cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.903kr/1
title: FEM_PALM_DATA

description: FEM_PALM_DATA: (1) The abundances (count data) for  each palm species across disturbance categories and replicates  (2 x 20 m plots). Also included are the abundances of non-palm woody stems for 1 m radius plots; and spherical densiometer  readings at every 5 m interval along the central plot axis. (2) SPATIAL DATA: The spatial locations of plots in UTM coordinates (3) READ ME: Description of data contained in the spatial data and palm abundance data tables.
DOI: 10.5061/dryad.cs1h4/1
title: Raw data on climate,plant and soil

description: This dataset includes all raw data that collected throughout experiments. Data relating to figure 1 to 4 is on separate worksheets (i.e. climate, plant and soil). All information relating to methodology, abbreviations and data collection are within the associated paper.
DOI: 10.5061/dryad.k2d8t/1
title: Collections of spiders and prey from wheat fields (Israel)

description: Web building spiders (Linyphiidae and Theridiidae) were collected in 1X1m plots. Potential prey was collected using sticky traps located horizontally above ground
DOI: 10.5061/dryad.n2s40/1
title: Fig 1 data
DOI: 10.5061/dryad.n2s40/2
title: Fig 5 data
DOI: 10.5061/dryad.nj938/1
title: science_title_chars

description: Exemplary information enabling to recover quantile dependence for number of characters in Science journal in years 1995-2004.
DOI: 10.5061/dryad.nj938/2
title: aggregated

description: Aggregated information about quantile regression slope coefficients beta(low), beta(half) and beta(top) as well as their uncertainties for all examined journals and factors
DOI: 10.5061/dryad.qn83r/10
title: Hawkmoth proboscis length (CY2 community)

description: Hawkmoths species from  CY2 community (Chaco-Yungas Transition, El Fuerte locality, Argentina) with values of mean proboscis lenght
DOI: 10.5061/dryad.qn83r/11
title: Effective flower lengths (AF community)

description: Plant species pollinated by hakwmoths from AF community (Atlantic forest, Brasil) with mean values of effective flower length
DOI: 10.5061/dryad.qn83r/12
title: Effective flower lengths (CE community)

description: Plant species pollinated by hakwmoths from CE community (El Cerrado, Brasil) with mean values of effective flower length
DOI: 10.5061/dryad.qn83r/13
title: Effective flower lengths (CM community)

description: Plant species pollinated by hakwmoths from CM community (Chaco Montane Dry Woodland, Argentina) with mean values of effective flower length
DOI: 10.5061/dryad.qn83r/14
title: Effective flower lengths (CY1 community)

description: Plant species pollinated by hakwmoths from CY1 community (Chaco-Yungas transition, Terma de Reyes locality, Argentina) with mean values of effective flower length
DOI: 10.5061/dryad.qn83r/15
title: Effective flower lengths (CY2 community)

description: Plant species pollinated by hakwmoths from CY2 community (Chaco-Yungas transition, El Fuerte locality, Argentina) with mean values of effective flower length
DOI: 10.5061/dryad.qn83r/8
title: Hawkmoth proboscis length (CM community)

description: Hawkmoths species from  CM community (Chaco Montane Dry Woodland, Argentina) with values of mean proboscis lenght
DOI: 10.5061/dryad.qn83r/9
title: Hawkmoth proboscis length (CY1 community)

description: Hawkmoths species from  CY1 community (Chaco-Yungas Transition, Terma de Reyes locality, Argentina) with values of mean proboscis lenght
DOI: 10.5061/dryad.qt635/2
title: Kdrymeia_morphology_data

description: Table containing raw data of morphometric analysis of Knautia drymeia. For abbreviations of characters and populations see main text of the manuscript.
DOI: 10.5061/dryad.r217r/1
title: Scripts
DOI: 10.5061/dryad.r217r/2
title: Figures

description: This archive contains the figures from the main text, available in 300 dpi .tif, .jpg and .fig (matlab) formats.
DOI: 10.5061/dryad.r217r/3
title: Data
DOI: 10.5061/dryad.r217r/4
title: ClimateData
DOI: 10.5061/dryad.r217r/5
title: Results
DOI: 10.5061/dryad.t1k4q/1
title: Compressed data archive for empirical data, model code and simulation outputs

description: This compressed archive includes multiple other files with several data sets from empirical studies (in .csv format for tabular data), the R code for a cellular automaton model of coral reef benthic community dynamics (a .R script), and a set of data files that are the model outputs used to produce figures in the manuscript (as .rdata files which can be read using R). Specific descriptions of each file are supplied in the ReadMe.txt file.
DOI: 10.5061/dryad.v677p/15
title: subject 11 single trial time frequency data

description: Data relative to subject 11: single trial time frequency data created by EEGLAB
DOI: 10.5061/dryad.v677p/16
title: subject 12 single trial time frequency data

description: Data relative to subject 12: single trial time frequency data created by EEGLAB
DOI: 10.5061/dryad.v677p/17
title: Archivio_Working files for_single trials analysis

description: Working files for single trial analysis: matricierr file contains the error associated with each trial; matricialpha1theta contains the power spetrum for the theta band
DOI: 10.5061/dryad.0m9n7/1
title: S2_File: tiff image stack of the example 3D spheroid culture used in figures 1-4 and figure 6

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of LNCaP human prostate cancer cells (ATCC, Rockville, USA) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/2
title: S3_File: ground truth manual segmentation data on 2D MIP images

description: This is a zip-file containing manually segmented 2D ground truth labeled masks of 3D spheroid cultures. The cultures are LNCaP cancer spheroids in co-culture with CAF stromal cells (untreated, DMSO samples). For the manual segmentation 2D maximum intensity projections (MIPs) were used of the original 3D stacks. The spheroids are labeled in five distinct classes: (1) well separated, (2) overlapping with brighter spheroids in the MIP (rendering it non-separable), (3) overlapping with less bright spheroids in the MIP (rendering it well separable), (4) merely touching other spheroids, and (5) touching the border of the 2D projection of the image. Opening of the images in FIJI (ImageJ) with the ROI Manager allows visual inspection of the data. For this purpose the cases (1) to (5) are color-coded in red, green, magenta, cyan, and blue, respectively.
DOI: 10.5061/dryad.0m9n7/3
title: S5_File: 3D image stack of PC346c cancer spheroids in co-culture with CAFs, control sample (DMSO), well A06, field 1

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of PC346c prostate cancer cells (a cell line obtained from the Erasmus Medical Center, via the PREDECT consortium) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/4
title: S5_File: 3D image stack of PC346c cancer spheroids in co-culture with CAFs, control sample (DMSO), well A06, field 2

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of PC346c prostate cancer cells (a cell line obtained from the Erasmus Medical Center, via the PREDECT consortium) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/5
title: S5_File: 3D image stack of PC346c cancer spheroids in co-culture with CAFs, control sample (DMSO), well A06, field 3

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of PC346c prostate cancer cells (a cell line obtained from the Erasmus Medical Center, via the PREDECT consortium) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/6
title: S5_File: 3D image stack of PC346c cancer spheroids in co-culture with CAFs, control sample (DMSO), well A06, field 4

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of PC346c prostate cancer cells (a cell line obtained from the Erasmus Medical Center, via the PREDECT consortium) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/7
title: S5_File: 3D image stack of PC346c cancer spheroids in co-culture with CAFs, control sample (DMSO), well A08, field 1

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of PC346c prostate cancer cells (a cell line obtained from the Erasmus Medical Center, via the PREDECT consortium) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.10qf3/1
title: Data from: Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data

description: Simulated data matrices from 'Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data'
DOI: 10.5061/dryad.13t00/1
title: transcriptome_and_annotation

description: The bank vole hippocampus transcriptome and its annotation. The transcriptome was assembled from 10 individuals derived form the laboratory model of adaptive radiation.
DOI: 10.5061/dryad.13t00/2
title: expression

description: The directory contains expression estimates (FPKM) for all studied transcripts in liver and hippocampus tissues. It contains also results for differentiation expression analyses between predatory and control lines.
DOI: 10.5061/dryad.13t00/3
title: allele_frequencies

description: Allele frequencies for identified SNPs. Data are separated into noncoding, UTR-located, synonymous and nonsynonymous SNPs.
DOI: 10.5061/dryad.13t00/4
title: Fst_tabels

description: 500 SNPs with largest overall Fst for predatory-control and aerobic-control comparison. The directory contains also Fst estimates between each pair of lines, calculated for mentioned above set of SNPs.
DOI: 10.5061/dryad.17sq0/1
title: Raw serial mark recapture data for B. roseni and B. terrabensis

description: This file contains raw data from weekly sampling events as well as the life-history stage classification for each individual captured and included in the study.
DOI: 10.5061/dryad.31v06.2/10.2
title: Supplemental Table 10 -  supplement of Figure 6S2

description: bacterial qPCR primers
DOI: 10.5061/dryad.31v06.2/2.2
title: Supplemental Table 2 -  supplement of Figure 4S2

description: mPFC_RNASeq
DOI: 10.5061/dryad.31v06.2/3.2
title: Supplemental Table 3 - supplement of figure 6S1

description: Unique OTUs in C57BL6 transplanted with NODvehicle cecal contend
DOI: 10.5061/dryad.31v06.2/4.2
title: Supplemental Table 4 - supplement of Figure 6S2

description: Shared Operational Taxonomic Units (OTUs) in mice displaying a decreased social behavior (NOD_vehicle and C57BL_6 transplanted with NOD microbiota)
DOI: 10.5061/dryad.31v06.2/5.2
title: Supplemental Table 5 -  supplement of Figure 7

description: List of metabolites detected in the cecum
DOI: 10.5061/dryad.31v06.2/6.2
title: Supplemental Table 6 – supplement of Figure 7

description: Pathway analysis results (metabolomics)
DOI: 10.5061/dryad.31v06.2/7.2
title: Supplemental Table 7

description: IlluminaMiSeq_16S data_run1_seqs
DOI: 10.5061/dryad.31v06.2/8.2
title: Supplemental Table 8

description: IlluminaMiSeq_16S data_run2_seqs.run2
DOI: 10.5061/dryad.31v06.2/9.2
title: Supplemental Table 9 -  supplement of Figure 4

description: qRT_PCR primer list
DOI: 10.5061/dryad.3n6s7/1
title: StephensonetalData

description: These are the raw data from the experiment described in the paper. The variables are as follows: fish = fish identity; sex = fish sex; infected = whether or not the fish was infected; date.inf = the date the fish was infected; dayofinf = the number of days post infection that the fish was tested; gyrocount = the number of parasites on the fish at the time of testing; length = fish length; weight = fish weight; drop = the order of the ball drop; position = whether the fish was closer or further away from the ball when it dropped; distance = the distance covered in mm during the 60s of the escape response. NB this file only contains the response data - fish and ball drops that failed to respond have been excluded, as per our original analysis.
DOI: 10.5061/dryad.5hk4b/1
title: Annual measures data set

description: Data for all analyses except for that on lifetime fitness.
DOI: 10.5061/dryad.5hk4b/2
title: LRS dataset

description: Data for lifetime fitness analysis
DOI: 10.5061/dryad.6bf38/2
title: SSR genotypes of Picea abies and P. obovata

description: Tsuda_Pabies_obovata.txt: The input file of STRUCTURE analysis based on 10loci of 1599 individuals. Missing data is coded as -9. Tsuda_Pabies_obovata_sampleInfo.xlsx: This file includes a list of population code, group, longitude (E) and latitude (N) which are corresponding to "Tsuda_Pabies_obovata.txt".
DOI: 10.5061/dryad.6jg71/1
title: figure1

description: SUPPLEMENTARY MATERIALS S1. – Set of Euler/X toolkit input data files for all alignments produced in the Prim-UC (Figs. 1, 3–7, S3 1–13). Each file is saved is saved in .txt format and contains annotations and instructions for run commands to yield the alignments and visualizations shown in the 19 corresponding figures.
DOI: 10.5061/dryad.6jg71/2
title: figure3

description: SUPPLEMENTARY MATERIALS S1. – Set of Euler/X toolkit input data files for all alignments produced in the Prim-UC (Figs. 1, 3–7, S3 1–13). Each file is saved is saved in .txt format and contains annotations and instructions for run commands to yield the alignments and visualizations shown in the 19 corresponding figures.
DOI: 10.5061/dryad.6jg71/3
title: figure4

description: SUPPLEMENTARY MATERIALS S1. – Set of Euler/X toolkit input data files for all alignments produced in the Prim-UC (Figs. 1, 3–7, S3 1–13). Each file is saved is saved in .txt format and contains annotations and instructions for run commands to yield the alignments and visualizations shown in the 19 corresponding figures.
DOI: 10.5061/dryad.6jg71/4
title: figure5

description: SUPPLEMENTARY MATERIALS S1. – Set of Euler/X toolkit input data files for all alignments produced in the Prim-UC (Figs. 1, 3–7, S3 1–13). Each file is saved is saved in .txt format and contains annotations and instructions for run commands to yield the alignments and visualizations shown in the 19 corresponding figures.
DOI: 10.5061/dryad.6jg71/5
title: figure6

description: SUPPLEMENTARY MATERIALS S1. – Set of Euler/X toolkit input data files for all alignments produced in the Prim-UC (Figs. 1, 3–7, S3 1–13). Each file is saved is saved in .txt format and contains annotations and instructions for run commands to yield the alignments and visualizations shown in the 19 corresponding figures.
DOI: 10.5061/dryad.7775d/1
title: Plant species list and soil data
DOI: 10.5061/dryad.7sj4h/1
title: BeePath2012
DOI: 10.5061/dryad.7tb57/1
title: T1D pedigree

description: This is a simple text file containing the biological relationships of individuals across 422 affected families. Each affected family was ascertained through a single proband with type 1 diabetes (T1D). This file is in the standard MERLIN pedigree format, with the first 6 columns specifying relationships, and the remaining columns specifying genotypes.
DOI: 10.5061/dryad.7tb57/2
title: T1D map

description: For each marker, this simple text file gives the name, the chromosome, and the chromosome-specific location. The order of the markers in this file, corresponds to the order of the columns in 'T1D pedigree'. In particular, there are 3697 markers in 'T1D map', which means that there are (6 + 2 * 3697) = 7400 columns in 'T1D pedigree'.
DOI: 10.5061/dryad.c763m/1
title: Ant species occurrence and site characterization

description: This data file include details of ant species occurrence for 349 European sites as well as the latitude and longitude and the biogeographic region corresponding to these sites. Further details are provided in the paper.
DOI: 10.5061/dryad.cs1h4/2
title: Summary statistics from MixSIAR model

description: This dataset mainly includes the data relating to figure 5. It shows the result of MixSIAR model. Time 1 represents August 24, 2013; Time 2 represents November 23, 2013; Time 3 represents January 19, 2014; Time 4 represents March 10, 2014; Time 5 represents May 5, 2014.
DOI: 10.5061/dryad.d689j/1
title: Dryad-Lohr-etal-westerns

description: These are all of the original images of the western blots in this manuscript.  They are in a powerpoint file.
DOI: 10.5061/dryad.d689j/2
title: Dryad-Lohr-etal-excelFSCV

description: This is an excel spreadsheet that shows all of the raw data collected for the fast scan cyclic voltammetry experiments. Tabs are used to delineate the various experiments.
DOI: 10.5061/dryad.f3k8p/1
title: Altman et al. 2016 JAE tadpole acclimation data

description: Data from the tadpole acclimation experiment
DOI: 10.5061/dryad.f3k8p/2
title: Altman et al. 2016 JAE trematode acclimation data

description: Data from the trematode acclimation experiment
DOI: 10.5061/dryad.h01gj/1
title: Taylor et al Atlantic sturgeon PLOS 2016 data

description: Metadata and raw data for Oceanic distribution, behaviour, and a winter aggregation area of adult Atlantic sturgeon, Acipenser oxyrinchus oxyrinchus, in the Bay of Fundy, Canada.
DOI: 10.5061/dryad.h020k/1
title: DataDryad

description: Data used for all data analyses
DOI: 10.5061/dryad.k2d8t/2
title: Predation of springtails and aphids by spiders

description: Results of microcosm experiment that tested the predation of Collembola and aphids by spiders (Lhinyphiidae and Theridiidae).
DOI: 10.5061/dryad.m8t72/1
title: Sequence Raw Data - Part 1

description: First part of a file containing the raw illumina sequencing data regarding Tadarida teniotis diet described in Mata et al.
DOI: 10.5061/dryad.ms739/1
title: ecog_dryad_data

description: Predator-prey time series at multiple forest locations across the southeastern USA.
DOI: 10.5061/dryad.p513f/1
title: Raw Data Summary

description: Raw data of fungal community OTUs, and OTU richness and abundance across 7 stand types, including Pinus contorta in: a) Canada, b) USA, c) Europe, d) Southern Hemisphere, and e) Pinus sylvestris in Europe, f) Nothofagus spp. in the Southern Hemisphere, and g) and Invading Pinus contorta individuals in Southern Hemisphere.
DOI: 10.5061/dryad.rh24n/5
title: Sydney_Raw Phenol

description: Seed transplants 2
DOI: 10.5061/dryad.08m9q/1
title: Data
DOI: 10.5061/dryad.0m9n7/10
title: S5_File: 3D image stack of PC346c cancer spheroids in co-culture with CAFs, control sample (DMSO), well A08, field 4

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of PC346c prostate cancer cells (a cell line obtained from the Erasmus Medical Center, via the PREDECT consortium) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/11
title: S5_File: 3D image stack of PC346c cancer spheroids in co-culture with CAFs, treated with docetaxel, well E08, field 1

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of PC346c prostate cancer cells (a cell line obtained from the Erasmus Medical Center, via the PREDECT consortium) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/12
title: S5_File: 3D image stack of PC346c cancer spheroids in co-culture with CAFs, treated with docetaxel, well E08, field 2

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of PC346c prostate cancer cells (a cell line obtained from the Erasmus Medical Center, via the PREDECT consortium) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/13
title: S5_File: 3D image stack of PC346c cancer spheroids in co-culture with CAFs, treated with docetaxel, well E08, field 3

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of PC346c prostate cancer cells (a cell line obtained from the Erasmus Medical Center, via the PREDECT consortium) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/14
title: S5_File: 3D image stack of PC346c cancer spheroids in co-culture with CAFs, treated with docetaxel, well E08, field 4

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of PC346c prostate cancer cells (a cell line obtained from the Erasmus Medical Center, via the PREDECT consortium) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/15
title: S5_File: 3D image stack of PC346c cancer spheroids in co-culture with CAFs, treated with MDV, well F05, field 1

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of PC346c prostate cancer cells (a cell line obtained from the Erasmus Medical Center, via the PREDECT consortium) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/16
title: S5_File: 3D image stack of PC346c cancer spheroids in co-culture with CAFs, treated with MDV, well F05, field 2

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of PC346c prostate cancer cells (a cell line obtained from the Erasmus Medical Center, via the PREDECT consortium) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/17
title: S5_File: 3D image stack of PC346c cancer spheroids in co-culture with CAFs, treated with MDV, well F05, field 3

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of PC346c prostate cancer cells (a cell line obtained from the Erasmus Medical Center, via the PREDECT consortium) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/8
title: S5_File: 3D image stack of PC346c cancer spheroids in co-culture with CAFs, control sample (DMSO), well A08, field 2

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of PC346c prostate cancer cells (a cell line obtained from the Erasmus Medical Center, via the PREDECT consortium) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/9
title: S5_File: 3D image stack of PC346c cancer spheroids in co-culture with CAFs, control sample (DMSO), well A08, field 3

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of PC346c prostate cancer cells (a cell line obtained from the Erasmus Medical Center, via the PREDECT consortium) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.13t00/5
title: scripts

description: The set of scripts used for SNPs calling, expression analyses, Fst calculation and pedigree-based simulations.