cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16734254
title: InDIA-Inversion of Subsurface Density Interface and its Application: A Machine Learning Approach to Global Optimization using Structured Gaussian Processes and Bayesian Optimization

description: It Bayesian Inference with Gaussian Process Regression to create a flexible and accurate Python-based inversion technique (InDIA) for predicting anisotropic subsurface layer parameters, incorporating uncertainty information. Bayesian optimization has traditionally been limited to magneto-telluric, seismic, and magnetic data. This paper introduces its first application to gravity anomaly data. By utilizing structural Gaussian Processes, the algorithm effectively enhances the accuracy of predicting inversion parameters, leveraging a diverse range of prior information. Previously, gravity data inversion techniques focused on continuous depth profiles, restricting their use to local gravity anomaly issues. In contrast, the current method estimates discretized subsurface layer depths and densities, allowing it to address local and regional gravity anomalies. This paper demonstrates the effectiveness of the proposed approach in accurately estimating inverted depths and densities, closely reflecting real-world scenarios. It addresses challenges associated with multiple inversion parameters, common in local optimization techniques such as Gradient Descent followed by ADAM-based optimizations. The superiority of this algorithm has been validated through various synthetic models featuring both constant and variable density distributions—whether lateral, vertical, or both—incorporating Gaussian noise to replicate real conditions. Furthermore, the method's efficiency in tackling multi-layered subsurface problems has been confirmed by inverting actual gravity anomaly data from the West Korea Basin in the western part of the Korean Peninsula and the Godavari Basin in the eastern part of Indian Peninsula. The resulting inverted subsurface layer depths and densities are geologically viable and align closely with previously estimated results.
DOI: 10.5281/zenodo.16734255
title: InDIA-Inversion of Subsurface Density Interface and its Application: A Machine Learning Approach to Global Optimization using Structured Gaussian Processes and Bayesian Optimization

description: It Bayesian Inference with Gaussian Process Regression to create a flexible and accurate Python-based inversion technique (InDIA) for predicting anisotropic subsurface layer parameters, incorporating uncertainty information. Bayesian optimization has traditionally been limited to magneto-telluric, seismic, and magnetic data. This paper introduces its first application to gravity anomaly data. By utilizing structural Gaussian Processes, the algorithm effectively enhances the accuracy of predicting inversion parameters, leveraging a diverse range of prior information. Previously, gravity data inversion techniques focused on continuous depth profiles, restricting their use to local gravity anomaly issues. In contrast, the current method estimates discretized subsurface layer depths and densities, allowing it to address local and regional gravity anomalies. This paper demonstrates the effectiveness of the proposed approach in accurately estimating inverted depths and densities, closely reflecting real-world scenarios. It addresses challenges associated with multiple inversion parameters, common in local optimization techniques such as Gradient Descent followed by ADAM-based optimizations. The superiority of this algorithm has been validated through various synthetic models featuring both constant and variable density distributions—whether lateral, vertical, or both—incorporating Gaussian noise to replicate real conditions. Furthermore, the method's efficiency in tackling multi-layered subsurface problems has been confirmed by inverting actual gravity anomaly data from the West Korea Basin in the western part of the Korean Peninsula and the Godavari Basin in the eastern part of Indian Peninsula. The resulting inverted subsurface layer depths and densities are geologically viable and align closely with previously estimated results.
DOI: 10.15468/dl.8rc639
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (USA.7_1, USA.22_1, USA.20_1, USA.30_1, USA.33_1, USA.40_1, USA.46_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Dufourea monardae"
 ]
}

 The dataset includes 25 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013402-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ah365
title: Occurrence Download

description: A dataset containing 531 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sebastiania pavoniana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 531 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013401-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9dc9fy
title: Occurrence Download

description: A dataset containing 19600 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Datos de ocurrencia de triatominos americanos del Laboratorio de Triatominos del CEPAVE (CONICET-UNLP)"
 ]
}

 The dataset includes 19600 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013407-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.asj4u7
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Veronica spicata",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 137 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013406-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bsxvj3
title: Occurrence Download

description: A dataset containing 322 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Veronica spicata",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 322 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013409-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9nvu8h
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jatropha pereziae",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013410-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wt3qqc
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Veronica spicata",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013408-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/w1lvck
title: Replication Data for: Policy Proximity and Candidate Repositioning: The Value of Consistency

description: Instructions, code, data, and results.
DOI: 10.15468/dl.wtqxhw
title: Occurrence Download

description: A dataset containing 12344 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Veronica spicata",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12344 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013411-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.994fuj
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jatropha heynei",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013413-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hdj3dg
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Veronica spicata",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 70 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013412-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17196058
title: POPC_sage2.2.0_rc3

description: openFF 2.2.0 ff with nagl rc3 charges.

Short simulation for prelim data
DOI: 10.15468/dl.4mavpe
title: Occurrence Download

description: A dataset listing the 16 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Biodiversidad en Ecosistemas Estratégicos Más Bosques - Mariposas"
 ]
}

 The dataset's 16 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013394-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bemezd
title: Occurrence Download

description: A dataset containing 596212 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Rumex crispus)"
 ]
}

 The dataset includes 596212 records from 3424 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013382-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.js7wjq
title: Occurrence Download

description: A dataset containing 86659 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is UCT: Southern African Butterfly Conservation Assessment (1815-2009)"
 ]
}

 The dataset includes 86659 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007770-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aeu4k9
title: Occurrence Download

description: A dataset containing 529479 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gyps fulvus (Hablizl, 1783)"
 ]
}

 The dataset includes 529479 records from 760 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007767-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/sykbfq
title: Reappraisal and new material of the holotype of Draconyx loureiroi (Ornithischia: Iguanodontia) provide insights on the tempo and modo of evolution of thumb-spiked dinosaurs

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rotatori, Filippo Maria, Moreno-Azanza, Miguel, Mateus, Octávio (2022): Reappraisal and new material of the holotype of Draconyx loureiroi (Ornithischia: Iguanodontia) provide insights on the tempo and modo of evolution of thumb-spiked dinosaurs. Zoological Journal of the Linnean Society 195 (1): 125-156, DOI: 10.1093/zoolinnean/zlab113, URL: https://academic.oup.com/zoolinnean/article/195/1/125/6535466
DOI: 10.15468/cnrtmk
title: Sherbetra nom. n. (gen.) pro Trisulcus Popofsky 1913 non Hitchcock 1865 (Amphiactinaria nom. clad. n., Polycystina, Rhizaria), with six new combinations

description: This dataset contains the digitized treatments in Plazi based on the original journal article Shɨshkin-Skarð, Yegor (2024): Sherbetra nom. n. (gen.) pro Trisulcus Popofsky 1913 non Hitchcock 1865 (Amphiactinaria nom. clad. n., Polycystina, Rhizaria), with six new combinations. Zootaxa 5474 (4): 441-444, DOI: 10.11646/zootaxa.5474.4.6, URL: http://dx.doi.org/10.11646/zootaxa.5474.4.6
DOI: 10.15468/vedgd7
title: New species of Neomachilellus Wygodzinsky 1953 (Insecta: Archaeognatha: Meinertellidae) from Madre de Dios, Peru

description: This dataset contains the digitized treatments in Plazi based on the original journal article Palacios-Martinez, Iñigo (2024): New species of Neomachilellus Wygodzinsky 1953 (Insecta: Archaeognatha: Meinertellidae) from Madre de Dios, Peru. Zootaxa 5448 (3): 417-429, DOI: 10.11646/zootaxa.5448.3.5, URL: http://dx.doi.org/10.11646/zootaxa.5360.3.8AbstractThis study describes a new species of jumping bristletail, Neomachilellus mercurialis sp. nov., discovered during a research expedition at the Los Amigos Biological Station in Madre de Dios, Peru. The specimens could not be morphologically assigned to any known species within the genus Neomachilellus s. str. Wygodzinsky 1953. Morphological examination revealed distinct differences in various characters, morphometric measurements, and pigmentation patterns compared to other species. The new species exhibits submedian, widened, oval-shaped ocelli, pigmentation on articles I‒VII of the maxillary palpi, and strong pigment on the femora, tibiae, and tarsi of the legs. Notably, femora and tibiae lack spines or prominent spiniform setae, while the tarsi feature spine-like setae characteristic of the nominal subgenus. The newly discovered species shares a close relationship with other taxa of Neomachilellus, specifically belonging to the muticusgroup of species. Urgent taxonomic revision and molecular studies are warranted for this genus, emphasizing the ongoing challenges in understanding Archaeognatha.
DOI: 10.15468/7vcy9j
title: Saitis lusitanicus Simon, 1901 is a junior synonymn of ' Euophrys' difficilis (Simon, 1868) (Araneae: Salticidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Logunov, Dmitri V. (2005): Saitis lusitanicus Simon, 1901 is a junior synonymn of ' Euophrys' difficilis (Simon, 1868) (Araneae: Salticidae). Newsletter of the British Arachnological Society 102: 14-15
DOI: 10.15468/d95vsz
title: The true identity of Tectaria nesiotica Holttum (Tectariaceae), with comments on the species identification in Pleocnemia (Dryopteridaceae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article ZHAO, HUI-GUO, Dong, Shi-Yong (2015): The true identity of Tectaria nesiotica Holttum (Tectariaceae), with comments on the species identification in Pleocnemia (Dryopteridaceae). Phytotaxa 202 (1): 45-50, DOI: 10.11646/phytotaxa.202.1.5, URL: http://dx.doi.org/10.11646/phytotaxa.202.1.5AbstractThe species Tectaria nesiotica Holttum, described from New Guinea, is confirmed to be a member of the genus Pleocnemia and thus a new combination, P. nesiotica, is proposed here. It superficially resembles some species of Tectaria with large, finely dissected fronds and with veins anastomosing only along costae but differs in venation pattern. Within Pleocnemia, P. nesiotica is readily distinguished from other species by the blackish rachis and the sori confined to the apex of pinnule lobes. We fail to provide a key to all known species of Pleocnemia from New Guinea because for this group the species concept is currently very confusing, which was probably resulted from the incomplete herbarium specimens and the overemphasis of the character, sori indusiate or not, in recognizing species. Field observations are called for the clarification of species boundary in Pleocnemia.
DOI: 10.15468/ur7xqk
title: Rediscovery of Diospyros bambuseti (Ebenaceae) in Thailand: Emended taxonomic description, lectotypification, and phylogenetic placement

description: This dataset contains the digitized treatments in Plazi based on the original journal article Duangjai, Sutee, Sinbumroong, Aroon, Chalermwong, Porntawat, Suekaew, Padungsak, Suddee, Somran (2022): Rediscovery of Diospyros bambuseti (Ebenaceae) in Thailand: Emended taxonomic description, lectotypification, and phylogenetic placement. Phytotaxa 542 (3): 271-282, DOI: 10.11646/phytotaxa.542.3.3, URL: http://dx.doi.org/10.11646/phytotaxa.542.3.3AbstractDiospyros bambuseti is a rare species endemic to Thailand that was previously known only from type specimens. The only male specimens of this species were collected in 1930 from a bamboo forest in Aranya Prathet district, now Sa Kaeo Province, Thailand. Both male and female plants were rediscovered in Surat Thani Province, upper Peninsular Thailand during 2015–2020. In this work, we provide an emended description, detailed ecological data, photographs, and illustrations of recently collected specimens. We performed lectotypification and investigated the phylogenetic placement and sister taxa of D. bambuseti based on the DNA sequences of eight plastid regions. D. bambuseti is closely related to D. ehretioides, D. fasiculosa, and D. venosa. Finally, we provide a detailed morphological comparison of D. bambuseti with related species.
DOI: 10.15468/uwkgee
title: A new stem-tetrapod fish from the Middle-Late Devonian of central AustraliaCitation for this article: Choo, B., Holland, T., Clement, A. M., King, B., Challands, T., Young, G., & amp; Long, J. A. (2024) A new stem-tetrapod fish from the Middle-Late Devonian of central Australia. Journal of Vertebrate Paleontology. https: // doi. org / 10.1080 / 02724634.2023.2285000

description: This dataset contains the digitized treatments in Plazi based on the original journal article Choo, Brian, Holland, Timothy, Clement, Alice M., King, Benedict, Challands, Tom, Young, Gavin, Long, John A. (2024): A new stem-tetrapod fish from the Middle-Late Devonian of central AustraliaCitation for this article: Choo, B., Holland, T., Clement, A. M., King, B., Challands, T., Young, G., & amp; Long, J. A. (2024) A new stem-tetrapod fish from the Middle-Late Devonian of central Australia. Journal of Vertebrate Paleontology. https: // doi. org / 10.1080 / 02724634.2023.2285000. Journal of Vertebrate Paleontology (e 2285000) 43 (3): 1-15, DOI: 10.1080/02724634.2023.2285000, URL: http://dx.doi.org/10.1080/02724634.2023.2285000
DOI: 10.15468/jmc7qm
title: Gomphonema shanghaiensis sp. nov., a new diatom species (Bacillariophyta) from a river in Shanghai, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zhang, Wei, Xu, Xiao-Ying, Kociolek, J. Patrick, Wang, Li-Qing (2016): Gomphonema shanghaiensis sp. nov., a new diatom species (Bacillariophyta) from a river in Shanghai, China. Phytotaxa 278 (1): 29-38, DOI: 10.11646/phytotaxa.278.1.3, URL: http://dx.doi.org/10.11646/phytotaxa.278.1.3AbstractThis paper describes the new species Gomphonema shanghaiensis sp. nov. from Shujiawan River, Shanghai City, in the lower reaches of Yangtze River, China. The description is based on data derived from light and scanning electron microscopy. Valves of Gomphonema shanghaiensis are narrowly lanceolate to rhombic-lanceolate, slightly asymmetrical to the apical axis, with a gibbous central region. The footpole is broadly rounded and the headpole is slightly rostrate to narrowly rounded. The axial area is narrow and linear. Central area is small, and irregularly rectangular in shape. 1–5 rounded external stigmal openings are evident, and internally 1–2 of these are positioned on the central nodule. Striae are slightly radiate at the center, radiate towards the poles. The new species was compared with G. hasta, G. archaevibrio, G. spiculoides, G. stagnorum, G. guaraniarum, G. tumens and G. disgracile, all of which resemble Gomphonema shanghaiensis but differ from the new species in specific details of size, striae density, valve shape and stigmal openings number. This species occurs in relatively clean water in Shanghai.
DOI: 10.15468/3xgt55
title: Redescription of Bathymodiolus septemdierum Hashimoto and Okutani, 1994 (Bivalvia, Mytilida, Mytilidae), a mussel broadly distributed across hydrothermal vent locations in the western Pacific and Indian Oceans

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tunnicliffe, Verena, Breusing, Corinna (2022): Redescription of Bathymodiolus septemdierum Hashimoto and Okutani, 1994 (Bivalvia, Mytilida, Mytilidae), a mussel broadly distributed across hydrothermal vent locations in the western Pacific and Indian Oceans. Zootaxa 5214 (3): 337-364, DOI: 10.11646/zootaxa.5214.3.2AbstractMussels of the genus Bathymodiolus Kenk & Wilson belong to the foundation fauna at hydrothermal vents in the global deep sea. In the western Pacific and Indian oceans, the three nominal taxa B. septemdierum Hashimoto and Okutani, B. brevior Cosel, Métivier & Okutani and B. marisindicus Hashimoto are currently recognized as separate species despite morphological and genetic evidence for their conspecificity. All three are listed with the International Union for Conservation of Nature Red List based on highly restricted ranges. We compile and supplement existing morphometric and molecular data to revise the Bathymodiolus septemdierum species group. We redescribe B. septemdierum as a single species with B. brevior and B. marisindicus recognized as junior synonyms. Given the exceptionally broad range of B. septemdierum, we propose removal of these three taxa from the IUCN Red List.