cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3909579
title: Dataset for "Structural diversity with varying disorder enables the multicolored display in the longhorn beetle Sulawesiella rafaelae"

description: <strong>Dataset for</strong> "Structural diversity with varying disorder enables the multicolored display in the longhorn beetle <em>Sulawesiella rafaelae</em>" The data is arranged into a .zip folder, containing the following files (.txt, .tif, jpg files). This data and the descriptions below should be read in conjunction with the manuscript and “Supporting Info”, both of which may be found on the <em>iScience</em> homepage. Doi: https://doi.org/10.1016/j.isci.2020.101339
description: This work was financially supported by the Swiss National Science Foundation (163220, 168223), through the National Center of Competence in Research Bio-inspired Materials, the Adolphe Merkle Foundation and the National Science Foundation (NSF DEB 1841704). This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 741855 and the ERC Advanced Grant agreement No. 833895.
DOI: 10.5281/zenodo.3909578
title: Dataset for "Structural diversity with varying disorder enables the multicolored display in the longhorn beetle Sulawesiella rafaelae"

description: <strong>Dataset for</strong> "Structural diversity with varying disorder enables the multicolored display in the longhorn beetle <em>Sulawesiella rafaelae</em>" The data is arranged into a .zip folder, containing the following files (.txt, .tif, jpg files). This data and the descriptions below should be read in conjunction with the manuscript and “Supporting Info”, both of which may be found on the <em>iScience</em> homepage. Doi: https://doi.org/10.1016/j.isci.2020.101339
description: This work was financially supported by the Swiss National Science Foundation (163220, 168223), through the National Center of Competence in Research Bio-inspired Materials, the Adolphe Merkle Foundation and the National Science Foundation (NSF DEB 1841704). This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 741855 and the ERC Advanced Grant agreement No. 833895.
DOI: 10.5281/zenodo.3939029
title: PNAS Freshwater Salinization Syndrome

description: This report was published online by the National Academy of Sciences - the DOI is https://doi.org/10.1073/pnas.1711234115. This spreadsheet lists the descriptions and trends (sen slopes) for each chemical parameter at each location that was used in that study. All raw data is publicly available and was downloaded from waterwatch.usgs.gov.
DOI: 10.5281/zenodo.3939028
title: PNAS Freshwater Salinization Syndrome

description: This report was published online by the National Academy of Sciences - the DOI is https://doi.org/10.1073/pnas.1711234115. This spreadsheet lists the descriptions and trends (sen slopes) for each chemical parameter at each location that was used in that study. All raw data is publicly available and was downloaded from waterwatch.usgs.gov.
DOI: 10.5281/zenodo.3938988
title: BES LTER Base Cation Data for Core Monitoring Streams across Land Use Gradient

description: The Baltimore Ecosystem Study LTER has established a network of long-term biogeochemical hydrologic study sites. Sites range from suburban to highly urban. More site information can be found on the BESLTER page at www.beslter.org Descriptions of land use and further site descriptions can be found in Kaushal et al 2017. Tabs represent a different sites, listing the base cation concentrations, as well as a tab summarizing site averages as used in Kaushal et al. 2017.
DOI: 10.5281/zenodo.3938987
title: BES LTER Base Cation Data for Core Monitoring Streams across Land Use Gradient

description: The Baltimore Ecosystem Study LTER has established a network of long-term biogeochemical hydrologic study sites. Sites range from suburban to highly urban. More site information can be found on the BESLTER page at www.beslter.org Descriptions of land use and further site descriptions can be found in Kaushal et al 2017. Tabs represent a different sites, listing the base cation concentrations, as well as a tab summarizing site averages as used in Kaushal et al. 2017.
DOI: 10.5281/zenodo.3939004
title: Anacostia Watershed Study: Base Cations, Inorganic Carbon, and Water Quality

description: Campus Creek and Paint Branch Creek are two urban streams in the Anacostia River watershed. Both sampling sites for these two streams are located on the campus of the University of Maryland, College Park. Please see Kaushal 2019 for further site descriptions. Data on following pages is for water quality that has been published in Kaushal et al. 2017, Haq et al. 2018, Kaushal et al. 2018, Kaushal et al. 2019.
DOI: 10.5281/zenodo.3939003
title: Anacostia Watershed Study: Base Cations, Inorganic Carbon, and Water Quality

description: Campus Creek and Paint Branch Creek are two urban streams in the Anacostia River watershed. Both sampling sites for these two streams are located on the campus of the University of Maryland, College Park. Please see Kaushal 2019 for further site descriptions. Data on following pages is for water quality that has been published in Kaushal et al. 2017, Haq et al. 2018, Kaushal et al. 2018, Kaushal et al. 2019.
DOI: 10.17037/data.00001806
title: Clinical Codelist - Product codes for pneumococcal vaccination.

description: Product codes for pneumococcal vaccination.
DOI: 10.17037/data.00001805
title: Clinical Codelist - Read codes for pneumococcal vaccination

description: Read codes for pneumococcal vaccination.
DOI: 10.5281/zenodo.3930911
title: Figures, plotting scripts, and data for "Resolving non-uniform temperature distributions with single-beam absorption spectroscopy. Part I: Theoretical capabilities and limitations"

description: This dataset contains the necessary materials to recreate the figures in "Resolving nonuniform temperature distributions with single-beam absorption spectroscopy: Part I: Theoretical capabilities and limitations." The code included in this dataset is released under the BSD 3-Clause License (see LICENSE.txt for details). The figures are shared under the Creative Commons Attribution 4.0 International License (CC BY 4.0, https://creativecommons.org/licenses/by/4.0/).
DOI: 10.5281/zenodo.3939033
title: Classify on the Clock (CloCk) - An Entry Level Image Data Set for Neural Networks

description: <strong>General information</strong> This data set contains synthetic images of an analog clock. Each time point from 00:00:00 - 11:59:59 is included as a separate image. We provide three different versions of each image with an increasing number of additional information: <em>Sparse</em>: The image includes just the hour, minute and second hand <em>Reduced</em>: Additional markings around the clock <em>Full</em>: Additional written numbers The hands differ in size and color: <em>Hour</em>: Black, short, wide <em>Minute</em>: Blue, long, medium <em>Second</em>: Red, long, slim We provide the following files in this data repository: RGB images with a size of 512x512 for all three versions A suggested training, validation and test split The creation script as Python file The script can easily be modified to create images with a different size and color. <strong>Clock System</strong> The movements of the hands follow a linear relationship. Their angles can be calculated by the forward system: \( \begin{bmatrix} 6^\circ & 0 & 0 \\ 0.1^\circ & 6^\circ & 0 \\ 0 & 0.5^\circ & 30^\circ \end{bmatrix} \begin{pmatrix} n_{\text{sec}} \\ n_{\text{min}} \\ n_{\text{hour}} \end{pmatrix} = \begin{pmatrix} \alpha_{\text{sec}}\\ \alpha_{\text{min}} \\ \alpha_{\text{hour}} \end{pmatrix}.\) One can also introduce rotated versions of the images. The system becomes non-linear in this case: \(\operatorname{mod}\left( \begin{bmatrix} 6^\circ & 0 & 0 \\ 0.1^\circ & 6^\circ & 0 \\ 0 & 0.5^\circ & 30^\circ \end{bmatrix} \begin{pmatrix} n_{\text{sec}} \\ n_{\text{min}} \\ n_{\text{hour}} \end{pmatrix} + \omega, \, 360^\circ \right) = \begin{pmatrix} \alpha_{\text{sec}}\\ \alpha_{\text{min}} \\ \alpha_{\text{hour}} \end{pmatrix}.\) <strong>Use Cases</strong> This data set was originally designed for basic research on Capsule Networks. Use cases are: Evalutation of classification and regression performance Influence of image transformations, e.g. rotations Detection of the hierarchy & relationship of image parts Concealment of objects in the image Interpretability of the learned model Solving a discrete inverse problem (<em>sparse</em> version) ...
DOI: 10.5281/zenodo.3939032
title: Classify on the Clock (CloCk) - An Entry Level Image Data Set for Neural Networks

description: <strong>General information</strong> This data set contains synthetic images of an analog clock. Each time point from 00:00:00 - 11:59:59 is included as a separate image. We provide three different versions of each image with an increasing number of additional information: <em>Sparse</em>: The image includes just the hour, minute and second hand <em>Reduced</em>: Additional markings around the clock <em>Full</em>: Additional written numbers The hands differ in size and color: <em>Hour</em>: Black, short, wide <em>Minute</em>: Blue, long, medium <em>Second</em>: Red, long, slim We provide the following files in this data repository: RGB images with a size of 512x512 for all three versions A suggested training, validation and test split The creation script as Python file The script can easily be modified to create images with a different size and color. <strong>Clock System</strong> The movements of the hands follow a linear relationship. Their angles can be calculated by the forward system: \( \begin{bmatrix} 6^\circ & 0 & 0 \\ 0.1^\circ & 6^\circ & 0 \\ 0 & 0.5^\circ & 30^\circ \end{bmatrix} \begin{pmatrix} n_{\text{sec}} \\ n_{\text{min}} \\ n_{\text{hour}} \end{pmatrix} = \begin{pmatrix} \alpha_{\text{sec}}\\ \alpha_{\text{min}} \\ \alpha_{\text{hour}} \end{pmatrix}.\) One can also introduce rotated versions of the images. The system becomes non-linear in this case: \(\operatorname{mod}\left( \begin{bmatrix} 6^\circ & 0 & 0 \\ 0.1^\circ & 6^\circ & 0 \\ 0 & 0.5^\circ & 30^\circ \end{bmatrix} \begin{pmatrix} n_{\text{sec}} \\ n_{\text{min}} \\ n_{\text{hour}} \end{pmatrix} + \omega, \, 360^\circ \right) = \begin{pmatrix} \alpha_{\text{sec}}\\ \alpha_{\text{min}} \\ \alpha_{\text{hour}} \end{pmatrix}.\) <strong>Use Cases</strong> This data set was originally designed for basic research on Capsule Networks. Use cases are: Evalutation of classification and regression performance Influence of image transformations, e.g. rotations Detection of the hierarchy & relationship of image parts Concealment of objects in the image Interpretability of the learned model Solving a discrete inverse problem (<em>sparse</em> version) ...
DOI: 10.25387/g3.12493769
title: Supplemental Material for Sae-Lee et al., 2020

description: <b>Figure S1.</b> Representative images of degenerating HSN neurons. <b>A-C,</b> Degenerated HSN neurons had dim (arrow heads) or barely visible (dotted circle) cell bodies. <b>D-G,</b> Earlier evidence of HSN neuron degeneration was visible as blebbing of the cell body (arrows). <b>H-I</b>, Processes of degenerating HSN neurons also showed beading (H, arrows) that was not visible in healthy HSN neurons (I). Autofluorescence from intestine bright in panels H and I due to higher gain to visualize HSN axon. VC4 and VC5 neurons fluorescing out of focus in panels B-F. <b>Figure S2.</b> APP::mCherry is expressed throughout the nervous system.<b> A</b> DIC and fluorescent photomicrographs at 40X along the length of the worm. A C-terminal mCherry tag shows APP expression. As expected, we found that APP expressed under a pan-neuronal promoter was seen throughout the entire nervous system including the nerve ring and along the ventral nerve cord in the absence (left) and presence (right) of exAPOE4. <b>B </b>Enlarged photomicrographs of the ventral nerve cord taken mid-body show that APP is expressed in a punctate pattern in the VCs both when APOE4 expression is absent (top) and present (bottom). <b>C</b> Enlarged photomicrographs show that APP is expressed in a punctate pattern in the HSNs. <b>Figure S3.</b> <i>APOE3 </i>and<i> APOE4</i> transgene levels. <b><i>A,</i></b> Semi-quantitative analysis of level of <i>APOE</i> transgene arrays in genomic DNA. Average band intensities of three independent genomic preparations from five worms/strain following PCR for human APOE presented as mean ± SEM. No significant differences were found when comparing levels for APOE3 vs APOE4 strains after correcting for multiple comparisons. <b><i>B,</i></b> Expression of <i>APOE </i>determined by RT-qPCR of mRNA isolated from 3 (integrated) or 9 (extrachromosomal) near-starved 6-cm plates of worms. DCt values reveal little difference in gene expression between strains. Values represent the mean ± SE of two independent biological replicates with three technical replicates each. Data is represented as gene expression relative to the reference control gene <i>tba-1</i>. <b>Table S1</b>. List of strains used throughout our study arranged by Figure.<br>
DOI: 10.25387/g3.12493769.v2
title: Supplemental Material for Sae-Lee et al., 2020

description: <b>Figure S1.</b> Representative images of degenerating HSN neurons. <b>A-C,</b> Degenerated HSN neurons had dim (arrow heads) or barely visible (dotted circle) cell bodies. <b>D-G,</b> Earlier evidence of HSN neuron degeneration was visible as blebbing of the cell body (arrows). <b>H-I</b>, Processes of degenerating HSN neurons also showed beading (H, arrows) that was not visible in healthy HSN neurons (I). Autofluorescence from intestine bright in panels H and I due to higher gain to visualize HSN axon. VC4 and VC5 neurons fluorescing out of focus in panels B-F. <b>Figure S2.</b> APP::mCherry is expressed throughout the nervous system.<b> A</b> DIC and fluorescent photomicrographs at 40X along the length of the worm. A C-terminal mCherry tag shows APP expression. As expected, we found that APP expressed under a pan-neuronal promoter was seen throughout the entire nervous system including the nerve ring and along the ventral nerve cord in the absence (left) and presence (right) of exAPOE4. <b>B </b>Enlarged photomicrographs of the ventral nerve cord taken mid-body show that APP is expressed in a punctate pattern in the VCs both when APOE4 expression is absent (top) and present (bottom). <b>C</b> Enlarged photomicrographs show that APP is expressed in a punctate pattern in the HSNs. <b>Figure S3.</b> <i>APOE3 </i>and<i> APOE4</i> transgene levels. <b><i>A,</i></b> Semi-quantitative analysis of level of <i>APOE</i> transgene arrays in genomic DNA. Average band intensities of three independent genomic preparations from five worms/strain following PCR for human APOE presented as mean ± SEM. No significant differences were found when comparing levels for APOE3 vs APOE4 strains after correcting for multiple comparisons. <b><i>B,</i></b> Expression of <i>APOE </i>determined by RT-qPCR of mRNA isolated from 3 (integrated) or 9 (extrachromosomal) near-starved 6-cm plates of worms. DCt values reveal little difference in gene expression between strains. Values represent the mean ± SE of two independent biological replicates with three technical replicates each. Data is represented as gene expression relative to the reference control gene <i>tba-1</i>. <b>Table S1</b>. List of strains used throughout our study arranged by Figure.<br>
DOI: 10.5281/zenodo.3935507
title: IAWAS - Development of Alternating Current Plasma Transfer Arc (ACPTA) for Additive Manufacturing

description: In the framework of the CleanSky project IAWAS, these data have been gather for the Work Package 3 on process development. These files provide the experimental data gathered during the preliminary development of ACPTA for aluminium lithium wire + arc additive manufacturing. The results anlysis is provided in the deliverable 3.4. The excel files are the experimental data sheet The AMV compressed folders gather the arc voltage and current raw measurements The AMV data are analysed and the results are provided by the excel file Characterisation of the ACPTA arcs for different process targets
DOI: 10.5281/zenodo.3935506
title: IAWAS - Development of Alternating Current Plasma Transfer Arc (ACPTA) for Additive Manufacturing

description: In the framework of the CleanSky project IAWAS, these data have been gather for the Work Package 3 on process development. These files provide the experimental data gathered during the preliminary development of ACPTA for aluminium lithium wire + arc additive manufacturing. The results anlysis is provided in the deliverable 3.4. The excel files are the experimental data sheet The AMV compressed folders gather the arc voltage and current raw measurements The AMV data are analysed and the results are provided by the excel file Characterisation of the ACPTA arcs for different process targets
DOI: 10.5281/zenodo.3939098
title: data_WEFnexus_andalusia

description: Water-Energy-Food dataset for Andalusia (2010-2050)
DOI: 10.5281/zenodo.3939097
title: data_WEFnexus_andalusia

description: Water-Energy-Food dataset for Andalusia (2010-2050)
DOI: 10.17632/f8mpz7yxnh.3
title: Data for: The Effectiveness of Cupping Therapy on Chronic Fatigue Syndrome： A Single Blind Randomized Controlled Trial

description: include all of scales Score and random table
DOI: 10.17638/datacat.liverpool.ac.uk/987
title: Crystal structure and stoichiometric composition of potassium-intercalated tetracene
DOI: 10.17037/data.00001807
title: Clinical codelist - Immunisation codes for pneumococcal vaccination

description: Immunisation codes for pneumococcal vaccination
DOI: 10.18434/m32259
title: LacI protein genotype-phenotype landscape data

description: This data table contains the processed data for the LacI genotype-phenotype landscape, a quantitative measurement of the phenotype for approximately 60,000 variants of the E. coli LacI protein. The table includes, for example, the DNA barcode sequencing counts and the estimated fitness for each variant across 24 different chemical environments. It also includes the estimated dose-response curves for each variant under induction with IPTG.
DOI: 10.5281/zenodo.3877287
title: Annotation and analysis of the secondary structure elements in the Cytochrome P450 protein family

description: We collected all currently available structures for proteins in the Cytochrome P450 family and annotated their secondary structure elements using SecStrAnnotator software (https://webchem.ncbr.muni.cz/Wiki/SecStrAnnotator). We used 2nnjA as the template domain for the annotation. Based on these annotations, we analysed the occurrence, length distribution, amino acid sequence, and presence of structural irregularities (β-bulges, 3<sub>10</sub>-helices, π-helices) of each secondary structure element class. We also statistically compared the bacterial vs eukaryotic structures. For the secondary structure element classes with sufficient sequence conservation, the most conserved residue is annotated as the reference residue. Main files: <strong>set_ALL.json</strong> - Set-ALL: list of 1012 protein domains belonging to the Cytochrome P450 family (CATH accession 1.10.630.10 + Pfam accession PF00067, accessed on 7 July 2020, one domain per PDB entry) <strong>set_NR.json</strong> - Set-NR: non-redundant list of 183 domains (one domain per UniProt ID) <strong>domain_lists_table.tsv</strong> - Overview of Set-ALL and Set-NR and separation into subsets Set-NR-Bact (bacterial), Set-NR-Euka (eukaryotic), Set-NR-Arch (archaeal), Set-NR-Viru (viral) <strong>structures/template_2NNJ-template.sses.json</strong> - Manually prepared annotation template (domain 2nnjA) <strong>structures/template_2NNJ.cif</strong> - Structure of the template domain (2nnjA) <strong>annotations_with_reference_residues_ALL.json, annotations_with_reference_residues_ALL.tsv</strong> - Annotation of secondary structure elements for Set-ALL <strong>annotations_with_reference_residues_NR.json, annotations_with_reference_residues_NR.tsv</strong> - Annotation of secondary structure elements for Set-NR <strong>aligments_NR</strong> - Multiple sequence alignments for each SSE class (Set-NR) <strong>logos_NR</strong> - Sequence logos for each SSE class (Set-NR) <strong>plots</strong> - Plots of SSE occurrence, length distribution, contained helix types and beta-bulge occurrence (Set-NR), some plots show the comparison between Set-NR-Bact and Set-NR-Euka <strong>statistical_tests.ods</strong> - Comparison of SSE occurrence between Set-NR-Bact and Set-NR-Euka by the test of equal proportions and the Fisher test, comparision of the SSE length by the Kolmogorov-Smirnov test and the two-sample Wilcoxon test
description: {"references": ["Midlik A, Navr\u00e1tilov\u00e1 V, Moturu TR, Ko\u010da J, Svobodov\u00e1 R, Berka K. Uncovering of Cytochrome P450 Anatomy by SecStrAnnotator. bioRxiv 2020.04.15.042531. doi: 10.1101/2020.04.15.042531"]}
DOI: 10.5281/zenodo.3939163
title: OER Librarian Position Descriptions Corpus

description: This a preservation copy of the corpus of library position descriptions that accompany my article in IJOER: https://www.ijoer.org/open-education-librarianship-a-position-description-analysis-of-the-newly-emerging-role-in-academic-libraries/
DOI: 10.5281/zenodo.3939162
title: OER Librarian Position Descriptions Corpus

description: This a preservation copy of the corpus of library position descriptions that accompany my article in IJOER: https://www.ijoer.org/open-education-librarianship-a-position-description-analysis-of-the-newly-emerging-role-in-academic-libraries/
DOI: 10.17632/f8mpz7yxnh.4
title: Data for: The Effectiveness of Cupping Therapy on Chronic Fatigue Syndrome： A Single Blind Randomized Controlled Trial

description: include all of scales Score and random table
DOI: 10.7910/dvn/560wk8/mi04x8
title: FSPP_Dry_Zone_Traders_2017_Codebook.txt

description: Code book
DOI: 10.7910/dvn/560wk8/wsgare
title: FSPP_Dry_Zone_Traders_2017_Consent_Form.pdf

description: Cosent
DOI: 10.7910/dvn/560wk8/zy0djs
title: FSPP_Dry_Zone_Traders_2017_Questionnaire.pdf

description: Survey Instrument
DOI: 10.7910/dvn/560wk8/emcoxu
title: FSPP_Dry_Zone_Traders_2017_sec_e_agent_roster.tab

description: Data file:CSV format
DOI: 10.7910/dvn/560wk8/aq0nmh
title: FSPP_Dry_Zone_Traders_2017_sec_b_interviewee.tab

description: Data file:CSV format
DOI: 10.5281/zenodo.3939201
title: The surface characteristics of alternative CB biochar and Caragana korshinskii.

description: The surface characteristics of alternative CB biochar and<em> Caragana korshinskii</em>.
DOI: 10.18112/openneuro.ds003007.v1.0.0
title: Two sessions of resting state with closed eyes for patients with depression in treatment course (NFB, CBT or No treatment groups)
DOI: 10.5281/zenodo.3939214
title: The Eco-friendly biochar and valuable bio-oil from Caragana korshinskii: pyrolysis preparation, characterization and adsorption applications

description: The surface characteristics of alternative CB biochar and<em> Caragana korshinskii</em>.