cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vnhe3p
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-111.40694 49.26076,-115.18254 49.30813,-115.23095 47.94854,-115.15834 46.60213,-112.59287 46.21832,-111.06811 46.33542,-110.93031 48.47515,-110.90051 49.04477,-111.40694 49.26076))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Salvelinus confluentus (Suckley, 1859)"
 ]
}

 The dataset includes 37 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035607-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3644066_d2.v1
title: MOESM2 of Exploring the spatiotemporal drivers of malaria elimination in Europe

description: Additional file 2: Results of statistical tests examining the differences in climatic, land use and demographic variables between European countries and those focused on eliminating the disease at the time of writing.
DOI: 10.6084/m9.figshare.c.3644069_d1.v1
title: Additional file 2: Table S1. of The genetic variants in 3’ untranslated region of voltage-gated sodium channel alpha 1 subunit gene affect the mRNA-microRNA interactions and associate with epilepsy

description: Genetic variants and alleles in 3'UTR of SCN1A_v001 of male patients and controls (in *.ped file); Table S2. genetic variants and alleles in 3'UTR of SCN1A_v001 of female patients and controls (in *.ped file); Table S3. genetic variants in 3'UTR-SCN1A found in study subjects and their locations (in *.info file); Table S4. Fisher’s exact test on rare genetic variants for case/control association study; Table S5. 50 most expressed miRNA in four parts of CNS; Table S6. STarMir parameters of predicted miRNA-binding sites of 3’UTR of SCN1A gene in genotype groups; Table S7. the frequently lost and compensatory sites for the alteration in conserved sites of miRNAs binding of 3’UTR-SCN1A in genotype groups. Table S8. the conserved sites of miRNA binding in wild type 3’UTR-SCN1A. Table S9. the comparison of STarMir parameters between males and females. “S0”-“S14.txt” were the working input files for STarMir analysis. S0. wild type (reference) 3’UTR sequence; S1. male CTTTA haplotype 3’UTR sequence; S2. male CTCTA haplotype 3’UTR sequence; S3. male CCTTA haplotype 3’UTR sequence; S4. male TTTTA haplotype 3’UTR sequence; S5. female CTTAACA haplotype 3’UTR sequence; S6. female TTCAACA haplotype 3’UTR sequence; S7. female TTTAACA 3’UTR sequence; S8. female 6568_6571del 3’UTR sequence; S9. female 7338_7344del 3’UTR sequence; S10. female 7065_7066insG 3’UTR sequence; S11. 50 microRNAs expressed in human hippocampus; S12. 50 microRNAs expressed in human frontal cortex; S13. 50 microRNAs expressed in human cerebellum; S14. 50 microRNAs expressed in human midbrain. (ZIP 403 kb)
DOI: 10.6084/m9.figshare.c.3644066_d1.v1
title: MOESM1 of Exploring the spatiotemporal drivers of malaria elimination in Europe

description: Additional file 1: Details on reported years for malaria elimination for European countries.
DOI: 10.6084/m9.figshare.c.3643979_d13.v1
title: MOESM1 of 
                     Plasmodium falciparum parasite population structure and gene flow associated to anti-malarial drugs resistance in Cambodia

description: Additional file 1. Geographic distribution of samples and allele frequency. Blood samples from P. falciparum positive patients were collected from 16 health centres or hospitals covering the areas where parasite transmission is active. The number of valid samples (282) out of the total selected samples (533) is provided per health centre. The frequency of each allele (REF/ALT) is given for the 11 loci, which were positive for LUMINEX detection. The alleles with Chi squared test statistics components (one component for each health centre) greater than 1 are highlighted in grey. The presence of Kelch-propeller domain altered allele was assessed by PCR and sequencing. The frequencies of wild type individuals and of the two major alleles C580Y and R539T are provided per location. The other alleles present at low frequency, N458Y, Y493H, I543T, P553L and V568G are pooled together. The drug sensitivity was measured routinely for patients presenting high parasitaemia (&gt;2Â %). The number of samples tested for IC50 measurements for chloroquine (CQ), piperaquine (PIP), quinine (QN), artesunate (ART), mefloquine (MF) and dihydroartemisinin (DHA) is provided.
DOI: 10.6084/m9.figshare.c.3644015_d1.v1
title: Additional file 1: Figure S1. of Micro-anatomical quantitative optical imaging: toward automated assessment of breast tissues

description: Illustration of methodology used to select MSER intensity parameters. The intensity parameters MaxVariation, MinDiversity, and Delta were selected by varying each parameter one at a time. The area fraction (AF) was calculated for each representative image after each iteration of MSER. Each intensity parameter was plotted as a function of AF. Values for the intensity parameters were selected based on which values correctly isolated nuclei from the representative images and which values led to the largest differences between tumor and benign images. Scale bar 100Â Îźm. (ZIP 140 kb)
DOI: 10.6084/m9.figshare.c.3643979_d11.v1
title: MOESM4 of 
                     Plasmodium falciparum parasite population structure and gene flow associated to anti-malarial drugs resistance in Cambodia

description: Additional file 4. Primer sequences for LDR (Ligation Detection reaction) performed.
DOI: 10.6084/m9.figshare.c.3643979_d7.v1
title: MOESM10 of 
                     Plasmodium falciparum parasite population structure and gene flow associated to anti-malarial drugs resistance in Cambodia

description: Additional file 10 . Sample Meta-information, barcode, associated drug susceptibility, associated k13 alleles and the correspondence to the KH subpopulations [8] (based on the matching of the barcode). The blank cells in the columns 21-28 and columns 29-35 means that the samples are not tested for drug susceptibility and k13 alleles, respectively.
DOI: 10.6084/m9.figshare.c.3643979_d5.v1
title: MOESM3 of 
                     Plasmodium falciparum parasite population structure and gene flow associated to anti-malarial drugs resistance in Cambodia

description: Additional file 3. PCR and LDR conditions. NV for not valid PCR. Eight LUMINEX assays were negative. Assay#7 was rejected because one allele only was not detected (Pos/Neg). LUMINEX detection was performed after microsphere hybridization and ligation reaction. ID of microspheres that were used for several assays are in bold.
DOI: 10.6084/m9.figshare.c.3643979_d4.v1
title: MOESM6 of 
                     Plasmodium falciparum parasite population structure and gene flow associated to anti-malarial drugs resistance in Cambodia

description: Additional file 6. Major features of the Single Nucleotide Polymorphisms selected for LUMINEX assay. A set 11 SNPs (highlighted in grey) has been selected from 24 SNPs validated by Daniels et al. [11]. NRAF value from three geographic areas and the global NRAF were recovered from MalariaGEN v4.0. Genome position was evaluated according to genome version 3. Subtelomere were identified based on gene composition. Valid SNPs are highlighted in grey. Frequency of valid alleles was calculated based on the data mentioned in Additional file 3. SNP ID is the column “Position” preceded by the tag “Pf3D7_[01-14]_v3:” in MalariaGEN and by the tag “NGS_SNP.Pf3D7_[01-14]_v3.” in PlasmoDB.
DOI: 10.6084/m9.figshare.c.3643979_d3.v1
title: MOESM2 of 
                     Plasmodium falciparum parasite population structure and gene flow associated to anti-malarial drugs resistance in Cambodia

description: Additional file 2. Primers sequences for PCR reactions corresponding to 20 of the 24 SNPs selected for barcode detection and for k13 locus amplification.
DOI: 10.15468/dl.va4xup
title: Occurrence Download

description: A dataset containing 60815 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-11-20",
 "EventDate is less than or equal to 2024-12-20",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 60815 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035606-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.erqz4e
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Buccinum striatissimum G.B.Sowerby Iii, 1899",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 107 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035608-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3643733_d2.v1
title: Additional file 3: Table S3. of A method for identifying discriminative isoform-specific peptides for clinical proteomics application

description: Pathway analysis for Study II (XLS 34 kb)
DOI: 10.6084/m9.figshare.c.3643733_d1.v1
title: Additional file 4: Table S4. of A method for identifying discriminative isoform-specific peptides for clinical proteomics application

description: Pathway analysis for Study III (XLS 34 kb)
DOI: 10.6084/m9.figshare.c.3643724_d2.v1
title: Additional file 3: of Dietary specialization drives multiple independent losses and gains in the bitter taste gene repertoire of Laurasiatherian Mammals

description: Excel file Supplementary_Table_S2. (XLSX 19.2 kb)
DOI: 10.6084/m9.figshare.c.3643709_d2.v1
title: Additional file 2: of GWASeq: targeted re-sequencing follow up to GWAS

description: Regional plots of associations for each targeted region. rs numbers and purple circles indicate the focal GWAS SNP that the region was selected around. Colored circles indicate degree of LD among SNPs. Grey circles indicate novel SNPs that lack LD information based on the 2012 release of the 1000 Genomes data. The rs number at figure top is centered around the location of the focal SNP. (ZIP 1921Â kb)
DOI: 10.6084/m9.figshare.c.3643679_d11.v1
title: Additional file 10: of Analysis of transcriptome in hickory (Carya cathayensis), and uncover the dynamics in the hormonal signaling pathway during graft process

description: The phylogenetic data of auxin signaling pathway and cytokinin signaling pathway genes. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3643679_d10.v1
title: Additional file 8: of Analysis of transcriptome in hickory (Carya cathayensis), and uncover the dynamics in the hormonal signaling pathway during graft process

description: The expression level of auxin signaling pathway related genes. (XLSX 15 kb)
DOI: 10.15468/dl.skng3n
title: Occurrence Download

description: A dataset containing 275 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fratercula cirrhata (Pallas, 1769)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 275 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035609-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3643232_d8.v1
title: Additional file 4: of Characterization and comparative profiling of the small RNA transcriptomes in two phases of flowering in Cymbidium ensifolium

description: The expression of the novel miRNA in four libraries from two flowering phases.
DOI: 10.6084/m9.figshare.c.3643232_d7.v1
title: Additional file 2: of Characterization and comparative profiling of the small RNA transcriptomes in two phases of flowering in Cymbidium ensifolium

description: The conserved miRNA family among all of the species.
DOI: 10.6084/m9.figshare.c.3643232_d5.v1
title: Additional file 9: of Characterization and comparative profiling of the small RNA transcriptomes in two phases of flowering in Cymbidium ensifolium

description: The KEGG pathway enrichment of the target genes. The genes were targeted by differently expressed miRNA between two floral development phases in C. ensifolium.
DOI: 10.6084/m9.figshare.c.3643232_d6.v1
title: Additional file 1: of Characterization and comparative profiling of the small RNA transcriptomes in two phases of flowering in Cymbidium ensifolium

description: Real-time quantitative PCR primer sequences for candidate miRNAs.
DOI: 10.6084/m9.figshare.c.3643232_d4.v1
title: Additional file 8: of Characterization and comparative profiling of the small RNA transcriptomes in two phases of flowering in Cymbidium ensifolium

description: Gene ontology (GO) enrichment of the target genes. The genes were targeted by differently expressed miRNA between two floral development phases in C. ensifolium.
DOI: 10.6084/m9.figshare.c.3643232_d2.v1
title: Additional file 6: of Characterization and comparative profiling of the small RNA transcriptomes in two phases of flowering in Cymbidium ensifolium

description: The comparison of seven differentially expressed miRNA between RT-qPCR and RNA-seq.
DOI: 10.6084/m9.figshare.c.3643232_d1.v1
title: Additional file 5: of Characterization and comparative profiling of the small RNA transcriptomes in two phases of flowering in Cymbidium ensifolium

description: Annotation of unigenes targeted by miRNA.
DOI: 10.6084/m9.figshare.c.3643202_d10.v1
title: Additional file 10 of Multivariate models from RNA-Seq SNVs yield candidate molecular targets for biomarker discovery: SNV-DA

description: Breast: gene expression model. (CSV 15.1 kb)
DOI: 10.6084/m9.figshare.c.3643202_d8.v1
title: Additional file 4 of Multivariate models from RNA-Seq SNVs yield candidate molecular targets for biomarker discovery: SNV-DA

description: Breast: intronic SNV model. (CSV 17.2 kb)
DOI: 10.6084/m9.figshare.c.3643202_d9.v1
title: Additional file 1 of Multivariate models from RNA-Seq SNVs yield candidate molecular targets for biomarker discovery: SNV-DA

description: NSCLC: Nonsynonymous Exonic SNV model. (CSV 49.1 kb)
DOI: 10.6084/m9.figshare.c.3643202_d7.v1
title: Additional file 8 of Multivariate models from RNA-Seq SNVs yield candidate molecular targets for biomarker discovery: SNV-DA

description: Breast: up and downstream SNVs model. (CSV 22.1 kb)
DOI: 10.6084/m9.figshare.c.3643202_d5.v1
title: Additional file 5 of Multivariate models from RNA-Seq SNVs yield candidate molecular targets for biomarker discovery: SNV-DA

description: Breast: 3â   UTR SNV model. (CSV 6.47 kb)
DOI: 10.6084/m9.figshare.c.3643202_d6.v1
title: Additional file 7 of Multivariate models from RNA-Seq SNVs yield candidate molecular targets for biomarker discovery: SNV-DA

description: Breast: ncRNA SNV model. (CSV 57.8 kb)
DOI: 10.6084/m9.figshare.c.3643202_d4.v1
title: Additional file 2 of Multivariate models from RNA-Seq SNVs yield candidate molecular targets for biomarker discovery: SNV-DA

description: Breast: all-SNVs model. (CSV 8.93 kb)
DOI: 10.6084/m9.figshare.c.3643202_d3.v1
title: Additional file 6 of Multivariate models from RNA-Seq SNVs yield candidate molecular targets for biomarker discovery: SNV-DA

description: Breast: intergenic SNV model. (CSV 17.6 kb)
DOI: 10.6084/m9.figshare.c.3643202_d2.v1
title: Additional file 9 of Multivariate models from RNA-Seq SNVs yield candidate molecular targets for biomarker discovery: SNV-DA

description: NSCLC: gene expression model. (CSV 13.9 kb)
DOI: 10.6084/m9.figshare.c.3643055_d3.v1
title: Additional file 8: of Potential contribution of the uterine microbiome in the development of endometrial cancer

description: Confounder analysis. (XLSX 37 kb)
DOI: 10.15468/dl.5fp5md
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alca cirrhata Pallas, 1769",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035610-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3642746_d3.v1
title: Additional file 3: of The complexity of human infected AIV H5N6 isolated from China

description: 2c, 3c, 7c, and 8c: Four accuracy phylogenetic trees involved in this study. 2c, PB1 (pdf 29.7 kb); 3c, PA (pdf 29.7 kb); 7c, MP (pdf 29.6 kb); 8c, NEP (pdf 29.5 kb). 1c (PB2), 4c (HA), 5c (NP), and 6c (NA) were put into the main text as Fig. 1 and Fig. 2. (ZIP 106 kb)
DOI: 10.6084/m9.figshare.c.3642746_d2.v1
title: Additional file 1: of The complexity of human infected AIV H5N6 isolated from China

description: 1aâ  8a: Matrices of genomes involved in this study. 1a, PB2 (fas 4.73mb); 2a, PB1 (fas 4.72mb); 3a, PA (fas 4.45mb); 4a, HA (fas 1.88mb); 5a, NP (fas 3.26mb); 6a, NA (fas 1.62mb); 7a, MP (fas 2.33mb); 8a, NEP (fas 1.99mb). (ZIP 1 mb)
DOI: 10.6084/m9.figshare.c.3642725_d3.v1
title: MOESM3 of Integrated chemometric fingerprints of antioxidant activities and HPLCâ  DADâ  CL for assessing the quality of the processed roots of Polygonum multiflorum Thunb. (Heshouwu)

description: Additional files 3. Comparison of activities in scavenging three ROS between different HSW samples.
DOI: 10.6084/m9.figshare.c.3642746_d1.v1
title: Additional file 2: of The complexity of human infected AIV H5N6 isolated from China

description: 1bâ  8b: Large-scale phylogenetic trees involved in this study. 1b, PB2 (mts 17.0mb); 2b, PB1 (mts 16.8mb); 3b, PA (mts 16.7mb); 4b, HA (mts 4.90mb); 5b, NP (mts 17.5mb); 6b, NA (mts 4.62mb); 7b, MP (mts 18.7mb); 8b, NEP (mts 17.3mb). (ZIP 18 mb)
DOI: 10.6084/m9.figshare.c.3642692_d3.v1
title: Additional file 1: Table S1. of Exome sequencing in mostly consanguineous Arab families with neurologic disease provides a high potential molecular diagnosis rate

description: Summary of clinical features and disease/candidate variants identified. The major clinical features and the disease/candidate variantsÂ as well as the prediction scores and classifications for damaging effect of the variants are listed. For Polyphen2 (Pph2), D for probably damaging, P for possibly damaging, and B for benign. For LRT, D for deleterious, N for neutral, and U for unknown. For MutationTaster (MT), A for disease causing automatic, D for disease causing, N for polymorphism, and P for polymorphism automatic. Moreover, this table includes the ranking and ACMG criteria for each gene, the supporting evidence and the discussion of other variants, as well as the frequency/number of the variants in our internal CMG database, Atherosclerosis Risk in Communities Study (ARIC), ExAC database, Thousand Genome project, and NHLBI GO Exome Sequencing Project (ESP). pLI: probability of loss-of-function (LoF) intolerance. Table S2. Categorization of families based on major clinical features. Y: the family has this clinical feature; N: the family does not have this clinical feature. Families with brain malformations were not counted in the ID/DD groups, even if this feature was present. Percentages of families with each feature are shown at the bottom of the table. Table S3. Categorization of disease genes/candidates by major clinical features. Table S4. AOH metrics for the probands carrying known or candidate disease genes. Table S5. Raw data of ddPCR in RPS6KC1 in family 025. Table S6. Homologs of disease genes/candidates between human and fruit fly. The HCOP website ( http://www.genenames.org/cgi-bin/hcop ) was used to identify the fly homologs of the identified disease/candidate genes, listed in the upper panel. These fly homologs are then used to search for additional human homologs to find paralogs of the original human genes, as shown in the bottom part of the list. (XLS 165Â kb)
DOI: 10.6084/m9.figshare.c.3642692_d1.v1
title: Additional file 2: Figure S1. of Exome sequencing in mostly consanguineous Arab families with neurologic disease provides a high potential molecular diagnosis rate

description: Thirty one Arab family pedigrees in this study. Family numbers are given as numeric series and individual IDs as BAB series. They are arranged into: known variant in known gene (green), novel variant in known gene (light red), phenotypic expansion (blue), novel disease candidates (light orange), and unsolved cases (gray). Gray shading indicates a minor phenotype. Figure S2. Workflow of WES analysis. The SNVs predicted to have (probably) damaging effects are filtered with the allele frequency data from Atherosclerosis Risk in Communities Study (ARIC) ( http://drupal.cscc.unc.edu/aric/ ), NHLBI GO Exome Sequencing Project (ESP), Seattle, WA ( http://evs.gs.washington.edu/EVS/ ), 1000 Genomes Project ( http://www.1000genomes.org ), and Exome Aggregation Consortium (ExAC) Cambridge, MA ( http://exac.broadinstitute.org ) [Oct 2014] and Baylor-Hopkins Center for Mendelian Genomics (BHCMG) database with more than 5,000 exomes. WES data are also used to predict CNVs. The information of the paralogs of candidate genes provides supporting evidence for the findings. Moreover, cross-database gene mining identifies additional cases. Figure S3. CNV prediction identifies a homozygous deletion in GRID2 in BAB6883. a HMZDelFinder reveals a homozygous deletion in GRID2 (chr4:g.94006145_94032105del). The lower threshold for RPKM is 0.5 and upper threshold is 1. b This deletion is confirmed by clinical array (chr4:g.93,985,826_94,074,965del) and segregates with phenotypes in the family. c Breakpoint junction maps to chr4:g.93,978,239_94,078,203del. Figure S4. Network analysis of known and candidate genes. a Temporal RNA expression in brain. b The protein-protein interaction network: Interaction STRING scores are displayed in an upper triangular heatmap. Low and high values are represented in blue and red, respectively. Figure S5. Protein interaction network of the candidate genes. a KDM2B and MLLT1 are in the chromatin remodeling sub-network. b FOXP4 and its paralogs. c KIF5B and its paralogs. d GRM7 and its related members. (ZIP 4859 kb)
DOI: 10.6084/m9.figshare.c.3642668_d10.v1
title: Additional file 1: Table S1. of MRMPlus: an open source quality control and assessment tool for SRM/MRM assay development

description: Sample Skyline-derived response curve experiment input to MRMPlus. (TXT 128Â kb)
DOI: 10.6084/m9.figshare.c.3642668_d9.v1
title: Additional file 4: Table S4. of MRMPlus: an open source quality control and assessment tool for SRM/MRM assay development

description: Sample Skyline-derived repeatability experiment input to MRMPlus. (TXT 199Â kb)
DOI: 10.6084/m9.figshare.c.3642668_d8.v1
title: Additional file 9: Table S7. of MRMPlus: an open source quality control and assessment tool for SRM/MRM assay development

description: Comparing and contrasting â  Repeatabilityâ   measures between MRMPlus and PanoramaWeb. (XLSX 9Â kb)