cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3985677
title: Tree Data Set Fall 2016, Adult and Sapling Species of Tree

description: This data set was taken in the fall of 2016 in the haverhill forest. We chose a single species of tree in this forest and then walked in a completely random direction on a transect. Here we recorded the data of the adult tree, we measured the circumference of the adult tree taken at breast height in cm, this is also known as cbh. The distance to the closest sapling of this particular species was the recorded and the cbh of the sapling was also recorded in cm. This was done a total of ten times. Afterwards the dbh of the sapling and the adult species was calculated. dbh is the diameter of the species which can be calculated by taking the circumference or cbh and divided by pi. The percentage of canopy coverage of the adult species.
DOI: 10.7910/dvn/v1rjpf/le0lbf
title: snk20151114_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3985677.v2
title: Tree Data Set Fall 2016, Adult and Sapling Species of Tree

description: This data set was taken in the fall of 2016 in the haverhill forest. We chose a single species of tree in this forest and then walked in a completely random direction on a transect. Here we recorded the data of the adult tree, we measured the circumference of the adult tree taken at breast height in cm, this is also known as cbh. The distance to the closest sapling of this particular species was the recorded and the cbh of the sapling was also recorded in cm. This was done a total of ten times. Afterwards the dbh of the sapling and the adult species was calculated. dbh is the diameter of the species which can be calculated by taking the circumference or cbh and divided by pi. The percentage of canopy coverage of the adult species.
DOI: 10.6084/m9.figshare.3985686.v1
title: Woodlot data set 4

description: The data collected was on one species of tree, the white pine tree. To collect this data one transect was randomly chosen off of a path in the woodlot on NECC Haverhill campus. This transect was followed and as adult white pine trees were located the data was collected on the cbh, canopy cover, and distance to nearest sapling. The cbh and canopy cover data was also collected for each sapling. This was repeated until ten pairs were found.
DOI: 10.7910/dvn/v1rjpf/iddpqn
title: snk20160421_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3985677.v1
title: Tree Data Set Fall 2016, Nearest Neighbor

description: This data set was taken in the fall of 2016 in the haverhill forest. We chose a single species of tree in this forest and then walked in a completely random direction on a transect. Here we recorded the data of the adult tree, we measured the circumference of the adult tree taken at breast height in cm, this is also known as cbh. The distance to the closest sapling of this particular species was the recorded and the cbh of the sapling was also recorded in cm. This was done a total of ten times. Afterwards the dbh of the sapling and the adult species was calculated. dbh is the diameter of the species which can be calculated by taking the circumference or cbh and divided by pi. The percentage of canopy coverage of the adult species.
DOI: 10.6084/m9.figshare.3985671
title: Tree Data Set Fall 2016, Nearest Neighbor

description: <br>This is the raw data that was recorded in the haverhill forest in the fall of 2016. We randomly began walking in a certain direction that we then called our transect. Along the transect, whenever we came across a tree, we deciphered the species of tree, measure the cbh (circumference at breast height) in cm. We then measured the distance to the closest neighboring tree and this trees cbh in cm. We then recorded the health of the tree found on the transect based on a scale between 0-2. Afterwards we calculated the dbh of both the tree found on the transect and it's neighboring tree. The dbh is the diameter of the tree taken at breast height.
DOI: 10.7910/dvn/v1rjpf/oh1ylc
title: snk20160403_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3985668
title: Woodlot data set 3

description: This data includes raw and meta-data for the woodlot data set 3 collected. Data was collected on a transect going right off the trail in the woodlot on NECC Haverhill Campus. The transect was 30 degrees Northeast off the trail. While walking along the transect data was collected for each adult tree. The distance to the next tree along the transect was collected. The cbh and the condition of each tree was also collected. The cbh was later used to calculate the dbh in the data.
DOI: 10.6084/m9.figshare.3985671.v2
title: Tree Data Set Fall 2016, Nearest Neighbor

description: <br>This is the raw data that was recorded in the haverhill forest in the fall of 2016. We randomly began walking in a certain direction that we then called our transect. Along the transect, whenever we came across a tree, we deciphered the species of tree, measure the cbh (circumference at breast height) in cm. We then measured the distance to the closest neighboring tree and this trees cbh in cm. We then recorded the health of the tree found on the transect based on a scale between 0-2. Afterwards we calculated the dbh of both the tree found on the transect and it's neighboring tree. The dbh is the diameter of the tree taken at breast height.
DOI: 10.7910/dvn/v1rjpf/csfopx
title: snk20161027_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3985668.v1
title: Woodlot data set 3

description: This data includes raw and meta-data for the woodlot data set 3 collected. Data was collected on a transect going right off the trail in the woodlot on NECC Haverhill Campus. The transect was 30 degrees Northeast off the trail. While walking along the transect data was collected for each adult tree. The distance to the next tree along the transect was collected. The cbh and the condition of each tree was also collected. The cbh was later used to calculate the dbh in the data.
DOI: 10.6084/m9.figshare.3985671.v1
title: Tree Data Set Fall 2016

description: <br>This is the raw data that was recorded in the haverhill forest in the fall of 2016. We randomly began walking in a certain direction that we then called our transect. Along the transect, whenever we came across a tree, we deciphered the species of tree, measure the cbh (circumference at breast height) in cm. We then measured the distance to the closest neighboring tree and this trees cbh in cm. We then recorded the health of the tree found on the transect based on a scale between 0-2. Afterwards we calculated the dbh of both the tree found on the transect and it's neighboring tree. The dbh is the diameter of the tree taken at breast height.
DOI: 10.7910/dvn/v1rjpf/qoraeh
title: snk20150124_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3985635
title: Woodlot Data Set 4

description: Data on adult red maple trees and the nearest sapling were recorded in a woodlot near the Northern Essex Community College campus. When on a trail in the forest we walked along the trail and recorded the first red maple trees we saw and found the closest saplings. We decided which trees were adult by estimating those that were two and a half times our height. We decided the tree species using a tree guide that provided images of the tree's leaves. We mostly determined species by looking at the leaves.
DOI: 10.6084/m9.figshare.3985635.v1
title: Woodlot Data Set 4

description: Data on adult red maple trees and the nearest sapling were recorded in a woodlot near the Northern Essex Community College campus. When on a trail in the forest we walked along the trail and recorded the first red maple trees we saw and found the closest saplings. We decided which trees were adult by estimating those that were two and a half times our height. We decided the tree species using a tree guide that provided images of the tree's leaves. We mostly determined species by looking at the leaves.
DOI: 10.7910/dvn/v1rjpf/hlnqdi
title: snk20150706_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3985587
title: Data_Cerebellar_Inpsired_Adaptive_Control_for_Nonlinear_Artificial_Muscle from Cerebellar inspired algorithm for adaptive control of nonlinear dielectric elastomer based artificial muscle

description: Electroactive polymer actuators are important for soft robotics, but can be difficult to control because of compliance, creep, and nonlinearities. Since biological control mechanisms have evolved to deal with such problems, we investigated whether a control scheme based on the cerebellum would be useful for controlling a nonlinear dielectric elastomer actuator, a class of artificial muscle. The cerebellum was represented by the adaptive filter model, and acted in parallel with a brainstem, an approximate inverse plant model. The recurrent connections between the two allowed for direct use of sensory error to adjust motor commands. Accurate tracking of a displacement command in the actuator's nonlinear range was achieved by either semi-linear basis functions in the cerebellar model, or semi-linear functions in the brainstem corresponding to recruitment in biological muscle. In addition, allowing transfer of training between cerebellum and brainstem as has been observed in the vestibulo-ocular reflex prevented the steady increase in cerebellar output otherwise required to deal with creep. The extensibility and relative simplicity of the cerebellar-based adaptive-inverse control scheme suggests it is a plausible candidate for controlling this type of actuator. Moreover, its performance highlights important features of biological control, particularly nonlinear basis functions, recruitment, and transfer of training.
DOI: 10.7910/dvn/v1rjpf/myerip
title: snk20150107_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3985587.v1
title: Data_Cerebellar_Inpsired_Adaptive_Control_for_Nonlinear_Artificial_Muscle from Cerebellar inspired algorithm for adaptive control of nonlinear dielectric elastomer based artificial muscle

description: Electroactive polymer actuators are important for soft robotics, but can be difficult to control because of compliance, creep, and nonlinearities. Since biological control mechanisms have evolved to deal with such problems, we investigated whether a control scheme based on the cerebellum would be useful for controlling a nonlinear dielectric elastomer actuator, a class of artificial muscle. The cerebellum was represented by the adaptive filter model, and acted in parallel with a brainstem, an approximate inverse plant model. The recurrent connections between the two allowed for direct use of sensory error to adjust motor commands. Accurate tracking of a displacement command in the actuator's nonlinear range was achieved by either semi-linear basis functions in the cerebellar model, or semi-linear functions in the brainstem corresponding to recruitment in biological muscle. In addition, allowing transfer of training between cerebellum and brainstem as has been observed in the vestibulo-ocular reflex prevented the steady increase in cerebellar output otherwise required to deal with creep. The extensibility and relative simplicity of the cerebellar-based adaptive-inverse control scheme suggests it is a plausible candidate for controlling this type of actuator. Moreover, its performance highlights important features of biological control, particularly nonlinear basis functions, recruitment, and transfer of training.
DOI: 10.7910/dvn/v1rjpf/eijh9n
title: snk20160110_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/4hkgum
title: snk20160705_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/yqrrvk
title: snk20161019_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3985569
title: Grassland Data Set 1

description: Collected data on campus at Northern Essex Community College in a grassland. Used a quadrat to sample the overall grassland. Estimated what percentage of the quadrat was covered by each species. If there were more than one species in a quadrat, each was recorded.
DOI: 10.6084/m9.figshare.3985560
title: Effect of commercial prebiotic on gastrointestinal microbial population and growth performance of broilers

description: Raw data files and mapping file for 'Effect of commercial prebiotic on gastrointestinal microbial population and growth performance of broilers'.
DOI: 10.7910/dvn/v1rjpf/cwnheq
title: snk20150120_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3985554
title: Woodlot Data Set 3

description: Collected data on a transcript in the nearby woodlot close to the Northern Essex Community College campus. Randomly, a spot on a trail was picked as the starting point. From that point, we picked an ideal compass heading to follow for our transect. On the transect we recorded the trees that fell on it and also it's nearest neighbor. We recorded the circumference of the tree, species, health, and the distance to the nearest neighbor and what species it was.
DOI: 10.6084/m9.figshare.3985554.v1
title: Woodlot Data Set 3

description: Collected data on a transcript in the nearby woodlot close to the Northern Essex Community College campus. Randomly, a spot on a trail was picked as the starting point. From that point, we picked an ideal compass heading to follow for our transect. On the transect we recorded the trees that fell on it and also it's nearest neighbor. We recorded the circumference of the tree, species, health, and the distance to the nearest neighbor and what species it was.
DOI: 10.6084/m9.figshare.3985560.v1
title: Effect of commercial prebiotic on gastrointestinal microbial population and growth performance of broilers

description: Raw data files and mapping file for 'Effect of commercial prebiotic on gastrointestinal microbial population and growth performance of broilers'.
DOI: 10.7910/dvn/v1rjpf/df3tmr
title: snk20150218_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3985530
title: Quadrat

description: With randomly placed quadrat, I collected the data about the total abundance of plants, total number of different plants species, total cover of vegetation within plots, and total cover of grass.
DOI: 10.6084/m9.figshare.3985551
title: Grasslands Data Set 1

description: At the starting point (0,0) of a given grasslands area, I randomly generated two sets of numbers per quadrant using google sheets and a random number generating formula. These points were capped out at 75 steps, the max distance I could walk along the x or y axis. Once the numbers were generated, I visited each quadrant and used the square quadrant tool to surround an area's plant life. I then estimated the total amount of stems per plant of that area(each grass, each wheat grass etc) and recorded that data. The exact data was species, the number of those individual species, the total amount of cover that that plant species takes up in the quadrant, and if the plant was a grass or not.
DOI: 10.7910/dvn/v1rjpf/aozal2
title: snk20150720_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3985551.v1
title: Grasslands Data Set 1

description: At the starting point (0,0) of a given grasslands area, I randomly generated two sets of numbers per quadrant using google sheets and a random number generating formula. These points were capped out at 75 steps, the max distance I could walk along the x or y axis. Once the numbers were generated, I visited each quadrant and used the square quadrant tool to surround an area's plant life. I then estimated the total amount of stems per plant of that area(each grass, each wheat grass etc) and recorded that data. The exact data was species, the number of those individual species, the total amount of cover that that plant species takes up in the quadrant, and if the plant was a grass or not.
DOI: 10.6084/m9.figshare.3985512
title: Table S2 from Snake fungal disease: an emerging threat to wild snakes

description: Fungal operational taxonomic units (OTUs) recovered from the skin of snakes. Each unique internal transcribed spacer (ITS) region DNA sequence variant (i.e., 100% identity) was assigned a numerical code and a presumptive taxon identification. The NWHC case number (see table S1) of the host(s) from which each variant was recovered is specified. A representative DNA sequence for each variant has been deposited in GenBank; bolded case numbers depict the snakes from which these deposited fungal DNA sequences originated. The assignment of each ITS variant to an OTU based on cut-offs of 99.5%, 99%, 98%, and 97% sequence identities is shown, with each OTU given an alpha-numeric code
DOI: 10.6084/m9.figshare.3985509
title: Table S4 from Snake fungal disease: an emerging threat to wild snakes

description: Additional samples analyzed by fungal culture to assess the known host range and geographic distribution of Ophidiomyces. Location data is displayed only to the county level due to concerns with disclosing specific locations of rare or sensitive snake populations. The type of growth medium upon which the fungus culture was performed is listed in the last column (DTM = dermatophyte test medium; IMA = inhibitory mold agar; PFA = potato flake agar; SD = Sabouraud's dextrose agar)
DOI: 10.7910/dvn/v1rjpf/wfd0xp
title: snk20161125_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3985509.v1
title: Table S4 from Snake fungal disease: an emerging threat to wild snakes

description: Additional samples analyzed by fungal culture to assess the known host range and geographic distribution of Ophidiomyces. Location data is displayed only to the county level due to concerns with disclosing specific locations of rare or sensitive snake populations. The type of growth medium upon which the fungus culture was performed is listed in the last column (DTM = dermatophyte test medium; IMA = inhibitory mold agar; PFA = potato flake agar; SD = Sabouraud's dextrose agar)
DOI: 10.6084/m9.figshare.3985530.v1
title: Quadrat.xlsx

description: With randomly placed quadrat, I collected the data about the total abundance of plants, total number of different plants species, total cover of vegetation within plots, and total cover of grass.
DOI: 10.7910/dvn/v1rjpf/qcx1eu
title: snk20160319_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3985506
title: Presence/absence polymorphisms from Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus <i>Cryptococcus gattii</i>

description: Presence/absence polymorphisms
DOI: 10.6084/m9.figshare.3985530.v3
title: Quadrat

description: With randomly placed quadrat, I collected the data about the total abundance of plants, total number of different plants species, total cover of vegetation within plots, and total cover of grass.
DOI: 10.7910/dvn/v1rjpf/a96pet
title: snk20160625_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3985506.v1
title: Presence/absence polymorphisms from Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus <i>Cryptococcus gattii</i>

description: Presence/absence polymorphisms
DOI: 10.6084/m9.figshare.3985530.v2
title: Quadrat.xlsx

description: With randomly placed quadrat, I collected the data about the total abundance of plants, total number of different plants species, total cover of vegetation within plots, and total cover of grass.
DOI: 10.6084/m9.figshare.3985503
title: Table S3 from Snake fungal disease: an emerging threat to wild snakes

description: Prevalence of dermatitis in snakes post-emergence from hibernation. Each site surveyed was given a unique code; location data is displayed only to the county level due to concerns with disclosing specific locations of rare or sensitive snake populations. The US Geological Survey - National Wildlife Health Center (NWHC) case numbers for some snakes are cross-listed in Tables S1. Presence of clinical signs of dermatitis was noted, and biopsies were collected from a subset of snakes with lesions. Results of Ophidiomyces culture and histopathology analyses are listed. An asterisk (*) indicates samples that were culture-negative for Ophidiomyces but that tested positive for the fungus by PCR. Snakes that had microscopic lesions consistent with snake fungal disease were considered positive by histopathology; samples that were not of sufficient size or quality for histopatholoic interpretation are listed as "unsuitable". NA = not applicable
DOI: 10.7910/dvn/v1rjpf/nyrygt
title: snk20160925_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3985500
title: Summary of phenotypic analysis of Cryptococcus gattii strains. from Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus <i>Cryptococcus gattii</i>

description: Columns show the average intracellular proliferation rates (IPR) with standard error, percent of yeast with tubular mitochondria, average percent of C. gattii phagocytosis by macrophages, percent of cells that were expelled without being destroyed ('vomocytosis') and the percent of macrophage depth
DOI: 10.6084/m9.figshare.3985503.v1
title: Table S3 from Snake fungal disease: an emerging threat to wild snakes

description: Prevalence of dermatitis in snakes post-emergence from hibernation. Each site surveyed was given a unique code; location data is displayed only to the county level due to concerns with disclosing specific locations of rare or sensitive snake populations. The US Geological Survey - National Wildlife Health Center (NWHC) case numbers for some snakes are cross-listed in Tables S1. Presence of clinical signs of dermatitis was noted, and biopsies were collected from a subset of snakes with lesions. Results of Ophidiomyces culture and histopathology analyses are listed. An asterisk (*) indicates samples that were culture-negative for Ophidiomyces but that tested positive for the fungus by PCR. Snakes that had microscopic lesions consistent with snake fungal disease were considered positive by histopathology; samples that were not of sufficient size or quality for histopatholoic interpretation are listed as "unsuitable". NA = not applicable
DOI: 10.6084/m9.figshare.3985497
title: Table S1 from Snake fungal disease: an emerging threat to wild snakes

description: Samples used to determine the types of fungi associated with dermatitis in wild snakes. Location data are displayed only to the county (or sometimes state) level due to concerns with disclosing specific locations of rare or sensitive snake populations. Fungal infection was assessed by examining histologic sections of skin lesions. The number of gross lesions consistent with dermatitis were categorized as "none" (no gross skin lesions observed), "single" (one lesion), "multiple" (more than one discrete lesion), or "not assessed" (no information was available on the number of skin lesions present). The type of fungal growth medium upon which samples were cultured is listed as "DTM" (dermatophyte test medium) or "SD" (Sabouraud dextrose medium containing chloramphenicol and gentamycin). The number of unique internal transcribed spacer region DNA sequences identified per snake (or operational taxonomic units [OTUs] at 100% sequence identity) is listed. Samples originating from snakes cited in previous literature are specified
DOI: 10.6084/m9.figshare.3985500.v1
title: Summary of phenotypic analysis of Cryptococcus gattii strains. from Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus <i>Cryptococcus gattii</i>

description: Columns show the average intracellular proliferation rates (IPR) with standard error, percent of yeast with tubular mitochondria, average percent of C. gattii phagocytosis by macrophages, percent of cells that were expelled without being destroyed ('vomocytosis') and the percent of macrophage depth
DOI: 10.7910/dvn/v1rjpf/lzwcga
title: snk20150815_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3985494
title: Genetic differences from Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus <i>Cryptococcus gattii</i>

description: All genetic differences identified between VGIIc EJB52 and VGIIc EJB18