [CC BY 4.0]

PDB structures were obtained from https://rcsb.org [CC0 1.0 Universal]

AlphaFold2 models were downloaded from https://alphafold.ebi.ac.uk/ [CC BY 4.0]

AlphaFold3 models predicted using AlphaFold v3.0.1, https://github.com/google-deepmind/alphafold3 [CC-BY-NC-SA 4.0]

The metadata ('EnzyBase12k_metadata.csv') and the dataset curation process (including filtering, structure selection and sequence mapping)are licensed by the author under [CC BY-NC 4.0].

---

*Note: This dataset was curated as part of the Master's thesis 'Development of Graph Neural Networks (GNNs) for Predicting Enzymatic pH Optima' and is not yet peer-reviewed.*
DOI: 10.5281/zenodo.15672650
title: EnzyBase12k

description: EnzyBase12k: A curated enzyme dataset for catalytic pH optimum prediction

EnzyBase12k is a curated dataset integrating structural and sequential information with experimentally determined catalytic pH optima. It contains 11,615 enyzmes structures (CIF format) predicted with AlphaFold with or without template mode. The EnzyBase12k_metadata.csv contains UniProt ID, (cut/uncut) UniProt Sequence, catalytic pH optimum, structure source, if PDB structure matching to the UniProt sequence was available and further information. The dataset contains monomers and homopolymers; heteromers were excluded. Homopolymers were reduced to one enzyme subunit and handledcas monomer.

 

### License

This dataset integrates third-party data from the following sources:

UniProt sequences were obtained from https://www.uniprot.org/ [CC BY 4.0]

PDB structures were obtained from https://rcsb.org [CC0 1.0 Universal]

AlphaFold2 models were downloaded from https://alphafold.ebi.ac.uk/ [CC BY 4.0]

AlphaFold3 models predicted using AlphaFold v3.0.1, https://github.com/google-deepmind/alphafold3 [CC-BY-NC-SA 4.0]

The metadata ('EnzyBase12k_metadata.csv') and the dataset curation process (including filtering, structure selection and sequence mapping)are licensed by the author under [CC BY-NC 4.0].

---

*Note: This dataset was curated as part of the Master's thesis 'Development of Graph Neural Networks (GNNs) for Predicting Enzymatic pH Optima' and is not yet peer-reviewed.*
DOI: 10.25549/uschist-c104-286114
title: Von Kleinsmid Center, USC, 1997-2008

description: 25 photographs of the Von Kleinsmid Center for International and Public Affairs, 3518 Trousdale Parkway, University of Southern California, 1997, 2004-2006 & 2008. Included are images of the tower, the atrium, the international flags, and views from across the reflecting pool in front of Leavey Library. Credits: photos #8/24, #8/62, #8/70, #8/138, #8/195, #8/196, #8/197, #8/198, #8/199, #8/200 by Philip Channing; photos #7/18, #7/22, #7/23 by Dietmar Quistorf; #62/110 uncredited.
DOI: 10.35079/hbm744.vzbt.635
title: LC-MS data from the kidney (left) of a 43-year-old white female
DOI: 10.25549/uschist-c104-284192
title: Commencement, USC, 1994-2004

description: 9 photographs of commencement at the University of Southern California, 1997, 2002, & 2004. Included are the Alumni Park walkway between Bovard and Doheny (1997 May & 2002 October 29 -- two different color corrections), happy graduates (1997 May) (2004 May 14 photos by Philip Channing), stacks of diplomas (1997 May), and George Lucas with Stephen Spielberg in academic regalia (1994 May 6).
DOI: 10.5281/zenodo.18701889
title: VISDB 2.0: A comprehensive resource of viral integration sites and their regulatory landscapes in human diseases

description: The integration of viral DNA into the human genome plays a crucial role in the onset and progression of various diseases, particularly cancers. Such integration events can disrupt host gene regulation, alter chromatin organization, and induce genomic instability. VISDB 2.0 represents a comprehensive and updated version of the original VISDB database, systematically cataloging viral integration sites (VISs) and their functional annotations.

This release contains over 270,000 curated VISs from 11 human-associated viruses, encompassing both retroviruses (n = 4) and DNA viruses (n = 7). The data were curated from 209 peer-reviewed publications, representing a 3.5-fold expansion compared to the previous VISDB release. Each integration site has been annotated with genomic context, including target genes, CpG islands, fragile sites, repetitive elements, and key epigenomic features.

Folder Overview



Virus integration sites (VISs):TSV files providing genomic coordinates and metadata for each viral integration event from 11 human viruses.

Target genes:CSV files providing host target genes associated with viral integration events for each virus, including a consolidated list of hotspot genes recurrent across multiple viral species.



Drug targets:Text files listing host–virus drug targets for each of the 11 viruses.




GO:Pathway enrichment:CSV files containing Gene Ontology and KEGG pathway enrichment analyses of VIS target genes.


VIS annotation:Files detailing integration overlaps with CpG islands, fragile sites, and repeat elements within 1 kb and 10 kb flanking regions.

VIS motifs:CSV files showing enriched sequence motifs near viral integration sites, identified per virus.




Regulatory overlaps:Data describing VISs overlaps with genomic regulatory regions, disease-associated variants, and annotated genomic elements.






ncRNA interactions:CSV files listing lncRNA and miRNA interactions associated with each VISs and their target genes.
DOI: 10.25549/uschist-c104-286538
title: Physical Education Building, USC, 1997-2008

description: 8 photographs of the Physical Education Building, 3560 Watt Way, University of Southern California, 1997, 2004, & 2008. Locations in and around the building are included. Credits: photos #7/14, #7/15 by Dietmar Quistorf.
DOI: 10.35079/hbm667.bjcc.825
title: LC-MS data from the kidney (left) of a 70-year-old white male
DOI: 10.25549/uschist-c104-282866
title: Bridge Hall, USC, 1997-2005

description: 3 photographs of Bridge Memorial Hall (Marshall School of Business), 3670 Trousdale Parkway, University of Southern California, 1997 & 2005 December 7.
DOI: 10.25549/uschist-c104-286767
title: Students and professors in learning interior environments, USC, 1997-2006

description: 69 photographs of students and professors inside various buildings at the University of Southern California, 1997, 2002 August 29, 2004 June 21, 2005 October 3, 2006 March 1, & 2006 April 6. Students are shown studying, talking and learning in social locations, hallways, libraries, computer labs, lecture halls, classrooms, laboratories, and dormatories. Credit: photo #8/173 by Philip Channing.
DOI: 10.35079/hbm696.pzhz.579
title: LC-MS data from the kidney (right) of a 54-year-old white female
DOI: 10.25549/uschist-c104-286354
title: Pertusati University Bookstore, USC, 1997

description: 5 photographs of the interior of the Pertusati University Bookstore, 840 Childs Way, University of Southern California, 1997. Included are images of clothing, computers, escalators, and magazines.
DOI: 10.25549/uschist-c104-286358
title: Pertusati University Bookstore, USC, 1997

description: 5 photographs of the interior of the Pertusati University Bookstore, 840 Childs Way, University of Southern California, 1997. Included are images of clothing, computers, escalators, and magazines.
DOI: 10.35079/hbm655.xfxd.295
title: LC-MS data from the kidney (right) of a 64-year-old white female
DOI: 10.25549/uschist-ouc12569731
title: Bovard Administration Building, USC, 1950s-2008

description: 57 photographs of George Finley Bovard Administration Building, University Avenue and later 3551 Trousdale Parkway, University of Southern California, 1950s, 1997, 2002, 2004, 2005, 2006, & 2008. Images include busy pedestrian and automobile traffic in front of the building in the 1950s, students posing and talking near the building, iconic and striking images of the main tower at day and at night, a 360-degree view, the adjacent student union building and the tower of Waite Phillips Hall, and the skyscrapers of downtown Los Angeles in the background. Credits: #3/18 copyright Accusoft; #7/5, #7/6, #7/10, #7/11, #7/12, #7/16, #7/24, #7/27 by Dietmar Quistorf; #8/5, #8/7, #8/10, #8/11, #8/12, #8/13, #8/50, #8/120, #8/127, #8/128, #8/129, #8/135; #8/136, #8/137, #8/139, #8/140, #8/143, #8/144, #8/146, #8/147, #8/171, #8/178, #8/191, #9/192, #62/66 by Philip Channing; #62/109, #62/111 uncredited.
DOI: 10.25549/uschist-c104-285294
title: Youth Triumphant fountain, USC, 1997-2008

description: 20 photographs of the Youth Triumphant fountain (Prentiss Memorial Fountain), on the walkway in Alumni Park between Bovard and Doheny, University of Southern California, 1997, 2004, 2006, & 2008. Credits: photos #8/6, #8/8, #8/9, #8/20, #8/21, #8/26, #8/141, #8/142, #8/159, #8/160, #8/166, #8/167 by Philip Channing; photos #7/1, #7/2, #7/3, #7/4, #7/25, #7/26 by Deitmar Quistorf.
DOI: 10.35079/hbm367.gxzp.532
title: LC-MS data from the kidney (left) of a 67-year-old white female
DOI: 10.25549/uschist-c104-285280
title: Stoops Library, USC, 1997 & 2004

description: 3 photographs of Emery Stoops and Joyce-King Stoops Education Library, University of Southern California, 1997 & 2004 May 19. Two images are the same but different color correction. The building no longer held the Education Library and instad contained the East Asian Library by 2004. Credit: photo #8/39 by Philip Channing.
DOI: 10.5281/zenodo.18703368
title: Seismic Dataset for Vertical Crack Characterization in Concrete Using Impact Actuator

description: This dataset supports the validation of the linear impact actuator as a controlled seismic source and its application for characterizing vertical cracks in concrete structures at different depths. It consists of three main sections: (1) source validation data obtained using various brass adapters and tip types, (2) measurements from a concrete slab with embedded vertical cracks at depths of 6 cm, 12 cm, and 18 cm. The data were used to generate dispersion curves and to estimate the quality factor (Q), and (3) MATLAB scripts for post-processing, including bootstrap_for_Q_factor.m, are also provided.
DOI: 10.5281/zenodo.18703369
title: Seismic Dataset for Vertical Crack Characterization in Concrete Using Impact Actuator

description: This dataset supports the validation of the linear impact actuator as a controlled seismic source and its application for characterizing vertical cracks in concrete structures at different depths. It consists of three main sections: (1) source validation data obtained using various brass adapters and tip types, (2) measurements from a concrete slab with embedded vertical cracks at depths of 6 cm, 12 cm, and 18 cm. The data were used to generate dispersion curves and to estimate the quality factor (Q), and (3) MATLAB scripts for post-processing, including bootstrap_for_Q_factor.m, are also provided.
DOI: 10.25549/uschist-c104-287246
title: Doheny Memorial Library, USC, ca.1931-2009

description: 45 photographs of Edward L. Doheny Jr. Memorial Library, 3550 Trousdale Parkway, University of Southern California, ca.1931 (#3/31, #3/32), 1997, 2002 October 28 (#8/38), 2004 (#8/32 by Philip Channing), 2004 May 19 (#8/16, #8/19, #8/22, #8/23, #8/28,#8/48, #8/51, #8/52, #8/53, #8/63, #8/74, #8/77, #8/78 by Philip Channing), 2005 February 17 (#62/339 by Soo Shin, Warren Group), 2005 December 6 (#8/84), 2005 December 7 (#8/96, #8/98, #8/110, #8/112, #8/114) & 2006 January 24 (#8/121, #8/122 by Philip Channing), 2006 March 1 (#8/180, #8/181 by Philip Channing), 2006 May 3 (8/239), 2007 August 13 (#62/342, #62/343, #62/344 by Soo Shin, Warren Group), 2008 October 3 (#6/19, #6/99, #6/100), 2009 August 27 (#62/338, #62/340, #62/341, #62/345, #62/349 b7 Soo Shin, Warren Group), 2009 September 3 (#62/346, #62/347 by Soo Shin, Warren Group) & 2009 September 18 (#62/348 by Soo Shin, Warren Group). Images include the building under construction, interiors such as the Times Mirror Reading Room and the Feuchtwanger Memorial Library, exteriors of the building from various angles and architectural details such as doors, windows, walls, statuary, soffit, and other decorative features.
DOI: 10.35079/hbm328.hkfc.835
title: LC-MS data from the kidney (right) of a 56-year-old white male
DOI: 10.25549/uschist-c104-287247
title: Doheny Memorial Library, USC, ca.1931-2009

description: 45 photographs of Edward L. Doheny Jr. Memorial Library, 3550 Trousdale Parkway, University of Southern California, ca.1931 (#3/31, #3/32), 1997, 2002 October 28 (#8/38), 2004 (#8/32 by Philip Channing), 2004 May 19 (#8/16, #8/19, #8/22, #8/23, #8/28,#8/48, #8/51, #8/52, #8/53, #8/63, #8/74, #8/77, #8/78 by Philip Channing), 2005 February 17 (#62/339 by Soo Shin, Warren Group), 2005 December 6 (#8/84), 2005 December 7 (#8/96, #8/98, #8/110, #8/112, #8/114) & 2006 January 24 (#8/121, #8/122 by Philip Channing), 2006 March 1 (#8/180, #8/181 by Philip Channing), 2006 May 3 (8/239), 2007 August 13 (#62/342, #62/343, #62/344 by Soo Shin, Warren Group), 2008 October 3 (#6/19, #6/99, #6/100), 2009 August 27 (#62/338, #62/340, #62/341, #62/345, #62/349 b7 Soo Shin, Warren Group), 2009 September 3 (#62/346, #62/347 by Soo Shin, Warren Group) & 2009 September 18 (#62/348 by Soo Shin, Warren Group). Images include the building under construction, interiors such as the Times Mirror Reading Room and the Feuchtwanger Memorial Library, exteriors of the building from various angles and architectural details such as doors, windows, walls, statuary, soffit, and other decorative features.
DOI: 10.25549/uschist-c104-284882
title: Students outside, USC, 1997-2006

description: 42 photographs of students outside on the campus of the University of Southern California, 1997, 2004, & 2006. Students are shown talking, walking, studying, bicyling, practicing, posing, socializing, acting, and working primarily on campus. Credit: photos #8/47, #8/66, #8/67, #8/118, #8/157, #8/158, #8/163, #8/172, #8/182, #8/190, #8/203, #8/207 by Philip Channing.
DOI: 10.35079/hbm434.kwzx.747
title: LC-MS data from the kidney (left) of a 20-year-old white female
DOI: 10.5281/zenodo.18703349
title: TABLO - Human Blood and Tonsil T cells Cell Surface Protein Data

description: Cell Surface protein data for human T cells from tonsils and blood. Data are derived from 8 donors, independent of the 10 donors in the TABLO dataset. Raw gene expression and antibody matrices, and paired TCR data are provided. For donor-specific info, please refer to the *Hashing_meta.txt file.
DOI: 10.25549/uschist-c104-286755
title: Students and professors in learning interior environments, USC, 1997-2006

description: 69 photographs of students and professors inside various buildings at the University of Southern California, 1997, 2002 August 29, 2004 June 21, 2005 October 3, 2006 March 1, & 2006 April 6. Students are shown studying, talking and learning in social locations, hallways, libraries, computer labs, lecture halls, classrooms, laboratories, and dormatories. Credit: photo #8/173 by Philip Channing.
DOI: 10.5281/zenodo.18024169
title: TABLO - Human Blood and Tonsil T cells Cell Surface Protein Data

description: Cell Surface protein data for human T cells from tonsils and blood. Data are derived from 8 donors, independent of the 10 donors in the TABLO dataset. Raw gene expression and antibody matrices, and paired TCR data are provided. For donor-specific info, please refer to the *Hashing_meta.txt file.
DOI: 10.25549/uschist-c104-286759
title: Students and professors in learning interior environments, USC, 1997-2006

description: 69 photographs of students and professors inside various buildings at the University of Southern California, 1997, 2002 August 29, 2004 June 21, 2005 October 3, 2006 March 1, & 2006 April 6. Students are shown studying, talking and learning in social locations, hallways, libraries, computer labs, lecture halls, classrooms, laboratories, and dormatories. Credit: photo #8/173 by Philip Channing.
DOI: 10.35079/hbm793.fpnq.226
title: LC-MS data from the kidney (left) of a 68-year-old white male
DOI: 10.25549/uschist-c104-286770
title: Students and professors in learning interior environments, USC, 1997-2006

description: 69 photographs of students and professors inside various buildings at the University of Southern California, 1997, 2002 August 29, 2004 June 21, 2005 October 3, 2006 March 1, & 2006 April 6. Students are shown studying, talking and learning in social locations, hallways, libraries, computer labs, lecture halls, classrooms, laboratories, and dormatories. Credit: photo #8/173 by Philip Channing.
DOI: 10.25549/uschist-c104-286771
title: Students and professors in learning interior environments, USC, 1997-2006

description: 69 photographs of students and professors inside various buildings at the University of Southern California, 1997, 2002 August 29, 2004 June 21, 2005 October 3, 2006 March 1, & 2006 April 6. Students are shown studying, talking and learning in social locations, hallways, libraries, computer labs, lecture halls, classrooms, laboratories, and dormatories. Credit: photo #8/173 by Philip Channing.
DOI: 10.35079/hbm264.mlnn.254
title: LC-MS data from the kidney (right) of a 72-year-old white male
DOI: 10.25549/uschist-c104-285134
title: USC trustee delegation trip to China, 2006-05-25: Shanghai museum meal

description: 34 photographs of the University of Southern California trustee delegation in Shanghai, China, 2006 May 25. Visit to a furniture and sculpture museum, including a musical performance and a dance performance. Trustees and protocol contingent pictured include: Charles Bolden, George Boone, MaryLou Boone, Kathleen McCarthy, Frank Price, Katherine Price, Edward Roski, Gayle Roski, Valerie Sugar, David Tappan, William Wong, Jeff Zhao.
DOI: 10.25549/uschist-c104-286561
title: USC trustee delegation trip to China, 2006-05-25: Shanghai exteriors

description: 19 photographs of the University of Southern California trustee delegation in Shanghai, China, 2006 May 25. Exterior photographs. Trustees and protocol contingent pictured include: Marie Allen, William Allen, Joseph Boskovich, Dennis Dougherty, Elizabeth Garrett, Frank Price, Robert Rollo, Norene Zapanta. Photography by Elizabeth Garrett (102 series), William Allen (103 series).
DOI: 10.35079/hbm625.kcft.734
title: LC-MS data from the kidney (left) of a 74-year-old white female