cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5647909
title: AMR Benchmarking dataset - Mapped ReadSets - 1

description: Benchmarking dataset for AMR detection pipelines for assemblies focusing on ESKAPE pathogens in addition to Salmonella. This dataset consists of closed genomes from NCBI where paired-end Illumina data was available. The closed genomes from NCBI are provided in addition to assemblies based on the raw uploaded to NCBI, along with assemblies based on just the reads which mapped correctly to the closed assemblies. Reads were assembled using shovill v. 1.1.0 using SKESA and SPADES. Variants were called using snippy v. 4.6.0 and the mapped reads were extracted bedtools bamtofastq v2.29.2.
DOI: 10.5281/zenodo.5647908
title: AMR Benchmarking dataset - Mapped ReadSets - 1

description: Benchmarking dataset for AMR detection pipelines for assemblies focusing on ESKAPE pathogens in addition to Salmonella. This dataset consists of closed genomes from NCBI where paired-end Illumina data was available. The closed genomes from NCBI are provided in addition to assemblies based on the raw uploaded to NCBI, along with assemblies based on just the reads which mapped correctly to the closed assemblies. Reads were assembled using shovill v. 1.1.0 using SKESA and SPADES. Variants were called using snippy v. 4.6.0 and the mapped reads were extracted bedtools bamtofastq v2.29.2.
DOI: 10.5281/zenodo.5604579
title: AMR Benchmarking dataset - Assemblies

description: Benchmarking dataset for AMR detection pipelines for assemblies focusing on ESKAPE pathogens in addition to Salmonella. This dataset consists of closed genomes from NCBI where paired-end Illumina data was available. The closed genomes from NCBI are provided in addition to assemblies based on the raw uploaded to NCBI, along with assemblies based on just the reads which mapped correctly to the closed assemblies. Reads were assembled using shovill v. 1.1.0 using SKESA and SPADES. Variants were called using snippy v. 4.6.0 and the mapped reads were extracted bedtools bamtofastq v2.29.2.
DOI: 10.5281/zenodo.5604578
title: AMR Benchmarking dataset - Assemblies

description: Benchmarking dataset for AMR detection pipelines for assemblies focusing on ESKAPE pathogens in addition to Salmonella. This dataset consists of closed genomes from NCBI where paired-end Illumina data was available. The closed genomes from NCBI are provided in addition to assemblies based on the raw uploaded to NCBI, along with assemblies based on just the reads which mapped correctly to the closed assemblies. Reads were assembled using shovill v. 1.1.0 using SKESA and SPADES. Variants were called using snippy v. 4.6.0 and the mapped reads were extracted bedtools bamtofastq v2.29.2.
DOI: 10.3886/e116092v1-102842
title: Replication data for: Psychological Pressure in Competitive Environments: Evidence from a Randomized Natural Experiment

description: Emotions can have important effects on performance and socioeconomic outcomes. We study a natural experiment where two teams of professionals compete in a tournament taking turns in a sequence. As the sequential order is determined by the random outcome of a coin flip, the treatment and control groups are determined via explicit randomization. Hence, absent any psychological effects, both teams should have the same probability of winning. Yet, we find a systematic first-mover advantage. Further, professionals are self-aware of their own psychological effects and, when given the chance, they rationally react by systematically taking advantage of these effects. (JEL C93, D03, D82, L83)
DOI: 10.14278/rodare.1286
title: Data publication: Temperature-induced surface faceting of M-plane Al₂O₃: An in-situ GISAXS study

description: -- raw data of GISAXS experiment -- AFM data -- GISAXS simulation files
DOI: 10.14278/rodare.1285
title: Data publication: Temperature-induced surface faceting of M-plane Al₂O₃: An in-situ GISAXS study

description: -- raw data of GISAXS experiment -- AFM data -- GISAXS simulation files
DOI: 10.5281/zenodo.5737387
title: BB4B: Quotes Matrix

description: This is the de-identified BB4B Study Quotes Matrix.
DOI: 10.5281/zenodo.5737386
title: BB4B: Quotes Matrix

description: This is the de-identified BB4B Study Quotes Matrix.
DOI: 10.5281/zenodo.5735415
title: Dataset related to article: "Clusters of Survivors of COVID-19 Associated Acute Respiratory Failure According to Response to Exercise"

description: We provide the raw data used for the following article: Vitacca, M.; Paneroni, M.; Malovini, A.; Carlucci, A.; Binda, C.; Sanci, V.; Ambrosino, N. Clusters of Survivors of COVID-19 Associated Acute Respiratory Failure According to Response to Exercise. <em>Int. J. Environ. Res. Public Health</em> 2021, 18, 11868. <strong>Abstract</strong>: COVID-19 survivors are associated with acute respiratory failure (ARF) and show a high prevalence of impairment in physical performance. The present studied aimed to assess whether we may cluster these individuals according to an exercise test. The presented study is a retrospective analysis of 154 survivors who were admitted to two hospitals of Istituti Clinici Scientifici Maugeri network, Italy. Clinical characteristics, walked distance, heart rate (HR), pulse oximetry (SpO2), dyspnoea, and leg fatigue (Borg scale: Borg-D and Borg-F, respectively) while performing the sixminute walking distance (6MWT) were entered into unsupervised clustering analysis. Multivariate linear regression identified variables that were informative for the set of variables used for cluster definition. Cluster 1 (C1: 86.4% of participants) and Cluster 2 (C2: 13.6%) were identified. Compared to C1, the individuals in C2 were significantly older, showed significantly higher increase in fatigue and in dyspnoea, greater reduction in SpO2, and a lower HRpeak during the test. The need of walking aids, time from admission to acute care hospitals, age, body mass index, endotracheal intubation, baseline HR and baseline Borg-D, and exercise-induced SpO2 change were significantly associated<br> with the variables that were used for cluster definition. Different characteristics and physiological parameters during the 6MWT characterise survivors of COVID-19-associated ARF. These results may help in the management of the long-term effects of the disease.
DOI: 10.5281/zenodo.5735414
title: Dataset related to article: "Clusters of Survivors of COVID-19 Associated Acute Respiratory Failure According to Response to Exercise"

description: We provide the raw data used for the following article: Vitacca, M.; Paneroni, M.; Malovini, A.; Carlucci, A.; Binda, C.; Sanci, V.; Ambrosino, N. Clusters of Survivors of COVID-19 Associated Acute Respiratory Failure According to Response to Exercise. <em>Int. J. Environ. Res. Public Health</em> 2021, 18, 11868. <strong>Abstract</strong>: COVID-19 survivors are associated with acute respiratory failure (ARF) and show a high prevalence of impairment in physical performance. The present studied aimed to assess whether we may cluster these individuals according to an exercise test. The presented study is a retrospective analysis of 154 survivors who were admitted to two hospitals of Istituti Clinici Scientifici Maugeri network, Italy. Clinical characteristics, walked distance, heart rate (HR), pulse oximetry (SpO2), dyspnoea, and leg fatigue (Borg scale: Borg-D and Borg-F, respectively) while performing the sixminute walking distance (6MWT) were entered into unsupervised clustering analysis. Multivariate linear regression identified variables that were informative for the set of variables used for cluster definition. Cluster 1 (C1: 86.4% of participants) and Cluster 2 (C2: 13.6%) were identified. Compared to C1, the individuals in C2 were significantly older, showed significantly higher increase in fatigue and in dyspnoea, greater reduction in SpO2, and a lower HRpeak during the test. The need of walking aids, time from admission to acute care hospitals, age, body mass index, endotracheal intubation, baseline HR and baseline Borg-D, and exercise-induced SpO2 change were significantly associated<br> with the variables that were used for cluster definition. Different characteristics and physiological parameters during the 6MWT characterise survivors of COVID-19-associated ARF. These results may help in the management of the long-term effects of the disease.
DOI: 10.5258/soton/d2038
title: Data supporting the thesis: Advancing New and Emerging Techniques to Facilitate Routine Quality Assessment of Satellite-Derived Vegetation Products

description: Dataset supporting University of Southampton Doctoral Thesis 2021 "Advancing New and Emerging Techniques to Facilitate Routine Quality Assessment of Satellite-Derived Vegetation Products". In situ leaf area index (LAI) and leaf chlorophyll concentration (LCC) measurements over the New Forest in 2016, and time-series of LAI and the green chromatic coordinate (GCC) over Wytham Woods in 2018/19.
DOI: 10.5258/soton/d2040
title: Database of Aerodynamic Measurements of Automotive Underbody Diffusers in the Presence of Rake

description: Database of aerodynamic measurements of an automotive underbody diffuser model, supporting the discussion in Chapter 6 and Appendix A of the accompanying thesis entitled "Aerodynamics and Experimental Optimisation of Automotive Underbody Diffusers in the Presence of Rake." University of Southampton Doctoral Thesis
DOI: 10.5258/soton/d1713
title: Dataset for Enhancing thermoelectric properties of bismuth telluride and germanium telluride thin films for wearable energy harvesting

description: Dataset for paper to be submitted to Thin Solid Films DOI of paper: 10.1016/j.tsf.2021.139015. "Enhancing thermoelectric properties of bismuth telluride and germanium telluride thin films for wearable energy harvesting" Gold open access.
DOI: 10.15468/d5gh86
title: Validation of the names of four species of laelapid mites (Mesostigmata: Laelapidae) parasitic on sigmodontine rodents (Rodentia: Cricetidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lareschi, Marcela, Savchenko, Ekaterina (2021): Validation of the names of four species of laelapid mites (Mesostigmata: Laelapidae) parasitic on sigmodontine rodents (Rodentia: Cricetidae). Zootaxa 5072 (3): 298-300, DOI: https://doi.org/10.11646/zootaxa.5072.3.7
DOI: 10.5281/zenodo.5720438
title: Supplementary material for the paper "Detection and Characterization of Multiple Discontinuities in Cables with Time Domain Reflectometry and Convolutional Neural Networks"

description: This archive contains supplementary material for the paper "Detection and Characterization of Multiple Discontinuities in Cables with Time Domain Reflectometry and Convolutional Neural Networks". In particular, the following data is provided: dataset of labeled simulated TDR signals (1 million samples) dataset of labeled experimental signals (16 samples) trained convolutional neural network model
DOI: 10.5281/zenodo.5720437
title: Supplementary material for the paper "Detection and Characterization of Multiple Discontinuities in Cables with Time Domain Reflectometry and Convolutional Neural Networks"

description: This archive contains supplementary material for the paper "Detection and Characterization of Multiple Discontinuities in Cables with Time Domain Reflectometry and Convolutional Neural Networks". In particular, the following data is provided: dataset of labeled simulated TDR signals (1 million samples) dataset of labeled experimental signals (16 samples) trained convolutional neural network model
DOI: 10.6084/m9.figshare.16882045
title: Supplementary material for "Handlist of Stations of the Ayyubid and Mamluk Communication Systems" by Kurt Franz, published in IHC 181 (2022)

description: These are the supplementary materials for an article published in Islamic History and Civilization 181 entitled 'Handlist of Stations of the Ayyubid and Mamluk Communication Systems', by Kurt Franz, with DOI:10.1163/9789004459717_014<br>The file Franz_Handlist_Tables.xls makes the tables 12.1 and 12.2 and also additional tables S1–S3 available as spreadsheets, the latter ones indicating the routes of each governmental communication system and their minimum distances as the pigeon flies. The same is also offered as earth browser data in the file Franz_Handlist_View.kml. It allows the reader to view stations connected through direct lines so that the respective networks are represented, if not through their routings on the ground then at least in a schematic way. For specifications, see Franz_Handlist_ReadMe.pdf.<br>Abstract:<br>The governmental communication systems of the Ayyubid and Mamluk periods present a model case of central powers venturing to mould the geo-spatial arrangement of their realm and politically master it. It is therefore argued that the infrastructure and workings of these systems are an important source for understanding the interlocking of political history with historical geography. This article takes stock, for the first time, of the entire body of stations. Based on mediaeval lists, the archaeological and epigraphic record, and also remote sensing data, it establishes a geo-referenced handlist of 257 localities that held one or more stations, 315 stations in total. Calling for more system-wide and multi-source investigation, the handlist provides the geo-data basis for future in-depth spatial analysis of the Ayyubids’ and Mamluks’ intelligence backbones.<br>
DOI: 10.21223/e1gogt/wc58zp
title: Table 10 Glycoalkaloid content in B3C3 clones 2016–2017.tab

description: :unav
DOI: 10.21223/e1gogt/jaz5ye
title: Table 11 Organoleptic test in B3C3 clones by locality at harvest with PVS methodology.tab

description: :unav
DOI: 10.21223/e1gogt/nfgasi
title: Table 01 B3C3 potato clones with resistance to LB.tab

description: :unav
DOI: 10.21223/e1gogt/6em27c
title: Table 04 Number of PVS participants in the flowering and harvest stages.tab

description: :unav
DOI: 10.21223/e1gogt/xdx8az
title: Table 02 Sites for experiments in 2016–2017 and 2017–2018.tab

description: :unav
DOI: 10.21223/e1gogt/j6u3ry
title: Table 03 Clones selected in 2016–2017 and tested in 2017–2018.tab

description: :unav
DOI: 10.21223/e1gogt/5deul7
title: Table 06 Ranking of clones at flowering and harvest stages based on the selection criteria prioritised by farmers through the PVS, 2016–2017.tab

description: :unav
DOI: 10.21223/e1gogt/i5zv53
title: Table 05 Main selection criteria, at flowering and harvest stages, identified in PVS trials 2016–2017.tab

description: :unav
DOI: 10.21223/e1gogt
title: Replication Data for: Identification of Elite Potato Clones with Resistance to Late Blight Through Participatory Varietal Selection in Peru

description: Potato is the most important crop in Peru and late blight is the main disease affecting the crop. However, new varieties that are resistant to late blight often lack other traits that farmers and consumers prefer. Using participatory varietal selection, this study seeks to identify clones with high potential to become varieties with resistance to late blight but also feature a high marketable tuber yield and other preferred agronomic traits. During 2016–2017, 36 clones previously selected for high levels of resistance to late blight from population B developed by the International Potato Center, and three varieties used as controls (INIA 302 Amarilis moderately resistant, INIA303 Canchan and Yungay susceptible to late blight), were evaluated in five Peruvian locations. At harvest, five clones were selected based on (i) evaluations made by farmers through Participatory Varietal Selection, (ii) analysis of mixed models and Best Linear Unbiased Predictors for tuber yield, (iii) low glycoalkaloid content in tubers, and (iv) good organoleptic quality. These clones were evaluated again during 2017–2018 in four locations. Resistance to late blight and good marketable tuber yields were identified as the most important criteria for the selection of a new potato variety. The clones CIP308488.92, CIP308495.227 and CIP308478.59 were selected as promising clones having resistance to late blight and tuber yield superior to the local varieties, INIA-303 Canchan, Yungay, as well as good organoleptic quality and low glycoalkaloid content. These clones can be suggested for variety release in similar agroecological environments.
DOI: 10.6084/m9.figshare.17099912
title: NDC-SDG Linkages

description: The NDC-SDG linkage analysis is a comprehensive study, which examines the degree of alignment between the (I)NDCs and the 169 targets of the 2030 Sustainable Development Agenda. Climate action texts were extracted from the NDCs and aligned with relevant targets. The study was carried by WRI to support joint implementation of both the Paris Agreement and the 2030 Agenda.<br><br>https://www.climatewatchdata.org/data-explorer/emission-pathways?emission-pathways-categories=All Selected&emission-pathways-indicators=All Selected&emission-pathways-locations=All Selected&emission-pathways-models=All Selected&emission-pathways-scenarios=All Selected&emission-pathways-subcategories=All Selected&page=1<br>
DOI: 10.5281/zenodo.5742744
title: OME-NGFF: 41744_illum_corrected

description: IDR plate 1751 converted as OME-NGFF v0.1
description: Also available on S3 as https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.1/plates/5966.zarr
DOI: 10.5281/zenodo.5742743
title: OME-NGFF: 41744_illum_corrected

description: IDR plate 1751 converted as OME-NGFF v0.1
description: Also available on S3 as https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.1/plates/5966.zarr
DOI: 10.6084/m9.figshare.7362443
title: Quality of life and needs for rehabilitation in patients with multiple myeloma: The elephant in the room

description: Ninety consecutive patients were included in this cross sectional survey of patients diagnosed with multiple myeloma. The study was approved by the Institute Ethics Committee and informed written consent was obtained. All patients (new and relapsed), irrespective of disease status and duration from diagnosis, underwent baseline evaluation following which they completed a scale exploring their functional status by Barthel mobility index scoring and QOL with the EORTC QOL scale with its myeloma module. The data was split into three subsets. First, newly diagnosed patients (naïve and on 1<sup>st</sup> line treatment) and relapsed categories. Second, according to disease status; and third as per duration from diagnosis (&lt;6 months, 6-12 months, 12-24 months and &gt;24 months). Mean score and frequency (%) was calculated. Comparison of scores between different categories was analyzed.
DOI: 10.6084/m9.figshare.7362443.v2
title: Quality of life and needs for rehabilitation in patients with multiple myeloma: The elephant in the room

description: Ninety consecutive patients were included in this cross sectional survey of patients diagnosed with multiple myeloma. The study was approved by the Institute Ethics Committee and informed written consent was obtained. All patients (new and relapsed), irrespective of disease status and duration from diagnosis, underwent baseline evaluation following which they completed a scale exploring their functional status by Barthel mobility index scoring and QOL with the EORTC QOL scale with its myeloma module. The data was split into three subsets. First, newly diagnosed patients (naïve and on 1<sup>st</sup> line treatment) and relapsed categories. Second, according to disease status; and third as per duration from diagnosis (&lt;6 months, 6-12 months, 12-24 months and &gt;24 months). Mean score and frequency (%) was calculated. Comparison of scores between different categories was analyzed.
DOI: 10.6084/m9.figshare.7362443.v1
title: Appraisal of needs for rehabilitation in patients with multiple myeloma

description: Between November 2014 and January 2016, 90 consecutive patients were included in this cross sectional survey of patients diagnosed with multiple myeloma. The study was approved by the Institute Ethics Committee and informed written consent was obtained. All patients (new and relapsed), irrespective of disease status and duration from diagnosis, underwent baseline evaluation following which they completed a scale exploring their functional status by Barthel mobility index scoring and QOL with the EORTC QOL scale with its myeloma module. The data was split into three subsets. First, newly diagnosed patients (naïve and on 1<sup>st</sup> line treatment) and relapsed categories. Second, according to disease status; and third as per duration from diagnosis (&lt;6 months, 6-12 months, 12-24 months and &gt;24 months). Mean score and frequency (%) was calculated. Comparison of scores between different categories was analyzed.
DOI: 10.5281/zenodo.5744829
title: NDC-SDG Linkages

description: The NDC-SDG linkage analysis is a comprehensive study, which examines the degree of alignment between the (I)NDCs and the 169 targets of the 2030 Sustainable Development Agenda. Climate action texts were extracted from the NDCs and aligned with relevant targets. The study was carried by WRI to support joint implementation of both the Paris Agreement and the 2030 Agenda. https://www.climatewatchdata.org/data-explorer/emission-pathways?emission-pathways-categories=All%20Selected&emission-pathways-indicators=All%20Selected&emission-pathways-locations=All%20Selected&emission-pathways-models=All%20Selected&emission-pathways-scenarios=All%20Selected&emission-pathways-subcategories=All%20Selected&page=1
DOI: 10.5281/zenodo.5744828
title: NDC-SDG Linkages

description: The NDC-SDG linkage analysis is a comprehensive study, which examines the degree of alignment between the (I)NDCs and the 169 targets of the 2030 Sustainable Development Agenda. Climate action texts were extracted from the NDCs and aligned with relevant targets. The study was carried by WRI to support joint implementation of both the Paris Agreement and the 2030 Agenda. https://www.climatewatchdata.org/data-explorer/emission-pathways?emission-pathways-categories=All%20Selected&emission-pathways-indicators=All%20Selected&emission-pathways-locations=All%20Selected&emission-pathways-models=All%20Selected&emission-pathways-scenarios=All%20Selected&emission-pathways-subcategories=All%20Selected&page=1
DOI: 10.6084/m9.figshare.17096783
title: Blood pressure data #1

description: Cardiovascular parameters (heart rate, pulsatile arterial pressure, mean arterial pressure) were measured on conscious rats (Wistar) after intra-venous (folder "Femoral") or intra-arterial (folder "Carotida") administration of BK-(1-9), BK-(1-7) or BK-(1-5).
DOI: 10.5281/zenodo.5546094
title: OME-NGFF: EM image of SARS-CoV-2

description: Section of a 30 GB EM image of SARS-CoV-2 in the human intestine from Lamers et al. (Science 2020; 10.1126/science.abc1669) available in the Image Data Resource under accession idr0083 and DOI 10.17867/10000135 under CC-BY 4.0. The original data in TIFF format was converted into the Zarr format following the 0.1 version of the OME-NGFF specification (https://ngff.openmicroscopy.org/0.1/)
DOI: 10.5281/zenodo.5546093
title: OME-NGFF: EM image of SARS-CoV-2

description: Section of a 30 GB EM image of SARS-CoV-2 in the human intestine from Lamers et al. (Science 2020; 10.1126/science.abc1669) available in the Image Data Resource under accession idr0083 and DOI 10.17867/10000135 under CC-BY 4.0. The original data in TIFF format was converted into the Zarr format following the 0.1 version of the OME-NGFF specification (https://ngff.openmicroscopy.org/0.1/)
DOI: 10.5281/zenodo.5744812
title: Slopes dataset

description: Dataset of terrain slopes. Contains ArcGIS Pro package, geodatabase and shapefiles.
DOI: 10.6084/m9.figshare.17099798
title: SMARTLife Data Dictionary used for a comparative study

description: This is a tool used to collect data from research administrators and managers.
DOI: 10.6084/m9.figshare.17099798.v2
title: SMARTLife Data Dictionary used for a comparative study

description: This is a tool used to collect data from research administrators and managers.
DOI: 10.6084/m9.figshare.17099798.v1
title: Untitled Item

description: This is a tool used to collect data from research administrators and managers.
DOI: 10.18112/openneuro.ds003835.v1.0.2
title: PE-Update