cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.853801_d1
title: PSI_GLDAS.zip

description: The Global Integrated Drought Monitoring and Prediction System (GIDMaPS) provides near real-time drought information based on multiple drought indicators and input data sets (http://drought.eng.uci.edu/). In this package, the folder names indicate the drought index and the source of data (INDEX_SOURCE). Index options are: 1-PSI: Multivariate Standardized Drought Index (MSDI) based on Precipitation (P) and Soil Moisture (S). 2-SSI: Standardized Soil Moisture Index 3-SPI: Standardized Precipitation Index. In each folder the files are named as INDEXYYYYMM.asc, where YYYY= year; MM= month, and INDEX = PSI, SSI, SPI.
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GIDMaPS is presented in [Hao et al, 2014]. The deatails of MSDI, SSI and SPI are discussed in [Hao and AghaKouchak 2013a, 2013b]. GIDMaPS data has been used in [Damberg and AghaKouchak, 2013].
 
<strong>References</strong>
[1] Hao Z., AghaKouchak A., Nakhjiri N., Farahmand A., 2014, Global Integrated Drought Monitoring and Prediction System, Scientific Data, 1: 140001, doi: 10.1038/sdata.2014.1.
<br>
[2]  Hao Z., AghaKouchak A., 2013a, A Nonparametric Multivariate Multi-Index Drought Monitoring Framework,Journal of Hydrometeorology, doi:10.1175/JHM-D-12-0160.1.
<br>
[3]  Hao Z., AghaKouchak A., 2013b, Multivariate Standardized Drought Index: A Parametric Multi-Index Model,Advances in Water Resources, 57, 12-18, doi: 10.1016/j.advwatres.2013.03.009.
<br>
[4]  Damberg L., AghaKouchak A., 2013, Global Trends and Patterns of Droughts from Space, Theoretical and Applied Climatology, doi: 10.1007/s00704-013-1019-5. 
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DOI: 10.6084/m9.figshare.21717308.v1
title: Dental Myths Responses.xlsx

description: A dataset about dental misconceptions in Riyadh, Saudi Arabia.
DOI: 10.6084/m9.figshare.28760897.v3
title: Raw data for: Corrosion-resistant omniphobic coating for low-carbon steel substrates using silica layers enhanced with ethylenediamine tetraacedic acidRaw data for: Corrosion-resistant omniphobic coating for low-carbon steel substrates using silica layers enhanced with ethylenediamine tetraacedic acid

description: Raw data for Figures 5 - 8
DOI: 10.17632/v7342nzsm3
title: Supplemental Materials to the Manuscript "Atmospheric and Ionospheric Responses to Orographic Gravity Waves prior to the December 2022 Cold Air Outbreak"

description: This collection hosts the animations associated with the journal article, Atmospheric and Ionospheric Responses to Orographic Gravity Waves prior to the December 2022 Cold Air Outbreak. The full-text manuscript is published in Journal of Geophysical Research: Space Physics.

Authors:
P.A. Inchin
Computational Physics, Inc., Springfield, Virginia, USA
Center for Space and Atmospheric Research, Embry-Riddle Aeronautical University, Daytona Beach, FL, USA
A. Bhatt
SRI International, Menlo Park, CA, USA
M. Bramberger
NorthWest Research Associates, Boulder Office, Boulder, CO, USA
S. Chakraborty
Center for Space Science and Engineering Research, Virginia Tech, Blacksburg, VA, USA
S. Debchoudhury
Center for Space and Atmospheric Research, Embry-Riddle Aeronautical University, Daytona Beach, FL, USA
C. Heale
Center for Space and Atmospheric Research, Embry-Riddle Aeronautical University, Daytona Beach, FL, USA

The collection includes next datasets:
Dataset 1
Title: Green and red line airglow difference images
Description: The animation of difference images of green line (557.7 nm) and red line (630.0 nm).

Dataset 2
Title: Maps of filtered GNSS vTEC
Description: The animations of reconstructed maps of filtered vertical total electron content (vTEC) observations.

Dataset 3
Title: Climatological context
Description: The animations of absolute, mean and anomaly (absolute-mean) values of geopotential heights and vertical velocities based on ERA5 data products.
DOI: 10.6084/m9.figshare.28466720.v1
title: <i>Uolunt me suspendere:</i> the first three executions by hanging in eleventh- and twelfth-century Iberia

description: This article analyses the first personal executions by hanging during the eleventh and twelfth centuries of which we have evidence in the northwest of the Iberian Peninsula (Galicia and León). Information from wills, witness statements, purchase, and sale litigations will be used to examine three case studies, contextualised at a microhistorical level within their local, social, and legal context. The need for, and interest of, this research lies in the paucity of earlier studies on capital punishment for this period, as well as in the current boom in historiography on judicial history and conflict in the Middle Ages. The study of this social and personal context adds a new dimension to the study of punishments and penalties which have hitherto been analysed primarily from a legal point of view, rather than from the perspective of social history.
DOI: 10.6084/m9.figshare.8051945.v1
title: Force field parameters for coelenterazine

description: Force field parameters developed for coelenterazine as described in the manuscript "Atomistic insights into photoprotein formation: Computational prediction of the properties of coelenterazine and oxygen binding in Obelin" by Thomas M. Griffiths, Aaron Oakley, Haibo Yu
DOI: 10.17632/57wgkwkxvm
title: dataset for A Novel Semi-supervised Learning Model Based On Pelvic Radiographs For Ankylosing Spondylitis Diagnosis Reduces 90% Of Annotation Cost

description: Dataset for A Novel Semi-supervised Learning Model Based On Pelvic Radiographs For Ankylosing Spondylitis Diagnosis Reduces 90% Of Annotation Cost
DOI: 10.6084/m9.figshare.28691627.v1
title: data.zip

description: This study investigates the impact of China’s construction of high-standard farmland (CHSF) initiatives on grain productivity, focusing on total factor productivity growth of grain (TFPG) from 2000 to 2021. Using a continuous Difference-in-Differences (DID) approach based on balanced panel data from 31 Chinese provinces, this paper identifies significant productivity improvements, with TFPG increasing by an average of 7% post-implementation of CHSF. However, the effects are not uniform across regions—productivity gains are more pronounced in non-major grain-producing and plain areas, emphasizing the role of region-specific infrastructure and adaptive strategies. These findings provide empirical evidence on how large-scale farmland improvement enhances productivity through mechanization and better land use. However, the reliance on provincial-level data may overlook localized variations in CHSF implementation, suggesting the need for further micro-level analysis. Overall, this study highlights the importance of tailored agricultural policies to enhance their effectiveness and promote agricultural sustainability in China and other developing economies.
DOI: 10.6084/m9.figshare.5936896.v1
title: RV reducer

description: The data set is based on the acceleration signal, consisting of four different performance RV reducers, each representing a performance.
DOI: 10.6084/m9.figshare.12000615.v1
title: Age-related pharmacodynamics in a bumblebee-microsporidian system mirror similar patterns in vertebrates.

description: Database relating to Folly et al. 2020 Age-related pharmacodynamics in a bumblebee-microsporidian system mirror similar patterns in vertebrates. Contained are the parasite counts and groups for model generation.
DOI: 10.6084/m9.figshare.5123272.v1
title: Supplementary Material for: Alternative Methods for H1 Simulations in Genome-Wide Association Studies

description: <i>Objective:</i> Assessing the statistical power to detect susceptibility variants plays a critical role in genome-wide association (GWA) studies both from the prospective and retrospective point of view. Power is empirically estimated by simulating phenotypes under a disease model H1. For this purpose, the gold standard consists in simulating genotypes given the phenotypes (e.g.Hapgen). We introduce here an alternative approach for simulating phenotypes under H1 that does not require generating new genotypes for each simulation. <i>Methods:</i> In order to simulate phenotypes with a fixed total number of cases and under a given disease model, we suggest 3 algorithms: (1) a simple rejection algorithm; (2) a numerical Markov chain Monte-Carlo (MCMC) approach, and (3) an exact and efficient backward sampling algorithm. In our study, we validated the 3 algorithms both on a simulated dataset and by comparing them with Hapgen on a more realistic dataset. For an application, we then conducted a simulation study on a 1000 Genomes Project dataset consisting of 629 individuals (314 cases) and 8,048 SNPs from chromosome X. We arbitrarily defined an additive disease model with two susceptibility SNPs and an epistatic effect. <i>Results:</i> The 3 algorithms are consistent, but backward sampling is dramatically faster than the other two. Our approach also gives consistent results with Hapgen. Using our application data, we showed that our limited design requires a biological a priori to limit the investigated region. We also proved that epistatic effects can play a significant role even when simple marker statistics (e.g. trend) are used. We finally showed that the overall performance of a GWA study strongly depends on the prevalence of the disease: the larger the prevalence, the better the power. <i>Conclusions:</i> Our approach is a valid alternative to Hapgen-type methods; it is not only dramatically faster but has 2 main advantages: (1) there is no need for sophisticated genotype models (e.g. haplotype frequencies, or recombination rates), and (2) the choice of the disease model is completely unconstrained (number of SNPs involved, gene-environment interactions, hybrid genetic models, etc.). Our 3 algorithms are available in an R package called ‘waffect’ (‘double-u affect’, for weighted affectations).
DOI: 10.6084/m9.figshare.22665787.v1
title: Above Ground Storage Tank Inventory Dataset

description: The nationwide above-ground storage tank inventory dataset provides geospatial storage tank data and characteristics across the contiguous United States. The table is accessible in JSON, GeoJSON, and ESRI shapefile formats for accessibility across applications and software. This dataset is accompanied by a description of the variables in the tank_inventory_metadata.csv file.
DOI: 10.6084/m9.figshare.3555405.v1
title: Appendix B. A list of publications for the meta-analysis.

description: A list of publications for the meta-analysis.
DOI: 10.17605/osf.io/jc94x
title: Gender-based violence (GBV) among 2SLGBTQIA+ adolescents and youth: A scoping review

description: This study used the PRISMA litarature review approach to search, screen and synthesize the literature on GBV among 2SLGBTQIA+ adolescents and youth. 99 journal articles from 2009 to 2024 have been included in the final dataset. The scoping review was conducted using international databases (Web of Science, Scopus, Proquest, PubMed, Embase, EBSCOhost) since 2009. The studies were independently appraised by two reviewers guided by the PRISMA approach. Ninety-nine articles focusing on the 2SLGBTQIA+ community, GBV, and adolescents or youth were included for the review. The factors affecting the risk of GBV among 2SLGBTQIA+ adolescents and youth were categorized into 1) Well-being and mental health; 2) Disparities compared to cisgender youth; 3) Perpetration and victimization; 4) Different types of violence; and 5) Differences among 2SLGBTQIA+ subgroups. The findings revealed the necessity for multi-level strategies that account for the compounded risks faced by 2SLGBTQIA+ adolescents and youth, including those introduced by environmental crises. These five factors related to GBV among 2SLGBTQIA+ adolescents and youth should be considered by social work professionals when working with at-risk populations.
DOI: 10.6084/m9.figshare.12848709.v2
title: Cryptoclidid plesiosaurs (Sauropterygia, Plesiosauria) from the Upper Jurassic of the Atacama Desert

description: This study presents the first plesiosaurs recovered from the Jurassic of the Atacama Desert that are informative at the genus level. One specimen is represented by an articulated axial section that shows distinctive features, such as cervical vertebrae with oval articular facets and gracile neural pedicles. The second specimen preserves similar vertebrae, teeth, propodials, and pectoral elements. Their anatomical characteristics allow us to refer them to <i>Muraenosaurus</i>, a genus of cryptoclidid plesiosaur previously reported in Callovian rocks of Europe and Argentina. A third specimen is represented by a fragmentary jaw, which coincides precisely in size and anatomical features with that of <i>Vinialesaurus caroli</i>, another cryptoclidid plesiosaur exclusively known from the Oxfordian of Cuba. The material studied represents the first record of <i>Muraenosaurus</i> in the Oxfordian of the Profeta-La Ternera Basin in northern Chile, adding to previous regional occurrences of the genus and to the record of <i>Cryptoclidus</i>, both also known from the Callovian of Argentina. On the other hand, the specimen referred to <i>Vinialesaurus</i> is the first appearance of this genus in the Southern Hemisphere. These new records give strong support to the exchange of marine vertebrates between the northern Tethys and the southern Pacific through the Caribbean Seaway during the Middle and Late Jurassic.
DOI: 10.6084/m9.figshare.13622558.v1
title: Establishment and analysis of a novel miRNA prognostic risk model for bladder cancer based on TCGA database

description: 膀胱癌是最常见的泌尿道肿瘤，并且由于缺乏可靠的诊断标记物，大多数膀胱癌被诊断为晚期。本研究在TCGA数据库中分析了膀胱癌患者的转录组和临床数据，经过预处理后将其分为试验组和验证组。首先，通过单变量Cox回归分析确定与膀胱癌预后密切相关的miRNA，然后通过多变量Cox回归分析建立基于miRNA表达谱的预后风险模型。通过ROC分析确定患者分类风险水平的最佳分界点，并在验证组和整个组中通过Kaplan-Meier估计来验证预后风险评分类型。 从miRTarBase，targetScan和miRDB的三个miRNA库中至少选择了两个可能的靶基因，并进行了KEGG途径和GO富集分析。所有这些交叉基因都是通过PPI网络和生存分析构建的。最后，建立了5-miRNA（hsa-miR-338-5p，hsa-miR-218-1-3p，hsa-miR-17-3p，hsa-miR-6728-5p，hsa-miR-10a- 3p）已成功构建。多变量Cox分析显示，它具有良好的可预测性，可作为预测膀胱癌患者预后和生存的新生物标志物，并可通过IGF1发挥其生物学功能。
DOI: 10.6084/m9.figshare.11611491.v1
title: asd-sibs-faces

description: 'alg_valid' contains data points used for comparing facial distances between boys and girls without a family history of autism. <br><br>'main_data' contains data points used for comparing facial distances between non-autistic siblings of autistic children and children without a family history of autism. <br><br>.rda is a R readable data file. .csv format is available as well. <br>
DOI: 10.6084/m9.figshare.13515122.v1
title: publication_data_CalCEN_v1.0.0_20201230.tar.gz

description: Data for<br> TR O'Meara, MJ O'Meara, M Sphere, 2020 DeORFanizing Candida albicans Genes using Co-Expression<br>Code available athttp://github.com/momeara/CalCEN<br><br>Candida Albicans Co-Expression Network (CalCEN) version 1.0.0<br><br>Fileschromsome_features.tsv - Candida albicans SC5314chromsome features collected from Candida Genome Database 12-Jun 2018<br>genes.tsv - Curated set of 6226 genes use in this study<br>expression_runs.tsv - Curated set of RNA-seq runs used in this study<br>estimated_expression.tsv - gene by RNA-seq run expression levels<br>CalCEN_network.tsv - Co-expression network<br>blastp_network.tsv - blastp sequence similarity network<br>sac_gene.tsv - genetic associations between orthologous Sac genes Network<br>sac_gene.tsv - physical protein-protein interaction between orthologous Sac genes Network<br>yeast_net_network.tsv - YeastNet between orthologous Sac genes network<br>go_annotations.tsv - GO annotations from Candida Genome Database collected 12-Jun 2018<br>gba_summary.tsv - Summary of guilt-by-association gene-function prediction<br>
DOI: 10.6084/m9.figshare.14528922.v2
title: South Africa climate-related finance data set.xlsx

description: Data set mapping climate finance to South Africa<br>
DOI: 10.6084/m9.figshare.23259716.v1
title: Supplementary Material for: Association between Parenchymal B-Cell Follicles and CT-Proven Enlarged Mediastinal Lymph Nodes in Patients with Pulmonary Fibrosis

description: <b><i>Background:</i></b> Mediastinal lymph node enlargement (MLNE) is a finding described in a subset of patients with idiopathic pulmonary fibrosis (IPF) and other interstitial lung diseases (ILDs) and is associated with accelerated disease progression and increased mortality. The cause of MLNE is still not known. Our hypothesis is that there is an association between MLNE and B-cell follicles in lung tissue, another aspect detectable in the lung tissue of patients with IPF and other ILDs. <b><i>Objectives:</i></b> The aim of this study was to assess if there is an association between MLNE and B-cell follicles in lung tissue in patients with IPF and other ILDs. <b><i>Method:</i></b> Patients having transbronchial cryobiopsies performed as part of an investigation for ILD were included in this prospective observational study. MLNE (smallest diameter ≥10 mm) were assessed in station 7, 4R, and 4L on high-resolution computed tomography scans. B-cell follicles were assessed on haematoxylin-eosin-stained specimens. Lung function, 6-minute walk test, acute exacerbation, and mortality were registered after 2 years. In addition, we investigated if the finding of B-cell follicles was consistent in patients who underwent both surgical lung biopsies (SLBs) and cryobiopsies. <b><i>Results:</i></b> In total, 93 patients were included for analysis (46% diagnosed with IPF, 54% diagnosed with other ILDs). MLNE was found in 26 (60%) of the IPF patients and in 23 (46%) of the non-IPF patients (<i>p</i> = 0.164). Diffusing capacity for carbon monoxide was significantly lower (<i>p</i> = 0.03) in patients with MLNE compared to patients without MLNE. B-cell follicles were found in 11 (26%) of the IPF patients and in 22 (44%) of the non-IPF patients (<i>p</i> = 0.064). Germinal centres were not seen in any of the patients. There was no association between MLNE and B-cell follicles (<i>p</i> = 0.057). No significant difference in change of pulmonary function test was seen at 2-year follow-up when comparing the patients with and without MLNE or B-cell follicles. In 13 patients, both SLBs and cryobiopsies were performed. The presence of B-cell follicles was not consistent when comparing the two different methods. <b><i>Conclusion:</i></b> MLNE is evident in a substantial part of patients with ILD and is associated with lower DLCO at inclusion. We could not demonstrate an association between histological B-cell follicles in biopsies and MLNE. A possible explanation for this is that the cryobiopsies might not have captured the changes we sought.
DOI: 10.17632/9r6yztyfd5
title: Stable isotopic and hydrochemical composition of selected European minewaters. LoCAL dataset

description: This Excel workbook contains raw isotopic and hydrochemical data from water samples collected from European mining environments in Derbyshire and Yorkshire (UK), Asturias (Spain) and Bytom (Poland). The data support the paper "On the common occurrence of sulphate with elevated δ34S in European mine waters: Sulphides, evaporites or seawater?", doi: 10.1016/j.coal.2020.103619, published in the International Journal of Coal Geology. Funding: This work was supported by the Low-Carbon After-Life (LoCAL) project under the European Commission Research Fund for Coal and Steel [Grant RFCR-CT-2014-00001]. AJB was funded by SUERC and the NERC NEIF Facility at SUERC. Isotopic analyses were carried out at the ICSF at SUERC [Grant: NERC Facility contract F14/G6/11/01]. NMB was funded by the University of Glasgow’s Lord Kelvin Adam Smith Research Fellowship.
DOI: 10.6084/m9.figshare.14502486.v1
title: Table S3 - ECTyper v1.0.0 allele database metadata

description: Table S3 - ECTyper v1.0.0 allele database metadata
DOI: 10.6084/m9.figshare.7729274.v1
title: Dataset of Hospital based surveillance study

description: This is a dataset of 5172 children (2-59 months) recruited as part of surveillance network of public and private hospitals that admitted children &lt; 5 years was formed after obtaining their written, informed consent to participate. Children hospitalized in the network hospitals with history of fast breathing with or without chest in-drawing, were screened. Included were children aged 2-59 months, hospitalized with symptoms of WHO defined CAP who resided in the study index district after informed, written parental consent. Excluded were those with cough and respiratory symptoms for more than 14 days (to exclude tuberculosis). Included children were followed up in the hospital to assess outcomes such as mortality. Socio-demographic, clinical anthropometric and laboratory/diagnostic tests information was collected from hospital records or by interviewing parents on a standardized and pre-tested questionnaire<br>
DOI: 10.6084/m9.figshare.19294580.v1
title: Qin_etal_2022_AEM_code_data

description: The MATLAB code and data for figures, tables, and results in the peer-reviewed paper "A deterministic model for understanding nonlinear viral dynamics in oysters" by Qubin Qin, Jian Shen, and Kimberly S. Reece, published in <i>Applied and Environmental Microbiology </i>in 2022. <br>Data sets of experimental results used in the example case studies are from published papers: the in-host dynamics of OsHV-1 in two oyster families are from Segarra et al. (2014) and the in-host dynamics of NoV and TV are from Drouaz et al. (2015), respectively.<br>Segarra A, Baillon L, Tourbiez D, Benabdelmouna A, Faury N, Bourgougnon N, Renault T. 2014. Ostreid herpesvirus type 1 replication and host response in adult Pacific oysters, <i>Crassostrea gigas</i>. Vet Res 45:103.<br>Drouaz N, Schaeffer J, Farkas T, Le Pendu J, Le Guyader FS. 2015. Tulane virus as a potential surrogate to mimic norovirus behavior in oysters. Appl Environ Microbiol 81:5249–5256.
DOI: 10.6084/m9.figshare.25976689.v1
title: Raw tree-level and SHAP metadata

description: Metadata describing important variables contained in the raw tree-level and SHAP data.
DOI: 10.6084/m9.figshare.28594571.v1
title: source data.xlsx

description: raw data for "Synergistic host-parasitoid antimicrobial peptide interactions ensure the survival of parasitized hosts"
DOI: 10.6084/m9.figshare.24486082.v1
title: Cultural affinities_ The Anglo-Saxon world vs. the Russian world. (respuestas).xlsx

description: This dataset contains the responses to the survey "Cultural affinities_ The Anglo-Saxon world vs. the Russian world", where 82 young participants from Spain, Russia, and Anglo-Saxon countries offered their <i>polarized replies</i> to 12 questions about the perception of socio-cultural referents from the Russian and Anglo-Saxon world. The survey is based on <i>polarized responses </i>because no equidistant answering possibility is offered to the participants, but only options that range from 1 to 4, with 1 being a clear choice for the Russian pole, 2 a moderate choice for the Russian pole, 3 a moderate choice for the Anglo-Saxon pole, and 4 a clear choice for the Anglo-Saxon pole.The survey was open and replied between the 9th and 29th of March 2023.
DOI: 10.6084/m9.figshare.28788236.v1
title: <b>Source data of Figure 4. Relative abundance of proteins and Trim-Away cocktail reagents in mouse embryos.</b>

description: This is the outcome of LC-MS/MS measurements conducted on samples of 2-cell mouse embryos (wild type), 24 h after microinjection, to estimate the amounts of antibody (rabbit IgG) and TRIM21 (translated from Trim21 mRNA) that should react with a protein of interest. Values are relative iBAQ values.
DOI: 10.17632/swnknpwj57
title: Data for: The influence of land finance and public service supply on peri-urbanization: Evidence from the counties in China