cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh430533.07fu
title: SH430533.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1797562.08fu
title: SH1797562.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5517/ccdc.csd.cc2c8p2f
title: CCDC 2183084: Experimental Crystal Structure Determination

description: Related Article: Eric Anthony, Axel Klein|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8p3g
title: CCDC 2183085: Experimental Crystal Structure Determination

description: Related Article: Anandhan Ramasamy|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29bv7r
title: CCDC 2125584: Experimental Crystal Structure Determination

description: Related Article: Fuwan Zhai, Hui Li, Daxiang Gui, Chuanqin Xia, Zhifang Chai, Shuao Wang|2022|Dalton Trans.|51|16448|doi:10.1039/D1DT04099E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7308916
title: CLAMPS2 Doppler Lidar VAD Data

description: These files contain 24 hour periods of data collected from the CLAMPS2 Halo Streamline XR+ Doppler lidar. The Doppler lidar conducts regular conical scans at a set elevation angle. These data are then passed through a typical VAD algorithm to retrieve horizontal wind speed and direction profiles. These data were collected during the SPLASH project.
DOI: 10.5281/zenodo.7308917
title: CLAMPS2 Doppler Lidar VAD Data

description: These files contain 24 hour periods of data collected from the CLAMPS2 Halo Streamline XR+ Doppler lidar. The Doppler lidar conducts regular conical scans at a set elevation angle. These data are then passed through a typical VAD algorithm to retrieve horizontal wind speed and direction profiles. These data were collected during the SPLASH project.
DOI: 10.6084/m9.figshare.21529077
title: GSM1371837_MB_Foxk1.bigWig

description: bigWig file
DOI: 10.6084/m9.figshare.21529077.v1
title: GSM1371837_MB_Foxk1.bigWig

description: bigWig file
DOI: 10.6084/m9.figshare.21528930
title: Data set - Oral manifestations associated with Novel Coronavirus Disease - 2019 (COVID -19): A questionnaire based hypothetical study

description: This data collection was done by means of a comprehensive survey questionnaire which was converted into an online format by using the QuestionPro® software, to enquire about the systemic and oral manifestation related symptoms of <strong>COVID-19 </strong>patients. The questionnaire was in accordance with the current literature available about the novel SARS-CoV-2 and COVID-19. <br> The Institutional Review Board of Imam Abdulrahman Bin Faisal University, Dammam, Kingdom of Saudi Arabia approved the study (IRB# 2020-02-220).
DOI: 10.6084/m9.figshare.21528930.v4
title: Data set - Oral manifestations associated with Novel Coronavirus Disease - 2019 (COVID -19): A questionnaire based hypothetical study

description: This data collection was done by means of a comprehensive survey questionnaire which was converted into an online format by using the QuestionPro® software, to enquire about the systemic and oral manifestation related symptoms of <strong>COVID-19 </strong>patients. The questionnaire was in accordance with the current literature available about the novel SARS-CoV-2 and COVID-19. <br> The Institutional Review Board of Imam Abdulrahman Bin Faisal University, Dammam, Kingdom of Saudi Arabia approved the study (IRB# 2020-02-220).
DOI: 10.6084/m9.figshare.21528930.v3
title: Data set - Oral manifestations associated with Novel Coronavirus Disease - 2019 (COVID -19): A questionnaire based hypothetical study

description: This data collection was done by means of a comprehensive survey questionnaire which was converted into an online format by using the QuestionPro® software, to enquire about the systemic and oral manifestation related symptoms of <strong>COVID-19 </strong>patients. The questionnaire was in accordance with the current literature available about the novel SARS-CoV-2 and COVID-19. <br> The Institutional Review Board of Imam Abdulrahman Bin Faisal University, Dammam, Kingdom of Saudi Arabia approved the study (IRB# 2020-02-220).
DOI: 10.25952/kk33-tk97
title: Datafile for meta-analysis on the efficacy of assertiveness training for social anxiety

description: This is the datafile for a meta-analysis. The meta-analysis synthesised research assessing the efficacy of assertiveness training for reducing social anxiety. A comprehensive search led to six relevant randomised control trials (RCTs) with a total of 298 participants. Meta-analysis using a random-effects model showed that assertiveness training was significantly more effective for reducing social anxiety than a wait-list control. The weighted meta-analytic effect size, g = 1.21, indicates a large positive effect. These results support the use of assertiveness training for persistent social anxiety.
description: This is the datafile for a meta-analysis. The meta-analysis synthesised research assessing the efficacy of assertiveness training for reducing social anxiety. A comprehensive search led to six relevant randomised control trials (RCTs) with a total of 298 participants. Meta-analysis using a random-effects model showed that assertiveness training was significantly more effective for reducing social anxiety than a wait-list control. The weighted meta-analytic effect size, g = 1.21, indicates a large positive effect. These results support the use of assertiveness training for persistent social anxiety.
DOI: 10.5281/zenodo.7007630
title: Datasets for "Needle in a Bayes Stack: a Hierarchical Bayesian Method for Constraining the Neutron Star Equation of State with an Ensemble of Binary Neutron Star Post-merger Remnants"

description: All data used for "Needle in a Bayes Stack: a Hierarchical Bayesian Method for Constraining the Neutron Star Equation of State with an Ensemble of Binary Neutron Star Post-merger Remnants", Criswell, A.W., et al. (2022). The code used to create the paper results from this data can be found at https://github.com/criswellalexander/hbpm_paper and the underlying software package can be found at https://github.com/criswellalexander/bayestack.
DOI: 10.5281/zenodo.7007629
title: Datasets for "Needle in a Bayes Stack: a Hierarchical Bayesian Method for Constraining the Neutron Star Equation of State with an Ensemble of Binary Neutron Star Post-merger Remnants"

description: All data used for "Needle in a Bayes Stack: a Hierarchical Bayesian Method for Constraining the Neutron Star Equation of State with an Ensemble of Binary Neutron Star Post-merger Remnants", Criswell, A.W., et al. (2022). The code used to create the paper results from this data can be found at https://github.com/criswellalexander/hbpm_paper and the underlying software package can be found at https://github.com/criswellalexander/bayestack.
DOI: 10.5517/ccdc.csd.cc2c8p4h
title: CCDC 2183086: Experimental Crystal Structure Determination

description: Related Article: Anandhan Ramasamy|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8q5k
title: CCDC 2183118: Experimental Crystal Structure Determination

description: Related Article: Z.A. Starikova, N.D. Chaknikov|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c3v3g
title: CCDC 2178435: Experimental Crystal Structure Determination

description: Related Article: Prasenjit Sarkar, Amrit Sarmah, Chandan Mukherjee|2022|Dalton Trans.|51|16723|doi:10.1039/D2DT01868C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c3v4h
title: CCDC 2178436: Experimental Crystal Structure Determination

description: Related Article: Prasenjit Sarkar, Amrit Sarmah, Chandan Mukherjee|2022|Dalton Trans.|51|16723|doi:10.1039/D2DT01868C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d3bd8
title: CCDC 2207739: Experimental Crystal Structure Determination

description: Related Article: Valerii Y. Sirenko, Olesia I. Kucheriv, Elzbieta Gumienna-Kontecka, Sergiu Shova, Il'ya A. Gural'skiy|2022|Dalton Trans.|51|16536|doi:10.1039/D2DT03025J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d3bf9
title: CCDC 2207740: Experimental Crystal Structure Determination

description: Related Article: Valerii Y. Sirenko, Olesia I. Kucheriv, Elzbieta Gumienna-Kontecka, Sergiu Shova, Il'ya A. Gural'skiy|2022|Dalton Trans.|51|16536|doi:10.1039/D2DT03025J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15131/shef.data.21526146
title: Innovation and elaboration on the avian tree of life

description: Data to reproduce the analysis in "Innovation and elaboration on the avian tree of life". <br> The code to reproduce the analyses can be found on GitHub: https://github.com/TGuillerme/elaboration_exploration_bird_beaks <br> This folder contains all the raw and cluster-ran data used for the analysis. [![DOI](https://zenodo.org/badge/337779300.svg)](https://zenodo.org/badge/latestdoi/337779300) <br> This folder contains the specific sub-folders: <br> ## Raw Contains the beak data (in `Beak_data`), the trees (in `Tree_data`) and the clades information. <br> ## Processed This folder contains the results of the `mcmcmcglmmm` for all birds (`shapespace_allbirds_lvl_superorder_order.MCMCglmm`) and for the passeriformes (`shapespace_passeriformes.MCMCglmm`). These data can be calculated using the [`02-mcmcmcglmmm_analysis.Rmd`](https://github.com/TGuillerme/elaboration_exploration_bird_beaks/tree/master/Analysis) but takes 3 CPU years.
DOI: 10.15131/shef.data.21526146.v1
title: Innovation and elaboration on the avian tree of life

description: Data to reproduce the analysis in "Innovation and elaboration on the avian tree of life". <br> The code to reproduce the analyses can be found on GitHub: https://github.com/TGuillerme/elaboration_exploration_bird_beaks <br> This folder contains all the raw and cluster-ran data used for the analysis. [![DOI](https://zenodo.org/badge/337779300.svg)](https://zenodo.org/badge/latestdoi/337779300) <br> This folder contains the specific sub-folders: <br> ## Raw Contains the beak data (in `Beak_data`), the trees (in `Tree_data`) and the clades information. <br> ## Processed This folder contains the results of the `mcmcmcglmmm` for all birds (`shapespace_allbirds_lvl_superorder_order.MCMCglmm`) and for the passeriformes (`shapespace_passeriformes.MCMCglmm`). These data can be calculated using the [`02-mcmcmcglmmm_analysis.Rmd`](https://github.com/TGuillerme/elaboration_exploration_bird_beaks/tree/master/Analysis) but takes 3 CPU years.
DOI: 10.6084/m9.figshare.21521037.v1
title: Supplemental File 4- Replicate four data for array to F1 integrations

description: An excel document containing the array and F1 barcodes, counts, normalized frequencies, and delta frequency for replicate four.
DOI: 10.6084/m9.figshare.21521040
title: Supplemental File 3- Replicate three data for array to F1 integrations

description: An excel document containing the array and F1 barcodes, counts, normalized frequencies, and delta frequency for replicate three.
DOI: 10.6084/m9.figshare.21521040.v1
title: Supplemental File 3- Replicate three data for array to F1 integrations

description: An excel document containing the array and F1 barcodes, counts, normalized frequencies, and delta frequency for replicate three.
DOI: 10.6084/m9.figshare.21521043.v1
title: Supplemental File 2- Replicate two data for array to F1 integrations

description: An excel document containing the array and F1 barcodes, counts, normalized frequencies, and delta frequency for replicate two.
DOI: 10.6084/m9.figshare.21521037
title: Supplemental File 4- Replicate four data for array to F1 integrations

description: An excel document containing the array and F1 barcodes, counts, normalized frequencies, and delta frequency for replicate four.
DOI: 10.6084/m9.figshare.21521043
title: Supplemental File 2- Replicate two data for array to F1 integrations

description: An excel document containing the array and F1 barcodes, counts, normalized frequencies, and delta frequency for replicate two.
DOI: 10.6084/m9.figshare.21521046
title: Supplemental File 1- Replicate one data for array to F1 integrations

description: An excel document containing the array and F1 barcodes, counts, normalized frequencies, and delta frequency for replicate one.
DOI: 10.6084/m9.figshare.21521046.v1
title: Supplemental File 1- Replicate one data for array to F1 integrations

description: An excel document containing the array and F1 barcodes, counts, normalized frequencies, and delta frequency for replicate one.
DOI: 10.6084/m9.figshare.21521028
title: Supplemental File 7- Array 3 profile 1 PX818 Barcode Counts

description: An excel document containing all barcode sequences and frequencies found in array 3 PX818 profile 1 across four individual worms.
DOI: 10.6084/m9.figshare.21521031
title: Supplemental File 6- Array 2 PX817 Barcode Count

description: An excel document containing all barcode sequences and frequencies found in array 2 PX817 across six individual worms.
DOI: 10.6084/m9.figshare.21521034.v1
title: Supplemental File 5- Array 1 PX816 Barcode Count

description: An excel document containing all barcode sequences and frequencies found in array 1 PX816 across six individual worms.
DOI: 10.6084/m9.figshare.21521025
title: Supplemental File 8- Array 3 profile 2 PX818 Barcode Counts

description: An excel document containing all barcode sequences and frequencies found in array 3 PX816 profile 2 across two individual worms.
DOI: 10.6084/m9.figshare.21521025.v1
title: Supplemental File 8- Array 3 profile 2 PX818 Barcode Counts

description: An excel document containing all barcode sequences and frequencies found in array 3 PX816 profile 2 across two individual worms.
DOI: 10.6084/m9.figshare.21521028.v1
title: Supplemental File 7- Array 3 profile 1 PX818 Barcode Counts

description: An excel document containing all barcode sequences and frequencies found in array 3 PX818 profile 1 across four individual worms.
DOI: 10.6084/m9.figshare.21521031.v1
title: Supplemental File 6- Array 2 PX817 Barcode Count

description: An excel document containing all barcode sequences and frequencies found in array 2 PX817 across six individual worms.
DOI: 10.6084/m9.figshare.21521034
title: Supplemental File 5- Array 1 PX816 Barcode Count

description: An excel document containing all barcode sequences and frequencies found in array 1 PX816 across six individual worms.
DOI: 10.6084/m9.figshare.21391317
title: Supplemental File 13- Split Selection Landing Pad (SSLP) Sequences

description: All landing pad sequences along with limited surrounding genomic region used in this study and described in the manuscript
DOI: 10.6084/m9.figshare.21391317.v1
title: Supplemental File 13- Split Selection Landing Pad (SSLP) Sequences

description: All landing pad sequences along with limited surrounding genomic region used in this study and described in the manuscript
DOI: 10.6084/m9.figshare.21521007
title: Supplemental File 12- Plasmid Sequences

description: Plasmids used in this study and described in the manuscript
DOI: 10.15151/esrf-es-967510039
title: Structural Biology at EMBL Grenoble, IBS-CIBB and IAB

description: This proposal clusters crystallography projects at the EMBL Grenoble, IBS and IAB working on different topics with a focus on nucleic acid-protein complexes and host-pathogen interactions. The proposers have long-standing experience in the use, as well as the development of beam lines for macromolecular crystallography and have participated in successive BAG applications over the years, mostly at the ESRF but also at other synchrotrons (i.e. Soleil, Petra II, Diamond, SLS)
DOI: 10.5281/zenodo.7308456
title: Sampling time-dependent artifacts in single-cell genomics studies: scRNA-seq data

description: Robust protocols and automation now enable large-scale single-cell RNA and ATAC sequencing experiments and their application on biobank and clinical cohorts. However, technical biases introduced during sample acquisition can hinder solid, reproducible results, and a systematic benchmarking is required before entering large-scale data production. Here, we report the existence and extent of gene expression and chromatin accessibility artifacts introduced during sampling and identify experimental and computational solutions for their prevention. This repository contains the expression matrices and Seurat objects associated with the scRNA-seq data of the manuscript: "Sampling time-dependent artifacts in single-cell genomics studies" published in Genome Biology in 2020. The purpose of this repo is to share processed files and metadata for immediate access and reproducibility. The code to analyze it is thoroughly documented at the associated Github repository (https://github.com/massonix/sampling_artifacts).
description: {"references": ["Massoni-Badosa, R., Iacono, G., Moutinho, C. et al. Sampling time-dependent artifacts in single-cell genomics studies. Genome Biol 21, 112 (2020). https://doi.org/10.1186/s13059-020-02032-0"]}
DOI: 10.5281/zenodo.7308457
title: Sampling time-dependent artifacts in single-cell genomics studies: scRNA-seq data

description: Robust protocols and automation now enable large-scale single-cell RNA and ATAC sequencing experiments and their application on biobank and clinical cohorts. However, technical biases introduced during sample acquisition can hinder solid, reproducible results, and a systematic benchmarking is required before entering large-scale data production. Here, we report the existence and extent of gene expression and chromatin accessibility artifacts introduced during sampling and identify experimental and computational solutions for their prevention. This repository contains the expression matrices and Seurat objects associated with the scRNA-seq data of the manuscript: "Sampling time-dependent artifacts in single-cell genomics studies" published in Genome Biology in 2020. The purpose of this repo is to share processed files and metadata for immediate access and reproducibility. The code to analyze it is thoroughly documented at the associated Github repository (https://github.com/massonix/sampling_artifacts).
description: {"references": ["Massoni-Badosa, R., Iacono, G., Moutinho, C. et al. Sampling time-dependent artifacts in single-cell genomics studies. Genome Biol 21, 112 (2020). https://doi.org/10.1186/s13059-020-02032-0"]}
DOI: 10.5281/zenodo.6578909
title: FES-TSA target domain logits

description: Cached target domain logits for ConFES and ReFES.
DOI: 10.5281/zenodo.7308658
title: Transcriptomic analysis demonstrates the expression, origin and function of lncRNAs in multiple skin diseases

description: Transcriptomic analysis demonstrates the expression, origin and function of lncRNAs in multiple skin diseases
DOI: 10.5281/zenodo.7308657
title: Transcriptomic analysis demonstrates the expression, origin and function of lncRNAs in multiple skin diseases

description: Transcriptomic analysis demonstrates the expression, origin and function of lncRNAs in multiple skin diseases