cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25919/655t-c091
title: Climate-based ensemble predictions and uncertainty metrics (TAI, TSD) for plant species in Victoria, southeast Australia (38) and the Himalayan Kingdom of Bhutan (12)

description: This collection includes each of the climate variables (across multiple source datasets), associated plant species distributions in Victoria (n=38) and Bhutan (n=12), and ensemble metrics generated as part of the manuscript titled 'Building robust predictions of plant species distributions using alternative climate datasets and an ensemble modelling approach supported by complementary measures of uncertainty' (Stewart et al. under review). Ensembles are calculated using modelled predictions of species distributions that have been fitted using alternative source climate datasets (n = 10). Each contributing surface represents an ensemble of 7 algorithms (artificial neural networks, boosted regression trees, random forests, generalised additive models, multivariate adaptive regression splines, classification tree analysis, and flexible discriminant analysis). The ensemble metrics presented include the Threshold Agreement Index (TAI; describes the degree to which model predictions agree with respect to an optimal classification threshold) and the Threshold-scaled Standard Deviation (TSD; the standard deviation across all predictions in the ensemble, penalised in regions where contributing models agree with respect to an optimal classification threshold). These metrics describe the congruence and uncertainty associated with the selection of alternative climate datasets; however, could be applied to other applications (e.g. niche overlap under climate change, alternative algorthms, etc.). These metrics are each calculated, per-pixel, using 10 contributing prediction surfaces.
DOI: 10.14457/cu.the.1998.188
title: Assessing the willingness of rural population to join a community financing scheme in Prasat, Krava and Treal of Baray-Santauk operational district, Cambodia
DOI: 10.6084/m9.figshare.16676656.v1
title: Data

description: The modelled concentrations with different vegetation flux inputs and background concentrations , cumulated sensitivities, as well as the regions definition (python script) are shared
DOI: 10.6084/m9.figshare.16683835
title: circ_101277.zip

description: circ_101277 data
DOI: 10.6084/m9.figshare.16683835.v2
title: circ_101277.zip

description: circ_101277 data
DOI: 10.6084/m9.figshare.16683835.v1
title: circ_101227.zip

description: circ_101227 data
DOI: 10.6084/m9.figshare.16684699
title: circ_101277

description: circ_101277
DOI: 10.6084/m9.figshare.16684699.v1
title: circ_101277

description: circ_101277
DOI: 10.6084/m9.figshare.16684729
title: circ_101277

description: circRNA
DOI: 10.6084/m9.figshare.16684729.v1
title: circ_101277

description: circRNA
DOI: 10.5281/zenodo.5527910
title: Metabolic disparity between Cord serum and amniotic fluid revealed by 1H NMR based metabolomics approach

description: During pregnancy, a developing fetus (within amniotic sac and connected to the placenta through umbilical cord) is surrounded by a viscous yellowish amniotic fluid. After delivery, umbilical cord blood is collected as it contains stem cells which can be used as intervention of major hematopoietic or genetic disorders. The amniotic fluid is also used to diagnose the genetic disorders in developing fetus which may also have impact on the metabolic profiles of amniotic fluid. The present study has been designed to identify and quantify the concentration profiles of metabolites present in the cord blood and amniotic fluid. For this, 21 samples of cord blood serum and amniotic fluid were collected in pair and metabolic profiles were measured using 1D 1H CPMG NMR spectroscopy and compared using multivariate statistical analysis tools. The analytical variations have been minimized using formate as an internal reference and its concentration was set to 0.01 mM (nearly close to the detection limit of the 800 MHz NMR spectrometer).
description: {"references": ["Tea, I., Le Gall, G., K\u00fcster, A., Guignard, N., Alexandre\u2013Gouabau, M.C., Darmaun, D. and Robins, R.J., 2012. 1H-NMR-based metabolic profiling of maternal and umbilical cord blood indicates altered materno-foetal nutrient exchange in preterm infants. PloS one, 7(1), p.e29947.", "Sanz-Cort\u00e9s, M., Carbajo, R.J., Crispi, F., Figueras, F., Pineda-Lucena, A. and Gratac\u00f3s, E., 2013. Metabolomic profile of umbilical cord blood plasma from early and late intrauterine growth restricted (IUGR) neonates with and without signs of brain vasodilation. PloS one, 8(12), p.e80121", "Orczyk-Pawilowicz, M., Jawien, E., Deja, S., Hirnle, L., Zabek, A. and Mlynarz, P., 2016. Metabolomics of human amniotic fluid and maternal plasma during normal pregnancy. PloS one, 11(4), p.e0152740."]}
DOI: 10.5281/zenodo.5527909
title: Metabolic disparity between Cord serum and amniotic fluid revealed by 1H NMR based metabolomics approach

description: During pregnancy, a developing fetus (within amniotic sac and connected to the placenta through umbilical cord) is surrounded by a viscous yellowish amniotic fluid. After delivery, umbilical cord blood is collected as it contains stem cells which can be used as intervention of major hematopoietic or genetic disorders. The amniotic fluid is also used to diagnose the genetic disorders in developing fetus which may also have impact on the metabolic profiles of amniotic fluid. The present study has been designed to identify and quantify the concentration profiles of metabolites present in the cord blood and amniotic fluid. For this, 21 samples of cord blood serum and amniotic fluid were collected in pair and metabolic profiles were measured using 1D 1H CPMG NMR spectroscopy and compared using multivariate statistical analysis tools. The analytical variations have been minimized using formate as an internal reference and its concentration was set to 0.01 mM (nearly close to the detection limit of the 800 MHz NMR spectrometer).
description: {"references": ["Tea, I., Le Gall, G., K\u00fcster, A., Guignard, N., Alexandre\u2013Gouabau, M.C., Darmaun, D. and Robins, R.J., 2012. 1H-NMR-based metabolic profiling of maternal and umbilical cord blood indicates altered materno-foetal nutrient exchange in preterm infants. PloS one, 7(1), p.e29947.", "Sanz-Cort\u00e9s, M., Carbajo, R.J., Crispi, F., Figueras, F., Pineda-Lucena, A. and Gratac\u00f3s, E., 2013. Metabolomic profile of umbilical cord blood plasma from early and late intrauterine growth restricted (IUGR) neonates with and without signs of brain vasodilation. PloS one, 8(12), p.e80121", "Orczyk-Pawilowicz, M., Jawien, E., Deja, S., Hirnle, L., Zabek, A. and Mlynarz, P., 2016. Metabolomics of human amniotic fluid and maternal plasma during normal pregnancy. PloS one, 11(4), p.e0152740."]}
DOI: 10.14457/cu.the.1998.189
title: Low temperature CO oxidation by supported gold and silver catalysts
DOI: 10.14457/cu.the.1998.190
title: Improvement of service quality through action research of an off-hour clinic at Chulalongkorn Hospital
DOI: 10.14457/cu.the.1998.191
title: Developing information, education and communication strategies for the promotion of the use of insecticide treated bed nets for malaria prevention in Laos
DOI: 10.15151/esrf-es-514137033
title: Austrian Crystallographic Diffraction Consortium

description: This proposed Austrian Crystallographic Diffraction Consortium (ACDC) BAG is to support various macromolecular structural biology groups across Austria (totally 15 research groups at 8 institutions in 5 cities). We employ mainly the technique of X-ray crystallography to characterize macromolecular biological complexes. Approval of this BAG will be absolutely essential for researchers in all these groups to carry out their structural studies on various health-related subjects, which are targeted at characterizing large molecular assemblies or proteins currently under-represented in the PDB, including membrane proteins. Corresponding high-resolution diffraction data are only obtainable through the use of synchrotron radiation sources. Thus regular synchrotron access is highly desirable to maintain a competitive advantage in our individual research fields.
DOI: 10.15151/esrf-es-515918997
title: A piece of the puzzle to understand the structure-function relationship of antimicrobial peptides

description: The aim of this project is to study the structure of intrinsically disordered antimicrobial peptides under solution conditions and their interactions with surfaces. As model peptides, Melittin and LL37, will be used. The results obtained in this project will be used to develop atomistic and coarse-grained models to be solved with molecular dynamics and Monte Carlo simulations. The goal is to achieve an understanding of the underlying physics on the molecular level, and to decipher the structure-function relationship with respect to sequence determinants. The measurements we aim to perform here are a part of the post doc project by Jenny Andersson and the PhD-project by Mona Koder Hamid, whose projects are a part of a larger project in Skepö research group: Intrinsically disordered proteins: From bulk solution to interaction with surfaces.
DOI: 10.15151/esrf-es-542498870
title: Fibers of collagens, secret and unknown of the eardrum: role in the reception of sounds in frogs

description: The ear is a complex biomechanical system dedicated to sound perception, even though part of the auditory function is located in the central nervous system. The evolution of a tympanic ear has been a key innovation in solving the impedance problem between air and biological tissues allowing sound to reach the inner ear. The coupling between the two middle ear cavities has an effect on the directionality of the eardrum, which acts as a pressure difference sensor. We aim at identifying and quantifying in detail the tympanum structures related to sound perception. We will use nanotomography as a basis for the construction of a highresolution three-dimensional dataset. Such 3D models and comparisons between data obtained for 20 samples of species varying in their frequency response should enable the understanding of the biomechanical basis of hearing very high frequency sounds.
DOI: 10.15151/esrf-es-514137609
title: Revealing the local atomic arrangement in three famous minerals showing modulated structures

description: In this experiment we would like to explore the link between the local/medium atomic arrangement and the average structure in crystals showing modulations. In particular, the aim is to test the Pair Distribution Function (PDF) technique in the investigation of these complex structures. Three minerals were chosen taking into account their well-known modulated structures: quartz, natrite (sodium carbonate) and calaverite (AuTe2) will be measured using X-ray powder diffraction, collecting total scattering data.
DOI: 10.15151/esrf-es-514139105
title: Time resolved SAXS for controlled mineralization protocols of calcium phosphate and calcium carbonate in presence of fetuin-A

description: Biomineralisation is a process by which all living organisms produce mineralized tissues tailored to perform specific functions. Biomineralisation follows a complex and a multistep nucleation pathway understanding of which necessitates understanding the earliest nucleation events and subsequent growth from various possible precursor phases (amorphous or crystalline) to the final mineral phases. Although studied in detail for several decades, the understanding of nucleation and the subsequent growth process is weak, which we attribute to the fact that visualization of this process remains difficult. The experiment proposed here focusses on the time-resolved SAXS measurement to study mineralization of calcium phosphate and calcium carbonate using mineralization protocols well optimized by the involved team. It is expected that the experiment will provide insights into the earliest stages of nucleation of the identified systems with / without the presence of glycoprotein Fetuin-A .
DOI: 10.15151/esrf-es-514138926
title: Quasi in situ 3D Investigation of Glide Prism Formation in GaAs Wafers by Means of X-ray Diffraction Laminography

description: III-V semiconductors like gallium arsenide (GaAs) are important materials for opto- and microelectronics, nano-technology, as well as sensors for X-ray detectors. For these applications, any crystalline imperfection has a potential impact on device yield and performance. As shown by nm-scale TEM studies, so-called glide prisms play a crucial role during plastic deformation of such compound materials. Taking advantage of recent progress in both X-ray diffraction imaging methodology and suitable quasi in situ sample environments, in this proposal we aim at the 3D characterization of glide prisms in GaAs wafers, for the first time following their formation and subsequent evolution on the length scales between μm and mm, and under thermo-mechanical loads as typical of microelectronic device production and processing.
DOI: 10.15151/esrf-es-527842804
title: Bridging the gap between cellular and whole body imaging using Hierarchical Phase-Contrast Tomography: HiP-CT

description: Humans and other large organisms are three-dimensional multiscale biological systems where large scale function and structure are dependent on the macrostructure’s interconnectivity down to the cellular and subcellular level. Using the exceptional coherence provided by the ESRF-EBS, we have demonstrated that propagation-based phase-contrast can effectively decouple resolution from specimen size in soft tissue, obtaining 1.4 micron voxel resolution in 150 mm diameter human organs. Through this Long Term Proposal (LTP) we will develop the techniques required to image whole human and animal bodies ex vivo at 25 micron resolution, zooming to sub-micron voxels (0.7micron) locally, resolving sub-cellular structures through hard- and soft-tissue. Resolving how the micro (sub-cellular) interacts with the macro (whole organism) across length scales will provide all new insights into biological and biomedical function. This is true for both healthy and pathological system level behaviour.
DOI: 10.15151/esrf-es-514139284
title: Orientation, composition and crystallographic properties of bone mineral around osteocyte lacunae and canaliculi

description: Bone consists primarily of mineralized collagen fibrils arranged in specific patterns. It is traversed by a network of cells housed in lacunae interconnected by few-hundred-nanometer wide canaliculi. The organic matrix around the osteocyte network differs from that further away, but limited knowledge is available about the mineral phase. We hypothesize that it differs in orientation and possibly in other crystallographic properties. This is based on preliminary data that, however, did not have sufficient resolution to fully test the hypothesis due to insufficient flux. With the EBS, we aim to test the hypothesis by scanning XRD/XRF on thin slices of bone since the EBS is expected to have sufficient flux to allow this challenging experiment. The osteocyte network is vast and proving how its associated mineral is organized will have importance for bone mechanics and diseases in bone turnover.
DOI: 10.5281/zenodo.5529490
title: Stronger net selection on males across animals

description: Sexual selection is considered the major driver for the evolution of sex differences. However, the eco-evolutionary dynamics of sexual selection and their role for a population’s adaptive potential to respond to environmental change have only recently been explored. Theory predicts that sexual selection promotes adaptation at a low demographic cost only if net selection is stronger on males compared to females. We used a comparative approach to show that net selection is indeed stronger in males and provide preliminary support that this sex-bias is associated with sexual selection. Given that both sexes share the vast majority of their genes, our findings corroborate the notion that the genome is often confronted with a more stressful environment when expressed in males. Collectively, our study supports one of the long-standing key assumptions required for sexual selection to bolster adaptation, and sexual selection may therefore enable some species to track environmental change more efficiently.
DOI: 10.5281/zenodo.5529489
title: Stronger net selection on males across animals

description: Sexual selection is considered the major driver for the evolution of sex differences. However, the eco-evolutionary dynamics of sexual selection and their role for a population’s adaptive potential to respond to environmental change have only recently been explored. Theory predicts that sexual selection promotes adaptation at a low demographic cost only if net selection is stronger on males compared to females. We used a comparative approach to show that net selection is indeed stronger in males and provide preliminary support that this sex-bias is associated with sexual selection. Given that both sexes share the vast majority of their genes, our findings corroborate the notion that the genome is often confronted with a more stressful environment when expressed in males. Collectively, our study supports one of the long-standing key assumptions required for sexual selection to bolster adaptation, and sexual selection may therefore enable some species to track environmental change more efficiently.
DOI: 10.6084/m9.figshare.16684786
title: Data Gamified Quizzes.docx

description: This dataset consists of student responses to a survey regarding gamified quizzes.
DOI: 10.6084/m9.figshare.16684786.v1
title: Data Gamified Quizzes.docx

description: This dataset consists of student responses to a survey regarding gamified quizzes.
DOI: 10.6084/m9.figshare.14707578
title: Hypoplastic uterus reports

description: scan reports
DOI: 10.6084/m9.figshare.14707578.v2
title: Hypoplastic uterus reports

description: scan reports
DOI: 10.6084/m9.figshare.14707578.v1
title: Hypoplastic uterus reports, Case 2

description: case 2 scan reports
DOI: 10.34740/kaggle/dsv/2654303
title: Contrastive Language Image Pretraining by openai
DOI: 10.6084/m9.figshare.16684801
title: Annex supplement

description: To further investigate the phylogenetic position of <i>A. japonica</i>, complete chloroplast genome sequences of this taxon and 14 other species selected from the Primulaceae and one outgroup were used to construct phylogenetic tree. <i>Camellia granthamiana</i> was selected as the outgroup of the phylogenetic tree. This study also used 85 protein-coding genes to conduct a ML analysis under the GTR + R + I model with 1000 bootstrap replicates. The phylogenetic tree showed that <i>A. japonica </i>was clustered with other species in Primulaceae with strong support (Figure 1). The complete plastome sequence of <i>A. japonica</i> will provide a useful resource for the conservation genetics of this species as well as for the phylogenetic studies for Primulaceae.
DOI: 10.6084/m9.figshare.16684801.v1
title: Annex supplement

description: To further investigate the phylogenetic position of <i>A. japonica</i>, complete chloroplast genome sequences of this taxon and 14 other species selected from the Primulaceae and one outgroup were used to construct phylogenetic tree. <i>Camellia granthamiana</i> was selected as the outgroup of the phylogenetic tree. This study also used 85 protein-coding genes to conduct a ML analysis under the GTR + R + I model with 1000 bootstrap replicates. The phylogenetic tree showed that <i>A. japonica </i>was clustered with other species in Primulaceae with strong support (Figure 1). The complete plastome sequence of <i>A. japonica</i> will provide a useful resource for the conservation genetics of this species as well as for the phylogenetic studies for Primulaceae.
DOI: 10.5517/ccdc.csd.cc26qx51
title: CCDC 2047803: Experimental Crystal Structure Determination

description: Related Article: Jin-Fa Chen, Xiaodong Yin, Kai Zhang, Zhenhui Zhao, Songhe Zhang, Niu Zhang, Nan Wang, Pangkuan Chen|2021|J.Org.Chem.|86|12654|doi:10.1021/acs.joc.1c01175
DOI: 10.5517/ccdc.csd.cc272w18
title: CCDC 2058339: Experimental Crystal Structure Determination

description: Related Article: Chandrakanta Parida|2021|CSD Communication|||
description: Related Article: Chandrakanta Parida, Buddhadeb Mondal, Animesh Ghosh, Subhas Chandra Pan|2021|J.Org.Chem.|86|13082|doi:10.1021/acs.joc.1c00644
DOI: 10.5517/ccdc.csd.cc288jsw
title: CCDC 2093578: Experimental Crystal Structure Determination

description: Related Article: Rohan Volpe, Hanson Y.-L. Law, Jonathan M. White, Bernard L. Flynn|2021|Org.Lett.|23|7055|doi:10.1021/acs.orglett.1c02430
DOI: 10.5517/ccdc.csd.cc28g98b
title: CCDC 2099111: Experimental Crystal Structure Determination

description: Related Article: Chenglong Li, Yafei Shi, Pengfei Li, Niu Zhang, Nan Wang, Xiaodong Yin, Pangkuan Chen|2021|Org.Lett.|23|7123|doi:10.1021/acs.orglett.1c02528
DOI: 10.5517/ccdc.csd.cc28g99c
title: CCDC 2099112: Experimental Crystal Structure Determination

description: Related Article: Chenglong Li, Yafei Shi, Pengfei Li, Niu Zhang, Nan Wang, Xiaodong Yin, Pangkuan Chen|2021|Org.Lett.|23|7123|doi:10.1021/acs.orglett.1c02528
DOI: 10.14457/cu.the.1999.164
title: Foaming of anionic surfactant system with soap
DOI: 10.14457/cu.the.1998.192
title: Effect of carbon dioxide on methane conversion under electric discharge
DOI: 10.25919/bad4-wc30
title: Swainsona sericea (Fabaceae)

description: Genetic and growth data
DOI: 10.5281/zenodo.5464854
title: Replication package for: Entrepreneurial Human Capital and Firm Dynamics

description: This replication package contains publicly available data and code to replicate the figures and tables in: Queiró, Francisco. 2021. Entrepreneurial Human Capital and Firm Dynamics.
DOI: 10.5281/zenodo.5159270
title: Replication package for: Entrepreneurial Human Capital and Firm Dynamics

description: This replication package contains publicly available data and code to replicate the figures and tables in: Queiró, Francisco. 2021. Entrepreneurial Human Capital and Firm Dynamics.
DOI: 10.5281/zenodo.5529406
title: Lateralization of CA1 assemblies in the absence of CA3 input

description: Raw data (sorted spikes, local field potentials, behavior) for the paper "Lateralization of CA1 assemblies in the absence of CA3 input" Guan et al., <em>Nat Commun</em>, (2021). Each zip file contain data recorded from single mouse. Mice HX384, HX385, HX388, HX443 constitute the 'control' group. Mice HX1582, HX1584, HX386, HX387, HX400 constitute the 'mutants' (CA3-TeTX) group.
DOI: 10.5281/zenodo.5529405
title: Lateralization of CA1 assemblies in the absence of CA3 input

description: Raw data (sorted spikes, local field potentials, behavior) for the paper "Lateralization of CA1 assemblies in the absence of CA3 input" Guan et al., <em>Nat Commun</em>, (2021). Each zip file contain data recorded from single mouse. Mice HX384, HX385, HX388, HX443 constitute the 'control' group. Mice HX1582, HX1584, HX386, HX387, HX400 constitute the 'mutants' (CA3-TeTX) group.
DOI: 10.5281/zenodo.5416547
title: NLL-SSST-coherence earthquake relocation catalogs for the Parkfield and Lone Pine, California earthquake sequence.

description: CSV tables of the final, NLL-SSST-coherence earthquake relocation catalogs for the Parkfield and Lone Pine, California earthquake sequence. These datasets are from relocations presented in the article<br> High-precision, earthquake location using source-specific station terms and inter-event waveform similarity<br> submitted to Journal of Geophysical Research Solid Earth
description: This version updated with new catalogs produced with minor changes to the software and processing procedures.