cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10377200
title: High-resolution bulked segregant analysis enables candidate gene identification for bacterial wilt resistance in Italian ryegrass

description: Bacterial wilt, caused by Xanthomonas translucens pv. graminis (Xtg), is a serious disease of economically important forage grasses, including Italian ryegrass (Lolium multiflorum Lam.). A major QTL for resistance to Xtg was previously identified, but the precise location as well as the genetic factors underlying the resistance are yet to be determined. To this end, we applied a bulked segregant analysis (BSA) approach, using whole-genome deep sequencing of pools of the most resistant and most susceptible individuals of a large (n = 7,484) biparental F2 population segregating for resistance to Xtg. Using chromosome-level genome sequences as references, we were able to define a ~300 kb region highly associated to resistance on pseudochromosome 4. Further investigation of this region revealed multiple genes with a known role in disease resistance, including genes encoding for Pik2-like disease resistance proteins, cysteine-rich kinases, and RGA4- and RGA5-like disease resistance proteins. Investigation of allele frequencies in the pools and comparative genome analysis in the grandparents of the F2 population revealed that some of these genes contain variants with allele frequencies that correspond to the expected heterozygosity in the resistant grandparent. This study emphasizes the efficacy combining BSA studies in very large populations with whole genome deep sequencing and high-quality genome sequences to pinpoint regions associated with a binary trait of interest and accurately define a small set of candidate genes. Furthermore, markers identified in this region hold significant potential for marker-assisted breeding strategies to breed resistance to Xtg in Italian ryegrass cultivars more efficiently.
description: This dataset accompanies the article with the same title published on bioRxiv https://doi.org/10.1101/2023.12.12.571223

.fasta files contain the genome assemblies created for this study.

.vcf files contain the variant calls based on the two reference genomes used (M2289, Rabiosa, respectively)
DOI: 10.5281/zenodo.10210209
title: High-resolution bulked segregant analysis enables candidate gene identification for bacterial wilt resistance in Italian ryegrass

description: Bacterial wilt, caused by Xanthomonas translucens pv. graminis (Xtg), is a serious disease of economically important forage grasses, including Italian ryegrass (Lolium multiflorum Lam.). A major QTL for resistance to Xtg was previously identified, but the precise location as well as the genetic factors underlying the resistance are yet to be determined. To this end, we applied a bulked segregant analysis (BSA) approach, using whole-genome deep sequencing of pools of the most resistant and most susceptible individuals of a large (n = 7,484) biparental F2 population segregating for resistance to Xtg. Using chromosome-level genome sequences as references, we were able to define a ~300 kb region highly associated to resistance on pseudochromosome 4. Further investigation of this region revealed multiple genes with a known role in disease resistance, including genes encoding for Pik2-like disease resistance proteins, cysteine-rich kinases, and RGA4- and RGA5-like disease resistance proteins. Investigation of allele frequencies in the pools and comparative genome analysis in the grandparents of the F2 population revealed that some of these genes contain variants with allele frequencies that correspond to the expected heterozygosity in the resistant grandparent. This study emphasizes the efficacy combining BSA studies in very large populations with whole genome deep sequencing and high-quality genome sequences to pinpoint regions associated with a binary trait of interest and accurately define a small set of candidate genes. Furthermore, markers identified in this region hold significant potential for marker-assisted breeding strategies to breed resistance to Xtg in Italian ryegrass cultivars more efficiently.
description: This dataset accompanies the article with the same title published on bioRxiv https://doi.org/10.1101/2023.12.12.571223

.fasta files contain the genome assemblies created for this study.

.vcf files contain the variant calls based on the two reference genomes used (M2289, Rabiosa, respectively)
DOI: 10.5281/zenodo.10210210
title: High-resolution bulked segregant analysis enables candidate gene identification for bacterial wilt resistance in Italian ryegrass

description: Bacterial wilt, caused by Xanthomonas translucens pv. graminis (Xtg), is a serious disease of economically important forage grasses, including Italian ryegrass (Lolium multiflorum Lam.). A major QTL for resistance to Xtg was previously identified, but the precise location as well as the genetic factors underlying the resistance are yet to be determined. To this end, we applied a bulked segregant analysis (BSA) approach, using whole-genome deep sequencing of pools of the most resistant and most susceptible individuals of a large (n = 7,484) biparental F2 population segregating for resistance to Xtg. Using chromosome-level genome sequences as references, we were able to define a ~300 kb region highly associated to resistance on pseudochromosome 4. Further investigation of this region revealed multiple genes with a known role in disease resistance, including genes encoding for Pik2-like disease resistance proteins, cysteine-rich kinases, and RGA4- and RGA5-like disease resistance proteins. Investigation of allele frequencies in the pools and comparative genome analysis in the grandparents of the F2 population revealed that some of these genes contain variants with allele frequencies that correspond to the expected heterozygosity in the resistant grandparent. This study emphasizes the efficacy combining BSA studies in very large populations with whole genome deep sequencing and high-quality genome sequences to pinpoint regions associated with a binary trait of interest and accurately define a small set of candidate genes. Furthermore, markers identified in this region hold significant potential for marker-assisted breeding strategies to breed resistance to Xtg in Italian ryegrass cultivars more efficiently.
description: This dataset accompanies the article with the same title published on bioRxiv https://doi.org/10.1101/2023.12.12.571223
DOI: 10.6084/m9.figshare.24806858
title: Table S3 from The genomic architecture of continuous plumage colour variation in the European barn owl (<i>Tyto alba</i>)

description: List of genes within the regions putatively linked with the plumage colouration in the European Barn Owl.
DOI: 10.6084/m9.figshare.24806858.v1
title: Table S3 from The genomic architecture of continuous plumage colour variation in the European barn owl (<i>Tyto alba</i>)

description: List of genes within the regions putatively linked with the plumage colouration in the European Barn Owl.
DOI: 10.6084/m9.figshare.24806861.v1
title: Table S1 from The genomic architecture of continuous plumage colour variation in the European barn owl (<i>Tyto alba</i>)

description: Description of the samples used in this study
DOI: 10.6084/m9.figshare.24806861
title: Table S1 from The genomic architecture of continuous plumage colour variation in the European barn owl (<i>Tyto alba</i>)

description: Description of the samples used in this study
DOI: 10.6084/m9.figshare.24806864
title: Table S4 from The genomic architecture of continuous plumage colour variation in the European barn owl (<i>Tyto alba</i>)

description: Chromosomal location of the genes the closest to each of the three colour-related variants identified in this study in the genome of the barn owl in comparison to their location in the genomes of other bird species: chicken, flycatcher and golden eagle.
DOI: 10.6084/m9.figshare.24806864.v1
title: Table S4 from The genomic architecture of continuous plumage colour variation in the European barn owl (<i>Tyto alba</i>)

description: Chromosomal location of the genes the closest to each of the three colour-related variants identified in this study in the genome of the barn owl in comparison to their location in the genomes of other bird species: chicken, flycatcher and golden eagle.
DOI: 10.21335/nmdc-2092467894
title: Estimated salmon lice induced mortality of Atlantic salmon

description: Estimated salmon lice (Lepeophtheirus salmonis) induced mortality of Atlantic salmon (Salmo salar) during post-smolt migration in Norway. The dataset contains river specific annual estimated mortality from 2019. The mortality is estimated using a model approach described in detail in Johnsen et al. (2020). In short, the salmon post-smolts migration from river to the open ocean is simulated and coupled to the salmon lice concentration field provided by Sandvik et al. (2020). Based upon observed level of salmon lice infestation on trawled wild post-smolts the model is calibrated to fit the observed levels. The wild fish, captured by trawl, is genetically assigned to their homing river as described in Harvey et al. (2019). Further, by assuming tolerance to salmon lice in accordance to Taranger et al. (2015) the mortality was estimated from the modelled infestation levels. The mortality was also estimated for fish with assumed migration 10 days earlier and later, and for fish with assumed higher and lower tolerance to lice infestation levels.
From the model described in Johnsen et al (2020) the model is updated due to development of the hydrodynamic model system. Further information can be found in Lien et al (2022), Albretsen et al (2022) and Skardhamar et al., (2023).
DOI: 10.25318/3310072601-eng
title: Business or organization obstacles over the next three months, fourth quarter of 2023

description: Obstacles faced by the business or organization over the next three months, by North American Industry Classification System (NAICS), business employment size, type of business, business activity and majority ownership, fourth quarter of 2023.
DOI: 10.6084/m9.figshare.24806913
title: Supporting Information for "W4neo: leveraging $\Lambda$ coupled cluster as the `new engine option' for accurate computational thermochemistry approaches"

description: (a) Microsoft Excel workbook with all energies and statistics.(b) PDF document containing the following supplementary figures and tables: Box plots of CCSDTQ5 – CCSDTQ contributions to TAEs (Fig. S1), CCSDTQ(5)$_\Lambda$ – CCSDTQ contributions (Fig. S2), CCSDTQ-CCSDT(Q) and CCSDTQ-CCSDT(Q)$_\Lambda$ basis set convergence (Figs. S3 and S4, respectively), CCSDT(Q)-CCSDT differences (Fig. S5);Table S1: Relative errors (kcal/mol) of T$_4$ – (Q) and T$_4$ – (Q)$_\Lambda$ compared to T$_4$ – (Q)/VQZ(g,d) and T$_4$ – (Q)$_\Lambda$/VQZ(g,d), respectively; Table S2: Wall clock times (min) of composite approaches for selected species; Table S3: Wall clock times per post-CCSD(T) step of each composite approach; Table S4: Post-CCSD(T) step time (\% of total wall time) for each composite approach. <br>
DOI: 10.25318/3310072601-fra
title: Obstacles à surmonter par les entreprises ou organismes au cours des trois prochains mois, quatrième trimestre de 2023

description: Obstacles à surmonter par les entreprises ou les organismes au cours des trois prochains mois, selon le Système de classification des industries de l’Amérique du Nord (SCIAN), l’effectif de l’entreprise, le type d’entreprise, l’activité de l'entreprise et le propriétaire majoritaire, quatrième trimestre de 2023.
DOI: 10.21335/nmdc-16791070
title: Havforskningsinstituttet Ruse og Garn NALO 2022

description: Sea trout and/or Arctic charr were sampled within each locality with either modified floating traps or floating gillnets. The floating traps have been successfully used for monitoring sea lice on salmonids since approximately 2010. Some variation of the trap exists, but in general it consists of a dense 5 meter deep leading-net fixed to the shore, who leads out to a floating funnel trap with a few chambers. The most common model is described in detail by Barlaup et al. 2013* . The gillnets, exclusively monofilament, vary in mesh size from 17-26 mm between knots. Gillnets are deployed 90 degrees from shoreline in suitable locations. Length and height of the gillnets are respectively 30 and 2,5 m. Traps are checked minimum every day. Gillnets are checked continuously while deployed.
 
Lice counts on sea trout were performed in the field immediately after collection. Fish from traps were anesthetized before sampling (Benzocaine 200 mg/ml diluted by 15-20 ml/100 l water) and released to the sea after recovery. Trout from gillnets were killed. Lice counts were performed with the fish submerged in a white plastic tub (5-10 l) using a strong headlamp (&gt;500 lumen). Counts were performed by personnel with special training in identification of all salmon lice stages. The following 6 lice categories was recorded: copepodite, chalimus 1, chalimus 2, pre-adult, adult male and adult female. Fish length in mm and mass in gram were recorded.
DOI: 10.5517/ccdc.csd.cc29m2wx
title: CCDC 2133509: Experimental Crystal Structure Determination

description: Related Article: Shiying Yang, Qiwen Liu, Weiwen Ji, Qi An, Junke Song, Cheng Xing, Dezhi Yang, Li Zhang, Yang Lu, Guanhua Du|2022|Molecules|27|2022|doi:10.3390/molecules27062022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29m2xy
title: CCDC 2133510: Experimental Crystal Structure Determination

description: Related Article: Shiying Yang, Qiwen Liu, Weiwen Ji, Qi An, Junke Song, Cheng Xing, Dezhi Yang, Li Zhang, Yang Lu, Guanhua Du|2022|Molecules|27|2022|doi:10.3390/molecules27062022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29m2yz
title: CCDC 2133511: Experimental Crystal Structure Determination

description: Related Article: Shiying Yang, Qiwen Liu, Weiwen Ji, Qi An, Junke Song, Cheng Xing, Dezhi Yang, Li Zhang, Yang Lu, Guanhua Du|2022|Molecules|27|2022|doi:10.3390/molecules27062022
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.21335/nmdc-925247887
title: Havforskningsinstituttet Ruse og Garn NALO 2023

description: Sea trout and/or Arctic charr were sampled within each locality with either modified floating traps or floating gillnets. The floating traps have been successfully used for monitoring sea lice on salmonids since approximately 2010. Some variation of the trap exists, but in general it consists of a dense 5 meter deep leading-net fixed to the shore, who leads out to a floating funnel trap with a few chambers. The most common model is described in detail by Barlaup et al. 2013* . The gillnets, exclusively monofilament, vary in mesh size from 17-26 mm between knots. Gillnets are deployed 90 degrees from shoreline in suitable locations. Length and height of the gillnets are respectively 30 and 2,5 m. Traps are checked minimum every day. Gillnets are checked continuously while deployed.
 
Lice counts on sea trout were performed in the field immediately after collection. Fish from traps were anesthetized before sampling (Benzocaine 200 mg/ml diluted by 15-20 ml/100 l water) and released to the sea after recovery. Trout from gillnets were killed. Lice counts were performed with the fish submerged in a white plastic tub (5-10 l) using a strong headlamp (&gt;500 lumen). Counts were performed by personnel with special training in identification of all salmon lice stages. The following 6 lice categories was recorded: copepodite, chalimus 1, chalimus 2, pre-adult, adult male and adult female. Fish length in mm and mass in gram were recorded.
DOI: 10.25318/3310072701-eng
title: Most challenging obstacle expected by the business or organization over the next three months, fourth quarter of 2023

description: Most challenging obstacle expected by the business or organization over the next three months, by North American Industry Classification System (NAICS), business employment size, type of business, business activity and majority ownership, fourth quarter of 2023.
DOI: 10.21335/nmdc-213822115
title: Havforskningsinstituttet Smoltbur 2023 Hardangerfjorden

description: The dataset includes Institute of Marine Research data of salmon lice counts on smolts in sentinel cages in Hardangerfjord, Norway in 2023.
DOI: 10.5281/zenodo.7436114
title: dataset on Refugees and labour market at Middle East  countries

description: Dataset with quality and quantity labour indicators and the number of refugees in host Middle Eastern countries (Egypt, Iran, Lebanon, Jordan and Turkiye) from 1991 to 2021. Data are collected from World Bank Open data and the statistics on working poverty by ILOSTAT. It includes:



	
Refugee ratio (as a percentage of the total population of each country); Official development assistance.
	
Quantitative labour market indicators: unemployment rate, labour force, number of own-account workers.
	
Qualitative labour market indicators: distribution of employment by income level in developing countries.
DOI: 10.5281/zenodo.7436115
title: dataset on Refugees and labour market at Middle East  countries

description: Dataset with quality and quantity labour indicators and the number of refugees in host Middle Eastern countries (Egypt, Iran, Lebanon, Jordan and Turkiye) from 1991 to 2021. Data are collected from World Bank Open data and the statistics on working poverty by ILOSTAT. It includes:



	
Refugee ratio (as a percentage of the total population of each country); Official development assistance.
	
Quantitative labour market indicators: unemployment rate, labour force, number of own-account workers.
	
Qualitative labour market indicators: distribution of employment by income level in developing countries.
DOI: 10.25318/3310072701-fra
title: Obstacle le plus difficile auquel l’entreprise ou l’organisme s’attend au cours des trois prochains mois, quatrième trimestre de 2023

description: Obstacle le plus difficile auquel l’entreprise ou l’organisme s’attend au cours des trois prochains mois, selon le Système de classification des industries de l’Amérique du Nord (SCIAN), l’effectif de l’entreprise, le type d’entreprise, l’activité de l'entreprise et le propriétaire majoritaire, quatrième trimestre de 2023.
DOI: 10.21335/nmdc-1162429714
title: Havforskningsinstituttet Smoltbur 2023 Sognefjorden

description: The dataset includes Institute of Marine Research data of salmon lice counts on smolts in sentinel cages in Sognefjord, Norway in 2023.
DOI: 10.25403/upresearchdata.24680685
title: Analysis of the antifungal activity and bioactivity of gold nanoparticles conjugated with Os-C(W5)

description: These datasets consist of quantitative and qualitative data from the analysis of GNP@Os-C(W5) including spectrophotometry readings, scanning electron microscopy images and circular dichroism findings. A 535 nm band and GNPs of 13.2 ± 2.4 nm confirmed the successful synthesis of GNP@Os-C(W5). Circular dichroism identified that the secondary structure was disordered, similar to Os-C(W5). Anticandidal activity was reduced with a 50% minimum inhibitory concentration (MIC50) of 13.21 ± 0.148 μM for GNP@Os-C(W5) compared with 1.37 ± 0.076 μM for Os-C(W5) under the conditions used in this study. Additionally, the minimum fungicidal concentrations were 10 μM for Os-C(W5) and 34 μM for GNP@Os-C(W5) where the two were identified as fungistatic and fungicidal respectively. At the respective MIC50 values, both compounds caused membrane associated cellular damage. Furthermore, both were non-cytotoxic at 1.37 μM Os-C(W5) and 6.84 μM GNP@Os-C(W5) in human erythrocytes and leukocytes. For GNP@Os-C(W5) compared with Os-C(W5), antioxidant activity was reduced by several fold. Although the anticandidal activity of GNP@Os-C(W5) was reduced, the GNP conjugate showed greater resistance to trypsin degradation than melittin and Os-C(W5).
DOI: 10.25403/upresearchdata.24680685.v1
title: Analysis of the antifungal activity and bioactivity of gold nanoparticles conjugated with Os-C(W5)

description: These datasets consist of quantitative and qualitative data from the analysis of GNP@Os-C(W5) including spectrophotometry readings, scanning electron microscopy images and circular dichroism findings. A 535 nm band and GNPs of 13.2 ± 2.4 nm confirmed the successful synthesis of GNP@Os-C(W5). Circular dichroism identified that the secondary structure was disordered, similar to Os-C(W5). Anticandidal activity was reduced with a 50% minimum inhibitory concentration (MIC50) of 13.21 ± 0.148 μM for GNP@Os-C(W5) compared with 1.37 ± 0.076 μM for Os-C(W5) under the conditions used in this study. Additionally, the minimum fungicidal concentrations were 10 μM for Os-C(W5) and 34 μM for GNP@Os-C(W5) where the two were identified as fungistatic and fungicidal respectively. At the respective MIC50 values, both compounds caused membrane associated cellular damage. Furthermore, both were non-cytotoxic at 1.37 μM Os-C(W5) and 6.84 μM GNP@Os-C(W5) in human erythrocytes and leukocytes. For GNP@Os-C(W5) compared with Os-C(W5), antioxidant activity was reduced by several fold. Although the anticandidal activity of GNP@Os-C(W5) was reduced, the GNP conjugate showed greater resistance to trypsin degradation than melittin and Os-C(W5).
DOI: 10.6084/m9.figshare.24807087
title: Sea urchin (<i>Salmacis sphaeroides</i>) mariculture datasets

description: The F1 and F2 dataset comprise of the sex of 6 batches of F1 and F2 generation <i>Salmacis sphaeroides</i> cultured in the laboratory, as well as the test diameters of 8 batches of F1 and F2 juveniles aged 7 - 16 months.The experimental dataset comprise of 2 experiments looking at larval survival rates of <i>S. sphaeroides</i> under certain parameters: 1) Seawater quality and microalgae concentration2) Seawater quality and temperature
DOI: 10.6084/m9.figshare.24807087.v2
title: Sea urchin (<i>Salmacis sphaeroides</i>) mariculture datasets

description: The F1 and F2 dataset comprise of the sex of 6 batches of F1 and F2 generation <i>Salmacis sphaeroides</i> cultured in the laboratory, as well as the test diameters of 8 batches of F1 and F2 juveniles aged 7 - 16 months.The experimental dataset comprise of 2 experiments looking at larval survival rates of <i>S. sphaeroides</i> under certain parameters: 1) Seawater quality and microalgae concentration2) Seawater quality and temperature
DOI: 10.6084/m9.figshare.24807087.v1
title: Untitled Item

description: The datasets comprise of the sex-ratio of 6 batches of F1 and F2 generation sea urchins cultured in the laboratory, as well as the test diameters of 8 batches of F1 and F2 juveniles aged 7 - 16 months.
DOI: 10.25318/3310072801-fra
title: Attentes de l'entreprise ou de l'organisme quant à la durée des obstacles liés à la chaîne d'approvisionnement, quatrième trimestre de 2023

description: Attentes de l'entreprise ou de l'organisme quant à la durée des obstacles liés à la chaîne d'approvisionnement, selon le Système de classification des industries de l’Amérique du Nord (SCIAN), l’effectif de l’entreprise, le type d’entreprise, l’activité de l'entreprise et le propriétaire majoritaire, quatrième trimestre de 2023.