cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6620084
title: Phonon calculations and measurements dataset for use with the Euphonic program

description: A dataset of ab initio phonon calculation input and output files for the CASTEP, VASP and PHONOPY codes, together with inelastic neutron scattering measurements from the MERLIN and MARI spectrometers at the ISIS Neutron and Muon Source. The dataset comprises data on five materials (Aluminium, La2Zr2O7, Niobium, Quartz and Silicon) as shown in the publication "<em>Euphonic</em>: inelastic neutron scattering simulations from force constants and visualisation tools for phonon properties" by R. Fair et al., and is organised into folders for each material. There are also accompanying python and matlab scripts for handling the datafiles. The main zip file, <code> euphonic_data.zip</code>, contains DFT output files (*.castep_bin, and phonopy.yaml) which can be used with the Euphonic python program ( https://euphonic.readthedocs.io/ ) which has been developed to efficiently calculate phonon bandstructures and inelastic neutron spectra. It also contains INS measured powder datafiles for Aluminium and Silicon and scripts using the Mantid program to read and plot these data. Scripts for handling the measured single-crystal INS data on Quartz and the small subset of the data shown in the publication are included in <code>euphonic_data.zip</code> but the full datafiles are in a separate archive, <code>quartz_raw_data.zip</code>.
DOI: 10.34740/kaggle/dsv/4668515
title: AutoXGB
DOI: 10.5281/zenodo.7404141
title: Citizen Science Initiatives in Greece

description: This dataset contains original mapping data developed in the process of the Greek Citizen Science landscape review. In total, 20 Greek Citizen Science projects were analysed according to a common framework. During the mapping process, we weren’t always able to find information on things that interested us e.g. project impact, stakeholder engagement, the size of the volunteering force. But just because we couldn’t find something does not mean the results or activities did not happen. It goes without saying that absence of evidence is not evidence of absence. Failure to find some information on our part can be explained by the fact that we worked primarily with internet sources, so we had to make do with whatever publicly available information we could find within reasonable time.
DOI: 10.5281/zenodo.7404140
title: Citizen Science Initiatives in Greece

description: This dataset contains original mapping data developed in the process of the Greek Citizen Science landscape review. In total, 20 Greek Citizen Science projects were analysed according to a common framework. During the mapping process, we weren’t always able to find information on things that interested us e.g. project impact, stakeholder engagement, the size of the volunteering force. But just because we couldn’t find something does not mean the results or activities did not happen. It goes without saying that absence of evidence is not evidence of absence. Failure to find some information on our part can be explained by the fact that we worked primarily with internet sources, so we had to make do with whatever publicly available information we could find within reasonable time.
DOI: 10.6084/m9.figshare.21667631
title: inorganic ion

description: inorganic ion concentrations at Aydat lake and rainwater
DOI: 10.6084/m9.figshare.21667631.v3
title: inorganic ion

description: inorganic ion concentrations at Aydat lake and rainwater
DOI: 10.6084/m9.figshare.21667631.v2
title: inorganic ion

description: inorganic ion concentrations at Aydat lake and rainwater
DOI: 10.6084/m9.figshare.21679361.v2
title: Isolation and Characterization of an HKU4-related coronavirus circulating in Malayan pangolin

description: As the mostly trafficked mammal, pangolins may play important role in coronaviruses zoonotic transmission cycle. Here, we report the circulation of a Tylonycteris bat coronavirus HKU4-related coronavirus from smuggled Malayan pangolins ( Manis javanica ), including 4 viral nucleotide positive and another 7 viral seropositives from 86 animals. Four almost identical (99%) genomes were identified and a MjHKU4r-CoV- 1 virus was isolated, which uses human dipeptidyl peptidase-4 (hDPP4) as receptor and human proteases for cell infection, and this infection is enhanced by a furin cleavage site that is absent in the bat HKU4r-CoVs. In addition, the MjHKU4r-CoV-1 spike showed higher binding affinity to the hDPP4 or wider host range than the bat HKU4-CoV. Finally, MjHKU4r-CoV-1 is productively infectious and pathogenic in human airway, intestinal organs or in hDPP4 transgenic mice. Our work highlighted the importance of pangolins as susceptible hosts of bat-related coronaviruses that poised for human emergence.
DOI: 10.6084/m9.figshare.21667595
title: Flow_cytometry_2020.csv

description: Photosynthetic cells events recorded in rainwater
DOI: 10.6084/m9.figshare.21667595.v2
title: Flow_cytometry_2020.csv

description: Photosynthetic cells events recorded in rainwater
DOI: 10.6084/m9.figshare.21667595.v1
title: Flow_cytometry_2020.csv

description: Photosynthetic cells events recorded in rainwater
DOI: 10.21227/85ty-jf65
title: Gestational Diabetes

description: Gestational diabetes is a type of high blood sugar that develops during pregnancy. It can occur at any stage of pregnancy and cause problems for both the mother and the baby, during and after birth. The risks can be reduced if they are early detected and managed, especially in areas where only periodic tests of pregnant women are available. Intelligent systems designed by machine learning algorithms are remodelling all fields of our lives, including the healthcare system. This study proposes a combined prediction model to diagnose gestational diabetes. The dataset was obtained from the Kurdistan region laboratories, which collected information from pregnant women with and without diabetes. The suggested model uses the clustering KMeans technique for data reduction and the elbow method to find the optimal k value and the Mahalanobis distance method to find more related cluster to new samples, and the classification methods such as decision tree, random forest, SVM, KNN, logistic regression, and Naïve Bayes are used for prediction. The results showed that using a mix of KMeans clustering, elbow method, Mahalanobis distance, and ensemble technique significantly improves prediction accuracy.
DOI: 10.6084/m9.figshare.21679415
title: Coordinated supraspinal and spinal neurostimulation guides circuit rewiring and unlocks motor recovery after spinal cord injury (RNASeq Data)

description: A comparison of differentially expressed genes in the cervical 3rd and 4th segments of mouse spinal cord following spinal cord injury and coordinated stimulation of corticospinal projection neurons and long propriospinal neurons.
DOI: 10.6084/m9.figshare.19603744
title: Parsivel data

description: Rain rate, DSD from Parsivel
DOI: 10.6084/m9.figshare.19603759
title: HOBO sensorsdata

description: Lake temperatures from HOBO
DOI: 10.6084/m9.figshare.19603759.v2
title: HOBO sensorsdata

description: Lake temperatures from HOBO
DOI: 10.6084/m9.figshare.19603759.v1
title: HOBO sensorsdata

description: Lake temperatures from HOBO
DOI: 10.5281/zenodo.7404184
title: Folk children's songs with tragic elements

description: The database collects the results of manual content analysis, formal analysis of the lyrics and musical analysis of the scores of a corpus of 506 Spanish children's folk songs identified as tragic by a previous analysis.
DOI: 10.5281/zenodo.7404183
title: Folk children's songs with tragic elements

description: The database collects the results of manual content analysis, formal analysis of the lyrics and musical analysis of the scores of a corpus of 506 Spanish children's folk songs identified as tragic by a previous analysis.
DOI: 10.6084/m9.figshare.19145372
title: Extreme strain values

description: Extreme values of principal true strains of each specimen<br>
DOI: 10.6084/m9.figshare.19145372.v1
title: Extreme strain values

description: Extreme values of principal true strains of each specimen<br>
DOI: 10.6084/m9.figshare.21119569.v2
title: Evaluation of risk factors associated with SARS-CoV-2 transmission

description: Coronavirus disease 2019 (COVID-19) has caused high morbidity and mortality worldwide. Since there is not enough evidence of risk factors of SARS-CoV-2 transmission, this study aimed to evaluate them. This survey-based study was conducted across 66 countries from May to November 2020 among suspected and confirmed individuals with COVID-19. The stepwise AIC method was utilized to determine the optimal multivariable logistic regression to explore predictive factors of SARS-CoV-2 transmission. Among 2372 respondents who participated in the study, there were 1172 valid responses. The profession of non-healthcare-worker (OR: 1.77, 95%CI: 1.04–3.00, <i>p</i> = .032), history of SARS-CoV or MERS-CoV infection (OR: 4.78, 95%CI: 2.34–9.63, <i>p</i> &lt; .001), higher frequency of contact with colleagues (OR: 1.17, 95%CI: 1.01–1.37, <i>p</i> = .041), and habit of hugging when greeting (OR: 1.25, 95%CI: 1.00–1.56, <i>p</i> = .049) were associated with an increased risk of contracting COVID-19. Current smokers had a lower likelihood of having COVID-19 compared to former smokers (OR: 5.41, 95%CI: 1.93–17.49, <i>p</i> = .002) or non-smokers (OR: 3.69, 95%CI: 1.48–11.11, <i>p</i> = .01). Our study suggests several risk factors for SARS-CoV-2 transmission including the profession of non-healthcare workers, history of other coronavirus infections, frequent close contact with colleagues, the habit of hugging when greeting, and smoking status. Since there is not enough evidence of risk factors of SARS-CoV-2 transmission, this study aimed to evaluate them. The risk of SARS-CoV-2 infection was higher among non-healthcare workers and among those who had a history of being tested positive for SARS-CoV or MERS-CoV before the COVID-19 outbreak. The habit of frequent contact with colleagues or hugging when greeting significantly increased the risk of being infected with SARS-CoV-2. The current smokers had a lower risk of getting infected with SARS-CoV-2 than others who had a habit of smoking tobacco in the past or who had never smoked.
DOI: 10.6084/m9.figshare.21119569
title: Evaluation of risk factors associated with SARS-CoV-2 transmission

description: Coronavirus disease 2019 (COVID-19) has caused high morbidity and mortality worldwide. Since there is not enough evidence of risk factors of SARS-CoV-2 transmission, this study aimed to evaluate them. This survey-based study was conducted across 66 countries from May to November 2020 among suspected and confirmed individuals with COVID-19. The stepwise AIC method was utilized to determine the optimal multivariable logistic regression to explore predictive factors of SARS-CoV-2 transmission. Among 2372 respondents who participated in the study, there were 1172 valid responses. The profession of non-healthcare-worker (OR: 1.77, 95%CI: 1.04–3.00, <i>p</i> = .032), history of SARS-CoV or MERS-CoV infection (OR: 4.78, 95%CI: 2.34–9.63, <i>p</i> &lt; .001), higher frequency of contact with colleagues (OR: 1.17, 95%CI: 1.01–1.37, <i>p</i> = .041), and habit of hugging when greeting (OR: 1.25, 95%CI: 1.00–1.56, <i>p</i> = .049) were associated with an increased risk of contracting COVID-19. Current smokers had a lower likelihood of having COVID-19 compared to former smokers (OR: 5.41, 95%CI: 1.93–17.49, <i>p</i> = .002) or non-smokers (OR: 3.69, 95%CI: 1.48–11.11, <i>p</i> = .01). Our study suggests several risk factors for SARS-CoV-2 transmission including the profession of non-healthcare workers, history of other coronavirus infections, frequent close contact with colleagues, the habit of hugging when greeting, and smoking status. Since there is not enough evidence of risk factors of SARS-CoV-2 transmission, this study aimed to evaluate them. The risk of SARS-CoV-2 infection was higher among non-healthcare workers and among those who had a history of being tested positive for SARS-CoV or MERS-CoV before the COVID-19 outbreak. The habit of frequent contact with colleagues or hugging when greeting significantly increased the risk of being infected with SARS-CoV-2. The current smokers had a lower risk of getting infected with SARS-CoV-2 than others who had a habit of smoking tobacco in the past or who had never smoked.
DOI: 10.6084/m9.figshare.21295674
title: Adherence to colorectal cancer screening and healthcare resource utilization: a longitudinal analysis in Medicare beneficiaries aged 66–75 years

description: In this study, we examined colorectal cancer (CRC) screening adherence in Medicare beneficiaries and associated healthcare resource utilization (HCRU) and Medicare costs. Using 20% Medicare random sample data, the study population included Medicare fee-for-service beneficiaries aged 66–75 years on 1 January 2009, at average risk for CRC and continuously enrolled in Medicare Part A/B from 2008 to 2018. We excluded those who had undergone colonoscopy or flexible sigmoidoscopy during 2007–2008 and assumed everyone was due for screening in 2009; screening patterns were determined for 2009–2018. Based on US Preventive Services Task Force recommendations, individuals were categorized as adherent to screening, inadequately screened or not screened. HCRU and Medicare costs were calculated as mean per patient per year (PPPY). Of 895,846 eligible individuals, 13.2% were adherent to screening, 53.4% were inadequately screened, and 33.4% were not screened. Compared with those not screened, adherent or inadequately screened individuals were more likely to be female, White and have comorbidities. These individuals also used more healthcare services, generating higher Medicare costs. For example, physician visits were 14.6, 22.9 and 25.9 PPPY and total Medicare costs were $6102, $8469 and $9102 PPPY for those not screened, inadequately screened and adherent, respectively. In Medicare beneficiaries at average risk, adherence to CRC screening was low, although the rate might be underestimated due to lack of early Medicare data. The link between HCRU and screening status suggests that screening initiatives independent of clinical visits may be needed to reach unscreened or inadequately screened individuals.
DOI: 10.6084/m9.figshare.21295674.v2
title: Adherence to colorectal cancer screening and healthcare resource utilization: a longitudinal analysis in Medicare beneficiaries aged 66–75 years

description: In this study, we examined colorectal cancer (CRC) screening adherence in Medicare beneficiaries and associated healthcare resource utilization (HCRU) and Medicare costs. Using 20% Medicare random sample data, the study population included Medicare fee-for-service beneficiaries aged 66–75 years on 1 January 2009, at average risk for CRC and continuously enrolled in Medicare Part A/B from 2008 to 2018. We excluded those who had undergone colonoscopy or flexible sigmoidoscopy during 2007–2008 and assumed everyone was due for screening in 2009; screening patterns were determined for 2009–2018. Based on US Preventive Services Task Force recommendations, individuals were categorized as adherent to screening, inadequately screened or not screened. HCRU and Medicare costs were calculated as mean per patient per year (PPPY). Of 895,846 eligible individuals, 13.2% were adherent to screening, 53.4% were inadequately screened, and 33.4% were not screened. Compared with those not screened, adherent or inadequately screened individuals were more likely to be female, White and have comorbidities. These individuals also used more healthcare services, generating higher Medicare costs. For example, physician visits were 14.6, 22.9 and 25.9 PPPY and total Medicare costs were $6102, $8469 and $9102 PPPY for those not screened, inadequately screened and adherent, respectively. In Medicare beneficiaries at average risk, adherence to CRC screening was low, although the rate might be underestimated due to lack of early Medicare data. The link between HCRU and screening status suggests that screening initiatives independent of clinical visits may be needed to reach unscreened or inadequately screened individuals.
DOI: 10.6084/m9.figshare.21119569.v1
title: Evaluation of risk factors associated with SARS-CoV-2 transmission

description: Coronavirus disease 2019 (COVID-19) has caused high morbidity and mortality worldwide. Since there is not enough evidence of risk factors of SARS-CoV-2 transmission, this study aimed to evaluate them. This survey-based study was conducted across 66 countries from May to November 2020 among suspected and confirmed individuals with COVID-19. The stepwise AIC method was utilized to determine the optimal multivariable logistic regression to explore predictive factors of SARS-CoV-2 transmission. Among 2372 respondents who participated in the study, there were 1172 valid responses. The profession of non-healthcare-worker (OR: 1.77, 95%CI: 1.04 – 3.00, p = 0.032), history of SARS-CoV or MERS-CoV infection (OR: 4.78, 95%CI: 2.34 – 9.63, p &lt; 0.001), higher frequency of contact with colleagues (OR: 1.17, 95%CI: 1.01 – 1.37, p = 0.041), and habit of hugging when greeting (OR: 1.25, 95%CI: 1.00 – 1.56, p = 0.049) were associated with an increased risk of contracting COVID-19. Current smokers had a lower likelihood of having COVID-19 compared to former smokers (OR: 5.41, 95%CI: 1.93-17.49, p = 0.002) or non-smokers (OR: 3.69, 95%CI: 1.48-11.11, p = 0.01). Our study suggests several risk factors for SARS-CoV-2 transmission including the profession of non-healthcare workers, history of other coronavirus infections, frequent close contact with colleagues, the habit of hugging when greeting, and smoking status. Since there is not enough evidence of risk factors of SARS-CoV-2 transmission, this study aimed to evaluate them. The risk of SARS-CoV-2 infection was higher among non-healthcare workers and among those who had a history of being tested positive for SARS-CoV or MERS-CoV before the COVID-19 outbreak. The habit of frequent contact with colleagues or hugging when greeting significantly increased the risk of being infected with SARS-CoV-2. The current smokers had a lower risk of getting infected with SARS-CoV-2 than others who had a habit of smoking tobacco in the past or who had never smoked.
DOI: 10.6084/m9.figshare.21295674.v1
title: Adherence to colorectal cancer screening and healthcare resource utilization: a longitudinal analysis in Medicare beneficiaries aged 66-75 Years

description: In this study, we examined colorectal cancer (CRC) screening adherence in Medicare beneficiaries and associated healthcare resource utilization (HCRU) and Medicare costs. Using 20% Medicare random sample data, the study population included Medicare fee-for-service beneficiaries aged 66-75 years on January 1, 2009, at average-risk for CRC and continuously enrolled in Medicare Part A/B from 2008-2018. We excluded those who had undergone colonoscopy or flexible sigmoidoscopy during 2007-2008 and assumed everyone was due for screening in 2009; screening patterns were determined for 2009-2018. Based on US Preventive Services Task Force recommendations, individuals were categorized as adherent to screening, inadequately screened, or not screened. HCRU and Medicare costs were calculated as mean per patient per year (PPPY). Of 895,846 eligible individuals, 13.2% were adherent to screening, 53.4% were inadequately screened, and 33.4% were not screened. Compared with those not screened, adherent or inadequately screened individuals were more likely to be female, White, and have comorbidities. These individuals also used more healthcare services, generating higher Medicare costs. For example, physician visits were 14.6, 22.9, and 25.9 PPPY and total Medicare costs were $6102, $8469, and $9102 PPPY for those not screened, inadequately screened, and adherent, respectively. In Medicare beneficiaries at average risk, adherence to CRC screening was low, although the rate might be underestimated due to lack of early Medicare data. The link between HCRU and screening status suggests that screening initiatives independent of clinical visits may be needed to reach unscreened or inadequately screened individuals.
DOI: 10.6084/m9.figshare.20291939.v2
title: An overview of the characteristics and methodological standards across systematic reviews with Meta-analysis of efficacy/effectiveness of influenza antiviral drugs

description: Influenza antiviral drugs remain controversial and it is not clear if conclusions on their efficacy/effectiveness are based on high quality systematic reviews (SRs). We systematically identified, critically appraised, and summarized the characteristics and adherence to methodological standards in SRs with meta-analysis of efficacy/effectiveness of influenza antiviral drugs for prevention and/or treatment of influenza. We searched MEDLINE, Embase, Scopus, CINAHL, Global Health, and CDSR for English-language SR publications up to July 2020. We summarized the characteristics, adherence to methodological standards and SR quality (AMSTAR 2). From a total 3,898 citations after removal of duplicates from all identified citations, we included 24 SRs. Seventy-five percent (<i>n</i> = 18) were of a critically low quality, 8% (<i>n</i> = 2) of a low quality, 17% (<i>n</i> = 4) of a moderate quality, and none were of a high quality. Seventeen percent (<i>n</i> = 4) were industry-funded, 4% (<i>n</i> = 1) coauthored by industry employee(s), and 33% (<i>n</i> = 8) commissioned by an organization or authority. Only 33% percent (<i>n</i> = 8) reported protocol registration, 4% (<i>n</i> = 1) reported collaboration with a knowledge synthesis librarian/information specialist, and 17% (<i>n</i> = 4) utilized a systematic review reporting checklist. The evidence suggests that SRs of efficacy/effectiveness of influenza antiviral drugs are mostly of critically low quality and do not follow current best SR practices. These findings are significant in view of the important role of SRs in decision-making and the controversies that surround the use of the influenza antiviral drugs. However, the findings should not be interpreted to mean curtailment/cessation of use of antiviral drugs for influenza.