cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vy2tb3
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is RUS.23_1",
 "TaxonKey is Limax cinereoniger Wolf, 1803"
 ]
}

 The dataset includes 53 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008406-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yngubn
title: Occurrence Download

description: A dataset containing 1839 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (United States of America, United States Minor Outlying Islands, American Samoa, Micronesia (Federated States of), Guam, Marshall Islands, Northern Mariana Islands, Puerto Rico, Palau, Virgin Islands (U.S.))",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Allium schoenoprasum L.)"
 ]
}

 The dataset includes 1839 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136940-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zsoh4g
title: Occurrence Download

description: A dataset containing 18621 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Conyza bonariensis (L.) Cronquist"
 ]
}

 The dataset includes 18621 records from 292 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004497-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e74ega
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "TaxonKey is Lepisorus platyrhynchos (J.Sm. ex Kunze) Li Wang",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 37 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005639-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqrmbn
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Upeneus tragula, Upeneus tragula Richardson 1846, Upeneus tragula, 158166826, Upeneus tragula Richardson, 1846, Upeneus tragula Richardson, 1846, Upeneus tragula Richardson, 1846, Upeneus tragula Richardson, 1846, Upeneus tragula nervous necrosis virus, Upeneus tragula nervous necrosis virus, 175931066, Upeneus tragula Richardson, 1846, Upeneus tragula Richardson, 1846, Upeneus tragula Richardson, 1846, Upeneus tragula Richardson, 1846, Upeneus tragula Richardson, 1846, Upeneus tragula Richardson, 1846, 161441449, Upeneus tragula Richardson, 1846, 175931090, 175931005, Upeneus niebuhri Guézé, 1976 [=Upeneus tragula Richardson, 1846], Upeneus oligospilus Lachner, 1954 [=Upeneus tragula Richardson, 1846], Upeneus tragula Richardson, 1846, Upeneus cf. tragula FOAI624-09, Upeneus cf. tragula FOAI625-09, Upeneus cf. tragula FOAI624-09, Upeneus cf. tragula FOAI625-09, Caligus upenei Boxshall 2018, Caligus upenei Boxshall, 2018, Argulus quadristriatus Devaraj & Ameer Hamsa, 1977, Argulus quadristriatus Devaraj and Ameer Hamsa 1977, Upeneus margarethae Uiblein & Heemstra, 2010, Upeneus margarethae Uiblein & Heemstra 2010, Upeneus tragua Richardson, 1846, Upeneus tragua Richardson, 1846, Upeneoides tragula (Richardson, 1846), Upeneus tragua Richardson, 1846, Upeneoides tragula (Richardson, 1846), 161441454, 161441456, 175930987, Upeneoides tragula (Richardson, 1846), Upeneus luzonius () non Jordan & Seale, 1907, Upeneoides tragula (Richardson, 1846), 161441451, Upeneus tragua Richardson, 1846, Upeneus variegatus Bleeker, 1849, Upeneus kuiskuiana Döderlein, 1883 [in Steindachner & Döderlein])",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((105.5 17,110.5 17,110.5 22,105.5 22,105.5 17))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 18 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136934-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sotc9d
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clusia crenata Cuatrec."
 ]
}

 The dataset includes 164 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004497-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gmst65
title: Occurrence Download

description: A dataset containing 10795 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Capra aegagrus Erxleben, 1777"
 ]
}

 The dataset includes 10795 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023708-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wj2t6g
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bouteloua eriostachya (Swallen) Reeder"
 ]
}

 The dataset includes 15 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136951-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hcdn9a
title: Occurrence Download

description: A dataset containing 150608 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Himantopus himantopus (Linnaeus, 1758)"
 ]
}

 The dataset includes 150608 records from 175 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004497-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j3uccf
title: Occurrence Download

description: A dataset containing 44275 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ruppia maritima L."
 ]
}

 The dataset includes 44275 records from 628 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098418-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/impa-c123-105980
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.15468/dl.gr9hvd
title: Occurrence Download

description: A dataset containing 959 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus hypomalacus Focke"
 ]
}

 The dataset includes 959 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098420-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n2gwce
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Romulea leipoldtii Marais"
 ]
}

 The dataset includes 68 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098421-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/impa-c123-106135
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-106290
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.6084/m9.figshare.25471208
title: Gelatin but not type I collagen promotes bacteria phagocytosis in PMA-treated U937 human lymphoma cells

description: Besides comprising scaffolding, extracellular matrix components modulate many biological processes including inflammation and cell differentiation. We previously found precoating cell plates with extracellular matrix collagen I, or its denatured product gelatin, causes aggregation of macrophage-like human lymphoma U937 cells, which are induced to differentiation by phorbol myristate treatment. In the present study, we investigated the influence of gelatin or collagen I precoating on the bacteria phagocytosis in PMA-stimulated U937 cells. Colony forming units of phagocytosed bacteria, Giemsa-staining of cells with phagocytosed bacteria, confocal microscopic and flow cytometric analysis of cells with phagocytosed FITC-labeled bacteria and non-bioactive latex beats were conducted. Gelatin precoating enhances the phagocytosis of both Gram-negative and positive bacteria, as shown by the increased colony forming units of bacteria phagocytosed by cells, and increased intracellular bacteria observed after Giemsa-staining. But collagen I has no marked influence. Confocal microscopy reveals that both live and dead FITC-bacteria were phagocytosed more in the cells with gelatin-coating but not collagen-coating. Of note, both gelatin and collagen I coating had no influence on the phagocytosis of non-bioactive latex beads. Since gelatin-coating increases autophagy but collagen I has no such impact, we are curious about the role of autophagy. Inhibiting autophagy reduced the phagocytosis of bacteria, in cells with gelatin-coating, while stimulating autophagy enhanced phagocytosis. This study finds the bacteria-phagocytosis stimulatory effect of gelatin in PMA-treated U937 cells and reveals the positive regulatory role of autophagy, predicting the potential use of gelatin products in anti-bacterial therapy.
DOI: 10.6084/m9.figshare.25471208.v1
title: Gelatin but not type I collagen promotes bacteria phagocytosis in PMA-treated U937 human lymphoma cells

description: Besides comprising scaffolding, extracellular matrix components modulate many biological processes including inflammation and cell differentiation. We previously found precoating cell plates with extracellular matrix collagen I, or its denatured product gelatin, causes aggregation of macrophage-like human lymphoma U937 cells, which are induced to differentiation by phorbol myristate treatment. In the present study, we investigated the influence of gelatin or collagen I precoating on the bacteria phagocytosis in PMA-stimulated U937 cells. Colony forming units of phagocytosed bacteria, Giemsa-staining of cells with phagocytosed bacteria, confocal microscopic and flow cytometric analysis of cells with phagocytosed FITC-labeled bacteria and non-bioactive latex beats were conducted. Gelatin precoating enhances the phagocytosis of both Gram-negative and positive bacteria, as shown by the increased colony forming units of bacteria phagocytosed by cells, and increased intracellular bacteria observed after Giemsa-staining. But collagen I has no marked influence. Confocal microscopy reveals that both live and dead FITC-bacteria were phagocytosed more in the cells with gelatin-coating but not collagen-coating. Of note, both gelatin and collagen I coating had no influence on the phagocytosis of non-bioactive latex beads. Since gelatin-coating increases autophagy but collagen I has no such impact, we are curious about the role of autophagy. Inhibiting autophagy reduced the phagocytosis of bacteria, in cells with gelatin-coating, while stimulating autophagy enhanced phagocytosis. This study finds the bacteria-phagocytosis stimulatory effect of gelatin in PMA-treated U937 cells and reveals the positive regulatory role of autophagy, predicting the potential use of gelatin products in anti-bacterial therapy.
DOI: 10.6084/m9.figshare.25423528
title: S100A12 is involved in the pathology of osteoarthritis by promoting M1 macrophage polarization via the NF-κB pathway

description: Osteoarthritis (OA) is a degenerative joint disease that affects millions worldwide. Synovitis and macrophage polarization are important factors in the development of OA. However, the specific components of synovial fluid (SF) responsible for promoting macrophage polarization remain unclear. Semi-quantitative antibody arrays were used to outline the proteome of SF. Differential expression analysis and GO/KEGG were performed on the obtained data. Immunohistochemistry and ELISA were used to investigate the relationship between SF S100A12 levels and synovitis levels in clinalclinical samples. In vitro cell experiments were conducted to investigate the effect of S100A12 on macrophage polarization. Public databases were utilized to predict and construct an S100A12-centered lncRNA-miRNA-mRNA competing endogenous RNA network, which was preliminarily validated using GEO datasets. The study outlines the protein profile in OA and non-OA SF. The results showed that the S100A12 level was significantly increased in OA SF and inflammatory chondrocytes. The OA synovium had more severe synovitis and higher levels of S100A12 than non-OA synovium. Exogenous S100A12 upregulated the levels of M1 markers and phosphorylated p65 and promoted p65 nuclear translocation, while pretreatment with BAY 11–7082 reversed these changes. It was also discovered that LINC00894 was upregulated in OA and significantly correlated with S100A12, potentially regulating S100A12 expression by acting as a miRNA sponge. This study demonstrated that S100A12 promotes M1 macrophage polarization through the NF-κB pathway, and found that LINC00894 has the potential to regulate the expression of S100A12 as a therapeutic approach.
DOI: 10.6084/m9.figshare.25423528.v1
title: S100A12 is involved in the pathology of osteoarthritis by promoting M1 macrophage polarization via the NF-κB pathway

description: Osteoarthritis (OA) is a degenerative joint disease that affects millions worldwide. Synovitis and macrophage polarization are important factors in the development of OA. However, the specific components of synovial fluid (SF) responsible for promoting macrophage polarization remain unclear. Semi-quantitative antibody arrays were used to outline the proteome of SF. Differential expression analysis and GO/KEGG were performed on the obtained data. Immunohistochemistry and ELISA were used to investigate the relationship between SF S100A12 levels and synovitis levels in clinalclinical samples. In vitro cell experiments were conducted to investigate the effect of S100A12 on macrophage polarization. Public databases were utilized to predict and construct an S100A12-centered lncRNA-miRNA-mRNA competing endogenous RNA network, which was preliminarily validated using GEO datasets. The study outlines the protein profile in OA and non-OA SF. The results showed that the S100A12 level was significantly increased in OA SF and inflammatory chondrocytes. The OA synovium had more severe synovitis and higher levels of S100A12 than non-OA synovium. Exogenous S100A12 upregulated the levels of M1 markers and phosphorylated p65 and promoted p65 nuclear translocation, while pretreatment with BAY 11–7082 reversed these changes. It was also discovered that LINC00894 was upregulated in OA and significantly correlated with S100A12, potentially regulating S100A12 expression by acting as a miRNA sponge. This study demonstrated that S100A12 promotes M1 macrophage polarization through the NF-κB pathway, and found that LINC00894 has the potential to regulate the expression of S100A12 as a therapeutic approach.
DOI: 10.25549/impa-c123-106694
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-106280
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.6084/m9.figshare.25541042
title: Causal Role of Immune Cells in Chronic Obstructive Pulmonary Disease: A Two-Sample Mendelian Randomization Study

description: Accumulating evidence has highlighted the importance of immune cells in the pathogenesis of chronic obstructive pulmonary disease (COPD). However, the understanding of the causal association between immunity and COPD remains incomplete due to the existence of confounding variables. In this study, we employed a two-sample Mendelian randomization (MR) analysis, utilizing the genome-wide association study database, to investigate the causal association between 731 immune-cell signatures and the susceptibility to COPD from a host genetics perspective. To validate the consistency of our findings, we utilized MR analysis results of lung function data to assess directional concordance. Furthermore, we employed MR-Egger intercept tests, Cochrane’s <i>Q</i> test, MR-PRESSO global test, and "leave-one-out" sensitivity analyses to evaluate the presence of horizontal pleiotropy, heterogeneity, and stability, respectively. Inverse variance weighting results showed that seven immune phenotypes were associated with the risk of COPD. Analyses of heterogeneity and pleiotropy analysis confirmed the reliability of MR results. These results highlight the interactions between the immune system and the lungs. Further investigations into their mechanisms are necessary and will contribute to inform targeted prevention strategies for COPD.
DOI: 10.6084/m9.figshare.25541042.v1
title: Causal Role of Immune Cells in Chronic Obstructive Pulmonary Disease: A Two-Sample Mendelian Randomization Study

description: Accumulating evidence has highlighted the importance of immune cells in the pathogenesis of chronic obstructive pulmonary disease (COPD). However, the understanding of the causal association between immunity and COPD remains incomplete due to the existence of confounding variables. In this study, we employed a two-sample Mendelian randomization (MR) analysis, utilizing the genome-wide association study database, to investigate the causal association between 731 immune-cell signatures and the susceptibility to COPD from a host genetics perspective. To validate the consistency of our findings, we utilized MR analysis results of lung function data to assess directional concordance. Furthermore, we employed MR-Egger intercept tests, Cochrane’s <i>Q</i> test, MR-PRESSO global test, and "leave-one-out" sensitivity analyses to evaluate the presence of horizontal pleiotropy, heterogeneity, and stability, respectively. Inverse variance weighting results showed that seven immune phenotypes were associated with the risk of COPD. Analyses of heterogeneity and pleiotropy analysis confirmed the reliability of MR results. These results highlight the interactions between the immune system and the lungs. Further investigations into their mechanisms are necessary and will contribute to inform targeted prevention strategies for COPD.
DOI: 10.25549/impa-c123-105784
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-106793
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-106019
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-106347
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-106043
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-105656
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-105573
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-106063
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.15468/dl.htsn8r
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhopalocarpus triplinervius Baill."
 ]
}

 The dataset includes 144 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098424-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/impa-c123-106126
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-105343
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-106002
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.15468/dl.zwwwht
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculus crassipes Hook.fil."
 ]
}

 The dataset includes 100 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098425-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/impa-c123-106343
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-105362
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-105628
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-106026
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.15468/dl.kwbj8w
title: Occurrence Download

description: A dataset containing 390 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Romulea ligustica Parl."
 ]
}

 The dataset includes 390 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098426-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/impa-c123-105498
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-106180
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.15468/dl.3x686z
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus hypopitys Focke"
 ]
}

 The dataset includes 24 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098427-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/impa-c123-105975
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.15468/dl.3h4hsa
title: Occurrence Download

description: A dataset containing 76566 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Country derived from coordinates, Continent derived from coordinates, Occurrence status inferred from individual count)",
 "OccurrenceStatus is Present",
 "TaxonKey is Crex crex (Linnaeus, 1758)"
 ]
}

 The dataset includes 76566 records from 279 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098393-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/impa-c123-106412
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-106624
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-106017
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.25549/impa-c123-105537
title: Mission and Diakonia Archives, VID, Stavanger
DOI: 10.15468/dl.wgm4jq
title: Occurrence Download

description: A dataset containing 995 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ficus tinctoria G.Forst."
 ]
}

 The dataset includes 995 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098428-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.