cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/wnnfz-pmd91
title: Hn in 5% CO2

description: H. neapolitanus cell h5 in 5% CO2
description: <strong>Tilt Series Date:</strong> 2007-09-20</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth in 5% CO2</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-20-3/rawdata/</p>Hn0h_h5_180e12um18K_20sept07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-20-3/rawdata/Hn0h_h5_180e12um18K_20sept07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Hn0h_h5_180e12um18K_20sept07_bin1.rec,  Reconstruction (Pixel Size 0.0 nm), 359.8 MB  
        
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        Hn0h_h5_180e12um18K_20sept07_bin2_s60_cbxypartial.tif,  798.1 kB  
        
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        > <i class="download icon"></i> Download </a></p>

        Hn0h_h5_180e12um18K_20sept07_bin2_s68_cbxy_darkdens.tif,  798.1 kB  
        
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        Hn0h_h5_180e12um18K_20sept07_bin2_s50_needlePi.tif,  798.1 kB  
        
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        > <i class="download icon"></i> Download </a></p>

        Hn0h_h5_180e12um18K_20sept07_bin2_5ave_rec.mov,  file associated to 3D Image #4002, 8.7 MB  
        
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DOI: 10.22002/bwmbk-a7b95
title: Ty3 virus like particle

description: reverse transcriptase (RT) mutant, elongation less severe than PR mutant and w.t.
description: <strong>Tilt Series Date:</strong> 2008-05-19</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> Ty3</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2008-05-19-23/rawdata/</p>Ty3_sam5_sq02_h02_41k.st,  Tilt Series (Pixel Size 0.52 nm), 570.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Ty3_sam5_sq02_h02_41k_bin2_full.rec,  Reconstruction (Pixel Size 1.04 nm), 629.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Ty3_sam5_sq02_h02_41k_bin2_rec_cut1_bnad.mrc,  central slice through a few particles, 8.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Ty3_sam5_sq02_h02_41k_bin2_rec_cut1_bnad_slicer000.tif,  xyz slices through one particle, 369.6 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2008-05-19-23/file_1092/Ty3_sam5_sq02_h02_41k_bin2_rec_cut1_bnad_slicer000.tif"
        > <i class="download icon"></i> Download </a></p>

        Ty3_sam5_sq02_h02_41k_bin2_rec_cut1_bnad_part01_xyz000.tif,  isosurface of one particle, 120.2 kB  
        
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        Ty3_sam5_sq02_h02_41k_bin2_rec_cut1_bnad_part01_iso.png,  99.4 kB  
        
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DOI: 10.25921/aagt-dy45
title: EM304 Water Column Sonar Data Collected During EX2401
DOI: 10.22002/jmm5h-y6q72
title: Thiomonas intermedia

description: T. intermedia cell h5 (Timm6h)
description: <strong>Tilt Series Date:</strong> 2007-10-13</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Thiomonas intermedia</p>
<strong>Strain:</strong> K12</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
  civ2007-10-13-1_slicer6631.jpg: filament civ2007-10-13-1_slicer6633.jpg: filament civ2007-10-13-1_slicer6634.jpg: filament
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-10-13-1/rawdata/</p>Tim6h_h5_180e12um18K_13oct07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-10-13-1/rawdata/Tim6h_h5_180e12um18K_13oct07.mrc"
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        Tim6h_h5_180e12um18K_13oct07_bin1.rec,  Reconstruction (Pixel Size 0.0 nm), 744.2 MB  
        
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        Tim6h_h5_180e12um18K_13oct07_bin2_s98_cbxy_partial.tif,  1.3 MB  
        
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        Tim6h_h5_180e12um18K_13oct07_bin2_s126_cbxy_darkdens.tif,  1.3 MB  
        
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        Tim6h_h5_180e12um18K_13oct07_bin2_s118_cbxy_darkdens.tif,  1.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Tim6h_h5_180e12um18K_13oct07_bin2_5ave_rec.mov,  file associated to 3D Image #4162, 24.2 MB  
        
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DOI: 10.15468/dl.zmueut
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chen canagica",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030480-250811113504898/datasets/export for details.
DOI: 10.22002/rads1-1sg76
title: Thiomonas intermedia

description: T. intermedia cell h2 (Tirm)
description: <strong>Tilt Series Date:</strong> 2007-10-12</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Thiomonas intermedia</p>
<strong>Strain:</strong> K12</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
  civ2007-10-12-5_slicer5985.jpg: Unknown filament civ2007-10-12-5_slicer5986.jpg: Unknown REZ civ2007-10-12-5_slicer5988.jpg: Unknown tube
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-10-12-5/rawdata/</p>Tirm_h2_180e12um18K_12oct07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-10-12-5/rawdata/Tirm_h2_180e12um18K_12oct07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Tirm_h2_180e12um18K_12oct07_bin1.rec,  Reconstruction (Pixel Size 0.0 nm), 446.9 MB  
        
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        Tirm_h2_180e12um18K_12oct07_bin2_s110_cbxy_partial.tif,  839.6 kB  
        
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        Tirm_h2_180e12um18K_12oct07_bin2_s85_cleararea.tif,  839.6 kB  
        
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        Tirm_h2_180e12um18K_12oct07_bin2_s102_pPi_string.tif,  839.6 kB  
        
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        > <i class="download icon"></i> Download </a></p>

        Tirm_h2_180e12um18K_12oct07_bin2_5ave_rec.mov,  file associated to 3D Image #4138, 13.8 MB  
        
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DOI: 10.22002/j8gzw-kd989
title: Hn under limiting CO2 for 1 hr

description: H. neapolitanus cell h1 under limiting CO2 for 1 hourKeywords: carboxysomes, partial carboxysomes, strings, internal granules
description: <strong>Tilt Series Date:</strong> 2007-09-21</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth under limiting CO2 for 1 hour</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-21-4/rawdata/</p>Hn1h_h1_180e12um18K_21sept07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-21-4/rawdata/Hn1h_h1_180e12um18K_21sept07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Hn1h_h1_180e12um18K_21sept07_bin1.rec,  Reconstruction (Pixel Size 0.0 nm), 496.3 MB  
        
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        Hn1h_h1_180e12um18K_21sept07_bin2_s83_Pistring.tif,  1.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Hn1h_h1_180e12um18K_21sept07_bin2_s98_cbxypartial.tif,  1.1 MB  
        
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        Hn1h_h1_180e12um18K_21sept07_bin2_s72_cbxy1_darkdens.tif,  1.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Hn1h_h1_180e12um18K_21sept07_bin2_5ave_rec.mov,  file associated to 3D Image #4040, 13.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/enkr6-9p543
title: Thiomonas intermedia

description: T. intermedia cell h3 (Tirm)Keywords: carboxysomes
description: <strong>Tilt Series Date:</strong> 2007-10-12</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Thiomonas intermedia</p>
<strong>Strain:</strong> K12</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
  civ2007-10-12-1_slicer6637.jpg: Carboxysomes
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-10-12-1/rawdata/</p>Tirm_h3_180e12um18K_12oct07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-10-12-1/rawdata/Tirm_h3_180e12um18K_12oct07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Tirm_h3_180e12um18K_12oct07_bin1.rec,  Reconstruction (Pixel Size 0.0 nm), 420.9 MB  
        
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        Tirm_h3_180e12um18K_12oct07_bin2_s52_filam.tif,  825.8 kB  
        
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        Tirm_h3_180e12um18K_12oct07_bin2_s106_pPineedle.tif,  825.8 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-10-12-1/file_1518/Tirm_h3_180e12um18K_12oct07_bin2_s106_pPineedle.tif"
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        Tirm_h3_180e12um18K_12oct07_bin2_s151_pPi_string.tif,  825.8 kB  
        
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        > <i class="download icon"></i> Download </a></p>

        Tirm_h3_180e12um18K_12oct07_bin2_5ave_rec.mov,  file associated to 3D Image #3915, 14.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-10-12-1/file_1522/Tirm_h3_180e12um18K_12oct07_bin2_5ave_rec.mov"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ww4bp-6tk07
title: Hn under limiting CO2 for 24 hrs

description: H. neapolitanus cell h3 under limiting CO2 for 24 hours
description: <strong>Tilt Series Date:</strong> 2007-09-20</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth under limiting CO2 for 24 hours</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-20-6/rawdata/</p>H24h_h3_180e12um22K_20sept07.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        H24h_h3_180e12um22K_20sept07_bin1.rec,  Reconstruction (Pixel Size 0.0 nm), 462.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-20-6/3dimage_4208/H24h_h3_180e12um22K_20sept07_bin1.rec"
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        H24h_h3_180e12um22K_20sept07_bin2_s138_cbxypartial.tif,  982.7 kB  
        
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        H24h_h3_180e12um22K_20sept07_bin2_s79_Pistring.tif,  982.7 kB  
        
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        H24h_h3_180e12um22K_20sept07_bin2_s84_cbxy_darkdens.tif,  982.7 kB  
        
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        H24h_h3_180e12um22K_20sept07_bin2_5ave_rec.mov,  file associated to 3D Image #4208, 14.7 MB  
        
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DOI: 10.22002/wcays-ed777
title: Handedness test

description: Two quantifoil grids with different sizes of gold were loaded into one cartridge.  The finder grid provided known 2D orientation, and 3D reconstruction determines the handedness. .
description: <strong>Tilt Series Date:</strong> 2007-06-15</p>
<strong>Data Taken By:</strong> Bill Tivol</p>
<strong>Species / Specimen:</strong> Test Samples</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 62.0°), step: °, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Prabha Dias</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/btf2007-06-15-1/rawdata/</p>handednesstest480x.st,  Tilt Series (Pixel Size 275.0 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/btf2007-06-15-1/rawdata/handednesstest480x.st"
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        handednesstest480x_full.rec,  Reconstruction (Pixel Size 550.0 nm), 131.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/btf2007-06-15-1/3dimage_376/handednesstest480x_full.rec"
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        handednesstest480x_full_bk.rec,  Reconstruction (Pixel Size 550.0 nm), 131.1 MB  
        
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        bot.rec,  Reconstruction (Pixel Size 550.0 nm), 41.0 MB  
        
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        mid.rec,  Reconstruction (Pixel Size 550.0 nm), 41.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/btf2007-06-15-1/3dimage_379/mid.rec"
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        top.rec,  Reconstruction (Pixel Size 550.0 nm), 41.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/btf2007-06-15-1/3dimage_380/top.rec"
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