cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19091423.v2
title: Absence of enterotypes in the human gut microbiomes reanalyzed with non-linear dimensionality reduction methods

description: Here we provide data and software for the work "Absence of enterotypes in the human gut microbiomes reanalyzed with non-linear dimensionality reduction methods". <br> <br> Enterotypes of the human gut microbiome have been proposed to be a powerful prognostic tool to evaluate the correlation between lifestyle, nutrition, and disease. However, the number of enterotypes suggested in the literature ranged from two to four. The growth of available metagenome data and the use of exact, non-linear methods of data analysis challenges the very concept of clusters in the multidimensional space of bacterial microbiomes. <br> We demonstrate the presence of a lower-dimensional structure in the microbiome space, with high-dimensional data concentrated near a low-dimensional non-linear submanifold, but the absence of distinct and stable clusters that could represent enterotypes. This observation is robust with regard to diverse combinations of dimensionality reduction techniques and clustering algorithms.<br> <br> We used <strong>16S rRNA </strong>genotype data from the National Institutes of Health <strong>Human Microbiome Project (HMP)</strong> and <strong>American Gut Project (AGP) </strong>presented in <strong>Order, Family, and Genus taxonomic levels (O, F, and G, respectively)</strong>. These largest open-access available datasets provide a sufficient number of data points for correct estimation of the clustering partition and constructing a manifold. We used 3457 HMP samples from stool and rectum body sites downloaded from https://portal.hmpdacc.org/ and 9511 samples from AGP downloaded from https://figshare.com/ as abundance matrices. <br> All datasets were normalized by dividing the Operational Taxonomic Units (OTUs) values by the total sum of abundances for a given data sample.
DOI: 10.17632/hmc8dc7chv.1
title: Original figures of Western blotting

description: Original figures of Western blotting
DOI: 10.6084/m9.figshare.20498916
title: Figure 2

description: Electric field L map data and code
DOI: 10.6084/m9.figshare.20498916.v1
title: Figure 2

description: Electric field L map data and code
DOI: 10.6084/m9.figshare.20498961
title: Figure 4

description: Temperature dependent PL with and without hBN
DOI: 10.6084/m9.figshare.20498961.v1
title: Figure 4

description: Temperature dependent PL with and without hBN
DOI: 10.6084/m9.figshare.20498880
title: Figure 1

description: Figure 2c,Polarization dependent PL
DOI: 10.6084/m9.figshare.20498880.v1
title: Figure 1

description: Figure 2c,Polarization dependent PL
DOI: 10.6084/m9.figshare.20498907
title: Figure 2

description: Doping dependent PL
DOI: 10.6084/m9.figshare.20498907.v1
title: Figure 2

description: Doping dependent PL
DOI: 10.6084/m9.figshare.20498955
title: Figure 3

description: Magnetic field dependent PL
DOI: 10.6084/m9.figshare.20498955.v1
title: Figure 3

description: Magnetic field dependent PL
DOI: 10.5281/zenodo.6998799
title: STORMS checklist: Dysbiosis of the enteric microbiota due to Crohn's disease treatment associated with MAIT cell activation

description: STORMS checklist initiative to standardize reporting of human microbiome research, regarding submission to peer-reviewed journal.
description: {"references": ["Mirzayi, Chloe, Waldron, Levi, & Marques, Francine. (2021). Reporting guidelines for human microbiome research: the STORMS checklist and analytical sample size flowchart. Nature Medicine, 1\u20138. https://doi.org/10.5281/zenodo.5714305"]}
DOI: 10.5281/zenodo.6998798
title: STORMS checklist: Dysbiosis of the enteric microbiota due to Crohn's disease treatment associated with MAIT cell activation

description: STORMS checklist initiative to standardize reporting of human microbiome research, regarding submission to peer-reviewed journal.
description: {"references": ["Mirzayi, Chloe, Waldron, Levi, & Marques, Francine. (2021). Reporting guidelines for human microbiome research: the STORMS checklist and analytical sample size flowchart. Nature Medicine, 1\u20138. https://doi.org/10.5281/zenodo.5714305"]}
DOI: 10.17632/z8g3wgbmrb.1
title: NATURE OF CLASSICAL GEOGRAPHY AND DEVELOPMENT OF SCIENTIFIC METHODOLOGY IN GEOGRAPHY

description: The nature of Classical geography and development of scientific methodology in geography.
DOI: 10.17632/vnbt63r6ny.1
title: Water Front Proxy simulator

description: - This source includes the main App code of the LSTM and BiLSTM-based proxy models for determining waterfront location in an injection process.
The main program needs several sub-codes and functions for applying, so it can not be run independently. But the proxy models' structure and features can be reused from this source.
- The developed proxy models are trained with a mixture of numerical simulation data, common well data, and some pre-defined geometrical data. The trained models can be used for front location simulation independent from any numerical simulation data.
- Additional instructions for use are commented through the code's sections.
- Some examples of the training performance are attached too.
DOI: 10.17632/jt96j3htfj.1
title: Grain size of friction stir welded AA6061 sheets (100 x 75 x 3 mm) 

description: In this version, we share the experimental data of friction stir welded aluminum sheets and their quality evaluation by determining the grain size at the nugget zone. Following are the details of the experiment:

(1) Base material: Aluminum alloy, AA6061. Sheet dimension: 100 x 75 x 3 mm
(2) Welding is performed on the as-received sheets
(3) Welding machine: Vertical Milling Machine (BFW, VF 3.5)
(4) Welding parameters: Tool rotational speed, Welding speed, and Tool tilt angle 
(5) Weld characterization: (a) Specimen cut from weld: 25 mm × 10 mm, (b) Polishing, (c) Microscopic imaging, and (d) Line intercept method to calculate grain size
DOI: 10.17632/m4z855d9mk.1
title: How Safe Is Gadobutrol? Examining the Effect of Gadolinium Retention in the Nervous System 

description: Gadobutrol is a gadolinium-based contrast agent (GBCA) used in medical imaging. In this study, we aimed to assess the effect of chronic gadobutrol administration on the central and peripheral nervous systems. Our results show that gadobutrol causes significant gadolinium retention in the brain, spinal cord, and peripheral nerves. Repeated injections of gadobutrol do not cause cognitive, motor, or sensory impairment. Gadobutrol significantly increases LDH activity in the hippocampus but not in peripheral nerves and leads to a decreased activation threshold in the sciatic nerve.
DOI: 10.5067/sts5lclw320l
title: Sounder SIPS: JPSS-1 ATMS Level 1 Daily Polygon Granule Map
DOI: 10.5067/ralzntokg6pd
title: Sounder SIPS: Suomi-NPP ATMS Level 1 Daily Polygon Granule Map
DOI: 10.17632/d98n44w2zt.1
title: As relações sociais e o mercado de alimentos orgânicos na zona leste de São Paulo

description: Os dados aqui depositados são referente à dissertação de mestrado intitulada “As relações sociais e o mercado de alimentos orgânicos da associação de agricultores da zona leste de São Paulo”, de Giorgia Redwitz Arabe, orientada por mim, Marta F. Sambiase e com apoio de Paulo Niederle do PPPS (UFRGS), desenvolvida no PPGA (Programa de Pós Graduação em Administração) da Universidade P. Mackenzie, disponível pelo link https://dspace.mackenzie.br/handle/10899/28372
DOI: 10.17632/jnf9v29pjg.1
title: Data used in Hofmeister et al.: Species-rich plant communities in interior habitats of small forest fragments: the role of seed dispersal and edge effect

description: Data about plant species and environmental conditions used in Hofmeister et al. Species-rich plant communities in interior habitats of small forest fragments: the role of seed dispersal and edge effect.
DOI: 10.17632/xkwvwcshdg.1
title: Computational Study of Very High Spin Actinyl Peroxide Matryoshka Nanoclusters Data Sheet

description: The Data Accompanying the Computational Study of Very High Spin Actinyl Peroxide Matryoshka Nanoclusters paper. Please find within the vibrational frequencies, control, coordinate, gradient files, and starting geometries for the suite of PBE calculations performed, as well as the coordinate, control, and DSCF output files for the PBE0 calculations performed at each spin state.
DOI: 10.17632/4vbbb3rvkk.1
title: Outward FDI: National and Regional Policy Implications for Technology Innovation

description: We utilize a panel of 31 Chinese provinces covering the time period 2006 to 2016, including all the above variables, sourced principally from the China Statistical Yearbook with additional secondary data from the OECD others as we describe in Table 1. We add in the controls such as employment, government investment, output, and infrastructure. We normalize all prices to 2006 international US dollars. Prior to 2006 the data for some provinces, such as Xinjiang and Tibet, is somewhat limited and so is not included.
DOI: 10.17632/4vbbb3rvkk.2
title: Outward FDI, Absorptive Research Capacity and Domestic Technological Innovation: Implications for National and Regional Policy

description: We utilize a panel of 31 Chinese provinces covering the time period 2006 to 2019, including all the above variables, sourced principally from the China Statistical Yearbook with additional secondary data from the OECD others as we describe in Table 1. We add in the controls such as employment, government investment, output, and infrastructure. We normalize all prices to 2006 international US dollars. Prior to 2006 the data for some provinces, such as Xinjiang and Tibet, is somewhat limited and so is not included.
DOI: 10.17632/k4d7rxb5kg.1
title: RNA-seq3

description: RNA-seq data
DOI: 10.17632/zzrhh6hrdr.1
title: Data to replicate "Parents Influence Responsible Credit Use in Young Adults: Empirical Evidence from the United States, France and Brazil", published in Journal of Family and Economic Issues in 2021.

description: Here you have 2 documents to replicate the paper: "Parents Influence Responsible Credit Use in Young Adults: Empirical Evidence from the United States, France and Brazil", published in Journal of Family and Economic Issues in 2021: 1. Questionnaire (in Portuguese) 2. data collected
DOI: 10.17632/zzrhh6hrdr.2
title: Data to replicate "Parents Influence Responsible Credit Use in Young Adults: Empirical Evidence from the United States, France and Brazil", published in Journal of Family and Economic Issues in 2021. 

description: Here you have 2 documents to replicate the paper: "Parents Influence Responsible Credit Use in Young Adults: Empirical Evidence from the United States, France and Brazil", published in Journal of Family and Economic Issues in 2021:
1. Questionnaire (in Portuguese)
2. data collected
DOI: 10.7284/129335
title: INS (Inertial Navigation System) data collected during research cruise FK180415 using a Kongsberg Seapath 320 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129329
title: Singlebeam Echosounder data collected during research cruise FK180415 using a Kongsberg EA600 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129762
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise FK180824 using a SeaBird SBE-911+ instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129773
title: INS (Inertial Navigation System) data collected during research cruise FK180824 using a Kongsberg Seapath 320 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17632/dgwd7dknvn.1
title: RNA-seq1

description: RNA-seq data
DOI: 10.7284/129756
title: INS (Inertial Navigation System) data collected during research cruise FK181005 using a Kongsberg Seapath 320 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17632/2bk42km7jx.1
title: RNA-seq2

description: RNA-seq data
DOI: 10.17632/vhy346yc8h.1
title: Dataset for Modified Energy Span Analysis of Catalytic Parallel Pathways and Selectivity

description: Mechanistic modeling provides vital insights into catalytic reactions. To analyze complex reaction networks with parallel pathways, we leverage the graph theory approach of the Energy Span Model (ESM) to develop a modified energy span analysis (MESA). A new method of cycle plots is proposed to perform reaction pathways analysis visually. We demonstrate this method on two published models: one describing carbon monoxide oxidation and the other simulating ethylene conversion to propanal via hydroformylation or ethane via hydrogenation. Fundamental insights explain kinetic observables, such as a reactant’s negative reaction order. General principles are revealed, such as rate-determining surface species being outside the primary reaction flux cycle and pathway selectivity being a purely kinetic property when reaction conditions are not near equilibrium. Finally, we demonstrate MESA’s consistency with published microkinetic modeling results, highlighting this technique’s extension of the ESM to heterogeneous catalysts using collision theory to describe adsorption steps and concentration effects.
DOI: 10.17632/ctkh2zy6s3.1
title: DAST scanning sessions dataset

description: This dataset consists of network flow features generated by the tool CICFlowMeter on network captures collected at the University of Belgrade, School of Electrical Engineering. The samples include scanning sessions of 4 DAST tools - Nikto, Vega, OWASP ZAP and Arachni targeted at the OWASP WebGoat application. DAST tools were installed on one virtual machine, while the target was placed on another, with all traffic being routed through a third machine which captured it using the tcpdump utility. For each of the scanners one session was captured, except Arachni, whose scanning phase was divided into 3 sessions. After processing the .pcap files with CICFlowMeter, the output for each of the sessions was split randomly into training_set, validation_set and test_set in 60:20:20 ratio, respectively. In addition to the scanning, OWASP ZAP and Vega offer built-in proxy servers for HTTP traffic examination. Interactions of these utilities and Webgoat application were also captured and are present in dast_proxy file. Finally, in shortened_flows, for each of the the scanning sessions, a subset of flows was shortened to 10, 15, 20, 25 and 50 packets. Features were extracted using CICFlowMeter once again, to allow for analysis of flow statistics at different points in time
DOI: 10.17632/ctkh2zy6s3.2
title: DAST scanning sessions dataset

description: This dataset consists of network flow features generated by the tool CICFlowMeter on network captures collected at the University of Belgrade, School of Electrical Engineering. The samples include scanning sessions of 4 DAST tools - Nikto, Vega, OWASP ZAP and Arachni targeted at the OWASP WebGoat application. DAST tools were installed on one virtual machine, while the target was placed on another, with all traffic being routed through a third machine which captured it using the tcpdump utility. For each of the scanners one session was captured, except Arachni, whose scanning phase was divided into 3 sessions. After processing the .pcap files with CICFlowMeter, the output for each of the sessions was split randomly into training_set, validation_set and test_set in 60:20:20 ratio, respectively. In addition to the scanning, OWASP ZAP and Vega offer built-in proxy servers for HTTP traffic examination. Interactions of these utilities and Webgoat application were also captured and are present in dast_proxy file. Finally, in shortened_flows, for each of the the scanning sessions, a subset of flows was shortened to 10, 15, 20, 25 and 50 packets. Features were extracted using CICFlowMeter once again, to allow for analysis of flow statistics at different points in time
DOI: 10.17632/xfwh9bfjn2.1
title: Validation of the index for facial angiofibroma (IFA), a new scoring tool to assess facial angiofibromas in the tuberous sclerosis complex, supplemental material

description: Supplemental material for "Validation of the index for facial angiofibroma (IFA), a new scoring tool to assess facial angiofibromas in the tuberous sclerosis complex"
DOI: 10.17632/xfwh9bfjn2.2
title: Validation of the index for facial angiofibroma (IFA), a new scoring tool to assess facial angiofibromas in the tuberous sclerosis complex, supplemental material

description: Supplemental material for "Validation of the index for facial angiofibroma (IFA), a new scoring tool to assess facial angiofibromas in the tuberous sclerosis complex"
DOI: 10.17632/jncptwdgsx.1
title: Geographical Representation - MPs residence for 27 European countries

description: MPs' municipality of residence for the 27 parliaments of European countries, most current term (as of September 2021).  More than 5000 MPs in total.
DOI: 10.17632/my3fx9wzyb.1
title: Reciprocating wear testing raw data on piston aluminum alloys

description: Experimental data from reciprocating wear testing on piston aluminum-silicon alloys under various forces and speeds
DOI: 10.17632/my3fx9wzyb.2
title: Reciprocating wear testing raw data on piston aluminum alloys

description: Experimental data from reciprocating wear testing on piston aluminum-silicon alloys under various forces and speeds
DOI: 10.17632/tvdsg4tdpc.1
title: Cluster analysis reveals eosinophilia and fibrosis as poor prognostic markers in 128 patients with eosinophilic fasciitis - Supplemental Material

description: Supplemental Table 1 and Figures related to the article "Cluster analysis reveals eosinophilia and fibrosis as poor prognostic markers in 128 patients with eosinophilic fasciitis" are available here.
Supplemental Table 1: Malignancies, autoimmune or inflammatory diseases, and drug associated to eosinophilic fasciitis (AID)
Supplemental Figure 1: Flow chart of the study
Supplemental Figure 2: Multiple correspondence analysis derived dendrogram and factor map of 128 individuals highlighting the clustering of eosinophilic patients
DOI: 10.17632/gt4gw5hxx7.1
title: Data set on Well trajectory, grid design and oil rim reservoir properties

description: The grid tables are developed using mensuration analysis to design a model with 20 cells in the z direction and a certain dip angle of 6 degrees to account for the dip angle property of the oil rim reservoir. The figures describe the relationships between reservoir rock and fluid properties used for each cell in the model. These estimates in conjunction with the heterogeneous porosity values help to estimate the oil and gas reserves. The well trajectories are essential to proper well placements for oil production and (secondary and enhanced oil recovery injection options)
DOI: 10.17632/gt4gw5hxx7.2
title: Data set on Well trajectory, grid design and oil rim reservoir properties

description: The grid tables are developed using mensuration analysis to design a model with 20 cells in the z direction and a certain dip angle of 6 degrees to account for the dip angle property of the oil rim reservoir. The figures describe the relationships between reservoir rock and fluid properties used for each cell in the model. These estimates in conjunction with the heterogeneous porosity values help to estimate the oil and gas reserves. The well trajectories are essential to proper well placements for oil production and (secondary and enhanced oil recovery injection options)
DOI: 10.17632/ysvhc97szv.1
title: Main refitted sequences from Nahal Rahaf 2 Rockshelter

description: This database contains information and illustrations of the main refitted sequences identified in the lithic industry of the Upper Paleolithic site Nahal Rahaf 2 Rockshelter (southern Judean Desert, Israel). It is provided prior to formal publication as an insight into the lithic knapping traditions of the Arkov-Divshon cultural entity.
DOI: 10.17632/n9d3sjry94.1
title: Interaction of Shibantan Biota and environment in the terminal Ediacaran ocean: evidence from I/Ca and sulfur isotopes

description: Geochemical results of Shibantan member, Dengying Formation at Wuhe, South China
The data is related to a peer-reviewed paper that will be published in Precambrian Research with the same title. See details including the method, hypothesis, and discussion in that paper.
DOI: 10.17632/n9d3sjry94.2
title: Interaction of Shibantan Biota and environment in the terminal Ediacaran ocean: evidence from I/(Ca+Mg) and sulfur isotopes

description: Geochemical results of Shibantan member, Dengying Formation at Wuhe, South China
The data is related to a peer-reviewed paper that will be published in Precambrian Research with the same title. See details including the method, hypothesis, and discussion in that paper.
DOI: 10.17632/r73wsfffn5.1
title: The effect of delayed treatment in breast cancer patients: how much is too late? An experience of a single-center study

description: Dataset to analyze the influence of time to surgery, or any first treatment, on important breast cancer outcomes.
DOI: 10.17632/hz3pjthz2t.1
title: Shapley Value Expressed Tanimoto similarity (SVETA) — Data for evaluation

description: The Shapley Value-Expressed Tanimoto similarity (SVETA) approach enables the efficient calculation of exact Shapley values for support vector machine predictions using the Tanimoto kernel.
An exemplary analysis was carried using the data set provided herein, consisting of compounds active against the adenosine receptor A3 (UniProt ID: P0DMS8) and randomly selected compounds with other activities.
Please, also see: https://zenodo.org/record/6792073
DOI: 10.7284/108916
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS120311BB using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108915
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS120311BB using a SeaBird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.34740/kaggle/dsv/4080647
title: Tales from the Pizza Guy
DOI: 10.6084/m9.figshare.3761562.v2312
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.7284/111169
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1315 using a RDI VmDas instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111171
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1315 using a SeaBird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17632/xpbxbzy4th.1
title: EWS/FLI mediated reprogramming of 3D chromatin promotes an altered transcriptional state in Ewing sarcoma

description: Codes used to analyze NGS data used in the manuscript titled.