cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12849542
title: Conformationally mobile acyclic cucurbit[n]uril-type receptors derived from an S-shaped methylene bridged glycoluril pentamer

description: We report the synthesis of the conformationally mobile S-shaped glycoluril pentamer building block <b>3a</b> and two new acyclic CB[n]-type receptors <b>P1</b> and <b>P2. P1</b> (9 mM) and <b>P2</b> (11 mM) have moderate aqueous solubility but their host•guest complexes are poorly soluble. Host <b>P1</b> does not undergo intermolecular self-association whereas <b>P2</b> does (K<sub>s</sub> = 189 ± 27 M<sup>−1</sup>). <sup>1</sup> H NMR titrations show that <b>P1</b> and <b>P2</b> are poor hosts towards hydrophobic (di)cations <b>6</b>–<b>11</b> (<b>P1</b>: K<sub>a</sub> = 375–1400 M<sup>−1</sup>; <b>P2</b>: K<sub>a</sub> = 1950–19,800 M<sup>−1</sup>) compared to <b>Tet1</b> and <b>Tet2</b> (<b>Tet1</b>: K<sub>a</sub> = 3.09 x 10<sup>6</sup> to 4.69 × 10<sup>8</sup> M<sup>−1</sup>; <b>Tet2</b>: K<sub>a</sub> = 4.59 x 10<sup>8</sup> to 1.30 × 10<sup>10</sup> M<sup>−1</sup>). Molecular modelling shows that <b>P1</b> and <b>P2</b> exist as a mixture of three different conformers due to the two S-shaped methylene bridged glycoluril dimer subunits that each possess two different conformations. The lowest energy conformers of <b>P1</b> and <b>P2</b> do not feature a well-defined central cavity. In the presence of guests, <b>P2</b> adapts its conformation to form 1:1 <b>P2</b>•guest complexes; the binding free energy pays the energetic price of conformer selection. This energetically unfavourable conformer selection results in significantly decreased K<sub>a</sub> values of <b>P1</b> and <b>P2</b> compared to <b>Tet1</b> and <b>Tet2</b>.
DOI: 10.25919/phyk-2m57
title: Parkes observations for project P1021 semester 2021APRS_02

description: We propose to continue our observations of PSR J1653-45, a 951-ms pulsar in a long, 1.5-yr orbit, which experiences apparent eclipses whose nature have yet to be fully understood. Binary pulsars are valuable objects of scientific study, allowing for multiple applications including tests of gravity, probes of the neutron star equation of state, and fossil records of stellar evolution. Long spin-period pulsars in binary systems are generally much rarer than faster-spinning `recycled’ pulsars, and represent an under-explored region of pulsar binary evolution. Based upon previous Parkes and ATCA proposals, our understanding of this pulsar has significantly increased. We have detected the pulsar in previously unexplored regions of its orbit, localised its position, and have constrained the start of the eclipse, such that a targeted campaign in the 2021APRS semester (during which the next eclipse is expected) will provide the breakthrough needed to solve and understand this pulsar. We therefore propose a high-cadence campaign with observations at least 1.4 times more sensitive than any previously recorded with Parkes during the eclipse. These observations will constrain the end of the eclipse and ensure that we detect the pulsar as early and often as possible, leading to a phase connected timing solution which will unlock the pulsar’s scientific potential. Through this, we hope to gain a greater understanding of this pulsar’s properties (as well as those of its companion) and how it fits into this under-explored class of unrecycled pulsar binaries.
DOI: 10.5281/zenodo.4614573
title: Dataset of Laboratory experiments on tsunamigenic discrete subaqueous volcanic eruptions. Part 2: Properties of generated waves

description: This dataset contains the wave data and water surface profile data in the manuscript 2020JC016587 "Laboratory experiments on tsunamigenic discrete subaqueous volcanic eruptions. Part 2: Properties of generated waves" by Yaxiong Shen, Colin Whittaker, Emily Lane, James White, William Power, Paraskevi Nomikou submitted to JGR Oceans. The folder "fountainboundaryfig8" contains data for figure 8. The Matlab scripts fountainboundary.m are used to visualise it. The wave data is stored in the wavedata.xlsx.
DOI: 10.5281/zenodo.4614572
title: Dataset of Laboratory experiments on tsunamigenic discrete subaqueous volcanic eruptions. Part 2: Properties of generated waves

description: This dataset contains the wave data and water surface profile data in the manuscript 2020JC016587 "Laboratory experiments on tsunamigenic discrete subaqueous volcanic eruptions. Part 2: Properties of generated waves" by Yaxiong Shen, Colin Whittaker, Emily Lane, James White, William Power, Paraskevi Nomikou submitted to JGR Oceans. The folder "fountainboundaryfig8" contains data for figure 8. The Matlab scripts fountainboundary.m are used to visualise it. The wave data is stored in the wavedata.xlsx.
DOI: 10.6084/m9.figshare.3761562.v1857
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25345/c5rj8w
title: MassIVE MSV000087352 - Tiny Earth class project AH48 student samples
title: Student samples with different culturing conditions of AH48 strains were run on the QExactive.
DOI: 10.5517/ccdc.csd.cc25l05z
title: CCDC 2013300: Experimental Crystal Structure Determination

description: Related Article: Jonghoon Choi, Sun Hee Kim, Yunho Lee|2021|Inorg.Chem.|60|5647|doi:10.1021/acs.inorgchem.0c03676
DOI: 10.5517/ccdc.csd.cc25l060
title: CCDC 2013301: Experimental Crystal Structure Determination

description: Related Article: Jonghoon Choi, Sun Hee Kim, Yunho Lee|2021|Inorg.Chem.|60|5647|doi:10.1021/acs.inorgchem.0c03676
DOI: 10.5517/ccdc.csd.cc25l071
title: CCDC 2013302: Experimental Crystal Structure Determination

description: Related Article: Jonghoon Choi, Sun Hee Kim, Yunho Lee|2021|Inorg.Chem.|60|5647|doi:10.1021/acs.inorgchem.0c03676
DOI: 10.5517/ccdc.csd.cc268ly1
title: CCDC 2034063: Experimental Crystal Structure Determination

description: Related Article: Wenlin Jiang, Zitong Liu, Danlei Zhu, Wenyu Zheng, Liangliang Chen, Xisha Zhang, Guanxin Zhang, Yuanping Yi, Lang Jiang, Deqing Zhang|2021|Angew.Chem.,Int.Ed.|60|10700|doi:10.1002/anie.202102131
DOI: 10.5517/ccdc.csd.cc268lz2
title: CCDC 2034064: Experimental Crystal Structure Determination

description: Related Article: Wenlin Jiang, Zitong Liu, Danlei Zhu, Wenyu Zheng, Liangliang Chen, Xisha Zhang, Guanxin Zhang, Yuanping Yi, Lang Jiang, Deqing Zhang|2021|Angew.Chem.,Int.Ed.|60|10700|doi:10.1002/anie.202102131
DOI: 10.5517/ccdc.csd.cc26x44f
title: CCDC 2052824: Experimental Crystal Structure Determination

description: Related Article: Jonghoon Choi, Sun Hee Kim, Yunho Lee|2021|Inorg.Chem.|60|5647|doi:10.1021/acs.inorgchem.0c03676
DOI: 10.5517/ccdc.csd.cc26x45g
title: CCDC 2052825: Experimental Crystal Structure Determination

description: Related Article: Jonghoon Choi, Sun Hee Kim, Yunho Lee|2021|Inorg.Chem.|60|5647|doi:10.1021/acs.inorgchem.0c03676
DOI: 10.3886/e138562v1-85520
title: Harvard EPREP COVID-19 vaccine acceptance

description: Study of frontline workers to identify attitudes towards vaccine acceptance prior to widespread availability of COVID-19 vaccines in the United States.
description: Response Rates: Not calculated as the entire sample frame is not shared from survey research firm.
description: Purposive sample of vaccine priority group workers
description: Persons 18 years or older in the United States who were a member of a potential vaccine priority group. .
description: computer-assisted self interview (CASI);
DOI: 10.6084/m9.figshare.13720050.v1
title: The SgenoLasso and its cousins for selective genotyping and extreme sampling: application to association studies and genomic selection

description: We introduce a new variable selection method, called SgenoLasso, that handles extreme data. Our method relies on the construction of a specific statistical test, a transformation of the data and by the knowledge of the correlation between regressors. It is appropriate in genomics since once the genetic map has been built, the correlation is perfectly known. This new technique is inspired by stochastic processes arising from statistical genetics. We prove that the signal to noise ratio is largely increased by considering the extremes. Our approach and existing methods are compared on simulated and real data, and the results point to the validity of our approach.
DOI: 10.6084/m9.figshare.13720050
title: The SgenoLasso and its cousins for selective genotyping and extreme sampling: application to association studies and genomic selection

description: We introduce a new variable selection method, called SgenoLasso, that handles extreme data. Our method relies on the construction of a specific statistical test, a transformation of the data and by the knowledge of the correlation between regressors. It is appropriate in genomics since once the genetic map has been built, the correlation is perfectly known. This new technique is inspired by stochastic processes arising from statistical genetics. We prove that the signal to noise ratio is largely increased by considering the extremes. Our approach and existing methods are compared on simulated and real data, and the results point to the validity of our approach.
DOI: 10.15131/shef.data.3491387
title: Simulations on calcite-protein interactions

description: Sample input files of molecular dynamics calculations and pdb files of proteins and peptides, associated with paper: <br>Demarchi et al. (2016) Protein sequences bound to mineral surfaces persist into deep time. eLife 2016;5:e17092. DOI: 10.7554/eLife.17092<br>Proteins persist longer in the fossil record than DNA, but the longevity, survival mechanisms and substrates remain contested. Here, we demonstrate the role of mineral binding in preserving the protein sequence in ostrich (Struthionidae) eggshell, including from the palaeontological sites of Laetoli (3.8 Ma) and Olduvai Gorge (1.3 Ma) in Tanzania. By tracking protein diagenesis back in time we find consistent patterns of preservation, demonstrating authenticity of the surviving sequences. Molecular dynamics simulations of struthiocalcin-1 and -2, the dominant proteins within the eggshell, reveal that distinct domains bind to the mineral surface. It is the domain with the strongest calculated binding energy to the calcite surface that is selectively preserved. Thermal age calculations demonstrate that the Laetoli and Olduvai peptides are 50 times older than any previously authenticated sequence (equivalent to ~16 Ma at a constant 10°C).
DOI: 10.15131/shef.data.3491387.v1
title: Simulations on calcite-protein interactions

description: Sample input files of molecular dynamics calculations and pdb files of proteins and peptides, associated with paper: <br>Demarchi et al. (2016) Protein sequences bound to mineral surfaces persist into deep time. eLife 2016;5:e17092. DOI: 10.7554/eLife.17092<br>Proteins persist longer in the fossil record than DNA, but the longevity, survival mechanisms and substrates remain contested. Here, we demonstrate the role of mineral binding in preserving the protein sequence in ostrich (Struthionidae) eggshell, including from the palaeontological sites of Laetoli (3.8 Ma) and Olduvai Gorge (1.3 Ma) in Tanzania. By tracking protein diagenesis back in time we find consistent patterns of preservation, demonstrating authenticity of the surviving sequences. Molecular dynamics simulations of struthiocalcin-1 and -2, the dominant proteins within the eggshell, reveal that distinct domains bind to the mineral surface. It is the domain with the strongest calculated binding energy to the calcite surface that is selectively preserved. Thermal age calculations demonstrate that the Laetoli and Olduvai peptides are 50 times older than any previously authenticated sequence (equivalent to ~16 Ma at a constant 10°C).
DOI: 10.15131/shef.data.3468935
title: Data for ISMA2016 paper 'An exploratory study of the suitability of a wind turbine blade as a nonlinear demonstrator'

description: Matlab files (.mat) which contain the data used for the generation of the figures shown in the ISMA2016 conference paper named: 'An exploratory study of the suitability of a wind turbine blade as a nonlinear demonstrator'<br>
DOI: 10.15131/shef.data.5729079
title: Data for Optics Express paper: Investigation of temperature and temporal stability of AlGaAsSb avalanche photodiodes

description: Data for the paper:Salman Abdullah, Chee Hing Tan, Xinxin Zhou, Shiyong Zhang, Lucas Pinel, and Jo Shien Ng, "Investigation of temperature and temporal stability of AlGaAsSb avalanche photodiodes," Optics Express Vol. 25, Issue 26, pp. 33610-33616 (2017) https://doi.org/10.1364/OE.25.033610<br><br>This dataset contains two sets of data: 1. Raw data files in .xlsx format and 2. Figure files in .JPEG format.
DOI: 10.15131/shef.data.5729079.v1
title: Data for Optics Express paper: Investigation of temperature and temporal stability of AlGaAsSb avalanche photodiodes

description: Data for the paper:Salman Abdullah, Chee Hing Tan, Xinxin Zhou, Shiyong Zhang, Lucas Pinel, and Jo Shien Ng, "Investigation of temperature and temporal stability of AlGaAsSb avalanche photodiodes," Optics Express Vol. 25, Issue 26, pp. 33610-33616 (2017) https://doi.org/10.1364/OE.25.033610<br><br>This dataset contains two sets of data: 1. Raw data files in .xlsx format and 2. Figure files in .JPEG format.
DOI: 10.15131/shef.data.5519680
title: Moving from laboratory to real life conditions: Influence on the assessment of variability and stability of gait

description: Data for the paper: <br>MOVING FROM LABORATORY TO REAL LIFE CONDITIONS: INFLUENCE ON THE ASSESSMENT OF VARIABILITY AND STABILITY OF GAIT. <br>Gait & Posture, 2018, 59, 248-252 <br><br>
DOI: 10.15131/shef.data.5519680.v1
title: Moving from laboratory to real life conditions: Influence on the assessment of variability and stability of gait

description: Data for the paper: <br>MOVING FROM LABORATORY TO REAL LIFE CONDITIONS: INFLUENCE ON THE ASSESSMENT OF VARIABILITY AND STABILITY OF GAIT. <br>Gait & Posture, 2018, 59, 248-252 <br><br>
DOI: 10.15131/shef.data.5426683.v1
title: Data and figures associated with "The accuracy of 3D optical reconstruction and additive manufacturing processes in reproducing detailed subject-specific anatomy" publication

description: 3D reconstruction and 3D printing of subject-specific anatomy is a promising technology for supporting clinicians in the visualisation of disease progression and planning for surgical intervention. In this context, the 3D model is typically obtained from segmentation of MRI, CT or echocardiography images. Although these modalities allow imaging of the tissues in vivo, assessment of quality of the reconstruction is limited by the lack of a reference geometry as the subject-specific anatomy is unknown prior to image acquisition. In this work, an optical method based on 3D digital image correlation (3D-DIC) techniques is used to reconstruct the shape of the surface of an ex vivo porcine heart. This technique requires two digital CCD cameras to provide full-field shape measurements and to generate an STL file of the sample surface. The aim of this work was to quantify the error of 3D-DIC shape measurements using the additive manufacturing process. The limitations of 3D printed object resolution, the discrepancy in reconstruction of the surface of cardiac soft tissue and a 3D printed model of the same surface were evaluated. The results obtained demonstrated the ability of the 3D-DIC technique to reconstruct localised and detailed features on the cardiac surface with sub-millimeter accuracy.<br><i>Ferraiuoli, P.; Taylor, J.C.; Martin, E.; Fenner, J.W.; Narracott, A.J. (2017) The Accuracy of 3D Optical Reconstruction and Additive Manufacturing Processes in Reproducing Detailed Subject-Specific Anatomy. J. Imaging, 3(4), 45. doi:10.3390/jimaging3040045 </i>
DOI: 10.15131/shef.data.5426683
title: Data and figures associated with "The accuracy of 3D optical reconstruction and additive manufacturing processes in reproducing detailed subject-specific anatomy" publication

description: 3D reconstruction and 3D printing of subject-specific anatomy is a promising technology for supporting clinicians in the visualisation of disease progression and planning for surgical intervention. In this context, the 3D model is typically obtained from segmentation of MRI, CT or echocardiography images. Although these modalities allow imaging of the tissues in vivo, assessment of quality of the reconstruction is limited by the lack of a reference geometry as the subject-specific anatomy is unknown prior to image acquisition. In this work, an optical method based on 3D digital image correlation (3D-DIC) techniques is used to reconstruct the shape of the surface of an ex vivo porcine heart. This technique requires two digital CCD cameras to provide full-field shape measurements and to generate an STL file of the sample surface. The aim of this work was to quantify the error of 3D-DIC shape measurements using the additive manufacturing process. The limitations of 3D printed object resolution, the discrepancy in reconstruction of the surface of cardiac soft tissue and a 3D printed model of the same surface were evaluated. The results obtained demonstrated the ability of the 3D-DIC technique to reconstruct localised and detailed features on the cardiac surface with sub-millimeter accuracy.<br><i>Ferraiuoli, P.; Taylor, J.C.; Martin, E.; Fenner, J.W.; Narracott, A.J. (2017) The Accuracy of 3D Optical Reconstruction and Additive Manufacturing Processes in Reproducing Detailed Subject-Specific Anatomy. J. Imaging, 3(4), 45. doi:10.3390/jimaging3040045 </i>
DOI: 10.15131/shef.data.5414629
title: Data for: Tropical forests are thermally buffered despite intensive selective logging

description: Microclimate temperature for surface microclimates measured using a thermal camera, paired with macroclimate temperature and VPD measured using a whirling hygrometer. <br>Microclimate temperature for microclimates inside microhabitats (deadwood, tree holes and leaf litter), paired with macroclimate temperature and VPD, all measured using dataloggers. <br>Additional plot-level information: plot location and elevation; forest structure metrics (e.g. tree stand basal area); and microhabitat volume (per m^2 forest).<br>All variables in the main dataset are described in detail in the associated metadata file.
DOI: 10.15131/shef.data.5414629.v1
title: Data for: Tropical forests are thermally buffered despite intensive selective logging

description: Microclimate temperature for surface microclimates measured using a thermal camera, paired with macroclimate temperature and VPD measured using a whirling hygrometer. <br>Microclimate temperature for microclimates inside microhabitats (deadwood, tree holes and leaf litter), paired with macroclimate temperature and VPD, all measured using dataloggers. <br>Additional plot-level information: plot location and elevation; forest structure metrics (e.g. tree stand basal area); and microhabitat volume (per m^2 forest).<br>All variables in the main dataset are described in detail in the associated metadata file.
DOI: 10.6084/m9.figshare.5877474
title: Parent-glomerulus-identified, second order cells olfactory responses to odorants in awake mice.

description: Mitral/tufted cells recording on actively sniffing mice, while probing responses to m72 receptor ligands, including optogenetically identified putative M72 mitral/tufted cells.<br>If you use this dataset, please cite this repository and the corresponding paper https://<em>doi</em>.org/<em>10.1038</em>/<em>s41467</em>-<em>018-03837-1</em>
DOI: 10.6084/m9.figshare.5877474.v2
title: Parent-glomerulus-identified, second order cells olfactory responses to odorants in awake mice.

description: Mitral/tufted cells recording on actively sniffing mice, while probing responses to m72 receptor ligands, including optogenetically identified putative M72 mitral/tufted cells.<br>If you use this dataset, please cite this repository and the corresponding paper https://<em>doi</em>.org/<em>10.1038</em>/<em>s41467</em>-<em>018-03837-1</em>
DOI: 10.6084/m9.figshare.5877474.v1
title: units

description: Mitral/tufted cells recording on actively sniffing mice, while probing responses to m72 receptor ligands, including optogenetically identified putative M72 mitral/tufted cells.
DOI: 10.5281/zenodo.4732623
title: CoVaxxy Tweet IDs data set

description: A collection of Tweet IDs related to Covid-19 Vaccines, gathered from Twitter since Jan 4, 2021. Please see https://arxiv.org/abs/2101.07694 for more information.
DOI: 10.25346/s6/7utgqh/rqmiqi
title: Moderated Mediation Model Entry - ModMedDatabase.tab
DOI: 10.25346/s6/7utgqh
title: Moderated Mediation Article Database

description: https://www.jlfossum.com/home/moderated-mediation-article-database The purpose of this database is to make examples of published scientific journal articles that use particular moderated mediation models easier to find. You can search by any of the dropdown menus at the top of the database, including the model number or number of variables included in the model. Articles included in this database are not an endorsement of the quality of the work, but rather included as potential examples of moderated mediation. The Model Number uses the PROCESS macro numbering system (https://www.processmacro.org/) as a way to label where mediation and moderation happen in the model (i.e., Model Number 7 is a simple mediation model with moderation occurring on the path between the X variable and the mediator). Not all papers included use the PROCESS macro, but were classified by PROCESS model number based on the structure of their model if it matched a model in PROCESS.
DOI: 10.6084/m9.figshare.14525880
title: Gene database of Oryza sativa

description: <i>Oryza sativa</i> is an important food crop that feeds half of the world’s population. Thus, much interest exists in understanding genes-phenotype correlation for developing higher yield and better varieties able to handle drought and salt intrusion in rice fields. This work sought to provide foundational information about the genetic repertoire of the rice genome by parsing its annotated genome sequence downloaded from GenBank. Comprising gene name, gene function, and gene sequence, the resource should be useful as initial information for understanding genetic repertoire of rice, and serve as guide for molecular cloning and genome editing workflows.
DOI: 10.5281/zenodo.4732625
title: 7_redefinition_fundamental_physical_constants_2018

description: 7-redefinition-physical_constants
DOI: 10.5281/zenodo.4707164
title: 7_redefinition_fundamental_physical_constants_2018

description: 7-redefinition-physical_constants
DOI: 10.5281/zenodo.4732629
title: redefinition_fundamental_physical_constants_2018

description: 502redefinition_fundamental_physical_constants_2018
DOI: 10.5281/zenodo.4732630
title: redefinition_fundamental_physical_constants_2018

description: 502redefinition_fundamental_physical_constants_2018
DOI: 10.5281/zenodo.4732628
title: redefinition_fundamental_physical_constants_2018

description: 502redefinition_fundamental_physical_constants_2018
DOI: 10.5281/zenodo.4732643
title: Raytrace Simulation Results: WWV → WA5FRF, IRI, 5 MHz, January 2020

description: For comparison to an experiment conducted 29 January 2020. (The simulation was run for 20 January, but since monthly averages are used in IRI the results should not differ.) Video: https://youtu.be/Ph3cZPbySNo
DOI: 10.5281/zenodo.4732642
title: Raytrace Simulation Results: WWV → WA5FRF, IRI, 5 MHz, January 2020

description: For comparison to an experiment conducted 29 January 2020. (The simulation was run for 20 January, but since monthly averages are used in IRI the results should not differ.) Video: https://youtu.be/Ph3cZPbySNo
DOI: 10.5281/zenodo.4732646
title: Supplementary datasets "The largest plagiogranite on Earth formed by re-melting of juvenile proto-continental crust"

description: Supplementary datasets for the recently accepted paper in <em>Communications Earth & Environment </em> <strong>"The largest plagiogranite on Earth formed by re-melting of juvenile proto-continental crust"</strong>