cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1032772.v2
title: Testing Instantaneous Causality in Presence of Nonconstant Unconditional Covariance

description: This article investigates the problem of testing instantaneous causality between vector autoregressive (VAR) variables with time-varying unconditional covariance. It is underlined that the standard test does not control the Type I errors, while the tests with White and heteroscedastic autocorrelation consistent (HAC) corrections can suffer from a severe loss of power when the covariance is not constant. Consequently, we propose a modified test based on a bootstrap procedure. We illustrate the relevance of the modified test through a simulation study. The tests considered in this article are also compared by investigating the instantaneous causality relations between U.S. macroeconomic variables.
DOI: 10.6084/m9.figshare.1032772.v1
title: Testing Instantaneous Causality in Presence of Non Constant Unconditional Covariance

description: The problem of testing instantaneous causality between Vector Autoregressive (VAR) variables with time-varying unconditional covariance is investigated. It is underlined that the standard test does not control the type I errors, while the tests with White (1980) and Heteroscedastic Autocorrelation Consistent (HAC) corrections can suffer from a severe loss of power when the covariance is not constant. Consequently a modified test based on a bootstrap procedure is proposed. The relevance of the modified test is illustrated through a simulation study. The tests considered in this paper are also compared by investigating the instantaneous causality relations between US macroeconomic variables.
DOI: 10.6084/m9.figshare.1032775.v2
title: Vent tubeworm condition metadata: A Canadian Healthy Oceans Network, Population Connectivity project, PC-11

description: Metadata for Candice St Germain MSc thesis data: subject, location
DOI: 10.6084/m9.figshare.1032755
title: Toward a New Paradigm for Tailings Phytostabilization—Nature of the Substrates, Amendment Options, and Anthropogenic Pedogenesis

description: Base metal tailings (BMTs) are normally sulfidic and contain high abundance of residue metals. Their adverse impacts on the environment can last for decades to centuries if without appropriate stabilization. While in situ phytostabilization has been thought to be a promising approach to stabilize surface tailings, few studies have reported success in constructing a sustainable plant community in BMTs so far, implying that a new paradigm involving a sophisticated understanding of the nature of BMTs is needed for BMTs phytostabilization. Using a property database of BMTs worldwide built in this study as a backdrop, this review explores how BMTs are different from normal soils and how these differences influence the strategies of BMTs phytostabilization. It is found that BMTs are mineralogically and chemically different from natural soils, which endows BMTs with unstable geochemistry and inherent extreme toxicity. Studies have documented that amendment options and soil development in BMTs phytostabilization are largely constrained by these abiotic factors. From a viewpoint of pedogenesis, BMTs can be seen as novel parent materials rather than soil. Accordingly, we propose that in BMTs phytostabilization, extensive engineering efforts are required to increase the biocapacity of tailings (i.e., anthropogenic pedogenesis) rather than focus on the selection and establishment of plants.
DOI: 10.6084/m9.figshare.1032775.v1
title: Vent tubeworm condition metadata: a CHONE project PC-11

description: Metadata for Candice St Germain MSc thesis data: subject, location
DOI: 10.6084/m9.figshare.1032741
title: Assessing scholarly communication and research data training needs

description: Published version: Megan M. Bresnahan, Andrew M. Johnson, (2013) "Assessing scholarly communication and research data training needs", Reference Services Review, Vol. 41 Iss: 3, pp.413 - 433 Abstract: Purpose – This study aims to develop a systematic approach for assessing local training needs in order to reskill liaison librarians for new roles in scholarly communication and research data management. Design/methodology/approach – This study followed a training needs assessment approach to develop a survey instrument that was administered electronically to liaison librarians. Survey data were analysed to create an overall prioritization score used to rank local training topics in terms of need. Additional data will inform the design, including formats, of a training agenda to meet these needs. Findings – Survey results indicated that training for research data topics should be prioritized and addressed using hands-on methods that would allow liaison librarians to develop tangible skills directly applicable to individual outreach activities. Research limitations/implications – Training priorities often involve factors beyond the scope of this training needs assessment methodology. This methodology also presupposes a list of potential training topics. All training efforts resulting from this study will be assessed in order to determine the effectiveness of the initial interventions and inform the next steps in this iterative training agenda. Practical implications – Involving potential trainees in the prioritization and development of a training agenda provides valuable information and may lead to increased receptivity to training. Originality/value – This study provides a model for academic libraries to use to assess training needs in order to reskill current staff to adapt to a rapidly changing research and scholarly communication landscape.
DOI: 10.6084/m9.figshare.1032721
title: test.OUT.R2.fastq.zip

description: Test "output" data for PIMMS pipeline
DOI: 10.6084/m9.figshare.1032741.v1
title: Assessing scholarly communication and research data training needs

description: Published version: Megan M. Bresnahan, Andrew M. Johnson, (2013) "Assessing scholarly communication and research data training needs", Reference Services Review, Vol. 41 Iss: 3, pp.413 - 433 Abstract: Purpose – This study aims to develop a systematic approach for assessing local training needs in order to reskill liaison librarians for new roles in scholarly communication and research data management. Design/methodology/approach – This study followed a training needs assessment approach to develop a survey instrument that was administered electronically to liaison librarians. Survey data were analysed to create an overall prioritization score used to rank local training topics in terms of need. Additional data will inform the design, including formats, of a training agenda to meet these needs. Findings – Survey results indicated that training for research data topics should be prioritized and addressed using hands-on methods that would allow liaison librarians to develop tangible skills directly applicable to individual outreach activities. Research limitations/implications – Training priorities often involve factors beyond the scope of this training needs assessment methodology. This methodology also presupposes a list of potential training topics. All training efforts resulting from this study will be assessed in order to determine the effectiveness of the initial interventions and inform the next steps in this iterative training agenda. Practical implications – Involving potential trainees in the prioritization and development of a training agenda provides valuable information and may lead to increased receptivity to training. Originality/value – This study provides a model for academic libraries to use to assess training needs in order to reskill current staff to adapt to a rapidly changing research and scholarly communication landscape.
DOI: 10.6084/m9.figshare.1032720
title: test.OUT.R1.fastq.zip

description: Test "output" data for PIMMS pipeline
DOI: 10.6084/m9.figshare.1032721.v1
title: test.OUT.R2.fastq.zip

description: Test "output" data for PIMMS pipeline
DOI: 10.6084/m9.figshare.1032755.v1
title: Toward a New Paradigm for Tailings Phytostabilization – Nature of the Substrates, Amendment Options and Anthropogenic Pedogenesis

description: Base metal tailings (BMT) are normally sulfidic and contain high abundance of residue metals. Their adverse impacts on the environment can last for decades to centuries if without appropriate stabilization. While in situ phytostabilization has been thought to be a promising approach to stabilize surface tailings, few studies have reported a success in constructing a sustainable plant community in BMT so far, implying that a new paradigm involving a sophisticated understanding of the nature of BMT is needed for BMT phytostabilization. Using a property database of BMT worldwide built in this study as a backdrop, this review explores how BMT are different from normal soils and how these differences influence the strategies of BMT phytostabilization. It is found that BMT are mineralogically and chemically different from natural soils, which endows BMT with unstable geochemistry and inherent extreme toxicity. Studies have documented that amendment options and soil development in BMT phytostabilization are largely constrained by these abiotic factors. From a viewpoint of pedogenesis, BMT can be seen as novel parent materials rather than soil. Accordingly, we propose that in BMT phytostabilization, extensive engineering efforts are required to increase the biocapacity of tailings (i.e., anthropogenic pedogenesis) rather than focus on the selection and establishment of plants.
DOI: 10.6084/m9.figshare.1032719
title: S.uberis.gff

description: test GFF file for PIMMS pipeline
DOI: 10.6084/m9.figshare.1032755.v3
title: Toward a New Paradigm for Tailings Phytostabilization—Nature of the Substrates, Amendment Options, and Anthropogenic Pedogenesis

description: Base metal tailings (BMTs) are normally sulfidic and contain high abundance of residue metals. Their adverse impacts on the environment can last for decades to centuries if without appropriate stabilization. While in situ phytostabilization has been thought to be a promising approach to stabilize surface tailings, few studies have reported success in constructing a sustainable plant community in BMTs so far, implying that a new paradigm involving a sophisticated understanding of the nature of BMTs is needed for BMTs phytostabilization. Using a property database of BMTs worldwide built in this study as a backdrop, this review explores how BMTs are different from normal soils and how these differences influence the strategies of BMTs phytostabilization. It is found that BMTs are mineralogically and chemically different from natural soils, which endows BMTs with unstable geochemistry and inherent extreme toxicity. Studies have documented that amendment options and soil development in BMTs phytostabilization are largely constrained by these abiotic factors. From a viewpoint of pedogenesis, BMTs can be seen as novel parent materials rather than soil. Accordingly, we propose that in BMTs phytostabilization, extensive engineering efforts are required to increase the biocapacity of tailings (i.e., anthropogenic pedogenesis) rather than focus on the selection and establishment of plants.
DOI: 10.6084/m9.figshare.1032718
title: 0140J.dna

description: Fasta format test genome for PIMMS pipeline
DOI: 10.6084/m9.figshare.1032719.v1
title: S.uberis.gff

description: test GFF file for PIMMS pipeline
DOI: 10.6084/m9.figshare.1032716
title: test.IN.R2.fastq.zip

description: test "input" data for PIMMS pipeline
DOI: 10.6084/m9.figshare.1032717
title: test.IN.R1.fastq.zip

description: test "input" data for PIMMS pipeline
DOI: 10.6084/m9.figshare.1032718.v1
title: 0140J.dna

description: Fasta format test genome for PIMMS pipeline
DOI: 10.6084/m9.figshare.1032755.v2
title: Toward a New Paradigm for Tailings Phytostabilization – Nature of the Substrates, Amendment Options and Anthropogenic Pedogenesis

description: Base metal tailings (BMT) are normally sulfidic and contain high abundance of residue metals. Their adverse impacts on the environment can last for decades to centuries if without appropriate stabilization. While in situ phytostabilization has been thought to be a promising approach to stabilize surface tailings, few studies have reported a success in constructing a sustainable plant community in BMT so far, implying that a new paradigm involving a sophisticated understanding of the nature of BMT is needed for BMT phytostabilization. Using a property database of BMT worldwide built in this study as a backdrop, this review explores how BMT are different from normal soils and how these differences influence the strategies of BMT phytostabilization. It is found that BMT are mineralogically and chemically different from natural soils, which endows BMT with unstable geochemistry and inherent extreme toxicity. Studies have documented that amendment options and soil development in BMT phytostabilization are largely constrained by these abiotic factors. From a viewpoint of pedogenesis, BMT can be seen as novel parent materials rather than soil. Accordingly, we propose that in BMT phytostabilization, extensive engineering efforts are required to increase the biocapacity of tailings (i.e., anthropogenic pedogenesis) rather than focus on the selection and establishment of plants.
DOI: 10.6084/m9.figshare.1032715
title: example.output.directories.and.files.zip

description: example output directories and files created by PIMMS pipeline
DOI: 10.6084/m9.figshare.1032716.v1
title: test.IN.R2.fastq.zip

description: test "input" data for PIMMS pipeline
DOI: 10.6084/m9.figshare.1032717.v1
title: test.IN.R1.fastq.zip

description: test "input" data for PIMMS pipeline
DOI: 10.6084/m9.figshare.1032715.v1
title: example.output.directories.and.files.zip

description: example output directories and files created by PIMMS pipeline
DOI: 10.6084/m9.figshare.1032678
title: Ajuts concedits per publicar en accés obert a la UB - 2010-15

description: Ajuts concedits per publicar en revistes d'accés obert des del setembre de 2010 fins a desembre de 2015 per part del vicerectorat de Política Científica de la Universitat de Barcelona.
DOI: 10.6084/m9.figshare.1032684
title: 7.Phth Calculations

description: Input and output files for 7.Phth.
DOI: 10.6084/m9.figshare.1032684.v1
title: 7.Phth Calculations

description: Input and output files for 7.Phth.
DOI: 10.6084/m9.figshare.1032678.v1
title: Ajuts concedits per publicar en accés obert a la UB

description: Ajuts concedits per publicar en revistes d'accés obert des del setembre de 2010 fins a desembre de 2013 per part del vicerectorat de Política Científica de la Universitat de Barcelona.
DOI: 10.6084/m9.figshare.1032658
title: Gaussian Job Archive for C4H41ClO16

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1032659
title: Gaussian Job Archive for C4H41ClO16

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1032678.v2
title: Ajuts concedits per publicar en accés obert a la UB - 2010-13

description: Ajuts concedits per publicar en revistes d'accés obert des del setembre de 2010 fins a desembre de 2013 per part del vicerectorat de Política Científica de la Universitat de Barcelona.
DOI: 10.6084/m9.figshare.1032659.v1
title: Gaussian Job Archive for C4H41ClO16

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1032658.v1
title: Gaussian Job Archive for C4H41ClO16

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1032678.v4
title: Ajuts concedits per publicar en accés obert a la UB - 2010-15

description: Ajuts concedits per publicar en revistes d'accés obert des del setembre de 2010 fins a desembre de 2015 per part del vicerectorat de Política Científica de la Universitat de Barcelona.
DOI: 10.6084/m9.figshare.1032678.v3
title: Ajuts concedits per publicar en accés obert a la UB - 2010-15

description: Ajuts concedits per publicar en revistes d'accés obert des del setembre de 2010 fins a desembre de 2015 per part del vicerectorat de Política Científica de la Universitat de Barcelona.
DOI: 10.6084/m9.figshare.1032620
title: Improved tolerance to boron deficiency by enhanced expression of the boron transporter BOR2

description: Boron (B) cross-links the pectin polysaccharide rhamnogalacturonan II (RG-II) and thus is important for cell wall structure in plants. B deficiency is an agricultural problem that causes significant losses of crop productivity worldwide. To address this, B deficiency-tolerant plants have been generated using B transporters. With the goal of further improving plant tolerance to low-B conditions, we generated transgenic <i>Arabidopsis thaliana</i> (L.) Heynh. with enhanced expression of BOR2, a B transporter that promotes cross-linking of RG-II and root elongation under low B supply. We generated a DNA construct containing the cauliflower mosaic virus 35S RNA promoter, a native promoter of <i>BOR2</i>, a <i>BOR2</i> gene and green fluorescent protein (GFP) (<i>Pro35S-BOR2:BOR2-GFP</i>), and obtained three independent transgenic lines with relatively high levels of BOR2-GFP expression. In the transgenic lines, BOR2-GFP was expressed mainly in the lateral root caps in the meristem zone and in the epidermal cells in the elongation zone, similar to its expression when driven only by its native promoter. In the <i>Pro35S-BOR2:BOR2-GFP</i> lines, BOR2-GFP was also expressed in various cells in the maturation zone of roots and epidermal cells of shoots, where the expression was hardly detectable in <i>ProBOR2:BOR2-GFP</i> lines. The transgenic lines were cultured under various B concentrations on solid media and it was found that root growth of three lines and shoot growth of two lines were enhanced compared to wild-type plants under low-B conditions. This finding established that enhanced expression of BOR2 leads to improved root growth under low-B conditions. We also examined growth of the transgenic lines under hydroponic conditions. One of the three lines showed better growth and fertility under a low-B condition, while the wild type did not set seeds under the same condition, suggesting the potential utility of BOR2 expression in agricultural applications.
DOI: 10.6084/m9.figshare.1032650
title: High Resolution Figures from Mills et al. 2012 Social Cognitive Affective Neuroscience Article

description: High resolution figures from: Mills, K. L., Lalonde, F., Clasen, L. S., Giedd, J. N., & Blakemore, S.-J. (2012). Developmental changes in the structure of the social brain in late childhood and adolescence. Social Cognitive and Affective Neuroscience.
DOI: 10.6084/m9.figshare.1032620.v1
title: Improved tolerance to boron deficiency by enhanced expression of the boron transporter BOR2

description: Boron (B) cross-links the pectin polysaccharide rhamnogalacturonan II (RG-II) and thus is important for cell wall structure in plants. B deficiency is an agricultural problem that causes significant losses of crop productivity worldwide. To address this, B deficiency-tolerant plants have been generated using B transporters. With the goal of further improving plant tolerance to low-B conditions, we generated transgenic <i>Arabidopsis thaliana</i> (L.) Heynh. with enhanced expression of BOR2, a B transporter that promotes cross-linking of RG-II and root elongation under low B supply. We generated a DNA construct containing the cauliflower mosaic virus 35S RNA promoter, a native promoter of <i>BOR2</i>, a <i>BOR2</i> gene and green fluorescent protein (GFP) (<i>Pro35S-BOR2:BOR2-GFP</i>), and obtained three independent transgenic lines with relatively high levels of BOR2-GFP expression. In the transgenic lines, BOR2-GFP was expressed mainly in the lateral root caps in the meristem zone and in the epidermal cells in the elongation zone, similar to its expression when driven only by its native promoter. In the <i>Pro35S-BOR2:BOR2-GFP</i> lines, BOR2-GFP was also expressed in various cells in the maturation zone of roots and epidermal cells of shoots, where the expression was hardly detectable in <i>ProBOR2:BOR2-GFP</i> lines. The transgenic lines were cultured under various B concentrations on solid media and it was found that root growth of three lines and shoot growth of two lines were enhanced compared to wild-type plants under low-B conditions. This finding established that enhanced expression of BOR2 leads to improved root growth under low-B conditions. We also examined growth of the transgenic lines under hydroponic conditions. One of the three lines showed better growth and fertility under a low-B condition, while the wild type did not set seeds under the same condition, suggesting the potential utility of BOR2 expression in agricultural applications.
DOI: 10.6084/m9.figshare.1032616
title: Gaussian Job Archive for C39H44N2O3SeSi

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1032618
title: Gaussian Job Archive for C52H74N4O10Zn2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1032615
title: Monitoring cues do not predict donations to charity online - Dataset

description: Monitoring cues do not predict donations to charity online
DOI: 10.6084/m9.figshare.1032617
title: Gaussian Job Archive for C39H44N2O3SeSi

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1032618.v1
title: Gaussian Job Archive for C52H74N4O10Zn2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1032616.v1
title: Gaussian Job Archive for C39H44N2O3SeSi

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1032606
title: De novo transcriptome assembly

description: Moreton.et.al.duck.Abyss.Oases.MK.fa.tar.gz
DOI: 10.6084/m9.figshare.1032613
title: de novo assembly of transcriptome of Pekin Duck Anas platyrhynchos domestica.

description: Fasta files of de novo assemblies of transcriptome of Pekin Duck Anas platyrhynchos domestica. <br>See Moreton et al. Submitted Frontiers in Bioinformatics and Computational Biology 20
DOI: 10.6084/m9.figshare.1032617.v1
title: Gaussian Job Archive for C39H44N2O3SeSi

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1032605
title: Moreton.et.al.duck.Abyss.SK.fa.tar.gz

description: Moreton.et.al.duck.Abyss.SK.fa.tar.gz
DOI: 10.6084/m9.figshare.1032605.v1
title: Moreton.et.al.duck.Abyss.SK.fa.tar.gz

description: Moreton.et.al.duck.Abyss.SK.fa.tar.gz
DOI: 10.6084/m9.figshare.1032606.v1
title: De novo transcriptome assembly

description: Moreton.et.al.duck.Abyss.Oases.MK.fa.tar.gz
DOI: 10.6084/m9.figshare.1032615.v1
title: Data S1

description: Add Link
DOI: 10.6084/m9.figshare.1032613.v3
title: de novo assembly of transcriptome of Pekin Duck Anas platyrhynchos domestica.

description: Fasta files of de novo assemblies of transcriptome of Pekin Duck Anas platyrhynchos domestica. <br>See Moreton et al. Submitted Frontiers in Bioinformatics and Computational Biology 20