cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7930488
title: Supplementary Datasets for Focused mid-crustal magma intrusion during continental break-up in Ethiopia'

description: Supplementary Datasets for Focused mid-crustal magma intrusion during continental break-up in Ethiopia', including geochemical analyses (standards, secondary standards, and data) Dataset S1: Full dataset of all standards, secondary standards, and data.<br> Dataset S2: High resolution calibrated transmitted and reflected light microscope images of analysed melt inclusions.
description: Now including additional information on post- and pre-PEC fluids estimated from MagmaSat.
DOI: 10.5281/zenodo.7106118
title: Supplementary Datasets for Focused mid-crustal magma intrusion during continental break-up in Ethiopia'

description: Supplementary Datasets for Focused mid-crustal magma intrusion during continental break-up in Ethiopia', including geochemical analyses (standards, secondary standards, and data) Dataset S1: Full dataset of all standards, secondary standards, and data.<br> Dataset S2: High resolution calibrated transmitted and reflected light microscope images of analysed melt inclusions.
description: Now including additional information on post- and pre-PEC fluids estimated from MagmaSat.
DOI: 10.6084/m9.figshare.20799637
title: A tiled multi-city urban objects dataset for city-scale building energy simulation

description: City-scale building energy simulation provides a significant reference for planning and urban management. However, large-scale building energy simulation is often not feasible due to the huge amount of computational resources required and the lack of high-precision building models. Here, We developed a tiled multi-city urban objects dataset and a distributed data ontology. Such a data metric not only transforms the conventional whole-city simulation model into patch-based distributed simulations but also incorporates interactive relationships among objects in cities. This dataset stores urban objects (8,196,003 buildings; 238,736 vegetations; 2,381,6698 streets; 430,364 UrbanTiles; 430,464 UrbanPatches), UrbanTiles, and UrbanPatches) from thirty major cities in the United States. It also aggregated morphological features for each UrbanTile.
DOI: 10.6084/m9.figshare.20799637.v5
title: A tiled multi-city urban objects dataset for city-scale building energy simulation

description: City-scale building energy simulation provides a significant reference for planning and urban management. However, large-scale building energy simulation is often not feasible due to the huge amount of computational resources required and the lack of high-precision building models. Here, We developed a tiled multi-city urban objects dataset and a distributed data ontology. Such a data metric not only transforms the conventional whole-city simulation model into patch-based distributed simulations but also incorporates interactive relationships among objects in cities. This dataset stores urban objects (8,196,003 buildings; 238,736 vegetations; 2,381,6698 streets; 430,364 UrbanTiles; 430,464 UrbanPatches), UrbanTiles, and UrbanPatches) from thirty major cities in the United States. It also aggregated morphological features for each UrbanTile.
DOI: 10.6084/m9.figshare.20799637.v4
title: A tiled multi-city urban objects dataset for city-scale building energy simulation

description: City-scale building energy simulation provides a significant reference for planning and urban management. However, large-scale building energy simulation is often not feasible due to the huge amount of computational resources required and the lack of high-precision building models. Here, We developed a tiled multi-city urban objects dataset and a distributed data ontology. Such a data metric not only transforms the conventional whole-city simulation model into patch-based distributed simulations but also incorporates interactive relationships among objects in cities. This dataset stores urban objects (8,196,003 buildings; 238,736 vegetations; 2,381,6698 streets; 430,364 UrbanTiles; 430,464 UrbanPatches), UrbanTiles, and UrbanPatches) from thirty major cities in the United States. It also aggregated morphological features for each UrbanTile.
DOI: 10.6084/m9.figshare.21904893.v3
title: Supplementary data

description: book
DOI: 10.5517/ccdc.csd.cc2bpr4y
title: CCDC 2165850: Experimental Crystal Structure Determination

description: Related Article: Yushou Chen, Lianghong Liu, Xuerong Wang, Zhouyuji Liao, Runbin Wang, Yanshi Xiong, Jianxin Cheng, Guijuan Jiang, Jintao Wang, Xiangwen Liao|2022|Dalton Trans.|51|14980|doi:10.1039/D2DT01531E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23269331
title: Supplementary Material for: Hypertrophic pachymeningitis with persistent intrathecal inflammation secondary to neurosarcoidosis treated with intraventricular chemotherapy: a case report

description: Background: Hypertrophic pachymeningitis (HP) is a rare immune-mediated disease characterized by thickening of the dura mater with consecutive cranial neuropathy. While HP is usually treated with systemic immunotherapies, response to therapy is variable and may be limited by insufficient drug concentrations in the brain. We report on a patient with HP and marked lymphocytic pleocytosis refractory to various systemic immunotherapies, who was treated with intraventricular chemotherapy. Methods: A 57-year-old patient with HP manifesting with vision and hearing loss had sustained clinical progression despite various systemic immunotherapies. Intraventricular chemotherapy with methotrexate, cytarabine and dexamethasone was initiated. We present clinical, imaging and cerebrospinal fluid (CSF) findings, including cytokine levels before and after intraventricular treatment. Results: Rapid decrease of cell count, lactate and pro-fibrotic cytokine levels in the CSF following intraventricular chemotherapy was paralleled by a mild reduction of dura thickness in MRI. The already severely impaired visual acuity and hearing loss did not progress further. Treatment was complicated by exacerbation of previously subtle psychiatric symptoms. Follow-up was terminated after 6 months as the patient suffered from a fatal ischemic stroke. Autopsy revealed neurosarcoidosis as the underlying cause of HP. Conclusion: This case report suggests that intrathecal chemotherapy can reduce the inflammatory milieu in the CNS and should be considered for treatment-refractory HP before irreversible damage of cranial nerves has occurred.
DOI: 10.6084/m9.figshare.23269343
title: Supplementary Material for: Case Report Contraversive ocular tilt reaction with contralesional pseudo-abducens palsy in a patient with thalamomesencephalic stroke

description: We report a patient presenting with unique neuroophthalmological features of contraversive ocular tilt reaction and concomitant contralesional pseudo-abducens palsy. Magnetic resonance imaging confirmed the presence of an acute infarct in the right thalamomesencephalic region. We discuss the clinical topography of these unique neuroophthalmological findings.
DOI: 10.6084/m9.figshare.23269343.v1
title: Supplementary Material for: Case Report Contraversive ocular tilt reaction with contralesional pseudo-abducens palsy in a patient with thalamomesencephalic stroke

description: We report a patient presenting with unique neuroophthalmological features of contraversive ocular tilt reaction and concomitant contralesional pseudo-abducens palsy. Magnetic resonance imaging confirmed the presence of an acute infarct in the right thalamomesencephalic region. We discuss the clinical topography of these unique neuroophthalmological findings.
DOI: 10.6084/m9.figshare.23269346
title: Supplementary Material for: Thrombolysis for acute wake-up and unclear onset strokes with alteplase at 0.6 mg/kg in clinical practice: THAWS2 Study

description: Introduction: The aim of this study was to determine the safety and efficacy of intravenous (IV) alteplase at 0.6 mg/kg for patients with acute wake-up or unclear onset strokes in clinical practice. Methods: This multicenter observational study enrolled acute ischemic stroke patients with last-known-well time &gt;4.5 h who had mismatch between DWI and FLAIR and were treated with IV alteplase. The safety outcomes were symptomatic intracranial hemorrhage (sICH) after thrombolysis, all-cause deaths and all adverse events. The efficacy outcomes were favorable outcome defined as an mRS score of 0–1 or recovery to the same mRS score as the premorbid score, complete independence defined as an mRS score of 0–1 at 90 days, and change in NIHSS at 24 h from baseline. Results: Sixty-six patients (35 females; mean age, 74±11 years; premorbid complete independence, 54 [82%]; median NIHSS on admission, 11) were enrolled at 15 hospitals. Two patients (3%) had sICH. Median NIHSS changed from 11 (IQR, 6.75–16.25) at baseline to 5 (3–12.25) at 24 h after alteplase initiation (change, –4.8±8.1). At discharge, 31 patients (47%) had favorable outcome and 29 (44%) had complete independence. None died within 90 days. Twenty-three (35%) also underwent mechanical thrombectomy (no sICH, NIHSS change of –8.5±7.3), of whom 11 (48%) were completely independent at discharge. Conclusions: In real-world clinical practice, IV alteplase for unclear onset stroke patients with DWI-FLAIR mismatch provided safe and efficacious outcomes comparable to those in previous trials. Additional mechanical thrombectomy was performed safely in them.
DOI: 10.6084/m9.figshare.23269346.v1
title: Supplementary Material for: Thrombolysis for acute wake-up and unclear onset strokes with alteplase at 0.6 mg/kg in clinical practice: THAWS2 Study

description: Introduction: The aim of this study was to determine the safety and efficacy of intravenous (IV) alteplase at 0.6 mg/kg for patients with acute wake-up or unclear onset strokes in clinical practice. Methods: This multicenter observational study enrolled acute ischemic stroke patients with last-known-well time &gt;4.5 h who had mismatch between DWI and FLAIR and were treated with IV alteplase. The safety outcomes were symptomatic intracranial hemorrhage (sICH) after thrombolysis, all-cause deaths and all adverse events. The efficacy outcomes were favorable outcome defined as an mRS score of 0–1 or recovery to the same mRS score as the premorbid score, complete independence defined as an mRS score of 0–1 at 90 days, and change in NIHSS at 24 h from baseline. Results: Sixty-six patients (35 females; mean age, 74±11 years; premorbid complete independence, 54 [82%]; median NIHSS on admission, 11) were enrolled at 15 hospitals. Two patients (3%) had sICH. Median NIHSS changed from 11 (IQR, 6.75–16.25) at baseline to 5 (3–12.25) at 24 h after alteplase initiation (change, –4.8±8.1). At discharge, 31 patients (47%) had favorable outcome and 29 (44%) had complete independence. None died within 90 days. Twenty-three (35%) also underwent mechanical thrombectomy (no sICH, NIHSS change of –8.5±7.3), of whom 11 (48%) were completely independent at discharge. Conclusions: In real-world clinical practice, IV alteplase for unclear onset stroke patients with DWI-FLAIR mismatch provided safe and efficacious outcomes comparable to those in previous trials. Additional mechanical thrombectomy was performed safely in them.
DOI: 10.6084/m9.figshare.16633283.v1
title: Additional file 15 of Transcriptomic analysis of salt tolerance-associated genes and diversity analysis using indel markers in yardlong bean (Vigna unguiculata ssp. sesquipedialis)

description: Additional file 15: Supplementary Table S15. Primer used for qRT-PCR analysis.
DOI: 10.6084/m9.figshare.8310182
title: Additional file 13: of Comparative physiology and transcriptome analysis allows for identification of lncRNAs imparting tolerance to drought stress in autotetraploid cassava

description: Table S10. The 104 DE lncRNAs specific to 2Ă plants in response to drought stress. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.17163008
title: Additional file 2 of OmicsOne: associate omics data with phenotypes in one-click

description: Additional file 2: Table S1. The analysis results of OmicsOne applied on the proteome dataset of HGSOC
DOI: 10.6084/m9.figshare.17163011
title: Additional file 3 of OmicsOne: associate omics data with phenotypes in one-click

description: Additional file 3: Table S2. The analysis results of OmicsOne applied on the glycoproteome dataset of HGSOC
DOI: 10.6084/m9.figshare.17163014.v1
title: Additional file 4 of OmicsOne: associate omics data with phenotypes in one-click

description: Additional file 4: Table S3. The analysis results of OmicsOne applied on the glycoproteome dataset of LSCC
DOI: 10.6084/m9.figshare.11920323
title: Early Cretaceous continent basalts in the Alxa Block, NW China: geochronology, geochemistry, and tectonic implications

description: NE Asia has experienced Significant extensional events in the Early Cretaceous, including related volcanic rocks, extensional basins, metamorphic core complexes (MCCs), and low-angle detachment faults. Previous studies primarily focused on the eastern North China Craton (NCC); however, the extensional manifestations in the western NCC are poorly studied and the mechanism is still controversial. This study reports Wuliji volcanic clusters in northern Alxa Block, westmost NCC. Geologic mapping shows that the volcanic cluster is mainly composed of dark grey basalts with interlayered pyroclastic rocks showing columnar joints. The youngest LA-ICP-MS zircon U-Pb age is 103 Ma, consistent with the age constrained by fossils in the interlayered sandstones. Though the Wuliji basalts have amounts of captured zircons, the high MgO, TFe<sub>2</sub>O<sub>3</sub> and low SiO<sub>2</sub>, along with Nb/U, Nb/Ta, Zr/Hf ratios and positive Nb, Ta anomalies, indicating no contamination of continental crustal materials. These alkaline basalts are characterized by enrichment in light rare earth elements (LREEs) and large ion lithophile elements (LILEs), slightly positive Eu anomalies and no Nb and Ta depletions similar to other volcanic rocks in Alxa Block, implying an affinity with ocean island basalts (OIB). These volcanic rocks could have been derived from the partial melting of spinel lherzolite in an intracontinental rift setting. The basalts in the Alxa Block are slightly younger than basalts in the eastern NCC in the Early Cretaceous. The occurrence of Early Cretaceous basalts and coeval rift basins with various extensional faults in the westmost NCC may have resulted from the eastward movement of mantle materials due to the rollback of the Paleo-Pacific Plate to the east.
DOI: 10.6084/m9.figshare.7207628
title: Integrative Analysis of Transcriptomic and Methylomic Data in Photoperiod-dependent Regulation of Cucumber Sex Expression

description: This dataset provides information about whole genome bisulphite sequencing (WGBS) and RNA-seq. The plant material is cucumber shoot species that were subjected to photoperiod treatment.<br>
DOI: 10.6084/m9.figshare.16633295
title: Additional file 4 of Transcriptomic analysis of salt tolerance-associated genes and diversity analysis using indel markers in yardlong bean (Vigna unguiculata ssp. sesquipedialis)

description: Additional file 4: Supplementary Table S4. Significant DEGs exclusive to Suzi 41 and Sujiang 1419 during salt stress.
DOI: 10.6084/m9.figshare.19254687
title: Additional file 1 of Epigenetic regulation of seed-specific gene expression by DNA methylation valleys in castor bean

description: Additional file 1: Table S1. Summary of RNA-seq data generated from 16 diverse tissues in castor bean. Table S2. Genes’ expression level (FPKM) in 16 different tissues of castor bean. Table S3. All tissue-specific genes in castor bean. Table S4. Seed stage-specific genes in castor bean. Table S5. Seed-specific genes related to lipid biosynthesis pathways in castor bean. Table S6. Conserved DNA methylation valleys (DMVs) in castor bean. Table S7. DMV genes in castor bean. Table S8. Conserved DMV genes among Arabidopsis, Soybean and Castor bean. Table S9. Differential histone modification regions between leaf and endosperm. Table S10. Seed-specific DMV genes potentially regulated by histone modifications. Table S11. Leaf-specific DMV genes potentially regulated by histone modifications. Table S12. Distal DMVs and the nearest genes in castor bean. Table S13. Distal DMVs of seed-specific genes potentially regulated by H3K27ac and/or H3K27me3. Table S14. All primers used in this study.
DOI: 10.6084/m9.figshare.16633295.v1
title: Additional file 4 of Transcriptomic analysis of salt tolerance-associated genes and diversity analysis using indel markers in yardlong bean (Vigna unguiculata ssp. sesquipedialis)

description: Additional file 4: Supplementary Table S4. Significant DEGs exclusive to Suzi 41 and Sujiang 1419 during salt stress.
DOI: 10.6084/m9.figshare.16633265
title: Additional file 10 of Transcriptomic analysis of salt tolerance-associated genes and diversity analysis using indel markers in yardlong bean (Vigna unguiculata ssp. sesquipedialis)

description: Additional file 10: Supplementary Table S10. InDels identified on individual chromosomes of yardlong bean.
DOI: 10.5281/zenodo.10684721
title: 4. Supplementary material--progression by species

description: Code and data to run supplementary analyses about
DOI: 10.5281/zenodo.10684722
title: 4. Supplementary material--progression by species

description: Code and data to run supplementary analyses about
DOI: 10.6084/m9.figshare.16633304.v1
title: Additional file 7 of Transcriptomic analysis of salt tolerance-associated genes and diversity analysis using indel markers in yardlong bean (Vigna unguiculata ssp. sesquipedialis)

description: Additional file 7: Supplementary Table S7. KEGG pathways enriched with DEGs under high salinity in Suzi 41 and Sujiang 1419.
DOI: 10.6084/m9.figshare.16644892
title: Bioaccessibility of Inorganic Arsenic in Rice: Probabilistic Estimation and Identification of Influencing Factors

description: Bioaccessibility, defined as the fraction of inorganic arsenic (iAs) that becomes soluble in the GI tract and ready for absorption, is one of the determining factors that impacts the iAs exposure through rice consumption. The objective of this study is to, based on published data, quantitatively characterize the bioaccessibility of iAs in rice and identify its influencing factors. A total of 256 published papers were identified and reviewed, among which eight were selected as they provide adequate data to support the analyses of bioaccessibility and influencing factors. A meta-analysis was performed to characterize the probabilistic distribution of the bioaccessibility of iAs. A general regression analysis was performed to identify the influencing factors of the bioaccessibility. A beta distribution (a = 4.91, b = 1.85) with a mean and 90<sup>th</sup> percentile interval of 73% (43%, 95%) was estimated to adequately describe the iAs bioaccessibility in rice. The regression analysis shows that grain size (<i>p</i>-value &lt; 0.001) and the inorganic-to-total proportion of arsenic (<i>p</i>-value &lt; 0.001) are negatively associated with bioaccessibility, while milling status has no impact.
DOI: 10.6084/m9.figshare.11402031
title: Clinical outcome and comparison between squamous and non-squamous cell carcinoma of the larynx

description: <b>Background:</b> The various pathological types of non-squamous cell carcinomas (nSCCs) of the larynx accounted for about 5% laryngeal malignancies, but the knowledge regarding these pathological behaviors, therapeutic models and prognostic factors was limited. <b>Objectives:</b> To investigate the clinical characteristics and the survival outcomes of nSCCs of the larynx. <b>Material and methods:</b> A total of 106 patients diagnosed with laryngeal nSCC between 2003 and 2014 were retrospectively investigated from a cohort of 4,796 patients with laryngeal malignancies. <b>Results:</b> Spindle cell carcinoma, malignant salivary gland carcinoma, neuroendocrine carcinoma, non-Hodgkin’s lymphomas, and carcinosarcoma accounted for the majority of the nSCCs of the larynx. In laryngeal nSCCs (excluding non-Hodgkin lymphomas), there was no significant difference in overall survival (OS) by tumor subsite (<i>p</i> = .818), clinical-stage (<i>p</i> = .051) or T stage (<i>p</i> = .412), but the difference in OS by N stage was statistically significant (<i>p</i> = .001). Upon comparison of propensity score-matched groups, the OS was longer in SCCs of the larynx (<i>p</i> = .0004). <b>Conclusions and significance:</b> Primary nSCC of the larynx is rare, and its diagnosis depends on comprehensive immunohistochemical examination, as the clinical characteristics are non-specific compared with SCC. The overall prognosis of nSCC is relatively poor compared with that of SCC in the larynx.
DOI: 10.6084/m9.figshare.11402031.v1
title: Clinical outcome and comparison between squamous and non-squamous cell carcinoma of the larynx

description: <b>Background:</b> The various pathological types of non-squamous cell carcinomas (nSCCs) of the larynx accounted for about 5% laryngeal malignancies, but the knowledge regarding these pathological behaviors, therapeutic models and prognostic factors was limited. <b>Objectives:</b> To investigate the clinical characteristics and the survival outcomes of nSCCs of the larynx. <b>Material and methods:</b> A total of 106 patients diagnosed with laryngeal nSCC between 2003 and 2014 were retrospectively investigated from a cohort of 4,796 patients with laryngeal malignancies. <b>Results:</b> Spindle cell carcinoma, malignant salivary gland carcinoma, neuroendocrine carcinoma, non-Hodgkin’s lymphomas, and carcinosarcoma accounted for the majority of the nSCCs of the larynx. In laryngeal nSCCs (excluding non-Hodgkin lymphomas), there was no significant difference in overall survival (OS) by tumor subsite (<i>p</i> = .818), clinical-stage (<i>p</i> = .051) or T stage (<i>p</i> = .412), but the difference in OS by N stage was statistically significant (<i>p</i> = .001). Upon comparison of propensity score-matched groups, the OS was longer in SCCs of the larynx (<i>p</i> = .0004). <b>Conclusions and significance:</b> Primary nSCC of the larynx is rare, and its diagnosis depends on comprehensive immunohistochemical examination, as the clinical characteristics are non-specific compared with SCC. The overall prognosis of nSCC is relatively poor compared with that of SCC in the larynx.
DOI: 10.6084/m9.figshare.16633277
title: Additional file 13 of Transcriptomic analysis of salt tolerance-associated genes and diversity analysis using indel markers in yardlong bean (Vigna unguiculata ssp. sesquipedialis)

description: Additional file 13: Supplementary Table S13. List of 84 yardlong bean germplasm accessions used in this study.
DOI: 10.6084/m9.figshare.16633289.v1
title: Additional file 2 of Transcriptomic analysis of salt tolerance-associated genes and diversity analysis using indel markers in yardlong bean (Vigna unguiculata ssp. sesquipedialis)

description: Additional file 2: Supplementary Table S2. Summary of novel transcript isoforms found in V. unguiculata genomic data.
DOI: 10.6084/m9.figshare.16633298
title: Additional file 5 of Transcriptomic analysis of salt tolerance-associated genes and diversity analysis using indel markers in yardlong bean (Vigna unguiculata ssp. sesquipedialis)

description: Additional file 5: Supplementary Table S5. Differentially expressed genes that are up- or down-regulated in both Suzi 41 and Sujiang 1419 during salt stress.