cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14100721
title: Additional file 7 of The bacterial communities of Alaskan mosses and their contributions to N2-fixation

description: Additional file 6: Table S10: Table summarizing the findings from nine studies about prevalence and strength of host phylogenetic structuring of plant-microbial communities.
DOI: 10.6084/m9.figshare.14100715
title: Additional file 6 of The bacterial communities of Alaskan mosses and their contributions to N2-fixation

description: Additional file 5: Table S9: Table summarizing the correlations between N2-fixation rate and the 22 putative N2-fixing phylotypes. We note that some phylotypes are listed more than once as they had significant positive correlations in multiple host species.
DOI: 10.6084/m9.figshare.14100721.v1
title: Additional file 7 of The bacterial communities of Alaskan mosses and their contributions to N2-fixation

description: Additional file 6: Table S10: Table summarizing the findings from nine studies about prevalence and strength of host phylogenetic structuring of plant-microbial communities.
DOI: 10.6084/m9.figshare.14100742
title: Additional file 4 of Oxytocin-induced increase in N,N-dimethylglycine and time course of changes in oxytocin efficacy for autism social core symptoms

description: Additional file 4. Supporting Table 4. The relationship of the increased N,N-Dimethylglycine to clinical and behavioral effects of oxytocin.
DOI: 10.6084/m9.figshare.14100742.v1
title: Additional file 4 of Oxytocin-induced increase in N,N-dimethylglycine and time course of changes in oxytocin efficacy for autism social core symptoms

description: Additional file 4. Supporting Table 4. The relationship of the increased N,N-Dimethylglycine to clinical and behavioral effects of oxytocin.
DOI: 10.6084/m9.figshare.14100745
title: Additional file 5 of Oxytocin-induced increase in N,N-dimethylglycine and time course of changes in oxytocin efficacy for autism social core symptoms

description: Additional file 5. Supplementary Figure 1. The number of successful measurements using a capillary electrophoresis system with an Agilent 6210 time-of-flight mass spectrometer (CE-TOFMS).
DOI: 10.6084/m9.figshare.14100745.v1
title: Additional file 5 of Oxytocin-induced increase in N,N-dimethylglycine and time course of changes in oxytocin efficacy for autism social core symptoms

description: Additional file 5. Supplementary Figure 1. The number of successful measurements using a capillary electrophoresis system with an Agilent 6210 time-of-flight mass spectrometer (CE-TOFMS).
DOI: 10.6084/m9.figshare.14100739
title: Additional file 3 of Oxytocin-induced increase in N,N-dimethylglycine and time course of changes in oxytocin efficacy for autism social core symptoms

description: Additional file 3. Supporting Table 3. Difference in changes of metabolites level between time-course change- and placebo-administered groups with covariating age.
DOI: 10.6084/m9.figshare.14100739.v1
title: Additional file 3 of Oxytocin-induced increase in N,N-dimethylglycine and time course of changes in oxytocin efficacy for autism social core symptoms

description: Additional file 3. Supporting Table 3. Difference in changes of metabolites level between time-course change- and placebo-administered groups with covariating age.
DOI: 10.6084/m9.figshare.14100748
title: Additional file 6 of Oxytocin-induced increase in N,N-dimethylglycine and time course of changes in oxytocin efficacy for autism social core symptoms

description: Additional file 6. Standard operation paper for blood collection and processing in Japanese Independent Trial of Oxytocin.
DOI: 10.6084/m9.figshare.14100748.v1
title: Additional file 6 of Oxytocin-induced increase in N,N-dimethylglycine and time course of changes in oxytocin efficacy for autism social core symptoms

description: Additional file 6. Standard operation paper for blood collection and processing in Japanese Independent Trial of Oxytocin.
DOI: 10.6084/m9.figshare.14100772.v1
title: Additional file 1 of Association between gastric content fluidity and pars oesophageal ulcers in nursery pigs: a cross-sectional study of high-risk Danish herds using commercial feed

description: Additional file 1. Statistical GAM model (r file).
DOI: 10.6084/m9.figshare.14100775
title: Additional file 2 of Association between gastric content fluidity and pars oesophageal ulcers in nursery pigs: a cross-sectional study of high-risk Danish herds using commercial feed

description: Additional file 2. Raw data for the statistical GAM model.
DOI: 10.6084/m9.figshare.14100775.v1
title: Additional file 2 of Association between gastric content fluidity and pars oesophageal ulcers in nursery pigs: a cross-sectional study of high-risk Danish herds using commercial feed

description: Additional file 2. Raw data for the statistical GAM model.
DOI: 10.6084/m9.figshare.14100772
title: Additional file 1 of Association between gastric content fluidity and pars oesophageal ulcers in nursery pigs: a cross-sectional study of high-risk Danish herds using commercial feed

description: Additional file 1. Statistical GAM model (r file).
DOI: 10.5281/zenodo.4001577
title: Data for "Measurement report: Effects of NOx and seed aerosol on highly oxygenated organic molecules (HOM) from cyclohexene ozonolysis"

description: Includes the peak list of fitted compounds with their average "FitFactors", the normalised signal time series of the compounds from the CI-APi-ToF, the time series of condensation sink (CS), gas concentrations (O3 & NOx), temperature and relative humidity; and data for reproducing the main figures.
DOI: 10.6084/m9.figshare.14100964.v1
title: Data table from Sex differences in condition dependence of natal dispersal in a large herbivore: dispersal propensity and distance are decoupled

description: Data table used for the analysis of dispersal propensity (0 or 1) and dispersal distance in relation to sex and body mass
DOI: 10.6084/m9.figshare.14100964
title: Data table from Sex differences in condition dependence of natal dispersal in a large herbivore: dispersal propensity and distance are decoupled

description: Data table used for the analysis of dispersal propensity (0 or 1) and dispersal distance in relation to sex and body mass
DOI: 10.6084/m9.figshare.14100967
title: Data table codes from Sex differences in condition dependence of natal dispersal in a large herbivore: dispersal propensity and distance are decoupled

description: Codes for the data table used for the analysis of dispersal propensity (0 or 1) and dispersal distance in relation to sex and body mass
DOI: 10.6084/m9.figshare.14100967.v1
title: Data table codes from Sex differences in condition dependence of natal dispersal in a large herbivore: dispersal propensity and distance are decoupled

description: Codes for the data table used for the analysis of dispersal propensity (0 or 1) and dispersal distance in relation to sex and body mass
DOI: 10.6084/m9.figshare.14100256.v1
title: Additional file 12 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 12: Table S9. The primer sequences for qRT-PCR.
DOI: 10.6084/m9.figshare.14100253.v1
title: Additional file 11 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 11: Table S8. The number of identified TFs and differentially expressed TFs.
DOI: 10.6084/m9.figshare.14100250.v1
title: Additional file 10 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 10: Table S7. The detailed information of the unigenes encoding the enzymes that are involved in the taxol biosynthesis pathway.
DOI: 10.6084/m9.figshare.14100256
title: Additional file 12 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 12: Table S9. The primer sequences for qRT-PCR.
DOI: 10.6084/m9.figshare.14100253
title: Additional file 11 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 11: Table S8. The number of identified TFs and differentially expressed TFs.
DOI: 10.6084/m9.figshare.14100250
title: Additional file 10 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 10: Table S7. The detailed information of the unigenes encoding the enzymes that are involved in the taxol biosynthesis pathway.
DOI: 10.6084/m9.figshare.14100995
title: MRPS data for "Standardized procedure to measure the size distribution of extracellular vesicles and other particles in biofluids with microfluidic resistive pulse sensing"

description: We performed MRPS measurements with human plasma and urine, and conditioned medium of PC3 prostate cancer cell line (PC3 CM). This is the data in XLSX format and can be used to replicate the figures in the linked manuscript.<br><br>
DOI: 10.6084/m9.figshare.14054871
title: Experimental-Data from Leaky barriers: leaky enough for fish to pass?

description: Experimental data set including fish behaviour results and hydrodynamic measurements.
DOI: 10.6084/m9.figshare.14054871.v2
title: Experimental-Data from Leaky barriers: leaky enough for fish to pass?

description: Experimental data set including fish behaviour results and hydrodynamic measurements.
DOI: 10.6084/m9.figshare.14054871.v1
title: Experimental-Data from Leaky barriers: leaky enough for fish to pass?

description: Experimental data set including fish behaviour results and hydrodynamic measurements.
DOI: 10.5517/ccdc.csd.cc21vk4m
title: CCDC 1902350: Experimental Crystal Structure Determination

description: Related Article: Ping Zheng, Alim Abdurahman, Zhaoxia Zhang, Yuting Feng, Yimeng Zhang, Xin Ai, Feng Li, Ming Zhang|2020|J.Hazard.Mater.|409|124500|doi:10.1016/j.jhazmat.2020.124500
DOI: 10.5282/ubm/data.222
title: Lists of pottery found in the New Kingdom town of Sai Island, sectors SAV1 East and SAV1 West

description: These lists contain the full information of all ceramics excavated during the course of the AcrossBorders project in the New Kingdom town of Sai Island (Sudan) in the sectors SAV1 East and SAV1 West arranged according to year of excavation and stratigraphy.
description: Es handelt sich um eine komplette Auflistung aller durch das AcrossBorders Projekt in der Stadt des Neuen Reiches auf Sai (Sudan) in den Sektoren SAV1 Ost und SAV1 West ausgegrabenen Keramikfunde. Die Listen sind nach Grabungsjahr und Stratigraphie sortiert.
DOI: 10.5281/zenodo.4558607
title: josoga2/eccebp-alpha-project: F1000 Code Release

description: Code for analyzing the datasets Dataset Description: Num: Row Number Hybridization REF: CpG Reference ID Position: Position in hg19 Gene: Entrez Gene Symbol Chrome: Chromosome Number p_vals: P value for t-test between patients with CEBPA and without CEBPA mutation mean_cebpa_mut: mean methylation score for patients with CEBPA mutation mean_no_cebpa_mut: mean methylation score for patients with CEBPA mutation site_status: prediction status for CEBPA sites fdr: fdr p_value
DOI: 10.6084/m9.figshare.13489116
title: RNA sequencing results.xls

description: RNA-seq analysis of A549-IR cells treated with or without <i>Lysimachia capillipes</i>capilliposide C.
DOI: 10.6084/m9.figshare.13489116.v2
title: RNA sequencing results.xls

description: RNA-seq analysis of A549-IR cells treated with or without <i>Lysimachia capillipes</i>capilliposide C.
DOI: 10.5281/zenodo.4558617
title: josoga2/eccebp-alpha-project: F1000 Code Release

description: Code for analyzing the datasets Dataset Description: Num: Row Number Hybridization REF: CpG Reference ID Position: Position in hg19 Gene: Entrez Gene Symbol Chrome: Chromosome Number p_vals: P value for t-test between patients with CEBPA and without CEBPA mutation mean_cebpa_mut: mean methylation score for patients with CEBPA mutation mean_no_cebpa_mut: mean methylation score for patients with CEBPA mutation site_status: prediction status for CEBPA sites fdr: fdr p_value This project contains the following extended data: Supplementary Table 1: Summary table of DNA binding domains (DBD), the counts of target regions within the genome and statistical analysis. (DNA_BINDING_DOMAINS_ID.tsv) Sequence: ecCEBPα secondary structure prediction with RNAplfold at a pairing probability cut off of 0.1. N represents all sequences with pairing probability greater than 0.1. (predicted_secondary_structure_of_ecCEBPA.fa)
DOI: 10.5281/zenodo.4385258
title: josoga2/eccebp-alpha-project: F1000 Code Release

description: Code for analyzing the datasets Dataset Description: Num: Row Number Hybridization REF: CpG Reference ID Position: Position in hg19 Gene: Entrez Gene Symbol Chrome: Chromosome Number p_vals: P value for t-test between patients with CEBPA and without CEBPA mutation mean_cebpa_mut: mean methylation score for patients with CEBPA mutation mean_no_cebpa_mut: mean methylation score for patients with CEBPA mutation site_status: prediction status for CEBPA sites fdr: fdr p_value This project contains the following extended data: Supplementary Table 1: Summary table of DNA binding domains (DBD), the counts of target regions within the genome and statistical analysis. (DNA_BINDING_DOMAINS_ID.tsv) Sequence: ecCEBPα secondary structure prediction with RNAplfold at a pairing probability cut off of 0.1. N represents all sequences with pairing probability greater than 0.1. (predicted_secondary_structure_of_ecCEBPA.fa)
DOI: 10.5281/zenodo.4558646
title: Test scripts

description: Experimental outputs in "Automating End-to-End Web Testing via Manual Testing" submitted to ESCE/FSE2021
DOI: 10.5281/zenodo.4558657
title: Test scripts

description: Experimental outputs in "Automating End-to-End Web Testing via Manual Testing" submitted to ESCE/FSE2021
DOI: 10.5517/ccdc.csd.cc254tv0
title: CCDC 2000642: Experimental Crystal Structure Determination

description: Related Article: Kai Liu, Xuefeng Jiang|2021|Org.Lett.|23|1327|doi:10.1021/acs.orglett.0c04310
DOI: 10.5517/ccdc.csd.cc250xx1
title: CCDC 1996893: Experimental Crystal Structure Determination

description: Related Article: Piermaria Pinter, Johannes Soellner, Thomas Strassner|2021|Organometallics|40|557|doi:10.1021/acs.organomet.0c00790
DOI: 10.6084/m9.figshare.14101544
title: Supplementary Material for: The Pharmacokinetics of Caffeine in Preterm Newborns: No Influence of Doxapram but Important Maturation with Age

description: <b><i>Background:</i></b> Apnea of prematurity can persist despite caffeine therapy in preterm infants. Doxapram may additionally support breathing. Although multiple small studies have reported the efficacy of doxapram, the structural co-treatment with caffeine impedes to ascribe the efficacy to doxapram itself or to a pharmacokinetic (PK) interaction where doxapram increases the exposure to caffeine. We examined whether there is a PK drug-drug interaction between doxapram and caffeine by developing a PK model for caffeine including infants with and without doxapram treatment. <b><i>Methods:</i></b> In preterm neonates receiving caffeine, we determined caffeine plasma concentrations before, during, and directly after doxapram co-treatment and used these to develop a population PK model in NONMEM 7.3. Patient characteristics and concomitant doxapram administration were tested as covariates. <b><i>Results:</i></b> 166 plasma samples were collected from 39 preterm neonates receiving caffeine (median gestational age 25.6 [range 24.0–28.0] weeks) of which 65 samples were taken during co-treatment with doxapram (39%, from 32/39 infants). Clearance of caffeine was 9.99 mL/h for a typical preterm neonate with a birth weight of 0.8 kg and 23 days postnatal age and increased with birth weight and postnatal age, resulting in a 4-fold increase in clearance during the first month of life. No PK interaction between caffeine and doxapram was identified. <b><i>Discussion:</i></b> Caffeine clearance is not affected by concomitant doxapram therapy but shows a rapid maturation with postnatal age. As current guidelines do not adjust the caffeine dose with postnatal age, decreased exposure to caffeine might partly explain the need for doxapram therapy after the first week of life.
DOI: 10.25345/c54z3j
title: MassIVE MSV000086942 - 2021 Trauma plasma H14 depleted proteomics
title: Describe the changes in plasma proteomic profile associated with platelet dysfunction after trauma
DOI: 10.5281/zenodo.4384489
title: India Renewable Energy Value Model Data

description: This data set includes the input and output data for the Renewable Energy Value (REV) model applied in the paper: Deshmukh, R., Phadke, A., Callaway, D. (2021) "Least-cost targets and fossil fuel capacity in India's pursuit of renewable energy", Proceedings of the National Academy of Sciences.
description: {"references": ["Deshmukh, R., Phadke, A., Callaway, D. (2021) \"Least-cost targets and avoided fossil fuel capacity in India's pursuit of renewable energy\", Proceedings of the National Academy of Sciences."]}
DOI: 10.5281/zenodo.4558665
title: qualitative data on healthcareworkers during COVID-19

description: Based on Interview protocolls on the experiences made during the first weeks of the COVID-19 response in hospitals in Austria and Italy, we reduced data using qualitative content analysis and created a concept map applying the coding paradigm by strauss and corbin (1996) in grounded theory methodology. For ethical reasons we cannot upload complete interview transcripts and therefore provide paraphrased and conceptualized datasets. For more information please contact alexander.kreh@uibk.ac.at.
DOI: 10.5281/zenodo.4241858
title: qualitative data on healthcareworkers during COVID-19

description: Based on Interview protocolls on the experiences made during the first weeks of the COVID-19 response in hospitals in Austria and Italy, we reduced data using qualitative content analysis and created a concept map applying the coding paradigm by strauss and corbin (1996) in grounded theory methodology. For ethical reasons we cannot upload complete interview transcripts and therefore provide paraphrased and conceptualized datasets. For more information please contact alexander.kreh@uibk.ac.at.
DOI: 10.5281/zenodo.4541234
title: LiDAR-based glacial geomorphological dataset, southern sector of Baltic Ice Stream Complex, last Scandinavian Ice Sheet, Poland

description: This GIS dataset contains results of glacial geomorphological mapping of central west Poland based on a 0.4 m high-resolution Digital Elevation Model derived from airborne Light Detection and Ranging data. The mapped area covers area of 65 000 km<sup>2</sup> located along the southern sector of the last Scandinavian Ice Sheet within the limits of the terrestrially terminating Baltic Ice Stream Complex. The GIS dataset contains 5461 features in GeoPackage format that represent: Mega-Scale Glacial Lineations, drumlins, marginal features (moraine chains, abrupt margins, edges of ice-contact fans), ribbed moraines, tunnel valleys, eskers, geometrical ridge networks and hill-hole pairs. The dataset is accompanied by map presenting the dataset - Glacial geomorphology of the southern sector of the last Scandinavian Ice Sheet, central west Poland, that is produced in in PDF format and designed to be viewed at a scale of 1:500000. These data constitute a valuable source for reconstructing ice dynamics and constraining modelling of the southern sector of the last Scandinavian Ice Sheet, modelling the response of ice to climatic changes, and subglacial landform formation. These data allow comparison between subglacial landforms between localities, including both formerly glaciated and modern glaciated areas occupied by ice streams.
description: This work was supported by the Polish National Science Centre (NCN) under Grant [2015/17/D/ST10/01975]. Chris Clark and Stephen Livingstone were supported by the PalGlac project funded from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (Grant agreement No. 787263)
DOI: 10.6084/m9.figshare.14101622
title: Supplementary Material for: Does Dietary Intake Impact Omentin Gene Expression and Plasma Concentration? A Systematic Review

description: <b><i>Background:</i></b> Omentin is an adipokine with anti-inflammatory and insulin-sensitizing effects that can play a protective role against cardiovascular disease and diabetes. The aim was to systematically review and summarize the existing evidence on the association between overall dietary intake and omentin gene expression and circulation. <b><i>Summary:</i></b> A literature search was conducted in PubMed, Scopus, and Web of Science up to September 2019. Of the 1,940 retrieved articles, 20 relevant studies were included, 6 of which were observational, 11 were clinical trials in humans, and 3 were animal studies. Four randomized controlled trials (RCTs) had a high risk of bias (RoB), 1 had “some concerns”, and 2 had a low RoB. Among the nonrandomized studies with comparators, 4 had a serious RoB and 2 had a moderate RoB. In the experimental animal studies with a moderate RoB, conflicting results for omentin serum concentration were found for high-fat and low-fat diets. A high-fat diet (HFD) was shown to reduce omentin gene expression in one animal study. In the observational studies, omentin serum concentration was reduced by Ramadan fasting and saturated fatty acid (SFA) intake, and an increase in omentin gene expression was observed with monounsaturated fatty acid (MUFA) intake. There was no association of dietary inflammatory index (DII), macronutrient intake, or total calorie intake with omentin plasma concentrations. In the human interventional studies, omentin plasma concentration increased with a long-term low-calorie, low-fat diet (LFD), and no change was seen with a HFD or a short-term low-calorie diet (LCD). <b><i>Key Messages:</i></b> It seems that a long-term diet with a lower fat content and a balanced distribution of fatty acids, i.e., a higher MUFA and lower SFA intake, may effectively increase omentin plasma concentration, possibly via improved insulin resistance and reduced inflammation, but more research is needed to confirm or refute this.