cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14507709
title: Raw data "Fast and accurate quantification of double-strand breaks in microsatellites by digital PCR".

description: Figure 1: Southern blot original .tif images and quantification of the DSB in the xlsx files (see also Table 1). Figure 1BC-SB annotated.pptx represents the annotated Southern blots.

 

Figure 2: Original image of the Ethidium bromide gel of the DSB-PCR. Image annotated with the main band around 500 bp and with indications of the TALEN ON (+DSB) or OFF (-DSB).

 

Figure 3A: Original qPCR file (.pcrd) for the standard range. Ct results and calculations for the elaboration of the standard range are presented in the .xlsx files.

 

Figure 3BC: Original qPCR files (.pcrd) for the SYBR Green concentration tests. Melting curves and Ct results for each SYBR Green concentration are presented in the .xlsx files.

 

Figure 4CDE: Original dPCR files (.ncx and .ncr - can be opened using CrystalMiner software) for the quantification of the 31% DSB in the CTG repeats (quantified by Southern blot) and the 7% DSB (also quantified by Southern blot).

 

Table 2: Sample 1 (31% DSB) and Sample 2 (7% DSB). xlsx files extracted from the dPCR .ncx file and represent the results obtained for DSB quantification (31% and 7% DSB). The extracted data provide results for the Blue_Channel_Concentration (cp/µL) and Green_Channel_Concentration (cp/µL), which allow us to calculate the percentage of DSB. Only the yellow lines in the xlsx files are used to quantify the DSB (representing 1 ng of DNA used in the dPCR reaction).

 

Supplementary Data Figure 1A: Original qPCR file (.pcrd) for primer efficacy (CP19/upCTG fwd and JEM1 300bp primers used in this study). The xlsx file represents the quantification and calculations of primer efficacy.

 

Supplementary Data Figure 1B: Original dPCR files (.ncx and .ncr - can be opened using CrystalMiner software) for the quantification of the number of positive droplets depending on DNA dilution to assess primer efficacy (CP19/upCTG fwd). The xlsx file represents the quantification and calculation of primer efficacy.
DOI: 10.5281/zenodo.14507710
title: Raw data "Fast and accurate quantification of double-strand breaks in microsatellites by digital PCR".

description: Figure 1: Southern blot original .tif images and quantification of the DSB in the xlsx files (see also Table 1). Figure 1BC-SB annotated.pptx represents the annotated Southern blots.

 

Figure 2: Original image of the Ethidium bromide gel of the DSB-PCR. Image annotated with the main band around 500 bp and with indications of the TALEN ON (+DSB) or OFF (-DSB).

 

Figure 3A: Original qPCR file (.pcrd) for the standard range. Ct results and calculations for the elaboration of the standard range are presented in the .xlsx files.

 

Figure 3BC: Original qPCR files (.pcrd) for the SYBR Green concentration tests. Melting curves and Ct results for each SYBR Green concentration are presented in the .xlsx files.

 

Figure 4CDE: Original dPCR files (.ncx and .ncr - can be opened using CrystalMiner software) for the quantification of the 31% DSB in the CTG repeats (quantified by Southern blot) and the 7% DSB (also quantified by Southern blot).

 

Table 2: Sample 1 (31% DSB) and Sample 2 (7% DSB). xlsx files extracted from the dPCR .ncx file and represent the results obtained for DSB quantification (31% and 7% DSB). The extracted data provide results for the Blue_Channel_Concentration (cp/µL) and Green_Channel_Concentration (cp/µL), which allow us to calculate the percentage of DSB. Only the yellow lines in the xlsx files are used to quantify the DSB (representing 1 ng of DNA used in the dPCR reaction).

 

Supplementary Data Figure 1A: Original qPCR file (.pcrd) for primer efficacy (CP19/upCTG fwd and JEM1 300bp primers used in this study). The xlsx file represents the quantification and calculations of primer efficacy.

 

Supplementary Data Figure 1B: Original dPCR files (.ncx and .ncr - can be opened using CrystalMiner software) for the quantification of the number of positive droplets depending on DNA dilution to assess primer efficacy (CP19/upCTG fwd). The xlsx file represents the quantification and calculation of primer efficacy.
DOI: 10.3535/7hl-xvt-ce2
title: Teschenites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/06z-lhy-evq
title: Borelis schlumbergeri (Reichel, 1937)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ag8-645-qyb
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c2m-40q-7f1
title: Cibicides robustus Phleger & Parker, 1951

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q1s-3cy-759
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/61v-cx7-bne
title: Hibolithes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9dg-zws-ma3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6pv-lbd-qlb
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7m5-3kl-302
title: Pseudobelus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ryc-x4l-07m
title: Massilina crenata (Karrer, 1868)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g34-12w-jpz
title: Laevidentalina subsoluta (Cushman, 1923)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hx0-8e7-y51
title: Lagena elongata (Ehrenberg, 1844)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.d3mvvq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orobanche minor Sm.",
 "Country is Pakistan"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007671-250525065834625/datasets/export for details.
DOI: 10.15468/dl.qzg6fs
title: Occurrence Download

description: A dataset containing 445 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Ixchelia mexicana (Ging. ex DC.) H.E.Ballard & Wahlert"
 ]
}

 The dataset includes 445 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007672-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc5d08t
title: CCDC 160495: Experimental Crystal Structure Determination

description: Related Article: J.Pauls, B.Neumuller|2001|Z.Anorg.Allg.Chem.|627|2127|doi:10.1002/1521-3749(200109)627:9<2127::AID-ZAAC2127>3.0.CO;2-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5lzmb
title: CCDC 167202: Experimental Crystal Structure Determination

description: Related Article: Miao Du, Xian-He Bu, Qiang Xu, Zhi-Liang Shang, Ruo-Hua Zhang|2000|J.Chem.Cryst.|30|531|doi:10.1023/A:1011337722544
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5lznc
title: CCDC 167203: Experimental Crystal Structure Determination

description: Related Article: M.J.Plater, M.R.St.J.Foreman, J.M.S.Skakle|2000|J.Chem.Cryst.|30|535|doi:10.1023/A:1011389706614
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5lzqf
title: CCDC 167205: Experimental Crystal Structure Determination

description: Related Article: J.Katakawa, T.Tetsumi, T.Terai, M.Katai, K.Sakaguchi, M.Sato|2000|J.Chem.Cryst.|30|573|doi:10.1023/A:1011302209340
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5lzrg
title: CCDC 167206: Experimental Crystal Structure Determination

description: Related Article: Wansheng You, Zaiming Zhu, Enbo Wang, Lin Xu, Changwen Hu|2000|J.Chem.Cryst.|30|577|doi:10.1023/A:1011354226178
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5lzsh
title: CCDC 167207: Experimental Crystal Structure Determination

description: Related Article: D.A.Osborne, W.R.Dreher Junior, H.R.Gore Junior, A.Stoddard, E.J.Valente|2000|J.Chem.Cryst.|30|583|doi:10.1023/A:1011306310249
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5lztj
title: CCDC 167208: Experimental Crystal Structure Determination

description: Related Article: D.A.Osborne, W.R.Dreher Junior, H.R.Gore Junior, A.Stoddard, E.J.Valente|2000|J.Chem.Cryst.|30|583|doi:10.1023/A:1011306310249
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5lzvk
title: CCDC 167209: Experimental Crystal Structure Determination

description: Related Article: B.Bovio, S.Locchi|2000|J.Chem.Cryst.|30|589|doi:10.1023/A:1011358327087
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc55tfk
title: CCDC 154548: Experimental Crystal Structure Determination

description: Related Article: Yu-Jun Shi, Yan Xu, Yong Zhang, Bin Huang, Dun-Ru Zhu, Chuan-Ming Jin, Hao-Guo Zhu, Zhi Yu, Xue-Tai Chen, Xiao-Zeng You|2001|Chem.Lett.|30|678|doi:10.1246/cl.2001.678
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5lzwl
title: CCDC 167210: Experimental Crystal Structure Determination

description: Related Article: R.Kakou-Yao, H.Pizzala, N.Pietri, J.-P.Aycard|2000|J.Chem.Cryst.|30|593|doi:10.1023/A:1011310411157
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc57b1r
title: CCDC 155993: Experimental Crystal Structure Determination

description: Related Article: R.M.Gauvin, C.Lorber, R.Choukroun, B.Donnadieu, J.Kress|2001|Eur.J.Inorg.Chem.|2001|2337|doi:10.1002/1099-0682(200109)2001:9<2337::AID-EJIC2337>3.0.CO;2-B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.7qxswp
title: Occurrence Download

description: A dataset containing 256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Mexico",
 "Geometry POLYGON((-117.64539 32.42578,-114.65578 28.25353,-112.51616 28.35675,-115.24198 32.5494,-117.64539 32.42578))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Urosaurus nigricauda",
 "Year 2010-2025"
 ]
}

 The dataset includes 256 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011103-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnd9ut
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Cistothorus apolinari apolinari)"
 ]
}

 The dataset includes 176 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129487-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tgbd79
title: Occurrence Download

description: A dataset containing 882 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hypositta corallirostris (A.Newton, 1863))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 882 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299419-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d9d7u3
title: Occurrence Download

description: A dataset listing the 39473 species recorded in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((79.5188 23.84676,91.60704 23.84676,91.60704 33.51736,79.5188 33.51736,79.5188 23.84676))"
 ]
}

 The dataset's 39473 records were derived from 794 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005903-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3knjcj
title: Occurrence Download

description: A dataset containing 494 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carpodacus rhodochlamys (von J.F.Brandt, 1843))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 494 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299479-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6rf242
title: Occurrence Download

description: A dataset containing 1658538301 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 1658538301 records from 33628 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0203514-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g4ae66
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Varecia rubra)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 63 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083622-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ag5d2u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Varecia rubra)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083619-250717081556266/datasets/export for details.
DOI: 10.15468/dl.jb7zjh
title: Occurrence Download

description: A dataset containing 1770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Physalis peruviana",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1770 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083620-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110591063
title: Persepolis Fortification Aramaic Text 244, PFAT 244

description: [Text Description:] Administrative text with seal PFATS 0052 ❧ [Text or Publication Number Note:] PFAT 244, Bowman 244 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impression PFATS 0052 on obverse, reverse, flat edge. ❧ [Physical Object Note:] Damage on round edge
DOI: 10.25549/inscriptifact-ouc110588148
title: Persepolis Fortification Aramaic Text 196, PFAT 196

description: [Text Description:] Administrative text with seal PFS 1312s ❧ [Text or Publication Number Note:] PFAT 196, Bowman 196 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink inscription. Seal impressions PFS 1312s obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110589489
title: Persepolis Fortification Anepigraphic Tablet 0697.101, PFAnep 0697.101

description: [Text Description:] Administrative Text with seals PFS 0189, PFUTS 0105 ❧ [Text or Publication Number Note:] PFAnep 0697.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression PFS 0189 on obverse, PFUTS 0105 on left edge
DOI: 10.25549/inscriptifact-ouc110591030
title: Persepolis Fortification Aramaic Text 243, PFAT 243

description: [Text Description:] Administrative text with seals PFATS 0031s; PFATS 0260s ❧ [Text or Publication Number Note:] PFAT 243, Bowman 243 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Aramaic ❧ [Physical Object Description:] Clay tablet with ink and incised inscription. Seal impressions PFATS 0031s on reverse; PFATS 0260s on flat edge.