cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.960176
title: Measurements of the unpaired actine of Paraleucilla magna's newly sponges developed under control and low-pH conditions

description: Calcifying organisms are considered as threatened by ocean acidification, because of their calcium carbonate skeleton. This study investigated if a calcareous sponge could synthesize its skeleton (i.e. spicules) under ocean-acidification conditions. Sponge cell aggregates that have the potential to develop into a functional sponge, called primmorphs, were submitted to a 5-day experiment, with two treatments: control (pH 8.1) and acidified conditions (pH 7.6). Primmorphs of the calcareous sponge Paraleucilla magna were able to synthesize a skeleton, even under low pH, and to develop into functional sponges. The spicules had the same shape in both conditions, although the spicules synthesized in low pH were slightly thinner than those in the control. These results suggest that P. magna may be able to survive near-future ocean-acidification conditions.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-06-30.
DOI: 10.1594/pangaea.960522
title: Seawater carbonate chemistry and respiration rate of pteropod Limacina helicina

description: The pteropod Limacina helicina has become an important bioindicator species for the negative impacts of ocean acidification (OA) on marine ecosystems. However, pteropods diversified during earlier high CO2 periods in Earth history and currently inhabit regions that are naturally corrosive to their shells, suggesting that they possess mechanisms to survive unfavourable conditions. Recent work, which is still under considerable debate, has proposed that the periostracum, a thin organic coating on the outer shell, protects pteropods from shell dissolution. Here, we provide direct evidence that shows that damage to the L. helicina periostracum results in dissolution of the underlying shell when exposed to corrosive water for ∼8 d, while an intact periostracum protects the shell from dissolution under the same conditions. This important first line of defence suggests that pteropods are more resistant to OA-induced shell dissolution than is generally accepted.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-07-10.
DOI: 10.1594/pangaea.960154
title: Seawater carbonate chemistry and calcification response of a tropical scleractinian coral to seasonal upwelling conditions

description: Natural processes such as upwelling of deeper-water masses change the physical-chemical conditions of the water column creating localized ocean acidification events that can have an impact on the natural communities. This study was performed in a coral reef system of an archetypical bay within the Tayrona National Natural Park (PNNT) (Colombia), and aimed to quantify net calcification rates of a foundational coral species within a temporal context (6 months) taking into account the dynamics of seasonal upwelling that influence the study area. Net calcification rates of coral fragments were obtained in situ by the alkalinity anomaly technique in short-term incubations (~2.5 h). We found a significant effect of the upwelling on net calcification rates (Gnet) (p &lt; 0.05) with an 42% increase in CaCO3 accretion compared to non-upwelling season. We found an increase in total alkalinity (AT) and dissolved inorganic carbon (DIC) with decreased aragonite saturation (Ωara) for the upwelling months, indicating an influence of the Subtropical Under Water mass (SAW) in the PNNT coral community. Significant negative correlations between net calcification with temperature and Ωara, which indicates a positive response of M. auretenra with the upwelling conditions, thus, acting as “enhancer” of resilience for coral calcification.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-06-30.
DOI: 10.1594/pangaea.960351
title: Seawater carbonate chemistry and biomechanical properties of the skeletal plates of the sea urchin Paracentrotus lividus (Lamarck, 1816)

description: Sea urchins, ecologically important herbivores of shallow subtidal temperate reefs, are considered particularly threatened in a future ocean acidification scenario, since their carbonate structures (skeleton and grazing apparatus) are made up of the very soluble high-magnesium calcite, particularly sensitive to a decrease in pH. The biomechanical properties of their skeletal structures are of great importance for their individual fitness, because the skeleton provides the means for locomotion, grazing and protection from predators. Sea urchin skeleton is composed of discrete calcite plates attached to each other at sutures by organic ligaments. The present study addressed the fate of the sea urchin Paracentrotus lividus (Lamarck, 1816) skeleton in acidified oceans, taking into account the combined effect of reduced pH and macroalgal diet, with potential cascading consequences at the ecosystem level. A breaking test on individual plates of juvenile specimens fed different macroalgal diets has been performed, teasing apart plate strength and stiffness from general robustness. Results showed no direct short-term effect of a decrease in seawater pH nor of the macroalgal diet on single plate mechanical properties. Nevertheless, results from apical plates, the ones presumably formed during the experimental period, provided an indication of a possible diet-mediated response, with sea urchins fed the more calcified macroalga sustaining higher forces before breakage than the one fed the non-calcified algae. This, on the long term, may produce bottom-up effects on sea urchins, leading to potential shifts in the ecosystem equilibrium under an ocean acidified scenario.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-07-06.
DOI: 10.1594/pangaea.960596
title: Seawater carbonate chemistry and survival and growth of macroalgal Fucus vesiculosus germlings

description: Ecological impact of global change is generated by multiple synchronous or asynchronous drivers which interact with each other and with intraspecific variability of sensitivities. In three near-natural experiments, we explored response correlations of full-sibling germling families of the seaweed Fucus vesiculosus towards four global change drivers: elevated CO2 (ocean acidification, OA), ocean warming (OW), combined OA and warming (OAW), nutrient enrichment and hypoxic upwelling. Among families, performance responses to OA and OW as well as to OAW and nutrient enrichment correlated positively whereas performance responses to OAW and hypoxia anti-correlated. This indicates (i) that families robust to one of the three drivers (OA, OW, nutrients) will also not suffer from the two other shifts, and vice versa and (ii) families benefitting from OAW will more easily succumb to hypoxia. Our results may imply that selection under either OA, OW or eutrophication would enhance performance under the other two drivers but simultaneously render the population more susceptible to hypoxia. We conclude that intraspecific response correlations have a high potential to boost or hinder adaptation to multifactorial global change scenarios.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-07-11.
DOI: 10.1594/pangaea.716843
title: Seawater carbonate chemistry and calcification during a study of barrier reef flat in Moorea, French Polynesia, 1998

description: The relative contribution of soft bottoms to the community metabolism (primary production, respiration and net calcification) of a barrier reef flat has been investigated at Moorea (French Polynesia). Community metabolism of the sedimentary area was estimated using in situ incubations in perspex chambers, and compared with estimates of community metabolism of the whole reef flat obtained using a Lagrangian technique (Gattuso et al., 1996. Carbon flux in coral reefs. 1. Lagrangian measurement of community metabolism and resulting air-sea CO2 disequilibrium. Mar. Ecol. Prog. Ser. 145, 109-121). Net organic carbon production (E), respiration (R) and net calcification (G) of sediments were measured by seven incubations performed in triplicate at different irradiance. Respiration and environmental parameters were also measured at four randomly selected additional stations. A model of Photosynthesis-irradiance allowed to calculate oxygen (O2), organic carbon (CO2) and calcium carbonate (CaCO3) evolution from surface irradiance during a diel cycle. As chlorophyll a content of the sediment was not significantly different between stations, primary production of the sediment was considered as homogeneous for the whole lagoon. Thus, carbon production at the test station can be modelled from surface light irradiance. The modelled respiration was two times higher at the test station than the mean respiration of the barrier reef, and thus underestimated sediment contribution to excess production. Sediments cover 40-60% of the surface and accounted for 2.8-4.1% of organic carbon excess production estimated with the modelled R and 21-32% when mean R value was considered. The sedimentary CaCO3 budget was a very minor component of the whole reef budget.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
description: Supplement to: Boucher, Guy; Clavier, Jacques; Hily, Christian; Gattuso, Jean-Pierre (1998): Contribution of soft-bottoms to the community metabolism (primary production and calcification) of a barrier reef flat (Moorea, French Polynesia). Journal of Experimental Marine Biology and Ecology, 225(2), 269-283
DOI: 10.1594/pangaea.960969
title: Seawater carbonate chemistry and experiment on pH effects on coralline-epiphyte complex (Ellisolandia elongata)

description: Coralline algae, a major calcifying component of coastal shallow water communities, have been shown to be one of the more vulnerable taxonomic groups to ocean acidification (OA). Under OA, the interaction between corallines and epiphytes was previously described as both positive and negative. We hypothesized that the photosynthetic activity and the complex structure of non-calcifying epiphytic algae that grow on corallines ameliorate the chemical microenvironmental conditions around them, providing protection from OA. Using mesocosm and microsensor experiments, we showed that the widespread coralline Ellisolandia elongata is less susceptible to the detrimental effects of OA when covered with non-calcifying epiphytic algae, and its diffusive boundary layer is thicker than when not covered by epiphytes. By modifying the microenvironmental carbonate chemistry, epiphytes, facilitated by OA, create micro-scale shield (and refuge) with more basic conditions that may allow the persistence of corallines associated with them during acidified conditions. Such ecological refugia could also assist corallines under near-future anthropogenic OA conditions.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-07-17.
DOI: 10.1594/pangaea.718214
title: Seawater carbonate chemistry and cell numbers during experiments with dinoflagellates, 2007

description: The effects of dissolved inorganic carbon (DIC) on the growth of 3 red-tide dinoflagellates (Ceratium lineatum, Heterocapsa triquetra and Prorocentrum minimum) were studied at pH 8.0 and at higher pH levels, depending upon the pH tolerance of the individual species. The higher pH levels chosen for experiments were 8.55 for C. lineatum and 9.2 for the other 2 species. At pH 8.0, which approximates the pH found in the open sea, the maximum growth in all species was maintained until the total DIC concentration was reduced below ~0.4 and 0.2 mM for C. lineatum and the other 2 species, respectively. Growth compensation points (concentration of inorganic carbon needed for maintenance of cells) were reached at ~0.18 and 0.05 mM DIC for C. lineatum and the other 2 species, respectively. At higher pH levels, maximum growth rates were lower compared to growth at pH 8, even at very high DIC concentrations, indicating a direct pH effect on growth. Moreover, the concentration of bio-available inorganic carbon (CO2 + HCO3-) required for maintenance as well as the half-saturation constants were increased considerably at high pH compared to pH 8.0. Experiments with pH-drift were carried out at initial concentrations of 2.4 and 1.2 mM DIC to test whether pH or DIC was the main limiting factor at a natural range of DIC. Independent of the initial DIC concentrations, growth rates were similar in both incubations until pH had increased considerably. The results of this study demonstrated that growth of the 3 species was mainly limited by pH, while inorganic carbon limitation played a minor role only at very high pH levels and low initial DIC concentrations.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
DOI: 10.1594/pangaea.916129
title: CO2 system variability of the northern Adriatic Sea (12/2014 - 01/2017)

description: Data were collected from December 2014 to January 2017, with 16 oceanographic cruises, along a transect from the mouth of the Po River (Italy) to the area of Rovinj (Croatia), representative of the northern Adriatic Sea. 6 stations were sampled at 4 depths (0.5 m, 10 m, 20 m and 2 m above the bottom) by Niskin bottles. Water samples for temperature, salinity, pH on total scale, total alkalinity, dissolved oxygen, dissolved inorganic nutrients and chlorophyll a were collected and analysed. Temperature was measured by protected reversed thermometers, salinity by high precision salinometer, pH by spectrophometry with purified m-cresol purple, total alkalinity by open cell potentiometric titration, dissolved oxygen by winkler method, nutrients by spetrophotometric methods, chlorphyll a by acetone extraction and fluorometric detection.
DOI: 10.1594/pangaea.931749
title: Seawater carbonate chemistry and growth of Saccharina latissima and herbivory of Lacuna vincta

description: The laminarialean kelp, Saccharina latissima, is a common macroalgae along rocky shorelines that is also frequently used in aquaculture. This study examined how ocean acidification may alter the growth of S. latissima as well as grazing on S. latissima by the gastropod, Lacuna vincta. Under elevated nutrients, S. latissima experienced significantly enhanced growth at pCO2 levels &gt;1,200 µatm compared to ambient pCO2 (400 µatm). Elevated pCO2 (&gt;830 µatm) also significantly reduced herbivory of L. vincta grazing on S. latissima relative to ambient pCO2. There was no difference in grazing of S. latissima previously grown under elevated or ambient pCO2, suggesting lowered herbivory was due to harm to the gastropods rather than alteration of the biochemical composition of the kelp. Decreased herbivory was specifically elicited when L. vincta were exposed to elevated pCO2 in the absence of food for &gt;18 h prior to grazing, with reduced grazing persisting 72 h. Elevated growth of S. latissima and reduced grazing by L. vincta at 1,200 µatm pCO2 combined to increase net growth rates of S. latissima by more than four-fold relative to ambient pCO2. L. vincta consumed 70% of daily production by S. latissima under ambient pCO2 but only 38% and 9% at 800 µatm and 1,200 µatm, respectively. Collectively, decreased grazing by L. vincta coupled with enhanced growth of S. latissima under elevated pCO2 demonstrates that increased CO2 associated with climate change and/or coastal processes will dually benefit commercially and ecologically important kelps by both promoting growth and reducing grazing pressure.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-05-18.
DOI: 10.1594/pangaea.914653
title: Seawater carbonate chemistry and hypoxia tolerance and blood chemistry characteristics of European sea bass

description: Global environmental change is increasing hypoxia in aquatic ecosystems. During hypoxic events, bacterial respiration causes an increase in carbon dioxide (CO2) while oxygen (O2) declines. This is rarely accounted for when assessing hypoxia tolerances of aquatic organisms. We investigated the impact of environmentally realistic increases in CO2 on responses to hypoxia in European sea bass (Dicentrarchus labrax). We conducted a critical oxygen (O2crit) test, a common measure of hypoxia tolerance, using two treatments in which O2 levels were reduced with constant ambient CO2 levels (~530 µatm), or with reciprocal increases in CO2 (rising to ~2,500 µatm). We also assessed blood acid-base chemistry and haemoglobin-O2 binding affinity of sea bass in hypoxic conditions with ambient (~650 μatm) or raised CO2 (~1770 μatm) levels. Sea bass exhibited greater hypoxia tolerance (~20% reduced O2crit), associated with increased haemoglobin-O2 affinity (~32% fall in P50) of red blood cells, when exposed to reciprocal changes in O2 and CO2. This indicates that rising CO2 which accompanies environmental hypoxia facilitates increased O2 uptake by the blood in low O2 conditions, enhancing hypoxia tolerance. We recommend that when impacts of hypoxia on aquatic organisms are assessed, due consideration is given to associated environmental increases in CO2.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-04-02.
DOI: 10.1594/pangaea.890816
title: Seawater carbonate chemistry and primary productivity, bacterial productivity, and the accumulation of chlorophyll a (Chl a) and particulate organic matter (POM) of coastal marine microbial community in Prydz Bay

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-05-23.
DOI: 10.1594/pangaea.959649
title: Seawater carbonate chemistry and seasonal mesocosm community experiments with warming and acidification treatments in Kiel Outdoor Benthocosms

description: The plea for using more “realistic,” community‐level, investigations to assess the ecological impacts of global change has recently intensified. Such experiments are typically more complex, longer, more expensive, and harder to interpret than simple organism‐level benchtop experiments. Are they worth the extra effort? Using outdoor mesocosms, we investigated the effects of ocean warming (OW) and acidification (OA), their combination (OAW), and their natural fluctuations on coastal communities of the western Baltic Sea during all four seasons. These communities are dominated by the perennial and canopy‐forming macrophyte Fucus vesiculosus—an important ecosystem engineer Baltic‐wide. We, additionally, assessed the direct response of organisms to temperature and pH in benchtop experiments, and examined how well organism‐level responses can predict community‐level responses to the dominant driver, OW. OW affected the mesocosm communities substantially stronger than acidification. OW provoked structural and functional shifts in the community that differed in strength and direction among seasons. The organism‐level response to OW matched well the community‐level response of a given species only under warm and cold thermal stress, that is, in summer and winter. In other seasons, shifts in biotic interactions masked the direct OW effects. The combination of direct OW effects and OW‐driven shifts of biotic interactions is likely to jeopardize the future of the habitat‐forming macroalga F. vesiculosus in the Baltic Sea. Furthermore, we conclude that seasonal mesocosm experiments are essential for our understanding of global change impact because they take into account the important fluctuations of abiotic and biotic pressures.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-06-08.