cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.sewjmu
title: Occurrence Download

description: A dataset containing 55595 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sturnus vulgaris",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 55595 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018056-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15923402
title: NMR_test_files
DOI: 10.5281/zenodo.15923692
title: NMR_test_files
DOI: 10.15468/dl.wb9smn
title: Occurrence Download

description: A dataset containing 5201203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Artportalen",
 "Geometry POLYGON((23.05805 65.86972,23.05805 66.03197,22.22859 65.99825,21.4489 65.67229,20.81852 64.84617,21.38255 64.48415,16.72728 62.47048,17.03923 60.62511,18.53899 59.87558,17.82463 59.30092,15.97467 58.66515,16.10629 56.95878,16.10629 56.95878,15.78303 56.29078,14.49418 56.32991,14.10879 55.90196,14.11712 55.48358,13.1032 55.44953,13.1503 55.71827,12.79367 56.1158,13.00212 56.47587,12.86631 56.73747,12.06813 57.6683,11.28617 59.57978,10.03589 59.91788,9.26117 56.80965,11.19077 55.23815,13.20216 53.48063,18.7374 53.89532,21.4415 54.70265,21.22648 56.38695,23.64168 59.9515,21.69147 60.74632,21.91308 62.66617,25.04874 64.68351,25.71231 65.40439,24.66719 65.89005,23.05805 65.86972))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Magnoliopsida"
 ]
}

 The dataset includes 5201203 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018079-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbdtzt
title: Occurrence Download

description: A dataset containing 1245 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "TaxonKey is Saururus chinensis"
 ]
}

 The dataset includes 1245 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018093-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12478287
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.se2dk4
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bromus sterilis pilosus, Bromus sterilis arrectus, Bromus sterilis glabrescens, Bromus sterilis hirtiflorus, Bromus sterilis humilis, Bromus sterilis intermedius, Bromus sterilis jubatus, Bromus sterilis lanuginosus, Bromus sterilis oligostachyus, Bromus sterilis pubescens)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018094-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7jm3fn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Contopus sordidulus)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018095-250711103210423/datasets/export for details.
DOI: 10.15468/dl.sm6ddu
title: Occurrence Download

description: A dataset containing 99368 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Typha angustifolia, Typha angustifolia, Typha angustifolia, Typha angustifolia, Typha angustifolia, Typha angustifolia, Typha angustifolia, Typha angustifolia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 99368 records from 1095 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018078-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5pyhtc
title: Occurrence Download

description: A dataset containing 32127321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "Country is Germany",
 "HasCoordinate is true"
 ]
}

 The dataset includes 32127321 records from 1316 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018057-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.1348830_d3
title: TEX86 Database Metadata File

description: This metadata file describes the variables in the TEX86 database and provides the associated references.
DOI: 10.6084/m9.figshare.25001867.v1
title: Supplementary Material for: Amide proton transfer-weighted magnetic resonance imaging for application in renal fibrosis: A radiological-pathological based analysis

description: Background. Renal fibrosis (RF) being the most important pathological change in the progression of CKD, is currently assessed by the evaluation of a biopsy. This present study aimed to apply a novel functional MRI (fMRI) protocol named amide proton transfer weighting (APTw) to evaluate RF non-invasively.
Methods. Male Sprague-Dawley (SD) rats were initially subjected to bilateral kidney ischemia/reperfusion injury (IRI), unilateral ureteral obstruction (UUO) and Sham operation, respectively. All rats underwent APT mapping on the 7th and the 14th day after operation. Besides, 26 patients undergoing renal biopsy at the Nephrology Department of Shanghai Tongji Hospital between July 2022 and May 2023. Patients underwent APT and apparent diffusion coefficient (ADC) mappings within 1 week before biopsy. MRI results of both patients and rats were calculated by comparing with gold standard histology for fibrosis assessment.
Results. In animal models, the cortical APT (cAPT) and medullary APT (mAPT) values were positively correlated with the degree of renal fibrosis. Compared to the sham group, IRI group showed significantly increased cAPT and mAPT values on the 7th and 14th day after surgery, but no group differences were found in ADC values. Similar results were found in human patients. Cortical/medullary APT values were significantly increased in patients with moderate-to-severe fibrosis than patients with mild fibrosis. ROC curve analysis indicated that APT value displayed a better diagnostic value for RF. Furthermore, combination of cADC and cAPT improved fibrosis detection by imaging variables alone (p&lt;0.1).
Conclusion. APT values had better diagnostic capability at early stage of RF compared to ADC values, and the addition of APT imaging to conventional ADC will significantly improve the diagnostic performance for predicting kidney fibrosis.
DOI: 10.6084/m9.figshare.23567103.v1
title: 273 document results Organizational Resilience.csv

description: The dataset contains 273 document list mentioning "organizational resilience" in iether title, keyword, or abstract. The dataset is specific on business and economics fields only.
DOI: 10.6084/m9.figshare.21121471.v1
title: ecitophya_simulans_zanfona_1.fasta.gz

description: .....
DOI: 10.6084/m9.figshare.28826516.v1
title: Supplementary Materials for:<b>A preliminary assessment of the biodiversity of inner-coastal zooplankton of southwestern Puerto Rico using a DNA metabarcoding approach</b>

description: Abstract— Zooplankton communities are fundamental to marine food webs and ecosystem functioning, yet their biodiversity in tropical regions like Puerto Rico remains understudied. It is crucial to understand the zooplankton biodiversity given the current risks posed by climate change and anthropogenic pressures. This study provides the first metabarcoding assessment of zooplankton diversity in La Parguera, southwestern Puerto Rico, combining CO1 metabarcoding with traditional microscopy to offer a comprehensive overview. Zooplankton samples were collected during autumn and winter (2019–2020), across diel cycles and using three mesh sizes (63 µm, 202 µm, 500 µm). Microscopy results confirmed the dominance of calanoid copepods, particularly <i>Paracalanus</i> and <i>Acartia</i> spp., consistent with previous studies. In contrast, metabarcoding revealed a more diverse community than the microscopy methods, with high relative abundance of meroplanktonic mollusks (e.g., Caenogastropoda) and arthropod larvae (e.g., <i>Mithrax hispidus</i>), likely due to primer biases and enhanced detection of larval stages. The CO1 dataset enabled the detection of cryptic taxa (e.g., <i>Aglaophenia latecarinata</i>) using a customized bioinformatics pipeline. Permutational Multivariate Analysis of Variance (PERMANOVA) detected no significant differences in community composition across diel, seasonal, or mesh-size gradients, suggesting short-term stability. This work establishes a critical baseline for zooplankton research in Puerto Rico after two decades of limited study, highlighting the value of integrative approaches to monitor biodiversity shifts in vulnerable tropical ecosystems.<br><br>Here are the supplementary materials for this research, mostly focusing on the DNA metabarcoding pipeline for the bioinformatics portion of the research (Appendix A) and data obtained from it (Appendix B and Appendix C).
DOI: 10.4121/12960104.v1
title: Cascaded Tanks Benchmark Combining Soft and Hard Nonlinearities

description: The considered cascaded tanks system is a fluid level control system consisting of two tanks with free outlets fed by a pump. The input signal controls a water pump that delivers the water from a reservoir into the upper water tank. The water of the upper tank flows through a small opening into the lower tank, and finally through a small opening from the lower tank back into the reservoir. This benchmark combines soft and hard nonlinearities to be identified based on relatively short data records.<br>All the provided files and information on the cascaded tanks system are available for download here. The zip-file contains a detailed system description, the estimation and test input-output time series data sets, and some pictures and a video of the setup. The data is available in the .csv and .mat file format.<br>
DOI: 10.6084/m9.figshare.20347860.v2
title: Molecular characterization and complete genome analysis of highly pathogenic avian influenza virus H5N1 isolated from live bird markets of East Java Indonesia

description: <strong>Background</strong> The highly pathogenic H5N1 avian influenza virus continues to be dangerous to both animal and human health because it can infect a wide range of animals. H5N1 virus comes in a variety of genotypes, but only a small number of them are known to infect mammals. The molecular characterization of viral subtypes in animal populations is indispensable for comprehending the distribution of different viral subtypes in a variety of hosts. <strong>Materials and Methods</strong> The influenza isolate was obtained from a tracheal sample of healthy poultry from live bird markets of East Java Province from March 2021 to April 2022. HA and HI were used for screening and qRT-PCR were used for amplification. Sequencing was done and a genomic sequence was obtained from the GISAID database. MEGA-11 software was used to understand the transformations in the isolate. <strong>Results</strong> A/chicken/East Java/Av1955/2022 contain multiple basic amino acids (PQRE RRRKR /GLF) at the cleavage site in the HA gene that showed the characteristics of HPAIV. All the segments (PB2, PB1, PA, HA, NP, NA, NP, and M) of the study isolate revealed mutations in nucleotides and amino acid sequence and depicted a phylogenetically close relationship to isolates of A/ turkey/East Java/Av154, Malaysia, Thailand, and Japan. Study isolate showed reassortment from the reference virus in all gene segments which was the indication of newly emerging strains of H5N1 in the study area. <strong>Conclusion</strong> The findings of the current study depicted that the mutations in nucleotides and amino acid sequence might be the cause of newly emerging subtypes in the study area. These mutations could potentially make the virus more pathogenic in chickens and ducks.
DOI: 10.6084/m9.figshare.20804476.v1
title: Time from incident malaria infection to gametocyte initiation or malaria clearance under double-interval-censoring and competing risks

description: This dataset is the example data used for the paper by Ramjith et al. (2022) in which they describe flexible time-to-event models for double-interval-censored data with a competing risks. The survival times are thus specified by two intervals (L0time, R0time] and (L1time, R1time]. There is a state indicator for right-censoring (state=1), gametocyte initiation (state=2) and malaria clearance (state=3). There is also a special overlap indicator to indicate whether gametocytes were detected at the moment of detection of parasites. All covariates analyzed are included here; from host characteristics to parasite characteristics.
DOI: 10.6084/m9.figshare.7359011.v1
title: A numerical tool to evaluate highly focused holographic optical needles

description: A numerical tool to evaluate highly focused holographic optical needles.<br>
DOI: 10.6084/m9.figshare.11662368.v1
title: Data and supplementary information for "Meteorological data for Nagata, Yakushima Island, Japan, during 2005–2014"

description: Data and supplementary information for "Meteorological data for Nagata, Yakushima Island, Japan, during 2005–2014". See <b>README.txt</b> for the details.
DOI: 10.6084/m9.figshare.23652543.v1
title: Ferr calculos.xlsx

description: Haematological and biochemical data of lean/normalweight and overweight/obese dogs.
DOI: 10.6084/m9.figshare.24316432.v1
title: Psychedelic use and psychiatric risks: data and code

description: Psychedelic use and psychiatric risks: data and code
DOI: 10.6084/m9.figshare.28428461.v1
title: Raw data of our research entitled "<b><i>Factors Affecting the Actual Use and Loyalty in Relation to Acquiring Membership Cards: An Integration of Funnel Model and UTAUT2</i></b>"

description: Raw data of our research entitled "<b><i>Factors Affecting the Actual Use and Loyalty in Relation to Acquiring Membership Cards: An Integration of Funnel Model and UTAUT2</i></b>"
DOI: 10.6084/m9.figshare.25517482.v1
title: Taxonomic Classification Data for Benthic Macroinvertebrates

description: Taxonomic classifications for benthic macroinvertebrate genera up to the phylum level and the name of the cluster (applicable only if genus is the member of a 'lumped' group).
DOI: 10.6084/m9.figshare.12458225.v1
title: MOTU data. The Degree of Safety Against Falls Provided by Four Different Prosthetic Knee Types in People With Transfemoral Amputation: A Retrospective Observational Study

description: Data underling the findings of the article "The Degree of Safety Against Falls Provided by Four Different Prosthetic Knee Types in People With Transfemoral Amputation: A Retrospective Observational Study".<br><br>All dates have been shifted so that the first admission date for each patient is on 1st January 2011.<br>This work has been conducted within the framework of the MOTU project (https://www.repair-lab.it/en/motu-2/).<br>
DOI: 10.6084/m9.figshare.14558154.v3
title: Data from: 3D Echo Planar Time-resolved Imaging (3D-EPTI) for ultrafast multi-parametric quantitative MRI

description: Example datasets for multi-parametric brain MRI using 3D-EPTI. 3D-EPTI is a new technique that can provide ultra-fast quantitative imaging with high quality and spatial resolution. Here, we provide simultaneously obtained whole-brain T1, T2, T2*, PD and B1+ maps using three different protocols at three spatial resolution: 1.5 mm, 1 mm and 0.7 mm acquired in 1 min, 3 mins and 9 mins respectively.
DOI: 10.6084/m9.figshare.3522104.v1
title: Appendix A. Species of marsupials used in the analyses, and their associated life history traits and ecological variables.

description: Species of marsupials used in the analyses, and their associated life history traits and ecological variables.
DOI: 10.4121/12993911.v1
title: Data underlying the research on: Al 2024-T3 center crack tension constant amplitude fatigue tests with potential drop through the cycle measurements

description: Al 2024-T3 center crack tension constant amplitude fatigue tests, data from potential drop measurements. The objective was to obtain the potential behavior throughout fatigue cycles, in order to observe relationships between fatigue crack growth effects such as crack tip plasticity and crack extension.
DOI: 10.6084/m9.figshare.27907035.v2
title: CVD

description: Cities Viral Dataset (CVD)
DOI: 10.6084/m9.figshare.24347044.v1
title: Supplementary Material for: The detrimental effect of pre-treatment with ivermectin on myocardial ischemia

description: Purpose: Ivermectin is a broad-spectrum anti-parasitic agent with potential antibacterial, antiviral and anti-cancer effects. There are limited studies on the effects of ivermectin on cardiovascular diseases, so the present study sought to determine the effects of pre-treatment with ivermectin on myocardial ischemia in both ex vivo and in vivo. Methods: In the ex vivo part, two groups of control and treated rats with ivermectin (0.2 mg/kg) were examined for cardiac function and arrhythmias by isolated heart perfusion. In the in vivo part, four groups of: control, ivermectin (IVM), Iso (MI), and Iso + IVM 0.2 mg/kg were used. Subcutaneous injection of isoproterenol (100 mg/kg/day) for 2 consecutive days was used for the induction of myocardial infarction in male Wistar rats. Then electrocardiogram, hemodynamic factors, cardiac hypertrophy, and malondialdehyde levels were investigated. Results: The ex vivo results showed that administration of ivermectin induces cardiac arrhythmia and decreases the left ventricular maximal rate of pressure increase (contractility) and maximal rate of pressure decline (relaxation). The isoproterenol-induced myocardial infarction model used as an in vivo model showed that cardiac hypertrophy were increased with no improvement in the hemodynamic and electrocardiogram pattern in the ivermectin-treated group in comparison to MI (Iso) group. However, the malondialdehyde level was lower in the ivermectin-treated group. Conclusion: Ivermectin pre-treatment demonstrates detrimental effects in cardiac ischemia through exacerbation of cardiac arrhythmia, myocardial dysfunction, and increased cardiac hypertrophy. Therefore, the use of ivermectin in ischemic heart patients should be done with great caution.
DOI: 10.6084/m9.figshare.28377143
title: The original FASTA sequences, alignment matrices, and all resulting phylogenetic tree files used in mito-APG analysis

description: Resolving the phylogenetic relationships among the five major angiosperm lineages remains challenging, with large-scale nuclear and plastid datasets often yielding conflicting topologies. We successfully assembled the first complete mitochondrial genomes for two of the five major lineages within core angiosperm—Ceratophyllales (Ceratophyllum) and Chloranthales (Chloranthus)—and comprehensively assessed the utility of mitochondrial genome in resolving deep angiosperm phylogeny. Through analyses of multiple mitochondrial and plastid datasets using diverse phylogenetic methods, we found consistent support for two important relationships despite overall topological discordance between genomic compartments: (1) all mitochondrial datasets recovered Ceratophyllum + Chloranthus as a monophyletic clade with strong support, and (2) protein-based analyses from both mitochondrial and plastid genomes, along with approximately half of all mitochondrial trees, supported monocots and eudicots as sister groups. We demonstrate that topological instability often observed in mitochondrial phylogenies can be effectively mitigated through RNA editing adjustment strategies (C-to-U edit or delete), which significantly increased tree consistency across inference methods. However, substantial gene tree conflict persisted, particularly at deep nodes. Our investigation revealed that this conflict frequency is significantly negatively correlated with gene entropy (R = -0.55, p &lt; 0.01) and sequence length (R = -0.63, p &lt; 0.001), but showed no significant direct correlation with overall evolution rate or informative sites ratio. Based on these findings, we developed a marker optimization framework integrating both the rate of evolution and entropy, identifying five optimal low-conflict markers (atp1, atp4, ccmFC, matR, rps3). Furthermore, differences in mitogenomic architectural features exhibited strong phylogenetic signals (Blomberg’s K), with GC content (K = 0.948, p&lt;0.001) and RNA editing site numbers (K = 1.092, p&lt;0.001) showing significant phylogenetic conservation and independently supporting the monocot-eudicot sister relationship through possession of shared characteristics. We also discovered significant negative correlations between branch length and both GC content and RNA editing site abundance. These findings demonstrate that mitochondrial genomic data, when appropriately analyzed considering RNA editing, gene characteristics like entropy, and complemented with genomic feature-based approaches, offers unique and valuable insights for resolving deep phylogenetic relationships in angiosperms.