cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh242059.07fu
title: SH242059.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.nypxnp
title: Occurrence Download

description: A dataset containing 13035 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada"
 ]
 },
 "TaxonKey is Storeria dekayi (Holbrook, 1839)",
 "Year 1980-2021"
 ]
}

 The dataset includes 13035 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0318099-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hsfiay
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pleione humilis (Sm.) D.Don"
 ]
}

 The dataset includes 49 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005751-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.duqzl0
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "or" : [
 "DatasetKey is Penguins of Antarctica"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008771-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y85bu8
title: Occurrence Download

description: A dataset containing 2142837 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Malaysia",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2142837 records from 1193 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230401-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.scapgg
title: Occurrence Download

description: A dataset containing 10982 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((23.60156 45.27076,193.45312 60.58697,193.89843 67.40298,162.96093 74.15449,140.27343 76.87811,104.41406 82.17283,86.13281 80.74178,63.63281 79.1493,46.75781 76.32422,58.05468 70.22776,23.60156 70.22776,23.60156 45.27076))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Epilobium adenocaulon Hausskn."
 ]
}

 The dataset includes 10982 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0315867-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvztnm
title: Occurrence Download

description: A dataset containing 7644692 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Brassicales"
 ]
}

 The dataset includes 7644692 records from 2695 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245757-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjtmtv
title: Occurrence Download

description: A dataset containing 2227019 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2227019 records from 1199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064828-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s84tzg
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orthanthera viminea Wall. ex Wight"
 ]
}

 The dataset includes 46 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064949-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.de5bmh
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiorrhiza pallidula Ridl."
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064950-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pxhrtp
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orthilia kareliniana (A.K.Skvortsov) Holub"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064954-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8rjzhr
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiorrhiza palustris Valeton"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064955-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10896465
title: Genome annotation workflow for Effrenium voratum RCC1521

description: Scripts of complete genome annotation workflow for Effrenium voratum RCC1521, associated with the key genome paper (Shah et al., 2024, Massive genome reduction predates the divergence of Symbiodiniaceae dinoflagellates, under review in ISME Journal). An earlier preprint of this manuscript is available at bioRxiv: https://doi.org/10.1101/2023.03.24.534093.

See README_EvRCC1521.txt for more detail.
DOI: 10.5281/zenodo.10896473
title: Genome annotation workflow for Effrenium voratum rt-383

description: Scripts of complete genome annotation workflow for Effrenium voratum rt-383, associated with the key genome paper (Shah et al., 2024, Massive genome reduction predates the divergence of Symbiodiniaceae dinoflagellates, under review in ISME Journal). An earlier preprint of this manuscript is available at bioRxiv: https://doi.org/10.1101/2023.03.24.534093.

See README_Evrt383.txt for more detail.
DOI: 10.5281/zenodo.10896493
title: Genome annotation workflow for Effrenium voratum CCMP421

description: Scripts of complete genome annotation workflow for Effrenium voratum CCMP421, associated with the key genome paper (Shah et al., 2024, Massive genome reduction predates the divergence of Symbiodiniaceae dinoflagellates, under review in ISME Journal). An earlier preprint of this manuscript is available at bioRxiv: https://doi.org/10.1101/2023.03.24.534093.

See README_EvCCMP421.txt for more detail.
DOI: 10.5281/zenodo.10894296
title: Genome data from Effrenium voratum CCMP421, RCC1521, and rt-383 and their analysis

description: This dataset represents secondary data generated from the genomic analysis of three isolates of Effrenium voratum (CCMP421, RCC1521, and rt-383), the early-diverging, free-living lineage of Symbiodiniaceae dinoflagellates. Theese data include (A) assembled genome sequences, predicted gene models and protein sequences, and (B) data and scripts associated with generation of graphs and figures presented in the key genome paper (Shah et al., 2024, Massive genome reduction predates the divergence of Symbiodiniaceae dinoflagellates, under review in ISME Journal). An earlier preprint of this manuscript is available at bioRxiv: https://doi.org/10.1101/2023.03.24.534093.

A. Genome assemblies, annotation and gene models. The dataset includes, for each taxon, (a) the de novo assembled genome sequences in FASTA format (*genome.fa.tgz), (b) structural annotation of the assembled genome in GFF3 format (*.genome.annotation.gff3.tgz), (c) the predicted protein-coding sequences of gene models in FASTA format (*genemodel.CDS.fa.tgz), (d) the predicted protein sequences of gene models in FASTA format (*genemodel.PROT.fa.tgz), and (c) the associated sequences and gene annotations of organellar genomic sequences (i.e. mitochondrial and plastid) (*organellar.tgz). Functional annotations of all gene models from the three genomes are available in the Excel spreadsheet (*GeneModels.xlsx).

B. Data and scripts associated with generation of graphs and figures in Shah et al. (2024). These files are organised based on key analyses specific to main figures and supplementary figures in the paper.

See README.txt for a more-detailed description of the files.
DOI: 10.5281/zenodo.10896466
title: Genome annotation workflow for Effrenium voratum RCC1521

description: Scripts of complete genome annotation workflow for Effrenium voratum RCC1521, associated with the key genome paper (Shah et al., 2024, Massive genome reduction predates the divergence of Symbiodiniaceae dinoflagellates, under review in ISME Journal). An earlier preprint of this manuscript is available at bioRxiv: https://doi.org/10.1101/2023.03.24.534093.

See README_EvRCC1521.txt for more detail.
DOI: 10.5281/zenodo.10896474
title: Genome annotation workflow for Effrenium voratum rt-383

description: Scripts of complete genome annotation workflow for Effrenium voratum rt-383, associated with the key genome paper (Shah et al., 2024, Massive genome reduction predates the divergence of Symbiodiniaceae dinoflagellates, under review in ISME Journal). An earlier preprint of this manuscript is available at bioRxiv: https://doi.org/10.1101/2023.03.24.534093.

See README_Evrt383.txt for more detail.
DOI: 10.5281/zenodo.10896494
title: Genome annotation workflow for Effrenium voratum CCMP421

description: Scripts of complete genome annotation workflow for Effrenium voratum CCMP421, associated with the key genome paper (Shah et al., 2024, Massive genome reduction predates the divergence of Symbiodiniaceae dinoflagellates, under review in ISME Journal). An earlier preprint of this manuscript is available at bioRxiv: https://doi.org/10.1101/2023.03.24.534093.

See README_EvCCMP421.txt for more detail.
DOI: 10.5281/zenodo.8373421
title: Genome data from Effrenium voratum CCMP421, RCC1521, and rt-383 and their analysis

description: This dataset represents secondary data generated from the genomic analysis of three isolates of Effrenium voratum (CCMP421, RCC1521, and rt-383), the early-diverging, free-living lineage of Symbiodiniaceae dinoflagellates. Theese data include (A) assembled genome sequences, predicted gene models and protein sequences, and (B) data and scripts associated with generation of graphs and figures presented in the key genome paper (Shah et al., 2024, Massive genome reduction predates the divergence of Symbiodiniaceae dinoflagellates, under review in ISME Journal). An earlier preprint of this manuscript is available at bioRxiv: https://doi.org/10.1101/2023.03.24.534093.

A. Genome assemblies, annotation and gene models. The dataset includes, for each taxon, (a) the de novo assembled genome sequences in FASTA format (*genome.fa.tgz), (b) structural annotation of the assembled genome in GFF3 format (*.genome.annotation.gff3.tgz), (c) the predicted protein-coding sequences of gene models in FASTA format (*genemodel.CDS.fa.tgz), (d) the predicted protein sequences of gene models in FASTA format (*genemodel.PROT.fa.tgz), and (c) the associated sequences and gene annotations of organellar genomic sequences (i.e. mitochondrial and plastid) (*organellar.tgz). Functional annotations of all gene models from the three genomes are available in the Excel spreadsheet (*GeneModels.xlsx).

B. Data and scripts associated with generation of graphs and figures in Shah et al. (2024). These files are organised based on key analyses specific to main figures and supplementary figures in the paper.

See README.txt for a more-detailed description of the files.
DOI: 10.5281/zenodo.8373422
title: Genome data from Effrenium voratum CCMP421, RCC1521, and rt-383

description: This dataset represents secondary data generated from the genomic analysis of three isolates of <em>Effrenium voratum</em> (CCMP421, RCC1521, and rt-383), the early-diverging, free-living lineage of Symbiodiniaceae dinoflagellates. The dataset includes, for each taxon, (a) the <em>de novo</em> assembled genome sequences in FASTA format (<strong>*genome.fa.tgz</strong>), (b) structural annotation of the assembled genome in GFF3 format (<strong>*.genome.annotation.gff3.tgz</strong>), (c) the predicted protein-coding sequences of gene models in FASTA format (<strong>*genemodel.CDS.fa.tgz</strong>), (d) the predicted protein sequences of gene models in FASTA format (<strong>*genemodel.PROT.fa.tgz</strong>), and (c) the associated sequences and gene annotations of organellar genomic sequences (i.e. mitochondrial and plastid) (<strong>*organellar.tgz</strong>). Functional annotations of all gene models from the three genomes are available in the Excel spreadsheet (<strong>*GeneModels.xlsx</strong>). See <strong>README.txt</strong> for a more-detailed description of the files.
description: {"references": ["Shah S et al. (2023) Massive genome reduction occurred prior to the origin of coral algal symbionts. bioRxiv 2023.03.24.534093."]}
DOI: 10.15468/dl.nyxp8j
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiorrhiza parviflora Reinw. ex Korth."
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064957-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xrmrve
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiorrhiza patula Craib"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064958-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6pfsts
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiorrhiza pauciflora Hook.f."
 ]
}

 The dataset includes 35 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064959-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24903288
title: <b>The Mediating Role of Anxiety in the Relationship Between Misophonia and Quality of Life: Findings from the Validated Turkish Version of MisoQuest</b>

description: Misophonia, characterized by an increased sensitivity to specific sounds and associated stimuli, is a condition that has received growing attention in recent years. However, there is still a lack of consensus in the literature on the nature of misophonia, which can have serious negative effects on individuals' lives, how it interacts with other psychological factors, and to what extent it affects individuals' quality of life. This study provides valuable insights into the relatively poorly understood misophonia and its implications on individuals' quality of life. The results of our research are important in several respects. Since there is no standard measurement tool to be used in the diagnosis and evaluation of misophonia, we think that making existing measurement tools available cross-culturally will contribute to the results of research in the misophonia literature becoming generalizable and comparable. For this, we adapted MisoQuest, a validated measurement tool, to our own culture. Second, results underscore the importance of recognizing misophonia as a potentially disruptive condition in people's lives. Third, our study highlights the critical role of anxiety in mediating the relationship between misophonia and quality of life. Our findings will provide a new perspective for interventions and supports to be developed for misophonia.
DOI: 10.15468/dl.92z8pg
title: Occurrence Download

description: A dataset containing 225371 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gasterosteus aculeatus Linnaeus, 1758"
 ]
}

 The dataset includes 225371 records from 629 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064942-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0920714.10fu
title: SH0920714.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0920715.10fu
title: SH0920715.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0920716.10fu
title: SH0920716.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0920717.10fu
title: SH0920717.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0920718.10fu
title: SH0920718.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.