cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24113794.v1
title: Novel Strategy Involving High-Dose Chemotherapy with Stem Cell Rescue Followed by Intrathecal Topotecan Maintenance Therapy without Whole-Brain Irradiation for Atypical Teratoid/Rhabdoid Tumors

description: Atypical teratoid/rhabdoid tumor (AT/RT) is a rare aggressive central nervous system tumor that typically affects children under three years old and has poor survival with a high risk for neurologic deficits. The primary purpose of this study was to successfully treat the disease and delay or avoid whole-brain radiotherapy for children with AT/RT. A retrospective analysis was performed for six children diagnosed with AT/RT and treated with multimodal treatment at a single institute between 2014 and 2020. Furthermore, germline <i>SMARCB1</i> aberrations and <i>MGMT</i> methylation status of the tumors were analyzed. One patient who did not receive a modified IRS-III regimen replaced with ifosphamide, carboplatin, and etoposide (ICE) in induction chemotherapy was excluded from this analysis. Five patients who received ICE therapy were under three years old. After a surgical approach, they received intensive chemotherapy and high-dose chemotherapy with autologous peripheral blood stem cell transplantation (HDCT/autoPBSCT) followed by intrathecal topotecan maintenance therapy. Three patients underwent single HDCT/autoPBSCT, and the other two received sequential treatment. Two patients with germline <i>SMARCB1</i> aberrations and metastases died of progressive AT/RT or therapy-related malignancy, while 3 with localized tumors without germline <i>SMARCB1</i> aberrations remained alive. One survivor received local radiotherapy only, while the other two did not undergo radiotherapy. All three surviving patients were able to avoid whole-brain radiotherapy. Our results suggest that AT/RT patients with localized tumors without germline <i>SMARCB1</i> aberrations can be rescued with multimodal therapy, including induction therapy containing ICE followed by HDCT/autoPBSCT and intrathecal topotecan maintenance therapy without radiotherapy. Further large-scale studies are necessary to confirm this hypothesis.
DOI: 10.17894/ucph.b5033b21-7904-4814-9410-66317f460cc6
title: Background data for the paper: Constructed wetlands and duckweed ponds as a treatment step in liquid manure handling — A life cycle assessment
DOI: 10.34740/kaggle/dsv/6081459
title: Eggplant_Images
DOI: 10.17894/ucph.7b6d272e-cede-47ac-a2fd-90e9be43a0f6
title: Background data for the paper: Black soldier fly larvae as an alternative feed source and agro-waste disposal route – A life cycle perspective
DOI: 10.5281/zenodo.8073917
title: Host-associated genetic differentiation and origin of a recent host shift in the generalist parasitic weed Phelipanche ramosa

description: The branched broomrape, <em>Phelipanche ramosa</em> (L.) Pomel, is a parasitic weed that can infest several crops, notably tobacco, hemp and tomato. In western France, it has recently adapted to a new host, oilseed rape. We collected <em>P. ramosa</em> samples from fields cultivated with six different crops across Europe. Data from SSR markers and DNA sequences showed strong host-associated genetic differentiation. File SSRdata-Pramosa1611.txt contains sampling locations, host crops and microsatellite genotypes. Files BO1aligned.fas, ITSaligned.fas, RPL16aligned.fas and trnKtrnQaligned.fas contain aligned DNA sequences.
DOI: 10.5281/zenodo.8073916
title: Host-associated genetic differentiation and origin of a recent host shift in the generalist parasitic weed Phelipanche ramosa

description: The branched broomrape, <em>Phelipanche ramosa</em> (L.) Pomel, is a parasitic weed that can infest several crops, notably tobacco, hemp and tomato. In western France, it has recently adapted to a new host, oilseed rape. We collected <em>P. ramosa</em> samples from fields cultivated with six different crops across Europe. Data from SSR markers and DNA sequences showed strong host-associated genetic differentiation. File SSRdata-Pramosa1611.txt contains sampling locations, host crops and microsatellite genotypes. Files BO1aligned.fas, ITSaligned.fas, RPL16aligned.fas and trnKtrnQaligned.fas contain aligned DNA sequences.
DOI: 10.6084/m9.figshare.24113793
title: Dataset for "Trial-history biases in evidence accumulation can give rise to apparent lapses"

description: This is the dataset for the manuscript "Trial-history biases in evidence accumulation can give rise to apparent lapses"<br><br>Abstract: Trial history biases and lapses are two of the most common suboptimalities observed during perceptual decision-making. These suboptimalities are routinely assumed to arise from distinct processes. However, several hints in the literature suggest that they covary in their prevalence and that their proposed neural substrates overlap -- what could underlie these links? Here we demonstrate that history biases and apparent lapses can both arise from a common cognitive process that is optimal under mistaken beliefs that the world is changing i.e. nonstationary. This corresponds to an accumulation-to-bound model with history-dependent updates to the initial state of the accumulator. We test our model's predictions about the relative prevalence of history biases and lapses, and show that they are robustly borne out in two distinct rat decision-making datasets, including data from a novel reaction time task. Our model improves the ability to precisely predict decision-making dynamics within and across trials, by positing a process through which agents can generate quasi-stochastic choices.
DOI: 10.6084/m9.figshare.24113793.v1
title: Dataset for "Trial-history biases in evidence accumulation can give rise to apparent lapses"

description: This is the dataset for the manuscript "Trial-history biases in evidence accumulation can give rise to apparent lapses"<br><br>Abstract: Trial history biases and lapses are two of the most common suboptimalities observed during perceptual decision-making. These suboptimalities are routinely assumed to arise from distinct processes. However, several hints in the literature suggest that they covary in their prevalence and that their proposed neural substrates overlap -- what could underlie these links? Here we demonstrate that history biases and apparent lapses can both arise from a common cognitive process that is optimal under mistaken beliefs that the world is changing i.e. nonstationary. This corresponds to an accumulation-to-bound model with history-dependent updates to the initial state of the accumulator. We test our model's predictions about the relative prevalence of history biases and lapses, and show that they are robustly borne out in two distinct rat decision-making datasets, including data from a novel reaction time task. Our model improves the ability to precisely predict decision-making dynamics within and across trials, by positing a process through which agents can generate quasi-stochastic choices.
DOI: 10.5281/zenodo.8330634
title: Supporting data for "Measuring the Loschmidt amplitude for finite-energy properties of the Fermi-Hubbard model on an ion-trap quantum computer"

description: This repository contains the supporting data for the publication: "Measuring the Loschmidt amplitude for finite-energy properties of the Fermi-Hubbard model on an ion-trap quantum computer".
DOI: 10.5281/zenodo.8330633
title: Supporting data for "Measuring the Loschmidt amplitude for finite-energy properties of the Fermi-Hubbard model on an ion-trap quantum computer"

description: This repository contains the supporting data for the publication: "Measuring the Loschmidt amplitude for finite-energy properties of the Fermi-Hubbard model on an ion-trap quantum computer".
DOI: 10.5281/zenodo.7798500
title: 6 most abundant equilibrated milk proteins

description: This dataset contains the equilibrated PDBs for six most abundant milk proteins, namely αs1-casein, αs2-casein, β-casein, α-lactalbumin, β-lactoglobulin and Bovine Serum Albumin using Molecular Dynamics. The 3D structure of the proteins has been created by Dr. Julia Subbotina using ITASSER from the AA sequences. Then I performed GROMACS for energy minimisation and equilibration. The system was solvated using the original form of TIP3 water model and It was then neutralized by NaCl regarding the charge of the whole system. In the MD calculation the energy of the system has been minimized by Verlet particle-based cut-off scheme using charge groups and steepest gradient method for 10000 steps. The system was equilibrated under constant pressure, particles and temperature (300 K) condition (NPT) using Berendsen weak coupling for 10.0 ns. The component of the pressure tensor were set to 1.0 bar. The thermostat and the barostat for the relaxation time was 1.0 ps. The system underwent another more unbiased equilibrations for 20 ns in the NVT ensemble conditions. The Nose-Hoover thermostat's relaxation time constant for the NVT ensemble was 5 ps. The cut-off distance was set to 1.0 nm for the VdW short range interactions. After analysing the RMSD (Root Mean Square Deviation) as a function of time, the
DOI: 10.5281/zenodo.7798499
title: 6 most abundant equilibrated milk proteins

description: This dataset contains the equilibrated PDBs for six most abundant milk proteins, namely αs1-casein, αs2-casein, β-casein, α-lactalbumin, β-lactoglobulin and Bovine Serum Albumin using Molecular Dynamics. The 3D structure of the proteins has been created by Dr. Julia Subbotina using ITASSER from the AA sequences. Then I performed GROMACS for energy minimisation and equilibration. The system was solvated using the original form of TIP3 water model and It was then neutralized by NaCl regarding the charge of the whole system. In the MD calculation the energy of the system has been minimized by Verlet particle-based cut-off scheme using charge groups and steepest gradient method for 10000 steps. The system was equilibrated under constant pressure, particles and temperature (300 K) condition (NPT) using Berendsen weak coupling for 10.0 ns. The component of the pressure tensor were set to 1.0 bar. The thermostat and the barostat for the relaxation time was 1.0 ps. The system underwent another more unbiased equilibrations for 20 ns in the NVT ensemble conditions. The Nose-Hoover thermostat's relaxation time constant for the NVT ensemble was 5 ps. The cut-off distance was set to 1.0 nm for the VdW short range interactions. After analysing the RMSD (Root Mean Square Deviation) as a function of time, the
DOI: 10.57967/hf/1086
title: fluorescence
DOI: 10.6084/m9.figshare.21716696
title: ALL_unfiltered SNPs

description: Unfiltered SNPs on 3443 accessions following SPET genotyping
DOI: 10.6084/m9.figshare.21716696.v1
title: ALL_unfiltered SNPs

description: Unfiltered SNPs on 3443 accessions following SPET genotyping
DOI: 10.5281/zenodo.8242604
title: ELITE emissivity: Himawari-8/AHI daily 0.02° NBE (2020)

description: The <strong>E</strong>ssential therma<strong>L</strong> <strong>I</strong>nfrared remo<strong>T</strong>e s<strong>E</strong>nsing (<strong>ELITE</strong>) product suite currently has four types of products, including land surface temperature (LST: clear-sky and all-sky), emissivity (NBE: narrowband emissivity; BBE: broadband emissivity; and spectral emissivity), the component of surface radiation and energy budget (SLUR: surface longwave upwelling radiation; SLDR: surface longwave downward radiation SLDR; SLNR: surface longwave net radiation), and the component of Earth’s radiation budget (OLR; outgoing longwave radiation; RSR: reflected solar radiation). The spatial-temporal resolutions of the ELITE products are mainly determined by the employed satellite data sources. For more information about ELITE products, please refer to the website (https://elite.bnu.edu.cn). This dataset is the Himawari-8/AHI daily 0.02° NBE produced from the hourly clear-sky NBE dataset derived by the iTES algorithm (Zhou and Cheng, 2020). The bias and RMSE of the retrieved hourly NBE are less than 0.005 and 0.014, respectively, compared with the latest MYD21 LSE. The temporal resolution and spatial resolution of this dataset are daily and 0.02°, respectively. This is the ELITE Himawari-8/AHI NBE product in 2020. Please <strong><em>click here</em></strong> to download the ELITE NBE product in 2019 and <strong><em>click here</em></strong> to download the ELITE NBE product in 2021. <strong>Dataset Characteristics:</strong> Spatial Coverage: AHI 0.02° nominal fixed grid (60°N∼60°S, 80°E∼160°W) Temporal Coverage: 2020 Spatial Resolution: 0.02° Temporal Resolution: daily Data Format: HDF Scale: 0.001 <strong>Citation </strong>(Please cite these papers when using the data)<strong>:</strong> Zhou, S., & Cheng, J. (2020). An Improved Temperature and Emissivity Separation Algorithm for the Advanced Himawari Imager. IEEE Transactions on Geoscience and Remote Sensing, 58(10), 7105-7124. If you have any questions, please contact Prof. Jie Cheng (eliteqrs@126.com).
DOI: 10.5281/zenodo.8242605
title: ELITE emissivity: Himawari-8/AHI daily 0.02° NBE (2020)

description: The <strong>E</strong>ssential therma<strong>L</strong> <strong>I</strong>nfrared remo<strong>T</strong>e s<strong>E</strong>nsing (<strong>ELITE</strong>) product suite currently has four types of products, including land surface temperature (LST: clear-sky and all-sky), emissivity (NBE: narrowband emissivity; BBE: broadband emissivity; and spectral emissivity), the component of surface radiation and energy budget (SLUR: surface longwave upwelling radiation; SLDR: surface longwave downward radiation SLDR; SLNR: surface longwave net radiation), and the component of Earth’s radiation budget (OLR; outgoing longwave radiation; RSR: reflected solar radiation). The spatial-temporal resolutions of the ELITE products are mainly determined by the employed satellite data sources. For more information about ELITE products, please refer to the website (https://elite.bnu.edu.cn). This dataset is the Himawari-8/AHI daily 0.02° NBE produced from the hourly clear-sky NBE dataset derived by the iTES algorithm (Zhou and Cheng, 2020). The bias and RMSE of the retrieved hourly NBE are less than 0.005 and 0.014, respectively, compared with the latest MYD21 LSE. The temporal resolution and spatial resolution of this dataset are daily and 0.02°, respectively. This is the ELITE Himawari-8/AHI NBE product in 2020. Please <strong><em>click here</em></strong> to download the ELITE NBE product in 2019 and <strong><em>click here</em></strong> to download the ELITE NBE product in 2021. <strong>Dataset Characteristics:</strong> Spatial Coverage: AHI 0.02° nominal fixed grid (60°N∼60°S, 80°E∼160°W) Temporal Coverage: 2020 Spatial Resolution: 0.02° Temporal Resolution: daily Data Format: HDF Scale: 0.001 <strong>Citation </strong>(Please cite these papers when using the data)<strong>:</strong> Zhou, S., & Cheng, J. (2020). An Improved Temperature and Emissivity Separation Algorithm for the Advanced Himawari Imager. IEEE Transactions on Geoscience and Remote Sensing, 58(10), 7105-7124. If you have any questions, please contact Prof. Jie Cheng (eliteqrs@126.com).
DOI: 10.34740/kaggle/dsv/6440816
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.5281/zenodo.3908721
title: Late Triassic E-MORB/OIB-like basalts in a continental arc, eastern Tibet, formed by the subduction of a conservative plate boundary?

description: The ~1500-km-long, (N)NW–(S)SE-trending, Yushu–Yidun Arc delineates the configuration of subducted Paleo-Tethyan oceanic lithosphere in the central–eastern Tibetan Plateau. At its southern termination, widespread Late Triassic arc-like rocks are associated with coeval, minor amounts of E-MORB/OIB-like basalts (EOB) and porphyry Cu (±Mo, ±Au) deposits developed to the north of the southwestern extension of the Longmenshan Fault. This association of tectonic, magmatic, and ore deposit features, along with the coeval dextral slip of the Longmenshan Fault and NE–SW-trending granitic belt to the northwest, were likely related to the active proto-Longmenshan Fault. This was a weakened conservative plate boundary located between the subducted Garze–Litang oceanic lithosphere and Yangtze Craton. Upwelling asthenospheric mantle along the subducted conservative plate boundary underwent decompression partial melting and formed the parental melts of the EOB, which triggered partial melting of the subducted slab and metasomatized mantle wedge and formed the ore-forming magmas and arc-like andesites, respectively.
DOI: 10.6084/m9.figshare.24113829
title: Sequence chromatogram of the c.3744_3752del mutation on the <i>SCN1A</i> gene in the proband and her family members

description: In family 2, the proband carried one variant in the <i>SCN1A</i> gene (c.3744_3752del) associated with twitching, whereas it was not detected in parents (Figure 1B).
DOI: 10.6084/m9.figshare.24113829.v1
title: Sequence chromatogram of the c.3744_3752del mutation on the <i>SCN1A</i> gene in the proband and her family members

description: In family 2, the proband carried one variant in the <i>SCN1A</i> gene (c.3744_3752del) associated with twitching, whereas it was not detected in parents (Figure 1B).
DOI: 10.6084/m9.figshare.24113880
title: Sequence chromatogram of the c.209del mutation on the <i>SCN1A</i> gene in the proband and her family members

description: In family 3, the c.209del variant in the <i>SCN1A</i> gene existed in the proband and was absent in his healthy father and mother.
DOI: 10.6084/m9.figshare.24113880.v1
title: Sequence chromatogram of the c.209del mutation on the <i>SCN1A</i> gene in the proband and her family members

description: In family 3, the c.209del variant in the <i>SCN1A</i> gene existed in the proband and was absent in his healthy father and mother.
DOI: 10.25919/9way-ev14
title: Parkes observations for project P456 semester 2023APRS_13

description: The Parkes Pulsar Timing Array (PPTA) project has three primary goals: (a) detection of gravitational waves from astronomical sources, (b) establishment of a pulsar timescale, and (c) improvement of our understanding of Solar-system dynamics. We are now in an exciting regime where a signal detected in our (and other data sets) has the form expected for a gravitational wave background. We are therefore now attempting to confirm, or deny, this exciting result. With this proposal we aim to maintain our pre-eminent position in the field. Unlike most observing proposals, this is a continuing proposal for which the observations will continue to improve bounds on ultra-low-frequency gravitational waves until they are finally detected. Continued Parkes observations will remain valuable at least until the first stage of the SKA is able to improve on our sensitivity and observing cadence. Even after the gravitational wave background is detected we will want to continue observations in support of the nascent field of gravitational wave astronomy!
DOI: 10.6084/m9.figshare.24114006
title: Sequence chromatogram of the c.5776del mutation on the <i>SCN1A</i> gene in the proband and her family members

description: In family 5, the detected variant in the <i>SCN1A</i> gene (c.5776del) of the proband inherited from her mother.
DOI: 10.6084/m9.figshare.24114006.v1
title: Sequence chromatogram of the c.5776del mutation on the <i>SCN1A</i> gene in the proband and her family members

description: In family 5, the detected variant in the <i>SCN1A</i> gene (c.5776del) of the proband inherited from her mother.
DOI: 10.34740/kaggle/dsv/6440931
title: 2021 World Population (updated daily)
DOI: 10.5519/qd.5jn5pte0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (42 records)
DOI: 10.5281/zenodo.8219422
title: Annotated corpus samples of resultative nomination constructions in 4 languages (Dutch, English, French, Spanish)

description: This dataset includes an annotated corpus sample retrieved from Sketch Engine of 3200 (i.e. 800x4) resultative constructions in 4 languages (Dutch, English, French, Spanish) with 16 (i.e. 4x4) different nomination verbs (Dutch: kronen 'crown', verkiezen 'elect', promoveren 'promote', uitroepen 'proclaim; English: crown, elect, promote, proclaim; French: couronner 'crown', élire 'elect', promouvoir 'promote', proclamer 'proclaim'; Spanish: coronar 'crown', elegir 'elect', ascender 'promote', proclamar 'proclaim').
DOI: 10.5281/zenodo.8219421
title: Annotated corpus samples of resultative nomination constructions in 4 languages (Dutch, English, French, Spanish)

description: This dataset includes an annotated corpus sample retrieved from Sketch Engine of 3200 (i.e. 800x4) resultative constructions in 4 languages (Dutch, English, French, Spanish) with 16 (i.e. 4x4) different nomination verbs (Dutch: kronen 'crown', verkiezen 'elect', promoveren 'promote', uitroepen 'proclaim; English: crown, elect, promote, proclaim; French: couronner 'crown', élire 'elect', promouvoir 'promote', proclamer 'proclaim'; Spanish: coronar 'crown', elegir 'elect', ascender 'promote', proclamar 'proclaim').
DOI: 10.18112/openneuro.ds004348.v1.0.2
title: Ear-EEG Sleep Monitoring 2017 (EESM17)
DOI: 10.15156/bio/sh1309740.08fu
title: SH1309740.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1309741.08fu
title: SH1309741.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.