cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4117796
title: Code & Data from: Development of a low cost open-source ultrasonic device for plant height measurements

description: We here provide code and data for the study "Development of a low cost open-source ultrasonic device for plant height measurements" Code:<br> - Arduino code (management of the electronic circuit): "Arduino_ultrasonic_sensor.ino"<br> - OpenSCAD code (3D-printing): "3DShells_ultrasonic_sensor.scad"<br> - R code (statistical analysis of field test): "Statistical_analysis.R" Data:<br> - "manual_vs_sensor_controlled.csv": this file contains the comparison between the ultrasonic device and the ruler in standardized laboratory conditions. It has three columns: "manual_value", the height value measured manually; "sensor_value", the height value obtained from the ultrasonic device; "height_range", the interval to which the height value belongs (we worked with 25 cm intervals).<br> - "manual_vs_ruler_field.csv": this file contains the comparison between the ultrasonic device and the ruler in field conditions. Plant height measurements were performed on 26 sorghum genotypes. The file has four columns: "Genotype", the id of the measured genotype; "rep" the replicate (3 plants were measured for each genotype); "manual_value", the height value measured manually; "sensor_value", the height value obtained from the ultrasonic device. When using the ruler, the operator spent 15 min and 23 s to complete all measurements in the field, and 3 min and 27 s to enter all data manually in a digital file. When using the sensor, the operator spent 10 min and 52 s to complete all measurements in the field, and manual transcription was not needed since all measurements are instantaneously saved on an SD card. More details on the experimental data can be found in the article "Development of a low cost open-source ultrasonic device for plant height measurements". We also provide a tutorial to explain how to build the ultrasonic-sensor ("tutorial.docx")
DOI: 10.17632/frfrj8wpbk.1
title: Twister: Construction and structural relaxation of commensurate moiré superlattices

description: Introduction of a twist between layers of two-dimensional materials which leads to the formation of a moiré pattern is an emerging pathway to tune the electronic, vibrational and optical properties. The fascinating properties of these systems are often linked to large-scale structural reconstruction of the moiré pattern. Hence, an essential first step in the theoretical study of these systems is the construction and structural relaxation of the atoms in the moiré superlattice. We present the Twister package, a collection of tools that constructs commensurate superlattices for any combination of 2D materials and also helps perform structural relaxations of the moiré superlattice. Twister constructs commensurate moiré superlattices using the coincidence lattice method and provides an interface to perform structural relaxations using classical forcefields.
DOI: 10.17632/zbt9tfpkgv.1
title: MultivariateApart: Generalized partial fractions

description: We present a package to perform partial fraction decompositions of multivariate rational functions. The algorithm allows to systematically avoid spurious denominator factors and is capable of producing unique results also when being applied to terms of a sum separately. The package is designed to work in Mathematica, but also provides interfaces to the Form and Singular computer algebra systems.
DOI: 10.17632/w577r33mxz.1
title: Data for: Evacuation trials from a double-deck electric train unit: Experimental data and sensitivity analysis

description: This dataset contains supplementary material for the article "Evacuation trials from a double-deck electric train unit: Experimental data and sensitivity analysis" accepted to Safety Science on September 24, 2021 (https://doi.org/10.1016/j.ssci.2021.105523).
The paper describes a dataset obtained in a full-scale controlled experiment emulating the emergency evacuation of a double-deck electric unit railcar carried out in Prague in 2018. 15 evacuation trials involving 91 participants were conducted under various evacuation scenarios considering different compositions of passenger crowd, exit widths, and exit types (e.g. egress to a high platform, to an open rail line using stairs, and a 750 mm jump without any supporting equipment). The evacuation trials were conducted to cover all possible combinations of investigated boundary conditions (5 different widths of the main exit and 3 different types of exit for two different passenger groups, HOM and HET), defining altogether 30 different evacuation scenarios. Individual evacuation times for passengers in the trials are provided in the folder "Evacuation_times-raw".
The paper aims to discuss and analyse the influence of boundary conditions on total evacuation time; therefore, the data must have been cleared from several undesirable effects. This is particularly important because there was only one trial per each scenario. The correction includes estimation of total evacuation time of 46 passengers for trials where only 42 passengers evacuated, and in two cases subtraction of delay caused by unexpected situations biasing the measurements. The corrected evacuation times are provided in the folder "Evacuation_times-corrected".
Since the experimentally measured data is rather sparse and burdened with undesirable effects, the sensitivity analysis was performed not only for the experimental data, but the conclusions were supported by the sensitivity analysis of results from Pathfinder simulations. Total evacuation times obtained by means of the computer simulations are provided in the folder "Total_evacuation_time".
DOI: 10.17632/26zshm23gb.1
title: Supplemental Material - Increased usage of nonspecific language to describe physicians in two major dermatologic journals 

description: Paper Title: Increased usage of nonspecific language to describe physicians in two major dermatologic journals

Supplemental material includes raw values for the number of references for each term included in the paper. Additionally it includes raw percentages for the proportion of papers that included each term.
DOI: 10.17632/539g5xhw9w.1
title:  Indonesian Journal Pharmaceutical and Herbal Medicine

description: semua artikel yang dipublikasi oleh  Indonesian Journal Pharmaceutical and Herbal Medicine
DOI: 10.17632/khf5cbhh6z.1
title: Novel alignment method for optical 3D gear metrology of spur gears with a plain borehole

description: In 3D optical metrology, novel approaches  to characterise the geometrical quality of gears require a custom gear alignment process to produce reliable results. This study proposes a novel scan alignment method known as subsequent gear alignment (SGA).  It emphasises on the proper alignment of the gear hole and follows the alignment of gears in real-world applications. Therefore, the SGA method increases the usability of the previously developed and published methods. The scanned data were first processed with both the commercial global alignment and SGA methods and then evaluated to obtain standard geometrical parameters. These were compared with those obtained by the tactile method, and the SGA method offered improved results over the global alignment method.
DOI: 10.17632/w9xfz56txv.1
title: MILimbEEG: An EEG Signals Dataset based on Upper and Lower Limb Task During the Execution of Motor and Motorimagery Tasks

description: In this work, an experimental methodology for the acquisition of EEG signals from volunteer subjects was developed. The volunteers are colleagues and research fellows from ESPOL and patients of the Hospital Luis Vernaza for participating as test subjects.
DOI: 10.17632/w359fz96rb.3
title: Longitudinal Data on Implementing Activity-Based Work Environment

description: Using a longitudinal field survey, we collected data on how implementing an activity-based work environment impacts perceived productivity, job satisfaction, and job strain across time [1]. The sample consisted of 100 employees in a government organization implementing an activity-based working environment with each employee surveyed on three time-points—Time 1–Time 3. The sample included all employees affected by the implementation. At each time-point, the response rate was 87%, 75%, and 69%, respectively, resulting in a total of 231 measurements. The sample was approximately 75% female at each time-point. Data collection took place about two months before the activity-based environment was implemented (condition 1), again about four months after implementation (condition 2), and finally, about nine months after implementation (condition 3). The physical work environment in conditions 2 and 3 was exactly the same. The only difference being that employees had spent more time in the new work environment in condition 3.
DOI: 10.17632/6krfj675cs.3
title: Analysis of parasitic motion with the constraint embedded Jacobian for a 3-PRS parallel manipulator

description: This study derives the equation of parasitic motion of 3-DoFs parallel manipulator from the velocity-level analytic-constraint equation and compares it with a well-known position-level geometric method. The velocity-level constraint is formulated based on the extended Jacobian, derived from the instantaneous motion space (IMS) and the instantaneous restriction space (IRS) for free motion and constraint. In contrast, the position-level constraint, adopted in previous studies, is geometrically obtained by analyzing the moving platform and limb motions. The velocity-level analytic-constraint matrix is used to further analyze the task-space motion. In this paper, the procedure of detecting and identifying the parasitic terms from the independent terms is introduced utilizing the property that comes from the virtue of analytic constraint and inverse rate kinematics algorithm. Then, an equation for the constraint-compatible task motion and a coupling relation between the parasitic and independent motions are derived during further analysis. The paper derived the parasitic motion from position constraint, and an algebraic equivalency with the velocity constraint is shown by taking the time derivative of a point-plane position level constraint for comparison. Finally, numerical simulations are provided to validate the proposed approach and demonstrate the effect of the constraints on the given input velocity within the entire rotational workspace.
DOI: 10.17632/zwwrzptd36.4
title: Violence and Newborn Health. Data update

description: This contains violence data update.
DOI: 10.17632/g8byrmhp4s.1
title: StressVariations_within_FaultDamageZone

description: Calculate variations of stress and effective properties in fractured rock mass representative of fault damage zone.
DOI: 10.17632/bxhmvjmck7.1
title: A proof-of-concept study utilising 2D NMR Spectrometry for in situ characterisation and quantitation of key biomarkers and actives in tape stripped ex vivo human skin data

description: Data sets for Tape Strip paper
DOI: 10.17632/335br4c2xb.1
title: SARS‑CoV‑2 complete genome sequencing from the Italian Campania region using a highly automated next generation sequencing system

description: https://pubmed.ncbi.nlm.nih.gov/34090468/

DOI: 10.1186/s12967-021-02912-4 



Background: Since the first complete genome sequencing of SARS-CoV-2 in December 2019, more than 550,000 genomes have been submitted into the GISAID database. Sequencing of the SARS-CoV-2 genome might allow identification of variants with increased contagiousness, different clinical patterns and/or different response to vaccines. A highly automated next generation sequencing (NGS)-based method might facilitate an active genomic surveillance of the virus.

Methods: RNA was extracted from 27 nasopharyngeal swabs obtained from citizens of the Italian Campania region in March-April 2020 who tested positive for SARS-CoV-2. Following viral RNA quantification, sequencing was performed using the Ion AmpliSeq SARS-CoV-2 Research Panel on the Genexus Integrated Sequencer, an automated technology for library preparation and sequencing. The SARS-CoV-2 complete genomes were built using the pipeline SARS-CoV-2 RECoVERY (REconstruction of COronaVirus gEnomes & Rapid analYsis) and analysed by IQ-TREE software.

Results: The complete genome (100%) of SARS-CoV-2 was successfully obtained for 21/27 samples. In particular, the complete genome was fully sequenced for all 15 samples with high viral titer (> 200 copies/µl), for the two samples with a viral genome copy number < 200 but greater than 20, and for 4/10 samples with a viral load < 20 viral copies. The complete genome sequences classified into the B.1 and B.1.1 SARS-CoV-2 lineages. In comparison to the reference strain Wuhan-Hu-1, 48 total nucleotide variants were observed with 26 non-synonymous substitutions, 18 synonymous and 4 reported in untranslated regions (UTRs). Ten of the 26 non-synonymous variants were observed in ORF1ab, 7 in S, 1 in ORF3a, 2 in M and 6 in N genes.

Conclusions: The Genexus system resulted successful for SARS-CoV-2 complete genome sequencing, also in cases with low viral copies. The use of this highly automated system might facilitate the standardization of SARS-CoV-2 sequencing protocols and make faster the identification of novel variants during the pandemic.
DOI: 10.5281/zenodo.5578645
title: ReplicationPackage-Effects of Variability in Models: A Family of Experiments

description: The replication package consists of raw data, processed data, experimental material, questionnaires, and analysis for the paper "Effects of Variability in Models: A Family of Experiments"
DOI: 10.5281/zenodo.5578644
title: ReplicationPackage-Effects of Variability in Models: A Family of Experiments

description: The replication package consists of raw data, processed data, experimental material, questionnaires, and analysis for the paper "Effects of Variability in Models: A Family of Experiments"
DOI: 10.5281/zenodo.5575564
title: Identyfikacja, implementacja i ewaluacja korekt w metodyce szacowania wymiaru fraktalnego finansowych szeregów czasowych opartej na metodzie wariacyjnej

description: Dane wytworzone w ramach realizacji działania Narodowego Centrum Nauki: <strong>Identyfikacja, implementacja i ewaluacja korekt w metodyce szacowania wymiaru fraktalnego finansowych szeregów czasowych opartej na metodzie wariacyjnej</strong> 2020/04/X/HS4/00051
description: Działanie Narodowego Centrum Nauki (PL): 2020/04/X/HS4/00051 (Miniatura-4)
DOI: 10.5281/zenodo.5575563
title: Identyfikacja, implementacja i ewaluacja korekt w metodyce szacowania wymiaru fraktalnego finansowych szeregów czasowych opartej na metodzie wariacyjnej

description: Dane wytworzone w ramach realizacji działania Narodowego Centrum Nauki: <strong>Identyfikacja, implementacja i ewaluacja korekt w metodyce szacowania wymiaru fraktalnego finansowych szeregów czasowych opartej na metodzie wariacyjnej</strong> 2020/04/X/HS4/00051
description: Działanie Narodowego Centrum Nauki (PL): 2020/04/X/HS4/00051 (Miniatura-4)
DOI: 10.15468/d4fpps
title: Garra hormuzensis, a new species from the upper Kol River drainage in the Persian Gulf basin (Teleostei: Cyprinidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zamani-Faradonbe, Mazaher, Zhang, E., Keivany, Yazdan (2021): Garra hormuzensis, a new species from the upper Kol River drainage in the Persian Gulf basin (Teleostei: Cyprinidae). Zootaxa 5052 (3): 380-394, DOI: https://doi.org/10.11646/zootaxa.5052.3.4
DOI: 10.15468/uwhy47
title: Yunnan-Guizhou Plateau: a mycological hotspot

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wijayawardene, Nalin N., Dissanayake, Lakmali S., Li, Qi-Rui, Dai, Dong-Qi, Xiao, Yuanpin, Wen, Ting-Chi, Karunarathna, Samantha C., Wu, Hai-Xia, Zhang, Huang, Tibpromma, Saowaluck, Kang, Ji-Chuan, Wang, Yong, Shen, Xiang- Chun, Tang, Li-Zhou, Deng, Chun-Ying, Liu, Yanxia, Kang, Yingqian (2021): Yunnan-Guizhou Plateau: a mycological hotspot. Phytotaxa 523 (1): 1-31, DOI: 10.11646/phytotaxa.523.1.1
DOI: 10.5281/zenodo.5578637
title: Emission line models for the lowest mass core-collapse supernovae - I. Case study of a 9 M⊙ one-dimensional neutrino-driven explosion

description: Model spectra of the 9 Msun iron-core model, and the pure H toy model, 200-600d. Distance 10 Mpc assumed.
DOI: 10.5281/zenodo.5578636
title: Emission line models for the lowest mass core-collapse supernovae - I. Case study of a 9 M⊙ one-dimensional neutrino-driven explosion

description: Model spectra of the 9 Msun iron-core model, and the pure H toy model, 200-600d. Distance 10 Mpc assumed.
DOI: 10.5281/zenodo.5578676
title: Encrypted traffic with ESP and TLS

description: Encrypted traffic with ESP and TLS packets
DOI: 10.5281/zenodo.5578675
title: Encrypted traffic with ESP and TLS

description: Encrypted traffic with ESP and TLS packets
DOI: 10.15468/sgj342
title: Tripogon nicorae var. aristulata (Poaceae), a new variety from Peru

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gutiérrez, Harol, Castañeda, Roxana, Gonzales, Teresa, Mendez, Alejandrina Sotelo-, Peterson, Paul M. (2021): Tripogon nicorae var. aristulata (Poaceae), a new variety from Peru. Phytotaxa 523 (1): 110-115, DOI: 10.11646/phytotaxa.523.1.7
DOI: 10.15468/38x8vr
title: A new semifossorial snake of the genus Arrhyton (Squamata: Dipsadidae) from eastern Cuba, with taxonomic comments on other species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Díaz, Luis M., Fong, Ansel, Salas, Diego, Hedges, S. Blair (2021): A new semifossorial snake of the genus Arrhyton (Squamata: Dipsadidae) from eastern Cuba, with taxonomic comments on other species. Zootaxa 5052 (3): 406-418, DOI: https://doi.org/10.11646/zootaxa.5052.3.6
DOI: 10.5281/zenodo.5578662
title: Mainshock+aftershock M4.95+ seismicity forecasts derived from the Regional Earthquake Likelihood Models (RELM) and the multiplicative hybrid earthquake models developed by Rhoades et al. (2014)

description: Contains six mainshock+aftershock seismicity forecasts developed by the Working Group of the Regional Earthquake Likelihood Models (RELM) experiment, sixteen multiplicative hybrid forecasts created by Rhoades et al. (2014), and the 2011-2020 M4.95+ ANSS earthquake catalog for California. Six additional forecast files are included to properly conduct the comparative tests implemented in the Collaboratory for the Study of Earthquake Predictability (CSEP) testing centre. Forecasts are stored in tab separated value files with the following fields (the first row of data is shown as an example): <pre>LON_0 LON_1 LAT_0 LAT_1 DEPTH_0 DEPTH_1 MAG_0 MAG_1 RATE FLAG -125.4 -125.3 40.1 40.2 0.0 30.0 4.95 5.05 5.8499099999999998e-04 1 </pre> Forecast are described in detail by the following publications: Bird, P., and Z. Liu (2007). Seismic Hazard Inferred from Tectonics: California. Seismological Research Letters, 78(1):37-48. Ebel, J. E., D. W. Chambers, A. L. Kafka, and J. A. Baglivo (2007). Non-Poissonian Earthquake Clustering and the Hidden Markov Model as Bases for Earthquake Forecasting in California. Seismological Research Letters, 78(1): 57-65. Helmstetter, A., Y. Y. Kagan, and D. D. Jackson (2007). High-resolution Time-independent Grid-based Forecast for M &gt;= 5 Earthquakes in California. Seismological Research Letters, 78(1): 78-86. Holliday, J., Chen, C., Tiampo, K., Rundle, J., Turcotte, D., and Donnellan, A. (2007). A RELM earthquake forecast based on pattern informatics. Seismological Research Letters, 78(1):87–93. Kagan, Y. Y., D. D. Jackson, and Y. Rong (2007). A Testable Five-Year Forecast of Moderate and Large Earthquakes in Southern California Based on Smoothed Seismicity. Seismological Research Letters, 78(1): 94-98. Rhoades, D.A., Gerstenberger, M.C., Christophersen, A., Zechar, J.D., Schorlemmer, D., Werner, M.J. and Jordan, T.H., 2014. Regional earthquake likelihood models II: Information gains of multiplicative hybrids. Bulletin of the Seismological Society of America, 104(6):3072-3083. Shen, Z.-K., D. D. Jackson, and Y. Y. Kagan (2007). Implications of Geodetic Strain Rate for Future Earthquakes, with a Five-Year Forecast of M5 Earthquakes in Southern California. Seismological Research Letters, 78(1):116-120. Ward, S. (2007). Methods for evaluating earthquake potential and likelihood in and around California. Seismological Research Letters, 78(1):121–133. Wiemer, S. and Schorlemmer, D. (2007). ALM: An asperity-based likelihood model for California. Seismological Research Letters, 78(1):134–140.
DOI: 10.5281/zenodo.5141566
title: Mainshock+aftershock M4.95+ seismicity forecasts derived from the Regional Earthquake Likelihood Models (RELM) and the multiplicative hybrid earthquake models developed by Rhoades et al. (2014)

description: Contains six mainshock+aftershock seismicity forecasts developed by the Working Group of the Regional Earthquake Likelihood Models (RELM) experiment, sixteen multiplicative hybrid forecasts created by Rhoades et al. (2014), and the 2011-2020 M4.95+ ANSS earthquake catalog for California. Six additional forecast files are included to properly conduct the comparative tests implemented in the Collaboratory for the Study of Earthquake Predictability (CSEP) testing centre. Forecasts are stored in tab separated value files with the following fields (the first row of data is shown as an example): <pre>LON_0 LON_1 LAT_0 LAT_1 DEPTH_0 DEPTH_1 MAG_0 MAG_1 RATE FLAG -125.4 -125.3 40.1 40.2 0.0 30.0 4.95 5.05 5.8499099999999998e-04 1 </pre> Forecast are described in detail by the following publications: Bird, P., and Z. Liu (2007). Seismic Hazard Inferred from Tectonics: California. Seismological Research Letters, 78(1):37-48. Ebel, J. E., D. W. Chambers, A. L. Kafka, and J. A. Baglivo (2007). Non-Poissonian Earthquake Clustering and the Hidden Markov Model as Bases for Earthquake Forecasting in California. Seismological Research Letters, 78(1): 57-65. Helmstetter, A., Y. Y. Kagan, and D. D. Jackson (2007). High-resolution Time-independent Grid-based Forecast for M &gt;= 5 Earthquakes in California. Seismological Research Letters, 78(1): 78-86. Holliday, J., Chen, C., Tiampo, K., Rundle, J., Turcotte, D., and Donnellan, A. (2007). A RELM earthquake forecast based on pattern informatics. Seismological Research Letters, 78(1):87–93. Kagan, Y. Y., D. D. Jackson, and Y. Rong (2007). A Testable Five-Year Forecast of Moderate and Large Earthquakes in Southern California Based on Smoothed Seismicity. Seismological Research Letters, 78(1): 94-98. Rhoades, D.A., Gerstenberger, M.C., Christophersen, A., Zechar, J.D., Schorlemmer, D., Werner, M.J. and Jordan, T.H., 2014. Regional earthquake likelihood models II: Information gains of multiplicative hybrids. Bulletin of the Seismological Society of America, 104(6):3072-3083. Shen, Z.-K., D. D. Jackson, and Y. Y. Kagan (2007). Implications of Geodetic Strain Rate for Future Earthquakes, with a Five-Year Forecast of M5 Earthquakes in Southern California. Seismological Research Letters, 78(1):116-120. Ward, S. (2007). Methods for evaluating earthquake potential and likelihood in and around California. Seismological Research Letters, 78(1):121–133. Wiemer, S. and Schorlemmer, D. (2007). ALM: An asperity-based likelihood model for California. Seismological Research Letters, 78(1):134–140.
DOI: 10.5281/zenodo.5578700
title: CHARGEN UDPfrag TCP Syn Multivector DDoS attack

description: CHARGEN, UDPfrag, TCP Syn, Multivector DDoS attack
DOI: 10.5281/zenodo.5578699
title: CHARGEN UDPfrag TCP Syn Multivector DDoS attack

description: CHARGEN, UDPfrag, TCP Syn, Multivector DDoS attack
DOI: 10.5281/zenodo.5578696
title: Reconciling the Infrared Catastrophe and Observations of SN 2011fe

description: W7 at 300 and 1000d, and N100 at 1000d. Distance 10 Mpc assumed.
DOI: 10.5281/zenodo.5578695
title: Reconciling the Infrared Catastrophe and Observations of SN 2011fe

description: W7 at 300 and 1000d, and N100 at 1000d. Distance 10 Mpc assumed.
DOI: 10.34740/kaggle/dsv/2721047
title: COVID Vaccination in World (updated daily)