cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8001863
title: Dataset for: Simulation and data-generation for random-effects network meta-analysis of binary outcome

description: The performance of statistical methods is frequently evaluated by means of simulation studies. In case of network meta-analysis of binary data, however, available data- generating models are restricted to either inclusion of two-armed trials or the fixed-effect model. Based on data-generation in the pairwise case, we propose a framework for the simulation of random-effect network meta-analyses including multi-arm trials with binary outcome. The only of the common data-generating models which is directly applicable to a random-effects network setting uses strongly restrictive assumptions. To overcome these limitations, we modify this approach and derive a related simulation procedure using odds ratios as effect measure. The performance of this procedure is evaluated with synthetic data and in an empirical example.
DOI: 10.6084/m9.figshare.8001857.v1
title: Mondial_With_RDFS

description: Files N-triples format about Mondial dataset (data + RDFS) . The RDF Schema was built via SPARQL queries.
DOI: 10.6084/m9.figshare.8001827
title: HyAsP NCBI RefSeq database

description: NCBI plasmids database for the HyAsP plasmid detetcion and binning tool.
DOI: 10.6084/m9.figshare.8001827.v1
title: HyAsP NCBI RefSeq database

description: NCBI plasmids database for the HyAsP plasmid detetcion and binning tool.
DOI: 10.6084/m9.figshare.8001791
title: CCDB_3782.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001797
title: CCDB_3784.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001776
title: Supplemental Tables 1-4.docx

description: Supplemental Tables 1-4 for Diabetes-related fracture risk is different in African Americans when compared to Hispanics and Caucasians.
DOI: 10.6084/m9.figshare.8001794
title: CCDB_3783.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001791.v1
title: CCDB_3782.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001797.v1
title: CCDB_3784.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001776.v1
title: Supplemental Tables 1-4.docx

description: Supplemental Tables 1-4 for Diabetes-related fracture risk is different in African Americans when compared to Hispanics and Caucasians.
DOI: 10.6084/m9.figshare.8001794.v1
title: CCDB_3783.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001719
title: dsSNP

description: Genotyping of SNP uning Massarray iPlex
DOI: 10.6084/m9.figshare.8001701
title: Dataset for: Loss of cytoplasmic incompatibility and minimal fecundity effects explain relatively low Wolbachia frequencies in Drosophila mauritiana

description: Maternally transmitted Wolbachia bacteria infect about half of all insect species. Many Wolbachia cause cytoplasmic incompatibility (CI), reduced egg hatch when uninfected females mate with infected males. Although CI produces a frequency-dependent fitness advantage that leads to high equilibrium Wolbachia frequencies, it does not aid Wolbachia spread from low frequencies. Indeed, the fitness advantages that produce initial Wolbachia spread and maintain non-CI Wolbachia remain elusive. wMau Wolbachia infecting Drosophila mauritiana do not cause CI, despite being very similar to CI-causing wNo from D. simulans (0.068% sequence divergence over 682,494 bp), suggesting recent CI loss. Using draft wMau genomes, we identify a deletion in a CI-associated gene, consistent with theory predicting that selection within host lineages does not act to increase or maintain CI. In the laboratory, wMau shows near-perfect maternal transmission; but we find no significant effect on host fecundity, in contrast to published data. Intermediate wMau frequencies on the island Mauritius are consistent with a balance between unidentified small, positive fitness effects and imperfect maternal transmission. Our phylogenomic analyses suggest that group-B Wolbachia, including wMau and wPip, diverged from group-A Wolbachia, such as wMel and wRi, 6–46 million years ago, more recently than previously estimated.
DOI: 10.6084/m9.figshare.8001656
title: CCDB_3781.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001701.v1
title: Dataset for: Loss of cytoplasmic incompatibility and minimal fecundity effects explain relatively low Wolbachia frequencies in Drosophila mauritiana

description: Maternally transmitted Wolbachia bacteria infect about half of all insect species. Many Wolbachia cause cytoplasmic incompatibility (CI), reduced egg hatch when uninfected females mate with infected males. Although CI produces a frequency-dependent fitness advantage that leads to high equilibrium Wolbachia frequencies, it does not aid Wolbachia spread from low frequencies. Indeed, the fitness advantages that produce initial Wolbachia spread and maintain non-CI Wolbachia remain elusive. wMau Wolbachia infecting Drosophila mauritiana do not cause CI, despite being very similar to CI-causing wNo from D. simulans (0.068% sequence divergence over 682,494 bp), suggesting recent CI loss. Using draft wMau genomes, we identify a deletion in a CI-associated gene, consistent with theory predicting that selection within host lineages does not act to increase or maintain CI. In the laboratory, wMau shows near-perfect maternal transmission; but we find no significant effect on host fecundity, in contrast to published data. Intermediate wMau frequencies on the island Mauritius are consistent with a balance between unidentified small, positive fitness effects and imperfect maternal transmission. Our phylogenomic analyses suggest that group-B Wolbachia, including wMau and wPip, diverged from group-A Wolbachia, such as wMel and wRi, 6–46 million years ago, more recently than previously estimated.
DOI: 10.6084/m9.figshare.8001650
title: CCDB_3780.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001656.v1
title: CCDB_3781.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001635
title: CCDB_3777.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001644
title: CCDB_3778.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001647
title: CCDB_3779.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001644.v1
title: CCDB_3778.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001650.v1
title: CCDB_3780.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001635.v1
title: CCDB_3777.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001647.v1
title: CCDB_3779.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001584
title: CCDB_3776.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001563
title: CCDB_3772.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for EphA4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.8001575
title: CCDB_3775.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001584.v1
title: CCDB_3776.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001563.v1
title: CCDB_3772.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for EphA4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.8001575.v1
title: CCDB_3775.jpg

description: Projection through merged optical section series of the astrocyte filled with AlexaFluor 568 (green) in the molecular layer of the dentate gyrus, stained with AlexaFluor 488 to reveal N-CAM (red), showing the relationship between astrocyte processes and laminar boundaries revealed by N-CAM staining. Contrast was enhanced for better viewing.
DOI: 10.6084/m9.figshare.8001449
title: File S2 - Microarray Expression Values.7z

description: Table of normalized and imputed microarray expression values for aggression, foraging and age related differences in gene expression.<br>
DOI: 10.6084/m9.figshare.8001452
title: File S4 - Microarray ANCOVA Data.7z

description: RUV adjusted expression values and analyses.<br>
DOI: 10.6084/m9.figshare.8001446
title: File S3 - Microarray ANCOVA Accessory.xlsx

description: Accessory data for microarray gene expression values<br>
DOI: 10.6084/m9.figshare.8001446.v1
title: File S3 - Microarray ANCOVA Accessory.xlsx

description: Accessory data for microarray gene expression values<br>
DOI: 10.6084/m9.figshare.8001440
title: File S6 - qPCR Data.xlsx

description: qPCR data for changes in Broad and Ftz-F1 TF-target gene relationships in response to behavior, neuroendocrine state and RNAi.<br>
DOI: 10.6084/m9.figshare.8001443
title: File S5 - Behavioral Data.xlsx

description: Aggression, foraging and broodcare behavioral data for Broad and Ftz-F1 RNAi treatments.<br>
DOI: 10.6084/m9.figshare.8001362
title: Full oral and gene database (csv format)

description: This is our complete database in csv format (with gene names, ID's, annotations, lengths, cluster sizes, and taxonomic classifications) that can be queried on our website. The difference is that it does not have the sequences – those can be downloaded in other files on figshare. This file, as well as those, can be parsed and linked by the gene identifier.<br>We recommend downloading this database and parsing it yourself if you attempt to run a query that is too large for our servers to handle.
DOI: 10.6084/m9.figshare.8001440.v1
title: File S6 - qPCR Data.xlsx

description: qPCR data for changes in Broad and Ftz-F1 TF-target gene relationships in response to behavior, neuroendocrine state and RNAi.<br>
DOI: 10.6084/m9.figshare.8001443.v1
title: File S5 - Behavioral Data.xlsx

description: Aggression, foraging and broodcare behavioral data for Broad and Ftz-F1 RNAi treatments.<br>
DOI: 10.6084/m9.figshare.8001218
title: Detection of anti-correlation of hot and cold baryons in galaxy clusters

description: The largest clusters of galaxies in the Universe contain vast amounts of dark matter, plus baryonic matter in two principal phases, a majority hot gas component and a minority cold stellar phase comprising stars, compact objects, and low-temperature gas. Hydrodynamic simulations indicate that the highest-mass systems retain the cosmic fraction of baryons, a natural consequence of which is anti-correlation between the masses of hot gas and stars within dark matter halos of fixed total mass. We report observational detection of this anti-correlation based on 4 elements of a 9x9 element covariance matrix for nine cluster properties, measured from X-ray, optical, infrared and millimetre wavelength observations of 41 clusters from the Local Cluster Substructure Survey (LoCuSS). These clusters were selected using explicit and quantitative selection rules that were then encoded in our hierarchical bayesian model. Our detection of anti-correlation is consistent with predictions from contemporary hydrodynamic cosmological simulations that were not tuned to reproduce this signal. This result is reported in Farahi et al. (2019). Here we provide the posterior chains of our model.<br><br>See the readme file for more details.
DOI: 10.6084/m9.figshare.7999544
title: Raw data - Martin et al. (2019) AEE.xlsx

description: Raw data for Martin et al. (2019) - Varietal and seasonal differences in the effects of commercial bumblebees on fruit quality in strawberry crops
DOI: 10.6084/m9.figshare.7999544.v1
title: Raw data - Martin et al. (2019) AEE.xlsx

description: Raw data for Martin et al. (2019) - Varietal and seasonal differences in the effects of commercial bumblebees on fruit quality in strawberry crops
DOI: 10.6084/m9.figshare.7999514
title: FastQC report for Zosterops borbonicus and Z. pallidus reads

description: FastQC report for Zosterops borbonicus and Z. pallidus reads before and after cleaning using Trimmomatic (v.033).<br>
DOI: 10.6084/m9.figshare.7999454
title: Stridulation in the wild kissing bug <i>Mepraia spinolai</i>: description of the stridulatory organ and vibratory disturbance signal

description: Stridulation is a type of communication in which a mechanical signal is emitted by the friction of two rigid structures. Stridulation is present in kissing bugs (Reduviidae: Triatominae), where the friction of the proboscis against the prosternal stridulatory sulcus generates a vibroacoustic signal. In the present study, we combine microscopy techniques with laser Doppler vibrometry recordings to describe the morphology of the stridulatory sulcus and the vibratory disturbance signal emitted by the kissing bug <i>Mepraia spinolai</i>. We describe the morphology of the female sulcus, and those of the three alary morphotypes present in males (micropterous, brachypterous, and macropterous). The vibratory disturbance signal was measured in females and micropterous males. The sulcus shape and location are similar to other triatomine species. The number of ridges is higher, and the distance between them is shorter in <i>M. spinolai</i> as compared to other triatomine species. We found morphological differences between alary morphotypes but did not between sexes. Stridulation consisted of two chirps of different duration and spectral composition. Also, the spectral properties differed between sexes. Females presented higher frequency components. The association between morphology and signal structure is unclear in triatomines, and further studies are required to elucidate the biomechanics of kissing bug stridulation.
DOI: 10.6084/m9.figshare.7999454.v1
title: Stridulation in the wild kissing bug <i>Mepraia spinolai</i>: description of the stridulatory organ and vibratory disturbance signal

description: Stridulation is a type of communication in which a mechanical signal is emitted by the friction of two rigid structures. Stridulation is present in kissing bugs (Reduviidae: Triatominae), where the friction of the proboscis against the prosternal stridulatory sulcus generates a vibroacoustic signal. In the present study, we combine microscopy techniques with laser Doppler vibrometry recordings to describe the morphology of the stridulatory sulcus and the vibratory disturbance signal emitted by the kissing bug <i>Mepraia spinolai</i>. We describe the morphology of the female sulcus, and those of the three alary morphotypes present in males (micropterous, brachypterous, and macropterous). The vibratory disturbance signal was measured in females and micropterous males. The sulcus shape and location are similar to other triatomine species. The number of ridges is higher, and the distance between them is shorter in <i>M. spinolai</i> as compared to other triatomine species. We found morphological differences between alary morphotypes but did not between sexes. Stridulation consisted of two chirps of different duration and spectral composition. Also, the spectral properties differed between sexes. Females presented higher frequency components. The association between morphology and signal structure is unclear in triatomines, and further studies are required to elucidate the biomechanics of kissing bug stridulation.
DOI: 10.6084/m9.figshare.7999448
title: Nitrospira MAGs recovered from publicly available metagenomes

description: Nitrospira MAGs recovered from publicly available metagenomes
DOI: 10.6084/m9.figshare.7999502.v1
title: Simultaneous Registration and Clustering for Multi-dimensional Functional Data

description: The clustering for functional data with misaligned problems has drawn much attention in the last decade. Most methods do the clustering after those functional data being registered and there has been little research using both functional and scalar variables. In this paper, we propose a simultaneous registration and clustering (SRC) model via two-level models, allowing the use of both types of variables and also allowing simultaneous registration and clustering. For the data collected from subjects in different groups, a Gaussian process functional regression model with time warping is used as the first level model; an allocation model depending on scalar variables is used as the second level model providing further information over the groups. The former carries out registration and modeling for the multi-dimensional functional data (2D curves) at the same time. This methodology is implemented using an EM algorithm, and is examined on both simulated data and real data.
DOI: 10.6084/m9.figshare.7999424
title: Simulation results for NAPL dissolution

description: The simulation results fro pore network modelling of NAPL dissolution at variably spatially correlated pore networks.
DOI: 10.6084/m9.figshare.7999370
title: Puerto Rico Service Trip Database.xlsx

description: Data set from Survey.Three separate surveys questions designed for the students, employees, and participants of Puerto Rico Community Clinic. The student survey was 30 questions, 23 Likert scale style and 7 free response, intended to gauge the perceived benefits of participating in the service trip, and the employee survey was composed of 12 questions, 8 Likert scale style, and 4 free response. Both the employee and participant surveys were translated from English. The Community Center’s participants surveys included 8 questions, 5 Likert scale style and 3 free response. All Likert scale questions ranged from strongly disagree (1) to strongly agree (5). Surveys were voluntarily completed on the last day by employees and members, whereas student surveys were conducted during the students’ trip back and were completed prior to returning home the next day. All surveys were completed anonymously, allowing one to report their true perception without concern of repercussion. <br>
DOI: 10.6084/m9.figshare.7999382
title: we all have secrets

description: don't peek