cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25922278
title: Physiological and transcriptomic profiles of tobacco seedling leaves in response to high chloride accumulation

description: Tobacco is a special commercial crop that prefers potassium but not chlorine, and excessive chloride (Cl<sup>–</sup>) accumulation can cause toxicity. Here, we revealed that the structural characteristics of chloroplasts in tobacco leaves were significantly destroyed under high Cl<sup>–</sup> salinity, but not mitochondria. Large differences in leaf structure, MDA content, and antioxidant enzyme activities were observed for the treatment with highest chloride accumulation at the 14th day. Moreover, RNA-seq analysis of tobacco leaves exposed to high Cl<sup>–</sup> salinity revealed global changes in gene transcription levels. A total of 1360 DEGs involved in cell wall, lipid, starch, and secondary metabolism processes were unevenly distributed on chromosomes, and were mainly enriched for starch and sucrose metabolism, phenylpropanoid biosynthesis, ribosome and ribosome biogenesis, protein processing in the endoplasmic reticulum, and plant hormone signal transduction pathways. Overall, our study provides valuable insights for further research on the mechanism underlying Cl<sup>–</sup> salinity and salt-tolerant tobacco development.
DOI: 10.6084/m9.figshare.26861665.v1
title: Transcriptome analysis of maize resistance to <i>Fusarium verticillioides</i>

description: Maize (<i>Zea mays</i>) is a crucial crop for both food and economic purposes. <i>Fusarium verticillioides</i> is known to cause ear rot in corn, leading to a reduction in corn yield. Understanding the regulatory network of maize resistance to this ear rot is crucial for identifying key genes associated with disease resistance. The study revealed that inbred line J1259 exhibited resistance to <i>Fusarium verticillioides</i> by increasing the activities of POD and CAT enzymes. Transcriptome analysis at 48 and 96 hours post-infection with <i>Fusarium verticillioides</i> revealed a large number of DEGs involved in plant-pathogen interactions, MAPK signaling pathways-plants and plant hormone signaling were significant up-regulated. Additionally, transcription factors related to hormone signaling, particularly the ARF family involved in auxin regulation, were enriched. These results lay a foundation for further investigations into the mechanisms underlying the disease resistance response of J1259.
DOI: 10.6084/m9.figshare.24946751
title: Effects of seed coating and priming with exogenous brassinosteroid on tobacco seed germination

description: Brassinosteroid (BR) is a hormone known for its crucial role in seed germination promotion. However, there is a limited understanding of potential application in tobacco seed. In this study, we investigated various active ingredients for seed coating to enhance tobacco seed germination. It revealed that seed coating with 0.0500 ppm BR and priming with 0.01 ppm BR significantly increased seed germination rates, especially in low-temperature conditions. In addition, the combined use BR with priming and seed coating exhibited a substantial improvement in seed germination rates and promoted seedling growth. Through transcriptional analysis, it found that BR treatment regulates the expression of genes associated with DNA synthesis, cell wall organization and glucan metabolic process involved in seed dormancy and seedling growth. Overall, these results provide valuable insights into the utilization of seed coating and priming techniques, particularly with the inclusion of BR, to enhance tobacco seed germination and facilitate seedling emergence.
DOI: 10.6084/m9.figshare.24946751.v1
title: Effects of seed coating and priming with exogenous brassinosteroid on tobacco seed germination

description: Brassinosteroid (BR) is a hormone known for its crucial role in seed germination promotion. However, there is a limited understanding of potential application in tobacco seed. In this study, we investigated various active ingredients for seed coating to enhance tobacco seed germination. It revealed that seed coating with 0.0500 ppm BR and priming with 0.01 ppm BR significantly increased seed germination rates, especially in low-temperature conditions. In addition, the combined use BR with priming and seed coating exhibited a substantial improvement in seed germination rates and promoted seedling growth. Through transcriptional analysis, it found that BR treatment regulates the expression of genes associated with DNA synthesis, cell wall organization and glucan metabolic process involved in seed dormancy and seedling growth. Overall, these results provide valuable insights into the utilization of seed coating and priming techniques, particularly with the inclusion of BR, to enhance tobacco seed germination and facilitate seedling emergence.
DOI: 10.6084/m9.figshare.25922278.v1
title: Physiological and transcriptomic profiles of tobacco seedling leaves in response to high chloride accumulation

description: Tobacco is a special commercial crop that prefers potassium but not chlorine, and excessive chloride (Cl<sup>–</sup>) accumulation can cause toxicity. Here, we revealed that the structural characteristics of chloroplasts in tobacco leaves were significantly destroyed under high Cl<sup>–</sup> salinity, but not mitochondria. Large differences in leaf structure, MDA content, and antioxidant enzyme activities were observed for the treatment with highest chloride accumulation at the 14th day. Moreover, RNA-seq analysis of tobacco leaves exposed to high Cl<sup>–</sup> salinity revealed global changes in gene transcription levels. A total of 1360 DEGs involved in cell wall, lipid, starch, and secondary metabolism processes were unevenly distributed on chromosomes, and were mainly enriched for starch and sucrose metabolism, phenylpropanoid biosynthesis, ribosome and ribosome biogenesis, protein processing in the endoplasmic reticulum, and plant hormone signal transduction pathways. Overall, our study provides valuable insights for further research on the mechanism underlying Cl<sup>–</sup> salinity and salt-tolerant tobacco development.
DOI: 10.6084/m9.figshare.27373438
title: Comparative transcriptome analysis of tobacco plants reveals differences in reactive oxygen species activated defenses following the infestations of non-viruliferous and TYLCCNV-viruliferous whitefly Mediterranean

description: Tomato yellow leaf curl China virus (TYLCCNV) viruliferous Mediterranean (MED) whitefly infestation in tobacco plants elevated hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>) levels more than non-viruliferous ones. To unravel the underlying mechanisms behind the phenomenon, comparative analyses of plant transcriptome and enzyme activities of reactive oxygen species (ROS) scavengers were conducted in this study. Compared to the control, a total of 4032 and 6853 differentially expressed genes (DEGs) were identified in the plants following the infestations of non-viruliferous and TYLCCNV-viruliferous MED, respectively. Gene ontology analysis of DEGs suggested substantial transcriptional reprogramming of diverse cellular processes, particularly in the biotic stress response pathways of tobacco plants. Respiratory burst oxidase homologs related genes and important kinases putatively involved in plant defense were differentially modulated in tobacco plants in response to the non-viruliferous and TYLCCNV-viruliferous whitefly MED infestation. The analysis reported here lays out a strong foundation for future investigations into the mechanisms of ROS-associated plant defense mediating the interactions between <i>B. tabaci</i> and begomoviruses.
DOI: 10.6084/m9.figshare.26213833
title: Iron oxide nanoparticles alleviate salt-alkaline stress and improve growth by modulating antioxidant defense system in cherry tomato

description: The integration of nanoparticles (NPs) into agriculture is altering traditional methods, enhancing productivity and sustainability. This study explores the application of iron oxide nanoparticles (FeONPs) to mitigate salt-alkaline stress in cherry tomatoes. We investigated FeONPs at three concentrations (FeONP25, FeONP50, FeONP100 mg/kg soil) in pot experiments under non-stress (NS) and salt-alkaline stress (SAS) conditions. SAS conditions decreased biomass and nutrients in untreated plants, a trend reversed by FeONPs. FeONPs treatments significantly boosted pigment levels under SAS, thereby increasing chlorophyll a (10.65–43.05%), chlorophyll b (7.19–41.33%), total chlorophyll (9.84–42.49%), and carotenoids (8.97–36.09%) compared to the control. FeONPs also reduced NPQ under stress, indicating enhanced photosynthetic efficiency. Oxidative stress markers (H<sub>2</sub>O<sub>2,</sub> O₂<sup>−</sup>, and MDA) were strongly induced in control plants but significantly declined with FeONPs treatments. Antioxidants and osmoregulatory substances significantly improved with FeONPs, thereby demonstrating their potential to alleviate SAS in cherry tomato plants.
DOI: 10.6084/m9.figshare.26213833.v1
title: Iron oxide nanoparticles alleviate salt-alkaline stress and improve growth by modulating antioxidant defense system in cherry tomato

description: The integration of nanoparticles (NPs) into agriculture is altering traditional methods, enhancing productivity and sustainability. This study explores the application of iron oxide nanoparticles (FeONPs) to mitigate salt-alkaline stress in cherry tomatoes. We investigated FeONPs at three concentrations (FeONP25, FeONP50, FeONP100 mg/kg soil) in pot experiments under non-stress (NS) and salt-alkaline stress (SAS) conditions. SAS conditions decreased biomass and nutrients in untreated plants, a trend reversed by FeONPs. FeONPs treatments significantly boosted pigment levels under SAS, thereby increasing chlorophyll a (10.65–43.05%), chlorophyll b (7.19–41.33%), total chlorophyll (9.84–42.49%), and carotenoids (8.97–36.09%) compared to the control. FeONPs also reduced NPQ under stress, indicating enhanced photosynthetic efficiency. Oxidative stress markers (H<sub>2</sub>O<sub>2,</sub> O₂<sup>−</sup>, and MDA) were strongly induced in control plants but significantly declined with FeONPs treatments. Antioxidants and osmoregulatory substances significantly improved with FeONPs, thereby demonstrating their potential to alleviate SAS in cherry tomato plants.
DOI: 10.6084/m9.figshare.27373438.v1
title: Comparative transcriptome analysis of tobacco plants reveals differences in reactive oxygen species activated defenses following the infestations of non-viruliferous and TYLCCNV-viruliferous whitefly Mediterranean

description: Tomato yellow leaf curl China virus (TYLCCNV) viruliferous Mediterranean (MED) whitefly infestation in tobacco plants elevated hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>) levels more than non-viruliferous ones. To unravel the underlying mechanisms behind the phenomenon, comparative analyses of plant transcriptome and enzyme activities of reactive oxygen species (ROS) scavengers were conducted in this study. Compared to the control, a total of 4032 and 6853 differentially expressed genes (DEGs) were identified in the plants following the infestations of non-viruliferous and TYLCCNV-viruliferous MED, respectively. Gene ontology analysis of DEGs suggested substantial transcriptional reprogramming of diverse cellular processes, particularly in the biotic stress response pathways of tobacco plants. Respiratory burst oxidase homologs related genes and important kinases putatively involved in plant defense were differentially modulated in tobacco plants in response to the non-viruliferous and TYLCCNV-viruliferous whitefly MED infestation. The analysis reported here lays out a strong foundation for future investigations into the mechanisms of ROS-associated plant defense mediating the interactions between <i>B. tabaci</i> and begomoviruses.
DOI: 10.6084/m9.figshare.25448101
title: Physio-biochemical and transcriptomics analyses reveal molecular mechanisms of enhanced UV-B stress tolerance in rice induced by titanium dioxide nanoparticles

description: Rice (<i>Oryza sativa</i> L.) stands out as the world's most vital staple food crop, yet is susceptible to UV-B radiation stress. This study investigates the physiological and transcriptome responses in rice exposed to titanium dioxide nanoparticles (TiO<sub>2</sub> NPs) under UV-B radiation. Results demonstrate that TiO<sub>2</sub> NPs, applied alone (TN) or in combination with UV-B stress (UV+TN), significantly enhance rice plant growth and physiological parameters. Reactive oxygen species (ROS) levels, elevated under UV-B stress, are significantly reduced by TN and UV+TN treatments, thereby regulating antioxidants particularly involved in ascorbate-glutathione pathway. Transcriptomics analysis of identified DEGs in UV+TN, utilizing KEGG pathway analysis, reveals significant enrichment in various pathways. These pathways include glutathione metabolism, pyruvate metabolism, starch and sucrose metabolism, regulation of basal transcription factors, plant hormonal signal transduction pathways, cellular processes associated with energy, and the MAPK signaling pathway. Overall, TiO<sub>2</sub> NPs application modulates diverse biological and metabolic pathways, enhancing UV-B stress tolerance in rice.
DOI: 10.6084/m9.figshare.25448101.v1
title: Physio-biochemical and transcriptomics analyses reveal molecular mechanisms of enhanced UV-B stress tolerance in rice induced by titanium dioxide nanoparticles

description: Rice (<i>Oryza sativa</i> L.) stands out as the world's most vital staple food crop, yet is susceptible to UV-B radiation stress. This study investigates the physiological and transcriptome responses in rice exposed to titanium dioxide nanoparticles (TiO<sub>2</sub> NPs) under UV-B radiation. Results demonstrate that TiO<sub>2</sub> NPs, applied alone (TN) or in combination with UV-B stress (UV+TN), significantly enhance rice plant growth and physiological parameters. Reactive oxygen species (ROS) levels, elevated under UV-B stress, are significantly reduced by TN and UV+TN treatments, thereby regulating antioxidants particularly involved in ascorbate-glutathione pathway. Transcriptomics analysis of identified DEGs in UV+TN, utilizing KEGG pathway analysis, reveals significant enrichment in various pathways. These pathways include glutathione metabolism, pyruvate metabolism, starch and sucrose metabolism, regulation of basal transcription factors, plant hormonal signal transduction pathways, cellular processes associated with energy, and the MAPK signaling pathway. Overall, TiO<sub>2</sub> NPs application modulates diverse biological and metabolic pathways, enhancing UV-B stress tolerance in rice.
DOI: 10.15468/dl.kykj3u
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is Asia",
 "Country is Philippines",
 "DatasetKey is one of (CAS Herpetology (HERP), NMNH Extant Specimen Records (USNM, US), KUBI Herpetology Collection, The Herpetology Collection at the Staatliches Museum für Naturkunde Stuttgart)",
 "GadmGid is PHL.43_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (NT, LC)",
 "TaxonKey is Limnonectes magnus (Stejneger, 1910)"
 ]
}

 The dataset includes 31 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049904-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.apm.27987482
title: Supplemental file

description: SUPPLEMENTARY MATERIAL
DOI: 10.6084/m9.figshare.26761927
title: <b>Chromosome-scale whole genome assembly and annotation of the Jamaican field cricket </b><b><i>Gryllus assimilis</i></b>

description: <i>Gryllus assimilis</i>, commonly known as Jamaican field cricket, is an edible insect with significant economic value in sustainable food production. Despite its importance, a high-quality reference genome of <i>G. assimilis</i> has not yet been published. Here, we report a chromosome-level reference genome of <i>G. assimilis </i>based on Oxford Nanopore Technologies (ONT) sequencing, Illumina sequencing, and Hi-C technologies. The assembled genome has a total length of 1.60 Gbp with scaffold N50 of 102 Mbp, and 96.80% of the nucleotides was assigned to 15 chromosome-scale scaffolds. The assembly completeness was validated using BUSCO, achieving 99.5% completeness against the arthropoda database. We predicted 27,645 protein-coding genes, and 825 Mb repetitive elements were annotated in the reference genome. This reference genome of <i>G. assimilis </i>can provide a basis for the subsequent development of genomic resources, offering insights for future functional genomic studies, comparative genomics, and DNA-informed breeding of this species.
DOI: 10.60893/figshare.jap.27994103
title: Supplementary

description: Supplementary
DOI: 10.60893/figshare.jap.27994103.v1
title: Supplementary

description: Supplementary
DOI: 10.15468/dl.9sfsz3
title: Occurrence Download

description: A dataset containing 659 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "TaxonKey is Quercus canariensis Willd."
 ]
}

 The dataset includes 659 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049905-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.jcp.27997433
title: Supplementary Materials

description: Rayleigh and Raman scattering cross sections for all rovibrational transitions in the ground electronic state of molecular hydrogen.
DOI: 10.60893/figshare.jcp.27997433.v1
title: Supplementary Materials

description: Rayleigh and Raman scattering cross sections for all rovibrational transitions in the ground electronic state of molecular hydrogen.
DOI: 10.21227/bha3-2d69
title: A Simulated Remote Sensing Dataset Based on 1064nm Laser Illumination

description: Based on the analysis of laser characteristics, we have created a simulated dataset of near-infrared images of 1064nm laser spots. The spot collection process was carried out under natural light conditions. The divergence phenomenon during laser irradiation was excluded because the emitted 1064nm laser spots are adjustable. Without considering the energy loss of the laser in natural light and atmospheric turbulence, the collected near-infrared laser spot image information was reasonably spliced with images from the HRSC dataset, which includes target image information processed after laser irradiation. During the simulation experiment, it is necessary to ensure the accuracy and stability of the laser irradiation to guarantee that the collected image information has high clarity and accuracy. At the same time, for different types of target objects, such as aircraft, hulls, and vehicles, appropriate processing and recognition must be carried out according to their characteristics and shapes to ensure the authenticity and credibility of the composite images. Additionally, the design and adjustment of the optical path system must be considered to maximize image quality and resolution. The construction of this dataset is expected to fill the research gap in existing laser spot datasets for the 1064nm near-infrared band, providing richer data resources for related fields of study.
DOI: 10.15468/dl.zv3skj
title: Occurrence Download

description: A dataset containing 1752 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Calopteryx japonica Selys, 1869"
 ]
}

 The dataset includes 1752 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049907-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14561230
title: Complete Initial Data for TransProPyBook and TransProRBook: Full Reproduction Using Scripts from Both Manuals
DOI: 10.15468/dl.gjx9ng
title: Occurrence Download

description: A dataset containing 3828 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Anathallis Barb.Rodr.)"
 ]
}

 The dataset includes 3828 records from 221 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049908-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.crs7u6
title: Occurrence Download

description: A dataset containing 3595 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Vascular plants in Danish coastal meadows"
 ]
}

 The dataset includes 3595 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049909-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28099868
title: Annotation files of <i>Chrysoperla zastrowi sillemi</i>

description: The dataset contains the annotaion and GFF files of <i>Chrysoperla zastrowi sillemi</i>
DOI: 10.15468/dl.eba9rp
title: Occurrence Download

description: A dataset containing 11967 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is MUNTJAC_ANTWERP - Camera trap observations of Chinese muntjac in forested areas near Antwerp (Belgium)"
 ]
}

 The dataset includes 11967 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049910-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3xt8pf
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Alligator sinensis Fauvel, 1879"
 ]
}

 The dataset includes 139 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049911-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vwx43y
title: Occurrence Download

description: A dataset containing 18003 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is one of (March, April, May, June, July, August, September, October, November, December)",
 "OccurrenceStatus is Present",
 "TaxonKey is Clangula hyemalis (Linnaeus, 1758)",
 "Year 2010-2010"
 ]
}

 The dataset includes 18003 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049912-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6zuxr
title: Occurrence Download

description: A dataset containing 7688 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is one of (January, February)",
 "OccurrenceStatus is Present",
 "TaxonKey is Clangula hyemalis (Linnaeus, 1758)",
 "Year 2011-2011"
 ]
}

 The dataset includes 7688 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049914-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.