cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5722385
title: Polar mesospheric clouds from the Balloon Lidar Experiment (BOLIDE) during the PMC Turbo balloon mission

description: This dataset contains BOLIDE lidar data obtained during the PMC Turbo balloon mission that was launched on 7 July 2018 from Esrange, Sweden and landed in Nunavut, Canada on 14 July 2018. The mission was designed to study small-scale atmospheric dynamics induced by breaking atmospheric gravity waves within the polar mesospheric cloud layer at ~82 km altitude. PMC Turbo floated at around 40 km altitude and carried seven digital cameras to image the polar mesospheric cloud layer and the first Rayleigh lidar to successfully operate from a balloon. The lidar data consists of volume backscatter coefficients of polar mesospheric clouds, available at 20 m vertical and 10 s temporal resolution, contained in a compressed netcdf file. The magnitude of volume backscatter coefficients scales with<br> the brightness of clouds imaged by the PMC Turbo cameras. The netcdf file further includes floating altitude, rotator angle (azimuth) as well as latitude and longitude of the lidar beam at 82 km altitude. Users are encouraged to contact us for discussion when using BOLIDE data. Data contact: natalie.kaifler@dlr.de References: PMC Turbo camera videos: https://svs.gsfc.nasa.gov/13073 NASA Space Physics Data Facility: https://cdaweb.gsfc.nasa.gov/index.html/, select PMC Turbo DLR Institute mission database: https://halo-db.pa.op.dlr.de/mission/112 Kaifler, N., Kaifler, B., Rapp, M., Fritts, D.C. The polar mesospheric cloud dataset of the Balloon Lidar Experiment BOLIDE. Earth System Science Data. In preparation. Kaifler, B., Rempel, D., Roßi, P., Büdenbender, C., Kaifler, N., and Baturkin, V.: A technical<br> description of the Balloon Lidar Experiment (BOLIDE), Atmos. Meas. Tech., 13, 5681–5695,<br> https://doi.org/10.5194/amt-13-5681-2020, 2020. Fritts, D. C., Miller, A. D., Kjellstrand, C. B., Geach, C., Williams, B. P., Kaifler, B.,<br> et al. (2019). PMC Turbo: Studying gravity wave and instability dynamics in the summer mesosphere<br> using polar mesospheric cloud imaging and profiling from a stratospheric balloon. Journal of<br> Geophysical Research: Atmospheres, 124, 6423– 6443. https://doi.org/10.1029/2019JD030298
DOI: 10.5281/zenodo.6984676
title: Data from: Carry-over effects of environmental stressors influence the life performance of brown trout

description: Here, we focused on the carry-over effects of excessive sedimentation on the early life stages of brown trout in a multiphase experiment. First, we experimentally tested the influence of fine sediments (organic matter (OM) and inorganic sand, both &lt;2.0 mm in diameter) on the metabolic rate (MO<sub>2</sub>), size, emergence, escape responses and survival of the relevant brown trout embryonic stage (egg, alevin or fry) in indoor experimental channels. Second, we mimicked the movements of parr to a more suitable habitat if available in natural rivers and transported parr to either their original or different treatments in outdoor experimental channels and remeasured their metabolic rate and size.
DOI: 10.5281/zenodo.7513795
title: Datasets for numerical Monte Carlo simulations of Diclofenac bio-degradation in a soil-water system

description: This record contains files and main instructions to repeat the numerical simulations of Diclofenac bio-degradation is a soil-water system. The text file Readme.docx contains a description of the overall content of this record, which is organized in two separate folders.
DOI: 10.5291/ill-data.st-10
title: STEREO run cycle 2018/02
DOI: 10.5291/ill-data.st-12
title: STEREO run shutdown 2018-19
DOI: 10.5291/ill-data.st-13
title: STEREO phase III run shutdown 2019-0
DOI: 10.6084/m9.figshare.21701111
title: Supplementary Material for: A Representative Percentile Chart for Prediction of Weight Loss Trend after Sleeve Gastrectomy

description: <b><i>Introduction:</i></b> It could be valuable for surgeons and patients to use one chart in different groups and evaluate weight loss during the post-surgery period. <b><i>Methods:</i></b> This retrospective study used the Iran National Obesity Surgery Database. Patients with clinically severe obesity aged 18–70 undergoing sleeve gastrectomy participated in this study. Body mass index (BMI) reduction and 5 other metrics measured over the study period were modeled using lambda-mu-sigma method. Our data were split into the train (70%) and test (30%) sets. <b><i>Results:</i></b> In this study, 1,258 patients (75% female) met the eligibility criteria to participate. Mean age and initial BMI were 36.87 ± 10.51 and 42.74 (40.37–46.36), respectively. Percentile charts for various metrics have been presented for the first 2 years after surgery. <b><i>Conclusions:</i></b> For sleeve surgery, all metrics are acceptable for clinical applications. Using the statistical view, BMI reduction is the most acceptable metric according to the lowest bias values and its variation between all the metrics.
DOI: 10.6084/m9.figshare.21923109
title: Supplementary Material for: Deep Learning-Based Segmentation of Airway Morphology from Endobronchial Optical Coherence Tomography

description: <b><i>Background:</i></b> Manual measurement of endobronchial optical coherence tomography (EB-OCT) images means a heavy workload in the clinical practice, which can also introduce bias if the subjective opinions of doctors are involved. <b><i>Objective:</i></b> We aim to develop a convolutional neural network (CNN)-based EB-OCT image analysis algorithm to automatically identify and measure EB-OCT parameters of airway morphology. <b><i>Methods:</i></b> The ResUNet, MultiResUNet, and Siamese network were used for analyzing airway inner area (Ai), airway wall area (Aw), airway wall area percentage (Aw%), and airway bifurcate segmentation obtained from EB-OCT imaging, respectively. The accuracy of the automatic segmentations was verified by comparing with manual measurements. <b><i>Results:</i></b> Thirty-three patients who were diagnosed with asthma (<i>n</i> = 13), chronic obstructive pulmonary disease (COPD, <i>n</i> = 13), and normal airway (<i>n</i> = 7) were enrolled. EB-OCT was performed in RB9 segment (lateral basal segment of the right lower lobe), and a total of 17,820 OCT images were collected for CNN training, validation, and testing. After training, the Ai, Aw, and airway bifurcate were readily identified in both normal airway and airways of asthma and COPD. The ResUNet and the MultiResUNet resulted in a mean dice similarity coefficient of 0.97 and 0.95 for Ai and Aw segmentation. The accuracy Siamese network in identifying airway bifurcate was 96.6%. Bland-Altman analysis indicated there was a negligible bias between manual and CNN measurements for Ai (bias = −0.02 to 0.01, 95% CI = −0.12 to 0.14) and Aw% (bias = −0.06 to 0.12, 95% CI = −1.98 to 2.14). <b><i>Conclusion:</i></b> EB-OCT imaging in conjunction with ResUNet, MultiResUNet, and Siamese network could automatically measure normal and diseased airway structure with an accurate performance.
DOI: 10.18140/flx/1669640
title: FLUXNET-CH4 FI-Sii Siikaneva

description: This is the FLUXNET-CH4 version of the carbon flux data for the site FI-Sii Siikaneva.
DOI: 10.18140/flx/1669701
title: FLUXNET-CH4 US-Uaf University of Alaska, Fairbanks

description: This is the FLUXNET-CH4 version of the carbon flux data for the site US-Uaf University of Alaska, Fairbanks.
DOI: 10.5281/zenodo.3629742
title: Publicly available GWAS summary statistics, harmonized and imputed to GTEx v8' variant reference

description: # harmonized and imputed GWAS summary statistics * `harmonized_imputed_gwas.tar` contains 114 publicly available GWAS traits, harmonized and imputed to GTEx v8 reference * `gwas_metadata.txt` is a table with useful information about each trait, such as: - Tag: trait name (also in the file name) - PUBMED_Paper_Link: PUBMED or publication URL (if available) - Portal: URL to web portal from which data was downloaded - Consortium: GWAS Consortium authoring the data - Sample_Size: number of individuals covered in the study - Population: individuals'ancestry (EUR, EAS, etc) - abbreviation: short name used for figures - new_abbreviation: alternative name for additional figures - Deflation: whether imputed summary statistics exhibited deflation (i.e. association p-values are lower than expected by chance. The summary statistics imputation method is conservative, and in public GWAS with few observed variants (&lt;2M), the distribution of p-values lags towards lower significance spectrums. # Data usage policy When using this data, you must acknowledge the source by citing the publication "Widespread dose-dependent effects of RNA expression and splicing on complex diseases and traits" (https://doi.org/10.1101/814350). # Disclaimer The data is provided "as is", and the authors assume no responsibility for errors or omissions. <br> The User assumes the entire risk associated with its use of these data. <br> The authors shall not be held liable for any use or misuse of the data described and/or contained herein. <br> The User bears all responsibility in determining whether these data are fit for the User's intended use. The information contained in these data is not better than the original sources from which they were derived,<br> and both scale and accuracy may vary across the data set. <br> These data may not have the accuracy, resolution, completeness, timeliness, or other characteristics<br> appropriate for applications that potential users of the data may contemplate. <br> <br> The user is responsible to comply with any data usage policy from the original GWAS studies;<br> refer to the list of traits described [here](https://www.biorxiv.org/content/10.1101/814350v1)<br> to identify their respective Consortia's requirements. <br> THE DATA IS PROVIDED WITHOUT WARRANTY OF ANY KIND,<br> EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,<br> FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.<br> IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,<br> WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,<br> OUT OF OR IN CONNECTION WITH THE DATA OR THE USE OR OTHER DEALINGS IN THE DATA.
DOI: 10.5281/zenodo.5911852
title: Beta vulgaris W357B genome

description: Beta vulgaris W357B genome assembly
DOI: 10.6084/m9.figshare.21921987
title: Supplementary Material for: Subjective Memory Complaints and Their Relationship with the Objective Cognitive Performance of Stroke Patients

description: <b><i>Introduction:</i></b> Subjective memory complaints (SMCs) are common among patients with stroke, significantly affect long-term disability, and contribute to poor functional outcomes. We explored changes in the subjective memory complaints questionnaire (SMCQ) score of stroke patients, correlations among SMCs, objective cognitive performance (OCP), and functional status. We also explored whether participants could be divided into groups based on the presence or absence of SMCs and OCP impairment, which could be related to rehabilitation outcomes. <b><i>Methods:</i></b> A total of 102 stroke patients were recruited from a single rehabilitation center. Their OCP was determined on admission. The Mini-Mental State Evaluation (MMSE), SMCQ, and modified Barthel Index (MBI) scores were obtained at admission and at discharge. These variables were compared and time and group interactions were explored. <b><i>Results:</i></b> The SMCQ score did not show consistent patterns of change among individuals. The objective cognitive function and activities of daily living consistently improved after rehabilitation. The proposed cognitive impairment classification after stroke based on SMCs and objective cognitive decline was able to predict improvement attributable to rehabilitation. <b><i>Conclusion:</i></b> Changes in SMCQ scores of stroke patients were inconsistent and varied when compared to changes in MMSE and MBI scores, indicating that it is not a reliable metric on its own. SMCs have a clinical relationship with OCP and significant emotional and motivational effects. In clinical practice, it is important to understand and consider SMCs after stroke.
DOI: 10.6084/m9.figshare.20268090
title: Species list of ground beetles in the SPEEDY project

description: List of captured ground beetle species with their assigned dispersal class (Dispersal: SW = short-winged; WD = wing-dimorphic; LW = long-winged), presence at the number of sites with low (S_Low, <em>n</em> = 27), medium (S_Med, <em>n</em> = 27) and high (S_High, <em>n</em> = 27) urbanization, average abundance in low (N_Low), intermediate (N_Med) and highly (N_High) urbanized sites, and estimated difference (<strong>β</strong>-est.) and associated p-value (P) in their abundance between low or high urbanized sites based on a negative binomial linear model. Species are listed in alphabetical order.
DOI: 10.5281/zenodo.3821156
title: S13 | EUCOSMETICS | Combined Inventory of Ingredients Employed in Cosmetic Products (2000) and Revised Inventory (2006)

description: This is the collection associated with list S13 EUCOSMETICS on the NORMAN Suspect List Exchange. https://www.norman-network.com/nds/SLE/ <strong>Combined Inventory of Ingredients Employed in Cosmetic Products (2000) and Revised Inventory (2006)</strong> Merged Cosmetics CSV (4/05/2017) CompTox EU Cosmetics List Merged Cosmetics InChIKeys (4/05/2017) The scientific committee on cosmetic products and non-food products Intended for consumers - SCCNFP/0389/00 Final and Commission Decision 2006/257/EC amending the Decision 96/335/EC. Provided by Peter von der Ohe, UBA, curated by Reza Aalizadeh, University of Athens. Update 12 May 2020: Added the source data from both reports (INCI-2000 and Decision 96/335/EC), including the function information and undefined structures.
description: Sourced from EU Reports
DOI: 10.25412/iop.11608233.v1
title: Data_ERL_Basant_Connectivity_Jan2020.xlsx

description: This dataset includes two main components: soil moisture and infiltration characterisitc. <br><br>1. Worksheet 1 has soil moisture measured from several points across a shrubland site in South Texas. Dataset includes total moisture content for individual points for depths of 100, 120 and 140 cm respectively. (details on shrub cover and soil type is included. For more information, please reach out to the manuscript authors.) Measurements were made using neutron moisture meters (Instrotek Hydroprobe, Am/Be source) <br><br>2. Worksheet 2 has dataset on infiltrability derived from rain simulations on 0.65 m X 0.65 m plots. The curve derived from this dataset was presented in the manuscript.<br>3. Worksheet 3 has field saturated hydraulic conductivity derived from points spread across 3 upland sites in South Texas shrublands and grazed pastures. Kfs was derived from beerkan (BEST, Lassabatere, 2006) infiltration tests. Data from the infiltration tests were fitted into models to derive Kfs values (refer to Bagarello et al., 2014) <br>
DOI: 10.26180/21625778.v1
title: Effects of South Australia's 2015 RTW Act on injured worker outcomes

description: This repository contains cleaning and analytical RMarkdown files, RProject file, and analysable data from our study on the RTW Act, which replaced South Australia's workers' compensation system. <br> Analysable data are aggregations of individual-level claims data. We are unable to include the individual-level claims data because they contain identifiable information. <br> THIS IS JUST A PLACEHOLDER. DATA AND CODE FILES WILL BE MADE AVAILABLE ONCE OUR PARTNERS HAVE HAD A CHANCE TO SEE AND COMMENT ON FINDINGS.
DOI: 10.5281/zenodo.3383148
title: Replication package for the paper: "Technical Debt's State of Practice on Stack Overflow: a Preliminary Study"

description: This is the replication package for the paper "Technical Debt’s State of Practice on Stack Overflow: a Preliminary Study", published (in Portuguese) in the preliminary results track of SBQS, the Brazilian Symposium on Software Quality. We provide the data for all steps of our methodology and final analysis. Each file is numbered, indicating the order in which they were produced in our study.
DOI: 10.5281/zenodo.6365228
title: Event-based landslide susceptibility models (Styrian Basin, Austria)

description: <strong>Landslide susceptibility models</strong> Landslide susceptibility modes are based on rainfall-triggered landslide events in the Styrian basin, Austria, in 2009 and 2014. Landslide susceptibility models are generalized additive models (GAM). <em>Note: Information on the exact location of landslides has been obscured.</em> <br> <strong>Uncertainty</strong> Posterior simulations of the coefficients using a simple Metropolis Hastings sampler and a Gaussian approximation are available for GAM-Spatial and GAM-SM. <strong>Overview of landslide susceptibility models</strong> <strong>GAM</strong> <strong>Variables</strong> GAM-Co land surface variables, meteorological variables, geology, LULC GAM-SM GAM-Co, soil moisture GAM-SM+TC GAM-SM, five-day rainfall &gt; 80 mm top-coded GAM-Spatial GAM-SM+TC, Gaussian process smoother
description: These data were generated within the Eastern Alpine Slope Instabilities under Climate Change (EASICLIM) project funded by the Austrian Climate Research Program (ACRP), grant number KR16AC0K13160.
DOI: 10.5281/zenodo.6503338
title: Destructive potential of planetary meteotsunami waves: ATAL ocean model results

description: Based on the well-documented Hunga Tonga–Hunga Ha'apai volcano explosive eruption on 15 January 2022, we developed the "Atmospheric Tsunami Associated with Lamb waves" or ATAL ocean model and performed 12 realistic and process oriented numerical simulations to assess the sea-level hazards posed by planetary meteotsunami waves. Here, we provide the ATAL model results of maximum sea-levels during day 1 and day 2 after the eruption for: - the baseline simulation: trying to reproduce the event as realistically as possible - the 10 resonance simulations (_r_): trying to derive the speed of the Lamb waves which will generate the maximum resonance (i.e., Proudman resonance) in the ocean basins by dividing the baseline speed by r = 1.25, 1.40, 1.50, 1.60, 1.65, 1.75, 2.00, 3.00, 4.00, 5.00. The full Proudman resonance was obtained for r = 1.50 - the amplification simulation (_amp_): trying to match the Proudman resonance amplification by multiplying by 10 the Lamb waves amplitudes
DOI: 10.5281/zenodo.7387075
title: Radiative transfer calculation results for Arctic cirrus

description: Data of the figure content from the radiative transfer calculations in the publication Marsing, Meerkötter et al: Investigating the radiative effect of Arctic cirrus measured in situ during the winter 2015/2016 Preprint DOI: https://doi.org/10.5194/acp-2022-395
DOI: 10.5281/zenodo.7421730
title: Large-area periodically-poled lithium niobate wafer stacks optimized for high-energy narrowband terahertz generation - Dataset

description: Dataset for the publication "Large-area periodically-poled lithium niobate wafer stacks optimized for high-energy narrowband terahertz generation".
DOI: 10.5517/cc4xmqc
title: CCDC 146683: Experimental Crystal Structure Determination

description: Related Article: P.Schoenholzer, J.J.Daly, M.Hennig|2000|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21517017
title: Supplementary Material for: Rapid emergence of appetite and hunger resulting in weight gain and improvement of eating disorder symptomatology during and after short-term off-label metreleptin treatment of a patient with anorexia nervosa

description: Off-label treatment of a 15-year-old female patient with anorexia nervosa with human recombinant leptin (metreleptin) for nine days was associated with self-reported increments of appetite and hunger resulting in rapid weight gain, substantial improvement of eating disorder cognitions and of depression. The results further substantiate the effects of metreleptin on both AN and depression. We contrast these results with the widespread view that leptin is an anorexigenic hormone. Randomized controlled trials are warranted to confirm the described effects.
DOI: 10.6084/m9.figshare.21922113
title: Supplementary Material for: BRAF<sup>V600E</sup> Expression Is Homogenous and Associated with Nonrecurrent Disease and Better Survival in Primary Melanoma

description: <b><i>Background:</i></b> Superficial spreading melanomas (SSMs) are the most common type of melanoma and cause the majority of skin cancer deaths. More than 50% of cases harbor a mutation in the BRAF gene that activates the mitogen-activated protein kinase (MAPK) cancer signaling pathway. BRAF<sup>V600E</sup> is the most common BRAF mutation, and it represents an important biomarker that guides treatment selection. However, the relationship between the <i>BRAF</i><sup><i>V600E</i></sup> gene expression and intratumoral protein distribution, on one side, and clinicopathological factors and patient outcomes, on the other, is not fully described. Additionally, whether MAPK cancer signaling activation in melanoma is due to increased biochemical activity of BRAF<sup>V600E</sup>, increased mRNA levels, or both requires further investigation. Here, we addressed these questions by examining expression patterns of BRAF<sup>V600E</sup> in primary treatment-naive melanomas and correlating them to clinicopathological factors and patient outcomes. <b><i>Methods:</i></b> In 166 SSM cases, we performed immunohistochemical staining to investigate the protein expression of BRAF<sup>V600E</sup>, and we measured BRAF mRNA levels using NanoString nCounter system. <b><i>Results:</i></b> Ninety-seven (49%) melanomas stained positive for BRAF<sup>V600E</sup>, with nearly 100% intratumoral homogeneity observed. Positive BRAF<sup>V600E</sup> expression was significantly associated with nonrecurrent disease and was found to be an independent predictor of better prognosis in univariate and multivariable analyses. Furthermore, presence of tumor-infiltrating lymphocytes, sentinel lymph node biopsy negativity, and low Breslow thickness were all independent predictors of better prognosis. We observed no difference in the BRAF mRNA levels in BRAF<sup>V600E</sup>-negative and BRAF<sup>V600E</sup>-positive melanomas, respectively. Validation in a larger publicly available cohort confirmed that there is only a weak correlation (Spearman 0.4) between BRAF<sup>V600E</sup> mRNA and protein levels and no differences in mRNA between BRAF<sup>V600E</sup> mutated and non-mutated patients. <b><i>Conclusion:</i></b> Our findings indicated that BRAF<sup>V600E</sup> is homogeneously present throughout the whole tumor and is associated with nonrecurrent disease and better survival in primary melanoma. We also showed that BRAF<sup>V600E</sup> mutation does not result in higher transcriptional levels, suggesting that activation of the MAPK signaling pathway in BRAF<sup>V600E</sup> mutated patients can be attributed to the increased biochemical activity caused by the mutation.