cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6043477
title: DCSsim (simulated) and DCSsub (sub-sampled) ChIP-seq data from different chromosomes.

description: These data are the results from three independent runs of DCSsim and DCSsub for TF, sharp and broad mark signals in 50:50 regulation scenarios for mm10 chr1, chr8, chr11, chr19 and chrX. Simulated data from DCSsim: simulated_ChIP-seq_data.zip set1: TF 50:50 chr11<br> set4: TF 50:50 chr8<br> set7: TF 50:50 chrX<br> set10: TF 50:50 chr1<br> set22: TF 50:50 chr19 set2: Sharp mark 50:50 chr11<br> set5: Sharp mark 50:50 chr8<br> set8: Sharp mark 50:50 chrX<br> set11: Sharp mark 50:50 chr1<br> set23: Sharp mark 50:50 chr19 set3: Broad mark 50:50 chr11<br> set6: Broad mark 50:50 chr8<br> set9: Broad mark 50:50 chrX<br> set12: Broad mark 50:50 chr1<br> set24: Broad mark 50:50 chr19 <br> Sub-sampled data from DCSsub: sub-sampled_ChIP-seq_data.zip Set1: C/EBPa-ChIP-seq 50:50 chr11<br> Set2: C/EBPa-ChIP-seq 50:50 chr8<br> Set3: C/EBPa-ChIP-seq 50:50 chrX<br> Set4: C/EBPa-ChIP-seq 50:50 chr1 Set5: H3K27ac-ChIP-seq 50:50 chr11<br> Set6: H3K27ac-ChIP-seq 50:50 chr8<br> Set7: H3K27ac-ChIP-seq 50:50 chrX<br> Set8: H3K27ac-ChIP-seq 50:50 chr1 Set9: H3K36me3-ChIP-seq 50:50 chr11<br> Set10: H3K36me3-ChIP-seq 50:50 chr8<br> Set11: H3K36me3-ChIP-seq 50:50 chrX<br> Set12: H3K36me3-ChIP-seq 50:50 chr1 <br> C/EBPa-ChIP-seq 50:50 chr19 can be found in sub-sampled_ChIP-seq_data.zip of the FRIP data set (DOI: 10.5281/zenodo.6042902 set8)<br> H3K27ac-ChIP-seq 50:50 chr19 can be found in sub-sampled_ChIP-seq_data.zip of the FRIP data set (DOI: 10.5281/zenodo.6042902 set9)<br> H3K36me3-ChIP-seq 50:50 chr19 can be found in sub-sampled_ChIP-seq_data.zip of the FRIP data set (DOI: 10.5281/zenodo.6042902 set10)
description: {"references": ["Eder, T., Grebien, F. Comprehensive assessment of differential ChIP-seq tools guides optimal algorithm selection. Genome Biol 23, 119 (2022). https://doi.org/10.1186/s13059-022-02686-y"]}
DOI: 10.48370/ofd/c0abpp
title: Myodes glareolus - 26030, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1961-09-20, in: Białowieża National Park, Poland. Material type:
DOI: 10.5281/zenodo.6043476
title: DCSsim (simulated) and DCSsub (sub-sampled) ChIP-seq data from different chromosomes.

description: These data are the results from three independent runs of DCSsim and DCSsub for TF, sharp and broad mark signals in 50:50 regulation scenarios for mm10 chr1, chr8, chr11, chr19 and chrX. Simulated data from DCSsim: simulated_ChIP-seq_data.zip set1: TF 50:50 chr11<br> set4: TF 50:50 chr8<br> set7: TF 50:50 chrX<br> set10: TF 50:50 chr1<br> set22: TF 50:50 chr19 set2: Sharp mark 50:50 chr11<br> set5: Sharp mark 50:50 chr8<br> set8: Sharp mark 50:50 chrX<br> set11: Sharp mark 50:50 chr1<br> set23: Sharp mark 50:50 chr19 set3: Broad mark 50:50 chr11<br> set6: Broad mark 50:50 chr8<br> set9: Broad mark 50:50 chrX<br> set12: Broad mark 50:50 chr1<br> set24: Broad mark 50:50 chr19 <br> Sub-sampled data from DCSsub: sub-sampled_ChIP-seq_data.zip Set1: C/EBPa-ChIP-seq 50:50 chr11<br> Set2: C/EBPa-ChIP-seq 50:50 chr8<br> Set3: C/EBPa-ChIP-seq 50:50 chrX<br> Set4: C/EBPa-ChIP-seq 50:50 chr1 Set5: H3K27ac-ChIP-seq 50:50 chr11<br> Set6: H3K27ac-ChIP-seq 50:50 chr8<br> Set7: H3K27ac-ChIP-seq 50:50 chrX<br> Set8: H3K27ac-ChIP-seq 50:50 chr1 Set9: H3K36me3-ChIP-seq 50:50 chr11<br> Set10: H3K36me3-ChIP-seq 50:50 chr8<br> Set11: H3K36me3-ChIP-seq 50:50 chrX<br> Set12: H3K36me3-ChIP-seq 50:50 chr1 <br> C/EBPa-ChIP-seq 50:50 chr19 can be found in sub-sampled_ChIP-seq_data.zip of the FRIP data set (DOI: 10.5281/zenodo.6042902 set8)<br> H3K27ac-ChIP-seq 50:50 chr19 can be found in sub-sampled_ChIP-seq_data.zip of the FRIP data set (DOI: 10.5281/zenodo.6042902 set9)<br> H3K36me3-ChIP-seq 50:50 chr19 can be found in sub-sampled_ChIP-seq_data.zip of the FRIP data set (DOI: 10.5281/zenodo.6042902 set10)
description: {"references": ["Eder, T., Grebien, F. Comprehensive assessment of differential ChIP-seq tools guides optimal algorithm selection. Genome Biol 23, 119 (2022). https://doi.org/10.1186/s13059-022-02686-y"]}
DOI: 10.48370/ofd/gnqjoi
title: Myodes glareolus - 34674, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-01-25, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/41ok7r
title: Myodes glareolus - 51961, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1966-05-05, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/6opdqf
title: Myodes glareolus - 111062, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1973-09-30, in: Białowieża National Park, Poland. Material type:
DOI: 10.5281/zenodo.5005654
title: DCSsim (simulated) and DCSsub (sub-sampled) ChIP-seq data for benchmarking DCS tools.

description: These data are the results from five independent runs of DCSsim and DCSsub for TF, sharp and broad mark signals in 50:50 and 100:0 regulation scenarios. Simulated data from DCSsim: simulated_ChIP-seq_data.zip Set1: TF 50:50 Set2: TF 100:0 Set3: Sharp mark 50:50 Set4: Sharp mark 100:0 Set5: Broad mark 50:50 Set6: Broad mark 100:0 Sub-sampled data from DCSsub: sub-sampled_ChIP-seq_data.zip Set1: Cebpa-ChIP-seq 50:50 Set2: Cebpa-ChIP-seq 100:0 Set3: H3K27ac-ChIP-seq 50:50 Set4: H3K27ac-ChIP-seq 100:0 Set5: H3K36me3-ChIP-seq 50:50 Set6: H3K36me3-ChIP-seq 100:0
description: {"references": ["Eder, T., Grebien, F. Comprehensive assessment of differential ChIP-seq tools guides optimal algorithm selection. Genome Biol 23, 119 (2022). https://doi.org/10.1186/s13059-022-02686-y"]}
DOI: 10.48370/ofd/oq4ig7
title: Myodes glareolus - 73815, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-05-02, in: Białowieża National Park, Poland. Material type:
DOI: 10.5281/zenodo.5005653
title: DCSsim (simulated) and DCSsub (sub-sampled) ChIP-seq data for benchmarking DCS tools.

description: These data are the results from five independent runs of DCSsim and DCSsub for TF, sharp and broad mark signals in 50:50 and 100:0 regulation scenarios. Simulated data from DCSsim: simulated_ChIP-seq_data.zip Set1: TF 50:50 Set2: TF 100:0 Set3: Sharp mark 50:50 Set4: Sharp mark 100:0 Set5: Broad mark 50:50 Set6: Broad mark 100:0 Sub-sampled data from DCSsub: sub-sampled_ChIP-seq_data.zip Set1: Cebpa-ChIP-seq 50:50 Set2: Cebpa-ChIP-seq 100:0 Set3: H3K27ac-ChIP-seq 50:50 Set4: H3K27ac-ChIP-seq 100:0 Set5: H3K36me3-ChIP-seq 50:50 Set6: H3K36me3-ChIP-seq 100:0
description: {"references": ["Eder, T., Grebien, F. Comprehensive assessment of differential ChIP-seq tools guides optimal algorithm selection. Genome Biol 23, 119 (2022). https://doi.org/10.1186/s13059-022-02686-y"]}
DOI: 10.48370/ofd/dnrfs6
title: Myodes glareolus - 168026, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 2001-09-18, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/jmlws2
title: Myodes glareolus - 1003, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1953-05-31, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/xkbkko
title: Myodes glareolus - 85510, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1969-05-27, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/dsbkuf
title: Myodes glareolus - 4822, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1954-06-28, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/mvuxgu
title: Myodes glareolus - 148616, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1983-09-18, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/eeir2g
title: Myodes glareolus - 90673, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1970-05-15, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/bvq0fc
title: Myodes glareolus - 11528, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-07-24, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/a3cxpm
title: Myodes glareolus - 13808, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-09-09, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/oqyjdc
title: Myodes glareolus - 164558, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1996-09-21, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/zfyxeh
title: Myodes glareolus - 114084, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1974-07-05, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/tonbgh
title: Myodes glareolus - 44334, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1965-07-02, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/4p4vj4
title: Myodes glareolus - 40355, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-10-09, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/5ooixg
title: Myodes glareolus - 81222, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-09-19, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/hw0ljm
title: Myodes glareolus - 115247, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1974-09-18, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/uuqinl
title: Myodes glareolus - 13943, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-09-12, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/0ca6xp
title: Myodes glareolus - 74016, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-05-08, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/hssozq
title: Myodes glareolus - 7142, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1954-11-07, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/0ldflz
title: Myodes glareolus - 166169, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1997-07-15, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/nfta30
title: Myodes glareolus - 163856, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1988-10-25, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/nayap1
title: Myodes glareolus - 23990, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1960-09-19, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/rmjjgy
title: Myodes glareolus - 9019, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-06-16, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/4ihsnd
title: Myodes glareolus - 104510, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1972-04-17, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/gunedq
title: Myodes glareolus - 90788, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1970-05-27, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/g1pxmb
title: Myodes glareolus - 51323, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1966-03-09, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/uhkf6m
title: Myodes glareolus - 159078, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1990-05-12, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/yzyz4x
title: Myodes glareolus - 72725, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-04-19, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/cdlq2f
title: Myodes glareolus - 162914, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1993-09-18, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/vpnj7n
title: Myodes glareolus - 4540, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1954-06-10, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/jea8uc
title: Myodes glareolus - 99647, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1971-10-12, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/jze9xu
title: Myodes glareolus - 152794, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1986-07-04, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/xqhmko
title: Myodes glareolus - 31344, Zoological collection of the Mammal Research Institute, PAS

description: Myodes glareolus (Bank vole) from Zoological collection of the Mammal Research Institute, PAS. Collected 1963-02-21, in: Białowieża National Park, Poland. Material type:
DOI: 10.15156/bio/sh129689.07fu
title: SH129689.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh129690.07fu
title: SH129690.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh129691.07fu
title: SH129691.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh129692.07fu
title: SH129692.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh129693.07fu
title: SH129693.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh129694.07fu
title: SH129694.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.