cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/3nf9s7vgyc
title: Angiomotin cleavage promotes leader formation and collective cell migration

description: Wang et al. demonstrate that the cleavage of AMOT is essential for collective cell migration and tumor metastasis. The cleavage of AMOT results in spatial redistribution from apical junctions to focal adhesions, promoting leader cell formation, cell fluidization, and coherent cell migration.
DOI: 10.17632/99zvktxz62
title: Photoelasticity Color Dynamics Dataset for stress analysis applications

description: Photoelasticity is an optical technique that takes advantage of birefringence in some materials to obtain isoclinic and isochromatic fringe patterns. Which represent the direction and the difference of the principal stresses in a sample under a mechanical load. 

The changes in the photoelasticity fringe patterns contain information about the stresses presented in a sample. One of the ways to access this information without unwrapping the fringe patterns is through pixel intensity values. Which allow to reconstruct temporary signals that represent the changes of stresses produced by external stimulations such as mechanical loads or temperature changes. Today there is no dataset in the literature that contains data abourt this type of information.

To obtain this data set, sequences of 720 images of synthetic photoelasticity models with different geometries were generated and a progressive mechanical load between 0 and 4000 Newtons was applied.

The data set presented below contains two arrays called testing and training which have the following dimensions [8000,2161] and [32000,2161], respectively. The rows represent the number of pixels from which information was obteined and the columns are divided into 4 sections. The columns between 1 and 720 correspond to the RED channel, the columns between 721 and 1440 correspond to the GREEN channel and data in columns 1441 and 2160 correspond to the BLUE channel.

Finally, the data in column 2161 corresponds to the classification of each pixel. The classification is divided into 4 labels. Number 1 corresponds to pixels located in high stress zone, number 2 corresponds to pixels located in a medium stress zone, number 3 corresponds to pixels located in low stress zone, and number 4 corresponds to pixels located in a zone with the presence of residual stresses.

The stress classification criterion was based on the fringe order, orders greater than 6.5 were taken as high stresses, between 2 and 6.5 as medium stresses, and below 2 orders  were considered as low stresses. The category of residual stresses was taken based on a geometric selection of an area with the presence of residual stresses.
DOI: 10.17632/nj7956xtbm
title: 3-D Deformation Inversion for Dem glacier

description: This data is the ascending and descending results obtained by processing Sentinel 1 data based on POT-SBAS technology to invert three-dimensional glacier flow velocity. Toolbox see https://github.com/arvin1367/3-D-Deformation-Inversion
DOI: 10.6084/m9.figshare.22800449.v2
title: Investigating the Determinants of PD-L1 Therapeutic Benefit for Head and Neck Tumors by Single-cell RNA Sequencing

description: Immunotherapy, such as immune checkpoint blockade (ICB), relies on boosting the immune system to kill the cancer cell and save the cancer patients’ lives. It has demonstrated a significant improvement in cancer patients' clinical outcomes. However, the clinical effectiveness of ICB treatment is not consistent among treated patients. To explore the mechanisms behind it, it is necessary to compare the treated patients with district clinical outcomes and identify the differences between these two groups of patients. In this study, we obtained tumor samples from five patients with head and neck cancer after the treatment programmed cell death protein 1 (PD-1)/PD-L1 blockade. We highlighted the delta parts between two patient groups at the single-cell level to help enhance immunotherapy.
DOI: 10.6084/m9.figshare.24431146.v2
title: 2016 Glasser MMP1.0 Cortical Atlases

description: The group level MMP parcellation map was projected onto two standard templates using registration fusion. First subject specific volume to surface mappings were inverted to transform cortical parcellations into native T1 space. Then transformations from native T1 space to the desired template space were applied to transform parcellations into the desired spaces. Each volume represents a different participant's projection. Data from two different studies are incorporated. fmriprep 20.2.3 computed all spatial transformations. Refer to methods.txt for scanning protocols and participant details.
DOI: 10.6084/m9.figshare.5311399.v2
title: Templates

description: A list of seed templates used for generating SPARQL in LC-QuAd.
DOI: 10.15468/dl.vupjms
title: Occurrence Download

description: A dataset containing 150373 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Phalaris arundinacea L.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 150373 records from 396 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013104-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.11783661.v1
title: Electron microscopy dataset for the recognition of nanoscale ordering effects and location of nanoparticles — Dataset 1 (ordered)

description: The dataset contains Scanning Electron Microscopy (SEM) images of palladium nanoparticles attached on carbon surface in predominantly ordered fashion. A basic code example and metadata files are provided. For description, see the article: D.A. Boiko, E.O. Pentsak, V.A. Cherepanova, V.P. Ananikov, Scientific Data, 2020.
DOI: 10.6084/m9.figshare.26142922.v1
title: SurvBenchmark: comprehensive benchmarking study of survival analysis methods using both omics data and clinical data

description: Survival analysis is a branch of statistics that deals with both the tracking of time and the survival status simultaneously as the dependent response. Current comparisons of survival model performance mostly center on clinical data with classic statistical survival models, with prediction accuracy often serving as the sole metric of model performance. Moreover, survival analysis approaches for censored omics data have not been thoroughly investigated. The common approach is to binarize the survival time and perform a classification analysis.<br>Here, we develop a benchmarking design, SurvBenchmark, that evaluates a diverse collection of survival models for both clinical and omics data sets. SurvBenchmark not only focuses on classical approaches such as the Cox model but also evaluates state-of-the-art machine learning survival models. All approaches were assessed using multiple performance metrics; these include model predictability, stability, flexibility, and computational issues. Our systematic comparison design with 320 comparisons (20 methods over 16 data sets) shows that the performances of survival models vary in practice over real-world data sets and over the choice of the evaluation metric. In particular, we highlight that using multiple performance metrics is critical in providing a balanced assessment of various models. The results in our study will provide practical guidelines for translational scientists and clinicians, as well as define possible areas of investigation in both survival technique and benchmarking strategies.
DOI: 10.6084/m9.figshare.27641982.v3
title: Data from: Responses of subsoil organic carbon to climate warming and cooling is determined by microbial community rather than its molecular composition

description: Little is currently known about how long-term climate changes modulate the relationship between soil organic carbon (SOC) molecular composition, microbial community and SOC storage, and the mechanisms involved. Here, we show substantial changes in subsoil SOC in the Qinghai-Tibetan alpine grasslands over 16 years of soil warming and cooling. Warming reduced SOC content by 8.5%, while cooling increased it by 7.0%. Neither warming nor cooling affected plant- and microbial-derived molecular components. However, warming elevated fungal-to-bacterial biomass ratio (F/B) and gram-positive to gram-negative bacterial biomass ratio (G+/G-) by 15.0% and 8.6%, respectively, whereas cooling reduced them by 4.5% and 9.6%. Warming reduced SOC storage by directly increasing F/B and G+/G- and indirectly decreasing the soil carbon-to-nitrogen ratio, whereas cooling enhanced SOC storage primarily by decreasing F/B. Conventional warming experiments, which consider only climate warming and neglect cooling, may underestimate the negative impacts of warming on subsoil SOC pools in alpine grasslands.
DOI: 10.6084/m9.figshare.7476422.v1
title: FLUX-LM_1.01.xlsm

description: FLUX-LM is a macro enabled Excel spreadsheet tool for automating the analyses of 1D vertical fluxes from temperature-depth profiles.<br>FLUX-LM can estimate fluxes using a point in time temperature-depth profile and estimate of saturated thermal conductivity. In the case of layered media, thermal conductivies and layer thicknesses are required.<br>Version 1.01 has a minor change from the version released with the original Hydrological Processes article (DOI: 10.1002/hyp.11216).<br>
DOI: 10.6084/m9.figshare.c.3666502_d4.v1
title: Egyptian fruit bat vocalizations files 103

description: Recordings of Rousettus aegyptiacus social vocalizations
DOI: 10.17632/3mnyx3937w
title: Data for: Rock Slope Failure in the British Mountains

description: Files to support "Rock Slope Failure in the British Mountains" by David Jarman and Stephan Harrison
DOI: 10.17632/ccmrx8n7mk
title: Antimicrobial Resistance Dataset

description: The dataset details the antibiotic susceptibility of bacterial isolates collected from four locations in Osun State, Nigeria. These locations include Ede, Ife, Iwo, and Osu. Within each location, samples were obtained from three key areas: the butcher table (where beef dissection occurs), the concrete slab used for slaughtering animals, and the surrounding soil. The dataset records the response (sensitivity, intermediate, or resistance) of these isolates to five different antibiotics: Imipenem, Ceftazidime, Gentamycin, Augmentin, and Ciprofloxacin.
DOI: 10.6084/m9.figshare.21941681.v5
title: Resting state correlation matrices

description: ** Please see the preprocessing details in this file. **<br><br>Resting state correlation matrices from a population of 42 teenagers (23 with Inhaled Substance Abuse Disorder), age range: 13-17 years. ISAD participants were recruited by contacting a Youth Integration Center in Mexico City. The Institutional Review Board at the Hospital Infantil de Mexico Federico Gómez approved the study protocol. Informed consent was obtained from parents or guardians.The control group is formed with individuals from 1 to 19, while the rest of the individuals are ISAD cases.This is the base dataset of a study in the process of beeing published. When available, the link to the correspondig paper will be posted here.
DOI: 10.6084/m9.figshare.27158160.v1
title: Workshop_Speculative ethnography of worlds to come_2024_Brisbane_ISEA24.

description: The workshop <i>Speculative Ethnography of Worlds to Come </i>was organised in the context of the International Symposium of Electronic Arts 2024 (ISEA24), inviting artists to re-imagine urban citizenship beyond the human using a speculative ethnographic approach in ISEA24’s host city, Brisbane/Megandjin. During the workshop, we embarked on a fieldtrip to a speculative Megandjin/Brisbane where we (re)learned, observed, and wove narratives of multispecies urban ecosystems. We aimed to explore how life in Megandjin/Brisbane would transform if its urban experience ceased to be human-centered. Participants got to know speculative thinking practices, specifically in the context of (re)building multispecies connections, giving them tools to navigate through emerging environmental challenges. This workshop acted as a research-creation event that engaged participants in a transdisciplinary co-creation process using speculative thinking approaches to imagine alternative ways of urban living. Speculative ethnography stories alternative/future/parallel worlds by integrating imaginative thought, posthuman ethnography, and artistic co-creation; it represents a form of observation of worlds to come, making visible and making sense of multispecies imaginaries that (re)tell different kinds of stories about place and country (Phillips et al., 2022). This land has not always been “Brisbane,” after all; it is located on the ancestral lands of the Turrbal and Jagera peoples, known as Megandjin. In storying alternative/future/parallel worlds to come, we took into account the intricate politics of inclusion and exclusion in (speculative) worldmaking practices, embracing trans-epistemological collaborations and connections.
DOI: 10.6084/m9.figshare.28661117.v1
title: UW 12368 digital model and image set

description: UW 12368 pterosaur trackway<i>Pteraichnu</i><i>s</i><i> </i><i>stokesi</i><i> </i>typeSundance Formation, Alcova Reservoirlate Oxfordian-early Kimmeridgian, Upper Jurassic
DOI: 10.17632/hp99m2m32p
title: Supplementary Table 3

description: Supplementary Table 3 presents estimates obtained from the best model based on AIC. The table has 8034 rows and 14 columns. The column names and descriptions are given in the supplementary document Section 4.
DOI: 10.6084/m9.figshare.1378709.v4
title: Sulfide intrusion and detoxification in the seagrass Zostera marina - dataset

description: Raw data for : Sulfide intrusion and detoxification in the seagrass Zostera marina
DOI: 10.17632/jddpbzcbdt
title: Soil_heavy metal

description: Data for "Contamination characteristics, source apportionment, and risk assessment of heavy metals in the soil-crop-human system within the typical high geological background region of the Yangtze River Delta".
DOI: 10.17632/m2ccbv7rcr
title: Data for: ‘On the Road Again’: A 118 Country Panel Analysis of Gasoline and Diesel Demand

description: Road fuel (motor gasoline & diesel) real price index (base year 2005). Prices weighted by motor gasoline and diesel in final road transport consumption. Unbalanced data for 118 countries, 1978-2016. This index was used in Appendix B of Liddle, B. and H. Huntington (2020). ‘On the Road Again’: A 118 Country Panel Analysis of Gasoline and Diesel Demand. Transportation Research A: Policy and Practice. Please cite accordingly.
DOI: 10.6084/m9.figshare.12925565.v1
title: Table S3

description: Table S3. Statistical outcomes among groups. 503 metabolites were detected. 69 had a raw p value at an arbitrary cut-off level of &lt;0.10, but none met FDR cut-off criteria (p&lt;0.10). <br>
DOI: 10.6084/m9.figshare.14405351.v1
title: Supplementary Material for: Mechanical and Ablative Minimally Invasive Techniques for Male LUTS due to Benign Prostatic Obstruction: A Systematic Review according to BPH-6 Evaluation

description: The treatment of male lower urinary tract symptoms (LUTS) due to benign prostatic obstruction represents one of the major interesting aspects in urological clinical practice. Although transurethral resection of the prostate is still considered the surgical gold standard for treatment of benign prostatic hyperplasia with prostate volume &lt;80 mL, various minimally invasive surgical treatments (MITs) have been developed to overcome the limitations of the “conventional” surgery. To date, there are no validated tools to evaluate the surgical outcomes of MITs; however, in the past, BPH-6 has been used for this purpose. In this systematic review, we evaluated the efficacy and safety of MITs according to BPH-6 score system. We focused our attention on MITs based on mechanical devices (prostatic urethral lift and the temporary implantable nitinol device) and techniques for prostate ablation (image guided robotic waterjet ablation and convective water vapor energy ablation). Evidence shows that MITs are capable of leading to an improvement in LUTS without having an overwhelming impact on complications and are a valid alternative to other treatments in patients who wish to preserve their sexual function or in case of inapplicability of conventional surgery. However, comparative studies between these techniques are still missing.
DOI: 10.6084/m9.figshare.22010822.v4
title: Macroinvertebrate functional trait database of South Korean stream. Version 1.2

description: Functional traits are the result of evolution and adaptation, providing important ecological insights into how organisms interact with their environment. Aquatic macroinvertebrates, in particular, have garnered attention as biomonitoring indicators for freshwater ecosystems. This study presents a functional trait database for benthic aquatic macroinvertebrates, comprising 440 genera from five phyla (Annelida, Arthropoda, Mollusca, Nematomorpha, and Platyhelmenthes), categorized into nine traits related to life history, morphology, and habit. To account for variation in available trait information, we assigned confidence levels to each taxon and functional trait based on the level of evidence using fuzzy coding. Our database provides a comprehensive resource for understanding the ecology of benthic macroinvertebrates, serving as a valuable baseline dataset for studying their biodiversity, conservation, and biomonitoring in freshwater ecosystems.
DOI: 10.6084/m9.figshare.24152766.v1
title: Codes and Datasets for “A global assessment of the effects of solar farms on albedo, vegetation, and land surface temperature using remote sensing"

description: <b>Codes and Datasets for “A global assessment of the effects of solar farms on albedo, vegetation, and land surface temperature using remote sensing"</b>Contacts: Zhengjie Xu (xuzj@mail.bnu.edu.cn); Yan Li* (yanli.geo@gmail.com)*Correspondance: Institute of Land Surface System and Sustainable Development, Faculty of Geographical Science, Beijing Normal University, Beijing 100875, China.<b>Abstract:</b>This document describes the codes and datasets for“A global assessment of the effects of solar farms on albedo, vegetation, and land surface temperature using remote sensing”(Xu et al. 2023 Solar Energy). The data include MODIS Land Surface Temperature (LST), Enhanced Vegetation Index (EVI), albedo data, monthly air temperature and precipitation data from TERRACLIMATE, monthly solar radiation data from ERA5 and the Solar Farm(SF) database from Solar Wiki (wiki-solar.org). Please read this document for more details. The codes and datasets can be used freely under the CCY4.0 License. Users should cite the original paper of Xu et al. (2023) and the dataset (DOI: https://doi.org/10.6084/m9.figshare.24152766) when using it.<b>References</b>Xu, Z., Li, Y., Qin, Y., & Bach, E. (2024). A global assessment of the effects of solar farms on albedo, vegetation, and land surface temperature using remote sensing. Solar Energy, 268, 112198. https://doi.org/10.1016/j.solener.2023.112198
DOI: 10.6084/m9.figshare.24208719.v5
title: <b>Chromosome-level genome assembly of the common chiton, </b><b>Liolophura japonica </b><b>(Lischke, 1873)</b>

description: Chitons (Polyplacophora) are marine molluscs that can be found worldwide from cold waters to the tropics, and play important ecological roles in the environment. Nevertheless, there remains only two chiton genomes sequenced to date. The chiton Liolophura japonica (Lischke, 1873) is one of the most abundant polyplacophorans found throughout East Asia. Our PacBio HiFi reads and Omni-C sequencing data resulted in a high-quality near chromosome-level genome assembly of ~609 Mb with a scaffold N50 length of 37.34 Mb (96.4% BUSCO). A total of 28,233 genes were predicted, including 28,010 protein-coding genes. The repeat content (27.89%) was similar to the other Chitonidae species and approximately three times lower than in the genome of the Hanleyidae chiton. The genomic resources provided in this work will help to expand our understanding of the evolution of molluscs and the ecological adaptation of chitons.<br><b>Additional Links</b>BioProject PRJNA973839 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA973839Assembly GCA_032854445 https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_032854445/
DOI: 10.6084/m9.figshare.28680713.v1
title: data. Religious metacognition

description: Religious and moral metacognition involves individuals’ reflective awareness of their cognitive processes in religion and ethics. Given their fundamental role in shaping human cognition and behavior, this study aimed to investigate the predictive relationship between religious and moral metacognition on the construction of meaning in life among university students. Employing a correlational and predictive design, we sampled 207 students from the University of Birjand using a cluster random sampling method. Participants completed the Meaning in Life Questionnaire (Steger et al., 2006), the Moral Metacognition Scale (McMahon & Good, 2016), and the Religious Metacognition Scale (Salarifar, 2022). Data were analyzed using Pearson’s correlation coefficient and stepwise multiple regression. Findings revealed a significant positive association between both religious and moral metacognition and meaning in life.
DOI: 10.17632/cd2rtzm23r
title: EndoSLAM Dataset

description: EndoSLAM dataset includes standard and capsule endoscopy data from ex-vivo porcine gastrointestinal tract organs with time-synchronized, high-precision 6D ground truth pose, as well as a video sequence recorded by a clinically in-use colonoscope from a fully representative silicon colon phantom with CT scan ground truth. Besides, it includes synthetically generated data with pixel-wise depth and 6D pose ground truth which facilitates the simulation to real domain adaptation algorithms. Enjoy the data!
DOI: 10.6084/m9.figshare.20015126.v1
title: Michael dataset.dta

description: This is data for <strong>Empirical study on effect of credit constraint on technology adoption and how technology adoption influence household wealth targeting smallholder tomato farmers in Kenya </strong>
DOI: 10.6084/m9.figshare.28528733.v1
title: Discovery of coesite on the Moon

description: Asteroid impact is a common process in the Solar System. The high pressures and temperatures created by the shock events cause the target minerals transforming to more stable polymorphs, high-pressure minerals. Thus, high-pressure minerals, in turn, are widely used to constrain the shock events happened on Earth, Mars, and the Moon. Here we investigated the shock metamorphism of the lunar soils returned by the Chang’e-6 (CE6) mission from the South Pole-Aitken (SPA) basin and first reported the discovery of coesite, a high-pressure polymorph of silica, in a mare basalt fragment.
DOI: 10.6084/m9.figshare.28872308.v1
title: SRR3414636.uniq.sorted.bam

description: I'm just trying to do my omics homework just leave me alone!!!
DOI: 10.6084/m9.figshare.29053286.v1
title: Methylation SRR5836475

description: Differential methylation