cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/128253
title: INS (Inertial Navigation System) data collected during research cruise RR1714 using a Kongsberg Seapath 320+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128240
title: Meteorological Station data collected during research cruise RR1714 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128243
title: Multibeam Echosounder data collected during research cruise RR1714 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7312199
title: Differential equation model of carbon dioxide emission using functional linear regression

description: Carbon dioxide is one of the major contributors to Global Warming. In the present study, we develop a differential equation to model the carbon dioxide emission data in the atmosphere using functional linear regression approach. In the proposed method, a differential operator is defined as data smoother and we use the penalized least square fitting criteria to smooth the data. The profile error sum of squares is optimized to estimate the differential operators using functional regression. The solution of the developed differential equation estimates and predicts the rate of change of carbon dioxide in the atmosphere at a particular time. We apply the proposed model to fit the emission of carbon dioxide data in the continental United States. Numerical simulations of a number of test cases depict a satisfactory agreement with real data.
DOI: 10.7284/128247
title: Winch data collected during research cruise RR1714 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7312196
title: Case-based research on democratization

description: Empirical research on democratization is dominated by case studies and small-N comparisons. This article is a first attempt to take stock of qualitative case-based research on democratization. It finds that most articles use methods implicitly rather than explicitly and are disconnected from the burgeoning literature on case-based methodology. This makes it difficult to summarize the substantive findings or to evaluate the contributions of the various approaches to our knowledge of democratic transition and consolidation. There is much to gain from a closer collaboration between methods experts and empirical researchers of democratization.
DOI: 10.7284/128251
title: Winch data collected during research cruise RR1714 using a Markey DUSH-5 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128256
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1715 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7312157
title: Determination of individual stability constants of coexisting molecular complexes formed by unresolvable isomers

description: Some biogenic substances undergo steric isomerism or tautomerism in which the isomers are unresolvable. Naturally, the isomers are expected to form molecular complexes with distinct stabilities. This paper proposes the method of determining individually the stability constants of complexes formed under isomerisation and complexation equilibria: the NMR titration curves are modelled and formulated for fast and slow isomeric equilibria, the process of least-squares fittings is explained, and the application to supramolecular complexation of unresolvable isomers is discussed as compared with NMR titration data reported for α- and β-D-glucosamine anomers.
DOI: 10.6084/m9.figshare.7312157.v1
title: Determination of individual stability constants of coexisting molecular complexes formed by unresolvable isomers

description: Some biogenic substances undergo steric isomerism or tautomerism in which the isomers are unresolvable. Naturally, the isomers are expected to form molecular complexes with distinct stabilities. This paper proposes the method of determining individually the stability constants of complexes formed under isomerisation and complexation equilibria: the NMR titration curves are modelled and formulated for fast and slow isomeric equilibria, the process of least-squares fittings is explained, and the application to supramolecular complexation of unresolvable isomers is discussed as compared with NMR titration data reported for α- and β-D-glucosamine anomers.
DOI: 10.7284/128268
title: Expendable Probe data collected during research cruise RR1715 using a Turo Quoll instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7312067
title: processed mutational profiles

description: Collated and pre-processed profiles of insertions and deletions resulting from Cas9 mutations as collected for 2018 Nature Biotechnology paper Allen et al, "Predicting the mutations generated by repair of Cas9-induced double-strand breaks".<br>The high level directories are samples.The individual files are in the format:<br>@@@ oligo_id_1 indel1 read_count example_readindel2 read_count example_read<br>...@@@ oligo_id_2 <br>...<br>These files were generated by running the included collate_indels.py file on data pre-processed using code at github repository (https://github.com/felicityallen/selftarget) and code ocean module (https://codeocean.com/capsule/6bc7bcae-d736-475b-bae5-00ca0562d401)<br><br>
DOI: 10.7284/128257
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1715 using a Furuno GP-150 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128259
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1715 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7312067.v1
title: processed mutational profiles

description: Collated and pre-processed profiles of insertions and deletions resulting from Cas9 mutations as collected for 2018 Nature Biotechnology paper Allen et al, "Predicting the mutations generated by repair of Cas9-induced double-strand breaks".<br>The high level directories are samples.The individual files are in the format:<br>@@@ oligo_id_1 indel1 read_count example_readindel2 read_count example_read<br>...@@@ oligo_id_2 <br>...<br>These files were generated by running the included collate_indels.py file on data pre-processed using code at github repository (https://github.com/felicityallen/selftarget) and code ocean module (https://codeocean.com/capsule/6bc7bcae-d736-475b-bae5-00ca0562d401)<br><br>
DOI: 10.6084/m9.figshare.7311899
title: FF2018

description: Spreadsheet of football stuff
DOI: 10.7284/128266
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1715 using a Trimble SPS351 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7311899.v1
title: FF2018

description: Spreadsheet of football stuff
DOI: 10.7284/128260
title: Gravimeter data collected during research cruise RR1715 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128264
title: HDSS (Hydrographic Doppler Sonar System) data collected during research cruise RR1715 using a SIO HDSS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128263
title: INS (Inertial Navigation System) data collected during research cruise RR1715 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128267
title: INS (Inertial Navigation System) data collected during research cruise RR1715 using a Kongsberg Seapath 320+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7310564
title: deidentified mini-microbiome data set

description: Bacterial genus read counts at baseline and 5 days, by child, sample, and aliquot. See associated paper for details.<br>
DOI: 10.6084/m9.figshare.7310564.v1
title: deidentified mini-microbiome data set

description: Bacterial genus read counts at baseline and 5 days, by child, sample, and aliquot. See associated paper for details.<br>
DOI: 10.7284/128255
title: Meteorological Station data collected during research cruise RR1715 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128258
title: Multibeam Echosounder data collected during research cruise RR1715 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128409
title: Multibeam Echosounder data collected during research cruise RR1715 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128262
title: Winch data collected during research cruise RR1715 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7309625
title: Data required to analyze effects of cross-mappability in trans-eQTL and co-expression studies

description: This dataset contains required files to reproduce results in the cross-mappability manuscript. [Note: data from GTEx and DGN still need to be downloaded separately.]
DOI: 10.6084/m9.figshare.7309625.v2
title: Data required to analyze effects of cross-mappability in trans-eQTL and co-expression studies

description: This dataset contains required files to reproduce results in the cross-mappability manuscript. [Note: data from GTEx and DGN still need to be downloaded separately.]
DOI: 10.7284/128265
title: Winch data collected during research cruise RR1715 using a Markey DUSH-5 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7309214
title: Data for: Temporal lobe epilepsy: hippocampal pathology modulates connectome topology and controllability

description: Phenotypic information and mean connectome feature data for:<br>Bernhardt BC, Fadaie F, Liu M, Gu S, Jefferies E, Smallwood J, Gu S, Bassett D, Bernasconi A, Bernasconi N (2019) Hippocampal pathology modulates white matter connectome topology and controllability in temporal lobe epilepsy. Neurology, 92(19):e2209-e2220. doi: 10.1212/WNL.0000000000007447. <br><br>
DOI: 10.7284/128270
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1716 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7309199
title: Supporting information

description: Minimal Data Set - PONE-D-18-11610R1- Subclinical parameters of arterial stiffness and arteriosclerosis correlate with QRISK3 in systemic lupus erythematosus.
DOI: 10.7284/128283
title: Expendable Probe data collected during research cruise RR1716 using a Turo Quoll instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7309199.v1
title: Supporting information

description: Minimal Data Set - PONE-D-18-11610R1- Subclinical parameters of arterial stiffness and arteriosclerosis correlate with QRISK3 in systemic lupus erythematosus.
DOI: 10.7284/128271
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1716 using a Furuno GP-150 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128273
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1716 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7309163
title: Wellcome Review of PhD Training in Biomedical Research

description: In 2017, Wellcome undertook a review of biomedical research PhD training to develop an evidence base on which to frame future funding decisions. The review included analysis of the literature, UK-wide and in-house datasets, and a community consultation involving both interviews and an online survey.<br>Version 2: 08/11/2018 Correction of author names
DOI: 10.7284/128281
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1716 using a Trimble SPS351 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128274
title: Gravimeter data collected during research cruise RR1716 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7309163.v1
title: Wellcome Review of PhD Training in Biomedical Research

description: In 2017, Wellcome undertook a review of biomedical research PhD training to develop an evidence base on which to frame future funding decisions. The review included analysis of the literature, UK-wide and in-house datasets, and a community consultation involving both interviews and an online survey.<br>
DOI: 10.7284/128278
title: HDSS (Hydrographic Doppler Sonar System) data collected during research cruise RR1716 using a SIO HDSS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128277
title: INS (Inertial Navigation System) data collected during research cruise RR1716 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128282
title: INS (Inertial Navigation System) data collected during research cruise RR1716 using a Kongsberg Seapath 320+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128269
title: Meteorological Station data collected during research cruise RR1716 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128272
title: Multibeam Echosounder data collected during research cruise RR1716 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128284
title: Singlebeam Echosounder data collected during research cruise RR1716 using a Knudsen 3260 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128276
title: Winch data collected during research cruise RR1716 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128280
title: Winch data collected during research cruise RR1716 using a Markey DUSH-5 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128286
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1717 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128287
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1717 using a Furuno GP-150 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128288
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1717 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128294
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1717 using a Trimble SPS351 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128289
title: Gravimeter data collected during research cruise RR1717 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128292
title: INS (Inertial Navigation System) data collected during research cruise RR1717 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128295
title: INS (Inertial Navigation System) data collected during research cruise RR1717 using a Kongsberg Seapath 320+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128285
title: Meteorological Station data collected during research cruise RR1717 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7309022
title: Supplementary raw data for "Probing N-glycoprotein microheterogeneity by lectin affinity purification-mass spectrometry analysis"

description: ZIP archive containing raw mass spectrometry data
DOI: 10.7284/128291
title: Winch data collected during research cruise RR1717 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7309022.v1
title: Supplementary raw data for "Probing N-glycoprotein microheterogeneity by lectin affinity purification-mass spectrometry analysis"

description: ZIP archive containing raw mass spectrometry data
DOI: 10.17608/k6.auckland.7308944
title: Visualisation files for multimorbidity analysis

description: Chromatin interactions (using Hi-C) and functional (using eQTL) data were used to identify long-range regulatory associations involving &gt;20,000 GWAS variants and their target genes (i.e. eGenes) in &gt;1,350 phenotypes in the GWAS Catalog. Using convex biclustering, we segregated phenotypes based on the eGenes they share, which implies a common underlying molecular mechanism. Understanding the roles the eGenes play has potential applications in understanding multimorbidities and drug repurposing.This datasource underlie the figures generated in the study
DOI: 10.6084/m9.figshare.12885635
title: Supporting data of golden pompano genome assembly version 2

description: Golden pompano (Trachinotus ovatus) is a valuable and promising marine species in deep-sea fish farming. Efforts are needed to decode the genome and perform selection breeding. In this study, a chromosome-level genome assembly was constructed with PacBio long reads, Illumina short reads and Hi-C sequences. The N50 length of the preliminary contigs was 23.14 Mb. The chromosome-level assembly included 24 chromosome-level scaffolds and 52 debrises. The assembly was of high quality, with 97.8% of complete BUSCO genes detected, 0.98 of average Pearson correlation coefficient for each chromosome between positions on the assembly and genetic linkage map, and 98.24% of bases assigned a score above 30. The 24 largest scaffolds were 662.70 Mb, accounting for 103.67% of the estimated genome size. A total of 25,720 protein-coding genes and 3,502 ncRNAs were predicted, with 94.0% of the genes being functionally annotated. The completeness and length of transcripts, exons and introns were comparable to those for the annotations of other fishes. Furthermore, the phylogenetic position of this species was determined for the first time, and the divergence time between golden pompano and Asian seabass was estimated to be 82.24 million years ago. Enriched GO terms with transport functions for expanded genes were detected, which may be related to the restless habit of this species. The sex determination mechanism was different from that in Seriola fishes, which belong to the same family. This assembly will be a valuable genomic resource for genome evolution and selection breeding.
DOI: 10.6084/m9.figshare.12885635.v1
title: Supporting data of golden pompano genome assembly version 2

description: Golden pompano (Trachinotus ovatus) is a valuable and promising marine species in deep-sea fish farming. Efforts are needed to decode the genome and perform selection breeding. In this study, a chromosome-level genome assembly was constructed with PacBio long reads, Illumina short reads and Hi-C sequences. The N50 length of the preliminary contigs was 23.14 Mb. The chromosome-level assembly included 24 chromosome-level scaffolds and 52 debrises. The assembly was of high quality, with 97.8% of complete BUSCO genes detected, 0.98 of average Pearson correlation coefficient for each chromosome between positions on the assembly and genetic linkage map, and 98.24% of bases assigned a score above 30. The 24 largest scaffolds were 662.70 Mb, accounting for 103.67% of the estimated genome size. A total of 25,720 protein-coding genes and 3,502 ncRNAs were predicted, with 94.0% of the genes being functionally annotated. The completeness and length of transcripts, exons and introns were comparable to those for the annotations of other fishes. Furthermore, the phylogenetic position of this species was determined for the first time, and the divergence time between golden pompano and Asian seabass was estimated to be 82.24 million years ago. Enriched GO terms with transport functions for expanded genes were detected, which may be related to the restless habit of this species. The sex determination mechanism was different from that in Seriola fishes, which belong to the same family. This assembly will be a valuable genomic resource for genome evolution and selection breeding.
DOI: 10.7284/128293
title: Winch data collected during research cruise RR1717 using a Markey DUSH-5 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17608/k6.auckland.7308944.v1
title: Visualisation files for multimorbidity analysis

description: Chromatin interactions (using Hi-C) and functional (using eQTL) data were used to identify long-range regulatory associations involving &gt;20,000 GWAS variants and their target genes (i.e. eGenes) in &gt;1,350 phenotypes in the GWAS Catalog. Using convex biclustering, we segregated phenotypes based on the eGenes they share, which implies a common underlying molecular mechanism. Understanding the roles the eGenes play has potential applications in understanding multimorbidities and drug repurposing.This datasource underlie the figures generated in the study