cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hy5nuz
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Schizocalyx veraguensis (Dwyer) Kainul. & B.Bremer"
 ]
}

 The dataset includes 50 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010152-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n02pr3
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Planktonic foraminifer occurrences and zonations from IODP Hole 313-M0029A"
 ]
}

 The dataset includes 164 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012429-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8wbqp8
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurea peucedanifolia Boiss. & Orph."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093367-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgjwzc
title: Occurrence Download

description: A dataset containing 78482 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clusiaceae",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 78482 records from 385 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012429-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fve3es
title: Occurrence Download

description: A dataset containing 333713 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Meles meles (Linnaeus, 1758)"
 ]
}

 The dataset includes 333713 records from 2543 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001872-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zw6v9u
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "OccurrenceStatus is Present",
 "TaxonKey is Loxodonta africana (Blumenbach, 1797)"
 ]
}

 The dataset's 1 records were derived from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033218-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.chrb7d
title: Occurrence Download

description: A dataset containing 96817 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Passerina Vieillot, 1816"
 ]
}

 The dataset includes 96817 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023086-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wz5jt4
title: Occurrence Download

description: A dataset containing 5261 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus alceifolius Poir."
 ]
}

 The dataset includes 5261 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082804-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pk5zd2
title: Occurrence Download

description: A dataset containing 359 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ochotona hyperborea (Pallas, 1811)"
 ]
}

 The dataset includes 359 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219872-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8pywcy
title: Occurrence Download

description: A dataset containing 6306 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen"
 ]
 },
 "Geometry POLYGON((17.685 43.728,18.944 43.728,18.944 44.612,17.685 44.612,17.685 43.728))",
 "HasCoordinate is true",
 "TaxonKey is Aves",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6306 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023100-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.32mduq
title: Occurrence Download

description: A dataset containing 1420 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is National Lamprey Survey of Scotland (2003-2005)"
 ]
}

 The dataset includes 1420 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005482-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.my68ke
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Camelus Linnaeus, 1758"
 ]
}

 The dataset includes 69 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219874-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qy9fcm
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Chironius spixii (Hallowell, 1845)"
 ]
}

 The dataset includes 186 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136286-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yyudwy
title: Occurrence Download

description: A dataset containing 33598 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sciurus niger Linnaeus, 1758"
 ]
}

 The dataset includes 33598 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229287-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwxw26
title: Occurrence Download

description: A dataset containing 1472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erodium gruinum (L.) L'Hér.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1472 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082809-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nzjabl
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "Country is China",
 "Country is United States of America",
 "Country is Japan",
 "Country is Chinese Taipei"
 ]
 },
 "Issue is Geodetic datum assumed WGS84",
 "TaxonKey is Praxelis clematidea (Griseb.) R.M.King & H.Rob."
 ]
}

 The dataset includes 32 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008231-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azyeju
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Polystichum sodiroi Christ"
 ]
}

 The dataset includes 20 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219881-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xq45vt
title: Occurrence Download

description: A dataset containing 399 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cirsium pulchellum (Greene) Wooton & Standl."
 ]
}

 The dataset includes 399 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153670-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eohvsb
title: Occurrence Download

description: A dataset containing 1748 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-74.55597 5.31906,-74.67133 5.21514,-74.27582 4.68429,-73.68256 4.72808,-73.6496 4.97986,-73.71002 5.24249,-74.35822 5.28625,-74.55597 5.31906))",
 "HasCoordinate is true",
 "TaxonKey is Amphibia"
 ]
}

 The dataset includes 1748 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008232-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.suhb7j
title: Occurrence Download

description: A dataset containing 61976 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tursiops truncatus (Montagu, 1821)"
 ]
}

 The dataset includes 61976 records from 296 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229299-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sb9g8c
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Freshwater Lamprey Survey Data"
 ]
}

 The dataset includes 772 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005478-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7bxgfh
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sarracenia rubra subsp. wherryi (Case & R.B.Case) D.E.Schnell"
 ]
}

 The dataset includes 89 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009363-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5rcw47
title: Occurrence Download

description: A dataset containing 2688 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Adelina bifurcata (Champion, 1893)",
 "TaxonKey is Adelonia filiformis (Laporte, 1840)",
 "TaxonKey is Alphitobius laevigatus (Fabricius, 1781)",
 "TaxonKey is Ammodonus granosus Fall, 1912",
 "TaxonKey is Anaedus rotundicollis LeConte, 1851",
 "TaxonKey is Anamphidora kimberleei Marshall, 1970",
 "TaxonKey is Apsena insularis Blaisdell, 1932",
 "TaxonKey is Apsena pubescens",
 "TaxonKey is Araeoschizus aalbui Papp, 1981",
 "TaxonKey is Araeoschizus agustinus Papp, 1998",
 "TaxonKey is Araeoschizus antennatus",
 "TaxonKey is Araeoschizus antennatus antennatus",
 "TaxonKey is Araeoschizus antennatus clarki Papp, 1989",
 "TaxonKey is Araeoschizus antennatus blaisdelli Papp, 1989",
 "TaxonKey is Araeoschizus blomi Papp, 1998",
 "TaxonKey is Araeoschizus elegantulus Papp, 1981",
 "TaxonKey is Araeoschizus interjectus Papp, 1981",
 "TaxonKey is Araeoschizus limbatus Blaisdell, 1943",
 "TaxonKey is Araeoschizus percellosus Papp, 1981",
 "TaxonKey is Araeoschizus squamulissimus Papp, 1981",
 "TaxonKey is Argoporis apicalis",
 "TaxonKey is Argoporis apicalis californica Berry, 1980",
 "TaxonKey is Argoporis apicalis apicalis",
 "TaxonKey is Argoporis costulata (Horn, 1870)",
 "TaxonKey is Argoporis cribrata (LeConte, 1861)",
 "TaxonKey is Argoporis ebenina Horn, 1894",
 "TaxonKey is Argoporis estebanensis Berry, 1980",
 "TaxonKey is Argoporis impressa Blaisdell, 1925",
 "TaxonKey is Argoporis inconstans Horn, 1894",
 "TaxonKey is Argoporis longipes Blaisdell, 1923",
 "TaxonKey is Argoporis nigra",
 "TaxonKey is Argoporis nigra nigra",
 "TaxonKey is Argoporis nigra inflata Berry, 1980",
 "TaxonKey is Argoporis regalis Berry, 1980",
 "TaxonKey is Asbolus laevis LeConte, 1851",
 "TaxonKey is Asbolus mexicanus",
 "TaxonKey is Asbolus verrucosus LeConte, 1851"
 ]
 }
 ]
}

 The dataset includes 2688 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229298-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.862y2y
title: Occurrence Download

description: A dataset containing 3269 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phalaris coerulescens Desf.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3269 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005484-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0l1myu
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex impressinervia Bryson, Kral & Manhart"
 ]
}

 The dataset includes 138 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009361-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2fztc7
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alocandrena Michener, 1986"
 ]
}

 The dataset includes 87 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259189-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pri4o0
title: Occurrence Download

description: A dataset containing 1244 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 2000-2019",
 "Geometry POLYGON((-262.66113 29.84064,-266.35254 26.5099,-267.05566 20.7972,-264.33105 15.19939,-260.99121 21.94305,-260.46387 26.58853,-262.66113 29.84064))",
 "HasCoordinate is true",
 "TaxonKey is Actinopterygii",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1244 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012943-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ry9pj3
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Sea lamprey distribution and abundance in the River Spey: phases II and III, 2001/2002"
 ]
}

 The dataset includes 92 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005479-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25twb5
title: Occurrence Download

description: A dataset containing 11639 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alternanthera sessilis (L.) R.Br. ex DC."
 ]
}

 The dataset includes 11639 records from 335 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014898-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.juf2ks
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erodium rodiei (Braun-Blanq.) Poirion",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 219 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082828-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.syfnnt
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parnassius simo simoides Bang-Haas, 1927"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012944-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qp39ea
title: Occurrence Download

description: A dataset containing 27643 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Antechinus stuartii Macleay, 1841"
 ]
}

 The dataset includes 27643 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219875-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3rnwy
title: Occurrence Download

description: A dataset containing 44554 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-22.66277 49.74421,13.66277 49.74421,13.66277 64.25579,-22.66277 64.25579,-22.66277 49.74421))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Petromyzonti"
 ]
}

 The dataset includes 44554 records from 196 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005498-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kn7qg
title: Occurrence Download

description: A dataset containing 750 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bungarus caeruleus"
 ]
}

 The dataset includes 750 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014448-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zscnua
title: Occurrence Download

description: A dataset containing 397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((6.60858 44.47582,13.55547 44.47582,13.55547 47.16162,6.60858 47.16162,6.60858 44.47582))",
 "HasGeospatialIssue is false",
 "TaxonKey is Cytisus emeriflorus"
 ]
}

 The dataset includes 397 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014447-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.td7af8
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "TaxonKey is Psidium montanum"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014449-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15711236
title: PRIME Database Archive Data

description: Description

This deposit contains the full metadata and abundance tables from the PRIME database (Phenotypic Reference for Integrated Microbiome Enrichment), along with the accompanying R package primeDB.

Included files:





Sample-level and project-level metadata





samples_metadata.csv: curated metadata for 53,449 microbiome samples.




projects_metadata.csv: metadata summarizing the 111 individual studies.






Taxonomic abundance tables (n = 24)





Format: [ref]_[level]_[type].csv





ref: reference database used for taxonomic assignment (silva for SILVA 138.2 or gg for Greengenes2 2024.09)




level: taxonomic rank (phylum, class, order, family, genus, species)




type: abundance type (absolute(for observed abundance) or relative(for relative abundance)






Each file provides an abundance matrix (samples × taxa) at the specified level.






R package





primeDB_0.1.0.tar.gz: an R package providing programmatic access to the PRIME API and data.




Classifier



silva-138-99-nb-classifier.qza: official classifier from QIIME2 of SILVA 138.2

gg_2024_09_backbone_full_length.nb.qza: official classifier from QIIME2 of Greengenes2 2024.09




These resources are provided as part of the PRIME project for reproducible research, data reuse, and transparent microbiome meta-analysis. All files are freely available for academic use.
DOI: 10.5281/zenodo.15711237
title: PRIME Database Archive Data

description: Description

This deposit contains the full metadata and abundance tables from the PRIME database (Phenotypic Reference for Integrated Microbiome Enrichment), along with the accompanying R package primeDB.

Included files:





Sample-level and project-level metadata





samples_metadata.csv: curated metadata for 53,449 microbiome samples.




projects_metadata.csv: metadata summarizing the 111 individual studies.






Taxonomic abundance tables (n = 24)





Format: [ref]_[level]_[type].csv





ref: reference database used for taxonomic assignment (silva for SILVA 138.2 or gg for Greengenes2 2024.09)




level: taxonomic rank (phylum, class, order, family, genus, species)




type: abundance type (absolute(for observed abundance) or relative(for relative abundance)






Each file provides an abundance matrix (samples × taxa) at the specified level.






R package





primeDB_0.1.0.tar.gz: an R package providing programmatic access to the PRIME API and data.




Classifier



silva-138-99-nb-classifier.qza: official classifier from QIIME2 of SILVA 138.2

gg_2024_09_backbone_full_length.nb.qza: official classifier from QIIME2 of Greengenes2 2024.09




These resources are provided as part of the PRIME project for reproducible research, data reuse, and transparent microbiome meta-analysis. All files are freely available for academic use.