cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5596865
title: Plant genetic diversity affects interactions among multiple trophic levels

description: <strong>A datasheet to reveal plant genetic diversity effects on the interactions among multiple trophic levels</strong>
DOI: 10.5281/zenodo.5596817
title: Plant genetic diversity affects interactions among multiple trophic levels

description: <strong>A datasheet to reveal plant genetic diversity effects on the interactions among multiple trophic levels</strong>
DOI: 10.5281/zenodo.5827568
title: Plant genetic diversity affects interactions among multiple trophic levels

description: <strong>R codes for p</strong><strong>lant genetic diversity effects on the interactions among multiple trophic levels</strong>
DOI: 10.5281/zenodo.5827567
title: Plant genetic diversity affects interactions among multiple trophic levels

description: <strong>R codes for p</strong><strong>lant genetic diversity effects on the interactions among multiple trophic levels</strong>
DOI: 10.6084/m9.figshare.18011000.v1
title: Halogenation of estrogens catalysed by a fungal chloroperoxidase

description: Chloroperoxidase (CPO) is a haeme-thiolate enzyme able to catalyse the halogenation and oxidation of a wide range of organic substrates. In this work, the CPO-catalysed chlorination and bromination reaction of natural estrogens was characterised. Estradiol, estrone and equiline were efficiently converted to halogenated compounds in the presence of chloride or bromide and hydrogen peroxide. The catalytic efficiency of CPO in this reaction is similar to that measured for other aromatic substrates; as expected the bromination reaction proceeds more efficiently than the chlorination reaction. Three major products were detected for chlorination of estradiol; two of them were monohalogenated compounds while a third product was a dihalogenated compound at positions 2 and 4 of the aromatic ring A. Chlorinated compounds are not substrates for tyrosinase, suggesting that the halogenated form of estrogens is less susceptible to form <i>o</i>-quinones.
DOI: 10.6084/m9.figshare.18011000
title: Halogenation of estrogens catalysed by a fungal chloroperoxidase

description: Chloroperoxidase (CPO) is a haeme-thiolate enzyme able to catalyse the halogenation and oxidation of a wide range of organic substrates. In this work, the CPO-catalysed chlorination and bromination reaction of natural estrogens was characterised. Estradiol, estrone and equiline were efficiently converted to halogenated compounds in the presence of chloride or bromide and hydrogen peroxide. The catalytic efficiency of CPO in this reaction is similar to that measured for other aromatic substrates; as expected the bromination reaction proceeds more efficiently than the chlorination reaction. Three major products were detected for chlorination of estradiol; two of them were monohalogenated compounds while a third product was a dihalogenated compound at positions 2 and 4 of the aromatic ring A. Chlorinated compounds are not substrates for tyrosinase, suggesting that the halogenated form of estrogens is less susceptible to form <i>o</i>-quinones.
DOI: 10.25721/3pc5-c540
title: Fête de la Saint Marcel : sortie des complies
DOI: 10.5258/soton/d2066
title: Raw data for the article "An Investigation Into the Resistance of Spherical Nucleic Acids Against DNA Enzymatic Degradation" 

description: This dataset supports the publication:
"An Investigation Into the Resistance of Spherical Nucleic Acids Against DNA Enzymatic Degradation"
Maria-Eleni Kyriazi, Afaf H. El-Sagheer, Igor L. Medintz, Tom Brown, Antonios G. Kanaras*
The paper has been accepted for publication in the ACS Journal, Bioconjugate Chemistry
DOI: 10.5281/zenodo.5601979
title: Webis-Exhibition-Questions-21

description: The Webis-Exhibition-Questions-21 comprises 849 manually categorized questions (557 English, 292 German) from 63 participants combined with a detailed interaction log, which allows replaying each session (29 hours total) for in-depth analyses. If you use this dataset in your research, please cite it using [this paper]. [replay]
DOI: 10.5281/zenodo.5601978
title: Webis-Exhibition-Questions-21

description: The Webis-Exhibition-Questions-21 comprises 849 manually categorized questions (557 English, 292 German) from 63 participants combined with a detailed interaction log, which allows replaying each session (29 hours total) for in-depth analyses. If you use this dataset in your research, please cite it using [this paper]. [replay]
DOI: 10.5281/zenodo.5809151
title: Urban Soundscapes in the Imaginaries of Native Digital Users: Guidelines for Soundscape Design

description: Collages and narratives collected in Seoul and in Paris to illustrate the participant's experience with urban soundscapes, together with their full semantic analyses according to the analysis grid presented in the reference publication.
DOI: 10.5281/zenodo.5809150
title: Urban Soundscapes in the Imaginaries of Native Digital Users: Guidelines for Soundscape Design

description: Collages and narratives collected in Seoul and in Paris to illustrate the participant's experience with urban soundscapes, together with their full semantic analyses according to the analysis grid presented in the reference publication.
DOI: 10.6084/m9.figshare.18012329
title: Modeling, molecular dynamics and docking studies of a full-length <i>Echinococcus granulosus</i> 2DBD nuclear receptor

description: Nuclear receptors are ligand-activated transcription factors capable of regulating the expression of complex gene networks. The family includes seven subfamilies of protein with a wide phylogenetic distribution. A novel subfamily with two DNA-binding domains (2DBDs) has been first reported in <i>Schistosoma mansoni</i> (Platyhelminth, Trematoda). Employing an ab initio protocol and homology modeling methods, the full-length 3D structure of the Eg2DBDα.1 nuclear receptor from <i>Echinococcus granulosus</i> (Platyhelminth, Cestoda) was generated. The model analysis reveals the presence of the conserved three-layered alpha-helical sandwich structure in the ligand binding domain, and a particularly long and flexible hinge region. Molecular dynamics simulations were performed previous to dock a conformational library of fatty acids and retinoic acids. Our results indicate that oleic and linoleic acids are suitable ligands to this receptor. The ligand-protein complex is stabilized mainly by hydrogen bonds and hydrophobic interactions. The fact that 2DBD nuclear receptors have not been identified in vertebrates confers particular interest to these nuclear receptors, not only concerning their structure and function but as targets of new anthelmintic drugs. Communicated by Ramaswamy H. Sarma
DOI: 10.5281/zenodo.5826344
title: Stevia rebaudiana decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5826343
title: Stevia rebaudiana decontaminated FSCR

description: .
DOI: 10.25345/c5kg5h
title: MassIVE MSV000088656 - Deep peptidomics analysis of Drosophila melanogaster
title: A deep peptidomics workflow was used to identify alternative proteins in Drosophila melanogaster samples.
DOI: 10.15468/b4gvdj
title: Speciation and secondary contact in a fossorial island endemic, the São Tomé caecilian

description: This dataset contains the digitized treatments in Plazi based on the original journal article O’Connell, Kyle A., Prates, Ivan, Scheinberg, Lauren A., Mulder, Kevin P., Bell, Rayna C. (2021): Speciation and secondary contact in a fossorial island endemic, the São Tomé caecilian. Molecular Ecology 30 (12): 1-13, DOI: 10.1111/mec.15928
DOI: 10.18112/openneuro.ds003977.v1.0.0
title: Structural, diffusion and rs-functional MRI data in Macaque Monkeys
DOI: 10.6084/m9.figshare.18010175.v1
title: README_Hyperspectral_radiance_image_pairs_2021

description: README file for Figshare Collection "Hyperspectral radiance image pairs used in Foster, D.H. (2021). Fluctuating environmental light limits number of surfaces visually recognizable by colour. Scientific Reports, 11, 2102 (https://rdcu.be/cd15y)"<br>
DOI: 10.17033/data.00000282
title: WeValue InSitu Workshop

description: WeValue InSitu Workshop transcripts coded for Polanyi TET micro-processes... Analysis Material 1: WeValue InSitu Event with a group of teachers in China... Analysis Material 1: WeValue InSitu Event with a group of teachers in Nigeria... This document contains real excerpts from two WeValue InSitu workshop events which each took place with a group of teachers within 2018-2020.... We present the coding of another group of teachers’ WeValue InSitu event transcript excerpt using the five-stage tacit-explicit translation sub-process concepts. A consistent pattern was observed with the draft TET sub-process concepts which makes for transferability of TET as a framework for analyzing dialogues.
description: workshop transcriptions
DOI: 10.5281/zenodo.5824925
title: BNN benchmarks and raw data of experiments

description: Supplementary materials for CP21 paper: Engineering an Efficient PB-XOR Solver. 1. BNN benchmarks used in the experiments. 2. Raw data of the experiments.
DOI: 10.5281/zenodo.5526834
title: BNN benchmarks and raw data of experiments

description: Supplementary materials for CP21 paper: Engineering an Efficient PB-XOR Solver. 1. BNN benchmarks used in the experiments. 2. Raw data of the experiments.
DOI: 10.5281/zenodo.5827705
title: Melierax canorus SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5827704
title: Melierax canorus SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.17378384
title: Gunn_chaet_behaviour_2022

description: Data is from 20 butterflyfish individuals, 10 from a high food resource site and 10 from a low food resource site with each individual observed on five separate occasions.<br>Data includes information on the time individuals invested in different behaviours, benthic data, specifically coral cover for each site, and the density of the focal butterflyfish species and a competing species.
DOI: 10.34740/kaggle/dsv/3015661
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.25592/uhhfdm.9783
title: Beta maṣāḥǝft Data

description: Data is maintained here https://github.com/BetaMasaheft This dump is provided as additional security and to facilitate reuse. Includes the Ethio-SPaRe data and the IslHornAfr data. Each file contains specific attribution and is visible in the online application https://betamasaheft.eu accessing it XML, RDF or HTML.
description: see https://betamasaheft.eu/apidoc.html and https://betamasaheft.eu/lod.html for additional forms of access to the data in its latest available version
DOI: 10.25592/uhhfdm.9784
title: Beta maṣāḥǝft Data

description: Data is maintained here https://github.com/BetaMasaheft This dump is provided as additional security and to facilitate reuse. Includes the Ethio-SPaRe data and the IslHornAfr data. Each file contains specific attribution and is visible in the online application https://betamasaheft.eu accessing it XML, RDF or HTML.
description: see https://betamasaheft.eu/apidoc.html and https://betamasaheft.eu/lod.html for additional forms of access to the data in its latest available version
DOI: 10.25592/uhhfdm.132
title: Beta maṣāḥǝft Data

description: Data is maintained here https://github.com/BetaMasaheft This dump is provided as additional security and to facilitate reuse. Includes the Ethio-SPaRe data and the IslHornAfr data. Each file contains specific attribution and is visible in the online application https://betamasaheft.eu accessing it XML, RDF or HTML.
description: see https://betamasaheft.eu/apidoc.html and https://betamasaheft.eu/lod.html for additional forms of access to the data in its latest available version
DOI: 10.5281/zenodo.3928559
title: Trajectory and input files for "Coating of magnetic nanoparticles affects their interactions with model cell membranes"

description: Input and output files, including trajectories, for the study published in BBA - General Subjects : "Coating of magnetic nanoparticles affects their interactions with model cell membranes" https://doi.org/10.1016/j.bbagen.2020.129671
DOI: 10.5281/zenodo.3928558
title: Trajectory and input files for "Coating of magnetic nanoparticles affects their interactions with model cell membranes"

description: Input and output files, including trajectories, for the study published in BBA - General Subjects : "Coating of magnetic nanoparticles affects their interactions with model cell membranes" https://doi.org/10.1016/j.bbagen.2020.129671
DOI: 10.34740/kaggle/dsv/3015684
title: 2021 World Population (updated daily)
DOI: 10.5281/zenodo.5827754
title: Chemical, optical, and oxidizing properties of three kinds of water-soluble organic matter in PM2.5 from biomass and coal combustion in rural areas in Northwest China

description: this data set is about the molecular carbon content, light absorption, infrared spectra, and oxidation activity in PM2.5
DOI: 10.5281/zenodo.5827753
title: Chemical, optical, and oxidizing properties of three kinds of water-soluble organic matter in PM2.5 from biomass and coal combustion in rural areas in Northwest China

description: this data set is about the molecular carbon content, light absorption, infrared spectra, and oxidation activity in PM2.5
DOI: 10.5281/zenodo.5827771
title: Amazona autumnalis SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5827770
title: Amazona autumnalis SPAdes preassembly

description: .
DOI: 10.15468/uvxmf5
title: A New Genus and Species of Pygmy Pipehorse from Taitokerau Northland, Aotearoa New Zealand, with a Redescription of Acentronura Kaup, 1853 and Idiotropiscis Whitley, 1947 (Teleostei, Syngnathidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Short, Graham A., Trnski, Thomas (2021): A New Genus and Species of Pygmy Pipehorse from Taitokerau Northland, Aotearoa New Zealand, with a Redescription of Acentronura Kaup, 1853 and Idiotropiscis Whitley, 1947 (Teleostei, Syngnathidae). Ichthyology & Herpetology 109 (3): 806-835, DOI: 10.1643/i2020136, URL: http://dx.doi.org/10.1643/i2020136
DOI: 10.5281/zenodo.5827812
title: Datasets from INRIM and ULeeds for Round-Robin on DMI measurement from asymmetric bubble domain expansion

description: The datasets includes: magnetic domain acquisitions, Python/Jupyter analysis programs, SQUID and XRR measurements on the RR samples produced at Leeds and Mainz
DOI: 10.5281/zenodo.5827885
title: Ecitophya simulans decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5827884
title: Ecitophya simulans decontaminated FSCR

description: .
DOI: 10.15468/thap8b
title: One new genus and three new species of the Penenirmus-complex (Phthiraptera Ischnocera) from China, with resurrection of Picophilopterus Ansari, 1947

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gustafsson, Daniel R., Adam, Costică, Zou, Fasheng (2022): One new genus and three new species of the Penenirmus-complex (Phthiraptera Ischnocera) from China, with resurrection of Picophilopterus Ansari, 1947. Zootaxa 5087 (3): 401-426, DOI: https://doi.org/10.11646/zootaxa.5087.3.1
DOI: 10.34740/kaggle/dsv/3015845
title: COVID Vaccination in World (updated daily)
DOI: 10.5281/zenodo.5827369
title: Data for ESG Score and Green Stock Overnight Returns

description: The file <code>fivefactor_yearly</code> contains the Fama-French five factors . The file <code>yearly_indicator</code> contains the sample of stocks used in this study.
DOI: 10.5281/zenodo.5827368
title: Data for ESG Score and Green Stock Overnight Returns

description: The file <code>fivefactor_yearly</code> contains the Fama-French five factors . The file <code>yearly_indicator</code> contains the sample of stocks used in this study.
DOI: 10.15468/79chxt
title: Three new species of Cyclocephala (Coleoptera: Scarabaeidae: Dynastinae) from Amazonian Peru and a checklist of Cyclocephala species in Peru

description: This dataset contains the digitized treatments in Plazi based on the original journal article Paz, Fernando, Ratcliffe, Brett C., Figueroa, Luis (2022): Three new species of Cyclocephala (Coleoptera: Scarabaeidae: Dynastinae) from Amazonian Peru and a checklist of Cyclocephala species in Peru. Zootaxa 5087 (3): 427-440, DOI: https://doi.org/10.11646/zootaxa.5087.3.2
DOI: 10.5281/zenodo.5013479
title: Assemblies of the CAMI 2 challenge data sets

description: Assembly submissions, including participants' submissions, of the CAMI 2 challenge data sets. The gold standards can be found either on the CAMI 2 challenge website: https://data.cami-challenge.org/participate or in publisso alongside the data sets: https://repository.publisso.de/resource/frl:6425521 Also see https://www.microbiome-cosi.org/cami
DOI: 10.5281/zenodo.5013478
title: Assemblies of the CAMI 2 challenge data sets

description: Assembly submissions, including participants' submissions, of the CAMI 2 challenge data sets. The gold standards can be found either on the CAMI 2 challenge website: https://data.cami-challenge.org/participate or in publisso alongside the data sets: https://repository.publisso.de/resource/frl:6425521 Also see https://www.microbiome-cosi.org/cami
DOI: 10.5281/zenodo.4492645
title: Example models and queries for Flow Systems Ontology

description: <strong>Example models and queries for Flow Systems Ontology</strong> This repository contains the files used to produce the examples in the article manuscript introducing the Flow Systems Ontology (FSO). This includes both the triples of the example models, and the SPARQL queries used to demonstrate the use cases. The manuscript has been published as "An ontology to support flow system descriptions from design to operation of buildings" in Automation in Construction. For further details, see the included README.md.
DOI: 10.5281/zenodo.4492644
title: Example models and queries for Flow Systems Ontology

description: <strong>Example models and queries for Flow Systems Ontology</strong> This repository contains the files used to produce the examples in the article manuscript introducing the Flow Systems Ontology (FSO). This includes both the triples of the example models, and the SPARQL queries used to demonstrate the use cases. The manuscript has been published as "An ontology to support flow system descriptions from design to operation of buildings" in Automation in Construction. For further details, see the included README.md.
DOI: 10.15468/cbwe9x
title: Diving into the unknown: fourteen new species of haplosclerid sponges (Demospongiae: Haplosclerida) revealed along the Peruvian coast (Southeastern Pacific)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bispo, André, Willenz, Philippe, Hajdu, Eduardo (2022): Diving into the unknown: fourteen new species of haplosclerid sponges (Demospongiae: Haplosclerida) revealed along the Peruvian coast (Southeastern Pacific). Zootaxa 5087 (2): 201-252, DOI: https://doi.org/10.11646/zootaxa.5087.2.1
DOI: 10.5281/zenodo.5827969
title: Pre-parsed reaction rule files from RetroRules (rr02-rp3-nohs)

description: RetroRules (https://retrorules.org) is a database of reaction rules for metabolic pathway discovery and metabolic engineering. Reaction rules are generic descriptions of reactions to be used in retrosynthesis workflows in order to enumerate possible biosynthetic routes connecting target molecules to precursors. The use of such rules is becoming more and more important in the context of synthetic biology applied to de novo pathway discovery and in systems biology to discover underground metabolism due to enzyme promiscuity. Pre-parsed reaction rule files are ready-to-use files that provide all the non-stereo reaction rules for diameter 2 to 16. The present dataset have the following specifications: release: rr02 diameters: 2 to 16 Hs handling: implicit Compatibility: RetroPath RL ready How to cite: Duigou T, du Lac M, Carbonell P, Faulon JL. RetroRules: a database of reaction rules for engineering biology. <em>Nucleic Acids Research</em>, 2019. | doi: 10.1093/nar/gky940 | PMID: 30321422
description: {"references": ["Duigou T, du Lac M, Carbonell P, Faulon JL. RetroRules: a database of reaction rules for engineering biology. Nucleic Acids Research, 2019. | doi: 10.1093/nar/gky940 | PMID: 30321422"]}
DOI: 10.5281/zenodo.5827968
title: Pre-parsed reaction rule files from RetroRules (rr02-rp3-nohs)

description: RetroRules (https://retrorules.org) is a database of reaction rules for metabolic pathway discovery and metabolic engineering. Reaction rules are generic descriptions of reactions to be used in retrosynthesis workflows in order to enumerate possible biosynthetic routes connecting target molecules to precursors. The use of such rules is becoming more and more important in the context of synthetic biology applied to de novo pathway discovery and in systems biology to discover underground metabolism due to enzyme promiscuity. Pre-parsed reaction rule files are ready-to-use files that provide all the non-stereo reaction rules for diameter 2 to 16. The present dataset have the following specifications: release: rr02 diameters: 2 to 16 Hs handling: implicit Compatibility: RetroPath RL ready How to cite: Duigou T, du Lac M, Carbonell P, Faulon JL. RetroRules: a database of reaction rules for engineering biology. <em>Nucleic Acids Research</em>, 2019. | doi: 10.1093/nar/gky940 | PMID: 30321422
description: {"references": ["Duigou T, du Lac M, Carbonell P, Faulon JL. RetroRules: a database of reaction rules for engineering biology. Nucleic Acids Research, 2019. | doi: 10.1093/nar/gky940 | PMID: 30321422"]}
DOI: 10.5281/zenodo.4525025
title: Correlations Images

description: COMMSENV-20-0370B.
DOI: 10.5281/zenodo.4525024
title: Correlations Images

description: COMMSENV-20-0370B.
DOI: 10.25386/genetics.13369457
title: Supplemental Material for Good, 2021

description: Two site haplotype counts for pairs of SNVs in a worldwide sample of the human commensal gut bacterium Eubacterium rectale.
DOI: 10.25386/genetics.13369457.v1
title: Supplemental Material for Good, 2021

description: Two site haplotype counts for pairs of SNVs in a worldwide sample of the human commensal gut bacterium Eubacterium rectale.
DOI: 10.15468/5bcuta
title: Taxonomic study of the genus Tenupalpa Lee et Li, 2021 (Lepidoptera: Gelechiidae Thiotrichinae) from China, with descriptions of fifteen new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lee, Ga-Eun, Li, Houhun (2022): Taxonomic study of the genus Tenupalpa Lee et Li, 2021 (Lepidoptera: Gelechiidae Thiotrichinae) from China, with descriptions of fifteen new species. Zootaxa 5087 (1): 75-111, DOI: https://doi.org/10.11646/zootaxa.5087.1.4
DOI: 10.5281/zenodo.5827427
title: Pre-parsed reaction rule files from RetroRules (rr01-rp2-hs)

description: RetroRules (https://retrorules.org/) is a database of reaction rules for metabolic pathway discovery and metabolic engineering. Reaction rules are generic descriptions of reactions to be used in retrosynthesis workflows in order to enumerate possible biosynthetic routes connecting target molecules to precursors. The use of such rules is becoming more and more important in the context of synthetic biology applied to de novo pathway discovery and in systems biology to discover underground metabolism due to enzyme promiscuity. Pre-parsed reaction rule files are ready-to-use files that provide all the non-stereo reaction rules for diameter 2 to 16. The present dataset have the following specifications: release: rr01 diameters: 2 to 16 Hs handling: explicit Compatibility: RetroPath2.0 ready How to cite: Duigou T, du Lac M, Carbonell P, Faulon JL. RetroRules: a database of reaction rules for engineering biology. <em>Nucleic Acids Research</em>, 2019. | doi: 10.1093/nar/gky940 | PMID: 30321422
description: {"references": ["https://retrorules.org/dl"]}