cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.2677927
title: Genomes plasmids MDR B. fragilis ONT sequence read files in fastq format

description: Supporting data for the manuscript <em>Complete genome assembly of clinical multidrug resistant Bacteroides fragilis isolates enables comprehensive identification of antimicrobial resistance genes and plasmids.</em>

Oxford Nanopore reads demultiplexed with Deepbinner v0.2.0 and base-called (with demultiplexing) using Albacore v2.3.3. Barcodes and adapters were removed with Porechop v0.2.4 with the --discard_middle option.

Data from each isolate was produced from two runs per isolate. Data for the individual runs are included here. They can easily be concatenated eg with cat. Runs are named TVS_01,. TVS_02, TVS_03 and TVS_04.

Fast5 (only demultiplexed with deepbinner and basecalled with albacore) as well as illumina reads and genome assemblies can be found via the NCBI bioproject accessions:

Isolates, NCBI bioproject accession no:

CCUG4856T, PRJNA525024

BFO17, PRJNA244943

BFO18, PRJNA244944

S01, PRJNA244942

BFO42, PRJNA253771

BFO67, PRJNA254401

BFO85, PRJNA254455

 

<strong>md5sum's (also found in the file md5.md5):</strong>

135d0570a1e49e25c8fde59f321cca68  BFO17_TVS_03_99377.barcode02_trimmed.fastq.gz<br>
3c6ca800a1f735937c0cffccd263fb82  BFO18_TVS_01_97673.barcode03_trimmed.fastq.gz<br>
dc37823950f529d3a859b7a7c514af8c  BFO18_TVS_03_99377.barcode03_trimmed.fastq.gz<br>
abd707404f9ebbc38652e45ed378ca21  BFO42_TVS_02.barcode10_trimmed.fastq.gz<br>
9761e9ab082e276624c5778dcbeaffd2  BFO42_TVS_04.barcode10_trimmed.fastq.gz<br>
ffc27009c0f7fead1af84ce045dbe5f3  BFO67_TVS_02.barcode09_trimmed.fastq.gz<br>
06c363a7feeeb88f9d195b3769b37f2b  BFO67_TVS_04.barcode09_trimmed.fastq.gz<br>
5553c95cc98f4b9d4cfb38c4f8f8f037  BFO85_TVS_02.barcode08_trimmed.fastq.gz<br>
b1a8013cba7a079cee6d3bdd6cd97ff2  BFO85_TVS_04.barcode08_trimmed.fastq.gz<br>
8169225219a5fb20935d5f0304aa80c5  CCUG4856T_TVS_01_97673.barcode01_trimmed.fastq.gz<br>
a509b0ae912a798a91e677795198c1c6  CCUG5846T_TVS_03_99377.barcode01_trimmed.fastq.gz<br>
8a9d2eb8b626a6e87ed267d31aa220e3  S01_TVS_01_97673.barcode04_trimmed.fastq.gz<br>
69e239a17becc25a4f103dfc3bf5886a  S01_TVS_03_99377.barcode04_trimmed.fastq.gz
DOI: 10.17632/tmf7hh3x3r.1
title: Data for: HBOA ameliorates CCl4-incuded liver fibrosis through inhibiting TGF-β1/Smads, NF-κB and ERK signaling pathways

description: Original images of Western Blot
DOI: 10.17030/uclan.data.00000187
title: La2NiO4.11 Magnetism
DOI: 10.6084/m9.figshare.20079464
title: Revealing the Cyber Security Non-Compliance "Attribution Gulf"

description: Dataset for the publication: Revealing the Cyber Security Non-Compliance "Attribution Gulf". <br> Publication link: http://hdl.handle.net/10125/71169
DOI: 10.6084/m9.figshare.20079464.v1
title: Revealing the Cyber Security Non-Compliance "Attribution Gulf"

description: Dataset for the publication: Revealing the Cyber Security Non-Compliance "Attribution Gulf". <br> Publication link: http://hdl.handle.net/10125/71169
DOI: 10.6084/m9.figshare.20079431
title: Cyberhate: Profiling of Potential Targets

description: Dataset for the publication Cyberhate: Profiling of Potential Targets. <br> Publication link: https://aisel.aisnet.org/confirm2020/22
DOI: 10.6084/m9.figshare.20079431.v1
title: Cyberhate: Profiling of Potential Targets

description: Dataset for the publication Cyberhate: Profiling of Potential Targets. <br> Publication link: https://aisel.aisnet.org/confirm2020/22
DOI: 10.6084/m9.figshare.20079434
title: Global dataset of stable isotopes of plant water and its sources

description: <br> This is a global dataset of water isotopic composition of plant water and its sources, and it compiles data from 112 different articles <br> These files contain the data included in this publication: Title: Isotopic offsets between bulk plant water and its sources are larger in cool and wet environments Authors list: Javier de la Casa, Adriá Barbeta, Asun Rodriguez-Uña, Lisa Wingate, Jérôme Ogée and Teresa E. Gimeno. <br> Accepted for publication in Hydrology and Earth System Sciences on the 10th June 2022. For an online discussion on this publication see: https://hess.copernicus.org/preprints/hess-2021-333/ Corresponding author: Javier de la Casa, delacasa.snchz@gmail.com <br> Please, read and cite this publication when using this database and contact the corresponding author for further enquires. <br> It is composed of three different databases. One for isotopic composition of water sources (WATERISOsources), other for the plant water (WATERISOplant) and other for the metadata associated to each publication (WATERISOmeta). <br> <br>
DOI: 10.5517/ccdc.csd.cc26n1nl
title: CCDC 2045059: Experimental Crystal Structure Determination

description: Related Article: Davide Balestri, Paolo P. Mazzeo, Roberto Perrone, Fabio Fornari, Federica Bianchi, Maria Careri, Alessia Bacchi, Paolo Pelagatti|2021|Angew.Chem.,Int.Ed.|60|10194|doi:10.1002/anie.202017105
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28q269
title: CCDC 2106580: Experimental Crystal Structure Determination

description: Related Article: Prabhuodeyara M Gurubasavaraj|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bfc05
title: CCDC 2157786: Experimental Crystal Structure Determination

description: Related Article: Aldo S. Estrada-Montaño, Marco A. Leyva, J. Benito Pelayo, Felipe J. González, Maria J. Rosales-Hoz|2022|Polyhedron|222|115936|doi:10.1016/j.poly.2022.115936
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bfc16
title: CCDC 2157787: Experimental Crystal Structure Determination

description: Related Article: Aldo S. Estrada-Montaño, Marco A. Leyva, J. Benito Pelayo, Felipe J. González, Maria J. Rosales-Hoz|2022|Polyhedron|222|115936|doi:10.1016/j.poly.2022.115936
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bfc27
title: CCDC 2157788: Experimental Crystal Structure Determination

description: Related Article: Aldo S. Estrada-Montaño, Marco A. Leyva, J. Benito Pelayo, Felipe J. González, Maria J. Rosales-Hoz|2022|Polyhedron|222|115936|doi:10.1016/j.poly.2022.115936
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.6652073
title: Churabana kuroshioae SPAdes preassembly

description: .
DOI: 10.5281/zenodo.6652072
title: Churabana kuroshioae SPAdes preassembly

description: .
DOI: 10.34740/kaggle/ds/1429731
title: Dataset ✔️
DOI: 10.6084/m9.figshare.19719088.v2
title: Indian Court Decision Annotated Corpus.xlsx

description: Dataset contains 50 Supreme Court of India Court Decisions annotated for Named Entity Recognition in the case documents with three different encoding schemes viz., IOB, IOBES, BILOU. The dataset is created using the CoNLL-2003 format.
DOI: 10.5281/zenodo.6652108
title: Cryptoleucopteryx plumbea SPAdes preassembly

description: .
DOI: 10.5281/zenodo.6652107
title: Cryptoleucopteryx plumbea SPAdes preassembly

description: .
DOI: 10.5281/zenodo.6627159
title: Hyperbard (Dataset)

description: First release of Hyperbard. Hyperbard is a dataset of diverse relational data representations derived from Shakespeare's plays. Our representations range from simple graphs capturing character co-occurrence in single scenes to hypergraphs encoding complex communication settings and character contributions as hyperedges with edge-specific node weights. By making multiple intuitive representations readily available for experimentation, we facilitate rigorous representation robustness checks in graph learning, graph mining, and network analysis, highlighting the advantages and drawbacks of specific representations. The code used to create Hyperbard is maintained on GitHub.
DOI: 10.5281/zenodo.6627158
title: Hyperbard (Dataset)

description: First release of Hyperbard. Hyperbard is a dataset of diverse relational data representations derived from Shakespeare's plays. Our representations range from simple graphs capturing character co-occurrence in single scenes to hypergraphs encoding complex communication settings and character contributions as hyperedges with edge-specific node weights. By making multiple intuitive representations readily available for experimentation, we facilitate rigorous representation robustness checks in graph learning, graph mining, and network analysis, highlighting the advantages and drawbacks of specific representations. The code used to create Hyperbard is maintained on GitHub.
DOI: 10.6084/m9.figshare.19548547
title: Supplementary Material for: Dynamic observation: Immune-privileged microenvironment limited the effectiveness of immunotherapy in an intraocular metastasis mouse model

description: Introduction: Intraocular metastasis (IM) occurred in approximately 8-10% of patients with metastatic malignancy, for whom oncological immunotherapies showed poor visual potential. However, the mechanism for that inefficiency remains unclear and requires further exploration. Methods: we established a novel mouse model of intraocular metastasis by intracarotid injection of cutaneous melanoma cells. We investigated disease progression using ophthalmic and histological examinations. We used combined anti-PD-1 and anti-CTLA4 antibodies for immunotherapy and evaluate the therapeutic effects in mice model. In addition, we characterized the immune microenvironment of tumor infiltrating CD8+ T by fluorescence staining and assessed their cytotoxicity by flow cytometry. Results: All mice presented IM in the left eye, while the right eye was healthy. Uveal tissues with rich vascularity (e.g., the iris, ciliary body, and choroid) initiated intraocular metastasis at an early stage, and intraocular metastasis development resulted in several secondary changes, including corneal swelling, retinal detachment, and intratumoral haemorrhage. Immunotherapy could inhibit intraocular metastasis, prolong the time to eye rupture but did not prevent rupture ending. This inefficiency might be attributed to ocular tissues specificities that inhibited CD8+ T cells infiltration via PD-L1 expression. PD-L1low corneal tissue resisted tumor invasion with high levels of CD8+ T cells infiltration, whereas CD8+ T cells were deficient in PD-L1high uveal metastasis. Furthermore, we found a significantly increased PD-1+/- CD4+ and PD-1+/- CD8+ T cells infiltrating the intratumoral haemorrhage area. Although these CD8+ T cells in the IM were not exhausted and had a higher capacity of cytotoxicity (higher Interferon-γ ratio) than CD8+ T cells in the blood, FasL+ PD-L1+ ocular tissue can strongly inhibit these IM infiltrating T cells. Conclusions: Immunotherapy can inhibit the disease progression of intraocular metastasis. Enhancing the effects of tumor-infiltrating CD8+ T cells should be one of the highest potentials to improve the visual potential.
DOI: 10.5519/qd.aszsao3z
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (28217 records)
DOI: 10.17028/rd.lboro.8174465
title: A randomized control trial assessing the effectiveness of the Ida Institute’s Why Improve My Hearing Telecare Tool in adults living with hearing loss.

description: Raw data (SPSS .sav file) from a randomized control trial assessing the effectiveness of the Ida Institute’s Why Improve My Hearing Telecare Tool in adults living with hearing loss.
DOI: 10.17028/rd.lboro.8174465.v1
title: A randomized control trial assessing the effectiveness of the Ida Institute’s Why Improve My Hearing Telecare Tool in adults living with hearing loss.

description: Raw data (SPSS .sav file) from a randomized control trial assessing the effectiveness of the Ida Institute’s Why Improve My Hearing Telecare Tool in adults living with hearing loss.
DOI: 10.5281/zenodo.6652187
title: Анкета за оценка степента на диабетна предразпоженост

description: <strong><em>Разработване и интерпретиране на анкета за риск от заболяване от диабет тип 2- Многовариационнни статистически подходи</em></strong> Целта на настоящето изследване е да обобщи и обясни резултатите от анкета за проверка на заплахата от заболяване от захарен диабет тип 2. В анкетата участват 275 души на възраст между 21 и 76 години, които трябва да отговарят на 18 въпроса, свързани с потенциална заплаха от диабетно заболяване. Оригинален момент в изследването е, че за обработка и интерпретация на данните от анкетата са използвани методи на многовариационната статистика – кластерен анализ и анализ на главни компоненти. Крайна цел бе да се открият образци на подобие между променливите (въпросите от анкетата) , както и да се идентифицират скрити фактори, определящи структурата на данните. Интересно бе да се свържат групи на подобие между обектите (участниците в анкетата), както застрашеността на обектите от заболяване от захарен диабет тип 2. Намерено бе, че 5 латентни фактора регулират структурата на данните, наречени условно “влошен обш здравен статус”, „фактор на метаболитен синдром”, „фактор на тютюнопушене, злоупотреба с алкохол и стрес”, „наследствен и полов фактор”, „фактор на здравословно хранене”.
DOI: 10.5281/zenodo.6652186
title: Анкета за оценка степента на диабетна предразпоженост

description: <strong><em>Разработване и интерпретиране на анкета за риск от заболяване от диабет тип 2- Многовариационнни статистически подходи</em></strong> Целта на настоящето изследване е да обобщи и обясни резултатите от анкета за проверка на заплахата от заболяване от захарен диабет тип 2. В анкетата участват 275 души на възраст между 21 и 76 години, които трябва да отговарят на 18 въпроса, свързани с потенциална заплаха от диабетно заболяване. Оригинален момент в изследването е, че за обработка и интерпретация на данните от анкетата са използвани методи на многовариационната статистика – кластерен анализ и анализ на главни компоненти. Крайна цел бе да се открият образци на подобие между променливите (въпросите от анкетата) , както и да се идентифицират скрити фактори, определящи структурата на данните. Интересно бе да се свържат групи на подобие между обектите (участниците в анкетата), както застрашеността на обектите от заболяване от захарен диабет тип 2. Намерено бе, че 5 латентни фактора регулират структурата на данните, наречени условно “влошен обш здравен статус”, „фактор на метаболитен синдром”, „фактор на тютюнопушене, злоупотреба с алкохол и стрес”, „наследствен и полов фактор”, „фактор на здравословно хранене”.
DOI: 10.34740/kaggle/dsv/3813528
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.6652207
title: The input data set includes 729 objects (patients) and 39 variables (clinical qualitative and quantitative descriptors).

description: For reliable data treatment and interpretation qualitative descriptors were omitted and only numerical clinical indicators were included in the data matrix. Finally, the data set dimension was [729 x 18]. The data were treated by hierarchical cluster analysis and factor analysis. The major goal of the data mining was to reach statistically significant partitioning of the objects and variables into similarity patterns (clusters) which helps to better understand the data structure, to assess the meaning of the partitioning achieved, thus promoting the evaluation of the health status of the patients and the role of specific descriptors for the formation of the partitioning patterns. 3D classification Python tool.
DOI: 10.5281/zenodo.6652206
title: The input data set includes 729 objects (patients) and 39 variables (clinical qualitative and quantitative descriptors).

description: For reliable data treatment and interpretation qualitative descriptors were omitted and only numerical clinical indicators were included in the data matrix. Finally, the data set dimension was [729 x 18]. The data were treated by hierarchical cluster analysis and factor analysis. The major goal of the data mining was to reach statistically significant partitioning of the objects and variables into similarity patterns (clusters) which helps to better understand the data structure, to assess the meaning of the partitioning achieved, thus promoting the evaluation of the health status of the patients and the role of specific descriptors for the formation of the partitioning patterns. 3D classification Python tool.
DOI: 10.6084/m9.figshare.20079785
title: MEME output files

description: MEME output files
DOI: 10.6084/m9.figshare.20079785.v1
title: MEME output files

description: MEME output files
DOI: 10.34740/kaggle/dsv/3813585
title: 2021 World Population (updated daily)
DOI: 10.5281/zenodo.6652158
title: Original dataset of :"First pre-Miocene paleomagnetic data from the Calabrian block document a 160° post-late Jurassic CCW rotation as a consequence of left-lateral shear along Alpine Tethys"

description: In this table the original paleomagnetic dataset related to the research article :"First pre-Miocene paleomagnetic data from the Calabrian block document a 160° post-late Jurassic CCW rotation as a consequence of left-lateral shear along Alpine Tethys" is published
DOI: 10.5281/zenodo.6652157
title: Original dataset of :"First pre-Miocene paleomagnetic data from the Calabrian block document a 160° post-late Jurassic CCW rotation as a consequence of left-lateral shear along Alpine Tethys"

description: In this table the original paleomagnetic dataset related to the research article :"First pre-Miocene paleomagnetic data from the Calabrian block document a 160° post-late Jurassic CCW rotation as a consequence of left-lateral shear along Alpine Tethys" is published
DOI: 10.6092/2e16f194-9572-44a7-a44e-8121e3c11cd7
title: Microzooplankton South Adriatic-PRISMA1-Flussi Project

description: Microzooplankton abundance and composition were determined in the South Adriatic Sea in the framework of the Italian National Research Project PRISMA1-Flussi Project (1995-1996).
description: Sampling at discrete water depths with Niskin bottles deployed with a CTD profiler. Samples were fixed with Ca(HCO3)2-buffered formaldehyde (4% final concentration) and cell abundance and species composition of phytoplankton were estimated according to Utermöhl’s method (1958), using an inverted microscope equipped with phase contrast, at 200-320-400x final magnifications.
description: DwC-A file
DOI: 10.5281/zenodo.6652182
title: Data from: Cranial anatomy of the giant anteater from north-western Venezuela (Myrmecophaga tridactyla artata, Pilosa: Myrmecophagidae)

description: Annotated R codes and datasets used in: Carrillo et al. 2022. Cranial anatomy of the giant anteater from north-western Venezuela (<em>Myrmecophaga tridactyla artata</em>, Pilosa: Myrmecophagidae). <em>Anartia</em>
DOI: 10.5281/zenodo.6652181
title: Data from: Cranial anatomy of the giant anteater from north-western Venezuela (Myrmecophaga tridactyla artata, Pilosa: Myrmecophagidae)

description: Annotated R codes and datasets used in: Carrillo et al. 2022. Cranial anatomy of the giant anteater from north-western Venezuela (<em>Myrmecophaga tridactyla artata</em>, Pilosa: Myrmecophagidae). <em>Anartia</em>
DOI: 10.5281/zenodo.6652264
title: Hard X-ray helical dichroism of disordered molecular media

description: Ptychographic reconstruction of X-ray OAM beams and X-ray absorption spectra recorded on [Fe(4,4′-diMebpy)3]2+. Data associated with the publication "Hard X-ray helical dichroism of disordered molecular media", Nature Photonics (2022).
DOI: 10.5281/zenodo.6652263
title: Hard X-ray helical dichroism of disordered molecular media

description: Ptychographic reconstruction of X-ray OAM beams and X-ray absorption spectra recorded on [Fe(4,4′-diMebpy)3]2+. Data associated with the publication "Hard X-ray helical dichroism of disordered molecular media", Nature Photonics (2022).
DOI: 10.5517/ccdc.csd.cc24zcwd
title: CCDC 1995404: Experimental Crystal Structure Determination

description: Related Article: Ho-Yin Wong, Xiao-Le Zhou, Chi-Tung Yeung, Wai-Lun Man, Przemysław Woźny, Aleksandra Półrolniczak, Andrzej Katrusiak, Marcin Runowski, Ga-Lai Law|2022|Chem. Eng. J. Adv.|11|100326|doi:10.1016/j.ceja.2022.100326
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24zd1l
title: CCDC 1995409: Experimental Crystal Structure Determination

description: Related Article: Ho-Yin Wong, Xiao-Le Zhou, Chi-Tung Yeung, Wai-Lun Man, Przemysław Woźny, Aleksandra Półrolniczak, Andrzej Katrusiak, Marcin Runowski, Ga-Lai Law|2022|Chem. Eng. J. Adv.|11|100326|doi:10.1016/j.ceja.2022.100326
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24zd2m
title: CCDC 1995410: Experimental Crystal Structure Determination

description: Related Article: Ho-Yin Wong, Xiao-Le Zhou, Chi-Tung Yeung, Wai-Lun Man, Przemysław Woźny, Aleksandra Półrolniczak, Andrzej Katrusiak, Marcin Runowski, Ga-Lai Law|2022|Chem. Eng. J. Adv.|11|100326|doi:10.1016/j.ceja.2022.100326
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25zh9z
title: CCDC 2025301: Experimental Crystal Structure Determination

description: Related Article: Emad Khelil Mohammed Zangana|2019|Thesis|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.