cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12981266
title: A genetic assessment of the taxonomic status of New Zealand mussels of the genus <i>Xenostrobus</i> Wilson, 1967

description: The genus <i>Xenostrobus</i> consists of small, marine and estuarine mussels that all appear similar externally. One of its estuarine species, <i>Xenostrobus securis,</i> with a native range in New Zealand and Australia, has become invasive in the Northern Hemisphere. No genetic data are available to determine if <i>X. securis</i> populations from the two countries are conspecific. Additionally, marine <i>Xenostrobus</i> from New Zealand have often been regarded as a species, <i>X. neozelanicus,</i> distinct fromthe marine Australian species <i>X. pulex</i>. We combined new DNA sequences with published data to assess the taxonomic status of New Zealand <i>Xenostrobus.</i> The data comprised 658 aligned bases of mitochondrial cytochrome <i>c</i> oxidase subunit I (COI) gene and 331 bases of nuclear histone H3. There was no evidence that <i>X. securis</i> populations from Australia and New Zealand are specifically distinct. Northern Hemisphere specimens of <i>X. securis</i> belonged to Australian, not New Zealand, clades in phylogenetic analyses of COI data, suggesting the former country as their more likely original source. The results confirm that <i>X. neozelanicus</i> and <i>X. pulex</i> are distinct species and for nomenclatural completeness for this taxonomic decision a lectotype is designated for <i>Mytilus ater</i> Zelebor in Dunker and Zelebor, 1866 [ = <i>Modiolus neozelanicus</i> Iredale, 1915].
DOI: 10.6084/m9.figshare.12981266.v1
title: A genetic assessment of the taxonomic status of New Zealand mussels of the genus <i>Xenostrobus</i> Wilson, 1967

description: The genus <i>Xenostrobus</i> consists of small, marine and estuarine mussels that all appear similar externally. One of its estuarine species, <i>Xenostrobus securis,</i> with a native range in New Zealand and Australia, has become invasive in the Northern Hemisphere. No genetic data are available to determine if <i>X. securis</i> populations from the two countries are conspecific. Additionally, marine <i>Xenostrobus</i> from New Zealand have often been regarded as a species, <i>X. neozelanicus,</i> distinct fromthe marine Australian species <i>X. pulex</i>. We combined new DNA sequences with published data to assess the taxonomic status of New Zealand <i>Xenostrobus.</i> The data comprised 658 aligned bases of mitochondrial cytochrome <i>c</i> oxidase subunit I (COI) gene and 331 bases of nuclear histone H3. There was no evidence that <i>X. securis</i> populations from Australia and New Zealand are specifically distinct. Northern Hemisphere specimens of <i>X. securis</i> belonged to Australian, not New Zealand, clades in phylogenetic analyses of COI data, suggesting the former country as their more likely original source. The results confirm that <i>X. neozelanicus</i> and <i>X. pulex</i> are distinct species and for nomenclatural completeness for this taxonomic decision a lectotype is designated for <i>Mytilus ater</i> Zelebor in Dunker and Zelebor, 1866 [ = <i>Modiolus neozelanicus</i> Iredale, 1915].
DOI: 10.21227/tms3-sn41
title: Temperature control for Newton’s Law of Cooling using PID Controller

description: In this paper, a PID controller is applied in order to control the temperature by a proposed model of Newton’s law of cooling. The control problem considers a model obtained, which the temperature of a body decreases with time is proportional to the difference in temperature between the body and its surroundings. This model is represented as a state variable model that describes a mathematical model of physical system as a set of input, output and state variables by errors with zero initial condition.The necessary conditions for the asymptotic stability of the proposed controller are validated by implementing the Lyapunov stability theorem. The theoretical concepts are validated applying numerical analysis, which prove the effectiveness of the PID controller to regulate the temperature of the system.
DOI: 10.21227/z3fn-cp09
title: Temperature control for Newton’s Law of Cooling using PID Controller

description: In this paper, a PID controller is applied in order to control the temperature by a proposed model of Newton’s law of cooling. The control problem considers a model obtained, which the temperature of a body decreases with time is proportional to the difference in temperature between the body and its surroundings. This model is represented as a state variable model that describes a mathematical model of physical system as a set of input, output and state variables by errors with zero initial condition.The necessary conditions for the asymptotic stability of the proposed controller are validated by implementing the Lyapunov stability theorem. The theoretical concepts are validated applying numerical analysis, which prove the effectiveness of the PID controller to regulate the temperature of the system.
DOI: 10.21227/hw8q-fy13
title: Model 05

description: Model 05.
DOI: 10.25345/c5nf4d
title: MassIVE MSV000086181 - GNPS-Bacillus subtilis PJS-11P-7-10-3-raw data
title: Two new amicoumacin antibiotics from the desert derived Bacillus subtilis PJS by using the modern MS/MS based molecular networking approach.
DOI: 10.21227/w8nv-px18
title: Model 05.1

description: Model 05 modified.
DOI: 10.21227/kgby-4221
title: Model 05.2

description: Modified Model 05
DOI: 10.6084/m9.figshare.12981335.v1
title: A dataset of host range of the viruses infecting vertebrates using the International Committee on Taxonomy of Viruses 2018 Master Species List

description: We developed a database of the most up-to-date data of the International Committee on Taxonomy of Viruses (ICTV) virus species (n=4958) and identified 1479 vertebrate virus species and their host ranges. We categorised 4958 viruses, of which 2010 were Animalia viruses including 1479 viruses infecting vertebrate hosts. Vertebrate viruses were further classified as human (n=404), bat (n=219), rodent (n=186), non-human primate (n=206) and livestock (n=267) viruses.
DOI: 10.25345/c5hr0r
title: MassIVE MSV000086182 - A Potential Regulatory Role for Glycosylation of Human Carboxylesterase 1 in Cancer Cell Growth
title: Comparative Proteomic Analysis by Tandem Mass Tag (TMT) Labeling Proteins were extracted from cells using lysis buffer and ultrasonication. Each 100-ug quantity of cell lysate was reduced with 20 uL of 500 mM triethylammonium bicarbonate (TEAB), alkylated, digested with Pierce MS-grade trypsin protease (Thermo Fisher Scientific, Waltham, MA, USA) and labeled with TMT reagents. To avoid technical errors, we split the samples into two groups and divided each group into three sets. Each experiment was repeated three times using the following conditions: TMT chemicals 126, 128, and 130 were labeled in mock samples, and chemicals 127, 129, and 131 were labeled in CES1-OE cell lysates. The labeled peptides were identified and quantified using an LTQ-Orbitrap XL mass spectrometer (Thermo Fisher Scientific). A Nano-LC system and C18 column were used for peptide separation. The following conditions were used for TMT-MS. Trypsin Digestion of Gel Spots and LC-MS/MS Analysis DEPs were identified and analyzed from the preparative gel. Selected spots were selected and transferred into separate fresh tubes. The spots were washed with 100 uL of distilled water and mixed with 50 uL of 50 mM NH4HCO3 (pH 7.8) and acetonitrile for 10 min. The supernatant was decanted, and the spots were dried in a speed vacuum concentrator for 10 min. The protein in each spot was digested with trypsin in 50 mM NH4HCO3. The spots were chilled on ice for 45 min and then incubated for 12 h. The trypsin-digested solutions were collected and evaporated. A Nano-LC system and C18 column were used for peptide separation and the peptides were identified using an LTQ-Orbitrap XL mass spectrometer (Thermo Fisher Scientific).
DOI: 10.34740/kaggle/dsv/1422351
title: 111111111111
DOI: 10.17863/cam.1194
title: Research data supporting “Polymer-assisted self-assembly of gold nanoparticle monolayers and their dynamical switching”

description: See the figure captions for detailed description of the data.
description: EPSRC [EP/G060649/1, EP/L027151/1], ERC [LINASS 320503], Leverhulme Trust [ECF2016-606]
DOI: 10.17863/cam.1234
title: Research data supporting “Sideslip estimation for articulated heavy vehicles at the limits of adhesion”

description: Matlab figure files matching the data plots within the publication. The raw data can be accessed from these figure files using Matlab.
description: EPSRC
DOI: 10.17863/cam.1239
title: Research data supporting “Accelerating Flow Propagator Measurements for the Investigation of Reactive Transport in Porous Media”

description: Data used and supporting the publication in Journal of Magnetic Resonance titled 'Accelerating Flow Propagator Measurements for the Investigation of Reactive Transport in Porous Media'
description: EPSRC [EP/L012251/1, EP/K039318/1]
DOI: 10.15152/qdb.180
title: QDB archive #180

description: This QDB archive contains data and model(s) from the following publication: Papa, E.; Gramatica, P. QSPR as a support for the EU REACH regulation and rational design of environmentally safer chemicals: PBT identification from molecular structure. Green Chem. 2010, 12, 836-843.
DOI: 10.17863/cam.1252
title: Research data supporting “Do mothers bias offspring sex ratios in carotenoid-rich environments?”

description: Data from an experimental treatment of carotenoids to hihi (Notiomystis cincta) mothers, conducted on Tiritiri Matangi Island, Auckland, New Zealand in 2004 and 2005. Spreadsheet 1 presents Laying rank and sex of eggs laid. Spreadsheet 2 contains clutch sex ratios and information about maternal age.
description: BBSRC [BB/J014109/1], NERC [NE/K00929X/1], Royal Society, Society in Science - Branco Weiss, Institute of Zoology (IOZ)
DOI: 10.17863/cam.1286
title: Research data supporting “Superconducting exchange coupling between ferromagnets”

description: This data is collected from the labs of Device Materials Group, Department of Materials Science and Metallurgy , University of Cambridge, in which the measurements were taken between July 2015 to July 2016. The data contains magnetisation measurements (magnetic hysteresis loops), and different transport measurements (resistance versus temperature curves, resistance versus external applied field curves) as presented in the Nature Materials paper.
description: ERC [AdG "Superspin" 291442], EPSRC [EP/N017242/1]
DOI: 10.17863/cam.1301
title: Research data supporting “Melting transition in lipid vesicles functionalised by mobile DNA linkers”

description: The dataset contains data on aggregation and melting experiments in samples of DNA-functionalised liposomes as described in the paper "Melting transition in lipid vesicles functionalised by mobile DNA linkers” (Soft Matter 12 (37), 7804-7817). The compressed folders contains sub-folders labelled either as “down0_tempXX_sampleY*” or “up0_tempXX_sampleY*”, each containing full resolution epifluorescence microscopy images in tiff format, acquired as described in the paper. Folders labelled a “down” and “up” are relative to experiments performed on cooling and heating respectively. XX indicates the temperature in degrees Celsius at which the images were acquired. The label Y identifies the number of DNA tethers of each kind (N) present on each vesicle, according to the following scheme: Y=1, 2, 5, 10, 20, 50 -&gt; N=3550,1775, 710, 355, 177, 71. Each folder contains 8 tiff images, whose names end with a number from 0 to 7. These correspond to the different fluorescent channels measured as described in the paper. Specifically: 0 -&gt; Excitation: Marina Blue, Emission: Marina Blue 1 -&gt; No Excitation (background) 2 -&gt; Excitation:Cy3, Emission: Cy3 3 -&gt; No Excitation (background) 4 -&gt; Excitation: Cy3, Emission: Cy5 5 -&gt; No Excitation (background) 6 -&gt; Excitation:Cy5, Emission: Cy5 7 -&gt; No Excitation (background) Images acquired with no excitation are used for background subtraction on the previous image in the sequence. The data shown in Figure 2 of the paper are obtained by averaging over three similar datasets. Analysis methods are described in the Methods section of the paper. These data have been used to produce the plots in Fig. 5(b) and Fig 6(b)-(c) of the paper. The data in Fig. 7(b) and Fig. 8(b) are obtained by averaging over 4 datasets.
description: EPSRC [EP/J017566/1]
DOI: 10.17863/cam.1302
title: Research data supporting “Tracking optical welding through groove modes in plasmonic nano-cavities”

description: Research data for the manuscript "Tracking optical welding through groove modes in plasmonic nano-cavities" published in Nano Letters
description: EPSRC [EP/G060649/1, EP/L027151/1, EP/G037221/1, EPSRC NanoDTC], ERC [LINASS 320503], MINECO [Project FIS2013- 41184-P], Basque consolidated groups [IT756-13], Winton Scholarship of the Physics of Sustainability.
DOI: 10.15152/qdb.181
title: QDB archive #181

description: This QDB archive contains data and model(s) from the following publication: Gramatica, P.; Chirico, N.; Papa, E.; Cassani, S.; Kovarich, S. QSARINS: A new software for the development, analysis, and validation of QSAR MLR models. Journal of Computational Chemistry 2013, 34, 2121–2132.
DOI: 10.17863/cam.1309
title: Research data supporting “Tracking Optical and Electronic Behaviour of Quantum Contacts in Sub-Nanometre Plasmonic Cavities”

description: Force, conductance, and spectrally resolved light scattering measurements of two nanoscale metal tips as they are slowly brought into contact. Further description of the data is given in the linked publication.
description: EPSRC [EP/G060649/1, EP/L027151/1, EP/K028510/1], ERC [LINASS 320503], Ikerbasque, Queens’ College, Cambridge and the Royal Commission for the Exhibition of 1851.
DOI: 10.17863/cam.1635
title: Research data supporting “Forces and Structures of the Herpes Simplex Virus (HSV) Entry Mechanism”

description: The main file shows a superstructure the paper proposes for HSV's entry-essential glycoproteins that would stabilize a compact form of the gB fusogen: The compact form of the gB trimer (blue/mauve/cyan) is surrounded by a ring of three gHgL heterodimers (pink/grey/magenta) that are in turn held in place by three gD glycoproteins (green). Also shown are Nectin (orange) and HVEM (purple) in their binding configurations to gD, illustrating the lack of steric hindrance with the rest of the superstructure. These are held to be transition states, because either Nectin or HVEM can displace a region on gD that then binds to gHgL, which would cause each one in turn to adopt the open configuration shown in the other file. Once all three gHgL are in the open configuration the hairpin loops of gB would be free to rotate, allowing gB to spring upwards into the cell membrane. Active cellular forces pulling inwards on the gD receptors then continue to pull the entire complex via gD, causing fusion of the cell membrane with the viral envelope and releasing the tegument and capsid into the cell. This mechanism is consistent with the finding [JACS 2013, 135, 11175 dx.doi.org/10.1021/ja4038406 ] that a single gD unbound by antibody is sufficient for HSV entry to some cell types, because each superstructure would require all three gDs to be activated by binding one of their receptors, Nectin-1 or Nectin-2, Herpes Virus Entry Mediator (HVEM), or 3-O-Sulfated Heparan Sulfate (3OSHS) on Syndecan-1 or Syndecan-2. For full references please see ACS Infectious Diseases, 1.9 (2015): 403-415 http://pubs.acs.org/doi/abs/10.1021/acsinfecdis.5b00059 Open Access: https://www.repository.cam.ac.uk/handle/1810/257391
description: Christ's College, University of Cambridge [JRF]
DOI: 10.15152/qdb.182
title: QDB archive #182

description: This QDB archive contains data and model(s) from the following publication: Gramatica, P.; Cassani, S.; Roy, P. P.; Kovarich, S.; Yap, C. W.; Papa, E. QSAR Modeling is not “Push a Button and Find a Correlation”: A Case Study of Toxicity of (Benzo-)triazoles on Algae. Molecular Informatics 2012, 31, 817–835.
DOI: 10.17863/cam.1660
title: Measurement datasets 1-3.01 for the “Kymata Atlas”

description: The electromagnetic measurements of the human cortex used in the creation of the Kymata Atlas (datasets 1-3.01). The recordings were made at the MRC Cognition and Brain Sciences Unit, using an Elekta Neuromag MEG (306 ch.) and an EasyCap EEG (70 ch.). Electromagnetic brain signals are recorded from participants as they experience passive, naturalistic, stimuli. The participants involved are asked to watch a movie and/or listen to the radio (without any further tasks asked of them) and the recordings are made during this period. Data is anonomised and averaged over participants. Due to millisecond differences in stimulus delivery, there are two sets of recordings, one syncronised to the sound stimulus, and one to the visual stimulus.
description: ERC [Advanced Grant 230570, “Neurolex” to WMW], MRC Cognition and Brain Sciences Unit [U.1055.04.002.00001.01 to WMW]
DOI: 10.17863/cam.1662
title: Research data supporting “The vesicle priming factor CAPS functions as a homodimer via C2 domain interactions to promote regulated vesicle exocytosis”

description: AFM images of CAPS, both dried onto mica and associated with lipid bilayers.
description: Royal Society [NF110528], NIH [DK040428 and GM119158]
DOI: 10.17863/cam.1671
title: Research data supporting “Friction of carbon fibre tows”

description: Data files relating to the following paper Friction of carbon fibre tows DM Mulvihill, O Smerdova, MPF Sutcliffe Accepted for publication in Composites Part A 29/8/16
description: EPSRC [EP/K032798/1]
DOI: 10.17863/cam.1675
title: Research data supporting “Single-molecule optomechanics in "picocavities"”

description: The experimental data taken in the NanoPhotonics Group at the Cavendish Laboratory (University of Cambridge), collected between 01/10/2015 to 01/04/2016. Simulation data obtained at CSIC - UPV/EHU and DIPC between 01/04/2016 and 10/07/2016. Dataset for journal article "Single-molecule optomechanics in picocavities".
description: EPSRC [EP/G060649/1, EP/L027151/1], ERC [LINASS 320503], MINECO [FIS2013- 41184-P], Basque Government consolidated groups [IT756-13]
DOI: 10.17863/cam.1731
title: Research data supporting "Many-Body Dispersion Correction Effects on Bulk and Surface Properties of Rutile and Anatase TiO2"

description: Original VASP output files ("OUTCAR") for optimised bulk and surface models of rutile and anatase titanium dioxide (TiO2). The levels of theory used, "PBE", "TS", and "MBD", respectively, are explained and referenced in detail in the associated publication.
description: EPSRC [EP/K014560/1], Alexander von Humboldt Foundation
DOI: 10.17863/cam.1733
title: Research data supporting "Quantifying the role of vehicle size, powertrain technology, activity and consumer behaviour on new UK passenger vehicle fleet energy use and emissions under different policy objectives"

description: Matlab .fig files to reconstruct figures used in the publication. Each file is labelled corresponding to the figure it recreates.
description: EPSRC [EP/K00915X/1, EP/F034350/1]
DOI: 10.15152/qdb.183
title: QDB archive #183

description: This QDB archive contains data and model(s) from the following publication: Roy, P. P.; Kovarich, S.; Gramatica, P. QSAR model reproducibility and applicability: A case study of rate constants of hydroxyl radical reaction models applied to polybrominated diphenyl ethers and (benzo-)triazoles. Journal of Computational Chemistry 2011, 32, 2386–2396.
DOI: 10.17863/cam.1735
title: Research data supporting “Impact of the Reinforcement Layout on the Load Capacity of Reinforced Concrete Half-Joints”

description: Dataset supporting the paper 'Impact of the Reinforcement Layout on the Load Capacity of Reinforced Concrete Half-Joints' published in Engineering Structures.
description: EPSRC [EP/K016148/1]
DOI: 10.17863/cam.1736
title: Research data supporting “Engine maps of fuel use and emissions from transient driving cycles"

description: Matlab fig files to recreate the figures used in the publication.
description: EPSRC [EP/K00915X/1, EP/F034350/1]
DOI: 10.17863/cam.4183
title: Research data supporting “Inverse barocaloric effects in ferroelectric BaTiO3 ceramics”

description: X-ray diffraction patterns.
description: ERC [Starting Grant 680032], EPSRC [EP/M003752/1], Royal Society
DOI: 10.17863/cam.4200
title: Research data supporting “Surface-bound cucurbit[8]uril catenanes on magnetic nanoparticles exhibiting molecular recognition”

description: NMR of MV-SIlane and MV-silane@CB[8], ITC of MV-silane@CB[8], MS of three peptide sequences.
description: EPSRC [EP/L504920/1], Marie Curie FP7 programme [FP7 SASSYPoL ITN(607602)], CSC cambridge scholarship, Leverhulme Trust.
DOI: 10.17863/cam.4309
title: Research data supporting “Label-free analysis and sorting of microalgae and cyanobacteria in microdroplets by intrinsic chlorophyll fluorescence for the identification of fast growing strain”

description: Original or unprocessed data is provided in support of the article “Label-free analysis and sorting of microalgae and cyanobacteria in microdroplets by intrinsic chlorophyll fluorescence for the identification of fast growing strain”. The data is structured into three folders named: (1) ANDOR fluorescence images and spreadsheet; (2) Fluorescence spectra for cyano and microalgae used for Figure 1A and 1B; (3) Files compling the data for Figure 2, growth curves, chlorophyl detection in droplets and micrographs of cyano in droplets
description: EPSRC [EP/P505445/1], BBSRC [BB/J014540/1, sLoLa BB/L002957/1], EC [FP7 DEMA project: no. 309086]
DOI: 10.17863/cam.4370
title: Research data supporting "Low Stress Ion Conductance Microscopy of Sub-Cellular Stiffness"

description: Cell Stiffness ICM Archive Notes (1) Ethics: We solely study cells in culture: In the main text sentence saying 'in vivo' this means 'in a living cell' (2) Computation: Stiffness maps, Gwyddion 2.40; Approach fits, Excel 2010. (3) Graphics: Inkscape 0.91. Contents (1) Force calculations (2) Fits to cell approaches (3) Scan data and stiffness maps
description: BBSRC [BB/L006227/1], EPSRC [EP/H01098X/1], MRC [G0701057, MR/K501372/1]
DOI: 10.17863/cam.4374
title: Research data supporting “MRI measurements of reporter-mediated increases in transmembrane water exchange enable detection of a gene reporter”

description: Raw data - NBT-TR38866.xlsx.zip - This file describes all metadata associated with the manuscript and contains the raw data forming the base for all figures in the manuscript. ImageData - NBT-TR38866.zip - This file contains all imaging raw data described in the metadata file.
description: Cancer Research UK [17242, 16465], EPSRC
DOI: 10.17863/cam.4376
title: Research Data Supporting "Gyroid Optical Metamaterials: Calculating the Effective Permittivity of Multidomain Samples"

description: Data Supporting Publication "Gyroid Optical Metamaterials: Calculating the Effective Permittivity of Multidomain Samples"
description: Swiss National Science Foundation, National Center of Competence in Research Bio-Inspired Materials, [200021_163220 and PZ00P2_168223], EPSRC [Cambridge NanoDTC EP/G037221/1, EP/L027151/1, and EP/G060649/1], ERC [LINASS 320503], European Union’s Horizon 2020 Research and Innovation Programme under the Marie Sklodowska-Curie [706329], Adolphe Merkle Foundation
DOI: 10.15152/qdb.184
title: QDB archive #184

description: This QDB archive contains data and model(s) from the following publication: Oja, M.; Maran, U. Quantitative structure-permeability relationships at various pH values for neutral and amphoteric drugs and drug-like compounds. SAR QSAR Environ. Res. 2016, 27, 813-832.