cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7617173.v1
title: Additional file 2: of Comprehensive anticancer drug response prediction based on a simple cell line-drug complex network model

description: Table S2. The distance matrix of drugs in GDSC dataset. (CSV 11 kb)
DOI: 10.6084/m9.figshare.7617185
title: Additional file 3: of Comprehensive anticancer drug response prediction based on a simple cell line-drug complex network model

description: Table S3. Prediction accuracy, sensitivity, specificity and goodness of fit for CCLE dataset. (CSV 6 kb)
DOI: 10.6084/m9.figshare.7617185.v1
title: Additional file 3: of Comprehensive anticancer drug response prediction based on a simple cell line-drug complex network model

description: Table S3. Prediction accuracy, sensitivity, specificity and goodness of fit for CCLE dataset. (CSV 6 kb)
DOI: 10.6084/m9.figshare.7617194
title: Additional file 4: of Comprehensive anticancer drug response prediction based on a simple cell line-drug complex network model

description: Table S4. Prediction accuracy, sensitivity, specificity and goodness of fit for GDSC dataset. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.7617194.v1
title: Additional file 4: of Comprehensive anticancer drug response prediction based on a simple cell line-drug complex network model

description: Table S4. Prediction accuracy, sensitivity, specificity and goodness of fit for GDSC dataset. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.13908660
title: Characterization of a novel levopimaradiene synthase gene responsible for the biosynthesis of terpene trilactones in <i>Ginkgo biloba</i>

description: Terpene trilactones (TTLs) are the main medicinal compounds of <i>Ginkgo biloba</i>. Levopimaradiene synthase (LPS) is the crucial enzyme that catalyzes TTLs biosynthesis in <i>G. biloba</i>. In this study, a novel LPS gene (designated as <i>GbLPS2</i>) was cloned from <i>G. biloba</i> leaves. The open reading frame of <i>GbLPS2</i> gene was 2520 bp in length, encoding a predicted polypeptide of 840 amino acids. Phylogenetic analysis revealed that the GbLPS2 was highly homologous with reported LPS proteins in other plants. On the basis of the genomic DNA (gDNA) template, a 4308 bp gDNA sequence of <i>GbLPS2</i> and a 913 bp promoter sequence were amplified. <i>Cis</i>-acting elements in promoter analysis indicated that <i>GbLPS2</i> could be regulated by methyl jasmonate (MeJA) and abscisic acid (ABA). Tissue-specific expression analysis revealed that <i>GbLPS2</i> was mainly expressed in roots and ovulate strobilus. MeJA treatment could significantly induce the expression level of <i>GbLPS2</i> and increase the content of TTLs. This study illustrates the structure and the tissue-specific expression pattern of <i>GbLPS2</i> and demonstrates that exogenous hormones regulated the expression of <i>GbLPS2</i> and TTL content in <i>G. biloba</i>. Our results provide a target gene for the enhancement of TTL content in <i>G. biloba</i> via genetic engineering.
DOI: 10.6084/m9.figshare.13908660.v1
title: Characterization of a novel levopimaradiene synthase gene responsible for the biosynthesis of terpene trilactones in <i>Ginkgo biloba</i>

description: Terpene trilactones (TTLs) are the main medicinal compounds of <i>Ginkgo biloba</i>. Levopimaradiene synthase (LPS) is the crucial enzyme that catalyzes TTLs biosynthesis in <i>G. biloba</i>. In this study, a novel LPS gene (designated as <i>GbLPS2</i>) was cloned from <i>G. biloba</i> leaves. The open reading frame of <i>GbLPS2</i> gene was 2520 bp in length, encoding a predicted polypeptide of 840 amino acids. Phylogenetic analysis revealed that the GbLPS2 was highly homologous with reported LPS proteins in other plants. On the basis of the genomic DNA (gDNA) template, a 4308 bp gDNA sequence of <i>GbLPS2</i> and a 913 bp promoter sequence were amplified. <i>Cis</i>-acting elements in promoter analysis indicated that <i>GbLPS2</i> could be regulated by methyl jasmonate (MeJA) and abscisic acid (ABA). Tissue-specific expression analysis revealed that <i>GbLPS2</i> was mainly expressed in roots and ovulate strobilus. MeJA treatment could significantly induce the expression level of <i>GbLPS2</i> and increase the content of TTLs. This study illustrates the structure and the tissue-specific expression pattern of <i>GbLPS2</i> and demonstrates that exogenous hormones regulated the expression of <i>GbLPS2</i> and TTL content in <i>G. biloba</i>. Our results provide a target gene for the enhancement of TTL content in <i>G. biloba</i> via genetic engineering.
DOI: 10.6084/m9.figshare.7617248
title: Additional file 2: of Cluster analysis of replicated alternative polyadenylation data using canonical correlation analysis

description: Hub genes for all gene modules obtained from PASCCA (XLSX 107 kb)
DOI: 10.6084/m9.figshare.7617248.v1
title: Additional file 2: of Cluster analysis of replicated alternative polyadenylation data using canonical correlation analysis

description: Hub genes for all gene modules obtained from PASCCA (XLSX 107 kb)
DOI: 10.5281/zenodo.7569458
title: Data and code for figures: Kinetic Inductive Electromechanical Transduction for Nanoscale Force Sensing

description: This directory contains the datasets and code (if applicable) for generating the figures in the research article "Kinetic Inductive Electromechanical Transduction for Nanoscale Force Sensing", Physical Review Applied 20, 024022 (2023).
DOI: 10.5281/zenodo.7569459
title: Data and code for figures: Kinetic Inductive Electromechanical Transduction for Nanoscale Force Sensing

description: This directory contains the datasets and code (if applicable) for generating the figures in the research article "Kinetic Inductive Electromechanical Transduction for Nanoscale Force Sensing", Physical Review Applied 20, 024022 (2023).
DOI: 10.6084/m9.figshare.14432936
title: Additional file 1 of Roundup causes embryonic development failure and alters metabolic pathways and gut microbiota functionality in non-target species

description: Additional file 1.
DOI: 10.6084/m9.figshare.14432936.v1
title: Additional file 1 of Roundup causes embryonic development failure and alters metabolic pathways and gut microbiota functionality in non-target species

description: Additional file 1.
DOI: 10.6084/m9.figshare.14432939.v2
title: Additional file of Roundup causes embryonic development failure and alters metabolic pathways and gut microbiota functionality in non-target species

description: Additional file of Roundup causes embryonic development failure and alters metabolic pathways and gut microbiota functionality in non-target species
DOI: 10.6084/m9.figshare.14433071.v1
title: Additional file of CD44, a marker of cancer stem cells, is positively correlated with PD-L1 expression and immune cells infiltration in lung adenocarcinoma

description: Additional file of CD44, a marker of cancer stem cells, is positively correlated with PD-L1 expression and immune cells infiltration in lung adenocarcinoma
DOI: 10.6084/m9.figshare.14433071
title: Additional file of CD44, a marker of cancer stem cells, is positively correlated with PD-L1 expression and immune cells infiltration in lung adenocarcinoma

description: Additional file of CD44, a marker of cancer stem cells, is positively correlated with PD-L1 expression and immune cells infiltration in lung adenocarcinoma
DOI: 10.5281/zenodo.10665444
title: Data and code for figures: Design, fabrication and characterization of kinetic-inductive force sensors for scanning probe applications

description: This directory contains the datasets, code (if applicable) for measurement libraries, data processing and figure generation for the research article "Design, fabrication and characterization of kinetic-inductive force sensors for scanning probe applications", Beilstein J. Nanotechnol. 2024, 15, 242-255.
DOI: 10.5281/zenodo.8246257
title: Data and code for figures: Design, fabrication and characterization of kinetic-inductive force sensors for scanning probe applications

description: This directory contains the datasets, code (if applicable) for measurement libraries, data processing and figure generation for the research article "Design, fabrication and characterization of kinetic-inductive force sensors for scanning probe applications", Beilstein J. Nanotechnol. 2024, 15, 242-255.
DOI: 10.5281/zenodo.8246258
title: Data and code for figures: Design, fabrication and characterization of kinetic-inductive force sensors for scanning probe applications

description: This directory contains the datasets, code (if applicable) for measurement libraries, data processing and figure generation for the research article "Design, fabrication and characterization of kinetic-inductive force sensors for scanning probe applications".
DOI: 10.6084/m9.figshare.14433089
title: Additional file of Clinical and molecular characteristics of 69 Chinese patients with ornithine transcarbamylase deficiency

description: Additional file of Clinical and molecular characteristics of 69 Chinese patients with ornithine transcarbamylase deficiency
DOI: 10.6084/m9.figshare.14433089.v1
title: Additional file of Clinical and molecular characteristics of 69 Chinese patients with ornithine transcarbamylase deficiency

description: Additional file of Clinical and molecular characteristics of 69 Chinese patients with ornithine transcarbamylase deficiency
DOI: 10.6084/m9.figshare.14433155.v1
title: Additional file 3 of Revealing active components, action targets and molecular mechanism of Gandi capsule for treating diabetic nephropathy based on network pharmacology strategy

description: Additional file 3. Network analysis data.
DOI: 10.6084/m9.figshare.14433155
title: Additional file 3 of Revealing active components, action targets and molecular mechanism of Gandi capsule for treating diabetic nephropathy based on network pharmacology strategy

description: Additional file 3. Network analysis data.
DOI: 10.6084/m9.figshare.14433158.v1
title: Additional file 4 of Revealing active components, action targets and molecular mechanism of Gandi capsule for treating diabetic nephropathy based on network pharmacology strategy

description: Additional file 4. Western Blot.
DOI: 10.6084/m9.figshare.14433158
title: Additional file 4 of Revealing active components, action targets and molecular mechanism of Gandi capsule for treating diabetic nephropathy based on network pharmacology strategy

description: Additional file 4. Western Blot.
DOI: 10.6084/m9.figshare.7617443
title: Additional files 1: of Dispersal route of the Asian house rat (Rattus tanezumi) on mainland China: insights from microsatellite and mitochondrial DNA

description: Table S1. Microsatellite loci of R. tanezumi and primers used in this research. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7617443.v1
title: Additional files 1: of Dispersal route of the Asian house rat (Rattus tanezumi) on mainland China: insights from microsatellite and mitochondrial DNA

description: Table S1. Microsatellite loci of R. tanezumi and primers used in this research. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7617440
title: Additional file 1: of Circulating microRNA-92a level predicts acute coronary syndrome in diabetic patients with coronary heart disease

description: Figure S1. Correlation of miR-92a and hemodynamics parameters. Figure S2. Correlation of miR-92a level and blood glucose. Figure S3. Correlation of miR-92a level and blood lipid. Figure S4. Data from ROC curves. (ZIP 2509 kb)
DOI: 10.6084/m9.figshare.7617440.v1
title: Additional file 1: of Circulating microRNA-92a level predicts acute coronary syndrome in diabetic patients with coronary heart disease

description: Figure S1. Correlation of miR-92a and hemodynamics parameters. Figure S2. Correlation of miR-92a level and blood glucose. Figure S3. Correlation of miR-92a level and blood lipid. Figure S4. Data from ROC curves. (ZIP 2509 kb)
DOI: 10.6084/m9.figshare.7617449
title: Additional files 2: of Dispersal route of the Asian house rat (Rattus tanezumi) on mainland China: insights from microsatellite and mitochondrial DNA

description: Table S2. List of haplotypes used in the phylogram of Fig. 3, haplotype 39â 129 were found in downloaded sequences from Genbank. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7617449.v1
title: Additional files 2: of Dispersal route of the Asian house rat (Rattus tanezumi) on mainland China: insights from microsatellite and mitochondrial DNA

description: Table S2. List of haplotypes used in the phylogram of Fig. 3, haplotype 39â 129 were found in downloaded sequences from Genbank. (XLSX 14 kb)
DOI: 10.21227/smd7-js78
title: TDoA OWP Grid measurements raw data

description: Raw datasets of PDA10A receiver signals acquired with MSO2024 oscilloscope for Time Difference of Arrival Optical Wireless Positioning measurements.The data is stored in csv, numpy and pickle format to be easily imported and processed in Python.The first dataset consists of measurements on a grid without reflections.The second dataset are identical measurements but with a corner geometry at the fourth receiver creating diffuse reflections.
DOI: 10.6084/m9.figshare.7617455
title: Additional files 3: of Dispersal route of the Asian house rat (Rattus tanezumi) on mainland China: insights from microsatellite and mitochondrial DNA

description: Table S3. Genetic variability at nine microsatellite loci in R. tanezumi populations from China. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7617455.v1
title: Additional files 3: of Dispersal route of the Asian house rat (Rattus tanezumi) on mainland China: insights from microsatellite and mitochondrial DNA

description: Table S3. Genetic variability at nine microsatellite loci in R. tanezumi populations from China. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7617461
title: Additional files 4: of Dispersal route of the Asian house rat (Rattus tanezumi) on mainland China: insights from microsatellite and mitochondrial DNA

description: Table S4. Pairwise genetic distance (FST) and gene flow (Nm) for 15 populations based on microsatellite data. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7617461.v1
title: Additional files 4: of Dispersal route of the Asian house rat (Rattus tanezumi) on mainland China: insights from microsatellite and mitochondrial DNA

description: Table S4. Pairwise genetic distance (FST) and gene flow (Nm) for 15 populations based on microsatellite data. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7617470
title: Additional files 5: of Dispersal route of the Asian house rat (Rattus tanezumi) on mainland China: insights from microsatellite and mitochondrial DNA

description: Table S5. The haplotype networks of COI and Dloop sequences. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.7617470.v1
title: Additional files 5: of Dispersal route of the Asian house rat (Rattus tanezumi) on mainland China: insights from microsatellite and mitochondrial DNA

description: Table S5. The haplotype networks of COI and Dloop sequences. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.17054649
title: Additional file 2 of Systematic analysis of the lysine malonylome in Sanghuangporus sanghuang

description: Additional file 2: Table S1. The identified malonylated sites in S. sanghuang. Table S2. Protein annotation analysis. Table S3. Analysis the sequence motifs of the malonylpeptides. Table S4. GO functional annotation of the malonylproteins. Table S5. The modified proteins based on KEGG pathway enrichment analysis. Table S6. The malonylated proteins based on domain enrichment analysis. Table S7. The proteins obtained from PPI network analysis. Table S8. The 26 enzymes associated with triterpene and polysaccharide biosynthesis were found to be malonylated. Table S9. BH correction (FDR) of the GO enrichment. Table S10. BH correction (FDR) of the KEGG enrichment. Table S11. BH correction (FDR) of the protein domain enrichment.
DOI: 10.6084/m9.figshare.17054646
title: Additional file 1 of Systematic analysis of the lysine malonylome in Sanghuangporus sanghuang

description: Additional file 1: Fig. S1. The MS/MS spectra of examples of malonyl peptides. Fig. S2. GO-based enrichment analysis. Fig. S3. Domain enrichment analysis of the malonylproteins.
DOI: 10.6084/m9.figshare.17054646.v1
title: Additional file 1 of Systematic analysis of the lysine malonylome in Sanghuangporus sanghuang

description: Additional file 1: Fig. S1. The MS/MS spectra of examples of malonyl peptides. Fig. S2. GO-based enrichment analysis. Fig. S3. Domain enrichment analysis of the malonylproteins.
DOI: 10.6084/m9.figshare.17054649.v1
title: Additional file 2 of Systematic analysis of the lysine malonylome in Sanghuangporus sanghuang

description: Additional file 2: Table S1. The identified malonylated sites in S. sanghuang. Table S2. Protein annotation analysis. Table S3. Analysis the sequence motifs of the malonylpeptides. Table S4. GO functional annotation of the malonylproteins. Table S5. The modified proteins based on KEGG pathway enrichment analysis. Table S6. The malonylated proteins based on domain enrichment analysis. Table S7. The proteins obtained from PPI network analysis. Table S8. The 26 enzymes associated with triterpene and polysaccharide biosynthesis were found to be malonylated. Table S9. BH correction (FDR) of the GO enrichment. Table S10. BH correction (FDR) of the KEGG enrichment. Table S11. BH correction (FDR) of the protein domain enrichment.
DOI: 10.15468/dl.kxr966
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hynobius amjiensis Gu, 1992"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000848-150811131857512/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmq588
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Tachymenis chilensis (Schlegel, 1837)"
 ]
}

 The dataset includes 221 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0318224-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3kcmt7
title: Occurrence Download

description: A dataset containing 37132 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Procyon Storr, 1780"
 ]
}

 The dataset includes 37132 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0246244-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gyn99a
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "TaxonKey is Grus americana (Linnaeus, 1758)"
 ]
}

 The dataset includes 43 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071502-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.poy92c
title: Occurrence Download

description: A dataset containing 2769 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Relative abundance of planktic foraminifera in the 120 kyr time slice reconstruction of sediment core V28-238"
 ]
}

 The dataset includes 2769 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000849-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5npsu3
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Nothoscordum Kunth"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036191-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z44s2h
title: Occurrence Download

description: A dataset containing 383900 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Betula pubescens Ehrh."
 ]
}

 The dataset includes 383900 records from 620 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0243949-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wwvlnr
title: Occurrence Download

description: A dataset containing 25331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true",
 "TaxonKey is Plebejus argus (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 25331 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006813-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fbnuvf
title: Occurrence Download

description: A dataset containing 1835708 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum invalid",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate reprojected",
 "Issue is Coordinate accuracy invalid",
 "Issue is Coordinate precision/uncertainty mismatch",
 "Issue is Footprint SRS invalid",
 "Issue is Footprint WKT invalid",
 "Issue is Country mismatch",
 "Issue is Country invalid",
 "Issue is Country derived from coordinates",
 "Issue is Continent country mismatch",
 "Issue is Continent invalid",
 "Issue is Continent derived from coordinates",
 "Issue is Depth not metric",
 "Issue is Depth unlikely",
 "Issue is Depth min max swapped",
 "Issue is Depth non numeric",
 "Issue is Elevation unlikely",
 "Issue is Elevation min max swapped",
 "Issue is Elevation not metric",
 "Issue is Elevation non numeric",
 "Issue is Modified date invalid",
 "Issue is Modified date unlikely",
 "Issue is Identified date invalid",
 "Issue is Type status invalid",
 "Issue is Multimedia date invalid",
 "Issue is Multimedia URI invalid",
 "Issue is References URI invalid",
 "Issue is Error during interpretation",
 "Issue is Occurrence status inferred from individual count",
 "Issue is ccurrence status inferred from basis of record",
 "Issue is Georeferenced date unlikely",
 "Issue is Georeferenced date invalid",
 "Issue is Ambiguous institution",
 "Issue is Ambiguous collection",
 "Issue is Institution match none",
 "Issue is Collection match none",
 "Issue is Institution match fuzzy",
 "Issue is Collection match fuzzy",
 "Issue is Institution collection mismatch",
 "Issue is Possibly on loan",
 "Issue is Different owner institution"
 ]
 },
 {
 "or" : [
 "License is CC-BY 4.0",
 "License is CC-BY-NC 4.0",
 "License is CC0 1.0"
 ]
 },
 "OccurrenceStatus is Present",
 "TaxonKey is Squamata",
 "Year 1980-2021"
 ]
}

 The dataset includes 1835708 records from 1366 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044229-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.