cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13759406
title: Leaf-wood annotated tropical tree point clouds from terrestrial laser scanning

description: This dataset was used for the analysis of the following publication:

Van den Broeck, W.A.J., Terryn, L., Chen, S., Cherlet, W., Cooper Z.T., Calders, K. (2025) Pointwise deep learning for leaf-wood segmentation of tropical tree point clouds from terrestrial laser scanning, ISPRS Journal of Photogrammetry and Remote Sensing, 227 (366-382), https://doi.org/10.1016/j.isprsjprs.2025.06.023

Any use of this dataset should cite the paper above (Creative Commons Attribution 4.0 International Public License).

Contact: wouter.vandenbroeck@ugent.be

----------------------------------------------------------------------------------------------

Dataset description:

Dataset containing 148 manually leaf-wood annotated tropical tree point clouds. Point clouds were collected with a terrestrial laser scanner (RIEGL VZ-400) in northeastern Australia.

The tree point clouds are given as .txt files, with the first three columns being the local x,y,z coordinates (z=height). The fourth column is the label (0 = leaf, 1 = wood). The trees are organised in a train, validation and test folder, to train and evaluate machine/deep learning models.

Tee species information and more information on the plots can be found in the excel file 'additional_tree_and_plot_info.xlsx'. 

Code repository:

https://github.com/qforestlab/leaf-wood-segmentation-with-deep-learning
DOI: 10.5281/zenodo.15737942
title: dataset of "Electrically-gated laser-induced spin dynamics in magneto-electric iron garnet at room temperature"

description: This .zip archive contains all raw data and Python scripts used for the paper "Electrically-gated laser-induced spin dynamics in magneto-electric iron garnet at room temperature".
DOI: 10.15468/dl.h8mftq
title: Occurrence Download

description: A dataset containing 468 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is NZL",
 "TaxonKey is Procellaria parkinsoni G.R.Gray, 1862"
 ]
}

 The dataset includes 468 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068687-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13759407
title: Leaf-wood annotated tropical tree point clouds from terrestrial laser scanning

description: This dataset was used for the analysis of the following publication:

Van den Broeck, W.A.J., Terryn, L., Chen, S., Cherlet, W., Cooper Z.T., Calders, K. (2025) Pointwise deep learning for leaf-wood segmentation of tropical tree point clouds from terrestrial laser scanning, ISPRS Journal of Photogrammetry and Remote Sensing, 227 (366-382), https://doi.org/10.1016/j.isprsjprs.2025.06.023

Any use of this dataset should cite the paper above (Creative Commons Attribution 4.0 International Public License).

Contact: wouter.vandenbroeck@ugent.be

----------------------------------------------------------------------------------------------

Dataset description:

Dataset containing 148 manually leaf-wood annotated tropical tree point clouds. Point clouds were collected with a terrestrial laser scanner (RIEGL VZ-400) in northeastern Australia.

The tree point clouds are given as .txt files, with the first three columns being the local x,y,z coordinates (z=height). The fourth column is the label (0 = leaf, 1 = wood). The trees are organised in a train, validation and test folder, to train and evaluate machine/deep learning models.

Tee species information and more information on the plots can be found in the excel file 'additional_tree_and_plot_info.xlsx'. 

Code repository:

https://github.com/qforestlab/leaf-wood-segmentation-with-deep-learning
DOI: 10.5281/zenodo.15737941
title: dataset of "Electrically-gated laser-induced spin dynamics in magneto-electric iron garnet at room temperature"

description: This .zip archive contains all raw data and Python scripts used for the paper "Electrically-gated laser-induced spin dynamics in magneto-electric iron garnet at room temperature".
DOI: 10.6084/m9.figshare.29178932
title: Decoding Phytophthora meadii (McRae): The first genomic insights into the arecanut fruit rot pathogen

description: Phytophthora meadii is an oomycetic pathogen that is destructive to economically important tropical crops. The impact of crop loss in arecanut plantations caused by this phytopathogen is increasing every year. Hence, the study integrated short and long-read sequencing technologies to provide the first genomic insights on the highly virulent P. meadii P19 isolate from the arecanut fruit rot disease hotspot region. The assembled genome consists of 439 scaffolds and is 58.74 Mb long. Furthermore, the sequenced mycelial transcriptome of P. meadii was assembled into 27,902 transcripts and used as transcriptional evidence for gene prediction. Using extensive bioinformatics resources, we present here the following genomic features predicted from the assembled genome: (i) protein-coding and non-coding genes, (ii) RxLR and CRN effectors, (iii) gene dense and sparse regions, (iv) carbohydrate-active enzymes, (v) gene orthologous groups, (vi) genes under positive selection, and (viii) evidence for horizontal gene transfer. The high-coverage reference genome will undoubtedly benefit researchers in exploring and manipulating the pathogenic characteristics of P. meadii.
DOI: 10.6084/m9.figshare.29178932.v1
title: Decoding Phytophthora meadii (McRae): The first genomic insights into the arecanut fruit rot pathogen

description: Phytophthora meadii is an oomycetic pathogen that is destructive to economically important tropical crops. The impact of crop loss in arecanut plantations caused by this phytopathogen is increasing every year. Hence, the study integrated short and long-read sequencing technologies to provide the first genomic insights on the highly virulent P. meadii P19 isolate from the arecanut fruit rot disease hotspot region. The assembled genome consists of 439 scaffolds and is 58.74 Mb long. Furthermore, the sequenced mycelial transcriptome of P. meadii was assembled into 27,902 transcripts and used as transcriptional evidence for gene prediction. Using extensive bioinformatics resources, we present here the following genomic features predicted from the assembled genome: (i) protein-coding and non-coding genes, (ii) RxLR and CRN effectors, (iii) gene dense and sparse regions, (iv) carbohydrate-active enzymes, (v) gene orthologous groups, (vi) genes under positive selection, and (viii) evidence for horizontal gene transfer. The high-coverage reference genome will undoubtedly benefit researchers in exploring and manipulating the pathogenic characteristics of P. meadii.
DOI: 10.15468/dl.r6rk36
title: Occurrence Download

description: A dataset containing 269 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is NZL",
 "OccurrenceStatus is Present",
 "TaxonKey is Pterodroma axillaris (Salvin, 1893)"
 ]
}

 The dataset includes 269 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068688-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15738042
title: mRSubLoc: A novel multi-label learning  framework integrating RNA large language  model for mRNA subcellular localization
DOI: 10.5281/zenodo.15738043
title: mRSubLoc: A novel multi-label learning  framework integrating RNA large language  model for mRNA subcellular localization
DOI: 10.5281/zenodo.15738016
title: Spanish consumer survey about Anisakis risk perception

description: Survey distributed to spanish consumers during 2024 summer about food risk perception in fish product and a pre and post assessment after message exposure about anisakis 
description: Survey in Spanish
DOI: 10.5281/zenodo.15738017
title: Spanish consumer survey about Anisakis risk perception

description: Survey distributed to spanish consumers during 2024 summer about food risk perception in fish product and a pre and post assessment after message exposure about anisakis 
description: Survey in Spanish
DOI: 10.7910/dvn/wxzser
title: Listening with Our Eyes: A Phenomenology of Subtitled Interpreting Pedagogy

description: This study investigates the sensory and pedagogical transformations brought about by AI-generated English subtitles in a full-semester Mandarin-to-English interpreting course involving 88 undergraduate students. Drawing on phenomenology of practice and hermeneutic analysis, the study explores how this visual-auditory interface reconfigures students' interpretive listening processes. Through teaching journals, classroom observations, subtitle text analysis, and student feedback, this research reveals a marked shift from auditory to visual reliance—a phenomenon termed "visual listening." The instructor's pedagogical strategies evolved in response, incorporating deliberate subtitle delays and no-subtitle drills to restore auditory primacy. The findings indicate that AI subtitles act not merely as learning aids but as epistemic agents reshaping perception, attention, and instructional design. The study offers insights into the sensory politics of interpreter education in the age of AI and proposes a framework for reflective integration of subtitling technologies in interpreter training.
description: The attached documents—教師教學日誌 (Instructor’s Teaching Journal), 課堂觀察記錄 (Classroom Observation Logs), AI字幕文本分析 (AI Subtitle Analysis), and 學生反饋樣本 (Student Feedback Samples)—represent condensed results extracted from a significantly larger raw dataset gathered over the course of an 18-week semester. These materials have been carefully selected and anonymized to illustrate key pedagogical phenomena discussed in the manuscript, including the emergence of “visual listening,” perceptual shifts in attention, and student reception to various subtitle-mediated interventions. Full data logs, transcription protocols, and source recordings remain on file with the primary researcher and are available upon editorial request.
DOI: 10.60893/figshare.sss.29251871
title: 02009-07

description: Valence band of Carrara marble powder
DOI: 10.60893/figshare.sss.29251871.v1
title: 02009-07

description: Valence band of Carrara marble powder
DOI: 10.60893/figshare.sss.29251874
title: 02009-06

description: O KLL of Carrara marble powder
DOI: 10.60893/figshare.sss.29251874.v1
title: 02009-06

description: O KLL of Carrara marble powder
DOI: 10.15468/dl.6j9x3w
title: Occurrence Download

description: A dataset containing 3224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Benin",
 "TaxonKey is Monotes kerstingii Gilg"
 ]
}

 The dataset includes 3224 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065974-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xn4eb4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.398697 -32.337792, 148.398697 -32.342283, 148.396451 -32.342283, 148.396451 -32.349021, 148.398697 -32.349021, 148.398697 -32.344529, 148.403189 -32.344529, 148.403189 -32.342283, 148.405435 -32.342283, 148.405435 -32.337792, 148.398697 -32.337792))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065975-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26565681
title: Additional file 1 of Prevalence and risk factors for tobacco, khat, and alcohol consumption among high school students in Ethiopia

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26565558
title: Additional file 2 of Role of mitochondrial metabolic disorder and immune infiltration in diabetic cardiomyopathy: new insights from bioinformatics analysis

description: Additional file 2: Table S1. Data cohort characteristics.
DOI: 10.6084/m9.figshare.26565561
title: Additional file 3 of Role of mitochondrial metabolic disorder and immune infiltration in diabetic cardiomyopathy: new insights from bioinformatics analysis

description: Additional file 3: Table S2. Results of GSEA analysis.
DOI: 10.6084/m9.figshare.26565576
title: Additional file 8 of Role of mitochondrial metabolic disorder and immune infiltration in diabetic cardiomyopathy: new insights from bioinformatics analysis

description: Additional file 8: Table S7. Hub MitoDEGs regulated by TF.
DOI: 10.6084/m9.figshare.26565579
title: Additional file 9 of Role of mitochondrial metabolic disorder and immune infiltration in diabetic cardiomyopathy: new insights from bioinformatics analysis

description: Additional file 9: Table S8. Hub MitoDEGs regulated by miRNAs.
DOI: 10.6084/m9.figshare.26651811
title: Additional file 1 of Maternal exposure to nano-titanium dioxide impedes fetal development via endothelial-to-mesenchymal transition in the placental labyrinth in mice

description: Additional file 1. Table S1: Organ-weight-to-body-weight ratios of maternal mice.
DOI: 10.6084/m9.figshare.26651811.v1
title: Additional file 1 of Maternal exposure to nano-titanium dioxide impedes fetal development via endothelial-to-mesenchymal transition in the placental labyrinth in mice

description: Additional file 1. Table S1: Organ-weight-to-body-weight ratios of maternal mice.
DOI: 10.6084/m9.figshare.26651814
title: Additional file 2 of Maternal exposure to nano-titanium dioxide impedes fetal development via endothelial-to-mesenchymal transition in the placental labyrinth in mice

description: Additional file 2. Table S2 &S3: Mouse and human gene-specific primers used in qPCR.
DOI: 10.6084/m9.figshare.26651814.v1
title: Additional file 2 of Maternal exposure to nano-titanium dioxide impedes fetal development via endothelial-to-mesenchymal transition in the placental labyrinth in mice

description: Additional file 2. Table S2 &S3: Mouse and human gene-specific primers used in qPCR.
DOI: 10.6084/m9.figshare.26565681.v1
title: Additional file 1 of Prevalence and risk factors for tobacco, khat, and alcohol consumption among high school students in Ethiopia

description: Supplementary Material 1
DOI: 10.15468/dl.j86su2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.542428 -32.337792, 148.542428 -32.344529, 148.544674 -32.344529, 148.544674 -32.337792, 148.542428 -32.337792))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065977-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26565576.v1
title: Additional file 8 of Role of mitochondrial metabolic disorder and immune infiltration in diabetic cardiomyopathy: new insights from bioinformatics analysis

description: Additional file 8: Table S7. Hub MitoDEGs regulated by TF.
DOI: 10.5281/zenodo.13318960
title: D-PLACE dataset derived from 'Global Multi-resolution Terrain Elevation Data 2010'

description: Cite the source of the dataset as:




Global Multi-resolution Terrain Elevation Data courtesy of the U.S. Geological Survey (Downloaded 14 Jul 2014)
DOI: 10.6084/m9.figshare.26565564.v1
title: Additional file 4 of Role of mitochondrial metabolic disorder and immune infiltration in diabetic cardiomyopathy: new insights from bioinformatics analysis

description: Additional file 4: Table S3. GO enrichment analyses of DEGs from GSE4745, GSE5606 and GSE6880.
DOI: 10.6084/m9.figshare.26565582
title: Additional file 10 of Role of mitochondrial metabolic disorder and immune infiltration in diabetic cardiomyopathy: new insights from bioinformatics analysis

description: Additional file 10: Table S9. Infiltration of immune cell types compared between the DCM and CON.
DOI: 10.6084/m9.figshare.26591588
title: Additional file 1 of Temporal changes in characteristics and external validity of randomized controlled trials in older people from 2012 to 2019

description: Additional file 1.
DOI: 10.6084/m9.figshare.26591588.v1
title: Additional file 1 of Temporal changes in characteristics and external validity of randomized controlled trials in older people from 2012 to 2019

description: Additional file 1.
DOI: 10.17632/tbj2xtvnmp.1
title: Project delay cause

description: including project delay cause in different article
DOI: 10.6084/m9.figshare.26591606.v1
title: Additional file 7 of A unique effector secreted by Pseudozyma flocculosa mediates its biocontrol activity

description: Additional file 7. Biocontrol assessment data for wild type U. maydis and FB1 transformants expressing Pf2826 inoculated on powdery mildew-infected barley (associated to Fig. 5B).
DOI: 10.6084/m9.figshare.26591606
title: Additional file 7 of A unique effector secreted by Pseudozyma flocculosa mediates its biocontrol activity

description: Additional file 7. Biocontrol assessment data for wild type U. maydis and FB1 transformants expressing Pf2826 inoculated on powdery mildew-infected barley (associated to Fig. 5B).
DOI: 10.6084/m9.figshare.26591597.v1
title: Additional file 4 of A unique effector secreted by Pseudozyma flocculosa mediates its biocontrol activity

description: Additional file 4: Tables S1. Potential interactors that are unique only to the Pf2826 were identified after removing the proteins present in negative controls.
DOI: 10.6084/m9.figshare.26591603
title: Additional file 6 of A unique effector secreted by Pseudozyma flocculosa mediates its biocontrol activity

description: Additional file 6. Biocontrol assessment data for wild type P. flocculosa and Cas9 transformants inoculated on powdery mildew-infected barley (associated to Fig. 2B).
DOI: 10.6084/m9.figshare.26591603.v1
title: Additional file 6 of A unique effector secreted by Pseudozyma flocculosa mediates its biocontrol activity

description: Additional file 6. Biocontrol assessment data for wild type P. flocculosa and Cas9 transformants inoculated on powdery mildew-infected barley (associated to Fig. 2B).
DOI: 10.15468/dl.ks4bb5
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((142.990813 -36.69015, 142.990813 -36.692396, 142.993059 -36.692396, 142.993059 -36.69015, 142.990813 -36.69015)), ((142.993059 -36.692396, 142.993059 -36.699133, 142.997551 -36.699133, 142.997551 -36.701379, 142.993059 -36.701379, 142.993059 -36.705871, 142.990813 -36.705871, 142.990813 -36.694642, 142.984076 -36.694642, 142.984076 -36.692396, 142.979584 -36.692396, 142.979584 -36.694642, 142.975093 -36.694642, 142.975093 -36.699133, 142.970601 -36.699133, 142.970601 -36.703625, 142.972847 -36.703625, 142.972847 -36.705871, 142.975093 -36.705871, 142.975093 -36.710362, 142.979584 -36.710362, 142.979584 -36.708117, 142.984076 -36.708117, 142.984076 -36.705871, 142.986322 -36.705871, 142.986322 -36.708117, 142.993059 -36.708117, 142.993059 -36.712608, 142.997551 -36.712608, 142.997551 -36.714854, 143.002042 -36.714854, 143.002042 -36.712608, 143.022254 -36.712608, 143.022254 -36.708117, 143.0245 -36.708117, 143.0245 -36.705871, 143.020009 -36.705871, 143.020009 -36.701379, 143.015517 -36.701379, 143.015517 -36.699133, 143.011025 -36.699133, 143.011025 -36.696888, 143.006534 -36.696888, 143.006534 -36.694642, 143.002042 -36.694642, 143.002042 -36.692396, 142.993059 -36.692396)))"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065978-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26565567.v1
title: Additional file 5 of Role of mitochondrial metabolic disorder and immune infiltration in diabetic cardiomyopathy: new insights from bioinformatics analysis

description: Additional file 5: Table S4. KEGG pathway enrichment analyses of DEGs from GSE4745, GSE5606 and GSE6880.
DOI: 10.6084/m9.figshare.26591597
title: Additional file 4 of A unique effector secreted by Pseudozyma flocculosa mediates its biocontrol activity

description: Additional file 4: Tables S1. Potential interactors that are unique only to the Pf2826 were identified after removing the proteins present in negative controls.
DOI: 10.6084/m9.figshare.26651862
title: Additional file 1 of The use of foundational ontologies in biomedical research

description: Additional file 1.
DOI: 10.6084/m9.figshare.26651862.v1
title: Additional file 1 of The use of foundational ontologies in biomedical research

description: Additional file 1.
DOI: 10.17632/2p8ys6tvgy.1
title: KBG syndrome-associated protein ANKRD11 regulates SETD5 expression to modulate rRNA levels and translation. Sashiyama et al.

description: The haploinsufficiency of ANKRD11 or SETD5 is implicated in KBG syndrome characterized by intellectual disability, autism spectrum disorders, and skeletal abnormalities. However, the molecular mechanisms linking these protein deficiencies to KBG syndrome are not fully understood. Here we report that ANKRD11-deficient neural cells exhibit reduced ribosomal RNA (rRNA) and translational activity. ANKRD11 is primarily localized outside the nucleolus, where rDNA transcription occurs, suggesting an indirect role in regulating rRNA expression. Instead, ANKRD11 increases SETD5 expression known to enhance rRNA production. Mechanistically, ANKRD11 interacts with the Setd5 promoter, recruiting WDR5, a component of the histone H3 lysine 4 (H3K4) methyltransferase complex involved in transcriptional activation. Correspondingly, reduced H3K4 methylation on the Setd5 promoter correlates with diminished SETD5 expression in ANKRD11-deficient cells Overexpression of ANKRD11 or SETD5 restores rRNA levels and translational activity. These findings underscore the role of the ANKRD11-SETD5 axis in alleviating KBG syndrome pathogenesis, offering insights into potential therapeutic targets.
DOI: 10.15468/dl.hqq6z2
title: Occurrence Download

description: A dataset containing 7037621 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "GadmGid is ZAF.9_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 7037621 records from 717 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065945-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kbx378
title: Occurrence Download

description: A dataset containing 5290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Peropteryx macrotis (Wagner, 1843)"
 ]
}

 The dataset includes 5290 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004629-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.