cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/l1g-psj-hxm
title: Astrea Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1xj-86y-436
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dm1-rck-w65
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5ag-p9w-0l9
title: †Ammonoidea

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j5m-sqb-epg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5mv-vlc-cth
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8er-07s-75a
title: †Belemnitida

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gby-mla-rn5
title: †Belemnitida

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f1n-81p-qmt
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xmm-0t0-893
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nvg-02t-4e9
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3m9-bjm-zk3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wfx-nyd-rer
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/532-bce-7ls
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/shl-z5c-h5k
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/63r-ym4-swt
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bq4-exx-7ls
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6m4-1bp-mxq
title: †Favorites Tschigova, 1977

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y3c-526-x6j
title: Pseudononion japonicum Asano, 1936

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0kg-y2b-yls
title: Hibolithes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c9m-92a-ad0
title: Terebratula Müller, 1776

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dlj-zq8-pk9
title: Hibolithes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l37-nys-9y0
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x4p-e5h-p84
title: Belemnites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kzx-f20-hhm
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n36-40v-hcs
title: Bison C. H. Smith, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tp3-bfm-nvc
title: Canis lupus familiaris Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t0h-3rl-8e1
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.rrjyd6
title: Occurrence Download

description: A dataset containing 7051 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Kalanchoe pinnata (Lam.) Pers."
 ]
}

 The dataset includes 7051 records from 293 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007441-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6at4td
title: Occurrence Download

description: A dataset containing 4809 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pachypodium Lindl."
 ]
}

 The dataset includes 4809 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007442-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4fyq6
title: Occurrence Download

description: A dataset containing 1488 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((126.51945 2.21501,123.24865 -3.22554,129.72549 -6.91734,133.22298 -6.88495,133.35252 -5.03905,131.40947 -4.1323,130.85894 -1.89779,129.69311 -0.66719,128.55966 3.47799,126.51945 2.21501))",
 "TaxonKey is Magnoliales"
 ]
}

 The dataset includes 1488 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007443-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nx3s7t
title: Occurrence Download

description: A dataset containing 184578 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Austria",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Squamata, Testudines, Amphibia)"
 ]
}

 The dataset includes 184578 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007425-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60612/datadk/unians
title: Supporting Data for: Seminal fluid enhances sperm viability in the leafcutter ant Atta colombica

description: The seminal fluid that accompanies sperm in ejaculates has been shown or suggested to affect sperm competition and paternity success of insects by preventing female remating, inducing oviposition, and forming mating plugs. In Atta leafcutter ants, queens have multiple mates but never remate later in life, although they may live and
produce fertilized eggs for several decades. The mating biology and life history of these ants therefore suggests that the major function of seminal fluid is to maximize sperm viability during copulation, sperm transfer, and initial sperm storage. We tested this hypothesis by comparing the viability of testis sperm and ejaculated sperm (mixed with seminal fluid) and found a significant positive effect of seminal fluid on sperm viability. We further quantified this positive effect by adding accessory gland secretion (a major component of seminal fluid) in a dilution series, to show that minute quantities of accessory gland secretion achieve significant increases in sperm viability. Sperm stored by queens for 1 year benefited in a similar way from being exposed to accessory gland compounds after dissection in control saline solution. Our results provide the first empirical evidence that seminal fluid is important for the production of viable ejaculates and that the accessory glands of Atta males -despite their small size-are functional and produce a very potent secretion.
description: Paper published in Behavioural Ecology and Sociobiology back in 2008, without associated data. Associated data uploaded to Dataverse in 2024.
DOI: 10.60612/datadk/unians/9ukjb8
title: 2007-SpermViabilityAtta-Concentration0vs1Q-SdB.xlsx

description: Data in this file show sperm viability in response to various dilutions of male accessory gland fluid in sperm dissected from queens' spermatheca in newly founded queens vs. 1 year old queens.
DOI: 10.60612/datadk/unians/fmqvz6
title: 2006-SpermViabilityAtta-ConcentrationAGvsSP-SdB.xlsx

description: Data in this file show sperm viability in response to various dilutions of male accessory gland fluid in sperm dissected from the male AT vs. the queens' sperm storage organ the spermatheca.
DOI: 10.60612/datadk/unians/neudah
title: 2006-SpermViabilityAtta-ATvsEJ-SdB.xlsx

description: Data in this file show sperm viability in samples collected from ejaculates of males vs. samples directly dissected from the sperm holding organ of males, the accessory testes (AT).
DOI: 10.60612/datadk/unians/vsixd5
title: Susanne den Boer__Seminal fluid enhances sperm viability Atta_Readme.txt

description: ReadMe file explaining the files in this data set.
DOI: 10.15468/dl.p2zgry
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apteranthes J.C.Mikan"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007444-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28899884
title: <b>All the relevant structure, topology, and trajectory files used in your simulations; the simulation results for all replicates; and the initial and final structures in PDB format</b>.

description: All the relevant structure, topology, and trajectory files used in your simulations; the simulation results for all replicates; and the initial and final structures in PDB format.
DOI: 10.15468/dl.jzj7fz
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boucerosia Wight & Arn."
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007446-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57703/ce-6ad59
title: Topography Challenge: Sample T25

description: Topography Challenge Sample T25
DOI: 10.15468/dl.3xr48h
title: Occurrence Download

description: A dataset containing 8974 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Clitoria ternatea L."
 ]
}

 The dataset includes 8974 records from 232 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007447-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28902614
title: Supplementary data for manuscript submitted to Virulence on MafA 2/3 adhesin of Neisseria gonorrhoeae

description: Supplementary data for manuscript submission to Virulence
DOI: 10.15468/dl.4xyj5z
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((77.12952 -12.14214,147.87048 -12.14214,147.87048 16.14214,77.12952 16.14214,77.12952 -12.14214))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Spatholobus littoralis Hassk."
 ]
}

 The dataset includes 34 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007448-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hppawa
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caudanthera Plowes"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007449-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vxe53t
title: Occurrence Download

description: A dataset containing 195 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hippophae tibetana Schltdl."
 ]
}

 The dataset includes 195 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007450-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12789468
title: Data and code for TARDBP exitron splicing paper

description: Takuma Yamagishi1), Shingo Koide1), Genri Toyama1), Aya Washida1), Yumi Yamada1), Ryutaro Hanyu1), Nadbitova Ekaterina1), Yuka Mitsuhashi Koike2), Takuya Konno1), Tomohiko Ishihara1), Taisuke Kato2), Osamu Onodera1) 2), Akihiro Sugai1)

1)Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan.

2)Department of Molecular Neuroscience, Resource Branch for Brain Disease Research, Brain Research Institute, Niigata University, Niigata, Japan. 

 

This repository contains data, analysis code, supplementary materials, and original uncropped blot images for the paper "ASO-enhancement of TARDBP exitron splicing mitigates TDP-43 proteinopathies".

Contents:



Data:



Raw data files used in the analyses (CSV format)

All data is contained in a single file named 'data.zip'

The ZIP file structure:



Separate folders for Figure 1 to Figure 5, and Extended Data Fig. 1 to Extended Data Fig. 9

Each folder contains the corresponding CSV files used for that specific figure



Processed data files directly used in figure generation (Excel format)



Analysis Code:



R Markdown (Rmd) files containing the complete analysis pipeline

These files include code for data processing, statistical analyses, and figure generation

Each section in the Rmd files corresponds to a specific figure in the main manuscript



Output:



PDF files generated from knitting the Rmd documents

These PDFs provide a readable format of the code along with its output



Original Blot Images:



Uncropped, full-length images of all blots used in the study

These images are provided to ensure full transparency and to allow for independent verification of our results




The R Markdown documents are organized by figure numbers as they appear in the main manuscript. They contain detailed R code that reproduces all analyses and generates the figures presented in the paper. The code utilizes various R packages for data manipulation, statistical analysis, and visualization.

To use this code:



Ensure all necessary R packages are installed

Verify that the data files are in the correct directory structure as indicated in the code

Run the R Markdown documents in the order presented


The inclusion of original, uncropped blot images allows for a complete assessment of the experimental data. These images are provided in their raw format, as captured by the imaging equipment, without any post-processing or cropping.

Note that while these materials allow for the reproduction of our analyses, readers should refer to the main manuscript for comprehensive interpretation of the results and their biological significance.

We encourage other researchers to use these resources for verification of our results or as a starting point for further investigations in the field of TDP-43 proteinopathies and TARDBP exitron splicing.

For any questions or issues regarding this data, code, or original images, please contact the corresponding author.

This work is licensed under CC BY 4.0. When using this data/code, please cite our paper.
DOI: 10.5281/zenodo.13894869
title: Data and code for TARDBP exitron splicing paper

description: Takuma Yamagishi1), Shingo Koide1), Genri Toyama1), Aya Washida1), Yumi Yamada1), Ryutaro Hanyu1), Ekaterina Nadbitova1), Yuka Mitsuhashi Koike2), Takuya Konno1), Tomohiko Ishihara1), Taisuke Kato2), Osamu Onodera1) 2), Akihiro Sugai1)

1)Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan.

2)Department of Molecular Neuroscience, Resource Branch for Brain Disease Research, Brain Research Institute, Niigata University, Niigata, Japan. 

 

This repository contains data, analysis code, supplementary materials, and original uncropped blot images for the paper "Exitron splicing breaks TDP-43 aggregation-dysfunction spiral in ALS and FTLD".

Contents:



Data:



Raw data files used in the analyses (CSV format)

All data is contained in a single file named 'data.zip'

The ZIP file structure:



Separate folders for Figure 1 to Figure 5, and Supplementary Figure S1 to Supplementary Figure S9

Each folder contains the corresponding CSV files used for that specific figure



Processed data files directly used in figure generation (Excel format)



Analysis Code:



R Markdown (Rmd) files containing the complete analysis pipeline

These files include code for data processing, statistical analyses, and figure generation

Each section in the Rmd files corresponds to a specific figure in the main manuscript



Output:



PDF files generated from knitting the Rmd documents

These PDFs provide a readable format of the code along with its output



Original Blot Images:



Uncropped, full-length images of all blots used in the study

These images are provided to ensure full transparency and to allow for independent verification of our results




The R Markdown documents are organized by figure numbers as they appear in the main manuscript. They contain detailed R code that reproduces all analyses and generates the figures presented in the paper. The code utilizes various R packages for data manipulation, statistical analysis, and visualization.

To use this code:



Ensure all necessary R packages are installed

Verify that the data files are in the correct directory structure as indicated in the code

Run the R Markdown documents in the order presented


The inclusion of original, uncropped blot images allows for a complete assessment of the experimental data. These images are provided in their raw format, as captured by the imaging equipment, without any post-processing or cropping.

Note that while these materials allow for the reproduction of our analyses, readers should refer to the main manuscript for comprehensive interpretation of the results and their biological significance.

We encourage other researchers to use these resources for verification of our results or as a starting point for further investigations in the field of TDP-43 proteinopathies and TARDBP exitron splicing.

For any questions or issues regarding this data, code, or original images, please contact the corresponding author.

This work is licensed under CC BY 4.0. When using this data/code, please cite our paper.
DOI: 10.5281/zenodo.15308497
title: Board Design Patterns: Research Artifact
DOI: 10.5281/zenodo.15308498
title: Board Design Patterns: Research Artifact
DOI: 10.5281/zenodo.11484658
title: Electrochmically-assisted aqueous reduction of gold on carboized lignin nanofiber electrodes

description: This dataset contains data to the linked publication: https://doi.org/10.1002/admi.202400748

The data includes:



Electrochemical data (file types: txt, xlsx)

Raman data (file types: txt)

SEM images (file types: tif, png)

EDS data (file types: png, docx)

XPS data (file types: txt)

Gas chromatograph data (file types: dat, xlsx)

Photographs (file types: jpg)

Documentation (txt, pdf)


The full list of experimental details can be found in the linked publication. The structure of the directory and the file types are explained within readme files in the dataset.
DOI: 10.5281/zenodo.11484660
title: Electrochmically-assisted aqueous reduction of gold on carboized lignin nanofiber electrodes

description: This dataset contains data to the linked publication: https://doi.org/10.1002/admi.202400748

The data includes:



Electrochemical data (file types: txt, xlsx)

Raman data (file types: txt)

SEM images (file types: tif, png)

EDS data (file types: png, docx)

XPS data (file types: txt)

Gas chromatograph data (file types: dat, xlsx)

Photographs (file types: jpg)

Documentation (txt, pdf)


The full list of experimental details can be found in the linked publication. The structure of the directory and the file types are explained within readme files in the dataset.
DOI: 10.48804/1pzz18
title: Interviewer questions in political interviews with politicians and experts in Terzake

description: The materials in this dataset consist of 307 ‘question turns’, i.e., turns taken by interviewers to ask interviewees a question or confront them with a statement. The question turns were taken from interviews in Terzake, a Flemish current-affairs programme that specialises in interviews with politicians and experts. 
The interviews selected for the study for which the dataset was compiled centre on two topics: the 2019-2020 Belgian federal government formation and the Covid-19 pandemic in the context of Belgium. The data were extracted and transcribed manually from the videos posted on the VRT website. 
For ‘formation’ interviews, 150 question turns were gathered spanning the period from election day on 26 May 2019 until the inauguration of the new government on 1 October 2020. The data extraction has a balanced distribution of interviews with leftist, centrist and rightist politicians. 
For the ‘Covid’ interviews, the 157 selected question turns date from the period between the announcement of the first strict ‘Covid’ measures on 13 March 2020 until the announcement of the first (cautious) relaxations of the measures on 15 April 2020. For the 'Covid' data, a distinction was made between interviews with politicians and experts. Though we aimed at an equal distribution of politician-directed and expert-directed question turns, interviews with experts were more frequent. The resulting ‘Covid’ dataset consists of 74 politician-directed and 83 expert-directed question turns.
DOI: 10.15468/dl.3w2qvs
title: Occurrence Download

description: A dataset containing 38551 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceropegia L."
 ]
}

 The dataset includes 38551 records from 398 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007451-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.