cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12493187.v2
title: A compiled meta-list of ten simple rules for better online conferences

description: <b>Purpose</b>There are also a total of 8 PLOS Computational Biology ‘ten simple rules’ publications describing best practices directly associated with online conferences - but there are many more relevant to scientific communication. This is composite meta-list of the rules from each of the directly relevant editorials.<br><b>Meta-data</b>Rep is the replicate from 1-8 to itemize each editorial for reference. Paper is the title of the editorials. Rules are always from 1 to 10. Description is the rule as listed in simple format from each editorial.Category is a classification proposed to sort the rules into planning, learning, technology, scientific communication, and accessibility.<br><b>Studies</b>Martin, J. L. 2014. Ten Simple Rules to Achieve Conference Speaker Gender Balance. PLOS Computational Biology <b>10</b>.<br>Gichora, N. N., S. A. Fatumo, M. V. Ngara, N. Chelbat, K. Ramdayal, K. B. Opap, G. H. Siwo, M. O. Adebiyi, A. El Gonnouni, D. Zofou, A. A. M. Maurady, E. F. Adebiyi, E. P. de Villiers, D. K. Masiga, J. W. Bizzaro, P. Suravajhala, S. C. Ommeh, and W. Hide. 2010. Ten Simple Rules for Organizing a Virtual Conference—Anywhere. PLOS Computational Biology <b>6</b>:e1000650.<br>Arnal, A., I. Epifanio, P. Gregori, and V. Martínez. 2020. Ten Simple Rules for organizing a non–real-time web conference. PLOS Computational Biology <b>16</b>:e1007667.<br>Carvalho-Silva, D., L. Garcia, S. L. Morgan, C. Brooksbank, and I. Dunham. 2018. Ten simple rules for delivering live distance training in bioinformatics across the globe using webinars. PLOS Computational Biology <b>14</b>:e1006419.<br>Garcia, L., B. Batut, M. L. Burke, M. Kuzak, F. Psomopoulos, R. Arcila, T. K. Attwood, N. Beard, D. Carvalho-Silva, A. C. Dimopoulos, V. D. del Angel, M. Dumontier, K. T. Gurwitz, R. Krause, P. McQuilton, L. Le Pera, S. L. Morgan, P. Rauste, A. Via, P. Kahlem, G. Rustici, C. W. G. van Gelder, and P. M. Palagi. 2020. Ten simple rules for making training materials FAIR. PLOS Computational Biology <b>16</b>:e1007854.<br>Fadlelmola, F. M., S. Panji, A. E. Ahmed, A. Ghouila, W. A. Akurugu, J.-B. Domelevo Entfellner, O. Souiai, N. Mulder, and H. A. R. w. g. a. m. o. t. H. A. Consortium. 2019. Ten simple rules for organizing a webinar series. PLOS Computational Biology <b>15</b>:e1006671.<br>Budd, A., H. Dinkel, M. Corpas, J. C. Fuller, L. Rubinat, D. P. Devos, P. H. Khoueiry, K. U. Foestner, F. Georgatos, F. Rowland, M. Sharan, J. X. Binder, T. Grace, K. Traphagen, A. Gristwood, and N. T. Wood. 2015. Ten Simple Rules for Organizing an Unconference. PLOS Computational Biology <b>11</b>.<br>Ekins, S., and E. O. Perlstein. 2014. Ten Simple Rules of Live Tweeting at Scientific Conferences. PLOS Computational Biology <b>10</b>.<br><br><br><br><br>
DOI: 10.21954/ou.rd.12490862
title: North Rupununi Orthomosaic_A1_12 02 2020

description: 5 cm resolution orthomap (GeoTiff format) of first block of Amoko Lake, North Rupununi, 2km x 2km quadrant. Drone survey was carried out on the 15th of February 2020.
DOI: 10.6084/m9.figshare.12490739
title: Codebook

description: Codebook used to code project
DOI: 10.6084/m9.figshare.12490718
title: Survey

description: Survey instrument used in this project
DOI: 10.6084/m9.figshare.12490697
title: LeapFrog Data Free Text Survey (2).xlsx

description: Anonymous data on evaluation of library workshops
DOI: 10.21954/ou.rd.12490862.v1
title: North Rupununi Orthomosaic_A1_12 02 2020

description: 5 cm resolution orthomap (GeoTiff format) of first block of Amoko Lake, North Rupununi, 2km x 2km quadrant. Drone survey was carried out on the 15th of February 2020.
DOI: 10.6084/m9.figshare.12490811.v1
title: Coord. of tested species to be mapped.xlsx

description: coordinates of the locations where the museum samples were collected
DOI: 10.6084/m9.figshare.12490598
title: Standard Errors for Nonparametric Regression

description: This paper proposes five pointwise consistent and asymptotic normal estimators of the asymptotic variance function of the Nadaraya-Watson kernel estimator for nonparametric regression. The proposed estimators are constructed based on the first-stage nonparametric residuals, and their asymptotic properties are established under the assumption that the same bandwidth sequences are used throughout, which mimics what researchers do in practice while making derivations more complicated instead. A limited Monte Carlo experiment demonstrates that the proposed estimators possess smaller pointwise variability in small samples than the pair and wild bootstrap estimators which are commonly used in practice.
DOI: 10.6084/m9.figshare.12490589
title: Smith-etal-PLOSONE 2020-dataset

description: Data sets and statistical analyses for triad size and swim behaviour quantification.
DOI: 10.6084/m9.figshare.12490598.v2
title: Standard Errors for Nonparametric Regression

description: This paper proposes five pointwise consistent and asymptotic normal estimators of the asymptotic variance function of the Nadaraya-Watson kernel estimator for nonparametric regression. The proposed estimators are constructed based on the first-stage nonparametric residuals, and their asymptotic properties are established under the assumption that the same bandwidth sequences are used throughout, which mimics what researchers do in practice while making derivations more complicated instead. A limited Monte Carlo experiment demonstrates that the proposed estimators possess smaller pointwise variability in small samples than the pair and wild bootstrap estimators which are commonly used in practice.
DOI: 10.6084/m9.figshare.12490457
title: Dataset: Tracking the Twitter attention around the research efforts on the COVID-19 pandemic

description: Datasets of the figures in the paper "Tracking the Twitter attention around the research effort on the COVID-19 pandemic".
DOI: 10.6084/m9.figshare.12490457.v1
title: Dataset: Tracking the Twitter attention around the research efforts on the COVID-19 pandemic

description: Datasets of the figures in the paper "Tracking the Twitter attention around the research effort on the COVID-19 pandemic".
DOI: 10.6084/m9.figshare.12490445
title: An enigmatic carnivorous plant: ancient divergence of Drosophyllaceae but recent differentiation of <i>Drosophyllum lusitanicum</i> across the Strait of Gibraltar

description: Drosophyllaceae is the only plant family endemic to the Mediterranean Floristic Region. It includes a single species, the carnivorous <i>Drosophyllum lusitanicum</i>, which is hypothesised to be a relict plant. Our aim here is to reconstruct the evolutionary history of <i>Drosophyllum</i> to evaluate whether the African-European disjunction across the Strait of Gibraltar is the result of vicariance or long-distance dispersal, and to assess the role of the Strait of Gibraltar area in the long-term persistence of this species. A time-calibrated phylogeny based on nuclear ITS sequences estimated a mid-Eocene to mid-Miocene age (19–44 Mya) for the common ancestor of Drosophyllaceae and its sister clade (Ancistrocladaceae-Dioncophyllaceae). In contrast, differentiation of ITS lineages of <i>Drosophyllum</i> occurred in the Pleistocene, after the opening of the Strait of Gibraltar (ca. 5 Mya). A haplotype network built using two plastid DNA regions revealed six haplotypes in <i>Drosophyllum</i>, five of which occur in the Strait of Gibraltar area. Four of the six haplotypes were present in both European and African populations. Therefore, although Drosophyllaceae diverged from the closest relatives in ancient times, the current distribution of <i>Drosophyllum</i> is relatively recent (Pleistocene). Given that the Strait of Gibraltar was already open in the Pliocene, the disjunct distribution of this species between Europe and Africa appears to be the result of multiple events of long-distance dispersal. Species distribution modelling (SDM) was used to reconstruct the potential distribution of <i>Drosophyllum</i> throughout the late Quaternary (last interglacial, Last Glacial Maximum, mid-Holocene and present), which revealed long-term persistence around the Strait of Gibraltar and in the south-western Iberian Peninsula. The Strait of Gibraltar area and the south-western Iberian Peninsula may have shared similar climatic conditions, and thus acted as refugia for <i>Drosophyllum</i> throughout the late Quaternary.
DOI: 10.6084/m9.figshare.12490439
title: Unexpected but unsurprising lineage diversity within the most widespread Neotropical crocodilian genus <i>Caiman</i> (Crocodylia, Alligatoridae)

description: Species discovery methods utilizing coalescent-based approaches are powerful tools for detecting cryptic lineages within morphological conservative groups, thus being an important methodology of integrative taxonomic research. Crocodilians are a classic example of morphologically conserved group where coalescence-based species delimitation analyses resulted in the discovery of cryptic lineages and potentially new species. In this study, we used several single locus species discovery methods to analyze the phylogenetic diversity of the most widespread alligatorid genus of the Neotropics, the genus <i>Caiman.</i> We analyzed 479 specimens representing all named taxa, with the exception of <i>Caiman crocodilus apaporiensis</i>, and known geographic distribution of these taxa. We observed high lineage diversity within the <i>Caiman crocodilus</i>/<i>yacare</i> complex, ranging from 7 to 10 lineages, and three lineages within <i>Caiman latirostris</i>. We also provide a new dated phylogeny for all the delimited lineages. Oligocene and Miocene events triggered the diversification of the major lineages, with latter Pleistocene events influencing the final diversification of the genus. We demonstrate that the discovered lineages within the <i>Caiman</i> complex are compatible with being species and as such are candidates for an integrated taxonomic analysis. However, it is important to highlight that independent of the future recognition of these lineages as species, it is extremely important to protect these cryptic lineages as unique evolutionary entities, many of which are highly threatened by habitat loss from dam construction projects, tailing dam collapses, mining, agriculture and agricultural run-off across all of South America.
DOI: 10.6084/m9.figshare.12490445.v1
title: An enigmatic carnivorous plant: ancient divergence of Drosophyllaceae but recent differentiation of <i>Drosophyllum lusitanicum</i> across the Strait of Gibraltar

description: Drosophyllaceae is the only plant family endemic to the Mediterranean Floristic Region. It includes a single species, the carnivorous <i>Drosophyllum lusitanicum</i>, which is hypothesised to be a relict plant. Our aim here is to reconstruct the evolutionary history of <i>Drosophyllum</i> to evaluate whether the African-European disjunction across the Strait of Gibraltar is the result of vicariance or long-distance dispersal, and to assess the role of the Strait of Gibraltar area in the long-term persistence of this species. A time-calibrated phylogeny based on nuclear ITS sequences estimated a mid-Eocene to mid-Miocene age (19–44 Mya) for the common ancestor of Drosophyllaceae and its sister clade (Ancistrocladaceae-Dioncophyllaceae). In contrast, differentiation of ITS lineages of <i>Drosophyllum</i> occurred in the Pleistocene, after the opening of the Strait of Gibraltar (ca. 5 Mya). A haplotype network built using two plastid DNA regions revealed six haplotypes in <i>Drosophyllum</i>, five of which occur in the Strait of Gibraltar area. Four of the six haplotypes were present in both European and African populations. Therefore, although Drosophyllaceae diverged from the closest relatives in ancient times, the current distribution of <i>Drosophyllum</i> is relatively recent (Pleistocene). Given that the Strait of Gibraltar was already open in the Pliocene, the disjunct distribution of this species between Europe and Africa appears to be the result of multiple events of long-distance dispersal. Species distribution modelling (SDM) was used to reconstruct the potential distribution of <i>Drosophyllum</i> throughout the late Quaternary (last interglacial, Last Glacial Maximum, mid-Holocene and present), which revealed long-term persistence around the Strait of Gibraltar and in the south-western Iberian Peninsula. The Strait of Gibraltar area and the south-western Iberian Peninsula may have shared similar climatic conditions, and thus acted as refugia for <i>Drosophyllum</i> throughout the late Quaternary.
DOI: 10.6084/m9.figshare.12490436
title: A new section, <i>Lactifluus</i> section <i>Neotropicus</i> (Russulaceae), and two new <i>Lactifluus</i> species from the Atlantic Forest, Brazil

description: <i>Lactifluus</i> is a monophyletic genus of ectomycorrhizal fungi with about 200 described species classified in four subgenera: <i>L.</i> subg. <i>Gymnocarpus</i>, <i>L.</i> subg. <i>Lactariopsis</i>, <i>L.</i> subg. <i>Lactifluus</i>, and <i>L.</i> subg. <i>Pseudogymnocarpus</i>. Currently <i>L.</i> subg. <i>Lactariopsis</i> is considered monophyletic with approximately 57 species described and classified in four sections: <i>Albati</i>, <i>Edules</i>, <i>Lactariopsis</i>, and <i>Russulopsidei.</i> There are few species of <i>L.</i> subg. <i>Lactariopsis</i> described from the Neotropical region, however local mycologists commonly collect specimens of this subgenus during their mycological surveys. The goals of the present study are to evaluate the phylogenetic and morphological relationships of the species from <i>L.</i> subg. <i>Lactariopsis</i> found in Brazil, to contribute to the knowledge of <i>Lactifluus</i> in Neotropical ecosystems by describing a new section in this subgenus and two new species from Brazil, and to document <i>L. neotropicus</i> as a new record from Brazil. Based on morphological and phylogenetic evidence we propose <i>Lactifluus</i> sect. <i>Neotropicus</i> as a new section and <i>Lactifluus catarinensis</i> and <i>L. marielleae</i> as two new species in this section. We provide a key to the species of <i>L.</i> sect. <i>Neotropicus</i>, which is shown to be a monophyletic group of Neotropical species within <i>L.</i> subg. <i>Lactariopsis</i>. The most striking characteristic of several species in <i>L.</i> subg. <i>Lactariopsis</i> is the secondary angiocarpic development, not present in the other subgenera. Species with a secondary veil can be found in two lineages that diversified more recently than the rest of the genus: <i>L.</i> sect. <i>Lactariopsis</i> and <i>L.</i> sect. <i>Neotropicus.</i> Species that show morphological affinities with the two new species in <i>L</i>. sect. <i>Neotropicus</i> described here are commonly found and we expect a greater diversity to be revealed of this section in the Neotropical region.
DOI: 10.6084/m9.figshare.12490439.v1
title: Unexpected but unsurprising lineage diversity within the most widespread Neotropical crocodilian genus <i>Caiman</i> (Crocodylia, Alligatoridae)

description: Species discovery methods utilizing coalescent-based approaches are powerful tools for detecting cryptic lineages within morphological conservative groups, thus being an important methodology of integrative taxonomic research. Crocodilians are a classic example of morphologically conserved group where coalescence-based species delimitation analyses resulted in the discovery of cryptic lineages and potentially new species. In this study, we used several single locus species discovery methods to analyze the phylogenetic diversity of the most widespread alligatorid genus of the Neotropics, the genus <i>Caiman.</i> We analyzed 479 specimens representing all named taxa, with the exception of <i>Caiman crocodilus apaporiensis</i>, and known geographic distribution of these taxa. We observed high lineage diversity within the <i>Caiman crocodilus</i>/<i>yacare</i> complex, ranging from 7 to 10 lineages, and three lineages within <i>Caiman latirostris</i>. We also provide a new dated phylogeny for all the delimited lineages. Oligocene and Miocene events triggered the diversification of the major lineages, with latter Pleistocene events influencing the final diversification of the genus. We demonstrate that the discovered lineages within the <i>Caiman</i> complex are compatible with being species and as such are candidates for an integrated taxonomic analysis. However, it is important to highlight that independent of the future recognition of these lineages as species, it is extremely important to protect these cryptic lineages as unique evolutionary entities, many of which are highly threatened by habitat loss from dam construction projects, tailing dam collapses, mining, agriculture and agricultural run-off across all of South America.
DOI: 10.6084/m9.figshare.12490436.v1
title: A new section, <i>Lactifluus</i> section <i>Neotropicus</i> (Russulaceae), and two new <i>Lactifluus</i> species from the Atlantic Forest, Brazil

description: <i>Lactifluus</i> is a monophyletic genus of ectomycorrhizal fungi with about 200 described species classified in four subgenera: <i>L.</i> subg. <i>Gymnocarpus</i>, <i>L.</i> subg. <i>Lactariopsis</i>, <i>L.</i> subg. <i>Lactifluus</i>, and <i>L.</i> subg. <i>Pseudogymnocarpus</i>. Currently <i>L.</i> subg. <i>Lactariopsis</i> is considered monophyletic with approximately 57 species described and classified in four sections: <i>Albati</i>, <i>Edules</i>, <i>Lactariopsis</i>, and <i>Russulopsidei.</i> There are few species of <i>L.</i> subg. <i>Lactariopsis</i> described from the Neotropical region, however local mycologists commonly collect specimens of this subgenus during their mycological surveys. The goals of the present study are to evaluate the phylogenetic and morphological relationships of the species from <i>L.</i> subg. <i>Lactariopsis</i> found in Brazil, to contribute to the knowledge of <i>Lactifluus</i> in Neotropical ecosystems by describing a new section in this subgenus and two new species from Brazil, and to document <i>L. neotropicus</i> as a new record from Brazil. Based on morphological and phylogenetic evidence we propose <i>Lactifluus</i> sect. <i>Neotropicus</i> as a new section and <i>Lactifluus catarinensis</i> and <i>L. marielleae</i> as two new species in this section. We provide a key to the species of <i>L.</i> sect. <i>Neotropicus</i>, which is shown to be a monophyletic group of Neotropical species within <i>L.</i> subg. <i>Lactariopsis</i>. The most striking characteristic of several species in <i>L.</i> subg. <i>Lactariopsis</i> is the secondary angiocarpic development, not present in the other subgenera. Species with a secondary veil can be found in two lineages that diversified more recently than the rest of the genus: <i>L.</i> sect. <i>Lactariopsis</i> and <i>L.</i> sect. <i>Neotropicus.</i> Species that show morphological affinities with the two new species in <i>L</i>. sect. <i>Neotropicus</i> described here are commonly found and we expect a greater diversity to be revealed of this section in the Neotropical region.
DOI: 10.6084/m9.figshare.12490253
title: Plazas (2020) Collaborative or conflicting role of select and reject control in equivalence

description: Data from the manuscript: "Do select and reject control play a collaborative or conflicting role in the emergence of equivalence?" submitted to revision. There are eight groups, each trained on different configurations of select and reject control, and tested on reflexivity, symmetry, and transitivity for the emergence of stimulus equivalence relations.
DOI: 10.6084/m9.figshare.12490271
title: Figures Data

description: Data from Toubal et al. Nature Communications 2020<br>
DOI: 10.6084/m9.figshare.12490271.v1
title: Figures Data

description: Data from Toubal et al. Nature Communications 2020<br>
DOI: 10.6084/m9.figshare.12490064
title: Metadata record for: Laboratory-scale hydraulic fracturing dataset for benchmarking of Enhanced Geothermal System simulation tools

description: This dataset contains key characteristics about the data described in the Data Descriptor Laboratory-scale hydraulic fracturing dataset for benchmarking of Enhanced Geothermal System simulation tools. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12490064.v1
title: Metadata record for: Laboratory-scale hydraulic fracturing dataset for benchmarking of Enhanced Geothermal System simulation tools

description: This dataset contains key characteristics about the data described in the Data Descriptor Laboratory-scale hydraulic fracturing dataset for benchmarking of Enhanced Geothermal System simulation tools. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12490013
title: ASSESSMENT OF HEAVY METALS (AS, CU, MN AND ZN) IN RESIDENTS OF QUARRY HOST COMMUNITIES OF AGO IWOYE, OGUN STATE OF NIGERIA.xlsx

description: The data was derived from estimation of serum Arsenic, Copper, Manganese, Zinc in residents of quarry host communities and reference communities in Ago Iwoye, Ogun state, Nigeria. The measurement was done with Acetylene Flame Atomic Absorption Spectrophotometer (AAS)
DOI: 10.6084/m9.figshare.12489956
title: R code from Mobility and its sensitivity to fitness differences determine consumer–resource distributions

description: An animal's movement rate (mobility) and its ability to perceive fitness gradients (fitness sensitivity) determine how well it can exploit resources. Previous models have examined mobility and fitness sensitivity separately and found that mobility, modelled as random movement, prevents animals from staying in high-quality patches, leading to a departure from an ideal free distribution (IFD). However, empirical work shows that animals with higher mobility can more effectively collect environmental information and better sense patch quality, especially when the environment is frequently changed by human activities. Here, we model, for the first time, this positive correlation between mobility and fitness sensitivity and measure its consequences for the populations of a consumer and its resource. In the absence of consumer demography, mobility alone had no effect on system equilibria, but a positive correlation between mobility and fitness sensitivity could produce an IFD. In the presence of consumer demography, lower levels of mobility prevented the system from approaching an IFD due to the mixing of consumers between patches. However, when positively correlated with fitness sensitivity, high mobility led to an IFD. Our study demonstrates that the expected covariation of animal movement attributes can drive broadly theorized consumer–resource patterns across space and time and could underlie the role of consumers in driving spatial heterogeneity in resource abundance.
DOI: 10.6084/m9.figshare.12490013.v1
title: ASSESSMENT OF HEAVY METALS (AS, CU, MN AND ZN) IN RESIDENTS OF QUARRY HOST COMMUNITIES OF AGO IWOYE, OGUN STATE OF NIGERIA.xlsx

description: The data was derived from estimation of serum Arsenic, Copper, Manganese, Zinc in residents of quarry host communities and reference communities in Ago Iwoye, Ogun state, Nigeria. The measurement was done with Acetylene Flame Atomic Absorption Spectrophotometer (AAS)