cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gw76v6
title: Occurrence Download

description: A dataset containing 45924 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2026-01-02",
 "EventDate is less than or equal to 2026-02-01",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 },
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 45924 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002081-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddjwxg
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Intraspecific variation and taxonomy of northern pika Ochotona hyperborea (Mammalia, Lagomorpha)"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002082-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.1zcrjdfns
title: Characterization and mutagenesis of Chinese hamster ovary cells endogenous retroviruses to inactivate viral particle release

description: The Chinese hamster ovary (CHO) cells used to produce biopharmaceutical
 proteins are known to contain type‐C endogenous retrovirus (ERV) sequences
 in their genome and to release retroviral‐like particles. Although
 evidence for their infectivity is missing, this has raised safety
 concerns. As the genomic origin of these particles remained unclear, we
 characterized type‐C ERV elements at the genome, transcriptome, and viral
 particle RNA levels. We identified 173 type‐C ERV sequences clustering
 into three functionally conserved groups. Transcripts from one type‐C ERV
 group were full‐ length, with intact open reading frames, and cognate
 viral genome RNA was loaded into retroviral‐like particles, suggesting
 that this ERV group may produce functional viruses. CRISPR‐Cas9 genome
 editing was used to disrupt the gag gene of the expressed type‐C ERV
 group. Comparison of CRISPR‐derived mutations at the DNA and RNA level led
 to the identification of a single ERV as the main source of the release of
 RNA‐loaded viral particles. Clones bearing a Gag loss‐of‐function mutation
 in this ERV showed a reduction of RNA‐containing viral particle release
 down to detection limits, without compromising cell growth or therapeutic
 protein production. Overall, our study provides a strategy to mitigate
 potential viral particle contaminations resulting from ERVs during
 biopharmaceutical manufacturing.
description: The 173 ERV type-C sequences were obtain from PacBio sequences
 and contain only the ERVs sequences not the integration locus. So there
 are still sequencing errors in these sequences. They represent the
 sequence used in the figure 1B of the paper.  The 3
 express ERV sequencing were validated with Sanger Senquencing and
 annotated manually by PO Duroy, and the sequences contain the integration
 locus.
DOI: 10.5061/dryad.ksn02v70p
title: Experimental evidence that physical activity affects the multivariate associations among muscle attachments (entheses)

description: The morphology of entheses (muscle/tendon attachment sites) on bones is
 routinely used in paleontological and bioarcheological studies to infer
 the physical activity patterns of ancient vertebrate species including
 hominins. However, such inferences have often been disputed due to
 limitations of the quantitative methods commonly employed and a lack of
 experimental evidence demonstrating direct effects of physical activity on
 entheseal morphology. Recently, we introduced a new and improved method of
 quantifying and analyzing entheseal morphology that involves repeatable
 three-dimensional measurements combined with multivariate statistics
 focused on associations among multiple entheses. Here, to assess the
 validity of our method for investigating variation in entheseal morphology
 related to physical activity patterns, we analyzed femora of growing
 turkeys that were experimentally exercised for 10 weeks on either an
 inclined or declined treadmill or served as controls (n= 15 specimens,
 5/group). Our multivariate approach identified certain patterns involving
 three different entheses (associated with muscles gluteus primus, medial
 gastrocnemius, vastus medialis and adductor magnus) that clearly
 differentiated controls from runners. Importantly, these differences were
 not observable when comparing groups within each of the three entheseal
 structures separately. Body mass was not correlated with the resulting
 multivariate patterns. These results provide the first experimental
 evidence that variation in physical activity patterns has a direct
 influence on entheseal morphology. Moreover, our findings highlight the
 promise of our newly-developed quantitative methods for analyzing the
 morphology of entheses to reconstruct the behavior of extinct vertebrate
 species based on their skeletal remains.
description: This dataset consists of the three-dimensional (3D) measurements
 (in square mm) of the muscle attachment areas used for the multivariate
 analyses of our study (principal component analyses).
DOI: 10.5061/dryad.qv9s4mw9p
title: Implementing standardized provider documentation in a tertiary epilepsy clinic: supplemental material

description: Objective: To incorporate standardized documentation into an epilepsy
 clinic and use these standardized data to compare patients’ perception of
 epilepsy diagnosis to provider documentation. Methods: Using quality
 improvement methodology, we implemented interventions to increase
 documentation of epilepsy diagnosis, seizure frequency and type from 49.8%
 to 70% of adult non-employee patients seen by six providers over five
 months of routine clinical care. The main intervention consisted of an
 interactive SmartPhrase that mirrored a documentation template developed
 by the Epilepsy Learning Healthcare System. We assessed the weekly
 proportion of complete SmartPhrases among eligible patient-encounters with
 a statistical process control chart. We used a subset of patients with
 established epilepsy care linked to existing patient-reported survey data
 to examine the proportion of patient-to-provider agreement on epilepsy
 diagnosis (yes vs no/unsure). We also examined socio-demographic and
 clinical characteristics of patients who disagreed vs agreed with
 provider’s documentation of epilepsy diagnosis. Results: The median
 SmartPhrase weekly completion rate was 78%. Established patients disagreed
 with providers with respect to epilepsy diagnosis in 18.5% of encounters
 (κ = 0.13), indicating that they did not have, or were unsure if they had,
 epilepsy despite having a provider-documented epilepsy diagnosis. Patients
 who disagreed with providers were similar to those who agreed with respect
 to age, sex, ethnicity, marital status, seizure frequency, type, and other
 quality of life measures. Conclusions: This project supports the
 feasibility of implementing standardized documentation of data relevant to
 epilepsy care in a tertiary epilepsy clinic and highlights an opportunity
 for improvement in patient-provider communication.
DOI: 10.5061/dryad.jh9w0vt70
title: Data from: Structural and catalytic properties of copper silicate nanomaterials

description: Nanosized copper silicates with three different structural morphology
 (amorphous, nanotubes and MEL) were prepared using different synthesis
 methods. The physico-chemical properties of copper silicates were
 characterized by XRD, FT-IR, SEM, HRTEM, N2-physisorption, XPS and H2-TPR
 techniques. The results indicated that the preparation conditions affect
 reduction behavior and textural properties of nanosized copper silicates.
 Hydrothermal synthesis method yielded chrysocolla-like CuSiO3 nanotubes,
 which possessed high surface area and pore volume with easy reducibility.
 The catalytic performances of synthesized copper silicate nanostructures
 were evaluated for dehydrogenation of methanol. It was found that
 dehydrogenation activity is depended on the structural properties of
 copper silicates. Highest activity was observed for copper silicates with
 nanotube morphology. Catalytic dehydrogenation activity of copper
 silicates was also related to presence of more number of Cu-O-Si species,
 easy reducibility and Lewis acid centers. The CuSiO3 nanotubes sample also
 exhibited good stability under investigated reaction conditions that
 deactivation was not detected for 48 h.
DOI: 10.21223/p3/m40fyt
title: Dataset for: Advanced clones of group B1 cycle 5, population B (B1C5) in Huancayo-Peru

description: Group B1, cycle B1C5 of Population B (fifth cycle of recombination of the pure native Andigena group B1), is the result of a new population improvement strategy in the absence of R- genes started at CIP in 1990. The group B1 derives of primitive cultivars of Solanum tuberosum ssp. andigena, known to be free of R- genes. These clones were planted in a randomized complete block design (RCBD) with 2-4 replicates at La Victoria, Huancayo, Junin-Peru, located at 3290 masl.
DOI: 10.5061/dryad.dbrv15dxb
title: Data from: Enhanced correlations of EST-SSR based genetic distance with hybrid performance, specific hybridizing ability and heterosis using effect-increasing and effect-decreasing alleles: a case study in Eucalyptus L'Hér

description: A factorial mating population between 10 Eucalyptus
 urophylla S. T. Blake and 10 E.
 tereticornis Smith parents tested at two sites was used to
 investigate the relationship of parental genetic variation to hybrid mean
 value (MV), specific hybridizing ability (SHA), and heterosis. Based on
 184 polymorphic expressed sequence tag (EST) derived simple sequence
 repeats (SSR) markers, genetic distance (GD) between parents (GDAll)
 ranged from 0.293 to 0.783, averaging at 0.700. For tree height,
 breast-high diameter and wood density at age of 7.5 years, GDAll,
 GDs based on markers beyond 0.70 and 0.80 in polymorphism information
 content and GDs based on alleles within 0.10–0.90, 0.20–0.80, and
 0.30–0.70 in allele frequency were not significantly correlated with MV,
 SHA, and the majority of heterosis types. GD based on effect-significant
 alleles was significantly correlated only with a few of traits or for
 certain site, while GDs based on effect-increasing (GDIA) and
 effect-decreasing alleles (GDDA) had significantly positive and negative
 correlations, respectively, with all the MV and SHA as well as across-site
 mid-parent heterosis. These results suggest the potential utility of
 GDIA and GDDA for molecular prediction of hybrid
 performance, SHA, and heterosis in Eucalyptus and may
 have implications for hybrid breeding in other plants.
description: Raw data for Chen S, Zhou C, He X, Weng Q, Li F, Li M, Guo Y, Gan
 S. 2020. Enhanced correlations of EST-SSR based genetic distance with
 hybrid performance, specific hybridizing ability and heterosis using
 effect-increasing and effect-decreasing alleles: a case study in
 Eucalyptus L'Hér.. Tree Genetics & Genomes, 16(1): 16.
 doi:10.1007/s11295-019-1410-1. An Excel file was
 provided including five worksheets for: 1) 20 parental genotypes against
 184 SSR markers, 2) mean value, specific hybridizing ability and
 heterosis, 3) Effect-increasing (IAs) and decreasing (DAs) alleles for the
 20 parents in 7.5-year-old tree height across sites, at Changtai trial and
 at Yong'an trial, 4) Effect-increasing (IAs) and decreasing (DAs)
 alleles for the 20 parents in 7.5-year-old tree diameter across sites, at
 Changtai trial and at Yong'an trial, and 5) Effect-increasing (IAs)
 and decreasing (DAs) alleles for the 20 parents in 7.5-year-old wood
 density across sites, at Changtai trial and at Yong'an
 trial.
DOI: 10.5061/dryad.g79cnp5kv
title: Effect of space diffuser on flow characteristics of a centrifugal pump by computational fluid dynamic analysis

description: Achieving an optimal configuration of the diffuser is indispensable for
 high pump performances. In this work, a numerical study on diffuser
 configuration is conducted for a high pump performance using a
 computational fluid dynamics code, and the effects of the wrap angle and
 the relative position of the diffuser vane to the impeller on pump
 performances are included. The results indicate that the modified diffuser
 with a suitable wrap angle may improve the pump hydraulic efficiency and
 the head by approximately 4% and 8%, respectively, while a suitable
 position of the diffuser vane can enhance the pump head by more than 4%.
 Meanwhile, the pressure recovery coefficient and the local Euler head of
 the diffuser are adopted to evaluate the diffuser performance. For a high
 pump performance, the local Euler head of the diffuser has a peak value at
 the leading edge with the change rate of zero along the meridian
 streamline, meaning that no blade loading at the leading edge of the
 diffuser guarantees a better match between the impeller and the diffuser.
DOI: 10.5061/dryad.15dv41nt0
title: Data from: Parental age effects and the evolution of senescence

description: Most theory on the evolution of senescence implicitly assumes that all
 offspring are of equal quality. However, in addition to age-related
 declines in survival and fecundity (classically-defined senescence), many
 organisms exhibit age-related declines in offspring quality, a phenomenon
 known as a parental age effect. Theoretical work suggests that parental
 age effects may alter age-trajectories of selection and therefore shape
 the evolution of senescence; however, to date, these analyses have been
 limited to idealized life cycles, and models of maternal care in human
 populations. To gain a broader understanding of how parental age effects
 may shape age-trajectories of selection, we extend the classic
 age-structured population projection model to also account for parental
 age structure, and apply this model to empirical data from an aquatic
 plant known to exhibit parental age effects (the duckweed Lemna minor), as
 well as a diverse set of simulated life cycles. Our results suggest that
 parental age effects alter predictions from classic theory on the
 evolution of senescence. Age-related declines in offspring quality reduce
 the relative value of late-life reproduction, leading to steeper
 age-related declines in the force of natural selection than would
 otherwise be expected, and potentially favoring the evolution of more
 rapid rates of senescence.
DOI: 10.5061/dryad.2rbnzs7j2
title: Data from: Higher trait mindfulness is associated with empathy but not with emotion recognition abilities

description: Mindfulness involves an intentional and nonjudgmental attention or
 awareness of present-moment experiences. It can be cultivated by
 meditation practice or present as an inherent disposition or trait. Higher
 trait mindfulness has been associated with improved emotional skills, but
 evidence comes primarily from studies on emotion regulation. It remains
 unclear whether improvements extend to other aspects of emotional
 processing, namely the ability to recognize emotions in others. In the
 current study, 107 participants (Mage = 25.48 years) completed a
 measure of trait mindfulness, the Five Facet Mindfulness Questionnaire,
 and two emotion recognition tasks. These tasks required participants to
 categorize emotions in facial expressions and in speech prosody. They also
 completed an empathy questionnaire and attention tasks. We found that
 higher trait mindfulness was associated positively with empathy, but not
 with the ability to recognize emotions. In fact, Bayesian analyses
 provided substantial evidence for the null hypothesis, both for emotion
 recognition in faces and in speech. Moreover, no associations were
 observed between mindfulness and attention performance. These findings
 suggest that the positive effects of trait mindfulness on emotional
 processing do not extend to emotion recognition abilities.
DOI: 10.25934/pr00012549.0
title: Available datapackage for study 'Increasing Representation of Black Communities in SARS-CoV-2 Serosurveys by Understanding Barriers and Motivations for Participation (Represent ATL)'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5061/dryad.wwpzgmsfz
title: Does the response of D. melanogaster males to intrasexual competitors influence sexual isolation?

description: The evolutionary consequences of phenotypic plasticity are debated. For
 example, reproductive barriers between incipient species can depend on the
 social environment, but most evidence for this comes from studies
 focussing on the effects of experiencing heterospecific individuals of the
 opposite sex. In Drosophila melanogaster, males are well known to invest
 strategically in ejaculate components and show different courtship
 behaviour when reared in the presence of male competitors. It is unknown
 whether such plasticity in response to same-sex social experience
 influences sexual isolation, so we tested this using African and
 cosmopolitan lines which show partial sexual isolation. Males were housed
 in social isolation, with homopopulation, or with heteropopulation male
 partners. We then measured their mating success, latency, and duration,
 their paternity share, and female re-mating success. Isolated males
 copulated for a shorter duration than males housed with any male partners.
 However, we found no difference in any measure between homo- or
 heteropopulation treatments. Our findings suggest that the male
 intrasexual competitive social environment does not strongly influence
 sexual isolation in D. melanogaster, and that plastic effects on
 reproductive isolation may be influenced more strongly by the experience
 of social isolation, than by the composition of individuals within
 different social environments.
DOI: 10.5061/dryad.m905qftx9
title: Insects reared out from logging residues on clear cuts in southern Sweden

description: Growing interest in harvesting logging residues for energy production will
 reduce the amount of fine (small-diameter) wood. This could pose
 a threat to saproxylic (dead-wood living) organisms. Therefore,
 we asked firstly if logging residues have a beetle fauna of
 conservation interest, and secondly which differences there are
 between different categories of logging residues.
 Samples of logging-residue wood of aspen, birch, oak and
 spruce, divided into three diameter classes ranging between 1 and
 15 cm were collected from 60 clear cuts in southern Sweden. The
 clear cuts were positioned in six different regions, where in each region
 we had one landscape which is considered a hotspot for saproxylic
 diversity and one landscape was an ordinary. Within each landscape one
 clear cut was Yonng (=one year old) and another Old (4-5 years
 old). Saproxylic beetles were then reared out from the
 samples. In total, we found 50,566 saproxylic beetles
 representing 160 species.
description: A small part of the data come from a thesis made by Lena
 Wedmo This data has been used in following additional
 publications: Jonsell, M & Hansson, J. 2007.
 Comparison of methods for sampling saproxylic beetles in fine wood. –
 Entomologica Fennica 18: 232-241.
 http://www.entomologicafennica.org/Volume18/abstracts18_232.htm
 Jonsell, M. 2008. Saproxylic beetle species in logging residues:
 which are they and which residues do they use? Norw. J. Entomol. 55,
 109–122. Jonsell, M. Widenfalk, L.A. &
 Hellqvist, S. Submitted. Substrate specificity among Diptera in decaying
 bioenergy wood: Can they be conserved by the same measures as are
 currently applied to beetles?
DOI: 10.5061/dryad.2280gb5nf
title: Use of artificial structure to enhance fish diversity in the Youjiang River, a dammed river of the Pearl River in China

description: The fragmentation and homogenization of habitats have seriously affected
 the fishery resources of the Pearl River. To protect the fishery
 resources, a new type of artificial habitat, consisting of bamboo and palm
 slices, was deployed in the Youjiang River, a tributary of the Pearl
 River, China. The results of field and laboratory experiments show that
 fish abundance, species richness and Shannon-Wiener diversity index were
 higher at the artiﬁcial habitats than at the control sites. There were no
 significant effects on fish biomass, as artiﬁcial habitats attracted more
 Cultrinae and Gobioninae individuals with smaller size. Artificial
 habitats can serve as spawning grounds for fish that produce sticky eggs
 and refuges to improve the survival rates of juvenile fishes. This study
 revealed that the new type of artiﬁcial habitat can form new habitats for
 fish in the Youjiang River.