cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7053166
title: camelyon_flamby

description: Features for 4 slides of the Camelyon dataset, produced as described by the FLamby project: https://github.com/owkin/FLamby/tree/1e8023c05814852c23c0b2acb10abba0f7c2c4ee/flamby/datasets/fed_camelyon16
DOI: 10.6084/m9.figshare.14872559
title: The impact of pRAP vectors on plant genetic transformation and pathogenesis studies including an analysis of <i>BRI1-ASSOCIATED RECEPTOR KINASE 1 (BAK1)</i>-mediated resistance

description: Crop improvement can be facilitated through efficient gene transfer, leading to pRAP plasmid development. Comparative hairy root transformation results from 24 previously published articles examining 29,756 roots show a 70% transformation efficiency. Average gene overexpression was 11.24-fold and −3.84-fold in RNAi roots. New studies show <i>Glycine max</i> <i>BRI1-ASSOCIATED RECEPTOR KINASE 1 (BAK1) overexpression leads to</i> a 67% decrease in <i>Heterodera glycines</i> parasitism while <i>BAK1-1 RNAi led to</i> a 4.8-fold increase in parasitism. The results show pathogen associated molecular pattern triggered immunity (PTI) functions in the <i>G. max-H. glycines</i> pathosystem during defense. Consequently, the pRAP vectors have applicability for studying basic biology and defense in other agricultural plants including <i>Manihot esculenta</i> (cassava)<i>, Zea mays</i> (maize)<i>, Oryza sativa</i> (rice)<i>, Triticum aestivum</i> (wheat)<i>, Sorghum bicolor</i> (sorghum)<i>, Brassica rapa</i> (rape seed)<i>, Solanum tuberosum</i> (potato)<i>, Solanum lycopersicum</i> (tomato)<i>, Elaes guineensis</i> (oil palm)<i>, Saccharum officinalis</i> (sugarcane) and <i>Beta vulgaris</i> (sugar beet) since each have BAK1 homologs<i>.</i>
DOI: 10.6084/m9.figshare.14872559.v1
title: The impact of pRAP vectors on plant genetic transformation and pathogenesis studies including an analysis of <i>BRI1-ASSOCIATED RECEPTOR KINASE 1 (BAK1)</i>-mediated resistance

description: Crop improvement can be facilitated through efficient gene transfer, leading to pRAP plasmid development. Comparative hairy root transformation results from 24 previously published articles examining 29,756 roots show a 70% transformation efficiency. Average gene overexpression was 11.24-fold and −3.84-fold in RNAi roots. New studies show <i>Glycine max</i> <i>BRI1-ASSOCIATED RECEPTOR KINASE 1 (BAK1) overexpression leads to</i> a 67% decrease in <i>Heterodera glycines</i> parasitism while <i>BAK1-1 RNAi led to</i> a 4.8-fold increase in parasitism. The results show pathogen associated molecular pattern triggered immunity (PTI) functions in the <i>G. max-H. glycines</i> pathosystem during defense. Consequently, the pRAP vectors have applicability for studying basic biology and defense in other agricultural plants including <i>Manihot esculenta</i> (cassava)<i>, Zea mays</i> (maize)<i>, Oryza sativa</i> (rice)<i>, Triticum aestivum</i> (wheat)<i>, Sorghum bicolor</i> (sorghum)<i>, Brassica rapa</i> (rape seed)<i>, Solanum tuberosum</i> (potato)<i>, Solanum lycopersicum</i> (tomato)<i>, Elaes guineensis</i> (oil palm)<i>, Saccharum officinalis</i> (sugarcane) and <i>Beta vulgaris</i> (sugar beet) since each have BAK1 homologs<i>.</i>
DOI: 10.6084/m9.figshare.20984461
title: Global distribution and diversity of alien Ponto-Caspian amphipods

description: The file in .csv format contains distribution data (locality, country, GPS coordinates, and drainage) for all Ponto-Caspian amphipods that are known to occur outside the native area.
DOI: 10.34740/kaggle/dsv/4168806
title: Elon Musk Tweets
DOI: 10.6084/m9.figshare.20984878
title: Alibaba Stock Prices (Weekly Average) from January 1, 2019 to June 30, 2020

description: Alibaba Stock Prices (Weekly Average) from January 1, 2019 to June 30, 2020
DOI: 10.6084/m9.figshare.20984878.v1
title: Alibaba Stock Prices (Weekly Average) from January 1, 2019 to June 30, 2020

description: Alibaba Stock Prices (Weekly Average) from January 1, 2019 to June 30, 2020
DOI: 10.5281/zenodo.7054524
title: COMPASS-DOE/Rs-synthesis: JGR-BGS accepted version

description: This code and data are for conducting a meta-analysis on the effect of precipitation changes on soil respiration using ecosystem type, manipulation strength and duration, as well as soil clay and organic carbon content as modifiers. Results and figures from the version here appear in the published manuscript.
DOI: 10.5281/zenodo.7054523
title: COMPASS-DOE/Rs-synthesis: JGR-BGS accepted version

description: This code and data are for conducting a meta-analysis on the effect of precipitation changes on soil respiration using ecosystem type, manipulation strength and duration, as well as soil clay and organic carbon content as modifiers. Results and figures from the version here appear in the published manuscript.
DOI: 10.5281/zenodo.6459150
title: Bulk NGS/allele quantification - Highly efficient generation of isogenic pluripotent stem cell models using prime editing

description: This file contains sequencing results for bulk NGS and amplicons covering specific regions of interest related to prime editing of hPSCs.
DOI: 10.5281/zenodo.6459151
title: Amplicon Sequencing - Highly efficient generation of isogenic pluripotent stem cell models using prime editing

description: This file contains sequencing results for amplicons covering specific regions of interest related to prime editing of hPSCs.
DOI: 10.5281/zenodo.7054551
title: Export for MOdeLINGVis of the Expected Protein Profile of Neurotypical Young Adults

description: INTRODUCTION: The dataset of the full raw electrophoretic data, named Expected Protein Profile workbook, is treated to be imported to MATLAB. Please refer to https://doi.org/10.5281/zenodo.7054406 to have access to the full dataset and to the preliminary methodology ("EPPStrategyDataExport") used in the electrophoretic data. This treated electrophoretogram was named "ExportForMOdeLINGVis" and can also be consulted at https://tinyurl.com/ExportForMOdeLINGVis. METHODOLOGY: The electrophoretic dataset was treated and imported to MATLAB. First, the section "Present in the following subphenomes" was added, which comprised binary variables (present/absent) to identify in which subgroup the Molecular Bands were present. Secondly, the previously obtained preliminary triple entry table was added to the Molecular Bands Summary for each Subject (ex: D01309). Lastly, the database was implemented into the MODeLING.Vis toolbox and the variables were imported into arrays. Those arrays indexed a linear matrix of the variables: Molecular Bands Subgroups (kDa) and Concentration (ng/µl) of each sample (subject). For the full methodology, please consult https://doi.org/10.5281/zenodo.7041477
DOI: 10.5281/zenodo.7054550
title: Export for MOdeLINGVis of the Expected Protein Profile of Neurotypical Young Adults

description: INTRODUCTION: The dataset of the full raw electrophoretic data, named Expected Protein Profile workbook, is treated to be imported to MATLAB. Please refer to https://doi.org/10.5281/zenodo.7054406 to have access to the full dataset and to the preliminary methodology ("EPPStrategyDataExport") used in the electrophoretic data. This treated electrophoretogram was named "ExportForMOdeLINGVis" and can also be consulted at https://tinyurl.com/ExportForMOdeLINGVis. METHODOLOGY: The electrophoretic dataset was treated and imported to MATLAB. First, the section "Present in the following subphenomes" was added, which comprised binary variables (present/absent) to identify in which subgroup the Molecular Bands were present. Secondly, the previously obtained preliminary triple entry table was added to the Molecular Bands Summary for each Subject (ex: D01309). Lastly, the database was implemented into the MODeLING.Vis toolbox and the variables were imported into arrays. Those arrays indexed a linear matrix of the variables: Molecular Bands Subgroups (kDa) and Concentration (ng/µl) of each sample (subject). For the full methodology, please consult https://doi.org/10.5281/zenodo.7041477
DOI: 10.6084/m9.figshare.20985589
title: USD-CNY Exchange Rates (Weekly Average) from October 1, 2019 to June 30, 2021

description: USD-CNY Exchange Rates (Weekly Average) from October 1, 2019 to June 30, 2021
DOI: 10.6084/m9.figshare.20985589.v1
title: USD-CNY Exchange Rates (Weekly Average) from October 1, 2019 to June 30, 2021

description: USD-CNY Exchange Rates (Weekly Average) from October 1, 2019 to June 30, 2021
DOI: 10.5281/zenodo.7054406
title: Neurotypical young adults' Expected Protein Profile: the EPPStrategyDataExport workbook and strategy applied to the electrophoretic data.

description: INTRODUCTION: A dataset of electrophoretic data, named Expected Protein Profile workbook, is published. The dataset corresponds to the full raw electrophoretogram of the Expected Protein Profiles of the 92 neurotypical young adults. The dataset can also be consulted at: https://tinyurl.com/EPPStrategyDataExport. METHODOLOGY: The dataset consist of a workbook comprising 6 worksheets, which demonstrates the preliminary strategy applied to the electrophoretic data – 6 stages were executed. For the full methodology, please consult https://doi.org/10.5281/zenodo.7041477.
DOI: 10.5281/zenodo.7054405
title: Neurotypical young adults' Expected Protein Profile: the EPPStrategyDataExport workbook and strategy applied to the electrophoretic data.

description: INTRODUCTION: A dataset of electrophoretic data, named Expected Protein Profile workbook, is published. The dataset corresponds to the full raw electrophoretogram of the Expected Protein Profiles of the 92 neurotypical young adults. The dataset can also be consulted at: https://tinyurl.com/EPPStrategyDataExport. METHODOLOGY: The dataset consist of a workbook comprising 6 worksheets, which demonstrates the preliminary strategy applied to the electrophoretic data – 6 stages were executed. For the full methodology, please consult https://doi.org/10.5281/zenodo.7041477.
DOI: 10.6084/m9.figshare.20982352
title: SPRY4-IT1 related sequencing data

description: Sequencing data
DOI: 10.6084/m9.figshare.20982352.v1
title: SPRY4-IT1 related sequencing data

description: Sequencing data
DOI: 10.34943/af6791e2-a331-4036-8b2a-32bd4703b4cf
title: Strait of Georgia Oceanographic Radar System Deployed 2016-03-23

description: The Strait of Georgia CODAR Array was deployed on 2016-03-23 at Strait of Georgia. Strait of Georgia is located between Vancouver Island and the mainland of British Columbia. There are many narrow channels and islands in this region. Located at the south end are the Gulf Islands and San Juan Islands. The Discovery Islands and Discovery Passage are located at the north end. This device is a Oceanographic Radar System. Oceanographic radars measure the ocean surface currents and waves in near real-time, by timing reflected radio waves, and contribute to an accurate prediction of severe weather conditions. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.6084/m9.figshare.20795677
title: Single molecule localisation microscopy image using Nse4-HaloTag budding yeast and JFX650 fluorophore

description: Single molecule localisation microscopy (SMLM) image dataset using Nse4-HaloTag budding yeast and JFX650 fluorophore. <br> Live <em>S. cerevisiae</em> cells expressing Nse4 fused to the self-labelling HaloTag (previously described in Hallett <em>et al</em> (2022), DOI: 10.1093/nar/gkac692) were grown in synthetic complete media until they reached mid-log phase. JFX650 HaloTag ligand (a gift from Luke Lavis, Janelia Research Campus, USA) was added to the culture to a final concentration of 50nM. Cells were incubated in the presence of the dye for 20 min before being harvested, washed in fresh media and deposited on an agarose pad (1% w/v agarose, 50% v/v OptiPrep, 50% v/v 2× SC-media). Samples were then mounted on a circular coverslip and imaged on a custom-built microscope (previously described in Etheridge <em>et al</em> (2021), DOI 10.7554/eLife.68579). Movies were recorded with an exposure time of 10 ms per frame and continuous illumination with a 642nm laser. JFX650 molecules were photo-converted back from a long-lived dark-state by illumination with a pulse of a 488 nm laser. The camera was a Photometrics Evolve Delta using: 45 counts/photon total gain; 0.3017 counts read noise; 400 counts offset. Optical magnification creates 101nm pixels. <br> Nse4 is a sub-unit of a DNA binding protein complex SMC5/6 known for its roles in DNA repair. The individual molecules observed in the image may be diffusing, or immobile when bound to the DNA. <br> The dataset includes: <br> BuddingYeast_Nse4-Halo_10ms.tif: SMLM image stack (10ms per frame) BuddingYeast_Nse4-Halo_Brightfield.tif: A brightfield image of the yeast cells BuddingYeast_Nse4-Halo_10ms_Fit_Template.txt: An example template for fitting the localisations using the Genome Damage and Stability Centre (GDSC) SMLM ImageJ plugin Peak Fit BuddingYeast_Nse4-Halo_10ms.tif.results.xls: An example results file containing the fitted localisations BuddingYeast_Nse4-Halo_10ms.tif.exported.csv: An example of the results exported in a custom comma-separated values (CSV) format (intensity in photons; distances in nm) <br> <br>
DOI: 10.5281/zenodo.6941598
title: Highly efficient generation of isogenic pluripotent stem cell models using prime editing - Datasets

description: This collection contains the following datasets: 1. AAVS1 knock-in genotyping 2. aCGH karyotyping 3. Tabular datasets for associated graphical figures
DOI: 10.5517/ccdc.csd.cc2bmvsm
title: CCDC 2164041: Experimental Crystal Structure Determination

description: Related Article: Ziwei Yu, Shiqi Cao, Yingjie Zhao, Yangwu Guo, Meiqiu Dong, Yue Fu, Jinjin Zhao, Jingrun Yang, Lei Jiang, Yuchen Wu|2022|ACS Applied Materials and Interfaces|14|39451|doi:10.1021/acsami.2c06856
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bq418
title: CCDC 2166219: Experimental Crystal Structure Determination

description: Related Article: Qiao Zhang, Wenbo Wang, Changyong Cai, Shuanggen Wu, Jialing Li, Fenfang Li, Shengyi Dong|2022|Materials Horizons|9|1984|doi:10.1039/D2MH00211F
description: Related Article: Q. Zhang|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bq5mw
title: CCDC 2166268: Experimental Crystal Structure Determination

description: Related Article: Svenja Stürmer, Gerrit A. Luinstra|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bq8fs
title: CCDC 2166355: Experimental Crystal Structure Determination

description: Related Article: Lucinda Wilson, Euan K. Brechin, Scott J. Dalgarno|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bqd6p
title: CCDC 2166472: Experimental Crystal Structure Determination

description: Related Article: Guo Yan|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24vtd7
title: CCDC 1991979: Experimental Crystal Structure Determination

description: Related Article: H. Yang, Y.-P. Fu, Y. Huang, X.-L. Chen, D. Qiao, H.-L. Cui|2022|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|78|488|doi:10.1107/S2053229622005885
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29f6pn
title: CCDC 2127861: Experimental Crystal Structure Determination

description: Related Article: Azadeh Mirzaahmadi, Seyed Abolfazl Hosseini-Yazdi, Elham Safarzadeh, Behzad Baradaran, Morgane Poupon, Michal Dušek|2021|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.19513674.v1
title: A bibliometric analysis of primary ovarian insufficiency from 2010 to 2020

description: This study aimed to carry out a bibliometric analysis of primary ovarian insufficiency (POI) from 2010 to 2020 and to reveal the research status and hotspots in the future. A total of 3087 articles and reviews related to POI published from 2010 to 2020 retrieved from the Web of Science Core Collection were used for bibliometric analysis. CiteSpace and VOSviewer were adopted to analyze countries and regions, organizations, authors, journals, keywords and co-cited references. The number of publications about POI increased year by year. The USA produced the largest number of publications and the most influence in this field. The main research directions of POI can be roughly divided into four aspects according to the analysis of keywords and co-cited references: genetic research of POI; stem cell therapy for patients with POI; prediction of ovarian function; and fertility preservation of cancer patients. Genetic research and stem cell therapy may become research hotspots in the future. This study might be the first bibliometric study to analyze publications of POI from multiple indicators, in order to provide new opinions for the research trends and possible hotspots of POI.
DOI: 10.6084/m9.figshare.19513674
title: A bibliometric analysis of primary ovarian insufficiency from 2010 to 2020

description: This study aimed to carry out a bibliometric analysis of primary ovarian insufficiency (POI) from 2010 to 2020 and to reveal the research status and hotspots in the future. A total of 3087 articles and reviews related to POI published from 2010 to 2020 retrieved from the Web of Science Core Collection were used for bibliometric analysis. CiteSpace and VOSviewer were adopted to analyze countries and regions, organizations, authors, journals, keywords and co-cited references. The number of publications about POI increased year by year. The USA produced the largest number of publications and the most influence in this field. The main research directions of POI can be roughly divided into four aspects according to the analysis of keywords and co-cited references: genetic research of POI; stem cell therapy for patients with POI; prediction of ovarian function; and fertility preservation of cancer patients. Genetic research and stem cell therapy may become research hotspots in the future. This study might be the first bibliometric study to analyze publications of POI from multiple indicators, in order to provide new opinions for the research trends and possible hotspots of POI.
DOI: 10.5281/zenodo.7054826
title: Experimental single-setting quantum state tomography

description: Source data underlying the graphical representations used in the figures.
DOI: 10.7284/141309
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise PE21-05 using a SeaBird SBE-911+ instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5066/p9vy95kt
title: Characterization of the Impact of Agricultural Conservation Practices on Natural Resource Concerns in the Chesapeake Bay Watershed

description: The U.S. Department of Agriculture Natural Resources Conservation Service (NRCS) provides funding and technical assistance for the implementation of practices that enable people to conserve, maintain, or improve soil, water, and related natural resources. NRCS conservation practices, or best management practices, relate the conservation practices to conservation practice physical effects (CPPE). Physical effects are listed in the data and purpose and include effects such as nutrients and pesticides transported to surface and/or groundwater. The CPPE is published in the NRCS Field Office Technical Guide and is listed in the sources section. NRCS's CPPE includes a limited set of practices. All practices that do not have an NRCS-assigned CPPE were evaluated using NRCS practice standard criteria and required enhancements to determine the most comparable practice that with an assigned CPPE. The CPPE categories are ranked on a scale of -5 to +5. These rankings are categorical and indicate a range from substantial worsening (-5) to substantial improvement (+5) with zero indicating no effect. NRCS conservation practice data are available to USGS researchers via a data sharing agreement.
DOI: 10.17632/y4md2yc2kj.1
title: Data for JUE Insight: Using the Mode to Test for Selection in City Size Wage Premia

description: Replication folder including data and code for JUE Insight: Using the Mode to Test for Selection in City Size Wage Premia
DOI: 10.7284/141274
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise PE20-25 using a SeaBird SBE-911+ instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.7054858
title: Urine Metabolome Dynamics Discriminate Influenza Vaccination Response

description: Overall global metabolomics data associated with publication
DOI: 10.5281/zenodo.7054857
title: Urine Metabolome Dynamics Discriminate Influenza Vaccination Response

description: Overall global metabolomics data associated with publication