cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc287nhp
title: CCDC 2092732: Experimental Crystal Structure Determination

description: Related Article: Yibing Wu, Rongxin Wang, Rui Lin, Xuee Xu, Xingye Zhang, Osamah Alsalman, Yu Qiu, Ashraf Uddin, Xinhua Ouyang|2023|Chem.Eng.Journal|465|142929|doi:10.1016/j.cej.2023.142929
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/5551923
title: Country Data
DOI: 10.5281/zenodo.7876731
title: Revised database of the Soil Information System of Latin America and the Caribbean, SISLAC version 1.2

description: The SISLAC_database version 1.2 contains the revised version of the SISLAC database in comma-separated values (csv) format. This database was reviewed and the inconsistencies found in the profiles and in the description of their horizons were corrected. The key field between both tables is the profile identifier, column <strong><em>profile_id</em></strong>.
DOI: 10.5281/zenodo.7876730
title: Revised database of the Soil Information System of Latin America and the Caribbean, SISLAC version 1.2

description: The SISLAC_database version 1.2 contains the revised version of the SISLAC database in comma-separated values (csv) format. This database was reviewed and the inconsistencies found in the profiles and in the description of their horizons were corrected. The key field between both tables is the profile identifier, column <strong><em>profile_id</em></strong>.
DOI: 10.6084/m9.figshare.22351417
title: Excel Files

description: Excel files
DOI: 10.6084/m9.figshare.22351432
title: Prism Files

description: Prism Files
DOI: 10.6084/m9.figshare.22351432.v1
title: Prism Files

description: Prism Files
DOI: 10.6084/m9.figshare.22720576
title: Naive CD8 T cells Dataset sequencing Fig4 and S4

description: Naive CD8 T cells Dataset sequencing Fig4 and S4. Corresponds to Cell Ranger output.
DOI: 10.6084/m9.figshare.22720576.v1
title: Naive CD8 T cells Dataset sequencing Fig4 and S4

description: Naive CD8 T cells Dataset sequencing Fig4 and S4. Corresponds to Cell Ranger output.
DOI: 10.6084/m9.figshare.3761562.v2570
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.22002/qw1m6-1w831
title: .RAW, .isox, and .txt files associated with "Accuracy and Precision of ESI-Orbitrap-IRMS Observations of Hours to Tens of Hours via Reservoir Injection"

description: This contains .RAW files for all of the Orbitrap-IRMS experiments presented in "A Reservoir Injection Method for Orbitrap Based Isotope Ratio Measurements of Arbitrary Duration"
DOI: 10.5281/zenodo.7877612
title: Dataset of "Ultrafast Transverse Modulation of Free Electrons by Interaction with Shaped Optical Fields"

description: This upload includes the experimentally measured and theoretically calculated energy-filtered electron spatial distributions and light profiles showing the electron beam modulation via transversely shaped light fields using an external spatial light modulator.
DOI: 10.5281/zenodo.7877611
title: Dataset of "Ultrafast Transverse Modulation of Free Electrons by Interaction with Shaped Optical Fields"

description: This upload includes the experimentally measured and theoretically calculated energy-filtered electron spatial distributions and light profiles showing the electron beam modulation via transversely shaped light fields using an external spatial light modulator.
DOI: 10.5281/zenodo.7877424
title: Output Data: gcam_v6.0_seasia

description: Output databases from the Southeast Asia branch of GCAM.
DOI: 10.5281/zenodo.7877423
title: Output Data: gcam_v6.0_seasia

description: Output databases from the Southeast Asia branch of GCAM.
DOI: 10.6084/m9.figshare.20982826
title: Badmus et al. kinome data and reports.

description: Supplemental Tables, Full Kinome Reports, Log2 Fold Change of Family and Individual Kinases, and Raw Data Files
DOI: 10.6084/m9.figshare.20982826.v1
title: Badmus et al. kinome data and reports.

description: Supplemental Tables, Full Kinome Reports, Log2 Fold Change of Family and Individual Kinases, and Raw Data Files
DOI: 10.5281/zenodo.7347592
title: Mechanisms of the reaction of elemental sulfur and polysulfides with cyanide and phosphines

description: Gaussian 16 output files for all computed structures for "<strong>Mechanisms of the reaction of elemental sulfur and polysulfides with cyanide and phosphines</strong>". <em>Chemistry - A European Journal, <strong>2023</strong>, </em>e202203906. DOI: 10.1002/chem.202203906
DOI: 10.5281/zenodo.7347591
title: Mechanisms of the reaction of elemental sulfur and polysulfides with cyanide and phosphines

description: Gaussian 16 output files for all computed structures for "<strong>Mechanisms of the reaction of elemental sulfur and polysulfides with cyanide and phosphines</strong>". <em>Chemistry - A European Journal, <strong>2023</strong>, </em>e202203906. DOI: 10.1002/chem.202203906
DOI: 10.25422/azu.data.20736700
title: Plant and Animal Phenophase Definitions

description: The USA National Phenology Network’s (USA-NPN) standardized phenology monitoring protocols were designed to capture the seasonal life cycle stages of plants and animals across polar, temperate, tropical, and water-limited ecosystems. The protocols can be tailored to any sampling density or frequency and can be used either within the <em>Nature’s Notebook</em> observation program, or independently. The resulting data can be used to answer a variety of scientific and management questions from local to continental scales. The protocols are specific to major taxonomic groups and consist of a suite of “phenophases”. A phenophase is an observable stage or phase in the annual life cycle of a plant or animal that can be defined by a start and end point. For plants, phenophases identify the presence or absence of structures (e.g., leaves, flowers, fruits) on an individual plant that is observed repeatedly over the course of one or more growing seasons. For animals, phenophases identify the presence or absence of behaviors such as breeding, migration, and use of food resources. Intensity or abundance measures for each phenophase indicate the degree to which the phenophase is expressed. They represent either an estimate of the number of plant structures or individual animals that are present or engaged in a behavior, or an estimate of the percentage of plant structures observed in a particular state (e.g., percent of flowers that are open). In this Plant and Animal Phenophase Definitions document, the phenophases in use for major plant and animal taxonomic groups are summarized in tables, and the full phenophase definitions and associated intensity or abundance measures are included in subsequent sections. The multiple files represent updates over time to reduce confusion in the phenophase definitions, include new taxonomic groups, and expand protocols to more fully capture certain life cycle stages. Be sure to use the most current version of the file. Also note the version number for this record does not necessarily correspond to the version number of the most recent Definitions file. <br> <em>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</em>
DOI: 10.25422/azu.data.20736700.v4
title: Plant and Animal Phenophase Definitions

description: The USA National Phenology Network’s (USA-NPN) standardized phenology monitoring protocols were designed to capture the seasonal life cycle stages of plants and animals across polar, temperate, tropical, and water-limited ecosystems. The protocols can be tailored to any sampling density or frequency and can be used either within the <em>Nature’s Notebook</em> observation program, or independently. The resulting data can be used to answer a variety of scientific and management questions from local to continental scales. The protocols are specific to major taxonomic groups and consist of a suite of “phenophases”. A phenophase is an observable stage or phase in the annual life cycle of a plant or animal that can be defined by a start and end point. For plants, phenophases identify the presence or absence of structures (e.g., leaves, flowers, fruits) on an individual plant that is observed repeatedly over the course of one or more growing seasons. For animals, phenophases identify the presence or absence of behaviors such as breeding, migration, and use of food resources. Intensity or abundance measures for each phenophase indicate the degree to which the phenophase is expressed. They represent either an estimate of the number of plant structures or individual animals that are present or engaged in a behavior, or an estimate of the percentage of plant structures observed in a particular state (e.g., percent of flowers that are open). In this Plant and Animal Phenophase Definitions document, the phenophases in use for major plant and animal taxonomic groups are summarized in tables, and the full phenophase definitions and associated intensity or abundance measures are included in subsequent sections. The multiple files represent updates over time to reduce confusion in the phenophase definitions, include new taxonomic groups, and expand protocols to more fully capture certain life cycle stages. Be sure to use the most current version of the file. Also note the version number for this record does not necessarily correspond to the version number of the most recent Definitions file. <em>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</em>
DOI: 10.5281/zenodo.7877727
title: scripts to reproduce simulations from Simulations of dynamo action in slowly rotating M dwarfs: Dependence on dimensionless parameters

description: Scripts with .in and .local files to re-run the simulations presented in the paper Simulations of dynamo action in slowly rotating M dwarfs: Dependence on dimensionless parameters.
DOI: 10.5281/zenodo.7877726
title: scripts to reproduce simulations from Simulations of dynamo action in slowly rotating M dwarfs: Dependence on dimensionless parameters

description: Scripts with .in and .local files to re-run the simulations presented in the paper Simulations of dynamo action in slowly rotating M dwarfs: Dependence on dimensionless parameters.
DOI: 10.6084/m9.figshare.22257352.v1
title: RAW DATA FILE: In silico drug repurposing using molecular docking and dynamics to target the protein interaction between the SARS-CoV -2 S-glycoprotein and the ACE2 receptor

description: Vitrual screening project file with raw data and PDB structures of hit compounds in docked conformations
DOI: 10.6084/m9.figshare.22257352.v2
title: RAW DATA FILE: In silico drug repurposing using molecular docking and dynamics to target the protein interaction between the SARS-CoV -2 S-glycoprotein and the ACE2 receptor

description: Vitrual screening project file with raw data and PDB structures of hit compounds in docked conformations
DOI: 10.6084/m9.figshare.22257352.v3
title: UNDERLYING DATA: In silico drug repurposing using molecular docking and dynamics to target the protein interaction between the SARS-CoV -2 S-glycoprotein and the ACE2 receptor

description: Vitrual screening project file with raw data and PDB structures of hit compounds in docked conformations
DOI: 10.5281/zenodo.7805407
title: Data underlying OpenPBTA Manuscript Figures and Molecular Alterations

description: This upload contains CSV files that represent data contained in plots shown in the OpenPBTA manuscript. It is intended to facilitate inspection of the underlying data shown in each figure and to explicitly capture which samples are included in figures (where applicable). Please see the README included in the upload for more information about individual files. To <strong>reproduce the figures</strong>, we recommend using the code in the analysis repository: https://github.com/AlexsLemonade/OpenPBTA-analysis. Please see the <code>figures/</code> directory documentation in the repository and the documentation for figure generation scripts (<code>figures/scripts/README.md</code>). The version of the upload corresponds to the version of the release in the analysis repository.
DOI: 10.5281/zenodo.7805408
title: Data underlying OpenPBTA Manuscript Figures and Molecular Alterations

description: This upload contains CSV files that represent data contained in plots shown in the OpenPBTA manuscript. It is intended to facilitate inspection of the underlying data shown in each figure and to explicitly capture which samples are included in figures (where applicable). Please see the README included in the upload for more information about individual files. To <strong>reproduce the figures</strong>, we recommend using the code in the analysis repository: https://github.com/AlexsLemonade/OpenPBTA-analysis. Please see the <code>figures/</code> directory documentation in the repository and the documentation for figure generation scripts (<code>figures/scripts/README.md</code>). The version of the upload corresponds to the version of the release in the analysis repository.
DOI: 10.5281/zenodo.7877739
title: Data underlying OpenPBTA Manuscript Figures and Molecular Alterations

description: This upload contains CSV files that represent data contained in plots shown in the OpenPBTA manuscript. It is intended to facilitate inspection of the underlying data shown in each figure and to explicitly capture which samples are included in figures (where applicable). Please see the README included in the upload for more information about individual files. To <strong>reproduce the figures</strong>, we recommend using the code in the analysis repository: https://github.com/AlexsLemonade/OpenPBTA-analysis. Please see the <code>figures/</code> directory documentation in the repository and the documentation for figure generation scripts (<code>figures/scripts/README.md</code>). The version of the upload corresponds to the version of the release in the analysis repository.
DOI: 10.5281/zenodo.7877716
title: Domestic Violence Against Women Questionnaire

description: Domestic Violence Against Women Questionnaire The questionnaire was adapted from published similar articles and our own experience covering the general characteristics of the participating women, exposure to domestic violence, family characteristics, and husband characteristics
DOI: 10.5281/zenodo.7877715
title: Domestic Violence Against Women Questionnaire

description: Domestic Violence Against Women Questionnaire The questionnaire was adapted from published similar articles and our own experience covering the general characteristics of the participating women, exposure to domestic violence, family characteristics, and husband characteristics
DOI: 10.5281/zenodo.7308630
title: Data for: Heat induces multiomic and phenotypic stress propagation in zebrafish embryos

description: This contains the data for the manuscript Feugere et al., "Heat induces multiomic and phenotypic stress propagation in zebrafish embryos" (2023). Zebrafish embryos were exposed to thermal stress ("TS") and stress metabolites ("SM") released by heat-stressed conspecifics in a two-way factorial design ("TSxSM"). The folder includes raw molecular data (cortisol levels, HSP70 protein levels, and gene expression acquired with LAMP and RNA-seq) and raw phenotypic data (morphology, hatching, survival, and behaviour) of zebrafish <em>Danio rerio </em>at 1 day and 4 days of development. The .csv files contain all quantitative data, whilst the .tab files contain the gene count data required for gene expression analysis. The data were analysed in R using the code shared in the "TSxSM2.stats.Rmd" file. The "Metadata" document provides the reader with an extensive description of each file.
DOI: 10.5281/zenodo.7308629
title: Data for: Heat induces multiomic and phenotypic stress propagation in zebrafish embryos

description: This contains the data for the manuscript Feugere et al., "Heat induces multiomic and phenotypic stress propagation in zebrafish embryos" (2023). Zebrafish embryos were exposed to thermal stress ("TS") and stress metabolites ("SM") released by heat-stressed conspecifics in a two-way factorial design ("TSxSM"). The folder includes raw molecular data (cortisol levels, HSP70 protein levels, and gene expression acquired with LAMP and RNA-seq) and raw phenotypic data (morphology, hatching, survival, and behaviour) of zebrafish <em>Danio rerio </em>at 1 day and 4 days of development. The .csv files contain all quantitative data, whilst the .tab files contain the gene count data required for gene expression analysis. The data were analysed in R using the code shared in the "TSxSM2.stats.Rmd" file. The "Metadata" document provides the reader with an extensive description of each file.
DOI: 10.15139/s3/oilsze
title: Devin Lane - POLI 784 Replication Extension

description: Replication and extension of Seth Hill (2017) Learning Together Slowly.
DOI: 10.25345/c57s7j31q
title: MassIVE MSV000091820 - mARC1 knockdown protects liver from diet-induced NASH in mouse
title: Human genetic studies have identified several MARC1 variants as protective against non-alcoholic fatty liver diseases (NAFLD). The MARC1 variants are associated with reduced lipid profiles, liver enzymes, and liver-related mortality. However, the role of mitochondrial amidoxime reducing component 1 (mARC1), encoded by MARC1, in NAFLD is still unknown and the therapeutic potential of this target has never been developed. Given that mARC1 is mainly expressed in hepatocytes, we developed an N-acetylgalactosamine conjugated mouse mARC1 siRNA to address this. In ob/ob mice, knockdown of mARC1 in mouse hepatocytes resulted in decreased liver weight, serum lipid enzymes, low-density lipoprotein cholesterol, and liver triglycerides. Loss of mARC1 also improved the lipid profiles and attenuated liver pathological changes in two diet-induced nonalcoholic steatohepatitis (NASH) mouse models. A comprehensive analysis of mARC1-deficient liver in NASH by metabolomics, proteomics, and lipidomics showed that mARC1 knockdown partially restored metabolites and lipids altered by diets. Taken together, loss of mARC1 protects mouse liver from NASH, suggesting a potential therapeutic approach of NASH by downregulation of mARC1 in hepatocytes.
DOI: 10.5517/ccdc.csd.cc2f5m8j
title: CCDC 2239727: Experimental Crystal Structure Determination

description: Related Article: Junru Deng, Lin Wang, Qingyu Jin, Jia Zeng, Jingwen Xu, Xiangjiu He, Yihai Wang|2023|Phytochemistry|210|113667|doi:10.1016/j.phytochem.2023.113667
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.17075375
title: scAgeComShiny data

description: R rda file that contains processed data to be used with the Shiny app scAgeComShiny.
DOI: 10.6084/m9.figshare.17075375.v1
title: scAgeComShiny data

description: R rda file that contains processed data to be used with the Shiny app scAgeComShiny.
DOI: 10.5281/zenodo.7877719
title: SIDER Side Effect Resource

description: Unwanted side effects of drugs are a burden on patients and a severe impediment in the development of new drugs. At the same time, adverse drug reactions (ADRs) recorded during clinical trials are an important source of human phenotypic data. It is therefore essential to combine data on drugs, targets and side effects into a more complete picture of the therapeutic mechanism of actions of drugs and the ways in which they cause adverse reactions. To this end, we have created the SIDER (‘Side Effect Resource’, http://sideeffects.embl.de) database of drugs and ADRs. The current release, SIDER 4, contains data on 1430 drugs, 5880 ADRs and 140 064 drug–ADR pairs, which is an increase of 40% compared to the previous version. For more fine-grained analyses, we extracted the frequency with which side effects occur from the package inserts. This information is available for 39% of drug–ADR pairs, 19% of which can be compared to the frequency under placebo treatment. SIDER furthermore contains a data set of drug indications, extracted from the package inserts using Natural Language Processing. These drug indications are used to reduce the rate of false positives by identifying medical terms that do not correspond to ADRs.
description: {"references": ["Michael Kuhn, Ivica Letunic, Lars Juhl Jensen, Peer Bork, The SIDER database of drugs and side effects, Nucleic Acids Research, Volume 44, Issue D1, 4 January 2016, Pages D1075\u2013D1079, https://doi.org/10.1093/nar/gkv1075"]}
DOI: 10.5281/zenodo.7877720
title: SIDER Side Effect Resource

description: Unwanted side effects of drugs are a burden on patients and a severe impediment in the development of new drugs. At the same time, adverse drug reactions (ADRs) recorded during clinical trials are an important source of human phenotypic data. It is therefore essential to combine data on drugs, targets and side effects into a more complete picture of the therapeutic mechanism of actions of drugs and the ways in which they cause adverse reactions. To this end, we have created the SIDER (‘Side Effect Resource’, http://sideeffects.embl.de) database of drugs and ADRs. The current release, SIDER 4, contains data on 1430 drugs, 5880 ADRs and 140 064 drug–ADR pairs, which is an increase of 40% compared to the previous version. For more fine-grained analyses, we extracted the frequency with which side effects occur from the package inserts. This information is available for 39% of drug–ADR pairs, 19% of which can be compared to the frequency under placebo treatment. SIDER furthermore contains a data set of drug indications, extracted from the package inserts using Natural Language Processing. These drug indications are used to reduce the rate of false positives by identifying medical terms that do not correspond to ADRs.
description: {"references": ["Michael Kuhn, Ivica Letunic, Lars Juhl Jensen, Peer Bork, The SIDER database of drugs and side effects, Nucleic Acids Research, Volume 44, Issue D1, 4 January 2016, Pages D1075\u2013D1079, https://doi.org/10.1093/nar/gkv1075"]}
DOI: 10.5281/zenodo.7877709
title: test_carolina_dmdb

description: Just a test
DOI: 10.5281/zenodo.7877710
title: test_carolina_dmdb

description: Just a test
DOI: 10.5517/ccdc.csd.cc2f1yk0
title: CCDC 2236202: Experimental Crystal Structure Determination

description: Related Article: Junki Ochi, Takumi Yanagihara, Kazuo Tanaka, Yoshiki Chujo|2023|Phys.Chem.Chem.Phys.(PCCP)|25|11839|doi:10.1039/D3CP00334E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.