cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/h2g-slq-hwt
title: Hibolithes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jz8-6rt-ylf
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5y4-4wg-j6a
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lm1-2g2-zw3
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/drt-e0z-8kl
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pfd-bww-b4b
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qwm-3j3-h5g
title: Duvalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/elb-sgv-3t6
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tla-v3y-v7p
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/95n-3ns-c3g
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xq4-7gy-ap0
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jgm-je3-5zs
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kl8-t1c-q9v
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mqd-npv-q67
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dq0-6td-wh6
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lzz-hd8-bnd
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xb5-82f-n78
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b2j-wyb-bgb
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ta3-8jc-zy3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2gc-gnv-bhx
title: †Belemnitida

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hhk-62s-19c
title: Belemnites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3np-56d-zr2
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8rd-2xj-09c
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xpl-260-sx4
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mb8-a38-m96
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rqw-2gv-9qp
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vgm-h3e-xr7
title: Atlantoxerus Forsyth Major, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/32e-dxk-kzr
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hjz-1bf-1ke
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0xg-qxr-y2p
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zaj-2mb-c0t
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.16679095
title: New atomic models for C, Si, S for use in solar UV radiative transfer calculations

description: Atomic models for C, Si and S in Lightweaver radiative transfer code format. Can be imported directly into Lightweaver. They are the same models used primarily to create the continuum synthetic spectrum in 'Improving the atomic modelling for solar UV radiative transfer calculations' submitted to MNRAS (2025). All data is level resolved and is described in the article. Photo-ionisation is not included for short-lived states, which may affect some line intensities. The only data missing compared to the models used in the article are the suppression factors for dielectronic recombination, which will not affect the continuum intensities, but is likely to alter line intensities from singly-charged and higher species. Suppression factors can be calculated from the Summers 1974 effective recombination rates given on the OPEN ADAS website, open.adas.ac.uk.
DOI: 10.15468/dl.mxhrux
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centrosema molle",
 "Country is Timor-Leste",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085631-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2xcmcb
title: Occurrence Download

description: A dataset containing 3724 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Buteo hemilasius"
 ]
}

 The dataset includes 3724 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085630-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5duxzp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centrosema molle",
 "Country is Tonga",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085632-250717081556266/datasets/export for details.
DOI: 10.15784/601931
title: CESM1.2 Ocean Model Output for Eocene Including Neodymium and Oxygen Isotopes

description: Included are 100 years of monthly mean ocean model output from CESM1.2 integrations for the Eocene carried out by Adam Aleksinski and Matthew Huber, with critical assistance from Alexandra Jahn, and with assistance and support from Jiang Zhu (NCAR). These simulations were carried out at NCAR. These simulations incorporate results using the standard Eocene Deepmip 1 boundary conditions (Lunt et al, 2017), including the boundary condition datasets (Herold et al., 2014), and were branched off originally from simulations carried out at NCAR by Jiang Zhu (Zhu et al., 2020). The three simulations included here incorporate neodymium in them for the first time and span a range of CO2 and gateway configurations that make it appropriate for the Middle Eocene to late Eocene. 
<br>
<br>The continuation (“SF_SU_55Ma_init-hycont”) experiment run continued from the end of Zhu et al. (2020)’s 3x preindustrial pCO2 (854.1 ppm) experiment, which used DeepMIP compliant geography and bathymetry for simulating the early Eocene. This simulation was run for a total of 4,800 years. Two runs each branched from this SF_SU_55Ma_init-hycont after 1,200 years of runtime, and each ran for 3,600 years after that point. In the Open Drake Passage experimental run (SF_SU_55Ma_open-hycont), the atmospheric pCO2 concentration from the continuation simulation was retained, and the bathymetry of the Drake Passage and Tasman Seaway were both lowered to a depth of 1973 mbsl. In the Halved pCO2 experiment SF_SU_55Ma_cool), the Herold et al original bathymetry was retained, but atmospheric pCO2 was reduced by a factor of half, to 427.05 ppm.
<br>
<br> The model output is global in extent and is netcdf format, which has been tarred and gzipped, and follows standard conventions for ocean GCMs. The data are on an irregular 'POP' grid. All the necessary information to read and process these data are included in the netcdf metadata.
DOI: 10.15468/dl.yj9cc3
title: Occurrence Download

description: A dataset containing 130054 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Flora of Vladimir Oblast, Russia: an updated grid dataset (1867–2020)"
 ]
}

 The dataset includes 130054 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002411-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15295265
title: Transcriptomic profiling of cytomegalovirus infection in cardiac transplantation: proof-of-concept for a new strategy in tissue markers application

description: Cytomegalovirus (CMV) infection is a relevant threat to heart transplanted patients during the first year after surgery, leading to increased morbidity and, in some cases, mortality. This proof-of-concept study aims to assess the transcriptomic profile of CMV infection in cardiac transplanted patients as a new diagnostic approach to discriminate infection and Acute Cellular Rejection (ACR) on EMB specimens. We performed a microarray-based messenger RNA (mRNA) and micro-RNA (miRNA) profiling using high-density Clariom S Affymetrix GeneChip arrays (Thermofisher Scientific, USA) and miRNA 4.0 chips and FlashTagTM Biotin HSR RNA Labeling Kit (Thermofisher Scientific, USA). We analyzed three patient groups in the setting of CMV viremia and inflammatory infiltrate: a control group (n=5), an ACR group (n=5), and an infection group (n=6).
DOI: 10.5281/zenodo.15295266
title: Transcriptomic profiling of cytomegalovirus infection in cardiac transplantation: proof-of-concept for a new strategy in tissue markers application

description: Cytomegalovirus (CMV) infection is a relevant threat to heart transplanted patients during the first year after surgery, leading to increased morbidity and, in some cases, mortality. This proof-of-concept study aims to assess the transcriptomic profile of CMV infection in cardiac transplanted patients as a new diagnostic approach to discriminate infection and Acute Cellular Rejection (ACR) on EMB specimens. We performed a microarray-based messenger RNA (mRNA) and micro-RNA (miRNA) profiling using high-density Clariom S Affymetrix GeneChip arrays (Thermofisher Scientific, USA) and miRNA 4.0 chips and FlashTagTM Biotin HSR RNA Labeling Kit (Thermofisher Scientific, USA). We analyzed three patient groups in the setting of CMV viremia and inflammatory infiltrate: a control group (n=5), an ACR group (n=5), and an infection group (n=6).
DOI: 10.15468/dl.umbp77
title: Occurrence Download

description: A dataset containing 130847 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is World distribution of the aquatic Oligochaeta"
 ]
}

 The dataset includes 130847 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002412-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14795285
title: Confinement-supported aurophilic interaction dataset

description: This dataset contains processed structural data files for supramolecular cages (1892128, H, B1, B2, B3, B4, and B10) and gold complexes (G, G2, and 1–4), along with their calculated volumes and cavity sizes.

Cage structure preparation

All supramolecular cage structures were prepared in the following way:



Original CIF files were obtained from the Cambridge Structural Database (CSD);

Atoms and molecular fragments not part of the cage framework were removed, using Diamond Crystal and Molecular Structure Visualization software;

 Processed structures were saved in PDB format.


Furthermore, the H cage was aligned to cage 1892128 for consistency in comparisons.

Cavity Size Calculation

The dataset includes a script (run.sh) to compute cavity sizes for all investigated supramolecular cages using pyKVFinder v0.7.2. The parameters used for these calculations and estimated volume are provided in the table below:




Cage
Step Size (Å)
Probe Out (Å)
Removal Distance (Å)
Volume Cutoff (Å³)
Cavity Volume (Å³)


1892128
0.25
10.0
1.0
5.0
558


H
0.25
10.0
1.0
5.0
563


B1
0.25
10.0
2.0
5.0
283


B2
0.25
10.0
1.75
5.0
284


B3
0.25
10.0
1.5
20.0
269


B4
0.25
10.0
1.5
5.0
438


B10
0.25
10.0
1.5
5.0
251
DOI: 10.5281/zenodo.14795286
title: Confinement-supported aurophilic interaction dataset

description: This dataset contains processed structural data files for supramolecular cages (1892128, H, B1, B2, B3, B4, and B10) and gold complexes (G, G2, and 1–4), along with their calculated volumes and cavity sizes.

Cage structure preparation

All supramolecular cage structures were prepared in the following way:



Original CIF files were obtained from the Cambridge Structural Database (CSD);

Atoms and molecular fragments not part of the cage framework were removed, using Diamond Crystal and Molecular Structure Visualization software;

 Processed structures were saved in PDB format.


Furthermore, the H cage was aligned to cage 1892128 for consistency in comparisons.

Cavity Size Calculation

The dataset includes a script (run.sh) to compute cavity sizes for all investigated supramolecular cages using pyKVFinder v0.7.2. The parameters used for these calculations and estimated volume are provided in the table below:




Cage
Step Size (Å)
Probe Out (Å)
Removal Distance (Å)
Volume Cutoff (Å³)
Cavity Volume (Å³)


1892128
0.25
10.0
1.0
5.0
558


H
0.25
10.0
1.0
5.0
563


B1
0.25
10.0
2.0
5.0
283


B2
0.25
10.0
1.75
5.0
284


B3
0.25
10.0
1.5
20.0
269


B4
0.25
10.0
1.5
5.0
438


B10
0.25
10.0
1.5
5.0
251
DOI: 10.15468/dl.awfumf
title: Occurrence Download

description: A dataset containing 19119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate reprojected, The taxon concept ID was not used in backbone matching, The taxon ID was not used in backbone matching, Coordinate rounded, Continent derived from coordinates, Country derived from coordinates)",
 "OccurrenceStatus is Present",
 "TaxonKey is Sarcoramphus papa (Linnaeus, 1758)",
 "Year 1970-2015"
 ]
}

 The dataset includes 19119 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000324-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26131/irsa298
title: SAGE-SMC IRAC Epoch 0, Epoch 1, and Epoch 2 Catalog

description: The SAGE-SMC project is a Cycle 4 legacy program on the Spitzer Space Telescope, entitled, SAGE-SMC: Surveying the Agents of Galaxy Evolution in the Tidally-Disrupted, Low-Metallicity Small Magellanic Cloud, with Karl Gordon (STScI) as the PI. The project overview and initial results are described in a paper by Gordon et al. (2010, in prep). The SMC was mapped at two different epochs dubbed Epochs 1 and 2 separated by 3 (IRAC) and 9 (MIPS) months, as this provides a 90-degree roll angle in the orientation of the detectors, which optimally removes the striping artifacts in MIPS and artifacts along columns and rows in the IRAC image data. In addition, these two epochs are useful constraints of source variability expected for evolved stars and some young stellar ob jects (YSOs). The IRAC and MIPS observations from the S3MC pathfinder survey of the inner 3 sq. deg. of the SMC (PI: Bolatto, referred to as Epoch 0) have been reduced using the same software. 

In comparison to the catalog, the archive has more source fluxes (fewer nulled wavelengths) and some more sources but these additions have more uncertainty associated with them. For the catalog, a source must be detected in at least 60% of the observations at that wavelength, at least 32% of the observations in an adjacent band (the confirming band), and the S/N must be greater than [5, 5, 5, 7] for IRAC bands [3.6um], [4.5um], [5.8um] and [8.0um]. The 2MASS K_s band is counted as a detection. For a typical source, extracted from 2x12 sec frametime images, the minimum detection criterion amounts to being detected twice in one band (usually band 1 or 2) and once in an adjacent band (sometimes referred to as the 2+1 criterion). For the catalog, sources with neighbors within a 2" radius are excluded (culled). For the archive, sources within a 0.5" are excluded. For more details, see Section 3.3 of the SAGE-SMC Data Delivery Document.

This dataset or service is made available by the Infrared Science Archive (IRSA) at IPAC, which is operated by the California Institute of Technology under contract with the National Aeronautics and Space Administration.
DOI: 10.15468/dl.5zpwaz
title: Occurrence Download

description: A dataset containing 246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cygnus atratus",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 246 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029608-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q6pbr9
title: Occurrence Download

description: A dataset containing 35856 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (c54097e6-0972-4acb-b849-eaeba29c917d, 28eb1a3f-1c15-4a95-931a-4af90ecb574d, d5ef14a1-5177-4547-9ce2-46d84a4214eb, 2a7e3080-28a9-11dd-97cd-b8a03c50a862)",
 "TaxonKey is Dasypus novemcinctus"
 ]
}

 The dataset includes 35856 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029606-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ctfqyn
title: Occurrence Download

description: A dataset containing 185064 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Sweden",
 "DatasetKey is Artportalen",
 "Geometry POLYGON((14.51485 57.90698,14.51236 57.92257,14.50481 57.9377,14.49243 57.9519,14.47559 57.96474,14.4548 57.97582,14.43069 57.98482,14.404 57.99145,14.37554 57.99551,14.34617 57.99687,14.31681 57.99551,14.28835 57.99145,14.26165 57.98482,14.23754 57.97582,14.21675 57.96474,14.19992 57.9519,14.18754 57.9377,14.17999 57.92257,14.1775 57.90698,14.18013 57.89139,14.18781 57.87628,14.20028 57.86211,14.21717 57.84931,14.23796 57.83826,14.26202 57.8293,14.28862 57.8227,14.31696 57.81866,14.34617 57.8173,14.37539 57.81866,14.40373 57.8227,14.43033 57.8293,14.45439 57.83826,14.47518 57.84931,14.49207 57.86211,14.50454 57.87628,14.51221 57.89139,14.51485 57.90698))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 1990-2025"
 ]
}

 The dataset includes 185064 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029591-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26131/irsa299
title: SAGE-SMC MIPS 24 micron Epoch 1 Catalog

description: The SAGE-SMC project is a Cycle 4 legacy program on the Spitzer Space Telescope, entitled, SAGE-SMC: Surveying the Agents of Galaxy Evolution in the Tidally-Disrupted, Low-Metallicity Small Magellanic Cloud, with Karl Gordon (STScI) as the PI. The project overview and initial results are described in a paper by Gordon et al. (2010, in prep). The SMC was mapped at two different epochs dubbed Epochs 1 and 2 separated by 3 (IRAC) and 9 (MIPS) months, as this provides a 90-degree roll angle in the orientation of the detectors, which optimally removes the striping artifacts in MIPS and artifacts along columns and rows in the IRAC image data. In addition, these two epochs are useful constraints of source variability expected for evolved stars and some young stellar ob jects (YSOs). The IRAC and MIPS observations from the S3MC pathfinder survey of the inner 3 sq. deg. of the SMC (PI: Bolatto, referred to as Epoch 0) have been reduced using the same software. 

To be included in each single epoch catalog, each 24 um source has to meet a number of criteria. The source had to be nearly point like with a correlation value &gt;0.89. This removed approximately 2/3 of the entries in the single epoch source lists. In regions where there is a significant structure in the surrounding region (identified as having a sigma &gt; 0.25 in a 120" width square box), the source had to have a correlation value &gt;0.91. This requirement removed a small number of sources (70). Finally, all sources had to have signal-to-noise (S/N) values &gt;5. The S/N used was that estimated from the StarFinder code using the mosaic uncertainty image added in quadrature with an 0.6% error due to the background subtraction. This removed 700 sources. The final Epoch 1 catalog likely has a few remaining unreliable sources, estimated to be at less than the 1% level. The Full List contains ALL sources extracted from the MIPS 24 um mosaics, thus a user should be aware that it contains spurious sources. For more details, see Section 4.1 of the SAGE-SMC Data Delivery Document.

This dataset or service is made available by the Infrared Science Archive (IRSA) at IPAC, which is operated by the California Institute of Technology under contract with the National Aeronautics and Space Administration.
DOI: 10.34740/kaggle/dsv/12830789
title: Brain Atlas - FCA7N2011