cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gmevbr
title: Occurrence Download

description: A dataset containing 172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Upeneus tragula Richardson, 1846",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 172 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032249-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3603854_d2
title: Additional file 3: of Epidermal growth factor receptor is expressed and active in a subset of acute myeloid leukemia

description: Peptide phosphorylation data for Fig.Â 1c. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3603746_d5
title: Additional file 3: Table S2. of JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators

description: Gene ontology analysis of up- and down-regulated genes in JMJ704 T-DNA mutant detected with RNA-seq analysis. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3603746_d3
title: Additional file 2: Table S1. of JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators

description: The differenced expressed genes in jmj704 mutant plants compared with the wild type. (XLS 108 kb)
DOI: 10.6084/m9.figshare.c.3603746_d2
title: Additional file 5: Table S3. of JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators

description: Nucleotide sequences of primers used in this study. (XLSX 12 kb)
DOI: 10.15468/dl.4thzy7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Upeneus francisi Randall & Guézé, 1992",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032250-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3603281_d16
title: Additional file 7: Table S4. of Transcriptome profiling and comparison of maize ear heterosis during the spikelet and floret differentiation stages

description: Cross-comparison of enriched GO terms of additive and non-additive expressed genes in the spikelet and floret differentiation stages. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3603281_d15
title: Additional file 5: Dataset S1. of Transcriptome profiling and comparison of maize ear heterosis during the spikelet and floret differentiation stages

description: The differential gene expression patterns in the spikelet differentiation stage. (XLSX 3916 kb)
DOI: 10.6084/m9.figshare.c.3603080_d6
title: Additional file 5: Table S2. of Porcine methionine sulfoxide reductase B3: molecular cloning, tissue-specific expression profiles, and polymorphisms associated with ear size in Sus scrofa

description: The molecular weights and isoelectric points of multiple phosphorylation states. (XLS 23Â kb)
DOI: 10.15468/dl.mk3uc8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mullus japonicus Houttuyn, 1782",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032251-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3602990_d1
title: Additional file 2: of Efficacy and safety assessment of acupuncture and nimodipine to treat mild cognitive impairment after cerebral infarction: a randomized controlled trial

description: Patients' MoCA score. (XLSX 90 kb)
DOI: 10.6084/m9.figshare.c.3602945_d5
title: Additional file 4: of Correlation of an epigenetic mitotic clock with cancer risk

description: Gene set enrichment analysis results (in Excel table format) of the 385 PCGT CpGs that make up epiTOC. Columns label the biological term, number of genes present in the term, number and corresponding fraction of genes present on the bead array, the number in the overlap between term and the genes mapped by the 385 PCGT CpGs, the odds ratio (OR), the Fisher test one-tailed P value of enrichment, the adjusted P value (Benjaminiâ  Hochberg adjusted) and the overlapping gene symbols. (XLS 1403Â kb)
DOI: 10.6084/m9.figshare.c.3602945_d6
title: Additional file 6: of Correlation of an epigenetic mitotic clock with cancer risk

description: EstEpiTOC.R. An executable R script function to allow estimation of the pcgtAge score in independent samples. (R 1Â kb)
DOI: 10.6084/m9.figshare.c.3602945_d4
title: Additional file 1: of Correlation of an epigenetic mitotic clock with cancer risk

description: Blood reference DNA methylation data matrix in Excel format. Detailed legend in file. (XLS 85Â kb)
DOI: 10.6084/m9.figshare.c.3602909_d11
title: Additional file 9: of 
                     De novo transcriptome sequencing and comprehensive analysis of the drought-responsive genes in the desert plant Cynanchum komarovii

description: The repeat unit, length, location and primer information for EST-SSRs. (XLSX 4088 kb)
DOI: 10.6084/m9.figshare.c.3602945_d3
title: Additional file 2: of Correlation of an epigenetic mitotic clock with cancer risk

description: The 385 PCGT CpGs that make up epiTOC. Detailed legend in file. (XLS 205Â kb)
DOI: 10.6084/m9.figshare.c.3602909_d10
title: Additional file 10: of 
                     De novo transcriptome sequencing and comprehensive analysis of the drought-responsive genes in the desert plant Cynanchum komarovii

description: Primer information for qRT-PCR analysis. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3602945_d1
title: Additional file 5: of Correlation of an epigenetic mitotic clock with cancer risk

description: epiTOCcpgs.RData. An R object data file containing the 450Â k probe IDs of the 385 PCGT CpGs that make up epiTOC. (RDATA 1Â kb)
DOI: 10.6084/m9.figshare.c.3602909_d8
title: Additional file 2: of 
                     De novo transcriptome sequencing and comprehensive analysis of the drought-responsive genes in the desert plant Cynanchum komarovii

description: Summary of the KEGG classifications of assembled unigenes. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3602660_d15
title: Additional file 10: Table S6. of A multi-omic analysis of human naĂŻve CD4+ T cells

description: A list of genes displaying allele specific expression. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3602660_d13
title: Additional file 4: Table S1. of A multi-omic analysis of human naĂŻve CD4+ T cells

description: A list of genes expressed in naĂŻve CD4+ T cells. (XLSX 403 kb)
DOI: 10.6084/m9.figshare.c.3602660_d12
title: Additional file 21: Table S10. of A multi-omic analysis of human naĂŻve CD4+ T cells

description: A list of regulatory methylation sites derived from TCGA data. (XLSX 418 kb)
DOI: 10.6084/m9.figshare.c.3602714_d4
title: Additional file 3: of High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice

description: Table S5. Annotated function of differentially expressed genes identified between RIL segregant pools. (XLSX 170 kb)
DOI: 10.6084/m9.figshare.c.3602660_d11
title: Additional file 13: Table S7. of A multi-omic analysis of human naĂŻve CD4+ T cells

description: A list of peptides supporting novel exons or exon extensions identified using proteogenomics strategy. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3602714_d3
title: Additional file 2: of High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice

description: Table S4. Annotated function of differentially expressed genes identified between parents. (XLSX 1232 kb)
DOI: 10.6084/m9.figshare.c.3602660_d8
title: Additional file 22: Table S11. of A multi-omic analysis of human naĂŻve CD4+ T cells

description: Pathways enriched from Gene Set Analysis of genes correlating with TCGA dataset 1 or dataset 2. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3602660_d6
title: Additional file 15:Table S9. of A multi-omic analysis of human naĂŻve CD4+ T cells

description: A list of annotated pseudogenes that encode proteins in naĂŻve CD4+ T cells with the corresponding peptide evidence from proteomics data. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3602531_d1
title: Additional file 1: Table S1. of Quantitative proteomic analysis of cell envelope preparations under iron starvation stress in Aeromonas hydrophila

description: Identification and quantification results using dimethyl labeling based quantitative proteomics. (XLSX 834 kb)
DOI: 10.6084/m9.figshare.c.3602504_d2
title: Additional file 3: Figure S2. of The associations between proprotein convertase subtilisin/kexin type 9 E670G polymorphism and the risk of coronary artery disease and serum lipid levels: a meta-analysis

description: Funnel plot for study of the associations between PCSK9 E670G polymorphism and the risk of CAD and lipid levels. Each point represents a separate study for the indicated association. Logor (y axis): the log of OR; s. e. of logor (x axis): the standard error of log (OR). (S2A: for CAD; S2B: for TC levels; S2C: for TG levels; S2D: for HDL-C levels; S2E: for LDL-C levels). (ZIP 108 kb)
DOI: 10.6084/m9.figshare.c.3602504_d3
title: Additional file 2: Figure S1. of The associations between proprotein convertase subtilisin/kexin type 9 E670G polymorphism and the risk of coronary artery disease and serum lipid levels: a meta-analysis

description: Analysis of influence of individual study on the pooled estimate in dominant model for CAD risk and lipid levels. Open circle indicates that the pooled odds ratio, given named study is omitted. Horizontal lines represent the 95Â % confidence intervals. (S1A: for CAD; S1B: for TC levels; S1C: for TG levels; S1D: for HDL-C levels; S1E: for LDL-C levels). (ZIP 385 kb)
DOI: 10.6084/m9.figshare.c.3602465_d1
title: Additional file 1: Table S1. of Transfer RNA detection by small RNA deep sequencing and disease association with myelodysplastic syndromes

description: Sample description. Table S2. Phenotype and alignment results for all samples. Table S3. Differential expression analysis between MDS and control samples. Table S4. Differential expression analysis between pre and post treatment. Table S5. Nucleotide sequences of the tRNAs described in this paper. (ODS 152Â kb)
DOI: 10.15468/dl.utp437
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pristipomoides sieboldii (Bleeker, 1855)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 70 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032252-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3602405_d4
title: Additional file 3: Table S3. of 
                     In silico region of difference (RD) analysis of Mycobacterium tuberculosis complex from sequence reads using RD-Analyzer

description: Raw data and outputs from RD-Analyzer and characteristics of WGS from Mtb lineage and sublineages and other species of MTC retrieved from previous studies and public databases. (XLS 224 kb)
DOI: 10.15468/dl.9hj4js
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cheracebus purinus (Thomas, 1927)"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032254-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3602405_d2
title: Additional file 4: Table S4. of 
                     In silico region of difference (RD) analysis of Mycobacterium tuberculosis complex from sequence reads using RD-Analyzer

description: Outputs from RD-Analyzer in the validation set of Mtb isolates. (XLS 107 kb)
DOI: 10.6084/m9.figshare.c.3602405_d3
title: Additional file 1: Table S1. of 
                     In silico region of difference (RD) analysis of Mycobacterium tuberculosis complex from sequence reads using RD-Analyzer

description: Informative RD for MTC analysis and its characteristics. (XLS 25 kb)
DOI: 10.6084/m9.figshare.c.3602405_d1
title: Additional file 2: Table S2. of 
                     In silico region of difference (RD) analysis of Mycobacterium tuberculosis complex from sequence reads using RD-Analyzer

description: Prediction rule for MTC species and Mtb lineages/sublineages. (XLS 25 kb)
DOI: 10.6084/m9.figshare.c.3602387_d2
title: Additional file 1: of COMAN: a web server for comprehensive metatranscriptomics analysis

description: The R script to visualise the co-expression network. The input file is generated by COMAN co-expression analysis. (R 8 kb)
DOI: 10.6084/m9.figshare.c.3602357_d1
title: Additional file 1: of Continuous weeklong measurements of indoor particle levels in a Minnesota Tribal Casino Resort

description: Supplementary dataset. (XLSX 739 kb)
DOI: 10.6084/m9.figshare.c.3602330_d6
title: Additional file 2 of QUADrATiC: scalable gene expression connectivity mapping for repurposing FDA-approved therapeutics

description: The specification of the basic REST API supported by QUADrATiC. (XLSX 9.76 kb)
DOI: 10.15468/dl.pypuab
title: Occurrence Download

description: A dataset containing 12312 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Cyanocorax sanblasianus (Lafresnaye, 1842)"
 ]
}

 The dataset includes 12312 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032253-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25810/80dg-nq51
title: FIRED Finland Nov 2000 - July 2024

description: This is event-level polygons for the fire event delineation (FIRED) product for FINLAND from November 2000  to July 2024. It is derived from the MODIS MCD64A1 burned area product (see https://lpdaac.usgs.gov/products/mcd64a1v061/ for more details). The MCD64A1 is a monthly raster grid of estimated burned dates. Firedpy (https://github.com/earthlab/firedpy) is an algorithm that converts these rasters into events by stacking the entire time series into a spatial-temporal data cube, then uses an algorithm to assign event identification numbers to pixels that fit into the same 3-dimensional spatial temporal window. This particular dataset was created using a spatial parameter of 1 pixels and 5 days. Daily polygons are included and the event identification numbers are the same for both files, but the event-level product has only single polygons for each entire event, while the daily product has separate polygons for each date per event. See the associated paper for more details on the methods and more:

Balch, J.K.; St. Denis, L.A.; Mahood, A.L.; Mietkiewicz, N.P.; Williams, T.M.; McGlinchy, J.; Cook, M.C. FIRED (Fire Events Delineation): An Open, Flexible Algorithm and Database of US Fire Events Derived from the MODIS Burned Area Product (2001–2019). Remote Sens. 2020, 12, 3498. https://doi.org/10.3390/rs12213498
DOI: 10.6084/m9.figshare.c.3602216_d5
title: Additional file 7: of Genomic copy number variation association study in Caucasian patients with nonsyndromic cryptorchidism

description: CNV calls for Group 2 cases passed sample QC. Each column in Additional file 7 represents CNV location, SNPs numbers contained within the CNV, the length of the CNV, copy number (cn) of the CNV call, sample id, the starting marker identifier and the ending marker identifier in the CNV, and confidence score in PennCNV calling. (XLSX 534Â kb)
DOI: 10.6084/m9.figshare.c.3602231_d3
title: MOESM3 of Genetic variants of DNA repair genes predict the survival of patients with esophageal squamous cell cancer receiving platinum-based adjuvant chemotherapy

description: Additional file 3: Table S3. The original clinical and genotype data.
DOI: 10.6084/m9.figshare.c.3602243_d1
title: MOESM1 of Development and evaluation of enzyme-linked immunosorbent assay of nucleic acid sequence-based amplification for diagnosis of invasive aspergillosis

description: Additional file 1. Additional table.
DOI: 10.6084/m9.figshare.c.3602216_d3
title: Additional file 8: of Genomic copy number variation association study in Caucasian patients with nonsyndromic cryptorchidism

description: CNV calls for Group 2 controls passed sample QC. Each column in Additional file 8 represents CNV location, SNPs numbers contained within the CNV, the length of the CNV, copy number (cn) of the CNV call, sample id, the starting marker identifier and the ending marker identifier in the CNV, and confidence score in PennCNV calling. (XLSX 1952Â kb)
DOI: 10.6084/m9.figshare.c.3602222_d2
title: Additional file 2: of Induction Chemotherapy Followed by Radiotherapy versus Concurrent Chemoradiotherapy in elderly patients with nasopharyngeal carcinoma: finding from a propensity-matched analysis

description: List of elderly patients with nasopharyngeal carcinoma in our study. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3602216_d2
title: Additional file 6: of Genomic copy number variation association study in Caucasian patients with nonsyndromic cryptorchidism

description: CNV calls for Group 1 controls passed sample QC. Each column in Additional file 6 represents CNV location, SNPs numbers contained within the CNV, the length of the CNV, copy number (cn) of the CNV call, sample id, the starting marker identifier and the ending marker identifier in the CNV, and confidence score in PennCNV calling. (XLSX 1544Â kb)
DOI: 10.6084/m9.figshare.c.3602156_d10
title: Additional file 10: Table S8. of Transcriptome profiling analysis for two Tibetan wild barley genotypes in responses to low nitrogen

description: Gene accession numbers and sequences of 1469 DEGs. (XLS 2369Â kb)
DOI: 10.6084/m9.figshare.c.3602156_d8
title: Additional file 3: Table S2. of Transcriptome profiling analysis for two Tibetan wild barley genotypes in responses to low nitrogen

description: Summary of mapping reads of the RNA-Seq. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3602156_d9
title: Additional file 4: Table S3. of Transcriptome profiling analysis for two Tibetan wild barley genotypes in responses to low nitrogen

description: The FPKM value of 1469 DEGs in XZ149 and XZ56. (XLSX 464Â kb)
DOI: 10.6084/m9.figshare.c.3602156_d6
title: Additional file 7: Table S6. of Transcriptome profiling analysis for two Tibetan wild barley genotypes in responses to low nitrogen

description: DEGs encoding kinases under low N stress in XZ149 and XZ56. (XLSX 14Â kb)
DOI: 10.15468/dl.adhgmm
title: Occurrence Download

description: A dataset containing 61511 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Cyanocorax yncas (Boddaert, 1783)"
 ]
}

 The dataset includes 61511 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032255-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q2j5c2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chaetopterus sieboldii Bleeker, 1855",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032256-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3601973_d4
title: Additional file 2: of Small GTP-binding protein PdRanBP regulates vascular tissue development in poplar

description: The amino acid sequences of P. deltoides PdRanBP, and the RanBP sequences from other plants. (TXT 6 kb)
DOI: 10.6084/m9.figshare.c.3601949_d3
title: Additional file 2: of DiSNPindel: improved intra-individual SNP and InDel detection in direct amplicon sequencing of a diploid

description: Test Data. (ZIP 9355Â kb)
DOI: 10.6084/m9.figshare.c.3601949_d2
title: Additional file 3: Table S1. of DiSNPindel: improved intra-individual SNP and InDel detection in direct amplicon sequencing of a diploid

description: Found and missed SNPs out of the 66 CAPS-associated intra-individual SNPs from 62 single traces [22] by four software packages DiSNPindel, novoSNP [8], Mutation Surveyor ( http://www.softgenetics.com/mutationSurveyor.html ) and PolyPhred [6, 9]. Table S2. True, false positive and missed SNPs by four software packages DiSNPindel, novoSNP [8], Mutation Surveyor ( http://www.softgenetics.com/mutationSurveyor.html ) and PolyPhred [6, 9] for 50 amplicons previously directly sequenced [22]. Those sequencing traces with no detection results shown in novoSNP and/or unmatched with reference sequence in Mutation Surveyor were excluded. Table S3. InDels detected by four software packages DiSNPindel, novoSNP [8], Mutation Surveyor ( http://www.softgenetics.com/mutationSurveyor.html ), PolyPhred [6, 9] and PrimeIndel [10] for 77 previously directly sequenced amplicons that contained within-individual variation in simple sequence repeats [23]. (XLS 399Â kb)
DOI: 10.6084/m9.figshare.c.3601709_d5
title: Additional file 1: of RNA sequencing analysis to capture the transcriptome landscape during skin ulceration syndrome progression in sea cucumber Apostichopus japonicus

description: Significantly enriched GO terms in DEGs shown by the up-regulated expression models (xls). (XLS 52 kb)
DOI: 10.6084/m9.figshare.c.3601730_d1
title: Additional file 1: of Inpatient care burden due to cancers in Anhui, China: a cross-sectional household survey

description: Raw dataset of inpatient cancer care costs and related variables studied. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3601709_d1
title: Additional file 2: of RNA sequencing analysis to capture the transcriptome landscape during skin ulceration syndrome progression in sea cucumber Apostichopus japonicus

description: Significantly enriched pathways among the DEGs revealed by the up-regulated expression models (xls). (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3601541_d1
title: Additional file 2 of A high-density genetic map for anchoring genome sequences and identifying QTLs associated with dwarf vine in pumpkin (Cucurbita maxima Duch.)

description: Table S1. Segregation distortion markers. Table S2. Phenotypic variation of vine length of Rimu, SQ026, F1 and F2 population. Table S3. Predicted genes in the genome region of the major QTL qCmB2 on scaffold S5. Table S4. Vine phenotypes and genotypes of gene Cma_004516 in F2:3 families. Table S5. Vine phenotypes and genotypes of gene Cma_004516 in the second F2 population. Table S6. Varieties and their vine phenotypes and genotypes of gene Cma_004516. Table S7. Primers used in the present study. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3601520_d4
title: Additional file 5: Table S3. of High light stress triggers distinct proteomic responses in the marine diatom Thalassiosira pseudonana

description: The significantly differentially expressed proteins regulated by high light (HL) (Fold change &gt; 1.5 or
DOI: 10.6084/m9.figshare.c.3601520_d2
title: Additional file 3: Table S2. of High light stress triggers distinct proteomic responses in the marine diatom Thalassiosira pseudonana

description: List of proteins identified with by MS/MS from the T. pseudonana extract with a minimum of 1 peptides at &gt;95% confidence in high light (HL)-treated experiment. (XLS 1082 kb)