cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/vffwyvbdzy
title: The cutting path determination problem: input files and solutions' layouts

description: This contains the input files and solution layouts for the results obtained in the work of Silva et al. (2019) - Exact approaches for the cutting path determination problem. Also in Silva, E. F., 2016. Mathematical models to a cutting path determination problem. Master thesis, University of São Paulo. The input files contain the position of the reference point of each item placed. This positioning was taken from the solutions of Rodrigues and Toledo (2017) - A clique covering MIP model for the irregular strip packing problem. The solutions obtained are the optimal solutions from solving the cutting path determination problem with its characteristics described in detail in the thesis. The files are divided in two folders, one containing the solutions obtained when considering the division of overlapping edges and the other without considering the division.
DOI: 10.6084/m9.figshare.12547940.v1
title: JVASP-37681 to JVASP-38379

description: JARVIS-DFT input/output files
DOI: 10.17632/fm27fd2kts
title: Dataset Mendeley Economic Efficiency of Renewable Energy

description: Thus, the availability of data in the article entitled "Estimation of Renewable Energy Economic Potential Using the RETScreen Expert Method in the Archipelago Region" is mandatory to be declared.
DOI: 10.6084/m9.figshare.28714484.v1
title: <b>(</b>Source Data<b>) Coherent Energy Transfer in Coupled Nonlinear Microelectromechanical Resonators</b>

description: This dataset provides the source data of the paper "Coherent Energy Transfer in Coupled Nonlinear Microelectromechanical Resonators". Energy decay, describing the leakage of system energy to the environmental bath, is a universal behavior in oscillators. It has been utilized to elucidate the energy transfer between vibrational modes of a single resonator. In coupled resonators, achieving an ultra-low coupling rate is essential for directly observing the interaction of energy between resonators and the environmental bath. In this study, we observe significant periodic transient beating phenomenon by analyzing the transient responses of a coupled nonlinear resonator system with a mechanical coupling rate of only 9.6 Hz. This ultra-low coupling rate reveals a hybrid energy manipulation arising from Duffing nonlinearity and vibration localization. The energy transfer rate is impacted by asymmetry-induced energy localization and enhanced by nonlinearity. Time-resolved eigenstates, characterized by amplitude ratios, are employed as a quantitative tool to uncover the energy transfer and localization in coupled resonators under nonlinear Duffing operations. This study opens new possibilities to manipulate energy transfer, to probe energy localization, and to develop high-precision sensors based on coupled micromechanical resonators.
DOI: 10.17632/rvcdw289vm
title: Earthquakes NW of Targu Jiu city (Romania) located using JHD technique

description: Location data was obtained using the Joint Hypocenter Determination (JHD) technique for the earthquakes recorded NW of Targu Jiu city (Gorj region, Romania), approximately between 23.0 and 23.4 longitude E and 45.0 and 45.3 latitude N. The catalogue contains events recorded before the sequence of 2023 (since 10/01/2015) and during the sequence (between 13/02/2023 and 29/10/2023), a total of 4279 events. 
Compared with version 1 of the catalogue, this version contains the following modifications: 5 additional events, removal of a duplicate event (17/03/2023 14:23:28) and inclusion of the local magnitude parameter.

Header description: 
DATE – event date 
TIME- event time (UTC) 
LAT – latitude (N) 
LON – longitude (E) 
DEPTH – hypocentre depth (in km) 
RMS – root mean square value (in s) 
NS – number of stations used in location 
GAP - the gap in azimuth coverage (degrees) 
ML - local magnitude 

Depth value with index "f" means fixed value (no convergence on depth).
DOI: 10.6084/m9.figshare.20146973.v2
title: Social Interaction Test Recording Data

description: Data in pickle format with keys from mouse id to data. For each mouse: data is a dictionary from data type to data array. Data arrays start and end at the same time <br> Key: data <br> 'nac': fiber photometry of dopamine terminal in nucleus accumbens, 1017 Hz <br> 'ts': fiber photometry of dopamine terminal in the tail stiatum, 1017 Hz <br> 's_zone': binary indicator of if mouse was in social interaction zone, 30 Hz <br> 'o_zone': binary indicator of if mouse was in object interaction zone, 30 Hz
DOI: 10.6084/m9.figshare.21253211.v1
title: Assessing habitat connectivity in environmental impact assessment: a case-study in the UK context

description: Ecological connectivity across landscapes is vital for the maintenance of biodiversity and the processes that enable life on earth. Despite this, environmental planning decisions are usually made at the scale of individual projects, failing to account for landscape-scale impacts. Incorporating habitat connectivity analysis in Environmental Impact Assessments (EIAs) could provide an opportunity to address this gap. We present a novel approach to model habitat connectivity in an EIA undertaken for the Heathrow Third Runway Expansion Project, a proposed development in south-east England. Drawing on field data, remote sensing, and species-specific literature reviews, a circuit theory approach was used to assess functional connectivity across the project landscape for grass snakes <i>Natrix helvetica</i> and soprano pipistrelles <i>Pipistrellus pygmaeus</i>. Results indicated key areas for species movement and potential ‘pinch-points’ vulnerable to development impacts. We discuss lessons learnt, potential applications to inform impact assessment, mitigation design, and biodiversity net gain approaches, and further work required to mainstream connectivity analyses in EIA and decision-making.
DOI: 10.17632/jyjbnyz393
title: Mapas Geoambientais do município de Almadina-Bahia/Brasil

description: As técnicas de geoprocessamento podem ser aplicadas em diversos segmentos, dentre elas, questões de planejamento ambiental, através dos estudos geoambientais, indispensáveis para possibilitarem compreender as dinâmicas naturais e os reflexos antrópicos na paisagem. O objetivo deste estudo consiste em analisar as características geoambientais do município de Almadina por meio das aplicações do geoprocessamento, para que possa ser útil ao planejamento ambiental do município. Dessa forma, foi possível gerar um projeto cartográfico, com mapeamentos das variáveis dos aspectos climatológicos, geológicos, geomorfológicos, hidrográficos, pedológicos, e, uso e ocupação do solo da área de estudocom escalas que variam de 1:250 a 5 m. Constatou que a consolidação de dados físico-ambientais existentes foi útil no processo de arranjo, em ambiente de sistemas de informação geográfica, que se tornou possível junto a análises destacadas como potencialidades, fragilidades, e o uso do espaço pelo homem recorrente das formas de ocupação.
DOI: 10.17632/p5d6z4y385
title: Data for: Asymmetric volatility spillovers between economic policy uncertainty and stock markets: Evidence from China

description: EPU and Chinese stock RV
DOI: 10.17632/xmtgm7smnk
title: Applying the Bry-Boschan algorithm to identify turning points in macroeconomic data published at Open Code Community

description: Material published at https://opencodecom.net/
DOI: 10.17632/96cfzcwdmr
title: Optimizing Lordosis Preservation in Monosegmental Lumbar Spondylodesis: Evaluating the Efficacy of a Novel non-invasive Technique Using Intraoperative Hip Hyperextension

description: This study evaluates a new intraoperative technique for lumbar spondylodesis, using hip hyperextension and an inflatable bladder to maintain lordosis. In 100 patients, significant improvements in Distal Lordosis and Sacral Slope were observed, demonstrating the technique’s efficacy in preserving lordosis during spinal fusion.
DOI: 10.17632/b9jbcd7gvz
title: Data for paper - Achieving commercial benefits through AMT implementation: An SD-SEM analysis

description: This repository contains the information that supports the article entitled: Achieving commercial benefits through AMT implementation: An SD-SEM analysis
DOI: 10.6084/m9.figshare.10293041.v1
title: PVC-7 data-subset as a Mesmerize project

description: Please see the attached README for details.OverviewThis dataset contains a portion of the the pvc-7 dataset available on CRCNS.org in the form of a Mesmerize project (mesmerizelab.org). Please see the original dataset for information regarding the experiment. http://dx.doi.org/10.6080/K0C8276GWe are not affiliated with the authors of the original dataset who did the experiment. The purpose of this sub-dataset is to illustrate an application of Mesmerize.Opening the datasetThe dataset is compresed in tar archive with gzip compression. Decompression can take a while, you may get better performance if you read from a different filesystem than the one that you write to. I recommend using a fast filesystem to store the decompressed data since the image data is large.<strong><br></strong><strong>pigz</strong> should be faster for decompression compared to standard tar. For Ubuntu & Debian based distros you can install pigz through apt. For other distros please check your repositories.<br><code>sudo apt install pigz</code><br>On Mac OSX you can install pigz through brew. See this: https://brewinstall.org/Install-pigz-on-Mac-with-Brew/<br>Decompressing:<code><br></code><code>pigz -dc pvc7_subdataset_mesmerize.tar.gz | tar -xf</code><br>If you cannot install pigz you can decompress with tar. This may take a long time.<code><br></code><code>tar xvzf pvc7_subdataset_mesmerize.tar.gz</code><br>This will probably decompress into a directory called "share". Navigate to <code>share/data/temp/kushal</code> and you should see the project directory "pvc7_subdataset_mesmerize".Once decompressed, you can explore the dataset using Mesmerize. Simply open the Project Directory through the Mesmerize Welcome Window (the window that you are presented with when you launch Mesmerize). You will see the available analysis flowcharts and plots similar to this: http://www.mesmerizelab.org/Overview.html#welcome-windowDouble click on a flowchart or plot to open it. See the "Flowchart" and "Plots" sections below for details.You can explore individual project samples by using the Project Browser and double-clicking on the samples of interest. Note that the image sequence is large (~50GB) so make sure you have enough RAM available if you want to view it.
DOI: 10.17632/nhyk845rpb
title: Supplementary Tables: Effects of Formalin Fixation on Ex Vivo Confocal Microscopy imaging: Towards Rapid Pathology

description: Table 1: Tissue characteristics and patient demographics Table 2: Change in tissue size and laser intensities from baseline fresh imaging (TP0) to formalin fixation across time-points (TP1-TP9)
DOI: 10.17632/y8vr9b9sxj
title: Green Cities Dataset (1984-2020)

description: The Green Cities research & publication dataset, which was indexed by Scopus from 1984 to 2020. The dataset contains data authors, authors ID Scopus, title, year, source title, volume, issue, article number in Scopus, DOI, link, affiliation, abstract, index keywords, references, Correspondence Address, editors, publisher, conference name, conference date, conference code, ISSN, language, document type, access type, and EID.
DOI: 10.17632/c7r7dw9p42
title: Pan-cancer analysis of human endogenous retroviruses and KRAB zinc-finger proteins

description: Summary: Gene expression aberration is a hallmark of cancers, but the mechanisms underlying such aberrations remain unclear. Human endogenous retroviruses (HERVs) are genomic repetitive elements that potentially function as enhancers. Since numerous HERVs are epigenetically activated in tumors, their activation could cause global gene expression aberrations in tumors. To understand the roles of HERV-derived enhancers in cancers, we performed a pan-cancer analysis focusing on the enhancer activity of HERVs using The Cancer Genome Atlas (TCGA) and Cancer Cell Line Encyclopedia (CCLE) datasets. We show that HERV activation in tumors leads to the upregulation of hundreds of transcriptional suppressors, namely Krüppel-associated box domain-containing zinc-finger family proteins (KZFPs). KZFP genes are preferentially encoded nearby the activated HERVs in tumors and transcriptionally regulated by these adjacent HERVs. Increased HERV and KZFP expression in tumors was associated with better disease conditions. Increased KZFP expression in cancer cells altered the expression of genes related to the cell cycle and cell-matrix adhesion and suppressed cellular growth, migration, and invasion abilities. Our data suggest that HERV activation in tumors drives the synchronized elevation of KZFP expression, presumably leading to tumor suppression. The related computer codes are available via the GitHub repository (https://github.com/TheSatoLab/HERV_Pan-cancer_analysis). Reference: Endogenous retroviruses drive KRAB zinc-finger protein family expression for tumor suppression. Jumpei Ito†, Izumi Kimura†, Andrew Soper, Alexandre Coudray, Yoshio Koyanagi, Hirofumi Nakaoka, Ituro Inoue, Priscilla Turelli, Didier Trono, and Kei Sato (2020) Science Advances.
DOI: 10.17632/j5n93z3p7y
title: Dual modes of ZFC3H1 confers selectivity in nuclear RNA sorting. Fan et al.

description: Raw data files for the manuscript titled - "Dual modes of ZFC3H1 confers selectivity in nuclear RNA sorting"
DOI: 10.17632/8b57pz6bpj
title: Fast vocal-motor tracking of escaping prey in echolocating bats

description: This repository contains:
- data and Matlab code to reconstruct the two figures of this paper &
- data and R code to conduct the statistical analysis of this paper.
DOI: 10.17632/k2vxkhg34d
title: Rheumatoid arthritis and interstitial lung disease: new perspectives from a univariable and multivariable Mendelian randomization study

description: supplementary materials
DOI: 10.17632/5b4477386w
title: Data for: A proteomic signature for CNS adaptations to the valence of environmental stimulation

description: Proteomics raw data for both the hippocampus and frontro-ventral areas.
DOI: 10.17632/79zbwrdsxk
title: Phosphorus removal characteristics in agricultural ditches of different orders

description: The data related to: A meta-analysis of phosphorus removal characteristics and key influencing factors in agricultural ditches of different orders
DOI: 10.17632/bggz8pzxcf
title: smFISH data for Mol. Cell: NORAD, MALAT1 and oligo-dT probes; siNT set1
DOI: 10.17632/n4mkm7k857
title: Data for: Evaluation of Executive Functions and Everyday Life for People with Severe Mental Illness: A Systematic Review
DOI: 10.17632/z8z3yvkv9g
title: Standard Operating Procedures for an in vitro MMR assay

description: Standard Operating Procedures (SOP) for nuclear proteins extraction, HEK293T cells transfection, whole cell protein extraction, mismatched plasmid substrate generation and in vitro MMR assay. Protocols were optimized and validated in González-Acosta et al 2019 (title of the manuscript: Validation of an in vitro mismatch repair assay used in the functional characterization of mismatch repair variants).
DOI: 10.6084/m9.figshare.25357006.v1
title: dataset.xlsx

description: In this work, we developed five recombinant attenuated <i>Salmonella</i> typhimurium vaccine (RASV) strains, namely rSC0130(pS-rRS01790), rSC0130(pS-rBMP), rSC0130(pS-rGrpE), rSC0130(pS-rRS00900), and rSC0130(pS-rRS00275). They induced specific humoral, mucosal, and cellular immune responses, which facilitates host resistance to <i>M. synoviae</i>.
DOI: 10.17632/yhc6tg2b2v
title: LINF_180008300

description: DnaJ domain-containing protein | JDP23 | J23; Leishmania infantum (strain JPCM5)
DOI: 10.17632/vk6vyp7s62
title: Dataset on the predictors for Academic Performance in a Blended Learning Environment in Namibia

description: A random sampling technique was used to select second to fourth year undergraduate nursing students at a university campus in Namibia. Data collection was done through a Google online questionnaire. Participants were thoroughly screened to determine their eligibility for inclusion in the study, and were informed of the study's procedures. Written consent was obtained from those who agreed to participate.
DOI: 10.6084/m9.figshare.8869784.v1
title: Whole Slide Image of Canine Mast Cell Tumor, ID 31

description: Whole Slide Image of Canine Mast Cell Tumor, part of the MITOS_WSI_CCMCT data set.
DOI: 10.15468/dl.jr52s3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platytroctes Günther, 1878",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((14.3361 -25.1213,14.3389 -25.1504,17.9648 -25.1504,17.9648 -16.1504,11.2727 -16.1504,11.2674 -18.0072,11.5829 -18.7133,12.1645 -19.4011,13.5129 -22.0148,13.9862 -22.5966,13.9591 -24.1097,14.3361 -25.1213))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012968-250525065834625/datasets/export for details.
DOI: 10.17632/btc49z9789
title: Acidogenic Fermentation Dataset

description: Thermal and alkaline sludge pre-treatment for the production of volatile fatty acids in acidogenic fermentation processes for the valorization of cheese whey.
DOI: 10.17632/ds4hwchkp7
title: Database of the 2023 seismic sequence recorded in Gorj area (Romania)

description: An intense seismic sequence occurred in 2023 in Gorj area (Romania), part of the Central Southern Carpathians seismic zone, having a doublet as main shocks. The first one, with a local magnitude of 5.2, was recorded on February 13 at 14:58:09 UTC, and the second one, with a local magnitude of 5.7, was recorded the next day at 13:16:52 UTC. The data was processed using recordings from the Romania Seismic Network [1] and AdriaArray Temporary Network [2, 3]. 
This database contains the parameters of the two main shocks and over 4000 aftershocks as recorded and located up to 31/12/2023.

The table includes a column which represents the number of seismic phases used to locate the event (Nph), a column that indicates the number of seismic stations used to locate the event (Nst), and a column that specifies the number of stations used in computing the local magnitude (ML) of the event (Nmg).
DOI: 10.17632/kvst5nxtm9
title: Workplace factors and burnout in Brazilian anaesthesiologists

description: There is a high prevalence of burnout among anesthesiologists, which may affect their mental health and safety in clinical anesthesia practice. Despite this, there is limited knowledge about workplace factors associated with burnout among anesthesiologists, and there is a lack of interventional studies focusing on the environment. Therefore, we designed a cross-sectional study of Brazilian anesthesiologists to assess workplace factors related to burnout syndrome and its dimensions. The survey included sample characteristics, the Maslach Burnout Inventory - Human Services Survey for Medical Personnel, and a 'job difficulty score.' Bivariate and multivariate Poisson regression models calculated the prevalence ratios (PR) and assessed the relationship between variables. The response rate was 11.11% (973/8755). Burnout prevalence was 7.2%. The prevalence rates of high emotional exhaustion, high depersonalization, and low personal accomplishment were 28%, 10.9%, and 17.8%, respectively. Burnout was associated with strained relationships (PR 3.05, 1.64-5.68, p= 0.00), feeling disrespected at work (PR 2.45, 1.37-4.40, p= 0.00) and scoring at the 'job difficulty score' (PR 1.26, 1.16-1.37, p= 0.00). Emotional exhaustion was linked to productivity pressure (PR 1.34, 1.01-1.78, p= 0.46), working sick because of staff shortages (PR 1.67, 1.22-2.30, p= 0.00), moral harassment (PR 1.54, 1.15-2.05, p= 0.00), strained relationships (PR 2.09, 1.55-2.84, p= 0.00), conflict of values (PR 1.42, 1.05-1.92, p= 0.02), managing patients' airways during the COVID-19 pandemic (PR 1.52, 1.06-2.18, p= 0.02) and scoring at the 'job difficulty score' (PR 1.15, 1.10-1.2, p= 0.00). Depersonalization was related to strained relationships (PR 2.30, 1.41-3.78, p= 0.00), feeling disrespected at work (PR 1.87, 1.16-3.02, p= 0.01), and scoring at the 'job difficulty score' (PR 1.21, 1.13-1.29, p= 0.00). The low personal accomplishment related to not having access to decisions that affect the workplace (PR 1.27, 1.02-1.57, p= 0.02), working part-time in public and part-time in private hospitals (PR 0.78, 0.62-0.98, p= 0.03) and scoring the "job difficulty score" (PR 1.26, 1.16-1.37, p= 0.00). Overall, the workplace has distinct effects on each burnout component, and mapping this information will allow for the design of customized interventional studies in anesthesia.
DOI: 10.25378/janelia.26506561.v1
title: Refined, automatic nuclei segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of isolated murine pancreatic islets (jrc_mus-pancreas-3)

description: <br><b>Segmentation description</b>: Nuclei segmentations in jrc_mus-pancreas-3 using Cellpose 3.0.9 with cursory manual corrections.<b>Software</b>: Cellpose 3.0.9<b>Software DOI</b>: https://doi.org/10.1038/s41592-022-01663-4<b>Prediction Duration (seconds)</b>: 72.71<b>GPU</b>: NVIDIA TITAN RTX<b>RAM</b>: 251.0 GiB<b>Label voxel size (nm)</b>: 128 x 128 x 128 (x, y, z)<b>Reconstructed data dimensions (µm)</b>: 20 x 20 x 8 (X, Y, Z)<b>Classes annotated</b>: Nucleus<b>Source dataset (EM) ID</b>: jrc_mus-pancreas-3<b>Source dataset (EM) voxel size (nm)</b>: 4.0 x 4.0 x 4.0 (X, Y, Z)<b>Source dataset (EM) data dimensions (µm)</b>: 20 x 20 x 8 (X, Y, Z)<b>Source dataset (EM) DOI</b>: https://doi.org/10.25378/janelia.19196585<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-pancreas-3/jrc_mus-pancreas-3.zarr/recon-1/labels/inference/segmentations/nuc/<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-pancreas-3
DOI: 10.6084/m9.figshare.7231298.v1
title: 4 plant nitrogen concentration

description: plant nitrogen concentration
DOI: 10.6084/m9.figshare.c.3833362_d4.v1
title: Additional file 4 of Common and phylogenetically widespread coding for peptides by bacterial small RNAs

description: BLAST hits for sRNA ORFs. (TXT 29 kb)
DOI: 10.17632/cydmwsfztj
title: A Map of Human Type 1 Diabetes Progression by Imaging Mass Cytometry

description: Data related to the publication: "A Map of Human Type 1 Diabetes Progression by Imaging Mass Cytometry". Damond N, Engler S, Zanotelli VRT, Schapiro D, Wasserfall CH, Kusmartseva I, Nick HS, Thorel F, Herrera PL, Atkinson MA and Bodenmiller B. Cell Metab. 2019 Mar 5;29(3):755-768.e5. https://doi.org/10.1016/j.cmet.2018.11.014 We used imaging mass cytometry to simultaneously image 37 biomarkers with single-cell and spatial resolution in pancreas sections from 12 human donors at different stages of type 1 diabetes. CODE: - Python script for coordinate transformation - Functions for custom histoCAT neighborhood analysis DATA: - Single-cell data - Islet-level data - Cell type information - Cell relationships (cell-cell neighborhoods and cell-islet relationships) - Donors and image metadata. - Subset containing the data for 100 images from 3 donors IMAGES: - Image stacks (37 channels) for all donors (one .7z file per donor, numbers indicate nPOD case IDs) - Cell masks - Panel file with information related to antibodies and metal tags - Metadata file linking donor information to images - Metadata file linking image stack slices and panel information - Subset containing 100 images from 3 donors