cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.662msy
title: Occurrence Download

description: A dataset containing 1028 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xenodermichthys copei (Gill, 1884)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 1028 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054991-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2dp4gq
title: CCDC 2224853: Experimental Crystal Structure Determination

description: Related Article: Shen Ge, Yi-Ming Zhu, Xiao-Ping Xu, You Zi, Shun-Jun Ji|2024|Chem.Commun.|60|14613|doi:10.1039/D4CC04084H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.w2aneq
title: Occurrence Download

description: A dataset containing 5523 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sabatia campestris Nutt.",
 "Geometry POLYGON((-109 26, -87 26, -87 44, -109 44, -109 26))"
 ]
}

 The dataset includes 5523 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054992-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eptcwx
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xenomystax bidentatus (Reid, 1940)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 65 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054993-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ad2gz2
title: Occurrence Download

description: A dataset containing 4436 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvia azurea Michx. ex Vahl",
 "Geometry POLYGON((-109 26, -87 26, -87 44, -109 44, -109 26))"
 ]
}

 The dataset includes 4436 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054995-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27614109
title: High-Dimensional Block Diagonal Covariance Structure Detection Using Singular Vectors

description: The assumption of independent subvectors arises in many aspects of multivariate analysis. In most real-world applications, however, we lack prior knowledge about the number of subvectors and the specific variables within each subvector. Yet, testing all these combinations is not feasible. For example, for a data matrix containing 15 variables, there are already 1,382,958,545 possible combinations. Given that zero correlation is a necessary condition for independence, independent subvectors exhibit a block diagonal covariance matrix. This article focuses on the detection of such block diagonal covariance structures in high-dimensional data and therefore also identifies uncorrelated subvectors. Our approach exploits the fact that the structure of the covariance matrix is mirrored by the structure of its eigenvectors. However, the true block diagonal structure is masked by noise in the sample case. To address this problem, we propose to use sparse approximations of the sample eigenvectors to reveal the sparse structure of the population eigenvectors. Notably, the right singular vectors of a data matrix with an overall mean of zero are identical to the sample eigenvectors of its covariance matrix. Using sparse approximations of these singular vectors instead of the eigenvectors makes the estimation of the covariance matrix obsolete. We demonstrate the performance of our method through simulations and provide real data examples. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.27614109.v1
title: High-Dimensional Block Diagonal Covariance Structure Detection Using Singular Vectors

description: The assumption of independent subvectors arises in many aspects of multivariate analysis. In most real-world applications, however, we lack prior knowledge about the number of subvectors and the specific variables within each subvector. Yet, testing all these combinations is not feasible. For example, for a data matrix containing 15 variables, there are already 1 382 958 545 possible combinations. Given that zero correlation is a necessary condition for independence, independent subvectors exhibit a block diagonal covariance matrix. This paper focuses on the detection of such block diagonal covariance structures in high-dimensional data and therefore also identifies uncorrelated subvectors. Our approach exploits the fact that the structure of the covariance matrix is mirrored by the structure of its eigenvectors. However, the true block diagonal structure is masked by noise in the sample case. To address this problem, we propose to use sparse approximations of the sample eigenvectors to reveal the sparse structure of the population eigenvectors. Notably, the right singular vectors of a data matrix with an overall mean of zero are identical to the sample eigenvectors of its covariance matrix. Using sparse approximations of these singular vectors instead of the eigenvectors makes the estimation of the covariance matrix obsolete. We demonstrate the performance of our method through simulations and provide real data examples. Supplementary materials for this article are available online.
DOI: 10.15468/dl.t6nj84
title: Occurrence Download

description: A dataset containing 9458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schizachyrium scoparium (Michx.) Nash",
 "Geometry POLYGON((-109 26, -87 26, -87 44, -109 44, -109 26))"
 ]
}

 The dataset includes 9458 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054996-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.twwy72
title: Occurrence Download

description: A dataset containing 1099 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Congo",
 "Geometry POLYGON((14.07175 1.34445,15.48333 1.34445,15.48333 2.34259,14.07175 2.34259,14.07175 1.34445))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 1099 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054997-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ksqfy6
title: Occurrence Download

description: A dataset containing 170935 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xiphias gladius Linnaeus, 1758",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 170935 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054994-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pbg2t3
title: Occurrence Download

description: A dataset containing 1134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xyrichtys martinicensis Valenciennes, 1840",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 1134 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054998-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.54gn67
title: Occurrence Download

description: A dataset containing 1880 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scutellaria parvula Michx.",
 "Geometry POLYGON((-109 26, -87 26, -87 44, -109 44, -109 26))"
 ]
}

 The dataset includes 1880 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054999-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14589485
title: sicyocaulis_pentagonus_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.14589486
title: sicyocaulis_pentagonus_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.14291078
title: Source Data for Western Blots in Main Figures 1-7 and Supplemental Figures 1, 3-5

description: These files include annotated raw western blot images.
DOI: 10.5281/zenodo.14291079
title: Source Data for Western Blots in Main Figures 1-7 and Supplemental Figures 1, 3-5

description: These files include annotated raw western blot images.
DOI: 10.15468/dl.5j7hf3
title: Occurrence Download

description: A dataset containing 2169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xyrichtys novacula (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 2169 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055000-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6r5762
title: Occurrence Download

description: A dataset containing 7893 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sideroxylon lanuginosum Michx.",
 "Geometry POLYGON((-109 26, -87 26, -87 44, -109 44, -109 26))"
 ]
}

 The dataset includes 7893 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055001-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r8gs8w
title: Occurrence Download

description: A dataset containing 4772 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xyrichtys splendens Castelnau, 1855",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 4772 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055003-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88j2u4
title: Occurrence Download

description: A dataset containing 34020 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amblyomma americanum Linnaeus, 1758"
 ]
}

 The dataset includes 34020 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055004-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14589166
title: cancerSimCraft_paper_data

description: cancerSimCraft project: 

This dataset contains validation, benchmarking, and simulation data accompanying the preprint: cancerSimCraft: A Multi-resolution Cancer Genome Simulator with Comprehensive Ground Truth Tracking.

These files support reproduction of manuscript figures and enable verification of simulator performance. The simulator source code is available at https://github.com/haijingjin/cancerSimCraft

Cite: 

If using this data, please cite our preprint at  https://www.biorxiv.org/content/10.1101/2024.12.11.627708v1

Jin H, Navin N, Chen K. cancerSimCraft: A Multi-resolution Cancer Genome Simulator with Comprehensive Ground Truth Tracking [preprint]. bioRxiv 2024.12.11.627708

Acknowledgment:

H.J. is a TRIUMPH Fellow in the CPRIT Training Program (RP210028).
DOI: 10.5281/zenodo.14589167
title: cancerSimCraft_paper_data

description: cancerSimCraft project: 

This dataset contains validation, benchmarking, and simulation data accompanying the preprint: cancerSimCraft: A Multi-resolution Cancer Genome Simulator with Comprehensive Ground Truth Tracking.

These files support reproduction of manuscript figures and enable verification of simulator performance. The simulator source code is available at https://github.com/haijingjin/cancerSimCraft

Cite: 

If using this data, please cite our preprint at  https://www.biorxiv.org/content/10.1101/2024.12.11.627708v1

Jin H, Navin N, Chen K. cancerSimCraft: A Multi-resolution Cancer Genome Simulator with Comprehensive Ground Truth Tracking [preprint]. bioRxiv 2024.12.11.627708

Acknowledgment:

H.J. is a TRIUMPH Fellow in the CPRIT Training Program (RP210028).
DOI: 10.15468/dl.zpz69h
title: Occurrence Download

description: A dataset containing 365 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xystreurys liolepis Jordan & Gilbert, 1880",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 365 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055005-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rufp4m
title: Occurrence Download

description: A dataset containing 9223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum carolinense L.",
 "Geometry POLYGON((-109 26, -87 26, -87 44, -109 44, -109 26))"
 ]
}

 The dataset includes 9223 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055006-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14589495
title: rostraria_azorica_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.14589496
title: rostraria_azorica_decontaminated_FSCR.fasta.gz
DOI: 10.15468/dl.t97hjj
title: Occurrence Download

description: A dataset containing 288 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zalembius rosaceus (Jordan & Gilbert, 1880)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 288 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055007-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cw4ahk
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Congo",
 "Geometry POLYGON((14.07175 1.34445,15.48333 1.34445,15.48333 2.34259,14.07175 2.34259,14.07175 1.34445))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 69 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055008-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nmajz2
title: Occurrence Download

description: A dataset containing 305 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zalieutes mcgintyi (Fowler, 1952)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 305 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055009-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14589502
title: sibynophis_subpunctatus_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.14589503
title: sibynophis_subpunctatus_decontaminated_FSCR.fasta.gz
DOI: 10.5517/ccdc.csd.cc2ff816
title: CCDC 2247067: Experimental Crystal Structure Determination

description: Related Article: Wen-Jing Jiang, Yin-Shan Meng, Han-Han Lu, Hai-Lang Zhu, Qiang Liu, Chunying Duan, Hiroki Oshio, Tao Liu|2025|Inorg.Chem.Front.|12|131|doi:10.1039/D4QI02428A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.vwhw2v
title: Occurrence Download

description: A dataset containing 220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zameus squamulosus (Günther, 1877)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 220 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055012-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2ff85b
title: CCDC 2247071: Experimental Crystal Structure Determination

description: Related Article: Wen-Jing Jiang, Yin-Shan Meng, Han-Han Lu, Hai-Lang Zhu, Qiang Liu, Chunying Duan, Hiroki Oshio, Tao Liu|2025|Inorg.Chem.Front.|12|131|doi:10.1039/D4QI02428A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ff89g
title: CCDC 2247075: Experimental Crystal Structure Determination

description: Related Article: Wen-Jing Jiang, Yin-Shan Meng, Han-Han Lu, Hai-Lang Zhu, Qiang Liu, Chunying Duan, Hiroki Oshio, Tao Liu|2025|Inorg.Chem.Front.|12|131|doi:10.1039/D4QI02428A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gzvbn
title: CCDC 2293762: Experimental Crystal Structure Determination

description: Related Article: Bin Huang, Jing Pang, Nan Cao, Ya-Shuang Dai, Ya-Qiu Long|2024|JACS Au|4|4206|doi:10.1021/jacsau.4c00942
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1mfdm2
title: CCDC 1502434: Experimental Crystal Structure Determination

description: Related Article: Danim Lim, Jintaek Gong, Jae-hoon Eom, Eunyoung Yoon, Christina A. Herrera, Isabella R. Garcia, Russell W. Driver*, Hee-Seung Lee*|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21hv1g
title: CCDC 1892055: Experimental Crystal Structure Determination

description: Related Article: Vijay Kumar Maka|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.gnh82v
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solidago ludoviciana (A.Gray) Small",
 "Geometry POLYGON((-109 26, -87 26, -87 44, -109 44, -109 26))"
 ]
}

 The dataset includes 59 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055013-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc21j0p9
title: CCDC 1892230: Experimental Crystal Structure Determination

description: Related Article: Vijay Kumar Maka|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.eqy2yc
title: Occurrence Download

description: A dataset containing 414 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((4.90452 53.67805,17.91312 53.67805,17.91312 58.87927,4.90452 58.87927,4.90452 53.67805))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lagenorhynchus Gray, 1846"
 ]
}

 The dataset includes 414 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055014-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc21jc10
title: CCDC 1892551: Experimental Crystal Structure Determination

description: Related Article: Vijay Kumar Maka, Jarugu Narasimha Moorthy|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.