cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3840575
title: Results "Anti-obesity effects of individual or combination treatment with Spirulina platensis and green coffee bean aqueous extracts in high-fat diet-induced obese rats"

description: <strong>Background</strong>: Obesity, a chronic disease, is associated with serious health risks, including premature mortality. This study aimed to investigate the anti-obesity effects of individual or combination treatment with <em>Spirulina platensis</em> and green coffee bean aqueous extracts in high-fat diet-induced (HFD) obese rats. <strong>Methods</strong>: Rats were fed on HFD to induce obesity. Corn oil in the HFD accounted for 50.98 % of the calories. Fifty rats were divided into the following five groups (10 rats/group): control, HFD, HFD-<em>Spirulina</em>, HFD-coffee, HFD-<em>Spirulina</em> and coffee co-treatment groups. The serum levels of lipid, leptin, and insulin, as well as the hepatic mRNA levels of fatty acid synthase (FAS), peroxisome proliferator-activated receptor gamma coactivator-1 alpha (PGC-1α), and peroxisome proliferator-activated alpha receptor (PPARα) were estimated. <strong>Results</strong>: The <em>Spirulina</em> and/or green coffee bean aqueous extracts decreased the final bodyweight and liver weight, and the serum levels of alanine aminotransferase, aspartate aminotransferase, and alkaline phosphatase. Additionally, the extracts decreased the serum levels of total cholesterol, triacylglycerol, low-density lipoprotein-cholesterol, leptin, and glucose, and enhanced the serum insulin level. Furthermore, the extracts enhanced the PGC-1α and PPARα mRNA levels and decreased the FAS mRNA levels. <strong>Conclusion</strong>: The individual or combination treatment with <em>Spirulina</em> and green coffee bean extracts decreased obesity-induced hyperlipidemia. Thus, <em>Spirulina platensis</em> and green coffee can be potentially used to treat obesity.
DOI: 10.5281/zenodo.3840576
title: Results "Anti-obesity effects of individual or combination treatment with Spirulina platensis and green coffee bean aqueous extracts in high-fat diet-induced obese rats"

description: <strong>Background</strong>: Obesity, a chronic disease, is associated with serious health risks, including premature mortality. This study aimed to investigate the anti-obesity effects of individual or combination treatment with <em>Spirulina platensis</em> and green coffee bean aqueous extracts in high-fat diet-induced (HFD) obese rats. <strong>Methods</strong>: Rats were fed on HFD to induce obesity. Corn oil in the HFD accounted for 50.98 % of the calories. Fifty rats were divided into the following five groups (10 rats/group): control, HFD, HFD-<em>Spirulina</em>, HFD-coffee, HFD-<em>Spirulina</em> and coffee co-treatment groups. The serum levels of lipid, leptin, and insulin, as well as the hepatic mRNA levels of fatty acid synthase (FAS), peroxisome proliferator-activated receptor gamma coactivator-1 alpha (PGC-1α), and peroxisome proliferator-activated alpha receptor (PPARα) were estimated. <strong>Results</strong>: The <em>Spirulina</em> and/or green coffee bean aqueous extracts decreased the final bodyweight and liver weight, and the serum levels of alanine aminotransferase, aspartate aminotransferase, and alkaline phosphatase. Additionally, the extracts decreased the serum levels of total cholesterol, triacylglycerol, low-density lipoprotein-cholesterol, leptin, and glucose, and enhanced the serum insulin level. Furthermore, the extracts enhanced the PGC-1α and PPARα mRNA levels and decreased the FAS mRNA levels. <strong>Conclusion</strong>: The individual or combination treatment with <em>Spirulina</em> and green coffee bean extracts decreased obesity-induced hyperlipidemia. Thus, <em>Spirulina platensis</em> and green coffee can be potentially used to treat obesity.
DOI: 10.5281/zenodo.3840896
title: Implementation of Genomic Variant Calling Using GATK4, SPARK, WDL, CROMWELL and DOCKER Over Simulated Ebola NGS Dataset.

description: Ebola genome is manually mutated to contain structural variants. There are seven mutated ebola genomes each one for two large deletions, insertions, duplications, translocations, inversions, one complex variant1 (consecutive three mutations - insertion, duplication and deletion) and one complex variants2 (consecutive three mutations - deletion, duplication and deletion). All insertions are novel sequence insertion. Paired-end illumine RNASEQ reads are simulated in fastq format.
DOI: 10.5281/zenodo.3840897
title: Implementation of Genomic Variant Calling Using GATK4, SPARK, WDL, CROMWELL and DOCKER Over Simulated Ebola NGS Dataset.

description: Ebola genome is manually mutated to contain structural variants. There are seven mutated ebola genomes each one for two large deletions, insertions, duplications, translocations, inversions, one complex variant1 (consecutive three mutations - insertion, duplication and deletion) and one complex variants2 (consecutive three mutations - deletion, duplication and deletion). All insertions are novel sequence insertion. Paired-end illumine RNASEQ reads are simulated in fastq format.
DOI: 10.6073/pasta/f3b3549cf2ac5a7469dc894957f7dd01
title: Sawgrass above ground biomass from the Shark River Slough, Everglades National Park (FCE LTER), South Florida from November 2000 to Present

description: Sawgrass biomass is measured for TS/Ph-1, 2, 3, & 6 since 1999; TS/Ph-4 & 5 since 1997 to 2006; SRS-1b, 2, & 3 since 2000; SRS1c for 2005 to 2006, and SRS1d since 2006. Three 1 m2 plots are placed on each site. The sites are measured every two months. The number of sawgrass plants is counted for each 1 m2 plot and one third or a minimum of fifteen plants is measured. For each measured plant, measurements of the total number of live leaves, length of the live leaves, and culm diameter at the base are taken. From these measurements we calculate the average leaf length, and the sum of the length of the leaves. We created a model for biomass using a stepwise regression to see which of the variables measured and calculated are more correlated to explain plant biomass. Obtaining the mean biomass for the plants within the plot and multiplying it by the number of plants counted in the plot calculates biomass for each plot. The total biomass for each plot is summed with the other two plots in the same site, and they are averaged to obtain one biomass number per site. To validate our model, plant clippings are obtained in which four plants are clipped (small, medium, large, inflorescence) from each site. The same measurements are applied to the clipped plants as those applied to the measured plants in the plots. The plant clippings are oven dried at 70 degrees C and weighed.
DOI: 10.6084/m9.figshare.12357245
title: KubernetesSecurityBestPractices.xlsx

description: Kubernetes security best practices
DOI: 10.17632/f6p7sf7cfs.1
title: Supplementary Appendix I
DOI: 10.17632/ppy7rfwvyw.1
title: Clinical and psychosocial factors affecting work productivity among patients with hidradenitis suppurativa: A pilot study

description: Appendix I.Text
DOI: 10.17632/ppy7rfwvyw.2
title: Clinical and psychosocial factors affecting work productivity among patients with hidradenitis suppurativa: A pilot study
DOI: 10.18112/openneuro.ds002837.v1.0.2
title: Naturalistic Neuroimaging Database
DOI: 10.21227/t9ww-dg40
title: Magnetic field signal at a depth of 30m in seawater.

description: Weconductedan undersea magnetic induction (MI) communication experiment in the South China Sea to demonstrate the feasibility of a rotating permanent magnet transmitter.The rotating permanent magnet transmitter is placed on the floating platform for generating the inductive magnetic field, and a ferrite-rod coil with the glue-filled waterproof seal is hung in the seawater as a receiving antenna. This data is a received magnetic signal at a depth of 30 m in seawater.
DOI: 10.21227/y7eq-bt25
title: Magnetic field signal at a depth of 30m in seawater.

description: Weconductedan undersea magnetic induction (MI) communication experiment in the South China Sea to demonstrate the feasibility of a rotating permanent magnet transmitter.The rotating permanent magnet transmitter is placed on the floating platform for generating the inductive magnetic field, and a ferrite-rod coil with the glue-filled waterproof seal is hung in the seawater as a receiving antenna. This data is a received magnetic signal at a depth of 30 m in seawater.
DOI: 10.6084/m9.figshare.12357245.v1
title: KubernetesSecurityBestPractices.xlsx

description: Kubernetes security best practices
DOI: 10.7910/dvn/vxjpn5/n6rpe2
title: Bechteletal_ED_Fig1D.pdf

description: :unav
DOI: 10.15468/dwfd7q
title: Cocconeis molesta Kütz., C. diaphana W. Sm. and C. dirupta W. Greg. (Bacillariophyta): type material, ambiguities and possible synonymies

description: This dataset contains the digitized treatments in Plazi based on the original journal article Riaux-Gobin, Catherine, Compère, Pierre, Jordan, Richard W., Coste, Michel, Yesilyurt Criobe-Usr, Jovita C., Irstea, Japan. (2016): Cocconeis molesta Kütz., C. diaphana W. Sm. and C. dirupta W. Greg. (Bacillariophyta): type material, ambiguities and possible synonymies. European Journal of Taxonomy 204: 1-18, DOI: http://dx.doi.org/10.5852/ejt.2016.204
DOI: 10.17632/z7typjdrz5.1
title: SWHC-001

description: SWHC004
DOI: 10.5281/zenodo.3840007
title: Data and Code from Pritchard & Vallejo-Marin (2020) "Floral vibrations by buzz-pollinating bees achieve higher frequency, velocity and acceleration than flight and defence vibrations"

description: Data and Code from Pritchard & Vallejo-Marin (2020) "Floral vibrations by buzz-pollinating bees achieve higher frequency, velocity and acceleration than flight and defence vibrations" Journal of Experimental Biology. doi: 10.1242/jeb.220541
DOI: 10.3886/e119571
title: Stress in Boom Times: Understanding Teachers' Economic Anxiety in a High-Cost Urban District

description: Despite growing concern over teachers’ ability to live comfortably where they work, we know little about the systematic relationship between affordability and teachers’ well-being, particularly in high-cost urban areas. We use novel survey data from San Francisco Unified School District to identify the patterns and prevalence of economic anxiety among teachers and assess how this anxiety predicts teachers’ attitudes, behaviors, and turnover. We find that San Francisco teachers have far higher levels of economic anxiety on average than a national sample of employed adults, and that younger teachers are particularly financially anxious. Furthermore, such anxiety predicts measures of job performance and teacher retention— economically anxious teachers tend to have more negative attitudes about their jobs, have worse attendance, and are 50% more likely to depart the district within 2 years after the survey.
description: Response Rates: The response rate for our survey of traditional public school teachers in San Francisco Unified School District was 69%.
description: Classroom teachers.
DOI: 10.3886/e119571v1
title: Stress in Boom Times: Understanding Teachers' Economic Anxiety in a High-Cost Urban District

description: Despite growing concern over teachers’ ability to live comfortably where they work, we know little about the systematic relationship between affordability and teachers’ well-being, particularly in high-cost urban areas. We use novel survey data from San Francisco Unified School District to identify the patterns and prevalence of economic anxiety among teachers and assess how this anxiety predicts teachers’ attitudes, behaviors, and turnover. We find that San Francisco teachers have far higher levels of economic anxiety on average than a national sample of employed adults, and that younger teachers are particularly financially anxious. Furthermore, such anxiety predicts measures of job performance and teacher retention— economically anxious teachers tend to have more negative attitudes about their jobs, have worse attendance, and are 50% more likely to depart the district within 2 years after the survey.
description: Response Rates: The response rate for our survey of traditional public school teachers in San Francisco Unified School District was 69%.
description: Classroom teachers.
DOI: 10.5281/zenodo.3840006
title: Data and Code from Pritchard & Vallejo-Marin (2020) "Floral vibrations by buzz-pollinating bees achieve higher frequency, velocity and acceleration than flight and defence vibrations"

description: Data and Code from Pritchard & Vallejo-Marin (2020) "Floral vibrations by buzz-pollinating bees achieve higher frequency, velocity and acceleration than flight and defence vibrations" Journal of Experimental Biology. doi: 10.1242/jeb.220541
DOI: 10.7910/dvn/vxjpn5/nnysyh
title: Bechteletal_ED_Fig1D.tif

description: :unav
DOI: 10.25334/48g8-6y44
title: Data management and introduction to QGIS and RStudio for spatial analysis

description: Students learn about the importance of good data management and begin to explore QGIS and RStudio for spatial analysis purposes. Students will explore National Land Cover Database raster data and made-up vector point data on both platforms.
DOI: 10.3886/e119568
title: Data and Code for: Correcting the Error in Gamma Discounting

description: <br>In “Gamma Discounting” Martin L. Weitzman concludes that certainty equivalent discount rates should decline significantly over time. He draws this conclusion from fitting a Gamma distribution to the responses of 2,160 economists asked to give a discount rate estimate and calculating effective discount rates from it. <br><br>The paper to which this dataset pertains replicates Weitzman's calculations on the basis of the data of the above mentoned survey, and repeats the calcualtions with more appropiate methods.<br>
DOI: 10.3886/e119568v1
title: Data and Code for: Correcting the Error in Gamma Discounting

description: <br>In “Gamma Discounting” Martin L. Weitzman concludes that certainty equivalent discount rates should decline significantly over time. He draws this conclusion from fitting a Gamma distribution to the responses of 2,160 economists asked to give a discount rate estimate and calculating effective discount rates from it. <br><br>The paper to which this dataset pertains replicates Weitzman's calculations on the basis of the data of the above mentoned survey, and repeats the calcualtions with more appropiate methods.<br>
DOI: 10.5255/ukda-sn-853930
title: Activism in regions of crime-related violence and corruption 2017-2019
DOI: 10.17632/24bh4cvhzd.1
title: PPI MS raw data Pirh2 HEK293-T

description: Mass-spectrometry analysis of Pirh2-GST binding proteins in HEK293-T cells
DOI: 10.25386/genetics.12354695
title: Supplemental Material for Serrano-Saiz et al., 2020

description: Strain list
DOI: 10.25386/genetics.12354695.v1
title: Supplemental Material for Serrano-Saiz et al., 2020

description: Strain list
DOI: 10.26066/rds.20695
title: Poverty and Vulnerability Assessment (PVA) questionnaire dataset of Myanmar

description: The Poverty and Vulnerability Assessment (PVA) dataset was developed to capture the micro-level perspective of people's experiences with poverty and vulnerability and to monitor poverty and vulnerability trends on the ground. The assessment was based on a standardized questionnaire that has been developed to assess, describe, and analyse the situation of poor and vulnerable people in the HKH region. This will lead to an enhanced understanding of multiple aspects of livelihood assets, structures, and the processes that underpin such assets. It will also help determine levels of access, terms of exchange, and returns from livelihood assets as well as livelihood strategies and their outcomes for the poor.
DOI: 10.5281/zenodo.3840561
title: Data for "Reduced-Order Biogeochemical Flux Model for Upper OceanBiophysical Simulations"

description: Data, figure generation scripts, and zero-dimensional version of the 17 species Biogeochemical Flux Model (BFM17) for the paper "Reduced-Order Biogeochemical Flux Model for Upper OceanBiophysical Simulations" submitted to Geoscientific Model Development.
DOI: 10.6084/m9.figshare.3761562.v1495
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.17632/9cykcc3svn.1
title: Analysis of the effect of thermal runaway initiation conditions on the severity of thermal runaway – numerical simulation and machine learning study
DOI: 10.18112/openneuro.ds002841.v1.0.0
title: Intuitive physics with fMRI
DOI: 10.5281/zenodo.3839283
title: Data file for Rainer M & Mucke H, Acutil in mild cognitive impairment or early dementia: an exploratory observational pilot study

description: Legend:to column headers: <strong>Random No.:</strong> Participant randomization code<br> <strong>ChEI:</strong> Cholinesterase inhibitor as background therapy?<br> <strong>V(x)_Date:</strong> Date of sequential patient visits (x = 1-6 and EOT = end of therapy)<br> <strong>V(x)_CDR</strong>: Clinical Dementia Rating Scale - Sum of Boxes at respective visit<br> <strong>V(x)_ADAS:</strong> Alzheimer Diseases Assessment Scale cognitive subscale at respective visit<br> <strong>V(x)_COWAT: </strong>Controlled Oral Word Association Test score at respective visit<br> <strong>V(x)_MMSE:</strong> Mini-Mental State Exam at respective visit<br>
DOI: 10.5281/zenodo.3839284
title: Data file for Rainer M & Mucke H, Acutil in mild cognitive impairment or early dementia: an exploratory observational pilot study

description: Legend:to column headers: <strong>Random No.:</strong> Participant randomization code<br> <strong>ChEI:</strong> Cholinesterase inhibitor as background therapy?<br> <strong>V(x)_Date:</strong> Date of sequential patient visits (x = 1-6 and EOT = end of therapy)<br> <strong>V(x)_CDR</strong>: Clinical Dementia Rating Scale - Sum of Boxes at respective visit<br> <strong>V(x)_ADAS:</strong> Alzheimer Diseases Assessment Scale cognitive subscale at respective visit<br> <strong>V(x)_COWAT: </strong>Controlled Oral Word Association Test score at respective visit<br> <strong>V(x)_MMSE:</strong> Mini-Mental State Exam at respective visit<br>
DOI: 10.5523/bris.3lof3ykgnw1f029iym495sbeej
title: Data from diamond seeding paper in Carbon

description: Raw data for the paper in Carbon about 2-step seeding for diamond on GaN
DOI: 10.17632/gf48ynxjn5.2
title: Data for: Understanding the Structure and Determinants of City Network through Intra-firm Service Relationships: The Case of Guangdong-Hong Kong-Macao Greater Bay Area

description: APS list
DOI: 10.25345/c5wt5r
title: MassIVE MSV000085457 - Targeted and Untargeted Analysis of Secondary Metabolites to Monitor Growth and Quorum Sensing Inhibition for Methicillin-resistant Staphylococcus aureus (MRSA)
title: With this study, we developed a method that enables the activity of quorum sensing inhibitors to be measured using ultra-performance liquid chromatography coupled to mass spectrometry (UPLC-MS). This method is an improvement over existing methods because it can be employed to distinguish antimicrobial activity from quorum sensing inhibition activity based on the UPLC-MS data. This is possible by simultaneously tracking production of metabolites regulated by the agr quorum sensing system (AIP-I and formylated delta-toxin) and a metabolite that appears not to be agr regulated under the conditions of this study (aureusimine B). The newly developed method provides more nuanced indication of how metabolite production changes over time and in response to quorum sensing or growth inhibition than is possible with commonly employed spectroscopic methods.
DOI: 10.18112/openneuro.ds002842.v1.0.0
title: L2_SENTENCES
DOI: 10.3886/e119568v2
title: Data and Code for: Correcting the Error in Gamma Discounting

description: <br>In “Gamma Discounting” Martin L. Weitzman concludes that certainty equivalent discount rates should decline significantly over time. He draws this conclusion from fitting a Gamma distribution to the responses of 2,160 economists asked to give a discount rate estimate and calculating effective discount rates from it. <br><br>The paper to which this dataset pertains replicates Weitzman's calculations on the basis of the data of the above mentoned survey, and repeats the calcualtions with more appropiate methods.<br>
DOI: 10.5519/qd.c13tdew8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (4557156 records)
DOI: 10.5281/zenodo.3840624
title: Molecular docking COVID-19

description: Coronavirus disease 2019 drug discovery through molecular docking
DOI: 10.5281/zenodo.3840625
title: Molecular docking COVID-19

description: Coronavirus disease 2019 drug discovery through molecular docking
DOI: 10.7910/dvn/vxjpn5/xbnwzv
title: Bechteletal_ED_Fig1B.tif

description: :unav
DOI: 10.5281/zenodo.3839747
title: Towards a Realistic Explosion Landscape for Binary Population Synthesis

description: Data from: Towards a Realistic Explosion Landscape for Binary Population Synthesis by Patton, Rachel A. and Sukhbold, Tuguldur<br> (2020). (Submitted to MNRAS) - Detailed descriptions of calculations are provided in the paper, but<br> please feel free to get in touch with any of us with questions, or<br> if you need something that is not provided here. Contacts:<br> Rachel Patton = patton[dot]502[at]osu[dot]edu<br> Tuguldur Sukhbold = tuguldur[dot]s[at]gmail[dot]com<br> - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Below are brief descriptions of each dataset. More details can be found in the paper. kepler_table.tar.gz (1.0GB)<br> -These are tables for our entire set of 3496 KEPLER CO-core models, containing the final presupernova structure and composition quantities for each zone. Core masses range from 2.5 to 10.0 in increments of 0.1 Msun and the initial composition ranges from 5% carbon and 95% oxygen to 50% carbon and oxygen, in incrmeents of 1%. Each file has the naming convention "mA_B.ktbl" where A is the core mass in Msun (2.5, 2.6, etc.) and B represents the initial carbon mass fraction as the number of increments of 0.01 taken from 0.05 (5%). For example, the file 'm8.0_27.ktbl' would be for an 8 Msun core with an initial carbon mass fraction of 0.32 (= 0.05 + 27*0.01). kepler_datatset.tar.gz (30.4KB)<br> -This folder contains four tables listing the presupernova parameters evaluated from all of our KEPLER CO-cores: M_fe, the iron core mass, M4, the mass enclosed where the entropy per baryon reaches 4 Kb, mu_4, the radial gradient of mass at the location of M4, and xi_2.5, the compactness parameter. See section#3 of our paper for details on how these were evaluated. Columns represent each CO-core mass and rows represent starting carbon mass fraction. inlist (2.8KB)<br> -This is the inlist used to create 760 MESA (version 7624) CO-core models, presented in section#4.1. The only thing that changes between models is the CO-core mass, set by 'initial_mass' and the composition, set by 'accretion_species_xa(1)' and 'accretion_species_xa(2)'. In our grid, we covered the same mass and composition range as the KEPLER models, keeping the same mass increment but increasing the carbon mass increment from 0.01 to 0.05.
DOI: 10.5258/soton/d1327
title: Dataset for "A Highly Sensitive Electrochemical Sensor of Polysulfides in Polymer Lithium-Sulfur Batteries"

description: Data to support Medding, N. Jubez, X., Li, C. and Garcia-Araez, N. (2020) A Highly Sensitive Electrochemical Sensor of Polysulfides in Polymer Lithium-Sulfur Batteries. Journal of the Electrochemical Society v.167(8), 080520, https://doi.org/10.1149/1945-7111/ab8ce9
DOI: 10.5281/zenodo.3840638
title: Jaffe et al. 2020 CPR Genome Subset

description: Subset of Candidate Phyla Radiation genomes associated with Jaffe et al. 2020 ("<strong>The rise of diversity in metabolic platforms across the Candidate Phyla Radiation")</strong>, in .fasta format.