cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23609505.v3
title: Decoding statistics

description: Data contains the decoding accuracy for all the subject in the project: Speech prosody enhances the neural processing of syntax<br>The data contains the decoding in the MVPA per and post offset of the words as well as the temporal decoding as well the code to run it
DOI: 10.21954/ou.rd.24262912.v1
title: Covid Chronicles From the Margins: Consent Forms

description: Consent forms for the Covid Chronicles from the Margins project.
DOI: 10.6084/m9.figshare.17067368.v1
title: Interview Guide for Community Health Workers

description: A set of questions asked to community health workers to understand the assistance that they provide to patients affected by podoconiosis
DOI: 10.6084/m9.figshare.23732508.v1
title: Reference data for cropland

description: Cropland/non-cropland data
DOI: 10.6084/m9.figshare.17008363.v1
title: DATA.sav

description: This is the raw data collected through the Tencent questionnaire (a Chinese questionnaire collection tool) at the time of the experiment.
DOI: 10.6084/m9.figshare.8142926.v1
title: Mast cell counts and degranulation at sciatic nerve and DRG

description: Mast cells are counted at the sciatic nerve and DRG and presented as cells per ROI. Mcpt1 particles represent the extent of degranulation and are counted at the sciatic nerve and DRG--and are presented as Mcpt1 particles per ROI.
DOI: 10.6084/m9.figshare.25037651.v1
title: Supplementary Material for: Difelikefalin in Black/African American Hemodialysis Patients with Moderate-to-Severe Pruritus: Post-hoc Analysis of KALM-1 and KALM-2

description: Black and African American (AA) people are over-represented in the kidney failure population; therefore, the safety and efficacy of difelikefalin in Black/AA patients was evaluated. This was a post hoc, pooled exploratory subgroup analysis of the Phase 3 KALM-1 and -2 studies. Patients undergoing hemodialysis (HD) who had moderate-to-severe chronic kidney disease-associated pruritus (CKD-aP) at enrollment were stratified into self-reported Black/AA or White subgroups. Patients were randomized (1:1) to receive intravenous (IV) difelikefalin 0.5 µg/kg or placebo for 12 weeks. Difelikefalin efficacy was assessed with validated patient-reported outcome questionnaires: 24-hour Worst Itch Numerical Rating Scale (WI-NRS), 5-D itch, and Skindex 10. There were 249 (29.3%) patients from the KALM studies that self-identified as Black/AA (n=135 difelikefalin; n=114 placebo). Clinically meaningful (≥3-point) reduction in WI-NRS score was achieved by 47.9% of Black/AA patients with difelikefalin versus 24.6% with placebo (P&lt;0.001). More Black/AA patients achieved a ≥5-point 5-D itch total improvement (54.9% vs 35.7%; P=0.013) and a ≥15-point Skindex-10 score improvement with difelikefalin versus placebo (49.0% vs 28.9%; P=0.006) compared with White patients. Incidence of treatment-emergent adverse events (TEAEs) was higher for Black/AA patients (difelikefalin: 78.5%; placebo: 70.8%) versus White patients (difelikefalin: 64.8%; placebo: 61.8%). In this post hoc analysis, difelikefalin was efficacious in the Black/AA population and had an acceptable safety profile.
DOI: 10.6084/m9.figshare.11604192.v1
title: Labels for Hurricane Florence (2018) Emergency Response Imagery from NOAA

description: This csv file contains labels for &gt;300 images obtained by the US National Oceanic and Atmospheric Administration (NOAA) in response to Hurricane Florence. Images were taken on Sept. 17th 2018, and are downloadable from the NOAA Emergency Response Imagery website (see references below). All labeled images are from the ‘September 17 A 2018’ file. The 'image_id' column in the csv corresponds to the name of the JPEGs.<br>Images were tagged by the first 8 authors of this dataset. Each image was tagged 2-5 times by different people. Authorship order was derived by the number of images tagged. Image tagging was done using a bespoke dashboard built by five authors (author 9 through 13), under the supervision of the final author (author 14). <br> There are 10 columns in the csv:<br> 1) image_id — reports the name of the corresponding NOAA JPEG. <br>2) ocean - 1 if the image is all water. <br>3) development - 1 if the image has human development. <br>4) washover - 1 if a washover deposit can be seen in the image. <br>5) impact - based on the Sallenger (2000) ‘Storm Impact Scale for barrier islands’ (see references below). 0 is no visible impact, 1 for swash, 2 for collision, 3 for overwash, 4 for inundation. <br>6) terrain_inland - 1 if the image is an inland scene. <br>7) terrain_marsh - 1 if the image is a marsh scene. <br>8) terrain_river - 1 if image is of riverine scene. <br>9) terrrain_sandy_coastline - 1 if image is a sandy coastline scene. <br>10) terrain_undefined - 1 if no terrain type applies. <br> multiple terrain types can be specified for a given image — i.e., there can be multiple '1's for a given image in columns 6-10. <br>
DOI: 10.6084/m9.figshare.23899785.v1
title: RSMs information

description: Details of the R<sup>2</sup> simulation model (RSM).
DOI: 10.6084/m9.figshare.25031891.v2
title: Phylogenetic tree and corresponding alignment of 16S rRNA genes of members of family Midichloriaceae.

description: Midichloriaceae_16S.contree - file for phylogenetic tree of Midichloriaceae 16S rRNA genes.Midichloriaceae_16S_alignment.fa - file with trimmed alignment used for calculation of Midichloriaceae 16S rRNA phylogenetic tree.
DOI: 10.6084/m9.figshare.20963515.v1
title: QIIME2 codes for cyanobacterial ITS sequence analysis v2

description: QIIME2 codes for cyanobacterial 16S-23S rRNA ITS sequence analysis for next generation sequencing data.
DOI: 10.6084/m9.figshare.22762247.v2
title: Dataset for "Evaluating the Performance of Empirical Models of Total Electron Density and Whistler-mode Wave Amplitude in the Earth’s Inner Magnetosphere"

description: This is the dataset for the paper "Evaluating the Performance of Empirical Models of Total Electron Density and Whistler-mode Wave Amplitude in the Earth’s Inner Magnetosphere", submitted to Frontiers in Astronomy and Space Sciences by Qianli Ma.
<br>
Empirical models have been previously developed using the large dataset of satellite observations to obtain the global distributions of total electron density and whistler-mode wave power, which are important in radiation belt dynamics. In this paper, we apply the empirical models to construct the total electron density and the wave amplitudes of chorus and hiss, and compare them with the observations along Van Allen Probes orbits to evaluate the model performance. The empirical models are constructed using the Hp30 and SME (or SML) indices, and considering the plasmapause defined using the occurrence rate of high-density regions. The total electron density model provides a high correlation coefficient with the observation overall, while large deviations are found in the dynamic regions near the plasmapause or in the plumes. The chorus wave model generally agrees with the observation when the plasma trough region is correctly modelled and for the modest wave amplitudes of 10 – 100 pT. The model overestimates the wave amplitude when the chorus is not observed or weak in the plasma trough, and underestimates the wave amplitude when large amplitude chorus is observed. Similarly, the hiss wave model has good performance inside the plasmasphere when modest wave amplitudes are observed. When the modelled plasmapause does not agree with the observation, the chorus and hiss waves are miss-identified by the model compared to the observation, and large modelling errors occur. In addition, strong (&gt;200 pT) hiss waves are observed in the plumes, which are difficult to capture using the empirical model. We also evaluate four metrics for different empirical models which are parameterized by different indices. Among the tested models, the empirical model considering a plasmapause and controlled by Hp* (the maximum Hp30 during previous 24 h) and SME* (the maximum SME during previous 3 h) or Hp* and SML has the best performance with low errors and high correlation coefficients. Our study indicates that the empirical models are applicable for the prediction of density and whistler-mode waves with modest power, but large errors could occur especially when the plasmapause is highly dynamic or in the plumes.
DOI: 10.6084/m9.figshare.14695578.v1
title: EEG dataset for evaluation of a single-session SIT effect in healthy aging

description: Thirteen young adults (YA group, mean age 25.5, SD 5.3, 4F/9M) and eleven elderly adults (EA group, mean age 64.2, SD 7.1, 4F/7M) were recruited for the study. All subjects had no medical history of the neural pathological conditions, i.e., stroke, head trauma or tumors.<br><br>Each subject underwent the sensorimotor integration training (SIT) procedure which consisted in <i>N</i> repetitions of elementary sensorimotor integration task. The task required the participants to classify the duration of presented audio stimulus and execute of one of the motor actions (ME) depending on its duration. Specifically, the participant should clench left or right hand into a fist in response to short (SAS) or long (LAS) audio stimulus. The durations of SAS and LAS were 300 ms and 750 ms, respectively. During ME the hand should be held clenched until the next audio stimulus of the same duration, which informed the participant about the end of ME. The time interval required for SI and ME within single trail was chosen randomly in the range 4--5 s. The pause between the trials was also picked randomly within the range 6--8 s. See Fig. 1A for a single trial timeline. The audio stimuli were presented via audio speakers located on the table in front of the participant. During SIT each participant performed <i>N=</i>60 SI task repetitions (30 per stimulus). The overall duration of the experimental session was approximately 10 minutes per participant.<br><br>The raw EEG recordings were filtered using the 50 Hz Notch filter. Additionally, the data were filtered using the 5th-order Butterworth filter in the range 1-100 Hz to remove low-frequency artifacts. The ocular and cardiac artifacts were removed using the independent component analysis (ICA). The filtered time-series were segmented into 60 epochs 6 s long each according to the experiment protocol. Each epoch included 3 s of prestimulus EEG and 3 s of poststimulus EEG centered at the presentation of the first audio stimulus. <br> To evaluate the effect of SIT on cortical activation with trial progression the timeline of experimental session (<i>N=</i>60 epochs total, 30 per stimulus) was divided into four equal Intervals: <i>T1</i> (epochs 1-15); <i>T2</i> (epochs 16-30); <i>T3</i> (epochs 31-45); <i>T4</i> (epochs 46-60). Thus, the interval <i>T1</i> represented early phase, while the interval <i>T4</i> represented the last phase of the experiment. The data was then inspected manually and the epochs with the remaining artifacts were rejected. Finally, each interval contained 10 artifact-free epochs (5 epochs per stimulus), 40 total. See Fig. 1B for sampling epochs into sets.<br>Individual epochs for each subject are stored in the attached ._epo.fif files for <b>Python MNE</b> package for M/EEG analysis. Prefix <b>EA</b> or <b>YA</b> in the name of the file identifies the age group, which subject belongs to. Postfix <b>T1</b>, <b>T2</b>, <b>T3</b> or <b>T4</b> in the name of the file indicates the interval of SIT. <br>
DOI: 10.6084/m9.figshare.28765946.v1
title: Data Coaching Data Quality Assurance Dataset

description: Datasets underlying findings from a series of 3 data coaching visits provided to health workers at 231 facilities in 6 of Ghana's 16 regions supported by the US President's Malaria Initiative. Data were collected using the USAID Data Quality Assurance (DQA) tool.
DOI: 10.6084/m9.figshare.23910129.v1
title: Supplementary Material for: Resolving the Smoking Paradox: No Evidence for Smoking-Induced Preconditioning in Large Vessel Occlusion Stroke

description: Introduction: Smoking is an established risk factor for stroke. However, several studies have reported a better outcome after stroke for patients who smoke. According to this “smoking paradox” hypothesis, smoking might promote less severe strokes, higher collateral scores and smaller infarct cores. Methods: In this retrospective study, we screened data of 2980 acute ischemic stroke patients with MCA-M1 occlusion treated with mechanical thrombectomy. Patients were categorized according to smoking status (current, former or never). We assessed univariate associations between clinical characteristics and smoking status. Subsequently, we used adjusted regression analysis to evaluate associations of smoking with stroke severity on admission (NIHSS, primary endpoint), infarct core volume and collateral status (secondary endpoints). Results: Out of 320 patients, 19.7% (n = 63) were current and 18.8% (n = 60) former smokers. Admission NIHSS, reperfusion success and mRS after 3-6 months were similar in all groups. Current smokers were younger, more often male and less likely to have atrial fibrillation compared to former and never smokers. In regression analyses, smoking status was neither associated with admission NIHSS (estimate 0.54, 95% CI -1.27 – 2.35, p = 0.557) nor with collateral status (estimate 0.79, 95% CI 0.44 – 1.44, p = 0.447) or infarct core volume (estimate -0.69, 95% CI -15.15 – 13.77, p = 0.925 for current vs. never smokers). Discussion/Conclusion: We could not confirm the smoking paradox. Our results support the fact that smoking causes stroke at a younger age, highlighting the role of smoking as a modifiable vascular risk factor.
DOI: 10.6084/m9.figshare.25226366.v1
title: HVSMR-2.0 (cropped)

description: <b>HVSMR-2.0: A 3D cardiovascular MR dataset for whole-heart segmentation in congenital heart disease</b>Patients with congenital heart disease often have cardiac anatomy that deviates significantly from normal, frequently requiring multiple heart surgeries. Image segmentation from a preoperative cardiovascular magnetic resonance (CMR) scan would enable creation of patient-specific 3D surface models of the heart, which have potential to improve surgical planning, enable surgical simulation, and allow automatic computation of quantitative metrics of heart function. However, there is no publicly available CMR dataset for whole-heart segmentation in patients with congenital heart disease. Here, we release the HVSMR-2.0 dataset, comprising 60 CMR scans alongside manual segmentation masks of the 4 cardiac chambers and 4 great vessels. The images showcase a wide range of heart defects and prior surgical interventions. The dataset also includes masks of required and optional extents of the great vessels, enabling fairer comparisons across algorithms. Detailed diagnoses for each subject are also provided. By releasing HVSMR-2.0, we aim to encourage development of robust segmentation algorithms and clinically relevant tools for congenital heart disease.<i>cropped</i>: Manually cropped CMR images <i>pat#_cropped.nii.gz</i>, without image normalization, with corresponding whole-heart segmentations <i>pat#_cropped_seg.nii.gz</i> and endpoints files <i>pat#_cropped_seg_endpoints.nii.gz</i>.
DOI: 10.6084/m9.figshare.25308547.v1
title: Genedata Expressionist Module and processing parameters for quantification

description: All the module and search parameter used for analysis by Genedata Expressionist software
DOI: 10.6084/m9.figshare.28548992.v1
title: Analysis

description: Snow crab (<i>Chionoecetes opilio</i>) is considered an invasive species in the Barents Sea with first observations dating back to 1996. The Norwegian commercial fishery for snow crab has been increasing since it first commenced in 2012. This fishery adopted conical baited pots, similar to other fisheries targeting snow crab. During the last decade, different management measures have been implemented to ensure sustainability in this relatively new fishery. One central challenge is pot loss during deployment caused by challenging weather and operational conditions. Lost snow crab pots can have a considerable potential for continuous capture of crabs, so-called “ghost fishing,” which has been documented during lost gear retrieval and experimental trials. This study considered different scenarios of snow crab pot losses and associated economic implications. The results show that given the substantial number of pots used on snow crab fishing vessels, even small variations in pot loss rates (0.5 – 3.0% pot loss) can result in considerable differences in ghost fishing and associated environmental and economic effects. The estimated ghost fishing in this study ranged from 11.5 to almost 70 thousand kg ghost fished crabs during a 3-year period assuming 0.5 – 3.0% pot loss scenarios, resulting in significant differences in ghost fishing expressed in amount of snow crab and value of ghost fished catch. These results highlight the importance of all incentives and technical measures that can reduce pot losses and associated ghost fishing time.
DOI: 10.6084/m9.figshare.3564129.v1
title: Appendix C. Tidal lung volume (Vt), and supplemental tables and figures.

description: Tidal lung volume (Vt), and supplemental tables and figures.
DOI: 10.6084/m9.figshare.13340648.v1
title: Emission inventory of air pollutants and chemical speciation for detailed anthropogenic sources based on local measurements in the Yangtze River Delta region, China

description: In this study,<b> </b>a high-resolution air pollutant emission inventory for the Yangtze River Delta (YRD) region was updated for 2017 using emission factors and chemical speciation based mainly on local measurements. The inventory included 424 non-methane volatile organic compounds (NMVOC) and 43 particulate matter species (PM<sub>2.5</sub>) from 259 specific sources. The total emissions of SO<sub>2</sub>, NO<i><sub>x</sub></i>, CO, NMVOCs, PM<sub>10</sub>, PM<sub>2.5</sub>, and NH<sub>3</sub> in the YRD region in 2017 were 1,552, 3,235, 38,507, 4,875, 3,770, 1,597, and 2,467 Gg respectively. SO<sub>2</sub> and CO emissions were mainly from boilers, accounting for 49% and 73% of the total. Mobile sources dominated NO<i><sub>x</sub></i> emissions contributing 57% to the total. NMVOC emissions, mainly from industrial sources, made up 61% of the total. Dust sources accounted for 55% and 28% of PM<sub>10</sub> and PM<sub>2.5</sub> emissions respectively. Agricultural sources accounted for 91% of NH<sub>3</sub> emissions. Major PM<sub>2.5</sub> species were OC, Ca, Si, PSO<sub>4</sub> and EC, accounting for 9.0%, 7.0%, 6.4%, 4.6% and 4.3% of total PM<sub>2.5</sub> emissions respectively. The main species of NMVOCs were aromatic hydrocarbons, making up 25.3% of the total. Oxygenated volatile organic compounds contributed 21.9% to the total NMVOC emissions. Toluene had the highest comprehensive contribution to ozone (O<sub>3</sub>) and secondary organic aerosol (SOA) formation potentials, while other NMVOC included 1,2,4-trimethylbenzene, m,p-xylene, propylene, ethene, o-xylene, ethylbenzene. Industrial process and solvent use sources were the main sources of O<sub>3</sub> and SOA formation potential, followed by motor vehicles. Among industrial sources, chemical manufacturing, rubber & plastic manufacturing, appliance manufacturing and textile made significant contributions. This emission inventory should provide scientific guidance for future control of air pollutants in the YRD region of China.
DOI: 10.6084/m9.figshare.1144384.v1
title: Structures and topologies for raft simulations

description: The tar file contains all initial structures, the topologies, the simulation parameters, and the force field parameters for all simulations reported in the paper "Hydrophobic compounds reshape membrane domains", to be published on PLoS Computational Biology
DOI: 10.6084/m9.figshare.1301045.v1
title: Suicide prevention is possible: A perception after suicide attempt

description: Background: Suicide is a preventable cause of death, inspite of which its incidence is increasing worldwide. Very few studies are done to know the perception of suicide attempters regarding prevention of their suicide attempt. Such information may be helpful in implementing preventive strategies. This study was done to find out whether those who attempted suicide and recovered perceived that their suicide attempt could have been prevented or not.<br>Materials and Methods: Fifty consecutive subjects were recruited by purposive sampling method. These subjects were admitted for suicide attempt and were stable after medical management. Subjects were assessed using socio-demographic and clinical proforma, Pierce suicide intent scale and structured questionnaire to assess their perception regarding suicide. Group differences for categorical variables were examined with the chi-square test, whereas an independent 't' test was used for continuous variables.<br>Results: Analysis revealed that 80% of suicide attempters felt that their suicide attempt could have been prevented. 64% of the study subjects perceived that family members and near and dear ones could have helped in preventing their attempt while 16% of the study subjects perceived that society could have helped.<br>Conclusions: Majority of subjects on recovery from the suicide attempt perceived that their suicide attempt could have been prevented by family members, near and dear ones and society.
DOI: 10.6084/m9.figshare.14827590.v1
title: Supplementary Material for: Rapid Serological Tests for SARS-CoV-2: Diagnostic Performance of 4 Commercial Assays

description: <b><i>Objective:</i></b> To assess the diagnostic performance of lateral flow immunochromatographic assays (LFAs) of 4 different manufacturers to identify SARS-CoV-2 antibodies (IgM, IgG, or total), comparing them with the nucleic acid amplification test (NAAT) or the clinical defined test (definite or probable SARS-CoV-2 infection, respectively). <b><i>Methods:</i></b> One hundred nineteen serum samples were randomly selected by convenience and distributed in the following groups: (1) group with SARS-CoV-2 infection (<i>n</i> = 82; RT-qPCR positive [definite, <i>n</i> = 70] and probable [<i>n</i> = 12]); (2) other diseases (<i>n</i> = 27; other viruses identified [<i>n</i> = 8] and SARS of other etiologies [<i>n</i> = 19]); and (3) healthy control group (<i>n</i> = 10). LFAs of 4 manufacturers were compared: MedTest Coronavirus (COVID-19) IgG/IgM (MedLevensohn, Brazil); COVID-19 IgG/IgM ECO Test (Ecodiagnóstica, Brazil); Camtech COVID-19 IgM/IgG Rapid Test Kit (Camtech Diagnostics Pte Ltd, Singapore); and 1-Step COVID-19 Test for total antibodies (Guangzhou Wondfo Biotech Co., China). <b><i>Results:</i></b> The 4 tests studied showed high diagnostic performance characteristics for the diagnoses of definite or probable SARS-CoV-2 infection. The best measures were for the Wondfo test: sensitivity (86.59%; 95% CI: 77.26–93.11%), specificity (100%; 90.51–100%), DOR (257; 60–1,008), LR+ (33.43; 4.82–231.85), LR− (0.13; 0.08–0.23), accuracy (90.76%; 84.06–95.29%), and Matthews correlation coefficient (MCC) 0.82. Although considering only the probable SARS-CoV-2 infection (PCR−) cases, all the kits studied showed limited values. <b><i>Conclusion:</i></b> Our data demonstrate the excellent performance of LFA for the diagnoses of definite or probable SARS-CoV-2 infection. There was substantial heterogeneity in sensitivities of IgM and IgG antibodies among the different kits. LFA tests cannot replace molecular diagnostics but should be used as an additional screening tool.
DOI: 10.6084/m9.figshare.13670722.v2
title: Supplementary Data 2

description: Supporting data for paper "Mapping the maximum extents of urban green spaces in 1039 citiesusing dense satellite images" (https://iopscience.iop.org/article/10.1088/1748-9326/ac03dc/meta)<br>
DOI: 10.6084/m9.figshare.28706714.v1
title: Species_RA_Stat_File_SECC_Manuscript.xlsx

description: Species relative abundance for analysis in Naumann et al