cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14728579.v1
title: Additional file 1 of How are emotional distress and reassurance expressed in medical consultations for people with long-term conditions who were unable to receive curative treatment? A pilot observational study with huntington’s disease and prostate cancer

description: Additional file 1.
DOI: 10.6084/m9.figshare.14728520.v1
title: Additional file 3 of Low shifts in salinity determined assembly processes and network stability of microeukaryotic plankton communities in a subtropical urban reservoir

description: Additional file 2.
DOI: 10.6084/m9.figshare.14728511.v1
title: Additional file 2 of Birth prevalence of phenylalanine hydroxylase deficiency: a systematic literature review and meta-analysis

description: Additional file 2. Data extraction table. 238 birth prevalence estimates from 85 publications.
DOI: 10.6084/m9.figshare.14728510.v1
title: Additional file 7 of Dynamics of alternative splicing during somatic cell reprogramming reveals functions for RNA-binding proteins CPSF3, hnRNP UL1, and TIA1

description: Additional file 7: Table S6. Sequences of primers and shRNAs used in this study.
DOI: 10.6084/m9.figshare.14728507.v1
title: Additional file 6 of Dynamics of alternative splicing during somatic cell reprogramming reveals functions for RNA-binding proteins CPSF3, hnRNP UL1, and TIA1

description: Additional file 6: Table S5. Gene Ontology terms enriched in CPSF3-, UL1- and TIA1-dependent events. This table includes outputs from GOrilla and REViGO analyses.
DOI: 10.6084/m9.figshare.14728504.v1
title: Additional file 5 of Dynamics of alternative splicing during somatic cell reprogramming reveals functions for RNA-binding proteins CPSF3, hnRNP UL1, and TIA1

description: Additional file 5: Table S4. CPSF3-, UL1- and TIA1-dependent and -independent events. This table includes the sets of control cassette exons (CEx) used for KD (CPSF3- and UL1-dependent CEx) or OE (TIA1-dependent CEx).
DOI: 10.6084/m9.figshare.14728501.v1
title: Additional file 4 of Dynamics of alternative splicing during somatic cell reprogramming reveals functions for RNA-binding proteins CPSF3, hnRNP UL1, and TIA1

description: Additional file 4: Table S3. Gene expression levels of RBPs correlating with AS clusters (positive and negative predicted regulators).
DOI: 10.6084/m9.figshare.14728498.v1
title: Additional file 3 of Dynamics of alternative splicing during somatic cell reprogramming reveals functions for RNA-binding proteins CPSF3, hnRNP UL1, and TIA1

description: Additional file 3: Table S2. Cassette exon events differentially spliced in MEF reprogramming. This table includes the information about the overlap with B cell reprogramming. Data for other types of events is available upon request.
DOI: 10.6084/m9.figshare.14728495.v1
title: Additional file 2 of Dynamics of alternative splicing during somatic cell reprogramming reveals functions for RNA-binding proteins CPSF3, hnRNP UL1, and TIA1

description: Additional file 2: Table S1. Cassette exon events differentially spliced in B cell reprogramming. This table includes the information about the AS cluster each exon belongs to and the predicted effect on its transcript. Data for other types of events is available upon request.
DOI: 10.6084/m9.figshare.14728683
title: H3K27ac P1_sham rep1 mm10

description: For UCSC
DOI: 10.6084/m9.figshare.14728487.v1
title: Additional file 4 of The global gene expression outline of the bovine blastocyst: reflector of environmental conditions and predictor of developmental capacity

description: Additional file 4: Table S1. The list of differentially expressed genes between CVO and NVO. Table S2. The list of differentially expressed genes between CVT and NVT. Table S3. Significant molecular functions enriched by differentially expressed genes between CVT and NVT. Table S4. DEGs common to current study (CVO vs NVO) and Hosseini et al. 2015 (ICM vs .TE) and Ozawa et al. 2012 (TE vs .ICM). Table S5. DEGs common to current study (CVT vs NVT) and Hosseini et al. 2015 (ICM vs .TE) and Ozawa et al. 2012 (TE vs .ICM). Table S6. List of differentially expressed genes between CVT vs. CVO. Table S7. List of differentially expressed probes in CVT vs. CVO representing the 3′-UTR variants. Table S8. Molecular fuctions overrepresented by DEGs idnetfied in CVT vs. CVO. Table S9. Molecular functions overrepresneted by genes differentially expressed between CVT and CVO. Table S10. DEGs common to current study (CVT vs CVO) and Hosseini et al. 2015 (ICM vs .TE) and Ozawa et al. 2012 (TE vs .ICM).
DOI: 10.6084/m9.figshare.14728683.v1
title: H3K27ac P1_sham rep1 mm10

description: For UCSC
DOI: 10.6084/m9.figshare.14728412.v1
title: Additional file 2 of Integrated microRNA and mRNA gene expression in peripheral blood mononuclear cells in response to acute psychosocial stress: a repeated-measures within-subject pilot study

description: Additional file 2: Table S2A–C. mRNA/miRNA expression pairings. Negatively correlated mRNA/miRNA pairs identified by IPA Target Filter analysis at Time Point B vs A, Time Point C vs A and Time Point C vs B are presented in Table S2A-C, respectively.
DOI: 10.6084/m9.figshare.14728409.v1
title: Additional file 1 of Integrated microRNA and mRNA gene expression in peripheral blood mononuclear cells in response to acute psychosocial stress: a repeated-measures within-subject pilot study

description: Additional file 1: Table S1A–C. Differentially Expressed mRNAs according to limma p
DOI: 10.6084/m9.figshare.14728396.v1
title: Additional file 2 of Individual and situational determinants of plastic waste sorting: an experience sampling method study protocol

description: Additional file 2. Appendix 2 - ESM items.
DOI: 10.6084/m9.figshare.14728394.v1
title: Additional file 7 of Transcriptomic analysis of caecal tissue in inbred chicken lines that exhibit heritable differences in resistance to Campylobacter jejuni

description: Additional file 7: Table S4. Significant GO Terms associated with DEGs in the caecal tonsils between line N and line 61 control birds. Upregulated GO terms are associated with genes with higher expression in line N and downregulated GO terms are associated with genes with higher expression in line 61. DEGs were identified between all six control birds of each line. FDR: False Discovery Rate.
DOI: 10.6084/m9.figshare.14728391.v1
title: Additional file 6 of Transcriptomic analysis of caecal tissue in inbred chicken lines that exhibit heritable differences in resistance to Campylobacter jejuni

description: Additional file 6: Table S3. DEGs in the caecal tonsils between line N and line 61 control birds. Analysis compares the gene expression of all six control birds for each line. A fold change greater than 1 indicates genes more highly expressed in line N whereas a fold change less than 1 indicates genes more highly expressed in line 61. FC: fold change, FDR: False Discovery Rate.
DOI: 10.6084/m9.figshare.14728382.v1
title: Additional file 3 of Transcriptomic analysis of caecal tissue in inbred chicken lines that exhibit heritable differences in resistance to Campylobacter jejuni

description: Additional file 3: Table S2. Significant GO Terms associated with DEGs in the caecal tonsils between infected and control line 61 birds at 1 dpi. DEGs were identified between 3 infected and 3 control birds. FDR: False Discovery Rate.
DOI: 10.6084/m9.figshare.14728379.v1
title: Additional file 2 of Transcriptomic analysis of caecal tissue in inbred chicken lines that exhibit heritable differences in resistance to Campylobacter jejuni

description: Additional file 2: Table S1. DEGs in the caecal tonsils between control and infected line 61 birds at 1 dpi. A fold change greater than 1 indicates genes that were upregulated in infected compared to control birds whereas a fold change less than 1 indicates genes which were downregulated in infected compared to control birds. N = 3 for both groups. FC: fold change, FDR: False Discovery Rate.
DOI: 10.6084/m9.figshare.14728373.v1
title: Additional file 11 of Transcriptomic analysis of caecal tissue in inbred chicken lines that exhibit heritable differences in resistance to Campylobacter jejuni

description: Additional file 11: Table S6. Primer sequences for qRT-PCR
DOI: 10.6084/m9.figshare.14728370.v1
title: Additional file 10 of Transcriptomic analysis of caecal tissue in inbred chicken lines that exhibit heritable differences in resistance to Campylobacter jejuni

description: Additional file 10: Table S5. STAR Alignment statistics for RNA-Seq transcript reads. l6: line 61, ln: line N, i: infected, c: control, b: bird, dpi: days post-infection.
DOI: 10.3886/e141681
title: Keeping kids in care: Reducing administrative burden in state Child Care Development Fund policy

description: With limited federal requirements for block grants, states have developed very different welfare policies, often with onerous recertification or reporting requirements, creating barriers to continuous program enrollment. Examined through the framework of Administrative Burden, our study examines how changes to burdensome policies in states’ Child Care Development Fund (CCDF) programs affect the length of children’s continuous enrollment in child care through the CCDF program, known as subsidy “spells.” We exploit state-level changes in three key policies during a 10-year period (2004-2013) that capture administrative burden: (1) length of eligibility redetermination; (2) reporting requirements for income changes; and (3) grace period for care before termination. Using state fixed effects analyses in a sample of 38 states using data from the Administration for Children and Families and multiple other sources, we find that administrative burdens meaningfully and robustly affect continuous enrollment in CCDF; switching to a 12-month redetermination period, as required 2014 Child Care and Development Block Grant reauthorization, increases children’s continuous enrollment in CCDF care (i.e., state median spell length) by 30 percent. In contrast, requiring all changes in family income to be reported while enrolled in CCDF decreases spell length by seven percent. Results underscore the importance of reducing administrative burdens related to compliance costs to better support low-income citizens, especially those with young children, and improve child development.
DOI: 10.3886/e141681v1
title: Keeping kids in care: Reducing administrative burden in state Child Care Development Fund policy

description: With limited federal requirements for block grants, states have developed very different welfare policies, often with onerous recertification or reporting requirements, creating barriers to continuous program enrollment. Examined through the framework of Administrative Burden, our study examines how changes to burdensome policies in states’ Child Care Development Fund (CCDF) programs affect the length of children’s continuous enrollment in child care through the CCDF program, known as subsidy “spells.” We exploit state-level changes in three key policies during a 10-year period (2004-2013) that capture administrative burden: (1) length of eligibility redetermination; (2) reporting requirements for income changes; and (3) grace period for care before termination. Using state fixed effects analyses in a sample of 38 states using data from the Administration for Children and Families and multiple other sources, we find that administrative burdens meaningfully and robustly affect continuous enrollment in CCDF; switching to a 12-month redetermination period, as required 2014 Child Care and Development Block Grant reauthorization, increases children’s continuous enrollment in CCDF care (i.e., state median spell length) by 30 percent. In contrast, requiring all changes in family income to be reported while enrolled in CCDF decreases spell length by seven percent. Results underscore the importance of reducing administrative burdens related to compliance costs to better support low-income citizens, especially those with young children, and improve child development.
DOI: 10.6084/m9.figshare.14728292.v1
title: Additional file 6 of Genomic and transcriptomic analysis of the thermophilic lignocellulose-degrading fungus Thielavia terrestris LPH172

description: Additional file 6: The complete list of all upregulated putative CAZyme encoding genes on the four tested substrates.
DOI: 10.6084/m9.figshare.14728289.v1
title: Additional file 5 of Genomic and transcriptomic analysis of the thermophilic lignocellulose-degrading fungus Thielavia terrestris LPH172

description: Additional file 5: The complete list of all expressed genes on the four tested substrates.
DOI: 10.6084/m9.figshare.14728286.v1
title: Additional file 4 of Genomic and transcriptomic analysis of the thermophilic lignocellulose-degrading fungus Thielavia terrestris LPH172

description: Additional file 4: Putative homologues of known transcription factors directly regulating (hemi)cellulose utilization in the genome of T. terrestris LPH172.
DOI: 10.6084/m9.figshare.14728285.v1
title: Additional file 3 of Detection of SARS-CoV-2 RNA using RT-LAMP and molecular beacons

description: Additional file 3: Table S2. Clinical samples and results of assays for SARS-CoV-2 and human RNA.
DOI: 10.6084/m9.figshare.14728283.v1
title: Additional file 3 of Genomic and transcriptomic analysis of the thermophilic lignocellulose-degrading fungus Thielavia terrestris LPH172

description: Additional file 3: The complete list of putative CAZy domains detected in T. terrestris LPH172 and other filamentous fungi.
DOI: 10.6084/m9.figshare.14728282.v1
title: Additional file 2 of Detection of SARS-CoV-2 RNA using RT-LAMP and molecular beacons

description: Additional file 2: Table S1. Oligonucleotides used in the LAMP-BEAC assay.
DOI: 10.6084/m9.figshare.14728579
title: Additional file 1 of How are emotional distress and reassurance expressed in medical consultations for people with long-term conditions who were unable to receive curative treatment? A pilot observational study with huntington’s disease and prostate cancer

description: Additional file 1.
DOI: 10.6084/m9.figshare.14728520
title: Additional file 3 of Low shifts in salinity determined assembly processes and network stability of microeukaryotic plankton communities in a subtropical urban reservoir

description: Additional file 2.
DOI: 10.6084/m9.figshare.14728511
title: Additional file 2 of Birth prevalence of phenylalanine hydroxylase deficiency: a systematic literature review and meta-analysis

description: Additional file 2. Data extraction table. 238 birth prevalence estimates from 85 publications.
DOI: 10.6084/m9.figshare.14728510
title: Additional file 7 of Dynamics of alternative splicing during somatic cell reprogramming reveals functions for RNA-binding proteins CPSF3, hnRNP UL1, and TIA1

description: Additional file 7: Table S6. Sequences of primers and shRNAs used in this study.
DOI: 10.6084/m9.figshare.14728507
title: Additional file 6 of Dynamics of alternative splicing during somatic cell reprogramming reveals functions for RNA-binding proteins CPSF3, hnRNP UL1, and TIA1

description: Additional file 6: Table S5. Gene Ontology terms enriched in CPSF3-, UL1- and TIA1-dependent events. This table includes outputs from GOrilla and REViGO analyses.
DOI: 10.6084/m9.figshare.14728504
title: Additional file 5 of Dynamics of alternative splicing during somatic cell reprogramming reveals functions for RNA-binding proteins CPSF3, hnRNP UL1, and TIA1

description: Additional file 5: Table S4. CPSF3-, UL1- and TIA1-dependent and -independent events. This table includes the sets of control cassette exons (CEx) used for KD (CPSF3- and UL1-dependent CEx) or OE (TIA1-dependent CEx).
DOI: 10.6084/m9.figshare.14728501
title: Additional file 4 of Dynamics of alternative splicing during somatic cell reprogramming reveals functions for RNA-binding proteins CPSF3, hnRNP UL1, and TIA1

description: Additional file 4: Table S3. Gene expression levels of RBPs correlating with AS clusters (positive and negative predicted regulators).
DOI: 10.6084/m9.figshare.14728498
title: Additional file 3 of Dynamics of alternative splicing during somatic cell reprogramming reveals functions for RNA-binding proteins CPSF3, hnRNP UL1, and TIA1

description: Additional file 3: Table S2. Cassette exon events differentially spliced in MEF reprogramming. This table includes the information about the overlap with B cell reprogramming. Data for other types of events is available upon request.
DOI: 10.6084/m9.figshare.14728495
title: Additional file 2 of Dynamics of alternative splicing during somatic cell reprogramming reveals functions for RNA-binding proteins CPSF3, hnRNP UL1, and TIA1

description: Additional file 2: Table S1. Cassette exon events differentially spliced in B cell reprogramming. This table includes the information about the AS cluster each exon belongs to and the predicted effect on its transcript. Data for other types of events is available upon request.
DOI: 10.6084/m9.figshare.14728487
title: Additional file 4 of The global gene expression outline of the bovine blastocyst: reflector of environmental conditions and predictor of developmental capacity

description: Additional file 4: Table S1. The list of differentially expressed genes between CVO and NVO. Table S2. The list of differentially expressed genes between CVT and NVT. Table S3. Significant molecular functions enriched by differentially expressed genes between CVT and NVT. Table S4. DEGs common to current study (CVO vs NVO) and Hosseini et al. 2015 (ICM vs .TE) and Ozawa et al. 2012 (TE vs .ICM). Table S5. DEGs common to current study (CVT vs NVT) and Hosseini et al. 2015 (ICM vs .TE) and Ozawa et al. 2012 (TE vs .ICM). Table S6. List of differentially expressed genes between CVT vs. CVO. Table S7. List of differentially expressed probes in CVT vs. CVO representing the 3′-UTR variants. Table S8. Molecular fuctions overrepresented by DEGs idnetfied in CVT vs. CVO. Table S9. Molecular functions overrepresneted by genes differentially expressed between CVT and CVO. Table S10. DEGs common to current study (CVT vs CVO) and Hosseini et al. 2015 (ICM vs .TE) and Ozawa et al. 2012 (TE vs .ICM).
DOI: 10.6084/m9.figshare.14728412
title: Additional file 2 of Integrated microRNA and mRNA gene expression in peripheral blood mononuclear cells in response to acute psychosocial stress: a repeated-measures within-subject pilot study

description: Additional file 2: Table S2A–C. mRNA/miRNA expression pairings. Negatively correlated mRNA/miRNA pairs identified by IPA Target Filter analysis at Time Point B vs A, Time Point C vs A and Time Point C vs B are presented in Table S2A-C, respectively.
DOI: 10.6084/m9.figshare.14728409
title: Additional file 1 of Integrated microRNA and mRNA gene expression in peripheral blood mononuclear cells in response to acute psychosocial stress: a repeated-measures within-subject pilot study

description: Additional file 1: Table S1A–C. Differentially Expressed mRNAs according to limma p
DOI: 10.6084/m9.figshare.14728396
title: Additional file 2 of Individual and situational determinants of plastic waste sorting: an experience sampling method study protocol

description: Additional file 2. Appendix 2 - ESM items.
DOI: 10.6084/m9.figshare.14728394
title: Additional file 7 of Transcriptomic analysis of caecal tissue in inbred chicken lines that exhibit heritable differences in resistance to Campylobacter jejuni

description: Additional file 7: Table S4. Significant GO Terms associated with DEGs in the caecal tonsils between line N and line 61 control birds. Upregulated GO terms are associated with genes with higher expression in line N and downregulated GO terms are associated with genes with higher expression in line 61. DEGs were identified between all six control birds of each line. FDR: False Discovery Rate.
DOI: 10.6084/m9.figshare.14728391
title: Additional file 6 of Transcriptomic analysis of caecal tissue in inbred chicken lines that exhibit heritable differences in resistance to Campylobacter jejuni

description: Additional file 6: Table S3. DEGs in the caecal tonsils between line N and line 61 control birds. Analysis compares the gene expression of all six control birds for each line. A fold change greater than 1 indicates genes more highly expressed in line N whereas a fold change less than 1 indicates genes more highly expressed in line 61. FC: fold change, FDR: False Discovery Rate.
DOI: 10.6084/m9.figshare.14728382
title: Additional file 3 of Transcriptomic analysis of caecal tissue in inbred chicken lines that exhibit heritable differences in resistance to Campylobacter jejuni

description: Additional file 3: Table S2. Significant GO Terms associated with DEGs in the caecal tonsils between infected and control line 61 birds at 1 dpi. DEGs were identified between 3 infected and 3 control birds. FDR: False Discovery Rate.
DOI: 10.6084/m9.figshare.14728379
title: Additional file 2 of Transcriptomic analysis of caecal tissue in inbred chicken lines that exhibit heritable differences in resistance to Campylobacter jejuni

description: Additional file 2: Table S1. DEGs in the caecal tonsils between control and infected line 61 birds at 1 dpi. A fold change greater than 1 indicates genes that were upregulated in infected compared to control birds whereas a fold change less than 1 indicates genes which were downregulated in infected compared to control birds. N = 3 for both groups. FC: fold change, FDR: False Discovery Rate.
DOI: 10.6084/m9.figshare.14728373
title: Additional file 11 of Transcriptomic analysis of caecal tissue in inbred chicken lines that exhibit heritable differences in resistance to Campylobacter jejuni

description: Additional file 11: Table S6. Primer sequences for qRT-PCR
DOI: 10.6084/m9.figshare.14728370
title: Additional file 10 of Transcriptomic analysis of caecal tissue in inbred chicken lines that exhibit heritable differences in resistance to Campylobacter jejuni

description: Additional file 10: Table S5. STAR Alignment statistics for RNA-Seq transcript reads. l6: line 61, ln: line N, i: infected, c: control, b: bird, dpi: days post-infection.
DOI: 10.6084/m9.figshare.14728292
title: Additional file 6 of Genomic and transcriptomic analysis of the thermophilic lignocellulose-degrading fungus Thielavia terrestris LPH172

description: Additional file 6: The complete list of all upregulated putative CAZyme encoding genes on the four tested substrates.
DOI: 10.6084/m9.figshare.14729001
title: FINEDUST

description: FINEDUST is an image dataset for assessing image dehazing algorithms on scenes degraded by fine dust/yellow dust. It consists of 30 real images collected from the Internet.
DOI: 10.6084/m9.figshare.14728289
title: Additional file 5 of Genomic and transcriptomic analysis of the thermophilic lignocellulose-degrading fungus Thielavia terrestris LPH172

description: Additional file 5: The complete list of all expressed genes on the four tested substrates.
DOI: 10.6084/m9.figshare.14728286
title: Additional file 4 of Genomic and transcriptomic analysis of the thermophilic lignocellulose-degrading fungus Thielavia terrestris LPH172

description: Additional file 4: Putative homologues of known transcription factors directly regulating (hemi)cellulose utilization in the genome of T. terrestris LPH172.
DOI: 10.6084/m9.figshare.14728285
title: Additional file 3 of Detection of SARS-CoV-2 RNA using RT-LAMP and molecular beacons

description: Additional file 3: Table S2. Clinical samples and results of assays for SARS-CoV-2 and human RNA.
DOI: 10.6084/m9.figshare.14728283
title: Additional file 3 of Genomic and transcriptomic analysis of the thermophilic lignocellulose-degrading fungus Thielavia terrestris LPH172

description: Additional file 3: The complete list of putative CAZy domains detected in T. terrestris LPH172 and other filamentous fungi.
DOI: 10.6084/m9.figshare.14728282
title: Additional file 2 of Detection of SARS-CoV-2 RNA using RT-LAMP and molecular beacons

description: Additional file 2: Table S1. Oligonucleotides used in the LAMP-BEAC assay.
DOI: 10.6084/m9.figshare.14724261.v2
title: The trained network

description: The trained network for wavelength classification. This network also be used for tsne analysis.