cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.2644172
title: Binary black-hole simulation SXS:BBH:1479

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.2644056
title: Binary black-hole simulation SXS:BBH:1467

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.2644021
title: Binary black-hole simulation SXS:BBH:1419

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.2644159
title: Binary black-hole simulation SXS:BBH:1496

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.2644009
title: Binary black-hole simulation SXS:BBH:1477

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.2644174
title: Binary black-hole simulation SXS:BBH:1443

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.2644289
title: Binary black-hole simulation SXS:BBH:1446

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.2644207
title: Binary black-hole simulation SXS:BBH:1497

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.2644048
title: Binary black-hole simulation SXS:BBH:1456

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.2644254
title: Binary black-hole simulation SXS:BBH:1447

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.6084/m9.figshare.22599134.v1
title: Additional file 3 of Genome-wide associated variants of subclinical atherosclerosis among young people with HIV and gene-environment interactions

description: Additional file 3: Summary statistics of GWAS in relation to cIMT among all PWH.
DOI: 10.6084/m9.figshare.22600226.v1
title: Additional file 1 of CXCR3 predicts the prognosis of endometrial adenocarcinoma

description: Additional file 1: Table S1. Identification of overlapping genes and estimate scores.
DOI: 10.6084/m9.figshare.22600229
title: Additional file 2 of CXCR3 predicts the prognosis of endometrial adenocarcinoma

description: Additional file 2: Table S2. Identification and validation of the prognostic immune-gene biomarker
DOI: 10.6084/m9.figshare.22600226
title: Additional file 1 of CXCR3 predicts the prognosis of endometrial adenocarcinoma

description: Additional file 1: Table S1. Identification of overlapping genes and estimate scores.
DOI: 10.6084/m9.figshare.22600229.v1
title: Additional file 2 of CXCR3 predicts the prognosis of endometrial adenocarcinoma

description: Additional file 2: Table S2. Identification and validation of the prognostic immune-gene biomarker
DOI: 10.6084/m9.figshare.8968811.v1
title: Additional file 1 of Study on the promotion effect of informationization on entrepreneurship: an empirical evidence from China

description: The empirical data. (DTA 832 kb)
DOI: 10.6084/m9.figshare.6874145.v1
title: Additional file 2: of Transcriptomic analysis identifies the key genes involved in stamen petaloid in lotus (Nelumbo nucifera)

description: 3900 DEGs. (XLSX 749 kb)
DOI: 10.6084/m9.figshare.22600280.v1
title: Additional file 6 of Integrated transcriptome and proteome revealed that the declined expression of cell cycle-related genes associated with follicular atresia in geese

description: Additional file 6: Table S3. Summary of the functional annotation of assembled unigenes.
DOI: 10.6084/m9.figshare.8968811
title: Additional file 1 of Study on the promotion effect of informationization on entrepreneurship: an empirical evidence from China

description: The empirical data. (DTA 832 kb)
DOI: 10.6084/m9.figshare.22600298
title: Additional file 12 of Integrated transcriptome and proteome revealed that the declined expression of cell cycle-related genes associated with follicular atresia in geese

description: Additional file 12: Table S9. The differentially expressed proteins between normal and atretic follicles.
DOI: 10.6084/m9.figshare.22600283.v1
title: Additional file 7 of Integrated transcriptome and proteome revealed that the declined expression of cell cycle-related genes associated with follicular atresia in geese

description: Additional file 7: Table S4. The FPKM value of all genes in the goose follicles.
DOI: 10.6084/m9.figshare.22600286
title: Additional file 8 of Integrated transcriptome and proteome revealed that the declined expression of cell cycle-related genes associated with follicular atresia in geese

description: Additional file 8: Table S5. The differentially expressed genes between normal and atretic follicles.
DOI: 10.6084/m9.figshare.22600298.v1
title: Additional file 12 of Integrated transcriptome and proteome revealed that the declined expression of cell cycle-related genes associated with follicular atresia in geese

description: Additional file 12: Table S9. The differentially expressed proteins between normal and atretic follicles.
DOI: 10.6084/m9.figshare.22600289
title: Additional file 9 of Integrated transcriptome and proteome revealed that the declined expression of cell cycle-related genes associated with follicular atresia in geese

description: Additional file 9: Table S6. GO enrichment of differentially expressed genes between normal and atretic follicles (molecular_function).
DOI: 10.6084/m9.figshare.22600301
title: Additional file 13 of Integrated transcriptome and proteome revealed that the declined expression of cell cycle-related genes associated with follicular atresia in geese

description: Additional file 13: Table S10. GO enrichment of differentially expressed proteins between normal and atretic follicles (p &lt; 0.05).
DOI: 10.6084/m9.figshare.22600292
title: Additional file 10 of Integrated transcriptome and proteome revealed that the declined expression of cell cycle-related genes associated with follicular atresia in geese

description: Additional file 10: Table S7. KEGG enrichment of differentially expressed genes between normal and atretic follicles.
DOI: 10.6084/m9.figshare.22600292.v1
title: Additional file 10 of Integrated transcriptome and proteome revealed that the declined expression of cell cycle-related genes associated with follicular atresia in geese

description: Additional file 10: Table S7. KEGG enrichment of differentially expressed genes between normal and atretic follicles.
DOI: 10.6084/m9.figshare.22600304.v1
title: Additional file 14 of Integrated transcriptome and proteome revealed that the declined expression of cell cycle-related genes associated with follicular atresia in geese

description: Additional file 14: Table S11. The expressions of mRNAs and proteins that corresponds to each other in the goose follicles.
DOI: 10.6084/m9.figshare.22599140
title: Additional file 5 of Genome-wide associated variants of subclinical atherosclerosis among young people with HIV and gene-environment interactions

description: Additional file 5: Summary statistics of GWAS in relation to cIMT among HIV negative control under 45 years old.
DOI: 10.6084/m9.figshare.22600301.v1
title: Additional file 13 of Integrated transcriptome and proteome revealed that the declined expression of cell cycle-related genes associated with follicular atresia in geese

description: Additional file 13: Table S10. GO enrichment of differentially expressed proteins between normal and atretic follicles (p &lt; 0.05).
DOI: 10.6084/m9.figshare.8968826
title: Additional file 1: of Ovarian cancer stem cells and macrophages reciprocally interact through the WNT pathway to promote pro-tumoral and malignant phenotypes in 3D engineered microenvironments

description: Figure S1.â U937 monocytes differentiated in 3D hanging drop arrays are equivalent to U937 monocytes differentiated in 2D. Figure S2. No change in proliferation in CSC compartments of hetero-spheroids. Figure S3. Gating strategy for Flow cytometry. Figure S4. Cancer cells do not significantly express the macrophage marker, CD206. Figure S5 CD163 expression is elevated in CSC/U937â M2 hetero-spheroids. Figure S6. Macrophages do not significantly express elevated ALDH. Figure S7. phospho-STAT3 is significantly reduced in CSC/shWNT5B-M2 hetero-spheroids compared to CSC/M2 hetero-spheroids. Figure S8. Kuramochi-CSC also drive elevated CD206 expression in macrophages, and polarized macrophages enrich ALDH+ cells in Kuramochi CSC and resistance to carboplatin. Figure S9. High-grade serous ovarian cancer Patient 259 derived CSC drive elevated CD206 expression in macrophages, and demonstrate a carboplatin resistant phenotype. Figure S10. Scatter plots for correlation of WNT5B with immune cell subsets in ovarian carcinoma. Table S1. List of primers used for qPCR experiments. (ZIP 1916 kb)
DOI: 10.6084/m9.figshare.8968826.v1
title: Additional file 1: of Ovarian cancer stem cells and macrophages reciprocally interact through the WNT pathway to promote pro-tumoral and malignant phenotypes in 3D engineered microenvironments

description: Figure S1.â U937 monocytes differentiated in 3D hanging drop arrays are equivalent to U937 monocytes differentiated in 2D. Figure S2. No change in proliferation in CSC compartments of hetero-spheroids. Figure S3. Gating strategy for Flow cytometry. Figure S4. Cancer cells do not significantly express the macrophage marker, CD206. Figure S5 CD163 expression is elevated in CSC/U937â M2 hetero-spheroids. Figure S6. Macrophages do not significantly express elevated ALDH. Figure S7. phospho-STAT3 is significantly reduced in CSC/shWNT5B-M2 hetero-spheroids compared to CSC/M2 hetero-spheroids. Figure S8. Kuramochi-CSC also drive elevated CD206 expression in macrophages, and polarized macrophages enrich ALDH+ cells in Kuramochi CSC and resistance to carboplatin. Figure S9. High-grade serous ovarian cancer Patient 259 derived CSC drive elevated CD206 expression in macrophages, and demonstrate a carboplatin resistant phenotype. Figure S10. Scatter plots for correlation of WNT5B with immune cell subsets in ovarian carcinoma. Table S1. List of primers used for qPCR experiments. (ZIP 1916 kb)
DOI: 10.6084/m9.figshare.22599148.v1
title: Additional file 4 of Whole-transcriptome profiling across different developmental stages of Aedes albopictus (Diptera: Culicidae) provides insights into chitin-related non-coding RNA and competing endogenous RNA networks

description: Additional file 4: Table S12. Information of ceRNA networks of three co-expressed biological processes in different developmental stages. Table S13. Top 20 nodes with the highest connectivity degree in three co-expressed biological processes in different developmental stages. Table S14. Primers used for qRT-PCR in this study.
DOI: 10.6084/m9.figshare.20501957
title: Additional file 1 of Comparative genomic analysis of five freshwater cyanophages and reference-guided metagenomic data mining

description: Additional file 1: Fig. S1. The morphology of host cyanobacterium P. mucicola Chao 1806. Fig. S2. PCR assays indicated that Pam1 and Pam5 always coexist in the crude lysate of a single plaque of infection. Fig. S3. The circular genomic maps of cyanophages a-c Pam3~Pam5, respectively. Fig. S4. Whole-genome alignment of Pam1 against Pam5 that performed by the software Mauve. Fig. S5. Structural analyses of lysogeny-associated proteins of Pam1 and Pam5. Fig. S6. Comparisons of other three host CRISPR spacer regions against DNA segments of Pam2 genome. Fig. S7. Cartoon representations of predicted structures of putative RBPs from Pam1, 2, 3, 5. Fig. S8. Metagenomic fragments recruitment analyses against the genomes of a-e Pam1~Pam5 via RBB strategy, respectively. Fig. S9. The genomic maps of three virtual cyanophages a-c k141_145115, k141_145220 and k141_53315, respectively. Fig. S10. Multiple whole-genome alignments of the clustered a circular and b linear contigs with their neighboring cyanophages via software Mauve, respectively. Table S1. The coordinates of 11 estuaries that are major rivers to the Lake Chaohu. Table S2. Predicted ORFs of cyanophages Pam1~Pam5. Table S3. Four tRNA genes in the Pam2 genome. Table S4. Primary sequence similarities of the putative RBPs of cyanophages Pam1, 2, 3, 5. Table S5. DALI search results of the putative RBPs of cyanophages Pam1, 2, 3, 5. Table S6. Seven circular contigs assembled from the metagenomic data of the Nanfei estuary in October, 2017.
DOI: 10.6084/m9.figshare.22599131
title: Additional file 2 of Genome-wide associated variants of subclinical atherosclerosis among young people with HIV and gene-environment interactions

description: Additional file 2: Summary statistics of GWAS in relation to cIMT among all HIV negative control.
DOI: 10.6084/m9.figshare.22599146
title: Additional file 6 of Genome-wide associated variants of subclinical atherosclerosis among young people with HIV and gene-environment interactions

description: Additional file 6: Summary statistics of GWAS in relation to cIMT among PWH above 45 years old.
DOI: 10.6084/m9.figshare.20502020
title: Additional file 1 of Structure and character analysis of cotton response regulator genes family reveals that GhRR7 responses to draught stress

description: Additional file 1: Table S1. The primers used for experiment in this study. Table S2. Information of RR genes in different species. Table S3. Information of the cotton RR genes in this study. Table S4. Collinearity analyses of RR genes family in four cotton species. Table S5. Analysis of GhRRs cis-elements. Table S6. RNA-Seq data analysis of GhRRs expression profiling in different stresses. Table S7. RNA-Seq data analysis of GhRRs expression profiling in different tissues.
DOI: 10.6084/m9.figshare.22599149.v1
title: Additional file 7 of Genome-wide associated variants of subclinical atherosclerosis among young people with HIV and gene-environment interactions

description: Additional file 7: Summary statistics of GWAS in relation to cIMT among PWH under 45 years old.
DOI: 10.6084/m9.figshare.22599148
title: Additional file 4 of Whole-transcriptome profiling across different developmental stages of Aedes albopictus (Diptera: Culicidae) provides insights into chitin-related non-coding RNA and competing endogenous RNA networks

description: Additional file 4: Table S12. Information of ceRNA networks of three co-expressed biological processes in different developmental stages. Table S13. Top 20 nodes with the highest connectivity degree in three co-expressed biological processes in different developmental stages. Table S14. Primers used for qRT-PCR in this study.
DOI: 10.6084/m9.figshare.22600313
title: Additional file 1 of Research on Pickering emulsification technology based on the concept of “combination of medicine and adjuvant” to improve the pH stability of volatile oil in solid preparations—taking Lingzhu Pulvis as an Example

description: Additional file 1.
DOI: 10.6084/m9.figshare.22600313.v1
title: Additional file 1 of Research on Pickering emulsification technology based on the concept of “combination of medicine and adjuvant” to improve the pH stability of volatile oil in solid preparations—taking Lingzhu Pulvis as an Example

description: Additional file 1.
DOI: 10.4121/ab7bc46e-e163-4cec-8a5d-6d987025dd3a.v1
title: Data underlying analysis of the microbial community composition in the manuscript " The impact of processing technology on microbial community composition and functional properties of Beninese maize ogi"

description: Raw and cleaned data files related to 16S rRNA and ITS genes amplicon sequencing of the DNA extracted directly from maize starch samples after obtention (labelled “_0h”) and after fermentation (labelled “_6h”, “_8h”, “_12h”, or “_24h”, corresponding to the duration of the fermentation). The maize starch samples were obtained from starch slurries collected from traditional processors in Benin, West Africa. The fermented maize starch after fermentation is called “<em>ogi</em>”. The raw data were obtained from Novogene Company Ltd (Cambridge, United kingdom) and processed to generate clean data files, which were consequently used to investigate the microbial community composition in the maize starch and maize <em>ogi</em> samples. Details on the amplicon sequencing and bioinformatic analysis are provided as supplementary method attached to the related manuscript.
DOI: 10.6084/m9.figshare.25159721
title: Supplementary Material for: Adrenocortical carcinoma with a renal vein thrombus extending to the inferior vena cava successfully resected with the left kidney and distal pancreatectomy: A case report

description: Introduction: Adrenocortical carcinoma (ACC) is an extremely rare and aggressive tumor, and its clinical characteristics are poorly defined because of its rarity. Case presentation: We report a 64-year-old man who presented with upper abdominal pain and weight loss. Computed tomography revealed a 15 cm left adrenal tumor compressing the pancreas ventrally and a tumor thrombus in the inferior vena cava (IVC) originating from the left renal vein. Positron emission tomography–computed tomography revealed 18F-fluorodeoxyglucose uptake only in the tumor and tumor thrombus, and radical surgery was planned. Intraoperatively, the tumor was visible on the posterior stomach wall, and the tumor adhered to the pancreas and left kidney. We excised the tumor with part of the pancreas and the left kidney and excised the thrombus from the IVC after clamping. The final diagnosis was ACC, tumor-node-metastasis grade T3N1M0, stage III. The patient received chemotherapy and radiotherapy postoperatively; however, two liver metastases appeared 6 months after surgery. Chemotherapy was continued, and no exacerbation of the liver metastases was observed. Posterior segment resection of the liver was performed 16 months after the initial surgery. Conclusion: This report of a rare case of ACC involving the pancreas with tumor thrombus extension to the IVC stresses that this combination of conditions does not preclude radical surgery. However, more data are needed regarding chemotherapy and radiotherapy, as well as relapse treatment, and further research on ACC is essential for a favorable prognosis.
DOI: 10.6084/m9.figshare.25159721.v1
title: Supplementary Material for: Adrenocortical carcinoma with a renal vein thrombus extending to the inferior vena cava successfully resected with the left kidney and distal pancreatectomy: A case report

description: Introduction: Adrenocortical carcinoma (ACC) is an extremely rare and aggressive tumor, and its clinical characteristics are poorly defined because of its rarity. Case presentation: We report a 64-year-old man who presented with upper abdominal pain and weight loss. Computed tomography revealed a 15 cm left adrenal tumor compressing the pancreas ventrally and a tumor thrombus in the inferior vena cava (IVC) originating from the left renal vein. Positron emission tomography–computed tomography revealed 18F-fluorodeoxyglucose uptake only in the tumor and tumor thrombus, and radical surgery was planned. Intraoperatively, the tumor was visible on the posterior stomach wall, and the tumor adhered to the pancreas and left kidney. We excised the tumor with part of the pancreas and the left kidney and excised the thrombus from the IVC after clamping. The final diagnosis was ACC, tumor-node-metastasis grade T3N1M0, stage III. The patient received chemotherapy and radiotherapy postoperatively; however, two liver metastases appeared 6 months after surgery. Chemotherapy was continued, and no exacerbation of the liver metastases was observed. Posterior segment resection of the liver was performed 16 months after the initial surgery. Conclusion: This report of a rare case of ACC involving the pancreas with tumor thrombus extension to the IVC stresses that this combination of conditions does not preclude radical surgery. However, more data are needed regarding chemotherapy and radiotherapy, as well as relapse treatment, and further research on ACC is essential for a favorable prognosis.
DOI: 10.6084/m9.figshare.14211672.v1
title: Additional file 2 of Unveiling the long non-coding RNA profile of porcine reproductive and respiratory syndrome virus-infected porcine alveolar macrophages

description: Additional file 2.
DOI: 10.6084/m9.figshare.14211678.v1
title: Additional file 4 of Unveiling the long non-coding RNA profile of porcine reproductive and respiratory syndrome virus-infected porcine alveolar macrophages

description: Additional file 4.
DOI: 10.6084/m9.figshare.6350087
title: Additional file 5: of Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits

description: Table S4. Enrichment of significant aseQTLs and eQTLs within bovine biological signals. This table shows the level of enrichment of each type of significant quantitative trait loci (QTLs) at biological hallmarks. Significant aseQTLs/eQTLs are defined by the P-value from aseQTL/eQTL mapping, and four P-value thresholds were tested (from 10−5 to 10−8). “&lt; 0.0001” denotes the degree of overlap between the significant aseQTLs/eQTLs and the biological hallmark larger than all permuted cases. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.22599164
title: Additional file 4 of FZD1/KLF10-hsa-miR-4762-5p/miR-224-3p-circular RNAs axis as prognostic biomarkers and therapeutic targets for glioblastoma: a comprehensive report

description: Additional file 4. The statistical characteristics of DEmRNAs identified in this study.
DOI: 10.25919/p9q3-kj13
title: Parkes observations for project P1229 semester 2023OCTS_11

description: We propose a pulsar timing campaign of three millisecond pulsars discovered in previous pulsar searches of Fermi gamma-ray sources. Despite an original follow-up effort, it was not possible to produce a pulsar timing solution with which to detect the expected gamma-ray pulsations. The proposed campaign combines a set of dense, initial observations with additional observations at increasing separation, a bootstrap approach which is generally successful at constraining all the fundamental parameters of the pulsar timing solution. Securing the gamma-ray pulsations will enable probes of the radio and gamma-ray emission mechanisms and searches for multi-wavelength counterparts. And perhaps more importantly, it will allow these pulsars to be incorporated into the gamma-ray pulsar timing array, providing additional baselines which will increase its sensitivity to low-frequency gravitational waves.
DOI: 10.6084/m9.figshare.6874484
title: Additional file 11: of Biphasic modulation of insulin signaling enables highly efficient hematopoietic differentiation from human pluripotent stem cells

description: Table S1. FPKM value of EC and HSPC global gene expression (XLSX 2681 kb)
DOI: 10.6084/m9.figshare.22600361
title: Additional file 5 of Whole exome sequencing with a focus on cardiac disease-associated genes in families of sudden unexplained deaths in Yunnan, southwest of China

description: Additional file 5.
DOI: 10.6084/m9.figshare.22600361.v1
title: Additional file 5 of Whole exome sequencing with a focus on cardiac disease-associated genes in families of sudden unexplained deaths in Yunnan, southwest of China

description: Additional file 5.