cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/kogyzf
title: Canada Basin Metagenome

description: The Canada Basin is a deep oceanic basin within the Arctic Ocean. To investigate the bacterial diversity in seawater from the Canada Basin, water samples were collected from five stations in the Canada Basin during the 3rd Chinese Arctic Scientific Expedition in 2008. After pyrosequencing with a 454 Life Science GS-FLX sequencer, the V3 region of the 16S rRNA gene sequences were analyzed, the bacterial diversity of sea water from the Canada Basin was generally achieved.
DOI: 10.15468/dl.xbhe65
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Juniperus bermudiana",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 189 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009203-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/5m6mtb
title: Amplicon sequencing of soil fungi detected within the mixed coniferous forest of the western Sierra Nevada, California, USA; inferred from ITS1 amplicon sequencing with ITS1f-ITS2 primers

description: To assess whether prescribed fire and mechanical thinning alter soil fungal diversity, we compared fungal communities in unmanaged forest stands with stands that experienced prior applications of prescribed fire and/or mechanical thinning. We used high-throughput DNA sequencing of the Internal Transcribed Spacer region (ITS1) to quantify the richness and abundance of fungi in 144 soil samples collected from 12 forest stands at the Blodgett Forest Research Station in the western Sierra Nevada, California. Beginning in 2001, each forest stand was randomly assigned to one of four forestry treatments: prescribed fire only, mechanical thinning only, mechanical plus fire, and control. Fire only treatments were applied in 2002, 2009, and 2016. Mechanical only treatments occurred in 2002 and 2017. For the mechanical plus fire treatment, both methods were applied in 2002 and in 2018. Samples for this study were collected in June, 2022.[This dataset was processed using the GBIF Metabarcoding Data Toolkit.]
DOI: 10.15468/j6mu48
title: Soil microbial response to organic disturbances

description: We employed a deep 16S amplicon sequencing approach to evaluate the recovery of the native soil microbiome after multiple disturbances caused by the application of organic vinasse residue, inorganic nitrogen (N) or a combination of both during the sugarcane crop-growing season.
DOI: 10.15468/lbp4jv
title: Eastern Mediterranean Sea Lignin and Xylan enrichments

description: A set of microcosms inoculated with a consortia of microbes from the eastern Mediterranean sea and incubated with lignin and xylan as a sole carbon source in artificial seawater medium. Consortia was investigated for their potential to produce lignin degrading enzymes.
DOI: 10.15468/pwbrjp
title: Sea water microorganisms Raw sequence reads

description: To investigate the microbial diversity at the SEATS station in South China Sea.
DOI: 10.13140/rg.2.2.14116.54400
title: Asian Journal of Education and Social Studies Certificate of Excellence in Reviewing awarded to
DOI: 10.15468/d0l50d
title: Marine metagenome ICM_WBS

description: Pyrosequencing as a paleometagenomical tool offers a window into Holocene plankton, littoral fauna, and terrestrial vegetation in the Black Sea.
DOI: 10.15468/dl.ns4dha
title: Occurrence Download

description: A dataset containing 736293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((13.58328 56.07775, 13.57637 56.11685, 13.55592 56.15441, 13.52272 56.189, 13.47803 56.21928, 13.42358 56.24412, 13.36146 56.26257, 13.29405 56.27392, 13.22395 56.27776, 13.15385 56.27392, 13.08644 56.26257, 13.02432 56.24412, 12.96987 56.21928, 12.92518 56.189, 12.89198 56.15441, 12.87153 56.11685, 12.86462 56.07775, 12.87153 56.03861, 12.89198 56.00093, 12.92518 55.96618, 12.96987 55.93569, 13.02432 55.91066, 13.08644 55.89204, 13.15385 55.88057, 13.22395 55.8767, 13.29405 55.88057, 13.36146 55.89204, 13.42358 55.91066, 13.47803 55.93569, 13.52272 55.96618, 13.55592 56.00093, 13.57637 56.03861, 13.58328 56.07775))",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 736293 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009098-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/sv4kq6
title: Soil fungi from forest and grassland ecosystems across Germany (raw sequence reads 2011)

description: The provided sequences were produced in the frame of the core project "Soil Fungi" of the German Biodiversity Exploratories. In May 2011, soil was taken on 300 study plots across three regions in Germany (south - Schwäbische Alb, central - Hainich-Dün, north - Schorfheide-Chorin). After extracting the DNA with the MoBio PowerSoil extraction kit, the fungal ITS (primers: ITS1f and ITS4) was targeted and amplified. The provided sequences are produced with the Roche 454 pyrosequencer.
DOI: 10.15468/bgup9z
title: Maximising fish detection with eDNA metabarcoding, Browse Island, Australia (2017)

description: Water samples were collected from the intertidal reef of Browse Island; a tropical, remote island in the Timor Sea. Aliquots from a single 20700 ml sample and multiple 2000 ml samples were filtered in various volumes (25 ml to 2000 ml) across two membrane sizes (0.20 µm and 0.45 µm). A fish metabarcoding assay was used to characterise the fish diversity within aliquots. All samples, except one, yielded fish DNA sequences. Two hundred and nine operational taxonomic units (cf. species) representing 48 fish families were identified from the complete collection of DNA contained in all samples, comparable to the 200 fish species detected using conventional surveys at this location.
Methods are decsribed in the cited paper Bessey et al. "Maximizing Fish Detection with eDNA Metabarcoding." Environmental DNA (February 20, 2020). doi:10.1002/edn3.74
Data accessed from the Atlas of Living Australia (ALA) 'Maximising fish detection with eDNA metabarcoding' collection at https://collections.ala.org.au/public/show/dr14581 on 2021-12-01
DOI: 10.15468/dl.t7mk3y
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepidium schinzii",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009204-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/amvjuk
title: Hydrate Ridge, OR - Deep sea cold seep ecosystem Targeted Locus (Loci)

description: The goal of this study was to examine how various sources and scales of heterogeneity within a methane seep ecosystem off the coast of Oregon influenced microbial eukaryote community composition and diversity.
DOI: 10.15468/dl.jffe4y
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepidium schinzii",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009205-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16638150
title: Dataset for 'Impact of light logger and dosimeter placement on wearability and appeal in real-life settings'

description: This repository contains the analysis of a survey on the usability of light logger wearing positions. The data are analyzed in the publication [Impact of light logger and dosimeter placement on wearability and appeal in real-life settings](https://doi.org/10.12688/openreseurope.20985.1) under the DOI: 10.12688/openreseurope.20985.1
description: If you use this dataset, please cite it using the following metadata.
DOI: 10.5281/zenodo.16638151
title: Dataset for 'Impact of light logger and dosimeter placement on wearability and appeal in real-life settings'

description: This repository contains the analysis of a survey on the usability of light logger wearing positions. The data are analyzed in the publication [Impact of light logger and dosimeter placement on wearability and appeal in real-life settings](https://doi.org/10.12688/openreseurope.20985.1) under the DOI: 10.12688/openreseurope.20985.1
description: If you use this dataset, please cite it using the following metadata.
DOI: 10.15468/g8tepg
title: Diet analysis of Pacific Bluefin Tuna larvae

description: Metagenetic analysis on gut contents of Pacific Bluefin Tuna larvae and planktons in environmental water
DOI: 10.15468/e1u0ap
title: Biogeography of subsurface prokaryotic communities along with sediment deposition of sediments

description: 454 pyrosequencing of 16S rRNA gene amplicons were used to investigate the geological distribution of bacteria and archaea along with salinity.
DOI: 10.15468/img23l
title: Microbial communities of methane seeps in shallow, porous sands off Elba

description: The methane cold seeps near Pomonte (Elba) are unique ecosystems situated in very shallow and porous coastal sands. We investigated the influence on hydrodynamics on microbial community structure and function. Understanding these ecosystems is important to estimate their role in carbon cycling and their emission of methane to the atmosphere.
DOI: 10.15468/crjjjw
title: permafrost metagenome Targeted loci environmental

description: Analysis of microbial communities in thawing permafrost taliks of a thermokarst lake.
DOI: 10.5281/zenodo.17178631
title: Actinidia chinensis Bud and Flower Dataset (Portugal, 2024)

description: The Actinidia chinensis Bud and Flower Dataset provides 2,528 JPG files of Actinidia chinensis buds and flowers collected in northern Portugal during the 2024 reproductive season.

The data were collected from five different Actinidia chinensis orchards in northern Portugal, covering age, variety, cultivar, training system, and region variations. Table characterises the four orchards used to acquire images.

 










Orchard









Age (year)









Variety









Cultivar





Training System







Location (lat, long)









City











O1









30









deliciosa









‘Hayward’









Pergola









41°7'35.88‘N, 8°32'55.44’W









Gondomar











O2









15









deliciosa









‘Bo.Erika’









Pergola









41°3'17.75‘N, 8°35'16.99’W









Vila Nova de Gaia











O3









8









deliciosa









‘Hayward’









T-bar









40°36'0.53‘N, 8°32'40.29’W









Aveiro











O4









5









chinensis









‘Dori’









T-bar









40°36'0.54‘N, 8°32'34.61’W









Aveiro







 

The images were collected over eight days to capture the complete sequence of reproductive development. Three operators acquired images using a smartphone, iPhone 15 Pro (SP2) or Xiaomi Redmi Note 12 (SP3), with resolutions ranging from 1080×1080 to 6144×6144 pixels. During acquisition, each operator had to alternate the distances from the vegetative wall and the view angles to ensure comprehensive morphological documentation. Table shows the schedule of the eight image-acquisition sessions, listing the date, orchard, operator, and smartphone model for each.

 










Date









2024-04-17









2024-04-21









2024-04-23









2024-04-25





2024-05-03







2024-05-10









2024-05-23









2024-06-05











Orchard





O1



O3







O1





O3 | O4







O1









O1









O1 | O2









O1











Operator









OP1









OP1









OP3









OP3









OP1









OP1









OP2









OP2











Smartphone









SP2









SP2









SP3









SP2









SP2









SP2









SP3









SP2







Images







237









252









29









139 | 574









238









394









193 | 209









263
DOI: 10.5281/zenodo.17178632
title: Actinidia chinensis Bud and Flower Dataset (Portugal, 2024)

description: The Actinidia chinensis Bud and Flower Dataset provides 2,528 JPG files of Actinidia chinensis buds and flowers collected in northern Portugal during the 2024 reproductive season.

The data were collected from five different Actinidia chinensis orchards in northern Portugal, covering age, variety, cultivar, training system, and region variations. Table characterises the four orchards used to acquire images.

 










Orchard









Age (year)









Variety









Cultivar





Training System







Location (lat, long)









City











O1









30









deliciosa









‘Hayward’









Pergola









41°7'35.88‘N, 8°32'55.44’W









Gondomar











O2









15









deliciosa









‘Bo.Erika’









Pergola









41°3'17.75‘N, 8°35'16.99’W









Vila Nova de Gaia











O3









8









deliciosa









‘Hayward’









T-bar









40°36'0.53‘N, 8°32'40.29’W









Aveiro











O4









5









chinensis









‘Dori’









T-bar









40°36'0.54‘N, 8°32'34.61’W









Aveiro







 

The images were collected over eight days to capture the complete sequence of reproductive development. Three operators acquired images using a smartphone, iPhone 15 Pro (SP2) or Xiaomi Redmi Note 12 (SP3), with resolutions ranging from 1080×1080 to 6144×6144 pixels. During acquisition, each operator had to alternate the distances from the vegetative wall and the view angles to ensure comprehensive morphological documentation. Table shows the schedule of the eight image-acquisition sessions, listing the date, orchard, operator, and smartphone model for each.

 










Date









2024-04-17









2024-04-21









2024-04-23









2024-04-25





2024-05-03







2024-05-10









2024-05-23









2024-06-05











Orchard





O1



O3







O1





O3 | O4







O1









O1









O1 | O2









O1











Operator









OP1









OP1









OP3









OP3









OP1









OP1









OP2









OP2











Smartphone









SP2









SP2









SP3









SP2









SP2









SP2









SP3









SP2







Images







237









252









29









139 | 574









238









394









193 | 209









263
DOI: 10.15468/jj03ja
title: Aquifer sediment nitrate reducing community change

description: Microbial community composition change over the course of a heterotrophic nitrate reducing enrichment. Sediments used in this experiment were collected from a nitrate contaminated shallow aquifer at a depth of 58-61ft from Alda, NE. Illumina sequencing of the V5 hypervariable region of the 16S rRNA gene is used.
DOI: 10.25574/25294
title: Chandra X-ray Observatory ObsId 25294

description: Probing strong radio AGN at the centers of nearby galaxy groups
DOI: 10.15468/2bspcn
title: sediment metagenome Metagenome

description: Benthic communities in the aquatic ecosystem are influenced by both natural and anthropogenic stressors. To understand the ecogenomic responses of sediment communities to the multiple stressors of polluted environments, the bacteria, protistanand metazoan communities in sediments from marine and adjacent riverine areas of North Bohai Sea were characterized by environmental DNA meta-systematics, and their associations with environmental variables were assessed bymultiple statistical approaches. The structures of communities in sediments were shaped by both natural variables and anthropogenic contaminants, including DDTs, PAHs or metals. Particularly, the correlation network of multiple communities was modulated by the concentrationsof Na and DDTs at the family level.
DOI: 10.25574/26927
title: Chandra X-ray Observatory ObsId 26927

description: A first look at two newly discovered MeerKAT minihalos
DOI: 10.15468/ijoaf4
title: marine sediment metagenome Raw sequence reads
DOI: 10.7910/dvn/dbjxtb
title: Replication Data for: Post hoc, propter hoc? Counterfactuals, placebos and spillovers in evaluating a local mobility policy

description: Policy reforms are often unique, in the sense that it is hard to find comparable changes and circumstances that would make it possible to clearly identify their net consequences and thus unambiguously support causality attributions. Without the appropriate counterfactuals, there is no way scholars can avoid the uncertainty of their estimates. However, we should accept the causal complexity that characterizes social science, give up on the idea of a model’s precision, and increase the robustness of our empirical evidence through multiple testing. This is the research strategy that we adopted in evaluating a reform in the mobility policy of the municipality of Milan, in Italy, that cannot be easily compared to other policy changes. We found overall evidence of the direct and indirect effects of the policy reform, but the research design helped us refining some of our original expectations and fine-tuning the underlying mechanism. This methodological research journey uses the proposed case study to advocate for redundancy in the direct and indirect empirical evidence needed to evaluate any policy change.
DOI: 10.15468/e8k0hv
title: Minor impact of ocean acidification to the structure of an Arctic sediment microbial community

description: Effects of ocean acidification on the diversity and structure of Arctic surface sediment bacterial and archaeal community was analysed in detail using 16S rRNA 454 pyrosequencing. Intact sediment cores were collected and exposed to one of five different pCO2 concentrations (380 (present day), 540, 750, 1120 and 3000 µatm) and RNA extracted after a period of 14 days exposure. Measurements of diversity and multivariate similarity indicated very little difference between pCO2 treatments. Only when the highest and lowest pCO2 treatments were compared were significant differences evident, namely increases in the abundance of the Halobacteria and differences to the presence/absence structure of the Planctomycetes. Members of the Planctomycetia also increased with increasing pCO2 concentration, particularly the Planctomyces, Schlesneria, Pirellula, Blastopirellula, Rhodopirellula and the Pir4 lineage, indicating that these groups may be able to take advantage of changing pH or pCO2 conditions. The modest response of the microbial communities associated with these sediments may be due to the low pore-water pH already experienced by sediment microbes or be a result of the high buffering capacity of marine sediments.
DOI: 10.15468/zm1io0
title: Spirulina necromass degradartion in arctic marine sediments

description: Reveal the identity and population dynamics of responders to spirulina and acetate amendments to arctic marine sediments.
DOI: 10.15468/dl.64rnx5
title: Occurrence Download

description: A dataset containing 141 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Moricandia arvensis",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 141 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009209-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/52qtpw
title: Pelagic eukaryotic communities across Fram Strait

description: Water samples were collected in Fram Strait during the Polarstern cruise PS85 (June 6th 2014
 until July 3rd 2014) from eastern Greenland shelf to west coast of Spitsbergen. For assessing eukaryotic
 community composition 2 L of water were filtered using vacuum filtration (at 200 mbar) through
 successive membrane filters of 10 m , 3 m and 0.4 m. The extracted genomic eukaryotic DNA was pulled
 together from the different fractions and the hypervariable V4 (528iF - 964iR) region of the 18S rRNA
 was amplified and sequenced using Illumina MiSeq platform in a 2 300 bp paired-end run.
DOI: 10.15468/dl.dzbnf5
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Moricandia arvensis",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009208-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.65gxsu
title: Occurrence Download

description: A dataset listing the 12 species recorded in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Clerodendrum capitatum"
 ]
}

 The dataset's 12 records were derived from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009189-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.chnghj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Moricandia arvensis",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009210-250920141307145/datasets/export for details.
DOI: 10.6084/m9.figshare.30189643
title: The Impact of Temporal Expectation on Unconscious Inhibitory Processing: A Computational Analysis Using Hierarchical Drift Diffusion Modeling

description: Numerous studies have shown that motor inhibition can be triggered automatically when the cognitive system encounters interfering stimuli, even a suspicious stimulus in the absence of perceptual awareness (e.g., the negative compatibility effect). This study investigated the effect of temporal expectation, a top-down active preparation for future events, on unconscious inhibitory processing both in the local expectation context on a trial-by-trial basis (Experiment 1) and in the global expectation context on a block-wise basis (Experiment 2). Modeling of the behavioral data using a drift-diffusion model showed that temporal expectation can accelerate the evidence accumulation and improve response caution, regardless of context. Importantly, the acceleration is lower when the target is consistent with the suspicious response tendency induced by the subliminal prime than when the target is inconsistent with that, which is significantly correlated with the behavioral RTs (i.e., the compatibility effect). The results provide evidence for a framework in which temporal expectation enhances inhibitory control of unconscious processes. The mechanism is likely to be that temporal expectation enhances the activations afforded by subliminal stimuli and the strength of cognitive monitoring, so that the cognitive system suppresses these suspicious activations more strongly, preventing them from escaping and interfering with subsequent processing.