cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/85b76016c5fbdfc4ca07bab1c1979699
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 4 meteorological station: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at 10 cm at CSIS Block-4. Collection of soil volumetric water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured at 10 cm depth at 3 locations at each of the 4 plots per block. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded every 30 minutes at an automated meteorological station installed at Jornada LTER CSIS Block-4 site. This is an ONGOING dataset.
DOI: 10.5281/zenodo.5076589
title: Artificial Neural Network Symbol Demapper for Coherent Optical Fiber Systems

description: M-files and datasets that implement an artificial neural network (ANN) demapper targeted to the compensation of fiber nonlinearities in coherent optical transmission systems. The dataset contains simulation data of a 11-channel WDM fiber link with numerical propagation implemented by the split-step Fourier method over standard single-mode fiber with 100 km per span and inline optical amplification with 5 dB noise figure. The launched optical power is varied in the range of 0 to 5 dBm and the distance is swept up to 30 fiber spans. The transmitted signal is a root-raised cosine single-carrier 16QAM at 64 Gbaud.
DOI: 10.5281/zenodo.5076588
title: Artificial Neural Network Symbol Demapper for Coherent Optical Fiber Systems

description: M-files and datasets that implement an artificial neural network (ANN) demapper targeted to the compensation of fiber nonlinearities in coherent optical transmission systems. The dataset contains simulation data of a 11-channel WDM fiber link with numerical propagation implemented by the split-step Fourier method over standard single-mode fiber with 100 km per span and inline optical amplification with 5 dB noise figure. The launched optical power is varied in the range of 0 to 5 dBm and the distance is swept up to 30 fiber spans. The transmitted signal is a root-raised cosine single-carrier 16QAM at 64 Gbaud.
DOI: 10.6073/pasta/fee23375d9985c9126aa5f93b52224f9
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 4 meteorological station: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily Average of 30-minute Soil Volumetric Water Content data at 10 cm at CSIS Block-4. Collection of soil water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured every 30 minutes at 10 cm depth at 3 locations at each of the 4 plots per block and averaged for the daily value. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded at an automated meteorological station installed at Jornada LTER CSIS Block-4 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/6bf0542aac975b3c02938f341db00541
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 4 meteorological station: Daily summary data: 2013 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-4 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/64ecd62a5fe476446cc9e892c56175eb
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 4 meteorological station: 1-second summary precipitation data: 2017 - ongoing

description: 1-second summary precipitation data at CSIS Block-4 met station. Total precipitation per second is recorded only if there is measurable precipitation. This is recorded at an automated meteorological station installed at Jornada LTER CSIS Block-4 site.. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset. IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping bucket rain gauge. If there is missing data due to equipment or other problems, there will be no indication of this within this dataset. The user needs to review precipitation values in the 30 minute or hourly summary datasets to determine if there are missing data in this 1 second detailed precipitation dataset.
DOI: 10.6073/pasta/02843c3111e8e5c358673ea4509d660c
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 5 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.5281/zenodo.5076583
title: In-stream tidal energy resources in macrotidal non-cohesive sediment environments: effect of morphodynamic changes at two bays in the upper Gulf of California

description: Project_info: This dataset was obtained during the project CeMIE-Oceano (2017-2021), and was party financed by SENER-CONACyT (contract no. 249795).<br> License: The authors appreciate that users of these data: 1) Contact Vanesa Magar (vmagar@cicese.edu.mx) to follow the uses of the data, and 2) Include the requested acknowledgment (cite using the DOI of this dataset) in any presentations or publications. This dataset includes data used for producing Figures 4,5 and Tables 1,2 of paper "IN-STREAM TIDAL ENERGY RESOURCES IN MACROTIDAL NON-COHESIVE SEDIMENT ENVIRONMENTS: EFFECT OF MORPHODYNAMIC CHANGES AT TWO BAYS IN THE UPPER GULF OF CALIFORNIA" published in<br> Journal of Marine Science and Engineering. Bermúdez-Romero, Anahí; Vanesa Magar; Markus S. Gross; Victor M. Godínez; Manuel López-Mariscal; Julio Candela. In-Stream tidal energy resources in macrotidal non-cohesive sediment environment: Effect ofmorphodynamic changes at two bays in the upper Gulf of California. Journal of Marine Science and Enginnering, 9:411. https://doi.org/10.3390/jmse9040411
DOI: 10.5281/zenodo.5076582
title: In-stream tidal energy resources in macrotidal non-cohesive sediment environments: effect of morphodynamic changes at two bays in the upper Gulf of California

description: Project_info: This dataset was obtained during the project CeMIE-Oceano (2017-2021), and was party financed by SENER-CONACyT (contract no. 249795).<br> License: The authors appreciate that users of these data: 1) Contact Vanesa Magar (vmagar@cicese.edu.mx) to follow the uses of the data, and 2) Include the requested acknowledgment (cite using the DOI of this dataset) in any presentations or publications. This dataset includes data used for producing Figures 4,5 and Tables 1,2 of paper "IN-STREAM TIDAL ENERGY RESOURCES IN MACROTIDAL NON-COHESIVE SEDIMENT ENVIRONMENTS: EFFECT OF MORPHODYNAMIC CHANGES AT TWO BAYS IN THE UPPER GULF OF CALIFORNIA" published in<br> Journal of Marine Science and Engineering. Bermúdez-Romero, Anahí; Vanesa Magar; Markus S. Gross; Victor M. Godínez; Manuel López-Mariscal; Julio Candela. In-Stream tidal energy resources in macrotidal non-cohesive sediment environment: Effect ofmorphodynamic changes at two bays in the upper Gulf of California. Journal of Marine Science and Enginnering, 9:411. https://doi.org/10.3390/jmse9040411
DOI: 10.6073/pasta/299a53a9d37f1a98995cb0157c086554
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 5 meteorological station: 5-minute summary wind and air temperature data: 2013 - ongoing

description: This data package contains 5-minute air temperature and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-5 met station. Average air temperature, wind speed, and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This is a subset of baseline weather data collected at the 15 Jornada Basin LTER CSIS study blocks, New Mexico. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.25345/c5nn7m
title: MassIVE MSV000087768 - 210706 B subtilis MALDI MSI data
title: MALDI MSI data from Bacillus subtilis collected during method development for sample preparation
DOI: 10.6073/pasta/9612e9727f6dc3158ceecfe5092ba41d
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 5 meteorological station: 1-hour summary data: 2017 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-5 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.5281/zenodo.5057610
title: "@alex, this fixes #9": Analysis of Referencing Patterns in Pull Request Discussions

description: This publication consists of a dataset of 7k references manually identified in 450 Pull request (PR) discussion threads sampled from GitHub in CSV format. In addition to the dataset, it also contains R code files which were written to analyze this dataset statistically. This dataset is released under the research, which is accepted for publication at CSCW 2021 conference, titled "@alex, this fixes #9": Analysis of Referencing Patterns in Pull Request Discussions". <strong>Paper Abstract</strong> Pull Requests (PRs) are a frequently used method for proposing changes to source code repositories. When discussing proposed changes in a PR discussion, stakeholders often reference a wide variety of information objects for establishing shared awareness and common ground. Previous work has not considered how referential behavior impacts collaborative software development via PRs. This knowledge gap is the major barrier in evaluating the current support for referencing in PRs and improving them. We conducted an explorative analysis of ~7K references, collected from 450 public PRs on GitHub, and constructed taxonomies of referent types and expressions. Using our annotated dataset, we identified several patterns in the use of references. Referencing source code elements was prevalent but the authoring interface lacks support for it. Three classes of contextual factors influence referencing behaviors: referent type, discussion thread, and project attributes. Referencing patterns may indicate PR outcomes (e.g., merged PRs frequently reference issues, users, and tests). We conclude with design implications to support more effective referencing in PR discussion interfaces.
DOI: 10.25345/c5hz63
title: MassIVE MSV000087769 - An engineered transcriptional reporter of protein localization identifies regulators of mitochondrial and ER membrane protein trafficking in high-throughput screens
title: Coukos R, Yao D, Sanchez MI, Strand ET, Olive ME, Udeshi ND, Weissman JS, Carr SA, Bassik MC, Ting AY. 2021. The trafficking of specific protein cohorts to the correct subcellular location at the correct time is essential for every signaling and regulatory process in biology. Gene perturbation screens could provide a powerful approach to probe the molecular mechanisms of protein trafficking, but only if protein localization or mislocalization can be tied to a simple and robust phenotype for cell selection, such as cell proliferation or FACS. To broadly empower the study of protein trafficking processes with gene perturbation, we developed a genetically-encoded molecular tool named HiLITR. HiLITR converts protein colocalization into proteolytic release of a membrane-anchored transcription factor, which drives the expression of a chosen reporter gene. Using HiLITR in combination with FACS-based CRISPRi screening in human cell lines, we identify genes that influence the trafficking of mitochondrial and ER tail-anchored proteins. We show that loss of the SUMO E1 component SAE1 results in the mislocalization and destabilization of mitochondrial tail-anchored proteins. We also demonstrate a distinct regulatory role for EMC10 in the ER membrane complex, opposing the transmembrane-domain insertion activity of the complex. Through transcriptional integration of complex cellular functions, HiLITR expands the scope of biological processes that can be studied by genetic perturbation screening technologies.
DOI: 10.6073/pasta/4060a293a715d1b2fc20938310946e47
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 5 meteorological station: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at 10 cm at CSIS Block-5. Collection of soil volumetric water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured at 10 cm depth at 3 locations at each of the 4 plots per block. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded every 30 minutes at an automated meteorological station installed at Jornada LTER CSIS Block-5 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/58d6295efe9e6ae9fbf2bd594bcbe1c1
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 5 meteorological station: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily Average of 30-minute Soil Volumetric Water Content data at 10 cm at CSIS Block-5. Collection of soil water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured every 30 minutes at 10 cm depth at 3 locations at each of the 4 plots per block and averaged for the daily value. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded at an automated meteorological station installed at Jornada LTER CSIS Block-5 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/99fa19e79859caf1c1c708989e1e873c
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 5 meteorological station: Daily summary data: 2013 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-5 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/c54a1f85050a7b24adcbb32e79e353a2
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 5 meteorological station: 1-second summary precipitation data: 2017 - ongoing

description: 1-second summary precipitation data at CSIS Block-5 met station. Total precipitation per second is recorded only if there is measurable precipitation. This is recorded at an automated meteorological station installed at Jornada LTER CSIS Block-5 site.. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset. IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping bucket rain gauge. If there is missing data due to equipment or other problems, there will be no indication of this within this dataset. The user needs to review precipitation values in the 30 minute or hourly summary datasets to determine if there are missing data in this 1 second detailed precipitation dataset.
DOI: 10.6073/pasta/e1d7d456304bf064930a97da953c66c6
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 6 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.25919/fr8e-k267
title: Good Wheat Proteomics

description: Collection of proteomics data related to Good Wheat, a low gluten wheat variety
DOI: 10.25919/hknw-mv81
title: Optimisation of the extraction methods for proteomics analysis of three narrow-leafed lupin cultivars

description: In this study the proteome composition of three narrow-leafed lupin varieties (Tanjil, Unicrop, and P27255) resulted form four extraction methods was studied using discovery proteomics, this was followed by targeted quantitative analysis of the major lupin seed storage proteins known as conglutins. The collection includes the following data: 1- The information-dependent acquisition mass spectrometry (IDA-MS) data acquired on acquired on TripleTOF 6600 (SCIEX) mass 2- ProteinPilot Reports for the IDA data which includes information about the data quality and protein and peptide identifications 3-multiple reaction monitoring-mass spectrometry (LC-MRM-MS) data acquired on a 6500 QTRAP mass spectrometer (SCIEX)
DOI: 10.6073/pasta/1524298d9295f59b429c6a096ee1d13f
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 6 meteorological station: 1-hour summary data: 2017 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-6 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/515d3b4d9bcb2bc0df50e79d7efd59a1
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 6 meteorological station: 5-minute summary wind and air temperature data: 2013 - ongoing

description: This data package contains 5-minute air temperature and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-6 met station. Average air temperature, wind speed, and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This is a subset of baseline weather data collected at the 15 Jornada Basin LTER CSIS study blocks, New Mexico. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.