cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14266312
title: Modelled gridded population estimates for the Kasaï-Oriental Province in the Democratic Republic of Congo (2024) version 4.2

description: This repository contanins the inputa data and scripts used to create the modelled gridded population estimates for the Kasaï-Oriental Province in the Democratic Republic of Congo (2024) version 4.2. It also includes the grid-cell posterior distributions and scripts to aggregate them within user-defined geographic boundaries. In particular, this repository contains two compresssed files (.zip):

1. population_estimates.zip



Includes raster files (.tif) with summaries of population count posterior predictions at the grid-cell level, namely the mean, median, lower credible interval, and upper credible interval.

Includes spatial files (.gpkg) with summaries of population count posterior predictions at the health-area and health-zone levels, namely the mean, median, lower credible interval, and upper credible interval.


2. population_model.zip

This directory comprises five subdirectories with scripts, input data, and output data necessary to replicate the population model:



01_model_stan: Contains the Stan model), input data, and an R script (01_model_stan.R) with a function to run the model.

02_model_run: Includes an R script (02_model_run.R) for running the model, along with output data.

03_model_evaluate: Features a Quarto report template (03_model_evaluate.qmd) and model evaluation summary files(.pdf).

04_predict_posterior: Provides R scripts (04_predict_posterior.R and 04_predict_run.R) for generating predictions, along with input and output data, namely the posterior predictions files (.rds).

05_aggregate_posterior: Contains R scripts (05_aggregate_posterior.R and 05_aggregate_run.R) and associated input and output data, namely the population count posterior summaries as presented in the file population_estimate.zip .


The work was carried out in R (version 4.4.0), with the packages tidyverse (version 2.0.0), terra (version 1.7-78), sf (version 1.0-16), furrr (version 0.3.1), doParallel (version 1.0.17), foreach (version 1.5.2), rstudioapi (version 0.16.0), and rstan (version 2.32.6), on MacOS Sequoia (version 15.1.1). While the scripts are designed to be portable, minor adjustments may be required for compatibility with other operating systems.

For inquiries regarding the model and the data, please contact Gianluca Boo at gianluca.boo@soton.ac.uk.
DOI: 10.5281/zenodo.14502232
title: Modelled gridded population estimates for the Kasaï-Oriental Province in the Democratic Republic of Congo (2024) version 4.2

description: This repository contanins the inputa data and scripts used to create the modelled gridded population estimates for the Kasaï-Oriental Province in the Democratic Republic of Congo (2024) version 4.2. It also includes the grid-cell posterior distributions and scripts to aggregate them within user-defined geographic boundaries. In particular, this repository contains two compresssed files (.zip):

1. population_estimates.zip



Includes raster files (.tif) with summaries of population count posterior predictions at the grid-cell level, namely the mean, median, lower credible interval, and upper credible interval.

Includes spatial files (.gpkg) with summaries of population count posterior predictions at the health-area and health-zone levels, namely the mean, median, lower credible interval, and upper credible interval.


2. population_model.zip

This directory comprises five subdirectories with scripts, input data, and output data necessary to replicate the population model:



01_model_stan: Contains the Stan model), input data, and an R script (01_model_stan.R) with a function to run the model.

02_model_run: Includes an R script (02_model_run.R) for running the model, along with output data.

03_model_evaluate: Features a Quarto report template (03_model_evaluate.qmd) and model evaluation summary files(.pdf).

04_predict_posterior: Provides R scripts (04_predict_posterior.R and 04_predict_run.R) for generating predictions, along with input and output data, namely the posterior predictions files (.rds).

05_aggregate_posterior: Contains R scripts (05_aggregate_posterior.R and 05_aggregate_run.R) and associated input and output data, namely the population count posterior summaries as presented in the file population_estimate.zip .


The work was carried out in R (version 4.4.0), with the packages tidyverse (version 2.0.0), terra (version 1.7-78), sf (version 1.0-16), furrr (version 0.3.1), doParallel (version 1.0.17), foreach (version 1.5.2), rstudioapi (version 0.16.0), and rstan (version 2.32.6), on MacOS Sequoia (version 15.1.1). While the scripts are designed to be portable, minor adjustments may be required for compatibility with other operating systems.

This version includes fixes in the 04_predict_posterior.R script. For inquiries regarding the model and the data, please contact Gianluca Boo at gianluca.boo@soton.ac.uk.
DOI: 10.5281/zenodo.15113660
title: Modelled gridded population estimates for the Kasaï-Oriental Province in the Democratic Republic of Congo (2024) version 4.2

description: Content

This repository contains the input data and scripts used to create the modeled gridded population estimates for Kasaï-Oriental Province in the Democratic Republic of Congo. It also includes the grid-cell posterior distributions and scripts to aggregate them within user-defined geographic boundaries.

 In particular, this repository contains two compressed files (.zip):

1. population_estimates.zip



Includes raster files (.tif) with summaries of population count posterior predictions at the grid-cell level, specifically the mean, median, lower credible interval, and upper credible interval.

Includes spatial files (.gpkg) with summaries of population count posterior predictions at the health-area and health-zone levels, specifically the mean, median, lower credible interval, and upper credible interval.


2. population_model.zip

This directory comprises five subdirectories with scripts, input data, and output data necessary to replicate the population model:



01_model_stan: Contains the Stan model, input data, and an R script (01_model_stan.R) with a function to run the model.

02_model_run: Includes an R script (02_model_run.R) for running the model, along with output data.

03_model_evaluate: Features a Quarto report template (03_model_evaluate.qmd) and model evaluation summary files(.pdf).

04_predict_posterior: Provides R scripts (04_predict_posterior.R and 04_predict_run.R) for generating predictions, along with input and output data, namely the posterior predictions files (.rds).

05_aggregate_posterior: Contains R scripts (05_aggregate_posterior.R and 05_aggregate_run.R) and associated input and output data, namely the population count posterior summaries as presented in the file population_estimates.zip .


The work was carried out in R (version 4.4.0), with the packages tidyverse (version 2.0.0), terra (version 1.7-78), sf (version 1.0-16), furrr (version 0.3.1), doParallel (version 1.0.17), foreach (version 1.5.2), rstudioapi (version 0.16.0), and rstan (version 2.32.6), on macOS Sequoia (version 15.1.1). While the scripts are designed to be portable, minor adjustments may be required for compatibility with other operating systems.

Important

This version includes changes in the STAN model 10h_survey_survey_covariate_building_random_effect_hierarchy_building_covariate_density_fixed_effect_hierarchy_density.stan. Consequentely, all the files generated in the previous versions are now changed.

 

For inquiries regarding the model and the data, please contact Gianluca Boo at gianluca.boo@soton.ac.uk.
DOI: 10.15468/dl.ysz8mm
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((3.31598 43.2615,4.60921 43.33732,4.36235 43.83116,4.18814 44.04557,3.71122 44.09456,3.17567 43.81195,3.31598 43.2615))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Holcus lanatus L.",
 "Year 2015-2025"
 ]
}

 The dataset includes 213 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002006-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rugpgc
title: Occurrence Download

description: A dataset containing 273 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Propomacrus muramotoae Fujioka, 2007, Propomacrus davidi Deyrolle, 1874, Cheirotonus terunumai Muramoto, 2008, Cheirotonus macleayi Hope, 1840, Cheirotonus battareli Pouillaude, 1913, Cheirotonus jansoni (Jordan, 1898), Cheirotonus formosanus Ohaus, 1913, Cheirotonus gestroi Pouillaude, 1913, Cheirotonus fujiokai Muramoto, 1994)"
 ]
}

 The dataset includes 273 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002007-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25318/4210009201-eng
title: Centre-based child care providers with at least one staff and average number of staff, by role and employment status, April 2022, Canada

description: Proportion of centre-based child care providers with at least one staff and average number of staff by roles including supervisory staff, staff providing direct care to children and support staff as well as if the staff is employed part-time, full-time or casual, on call, or supply staff, Canada.
DOI: 10.6084/m9.figshare.28723310
title: Spermatogenesis - processed

description: Dataset of scRNA-seq measurements from spermatogenesis cells, including cell state annotation from the original study, and spliced and unspliced reads estimated with velocyto. This version has been processed, following standard scRNA-seq preprocessing steps, and RNA velocity inferred.Please also cite the original publication: https://doi.org/10.1016/j.celrep.2018.10.026.
DOI: 10.6084/m9.figshare.28723310.v1
title: Spermatogenesis - processed

description: Dataset of scRNA-seq measurements from spermatogenesis cells, including cell state annotation from the original study, and spliced and unspliced reads estimated with velocyto. This version has been processed, following standard scRNA-seq preprocessing steps, and RNA velocity inferred.Please also cite the original publication: https://doi.org/10.1016/j.celrep.2018.10.026.
DOI: 10.15468/dl.pm7vur
title: Occurrence Download

description: A dataset containing 179048 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than 50000",
 "Year is 2017",
 "DecimalLongitude is greater than or equal to 7.38",
 "DecimalLongitude is less than or equal to 9.03",
 "DecimalLatitude is greater than or equal to 55.1",
 "DecimalLatitude is less than or equal to 56.06"
 ]
}

 The dataset includes 179048 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001996-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9sg78f
title: Occurrence Download

description: A dataset containing 14724 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "OccurrenceStatus is Present",
 "TaxonKey is Numenius arquata (Linnaeus, 1758)",
 "Year 1975-2025"
 ]
}

 The dataset includes 14724 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002009-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c6h2rp
title: Occurrence Download

description: A dataset containing 2507854 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Anthozoa"
 ]
}

 The dataset includes 2507854 records from 1258 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001999-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111322535
title: Cuneiform Tablet 000244, CUN.000244

description: [Text Description:] Cuneiform Tablet, Letter, 000244 ❧ [Text or Publication Number Note:] CUN.000244 ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script
DOI: 10.15468/dl.rrqacf
title: Occurrence Download

description: A dataset containing 768 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ptyas mucosa (Linnaeus, 1758)"
 ]
}

 The dataset includes 768 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004631-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ys9bda
title: Occurrence Download

description: A dataset containing 8239 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus strobus L."
 ]
}

 The dataset includes 8239 records from 200 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065554-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ziit8k
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melocactus pachyacanthus Buining & Brederoo"
 ]
}

 The dataset includes 29 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002803-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uumnp9
title: Occurrence Download

description: A dataset containing 247 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudoeurycea werleri Darling & Smith, 1954"
 ]
}

 The dataset includes 247 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003828-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111322539
title: Cuneiform Tablet 000244, CUN.000244

description: [Text Description:] Cuneiform Tablet, Letter, 000244 ❧ [Text or Publication Number Note:] CUN.000244 ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script
DOI: 10.15468/dl.03djzi
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Strigomerus ferrugineus (Péringuey, 1896)"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065555-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111131610
title: 1 Enoch 106:19-107:1 papyrus, Schoyen MS 4612/6

description: [Text Description:] Text from Enoch ❧ [Text or Publication Number Note:] Schoyen MS 4612/6 ❧ [Medium:] Papyrus ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 1 fragment, 3 partial lines; medium brown, ink clear
DOI: 10.15468/dl.deavff
title: Occurrence Download

description: A dataset containing 3474 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1820-2018",
 "HasCoordinate is true",
 "TaxonKey is Hoplias malabaricus (Bloch, 1794)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3474 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002795-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtduyz
title: Occurrence Download

description: A dataset containing 2888 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psittacus erithacus Linnaeus, 1758"
 ]
}

 The dataset includes 2888 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005011-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4yjvq
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudoeurycea praecellens (Rabb, 1955)"
 ]
}

 The dataset includes 6 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003827-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111131611
title: 1 Enoch 106:19-107:1 papyrus, Schoyen MS 4612/6

description: [Text Description:] Text from Enoch ❧ [Text or Publication Number Note:] Schoyen MS 4612/6 ❧ [Medium:] Papyrus ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 1 fragment, 3 partial lines; medium brown, ink clear
DOI: 10.15468/dl.ehslo8
title: Occurrence Download

description: A dataset containing 6599 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus contorta Douglas ex Loudon"
 ]
}

 The dataset includes 6599 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065560-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mk7r92
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Micranthocereus polyanthus (Werderm.) Backeb."
 ]
}

 The dataset includes 31 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002819-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111129704
title: 4Q(?)Ruth (Ruth 2.1-2), DSS F.120

description: [Text Description:] Remains of three lines from Ruth ❧ [Text or Publication Number Note:] DSS F.120; DSS F.Ruth1; Schoyen MS 5441 ❧ [Medium:] Parchment ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 5.7x4.1cm, thickness of .58±.08mm; dark brown, flaking ❧ [Physical Object Note:] Parts of 3 lines; line spacing 7mm; bottom margin of 36mm
DOI: 10.15468/dl.8ve2um
title: Occurrence Download

description: A dataset containing 239 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lathyrus quinquenervius (Miq.) Litv."
 ]
}

 The dataset includes 239 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003955-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3mgldh
title: Occurrence Download

description: A dataset containing 188 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chrysochlamys membranacea Planch. & Triana",
 "Country is Ecuador"
 ]
}

 The dataset includes 188 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065562-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yxa96e
title: Occurrence Download

description: A dataset containing 492 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-130.95088 24.72586,-97.04912 24.72586,-97.04912 38.27414,-130.95088 38.27414,-130.95088 24.72586))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phocoena sinus Norris & McFarland, 1958"
 ]
}

 The dataset includes 492 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064036-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111129707
title: 1QRule of Blessings (1Q28b) frg. 25a\, 1QSb V 22-25, 1Q28b

description: [Text Description:] Fragment from 1QSb ❧ [Text or Publication Number Note:] DSS F.127; DSS F1QSb; 1QSb; 1Q28b; Schoyen MS 1909 ❧ [Medium:] Parchment ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 3.3x1.6cm; originally another piece at top right--11x6mm; .26mm thick, light in color ❧ [Physical Object Note:] Remains of 4 lines; traces of rule lines ❧ [Physical Object Note:] 2 parts of layer from next turn of scroll, 9.7mm and 5mm with no writing; main fragment still has small pieces attached
DOI: 10.15468/dl.xd2d24
title: Occurrence Download

description: A dataset containing 6632489 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 6632489 records from 437 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002785-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xhgbg3
title: Occurrence Download

description: A dataset containing 450352 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((96.33 24.67,104.5 24.67,104.5 34,96.33 34,96.33 24.67))",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 450352 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003957-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111302934
title: Exodus 23

description: [Text Description:] Fragment Exodus 23:8-10 ❧ [Medium:] Parchment ❧ [Script Note:] Jewish ❧ [Physical Object Description:] Parchment fragment ❧
DOI: 10.15468/dl.i6pbhe
title: Occurrence Download

description: A dataset containing 293 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is censo_suri2016_fauasoc_serfor"
 ]
}

 The dataset includes 293 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008076-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hd5puz
title: Occurrence Download

description: A dataset containing 9735 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia dealbata Link"
 ]
}

 The dataset includes 9735 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065545-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.