cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/nhpnt78ssy
title: Two-photon excited fluorescence scanning laser ophthalmoscopy images and software for data processing

description: The repository contains an exemplary dataset recorded during two-photon fluorescence ophthalmoscope imaging of a healthy subject's eye. We additionally provide software for data processing. The software was written by Dr. Sławomir Tomczewski with inputs from Dr. Michał Dąbrowski. This data repository is a reference for work published in J. Clin. Invest. 2022;132(2):e154218. https://doi.org/10.1172/JCI154218. 

The dataset contains raw images recorded in the fluorescence channel and corresponding reflectance frames (located in subfolders). Those images are located in 4 folders (FESH, 1-4), containing a total of 139 pairs of images. The repository also contains the background noise recorded in each channel (with the excitation laser turned off, located in the 'Background noise' folder) and data needed for background subtraction (located in the folder 'For background subtraction'). These data can be used to remove parasitic reflections, e.g., from lenses. 

Additionally, we present the results obtained after correcting for eye motion artifacts and averaging both fluorescence and reflectance frames.
DOI: 10.26188/5da5528f75432
title: EPiC database - Cement mortar

description: This material is part of the free Environmental Performance in Construction (EPiC) Database. The EPiC Database contains embodied environmental flow coefficients for 250+ construction materials using a comprehensive hybrid life cycle inventory approach.<br><br>Cement mortar contains Portland cement, sand and hydrated lime. It is used as a bonding layer for bricks, masonry blocks and stonework.<br><br>It is generally available in bags (usually up to 20 kg) and is mixed with water on site to form a highly workable paste. Once cured, it becomes hard but is designed to be weaker than the masonry elements it is used with.<br><br>A range of mortar types are available, ranging in strength depending on the mix ratio, with stronger mortars containing a higher proportion of cement. Mortars containing alternative binders are also available, including polymer cement and lime mortars.
DOI: 10.17632/kxksmyc89v
title: Stress granule assembly impairs macrophage efferocytosis

description: Original raw data for 'Stress granule assembly impairs macrophage efferocytosis'
DOI: 10.6084/m9.figshare.21814602.v1
title: Genotypes and phenotypes of rainbow trout

description: This dataset is composed of 6 files. Two files are the raw genotypes (Trout_CD.ped) and map (Omykiss_57K.map) obtained with the 57K SNP Axiom Trout Genotyping Array in PLINK 1.9 format prior to quality control filtering after SNP calling with Axiom Analysis Suite. Three files (Trout_CD.bed ; Trout_CD.bim ; Trout_CD. fam) are the genetic data in PLINK 1.9 binary format after quality controls. One file (Trout_CD_phenotype.txt) is a table of phenotype and covariates.
DOI: 10.17632/htkfy553hs
title: 3D Differencial pulse voltammograms of herbal extracts containing synthetic cannabinoids

description: This dataset contains 3D differential pulse voltammograms (changing either pulse amplitude or time) obtained from herbal extracts of street samples containing synthetic cannabinoids (SCs) in acetonitrile. Additionally, blanks with only acetonitrile and Tetrabutylammonium tetrafluoroborate (TBATFB), herbal blanks with marshmallow extracts, and lab made samples consisting of only BB-22 sprayed in marshmallow leaves are also included. Detected SCs include 5F-AKB48, AKB48, 5F-PB-22, BB-22, AB-CHMINACA, and AB-FUBINACA.
DOI: 10.6084/m9.figshare.21647795.v1
title: Supplementary Material for: Agreement between Noninvasive Hemoglobin and Laboratory Hemoglobin Measurements in Neonates: A Systematic Review and Meta-Analysis

description: <b><i>Background and Objective:</i></b> The noninvasive hemoglobin (NHb) devices are recently evaluated as an alternative to laboratory hemoglobin (LHb) in neonates. This systematic review explores the diagnostic accuracy of NHb devices for neonatal hemoglobin measurement. <b><i>Methods:</i></b> Literature related to the comparison of NHb device with LHb in neonates was searched from Medline, PubMed Central, PubMed, Web of Science, Google Scholar, and Scopus databases after PROSPERO registration. The quality of included publications was assessed by QUADAS-2 (Quality Assessment of Diagnostic Accuracy Studies). The pooled correlation coefficient and bias (precision) in Bland-Altman difference plots were used for summary statistics using MetaXL 5.0 software. <b><i>Results:</i></b> A total of 1,477 paired NHb-LHb observations were analyzed from 1,047 neonates in 10 studies. Massimo radical-pulse co-oximetry (8 studies) and Mediscan-2000 (2 studies) were used for NHb estimation. The pooled correlation coefficient between NHb and LHb was <i>r</i> = 0.94 (95% CI: 0.83–0.98, <i>p</i> &lt; 0.001), and the pooled bias (precision) was −0.013 (1.4) gm/dL between NHb and LHb measurements in Bland-Altman analysis. NHb device had better precision in stable neonates (0.91gm/dL) over sick neonates (1.66 gm/dL). <b><i>Conclusions:</i></b> Hemoglobin measurement by NHb is excellently correlated with LHb measurement with a minimal average difference. It may be used as a screening tool for hemoglobin measurement in neonates to avoid frequent phlebotomy.
DOI: 10.17632/jynt6cvhjk
title: A generator of forward neutrons for ultra-peripheral collisions: nOOn

description: The study of photon-induced reactions in collisions of heavy nuclei at RHIC and the LHC has become an important direction of the research program of these facilities in recent years. In particular, the production of vector mesons in ultra-peripheral collisions (UPC) has been intensively studied. Owing to the intense photon fluxes, the two nuclei participating in such processes undergo electromagnetic dissociation producing neutrons at beam rapidities. Here, we introduce the nOOn (pronounced noon) Monte Carlo program, which generates events containing such neutrons. nOOn is a ROOT based program that can be interfaced with existing generators of vector meson production in UPC or with theoretical calculations of such photonuclear processes. nOOn can also be easily integrated with the simulation programs of the experiments at RHIC and the LHC.
DOI: 10.17632/rh4zjz8vt3
title: NGS- IL-12 treated primary murine neuronal cultures 

description: We performed next generation sequencing of primary murine neurons stimulated with recombinant IL-12 to test the isolated effect of IL-12 on neurons, independent from a heavily inflamed CNS microenvironment. Principal component analysis (PCA) revealed a dose-dependent response to IL-12 in the neuronal transcriptome. Our computational analysis identified 1,878 significantly DEGs (p≤0.01, log ratio ≥0.5). Several of the upregulated genes have been linked to promoting neurogenesis (Fpr1, Mbdi1), neuroprotection (Timp1, Angptl4) and enhancing remyelination (Timp1, Matn2), thereby suggesting a direct neuroprotective and neurotrophic effect of IL-12. 

Sequencing raw data and processed gene expression data will be deposited into the GEO repository upon publication. Code for analyses will be available upon contacting the corresponding authors: becher@immunology.uzh.ch and mundt@immunology.uzh.ch

Sequencing raw data and processed gene expression data will be deposited into the GEO repository upon publication.
DOI: 10.4121/13600589.v3
title: Data and software supporting "Realization of a multinode quantum network of remote solid-state qubits"

description: Datasets and software to reproduce the results of the research.<br>
DOI: 10.17632/5k6yrrhng7
title: PEACH: A Sentence-Aligned Parallel English-Arabic Corpus for Healthcare

description: This paper introduces PEACH, a sentence-aligned parallel English–Arabic corpus of healthcare texts encompassing patient information leaflets and educational materials. The corpus contains 51,671 parallel sentences, totalling approximately 590,517 English and 567,707 Arabic word tokens. Sentence lengths vary between 9.52 and 11.83 words on average. As a manually aligned corpus, peach is a gold-standard corpus, aiding researchers in contrastive linguistics, translation studies, and natural language processing. It can be used to derive bilingual lexicons, adapt large language models for domain-specific machine translation, evaluate user perceptions of machine translation in healthcare, assess patient information leaflets and educational materials’ readability and lay-friendliness, and as an educational resource in translation studies. peach is publicly accessible.

Full corpus information is available through. 

Al-Sabbagh, R. (2024). PEACH: A Sentence-Aligned Parallel English-Arabic Corpus for Healthcare. Corpora, 19(3), 395-410. https://doi.org/10.3366/cor.2024.0320
DOI: 10.17632/tbnhg37jxx
title: Informasi Kejadian Bencana Dan Dampak Bencana Gempa Ambon 2019 (Field survey report)

description: These data files consist of Decision Letters published by three local governments of Central Maluku, West Seram, dan Ambon respectively. They provide detailed information about damage to houses that classified into three categories, i.e.: severely damaged houses (“Rusak Berat/RB”), moderately damaged houses (“Rusak Sedang/RS”), and minor damaged houses (“Rusak Ringan/RR”)
DOI: 10.17632/bw3p8xv4sx
title: Human branding in political marketing: a systematic literature review and agenda for future research

description: Database with the steps taken to carry out the systematic literature review, inclusion and exclusion of articles.
DOI: 10.6084/m9.figshare.4028709.v3
title: Calculations for tissue specificity of RNAseq human PRJEB2445

description: A tab-separated values (TSV) file for RefEx_tissue_specific_RNAseq_human_PRJEB2445<br>A value of "NULL" means not applicable (N/A).<br><br>Tissue specificity matrix were constructed consisting of 1 for over-expressed outliers, -1 for under-expressed outliers, and 0 for non-outliers that corresponds to the original gene expression matrix by applying the ROKU method.
DOI: 10.6084/m9.figshare.8259695.v1
title: Structural and physicochemical properties of freeze-dried açaí pulp (Euterpe oleracea Mart.)

description: Abstract The objective of this study was to characterize the structural and physicochemical properties, the bioactive compounds and the antioxidant activity of freeze-dried açaí pulp (FDAP). The morphology of freeze-dried açaí pulp showed a continuous matrix with a spongey aspect, and the X-ray diffractometry indicated that 96.17% of the molecular structure was in the amorphous state and 3.82% in the crystalline state. Freeze-dried açaí pulp presented an interesting chemical composition of macronutrients, which constituted mainly of lipids (49.14 g/100 g d.b.), proteins (9.19 g/100 g d.b.), total crude fiber (20.29 g/100 g d.b.) and total sugars (2.71 g/100 g d.b.). It also showed great amount of total phenolic compounds (1405.03 mg gallic acid/100 g d.b.) and anthocyanins (127 mg cyanidine-3-glucoside/100 g d.b.), allowing for functional properties allegations. There was significant increase in the water absorption and water solubility indices when the freeze-dried açaí pulp was submitted to a gradual increase in temperature, properties that are adequate for industrial use. Thus, the consumption of freeze-dried açaí pulp should be encouraged and also its use by the food industry in order to develop new food products.
DOI: 10.17632/29ntw7sh4r
title: Human breast cancer in situ capturing transcriptomics

description: Triplicates from 23 breast cancer patients with luminal a, luminal b, triple-negative, and HER2-positive subtypes. Please refer to metadata.csv for patient, replicate, and subtype associations.

All samples were produced using the protocol described in [1].

[1]: http://doi.org/10.1126/science.aaf2403

Changes in Version 4 and 5:
- Attempt to fix misordered contributors list

Changes in Version 3:
- Added tumor annotation files

Changes in Version 2:
- Added indices to spot files
- Dropped sample with bad spot data (23901_C1)
DOI: 10.17632/jk8c3c3nmz
title: Single-cell mapping of human brain cancer reveals tumor-specific instruction of tissue invading leukocytes

description: Ekaterina Friebel, Konstantina Kapolou, Susanne Unger, Nicolás Gonzalo Núñez, Sebastian Utz, Elisabeth Jane Rushing, Luca Regli, Michael Weller, Melanie Greter, Sonia Tugues, Marian Christoph Neidert, Burkhard Becher* *Correspondence: becher@immunology.uzh.ch
DOI: 10.17632/w67yn3fhw7
title: Spanish Cultural Sites & Facilities

description: The Spanish Cultural Sites & Facilities dataset provides geospatial and descriptive information about cultural facilities across Spain, including theaters, museums, libraries, cultural centers, and other cultural venues. The dataset consists of 24,577 records and 28 attributes, capturing key details about each facility, such as its name, classification, location, contact information, and associated institutions.

This dataset is valuable for spatial analysis, urban planning, cultural heritage management, and public policy research. It enables researchers, policymakers, and cultural organizations to analyze the distribution, accessibility, and characteristics of cultural facilities across Spain.

The dataset is stored in GeoPackage (.gpkg) format, ensuring efficient geospatial data storage and compatibility with GIS software such as QGIS, ArcGIS, and other geospatial tools.

This dataset has been developed by Econcult, the Research Group on Cultural Economics at the University of Valencia, through the collection, cleaning, and processing of data from multiple sources of information.
DOI: 10.6084/m9.figshare.22032437.v2
title: SHARE-seq TAC dataset

description: SHARE-seq TAC dataset
DOI: 10.6084/m9.figshare.5267473.v1
title: forager orientation shifts and reorientation

description: Data for the manuscript entitled <b>"Polarized light use in the nocturnal bull ant, </b><i>Myrmecia midas",</i> published in Royal Society Open Science.
DOI: 10.17632/d89gphmnsk
title: IR-QUMA

description: IR-QUMA The IR-QUMA study (Iranian Survey on Quality in Messenger Apps) is defined to evaluate the quality of some messenger apps. A questionnaire was designed to evaluate some quality-related measures, metrics and features from users’ experience point of view. The questionnaire was published in popular channels of Iranian mobile social networks, in 10 different messengers (including Telegram, Whatsapp, Instagram, Eita, Soroush, Bale, Gap, IGap, Shaad and Rubika). More than 40 communities of users in these 10 messengers have contributed to this research questionnaire. Total of data is exceeds the level of 7k filled online forms. We hash the name of these messengers randomly by assigning ID-codes from M1 to M10.
DOI: 10.17632/rpbv622wyd
title: Instances for production scheduling with stock- and staff-related restrictions

description: Datasets used in the paper "Production scheduling with stock- and staff-related restrictions". The folder "Instances/" stores all instance files for both low- and high-demand instances as per the description in the associated paper. The folder "Solutions/" stores 10 solution files per instance obtained by means of a special-purpose Late Acceptance Hill Climbing Metaheuristic. Meanwhile, the folder "Validator/" contains a ".jar" file which can be executed to validate solutions to the instances in this dataset. All folders also contain an associated "README.txt" file explaining how to use the files inside them. The file "table_avgs.txt" is a CSV containing the complete average results per instance which were summarized in the corresponding paper. Meanwhile, the file "table_costs.txt" is a CSV with the cost of each solution in the "Solutions/" folder for each execution. Instance names are formatted as T_D_R_B, where T: is either the letter "L" or "H" standing for "low-" and "high-demand" instances, respectively. D: is the number of days in the time horizon of the instance. R: the number of requests to be served within the time horizon (it is not necessarily true that all R can be served in a feasible solution). B: the length, in minutes, of a block (micro-period within a day where production of one item type at full capacity may take place). Each day is formed by a series of micro-periods. For further details concerning the instances, the interested reader is referred to the paper "Production scheduling with stock- and staff-related restrictions".
DOI: 10.17632/x2nkj7spm4
title: Финансовая модель

description: Файл с расчетами по финансовой модели ресторана, анализу чувствительнгости, сценарному анализу.
DOI: 10.6084/m9.figshare.28053170.v1
title: Brahui and Oraon: Tracing the Northern Dravidian genetic link back to Balochistan

description: The genetic origin of ethnic groups present in South Asia is complex. Widespread factors such as complex societal caste structure, language shifts, the coexistence of tribal alongside caste populations, and a varied and vast geography augment this complexity. In face of this complexity, a holistic approach is required for the study of population histories. The isolated Dravidian population, Brahui in Pakistan, represents a remnant of complex ethnolinguistic population history. Genetic studies conducted to date have not demonstrated a close genetic link between the Brahui and other Dravidian populations of the Indian subcontinent. However, none of these studies included the Kurukh-Malto populations, which are linguistically closest to the Brahui. In this study, we included the Kurukh speaking Oraon population and their neighbours in high-resolution genetic analyses to investigate their allele and haplotype sharing with the Brahui population of Pakistan. Our intrapopulation analyses on Oraon collected from Bangladesh and India suggested a a common South Asian source for the Oraon that is genetically distinct from the extent of Indian Mundari (Austroasiatic) populations. The interpopulation comparison of Oraon showed a closer genetic affinity with the geographically more distant Mawasi (North Munda) and Gond (South Dravidian) populations, rather than their immediate neighbours. Moreover, our extensive statistical analyses found no signal of an Oraon-related ancestry inBrahui. One possible explanation to this finding is that thegenetic signature related to the Dravidian population might have been entirely lost in Brahui due toextensiveadmixture with neighboring populations.
DOI: 10.6084/m9.figshare.5605561.v1
title: Af_72hpi_rep2

description: Developing maize seeds were inoculated with Aspergillus flavus and collected at 72 hours post inoculation
DOI: 10.17632/42md8nh5rt
title: Datasets Das-21, PWBI-22, CD-RISC-25 Balinese Community

description: A cross-sectional study was conducted on nine regency communities in the province of Bali, Indonesia to determine the impact of COVID-19 on the mental health of the Balinese people.  Bali Province (an island) is one of the provinces in Indonesia and has an area of 5,780.06 square kilometers. The province of Bali is divided into nineth regencies; Badung, Denpasar, Gianyar, Klungkung, Bangli, Karangasem, Buleleng, Tabanan, and Jembrana.  The research data was collected online as well as through a paper-based survey. The survey was conducted from 18 July to 22 September 2021 in the second wave of the covid-19 outbreak. At the time of this survey, the number of Covid-19 cases in Indonesia and the Bali region was at its highest peak, with more than 54,000 reported cases in the second week of July throughout Indonesia. Specifically, in Bali, it reached more than 1,900 in the second week of August.  This survey was conducted using three types of scales, namely DASS (21 items), CD RISC (25 items), and PGWBI (22 items). JASP version 0.13.1 was used to analyze descriptive statistical data (frequency, percentage, and mean) and to analyze the statistical tests (chi-squared, regression, and ANOVA). The chi-square test was conducted to assess the categorical variables of depression, anxiety, stress, resilience, and psychological well-being. Binary logistic regression was used to assess the significant variables in the bivariate analysis. Logistic regression findings were interpreted with 95% confidence intervals. Analysis of variance (ANOVA) was also carried out to assess differences between sociodemographic variables, Covid-19 history, and Covid-19 vaccine acquisition status in respondents. Participants' responses to the open questionnaire were analyzed descriptively to find the key factors related to depression, anxiety, stress, and the factors that support feelings of participant well-being during the Covid-19 pandemic.
DOI: 10.17632/chnwtj3ngn
title: EXAMINING TIME-VARYING INTEGRITY AND INTERRELATIONSHIPS AMONG GLOBAL STOCK MARKETS

description: This dataset includes data and codes used in the study titled: "EXAMINING TIME-VARYING INTEGRITY AND INTERRELATIONSHIPS AMONG GLOBAL STOCK MARKETS", along with analysis codes and library files (in R software). Necessary information cn be found in "Readme.txt" file.
DOI: 10.17632/dc6gdcz7n9
title: U2VDow30 : Dow 30 Stocks tweets for proposing User2Vec approach

description: This data set has been collected for "User2Vec: stock market prediction using deep learning with a novel representation of social network users" paper. Stock market prediction is an interesting and challenging problem for investors and financial analysts. Recently, recurrent neural networks like LSTM have shown good performance in the field of stock market prediction. Most current methods use historical market data and in some cases, the dominant direction of users and news for each day. In some cases, the opinions of social network members about the stocks are extracted to improve the prediction accuracy. Usually, the opinions of different users are treated in the same way and are given the same weights in these works. However, it is clear that these opinions have different values based on the accuracy of the prediction of the related user. In this study, the idea is to convert the opinion of each user about each stock into a vector (User2Vec) and then use these vectors to train a Recurrent Neural Network (RNN) and ultimately model the behavior of the users in the market.
The proposed user representation is composed of the features extracted from the messages posted in a social network and the market data. Here, we consider the power of the user in predicting the future of the stock based on the social network metrics, e.g. the number of the followers of the user, and the accuracy of its previous predictions. This way, the number of training data is increased and the model is effectively learned. These data are then used to train a stacked bidirectional LSTM network used for aggregating the input data and providing the final prediction. Empirical studies of the proposed model on 30 stocks of 30 Dow Jones clearly shows the superiority of the proposed model over traditional representations. For example, the prediction accuracy is about 93% for the Apple stock which is much higher than the compared models.
DOI: 10.6084/m9.figshare.21728162.v1
title: Table 6

description: Table 6. Discriminant validity assessment (Fornell-Larcker criterion)