cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.cm84qx
title: Occurrence Download

description: A dataset containing 22446 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clematis alpina (L.) Mill.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 22446 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079254-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvaang
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Lycium chinense",
 "BasisOfRecord is Specimen",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059872-220831081235567/datasets/export for details.
DOI: 10.15468/dl.pxmtme
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Juniperus pinchotii Sudw.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 121 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006727-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.putcvd
title: Occurrence Download

description: A dataset listing the 0 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes",
 "Country is Guam"
 ]
}

 The dataset's 0 records were derived from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239668-200613084148143/datasets/export for details.
DOI: 10.15468/dl.wjrxbt
title: Occurrence Download

description: A dataset containing 134957 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Marine metagenomes Metagenome",
 "TaxonKey is Actinobacteria"
 ]
}

 The dataset includes 134957 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017248-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtpfnd
title: Occurrence Download

description: A dataset containing 6429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cleistogenes serotina (L.) Keng",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6429 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079252-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjf78x
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Benin",
 "TaxonKey is Caesalpinia bonduc (L.) Roxb."
 ]
}

 The dataset's 1 records were derived from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239675-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p2kqyp
title: Occurrence Download

description: A dataset containing 1309 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Morpho achilles (Linnaeus, 1758)"
 ]
}

 The dataset includes 1309 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000767-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.66kczs
title: Occurrence Download

description: A dataset containing 180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clematis lathyrifolia Besser ex Rchb.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 180 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079266-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebg8h7
title: Occurrence Download

description: A dataset containing 11510019 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Portugal"
 ]
}

 The dataset includes 11510019 records from 1461 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239677-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zjdnj
title: Occurrence Download

description: A dataset containing 4646 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The crustaceans collection (IU) of the Muséum national d'Histoire naturelle (MNHN - Paris)",
 "TaxonKey is Pycnogonida"
 ]
}

 The dataset includes 4646 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002933-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14758147
title: Appendix for paper "Leveraging GPT-4 for Vulnerability-Witnessing Unit Test Generation"

description: This is the online appendix for paper "Leveraging GPT-4 for Vulnerability-Witnessing Unit Test Generation".

It contains the framework and the results we achieved.
DOI: 10.5281/zenodo.14758148
title: Appendix for paper "Leveraging GPT-4 for Vulnerability-Witnessing Unit Test Generation"

description: This is the online appendix for paper "Leveraging GPT-4 for Vulnerability-Witnessing Unit Test Generation".

It contains the framework and the results we achieved.
DOI: 10.15468/dl.89abqe
title: Occurrence Download

description: A dataset containing 3149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nacellidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3149 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002934-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nrzv2k
title: Occurrence Download

description: A dataset containing 408 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "Continent is South America",
 "OccurrenceStatus is Present",
 "TaxonKey is Lobivia bridgesii (Salm-Dyck) Schlumpb."
 ]
}

 The dataset includes 408 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002935-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k43uv9
title: Occurrence Download

description: A dataset containing 11425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Casearia sylvestris Sw."
 ]
}

 The dataset includes 11425 records from 379 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002936-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mucb7y
title: Occurrence Download

description: A dataset containing 24875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "IucnRedListCategory is CR",
 "PublishingCountry is Brazil"
 ]
}

 The dataset includes 24875 records from 217 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002937-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.73wupt
title: Occurrence Download

description: A dataset containing 503 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rissoidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 503 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002939-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r39nd8
title: Occurrence Download

description: A dataset containing 61303 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CAN.2_1",
 "TaxonKey is one of (Apidae, Halictidae, Colletidae, Megachilidae, Andrenidae, Melittidae)"
 ]
}

 The dataset includes 61303 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002938-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gve9yp
title: Occurrence Download

description: A dataset containing 24633 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Calidris mauri (Cabanis, 1857)"
 ]
}

 The dataset includes 24633 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002940-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gpzyr
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anatomidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 90 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002942-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.exnpjy
title: Occurrence Download

description: A dataset containing 22496 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carcharodon Smith, 1838"
 ]
}

 The dataset includes 22496 records from 208 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002943-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vvhhh4
title: Occurrence Download

description: A dataset containing 303 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Margaritidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 303 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002944-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xykhb8
title: Occurrence Download

description: A dataset containing 3021 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-206.00949 21.50862,-60.99051 21.50862,-60.99051 79.49138,-206.00949 79.49138,-206.00949 21.50862))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ursus arctos horribilis Ord, 1815"
 ]
}

 The dataset includes 3021 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002945-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2f9zbs
title: Occurrence Download

description: A dataset containing 2040 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Haematoxylum brasiletto H.Karst."
 ]
}

 The dataset includes 2040 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002946-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpz63d
title: Occurrence Download

description: A dataset containing 1534 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pyramidellidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1534 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002947-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k43s39
title: Occurrence Download

description: A dataset containing 2875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "OccurrenceStatus is Present",
 "TaxonKey is Echinocactus platyacanthus Link & Otto"
 ]
}

 The dataset includes 2875 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002948-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.awvb9n
title: Occurrence Download

description: A dataset containing 1573 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fissurellidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1573 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002949-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jkedxa
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aparatrigona Moure, 1951, Camargoia Moure, 1989, Celetrigona Moure, 1950, Cephalotrigona Schwarz, 1940, Dolichotrigona Moure, 1950, Duckeola Moure, 1944, Friesella Moure, 1946, Frieseomelitta Ihering, 1912, Geotrigona Moure, 1943, Lestrimelitta Friese, 1903, Leurotrigona Moure, 1950, Melipona Illiger, 1806, Meliwillea Roubik, Lobo Segura & Camargo, 1997, Mourella Schwarz, 1946, Nannotrigona Cockerell, 1922, Nogueirapis Moure, 1953, Oxytrigona Cockerell, 1917, Parapartamona Schwarz, 1948, Paratrigona Schwarz, 1938, Paratrigonoides Camargo & Roubik, 2005, Partamona Schwarz, 1939, Plebeia Schwarz, 1938, Proplebeia Michener, 1982, Ptilotrigona Moure, 1951, Scaptotrigona Moure, 1942, Scaura Schwarz, 1938, Schwarziana Moure, 1943, Schwarzula Moure, 1946, Tetragona Lepeletier & Audinet-Serville, 1828, Tetragonisca Moure, 1946, Trichotrigona Camargo & Moure, 1983, Trigonisca Moure, 1950, Plectoplebeia Melo, 2016, Trigona Jurine, 1807)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is South America",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002906-250127130748423/datasets/export for details.
DOI: 10.15468/dl.v9a8fp
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acteonidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 189 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002950-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nw8ejs
title: Occurrence Download

description: A dataset containing 370797 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-12-03",
 "EventDate is less than or equal to 2025-01-02",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 370797 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002809-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e2tbnw
title: Occurrence Download

description: A dataset containing 6776 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Naviculaceae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6776 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002951-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25757841.v1
title: GlobalGTDB_ipaMAGs_added.tree.nwk

description: Global genome-based reconstruction using 120 GTDB marker genes & a representative of each family in GTDB release207. 5 high quality genomes from bacterial symbionts of heterotrophic protists were added to the alignment.
DOI: 10.6084/m9.figshare.25757841
title: GlobalGTDB_ipaMAGs_added.tree.nwk

description: Global genome-based reconstruction using 120 GTDB marker genes & a representative of each family in GTDB release207. 5 high quality genomes from bacterial symbionts of heterotrophic protists were added to the alignment.
DOI: 10.25378/janelia.26820265
title: X-ray volume (xray3) registered to FIB-SEM of P7 mouse thymus (jrc_mus-thymus-1)

description: <br><b>Description</b>: X-ray volume (xray3) registered to FIB-SEM of P7 mouse thymus (jrc_mus-thymus-1)<b>X-ray ID</b>: xray3<b>Protocol</b>: After re-embedding in Durcupan, a 3D micro-CT scan of the entire block was performed using an XRadia Versa 510 X-ray microscope (Zeiss Microscopy). The tomogram facilitated precise selection of Regions of Interest (ROIs) and defined tissue boundaries. Multiple scans were conducted using different settings, with 4× and 20× objective lenses for overview and ROI selection, respectively. The sample block was then re-mounted on a 1 mm copper post for improved charge dissipation and trimmed to the ROI using an ultramicrotome. After each trimming step, X-ray tomograms were collected. Finally, a thin conductive layer was applied, consisting of a 10 nm gold layer followed by a 100 nm carbon layer.<b>Contributions</b>: X-ray microCT scans and trimming were performed by Zhiyuan Lu (HHMI/Janelia/EMSR). The sample collection through block trimming was supervised by Zhiheng Yu (HHMI/Janelia/EMSR). Regions of interest were selected by Christopher Bleck (HHMI/Janelia/EMSR), Wei-Ping Li (HHMI/Janelia/EMSR), Zhiyuan Lu, and Aubrey Weigel (HHMI/Janelia/CellMap Project Team). Data curation was handled by Rebecca Vorimo (HHMI/Janelia/CellMap Project Team) and Yurii Zubov (HHMI/Janelia/CellMap Project Team). The rest of the CellMap Project Team contributed to the overall development and review of the project. Aubrey Weigel provided oversight for the general project development.<b>X-ray voxel size (nm)</b>:<b>X-ray data dimensions (µm)</b>:<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-thymus-1/jrc_mus-thymus-1.zarr/recon-1/xray/xray-3/<b>Resulting, registered FIB-SEM volume</b>: https://doi.org/10.25378/janelia.24085287<br><br><b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-thymus-1
DOI: 10.25378/janelia.26820265.v1
title: X-ray volume (xray3) registered to FIB-SEM of P7 mouse thymus (jrc_mus-thymus-1)

description: <br><b>Description</b>: X-ray volume (xray3) registered to FIB-SEM of P7 mouse thymus (jrc_mus-thymus-1)<b>X-ray ID</b>: xray3<b>Protocol</b>: After re-embedding in Durcupan, a 3D micro-CT scan of the entire block was performed using an XRadia Versa 510 X-ray microscope (Zeiss Microscopy). The tomogram facilitated precise selection of Regions of Interest (ROIs) and defined tissue boundaries. Multiple scans were conducted using different settings, with 4× and 20× objective lenses for overview and ROI selection, respectively. The sample block was then re-mounted on a 1 mm copper post for improved charge dissipation and trimmed to the ROI using an ultramicrotome. After each trimming step, X-ray tomograms were collected. Finally, a thin conductive layer was applied, consisting of a 10 nm gold layer followed by a 100 nm carbon layer.<b>Contributions</b>: X-ray microCT scans and trimming were performed by Zhiyuan Lu (HHMI/Janelia/EMSR). The sample collection through block trimming was supervised by Zhiheng Yu (HHMI/Janelia/EMSR). Regions of interest were selected by Christopher Bleck (HHMI/Janelia/EMSR), Wei-Ping Li (HHMI/Janelia/EMSR), Zhiyuan Lu, and Aubrey Weigel (HHMI/Janelia/CellMap Project Team). Data curation was handled by Rebecca Vorimo (HHMI/Janelia/CellMap Project Team) and Yurii Zubov (HHMI/Janelia/CellMap Project Team). The rest of the CellMap Project Team contributed to the overall development and review of the project. Aubrey Weigel provided oversight for the general project development.<b>X-ray voxel size (nm)</b>:<b>X-ray data dimensions (µm)</b>:<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-thymus-1/jrc_mus-thymus-1.zarr/recon-1/xray/xray-3/<b>Resulting, registered FIB-SEM volume</b>: https://doi.org/10.25378/janelia.24085287<br><br><b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-thymus-1