cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.2063781.v1
title: Disambiguating the Stream/Bounce Illusion With Inference

description: The ‘stream/bounce’ illusion refers to the perception of an ambiguous visual display in which two discs approach each other on a collision course. The display can be seen as two discs streaming through each other or bouncing off each other. Which perception dominates, may be influenced by a brief transient, usually a sound, presented around the time of simulated contact. Several theories have been proposed to account for the switching in dominance based on sensory processing, attention and cognitive inference, but a universally applicable, parsimonious explanation has not emerged. We hypothesized that only cognitive inference would be influenced by the perceptual history of the display. We rendered the display technically unambiguous by vertically offsetting the targets’ trajectories and manipulated their history by allowing the objects to switch from one trajectory to the other up to four times before the potential collision point. As the number of switches increased, the number of ‘bounce’ responses also increased. These observations show that expectancy is a critical factor in determining whether a bounce or streaming is perceived and may form the basis for a universal explanation of instances of the stream/bounce illusion.
DOI: 10.6084/m9.figshare.2063730
title: outcomesfromcontentanalysesandinterpration.pdf

description: outcomes from content analyses of two internat'l journals and interpretation of patterns (improved version)<br><br>this complements a subsection in Hinskens, F., in Ch. Boberg, J. Nerbonne & D. Watt (eds), Handbook of Dialectology - to appear 2016 (Wiley Blackwell)
DOI: 10.6084/m9.figshare.2063766
title: anguinomycin_C.jdx

description: 1H NMR Spectrum of Synthetic Anguinomycin C. Published in Bonazzi et al., <i>Angew. Chem. Int. Ed.</i> <b>2007</b>, <i>46</i>, 8707 –8710. DOI: 10.1002/anie.200703134.<br><br>See also: Bonazzi et al., J. Am. Chem. Soc., 2010, 132 (4), pp 1432–1442<strong>DOI: </strong>10.1021/ja9097093
DOI: 10.6084/m9.figshare.2063727
title: Paired sample annotations

description: All bacterial annotations and sequences from meningene study<br>To comply with 1Gb per file limit, S. pneumoniae annotations are split. Use:cat xaa xab &gt; strep_pneumo_annotations.tar.bz2
DOI: 10.6084/m9.figshare.2063730.v1
title: outcomesfromcontentanalysesandinterpration.pdf

description: outcomes from content analyses of two internat'l journals and interpretation of patterns (improved version)<br><br>this complements a subsection in Hinskens, F., in Ch. Boberg, J. Nerbonne & D. Watt (eds), Handbook of Dialectology - to appear 2016 (Wiley Blackwell)
DOI: 10.6084/m9.figshare.2063766.v2
title: anguinomycin_C.jdx

description: 1H NMR Spectrum of Synthetic Anguinomycin C. Published in Bonazzi et al., <i>Angew. Chem. Int. Ed.</i> <b>2007</b>, <i>46</i>, 8707 –8710. DOI: 10.1002/anie.200703134.<br><br>See also: Bonazzi et al., J. Am. Chem. Soc., 2010, 132 (4), pp 1432–1442<strong>DOI: </strong>10.1021/ja9097093
DOI: 10.6084/m9.figshare.2063766.v1
title: anguinomycin_C.jdx

description: 1H NMR Spectrum of Synthetic Anguinomycin C. Published in Bonazzi et al., <i>Angew. Chem. Int. Ed.</i> <b>2007</b>, <i>46</i>, 8707 –8710. DOI: 10.1002/anie.200703134.<br><br>See also: Bonazzi et al., J. Am. Chem. Soc., 2010, 132 (4), pp 1432–1442<strong>DOI: </strong>10.1021/ja9097093
DOI: 10.6084/m9.figshare.2063589
title: Peritoneal cell proportions

description: FACS data, <i>Rattus norvegicus </i>
DOI: 10.6084/m9.figshare.2063586
title: Dendrocerus mexicali images and semantic statements

description: Figures and OWL files for Burks et al 2016. Dendrocerus mexicali (Hymenoptera, Ceraphronoidea, Megaspilidae): Novel antennal morphology, first description of female, and expansion of known range into the U.S.<br>
DOI: 10.6084/m9.figshare.2063589.v1
title: Peritoneal cell proportions

description: FACS data, <i>Rattus norvegicus </i>
DOI: 10.6084/m9.figshare.2063529
title: JSON test data for tweet2r package (R)

description: JSON files to test code described in the article "Tweet2r a package to capture from streaming, storing and describing large tweets data sets as spatio-temporal data"<br>
DOI: 10.6084/m9.figshare.2063574
title: Injection_Well_Database_Data.zip

description: A database of EPA Underground Injection Control Class II injection wells in the Central and Eastern United States. The database contains injection data on more than 187,000 injection wells associated with oil and gas production in the Central and Eastern United States. This includes waste disposal injection wells and injection wells associated with enhanced oil recovery. We compiled this database to analyze the relationship between injection wells and earthquakes in the Central and Eastern United States. See readme file in *.zip folder for more details on the database.<br>This database is associated with analysis published here:<br>Weingarten, M., Ge, S., Godt, J.W., Bekins, B.A. and J. L. Rubinstein (2015), High-rate injection is associated with the increase in U.S. mid-continent seismicity, Science, 348 (6241), pg. 1336-1340, doi:10.1126/science.1255802<br>Please cite this reference if you use database in your work.<br><br>
DOI: 10.6084/m9.figshare.2063574.v1
title: Injection_Well_Database_Data.zip

description: A database of EPA Underground Injection Control Class II injection wells in the Central and Eastern United States. The database contains injection data on more than 187,000 injection wells associated with oil and gas production in the Central and Eastern United States. This includes waste disposal injection wells and injection wells associated with enhanced oil recovery. We compiled this database to analyze the relationship between injection wells and earthquakes in the Central and Eastern United States. See readme file in *.zip folder for more details on the database.<br>This database is associated with analysis published here:<br>Weingarten, M., Ge, S., Godt, J.W., Bekins, B.A. and J. L. Rubinstein (2015), High-rate injection is associated with the increase in U.S. mid-continent seismicity, Science, 348 (6241), pg. 1336-1340, doi:10.1126/science.1255802<br>Please cite this reference if you use database in your work.<br><br>
DOI: 10.6084/m9.figshare.2063475
title: PLoSONE_Jan2016_data

description: Processed physiological recordings for Retinal Ganglion cells<br>
DOI: 10.6084/m9.figshare.2063586.v1
title: Dendrocerus mexicali images and semantic statements

description: Figures and OWL files for Burks et al 2016. Dendrocerus mexicali (Hymenoptera, Ceraphronoidea, Megaspilidae): Novel antennal morphology, first description of female, and expansion of known range into the U.S.<br>
DOI: 10.6084/m9.figshare.2063475.v1
title: PLoSONE_Jan2016_data

description: Processed physiological recordings for Retinal Ganglion cells<br>
DOI: 10.6084/m9.figshare.2063529.v1
title: json test data

description: JSON files to test code described in the article "Tweet2r a package to capture from streaming, storing and describing large tweets data sets as spatio-temporal data"<br>
DOI: 10.6084/m9.figshare.2063442
title: ANGSD-wrapper example sequence data: 22 Maize and Teosinte Inbred Lines.

description: This is the example data set for ANGSD-wrapper. It contains bam files for 11 maize and 11 teosinte inbred lines as well as a reference sequence and out group (Tripsacum)
DOI: 10.6084/m9.figshare.2063424
title: MCMC Samples

description: MCMC samples from Czekala et al. 2016, "A Disk-based Dynamical Constraint on the Mass of the Young Binary DQ Tau."
DOI: 10.6084/m9.figshare.2063529.v2
title: json test data

description: JSON files to test code described in the article "Tweet2r a package to capture from streaming, storing and describing large tweets data sets as spatio-temporal data"<br>
DOI: 10.6084/m9.figshare.2063442.v1
title: Example_Data.tar.bz2

description: This is the example data set for ANGSD-wrapper
DOI: 10.6084/m9.figshare.2063529.v3
title: json test data

description: JSON files to test code described in the article "Tweet2r a package to capture from streaming, storing and describing large tweets data sets as spatio-temporal data"<br>
DOI: 10.6084/m9.figshare.2063442.v3
title: ANGSD-wrapper example sequence data: 22 Maize and Teosinte Inbred Lines.

description: This is the example data set for ANGSD-wrapper. It contains bam files for 11 maize and 11 teosinte inbred lines as well as a reference sequence and out group (Tripsacum)
DOI: 10.6084/m9.figshare.2063442.v2
title: ANGSD-wrapper example sequence data

description: This is the example data set for ANGSD-wrapper
DOI: 10.6084/m9.figshare.2063529.v5
title: JSON test data for tweet2r package (R)

description: JSON files to test code described in the article "Tweet2r a package to capture from streaming, storing and describing large tweets data sets as spatio-temporal data"<br>
DOI: 10.6084/m9.figshare.2063529.v4
title: json test data

description: JSON files to test code described in the article "Tweet2r a package to capture from streaming, storing and describing large tweets data sets as spatio-temporal data"<br>
DOI: 10.6084/m9.figshare.2063313
title: Sermeq Kujalleq Area 2015 Landsat 8 Lake Depths

description: This dataset contains information on supraglacial lake depths calculated from Landsat 8 imagery using an average of single-band retrievals (following Philpot et al., Sneed & Hamilton, Tedesco & Steiner, etc.), Bands 4 (red) and 8 (panchromatic).Image list comes from dataset link below. Results to be published in Pope et al. 2016 (The Cryosphere). Methods to be published in Pope et al. 2016 (Earth and Space Science). <br>
DOI: 10.6084/m9.figshare.2063352
title: Alcelaphine Character Matrix

description: Alcelaphine osteology character matrix
DOI: 10.6084/m9.figshare.2063340
title: Strong relationships in acid base

description: getall.r is an R scriptfile designed to run on inputframe
DOI: 10.6084/m9.figshare.2063352.v1
title: Alcelaphine Character Matrix

description: Alcelaphine osteology character matrix
DOI: 10.6084/m9.figshare.2063340.v1
title: Strong relationships in acid base

description: getall.r is an R scriptfile designed to run on inputframe
DOI: 10.6084/m9.figshare.2063280
title: Guam Sponge Microbial OTU abundance & Taxonomy (Greengenes)

description: 16S rRNA gene OTU (97%) Greengenes classification and abundance table of sponge associated microbial communities from Guam (USA) - 2247 OTUs
DOI: 10.6084/m9.figshare.2063313.v1
title: Sermeq Kujalleq Area 2015 Landsat 8 Lake Depths

description: This dataset contains information on supraglacial lake depths calculated from Landsat 8 imagery using an average of single-band retrievals (following Philpot et al., Sneed & Hamilton, Tedesco & Steiner, etc.), Bands 4 (red) and 8 (panchromatic).Image list comes from dataset link below. Results to be published in Pope et al. 2016 (The Cryosphere). Methods to be published in Pope et al. 2016 (Earth and Space Science). <br>
DOI: 10.6084/m9.figshare.2063265
title: ARRIVE Checklist

description: ARRIVE Checklist
DOI: 10.6084/m9.figshare.2063217
title: Sponge-associated Microbiota

description: OTU abundance table of sponge-associated microbial communities
DOI: 10.6084/m9.figshare.2063280.v1
title: Guam Sponge Microbial OTU abundance & Taxonomy (Greengenes)

description: 16S rRNA gene OTU (97%) Greengenes classification and abundance table of sponge associated microbial communities from Guam (USA) - 2247 OTUs
DOI: 10.6084/m9.figshare.2063082
title: Structure of human splicing factor 3b (SF3b): theoretical model

description: Structural model of human splicing factor 3b (SF3b) as of January 13th 2016.<br><br>The model was generated using PyRy3D software in October 2015.<br>
DOI: 10.6084/m9.figshare.2063184
title: S1 File

description: Amplification of 16S rDNA was carried out by polymerase chain reaction (PCR) using a thermal cycler (Mycycler, BioRad). The PCR was carried out with approximately 100 ng of pure genomic DNA. The forward primer PA (AGA GTT TGA TCC TGG CTC AG) and the reverse primer PH (AAG GAG GTG ATC CAG CCG CA), were used for amplification of nearly entire gene. The amplification reactions were performed in a 50 μl volume, by mixing 2 µl of template DNA with 2 μl of each primer, 0.66 μl of (3u/µl) <i>Taq</i> polymerase (Genei, India), 1 μl dNTPs (10 μM each dATP, dCTP, dTTP and dGTP) (Genei, India), PCR buffer (10X) 5 μl and 37.34 μl MQ water for each reaction mixture. PCR amplified DNA was purified by HiYield PCR DNA mini kit from Real Biotech Corporation (RBC, India) through gel excision method. Purified DNA was sequenced by Amnion Biosciences Pvt. Ltd, India.
DOI: 10.6084/m9.figshare.2063217.v1
title: guam.sponges.OTU.csv

description: OTU abundance table of sponge associated microbial communities from Guam (USA)
DOI: 10.15468/f544fe
title: First description of neonate Batagur trivittata (Testudines: Geoemydidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Platt, Steven G., Lwin, Tint, Win, Myo Min, Platt, Kalyar, Haislip, Nathan A., Dijk, Peter Paul Van, Rainwater, Thomas R. (2020): First description of neonate Batagur trivittata (Testudines: Geoemydidae). Zootaxa 4821 (2): 394-400, DOI: https://doi.org/10.11646/zootaxa.4821.2.10
DOI: 10.6084/m9.figshare.2063217.v3
title: Sponge-associated Microbiota

description: OTU abundance table of sponge-associated microbial communities
DOI: 10.6084/m9.figshare.12916022.v1
title: R0193_20171010a_videos

description: Rat 0193, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.2063217.v2
title: Guam Sponge Microbiota

description: OTU abundance table of sponge associated microbial communities from Guam (USA)
DOI: 10.6084/m9.figshare.2063082.v1
title: Structure of human splicing factor 3b (SF3b): theoretical model

description: Structural model of human splicing factor 3b (SF3b) as for January 13th 2016.<br><br>The model was generated using PyRy3D software.<br>
DOI: 10.6084/m9.figshare.2063082.v2
title: Structure of human splicing factor 3b (SF3b): theoretical model

description: Structural model of human splicing factor 3b (SF3b) as of January 13th 2016.<br><br>The model was generated using PyRy3D software in October 2015.<br>
DOI: 10.6084/m9.figshare.2062863
title: The Network Architecture of Embryonic Developmental Regulation

description: Presentation, follow-up to Network Frontiers 2015 Abstract.
DOI: 10.6084/m9.figshare.2062878
title: SeFo-0.0.0

description: GNU Octave package for probabilistic seasonal forecasting
DOI: 10.6084/m9.figshare.2062833
title: 2016-01 KCNT2 Anesthesiology Data Set.xls

description: Original data set for the paper entitled "Cardiac Slo2.1 is required for volatile anesthetic stimulation of K+ transport and anesthetic preconditioning", published January 2016 in the journal <i>Anesthesiology</i>.<br>
DOI: 10.6084/m9.figshare.2062878.v1
title: SeFo-0.0.0

description: GNU Octave package for probabilistic seasonal forecasting
DOI: 10.6084/m9.figshare.2062785
title: “Feedback useful in VA testing” – dataset and R scripts for the paper

description: Effects of feedback on acuity outcome measures and participants' comfort
DOI: 10.6084/m9.figshare.2062833.v2
title: 2016-01 KCNT2 Anesthesiology Data Set.xls

description: Original data set for the paper entitled "Cardiac Slo2.1 is required for volatile anesthetic stimulation of K+ transport and anesthetic preconditioning", published January 2016 in the journal <i>Anesthesiology</i>.<br>
DOI: 10.6084/m9.figshare.2062749
title: An in-store experiment on the effect of accessibility on sales of whole grain and white bread in supermarkets.

description: The effect of convenience on bread sales was investigated over two periods in two supermarkets. During period 1 (week 43-49, 2013) whole grain bread was presented conveniently near the entrance whereas white bread was located further away (healthy first) in one of the supermarkets whereas white bread was located near the entrance in the other supermarket (healthy last). During period 2 (week 5-9, 2014) this order was reversed. The number of units of five categories of bread, including whole grain and white bread, was registered per day.
DOI: 10.6084/m9.figshare.2062863.v2
title: The Network Architecture of Embryonic Developmental Regulation

description: Presentation, follow-up to Network Frontiers 2015 Abstract.
DOI: 10.6084/m9.figshare.2062833.v1
title: 2016-01 KCNT2 Anesthesiology Data Set.xls

description: Original data set for the paper entitled "Cardiac Slo2.1 is required for volatile anesthetic stimulation of K+ transport and anesthetic preconditioning", published January 2016 in the journal <i>Anesthesiology</i>.<br>
DOI: 10.6084/m9.figshare.2062863.v3
title: The Network Architecture of Embryonic Developmental Regulation

description: Presentation, follow-up to Network Frontiers 2015 Abstract.
DOI: 10.6084/m9.figshare.2062737
title: Sermeq Kujalleq 2015 Landsat 8 Scenes

description: Landsat 8 scenes used to measure supraglacial lake depth during 2015 over the Sermeq Kujalleq region of Greenland.<br>Results to be published in "Pope (2016) Reproducibly Estimating and Evaluating Supraglacial Lake Depth With Landsat 8 and Other Multispectral Sensors. Earth and Space Science."
DOI: 10.6084/m9.figshare.2062656
title: Transcriptome raw reads At. ferrivorans on Tetrathionate

description: Transcriptome illumina sequencing reads of At. ferrivorans grown on Tetrathionate.<br>
DOI: 10.6084/m9.figshare.2062785.v2
title: Fig 1 Acuity histogram.pdf

description: Effects of feedback on acuity outcome measures and participants' comfort
DOI: 10.6084/m9.figshare.2062650
title: Acceleration data reveal highly individually structured energetic landscapes in free-ranging fishers (Pekania pennanti)

description: <pre><b>S1 Dataset. Raw GPS and acceleration data use in the analysis. </b>Time stamps are in UTC. GPS longitude and latitude “NA” values correspond to missed fixes.</pre>
DOI: 10.6084/m9.figshare.2062698.v1
title: Processing of images of suspended particles in Matlab

description: Code and examples to process images for particle characterization. The code functionality is described in a manuscript currently submitted to Journal of Open Research Software.
DOI: 10.6084/m9.figshare.2062785.v3
title: Data set and R analysis routines for the paper “Feedback useful in VA testing”

description: Effects of feedback on acuity outcome measures and participants' comfort
DOI: 10.6084/m9.figshare.2062785.v4
title: Data set and R analysis routines for the paper “Feedback useful in VA testing”

description: Effects of feedback on acuity outcome measures and participants' comfort
DOI: 10.6084/m9.figshare.2062602
title: Catalog of Fatgraphs in the Penner-Kontsevich cellularization of the Space of smooth punctured Riemann Surfaces

description: Catalog of fatgraphs occurring in the Penner-Kontsevich cellularization of the Space $M_{g,n}$ of smooth punctured Riemann Surfaces. <br><br>Details and the algorithms used to generate the data here have been described in: http://arxiv.org/abs/1202.1820<br><br>The generator code is currently hosted at: https://github.com/riccardomurri/fatghol<br>
DOI: 10.6084/m9.figshare.2062698.v3
title: Processing of images of suspended particles in Matlab

description: Code and examples to process images for particle characterization. The code functionality is described in a manuscript currently submitted to Journal of Open Research Software.<br>UPDATE Feb. 15, 2016: The ParChar code has been updated so it now also searches for other image files than jpeg. The ParChar_run code had a few flaws that has been updated (e.g. it was saving to an incorrect location and looking for the wrong ParChar code).
DOI: 10.6084/m9.figshare.2062785.v5
title: “Feedback useful in VA testing” – sataset and R scripts for the paper

description: Effects of feedback on acuity outcome measures and participants' comfort
DOI: 10.6084/m9.figshare.2062566
title: eBeam Vaccine Data for PLoS One.xlsx

description: Serial data from randomized, controlled trial of electron beam inactivated R. equi to prevent pneumonia in foals
DOI: 10.6084/m9.figshare.2062581
title: example_data

description: We provide five example data for testing with associated gold standard data generated by human annotators. <b>Example data (dataset name/species/data contributor/ country)</b> 1. Chick_uw / chick / University of Washington / USA 2. fruitfly_larvae_gmu / fruitfly_larvae / George Mason University / USA 3. human_allen_confocal / human / Allen Institute for Brain Science / USA 4. Taiwan_flycirciut / drosophila / FlyCircuit.org / Taiwan 5. zebrafish_larve / zebrafish / University of Washington / USA <br> For each example, three files are provided. 1. Raw image data - filename.v3dpbd 2. Gold standard data - filename.swc 3. Dummy file - filename.ano
DOI: 10.6084/m9.figshare.2062602.v1
title: Catalog of Fatgraphs in the Penner-Kontsevich cellularization of the Space of smooth punctured Riemann Surfaces

description: Catalog of fatgraphs occurring in the Penner-Kontsevich cellularization of the Space $M_{g,n}$ of smooth punctured Riemann Surfaces. <br><br>Details and the algorithms used to generate the data here have been described in: http://arxiv.org/abs/1202.1820<br><br>The generator code is currently hosted at: https://github.com/riccardomurri/fatghol<br>
DOI: 10.6084/m9.figshare.2062785.v7
title: “Feedback useful in VA testing” – dataset and R scripts for the paper

description: Effects of feedback on acuity outcome measures and participants' comfort
DOI: 10.6084/m9.figshare.2062566.v1
title: eBeam Vaccine Data for PLoS One.xlsx

description: Serial data from randomized, controlled trial of electron beam inactivated R. equi to prevent pneumonia in foals
DOI: 10.6084/m9.figshare.2062575
title: Rhodococcus equi eBeam Vaccine ELISA Data

description: Serum ELISA data from foals vaccinated with electron beamed Rhodococcus equi or controls (IgGa, IgGb, IgG(T), and IgA isotypes) and nasal IgA.
DOI: 10.6084/m9.figshare.2062575.v1
title: Rhodococcus equi eBeam Vaccine ELISA Data

description: Serum ELISA data from foals vaccinated with electron beamed Rhodococcus equi or controls (IgGa, IgGb, IgG(T), and IgA isotypes) and nasal IgA.
DOI: 10.6084/m9.figshare.2062581.v1
title: example_data

description: We provide five example data for testing with associated gold standard data generated by human annotators. <b>Example data (dataset name/species/data contributor/ country)</b> 1. Chick_uw / chick / University of Washington / USA 2. fruitfly_larvae_gmu / fruitfly_larvae / George Mason University / USA 3. human_allen_confocal / human / Allen Institute for Brain Science / USA 4. Taiwan_flycirciut / drosophila / FlyCircuit.org / Taiwan 5. zebrafish_larve / zebrafish / University of Washington / USA <br> For each example, three files are provided. 1. Raw image data - filename.v3dpbd 2. Gold standard data - filename.swc 3. Dummy file - filename.ano
DOI: 10.6084/m9.figshare.2062554
title: Mark2Curator annotation submissions for NCBI disease corpus

description: An export of annotations submitted via Mark2Cure a citizen science project aimed at empowering the public to help facilitate biomedical research. This data set contains citizen scientist submitted annotations of the NCBI disease corpus in BioC xml format<br>
DOI: 10.6084/m9.figshare.2062785.v6
title: “Feedback useful in VA testing” – dataset and R scripts for the paper

description: Effects of feedback on acuity outcome measures and participants' comfort
DOI: 10.6084/m9.figshare.2062524
title: Health facility factors and quality of PMTCT services.dta

description: These data were collected from n=60 health facilities in Kenya, Mozambique, and Côte d'Ivoire (20 per country) during in-person visits between May 2013 and January 2014. Whenever possible, data were obtained directly from the facility registry. Facility staff (facility director, director of Maternal & Child Health (MCH) services, and/or director of PMTCT services, as appropriate) were interviewed to obtain any data that was not or could not be documented in the registry.