cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/bt06g-dsp85
title: Hyphomonas session9 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-03-07</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 2°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
  jsa2009-03-07-85_slicer9068.jpg: unknown filament, Hyphomonas neptunium
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-07-85/rawdata/</p>09mar07a_36c_091.mrc,  Tilt Series (Pixel Size 0.316 nm), 2.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-07-85/rawdata/09mar07a_36c_091.mrc"
        > <i class="download icon"></i> Download </a></p>

        09mar07a_36c_091_full.rec,  Reconstruction (Pixel Size 1.264 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-07-85/3dimage_7035/09mar07a_36c_091_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/0h5ve-5vx76
title: Bsubtilis_ponA_sacculi

description: Bsubtilis_sacculi_ponA
description: <strong>Tilt Series Date:</strong> 2012-02-11</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> MJ007, ponA null</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> strain from Kit Pogliano at UCSD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-02-11-15/rawdata/</p>MJsacculi0021.mrc,  Tilt Series (Pixel Size 0.95 nm), 677.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-02-11-15/rawdata/MJsacculi0021.mrc"
        > <i class="download icon"></i> Download </a></p>

        MJsacculi0021_part82_9.rec,  Reconstruction (Pixel Size 1.9 nm), 877.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-02-11-15/3dimage_26175/MJsacculi0021_part82_9.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.6084/m9.figshare.30011614.v1
title: Example files from BPGA paper

description: Genotype data from HapMap Phase 3 were downloaded from the public repository (ftp: https://ftp.ncbi.nlm.nih.gov/hapmap/genotypes/hapmap3/plink_format/draft_1/; file hapmap3_r1_b36_fwd.qc.poly.tar.bz2). The archive was decompressed, and PED/MAP files were converted to binary BED/BIM/FAM and filtered to MAF ≥ 0.05 with PLINK. A random set of 10,000 autosomal SNPs were extracted and used to filter full data set to obtain a final hapmap3_r1_b36 10K sample to test BPGA functionality. Fam file was formatted according BPGA data model as “pop1pop2” were POP1 were superpopulations (AFR=African; AMR=Admixed American; EAS=East Asian; EUR=European; SAS=South Asian) and POP2 subpopulations (ASW [African ancestry in Southwest USA], CEU [Utah residents with Northern and Western European ancestry from the CEPH collection], CHB [Han Chinese in Beijing, China], CHD [Chinese in Metropolitan Denver, Colorado], GIH [Gujarati Indians in Houston, Texas], JPT [Japanese in Tokyo, Japan], LWK [Luhya in Webuye, Kenya], MEX [Mexican ancestry in Los Angeles, California], MKK [Maasai in Kinyawa, Kenya], TSI [Toscans in Italy], YRI [Yoruba in Ibadan, Nigeria]). Geographic coordinates were assigned according to each population’s geographic origin.
DOI: 10.6084/m9.figshare.30011614
title: Example files from BPGA paper

description: Genotype data from HapMap Phase 3 were downloaded from the public repository (ftp: https://ftp.ncbi.nlm.nih.gov/hapmap/genotypes/hapmap3/plink_format/draft_1/; file hapmap3_r1_b36_fwd.qc.poly.tar.bz2). The archive was decompressed, and PED/MAP files were converted to binary BED/BIM/FAM and filtered to MAF ≥ 0.05 with PLINK. A random set of 10,000 autosomal SNPs were extracted and used to filter full data set to obtain a final hapmap3_r1_b36 10K sample to test BPGA functionality. Fam file was formatted according BPGA data model as “pop1pop2” were POP1 were superpopulations (AFR=African; AMR=Admixed American; EAS=East Asian; EUR=European; SAS=South Asian) and POP2 subpopulations (ASW [African ancestry in Southwest USA], CEU [Utah residents with Northern and Western European ancestry from the CEPH collection], CHB [Han Chinese in Beijing, China], CHD [Chinese in Metropolitan Denver, Colorado], GIH [Gujarati Indians in Houston, Texas], JPT [Japanese in Tokyo, Japan], LWK [Luhya in Webuye, Kenya], MEX [Mexican ancestry in Los Angeles, California], MKK [Maasai in Kinyawa, Kenya], TSI [Toscans in Italy], YRI [Yoruba in Ibadan, Nigeria]). Geographic coordinates were assigned according to each population’s geographic origin.
DOI: 10.15468/dl.taej9s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cordylophora caspia",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007282-250827131500795/datasets/export for details.
DOI: 10.22002/q11kx-n4w58
title: Agrobacterium tumefaciens

description: C58 grown on slide
description: <strong>Tilt Series Date:</strong> 2013-10-04</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-30.0°, 30.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown on a glass slide</p>
<strong>Sample Preparation:</strong> Manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-04-2/rawdata/</p>c58_slide_2750010.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-04-2/rawdata/c58_slide_2750010.mrc"
        > <i class="download icon"></i> Download </a></p>

        c58_slide_2750010_full.rec,  Reconstruction (Pixel Size 1.56 nm), 801.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-04-2/3dimage_31919/c58_slide_2750010_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/x8ctc-8qm55
title: Wild type control

description: Raw data files of Wild type control
description: <strong>Tilt Series Date:</strong> 2009-08-01</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, PEACH</p>
<strong>Collaborators and Roles:</strong> Experiments were done by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Exponential phase NA1000 cells.</p>
<strong>Sample Preparation:</strong> 10 nm gold </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-01-128/rawdata/</p>09aug01a_noadd1a_128.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-01-128/rawdata/09aug01a_noadd1a_128.mrc"
        > <i class="download icon"></i> Download </a></p>

        09aug01a_noadd1a_128_full.rec,  Reconstruction (Pixel Size 2.4 nm), 367.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-01-128/3dimage_6345/09aug01a_noadd1a_128_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/r2jyx-wg022
title: O. tauri @ G1/S

description: O. tauri cell synchronization .
description: <strong>Tilt Series Date:</strong> 2007-09-27</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-57.0°, 57.0°), step: 1.5°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Treated with HU for 12 hours, then incubated in fresh MK for</p>
<strong>Sample Preparation:</strong> Q-foil R3.5/1, BSA treated 10nm gold, 100% humidity, -2mm offset,</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2007-09-27-3/rawdata/</p>RCC745_HU_11PM_04.mrc,  Tilt Series (Pixel Size 1.59 nm), 654.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2007-09-27-3/rawdata/RCC745_HU_11PM_04.mrc"
        > <i class="download icon"></i> Download </a></p>

        RCC745_HU_11PM_04.rec,  Reconstruction (Pixel Size 3.18 nm), 272.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2007-09-27-3/3dimage_3226/RCC745_HU_11PM_04.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.5jn9en
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cordylophora caspia",
 "Country is Ukraine",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007283-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/5gv9h-arw51
title: (D161A)MamK-GFP/wild type

description: Raw data files of (D161A)MamK-GFP/wild type
description: <strong>Tilt Series Date:</strong> 2009-11-23</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -16.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach</p>
<strong>Collaborators and Roles:</strong> Cells provided by Arash Komeili; data collected by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> (Probably) stationary phase </p>
<strong>Sample Preparation:</strong> Quantifoil R2/2, R2/1, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-33/rawdata/</p>09nov23a_D161Awt_033.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-33/rawdata/09nov23a_D161Awt_033.mrc"
        > <i class="download icon"></i> Download </a></p>

        09nov23a_D161Awt_033_full.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-33/3dimage_9691/09nov23a_D161Awt_033_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/27n1s-4gx16
title: B. subtilis AD3268

description: Raw data files of B. subtilis AD3268
description: <strong>Tilt Series Date:</strong> 2011-12-09</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> AD3268, ponA null, Alp7A</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Joe Pogliano</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in LB</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-09-56/rawdata/</p>32680056.mrc,  Tilt Series (Pixel Size 1.9 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-09-56/rawdata/32680056.mrc"
        > <i class="download icon"></i> Download </a></p>

        32680056_part.rec,  Reconstruction (Pixel Size 3.8 nm), 929.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-09-56/3dimage_16163/32680056_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.58053/mapbiomas/1aw5uh
title: Deforestation statistics for the National Hidrographic Division (DH250) - MapBiomas Brazil Collection 10

description: Area data (hectares) of deforestation for the National Geographic Division (DH250) from 1987 to 2024, based on MapBiomas Brazil Collection 10.
DOI: 10.22002/51gwm-t7w39
title: (D161A)MamK-GFP/wild type

description: Raw data files of (D161A)MamK-GFP/wild type
description: <strong>Tilt Series Date:</strong> 2009-11-23</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -16.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach</p>
<strong>Collaborators and Roles:</strong> Cells provided by Arash Komeili; data collected by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> (Probably) stationary phase </p>
<strong>Sample Preparation:</strong> Quantifoil R2/2, R2/1, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-43/rawdata/</p>09nov23a_D161Awt_043.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-43/rawdata/09nov23a_D161Awt_043.mrc"
        > <i class="download icon"></i> Download </a></p>

        09nov23a_D161Awt_043_full.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-43/3dimage_9711/09nov23a_D161Awt_043_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/b6t1s-yd582
title: Vibrio delta-CheA1

description: Vibrio cholerae strain deleted for CheA1
description: <strong>Tilt Series Date:</strong> 2014-03-04</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O1 biovar El Tor</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Ikuro Kawagishi</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grew in LB 24 hours at 30C; diluted 150 µL into 2 mL Ca-HEPES buffer and grew 16 hours at 30C</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-03-04-27/rawdata/</p>deltaA1VibrioC0027.mrc,  Tilt Series (Pixel Size 0.33 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-03-04-27/rawdata/deltaA1VibrioC0027.mrc"
        > <i class="download icon"></i> Download </a></p>

        deltaA1VibrioC0027_full.rec,  Reconstruction (Pixel Size 1.32 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-03-04-27/3dimage_39665/deltaA1VibrioC0027_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/a06mb-m1e36
title: B. subtilis 3267

description: Raw data files of B. subtilis 3267
description: <strong>Tilt Series Date:</strong> 2011-12-08</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> AD3267, ponA null, Alp7A-GFP</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Joe Pogliano</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells were grown in LB</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-08-16/rawdata/</p>3267a0016.mrc,  Tilt Series (Pixel Size 1.9 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-08-16/rawdata/3267a0016.mrc"
        > <i class="download icon"></i> Download </a></p>

        3267a0016_full.rec,  Reconstruction (Pixel Size 3.8 nm), 825.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-08-16/3dimage_16004/3267a0016_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9mknr-e5k37
title: M259Q chemoreceptor mutant

description: M259Q HAMP mutant locked in 'CheA activating state'
description: <strong>Tilt Series Date:</strong> 2010-03-21</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> John Parkinson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in TB medium with Chloramphenicol, induced with salicylate (0.6 µM) for three hours, then penicillin treated for one hour</p>
  aba2010-03-21-10_slicer9752.jpg: Escherichia coli .  bullseye
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2010-03-21-10/rawdata/</p>10mar21a_EcoliM259Q_012.st,  Tilt Series (Pixel Size 0.632 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2010-03-21-10/rawdata/10mar21a_EcoliM259Q_012.st"
        > <i class="download icon"></i> Download </a></p>

        10mar21a_EcoliM259Q_012.rec,  Reconstruction (Pixel Size 0.632 nm), 201.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2010-03-21-10/3dimage_12839/10mar21a_EcoliM259Q_012.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2hgdz-hyp40
title: B141,6/9/09,V52,delta-CTX,Kan-R

description: Raw data files of B141,6/9/09,V52,delta-CTX,Kan-R
description: <strong>Tilt Series Date:</strong> 2009-08-14</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> V52</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach, IMOD</p>
<strong>Collaborators and Roles:</strong> Cells were provided by Marek Basler at Harvard University,data collected by ZL</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Exponential phase</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-14-15/rawdata/</p>09aug14a_VCB141_030.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.0 GB  
        
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        09aug14a_VCB141_030_part.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
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