cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10259948
title: Supplementary Material for: Brain-Derived Neurotrophic Factor and Supraoptic Vasopressin Neurons in Hyponatremia

description: Hyponatremia due to elevated arginine vasopressin (AVP) secretion increases mortality in liver failure patients. The mechanisms causing dysregulation of AVP secretion are unknown. Our hypothesis is that inappropriate AVP release associated with liver failure is due to increased brain-derived neurotrophic factor (BDNF) in the supraoptic nucleus (SON). BDNF diminishes GABA<sub>A</sub> inhibition in SON AVP neurons by increasing intracellular chloride through tyrosine receptor kinase B (TrkB) activation and downregulation of K+/Cl– cotransporter 2 (KCC2). This loss of inhibition could increase AVP secretion. This hypothesis was tested using shRNA against BDNF (shBDNF) in the SON in bile duct ligated (BDL) male rats. All BDL rats had significantly increased liver weight (<i>p</i> &lt; 0.05; 6–9) compared to shams. BDL rats with control ­shRNA injections (BDL scrambled [SCR]) developed hyponatremia with increased plasma AVP and copeptin (CPP; all <i>p</i> &lt; 0.05; 6–9) compared to sham groups. This is the first study to show that phosphorylation of TrkB is significantly increased along with significant decrease in phosphorylation of KCC2 in BDL SCR rats compared to the sham rats (<i>p</i> &lt; 0.05;6–8). Knockdown of BDNF in the SON of BDL rats (BDL shBDNF) significantly increased plasma osmolality and hematocrit compared to BDL SCR rats (<i>p</i> &lt; 0.05; 6–9). The BDL shBDNF rats had significant (<i>p</i> &lt; 0.05; 6–9) decreases in plasma AVP and CPP concentration compared to BDL SCR rats. The BDNF knockdown also significantly blocked the increase in TrkB phosphorylation and decrease in KCC2 phosphorylation (<i>p</i> &lt; 0.05; 6–8). The results indicate that BDNF produced in the SON contributes to increased AVP secretion and hyponatremia during liver failure.
DOI: 10.6084/m9.figshare.10259885
title: Data from: Errors in egg laying by female Common Cuckoo Cuculus canorus in nests of its common host

description: Variables entering the analyses of Cuckoo laying errors and fate of Cuckoo eggs: study year, no. of nest within each year, Cuckoo egg laying date (laydate), no. of the Cuckoo egg laid within the host nest (egg no.), laying order of the Cuckoo egg (order; decimals express that Cuckoo eggs were laid on one of the two consecutive days – exact day unknown), acceptance of the Cuckoo egg (0 – rejected, 1 – accepted), laying error of the Cuckoo (0 – no error, 1 – an erroneously laid Cuckoo egg), number of host nests available for parasitism (availability), parasitism rate in 5-day periods (par. rate) and host laying synchrony.
DOI: 10.6084/m9.figshare.10259870
title: Genomic data of P. fluorescens HKI0874 and P. jessenii EC-S101

description: Genomic data of <i>P. fluorescens </i>HKI0874 and <i>P. jessenii</i> EC-S101
DOI: 10.6084/m9.figshare.10259885.v1
title: Data from: Errors in egg laying by female Common Cuckoo Cuculus canorus in nests of its common host

description: Variables entering the analyses of Cuckoo laying errors and fate of Cuckoo eggs: study year, no. of nest within each year, Cuckoo egg laying date (laydate), no. of the Cuckoo egg laid within the host nest (egg no.), laying order of the Cuckoo egg (order; decimals express that Cuckoo eggs were laid on one of the two consecutive days – exact day unknown), acceptance of the Cuckoo egg (0 – rejected, 1 – accepted), laying error of the Cuckoo (0 – no error, 1 – an erroneously laid Cuckoo egg), number of host nests available for parasitism (availability), parasitism rate in 5-day periods (par. rate) and host laying synchrony.
DOI: 10.6084/m9.figshare.10259858
title: Snare locations in Soysambu Conservancy

description: Snare positions in Soysambu Conservancy, Kenya. <br><br>In R programming language:<br>library(spatstat)<br>load("snares.rda")plot(snares)plot(snares, which.marks="cat")<br>
DOI: 10.6084/m9.figshare.10259870.v1
title: Genomic data of P. fluorescens HKI0874 and P. jessenii EC-S101

description: Genomic data of <i>P. fluorescens </i>HKI0874 and <i>P. jessenii</i> EC-S101
DOI: 10.6084/m9.figshare.10259846
title: Data (Part I) for 'Dynamic allometry in coastal overwash morphology'

description: These data accompany the article 'Dynamic allometry in coastal overwash morphology' (Lazarus <i>et al</i>., 2019).<br><b>Table 1</b> includes the trial number, image date, image number, image time, total elapsed time for trial, time as percentage of the overall trial duration, washover feature ID (for tracking individual features between images, washover area (m<sup>2</sup>), washover length (m), washover position alongshore (m), and spacing between adjacent washovers (m).<br><br><b>Table 2</b> includes an index reference, percent experimental run time, area (m<sup>2</sup>), and length (m) for five individual deposits in which we track morphometric change during an experimental trial. (See Fig. 5 of the corresponding article.)<br><b>Table 3 </b>includes year, washover area (m<sup>2</sup>), and washover length (m) for deposits along Core Banks, North Carolina, USA, measured in aerial imagery (via Google Earth) from 1993, 2005, and 2011. (See Fig. 1 of the corresponding article.)<br>See also [https://doi.org/10.6084/m9.figshare.10281902] for related data on Ria Formosa, Portugal.<br>
DOI: 10.6084/m9.figshare.10259858.v2
title: Snare locations in Soysambu Conservancy

description: Snare positions in Soysambu Conservancy, Kenya. <br><br>In R programming language:<br>library(spatstat)<br>load("snares.rda")plot(snares)plot(snares, which.marks="cat")<br>
DOI: 10.6084/m9.figshare.10259858.v1
title: Snare locations in Soysambu Conservancy

description: Snare positions in Soysambu Conservancy, Kenya. <br><br>In R programming language:<br>library(spatstat)<br>load("snares.rda")plot(snares)plot(snares, which.marks="cat")<br>
DOI: 10.6084/m9.figshare.10259774
title: Absorption

description: The absorbance spectra from 28 trials per stiff fraction per TBHP treatment with independently stained platelets were loaded onto multiple 96-well plates. Each well contained a total volume of 100 microliter of reconstituted whole blood with 30% tank hematocrit, which corresponds to a sample path length of 3.108 mm. The plates were measured using a Synergy H1 - BioTek microplate reader. The absorbance spectra was analyzed over a range of wavelengths from 600 to 700nm, including the peak emission of the platelet fluorescence (660nm). An ipython jupyter notebook is included to display the data.
DOI: 10.6084/m9.figshare.10259783
title: Simulation configuration files

description: Simulation configuration files for single sheared cell, cell pair collisions, and bulk straight vessel simulations. the open sourced software HemoCell, and documentation, can be found here https://www.hemocell.eu/. The cell initialisations and stiffened RBC models are included in this dataset. The compiled hemocell library is required for the files provided in this dataset.
DOI: 10.6084/m9.figshare.10259783.v1
title: Simulation configuration files

description: Simulation configuration files for single sheared cell, cell pair collisions, and bulk straight vessel simulations. the open sourced software HemoCell, and documentation, can be found here https://www.hemocell.eu/. The cell initialisations and stiffened RBC models are included in this dataset. The compiled hemocell library is required for the files provided in this dataset.
DOI: 10.6084/m9.figshare.10259774.v1
title: Absorption

description: The absorbance spectra from 28 trials per stiff fraction per TBHP treatment with independently stained platelets were loaded onto multiple 96-well plates. Each well contained a total volume of 100 microliter of reconstituted whole blood with 30% tank hematocrit, which corresponds to a sample path length of 3.108 mm. The plates were measured using a Synergy H1 - BioTek microplate reader. The absorbance spectra was analyzed over a range of wavelengths from 600 to 700nm, including the peak emission of the platelet fluorescence (660nm). An ipython jupyter notebook is included to display the data.
DOI: 10.6084/m9.figshare.10259672
title: Data for 'How to promote ‘discipline without tough-love’ during pregnancy'.

description: Maternal characteristics and effect of the leaflet on maternal feeling at one month after delivery.<br>
DOI: 10.6084/m9.figshare.10259660
title: Unigene set of the antennal transcriptome of Coccinella septempunctata (Coleoptera: Coccinellinae)

description: Unigene set of the antennal transcriptome of Coccinella septempunctata (Coleoptera: Coccinellinae)
DOI: 10.6084/m9.figshare.10259672.v1
title: Data for 'How to promote ‘discipline without tough-love’ during pregnancy'.

description: Maternal characteristics and effect of the leaflet on maternal feeling at one month after delivery.<br>
DOI: 10.6084/m9.figshare.10259639
title: Phenological patterns and pollination network structure in a Venezuelan páramo: a community-scale perspective on plant-animal interactions

description: <b>Background</b>: Little information is available about life history of páramo plants such as phenology and plant-animal interactions. <b>Aims</b>: We analysed phenological patterns of flowering and characterised the structure of a plant-pollinator network in a Venezuelan páramo in order to identify key species in this ecosystem. <b>Methods</b>: We counted the number of individuals with flowers of 76 native plant species and recorded their pollinators in 16 permanent plots between 3000 and 4200 m monthly for three years. We used this dataset to develop a plant-pollinator network, on which nine different metrics related to structural properties were calculated. <b>Results</b>: The flowering of most species concentrated during the rainy season (between May and November), however some species have continuous flowering. The guild of floral visitors included hummingbirds, flower piercers, bumblebees, Diptera and Lepidoptera. The plant – flower visitor interaction network did not exhibit nestedness, but showed a significant specialization index (H2) and high values of functional complementarity. <b>Conclusions</b>: Páramo plants have the capacity of maintaining a resident nectarivorus fauna (bumblebees and hummingbirds) because of continuous flower offer during the year. However, the plant – pollinator network identified could be very sensitive to the loss component species, owing to high levels of specialisation and functional complementarity.
DOI: 10.6084/m9.figshare.10259660.v1
title: Unigene set of the antennal transcriptome of Coccinella septempunctata (Coleoptera: Coccinellinae)

description: Unigene set of the antennal transcriptome of Coccinella septempunctata (Coleoptera: Coccinellinae)
DOI: 10.6084/m9.figshare.10259567
title: Shared data for a study titled "Latitudes mediate the association between influenza activity and meteorological factors: A nationwide modelling analysis in 45 Japanese prefectures from 2000 to 2018"

description: This is the shared data for a study titled "Latitudes mediate the association between influenza activity and meteorological factors: A nationwide modelling analysis in 45 Japanese prefectures from 2000 to 2018"
DOI: 10.6084/m9.figshare.10259588.v1
title: Tidal common reeds in the Yellow River Delta responding to salt stress_Salt stress treatment

description: Tidal common reed (T) in Yellow River Delta responding to salt stress. T300:（0mmol/L NaCl treatment）：T7, T15, T18.
DOI: 10.6084/m9.figshare.10259567.v1
title: Shared data for a study titled "Latitudes mediate the association between influenza activity and meteorological factors: A nationwide modelling analysis in 45 Japanese prefectures from 2000 to 2018"

description: This is the shared data for a study titled "Latitudes mediate the association between influenza activity and meteorological factors: A nationwide modelling analysis in 45 Japanese prefectures from 2000 to 2018"
DOI: 10.6084/m9.figshare.10259540
title: Improving operational flood forecasting in monsoon climates with bias-corrected quantitative forecasting of precipitation

description: For flood-prone countries subject to large-scale and seasonal flooding, precipitation forecasting is the single most important factor for improving the skill of flood forecasting for such large river basins dominated by the monsoon. Several flood forecasting agencies in South and Southeast Asia, where monsoon floods dominate (e.g. Bangladesh, Pakistan, India, Thailand and Vietnam), are currently using quantitative precipitation forecast (QPF) from numerical weather prediction (NWP) models. Although there are numerous studies reported in the literature to evaluate QPF precipitation performance, there appears to be lack of studies about the impact on the flood forecasting skill. In this study, we demonstrate tangible improvements in flood forecasting based on NWP precipitation forecast using an approach that is operationally feasible in resource-limited settings of many flood agencies. Our improvement is based on a bias correction methodology for enhancing the skill of QPF using observed and QPF climatology. The proposed approach can be applied to any type of QPF dataset such as those dynamically downscaled from regional NWP. We demonstrate clear and consistent improvement in the enhancement of flood forecasting skill at longer lead times of up to 7 days in three river basins of Ganges, Brahmaputra and Mekong by about 50% (reduction in RMSE) or 25% improvement in correlation when compared to the forecasts obtained from uncorrected QPF. Furthermore, our proposed bias correction methodology yields significantly higher skill improvement in flood forecast for global (non-downscaled) QPF than those dynamically downscaled QPFs for the macroscale hydrologic model used for forecasting stream flows. The simplicity of the QPF bias correction methodology along with the numerical efficiency can be of tremendous appeal to operational flood forecasting agencies of the developing world faced with large-scale monsoonal flooding and limited computational resources and time for disaster response.
DOI: 10.6084/m9.figshare.10259567.v3
title: Shared data for a study titled "Latitudes mediate the association between influenza activity and meteorological factors: A nationwide modelling analysis in 45 Japanese prefectures from 2000 to 2018"

description: This is the shared data for a study titled "Latitudes mediate the association between influenza activity and meteorological factors: A nationwide modelling analysis in 45 Japanese prefectures from 2000 to 2018"
DOI: 10.6084/m9.figshare.10259567.v2
title: Shared data for a study titled "Latitudes mediate the association between influenza activity and meteorological factors: A nationwide modelling analysis in 45 Japanese prefectures from 2000 to 2018"

description: This is the shared data for a study titled "Latitudes mediate the association between influenza activity and meteorological factors: A nationwide modelling analysis in 45 Japanese prefectures from 2000 to 2018"
DOI: 10.6084/m9.figshare.10259540.v1
title: Improving operational flood forecasting in monsoon climates with bias-corrected quantitative forecasting of precipitation

description: For flood-prone countries subject to large-scale and seasonal flooding, precipitation forecasting is the single most important factor for improving the skill of flood forecasting for such large river basins dominated by the monsoon. Several flood forecasting agencies in South and Southeast Asia, where monsoon floods dominate (e.g. Bangladesh, Pakistan, India, Thailand and Vietnam), are currently using quantitative precipitation forecast (QPF) from numerical weather prediction (NWP) models. Although there are numerous studies reported in the literature to evaluate QPF precipitation performance, there appears to be lack of studies about the impact on the flood forecasting skill. In this study, we demonstrate tangible improvements in flood forecasting based on NWP precipitation forecast using an approach that is operationally feasible in resource-limited settings of many flood agencies. Our improvement is based on a bias correction methodology for enhancing the skill of QPF using observed and QPF climatology. The proposed approach can be applied to any type of QPF dataset such as those dynamically downscaled from regional NWP. We demonstrate clear and consistent improvement in the enhancement of flood forecasting skill at longer lead times of up to 7 days in three river basins of Ganges, Brahmaputra and Mekong by about 50% (reduction in RMSE) or 25% improvement in correlation when compared to the forecasts obtained from uncorrected QPF. Furthermore, our proposed bias correction methodology yields significantly higher skill improvement in flood forecast for global (non-downscaled) QPF than those dynamically downscaled QPFs for the macroscale hydrologic model used for forecasting stream flows. The simplicity of the QPF bias correction methodology along with the numerical efficiency can be of tremendous appeal to operational flood forecasting agencies of the developing world faced with large-scale monsoonal flooding and limited computational resources and time for disaster response.
DOI: 10.6084/m9.figshare.10259270
title: MOESM7 of A novel gene from a secondary metabolism gene cluster is required for microsclerotia formation and virulence in Verticillium dahliae

description: Additional file 7: Table S1. Primers used in this study. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.10259276
title: Adherence to the Mediterranean diet pattern among university staff: a cross-sectional web-based epidemiological study in Southern Italy

description: In this cross-sectional web-survey, carried out in 340 employees (24–67 years) among university staff of Southern Italy, we assessed the adherence to the Mediterranean Diet (MD). Using an online questionnaire based on validated 14-point MD Adherence Screener (MEDAS), the mean of the score was 7.34 (±1.9) for total population independently of sex. In population divided by the cut-off age of 45 years, MD adherence resulted significantly lower in younger respect to older group (<i>p</i> = .003). In multiple regression analyses we observed the direct association between MEDAS score and older age group also after adjustments. Importantly, in all sample the percentage of adherers to recommendations for fruits, nuts and fish resulted outside dietary guidelines. The present findings underscore the need to develop healthy education programmes aimed to improve the consumption of several components of the MD, particularly among young adults, in order to prevent the early onset of chronic non-transmittable diseases.
DOI: 10.6084/m9.figshare.10259276.v1
title: Adherence to the Mediterranean diet pattern among university staff: a cross-sectional web-based epidemiological study in Southern Italy

description: In this cross-sectional web-survey, carried out in 340 employees (24–67 years) among university staff of Southern Italy, we assessed the adherence to the Mediterranean Diet (MD). Using an online questionnaire based on validated 14-point MD Adherence Screener (MEDAS), the mean of the score was 7.34 (±1.9) for total population independently of sex. In population divided by the cut-off age of 45 years, MD adherence resulted significantly lower in younger respect to older group (<i>p</i> = .003). In multiple regression analyses we observed the direct association between MEDAS score and older age group also after adjustments. Importantly, in all sample the percentage of adherers to recommendations for fruits, nuts and fish resulted outside dietary guidelines. The present findings underscore the need to develop healthy education programmes aimed to improve the consumption of several components of the MD, particularly among young adults, in order to prevent the early onset of chronic non-transmittable diseases.
DOI: 10.6084/m9.figshare.10259270.v1
title: MOESM7 of A novel gene from a secondary metabolism gene cluster is required for microsclerotia formation and virulence in Verticillium dahliae

description: Additional file 7: Table S1. Primers used in this study. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.10259171
title: MOESM2 of Socio-demographic and facility-based determinants of perceived quality of nutrition Services of Pregnant and Lactating Adolescent Girls in Trans-Mara east Sub-County, Narok County, Kenya

description: Additional file 2. These are the dataset supporting the conclusions of this article which is provided as Additional file 2: S2.
DOI: 10.6084/m9.figshare.10259171.v1
title: MOESM2 of Socio-demographic and facility-based determinants of perceived quality of nutrition Services of Pregnant and Lactating Adolescent Girls in Trans-Mara east Sub-County, Narok County, Kenya

description: Additional file 2. These are the dataset supporting the conclusions of this article which is provided as Additional file 2: S2.
DOI: 10.6084/m9.figshare.10259144
title: MOESM7 of MoMI-G: modular multi-scale integrated genome graph browser

description: Additional file 7: Table S4. Breakends in the opposite end of the CCDC6-RET inversion.
DOI: 10.6084/m9.figshare.10259147
title: MOESM8 of MoMI-G: modular multi-scale integrated genome graph browser

description: Additional file 8: Table S5. Called SVs in LC-2/ad nuclear DNA from Illumina reads.
DOI: 10.6084/m9.figshare.10259144.v1
title: MOESM7 of MoMI-G: modular multi-scale integrated genome graph browser

description: Additional file 7: Table S4. Breakends in the opposite end of the CCDC6-RET inversion.
DOI: 10.6084/m9.figshare.10259147.v1
title: MOESM8 of MoMI-G: modular multi-scale integrated genome graph browser

description: Additional file 8: Table S5. Called SVs in LC-2/ad nuclear DNA from Illumina reads.
DOI: 10.6084/m9.figshare.10259135
title: MOESM6 of MoMI-G: modular multi-scale integrated genome graph browser

description: Additional file 6: Table S3. Called SVs in LC-2/ad nuclear DNA from Nanopore reads.
DOI: 10.6084/m9.figshare.10259135.v1
title: MOESM6 of MoMI-G: modular multi-scale integrated genome graph browser

description: Additional file 6: Table S3. Called SVs in LC-2/ad nuclear DNA from Nanopore reads.
DOI: 10.6084/m9.figshare.10259126
title: MOESM5 of MoMI-G: modular multi-scale integrated genome graph browser

description: Additional file 5: Table S2. Summary of the Oxford Nanopore sequencing data of LC-2/ad.
DOI: 10.6084/m9.figshare.10259126.v1
title: MOESM5 of MoMI-G: modular multi-scale integrated genome graph browser

description: Additional file 5: Table S2. Summary of the Oxford Nanopore sequencing data of LC-2/ad.
DOI: 10.6084/m9.figshare.10259108
title: MOESM3 of MoMI-G: modular multi-scale integrated genome graph browser

description: Additional file 3: Table S1. List of MoMI-G features.
DOI: 10.6084/m9.figshare.10259108.v1
title: MOESM3 of MoMI-G: modular multi-scale integrated genome graph browser

description: Additional file 3: Table S1. List of MoMI-G features.
DOI: 10.6084/m9.figshare.10259075
title: MOESM10 of MoMI-G: modular multi-scale integrated genome graph browser

description: Additional file 10: Table S6. The modifications made to the original SequenceTubeMap.
DOI: 10.6084/m9.figshare.10259075.v1
title: MOESM10 of MoMI-G: modular multi-scale integrated genome graph browser

description: Additional file 10: Table S6. The modifications made to the original SequenceTubeMap.
DOI: 10.6084/m9.figshare.10258724
title: Tidal common reeds in the Yellow River Delta responding to salt stress_CK

description: Tidal common reed (T) in Yellow River Delta responding to salt stress. T0:（0mmol/L NaCl treatment）：T14, T23, T25.