cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19447268.v1
title: Supplementary Material for: A Case of Bladder Large Cell Carcinoma with Review of the Literature

description: Neuroendocrine (NE) tumors of the bladder are infrequent. Among them, large cell NE tumor has been outlined only in case reports and short case series, which describes them as aggressive malignancies with dismal prognosis requiring a multidisciplinary approach. The case of an 82-year-old patient with muscle-invasive large cell NE carcinoma of the bladder associated with urothelial carcinoma in situ is presented. Despite combined treatment modality, relapse with metastatic disease was detected 12.5 months after the initial diagnosis. Thereafter, we review several published cases, and results of the collected data are compared with the largest studies published on this topic.
DOI: 10.6084/m9.figshare.7683938.v1
title: Data files associated with the manuscript, "Adaptive Genetic Variation Underlies Biocomplexity of Atlantic Cod in the Gulf of Maine and on Georges Bank."

description: Included are VCFs for the SNP datasets used for analysis and a supplementary file detailing Fst outlier SNPs. There is also a population map, where the individual IDs used in the VCFs are mapped to their sampling location. For full details on how these datasets were generated, see the manuscript.<br>800k_reads.filtered.allsnps.vcf = full SNP dataset: 3128 SNPs.<br>800k_reads.putatively_neutral.recode.vcf = putatively neutral SNP dataset: 2689 SNPs.<br><br>800k_reads.filtered.allsnps.max-missing95.recode.vcf = stringent SNP dataset: 1660 SNPs.<br><br>popmap.txt = file mapping individual IDs to sampling locations.<br>Supplementary_File_outlierSNPs.xlsx = excel spreadsheet with details of the 47 outlier SNPs identified by BayeScan.<br><br><br>
DOI: 10.17632/4jdtsgdkdz
title: The ill-defined π(AlFeMgSi) phase intermetallics formed in an automotive Al-Si-Mg alloy

description: Fe-containing quaternary π(AlFeMgSi) phase is one of the most important harmful intermetallic compounds in Al-Si-based automotive alloys. Understanding its structure and relation with another intermetallic phase AlFeSi is critical for improving the toughness of the alloys. In the present study, advanced electron microscopy was employed to unveil the defective or ill-defined structures of the π(AlFeMgSi) phase intermetallics. Experimental atomic-resolution images from two projection directions confirmed that the perfect structure of π(AlFeMgSi) phase has a composition of Al9FeMg3Si5 and a space group of P-62m. Interesting is that massive planar defects exist in π(AlFeMgSi) intermetallic compounds. It is revealed that these defects are poor of Mg. Our study suggests a probable mechanism for the π(AlFeMgSi) phase to transform into the AlFeSi phase, which may provide a clue for tuning the quantity or amount of harmful Fe-containing intermetallic compounds in Al alloys.
DOI: 10.17632/pjrs3rrnfc
title: Phase I clinical trial dataset: naked DNA SARS-CoV-2 Omicron BA.2 booster vaccine Alveavax-v1.2 against Janssen Ad26.COV2.S comparator, NCT05844202

description: Safety and Immunogenicity of a DNA SARS-CoV-2 vaccine (Alveavax-v1.2): Results of a first-in-human, open-label, active-controlled, randomized dose-finding study of intradermal and subcutaneous application in primary Ad26.COV2.S vaccinated healthy individuals. We conducted a Phase I open-label, active-controlled, randomized safety and dose-finding study for the naked DNA Omicron BA.2 booster vaccine Alveavax-v1.2. Healthy participants previously immunized with a single Janssen Ad26.COV2.S vaccine were recruited from seven non-hospital study sites in South Africa. Primary outcome was safety and tolerability on day 28 after vaccination; secondary endpoints were humoral immunogenicity, clinical efficacy and success rate of intradermal (ID) injections. A central randomization system allocated participants into the groups in blocks ranging from 1 to 5: low dose - 0.5 mg ID; standard dose - 2 mg ID; high dose - 8 mg (4 ID of 2 mg each); subcutaneous injection - 8 mg; control - Janssen Ad26.COV2.S booster as a single intramuscular injection. All analyses were based on a modified Intent-To-Treat (mITT) population. ClinicalTrials.gov Identifier: NCT05844202. As this was a phase I study, all data were analyzed descriptively without a formal statistical hypothesis and sample sizes were not based on a statistical power calculation. Figure 1 illustrates the participants included in the safety and immunogenicity analyses. The safety population was the set of all study participants who were administered with a dose of the vaccine candidate. Participants were grouped as treated. All enrolled participants who received a study vaccine and experienced at least one post-baseline immunogenicity readout comprised the modified intent-to-treat (mITT) population. Missing or non- evaluable measurements were not replaced. The mITT and Safety populations were identical. The mITT population was used instead of the per protocol population for the immunogenicity analyses as the differences to the Janssen control were small and the former included more participants. Categorical variables were summarized as frequencies and percentages. Continuous variables were summarized using descriptive statistics (number of participants with an observation [n], mean, standard deviation [SD], median, and range). Where partial dates (missing day or missing day and month) were recorded on the electronic case report form (CRF) and where these could not be resolved by queries, dates were estimated for the purpose of calculating durations. Statistical analysis was performed using SAS® software (version 9.4 or higher; SAS Institute Inc., USA). AEs were coded using MedDRA version 25.1. Coding included the system organ class and preferred term.
DOI: 10.6084/m9.figshare.21841290.v1
title: Supplementary Material for: Neuromechanical Dimorphism of Hypoglycemic Effect of Electroacupuncture

description: Introduction: Eletroacupuncture (EA) has a favorable impact on blood glucose stability. Blood glucose homeostasis is linked to sexual dimorphism. The majority of research has, however, focused on male participants, and sex differences have not been adequately taken into account. Methods: Here, we investigated how EA intervention affected pancreatic metabolic stress and explored if there were any sex-related changes in the maintenance of pancreatic function following intraperitoneal injection of a 10 g/kg glucose solution. Results: The transient receptor potential vanilloid 1 (TRPV1) -calcitonin gene-related peptide (CGRP)-β cell pathway of the male pancreas is vital to maintain glucose metabolism in mice. In contrast, there is a sex bias in TRPV1, which implies that female mice have additional routes for preserving glucose homeostasis. EA is ineffective on Trpv1-/- male mice also revealed that TRPV1 in male mice served as a crucial mediator for the EA control of blood glucose. Meanwhile, the sympathetic marker tyrosine hydroxylase showed higher expression in the male pancreas, while the cholinergic marker choline acetyltransferase is expressed predominantly in female mice. Injecting γ-aminobutyric acid into the paraventricular nucleus of male mice caused a disruption in blood glucose and a lack of response to EA. It verified that male mice had a more pronounced sympathetic innervation of the pancreas than female mice. Conclusion: Our research has demonstrated that the TRPV1 sensory afferent nerve and sympathetic efferent nerve are capable of maintaining glucose homeostasis, exhibiting a distinct sexual dimorphism. Furthermore, this regulation is contingent on the EA effect.
DOI: 10.17632/gswdbbpb4r
title: GEE Code for Mapping High Resolution Cropland Distribution In Diverse Agroecological Zones

description: Having updated knowledge of cropland extent is essential for crop monitoring and food security early warning. Previous research has proposed different methods and adopted various datasets for mapping cropland areas at regional to global scales. However, most approaches did not consider the characteristics of farming systems and applied the same classification method in different agroecological zones (AEZs). Furthermore, the acquisition of in situ samples for classification training remains challenging. To address these knowledge gaps and challenges, this study applied a zone-specific classification by comparing four classifiers (random forest, the support vector machine (SVM), the classification and regression tree (CART) and minimum distance) for cropland mapping over four different AEZs in the Zambezi River basin (ZRB). Landsat-8 and Sentinel-2 data and derived indices were used and synthesized to generate thirty-five layers for classification on the Google Earth Engine platform. Training samples were derived from three existing landcover datasets to minimize the cost of sample acquisitions over the large area. The final cropland map was generated at a 10 m resolution. 

The information here presented was imported from a published paper with the title ''Comparison of Different Cropland Classification Methods under Diversified Agroecological Conditions in the Zambezi River Basin'' which its reference is shown below. The dataset here presented was created based on the results of this study.

Bofana, J.; Zhang, M.; Nabil, M.; Wu, B.; Tian, F.; Liu, W.; Zeng, H.; Zhang, N.; Nangombe, S.S.; Cipriano, S.A.; Phiri, E.; Mushore, T.D.; Kaluba, P.; Mashonjowa, E.; Moyo, C. Comparison of Different Cropland Classification Methods under Diversified Agroecological Conditions in the Zambezi River Basin. Remote Sens. 2020, 12, 2096. https://doi.org/10.3390/rs12132096
DOI: 10.17632/y3wzxs6jy3
title: Data for: Graded (Al)GaInP Window-Emitter Structures for Improved Short-Wavelength Current Collection

description: Device modeling data developed via simple analytical model predicting IQE performance metrics, photogeneration rates, and collection probability of various graded structures implemented on Ga0.51In0.49P solar cells. Experimental IQE data of actual devices produced using compositionally-graded digital alloys grown atop Ga0.51In0.49P solar cells grown via MBE.
DOI: 10.6084/m9.figshare.21119359.v1
title: Mammalian body size evolution was shaped by habitat transitions as an indirect effect of climate change

description: All fossil data are available at the NOW database (https://nowdatabase.org). The summary datasets of body size diversity and genus richness in ecographic groups by time bin, the R scripts for filtering the data and analyzing the Bayesian linear models and the posterior samples from all the models are archived.
DOI: 10.6084/m9.figshare.697532.v1
title: Subset of MODIS 250m MOD13Q1 NDVI data

description: A small section of MODIS NDVI data from near Normanton, Queensland Australia.
DOI: 10.17632/f7xnz3ns84
title: High-fiber Diet Mitigates Maternal Obesity-induced Cognitive and Social Dysfunction in the Offspring via Gut-brain Axis

description: Maternal obesity has been reported to be related to neurodevelopmental disorders in the offspring. However, the underlying mechanisms and effective interventions remain unclear. The present cross-sectional study with 778 children aged 7 to 14 years in two cities in China indicated that maternal obesity is strongly associated with children’s lower cognition and sociality. Moreover, it has been demonstrated that maternal obesity in mice disrupted the behavior and gut microbiome in offspring, both of which were restored by a high-fiber diet in either dams or offspring. Co-housing and feces microbiota transplantation experiments revealed a causal relationship between microbiota and behavioral changes. Moreover, treatment with the microbiota-derived short-chain fatty acids also alleviated the behavioral deficits in the offspring of obese dams. Together, our study indicated that the microbiota-metabolites-brain axis may underlie maternal obesity-induced cognitive and social dysfunctions, and that high dietary fiber intake could be a promising intervention.
DOI: 10.6084/m9.figshare.20626806.v2
title: Process-related GHG emissions in China

description: This is the data file for review of the manuscript "China’s process-related greenhouse gas emission dataset 1990-2020" submitted to Scientific Data <br> Xiang Yu 1, 2, †, Chang Tan 3, †, * 1. University of Chinese Academy of Social Sciences, Beijing 102488, China 2. Research Institute for Eco-civilization (RIEco), Chinese Academy of Social Sciences, Beijing 100710, China 3. Department of Earth System Science, Ministry of Education Key Laboratory for Earth System Modeling, Institute for Global Change Studies, Tsinghua University, Beijing 100084, China *Corresponding author: Chang Tan (tanc21@mails.tsinghua.edu.cn) † These authors should be regarded as co-first authors.
DOI: 10.6084/m9.figshare.4488164.v1
title: Supplementary Material for: The in vivo Inhibition of Oral Biofilm Accumulation and Streptococcus mutans by Ceramic Water

description: Combustion-synthesized titanium carbide ceramics uniformly disperse silver, producing silver ions and hydroxyl radicals in water. This generates antimicrobial activity against various bacteria. One such bacterium is <i>Streptococcus mutans</i>, a gram-positive anaerobic bacterium known as a major pathogen of dental caries. In this study, we analyzed the inhibition of oral biofilms and <i>S. mutans</i> by ceramic water in in vitro and human studies. <i>S. mutans</i> strains showed significantly lower antimicrobial and sucrose-dependent adhesion activity in the presence of ceramic powder compared with untreated culture medium. Confocal microscopy revealed that <i>S. mutans</i> biofilm structures with ceramic powder were thin and coarse. Twenty-seven volunteers (13 males, 14 females; 18-37 years old, mean 25.2 years) were enrolled for subsequent studies. After each meal, one group was asked to rinse with ceramic water while the other rinsed with untreated water for 1 week. After 1 week, the rinsing contents were switched between the groups and the same protocol was followed for an additional week. After rinsing with ceramic water, the average plaque score was 43.0 ± 3.7, which was significantly lower than the baseline value (74.1 ± 5.7, <i>p </i>&lt; 0.001). However, no significant difference was observed when rinsing with untreated water. In addition, the total number of <i>S. mutans</i> in saliva was significantly reduced after rinsing with ceramic water compared with untreated water (<i>p </i>&lt; 0.05). These results suggest that ceramic water possesses antimicrobial activity against <i>S. mutans</i> and inhibits biofilm formation. Rinsing with ceramic water can also inhibit dental plaque formation and <i>S. mutans</i> colonization in humans.
DOI: 10.17632/5v7kjst3w7
title: MATLAB (pcode) to generate bending angles and calculate the cables length during tracking a spiral-like trajectory 

description: The first  file named cableslength.p is an executable MATLAB code (PCODE) which helps to generate the required bending and orientation angles allowing the robot to follow a specific spiral-like trajectory and calculate the cables length for each section during trajectory tracking. The file named Visualization3D.p depicts the 3D simulation during trajectory tracking using ANN.
DOI: 10.17632/jmg3nrvj9d
title: HardwareX - CultureLED

description: STL and INO files for CultureLED system
DOI: 10.17632/g96cx766zh
title: Machine Learning Data

description: Data is used for the research article in terms of Machine Learning
DOI: 10.6084/m9.figshare.15147642.v5
title: The genetic structure of the Turkish population reveals high levels of variation and admixture

description: Turkish Variome contains allele frequencies of 46,739,479 variants of 3,362 unrelated Turkish individuals.<br>Turkish reference panel for imputation contains phased haplotypes of 773 whole-genome sequenced unrelated Turkish individuals.<br>Plink files of 1,460 origin-known Turkish individuals. These files contain 423,261 variants that were used for population structure analyses.<br>
DOI: 10.6084/m9.figshare.9117140.v1
title: pat 7 MRI

description: Admire, Pinnacle, and Velocity denote structure sets after a deformable or rigid registration was applied to the MRI holding the CT as primary.
DOI: 10.17632/6kpysbwnkk
title: Determinación del Alcance del Sistema de Gestión en una Empresa Manufacturera

description: Es un ejercicio de clase en el que los estudiantes deben determinar el alcance de un sistema de gestión basado en las normas ISO 9001:2015, ISO 14001:2015 e ISO 45001:2018 para una empresa manufacturera llamada "Industrias Eficiencia S.A.", que se dedica a la fabricación de electrodomésticos. Los estudiantes deben recopilar información sobre la organización, identificar aspectos clave de calidad, medio ambiente, seguridad y salud ocupacional, y definir los límites del sistema de gestión. El objetivo es aplicar los requisitos de las normas mencionadas para garantizar un enfoque integral y alineado con las operaciones y los riesgos de la empresa​
DOI: 10.17632/gn8wjw7yyv
title: The role of cognitive control in bilingual language comprehension: An event-related potential study of dense code-switching sentences

description: The current dataset relates to the manuscript titled "The role of cognitive control in bilingual language comprehension: An event-related potential study of dense code-switching sentences" which investigated the engagement of domain-general cognitive control during the comprehension of dense code-switching sentences. Stimulus-locked event-related potentials (ERPs) were measured while L1-dominant Chinese–English bilinguals read switch and non-switch sentences. The results of the reading task revealed language dominance effects on the N400, left anterior negativity (LAN) and late positive component (LPC). The language dominance effects at lexical level (i.e., on the N400 and LAN) were modulated by individual differences in monitoring capacity. In contrast, inhibition capacity predicted code-switching costs at the sentence level (i.e., for the LPC component). The results suggest that proactive monitoring and reactive inhibition affect different processing stages during the comprehension of dense code-switching sentences. These findings partially align with processing models of code-switching incorporating a dual control mode perspective and contribute new insight into the dynamic interplay between reactive and proactive control processes.
DOI: 10.17632/hyjvpk4zbd
title: Data for: Chaos in financial markets: Research insights, measures, and influences

description: The 180 literature sample is scrutinized and used to perform a meta-literature review on chaotic detection and behaviour in financial markets to provide valuable insights on prolific authors and affiliations, productive institutions, countries, and journals, trending topics, and impactful studies. The sampled documents are linked to 347 authors, published in 98 journals, with stock indices and currency exchange as the top-2 dominant asset markets. China, Canada, Italy and the US accounted for 23.9% of the studies. Lahmiri Salim and Serletis Apostolos are joint prolific authors, with the former being the most influential author. Chaos, Solitons and Fractals, and ESCA School of Management are respectfully the most productive and impactful journal and institution. Our content analysis provide insights on the evidence for, and against chaos in financial markets using the empirical positions of the literature sample.
DOI: 10.6084/m9.figshare.27060091.v1
title: Supplementary Material for: Microbial Isolates and Antimicrobial Resistance Patterns in Adults with Inborn Errors of Immunity: A Retrospective Longitudinal Analysis of Sputum Cultures

description: Introduction: Individuals with inborn errors of immunity (IEI) are at increased risk of respiratory infection and frequently receive prolonged broad-spectrum antibiotics, leading to antibiotic resistance. To identify respiratory pathogens and antibiotic resistance patterns in IEI patients.
Methods: We retrospectively studied 36 IEI patients with positive bacterial growth in sputum cultures between 2014 and 2023. Data covered hospitalizations, respiratory infections, yearly antibiotic prescriptions, past sputum cultures, and antibiotic sensitivities. Patients with primary ciliary dyskinesia (PCD) and bronchiectasis served as a control group.
Results: A total of 314 sputum cultures were analyzed from patients with IEI, alongside 585 cultures from individuals with PCD, and 113 cultures from patients with bronchiectasis. Patients with IEI had a median age of 23.5 years, with 61% male. The study compared the differences in bacterial isolates from sputum cultures and antibiotic resistance between patients with IEI and the control groups. The most common bacterial isolates across all groups were Haemophilus influenzae (159 isolates in IEI vs. 314 in PCD and 26 in bronchiectasis), Pseudomonas aeruginosa, and Streptococcus pneumoniae. In IEI patients, 992 symptomatic respiratory exacerbations and 43 pneumonia-related hospitalizations were recorded. Notably, Haemophilus influenzae in IEI patients showed high resistance rates to cefuroxime (82%), amoxicillin/clavulanic acid (66%), trimethoprim/sulfamethoxazole (59%), and ampicillin/sulbactam (49%). Pseudomonas aeruginosa in IEI patients displayed significant resistance to ciprofloxacin (85%), ceftazidime (42%), and aminoglycosides (23-33%). Additionally, all Streptococcus pneumoniae isolates in IEI patients were tetracycline-resistant, with high resistance rates to penicillin, clindamycin, and erythromycin. It's essential to highlight the substantial resistance of common pathogens to oral antibiotics. In contrast, the control groups exhibited lower resistance rates across all bacterial isolates.
Conclusion: Antimicrobial resistance is a growing concern among vulnerable IEI patients. We suggest conducting similar investigations in other regions to address this issue. The findings should inform future infection management guidelines for IEIs.
DOI: 10.6084/m9.figshare.7205960.v2
title: VENAT_Probability_map.nii.gz

description: The VENAT atlas was generated of the venous vascular segmentations of 20 participant with each 5 scanning time points. The vessels have been registered via ANTs in multiple registration steps. The atlas is in the MNI152 space. <br>
DOI: 10.17632/jwzmrf8s7n
title: Dataset on Online Food Delivery Platform Characteristics and Consumer Loyalty: The Case of Malaysia

description: The data collected the Malaysian consumers' opinions towards online food delivery platform.
DOI: 10.17632/kpppc634cd
title: Frequency-Specific Contributions to Auditory Perceptual Priors

description: The auditory stimuli, the data sets generated by the 3 experiments, and the code we developed to analyze the data related to the article "Frequency-Specific Contributions to Auditory Perceptual Priors: Testing the Predictive-Coding Hypothesis" are included.
DOI: 10.6084/m9.figshare.21702509.v1
title: Datasets to accompany 'Solitary bee behaviour and pollination is differentially impacted by neonicotinoid and non-neonicotinoid insecticides'

description: This data was collected as part of an experiement to investigate whether multiple exposures to pesticides affected solitary bee foraging behaviour and delivery of polliantion services to apple. (doi: 'x') <br> Solitary bees (<em>Osmia bicornis</em>) were exposed to multiple rounds of insecticide treatment (acetamiprid or lambda-cyhalothrin) via sprayed apple trees in an exclusion cage in a semi-field setting.The foraging behaviour of individually marked bees were recorded after every round of insecticide exposure. <br> Experimental apple trees received single visit pollination after each round of insecticide exposure, which were kept in plant holding cages until ready to harvest. To assess the delivery of pollination services by solitary bees after each round of insecticide exposure, measurements were recorded of successful apple production, the number of seeds per successful apple, and the number of pollen grains deposited per stigma (collected directly after visit).