cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jsqqrm
title: Occurrence Download

description: A dataset containing 291 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Kobresia pygmaea (C.B.Clarke) C.B.Clarke",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 291 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012567-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wft99w
title: Occurrence Download

description: A dataset containing 12761 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ornithogalum nutans L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 12761 records from 194 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012570-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjrwsr
title: Occurrence Download

description: A dataset containing 16476 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Koeleria macrantha (Ledeb.) Schult.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 16476 records from 204 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012571-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kcra9f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina euchus Cohen, 1961",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-8.8018 33.6743,-9.0352 33.4562,-9.0352 28.8496,-0.0352 28.8496,-0.0352 36.4794,-0.2209 36.3968,-1.3537 36.1876,-1.6551 35.769,-2.0234 35.5842,-2.5138 35.6803,-2.6212 36.2387,-2.9881 36.451,-3.4424 36.249,-3.506 35.7605,-4.4004 35.671,-4.7609 35.8337,-4.8512 36.1709,-5.2296 36.4083,-6.2415 36.1841,-7.168 34.4152,-8.8018 33.6743))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012569-250525065834625/datasets/export for details.
DOI: 10.15468/dl.js4t5b
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina euchus Cohen, 1961",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-0.0352 28.8496,-9.0352 28.8496,-9.0352 19.8496,-0.0352 19.8496,-0.0352 28.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012572-250525065834625/datasets/export for details.
DOI: 10.15468/dl.ayz5kf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Koeleria micrathera (É.Desv.) Griseb.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012574-250525065834625/datasets/export for details.
DOI: 10.15468/dl.dz7uxh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina euchus Cohen, 1961",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-9.5482 4.7175,-9.0352 4.4397,-9.0352 10.8496,-16.709 10.8496,-16.3297 10.5455,-15.1301 10.2973,-14.7679 9.8172,-14.3248 9.5834,-14.2456 9.1632,-13.8032 8.9309,-13.7341 8.0101,-13.3252 7.2036,-11.9532 6.6399,-11.0468 5.863,-10.545 5.6439,-9.5482 4.7175))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012575-250525065834625/datasets/export for details.
DOI: 10.15468/dl.9ac9mr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina euchus Cohen, 1961",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-16.8057 20.1434,-16.8896 19.8496,-9.0352 19.8496,-9.0352 28.8496,-11.635 28.8496,-11.7824 28.7359,-13.29 28.2942,-13.9623 27.0596,-14.8996 26.4375,-15.2884 25.5014,-15.3356 24.99,-16.4235 23.914,-16.8295 22.8081,-17.1762 22.5133,-17.4325 21.9756,-17.6012 20.7987,-17.3601 20.3805,-16.8057 20.1434))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012576-250525065834625/datasets/export for details.
DOI: 10.15468/dl.nbmu26
title: Occurrence Download

description: A dataset containing 8724 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Koeleria pyramidata (Lam.) P.Beauv.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 8724 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012577-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.chhww4
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hoffmannola hansi Ev.Marcus & Er.Marcus, 1967"
 ]
}

 The dataset includes 30 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012578-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3aauk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina euchus Cohen, 1961",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-16.6672 18.7728,-16.5468 17.7486,-16.9133 16.7746,-17.0265 15.925,-17.4754 15.299,-17.9607 15.0106,-18.0159 14.6088,-17.2825 13.9103,-17.2971 12.4437,-17.1163 12.0176,-16.8424 11.8396,-16.9887 11.3363,-16.91 11.0108,-16.709 10.8496,-9.0352 10.8496,-9.0352 19.8496,-16.8896 19.8496,-17.0371 19.3335,-16.6672 18.7728))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012579-250525065834625/datasets/export for details.
DOI: 10.15468/dl.m7beag
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Kohautia amatymbica Eckl. & Zeyh.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 122 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012580-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rxhyzs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina euchus Cohen, 1961",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-10.6036 29.6447,-11.635 28.8496,-9.0352 28.8496,-9.0352 33.4562,-9.6631 32.8696,-9.7766 32.3158,-10.3241 31.5424,-10.3942 30.6542,-10.1716 30.2225,-10.6036 29.6447))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012581-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.29090912.v2
title: Mollusca - Gastropoda

description: Supplementary MaterialAchim Paululat and Günter Purschke : “Metazoa – Morphology and Evolution of Animals. A Practical Guide to the Dissection and Comparative Study of Animals"International Edition: ISBN 978-3-662-69903-4German Edition: ISBN 978-3-662-66183-3
DOI: 10.15468/dl.2pg7yj
title: Occurrence Download

description: A dataset containing 602 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Lactuca tatarica (L.) C.A.Mey.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 602 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012582-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sy5vqq
title: Occurrence Download

description: A dataset containing 120577 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ornithogalum umbellatum L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 120577 records from 854 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012573-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.6hdr7sr57
title: Bone mineral density & hand x-ray cortical percentages in females

description: This data set serves as a resource for correlating hand x-rays with bone
 mineral density (BMD) scans taken within one year of one another. The need
 for increased methods of screening for low BMD is needed. Therefore, we
 used this dataset to determine if hand and wrist x-rays could be used to
 screen for forearm osteopenia and osteoporosis. 
description: <strong>DXAs</strong>: DXA scans are of the hip,
 spine, and wrists.  There were prospective participants that had DXAs on a
 GE Healthcare Lunar iDXA scanner (GE Healthcare, Chicago, Illinois, USA)
 with enCORE software Version 16 (GE Healthcare, Chicago, Illinois, USA),
 retrospective chart review participants' DXAs were taken both on a GE
 Lunar DXA scanner and Hologic Horizon scanner (Hologic Inc., Bedford, MA,
 USA) with APEX software version 5.6.0.5 (Hologic Inc., Bedford, MA, USA).
 BMD and T-scores were calculated for the following locations: total AP
 spine (L1, L2, L3, L4, L1-L4), femoral neck (left and right), femoral
 trochanter (left and right), total hip (left and right), 1/3 distal
 forearm (left and right), most distal forearm (left and right), and total
 forearm (left and right). In one case, total AP spine was taken from L1-L3
 instead of L1-L4 due to technical difficulties. Another patient did not
 have values from the right femur due to a prior fracture.
 <strong>Cortical Percentage</strong>: The PA view of
 the available hand or wrist x-rays was uploaded into ImageJ for image
 processing. The mid-diaphysis of the second metacarpal was localized with
 the magnification function to optimize measurement. The observer chose the
 isthmus as the site along the second metacarpal by visually assessing the
 narrowest part of the cortex. The measurement tool was then used to
 measure the diameter of the second metacarpal at the isthmus (portion A).
 The second measurement was made parallel to this, at the same location,
 and only included the intramedullary component (portion B). We then
 calculated the cortical percentage by the following formula
 [(A-B)/A]x100(21). Measurements were confirmed by two independent
 raters. <strong>Other data
 included</strong>: participants' age, hand dominance, and BMI
 (categorized into bins).
DOI: 10.5281/zenodo.17778604
title: Acoustic remote sensing with deep learning enables non-invasive estimation of seabird nest density

description: This repository contains the datasets, trained models, and code used in the study:

Terranova et al. (2026)

Acoustic remote sensing with deep learning enables non-invasive estimation of seabird nest density

This repository contains all scripts, trained models, and data products used for the automated detection of Ecstatic Display Songs (EDS) in African penguins, as well as their application to long-duration acoustic recordings and subsequent nest density analyses.

├── data/│   ├── cnn_vs_manual_annotation.tsv│   ├── eds_cnn_detections_stp2024_filtered.tsv│   ├── eds_cnn_detections_stp2025_filtered.tsv│   ├── eds_peak_and_nest_counts_by_point_2024_2025.csv│   ├── merged_eds_weather_2024.csv│   ├── merged_eds_weather_2025.csv│   ├── nest_count_2024.csv│   ├── nest_count_2025.csv│││── model/│   ├── best_model.h5│   ├── config.json│   ├── grid_search_results.csv│   ├── history.pkl│   ├── summary.txt│   │├── code/│   ├── python/│   │   ├── cnn_vs_manual_annotation.ipynb│   │   ├── eds_cnn_dataset_and_training.py│   │   ├── eds_cnn_inference_long_recordings_stp2024.py│   │   ├── eds_cnn_inference_long_recordings_stp2025.py│   │   └── requirements.txt│   └── R/│       ├── eds_nest_density_gam_analysis.R│       └── metadata_readme.txt

Due to file size constraints, the raw acoustic recordings used in this study are not included in this repository but are available from the authors upon request.
DOI: 10.5281/zenodo.17778605
title: Acoustic remote sensing with deep learning enables non-invasive estimation of seabird nest density

description: This repository contains the datasets, trained models, and code used in the study:

Terranova et al. (2026)

Acoustic remote sensing with deep learning enables non-invasive estimation of seabird nest density

This repository contains all scripts, trained models, and data products used for the automated detection of Ecstatic Display Songs (EDS) in African penguins, as well as their application to long-duration acoustic recordings and subsequent nest density analyses.

├── data/│   ├── cnn_vs_manual_annotation.tsv│   ├── eds_cnn_detections_stp2024_filtered.tsv│   ├── eds_cnn_detections_stp2025_filtered.tsv│   ├── eds_peak_and_nest_counts_by_point_2024_2025.csv│   ├── merged_eds_weather_2024.csv│   ├── merged_eds_weather_2025.csv│   ├── nest_count_2024.csv│   ├── nest_count_2025.csv│││── model/│   ├── best_model.h5│   ├── config.json│   ├── grid_search_results.csv│   ├── history.pkl│   ├── summary.txt│   │├── code/│   ├── python/│   │   ├── cnn_vs_manual_annotation.ipynb│   │   ├── eds_cnn_dataset_and_training.py│   │   ├── eds_cnn_inference_long_recordings_stp2024.py│   │   ├── eds_cnn_inference_long_recordings_stp2025.py│   │   └── requirements.txt│   └── R/│       ├── eds_nest_density_gam_analysis.R│       └── metadata_readme.txt

Due to file size constraints, the raw acoustic recordings used in this study are not included in this repository but are available from the authors upon request.
DOI: 10.5061/dryad.s4mw6m9b7
title: Thiamethoxam soil contaminations reduce the fertility of a soil-dwelling beetle (Aethina tumida)

description: The sixth mass extinction event is underway and environmental pollution is
 one major driver. Of particular concern are global insect declines, as
 their roles in ecosystem functionality and human food security are
 indispensable. Even though environmental pollutants are known to reduce
 fertility, their potential effects on insect fitness remain poorly
 understood - especially for soil-dwelling species. Here, we show that
 fertility of soil-dwelling beetles, Aethina tumida, is reduced,
 on average, by half due to field-realistic neonicotinoid soil
 contaminations. In the laboratory, pupating beetles were exposed via soil
 to concentrations of the neonicotinoid thiamethoxam that reflect global
 pollution of agricultural and natural habitats. Emerged adult phenotypes
 and reproduction were measured, and even the lowest concentration reported
 from natural habitats reduced subsequent reproduction by 50%. The data are
 most likely a conservative estimate as the beetles were only exposed
 during pupation. Since the tested concentrations reflect ubiquitous global
 soil pollution, the data reveal a plausible mechanism for ongoing insect
 declines. An immediate reduction in environmental pollutants is urgently
 required if our aim is to mitigate the prevailing loss of species
 biodiversity.
DOI: 10.5061/dryad.bk3j9kdhb
title: Trade-offs between immunity and competitive ability in fighting ant males

description: Background: Fighting disease while fighting rivals exposes males to
 constraints and trade-offs during male-male competition. We here tested
 how both the stage and intensity of infection with the fungal pathogen
 Metarhizium robertsii interfered with fighting success in Cardiocondyla
 obscurior ant males. Males of this species have evolved long lifespans
 during which they can gain many matings with the young queens of the
 colony, if successful in male-male competition. Since male fights occur
 inside the colony, the outcome of male-male competition can further be
 biased by interference of the colony’s worker force. Results: We found
 that severe, but not yet mild, infection strongly impaired male fighting
 success. In late-stage infection, this could be attributed to worker
 aggression directed towards the infected rather than the healthy male and
 an already very high male morbidity even in the absence of fighting.
 Shortly after pathogen exposure, however, male mortality was particularly
 increased during combat. Since these males mounted a strong immune
 response, their reduced fighting success suggests a trade-off between
 immune investment and competitive ability already early in the infection.
 Even if the males themselves showed no difference in the number of attacks
 they raised against their healthy rivals across infection stages and
 levels, severely infected males were thus losing in male-male competition
 from an early stage of infection on. Conclusions: Males of the ant C.
 obscurior have evolved high immune investment, triggering an effective
 immune response very fast after fungal exposure. This allows them to cope
 with mild pathogen exposures without cost to their success in male-male
 competition, and hence to gain multiple mating opportunities with the
 emerging virgin queens of the colony. Under severe infection, however,
 they are weak fighters and rarely survive combat already at early
 infection when raising an immune response, as well as at progressed
 infection, when they are morbid and preferentially targeted by worker
 aggression. Workers thereby remove males that pose a future disease threat
 by biasing male-male competition. Our study thus revealed a novel social
 immunity mechanism for how social insect workers protect the colony
 against disease risk.
description: Data were obtained by experimental exposure of
 <em>Cardiocondyla</em> <em>obscurior</em> ants
 with the fungal pathogen <em>Meztarhizium</em>
 <em>robertsii</em>, followed by behavioural observation,
 survival experiments and immune gene expresssion measurements.