cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1g1jwsv1f
title: Does weather drive habitat use and movement of a non-migratory bird?

description: Climate change is predicted to increase the intensity and frequency of
 weather extremes (e.g., extreme heat and drought), which will likely
 affect wildlife species in significant ways. Maintaining landscape
 heterogeneity has been suggested as a potential conservation strategy to
 buffer animals from weather extremes. Because animal movement influences
 survival and population connectivity, understanding animal space use and
 movement in response to shifts in weather is useful for the conservation
 of wildlife. Non-migratory species are predicted to be more negatively
 affected by climate change because they have a limited ability to disperse
 to find resources. We studied the Northern Bobwhite (Colinus virginianus;
 hereafter, bobwhite) to understand how weather alters habitat use and
 movement of a non-migratory animal across a landscape. We collected
 telemetry locations on bobwhite across western Oklahoma during 2019–2020
 and paired these data with meteorological and vegetation data. We analyzed
 the data at 2 temporal scales – hourly locations and 12-hour paths. At the
 hourly scale, we analyzed tree cover use, shrub cover use, and normalized
 difference vegetation index (NDVI) use using generalized or linear-mixed
 models. At the 12-hour scale, we calculated three different movement
 metrics: cumulative distance, net displacement, and sinuosity, and
 analyzed each movement metric separately using generalized linear-mixed
 models. We found that bobwhite used denser tree cover and higher NDVI
 values as air temperature increased in conjunction with solar radiation.
 Bobwhite used denser shrub cover as air temperature increased and average
 wind speed was high as well as when air temperature and average wind speed
 were low. The interaction between variability in vegetation and climate
 influenced bobwhite movement. Bobwhite in areas with higher NDVI variance
 moved farther when mean air temperatures were &gt; 0°C than bobwhite
 in areas with low NDVI variance. When mean air temperatures were ≤ 0°C,
 NDVI variance had little effect on the cumulative distance moved of
 bobwhite. Our findings show that some animals use different vegetation
 types during different weather conditions and that variability in
 vegetation on the landscape and weather together alters animal movement.
 Managing for landscape heterogeneity is a solution that may buffer animals
 from increased climate variability in the future.
DOI: 10.5061/dryad.pc866t1sv
title: Dataset associated with the manuscript: Soil management legacy interacts with wheat genotype to determine access to organic N in a dryland system

description: Organic nutrient management through the application of compost and/or
 cover crops provides mineralizable sources of nutrients for plants while
 often building soil organic matter (SOM) and various aspects of soil
 health. Variability in nutrient acquisition strategies between crop
 genotypes may confer advantages under different soil health contexts and
 could be important for crop selection and breeding, but crop response
 under field conditions remains unexplored. We investigated the ability of
 different genotypes of winter wheat (Triticum aestivum L.) to
 access nitrogen (N) from newly added cover crop residues in two soils with
 contrasting levels of SOM and biological activity. We planted three
 previously characterized wheat genotypes in a long-term dryland compost
 amendment field trial: 1) Byrd (modern, deep roots, low exudation), 2)
 Cheyenne (historic, drought susceptible, intermediate exudation), and 3)
 Snowmass (modern, drought-susceptible, high
 exudation). 15N-labelled cover crop residue was added to each
 plot and traced into wheat tissue. In the low SOM soil, the high exudate
 genotype Snowmass and historic genotype Cheyenne took up the most
 residue-derived N (6.4-8.1 kg N ha-1) compared to the low-exudate genotype
 Byrd (4.4 kg N ha-1), suggesting a strong exudate effect in the more
 carbon-limited soil. However, the low-exudate, deep rooted genotype, Byrd,
 took up the most residue N in the high SOM soils (4.6 kg N
 ha-1 vs. 2.8 and 3.3 hg N ha-1 for Cheyenne and Snowmass,
 respectively), which indicated higher native N cycling activities and
 great importance of drought resistance. Enzyme activity, inorganic N, and
 microbial communities were not influenced by genotype, though did show
 strong effects of compost application legacy. Our results show that
 belowground allocation strategies that favor microbial stimulation may be
 less successful under water limitation, especially when high SOM can
 support mineralization of residue N without added investment in root
 inputs. Increased soil health through SOM-building management likely
 enhances nutrient cycling, and may better support root strategies that
 invest less in microbial stimulation in favor of other limiting resources.
description: This dataset includes yield, biogeochemical, and microbial data
 associated with a two-year field experiment carried out at the Central
 Great Plains Research Station in Akron, CO, USA.
DOI: 10.17632/5w58kkyj6c
title: Mohs-Facilitated Excision: A Case Series of a Multidisciplinary Approach to Reduce Local Recurrence of Advanced Keratinocyte Carcinomas - Supplemental Table

description: Supplemental Table I. Recurrence and metastases rates stratified by final microscopic margin status following multidisciplinary Mohs-facilitated excision for high-risk keratinocyte carcinomas.
DOI: 10.17632/5w58kkyj6c.1
title: Mohs-Facilitated Excision: A Case Series of a Multidisciplinary Approach to Reduce Local Recurrence of Advanced Keratinocyte Carcinomas - Supplemental Table

description: Supplemental Table I. Recurrence and metastases rates stratified by final microscopic margin status following multidisciplinary Mohs-facilitated excision for high-risk keratinocyte carcinomas.
DOI: 10.5061/dryad.8sf7m0css
title: Facial color diversity of Polistes paper wasps

description: Polistes paper wasps (Hymenoptera: Vespidae) are species-rich group of
 social insects. Researchers have noted a wide diversity in facial color
 patterns among species, and for
 several Polistes species, intraspecific variation in
 facial color patterns has been linked to signals of quality or individual
 identity. However, there have been no systematic descriptions of facial
 color pattern variation across the Polistes genera, limiting our
 understanding of the frequency of facial color patterns, how unique
 patterns are among species, and the degree of variation in facial color
 patterns within species. We photographed pinned museum specimens under
 visible and ultraviolet (UV) light. When few specimens were available, we
 included additional photos from iNaturalist, a database of citizen
 scientist images, resulting in a final dataset of 1,675 images from 131
 species. For each species, we provide an image of a representative female
 face, as well as information on intraspecific variation in female facial
 color patterns, and sexual dimorphism of facial color patterns, when
 available. Facial color patterns were common across species and were
 composed of a mixture of yellow, red-brown, and black pigments. Patterns
 were similar in visible and UV images. Spectral sensitivity curves for
 yellow, red-brown, and black pigmented regions have a similar shape for
 all Polistes species measured. Males frequently had yellow faces,
 and yellow male faces were correlated with sexual dimorphism.
 Intraspecific variation in female faces was common. Descriptions of facial
 color variation in Polistes will be vital to study the
 mechanisms driving interspecific and intraspecific diversity.
description: Pinned specimens of <em>Polistes</em> paper wasps
 were photographed using a Nikon 80mm f5.6 EL-Nikkor lens attached to a
 Canon 6D camera or a Canon MP-E 65mm f2.9 macro lens in visible light. All
 specimens were photographed against a delta-1 18% gray background. The
 main Polistes face image dataset contains .jpg files that have been color
 corrected and reduced in size using iPhoto. The original RAW files
 associated with each photo are also included in a separate RAWImages
 database.
DOI: 10.17632/v9d495mjcf.1
title: List of Listeria monocytogenes proteins

description: Listeria monocytogenes proteins identified from proteomic analysis LC-MS/MS. 4 strains of the bacterium (C5 serotype 4b, 6179 serotype 1/2A, ScottA serotype 4b, and Egd-e serotype 1/2A) were analyzed each one seperately. The proteins in this list give us a sight of the complex molecular mechanisms of this important foodborne pathogen. The list contains also the molecuar function and the biological process of each protein according to the keywords based on Swiss-Prot/UniprotKB database.
DOI: 10.5061/dryad.sf7m0cg9v
title: Data for: Sex-based divergence in tidal, lunar and seasonal cycles of activity in the olive sea snake, Aipysurus laevis (Elapidae, Hydrophiinae)

description: Marine environments show strong cycles at daily (tidal), monthly (lunar)
 and seasonal timeframes, and the behavioural responses of marine organisms
 to such cycles may depend upon ecological and behavioural traits that
 differ between the sexes. Underwater observations of free-ranging olive
 sea snakes (Aipysurus laevis, Hydrophiinae, Elapidae) at a site on the
 southern Great Barrier Reef revealed sex-based divergences in the effects
 of abiotic cycles on snake activity. Female snakes were active primarily
 on high and rising tides that allowed access to shallow-water sites for
 foraging. In contrast, male snakes were active primarily on low and
 falling tides, especially near the time of the full moon (when tidal range
 is highest), conditions that may restrict a female snake’s ability to
 evade a courting male. Males were common on the coral-reef site during
 winter (the mating season), but were rarely seen during summer, whereas
 females remained on the reef year-round. This highly sexually dimorphic
 species shows strong temporal separations between the sexes in patterns of
 activity.
description: One of the authors (Tim Lynch) dived at a site on the Great
 Barrier Reef and recorded the numbers and sexes of active sea
 snakes.
DOI: 10.5061/dryad.m37pvmd65
title: Data for: Can we ignore trait-dependent colonization and diversification in island biogeography?

description: The application of state-dependent speciation and extinction (SSE) models
 to phylogenetic trees has shown an important role for traits in
 diversification. However, this role remains comparatively unexplored on
 islands, which can include multiple independent clades resulting from
 different colonization events. To explore whether assuming no dependence
 on traits leads to bias in inference on island dynamics, we extend an
 island biodiversity model, DAISIE (Dynamic Assembly of Islands through
 Speciation, Immigration and Extinction) to include trait-dependent
 diversification simulations, and evaluate the robustness of the inference
 model which ignores this trait-dependence. Our results indicate that when
 the differences between colonization, extinction and speciation rates
 between trait states are moderate, the model shows negligible error for a
 variety of island diversity metrics, suggesting that island diversity
 dynamics can be accurately estimated without the need to explicitly model
 trait dependence. We conclude that for many biologically realistic
 scenarios with trait-dependent diversification and colonization, this
 simple trait-less inference model is informative and robust to trait
 effects on colonization, speciation and extinction. Nonetheless, our new
 simulation model may provide a useful tool for studying patterns of trait
 variation.
description: Data was generated using the pipeline implemented in the R
 package `DAISIErobustness` using the function `run_robustness()`, which
 itself greatly depends on the R package `DAISIE`. The code for these
 packages is version controlled on GitHub and is freely available in
 open-source repositories.
DOI: 10.6078/d11h7d
title: Data for: The effect of Pliocene regional climate changes on silicate weathering

description: This dataset stores the data of the article "The effect of Pliocene
 regional climate changes on silicate weathering: a potential amplifier of
 Pliocene-Pleistocene cooling",(P. Maffre, J. Chiang & N.
 Swanson-Hysell, submitted to Climate of the Past). This study uses a
 climate model (GCM) to reproduce an estimate of Pliocene Sea Surface
 Temperature (SST). The main GCM outputs of this modeling (with a slab
 ocean model) are stored in "GCM_outputs_for_GEOCLIM/", as well
 as the climatologies from ERA5 reanalysis. The other GCM outputs that were
 used in intermediary steps (coupled ocean-atmosphere, and fixed SST
 simulations) are stored in "other_GCM_outputs/". The forcing
 files (Q-flux) and other boundary conditions to run the "main"
 GCM simulations can be found in
 "other_GCM_outputs/Q-flux_derivation/", as well as the scripts
 used to generate them. Secondly, the mentioned study uses the GCM outputs
 in "GCM_outputs_for_GEOCLIM/" as inputs for the silicate
 weathering model GEOCLIM-DynSoil-Steady-State
 (https://github.com/piermafrost/GEOCLIM-dynsoil-steady-state/tree/PEN), to
 investigate weathering and equilibrium CO2 changes due to Pliocene SST
 conditions. The results of these simulations are stored in
 "GEOCLIM-DynSoil-Steady-State_outputs/". The purpose of this
 dataset is to provide the raw outputs used to draw the conclusions of
 Maffre et al. (submitted to Climate of the Past), and to allow the
 experiments to be reproduced, by providing the scripts to generate the
 boundary conditions.
DOI: 10.5061/dryad.mw6m9061b
title: Population average skull model obtained by means of statistical shape modelling

description: Sagittal Craniosynostosis (SC) is a congenital condition whereby the
 newborn skull develops abnormally due to premature ossification of the
 sagittal suture. Spring-assisted cranioplasty (SAC) is a minimally
 invasive surgical technique to treat SC where metallic distractors are
 used to reshape the newborn’s head. Although safe and effective, SAC
 outcomes remain uncertain due to the limited understanding of
 skull-distractor interaction and limited information provided by the
 analysis of single surgical cases. Hereby, an
 SC population average skull model was
 created to simulate spring insertion by means of finite
 element analysis.
description: The GOSH Craniofacial Unit patient database was reviewed, and 13
 SAC patients (11 male, age at SAC = 5.6 ± 0.7 months [4.6–6.7 months]),
 operated between 2011 and 2016, were included in this study. Each patient
 had a pre-op computer tomography (CT) performed between 3.2 months and 6
 days earlier (age at CT = 4.2 ± 0.7 months [3.0–5.3 months]). Ethical
 approval was obtained for the use of patient image data for research
 purposes (UK REC 15/ LO/0386 - Research Ethics Committee approval - study
 n.14DS25).  The skull 3D shape (triangular mesh) of
 each patient was reconstructed from CT scans using Mimics (Materialise,
 Leuven) and further processed in Rhino3D (McNeel, WA) and Meshmixer
 (Autodesk, CA) to: 1)) create a reference plane through the nation, and
 the right and left external auditory meatus for consistency; 2) fill in
 skull defects and sutures, and obtain a smooth continuous surface; and 3)
 separate the inner surface of the skull bone from the outer
 surface. The outer skull surfaces were aligned and an
 average shape model was calculated for the population using statistical
 shape modelling, implemented in Deformetrica (www.deformetrica.org) (Durrleman et al., 2009). 
description: Any program able to read/process STL files (Meshmixer, Meshlab,
 etc.).
DOI: 10.5061/dryad.w3r2280vg
title: Vaccinating badgers in a post-cull landscape; insights from the field

description: In 2010 the BadgerBCG vaccine was licensed for use in badgers in the UK to
 reduce the severity of Mycobacterium bovis infection, and hence the risks
 of onward transmission to cattle. To date badger vaccination in the UK has
 been deployed at a relatively limited spatial scale (compared to the large
 scale badger culls) and almost exclusively in high density badger
 populations which have not been recently culled. UK Government policy
 direction has moved towards the wider roll-out of badger vaccination as an
 exit strategy following culling. Field resources required to carry out
 vaccination in undisturbed badger populations are well documented, but
 levels of effort are unlikely to be directly transferable to previously
 culled populations where badger density and social behaviour may be
 markedly different. We present an evidence based assessment of the likely
 effort required to vaccinate badger populations that have recently been
 culled, drawing on data from past culling operations, vaccination
 operations in a previously culled area and the practical field experiences
 of expert badger trappers. Trapping efficiency declined over successive
 years of industry-led culling, however this effect was not consistently
 noted in the government-run Randomised Badger Culling Trial (RBCT). Fewer
 badgers were removed using cage-trapping (compared to ‘controlled
 shooting’) in the latter years of intensive industry-led culls. When
 trapping badgers for vaccination in areas that had previously been culled,
 highly experienced government field staff adapted their practices in
 response to the lower density and likely more mobile residual population.
 A longer and more variable pre-baiting period was expected and there was a
 greater reliance on higher levels of skill and experience in interpreting
 field signs and trapping effectively in such populations.
description: Please see the README document and the accompanying published
 article (Benton et al., 2023 Vaccinating badgers in a post-cull landscape;
 insights from the field) along with the Supplementary Materials for full
 details of the methods of data collection and processing.
description: Data are stored as .csv files. All modeling in the publication
 was carried out in R v 4.0.2.
DOI: 10.5061/dryad.t76hdr84j
title: Coprophagy in moose

description: Coprophagy, the eating of feces, has been documented in a wide range of
 species but appears to be rare or difficult to detect in deer (Cervidae).
 Here, we report the first observation of coprophagy in moose Alces alces,
 which was recorded using camera collars on free-ranging moose in Norway.
 The footage shows an instance of allocoprophagy by an adult female moose
 in spring (May). We summarize the current knowledge about coprophagy in
 deer and briefly discuss potential drivers and possible implications for
 disease transmission. Further research is needed to determine if
 coprophagy occurs frequently in moose and whether this behavior is
 positive (e.g., increased intake of nutrients) or negative (increased
 infection by parasites or pathogens).
description: The video footage showing
 allocoprophagy in a female
 moose was recorded using a video collar (VERTEX Plus,
 Vectronic Aerospace GmbH, Germany) on
 20th of May, 2018 at 04:30 PM in the county of Trøndelag (N 63° 15.942’ E
 11° 51.273’).
description: Any software capable of playing mp4-video files (e.g., Windows
 Media Player, Quicktime Player, VLC Player),
DOI: 10.5061/dryad.zpc866tcj
title: Data from: Populating a continent: Phylogenomics reveal the timing of Australian frog diversification

description: The Australian continent’s size and isolation make it an ideal place for
 studying the accumulation and evolution of biodiversity. Long separated
 from the ancient supercontinent Gondwana, most of Australia’s plants and
 animals are unique and endemic, including the continent’s frogs.
 Australian frogs comprise a remarkable ecological and morphological
 diversity categorized into a small number of distantly related radiations.
 We present a phylogenomic hypothesis based on an exon-capture dataset that
 spans the main clades of Australian myobatrachoid, pelodryadid hyloid, and
 microhylid frogs. Our time-calibrated phylogenomic-scale phylogeny
 identifies great disparity in the relative ages of these groups which vary
 from Gondwanan relics to recent immigrants from Asia and include arguably
 the continent’s oldest living vertebrate radiation. This age
 stratification provides insight into the colonization of⁠, and
 diversification on, the Australian continent through deep time, during
 periods of dramatic climatic and community changes. Contemporary
 Australian frog diversity highlights the adaptive capacity of anurans,
 particularly in response to heat and aridity, and explains why they are
 one of the continent’s most visible faunas.
DOI: 10.17632/bk3f9s6cm8
title: Drugs associated with generalized non-allergic pruritus: A World Health Organization pharmacovigilance database analysis

description: Chronic pruritus without skin lesions may be related to medication use and can seriously affect quality of life. In this study, we analyzed 268,799 reports from VigiBase, the global pharmacovigilance database, to identify the drugs most frequently associated with generalized pruritus without skin lesions, excluding allergic, dermatological, and renal causes. The main classes of drugs involved were systemic antibiotics, vaccines, immunosuppressants, iodinated contrast agents, anticancer drugs, analgesics, and antivirals. Positive relapse cases also highlighted statins, anti-tuberculosis drugs, antacids, and certain anti-inflammatory agents. The study confirmed known associations and highlighted lesser-known triggers. These findings help clinicians evaluate and manage drug-induced pruritus.
DOI: 10.17632/bk3f9s6cm8.1
title: Drugs associated with generalized non-allergic pruritus: A World Health Organization pharmacovigilance database analysis

description: Chronic pruritus without skin lesions may be related to medication use and can seriously affect quality of life. In this study, we analyzed 268,799 reports from VigiBase, the global pharmacovigilance database, to identify the drugs most frequently associated with generalized pruritus without skin lesions, excluding allergic, dermatological, and renal causes. The main classes of drugs involved were systemic antibiotics, vaccines, immunosuppressants, iodinated contrast agents, anticancer drugs, analgesics, and antivirals. Positive relapse cases also highlighted statins, anti-tuberculosis drugs, antacids, and certain anti-inflammatory agents. The study confirmed known associations and highlighted lesser-known triggers. These findings help clinicians evaluate and manage drug-induced pruritus.
DOI: 10.5061/dryad.f7m0cfz1b
title: Context-dependent substitution matrices for coding regions of angiosperm cpDNA

description: The dataset contains 4x4 substitution matrices generated from fourfold
 degenerate sites within coding regions of flowering plant chloroplast DNA.
 Substitution data was generated from multiple sets of 3 taxa sequence
 comparisons, one taxon serving as the outgroup to root the substitution.
 There is one matrix for each of the possible 192 tetranucleotide contexts
 consisting of the two bases immediately flanking the substitution on the
 5' side and the two bases immediately flanking the substitution on
 the 3' side. These are count matrices but can be converted to Markov
 transition matrices. The analysis presented in the paper examines
 variation in substitution dynamics as a function of context.
description: Dataset was collected by recording substitutions within sequence
 data downloaded from NCBI. All aspects are described in the
 manuscript's Materials and Methods.
description: Text files.
DOI: 10.17632/sc7gf29s29
title: Employment situation of physiotherapy professionals

description: Database of the article “Employment situation of physiotherapy professionals in Imbabura Province, northern Ecuador.” The study aims to assess the employment situation of professionals in the field of physiotherapy in Imbabura Province, Ecuador. To this end, the sociodemographic characteristics, academic background, and employment status of these professionals