cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5285/62fe92d8-db54-4285-9617-573e77a55c4b
title: Physicochemical parameters of Chennai and Pondicherry water samples near antimicrobial manufacturing sites, India, 2023-2024

description: These datasets contain information about the physicochemical properties of water samples taken from Pondicherry and Chennai in 2023 and 2024. Water samples were collected from river, lake, canal and tank water bodies in Pondicherry and Chennai, with locations selected due to their proximity to antimicrobial manufacturing sites. The physicochemical properties of each sample were analysed to determine water quality at each site and how this may be impacted by local antimicrobial pollution. Variables such as; temperature, oxidation reduction potential, salinity, pH, dissolved oxygen content, conductivity, resistivity, total dissolved solids, atmospheric pressure and seawater sigma were accounted for.
description: Samples were collected following a standardized operating procedure mutually agreed upon by the collaborating partners. For water samples, collection was performed at depths ranging from 1 to 5 meters using a sterile container attached to a pulley system. Control samples were collected from upstream sites selected to represent areas unaffected by pollution from manufacturing sources.  All samples were collected in triplicates to ensure reproducibility and statistical reliability with composite samples created from three sampling points in each location. Duplicate samples were also randomly collected as part of quality control. 

Parameters were measured in situ using a portable multiparameter Aquaprobe AP-200 with a GPS Aquameter (Aquaread AP 2000).  Initial data entries were recorded manually on paper and subsequently digitized into Excel spreadsheets. No imputation or gap-filling procedures were applied to the dataset. In cases where certain parameters exhibited readings below the detection threshold, the measurement units automatically shifted to a lower metric scale. For example, dissolved oxygen concentrations were recorded in mg/L by default but were represented in µg/L for particularly low-concentration samples. For the sake of consistency and uniformity across the dataset, all such values were converted back to the default unit of mg/L. 

Samples were transported to the laboratory on the same day in a refrigerated isothermal container and stored at −20 °C until analysis to preserve their integrity. Upon arrival, the samples were processed immediately for both culture-based microbiological analyses and metagenomic DNA extraction, thereby maintaining sample freshness and minimizing potential degradation. Bacterial isolates obtained from each sampling site were preserved as glycerol stocks and stored at −80°C to maintain viability for future analyses.

Due to a lack of water at the site because of warm conditions, no water samples were collected from PSL10 in 2023. The levels were similarly low the following year, so this site was excluded from water and physicochemical analysis.
DOI: 10.5285/722e45d2-0034-43ea-a4af-c4bfcc337ef0
title: Survival and virulence of Candida auris under selected environmental stress

description: This dataset presents the results of the evaluation of the potential of Candida auris strains to survive selected environmental stress. Cells of Candida auris strains were exposed to selected environmental stress including environmental UV and low cycling temperature regimes in simulated environments and their survival was quantified by estimating the viability of exposed cells at intervals. The impact of exposure to environmental stress on the virulence of C. auris cells was also evaluated based on their virulence in Galleria mellonella larvae. The impact of pre-exposure to clinical and environmentally relevant temperatures on the susceptibility of C. auris strains to medical and agricultural azoles was also evaluated. 

The work was supported by the Natural Environment Research Council (Grant NE/V005847/1)
description: This dataset was collected from microcosm experiments to evaluate the potential of Candida auris to survive selected environmental stress. The viability of Candida auris strains was estimated based on their colony-forming units after exposure to environmental UV stress or low cycling temperature. The impact of selected environmental stress on the virulence of Candida auris was also evaluated based on the survival of Galleria mellonella larvae infected with Candida auris cells exposed to selected stress compared to the survival of Galleria mellonella larvae infected with Candida auris cells not exposed to environmental stress. The impact of pre-exposure to different temperatures on the antifungal susceptibility of Candida auris was also evaluated by comparing the colony-forming units of Candida auris cells pre-exposed to different temperatures after treatment with different concentrations of fluconazole or difenoconazole. To ensure the quality of data generated, each experiment inluded at least three replicates and experimental controls.
DOI: 10.5285/ea9811f4-5856-4a7e-bbe6-dcea9c115ea2
title: Denitrification rates in seagrasses and mudflats at six coastal sites in England, December 2024-February 2025

description: We surveyed two seagrass beds and two mudflats in each of six coastal sites in England (Holy Island, Blackwater, Thames, Chichester, Plymouth, Morecambe) between December 2024 and March 2025 to characterise national differences in denitrification rates and their relationship with potential drivers.
A key ecosystem service in coastal systems is the remediation of nutrient pollution through sediment burial, vegetative uptake and microbial processing. Denitrification is a facultative anaerobic process where microbial activity transforms nitrate (NO3-), which in high concentrations can be environmentally harmful, into the environmentally benign dinitrogen gas (N2). Denitrification's magnitude is considered particularly important in saltmarsh systems compared to other habitats, although an intermediate product, nitrous oxide (N2O), can also be given off and contribute to climate change.
This data accompanies the technical report "Denitrification dynamics and relationships with potential drivers across English saltmarshes, seagrass beds, and mudflats: Capturing national variation in space and time"
description: We surveyed two seagrass beds and two mudflats in each of six coastal sites in England (Holy Island, Blackwater, Thames, Chichester, Plymouth, Morecambe) between December 2024 and March 2025 to characterise national differences in denitrification rates and their relationship with potential drivers.
We used a combination of classic vegetation survey techniques, core extraction, and subsequent laboratory processing to quantify relative variation in denitrification rates across environmental contexts.
DOI: 10.5285/26efc506-a265-4bb1-8296-d6988ab8d714
title: Denitrification rates of saltmarshes in six estuaries in England, September-November 2024

description: We surveyed two salt marshes in each of six estuaries (Solway, Morecambe Bay, Ribble, Humber, Blackwater, Chichester) between September and November 2024 to characterise national differences in denitrification rates and their relationship with potential drivers.
A key ecosystem service in coastal systems is the remediation of nutrient pollution through sediment burial, vegetative uptake and microbial processing. Denitrification is a facultative anaerobic process where microbial activity transforms nitrate (NO3-), which in high concentrations can be environmentally harmful, into the environmentally benign dinitrogen gas (N2). Denitrification's magnitude is considered particularly important in saltmarsh systems compared to other habitats, although an intermediate product, nitrous oxide (N2O), can also be given off and contribute to climate change.
description: We surveyed two salt marshes in each of six estuaries (Solway, Morecambe Bay, Ribble, Humber, Blackwater, Chichester) between September and November 2024 to characterise national differences in denitrification rates and their relationship with potential drivers.
A combination of classic vegetation survey techniques, core extraction, and subsequent laboratory processing were used to quantify relative variation in denitrification rates across environmental contexts.
DOI: 10.15468/dl.h4eqer
title: Occurrence Download

description: A dataset containing 125103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "IucnRedListCategory is EN",
 "OccurrenceStatus is Present",
 "TaxonKey is Numenius madagascariensis"
 ]
}

 The dataset includes 125103 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016492-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j8ttpa
title: Occurrence Download

description: A dataset containing 156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Primula atrodentata"
 ]
}

 The dataset includes 156 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016575-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18506913
title: Frameshift mutations  in the first coding exon of BCOR, a ncPRC1.1 component, do not result in its functional knockout in lymphoma cell lines
DOI: 10.15468/dl.2j76q7
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Metapenaeopsis liui"
 ]
}

 The dataset includes 74 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016577-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c50p0x468
title: MassIVE MSV000100748 - Targeted metabolomics of SCFAs and OAs: inter-laboratory comparison
title: LCMS data from 3NPH derivatized fecal extracts of gnotobiotic mice, generated for interlaboratory comparison of a targeted method for short chain fatty acids and organic acids quantitation.
DOI: 10.17026/ar/mca0bn
title: Archeologisch bureauonderzoek plangebied Fortlaan 9 te Bussum

description: Het bureauonderzoek heeft uitgewezen dat in de ondergrond van het plangebied fluvioglaciale sedimenten zijn afgezet (smeltwaterafzettingen), die bestaan uit gelaagd, grindhoudend grof zand. Hierop is tijdens het Weichselien een dekzandpakket afgezet. Gedurende het Holoceen begon de veenvorming. Het veen bereikte gedurende de IJzertijd het plangebied. Het veen zal tijdens de Late Middeleeuwen en Nieuwe tijd grotendeels zijn afgegraven ten behoeve van turfwinning. In de bodem heeft zich naar verwachting een veldpodzolgrond ontwikkeld (Hn21). Op het AHN is te zien dat de bodem in het plangebied geëgaliseerd tijdens de aanleg van de woonwijk. In het plangebied zal het terrein waarschijnlijk zijn opgehoogd. Hoe hoog dit opgebracht pakket is, is niet duidelijk. Indien in het plangebied sprake is van een opgebracht pakket, kunnen eventuele archeologische waarden beschermd zijn.
Het plangebied is voor zover kon worden achterhaald in historische tijden niet bebouwd geweest tot 1915. Tot deze tijd is het in gebruik geweest als bouwland en bos voor hakhout. In 1915 werd de Emmaschool geopend in het plangebied. Deze school is in 1985 vervangen voor de huidige school. Als gevolg van het gebruik als bouwland zal de bodem naar verwachting tot maximaal 40 cm (bouwvoor) zijn geroerd. De verstoring als gevolg van de bebouwing zal naar verwachting groter zijn, mede door het uitgraven van de fundamenten en een kelder en het leggen van kabels en leidingen. Buiten de contouren van de scholen kan nog een intacte bodem aanwezig zijn.
DOI: 10.15468/dl.uq6jks
title: Occurrence Download

description: A dataset containing 1740 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.2_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Picus canus",
 "Year is 2022"
 ]
}

 The dataset includes 1740 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016578-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17670457
title: Supplementary material for "Polymer extrusion processes in tire manufacturing: a systematic review and bibliometric analysis"

description: The supplementary materials include: (i) the enriched Scopus-Web of Science dataset analysed in this study; (ii) the Python pipeline used for data cleaning, metadata enrichment, and bibliometric analysis; (iii) the rule-based Python script used to construct the broad tire-extrusion subset and the technology-focused strict and technology-dense subsets; and (iv) additional sensitivity figures, including the DE thematic map for the technology-dense subset and the full list of frequent keywords.
DOI: 10.5285/aa82fa99-d38c-47a7-9405-f0773edcd7a8
title: Water chemistry data for the River Frome, Dorset, UK, from 1965-2009

description: Data from weekly water quality monitoring of the River Frome at East Stoke, Dorset (National Grid Reference SY 867868). The dataset consists of nitrate, soluble reactive phosphorus, dissolved silicon, pH, alkalinity, potassium, sodium, calcium and magnesium concentrations for the entire 44-year monitoring period, with total phosphorus, total dissolved phosphorus, electrical conductivity, water temperature, chloride, sulphate and ammonium concentration data for periods within the monitoring period. Daily average river flow on the day of sampling (extracted from the National River Flow Archive) is included. 
description: Chemistry data generated by FBA, IFE and CEH staff over last 44 years, including Harry Casey, Alan House and Jim Smith. Final project manager was Mike Bowes (CEH). River flow data supplied by 'UK National River Flow Archive'. Analytical methods are in the supporting paper. Mainly weekly sampling but some sample dates missing particularly after 1997. Data validated and erroneous values removed. Some total phosphorus data has been removed between 2004 and 2006 due to analytical errors caused by change in methodology. Between 2004 and 2006 some duplicate samples were taken to obtain correct TP data.
DOI: 10.5281/zenodo.18506816
title: Supplementary material for "Polymer extrusion processes in tire manufacturing: a systematic review and bibliometric analysis"

description: The supplementary materials include: (i) the enriched Scopus-Web of Science dataset analysed in this study; (ii) the Python pipeline used for data cleaning, metadata enrichment, and bibliometric analysis; (iii) the rule-based Python script used to construct the broad tire-extrusion subset and the technology-focused strict and technology-dense subsets; and (iv) additional sensitivity figures, including the DE thematic map for the technology-dense subset and the full list of frequent keywords.
DOI: 10.5281/zenodo.18485938
title: Evolution of Air-Sea Fluxes in Modeled Long-Lived Mesoscale Eddies in the South Atlantic Ocean

description: Datasets in this repository are generated from BIOPERIANT12-CNCLNG01 model and are part of the manuscript entitled: "Evolution of Air-Sea Fluxes in Modeled Long-Lived Mesoscale Eddies in the South Atlantic Ocean" 

 

Abstract

Mesoscale eddies modify physical and biogeochemical properties, facilitating the exchange of heat and CO2 between the surface, mixed-layer and ocean interior. Most state-of-the-art Earth System Models fail to resolve mesoscale processes (10 - 100km) due to computational constraints, thus contributing to uncertainties in current and future projections of ocean heat and CO2 fluxes. While recent advances have shown progress in understanding regional and seasonal mean characteristics of eddies, their impact on air-sea fluxes over the eddy life cycle remains poorly understood. We use a high-resolution (1/12°) ocean physical-biogeochemical (NEMO-PISCES) model to investigate the temporal evolution air-sea heat and CO2 fluxes in long-lived (> 90 days) eddies in the South Atlantic Ocean. These eddies have varying lifespans, different propagation pathways, regional and seasonal dynamics. Examining these features reveals important nuances in their impact on air-sea heat and CO2 fluxes. We find a high occurrence (~30%) of “abnormal eddies”, defined as cold surface anticyclonic and warm surface cyclonic eddies, emerging more frequently in longer-lived eddies, which can weaken or reverse the direction of air-sea fluxes. Long-lived anticyclonic eddies sustain heat fluxes to the atmosphere and reduced CO2 uptake throughout the eddy life cycle. In contrast, cyclonic eddies in the South-East Atlantic exhibit declining heat uptake with time, highlighting an asymmetry between eddies of different polarities. This asymmetry extends to other regions of the South Atlantic when considering CO2 fluxes. Understanding these dynamics is necessary to improve air-sea flux projections, inform mesoscale parameterizations that influence the carbon-climate sensitivity of the Southern Ocean.
DOI: 10.5281/zenodo.18485937
title: Evolution of Air-Sea Fluxes in Modeled Long-Lived Mesoscale Eddies in the South Atlantic Ocean

description: Datasets in this repository are generated from BIOPERIANT12-CNCLNG01 model and are part of the manuscript entitled: "Evolution of Air-Sea Fluxes in Modeled Long-Lived Mesoscale Eddies in the South Atlantic Ocean" 

 

Abstract

Mesoscale eddies modify physical and biogeochemical properties, facilitating the exchange of heat and CO2 between the surface, mixed-layer and ocean interior. Most state-of-the-art Earth System Models fail to resolve mesoscale processes (10 - 100km) due to computational constraints, thus contributing to uncertainties in current and future projections of ocean heat and CO2 fluxes. While recent advances have shown progress in understanding regional and seasonal mean characteristics of eddies, their impact on air-sea fluxes over the eddy life cycle remains poorly understood. We use a high-resolution (1/12°) ocean physical-biogeochemical (NEMO-PISCES) model to investigate the temporal evolution air-sea heat and CO2 fluxes in long-lived (> 90 days) eddies in the South Atlantic Ocean. These eddies have varying lifespans, different propagation pathways, regional and seasonal dynamics. Examining these features reveals important nuances in their impact on air-sea heat and CO2 fluxes. We find a high occurrence (~30%) of “abnormal eddies”, defined as cold surface anticyclonic and warm surface cyclonic eddies, emerging more frequently in longer-lived eddies, which can weaken or reverse the direction of air-sea fluxes. Long-lived anticyclonic eddies sustain heat fluxes to the atmosphere and reduced CO2 uptake throughout the eddy life cycle. In contrast, cyclonic eddies in the South-East Atlantic exhibit declining heat uptake with time, highlighting an asymmetry between eddies of different polarities. This asymmetry extends to other regions of the South Atlantic when considering CO2 fluxes. Understanding these dynamics is necessary to improve air-sea flux projections, inform mesoscale parameterizations that influence the carbon-climate sensitivity of the Southern Ocean.
DOI: 10.5285/17b9c4f7-1c30-4b6f-b2fe-f7780159939c
title: Historic Gridded Potential Evapotranspiration (PET) based on temperature-based equation McGuinness-Bordne calibrated for the UK (1891-2015)

description: Monthly and daily 5km gridded Potential Evapotranspiration (PET) data for the UK. PET was derived using temperature-based equation from McGuinness-Bordne calibrated for the UK (calibration period: 1961-1990). The units are mm/day for daily PET and mm/month for monthly PET. The dataset covers the period from 1891-2015.

For both subsets (daily and monthly), a set of performance metrics were calculated, which are provided together with the PET grids. The list of metrics provided is: Mean Absolute Percent Error (MAPE), Nash-Sutcliffe Efficiency (NSE), Kling-Gupta Efficiency (KGE), Correlation Coefficient, Variability Ratio (VR), Bias Ratio and monthly MAPE.
description: Potential Evapotranspiration (PET) for this dataset was derived using temperature-based equation from McGuinness-Bordne (Oudin et al., 2005, doi: 10.1016/j.jhydrol.2004.08.026). The temperature used to derive the PET grids are the 5km mean temperature grids provided by the Met Office, which were derived using the same methodology as UKCP09 dataset (Perry and Hollis, 2005, doi:10.1002/joc.1161). The monthly temperature data was then disaggregated to daily temperature time series using pchip (piecewise cubic hermite interpolating polynomial) method. McGuinness-Bordne temperature-based Potential Evapotranspiration (PET) equation was calibrated for the UK (calibration period: 1961-1990). This calibrated version was then applied to produce the gridded daily PET. Monthly totals were derived from the daily PET grids to produce monthly PET grids. A set of performance metrics (Mean Absolute Percent Error (MAPE), Nash-Sutcliffe Efficiency (NSE), Kling-Gupta Efficiency (KGE), Correlation Coefficient, Variability Ratio (VR), Bias Ratio and monthly MAPE) were calculate to estimate the goodness-of-fit of the McGuinness-Bordne equation. These metrics are provided as grids as part of the dataset, and can be used as a measure of the spatial variability of the quality of the data.
DOI: 10.5281/zenodo.18507072
title: TANA VAZNI INDEKSI VA FIB-4 INDEKSI ASOSIDA JIGAR FIBROZLANISHINI ERTA BAHOLASH: ADABIYOTLAR TAHLILI

description: Ushbu maqolada 18 yoshdan katta bemorlarda tana vazni indeksi (BMI) va FIB-4 indeksi o‘rtasidagi o‘zaro bog‘liqlik masalasi jigar fibrozlanishini erta, invaziv bo‘lmagan baholash nuqtayi nazaridan ilmiy adabiyotlar tahlili asosida yoritib beriladi. Zamonaviy tadqiqotlar shuni ko‘rsatadiki, ortiqcha tana vazni va semizlik metabolik buzilishlar orqali jigar parenximasida fibrotik o‘zgarishlarning tezlashuviga olib keladi. FIB-4 indeksi esa oddiy laborator ko‘rsatkichlarga asoslangan holda jigar fibrozlanish darajasini baholash imkonini beruvchi ishonchli skrining vositasi sifatida keng qo‘llanilmoqda. Maqolada BMI oshishi bilan FIB-4 indeksining diagnostik ahamiyati, ularning o‘zaro korrelyatsiyasi hamda klinik amaliyotdagi prognozlash imkoniyatlari tahlil qilinadi. Adabiyotlar tahlili natijalari BMI va FIB-4 indekslarining birgalikda qo‘llanilishi jigar fibrozini erta aniqlash va xavf guruhidagi bemorlarni tanlab olishda samarali yondashuv ekanligini ko‘rsatadi.
DOI: 10.5281/zenodo.18507071
title: TANA VAZNI INDEKSI VA FIB-4 INDEKSI ASOSIDA JIGAR FIBROZLANISHINI ERTA BAHOLASH: ADABIYOTLAR TAHLILI

description: Ushbu maqolada 18 yoshdan katta bemorlarda tana vazni indeksi (BMI) va FIB-4 indeksi o‘rtasidagi o‘zaro bog‘liqlik masalasi jigar fibrozlanishini erta, invaziv bo‘lmagan baholash nuqtayi nazaridan ilmiy adabiyotlar tahlili asosida yoritib beriladi. Zamonaviy tadqiqotlar shuni ko‘rsatadiki, ortiqcha tana vazni va semizlik metabolik buzilishlar orqali jigar parenximasida fibrotik o‘zgarishlarning tezlashuviga olib keladi. FIB-4 indeksi esa oddiy laborator ko‘rsatkichlarga asoslangan holda jigar fibrozlanish darajasini baholash imkonini beruvchi ishonchli skrining vositasi sifatida keng qo‘llanilmoqda. Maqolada BMI oshishi bilan FIB-4 indeksining diagnostik ahamiyati, ularning o‘zaro korrelyatsiyasi hamda klinik amaliyotdagi prognozlash imkoniyatlari tahlil qilinadi. Adabiyotlar tahlili natijalari BMI va FIB-4 indekslarining birgalikda qo‘llanilishi jigar fibrozini erta aniqlash va xavf guruhidagi bemorlarni tanlab olishda samarali yondashuv ekanligini ko‘rsatadi.