cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28601813.v2
title: <b>RatCortex</b><b>-IOS</b>.zip

description: Intrinsic optical signal imaging (IOSI) enables non-invasive monitoring of neural activity in the rat cortex, yet quantitative analysis remains hindered by low signal intensity, complex spatiotemporal patterns, and the lack of standardized benchmarks. To tackle this challenge, we present RatCortex-IOS – a novel open-access video segmentation dataset specifically designed for standardizing IOS analysis in awake rodent models. Meanwhile, we implement an efficient processing pipeline leveraging foundation models to ensure annotation consistency while minimizing manual intervention. The dataset supports quantitative characterization of neural activation parameters including signal propagation velocity and cortical response topography, serving as a critical benchmark for developing automated analysis tools. Furthermore, this resource facilitates technique development in neuroimaging studies and accelerates the integration of computational approaches in IOS-based neuroscience research.
DOI: 10.6084/m9.figshare.28728788.v1
title: Helixer annotation of Banglami genome with interpro functional annotation

description: Genome annotation of Banglami rice landrace with Helixer machine lerning method.
DOI: 10.17632/c3nfsn99hf
title: Data for: Vein-type Tungsten Deposits in Rwanda, Rutsiro area of the Karagwe-Ankole Belt, Central Africa
DOI: 10.17632/pjr69tzxjb
title: Data for: The effects of value co-creation activities on the perceived performance: A service science perspective

description: Co-creation
DOI: 10.6084/m9.figshare.19298807.v1
title: Primary Screening

description: Primary screening results table linked to "Cytopathic SARS-CoV-2 screening on VERO-E6 cells in a large-scale repurposing effort"
DOI: 10.6084/m9.figshare.7016303.v2
title: Physical and geometric determinants of transport in feto-placental microvascular networks: Supplementary Datasets

description: The raw geometric data of Specimen 1 is given in the files Specimen1_Vasculature.stl and Specimen1_Villi.stl. The geometries can be previewed in 3D by clicking on the file names. Further raw villous geometries are available upon request.<br>The files with "N_" in the filename are for computation of the advective-diffusive transport at varying inlet-outlet pressure drops. To evaluate these files, first one must run the flow study, after that the transport study, as the latter uses solutions of the former.<br>The files with "Nmax_" in their fine name are for calculation of the transport capacity, which is purely a diffusion problem. These files can be evaluated simply by running the transport study.<br>The simulations in files "...N_HIGHRES" and "Nmax_HIGHRES" underly Fig. 4, Fig. S3 and Fig. 5A&B. In particular, the geometry is sliced into nine distinct capillaries shown in Fig. 4. To evaluate the fluxes of individual capillaries correctly (and to account for solute concentration boundary layers, should they arise) the pre-programmed mesh settings are at a high resolution: Mesh1 (Stokes problem) has approx. 3mio tetrahedral elements, Mesh 2 (Transport problem) approx. 60mio tetrahedral elements. See details in the supplementary information.<br>The simulations in files "...N_original" and "Nmax_original" (8 in total) underly Figs 2 & 3. The purpose of these files is to calculate transport across an entire network, which is why they do not require as high a resolution: The Stokes meshes have approximately 300k tetrahedral elements and the transport meshes between 3mio and 12mio elements. <br>All Comsol files which do <i>not</i> include "with_solutions" in their file name are saved with compact history, and all meshes and solutions are cleared. For easier reproducibility, the two files marked "with_solutions" contain meshes and solutions, so in order to reproduce the blue curves in Fig. 2 and most of the results of the supplementary information, one can directly evaluate the solutions stored in the "with_solutions" files. <br>Code that creates Fig. 5 is contained in "Fig5-dicrete-network-model_figshare.zip". To produce all the subparts of Fig. 5, run the Mathematica file "Fig5-discrete_network_model.nb" from top to bottom (Evaluation-&gt;Evaluate Notebook). It requires an instllation of Matlab and a link between Mathematica and Matlab to be established via MatLink (http://matlink.org/).
DOI: 10.6084/m9.figshare.28696472.v1
title: CN03Masks

description: CN03 Drug Treatment Dataset. 15 minute resolution. Time-series masks before treatment and after treatment
DOI: 10.6084/m9.figshare.28485914.v1
title: Messingschlager_et_al_6_months_follow-up_samples_n15_scRNA-seq_Nasopharynx_epithelial_cells.rds

description: <pre><pre>This dataset comprises single-cell RNA-Seq data of nasopharyngeal samples of adults 6-month post SARS-CoV-2 infection (n=15) with and without <br>remaining respiratory symptoms (n=6 and 9, respectively).<br><br>An in-depth description is presented in the manuscript "DNA Methylation <br>Changes During Acute COVID-19 are Associated with Long-Term <br>Transcriptional Dysregulation in Patients’ Airway Epithelial Cells".</pre></pre>
DOI: 10.17632/2n6rzpt6d7
title: Data for: Multiproxy approach to characterize the sedimentary process of Cape Darnley Bottom Water flow through the Wild Canyon, East Antarctica

description: This dataset was the original data of mineral and grain size in the Prydz Bay region. This dataset is the main parts of the paper which has submitted to the Marine Geology.
DOI: 10.17632/gfnhp8r52y
title: Python elaboration of Patstat and Orbit data

description: The files included in this repository refer to an example of a patent intelligence approach suitable to focus on the technical implementations concerning the geographic mapping of the marine environment. Having run a search query on the database Orbit Intelligence (Questel), 315 records have been downloaded, the priority years ranging from yr. 2015 to October 2020. The files included allow to reproduce the results of a methodology conceived in order to implement the information available from a typical patent search approach. One goal, dealing on the one hand with the association of a list including technical concepts described in a coincise style with each corresponding patent family belonging to the original dataset, and on the other hand dealing with the necessity of producing a list of keywords ranked according to their frequency of use within the titles of the whole dataset, can be accomplished. To such aim, a quite simple elaboration can be performed with a couple of IPython Notebooks, allowing to generate MS Excel files included in such repository. Such modification of the original dataset allows the user to implement the accessibility to the technical details of the patent data, as well as optionally import the modified data as MS Excel files into the MS Power BI app to achieve a dynamic layout by means of tables and charts allowing to focus on specific features. For example, it is possible to filter the patent documents dealing with a specific technical concept, rather than those including a specific keyword in their titles. An additional goal is aimed at zooming in on a restricted number of patent documents selectable from the original dataset, being there the possibility of clustering the patents based on patterns of either IPC classification codes or on one or more of the 35 technology fields defined by WIPO. Specific patterns based on IPC classification codes or technology fields will appear as distinct clusters of patent documents thanks to the dimensionality reduction allowed by the t-SNE algorithm, which represents a significant implementation with respect to the traditional and less sophisticated approach, being the unambiguous association of a given pattern of IPC classification codes with a well focused, or even unique, technical topic a critical issue. According to the methodology proposed, sub-pools of patent families may be quickly partitioned into macro-categories based on the technical content of each patent document. At the same time, a quantitative analysis of the most representative IPC classification codes or of the predominant technology fields is immediately achieved. The outcome of such clustering approach consists of two pdf files (included in the repository). The patent family identifiers can be immediately detected within each cluster, thanks to the search tool available in Adobe Acrobat, so that the respective bibliographic data may be soon retrieved using such patent family identifier as input of Patstat.
DOI: 10.17632/7tkmt8pcpz
title: DIP paper 10 june 2022 YECSS-D-22-00126

description: Over 2017-2019 and 2022 a series of data on surface temperature nutrients, dissolve oxygen, fecal load, transparency, and other basic parameters were collected in four points of the inner coastal lagoon Estero Salado, Guayaquil, Ecuador
DOI: 10.4121/uuid:a3b551cd-4a6f-443e-9f92-d96123672a83
title: Raw Data of Communication Apprehension Survey of Professions of Health

description: A survey about Communication Apprehension from incoming medical student cohort
DOI: 10.6084/m9.figshare.22256188.v1
title: Investigaton of wine fermentation of three-leaf cayratia (Cayratia trifolia L.) using Saccharomyces cerevisiae 2.1

description: Dataset for manuscript: Investigaton of wine fermentation of three-leaf cayratia (<em>Cayratia trifolia</em> L.) using <em>Saccharomyces cerevisiae</em> 2.1<br> Kieu Tien DT, Quoc Binh LD, Ngoc Mi HT, Thanh NN, Dang Long BH, Phuong Dung NT, Toan HT and Phong HX
DOI: 10.6084/m9.figshare.5126992.v1
title: Supplementary Material for: Outcomes of Infected Cardiovascular Implantable Devices in Dialysis Patients

description: <b><i>Background/Aims:</i></b> Dialysis patients are at a higher risk for cardiovascular implantable electronic device (CIED) infection-related hospitalizations. We compared the outcomes and cost for dialysis and non-dialysis patients hospitalized with CIED infections. <b><i>Methods:</i></b> We conducted a retrospective analysis of the Nationwide Inpatient Sample (NIS) discharge records from 2005 to 2010. Patients with CIED infections were identified using ICD-9 codes for device-related infections or device procedure along with bacteremia, endocarditis or systemic infection. Dialysis patients were identified using ICD-9 codes. Multivariable logistic and linear regressions were performed to examine in-hospital mortality, length of stay and cost. <b><i>Results:</i></b> Of the 87,798 estimated hospitalizations with CIED infections, 6,665 (7.6%) were dialysis patients. CIED-infection-related hospitalization has increased over time among dialysis patients. In-hospital mortality was higher among dialysis patients (13.6% vs. 5.9%, p &lt; 0.001). In the multivariable model, dialysis patients had higher odds of in-hospital mortality (odds ratio 1.98; 95% CI: 1.6, 2.4) compared to the non-dialysis group. Dialysis patients had a longer median length of stay (12 days vs. 7 days, p &lt; 0.001) and majority required extended care facility upon discharge (51.2% vs. 35.0%, p &lt; 0.001) compared to the non-dialysis group. Dialysis status was associated with 50.3% increased cost of hospitalization (p &lt; 0.001). <b><i>Conclusion:</i></b> CIED-infection related hospitalization is increasing among patients undergoing dialysis and is associated with higher in-hospital mortality, longer hospital stay and higher costs of hospitalization. Future studies should examine the reasons for such a high risk and find means to improve outcomes in dialysis population.
DOI: 10.6084/m9.figshare.7837865.v1
title: Supplementary Material 1 The specific primer pairs of the 84 new transcripts.xlsx

description: The specific primer pairs of the 84 new transcripts.
DOI: 10.6084/m9.figshare.9110336.v1
title: Supplementary Material for: First Human Use of a New Robotic-Assisted Fiber Optic Sensing Navigation System for Small Peripheral Pulmonary Nodules

description: <b><i>Background:</i></b> We tested a new, investigational robotic-assisted bronchoscope system with a remotely controlled catheter to access small peripheral bronchi with real-time driving under live visualization and distal tip articulation of the catheter. The unique catheter remains stationary once located at the biopsy position. <b><i>Objectives:</i></b> The primary objectives of this study were to evaluate the safety and feasibility of a new shape-sensing robotic bronchoscope system to bronchoscopically approach and facilitate the sampling of small peripheral pulmonary nodules of 1–3 cm. Secondary objectives included evaluating procedural characteristics and early performance trends associated with the use of the new robotic bronchoscope system. <b><i>Methods:</i></b> Subjects were enrolled according to study eligibility criteria at a single center. Navigation pathways were semi-automatically created using pre-procedure CT scans. Simultaneous (real-time) viewing of actual and virtual bronchi was used real time during navigation to the displayed target. An endobronchial ultrasound mini-probe was used to confirm lesion location. Flexible 19- to 23-G needles specifically designed to accommodate tight bend radii in transbronchial needle aspiration were used along with conventional biopsy tools. Enrolled subjects completed follow-up visits up to 6 months after the procedure. <b><i>Results:</i></b> The study included 29 subjects with a mean lesion size of 12.2 ± 4.2, 12.3 ± 3.3, and 11.7 ± 4.1 mm in the axial, coronal, and sagittal planes, respectively. The CT bronchus sign was absent in 41.4% of cases. In 96.6% of cases, the target was reached, and samples were obtained. No device-related adverse events and no instances of pneumothorax or excessive bleeding were observed during the procedure. Early performance trends demonstrated an overall diagnostic yield of 79.3% and a diagnostic yield for malignancy of 88%. <b><i>Conclusion:</i></b> This new robotic-assisted bronchoscope system safely navigated to very small peripheral airways under continuous visualization, and through maintenance of a static position, it provides a unique sampling capability for the biopsy of small solitary pulmonary nodules.
DOI: 10.6084/m9.figshare.12525524.v1
title: Source Data.xlsx

description: Source data for essential figures in the main text and Supplementary Information of the paper "Ambient methane functionalization initiated by electrochemical oxidaiton of a vanadium (V)-oxo dimer".<br>
DOI: 10.6084/m9.figshare.16578599.v1
title: culture and future orientation

description: dataset of culture and future orientation
DOI: 10.6084/m9.figshare.28405223.v1
title: surveys_river_table

description: Just testing file for data analysis trial
DOI: 10.6084/m9.figshare.8143631.v1
title: Mid-lumbar vertebra of Mustela nivalis (ZMB Mam 56731)

description: Single Tiff file containing a stack of images corresponding to the scan of the mid-lumbar vertebra of Mustela nivalis (ZMB Mam 56731). The resolution of the stack was downgraded, and it has already been binarized, in order to reduced the size of the file.<br>
DOI: 10.6084/m9.figshare.14391500.v1
title: Dataset 1

description: The result of AM RIL of each line was genotyped using the wheat 55K SNP array.
DOI: 10.6084/m9.figshare.20015246.v1
title: Respiratory muscle strength and thoracoabdominal mobility in sedentary elderly, adults and players of adapted volleyball: a pilot study

description: A number of modifications accompany the aging process, including changes in the respiratory system. However, regular physical activity may be an effective way to prevent these alterations. The purpose of this study was to evaluate and compare the thoracoabdominal mobility and respiratory muscle strength, in sedentary individuals and in those who participate in adapted volleyball. Subjects aged 50 and 80 years old that were participating in adapted volleyball for at least one year, and sedentary ones who neither smoked nor presented pulmonary, cardiovascular or musculoskeletal diseases were evaluated for thoracoabdominal mobility by cirtometry at the axillary (CAx), xiphoid (CX) and abdominal (CAb) levels. They were also assessed for respiratory muscle strength by measuring their maximal respiratory pressures (MIP and MEP). The active group had greater values of cirtometry compared to the sedentary group (56.4% higher in CAx, 83.4% in Cx and 63.5% in CAb) and higher values of MEP (41.3% higher in absolute MEP and 39.5% of MEP in predicted %). The MIP (cmH2O and predicted %) did not differ between groups. Participation in adapted volleyball may have contributed to maintained thoracicoabdominal mobility and expiratory muscle strength in these elderly and adults.
DOI: 10.6084/m9.figshare.23161250.v2
title: Mangosteen Transcriptome and Transdecoder Files

description: Mangosteen Illumina RNA sequences were obtained from the NCBI Sequence Read Archive (SRA) databases. Trimmomatic 0.39 was used to remove adaptor sequences and low-quality reads from Illumina data with default parameter (TruSeq3-PE-2.fa:2:30:10 SLIDINGWINDOW:4:5 LEADING:5 TRAILING:5 MINLEN:25). Next, the clean Illumina data was used for <i>de novo</i> transcriptome assembly using Trinity v.2.9.1 with default parameters (adding the following parameter: normalize_by_read_set; min_kmer_cov=2; no bowtie) to generate a single Trinity assembly. After assembly, non-redundant genes/ reference transcriptome were obtained using TGICL with default settings. Next, Transdecoder was used to generate a total of 93,923 predicted peptides.
DOI: 10.6084/m9.figshare.21511008.v1
title: Data underlying figures from "Rapid and predictable genome evolution across three hybrid ant populations"

description: This zipped folder contains all data visualised in the publication "Rapid and predictable genome evolution across three hybrid ant populations". Population history: PCAs, sNMF clustering, mtDNA data and mitotype network, relative likelihoods computed with fastsimcoal2 Local ancestry variations: Twisst, loter and naive painting results, along with the analysis of coalescent simulations. Sorting of genetic variation: local ancestry, gene density and population recombination estimates in 20 kb windows along the genome, output of the genomic permutation approach. Selection in hybridizing species: results of the RAiSD analyses carried in each species (Faq: <em>Formica aquilonia</em>, F. pol: <em>F. polyctena</em>).
DOI: 10.6084/m9.figshare.17054876.v1
title: Metaverse 57篇文献.csv

description: 元宇宙文献列表
DOI: 10.6084/m9.figshare.27896766.v2
title: Ansakis pegreffi EggNog result on trascritpome ORFs

description: Ansakis pegreffi EggNog result on trascritpome ORFs<br>
DOI: 10.6084/m9.figshare.25998289.v1
title: TCQ Abstract Corpus

description: A corpus of all article abstracts published in Technical Communication Quarterly between 1992 and 2023, organized by volume/year.
DOI: 10.6084/m9.figshare.26576021.v1
title: Additional file 1 of Robust classification using average correlations as features (ACF)

description: Additional file 1. Table with p-values for pairwise comparisons between the tested classification approaches on the 5 biologic datasets.
DOI: 10.6084/m9.figshare.7451351.v1
title: Graphs of materials project

description: This file contains the graph representation of structures in the Materials Project (www.materialsproject.org) and target properties, including formation energy per atom, band gap, and for a subset of 5830 structures, the shear moduli G_{VRH} and bulk moduli K_{VRH}. <br><br>This data is part of the our paper "Graph Networks as a Universal Machine Learning Framework for Molecules and Crystals"<br>
DOI: 10.6084/m9.figshare.25927222.v1
title: H19_W

description: Power related data for House 19
DOI: 10.6084/m9.figshare.13814225.v1
title: Metadata record for: In-flight positional and energy use dataset of a DJI Matrice 100 quadcopter for small package delivery

description: This dataset contains key characteristics about the data described in the Data Descriptor In-flight positional and energy use dataset of a DJI Matrice 100 quadcopter for small package delivery. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br>
DOI: 10.6084/m9.figshare.7908365.v1
title: gVCF_NA19007

description: 1000 Genomes gVCF mapped to hs37d5 for NA19007. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.27905937.v1
title: <b>Original data for article:</b><b>Distinct baseline toxicity of </b><b>v</b><b>olatile organic compounds (VOCs) </b><b>in</b><b> </b><b>gaseous and liquid phases</b><b>: </b><b>mixture effects</b><b> and potential molecular mechanisms</b>

description: All original GIF files that can be directly run in Gaussian 16W
DOI: 10.6084/m9.figshare.19919682.v1
title: Circular RNA testis-expressed 14 overexpression induces apoptosis and suppresses migration of ox-LDL-stimulated vascular smooth muscle cells via regulating the microRNA 6509-3p/thanatos-associated domain-containing apoptosis-associated protein 1 axis

description: Atherosclerosis is a severe vascular disorder causing myocardial infarction, stroke, and gangrene. Circular RNA Testis-expressed 14 (hsa_circ_0107197, CircTEX14) is a newly discovered circRNA that may have a critical role in the pathogenesis of atherosclerosis. Here, we aimed to further explore the exact role of circRNA TEX14 in the cardiovascular system. Serum samples of atherosclerosis patients (n = 48) and healthy volunteers (n = 48) were collected to assess circTEX14 expressions. Quantitative reverse transcription-PCR (qRT-PCR), cell proliferation assay, migration assay, cell necrosis assay, Annexin staining, TUNEL assays, RNA immunoprecipitation (RIP) assays, dual-luciferase reporter assays, wound healing assays, and Western blot were performed to examine the roles of circTEX14, miR-6509-3p, and thanatos-associated domain-containing apoptosis-associated protein 1 (THAP1) in ox-LDL-stimulated vascular smooth muscle cells (VSMCs). We found that circTEX14 expressions were decreased and miR-6509-3p expressions were increased in the serum samples of atherosclerosis patients and ox-LDL-stimulated VSMCs. CircTEX14 overexpression inhibited proliferation and migration and enhanced apoptosis of VSMCs. CircTEX14 suppressed miR-6509-3p expressions through direct interaction. MiR-6509-3p or THAP1 knockdown reversed the effects of circTEX14 overexpression on proliferation, migration, and apoptosis of ox-LDL-stimulated VSMCs. In conclusion, circTEX14 inhibited proliferation and enhanced apoptosis via modulating miR-6509-3p/THAP1 in ox-LDL-stimulated VSMCs and might be a useful target for atherosclerosis treatment.
DOI: 10.6084/m9.figshare.28824803.v1
title: IXI363

description: It is segmented MRA image from IXI dataset.
DOI: 10.17632/wwfps636pz
title: Data for: Aleutian Mink Disease Virus in the breeding environment in Poland and its place in the global epidemiology of AMDV

description: Supplementary files: Supplementary material 1 – Types of environmental samples used during analysis Supplementary material 2 – Phylogenetic analysis of obtained variants and sequences previously isolated in Poland by Ryt-Hansen et al. (2017a). Phylogenetic tree prepared by MEGA 6 using the maximum likelihood method with 1,000 bootstrap replicates. Supplementary material 3. Phylogenetic analysis of obtained variants and sequences deposed by Ryt-Hansen et al. (2017a). Phylogenetic tree prepared by MEGA 6 using the maximum likelihood method with 1,000 bootstrap replicates. Supplementary material 4 – Comparison between polymorphic sites in sequences coding NS1 and VP2 protein
DOI: 10.6084/m9.figshare.22108064.v4
title: Larger Black Carp Prefers A Lower Satiation to Fulfill Its Need for An Active Post-Prandial Movement Regulation in An Unfamiliar Environment

description: Complete dataset and Matlab code for data analysis.