cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3729784_d7
title: Additional file 7: Table S7. of CNV discovery for milk composition traits in dairy cattle using whole genome resequencing

description: QTLs covered by differential CNVRs. (XLSX 18Â kb)
DOI: 10.25592/uhhfdm.16539
title: Immersive City Scripts – Virtual Theatre of Miletus - 3D Pin Model - RFB02

description: 3D mesh in .fbx format, no textures. 3D pin used for marking Written Artefact locations in the Ancient Theatre of Miletus. <br>
<br>
----------------------------------------------------------

The interdisciplinary project RFB02 "Immersive City Scripts: Inscriptions and the Construction of Social Spaces in Miletus (Asia Minor)" investigates how inscriptions structured public spaces in the ancient city Miletus and Didyma. Part of the project is an immersive virtual reality application of the Milesian theatre, where you can explore and experience the inscriptions with the help of reconstructions, different light settings and agents in the virtual space. The project belongs to the Research Field B “Inscribing Spaces” of the first phase (2019-2025) of the Cluster of Excellence “Understanding Written Artefacts”.


 RFB02: Immersive City Scripts: Inscriptions and the Construction of Social Spaces in Miletus (Asia Minor) 
 Project website department of Archaeology
 Project website department of Informatics, Human-Computer Interaction
 Project Website of the Miletus excavation
description: The research for this project set was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – EXC 2176 'Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures', project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at University of Hamburg.
DOI: 10.25592/uhhfdm.16540
title: Immersive City Scripts – Virtual Theatre of Miletus - Unity Infopanel Template - RFB02

description: Unity Written Artefacts Infopanel template for displaying text and images inside the Virtual Theatre of Miletus. The template contains sample text and content and is provided as a Unity Prefab and uses only Unity Components. Additional Scripts for interacting with the panel are removed - depending on the use case and platform, custom scripts have to be created and added. The template is packed inside a .zip-file and contains two versions of the prefab - one using UHH fonts and one using Unity fonts. It also includes a sample image and Unity .meta-files. After unpacking, copy all files from the folder into the Unity Asset folder to use the template.<br>
<br>
----------------------------------------------------------

The interdisciplinary project RFB02 "Immersive City Scripts: Inscriptions and the Construction of Social Spaces in Miletus (Asia Minor)" investigates how inscriptions structured public spaces in the ancient city Miletus and Didyma. Part of the project is an immersive virtual reality application of the Milesian theatre, where you can explore and experience the inscriptions with the help of reconstructions, different light settings and agents in the virtual space. The project belongs to the Research Field B “Inscribing Spaces” of the first phase (2019-2025) of the Cluster of Excellence “Understanding Written Artefacts”.


 RFB02: Immersive City Scripts: Inscriptions and the Construction of Social Spaces in Miletus (Asia Minor) 
 Project website department of Archaeology
 Project website department of Informatics, Human-Computer Interaction
 Project Website of the Miletus excavation
description: The research for this project set was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – EXC 2176 'Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures', project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at University of Hamburg.
DOI: 10.25592/uhhfdm.16537
title: Immersive City Scripts – Virtual Theatre of Miletus - 3D Reconstruction Second Roman Stage - RFB02

description: 3D mesh in .fbx format, no textures. Reconstruction of the former Second Roman Stage building (2nd century CE) including the 20th seating row of the first seating tier, second seating tier, and third seating tier of the Ancient Theatre of Miletus. <br>
<br>
----------------------------------------------------------

The interdisciplinary project RFB02 "Immersive City Scripts: Inscriptions and the Construction of Social Spaces in Miletus (Asia Minor)" investigates how inscriptions structured public spaces in the ancient city Miletus and Didyma. Part of the project is an immersive virtual reality application of the Milesian theatre, where you can explore and experience the inscriptions with the help of reconstructions, different light settings and agents in the virtual space. The project belongs to the Research Field B “Inscribing Spaces” of the first phase (2019-2025) of the Cluster of Excellence “Understanding Written Artefacts”.


 RFB02: Immersive City Scripts: Inscriptions and the Construction of Social Spaces in Miletus (Asia Minor) 
 Project website department of Archaeology
 Project website department of Informatics, Human-Computer Interaction
 Project Website of the Miletus excavation
description: The research for this project set was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – EXC 2176 'Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures', project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at University of Hamburg.
DOI: 10.25592/uhhfdm.16538
title: Immersive City Scripts – Virtual Theatre of Miletus - 3D Pin Model - RFB02

description: 3D mesh in .fbx format, no textures. 3D pin used for marking Written Artefact locations in the Ancient Theatre of Miletus. <br>
<br>
----------------------------------------------------------

The interdisciplinary project RFB02 "Immersive City Scripts: Inscriptions and the Construction of Social Spaces in Miletus (Asia Minor)" investigates how inscriptions structured public spaces in the ancient city Miletus and Didyma. Part of the project is an immersive virtual reality application of the Milesian theatre, where you can explore and experience the inscriptions with the help of reconstructions, different light settings and agents in the virtual space. The project belongs to the Research Field B “Inscribing Spaces” of the first phase (2019-2025) of the Cluster of Excellence “Understanding Written Artefacts”.


 RFB02: Immersive City Scripts: Inscriptions and the Construction of Social Spaces in Miletus (Asia Minor) 
 Project website department of Archaeology
 Project website department of Informatics, Human-Computer Interaction
 Project Website of the Miletus excavation
description: The research for this project set was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – EXC 2176 'Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures', project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at University of Hamburg.
DOI: 10.25592/uhhfdm.16536
title: Immersive City Scripts – Virtual Theatre of Miletus - 3D Reconstruction Second Roman Stage - RFB02

description: 3D mesh in .fbx format, no textures. Reconstruction of the former Second Roman Stage building (2nd century CE) including the 20th seating row of the first seating tier, second seating tier, and third seating tier of the Ancient Theatre of Miletus. <br>
<br>
----------------------------------------------------------

The interdisciplinary project RFB02 "Immersive City Scripts: Inscriptions and the Construction of Social Spaces in Miletus (Asia Minor)" investigates how inscriptions structured public spaces in the ancient city Miletus and Didyma. Part of the project is an immersive virtual reality application of the Milesian theatre, where you can explore and experience the inscriptions with the help of reconstructions, different light settings and agents in the virtual space. The project belongs to the Research Field B “Inscribing Spaces” of the first phase (2019-2025) of the Cluster of Excellence “Understanding Written Artefacts”.


 RFB02: Immersive City Scripts: Inscriptions and the Construction of Social Spaces in Miletus (Asia Minor) 
 Project website department of Archaeology
 Project website department of Informatics, Human-Computer Interaction
 Project Website of the Miletus excavation
description: The research for this project set was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – EXC 2176 'Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures', project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at University of Hamburg.
DOI: 10.6084/m9.figshare.c.3729784_d6.v1
title: Additional file 6: Table S6. of CNV discovery for milk composition traits in dairy cattle using whole genome resequencing

description: Functional enrichment of GO and KEGG pathway analysis of genes covered by group-specific CNVRs. (XLSX 11Â kb)
DOI: 10.15468/dl.ycdpuq
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Allium pruinatum Link ex Spreng."
 ]
}

 The dataset includes 16 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035866-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3729784_d6
title: Additional file 6: Table S6. of CNV discovery for milk composition traits in dairy cattle using whole genome resequencing

description: Functional enrichment of GO and KEGG pathway analysis of genes covered by group-specific CNVRs. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3729784_d5
title: Additional file 5: Table S5. of CNV discovery for milk composition traits in dairy cattle using whole genome resequencing

description: Functional enrichment of GO and KEGG pathway analysis of genes covered by differential CNVRs. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3729784_d5.v1
title: Additional file 5: Table S5. of CNV discovery for milk composition traits in dairy cattle using whole genome resequencing

description: Functional enrichment of GO and KEGG pathway analysis of genes covered by differential CNVRs. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3729808_d1.v1
title: Additional file 1: Table S1. of A deletion in the intergenic region upstream of Ednrb causes head spot in the rat strain KFRS4/Kyo

description: A list of KFRS4/Kyo-specific mutations found within the genomic interval identified by a linkage analysis (chr15:89.0â  94.8Â Mb in the rn5 assembly). (XLS 36Â kb)
DOI: 10.6084/m9.figshare.c.3729784_d4.v1
title: Additional file 4: Table S4. of CNV discovery for milk composition traits in dairy cattle using whole genome resequencing

description: The detailed features of genes completely or partial overlapped with differential CNVRs. (XLSX 28Â kb)
DOI: 10.15468/dl.d5hn4v
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sepia esculenta Hoyle, 1885",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 267 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035865-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14417368
title: Input files, parameters files and initial conformations of the REST2 and CMD simulations
DOI: 10.5281/zenodo.14417369
title: Input files, parameters files and initial conformations of the REST2 and CMD simulations
DOI: 10.6084/m9.figshare.c.3729730_d2.v1
title: Additional file 1: of Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome

description: a Log2-transformed and median-centered RPPA data. b Molecular classifications of the 425 Oslo2 tumors. c Pearson correlation values and corresponding p-values calculated for correlation between each molecular subtype level and each COCA cluster by giving 0/1 numerical values to the binary categorical variables. d PAM50 distribution in total number and percentage in each of the six COCA clusters. e P-values for association between each of the six COCA clusters and clinical/molecular classification of the tumors (chi-squared association test). The p-values are Bonferroni-corrected for multiple testing. f miRNAs significantly differentially expressed (Benjamini-Hochberg adjusted p-value &lt;0.01 and log2 |fold-change| &gt;1) between luminal A samples in COCA cluster 1 and COCA cluster 4. g Annotation of the 1808 genes that were correlated with the 71 miRNAs differentially expressed between luminal A tumors in COCA cluster 1 versus COCA cluster 4 (absolute Spearman correlation &gt;0.4). h Pathways enriched among the 850 genes upregulated in luminal A tumors in COCA cluster 4. i miRNAs differentially expressed between luminal A tumors in COCA cluster 1 vs COCA cluster 4 and predicted target genes that were among the proteins differentially expressed between luminal A tumors in COCA cluster 1 vs COCA cluster 4. j Comparison of the composition of RPPA-defined subtypes in luminal A tumors separated on miRNA expression. The RPPA subtype data are taken from [9].(XLSX 871 kb)
DOI: 10.6084/m9.figshare.c.3729730_d2
title: Additional file 1: of Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome

description: a Log2-transformed and median-centered RPPA data. b Molecular classifications of the 425 Oslo2 tumors. c Pearson correlation values and corresponding p-values calculated for correlation between each molecular subtype level and each COCA cluster by giving 0/1 numerical values to the binary categorical variables. d PAM50 distribution in total number and percentage in each of the six COCA clusters. e P-values for association between each of the six COCA clusters and clinical/molecular classification of the tumors (chi-squared association test). The p-values are Bonferroni-corrected for multiple testing. f miRNAs significantly differentially expressed (Benjamini-Hochberg adjusted p-value &lt;0.01 and log2 |fold-change| &gt;1) between luminal A samples in COCA cluster 1 and COCA cluster 4. g Annotation of the 1808 genes that were correlated with the 71 miRNAs differentially expressed between luminal A tumors in COCA cluster 1 versus COCA cluster 4 (absolute Spearman correlation &gt;0.4). h Pathways enriched among the 850 genes upregulated in luminal A tumors in COCA cluster 4. i miRNAs differentially expressed between luminal A tumors in COCA cluster 1 vs COCA cluster 4 and predicted target genes that were among the proteins differentially expressed between luminal A tumors in COCA cluster 1 vs COCA cluster 4. ﻿j﻿ Comparison of the composition of RPPA-defined subtypes in luminal A tumors separated on miRNA expression. The RPPA subtype data are taken from [9].(XLSX 871 kb)
DOI: 10.6084/m9.figshare.c.3729697_d3
title: Additional file 12: of Integrated analysis identifies microRNA-195 as a suppressor of Hippo-YAP pathway in colorectal cancer

description: Table S9. Enrichment analysis of predicted miR-195 targets in KEGG cell signaling pathway database. (XLS 25Â kb)
DOI: 10.6084/m9.figshare.c.3729697_d3.v1
title: Additional file 12: of Integrated analysis identifies microRNA-195 as a suppressor of Hippo-YAP pathway in colorectal cancer

description: Table S9. Enrichment analysis of predicted miR-195 targets in KEGG cell signaling pathway database. (XLS 25Â kb)
DOI: 10.6084/m9.figshare.c.3729697_d2.v1
title: Additional file 11: of Integrated analysis identifies microRNA-195 as a suppressor of Hippo-YAP pathway in colorectal cancer

description: Table S8. Seventy-one consensus target genes were summarized by 4 different target prediction algorithms. (XLS 150Â kb)
DOI: 10.6084/m9.figshare.c.3729697_d2
title: Additional file 11: of Integrated analysis identifies microRNA-195 as a suppressor of Hippo-YAP pathway in colorectal cancer

description: Table S8. Seventy-one consensus target genes were summarized by 4 different target prediction algorithms. (XLS 150Â kb)
DOI: 10.6084/m9.figshare.c.3728767_d26
title: sample information of the mouse samples

description: Sample information (SDRF file) for mouse, including their details and details of their RNA extractions
DOI: 10.6084/m9.figshare.c.3728767_d26.v1
title: sample information of the mouse samples

description: Sample information (SDRF file) for mouse, including their details and details of their RNA extractions
DOI: 10.15468/dl.ze5z7y
title: Occurrence Download

description: A dataset containing 11164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ciona intestinalis (Linnaeus, 1767)"
 ]
}

 The dataset includes 11164 records from 179 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035867-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3726193_d8
title: Additional file 8 of Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite

description: Datasets for constructing the miRNA-disease association prediction models. Four datasets such as three positive sample sets “positive_miR”, “positive_HMDD” and “positive_miRcancer” and the negative sample set “negative_expression” are stored. The three positive sample sets are retrieved from the three existing databases such as miR2Disease, HMDD v2 and miRCancer, while the negative sample set was obtained via analyzing the expression of the miRNAs.This file can also be downloaded from: https://drive.google.com/open?id=0B6lH3mKdA9CSTkg2OVBPS0ZfVnM . (XLS 947 kb)
DOI: 10.6084/m9.figshare.c.3726193_d8.v1
title: Additional file 8 of Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite

description: Datasets for constructing the miRNA-disease association prediction models. Four datasets such as three positive sample sets “positive_miR”, “positive_HMDD” and “positive_miRcancer” and the negative sample set “negative_expression” are stored. The three positive sample sets are retrieved from the three existing databases such as miR2Disease, HMDD v2 and miRCancer, while the negative sample set was obtained via analyzing the expression of the miRNAs.This file can also be downloaded from: https://drive.google.com/open?id=0B6lH3mKdA9CSTkg2OVBPS0ZfVnM . (XLS 947 kb)
DOI: 10.6084/m9.figshare.c.3726193_d7.v1
title: Additional file 7 of Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite

description: The GSE accessions for extracting negative samples. There are totally 78 GSE accessions that we downloaded from the GEO database. We analyzed these files to compute the fold changes of the miRNAs according to the given platform information.This file can also be downloaded from: https://drive.google.com/open?id=0B6lH3mKdA9CSTkg2OVBPS0ZfVnM . (XLS 28 kb)
DOI: 10.6084/m9.figshare.c.3726193_d6
title: Additional file 6 of Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite

description: The miRNA-target associations. The miRNA targets were downloaded from the two databased such as the miRecords an miRTarBase. The miRNA ids were mapped according to the miRBase v21, while the genes were mapped to HGNC database records. This file can also be downloaded from: https://drive.google.com/open?id=0B6lH3mKdA9CSTkg2OVBPS0ZfVnM . (XLS 5320 kb)
DOI: 10.6084/m9.figshare.c.3726193_d7
title: Additional file 7 of Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite

description: The GSE accessions for extracting negative samples. There are totally 78 GSE accessions that we downloaded from the GEO database. We analyzed these files to compute the fold changes of the miRNAs according to the given platform information.This file can also be downloaded from: https://drive.google.com/open?id=0B6lH3mKdA9CSTkg2OVBPS0ZfVnM . (XLS 28 kb)
DOI: 10.6084/m9.figshare.c.3726193_d6.v1
title: Additional file 6 of Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite

description: The miRNA-target associations. The miRNA targets were downloaded from the two databased such as the miRecords an miRTarBase. The miRNA ids were mapped according to the miRBase v21, while the genes were mapped to HGNC database records. This file can also be downloaded from: https://drive.google.com/open?id=0B6lH3mKdA9CSTkg2OVBPS0ZfVnM . (XLS 5320 kb)
DOI: 10.6084/m9.figshare.c.3726181_d7.v1
title: Additional file 7: Table S7. of Genome evolutionary dynamics followed by diversifying selection explains the complexity of the Sesamum indicum genome

description: The ancient tandem duplicated genes located on subgenomes in S. indicum. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3726193_d5.v1
title: Additional file 5 of Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite

description: The disease-gene associations. The disease genes are listed in this file. These disease genes were obtained from the reference [56] and curated based on the DOID database and the HGNC database. This file can also be downloaded from: https://drive.google.com/open?id=0B6lH3mKdA9CSTkg2OVBPS0ZfVnM . (XLS 7220 kb)
DOI: 10.6084/m9.figshare.c.3726181_d7
title: Additional file 7: Table S7. of Genome evolutionary dynamics followed by diversifying selection explains the complexity of the Sesamum indicum genome

description: The ancient tandem duplicated genes located on subgenomes in S. indicum. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3726193_d5
title: Additional file 5 of Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite

description: The disease-gene associations. The disease genes are listed in this file. These disease genes were obtained from the reference [56] and curated based on the DOID database and the HGNC database. This file can also be downloaded from: https://drive.google.com/open?id=0B6lH3mKdA9CSTkg2OVBPS0ZfVnM . (XLS 7220 kb)
DOI: 10.6084/m9.figshare.c.3726181_d6
title: Additional file 6: Table S6. of Genome evolutionary dynamics followed by diversifying selection explains the complexity of the Sesamum indicum genome

description: Functional divergence of different classes of the members in tandem array. (XLSX 219 kb)
DOI: 10.6084/m9.figshare.c.3726181_d6.v1
title: Additional file 6: Table S6. of Genome evolutionary dynamics followed by diversifying selection explains the complexity of the Sesamum indicum genome

description: Functional divergence of different classes of the members in tandem array. (XLSX 219 kb)