cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zenn26
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Desulfurivibrio alkaliphilus A"
 ]
}

 The dataset includes 52 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021681-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jt9aes
title: Occurrence Download

description: A dataset containing 225 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Lista de observaciones de carnívoros terrestres en las Illes Balears"
 ]
}

 The dataset includes 225 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021682-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.20102894.v1
title: Comparative metabolomic study of three clones of <i>Eucommia ulmoides</i> wood

description: It is important to reveal the differences in the metabolites of different clones of <i>Eucommia</i> wood to explore the beneficial components of <i>Eucommia</i> wood and the selection of <i>Eucommia</i> wood. In this study, an extensive targeted metabolomic analysis was conducted on three different clones of <i>Eucommia</i> wood, Huazhong 12 <i>Eucommia</i> (HZ), Cili <i>Eucommia</i> (CL), and Miye <i>Eucommia</i> (MY), using UPLC-EI-MS/MS analysis. The results show that the <i>Eucommia</i> wood contains phenolic acids, lipids, amino acids and derivatives, organic acids, flavonoids, nucleotides and derivatives, terpenoids, lignans and coumarins, alkaloids, tannins, and other classes with a total of 854 metabolites. Among them, HZ and CL, HZ and MY, and MY and CL contain 99, 115, and 154 substantially different metabolites, respectively, enriched in 83, 128, and 199 metabolic pathways, mainly enriched in the metabolic pathways and biosynthesis of secondary metabolites. The metabolites in HZ with a relatively high content were sexangularetin-3-O-glucoside-7-O-rhamnoside, narcissin*, quercetin-3-O-sambubioside*, and quercetin-3-O-apiosyl(1→2)galactoside*; the metabolites in MY with a relatively high content were L-lysine and L-ornithine. The relatively more abundant metabolite in CL is 1,3,5-benzenetriol. The results of the study not only reveal that different clones of <i>Eucommia</i> wood have different metabolite components. This may provide not only different health functions to <i>Eucommia</i> wood, but also theoretical and technical support for the selection and breeding of good <i>Eucommia</i> species for timber and the enhancement of added value.
DOI: 10.6084/m9.figshare.12123756
title: Hysteresis curves data from Enhanced magnetic performance of aligned wires assembled from nanoparticles: from nanoscale to macroscale

description: Data for hysteresis curves shown in Figure 5 and Figure 6.
DOI: 10.6084/m9.figshare.22724288
title: Additional file 6 of Caloric restriction remodels the hepatic chromatin landscape and bile acid metabolism by modulating the gut microbiota

description: Additional file 6. Differentially identified BAs in livers (AL vs CR).
DOI: 10.6084/m9.figshare.20098745.v1
title: Additional file 2 of First case report of complete paternal isodisomy of chromosome 10 harbouring a novel variant in COL17A1 that causes junctional epidermolysis bullosa intermediate

description: Additional file 2. Table of identified variants annotated as pathogenic/likely pathogenic for the trio.
DOI: 10.6084/m9.figshare.12123759
title: Hysteresis curves data from Enhanced magnetic performance of aligned wires assembled from nanoparticles: from nanoscale to macroscale

description: Data for hysteresis curves shown in Figure 5, Figure 6, and Figure 7.
DOI: 10.6084/m9.figshare.22724276
title: Additional file 3 of Caloric restriction remodels the hepatic chromatin landscape and bile acid metabolism by modulating the gut microbiota

description: Additional file 3. Top20 GO enrichment analysis of hepatic DEGs.
DOI: 10.6084/m9.figshare.22724282
title: Additional file 5 of Caloric restriction remodels the hepatic chromatin landscape and bile acid metabolism by modulating the gut microbiota

description: Additional file 5. Differentially expressed metabolites in livers.
DOI: 10.6084/m9.figshare.22724273
title: Additional file 2 of Caloric restriction remodels the hepatic chromatin landscape and bile acid metabolism by modulating the gut microbiota

description: Additional file 2. Differential expressed genes in livers (AL vs CR).
DOI: 10.6084/m9.figshare.8045201.v1
title: Additional file 10: of Identification of new loci for salt tolerance in soybean by high-resolution genome-wide association mapping

description: Table S4. A core set of 305 soybean plant introductions (PIs) selected from the USDA Soybean Germplasm Collection. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.22724291.v1
title: Additional file 7 of Caloric restriction remodels the hepatic chromatin landscape and bile acid metabolism by modulating the gut microbiota

description: Additional file 7. Differentially identified BAs in livers (HFD vs HFDR).
DOI: 10.6084/m9.figshare.22724279
title: Additional file 4 of Caloric restriction remodels the hepatic chromatin landscape and bile acid metabolism by modulating the gut microbiota

description: Additional file 4. Top20 KEGG pathway analysis of hepatic DEGs.
DOI: 10.6084/m9.figshare.22724282.v1
title: Additional file 5 of Caloric restriction remodels the hepatic chromatin landscape and bile acid metabolism by modulating the gut microbiota

description: Additional file 5. Differentially expressed metabolites in livers.
DOI: 10.6084/m9.figshare.21151427
title: Additional file 1 of Factors that dynamically affect provincial incidences of catastrophic health expenditure among middle-aged and elderly Chinese population-transition of disease financial risk protection from global to local

description: Additional file 1: Appendix Table 1. Reference of indicators selection. Appendix Table 2. Comparison of GTWR model without geographical subdivisions and that with it. Appendix Figure 1. Flowchart of data process in this study.
DOI: 10.6084/m9.figshare.22724273.v1
title: Additional file 2 of Caloric restriction remodels the hepatic chromatin landscape and bile acid metabolism by modulating the gut microbiota

description: Additional file 2. Differential expressed genes in livers (AL vs CR).
DOI: 10.6084/m9.figshare.22724276.v1
title: Additional file 3 of Caloric restriction remodels the hepatic chromatin landscape and bile acid metabolism by modulating the gut microbiota

description: Additional file 3. Top20 GO enrichment analysis of hepatic DEGs.
DOI: 10.6084/m9.figshare.22724288.v1
title: Additional file 6 of Caloric restriction remodels the hepatic chromatin landscape and bile acid metabolism by modulating the gut microbiota

description: Additional file 6. Differentially identified BAs in livers (AL vs CR).
DOI: 10.6084/m9.figshare.22724291
title: Additional file 7 of Caloric restriction remodels the hepatic chromatin landscape and bile acid metabolism by modulating the gut microbiota

description: Additional file 7. Differentially identified BAs in livers (HFD vs HFDR).
DOI: 10.6084/m9.figshare.12123756.v1
title: Hysteresis curves data from Enhanced magnetic performance of aligned wires assembled from nanoparticles: from nanoscale to macroscale

description: Data for hysteresis curves shown in Figure 5 and Figure 6.
DOI: 10.6084/m9.figshare.21151339
title: Additional file 4 of Key factors for differential drought tolerance in two contrasting wild materials of Artemisia wellbyi identified using comparative transcriptomics

description: Additional file 4: Table S4. Statistics of assembly.
DOI: 10.6084/m9.figshare.21151354
title: Additional file 9 of Key factors for differential drought tolerance in two contrasting wild materials of Artemisia wellbyi identified using comparative transcriptomics

description: Additional file 9: Table S9. Receptor kinases related DEGs significantly regulated by drought.
DOI: 10.6084/m9.figshare.21151345.v1
title: Additional file 6 of Key factors for differential drought tolerance in two contrasting wild materials of Artemisia wellbyi identified using comparative transcriptomics

description: Additional file 6: Table S6 DEGs involved in protein degradation in the drought-tolerant A.wellbyi under drought stress.
DOI: 10.6084/m9.figshare.21151306
title: Additional file 13 of Key factors for differential drought tolerance in two contrasting wild materials of Artemisia wellbyi identified using comparative transcriptomics

description: Additional file 13: Table S13. DEGs involved in starch and sucrose metabolism in sensitive material.
DOI: 10.6084/m9.figshare.19579476.v1
title: Diverse triterpene skeletons are derived from the expansion and divergent evolution of 2,3-oxidosqualene cyclases in plants

description: Triterpenoids are one of the largest groups of secondary metabolites and exhibit diverse structures, which are derived from C30 skeletons that are biosynthesized <i>via</i> the isoprenoid pathway by cyclization of 2,3-oxidosqualene. Triterpenoids have a wide range of biological activities, and are used in functional foods, drugs, and as industrial materials. Due to the low content levels in their native plants and limited feasibility and efficiency of chemical synthesis, heterologous biosynthesis of triterpenoids is the most promising strategy. Herein, we classified 121 triterpene alcohols/ketones according to their conformation and ring numbers, among which 51 skeletons have been experimentally characterized as the products of oxidosqualene cyclases (OSCs). Interestingly, 24 skeletons that have not been reported from nature source were generated by OSCs in heterologous expression. Comprehensive evolutionary analysis of the identified 152 OSCs from 75 species in 25 plant orders show that several pentacyclic triterpene synthases repeatedly originated in multiple plant lineages. Comparative analysis of OSC catalytic reaction revealed that stabilization of intermediate cations, steric hindrance, and conformation of active center amino acid residues are primary factors affecting triterpene formation. Optimization of OSC could be achieved by changing of side-chain orientations of key residues. Recently, methods, such as rationally design of pathways, regulation of metabolic flow, compartmentalization engineering, etc., were introduced in improving chassis for the biosynthesis of triterpenoids. We expect that extensive study of natural variation of large number of OSCs and catalytical mechanism will provide basis for production of high level of triterpenoids by application of synthetic biology strategies.
DOI: 10.6084/m9.figshare.21151309.v1
title: Additional file 14 of Key factors for differential drought tolerance in two contrasting wild materials of Artemisia wellbyi identified using comparative transcriptomics

description: Additional file 14: Table S14. Differentially expressed MAPKs in drought-tolerant A.wellbyi.
DOI: 10.6084/m9.figshare.19579476
title: Diverse triterpene skeletons are derived from the expansion and divergent evolution of 2,3-oxidosqualene cyclases in plants

description: Triterpenoids are one of the largest groups of secondary metabolites and exhibit diverse structures, which are derived from C30 skeletons that are biosynthesized <i>via</i> the isoprenoid pathway by cyclization of 2,3-oxidosqualene. Triterpenoids have a wide range of biological activities, and are used in functional foods, drugs, and as industrial materials. Due to the low content levels in their native plants and limited feasibility and efficiency of chemical synthesis, heterologous biosynthesis of triterpenoids is the most promising strategy. Herein, we classified 121 triterpene alcohols/ketones according to their conformation and ring numbers, among which 51 skeletons have been experimentally characterized as the products of oxidosqualene cyclases (OSCs). Interestingly, 24 skeletons that have not been reported from nature source were generated by OSCs in heterologous expression. Comprehensive evolutionary analysis of the identified 152 OSCs from 75 species in 25 plant orders show that several pentacyclic triterpene synthases repeatedly originated in multiple plant lineages. Comparative analysis of OSC catalytic reaction revealed that stabilization of intermediate cations, steric hindrance, and conformation of active center amino acid residues are primary factors affecting triterpene formation. Optimization of OSC could be achieved by changing of side-chain orientations of key residues. Recently, methods, such as rationally design of pathways, regulation of metabolic flow, compartmentalization engineering, etc., were introduced in improving chassis for the biosynthesis of triterpenoids. We expect that extensive study of natural variation of large number of OSCs and catalytical mechanism will provide basis for production of high level of triterpenoids by application of synthetic biology strategies.
DOI: 10.6084/m9.figshare.21151321
title: Additional file 17 of Key factors for differential drought tolerance in two contrasting wild materials of Artemisia wellbyi identified using comparative transcriptomics

description: Additional file 17: Table S17. Interactions between HSP70 and ubiquitination-related genes in the drought-tolerant A.wellbyi under drought stress.
DOI: 10.6084/m9.figshare.21151333
title: Additional file 2 of Key factors for differential drought tolerance in two contrasting wild materials of Artemisia wellbyi identified using comparative transcriptomics

description: Additional file 2: Table S2. Statistics of filtered data.
DOI: 10.5281/zenodo.6941106
title: Geoglossum cookeanum SPAdes preassembly

description: .
DOI: 10.5281/zenodo.6941105
title: Geoglossum cookeanum SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.20227332
title: Microfibers microbiome in the Mediterranean Sea

description: 16S amplicon sequencing of prokaryotes associated to floating microfibers sampled at the Mediterranean Sea. <br> This folder contains information on microbial diversity of floating microfibers (MFs) at the Mediterranean Sea, published at PLOS ONE “Vibrio spp and other potential pathogenic bacteria associated to microfibers in the North-Western Mediterranean Sea” (Pedrotti et al., 2022). <br> 1. DNA sequences are given on file " MFs Microbiome_FAS file.fas". 2. Taxonomy and Statistics are given on file " MFs microbiome_OTU table and Statistics". 3. Graphical visualization of the abundance of groups per sample can be accessed on Krona Platform 4. Ilustration of Microfibers in different sizes and colors can be found on file "Microphotograph of microfibers-MFs- from the Mediterranean Sea". <br>
DOI: 10.6084/m9.figshare.20227332.v2
title: Microfibers microbiome in the Mediterranean Sea

description: 16S amplicon sequencing of prokaryotes associated to floating microfibers sampled at the Mediterranean Sea. <br> This folder contains information on microbial diversity of floating microfibers (MFs) at the Mediterranean Sea, published at PLOS ONE “Vibrio spp and other potential pathogenic bacteria associated to microfibers in the North-Western Mediterranean Sea” (Pedrotti et al., 2022). <br> 1. DNA sequences are given on file " MFs Microbiome_FAS file.fas". 2. Taxonomy and Statistics are given on file " MFs microbiome_OTU table and Statistics". 3. Graphical visualization of the abundance of groups per sample can be accessed on Krona Platform 4. Ilustration of Microfibers in different sizes and colors can be found on file "Microphotograph of microfibers-MFs- from the Mediterranean Sea". <br>
DOI: 10.6084/m9.figshare.20227332.v1
title: Microfibers microbiome in the Mediterranean Sea

description: 16S amplicon sequencing of prokaryotes associated to floating microfibers sampled at the Mediterranean Sea
DOI: 10.5281/zenodo.6941124
title: MoMA Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.5281/zenodo.6941123
title: MoMA Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.6084/m9.figshare.20403372
title: Full Dataset

description: Full dataset used in OIS article "If you Build, They Might Not Come: The Effects of Socioeconomic Predictors on Library Activity and Funding."
DOI: 10.5281/zenodo.6835651
title: Visualization Data for Topic Modeling in the Field of Biotechnology (Bachelor's Thesis)

description: Visualization Data for Topic Modeling in the Field of Biotechnology (Bachelor's Thesis at UPM)
DOI: 10.5281/zenodo.6835650
title: Visualization Data for Topic Modeling in the Field of Biotechnology (Bachelor's Thesis)

description: Visualization Data for Topic Modeling in the Field of Biotechnology (Bachelor's Thesis at UPM)
DOI: 10.25625/wvmlz5/ypztqb
title: README

description: :unav
DOI: 10.25625/wvmlz5
title: Replication Data for: "Computational studies of enantioselective ring closure reactions", Wieland Mäde

description: Raw data for the Bachelor work of Wieland Mäde titled "Computational studies of enantioselective ring closure reactions" carried out in the CCBC group in the Summer of 2022
DOI: 10.5281/zenodo.6941173
title: Self-generated LBNP data

description: Raw and analyzed data from self-generated LBNP testing. Further details in the README.
DOI: 10.5281/zenodo.6941172
title: Self-generated LBNP data

description: Raw and analyzed data from self-generated LBNP testing. Further details in the README.
DOI: 10.15156/bio/sh1708918.08fu
title: SH1708918.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1708919.08fu
title: SH1708919.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh344465.07fu
title: SH344465.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh344466.07fu
title: SH344466.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1708920.08fu
title: SH1708920.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.