cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20761915
title: Effects of climate and land-cover change on the conservation status of gibbons

description: <strong>Abstract</strong> Species shift their distribution in response to climate and land-cover change, which may result in a spatial mismatch between currently protected areas (PAs) and priority conservation areas (PCAs). We examined the effects of climate and land-cover change on potential range gibbons and sought to identify PCAs that would conserve them effectively. We collected global gibbon occurrence points and modeled (ecological niche model) their current and potential 2050s ranges under climate change and different landcover change scenarios. We examined change in range and PA coverage between the current and future ranges of each gibbon species. We applied spatial conservation prioritization to identify the top 30% PCAs for each species. We then determined how much of the PCAs are conserved in each country within the global range of gibbons. On average 31% (SD 22) of each species’ current range was covered in PAs. Protected-area coverage of the current range of 9 species was &lt;30%. Nine species lost on average 46% (SD 29) of their potential range due to climate change. Under climate change with an optimistic land-cover change scenario (B1), 12 species lost 39% (SD 28) of their range. In a pessimistic land-cover-change scenario (A2), 15 species lost 36% (SD 28) of their range. Five species lost significantly more range under the A2 scenario than the B1 scenario (<em>p</em> = 0.01, SD 0.01), suggesting that gibbons will benefit from effective land-cover management. Protected-area coverage of future range was &lt;30% for 11 species. On average 32% (SD 25) of PCAs was covered by PAs. Indonesia contained more species and PCAs and thus has the greatest responsibility for gibbon conservation. Indonesia, India, and Myanmar need to expand their PAs to fulfill their responsibility to gibbon conservation. Our results provide a baseline for global gibbon conservation, particularly for countries lacking gibbon research capacity. <br> Dataset here: 1 Environmental variables for modeling 2 Potential range for each gibbon (Present-absence Maps) 3 Priority conservation areas (PCAs) maps 4 Gibbon records (a map; All data were obtained from different dataset online) 5 ID from gbif Some of our data were assessed by GBIF using spocc package. We provides the all id in this table. Some of these data were the same but from different resources, like gbif and inatural. User can remove the duplicated records by spocc, sf or other package. <br> Please cites this data by our publication: Yang, Li., Chen, T., Shi, K.-C., Zhang, Lu., Lwin, N., & Fan, P.-F. (2022). Effects of climate and land-cover change on the conservation status of gibbons. <em>Conservation Biology</em>, 00, e14045. https://doi.org/10.1111/cobi.14045 <br> For gbif id table: Derived dataset GBIF.org (15 December 2022) Filtered export of GBIF occurrence data https://doi.org/10.15468/dd.zm2wbc <br> We also thank Daneil Noesgaard for making the derived data from GBIF. <br>
DOI: 10.6084/m9.figshare.20761915.v3
title: Effects of climate and land-cover change on the conservation status of gibbons

description: <strong>Abstract</strong> Species shift their distribution in response to climate and land-cover change, which may result in a spatial mismatch between currently protected areas (PAs) and priority conservation areas (PCAs). We examined the effects of climate and land-cover change on potential range gibbons and sought to identify PCAs that would conserve them effectively. We collected global gibbon occurrence points and modeled (ecological niche model) their current and potential 2050s ranges under climate change and different landcover change scenarios. We examined change in range and PA coverage between the current and future ranges of each gibbon species. We applied spatial conservation prioritization to identify the top 30% PCAs for each species. We then determined how much of the PCAs are conserved in each country within the global range of gibbons. On average 31% (SD 22) of each species’ current range was covered in PAs. Protected-area coverage of the current range of 9 species was &lt;30%. Nine species lost on average 46% (SD 29) of their potential range due to climate change. Under climate change with an optimistic land-cover change scenario (B1), 12 species lost 39% (SD 28) of their range. In a pessimistic land-cover-change scenario (A2), 15 species lost 36% (SD 28) of their range. Five species lost significantly more range under the A2 scenario than the B1 scenario (<em>p</em> = 0.01, SD 0.01), suggesting that gibbons will benefit from effective land-cover management. Protected-area coverage of future range was &lt;30% for 11 species. On average 32% (SD 25) of PCAs was covered by PAs. Indonesia contained more species and PCAs and thus has the greatest responsibility for gibbon conservation. Indonesia, India, and Myanmar need to expand their PAs to fulfill their responsibility to gibbon conservation. Our results provide a baseline for global gibbon conservation, particularly for countries lacking gibbon research capacity. <br> Dataset here: 1 Environmental variables for modeling 2 Potential range for each gibbon (Present-absence Maps) 3 Priority conservation areas (PCAs) maps 4 Gibbon records (a map; All data were obtained from different dataset online) <br> Please cites this data by our publication: Now it have been accepted, we will update the cites latter <br>
DOI: 10.17909/7jap-5483
title: IUE observations of HD 144844
DOI: 10.6084/m9.figshare.21732578
title: Siniperca obscura and S. undulata genome assembly

description: We determined the genome sequences of both <em>S. undulata </em>and <em>S. obscura </em>using 10X Genomics technology and the next-generation sequencing. The assembled genomes of <em>S. undulata </em>and <em>S. obscura </em>were 744 Mb and 733 Mb respectively, With scaffold N50 are 1.34Mb and 2.75Mb. The genome completeness was evaluated using BUSCO, with complete matches of 93.7% and 93.1% in vertebrates orthoDB genes for <em>S. undulata</em> and <em>S. obscura</em> respectively. A total of 24,358 genes were annotated for <em>S. undulata</em>, with 95.8% of them having at least one hit to known genes in public databases. While in <em>S. obscura </em>the numbers were 24,360 and 93.6%.
DOI: 10.6084/m9.figshare.21732578.v1
title: Siniperca obscura and S. undulata genome assembly

description: We determined the genome sequences of both <em>S. undulata </em>and <em>S. obscura </em>using 10X Genomics technology and the next-generation sequencing. The assembled genomes of <em>S. undulata </em>and <em>S. obscura </em>were 744 Mb and 733 Mb respectively, With scaffold N50 are 1.34Mb and 2.75Mb. The genome completeness was evaluated using BUSCO, with complete matches of 93.7% and 93.1% in vertebrates orthoDB genes for <em>S. undulata</em> and <em>S. obscura</em> respectively. A total of 24,358 genes were annotated for <em>S. undulata</em>, with 95.8% of them having at least one hit to known genes in public databases. While in <em>S. obscura </em>the numbers were 24,360 and 93.6%.
DOI: 10.25377/sussex.21388416
title: Calcium Data for paper Reward modulates visual responses in the superficial superior colliculus of mice

description: Calcium imaging data used in the paper : Reward modulates visual responses in the superficial superior colliculus of mice The file contains a description of the data and NPY files arranged by animal and session. The files can be opened using Matlab or Python. Further data from this publication is linked below. The file includes pre-processed data, and the code used to analyse this pre-processed data is available at GitHub (linked below) Paper abstract The superficial layers of the superior colliculus (SC) are highly visual and receive direct input from the retina. Nonetheless, neural activity in the superficial SC (sSC) is modulated by locomotion and pupil-linked arousal. Here we show that visual responses of neurons in the sSC are additionally modulated by reward delivered prior to the visual stimulus. We trained mice to perform a visual detection task and recorded the activity of neurons in the SC using two-photon calcium imaging and electrophysiological recordings using high-density silicone probes (Neuropixels). Neurons across all layers of the SC responded to various task events, including reward delivery. However, responses to events like licking or movements did not explain the visual response modulation by reward. Electrophysiological recordings showed that most of the reward modulation occurred in the superficial rather than the deeper layers of the SC. Neurons also exhibited modulation by pupil-linked arousal, which was independent of the reward modulation. Performance of a population decoder to detect visual stimuli improved significantly by reward modulation but not by pupil-linked arousal modulation. Our results indicate that behavioural factors other than locomotion and arousal modulate visual activity in the SC.
DOI: 10.25377/sussex.21388416.v1
title: Calcium Data for paper Reward modulates visual responses in the superficial superior colliculus of mice

description: Calcium imaging data used in the paper : Reward modulates visual responses in the superficial superior colliculus of mice The file contains a description of the data and NPY files arranged by animal and session. The files can be opened using Matlab or Python. Further data from this publication is linked below. The file includes pre-processed data, and the code used to analyse this pre-processed data is available at GitHub (linked below) Paper abstract The superficial layers of the superior colliculus (SC) are highly visual and receive direct input from the retina. Nonetheless, neural activity in the superficial SC (sSC) is modulated by locomotion and pupil-linked arousal. Here we show that visual responses of neurons in the sSC are additionally modulated by reward delivered prior to the visual stimulus. We trained mice to perform a visual detection task and recorded the activity of neurons in the SC using two-photon calcium imaging and electrophysiological recordings using high-density silicone probes (Neuropixels). Neurons across all layers of the SC responded to various task events, including reward delivery. However, responses to events like licking or movements did not explain the visual response modulation by reward. Electrophysiological recordings showed that most of the reward modulation occurred in the superficial rather than the deeper layers of the SC. Neurons also exhibited modulation by pupil-linked arousal, which was independent of the reward modulation. Performance of a population decoder to detect visual stimuli improved significantly by reward modulation but not by pupil-linked arousal modulation. Our results indicate that behavioural factors other than locomotion and arousal modulate visual activity in the SC.
DOI: 10.6084/m9.figshare.21732317
title: Supplementary material

description: Matlab files and simulation data for Cooperation without punishment
DOI: 10.6084/m9.figshare.21732317.v1
title: Supplementary material

description: Matlab files and simulation data for Cooperation without punishment
DOI: 10.25377/sussex.21388413.v1
title: Electrophysiology data for paper Reward modulates visual responses in the superficial superior colliculus of mice

description: Neuropixels recordings used in the paper : Reward modulates visual responses in the superficial superior colliculus of mice The file contains a description of the data and NPY files arranged by animal and session. The files can be opened using Matlab or Python. Further data from this publication is linked below. The file includes pre-processed data, and the code used to analyse this pre-processed data is available at GitHub (linked below) <br> Paper abstract The superficial layers of the superior colliculus (SC) are highly visual and receive direct input from the retina. Nonetheless, neural activity in the superficial SC (sSC) is modulated by locomotion and pupil-linked arousal. Here we show that visual responses of neurons in the sSC are additionally modulated by reward delivered prior to the visual stimulus. We trained mice to perform a visual detection task and recorded the activity of neurons in the SC using two-photon calcium imaging and electrophysiological recordings using high-density silicone probes (Neuropixels). Neurons across all layers of the SC responded to various task events, including reward delivery. However, responses to events like licking or movements did not explain the visual response modulation by reward. Electrophysiological recordings showed that most of the reward modulation occurred in the superficial rather than the deeper layers of the SC. Neurons also exhibited modulation by pupil-linked arousal, which was independent of the reward modulation. Performance of a population decoder to detect visual stimuli improved significantly by reward modulation but not by pupil-linked arousal modulation. Our results indicate that behavioural factors other than locomotion and arousal modulate visual activity in the SC. <br>
DOI: 10.25377/sussex.21388413
title: Electrophysiology data for paper Reward modulates visual responses in the superficial superior colliculus of mice

description: Neuropixels recordings used in the paper : Reward modulates visual responses in the superficial superior colliculus of mice The file contains a description of the data and NPY files arranged by animal and session. The files can be opened using Matlab or Python. Further data from this publication is linked below. The file includes pre-processed data, and the code used to analyse this pre-processed data is available at GitHub (linked below) <br> Paper abstract The superficial layers of the superior colliculus (SC) are highly visual and receive direct input from the retina. Nonetheless, neural activity in the superficial SC (sSC) is modulated by locomotion and pupil-linked arousal. Here we show that visual responses of neurons in the sSC are additionally modulated by reward delivered prior to the visual stimulus. We trained mice to perform a visual detection task and recorded the activity of neurons in the SC using two-photon calcium imaging and electrophysiological recordings using high-density silicone probes (Neuropixels). Neurons across all layers of the SC responded to various task events, including reward delivery. However, responses to events like licking or movements did not explain the visual response modulation by reward. Electrophysiological recordings showed that most of the reward modulation occurred in the superficial rather than the deeper layers of the SC. Neurons also exhibited modulation by pupil-linked arousal, which was independent of the reward modulation. Performance of a population decoder to detect visual stimuli improved significantly by reward modulation but not by pupil-linked arousal modulation. Our results indicate that behavioural factors other than locomotion and arousal modulate visual activity in the SC. <br>
DOI: 10.6084/m9.figshare.20155127.v4
title: The redox state of incipient oceanic subduction zones: An example from the Troodos ophiolite (Cyprus)

description: Supplementary documents of a paper submitted to JGR-Solid Earth
DOI: 10.5281/zenodo.7438383
title: Test dataset for Combined Isoform Assembly pipeline

description: This is a test dataset for Carlos Alfonso-Gonzalez's "Combined Isoform Assembly" pipeline. Refer to the project github for instructions on how to run it.
DOI: 10.5281/zenodo.7442734
title: Miscible Rising Drops: Velocity and Volume

description: Volumes and velocities of 1-10uL miscible drops of water rising in glycerol and corn syrup. The .mat files contain the data, and the .m-files are used to extract the data. The experimental details can be found in Mossige, E.J., Chandran Suja, V., Walls, D.J. and Fuller, G.G., 2021. Dynamics of freely suspended drops translating through miscible environments. <em>Physics of Fluids</em>, 33(3), p.033106.
DOI: 10.5281/zenodo.7438382
title: Test dataset for Combined Isoform Assembly pipeline

description: This is a test dataset for Carlos Alfonso-Gonzalez's "Combined Isoform Assembly" pipeline. Refer to the project github for instructions on how to run it.
DOI: 10.6084/m9.figshare.21518541
title: West Nile virus lineage 2 tree files

description: West Nile virus lineage 2 tree files included in the "Supplementary Material section" of the paper entitled " Epidemiological and evolutionary analysis of West Nile virus 1 lineage 2 in Italy"
DOI: 10.6084/m9.figshare.21518541.v1
title: West Nile virus lineage 2 tree files

description: West Nile virus lineage 2 tree files included in the "Supplementary Material section" of the paper entitled " Epidemiological and evolutionary analysis of West Nile virus 1 lineage 2 in Italy"
DOI: 10.6084/m9.figshare.21732149
title: Study of microbial sulfur metabolism in a near real-time pathway through confocal Raman quantitative 3D imaging.zip

description: Raman imaging data <br>
DOI: 10.6084/m9.figshare.21732149.v1
title: Study of microbial sulfur metabolism in a near real-time pathway through confocal Raman quantitative 3D imaging.zip

description: Raman imaging data <br>
DOI: 10.6084/m9.figshare.21732548
title: Rhythmic gymnastics traditional warm-up (control group)

description: The rhythmic gymnastics traditional warm-up that the control group performed while the experimental group underwent the core and plyometric functional training. Time from 40 to 45 min.
DOI: 10.6084/m9.figshare.21732548.v1
title: Rhythmic gymnastics traditional warm-up (control group)

description: The rhythmic gymnastics traditional warm-up that the control group performed while the experimental group underwent the core and plyometric functional training. Time from 40 to 45 min.
DOI: 10.5281/zenodo.7419095
title: Supplementary Information for "Modeling the circular economy in environmentally extended input–output: A web application"

description: Supplementary Information for "Modeling the circular economy in environmentally extended input–output: A web application" Annex I: This supporting information provides the software review for native and web-based tools that could be used for Circular Economy and environmental analysis. Annex II: This supporting information provides the use-case result analysis.
DOI: 10.5281/zenodo.7419096
title: Supplementary Information for "Modeling the circular economy in environmentally extended input–output: A web application"

description: Supplementary Information for "Modeling the circular economy in environmentally extended input–output: A web application" Annex I: This supporting information provides the software review for native and web-based tools that could be used for Circular Economy and environmental analysis. Annex II: This supporting information provides the use-case result analysis.
DOI: 10.6084/m9.figshare.21732719
title: Rhythmic gymnastics traditional warm-up (control group)

description: The rhythmic gymnastics traditional warm-up that the control group performed while the experimental group underwent the core and plyometric functional training. Time from 40 to 45 min.
DOI: 10.21227/k14t-k679
title: Effectiveness of Area-to-Value Legends and Grid Lines in Contiguous Area Cartograms

description: A contiguous area cartogram is a geographic map in which the area of each region is proportional to numerical data (e.g., population size) while keeping neighboring regions connected. In this study, we investigated whether value-to-area legends (square symbols next to the values represented by the squares' areas) and grid lines aid map readers in making better area judgments. We conducted an experiment to determine the accuracy, speed, and confidence with which readers infer numerical data values for the mapped regions. We found that, when only informed about the total numerical value represented by the whole cartogram without any legend, the distribution of estimates for individual regions was centered near the true value with substantial spread. Legends with grid lines significantly reduced the spread but led to a tendency to underestimate the values. Comparing differences between regions or between cartograms revealed that legends and grid lines slowed the estimation without improving accuracy. However, participants were more likely to complete the tasks when legends and grid lines were present, particularly when the area units represented by these features could be interactively selected. We recommend considering the cartogram's use case and purpose before deciding whether to include grid lines or an interactive legend.
DOI: 10.5281/zenodo.7442738
title: Cooperation without reciprocity

description: The data is SM for the publication in Scietific Reports
DOI: 10.5281/zenodo.7442739
title: Cooperation without reciprocity

description: The data is SM for the publication in Scietific Reports
DOI: 10.5281/zenodo.7442767
title: Cooperation without reciprocity

description: The data is SM for the publication in Scietific Reports
DOI: 10.34740/kaggle/dsv/4727864
title: Mahanagar Yatayat Dataset
DOI: 10.5281/zenodo.7350323
title: Data for: Free-Breathing Myocardial T1 Mapping using Inversion-Recovery Radial FLASH and Motion-Resolved Model-Based Reconstruction (Part 2/2)

description: Magnetic Resonance Imaging measurement data used in our paper about "Free-Breathing Myocardial T1 Mapping using Inversion-Recovery Radial FLASH and Motion-Resolved Model-Based Reconstruction". The data is provided in a file format used by the BART toolbox (DOI: 10.5281/zenodo.592960)
DOI: 10.5281/zenodo.7350322
title: Data for: Free-Breathing Myocardial T1 Mapping using Inversion-Recovery Radial FLASH and Motion-Resolved Model-Based Reconstruction (Part 2/2)

description: Magnetic Resonance Imaging measurement data used in our paper about "Free-Breathing Myocardial T1 Mapping using Inversion-Recovery Radial FLASH and Motion-Resolved Model-Based Reconstruction". The data is provided in a file format used by the BART toolbox (DOI: 10.5281/zenodo.592960)
DOI: 10.5517/ccdc.csd.cc2c97yw
title: CCDC 2183638: Experimental Crystal Structure Determination

description: Related Article: Wenzeng Duan, Wenjing Liu, Houting Liu, Honghan Ji, Yanmin Huo, Huaiwei Wang, Shuwen Gong|2022|Chem.Commun.|58|13955|doi:10.1039/D2CC05399C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c9l3d
title: CCDC 2183953: Experimental Crystal Structure Determination

description: Related Article: LinLin Ren, Yonggong Wang, Yanman Huo, Xiaogang Tong, Chengfeng Xia|2022|Chem.Commun.|58|13935|doi:10.1039/D2CC05905C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cxgwn
title: CCDC 2202112: Experimental Crystal Structure Determination

description: Related Article: Wenzeng Duan, Wenjing Liu, Houting Liu, Honghan Ji, Yanmin Huo, Huaiwei Wang, Shuwen Gong|2022|Chem.Commun.|58|13955|doi:10.1039/D2CC05399C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.