cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/3btrkch437.1
title: Forced-choice and free-choice trials in response priming with moving primes

description: Basically, we conducted a response priming experiment with moving row-of-dots-primes (motion direction: leftwards, rightwards, neutral [to the center or the boarders of the screen; inwards or outwards, respectively]; see Bermeitinger, 2013). In forced-choice trials, the target was a directional arrow (&lt;&lt; or &gt;&gt;) which has to be classified (leftwards or rightwards). In free-choice trials, the target was an ambigous arrow composition (&lt;&gt; or &gt;&lt; targets; outwards motions and &lt;&gt; targets) and to trials with incompatible neutral primes (i.e., inwards motions and &lt;&gt; targets; outwards motions and &gt;&lt; targets). Last but not least, we analyzed differences between &gt;&lt; and &lt;&gt; targets, focusing on leftwards and rightwards prime motions in free-choice trials. According to Cole and Kuhn (2010), responses should be faster or slower depending on the number of attentional turns needed between prime and response. For &lt;&gt; targets, we thus expected faster and more likely prime-congruent (than prime-incongruent) responses. In contrast, a &gt;&lt; target should result in faster and more probable prime-incongruent responses. Results: In forced-choice trials: Compatible trials = primes and targets move/point in the same direction; incompatible trials: primes and targets move/point in opposite directions; In free-choice trials, congruency was determined by the responses given, i.e. congruent response = left/right button press after leftwards/rightwards motion; incongruent response = left/right button press after rightwards/leftwards motion. Compatibility/congruency effect = response time in incompatible/incongruent trials - response time in compatible/congruent trials. Stimulus Onset Asynchrony (SOA) = time from the beginning of the prime display to the beginning of the target display We found (non-significant) PCEs in the short SOA (for forced-choice and free-choice trials) and (significant) NCEs in the longer SOA (for forced-choice and free-choice trials). There were no congruency effects regarding neutral conditions (i.e. &lt;&gt; and outwards motion; &gt;&lt; and inwards motion). For directional motions in free-choice trials, we found (non-significantly) faster prime-congruent than prime-incongruent responses after &gt;&lt; targets and the reverse (significant) result after &lt;&gt; targets (which is contrary to Cole & Kuhn, 2010).
DOI: 10.17632/d3bpbxnhpx.1
title: WNL score difference

description: Opracowanie innowacyjnego rozwiązania w postaci Inteligentnego Wirtualnego Asystenta Nauki przez firmę bethink sp. z o.o.
DOI: 10.17632/35g7t55h4c.1
title: Simultaneous Detection and Mutation Surveillance of SARS-CoV-2 and co-infections of multiple respiratory viruses by Rapid field-deployable sequencing. Chongwei et al.

description: supplementary files 1-3 and supplementary table for the manuscript.
DOI: 10.17632/xkfv3yycd2.1
title: Interviews

description: This data contains interviews with the participants
DOI: 10.17632/fm7v43jrbk.4
title: Longitudinal profiling of respiratory and systemic immune response reveals myeloid cell-driven lung inflammation in severe COVID-19. Szabo et al.

description: Supplementary data files from 'Longitudinal profiling of respiratory and systemic immune response reveals myeloid cell-driven lung inflammation in severe COVID-19 by Szabo et al. Accepted for publication in Immunity (Cell Press).
DOI: 10.25346/s6/5fnhcb/uewndt
title: Paso Data Record 14.4.tab
DOI: 10.25346/s6/5fnhcb/fgqqdm
title: Paso Data Record 14.4.tab
DOI: 10.5281/zenodo.4592976
title: The protected physiological state of intracellular Salmonella enterica persisters reduces host cell-imposed stress

description: These are the original data files for flow cytometry and microscopy corresponding to Fig. 2, FIg. 3, Fig. 4, Fig. 5 and Fig. 6 of our publication. Abstract During infectious diseases, small subpopulations of bacterial pathogens enter a non-replicating (NR) state tolerant to antibiotics. After phagocytosis, intracellular <em>Salmonella enterica </em>serovar Typhimurium (STM) forms persisters able to subvert immune defenses of the host. Physiological state and sensing properties of persisters are difficult to analyze, thus poorly understood. Here we deploy fluorescent protein reporters to detect intracellular NR persister cells, and to monitor their stress response on single cell level. We determined metabolic properties of NR STM during infection and demonstrate that NR STM persisters sense their environment and respond to stressors. Since persisters showed a lower stress response compared to replicating (R) STM, which was not consequence of lower metabolic capacity, the persistent state of STM serves as protective niche. Up to 95% of NR STM were metabolically active at beginning of infection, very similar to metabolic capacity of R STM. Sensing and reacting to stress with constant metabolic activity supports STM to create a more permissive environment for recurrent infections. Stress sensing and response of persister may be targeted by new antimicrobial approaches.
DOI: 10.5281/zenodo.4592975
title: The protected physiological state of intracellular Salmonella enterica persisters reduces host cell-imposed stress

description: These are the original data files for flow cytometry and microscopy corresponding to Fig. 2, FIg. 3, Fig. 4, Fig. 5 and Fig. 6 of our publication. Abstract During infectious diseases, small subpopulations of bacterial pathogens enter a non-replicating (NR) state tolerant to antibiotics. After phagocytosis, intracellular <em>Salmonella enterica </em>serovar Typhimurium (STM) forms persisters able to subvert immune defenses of the host. Physiological state and sensing properties of persisters are difficult to analyze, thus poorly understood. Here we deploy fluorescent protein reporters to detect intracellular NR persister cells, and to monitor their stress response on single cell level. We determined metabolic properties of NR STM during infection and demonstrate that NR STM persisters sense their environment and respond to stressors. Since persisters showed a lower stress response compared to replicating (R) STM, which was not consequence of lower metabolic capacity, the persistent state of STM serves as protective niche. Up to 95% of NR STM were metabolically active at beginning of infection, very similar to metabolic capacity of R STM. Sensing and reacting to stress with constant metabolic activity supports STM to create a more permissive environment for recurrent infections. Stress sensing and response of persister may be targeted by new antimicrobial approaches.
DOI: 10.5258/soton/d1665
title: Dataset for: Sensitivity to haptic sound-localisation cues

description: This dataset supports the publication: Fletcher, Mark, Zgheib, Jana & Perry, Samuel (2020). Haptic sound-localisation for use in cochlear implant and hearing-aid users. Scientific Reports.
DOI: 10.15468/7mgqbu
title: Oxynoemacheilus marunensis, a new loach species from the Persian Gulf basin with remarks on O. frenatus (Teleostei: Nemacheilidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sayyadzadeh, Golnaz, Esmaeili, Hamid Reza (2020): Oxynoemacheilus marunensis, a new loach species from the Persian Gulf basin with remarks on O. frenatus (Teleostei: Nemacheilidae). Zootaxa 4885 (2): 189-206, DOI: https://doi.org/10.11646/zootaxa.4885.2.2
DOI: 10.5258/soton/d1659
title: Dataset for: Partner selection in self-organised wireless sensor networks for opportunistic energy negotiation: A multi-armed bandit based approach

description: This dataset supports the article entitled "Partner selection in self-organised wireless sensor networks for opportunistic energy negotiation: A multi-armed bandit based approach" in Ad Hoc Networks Journal.
DOI: 10.21227/ddyc-jy31
title: ElectroMagnetic Field

description: Pvt page under construction Laplace Equation in gives the.. Maxwell's equations,For this, software tools from professors/lecturers given on their website is also used ,
DOI: 10.6084/m9.figshare.13325744
title: Pangenome genomes database for Anvio

description: This is the profiles database of our Anvi'o pangenome functional enrichment analysis. We checked for significantly enriched genes between different groupings of locations and hosts.
DOI: 10.6084/m9.figshare.13325723
title: Pangenome profiles database for Anvio

description: This is the profiles database of our Anvi'o pangenome functional enrichment analysis. We checked for significantly enriched genes between different groupings of locations and hosts.
DOI: 10.6084/m9.figshare.13325723.v1
title: Pangenome profile

description: This is the profiles database of our Anvi'o pangenome functional enrichment analysis. We checked for significantly enriched genes between different groupings of locations and hosts.
DOI: 10.5281/zenodo.4304285
title: An avian urban morphotype: how the city environment shapes great tit morphology at different life stages

description: Data and script .
DOI: 10.5281/zenodo.4304284
title: An avian urban morphotype: how the city environment shapes great tit morphology at different life stages

description: Data and script .
DOI: 10.5281/zenodo.4304049
title: Coastal Digital Elevation Models and Transects of the Reef Island Fuvahmulah, the Maldives

description: The data contains <strong>two Digital Elevation Models</strong> (DEMs) of the coastal zone in the south-east of <strong>Fuvahmulah, the Maldives</strong> (location: latitude -0.30° and longitude 73.43°). DEM files are in the file format <em>*.tif</em> (raster data georeferenced to WGS84). The DEMs contain elevation data on the area adjacent to the seaport. One DEM was measured in 2017, the other in 2019. The 2017 DEM is based on aerial imagery, recorded with the consumer-grade unmanned aerial vehicle (UAV, or drone) DJI Phantom 4 in 2017, while the 2019 DEM was recorded with a DJI Phantom 4 Pro. The data was then processed in <em>Agisoft Photoscan</em> with a Structure-from-Motion - MultiView Stereo algorithm (SfM-MVS).<br> <br> In addition, the data set contains <strong>elevation</strong> and <strong>location data</strong> of 4 transects from sections along the east coast of Fuvahmulah. The data is stored in <em>*.csv </em>files, containing longitude, latitude, height and distance.<br> <br> Finally, there are two further data files with <strong>gridded topographic and bathymetric data</strong>, ready for use in the depth-integrated <strong>Boussinesq type model <em>BOSZ</em></strong> (see Roeber and Cheung, 2012; doi.org/10.1016/j.coastaleng.2012.06.001). Currently, the numerical wave model, incorporates lateral wave makers, so that the elevation data needs to be rotated to account for different wave directions \(\theta\). The bathymetry was recorded with a <em>Dr. Fahrentholz LituBox 15/200</em> and truncated to 200 meters water depth. The coastal topography results from coastal DEMs, while the island's mainland is set to about 2-3 meters (no elevation information was available for the island's inland area). The data was gridded and interpolated onto the grid with <em>The Generic Mapping Tools (GMT)</em>. The grid size is 7.5 x 7.5 meter.<br> The files are in <em>MATLAB® 5.0</em> file format <em>*.mat</em>, containing the variables '<em>length</em>' and '<em>width</em>' of the domain in meters, '<em>X</em>' and '<em>Y</em>' (computation grid \(x, y\) in degrees \(^\circ\) longitude and latitude), as well as '<em>BATHY</em>', being the elevation data for the X,Y grid. In addition, friction values as used in the model is stored in the variable '<em>Friction</em>', as well as the grid increments '<em>DX</em>' and '<em>DY</em>' (\(\Delta x\) and \(\Delta y\) in degrees \(^\circ\) longitude and latitude). Each folder contains either a README-file or Jupyter Notebook (Python 3). The Notebooks allow the user to access and view the files (Python 3 and Jupyter Notebook installation required)
description: The data was recorded within field campaigns on the reef island Fuvahmulah, the Maldives. The research team worked in the Priority Program (SPP-1889) 'Regional Sea Level Change and Society (SeaLevel)', and acknowledges funding from the German Research Foundation (DFG; grant number SCHL 503/17-1).
DOI: 10.5281/zenodo.4304048
title: Coastal Digital Elevation Models and Transects of the Reef Island Fuvahmulah, the Maldives

description: The data contains <strong>two Digital Elevation Models</strong> (DEMs) of the coastal zone in the south-east of <strong>Fuvahmulah, the Maldives</strong> (location: latitude -0.30° and longitude 73.43°). DEM files are in the file format <em>*.tif</em> (raster data georeferenced to WGS84). The DEMs contain elevation data on the area adjacent to the seaport. One DEM was measured in 2017, the other in 2019. The 2017 DEM is based on aerial imagery, recorded with the consumer-grade unmanned aerial vehicle (UAV, or drone) DJI Phantom 4 in 2017, while the 2019 DEM was recorded with a DJI Phantom 4 Pro. The data was then processed in <em>Agisoft Photoscan</em> with a Structure-from-Motion - MultiView Stereo algorithm (SfM-MVS).<br> <br> In addition, the data set contains <strong>elevation</strong> and <strong>location data</strong> of 4 transects from sections along the east coast of Fuvahmulah. The data is stored in <em>*.csv </em>files, containing longitude, latitude, height and distance.<br> <br> Finally, there are two further data files with <strong>gridded topographic and bathymetric data</strong>, ready for use in the depth-integrated <strong>Boussinesq type model <em>BOSZ</em></strong> (see Roeber and Cheung, 2012; doi.org/10.1016/j.coastaleng.2012.06.001). Currently, the numerical wave model, incorporates lateral wave makers, so that the elevation data needs to be rotated to account for different wave directions \(\theta\). The bathymetry was recorded with a <em>Dr. Fahrentholz LituBox 15/200</em> and truncated to 200 meters water depth. The coastal topography results from coastal DEMs, while the island's mainland is set to about 2-3 meters (no elevation information was available for the island's inland area). The data was gridded and interpolated onto the grid with <em>The Generic Mapping Tools (GMT)</em>. The grid size is 7.5 x 7.5 meter.<br> The files are in <em>MATLAB® 5.0</em> file format <em>*.mat</em>, containing the variables '<em>length</em>' and '<em>width</em>' of the domain in meters, '<em>X</em>' and '<em>Y</em>' (computation grid \(x, y\) in degrees \(^\circ\) longitude and latitude), as well as '<em>BATHY</em>', being the elevation data for the X,Y grid. In addition, friction values as used in the model is stored in the variable '<em>Friction</em>', as well as the grid increments '<em>DX</em>' and '<em>DY</em>' (\(\Delta x\) and \(\Delta y\) in degrees \(^\circ\) longitude and latitude). Each folder contains either a README-file or Jupyter Notebook (Python 3). The Notebooks allow the user to access and view the files (Python 3 and Jupyter Notebook installation required)
description: The data was recorded within field campaigns on the reef island Fuvahmulah, the Maldives. The research team worked in the Priority Program (SPP-1889) 'Regional Sea Level Change and Society (SeaLevel)', and acknowledges funding from the German Research Foundation (DFG; grant number SCHL 503/17-1).
DOI: 10.25403/upresearchdata.13311494
title: Perceptions about the reliability of goodwill and its effects on post acquisition performance

description: Responses for an online questionnaire for the study.
DOI: 10.25403/upresearchdata.13311494.v1
title: Perceptions about the reliability of goodwill and its effects on post acquisition performance

description: Responses for an online questionnaire for the study.
DOI: 10.6084/m9.figshare.13325804
title: Supplementary Material for: Antigen Expression Varies Significantly between Molecular Subgroups of Acute Myeloid Leukemia Patients: Clinical Applicability Is Hampered by Establishment of Relevant Cutoffs

description: <b><i>Introduction:</i></b> In this single-center study of 268 acute myeloid leukemia (AML) patients, we have tested if a subset of 4 routinely employed immunophenotypic stem cell-associated markers correlated with the presence of recurrently mutated genes and if the markers were predictive for mutational status. <b><i>Methods:</i></b> Immunophenotypic data from 268 diagnostic AML samples obtained in 2009–2018 were analyzed retrospectively for the antigens CD34, CD117, CD123, and CLEC12A. Correlation between immunophenotypes and mutations was analyzed by Fischer’s exact test. Clinical applicability of the markers for predicting mutational status was evaluated by receiver operating characteristics analyses, where an area under the curve (AUC) of at least 0.85 was accepted as clinically relevant. <b><i>Results:</i></b> For a number of genes, the antigen expression differed significantly between mutated and wild-type gene expression. Despite low AUCs, CD123 and CLEC12A correlated with <i>FLT3</i>+<i>NPM1−</i> and <i>FLT3</i>+<i>NPM1</i>+. Three subsets met the AUC requirements (CD34+, CD34+CD117+, and CD34−CD117+) for predicting <i>FLT3−NPM1</i>+ or <i>FLT3</i>+<i>NPM1</i>+. <b><i>Conclusion:</i></b> The value of immunophenotypes as surrogate markers for mutational status in AML seems limited when employing CD123 and CLEC12A in combination with CD34 and CD117. Defining relevant cutoffs for given markers is challenging and hampered by variation between laboratories and patient groups.
DOI: 10.6084/m9.figshare.13325804.v1
title: Supplementary Material for: Antigen Expression Varies Significantly between Molecular Subgroups of Acute Myeloid Leukemia Patients: Clinical Applicability Is Hampered by Establishment of Relevant Cutoffs

description: <b><i>Introduction:</i></b> In this single-center study of 268 acute myeloid leukemia (AML) patients, we have tested if a subset of 4 routinely employed immunophenotypic stem cell-associated markers correlated with the presence of recurrently mutated genes and if the markers were predictive for mutational status. <b><i>Methods:</i></b> Immunophenotypic data from 268 diagnostic AML samples obtained in 2009–2018 were analyzed retrospectively for the antigens CD34, CD117, CD123, and CLEC12A. Correlation between immunophenotypes and mutations was analyzed by Fischer’s exact test. Clinical applicability of the markers for predicting mutational status was evaluated by receiver operating characteristics analyses, where an area under the curve (AUC) of at least 0.85 was accepted as clinically relevant. <b><i>Results:</i></b> For a number of genes, the antigen expression differed significantly between mutated and wild-type gene expression. Despite low AUCs, CD123 and CLEC12A correlated with <i>FLT3</i>+<i>NPM1−</i> and <i>FLT3</i>+<i>NPM1</i>+. Three subsets met the AUC requirements (CD34+, CD34+CD117+, and CD34−CD117+) for predicting <i>FLT3−NPM1</i>+ or <i>FLT3</i>+<i>NPM1</i>+. <b><i>Conclusion:</i></b> The value of immunophenotypes as surrogate markers for mutational status in AML seems limited when employing CD123 and CLEC12A in combination with CD34 and CD117. Defining relevant cutoffs for given markers is challenging and hampered by variation between laboratories and patient groups.
DOI: 10.6084/m9.figshare.13325867
title: Supplementary Material for: Prognostic Impact of Peripheral Blood T-Cell Subsets at the Time of Diagnosis on Survival in Patients with Diffuse Large B-Cell Lymphoma

description: <b><i>Introduction:</i></b> The effects of lymphocyte subtypes, including helper (Th), natural killer (NK), and regulatory (Treg) cells, and other T-cell subtypes on treatment outcomes in diffuse large B-cell lymphoma (DLBCL) patients are not clearly established. <b><i>Methods:</i></b> Among 151 consecutive patients diagnosed with DLBCL, we collected peripheral blood samples at diagnosis from 91 patients who received at least 1 cycle of R-CHOP (cyclophosphamide, doxorubicin, vincristine, and prednisone plus rituximab) chemotherapy and analyzed lymphocyte subsets by flow cytometry. <b><i>Results:</i></b> DLBCL patients had a higher proportion of CD4<sup>+</sup>CD25<sup>+</sup> Treg (<i>p</i> &lt; 0.001) and lower absolute lymphocyte count than those of healthy controls. Lymphopenia at diagnosis was associated with advanced-stage disease (<i>p</i> = 0.001), a high-intermediate/high-risk International Prognostic Index (IPI) (<i>p</i> &lt; 0.001), and older age (<i>p</i> = 0.060). High-intermediate/high-risk IPI, high proportion of CD3<sup>+</sup>CD4<sup>+</sup> Th cells, and extranodal site ≥2 correlated with unfavorable prognostic factors for survival. High proportion of Th cells was associated with fewer cytotoxic T cells and NK cells at the time of diagnosis. <b><i>Conclusion:</i></b> This study showed an association between circulating lymphocyte subsets including Th cells, Tregs, and NK cells and clinical outcomes in DLBCL; however, further confirmation is needed via prospective trials.
DOI: 10.6084/m9.figshare.13325867.v1
title: Supplementary Material for: Prognostic Impact of Peripheral Blood T-Cell Subsets at the Time of Diagnosis on Survival in Patients with Diffuse Large B-Cell Lymphoma

description: <b><i>Introduction:</i></b> The effects of lymphocyte subtypes, including helper (Th), natural killer (NK), and regulatory (Treg) cells, and other T-cell subtypes on treatment outcomes in diffuse large B-cell lymphoma (DLBCL) patients are not clearly established. <b><i>Methods:</i></b> Among 151 consecutive patients diagnosed with DLBCL, we collected peripheral blood samples at diagnosis from 91 patients who received at least 1 cycle of R-CHOP (cyclophosphamide, doxorubicin, vincristine, and prednisone plus rituximab) chemotherapy and analyzed lymphocyte subsets by flow cytometry. <b><i>Results:</i></b> DLBCL patients had a higher proportion of CD4<sup>+</sup>CD25<sup>+</sup> Treg (<i>p</i> &lt; 0.001) and lower absolute lymphocyte count than those of healthy controls. Lymphopenia at diagnosis was associated with advanced-stage disease (<i>p</i> = 0.001), a high-intermediate/high-risk International Prognostic Index (IPI) (<i>p</i> &lt; 0.001), and older age (<i>p</i> = 0.060). High-intermediate/high-risk IPI, high proportion of CD3<sup>+</sup>CD4<sup>+</sup> Th cells, and extranodal site ≥2 correlated with unfavorable prognostic factors for survival. High proportion of Th cells was associated with fewer cytotoxic T cells and NK cells at the time of diagnosis. <b><i>Conclusion:</i></b> This study showed an association between circulating lymphocyte subsets including Th cells, Tregs, and NK cells and clinical outcomes in DLBCL; however, further confirmation is needed via prospective trials.
DOI: 10.6084/m9.figshare.13318754.v1
title: Population genomics and TE dynamics in an invasive ant

description: This dataset contains output files generated by analyzing single as well as pool-seq data of <i>Cardiocondyla obscurior</i>. For more details please see the associated paper.
DOI: 10.6084/m9.figshare.13318754.v2
title: Population genomics and TE dynamics in an invasive ant

description: This dataset contains output files generated by analyzing single as well as pool-seq data of <i>Cardiocondyla obscurior</i>. For more details please see the associated paper (soon to be submitted).
DOI: 10.5517/ccdc.csd.cc23tgp3
title: CCDC 1960895: Experimental Crystal Structure Determination

description: Related Article: Benson Joseph, Rini Prakash, Ranjit Bag, Sundargopal Ghosh|2020|Inorg.Chem.|59|16272|doi:10.1021/acs.inorgchem.0c02062
DOI: 10.5517/ccdc.csd.cc24n9lq
title: CCDC 1985723: Experimental Crystal Structure Determination

description: Related Article: Benson Joseph, Rini Prakash, Ranjit Bag, Sundargopal Ghosh|2020|Inorg.Chem.|59|16272|doi:10.1021/acs.inorgchem.0c02062
DOI: 10.34740/kaggle/dsv/1709514
title: US counties COVID 19 dataset