cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17110919
title: Additional file 1 of The effect of inbreeding, body size and morphology on health in dog breeds

description: Additional file 1: Dataset 1. Table of breeds, numbers of individuals, heterozygosity values, Fadj values, morbidity, group and morphology classifications.
DOI: 10.6084/m9.figshare.17110919.v1
title: Additional file 1 of The effect of inbreeding, body size and morphology on health in dog breeds

description: Additional file 1: Dataset 1. Table of breeds, numbers of individuals, heterozygosity values, Fadj values, morbidity, group and morphology classifications.
DOI: 10.6084/m9.figshare.17110922
title: Additional file 2 of The effect of inbreeding, body size and morphology on health in dog breeds

description: Additional file 2: Dataset 2. Breeds used for linear regression. Numbers of individuals, median, minimum and maximum inbreeding and median, minimum and maximum heterozygosity values are included.
DOI: 10.6084/m9.figshare.17110922.v1
title: Additional file 2 of The effect of inbreeding, body size and morphology on health in dog breeds

description: Additional file 2: Dataset 2. Breeds used for linear regression. Numbers of individuals, median, minimum and maximum inbreeding and median, minimum and maximum heterozygosity values are included.
DOI: 10.6084/m9.figshare.17110945
title: Additional file 1 of Daily rhythms in gene expression of the human parasite Schistosoma mansoni

description: Additional file 1: Supplementary tables 1-17. Table S1. All genes expressed in female Schistosoma mansoni samples over the two 24 hour periods including those with ~ 24 hr rhythmicity. Table S2. All genes expressed in male Schistosoma mansoni samples over the two 24 hour periods including those with ~ 24 hr rhythmicity. Table S3. All genes expressed in male head samples of Schistosoma mansoni over the two 24 hour periods including those with ~ 24 hr rhythmicity. Table S4. - Genes with differential expression over the two 24 hour periods in female Schistosoma mansoni samples including those with ~ 24 hr rhythmicity. Table S5. - Genes with differential expression over the two 24 hour periods in male Schistosoma mansoni samples including those with ~ 24 hr rhythmicity. Table S6. - Genes with differential expression over the two 24 hour periods in male head samples of Schistosoma mansoni including those with ~ 24 hr rhythmicity. Table S7. - Diel genes from the three datasets (i.e. all genes that are differentially expressed over 24 hours plus cycling with ~ 24 hr periodicity). Table S8. - Orthologs of Schistosoma mansoni diel genes. Table S9. - GO terms enriched in diel genes. Table S10. - Schistosoma mansoni adult cell types enriched in diel genes. Table S11. Diel genes involved in KEGG pathways. Table S12. Enrichment of Pfam families, InterPro domains, and KEGG pathways with diel genes. Table S13. Putative Schistosoma mansoni core and secondary circadian clock proteins. Table S14. Domain identifiers for main clock proteins were used to query WormBaseParaSite against the Schistosoma mansoni genome to identify putative orthologues. Table S15. -Animal circadian clock genes used in BLASTP searches and phylogenetic analyses to identify orthologues in Schistosoma mansoni. Table S16. One-to-one orthologs that show ~ 24 hr periodicity in Schistosoma mansoni and three other Metazoa; Drosophila melanogaster, Mus musculus and Cellana rota. Table S17. Diel genes with predicted drug inhibitors.
DOI: 10.6084/m9.figshare.17110945.v1
title: Additional file 1 of Daily rhythms in gene expression of the human parasite Schistosoma mansoni

description: Additional file 1: Supplementary tables 1-17. Table S1. All genes expressed in female Schistosoma mansoni samples over the two 24 hour periods including those with ~ 24 hr rhythmicity. Table S2. All genes expressed in male Schistosoma mansoni samples over the two 24 hour periods including those with ~ 24 hr rhythmicity. Table S3. All genes expressed in male head samples of Schistosoma mansoni over the two 24 hour periods including those with ~ 24 hr rhythmicity. Table S4. - Genes with differential expression over the two 24 hour periods in female Schistosoma mansoni samples including those with ~ 24 hr rhythmicity. Table S5. - Genes with differential expression over the two 24 hour periods in male Schistosoma mansoni samples including those with ~ 24 hr rhythmicity. Table S6. - Genes with differential expression over the two 24 hour periods in male head samples of Schistosoma mansoni including those with ~ 24 hr rhythmicity. Table S7. - Diel genes from the three datasets (i.e. all genes that are differentially expressed over 24 hours plus cycling with ~ 24 hr periodicity). Table S8. - Orthologs of Schistosoma mansoni diel genes. Table S9. - GO terms enriched in diel genes. Table S10. - Schistosoma mansoni adult cell types enriched in diel genes. Table S11. Diel genes involved in KEGG pathways. Table S12. Enrichment of Pfam families, InterPro domains, and KEGG pathways with diel genes. Table S13. Putative Schistosoma mansoni core and secondary circadian clock proteins. Table S14. Domain identifiers for main clock proteins were used to query WormBaseParaSite against the Schistosoma mansoni genome to identify putative orthologues. Table S15. -Animal circadian clock genes used in BLASTP searches and phylogenetic analyses to identify orthologues in Schistosoma mansoni. Table S16. One-to-one orthologs that show ~ 24 hr periodicity in Schistosoma mansoni and three other Metazoa; Drosophila melanogaster, Mus musculus and Cellana rota. Table S17. Diel genes with predicted drug inhibitors.
DOI: 10.6084/m9.figshare.17110961
title: Supplementary Material for: Can the Dynamic Colouration and Patterning of Bluelined Goatfish (Mullidae; <b><i>Upeneichthys lineatus</i></b>) Be Perceived by Conspecifics?

description: Bluelined goatfish (<i>Upeneichthys lineatus</i>) exhibit dynamic body colour changes and transform rapidly from a pale, buff/white, horizontally banded pattern to a conspicuous, vertically striped, red pattern when foraging. This red pattern is potentially an important foraging signal for communication with conspecifics, provided that <i>U. lineatus</i> can detect and discriminate the pattern. Using both physiological and behavioural experiments, we first examined whether <i>U. lineatus</i> possess visual pigments with sensitivity to long (“red”) wavelengths of light, and whether they can discriminate the colour red. Microspectrophotometric measurements of retinal photoreceptors showed that while <i>U. lineatus</i>lack visual pigments dedicated to the red part of the spectrum, their pigments likely confer some sensitivity in this spectral band. Behavioural colour discrimination experiments suggested that <i>U. lineatus</i>can distinguish a red reward stimulus from a grey distractor stimulus of variable brightness. Furthermore, when presented with red stimuli of varying brightness they could mostly discriminate the darker and lighter reds from the grey distractor. We also obtained anatomical estimates of visual acuity, which suggest that <i>U. lineatus</i> can resolve the contrasting bands of conspecifics approximately 7 m away in clear waters. Finally, we measured the spectral reflectance of the red and white colouration on the goatfish body. Visual models suggest that <i>U. lineatus</i> can discriminate both chromatic and achromatic differences in body colouration where longer wavelength light is available. This study demonstrates that <i>U. lineatus</i> have the capacity for colour vision and can likely discriminate colours in the long-wavelength region of the spectrum where the red body pattern reflects light strongly. The ability to see red may therefore provide an advantage in recognising visual signals from conspecifics. This research furthers our understanding of how visual signals have co-evolved with visual abilities, and the role of visual communication in the marine environment.
DOI: 10.6084/m9.figshare.17110961.v1
title: Supplementary Material for: Can the Dynamic Colouration and Patterning of Bluelined Goatfish (Mullidae; <b><i>Upeneichthys lineatus</i></b>) Be Perceived by Conspecifics?

description: Bluelined goatfish (<i>Upeneichthys lineatus</i>) exhibit dynamic body colour changes and transform rapidly from a pale, buff/white, horizontally banded pattern to a conspicuous, vertically striped, red pattern when foraging. This red pattern is potentially an important foraging signal for communication with conspecifics, provided that <i>U. lineatus</i> can detect and discriminate the pattern. Using both physiological and behavioural experiments, we first examined whether <i>U. lineatus</i> possess visual pigments with sensitivity to long (“red”) wavelengths of light, and whether they can discriminate the colour red. Microspectrophotometric measurements of retinal photoreceptors showed that while <i>U. lineatus</i>lack visual pigments dedicated to the red part of the spectrum, their pigments likely confer some sensitivity in this spectral band. Behavioural colour discrimination experiments suggested that <i>U. lineatus</i>can distinguish a red reward stimulus from a grey distractor stimulus of variable brightness. Furthermore, when presented with red stimuli of varying brightness they could mostly discriminate the darker and lighter reds from the grey distractor. We also obtained anatomical estimates of visual acuity, which suggest that <i>U. lineatus</i> can resolve the contrasting bands of conspecifics approximately 7 m away in clear waters. Finally, we measured the spectral reflectance of the red and white colouration on the goatfish body. Visual models suggest that <i>U. lineatus</i> can discriminate both chromatic and achromatic differences in body colouration where longer wavelength light is available. This study demonstrates that <i>U. lineatus</i> have the capacity for colour vision and can likely discriminate colours in the long-wavelength region of the spectrum where the red body pattern reflects light strongly. The ability to see red may therefore provide an advantage in recognising visual signals from conspecifics. This research furthers our understanding of how visual signals have co-evolved with visual abilities, and the role of visual communication in the marine environment.
DOI: 10.34808/9g3e-r789
title: Ultrasonic wave propagation, digital image correlation and X-ray micro-computed tomography measurements of concrete during splitting (cube #3)

description: The DataSet contains the results of the mechanical behaviour of a concrete cube under the splitting test. The cube had dimensions 70 x 70 x 70 cm3 and was made of concrete with the following ingredients: cement type CEM I 42.5R (330 kg/m3), water (165 kg/m3), aggregate 0/2 mm (710 kg/m3), aggregate 2/8 mm (664 kg/m3), aggregate 8/16 mm (500 kg/m3), and super-plasticizer (0.7% of cement content). The splitting test was performed using a Zwick/Roell Z10 universal testing machine (UTM). The parameters of the test were: a preload of 20 N, a constant mid-span displacement increment of 0.1 mm/min. The tests were stopped after 900 s.
During the splitting test, integrated ultrasonic testing (UT) and digital image correlation (DIC) measurements were carried out. Photographs of the front surface of the cube were taken every 2 s by ARAMIS MC 2D 12M. Wave propagation signals were registered every 2 s with a sampling frequency of 8 MHz by a digital oscilloscope PicoScope 4824. The excitation was a five-cycle wave packet with a central frequency of 500 kHz. After splitting, micro-computed tomography (uCT) measurements were performed using SkyScan 1173 scanner.  The experimental analysis was performed on four cubes (denoted as cubes #1–#4) made of the same concrete. The dataset consists of wave propagation signals and images for cube #3.
The photographs (.tif) presenting the front surface of the cube were taken every 2 s. The UT files utilize a comma-separated values (.csv) format and contain wave propagation signals of a length of 5 ms, recorded every 2 s. In a single file, the time vector (in ms) and the signals from channels A (in V), B (in V) and C (in V) can be found. The UTM file has (.txt) extension and contains the time of the test (in s, 2nd column), force (in N, 3rd column) and displacement of traverse (in mm, 4th column). The reconstructed images from X-ray micro-computed tomograph are in (.bmp) files.
DOI: 10.34808/8rw8-tj96
title: Ultrasonic wave propagation, digital image correlation and X-ray micro-computed tomography measurements of concrete during splitting (cube #1)

description: The DataSet contains the results of the mechanical behaviour of a concrete cube under the splitting test. The cube had dimensions 70 x 70 x 70 cm3 and was made of concrete with the following ingredients: cement type CEM I 42.5R (330 kg/m3), water (165 kg/m3), aggregate 0/2 mm (710 kg/m3), aggregate 2/8 mm (664 kg/m3), aggregate 8/16 mm (500 kg/m3), and super-plasticizer (0.7% of cement content). The splitting test was performed using a Zwick/Roell Z10 universal testing machine (UTM). The parameters of the test were: a preload of 20 N, a constant mid-span displacement increment of 0.1 mm/min. The tests were stopped after 900 s.
During the splitting test, integrated ultrasonic testing (UT) and digital image correlation (DIC) measurements were carried out. Photographs of the front surface of the cube were taken every 2 s by ARAMIS MC 2D 12M. Wave propagation signals were registered every 2 s with a sampling frequency of 8 MHz by a digital oscilloscope PicoScope 4824. The excitation was a five-cycle wave packet with a central frequency of 500 kHz. After splitting, micro-computed tomography (uCT) measurements were performed using SkyScan 1173 scanner.  The experimental analysis was performed on four cubes (denoted as cubes #1–#4) made of the same concrete. The dataset consists of wave propagation signals and images for cube #1.
The photographs (.tif) presenting the front surface of the cube were taken every 2 s. The UT files utilize a comma-separated values (.csv) format and contain wave propagation signals of a length of 5 ms, recorded every 2 s. In a single file, the time vector (in ms) and the signals from channels A (in V), B (in V) and C (in V) can be found. The UTM file has (.txt) extension and contains the time of the test (in s, 2nd column), force (in N, 3rd column) and displacement of traverse (in mm, 4th column). The reconstructed images from X-ray micro-computed tomograph are in (.bmp) files.
DOI: 10.34808/7jdh-wv39
title: Ultrasonic wave propagation, digital image correlation and X-ray micro-computed tomography measurements of concrete during splitting (cube #4)

description: The DataSet contains the results of the mechanical behaviour of a concrete cube under the splitting test. The cube had dimensions 70 x 70 x 70 cm3 and was made of concrete with the following ingredients: cement type CEM I 42.5R (330 kg/m3), water (165 kg/m3), aggregate 0/2 mm (710 kg/m3), aggregate 2/8 mm (664 kg/m3), aggregate 8/16 mm (500 kg/m3), and super-plasticizer (0.7% of cement content). The splitting test was performed using a Zwick/Roell Z10 universal testing machine (UTM). The parameters of the test were: a preload of 20 N, a constant mid-span displacement increment of 0.1 mm/min. The tests were stopped after 900 s.
During the splitting test, integrated ultrasonic testing (UT) and digital image correlation (DIC) measurements were carried out. Photographs of the front surface of the cube were taken every 2 s by ARAMIS MC 2D 12M. Wave propagation signals were registered every 2 s with a sampling frequency of 8 MHz by a digital oscilloscope PicoScope 4824. The excitation was a five-cycle wave packet with a central frequency of 500 kHz. After splitting, micro-computed tomography (uCT) measurements were performed using SkyScan 1173 scanner.  The experimental analysis was performed on four cubes (denoted as cubes #1–#4) made of the same concrete. The dataset consists of wave propagation signals and images for cube #4.
The photographs (.tif) presenting the front surface of the cube were taken every 2 s. The UT files utilize a comma-separated values (.csv) format and contain wave propagation signals of a length of 5 ms, recorded every 2 s. In a single file, the time vector (in ms) and the signals from channels A (in V), B (in V) and C (in V) can be found. The UTM file has (.txt) extension and contains the time of the test (in s, 2nd column), force (in N, 3rd column) and displacement of traverse (in mm, 4th column). The reconstructed images from X-ray micro-computed tomograph are in (.bmp) files.
DOI: 10.34808/04mv-e820
title: Ultrasonic wave propagation, digital image correlation and X-ray micro-computed tomography measurements of concrete during splitting (cube #2)

description: The DataSet contains the results of the mechanical behaviour of a concrete cube under the splitting test. The cube had dimensions 70 x 70 x 70 cm3 and was made of concrete with the following ingredients: cement type CEM I 42.5R (330 kg/m3), water (165 kg/m3), aggregate 0/2 mm (710 kg/m3), aggregate 2/8 mm (664 kg/m3), aggregate 8/16 mm (500 kg/m3), and super-plasticizer (0.7% of cement content). The splitting test was performed using a Zwick/Roell Z10 universal testing machine (UTM). The parameters of the test were: a preload of 20 N, a constant mid-span displacement increment of 0.1 mm/min. The tests were stopped after 900 s.
During the splitting test, integrated ultrasonic testing (UT) and digital image correlation (DIC) measurements were carried out. Photographs of the front surface of the cube were taken every 2 s by ARAMIS MC 2D 12M. Wave propagation signals were registered every 2 s with a sampling frequency of 8 MHz by a digital oscilloscope PicoScope 4824. The excitation was a five-cycle wave packet with a central frequency of 500 kHz. After splitting, micro-computed tomography (uCT) measurements were performed using SkyScan 1173 scanner.  The experimental analysis was performed on four cubes (denoted as cubes #1–#4) made of the same concrete. The dataset consists of wave propagation signals and images for cube #2.
The photographs (.tif) presenting the front surface of the cube were taken every 2 s. The UT files utilize a comma-separated values (.csv) format and contain wave propagation signals of a length of 5 ms, recorded every 2 s. In a single file, the time vector (in ms) and the signals from channels A (in V), B (in V) and C (in V) can be found. The UTM file has (.txt) extension and contains the time of the test (in s, 2nd column), force (in N, 3rd column) and displacement of traverse (in mm, 4th column). The reconstructed images from X-ray micro-computed tomograph are in (.bmp) files.
DOI: 10.14457/cu.the.2013.1976
title: Data-throwaway learning for streaming chunk data classification by applying a versatile elliptic basis function (vebf) to single-class-wise computation
DOI: 10.5281/zenodo.5717555
title: Data for the article entitled "Strongly Coupled Data Assimilation of Ocean Observations into an Ocean-Atmosphere Model" by Tang et al. 2021, GRL

description: We stored the output data for the free run and the data assimilation experiments. All the data is stored in netCDF format and named by XX1_ensmean_XX2_monmean.nc. The prefix XX1 indicates the simulation scenarios, where 'free_run' refers to the free run, 'wcda' the weakly coupled assimilation run, 'scda' the strongly coupled data assimilation run without vertical localization for atmosphere, and 'scda_vert' the strongly coupled assimilation run with vertical localization for atmosphere. The XX2 represents variables from the simulations, where 'temp2' refers to 2 meter temperature, 'u10' 10 metre U wind component, 'v10' 10 metre V wind component, 'st_p' temperature at pressure levels, 'uv_p' U and V component of wind at pressure levels, and 'q_p' specific humidity at pressure levels.
DOI: 10.5281/zenodo.5717554
title: Data for the article entitled "Strongly Coupled Data Assimilation of Ocean Observations into an Ocean-Atmosphere Model" by Tang et al. 2021, GRL

description: We stored the output data for the free run and the data assimilation experiments. All the data is stored in netCDF format and named by XX1_ensmean_XX2_monmean.nc. The prefix XX1 indicates the simulation scenarios, where 'free_run' refers to the free run, 'wcda' the weakly coupled assimilation run, 'scda' the strongly coupled data assimilation run without vertical localization for atmosphere, and 'scda_vert' the strongly coupled assimilation run with vertical localization for atmosphere. The XX2 represents variables from the simulations, where 'temp2' refers to 2 meter temperature, 'u10' 10 metre U wind component, 'v10' 10 metre V wind component, 'st_p' temperature at pressure levels, 'uv_p' U and V component of wind at pressure levels, and 'q_p' specific humidity at pressure levels.
DOI: 10.5281/zenodo.5748662
title: apomixis_parallel_evolution, and Fortunella hindsii (Citrus hindsii )Genome sequencing and assembly

description: ##The assemble(genome) files Citrus hindsii (Mini citrus)Genome assembly Citrus hindsii (Mini citrus)Genome assembly gene model gff3 file Citrus hindsii (Mini citrus)Genome assembly function annotation Citrus hindsii (Mini citrus)Genome assembly TE gff3 file ##The population dataset LD_pur.vcf.gz //The LD purning SNP vcfs (1.4 M sites) used in analysis <br> log10_auxin.txt //The expression (log10) related to auxin pathway <br> sjg.temergedref.fasta.gz //The TE insertion modify genome in popTE2 analysis <br> SVs.vcf.gz //The SV vcfs used in the paper <br> te-hierarchy.txt //The TE classfication in popTE2 analysis <br> TPM_count.txt //All samples expression in TMP count <br> unfiltered.vcf.gz //The unfiltered vcfs file (7.3 M sites, within 0.4 M indels)
DOI: 10.5281/zenodo.5081304
title: apomixis_parallel_evolution, and Fortunella hindsii (Citrus hindsii )Genome sequencing and assembly

description: ##The assemble(genome) files Citrus hindsii (Mini citrus)Genome assembly Citrus hindsii (Mini citrus)Genome assembly gene model gff3 file Citrus hindsii (Mini citrus)Genome assembly function annotation Citrus hindsii (Mini citrus)Genome assembly TE gff3 file ##The population dataset LD_pur.vcf.gz //The LD purning SNP vcfs (1.4 M sites) used in analysis <br> log10_auxin.txt //The expression (log10) related to auxin pathway <br> sjg.temergedref.fasta.gz //The TE insertion modify genome in popTE2 analysis <br> SVs.vcf.gz //The SV vcfs used in the paper <br> te-hierarchy.txt //The TE classfication in popTE2 analysis <br> TPM_count.txt //All samples expression in TMP count <br> unfiltered.vcf.gz //The unfiltered vcfs file (7.3 M sites, within 0.4 M indels)
DOI: 10.5281/zenodo.5748041
title: Spin-voltage-driven efficient terahertz spin currents from the magnetic Weyl semimetals Co2MnGa and Co2MnAl

description: We study ultrafast optically driven spin injection from thin films of the magnetic Weyl semimetals Co<sub>2</sub>MnGa and Co<sub>2</sub>MnAl into an adjacent Pt layer by means of terahertz emission spectroscopy. The following datasets are provided: THz waveforms, THz emission-signal amplitudes (rms) vs pump power, scaled THz signals as a figure of merit in terms of spin-injection efficiency, corresponding broadband spectra and extracted spin currents.
description: We acknowledge funding by the German Research Foundation through the collaborative research center SFB TRR 227 "Ultrafast spin dynamics" (projects A05 and B02).
DOI: 10.5281/zenodo.5748040
title: Spin-voltage-driven efficient terahertz spin currents from the magnetic Weyl semimetals Co2MnGa and Co2MnAl

description: We study ultrafast optically driven spin injection from thin films of the magnetic Weyl semimetals Co<sub>2</sub>MnGa and Co<sub>2</sub>MnAl into an adjacent Pt layer by means of terahertz emission spectroscopy. The following datasets are provided: THz waveforms, THz emission-signal amplitudes (rms) vs pump power, scaled THz signals as a figure of merit in terms of spin-injection efficiency, corresponding broadband spectra and extracted spin currents.
description: We acknowledge funding by the German Research Foundation through the collaborative research center SFB TRR 227 "Ultrafast spin dynamics" (projects A05 and B02).