cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gfwyun
title: Occurrence Download

description: A dataset containing 789 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chamaedorea tepejilote Liebm.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 789 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007332-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekc6fd
title: Occurrence Download

description: A dataset containing 2136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Balaenoptera musculus (Linnaeus, 1758)"
 ]
}

 The dataset includes 2136 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024356-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.msd9p8
title: Occurrence Download

description: A dataset containing 354 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myioborus pictus pictus",
 "Country is Mexico"
 ]
}

 The dataset includes 354 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007332-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fus3mf
title: Occurrence Download

description: A dataset containing 448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Colletia spinosissima J.F.Gmel.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 448 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037128-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdthfj
title: Occurrence Download

description: A dataset containing 3289 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melaleuca leucadendra (L.) L."
 ]
}

 The dataset includes 3289 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007332-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9x792h
title: Occurrence Download

description: A dataset containing 671 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.41_1",
 "TaxonKey is Ilex opaca Aiton"
 ]
}

 The dataset includes 671 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024375-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zp6gnt
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendrophidion paucicarinatum (Cope, 1894)"
 ]
}

 The dataset includes 86 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279505-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5np88b
title: Occurrence Download

description: A dataset containing 4324 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Pristimantis w-nigrum (Boettger, 1892))"
 ]
}

 The dataset includes 4324 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056680-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zlauay
title: Occurrence Download

description: A dataset containing 344885 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Anthoxanthum odoratum L."
 ]
}

 The dataset includes 344885 records from 464 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007333-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqb6n8
title: Occurrence Download

description: A dataset containing 1898 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((2.479608666666667 65.07073733333334, 2.479608666666667 82.15736799999999, -31.565747 82.15736799999999, -31.565747 65.07073733333334, 2.479608666666667 65.07073733333334))",
 "EventDate is 2019-03-01,2019-03-31"
 ]
}

 The dataset includes 1898 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019556-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bkcsbx
title: Occurrence Download

description: A dataset containing 68641 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Streptopelia turtur (Linnaeus, 1758)"
 ]
}

 The dataset includes 68641 records from 287 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007333-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3m8gbt
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Capuronianthus mahafalensis Leroy"
 ]
}

 The dataset includes 46 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019552-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.taa7d5
title: Occurrence Download

description: A dataset containing 14592 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melampyrum arvense L."
 ]
}

 The dataset includes 14592 records from 172 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007333-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3azuna
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acer morifolium Koidz."
 ]
}

 The dataset includes 204 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019567-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nrbqfz
title: Occurrence Download

description: A dataset containing 6191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 {
 "or" : [
 "TaxonKey is Armeria filicaulis subsp. alfacarensis Nieto Fel., Gut.Larena & Fuertes",
 "TaxonKey is Armeria euscadiensis Donad. & Vivant",
 "TaxonKey is Armeria velutina Boiss. & Reut.",
 "TaxonKey is Armeria sampaioi (Bernis) Nieto Fel.",
 "TaxonKey is Armeria ruscinonensis Girard",
 "TaxonKey is Armeria rouyana Daveau",
 "TaxonKey is Armeria quichiotis (Gonz.Albo) A.W.Hill",
 "TaxonKey is Armeria pauana (Bernis) Nieto Fel.",
 "TaxonKey is Armeria cantabrica subsp. vasconica (Sennen) Uribe-Ech.",
 "TaxonKey is Armeria neglecta Girard",
 "TaxonKey is Armeria caballeroi (Bernis) Donad.",
 "TaxonKey is Armeria bigerrensis subsp. microcephala (Willk.) Nieto Fel.",
 "TaxonKey is Parietaria filamentosa Webb & Berthel.",
 "TaxonKey is Urtica stachyoides Webb & Berthel.",
 "TaxonKey is Gaudinia hispanica Stace & T.G.Tutin",
 "TaxonKey is Elymus curvifolius (Lange) Melderis",
 "TaxonKey is Parapholis marginata Runemark",
 "TaxonKey is Phalaris maderensis (Menezes) Menezes",
 "TaxonKey is Vulpia fontquerana Melderis & Stace",
 "TaxonKey is Erica scoparia subsp. platycodon (Webb & Berthel.) A.Hansen & G.Kunkel",
 "TaxonKey is Erica scoparia subsp. azorica (Hochst. ex Seub.) D.A.Webb",
 "TaxonKey is Sedum lagascae Pau",
 "TaxonKey is Sedum forsterianum Sm.",
 "TaxonKey is Calendula maderensis DC.",
 "TaxonKey is Jacobaea vulgaris subsp. gotlandica (Neuman) B.Nord.",
 "TaxonKey is Crepis tectorum subsp. nigrescens (Pohle) P.D.Sell",
 "TaxonKey is Leucanthemum ircutianum subsp. pseudosylvaticum Vogt",
 "TaxonKey is Asteriscus graveolens subsp. stenophyllus (Link) Greuter",
 "TaxonKey is Asteriscus graveolens subsp. odorus (Schousb.) Greuter",
 "TaxonKey is Ceterach aurea (Cav.) Buch",
 "TaxonKey is Phyllitis sagittata (Sw.) Guinea & Heywood",
 "TaxonKey is Elatine brochonii Clavaud",
 "TaxonKey is Ilex perado subsp. platyphylla (Webb & Berthel.) Tutin",
 "TaxonKey is Olea europaea subsp. oleaster (Hoffmanns. & Link) Negodi",
 "TaxonKey is Centaurea bombycina subsp. bombycina",
 "TaxonKey is Carlina acanthifolia subsp. cynara (DC.) Arcang.",
 "TaxonKey is Crambe gomerae H.Christ",
 "TaxonKey is Angelica heterocarpa M.J.Lloyd",
 "TaxonKey is Pastinaca sativa subsp. sylvestris (Mill.) Rouy & Camus",
 "TaxonKey is Viola montcaunica Pau"
 ]
 }
 ]
}

 The dataset includes 6191 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007336-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6abghn
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trichilia ulei C.DC."
 ]
}

 The dataset includes 13 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019511-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgxngu
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pogonomyrmex desertorum Wheeler, 1902",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 50 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007334-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j7wj46
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odyendea gabunensis (Pierre) Engl."
 ]
}

 The dataset includes 216 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019557-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqfrww
title: Occurrence Download

description: A dataset containing 3361 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myiopagis viridicata (Vieillot, 1817)",
 "Country is Mexico"
 ]
}

 The dataset includes 3361 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007334-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2dnas5
title: Occurrence Download

description: A dataset listing the 346 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (IDN, MYS)",
 "OccurrenceStatus is Present",
 "TaxonKey is Elasmobranchii"
 ]
}

 The dataset's 346 records were derived from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019553-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqvdcy
title: Occurrence Download

description: A dataset containing 98229 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is BLS Lichen Database: Wales 1650-2016"
 ]
}

 The dataset includes 98229 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010959-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ksjwj
title: Occurrence Download

description: A dataset containing 12809 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calystegia silvatica (Kit.) Griseb.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 12809 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011547-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m1xks8
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melocactus deinacanthus Buining & Brederoo",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010959-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10926698
title: Leveraging interindividual variability in threat conditioning of inbred mice to model trait anxiety

description: Abstact

Trait anxiety is a major risk factor for stress-induced and anxiety disorders in humans. However, animal models accounting for the inter-individual variability in stress vulnerability are largely lacking. Moreover, the pervasive bias of using mostly male animals in preclinical studies poorly reflects the increased prevalence of psychiatric disorders in women. Using the threat imminence continuum theory, we designed and validated an auditory aversive conditioning-based pipeline in both female and male mice. We operationalized trait anxiety by harnessing the naturally occurring variability of defensive freezing responses combined with a model-based clustering strategy. While sustained freezing during prolonged retrieval sessions was identified as an anxiety-endophenotype biomarker in both sexes, females were consistently associated with an increased freezing response. RNA-sequencing of CeA, BLA, ACC and BNST revealed massive differences in phasic and sustained responders’ transcriptomes, correlating with transcriptomic signatures of psychiatric disorders, particularly PTSD. Moreover, we detected significant alterations in the excitation/inhibition balance of principal neurons in the lateral amygdala. These findings provide compelling evidence that trait anxiety in inbred mice can be leveraged to develop translationally relevant preclinical models to investigate mechanisms of stress susceptibility in a sex-specific manner.

Remarks

This submission contains the analysis code and source data to fully reproduce the behavioural, electrophysiology and RNA-seq analysis described in Kovlyagina et al. 

 - Navigate to the behaviour_ephys directory and run the scripts to reproduce the behavioural and electrophysiology analysis

- Navigate to the RNAseq directory and run the script to reproduce the RNA-seq analysis
DOI: 10.15468/dl.u5dpu9
title: Occurrence Download

description: A dataset containing 129 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Symposiachrus mundus (P.L.Sclater, 1883)"
 ]
}

 The dataset includes 129 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003988-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10926697
title: Leveraging interindividual variability in threat conditioning of inbred mice to model trait anxiety

description: Abstact

Trait anxiety is a major risk factor for stress-induced and anxiety disorders in humans. However, animal models accounting for the inter-individual variability in stress vulnerability are largely lacking. Moreover, the pervasive bias of using mostly male animals in preclinical studies poorly reflects the increased prevalence of psychiatric disorders in women. Using the threat imminence continuum theory, we designed and validated an auditory aversive conditioning-based pipeline in both female and male mice. We operationalized trait anxiety by harnessing the naturally occurring variability of defensive freezing responses combined with a model-based clustering strategy. While sustained freezing during prolonged retrieval sessions was identified as an anxiety-endophenotype biomarker in both sexes, females were consistently associated with an increased freezing response. RNA-sequencing of CeA, BLA, ACC and BNST revealed massive differences in phasic and sustained responders’ transcriptomes, correlating with transcriptomic signatures of psychiatric disorders, particularly PTSD. Moreover, we detected significant alterations in the excitation/inhibition balance of principal neurons in the lateral amygdala. These findings provide compelling evidence that trait anxiety in inbred mice can be leveraged to develop translationally relevant preclinical models to investigate mechanisms of stress susceptibility in a sex-specific manner.

Remarks

This submission contains the analysis code and source data to fully reproduce the behavioural, electrophysiology and RNA-seq analysis described in Kovlyagina et al. 

 - Navigate to the behaviour_ephys directory and run the scripts to reproduce the behavioural and electrophysiology analysis

- Navigate to the RNAseq directory and run the script to reproduce the RNA-seq analysis
DOI: 10.15468/dl.h4pv8e
title: Occurrence Download

description: A dataset containing 19809 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dermochelys coriacea (Vandelli, 1761)",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 19809 records from 273 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021760-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vxtuz4
title: Occurrence Download

description: A dataset containing 27490706 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia"
 ]
}

 The dataset includes 27490706 records from 3629 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021788-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11198445
title: Monitoring and benchmarking Earth system model simulations with ESMValTool v2.12.0

description: This dataset contains the EMAC model output and the ESMValTool recipes used to created the figures of

Lauer, A., L. Bock, B. Hassler, P. Jöckel, L. Ruhe, and M. Schlund: Monitoring and benchmarking Earth system model simulations with ESMValTool v2.12.0, submitted to Geosci. Model Dev.

The files in emac_3hr.tar.gz contain 3-hourly data from the EMAC simulation used for figure 4 (diurnal cycles).

The files in emac_Amon.tar.gz contain monthly mean data from the EMAC simulation used for figures 1, 2, 3, 5, 6, 7, 8 (time series, seasonal cycles, map plots, zonal mean plots, box plots, portrait diagram).

The ESMValTool recipes used to produces these figures are contained in esmvaltool_recipes.tar.gz and can be used with Earth System Model Evaluation Tool v2.12.0 available on GitHub at https://github.com/ESMValGroup/ESMValTool or on Zenodo at https://zenodo.org/records/10408909.
DOI: 10.5281/zenodo.11198444
title: Monitoring and benchmarking Earth system model simulations with ESMValTool v2.12.0

description: This dataset contains the EMAC model output and the ESMValTool recipes used to created the figures of

Lauer, A., L. Bock, B. Hassler, P. Jöckel, L. Ruhe, and M. Schlund: Monitoring and benchmarking Earth system model simulations with ESMValTool v2.12.0, Geosci. Model Dev. (accepted).

The files in emac_3hr.tar.gz contain 3-hourly data from the EMAC simulation used for figure 4 (diurnal cycles).

The files in emac_Amon.tar.gz contain monthly mean data from the EMAC simulation used for figures 1, 2, 3, 5, 6, 7, 8 (time series, seasonal cycles, map plots, zonal mean plots, box plots, portrait diagram).

The ESMValTool recipes used to produces these figures are contained in esmvaltool_recipes_v2.tar.gz and can be used with Earth System Model Evaluation Tool v2.12.0 available on GitHub at https://github.com/ESMValGroup/ESMValTool or on Zenodo at https://doi.org/10.5281/zenodo.3401363.
DOI: 10.5281/zenodo.14745136
title: Monitoring and benchmarking Earth system model simulations with ESMValTool v2.12.0

description: This dataset contains the EMAC model output and the ESMValTool recipes used to created the figures of

Lauer, A., L. Bock, B. Hassler, P. Jöckel, L. Ruhe, and M. Schlund: Monitoring and benchmarking Earth system model simulations with ESMValTool v2.12.0, Geosci. Model Dev. (accepted).

The files in emac_3hr.tar.gz contain 3-hourly data from the EMAC simulation used for figure 4 (diurnal cycles).

The files in emac_Amon.tar.gz contain monthly mean data from the EMAC simulation used for figures 1, 2, 3, 5, 6, 7, 8 (time series, seasonal cycles, map plots, zonal mean plots, box plots, portrait diagram).

The ESMValTool recipes used to produces these figures are contained in esmvaltool_recipes_v2.tar.gz and can be used with Earth System Model Evaluation Tool v2.12.0 available on GitHub at https://github.com/ESMValGroup/ESMValTool or on Zenodo at https://doi.org/10.5281/zenodo.3401363.
DOI: 10.15468/dl.udj3xa
title: Occurrence Download

description: A dataset listing the 61 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Protocole de recensement des collisions entre la faune sauvage et les véhicules de la Direction interdépartementale des routes Centre-Est - Données de mortalité de la faune par collision avec les véhicules sur le réseau routier de la DIR Centre-Est"
 ]
}

 The dataset's 61 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004538-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m3htce
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudocaranx cheilio (Snyder, 1904)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004552-250123221155621/datasets/export for details.