cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e144461v1
title: Files for "Letting the briber go free: An experiment on mitigating harassment bribes"

description: [This paper examines the effectiveness of using asymmetric liability to combat harassment bribes. Basu (2011) advocates legal immunity for bribe-givers, while retaining culpability for bribe-takers. Results from our experiment indicate that while this policy has the potential to significantly reduce corrupt practices, weak economic incentives for the bribe-giver, or retaliation by bribe-takers can mitigate the positive disciplining effect of such an implementation. Asymmetric liability on its own may hence face challenges in the field. <br><br><br><br><br>, This paper examines the effectiveness of using asymmetric liability to combat harassment bribes. Basu (2011) advocates legal immunity for bribe-givers, while retaining culpability for bribe-takers. Results from our experiment indicate that while this policy has the potential to significantly reduce corrupt practices, weak economic incentives for the bribe-giver, or retaliation by bribe-takers can mitigate the positive disciplining effect of such an implementation. Asymmetric liability on its own may hence face challenges in the field. <br><br><br><br><br>]
description: None<br>
DOI: 10.6084/m9.figshare.14986705
title: Fastq original files; Supplement 1 from The role of ketogenesis in the migratory fattening of the Northern Wheatear <i>Oenanthe oenanthe</i>

description: The raw sequence data can be found in The Sequence Read Archive (SRA) database from the National Center for Biotechnology Information (NCBI; https://www.ncbi.nlm.nih.gov/sra/) under the BioSample accessions: SAMN16177890-SAMN16177904.; Supplemental material. The role of ketogenesis in the migratory fattening of Northern Wheatears Oenanthe oenanthe. Roberto Carlos Frias-Soler, Natalie A. Kelsey, Lilian Villarín Pildaín, Michael Wink, and Franz Bairlein. Biology Letter, 2021.
DOI: 10.5281/zenodo.5105560
title: Patient Representatives' Perspective on Informed Consent: Nominal Group Data

description: Data obtained in the Nominal Group conducted as part of the task and deliverable 1.6 of the i-CONSENT project. The workshop focused on four themes: understanding, patient participation expectations, assent in the case of minors and gender perspectives. The Nominal Group Technique was used to gather the perspectives of patient group representatives and to identify and prioritise issues related to the informed consent process.
DOI: 10.5281/zenodo.5101351
title: Deconvolution Test Dataset

description: This a test dataset, HeLa cells stained for action using Phalloidin-488 acquired on confocal Zeiss LSM710, which contains - Ph488.czi (contains all raw metadata) - Raw_large.tif ( is the tif version of Ph488.czi, provided for conveninence as tif doesn't need Bio-Formats to be open in Fiji ) - Raw.tif , is a crop of the large image - PSFHuygens_confocal_Theopsf.tif , is a theoretical PSF generated with HuygensPro - PSFgen_WF_WBpsf.tif , is a theoretical PSF generated with PSF generator - PSFgen_WFsquare_WBpsf.tif, is the result of the square operation on PSFgen_WF_WBpsf.tif , to approximate a confocal PSF
DOI: 10.5281/zenodo.5101350
title: Deconvolution Test Dataset

description: This a test dataset, HeLa cells stained for action using Phalloidin-488 acquired on confocal Zeiss LSM710, which contains - Ph488.czi (contains all raw metadata) - Raw_large.tif ( is the tif version of Ph488.czi, provided for conveninence as tif doesn't need Bio-Formats to be open in Fiji ) - Raw.tif , is a crop of the large image - PSFHuygens_confocal_Theopsf.tif , is a theoretical PSF generated with HuygensPro - PSFgen_WF_WBpsf.tif , is a theoretical PSF generated with PSF generator - PSFgen_WFsquare_WBpsf.tif, is the result of the square operation on PSFgen_WF_WBpsf.tif , to approximate a confocal PSF
DOI: 10.5281/zenodo.4982671
title: Dataset of the European Light Microscopy Initiative 2019 Core Facility Large Survey

description: In occasion of the 2019 ELMI meeting held in Brno, Czech Republic the organizers of the Core Facility day (Laurent Gelman, Marco Marcello, Roland Nitschke, Laure Plantard, Stefan Terjung) launched a Large Core Facility Survey.<br> This repository contains the screenshots of the original survey, a formatted list of questions, and the anonymised data from this survey, a total of 226 responses from 25 countries distributed over 5 continents. Results are subdivided in 5 Areas, Staff, Finances, Equipment, Quality control, IT and Data Management.
DOI: 10.5281/zenodo.5090508
title: Example data for using napari-pyclesperanto-assistant

description: CalibZAPWfixed_000154_max.tif * Maximum projection of a part of a Drosophila melanogaster embryo showing cell divisions, marked with histone-GFP. Imaged using lightsheet microscopy in Gene Myers lab, MPI-CBG / CSBD Dresden CLIJ_benchmarking_000350.raw.tif * 3D Volume of a Drosophila melanogaster during gastrulation marked histone-GFP. Imaged using lightsheet microscopy in Gene Myers lab, MPI-CBG / CSBD Dresden. This dataset was earlier published https://bds.mpi-cbg.de/CLIJ_benchmarking_data<br> <br> EM_C_6_c0.tif2 * Arabidopsis ovule primordium * This file has been resaved to TIF * It originates from https://datadryad.org/stash/dataset/doi:10.5061/dryad.02v6wwq2c It was originally available under CC0 Public Domain by Baroux, Célia, University of Zurich, Mendocilla-Sato, Ethel, University of Zurich, Autran, Daphné, IRD Montpellier<br> <br> Haase_MRT_tfl3d1.tif * This MRI dataset of the author was acquired at University Hospital Carl Gustav Carus of the University of Technology, TU Dresden as part of academic training of students in the Department of Radiology<br> <br> tissue.tif, tissue_measurements.tif * Simulated tissue + measurement. Code provided for reporducibility: import pyclesperanto_prototype as cle<br> import numpy as np<br> import matplotlib<br> from numpy.random import random cle.select_device("RTX") # Generate artificial cells as test data<br> tissue = cle.artificial_tissue_2d() # fill it with random measurements<br> values = random([int(cle.maximum_of_all_pixels(tissue))])<br> for i, y in enumerate(values):<br> if (i != 95):<br> values[i] = values[i] * 10 + 45<br> else:<br> values[i] = values[i] * 10 + 90 measurements = cle.push(np.asarray([values])) # visualize measurements in space<br> tissue_measurements = cle.replace_intensities(tissue, measurements)
DOI: 10.5281/zenodo.5090507
title: Example data for using napari-pyclesperanto-assistant

description: CalibZAPWfixed_000154_max.tif * Maximum projection of a part of a Drosophila melanogaster embryo showing cell divisions, marked with histone-GFP. Imaged using lightsheet microscopy in Gene Myers lab, MPI-CBG / CSBD Dresden CLIJ_benchmarking_000350.raw.tif * 3D Volume of a Drosophila melanogaster during gastrulation marked histone-GFP. Imaged using lightsheet microscopy in Gene Myers lab, MPI-CBG / CSBD Dresden. This dataset was earlier published https://bds.mpi-cbg.de/CLIJ_benchmarking_data<br> <br> EM_C_6_c0.tif2 * Arabidopsis ovule primordium * This file has been resaved to TIF * It originates from https://datadryad.org/stash/dataset/doi:10.5061/dryad.02v6wwq2c It was originally available under CC0 Public Domain by Baroux, Célia, University of Zurich, Mendocilla-Sato, Ethel, University of Zurich, Autran, Daphné, IRD Montpellier<br> <br> Haase_MRT_tfl3d1.tif * This MRI dataset of the author was acquired at University Hospital Carl Gustav Carus of the University of Technology, TU Dresden as part of academic training of students in the Department of Radiology<br> <br> tissue.tif, tissue_measurements.tif * Simulated tissue + measurement. Code provided for reporducibility: import pyclesperanto_prototype as cle<br> import numpy as np<br> import matplotlib<br> from numpy.random import random cle.select_device("RTX") # Generate artificial cells as test data<br> tissue = cle.artificial_tissue_2d() # fill it with random measurements<br> values = random([int(cle.maximum_of_all_pixels(tissue))])<br> for i, y in enumerate(values):<br> if (i != 95):<br> values[i] = values[i] * 10 + 45<br> else:<br> values[i] = values[i] * 10 + 90 measurements = cle.push(np.asarray([values])) # visualize measurements in space<br> tissue_measurements = cle.replace_intensities(tissue, measurements)
DOI: 10.5281/zenodo.4700067
title: HeLa timelapse (H2B-mCherry, Digital Phase Contrast )

description: The time-lapse dataset was acquired on a PerkinElmer Operetta CLS, using a Plan Apochromat 20x N.A. 0.8 objective, and an Andor Zyla 5.5 camera ( pixel dimensions: 0.298 microns ) The time-points were acquired every 15 minutes, for 60 hours. HeLa cells expressing H2B-mCherry Red channel and Digital Phase Contrast (DPC) images. Note1: The 5 hours dataset corresponds to timepoints 59 to 78 (provided as a lighter alternative to the full dataset) Note2: The dataset corresponds to a part of the original field of view.
DOI: 10.5281/zenodo.4700066
title: HeLa timelapse (H2B-mCherry, Digital Phase Contrast )

description: The time-lapse dataset was acquired on a PerkinElmer Operetta CLS, using a Plan Apochromat 20x N.A. 0.8 objective, and an Andor Zyla 5.5 camera ( pixel dimensions: 0.298 microns ) The time-points were acquired every 15 minutes, for 60 hours. HeLa cells expressing H2B-mCherry Red channel and Digital Phase Contrast (DPC) images. Note1: The 5 hours dataset corresponds to timepoints 59 to 78 (provided as a lighter alternative to the full dataset) Note2: The dataset corresponds to a part of the original field of view.
DOI: 10.5281/zenodo.4705064
title: Cell bleach sample

description: This is an dataset sample to demonstrate tracking capability of the Active Contours plugin for Icy.
DOI: 10.5281/zenodo.4705063
title: Cell bleach sample

description: This is an dataset sample to demonstrate tracking capability of the Active Contours plugin for Icy.
DOI: 10.15128/r2bk128991d
title: Dynamics of a degenerate Cs-Yb mixture with attractive interspecies interactions [dataset]

description: Data files used in "Dynamics of a degenerate Cs-Yb mixture with attractive interspecies interactions". For more information refer to the README.txt file included in data zip file.
description: We probe the collective dynamics of a quantum degenerate Bose-Bose mixture of $^{133}$Cs and $^{174}$Yb with attractive interspecies interactions. Specifically, we excite vertical center of mass oscillations of the Cs condensate. We observe significant damping for the Cs dipole mode, due to the rapid transfer of energy to the larger Yb component and the ensuing acoustic dissipation. Numerical simulations based on coupled Gross-Pitaevskii equations provide excellent agreement with experiment, and additionally reveal the possibility of late-time revivals (beating) which are found to be highly sensitive to the Cs and Yb atom number combinations. By further tuning the interaction strength of Cs using a broad Feshbach resonance, we explore the stability of the degenerate mixture. We observe collapse of the Cs condensate mediated by the attractive Cs-Yb interaction when $a_{\rm{Cs}}&lt;50 \, a_0$, well above the single-species collapse threshold, in good agreement with simulations.
DOI: 10.5281/zenodo.5104942
title: Extended Cookbook Data

description: Extended Cookbook Data used to support the paper https://doi.org/10.1145/3474624.3474627
DOI: 10.5281/zenodo.5104941
title: Extended Cookbook Data

description: Extended Cookbook Data used to support the paper https://doi.org/10.1145/3474624.3474627
DOI: 10.14278/rodare.1063
title: Data publication: Optical Kerr nonlinearity and multi-photon absorption of DSTMS measured by Z-scan method

description: Z-scan data (polarization dependent) Matlab scripts for the fitting and simulations FTIR transmission data ------------------------------------------ Center wavelength of OPA: 1430 nm FWHM duration of OPA pulses: 75 fs Pulse energy: 20 nJ thickness of DSTMS: 0.4 mm 'OA' means open aperture 'CA' meams close aperture
DOI: 10.14278/rodare.1062
title: Data publication: Optical Kerr nonlinearity and multi-photon absorption of DSTMS measured by Z-scan method

description: Z-scan data (polarization dependent) Matlab scripts for the fitting and simulations FTIR transmission data ------------------------------------------ Center wavelength of OPA: 1430 nm FWHM duration of OPA pulses: 75 fs Pulse energy: 20 nJ thickness of DSTMS: 0.4 mm 'OA' means open aperture 'CA' meams close aperture
DOI: 10.6084/m9.figshare.14986784.v1
title: Datasets from Family-specific chemical profiles provide potential kin recognition cues in the sexually cannibalistic spider <i>Argiope bruennichi</i>

description: Raw data for figures 1 and 2
DOI: 10.6084/m9.figshare.14986784
title: Datasets from Family-specific chemical profiles provide potential kin recognition cues in the sexually cannibalistic spider <i>Argiope bruennichi</i>

description: Raw data for figures 1 and 2
DOI: 10.15129/bd7aa4bd-6e68-43a8-804f-896ccad71692
title: Data for: "Processing outcomes of atomic force microscope tip-based nanomilling with different trajectories on single-crystal silicon"

description: The dataset contains numerical data to illustrate the relationship between the nanochannel depth and the applied normal load. The data can be read by using origin software.
DOI: 10.6084/m9.figshare.14986785
title: Supplementary Material for: Tyramine 1 Receptor Distribution in the Brain of Corbiculate Bees Points to a Conserved Function

description: Sucrose represents an important carbohydrate source for most bee species. In the Western honeybee (<i>Apis mellifera</i>) it was shown that individual sucrose responsiveness correlates with the task performed in the colony, supporting the response threshold theory which states that individuals with the lowest threshold for a task-associated stimuli will perform the associated task. Tyramine was shown to modulate sucrose responsiveness, most likely via the tyramine 1 receptor. This receptor is located in brain areas important for the processing of gustatory stimuli. We asked whether the spatial expression pattern of the tyramine 1 receptor is a unique adaptation of honeybees or if its expression represents a conserved trait. Using a specific tyramine receptor 1 antibody, we compared the spatial expression of this receptor in the brain of different corbiculate bee species, including eusocial honeybees, bumblebees, stingless bees, and the solitary bee <i>Osmia bicornis</i> as an outgroup. We found a similar labeling pattern in the mushroom bodies, the central complex, the dorsal lobe, and the gnathal ganglia, indicating a conserved receptor expression. With respect to sucrose responsiveness this result is of special importance. We assume that the tyramine 1 receptor expression in these neuropiles provides the basis for modulation of sucrose responsiveness. Furthermore, the tyramine 1 receptor expression seems to be independent of size, as labeling is similar in bee species that differ greatly in their body size. However, the situation in the optic lobes appears to be different. Here, the lobula of stingless bees is clearly labeled by the tyramine receptor 1 antibody, whereas this labeling is absent in other species. This indicates that the regulation of this receptor is different in the optic lobes, while its function in this neuropile remains unclear.
DOI: 10.6084/m9.figshare.14906373.v1
title: NH3 raman

description: Quantative Raman spectra of ammonia under elevated temperature for combustion research applications
DOI: 10.6084/m9.figshare.14986725
title: Supplementary Material for: An Apparently Balanced Complex Chromosome Rearrangement Involving Seven Breaks and Four Chromosomes in a Healthy Female and Segregation/Recombination in Her Affected Son

description: Duplication of the distal 1q and 4p segments are both characterized by the presence of intellectual disability/neurodevelopmental delay and dysmorphisms. Here, we describe a male with a complex chromosome rearrangement (CCR) presenting with overlapping clinical findings between these 2 syndromes. In order to better characterize this CCR, classical karyotyping, FISH, and chromosomal microarray analysis were performed on material from the patient and his parents, which revealed an unbalanced karyotype with duplications at 1q41q43 and 4p15.2p14 in the proband. The rearrangements, which were derived from a maternal balanced karyotype, included an insertion of a segment from the long to the short arm of chromosome 1, a balanced translocation involving chromosomes 14 and 18, and an insertion of a segment from the short arm of chromosome 4 into the derived chromosome 14. This study aimed to better define the clinical history and prognosis of a patient with this rare category of chromosomal aberration. Our results suggest that the frequency of CCR in the general population may be underestimated; when balanced, they may not have a phenotypic effect. Moreover, they emphasize the need for cytogenetic techniques complementary to chromosomal microarray for proper genetic counseling.
DOI: 10.5519/qd.c4yvcol2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5233 records)
DOI: 10.6084/m9.figshare.14986829.v1
title: Table S5 from Mesozoic origin and ‘out-of-India’ radiation of ricefishes (Adrianichthyidae)

description: Table S5. Geographic distributions of taxa demonstrated to be ‘out-of-India’ by molecular studies. “1” represents presence in respective geographic areas.
DOI: 10.6084/m9.figshare.14986829
title: Table S5 from Mesozoic origin and ‘out-of-India’ radiation of ricefishes (Adrianichthyidae)

description: Table S5. Geographic distributions of taxa demonstrated to be ‘out-of-India’ by molecular studies. “1” represents presence in respective geographic areas.
DOI: 10.5281/zenodo.5105611
title: Supplemental_Tables_Jimenez2021

description: Supplemental tables for the paper entitled "Reactive oxygen species homeostasis and circadian rhythms in plants" by Ana Jiménez, Francisca Sevilla and María C. Martí.
DOI: 10.5281/zenodo.5044937
title: Supplemental_Tables_Jimenez2021

description: Supplemental tables for the paper entitled "Reactive oxygen species homeostasis and circadian rhythms in plants" by Ana Jiménez, Francisca Sevilla and María C. Martí.
DOI: 10.5281/zenodo.5083179
title: ARTE experiments replication package

description: This dataset contains the replication package for the paper entitled "ARTE: Automated Generation of Realistic Test Inputs for Web APIs"
DOI: 10.5281/zenodo.5101343
title: Datatset: Machine-Learning Side-Channel Attacks on the GALACTICS Constant-Time Implementation of BLISS

description: This dataset accompanies the paper "Machine-Learning Side-Channel Attacks on the GALACTICS Constant-Time Implementation of BLISS". It was used to experimentally prove the presented attack strategies on real hardware. The corresponding source code for all three attacks is also publicly available. A detailed description of how the data was obtained can be found in the paper. Section 4 precisely describes the experimental setup. Prerequisites: <pre><code class="language-bash">sudo apt-get install p7zip</code></pre> Extract the data: <pre><code class="language-bash">7z x galactics_attack_data.7z</code></pre> Running the attacks: The source code to run the three presented attacks can be found on Github. The instructions on how to use the python code can be obtained from the corresponding README. Re-using the dataset: The dataset consists of <em>.pickle</em> and <em>.bin</em> files. The <em>.pickle</em> files can be read using Pythons Pandas library. Python access functions for the <em>.bin</em> files are also provided.
description: The research was supported in part by the German Ministry for Education and Research (ref. 16KIS1072 and ref. 01IS18025A)
DOI: 10.5281/zenodo.5101342
title: Datatset: Machine-Learning Side-Channel Attacks on the GALACTICS Constant-Time Implementation of BLISS

description: This dataset accompanies the paper "Machine-Learning Side-Channel Attacks on the GALACTICS Constant-Time Implementation of BLISS". It was used to experimentally prove the presented attack strategies on real hardware. The corresponding source code for all three attacks is also publicly available. A detailed description of how the data was obtained can be found in the paper. Section 4 precisely describes the experimental setup. Prerequisites: <pre><code class="language-bash">sudo apt-get install p7zip</code></pre> Extract the data: <pre><code class="language-bash">7z x galactics_attack_data.7z</code></pre> Running the attacks: The source code to run the three presented attacks can be found on Github. The instructions on how to use the python code can be obtained from the corresponding README. Re-using the dataset: The dataset consists of <em>.pickle</em> and <em>.bin</em> files. The <em>.pickle</em> files can be read using Pythons Pandas library. Python access functions for the <em>.bin</em> files are also provided.
description: The research was supported in part by the German Ministry for Education and Research (ref. 16KIS1072 and ref. 01IS18025A)
DOI: 10.6084/m9.figshare.14986830
title: Vulnerability reporters for ESEM

description: Main part of the dataset used for the ESEM 2021 paper: "Who are Vulnerability Reporters? A Large-scale Empirical Study on FLOSS". Email addresses are redacted when another unique identifier exists for a reporter to reduce the potential of abuse. All data were collected from public sources that manifestly made them public. No social media information is included.<br>
DOI: 10.6084/m9.figshare.14986830.v1
title: Vulnerability reporters for ESEM

description: Main part of the dataset used for the ESEM 2021 paper: "Who are Vulnerability Reporters? A Large-scale Empirical Study on FLOSS". Email addresses are redacted when another unique identifier exists for a reporter to reduce the potential of abuse. All data were collected from public sources that manifestly made them public. No social media information is included.<br>
DOI: 10.6084/m9.figshare.14900918
title: Limit relations involving 2-orthogonal polynomials

description: As an extension of the Askey-scheme, recently, it has been introduced the so-called <i>d</i>-Askey-scheme, which is a table describing families of hypergeometric <i>d</i>-orthogonal polynomials. In this paper, we derive limit relations linking between all levels of the 2-Askey-scheme (Figure 1). To this end, we use three methods. The first one is based on a recurrence relation. The second one uses difference and differential equations, and the third one deals with the hypergeometric expression of the considered polynomials. The recurrence relations, differential and difference equations will be determined by the use of Computer Algebra program Maple. That allows us to get, explicitly, the 2-Askey-scheme with various properties of their polynomials, which appears to be new.
DOI: 10.6084/m9.figshare.14900918.v1
title: Limit relations involving 2-orthogonal polynomials

description: As an extension of the Askey-scheme, recently, it has been introduced the so-called <i>d</i>-Askey-scheme, which is a table describing families of hypergeometric <i>d</i>-orthogonal polynomials. In this paper, we derive limit relations linking between all levels of the 2-Askey-scheme (Figure 1). To this end, we use three methods. The first one is based on a recurrence relation. The second one uses difference and differential equations, and the third one deals with the hypergeometric expression of the considered polynomials. The recurrence relations, differential and difference equations will be determined by the use of Computer Algebra program Maple. That allows us to get, explicitly, the 2-Askey-scheme with various properties of their polynomials, which appears to be new.
DOI: 10.5281/zenodo.4697105
title: water isotopic data for the Dumont d'Urville station, Antarctica, 1 minute resolution, summer season 2016-2017

description: Location: Dumont d'Urville (66°39′46″S140°0′07″E) 4 columns for the raw data - Date-time UTC (hour:minute) - mixing ratio (ppmv) - d18O (permil) - dD (permil) 5 columns for the corrected data - Date - time UTC (hour:minute) - mixing ratio (ppmv) - d18O (permil) - dD (permil) - d-excess (permil) Project COMBINISO