cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.pp1d41n/4
title: Moran et al. 2019 [Courtship song]
DOI: 10.5061/dryad.q70q40m/1
title: genomes

description: This file contains the fasta files of the three genomes assembled at chromosome level.
DOI: 10.5061/dryad.r2f59f0/1
title: DATAFile_RSOS_ZN

description: Analysis of MWCNT nanocomposite samples and results of MS2 filtration
DOI: 10.5061/dryad.sq85v00/1
title: Raw SNPs

description: VCF format for all SNPs for all individuals
DOI: 10.5061/dryad.sr02fk0/1
title: ChangEtAl_StructureFiles

description: Structure-formatted genotype data used for colony-level and population-level analyses, generated using the Populations module of Stacks v.1.44 with parameters as described in Table S3.
DOI: 10.5061/dryad.sr02fk0/2
title: ChangEtAl_Files_forRelatedness

description: VCF-formatted and Plink-formatted files for each collecting site used for the calculation of within- and between-colony estimates at of genome-wide relatedness. Files were output from the Populations module of Stacks v.1.44, using parameters as described in Table S3.
DOI: 10.5061/dryad.v23v5d2/1
title: Thrinaxodon adult BP/1/7199

description: Images from CT reconstruction of the skull of an adult Thrinaxodon (BP/1/7199) used to score ontogenetic stages of teeth.
DOI: 10.5061/dryad.v23v5d2/2
title: Thrinaxodon young (BP/1/5372)

description: Images from CT reconstruction of the skull of a juvenile Thrinaxodon (BP/1/5372) used to score ontogenetic stages of teeth.
DOI: 10.5061/dryad.v23v5d2/3
title: Galesaurus adult BP/1/5064

description: Images from CT reconstruction of the skull of an adult Galesaurus (BP/1/5064) used to score ontogenetic stages of teeth.
DOI: 10.5061/dryad.v23v5d2/4
title: Galesaurus subadult BP/1/4602

description: Images from CT reconstruction of the skull of a subadult Galesaurus (BP/1/4602) used to score ontogenetic stages of teeth.
DOI: 10.17632/2247ttncmm.1
title: Data for: Quality and duration of unstressed vowels in Polish

description: Vowel duration and vowel formants of Polish stressed and unstressed vowels.
DOI: 10.17632/n7g9294224.1
title: Data for: Risk probability prediction of coal enterprise infrastructure projects from countries along the Belt & Road Initiative

description: An improved artificial fish swarm algorithm (IAFSA) is embedded into cerebellar model articulation controller (CMAC) neural network model.
DOI: 10.5061/dryad.0k90c0v/1
title: Bats

description: Sequences and identifications for all bats.
DOI: 10.5061/dryad.121b453/1
title: Trinity assembled contig files used for Phyluce
DOI: 10.5061/dryad.1n4f0b3/1
title: Granivorous carabids Dryad

description: Table1 for the feeding experiments of Pseudoophonus rufipes fed with seeds of 5 different plant species and Table2: mixed feeding experiment of P.rufipes with Tenebrio molitor and seeds of two different plant species - detection of the food types using general molecular markers
DOI: 10.5061/dryad.2mg67hq/1
title: Some details of experiments

description: The file includes 1. Synthesis of P(PDI-DTT) 2. Schematic of gold-layer sticking technique 3. More photographs of nanotubes
DOI: 10.5061/dryad.2mh70m2/4
title: T_iboga_2.fq.gz

description: The files T_iboga_2.fq.gz.001 and T_iboga_2.fq.gz.002 must be joined into a single file before decompressing. Join the files using the following command indicated for your operating system. Linux/Mac OS X: cat T_iboga_2.fq.gz.* &gt; T_iboga_2.fq.gz Windows: copy /b T_iboga_2.fq.gz.001 + T_iboga_2.fq.gz.002 T_iboga_2.fq.gz
DOI: 10.5061/dryad.5337hv7/1
title: rsfdata_2nd_and_3rd_order_scale

description: data used for estimation of resource selection functions at the second- and third-order scale of selection (Table 3 and 4)
DOI: 10.5061/dryad.5337hv7/2
title: gpsdata

description: gps-positions used to identify the calving sites using the ResidenceTime-function in adehabitatLT in R
DOI: 10.5061/dryad.591sm73/1
title: Matsuo_Inagaki_PeerJ2018_suppdata.tar

description: When this tar.gz file is extracted, you will find three folders (“ML_Bayesian_trees,” “Lepdodinium_RNA-seq” and “alignment_heme_Chla_IPP”) and a compressed FASTA format file (Lepidodinium_RNA-seq.tar.gz). The details of the folders/files are described in README file.
DOI: 10.5061/dryad.5cm7088/2
title: Raw data for experiment 2

description: population size and bioassay data for experimental mesocosms.  See readme file for more details on column headings and example analysis code
DOI: 10.5061/dryad.66mb8nj/11
title: trnLF_TOTAL.trees.MrBayes

description: 6002 trees generated by Bayesian inference with MrBayes for tribe Halimolobeae and the trnL-F dataset.
DOI: 10.5061/dryad.66mb8nj/12
title: ITS+trnLF.con50.MrBayes

description: Bayesian 50% majority-rule consensus trees from 6002 trees generated by Bayesian inference with MrBayes for tribe Halimolobeae and the concatenated ITS + trnL-F dataset.
DOI: 10.5061/dryad.66mb8nj/13
title: ITS+trnLF_TOTAL.trees.MrBayes

description: 6002 trees generated by Bayesian inference with MrBayes for tribe Halimolobeae and the concatenated ITS + trnL-F dataset.
DOI: 10.5061/dryad.66mb8nj/14
title: Appendix 1

description: APPENDIX 1. Specimens examined for morphological studies.
DOI: 10.5061/dryad.66mb8nj/15
title: Appendix 2

description: APPENDIX 2. Taxa and GenBank accession numbers for the ITS and trnL-F sequences used in the phylogenetic analyses. New sequences generated for this study are indicated by the underlined numbers and also include the specimen vouchers.
DOI: 10.5061/dryad.68721fm/1
title: parks_sci_adv_replication

description: Code, data, and readme to replicate results for "Air pollution and visitation at U.S. national parks."
DOI: 10.5061/dryad.794436q/1
title: STRUCTURE_Data_AllIndividuals

description: Input file used in the program STRUCTURE. This file includes data from 1945 SNPs and 81 rosellas.
DOI: 10.5061/dryad.794436q/2
title: STRUCTURE_Data_EasternRosellas

description: Input file used in the program STRUCTURE. This file includes data from  2149 SNPs and 22 eastern rosellas.
DOI: 10.5061/dryad.794436q/3
title: PCA_Data

description: PLINK file used to conduct the Principle Components Analysis (PCA) with the glPCA function in the adegenet R package. This file includes data from 1945 SNPs and 81 individuals.
DOI: 10.5061/dryad.86vt482/1
title: Irradiance data

description: Irradiance data for natural habitat and experimental treatment groups
DOI: 10.5061/dryad.86vt482/2
title: Maratus volans fan reflectance data

description: Hyperspectral color measurements on Maratus volans fan ornaments.
DOI: 10.5061/dryad.86vt482/3
title: Maratus volans mating data

description: Raw data on Maratus volans mating experiment.  Data includes treatment type (full spectrum, minus red spectrum, augmented minus red spectrum), data conducted, copulation occurrence, latency, and mating duration.
DOI: 10.5061/dryad.8br42vr/1
title: SIappendixFigS1

description: Supporting information Fig. S1. Additional views and location of the finding of Desmatochelys padillai FCG-CBP-75 specimen and its eggs, Testudoolithus osspp. (A). Map showing the location of Villa de Leyva town in Colombia (top) and the geology of the region (bottom), as well as the Monsalve hill where the fossil was found, figure modified from (1). B–C. Right lateroventral view of the posterior region of the shell, showing the hypoplastron (red) and portions of the ilium (green); (D–E). Cross view of one of the naturally fractured blocks that composed the fossil specimen, showing details of the hypoplastron, costal bone, a potential peripheral fragment (blue), and a totally recrystallized egg (green). Abbreviations: co, costal bone; hyp, hypoplastron; ili, ilium; pe, peripheral bone.
DOI: 10.5061/dryad.8br42vr/10
title: SIappendixVideoS3SagitalView
DOI: 10.5061/dryad.8br42vr/2
title: SIappendixFigS2

description: Supporting information Fig. S2. Detailed views of Testudoolithus osspp. eggshell morphology, and Desmatochelys padillai FCG-CBP-75 specimen. (A–B). One of the portions of the egg for which a thin section was made, showing well defined shell units, pores, and caverns, 4X magnification; (C–D). Close-up of one of the pores of the eggshell, showing also well define calcite crystals; (E–F). Close-up of the most posterior portion of the carapace of D. padillai FCG-CBP-75, showing the posterior almost parallel to the midline of the carapace projection of the naked costal rib of the most posterior costal bone; (G–H). Close-up of the most posterior portion of the shell of the extant sea turtle Caretta caretta NMW 31531(Natural History Museum, Vienna, Austria), showing the same pattern of naked costal rib posteriorly projected described in (G-H) for D. padillai. Abbreviations: ca, cavern; cr, costal rib; po, pore; rc, recrystallized calcite.
DOI: 10.5061/dryad.8br42vr/8
title: SIappendixVideoS1HorizontalView

description: Data Archiving Statement Video S1. Horizontal view of the specimen FCG-CBP-75
DOI: 10.5061/dryad.8br42vr/9
title: SIappendixVideoS2CoronalView

description: Data Archiving Statement Video S2. Coronal view of the specimen FCG-CBP-75
DOI: 10.5061/dryad.8c94g44/1
title: Tantilla_ND4CytB_phylogeography

description: Alighnment file containing NADH dehydrogenase subunit 4 (ND4) and flanking tRNAs (685 bp) concatenated with cytochrome b (cyt-b, 666 bp) for Conopsis biserialis, Coluber constrictor, Tantilla nigriceps (2 samples), T. wilcoxi (2 samples), T. relicta, T. coronata (2 samples), T. planiceps, and T. gracilis (77 samples). Each sequence id has a unique numerical ID for each sample. See associated manuscript (Table 1) for additional information for each sample.
DOI: 10.5061/dryad.8c94g44/3
title: Tantilla_rag1_gracilis_pruned

description: Alignment file containing sequence (478 bp) of recombination activating gene 1 (RAG-1) for Tantilla wilcoxi, T. coronata, T. relicta, T. nigriceps (2 samples), and T. gracilis (20 samples). Each sequence id has the unique numerical id for each sample. See associated manuscript (Table 1) for additional information for each sample.
DOI: 10.5061/dryad.8c94g44/4
title: Tantilla_SNCAIP_gracilis_pruned

description: Alignment file containing sequence (261 bp) of synuclein alpha interacting protein (SNCAIP) for Tantilla wilcoxi, T. coronata (3 samples), T. nigriceps, and T. gracilis (21 samples). Each sequence id has the unique numerical id for each sample. See associated manuscript (Table 1) for additional information for each sample.
DOI: 10.5061/dryad.8r6p0t2/1
title: Bent-Mate Location-Data-2018

description: Data collected from laboratory based phonotaxis experiments on Gryllus bimaculatus. Behavioural measurements and timings were analyzed using the software B.O.R.I.S.
DOI: 10.5061/dryad.8s3n710/1
title: Microsatellite DNA data for Posidonia australis

description: Microsatellite DNA data (for seven loci) for the seagrass, Posidonia australis, sampled from 13 established meadows (populations 1-13), 2011 floating seed cohorts (populations 14-23), 2012 floating seed cohorts (populations 24-29), and 'seeds of known origin' (populations 30-31).
DOI: 10.5061/dryad.8s3n710/2
title: Distance matrices for Posidonia australis

description: Matrices for correlation between seed dispersal probabilities (left: hydrodynamic model) and inferred seed dispersal events (right: genetic assignment) for 2011 and 2012.
DOI: 10.5061/dryad.cv37539/1
title: Read me (data file explanations)
DOI: 10.5061/dryad.cv37539/2
title: Data file

description: This data file contains all data information.
DOI: 10.5061/dryad.cv37539/3
title: Scripts for text results and Figure 2

description: R syntax to reproduce descriptive results and Figure 2
DOI: 10.5061/dryad.cv37539/4
title: Scripts for functions used in mediation analysis
DOI: 10.5061/dryad.cv37539/5
title: Scripts for mediation analysis

description: R syntax for mediation analysis results in main text.
DOI: 10.5061/dryad.dg49cj7/1
title: Cooperation Data

description: Shoot mass and percent nitrogen in leaf tissue data for plants grown in the greenhouse
DOI: 10.5061/dryad.g12p0j2/10
title: Moatt_et_al_Data_S7

description: Sex-differences in reproduction
DOI: 10.5061/dryad.g12p0j2/11
title: Moatt_et_al_Data_S8

description: Territory Defense Data
DOI: 10.5061/dryad.g12p0j2/12
title: Moatt_et_al_Data_S9

description: Nesting Data
DOI: 10.5061/dryad.g12p0j2/13
title: Moatt_et_al_Data_S10

description: Reproductive Senescence Data
DOI: 10.5061/dryad.g12p0j2/14
title: Moatt_et_al_Data_S11

description: Age First and Age Last predictions
DOI: 10.5061/dryad.g12p0j2/15
title: Moatt_et_al_Data_S12

description: Age Last model predictions
DOI: 10.5061/dryad.g12p0j2/16
title: Moatt_et_al_Data_S13

description: Predictions for Sex-specific reproductive senescence
DOI: 10.5061/dryad.g12p0j2/17
title: Moatt_et_al_Data_S14

description: Nuptial colour data
DOI: 10.5061/dryad.g12p0j2/18
title: Moatt_et_al_Data_S15

description: Length, Weight and Condition Index data.
DOI: 10.5061/dryad.jm8ps6b/1
title: Effect size

description: Data used to calculate effect size (Glass's Δ) of five studies on the impact of artificial light at night (ALAN) on firefly occurrence and/or courtship. Values were obtained published figures by means of WebPlotDigitizer (https://apps.automeris.io/wpd/). Because all studies involve comparison of groups of the same size (e.g. firefly populations before and after ALAN exposure), Glass’s Δ is an appropriate estimate of effect size, as it uses only the standard deviation of the control group (Kline 2013).
DOI: 10.5061/dryad.kj638nt/1
title: Supplementary Figure 1

description: Supplementary Figure 1. Experimental tank used in affiliation trials to assess mate preferences of S. alburnoides females towards AA, QQ and PP males. The pentagonal area at the center corresponds to the neutral “no choice” zone. The proportion of time spent by each female in the dashed areas of each branch was used to index its preference towards each male genomotype, isolated in the peripheral compartments by perforated transparent acrylic plates.
DOI: 10.5061/dryad.kj8kp94/4
title: FloridaPop

description: Florida population genetics file (.ped)
DOI: 10.5061/dryad.kj8kp94/5
title: P-val-for -LD_49LociRevisedRevised

description: P-values for pairwise exact tests.
DOI: 10.5061/dryad.kj8kp94/6
title: SelectedvsWild-expermt

description: .map file for population genomic comparisons of the wild derived mosquitoes.
DOI: 10.5061/dryad.kj8kp94/7
title: SelectedvsWild-expermt

description: .ped file for comparisons of population genomics for field populations from Florida
DOI: 10.5061/dryad.kj8kp94/8
title: YvsNOutlierLoci

description: .bed file for the outlier loci comparing "yes" and "no" phenotypes from wild-derived populations in Florida.
DOI: 10.5061/dryad.m2t17cc/5
title: Wind pollinated plant cover

description: Wind-pollinated plant cover to test the effect of grazing and time
DOI: 10.5061/dryad.m2t17cc/6
title: Generalist pollinated plant cover

description: Generalist insect pollinated plant cover to test the effect of grazing and time in such plants
DOI: 10.5061/dryad.m2t17cc/7
title: Bee pollinated plant cover

description: Cover of plants needing pollination by bees  to test the effect of gazing and time on them
DOI: 10.5061/dryad.m2t17cc/8
title: Plant species richness data

description: Plant species richness at plot level to test the effect of the treatment (grazed vs ungrazed conditions) and time on plant species richness
DOI: 10.5061/dryad.ms7q2q4/1
title: Tutara sampling

description: Photographic and digitisation sampling of tuatara dentary bones for this study. File includes provenance and museum collection information.
DOI: 10.5061/dryad.ms7q2q4/2
title: Tuatara morphometric dataset

description: Procrustes coordinates and centroid size values for digitised tuatara dentary bones. File can be easily modified (instructions included) for conversion into .csv file for input into the geometric morphometric software MorphoJ. File includes keys for the classifier strings used in specimen IDs to classify specimens into groups (e.g. regions, left or right, living or fossil).
DOI: 10.5061/dryad.ms7q2q4/3
title: Supporting Material

description: Supporting Tables and Figures
DOI: 10.5061/dryad.ms7q2q4/4
title: Supplementary Figure 1

description: Supplementary Figure 1
DOI: 10.5061/dryad.ms7q2q4/6
title: Supplementary Figure 2

description: Supplementary Figure 2
DOI: 10.5061/dryad.ms7q2q4/7
title: Supplementary Figure 3

description: Supplementary Figure 3
DOI: 10.5061/dryad.ms7q2q4/8
title: Supplementary Figure 4

description: Supplementary Figure 4
DOI: 10.5061/dryad.pt38f8s/1
title: data
DOI: 10.5061/dryad.sc35630/1
title: MarchettoPowerRhizobiaCoinfectionData.csv

description: These data accompany the paper, “Context-dependent interactions between pathogens and a mutualist affect pathogen fitness and mutualist benefits to hosts” by Katherine Marchetto and Alison Power published in Ecology.
DOI: 10.5061/dryad.tv28j5c/1
title: Data from the stickleback experiment (Kim et al. 2018)

description: An Excel file with the experimental data. Each parameter is explained as a comment in the column title.
DOI: 10.17632/ywd26ss6v7.1
title: Data for: Comparative behaviour of different proteases on preserved egg white gel hydrolysates

description: The data is about preserved egg white gel hydrolysates, including emulsifying, rheological, FTIR, protein fraction, sulfhydryl and disulfide bond.
DOI: 10.5061/dryad.0f8n6sj/1
title: Monitoring of great tits reproductive success, body condition and infection status

description: We investigated the impact of haemosporidian parasite infections on reproduction and survival of two populations of great tits (Parus major) located in two study sites in Switzerland: Dorigny and Monod. Birds were sampled during the breeding season for 12 consecutive years (2005-2016). Nest boxes were regularly inspected from mid-March and laying date (1 April = day 1), clutch size and fledging success were recorded. Adults were marked with an individually numbered aluminium ring (Swiss Ornithological Institute, Switzerland), weighed with an electronic balance and the tarsus was measured using digital callipers (0.01 mm). Adult sex and age were determined using plumage characteristics or ringing records when available. In order to investigate avian haemosporidian infection, 30-50 μl of blood were sampled by brachial venipuncture. Parasites were detected from blood samples by nested PCR. Nested PCR products were sequenced and identified by performing a local BLAST search in the MalAvi database. Because Plasmodium and Haemoproteus gene fragments were amplified with the same primer pair, we were not able to differentiate co-infections by Plasmodium and Haemoproteus lineages from mixed infections between Plasmodium or Haemoproteus lineages.
DOI: 10.5061/dryad.0js540s/1
title: Seed set of strawberry fruits

description: Seed set of strawberry fruits adjacent to wildflower strips and control strips.
DOI: 10.5061/dryad.0js540s/2
title: Pollinator abundance in wildflower strips and at adjacent strawberry fields

description: Abundance data of the most important pollinator groups in Wildflower strips and at adjacent strawberry crop fields
DOI: 10.5061/dryad.0k90c0v/2
title: Parasites

description: Sequences and provisional ID for all parasites
DOI: 10.5061/dryad.0k90c0v/3
title: Seed 2 MatK

description: MatK sequences from seeds
DOI: 10.5061/dryad.0k90c0v/4
title: Seed 2 RbcL

description: RbcL sequences for seeds
DOI: 10.5061/dryad.0k90c0v/5
title: Seed 2 TrnH

description: TrnH sequences for seeds
DOI: 10.5061/dryad.0k90c0v/6
title: 157bp region

description: 157 region with primers clipped, dereplicated and singleton haplotypes revoved. All sequences identified to bat species.
DOI: 10.5061/dryad.0k90c0v/7
title: 407bp region

description: Sequences from 405bp region.
DOI: 10.5061/dryad.0k90c0v/8
title: SeeIDBatCOdes

description: Codes for bat ID to identify seed sequences to individual bat.
DOI: 10.5061/dryad.121b453/2
title: Data matrices analyzed for this study
DOI: 10.5061/dryad.121b453/3
title: Final trees presented and displayed in this study
DOI: 10.5061/dryad.2226v8m/1
title: Species List
DOI: 10.5061/dryad.3fc8m7c/1
title: Cedar River sockeye salmon annual phenology, abundance and environmental data 1965-2016

description: Observations of abundance, migration timing, environmental covariates of timing, and hatchery egg take data for 1965-2016. Data are observed for passage of the Ballard Locks, arrival at the Baker River and occupancy of the Cedar River. The heritability tab includes data used for estimating the heritability of spawning date for Cedar River sockeye salmon. These data are mean spawning dates of parent and offspring by release groups and years.
DOI: 10.5061/dryad.42m96c8/1
title: RData and Rscript for the wolverine example

description: WolverineData.RData is the RData file necessary to perform the analysis of the wolverine data. Script.pdf is a Rmarkdown document with the steps necessary to reproduce the analysis.
DOI: 10.5061/dryad.4ng70/1
title: ITS1 chromatograms

description: The folder contains all the chromatograms of the rotifer clones newly sequenced for this study. The folder also contains the Sequencher file of assembled sequence reads (“Sequencer_aligned_chromatograms.spf”) with *_H1 in the name of the sample indicating a single nucleotide heterozygote and “_LVH” indicating a length variant heterozygote.
DOI: 10.5061/dryad.4ng70/2
title: Alignment

description: The folder contains the LocARNA alignment result file for all the studied ITS1 sequences. The file “Haplotype_mapping.xlsx” contains the association between the haplotypes used in this study and those of Papakostas et al. (2016) Systematic Biology, 65: 508-524.
DOI: 10.5061/dryad.4ng70/3
title: jModeltest2_BIC_result

description: The file contains the BIC result of the model likelihoods calculated with jModeltest2 for the studied ITS1 alignment.
DOI: 10.5061/dryad.4ng70/4
title: BEAST run

description: This folder contains the files associated with the BEAST analysis used in the manuscript.
DOI: 10.5061/dryad.4ng70/5
title: Result of GMYC

description: This file contains the result of the GMYC species delimitation analysis on the tree selected using TreeAnnotator as described in the manuscript. Haplotype numbers are as inferred for this study (check file "Haploype mapping.xlsx" at the "Alignment" datafile of this Dryad submission for drawing a connection with the haplotypes used in Papakostas et al. (2016) Systematic Biology, 65: 508-524).
DOI: 10.5061/dryad.4ng70/6
title: Rotifer_microphotographs

description: This file contains Rotifer microphotographs analysed for the morphometric analysis of the four species described in the manuscript in addition to the '9_Rotifer microphotographs' of Papakostas et al 2016: Systematic Biology 65: 508-524
DOI: 10.5061/dryad.5kt4j51/1
title: Population abundances over time

description: Population abundances of Tetraselmis tetrahele grown over an experimental temperature gradient in constant and fluctuating thermal regimes (i.e. fluctuations of 5 degrees celcius up and down around mean temperatures) in the O'Connor Lab at the University of British Columbia.
DOI: 10.5061/dryad.794436q/4
title: FST_files

description: The compressed file titled 'FST_files' contains six Fst output files generated by STACKS (three generated for each of two analyses). Each file contains Fst data comparing two of the three groups described in the paper (i.e. 'eastern', 'pale-headed' and 'hybrid' rosella groups). This data was used by STACKS to calculate the mean Fst values in Table 2 of the paper.
DOI: 10.5061/dryad.794436q/5
title: INTROGRESS_Data_77Individuals

description: RADseq data used for analyses in the Introgress R package. This file contains data from 77 rosellas and 152 loci shown to display interspecific alele frequency differentials greater than or equal to 0.8. The file is a modification of the 'haplotypes.tsv' file generated by STACKS.
DOI: 10.5061/dryad.794436q/6
title: INTROGRESS_Data_46Individuals

description: RADseq data used for analyses in the Introgress R package. This file contains data from 46 rosellas and 128 loci shown to display interspecific alele frequency differentials greater than or equal to 0.8. The file is a modification of the 'haplotypes.tsv' file generated by STACKS.