cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/inscriptifact-ouc1sto1610524
title: InscriptiFact -- an image database of inscriptions and artifacts

description: The InscriptiFact Collection is designed to allow access via the Internet to high-resolution images of ancient inscriptions and artifacts, primarily from the Near Eastern and Mediterranean Worlds. The targeted inscriptions constitute some of the world’s earliest written records, which are mostly housed in a number of international museums and libraries, as well as field projects where inscriptions still remain in situ. Included, for example, are, selected Dead Sea Scrolls; cuneiform tablets from Mesopotamia, Persia, Canaan and Egypt; early Jewish papyri from Egypt; lapidary inscriptions, primarily from Jordan, Lebanon and Cyprus; inscriptions on a variety of hard media (e.g., ostraca, copper, semi-precious stones, jar handles) mostly written in early Canaanite, Phoenician, Hebrew, Aramaic, Ammonite and Edomite; and much more. These ancient texts are foundational documents that serve as a point of reference for Judaism, Christianity, Islam and the cultures out of which they emerged. The name "InscriptiFact" is intended to convey the concept of a scholarly archive based on "facts" about "inscriptions" and "artifacts." West Semitic Research Project (WSRP) under the auspices of the University of Southern California (USC) is broadly acknowledged as a leader in the application of photographic and digital technologies to capture and analyze data of ancient texts. The West Semitic Research image archive now contains approximately 1,500,000 images. Important! Search terms with more than one word or number need to be enclosed in quotation marks.Guide to Searching InscriptiFact
DOI: 10.13130/rd_unimi/qa4bro/w8s1pv
title: 250408_OPT2_TensileTest_091.tif

description: 250729_EXPERIMENTAL_DATA/250408_OPT2_Video 250408_OPT2_TensileTest_091.tif
DOI: 10.13130/rd_unimi/qa4bro/toh5g0
title: 250408_OPT2_TensileTest_092.tif

description: 250729_EXPERIMENTAL_DATA/250408_OPT2_Video 250408_OPT2_TensileTest_092.tif
DOI: 10.15468/dl.3894wn
title: Occurrence Download

description: A dataset containing 425473 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Poaceae",
 "Country is Norway",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 425473 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026845-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13130/rd_unimi/qa4bro/umw0s1
title: 250408_OPT2_TensileTest_094.tif

description: 250729_EXPERIMENTAL_DATA/250408_OPT2_Video 250408_OPT2_TensileTest_094.tif
DOI: 10.13130/rd_unimi/qa4bro/wbsnw0
title: 250408_OPT2_TensileTest_093.tif

description: 250729_EXPERIMENTAL_DATA/250408_OPT2_Video 250408_OPT2_TensileTest_093.tif
DOI: 10.25549/inscriptifact-ouc110613427
title: Persepolis Fortification Elamite Tablet 2072, PF 2072

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 2072 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform, Aramaic ❧ [Physical Object Description:] Clay tablet with cuneiform text. Aramaic ink inscription on obverse, upper edge and reverse. Seal impression on left edge. ❧ [Physical Object Note:] Right edge and bottom edge broken off. Cracks on tablet.
DOI: 10.25549/inscriptifact-ouc110617009
title: Persepolis Fortification Aramaic Text 677, PFAT 677

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAT 677 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription on obverse, upper edge and round edge. Seal impression on obverse and reverse. ❧ [Physical Object Note:] Flat edge chipped. Minor cracks on tablet.
DOI: 10.13130/rd_unimi/qa4bro/g3leie
title: 250408_OPT2_TensileTest_095.tif

description: 250729_EXPERIMENTAL_DATA/250408_OPT2_Video 250408_OPT2_TensileTest_095.tif
DOI: 10.13130/rd_unimi/qa4bro/uoylpb
title: 250408_OPT2_TensileTest_096.tif

description: 250729_EXPERIMENTAL_DATA/250408_OPT2_Video 250408_OPT2_TensileTest_096.tif
DOI: 10.25549/inscriptifact-ouc110613418
title: Persepolis Fortification Elamite Tablet 2072, PF 2072

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 2072 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform, Aramaic ❧ [Physical Object Description:] Clay tablet with cuneiform text. Aramaic ink inscription on obverse, upper edge and reverse. Seal impression on left edge. ❧ [Physical Object Note:] Right edge and bottom edge broken off. Cracks on tablet.
DOI: 10.25549/inscriptifact-ouc110614002
title: Persepolis Fortification Elamite Tablet 0293, PF-NN 0293

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 0293 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform, Aramaic ❧ [Physical Object Description:] Clay tablet with cuneiform text. Aramaic ink inscription on upper edge and reverse. Seal impression on reverse and left edge. ❧ [Physical Object Note:] Upper edge, flat edge broken.
DOI: 10.13130/rd_unimi/qa4bro/sdfagp
title: 250408_OPT2_TensileTest_097.tif

description: 250729_EXPERIMENTAL_DATA/250408_OPT2_Video 250408_OPT2_TensileTest_097.tif
DOI: 10.13130/rd_unimi/qa4bro/firgni
title: 250408_OPT2_TensileTest_098.tif

description: 250729_EXPERIMENTAL_DATA/250408_OPT2_Video 250408_OPT2_TensileTest_098.tif
DOI: 10.25549/inscriptifact-ouc110613412
title: Persepolis Fortification Elamite Tablet 2072, PF 2072

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 2072 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform, Aramaic ❧ [Physical Object Description:] Clay tablet with cuneiform text. Aramaic ink inscription on obverse, upper edge and reverse. Seal impression on left edge. ❧ [Physical Object Note:] Right edge and bottom edge broken off. Cracks on tablet.
DOI: 10.13130/rd_unimi/qa4bro/semeyt
title: 250408_OPT2_TensileTest_099.tif

description: 250729_EXPERIMENTAL_DATA/250408_OPT2_Video 250408_OPT2_TensileTest_099.tif
DOI: 10.25549/inscriptifact-ouc110613999
title: Persepolis Fortification Elamite Tablet 0293, PF-NN 0293

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 0293 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform, Aramaic ❧ [Physical Object Description:] Clay tablet with cuneiform text. Aramaic ink inscription on upper edge and reverse. Seal impression on reverse and left edge. ❧ [Physical Object Note:] Upper edge, flat edge broken.
DOI: 10.13130/rd_unimi/qa4bro/q8ykvo
title: 250408_OPT2_TensileTest_100.tif

description: 250729_EXPERIMENTAL_DATA/250408_OPT2_Video 250408_OPT2_TensileTest_100.tif
DOI: 10.15468/dl.seq822
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Reaumuria kaschgarica Rupr.",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation)"
 ]
}

 The dataset includes 49 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032111-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e4n8tu
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Daphne altaica Pall.",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation)"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032112-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qvx9me
title: Occurrence Download

description: A dataset containing 669 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bursera submoniliformis Engl."
 ]
}

 The dataset includes 669 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032110-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d8bnyr
title: Occurrence Download

description: A dataset containing 503 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trapa natans L.",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation)"
 ]
}

 The dataset includes 503 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032113-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dnzrh6
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bursera stenophylla Sprague & L.Riley"
 ]
}

 The dataset includes 72 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032109-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t2yjnp
title: Occurrence Download

description: A dataset containing 100135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bursera simaruba (L.) Sarg."
 ]
}

 The dataset includes 100135 records from 354 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032098-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29067929
title: Appendix 1. Statistic Descriptive. Table 1.9 Crosstabulation between Business Sectors and Permit

description: <b>Disclaimer:</b>The raw data of this crosstabulation originates from the 2023 Medan City MSME survey undertaken by the Medan City administration. All MSMEs in this study possess a business registration or operating permit in Medan City. The researcher has received authorization from the Medan City Government to analyze and publish this data by permit number 000.9/1826 in 2023.
DOI: 10.6084/m9.figshare.29067929.v2
title: Appendix 1. Statistic Descriptive. Table 1.9 Crosstabulation between Business Sectors and Permit

description: <b>Disclaimer:</b>The raw data of this crosstabulation originates from the 2023 Medan City MSME survey undertaken by the Medan City administration. All MSMEs in this study possess a business registration or operating permit in Medan City. The researcher has received authorization from the Medan City Government to analyze and publish this data by permit number 000.9/1826 in 2023.
DOI: 10.6084/m9.figshare.29067929.v1
title: Appendix 1. Statistic Descriptive. Table 1.9 Crosstabulation between Business Sectors and Permit

description: <b>Disclaimer:</b>The raw data of this crosstabulation originates from the 2023 Medan City MSME survey undertaken by the Medan City administration. All MSMEs in this study possess a business registration or operating permit in Medan City. The researcher has received authorization from the Medan City Government to analyze and publish this data by permit number 000.9/1826 in 2023.
DOI: 10.15468/dl.z9twb3
title: Occurrence Download

description: A dataset containing 5030692 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Naturalis Biodiversity Center (NL) - Botany"
 ]
}

 The dataset includes 5030692 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032096-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rv6an5
title: Occurrence Download

description: A dataset containing 243554 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Lao People’s Democratic Republic",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 243554 records from 388 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032086-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a88fqk
title: Occurrence Download

description: A dataset containing 140353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xestia praevia Lafontaine, 1998, Xestia perquiritata Morrison, 1874, Syndemis afflictana (Walker, 1863), Argyresthia abies Freeman, 1972, Zeiraphera unfortunana Powell, 1983, Zeiraphera canadensis Mutuura & Freeman, 1967, Choristoneura occidentalis (Walsingham, 1891), Eupithecia lariciata (Freyer, 1841), Zeiraphera fortunana (Kearfott, 1907), Archips packardiana (Fernald, 1886), Eupithecia albicapitata Packard, 1876, Acronicta sperata Grote, 1873, Cinara curvipes (Patch, 1912), Amorbia humerosana Clemens, 1860, Choristoneura pinus Freeman, 1953, Sphinx poecila Stephens, 1828, Orthosia hibisci Guenée, 1852, Epipyga cribrata (Lethierry, 1890), Marmara fasciella (Chambers, 1875), Prochoerodes lineola (Goeze, 1781), Argyrotaenia pinatubana (Kearfott, 1905), Philaenus spumarius (Linnaeus, 1758), Macaria pustularia (Guenée, 1857), Adelges piceae (Ratzeburg, 1844), Melampsorella elatina (Alb. & Schwein.) Arthur, Milesina kriegeriana (Magnus) Magnus, Sydowia polyspora (Bref. & Tavel) E.Müll., Milesina blechni (Syd. & P.Syd.) Syd. & P.Syd., Dioryctria resiniphila Segerer & Pröse, 1997, Zeiraphera rufimitrana (Herrich-Schäffer, 1851), Epinotia fraternana (Haworth, 1811), Megastigmus strobilobius Ratzeburg, 1848, Megastigmus rafni Hoffmeyer, 1929, Coccophagus lycimnia (Walker, 1839), Megastigmus suspectus Borries, 1895, Heterobasidion occidentale Otrosina & Garbel., Choristoneura viridis Freeman, 1967, Chrysobothris pseudotsugae Van Dyke, 1916, Chrysophana placida (LeConte, 1854), Trachykele nimbosa Fall, 1906, Chalcophora angulicollis (LeConte, 1857), Milesina scolopendrii (Fuckel) Jaap, Milesina dieteliana (Syd. & P.Syd.) Magnus, Archips issikii Kodama, 1960, Orgyia pseudotsugata McDunnough, 1921, Chionodes abella (Busck, 1903), Eupithecia spermaphaga (Dyar, 1917), Orgyia oslari Barnes, 1900, Syngrapha celsa Edwards, 1881, Argyrotaenia dorsalana (Dyar, 1903))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 140353 records from 801 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032097-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15420812
title: Data and code for Junction-Specific Cryptic Exon RT-qPCR

description: This dataset, including raw experimental data, uncropped Western blot images, and accompanying analysis code, supports the findings of the manuscript "Junction-Specific Cryptic Exon RT-qPCR Quantifies Sub-percent Nuclear TDP-43 Loss in Cells and ALS Cortex" by Koide et al. 

The study focuses on the development and validation of an ultrasensitive RT-qPCR assay for quantifying cryptic exon (CE) splicing, a molecular hallmark of TDP-43 dysfunction in amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). The novel assay employs a junction-specific primer design targeting STMN2 CE, which significantly enhances sensitivity and dynamic range compared to conventional methods by eliminating pre-mRNA co-amplification.

This repository contains:





Raw_Ct_value.xlsx: An Excel file containing the raw cycle threshold (Ct) values from all RT-qPCR experiments performed in cultured cells (SH-SY5Y, HEK293T) and post-mortem human ALS motor cortex and control tissues. This sheet serves as the primary source for qPCR quantification.




Raw data CSV files (within a Rawdata): CSV files derived from Raw_Ct_value.xlsx or other primary sources, formatted for direct input into the R analysis script. These files contain data used to quantify the expression of STMN2 CE, other TDP-43 responsive CEs, alternative splicing events, and reference genes, and form the basis for generating figures and tables.




Uncropped Western Blot Images: Original, uncropped images for all Western blots presented in the manuscript (e.g., Figure 3B). These images provide the full context for the presented cropped blots, ensuring transparency in data presentation. 




R Markdown file (.Rmd): The R Markdown script used for all statistical analyses, data processing, and figure generation presented in the manuscript. This code allows for the full reproduction of the analyses and figures from the provided CSV data files.




PDF report generated from the R Markdown file (.pdf): This document ("Raw Data and Analysis Code for: Junction-Specific Cryptic Exon RT-qPCR Quantifies Sub-percent Nuclear TDP-43 Loss in Cells and ALS Cortex.pdf") details the R code, package versions used, and sequentially shows the code execution and resulting figures and statistical outputs, corresponding to each figure in the main manuscript.



The aim of sharing this comprehensive dataset and code is to ensure full transparency and reproducibility of our research findings, and to enable further investigation and utilization by the scientific community.

Keywords: TDP-43, Cryptic Exon, STMN2, RT-qPCR, Western Blot, Amyotrophic Lateral Sclerosis, ALS, Frontotemporal Dementia, FTD, Biomarker, Neurodegeneration, Raw Data, R code, Reproducibility.
DOI: 10.15468/dl.ywhtuo
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087024-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2m2juw
title: Occurrence Download

description: A dataset containing 478 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Polistes buyssoni Brethes, 1909)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 478 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072230-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5kn8xg
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euamiana endopolia Dyar, 1912"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048138-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6a53hw
title: Occurrence Download

description: A dataset containing 177914 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Ireland, Svalbard and Jan Mayen, Norway, Sweden, Finland, Estonia, Latvia, Denmark, Portugal, Spain, France, Germany, Netherlands, Switzerland, Austria, Italy, Greece, Türkiye, Russian Federation, Belarus, Ukraine, Poland, Czechia, Slovakia, Hungary, Romania, Bulgaria, Albania, Serbia, Slovenia, Bosnia and Herzegovina)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Galium uliginosum L."
 ]
}

 The dataset includes 177914 records from 876 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072205-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.35nnmd
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010824-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.llgj6i
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068835-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ewkpdd
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paramiana smaragdina Neumoegen, 1884"
 ]
}

 The dataset includes 70 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048171-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.