cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4037733.v1
title: Appendix 2: (A).High resolution (1Hz) GPS track and associated movement data of Himalayan Vulture. (B). Wing area and weight data of Himalayan Vulture from Behavioural adaptations to flight into thin air

description: (A). Data from Sherub et al., 2016. The start point of each identified thermalling circle is provided with annotated air density and ground elevation, and ground speed during the circle (provided by the GPS), and wind and air speed (estimated using the Sherub et al approach). Circle radius and change of elevation with the circle are included as well. Mean vertical soaring speed was calculated from the change of elevation. Circles are considered continuous thermalling movement for 30 seconds. X component refers to horizontal latitudinal movement and Y to horizontal longitudinal. (B). Legend: Data from Sherub et al., 2016. Wing area and wing loading measurements for individual Himalayan Griffon Vultures. Individuals whose name is "Griffon" were measured, but were not fitted with a GPS tag and did not participate in movement study. Wing area was measured following Pennycuick's method: the wing area was traced on a gridded paper chart. A photograph of the wing-trace was taken, and the number of occupied pixel was determined using Adobe Photoshop, and converted from pixels to m^2 using the dimensions of the gridded chart.
DOI: 10.7910/dvn/v1rjpf/hlysis
title: blc20170525_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/plprnv
title: blc20170606_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4037715
title: Putative core OTUs in Indian population
DOI: 10.7910/dvn/v1rjpf/qmyvaw
title: blc20171215_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/la8ezm
title: blc20170415_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/gnhg3b
title: blc20171010_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4037715.v1
title: Core OTUs in Indian population

description: This file contains the sequences of 37 OTUs which were observed in all the samples and forms the putative core microbiome in the Indian population.
DOI: 10.7910/dvn/v1rjpf/l5nq2j
title: blc20170129_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4037706
title: OTUs distribution among the studied samples

description: This file contains the distribution of observed OTUs across all the studied samples. A total of 785 OTUs were observed, however, upon removing the potential contaminants, only 716 OTUs were retained which are listed in this table
DOI: 10.7910/dvn/v1rjpf/zzap1y
title: blc20171112_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4037706.v1
title: OTUs distribution among the studied samples

description: This file contains the distribution of observed OTUs across all the studied samples. A total of 785 OTUs were observed, however, upon removing the potential contaminants, only 716 OTUs were retained which are listed in this table
DOI: 10.6084/m9.figshare.4037703
title: Distribution of bacterial genera among the samples

description: This file contains the bacterial genera counts observed in each of the 92 samples. A total of 165 bacterial genera were observed. However, after removing the potential contaminants only 136 bacteral genera were retained which are listed on this table.
DOI: 10.7910/dvn/v1rjpf/otkgyq
title: blc20170712_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/7j3pzk
title: blc20170615_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4037715.v4
title: Putative core OTUs in Indian population

description: This file contains the sequences of 37 OTUs which were observed in all the samples and forms the putative core microbiome in the Indian population.
DOI: 10.6084/m9.figshare.4037715.v3
title: Core OTUs in Indian population

description: This file contains the sequences of 37 OTUs which were observed in all the samples and forms the putative core microbiome in the Indian population.
DOI: 10.7910/dvn/v1rjpf/k6nvjn
title: blc20170608_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4037703.v1
title: Distribution of bacterial genera among the samples

description: This file contains the bacterial genera counts observed in each of the 92 samples. A total of 165 bacterial genera were observed. However, after removing the potential contaminants only 136 bacteral genera were retained which are listed on this table.
DOI: 10.6084/m9.figshare.4037697
title: OTUs sequences

description: This file contains the sequences of the 716 OTUs obtained after all the filtration and clustering steps including contaminants removal.
DOI: 10.6084/m9.figshare.4037703.v3
title: Distribution of bacterial genera among the samples

description: This file contains the bacterial genera counts observed in each of the 92 samples. A total of 165 bacterial genera were observed. However, after removing the potential contaminants only 136 bacteral genera were retained which are listed on this table.
DOI: 10.7910/dvn/v1rjpf/oz1u7v
title: blc20170317_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4037697.v1
title: OTUs sequences

description: This file contains the sequences of the 716 OTUs obtained after all the filtration and clustering steps including contaminants removal.
DOI: 10.7910/dvn/v1rjpf/raq5yb
title: blc20171104_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4037691
title: Genetic diversity, mating types and phylogenetic analysis of Indian races of <i>Fusarium oxysporum</i> f. sp. <i>ciceris</i> from chickpea

description: The present study describes the comparative analysis of five genetic markers viz., random amplified polymorphic DNA (RAPD), enterobacterial repetitive intergenic consensus (ERIC), BOX-elements, mating type (MAT) locus and microsatellites for genetic analysis of virulent isolates of <i>Fusarium oxysporum</i> f. sp. <i>ciceri</i> (FOC) representing seven races from chickpea. Phylogenetic analysis of translation elongation factor 1-α and internal transcribed spacer region separated all the FOC isolates into two major clades. Majority of the isolates (FOC 63, FOC 33, FOC 40, FOC 100, FOC 6, FOC 22, FOC 31, FOC 79 and NDFOC 98) representing race 1, 2, 5 and 6 grouped in clade I, while isolates (FOC 90, FOC 108 and FOC 88) belonging to race 3, 4 and 7 were clustered in clade II. Isolates (FOC 33, FOC 40, FOC 17 and FOC 100) representing race 2 had MAT-2 loci, while race 1 isolates (FOC 63, FOC 72 and FOC 76) contained MAT-1 loci only. The principal component analysis (PCA) of RAPD, ERIC, BOX and microsatellite marker data explained 39.94, 39.98, 42.04 and 62.59% of the total variation among test isolates, respectively. Furthermore, there was no correlation existed between genetic diversity, virulence, race compositions or geographic origin of the isolates. Overall, these findings will assist in better understanding of the genetic variability and ideally, will improve disease management practices.
DOI: 10.6084/m9.figshare.4037694
title: Details of the samples and their corresponding locations

description: The file contains the details of the 92 samples studied here, including their location, region and the physical factors of each of the sampling locations
DOI: 10.6084/m9.figshare.4037691.v1
title: Genetic diversity, mating types and phylogenetic analysis of Indian races of <i>Fusarium oxysporum</i> f. sp. <i>ciceris</i> from chickpea

description: The present study describes the comparative analysis of five genetic markers viz., random amplified polymorphic DNA (RAPD), enterobacterial repetitive intergenic consensus (ERIC), BOX-elements, mating type (MAT) locus and microsatellites for genetic analysis of virulent isolates of <i>Fusarium oxysporum</i> f. sp. <i>ciceri</i> (FOC) representing seven races from chickpea. Phylogenetic analysis of translation elongation factor 1-α and internal transcribed spacer region separated all the FOC isolates into two major clades. Majority of the isolates (FOC 63, FOC 33, FOC 40, FOC 100, FOC 6, FOC 22, FOC 31, FOC 79 and NDFOC 98) representing race 1, 2, 5 and 6 grouped in clade I, while isolates (FOC 90, FOC 108 and FOC 88) belonging to race 3, 4 and 7 were clustered in clade II. Isolates (FOC 33, FOC 40, FOC 17 and FOC 100) representing race 2 had MAT-2 loci, while race 1 isolates (FOC 63, FOC 72 and FOC 76) contained MAT-1 loci only. The principal component analysis (PCA) of RAPD, ERIC, BOX and microsatellite marker data explained 39.94, 39.98, 42.04 and 62.59% of the total variation among test isolates, respectively. Furthermore, there was no correlation existed between genetic diversity, virulence, race compositions or geographic origin of the isolates. Overall, these findings will assist in better understanding of the genetic variability and ideally, will improve disease management practices.
DOI: 10.7910/dvn/v1rjpf/cgc4sr
title: blc20170611_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4037688
title: 92samples_original_sequences
DOI: 10.7910/dvn/v1rjpf/29jvki
title: blc20171126_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/iezn3w
title: blc20170727_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4037688.v1
title: 92samples_original_sequences.rar

description: This file contains the original fasta sequences dataset from each of the 92 samples studied here. The filename indicates its population affiliation.
DOI: 10.7910/dvn/v1rjpf/itnk1g
title: blc20171214_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4037664
title: Growth data of snow crab (Chionoecetes opilio)

description: The carapace width at age and instar data of snow crab (<i>Chionoecetes opilio</i>) used for the article: A novel growth function incorporating the effects of reproductive investment.<br>The data is obtained from Yamamoto <i>et al. </i>(2015 <i>J. Crustacean Biol.</i>) for the 1st to 6th instars and Ueda <i>et al.</i>(2015 <i>Assessment of fisheries stocks in the waters around Japan in 2015 FY, Part 1</i>) for the 7th to 13th instars. <br>M and F represent male and female, respectively.The number represents the number of terminal molting, after which body growth ceases. <br>
DOI: 10.6084/m9.figshare.4037688.v3
title: 92samples_original_sequences

description: This file contains the original fasta sequences dataset from each of the 92 samples studied here. The filename indicates its population affiliation.
DOI: 10.6084/m9.figshare.4037664.v1
title: Growth data of snow crab (Chionoecetes opilio)

description: The carapace width at age and instar data of snow crab (<i>Chionoecetes opilio</i>) used for the article: A novel growth function incorporating the effects of reproductive investment.<br>The data is obtained from Yamamoto <i>et al. </i>(2015 <i>J. Crustacean Biol.</i>) for the 1st to 6th instars and Ueda <i>et al.</i>(2015 <i>Assessment of fisheries stocks in the waters around Japan in 2015 FY, Part 1</i>) for the 7th to 13th instars. <br>M and F represent male and female, respectively.The number represents the number of terminal molting, after which body growth ceases. <br>
DOI: 10.6084/m9.figshare.4037688.v2
title: 92samples_original_sequences.rar

description: This file contains the original fasta sequences dataset from each of the 92 samples studied here. The filename indicates its population affiliation.
DOI: 10.7910/dvn/v1rjpf/hrhmhg
title: blc20171213_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4037655
title: Evaluating the timing of former glacier expansions in the Tian Shan - Supplementary dataset

description: This document package contains additional data and data analysis supporting the manuscript "Evaluating the timing of former glacier expansion in the Tian Shan: a key step towards robust spatial correlations" by Blomdin et al., Paper IV in the PhD thesis by Robin Blomdin, Stockholm University. The manuscript is currently accepted for publication in Quaternary Science Reviews.
DOI: 10.6084/m9.figshare.4037658
title: Quantification of <i>Saprolegnia parasitica</i> in river water using real-time quantitative PCR: from massive fish mortality to tap drinking water

description: Since 2010, the Loue River (Franche-Comté, East of France) has been suffering from massive fish kills infested by <i>Saprolegnia parasitica</i>. The river supplies inhabitants of the city of Besançon in drinking water, raising the question of a potential risk through both water consumption and use. We developed a real-time quantitative PCR (qPCR) to quantify <i>S. parasitica</i> in the Loue River as well as in the drinking water. A weak spatial trend is suggested with greater quantities of <i>S. parasitica</i> observed at the sampling station close to the main pumping station. No <i>S. parasitica</i> DNA was detected in the tap water connected to pumping stations. The use of qPCR, which combines specificity, practicality, speed and reliability, appears to be an effective tool to monitor the spatial and temporal dynamics of this oomycete and identify the risk period for wild salmonid populations in the field, for fishery management or in aquaculture.
DOI: 10.6084/m9.figshare.4037658.v1
title: Quantification of <i>Saprolegnia parasitica</i> in river water using real-time quantitative PCR: from massive fish mortality to tap drinking water

description: Since 2010, the Loue River (Franche-Comté, East of France) has been suffering from massive fish kills infested by <i>Saprolegnia parasitica</i>. The river supplies inhabitants of the city of Besançon in drinking water, raising the question of a potential risk through both water consumption and use. We developed a real-time quantitative PCR (qPCR) to quantify <i>S. parasitica</i> in the Loue River as well as in the drinking water. A weak spatial trend is suggested with greater quantities of <i>S. parasitica</i> observed at the sampling station close to the main pumping station. No <i>S. parasitica</i> DNA was detected in the tap water connected to pumping stations. The use of qPCR, which combines specificity, practicality, speed and reliability, appears to be an effective tool to monitor the spatial and temporal dynamics of this oomycete and identify the risk period for wild salmonid populations in the field, for fishery management or in aquaculture.
DOI: 10.7910/dvn/v1rjpf/xt3oxr
title: blc20170930_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4037655.v1
title: Evaluating the timing of former glacier expansions in the Tian Shan - Supplementary dataset

description: This document package contains additional data and data analysis supporting the manuscript "Evaluating the timing of former glacier expansion in the Tian Shan: a key step towards robust spatial correlations" by Blomdin et al., Paper IV in the PhD thesis by Robin Blomdin, Stockholm University. The manuscript is currently accepted for publication in Quaternary Science Reviews.
DOI: 10.6084/m9.figshare.4037652
title: Two new fluorescent Zn<sup>2+</sup> sensors exhibiting different sensing mode with subtle structural changes

description: Two novel receptors <b>HL-1</b> and <b>HL-2</b> without and with hydroxyl groups were designed and synthesised. Both receptors showed highly selective coordination towards Zn<sup>2+</sup> and exhibited diverse sensing behaviour due to the structural variations. <b>HL-1</b> showed monotonous ‘turn-on’ response towards Zn<sup>2+</sup> while <b>HL-2</b> displayed highly Zn<sup>2+</sup> sensitive ‘turn on’ and ‘ratiometric’ properties. Detailed Job plot experiment, single crystal data, <sup>1</sup>H NMR, ESI-MS, UV–vis and density functional theory calculation studies were conducted to understand the binding modes of <b>HL-1</b> and <b>HL-2</b> with Zn<sup>2+</sup>. These results revealed the binding stoichiometric ratio between receptors and Zn<sup>2+</sup> were 1:1 with low detection limits and high binding constants. Two novel receptors <b>HL-1</b> and <b>HL-2</b> without and with hydroxyl groups were designed and synthesised via TCR reaction. Both of them showed selective coordination to Zn<sup>2+</sup> ions but exhibited incongruent sensing mode due to structural variations. <b>HL-1</b> showed monotonous ‘turn-on’ whereas <b>HL-2</b> displayed highly sensitive ‘turn on’ and ‘ratiometric’ properties towards Zn<sup>2+</sup>.
DOI: 10.7910/dvn/v1rjpf/bcb8gj
title: blc20171006_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4037652.v1
title: Two new fluorescent Zn<sup>2+</sup> sensors exhibiting different sensing mode with subtle structural changes

description: Two novel receptors <b>HL-1</b> and <b>HL-2</b> without and with hydroxyl groups were designed and synthesised. Both receptors showed highly selective coordination towards Zn<sup>2+</sup> and exhibited diverse sensing behaviour due to the structural variations. <b>HL-1</b> showed monotonous ‘turn-on’ response towards Zn<sup>2+</sup> while <b>HL-2</b> displayed highly Zn<sup>2+</sup> sensitive ‘turn on’ and ‘ratiometric’ properties. Detailed Job plot experiment, single crystal data, <sup>1</sup>H NMR, ESI-MS, UV–vis and density functional theory calculation studies were conducted to understand the binding modes of <b>HL-1</b> and <b>HL-2</b> with Zn<sup>2+</sup>. These results revealed the binding stoichiometric ratio between receptors and Zn<sup>2+</sup> were 1:1 with low detection limits and high binding constants. Two novel receptors <b>HL-1</b> and <b>HL-2</b> without and with hydroxyl groups were designed and synthesised via TCR reaction. Both of them showed selective coordination to Zn<sup>2+</sup> ions but exhibited incongruent sensing mode due to structural variations. <b>HL-1</b> showed monotonous ‘turn-on’ whereas <b>HL-2</b> displayed highly sensitive ‘turn on’ and ‘ratiometric’ properties towards Zn<sup>2+</sup>.
DOI: 10.6084/m9.figshare.4037619
title: Frequency distribution of willowy flounder (Tanakius kitaharae) and Alaska pollock (Gadus chalcogrammus)

description: Frequency distribution of length at age data of willowy flounder (<i>Tanakius kitaharae)</i> and length at age and gonad weight data of Alaska pollock (<i>Gadus chalcogrammus</i>) used in the article: A novel growth function incorporating the effects of reproductive investment.<br><br>The length at age data for Alaska pollock and willowy flounder and the gonad weight at length data for Alaska pollock are converted into frequency distribution to avoid complexity of raw data and to enhance usability.<br>
DOI: 10.6084/m9.figshare.4037619.v1
title: Frequency distribution of willowy flounder (Tanakius kitaharae) and Alaska pollock (Gadus chalcogrammus)

description: Frequency distribution of length at age data of willowy flounder (<i>Tanakius kitaharae)</i> and length at age and gonad weight data of Alaska pollock (<i>Gadus chalcogrammus</i>) used in the article: A novel growth function incorporating the effects of reproductive investment.<br><br>The length at age data for Alaska pollock and willowy flounder and the gonad weight at length data for Alaska pollock are converted into frequency distribution to avoid complexity of raw data and to enhance usability.<br>
DOI: 10.7910/dvn/v1rjpf/ohqnr0
title: blc20170227_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.4037577
title: Supplementary Material for: White Matter Hyperintensities Improve Ischemic Stroke Recurrence Prediction

description: <i>Background:</i> Nearly one in 5 patients with ischemic stroke will invariably experience a second stroke within 5 years. Stroke risk stratification schemes based solely on clinical variables perform only modestly in non-atrial fibrillation (AF) patients and improvement of these schemes will enhance their clinical utility. Cerebral white matter hyperintensities are associated with an increased risk of incident ischemic stroke in the general population, whereas their association with the risk of ischemic stroke recurrence is more ambiguous. In a non-AF stroke cohort, we investigated the association between cerebral white matter hyperintensities and the risk of recurrent ischemic stroke, and we evaluated the predictive performance of the CHA2DS2VASc score and the Essen Stroke Risk Score (clinical scores) when augmented with information on white matter hyperintensities. <i>Methods:</i> In a registry-based, observational cohort study, we included 832 patients (mean age 59.6 (SD 13.9); 42.0% females) with incident ischemic stroke and no AF. We assessed the severity of white matter hyperintensities using MRI. Hazard ratios stratified by the white matter hyperintensities score and adjusted for the components of the CHA2DS2VASc score were calculated based on the Cox proportional hazards analysis. Recalibrated clinical scores were calculated by adding one point to the score for the presence of moderate to severe white matter hyperintensities. The discriminatory performance of the scores was assessed with the C-statistic. <i>Results:</i> White matter hyperintensities were significantly associated with the risk of recurrent ischemic stroke after adjusting for clinical risk factors. The hazard ratios ranged from 1.65 (95% CI 0.70-3.86) for mild changes to 5.28 (95% CI 1.98-14.07) for the most severe changes. C-statistics for the prediction of recurrent ischemic stroke were 0.59 (95% CI 0.51-0.65) for the CHA2DS2VASc score and 0.60 (95% CI 0.53-0.68) for the Essen Stroke Risk Score. The recalibrated clinical scores showed improved C-statistics: the recalibrated CHA2DS2VASc score 0.62 (95% CI 0.54-0.70; p = 0.024) and the recalibrated Essen Stroke Risk Score 0.63 (95% CI 0.56-0.71; p = 0.031). C-statistics of the white matter hyperintensities score were 0.62 (95% CI 0.52-0.68) to 0.65 (95% CI 0.58-0.73).<i>Conclusions:</i> An increasing burden of white matter hyperintensities was independently associated with recurrent ischemic stroke in a cohort of non-AF ischemic stroke patients. Recalibration of the CHA2DS2VASc score and the Essen Stroke Risk Score with one point for the presence of moderate to severe white matter hyperintensities led to improved discriminatory performance in ischemic stroke recurrence prediction. Risk scores based on white matter hyperintensities alone were at least as accurate as the established clinical risk scores in the prediction of ischemic stroke recurrence.
DOI: 10.7910/dvn/v1rjpf/abym2c
title: blc20170323_03.txt.gz

description: :unav