cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/z3hr99ptxd.1
title: Dataset for the "Seasonal dynamics and environmental regulation of sessile invertebrate assemblages in natural and farmed kelp habitats" Manuscript

description: The study tested the hypothesis that seasonal and environmental variability influences the composition and relative abundance of sessile invertebrate assemblages, and that these patterns differ between habitats inside a kelp farm and natural reference sites. The study had two objectives: (i) to assess whether marine environmental conditions, including temperature, salinity, and total dissolved solids, influence the spatio-temporal patterns of sessile invertebrates at shearwater Bay kelp farm and Diaz Point native kelp forest; and (ii) to investigate seasonal dynamics in the composition and abundance of these assemblages, providing insights into their ecological roles in natural and farmed kelp systems.

Two complementary datasets were collected. The quarterly survey (QS), conducted at Diaz Point and Shearwater Bay, recorded abundance of sessile invertebrates on structures alongside environmental parameters. Counts and percentage cover were normalized to calculate relative abundances, and Redundancy Analysis (RDA) was used to assess correlations between environmental variables and assemblage composition. These data show that environmental factors, particularly temperature, salinity, and total dissolved solids, are correlated with relative abundances of key taxa, indicating their influence on community structure.

The experimental survey (ES), conducted at Shearwater Bay inside and outside the kelp farm, monitored specific quadrats (10 x 10cm) on structures (float tops, rope sides with tags, and block surfaces). Due to dense red algae growth, a semi- and later full-destructive approach was employed to accurately assess percent cover and visibility of sessile taxa. Temporal patterns in assemblage composition were analyzed using the Friedman test, revealing clear seasonal variability across sites and structure components.

These datasets provide detailed records of species identity, abundance, percent cover, environmental parameters, and structure-specific observations. They can be used to explore seasonal dynamics, environmental drivers, and habitat-specific assemblage patterns. Researchers can reproduce the surveys by deploying similar structures, applying fixed quadrats, recording environmental variables, and using comparable statistical approaches. Percent cover, visibility scores, and normalized abundances allow interpretation of community composition and ecological responses to environmental variability in natural and farmed kelp systems.
DOI: 10.5281/zenodo.17738091
title: RAPID Sandbox

description: RAPID comes along with a set of test files based on a synthetic experiment called the Sandbox. More information is available in SANDBOX.md.
DOI: 10.15468/dl.t7dn6y
title: Occurrence Download

description: A dataset containing 23380 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "Geometry POLYGON((5.39802 47.49782,5.46747 47.49782,5.46747 47.53655,5.39802 47.53655,5.39802 47.49782))"
 ]
}

 The dataset includes 23380 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012145-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/3zxktfyzxh
title: Factors affecting cholera incidence in Mashonaland East, Zimbabwe: a hybrid SEM-ANN analytical approach

description: Data from a survey done for cholera incidence in Zimbabwe.
DOI: 10.17632/3zxktfyzxh.1
title: Factors affecting cholera incidence in Mashonaland East, Zimbabwe: a hybrid SEM-ANN analytical approach

description: Data from a survey done for cholera incidence in Zimbabwe.
DOI: 10.17632/bc52f5vzgb.1
title: 111

description: support files
DOI: 10.17632/vpsbw9c5w8
title: An adaptive straw returning strategy proves more effective in improving soil quality and increasing yields of newly reclaimed red croplands

description: To evaluate the effects of different straw return practices on soil quality and crop yield in newly reclaimed farmland, fifteen fixed experimental plots were established on eroded sloping land in 2017. Five management treatments were implemented, including three straw mulching practices—no-till mulching (NM), trench-applied mulching (TM), and surface straw mulching (SM)—as well as two control treatments: bare soil (BS) and conventional tillage (CT). The experiment was conducted from 2018 to 2023, encompassing five consecutive rapeseed–peanut rotation cycles (T1–T5). After each crop harvest, surface soil samples (0–20 cm) were randomly collected from each treatment plot.
DOI: 10.17632/vpsbw9c5w8.1
title: An adaptive straw returning strategy proves more effective in improving soil quality and increasing yields of newly reclaimed red croplands

description: To evaluate the effects of different straw return practices on soil quality and crop yield in newly reclaimed farmland, fifteen fixed experimental plots were established on eroded sloping land in 2017. Five management treatments were implemented, including three straw mulching practices—no-till mulching (NM), trench-applied mulching (TM), and surface straw mulching (SM)—as well as two control treatments: bare soil (BS) and conventional tillage (CT). The experiment was conducted from 2018 to 2023, encompassing five consecutive rapeseed–peanut rotation cycles (T1–T5). After each crop harvest, surface soil samples (0–20 cm) were randomly collected from each treatment plot.
DOI: 10.17632/cbtmmrvrmh.1
title: Climate Change Adaptation Data

description: This dataset reflects the two methodological approaches used in the study. Quantitative rainfall and temperature data were analysed to illustrate climatic variability and extreme events in the study area, as well as their impacts on local communities. The qualitative data, drawn from interviews, focus group discussions, and questionnaires, explored socio-economic and environmental conditions, perceptions of climate risks, adaptation strategies, and the roles of local government. Together, the quantitative and qualitative findings informed the development of a climate change adaptation framework for the study area.
DOI: 10.17863/cam.119604
title: Research data supporting "On the role of athermal and isothermal omega on the stress induced martensitic transformation in Ti-18Nb (at.%)"

description: Data from associated publication. All testing parameters to accompany sxrd data (load/temperature etc.) are given in the accompanying .csv file labelled GDA log.
DOI: 10.17632/bhgn4bn5ks
title: Gameiro & Foskolou et al, Nature Communications

description: For description of the data please refer to the manuscript Gameiro and Foskolou et al., Nature Communications 2025
DOI: 10.17632/bhgn4bn5ks.1
title: Gameiro & Foskolou et al, Nature Communications

description: For description of the data please refer to the manuscript Gameiro and Foskolou et al., Nature Communications 2025
DOI: 10.15468/dl.h2pnjz
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cuthona perca"
 ]
}

 The dataset includes 89 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012146-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/hh9nftmg57
title: TASK-SPECIFIC SELF-EFFICACY AS A PREDICTOR OF COLLEGE ALGEBRA SUCCESS: AN EXPLORATORY STUDY AT AN HBCU

description: Data shown is the students' final grade, the score they indicated on the topics determined to be at that class level (109 - Intermediate Alg), (117 - College Algebra), (118 Trig), (151 Calculus), columns headed by 1, 2 etc are the scores they gave in response to that question 1 - Could not do it, 5 Could do it right now with 2, 3, 4 being given less and less support.
DOI: 10.17632/hh9nftmg57.1
title: TASK-SPECIFIC SELF-EFFICACY AS A PREDICTOR OF COLLEGE ALGEBRA SUCCESS: AN EXPLORATORY STUDY AT AN HBCU

description: Data shown is the students' final grade, the score they indicated on the topics determined to be at that class level (109 - Intermediate Alg), (117 - College Algebra), (118 Trig), (151 Calculus), columns headed by 1, 2 etc are the scores they gave in response to that question 1 - Could not do it, 5 Could do it right now with 2, 3, 4 being given less and less support.
DOI: 10.17632/4b34bcm322
title: Poyang Lake Basin Meteorological Data Set（Original data）

description: 1.Average temperature(TEM)：https://data.tpdc.ac.cn
2.potential evapotranspiration(PET)：https://data.tpdc.ac.cn
3.Soil moisture：http://esa-soilmoisture-cci.org
DOI: 10.17632/4b34bcm322.1
title: Poyang Lake Basin Meteorological Data Set（Original data）

description: 1.Average temperature(TEM)：https://data.tpdc.ac.cn
2.potential evapotranspiration(PET)：https://data.tpdc.ac.cn
3.Soil moisture：http://esa-soilmoisture-cci.org
DOI: 10.15468/dl.fehv5p
title: Occurrence Download

description: A dataset containing 514 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chrysothemis melittifolia"
 ]
}

 The dataset includes 514 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012148-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/bmhd636ck4
title: Jiepai forest plots

description: The dataset presented here contains both raw and analyzed data related to the research article 'Enhancing Species Diversity through Mixed Plantations of Native Tree Species Mytilaria laosensis and Michelia macclurei in Southern China' [1]. The dataset, which consists of two sheets, is provided as a single .xlsx file titled 'Jiepai forest plots.' The first sheet includes six survey variables: forest types, origin, tree species, diameter at breast height (DBH), ground diameter (GD), crown width, and survival states. The second sheet contains four diversity indices for each 10 m × 10 m subplot: species richness (SR), the number of individuals (N), Shannon-Wiener index (H'), and Pielou evenness index (EH).
DOI: 10.17632/bmhd636ck4.1
title: Jiepai forest plots

description: The dataset presented here contains both raw and analyzed data related to the research article 'Enhancing Species Diversity through Mixed Plantations of Native Tree Species Mytilaria laosensis and Michelia macclurei in Southern China' [1]. The dataset, which consists of two sheets, is provided as a single .xlsx file titled 'Jiepai forest plots.' The first sheet includes six survey variables: forest types, origin, tree species, diameter at breast height (DBH), ground diameter (GD), crown width, and survival states. The second sheet contains four diversity indices for each 10 m × 10 m subplot: species richness (SR), the number of individuals (N), Shannon-Wiener index (H'), and Pielou evenness index (EH).
DOI: 10.17632/yywfwj7d8y
title: Table 1

description: Operational Research of Variables
DOI: 10.15468/dl.j5wd6p
title: Occurrence Download

description: A dataset containing 374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Impatiens walleriana"
 ]
}

 The dataset includes 374 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012149-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/yywfwj7d8y.1
title: Table 1

description: Operational Research of Variables
DOI: 10.5281/zenodo.17737617
title: Colab validation outputs — reproducible cosmology pipeline DELIVERABLE

description: Description

Reproducible deliverable for a cosmology analysis pipeline containing processed catalogs, Monte Carlo outputs, null test results, figures, and integrity metadata. The archive enables independent verification of all distributed artifacts without rerunning the full notebook. The corresponding author is Avelino Díaz with ORCID 0009-0002-9974-3746.

 

Contents





Main archive: colab_validation_outputs_DELIVERABLE.zip (verified SHA256 below).




Included artifacts: cleaned catalogs; psi_draws_pub.npz; cov_matrix_pub.npy; shuffle arrays and shuffle_stats_pub.json; SI figures fig_psi_z_median_68ci.png, fig_I_z_normalized.png, fig_shuffle_shape_hist.png; outputs_hashes.json; integrity_report.json; PROVISIONAL_README.txt; FINAL_zip_meta.json.



 

Verification and reproducibility





ZIP SHA256: 67c6bda92fa7bfed48f3651c5b763d5379a51b1c28431a06e3eaa3ecc6d65653.




Per file digests: All files include SHA256 and size entries in outputs_hashes.json.




Integrity report: integrity_report.json lists recalculated hashes and indicates which files match the saved digests.




How to verify locally: compute sha256sum on Linux, shasum -a 256 on macOS, or Get-FileHash -Algorithm SHA256 on Windows PowerShell for the downloaded ZIP and compare to the ZIP SHA above; inspect outputs_hashes.json and integrity_report.json for per file checks.



 

Reproducibility parameters





Key cuts and selections: SNR ≥ 3; NFILT ≥ 4; χ² ≤ 500; upper flux cut at the 99.5 percentile.




Monte Carlo and null tests: Monte Carlo draws N_DRAW = 5000 with a validation run at 1000; null-test permutations N_SHUFFLES = 5000.




Conversions and definitions: UV to SFR conversion constants K_UV = 1.15×10⁻²⁸ and A_UV = 1.5. I(z) computed as the integral of ψ(z) normalized by its maximum.




Notebook availability: the Colab notebook used to generate these outputs is available on request or via the project repository referenced in related identifiers.



 

Metadata and license





Suggested title: Colab validation outputs — reproducible cosmology pipeline DELIVERABLE.




Suggested license: Data CC BY 4.0; code MIT or BSD if included.




Keywords: cosmology; reproducibility; Monte Carlo; photometric redshift; star formation; pipeline.




Related identifiers: include manuscript arXiv or journal reference when available and the DOI of this deposit after publication.



 

How to cite

A. Díaz (2025). Colab validation outputs — reproducible cosmology pipeline DELIVERABLE. Zenodo. DOI: 10.5281/zenodo.17737618
description: Subject: Astronomy and Astrophysics




Alternate subject: Cosmology




Keywords: cosmology, reproducibility, photometric redshift, Monte Carlo, pipeline, catalogue, psi draws, covariance matrix, null test, data integrity, open data, star formation
DOI: 10.5281/zenodo.17737618
title: Colab validation outputs — reproducible cosmology pipeline DELIVERABLE

description: Description

Reproducible deliverable for a cosmology analysis pipeline containing processed catalogs, Monte Carlo outputs, null test results, figures, and integrity metadata. The archive enables independent verification of all distributed artifacts without rerunning the full notebook. The corresponding author is Avelino Díaz with ORCID 0009-0002-9974-3746.

 

Contents





Main archive: colab_validation_outputs_DELIVERABLE.zip (verified SHA256 below).




Included artifacts: cleaned catalogs; psi_draws_pub.npz; cov_matrix_pub.npy; shuffle arrays and shuffle_stats_pub.json; SI figures fig_psi_z_median_68ci.png, fig_I_z_normalized.png, fig_shuffle_shape_hist.png; outputs_hashes.json; integrity_report.json; PROVISIONAL_README.txt; FINAL_zip_meta.json.



 

Verification and reproducibility





ZIP SHA256: 67c6bda92fa7bfed48f3651c5b763d5379a51b1c28431a06e3eaa3ecc6d65653.




Per file digests: All files include SHA256 and size entries in outputs_hashes.json.




Integrity report: integrity_report.json lists recalculated hashes and indicates which files match the saved digests.




How to verify locally: compute sha256sum on Linux, shasum -a 256 on macOS, or Get-FileHash -Algorithm SHA256 on Windows PowerShell for the downloaded ZIP and compare to the ZIP SHA above; inspect outputs_hashes.json and integrity_report.json for per file checks.



 

Reproducibility parameters





Key cuts and selections: SNR ≥ 3; NFILT ≥ 4; χ² ≤ 500; upper flux cut at the 99.5 percentile.




Monte Carlo and null tests: Monte Carlo draws N_DRAW = 5000 with a validation run at 1000; null-test permutations N_SHUFFLES = 5000.




Conversions and definitions: UV to SFR conversion constants K_UV = 1.15×10⁻²⁸ and A_UV = 1.5. I(z) computed as the integral of ψ(z) normalized by its maximum.




Notebook availability: the Colab notebook used to generate these outputs is available on request or via the project repository referenced in related identifiers.



 

Metadata and license





Suggested title: Colab validation outputs — reproducible cosmology pipeline DELIVERABLE.




Suggested license: Data CC BY 4.0; code MIT or BSD if included.




Keywords: cosmology; reproducibility; Monte Carlo; photometric redshift; star formation; pipeline.




Related identifiers: include manuscript arXiv or journal reference when available and the DOI of this deposit after publication.



 

How to cite

A. Díaz (2025). Colab validation outputs — reproducible cosmology pipeline DELIVERABLE. Zenodo. DOI: 10.5281/zenodo.17737618
description: Subject: Astronomy and Astrophysics




Alternate subject: Cosmology




Keywords: cosmology, reproducibility, photometric redshift, Monte Carlo, pipeline, catalogue, psi draws, covariance matrix, null test, data integrity, open data, star formation
DOI: 10.15468/dl.uegn6n
title: Occurrence Download

description: A dataset containing 900 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Enaphalodes rufulus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is not null",
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 900 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012151-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qk4epx
title: Occurrence Download

description: A dataset containing 40168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Month is July",
 "StateProvince is New Brunswick",
 "Year 2024-2024"
 ]
}

 The dataset includes 40168 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012150-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/7x5g75zv3s
title: Arbuscular Mycorrhizal Fungal Composition Drives Soil Carbon Sequestration in Coastal Saltmarshes: Insights from a Tidal Flat Gradient

description: The physical and chemical properties of soil in coastal wetland.
DOI: 10.17632/7x5g75zv3s.1
title: Arbuscular Mycorrhizal Fungal Composition Drives Soil Carbon Sequestration in Coastal Saltmarshes: Insights from a Tidal Flat Gradient

description: The physical and chemical properties of soil in coastal wetland.
DOI: 10.17632/fyswf2rs4c
title: EQCM_LMWOAs_Data

description: This dataset, includings raw and processed data, supports the study “Real-time and in-situ investigation of the dissolution kinetics of manganese(III/IV) (hydr)oxides induced by low-molecular-weight organic acids using electrochemical quartz crystal microbalance (EQCM).”
DOI: 10.17632/fyswf2rs4c.1
title: EQCM_LMWOAs_Data

description: This dataset, includings raw and processed data, supports the study “Real-time and in-situ investigation of the dissolution kinetics of manganese(III/IV) (hydr)oxides induced by low-molecular-weight organic acids using electrochemical quartz crystal microbalance (EQCM).”
DOI: 10.17632/zxhjhs4xkv
title: Specnuezhenide from Ligustrum sinense Lour. inhibits liver cancer by suppressing glycolysis: a multi-omics study
DOI: 10.17632/zxhjhs4xkv.1
title: Specnuezhenide from Ligustrum sinense Lour. inhibits liver cancer by suppressing glycolysis: a multi-omics study
DOI: 10.17632/nyszprvctk
title: Reddit Mental Health Data

description: Dataset were extracted using Python Reddit API Wrapper (PRAW) and Pushshift API, facilitating comprehensive access to Reddit’s official data streams and historical archives. A sampling strategy was employed wherein, for each selected subreddit, the top 200 posts ranked by number of upvotes over a one-year period were collected.
DOI: 10.17632/nyszprvctk.1
title: Reddit Mental Health Data

description: Dataset were extracted using Python Reddit API Wrapper (PRAW) and Pushshift API, facilitating comprehensive access to Reddit’s official data streams and historical archives. A sampling strategy was employed wherein, for each selected subreddit, the top 200 posts ranked by number of upvotes over a one-year period were collected.
DOI: 10.15468/dl.vjecjh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acer miaotaiense"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012152-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/k7y9hmzw4y
title: Atypical El Tor Vibrio cholerae from the second major global seventh pandemic cholera wave is endemic in Sabah, Malaysia

description: Supplementary Table of Manuscript
DOI: 10.17632/k7y9hmzw4y.1
title: Atypical El Tor Vibrio cholerae from the second major global seventh pandemic cholera wave is endemic in Sabah, Malaysia

description: Supplementary Table of Manuscript
DOI: 10.17632/dd4hw3r6dh
title: LeftInCAR: In-Vehicle Object Detection Dataset

description: This dataset was developed to support research on object detection and recognition, focusing on items forgotten inside vehicles. It captures a diverse range of real-world scenarios under different lighting conditions, both indoors and outdoors, to ensure robustness and applicability in various analytical tasks. 

The collection contains 971 high-quality images featuring everyday objects such as: 0 - smartphone, 1 - laptop, 2 - card, 3 - suitcase, 4 - wallet, 5 - backpack, 6 - clothing, 7 - keys, 8 - glasses, 9 - handbag.

The dataset is organized into two main directories (inside leftincar-data.zip):

 ➔ images/ – contains all visual samples.
 ➔ labels/ – includes YOLO-format annotation files (.txt), one per image. Images without annotations correspond to negative samples (no objects present).

An additional Python script, yolo_dataset_splitter.py, is provided to automate the division of the dataset into training, validation, and testing subsets.
The script ensures that all images are included in the output, creating empty label files where necessary for full YOLO compatibility.