cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.towyka
title: Occurrence Download

description: A dataset containing 405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Vigna unguiculata subsp. stenophylla (Harv.) Maréchal, Mascherpa & Stainier",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 405 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017023-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s4af9v
title: Occurrence Download

description: A dataset containing 632 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Dyschoriste Nees"
 ]
}

 The dataset includes 632 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011296-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hav6a3
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1960-2018",
 "HasCoordinate is true",
 "TaxonKey is Potentilla bimundorum Soják",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 43 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013081-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jvkgj9
title: Occurrence Download

description: A dataset containing 306189 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Prunella vulgaris L."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 306189 records from 641 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017023-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hobnrx
title: Occurrence Download

description: A dataset containing 549 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-68.0452 -16.25423,-68.15231 -16.38076,-68.02597 -16.45716,-67.93533 -16.36494,-68.0452 -16.25423))",
 "HasCoordinate is true",
 "TaxonKey is Tracheophyta",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 549 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001903-180920211646547/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hyqvck
title: Occurrence Download

description: A dataset containing 631 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is Collection Arachnology SMF"
 ]
}

 The dataset includes 631 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017023-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y9gadq
title: Occurrence Download

description: A dataset containing 36043 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Falcaria vulgaris Bernh."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 36043 records from 179 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013081-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26691169
title: Additional file 10 of Attenuated vaccine PmCQ2Δ4555–4580 effectively protects mice against Pasteurella multocida infection

description: Supplementary Material 10
DOI: 10.6084/m9.figshare.26691169.v1
title: Additional file 10 of Attenuated vaccine PmCQ2Δ4555–4580 effectively protects mice against Pasteurella multocida infection

description: Supplementary Material 10
DOI: 10.6084/m9.figshare.25376157
title: Additional file 2 of Reproducible isolation of bovine mammary macrophages for analysis of host pathogen interactions

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.25376157.v1
title: Additional file 2 of Reproducible isolation of bovine mammary macrophages for analysis of host pathogen interactions

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26691223
title: Additional file 3 of Reproducible isolation of bovine mammary macrophages for analysis of host pathogen interactions

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26691223.v1
title: Additional file 3 of Reproducible isolation of bovine mammary macrophages for analysis of host pathogen interactions

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26691226
title: Additional file 4 of Reproducible isolation of bovine mammary macrophages for analysis of host pathogen interactions

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26691226.v1
title: Additional file 4 of Reproducible isolation of bovine mammary macrophages for analysis of host pathogen interactions

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26691229
title: Additional file 5 of Reproducible isolation of bovine mammary macrophages for analysis of host pathogen interactions

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.26691229.v1
title: Additional file 5 of Reproducible isolation of bovine mammary macrophages for analysis of host pathogen interactions

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.25376166
title: Additional file 2 of Early transcriptional changes of heavy metal resistance and multiple efflux genes in Xanthomonas campestris pv. campestris under copper and heavy metal ion stress

description: Additional file 2: Supplemental Table 1. Read quality and mapping statictics of Illumina reads from copper stress and control treatments involving Xcc BrA1. Supplemental Table 2. qPCR primers and target genes for validation of Transcriptomic results. Supplemental Table 3. qPCR primer gene targets. Targets were identified in Xcc BrA1 from genomes characterised in Ramnarine, Jayaraman and Ramsubhag (2022). Ramnarine, Stephen D. B., Jr., Jayaraj Jayaraman, and Adesh Ramsubhag. 2022. "Comparative genomics of the black rot pathogen Xanthomonas campestris pv. campestris and non-pathogenic co-inhabitant Xanthomonas melonis from Trinidad reveal unique pathogenicity determinants and secretion system profiles." PeerJ 9 (e12632). Supplemental Table 4. Ct values for qPCR experiments on CuSo4.5H2O exposed cells at 15 (C15), 60 (C60) and 240 (C240) mins. Concentrations are given as 0p - 0ppm/0mM, 200p - 200ppm/0.8mM and 300p - 300ppm/ 1.2mM. Supplemental Table 5. Average log2FC values of gene targets under tolerant and resistant copper stress at 15 min, 1 hr and 4hr exposure time points. Supplemental Table 6. Ct values from qPCR experiments where by cells were exposed to different heavy metal concentrations for 1 hr. Supplemental Table 7. Average Log2FC values for MDR efflux pumps and other targets under heavy metal stress at the 1hr exposure. Supplemental Table 8. Upregulated genes (logFC ≥ 1). Supplemental Table 9. Downregulated genes (logFC ≤ 1). Supplemental Table 10. Low expression genes (logFC &lt; 1 or &gt; -1). Supplemental Table 11. Differentially expressed mobile elements, IS and Tn elements at the initial timepoint sampled. Refer to linked multifasta and annotation files to correlate with GeneID. Supplemental Table 12. KEGG BRITE categories summarizing significantly enriched DEGs (up, downregulated and low expression). Supplemental Table 13. Enriched KEGG Pathways (ShinyGO). Supplemental Table 14. Enriched Biological Processes (BP) GO terms (ShinyGO). Supplemental Table 15. Enriched Molecular Function (MF) GO terms (ShinyGO). Supplemental Table 16. Gene cluster classification, predicted function and probable metal-binding sites.
DOI: 10.6084/m9.figshare.25376166.v1
title: Additional file 2 of Early transcriptional changes of heavy metal resistance and multiple efflux genes in Xanthomonas campestris pv. campestris under copper and heavy metal ion stress

description: Additional file 2: Supplemental Table 1. Read quality and mapping statictics of Illumina reads from copper stress and control treatments involving Xcc BrA1. Supplemental Table 2. qPCR primers and target genes for validation of Transcriptomic results. Supplemental Table 3. qPCR primer gene targets. Targets were identified in Xcc BrA1 from genomes characterised in Ramnarine, Jayaraman and Ramsubhag (2022). Ramnarine, Stephen D. B., Jr., Jayaraj Jayaraman, and Adesh Ramsubhag. 2022. "Comparative genomics of the black rot pathogen Xanthomonas campestris pv. campestris and non-pathogenic co-inhabitant Xanthomonas melonis from Trinidad reveal unique pathogenicity determinants and secretion system profiles." PeerJ 9 (e12632). Supplemental Table 4. Ct values for qPCR experiments on CuSo4.5H2O exposed cells at 15 (C15), 60 (C60) and 240 (C240) mins. Concentrations are given as 0p - 0ppm/0mM, 200p - 200ppm/0.8mM and 300p - 300ppm/ 1.2mM. Supplemental Table 5. Average log2FC values of gene targets under tolerant and resistant copper stress at 15 min, 1 hr and 4hr exposure time points. Supplemental Table 6. Ct values from qPCR experiments where by cells were exposed to different heavy metal concentrations for 1 hr. Supplemental Table 7. Average Log2FC values for MDR efflux pumps and other targets under heavy metal stress at the 1hr exposure. Supplemental Table 8. Upregulated genes (logFC ≥ 1). Supplemental Table 9. Downregulated genes (logFC ≤ 1). Supplemental Table 10. Low expression genes (logFC &lt; 1 or &gt; -1). Supplemental Table 11. Differentially expressed mobile elements, IS and Tn elements at the initial timepoint sampled. Refer to linked multifasta and annotation files to correlate with GeneID. Supplemental Table 12. KEGG BRITE categories summarizing significantly enriched DEGs (up, downregulated and low expression). Supplemental Table 13. Enriched KEGG Pathways (ShinyGO). Supplemental Table 14. Enriched Biological Processes (BP) GO terms (ShinyGO). Supplemental Table 15. Enriched Molecular Function (MF) GO terms (ShinyGO). Supplemental Table 16. Gene cluster classification, predicted function and probable metal-binding sites.
DOI: 10.6084/m9.figshare.25376109
title: Additional file 1 of Does the use of different scaffolds have an impact on the therapeutic efficacy of regenerative endodontic procedures? A systematic evaluation and meta-analysis

description: Additional file 1. Appendix Table 1. Search strategy used for each database.
DOI: 10.6084/m9.figshare.25376109.v1
title: Additional file 1 of Does the use of different scaffolds have an impact on the therapeutic efficacy of regenerative endodontic procedures? A systematic evaluation and meta-analysis

description: Additional file 1. Appendix Table 1. Search strategy used for each database.
DOI: 10.6084/m9.figshare.26691400
title: Additional file 3 of Proteomic analysis of mitochondria associated membranes in renal ischemic reperfusion injury

description: Additional file 3: Table S1. Subcellular distribution of total and differential proteins.
DOI: 10.6084/m9.figshare.26691400.v1
title: Additional file 3 of Proteomic analysis of mitochondria associated membranes in renal ischemic reperfusion injury

description: Additional file 3: Table S1. Subcellular distribution of total and differential proteins.
DOI: 10.6084/m9.figshare.26691403
title: Additional file 4 of Proteomic analysis of mitochondria associated membranes in renal ischemic reperfusion injury

description: Additional file 4: Table S2. Enrichment analysis of total porteins.
DOI: 10.6084/m9.figshare.26691403.v1
title: Additional file 4 of Proteomic analysis of mitochondria associated membranes in renal ischemic reperfusion injury

description: Additional file 4: Table S2. Enrichment analysis of total porteins.
DOI: 10.6084/m9.figshare.26691406
title: Additional file 5 of Proteomic analysis of mitochondria associated membranes in renal ischemic reperfusion injury

description: Additional file 5: Table S3. Enrichment analysis of differential proteins.
DOI: 10.6084/m9.figshare.26691406.v1
title: Additional file 5 of Proteomic analysis of mitochondria associated membranes in renal ischemic reperfusion injury

description: Additional file 5: Table S3. Enrichment analysis of differential proteins.
DOI: 10.6084/m9.figshare.26691412
title: Additional file 6 of Proteomic analysis of mitochondria associated membranes in renal ischemic reperfusion injury

description: Additional file 6. Table S4. The top 30 proteins in each of the five algorithms.
DOI: 10.6084/m9.figshare.26691412.v1
title: Additional file 6 of Proteomic analysis of mitochondria associated membranes in renal ischemic reperfusion injury

description: Additional file 6. Table S4. The top 30 proteins in each of the five algorithms.
DOI: 10.6084/m9.figshare.26691418
title: Additional file 4 of Influential upregulation of KCNE4: Propelling cancer associated fibroblasts-driven colorectal cancer progression

description: Supplementary Material 4 Table S1: Primers for qRT-PCR
DOI: 10.6084/m9.figshare.26691418.v1
title: Additional file 4 of Influential upregulation of KCNE4: Propelling cancer associated fibroblasts-driven colorectal cancer progression

description: Supplementary Material 4 Table S1: Primers for qRT-PCR
DOI: 10.6084/m9.figshare.25389905
title: Additional file 2 of Species delimitation of tea plants (Camellia sect. Thea) based on super-barcodes

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.25389905.v1
title: Additional file 2 of Species delimitation of tea plants (Camellia sect. Thea) based on super-barcodes

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.25389907
title: Additional file 2 of The construction of modular universal chimeric antigen receptor T (MU-CAR-T) cells by covalent linkage of allogeneic T cells and various antibody fragments

description: Additional file 2. Primary data.
DOI: 10.6084/m9.figshare.25389907.v1
title: Additional file 2 of The construction of modular universal chimeric antigen receptor T (MU-CAR-T) cells by covalent linkage of allogeneic T cells and various antibody fragments

description: Additional file 2. Primary data.
DOI: 10.6084/m9.figshare.25389913
title: Additional file 2 of Liquid–liquid phase separation of H3K27me3 reader BP1 regulates transcriptional repression

description: Additional file 2: Table S1. RNA-seq data of the BP1ΔIDR2-C strain. Table S2. Overlap between upregulated genes in ΔKmt6 and BP1ΔIDR2-C; ΔBP1 and BP1ΔIDR2-C; or ΔKmt6, ΔBP1, and BP1ΔIDR2-C strains. Table S3. Overlap between upregulated genes and H3K27me3-enriched genes among ΔKmt6, ΔBP1, and BP1ΔIDR2-C strains. Table S4. RNA-seq data of PKS, NRPS, and P450-associated genes in ΔBP1 and BP1ΔIDR2-C strains. Table S5. Primers used in this study.
DOI: 10.6084/m9.figshare.25389913.v1
title: Additional file 2 of Liquid–liquid phase separation of H3K27me3 reader BP1 regulates transcriptional repression

description: Additional file 2: Table S1. RNA-seq data of the BP1ΔIDR2-C strain. Table S2. Overlap between upregulated genes in ΔKmt6 and BP1ΔIDR2-C; ΔBP1 and BP1ΔIDR2-C; or ΔKmt6, ΔBP1, and BP1ΔIDR2-C strains. Table S3. Overlap between upregulated genes and H3K27me3-enriched genes among ΔKmt6, ΔBP1, and BP1ΔIDR2-C strains. Table S4. RNA-seq data of PKS, NRPS, and P450-associated genes in ΔBP1 and BP1ΔIDR2-C strains. Table S5. Primers used in this study.
DOI: 10.15468/dl.kpdcjr
title: Occurrence Download

description: A dataset containing 3217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Poland",
 "TaxonKey is Meles meles (Linnaeus, 1758)"
 ]
}

 The dataset includes 3217 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072854-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b66h2c
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Epidendrum flexuosum G.Mey."
 ]
}

 The dataset includes 79 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072855-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25389502
title: Additional file 1 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 1: Table S1. Main clinical and epidemiological characteristics of the study population. All RA patients, RA patients at baseline, RA patients after 12 weeks of TNFi therapy and control individuals are separately characterized. Abbreviations: N, sample size; NA, not applicable; M, mean; RA, rheumatoid arthritis.
DOI: 10.18739/a2b56d401
title: Imnavait Logger Data NIMS 2014

description: Logger records from the Networked Info-mechanical Systems (NIMS), Transect length: ~50m The data was recorded using a CR3000 logger. The sensor trolley was equipped with instruments for recording the distance to vegetation canopy (SR50a Sonic Distance, Campbell Scientific), up- and downwelling short- and longwave radiation (CNR4 net radiometer, Kipp & Zonen), air temperature and surface temperature (SI-111 IR radiometer, Apogee Instruments Inc.) and spectral reflection (Jaz Combo-2, Ocean Optics; GreenSeeker RT100 (505), NTech).
DOI: 10.18739/a26d5p968
title: Kite Aerial Photography NIMS grid Atqasuk, Alaska 2015

description: Aerial photographs of the Networked Info-mechanical Systems (NIMS) grid in Atqasuk, Alaska were taken using a rig and kite system. As part of the NIMS grid, white boards were nailed into the tundra to act as Ground Control Points (GCPs). The purpose of these boards was to facilitate the visibility of the grid from the aerial photographs, as well as to facilitate georeferencing using ArcMap GIS. Most of the pictures taken are high resolution although only a few are lacking good quality. The photographs are arranged according to flight date. The kite was flown about 2 times a week throughout July and August of summer 2015.
DOI: 10.18739/a22n4zh24
title: Phenology of SEASONS (seasonal manipulation via snow removal) experiment data:1995-2003

description: Weekly phenological measurements were made on eight vascular plant species over a nine-year period (1995-2003) in response to a season length extension manipulation by snow removal in the Spring and protection from snow build up in the Fall. One set of season manipulation plots also included a soil warming treatment applied by cold frame heating cables. Species were: Cassiope tetragona, Eriophorum vaginatum, Carex bigelowii, Ledum palustre, Vaccinium vitis-idaea, Salix pulchra, Betula nana, Polygonum bistorta.
DOI: 10.15468/dl.t3rn7b
title: Occurrence Download

description: A dataset containing 3622 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Chinese Taipei, China, Hong Kong)",
 "TaxonKey is Eurya nitida Korth."
 ]
}

 The dataset includes 3622 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027658-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a2xw47v7h
title: Water Table Depth (WTD) NIMS grid Atqasuk, Alaska 2015

description: Water table depth (WTD) measurements were taken along the Networked Info-mechanical Systems (NIMS) grid in Atqasuk, Alaska during the summer of 2015. The NIMS grid is situated about 50 meters to the south of the The International Tundra Experiment (ITEX) dry site. If a uniform representation of the water table within each plot was visible, then a WTD tube was placed there to measure the change in water table throughout the season. For instance if the plot was half saturated and half dry, then that plot was skipped and no tube was placed there. The exact location of WTD tubes are as follows: Between meters 0-1, 3-4, 5-6, 7-8, 9-10, 11-12, 13-14, 15-16, 17-18, 19-20, 21-22, 23-24, 25-26, 32-33, 34-35, 36-37, 38-39, 40-41, 42-43, 44-45, 46-47 & 48-49. A total of 22 WTD tubes were installed into the NIMS grid in Atqasuk. Measurements were made every few days during the summer snow free period between mid June and mid August. WTD was calculated as the difference between the depth (cm) of the water table above or below the measuring tube (- Values = water above tube, + Values= water level below the height of the tube) and the height of the top of the measuring tube above the ground level. Measurements were not made (NA in data sheet) if there was persistent snow cover, interference or disturbance from other experimental infrastructure, or if water table depth tubes were dry to the upper surface of the permafrost.
DOI: 10.15468/dl.v8xhkf
title: Occurrence Download

description: A dataset containing 2032 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (North America, South America, Oceania, Africa, Asia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudoscleropodium purum (Hedw.) M.Fleisch."
 ]
}

 The dataset includes 2032 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027657-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a2959c70s
title: Kite Aerial Photography NIMS grid Atqasuk, Alaska 2014

description: Aerial photographs of the Networked Info-mechanical Systems (NIMS) grid in Atqasuk, Alaska were taken using a rig and kite system. As part of the NIMS grid, white boards were nailed into the tundra to act as Ground Control Points (GCPs). The purpose of these boards was to facilitate the visibility of the grid from the aerial photographs, as well as to facilitate georeferencing using ArcMap GIS. Most of the pictures taken are high resolution although only a few are lacking good quality. The photographs are arranged according to flight date. The kite was flown about once a week throughout June, July and August of summer 2014.
DOI: 10.18739/a22b8vb3j
title: Active Layer NIMS Atqasuk, Alaska 2014

description: Active Layer measurements were taken at each Networked Info-Mechanical System (NIMS) grid plot in Atqasuk, Alaska throughout the 2014 summer field season. University of Texas, El Paso UTEP Systems Ecology Lab's (SEL) Circumarctic Active Layer Monitoring (CALM) depth probe was used to take measurements. Depth was measured on the probe as the distance from frozen active layer to the top surface of the vegetation. If water was present then it was measured to the top of the biomass.
DOI: 10.18739/a2vh5ch5p
title: Svalbard REU program undergraduate student theses

description: Completed undergraduate theses and reports from Svalbard REU participants
DOI: 10.15468/dl.jjf0dy
title: Occurrence Download

description: A dataset containing 1267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Engelhardia Lesch. ex Blume",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1267 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003522-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.