cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/w8jv9ngnsk.5
title: Proteomics explains client specificity of the human TRAP complex in ER protein import

description: In mammalian cells, one-third of all polypeptides are transported into/across the ER-membrane via the Sec61-channel. While the Sec61-complex facilitates translocation of all polypeptides with amino-terminal signal peptides (sp) or transmembrane helices, the Sec61-associated TRAP-complex supports translocation of only a subset, i.e. in a substrate-specific manner. To characterize TRAP-dependent precursors, we combined siRNA-mediated TRAP depletion in human cells, label-free quantitative proteomics, and differential expression analysis. The results were validated by western blotting and quantitative RT-PCR as well as under conditions of over-production of TRAP-dependent precursors and their mutated variants in the presence or absence of MG132, a proteasome inhibitor. Sp analysis of TRAP-clients revealed above-average glycine-plus-proline content as the distinguishing feature. Thus, TRAP acts as an sp-receptor on the ER-membrane’s cytosolic face for precursor polypeptides with high glycine-plus-proline content in their sp and triggers substrate-specific (and regulated) opening of the Sec61-channel by its interaction with the ER-lumenal hinge of Sec61α. The work is about to be published under the title Proteomics reveals signal peptide features determining the client specificity in human TRAP-dependent ER protein import by Duy Nguyen, Regine Stutz, Stefan Schorr, Sven Lang, Stefan Pfeffer, Hudson H. Freeze, Friedrich Förster, Volkhard Helms1 Johanna Dudek & Richard Zimmermann Here we present the original western blot data plus additional SP and TMH analyses, which are presented in a pptx figure and a xlsx table, respectively . Additional physicochemical properties of TRAP clients with SP or TMH. In addition to the hydrophobicity score and glycine/proline (GP) content, we determined the ΔGapp values of SP sequences (a) and transmembrane helices (TMH) (b) with the ΔGapp predictor for TM helix insertion (http://dgpred.cbr.su.se) and plotted these values against the relative count (Density). Glycine and glycine plus proline content of human signal peptides. We used custom scripts to compute the glycine (G) and glycine plus proline (GP) content of human SP sequences from UniProtKB entries. GP content was calculated as the total fraction of glycine and proline in the respective sequence. Notably, 1382 SP of a total of 3513 have a GP content of &gt; 15%, the proposed threshold for TRAP involvement and, therefore, potential regulation by phosphorylation and/or calcium binding by TRAP subunit α.
DOI: 10.5281/zenodo.2387104
title: Underwater database

description: Underwater database
DOI: 10.5281/zenodo.2388509
title: Cost of Taxis in Bamako (2018)

description: This dataset is a list of 60 taxi rides taken by me (Coleman Donaldson) in Bamako during research fieldwork in Bamako in April-May 2018 and November 2018.

Each datapoint is for the negotiated cost of taxi rides that I took throughout Bamako. The estimated distance was calculated by doing a Google Maps search for directions between the start and end destination. In cases in which multiple routes were suggested, I selected the distance that most closely mirrored the route that I recall us taking.

The shareable version of the dataset is "taxis.csv". In this version, I have stripped out identifying information related to exact start and end destination as well as the exact date of the trips.
DOI: 10.5281/zenodo.2388510
title: Cost of Taxis in Bamako (2018)

description: This dataset is a list of 60 taxi rides taken by me (Coleman Donaldson) in Bamako during research fieldwork in Bamako in April-May 2018 and November 2018.

Each datapoint is for the negotiated cost of taxi rides that I took throughout Bamako. The estimated distance was calculated by doing a Google Maps search for directions between the start and end destination. In cases in which multiple routes were suggested, I selected the distance that most closely mirrored the route that I recall us taking.

The shareable version of the dataset is "taxis.csv". In this version, I have stripped out identifying information related to exact start and end destination as well as the exact date of the trips.
DOI: 10.5517/ccdc.csd.cc219bl9
title: CCDC 1885810: Experimental Crystal Structure Determination

description: Related Article: Anthony Linden, Frank Rogano, Hans-Juergen Hansen|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc219bmb
title: CCDC 1885811: Experimental Crystal Structure Determination

description: Related Article: Anthony Linden, Samir El-Rayes, Khaled Abou-Hadeed, Hans-Juergen Hansen|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc219bpd
title: CCDC 1885813: Experimental Crystal Structure Determination

description: Related Article: Anthony Linden, Samir El-Rayes, Khaled Abou-Hadeed, Hans-Juergen Hansen|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc219c4w
title: CCDC 1885827: Experimental Crystal Structure Determination

description: Related Article: Anthony Linden, Christophe Weymuth|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc219ck9
title: CCDC 1885840: Experimental Crystal Structure Determination

description: Related Article: Anthony Linden, Pascal Bisegger, Hans-Juergen Hansen|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/nd89z7sxyf.1
title: Data for: Ship Routing and Scheduling Problem for Steel Plants Cluster alongside the Yangtze River

description: This data includes instances for iron ore shipping from suppliers to the ports at which the steel manufacturers are located. An example file titled "example-instance301" is included as explanation of the data format.
DOI: 10.5281/zenodo.2277817
title: RADICLE_S355_test_data

description: The RADICLE_S355_test_data dataset consists on the raw and treated data related to testing the laser welding process on S355 steel (a high-strength low-alloy structural grade), in a butt-weld configuration.

S355 is a material commonly applied throughout the ‘heavy industry’ sectors, including transport (road, rail and marine), yellow goods (earth-moving and construction machinery), civil engineering and energy sectors. Hence, the H2020 RADICLE project consortium is providing open access to the data collected during the test trials, to allow for further analysis and re-use of this information.
DOI: 10.5281/zenodo.2386815
title: GTEX BioBombe Results - Randomly Permuted Data

description: BioBombe analysis applied to <strong>randomly permuted </strong>gene expression data from The Genotype-Tissue Expression (GTEx) project. Method and results described in https://github.com/greenelab/BioBombe
DOI: 10.5517/ccdc.csd.cc209ty3
title: CCDC 1856495: Experimental Crystal Structure Determination

description: Related Article: Yi Wei,  Song Liu,  Miao-Miao Li,  Yi Li,  Yu Lan,  Liang-Qiu Lu,  Wen-Jing Xiao|2018|J.Am.Chem.Soc.|141|133|doi:10.1021/jacs.8b12095
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20hzfy
title: CCDC 1862400: Experimental Crystal Structure Determination

description: Related Article: Karen de la Vega-Hernández,  Elise Romain,  Anais Coffinet,  Kajetan Bijouard,  Geoffrey Gontard,  Fabrice Chemla,  Franck Ferreira,  Olivier Jackowski,  Alejandro Perez-Luna|2018|J.Am.Chem.Soc.|140|17632|doi:10.1021/jacs.8b09851
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20hzgz
title: CCDC 1862401: Experimental Crystal Structure Determination

description: Related Article: Karen de la Vega-Hernández,  Elise Romain,  Anais Coffinet,  Kajetan Bijouard,  Geoffrey Gontard,  Fabrice Chemla,  Franck Ferreira,  Olivier Jackowski,  Alejandro Perez-Luna|2018|J.Am.Chem.Soc.|140|17632|doi:10.1021/jacs.8b09851
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20hzh0
title: CCDC 1862402: Experimental Crystal Structure Determination

description: Related Article: Karen de la Vega-Hernández,  Elise Romain,  Anais Coffinet,  Kajetan Bijouard,  Geoffrey Gontard,  Fabrice Chemla,  Franck Ferreira,  Olivier Jackowski,  Alejandro Perez-Luna|2018|J.Am.Chem.Soc.|140|17632|doi:10.1021/jacs.8b09851
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20hzj1
title: CCDC 1862403: Experimental Crystal Structure Determination

description: Related Article: Karen de la Vega-Hernández,  Elise Romain,  Anais Coffinet,  Kajetan Bijouard,  Geoffrey Gontard,  Fabrice Chemla,  Franck Ferreira,  Olivier Jackowski,  Alejandro Perez-Luna|2018|J.Am.Chem.Soc.|140|17632|doi:10.1021/jacs.8b09851
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20hzk2
title: CCDC 1862404: Experimental Crystal Structure Determination

description: Related Article: Karen de la Vega-Hernández,  Elise Romain,  Anais Coffinet,  Kajetan Bijouard,  Geoffrey Gontard,  Fabrice Chemla,  Franck Ferreira,  Olivier Jackowski,  Alejandro Perez-Luna|2018|J.Am.Chem.Soc.|140|17632|doi:10.1021/jacs.8b09851
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20hzl3
title: CCDC 1862405: Experimental Crystal Structure Determination

description: Related Article: Karen de la Vega-Hernández,  Elise Romain,  Anais Coffinet,  Kajetan Bijouard,  Geoffrey Gontard,  Fabrice Chemla,  Franck Ferreira,  Olivier Jackowski,  Alejandro Perez-Luna|2018|J.Am.Chem.Soc.|140|17632|doi:10.1021/jacs.8b09851
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20hzm4
title: CCDC 1862406: Experimental Crystal Structure Determination

description: Related Article: Karen de la Vega-Hernández,  Elise Romain,  Anais Coffinet,  Kajetan Bijouard,  Geoffrey Gontard,  Fabrice Chemla,  Franck Ferreira,  Olivier Jackowski,  Alejandro Perez-Luna|2018|J.Am.Chem.Soc.|140|17632|doi:10.1021/jacs.8b09851
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20hzn5
title: CCDC 1862407: Experimental Crystal Structure Determination

description: Related Article: Karen de la Vega-Hernández,  Elise Romain,  Anais Coffinet,  Kajetan Bijouard,  Geoffrey Gontard,  Fabrice Chemla,  Franck Ferreira,  Olivier Jackowski,  Alejandro Perez-Luna|2018|J.Am.Chem.Soc.|140|17632|doi:10.1021/jacs.8b09851
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20s6rs
title: CCDC 1870315: Experimental Crystal Structure Determination

description: Related Article: Joseph Derosa,  Roman Kleinmans,  Van T. Tran,  Malkanthi K. Karunananda,  Steven R. Wisniewski,  Martin D. Eastgate,  Keary M. Engle|2018|J.Am.Chem.Soc.|140|17878|doi:10.1021/jacs.8b11942
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20s6st
title: CCDC 1870316: Experimental Crystal Structure Determination

description: Related Article: Joseph Derosa,  Roman Kleinmans,  Van T. Tran,  Malkanthi K. Karunananda,  Steven R. Wisniewski,  Martin D. Eastgate,  Keary M. Engle|2018|J.Am.Chem.Soc.|140|17878|doi:10.1021/jacs.8b11942
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20s6tv
title: CCDC 1870317: Experimental Crystal Structure Determination

description: Related Article: Joseph Derosa,  Roman Kleinmans,  Van T. Tran,  Malkanthi K. Karunananda,  Steven R. Wisniewski,  Martin D. Eastgate,  Keary M. Engle|2018|J.Am.Chem.Soc.|140|17878|doi:10.1021/jacs.8b11942
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20t2nl
title: CCDC 1871149: Experimental Crystal Structure Determination

description: Related Article: Yuta Okamoto,  Masaru Tanioka,  Atsuya Muranaka,  Kazunori Miyamoto,  Tetsuya Aoyama,  Xingmei Ouyang,  Shinichiro Kamino,  Daisuke Sawada,  Masanobu Uchiyama|2018|J.Am.Chem.Soc.|140|17857|doi:10.1021/jacs.8b11092
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20tjt6
title: CCDC 1871588: Experimental Crystal Structure Determination

description: Related Article: Yuta Okamoto,  Masaru Tanioka,  Atsuya Muranaka,  Kazunori Miyamoto,  Tetsuya Aoyama,  Xingmei Ouyang,  Shinichiro Kamino,  Daisuke Sawada,  Masanobu Uchiyama|2018|J.Am.Chem.Soc.|140|17857|doi:10.1021/jacs.8b11092
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20vgq2
title: CCDC 1872484: Experimental Crystal Structure Determination

description: Related Article: Ya-Jun Hou,  Kai Wu,  Zhang-Wen Wei,  Kang Li,  Yu-Lin Lu,  Cheng-Yi Zhu,  Jing-Si Wang,  Mei Pan,  Ji-Jun Jiang,  Guang-Qin Li,  Cheng-Yong Su|2018|J.Am.Chem.Soc.|140|18183|doi:10.1021/jacs.8b11152
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20vgs4
title: CCDC 1872486: Experimental Crystal Structure Determination

description: Related Article: Ya-Jun Hou,  Kai Wu,  Zhang-Wen Wei,  Kang Li,  Yu-Lin Lu,  Cheng-Yi Zhu,  Jing-Si Wang,  Mei Pan,  Ji-Jun Jiang,  Guang-Qin Li,  Cheng-Yong Su|2018|J.Am.Chem.Soc.|140|18183|doi:10.1021/jacs.8b11152
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20x234
title: CCDC 1874015: Experimental Crystal Structure Determination

description: Related Article: iliang Zhang,  George F. S. Whitehead,  Troy D. Manning,  David Stewart,  Craig I. Hiley,  Michael J. Pitcher,  Susanna Jansat,  Kosmas Prassides,  Matthew J. Rosseinsky|2018|J.Am.Chem.Soc.|140|18162|doi:10.1021/jacs.8b11231
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20x245
title: CCDC 1874016: Experimental Crystal Structure Determination

description: Related Article: iliang Zhang,  George F. S. Whitehead,  Troy D. Manning,  David Stewart,  Craig I. Hiley,  Michael J. Pitcher,  Susanna Jansat,  Kosmas Prassides,  Matthew J. Rosseinsky|2018|J.Am.Chem.Soc.|140|18162|doi:10.1021/jacs.8b11231
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc219d4x
title: CCDC 1885858: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Effendy, Allan H. White|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc219d81
title: CCDC 1885862: Experimental Crystal Structure Determination

description: Related Article: Anthony Linden, Markus Furegati, Andreas J. Rippert|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc219dc4
title: CCDC 1885865: Experimental Crystal Structure Determination

description: Related Article: Anthony Linden, Zoltan Molnar, Hans-Juergen Hansen|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc219dkb
title: CCDC 1885871: Experimental Crystal Structure Determination

description: Related Article: Anthony Linden, Monica Kalbermatter-Schneider, Andreas J. Rippert|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.14469/hpc/4907
title: 12kf

description: Crystallographic data for triazole 12kf
DOI: 10.25720/p1ma-genq
title: IMAGEN study dataset
DOI: 10.5281/zenodo.2390524
title: Model and the related code for gravity field determination from the third invariant of the GOCE gravity gradient tensors: I3GG V1.0th

description: The model and the related code for gravity field determination from the third invariant of the GOCE gravity gradient tensors: I3GG V1.0th