cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.tj7k5
title: Data from: Multiple paternity in a wild population of Armadillidium vulgare: influence of infection with Wolbachia?

description: Female multiple mating has been extensively studied to understand how
 non-obvious benefits, generally thought to be of genetic nature, could
 overcome heavy costs such as an increased risk of infection during mating.
 However, the impact of infection itself on multiple mating has rarely been
 addressed. The interaction between the bacterium Wolbachia and its
 terrestrial crustacean host, Armadillidium vulgare, is a relevant model to
 investigate this question. In this association, Wolbachia is able to turn
 genetic males into functional females (i.e. feminization), thereby
 distorting the sex ratio and decreasing the number of available males at
 the population scale. Moreover, in A. vulgare, females have been shown to
 mate multiply under laboratory conditions and males prefer uninfected
 females over infected ones. Additionally, three different Wolbachia
 strains are known to infect A. vulgare and these strains differ in their
 transmission rate and virulence. All these elements suggest a potential
 impact of different Wolbachia strains on multiple mating. To investigate
 this assumption, we collected gravid females in a wild A. vulgare
 population consisting of both uninfected females and females infected with
 two different Wolbachia strains (wVulM and wVulC) and performed paternity
 analyses on the obtained broods using microsatellite markers. We
 demonstrate that (a) multiple paternity is common in this wild population
 of A. vulgare, with a mean number of fathers of 4.48 ± 1.24 per brood and
 (b) females infected with wVulC produced broods with a lower multiple
 paternity level compared to females infected with wVulM and uninfected
 ones. This work improves our knowledge of the impact of infections on
 reproductive strategies.
description: Genotyping of mothers
 and offspringThis table represents
 the genotypes of mothers and offspring used in the
 publication.data for
 dryad.xlsx
DOI: 10.5061/dryad.c919g
title: Data from: Comparing taxonomic and geographic scales in the morphologic disparity of Ordovician through Early Silurian Laurentian Crinoids

description: Interpretations of morphologic radiations and macroevolutionary patterns
 are dependent on a priori choices of taxonomic and geographic scales of
 study. The results of disparity analysis at varying taxonomic (species and
 genus) and geographic (regional, biofacies, and community) scales are
 examined in a study of Ordovician though Early Silurian crinoids. Using
 discrete morphologic characters, we examined the disparity of 421 crinoids
 from 65 Laurentian biofacies. Crinoid disparity differs when analyzed at
 the regional and biofacies levels. Regardless of fluctuations in regional
 crinoid disparity, average within-biofacies disparity was static
 throughout the Ordovician, deviating only during the Silurian because of
 the proliferation of the morphologically aberrant myelodactylid crinoids.
 The choice of taxonomic level does not have an effect at the biofacies
 level. However, at the regional level, the two taxonomic scales (genus and
 species) can produce different results because of variation in the number
 of species per genus through time and the amount of morphologic variation
 within individual genera. Weighting disparity by abundance provides a
 metric combining morphology and community structure. Average weighted
 disparity at the community level showed patterns similar to that of the
 biofacies-level disparity curve, but this metric has a greater degree of
 variation between biofacies. Biofacies with a low ratio of weighted to
 unweighted disparity display the distinctive community structure (based on
 aerosol filtration theory) that is often reported in crinoid assemblages.
description: Supplemental
 MaterialsList of the biofacies
 included in the study and literature used in the collection of morphologic
 and abundance data.
DOI: 10.5061/dryad.bp11pv2
title: Data from: Cryptic haplotype-specific gamete selection yields offspring with optimal MHC immune genes

description: Females choose specific mates in order to produce fitter offspring.
 However, several factors interfere with females' control over
 fertilization of their eggs, including sneaker males and phenotypically
 unpredictable allele segregation during meiosis. Mate choice at the
 individual level thus provides only a poor approximation for obtaining the
 best genetic match. Consequently, post-copulatory sperm selection by
 female oocytes has been proposed as a mechanism to achieve complementary
 combinations of parental haplotypes. Here, using controlled in vitro
 fertilization of three-spined stickleback eggs, we find haplotype-specific
 fertilization bias towards gametes with complementary major
 histocompatibility complex (MHC) immunogenes. The resulting zygote (and
 thus offspring) genotypes exhibit an intermediate level of individual MHC
 diversity that was previously shown to confer highest pathogen resistance.
 Our finding of haplotype-specific gamete selection thus represents an
 intriguing mechanism for fine-tuned optimization of the offspring's
 immune gene composition and an evolutionary advantage in the Red Queen
 dynamics of host-parasite coevolution.
description: SpermSelection_DataSheetsData file with all data necessary to replicate the analyses described in the associated manuscript. The manuscript describes an experimental assay investigating whether fertilization of three-spined stickleback eggs depends on MHC haplotypes of egg and sperm. The data contains information on fertilization success, sequence divergence among gamete MHC haplotypes and other parameters necessary for the analyses. Fertilizations were done in vitro.
DOI: 10.5061/dryad.f60j5
title: Data from: Deception by flexible alarm mimicry in an African bird

description: Deception is common in nature, but victims of deception discriminate
 against and ultimately ignore deceptive signals when they are produced too
 frequently. Flexible variation of signals could allow evasion of such
 constraints. Fork-tailed drongos (Dicrurus adsimilis) use false alarm
 calls to scare other species away from food that they then steal. We show
 that drongos mimic the alarms of targeted species. Further, target species
 reduce their response to false alarm calls when they are repeated.
 However, the fear response is maintained when the call is varied. Drongos
 exploit this propensity by changing their alarm-call type when making
 repeated theft attempts on a particular species. Our results show that
 drongos can evade the frequency-dependent constraints that typically limit
 deception payoffs through flexible variation of their alarm calls.
description: DataThis file contains data
 used for analyses detailed in the manuscript 'Deception by flexible
 alarm mimicry in an African bird'.
DOI: 10.15468/dl.38btpe
title: Occurrence Download

description: A dataset containing 975 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Oceania",
 "Country is Australia",
 "GadmGid is AUS.11_1",
 "OccurrenceStatus is Present",
 "Year 2026-2026"
 ]
}

 The dataset includes 975 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001134-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.82pb28v
title: Data from: Natural selection favors local specialization in a widespread habitat generalist

description: The ecological success of widespread species is attributed to an ability
 to generalize across diverse habitats, a so-called “jack of all trades”
 scenario. However, this assumption ignores the potential for local
 specialization, an alternative scenario whereby spatial variation in
 natural selection generates habitat-specific adaptive landscapes. Despite
 a growing recognition of spatial variation in selection in nature, and the
 inevitable exploitation of distinct habitat types across an extensive
 geographic range, attention to this hypothesis has been lacking for
 widespread taxa. We test this hypothesis using data from four populations
 of a widespread species drawing from two distinct habitat types (tree- and
 boulder-dominated, respectively). Specifically, we compare major
 physiological traits of male and female lizards by habitat type and then
 estimate the form of natural selection on those traits for each sex in
 each habitat (i.e., their adaptive landscapes). We detected significant
 differences in morphology and performance across habitats that mirror
 interspecific patterns. Importantly, patterns of linear and non-linear
 selection on these traits were habitat-specific for both sexes, indicating
 a clear but underappreciated capacity for local specialization. Our
 findings directly challenge assumptions of habitat generalism in
 widespread taxa, and instead reveal a novel role for adaptive
 diversification in driving their ecological success.
description: Morphological, sprint
 performance, survival, and thermal ecological data for tree lizards used
 in this study.Raw measurements of
 morphology (body size, hind limb length, and mass), estimates of maximal
 sprint speed (on two substrates), thermal data (body temperature and
 preferred temperatures in a laboratory gradient), and field survival data
 (absolute and relative fitness) on the adult tree lizards (Urosaurus
 ornatus) included in our study. Data are divided into three tabs-one tab
 for each sex (male/female) for the main dataset, and a third tab that
 includes thermal preference data for the supplementary materials (Text
 S1). Tabs also include columns indicating the habitat type (boulder/tree)
 and population (two per habitat) surveyed, and individual lizard
 identifiers, that we used. The final tab (labeled 'Variable
 KEY') provides further description of the data (with variable units,
 when applicable).TaylorTernesLattanzio_Evolution-RawData.xlsx
DOI: 10.5061/dryad.73cf7
title: Data from: The contribution of female meiotic drive to the evolution of neo-sex chromosomes

description: Sex chromosomes undergo rapid turnover in certain taxonomic groups. One of
 the mechanisms of sex chromosome turnover involves fusions between sex
 chromosomes and autosomes. Sexual antagonism, heterozygote advantage, and
 genetic drift have been proposed as the drivers for the fixation of this
 evolutionary event. However, all empirical patterns of the prevalence of
 multiple sex chromosome systems across different taxa cannot be simply
 explained by these three mechanisms. In this study, we propose that female
 meiotic drive may contribute to the evolution of neo-sex chromosomes. The
 results of this study showed that in mammals, the XY1Y2 sex chromosome
 system is more prevalent in species with karyotypes of more bi-armed
 chromosomes, whereas the X1X2Y sex chromosome system is more prevalent in
 species with predominantly acrocentric chromosomes. In species where
 bi-armed chromosomes are favored by female meiotic drive, X-autosome
 fusions (XY1Y2 sex chromosome system) will be also favored by female
 meiotic drive. In contrast, in species with more acrocentric chromosomes,
 Y-autosome fusions (X1X2Y sex chromosome system) will be favored just
 because of the biased mutation rate towards chromosomal fusions. Further
 consideration should be given to female meiotic drive as a mechanism in
 the fixation of neo-sex chromosomes.
description: DryadThis table includes the
 data of multiple sex chromosome systems in mammals.Dryand.xlsx
DOI: 10.5061/dryad.tn888
title: Data from: Dogs recognize dog and human emotions

description: The perception of emotional expressions allows animals to evaluate the
 social intentions and motivations of each other. This usually takes place
 within species; however, in the case of domestic dogs, it might be
 advantageous to recognize the emotions of humans as well as other dogs. In
 this sense, the combination of visual and auditory cues to categorize
 others' emotions facilitates the information processing and indicates
 high-level cognitive representations. Using a cross-modal preferential
 looking paradigm, we presented dogs with either human or dog faces with
 different emotional valences (happy/playful versus angry/aggressive)
 paired with a single vocalization from the same individual with either a
 positive or negative valence or Brownian noise. Dogs looked significantly
 longer at the face whose expression was congruent to the valence of
 vocalization, for both conspecifics and heterospecifics, an ability
 previously known only in humans. These results demonstrate that dogs can
 extract and integrate bimodal sensory emotional information, and
 discriminate between positive and negative emotions from both humans and
 dogs.
description: Data used for the
 analysisExcel file containing
 the data used for the analysis (GLMM)Data
 Sheet.xlsx
DOI: 10.15468/dl.cz9nwe
title: Occurrence Download

description: A dataset containing 244 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diapensia purpurea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 244 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001135-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.qm6v6v1
title: Data from: A meta-analysis of whole genome duplication and the effects on flowering traits in plants

description: • Premise of the study: Polyploidy, or whole genome duplication (WGD), is
 common in plants despite theory suggesting that polyploid establishment is
 challenging and polyploids should be evolutionarily transitory. There is
 renewed interest in understanding the mechanisms that could facilitate
 polyploid establishment and explain their pervasiveness in nature. In
 particular, premating isolation from their diploid progenitors is
 suggested to be a crucial factor. In order to evaluate how changes in
 assortative mating occur, we need to understand the phenotypic effects of
 WGD on reproductive traits.• Methods: We used literature surveys and a
 meta-analysis to assess how WGD affects floral morphology, flowering
 phenology, and reproductive output in plants. We focused specifically on
 comparisons of newly generated polyploids (neopolyploids) and their
 parents to mitigate potential confounding effects of adaptation and drift
 that may be present in ancient polyploids. • Key results: The results
 indicated that across a broad representation of angiosperms, floral
 morphology traits increased in size, reproductive output decreased, and
 flowering phenology was unaffected by WGD. Additionally, we found that
 increased trait variation after WGD was uncommon for the phenotypic traits
 examined. • Conclusions: Our results suggest that the phenotypic effects
 on traits important to premating isolation of neopolyploids are in general
 small. Changes in flowering phenology, reproductive output, and phenotypic
 variation resulting from WGD may be less critical in facilitating
 premating isolation and neopolyploiestablishment. However, floral traits
 for which size is an important component of function (e.g., pollen
 transfer) could be strongly influenced by WGD. In compliance with data
 protection regulations, please contact the publication office if you would
 like to have your personal information removed from the database.
description: Metadata of studies
 examining reproductive traits before and after whole genome
 duplicationThis dataset contains
 metadata collected from publications that were used for the analyses in
 our study. It includes information about the study species and
 measurements of traits before and after whole genome
 duplication.Porturas et al.-American
 Journal of Botany 2018–Data.csv
DOI: 10.5061/dryad.k15f3t5
title: Data from: Quantifying patient preferences for symptomatic breast clinic referral: a decision analysis study

description: Objectives: Decision analysis study that incorporates patient preferences
 and probability estimates to investigate the impact of women’s preferences
 for referral or an alternative strategy of watchful waiting if faced with
 symptoms that could be due to breast cancer. Setting: Community-based
 study. Participants: Asymptomatic women aged 30-60 years. Interventions:
 Participants were presented with 11 health scenarios that represent the
 possible consequences of symptomatic breast problems. Participants were
 asked the risk of death that they were willing to take in order to avoid
 the health scenario using the standard gamble (SG) utility method. This
 process was repeated for all 11 health scenarios. Formal decision analysis
 for the preferred individual decision was then estimated for each
 participant. Primary outcome measure: The preferred diagnostic strategy,
 either watchful waiting or referral to a breast clinic. Sensitivity
 analysis was used to examine how each varied according to changes in the
 probabilities of the health scenarios. Results: A total of 35 participants
 completed the interviews, with median age 41 years (Interquartile range 35
 to 47 years). The majority of the study sample were employed (n=32,
 91.4%), with a third-level (university) education (n=32, 91.4%) and with
 knowledge of someone with breast cancer (n=30, 85.7%). When individual
 preferences were accounted for, 25 (71.4%) patients preferred watchful
 waiting to referral for triple assessment as their preferred initial
 diagnostic strategy. Sensitivity analysis shows that referral for triple
 assessment becomes the dominant strategy at the upper probability estimate
 (18%) of breast cancer in the community. Conclusions: Watchful waiting is
 an acceptable strategy for most women who present to their GP with breast
 symptoms. These findings suggest that current referral guidelines should
 take more explicit account of women’s preferences in relation in terms of
 the initial diagnostic strategy for symptomatic breast problems.
description: Breast cancer
 questionnaireValues for health state
 for each participant according to either standard gamble or visual
 analogue scale (VAS)
DOI: 10.5061/dryad.b4s71jj
title: Data from: Litter carbon and nutrient chemistry control the magnitude of soil priming effect

description: 1. Plant litter inputs can promote the decomposition of soil organic
 matter (OM) through the priming effect (PE). However, whereas leaf litter
 chemistry has long been identified as the primary driver of litter
 decomposition within biomes worldwide, little is known about how litter
 chemical traits influence the occurrence and strength of the PE. 2. Here,
 we studied the effects of 15 co-occurring C3 leaf litters of contrasting
 chemistry on C4 soil respiration by analyzing changes in 13C natural
 abundance during early and later stages of litter decomposition (up to 125
 days). 3. Besides an apparent PE of 16% in the first three days, soil C
 respiration was increased by 24% on average with leaf litter addition in
 the initial stage of decomposition (426 d) and by 8% at later stages
 (27125 d). Most interestingly, soil PE related well to initial litter
 chemistry and the dominant factors influencing the magnitude of the PE
 changed with decomposition stage. In the early stage of decomposition,
 litter leachate C content and litter hemicellulose concentration were
 positively correlated with the strength of the PE, whereas tannin
 concentration was negatively associated with soil PE. Together, tannin and
 hemicellulose explained half of the observed variation in the PE (R2 =
 0.58). In the later phase of decomposition, lignin and lignin:N ratios
 were negatively related to the PE, whereas Ca, K and Mg concentrations
 were positively related to the PE; lignin alone gave the best prediction
 of the PE (R2 = 0.58) at later decomposition stages. 4. Our findings
 provide evidence that the magnitude and direction of the PE is influenced
 by the chemistry of organic matter inputs and suggest that, as
 decomposition proceeds differently among litter of contrasting chemistry,
 litters can also have variable effect on soil PE through time. The
 predictive power of litter chemical traits on soil PE opens new
 perspectives for improving our mechanistic understanding of soil PE and
 improving our abilities to model soil C dynamics at variable scales.
description: Litter
 Chem_characteristicsThis Excel document
 includes the raw data for analysed in the manuscript including leaf litter
 C leachates, lignin, cellulose, hemicellulose, tannin, C, N, P, Ca, K, Mg,
 Mn concentrations and Lignin:N, and litter decomposition rates and soil
 priming effect.Litter Chem，Deco &
 PE.xls
DOI: 10.5061/dryad.d6v18
title: Data from: Interspecific competition alters nonlinear selection on offspring size in the field

description: Offspring size is one of the most important life-history traits with
 consequences for both the ecology and evolution of most organisms.
 Surprisingly, formal estimates of selection on offspring size are rare,
 and the degree to which selection (particularly nonlinear selection)
 varies among environments remains poorly explored. We estimate linear and
 nonlinear selection on offspring size, module size, and senescence rate
 for a sessile marine invertebrate in the field under three different
 intensities of interspecific competition. The intensity of competition
 strongly modified the strength and form of selection acting on offspring
 size. We found evidence for differences in nonlinear selection across the
 three environments. Our results suggest that the fitness returns of a
 given offspring size depend simultaneously on their environmental context,
 and on the context of other offspring traits. Offspring size effects can
 be more pervasive with regards to their influence on the fitness returns
 of other traits than previously recognized, and we suggest that the
 evolution of offspring size cannot be understood in isolation from other
 traits. Overall, variability in the form and strength of selection on
 offspring size in nature may reduce the efficacy of selection on offspring
 size and maintain variation in this trait.
description: sasdataField estimates of selection on offspring size in Watersipora subtorquata. Treatment refers to the environment in which colonies grew (1 = no competition, 2 = intermediate competition, 3 = intense competition), column A is standardised offspring size, column Z is standardised zooid size, column S is standardised colony senescence. Fitness is the sum of reproduction across the entire experimental period.