cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/cc106zw2
title: CCDC 930244: Experimental Crystal Structure Determination

description: Related Article: Wei-Hui Fang, Guo-Yu Yang|2014|CrystEngComm|16|1885|doi:10.1039/C3CE42224K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc106zz5
title: CCDC 930247: Experimental Crystal Structure Determination

description: Related Article: Hendrik Herrmann, Alexandra Ziesak, Ute Wild, Simone Leingang, David Schrempp, Norbert Wagner, Johannes Beck, Elisabeth Kaifer, Hubert Wadepohl, Hans-Jörg Himmel|2014|ChemPhysChem|15|351|doi:10.1002/cphc.201300862
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc106zv1
title: CCDC 930243: Experimental Crystal Structure Determination

description: Related Article: Wei-Hui Fang, Guo-Yu Yang|2014|CrystEngComm|16|1885|doi:10.1039/C3CE42224K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc1075p3
title: CCDC 930424: Experimental Crystal Structure Determination

description: Related Article: Fernanda M. Ribeiro Laia, Clara S.B. Gomes, Teresa M.V.D. Pinho e Melo|2013|Tetrahedron|69|10098|doi:10.1016/j.tet.2013.09.050
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc10793n
title: CCDC 930530: Experimental Crystal Structure Determination

description: Related Article: Ielyzaveta Bratko, Gregorio Guisado-Barrios, Isabelle Favier, Sonia Mallet-Ladeira, Emmanuelle Teuma, Eduardo Peris, Montserrat Gómez|2014|Eur.J.Org.Chem.|2014|2160|doi:10.1002/ejoc.201301220
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc1079h1
title: CCDC 930542: Experimental Crystal Structure Determination

description: Related Article: Nataliya E. Borisova, Andrey Kostin, Tatiana V. Magdesieva, Marina D. Reshetova, Oleg Nikitin, Verónica Paredes-García, M. Teresa Garland, Patricio Hermosilla-Ibáñez, Walter Cañon-Mancisidor, Alexey Rodionov, Diego Venegas-Yazigi, Evgenia Spodine|2014|New J.Chem.|38|709|doi:10.1039/C3NJ00722G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc107hxn
title: CCDC 930741: Experimental Crystal Structure Determination

description: Related Article: Shah Jaimin Balkrishna, Shailesh Kumar, Gajendra Kumar Azad, Bhagat Singh Bhakuni, Piyush Panini, Navjeet Ahalawat, Raghuvir Singh Tomar, Michael R. Detty, Sangit Kumar|2014|Org.Biomol.Chem.|12|1215|doi:10.1039/C4OB00027G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc107hyp
title: CCDC 930742: Experimental Crystal Structure Determination

description: Related Article: Shah Jaimin Balkrishna, Shailesh Kumar, Gajendra Kumar Azad, Bhagat Singh Bhakuni, Piyush Panini, Navjeet Ahalawat, Raghuvir Singh Tomar, Michael R. Detty, Sangit Kumar|2014|Org.Biomol.Chem.|12|1215|doi:10.1039/C4OB00027G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc107z07
title: CCDC 931178: Experimental Crystal Structure Determination

description: Related Article: Sangram S. Kale, Shrikant M. Kunjir, Rupesh L. Gawade, Vedavati G. Puranik, P. R. Rajamohanan, Gangadhar J. Sanjayan|2014|Chem.Commun.|50|2886|doi:10.1039/C3CC48850K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc107yz5
title: CCDC 931177: Experimental Crystal Structure Determination

description: Related Article: Sangram S. Kale, Shrikant M. Kunjir, Rupesh L. Gawade, Vedavati G. Puranik, P. R. Rajamohanan, Gangadhar J. Sanjayan|2014|Chem.Commun.|50|2886|doi:10.1039/C3CC48850K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc108jb4
title: CCDC 931715: Experimental Crystal Structure Determination

description: Related Article: Telma F. S. Silva, Luísa M. D. R. S. Martins, M. Fátima C. Guedes da Silva, Maxim L. Kuznetsov, Alexandra R. Fernandes, Ana Silva, Chun-Jern Pan, Jyh-Fu Lee, Bing-Joe Hwang, Armando J. L. Pombeiro|2014|Chem.Asian J.|9|1132|doi:10.1002/asia.201301331
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.zk9k9p
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tamias sibiricus",
 "HasCoordinate is true",
 "Country is Poland"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000811-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc108j93
title: CCDC 931714: Experimental Crystal Structure Determination

description: Related Article: Telma F. S. Silva, Luísa M. D. R. S. Martins, M. Fátima C. Guedes da Silva, Maxim L. Kuznetsov, Alexandra R. Fernandes, Ana Silva, Chun-Jern Pan, Jyh-Fu Lee, Bing-Joe Hwang, Armando J. L. Pombeiro|2014|Chem.Asian J.|9|1132|doi:10.1002/asia.201301331
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc108p54
title: CCDC 931865: Experimental Crystal Structure Determination

description: Related Article: Soundararasu Senthilkumar, Sure Siva Prasad, Ponminor Senthil Kumar, Sundarababu Baskaran|2014|Chem.Commun.|50|1549|doi:10.1039/C3CC48370C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc108p32
title: CCDC 931863: Experimental Crystal Structure Determination

description: Related Article: Soundararasu Senthilkumar, Sure Siva Prasad, Ponminor Senthil Kumar, Sundarababu Baskaran|2014|Chem.Commun.|50|1549|doi:10.1039/C3CC48370C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc108p43
title: CCDC 931864: Experimental Crystal Structure Determination

description: Related Article: Soundararasu Senthilkumar, Sure Siva Prasad, Ponminor Senthil Kumar, Sundarababu Baskaran|2014|Chem.Commun.|50|1549|doi:10.1039/C3CC48370C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc108l3z
title: CCDC 931770: Experimental Crystal Structure Determination

description: Related Article: Hongrui Zhang, Haifeng Li, Jijun Xue, Rui Chen, Ying Li, Yu Tang, Chunxin Li|2014|Org.Biomol.Chem.|12|732|doi:10.1039/C3OB42183J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.t7t863
title: Occurrence Download

description: A dataset containing 16758 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Castanopsis"
 ]
}

 The dataset includes 16758 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032549-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t5nspv
title: Occurrence Download

description: A dataset containing 304 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paraserianthes falcataria"
 ]
}

 The dataset includes 304 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032551-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9cfsz
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Medicago lupulina",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 99 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032554-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9jdp3s
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((128.2642507983219 26.768013337077416,128.31309864854975 26.768013337077416,128.31309864854975 26.81686118730526,128.2642507983219 26.81686118730526,128.2642507983219 26.768013337077416))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gallirallus okinawae"
 ]
}

 The dataset includes 73 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032555-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.52famu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eleusine indica",
 "Country is Kuwait",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032553-250717081556266/datasets/export for details.
DOI: 10.5281/zenodo.16354342
title: Predicting Bird Community Recovery with Acoustic Indices - data and code

description: Predicting Bird Community Recovery with Acoustic Indices

This repository contains the data and scripts for the manuscript:  "Acoustic indices predict taxonomic, functional, and phylogenetic recovery of bird communities in tropical forest restoration."

Manuscript Summary

Quantifying ecosystem restoration success is a priority of the UN Decade on Ecosystem Restoration.  In this study, we tested whether acoustic indices can effectively predict bird community recovery in abandoned agricultural areas within a biodiversity hotspot in Ecuador.

Using extensive sound recordings from lowland tropical forests, we:



Identified 334 bird species through expert annotation and AI-based recognition.

Calculated standard acoustic indices from the recordings.

Analyzed community composition using Hill numbers and accounting for incomplete sampling.

Evaluated predictions of taxonomic, functional and phylogenetic diversity based on acoustic indices.


Key Findings

- Acoustic indices predicted validated species data with R² values between 0.59 and 0.76.- Taxonomic recovery was best predicted for common and dominant species.- Functional and phylogenetic recovery was best predicted for both rare and common species.- A small set of validated acoustic indices can serve as an efficient tool to monitor large-scale tropical restoration, including recovery of functionally rare bird species.
DOI: 10.5281/zenodo.16354341
title: Predicting Bird Community Recovery with Acoustic Indices - data and code

description: Predicting Bird Community Recovery with Acoustic Indices

This repository contains the data and scripts for the manuscript:  "Acoustic indices predict taxonomic, functional, and phylogenetic recovery of bird communities in tropical forest restoration."

Manuscript Summary

Quantifying ecosystem restoration success is a priority of the UN Decade on Ecosystem Restoration.  In this study, we tested whether acoustic indices can effectively predict bird community recovery in abandoned agricultural areas within a biodiversity hotspot in Ecuador.

Using extensive sound recordings from lowland tropical forests, we:



Identified 334 bird species through expert annotation and AI-based recognition.

Calculated standard acoustic indices from the recordings.

Analyzed community composition using Hill numbers and accounting for incomplete sampling.

Evaluated predictions of taxonomic, functional and phylogenetic diversity based on acoustic indices.


Key Findings

- Acoustic indices predicted validated species data with R² values between 0.59 and 0.76.- Taxonomic recovery was best predicted for common and dominant species.- Functional and phylogenetic recovery was best predicted for both rare and common species.- A small set of validated acoustic indices can serve as an efficient tool to monitor large-scale tropical restoration, including recovery of functionally rare bird species.
DOI: 10.15468/dl.5fqzuk
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sisymbrium officinale",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 70 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032556-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13869323
title: Quantum Behavior of Multiple Monomeric Arrays of Spins 1/2

description: Description

Raw ASCII data for single-crystal and powder EPR spectra of the Cu(II) coordination compound with L-methionine, Cu(L-met)$_2$, presented in the work "Quantum Behavior of Multiple Monomeric Arrays of Spins 1/2" by Vinicius T Santana, Rosana P Sartoris and Rafael Calvo.

Files *.dat contain the raw powder spectra data directly from the spectrometer, with 21 headerlines as metadata. The relevant columns for plotting the spectra are columns 1 (Field_exp) and 3 (X_ch). A narrow peak around g ~1.9-2.0 corresponds to a standard (MgO:Cr(III)) for magnetic field calibration. This narrow peak (~2mT) must be used to fix the magnetic field column such as that this peak shifts to the field corresponding to g=1.9797 for the frequency used to obtain the spectrum. ($g=h\nu/(\mu_B B$), where $h$ is the Planck constant and $\mu_B$ is the Bohr magneton)

The raw spectra have mostly the correct phase. If that is not the case, the phase can be corrected to provide an absorption shape by using the following function in MATLAB, or an equivalent code in any other software:

function M = correct_phase(spec,phase)Mx = imag(hilbert(spec));    % Hilbert transformMy = spec;M = Mx*sin(phase*pi/180)+My*cos(phase*pi/180); end

Files *.csv contain the raw single-crystal data organized in files according to the conditions (frequency and temperature) in the file name. Each pair of columns contains the magnetic field and spectrum of one orientation of the sample in the magnetic field for those conditions. 

A MATLAB script using Easyspin[1] version 6.0.5 for simulating the angular dependence of the resonance fields for two rotated sites in a single crystal is included; the script also calculates the resonance fields in the case the condition for the entangled phase is fulfilled. Additionally, a script for simulating the powder spectra with 70k orientations in the solid angle of a sphere is provided together with the orientations file and example at 425 GHz.

Acknowledgment 

This work was supported by the Czech Science Foundation (GAČR), grant number 24-11928M.

Reference

[1] Stefan Stoll, Arthur Schweiger. EasySpin, a comprehensive software package for spectral simulation and analysis in EPR. J. Magn. Reson. 178(1), 42-55 (2006). Website: www.easyspin.org
DOI: 10.5281/zenodo.13869324
title: Quantum Behavior of Multiple Monomeric Arrays of Spins 1/2

description: Description

Raw ASCII data for single-crystal and powder EPR spectra of the Cu(II) coordination compound with L-methionine, Cu(L-met)$_2$, presented in the work "Quantum Behavior of Multiple Monomeric Arrays of Spins 1/2" by Vinicius T Santana, Rosana P Sartoris and Rafael Calvo.

Files *.dat contain the raw powder spectra data directly from the spectrometer, with 21 headerlines as metadata. The relevant columns for plotting the spectra are columns 1 (Field_exp) and 3 (X_ch). A narrow peak around g ~1.9-2.0 corresponds to a standard (MgO:Cr(III)) for magnetic field calibration. This narrow peak (~2mT) must be used to fix the magnetic field column such as that this peak shifts to the field corresponding to g=1.9797 for the frequency used to obtain the spectrum. ($g=h\nu/(\mu_B B$), where $h$ is the Planck constant and $\mu_B$ is the Bohr magneton)

The raw spectra have mostly the correct phase. If that is not the case, the phase can be corrected to provide an absorption shape by using the following function in MATLAB, or an equivalent code in any other software:

function M = correct_phase(spec,phase)Mx = imag(hilbert(spec));    % Hilbert transformMy = spec;M = Mx*sin(phase*pi/180)+My*cos(phase*pi/180); end

Files *.csv contain the raw single-crystal data organized in files according to the conditions (frequency and temperature) in the file name. Each pair of columns contains the magnetic field and spectrum of one orientation of the sample in the magnetic field for those conditions. 

A MATLAB script using Easyspin[1] version 6.0.5 for simulating the angular dependence of the resonance fields for two rotated sites in a single crystal is included; the script also calculates the resonance fields in the case the condition for the entangled phase is fulfilled. Additionally, a script for simulating the powder spectra with 70k orientations in the solid angle of a sphere is provided together with the orientations file and example at 425 GHz.

Acknowledgment 

This work was supported by the Czech Science Foundation (GAČR), grant number 24-11928M.

Reference

[1] Stefan Stoll, Arthur Schweiger. EasySpin, a comprehensive software package for spectral simulation and analysis in EPR. J. Magn. Reson. 178(1), 42-55 (2006). Website: www.easyspin.org
DOI: 10.15468/dl.y86nn6
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sisymbrium officinale",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 33 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032557-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z66jfw
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Medicago lupulina",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 82 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032559-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xacxaf
title: Occurrence Download

description: A dataset containing 195 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cliffortia nitidula",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 195 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032561-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.