cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p90pg34s
title: Tidal marsh biomass field plot and remote sensing datasets for six regions in the conterminous United States (ver. 2.0, June 2020)

description: Remote sensing based maps of tidal marshes, both of their extents and carbon stocks, have the potential to play a key role in conducting greenhouse gas inventories and implementing climate mitigation policies. Our objective was to generate a single remote sensing model of tidal marsh aboveground biomass and carbon that represents nationally diverse tidal marshes within the conterminous United States (CONUS). To meet this objective we developed the first national-scale dataset of aboveground tidal marsh biomass, species composition, and aboveground plant carbon content (%C) from six CONUS regions: Cape Cod, MA, Chesapeake Bay, MD, Everglades, FL, Mississippi Delta, LA, San Francisco Bay, CA, and Puget Sound, WA. We tested how plant community composition and vegetation structure differences across estuaries influence model development, and whether data from multiple sensors, in particular Sentinel-1 C-band synthetic aperture radar and Landsat, can improve model performance. The final model, driven by six Landsat vegetation indices and with the soil adjusted vegetation index as the most important (n=409, RMSE=464 g/m2, 12.2% normalized RMSE), successfully predicted biomass and carbon for a range of marsh plant functional types defined by height, leaf angle and growth form. Model error was reduced by scaling field measured biomass by Landsat fraction green vegetation derived from object-based classification of National Agriculture Imagery Program imagery. We generated 30m resolution biomass maps for estuarine and palustrine emergent tidal marshes as indicated by a modified NOAA Coastal Change Analysis Program map for each region. With a mean plant %C of 44.1% (n=1384, 95% C.I.=43.99% - 44.37%) we estimated mean aboveground carbon densities (Mg/ha) and total carbon stocks for each wetland type for each region. We applied a multivariate delta method to calculate uncertainties in regional carbon estimates that considered standard error in map area, mean biomass and mean %C. The original version 1.0 of the dataset can be obtained by contacting kbyrd@usgs.gov. Version 1.0: 2017-12-14, https://doi.org/10.5066/F77943K8 Version 2.0: 2020-06-01, https://doi.org/10.5066/P90PG34S
DOI: 10.11577/1631284
title: Polysaccharide-Based Injection Matrix for Serial Crystallography

description: Please check the README file for more information about the dataset.
DOI: 10.11577/1631286
title: Polysaccharide-Based Injection Matrix for Serial Crystallography

description: Please check the README file for more information about the dataset.
DOI: 10.11577/1631287
title: TBD

description: Please check the README file for more information about the dataset.
DOI: 10.11577/1631289
title: 3D-MiXD: 3D-printed X-ray-compatible microfluidic devices for rapid, low-consumption serial synchrotron crystallography data collection in flow

description: Please check the README.txt file from the supplementary files for more information about the dataset.
DOI: 10.11577/1631290
title: 3D-MiXD: 3D-printed X-ray-compatible microfluidic devices for rapid, low-consumption serial synchrotron crystallography data collection in flow

description: Please check the README.txt file from the supplementary files for more information about the dataset.
DOI: 10.14272/zstipxpowkyobr-uhfffaoysa-n/chmo0000595
title: 13C nuclear magnetic resonance spectroscopy (13C NMR) (2-[2-[2-(2-azidoethoxy)ethoxy]ethoxy]ethylphosphonic acid)
title: InChI=1S/C8H18N3O6P/c9-11-10-1-2-15-3-4-16-5-6-17-7-8-18(12,13)14/h1-8H2,(H2,12,13,14)

description: dataset for 13C nuclear magnetic resonance spectroscopy (13C NMR) 13C NMR (125 MHz, DMSO-d6, ppm) δ = 69.9 (OCH2), 69.8 (OCH2), 69.7 (OCH2), 69.4 (OCH2), 69.4 (OCH2), 65.4 (PCH2CH2O), 50.1 (CH2N3), 28.9 (d, J = 134 Hz, PCH2CH2O).
DOI: 10.14272/zstipxpowkyobr-uhfffaoysa-n/chmo0000739
title: 31P nuclear magnetic resonance spectroscopy (31P NMR) (2-[2-[2-(2-azidoethoxy)ethoxy]ethoxy]ethylphosphonic acid)
title: InChI=1S/C8H18N3O6P/c9-11-10-1-2-15-3-4-16-5-6-17-7-8-18(12,13)14/h1-8H2,(H2,12,13,14)

description: dataset for 31P nuclear magnetic resonance spectroscopy (31P NMR) 31P NMR (202 MHz, ppm) δ = 27.6 (P(O)(OH)2).
DOI: 10.14457/mu.res.2001.17
title: Genetics and physiological characterization of genes involve in detoxification of organic hydroperoxides in phytopathogen, Xanthomonas.
DOI: 10.14457/mu.res.2018.45
title: Crystallization, growth, and morphology control under high humidity condition of 2-dimensional perovskite towards next generation optoelectronic devices
DOI: 10.17632/47wnzm476t.1
title: Collaboration

description: Materials on collaborative learning
DOI: 10.17632/jxxpc9t732.1
title: SITH-1

description: Human herpesvirus 6B greatly increases risk of depression by activating hypothalamic-pituitary-adrenal axis during latent phase of infection.
DOI: 10.17632/nxj6wzz2h3.1
title: Moving Bed Bio Reactor

description: Configuration and characteristics of MBBRs, operation of MBBRs
DOI: 10.25386/genetics.12404324
title: Supplemental Material for Zhang et al., 2020

description: Supplemental Table 1, Figures S1 - S16. <br>
DOI: 10.25386/genetics.12404324.v1
title: Supplemental Material for Zhang et al., 2020

description: Supplemental Table 1, Figures S1 - S16. <br>
DOI: 10.6073/pasta/3e9994ffd67f25d761467f103b0a0d42
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: Daily summary data: 2013 - ongoing

description: Daily summary data at NPP T-TAYL met station. Average/maximum/minimum air temperature; average/maximum relative humidity and wind speed and average wind direction. These are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6073/pasta/5a8ec6adccce58245c2a45722ea0237f
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: 1-hour summary data: 2013 - ongoing

description: Hourly summary data at NPP T-TAYL met station. Average/maximum/minimum air temperature; average relative humidity and wind direction; average/maximum wind speed. These are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6073/pasta/62c95bb755a706caf0e76fd575d65d7f
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: 30-minute summary data: 2013 - ongoing

description: 30-minute summary data at NPP T-TAYL met station. Average air temperature, relative humidity, wind speed and wind direction are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.14457/mu.res.2001.18
title: The dengue virus protease complex NS2B/NS3 - A novel target for the structure-based design of improved antiviral agents
DOI: 10.14457/mu.res.2015.81
title: Modelling a purification of biomolecules utilizing nanoporous material
DOI: 10.14457/mu.res.2016.40
title: Effects of iron chelators on the expression of iron transport machineries in the duodenum of iron-loaded thalassemic mouse models
DOI: 10.14457/mu.res.2017.46
title: NIR organic sensitizer based on dihydroindolo[3,2-b]indole structure for dye-sensitized solar cells
DOI: 10.14457/mu.res.2017.47
title: Characterization and localization of neuropeptide F, and its applications in growth, ovarian maturation and spawning of the female freshwater prawn, Macrobrachium rosenbergii
DOI: 10.14457/mu.res.2017.48
title: Targeting intracellular membrane trafficking to combat dengue virus
DOI: 10.14457/mu.res.2017.49
title: Construction of pseudocodeword-free codes and lattice codes
DOI: 10.14457/mu.res.2018.46
title: Investigation on the control of protonation status of C4a-(hydro)peroxyflavin in bacterial luciferases with fast and slow light decay kinetics
DOI: 10.15468/anh925
title: Plant occurrences on small islands in the Raja Ampat Archipelago, Indonesia

description: This dataset holds information of woody plants on 60 small tropical islands located in the Raja Ampat archipelago in Indonesia. The dataset includes incidence data for 57 species.
DOI: 10.17632/46z3w8y9pt.2
title: In silico analysis of potential SARS-CoV-2 main protease inhibitors Nelfinavir and Epirubicin

description: Inhibiting the main proteasome of severe acute respiratory syndrome–coronavirus 2 (SARS-CoV-2) may serve as a treatment option for patients suffering from COVID-19. Inhibition of the main proteasome (SARS-CoV-2 Mpro) may improve patient outcomes and recovery through blocking viral replication and assembly. A literature review of potential drug treatments for COVID-19 included Nelfinavir, an HIV antiviral, and Epirubicin, an anthracycline and topoisomerase inhibitor. The mechanism of action for both drugs includes binding to SARS-CoV-2 Mpro. These data highlight in-silico binding pose energy predictions of SARS-CoV-2 Mpro (receptor) each of the two drug targets (ligands) using a Generic Evolutionary Method for Molecular Docking (iGEMDOCK). In-silico screening provides highly accurate, reproducible complex-ligand binding affinity prediction data. These data are derived from a population size of 200 and 70 docking generation trials. The 3-D Protein Data Bank (PDB) structure of the main proteasome (SARS-CoV-2 Mpro) for this investigation was derived from the RCSB Protein Data Bank (PDB ID: 6LU7). The 3-D structures of Nelfinavir and Epirubicin were derived from the PubChem database (PubChem CIDs 64143, 41867 respectively). The 3-D structures were converted from 3D conformer SDF files to Protein Data Bank (PDB) formatting through OpenBabble. The data show Nelfinavir as outcompeting Epirubicin in binding to the main proteasome (SARS-CoV-2 Mpro). The complex formation with Nelfinavir was more energetically favorable than that with Epirubicin. The data include relevant binding site residues and energy values, in units of kcal/mol. A composite of van der Waals forces, hydrogen bonding, and electrostatic charge provide the energy values.
DOI: 10.17632/52kj9yzx5j.2
title: How the rise in commodity house prices curbs the spatial agglomeration of the financial industry in developing countries: Evidence from China

description: Using 182 prefecture- and higher-level cities in China as the research focus, we intended to examine the effect of changes in commodity housing prices on the spatial agglomeration of the financial industry between 2006 and 2013. The spatial agglomeration index of the financial industry was calculated based on the number of employees at the end of each year provided by the China City Statistical Yearbook. The data of controlled and mediating variables were extracted from the China Population Statistics Yearbook and the Statistical Yearbook of Chinese Investment in Fixed Assets. The relevant price index data were extracted from the China Statistical Yearbook.
DOI: 10.17632/mkb74kmpzt.1
title: Saltwater Intrusion into the Valdivia River Estuary (40°S). Fondecyt 1171171

description: These data are derived from the project CONICYT/FONDECYT (grant number: 1171171) entitled "Seawater intrusions into the Valdivia-Tornagaleones estuarine system today and under future scenarios with increasing greenhouse-gas concentrations" The first sheet corresponds to records every 5 minutes of salinity and depth derived from a CTD installed at the bottom of the Río Valdivia (73,278°W, 39,8511°S) from November, 22, 2017 to July, 31, 2018. The CTD’s conductivity sensor unfortunately was configured for the range 13 a 63 mS cm-1, meaning that only salinities above about 9 PSU, depending on the river’s bottom temperature could be measured. The following sheets are hydrographic measurements, CTD casts, which were carried out along the central axes of the Valdivia river estuary between November 2017 and August 2018 just covering all four seasons of the year. CTD profiles were measured at 14 about equally spaced stations along the Valdivia river estuary during both, spring and neap tide periods of all seasons. The profiles were taken with a horizontally configured and mounted pumped Seabird 25 CTD, which allowed a slow sampling from close to the surface to close to the bottom. The raw data were processed following the manufactures guidelines and were averaged to a vertical resolution of 0.25 m. Only pressure and salinity (PSU) are available. The dates of the individual short cruises involved were 29/11/2017 (sheet 2017_11_29_spring_season_neap_t), 06/12/2017 (sheet 2017_12_06_spring_season_spring), 11/01/2018 (sheet 2018_01_11_summer_season_neap_t), 01/02/2018 (sheet 2018_02_01_summer_season_spring), 08/05/2018 (sheet 2018_05_08_fall_season_neap_tid), 17/05/2018 (sheet 2018_05_17_fall_season_spring_t), 19/08/2018 (sheet 2018_08_19_winter_season_neap_t), 12/08/2018 (sheet 2018_08_12_winter_season_spring)
DOI: 10.17632/mvmcpwvs4k.1
title: Experimental data of free convection heat transfer for 12.7 and 25 um horizontal wires in rarefied atmospheres

description: When free convection is to be calculated for very thin wires in rarefied atmospheres, the Rayleigh number becomes very small. At these small Rayleigh numbers, available correlations are no longer applicable and there is also a lack of published experimental data. Therefore, new tests were performed using 12.7 and 25 um horizontal wires at low pressures. The wires were heated using electrical current and the temperature of the wires was calculated using the electrical resistance temperature coefficient. The heat transfer parameters and non-dimensional numbers were obtained using usual theoretical analysis. The gathered experimental data show that the Knudsen number must be incorporated in order to reliably describe the heat transfer in above-mentioned conditions. Data are in CSV format with utf-8 encoding. The header of each columns is the variable's name as follows: Gr: Grashof number Pr: Parndtl number Nu: Nusselt number Kn: Knudsen number h: heat transfer coefficient ( W/(m**2 K) ) Tw: wire's temperature (K) Ti: air's temperature (K) p: pressure (Pa) d: wire's diameter (m) L: wire's length (m)
DOI: 10.6073/pasta/48ec5221db30c5177bc5f661e9a952df
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: 1-second summary precipitation data: 2013 - ongoing

description: 1-second summary precipitation data at NPP T-TAYL met station. Total precipitation per second is recorded only if there is measurable precipitation. This is recorded at an automated meteorological station installed at Jornada LTER NPP T-TAYL site.. This climate station is operated by the Jornada LTER Program. IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping bucket rain gauge. If there is missing data due to equipment or other problems, there will be no indication of this within this dataset. The user needs to review precipitation values in the 30 minute or hourly summary datasets to determine if there are missing data in this 1 second detailed precipitation dataset. Reference the package i.d.'s knb-lter-jrn.210437029, knb-lter-jrn.210437044, and knb-lter-jrn.210437059 for the NPP T-TAYL met station 30 minute, hourly, and daily summary datasets, respectively. This is an ONGOING dataset.
DOI: 10.14457/mu.res.2001.19
title: The organization and regulation of class I Glutathione S-Transferase (GST) genes in the Thai malaria vector Anopheles dirus
DOI: 10.14457/mu.res.2013.78
title: Elucidating the structure and function of the binary toxin from Bacillus sphaericus
DOI: 10.14457/mu.res.2015.82
title: Surface modification of polyethylene film by covalent layer-by-layer assembly using polyethyleneglycol and polyethylene imine, as a tool to detect lead (Pb) contaminants
DOI: 10.14457/mu.res.2016.41
title: Fetal programming of brain development by maternal glucocorticoids: the possibility for reprogramming
DOI: 10.14457/mu.res.2017.50
title: Synthesis of quorum quenching molecularly imprinted polymer coated bacterial cellulose for biomedical application
DOI: 10.14457/mu.res.2017.51
title: Dextran-based polymeric particle for bioactive peptides delivery
DOI: 10.14457/mu.res.2018.47
title: Effect of fatty acid oxidation on the mitochondrial respiratory chain through the respiratory chain supercomplex formation in Caenorhabditis elegans
DOI: 10.15482/usda.adc/1518735
title: Data from: Aerosol transmission from infected swine to ferrets of an H3N2 virus collected from an agricultural fair and associated with human variant infections

description: A controlled influenza A virus transmission experiment was conducted in biosafety level 2 containment from January 23, 2018- February 13, 2018 assessing the respiratory droplet transmission efficiency of A(H3N2)/swine/Ohio/A01354299/2017 from experimentally inoculated pigs to naïve, contact ferrets. This experimental setting models the human-swine interface at agricultural fairs, where human infection with influenza viruses of swine origin has been well documented. Five pigs were housed in a standard enclosure and four ferrets were housed in isolators placed 7.5cm from the pig enclosure. Nasal swab samples from pigs were collected on 0, 1, 3, and 5 days post infection and nasal wash samples from ferrets were collected 0, 2, 4, 6, 8, and 15 days post contact. The whole genome sequences of 15 swine and 12 ferret virus isolates were obtained from respiratory samples cultured on Madin-Darby Canine Kidney cells. Sequencing was performed on an Illumina MiSeq platform and consensus sequences for each gene segment were generated using in-house software at the USDA-APHIS National Veterinary Services Laboratory.
DOI: 10.15482/usda.adc/1518736
title: Raw Sequences of 17 Aspergillus Genomes from Ethiopia

description: Raw genome sequencing data of 17 isolates of Aspergillus flavus and Aspergillus parasiticus collected from peanuts from Ethiopia. These isolates were selected as representative of the genetic diversity of Aspergillus section Flavi found colonizing peanut seeds in four peanut-farming districts of Ethiopia, these are Darolabu, Gursum, Fedis, and Babile.
DOI: 10.17632/xbf7rf2h4m.1
title: Power Peaking Factor in a Boron-free Small Modular Reactor as a Function of Control Rod Banks Positions

description: Banks C1 and C2 positions and respective Power Peaking Factor.
DOI: 10.5281/zenodo.3595207
title: Data & example videos: Exploring effects of sound on the time budget of fishes: an experimental approach with captive cod

description: Data abstract: The daily proportions of time each individual fish spent foraging, swimming and being stationary, this data was used for the analysis in the reference below. Video abstract: Some example video clips from which the behavioural state of both individuals was scored. Conference proceeding abstract: To estimate population level effects of anthropogenic sound on fish, data on energy intake and expenditure is needed. We present an experimental design of a controlled behavioural experiment that allows to collect relatively long-term data on foraging and swimming behaviour of Atlantic cod during sound exposures. Data on such behavioural states can be used as proxies for energy intake and expenditure. The Atlantic cod exhibited natural foraging behaviour in the experimental basins and the design allowed for efficient scoring of the behaviour throughout the 6-day trials. We conducted a pilot of three trials and share the experimental design to encourage other researchers to collect data on (proxies for) energy intake and expenditure to aid estimation of population level effects of sound exposures. Reference: Hubert, J., Wille, D.A., Slabbekoorn, H. (2020) Exploring effects of sound on the time budget of fishes: an experimental approach with captive cod. Proceedings of Meetings on Acoustics. 37 (1). 010012. DOI:10.1121/2.0001253.
description: This work was supported by the E&P Sound & Marine Life Joint Industry Programme.
DOI: 10.5281/zenodo.3595208
title: Data & example videos: Exploring effects of sound on the time budget of fishes: an experimental approach with captive cod

description: Data abstract: The daily proportions of time each individual fish spent foraging, swimming and being stationary, this data was used for the analysis in the reference below. Video abstract: Some example video clips from which the behavioural state of both individuals was scored. Conference proceeding abstract: To estimate population level effects of anthropogenic sound on fish, data on energy intake and expenditure is needed. We present an experimental design of a controlled behavioural experiment that allows to collect relatively long-term data on foraging and swimming behaviour of Atlantic cod during sound exposures. Data on such behavioural states can be used as proxies for energy intake and expenditure. The Atlantic cod exhibited natural foraging behaviour in the experimental basins and the design allowed for efficient scoring of the behaviour throughout the 6-day trials. We conducted a pilot of three trials and share the experimental design to encourage other researchers to collect data on (proxies for) energy intake and expenditure to aid estimation of population level effects of sound exposures. Reference: Hubert, J., Wille, D.A., Slabbekoorn, H. (2020) Exploring effects of sound on the time budget of fishes: an experimental approach with captive cod. Proceedings of Meetings on Acoustics. 37 (1). 010012. DOI:10.1121/2.0001253.
description: This work was supported by the E&P Sound & Marine Life Joint Industry Programme.
DOI: 10.6073/pasta/b04882f1016e8a0e890c57da19e2ab41
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily average of 30-minute Volumetric Water Content at NPP T-TAYL met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured and calculated at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. The daily average at 3 soil depths is calculated from measurements made every 30 minutes at 10 cm, 20 cm, and 30 cm. This is an ONGOING dataset.
DOI: 10.14457/mu.res.2001.20
title: Molecular pathologic studies of the anion exchanger 1 mutation as the cause of distal renal tubular acidosis in Thailand
DOI: 10.14457/mu.res.2005.47
title: Functional Specialization of the Human Auditory Cortex for Processing of Lexicality in Thai Language
DOI: 10.14457/mu.res.2005.48
title: Surface remodeling of Burkholderia pseudomallei lipopolysaccharide: an implication in pathogenesis of infection
DOI: 10.14457/mu.res.2006.38
title: Effect of exercise training on insulin action in rat skeletal muscle subjected to oxidative stress
DOI: 10.14457/mu.res.2017.52
title: Novel approaches for treatment of allergy by using Tregitopes and immunosuppressive protein of parasite
DOI: 10.14457/mu.res.2017.53
title: Expression profiling of cassava genes during storage root initiation
DOI: 10.14457/mu.res.2017.54
title: Exploring the structure-function relationship of hemoglobins for therapeutic applications
DOI: 10.14457/mu.res.2018.48
title: Development of nanosized drug delivery system for alpha-mangostin to improve its bioavailability