cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.sh44qv
title: Occurrence Download

description: A dataset containing 3471 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Mexico",
 "Country is United States of America"
 ]
 },
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Muhlenbergia fragilis Swallen",
 "TaxonKey is Eriochloa contracta Hitchc.",
 "TaxonKey is Eragrostis oxylepis (Torr.) Torr.",
 "TaxonKey is Bouteloua eriopoda (Torr.) Torr.",
 "TaxonKey is Bouteloua barbata Lag.",
 "TaxonKey is Andropogon saccharoides Sw.",
 "TaxonKey is Hoffmannseggia jamesii Torr. & A.Gray",
 "TaxonKey is Mimosa borealis A.Gray",
 "TaxonKey is Hoffmannseggia drepanocarpa A.Gray"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3471 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019491-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hiqawj
title: Occurrence Download

description: A dataset containing 783 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Iodes Blume",
 {
 "or" : [
 "Geometry POLYGON((-23.203125 25.799891,-23.203125 -28.304380,63.984375 -28.304380,63.984375 25.799891,-23.203125 25.799891))",
 "Geometry POLYGON((80.859374 30.145127,80.859374 -15.284185,177.890625 -15.284185,177.890625 30.145127,80.859374 30.145127))"
 ]
 }
 ]
}

 The dataset includes 783 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073154-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ral7gq
title: Occurrence Download

description: A dataset containing 9586 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-58.5833329989999 43.583332999,-59.1333330009999 43.583332999,-59.133333 43.694722,-59.1333329989999 43.9166670010001,-59.213194 43.989778,-59.3333329989999 44.1000000010001,-59.0999999989999 44.216667,-58.9754444449999 44.1125,-58.753 43.926,-58.583333 43.783333,-58.5833329989999 43.583332999))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9586 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019492-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7c5d3y
title: Occurrence Download

description: A dataset containing 2080 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vitex trifolia L."
 ]
}

 The dataset includes 2080 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024596-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jusxmc
title: Occurrence Download

description: A dataset containing 722 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Irvingia Hook.f.",
 {
 "or" : [
 "Geometry POLYGON((-21.09375 35.460669,-21.09375 -42.553080,68.90625 -42.553080,68.90625 35.460669,-21.09375 35.460669))",
 "Geometry POLYGON((85.078125 41.508577,85.078125 -7.710991,141.328125 -7.710991,141.328125 41.508577,85.078125 41.508577))"
 ]
 }
 ]
}

 The dataset includes 722 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073155-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.79f9g4
title: Occurrence Download

description: A dataset containing 259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-9.07045 44.65895,-10.24763 42.39179,-10.94522 36.68027,-7.06488 33.58472,-0.61217 34.63111,5.05574 41.08381,1.2626 44.74615,-9.07045 44.65895))",
 "TaxonKey is Carabus rutilans Dejean, 1826"
 ]
}

 The dataset includes 259 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021928-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.skrq2e
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panulirus inflatus (Bouvier, 1895)"
 ]
}

 The dataset includes 136 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019493-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4i04cx
title: Occurrence Download

description: A dataset containing 21214 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pachyramphus aglaiae (Lafresnaye, 1839)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 21214 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073156-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0ydmz3
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Puya maculata L.B.Sm."
 ]
}

 The dataset includes 22 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019501-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8n8f3m
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asphodeline tenuior (Fisch. ex M.Bieb.) Ledeb."
 ]
}

 The dataset includes 69 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018320-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nws3vx
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Malpighia higueyensis F.K.Mey."
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174687-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wt4w92
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptotes tenuis Rchb.f."
 ]
}

 The dataset includes 29 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174686-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.iocwni
title: Occurrence Download

description: A dataset containing 226225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-7.34 42.86,-7.34 43.65,-5.62 43.65,-5.62 42.86,-7.34 42.86))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 226225 records from 158 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073157-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pr5wyu
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aedes albopictus (Skuse, 1894)",
 "Year 2000-2023"
 ]
}

 The dataset includes 151 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019509-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7ezie
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Viburnum veitchii C.H.Wright",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 20 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019504-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3vam6f
title: Occurrence Download

description: A dataset containing 41891 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-16.38 41.70,-16.38 44.89,-9.49 44.89,-9.49 41.70,-16.38 41.70))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 41891 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073161-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k7ajjz
title: Occurrence Download

description: A dataset containing 175 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtochilum macranthum (Lindl.) Kraenzl."
 ]
}

 The dataset includes 175 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019506-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9485zt
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nitzschia frustulum (Kützing) Grunow, 1880, Scenedesmus quadricauda (Turpin) Bréb., Schroederia setigera (Schröder) Lemmerm., Cyclotella meneghiniana Kützing, 1844, Cyclotella atomus Hustedt, 1937, Stephanodiscus parvus Stoermer & Håkansson, 1984, Cyclotella minutula Kützing, 1844, Nitzschia fonticola (Grunow) Grunow, 1881, Nitzschia palea (Kützing) W.Smith, 1856, Surirella angusta Kützing, 1844, Strombidium viride Stein, Urotricha furcata Schewiakoff, 1892, Tintinnidium fluviatile (Stein, 1863) Kent, 1881, Polyarthra trigla Ehrenberg, 1834, Cyclotella dubia Hilse, 1861, Stephanodiscus hantzschii Grunow, 1880, Keratella cochlearis (Gosse, 1851), Nemopsis bachei L.Agassiz, 1849, Diphyes chamissonis Huxley, 1859, Lensia subtiloides (Lens & van Riemsdijk, 1908), Beroe cucumis Fabricius, 1780, Pleurobrachia globosa Moser, 1903, Sinocalanus sinensis (Poppe, 1889), Centropages dorsispinatus Thompson I.C. & Scott A., 1903, Euchaeta rimana Bradford, 1974, Euchaeta concinna Dana, 1849, Euchaeta plana Mori, 1937, Labidocera euchaeta Giesbrecht, 1889, Pseudodiaptomus poplesia (Shen, 1955), Temora turbinata (Dana, 1849))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Country is one of (China)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 25 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064872-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.chuoh6
title: Occurrence Download

description: A dataset containing 897 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bromelia balansae Mez"
 ]
}

 The dataset includes 897 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019510-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.leewgz
title: Occurrence Download

description: A dataset containing 15147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Styrax L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15147 records from 259 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073169-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.skb3mu
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Miconia leptantha Urb. & Ekman"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174688-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11091020
title: 2. FRACTESUS_FRAMATOME_ANP-4_KJc_MCT_-105_BL3D2

description: Fractesus project. Fracture test mini-CT. Raw data ANP-4. Framatome.
DOI: 10.5281/zenodo.11091021
title: 2. FRACTESUS_FRAMATOME_ANP-4_KJc_MCT_-105_BL3D2

description: Fractesus project. Fracture test mini-CT. Raw data ANP-4. Framatome.
DOI: 10.15468/dl.c9avm2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Porphyridiophyceae",
 "HasCoordinate is true",
 "Country is one of (Norway)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229997-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7jse2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Haplosporea",
 "HasCoordinate is true",
 "Country is one of (Norway)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230016-210914110416597/datasets/export for details.
DOI: 10.5281/zenodo.11090497
title: Tumor-induced alterations in single-nucleus transcriptome of atrophying muscles

description: Experimental Design

Syngeneic C57BL/6 mice injected with Lewis Lung Carcinoma (LLC) cells were sacrificed 16 days after tumor inoculation while they experienced moderate cachexia and loss of muscle mass and function. We investigated single-nucleus transcriptomes of the tibialis anterior (TA) muscle from tumor-bearing mice and their non-tumor-bearing controls.

Protocols

Mice were housed at 22°C and under 50% humidity with 12 hours of light and 12 hours of dark cycles (07:00 – 19:00) and given ad libitum access to a standard rodent chow diet and water in Koc University Animal Research Facility in accordance with institutional policies and animal care ethics guidelines.

8-12 weeks old male mice with C57BL/6 background and Lewis lung carcinoma (LLC) cells were used for tumor inoculation. LLC cells were cultured in DMEM (Sigma, no. 5796) with 10% fetal bovine serum (FBS) and penicillin/streptomycin (Invitrogen). 5 million LLC cells were injected subcutaneously over the flank while control mice received PBS only. Muscle tissues were harvested at 16 days after LLC inoculation.

TA muscle samples dissected from 6 mice in each group were combined and processed together. Samples were chopped with dissection scissors and placed into a lysis buffer containing 10 mM Tris-HCl, 10 mM NaCl, 3 mM MgCl2, and 0.1% NP40 in nuclease-free water. Samples were homogenized using a douncer and filtered with 70 µm and 40 µm cell strainer. After centrifugation for 5 min at 500 g at 4 °C, supernatant was discarded and nuclei were resuspended and stained with DAPI and subjected to fluorescence activated cell sorting.

10X Genomics applications were used following the manufacturer’s guidelines (Chromium Next GEM Single Cell 3ʹ Reagent Kits) to prepare the libraries, which were sequenced using the Illumina HiSeq X system.

Data

Sequencing data was first analyzed and filtered using Cell Ranger (v7.0) Single-Cell Software Suite provided by 10X Genomics. Data was counted and mapped with cellranger count function with --include-introns option for pre-mRNAs (mm10).

Further analysis was performed using Seurat (v4.3.0) R (v4.2.2) package on R Studio (v2022.12.0), which filters nuclei, normalizes expression data, and carries out principal component analysis for clustering and Uniform Manifold Approximation and Projection (UMAP) visualization.

Code

You can see the code in R script file.
DOI: 10.5281/zenodo.11090275
title: Tumor-induced alterations in single-nucleus transcriptome of atrophying muscles

description: Experimental Design

Syngeneic C57BL/6 mice injected with Lewis Lung Carcinoma (LLC) cells were sacrificed 16 days after tumor inoculation while they experienced moderate cachexia and loss of muscle mass and function. We investigated single-nucleus transcriptomes of the tibialis anterior (TA) muscle from tumor-bearing mice and their non-tumor-bearing controls.

Protocols

Mice were housed at 22°C and under 50% humidity with 12 hours of light and 12 hours of dark cycles (07:00 – 19:00) and given ad libitum access to a standard rodent chow diet and water in Koc University Animal Research Facility in accordance with institutional policies and animal care ethics guidelines.

8-12 weeks old male mice with C57BL/6 background and Lewis lung carcinoma (LLC) cells were used for tumor inoculation. LLC cells were cultured in DMEM (Sigma, no. 5796) with 10% fetal bovine serum (FBS) and penicillin/streptomycin (Invitrogen). 5 million LLC cells were injected subcutaneously over the flank while control mice received PBS only. Muscle tissues were harvested at 16 days after LLC inoculation.

TA muscle samples dissected from 6 mice in each group were combined and processed together. Samples were chopped with dissection scissors and placed into a lysis buffer containing 10 mM Tris-HCl, 10 mM NaCl, 3 mM MgCl2, and 0.1% NP40 in nuclease-free water. Samples were homogenized using a douncer and filtered with 70 µm and 40 µm cell strainer. After centrifugation for 5 min at 500 g at 4 °C, supernatant was discarded and nuclei were resuspended and stained with DAPI and subjected to fluorescence activated cell sorting.

10X Genomics applications were used following the manufacturer’s guidelines (Chromium Next GEM Single Cell 3ʹ Reagent Kits) to prepare the libraries, which were sequenced using the Illumina HiSeq X system.

Data

Sequencing data was first analyzed and filtered using Cell Ranger (v7.0) Single-Cell Software Suite provided by 10X Genomics. Data was counted and mapped with cellranger count function with --include-introns option for pre-mRNAs (mm10).

Further analysis was performed using Seurat (v4.3.0) R (v4.2.2) package on R Studio (v2022.12.0), which filters nuclei, normalizes expression data, and carries out principal component analysis for clustering and Uniform Manifold Approximation and Projection (UMAP) visualization.

Code

You can see the code in R script file.
DOI: 10.5281/zenodo.11090276
title: Tumor-induced alterations in single-nucleus transcriptome of atrophying muscles

description: Experimental Design

Syngeneic C57BL/6 mice injected with Lewis Lung Carcinoma (LLC) cells were sacrificed 16 days after tumor inoculation while they experienced moderate cachexia and loss of muscle mass and function. We investigated single-nucleus transcriptomes of the tibialis anterior (TA) muscle from tumor-bearing mice and their non-tumor-bearing controls.

Protocols

Mice were housed at 22°C and under 50% humidity with 12 hours of light and 12 hours of dark cycles (07:00 – 19:00) and given ad libitum access to a standard rodent chow diet and water in Koc University Animal Research Facility in accordance with institutional policies and animal care ethics guidelines.

8-12 weeks old male mice with C57BL/6 background and Lewis lung carcinoma (LLC) cells were used for tumor inoculation. LLC cells were cultured in DMEM (Sigma, no. 5796) with 10% fetal bovine serum (FBS) and penicillin/streptomycin (Invitrogen). 5 million LLC cells were injected subcutaneously over the flank while control mice received PBS only. Muscle tissues were harvested at 16 days after LLC inoculation.

TA muscle samples dissected from 6 mice in each group were combined and processed together. Samples were chopped with dissection scissors and placed into a lysis buffer containing 10 mM Tris-HCl, 10 mM NaCl, 3 mM MgCl2, and 0.1% NP40 in nuclease-free water. Samples were homogenized using a douncer and filtered with 70 µm and 40 µm cell strainer. After centrifugation for 5 min at 500 g at 4 °C, supernatant was discarded and nuclei were resuspended and stained with DAPI and subjected to fluorescence activated cell sorting.

10X Genomics applications were used following the manufacturer’s guidelines (Chromium Next GEM Single Cell 3ʹ Reagent Kits) to prepare the libraries, which were sequenced using the Illumina HiSeq X system.

Data

Sequencing data was first analyzed and filtered using Cell Ranger (v7.0) Single-Cell Software Suite provided by 10X Genomics. Data was counted and mapped with cellranger count function with --include-introns option for pre-mRNAs (mm10).

Further analysis was performed using Seurat (v4.3.0) R (v4.2.2) package on R Studio (v2022.12.0), which filters nuclei, normalizes expression data, and carries out principal component analysis for clustering and Uniform Manifold Approximation and Projection (UMAP) visualization.

Code

You can see the code in R script file.
DOI: 10.15468/dl.napg6h
title: Occurrence Download

description: A dataset listing the 120008 species recorded in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset's 120008 records were derived from 9028 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022995-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mkj69z
title: Occurrence Download

description: A dataset containing 451 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudois nayaur (Hodgson, 1833)"
 ]
}

 The dataset includes 451 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107294-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wfmeg2
title: Occurrence Download

description: A dataset containing 1130 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pediomelum rhombifolium (Torr. & A.Gray) Rydb."
 ]
}

 The dataset includes 1130 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067170-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.