cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3622883_d6
title: Additional file 5: of Metagenome-assembled genomes uncover a global brackish microbiome

description: Counts of COGs, PFAMs, TIGRFAMs and enzymes in each MAG. (XLSX 2595 kb)
DOI: 10.6084/m9.figshare.c.3622895_d3
title: Additional file 1 : Table S4. of Pathogen-regulated genes in wheat isogenic lines differing in resistance to brown rust Puccinia triticina

description: Infection types of selected isogenic wheat lines inoculated with single spore isolate of Puccinia triticina (brown rust) used in this study. Infection type scale: 0 – no uredinia or other macroscopic signs of infection, 0; − no uredinia, but hypersensitive necrotic or chlorotic flecks of varying size present, 1 – small uredinia often surrounded by necrosis, 2 – small to medium-sized uredinia often surrounded by chlorosis or necrosis, 3 – medium-sized uredinia associated with chlorosis or rarely necrosis, 4 – large uredinia without chlorosis or necrosis. (DOCX 19 kb)
DOI: 10.17863/cam.106936
title: Research data supporting: "Electrostatic [FeFe]-hydrogenase–carbon nitride assemblies for efficient solar hydrogen production"

description: Manuscript folder - contains Fig.1-5: schematics, photocatalysis, QCM, PEIS, IMVS, and TPC (as PNG, XLSX files) Electronic Supplementary Information (ESI) folder - contains Fig.S1-S24: SEM, FTIR, PL, UV–vis, Zeta potential, NMR, HPLC, photograph, photocatalysis, PEIS (as EPS, PDF, TIF, PNG, XLSX files) Please see Readme file.
DOI: 10.6084/m9.figshare.c.3622910_d2
title: Additional file 2: of Vitamin D deficiency and supplementation in pregnancy in a multiethnic population-based cohort

description: Supplementary table. (XLSX 11Â kb)
DOI: 10.17863/cam.59394
title: Research data supporting "Unconventional bulk superconductivity in YFe2Ge2 single crystals"

description: Low temperature heat capacity, electrical transport and magnetisation data obtained on high quality crystals of YFe2Ge2, showing the dependence of crystalline quality on the growth method and demonstrating the influence of disorder level on the superconducting transition.
DOI: 10.17863/cam.8106
title: Research Data supporting "Tuning shape, composition and magnetization of three-dimensional cobalt nanowires grown by Focused Electron Beam Induced Deposition (FEBID)"

description: Metadata for "Tuning shape, composition and magnetization of three-dimensional cobalt nanowires grown by Focused Electron Beam Induced Deposition (FEBID)" The files include all data for the figures included in the manuscript. The magnitude measured and units are included on each column.
DOI: 10.17863/cam.37637
title: Matlab coordinates and edge lengths supporting "Flexible polyhedra", "Optimising the Steffen flexible polyhedron" and "Flexible polyhedra with two-mechanisms"

description: These data Matlab files. They are generated from running Matlab programmes. The file types are various Matlab file types for running different functions of Matlab coding. These data are generated by Iila Lijingjiao during her PhD studies at Cambridge University in 2013-2015. These data are for calculating and viewing various flexible polyhedra in her PhD research topic "Optimising flexible polyhedra". These files and data from Matlab coding are for maximising the range of movement in existing polyhedra that bend about theirselves, and for devising polyhedra with more than one degree of freedom. The two types of flexible polyhedra that are optimised are the Steffen flexible polyhedron and another flexible polyhedron devised by Tomohiro Tachi, who is the co-author of three papers these data are supporting. These data contain the edge lengths and the coordinates of vertices of both types of the flexible polyhedra described above. The edge lengths and the coordinates of vertices are of the original, changed and optimised polyhedra. The majority of the files are raw data. Processed data, which is the range of bending movement against the regularity of the shape of polyhedra, are also presented. Instructions regarding how to use the Matlab codes in order to use the data - coordinates of vertices - stored in the Matlab data files are given in sub files.
DOI: 10.6084/m9.figshare.c.3622955_d4
title: Additional file 4: Table S3. of Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies

description: List of the 2195 cultivars representing the Vassal collection used for computing diversity indices. (XLSX 102 kb)
DOI: 10.6084/m9.figshare.c.3622973_d1
title: Additional file 2: Table S1. of A novel phase variant of the cholera pathogen shows stress-adaptive cryptic transcriptomic signatures

description: Percentage of reads mapped to the reference genome for each RNA sample. (XLSX 10 kb)
DOI: 10.17863/cam.70738
title: Research data supporting "Functional interactions between sensory and memory networks for adaptive behaviour"

description: 1. Behavioral data: Participants took part in a tilt aftereffect paradigm to test for perceptual adaptation. Participants were tested on two conditions: (a) adaptation: repeated presentation of the same gratings; (b) non-adaptation: presentation of varying gratings. We computed a perceptual adaptation index as the difference between the estimated mean parameter of the fitting functions for the adaptation and non-adaptation conditions. This measure was used for statistical analysis. Further, participants were tested in a visual short-term memory task. Memory score from this task was used for statistical analysis. 2. MRS data: MRS data were collected from two voxels on a 3T scanner: EV and PMN. MRS data were analysed with the LC-Model to quantify metabolite concentrations: GABA+, Glutamate, Glutamine and NAA. GABA+ concentration referenced to NAA was used for statistical analysis. GABA+/water, Glu/NAA and MRS quality indices were used for control analyses. 3. fMRI data: fMRI data were collected during perceptual adaptation (i.e. adaptation and non-adaptation conditions). The main study was conducted at a 3T scanner (2mm isotropic resolution), wheareas the replication study at a 7T scanner (0.8mm isotropic resolution). Data were pre-processed following the Human Connectome Project pipeline for multi-band data: motion correction, EPI-to-EPI coregistration, EPI-to-T1 coregistration, MNI normalisation, spatial smoothing, ICA denoising. fMRI data were then analysed to test for (a) BOLD differences between conditions, and (b) functional connectivity differences between conditions. Lastly, we also tested correlations of the above measures with behaviour and GABA+. 4. Whole brain clusters: The zip folder contains the t-maps of the significant clusters from all analyses tested (see point 3 above). The t-maps are in MNI space, are provided in .nii format (i.e. Nifti) and are named based on the corresponding Supplementary Table (Tables S3-S14). For more information, please see the Karlaftis_CC21_data_description.doc file.
DOI: 10.17863/cam.32242
title: Data supporting "D2 receptors and cognitive flexibility in marmosets: Tri-phasic dose-response effects of intra-striatal quinpirole on serial reversal performance"

description: Data supporting "D2 receptors and cognitive flexibility in marmosets: Tri-phasic dose-response effects of intra-striatal quinpirole on serial reversal performance". See the file 'Horst et al - D2Rs and flexibility - Description of dataset.docx' for a detailed description of this dataset.
DOI: 10.6084/m9.figshare.c.3622973_d3
title: Additional file 3: Table S2. of A novel phase variant of the cholera pathogen shows stress-adaptive cryptic transcriptomic signatures

description: Total fragments mapped exclusively within each predicted gene per sample and normalized FPKM values. (XLSX 471 kb)
DOI: 10.6084/m9.figshare.c.3622955_d8
title: Additional file 2: Table S2. of Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies

description: List of the 62 accessions of Vitis vinifera subsp. silvestris composing the wild panel. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3622973_d4
title: Additional file 10: Table S6. of A novel phase variant of the cholera pathogen shows stress-adaptive cryptic transcriptomic signatures

description: Genes that were significantly up-regulated from N16961 to N16961R and remained up-regulated in N16961SD. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3622979_d1
title: Additional file 7: Table S6. of The pan-genome of Lactobacillus reuteri strains originating from the pig gastrointestinal tract

description: Amino acid identity between pseudo-SRRPs from L. reuteri ATCC 53608 and 100-23 and functional SRRP counterparts. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3622955_d11
title: Additional file 7: Table S5. of Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies

description: Effect of subgroup, genomic region, MAF, diversity, and SNP annotation features on LD (r 2 V) extent. The three subgroups of the association panel and the wild panel were included. Pairs of SNPs were classified as having: 0, 1 or 2 SNPs with MAF
DOI: 10.6084/m9.figshare.c.3622973_d5
title: Additional file 13: Table S9. of A novel phase variant of the cholera pathogen shows stress-adaptive cryptic transcriptomic signatures

description: Genes that were not significantly differentially regulated from N16961 to N16961R but were significantly down-regulated in N16961SD. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3622985_d1
title: Additional file 1: Table S1. of The Haemonchus contortus kinome - a resource for fundamental molecular investigations and drug discovery

description: The Haemonchus contortus kinome, orthologs in Caenorhabditis elegans and Ovis aries, amino acid sequence identities and similarities, functional annotations, and nucleotide and amino acid sequences. Table S2. Transcription profiles of 432 Haemonchus contortus protein kinase transcripts. Table S3. Chemicals in DrugBank associated with the 13 predicted Haemonchus contortus kinase drug targets. Table S4. Chemicals in KinaseÂ SARfari associated with the 13 predicted Haemonchus contortus kinase drug targets. (XLSX 1004 kb)
DOI: 10.17863/cam.108251
title: Data supporting 'Optimal experiment design with adjoint-accelerated Bayesian inference'

description: Experimental data collected from a hot wire Rijke tube. Contains experimental data to support the paper "Optimal experiment design with adjoint-accelerated Bayesian inference". The experiments are described briefly in this paper, and in more detail in the paper "Generating a physics-based quantitatively-accurate model of an electrically-heated Rijke tube with Bayesian inference" https://www.repository.cam.ac.uk/handle/1810/337715 More details of the data is provided in the readme.txt file.
DOI: 10.17863/cam.43845
title: Research data supporting "Symmetry in Multiple Self-Consistent-Field Solutions of Transition-Metal Complexes"

description: Raw Q-Chem outputs for metadynamics calculations Raw Q-Chem outputs for reconvergence calculations into individual states Raw Q-Chem outputs for NOCI calculations Raw pickled Python dictionaries (.sd files) containing symmetry-equivalent states generated by SymmetryTools in QCMagic Symmetry analysis results
DOI: 10.17863/cam.17136
title: Research data supporting "Simplifying understory complexity in oil palm plantations is associated with a reduction in the density of a cleptoparasitic spider, Argyrodes miniaceus (Araneae: Theridiidae), in host (Araneae: Nephilinae) webs"

description: Information on cleptoparasite spider density in host Nephila spider webs in oil palm plantation sites in Riau, Indonesia. Column headings include Plot (oil palm area plot number), Treatment (understory management treatment - E is enhanced, N is normal, and R is reduced), Date (date of survey), Time (time of survey), Weather (weather at time of survey), Spider Height (height of spider in web), Spider size (length of Nephila spider), Web L (total length of web), Web W (total width of web), # cleptos (number of Argyrodes spiders in web), # males (number of male Nephila spiders in web).
DOI: 10.17863/cam.42979
title: Research data supporting "Investigation of the effect of microstructural changes on thermal transport in semicrystalline polymer semiconductors"

description: This dataset contains Matlab figures corresponding to the figures in the article as well as instructions on how to extract specific data from these figures in Matlab environment. The data was obtained using Linseis Thin Film Analyser in August - November 2018 by Ekaterina Selezneva at the University of Cambridge within EPSRC CAM-IES project, Grant No. EP/P007767/1.
DOI: 10.17863/cam.34786
title: Research data supporting "Polaron spin dynamics in high-mobility polymeric semiconductors"

description: This publication contains the data underlying the paper: Schott, S. et al. Polaron spin dynamics in high-mobility polymeric semiconductors, Nature Physics (2019). Please note that the data does not stand on its own but is intended to be a supplement to the above paper. If you do not have a subscription of Nature Physics, please contact the first author or the corresponding author for a copy of the paper. Please see the text file "README.md" for an overview of the data and information on suitable programs to open the data files.
DOI: 10.17863/cam.17102
title: Data supporting NSPN publication "Morphometric Similarity Networks Detect Microscale Cortical Organisation and Predict Inter-Individual Cognitive Variation"

description: Contents: MSNs_Neuron.zip - file containing 296 individual morphometric similarity networks (MSNs). These are .txt files containing 308x308 region matrices. Each element represents the Pearson correlation of z-normalized feature (n=10) vectors. See Methods of the manuscript for more information.
DOI: 10.17863/cam.86411
title: Research data supporting "Dynamics of Magnetic Flux Propagation in Bulk, Single Grain Superconducting Rings during Pulsed Field Magnetisation"

description: A summary of the research data supporting "Dynamics of Magnetic Flux Propagation in Bulk, Single Grain Superconducting Rings during Pulsed Field Magnetisation" The corresponding files contain the supplementary data for the paper DOI: - Modelling_Data.xlsx - Experimental_Data.xlsx - Fig17_Bz_J-Q-T-export-15-17-19ms.txt - Fig17-J-Q-higherdensity-export-15-17-19ms.txt - Fig17-J-Q-export-17p5ms.txt Detailed information about each file can be found in the READ_ME.txt file.
DOI: 10.6084/m9.figshare.c.3623015_d1
title: Additional file 2: of Phylogenetic and amino acid conservation analyses of bacterial l-aspartate-Îą-decarboxylase and of its zymogen-maturation protein reveal a putative interaction domain

description: Dataset S2. PanM list.
DOI: 10.17863/cam.32043
title: Supporting Data for "The role of ionic liquid breakdown in the electrochemical metallization of VO2: An NMR study of gating mechanisms and VO2 reduction"

description: 1H, 2H, 17O and 51V solid-state NMR; magnetic susceptibility; and XRD data for pristine, catalytically hydrogenated, and electrochemically metallised bulk VO2. Plus 1H NMR of a VO2 thin film before and after electrochemical metallisation. The zip file contains data in the following formats: NMR: topspin file-structure with FID, processed spectrum and metadata Susceptibility: .dat file, plain text with headers and metadata XRD: .xy file where the first column is 2*theta /degrees and the second column is counts. For more details see manuscript.
DOI: 10.6084/m9.figshare.c.3623015_d2
title: Additional file 1: of Phylogenetic and amino acid conservation analyses of bacterial l-aspartate-Îą-decarboxylase and of its zymogen-maturation protein reveal a putative interaction domain

description: Dataset S1. PanD list.
DOI: 10.17863/cam.41622
title: Code and Data Readme for “Modeled subglacial water flow routing supports localized intrusive heating as a possible cause of basal melting of Mars’ south polar ice cap"

description: Computer code and derived data developed during the research reported in "Modeled subglacial water flow routing supports localized intrusive heating as a possible cause of basal melting of Mars’ south polar ice cap" published in Journal of Geophysical Research-Planets. See the file 'Code and Data Readme.rtf' for detailed information about the contents of this dataset.
DOI: 10.17863/cam.89385
title: Code associated with "Finite amplitude elastic waves in viscoelastic channel flow from large to zero Reynolds number"

description: Numerical code associated with the publication. Please see README doc for more details
DOI: 10.17863/cam.55685
title: Research data supporting "Structure and magnetism of a new hexagonal polymorph of Ba3Tb(BO3)3 with a quasi-2D triangular lattice"

description: The zipped data file contains: STRUCTURAL: X-ray diffraction intensities as a function of 2theta at variable temperature (12,50,100,150,200,250,300 K). Rietveld refinement results in a four column format: 2theta (deg), observed intensity, calculated intensity, and difference (obs minus calc). Location of Bragg reflections ('ticks') in a text file. List of Bragg reflections with their Miller indices (h,k,l) and intensities, as a .hkl file. Crystallographic Information File (.cif) with full structural and symmetry information for the reported phase. Atomic positions of heavy atoms as a function of temperature (.dat file) MAGNETIC: Magnetocaloric data (MCE) as a function of field and temperature (.dat file). Zero-field-cooled (ZFC) magnetic susceptibility data (.dat file) Isothermal magnetisation (MvH) at several temperatures (2,4,6,8,10,15,20,100K) as .dat files. See filedirectory.txt for information on data. All files can be opened in txt files; .cif files can also be opened in software designed for viewing crystal structures. Further information about data collection and analysis is given in the manuscript.
DOI: 10.17863/cam.23972
title: Raw data supporting article: Solar Water Splitting with a Hydrogenase Integrated in Photoelectrochemical Tandem Cells

description: Raw Data/Measurement results supporting article: Solar Water Splitting with a Hydrogenase Integrated in Photoelectrochemical Tandem Cells
DOI: 10.17863/cam.68372
title: UPIQ: Unified Photometric Image Quality dataset (04.2021)

description: Unified Photometric Image Quality dataset (UPIQ) UPIQ dataset is intended for training and evaluation of full-reference HDR image quality metrics. The dataset contains 84 reference images and 4159 distorted images from four datasets, TID2013 [1] (SDR), LIVE [2] (SDR), Narwaria et al. [3] (HDR) and Korshunov et al. [4] (HDR). Quality scores were obtained by re-aligning existing datasets to a common unified quality scale. This was achieved by collecting additional cross-dataset quality comparisons and re-scaling existing data with a psychometric scaling method. Images in the dataset are represented in absolute photometric and colorimetric units, corresponding to light emitted from a display. This is an updated version of the dataset with the fixed pix_per_deg column. See README.md. [1] Ponomarenko, N., Jin, L., Ieremeiev, O., Lukin, V., Egiazarian, K., Astola, J., Benoit: Image database tid2013: Peculiarities, results and perspectives. Signal Processing: Image Communication 30, 57 – 77 (2015) [2] Sheikh, H., Sabir, M., Bovik, A.: A Statistical Evaluation of Recent Full Reference Image Quality Assessment Algorithms. IEEE Transactions on Image Processing 15(11), 3440–3451 (2006). https://doi.org/10.1109/TIP.2006.881959, http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=1709988 [3] Narwaria, M., P. Da Silva, M., Le Callet, P., Pepion, R.: Tone mapping-based high-dynamic-range image compression: study of optimization criterion and perceptual quality. Optical Engineering 52(10) (2013). https://doi.org/10.1117/1.OE.52.10.102008 [4] Korshunov, P., Hanhart, P., Richter, T., Artusi, A., Mantiuk, R., Ebrahimi, T.: Subjective quality assessment database of HDR images compressed with jpeg xt. In: 2015 Seventh International Workshop on Quality of Multimedia Experience (QoMEX). pp. 1–6 (May 2015). https://doi.org/10.1109/QoMEX.2015.7148119
DOI: 10.17863/cam.86804
title: Research Data Supporting "Oxidation Behaviour of New Nickel-Base Superalloys with Varying Aluminium : Niobium Ratio"

description: These data relate to the figures within the associated manuscript. Data are provided for the four alloys studied, with varying Al:Nb ratio across the alloy series. These data include scanning electron microscopy images (.tiff files) obtained from the four alloys after two different thermal exposures, in addition to X-ray diffraction data (.txt files). Energy dispersive X-ray spectroscopy data is included as a .oip file, which can be opened using the proprietary Oxford Instruments AZtec software. The associated data necessary for AZtec to read this file is contained in the corresponding .dat files. The normalised mass gain data used to produce the discontinuous mass gain graphs are also provided in the form of a spreadsheet (.xlsx file).
DOI: 10.6084/m9.figshare.c.3623075_d2
title: Additional file 2: Table S1. of Genome-wide discovery and validation of Eucalyptus small RNAs reveals variable patterns of conservation and diversity across species of Myrtaceae

description: Annotation of Eucalyptus conserved miRNAs by similarity search against miRBase. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3623084_d1
title: Additional file 1 of Label noise in subtype discrimination of class C G protein-coupled receptors: A systematic approach to the analysis of classification errors

description: This is a csv format file containing the table of 52 frequently misclassified sequences that were common to all four data transformations, as described in the Results section of the main text. It includes the following columns: GPCRDB identifier, GPCRDB true class, and predicted class for, in turn, the AAC, Digram, ACC and PDBT transformations. A strong agreement on the most-often predicted class C GPCR subtypes can be observed. (XLS 22 Kb)
DOI: 10.6084/m9.figshare.c.3623075_d3
title: Additional file 4: Table S2. of Genome-wide discovery and validation of Eucalyptus small RNAs reveals variable patterns of conservation and diversity across species of Myrtaceae

description: Eucalyptus miRNA loci predicted by miRDeep2. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3623066_d3
title: Additional file 3: of A practical approach to detect ancestral haplotypes in livestock populations

description: Five most common ancestral haplotypes per breed in the Spanish breeds dataset. Information presented for each haplotype (Hap) pertain to chromosome (Chr), genomic coordinates of the haplotype (starting SNP and ending SNP base pair positions), frequency (as provided by AlphaPhase) and relative frequency to other haplotypes (frequency of the haplotype divided by the sum of the frequencies of all haplotypes detected in the cluster for the total population). Coordinates are given according to the Genome assembly UMD3.1. (XLSX 13Â kb)
DOI: 10.5281/zenodo.14443879
title: Environmental and host-driven dynamics of ciliate epibionts in freshwater zooplankton
DOI: 10.5281/zenodo.14443880
title: Environmental and host-driven dynamics of ciliate epibionts in freshwater zooplankton
DOI: 10.6084/m9.figshare.c.3623075_d6
title: Additional file 7: Table S4. of Genome-wide discovery and validation of Eucalyptus small RNAs reveals variable patterns of conservation and diversity across species of Myrtaceae

description: Targets from degradome sequencing for BRASUZ1 21 bp RNAs - leaves. (XLS 30 kb)