cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5378861
title: High immature platelet fraction with reduced platelet count on hospital admission. Can be useful for Covid-19 diagnosis?

description: This record contains raw data related to the article: <strong>High immature platelet fraction with reduced platelet count on hospital admission. Can be useful for Covid-19 diagnosis?</strong> <strong>Short running title</strong>: Platelet parameters and Covid-19 Giovanni Introcaso, Alice Bonomi, Laura Salvini, Tiziana D’Errico, Annalisa Cattaneo, Emilio Assanelli, Silvia Stella Barbieri, Maria Luisa Biondi GI, TD, AC, MLB, Unit of Laboratory Medicine – Centro Cardiologico IRCCS Monzino – Milan Italy AB, Unit of Biostatistics– Centro Cardiologico IRCCS Monzino – Milan Italy LS, EA, Emergency Department– Centro Cardiologico IRCCS Monzino – Milan Italy SSB, Unit of Brain-Heart Axis - Centro Cardiologico IRCCS Monzino – Milan Italy Corresponding author: Giovanni Introcaso, Unit of Laboratory Medicine, Centro Cardiologico IRCCS Monzino – Milan Italy Via Parea , 20138 Milano, phone: 0039/0258002595 e-mail: giovanni.introcaso@ccfm.it <strong>Keywords: </strong>Platelet parameters, H-IPF, Covid-19, Hematological biomarkers, Emergency Department <strong>ABSTRACT</strong> <strong>Introduction</strong>: Health professions are heavily engaged facing the current threat of Sars Cov-2 (Covid-19). Although there are many diagnostic tools, an accurate and rapid laboratory procedure for diagnosing Covid-19 is recommended. We focused on platelet parameters as additional biomarkers for clinical diagnosis in patients presenting to the emergency department (ED). <strong>Materials and</strong> <strong>Methods</strong>: 561 patients from February to April, 2020 have been recruited. Patients were divided into three groups: (N=50) Covid-19 positive and (N= 21) Covid-19 negative with molecular testing, (N=490) as reference population without molecular testing. A Multiplex rRT-PCR from samples collected by nasopharyngeal swabs was performed and the hematological data collected. <strong>Results</strong>: We detected a mild anemia in Covid-19 group and lymphopenia against reference population: hemoglobin (g/dL) 13.0 (11.5-14.8) vs 13.9 (12.8-15.0) (p=0.0135); lymphocytes (10<sup>9</sup>/L) 1.24 (0.94-1.73) vs 1.99 (1.49-2.64) (p&lt;0.0001). In addition, abnormal platelet parameters as follows (Covid group versus reference population): PLT (x10<sup>9</sup>/L) 209(160-258) vs 236(193-279) (p=0.0239). IPF (%) 4.05 (2.5-5.9) vs 3.4 (2.2-4.9) (p=0.0576); H-IPF (%) 1.25 (0.8-2.2) vs 0.95 (0.6-1.5) (p=0.0171) were identified. In particular, Covid positive group had a high H-IPF/IPF Ratio compared to reference population [0.32 (0.29-0.36) vs 0.29 (0.26-0.32), respectively, (p=0.0003)]. Finally, a PLT difference of nearly 50x10<sup>9</sup>/L between pre/post Covid-19 sampling for each patient was found (N=42) (p=0.0194). <strong>Conclusions</strong>: Covid-19 group results highlighted higher IPF and H-IPF values, with increased H-IPF/IPF Ratio, associated to PLT count reduction. These findings shall be adopted for a timely diagnosis of patients upon hospital admission.
DOI: 10.5281/zenodo.5378860
title: High immature platelet fraction with reduced platelet count on hospital admission. Can be useful for Covid-19 diagnosis?

description: This record contains raw data related to the article: <strong>High immature platelet fraction with reduced platelet count on hospital admission. Can be useful for Covid-19 diagnosis?</strong> <strong>Short running title</strong>: Platelet parameters and Covid-19 Giovanni Introcaso, Alice Bonomi, Laura Salvini, Tiziana D’Errico, Annalisa Cattaneo, Emilio Assanelli, Silvia Stella Barbieri, Maria Luisa Biondi GI, TD, AC, MLB, Unit of Laboratory Medicine – Centro Cardiologico IRCCS Monzino – Milan Italy AB, Unit of Biostatistics– Centro Cardiologico IRCCS Monzino – Milan Italy LS, EA, Emergency Department– Centro Cardiologico IRCCS Monzino – Milan Italy SSB, Unit of Brain-Heart Axis - Centro Cardiologico IRCCS Monzino – Milan Italy Corresponding author: Giovanni Introcaso, Unit of Laboratory Medicine, Centro Cardiologico IRCCS Monzino – Milan Italy Via Parea , 20138 Milano, phone: 0039/0258002595 e-mail: giovanni.introcaso@ccfm.it <strong>Keywords: </strong>Platelet parameters, H-IPF, Covid-19, Hematological biomarkers, Emergency Department <strong>ABSTRACT</strong> <strong>Introduction</strong>: Health professions are heavily engaged facing the current threat of Sars Cov-2 (Covid-19). Although there are many diagnostic tools, an accurate and rapid laboratory procedure for diagnosing Covid-19 is recommended. We focused on platelet parameters as additional biomarkers for clinical diagnosis in patients presenting to the emergency department (ED). <strong>Materials and</strong> <strong>Methods</strong>: 561 patients from February to April, 2020 have been recruited. Patients were divided into three groups: (N=50) Covid-19 positive and (N= 21) Covid-19 negative with molecular testing, (N=490) as reference population without molecular testing. A Multiplex rRT-PCR from samples collected by nasopharyngeal swabs was performed and the hematological data collected. <strong>Results</strong>: We detected a mild anemia in Covid-19 group and lymphopenia against reference population: hemoglobin (g/dL) 13.0 (11.5-14.8) vs 13.9 (12.8-15.0) (p=0.0135); lymphocytes (10<sup>9</sup>/L) 1.24 (0.94-1.73) vs 1.99 (1.49-2.64) (p&lt;0.0001). In addition, abnormal platelet parameters as follows (Covid group versus reference population): PLT (x10<sup>9</sup>/L) 209(160-258) vs 236(193-279) (p=0.0239). IPF (%) 4.05 (2.5-5.9) vs 3.4 (2.2-4.9) (p=0.0576); H-IPF (%) 1.25 (0.8-2.2) vs 0.95 (0.6-1.5) (p=0.0171) were identified. In particular, Covid positive group had a high H-IPF/IPF Ratio compared to reference population [0.32 (0.29-0.36) vs 0.29 (0.26-0.32), respectively, (p=0.0003)]. Finally, a PLT difference of nearly 50x10<sup>9</sup>/L between pre/post Covid-19 sampling for each patient was found (N=42) (p=0.0194). <strong>Conclusions</strong>: Covid-19 group results highlighted higher IPF and H-IPF values, with increased H-IPF/IPF Ratio, associated to PLT count reduction. These findings shall be adopted for a timely diagnosis of patients upon hospital admission.
DOI: 10.25493/d0ns-8wr
title: GapMap Frontal to Temporal II (v11.3)

description: This dataset contains the “GapMap Frontal to Temporal II" in the individual, single subject template of the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. In order to provide whole-brain coverage for the cortex within the Julich-Brain Atlas, yet uncharted parts of the frontal cortex have been combined to the brain region “GapMap Frontal to Temporal II”. The distributions were modeled so that probabilistic gap maps were computed in analogy to other maps of the Julich-Brain Atlas. The probabilistic map of “GapMap Frontal to Temporal II” is provided in NifTi format for each hemisphere in the reference space. The Julich-Brain atlas relies on a modular, flexible and adaptive framework containing workflows to create the probabilistic brain maps for these structures. New maps are continuously replacing parts of “GapMap Frontal to Temporal II” with progress in mapping. The most probable delineation of GapMap Frontal to Temporal II derived from the calculation of a maximum probability map of all currently released Julich-Brain brain structures can be found here: Amunts et al. (2021) [Data set, v2.9] [DOI: 10.25493/VSMK-H94](https://doi.org/10.25493/VSMK-H94)
DOI: 10.15161/oar.it/74062
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.6084/m9.figshare.16558338
title: Supplementary Material for: Urine Alpha-1-Microglobulin Levels and Acute Kidney Injury, Mortality, and Cardiovascular Events following Cardiac Surgery

description: <b><i>Introduction:</i></b> Urine alpha-1-microglobulin (Uα1m) elevations signal proximal tubule dysfunction. In ambulatory settings, higher Uα1m is associated with acute kidney injury (AKI), progressive chronic kidney disease (CKD), cardiovascular (CV) events, and mortality. We investigated the associations of pre- and postoperative Uα1m concentrations with adverse outcomes after cardiac surgery. <b><i>Methods:</i></b> In 1,464 adults undergoing cardiac surgery in the prospective multicenter Translational Research Investigating Biomarker Endpoints for Acute Kidney Injury (TRIBE-AKI) cohort, we measured the pre-and postoperative Uα1m concentrations and calculated the changes from pre- to postoperative concentrations. Outcomes were postoperative AKI during index hospitalization and longitudinal risks for CKD incidence and progression, CV events, and all-cause mortality after discharge. We analyzed Uα1m continuously and categorically by tertiles using multivariable logistic regression and Cox proportional hazards regression adjusted for demographics, surgery characteristics, comorbidities, baseline estimated glomerular filtration rate, urine albumin, and urine creatinine. <b><i>Results:</i></b> There were 230 AKI events during cardiac surgery hospitalization; during median 6.7 years of follow-up, there were 212 cases of incident CKD, 54 cases of CKD progression, 269 CV events, and 459 deaths. Each 2-fold higher concentration of preoperative Uα1m was independently associated with AKI (adjusted odds ratio [aOR] = 1.36, 95% confidence interval 1.14–1.62), CKD progression (adjusted hazard ratio [aHR] = 1.46, 1.04–2.05), and all-cause mortality (aHR = 1.19, 1.06–1.33) but not with incident CKD (aHR = 1.21, 0.96–1.51) or CV events (aHR = 1.01, 0.86–1.19). Postoperative Uα1m was not associated with AKI (aOR per 2-fold higher = 1.07, 0.93–1.22), CKD incidence (aHR = 0.90, 0.79–1.03) or progression (aHR = 0.79, 0.56–1.11), CV events (aHR = 1.06, 0.94–1.19), and mortality (aHR = 1.01, 0.92–1.11). <b><i>Conclusion:</i></b> Preoperative Uα1m concentrations may identify patients at high risk of AKI and other adverse events after cardiac surgery, but postoperative Uα1m concentrations do not appear to be informative.
DOI: 10.6084/m9.figshare.16558359
title: Supplementary Material for: Less-Invasive Surfactant Administration for Neonatal Respiratory Distress Syndrome: A Consensus Guideline

description: <b><i>Introduction:</i></b> Less-invasive surfactant administration (LISA) is a method of surfactant delivery to preterm infants for treating respiratory distress syndrome (RDS), which can reduce the composite risk of death or bronchopulmonary dysplasia and the time on mechanical ventilation. <b><i>Methods:</i></b> A systematic literature search of studies published up to April 2021 on minimally invasive catheter surfactant delivery in preterm infants with RDS was conducted. Based on these studies, with parental feedback sought via an online questionnaire, 9 UK-based specialists in neonatal respiratory disease developed their consensus for implementing LISA. Recommendations were developed following a modified, iterative Delphi process using a questionnaire employing a 9-point Likert scale and an a priori level of agreement/disagreement. <b><i>Results:</i></b> Successful implementation of LISA can be achieved by training the multidisciplinary team and following locally agreed guidance. From the time of the decision to administer surfactant, LISA should take &lt;30 min. The comfort of the baby and requirements to maintain non-invasive respiratory support are important. While many infants can be managed without requiring additional sedation/analgesia, fentanyl along with atropine may be considered. Parents should be provided with sufficient information about medication side effects and involved in treatment discussions. <b><i>Conclusion:</i></b> LISA has the potential to improve outcomes for preterm infants with RDS and can be introduced as a safe and effective part of UK-based neonatal care with appropriate training.
DOI: 10.6084/m9.figshare.16558359.v1
title: Supplementary Material for: Less-Invasive Surfactant Administration for Neonatal Respiratory Distress Syndrome: A Consensus Guideline

description: <b><i>Introduction:</i></b> Less-invasive surfactant administration (LISA) is a method of surfactant delivery to preterm infants for treating respiratory distress syndrome (RDS), which can reduce the composite risk of death or bronchopulmonary dysplasia and the time on mechanical ventilation. <b><i>Methods:</i></b> A systematic literature search of studies published up to April 2021 on minimally invasive catheter surfactant delivery in preterm infants with RDS was conducted. Based on these studies, with parental feedback sought via an online questionnaire, 9 UK-based specialists in neonatal respiratory disease developed their consensus for implementing LISA. Recommendations were developed following a modified, iterative Delphi process using a questionnaire employing a 9-point Likert scale and an a priori level of agreement/disagreement. <b><i>Results:</i></b> Successful implementation of LISA can be achieved by training the multidisciplinary team and following locally agreed guidance. From the time of the decision to administer surfactant, LISA should take &lt;30 min. The comfort of the baby and requirements to maintain non-invasive respiratory support are important. While many infants can be managed without requiring additional sedation/analgesia, fentanyl along with atropine may be considered. Parents should be provided with sufficient information about medication side effects and involved in treatment discussions. <b><i>Conclusion:</i></b> LISA has the potential to improve outcomes for preterm infants with RDS and can be introduced as a safe and effective part of UK-based neonatal care with appropriate training.
DOI: 10.5281/zenodo.5380258
title: A prospective, multicentre study of the investigation and management of hyponatraemia after subarachnoid haemorrhage: Supplementary materials

description: Supplementary materials to accompany main published manuscript.
DOI: 10.5281/zenodo.5362361
title: A prospective, multicentre study of the investigation and management of hyponatraemia after subarachnoid haemorrhage: Supplementary materials

description: Supplementary materials to accompany main published manuscript.
DOI: 10.5281/zenodo.5376904
title: Replication Package for "Trust Enhancement Issues in Program Repair"

description: This is our replication artifact for our work on "Trust Enhancement Issues in Program Repair". It is organized in two parts: the artifacts for our <strong>developer survey</strong>, and the artifacts for our <strong>empirical assessment</strong> of state-of-the-art automated program repair (APR) techniques. <strong>1. Survey Artifacts</strong> The <code>survey</code> folder includes: <code>Survey_Form.pdf</code> -- It shows the PDF version of the web form of our survey. Note that we redacted one video link that may reveal our identity for the double-anonymous review. <code>Study_Results.pdf</code> -- It shows a summary of the questions and responses. <code>Codebooks.xlsx</code> -- It shows all created codebooks. <code>CodedResults.xlsx</code> -- It shows the responses for all questions and the corresponding coding we applied during our analysis. Additionally, it includes plots for all responses and also the plots that are included in our paper. <strong>2. Experiment Artifacts</strong> The <code>experiment</code> folder includes: <code>tools.md</code> -- It lists and describes the APR techniques that we used in our experiments. <code>Results.xlsx</code> -- Contains the results of the experiments for each tool we considered, configuration details, and all the data from the ManyBugs benchmark. <code>protocols/</code> -- This folder includes the analysis protocols, which describe for each tool "how" we extracted the values for our evaluation metrics (see Table 3 in our paper). <code>results/</code> -- Contains the log files and relevant outputs for all tools and configurations. In particular, it includes the generated patches. <code>subjects/</code> -- Contains the subjects taken from the ManyBugs benchmark. For our experiments, we made some changes to the instrumentations, test-ids, etc. The file <code>meta-data.json</code> states the configurations, relevant test cases, etc.
DOI: 10.48370/ofd/j7sdsr/gvgdhq
title: HMW_Lamium_maculatum_L._H_7299.jpg

description: :unav
DOI: 10.48370/ofd/j7sdsr
title: Jasnota plamista (Lamium maculatum L.), 7299

description: Herbarium
DOI: 10.48370/ofd/7k4mz8/0rqnj7
title: HMW_Lamium_maculatum_L._H_8545.jpg

description: :unav
DOI: 10.48370/ofd/7k4mz8
title: Jasnota plamista (Lamium maculatum L.), 8545

description: Herbarium
DOI: 10.48370/ofd/whuwua/8vfxaz
title: HMW_Lamium_maculatum_L._H_9129.jpg

description: :unav
DOI: 10.48370/ofd/whuwua
title: Jasnota plamista (Lamium maculatum L.), 9129

description: Herbarium
DOI: 10.48370/ofd/om8o8k/mykcyo
title: HMW_Lamium_maculatum_L._H_9342.jpg

description: :unav
DOI: 10.48370/ofd/om8o8k
title: Jasnota plamista (Lamium maculatum L.), 9342

description: Herbarium
DOI: 10.48370/ofd/yianfu/idkqag
title: HMW_Lamium_purpureum_L._H_1105.jpg

description: :unav
DOI: 10.48370/ofd/yianfu
title: Jasnota purpurowa (Lamium purpureum L.), 1105

description: Herbarium
DOI: 10.48370/ofd/j1o3wa/h23jee
title: HMW_Lamium_purpureum_L._H_1106.jpg

description: :unav
DOI: 10.48370/ofd/j1o3wa
title: Jasnota purpurowa (Lamium purpureum L.), 1106

description: Herbarium
DOI: 10.48370/ofd/fyacz1/1yi0q4
title: HMW_Lamium_purpureum_L._H_9350.jpg

description: :unav
DOI: 10.48370/ofd/fyacz1
title: Jasnota purpurowa (Lamium purpureum L.), 9350

description: Herbarium
DOI: 10.48370/ofd/hbttyp/5thgbq
title: HMW_Lamium_amplexicaule_L._H_1395.jpg

description: :unav
DOI: 10.48370/ofd/hbttyp
title: Jasnota różowa (Lamium amplexicaule L.), 1395

description: Herbarium
DOI: 10.48370/ofd/e2daub/ohmyg0
title: HMW_Lamium_amplexicaule_L._H_6539.jpg

description: :unav
DOI: 10.48370/ofd/e2daub
title: Jasnota różowa (Lamium amplexicaule L.), 6539

description: Herbarium
DOI: 10.6084/m9.figshare.6871127
title: Model neuron I-V and spike time data (3x200 implementations)

description: Voltage responses of 600 model neurons under current step stimulation (IV data files). Phenotypes are the following: regular firing (Reg), delayed firing (Del) and stuttering type (Stu). The 3 ZIP files contain the voltage waveforms of 3x200 model neurons.<br>
DOI: 10.6084/m9.figshare.6871127.v1
title: Model neuron I-V and spike time data (3x200 implementations)

description: Voltage responses of 600 model neurons under current step stimulation (IV data files). Phenotypes are the following: regular firing (Reg), delayed firing (Del) and stuttering type (Stu). The 3 ZIP files contain the voltage waveforms of 3x200 model neurons.<br>
DOI: 10.5517/ccdc.csd.cc28nxql
title: CCDC 2105480: Experimental Crystal Structure Determination

description: Related Article: Wenbo Li, Reyhangul Ruzi, Keyume Ablajan, Zulpiya Ghalipt|2017|Tetrahedron|73|164|doi:10.1016/j.tet.2016.11.067
DOI: 10.5517/ccdc.csd.cc28nxrm
title: CCDC 2105481: Experimental Crystal Structure Determination

description: Related Article: Wenbo Li, Reyhangul Ruzi, Keyume Ablajan, Zulpiya Ghalipt|2017|Tetrahedron|73|164|doi:10.1016/j.tet.2016.11.067
DOI: 10.25493/xxk2-mee
title: Probabilistic cytoarchitectonic map of Area Ia1 (Insula) (v5.1)

description: This dataset contains cytoarchitectonic probability maps of the Area Ia1 (Insula) in the single subject template of the MNI (“Colin 27”) and the MNI ICBM 152 reference space, as part of the Julich-Brain atlas. The area was identified using cytoarchitectonic analysis on cell-body-stained histological sections in both hemispheres of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The maps show the probability to belong to the Area Ia1 (Insula) for each voxel of the reference spaces. Data is provided in the NifTi format. The Julich-Brain atlas relies on a modular, flexible and adaptive framework containing workflows to create probabilistic brain maps. Note that methodological improvements and integration of new brain structures may lead to small deviations in earlier released datasets. Delineations of the Area Ia1 (Insula) derived from the calculation of a maximum probability map of all currently released Julich-Brain brain structures can be found here: Amunts et al. (2021) [Data set, v2.9] [DOI: 10.25493/VSMK-H94](https://doi.org/10.25493/VSMK-H94)
DOI: 10.7277/5tm8-5r56
title: Chloride diffusion coefficient of concrete by RCM at 28 days

description: This database collects the chloride ion diffusion coefficient measured by RCM method (including the method adopted by the Nordic standard NT Build 492, the IBAC method of Germany's Anchen University of technology, as well as the methods adopted by China's GB/T 50082-2009 and JTG/T B07-01-2006); The curing method is standard curing.
DOI: 10.7277/v7a7-gm78
title: Carbonation depth

description: The database collects the carbonation depth of ordinary concrete and concrete with single or mixed mineral admixtures at different times and depths. The test methods include rapid carbonation, indoor natural carbonation and outdoor natural carbonation.
DOI: 10.5281/zenodo.5380617
title: Exact solution and Majorana zero mode generation on a Kitaev chain composed out of noisy qubits

description: Attached are the data sets in forms of python pickle files from the following submission https://arxiv.org/abs/2108.07235 Abstract: Majorana zero modes were predicted to exist as edge states of a physical system called the Kitaev chain. Such zero modes should host particles that are their own antiparticles and could be used as a basis for a qubit that is to large extent immune to noise - the topological qubit. However, all attempts to prove their existence gave inconclusive results. Here, I experimentally show that Majorana zero modes do in fact exist on a Kitaev chain composed out of 3 noisy qubits on a publicly available quantum computer. The signature of Majorana zero modes is a degeneracy with the ground state which is not lifted by noise of the quantum computer. I also confirm that Majorana zero modes have a number of theoretically predicted features: a well-defined parity with switches at specific points and a non-conserved particle number. Furthermore, I show that Majorana zero modes favour long-range Majorana pairing at low chemical potential and short-range pairing at large values of the chemical potential. The results presented here are a most comprehensive set of validations ever conducted towards confirming the existence of Majorana zero modes in nature. I foresee that the findings presented here would allow any user with an internet connection to perform experiments with Majorana zero modes. Furthermore, the noisy intermediate scale quantum computing community can start building topological processors composed out of contemporary noisy qubits.
DOI: 10.6084/m9.figshare.14811255
title: SvelocityModel.xyz

description: Shear-wave velocity model in central Japan island estimated by adjoint waveform tomography.
DOI: 10.6084/m9.figshare.16536171
title: Model data and electrophysiological recordings for Szabó et al. PLoS Comp Biol 2021 paper

description: Model data and electrophysiological recordings are as 4-byte floating point real numbers (single). The electrophysiological data were acquired by the data acquisition program DASYLab 11.<br>