cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.42338
title: Research data supporting "A background correction method to compensate illumination variation in hyperspectral imaging"

description: The dataset includes experimental and simulation data and the codes used in the paper "A background correction method to compensate illumination variation in hyperspectral imaging". All experimental data is captured using hyperspectral endoscopy (https://www.nature.com/articles/s41467-019-09484-4). See the Readme file for detailed information.
DOI: 10.17863/cam.73788
title: Research data supporting The effect of the dielectric end groups on the positive bias stress stability of N2200 organic field effect transistors

description: Data to accompany "The effect of the dielectric end groups on the positive bias stress stability of N2200 organic field effect transistors" by D. Simatos et al., APL Materials 9, 041113 (2021); https://doi.org/10.1063/5.0044785 also available on Apollo (https://www.repository.cam.ac.uk/handle/1810/319841) and arXiv (https://arxiv.org/abs/2104.07089). The zip folder contains raw datasets (.txt and .csv files) of transfer and output curves as well as of positive bias stress (PBS) of OFETs (Organic Field Effect Transistors) fabricated with the semiconducting organic polymers indacenodithiophene-co-benzothiadiazole (C16-IDTBT) and poly[2,5-bis(3-tetradecylthiophen-2-yl)thieno[3,2-b]thiophene] (C14-PBTTT) as well as Cytop-M (CTL-809M) and Cytop-S (CTX809-SP2) gate dielectrics (AGC Inc.). The analysis (.opju file) was carried out in Origin (the data analysis and graphing software from OriginLab). Dielectric thicknesses measured with a profilometer are also included. See the main manuscript for more details. Folder names include information relating to the batch & date of device fabrication, contact geometry (TGBC - top gate bottom contact), type of polymer (IDTBT, N2200), type of dielectric (Cytop-M, Cytop-S), fabrication and testing conditions (nitrogen atmosphere, air exposure or vacuum) and the number of days elapsed since fabrication. In addition, Cryo denotes measurements as a function of temperature and PBS - Positive Bias Stress results. Filenames include information relating to the fabrication batch, contact geometry (TGBC - top gate bottom contact), type of polymer (IDTBT, N2200), type of dielectric (Cytop-M, Cytop-S), fabrication and testing conditions (nitrogen atmosphere, air exposure and vacuum) as well as the number of days elapsed since fabrication, T- transfer curve, O- output curve. PBS filenames also include the time elapsed from the beginning of an experiment and Cryo filenames include the temperature in Kelvin.
DOI: 10.17863/cam.14330
title: Research data supporting "Diastereoselective synthesis of functionalized indolines using in situ generated allyl boronic species"

description: NMR data and IR data
DOI: 10.17863/cam.41537
title: Research data supporting 'Phase behaviour of empirical potentials of titanium dioxide'

description: The archive includes: - LAMMPS input files for the Matsui-Akaogi and Luan-Huynh-Zhou empirical potentials of TiO2; - CIF structures of all polymorphs studied in the manuscript; - results from free-energy calculations, including the data used in the manuscript's figures, as well as the underlying data used to generate them. The data are described in more detail in the readme file included in the archive.
DOI: 10.17863/cam.23135
title: Research data supporting "Vibrationally Assisted Intersystem Crossing in Benchmark Thermally Activated Delayed Fluorescence Molecules"

description: Raw data for manuscript titled 'Vibrationally-assisted intersystem crossing in benchmark thermally activated delayed fluorescence molecules.' Data includes absorption and photoluminescence spectra for 2CzPN and 4CzIPN (Fig1b_Abs_2CzPN, Fig1b_Abs_4CzIPN, Fig1b_PL_2CzPN, Fig1b_PL_4CzIPN); transient electron spin resonance spectra for 2CzPN and 4CzIPN (Fig2c_2CzPN_0p4us, Fig2d_4CzIPN_0p4us); probability distributions for zero-field splitting in 2CzPN and 4CzIPN (Fig3a_2CzPN_ZFS_probability_distribution, Fig3b_4CzIPN_ZFS_probability_distribution); plots of zero-field splitting as a function of overlap index in 2CzPN and 4CzIPN (Fig3c_2CzPN_ZFS_overlap_idx, Fig3d_4CzIPN_ZFS_overlap_idx); and density plots (field versus time) of transient electron spin resonance spectra of 2CzPN and 4CzIPN (FigS1_TrESR_2CzPN_420nm_exc, FigS1_TrESR_4CzIPN_460nm_exc).
DOI: 10.17863/cam.113772
title: Research data supporting "Role of Radicals in the Reaction of Oxygen Difluoride with Monohydrogenated Silicon"

description: The dataset contains 44 molecular dynamic trajectories for the interaction of oxygen difluoride with a monohydrogenated silicon surface, computed using the CASTEP computer code. Output is provided in the form of *.md and *.castep files produced by the code. The former contains position, velocity, and force data, which may be visualised using commonly available software, such as the Jmol code. The latter contains human-readable data concerning electronic spin during each trajectory, together with sufficient information about computational parameters to enable replication of the calculations.
DOI: 10.57702/h9yhn5p8
title: Implied Volatility Realized Volatility Systemic Risk Indicator

description: Systemic risk indicator based on implied and realized volatility measures
DOI: 10.17863/cam.102182
title: Data supporting "Maintaining understory vegetation in oil palm plantations supports higher assassin bug numbers"

description: Dataset includes - site information, assassin bug counts and rainfall measurements. Research Project Data relates to a study that tested the effect of three alternative herbicide spraying regimes and associated vegetation complexity treatments on numbers of two species of assassin bugs (Cosmolestes picticeps and Sycanus dichotomus). The treatments encompassed a range of understory vegetation management practices used in oil palm plantations and include removing vegetation only in areas key to harvesting (“Normal”), removing all understory vegetation (“Reduced”), and allowing native vegetation to regrow naturally (“Enhanced”). Both the long-term (18 months) and short-term (within 2 weeks) effects of treatments were assessed following herbicide spraying. Study Site Data was collected in industrial oil palm plantations in Riau Province, Sumatra, Indonesia (N0 55.559, E101 11.619). The region has a wet tropical climate, with an average annual rainfall of 2,350 mm. Data was collected across two neighbouring plantation estates (Ujung Tanjung and Kandista). These estates were planted between 1988 and 1993, meaning oil palms were mature (aged 20 – 27 years) at the time of data collection in 2013, 2014 & 2015. Across the two estates, oil palms were planted in staggered rows at a density of 136 palms/ha, or approximately 8 m apart. Project sites consisted of eighteen plots, arranged into six triplets. Each plot measured 150 × 150 m and was made up of a central 50 × 50 m core section and an outer buffer region. The three plots within each of the six triplets were randomly allocated to one of three understory treatments. Collection Methods Adult assassin bugs (Reduviidae) of the species Cosmolestes picticeps and Sycanus dichotomus were surveyed along transects in the core of each study plot. Transect walks consisted of a recorder walking at a steady pace, counting any adult C. picticeps or S. dichotomus that were visible or flew up in front of the recorder (without deliberately disturbing vegetation) within a 5-m-sided cube of space in front of them. The transect was 200 m in length and followed the edge of the central 50 x 50 m core section within each plot. Transects were walked between 9:00 and 17:00 and were not conducted when it was raining.
DOI: 10.6084/m9.figshare.28030940.v1
title: <b>Choline mediates deoxycholic acid to relieve colitis via the gut-liver axis</b>

description: In the first experiment, 16 multiparous Hu-sheep of similar body weight at 108 days of gestation were selected and fed ad libitum for 7 days to determine their feed intake. They were then randomly divided into a control (CON) group (ad libitum feeding) and a severe undernutrition (SUN) group (30% of ad libitum feed intake) for 15 days.In the second experiment, 16 multiparous Hu-sheep of similar body weight at 108 days of gestation were also selected and fed ad libitum for 7 days to determine their feed intake. They were then randomly divided into an undernutrition (UN) group (50% of free-feeding amount) and a rumen-protected choline (RPC) group (50% of free-feeding amount + 15 g/d rumen-protected choline (20% choline)), for 9 days.
DOI: 10.15468/dl.jveg72
title: Occurrence Download

description: A dataset containing 11406 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moringa oleifera Lam."
 ]
}

 The dataset includes 11406 records from 352 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037650-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.23496
title: Research data supporting “Towards Cellular Sieving: Exploring the Limits of Scaffold Accessibility for Cell Type Specific Invasion” (Version 2)

description: Zip folder containing sample reconstructed Micro-CT scans (.tif files) from each scaffold condition. Image pixel size is 3.1 μm. Each image plane is perpendicular to the direction of cell invasion (i.e. parallel to the seeding plane). Two Microsoft Excel files, containing the raw measurements of pore size and of L and d (as defined in the manuscript) for calculation of percolation diameter. Units are in pixels unless specified. Zip folder containing raw images (.png files) of each scaffold section, in bright field and in the green fluorescence channel showing actin staining. NB: Individual images are labelled according to a lab-based numbering scheme and do not match the sample nomenclature used in the manuscript. Microsoft Excel files for each cell type and time point showing the calculations of median cell position obtained from the images supplied, following the procedure outlined in the manuscript. The values of median cell position shown in black typeface were averaged to give the mean of six measurements. For each condition, these six measurements were chosen from replicates containing consistency in collagen pore wall orientation, while ensuring it was kept above OI = 0.9 (indicating high collagen orientation in the direction of cell invasion). See the main manuscript for more details.
DOI: 10.6084/m9.figshare.5194936.v1
title: China multi-regional input-output (MRIO) table 2012.xlsx

description: We
utilised the latest socioeconomic datasets to compile China MRIO table for 2012
based on the modified gravity model. The MRIO table provides economic flows among
China’s 30 regions with 30 economic sectors in each region. For more information, please contact with z.mi@ucl.ac.uk (Z. Mi).
DOI: 10.17863/cam.6492
title: Research data supporting "Influence of building geometry on bending and shear deformations of buildings subject to tunnelling subsidence: numerical modelling"

description: Data supporting the publication "Influence of building geometry on bending and shear deformations of buildings subject to tunnelling subsidence: numerical modelling"
DOI: 10.17863/cam.72481
title: Research data supporting "Polysaccharide metabolism regulates structural colour in bacterial colonies"

description: This data supports the publication "Polysaccharide metabolism regulates structural colour in bacterial colonies". It contains folders containing the raw data used to obtain each of the figures in the pages. It contains goniometer data and corresponding Python scripts to process the goniometer data, cryo-TEM images used for size analysis of the cells, light micrographs and Python scripts used for obtaining the power spectral density function, genomic sequencing data for the mutant strains, and photographs of IR1 colonies grown on different media for analysis of the colony diameter over time. Each folder contains a ReadMe file that further explains the contents of the data in that folder.
DOI: 10.17863/cam.35681
title: Agda code accompanying PhD thesis: Cubical Models of Homotopy Type Theory -- An Internal Approach

description: Agda development covering many of the proofs in my PhD thesis. Many of these proofs were produced by me over the course of my PhD, although some are the result of collaboration with Andrew Pitts, Daniel Licata and Bas Spitters. All the files are contained inside a single .zip file and include a README file which is reproduced below: Agda code accompanying PhD thesis: Cubical Models of Homotopy Type Theory -- An Internal Approach" by Ian Orton. This dataset was finalised in November 2018 by Ian Orton, who was a PhD student at the University of Cambridge the time. He may be contacted at ianorton@hotmail.com. This dataset consists of numerous computerised proofs which can be checked with the proof assistant Agda. The file `root.agda` describes how these proofs are structured and what is contained in each file. The structure of the files is designed to match the structure of the PhD thesis. These files were put together by Ian Orton, but build on work done in collaboration with Andrew Pitts, Daniel Licata and Bas Spitters. The files which are imported by `chapter7.agda` require an (at the time of writing) experimental branch of Agda known as Agda-flat which can be installed using the following commands: git clone https://github.com/agda/agda cd agda git checkout flat cabal update cabal install --program-suffix=-flat The file `root.agda` has been checked using the following versions of Agda, with the approximate times taken to check the entire file: - Agda 2.5.4 (with chapter7 commented out) in ~ 1 min - Agda-flat 2.6.0-1f943c9 (the whole file) in ~ 3 mins This data is released under the CC BY licence and everyone is free to use, share and modify it.
DOI: 10.17863/cam.9335
title: Research data supporting On the Accuracy of One and Two Particle Solvation Entropies

description: This is the data associated with the publication "On the Accuracy of One and Two Particle Solvation Entropies" by B.W.J Irwin and D.J. Huggins. It contains: 1) The input files for the NAMD code used to run the simulations mentioned in the work. 2) The data files used to make plots shown in the paper. 3) A spreadsheet used to keep track of calculations made for the paper. 4) C codes for entropy calculations 5) Perl codes for running MD simulations in NAMD
DOI: 10.17863/cam.8538
title: Supporting code for "What not detectors help the brain see in depth"

description: This entry contains code to optimize convolutional neural networks for a disparity discrimination task. It also provides code to instantiate a Binocular Likelhood Model as proposed in Goncalves and Welchman, Current Biology, 2017
DOI: 10.60797/irj.2024.150.14.1
title: Классификация причин факторов, способствующих развитию буллинга среди современных подростков

description: Международный научно-исследовательский журнал, Выпуск 12 (150) 2024
DOI: 10.17863/cam.84715
title: Research data supporting "Competition between the superconducting spin-valve effect and quasiparticle spin-decay in superconducting spin-valves"

description: Raw measurement R(H) and R(T) data, plus a single M(H) file, and a .csv file with some addition information about each device, for the devices in this publication. See README file for more information.
DOI: 10.60797/irj.2024.150.14.2
title: Описание этапов социально-педагогической профилактики буллинга в подростковой среде

description: Международный научно-исследовательский журнал, Выпуск 12 (150) 2024
DOI: 10.17863/cam.32922
title: Raw Data supporting article "Photoreduction of CO2 with a formate dehydrogenase driven by photosystem II using a semi-artificial Z-scheme architecture"

description: Raw data and corresponding data analysis (Microsoft Office Excel, Origin) supporting Journal of American Chemical Society publication: "Photoreduction of CO2 with a formate dehydrogenase driven by photosystem II using a semi-artificial Z-scheme architecture". Data include: three-electrode and two-electrode electrochemistry and photoelectrochemistry, data analysis and product quantification.
DOI: 10.6084/m9.figshare.4970699.v2
title: Taxonomy table

description: taxonomy table used for this project<br>
DOI: 10.17863/cam.48966
title: Genizah Bibliography 2019

description: Genizah Bibliography 2019
DOI: 10.25574/62693
title: Chandra X-ray Observatory ObsId 62693
DOI: 10.17863/cam.24907
title: Performance Improvements in Conjugated Polymer

description: Data on the stability of conjugated polymer OFETs. The data set contains all the data presented in the paper (Figures 1 through 4) and consists of transistor transfer and output characteristics as well as the extracted field-effect mobility for some devices (For others it can directly be extraxted from the containing raw data) and photothermal absorption spectroscopy (PDS) data.
DOI: 10.17863/cam.13199
title: Research data supporting "Target identification of Mycobacterium tuberculosis phenotypic hits using a concerted chemogenomic, biophysical and structural approach"

description: Anti-microbial Drug Discovery project with usage of experimental and in-silico methods focused on Mycobacterium tuberculosis.
DOI: 10.5281/zenodo.14215087
title: Dataset published in the article: "Electrospun poly(L-lactide-co-DL-lactide) nanofibrous scaffold as substrate for ex vivo limbal epithelial cell cultivation"
DOI: 10.5281/zenodo.14215088
title: Dataset published in the article: "Electrospun poly(L-lactide-co-DL-lactide) nanofibrous scaffold as substrate for ex vivo limbal epithelial cell cultivation"
DOI: 10.17863/cam.13136
title: Research data supporting "Rapid, selective and stable HaloTag-LbADH immobilization directly from crude cell extract for the continuous biocatalytic production of chiral alcohols and epoxides"

description: A strategy for biocatalyst immobilization in flow directly from the crude cell extract is described. The efficiency and the stability of the immobilized enzyme were demonstrated during the asymmetric reduction of a range of ketones. The cascade two-step chemo-enzymatic preparation of chiral epoxides was possible through the initial ketone bioreduction to an intermediate halohydrin followed by its intramolecular cyclization.
DOI: 10.17863/cam.22369
title: Code supporting Internal Universes in Models of Homotopy Type Theory

description: Agda code accompanying the paper "Internal Universes in Models of Homotopy Type Theory" by Dan R. Licata, Ian Orton, Andrew M. Pitts and Bas Spitters, in Proceedings of the 3rd International Conference on Formal Structures for Computation and Deduction (FSCD 2018), Leibniz International Proceedings in Informatics (LIPIcs), Vol. 108, pp. 22:1-28:, 2018.
DOI: 10.6084/m9.figshare.21253323
title: Dataset_Mayotte_WellconstrainedVolcanoTectonic_201903_202103

description: Since 2018, an unexpected number of earthquakes have been occurring offshore Mayotte, in the Mozambique Channel. They are linked to the eruption of the Fani Maoré submarine volcano, 50 km offshore the island. Using a recently developed comprehensive automatic catalog, we created a database of the two years of volcano-tectonic seismicity between March 2019 and March 2021, selecting only the well-constrained events depending on locations errors. With this dataset, we analyzed in detail the active structures of the magmatic plumbing system and the temporal evolution of the seismicity during the eruption.
DOI: 10.6084/m9.figshare.21253323.v1
title: Dataset_Mayotte_WellconstrainedVolcanoTectonic_201903_202103

description: Since 2018, an unexpected number of earthquakes have been occurring offshore Mayotte, in the Mozambique Channel. They are linked to the eruption of the Fani Maoré submarine volcano, 50 km offshore the island. Using a recently developed comprehensive automatic catalog, we created a database of the two years of volcano-tectonic seismicity between March 2019 and March 2021, selecting only the well-constrained events depending on locations errors. With this dataset, we analyzed in detail the active structures of the magmatic plumbing system and the temporal evolution of the seismicity during the eruption.
DOI: 10.17863/cam.89740
title: Research data supporting “A Systematic Method for Enhanced Expression of Alcohol Dehydrogenases in Escherichia coli" (PhD thesis)

description: The supplemental file contains a list of publications used to conduct a systematic literature review for the thesis titled “A Systematic Method for Enhanced Expression of Alcohol Dehydrogenases in Escherichia coli”. Publications for this review were sourced from NCBI PubMed and WoS databases, in addition to Google Scholar. Relevant articles published between 1 January 2010 and 13 April 2022 were selected. Search terms included those for Escherichia coli (including the terms ‘Escherichia coli’ and ‘E. coli’), ‘recombinant’, ‘enzyme’, and ‘inclusion bodies’, generated a total of 791 results in PubMed, 232 results in WoS and 40.1 K search results in Google Scholar. These papers were manually curated within the search results for PubMed and WoS. Logical operators were used to remove irrelevant search results from the large number of results returned in Google Scholar specifically leaving 780 results. The literature search for this review was limited to those studies that explicitly reported: (i) the native prokaryotic source of the enzyme of interest, (ii) gene sequence and/or identifier, (iii) the E. coli expression strain, (iv) the expression vector backbone, and (v) expression conditions (i.e. expression temperature, inducer concentration, cell density). In total 139 publications that expressed 146 enzymes were selected between 2010 and 2022; some publications highlighted multiple enzymes leading to a higher number of enzymes compared to publications.
DOI: 10.17863/cam.42985
title: Research data supporting "Fast Ionic Conductivity in the Most Lithium-Rich Phosphidosilicate Li14SiP6"

description: This dataset contains additional computational data associated with the publication by Strangmüller, Eickhoff et al. (10.1021/jacs.9b05301). Structural data are provided in XYZ format for (i) the initial, discrete structural model and (ii) the molecular-dynamics trajectory at around 1,023 K.
DOI: 10.17863/cam.13084
title: Research data supporting "Strong-coupling of WSe2 in ultra-compact plasmonic nanocavities at room temperature"

description: The Data was collected using costume build dark-field scattering microscopes and Photo emission setups.
DOI: 10.17863/cam.47016
title: Data for Microsecond Carrier Lifetimes, Controlled p-Doping, and Enhanced Air Stability in Low-Bandgap Metal Halide Perovskites

description: All measurements are on low bandgap formamidinium lead-tin iodide metal halide perovskite films (FASn0.5Pb0.5I3) with a small quantity of zinc iodide added to the precursor solution (where x is the molarity of ZnI2 relative to that of FAI in the precursor). 1. shows photoluminescence quantum efficiency measurements when exciting with a 647nm laser. Time correlated single photon counting measurements (a measure of the photoluminescence lifetime) are in 2., when samples were excited by a 635nm pulsed laser. 3. is the decay of the ground state bleach following photo-excitation, as measured in transient absorption spectroscopy (532nm excitation). This data was calibrated to quantity the excitation density within the film as a function of time following photoexcitiation. 4. is the response of perovskite films when fabricated on a bottom gate/bottom contact transistor device, when in the dark and under different levels of white light illumination. 5. shows standard solar cell characterisation for thin absorber layers incorporated into a full solar cell stack. 6. is the percentage change in lattice parameter found from X-ray diffraction measurements of the different films. 7. is the cross section chemical distribution, as measured in scanning transmission electron microscopy energy-dispersive X-ray (STEM-EDX) spectroscopy.