cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2mv6g5
title: Occurrence Download

description: A dataset containing 4249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.98590 4.88917,-73.88411 4.88917,-73.88411 4.92986,-73.98590 4.92986,-73.98590 4.88917))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 4249 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019284-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16929452
title: Deep bulk RNAseq of neurological controls and PD brains

description: This Zenodo deposit contains a publicly available description of the Dataset:

Title: "Deep bulk RNAseq of neurological controls and PD brains".

Description: Human post-mortem brain tissue from donors with Lewy Body pathology and neurologically healthy controls was sourced from the Cambridge Brain Bank under London–Bloomsbury Research Ethics Committee (REC reference no. 16/LO/0508). Donors with Lewy Body pathology (n=25) had a clinical diagnosis of Parkinson's disease and were compared to an age- and sex-matched group of neurologically healthy control donors (n=18) who had no history of neurological illness. A neuropathologist assessed all cases for Lewy Body pathology Braak staging, co-existing proteinopathies and other pathologies. Fresh frozen tissue was sampled from SN,  PUT, AMY, and PFC at the level of Brodmann area 46 (PFC). A 3 mm3 tissue piece was cut from the same tissue block that had been used for snRNA sequencing and disrupted using a Tissuelyser (Qiagen). A steel bead and RLT buffer with -mercaptoethanol was added to the Tissuelyser and shaken at 30 Hz for 2 minutes. Total RNA was isolated from the disrupted tissue using the RNeasy Mini Kit (Qiagen; RRID). The sequencing libraries were then generated using Illumina TruSeq Stranded mRNA library prep kit (with poly-A selection) and sequenced on a NovaSeq6000 or Novaseq X plus (2 x 150 paired end). Basecalling and sample-specific fastq files were done using Illumina's bcl2fastq  in default parameters. Reads were uniquely mapped to hg38 reference genome using STAR aligner (version 2.7.8a; REF; RFID, --outFilterMultimapNmax 1, --outFilterMismatchNoverLmax 0.03).  TE and gene quantification was performed using featureCounts (subread package version 1.6.3; REF; RFID -s 2) and gencode annotation version 38, repeatmasker (open-4.0.5, filtered from tRNAs, simple repeats, small RNAs, and low-complexity regions), or retrotector predictions annotation.





This dataset is made available to researchers via the ASAP CRN Cloud: cloud.parkinsonsroadmap.org. Instructions for how to request access can be found in the User Manual.

This research was funded by the Aligning Science Across Parkinson's Collaborative Research Network (ASAP CRN), through the Michael J. Fox Foundation for Parkinson's Research (MJFF).

This Zenodo deposit was created by the ASAP CRN Cloud staff on behalf of the dataset authors. It provides a citable reference for a CRN Cloud Dataset
DOI: 10.15468/dl.8ts9cb
title: Occurrence Download

description: A dataset containing 500 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lagocephalus suezensis"
 ]
}

 The dataset includes 500 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019286-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ug4np
title: Occurrence Download

description: A dataset containing 14379 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aythya nyroca",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 14379 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019220-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yae6cw
title: Occurrence Download

description: A dataset containing 741 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lantana viburnoides",
 "Geometry POLYGON ((-17.62504 -34.81917, 51.13387 -34.81917, 51.13387 37.34999, -17.62504 37.34999, -17.62504 -34.81917))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 741 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019288-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bcfk9r
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.28_1",
 "TaxonKey is Juncus articulatus"
 ]
}

 The dataset includes 73 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019291-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pg5v53
title: Occurrence Download

description: A dataset containing 940 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Calappa hepatica"
 ]
}

 The dataset includes 940 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019289-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17008798
title: 5min_m_apss_Data

description: This dataset contains simulated hazardous gas dispersion data generated using the GRAMM GRAL. The simulations are based on the Chemical Park model (available in the University of Hamburg Wind Tunnel Laboratory dataset), which provides realistic chemical park building layouts used as the underlying geometry for the dispersion experiments. The dataset is designed for research in quick prediction of hazardous gas dispersion, atmospheric environment modeling, and data-driven methods such as deep learning.
DOI: 10.5281/zenodo.17008799
title: 5min_m_apss_Data

description: This dataset contains simulated hazardous gas dispersion data generated using the GRAMM GRAL. The simulations are based on the Chemical Park model (available in the University of Hamburg Wind Tunnel Laboratory dataset), which provides realistic chemical park building layouts used as the underlying geometry for the dispersion experiments. The dataset is designed for research in quick prediction of hazardous gas dispersion, atmospheric environment modeling, and data-driven methods such as deep learning.
DOI: 10.5281/zenodo.16929449
title: Deep bulk RNAseq of neurological controls and PD brains

description: This Zenodo deposit contains a publicly available description of the Dataset:

Title: "Deep bulk RNAseq of neurological controls and PD brains".

Description: Human post-mortem brain tissue from donors with Lewy Body pathology and neurologically healthy controls was sourced from the Cambridge Brain Bank under London–Bloomsbury Research Ethics Committee (REC reference no. 16/LO/0508). Donors with Lewy Body pathology (n=25) had a clinical diagnosis of Parkinson's disease and were compared to an age- and sex-matched group of neurologically healthy control donors (n=18) who had no history of neurological illness. A neuropathologist assessed all cases for Lewy Body pathology Braak staging, co-existing proteinopathies and other pathologies. Fresh frozen tissue was sampled from SN,  PUT, AMY, and PFC at the level of Brodmann area 46 (PFC). A 3 mm3 tissue piece was cut from the same tissue block that had been used for snRNA sequencing and disrupted using a Tissuelyser (Qiagen). A steel bead and RLT buffer with -mercaptoethanol was added to the Tissuelyser and shaken at 30 Hz for 2 minutes. Total RNA was isolated from the disrupted tissue using the RNeasy Mini Kit (Qiagen; RRID). The sequencing libraries were then generated using Illumina TruSeq Stranded mRNA library prep kit (with poly-A selection) and sequenced on a NovaSeq6000 or Novaseq X plus (2 x 150 paired end). Basecalling and sample-specific fastq files were done using Illumina's bcl2fastq  in default parameters. Reads were uniquely mapped to hg38 reference genome using STAR aligner (version 2.7.8a; REF; RFID, --outFilterMultimapNmax 1, --outFilterMismatchNoverLmax 0.03).  TE and gene quantification was performed using featureCounts (subread package version 1.6.3; REF; RFID -s 2) and gencode annotation version 38, repeatmasker (open-4.0.5, filtered from tRNAs, simple repeats, small RNAs, and low-complexity regions), or retrotector predictions annotation.





This dataset is made available to researchers via the ASAP CRN Cloud: cloud.parkinsonsroadmap.org. Instructions for how to request access can be found in the User Manual.

This research was funded by the Aligning Science Across Parkinson's Collaborative Research Network (ASAP CRN), through the Michael J. Fox Foundation for Parkinson's Research (MJFF).

This Zenodo deposit was created by the ASAP CRN Cloud staff on behalf of the dataset authors. It provides a citable reference for a CRN Cloud Dataset
DOI: 10.15468/dl.759ncn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Austroglanis barnardi, Austroglanis gilli, Labeo seeberi, Pseudobarbus capensis, Oreochromis niloticus, Pseudocrenilabrus philander, Tinca tinca, Pseudobarbus burgi, Gilchristella aestuaria, Micropterus punctulatus, Mugil cephalus, Redigobius dewaali, Labeo umbratus, Cyprinus carpio, Oreochromis mossambicus, Pseudobarbus asper, Clarias gariepinus, Micropterus salmoides, Gambusia affinis, Pseudobarbus verloreni, Monodactylus falciformis, Galaxias zebratus, Oncorhynchus mykiss, Sandelia capensis, Hydrocynus vittatus, Micralestes acutidens, Carassius auratus, Ctenopharyngodon idella, Engraulicypris brevianalis, Enteromius afrohamiltoni, Enteromius amatolicus, Enteromius annectens, Enteromius argenteus, Enteromius bifrenatus, Enteromius eutaenia, Enteromius mattozi, Enteromius motebensis, Enteromius paludinosus, Enteromius radiatus, Enteromius toppini, Enteromius treurensis, Enteromius trimaculatus, Enteromius viviparus, Labeo congoro, Labeo cylindricus, Labeo molybdinus, Labeo rosae, Labeo rubromaculatus, Labeo ruddi, Labeobarbus natalensis, Labeobarbus nelspruitensis, Pseudobarbus senticeps, Pseudobarbus swartzi, Micropanchax johnstoni, Xiphophorus hellerii, Xiphophorus maculatus, Nothobranchius orthonotus, Nothobranchius pienaari, Megalops cyprinoides, Kneria auriculata, Marcusenius caudisquamatus, Marcusenius krameri, Petrocephalus wesselsi, Ambassis ambassis, Ctenopoma multispine, Microctenopoma intermedium, Sandelia bainsii, Oreochromis aureus, Oreochromis placidus, Serranochromis meridianus, Silhouettea sibayi, Perca fluviatilis, Salvelinus fontinalis, Austroglanis sclateri, Chiloglanis anoterus, Chiloglanis bifurcus, Chiloglanis emarginatus, Chiloglanis paratus, Chiloglanis pretoriae, Chiloglanis swierstrai, Schilbe intermedius, Anguilla bicolor, Brycinus imberi, Enteromius anoplus, Enteromius brevipinnis, Enteromius lineomaculatus, Enteromius neefi, Enteromius pallidus, Enteromius unitaeniatus, Hypophthalmichthys molitrix, Labeo capensis, Labeobarbus aeneus, Labeobarbus marequensis, Labeobarbus polylepis, Pseudobarbus skeltoni, Pseudobarbus phlegethon, Pseudobarbus quathlambae, Pseudobarbus tenuis, Marcusenius pongolensis, Ambassis natalensis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.529 -24.0715,20.509 -24.0455,20.509 -24.0715,20.529 -24.0715))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019292-250827131500795/datasets/export for details.
DOI: 10.5281/zenodo.16929448
title: Deep bulk RNAseq of neurological controls and PD brains

description: This Zenodo deposit contains a publicly available description of the Dataset:

Title: "Deep bulk RNAseq of neurological controls and PD brains".

Description: Human post-mortem brain tissue from donors with Lewy Body pathology and neurologically healthy controls was sourced from the Cambridge Brain Bank under London–Bloomsbury Research Ethics Committee (REC reference no. 16/LO/0508). Donors with Lewy Body pathology (n=25) had a clinical diagnosis of Parkinson's disease and were compared to an age- and sex-matched group of neurologically healthy control donors (n=18) who had no history of neurological illness. A neuropathologist assessed all cases for Lewy Body pathology Braak staging, co-existing proteinopathies and other pathologies. Fresh frozen tissue was sampled from SN,  PUT, AMY, and PFC at the level of Brodmann area 46 (PFC). A 3 mm3 tissue piece was cut from the same tissue block that had been used for snRNA sequencing and disrupted using a Tissuelyser (Qiagen). A steel bead and RLT buffer with -mercaptoethanol was added to the Tissuelyser and shaken at 30 Hz for 2 minutes. Total RNA was isolated from the disrupted tissue using the RNeasy Mini Kit (Qiagen; RRID). The sequencing libraries were then generated using Illumina TruSeq Stranded mRNA library prep kit (with poly-A selection) and sequenced on a NovaSeq6000 or Novaseq X plus (2 x 150 paired end). Basecalling and sample-specific fastq files were done using Illumina's bcl2fastq  in default parameters. Reads were uniquely mapped to hg38 reference genome using STAR aligner (version 2.7.8a; REF; RFID, --outFilterMultimapNmax 1, --outFilterMismatchNoverLmax 0.03).  TE and gene quantification was performed using featureCounts (subread package version 1.6.3; REF; RFID -s 2) and gencode annotation version 38, repeatmasker (open-4.0.5, filtered from tRNAs, simple repeats, small RNAs, and low-complexity regions), or retrotector predictions annotation.





This dataset is made available to researchers via the ASAP CRN Cloud: cloud.parkinsonsroadmap.org. Instructions for how to request access can be found in the User Manual.

This research was funded by the Aligning Science Across Parkinson's Collaborative Research Network (ASAP CRN), through the Michael J. Fox Foundation for Parkinson's Research (MJFF).

This Zenodo deposit was created by the ASAP CRN Cloud staff on behalf of the dataset authors. It provides a citable reference for a CRN Cloud Dataset
DOI: 10.5281/zenodo.16957831
title: DISREGARD. Deep bulk RNAseq of neurological controls and PD brains

description: erroneous sub-version.

This Zenodo deposit contains a publicly available description of the Dataset:

Title: "Deep bulk RNAseq of neurological controls and PD brains".

Description: Human post-mortem brain tissue from donors with Lewy Body pathology and neurologically healthy controls was sourced from the Cambridge Brain Bank under London–Bloomsbury Research Ethics Committee (REC reference no. 16/LO/0508). Donors with Lewy Body pathology (n=25) had a clinical diagnosis of Parkinson's disease and were compared to an age- and sex-matched group of neurologically healthy control donors (n=18) who had no history of neurological illness. A neuropathologist assessed all cases for Lewy Body pathology Braak staging, co-existing proteinopathies and other pathologies. Fresh frozen tissue was sampled from SN, PUT, AMY, and PFC at the level of Brodmann area 46 (PFC). A 3 mm3 tissue piece was cut from the same tissue block that had been used for snRNA sequencing and disrupted using a Tissuelyser (Qiagen). A steel bead and RLT buffer with -mercaptoethanol was added to the Tissuelyser and shaken at 30 Hz for 2 minutes. Total RNA was isolated from the disrupted tissue using the RNeasy Mini Kit (Qiagen; RRID). The sequencing libraries were then generated using Illumina TruSeq Stranded mRNA library prep kit (with poly-A selection) and sequenced on a NovaSeq6000 or Novaseq X plus (2 x 150 paired end). Basecalling and sample-specific fastq files were done using Illumina's bcl2fastq in default parameters. Reads were uniquely mapped to hg38 reference genome using STAR aligner (version 2.7.8a; REF; RFID, --outFilterMultimapNmax 1, --outFilterMismatchNoverLmax 0.03). TE and gene quantification was performed using featureCounts (subread package version 1.6.3; REF; RFID -s 2) and gencode annotation version 38, repeatmasker (open-4.0.5, filtered from tRNAs, simple repeats, small RNAs, and low-complexity regions), or retrotector predictions annotation.



This dataset is made available to researchers via the ASAP CRN Cloud: cloud.parkinsonsroadmap.org. Instructions for how to request access can be found in the User Manual.

This research was funded by the Aligning Science Across Parkinson's Collaborative Research Network (ASAP CRN), through the Michael J. Fox Foundation for Parkinson's Research (MJFF).

This Zenodo deposit was created by the ASAP CRN Cloud staff on behalf of the dataset authors. It provides a citable reference for a CRN Cloud Dataset
DOI: 10.15468/dl.d7w5at
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.28_1",
 "TaxonKey is Caragana halodendron"
 ]
}

 The dataset includes 235 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019293-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dcyr7w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Afrixalus aureus, Acinonyx jubatus, Pelomedusa galeata, Pelomedusa, Kinixys spekii, Kinixys, Stigmochelys pardalis, Stigmochelys, Caretta caretta, Caretta, Dermochelys coriacea, Dermochelys, Homopus areolatus, Homopus, Chersina angulata, Chersina, Psammobates, Chersobius signatus, Chersobius, Psammobates tentorius, Psammobates tentorius verroxii, Pelomedusa subrufa, Psammobates oculifer, Psammobates tentorius trimeni, Lepidochelys olivacea, Lepidochelys, Chelonia mydas, Chelonia, Kinixys lobatsiana, Pelusios, Kinixys natalensis, Pelusios sinuatus, Psammobates tentorius tentorius, Homopus femoralis, Loxodonta africana, Trexus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((24.0314 -33.9175,24.0347 -33.8972,24.0208 -33.9059,24.0314 -33.9175))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019294-250827131500795/datasets/export for details.
DOI: 10.21227/5qzc-gm79
title: "Dataset relative to \"Single-channel wearable EEG using low-power Qvar sensor and machine learning for drowsiness detection\""

description: "We report EEG data recorded using the Qvar single-channel device positioned at F7, with a reference on the mastoid.To induce a state of sleep deprivation, participants were asked to sleep for a maximum of 4 hours the night before the acquisition session. Additionally, participants were instructed to abstain from any stimulant substances, such as coffee or cigarettes, for 24 hours prior to the session. The data acquisition sessions lasted at most 30 minutes always with eyes opened, during which the first 5 minutes were conducted with the light on, and the remaining minutes with the light off. During the acquisition, participants were seating in front of a monitor displaying a relaxing video, with a fixation point in the centre of the screen to minimize ocular movement artefacts. Throughout the 30-minute session, visual stimuli (coloured windows) appeared randomly on the monitor at intervals ranging from 1 to 10 seconds. Participants were instructed to respond to these stimuli by pressing a key on the keyboard. In our recording sessions, the measured reaction times were always shorter than 10 seconds. Reaction time values are also listed. "
DOI: 10.6084/m9.figshare.30009451.v1
title: gammarus_mcpa_exposure_functional_response_data.csv

description: This data contains the number of prey consumed by each gammarid during the functional response trial.
DOI: 10.6084/m9.figshare.30009454
title: predator_control_mortality_data.csv

description: This data contains prey mortality in the absence of gammarid predators during the functional response trial.
DOI: 10.6084/m9.figshare.30009454.v1
title: predator_control_mortality_data.csv

description: This data contains prey mortality in the absence of gammarid predators during the functional response trial.
DOI: 10.6084/m9.figshare.30009457
title: gammarus_mcpa_exposure_attack_handling_time.csv

description: This data relates to the attack and handling times derived from the functional response model.
DOI: 10.6084/m9.figshare.30009457.v1
title: gammarus_mcpa_exposure_attack_handling_time.csv

description: This data relates to the attack and handling times derived from the functional response model.
DOI: 10.6084/m9.figshare.30009568
title: gammarus_96h_mcpa_exposure_mortality.csv

description: This data relates the number of gammarid mortalites which occured during the 96h pesticide exposure.
DOI: 10.6084/m9.figshare.30009568.v1
title: gammarus_96h_mcpa_exposure_mortality.csv

description: This data relates the number of gammarid mortalites which occured during the 96h pesticide exposure.
DOI: 10.6084/m9.figshare.30009451
title: gammarus_mcpa_exposure_functional_response_data.csv

description: This data contains the number of prey consumed by each gammarid during the functional response trial.
DOI: 10.15468/dl.bwnu9g
title: Occurrence Download

description: A dataset containing 88820 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Carex montana"
 ]
}

 The dataset includes 88820 records from 413 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019212-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.