cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6zycf5
title: Occurrence Download

description: A dataset listing the 4932 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is ITA.16_1",
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset's 4932 records were derived from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003026-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28874354
title: Transcriptome assemblies of Hirudo nipponia

description: To elucidate the sequence characteristics, evolutionary origins, and genetic variations of antimicrobial peptides, we sequenced several transcriptomes and assembled them using Trinity.
DOI: 10.6084/m9.figshare.28874354.v1
title: Transcriptome assemblies of Hirudo nipponia

description: To elucidate the sequence characteristics, evolutionary origins, and genetic variations of antimicrobial peptides, we sequenced several transcriptomes and assembled them using Trinity.
DOI: 10.6084/m9.figshare.28853564
title: <b>Code and Partial Test Data</b>

description: 代码和测试数据
DOI: 10.3886/e227141
title: Work-Family Conflict and Burnout

description: 为了研究 COVID-19 大流行后工作与家庭冲突对飞行员职业倦怠的影响，采用了 Maslach 倦怠量表-一般调查和赵欣远工作-家庭冲突双向量表作为研究工具。
description: Smallest Geographic Unit: China
DOI: 10.3886/e227141v1-176441
title: Work-Family Conflict and Burnout

description: 为了研究 COVID-19 大流行后工作与家庭冲突对飞行员职业倦怠的影响，采用了 Maslach 倦怠量表-一般调查和赵欣远工作-家庭冲突双向量表作为研究工具。
description: Smallest Geographic Unit: China
DOI: 10.6084/m9.figshare.28643678
title: Replication package for "Measuring trade costs and analyzing the determinants of trade growth between Cambodia and major trading partners: 1993-2019"

description: <b>Background: </b>Like in many other least-developed countries (LDCs), high trade costs have long been a major barrier to Cambodia's trade integration. Despite their practical significance and increasing policy attention in the country, little is known about these costs.<b>Purpose: </b>This study aims to measure Cambodia's trade costs and explore the driving forces behind the growth of its bilateral trade.<b>Methodology:</b> A micro-founded measure of trade costs introduced by Novy (2013) is employed to quantify the bilateral trade costs between Cambodia and its top 30 trading partners from 1993 to 2019.<b>Originality/value: </b>This study contributes to the literature on Cambodia’s trade costs, which has received limited attention. This research work is the first to provide a comprehensive measure of trade costs, including a wide range of barriers, such as tariffs, transportation costs, border-related costs, infrastructure inefficiencies, and other factors impeding Cambodia's bilateral trade flows.<b>Key findings: </b>We find that Cambodia's average trade costs decreased by 35.43% between 1993 and 2019. Fluctuations in average trade costs persisted until 2014, despite Cambodia's accession to the World Trade Organization (WTO) in 2004. Since then, these costs have declined more rapidly. Cambodia's bilateral trade costs are lower with its major trading partners in Southeast Asia and East Asia than with those in South Asia, Oceania, Europe, and North America. Cambodia's average trade costs with developing and emerging economies are lower than those with developed economies. Between 2014 and 2019, Cambodia experienced a notable decline in average trade costs with trading partners along the Belt and Road Initiative (BRI) corridors by 34.78%, twice as fast as with non-BRI trading partners. Regarding the decomposition of trade growth, we find that the expansion of Cambodian trade from 1993 to 2019 was driven by three factors: the rise in income (59.65%), the decline in trade costs (56.69%), and the decline in multilateral resistance (-16.34%).<b>Research implications and recommendations: </b>The findings of this study have significant implications for a better understanding of Cambodia's development toward global trade integration over the past two decades. Our results suggest that Cambodia can optimize its trade expansion potential by focusing on its relations with trading partners exhibiting high economic growth potential and those achieving substantial reductions in trade costs.
DOI: 10.6084/m9.figshare.28874390
title: Supplementary Material for: Familial kidney disease phenocopying hypertensive nephropathy

description: Introduction
Familial kidney disease is common in Cyprus and previous studies have found that the majority of families have mutations in Alport syndrome genes COL4A3/4/5.
We have collected data from over 50 Turkish Cypriot families in whom kidney disease appears to follow an autosomal dominant (AD) pattern, and looked for pathological variants in these genes.
Methods 
Probands from 55 families underwent massive parallel DNA sequencing using a glomerular gene panel for familial hematuria, and whole exome sequencing (WES) was also performed in 22 of them. Clinical records were reviewed.
Results
Likely pathogenic variants were identified in 7 of the 55 families (COL4A3 (3), COL4A4 (2), and COL4A5 (2)), leaving 48 unsolved families. Among the latter a common missense variant of uncertain significance (COL4A4:p.G545A), was present in 5 families (9.1%). In contrast to families with a pathogenic variant in COL4A3/4 and a clear glomerular phenotype the 5 families (54 patients with clinical and genetic data), manifested near dominant susceptibility with incomplete penetrance, presenting with hypertension, variable and intermittent microscopic hematuria, and minimal proteinuria,&lt;1 g/day until the estimated glomerular filtration rate (eGFR) fell below 30 ml/min, after which it increased in some individuals. Of those over age 50, 20% had reached end-stage by median age of 66 (48-80) years.
Conclusions
We describe a kidney disease with mild hypertension that is more characteristic of a tubulointerstitial disease and phenocopies hypertensive nephropathy. While the variant COL4A4:p.G545A is not responsible for a Mendelian CKD phenotype, it appears to increases the susceptibility, acting as a hypomorphic variant contributing to Alport spectrum nephropathy. Early detection and treatment with ACE inhibitors should prolong kidney survival to an age where hemodialysis is avoided.
DOI: 10.15468/dl.uaptaa
title: Occurrence Download

description: A dataset containing 654766 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is niek_2022"
 ]
}

 The dataset includes 654766 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003031-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28874393
title: Supplementary Material for: Unexpected Twin Pregnancy in a BRCA2-Positive Breast Cancer Patient with Post-Chemotherapy Amenorrhea: A Case Report and Call for Comprehensive Contraceptive Counseling

description: Background: Contraceptive counseling for cancer patients, especially during periods of treatment-induced amenorrhea, is often overlooked. This can lead to unexpected pregnancies with significant implications for patient care and outcomes.

Case Presentation: We report a case of a 38-year-old BRCA2-positive breast cancer patient who experienced an unexpected twin pregnancy while undergoing treatment with tamoxifen and olaparib. The patient had been amenorrheic since initiating chemotherapy for more than 600 days and had not received contraceptive counseling. The pregnancy was discovered during routine follow-up imaging computed tomography. After thorough counseling regarding the teratogenic potential of her treatments and radiation exposure, and considering the patient's strong desire to prioritize her own treatment to safeguard her existing three children, the pregnancy was terminated.

Conclusion: This case highlights the need for comprehensive contraceptive counseling throughout cancer treatment, regardless of apparent fertility status. It also emphasizes the importance of considering both teratogenicity of treatments and patients' personal circumstances in managing unexpected pregnancies in cancer patients.

Keywords: Breast Neoplasms; BRCA2 Protein; Contraception; Amenorrhea; Pregnancy, Unplanned
DOI: 10.6084/m9.figshare.28874393.v1
title: Supplementary Material for: Unexpected Twin Pregnancy in a BRCA2-Positive Breast Cancer Patient with Post-Chemotherapy Amenorrhea: A Case Report and Call for Comprehensive Contraceptive Counseling

description: Background: Contraceptive counseling for cancer patients, especially during periods of treatment-induced amenorrhea, is often overlooked. This can lead to unexpected pregnancies with significant implications for patient care and outcomes.

Case Presentation: We report a case of a 38-year-old BRCA2-positive breast cancer patient who experienced an unexpected twin pregnancy while undergoing treatment with tamoxifen and olaparib. The patient had been amenorrheic since initiating chemotherapy for more than 600 days and had not received contraceptive counseling. The pregnancy was discovered during routine follow-up imaging computed tomography. After thorough counseling regarding the teratogenic potential of her treatments and radiation exposure, and considering the patient's strong desire to prioritize her own treatment to safeguard her existing three children, the pregnancy was terminated.

Conclusion: This case highlights the need for comprehensive contraceptive counseling throughout cancer treatment, regardless of apparent fertility status. It also emphasizes the importance of considering both teratogenicity of treatments and patients' personal circumstances in managing unexpected pregnancies in cancer patients.

Keywords: Breast Neoplasms; BRCA2 Protein; Contraception; Amenorrhea; Pregnancy, Unplanned
DOI: 10.15468/dl.b3n8nk
title: Occurrence Download

description: A dataset containing 655929 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Vlinderdatabank - Butterflies in Flanders and the Brussels Capital Region, Belgium"
 ]
}

 The dataset includes 655929 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003030-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15286326
title: IMS-Data
DOI: 10.5281/zenodo.15286325
title: IMS5-Data
DOI: 10.5281/zenodo.15286372
title: IMS5-Data
DOI: 10.15468/dl.c4e36b
title: Occurrence Download

description: A dataset containing 661606 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Triplehorn Insect Collection, The Ohio State University"
 ]
}

 The dataset includes 661606 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003032-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28874378
title: Summary raw EWAS (Ginevičienė et al. 2025. Exp Physiol.)_xlsx.zip

description: Title: A multi-omics investigation of sarcopenia and frailty: integrating genomic, epigenomic, and telomere length dataJournal: Experimental PhysiologyAuthors: Valentina Ginevičienė, Erinija Pranckevičienė, Alina Urnikytė, Laura Jurkūnaitė, Kristijona Gutauskaitė, Rūta Dadelienė, Justina Kilaitė, Ieva Eglė Jamontaitė, Asta Mastavičiūtė, Ildus I. Ahmetov, Vidmantas AleknaThis dataset represent raw methylation data supporting findings reported in the study "A multi-omics investigation of sarcopenia and frailty: integrating genomic, epigenomic, and telomere length data". The compressed file contains Excel workbook with the information sheet, sample sheet and matrix of beta values. The sample sheet contains IDAT identifiers and gender and age information together with the continuous Lean_mass_index phenotypic variable. The matrix of raw beta values has Illumina EPIC V2 probes as rows and the IDAT identifiers as columns. Both, the sample sheet and the matrix of raw beta values have been preprocessed where low quality probes and samples were removed. This raw dataset was used to infer associations between methylation status and lean mass index in the study. <br>
DOI: 10.5281/zenodo.15161978
title: 2D_ElastoPlastoDynamics: 2D dynamic non-linear structural mechanics dataset, with a non-linear non-local constitutive law

description: This dataset contains 2D dynamic non-linear structural mechanics with a non-linear non-local constitutive law.

 

The files format is PLAID, see the plaid documentation.

 

The variablity in the samples is the geometry (mesh). Outputs of interest are 3 transient fields: x and y components of the displacement at the nodes and the erosion status at the elements.

 



The dataset has a training set of size 1000 and a testing set of size 18. Outputs are not provided on the testing sets. 

 

Tips to access the data:

After decompressing the downloaded file:

from plaid.containers.dataset import Datasetfrom plaid.problem_definition import ProblemDefinition

dataset = Dataset()problem = ProblemDefinition()

problem._load_from_dir_(os.path.join(/path/to/data,'problem_definition'))dataset._load_from_dir_(os.path.join(/path/to/data,'dataset'), verbose = True)

print("problem =", problem)print("dataset =", dataset)



ids_train = problem.get_split('train')

ids_test  = problem.get_split('test')


sample_train_0 = dataset[ids_train[0]]

sample_test_0 = dataset[ids_test[0]]


print(sample_train_0)

print(sample_test_0)


sample = sample_train_0


# inputs

mesh = sample.get_mesh()

mesh = sample.get_mesh(time=0.01, apply_links=True, in_memory=True)# links to mesh at time=0 since mesh is constant

print(mesh)


# outputs

for fn in ["U_x", "U_y"]:

    field = sample.get_field(fn, time=0.01)

    print(field)


field = sample.get_field("EROSION_STATUS", location="CellCenter", time=0.01)

print(field)
DOI: 10.5281/zenodo.15161979
title: 2D_ElastoPlastoDynamics: 2D dynamic non-linear structural mechanics dataset, with a non-linear non-local constitutive law

description: This dataset contains 2D dynamic non-linear structural mechanics with a non-linear non-local constitutive law.

 

The files format is PLAID, see the plaid documentation.

 

The variablity in the samples is the geometry (mesh). Outputs of interest are 3 transient fields: x and y components of the displacement at the nodes and the erosion status at the elements.

 



The dataset has a training set of size 1000 and a testing set of size 18. Outputs are not provided on the testing sets. 

 

Tips to access the data:

After decompressing the downloaded file:

from plaid.containers.dataset import Datasetfrom plaid.problem_definition import ProblemDefinition

dataset = Dataset()problem = ProblemDefinition()

problem._load_from_dir_(os.path.join(/path/to/data,'problem_definition'))dataset._load_from_dir_(os.path.join(/path/to/data,'dataset'), verbose = True)

print("problem =", problem)print("dataset =", dataset)



ids_train = problem.get_split('train')

ids_test  = problem.get_split('test')


sample_train_0 = dataset[ids_train[0]]

sample_test_0 = dataset[ids_test[0]]


print(sample_train_0)

print(sample_test_0)


sample = sample_train_0


# inputs

mesh = sample.get_mesh()

mesh = sample.get_mesh(time=0.01, apply_links=True, in_memory=True)# links to mesh at time=0 since mesh is constant

print(mesh)


# outputs

for fn in ["U_x", "U_y"]:

    field = sample.get_field(fn, time=0.01)

    print(field)


field = sample.get_field("EROSION_STATUS", location="CellCenter", time=0.01)

print(field)
DOI: 10.5281/zenodo.15163352
title: 2D_ElastoPlastoDynamics: 2D dynamic non-linear structural mechanics dataset, with a non-linear non-local constitutive law

description: This dataset contains 2D dynamic non-linear structural mechanics with a non-linear non-local constitutive law.

 

The files format is PLAID, see the plaid documentation.

 

The variablity in the samples is the geometry (mesh). Outputs of interest are 3 transient fields: x and y components of the displacement at the nodes and the erosion status at the elements.

 



The dataset has a training set of size 1000 and a testing set of size 18. Outputs are not provided on the testing sets. 

 

Tips to access the data:

After decompressing the downloaded file:

from plaid.containers.dataset import Datasetfrom plaid.problem_definition import ProblemDefinition

dataset = Dataset()problem = ProblemDefinition()

problem._load_from_dir_(os.path.join(/path/to/data,'problem_definition'))dataset._load_from_dir_(os.path.join(/path/to/data,'dataset'), verbose = True)

print("problem =", problem)print("dataset =", dataset)



ids_train = problem.get_split('train')

ids_test  = problem.get_split('test')


sample_train_0 = dataset[ids_train[0]]

sample_test_0 = dataset[ids_test[0]]


print(sample_train_0)

print(sample_test_0)


sample = sample_train_0


# inputs

mesh = sample.get_mesh()

mesh = sample.get_mesh(time=0.01, apply_links=True, in_memory=True)# links to mesh at time=0 since mesh is constant

print(mesh)


# outputs

for fn in ["U_x", "U_y"]:

    field = sample.get_field(fn, time=0.01)

    print(field)


field = sample.get_field("EROSION_STATUS", location="CellCenter", time=0.01)

print(field)
DOI: 10.5281/zenodo.15286369
title: 2D_ElastoPlastoDynamics: 2D dynamic non-linear structural mechanics dataset, with a non-linear non-local constitutive law

description: This dataset contains 2D dynamic non-linear structural mechanics with a non-linear non-local constitutive law.

 

The files format is PLAID, see the plaid documentation.

 

The variablity in the samples is the geometry (mesh). Outputs of interest are 3 transient fields: x and y components of the displacement at the nodes and the erosion status at the elements.

 



The dataset has a training set of size 1000 and a testing set of size 18. Outputs are not provided on the testing sets. 

 

Tips to access the data:

After decompressing the downloaded file:

from plaid.containers.dataset import Datasetfrom plaid.problem_definition import ProblemDefinition

dataset = Dataset()problem = ProblemDefinition()

problem._load_from_dir_(os.path.join(/path/to/data,'problem_definition'))dataset._load_from_dir_(os.path.join(/path/to/data,'dataset'), verbose = True)

print("problem =", problem)print("dataset =", dataset)



ids_train = problem.get_split('train')

ids_test  = problem.get_split('test')


sample_train_0 = dataset[ids_train[0]]

sample_test_0 = dataset[ids_test[0]]


print(sample_train_0)

print(sample_test_0)


sample = sample_train_0


# inputs

mesh = sample.get_mesh()

mesh = sample.get_mesh(time=0.01, apply_links=True, in_memory=True)# links to mesh at time=0 since mesh is constant

print(mesh)


# outputs

for fn in ["U_x", "U_y"]:

    field = sample.get_field(fn, time=0.01)

    print(field)


field = sample.get_field("EROSION_STATUS", location="CellCenter", time=0.01)

print(field)
DOI: 10.5281/zenodo.15286377
title: Exact Mapping Between Ramanujan Graph Spectrum and Standard Model Couplings in GEUT

description: We establish an exact analytical relationship between the spectral properties of d = 6 Ramanujan graphsand the gauge coupling constants of the Standard Model within Geometric Emergent Unity Theory (GEUT). The derivation shows:

(1) αs(mZ ) = γ/3 with γ = (2√6)−1,

(2) electroweak mixing angle 

sin2 θW = 1/6 + O(κ 2), and

(3) fermion mass hierarchies through modular forms of Aut(G).

All predictions matchexperimental values within 1σ.
DOI: 10.5281/zenodo.15286378
title: Exact Mapping Between Ramanujan Graph Spectrum and Standard Model Couplings in GEUT

description: We establish an exact analytical relationship between the spectral properties of d = 6 Ramanujan graphsand the gauge coupling constants of the Standard Model within Geometric Emergent Unity Theory (GEUT). The derivation shows:

(1) αs(mZ ) = γ/3 with γ = (2√6)−1,

(2) electroweak mixing angle 

sin2 θW = 1/6 + O(κ 2), and

(3) fermion mass hierarchies through modular forms of Aut(G).

All predictions matchexperimental values within 1σ.
DOI: 10.5281/zenodo.15286353
title: Table S1. The list of the excluded studies after complete reading phase
DOI: 10.5281/zenodo.15286354
title: Table S1. The list of the excluded studies after complete reading phase
DOI: 10.15468/dl.ycnq7q
title: Occurrence Download

description: A dataset containing 467108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Occurrence evidence)",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 1980-2000"
 ]
}

 The dataset includes 467108 records from 385 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003029-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u74bpv
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Côte d’Ivoire",
 "TaxonKey is Uncaria africana G.Don"
 ]
}

 The dataset includes 54 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003039-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjj4zs
title: Occurrence Download

description: A dataset containing 652169 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is New York City Street Tree Census - 2015"
 ]
}

 The dataset includes 652169 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003035-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15286394
title: Quantum Field Theory on Ramanujan Graphs: A Complete Formulation in GEUT

description: We present a rigorous construction of quantum field theory on d = 6 Ramanujan graphs within theGeometric Emergent Unity Theory (GEUT) framework. The theory yields finite quantum fields through: (1)discrete Laplacian propagators, (2) exact gauge invariance from graph holonomy, and (3) emergent continuum limits. All Standard Model interactions are derived from the graph spectrum

λn ∈ [6 − 2√5, 6 + 2√5]

with no external regularization required.
DOI: 10.5281/zenodo.15286395
title: Quantum Field Theory on Ramanujan Graphs: A Complete Formulation in GEUT

description: We present a rigorous construction of quantum field theory on d = 6 Ramanujan graphs within theGeometric Emergent Unity Theory (GEUT) framework. The theory yields finite quantum fields through: (1)discrete Laplacian propagators, (2) exact gauge invariance from graph holonomy, and (3) emergent continuum limits. All Standard Model interactions are derived from the graph spectrum

λn ∈ [6 − 2√5, 6 + 2√5]

with no external regularization required.
DOI: 10.15468/dl.xwce83
title: Occurrence Download

description: A dataset containing 650449 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is LACM Entomology Collection"
 ]
}

 The dataset includes 650449 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003036-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bn9q3b
title: Occurrence Download

description: A dataset listing the 21905 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Nigeria",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 21905 records were derived from 445 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003034-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.