cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3397537.v1
title: BenchmarkDP - Format technology lifecycle analysis - ARCHIVE market segment

description: This set of files contains all the results from the ARCHIVE market segment.<br><br>The fileset contains the following files:<br><br>experimentConfig.tsv - A file containing TAB separated values. This file contains experiment configuration data. <br><br>market.tsv - A file containing TAB separated values. This file contains definition of market elements. <br><br>marketStats.tsv - A file containing TAB separated values. It represents statistics around data preprocessing step which includes mainly conflict reduction. <br><br>cleanedData.tsv - A file containing TAB separated values. This file contains all the data after the UK web archive Format Profile data has been filtered and after all the conflicts have been resolved. <br><br>adoptionRates.tsv - A file containing TAB separated values. This file extends cleanedData.tsv with calculated adoption rates and smoothed adoption rates for each market element. <br><br>market elements.zip - A zip file containing for each market element estimated models for all possible combinations of starting points. Parameter values are stored in allEstimates.tsv and calculated models (R objects) are in models folder. Furthermore, maximum 5 best models are selected (best.tv) and their plots are in graphs folder. <br><br>selected models.zip - A zip file containing plots from selected models. Each market element is represented with the main plot and two plots containg residuals. <br><br>predictions.zip - A zip file containing plots from selected models. In this case prediction interval is plotted instead of the confidence interval. <br>
DOI: 10.6084/m9.figshare.3397528
title: A transfectant RK13 cell line permissive to classical caprine scrapie prion propagation

description: To assess scrapie infectivity associated with caprine-origin tissues, bioassay can be performed using kids, lambs or transgenic mice expressing caprine or ovine prion (<i>PRNP</i>) alleles, but the incubation periods are fairly long. Although several classical ovine scrapie prion permissive cell lines with the ability to detect brain-derived scrapie prion have been available, no classical caprine scrapie permissive cell line is currently available. Therefore, the aims of this study were to generate a rabbit kidney epithelial cell line (RK13) stably expressing caprine wild-type <i>PRNP</i> (cpRK13) and then to assess permissiveness of cpRK13 cells to classical caprine scrapie prion propagation. The cpRK13 and plasmid control RK13 (pcRK13) cells were incubated with brain-derived classical caprine scrapie inocula prepared from goats or ovinized transgenic mice (Tg338, express ovine VRQ allele) infected with caprine scrapie. Significant PrP<sup>Sc</sup> accumulation, which is indicative of scrapie prion propagation, was detected by TSE ELISA and immunohistochemistry in cpRK13 cells inoculated with classical caprine scrapie inocula. Western blot analysis revealed the typical proteinase K-resistant 3 PrP<sup>res</sup> isoforms in the caprine scrapie prion inoculated cpRK13 cell lysate. Importantly, PrP<sup>Sc</sup> accumulation was not detected in similarly inoculated pcRK13 cells, whether by TSE ELISA, immunohistochemistry, or western blot. These findings suggest that caprine scrapie prions can be propagated in cpRK13 cells, thus this cell line may be a useful tool for the assessment of classical caprine prions in the brain tissues of goats.
DOI: 10.6084/m9.figshare.3397528.v1
title: A transfectant RK13 cell line permissive to classical caprine scrapie prion propagation

description: To assess scrapie infectivity associated with caprine-origin tissues, bioassay can be performed using kids, lambs or transgenic mice expressing caprine or ovine prion (<i>PRNP</i>) alleles, but the incubation periods are fairly long. Although several classical ovine scrapie prion permissive cell lines with the ability to detect brain-derived scrapie prion have been available, no classical caprine scrapie permissive cell line is currently available. Therefore, the aims of this study were to generate a rabbit kidney epithelial cell line (RK13) stably expressing caprine wild-type <i>PRNP</i> (cpRK13) and then to assess permissiveness of cpRK13 cells to classical caprine scrapie prion propagation. The cpRK13 and plasmid control RK13 (pcRK13) cells were incubated with brain-derived classical caprine scrapie inocula prepared from goats or ovinized transgenic mice (Tg338, express ovine VRQ allele) infected with caprine scrapie. Significant PrP<sup>Sc</sup> accumulation, which is indicative of scrapie prion propagation, was detected by TSE ELISA and immunohistochemistry in cpRK13 cells inoculated with classical caprine scrapie inocula. Western blot analysis revealed the typical proteinase K-resistant 3 PrP<sup>res</sup> isoforms in the caprine scrapie prion inoculated cpRK13 cell lysate. Importantly, PrP<sup>Sc</sup> accumulation was not detected in similarly inoculated pcRK13 cells, whether by TSE ELISA, immunohistochemistry, or western blot. These findings suggest that caprine scrapie prions can be propagated in cpRK13 cells, thus this cell line may be a useful tool for the assessment of classical caprine prions in the brain tissues of goats.
DOI: 10.6084/m9.figshare.3395983
title: Analysis of ice hockey player's height dynamics: IIHF world championships 2001-2016

description: This is an R script that reproduces the analysis of ice hockey player's height dynamics based on the collected open data from IIHF world championships 2001-2016.<br>
DOI: 10.7910/dvn/7wzxzk/q4vlb0
title: Screening_snapshot.tab

description: :unav
DOI: 10.7910/dvn/7wzxzk/s3lv5f
title: Screening_snapshot.xlsx

description: :unav
DOI: 10.6084/m9.figshare.3395956
title: Communication Volumes in Social Relationships in Online Communication Systems

description: These files contain the sending messages behavior.The columns of the files show row numbers, message sender's user id (uid1), message recipient's user id (uid2), the number of characters (cv), and date index (i).Each row shows each day data of the combination of uid1 and uid2.uid1 was determined based on the different rules of uid2.<br>Please cite the following paper when using the dataset. - Takano M and Fukuda I (2017) Limitations of time resources in human relationships determine social structures. <i>Palgrave Communications</i>. 3:17014 doi: 10.1057/palcomms.2017.14.<br>
DOI: 10.6084/m9.figshare.3395956.v1
title: sg.zip

description: These files contain the sending messages behavior.The columns of the files show row numbers, message sender's user id (uid1), message recipient's user id (uid2), the number of characters (cv), and date index (i).Each row shows each day data of the combination of uid1 and uid2.uid1 was determined based on the different rules of uid2.<br>Please cite the following paper when using the dataset. Masanori Takano, Ichiro Fukuda, "The critical effect of social grooming costs on structures of social relationships", arXiv:1605.07305, 2016. URL: https://arxiv.org/abs/1605.07305
DOI: 10.6084/m9.figshare.3395956.v3
title: Communication Volumes in Social Relationships in Online Communication Systems

description: These files contain the sending messages behavior.The columns of the files show row numbers, message sender's user id (uid1), message recipient's user id (uid2), the number of characters (cv), and date index (i).Each row shows each day data of the combination of uid1 and uid2.uid1 was determined based on the different rules of uid2.<br>Please cite the following paper when using the dataset. - Takano M and Fukuda I (2017) Limitations of time resources in human relationships determine social structures. <i>Palgrave Communications</i>. 3:17014 doi: 10.1057/palcomms.2017.14.<br>
DOI: 10.6084/m9.figshare.3395956.v2
title: Communication Volumes of Social Relationships in Online Communication

description: These files contain the sending messages behavior.The columns of the files show row numbers, message sender's user id (uid1), message recipient's user id (uid2), the number of characters (cv), and date index (i).Each row shows each day data of the combination of uid1 and uid2.uid1 was determined based on the different rules of uid2.<br>Please cite the following paper when using the dataset. Masanori Takano, Ichiro Fukuda, "The critical effect of social grooming costs on structures of social relationships", arXiv:1605.07305, 2016. URL: https://arxiv.org/abs/1605.07305
DOI: 10.6084/m9.figshare.3395950
title: The gene expression profile of mice feeding the resveratrol-enriched rice DJ526

description: The blood assay measurements raw data by effect of RS, DJ, and DJ526 (Additional data file), unprocessed behavioral raw data by effect of RS, DJ, and DJ526 (Additional data file), the measurement-level qRT-PCR raw data in the livers of mice on RS, DJ and DJ526 towards those on Ctrl groups (Additional data file), Globally normalized data (Fold change raw data file), Z transformed data (Z-ratio raw data file), and GSEA results (GSEA results data file)
DOI: 10.6084/m9.figshare.3395950.v1
title: The gene expression profile of mice feeding the resveratrol-enriched rice DJ526

description: The blood assay measurements raw data by effect of RS, DJ, and DJ526 (Additional data file), unprocessed behavioral raw data by effect of RS, DJ, and DJ526 (Additional data file), the measurement-level qRT-PCR raw data in the livers of mice on RS, DJ and DJ526 towards those on Ctrl groups (Additional data file), Globally normalized data (Fold change raw data file), Z transformed data (Z-ratio raw data file), and GSEA results (GSEA results data file)
DOI: 10.6084/m9.figshare.3395887
title: Carbon uptake and organic acid quantification data

description: Datasets of CO<sub>2</sub> uptake and organic acid quantification in <i>Sedum</i> species (Crassulaceae) grown in a green roof of Mexico City. <br>Datos de captura de CO<sub>2</sub> y cuantificación de ácidos orgánicos en especies de Sedum (Crassulaceae), cultivadas en una azotea verde de la Ciudad de México.
DOI: 10.6084/m9.figshare.3395887.v1
title: Carbon uptake and organic acid quantification data

description: Datasets of CO<sub>2</sub> uptake and organic acid quantification in <i>Sedum</i> species (Crassulaceae) grown in a green roof of Mexico City. <br>Datos de captura de CO<sub>2</sub> y cuantificación de ácidos orgánicos en especies de Sedum (Crassulaceae), cultivadas en una azotea verde de la Ciudad de México.
DOI: 10.6084/m9.figshare.3395881
title: Compressed Version of Nipype Tutorial Data

description: Compressed (bz2) version
DOI: 10.6084/m9.figshare.3395881.v2
title: Compressed Version of Nipype Tutorial Data

description: Compressed (bz2) version
DOI: 10.6084/m9.figshare.3395881.v1
title: Compressed Version

description: Compressed (bz2) version
DOI: 10.6084/m9.figshare.3395851
title: WinRoot

description: WinRoot is a user friendly GUI (Graphical User Interface) program (developed in C programming language with the aid of the Windows API - Application Programming Interface), which makes it possible to open an image file (scan) of a root, implement segmentation and skeletonization of the image, and then perform counting of intersections of the root with the grid of chosen dimensions, for different grid positions (angle and offset). Finally, the program implements the Laplace approximation to estimate the root length (see accompanying preprint Stosic, B., "Monte Carlo estimate of error of the line intersect method", submitted to Journal of Ecology, 2016.), and then mean diameter and volume. The results of multiple Monte Carlo runs are stored into an ASCII file for posterior analysis.<br>
DOI: 10.6084/m9.figshare.3395806
title: Uncompressed Version Of Nipype Tutorial Data

description: dataset for nipype tutorials at http://nipy.org/nipype/users/pipeline_tutorial.html
DOI: 10.6084/m9.figshare.3395806.v1
title: nipype tutorial data

description: dataset for nipype tutorials at http://nipy.org/nipype/users/pipeline_tutorial.html
DOI: 10.6084/m9.figshare.3395806.v2
title: Uncompressed version

description: dataset for nipype tutorials at http://nipy.org/nipype/users/pipeline_tutorial.html
DOI: 10.6084/m9.figshare.3395740
title: Consumer exposures to anthocyanins from colour additives, colouring foodstuffs and from natural occurrence in foods

description: Anthocyanins are responsible for the red/blue colour of grapes, currants, and other fruits and vegetables. They may also be extracted for use as colour additives (E163) or concentrated for use as colouring foods. Consumer exposures have been assessed using data on natural occurrence, use levels and frequencies from food manufacturers and European food consumption data. Intakes from natural occurrence can be up to 4 mg kg bw<sup>−1</sup> day<sup>−1</sup> at the mean and up to 17 mg kg bw<sup>−1</sup> day<sup>−1</sup> for children who are high level consumers of red/black berries and small fruits. High-level intakes for children from food colour and colouring food applications lie in the range 0.3–6.3 mg kg bw<sup>−1</sup> day<sup>−1</sup> and for adults at 0.6–2.8 mg kg bw<sup>−1</sup> day<sup>−1</sup>. Exposures from food colour use and colouring foods separately or combined are therefore lower than those from natural occurrence in foods.
DOI: 10.6084/m9.figshare.3395740.v1
title: Consumer exposures to anthocyanins from colour additives, colouring foodstuffs and from natural occurrence in foods

description: Anthocyanins are responsible for the red/blue colour of grapes, currants, and other fruits and vegetables. They may also be extracted for use as colour additives (E163) or concentrated for use as colouring foods. Consumer exposures have been assessed using data on natural occurrence, use levels and frequencies from food manufacturers and European food consumption data. Intakes from natural occurrence can be up to 4 mg kg bw<sup>−1</sup> day<sup>−1</sup> at the mean and up to 17 mg kg bw<sup>−1</sup> day<sup>−1</sup> for children who are high level consumers of red/black berries and small fruits. High-level intakes for children from food colour and colouring food applications lie in the range 0.3–6.3 mg kg bw<sup>−1</sup> day<sup>−1</sup> and for adults at 0.6–2.8 mg kg bw<sup>−1</sup> day<sup>−1</sup>. Exposures from food colour use and colouring foods separately or combined are therefore lower than those from natural occurrence in foods.
DOI: 10.6084/m9.figshare.3395716
title: Assessing Risk of Bias Assessments in Meta-Analyses and Systematic Reviews from Top Neurosurgery Journals Data-Set

description: Full data-set to accompany publication,<i>Assessing Risk of Bias Assessments in Meta-Analyses and Systematic Reviews from Top Neurosurgery Journals</i><b></b>
DOI: 10.6084/m9.figshare.3395716.v2
title: Assessing Risk of Bias Assessments in Meta-Analyses and Systematic Reviews from Top Neurosurgery Journals Data-Set

description: Full data-set to accompany publication,<i>Assessing Risk of Bias Assessments in Meta-Analyses and Systematic Reviews from Top Neurosurgery Journals</i><b></b>
DOI: 10.6084/m9.figshare.3395716.v1
title: Full Data-Set

description: Full data-set to accompany publication,<i>Assessing Risk of Bias Assessments in Meta-Analyses and Systematic Reviews from Top Neurosurgery Journals</i><b></b>
DOI: 10.6084/m9.figshare.3395704
title: IVIM dataset

description: IVIM.nii.gz is an acquired IVIM dataset with 21 b-values acquired in 3 directions, registered to each other and the directions were averaged into one. So this dataset is 4D where the 4th dimension is the b-values.<br><br>IVIM.bvecs are the b-vectors, which are just the 3 directions averaged.<br><br>IVIM.bvals are the 21 b-values of the acquisition.<br><br>fit.nii.gz is 4D with the 4th dimension as each of the fitted values S0, f, D, D*.<br>
DOI: 10.6084/m9.figshare.3395701
title: GEHM 16S rRNA Gene Sequences

description: Sequence files for all samples included in the Gut Microbiota Associated with Infant Weight-for-Length in a Longitudinal Cohort of Healthy, Breastfed Infants manuscript
DOI: 10.6084/m9.figshare.3395701.v1
title: GEHM 16S rRNA Gene Sequences

description: Sequence files for all samples included in the Gut Microbiota Associated with Infant Weight-for-Length in a Longitudinal Cohort of Healthy, Breastfed Infants manuscript
DOI: 10.6084/m9.figshare.3395338
title: Schwacha - Dermal gd T-cell cytokines and FACs.xlsx

description: Dataset for Plos One submission: Dermal γδ T-Cells Can Be Activated by Mitochondrial Damage-Associated Molecular Patterns<br>
DOI: 10.6084/m9.figshare.3395293
title: BenchmarkDP - Format technology lifecycle analysis - Input data

description: These files are input for the analysis workflow published here : https://github.com/datascience/FormatAnalysis<br><br>Additionally there is a xlsx file (Format markets.xlsx) which contains the same data but in a more appropriate form for human use. This file is not processed by the workflow.<br>
DOI: 10.6084/m9.figshare.3395293.v2
title: BenchmarkDP - Format technology lifecycle analysis - Input data

description: These files are input for the analysis workflow published here : https://github.com/datascience/FormatAnalysis<br><br>Additionally there is a xlsx file (Format markets.xlsx) which contains the same data but in a more appropriate form for human use. This file is not processed by the workflow.<br>
DOI: 10.6084/m9.figshare.3395293.v1
title: BenchmarkDP - Format technology lifecycle analysis - Input data

description: These files are input for the analysis workflow published here : https://github.com/datascience/FormatAnalysis<br><br>
DOI: 10.6084/m9.figshare.3395113
title: Attitude to Mental Illness pre-post study / Short intervention program for French Health Professionals

description: This dataset comprises all phases of a pre- post study about Attitudes to Mental Illness (using a French version of the AMI scale), including time 0 and time 1 together in a first file for general purposes, and a comparison of time 0 and time 1 in the second file.
DOI: 10.6084/m9.figshare.3395002
title: The electrically conductive pili of Geobacter Species are a recently evolved feature for extracellular electron transfer

description: Supplementary figures and tables S1-S4 as published in <i>Microbial Genomics</i> in the following article: 'The electrically conductive pili of Geobacter Species are a recently evolved feature for extracellular electron transfer' [DOI: 10.1099/mgen.0.000072]
DOI: 10.6084/m9.figshare.3395113.v1
title: Attitude to Mental Illness pre-post study / Short intervention program for French Health Professionals

description: This dataset comprises all phases of a pre- post study about Attitudes to Mental Illness (using a French version of the AMI scale), including time 0 and time 1 together in a first file for general purposes, and a comparison of time 0 and time 1 in the second file.
DOI: 10.6084/m9.figshare.3395002.v1
title: The electrically conductive pili of Geobacter Species are a recently evolved feature for extracellular electron transfer

description: Supplementary figures and tables S1-S4 as published in <i>Microbial Genomics</i> in the following article: 'The electrically conductive pili of Geobacter Species are a recently evolved feature for extracellular electron transfer' [DOI: 10.1099/mgen.0.000072]
DOI: 10.6084/m9.figshare.3394990.v2
title: Microstructure informed tractography: pitfalls and open challenges

description: One of the major limitations of diffusion MRI tractography is that the fiber tracts recovered by existing algorithms are not truly quantitative. Local techniques for estimating more quantitative features of the tissue microstructure exist, but their combination with tractography has always been considered intractable. Recent advances in local and global modeling made it possible to fill this gap and a number of promising techniques for microstructure informed tractography have been suggested, opening new and exciting perspectives for the quantification of brain connectivity. The ease-of-use of the proposed solutions made it very attractive for researchers to include such advanced methods in their analyses; however, this apparent simplicity should not hide some critical open questions raised by the complexity of these very high-dimensional problems, otherwise some fundamental issues may be pushed into the background. The aim of this article is to raise awareness in the diffusion MRI community, notably researchers working on brain connectivity, about some potential pitfalls and modeling choices that make the interpretation of the outcomes from these novel techniques rather cumbersome. Through a series of experiments on synthetic and real data, we illustrate practical situations where erroneous and severely biased conclusions may be drawn about the connectivity if these pitfalls are overlooked, like the presence of partial/missing/duplicate fibers or the critical importance of the diffusion model adopted. Microstructure informed tractography is a young but very promising technology, and by acknowledging its current limitations as done in this paper, we hope our observations will trigger further research in this direction and new ideas for truly quantitative and biologically meaningful analyses of the connectivity.
DOI: 10.6084/m9.figshare.3394951
title: Nature Reproducibility survey

description: Raw data from survey on reproducibility survey run by Nature Publishing Group November 2015, published in Nature June 2016
DOI: 10.6084/m9.figshare.3394942
title: Dynamic approach to linear statistical calibration with an application in microwave radiometry

description: The problem of statistical calibration of a measuring instrument can be framed both in a statistical context as well as in an engineering context. In the first, the problem is dealt with by distinguishing between the ‘classical’ approach and the ‘inverse’ regression approach. Both of these models are static models and are used to estimate exact measurements from measurements that are affected by error. In the engineering context, the variables of interest are considered to be taken at the time at which you observe it. The Bayesian time series analysis method of Dynamic Linear Models can be used to monitor the evolution of the measures, thus introducing a <i>dynamic</i> approach to statistical calibration. The research presented employs a new approach to performing statistical calibration. A simulation study in the context of microwave radiometry is conducted that compares the dynamic model to traditional static frequentist and Bayesian approaches. The focus of the study is to understand how well the <i>dynamic statistical calibration</i> method performs under various signal-to-noise ratios, <i>r</i>.
DOI: 10.6084/m9.figshare.3394942.v1
title: Dynamic approach to linear statistical calibration with an application in microwave radiometry

description: The problem of statistical calibration of a measuring instrument can be framed both in a statistical context as well as in an engineering context. In the first, the problem is dealt with by distinguishing between the ‘classical’ approach and the ‘inverse’ regression approach. Both of these models are static models and are used to estimate exact measurements from measurements that are affected by error. In the engineering context, the variables of interest are considered to be taken at the time at which you observe it. The Bayesian time series analysis method of Dynamic Linear Models can be used to monitor the evolution of the measures, thus introducing a <i>dynamic</i> approach to statistical calibration. The research presented employs a new approach to performing statistical calibration. A simulation study in the context of microwave radiometry is conducted that compares the dynamic model to traditional static frequentist and Bayesian approaches. The focus of the study is to understand how well the <i>dynamic statistical calibration</i> method performs under various signal-to-noise ratios, <i>r</i>.