cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5549812.v1
title: TW_1185_g_egg_60x

description: Original image stacks of Eocene Baltic amber inclusions, the type series for <br><br>Acari: Trombidiformes: Eleutherengona: Myobiidae: <br><br>Prohylomysobia erinaceophilus Sidorchuk and Bochkov in <br><br>Sidorchuk et al. 2017 Journal of Systematic Paleontology. In <br><br>Baltic amber piece, originally from the private collection of <br><br>Thomas Weiterchan, coll. # 1185 (TW 1185), housed by GPIH, <br><br>collection number 4597. Specimen number and microscopy <br><br>magnification indicated in file name.<br><br>Images are obtained with Nikon Eclipse 800 compound <br><br>microscope, mostly with 60x water immersion lens, Stacks of <br><br>images were obtained with a Nikon DS-Fi1 digital camera <br><br>(coded as "Vals" in th file names) or Nikon D7000 camera (see <br><br>filenames), color-, noise- and sharpness-enhanced with Adobe <br><br>Photoshop Lightroom 5.7.1. Combined images made with the aid <br><br>of Helicon Focus Pro 6.5.2, algorithm A, with subsequent <br><br>manual transfer of significant details taken from the <br><br>individual images, as necessary (_comb in the file names). <br><br>Scale bars are provided in the same collection: as a separate <br><br>folder for Vals camera and as additional files in the image <br><br>stacks from the Nikon D7000 camera.
DOI: 10.6084/m9.figshare.5549917.v1
title: Mapping of reads to genomes

description: <b>Additional Information to Figure 4: Coverage of bacterial i) reference genomes and ii) isolates by metagenomic reads from vitreous of endophthalmitis patients.</b> For each individual patient, the metagenomic shotgun reads for the most abundant microbial organism were extracted and mapped to the respective reference genome sequence in the database. For patients C1 and I7 a microbial organism could not be assigned confidently, and these patients are regarded as “sterile” endophthalmitis cases. <br>In the two cases where metagenomics analysis and culture results from the hospital were not identical (patients C5 and I3), we examined the reads for all organisms detected in the metagenomics analysis.<br>For the patients for which isolates were obtained and WGS generated, we mapped the respective metagenomic shotgun reads to these assemblies.<br>The most outer circle displays the genome sequence (including scaffolds and contigs). The orange and blue inner circles display the depth of mapped reads originating from the samples that were extracted with the QIA and UCP DNA extraction methods, respectively.<br><br><b>Reference</b> <b>Kirstahler P, Bjerrum SS, Friis-Møller A, </b><b>la Cour M, Aarestrup FM, Westh H., and Pamp SJ. (2017) </b>Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid.<b> Journal </b>Vol:Issue page-page.
DOI: 10.6084/m9.figshare.5549800
title: TW_1185e-f_Myo_LL_60x

description: Original image stacks of Eocene Baltic amber inclusions, the type series for <br><br>Acari: Trombidiformes: Eleutherengona: Myobiidae: <br><br>Prohylomysobia erinaceophilus Sidorchuk and Bochkov in <br><br>Sidorchuk et al. 2017 Journal of Systematic Paleontology. In <br><br>Baltic amber piece, originally from the private collection of <br><br>Thomas Weiterchan, coll. # 1185 (TW 1185), housed by GPIH, <br><br>collection number 4597. Specimen number and microscopy <br><br>magnification indicated in file name.<br><br>Images are obtained with Nikon Eclipse 800 compound <br><br>microscope, mostly with 60x water immersion lens, Stacks of <br><br>images were obtained with a Nikon DS-Fi1 digital camera <br><br>(coded as "Vals" in th file names) or Nikon D7000 camera (see <br><br>filenames), color-, noise- and sharpness-enhanced with Adobe <br><br>Photoshop Lightroom 5.7.1. Combined images made with the aid <br><br>of Helicon Focus Pro 6.5.2, algorithm A, with subsequent <br><br>manual transfer of significant details taken from the <br><br>individual images, as necessary (_comb in the file names). <br><br>Scale bars are provided in the same collection: as a separate <br><br>folder for Vals camera and as additional files in the image <br><br>stacks from the Nikon D7000 camera.
DOI: 10.6084/m9.figshare.5549803
title: The third dimension of political mapping: exploiting map interactivity for a better understanding of election and referendum results

description: Density-equalizing cartograms in the Euclidian plane are the usual cartographic solution for the discrepancy between the topographic nature of the GIS map, reflecting the extent of land surfaces, and the demographic nature of a vote, pertaining to the number of voters expressing a given political choice. Cartograms adapt map polygon areas to population sizes. Contemporary mapping technologies allow a different approach by giving access to interactive models in which the third dimension of space can be used to reflect a demographic variable while leaving the topographic base-map intact. This offers an answer to concerns about cartogram readability by the general public. Examples from Austrian election and Swiss referendum results are given to illustrate our approach.
DOI: 10.6084/m9.figshare.5549917.v3
title: Mapping of reads to genomes - (Item I)

description: <b>Additional Information to Figure 4: Coverage of bacterial i) reference genomes and ii) isolates by metagenomic reads from vitreous of endophthalmitis patients.</b> For each individual patient, the metagenomic shotgun reads for the most abundant microbial organism were extracted and mapped to the respective reference genome sequence in the database. For patients C1 and I7 a microbial organism could not be assigned confidently, and these patients are regarded as “sterile” endophthalmitis cases. <br>In the two cases where metagenomics analysis and culture results from the hospital were not identical (patients C5 and I3), we examined the reads for all organisms detected in the metagenomics analysis.<br>For the patients for which isolates were obtained and WGS generated, we mapped the respective metagenomic shotgun reads to these assemblies.<br>The most outer circle displays the genome sequence (including scaffolds and contigs). The orange and blue inner circles display the depth of mapped reads originating from the samples that were extracted with the QIA and UCP DNA extraction methods, respectively.<br><br><b>Reference</b> <b>Kirstahler P, Bjerrum SS, Friis-Møller A, </b><b>la Cour M, Aarestrup FM, Westh H., and Pamp SJ. (2018) </b>Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid.<b> </b><b>Scientific Reports</b>, doi:10.1038/s41598-018-22416-4.
DOI: 10.6084/m9.figshare.5549800.v1
title: TW_1185e-f_Myo_LL_60x

description: Original image stacks of Eocene Baltic amber inclusions, the type series for <br><br>Acari: Trombidiformes: Eleutherengona: Myobiidae: <br><br>Prohylomysobia erinaceophilus Sidorchuk and Bochkov in <br><br>Sidorchuk et al. 2017 Journal of Systematic Paleontology. In <br><br>Baltic amber piece, originally from the private collection of <br><br>Thomas Weiterchan, coll. # 1185 (TW 1185), housed by GPIH, <br><br>collection number 4597. Specimen number and microscopy <br><br>magnification indicated in file name.<br><br>Images are obtained with Nikon Eclipse 800 compound <br><br>microscope, mostly with 60x water immersion lens, Stacks of <br><br>images were obtained with a Nikon DS-Fi1 digital camera <br><br>(coded as "Vals" in th file names) or Nikon D7000 camera (see <br><br>filenames), color-, noise- and sharpness-enhanced with Adobe <br><br>Photoshop Lightroom 5.7.1. Combined images made with the aid <br><br>of Helicon Focus Pro 6.5.2, algorithm A, with subsequent <br><br>manual transfer of significant details taken from the <br><br>individual images, as necessary (_comb in the file names). <br><br>Scale bars are provided in the same collection: as a separate <br><br>folder for Vals camera and as additional files in the image <br><br>stacks from the Nikon D7000 camera.
DOI: 10.6084/m9.figshare.5549917.v2
title: Mapping of reads to genomes - (Item I)

description: <b>Additional Information to Figure 4: Coverage of bacterial i) reference genomes and ii) isolates by metagenomic reads from vitreous of endophthalmitis patients.</b> For each individual patient, the metagenomic shotgun reads for the most abundant microbial organism were extracted and mapped to the respective reference genome sequence in the database. For patients C1 and I7 a microbial organism could not be assigned confidently, and these patients are regarded as “sterile” endophthalmitis cases. <br>In the two cases where metagenomics analysis and culture results from the hospital were not identical (patients C5 and I3), we examined the reads for all organisms detected in the metagenomics analysis.<br>For the patients for which isolates were obtained and WGS generated, we mapped the respective metagenomic shotgun reads to these assemblies.<br>The most outer circle displays the genome sequence (including scaffolds and contigs). The orange and blue inner circles display the depth of mapped reads originating from the samples that were extracted with the QIA and UCP DNA extraction methods, respectively.<br><br><b>Reference</b> <b>Kirstahler P, Bjerrum SS, Friis-Møller A, </b><b>la Cour M, Aarestrup FM, Westh H., and Pamp SJ. (2017) </b>Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid.<b> Journal </b>Vol:Issue page-page.
DOI: 10.6084/m9.figshare.5549797
title: TW_1185d_Myo_N

description: Original image stacks of Eocene Baltic amber inclusions, the type series for <br><br>Acari: Trombidiformes: Eleutherengona: Myobiidae: <br><br>Prohylomysobia erinaceophilus Sidorchuk and Bochkov in <br><br>Sidorchuk et al. 2017 Journal of Systematic Paleontology. In <br><br>Baltic amber piece, originally from the private collection of <br><br>Thomas Weiterchan, coll. # 1185 (TW 1185), housed by GPIH, <br><br>collection number 4597. Specimen number and microscopy <br><br>magnification indicated in file name.<br><br>Images are obtained with Nikon Eclipse 800 compound <br><br>microscope, mostly with 60x water immersion lens, Stacks of <br><br>images were obtained with a Nikon DS-Fi1 digital camera <br><br>(coded as "Vals" in th file names) or Nikon D7000 camera (see <br><br>filenames), color-, noise- and sharpness-enhanced with Adobe <br><br>Photoshop Lightroom 5.7.1. Combined images made with the aid <br><br>of Helicon Focus Pro 6.5.2, algorithm A, with subsequent <br><br>manual transfer of significant details taken from the <br><br>individual images, as necessary (_comb in the file names). <br><br>Scale bars are provided in the same collection: as a separate <br><br>folder for Vals camera and as additional files in the image <br><br>stacks from the Nikon D7000 camera.
DOI: 10.6084/m9.figshare.5549803.v1
title: The third dimension of political mapping: exploiting map interactivity for a better understanding of election and referendum results

description: Density-equalizing cartograms in the Euclidian plane are the usual cartographic solution for the discrepancy between the topographic nature of the GIS map, reflecting the extent of land surfaces, and the demographic nature of a vote, pertaining to the number of voters expressing a given political choice. Cartograms adapt map polygon areas to population sizes. Contemporary mapping technologies allow a different approach by giving access to interactive models in which the third dimension of space can be used to reflect a demographic variable while leaving the topographic base-map intact. This offers an answer to concerns about cartogram readability by the general public. Examples from Austrian election and Swiss referendum results are given to illustrate our approach.
DOI: 10.6084/m9.figshare.5549749
title: TW_1185_Myobiidae_ventr_ant_60x

description: Original image stacks of Eocene Baltic amber inclusions, the type series for <br><br>Acari: Trombidiformes: Eleutherengona: Myobiidae: <br><br>Prohylomysobia erinaceophilus Sidorchuk and Bochkov in <br><br>Sidorchuk et al. 2017 Journal of Systematic Paleontology. In <br><br>Baltic amber piece, originally from the private collection of <br><br>Thomas Weiterchan, coll. # 1185 (TW 1185), housed by GPIH, <br><br>collection number 4597. Specimen number and microscopy <br><br>magnification indicated in file name.<br><br>Images are obtained with Nikon Eclipse 800 compound <br><br>microscope, mostly with 60x water immersion lens, Stacks of <br><br>images were obtained with a Nikon DS-Fi1 digital camera <br><br>(coded as "Vals" in th file names) or Nikon D7000 camera (see <br><br>filenames), color-, noise- and sharpness-enhanced with Adobe <br><br>Photoshop Lightroom 5.7.1. Combined images made with the aid <br><br>of Helicon Focus Pro 6.5.2, algorithm A, with subsequent <br><br>manual transfer of significant details taken from the <br><br>individual images, as necessary (_comb in the file names). <br><br>Scale bars are provided in the same collection: as a separate <br><br>folder for Vals camera and as additional files in the image <br><br>stacks from the Nikon D7000 camera.
DOI: 10.6084/m9.figshare.5549752
title: scale bars to Myobiidae images

description: See magnification in the filenames. The bars are images of a 1 mm object micrometer (small scale division is 10 micrometers) at the same microscope, magnifications and camera as the mites and hairs in files containing term "Vals". For the others, scale bars are in the same folders as images.<br>
DOI: 10.6084/m9.figshare.5549788
title: TW_1185b_hairs

description: Original image stacks of the Baltic amber (Eocene) inclusions, hairs of the host for Acari: Trombidiformes: Eleutherengona: Myobiidae: Prohylomysobia erinaceophilus Sidorchuk and Bochkov in Sidorchuk et al. 2017 Journal of Systematic Paleontology. In Baltic amber piece, originally from the private collection of Thomas Weiterchan, coll. # 1185 (TW 1185), housed by GPIH, collection number 4597. Specimen number and microscopy magnification indicated in file name.<br><br>Images are obtained with Nikon Eclipse 800 compound microscope, mostly with 60x water immersion lens, Stacks of images were obtained with a Nikon DS-Fi1 digital camera (coded as "Vals" in th file names) or Nikon D7000 camera (see filenames), color-, noise- and sharpness-enhanced with Adobe Photoshop Lightroom 5.7.1. Combined images made with the aid of Helicon Focus Pro 6.5.2, algorithm A, with subsequent manual transfer of significant details taken from the individual images, as necessary (_comb in the file names). Scale bars are provided in the same collection: as a separate folder for Vals camera and as additional files in the image stacks from the Nikon D7000 camera.<br><br>
DOI: 10.6084/m9.figshare.5549794
title: TW_1185c_Myo_L

description: Original image stacks of the holotype for Acari: Trombidiformes: Eleutherengona: Myobiidae: Prohylomysobia erinaceophilus Sidorchuk and Bochkov in Sidorchuk et al. 2017 Journal of Systematic Paleontology. In Baltic amber piece, originally from the private collection of Thomas Weiterchan, coll. # 1185 (TW 1185), housed by GPIH, collection number 4597. Specimen number, age and microscopy magnification indicated in file name.<br><br>Images are obtained with Nikon Eclipse 800 compound microscope, mostly with 60x water immersion lens, Stacks of images were obtained with a Nikon DS-Fi1 digital camera (coded as "Vals" in th file names) or Nikon D7000 camera (see filenames), color-, noise- and sharpness-enhanced with Adobe Photoshop Lightroom 5.7.1. Combined images made with the aid of Helicon Focus Pro 6.5.2, algorithm A, with subsequent manual transfer of significant details taken from the individual images, as necessary (_comb in the file names). Scale bars are provided in the same collection: as a separate folder for Vals camera and as additional files in the image stacks from the Nikon D7000 camera.<br><br>
DOI: 10.6084/m9.figshare.5549749.v1
title: TW_1185_Myobiidae_ventr_ant_60x

description: Original image stacks of Eocene Baltic amber inclusions, the type series for <br><br>Acari: Trombidiformes: Eleutherengona: Myobiidae: <br><br>Prohylomysobia erinaceophilus Sidorchuk and Bochkov in <br><br>Sidorchuk et al. 2017 Journal of Systematic Paleontology. In <br><br>Baltic amber piece, originally from the private collection of <br><br>Thomas Weiterchan, coll. # 1185 (TW 1185), housed by GPIH, <br><br>collection number 4597. Specimen number and microscopy <br><br>magnification indicated in file name.<br><br>Images are obtained with Nikon Eclipse 800 compound <br><br>microscope, mostly with 60x water immersion lens, Stacks of <br><br>images were obtained with a Nikon DS-Fi1 digital camera <br><br>(coded as "Vals" in th file names) or Nikon D7000 camera (see <br><br>filenames), color-, noise- and sharpness-enhanced with Adobe <br><br>Photoshop Lightroom 5.7.1. Combined images made with the aid <br><br>of Helicon Focus Pro 6.5.2, algorithm A, with subsequent <br><br>manual transfer of significant details taken from the <br><br>individual images, as necessary (_comb in the file names). <br><br>Scale bars are provided in the same collection: as a separate <br><br>folder for Vals camera and as additional files in the image <br><br>stacks from the Nikon D7000 camera.
DOI: 10.6084/m9.figshare.5549788.v1
title: TW_1185b_hairs

description: Original image stacks of the Baltic amber (Eocene) inclusions, hairs of the host for Acari: Trombidiformes: Eleutherengona: Myobiidae: Prohylomysobia erinaceophilus Sidorchuk and Bochkov in Sidorchuk et al. 2017 Journal of Systematic Paleontology. In Baltic amber piece, originally from the private collection of Thomas Weiterchan, coll. # 1185 (TW 1185), housed by GPIH, collection number 4597. Specimen number and microscopy magnification indicated in file name.<br><br>Images are obtained with Nikon Eclipse 800 compound microscope, mostly with 60x water immersion lens, Stacks of images were obtained with a Nikon DS-Fi1 digital camera (coded as "Vals" in th file names) or Nikon D7000 camera (see filenames), color-, noise- and sharpness-enhanced with Adobe Photoshop Lightroom 5.7.1. Combined images made with the aid of Helicon Focus Pro 6.5.2, algorithm A, with subsequent manual transfer of significant details taken from the individual images, as necessary (_comb in the file names). Scale bars are provided in the same collection: as a separate folder for Vals camera and as additional files in the image stacks from the Nikon D7000 camera.<br><br>
DOI: 10.6084/m9.figshare.5549797.v1
title: TW_1185d_Myo_N

description: Original image stacks of Eocene Baltic amber inclusions, the type series for <br><br>Acari: Trombidiformes: Eleutherengona: Myobiidae: <br><br>Prohylomysobia erinaceophilus Sidorchuk and Bochkov in <br><br>Sidorchuk et al. 2017 Journal of Systematic Paleontology. In <br><br>Baltic amber piece, originally from the private collection of <br><br>Thomas Weiterchan, coll. # 1185 (TW 1185), housed by GPIH, <br><br>collection number 4597. Specimen number and microscopy <br><br>magnification indicated in file name.<br><br>Images are obtained with Nikon Eclipse 800 compound <br><br>microscope, mostly with 60x water immersion lens, Stacks of <br><br>images were obtained with a Nikon DS-Fi1 digital camera <br><br>(coded as "Vals" in th file names) or Nikon D7000 camera (see <br><br>filenames), color-, noise- and sharpness-enhanced with Adobe <br><br>Photoshop Lightroom 5.7.1. Combined images made with the aid <br><br>of Helicon Focus Pro 6.5.2, algorithm A, with subsequent <br><br>manual transfer of significant details taken from the <br><br>individual images, as necessary (_comb in the file names). <br><br>Scale bars are provided in the same collection: as a separate <br><br>folder for Vals camera and as additional files in the image <br><br>stacks from the Nikon D7000 camera.
DOI: 10.6084/m9.figshare.5549746
title: Cloacal microbiota of barn swallows from Northern Italy

description: Bird gut microbiota shows large variation among geographical populations of the same species – probably because, differently from mammals, gut microbiota of birds is largely affected by extrinsic factors such as diet and environmental conditions. We analysed the cloacal microbiota (CM) of 12 barn swallows (<i>Hirundo rustica</i>) from a colony in Northern Italy by high-throughput DNA sequencing of the 16S rRNA gene. The CMs, dominated by bacteria of the phyla Proteobacteria, Actinobacteria, Firmicutes and Bacteroidetes, did not significantly differ between adult females, adult males and fledglings. This first description of barn swallow CM in Italy, together with two previous studies from Europe, suggests that CMs of geographically different barn swallow populations are dominated by bacteria belonging to the same phyla but different genera. The intra-colony similarity of the CMs may be due to the exposure of individuals to the same local environmental conditions while on their breeding grounds.
DOI: 10.6084/m9.figshare.5549752.v1
title: scale bars to Myobiidae images

description: See magnification in the filenames. The bars are images of a 1 mm object micrometer (small scale division is 10 micrometers) at the same microscope, magnifications and camera as the mites and hairs in files containing term "Vals". For the others, scale bars are in the same folders as images.<br>
DOI: 10.6084/m9.figshare.5549794.v1
title: TW_1185c_Myo_L

description: Original image stacks of the holotype for Acari: Trombidiformes: Eleutherengona: Myobiidae: Prohylomysobia erinaceophilus Sidorchuk and Bochkov in Sidorchuk et al. 2017 Journal of Systematic Paleontology. In Baltic amber piece, originally from the private collection of Thomas Weiterchan, coll. # 1185 (TW 1185), housed by GPIH, collection number 4597. Specimen number, age and microscopy magnification indicated in file name.<br><br>Images are obtained with Nikon Eclipse 800 compound microscope, mostly with 60x water immersion lens, Stacks of images were obtained with a Nikon DS-Fi1 digital camera (coded as "Vals" in th file names) or Nikon D7000 camera (see filenames), color-, noise- and sharpness-enhanced with Adobe Photoshop Lightroom 5.7.1. Combined images made with the aid of Helicon Focus Pro 6.5.2, algorithm A, with subsequent manual transfer of significant details taken from the individual images, as necessary (_comb in the file names). Scale bars are provided in the same collection: as a separate folder for Vals camera and as additional files in the image stacks from the Nikon D7000 camera.<br><br>
DOI: 10.6084/m9.figshare.5549737
title: TW_1185_Myobiidae_RlegII_anter_60x

description: Original image stacks of Eocene Baltic amber inclusions, the type series for <br><br>Acari: Trombidiformes: Eleutherengona: Myobiidae: <br><br>Prohylomysobia erinaceophilus Sidorchuk and Bochkov in <br><br>Sidorchuk et al. 2017 Journal of Systematic Paleontology. In <br><br>Baltic amber piece, originally from the private collection of <br><br>Thomas Weiterchan, coll. # 1185 (TW 1185), housed by GPIH, <br><br>collection number 4597. Specimen number and microscopy <br><br>magnification indicated in file name.<br><br>Images are obtained with Nikon Eclipse 800 compound <br><br>microscope, mostly with 60x water immersion lens, Stacks of <br><br>images were obtained with a Nikon DS-Fi1 digital camera <br><br>(coded as "Vals" in th file names) or Nikon D7000 camera (see <br><br>filenames), color-, noise- and sharpness-enhanced with Adobe <br><br>Photoshop Lightroom 5.7.1. Combined images made with the aid <br><br>of Helicon Focus Pro 6.5.2, algorithm A, with subsequent <br><br>manual transfer of significant details taken from the <br><br>individual images, as necessary (_comb in the file names). <br><br>Scale bars are provided in the same collection: as a separate <br><br>folder for Vals camera and as additional files in the image <br><br>stacks from the Nikon D7000 camera.