cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.5kze8t
title: Occurrence Download

description: A dataset containing 413 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is LACM Vertebrate Collection",
 "TaxonKey is Electrona antarctica (Günther, 1878)"
 ]
}

 The dataset includes 413 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158919-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dazqap
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyphostemma flavicans (Baker) Desc."
 ]
}

 The dataset includes 267 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158931-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uiztdx
title: Occurrence Download

description: A dataset containing 276 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Haliotis fulgens R.A.Philippi, 1845"
 ]
}

 The dataset includes 276 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005284-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bnmfc0
title: Occurrence Download

description: A dataset containing 154317 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parus montanus Conrad von Baldenstein, 1827",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 154317 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005284-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.npukmk
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyphostemma flaviflorum (Sprague) Desc."
 ]
}

 The dataset includes 20 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158934-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w75uar
title: Occurrence Download

description: A dataset containing 2244390 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Malaysia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2244390 records from 842 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158918-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26650806
title: Additional file 6 of GCLiPP: global crosslinking and protein purification method for constructing high-resolution occupancy maps for RNA binding proteins

description: Additional file 6:Table S6. Probable causal disease-associated SNPs identified by PICS2 that occur within GCLiPP-called RBP binding peaks.
DOI: 10.6084/m9.figshare.26650806.v1
title: Additional file 6 of GCLiPP: global crosslinking and protein purification method for constructing high-resolution occupancy maps for RNA binding proteins

description: Additional file 6:Table S6. Probable causal disease-associated SNPs identified by PICS2 that occur within GCLiPP-called RBP binding peaks.
DOI: 10.6084/m9.figshare.26650809
title: Additional file 7 of GCLiPP: global crosslinking and protein purification method for constructing high-resolution occupancy maps for RNA binding proteins

description: Additional file 7:Table S7. List of RBP eCLIP datasets.
DOI: 10.6084/m9.figshare.26650809.v1
title: Additional file 7 of GCLiPP: global crosslinking and protein purification method for constructing high-resolution occupancy maps for RNA binding proteins

description: Additional file 7:Table S7. List of RBP eCLIP datasets.
DOI: 10.15468/dl.6mewup
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.126336 -32.306351, 149.126336 -32.308596, 149.128582 -32.308596, 149.128582 -32.315334, 149.133073 -32.315334, 149.133073 -32.319825, 149.135319 -32.319825, 149.135319 -32.326563, 149.144302 -32.326563, 149.144302 -32.322071, 149.15104 -32.322071, 149.15104 -32.326563, 149.155531 -32.326563, 149.155531 -32.322071, 149.157777 -32.322071, 149.157777 -32.319825, 149.155531 -32.319825, 149.155531 -32.315334, 149.15104 -32.315334, 149.15104 -32.306351, 149.148794 -32.306351, 149.148794 -32.313088, 149.144302 -32.313088, 149.144302 -32.308596, 149.142057 -32.308596, 149.142057 -32.313088, 149.139811 -32.313088, 149.139811 -32.308596, 149.135319 -32.308596, 149.135319 -32.306351, 149.126336 -32.306351), (149.15104 -32.315334, 149.15104 -32.319825, 149.142057 -32.319825, 149.142057 -32.315334, 149.15104 -32.315334), (149.133073 -32.315334, 149.133073 -32.313088, 149.135319 -32.313088, 149.135319 -32.315334, 149.133073 -32.315334)), ((149.15104 -32.326563, 149.148794 -32.326563, 149.148794 -32.328809, 149.15104 -32.328809, 149.15104 -32.326563)), ((149.148794 -32.328809, 149.144302 -32.328809, 149.144302 -32.331054, 149.142057 -32.331054, 149.142057 -32.335546, 149.144302 -32.335546, 149.144302 -32.337792, 149.148794 -32.337792, 149.148794 -32.328809)), ((149.157777 -32.322071, 149.157777 -32.326563, 149.162269 -32.326563, 149.162269 -32.322071, 149.157777 -32.322071)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065943-240626123714530/datasets/export for details.
DOI: 10.15468/dl.8c2fya
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((144.288885 -36.694642, 144.288885 -36.699133, 144.295622 -36.699133, 144.295622 -36.694642, 144.288885 -36.694642))"
 ]
}

 The dataset includes 140 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065944-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26591009.v1
title: Additional file 2 of Profiling the immune epigenome across global cattle breeds

description: Additional file 2: Table S1. Reference RRBS mapping summary. Table S2. ATAC-seq mapping summary. Table S3. RNA-seq mapping summary. Table S4. Divergent CpG island GO enrichment. Table S5. Mixture RRBS mapping summary. Table S6. Antibody panels. Table S7. Cell sorting purities. Table S8. Screening of lysed blood. Table S9. RRBS vs WGBS mapping summary.
DOI: 10.6084/m9.figshare.26591012.v1
title: Additional file 3 of Profiling the immune epigenome across global cattle breeds

description: Additional file 3: Table S10. ENA sample accessions of animals used in this study. Table S11. Accessions of WGS data used in PCA. Table S12. Accessions of WGS data used to calculate FST scores.
DOI: 10.6084/m9.figshare.26591009
title: Additional file 2 of Profiling the immune epigenome across global cattle breeds

description: Additional file 2: Table S1. Reference RRBS mapping summary. Table S2. ATAC-seq mapping summary. Table S3. RNA-seq mapping summary. Table S4. Divergent CpG island GO enrichment. Table S5. Mixture RRBS mapping summary. Table S6. Antibody panels. Table S7. Cell sorting purities. Table S8. Screening of lysed blood. Table S9. RRBS vs WGBS mapping summary.
DOI: 10.6084/m9.figshare.26591012
title: Additional file 3 of Profiling the immune epigenome across global cattle breeds

description: Additional file 3: Table S10. ENA sample accessions of animals used in this study. Table S11. Accessions of WGS data used in PCA. Table S12. Accessions of WGS data used to calculate FST scores.
DOI: 10.6084/m9.figshare.26650875
title: Additional file 1 of SINE-derived satellites in scaled reptiles

description: Additional file 1 Multiple alignment of consensus sequences of sSat3 repeat units in snakes. The Squam3 consensus sequence is given above. Subscript indices indicate the following species. Pgu, Pantherophis guttatus; Lco, Laticauda colubrina; Pob, Pantherophis obsoletus; Ael, Arizona elegans; Pte, Pseudonaja textilis; Cho, Crotalus horridus; Cvi, Crotalus viridis viridis; Pfl, Protobothrops flavoviridis; Prm, Protobothrops mucrosquamatus; Vbe, Vipera berus; Pmuc, Ptyas mucosa; Dpu, Diadophis punctatus; Tel, Thamnophis elegans; Tsi, Thamnophis sirtalis; Hcy, Hydrophis cyanocinctus; Hha, Hydrophis hardwickii; Hme, Hydrophis melanocephalus; Nna, Naja naja; Oha, Ophiophagus hannah; Mth, Myanophis thanlyinensis; Tba, Thermophis baileyi; Eij, Emydocephalus ijimae; Lla, Laticauda laticaudata; Nsc, Notechis scutatus; Cpy, Crotalus pyrrhus; Bco1 and Bco2, Boa constrictor; and Cbo, Charina bottae. The snake families are colored: Colubridae, yellow; Elapidae, green; Viperidae, blue; Boidae, red; and Homalopsidae, magenta.
DOI: 10.6084/m9.figshare.26650875.v1
title: Additional file 1 of SINE-derived satellites in scaled reptiles

description: Additional file 1 Multiple alignment of consensus sequences of sSat3 repeat units in snakes. The Squam3 consensus sequence is given above. Subscript indices indicate the following species. Pgu, Pantherophis guttatus; Lco, Laticauda colubrina; Pob, Pantherophis obsoletus; Ael, Arizona elegans; Pte, Pseudonaja textilis; Cho, Crotalus horridus; Cvi, Crotalus viridis viridis; Pfl, Protobothrops flavoviridis; Prm, Protobothrops mucrosquamatus; Vbe, Vipera berus; Pmuc, Ptyas mucosa; Dpu, Diadophis punctatus; Tel, Thamnophis elegans; Tsi, Thamnophis sirtalis; Hcy, Hydrophis cyanocinctus; Hha, Hydrophis hardwickii; Hme, Hydrophis melanocephalus; Nna, Naja naja; Oha, Ophiophagus hannah; Mth, Myanophis thanlyinensis; Tba, Thermophis baileyi; Eij, Emydocephalus ijimae; Lla, Laticauda laticaudata; Nsc, Notechis scutatus; Cpy, Crotalus pyrrhus; Bco1 and Bco2, Boa constrictor; and Cbo, Charina bottae. The snake families are colored: Colubridae, yellow; Elapidae, green; Viperidae, blue; Boidae, red; and Homalopsidae, magenta.
DOI: 10.6084/m9.figshare.26650884
title: Additional file 4 of SINE-derived satellites in scaled reptiles

description: Additional file 4. Multiple alignment of consensus sequences of sSat3 in geckos, teiids, and gymnophthalmids. Names on the left indicate corresponding species. Gja, Gekko japonicus; Ppi, Paroedura picta; Ati, Aspidoscelis tigris; Ama, Aspidoscelis marmoratus; Tor, Tretioscincus oriximinensis. Indices after the species code indicate (sub)variants. The lizard families are colored: Gekkota, yellow; Teiidae, green; and Gymnophthalmidae, blue. Squam3 SINE consensus sequence specific for geckos and lacertids is given above.
DOI: 10.6084/m9.figshare.26650884.v1
title: Additional file 4 of SINE-derived satellites in scaled reptiles

description: Additional file 4. Multiple alignment of consensus sequences of sSat3 in geckos, teiids, and gymnophthalmids. Names on the left indicate corresponding species. Gja, Gekko japonicus; Ppi, Paroedura picta; Ati, Aspidoscelis tigris; Ama, Aspidoscelis marmoratus; Tor, Tretioscincus oriximinensis. Indices after the species code indicate (sub)variants. The lizard families are colored: Gekkota, yellow; Teiidae, green; and Gymnophthalmidae, blue. Squam3 SINE consensus sequence specific for geckos and lacertids is given above.
DOI: 10.6084/m9.figshare.26650890
title: Additional file 6 of SINE-derived satellites in scaled reptiles

description: Additional file 6. Multiple alignment of consensus sequences of sSat2 in the Schlegel’s Japanese gecko Gekko japonicus. The gecko-specific Squam2 consensus sequence is given above.
DOI: 10.6084/m9.figshare.26650890.v1
title: Additional file 6 of SINE-derived satellites in scaled reptiles

description: Additional file 6. Multiple alignment of consensus sequences of sSat2 in the Schlegel’s Japanese gecko Gekko japonicus. The gecko-specific Squam2 consensus sequence is given above.
DOI: 10.6084/m9.figshare.26590943
title: Additional file 2 of Genetic Mapping of the Root Mycobiota in Rice and its Role in Drought Tolerance

description: Additional file 2. Supplementary Data File. It contains taxonomic information and abundance of the most abundant sequence-clusters (OTUs) used for the GWAS analysis (n = 80), their RDA scores, SNPs found and candidate genes list. OTU selection: sequence-clusters that occurred at least 25 times with a total number of reads of at least 100. This was done separately for drought and control.
DOI: 10.4121/1255994c-c64f-40f5-8121-9e952e308c9a.v3
title: Large Car-following Dataset Based on Lyft level-5: Following Autonomous Vehicles vs. Human-driven Vehicles

description: Studying how human drivers react differently when following autonomous vehicles (AV) vs. human-driven vehicles (HV) is critical for mixed traffic flow. This dataset contains extracted and enhanced two categories of car-following data, HV-following-AV (H-A) and HV-following-HV (H-H), from the open Lyft level-5 dataset.
DOI: 10.6084/m9.figshare.26590943.v1
title: Additional file 2 of Genetic Mapping of the Root Mycobiota in Rice and its Role in Drought Tolerance

description: Additional file 2. Supplementary Data File. It contains taxonomic information and abundance of the most abundant sequence-clusters (OTUs) used for the GWAS analysis (n = 80), their RDA scores, SNPs found and candidate genes list. OTU selection: sequence-clusters that occurred at least 25 times with a total number of reads of at least 100. This was done separately for drought and control.
DOI: 10.6084/m9.figshare.26650914
title: Additional file 1 of Efficient design of synthetic gene circuits under cell-to-cell variability

description: Additional file 1. SBML model for the WTC This SBML file describes the model used to estimate the WTC’s parameters. The C file used to simulate the model during sampling is provided in the Gitlab repository https://gitlab.com/csb.ethz/slmcmc_applications .
DOI: 10.6084/m9.figshare.26650914.v1
title: Additional file 1 of Efficient design of synthetic gene circuits under cell-to-cell variability

description: Additional file 1. SBML model for the WTC This SBML file describes the model used to estimate the WTC’s parameters. The C file used to simulate the model during sampling is provided in the Gitlab repository https://gitlab.com/csb.ethz/slmcmc_applications .
DOI: 10.15468/dl.fg2yyy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.34867 -32.328809, 149.34867 -32.335546, 149.355408 -32.335546, 149.355408 -32.337792, 149.357653 -32.337792, 149.357653 -32.331054, 149.350916 -32.331054, 149.350916 -32.328809, 149.34867 -32.328809))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065946-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26650932
title: Additional file 1 of Spatial model of Dengue Hemorrhagic Fever (DHF) risk: scoping review

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26650932.v1
title: Additional file 1 of Spatial model of Dengue Hemorrhagic Fever (DHF) risk: scoping review

description: Supplementary Material 1
DOI: 10.4121/8d6ee0b0-8ed5-43f3-b1c9-7665cc163e87
title: A Comparative Conflict Resolution Dataset Derived from Argoverse-2: Scenarios with vs. without Autonomous Vehicles

description: As the deployment of autonomous vehicles (AVs) becomes increasingly prevalent, ensuring safe and smooth interactions between AVs and other human agents is of critical importance. In the urban environment, how vehicles resolve conflicts has significant impacts on both driving safety and traffic efficiency. To expedite the studies on evaluating conflict resolution in AV-involved and AV-free scenarios at unsignalized intersections, this paper presents a high-quality dataset derived from the open Argoverse-2 motion forecasting data. First, scenarios of interest are selected by applying a set of heuristic rules regarding post-encroachment time (PET), minimum distance, trajectory crossing, and speed variation. Next, the quality of the raw data is carefully examined. We found that position and speed data are not consistent in Argoverse-2 data and its improper processing induced unnecessary errors. To address these specific problems, we propose and apply a data processing pipeline to correct and enhance the raw data. As a result, 5k+ AV-involved scenarios and 16k+ AV-free scenarios with smooth and consistent position, speed, acceleration, and heading direction data are obtained. Further assessments show that this dataset comprises diverse and balanced conflict resolution regimes. This informative dataset provides a valuable resource for researchers and practitioners in the field of autonomous vehicle assessment and regulation.
DOI: 10.5281/zenodo.13318864
title: D-PLACE dataset derived from Murdock and White 1969 'Standard Cross-Cultural Sample'

description: Cite the source of the dataset as:




Murdock GP & White DR. 1969. Standard Cross-Cultural Sample. Ethnology. 9:329–369.
DOI: 10.4121/8d6ee0b0-8ed5-43f3-b1c9-7665cc163e87.v2
title: A Comparative Conflict Resolution Dataset Derived from Argoverse-2: Scenarios with vs. without Autonomous Vehicles

description: As the deployment of autonomous vehicles (AVs) becomes increasingly prevalent, ensuring safe and smooth interactions between AVs and other human agents is of critical importance. In the urban environment, how vehicles resolve conflicts has significant impacts on both driving safety and traffic efficiency. To expedite the studies on evaluating conflict resolution in AV-involved and AV-free scenarios at unsignalized intersections, this paper presents a high-quality dataset derived from the open Argoverse-2 motion forecasting data. First, scenarios of interest are selected by applying a set of heuristic rules regarding post-encroachment time (PET), minimum distance, trajectory crossing, and speed variation. Next, the quality of the raw data is carefully examined. We found that position and speed data are not consistent in Argoverse-2 data and its improper processing induced unnecessary errors. To address these specific problems, we propose and apply a data processing pipeline to correct and enhance the raw data. As a result, 5k+ AV-involved scenarios and 16k+ AV-free scenarios with smooth and consistent position, speed, acceleration, and heading direction data are obtained. Further assessments show that this dataset comprises diverse and balanced conflict resolution regimes. This informative dataset provides a valuable resource for researchers and practitioners in the field of autonomous vehicle assessment and regulation.
DOI: 10.15468/dl.g3q77s
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((144.362996 -36.694642, 144.362996 -36.699133, 144.365242 -36.699133, 144.365242 -36.705871, 144.367488 -36.705871, 144.367488 -36.694642, 144.362996 -36.694642))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065947-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/vs7fvr
title: IPSP Dataset of Bacterial Species Collection (IPSP-BAC)

description: The CNR-IPSP-BAC includes about 100 bacterial strains isolated from different host plants from the Mediterranean area, including pathogenic or beneficial plant bacterial species belonging to Agrobacterium, Bacillus, Erwinia and Pseudomonas genera. Preservation techniques - Cryo: bacterial suspensions in water glycerol (30% v/v) stored at- 80 °C in cryovials; Fresh cultures: bacterial suspensions in ultrapure water stored at 4 °C in plastic tubes. Aims: Taxonomical Identification (morphological, biochemical and molecular), isolation, preservation and cultivation of microorganisms.
DOI: 10.6084/m9.figshare.26650959
title: Additional file 1 of Lokatt: a hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network

description: Additional file 1: Table S1. Testing performances on data batch 3, including full sequence accuracy metrics of the benchmarking basecallers; Table S2. Testing performances on homopolymers in data batch 2 and 3; Table S3. Assemblies report on data batch 2, the comprehensive Quast genome assemblies report of all benchmark basecallers.
DOI: 10.6084/m9.figshare.26650959.v1
title: Additional file 1 of Lokatt: a hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network

description: Additional file 1: Table S1. Testing performances on data batch 3, including full sequence accuracy metrics of the benchmarking basecallers; Table S2. Testing performances on homopolymers in data batch 2 and 3; Table S3. Assemblies report on data batch 2, the comprehensive Quast genome assemblies report of all benchmark basecallers.
DOI: 10.5281/zenodo.8247572
title: On the Role of Font Formats in Building Efficient Web Applications - Replication Package

description: Replication Package for the paper - On the Role of Font Formats in Building Efficient Web Applications. It is the final version of the replication package for the PROFES 2023 conference (https://conf.researchr.org/details/profes-2023/profes-2023-papers/18/On-the-Role-of-Font-Formats-in-Building-Efficient-Web-Applications).
DOI: 10.5281/zenodo.8391951
title: On the Role of Font Formats in Building Efficient Web Applications - Replication Package

description: Replication Package for the paper - On the Role of Font Formats in Building Efficient Web Applications. It is the final version of the replication package for the PROFES 2023 conference (https://conf.researchr.org/details/profes-2023/profes-2023-papers/18/On-the-Role-of-Font-Formats-in-Building-Efficient-Web-Applications).
DOI: 10.6084/m9.figshare.26129923.v1
title: Identification and management of interstitial lung disease associated with systemic sclerosis (SSc-ILD), rheumatoid arthritis (RA-ILD), and polymyositis/dermatomyositis (PM/DM-ILD): development of expert consensus-based clinical algorithms

description: Clinical guidance on the identification and management of connective tissue disease-associated interstitial lung disease (CTD-ILD) is needed for optimal clinical practice. We aimed to develop clinical algorithms for identifying and managing three common CTD-ILDs: those associated with systemic sclerosis (SSc-ILD), rheumatoid arthritis (RA-ILD), and polymyositis/dermatomyositis (PM/DM-ILD). Meetings were held October – November 2023 to create consensus-based algorithms for identifying and managing SSc-ILD, RA-ILD, and PM/DM-ILD in clinical practice, based on expert consensus statements for identification and management of CTD-ILD previously derived from a Delphi process. We developed clinical algorithms for SSc-ILD, RA-ILD, and PM/DM-ILD that highlight both commonalities and differences in the identification and management of these CTD-ILDs. Importantly, ILD should be suspected in patients with SSc, RA, or PM/DM who have respiratory symptoms. Chest high-resolution computed tomography has utility for screening, diagnosis and assessment of severity. Furthermore, regular follow-up and multidisciplinary management are important. Disease-specific considerations include unique risk factors such as anti-topoisomerase I antibodies in SSc-ILD, high-titer cyclic citrullinated peptide antibodies in RA, anti-aminoacyl tRNA synthetase antibodies in PM/DM, and anti-melanoma differentiation-associated gene 5 antibody in DM. These algorithms may help physicians to identify and manage patients with SSc-ILD, RA-ILD, or PM/DM-ILD.