cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.38771
title: Research data supporting "Quantised conductance of one-dimensional strongly-correlated electrons in an oxide heterostructure"

description: Raw data and Matlab scripts used to produce the figures in the associated paper.
DOI: 10.6084/m9.figshare.c.3630017_d3.v1
title: Additional file 6: of A network based approach to drug repositioning identifies plausible candidates for breast cancer and prostate cancer

description: is a table listing MAGs for breast cancer and prostate cancer, also has the listing enriched KEGG pathways in breast cancer and prostate cancer. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3630062_d6.v1
title: Additional file 3: Table S4 of Protein profile and protein interaction network of Moniliophthora perniciosa basidiospores

description: Orthologous sequences of genes from Ustilago maydis used to construct the network along with their annotations. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3630017_d12.v1
title: Additional file 5: of A network based approach to drug repositioning identifies plausible candidates for breast cancer and prostate cancer

description: lists FDA-approved and clinical drugs for breast and prostate cancer. (XLSX 52 kb)
DOI: 10.17863/cam.37370
title: Research data supporting "The assessment of local lattice strains in alloys using total scattering"

description: Data associated with publication "The assessment of local lattice strains in alloys using total scattering" Data contains a series of pair distribution function peaks, simulated under different sets of assumptions (as described in the paper). These include: Different methods of simulation: - Sum of Gaussian model (SGM) - assuming the first PDF peaks can be modelled by a sum of Gaussian partials - Spring model - Simulating a large box model using morse potential energy for each of the partials, with different equilbrium r values: Under changes in different variables: - Concentration - Varying the conctration of A(x)B(1-x) from x = 0 to 1 (in steps of 0.05) [in this case B is assumed to have a radius 5% larger than a with r_A=1.245 Angstrom and r_B=1.30725 Angstroms. These are carried out with no ordering in the system. - Ordering - Varying the nearest neighbour AB Warren-Cowley parameter from 0 (random) to -1/3 (ordered). These simulations are carried out for an alloy of composition AB, with the radii assumed previously. - r - Under different variations in the relative size of the atomic radii of atoms A and B. These are often also carried out under specific concentration ratios (AB, A2B, A3B) and with no ordering in the system. These simulations were also carried out with under different conditions of the relative scattering power of atoms A and B. These are indicated as: AeqB - the scattering lengths of the two atoms are the same AlB - the scattering length of A is less than B; B is twice as scattering as A AgB - the scattering length of A is great than B; A is twice as scattering as B Additional notes of the files names and headers can be found in "Notes_on_data.txt"
DOI: 10.6084/m9.figshare.c.3630062_d9.v1
title: Additional file 5: Table S2. of Protein profile and protein interaction network of Moniliophthora perniciosa basidiospores

description: Identification of spots marked with arrows on the reference gel. (XLS 213 kb)
DOI: 10.6084/m9.figshare.c.3630083_d3.v1
title: Additional file 3: of Age trends of genetic parameters, early selection and family by site interactions for growth traits in Larix kaempferi open-pollinated families

description: The data sets collected in our research. Site represents the collection site, Fam stands for the families and Rep stands for the block within sites. The letter of h stands for the HGT and the letter of b stands for the DBH. The number after the letters of h and b stand for the age. (XLSX 621Â kb)
DOI: 10.17863/cam.7001
title: Supporting research data for "One-Pot Acid-Catalyzed Ring-Opening/Cyclization/Oxidation of Aziridines with N-Tosylhydrazones: Access to 1,2,4-Triazines"

description: Characterisation data for all compounds synthetised and described in the manuscript.
DOI: 10.6084/m9.figshare.c.3630170_d1.v1
title: Additional file 1: of Potential effects of valproate and oxcarbazepine on growth velocity and bone metabolism in epileptic children- a medical center experience

description: The orginal data of the study. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3630206_d1.v1
title: Additional file 4: of Experiences of general practitioners, home care nurses, physiotherapists and seniors involved in a multidisciplinary home-based fall prevention programme: a mixed method study

description: SPSS data file seniors. (XLS 19 kb)
DOI: 10.6084/m9.figshare.c.3630206_d2.v1
title: Additional file 3: of Experiences of general practitioners, home care nurses, physiotherapists and seniors involved in a multidisciplinary home-based fall prevention programme: a mixed method study

description: SPSS data file health professionals. (XLS 71 kb)
DOI: 10.6084/m9.figshare.c.3630209_d2.v1
title: Additional file 3: of Positive selection on panpulmonate mitogenomes provide new clues on adaptations to terrestrial life

description: Comparison of models M0 (one-ratio), M1a (nearly neutral), and M2a (positive selection), and. Values in bold represent highly significant differences (p
DOI: 10.6084/m9.figshare.c.3630218_d9.v1
title: Additional file 1: Table S1. of Transcriptome analysis of human brain tissue identifies reduced expression of complement complex C1Q Genes in Rett syndrome

description: Tissue Composition. (XLS 6Â kb)
DOI: 10.6084/m9.figshare.c.3630218_d10.v1
title: Additional file 2: Table S2. of Transcriptome analysis of human brain tissue identifies reduced expression of complement complex C1Q Genes in Rett syndrome

description: List of Differentially Expressed Genes (RNA-seq). (XLS 50Â kb)
DOI: 10.17863/cam.30360
title: Research data supporting "The environmental costs and benefits of high-yield farming"

description: Raw data underlying the figures in Balmford et al. “The environmental costs and benefits of high-yield farming”. There are eight datasets, covering all farming sector-externality combinations studied in the associated paper. Across all datasets, rows represent a paired measure of yield and externality under a specific farming system or combination of management practices. Where farming sectors produce significant co-products (e.g. dairy systems producing milk and beef), allocated values of externality and yield have also been included. Rice-GHG, Rice-Water and Beef-GHG-empirical comprised of data from multiple published experimental or LCA-based studies. Data for Dairy-GHG, Dairy-N/P/Soil and Beef-GHG-Ruminant were produced using process-based models of dairy or beef farming systems. Wheat-GHG data were sourced from the Agricultural Greenhouse Gas Inventory Research Platform, with additional GHG sources accounted for using the Yara emissions database. Wheat-N data were sourced from Rothamsted’s long-term Broadbalk wheat experiment. Note: Data presented in the published figures for Rice-GHG, Rice-Water, Wheat-GHG, and Beef-GHG-empirical have undergone correction for site effects using generalised linear mixed models. The datasets here contain the raw data only, before modelling has been carried out. Full details of methods are given in the text of the associated paper. Important note: An author correction to the associated article in Nature Sustainability was published on 26 March 2019. As a result, an .xlsx file ('Wheat-GHG.xlsx') that was part of the original dataset uploaded has been replaced with the following file: 'Wheat-GHG - Correction070118.xlsx'.
DOI: 10.17863/cam.9915
title: Data supporting "Effects of culture conditions on the size, morphology and wet density of spores of Bacillus cereus 569 and Bacillus megaterium QM B1551"

description: Excel worksheets containing the data from the paper Figures and Supplementary Figures
DOI: 10.6084/m9.figshare.c.3630293_d1.v1
title: Additional file 2: of Relationship between early language skills and the development of inattention/hyperactivity symptoms during the preschool period: Results of the EDEN mother-child cohort

description: The dataset supporting the conclusion of this article. (XLSX 148Â kb)
DOI: 10.6084/m9.figshare.c.3630278_d6.v1
title: Additional file 11: of Genome-wide analysis of WRKY transcription factors in white pear (Pyrus bretschneideri) reveals evolution and patterns under drought stress

description: List of genes in enriched GO terms. (XLS 290Â kb)
DOI: 10.6084/m9.figshare.c.3630296_d2.v1
title: Additional file 3: Table S2. of Leptin and insulin up-regulate miR-4443 to suppress NCOA1 and TRAF4, and decrease the invasiveness of human colon cancer cells

description: Nanostring array results - all miRNA expression profiling data. (XLSX 174Â kb)
DOI: 10.6084/m9.figshare.c.3630278_d8.v1
title: Additional file 9: of Genome-wide analysis of WRKY transcription factors in white pear (Pyrus bretschneideri) reveals evolution and patterns under drought stress

description: List of genes in co-expression gene clusters. (XLS 1128Â kb)
DOI: 10.6084/m9.figshare.c.3630257_d12.v1
title: Additional file 1: of High variability of HIV and HCV seroprevalence and risk behaviours among people who inject drugs: results from a cross-sectional study using respondent-driven sampling in eight German cities (2011â  14)

description: Sample proportion and estimated population proportion estimates for all variables. (XLS 75Â kb)
DOI: 10.6084/m9.figshare.c.3630257_d12.v2
title: Additional file 1: of High variability of HIV and HCV seroprevalence and risk behaviours among people who inject drugs: results from a cross-sectional study using respondent-driven sampling in eight German cities (2011â  14)

description: Sample proportion and estimated population proportion estimates for all variables. (XLS 75Â kb)
DOI: 10.6084/m9.figshare.c.3630278_d9.v1
title: Additional file 8: of Genome-wide analysis of WRKY transcription factors in white pear (Pyrus bretschneideri) reveals evolution and patterns under drought stress

description: Protein sequences of PbWRKY TFs. (TXT 42Â kb)
DOI: 10.6084/m9.figshare.c.3630344_d1.v1
title: Additional file 3: Table S3. of Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

description: Table of all pairwise ANIm values. Table of pairwise ANIm values computed with JSpecies [72]. (XLSX 168 kb)
DOI: 10.6084/m9.figshare.c.3630326_d6.v1
title: Additional file 14: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Putative transposase genes encoded by Ab, MAC and MR. (XLS 10Â kb)
DOI: 10.6084/m9.figshare.c.3630350_d1.v1
title: Additional file 1: of Transcriptomic changes of Legionella pneumophila in water

description: Lp genes that are significantly up- or down-regulated in water. (XLSX 366 kb)
DOI: 10.6084/m9.figshare.c.3630326_d7.v1
title: Additional file 13: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: RIP frequency index in Ab, MAC and MR genomes. (XLS 8Â kb)
DOI: 10.6084/m9.figshare.c.3630326_d8.v1
title: Additional file 10: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Carbohydrate-degrading enzymes, arranged by CE family. (XLS 15Â kb)
DOI: 10.6084/m9.figshare.c.3630311_d7.v1
title: Additional file 7: of The role of the aryl hydrocarbon receptor in the development of cells with the molecular and functional characteristics of cancer stem-like cells

description: The data sets supporting the results of each of the figures in this article are included within this excel document. For further information, please contact the corresponding author. (XLSX 81 kb)
DOI: 10.6084/m9.figshare.c.3630326_d9.v1
title: Additional file 8: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Carbohydrate-degrading enzymes, arranged by GT family. (XLS 23Â kb)
DOI: 10.15468/dl.nf356w
title: Occurrence Download

description: A dataset containing 302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vespa soror Buysson, 1905)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 302 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037864-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3630323_d5.v1
title: Additional file 1: of The NAC transcription factor family in maritime pine (Pinus Pinaster): molecular regulation of two genes involved in stress responses

description: Names, gene accession numbers and sequences of the P. pinaster NAC proteins. (XLS 37 kb)
DOI: 10.6084/m9.figshare.c.3630326_d10.v1
title: Additional file 12: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Summary of RIP signatures in Ab, MAC and MR genomes. (XLS 46Â kb)
DOI: 10.6084/m9.figshare.c.3630326_d11.v1
title: Additional file 4: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: List of accession numbers for predicted NRPS gene cluster sequences identified in Ab, MAC and MR genomes. (XLS 10Â kb)
DOI: 10.6084/m9.figshare.c.3630326_d12.v1
title: Additional file 7: of Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp.

description: Carbohydrate-degrading enzymes, arranged by GH family. (XLS 67Â kb)
DOI: 10.6084/m9.figshare.c.3630344_d6.v1
title: Additional file 2: Table S2. of Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

description: Information regarding publicly available genomes examined in this study. Table of information regarding genomes included in this study. (XLSX 27 kb)
DOI: 10.17863/cam.44558
title: Research data supporting "Amino Acid Requirements of the Chinese Hamster Ovary Cell Metabolism during Recombinant Protein Production"

description: Dataset associated with the metabolic modelling of CHO cells producing recombinant antibodies. The relevant codes along with the individual Flux distributions of CHO cells (obtained by Flux balance analysis using the metabolic model iCHO1766) are recorded in response variations in the amino acid content of serum-free medium for (1) wild type cells, (2) cells, which express different types of monoclonal antibodies (mAbs) that display differences in mAb size and amino acid composition. Different regimes of amino acid supplementation were tested in silico, and how the intracellular flux distributions change in response to these variations are also recorded. For details about each folder in the compressed document, please refer to the publication (bioRχiv preprint: https://www.biorxiv.org/content/10.1101/796490v1).
DOI: 10.17863/cam.7924
title: Research data and algorithm supporting "Assessing the economic connectedness of the UK pharmaceutical and digital sectors by Input-Output Analysis"

description: This document contains the raw input data used in computations; the results generated from such computations, and the dashboard visualizations of such results underpinning the associated conference paper. A MATLAB code provides the computational devices to implement the formulae presented in the paper, and to obtain the results outlined in the paper, and presented in the Excel files as well as in the Tableau dashboards.
DOI: 10.6084/m9.figshare.c.3630404_d3.v1
title: Additional file 3: Table S1. of A path reconstruction method integrating dead-reckoning and position fixes applied to humpback whales

description: Posterior statistics and R ^ $$ \widehat{R} $$ values. Table with the mean, SD, and 95 % CI for the posterior distributions of parameters σ x , σ y , v x,1 cor , v y,1 cor , x x,1, x y,1, and the values of convergence statistic R ^ $$ \widehat{R} $$ . (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3630425_d1.v1
title: Additional file 1 of RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource

description: Output files. Each output format of the following RDF resources: i) the CHEBI database, ii) Reactome (Biopax level 3) database, iii) UniProt database, iv) SAPP. (1,572 kb)
DOI: 10.6084/m9.figshare.c.3630404_d6.v1
title: Additional file 1: of A path reconstruction method integrating dead-reckoning and position fixes applied to humpback whales

description: Example data set, JAGS model, and MATLAB code. Compressed file including the data set of whale 11, the JAGS model code, and example MATLAB code to process the data, fit the model, and reconstruct the high-resolution track shown in Fig.Â 3. (RAR 2041 kb)
DOI: 10.6084/m9.figshare.c.3630437_d1.v1
title: Additional file 1: of A tailored intervention to implement guideline recommendations for elderly patients with depression in primary care: a pragmatic cluster randomised trial

description: A complete presentation of our analysis, with univariate and multivariate mixed models, including the four effect modifiers. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3630440_d1.v1
title: MOESM1 of Transcriptomic alterations in the heart of non-obese type 2 diabetic Goto-Kakizaki rats

description: Additional file 1. Raw data of the DNA microarray.
DOI: 10.6084/m9.figshare.c.3630449_d1.v1
title: Additional file 3 of Does conservation account for splicing patterns?

description: ISREs with high affinity for RBPs. (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3630488_d3.v1
title: Additional file 9: Table S1. of Analysis of DNA methylation landscape reveals the roles of DNA methylation in the regulation of drug metabolizing enzymes

description: Levels of DNA methylation around the first exons of the UGT1A isoforms. The nine UGT1A isoforms were classified into two groups (hepatic and intestinal types). The levels of DNA methylation at individual CpG sites of the first exons were expressed as β values and separately compared between 18 adult livers and one normal small intestine (NSI) or one normal fetal liver (NLF). The β values colored in red were statistically higher than the median of β values of normal adult livers. The β values colored in blue were statistically lower than the median of β values of normal adult livers. The CpG sites proximal to TSS200 region (except TSS1500 region) were indicated by bold frame. (XLSX 15.2 KB)
DOI: 10.6084/m9.figshare.c.3630503_d1.v1
title: Additional file 5: Supplemental Tables. of Iron homeostasis in Arabidopsis thaliana: transcriptomic analyses reveal novel FIT-regulated genes, iron deficiency marker genes and functional gene networks

description: Table S1. List of genes that were found regulated in the inter-line and intra-line comparisons in six-day-old seedlings and roots of six-week-old plants and that were found in iron homeostasis-related clusters after hierarchical clustering of the seedling, root and combined expression data. Table S2. Lists of input genes and the output genes before and after each of the four filtering steps. The lists are sorted alphabetically. Table S3. Expression patterns of genes that are induced by FIT in six-day-old seedlings. The genes marked red were found regulated in seedlings but not in the root samples. The genes marked yellow have previously been associated with iron homeostasis. For comparison, the respective root expression patterns have been added to the right. Additionally, we have added a column (S) with selected publications in which mutants have been investigated or which establish a direct link to iron homeostasis. Table S4. Expression patterns of genes that are induced by FIT in roots of six-week-old plants. The genes marked red were found regulated in the root samples but not in seedlings. For comparison the respective seedling expression patterns have been added to the right. Table S5. Expression patterns of genes that are repressed by FIT in six-week-old roots. The genes marked red were found regulated in the root samples but not in seedlings. For comparison the respective seedling expression patterns have been added to the right. Table S6. Expression patterns of genes that are repressed by FIT in six-day-old seedlings. The genes marked red were found regulated in seedlings but not in the root samples. For comparison the respective seedling expression patterns have been added to the right. Table S7. List of genes that were found in common regulons with ≥ 4 nodes in the co-expression analysis of iron deficiency-induced genes in the virtual dataset. The numbers correspond to the numbering in Fig. 7. Table S8. List of primers which we used to validate the expression data of some iron homeostasis-related genes. (XLSX 197 kb)
DOI: 10.6084/m9.figshare.c.3630509_d1.v1
title: Additional file 9: of Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets

description: KEGG description of core proteins. (XLSX 515 kb)
DOI: 10.6084/m9.figshare.c.3630518_d1.v1
title: Additional file 1: of The adherence paradox: guideline deviations contribute to the increased 5-year survival of breast cancer patients

description: Common quality indicators valid across time intervals. Quality indicators of guideline adherence and guideline divergence valid in the time-intervals 1996â  97 or 2003â  04. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3630509_d2.v1
title: Additional file 6: of Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets

description: Eptiope analysis of 13 prioritized proteins. B-cell epitope predictions, T-cell epitope location, antigenicity, NetsurfP exposure of epitopes. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3630518_d2.v1
title: Additional file 2: of The adherence paradox: guideline deviations contribute to the increased 5-year survival of breast cancer patients

description: Quality indicators valid in each time-interval. Quality indicators of guideline adherence and guideline divergence valid in each time interval 1996â  97 and 2003â  04. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3630542_d3.v1
title: MOESM5 of Identification of brain-enriched proteins in the cerebrospinal fluid proteome by LC-MS/MS profiling and mining of the Human Protein Atlas

description: Additional file 5: Table 3. 78 tissue-enriched and group-specific candidates.
DOI: 10.6084/m9.figshare.c.3630509_d9.v1
title: Additional file 3: of Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets

description: Essential proteins: List of essential proteins (956) identified by employing DEG. (XLSX 98 kb)
DOI: 10.6084/m9.figshare.c.3630542_d5.v1
title: MOESM4 of Identification of brain-enriched proteins in the cerebrospinal fluid proteome by LC-MS/MS profiling and mining of the Human Protein Atlas

description: Additional file 4: Table 2. Group-enriched proteins of secreted/membrane origin.
DOI: 10.6084/m9.figshare.c.3630524_d5.v1
title: Additional file 7: of Genome-wide analysis of lectin receptor-like kinases in Populus

description: List of G-, L- and C-type LecRLKs in moss, shrub, corn, soybean and Eucalyptus. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3630560_d1.v1
title: Additional file 4: of Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae

description: Significant transcripts of Carbohydrate Active Enzymes (CAZy) by the presence of 10 different model oligosaccharides. Regulation is indicated by arrows. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3630560_d2.v1
title: Additional file 2: of Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae

description: The number of genes per GO term found to be significantly different in expression between each of the 10 sugars and glucose. (XLSX 15Â kb)