cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16419867
title: A new approach method for characterizing inter-species toxicodynamic variability

description: Inter-species differences in toxicodynamics are often a critical source of uncertainty in safety evaluations and typically dealt with using default adjustment factors. <i>In vitro</i> studies that use cells from different species demonstrated some success for estimating the relationships between life span and/or body weight and sensitivity to cytotoxicity; however, no apparent investigation evaluated the utility of these models for risk assessment. It was hypothesized that an <i>in vitro</i> model using dermal fibroblasts derived from diverse species and individuals might be utilized to inform the extent of inter-species and inter-individual variability in toxicodynamics. To test this hypothesis and characterize both inter-species and inter-individual variability in cytotoxicity, concentration-response cytotoxicity screening of 40 chemicals in primary dermal fibroblasts from 68 individuals of 54 diverse species was conducted. Chemicals examined included drugs, environmental pollutants, and food/flavor/fragrance agents; most of these were previously assessed either <i>in vivo</i> or <i>in vitro</i> for inter-species or inter-individual variation. Species included humans, the typical preclinical species and representatives from other orders of mammals and birds. Data demonstrated that both inter-species and inter-individual components of variability contribute to the observed differences in sensitivity to cell death. Further, it was found that the magnitude of the observed inter-species and inter-individual differences was chemical-dependent. This study contributes to the paradigm shift in risk assessment from reliance on <i>in vivo</i> toxicity testing to higher-throughput <i>in vitro</i> or alternative approaches, extending the strategy to replace use of default adjustment factors with experimental characterization of toxicodynamic inter-individual variability and to also address toxicodynamic inter-species variability.
DOI: 10.6084/m9.figshare.16419867.v1
title: A new approach method for characterizing inter-species toxicodynamic variability

description: Inter-species differences in toxicodynamics are often a critical source of uncertainty in safety evaluations and typically dealt with using default adjustment factors. <i>In vitro</i> studies that use cells from different species demonstrated some success for estimating the relationships between life span and/or body weight and sensitivity to cytotoxicity; however, no apparent investigation evaluated the utility of these models for risk assessment. It was hypothesized that an <i>in vitro</i> model using dermal fibroblasts derived from diverse species and individuals might be utilized to inform the extent of inter-species and inter-individual variability in toxicodynamics. To test this hypothesis and characterize both inter-species and inter-individual variability in cytotoxicity, concentration-response cytotoxicity screening of 40 chemicals in primary dermal fibroblasts from 68 individuals of 54 diverse species was conducted. Chemicals examined included drugs, environmental pollutants, and food/flavor/fragrance agents; most of these were previously assessed either <i>in vivo</i> or <i>in vitro</i> for inter-species or inter-individual variation. Species included humans, the typical preclinical species and representatives from other orders of mammals and birds. Data demonstrated that both inter-species and inter-individual components of variability contribute to the observed differences in sensitivity to cell death. Further, it was found that the magnitude of the observed inter-species and inter-individual differences was chemical-dependent. This study contributes to the paradigm shift in risk assessment from reliance on <i>in vivo</i> toxicity testing to higher-throughput <i>in vitro</i> or alternative approaches, extending the strategy to replace use of default adjustment factors with experimental characterization of toxicodynamic inter-individual variability and to also address toxicodynamic inter-species variability.
DOI: 10.6073/pasta/07bf9a491ea7d08459b5849ba703634f
title: Baltimore Ecosystem Study: Lawn productivity 2006-2007

description: Urban grasslands cover large land areas in human-dominated landscapes, but little is known about how these landscapes cycle carbon (C). In this study, we examine turfgrass biomass and productivity at thirty-three urban grassland sites within the Gwynns Fall watershed (Baltimore, MD). These sites are characteristic of residential conditions in the region and were selected to provide contrasts in urban ecosystem structure (density of coarse vegetation and built structures) as well as historical (pre-development) land use. Aboveground net primary productivity (ANPP) was measured as the sum of clipping production plus stubble, thatch, and moss production. This work provides context for understanding the impact of urban expansion on regional ecosystem C dynamics and identifies specific needs related to standardized methods for measuring turfgrass ANPP in urban grassland systems.
DOI: 10.6073/pasta/d0fdedc7fe492aeed90f7d13eea736a1
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 12 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.5281/zenodo.6342013
title: List of benthic macroinvertebrate taxa from the upper Paraná River floodplain: summarizing information from a literature search

description: We created a checklist of benthic macroinvertebrates taxa found in the environments of the upper Parana River floodplain according to the information found in published articles. The checklist data presents the taxa list, the substrate type, the environment type, and the year that each taxon was initially recorded for the region. We searched for data on aquatic macroinvertebrates recorded in the upper Paraná River floodplain by reviewing published articles and reports (grey literature). We took data from an extensive literature search at the ISI Web of Knowledge, SciELO, and Scopus websites, using the keyword combination “upper Paraná River” or “Paraná River” and “floodplain” or “wetland” and “macroinvertebrate*” for the search. We selected articles published between 1990 and 2020. We selected the articles following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) model (Liberati et al., 2009) and considered the selection in four steps: (1) the country of the study, (2) the title, (3) the abstract, and (4) the full text. The selection of papers followed some eligible parameters such as type of organisms, study area, and the presence of taxa data. During the selection, we excluded macroinvertebrates recorded as parasites or those found in studies of vertebrate feeding habits. Articles that contained these two criteria were excluded from the analyses. The articles that remained were analysed regarding the type of substrate where the macroinvertebrates were recorded (i.e., sediment, macrophytes, or artificial substrates), type of environment where each taxon was found (i.e., lentic or lotic environment), and the year in which each taxon was recorded for the first time in the upper Paraná River floodplain.
description: This dataset is a supplement to the article: "On the significance of wetlands: Three decades of aquatic macroinvertebrate monitoring programs in a Neotropical floodplain" - Acta Limnologica Brasiliensia. The authors thank are grateful to the funding agencies CAPES and CNPq.
DOI: 10.5281/zenodo.6342012
title: List of benthic macroinvertebrate taxa from the upper Paraná River floodplain: summarizing information from a literature search

description: We created a checklist of benthic macroinvertebrates taxa found in the environments of the upper Parana River floodplain according to the information found in published articles. The checklist data presents the taxa list, the substrate type, the environment type, and the year that each taxon was initially recorded for the region. We searched for data on aquatic macroinvertebrates recorded in the upper Paraná River floodplain by reviewing published articles and reports (grey literature). We took data from an extensive literature search at the ISI Web of Knowledge, SciELO, and Scopus websites, using the keyword combination “upper Paraná River” or “Paraná River” and “floodplain” or “wetland” and “macroinvertebrate*” for the search. We selected articles published between 1990 and 2020. We selected the articles following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) model (Liberati et al., 2009) and considered the selection in four steps: (1) the country of the study, (2) the title, (3) the abstract, and (4) the full text. The selection of papers followed some eligible parameters such as type of organisms, study area, and the presence of taxa data. During the selection, we excluded macroinvertebrates recorded as parasites or those found in studies of vertebrate feeding habits. Articles that contained these two criteria were excluded from the analyses. The articles that remained were analysed regarding the type of substrate where the macroinvertebrates were recorded (i.e., sediment, macrophytes, or artificial substrates), type of environment where each taxon was found (i.e., lentic or lotic environment), and the year in which each taxon was recorded for the first time in the upper Paraná River floodplain.
description: This dataset is a supplement to the article: "On the significance of wetlands: Three decades of aquatic macroinvertebrate monitoring programs in a Neotropical floodplain" - Acta Limnologica Brasiliensia. The authors thank are grateful to the funding agencies CAPES and CNPq.
DOI: 10.5281/zenodo.6342080
title: Arius augustus RB0475 decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6342079
title: Arius augustus RB0475 decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6342093
title: Neptis clinioides decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6342092
title: Neptis clinioides decontaminated FSCR

description: .
DOI: 10.6073/pasta/33068fdbb6f62e2e32ee1ad9ca261893
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 12 meteorological station: 5-minute summary wind and air temperature data: 2013 - ongoing

description: This data package contains 5-minute air temperature and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-12 met station. Average air temperature, wind speed, and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This is a subset of baseline weather data collected at the 15 Jornada Basin LTER CSIS study blocks, New Mexico. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/01a15d554053702b5a2a52ca9d76ea97
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 12 meteorological station: 1-hour summary data: 2017 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-12 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/d8900e76d5ddeec38e8fc0de90cc8c5c
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 12 meteorological station: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at 10 cm at CSIS Block-12. Collection of soil volumetric water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured at 10 cm depth at 3 locations at each of the 4 plots per block. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded every 30 minutes at an automated meteorological station installed at Jornada LTER CSIS Block-12 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/22d515b5f7816cdea34e14cd41a7415f
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 12 meteorological station: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily Average of 30-minute Soil Volumetric Water Content data at 10 cm at CSIS Block-12. Collection of soil water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured every 30 minutes at 10 cm depth at 3 locations at each of the 4 plots per block and averaged for the daily value. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded at an automated meteorological station installed at Jornada LTER CSIS Block-12 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/29515d0231d8ff1fb5d51c067abec6ce
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 12 meteorological station: Daily summary data: 2013 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-12 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.13020/d6ms32
title: Single Nucleotide Polymorphism Calls for 49 Giant Pandas

description: This dataset contains 150,025 single nucleotide polymorphism (SNP) calls for 49 giant pandas. The SNPs are called from whole-genome shotgun sequencing data. The data is useful for studying the population genetics of pandas and are released in tandem with a paper describing conclusions drawn from this dataset.
description: This dataset includes SNPs in PLINK format, SNPs in GVCBLUP format and a supplemental table describing the genetic samples. After downloading resequencing reads for 49 pandas from the NCBI Sequence Read Archive, steps were taken to sort, filter and convert the data and prepare it for further analysis in PLINK and GVCBLUP. The files containing SNPs can be opened by text editors. During the study, these files were processed in PLINK (version 3.9) and GVCBLUP (version 1.90 beta). PLINK is available at http://pngu.mgh.harvard.edu/~purcell/plink/plink2.shtml. GVCBLUP is available at http://animalgene.umn.edu/gvcblub
DOI: 10.6073/pasta/a884ec24807101905bdeb58cec685739
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 13 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.19248248
title: Raw data for change in the salivary pH and growth of Streptococcus mutans

description: The raw data for Change in the salivary pH after consumption of test product and Table 2: Growth of Streptococcus mutans colonies after consumption of test product is present in the excel spreadsheet.
DOI: 10.6084/m9.figshare.19248248.v1
title: Raw data for change in the salivary pH and growth of Streptococcus mutans

description: The raw data for Change in the salivary pH after consumption of test product and Table 2: Growth of Streptococcus mutans colonies after consumption of test product is present in the excel spreadsheet.
DOI: 10.15468/dl.kk6ye5
title: Occurrence Download

description: A dataset containing 4722 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia salicina Lindl.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4722 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004665-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rz64as
title: Occurrence Download

description: A dataset containing 3115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vaccinium oxycoccos L.",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 3115 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001608-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.prfbxv
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scolopocryptops sexspinosus Say, 1821",
 "Country is United States of America",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 }
 ]
}

 The dataset includes 99 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007936-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p9ukau
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum claviculatum W.Wright"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160009-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rrhpzf
title: Occurrence Download

description: A dataset containing 77397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aira caryophyllea L."
 ]
}

 The dataset includes 77397 records from 451 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292417-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.enxdwu
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum piliferum Rchb.f."
 ]
}

 The dataset includes 123 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160010-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hfs2s6
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus austrotibetanus Podlech & L.R.Xu"
 ]
}

 The dataset includes 24 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018776-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hakjp2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nettastoma melanurum Rafinesque, 1810",
 "Country is Colombia"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007936-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b6s2g7
title: Occurrence Download

description: A dataset containing 4315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Bernice P. Bishop Museum",
 "TaxonKey is Achatinella Swainson, 1828"
 ]
}

 The dataset includes 4315 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043638-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.