cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0199043.10fu
title: SH0199043.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0199044.10fu
title: SH0199044.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.3886/e211421
title: Données sur les citoyens activistes panafricains sur les réseaux sociaux (posts, vidéos, et narratifs analytiques)

description: Plusieurs mondes s’affrontent aujourd’hui dans l’espace public numérique. Le web, constituant en lui-même un monde aux modalités multiples, rencontre aussi l’humain parmi des mondes de structuration, de conviction, de connaissance, de croyance, à l’exception des dispositifs technologiques. Cette contribution interroge le dispositif technologique comme médiateur de ces multi-mondes créateurs de sens pour décrire les activistes qui se déclarent « panafricanistes » sur le web. Comment les jeux narratifs produisent-ils la convergence des représentations mentales pour les enjeux des e-visages discursifs ? Cette étude est à la fois théorique et pratique, suivant la logique des approches discursives par les visages et des modèles mentaux avec traitement semi-automatique des données (logiciel Google et Chat GPT 4). Mots-clés : activistes panafricains, discours numérique, modèles mentaux, construction narrative, e-visages discursifs.
description: Response Rates: Données d'identification
description: De convenance par rapport aux thématiques
description: Les productions des médias centraux mis sur les plateformes numériques YouTube, les publications citoyennes des comptes privés des activistes. Il s'agit de :  <br>-Banda Kani <br>- Nathalie Yamb <br>-Kemi Seba <br>- Prof Franklin Nyamsi <br>Les thématiques au centre des publications : la reprise de Kidal par l'armée malienne et la levée des sanctions de la CEDEAO contre le Niger la naissance de l'Alliance pour les Etats du Sahel (AES) <br>- supports : vidéos . Smallest Geographic Unit: c'est l'idéologie
description: web scraping; Voir les métadonnées sur les vidéos (doc Pdf accompagnant les vidéos)
DOI: 10.3886/e211421v1
title: Données sur les citoyens activistes panafricains sur les réseaux sociaux (posts, vidéos, et narratifs analytiques)

description: Plusieurs mondes s’affrontent aujourd’hui dans l’espace public numérique. Le web, constituant en lui-même un monde aux modalités multiples, rencontre aussi l’humain parmi des mondes de structuration, de conviction, de connaissance, de croyance, à l’exception des dispositifs technologiques. Cette contribution interroge le dispositif technologique comme médiateur de ces multi-mondes créateurs de sens pour décrire les activistes qui se déclarent « panafricanistes » sur le web. Comment les jeux narratifs produisent-ils la convergence des représentations mentales pour les enjeux des e-visages discursifs ? Cette étude est à la fois théorique et pratique, suivant la logique des approches discursives par les visages et des modèles mentaux avec traitement semi-automatique des données (logiciel Google et Chat GPT 4). Mots-clés : activistes panafricains, discours numérique, modèles mentaux, construction narrative, e-visages discursifs.
description: Response Rates: Données d'identification
description: De convenance par rapport aux thématiques
description: Les productions des médias centraux mis sur les plateformes numériques YouTube, les publications citoyennes des comptes privés des activistes. Il s'agit de :  <br>-Banda Kani <br>- Nathalie Yamb <br>-Kemi Seba <br>- Prof Franklin Nyamsi <br>Les thématiques au centre des publications : la reprise de Kidal par l'armée malienne et la levée des sanctions de la CEDEAO contre le Niger la naissance de l'Alliance pour les Etats du Sahel (AES) <br>- supports : vidéos . Smallest Geographic Unit: c'est l'idéologie
description: web scraping; Voir les métadonnées sur les vidéos (doc Pdf accompagnant les vidéos)
DOI: 10.15468/dl.4eb5h2
title: Occurrence Download

description: A dataset containing 370 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abies cephalonica Loudon)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 370 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025750-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tkjz3m
title: Occurrence Download

description: A dataset containing 12039 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Europe)",
 "DatasetKey is Herbarium specimens of Université de Montpellier 2, Institut de Botanique (MPU))",
 "TypeStatus is one of (Syntype, Isotype, Isosyntype, Holotype, Unspecified type, Paratype, Lectotype, Neotype, Isolectotype, Isoparatype, Isoneotype, Epitype)"
 ]
}

 The dataset includes 12039 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025751-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4jvng
title: Occurrence Download

description: A dataset containing 41154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acacia dealbata Link)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 41154 records from 282 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025752-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24922758
title: Species data for Opposite effects of climate and land-use/cover change on Mediterranean herpetofauna: Insights from the southern Apennines

description: Climate change and natural land conversion are causing dramatic shifts in species distribution. Amphibians and reptiles, ectothermic animals with limited dispersal ability, and Mediterranean mountain ranges, which are home to numerous locally adapted taxa, are especially vulnerable to these threats. This is the case with Cilento, a highly biodiverse yet under-investigated area in the southern Apennine Mountains that is protected by a National Park and 30 Natura 2000 sites. We used bias-corrected species distribution models and area of habitat (AOH) maps to assess the potential combined impact of climate and land-use change on 11 amphibians and 16 reptiles in the Park and overlapping Natura 2000 sites. The former estimates species climatic suitability (CS) by correlating species presence to climatic characteristics, whereas the latter classifies the land-use types based on species–habitat relationships. We estimated CS and AOH for current conditions and two climate and land-use/cover change scenarios: one of sustainability (SSP1-2.6) and one of fossil-fueled development (SSP5-8.5). Under both scenarios, most species showed significant CS loss, with the greatest declines estimated for amphibians and under SSP5-8.5. Highland species appear to be the most vulnerable, whereas lowland species may gain CS. Given the widespread renaturalization of agricultural land under both scenarios, most species did not show declines in AOH due to land-use change. However, all species were projected to face significant shifts in CS under both scenarios, presenting a crucial challenge to their survival. These findings offer valuable insights for climate mitigation initiatives aimed at securing the long-term protection of herpetofauna within Cilento's protected areas.
DOI: 10.6084/m9.figshare.24922758.v1
title: Species data for Opposite effects of climate and land-use/cover change on Mediterranean herpetofauna: Insights from the southern Apennines

description: Climate change and natural land conversion are causing dramatic shifts in species distribution. Amphibians and reptiles, ectothermic animals with limited dispersal ability, and Mediterranean mountain ranges, which are home to numerous locally adapted taxa, are especially vulnerable to these threats. This is the case with Cilento, a highly biodiverse yet under-investigated area in the southern Apennine Mountains that is protected by a National Park and 30 Natura 2000 sites. We used bias-corrected species distribution models and area of habitat (AOH) maps to assess the potential combined impact of climate and land-use change on 11 amphibians and 16 reptiles in the Park and overlapping Natura 2000 sites. The former estimates species climatic suitability (CS) by correlating species presence to climatic characteristics, whereas the latter classifies the land-use types based on species–habitat relationships. We estimated CS and AOH for current conditions and two climate and land-use/cover change scenarios: one of sustainability (SSP1-2.6) and one of fossil-fueled development (SSP5-8.5). Under both scenarios, most species showed significant CS loss, with the greatest declines estimated for amphibians and under SSP5-8.5. Highland species appear to be the most vulnerable, whereas lowland species may gain CS. Given the widespread renaturalization of agricultural land under both scenarios, most species did not show declines in AOH due to land-use change. However, all species were projected to face significant shifts in CS under both scenarios, presenting a crucial challenge to their survival. These findings offer valuable insights for climate mitigation initiatives aimed at securing the long-term protection of herpetofauna within Cilento's protected areas.
DOI: 10.15468/dl.e37vtk
title: Occurrence Download

description: A dataset containing 22228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acacia mearnsii De Wild.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 22228 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025753-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14194250
title: Diverging repeatomes in holoparasitic Hydnoraceae uncover a playground of genome evolution

description: The present repository provides a FASTA resource with reference sequences of major repetitive DNA sequences from the genomes of Hydnora and Prosopanche species. This sequence list is complemented by a GFF file with detailed annotations for the included retrotransposons. The nuclear genomes of parasitic plants have undergone unique evolutionary trajectories to adapt to the heterotrophic lifestyle. These adaptations often involve large genomic alterations, potentially driven by repetitive elements. Despite the well-recognized role of repetitive DNAs as evolutionary forces in shaping plant genomes, their role in genome evolution of parasitic plants remains largely unexplored. To address this knowledge gap, we conducted the first analysis of repetitive DNAs in eleven genomes of Hydnoraceae, a family of mostly non-crop parasitizing holoparasites.

The observed repeat abundance profiles and presence-absence patterns align with the phylogenetic relationships, geographical distribution, and host shifts, suggesting a key role of repetitive DNAs in shaping Hydnoraceae genomes. The repetitive fraction of the two Hydnoraceae genera, Hydnora and Prosopanche, are fundamentally different: Whereas the eight analyzed Hydnora genomes are largely populated by long terminal repeat retrotransposons, particularly of the Tekay and Ogre type, the three Prosopanche repeatomes differ vastly in individual abundances, including P. bonacinae with massive amplifications of a single DNA transposon and P. panguanensis with over 15% 5S rDNA (as opposed to some Hydnoraceae with <0.1% 5S rDNA). Both extremely low and very high abundance of 5S rDNA challenges our current understanding for chromosome stabilization and rRNA transcription.

These genome dynamics suggest rapidly evolving repeat profiles, potentially being enhanced by the adaptation to the parasitic lifestyle. The heterogeneous abundance of rDNAs and DNA transposons in Hydnoraceae genomes needs further attention, with regard to repeat-driven evolution. This study lays the groundwork for future genomic explorations on Hydnoraceae, as well as heterotrophic plants and their nuclear genome composition in general.
DOI: 10.5281/zenodo.14194251
title: Diverging repeatomes in holoparasitic Hydnoraceae uncover a playground of genome evolution

description: The present repository provides a FASTA resource with reference sequences of major repetitive DNA sequences from the genomes of Hydnora and Prosopanche species. This sequence list is complemented by a GFF file with detailed annotations for the included retrotransposons. The nuclear genomes of parasitic plants have undergone unique evolutionary trajectories to adapt to the heterotrophic lifestyle. These adaptations often involve large genomic alterations, potentially driven by repetitive elements. Despite the well-recognized role of repetitive DNAs as evolutionary forces in shaping plant genomes, their role in genome evolution of parasitic plants remains largely unexplored. To address this knowledge gap, we conducted the first analysis of repetitive DNAs in eleven genomes of Hydnoraceae, a family of mostly non-crop parasitizing holoparasites.

The observed repeat abundance profiles and presence-absence patterns align with the phylogenetic relationships, geographical distribution, and host shifts, suggesting a key role of repetitive DNAs in shaping Hydnoraceae genomes. The repetitive fraction of the two Hydnoraceae genera, Hydnora and Prosopanche, are fundamentally different: Whereas the eight analyzed Hydnora genomes are largely populated by long terminal repeat retrotransposons, particularly of the Tekay and Ogre type, the three Prosopanche repeatomes differ vastly in individual abundances, including P. bonacinae with massive amplifications of a single DNA transposon and P. panguanensis with over 15% 5S rDNA (as opposed to some Hydnoraceae with <0.1% 5S rDNA). Both extremely low and very high abundance of 5S rDNA challenges our current understanding for chromosome stabilization and rRNA transcription.

These genome dynamics suggest rapidly evolving repeat profiles, potentially being enhanced by the adaptation to the parasitic lifestyle. The heterogeneous abundance of rDNAs and DNA transposons in Hydnoraceae genomes needs further attention, with regard to repeat-driven evolution. This study lays the groundwork for future genomic explorations on Hydnoraceae, as well as heterotrophic plants and their nuclear genome composition in general.
DOI: 10.15468/dl.4jar7a
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lagochilus diacanthophyllus (Pall.) Benth."
 ]
}

 The dataset includes 57 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025754-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjdpnu
title: Occurrence Download

description: A dataset containing 1793 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Polybia occidentalis (Olivier, 1791)"
 ]
}

 The dataset includes 1793 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025755-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvzr4f
title: Occurrence Download

description: A dataset containing 1283 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acacia provincialis A.Camus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 1283 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025756-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22tbcs
title: Occurrence Download

description: A dataset listing the 704 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Italy",
 "GadmGid is ITA.7.4.130_1",
 "GbifRegion is Europe and Central Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 704 records were derived from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025748-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebfr5u
title: Occurrence Download

description: A dataset listing the 1282 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Italy",
 "GadmGid is ITA.9.3.15_1",
 "GbifRegion is Europe and Central Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 1282 records were derived from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025749-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2kmgwp
title: Occurrence Download

description: A dataset listing the 5252 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Italy",
 "GadmGid is ITA.17.1.8_1",
 "GbifRegion is Europe and Central Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 5252 records were derived from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025747-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13119885
title: Total mercury (Hg) concentrations in beaks and muscle of the giant warty squid Moroteuthopsis longimana (Southern Ocean)

description: In this study we used beaks and buccal masses (muscle) of the giant warty squid Moroteuthopsis longimana to evaluate if squid beaks can be used as a proxy for mercury (Hg) concentrations in the muscle. Beaks and respective buccal masses were collected from the diet of Antarctic toothfish Dissostichus mawsoni captured at the South Sandwich Islands (Atlantic Sector of the Southern Ocean; CCAMLR Subarea 48.4) in 2019 (ML1 to ML12) and 2020 (ML13 to ML21).

We analysed Total Hg concentrations in the wing of the lower beak, hood tip of the upper beak, both upper and lower beaks, and in muscle sampled from buccal masses.

This dataset includes the size of the beaks, the estimated mantle length, the estimated mass, and total Hg concentrations analysed in beaks and buccle mass in 21 individuals of M. longimana.

This dataset is associated with the article: Lopes-Santos S, Xavier JC, Seco J, Coelho JP, Hollyman PR, Pereira E, Phillips RA, Queirós JP (2025) Squid beaks as a proxy for mercury concentrations in muscle of the giant warty squid Moroteuthopsis longimana. Marine Environmental Research 204:106841. Doi 10.1016/j.marenvres.2024.106841
DOI: 10.5281/zenodo.13119886
title: Total mercury (Hg) concentrations in beaks and muscle of the giant warty squid Moroteuthopsis longimana (Southern Ocean)

description: In this study we used beaks and buccal masses (muscle) of the giant warty squid Moroteuthopsis longimana to evaluate if squid beaks can be used as a proxy for mercury (Hg) concentrations in the muscle. Beaks and respective buccal masses were collected from the diet of Antarctic toothfish Dissostichus mawsoni captured at the South Sandwich Islands (Atlantic Sector of the Southern Ocean; CCAMLR Subarea 48.4) in 2019 (ML1 to ML12) and 2020 (ML13 to ML21).

We analysed Total Hg concentrations in the wing of the lower beak, hood tip of the upper beak, both upper and lower beaks, and in muscle sampled from buccal masses.

This dataset includes the size of the beaks, the estimated mantle length, the estimated mass, and total Hg concentrations analysed in beaks and buccle mass in 21 individuals of M. longimana.

This dataset is associated with the article: Lopes-Santos S, Xavier JC, Seco J, Coelho JP, Hollyman PR, Pereira E, Phillips RA, Queirós JP (2025) Squid beaks as a proxy for mercury concentrations in muscle of the giant warty squid Moroteuthopsis longimana. Marine Environmental Research 204:106841. Doi 10.1016/j.marenvres.2024.106841
DOI: 10.15468/dl.a8uwp4
title: Occurrence Download

description: A dataset containing 19485 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acacia pycnantha Benth.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 19485 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025757-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.