cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/yc0z1-s9f63
title: MS411-R1-16 / WM1652

description: to capture F-piligrid box: YWC095
description: <strong>Tilt Series Date:</strong> 2014-04-07</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strains from Carrie Shaffer</p>
<strong>Purification / Growth Conditions / Treatment:</strong> MS411-R1-16 & WM1652 grew to OD 0.6 in LB. Mix 2.5 ul of each onto grids on LB-agar plate, incubate 30 min for conjugation.</p>
<strong>Sample Preparation:</strong> Vitrobot settings: 100% humidity, 22.5 C, 3µl BSA treated 10 nm gold (100 ul gold+ 25 ul BSA, pellets from 6 tubes merged into ~30 ul final solution). Manual blot by Whatman 1 filter paper for 3 sec. Ethane/propane mix.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-04-07-19/rawdata/</p>20140407_YWC095_20018.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-04-07-19/rawdata/20140407_YWC095_20018.mrc"
        > <i class="download icon"></i> Download </a></p>

        20140407_YWC095_20018_part131_9.rec,  Reconstruction (Pixel Size 1.92 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-04-07-19/3dimage_41156/20140407_YWC095_20018_part131_9.rec"
        > <i class="download icon"></i> Download </a></p>

        20140407_YWC095_20018_DB.rec,  Reconstruction (Pixel Size 1.92 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-04-07-19/3dimage_41303/20140407_YWC095_20018_DB.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/37ana-3as48
title: Mycobacter smegmatis pneumonia

description: KP3 WT (S) M. smegmatis mc2_155
description: <strong>Tilt Series Date:</strong> 2013-09-09</p>
<strong>Data Taken By:</strong> Alasdair McDowall</p>
<strong>Species / Specimen:</strong> Mycobacterium smegmatis</p>
<strong>Strain:</strong> mc2_155</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSF Tomo  gatan K2  Raptor</p>
<strong>Collaborators and Roles:</strong> Koushik Paul / Eric Brown Genentech, Inc. 1 DNA Way South San Francisco, CA 94080 (650) 225-6248 Fax: (650) 225-1107</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Saunton Media (S)</p>
<strong>Sample Preparation:</strong> 3ul + 10nm Au R2/2 quantifoils 4.5 offset 1 blot 2s 1s drainsingle tilt. constant angular increment, step: 1. tilt range: (-60, 60).        dosage: 180/A2. defocus: -8um. magnification: 26000</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/amw2013-09-09-37/rawdata/</p>atlas10037.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/amw2013-09-09-37/rawdata/atlas10037.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas10037_full.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/amw2013-09-09-37/3dimage_30630/atlas10037_full.rec"
        > <i class="download icon"></i> Download </a></p>

        amw2013-09-09-37_slicer16494.png,  REZ near granule .  very faint flow lines in some limited locations .  -andrew, 515.1 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/amw2013-09-09-37_slicer16494.png"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.jbxz7b
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trochalopteron peninsulae",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045059-250811113504898/datasets/export for details.
DOI: 10.22002/rqmc9-p0a65
title: Myxococcus xanthus delta-tsaP

description: Grid box YWC121
description: <strong>Tilt Series Date:</strong> 2014-10-22</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain form Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 2 days in 200 rpm shaking CTT medium at 30 degrees without antibiotics. OD600=0.8</p>
<strong>Sample Preparation:</strong> Vitrobot (MK vi) settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 2.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-10-22-32/rawdata/</p>20141022_YWC121_30019.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-10-22-32/rawdata/20141022_YWC121_30019.mrc"
        > <i class="download icon"></i> Download </a></p>

        20141022_YWC121_30019.rec,  Reconstruction (Pixel Size 1.56 nm), 1.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-10-22-32/3dimage_47423/20141022_YWC121_30019.rec"
        > <i class="download icon"></i> Download </a></p>

        20141022_YWC121_30019_full.rec,  Reconstruction (Pixel Size 1.56 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-10-22-32/3dimage_47476/20141022_YWC121_30019_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/vy0er-50b63
title: Treponema primitia

description: Treponema primitia.  The rest of the files are in ~/Images/050802
description: <strong>Tilt Series Date:</strong> 2005-08-02</p>
<strong>Data Taken By:</strong> Gavin Murphy</p>
<strong>Species / Specimen:</strong> Treponema primitia</p>
<strong>Strain:</strong> ZAS-2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 30.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, bsoft</p>
<strong>Collaborators and Roles:</strong> Cells provided by Eric Matson, Jared Leadbetter; Data collected and processed by Gavin Murphy</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown in standard media around exponential growth.  Removed from anaerobic tube with syringe.  I am pretty sure I centrifuged it.</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity...</p>
  T6_050802_Thumb.jpg: * associated to rawdata T6_050802_ThumbRec.jpg: file associated to 3D Image #24 zap000.jpg: file associated to 3D Image #24
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-02-1/3dimage_24/</p>T6B2s.mrc,  Reconstruction (Pixel Size 0.0 nm), 244.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-02-1/3dimage_24/T6B2s.mrc"
        > <i class="download icon"></i> Download </a></p>

        T6B2sBB_24_part.pif,  Reconstruction (Pixel Size 0.0 nm), 222.2 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-02-1/3dimage_25/T6B2sBB_24_part.pif"
        > <i class="download icon"></i> Download </a></p>

        zap000.tif,  file associated to 3D Image #24, 2.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-02-1/file_65/zap000.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ckn42-mmz21
title: Hylemonella gracilis

description: Hylemonella gracilis.  The rest of the files are in ~/Images/070507.  The analysis consists of motor picking.  Some ctf correction.  Ctf correction never helped.
description: <strong>Tilt Series Date:</strong> 2007-05-07</p>
<strong>Data Taken By:</strong> Gavin Murphy</p>
<strong>Species / Specimen:</strong> Hylemonella gracilis</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 60.0°), step: 1.1°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: -8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, bsoft</p>
<strong>Collaborators and Roles:</strong> Cells provided by Jared Leadbetter; Data collected and processed by Gavin Murphy</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown in dilute media without salt.  0.5 g/L of Tryptone, 0.5 g/L YE. Cells grown for 2 days.  OD never gets above 0.005.  Centrifuged lightly e.g. 3500x g, then concentrated 50-100x fold.</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity...</p>
  H01_070507_tilt.jpg: * associated to rawdata H01_070507_rec.jpg: file associated to 3D Image #121
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2007-05-07-1/rawdata/</p>H1_S672G1_34k80e8d.mrc.gz,  Tilt Series (Pixel Size 0.64 nm), 614.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2007-05-07-1/rawdata/H1_S672G1_34k80e8d.mrc.gz"
        > <i class="download icon"></i> Download </a></p>

        H1b2_0.32.mrc,  Reconstruction (Pixel Size 0.0 nm), 170.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2007-05-07-1/3dimage_121/H1b2_0.32.mrc"
        > <i class="download icon"></i> Download </a></p>

        H1b2_0.46_44_part.pif,  Reconstruction (Pixel Size 0.0 nm), 4.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2007-05-07-1/3dimage_122/H1b2_0.46_44_part.pif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/czf4k-6k135
title: Myxococcus xanthus delta-tsaP

description: Grid box YWC121
description: <strong>Tilt Series Date:</strong> 2014-10-22</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain form Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 2 days in 200 rpm shaking CTT medium at 30 degrees without antibiotics. OD600=0.8</p>
<strong>Sample Preparation:</strong> Vitrobot (MK vi) settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 2.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-10-22-24/rawdata/</p>20141022_YWC121_30011.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-10-22-24/rawdata/20141022_YWC121_30011.mrc"
        > <i class="download icon"></i> Download </a></p>

        20141022_YWC121_30011.rec,  Reconstruction (Pixel Size 1.56 nm), 1.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-10-22-24/3dimage_47408/20141022_YWC121_30011.rec"
        > <i class="download icon"></i> Download </a></p>

        20141022_YWC121_30011_full.rec,  Reconstruction (Pixel Size 1.56 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-10-22-24/3dimage_47467/20141022_YWC121_30011_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dm5z8-29j22
title: Treponema primitia

description: Treponema primitia.  The rest of the files are in ~/Images/050911
description: <strong>Tilt Series Date:</strong> 2005-09-11</p>
<strong>Data Taken By:</strong> Gavin Murphy</p>
<strong>Species / Specimen:</strong> Treponema primitia</p>
<strong>Strain:</strong> ZAS-2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 30.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, bsoft</p>
<strong>Collaborators and Roles:</strong> Cells provided by Eric Matson, Jared Leadbetter; Data collected and processed by Gavin Murphy</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown in standard media around exponential growth.  Removed from anaerobic tube with syringe. Uncentrifuged.</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity...</p>
  T2_050911_rec.jpg: file associated to 3D Image #47 050911-T2-Pili-Ortho.jpg: file associated to 3D Image #47
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-09-11-2/3dimage_47/</p>T2B2s.mrc,  Reconstruction (Pixel Size 0.0 nm), 394.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-09-11-2/3dimage_47/T2B2s.mrc"
        > <i class="download icon"></i> Download </a></p>

        T2B2s_28_part.pif,  Reconstruction (Pixel Size 0.0 nm), 352.3 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-09-11-2/3dimage_48/T2B2s_28_part.pif"
        > <i class="download icon"></i> Download </a></p>

        050911-T2-Pili-Ortho.tif,  file associated to 3D Image #47, 2.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-09-11-2/file_114/050911-T2-Pili-Ortho.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/0ybah-rp371
title: Hylemonella gracilis

description: Hylemonella gracilis.  The rest of the files are in ~/Images/061020.  The analysis consists of motor picking.  Some ctf correction.  Ctf correction never helped.
description: <strong>Tilt Series Date:</strong> 2006-10-20</p>
<strong>Data Taken By:</strong> Gavin Murphy</p>
<strong>Species / Specimen:</strong> Hylemonella gracilis</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 60.0°), step: 0.9°, constant angular increment, dosage: 75.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, bsoft</p>
<strong>Collaborators and Roles:</strong> Cells provided by Jared Leadbetter; Data collected and processed by Gavin Murphy</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown in dilute media without salt.  0.5 g/L of Tryptone, 0.5 g/L YE. Cells grown for 2 days.  OD never gets above 0.005.  Centrifuged lightly e.g. 3500x g, then concentrated 50-100x fold.</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity...</p>
  H19_061020_tilt.jpg: * associated to rawdata H19_061020_rec.jpg: file associated to 3D Image #112
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2006-10-20-9/rawdata/</p>A19_S474G4_34k12d75e4nm.mrc,  Tilt Series (Pixel Size 0.67 nm), 1.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2006-10-20-9/rawdata/A19_S474G4_34k12d75e4nm.mrc"
        > <i class="download icon"></i> Download </a></p>

        A19NoCTFrec0.34.mrc,  Reconstruction (Pixel Size 0.0 nm), 320.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2006-10-20-9/3dimage_112/A19NoCTFrec0.34.mrc"
        > <i class="download icon"></i> Download </a></p>

        A19NoCTFhigh_44_part.pif,  Reconstruction (Pixel Size 0.0 nm), 6.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2006-10-20-9/3dimage_113/A19NoCTFhigh_44_part.pif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/30sa8-hbr15
title: Hylemonella gracilis

description: Hylemonella gracilis.  The rest of the files are in ~/Images/061020.  The analysis consists of motor picking.  Some ctf correction.  Ctf correction never helped.
description: <strong>Tilt Series Date:</strong> 2006-10-20</p>
<strong>Data Taken By:</strong> Gavin Murphy</p>
<strong>Species / Specimen:</strong> Hylemonella gracilis</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 60.0°), step: 0.9°, constant angular increment, dosage: 75.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, bsoft</p>
<strong>Collaborators and Roles:</strong> Cells provided by Jared Leadbetter; Data collected and processed by Gavin Murphy</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown in dilute media without salt.  0.5 g/L of Tryptone, 0.5 g/L YE. Cells grown for 2 days.  OD never gets above 0.005.  Centrifuged lightly e.g. 3500x g, then concentrated 50-100x fold.</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity...</p>
  H18_061020_tilt.jpg: * associated to rawdata H18_061020_rec.jpg: file associated to 3D Image #109 gme2006-10-20-8_slicer5148.jpg: Chemoreceptors gme2006-10-20-8_slicer5157.jpg: unknown
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2006-10-20-8/rawdata/</p>A18a_S474G4_34k12d75e4nm.mrc,  Tilt Series (Pixel Size 0.67 nm), 1.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2006-10-20-8/rawdata/A18a_S474G4_34k12d75e4nm.mrc"
        > <i class="download icon"></i> Download </a></p>

        A18NoCTFrec0.30.mrc,  Reconstruction (Pixel Size 0.0 nm), 368.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2006-10-20-8/3dimage_109/A18NoCTFrec0.30.mrc"
        > <i class="download icon"></i> Download </a></p>

        A18NoCTFhigh_44_part.pif,  Reconstruction (Pixel Size 0.0 nm), 9.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2006-10-20-8/3dimage_110/A18NoCTFhigh_44_part.pif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/3h6vj-wjn81
title: Hylemonella gracilis

description: Hylemonella gracilis.  The rest of the files are in ~/Images/061020.  The analysis consists of motor picking.  Some ctf correction.  Ctf correction never helped.
description: <strong>Tilt Series Date:</strong> 2006-10-20</p>
<strong>Data Taken By:</strong> Gavin Murphy</p>
<strong>Species / Specimen:</strong> Hylemonella gracilis</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 60.0°), step: 0.9°, constant angular increment, dosage: 75.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, bsoft</p>
<strong>Collaborators and Roles:</strong> Cells provided by Jared Leadbetter; Data collected and processed by Gavin Murphy</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown in dilute media without salt.  0.5 g/L of Tryptone, 0.5 g/L YE. Cells grown for 2 days.  OD never gets above 0.005.  Centrifuged lightly e.g. 3500x g, then concentrated 50-100x fold.</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity...</p>
  H10_061020_tilt.jpg: * associated to rawdata H10_061020_rec.jpg: file associated to 3D Image #97 gme2006-10-20-4_slicer5119.jpg: chemoreceptor array
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2006-10-20-4/rawdata/</p>A10_S474G4_34k12d75e4nm.mrc,  Tilt Series (Pixel Size 0.67 nm), 1.2 GB  
        
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        A10NoCTFrec0.34.mrc,  Reconstruction (Pixel Size 0.0 nm), 390.7 MB  
        
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        A10NoCTFhigh_44_part.pif,  Reconstruction (Pixel Size 0.0 nm), 5.5 MB  
        
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