cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21963/12101
title: Milne Fiord Oceanographic Mooring, 2011-2019

description: A series of temperature, conductivity-temperature and conductivity-temperature-depth loggers were placed on a rope suspended from the ~1-2 m thick perennial ice surface. The lower end of the rope was weighted down. Each logger was set to record continuously (at various intervals). Temperature loggers were Onset hobo temperature loggers, and RBR TR1050s, TR1060s and SoloTs. Note, Hobo temperature loggers were placed in the ice and on a vertical stake and measured air, snow or ice temperatures. CT/CTDs were Seabird SBE37, XT-420, XR-620. Instrument number and placement varied through time 15 to 27. Each year the mooring is retrieved. Each instrument program is then downloaded, batteries and desiccant are changed, time is synced and a new program is uploaded. At the top of the mooring, there is a cross of 2x4s that attaches to a 3 m PVC stake and 3 floats. That way, the mooring can be found and recovered if the ice breaks up (although this has not occurred yet). Visits to the mooring include: May 2011 (setup), May 2012, July 2012, May 2013, July 2013, July 2014, July 2015, July 2016 July 2017, July 2018 and July 2019.
description: To determine the heat and salt budget of Milne Fiord along with changes in the depth of the epishelf lake which exists within the upper water column and deep water renewal events, a mooring was installed in the centre of Milne Fiord. This mooring has been maintained since May 2011 with only a few days of down time due to maintenance. A collection of temperature and conductivity data logged continuously from several depths in Milne Fiord. These data show how the fresh upper water column (also known as an epishelf lake) and the underlying sea water (to a depth of ~350 m) have changed over time in this Arctic fiord.
DOI: 10.25318/1410006001-eng
title:  Retirement age by class of worker, annual

description: Retirement age by class of worker and sex, last 5 years.
DOI: 10.3886/icpsr01132.v1
title: Solution to the Ecological Inference Problem: Reconstructing Individual Behavior from Aggregate Data
title: Version 1

description: These data make it possible to replicate all numerical results in Gary King (1997), A SOLUTION TO THE ECOLOGICAL INFERENCE PROBLEM: RECONSTRUCTING INDIVIDUAL BEHAVIOR FROM AGGREGATE DATA. Princeton, NJ: Princeton University Press.
description: Datasets: 
 
 DS1: Dataset
description: (1) The data file is eirepl.zip, a binary-format zip file. The README.now file contains documentation and an explanation for the other files provided. (2) These data are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the investigator(s) if further information is desired.
DOI: 10.5067/60hb8vip2t8w
title: SMAP L4 Global 3-hourly 9 km EASE-Grid Surface and Root Zone Soil Moisture Analysis Update, Version 4
DOI: 10.5067/wpxuq72a4484
title: Daily Global Land Parameters Derived from AMSR-E and AMSR2, Version 3
DOI: 10.5281/zenodo.10890104
title: Sodium enrichment of Mercury's subsurface through diffusion

description: The data contains the temporal evolution of the sodium density in Mercury's subsurface. The four files correspond to the the sodium density evolution at the cold and hot longitudes, and for two different surface binding energy distributions.

Description of the data and file structure

Each file is structured as follow :

Line 1 : Thickness of each layer of regolith starting from the surface

Line 2 : Porosity of each layer starting from the surface

Each following 5 lines correspond to the evolution over 3000 seconds with :

Line 3 + (5 n) : Time

Line 4 + (5 n) : Mean surface binding energy

Line 5 + (5 n) : Density of adsorbates per layer starting from the surface

Line 6 + (5 n) : Density of gaseous sodium per layer starting from the surface

Line 7 + (5 n) : Density of sodium (adsorbate and gas) per layer starting from the surface

The figures in the letter use only the density of adsorbates

Sharing/Access information

The data and the software can also be asked directly to the author of the letter.

Code/Software

The software is detailed in the letter.
DOI: 10.5281/zenodo.11111470
title: Radiation Belt Forecast Model and Framework (RBFMF) 10 Hour Hindcast Validation Data

description: Archived data for the manuscript “On the Performance of a Real-Time Electron Radiation Belt Specification Model”  Staples et al., submitted to Space Weather, 2024.

 

Data in these files specify the radiation belt through phase space density (PSD) in adiabatic coordinate system. Simulated PSD is from the Radiation Belt Forecast Model and Framework (RBFMF) 10 hour hindcast, and measured PSD is from an intercalibrated multi-mission observatory (Van Allen Probes, GOES 13, 15, GPS, MMS, and THEMIS). For detailed description of the method used in the computation of this data, see sections 2 and 3 of the submitted manuscript.

 

The THEMIS, Van Allen Probe, MMS, and GOES data used in computations is publicly available via http://cdaweb.gsfc.nasa.gov 

The GPS data is available via https://www.ngdc.noaa.gov/stp/space-weather/satellite-data/satellite-systems/gps/

 

Data Preperation: 

Adam Kellerman, akellerman@atmos.ucla.edu 

Frances Staples, frances.staples@atmos.ucla.edu

 

Support for this work was provided by NASA grants 80NSSC20K1402 and 80NSSC23K0096, and NSF grant 2149782.

 

'PSD_10hrHC_Jan2016-Oct2018.mat'

Matlab data file format.

Data time period: January 2016 - October 2018. 

            Variable Descriptions:

time - Serial date.

InvMu - 1st adiabatic invariant coordinate, mu.

InvK - 2nd adiabatic invariant coordinate, k.

lstar - 3rd adiabatic invariant coordinate, l*.

psd_sim - 10 hour radiaiton belt hindcast. Simulated PSD has dimensions corresponding to (time,lstar,mu,k).  

psd_obs - PSD observed by multi-mission dataset, with dimensions matching the simulated PSD (time, lstar, mu, k).  

 

'PSD_10hrHC_Mar2019-Dec2020.mat'

Matlab data file format.

Data time period March 2019 - December 2020. 



Variable Descriptions:


time - Serial date.

InvMu - 1st adiabatic invariant coordinate, mu.

InvK - 2nd adiabatic invariant coordinate, k.

lstar - 3rd adiabatic invariant coordinate, l*.

psd_sim - 10 hour radiaiton belt hindcast. Simulated PSD has dimensions corresponding to (time,lstar,mu,k).  

psd_gps - PSD observed by the GPS constellation, with dimensions matching the simulated PSD (time, lstar, mu, k). 

 

'RBSP_beacondata_Jan2016-Oct2018.mat'

Matlab data file format.

Data time period January 2016 - October 2018. 

Variable Descriptions:

time - Serial date.

InvMu - 1st adiabatic invariant coordinate, mu.

InvK - 2nd adiabatic invariant coordinate, k.

lstar - 3rd adiabatic invariant coordinate, l*. l* dimensions correpond to the dimensions of the 2nd invariant, K (time, K)

psd - real time PSD observed from Van Allen Probe b (beacon data), with dimensions corresponding to (time,mu,k). 

psd_err - observed error of beacon PSD data (i.e. Beacon_PSD - FinalRBSP_PSD).

psd_q - observed quotient of beacon PSD data (i.e., Beacon_PSD/FinalRBSP_PSD).

 

'README.txt'

Downloadable file descriptions.
DOI: 10.5281/zenodo.12736546
title: Continuum Normalized MARCS synthetic spectra (DR16)

description: Continuum Normalized MARCS synthetic spectra (DR16 MARCS) following the procedure described in Appendix A1 of the research article tonalli: an asexual genetic code to characterize APOGEE-2 stellar spectra. I. Validation with synthetic and solar spectra.
DOI: 10.5281/zenodo.13358788
title: Supplementary material for "The Multi-Segment Complexity of the 2024 Mw 7.5 Noto Peninsula Earthquake Governs Tsunami Generation"

description: This repository contains the supplementary files for the GRL submission "The Multi-Segment Complexity of the 2024 Mw 7.5 Noto Peninsula Earthquake Governs Tsunami Generation" by Fabian Kutschera, Zhe Jia, Bar Oryan, Jeremy Wing Ching Wong, Wenyuan Fan, and Alice-Agnes Gabriel.

The repository is subdivided into 5 folders:



multi-cmt:



contains subevent and subfault information of the preferred multi-CMT model 

contains the multi-CMT solution for the adapted scaling relation model 

all 2000 multi-CMT solutions



displacement:



contains the python script to compute the elastic dislocation based on Okada (1992) using the python implementation okada4py (https://github.com/jolivetr/okada4py)

contains the calculated displacements of models presented in the paper (readily available in *.tt3 format for GeoClaw, see tsunami folder)

contains the synthetic GNSS files for each model

all 2000 displacement models constructed from the 2000 multi-CMT solutions



tsunami:



input files necessary to run GeoClaw 

output of the synthetic tide gauges for the various tsunami simulations



misc:



additional files for aftershocks and observed GNSS data



movies:



supplementary movies S1 and S2 from the submission
DOI: 10.5281/zenodo.13885017
title: Length of day residuals after the removal of tidal friction, glacial isostatic adjustment, and climatic effects: 720 BC to 2020

description: LOD residuals after the removal of tidal friction, glacial isostatic adjustment, and climatic effects.Time range 720 BC to 2020 AD.Data are with respect to 2020.First column: time in year (negative years mean BC)Second column: LOD residuals in millisecondsThird column: uncertainty of the LOD residuals in milliseconds

If you use the data, please cite the following references:1. The increasingly dominant role of climate change on length of day variations: Kiani Shahvandi et al. 2024 published in PNAS, https://doi.org/10.1073/pnas.24069301212. Length of day variations explained in a Bayesian framework: Kiani Shahvandi et al. 2024 published in GRL3. Addendum 2020 to ‘Measurement of the Earth’s rotation: 720 BC to AD 2015’: Morrison et al. 2021 published in Proceedings of the Royal Society A, https://doi.org/10.1098/rspa.2020.0776
DOI: 10.5281/zenodo.13901433
title: Data of contents amino sugars and microbial necromass carbon in plant roots and the environmental variables

description: Data display the results of environmental properties of 19 sampling sites, amino sugars and microbial necromass carbon (MNC) in the fresh roots of 27 dominant species and mixed roots (including dead roots) of mixed species in Inner Mongolian grasslands, AMF biomass and colonization rate in the fresh roots of 27 dominant species, contents of biomarkers (amino sugars and plant-derived lipids) and organic carbon during the decomposition experiment in model soils, and the relationships between environmental properties and root-borne MNC and their contribution to soil organic carbon.
DOI: 10.5281/zenodo.13930080
title: Snow CCI and Landsat reanalysis outputs

description: The Snow CCI and Landsat reanalysis dataset contains prior and posterior results of snow water equivalent (SWE) and fractional snow cover area (SCA). The data is stored in the netCDF format (*.nc files), which is a self-describing data format that can be loaded by many software packages. The data has a spatial resolution of 1 km. It starts from WY 2001 (Oct 1st, 2001) to WY 2019 (Sept. 30th, 2019). The output files store daily maps of SWE and SCA within a 1 degree x 1 degree tile for a given WY. The ensemble median, ensemble mean, standard deviation, and interquartile range of outputs are provided in the dataset.
DOI: 10.5285/3c324bb4ee394d0d876fe2e1db217378
title: ESA Lakes Climate Change Initiative (Lakes_cci): Lake products, Version 1.0

description: This dataset contains various global lake products (1992-2019) produced by the European Space Agency (ESA) Lakes Climate Change Initiative (Lakes_cci) project. Lakes are of significant interest to the scientific community, local to national governments, industries and the wider public. A range of scientific disciplines including hydrology, limnology, climatology, biogeochemistry and geodesy are interested in distribution and functioning of the millions of lakes (from small ponds to inland seas), from the local to the global scale. Remote sensing provides an opportunity to extend the spatio-temporal scale of lake observation. The five thematic climate variables included in this dataset are: • Lake Water Level (LWL): a proxy fundamental to understand the balance between water inputs and water loss and their connection with regional and global climate changes. • Lake Water Extent (LWE): a proxy for change in glacial regions (lake expansion) and drought in many arid environments, water extent relates to local climate for the cooling effect that water bodies provide. • Lake Surface Water temperature (LSWT): correlated with regional air temperatures and a proxy for mixing regimes, driving biogeochemical cycling and seasonality. • Lake Ice Cover (LIC): freeze-up in autumn and advancing break-up in spring are proxies for gradually changing climate patterns and seasonality. • Lake Water-Leaving Reflectance (LWLR): a direct indicator of biogeochemical processes and habitats in the visible part of the water column (e.g. seasonal phytoplankton biomass fluctuations), and an indicator of the frequency of extreme events (peak terrestrial run-off, changing mixing conditions). Data generated in the Lakes_cci project are derived from data from multiple instruments and multiple satellites including; TOPEX/Poseidon, Jason, ENVISAT, SARAL, Sentinel, Landsat, ERS, Terra/Aqua, Suomi NPP, Metop and Orbview. For more information please see the product user guide in the documents.
DOI: 10.5519/0028204
title: Historical UK cetacean strandings dataset (1913-1989)

description: Over 100 years ago, the Natural History Museum created a project to document the cetaceans (whales, dolphins and porpoises) stranded on British beaches. Annual reports were submitted to the UK Government from 1913, and in the introduction to the first report, the founder Sir Sidney F. Harmer wrote, “The instruction to the Receivers of Wrecks, issued by the Board of Trade in 1912, at the request of the Trustees of the British Museum to send telegraphic Reports of the strandings of specimens of Whales to the Museum has resulted in the collection of a number of records of British Cetacea.” The Museum continues to be part of efforts to record stranded cetaceans to this day as one of the partners of the Cetacean Strandings Investigation Programme (CSIP). This dataset is the historical portion of these records and covers the period from 1913 to 1989. In 1990 the CSIP partnership was created, so please contact them for data from 1990 (http://ukstrandings.org/). The data have been cleaned as follows. * Grid references were converted to latitude and longitude * Taxonomy for scientific names was corrected to that of Reid et al 2003 (Atlas of Cetacean distribution in north-west European waters). * Dates were standardised to YYYY-MM-DD format * Typos were corrected *Grid references were converted by Louise Allan. All other modifications were carried out by Ellen J Coombs under the guidance of Richard C Sabin and Natalie Cooper.* Further information on cetacean strandings and the NHM are available here: * http://ukstrandings.org/ * https://naturalhistorymuseum.blog/2018/03/02/a-beach-walkers-guide-to-identification-of-whales-dolphins-porpoises-cetacean-strandings-investigation-programme/ * http://www.nhm.ac.uk/discover/investigating-whale-strandings.html We thank the members of the public and HM Coastguards who took the time to report strandings to us over the last 100 years (originally by filling out postcards!). We also thank the numerous UK conservation organisations and their dedicated volunteers. Without their efforts this dataset would not exist.
DOI: 10.6084/m9.figshare.25303924
title: Ancient Tsunami Records in the Viscous Remanent Magnetization of Reworked Boulders in the Kingdom of Tonga

description: Data collection for "Ancient Tsunami Records in the Viscous Remanent Magnetization of Reworked Boulders in the Kingdom of Tonga"
DOI: 10.6084/m9.figshare.27079600.v2
title: <b>Underlying data for '</b><b>Computational prediction of a phage cocktail active against multidrug-resistant bacteria'</b>

description: Antibiotic misuse and overuse have led to emergence of multi-drug resistant (MDR) bacteria, creating a significant health concern for global population. Phage cocktails combine multiple phages, providing an efficient method to combat multidrug-resistant bacterial infections. In this study, a computational pipeline was used to design a phage cocktail against the MDR bacterial strains <i>Acinetobacter baumannii </i>AB0057<i>, </i><i>Klebsiella pneumoniae </i>subsp. pneumoniae<i> </i>HS11286, and <i>Pseudomonas aeruginosa </i>UCBPP-PA14<i>.</i> Prophage sequences were identified from whole genome sequences of selected bacterial strains. Prophages were annotated for open reading frames (ORFs), putative promoters, virulence factors, transcriptional terminators, ribosomal RNAs, and transfer RNAs. Dot-plot similarity analyses and phylogenetic analysis were also conducted. A total of 11 prophages were predicted from the bacterial genomic sequences. About 472 ORFs were identified along having 3 transfer RNAs. Additionally, 754 putative promoter sequences and 281 transcription terminator sequences were also detected. Comparative genomic and phylogenetic analyses revealed the diversity, similarities, and lysis potential of phages. The final designed phage cocktail consisted of five prophages including <i>Acinetobacter baumannii</i> prophages (2759376-2809756) and (3311844-3364667), and <i>Klebsiella pneumoniae</i> prophages<i> </i>(1288317-1338719),<i> </i>(1778306-1808606), and (2280703-2325555). The phage cocktail designed after rigorous validations might be useful against MDR <i>Acinetobacter baumannii</i> and <i>Klebsiella pneumoniae</i>, especially when conventional antibiotics fail to treat. Sequence similarity analyses suggested that this phage cocktail may also be effective against other carbapenemase-producing strains of <i>Klebsiella pneumoniae</i>.
DOI: 10.6084/m9.figshare.27824073
title: Supplementary Material for: Differential Effector Function of Tissue-Specific Natural Killer Cells Against Lung Tumors

description: Introduction. Natural killer (NK) cells are innate lymphoid cells capable of directly killing target cells while modulating immune effector responses. Despite their multifunctional capacities, a limited understanding of their plasticity and heterogeneity has impeded progress in developing effective NK cell-based cancer therapies. In this study, we investigated NK cell tissue heterogeneity in relation to their phenotype and effector functions against lung tumors. Methods. Using hanging-drop tumor spheroid and subcutaneously established LL/2 lung tumor models, we examined NK cell receptor diversity and its correlation with tissue-specific cytotoxicity through multiparametric flow cytometry, fluorescence imaging, and cytotoxicity assays. Results. We identified distinct patterns of cell surface receptor expression on tissue-specific NK cells that are crucial for antitumor activity. Linear regression mathematical analyses further revealed significant positive correlations between activation-associated cell surface receptors and cytotoxic capacity in NK cells from tissues such as the liver and bone marrow. Conclusion. These findings underscore the differential effector capacities of NK cells from distinct tissues, even prior to exposure to LL/2 tumor cells. This highlights the significance of tissue-specific NK cell heterogeneity and its impact on their antitumor cytotoxicity. Recognizing these distinct tissue-specific receptor expression patterns will be instrumental in developing more efficacious NK cell-based cancer treatments.
DOI: 10.6084/m9.figshare.28017053
title: Supplementary Material for: Effect of a 48-Hour Thickened Liquid Protocol on Visuospatial Skills in Young Adults

description: Introduction: Thickened liquids are frequently recommended for individuals with swallowing disorders who are at risk of aspiration. However, thickened liquids may be poorly tolerated and result in reduced fluid intake, which may impact performance in a number of areas. The purpose of this study was to examine the possible impact of a thickened liquid regimen on visuospatial skills in young healthy adults. 

Methods: Twenty young adults, ages 19-26 years, were included as participants. Baseline data consisting of urine specific gravity (USG) measurements as a marker of hydration status and completion of a visuospatial task were obtained prior to initiation of the experimental protocol. Participants in the experimental group followed a thickened liquid protocol, which consisted of drinking nectar-thick liquids for 48 hours. Data collection procedures were repeated. 

Results: Participants in the experimental group exhibited significantly higher USG levels and required more time to complete the visuospatial task post-thickened liquids. No significant change in performance accuracy was found. Participants in the experimental group reported a decrease in fluid intake. 

Conclusion: Performance accuracy on a visuospatial task was not significantly impacted by a 48-hour period of thickened liquid intake but time required to complete the task increased and was associated with mild dehydration as indicated by higher USG levels.
DOI: 10.6084/m9.figshare.28020011
title: Supplementary Material for: Biodistribution of Polymeric Nanoparticles following In-Utero Delivery to a Non-Human Primate

description: Monogenic diseases can be diagnosed before birth. Systemic fetal administration of nanoparticles (NP)s grants therapeutic access to developing stem cell populations impacted by these classes of disease. Delivery of editing reagents in these NPs administered before birth have yielded encouraging results in preclinical mouse models of monogenic diseases. To translate this strategy clinically, the safety and efficacy of this strategy in larger animals will be necessary. We performed a pilot biodistribution study in 3 fetal non-human primates (NHPs) in mid-gestation examining systemic delivery of polymeric NPs loaded with flourescent dye. We found several similarities in distribution to our experience in mice namely, extensive uptake in fetal liver and spleen. A striking finding that is not recapitulated in the mouse was the accumulation of NPs in the zones of proliferation and ossification of the fetal bone. Of great importance there did not appear to be NP accumulation in the fetal male or female germline zones or maternal tissue. These studies were vital to the next step of testing editing reagents in the fetal NHP with a goal of treating monogenic diseases before birth.