cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.nd3s7/11
title: Carposina sasakii mitochondrial cox1 in 16 populations 410 individuals

description: Fasta file of mitochondrial cox1 gene sequenced from 16 populations 410 individuals of Carposina sasakii
DOI: 10.5061/dryad.nd3s7/12
title: Coordinates for  the 16 populations 410 individuals of Carposina sasakii

description: Coordinates for the 16 populations 410 individuals of Carposina sasakii
DOI: 10.5061/dryad.nd3s7/2
title: CS_cox1_35hap_2outgroups .fas format

description: mitochondrial haplotypes
DOI: 10.5061/dryad.pd959/35
title: TrimQuadrats.R

description: dependency of Compare_seedlings.R, Fit_Growth_Older_GAM.R, Fit_Growth_Seedlings.R, Fit_Survival_Older.R, Fit_Survival_Seedlings.R.
DOI: 10.5061/dryad.qm419/2
title: R scripts and associated data

description: R script used to analyse the data and all associated datasets required to run the analyses.
DOI: 10.5061/dryad.qm419/3
title: Interactive Figures

description: Interactive figures representing the floral morphospaces (Principal Component Analyses; PCA), providing the opportunity to identify the position of species and individual pictures on the plot and to zoom in for better visualization.
DOI: 10.5061/dryad.qm419/4
title: Picture thumbnails

description: This archive contains picture thumbnails of all the flowers analyzed in the study. Note that they are not the original files used for the analysis.
DOI: 10.5061/dryad.r87p0/18
title: Confidence levels for 1900 and 75% tree cover

description: Raster containing the confidence levels in defining forest and savanna distribution and boundaries for 1900 for forest defined as 75% tree cover threshold and for a probability &gt; 0.5. The confidence levels are expressed between 0 (less confident), and 1 (more confident).
DOI: 10.5061/dryad.r87p0/19
title: Confidence levels for 2000 and 75% tree cover

description: Raster containing the confidence levels in defining forest and savanna distribution and boundaries for 2000 for forest defined as 75% tree cover threshold and for a probability &gt; 0.5. The confidence levels are expressed between 0 (less confident), and 1 (more confident).
DOI: 10.5061/dryad.r87p0/20
title: Confidence levels for 1900 and 65% tree cover

description: Raster containing the confidence levels in defining forest and savanna distribution and boundaries for 1900 for forest defined as 65% tree cover threshold and for a probability &gt; 0.5. The confidence levels are expressed between 0 (less confident), and 1 (more confident).
DOI: 10.5061/dryad.r87p0/21
title: Confidence levels for 2000 and 65% tree cover

description: Raster containing the confidence levels in defining forest and savanna distribution and boundaries for 2000 for forest defined as 65% tree cover threshold and for a probability &gt; 0.5. The confidence levels are expressed between 0 (less confident), and 1 (more confident).
DOI: 10.5061/dryad.sc933/2
title: Coryphophylax data

description: This file contains the raw behavioural data collected on sleeping behaviour of Coryphophylax subristatus and C. brevicaudus from Andaman Islands
DOI: 10.5061/dryad.vj367/1
title: ASTRAL_798_loci_alignments_Gehyra_nana

description: 798 loci alignments using for ASTRAL analysis to create species tree for Gehyra nana and allies.
DOI: 10.5061/dryad.vj367/2
title: RAxML_concatenated_1636_loci_alignments_Gehyra_nana

description: Concatenated alignments of 1636 loci for RAxML phylogenetic analysis of Gehyra nana and allied taxa.
DOI: 10.5061/dryad.vj367/3
title: Morphological_measurements_Gehyra_nana

description: Morphological measurements for 12 morphological traits for Gehyra nana and allied taxa.
DOI: 10.5061/dryad.vj367/4
title: BPP3_Analyses_Gehyra_nana

description: Input and results files for BPP3 analyses run on four different subsets of Gehyra nana taxa, to test for independence of lineages. Analyses were run twice for each subset of lineages. See Table S2 for lineage subset details.
DOI: 10.17632/2z8c66h6s4.2
title: Data for: An analysis of cumulative risks based on biomonitoring data for six phthalates using the Maximum Cumulative Ratio

description: There are three files. Reyes_EnvironInter_Phthalates_MCR.CSV - Provides the raw data downloaded from NHANES and calculated findings (including dose, hazard quotients, hazard indices, and MCR values) for each individual considered in the analysis. Reyes_EnvironInter_Phthalates_MCR_definitions.csv - Provides definitions for the parameters names used in Reyes_EnvironInter_Phthalates_MCR.CSV. Reyes_EnvironInter_Phthalates_metabolites.csv - Provides additional data used to determine the doses of metabolites.
DOI: 10.17632/pck57tmt7t.1
title: Data for: Citizen Science Benefits Coral Reef Restoration Activities

description: Rescue a Reef Expeditions as an Education Tool To assess the education value and impact, and the satisfaction level of RAR expeditions, we developed a survey instrument using Google Forms (Appendix A). Upon completion of each expedition, the survey was distributed via email to participants. Repeat participants were not asked to respond more than once. The survey was designed to record information on: 1) volunteer demographics (e.g., age, sex, diving experience); 2) prior knowledge of reef ecology and threats; 3) expedition satisfaction; and 4) knowledge acquired during the expedition. Efficacy of the Coral Restoration conducted by Citizen Scientists While the primary goal of the RAR expeditions is education and outreach, participants also contribute directly to reef restoration through coral transplantation. Thus, we evaluated whether the corals outplanted by citizen scientists had the same survivorship as corals outplanted by trained restoration scientists. Trained restoration scientists had a minimum of 6 months of experience conducting coral outplanting. We hypothesized there would be no difference in coral mortality between outplants deployed by the two groups. Therefore, we conducted a paired field experiment where A. cervicornis colonies of the same size (15-25 cm in total linear extension) were outplanted by expert restoration practitioners using the same methodologies 1-6 days after the corresponding RAR expedition. This experiment was conducted on three reefs in the vicinity of Key Biscayne, Miami, Florida, USA, with 50 staghorn corals outplanted by each group (citizen scientists and experts) on each reef (Emerald Reef (9.7 m; N 25.674, W 80.097), Barge Reef (5.5 m; N 25.676, W 80.101), and Diver’s Paradise Reef (5.2 m; N 25.660, W 80.097)). Corals were labeled with a numbered tag for tracking (Fig. 1e). One month after outplanting, visual surveys of the restored corals were conducted to evaluate coral status, estimated as the proportion of living tissue (0-100%) for each coral (Fig. 1f). All corals outplanted had 100% live tissue cover at the time of deployment. Percent tissue mortality was compared between citizen scientists and experts using a Wilcoxon test.
DOI: 10.17632/pck57tmt7t.2
title: Data for: Citizen Science Benefits Coral Reef Restoration Activities

description: Rescue a Reef Expeditions as an Education Tool To assess the education value and impact, and the satisfaction level of RAR expeditions, we developed a survey instrument using Google Forms (Appendix A). Upon completion of each expedition, the survey was distributed via email to participants. Repeat participants were not asked to respond more than once. The survey was designed to record information on: 1) volunteer demographics (e.g., age, sex, diving experience); 2) prior knowledge of reef ecology and threats; 3) expedition satisfaction; and 4) knowledge acquired during the expedition. Efficacy of the Coral Restoration conducted by Citizen Scientists While the primary goal of the RAR expeditions is education and outreach, participants also contribute directly to reef restoration through coral transplantation. Thus, we evaluated whether the corals outplanted by citizen scientists had the same survivorship as corals outplanted by trained restoration scientists. Trained restoration scientists had a minimum of 6 months of experience conducting coral outplanting. We hypothesized there would be no difference in coral mortality between outplants deployed by the two groups. Therefore, we conducted a paired field experiment where A. cervicornis colonies of the same size (15-25 cm in total linear extension) were outplanted by expert restoration practitioners using the same methodologies 1-6 days after the corresponding RAR expedition. This experiment was conducted on three reefs in the vicinity of Key Biscayne, Miami, Florida, USA, with 50 staghorn corals outplanted by each group (citizen scientists and experts) on each reef (Emerald Reef (9.7 m; N 25.674, W 80.097), Barge Reef (5.5 m; N 25.676, W 80.101), and Diver’s Paradise Reef (5.2 m; N 25.660, W 80.097)). Corals were labeled with a numbered tag for tracking (Fig. 1e). One month after outplanting, visual surveys of the restored corals were conducted to evaluate coral status, estimated as the proportion of living tissue (0-100%) for each coral (Fig. 1f). All corals outplanted had 100% live tissue cover at the time of deployment. Percent tissue mortality was compared between citizen scientists and experts using a Wilcoxon test.
DOI: 10.17632/rv9xbvscss.2
title: Data for: Oxygen isotope reservoirs in the outer asteroid belt inferred from oxygen isotope systematics of chondrules, isolated forsterite and olivine grains in Tagish Lake-type carbonaceous chondrites, WIS 91600 and MET 00432

description: Oxygen isotope and EPMA data of chondrules, isolated forsterites and olivines. 3-isotope diagrams of each chondrules.
DOI: 10.17632/rv9xbvscss.3
title: Data for: Oxygen isotope reservoirs in the outer asteroid belt inferred from oxygen isotope systematics of chondrule olivines, isolated forsterite and olivine grains in Tagish Lake-type carbonaceous chondrites, WIS 91600 and MET 00432

description: Oxygen isotope and EPMA data of chondrules, isolated forsterites and olivines. 3-isotope diagrams of each chondrules.
DOI: 10.17632/x3rgk42yg7.1
title: Data for: Preparation of cyclic carbonate via cycloaddition of CO2 on epoxide using amine-functionalized SAPO-34 as catalyst

description: I have been working in the area of heterogeneous catalyst development for the past 20 years.
DOI: 10.17632/x3rgk42yg7.2
title: Data for: Preparation of cyclic carbonate via cycloaddition of CO2 on epoxide using amine-functionalized SAPO-34 as catalyst

description: I have been working in the area of heterogeneous catalyst development for the past 20 years.
DOI: 10.5061/dryad.1jd40.1
title: Data from: Similarity in temporal variation in sex-biased dispersal over short and long distances in the dark-eyed junco, Junco hyemalis
DOI: 10.5061/dryad.1jd40.1/1.1
title: Junco hyemalis microsatellite data

description: This file includes microsatellite data for adult male and female juncos captured on Salt Pond Mountain from 1997-2007. Also included are sex and age of these adult nesting birds and their nest locations (UTMs).
DOI: 10.5061/dryad.1jd40.1/2.1
title: Mark-recapture locations (Junco hyemalis)

description: This file includes mark-recapture locations for nestlings banded in the nest on Salt Pond Mountain, VA from 1996-2006 that were also recaptured or nested the next year as adults. Included are band number, hatch year, sex of the individual, natal nest location, capture location, and first nest location.
DOI: 10.5061/dryad.1jd40.2/1.2
title: Junco hyemalis microsatellite data

description: This file includes microsatellite data for adult male and female juncos captured on Salt Pond Mountain from 1997-2007. Also included are sex and age of these adult nesting birds and their nest locations (UTMs).
DOI: 10.5061/dryad.1jd40.2/2.2
title: Mark-recapture locations (Junco hyemalis)

description: This file includes mark-recapture locations for nestlings banded in the nest on Salt Pond Mountain, VA from 1996-2006 that were also recaptured or nested the next year as adults. Included are band number, hatch year, sex of the individual, natal nest location, capture location, and first nest location.
DOI: 10.5061/dryad.1r170/1
title: BT_hummingbird_data

description: BT_hummingbird_data is an excel sheet with two tabs of data. The first tab - individual_data - contains information about each male's morphology, display characteristics, plumage patch size, and chronological information. The second tab - display-color_data - contains information about each male's individual displays; specifically the angular distances he moved, the angles at which he oriented himself relative to the female, and the photometric variables (luminance, UV cone stimulation, SW cone stimulation, MW cone stimulation, and LW cone stimulation).
DOI: 10.5061/dryad.35rt5/1
title: JAE-2017-00488_data
DOI: 10.5061/dryad.37bj2/36
title: C0019PET2_DICOM

description: Image data from single PET scan
DOI: 10.5061/dryad.37bj2/37
title: C0020PET1_DICOM

description: Image data from single PET scan
DOI: 10.5061/dryad.37bj2/38
title: C0020PET2_DICOM

description: Image data from single PET scan
DOI: 10.5061/dryad.37bj2/39
title: C0021PET1_DICOM

description: Image data from single PET scan
DOI: 10.5061/dryad.37bj2/40
title: C0021PET2_DICOM

description: Image data from single PET scan
DOI: 10.5061/dryad.37bj2/41
title: C0022PET1_DICOM

description: Image data from single PET scan
DOI: 10.5061/dryad.37bj2/42
title: C0022PET2_DICOM

description: Image data from single PET scan
DOI: 10.5061/dryad.3k8m3/4
title: All Code and Data

description: All Code and Data
DOI: 10.5061/dryad.69v95/1
title: Poulson_supplemental data file_persistence
DOI: 10.5061/dryad.7536h67/1
title: Species and community data

description: The excel spreadsheet has four tabs.  The first tab (Data by year) contains data at the community level that was collected in different years.  These data include 15N recovery (as shown in Figure 1 and Figure S3), nitrogen content in different plant parts (shown in Figure S1 and S4) and resorption efficiency (shown in Figure S7). The second tab (Community data) contains measurements at the community level including shoot biomass (averaged across years), community stability of plant biomass production, the parameter values from equation 2, including community N turnover, and community 15N atom% measured in different years, used for equation 2.  These data are shown in Figure 3, Figure 5, Figure S2, and Figure S6).  The third tab (Species data), contains the same data as the Community data, but now at the species level (shown in Figure 2 and Figure S5).  The fourth tab contains the meta data.
DOI: 10.5061/dryad.83q32/1
title: 2012_song
DOI: 10.5061/dryad.83q32/2
title: 1975_song
DOI: 10.5061/dryad.873c4/1
title: Phylogenetic hypotheses of relationships of Arcius including A. ilerdensis

description: Five most parsimonious trees once Arcius ilerdensis n. sp. is included. The strict consensus for these five trees is shown in Figure 10.4.
DOI: 10.5061/dryad.873c4/3
title: Newick trees

description: Newick format for trees from Figures 10, 11 and S1.
DOI: 10.5061/dryad.873c4/4
title: Matrix

description: Matrix of 53 dental characters and 13 paromomyid species
DOI: 10.5061/dryad.8cq43/5
title: R code for modelling the effect of sample size

description: Files needed for this code are either made within it or in 'Isotope scaling curves.R' from the original data.
DOI: 10.5061/dryad.8hp51/1
title: Sampling information and sequences of three gene markers
DOI: 10.5061/dryad.9j0ks22/1
title: DeerDayData
DOI: 10.5061/dryad.9j0ks22/2
title: DeerNightData
DOI: 10.5061/dryad.cg464/1
title: Foraging preferences

description: This file contains the data used to analyse the foraging preferences of buff-footed antechinus (Antechinus mysticus) foraging along narrow and wide beams of varying length. It contains: individual antechinus ID, sex, mass (g), beam type, beam diameter (mm), beam length (m), beam position within the experimental enclosure, proportion of food eaten from the platform at the end of the beam, proportion of time spent at the platform at the end of the beam, and proportion of total visits made to the platform at the end of the beam.
DOI: 10.5061/dryad.cg464/2
title: Escape behaviour

description: This file contains the stride-by-stride data used to analyse the escape speeds and behavioural decisions of buff-footed antechinus (Antechinus mysticus) escaping along narrow and wide beams. It contains: individual antechinus ID, sex, mass (g), beam diameter (mm), trial number, stride number, maximum stride velocity (ms-1), presence of a slip, time to return to 1.1 ms-1 after the slip, strides to return to 1.1 ms-1 after the slip, and whether or not the animal ever returned to 1.1 ms-1 after the slip.
DOI: 10.5061/dryad.cg464/3
title: Foraging behaviour and experiment comparisions

description: This file contains the data used to analyse the foraging movement speeds and behavioural decisions of buff-footed antechinus (Antechinus mysticus) foraging on narrow and wide beams. It also contains comparative data for escaping antechinus, to compare foraging and escape movement decisions. It contains: individual antechinus ID, sex, experiment (foraging or escaping), mass (g), beam type, beam diameter (mm), beam length (m), trial number, movement speed (ms-1, mean speed over first 20cm of the beam), presence of a slip, number of slips, and direction of movement.
DOI: 10.5061/dryad.d6q87/1
title: Genotypes and sequences of sampled individuals

description: Microsatellite genotypes in an excel sheet and all sequences obtained in fasta format.
DOI: 10.5061/dryad.db56v/40
title: gold_80nm_low-concentration_glycerol_water_5_to_5

description: single particle tracking of a 80nm gold nanoparticle represented by a single caustic dispersed in a glycerol-water mixture (5:5)
DOI: 10.5061/dryad.f53s5/1
title: Supplementary-Material_Tesserae-Segmentation

description: Supplementary data to reproduce and understand key results from the related publication, including original image data and processed data. In particular, sections from hyomandibulae harvested from specimens of round stingray Urobatis halleri, donated from another study (DOI: 10.1002/etc.2564). Specimens were from sub-adults/adults collected by beach seine from collection sites in San Diego and Seal Beach, California, USA. The hyomandibulae were mounted in clay, sealed in ethanol-humidified plastic tubes and scanned with a Skyscan 1172 desktop μCT scanner (Bruker μCT, Kontich, Belgium) in association with another study (DOI: 10.1111/joa.12508). Scans for all samples were performed with voxel sizes of 4.89 μm at 59 kV source voltage and 167 μA source current, over 360◦ sample 120 rotation. For our segmentations, the datasets were resampled to a voxel size of 9.78 μm to reduce the size of the images and speed up processing. In addition, the processed data that was generated with the visualization software Amira with techniques described in the related publication based on the mentioned specimens.
DOI: 10.5061/dryad.g68k008/10
title: MERGED set of SNPs MAP

description: This file contains the SNP position data
in the Plink 'map' format for the 169066 SNPs before
filtering.  See Table 1 in the manuscript
DOI: 10.5061/dryad.g68k008/11
title: MERGED clean set of genotypes PED

description: This file contains the filtered set of
genotypes and sample information for the 1021 samples
(88 Mex Wolves + 299 gray wolves + 634 domestic dogs).
See Table 1 in the manuscript.  The format is in the
standard PLINK ped format.
DOI: 10.5061/dryad.g68k008/12
title: MERGED clean set of SNPs MAP

description: This file contains the SNP position data
in the Plink 'map' format for the 118287 SNPs after
filtering.  See Table 1 in the manuscript
DOI: 10.5061/dryad.g68k008/13
title: MERGED clean pruned set of genotypes PED

description: This file contains the filtered set of
genotypes and sample information for the 1021 samples
(88 Mex Wolves + 299 gray wolves + 634 domestic dogs).
See Table 1 in the manuscript.  The format is in the
standard PLINK ped format.
DOI: 10.5061/dryad.g68k008/14
title: MERGED clean pruned set of SNPs MAP

description: This file contains the SNP position data
in the Plink 'map' format for the 74876 SNPs after
filtering and LD pruning.  See Table 1 in the manuscript
DOI: 10.5061/dryad.g68k008/15
title: LampLD 3-way local admixture results and phased genotypes

description: This file, once unpacked, contains the 
results of the local ancestry analysis using LAMP-LD v1.3.
In addition to the numerous output files,
there is a folder for each of the 38 chromosomes.  Each
chromosome's folder contains the LAMP-LD results.  Most
importantly, for each chromosome the phased genotypes
generated using Beagle are found in the files
chr#_phased.txt.  I recommend following the code
described at the GitHub page
https://github.com/rfitak/Mexican_Wolf_SNPs
to know exactly what each of the files represents.
DOI: 10.5061/dryad.g68k008/6
title: Mexican Wolf Sample Spreadsheet

description: A simple excel spreadsheet to convert sample IDs between BeadChip IDs, studbook numbers, and museum numbers
DOI: 10.5061/dryad.g68k008/9
title: MERGED set of genotypes PED

description: This file contains the unfiltered set of
genotypes and sample information for the 1094 samples
(89 Mex Wolves + 371 gray wolves + 634 domestic dogs).
See Table 1 in the manuscript.  The format is in the
standard PLINK ped format.
DOI: 10.5061/dryad.jh3kk/1
title: Supplementary tables and figures

description: Supplementary material for "Homogenization of populations in the wildflower Texas bluebonnet (Lupinus texensis)."
DOI: 10.5061/dryad.jh3kk/2
title: Main parameters for STRUCTURE run K=1 to K=5
DOI: 10.5061/dryad.jh3kk/3
title: STRUCTURE input file
DOI: 10.5061/dryad.jh3kk/4
title: Unfiltered SNPs
DOI: 10.5061/dryad.jh3kk/5
title: Filtered SNPs
DOI: 10.5061/dryad.jh3kk/6
title: De novo reference assembly
DOI: 10.5061/dryad.p412r16/1
title: SI1

description: Appendix SI1 Study site names, study site codes, location, area and altitude
DOI: 10.5061/dryad.qv437/1
title: LH TradeOffs_Data

description: Data for Rapkin et al (2017) "The geometry of nutrient-space based life-history trade-offs: sex-specific effects of macronutrient intake on the trade-off between encapsulation ability and reproductive effort in decorated crickets". Includes data for Experiment 1: No Choice Feeding and Experiment 2: Choice Feeding.
DOI: 10.5061/dryad.r4454/1
title: Phytoplankton cell densities by scanning flow cytometry and environmental variation across depths from Lake Greifensee, Switzerland, in 2014 and 2015

description: This is a high-frequency dataset consisting of estimates of phytoplankton cell density every 4 hours during the summer and autumn of 2014 and 2015, measured using scanning flow cytometry. It also includes associated environmental variables, some of which were measured at longer time scales, such as once to twice a week (as in the case of zooplankton and dissolved nutrients).
DOI: 10.5061/dryad.r4454/2
title: Phytoplankton cell densities by microscopy and environmental variation from Lake Greifensee, Switzerland, from 1984 to 2016

description: This is a dataset consisting of estimates of phytoplankton cell density every month from March 1984 to June 2016, measured using microscopy. It also includes associated environmental variables, most of which were measured at the same location and approximately the same time (as in the case of zooplankton densities and dissolved nutrients). Irradiance measurements have been estimated separately, based on published estimates from a nearby site (see paper for details). For the purpose of analysis, dates have been rounded to the beginning of the nearest month, and where duplicates emerge from this rounding, values have been averaged between the two.
DOI: 10.5061/dryad.s46t627/14
title: 14_Response-intensity relationship of the dark-adapted compound eyes of the wood tiger moth (Arctia plantaginis) determined by electroretinograms
DOI: 10.5061/dryad.s46t627/15
title: 15_Response-intensity relationship of the dark-adapted compound eyes of the wood tiger moth (Arctia plantaginis) determined by electroretinograms