cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8046543
title: [IO Islamic 3213] ديوان سلمان

description: <strong>Dîwân-i-Salmân.</strong> <strong>This manuscript is now IO Islamic 1241 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 3213 here with notations and hyperlinks].</strong> 1241 The same. This copy, which appears to have been made from one of the earliest collections of Salmân’s poems, but has unfortunately a lacuna after fol. 11, begins with a long artificial ḳaṣîdah ( قصيدۀ مصنوع), on fol. 1<sup>b</sup>, of the same manner of taushîḥ as those poems of Ahlî Shîrâzî, described at length in the Catalogue of the Bodleian Library, coll. 652, 653. The chief subtlety is, that all the words of two and two, or three and three baits, written in red ink, form together a new distich, usually a mathnawî-bait, and every bait of this kind represents a different metre and a different tropical figure; for instance, from the first two baits of the ḳaṣîdah: صواى صفوت رويت بريخت آب بهار هواى جنّت كويت ببيخت مشك تتار اگر خبر زصفاى تو گلستان دارد گل از حياى رخت جاودان ندارد بار There springs this mathnawî-bait in the metre of هزج مثمّن سالم, and representing التّرصيع و الاشتقاق: صواى صفوت رويت صفات گلستان دارد هواى جنّت كويت حيات جاودان دارد، Besides, (I) all the initial letters of the baits give a ḳiṭ’ah of three distichs, containing a dedication to the Wazîr Ghiyâth-aldîn Muḥammad; (2) from the حشو, i.e. specially-selected letters, of the words in all the first hemistiches springs a ḳiṭ’ah of eight distichs, in which no <em>alif</em> appears; (3) from the حشو of the words in all the second hemistichs springs another ḳiṭ’ah of seven distichs, in which no diacritical point appears; and (4) by another arrangement of select letters, a ghazal of five distichs is formed. Comparing this ḳaṣîdah of Salmân’s with the above-mentioned three ḳaṣîdas of Ahlî Shîrâzî, it is evident that the latter based his poems on that of his predecessor to such an extent that it may almost be called a plagiarism. The other contents of the dîwân are: Ḳaṣîdas, tarjî’bands, and ḳiṭ’as, without any order, beginning abruptly, on fol.12<sup>a</sup>, in the middle of a poem (one leaf being left blank); the initial poem of the following copy (No. 2458), viz. در درج در عقيق الخ, is found here on fol. 30<sup>a</sup>. Ghazals, likewise without any order, on fol. 202<sup>b</sup>, beginning: تا تو دل در بند جان دارى و جان در بند تن چون مرا در خویش گیری در کنار خویشتن Rubâ’îs, on fol. 266<sup>b</sup>, beginning: اى كارگذاران الخ . Some words and whole lines are occasionally left blank, on ff. 19<sup>a</sup>, 19<sup>b</sup>, 84<sup>a</sup>, and 268<sup>b</sup>-274<sup>a</sup>. No date. A seal from A.D. 1799 on the last page. No. 3213, ff. 274, 2 coll., each ll. 19; Nasta’lîḳ; illuminated frontispiece on fol. 1<sup>b</sup>; size, 9½ in. by 6 in.
DOI: 10.5281/zenodo.8046542
title: [IO Islamic 3213] ديوان سلمان

description: <strong>Dîwân-i-Salmân.</strong> <strong>This manuscript is now IO Islamic 1241 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 3213 here with notations and hyperlinks].</strong> 1241 The same. This copy, which appears to have been made from one of the earliest collections of Salmân’s poems, but has unfortunately a lacuna after fol. 11, begins with a long artificial ḳaṣîdah ( قصيدۀ مصنوع), on fol. 1<sup>b</sup>, of the same manner of taushîḥ as those poems of Ahlî Shîrâzî, described at length in the Catalogue of the Bodleian Library, coll. 652, 653. The chief subtlety is, that all the words of two and two, or three and three baits, written in red ink, form together a new distich, usually a mathnawî-bait, and every bait of this kind represents a different metre and a different tropical figure; for instance, from the first two baits of the ḳaṣîdah: صواى صفوت رويت بريخت آب بهار هواى جنّت كويت ببيخت مشك تتار اگر خبر زصفاى تو گلستان دارد گل از حياى رخت جاودان ندارد بار There springs this mathnawî-bait in the metre of هزج مثمّن سالم, and representing التّرصيع و الاشتقاق: صواى صفوت رويت صفات گلستان دارد هواى جنّت كويت حيات جاودان دارد، Besides, (I) all the initial letters of the baits give a ḳiṭ’ah of three distichs, containing a dedication to the Wazîr Ghiyâth-aldîn Muḥammad; (2) from the حشو, i.e. specially-selected letters, of the words in all the first hemistiches springs a ḳiṭ’ah of eight distichs, in which no <em>alif</em> appears; (3) from the حشو of the words in all the second hemistichs springs another ḳiṭ’ah of seven distichs, in which no diacritical point appears; and (4) by another arrangement of select letters, a ghazal of five distichs is formed. Comparing this ḳaṣîdah of Salmân’s with the above-mentioned three ḳaṣîdas of Ahlî Shîrâzî, it is evident that the latter based his poems on that of his predecessor to such an extent that it may almost be called a plagiarism. The other contents of the dîwân are: Ḳaṣîdas, tarjî’bands, and ḳiṭ’as, without any order, beginning abruptly, on fol.12<sup>a</sup>, in the middle of a poem (one leaf being left blank); the initial poem of the following copy (No. 2458), viz. در درج در عقيق الخ, is found here on fol. 30<sup>a</sup>. Ghazals, likewise without any order, on fol. 202<sup>b</sup>, beginning: تا تو دل در بند جان دارى و جان در بند تن چون مرا در خویش گیری در کنار خویشتن Rubâ’îs, on fol. 266<sup>b</sup>, beginning: اى كارگذاران الخ . Some words and whole lines are occasionally left blank, on ff. 19<sup>a</sup>, 19<sup>b</sup>, 84<sup>a</sup>, and 268<sup>b</sup>-274<sup>a</sup>. No date. A seal from A.D. 1799 on the last page. No. 3213, ff. 274, 2 coll., each ll. 19; Nasta’lîḳ; illuminated frontispiece on fol. 1<sup>b</sup>; size, 9½ in. by 6 in.
DOI: 10.5281/zenodo.8046553
title: [IO Islamic 2458] ديوان سلمان

description: <strong>Dîwân-i-Salmân.</strong> <strong>This manuscript is now IO Islamic 1242 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 2458 here with notations and hyperlinks].</strong> 1242 The same. All the parts of this copy, which is likewise defective, begin with poems, different from the initial ones in the preceding copies, viz.: Ḳaṣîdas, tarji’s, and tarkîbbands, without any order, on fol. 1<sup>b</sup>, beginning: در درج در عقيق لبت نقد جان نهاد جنس عزيز يافت بجاى نهان نهاد See Erdmann in Zeitschrift, xv. p. 763. A lacuna after fol. 109. ḳiṭ’as, on fol. 170<sup>b</sup>, beginning: اى زآثار گرد موكب تو الخ. Rubâ’îs, on fol. 194<sup>b</sup>, beginning: شاها زتو كار ملك و دين با نسق است الخ. No date. Slight injuries here and there. No. 2458, ff. 198, 2 coll., each ll. 15; Nasta’lîḳ; size, 9½ in. by 5¾ in.
DOI: 10.5281/zenodo.8046552
title: [IO Islamic 2458] ديوان سلمان

description: <strong>Dîwân-i-Salmân.</strong> <strong>This manuscript is now IO Islamic 1242 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 2458 here with notations and hyperlinks].</strong> 1242 The same. All the parts of this copy, which is likewise defective, begin with poems, different from the initial ones in the preceding copies, viz.: Ḳaṣîdas, tarji’s, and tarkîbbands, without any order, on fol. 1<sup>b</sup>, beginning: در درج در عقيق لبت نقد جان نهاد جنس عزيز يافت بجاى نهان نهاد See Erdmann in Zeitschrift, xv. p. 763. A lacuna after fol. 109. ḳiṭ’as, on fol. 170<sup>b</sup>, beginning: اى زآثار گرد موكب تو الخ. Rubâ’îs, on fol. 194<sup>b</sup>, beginning: شاها زتو كار ملك و دين با نسق است الخ. No date. Slight injuries here and there. No. 2458, ff. 198, 2 coll., each ll. 15; Nasta’lîḳ; size, 9½ in. by 5¾ in.
DOI: 10.5066/p91bt9nz
title: Brook trout abundance within pools of Staunton River and Paine Run in Shenandoah National Park from 2012-2021

description: This Data Release provides brook trout abundance records for pool habitats within 2 streams in Shenandoah National Park (Staunton River and Paine Run). The data were collected with 3-pass backpack electrofishing conducted during baseflow conditions between 2012-2021. This dataset enables spatial analysis of brook trout population responses to drought conditions.
DOI: 10.5281/zenodo.7992162
title: Datasets associated with a study of extensional faulting around Kolumbo Volcano, Aegean Sea

description: This contribution of data includes 56 different data files of various formats, plus one excel file ("Data_Inventory_and_Descriptions_Kolumbo_Faulting.xlsx") which provides all of the necessary metadata for each of the 56 data files. The excel file should be used as a readme file, detailing key information for each file including format, georeferencing information, and relevant software for loading and viewing the data. The excel file also shows how each file is related to an associated figure in a manuscript currently being submitted for peer review. Once that paper is published, this description will be updated with the doi of the paper.
DOI: 10.5281/zenodo.7992161
title: Datasets associated with a study of extensional faulting around Kolumbo Volcano, Aegean Sea

description: This contribution of data includes 56 different data files of various formats, plus one excel file ("Data_Inventory_and_Descriptions_Kolumbo_Faulting.xlsx") which provides all of the necessary metadata for each of the 56 data files. The excel file should be used as a readme file, detailing key information for each file including format, georeferencing information, and relevant software for loading and viewing the data. The excel file also shows how each file is related to an associated figure in a manuscript currently being submitted for peer review. Once that paper is published, this description will be updated with the doi of the paper.
DOI: 10.6084/m9.figshare.23271976
title: Supplemental data file 1 from Environmental and molecular regulation of asexual reproduction in the sea anemone <i>Nematostella vectensis</i>

description: Data from asexual reproduction behavioral experiments.
DOI: 10.6084/m9.figshare.23271976.v1
title: Supplemental data file 1 from Environmental and molecular regulation of asexual reproduction in the sea anemone <i>Nematostella vectensis</i>

description: Data from asexual reproduction behavioral experiments.
DOI: 10.5281/zenodo.7991979
title: Pan-cancer Proteomics Analysis to Identify Tumor-Enriched and Highly Expressed Cell Surface Antigens as Potential Targets for Cancer Therapeutics

description: CPTAC PAN-cancer Data Repository Welcome to the CPTAC PAN-cancer Data Repository! This repository serves as a data repository for the CPTAC PAN-cancer effort, which focuses on cancer target discovery. It contains various data sets related to protein abundance estimation, derived TMT-TPA, iBAQ, iBAQ-derived copy number, and differential protein expression for CPTAC ten indications. ## Contents The repository includes the following data: - FragPipe Output: Protein abundance estimation data generated using the FragPipe software.<br> - Derived TMT-TPA: Data derived from Tandem Mass Tag (TMT) based Total Protein Approach (TPA).<br> - iBAQ: Data representing intensity-based absolute quantification (iBAQ) of proteins.<br> - iBAQ-derived Copy Number: Data derived from iBAQ analysis for copy number estimation.<br> - Differential Protein Expression: Data indicating differential expression of proteins between tumor and NAT. ## Data Organization The data in this repository is organized in a structured manner to facilitate easy access and navigation. The repository structure is as follows: FragPipe/<br> [fragpipe_data_files]<br> Derived_TMT_TPA/<br> [derived_tmt_tpa_data_files]<br> iBAQ/<br> [ibaq_data_files]<br> iBAQ-derived_copy_number/<br> [ibaq_copy_number_data_files]<br> Differential_protein_expression/<br> [differential_expression_data_files]
DOI: 10.5281/zenodo.7991978
title: Pan-cancer Proteomics Analysis to Identify Tumor-Enriched and Highly Expressed Cell Surface Antigens as Potential Targets for Cancer Therapeutics

description: CPTAC PAN-cancer Data Repository Welcome to the CPTAC PAN-cancer Data Repository! This repository serves as a data repository for the CPTAC PAN-cancer effort, which focuses on cancer target discovery. It contains various data sets related to protein abundance estimation, derived TMT-TPA, iBAQ, iBAQ-derived copy number, and differential protein expression for CPTAC ten indications. ## Contents The repository includes the following data: - FragPipe Output: Protein abundance estimation data generated using the FragPipe software.<br> - Derived TMT-TPA: Data derived from Tandem Mass Tag (TMT) based Total Protein Approach (TPA).<br> - iBAQ: Data representing intensity-based absolute quantification (iBAQ) of proteins.<br> - iBAQ-derived Copy Number: Data derived from iBAQ analysis for copy number estimation.<br> - Differential Protein Expression: Data indicating differential expression of proteins between tumor and NAT. ## Data Organization The data in this repository is organized in a structured manner to facilitate easy access and navigation. The repository structure is as follows: FragPipe/<br> [fragpipe_data_files]<br> Derived_TMT_TPA/<br> [derived_tmt_tpa_data_files]<br> iBAQ/<br> [ibaq_data_files]<br> iBAQ-derived_copy_number/<br> [ibaq_copy_number_data_files]<br> Differential_protein_expression/<br> [differential_expression_data_files]
DOI: 10.6084/m9.figshare.23148224.v1
title: MESSES Supplemental Material

description: Supplemental material for MESSES: Software for Transforming Messy Research Datasets into Clean Submissions to Metabolomics Workbench for Public Sharing <br> https://pypi.org/project/messes https://github.com/MoseleyBioinformaticsLab/messes
DOI: 10.6084/m9.figshare.23272058
title: Table S10 Literature Search Results. from Bee pollination services and the burden of biogeography

description: Non-parasitic bee genera visiting cultivated apple, categorised by biogeographic realm and country.
DOI: 10.6084/m9.figshare.23272058.v1
title: Table S10 Literature Search Results. from Bee pollination services and the burden of biogeography

description: Non-parasitic bee genera visiting cultivated apple, categorised by biogeographic realm and country.
DOI: 10.5517/ccdc.csd.cc2fpr2z
title: CCDC 2255221: Experimental Crystal Structure Determination

description: Related Article: D. Vinci, D. Chateigner|2023|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|79|213|doi:10.1107/S205252062300327X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fpr30
title: CCDC 2255222: Experimental Crystal Structure Determination

description: Related Article: D. Vinci, D. Chateigner|2023|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|79|213|doi:10.1107/S205252062300327X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21774812
title: Spatial database of planted forests in East Asia using machine learning (code, training datasets, and models)

description: Training datasets, code, and saved random forests (RF) models to re-produce the main map products (https://doi.org/10.6084/m9.figshare.21774725.v2)
DOI: 10.6084/m9.figshare.21774812.v1
title: Spatial distribution of planted forests in East Asia (code, training datasets, and models)

description: Training datasets, code, and saved random forests (RF) models to re-produce the main map products (https://doi.org/10.6084/m9.figshare.21774725.v1)
DOI: 10.6084/m9.figshare.23272049
title: Pisces dataset

description: This dataset includes all the drug synergy prediction on cell line, drug synergy prediction on xenografts and drug-drug interaction dataset.
DOI: 10.6084/m9.figshare.23272094
title: Phylogenetic matrix from A new dolphin with tusk-like teeth from the late Oligocene of New Zealand indicates evolution of novel feeding strategies

description: Phylogenetic matrix used for study in .nex format
DOI: 10.6084/m9.figshare.23272094.v1
title: Phylogenetic matrix from A new dolphin with tusk-like teeth from the late Oligocene of New Zealand indicates evolution of novel feeding strategies

description: Phylogenetic matrix used for study in .nex format
DOI: 10.15468/q3hjwp
title: Catálogo de especies recolectadas por el Padre Fuertes depositadas en el Herbario USD

description: Este conjunto de datos presenta 331 registros de especímenes pertenecientes a 330 especies recolectados por el Padre Miguel Domingo Fuertes Loren entre los años 1910 a 1912 . Están representandos 176 géneros y 69 familias. La familia Rubiaceae tiene la mayor cantidad de especies (46). El Padre Fuertes herborizó fundamentalmente en la región sur de República Dominicana.
DOI: 10.6084/m9.figshare.23272142
title: Reptile nest database from Can nesting behaviour allow reptiles to adapt to climate change?

description: A compilation of published data on temperatures and depths of reptile nests
DOI: 10.6084/m9.figshare.23272142.v1
title: Reptile nest database from Can nesting behaviour allow reptiles to adapt to climate change?

description: A compilation of published data on temperatures and depths of reptile nests
DOI: 10.6084/m9.figshare.23272145
title: Reptile nest depth database from Can nesting behaviour allow reptiles to adapt to climate change?

description: A compilation of published data on mean depths of reptile nests
DOI: 10.6084/m9.figshare.23272145.v1
title: Reptile nest depth database from Can nesting behaviour allow reptiles to adapt to climate change?

description: A compilation of published data on mean depths of reptile nests
DOI: 10.6084/m9.figshare.18739305
title: Additional file 6 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regeneration

description: Additional file 6: Table S5. The predicted DNA binding sites of che-lincRNAs.
DOI: 10.6084/m9.figshare.14545243
title: Additional file 2 of Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification

description: Additional file 2: Summary statistics of Brassica oleracea genome assemblies.
DOI: 10.6084/m9.figshare.18739305.v1
title: Additional file 6 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regeneration

description: Additional file 6: Table S5. The predicted DNA binding sites of che-lincRNAs.
DOI: 10.6084/m9.figshare.18739327
title: Additional file 2 of Genome-resolved evidence for functionally redundant communities and novel nitrogen fixers in the deyin-1 hydrothermal field, Mid-Atlantic Ridge

description: Additional file 1:. Table S1 Information regarding the samples, metagenomes, and assemblies in the current study. Table S2 219 high-quality MAGs (a) and 615 MAGs (b) obtained in the current study. Table S3 Information regarding the functional gene abundance in the samples TVG10 (a), TVG11 (b), TVG12 (c), and TVG13 (d). The abundance of each gene harbored by each taxon is normalized by RPKM (mapped reads per kilobase scaffolds per million sequenced reads) method. Table S4 Information regarding the abundances of CAZymes and secreted CAZymes in the samples TVG10 (a), TVG11 (b), TVG12 (c), and TVG13 (d). The abundance of each gene harbored by each taxon is normalized by RPKM (mapped reads per kilobase scaffolds per million sequenced reads) method. Table S5 Taxonomic details of this study and reference active and inactive samples that were used in the Figure 2 and S7b. Table S6 The accession ID and taxonomic information of the NifH sequences used in Figure 5a. Supplementary Data 1 Phylogenetic tree of bacterial MAGs based on 120 bacterial marker genes in newick format. The values depicted on the branches are bootstrap values. Supplementary Data 2 Phylogenetic tree of archaeal MAGs based on 122 archaeal marker genes in newick format. The values depicted on the branches are bootstrap values. Supplementary Data 3 Phylogenetic tree of 16S rRNA genes in newick format. The values depicted on the branches are bootstrap values. Supplementary Data 4 Phylogenetic tree of MAGs based on 16 ribosomal protein sequences in newick format. The values depicted on the branches are bootstrap values.
DOI: 10.6084/m9.figshare.12450587.v1
title: Additional file 1 of Human follicular fluid proteome reveals association between overweight status and oocyte maturation abnormality

description: Additional file 1. Additional table.
DOI: 10.6084/m9.figshare.15071401
title: Additional file 2 of Dose approach matter? A meta-analysis of outcomes following transfemoral versus transapical transcatheter aortic valve replacement

description: Additional file 2: Figure S1: Funnel plot of comparison meta-analysis outcomes between TF-TAVR versus TA-TAVR: (A) Major bleeding events; (B) 30-day mortality; (C) Major vascular complications; (D) Pacemaker implantation; (E) Acute kidney injury; (F) Length of hospital stay; (G)Mid-term mortality; (H) 1-year mortality; (I)Stroke. Guideline for methodology: PRISMA 2020_Checklist
DOI: 10.6084/m9.figshare.14545255.v1
title: Additional file 6 of Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification

description: Additional file 6: Statistics of intact LTR-retrotransposons in Korso, OX-heart and Brassica rapa (V3.0) genome assemblies.
DOI: 10.6084/m9.figshare.14544844.v1
title: Additional file 6 of Comparative transcriptomic analysis reveals an association of gibel carp fatty liver with ferroptosis pathway

description: Additional file 6: Table S4 Input and output files in LPIA. Biological pathways (FL_NL_P), biological functions (FL_NL_G) and gene transcriptional response in different conditions (FL_NL_DE) are used in LPIA and the output file (Output_LPIA_FL_NL). NL: normal liver, FL: fatty liver.
DOI: 10.6084/m9.figshare.18739281
title: Additional file 10 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regeneration

description: Additional file 10. Uncropped images.
DOI: 10.17630/4b0c920a-44db-407e-87fa-2cd21b04b4ba
title: Influence of Sulfur Oxidation State and Substituents on Sulfur-Bridged Luminescent Copper(I) Complexes Showing Thermally Activated Delayed Fluorescence (dataset)
DOI: 10.6084/m9.figshare.18739281.v1
title: Additional file 10 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regeneration

description: Additional file 10. Uncropped images.
DOI: 10.6084/m9.figshare.14545249
title: Additional file 4 of Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification

description: Additional file 4:. Summary of RNA-seq data of ‘Korso’ and ‘OX-heart’.