cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3521300
title: Appendix A. A table showing raw detection probabilities of L. v. vulgaris using trapping and environmental DNA surveys across seven sites in Melbourne, Australia; a figure showing mean and 95% credible intervals of the random effects for site, month and day within month, for trapping and environmental DNA methods; and a figure showing mean and 95% credible intervals for regression coefficients describing effects of water depth, rainfall, and temperature on detection probabilities of L. v....

description: A table showing raw detection probabilities of L. v. vulgaris using trapping and environmental DNA surveys across seven sites in Melbourne, Australia; a figure showing mean and 95% credible intervals of the random effects for site, month and day within month, for trapping and environmental DNA methods; and a figure showing mean and 95% credible intervals for regression coefficients describing effects of water depth, rainfall, and temperature on detection probabilities of L. v. vulgaris using traps and environmental DNA sampling.
DOI: 10.6084/m9.figshare.3521297
title: Appendix A. Table of results for the 41 models of Arctic peregrine population dynamics.

description: Table of results for the 41 models of Arctic peregrine population dynamics.
DOI: 10.6084/m9.figshare.3521297.v1
title: Appendix A. Table of results for the 41 models of Arctic peregrine population dynamics.

description: Table of results for the 41 models of Arctic peregrine population dynamics.
DOI: 10.6084/m9.figshare.3521294
title: Appendix A. Response curves of MaxEnt models, showing relationships between suitability for paedomorphic palmate newts (Lissotriton helveticus) and environmental variables (altitude, slope, and percent cover of natural vegetation).

description: Response curves of MaxEnt models, showing relationships between suitability for paedomorphic palmate newts (Lissotriton helveticus) and environmental variables (altitude, slope, and percent cover of natural vegetation).
DOI: 10.6084/m9.figshare.3521294.v1
title: Appendix A. Response curves of MaxEnt models, showing relationships between suitability for paedomorphic palmate newts (Lissotriton helveticus) and environmental variables (altitude, slope, and percent cover of natural vegetation).

description: Response curves of MaxEnt models, showing relationships between suitability for paedomorphic palmate newts (Lissotriton helveticus) and environmental variables (altitude, slope, and percent cover of natural vegetation).
DOI: 10.6084/m9.figshare.3521291
title: Raw spikelist files generated during MEA recordings in experiment 1 in which an shRNA control was used

description: This dataset is comprised of the input files generated by MEA recordings on the Axion Maestro system, called spikelist files. These files can be uploaded into the IGM.MEA analysis pipeline to generate the data files used to produce the figures in the manuscript.The .csv file that is not labelled with "spike_list" is the platemap file that is also necessary to run the analysis pipeline. The platemap file contains the data about the order of the treatment of the wells in each plate.
DOI: 10.6084/m9.figshare.3521291.v1
title: Experiment1_shRNA_control.zip

description: This dataset is comprised of the input files generated by MEA recordings on the Axion Maestro system, called spikelist files. These files can be uploaded into the IGM.MEA analysis pipeline to generate the data used in the manuscript.
DOI: 10.6084/m9.figshare.3521291.v2
title: Experiment1_spikelistfiles_shRNA_control.zip

description: This dataset is comprised of the input files generated by MEA recordings on the Axion Maestro system, called spikelist files. These files can be uploaded into the IGM.MEA analysis pipeline to generate the data used in the manuscript.The csv file not labelled with "spike_list" is the platemap files also necessary to run the analysis pipeline.
DOI: 10.6084/m9.figshare.3521291.v3
title: Experiment1_spikelistfiles_shRNA_control

description: This dataset is comprised of the input files generated by MEA recordings on the Axion Maestro system, called spikelist files. These files can be uploaded into the IGM.MEA analysis pipeline to generate the data used in the manuscript.The csv file not labelled with "spike_list" is the platemap files also necessary to run the analysis pipeline.
DOI: 10.6084/m9.figshare.3521291.v5
title: Raw spikelist files generated during MEA recordings in experiment 1 in which an shRNA control was used

description: This dataset is comprised of the input files generated by MEA recordings on the Axion Maestro system, called spikelist files. These files can be uploaded into the IGM.MEA analysis pipeline to generate the data files used to produce the figures in the manuscript.The .csv file that is not labelled with "spike_list" is the platemap file that is also necessary to run the analysis pipeline. The platemap file contains the data about the order of the treatment of the wells in each plate.
DOI: 10.6084/m9.figshare.3521291.v4
title: Spikelist Files for Experiment 1 (shRNA control)

description: This dataset is comprised of the input files generated by MEA recordings on the Axion Maestro system, called spikelist files. These files can be uploaded into the IGM.MEA analysis pipeline to generate the data files used to produce the figures in the manuscript.The .csv file that is not labelled with "spike_list" is the platemap file that is also necessary to run the analysis pipeline. The platemap file contains the data about the order of the treatment of the wells in each plate.
DOI: 10.6084/m9.figshare.3521288
title: Appendix A. A figure showing movement phases of 15 subadult leopards (12 males and 3 females), Phinda-Mkhuze Complex, South Africa, 2002–2012.

description: A figure showing movement phases of 15 subadult leopards (12 males and 3 females), Phinda-Mkhuze Complex, South Africa, 2002–2012.
DOI: 10.6084/m9.figshare.3521288.v1
title: Appendix A. A figure showing movement phases of 15 subadult leopards (12 males and 3 females), Phinda-Mkhuze Complex, South Africa, 2002–2012.

description: A figure showing movement phases of 15 subadult leopards (12 males and 3 females), Phinda-Mkhuze Complex, South Africa, 2002–2012.
DOI: 10.6084/m9.figshare.3521285
title: Appendix A. Comparing support of the covariates weight and sex in mark-resight models.

description: Comparing support of the covariates weight and sex in mark-resight models.
DOI: 10.6084/m9.figshare.3521285.v1
title: Appendix A. Comparing support of the covariates weight and sex in mark-resight models.

description: Comparing support of the covariates weight and sex in mark-resight models.
DOI: 10.6084/m9.figshare.3521282
title: Appendix B. Results of mark-resight models (Tables B1–B12) and occupancy models (Tables B13–B16) for bobcats and pumas on the Western Slope and Front Range, Colorado, USA.

description: Results of mark-resight models (Tables B1–B12) and occupancy models (Tables B13–B16) for bobcats and pumas on the Western Slope and Front Range, Colorado, USA.
DOI: 10.6084/m9.figshare.3521279
title: Supplement 1. Data used for mark-resight, density, and occupancy analyses.

description: File List data.txt (MD5: 2763d8f75c752f0e190815df66121618) Description The data.txt is a tab-separated file. It contains the data for the mark-resight, density, and occupancy analyses for bobcats, pumas, and their prey on the Western Slope (exurban grid 1 and wildland grid 2) and Front Range (WUI grid 1 and wildland grid 2) grids. Column headings and definitions ch = capture history Time spent on grid (TSOG) = time spent on grid for individual animal based on telemetry locations Weight = weight (kg) of animal Grid = urbanized (0) or wildland (1) sampling grid area HumDev = amount of human influence associated with camera location For values of TSOG used in mark resight analysis, if telemetry data was not available for a particular individual (due to collar malfunction), then the mean value of TSOG across all other animals with functioning collars was used for an individual as a covariate value, but the mean value of TSOG for an animal was excluded when estimating density. For pumas that were captured and marked during camera surveys, their photos were counted as unmarked in mark-resight models, but their telemetry data was used to estimate TSOG for density. Please see manuscript for further details and notes about calculations and data used.
DOI: 10.6084/m9.figshare.3521273
title: Appendix A. Host and parasitoids species and their code numbers in Fig. 2 in the main text.

description: Host and parasitoids species and their code numbers in Fig. 2 in the main text.
DOI: 10.6084/m9.figshare.3521273.v1
title: Appendix A. Host and parasitoids species and their code numbers in Fig. 2 in the main text.

description: Host and parasitoids species and their code numbers in Fig. 2 in the main text.
DOI: 10.6084/m9.figshare.3521270
title: Appendix A. Eco-evolutionary model description; results of the model; a table showing parameter values for the individual-based eco-evolutionary model; and figures showing evolution of the probabilistic maturation reaction norm (PMRN) for Atlantic cod, lake whitefish, and yellow perch, the response to harvest in key population attributes of Atlantic cod, the effects of varying the strength of density-dependent growth on the rate of probabilistic maturation reaction norm (PMRN) evolution, the...

description: Eco-evolutionary model description; results of the model; a table showing parameter values for the individual-based eco-evolutionary model; and figures showing evolution of the probabilistic maturation reaction norm (PMRN) for Atlantic cod, lake whitefish, and yellow perch, the response to harvest in key population attributes of Atlantic cod, the effects of varying the strength of density-dependent growth on the rate of probabilistic maturation reaction norm (PMRN) evolution, the effects of varying the strength of density-dependent growth on the time to population extinction, and trends in population growth rate r for three example harvest rates (20, 40, and 70%).
DOI: 10.6084/m9.figshare.3521270.v1
title: Appendix A. Eco-evolutionary model description; results of the model; a table showing parameter values for the individual-based eco-evolutionary model; and figures showing evolution of the probabilistic maturation reaction norm (PMRN) for Atlantic cod, lake whitefish, and yellow perch, the response to harvest in key population attributes of Atlantic cod, the effects of varying the strength of density-dependent growth on the rate of probabilistic maturation reaction norm (PMRN) evolution, the...

description: Eco-evolutionary model description; results of the model; a table showing parameter values for the individual-based eco-evolutionary model; and figures showing evolution of the probabilistic maturation reaction norm (PMRN) for Atlantic cod, lake whitefish, and yellow perch, the response to harvest in key population attributes of Atlantic cod, the effects of varying the strength of density-dependent growth on the rate of probabilistic maturation reaction norm (PMRN) evolution, the effects of varying the strength of density-dependent growth on the time to population extinction, and trends in population growth rate r for three example harvest rates (20, 40, and 70%).
DOI: 10.6084/m9.figshare.3521267
title: Appendix A. Santa Cruz Island, California, showing the location and extent of areas invaded (orange hatching) by the Argentine ant (L. humile) in 2010, as well as the locations of eight pairs of invaded and uninvaded plots.

description: Santa Cruz Island, California, showing the location and extent of areas invaded (orange hatching) by the Argentine ant (L. humile) in 2010, as well as the locations of eight pairs of invaded and uninvaded plots.
DOI: 10.6084/m9.figshare.3521264
title: Appendix B. Latitude, longitude, and elevation of paired invaded and uninvaded plots.

description: Latitude, longitude, and elevation of paired invaded and uninvaded plots.
DOI: 10.6084/m9.figshare.3521261
title: Appendix C. Focal arthropod taxa included in this study: total number of individuals captured at invaded (n = 8) and uninvaded (n = 8) plots, and the proportion of invaded and uninvaded plots at which each taxon was detected.

description: Focal arthropod taxa included in this study: total number of individuals captured at invaded (n = 8) and uninvaded (n = 8) plots, and the proportion of invaded and uninvaded plots at which each taxon was detected.
DOI: 10.6084/m9.figshare.3521261.v1
title: Appendix C. Focal arthropod taxa included in this study: total number of individuals captured at invaded (n = 8) and uninvaded (n = 8) plots, and the proportion of invaded and uninvaded plots at which each taxon was detected.

description: Focal arthropod taxa included in this study: total number of individuals captured at invaded (n = 8) and uninvaded (n = 8) plots, and the proportion of invaded and uninvaded plots at which each taxon was detected.
DOI: 10.6084/m9.figshare.3521255
title: Appendix A. Additional methods and figures related to species distribution modeling approaches and sensitivity analyses.

description: Additional methods and figures related to species distribution modeling approaches and sensitivity analyses.
DOI: 10.6084/m9.figshare.3521255.v1
title: Appendix A. Additional methods and figures related to species distribution modeling approaches and sensitivity analyses.

description: Additional methods and figures related to species distribution modeling approaches and sensitivity analyses.
DOI: 10.6084/m9.figshare.3521252
title: Supplement 1. Name and climate sensitivity for each species used in winter (CBC) and summer (BBS) prioritizations.

description: File List Winter_species_list.csv (MD5: 7e4d2450460dcb882a3a68365e49da2c) Summer_species_list.csv (MD5: f1aec51befcc8d230dbfb149c7aa3fa3) Description Winter_species_list.csv contains the full species list used for winter (CBC) prioritizations. The file lists the common name and scientific name of each species following American Ornithologists’ Union (AOU) nomenclature. It also lists the climate sensitivity (climate threatened or climate endangered) as described in the Audubon Climate Report (http://climate.audubon.org). The linked report features visualizations of each species projected response to future climate change. Summer_species_list.csv contains the full species list used for summer (BBS) prioritizations. The file lists the common name and scientific name of each species following American Ornithologists’ Union (AOU) nomenclature. It also lists the climate sensitivity (climate threatened or climate endangered) as described in the Audubon Climate Report (http://climate.audubon.org). The linked report features visualizations of each species projected response to future climate change.
DOI: 10.6084/m9.figshare.3521252.v1
title: Supplement 1. Name and climate sensitivity for each species used in winter (CBC) and summer (BBS) prioritizations.

description: File List Winter_species_list.csv (MD5: 7e4d2450460dcb882a3a68365e49da2c) Summer_species_list.csv (MD5: f1aec51befcc8d230dbfb149c7aa3fa3) Description Winter_species_list.csv contains the full species list used for winter (CBC) prioritizations. The file lists the common name and scientific name of each species following American Ornithologists’ Union (AOU) nomenclature. It also lists the climate sensitivity (climate threatened or climate endangered) as described in the Audubon Climate Report (http://climate.audubon.org). The linked report features visualizations of each species projected response to future climate change. Summer_species_list.csv contains the full species list used for summer (BBS) prioritizations. The file lists the common name and scientific name of each species following American Ornithologists’ Union (AOU) nomenclature. It also lists the climate sensitivity (climate threatened or climate endangered) as described in the Audubon Climate Report (http://climate.audubon.org). The linked report features visualizations of each species projected response to future climate change.
DOI: 10.6084/m9.figshare.3521249
title: Appendix A. Detailed explanation of data subsetting and model fitting procedure for both model types.

description: Detailed explanation of data subsetting and model fitting procedure for both model types.
DOI: 10.6084/m9.figshare.3521243
title: Appendix A. Detailed results on population identification analyses and results on the effects of use of a smaller mesh size and use of a sorting box.

description: Detailed results on population identification analyses and results on the effects of use of a smaller mesh size and use of a sorting box.
DOI: 10.6084/m9.figshare.3521243.v1
title: Appendix A. Detailed results on population identification analyses and results on the effects of use of a smaller mesh size and use of a sorting box.

description: Detailed results on population identification analyses and results on the effects of use of a smaller mesh size and use of a sorting box.
DOI: 10.6084/m9.figshare.3521240
title: Supplement 1. Data for all 118 coho salmon included in the on-board confinement experiment, metadata (i.e., at-release information) on the 50 coho salmon released with transmitters, and data for additional fish that were biopsied.

description: File List physiologyRAMPinjury.csv (MD5: 42ed23a64f5dcbf75bab93c134548252) net_pen_mortality.csv (MD5: 8f5ca3516853958cfd97c1516bc44777) Description The first data file (“<b>Raby et al purse seine ms online data supplement – physiologyRAMPinjury</b>”) contains all the physiological data from the study, matched up with the fish vitality data. Variable descriptions: Capture = Whether the blood sample is from post-capture or after 24 h of net pen confinement. Spaghetti = The number of the spaghetti tag inserted into the fish, for those included in the net pen study. Cortisol = The plasma concentration of cortisol. Units for this and the other blood variables are provided in the paper. RAMP = RAMP score. Explanation provided in the paper. Orientation = Whether the orientation reflex was impaired (1 = yes). SamplingTime = The time, in seconds, between the fish being brought on board and when it was sampled, with the intervening time spent in a revival tote. FL (cm) = Fork length of the fish. InjuryScore = Injury score explanation provided in the paper. RAMP-Injury score = The combined condition score described in the paper. The second data file (“<b>Raby et al purse seine ms net pen mortality data supplement</b>”) whose data contains information on each of the fish that was included in the net pen confinement experiment. Date = The date the fish was removed from the net pen. OtherTag = Whether a V8-dummy transmitter (V8D) was attached to the spaghetti tag or the 24 h net pen study. Mortality = Whether this fish was counted as a mortality in the estimate and for statistics (i.e., includes moribund fish). Catch = The number of fish caught in the net set in which this fish was caught. SamplingTime = As above. Injury = Injury score, as above. RAMP = RAMP score. RAMPInjury = The combined condition score. FL (cm) = Fork length. Spag# = Spaghetti tag number. Phlebotomy = Whether this fish was blood sampled at capture time (1 = it was). Dummy = Whether a dummy tag was attached to this fish for the experiment. OR = Whether the orientation reflex was impaired at capture time.
DOI: 10.6084/m9.figshare.3521240.v1
title: Supplement 1. Data for all 118 coho salmon included in the on-board confinement experiment, metadata (i.e., at-release information) on the 50 coho salmon released with transmitters, and data for additional fish that were biopsied.

description: File List physiologyRAMPinjury.csv (MD5: 42ed23a64f5dcbf75bab93c134548252) net_pen_mortality.csv (MD5: 8f5ca3516853958cfd97c1516bc44777) Description The first data file (“<b>Raby et al purse seine ms online data supplement – physiologyRAMPinjury</b>”) contains all the physiological data from the study, matched up with the fish vitality data. Variable descriptions: Capture = Whether the blood sample is from post-capture or after 24 h of net pen confinement. Spaghetti = The number of the spaghetti tag inserted into the fish, for those included in the net pen study. Cortisol = The plasma concentration of cortisol. Units for this and the other blood variables are provided in the paper. RAMP = RAMP score. Explanation provided in the paper. Orientation = Whether the orientation reflex was impaired (1 = yes). SamplingTime = The time, in seconds, between the fish being brought on board and when it was sampled, with the intervening time spent in a revival tote. FL (cm) = Fork length of the fish. InjuryScore = Injury score explanation provided in the paper. RAMP-Injury score = The combined condition score described in the paper. The second data file (“<b>Raby et al purse seine ms net pen mortality data supplement</b>”) whose data contains information on each of the fish that was included in the net pen confinement experiment. Date = The date the fish was removed from the net pen. OtherTag = Whether a V8-dummy transmitter (V8D) was attached to the spaghetti tag or the 24 h net pen study. Mortality = Whether this fish was counted as a mortality in the estimate and for statistics (i.e., includes moribund fish). Catch = The number of fish caught in the net set in which this fish was caught. SamplingTime = As above. Injury = Injury score, as above. RAMP = RAMP score. RAMPInjury = The combined condition score. FL (cm) = Fork length. Spag# = Spaghetti tag number. Phlebotomy = Whether this fish was blood sampled at capture time (1 = it was). Dummy = Whether a dummy tag was attached to this fish for the experiment. OR = Whether the orientation reflex was impaired at capture time.
DOI: 10.6084/m9.figshare.3521237
title: Appendix A. Extended descriptions of the data sources, data processing, STEM modeling framework, and local occurrence and abundance models.

description: Extended descriptions of the data sources, data processing, STEM modeling framework, and local occurrence and abundance models.
DOI: 10.6084/m9.figshare.3521234
title: Appendix A. Importance Value Index (IVI) values.

description: Importance Value Index (IVI) values.
DOI: 10.6084/m9.figshare.3521234.v1
title: Appendix A. Importance Value Index (IVI) values.

description: Importance Value Index (IVI) values.
DOI: 10.6084/m9.figshare.3521231
title: Appendix A. Bioclimatic conditions across study plots.

description: Bioclimatic conditions across study plots.
DOI: 10.6084/m9.figshare.3521231.v1
title: Appendix A. Bioclimatic conditions across study plots.

description: Bioclimatic conditions across study plots.
DOI: 10.6084/m9.figshare.3521228
title: Appendix B. Ranking of candidate models for changes in functional composition with land use.

description: Ranking of candidate models for changes in functional composition with land use.
DOI: 10.6084/m9.figshare.3521228.v1
title: Appendix B. Ranking of candidate models for changes in functional composition with land use.

description: Ranking of candidate models for changes in functional composition with land use.
DOI: 10.6084/m9.figshare.3521225
title: Appendix C. Ranking of candidate models for changes in functional diversity with land use.

description: Ranking of candidate models for changes in functional diversity with land use.
DOI: 10.6084/m9.figshare.3521225.v1
title: Appendix C. Ranking of candidate models for changes in functional diversity with land use.

description: Ranking of candidate models for changes in functional diversity with land use.
DOI: 10.6084/m9.figshare.3521222
title: Appendix A. Estimating bioenergetic model parameters from synthesized literature data.

description: Estimating bioenergetic model parameters from synthesized literature data.
DOI: 10.6084/m9.figshare.3521219
title: Appendix B. Supplementary figures on the dynamics and predictions of the bioenergetic model.

description: Supplementary figures on the dynamics and predictions of the bioenergetic model.
DOI: 10.6084/m9.figshare.3521216
title: Appendix C. Literature summary of papers investigating global transcript expression in Daphnia.

description: Literature summary of papers investigating global transcript expression in Daphnia.