cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/nnjxdy
title: Replication Data for: Spatial Tools for Case Selection: Using LISA Statistics to Design Mixed-Methods Research

description: Mixed-methods designs, especially those in which case selection is regression-based, have become popular across the social sciences. In this paper, we highlight why tools from spatial analysis—which have largely been overlooked in the mixed-methods literature—can be used for case selection and be particularly fruitful for theory development. We discuss two tools for integrating quantitative and qualitative analysis: (1) spatial autocorrelation in the outcome of interest; and (2) spatial autocorrelation in the residuals of a regression model. The case selection strategies presented here enable scholars to systematically use geography to learn more about their data and select cases that help identify scope conditions, evaluate the appropriate unit or level of analysis, examine causal mechanisms, and uncover previously omitted variables.
DOI: 10.7910/dvn/nohdm7
title: Replication data for: "Equilibrium Effects of Health Care Price Information"

description: Brown, Zach Y., (2019) "Equilibrium Effects of Health Care Price Information." Review of Economics and Statistics 101:4, 699-712.
DOI: 10.15468/dl.y6h523
title: Occurrence Download

description: A dataset containing 13108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chroicocephalus ridibundus"
 ]
}

 The dataset includes 13108 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027427-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/4ngrwr
title: RNAseq data on DROPS Dent panel

description: Clean and preteated adjusted means and heritabilities of the log2-cpm transformed 3'RNAseq dataset of the Dent DROPS panel. The treatment of the raw data (alignement, read counts, filters, pretreatment, normalization, log2-cpm transformation, spatial effect corrections) is explained in detail in Ali et al. (2024, https://doi.org/10.1007/s00122-024-04679-w)
DOI: 10.5281/zenodo.14743302
title: Class Incremental Learning for Algorithm Selection

description: Online Bin-packing and BBOB feature analysis dataset for algorithm selection. Code will be available if accepted.
DOI: 10.5281/zenodo.14234472
title: Supplementary material to: Russian verbal aspect and the activation of event knowledge: Processing typical and atypical location adverbials in perfective and imperfective sentences

description: Supplementary material for a self-paced reading experiment:



Material: contains the verbal stimuli (experimental and filler sentences)

raw_data.zip: E-Prime output for all 50 participants (tab-separated txt-files)

spr_aspect_respinf.txt: Basic information on the participants; tab-separated txt-file

spr_aspect_preprocessing_subm2_fin.R: data preprocessing and calculation of correct responses per speaker in R; R scriptInput: - Files from the "raw_data"-folder- spr_aspect_respinf.txtOutput: - spr_aspect_respinf_corr_resp.txt: same as spr_aspect_respinf.txt + number of correct responses per participant; tab-separated txt-file- spr_aspect_all.txt: relevant data from all participants in one file; tab-separated txt-file- spr_aspect_all_without-outlier.txt: same as spr_aspect_all.txt, but outliers set to NA; tab-separated txt-file

spr_aspect_figures-stats_subm2_fin.R: plots figures and calculates statistics (descriptive statistics and GLMM) in R, R scriptInput: - spr_aspect_all_without-outlier.txtOutput:- spr_aspect_avg.txt: Mean RT and SD per condition; tab-separated txt-file- Figures
DOI: 10.5281/zenodo.14234473
title: Supplementary material to: Russian verbal aspect and the activation of event knowledge: Processing typical and atypical location adverbials in perfective and imperfective sentences

description: Supplementary material for a self-paced reading experiment:



Material: contains the verbal stimuli (experimental and filler sentences)

raw_data.zip: E-Prime output for all 50 participants (tab-separated txt-files)

spr_aspect_respinf.txt: Basic information on the participants; tab-separated txt-file

spr_aspect_preprocessing.R: data preprocessing and calculation of correct responses per speaker in R; R scriptInput: - Files from the "raw_data"-folder- spr_aspect_respinf.txtOutput: - spr_aspect_respinf_corr_resp.txt: same as spr_aspect_respinf.txt + number of correct responses per participant; tab-separated txt-file- spr_aspect_all.txt: relevant data from all participants in one file; tab-separated txt-file- spr_aspect_all_without-outlier.txt: same as spr_aspect_all.txt, but outliers set to NA; tab-separated txt-file

spr_aspect_figures-stats.R: plots figures and calculates statistics (descriptive statistics and GLMM) in R, R scriptInput: - spr_aspect_all_without-outlier.txtOutput:spr_aspect_avg.txt: Mean RT and SD per condition; tab-separated txt-file
DOI: 10.5281/zenodo.15599688
title: Supplementary material to: Russian verbal aspect and the activation of event knowledge: Processing typical and atypical location adverbials in perfective and imperfective sentences

description: Supplementary material for a self-paced reading experiment:



Material: contains the verbal stimuli (experimental and filler sentences)

raw_data.zip: E-Prime output for all 50 participants (tab-separated txt-files)

spr_aspect_respinf.txt: Basic information on the participants; tab-separated txt-file

spr_aspect_preprocessing_subm2_fin.R: data preprocessing and calculation of correct responses per speaker in R; R scriptInput: - Files from the "raw_data"-folder- spr_aspect_respinf.txtOutput: - spr_aspect_respinf_corr_resp.txt: same as spr_aspect_respinf.txt + number of correct responses per participant; tab-separated txt-file- spr_aspect_all.txt: relevant data from all participants in one file; tab-separated txt-file- spr_aspect_all_without-outlier.txt: same as spr_aspect_all.txt, but outliers set to NA; tab-separated txt-file

spr_aspect_figures-stats_subm2_fin.R: plots figures and calculates statistics (descriptive statistics and GLMM) in R, R scriptInput: - spr_aspect_all_without-outlier.txtOutput:- spr_aspect_avg.txt: Mean RT and SD per condition; tab-separated txt-file- Figures
DOI: 10.15468/dl.x6hmxy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudocrenilabrus philander (Weber, 1897)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -23.2724,25.1306 -24.0715,25.5395 -24.0715,25.5395 -23.2724))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021832-250525065834625/datasets/export for details.
DOI: 10.5061/dryad.3fb861d0
title: Data from: Do urology journals enforce trial registration? A cross-sectional study of published trials

description: OBJECTIVES: Trial registration can increase scientific transparency, but
 its implementation in specialty fields such as urology is unclear. We
 aimed to assess the endorsement of trial registration in the author
 instructions of urology-related journals and to assess whether randomized
 controlled trials (RCTs) in the field were effectively registered. DESIGN:
 Cross-sectional study of published trials. SETTING: We first assessed the
 author instructions of urology-related journals indexed in ‘Journal
 Citation Reports 2009’ (12/2010). Second, we divided the results into two
 groups of five journals each, all with high impact factors either
 requiring or not mentioning trial registration as a precondition for
 publication. We then performed a MEDLINE search to identify RCTs published
 in these 10 journals in 2009 (01/2011) and searched the clinical trials
 meta-search interface of the World Health Organization (ICTRP) for RCTs
 without information about registration (01–03/2011). Two authors
 independently assessed information regarding editorial advice about trial
 registration and identified the RCTs. RESULTS: Of 55 journals included, 26
 (47.3%) contained some editorial advice about trial registration. Journals
 with high impact factors were more likely to mention trial registration
 directly (p=0.015). Of 106 RCTs published in 2009, 63 were registered
 (59.4%) with a tendency to an increase after 2005 (83.3%, p=0.035). 71.4%
 (30/42) of the RCTs that were published in journals mentioning and
 requiring registration, and 51.6% (33/64) of the RCTs that were published
 in journals that did not mention trial registration directly were
 registered. This difference was statistically significant (p=0.04).
 CONCLUSION: A statement of trial registration in author instructions
 resulted in a higher proportion of registered RCTs. Journals with high
 impact factors were more likely to mention trial registration. We suggest,
 though, that ensuring trial registration is not the responsibility only of
 the editors. Medical scientists should realize that trial registration is
 necessary to contribute to transparency in research.
description: trial registration_part
 1_061111dataset for endorsement
 of trial registration in journal author instructions in relevant urology
 journalsResults_trial
 registration_part 1_061111results of endorsement
 of trial registration in journal author instructions in relevant urology
 journalsAnalyseTrialRegistrationstatistical code for endorsement of trial registration in journal author instructions in relevant urology journalstrial registration_part 2_061111dataset of RCTs published in journals mentioning and requiring or not mentioning trial registration in their author instructionsResults_trial registration_part 2_061111Results of RCTs published in journals mentioning and requiring or not mentioning trial registration in their author instructions
DOI: 10.5061/dryad.708gr
title: Data from: Towards robust evolutionary inference with integral projection models

description: Integral projection models (IPMs) are extremely flexible tools for
 ecological and evolutionary inference. IPMs track the distribution of
 phenotype in populations through time, using functions describing
 phenotype-dependent development, inheritance, survival and fecundity. For
 evolutionary inference, two important features of any model are the
 ability to (i) characterize relationships among traits (including values
 of the same traits across ages) within individuals, and (ii) characterize
 similarity between individuals and their descendants. In IPM analyses, the
 former depends on regressions of observed trait values at each age on
 values at the previous age (development functions), and the latter on
 regressions of offspring values at birth on parent values as adults
 (inheritance functions). We show analytically that development functions,
 characterized this way, will typically underestimate covariances of trait
 values across ages, due to compounding of regression to the mean across
 projection steps. Similarly, we show that inheritance, characterized this
 way, is inconsistent with a modern understanding of inheritance, and
 underestimates the degree to which relatives are phenotypically similar.
 Additionally, we show that the use of a constant biometric inheritance
 function, particularly with a constant intercept, is incompatible with
 evolution. Consequently, current implementations of IPMs will predict
 little or no phenotypic evolution, purely as artefacts of their
 construction. We present alternative approaches to constructing
 development and inheritance functions, based on a quantitative genetic
 approach, and show analytically and through an empirical example on a
 population of bighorn sheep how they can potentially recover patterns that
 are critical to evolutionary inference.
description: IPM-bighorn_archiveThis .zip file contains two .txt files, one with data for females (IPM-bighornEwes_archive.txt) and another for males (IPM-bighornMales_archive.txt). Both files include a list of individual identifiers for parents and offspring. IPM-bighornEwes_archive.txt also includes variables year, cohort, age and mass (in Kg, adjusted for September 15th).IPMbighorn_archive.zip
DOI: 10.5061/dryad.7pn71
title: Data from: The very low-frequency band of heart rate variability represents the slow recovery component after a mental stress task

description: The very low-frequency (VLF) band of heart rate variability (HRV) has
 different characteristics compared with other HRV components. Here we
 investigated differences in HRV changes after a mental stress task. After
 the task, the high-frequency (HF) band and ratio of high- to low-frequency
 bands (LF/HF) immediately returned to baseline. We evaluated the
 characteristics of VLF band changes after a mental stress task. We
 hypothesized that the VLF band decreases during the Stroop color word task
 and there would be a delayed recovery for 2 h after the task (i.e., the
 VLF change would exhibit a “slow recovery”). Nineteen healthy, young
 subjects were instructed to rest for 10 min, followed by a Stroop color
 word task for 20 min. After the task, the subjects were instructed to rest
 for 120 min. For all subjects, R-R interval data were collected; analysis
 was performed for VLF, HF, and LF/HF ratio. HRV during the rest time and
 each 15-min interval of the recovery time were compared. An analysis of
 the covariance was performed to adjust for the HF band and LF/HF ratio as
 confounding variables of the VLF component. HF and VLF bands significantly
 decreased and the LF/HF ratio significantly increased during the task
 compared with those during rest time. During recovery, the VLF band was
 significantly decreased compared with the rest time. After the task, the
 HF band and LF/HF ratio immediately returned to baseline and were not
 significantly different from the resting values. After adjusting for HF
 and LF/HF ratio, the VLF band had significantly decreased compared with
 that during rest. The VLF band is the “slow recovery” component and the HF
 band and LF/HF ratio are the “quick recovery” components of HRV. This VLF
 characteristic may clarify the unexplained association of the VLF band in
 cardiovascular disease prevention.
description: plos one
 dryad2
DOI: 10.5061/dryad.5dn13
title: Data from: Significant correlation between retinal venous tortuosity and aqueous vascular endothelial growth factor concentration in eyes with central retinal vein occlusion

description: Purpose: To determine whether the degree of venous tortuosity is
 significantly correlated with the aqueous vascular endothelial growth
 factor (VEGF) concentration in eyes with a central retinal vein occlusion
 (CRVO). Methods: We reviewed the medical records of 32 eyes of 32 patients
 who had macular edema due to a CRVO. All of the patients were examined at
 the Nagoya University Hospital and were scheduled to receive an
 intravitreal injection of bevacizumab (IVB) or ranibizumab (IVR) within 12
 weeks of the onset of the CRVO to treat the macular edema. Aqueous humor
 was collected just before the IVB or IVR, and the VEGF concentration was
 determined by enzyme-linked immunosorbent assay (ELISA). The venous
 tortuosity index was calculated by dividing the length of the retinal
 veins by the chord length of the same segment. The correlation between the
 mean tortuosity index of the inferotemporal and supratemporal branches of
 the retinal vein and the aqueous VEGF concentration was determined.
 Results: The mean aqueous VEGF concentration was 384 ± 312 pg/ml with a
 range of 90 to 1077 pg/ml. The degree of venous tortuosity was
 significantly correlated with the VEGF concentration in the aqueous. (r =
 0.49, P = 0.004), with the foveal thickness (r = 0.40, P = 0.02), and with
 the best-corrected visual acuity (r = 0.38, P = 0.03). Conclusions: The
 significant correlation between the aqueous VEGF concentration and the
 venous tortuosity indicates that the degree of retinal venous tortuosity
 can be used to identify eyes that are at a high risk of developing
 neovascularization.
description: CRVO tortuosity Data
 English
DOI: 10.5061/dryad.hf876
title: Data from: Ancient DNA microsatellite analyses of the extinct New Zealand giant moa (Dinornis robustus) identify relatives within a single fossil site

description: By analysing ancient DNA (aDNA) from 74 14C-dated individuals of the
 extinct South Island giant moa (Dinornis robustus) of New Zealand, we
 identified four dyads of closely related adult females. Although our total
 sample included bones from four fossil deposits located within a 10 km
 radius, these eight individuals had all been excavated from the same
 locality. Indications of kinship were based on high pairwise genetic
 relatedness (rXY) in six microsatellite markers genotyped from aDNA,
 coupled with overlapping radiocarbon ages. The observed rXY values in the
 four dyads exceeded a conservative cutoff value for potential relatives
 obtained from simulated data. In three of the four dyads, the kinship was
 further supported by observing shared and rare mitochondrial haplotypes.
 Simulations demonstrated that the proportion of observed dyads above the
 cutoff value was at least 20 times higher than expected in a randomly
 mating population with temporal sampling, also when introducing population
 structure in the simulations. We conclude that the results must reflect
 social structure in the moa population and we discuss the implications for
 future aDNA research.
description: Microsat allele calls
 for D. robustusMicrosat allele calls
 for the extinct South Island giant moa (Dinornis robustus), genotyped in
 six microsatellite loci.D.robustus_microsats.xlsx
DOI: 10.5061/dryad.sb7m2
title: Data from: Taxonomic and phylogenetic determinants of functional composition of Bolivian bat assemblages

description: Understanding diversity patterns and the potential mechanisms driving them
 is a fundamental goal in ecology. Examination of different dimensions of
 biodiversity can provide insights into the relative importance of
 different processes acting upon biotas to shape communities.
 Unfortunately, patterns of diversity are still poorly understood in
 hyper-diverse tropical countries. Here, we assess spatial variation of
 taxonomic, functional and phylogenetic diversity of bat assemblages in one
 of the least studied Neotropical countries, Bolivia, and determine whether
 changes in biodiversity are explained by the replacement of species or
 functional groups, or by differences in richness (i.e., gain or loss of
 species or functional groups). Further, we evaluate the contribution of
 phylogenetic and taxonomic changes in the resulting patterns of functional
 diversity of bats. Using well-sampled assemblages from published studies
 we examine noctilionoid bats at ten study sites across five ecoregions in
 Bolivia. Bat assemblages differed from each other in all dimensions of
 biodiversity considered; however, diversity patterns for each dimension
 were likely structured by different mechanisms. Within ecoregions,
 differences were largely explained by species richness, suggesting that
 the gain or loss of species or functional groups (as opposed to
 replacement) was driving dissimilarity patterns. Overall, our results
 suggest that whereas evolutionary processes (i.e., historical connection
 and dispersal routes across Bolivia) create a template of diversity
 patterns across the country, ecological mechanisms modify these templates,
 decoupling the observed patterns of functional, taxonomic and phylogenetic
 diversity in Bolivian bats. Our results suggests that elevation represents
 an important source of variability among diversity patterns for each
 dimension of diversity considered. Further, we found that neither
 phylogenetic nor taxonomic diversity can fully account for patterns of
 functional diversity, highlighting the need for examining different
 dimensions of biodiversity of bats in hyperdiverse ecosystems.
description: Noctilionoid
 batsThis data package
 contains information on Noctilionoidea bats captured at 10 study sites
 across Bolivia. Taxonomic names and foraging guilds following Kalko
 (1997), Sampaio et al. (2003) and Aguirre (2007) are described for each
 species. The package includes data from published sources and unpublished
 theses. Authors of the theses have been included as coauthors of the data
 package. If you use this data please cite the data package, the original
 paper (Aguirre et al. 2016, PLOSone) and the published sources detailed in
 the Metadata.
DOI: 10.5061/dryad.63030
title: Data from: Prognostic value of cerebral tissue oxygen saturation during neonatal extracorporeal membrane oxygenation

description: Objectives: Extracorporeal membrane oxygenation support is indicated in
 severe and refractory respiratory or circulatory failures. Neurological
 complications are typically represented by acute ischemic or hemorrhagic
 lesions, which induce higher morbidity and mortality. The primary goal of
 this study was to assess the prognostic value of cerebral tissue oxygen
 saturation (StcO2) on mortality in neonates and young infants treated with
 ECMO. A secondary objective was to evaluate the association between StcO2
 and the occurrence of cerebral lesions. Study Design: This was a
 prospective study in infants &lt; 3 months of age admitted to a
 pediatric intensive care unit and requiring ECMO support. Measurements:
 The assessment of cerebral perfusion was made by continuous StcO2
 monitoring using near-infrared spectroscopy (NIRS) sensors placed on the
 two temporo-parietal regions. Neurological lesions were identified by MRI
 or transfontanellar echography. Results: Thirty-four infants &lt;3
 months of age were included in the study over a period of 18 months. The
 ECMO duration was 10±7 days. The survival rate was 50% (17/34 patients),
 and the proportion of brain injuries was 20% (7/34 patients). The mean
 StcO2 during ECMO in the non-survivors was reduced in both hemispheres (p
 = 0.0008 right, p = 0.03 left) compared to the survivors. StcO2 was also
 reduced in deceased or brain-injured patients compared to the survivors
 without brain injury (p = 0.002). Conclusion: StcO2 appears to be a strong
 prognostic factor of survival and of the presence of cerebral lesions in
 young infants during ECMO.
description: NIRS-ECMO
 Database-v21_2_17This database has been
 anonymized. It includes the demographic data of the 34 patients included
 in this study conducted at the Trousseau Hospital. It includes data on
 cerebral tissue saturation and cerebral imaging data