cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5121472.v1
title: Supplementary Material for: Identification and Overexpression of a Bifunctional Aldehyde/Alcohol Dehydrogenase Responsible for Ethanol Production in <i>Thermoanaerobacter mathranii </i>

description: <i>Thermoanaerobacter mathranii </i>contains four genes, <i>adhA, adhB, bdhA </i>and<i> adhE, </i>predicted to code for alcohol dehydrogenases involved in ethanol metabolism. These alcohol dehydrogenases were characterized as NADP(H)-dependent primary alcohol dehydrogenase (AdhA), secondary alcohol dehydrogenase (AdhB), butanol dehydrogenase (BdhA) and NAD(H)-dependent bifunctional aldehyde/alcohol dehydrogenase (AdhE), respectively. Here we observed that AdhE is an important enzyme responsible for ethanol production in <i>T. mathranii</i> based on the constructed <i>adh</i> knockout strains. An <i>adhE</i> knockout strain fails to produce ethanol as a fermentation product, while other <i>adh</i> knockout strains showed no significant difference from the wild type. Further analysis revealed that the Δ<i>adhE</i> strain was defective in aldehyde dehydrogenase activity, but still maintained alcohol dehydrogenase activity. This showed that AdhE is the major aldehyde dehydrogenase in the cell and functions predominantly in the acetyl-CoA reduction to acetaldehyde in the ethanol formation pathway. Finally, AdhE was conditionally expressed from a xylose-induced promoter in a recombinant strain (BG1E1) with a concomitant deletion of a lactate dehydrogenase. Overexpressions of AdhE in strain BG1E1 with xylose as a substrate facilitate the production of ethanol at an increased yield.
DOI: 10.6084/m9.figshare.7511852.v1
title: DRIP UNITS OPERATING WITH DILUTE LANDFILL LEACHATE

description: ABSTRACT: Drip irrigation systems stand out for the use of wastewater, by minimizing water losses and risks to the environment and public health, however, the clogging of emitters is a potential problem in this technology. The objective of this study was to evaluate the flow coefficient of variation (FCV) and the coefficient of statistical uniformity (CSU) of drip irrigation units operating with water-diluted landfill leachate. The experiment was conducted in a completely randomized split-plot design, with emitter types in the plots (G1 - non-pressure compensating, and G2, G3 and G4 - pressure compensating) and evaluation times in the subplots (0, 20, 40, 60 80, 100, 120, 140 and 160 hours), with four replications. The FCV, CSU and physicochemical and biological characteristic values of the dilute landfill leachate were determined every 20 hours to complete 160 hours of operation of the drip units. The biofouling caused major value changes in the FCV and the CSU of the drip unit with the G1 emitter (non-pressure compensating) compared to the units with the G2, G3 and G4 emitters (pressure compensating). The G3 emitter was the most adequate for applying the dilute landfill leachate.
DOI: 10.17632/vnhtxmc75y
title: SAD leaf rust of white oat

description: This dataset was used to validate a set of standard area diagrams for assessment of severity of leaf rust or crown rust (Puccinia coronata f.sp. avenae) of white oat. Ten raters assessed 55 leaves without aid and with a SAD.
DOI: 10.6084/m9.figshare.20063324.v1
title: Enem Dataset from 2013 to 2019

description: Student-level dataset encompassing ENEM exams taken from 2013 to 2019.
DOI: 10.17632/b73b5kmcwm
title: Comprehensive database of test transportation problems (balanced and unbalanced)

description: The database of test transportation problems presented with this article is a useful aid in assessing the accuracy of existing and new methods for finding initial basic feasible (IBF) or optimal solution of transportation problems. The optimal solutions of these using MODI method, and IBF solutions using some conventional methods are planned to be presented in a forthcoming research paper for easiness of the researchers working in this domain.
DOI: 10.17632/n8r43gf2dm
title: Dataset for "Perceived Impact and Feasibility of Health Equity Policy Actions among Obesity Practitioners, Researchers, and Policymakers"

description: This is a survey dataset from a research survey of U.S. public health practitioners, local policymakers, and researchers active in obesity policy or health equity. They were surveyed to identify local policy actions most salient for addressing health equity. The survey was conducted August through November 2020. It asked respondents to select the most important health equity policy actions and rate them for potential impact for reducing health disparities and feasibility to put in place in the next five years. The Institutional Review Board of Washington University in St. Louis approved this study (IRB ID Number: 202006056). There are two files provided: survey dataset (csv file), and the data dictionary (xlsx file). The survey dataset includes responses from 195 respondents who completed the minimum number of questions necessary for analysis (i.e., selecting the top 10 most important policy actions).
DOI: 10.6084/m9.figshare.1269323.v3
title: Onset of Sediment Motion - Nature Communications Paper 2014 - Data

description: Dataset corresponding to data represented in the paper published at Nature Communications: Onset of sediment transport is a continuous transition driven by fluid shear and granular creep by Morgane Houssais1∗, Carlos P. Ortiz1,2∗, Douglas J. Durian2 and Douglas J. Jerolmack1 1 Department of Earth and Environmental Science, University of Pennsylvania, 2 Department of Physics and Astronomy, University of Pennsylvania ∗ Authors contributed equally to this work
DOI: 10.6084/m9.figshare.15090111.v1
title: Apoptosis

description: the apoptosis of the cells
DOI: 10.6084/m9.figshare.19093835.v5
title: Test data of combined heat and power system

description: A testing CHP system includes a 6-bus electric power network and an 8-node heat network. The heat network consists of eight nodes, seven pipelines, two CHP units, four heat loads, and a heat storage tank connected to node 1.
DOI: 10.6084/m9.figshare.19319897.v2
title: Dataset 6 Biolog Time Series Data

description: Dataset 6: All Biolog Data
DOI: 10.6084/m9.figshare.19416806.v1
title: clinvar_discordances.xlsx

description: Pre-computed lists of ‘variant pairs’ with two ClinVar variants for - PS1 Strong Evidence (VUS and P/LP variant encoding the same amino acid substitution) PM5 Moderate Evidence (VUS and P/LP variant encoding distinct amino acid substitutions at the same codon)
DOI: 10.6084/m9.figshare.24464203.v1
title: Figure 2_2d plot by JMP

description: The dataset for the article "The current utilization status of wearable devices in clinical research".Analyses were performed by utilizing the JMP Pro 16.10.The file extension "jrp" is a file of the statistical analysis software JMP, which contains both the analysis code and the data set.In case JMP is not available, a "csv" file as a data set and JMP script, the analysis code, are prepared in "rtf" format.JMP repot files used to create the figures（Figure 2. 2D scatterplot of relationships between annual enrollment and trial number over time）,including the csv dataset of JMP repot files and JMP scripts.Figure 2. 2D scatterplot of relationships between annual enrollment and trial number over time2d plot.jrp2d plot(JMP script).rftdataset_2d.csv<br><br>
DOI: 10.6084/m9.figshare.24783765.v1
title: NLCD_HUC8.csv

description: NLCD_HUC8.csv is the output from ArcGIS National Land Cover Database categories at the HUC-8 level for each NEON aquatic site (includes NEON sites not used in our analyses) for the manuscript "Abiotic variables drive different aspects of fish community trait variation and species richness across the continental United States" in Journal of Animal Ecology (2025).
DOI: 10.6084/m9.figshare.27312108.v2
title: 20241215_DNA nanophage_Source data

description: Source data
DOI: 10.6084/m9.figshare.27968283.v3
title: Data and R.Skript

description: <b>Tree-related microhabitats along a successional gradient in a tropical rainforest</b>
DOI: 10.6084/m9.figshare.28736129.v1
title: Radar Data

description: <code><strong>Doppler_241212160200_Station1.mat</strong></code>Description: Doppler time–frequency data from <b>Station 1</b>, recorded on <b>December 12, 2024 at 16:02:00</b>Environment: <b>Non-through-wall</b> Purpose: Primary dataset for open indoor Doppler analysis.<code><strong>Doppler_241212160200_Station2.mat</strong></code>Description: Doppler data from <b>Station 2</b>, recorded at the same time as Station 1.Environment: <b>Non-through-wall</b>Purpose: Complementary dataset to Station 1 for dual-radar triangulation.<code><strong>Doppler_241211172300_Station1.mat</strong></code>Description: Doppler data from <b>Station 1</b>, recorded on <b>December 11, 2024 at 17:23:00</b>Environment: <b>Through-wall</b> Purpose: Dataset for analyzing Doppler signal degradation due to wall propagation.<code><strong>Doppler_241211172300_Station2.mat</strong></code>Description: Corresponding through-wall Doppler data from <b>Station 2</b>Environment: <b>Through-wall</b>Purpose: Used in conjunction with Station 1 for dual-radar through-wall experiments
DOI: 10.17632/v7kjs729bm
title: Raw dataset of mental health problems in female university students in Bangladesh

description: Dataset regarding the mental health of poor and developing countries are limited. This raw data is about the prevalence and associated factors for poor mental health of university students in Bangladesh. We believe this data would help the policymakers of government and non-government organizations to analyze and develop interventions to support the mental health of students.
DOI: 10.6084/m9.figshare.29095013.v1
title: <b>Impact of Magnitude and Duration of Soil Warming on Bacterial Communities and Nitrogen Cycling in the Rhizosphere and Bulk Soil of Subarctic Grasslands</b>

description: Global warming driven by anthropogenic activities has significantly altered terrestrial ecosystems in northern latitudes, including subarctic grasslands. This study examines how the magnitude and duration of soil warming influence bacterial community structure, abundance, and nitrogen cycling in the rhizosphere and bulk soil compartments of two geothermally warmed Icelandic subarctic grasslands (GN: 11–13 years and GO: &gt;60 years warmed). These sites serve as models for understanding global warming effects, employing temporal sampling across soil warming gradients ranging from ambient to +15.0℃. The results revealed that bacterial abundances showed significant warming thresholds at lower temperature increases in the rhizospheres (+0.83℃ in GN, +1.34℃ in GO) compared to bulk soils (+1.42℃ in GN; no threshold detected in GO), with abundances declining below these thresholds, indicating greater warming sensitivity of rhizosphere communities. Bacterial community composition changed mainly through species replacement, likely influenced by increased dispersal limitation under increasing temperature. Warming structured microbial co-occurrence networks into distinct modules, with genera that increased under warming dominating positive associations and genera that declined dominating negative associations, particularly in both compartments of GO. This suggests that long-term exposure led to microbial adaptations, resulting in site-specific responses. Although elevated temperature did not alter the overall abundance of organisms involved in major nitrogen cycling processes, species replacement was detectable at genera and phylotype levels across all groups. Regardless of duration, <i>nosZ</i>-type denitrifiers decreased with warming. However, warming did not affect the abundance of total ammonia oxidizers and increased <i>nirS</i>-type denitrifiers in both soil compartments of GO, potentially enhancing nitrogen loss and nitrous oxide emissions. These findings emphasize the importance of long-term studies and compartment-specific analyses to understand microbial community dynamics and their impact on ecosystem processes under global warming.
DOI: 10.6084/m9.figshare.11894691.v2
title: Processed HSPCs single-cell RNA-seq, Seurat object

description: Processed hematopoietic stem and progenitor cell (HSPC) single-cell RNAseq data from human samples. The file contains a Seurat object stored as an .rds file which can be read into R with the readRDS() function. It was generated using the raw data of similar name in this project, as well as the code stored here: https://github.com/dtm2451/ProgressiveHematopoiesis
DOI: 10.6084/m9.figshare.17031884.v2
title: R Code for PCA Analysis

description: R Code for PCA analysis<br>
DOI: 10.17632/x83f4kkr9v
title: Characterization of immune cells in oral tissues of non-human primates

description: In this study, we assess immune cell populations across non-human primate (NHP), Macaca nemestrina oral tissues. Specifically, we assess tissue biopsies (Bx, Unbr) and cytobrushed (CB, Cybr) samples taken from buccal, sublingual, and lingual tonsil tissues. We also assess immune populations across sex and age differences. All samples are measured using flow cytometry to quantify relative cell frequencies as well as normalized cell quantities per tissue mass, or brushing, to assess the overall density of immune cell populations. Immune cells are determined from live, CD45+ leukocytes. Of these leukocytes, we identify CD45+CD3+ T-cells, CD45+CD3-CD20+ B-cells, and CD45+CD3-CD20-CD11c+ antigen-presenting cells (APCs). Finally, we assess subpopulations of T-cells and APCs. T-cells are further delineated as CD45+CD3+CD4+ or CD45+CD3+CD8+. APCs are separated as CD45+CD20-CD11c+CD1a+ Langerhans Cells (LCs) or CD45+CD20-CD11c+CD11b+ submucosal dendritic cells (SMDCs). Considering that the NHP model better represents the human immune system than mouse models, we believe these data can provide important information for understanding oral health. Further, these data can inform the optimal location and delivery strategies for novel oral mucosal vaccination methods.
DOI: 10.6084/m9.figshare.23807199.v1
title: Expert judgments of ecosystem viability - datasets

description: Individual judgements of ecosystem viability Individual judgements and individual site covariates of ecosystem viability for box-gum grassy woodlands for box-gum grassy woodlands. Expert affiliation and management expertise clusters
DOI: 10.17632/rxhmcjswzx
title: Supplementary Table S1: Time-series ECG data of arrhythmic patients and normal controls smoothened by Savitzky-Golay filter.

description: Full-length ECG time series data of 48 arrhythmic patients has been collected from popular MIT-BIH Arrhythmia Database [1-3]. The data sets include ECG time series data of 25 men aged between 32 to 89 years and of 22 women aged between 23 to 89 years. On the other hand, the normal data (healthy person) has been collected from the MIT-BIH Normal Sinus Rhythm Database [4] consisting of 18 long-term ECG signals of subjects having no significant arrhythmia. The subjects include 5 men and 13 women, aged between 26 to 45 and 20 to 50 respectively. The signal used here for the analysis is a modified limb lead II (MLII), obtained by placing the electrodes on the chest of the patients. We did not include the records of two patients with patient IDs 102 and 104 from MIT-BIH Arrhythmia Database as the required MLII data were not available due to surgical dressings on the above-mentioned patients. On the other hand, we also consider the data from ECG1 mode which are ECG signals (Normal Sinus Rhythm Database) relating to healthy persons and these data sets are regarded as complementary to MLII data of the arrhythmia database. Here, total no. of data points of each of the disease data series is 21600 with frequency 360.01 per sec whereas the same for the normal data series is 7680 with frequency 128 per sec. Therefore, each of the data series is recorded for 60 sec time duration. A filter is utilized for processing of signals in order to selectively isolate a particular frequency or range of frequencies from an assortment of multiple frequencies in a signal. The choice of appropriate filter for processing of the system generated signals requires maximum noise reduction with minimal signal distortion [5]. One of the best filters for noise clearing of biomedical data, including ECG signals, seems to be Savitzky–Golay (SG) filter [6]. The fundamental principle of SG filter is to consider (2n + 1) equidistant points taking n = 0 as a centre to represent a polynomial of degree p (where p &lt; (2n + 1)). A set of points is to be fitted to some curve. For this purpose, SG filter computes the value of the least square polynomial (or its derivative) at a point, i = 0, over the decided frame range. This filter applies the method of linear least squares for data smoothing, which helps to maintain the original shape of the signal. The SG filter generally requires pre-determined values of order and frame depending on the frequency and length of the data. Usually, trial and error method or prior experience is required to decide the satisfactory values of parameters. Here, the values of “Frame” for diseased and normal data were assumed to be 37 and 13 respectively and the “Order” of the filter were 3 for each type of data sets. The ‘Supplementary Table SI’ contains the filtered data sets for both types of disease and normal subject.
DOI: 10.6084/m9.figshare.1018771.v1
title: Cytokines measured with ELISA kits

description: RAW 264.7 cells were treated with welding fumes suspensions or 1 μg/ml LPS (endotoxin, positive control) for 24 h. Media were collected, and ELISAs were run to measure levels of TNFα, IL-6, and IL-1β. Values represent means from replicate wells per condition.
DOI: 10.6084/m9.figshare.21751217.v1
title: Scenedemsus-like microalgae alignment file

description: An alignment file of ITS2 sequences of Scenedesmus-like microalgae
DOI: 10.6084/m9.figshare.24297532.v3
title: The Application Form to the CPHG Dataset

description: This is the Application Form to require approval for usage of the CPHG dataset.
DOI: 10.17632/5n376rhxx9
title: Seasonal profiling of bacterial communities and anthropogenic contamination of hospital wastewater reveals the presence of ESKAPE bacteria and antimicrobial resistance genes

description: Data generated and used for the interpretation of massive metagenomic DNA sequencing information from hospital wastewater.
DOI: 10.6084/m9.figshare.11968551.v1
title: data_water-717367

description: Figure data for water-717367
DOI: 10.6084/m9.figshare.22324963.v1
title: Intracellular Environment Can Change Protein Conformational Dynamics in Cells through Weak Interactions

description: Matlab scripts used to process GB3L NMR data,including that of CPMG,R1,R2,NOE,RDC.
DOI: 10.17632/xj76z9st2w
title: Site-specific D-H exchange of amino acids under asteroidal hydrothermal conditions

description: This is the data in the manuscript of "Site-specific D-H exchange of amino acids under asteroidal hydrothermal conditions"
DOI: 10.25375/uct.24884280.v1
title: Google Earth Engine (GEE) Sentinel-2 land cover classification and Landsat harmonised time series analyses from 1990 until 2020

description: This dataset was used to produce land cover change analyses for chapters two and three as part of a master's thesis titled- Repeatable methods for classification of Alien and native vegetation in the Montane grasslands (2024).<br>The dataset forms an integral part of feeding data to the Google Earth Engine (GEE) analyses. The data is loaded together with GEE code to first assess the performance of using a single-date composite image vs multi-temporal Sentinel-2 imagery in mapping alien and native vegetation in the Blyde River Canyon Conservancy and its surrounds. Afterwards, the code is used to produce a harmonised time series of land cover change between 1990 and 2020 in the Blyde River Canyon Conservancy and its surrounds for the third chapter.In the second chapter 9 data entries are used to assess the performance of using a single-date composite image vs multi-temporal and they are listed as follows: -Data points chapter 2 (variable points in GEE scripts)-Study area (variable roi in GEE scripts)-GEE_classified_map_2ndChapter_Figure2.6 (variable image in GEE scripts)-Single-date composite image - GEE Analysis-Single-date composite image- Surface Reflectance GEE functions (variable singlefunctions in GEE script)-Multi-temporal analysis- data prep GEE script-Multi-temporal analysis-model fitting GEE script-Multi-temporal analysis-plotting results GEE script-Multi-temporal analysis-Surface Reflection GEE functions (variable tsfunctions in GEE scripts)The third chapter contains 24 data entries to create a harmonised time series of land cover change between 1990 and 2020 in the Blyde River Canyon Conservancy using the data below:-Both Data prep and model fitting scripts from 1990 until 2020 (22 items)-BKSS zipfile (variable study_area in GEE scripts)-data points chapter 3 (variable alldata in GEE scripts)<br>Date of data collection: February 2020.Location of data collection: Blyde River Canyon Conservancy and its surrounds, in Mpumalanga/Limpopo Provinces, South Africa.<br>
DOI: 10.6084/m9.figshare.25533121.v1
title: vetcor-p16-p19.csv

description: Vector<sup>OE</sup>, p16<sup>OE</sup> and p19<sup>OE</sup> CD8<sup>+</sup> T cells were stained with PE-anti-Thy1.1 antibody and sorted by using flow cytometry. Then, RNA was extracted with TRIzol from indicated T cells. RNA integrity was evaluated using the Agilent 2100 Bioanalyzer (Agilent). The libraries were constructed using the TruSeq RNA sample prep kit (FC­122­1001, Illumina). The libraries were then sequenced using an Illumina NovaSeq 6000 (PE150) platform, and approximately 40 million paired­end reads were generated (Novogene). RNA sequencing was conducted and the data were processed by the bioinformatic core at the Suzhou Institute of Systems Medicine.
DOI: 10.17632/42smbdsnn3
title: Malic enzyme 2 resists ferroptosis of cervical cancer cells by modulating succinylation of KEAP1 under energy stress conditions

description: Raw data
DOI: 10.17632/zjyngpbj37
title: LINF_190009900

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.1012428.v1
title: Experimentally obtained anisotropy parameters β<sub>2</sub> and β<sub>4</sub>, and the extracted values of <em>W</em> and Δ

description: <b>Table 1.</b> Experimentally obtained anisotropy parameters β<sub>2</sub> and β<sub>4</sub>, and the extracted values of <em>W</em> and Δ. <strong>Abstract</strong> The two-photon ionization of helium atoms by ultrashort extreme-ultraviolet free-electron laser pulses, produced by the SPring-8 Compact SASE Source test accelerator, was investigated at photon energies of 20.3, 21.3, 23.0 and 24.3 eV. The angular distribution of photoelectrons generated by two-photon ionization is obtained using a velocity map imaging spectrometer. The phase-shift differences and amplitude ratios of the outgoing s and d continuum wave packets are extracted from the photoelectron angular distributions. The obtained values of the phase-shift differences are distinct from scattering phase-shift differences when the photon energy is tuned to a resonance with an excited level or Rydberg manifold. The difference stems from the co-presence of resonant and non-resonant path contributions in the two-photon ionization by femtosecond pulses. Since the relative contribution of both paths can be controlled in principle by the pulse shape, these results illustrate a new way to tailor the continuum wave packet.