cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/133330
title: Singlebeam Echosounder data collected during research cruise NA116 using a Knudsen 3260 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133326
title: SSV (Sound Speed Velocimeter) data collected during research cruise NA116 using a AML SVXchange instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429214
title: MOESM3 of Evidence for the impacts of agroforestry on agricultural productivity, ecosystem services, and human well-being in high-income countries: a systematic map protocol

description: Additional file 3. SM data extraction spreadsheet. Data extraction spreadsheet describing the data coding components for creating the systematic map.
DOI: 10.6084/m9.figshare.7429214.v1
title: MOESM3 of Evidence for the impacts of agroforestry on agricultural productivity, ecosystem services, and human well-being in high-income countries: a systematic map protocol

description: Additional file 3. SM data extraction spreadsheet. Data extraction spreadsheet describing the data coding components for creating the systematic map.
DOI: 10.7284/133339
title: Expendable Probe data collected during research cruise NA117 using a Sippican MK21 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133335
title: INS (Inertial Navigation System) data collected during research cruise NA117 using a Kongsberg Seatex MRU-5 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133340
title: INS (Inertial Navigation System) data collected during research cruise NA117 using a Kongsberg Seapath 330+ instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133341
title: Meteorological Station data collected during research cruise NA117 using a Coastal Weatherpak-2000 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133336
title: Multibeam Echosounder data collected during research cruise NA117 using a Kongsberg EM302 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133337
title: Multibeam Echosounder data collected during research cruise NA117 using a Kongsberg EM302 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133338
title: Singlebeam Echosounder data collected during research cruise NA117 using a Knudsen 3260 instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133334
title: SSV (Sound Speed Velocimeter) data collected during research cruise NA117 using a AML SVXchange instrument system onboard the platform EV Nautilus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/117187
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise NH1108 using a Hawaii UHDAS instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429124
title: Additional file 2: of Application of the CRISPR/Cas9 system for modification of flower color in Torenia fournieri

description: The results of next-generation amplicon sequencing of cv. Crown Violet and nine genome-edited torenia lines. Numbers after sequence names in the Excel worksheets are sequential serial numbers and read counts of each fragment. (XLSX 668 kb)
DOI: 10.6084/m9.figshare.7429124.v1
title: Additional file 2: of Application of the CRISPR/Cas9 system for modification of flower color in Torenia fournieri

description: The results of next-generation amplicon sequencing of cv. Crown Violet and nine genome-edited torenia lines. Numbers after sequence names in the Excel worksheets are sequential serial numbers and read counts of each fragment. (XLSX 668 kb)
DOI: 10.7284/117188
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise NH1108 using a Sea-Bird SBE-911+ instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/117184
title: Meteorological Station data collected during research cruise NH1108 using a SIO MET-System instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/117185
title: Singlebeam Echosounder data collected during research cruise NH1108 using a Knudsen 320B/R instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429097
title: Whole genome sequencing, Amblyseius swirskii pooled population, ONT MinION -- ONT data I2 run FASTQ

description: ReadMe: ONT data I2 runKim Ferguson, kim.ferguson@wur.nl or kfergy@gmail.comWageningen University and Research<br>This ReadMe file is for all files associated with this project, and is present in each data package.<br>There are five .tar file sets in total available on figshare:&gt; 20171130_1637_FAH35464_I2_run 1 part I fast5.tar&gt; 20171130_1637_FAH35464_I2_run 1 part II fast5.tar&gt; 20171201_0934_FAH35464_I2_run 1 restart 1 fast5.tar&gt; 20171201_0954_FAH35464_I2_run 1 restart 2 nobasecalling fast5.tar&gt; ONT data I2 run fastq.tar<br>Read creation dates: 30-11-2017 and 01-12-2017Albacore run date: 04-12-2017<br>Organism: Amblyseius swirskiiPopulation: Koppert biocontrol population, inbred for 10 generationsCollected: &gt;1000 individuals for DNA extraction, males, females, juveniles, placed in 96% EtOHContamination: Collected with food source, pollen from Typha latifolia, and likely was part of DNA extractionExtraction protocol: QIAGEN MagAttract HMW DNA Kit (QIAGEN) according to the manual, while the final DNA product was eluted with nuclease free waterSequenced using ONT MinION sequencing technology<br>MinION model: MinION Mk1BFlowcell: FAH35464 FLO-MIN107 R9.5Ligation kit: Ligation Sequencing Kit version 108 (SQK-LSK108) (no genomic shearing)MinKNOW: version 1.10.16Reads that were basecalled in the cloud: &gt; /20171130_1635_FAH35464_I2_run 1 mux&gt; /20171130_1635_FAH35464_I2_run 1 full&gt; /20171130_1635_FAH35464_I2_run 1 restart 1 mux&gt; /20171130_1635_FAH35464_I2_run 1 restart 1 fullReads that were basecalled using Albacore (version 2.1.3):&gt; /20171201_0952_FAH35464_I2_run 1 restart 2 nobasecalling mux&gt; /20171201_0954_FAH35464_I2_run 1 restart 2 nobasecalling fullAlbacore results:&gt; /basecalled_reads 20171201_0952_FAH35464_I2_run 1 restart 3 nobasecalling mux&gt; /basecalled_reads 20171201_0954_FAH35464_I2_run 1 restart 3 nobasecalling full<br>Data further used in Paspati et al, in prep<br>Fun facts:<br>Files have been separated into fast5 and fastq files, with additional splitting into parts I and II for "/20171130_1635_FAH35464_I2_run 1 full" due to size. Each fast5 folder has been uploaded separateley<br>fast5 folders are often separated into Fail, Pass, and Skip, this is related to the cloud basecalling by the MinKNOW program, based on initial and ongoing quality assessments.<br>fastq folders and files would be considered raw and uncorrected, and were either basecalled in th cloud or using Albacore (see below). All fastq folders have been compressed and uploaded together.<br>There are two restarts in this sequencing run, due to MinKNOW crashing, either after a few hours or overnight. After the second crash, we decided to switch to no basecalling in hope that this would solve the issues.
DOI: 10.7284/107176
title: Meteorological Station data collected during research cruise NH1203 using a SIO MET-System instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429088
title: A multi-regional obsidian database for the Eastern Plains

description: Northern and Central Plains obsidian artifacts curated by the Smithsonian Institution’s National Museum of Natural History have received little attention by researchers working to understand the nature of long-distance trade, exchange, and interaction. We present the results of a chemical analysis of obsidian stone tools and debitage from these collections. Significant differences in patterns of obsidian use exist between the Northern and Central Plains. Shifts in obsidian use through time within the Central Plains may indicate larger socioeconomic shifts, while obsidian from Northern Plains assemblages suggests an antiquity to interaction networks at least as old as the first Plains Village sites in the region. By creating the first multi-regional obsidian database encompassing parts of the Northern and Central Plains, we expect that the data and our interpretations enhance discussions at the intersection of trade, exchange, and inter-group interaction in the Northern as well as Central Plains.
DOI: 10.6084/m9.figshare.7429088.v1
title: A multi-regional obsidian database for the Eastern Plains

description: Northern and Central Plains obsidian artifacts curated by the Smithsonian Institution’s National Museum of Natural History have received little attention by researchers working to understand the nature of long-distance trade, exchange, and interaction. We present the results of a chemical analysis of obsidian stone tools and debitage from these collections. Significant differences in patterns of obsidian use exist between the Northern and Central Plains. Shifts in obsidian use through time within the Central Plains may indicate larger socioeconomic shifts, while obsidian from Northern Plains assemblages suggests an antiquity to interaction networks at least as old as the first Plains Village sites in the region. By creating the first multi-regional obsidian database encompassing parts of the Northern and Central Plains, we expect that the data and our interpretations enhance discussions at the intersection of trade, exchange, and inter-group interaction in the Northern as well as Central Plains.
DOI: 10.6084/m9.figshare.7429070
title: Supplementary Material for: Identifying Potentially Modifiable Factors Associated with Treatment Non-Adherence in Paediatric Growth Hormone Deficiency: A Systematic Review

description: <b><i>Background:</i></b> Despite the developments of recombinant growth hormone (rhGH) treatment and the benefits in long-term clinical health outcomes, evidence has shown that many children with growth hormone deficiency (GHD) still fail to achieve their target adult height. Suboptimal outcomes have been largely attributed to treatment non-adherence. <b><i>Methods:</i></b> A search of 11 electronic databases was undertaken to identify relevant articles, published in English, between 1985 and 2018. Additional search strategies included hand-searching topic review articles to identify eligible studies. Articles were screened against the inclusion eligibility criteria and data on sample characteristics, study design, outcomes, and key findings was extracted. The results were narratively synthesised and categorised using the COM-B theoretical framework. <b><i>Results:</i></b> Twenty-one full-text articles were assessed for eligibility, of which 6 articles met the inclusion criteria. The prevalence of non-adherence in the included studies varied from 7 to 71%. Potentially modifiable factors associated with rhGH non-adherence were categorised within the COM-B framework; key factors included: a lack of knowledge and understanding of the condition and treatment, discomfort and pain associated with injections, and the quality of the healthcare professional-patient relationship. <b><i>Conclusion:</i></b> This review highlights the scope of the adherence problem evident amongst the paediatric GHD population and in addition presents the wide range of potentially modifiable factors that explain this health-related behaviour.
DOI: 10.6084/m9.figshare.7429076
title: Semantic Trails Datasets

description: This page contains the Semantic Trails Datasets (STDs) created from two different collections of check-ins obtained from the Foursquare platform.<br>The check-ins have been preprocessed in order to remove suspicious or erroneous check-ins. We constructed the semantic trails by grouping check-ins close in time and by adding various semantic information.<br>In details, the resulting CSV files have the following fields: <i>trail_id</i>, <i>user_id</i>, <i>venue_id</i>, <i>venue_category</i>, <i>venue_schema</i>, <i>venue_city</i>, <i>venue_country</i>, and <i>timestamp</i>.<br>The <i>user_id</i> is a numeric identifier and it has been anonymized. The <i>venue_id</i> corresponds to the Foursquare URI of the venue and, therefore, it can be used to obtain additional information. The <i>venue_category</i> is a category identifier from the Foursquare taxonomy, while the <i>venue_schema</i> is the corresponding Schema.org term. The <i>venue_city</i> is the Wikidata entity corresponding to the city in which the venue is located, while the <i>venue_country</i> is the country associated with the city. Finally, the <i>timestamp</i> is expressed in the ISO 8601 format and it has been approximated to the minute.<br>We also provide a Turtle version of the datasets, created starting from the CSV files.<br>
DOI: 10.6084/m9.figshare.7429070.v1
title: Supplementary Material for: Identifying Potentially Modifiable Factors Associated with Treatment Non-Adherence in Paediatric Growth Hormone Deficiency: A Systematic Review

description: <b><i>Background:</i></b> Despite the developments of recombinant growth hormone (rhGH) treatment and the benefits in long-term clinical health outcomes, evidence has shown that many children with growth hormone deficiency (GHD) still fail to achieve their target adult height. Suboptimal outcomes have been largely attributed to treatment non-adherence. <b><i>Methods:</i></b> A search of 11 electronic databases was undertaken to identify relevant articles, published in English, between 1985 and 2018. Additional search strategies included hand-searching topic review articles to identify eligible studies. Articles were screened against the inclusion eligibility criteria and data on sample characteristics, study design, outcomes, and key findings was extracted. The results were narratively synthesised and categorised using the COM-B theoretical framework. <b><i>Results:</i></b> Twenty-one full-text articles were assessed for eligibility, of which 6 articles met the inclusion criteria. The prevalence of non-adherence in the included studies varied from 7 to 71%. Potentially modifiable factors associated with rhGH non-adherence were categorised within the COM-B framework; key factors included: a lack of knowledge and understanding of the condition and treatment, discomfort and pain associated with injections, and the quality of the healthcare professional-patient relationship. <b><i>Conclusion:</i></b> This review highlights the scope of the adherence problem evident amongst the paediatric GHD population and in addition presents the wide range of potentially modifiable factors that explain this health-related behaviour.
DOI: 10.7284/107177
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise NH1205 using a Hawaii UHDAS instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107191
title: GNSS (Global Navigation Satellite System) data collected during research cruise NH1205 using a Furuno GP-150 instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107192
title: GNSS (Global Navigation Satellite System) data collected during research cruise NH1205 using a Furuno GP-90D instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107209
title: GNSS (Global Navigation Satellite System) data collected during research cruise NH1205 using a Garmin GPS-17HVS instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107215
title: GNSS (Global Navigation Satellite System) data collected during research cruise NH1205 using a Ashtech ADU2 instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107203
title: Gyrocompass data collected during research cruise NH1205 using a Sperry MK-37 instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7429010
title: Supplementary Material for: Can the Mixed Virtual Reality Simulator Into D’mentia Enhance Empathy and Understanding and Decrease Burden in Informal Dementia Caregivers?

description: <b><i>Objective:</i></b> To evaluate whether the mixed virtual reality dementia simulator training Into D’mentia increased informal caregivers’ understanding for people with dementia, their empathy, sense of competence, relationship quality with the care receiver, and/or decreased burden, depression, and anxiety. <b><i>Methods:</i></b> A quasi-experimental longitudinal study with an intervention group (<i>n</i> = 145) and a control group (<i>n</i> = 56) was conducted. All participants were informal caregivers of people with dementia. They completed six questionnaires and semi-structured interviews 1 week before as well as 1 week, 2.5 months, and 15 months after the training. Data were analyzed on both group and individual level using linear mixed model analyses and Reliable Change Indices. <b><i>Results:</i></b> Eighty-five percent of the participants in the intervention group found the intervention useful; 76% said they had changed their approach to caregiving, and 61% stressed that the intervention had increased their understanding of dementia. No significant differences were found between the two groups over time regarding empathy, sense of competence, relationship quality with the care receiver, burden, depression, and anxiety, at either group or individual level. <b><i>Conclusion:</i></b> Caregivers indicated that the Into D’mentia intervention improved their understanding of dementia, that they had learned to be more patient, to take things more slowly, and to focus on positive aspects of caregiving. However, no significant change was found on the variables assessed via the questionnaires. Future research can consider enriching this intervention with other aspects such as more educational material, more simulations, and group sessions, tailored to the individual caregiver and his/her situation, and examine whether these new interventions yield change on questionnaires. These new, more personalized interventions for dementia caregivers could help caregivers to better understand the persons with dementia they care for and to ultimately enhance the well-being of both caregivers and persons with dementia.
DOI: 10.7284/107179
title: Meteorological Station data collected during research cruise NH1205 using a SIO MET-System instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7428974
title: sift data

description: dataset for test P-HDBF
DOI: 10.6084/m9.figshare.7428971
title: ivecs_read.m

description: the matlab code used to read the dataset
DOI: 10.6084/m9.figshare.7428977
title: Exploring an agency-communion model of identity transformation in recovery from substance misuse

description: Background: Narrative research shows that identity change is key to recovery from substance misuse. Theories have focused on either personal or social factors in this process. A framework encompassing Agency and Communion has been useful in understanding narratives in similar populations. Objectives: The study proposes that substance misuse and recovery can be understood from an Agency-Communion perspective. Method: The Life As A Film Task (LAAF) and repertory grids were used to explore Agency and Communion in a sample of 32 participants. Results: Smallest Space Analysis of LAAF items revealed four different narratives according to themes of Agency and Communion. Case examples indicated that Agency and Communion predicted a recovery identity, and the absence of Agency and Communion predicted substance misuse. Analysis of repertory grids showed fixed low Agency/Communion construct systems in cases of substance misuse and transformed high Agency/Communion construct systems in cases of recovery. Transformation from a low Agency/Communion substance-using identity toward a high Agency/Communion recovery identity was highlighted. Conclusions: These preliminary findings illustrate the role of Agency and Communion processes in identity-transforming recovery from substance misuse.
DOI: 10.6084/m9.figshare.7428977.v1
title: Exploring an agency-communion model of identity transformation in recovery from substance misuse

description: Background: Narrative research shows that identity change is key to recovery from substance misuse. Theories have focused on either personal or social factors in this process. A framework encompassing Agency and Communion has been useful in understanding narratives in similar populations. Objectives: The study proposes that substance misuse and recovery can be understood from an Agency-Communion perspective. Method: The Life As A Film Task (LAAF) and repertory grids were used to explore Agency and Communion in a sample of 32 participants. Results: Smallest Space Analysis of LAAF items revealed four different narratives according to themes of Agency and Communion. Case examples indicated that Agency and Communion predicted a recovery identity, and the absence of Agency and Communion predicted substance misuse. Analysis of repertory grids showed fixed low Agency/Communion construct systems in cases of substance misuse and transformed high Agency/Communion construct systems in cases of recovery. Transformation from a low Agency/Communion substance-using identity toward a high Agency/Communion recovery identity was highlighted. Conclusions: These preliminary findings illustrate the role of Agency and Communion processes in identity-transforming recovery from substance misuse.
DOI: 10.7284/107185
title: Winch data collected during research cruise NH1205 using a Markey DUSH-5 instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7428947
title: Unsupervised embrace pose recognition method for stuffed-toy robot

description: This paper presents a new approach to model and recognize embrace interaction based on an embrace-comfortable fabric-based touchpad attached to a stuffed-toy robot with <i>k</i>-mean clustering of location-based features. Evaluation of the method demonstrated its ability to recognize embrace poses in new users with a suitable number of clusters. Consequently, the proposed class assignment method, which assigned classes based on the most common patterns, was used to determine the number of clusters in the model selection experiment. The experimental results showed that the selected model could obtain sufficient recognition performance, which contributed to a guideline for model selection, based directly on variations of embraces without requiring ground truths. This guideline could potentially be applied to different target populations and definitions of the embrace pose.
DOI: 10.7284/106913
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise NH1206 using a Hawaii UHDAS instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition