cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3627779_d5
title: Additional file 2: of Bacterial small RNAs in the Genus Rickettsia

description: List of target genes predicted to interact with R. prowazekii strain Brienl sRNAs. (XLSX 86 kb)
DOI: 10.6084/m9.figshare.c.3627770_d7
title: Additional file 3: Table S3. of Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315

description: Annotated and categorised TSS in the B. cenocepacia J2315 genome. (XLSX 353Â kb)
DOI: 10.6084/m9.figshare.c.3627770_d8
title: Additional file 6: Table S5. of Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315

description: Promoter motifs based on MEME [15] analysis. (XLSX 124Â kb)
DOI: 10.6084/m9.figshare.c.3627827_d1
title: MOESM1 of Maintenance-energy requirements and robustness of Saccharomyces cerevisiae at aerobic near-zero specific growth rates

description: Additional file 1. Set of differentially expressed genes during the transition from exponential growth to stationary phase in aerobic batches of S. cerevisiae with glucose as carbon source [34], and overlap with the set of differentially expressed genes during aerobic retentostat cultures in the present study.
DOI: 10.6084/m9.figshare.c.3627833_d1
title: Additional file 1 of Novel gene sets improve set-level classification of prokaryotic gene expression data

description: Supplementary material. (ZIP 90 kb)
DOI: 10.6084/m9.figshare.c.3627770_d10
title: Additional file 1: Table S1. of Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315

description: Number of mapped reads per RNA sample. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3627842_d1
title: Additional file 1: of RepeatAnalyzer: a tool for analysing and managing short-sequence repeat data

description: Â A table including all known A. marginale SSRs. Each SSR includes all names it has been assigned, separated by semicolons, and sources where it has been referenced are cited from the main text. (XLS 68.0 kb)
DOI: 10.6084/m9.figshare.c.3627935_d4
title: Additional file 2: Table S1. of Ancient pathogen-driven adaptation triggers increased susceptibility to non-celiac wheat sensitivity in present-day European populations

description: Details of sequence profiles for each NCWS subject. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.c.3627950_d1
title: MOESM2 of Factors associated with utilization of emergency contraception among female students in Mizan-Tepi University, South West Ethiopia

description: Additional file 2. English version of the questionnaire.
DOI: 10.6084/m9.figshare.c.3627950_d2
title: MOESM1 of Factors associated with utilization of emergency contraception among female students in Mizan-Tepi University, South West Ethiopia

description: Additional file 1. COREQ checklist for focus group.
DOI: 10.6084/m9.figshare.c.3627959_d1
title: Additional file 1 of Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification

description: This tar file contains images of the binary cluster tree, before and after the pruning. The HowToInterpretTreeDiagrams.txt file describes how the diagrams should be interpreted. (TAR 1290 kb)
DOI: 10.15468/dl.8dacjp
title: Occurrence Download

description: A dataset containing 680762 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The University and Jepson Herbaria -- Vascular Plants"
 ]
}

 The dataset includes 680762 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033904-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3627974_d1
title: Additional file 2: Table S2. of Second Harmonic Generation microscopy reveals collagen fibres are more organised in the cervix of postmenopausal women

description: Raw data from quantitative assessment of SHG images using 2D Fourier analysis. (XLS 61Â kb)
DOI: 10.6084/m9.figshare.c.3627974_d2
title: Additional file 1: Table S1. of Second Harmonic Generation microscopy reveals collagen fibres are more organised in the cervix of postmenopausal women

description: Raw data from qualitative assessment of SHG images. (XLS 18Â kb)
DOI: 10.6084/m9.figshare.c.3628088_d6
title: Additional file 3: of Molecular profile of dissociative drug ketamine in relation to its rapid antidepressant action

description: The results of functional enrichment analysis performed with Enrichr tool for two clusters of genes significantly altered by the selected NMDA antagonists. The table consists of an enriched term, a number of input genes in the pathway (overlap), p-value (pâ
DOI: 10.6084/m9.figshare.c.3628115_d2
title: Additional file 9: of 
                     De novo assembly and characterisation of the field pea transcriptome using RNA-Seq

description: Transcript expression for each tissue. (A) This file details contigs expression for the individual (tissue-specific) libraries after alignment to the Kaspa assembly. (B) This file details contigs expression for the individual (tissue-specific) libraries after alignment to the Parafield assembly. (ZIP 20813Â kb)
DOI: 10.6084/m9.figshare.c.3628115_d3
title: Additional file 5: of 
                     De novo assembly and characterisation of the field pea transcriptome using RNA-Seq

description: (A) Bioinformatic annotation (BLASTN) of Kaspa contigs against the chickpea, M. truncatula and soybean CDS. The information includes the BLASTN results obtained as a result of comparison of Kaspa contigs against the chickpea, M. truncatula and soybean CDSs at a threshold E value
DOI: 10.6084/m9.figshare.c.3628127_d1
title: Additional file 1: of Effects of a balance-based exergaming intervention using the Kinect sensor on posture stability in individuals with Parkinsonâ  s disease: a single-blinded randomized controlled trial

description: Dataset. (SAV 6 kb)
DOI: 10.6084/m9.figshare.c.3628130_d1
title: Additional file 1: of Assessment of hypertension management in primary health care settings in Kinshasa, Democratic Republic of Congo

description: Dataset. This file contains data supporting the results of this study ( http://dx.doi.org/10.5061/dryad.r7082 ).
DOI: 10.6084/m9.figshare.c.3628115_d4
title: Additional file 2: of 
                     De novo assembly and characterisation of the field pea transcriptome using RNA-Seq

description: Bioinformatic annotation (BLAST) of Kaspa and Parafield contigs against the nr database. The information includes the BLASTX results obtained as a result of comparison of Kaspa and Parafield contigs against the nr database at a threshold E value
DOI: 10.6084/m9.figshare.c.3628148_d1
title: Additional file 1: Table S1. of Case mix adjustment of health outcomes, resource use and process indicators in childbirth care: a register-based study

description: Detailed definitions and data source for all case mix variables included. This table details the exact codes and the data source for the variables used for analysis. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3628244_d1
title: MOESM1 of DNA analysis of molluscs from a museum wet collection: a comparison of different extraction methods

description: Additional file 1. In the additional file a detailed list of all samples used in this study can be found, including sample age and the inventory numbers. Furthermore, the DNA concentration [ng/Âľl] for both extraction methods (Promega-THK and the Gen-ial-ATK) and the formaldehyde content [mg/l] are given. The PCR success of all samples is indicated as well.
DOI: 10.6084/m9.figshare.c.3628244_d2
title: MOESM2 of DNA analysis of molluscs from a museum wet collection: a comparison of different extraction methods

description: Additional file 2. The additional file shows a table of all 20 taxa analysed in this study together with information of which species sequences of the COI-lf and the 16S-sf could be obtained.
DOI: 10.6084/m9.figshare.c.3628238_d2
title: Additional file 4 of Enhanceosome transcription factors preferentially dimerize with high mobility group proteins

description: Table of Gene Ontology enriched terms. Gene Ontology enriched terms with FDR &lt;0.01 for predicted dimers of HMG-A; ATF2, ATF2; HMG-B and IRF-A; IRF-B types. Column â  Cell_typeâ   contains information about enriched term in the indicated cell type. When this entry is empty it indicates that the enriched term is with respect to the union of of all dimer instances, taken over all cell types in which the dimer was predicted. (XLS 377 kb)
DOI: 10.6084/m9.figshare.c.3628238_d3
title: Additional file 3 of Enhanceosome transcription factors preferentially dimerize with high mobility group proteins

description: Table of inclusion of dimer instances within Billboard predicted enhancers. Presented are 64 human genes that contain within Âą10 kb of their TSS at least three instances of predicted dimers. For each of these instances, we report the number of informant species in which the instance ended up within a predicted enhancer. (XLS 20 kb)
DOI: 10.6084/m9.figshare.c.3628238_d4
title: Additional file 7 of Enhanceosome transcription factors preferentially dimerize with high mobility group proteins

description: Comparison of human and mouse dimer selected genes. Fisherâ  s exact test p-values for comparing human and mouse dimer selected genes for all pairs of cell types from human and mouse. (XLS 360 kb)
DOI: 10.6084/m9.figshare.c.3628250_d3
title: Additional file 11: of Flowering time adaption in Swedish landrace pea (Pisum sativum L.)

description: Variation in the SN gene. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3628250_d4
title: Additional file 10: of Flowering time adaption in Swedish landrace pea (Pisum sativum L.)

description: Variation in the LF gene. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3628256_d1
title: MOESM3 of Time series analysis of malaria in Afghanistan: using ARIMA models to predict future trends in incidence

description: Additional file 4. Area-Averaged of Precipitation Rate monthly 0.25 ().
DOI: 10.6084/m9.figshare.c.3628238_d6
title: Additional file 8 of Enhanceosome transcription factors preferentially dimerize with high mobility group proteins

description: List of human and mouse DNase I hypersensitivity datasets considered. (XLS 38 kb)
DOI: 10.6084/m9.figshare.c.3628250_d5
title: Additional file 13: of Flowering time adaption in Swedish landrace pea (Pisum sativum L.)

description: P-values for Welch two sample t-tests between different accession types and expression levels for the LF and SN gene. (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.c.3628178_d14
title: Additional file 1: of Integrative genomic deconvolution of rheumatoid arthritis GWAS loci into gene and cell type associations

description: Contains the cis-eQTLs with FDR &lt;5Â %. (TXT 104041 kb)
DOI: 10.6084/m9.figshare.c.3628238_d8
title: Additional file 6 of Enhanceosome transcription factors preferentially dimerize with high mobility group proteins

description: Comparison of human and mouse Gene Ontology enriched terms. Fisherâ  s exact test p-values for comparing human and mouse enriched Gene Ontology terms for the same dimer and for all pairs of cell types from human and mouse. (XLS 184 kb)
DOI: 10.6084/m9.figshare.c.3628259_d1
title: Additional file 1: Table S1. of Sex-linked markers in the North American green frog (Rana clamitans) developed using DArTseq provide early insight into sex chromosome evolution

description: Specimen data including Yale Peabody Museum tag numbers for adult specimens used in this study. (XLSX 14Â kb)
DOI: 10.15468/dl.wt6745
title: Occurrence Download

description: A dataset containing 699 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Morella inodora (W.Bartram) Small"
 ]
}

 The dataset includes 699 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033939-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3628346_d1
title: Additional file 3: of Variation in population levels of physical activity in European adults according to cross-European studies: a systematic literature review within DEDIPAC

description: Data extraction file. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3628328_d3
title: Additional file 5: Table S2. of Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms

description: Assembly metrics of the three sub-assemblies and the final concatenated assembly for each of the six datasets. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3628328_d4
title: Additional file 1: Table S1. of Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms

description: Raw NGS data characteristics pre and post quality filtering with Trimmomatic. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3628328_d5
title: Additional file 9: Table S6. of Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms

description: p-values generated by Kolmogrov-Smirnov distribution tests. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3628328_d6
title: Additional file 6: Table S3. of Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms

description: Clustering metrics for the three sub-assemblies for each of the six datasets. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3628346_d4
title: Additional file 4: of Variation in population levels of physical activity in European adults according to cross-European studies: a systematic literature review within DEDIPAC

description: Quality assessment file. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3628328_d7
title: Additional file 7: Table S4. of Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms

description: TransDecoder metrics for the concatenated assemblies for each of the six datasets. (XLSX 9Â kb)
DOI: 10.15468/dl.j33e5a
title: Occurrence Download

description: A dataset containing 948980 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Year 1978-2023"
 ]
}

 The dataset includes 948980 records from 805 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033935-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3628475_d1
title: Additional file 3: of Genomic and functional analyses unveil the response to hyphal wall stress in Candida albicans cells lacking Î˛(1,3)-glucan remodeling

description: Class 2: Transcripts that are less abundant in the phr1Î  mutant than in the wild type. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3628454_d5
title: Additional file 5: Table S4. of 
                     Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes

description: KEGG pathways represented by leaf transcripts. (XLS 719 kb)
DOI: 10.6084/m9.figshare.c.3628475_d2
title: Additional file 1: of Genomic and functional analyses unveil the response to hyphal wall stress in Candida albicans cells lacking β(1,3)-glucan remodeling

description: Transcriptional profile of wild type and phr1Δ cells during induction of hyphal growth. (XLSX 735 kb)
DOI: 10.6084/m9.figshare.c.3628481_d1
title: Additional file 1: Table S1. of Epigenomic and metabolic responses of hypothalamic POMC neurons to gestational nicotine exposure in adult offspring

description: Gene list. Read-pairs were aligned by STAR to the mouse reference genome. STAR alignments were run through HTSeq for determination of read-pair counts by genes. Genes are denoted by their Ensembl gene ID, gene symbol, and gene type (columns Aâ  C). EdgeR calculated average gene expression values across all offspring (column D) and fold-changes between nicotine-exposed and control offspring (FC (N/C), column E). EdgeR (column F), baySeq (column G), and DESeq (column H) determined differential gene expression. FDR false discovery rate-adjusted p value, CPM counts per million. (XLSX 2364 kb)
DOI: 10.6084/m9.figshare.c.3628481_d2
title: Additional file 4: Table S4. of Epigenomic and metabolic responses of hypothalamic POMC neurons to gestational nicotine exposure in adult offspring

description: Co-expressed lncRNAs and protein-coding genes in cis. Co-expression of lncRNAs (columns A and B) with their nearest (adjacent or overlapping) protein-coding gene (column D) was determined by the Pearson’s correlation coefficient r (column F). An r value &gt; 0.602 or  1 CPM (columns K and L) were considered for analyses. LncRNA expression was in most cases less than that of the coding gene (column M). Coding genes function in various biological processes (column N). (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3628454_d6
title: Additional file 13: Table S12. of 
                     Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes

description: SSRs in specialized metabolic pathway transcripts. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3628481_d3
title: Additional file 2: Table S2. of Epigenomic and metabolic responses of hypothalamic POMC neurons to gestational nicotine exposure in adult offspring

description: Expressed protein-coding genes in PANTHER pathways. Expressed protein-coding genes denoted by Ensembl Gene ID (column A), gene name and symbol (column B), Panther family/subfamily (column C), Panther protein class (column D), and average expression in CPM (column E) were assigned to PANTHER defined pathways, which are referred to by name and accession number. Only genes expressed at levelsâ  &gt;â  1 CPM were considered for analysis. CPM counts per million. (XLSX 172 kb)
DOI: 10.6084/m9.figshare.c.3628454_d7
title: Additional file 11: Table S10. of 
                     Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes

description: SSRs in leaf transcripts. (XLS 2660 kb)
DOI: 10.6084/m9.figshare.c.3628475_d3
title: Additional file 2: of Genomic and functional analyses unveil the response to hyphal wall stress in Candida albicans cells lacking Î˛(1,3)-glucan remodeling

description: Class 1: Transcripts that are more abundant in the phr1Î  mutant than in the wild type. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3628481_d4
title: Additional file 3: Table S3. of Epigenomic and metabolic responses of hypothalamic POMC neurons to gestational nicotine exposure in adult offspring

description: Expression ranking of lncRNAs in POMC neurons. LncRNA genes referred to by Ensembl Gene ID (column A), gene name (column B), and gene type (column C) were ranked by average expression across all samples (column D). Only lncRNA genes expressed at levelsâ  &gt;â  1 CPM were considered for analysis. CPM counts per million. (XLSX 98 kb)
DOI: 10.6084/m9.figshare.c.3628454_d8
title: Additional file 9: Table S8. of 
                     Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes

description: Putative transcription factors. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3628454_d9
title: Additional file 4: Table S3. of 
                     Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes

description: Annotation of root transcripts to the Uniprot database. (XLS 16520 kb)
DOI: 10.15468/dl.s9z72a
title: Occurrence Download

description: A dataset containing 615431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "TaxonKey is one of (Acer platanoides L., Adelges tsugae Annand, 1924, Agrilus planipennis Fairmaire, 1888, Alliaria petiolata (M.Bieb.) Cavara & Grande, Channa argus (Cantor, 1842), Crocodylus niloticus Laurenti, 1768, Dreissena polymorpha (Pallas, 1771), Faxonius rusticus (Girard, 1852), Frangula alnus Mill., Heracleum mantegazzianum Sommier & Levier, Heracleum sphondylium L., Hydrocharis morsus-ranae L., Impatiens glandulifera Royle, Kali tragus (L.) Scop., Lissachatina fulica (Bowdich, 1822), Lycorma delicatula (White, 1845), Myriophyllum spicatum L., Phragmites australis subsp. australis, Potamogeton crispus L., Pterois volitans (Linnaeus, 1758), Pueraria lobata (Willd.) Ohwi, Python bivittatus Kuhl, 1820, Reynoutria japonica Houtt., Reynoutria sachalinensis (F.Schmidt) Nakai, Reynoutria ×bohemica Chrtek & Chrtková, Rhamnus cathartica L., Rhinella marina (Linnaeus, 1758), Stratiotes aloides L., Trapa natans L., Vincetoxicum nigrum (L.) Moench, Vincetoxicum rossicum (Kleopow) Barbar.)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 615431 records from 586 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033924-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dz9xhq
title: Occurrence Download

description: A dataset containing 765 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Magnolia stellata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 765 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061007-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/by8qnk
title: 66.zip
DOI: 10.57745/op7vut
title: 67.zip
DOI: 10.57745/vrfd7v
title: 68.zip
DOI: 10.57745/yupqyw
title: 73.zip
DOI: 10.57745/ea0rbi
title: 78.zip
DOI: 10.57745/hw0lko
title: 77.zip
DOI: 10.57745/fffojz
title: 80.zip
DOI: 10.57745/hrth7y
title: 84.zip
DOI: 10.57745/xytrme
title: 87.zip
DOI: 10.57745/zc6ntn
title: 91.zip
DOI: 10.57745/blwtvh
title: 92.zip
DOI: 10.57745/blr5sg
title: 93.zip
DOI: 10.57745/hr3yjw
title: 94.zip
DOI: 10.57745/xehj9z
title: 95.zip
DOI: 10.57745/lbjg9m
title: readme_en_FRPV_results.md

description: :unav