cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9943715
title: C elegans killing assay

description: <i>C. elegans</i> were fed <i>S. aureus</i> and mortality was tracked to determine virulence of <i>S. aureus</i> strains.<br>
DOI: 10.6084/m9.figshare.9943736.v2
title: Genome assembly stats

description: Genome statistics for <i>S. aureus</i> assemblies.<br>
DOI: 10.6084/m9.figshare.9943697.v2
title: Teste

description: Figure 1
DOI: 10.6084/m9.figshare.9943715.v1
title: C elegans killing assay

description: <i>C. elegans</i> were fed <i>S. aureus</i> and mortality was tracked to determine virulence of <i>S. aureus</i> strains.<br>
DOI: 10.6084/m9.figshare.9943712.v1
title: occurrence_data_Andigena_Colombia.xlsx

description: Georeferenced occurrences data of Andigena hypoglauca, Andigena nigrirostris and Andigena laminirostris in Colombia
DOI: 10.6084/m9.figshare.9943670
title: Waiting for CARLA base en.xlsx

description: Database of a survey of HIV outpatients’ clinics physicians' preparedness and disposition towards the CARLA (cabotegravir and rilpivirine long-acting) treatment strategy
DOI: 10.6084/m9.figshare.9943712.v2
title: occurrence_data_Andigena_Colombia.xlsx

description: Georeferenced occurrences data of Andigena hypoglauca, Andigena nigrirostris and Andigena laminirostris in Colombia
DOI: 10.6084/m9.figshare.9943688.v1
title: A cellular automata downscaling based 1 km global land use datasets (2010–2100)

description: This database includes fractional cover types (i.e., cropland, forest, grass, shrub, wetland, water, impervious, barren, snow/ice, and urban green spaces) at 30 arc second, under four representative concentration pathway (RCP) (i.e., RCP26, RCP45, RCP60,and RCP85) scenarios in future (2010-2100). The value of each pixel indicates the fraction of this cover in each grid. Should multiple a scaling value of 0.01. The dataformat is GeoTIFF. More details about this dataset can be found in: Li, X., Yu, L., Sohl, T., Clinton, N., Li, W., Zhu, Z., Liu, X., & Gong, P. (2016). A cellular automata downscaling based 1 km global land use datasets (2010–2100). <i>Science Bulletin, 61</i>, 1651-1661.
DOI: 10.6084/m9.figshare.9943712.v3
title: occurrence_data_Andigena_Colombia.xlsx

description: Georeferenced occurrences data of Andigena hypoglauca, Andigena nigrirostris and Andigena laminirostris in Colombia
DOI: 10.6084/m9.figshare.9943688.v2
title: A cellular automata downscaling based 1 km global land use datasets (2010–2100)

description: This database includes fractional cover types (i.e., cropland, forest, grass, shrub, wetland, water, impervious, barren, snow/ice, and urban green spaces) at 30 arc second, under four representative concentration pathway (RCP) (i.e., RCP26, RCP45, RCP60,and RCP85) scenarios in future (2010-2100). The value of each pixel indicates the fraction of this cover in each grid. Should multiple a scaling value of 0.01. The dataformat is GeoTIFF. More details about this dataset can be found in: Li, X., Yu, L., Sohl, T., Clinton, N., Li, W., Zhu, Z., Liu, X., & Gong, P. (2016). A cellular automata downscaling based 1 km global land use datasets (2010–2100). <i>Science Bulletin, 61</i>, 1651-1661.
DOI: 10.6084/m9.figshare.9943712.v5
title: occurrence_data_Andigena_Colombia.xlsx

description: Georeferenced occurrences data of Andigena hypoglauca, Andigena nigrirostris and Andigena laminirostris in Colombia
DOI: 10.6084/m9.figshare.9943712.v4
title: occurrence_data_Andigena_Colombia.xlsx

description: Georeferenced occurrences data of Andigena hypoglauca, Andigena nigrirostris and Andigena laminirostris in Colombia
DOI: 10.6084/m9.figshare.9943571
title: Assessment and simulation of land use and land cover change impacts on the land surface temperature of Chaoyang District in Beijing, China.

description: tables for the manuscript
DOI: 10.6084/m9.figshare.11688927
title: Clinicopathologic characteristics of 342 patients with multicentric Castleman disease in Japan

description: <b>Objectives:</b> To assess the clinicopathologic features of Multicentric Castleman disease (MCD) patients in Japan. <b>Methods:</b> We assessed baseline data for 342 Japanese MCD patients with a biopsy-proven diagnosis, enrolled in a prospective, observational study for tocilizumab treatment. <b>Results:</b> Of 342 patients, 86.0% had plasma-cell type. None had a family history of MCD. Median disease duration of MCD was 3.7 years. Mean body weight and body mass index tended to be lower than those in the general Japanese population. The most common clinical presentations besides lymphadenopathy included fatigue (61.7%), pulmonary involvement (42.7%), and splenomegaly (41.8%). Secondary amyloidosis was reported in 34 patients (9.9%). Laboratory abnormalities included decreased hemoglobin and albumin, and increased acute-phase proteins, serum immunoglobulins, and interleukin-6 (IL-6). IL-6 levels among the MCD patients tested in this study were correlated with levels of albumin, hemoglobin, triglyceride, total cholesterol, C-reactive protein, fibrinogen and immunoglobulin G (Spearman’s correlation coefficient, |<i>r</i>| = 0.28–0.59). <b>Conclusion:</b> The clinical features and laboratory abnormalities are similar to those previously reported in other countries, besides higher rates of pulmonary involvement, secondary amyloidosis, and ECG abnormalities. Our results imply that IL-6 is involved in MCD pathogenesis. These findings would be informative for diagnosis and appropriate treatment for MCD.
DOI: 10.6084/m9.figshare.11688927.v1
title: Clinicopathologic characteristics of 342 patients with multicentric Castleman disease in Japan

description: <b>Objectives:</b> To assess the clinicopathologic features of Multicentric Castleman disease (MCD) patients in Japan. <b>Methods:</b> We assessed baseline data for 342 Japanese MCD patients with a biopsy-proven diagnosis, enrolled in a prospective, observational study for tocilizumab treatment. <b>Results:</b> Of 342 patients, 86.0% had plasma-cell type. None had a family history of MCD. Median disease duration of MCD was 3.7 years. Mean body weight and body mass index tended to be lower than those in the general Japanese population. The most common clinical presentations besides lymphadenopathy included fatigue (61.7%), pulmonary involvement (42.7%), and splenomegaly (41.8%). Secondary amyloidosis was reported in 34 patients (9.9%). Laboratory abnormalities included decreased hemoglobin and albumin, and increased acute-phase proteins, serum immunoglobulins, and interleukin-6 (IL-6). IL-6 levels among the MCD patients tested in this study were correlated with levels of albumin, hemoglobin, triglyceride, total cholesterol, C-reactive protein, fibrinogen and immunoglobulin G (Spearman’s correlation coefficient, |<i>r</i>| = 0.28–0.59). <b>Conclusion:</b> The clinical features and laboratory abnormalities are similar to those previously reported in other countries, besides higher rates of pulmonary involvement, secondary amyloidosis, and ECG abnormalities. Our results imply that IL-6 is involved in MCD pathogenesis. These findings would be informative for diagnosis and appropriate treatment for MCD.
DOI: 10.6084/m9.figshare.9943526
title: A list of ecology and evolution journals as of 2018

description: A comprehensive list of ecology and evolution journals including citations, impact factor, and eigenfactor scores. Data derived from the 2018 Journal Citation Reports bibliometric tools.
DOI: 10.6084/m9.figshare.9943571.v1
title: Predicting the spatio-temporal impacts of LUCC on UHI dynamics by markov model in beijing china, with implication for sustainable mitigation policy.

description: tables for the manuscript
DOI: 10.6084/m9.figshare.9943526.v1
title: A list of ecology and evolution journals as of 2018

description: A comprehensive list of ecology and evolution journals including citations, impact factor, and eigenfactor scores. Data derived from the 2018 Journal Citation Reports bibliometric tools.
DOI: 10.6084/m9.figshare.9943442
title: Genome annotation of Salix arbutifolia

description: Genome annotation of <i>Salix arbutifolia </i>
DOI: 10.6084/m9.figshare.9943451
title: Test and kinematic data for performing the nine hole peg test in healthy adults

description: <b>Instrumented Nine Hole Peg Test data</b><br>These directories contain subject data from 9 subjects who performed 4 tests:- conventional nine hole peg test without motion capture sensors- conventional nine hole peg test with motion capture sensors- instrumented nine hole peg test without motion capture sensors- instrumented nine hole peg test with motion capture sensors<br>The conventional nine hole peg test (NHPT) was the Smith & Nephew Roylan versionThe instrumented version was prepared in the our lab, full details are here:https://github.com/JasonFriedman/InstrumentedNineHolePegTest<br>and in an upcoming paper<br>The data was recorded in Matlab using the RepeatedMeasures software:https://github.com/JasonFriedman/RepeatedMeasures<br>Each condition was performed 3 times.<br>Data is only provided when available (e.g. when the motion capture was not used, no motion capturedata is presented). When the conventional test was used, no data on the holes is provided. <br>**For the instrumented nine hole peg test (file that start with so_), there are 22 numbers on each line<br>The first 18 numbers are for the 9 holes (top then bottom sensors), the holesgo from left to right, up to down:1 2 34 5 67 8 9<br>The number will become high when the peg is placed in the hole<br>The next 3 numbers are for the container, the number will change when the fingers arein the container<br>The values are the voltage read from the analog inputs using Arduino (1023 = 5V).<br>The last number is a time stamp (in seconds)<br>**For the motion capture data (file that start with ts_), recorded using a Ascension trakStar system, sensors were placed on:1. Thumb finger nail2. Index finger nail3. Middle finger nail4. Ring finger nail5. Back of the palm6. Forearm, in line with the radius7. Upper arm8. Near the shoulder, or anterior scapula<br>The files with shoulder, elbow and wrist involve the appropriate movement (designed to allow findingthe joint centers).<br>Each file has 65 columns, 8 for each sensor, and the last one is to mark events (not relevant forthis study).<br>For each sensor, the 8 columns are:1. x (positive x is backward)2. y (positive y is left)3. z (positive z is down)4. azimuth (rotation about z)5. elevation (rotation about y)6. roll (rotation about x)Positions are in mm, angles are in degrees, with ZYX Euler angles<br>Column 7 is quality, 8 is the time stamp (in seconds)<br>-----Jason FriedmanOctober 2019jason@tau.ac.ilwww.movementscienceslab.comwww.curiousjason.com<br>
DOI: 10.6084/m9.figshare.9943442.v2
title: Genome annotation of Salix arbutifolia

description: Genome annotation of <i>Salix arbutifolia </i>
DOI: 10.6084/m9.figshare.9943442.v1
title: Chromosome-level assembly of Salix arbutifolia genome

description: Genome annotation of <i>Salix arbutifolia </i>
DOI: 10.6084/m9.figshare.9943451.v1
title: Test and kinematic data for performed the nine hole peg test in health adults

description: <b>Instrumented Nine Hole Peg Test data</b><br>These directories contain subject data from 9 subjects who performed 4 tests:- conventional nine hole peg test without motion capture sensors- conventional nine hole peg test with motion capture sensors- instrumented nine hole peg test without motion capture sensors- instrumented nine hole peg test with motion capture sensors<br>The conventional nine hole peg test (NHPT) was the Smith & Nephew Roylan versionThe instrumented version was prepared in the our lab, full details are here:https://github.com/JasonFriedman/InstrumentedNineHolePegTest<br>and in an upcoming paper<br>The data was recorded in Matlab using the RepeatedMeasures software:https://github.com/JasonFriedman/RepeatedMeasures<br>Each condition was performed 3 times.<br>Data is only provided when available (e.g. when the motion capture was not used, no motion capturedata is presented). When the conventional test was used, no data on the holes is provided. <br>**For the instrumented nine hole peg test (file that start with so_), there are 22 numbers on each line<br>The first 18 numbers are for the 9 holes (top then bottom sensors), the holesgo from left to right, up to down:1 2 34 5 67 8 9<br>The number will become high when the peg is placed in the hole<br>The next 3 numbers are for the container, the number will change when the fingers arein the container<br>The values are the voltage read from the analog inputs using Arduino (1023 = 5V).<br>The last number is a time stamp (in seconds)<br>**For the motion capture data (file that start with ts_), recorded using a Ascension trakStar system, sensors were placed on:1. Thumb finger nail2. Index finger nail3. Middle finger nail4. Ring finger nail5. Back of the palm6. Forearm, in line with the radius7. Upper arm8. Near the shoulder, or anterior scapula<br>The files with shoulder, elbow and wrist involve the appropriate movement (designed to allow findingthe joint centers).<br>Each file has 65 columns, 8 for each sensor, and the last one is to mark events (not relevant forthis study).<br>For each sensor, the 8 columns are:1. x (positive x is backward)2. y (positive y is left)3. z (positive z is down)4. azimuth (rotation about z)5. elevation (rotation about y)6. roll (rotation about x)Positions are in mm, angles are in degrees, with ZYX Euler angles<br>Column 7 is quality, 8 is the time stamp (in seconds)<br>-----Jason FriedmanOctober 2019jason@tau.ac.ilwww.movementscienceslab.comwww.curiousjason.com<br>
DOI: 10.6084/m9.figshare.9943334
title: Data from: An Investigation of Machine Learning Methods in Delta-radiomics Feature Analysis

description: This dataset includes 12 patients with advanced brain glioma treated with combination of stereotactic radiosurgery (SRS) and bevacizumab. DICOM files of T1 MRI, T2 FLAIR MRI collected at pre-radiotherapy (RT), one-week post-RT, and two-month post-RT are provided. The post-RT images have been rigidly registered to the pre-RT MRI by experienced medical physicists. The RT structure sets from pre-RT MRI contoured by experienced physicians are provided. <br>
DOI: 10.6084/m9.figshare.9943310
title: Data source file including western blots

description: This file includes data sources for each figure including western blots
DOI: 10.6084/m9.figshare.9943310.v2
title: Data source file including western blots

description: This file includes data sources for each figure including western blots
DOI: 10.6084/m9.figshare.9943292
title: data for 'Evaluation and improvement of radiometer clear-sky data'

description: the clear-sky LV2 products (profiles of atmospheric temperature and humidity) filtered through a radiometer in Beijing during the 24 months from Jan. 2010 to Jan. 2011
DOI: 10.6084/m9.figshare.9943301
title: MBD-NL: Data

description: Data for "Density-Functional Model for van der Waals Interactions: Unifying Atomic Approaches with Nonlocal Functionals"<br>
DOI: 10.6084/m9.figshare.9943292.v1
title: data for 'Evaluation and improvement of radiometer clear-sky data'

description: the clear-sky LV2 products (profiles of atmospheric temperature and humidity) filtered through a radiometer in Beijing during the 24 months from Jan. 2010 to Jan. 2011
DOI: 10.6084/m9.figshare.9943181
title: Shifting spaces: which disparity or dissimilarity metrics best summarise occupancy in multidimensional spaces?

description: Raw data set used in "Shifting spaces: which disparity or dissimilarity metrics best summarise occupancy in multidimensional spaces?".<br>The raw data is from:<br>Beck, R. M., & Lee, M. S. (2014). Ancient dates or accelerated rates? Morphological clocks and the antiquity of placental mammals. Proceedings of the Royal Society B: Biological Sciences, 281(1793), 20141278.<br><br>Wright, D. F. (2017). Bayesian estimation of fossil phylogenies and the evolution of early to middle Paleozoic crinoids (Echinodermata). Journal of Paleontology, 91(4), 799-814.<br><br>Marcy, A. E., Hadly, E. A., Sherratt, E., Garland, K., & Weisbecker, V. (2016). Getting a head in hard soils: convergent skull evolution and divergent allometric patterns explain shape variation in a highly diverse genus of pocket gophers (Thomomys). BMC evolutionary biology, 16(1), 207.<br><br>Hopkins, M.J. and Pearson, J.K., 2016. Non-linear ontogenetic shape change in Cryptolithus tesselatus (Trilobita) using three-dimensional geometric morphometrics. Palaeontologia Electronica, 19(3), pp.1-54.<br><br>Jones, N. T., Germain, R. M., Grainger, T. N., Hall, A. M., Baldwin, L., & Gilbert, B. (2015). Dispersal mode mediates the effect of patch size and patch connectivity on metacommunity diversity. Journal of Ecology, 103(4), 935-944.<br><br>Healy, K., Ezard, T.H., Jones, O.R., Salguero-Gomez, R. and Buckley, Y.M., 2019. Animal life history is shaped by the pace of life and the distribution of age-specific mortality and reproduction. Nature ecology & evolution, p.1.<br><br>
DOI: 10.6084/m9.figshare.9943310.v1
title: Data source file including western blots

description: This file includes data sources for each figure including western blots
DOI: 10.6084/m9.figshare.9943181.v1
title: Shifting spaces: which disparity or dissimilarity metrics best summarise occupancy in multidimensional spaces?

description: Raw data set used in "Shifting spaces: which disparity or dissimilarity metrics best summarise occupancy in multidimensional spaces?".<br>The raw data is from:<br>Beck, R. M., & Lee, M. S. (2014). Ancient dates or accelerated rates? Morphological clocks and the antiquity of placental mammals. Proceedings of the Royal Society B: Biological Sciences, 281(1793), 20141278.<br><br>Wright, D. F. (2017). Bayesian estimation of fossil phylogenies and the evolution of early to middle Paleozoic crinoids (Echinodermata). Journal of Paleontology, 91(4), 799-814.<br><br>Marcy, A. E., Hadly, E. A., Sherratt, E., Garland, K., & Weisbecker, V. (2016). Getting a head in hard soils: convergent skull evolution and divergent allometric patterns explain shape variation in a highly diverse genus of pocket gophers (Thomomys). BMC evolutionary biology, 16(1), 207.<br><br>Hopkins, M.J. and Pearson, J.K., 2016. Non-linear ontogenetic shape change in Cryptolithus tesselatus (Trilobita) using three-dimensional geometric morphometrics. Palaeontologia Electronica, 19(3), pp.1-54.<br><br>Jones, N. T., Germain, R. M., Grainger, T. N., Hall, A. M., Baldwin, L., & Gilbert, B. (2015). Dispersal mode mediates the effect of patch size and patch connectivity on metacommunity diversity. Journal of Ecology, 103(4), 935-944.<br><br>Healy, K., Ezard, T.H., Jones, O.R., Salguero-Gomez, R. and Buckley, Y.M., 2019. Animal life history is shaped by the pace of life and the distribution of age-specific mortality and reproduction. Nature ecology & evolution, p.1.<br><br>
DOI: 10.6084/m9.figshare.9943253
title: Data set FGF23.xlsx

description: Data set from both inpatient and outpatient management; containing numerical values of serum phosphate, PTH, corrected calcium and the therapy utilised to correct said hypophosphataemia
DOI: 10.6084/m9.figshare.9943253.v1
title: Data set FGF23.xlsx

description: Data set from both inpatient and outpatient management; containing numerical values of serum phosphate, PTH, corrected calcium and the therapy utilised to correct said hypophosphataemia
DOI: 10.6084/m9.figshare.9943064
title: dns-requests.csv.gz

description: this dataset contains almost 170 million DNS Cname and A requests.
DOI: 10.6084/m9.figshare.9943046
title: reprokwyk Re-Executable Example

description: This is an example shared (published) re-executable example of a simple docker container (kwyk) process (cortical parcellation and segmentation) on a structural MRI image.
DOI: 10.6084/m9.figshare.9943046.v1
title: reprokwyk Re-Executable Example

description: This is an example shared (published) re-executable example of a simple docker container (kwyk) process (cortical parcellation and segmentation) on a structural MRI image.
DOI: 10.6084/m9.figshare.9942914
title: test_iris_subtract_bg_flat_cal.fits

description: Expected pipeline output for integration testing
DOI: 10.6084/m9.figshare.9942914.v1
title: test_iris_subtract_bg_flat_cal.fits

description: Expected pipeline output for integration testing
DOI: 10.6084/m9.figshare.9942857
title: HIV adherence dataset for Figshare AIDs CARE.sav

description: Dataset for an online study investigating the potentially important role of psychological flexibility in adherence to antiretroviral therapy in people living with HIV.
DOI: 10.6084/m9.figshare.9942851
title: AU data from Stabilizing gold nanoparticles for use in X-ray computed tomography imaging of soil systems

description: This investigation establishes a system of gold nanoparticles that show good colloidal stability as an X-ray computed tomography (XCT) contrast agent under soil conditions. Gold nanoparticles offer numerous beneficial traits for experiments in biology including: comparatively minimal phytotoxicity, X-ray attenuation of the material and the capacity for functionalization. However, soil salinity, acidity and surface charges can induce aggregation and destabilize gold nanoparticles, hence in biomedical applications polymer coatings are commonly applied to gold nanoparticles to enhance stability in the <i>in vivo</i> environment. Here we first demonstrate non-coated nanoparticles aggregate in soil-water solutions. We then show coating with a polyethylene glycol (PEG) layer prevents this aggregation. To demonstrate this, PEG-coated nanoparticles were drawn through flow columns containing soil and were shown to be stable; this is in contrast with control experiments using silica and alumina-packed columns. We further determined that a suspension of coated gold nanoparticles which fully saturated soil maintained stability over at least 5 days. Finally, we used time resolved XCT imaging and image based models to approximate nanoparticle diffusion as similar to that of other typical plant nutrients diffusing in water. Together, these results establish the PEGylated gold nanoparticles as potential contrast agents for XCT imaging in soil.
DOI: 10.6084/m9.figshare.9942848
title: READ ME Experimental Dataset from Stabilizing gold nanoparticles for use in X-ray computed tomography imaging of soil systems

description: This investigation establishes a system of gold nanoparticles that show good colloidal stability as an X-ray computed tomography (XCT) contrast agent under soil conditions. Gold nanoparticles offer numerous beneficial traits for experiments in biology including: comparatively minimal phytotoxicity, X-ray attenuation of the material and the capacity for functionalization. However, soil salinity, acidity and surface charges can induce aggregation and destabilize gold nanoparticles, hence in biomedical applications polymer coatings are commonly applied to gold nanoparticles to enhance stability in the <i>in vivo</i> environment. Here we first demonstrate non-coated nanoparticles aggregate in soil-water solutions. We then show coating with a polyethylene glycol (PEG) layer prevents this aggregation. To demonstrate this, PEG-coated nanoparticles were drawn through flow columns containing soil and were shown to be stable; this is in contrast with control experiments using silica and alumina-packed columns. We further determined that a suspension of coated gold nanoparticles which fully saturated soil maintained stability over at least 5 days. Finally, we used time resolved XCT imaging and image based models to approximate nanoparticle diffusion as similar to that of other typical plant nutrients diffusing in water. Together, these results establish the PEGylated gold nanoparticles as potential contrast agents for XCT imaging in soil.