cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p96l2gb0
title: Organic contaminants, including hormones, pesticides, pharmaceuticals and other endocrine disrupting compounds, and estrogenicity data in select surface water samples as well as organic contaminants in bed sediment samples collected in Chesapeake Bay watershed in parts of Maryland, Pennsylvania, and West Virginia, 2012-2018 (ver. 2.0, August 2020)

description: These data represent surface water and bed sediment samples analyzed for a variety of organic compounds. The samples were collected in streams and rivers in the Chesapeake Bay watershed from 2012-2017. Sites were located in Maryland, Pennsylvania, and West Virginia. Surface water samples were collected from 25 sites and analyzed for estrogenicity and an extensive suite of organic contaminants including hormones, pharmaceuticals, wastewater indicators, pesticides, phytoestrogens, and mycotoxins. Bed sediment samples were collected from 20 sites and analyzed for a suite of organic contaminants including hormones, wastewater indicators, pesticides, and organohalogens. Bed sediment was also analyzed for total organic carbon. Data also include replicate and blank quality assurance samples. This U.S. Geological Survey (USGS) data release contains daily-mean streamflow and water-quality data in the Chesapeake Bay watershed ranging from 2012 to 2017 (beginning and end dates may vary).
DOI: 10.5281/zenodo.7147543
title: Crustal Imaging of Portugal Mainland Using Magnetotelluric data

description: Edi files of 21 MT stations acquired during the project MAG-GIC (PTDC/CTA-GEO/31744/2017) funded by national funds through FCT (Foundation for Science and Technology, I.P.)
DOI: 10.5281/zenodo.7226896
title: UAV-based DEM across the Peiku Co-Gyirong Rift normal faults, southernmost Tibetan

description: These data are the unmanned aerial vehicle (UAV) topography surveying data (.tif) of several offset fluvial terraces/fans and lake shorelines across the Peiku Co-Gyirong Rift normal faults. The UAV data were acquired by ~100-200-m-high aerial photographs using a DJI (Dajiang Innovations Science and Technology Co., Ltd.) Phantom 4 RTK. High-resolution digital elevation models (DEM) were produced by Agisoft Metashape Professional software.
DOI: 10.5281/zenodo.7297960
title: Observation, simulation and sensitivity test data of peroxy radical in October 2018

description: Observation, simulation and sensitivity test data of peroxy radical in October 2018
DOI: 10.5281/zenodo.7950009
title: Hydrogeological model for the island of Norderney (Germany)

description: This record provides a hydrogeological model for the island of Norderney (Germany). The dataset is associated with the data paper "Development of a three-dimensional hydrogeological model for the island of Norderney (Germany) using GemPy" published in <em>Geoscience Data Journal </em>(https://doi.org/10.1002/gdj3.208). <strong>Brief summary of the record contents</strong> <strong>figures.zip </strong>contains figures presented in the manuscript and corresponding Python scripts to create them. <strong>hydrgeological_model_3D_voxel.zip </strong>contains the GemPy model output data and parameter setting as well as discretization informations. <strong>hydrogeological_model_layer_raster.zip </strong>contains GeoTIFF files of the layer bases and thicknesses of the hydrogeological model. <strong>tables.zip </strong>contains csv-files for tables present in the supplementary information <strong>workflow.zip</strong> contains the entire processing workflow of the primary data and model development as well as creation. <strong>Required software</strong> Python (Version 3.9.13), R (Version 4.2.1), GemPy (Version 2.2.11), QGIS (Version 3.20.1). <strong>Changes to v1.2.1</strong> Included folder 'tables/' <strong>Changes to v1.2.0</strong> Correction of a typo in script for Figure 4 in folder 'figures/' Adaption of figure scripts to journal requirements regarding file types <strong>Changes to v1.1.0</strong> New figures added in 'figures/'. Fig5, Fig7, and FigS1 (other figures renamed accordingly) new folder 'tables/' with added Tables TabS1 and TabS2 technical correction in README file (qL/T to qL/C) additional data congruence analysis, with additional script 's03d_check_hgsm_3d_congruence.py' and folder 'congruence_check/' in 'workflow/C_hgsm_nor_3d/'
description: Project funding was provided by the Federal Ministry of Education and Research of Germany (BMBF project WAKOS, funding reference number 01LR2003E).
DOI: 10.5281/zenodo.8093239
title: Dataset of Geomagnetic Storm Forcasting with CEEMDAN-CWT

description: Dataset of geomagnetic storm forcasting with CEEMDAN-CWT, associated with manuscript 《A new method for predicting non-recurrent geomagnetic storms》. <strong>Previous Work</strong> <strong>Ye, Q., Wang, C., He, F., Xue, B., & Zhang, X. (2022). The frequency-domain characterization of Cosmic Ray Intensity variations before Forbush decreases associated with geomagnetic storms. Space Weather, 20, e2021SW002863. https://doi.org/10.1029/2021SW002863</strong>
DOI: 10.5281/zenodo.8161947
title: Paired field measurements of suspended-sediment concentration, turbidity, acoustic backscatter, and particle size compiled from various estuaries in the United States and Australia

description: Field measurements of suspended-sediment concentration, turbidity, acoustic backscatter, and particle size are compiled from various estuaries in the United States and Australia to investigate the utility of combining optical and acoustic backscatter measurements for the estimation of suspended-sediment concentration under changes in floc particle size and density. Theory, analysis, and interpretation of the data is available in Livsey et al (2023). Data collected from the Chesapeake Bay, US were compiled from Fall et al (2022). Data collected on the Brisbane River were collected by Livsey et al (2022). Data collected for all other locations were compiled from Livsey et al (2022). Data collected by Fall et al (2022) utilized a LISST 100x. Data collected by Livsey et al (2022, 2023) utilized a LISST 200x. Data files for each instrument are provided. Funding for this research was provided by an Advance Queensland Industry Research Fellowship, Queensland University of Technology, and Queensland Department of Environment and Science. References Fall, Kelsey A., Massey, Grace M., and Friedrichs, Carl T., (2020). The importance of organic content to fractal floc properties in estuarine surface waters, insights from video, LISST, and pump sampling: Supporting data. Data. William & Mary. https://doi.org/10.25773/7gbc-794 6739 Livsey, D., Turner, R., Grace, P., and Crosswell, & Andy Steven. (2022). Field and laboratory measurements of suspended-sediment particle size and concentration from nine rivers draining to the Great Barrier Reef (1.0). Data. Zenodo. https://doi.org/10.5281/zenodo.6788303 Livsey, D., Turner, R., and Grace, P. (2023). Combining optical and acoustic backscatter measurements for monitoring of fine suspended-sediment concentration under changes in particle size and density. Water Resources Research. https://doi.org/10.1029/2022WR033982
description: {"references": ["Fall, Kelsey A., Massey, Grace M.,\u00a0and Friedrichs, Carl T., (2020). The importance of organic content to fractal floc properties in estuarine surface waters, insights from video, LISST, and pump sampling: Supporting data. Data. William & Mary. https://doi.org/10.25773/7gbc-794 6739", "Livsey, D., Turner, R., Grace, P., and Crosswell, & Andy Steven. (2022). Field and laboratory measurements of suspended-sediment particle size and concentration from nine rivers draining to the Great Barrier Reef (1.0). Data. Zenodo. https://doi.org/10.5281/zenodo.6788303", "Livsey, D., Turner, R., and Grace, P. (2023). Combining optical and acoustic backscatter measurements for monitoring of fine suspended-sediment concentration under changes in particle size and density. Water Resources Research. https://doi.org/10.1029/2022WR033982"]}
DOI: 10.6084/m9.figshare.14671965
title: adhd2019

description: GWAS summary statistics from the Psychiatric Genomics Consortium (PGC)
DOI: 10.6084/m9.figshare.20073005
title: Resources for "A longitudinal survey in the wild reveals major shifts in fish host microbiota after parasite infection"

description: Here are provided necessary datasets and codes to replicate the analyses done in the study entitled “A longitudinal survey in the wild reveals major shifts in fish host microbiota after parasite infection” Mathieu-Bégné Eglantine<sup>1</sup>*, Blanchet Simon<sup>2,3</sup>, Rey Olivier<sup>4</sup>, Toulza Eve<sup>4</sup>, Veyssière Charlotte<sup>2</sup>, Manzi Sophie<sup>2</sup>, Lefort Maxim<sup>3</sup>, Scelsi Orlane<sup>3</sup> and Loot Géraldine<sup>2,5</sup> 1 Department of Environmental Sciences, Zoology, University of Basel, Vesalgasse 1, 4051, Basel, Switzerland 2 Université Paul Sabatier, Centre National pour la Recherche Scientifique, Ecole Nationale de Formation Agronomique; Laboratoire Evolution et Diversité Biologique (UMR5174), 118 route de Narbonne, F-31062 Toulouse, France 3 Université Paul Sabatier, Centre National pour la Recherche Scientifique; Station d’Ecologie Théorique et Expérimentale (UAR2029), 2 route du CNRS, F-09200 Moulis, France 4 Laboratoire Interactions-Hôtes-Pathogènes-Environnements (UMR5244), Univ. Montpellier, CNRS, Ifremer, Univ. Perpignan Via Domitia, 58 Avenue Paul Alduy, F-66860, Perpignan, France 5 Institut Universitaire de France, Paris, France
DOI: 10.6084/m9.figshare.22849361.v1
title: Result of ETA and PVL PCR and Cefoxitime Screening of Clinical Isolates

description: This data were obtained from Adam Malik General Hospital. We took this sample in a blind manner to obtain a cross sectional epidemiological data thus patient demographics charactheristics would not be available
DOI: 10.7488/ds/3809
title: Topographic Response to Horizontal Advection in Normal Fault-Bound Mountain Ranges

description: This dataset relates to work presented in the article Hoskins A., Attal M., Mudd S., Castillo M., 'Topographic Response to Horizontal Advection in Normal Fault-Bound Mountain Ranges' (in submission).
DOI: 10.7488/ds/3821
title: Ocean surface drifter and drifter simulation data

description: Many practical problems in fluid dynamics demand an empirical approach, where statistics estimated from data inform understanding and modelling. In this context data-driven probabilistic modelling offers an elegant alternative to ad hoc estimation procedures. Probabilistic models are useful as emulators, but also offer an attractive means of estimating particular statistics of interest. In this paradigm one can rely on probabilistic scoring rules for model comparison and validation. Stochastic neural networks provide a particularly rich class of probabilistic models, which, when paired with modern optimisation algorithms and GPUs, can be remarkably efficient. We demonstrate this approach by learning the single particle transition density of ocean surface drifters from observations using a mixture density network. This provides a comprehensive description of drifter dynamics, from which we derive maps of various single-particle statistics. Our model also offers a means of simulating drifter trajectories as a discrete-time Markov process. A drifter release simulation using our model shows the emergence of concentrated clusters in the subtropical gyres, in agreement with previous studies on the formation of garbage patches. The dataset is intended to accompany the code repository archived at doi.org/10.5281/zenodo.7737161 . They are both related to the upcoming paper Brolly, M.T. (in submission), "Inferring ocean transport statistics with probabilistic neural networks".
DOI: 10.15156/bio/2483932
title: Growth chamber experiment_Hamatocaulis vernicosus
DOI: 10.17188/1285041
title: Materials Data on B4C by Materials Project

description: B4C crystallizes in the trigonal R-3m space group. The structure is three-dimensional. there are two inequivalent B sites. In the first B site, B is bonded in a distorted single-bond geometry to three equivalent B and one C atom. All B–B bond lengths are 1.79 Å. The B–C bond length is 1.66 Å. In the second B site, B is bonded in a 6-coordinate geometry to six B atoms. There is one shorter (1.72 Å) and two longer (1.83 Å) B–B bond length. There are two inequivalent C sites. In the first C site, C is bonded in a linear geometry to two equivalent C atoms. Both C–C bond lengths are 1.33 Å. In the second C site, C is bonded to three equivalent B and one C atom to form corner-sharing CB3C tetrahedra.
DOI: 10.5066/f7qf8s22
title: Assessment of Endocrine Disruption in the Shenandoah River Watershed - Chemical and Biological Data from Mobile Laboratory Fish Exposures and Other Experiments Conducted during 2014, 2015, and 2016

description: This data release presents chemical and biological results from investigations of water quality, fish endocrine disruption, and emergent insects in the Shenandoah River Watershed (Virginia and West Virginia, USA) conducted during 2014, 2015, and 2016. Multiple sampling campaigns were conducted at sites located throughout the Shenandoah River Watershed (Table 1). The complex inorganic and organic chemical characteristics of river waters and wastewater treatment plant effluents were characterized using 21 separate analytical methods at 7 laboratories (Tables 2, 3, and 4). To assess the relations between water composition and fish endocrine disruption, 21-day mobile laboratory adult fathead minnow exposure experiments with water quality and biological characterization (water collected on day 0, 7, 14, and 21; fish collected on day 0, 7, and 21) were conducted at 4 locations from August 12 to September 1, 2014, 3 locations from May 26 to June 16, 2015, and 5 locations from July 27 to August 17, 2016 (Tables 1 and 5). To assess changes in water chemistry resulting from point and non-point sources along the flow path, targeted stream-reach sampling for water quality characterization was conducted at 14 locations from August 25 to August 27, 2015 (Tables 1 and 6). Temporal variability was assessed by time-series sampling for water quality characterization at 2 locations associated with wild fish collection from April 4 to June 14, 2016 (Tables 1 and 7). Spatial variability across the watershed was assessed by landscape-directed sampling for water-quality characterization with biological assessment at 18 locations from August 9 to August 16, 2016, and 17 locations from October 17 to October 18, 2016 (Tables 1 and 8). Biological results for the 21-day mobile-laboratory adult fathead minnow exposure experiments are presented in Table 9. Biological results for the wild smallmouth bass and white sucker sampling on April 12, 2016 are presented in Table 10. Biological results for the 96-hour larval fathead minnow exposures from July, August, and October 2016 are presented in Table 11. Results for tissue analysis of pesticides and disinfection byproducts in adult fathead minnows collected at day 21 of the August to September 2014 exposure experiments are presented in Table 12. Emergent aquatic insects, terrestrial insects, and spider sampling was conducted at 4 locations from May 21 to May 25, 2015 (Tables 13, 14, and 15) and tissue samples analyzed for pesticides (Tables 16 and 17).
DOI: 10.5066/p9kushse
title: Quality assessed and modified Discharge Monitoring Report (DMR) facility and outfall locations, 2007 - 2019

description: Each year the U.S. Environmental Protection Agency (EPA) reports permit, location, and discharge information for facilities across the United States and its territories through the Discharge Monitoring Report (DMR). Because these data are cataloged through a variety of systems, including self-reporting, there are discrepancies that may lead to incorrect spatial interpretation of content in the database. The processing of this quality assessed and modified dataset included steps to evaluate the accuracy and potential limitations of DMR data between 2007 and 2019. Attributes within this tabular dataset include facility and outfall locations as well as confidence ratings for those locations, and hydrologic unit code (HUC) 12 information on outfalls above a certain threshold of confidence. Discretion should be used when utilizing this dataset and users should ensure an understanding of the metadata or content in the DMR_ReadMe.docx file.
DOI: 10.5281/zenodo.7826881
title: NOAA NSSL CLAMPS2 TROPoe Retrievals

description: These files contain 24-hour periods of retrieved thermodynamic profiles derived from observations collected by the CLAMPS2 Atmospheric Emitted Radiance Interferometer (AERI). These retrievals were processed in the IDL (e.g., the AERIoe version) of the TROPoe algorithm (see Turner and Loehnert 2014; Turner and Blumberg 2019). These data were collected during the SPLASH-SAIL project. Quicklook imagery included in QL.zip. The AERI consists of a Fourier transform interferometer, scene scanning-optics, IR detector, calibration blackbodies, and instrument control hardware. The exact system design and extensive theory of operation can be found in Knuteson et al. (2004). On a clear sky day it is capable of measuring IR radiances throughout the depth of the atmosphere with a wavenumber resolution 1 cm<sup>-1 </sup>and temporal resolution of ~20 seconds. The AERI has an absolute accuracy of &lt; 1% of the ambient blackbody radiance and has typical noise &lt; 0.2 mW ( m<sup>2</sup>sr cm<sup>-1</sup>)<sup> -1</sup>. The instrument is not able to collect observations in precipitation and when precipitation is detected a mechanical hatch is closed to protect the instrument. The radiances collected by the AERI contain information that can be used to obtain profiles of temperature, water vapor and trace gases as well as basic cloud properties. Complete detail included in the README file.
description: A climatology from soundings from Denver, Colorado was used to generate a prior for thesw retrievals; note the prior was re-centered using monthly mean integrated water vapor values from radiosondes released during the SPLASH/SAIL project at Gothic (see Adler et al. 2023). AERI noise was increased by a factor of 2 to avoid overfitting. Radiances from the AERI in the following wavenumber bands were used in the retrievals: 538.0-588.0, 612.0-618.0, 624.0-660.0, 674.0-713.0, 713.0-722.0, 860.1-864.0, 872.2-877.5, 898.2-905.4 cm-1. Temperature and water vapor observations from a surface station and RAP analysis temperature and water vapor profiles above 4 km are also used in the retrievals. Cloud-based height information from a Doppler lidar was included as well. The retrieved profiles are available every 10 minutes.
DOI: 10.5281/zenodo.8006481
title: Data supporting Mixed-anion mixed-cation perovskite (FAPbI3)0.875(MAPbBr3)0.125: an ab initio molecular dynamics study

description: Data of a molecular dynamics simulation of the mixed cation and mixed halide perovskite (FAPbI3)0.875(MAPbBr3)0.125 , as well as the end compounds FAPbI3 and MAPbBr3. Related article: <em><strong>J. Mater. Chem. A</strong></em>, 2022,<strong>10</strong>, 9592-9603, https://doi.org/10.1039/D1TA10860C arXiv:2112.09795 [cond-mat.mtrl-sci] arXiv: 2112.09795 https://doi.org/10.48550/arXiv.2112.09795
description: Original deposit in https://doi.org/10.34691/FK2/PXNHBG
DOI: 10.6073/pasta/2999764ec0527e78d44cc9ea9fc14bf0
title: Long-term monitoring of herpetofauna along the Salt and Gila Rivers in and near the greater Phoenix metropolitan area, ongoing since 2012

description: Waterways are often the focus of restoration efforts in urban areas.
  In arid regions, passive discharge of urban water sources may
  stimulate the recovery or growth of wetland and riparian features in
  dewatered or ephemeral aquatic systems. In the greater Phoenix
  metropolitan area (GPMA), sections of the Salt and Gila Rivers have
  been the targets of active restoration through seeding, planting, and
  irrigation. At the same time, revegetation has occurred in some
  sections of the rivers in response to runoff from urban water sources
  (e.g., storm drains). This dataset catalogs the results of
  herpetological surveys conducted at several locations along the Salt
  and Gila Rivers in and around the GPMA beginning in March 2012. Survey
  locations include riparian areas in urban and non-urban locations that
  have been (actively) restored or have revegetated in response to urban
  runoff, and that feature ephemeral or perennial sources of water. This
  is a long-term monitoring effort of the CAP LTER with on-going data
  collection.
DOI: 10.17188/1275794
title: Materials Data on C3N4 by Materials Project

description: C3N4 crystallizes in the trigonal R3m space group. The structure is two-dimensional and consists of three C3N4 sheets oriented in the (0, 0, 1) direction. C4+ is bonded in a trigonal planar geometry to three N3- atoms. There is two shorter (1.33 Å) and one longer (1.46 Å) C–N bond length. There are two inequivalent N3- sites. In the first N3- site, N3- is bonded in a bent 120 degrees geometry to two equivalent C4+ atoms. In the second N3- site, N3- is bonded in a trigonal planar geometry to three equivalent C4+ atoms.
DOI: 10.5067/ilfpvbtdhtdl
title: Sounder SIPS: AQUA AIRS IR-only Level 2 CLIMCAPS : Atmosphere, cloud and surface geophysical state V2
DOI: 10.6073/pasta/239b3023d75d83e795a15b36fac702e2
title: Core Old Field Grasshopper Sampling:Successional Dynamics on a Resampled Chronosequence

description: The purpose of this observational study is to describe the dynamics of ecosystem succession. The change in the number, type, and amount of plant and grazing animal species is monitored in more than 20 fields. These fields were previously cultivated, but then abandoned from agriculture at various times in the past. The fields were left undisturbed for plants to develop from seeds within the soil or brought into the fields by wind or animals. Permanent transects have been established in these abandoned fields for purposes of sampling in a consistent location from year to year. Permanent plots along these transects have been used to sample soil nutrients, (in particular, nitrogen) abundance of vegetation, species composition and herbivore populations. The sampling occurs approximately every 6 years. In the initial survey, 100 quadrats of size 1 by 0.5 m were sampled per field in 23 different fields. Abandoned fields included in E014 are 4, 5, 10, 21, 24, 26, 27, 28, 32, 35, 39, 40, 41, 44, 45, 47, 53, 70, 72, 76, 77. Fields 22(B), 29(A), and 69(C) were originally included in E014 but used for other purposes shortly after the start of the study. This experiment was established in 1983 and 1989 by principal investigators Johannes Knops and David Tilman. Past work at CDR and elsewhere has demonstrated an overriding influence of fire frequency in maintaining prairie openings and oak savanna at the prairie-forest border. Fire regimes harm some types of species while favoring others and drive light and nutrient dynamics, which in turn drive community functional attributes and diversity levels. Ultimately, fire frequency interacts with climate, N deposition, land use, and biotic invasion to determine the outcomes of tree-grass interactions and the dynamics of vegetation at ecotones such as the prairie-forest border in Minnesota. In 2006 each field was divided in half, and one half randomly chosen for periodic prescribed burning (a fire every other year). We anticipate that the burned half will continue succession to prairie grassland while the unburned half will become white pine stands if seed sources are nearby, or will otherwise undergo extremely slow succession to oaks.
DOI: 10.6073/pasta/aec67f5d71d14cd39fe8b6b34b4719f4
title: CGR02 Sweep Sampling of Grasshoppers on Konza Prairie LTER watersheds

description: Sweep samples were taken for grasshoppers (Acrididae) at two sites for each of 14 Konza Prairie LTER watersheds. Samples are taken in late July to early August. At each site on each occasion, 10 sets of 20 sweeps (200 sweeps total) are taken. Stored data include for each site on each occasion: total number of each species (all instars combined) collected and total number for each instar for each species (200 sweeps combined).