cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3624278_d9.v1
title: Additional file 17: Table S8. of Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

description: KEGG functions from metagenome data commonly identified in Wilcoxon rank sum test and sparse partial least squares analysis as related to methane yield against their occurrence in Hungate 1000 and other rumen-derived genomes available in the IMG database in June 2015. (XLSX 204Â kb)
DOI: 10.6084/m9.figshare.c.3623384_d5.v1
title: Additional file 5: of CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in neurodevelopment

description: Table S4. Pathway analysis (IPA) of DEGs in NPCs and neurons (only pathways with Benjamini corrected pâ
DOI: 10.6084/m9.figshare.c.3623384_d6.v1
title: Additional file 7: of CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in neurodevelopment

description: Table S6. DEGs associated with ASD or schizophrenia. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3623384_d4.v1
title: Additional file 8: of CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in neurodevelopment

description: Table S7. DEGs from CHD8 +/− or knockdown of TCF4, EHMT1, MBD5, SATB2, NRXN1, or ZNF804A expression (“1” represents differential expression, “0” represents no change) and GO analysis from the STRING (only term with FDR
DOI: 10.6084/m9.figshare.c.3623384_d3.v1
title: Additional file 4: of CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in neurodevelopment

description: Table S3. GO analysis (DAVID) of DEGs in NPCs and neurons (only terms with Benjamini corrected pâ
DOI: 10.6084/m9.figshare.c.3623384_d1.v1
title: Additional file 6: of CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in neurodevelopment

description: Table S5. Human phenotype analysis (Toppgene) of DEGs. (XLSX 153 KB)
DOI: 10.6084/m9.figshare.c.3623363_d2.v1
title: Additional file 1: Table S1. of Multilocus genotypes and broad host-range of Enterocytozoon bieneusi in captive wildlife at zoological gardens in China

description: List of mammals in Chengdu Zoo examined in the present study. Common name, scientific name, number of specimens tested and number of samples positive for Enterocytozoon bieneusi, genotypes of Enterocytozoon bieneusi are provided. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3623363_d1.v1
title: Additional file 2: Table S2. of Multilocus genotypes and broad host-range of Enterocytozoon bieneusi in captive wildlife at zoological gardens in China

description: List of mammals in Bifengxia Zoo examined in the present study. Common name, scientific name, number of specimens tested and number of samples positive for Enterocytozoon bieneusi, genotypes of Enterocytozoon bieneusiÂ  are provided. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3623297_d5.v1
title: Additional file 2: Table S2. of Integrative epigenomic analysis reveals unique epigenetic signatures involved in unipotency of mouse female germline stem cells

description: GO analysis of genes related to FGSC-specific active enhancers. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3623297_d6.v1
title: Additional file 6: Table S6. of Integrative epigenomic analysis reveals unique epigenetic signatures involved in unipotency of mouse female germline stem cells

description: Genes up- or down-regulated in Prmt5 kock-down FGSCs. (XLSX 733 kb)
DOI: 10.6084/m9.figshare.c.3623297_d3.v1
title: Additional file 3: Table S3. of Integrative epigenomic analysis reveals unique epigenetic signatures involved in unipotency of mouse female germline stem cells

description: List of genes with bivalent promoters and histone modification regions (H3K4me3 or H3K27me3) in FGSCs. (XLSX 1417 kb)
DOI: 10.6084/m9.figshare.c.3623297_d4.v1
title: Additional file 5: Table S5. of Integrative epigenomic analysis reveals unique epigenetic signatures involved in unipotency of mouse female germline stem cells

description: List of genes methylated in FGSCs and/or MGSCs. (XLSX 180 kb)
DOI: 10.6084/m9.figshare.c.3623297_d1.v1
title: Additional file 4: Table S4. of Integrative epigenomic analysis reveals unique epigenetic signatures involved in unipotency of mouse female germline stem cells

description: List of genes methylated at promoters or gene bodies. (XLSX 115 kb)
DOI: 10.6084/m9.figshare.c.3622484_d16.v1
title: Additional file 11: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Protein sequences of the ABCG transporters of the eight species. (FA 126Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d15.v1
title: Additional file 12: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Protein sequences of the ABCH transporters of the seven species except H. sapiens. (FA 54Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d14.v1
title: Additional file 8: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Protein sequences of the ABCD transporters of the eight species. (FA 80Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d12.v1
title: Additional file 2: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Protein sequences of the 19 ABC transporter fragments of P. xylostella. (FA 78Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d13.v1
title: Additional file 14: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Log2 RPKM values of 82 PxABCs in larvae of the susceptible strain and two insecticide (chlorpyrifos and fipronil)-resistant strains of P. xylostella. (FA 172Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d10.v1
title: Additional file 3: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Phylogenetic tree and gene structure of ABCs in P. xylostella. The left side of the figure presents the phylogenetic relationship among ABC transporters in P. xylostella and the right, the corresponding gene structures. The green bars represent exons, and black lines represent introns. The digits (0, 1 and 2) on each of the black lines represent three different phases of the introns existed in eukaryotic genes. The length of genes is measured with a scale on the bottom right. Protein sequences used for phylogenetic analysis are provided in the Additional file 1. (FA 30Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d8.v1
title: Additional file 16: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Expression profiles of 18 selected ABC genes in the susceptible strain and two insecticide (chlorpyrifos and fipronil)-resistant strains of P. xylostella as determined by qRT-PCR. X axis: samples; Y axis: relative expression values; 3-rd: third day of the 3rd-instar larvae; 4-th: third day of the 4th-instar larvae; Pupae: third day of the pupa stage; Males: virgin male adults; Females: virgin female adults; SS: susceptible strain; CRS: chlorpyrifos-resistant strains; FRS: fipronil-resistant strain. (FA 5Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d6.v1
title: Additional file 9: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Protein sequences of the ABCE transporters of the eight species. (FA 7Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d5.v1
title: Additional file 4: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Protein sequences of the ABCA transporters of the eight species. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.c.3622490_d2.v1
title: Additional file 2: of MicroRNA expression and gene regulation drive breast cancer progression and metastasis in PyMT mice

description: Supplementary tables. (XLSX 1081 kb)
DOI: 10.6084/m9.figshare.c.3622484_d4.v1
title: Additional file 1: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Protein sequences of the 82 ABC transporters of P. xylostella. (FA 17Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d2.v1
title: Additional file 13: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Log2 RPKM values of 82 PxABCs at different developmental stages and in different tissues of the susceptible P. xylostella. (FA 27Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d3.v1
title: Additional file 15: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Expression profiles of 18 selected ABC genes at different developmental stages of the susceptible P. xylostella as determined by qRT-PCR. X axis: samples; Y axis: relative expression values; E: eggs; 11: the 1st-instar larvae; 21–22: first and second day of the 2nd-instar larvae; 31–32: first and third day of the 3rd-instar larvae; 41–44: each day of the 4th-instar larvae; P1-p4: each day of pupa stage; AM: virgin male adult; AF: virgin female adult; A*M: post-mating male adult; A*F: post-mating female adult. (FA 12 kb)
DOI: 10.6084/m9.figshare.c.3622484_d1.v1
title: Additional file 5: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Protein sequences of the full ABCB transporters of the eight species. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3622376_d17.v1
title: Additional file 16: of Comparative transcript profiling of resistant and susceptible peanut post-harvest seeds in response to aflatoxin production by Aspergillus flavus

description: KEGG pathway enrichment analysis of differentially expressed genes when peanut seeds respond to aflatoxin production by A. flavus. (XLSX 12 kb)
DOI: 10.15468/dl.3ye7k8
title: Occurrence Download

description: A dataset containing 248 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thalictrum foetidum subsp. glabrescens (Takeda) T.Shimizu"
 ]
}

 The dataset includes 248 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037478-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14504814
title: Texts of 22 tragedies with metadata file

description: Texts of 22 early modern English tragedies in TEI format. Includes a metadata file giving details of the early printed versions the texts are based on.
DOI: 10.5281/zenodo.14504815
title: Texts of 22 tragedies with metadata file

description: Texts of 22 early modern English tragedies in TEI format. Includes a metadata file giving details of the early printed versions the texts are based on.
DOI: 10.6084/m9.figshare.c.3620291_d2.v1
title: Additional file 2: Table S2. of A preliminary study of the mechanism of nitrate-stimulated remarkable increase of rifamycin production in Amycolatopsis mediterranei U32 by RNA-seq

description: Transcriptional profiles of genes for secondary metabolisms except for the rifamycin SV biosynthesis in A. mediterranei U32.
DOI: 10.6084/m9.figshare.c.3620291_d1.v1
title: Additional file 1: Table S1. of A preliminary study of the mechanism of nitrate-stimulated remarkable increase of rifamycin production in Amycolatopsis mediterranei U32 by RNA-seq

description: Transcriptional profiles of genes involved in carbon metabolism, nitrogen metabolism and rifamycin SV biosynthesis in A. mediterranei U32.
DOI: 10.6084/m9.figshare.c.3620222_d10.v1
title: Additional file 5: of A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein

description: Excel workbook. Lists of gene ontology terms associated with each domain in Fig.Â 3. (XLSX 910Â kb)
DOI: 10.6084/m9.figshare.c.3620222_d9.v1
title: Additional file 10: Table S2. of A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein

description: Strains and plasmids used in this study. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3620222_d7.v1
title: Additional file 3: of A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein

description: Excel workbook. Lists of genes showing significant regulation in Figs.Â 2 and 3, including the criterion data. (XLS 1602Â kb)
DOI: 10.6084/m9.figshare.c.3619088_d2.v1
title: Additional file 1: Table S1. of Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants

description: Average GC%, size, protein-encoding gene count and density per M. pusilla CCMP1545 chromosome. Finished chromosomes are indicated. Table S2. Ortholog similarity in prasinophytes. The gene fraction is the ortholog count divided by the number of proteins in the smaller set. Table S3. OrthoGroups numbers across the Class II prasinophytes (see also Fig.Â 4) and number of OrthoGroups with &gt;1 protein from the respective taxon in this analysis. Note that the higher redundancy of transcriptome-based proteomes of D. tenuilepis and CCMP2099 is likely due to artefacts of the method used. Table S4. Predicted proteins present in Micromonas and Dolichomastix, but not in Bathycoccus or Ostreococcus. Table S5. Genes encoding proteins in the peptidoglycan biosynthesis pathway identified here in prasinophytes, streptophytes and glaucophytes. Gene IDs from the new annotation generated here as shown in the JGI system (CCMP1545, RCC299, Ostreococcus RCC809), CAMPEP (CCMP2099, D. tenuilepis, N. pyriformis, P. salinarum, G. wittrockiana, see www.iplantcollaborative.org ), Genbank (O. tauri, O. lucimarinus, and B. prasinos) and Phytozome version 11 (all others). tblastn: Gene found using tblastn against the genome (streptophytes) or transcriptome (CCMP2099, D. tenuilepis), no corresponding gene model exists. Table S6. EST support for Viridiplantae peptidoglycan genes (tblastn with predicted peptide, E-value cutoff 10â  15). A maximum of five ESTs are listed for each. Table S7. Signal peptides on Viridiplantae peptidoglycan pathway enzymes found using TargetP. C: Chloroplast; M: Mitochondrion; S: secreted; â  : no signal; n/a: protein was located by tblastn in the genome and no corresponding gene model exists. Table S8. Greencut2 family proteins in prasinophytes. (XLSX 167 kb)
DOI: 10.6084/m9.figshare.c.3619064_d3.v1
title: Additional file 3: of Eye exercises of acupoints: their impact on myopia and visual symptoms in Chinese rural children

description: Dataset. (SAV 53 kb)
DOI: 10.6084/m9.figshare.c.3618572_d7.v1
title: Additional file 7: of Molt-dependent transcriptomic analysis of cement proteins in the barnacle Amphibalanus amphitrite

description: Detailed information about protein identifications from the various secreted samples. (XLSX 117Â kb)
DOI: 10.6084/m9.figshare.c.3618572_d3.v1
title: Additional file 6: of Molt-dependent transcriptomic analysis of cement proteins in the barnacle Amphibalanus amphitrite

description: Table of the 135 differentially expressed transcripts in the pre- and post-molt samples. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.c.3618311_d13.v1
title: Additional file 14: of Seasonality of Plasmodium falciparum transmission: a systematic review

description: Systematic review raw data.
DOI: 10.6084/m9.figshare.c.3618326_d5.v1
title: Additional file 1: of Predicting drug target interactions using meta-path-based semantic network analysis

description: (Cpluspluscodes.zip): it contains the C++ codes to generate adjacent matrix and compute commuting matrix. (ZIP 9294 kb)
DOI: 10.6084/m9.figshare.c.3618326_d3.v1
title: Additional file 5: of Predicting drug target interactions using meta-path-based semantic network analysis

description: (evolving_network_prediction.zip): it contains the predicted results using SLAP and presented meta-path-based semantic network analysis framework. (ZIP 4712 kb)
DOI: 10.6084/m9.figshare.c.3618326_d4.v1
title: Additional file 2: of Predicting drug target interactions using meta-path-based semantic network analysis

description: (Rcodes.zip): it contains the R codes to apply machine learning algorithms on the commuting matrix feature space to construct binary classification model. (ZIP 48844 kb)
DOI: 10.6084/m9.figshare.c.3617780_d1.v1
title: Additional file 1: of Opioid doses required for pain management in lung cancer patients with different cholesterol levels: negative correlation between opioid doses and cholesterol levels

description: A list of current patients’ information. The records of 282 patients were listed after removing primary information. ID was the reference number provided by the authors for easier accession. “Chol level” represented the serum cholesterol level measured and recorded. “Year” represented when the initial diagnosis of cancer was made. “Initial dose”, “stable dose” and “converted dose” represented the initial dose opioid administration, the final dose of opioids used for analysis and the dose when converted to equivalent oxycodone hydrochloride, respectively. The “increased” column, “1” or “0” were used to represented that “stable dose” was higher than “initial dose”. If the patient has one or multiple additional measurement of cholesterol during the first month after opioid administration, the cholesterol level with largest difference from initial cholesterol level was selected, recorded in “Chol level with largest difference” column, and normalized to the initial cholesterol level. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3617726_d1.v1
title: Additional file 1: of Scoliosis epidemiology is not similar all over the world: a study from a scoliosis school screening on Chongming Island (China)

description: The raw data of 172 scoliosis patients. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3617696_d6.v1
title: Additional file 2: of High-throughput development of simple sequence repeat markers for genetic diversity research in Crambe abyssinica

description: The total dataset of the genomic-SSR primer sequence. (XLSX 3479Â kb)
DOI: 10.6084/m9.figshare.c.3617696_d7.v1
title: Additional file 1: of High-throughput development of simple sequence repeat markers for genetic diversity research in Crambe abyssinica

description: The total dataset of the EST-SSR primer sequence. (XLSX 172Â kb)
DOI: 10.6084/m9.figshare.c.3617696_d4.v1
title: Additional file 4: of High-throughput development of simple sequence repeat markers for genetic diversity research in Crambe abyssinica

description: Primers mapped on Brassica oleracea genome (XLSX 174Â kb)
DOI: 10.6084/m9.figshare.c.3617696_d5.v1
title: Additional file 3: of High-throughput development of simple sequence repeat markers for genetic diversity research in Crambe abyssinica

description: Primers mapped on Brassica rapa genome (XLSX 177Â kb)
DOI: 10.6084/m9.figshare.c.3617696_d3.v1
title: Additional file 7: of High-throughput development of simple sequence repeat markers for genetic diversity research in Crambe abyssinica

description: The genetic distances with the coefficient of NEI72 among accessions. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3617696_d1.v1
title: Additional file 6: of High-throughput development of simple sequence repeat markers for genetic diversity research in Crambe abyssinica

description: The 166 primer-pairs validated by PCR. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.c.3617696_d2.v1
title: Additional file 5: of High-throughput development of simple sequence repeat markers for genetic diversity research in Crambe abyssinica

description: Primer mapped on Brassica napus genome (XLSX 101Â kb)
DOI: 10.6084/m9.figshare.c.3617678_d3.v1
title: Additional file 3: Table A3. of Repeat Composition of CenH3-chromatin and H3K9me2-marked heterochromatin in Sugar Beet (Beta vulgaris)

description: Enriched clusters in H3K9me2 ChIP-Seq data. (XLS 19 kb)
DOI: 10.6084/m9.figshare.c.3617678_d2.v1
title: Additional file 2: Table A2. of Repeat Composition of CenH3-chromatin and H3K9me2-marked heterochromatin in Sugar Beet (Beta vulgaris)

description: Enriched clusters in CenH3 ChIP-Seq data. (XLS 12 kb)
DOI: 10.6084/m9.figshare.c.3617678_d1.v1
title: Additional file 1: Table A1. of Repeat Composition of CenH3-chromatin and H3K9me2-marked heterochromatin in Sugar Beet (Beta vulgaris)

description: Genomic reference clusters of Beta vulgaris. (XLS 28 kb)
DOI: 10.6084/m9.figshare.c.3616763_d5.v1
title: Additional file 3: of Whole exome sequencing identifies novel candidate genes that modify chronic obstructive pulmonary disease susceptibility

description: The abundance of gene expression in primary human epithelial cell cultures using RNA-Seq. Expression level (FPKM) of 32,457 transcripts from five nonsmoking donors and the average expression level are shown. (XLSX 4.16 mb)
DOI: 10.6084/m9.figshare.c.3616763_d3.v1
title: Additional file 2: of Whole exome sequencing identifies novel candidate genes that modify chronic obstructive pulmonary disease susceptibility

description: COPD candidate genes prioritized by the Gene Functional Deficit Score-based TTest and FCBF Analysis. Results from Gene Functional Deficit Score-based t test, FCBF analysis, and induced network modules analysis are shown in different tabs. (XLSX 384 kb)
DOI: 10.6084/m9.figshare.c.3616763_d1.v1
title: Additional file 4: of Whole exome sequencing identifies novel candidate genes that modify chronic obstructive pulmonary disease susceptibility

description: siRNA screening in vitro analysis for 81 COPD candidate genes. For the 81 candidate genes, the detailed gene information, selection method, and annotation are shown in the tab "Gene Selection Methods". The siRNA knockdown results in three trials are shown in the tab "siRNA summary". (XLSX 92.6 kb)
DOI: 10.6084/m9.figshare.c.3616667_d13.v1
title: Additional file 5: Table S4. of 
                     De novo comparative transcriptome analysis provides new insights into sucrose induced somatic embryogenesis in camphor tree (Cinnamomum camphora L.)

description: Functional annotation of non-redundant unigenes against KEGG database. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3616667_d10.v1
title: Additional file 2: Table S1. of 
                     De novo comparative transcriptome analysis provides new insights into sucrose induced somatic embryogenesis in camphor tree (Cinnamomum camphora L.)

description: Gene specific primers used in qRT-PCR. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3616667_d9.v1
title: Additional file 6: Table S5. of 
                     De novo comparative transcriptome analysis provides new insights into sucrose induced somatic embryogenesis in camphor tree (Cinnamomum camphora L.)

description: Expression of somatic embryogenesis-related genes in IZE, IZE_Suc and SE_5w in camphor tree based on the results of RNA-Seq. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3616667_d8.v1
title: Additional file 10: Table S7. of 
                     De novo comparative transcriptome analysis provides new insights into sucrose induced somatic embryogenesis in camphor tree (Cinnamomum camphora L.)

description: The top 10 GO terms of up-regulated and down-regulated DEGs in the three comparisons based on biological process. (XLSX 13 kb)