cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11861139.v2
title: Evaluation of a sludge-treatment process comprising lipid extraction and drying using liquefied dimethyl ether

description: Liquefied dimethyl ether (DME) was used to extract lipids from sewage sludge. Factorial experimental analyses were used to evaluate the influence of different variables on raw lipid extraction and sludge drying. The DME method was compared with the Bligh and Dyer (B&D) method for three undigested and two anaerobically digested dewatered sludges. The results indicate that although the raw lipid yield of the B&D method was 5% higher than that of the DME method, the proportion of fatty acid methyl esters (FAMEs) in raw lipids extracted by the DME method was 14.1–33.4%, almost twice that of the B&D method. The FAME composition varied according to sludge type, and the dewatered undigested sludges contained more unsaturated fatty acids (e.g. C18:1, C18:2). The lower heating value (LHV) of product by the DME method ranged from 3.74 to 5.70 MJ/kg compared with 1.21–0.39 MJ/kg for the B&D method. Also, DME could be reused at least five times without significantly reducing the lipid yield and drying efficiency. Finally, an economic analysis of the DME, the conventional solvent extraction, and the heat-drying methods was conducted.
DOI: 10.6084/m9.figshare.11861139.v1
title: Evaluation of a Sludge-Treatment Process Comprising Lipid Extraction and Drying using Liquefied Dimethyl Ether

description: Liquefied dimethyl ether (DME) was used to extract lipids from sewage sludge. Factorial experimental analyses were used to evaluate the influence of different variables on raw lipid extraction and sludge drying. The DME method was compared with the Bligh and Dyer (B&D) method for three undigested and two anaerobically digested dewatered sludges. The results indicate that although the raw lipid yield of the B&D method was 5% higher than that of the DME method, the proportion of fatty acid methyl esters (FAMEs) in raw lipids extracted by the DME method was 14.1–33.4%, almost twice that of the B&D method. The FAME composition varied according to sludge type, and the dewatered undigested sludges contained more unsaturated fatty acids (<i>e</i>.<i>g</i>., C18:1, C18:2). The lower heating value (LHV) of product by the DME method ranged from 3.74 to 5.70 MJ/kg compared with 1.21–0.39 MJ/kg for the B&D method. Also, DME could be reused at least five times without significantly reducing the lipid yield and drying efficiency. Finally, an economic analysis of the DME, the conventional solvent extraction, and the heat-drying methods was conducted.
DOI: 10.6084/m9.figshare.17104024
title: Additional file 1 of Feature selection revisited in the single-cell era

description: Additional file 1: Table S1. A list of studies that applied feature selection techniques to the single-cell field.
DOI: 10.6084/m9.figshare.17104024.v1
title: Additional file 1 of Feature selection revisited in the single-cell era

description: Additional file 1: Table S1. A list of studies that applied feature selection techniques to the single-cell field.
DOI: 10.25345/c5dn4065d
title: MassIVE MSV000094116 - GNPS-mirror plot of new secondary bile acids
title: Comparison of LC/MS data of 3-acetylated CAs from synthetic standards and bacteria cultured samples
DOI: 10.21227/0q5y-3529
title: WA_Fn-UseC_-Telco-Customer-Churn

description: Nowadays, the high cost of customer acquisition makes telecom operators encounter the “ceiling”, and even fall into the dilemma of customer acquisition. As market saturation increases, telecom operators need to solve the problem of increasing subscriber stickiness and prolonging subscriber life cycle. Therefore, it is crucial to analyse and predict the churn of telecom users. The dataset is ”Telecom Operator Customer Dataset”. The dataset obtained from the official Kaggle competition website in this study, which comprised 21 fields. Because the customer ID serves as a unique identifier for each customer and is not relevant to the data analysis, we focus on the remaining 20 fields, which include 19 input variables and 1 target variable. The target variable is a dichotomous variable representing whether a customer has churned.
DOI: 10.6084/m9.figshare.11861157
title: Nurturing professionalism in medical schools. A systematic scoping review of training curricula between 1990–2019

description: <b>Introduction:</b> Professionalism is an evolving, socioculturally informed multidimensional construct that influences doctor-patient relationships, patient satisfaction and care outcomes. However, despite its clinical significance there is little consistency in how professionalism is nurtured amongst medical students. To address this gap a systemic scoping review of nurturing professionalism in medical schools, is proposed. <b>Methods:</b> Levac’s framework and the PRISMA-P 2015 checklist underpinned a 6-stage systematic review protocol. Concurrent use of Braun and Clarke’s approach to thematic analysis and directed content analysis was used to identify the key elements in nurturing professionalism. <b>Results:</b> 13921 abstracts were identified from six databases, 854 full-text articles reviewed, and 162 full-text included articles were included. The 4 themes identified through thematic analysis are consistent with findings of the directed content analysis. These were the definition of professionalism, the approaches, content, barriers and enablers to teaching professionalism. <b>Conclusion:</b> Informed by a viable definition of professionalism and clear milestones nurturing professionalism nurturing professionalism begins with culturally appropriate training in clinical competence, humanistic qualities and reflective capacity. This process requires effective evaluations of professional identity formation, and the impact of the learning environment underlining the need for longitudinal assessments of the training process.
DOI: 10.6084/m9.figshare.11861157.v1
title: Nurturing professionalism in medical schools. A systematic scoping review of training curricula between 1990–2019

description: <b>Introduction:</b> Professionalism is an evolving, socioculturally informed multidimensional construct that influences doctor-patient relationships, patient satisfaction and care outcomes. However, despite its clinical significance there is little consistency in how professionalism is nurtured amongst medical students. To address this gap a systemic scoping review of nurturing professionalism in medical schools, is proposed. <b>Methods:</b> Levac’s framework and the PRISMA-P 2015 checklist underpinned a 6-stage systematic review protocol. Concurrent use of Braun and Clarke’s approach to thematic analysis and directed content analysis was used to identify the key elements in nurturing professionalism. <b>Results:</b> 13921 abstracts were identified from six databases, 854 full-text articles reviewed, and 162 full-text included articles were included. The 4 themes identified through thematic analysis are consistent with findings of the directed content analysis. These were the definition of professionalism, the approaches, content, barriers and enablers to teaching professionalism. <b>Conclusion:</b> Informed by a viable definition of professionalism and clear milestones nurturing professionalism nurturing professionalism begins with culturally appropriate training in clinical competence, humanistic qualities and reflective capacity. This process requires effective evaluations of professional identity formation, and the impact of the learning environment underlining the need for longitudinal assessments of the training process.
DOI: 10.6084/m9.figshare.10288320
title: Fuzzy optimization model for electric vehicle routing problem with time windows and recharging stations

description: This is the experimental data of the manuscript entitled "Fuzzy optimization model for electric vehicle routing problem with time windows and recharging stations".<br>
DOI: 10.6084/m9.figshare.10288326
title: Fuzzy optimization model for electric vehicle routing problem with time windows and recharging stations

description: This is the experimental data of the manuscript entitled "Fuzzy optimization model for electric vehicle routing problem with time windows and recharging stations".
DOI: 10.6084/m9.figshare.17104128
title: Additional file 2 of Alterations of thyroid microbiota across different thyroid microhabitats in patients with thyroid carcinoma

description: Additional file 2: Table S2. The identified phylum in each samples.
DOI: 10.6084/m9.figshare.17104128.v1
title: Additional file 2 of Alterations of thyroid microbiota across different thyroid microhabitats in patients with thyroid carcinoma

description: Additional file 2: Table S2. The identified phylum in each samples.
DOI: 10.6084/m9.figshare.17104131
title: Additional file 3 of Alterations of thyroid microbiota across different thyroid microhabitats in patients with thyroid carcinoma

description: Additional file 3: Table S3. The identified phylum in each group.
DOI: 10.6084/m9.figshare.17104131.v1
title: Additional file 3 of Alterations of thyroid microbiota across different thyroid microhabitats in patients with thyroid carcinoma

description: Additional file 3: Table S3. The identified phylum in each group.
DOI: 10.6084/m9.figshare.17104134
title: Additional file 4 of Alterations of thyroid microbiota across different thyroid microhabitats in patients with thyroid carcinoma

description: Additional file 4: Table S4. The identified genera in each sample.
DOI: 10.6084/m9.figshare.17104134.v1
title: Additional file 4 of Alterations of thyroid microbiota across different thyroid microhabitats in patients with thyroid carcinoma

description: Additional file 4: Table S4. The identified genera in each sample.
DOI: 10.6073/pasta/e5fd6a11166baaa1759794a32810d913
title: Nitrogen Deposition and Pitcher Plant Morphology in Massachusetts and Vermont 1998-1999

description: Atmospheric transport and deposition of nutrients, especially nitrogen, is a global environmental problem with well-documented consequences for ecosystem dynamics. However, monitoring nitrogen deposition is relatively expensive, monitoring stations are widely spaced, and estimates and predicted impacts of nitrogen deposition are currently derived from spatial modeling and interpolation of limited data. Bogs are nutrient-poor ecosystems that are especially sensitive to increasing nutrient input, and carnivorous plants, which are characteristic of these widespread ecosystem types, may be especially sensitive indicators of N deposition. Botanical carnivory is thought to have evolved in nutrient-poor and well-lit habitats such as bogs because the marginal benefits accruing from carnivory exceed the marginal photosynthetic costs associated with the maintenance of carnivorous organs. However, the production of carnivorous organs can be a phenotypically plastic trait. The northern pitcher plant, Sarracenia purpurea, produces leaves specialized for prey capture and nutrient uptake (pitchers) and leaves that are more efficient at photosynthesis (phyllodia). We hypothesized that relative allocation to these two types of leaves reflects ambient nitrogen availability. We manipulated nutrient availability to plants with leaf enrichment and whole-plot fertilization experiments. Increased nitrogen, but not phosphorus, reduced production of pitchers relative to phyllodia; this result provided empirical support for the cost–benefit model of the evolution of botanical carnivory. Because this phenotypic shift in leaf production occurs in ecological time, our results suggest that S. purpurea could be a reliable and inexpensive biological indicator of nitrogen deposition rates. This suggestion is supported by field observations across a geographic gradient of nitrogen deposition.
DOI: 10.6073/pasta/4fe4149a497775c5696af0710c1e8824
title: Seed Dispersal and Seedling Establishment of Sarracenia Purpurea at Hawley Bog, MA 1998-1999

description: Plant ecologists continue to grapple with Reid’s paradox, the observation that dispersal distances of most herbs and trees are too limited to account for their recolonization of northern latitudes following glacial recession. As global climate changes and natural habitats become increasingly fragmented, understanding patterns of seed dispersal and the potential for long-distance colonization takes on new importance. We studied the dispersal and establishment of the northern pitcher plant Sarracenia purpurea, which grows commonly in isolated bogs throughout Canada and eastern North America. Median dispersal distance of S. purpurea is only 5 cm, which is insufficient to explain its occurrence throughout formerly glaciated regions of North America. Establishment probability of seeds in the field is approximately 5%, and juveniles are normally found clustered around adult plants. The large-scale population genetic structure of this species can be accounted for by rare long-distance dispersal events, but its predictable occurrence in isolated habitats requires additional explanation. Reid’s paradox remains an open question, and predicting long-range colonization into fragmented habitats by species with limited dispersal ability is a novel challenge.
DOI: 10.6084/m9.figshare.14885238
title: Cointegrate plasmid pSL131_IncA/C_IncX3 with different structures

description: Cointegrate plasmid pSL131_IncA/C_IncX3 with different structures
DOI: 10.6084/m9.figshare.14885238.v3
title: Cointegrate plasmid pSL131_IncA/C_IncX3 with different structures

description: Cointegrate plasmid pSL131_IncA/C_IncX3 with different structures
DOI: 10.6084/m9.figshare.14885238.v2
title: Cointegrate plasmid pSL131_IncA/C_IncX3 with different structures

description: Cointegrate plasmid pSL131_IncA/C_IncX3 with different structures
DOI: 10.6084/m9.figshare.14932476
title: Supplementary Material for: Skin Barrier Damage due to Prolonged Mask Use among Healthcare Workers and the General Population during the COVID-19 Pandemic: A Prospective Cross-Sectional Survey in China

description: <b><i>Background:</i></b> Coronavirus disease 2019 (COVID-19) has resurged in localized areas in China. Individuals wear masks to prevent the spread of droplets. However, skin barrier damage occurs because of the prolonged use of masks. <b><i>Objective:</i></b> To investigate the prevalence and associated risk factors of skin injuries among healthcare workers (HCWs) and the general population during the COVID-19 outbreak. <b><i>Methods:</i></b> A multicenter cross-sectional study of skin barrier damage caused by wearing masks was conducted using an online questionnaire between December 10 and December 31, 2020. Data regarding demographics, characteristics of facial skin damage, and information on masks were registered. Multivariate logistic regression was used to analyze factors associated with skin barrier damage, and odds ratios (OR) with 95% confidence intervals (CI) were used to establish correlation strength. <b><i>Results:</i></b> A total of 1,538 responses were retrieved from 1,700 questionnaires (response rate, 90.47%), and 1,409 questionnaires were valid (effective response rate, 91.61%). The respondents comprised 567 HCWs (40.24%) and 842 individuals from the general population (59.76%). The prevalence of skin injuries was 46.03% among HCWs and 46.20% among the general population. History of chronic skin disease (OR, 6.01; 95% CI, 4.75–7.75), type of mask used (OR, 2.77; 95% CI, 1.95–3.93), daily wearing time (OR, 1.57; 95% CI, 1.36–1.82), and mask replacement cycle (OR, 0.76; 95% CI, 0.68–0.86) were associated with skin barrier damage. <b><i>Conclusion:</i></b> There was a high incidence of skin barrier damage due to prolonged mask use among HCWs and the general population, and treatment and prevention were inadequate. Attention needs to be given to strengthening comprehensive health education and popularization of science.
DOI: 10.6073/pasta/25ec8a9b862ff7b7acbc3d29e7e505c9
title: Species Distribution Modeling of Carnivorous Plants Worldwide

description: Forecasting how carnivorous plant species will respond to climatic change is a key issue in their conservation and management but presents a number of challenges. These challenges derive from interactions between the relatively simplistic statistical methods typically used to forecast species responses to climatic change, which to date have been limited mainly to species distribution models (“SDMs) and particular aspects of the ecology of carnivorous plants, including their rarity, habitat specialization, and limited dispersal ability. The small ranges and oftentimes low local abundance of carnivorous plants provide few occurrence records, which increase the potential for poorly or over-fitted SDMs and misspecification of relationships with their “optimal” environments. The unique habitats in which carnivorous plants often grow also are difficult to characterize using the basic temperature and precipitation data that often undergird SDMs. Rather, habitats in which carnivorous plants are common often are decoupled from broader climatic patterns (e.g., many retain high soil moisture even during seasonal drought) and may be associated with frequent disturbance. Last, dispersal limitation also may constrain range shifts of carnivorous plants as the climate changes. These three issues raise two related questions that are critical for understanding and forecasting the future of carnivorous plants. First, to what extent are current carnivorous plants distributions constrained by climate; and second, how readily, if at all, might carnivorous plants disperse to colonize new habitat as it becomes climatically suitable? We estimated the vulnerability of carnivorous plants to climatic change in light of challenges identified with SDMs in general and their particular application to these unique species. We combined two approaches: “ensembles of small models”, which attempt to deal with the challenges of fitting SDMs for data-limited species; and “bioclimatic velocity”, which is an estimate of how fast a species would have to migrate to track its climatic niche, to provide initial assessments of the vulnerability of carnivorous plants to climatic change. We also explored, for one carnivorous plant (Sarracenia purpurea) how to additionally incorporate demographic complexity into its SDM.
DOI: 10.5281/zenodo.5082356
title: Supplementary Data for "Molecular dynamics simulations provide structural insight into binding of cyclic dinucleotides to human STING protein"

description: Supplementary Data for "Molecular dynamics simulations provide structural insight into binding of cyclic dinucleotides to human STING protein", Journal of Biomolecular Structure and Dynamics, 2021, 10.1080/07391102.2021.1942213 A random selection of 10 representative structures from each MSM state of STING/CDN complexes is provided in .pdb file format. The selected MSM representatives are aligned and available as PyMOL session files.
DOI: 10.5281/zenodo.5082355
title: Supplementary Data for "Molecular dynamics simulations provide structural insight into binding of cyclic dinucleotides to human STING protein"

description: Supplementary Data for "Molecular dynamics simulations provide structural insight into binding of cyclic dinucleotides to human STING protein", Journal of Biomolecular Structure and Dynamics, 2021, 10.1080/07391102.2021.1942213 A random selection of 10 representative structures from each MSM state of STING/CDN complexes is provided in .pdb file format. The selected MSM representatives are aligned and available as PyMOL session files.
DOI: 10.5281/zenodo.4997452
title: SOIL-WATERGRIDS v1, mapping dynamic changes in soil moisture and depth of water table from 1970 to 2014, dataset and modelling

description: SOIL-WATERGRIDS is a comprehensive data product of the monthly estimates of volumetric soil water content at three depths within the root zone and the depth of the water table globally gridded at a resolution of 0.25x025 degree per grid cell from 1970 to 2014. The SOIL-WATERGRIDS data product also provides the full-scale global model (BRTSim, https://sites.google.com/site/thebrtsimproject/home) that allows third party users to assess the entire volumetric soil water content and water table dynamics from land surface to 50 m depth. This package includes a Technical Documentation with the details about the use of the data product.
DOI: 10.6073/pasta/fee3d79b20447e70ef2cc11cbaf2c938
title: Soil Microbial Community Effects on Quercus Rubra Seedling Survival at Harvard Forest 2016-2017

description: Feedbacks between plants and their soil microbial communities often drive negative density dependence in tropical forests, but their importance for tree demographics in temperate forests remains unclear. Additionally, the relative contribution of intraspecific seedling competition and soil pathogens to density-dependent patterns has rarely been assessed. We assessed how the soil microbial community influenced Quercus rubra seedling survival by growing seedlings in a greenhouse inoculated with soil collected from beneath conspecific and heterospecific mature trees. We found that seedlings grown with soil from beneath conspecific adults had a higher mortality rate than seedlings grown with soil from beneath heterospecific adults; therefore adult plant-soil feedbacks decrease seedling survival in Q. rubra.
DOI: 10.6073/pasta/30b7d28f97f41af38f8dfe354dd30e44
title: Hysteresis of the Sarracenia Purpurea Microecosystem in Northern Vermont 2015-2016

description: The restoration of plant and animal communities damaged by chronic detrital or nutrient enrichment is a long-standing environmental problem. In a replicated greenhouse experiment with the aquatic microbial community that inhabits the cup-shaped leaves of the carnivorous pitcher plant Sarracenia purpurea, we monitored O2 levels and the concentration of bovine serum album (BSA), an effective molecular substitute for detritus. Low BSA enrichment rates triggered a classic hysteresis response, a substantial lag in the return of O2 levels. At intermediate BSA enrichment rates, O2 levels closely tracked BSA concentrations during both the enrichment and recovery phases. High BSA enrichment rates induced an unusual "anti-clockwise" hysteresis in which O2 levels were higher during the recovery phase than during the enrichment phase. These experiments revealed complex dynamic behavior in response to enrichment rates of a single environmental driver. Our results suggest that the past trajectory of enrichment is critical for understanding how systems will respond to restoration initiatives. Specifically, systems that have been exposed to chronic low levels of enrichment may be the ones that are most resistant to restoration efforts that reduce nutrient or detrital inputs.
DOI: 10.6084/m9.figshare.14932503
title: prepare_data_for_3D_MAPs_sample_data

description: Sample data to test the code "Prepare_data_for_3D_MAPs"
DOI: 10.6084/m9.figshare.14932503.v1
title: prepare_data_for_3D_MAPs_sample_data

description: Sample data to test the code "Prepare_data_for_3D_MAPs"
DOI: 10.25934/00005761.1
title: Available IPD datapackage for study 'A Multi-center, Randomized, Double-blind, Parallel Group Study of the Safety, Disease Remission and Prevention of Structural Joint Damage During Treatment With Tocilizumab (TCZ), as a Monotherapy and in Combination With Methotrexate (MTX), Versus Methotrexate in Patients With Early, Moderate to Severe Rheumatoid Arthritis'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.6084/m9.figshare.11859996.v1
title: Maternal genes and pathways affecting birth weight and weaning weight traits in sheep: A GWAS and pathway enrichment analysis

description: Genotype data in plink format (tfiles) + Phenotype files