cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qm5u6u
title: Occurrence Download

description: A dataset containing 641428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((35.924964333333335 48.58410666666667, 35.924964333333335 65.67073733333334, 1.8796086666666671 65.67073733333334, 1.8796086666666671 48.58410666666667, 35.924964333333335 48.58410666666667))",
 "EventDate is 2013-11-01,2013-11-30"
 ]
}

 The dataset includes 641428 records from 350 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062833-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vma4bw
title: Occurrence Download

description: A dataset containing 1140155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "Geometry POLYGON((-86.660156 22.532853,-90.329589 22.593726,-91.669921 21.555284,-92.109374 19.580493,-90.197753 18.791917,-87.714843 18.020527,-85.957031 18.729501,-85.649414 20.097206,-85.495605 21.248422,-86.660156 22.532853))"
 ]
}

 The dataset includes 1140155 records from 579 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090140-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fns19j
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-51.61377 -31.80289,-49.10889 -31.61597,-45.7251 -24.00633,-52.75635 -21.94305,-57.01904 -24.32708,-57.72217 -28.96009,-51.61377 -31.80289))",
 "HasCoordinate is true",
 "TaxonKey is Sphaeropteris gardneri (Hook.) R.M.Tryon",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 17 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009236-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f7x6ru
title: Occurrence Download

description: A dataset containing 4703 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Australian National Insect Collection Image Library"
 ]
}

 The dataset includes 4703 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003075-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kagyfr
title: Occurrence Download

description: A dataset containing 31184 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-89.588012 21.291933,-89.593505 21.235622,-89.612731 21.140868,-89.618225 21.063997,-89.615478 20.987085,-89.607238 20.910134,-89.579772 20.853678,-89.530334 20.789498,-89.472656 20.753545,-89.384765 20.750977,-89.255676 20.766386,-89.162292 20.789498,-89.071655 20.866511,-89.005737 20.948614,-88.970031 21.015291,-88.917846 21.097313,-88.887634 21.143430,-88.851928 21.186972,-88.805236 21.217700,-88.747558 21.281696,-88.711853 21.337990,-88.678894 21.427503,-88.662414 21.476073,-88.698120 21.445399,-88.742065 21.424946,-88.780517 21.424946,-88.807983 21.409605,-88.862915 21.396819,-88.926086 21.381474,-89.016723 21.371244,-89.060668 21.363570,-89.115600 21.350781,-89.167785 21.350781,-89.244689 21.345664,-89.329833 21.335431,-89.420471 21.327756,-89.508361 21.312404,-89.588012 21.291933))"
 ]
}

 The dataset includes 31184 records from 200 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090143-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3e7k2z
title: Occurrence Download

description: A dataset containing 494 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Haworthia cooperi Baker"
 ]
}

 The dataset includes 494 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014188-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r0zkbn
title: Occurrence Download

description: A dataset containing 375 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dianthus glacialis Haenke"
 ]
}

 The dataset includes 375 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030109-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yhnjh
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Megalostylus tomentosus Champion, 1911"
 ]
}

 The dataset includes 19 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007885-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bpcfj4
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phoenix rupicola T.Anderson)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 29 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038322-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7wdud7
title: Occurrence Download

description: A dataset containing 353 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anopheles pseudopunctipennis Theobald, 1901"
 ]
}

 The dataset includes 353 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030114-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azk2u3
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Japan",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Libellula angelina Selys, 1883"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068383-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4egzkd
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Deyeuxia velutina var. nardifolia (Griseb.) Rúgolo"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063708-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hav5d3
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phyllodoce bulbosa Wesenberg-Lund, 1962",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068368-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kpqxfs
title: Occurrence Download

description: A dataset containing 422 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prosopis alba Griseb."
 ]
}

 The dataset includes 422 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030117-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xg3raf
title: Occurrence Download

description: A dataset containing 212995 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "GadmGid is BRA.12_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 212995 records from 239 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003918-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cjp67v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polygenis adelus (Jordan & Rothschild, 1923)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010353-231120084113126/datasets/export for details.
DOI: 10.15468/dl.ymh5tu
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Campanula reuteriana Boiss. & Balansa"
 ]
}

 The dataset includes 53 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068379-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nweuhn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polygenis pradoi (Wagner, 1937)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010331-231120084113126/datasets/export for details.
DOI: 10.15468/dl.cbz6rd
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prosopis alba Griseb.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 193 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030120-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uy98k3
title: Occurrence Download

description: A dataset containing 2554974 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Indonesia"
 ]
}

 The dataset includes 2554974 records from 1204 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024530-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.njunzf
title: Occurrence Download

description: A dataset containing 438 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phyllodoce laminosa Savigny, 1818",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 438 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068387-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5x7vnu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paramecops granulatus Morimoto, 1982",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226400-220831081235567/datasets/export for details.
DOI: 10.15468/dl.a84kvj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gerbillus acticola Thomas, 1918)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061986-230224095556074/datasets/export for details.
DOI: 10.15468/dl.n3bmuv
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((127.85277 -44.25579,164.14723 -44.25579,164.14723 -29.74421,127.85277 -29.74421,127.85277 -44.25579))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Diuris fragrantissima D.L.Jones & M.A.Clem."
 ]
}

 The dataset includes 40 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190164-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7wgxu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Glandirana susurra (Sekiya, Miura & Ogata, 2012))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062040-230224095556074/datasets/export for details.
DOI: 10.15468/dl.y6d4v3
title: Occurrence Download

description: A dataset containing 4944846 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4944846 records from 2275 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0361669-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60656/de1b44bda80d429d
title: Custom collection of categorize data from Bucharest, Cabauw, Chilbolton, Galați, Granada, and 13 other sites between 1 Jan and 31 Dec 2022
DOI: 10.5281/zenodo.13646267
title: RNA G4 folding MD simulations

description: HILLS - raw bias files, not averaged

reactive_trajs - full reactive trajectories

reactive_traj_stride100 - reactive trajectories strode by 100 for a fast visualization

 reference_replicas - full reference replica ensembles

 input_files - input, run, and visualization files, see this GitHub repo for details

 videos  - higher resolution videos than those found in this GitHub repo.
DOI: 10.17632/5dk5w77kdj
title: Carbon dynamics of grasslands on the Tibetan Plateau simulated by Biome-BGCMuSo

description: This dataset is grounded in the hypothesis that carbon dynamics in terrestrial ecosystems are differentially influenced by individual and combined environmental drivers, including climate change, CO₂ fertilization, precipitation variability, temperature shifts, and anthropogenic activities (e.g., grazing). By simulating eight distinct scenarios, the study aims to quantify the relative contributions of isolated drivers (e.g., CO₂, temperature) versus synergistic effects (e.g., CO₂ + climate change) on carbon pools and fluxes. 

Simulation Framework
• Model: Biome-BGCMuSo v6.1, a process-based model integrating vegetation dynamics, soil biogeochemistry, and grazing.
• Scenarios: Eight scenarios were simulated under identical initial conditions:
i. Control: Baseline conditions (no perturbations).
ii. Clim: Climate change (temperature + precipitation changes).
iii. CO2: Elevated atmospheric CO₂ concentration.
iv. CO2Clim: Combined CO₂ and climate change.
v. Grazing: Changed grazing intensity.
vi. Overall: Integration of all drivers (CO₂, climate, grazing).
vii. Prec: Changed Precipitation.
viii. Temp: Changed Temperature.
ix. NO_Grazing: No grazing.

• Variables: Each scenario outputs seven carbon-related variables:
o Biomass: Above- and belowground live plant biomass (g C m⁻²).
o LTRC: Litter carbon pool (g C m⁻²).
o NPP: Net Primary Productivity (g C m⁻² yr⁻¹).
o SOC: Soil organic carbon above 1 m soil depth (g C m⁻²).
o TOTC: Total ecosystem carbon (sum of vegetation, litter, and soil) (g C m⁻²).
o TOTSOC: Total soil carbon (including multiple soil layers if applicable) (g C m⁻²).
o VEGC: Vegetation carbon (woody and non-woody components) (g C m⁻²).

Model-related grazing data: 
Name Description Units
LargeLivestock_Inventory Large animal stock (cattle, horses, etc.) absolute number of animals per pixel 
LargeLivestock_Slaughter Large animal slaughter volumes absolute number of animals per pixel
SheepGoat_Inventory Sheep & goat combined stock absolute number of animals per pixel
SheepGoat_Slaughter Sheep & goat combined slaughter volumes absolute number of animals per pixel
StockDensity_Winter Winter pasture stocking density head/km² (sheep-equivalent units) 
StockDensity_Summer Summer pasture stocking density head/km² (sheep-equivalent units) 

Seasonal pasture distribution
Four composite classes:
• Winter-Steppe • Winter-Meadow
• Summer-Steppe • Summer-Meadow

Temporal and Spatial Scope
• Time Period: Simulations span 1979–2018 with annual resolution.
• Geographic Coverage: Grasslands in the Tibetan Plateau.
DOI: 10.17632/5dk5w77kdj.1
title: Carbon dynamics of grasslands on the Tibetan Plateau simulated by Biome-BGCMuSo

description: This dataset is grounded in the hypothesis that carbon dynamics in terrestrial ecosystems are differentially influenced by individual and combined environmental drivers, including climate change, CO₂ fertilization, precipitation variability, temperature shifts, and anthropogenic activities (e.g., grazing). By simulating eight distinct scenarios, the study aims to quantify the relative contributions of isolated drivers (e.g., CO₂, temperature) versus synergistic effects (e.g., CO₂ + climate change) on carbon pools and fluxes. 

Simulation Framework
• Model: Biome-BGCMuSo v6.1, a process-based model integrating vegetation dynamics, soil biogeochemistry, and grazing.
• Scenarios: Eight scenarios were simulated under identical initial conditions:
i. Control: Baseline conditions (no perturbations).
ii. Clim: Climate change (temperature + precipitation changes).
iii. CO2: Elevated atmospheric CO₂ concentration.
iv. CO2Clim: Combined CO₂ and climate change.
v. Grazing: Changed grazing intensity.
vi. Overall: Integration of all drivers (CO₂, climate, grazing).
vii. Prec: Changed Precipitation.
viii. Temp: Changed Temperature.
ix. NO_Grazing: No grazing.

• Variables: Each scenario outputs seven carbon-related variables:
o Biomass: Above- and belowground live plant biomass (g C m⁻²).
o LTRC: Litter carbon pool (g C m⁻²).
o NPP: Net Primary Productivity (g C m⁻² yr⁻¹).
o SOC: Soil organic carbon above 1 m soil depth (g C m⁻²).
o TOTC: Total ecosystem carbon (sum of vegetation, litter, and soil) (g C m⁻²).
o TOTSOC: Total soil carbon (including multiple soil layers if applicable) (g C m⁻²).
o VEGC: Vegetation carbon (woody and non-woody components) (g C m⁻²).

Model-related grazing data: 
Name Description Units
LargeLivestock_Inventory Large animal stock (cattle, horses, etc.) absolute number of animals per pixel 
LargeLivestock_Slaughter Large animal slaughter volumes absolute number of animals per pixel
SheepGoat_Inventory Sheep & goat combined stock absolute number of animals per pixel
SheepGoat_Slaughter Sheep & goat combined slaughter volumes absolute number of animals per pixel
StockDensity_Winter Winter pasture stocking density head/km² (sheep-equivalent units) 
StockDensity_Summer Summer pasture stocking density head/km² (sheep-equivalent units) 

Seasonal pasture distribution
Four composite classes:
• Winter-Steppe • Winter-Meadow
• Summer-Steppe • Summer-Meadow

Temporal and Spatial Scope
• Time Period: Simulations span 1979–2018 with annual resolution.
• Geographic Coverage: Grasslands in the Tibetan Plateau.
DOI: 10.17632/h5pr524966.1
title: Pelangi Game Research Result

description: The results of the research for Pelangi educational board game development, which includes an initial survey, black box testing result, and evaluation survey.
DOI: 10.17632/h5pr524966
title: Pelangi Game Research Result

description: The results of the research for Pelangi educational board game development, which includes an initial survey, black box testing result, evaluation survey, and the game's code via GitHub.
DOI: 10.17632/h5pr524966.2
title: Pelangi Game Research Result

description: The results of the research for Pelangi educational board game development, which includes an initial survey, black box testing result, evaluation survey, and the game's code via GitHub.
DOI: 10.17632/9cw2rwccnv.1
title: RegIIIβ fortifies Salmonella Typhimurium invasion of the gut in the early-stage gastrointestinal infection by enhancing flagella-driven locomotion

description: The bactericidal lectin RegIIIβ is produced by epithelial cells and secreted into the intestinal lumen, where it acts as an innate immune effector by killing the microbiota and enteropathogens. However, it remains to be determined whether RegIIIβ plays roles beyond its bactericidal effects. The present study revealed that RegIIIβ binds to the enteropathogen Salmonella enterica serovar Typhimurium in the gut, thereby increasing the locomotion speed of this bacterium through maintenance of the membrane potential. This led to enhanced invasion by S. Typhimurium into epithelial cells. Finally, RegIIIβ facilitated the gut colonization levels of S. Typhimurium and enteropathy in the early stages of gastrointestinal infection. Our findings provide novel insight into the roles of RegIIIβ in gastrointestinal infection caused by enteropathogens.