cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16863646.v3
title: Table S1 Seven reference MTB genomes used to generate the magnetosome-protein reference file

description: <b>Table S1 Seven reference MTB genomes used to generate the magnetosome-protein reference file</b><br>
DOI: 10.6084/m9.figshare.17005987.v1
title: ALIGNN for hMOF DB

description: ALIGNN for hMOF DBhttps://github.com/usnistgov/alignn<br>
DOI: 10.6084/m9.figshare.28432886.v1
title: Liquidambar.csv

description: The number of ambrosia beetles, Platypus quercivorus, that landed on non-host trees was investigated using sticky sheet traps. The dataset includes candidate factors that may affect beetle landing.<br>Tree: Individual tree numberDate: Number of days elapsed since June 17, 2021Total: Number of beetles captured by the sticky trapCD07: Host canopy density within a 7 m radiusBA01: Host basal area within a 1 m radiusNB05: Number of beetles captured by a sticky trap set within a 5 m radiusDBH: Diameter at 1.3 m above the ground of the subject treeDuration: Interval (in days) between beetle sampling events
DOI: 10.6084/m9.figshare.28768637.v1
title: <i>Streptococcus pneumoniae </i>panRG

description: A pre-built panRG for<i> </i><i>Streptococcus pneumoniae </i>for use with Amira.
DOI: 10.17632/55h4fxt79t
title: HSK31679 alleviates MASLD by suppressing monoglucosylation of gut microbial sphingolipids

description: Background: As the first approved medication for metabolic dysfunction-associated steatohepatitis (MASH), thyroid hormone receptor β (THR-β) agonist MGL-3196 (Resmetirom) has been highly spotlighted as the liver-directed, bioactive oral drug. However, it was also identified with remarkable heterogeneity of individual clinical efficacy and its interference with gut microbiota in host hepatoenteral circulation was still undocumented.
Methods: We compared MASH attenuation by MGL-3196 and its derivative drug HSK31679 in germ-free (GF) and specific-pathogen free (SPF) mice to evaluate the role of gut microbiota. Then deep cross-omics analyses of microbial metagenome, metabolome and single-cell RNA-sequencing were clinically applied into the randomized, double-blind, placebo-controlled multiple-ascending-dose (MAD) cohort of HSK31679 treatment (n = 50), to comprehensively investigate the altered gut microbiota metabolism and circulating immune signatures.
Results: HSK31679 outperformed MGL-3196 in ameliorating MASH diet-induced steatohepatitis of SPF mice but not GF mice. In the MAD cohort of HSK31679, relative abundance of B. thetaiotaomicron was significantly enriched to impair glucosylceramide synthase (GCS)-catalyzed monoglucosylation of microbial Cer(d18:1/16:0) and Cer(d18:1/24:1). In stark contrast to the non-inferiority MASH resolution between MGL-3196 and HSK31679 for GFBT△GCS mice, HSK31679 manifested superior steatohepatitis alleviation than MGL-3196 for GFBTWT mice, which may attribute to its steric hindrance with R123 and Y401 of gut microbial GCS. In stool samples with high GCS activity, the administration of 160 mg HSK31679 has induced a shift in peripheral compartments towards an immunosuppressive niche, characterized by the down-regulation of CD8α+ dendritic cells and MINCLE+ macrophages.
Conclusions: This study has provided novel insights into the indispensable gut microbiota for HSK31679 treatment, which revealed microbial GCS may serve as its prognostic biomarker of MASH treatment, as well as the new target for further strategies of microbiota-based MASH therapeutics.
DOI: 10.17632/r82dsnnprt
title: Effects of a synthetic analogue of the bovine appeasing pheromone on the overall welfare of dairy calves from birth through weaning. Supplemental data

description: Supplemental data for the study Effects of a synthetic analogue of the bovine appeasing pheromone on the overall welfare of dairy calves from birth through weaning
DOI: 10.6084/m9.figshare.11341001.v1
title: PfSPZ-Assemblies-Annotations

description: This project contains canu assemblies for four <i>P. falciparum</i> strains used for whole organism malaria vaccination and controlled human malaria infections. You will also find two sets of annotation files: gff3 files generated through gmap, and gff3 files generated through Companion. <br><br>Manuscript describing this work can be found here:<br>doi: https://doi.org/10.1101/684175<br>
DOI: 10.6084/m9.figshare.22227043.v5
title: Supplementary original data

description: The ongoing climate change is predicted to induce more weather extremes such as frequent drought and high-intensity precipitation events, causing more severe drying-rewetting cycles in soil. However, it remains largely unknown how these changes will affect soil nitrogen (N)-cycling microbes and the emissions of potent greenhouse gas nitrous oxide (N<sub>2</sub>O). Utilizing a field precipitation manipulation in a semi-arid grassland on the Loess Plateau, we examined how precipitation reduction (ca. −30%) influenced soil N<sub>2</sub>O and carbon dioxide (CO<sub>2</sub>) emissions in field, and in a complementary lab-incubation with simulated drying-rewetting cycles. Results obtained showed that precipitation reduction stimulated plant root turnover and N-cycling processes, enhancing soil N<sub>2</sub>O and CO<sub>2</sub> emissions in field, particularly after each rainfall event. Also, high-resolution isotopic analyses revealed that field soil N<sub>2</sub>O emissions primarily originated from nitrification process. The incubation experiment further showed that in field soils under precipitation reduction, drying-rewetting stimulated N mineralization and ammonia-oxidizing bacteria in favor of genera <em>Nitrosospira</em> and <em>Nitrosovibrio</em>, increasing nitrification and N<sub>2</sub>O emissions. These findings suggest that moderate precipitation reduction, accompanied with changes in drying-rewetting cycles under future precipitation scenarios, may enhance N cycling processes and soil N<sub>2</sub>O emissions in semi-arid ecosystems, feeding positively back to the ongoing climate change.
DOI: 10.6084/m9.figshare.25721184.v1
title: Supplementary Material for: Gamma Knife Radiosurgery for Cerebral Cavernous Malformations: Meta-analysis of Reconstructed Time-to-Event Data

description: Introduction: Cavernomas are vascular lesions with a genetic heritage that can be spotted on the central nervous system. Whenever these lesions are localized in eloquent regions, surgical resection is not recommended. In this type of situation, Gamma Knife stereotactic radiosurgery (GKRS) could be a feasible option for treating patients. Thus, we aim to explore the outcomes associated with this procedure.

Methods: We performed a systematic review and meta-analysis of reconstructed time-to-event data based on Kaplan-Meier curves. A thorough search was conducted on PubMed, Cochrane, Web of Science and Embase databases targeting papers that provided information regarding hemorrhagic outcomes associated with GKRS through Kaplan-Meier curves.

Results: After a systematic search in the specific databases, seven studies were included in this review. Notably, a total of 1071 patients had 1104 cavernomas treated by GKRS. Assessment of short-term and long-term post-procedure outcomes was performed, with the estimated overall events-free rate at 2 years being 89.8% (95% CI 87.7 – 91.5), whilst, at ten years, the estimated overall events-free rate was 71.3% (95% CI 67.2 – 75.1).

Conclusion: GKRS seems to be a good alternative for control of symptomatic events in early and long-term follow-up, despite the need of further investigation provided by future studies.

Keywords: cavernoma, bleeding, radiosurgery, radiotherapy, vascular.
DOI: 10.6084/m9.figshare.27964467.v4
title: Source data of NCOMMS-23-31502

description: Date of NCOMMS-23-31502
DOI: 10.17632/5c723rpwz2
title: HiSBreast

description: This is a dataset of breast ultrasound images of patients collected from Ca Mau province general hospital - Vietnam. This data set includes 972 samples, and each sample has 03 parts: ultrasound image, description of signs and characteristics of breast tumors based on that image, and diagnosis results of doctors. All information is presented in Vietnamese.
The data set is organized into 04 folders:
- The "json" folder contains original information about the data such as: images in based64 format, descriptions, diagnoses, patient codes,...
- The "image" folder contains images that have been decoded from base64 format in json file.
- The "diagnoses" folder contains doctor's diagnoses corresponding to the images in the image folder.
- "descriptions" folder: contains descriptions of signs and disease characteristics corresponding to the images in the image folder.
DOI: 10.17632/vjv8szmms6
title: Carbon fiber before the thermal treatment of the filaments

description: Carbon fiber of Torayca T 300 3K brand (Japan) before the thermal treatment of the filaments.
DOI: 10.6084/m9.figshare.17072132.v1
title: Interacting effects of density and temperature on fish growth rates in freshwater protected populations

description: The datasets and underlying code used in Watson et al. Proceedings B paper
DOI: 10.6084/m9.figshare.25093736.v2
title: Cochlear zinc signaling dysregulation is associated with noise-induced hearing loss, and zinc chelation enhances cochlear recovery

description: Data for paper published in PNAS 2024 (revised)
DOI: 10.6084/m9.figshare.25512238.v1
title: Isotope data

description: Keystone species identification should consider species uniqueness alongside centrality. Clarifying the correlation between species centrality and uniqueness, or whether central species exhibit positional redundancy in food webs, can enhance the understanding of mechanisms stabilizing food webs. However, the findings from analyses utilizing different measures of uniqueness are contentious. In this study, the eutrophic lake Zhangze Lake is taken as the research object, and innovatively combines stable isotope techniques with the theory of uniqueness to assess species uniqueness under both traditional and improved methods, using the contribution of food source to consumers as a weighting factor. Additionally, we examined the relationship between different uniqueness indices and centrality to ascertain whether centrality species are functionally redundant, and we analyzed how thresholds and weak interaction considerations (i.e., improved uniqueness index) influence the results.
DOI: 10.6084/m9.figshare.25661193.v1
title: Menstrual Hygiene Practices and Reproductive Tract Infections Among Women living in Urban Slum of Sindh, Pakistan

description: This data is collected from women residing in urban slum entitled, "Menstrual Hygiene Practices and Reproductive Tract Infections Among Women living in Urban Slum of Sindh, Pakistan"
DOI: 10.6084/m9.figshare.25697928.v1
title: Genome annotated files for the reference genome of cashmere goat

description: Genome annotated files for the reference genome of cashmere goat(gff，pep，cds)
DOI: 10.6084/m9.figshare.28847570.v1
title: Analysis code to accompany the manuscript "Climate and species traits shape alpine plant responses to climate change in the U.S. Rocky Mountains"

description: Model selection code for the manuscript "Climate and species traits shape alpine plant responses to climate change in the U.S. Rocky Mountains"
DOI: 10.6084/m9.figshare.23641053.v1
title: Annotation files for two elephant genome assemblies

description: Genome annotation file for '<strong>Haplotype-resolved chromosome-scale genomes of the Asian and African Savannah Elephants</strong>'
DOI: 10.17632/r3hh2hf29k
title: International Input-Output Linkages and Changing Business Cycle Volatility

description: Replication materials for "International Input-Output Linkages and Changing Business Cycle Volatility"
DOI: 10.6084/m9.figshare.29038880.v4
title: Supplemental Material of "Photodissociation Dynamics of XH<sup>+ </sup>(X = Na, K, Rb, Cs): Rovibrationally Resolved Shape Resonances Driven by Potential Barriers in the Ultraviolet Spectrum"

description: The adiabatic PECs of XH<sup>+</sup> (X = Na, K, Rb, Cs) and the TDMs for electronic transitions from the ground state 1 <sup>2</sup>Σ<sup>+</sup> to the <sup>2</sup>Σ<sup>+</sup> and <sup>2</sup>Π excited states.The total photodissociation cross sections of NaH<sup>+</sup>, KH<sup>+</sup>, RbH<sup>+</sup> and CsH<sup>+</sup> at thermodynamic temperatures of 0 K, 500 K, 1000 K, 5000 K and 10000 K, respectively.<br>
DOI: 10.6084/m9.figshare.7637387.v5
title: Hannover Body Template

description: This is a free body template to be used for pain drawings, discomfort drawings, symptom drawings or drawings of any bodily sensation. We developed the two-dimensional outline with the goal to cover as much of the body surface as possible in four different views. Line drawings were made from the photos of a subject who took on the different poses. The template comes in a female, a male and a sexless version that are only minimally different to allow comparison.We also provide a dermatome overlay based on the work of Hansen and Schliack.<br>
DOI: 10.25400/lincolnuninz.8829431.v1
title: Meteorological observations at Lincoln: 2010

description: Lincoln meteorological observations have been taken at a range of sites over the years. A NIWA report (Mullan, A.B; Stuart, S.J; Hadfield, M.G; Smith, M.J (2010). Report on the Review of NIWA's 'Seven-Station' Temperature Series. NIWA Information Series No. 78. pp.129-154) records a number of these along with the work undertaken to reconcile the data between different sites. It is not yet clear which site(s) these measurements were taken at as we have not yet identified a correspondence with NIWA's records.<br><br>The datasets had been stored as .DAT files. The .DAT files have been uploaded as is, and also standardised and converted into .csv format.<br><br>Headers: The original .DAT files were stored without headers. Most of these could be recovered for the .csv by running the data through an old program that had been used in conjunction with the data, but one column remains "unknown".<br><br>Missing data: In the .DAT files, missing measurements are variously recorded, depending on context, as 0, -9, -99 or (in the case of Cloud cover) 9. In the .csv these values have been removed and left blank.<br><br>Units are most likely:<br><br>* solar radiation - probably MJ/m2 (megajoules per square metre)<br>* temperatures - Celsius (in early years possibly converted from an original measurement in Fahrenheit)<br>* rainfall - millimetres<br>* cloud - oktas (eighths of the sky taken up by cloud)<br>* wind run - kilometres<br>* vapour pressure - probably Pa (pascals)
DOI: 10.6084/m9.figshare.715896.v1
title: C-BARQ survey on dog behavior and temperament

description: This data set contains results about the behavior and temperament of ~12,000 dogs, according to the Canine Behaviora Assessment and Research Questionnaire (C-BARQ), described in Duffy & Serpell, Applied Animal Behavior Science 138:99-109 (2012).
DOI: 10.6084/m9.figshare.21315810.v1
title: Untitled Item

description: stress strain curves
DOI: 10.17632/639wzh2n8f
title: A comparison of proximal and remote optical sensor platforms for N status estimation in winter wheat

description: Dataset associated with the research paper by the same title submitted to Computer and Electronics for Agriculture.
DOI: 10.17632/czgpmp8cr7
title: Temperature Data Loggers Network

description: A network of a modular number of temperature sensors communicating through LoRa that stores data local or remotely
DOI: 10.17632/zjdncn6tkv
title: Indonesian Stand-Up Comedy Data Kompas TV

description: The "Indonesian Stand-Up Comedy Data" that was taken from Kompas TV's YouTube channel offers a thorough archive of user interactions and remarks related to stand-up comedy videos that have been broadcast on the site. Researchers and fans who want to learn more about the state of Indonesian stand-up comedy and trends in audience interaction will find this dataset to be a useful tool.
DOI: 10.25378/janelia.12108957.v2
title: Raw calcium imaging data (2-2) for Generation of stable heading representations in diverse visual scenes

description: Two-photon imaging data for the following paper.<br><br>Generation of stable heading representations in diverse visual scenes<br>Sung Soo Kim+, Ann M. Hermundstad, Sandro Romani, L. F. Abbott, Vivek Jayaraman+<br>Nature (2019) 576:126-131<br>Many animals rely on an internal heading representation when navigating in varied environments. How this representation is linked to the sensory cues that define different surroundings is unclear. In the fly brain, heading is represented by 'compass' neurons that innervate a ring-shaped structure known as the ellipsoid body. Each compass neuron receives inputs from 'ring' neurons that are selective for particular visual features; this combination provides an ideal substrate for the extraction of directional information from a visual scene. Here we combine two-photon calcium imaging and optogenetics in tethered flying flies with circuit modelling, and show how the correlated activity of compass and visual neurons drives plasticity, which flexibly transforms two-dimensional visual cues into a stable heading representation. We also describe how this plasticity enables the fly to convert a partial heading representation, established from orienting within part of a novel setting, into a complete heading representation. Our results provide mechanistic insight into the memory-related computations that are essential for flexible navigation in varied surroundings.<br><br>Additional materials found in this Collection: https://doi.org/10.25378/janelia.c.4932540<br><br>
DOI: 10.6084/m9.figshare.20469540.v1
title: Data used for the publication "Large contribution of fossil-derived components to aqueous secondary organic aerosols in China "

description: We report new radiocarbon measurements of individual dicarboxylic acids in aerosols collected from a regional receptor site in South China. The compound-specific radiocarbon isotopic evidences show that fossil anthropogenic precursors contribute to the formation of aqueous-phase secondary organic aerosol to a much higher extent than expected. The dataset includes chemical composition and dual-carbon (stable carbon and radiocarbon) isotope composition of aerosols used in the study.
DOI: 10.17632/4drtyfjtfy
title: Multi-class Weather Dataset for Image Classification

description: Multi-class weather dataset(MWD) for image classification is a valuable dataset used in the research paper entitled “Multi-class weather recognition from still image using heterogeneous ensemble method”. The dataset provides a platform for outdoor weather analysis by extracting various features for recognizing different weather conditions.
DOI: 10.17632/5gzyzffcyw
title: Code Availability

description: Code Availability: umap_on_bulk_transcriptomic_analysis and transcriptomic_analysis_DGE_and_GSEA
DOI: 10.6084/m9.figshare.21032644.v1
title: Calculation of global climate mitigation potential

description: under financial and biophysical constraints
DOI: 10.6084/m9.figshare.24514297.v1
title: Nonparametric Statistical Inference via Metric Distribution Function in Metric Spaces

description: The distribution function is essential in statistical inference and connected with samples to form a directed closed loop by the correspondence theorem in measure theory and the Glivenko-Cantelli and Donsker properties. This connection creates a paradigm for statistical inference. However, existing distribution functions are defined in Euclidean spaces and are no longer convenient to use in rapidly evolving data objects of complex nature. It is imperative to develop the concept of the distribution function in a more general space to meet emerging needs. Note that the linearity allows us to use hypercubes to define the distribution function in a Euclidean space. Still, without the linearity in a metric space, we must work with the metric to investigate the probability measure. We introduce a class of metric distribution functions through the metric only. We overcome this challenging step by proving the correspondence theorem and the Glivenko-Cantelli theorem for metric distribution functions in metric spaces, laying the foundation for conducting rational statistical inference for metric space-valued data. Then, we develop a homogeneity test and a mutual independence test for non-Euclidean random objects and present comprehensive empirical evidence to support the performance of our proposed methods.
DOI: 10.6084/m9.figshare.26889334.v1
title: An annotated heterogeneous ultrasound database

description: Ultrasound is a primary diagnostic tool commonly used to evaluate internal body structures, including organs, blood vessels, the musculoskeletal system, and fetal development. Due to challenges such as operator dependence, noise, limited field of view, difficulty in imaging through bone and air, and variability across different systems make diagnosing abnormalities in ultrasound images particularly challenging for less experienced clinicians. The development of artificial intelligence technology could assist in the diagnosis of ultrasound images. However, many databases are created using a single device type and collection site, limiting the generalizability of machine learning classification models. Therefore, we have collected a large, publicly accessible ultrasound challenge database that is intended to significantly enhance the performance of traditional ultrasound image classification. This dataset is derived from publicly available data on the Internet and comprises a total of 1,833 distinct ultrasound data. It includes 13 different ultrasound image anomalies, and all data have been anonymized. Our data-sharing program aims to support benchmark testing of ultrasound image disease diagnosis and classification accuracy in multicenter environments.
DOI: 10.6084/m9.figshare.28326737.v6
title: [WSESE] [Prompt Engineering in Data Analysis] Included and Excluded Papers

description: Context. The use of large language models for qualitative analysis is gaining attention in various fields, including software engineering, where qualitative methods are essential to understanding human and social factors. Goal. This study aimed to investigate how LLMs are currently used in qualitative analysis and how they can be used in software engineering research, focusing on identifying the benefits, limitations, and practices associated with their application. Method. We conducted a systematic mapping study and analyzed 21 relevant studies to explore reports of using LLM for qualitative analysis reported in the literature. Findings. Our findings indicate that LLMs are primarily used for tasks such as coding, thematic analysis, and data categorization, with benefits including increased efficiency and support for new researchers. However, limitations such as output variability, challenges capturing nuanced perspectives, and ethical concerns regarding privacy and transparency were also evident. Discussions. The study highlights the need for structured strategies and guidelines to optimize LLM use in qualitative research within software engineering. Such strategies could enhance the effectiveness of LLMs while addressing ethical considerations. Conclusion. While LLMs show promise for supporting qualitative analysis, human expertise remains essential for data interpretation, and continued exploration of best practices will be crucial for their effective integration into empirical software engineering research.
DOI: 10.6084/m9.figshare.28747190.v1
title: STROBE Checklist

description: This is the STROBE checklist for a publication titled: "Dapagliflozin vs. Empagliflozin for Cardiorenal Risk Reduction: Real-World Paired Data and Comparative Study in Indonesia"
DOI: 10.6084/m9.figshare.20103632.v2
title: News_Data.xlsx

description: Covid-19 and Biodiversity-related news from Digital media in the first stage of the pandemic
DOI: 10.6084/m9.figshare.25546468.v1
title: Youtube dataset1.csv

description: This is a simple sample dataset for individuals to work around with in the process of learning data visualizations.
DOI: 10.6084/m9.figshare.26835760.v1
title: dataset_unonymized.xlsx

description: Dataset