cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1235484.08fu
title: SH1235484.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1235485.08fu
title: SH1235485.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/th035291
title: TH035291
title: Metaurostylopsis

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th035292
title: TH035292
title: Anteholosticha

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th035293
title: TH035293
title: Holosticha

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.25549/one-c4-12282
title: ONE confidential 12/9 (1967-09)

description: ONE confidential, volume 12, number 9 (1967 September). Issued monthly.
DOI: 10.15156/bio/sh1235486.08fu
title: SH1235486.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1235487.08fu
title: SH1235487.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/th035294
title: TH035294
title: Neourostylopsis

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th035295
title: TH035295
title: Apoholosticha

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.5281/zenodo.17037230
title: AFM Image Dataset: Synthetic and Real, Labeled and Unlabeled

description: This dataset contains grayscale PNG images of bacterial and geometric shapes acquired using Atomic Force Microscopy (AFM), as well as procedurally generated synthetic images for machine learning applications in detection and segmentation.

Real AFM images were collected using the **DriveAFM system (Nanosurf)** equipped with **Multi75 probes**, under standard tapping mode conditions. The samples include both **bacterial morphologies** (bacillus and coccus) and **geometric test shapes**, and are provided in labeled and unlabeled formats.

Synthetic datasets were generated to mimic realistic AFM topography using domain-specific simulators, incorporating noise, tip convolution, shape variation, and texture. The synthetic labeled images include pixel-level annotations compatible with COCO and YOLO formats.

The dataset is structured into multiple folders:- `synthetic_labeled/` — synthetic images with segmentation masks- `real_labeled/` — real AFM images with manual annotations- `real_unlabeled/` — real images without labels

All files are grayscale `.png` images, 8-bit depth. Annotations (when present) are included in `.json` format. These datasets can be used for training, validation, benchmarking, and domain adaptation in AFM image analysis tasks.

This dataset was used in the publication:

> **[Insert title of the article]**  > DOI: [Insert article DOI]

Please cite the above article when using this dataset.

**License**: Creative Commons Attribution 4.0 International (CC BY 4.0)  **Author**: Ruben Millan-Solsona  **Version**: 1.0  **Date**: August 2025
DOI: 10.5281/zenodo.17037229
title: AFM Image Dataset: Synthetic and Real, Labeled and Unlabeled

description: This dataset contains grayscale PNG images of bacterial and geometric shapes acquired using Atomic Force Microscopy (AFM), as well as procedurally generated synthetic images for machine learning applications in detection and segmentation.

Real AFM images were collected using the **DriveAFM system (Nanosurf)** equipped with **Multi75 probes**, under standard tapping mode conditions. The samples include both **bacterial morphologies** (bacillus and coccus) and **geometric test shapes**, and are provided in labeled and unlabeled formats.

Synthetic datasets were generated to mimic realistic AFM topography using domain-specific simulators, incorporating noise, tip convolution, shape variation, and texture. The synthetic labeled images include pixel-level annotations compatible with COCO and YOLO formats.

The dataset is structured into multiple folders:- `synthetic_labeled/` — synthetic images with segmentation masks- `real_labeled/` — real AFM images with manual annotations- `real_unlabeled/` — real images without labels

All files are grayscale `.png` images, 8-bit depth. Annotations (when present) are included in `.json` format. These datasets can be used for training, validation, benchmarking, and domain adaptation in AFM image analysis tasks.

This dataset was used in the publication:

> **[Insert title of the article]**  > DOI: [Insert article DOI]

Please cite the above article when using this dataset.

**License**: Creative Commons Attribution 4.0 International (CC BY 4.0)  **Author**: Ruben Millan-Solsona  **Version**: 1.0  **Date**: August 2025
DOI: 10.15468/dl.quuzxc
title: Occurrence Download

description: A dataset containing 673814 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Danaus plexippus"
 ]
}

 The dataset includes 673814 records from 178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019226-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9pbsm
title: Occurrence Download

description: A dataset containing 15438 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viola betonicifolia"
 ]
}

 The dataset includes 15438 records from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019267-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/e1xk-2r37
title: "AdaptCDR"

description: "Transferring Cancer Drug Response Prediction through Multi-Label Heuristic Domain Adaptation"
DOI: 10.15468/dl.9uv98b
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Calappa bilineata"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019269-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4jxdq
title: Occurrence Download

description: A dataset containing 1347 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Human Observation, Specimen, Occurrence evidence)",
 "MediaType is Image",
 "TaxonKey is Embioptera"
 ]
}

 The dataset includes 1347 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019270-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jg7hkp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scolymus maculatus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019271-250827131500795/datasets/export for details.
DOI: 10.5281/zenodo.17037392
title: corpus of chu ... qi in Chu Sanzang Jiji(出三藏记集)
DOI: 10.5281/zenodo.17037393
title: corpus of chu ... qi in Chu Sanzang Jiji(出三藏记集)
DOI: 10.15468/dl.m5avqf
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tragopogon mirus"
 ]
}

 The dataset includes 161 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019272-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zqurry
title: Occurrence Download

description: A dataset containing 79369 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Carex limosa"
 ]
}

 The dataset includes 79369 records from 544 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019188-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15754235
title: TET knockout cells transit between pluripotent states and exhibit precocious germline entry - source data

description: TET1, TET2 and TET3 are DNA demethylases with critical roles in development and differentiation. To assess the contributions of TET proteins to cell function during early development, single and compound knockouts of Tet genes in mouse pluripotent embryonic stem cells (ESCs) were generated. Here we show that TET proteins are not required to transit between naïve, formative and primed pluripotency. Moreover, ESCs with double-knockouts of Tet1 and Tet2 or triple-knockouts of Tet1, Tet2 and Tet3 are phenotypically indistinguishable. These TET-deficient ESCs exhibit differentiation defects; they fail to activate somatic gene expression and retain expression of pluripotency transcription factors. Therefore, TET1 and TET2, but not TET3 act redundantly to facilitate somatic differentiation. Importantly however, TET-deficient ESCs can differentiate into primordial germ cell-like cells (PGCLCs), and do so at high efficiency in the presence or absence of PGC-promoting cytokines. Moreover, acquisition of a PGCLC transcriptional programme occurs more rapidly in TET-deficient cells. These results establish that TET proteins act at the juncture between somatic and germline fates: without TET proteins, epiblast cell differentiation defaults to the germline.
DOI: 10.5281/zenodo.17037372
title: TET knockout cells transit between pluripotent states and exhibit precocious germline entry - source data

description: TET1, TET2 and TET3 are DNA demethylases with critical roles in development and differentiation. To assess the contributions of TET proteins to cell function during early development, single and compound knockouts of Tet genes in mouse pluripotent embryonic stem cells (ESCs) were generated. Here we show that TET proteins are not required to transit between naïve, formative and primed pluripotency. Moreover, ESCs with double-knockouts of Tet1 and Tet2 or triple-knockouts of Tet1, Tet2 and Tet3 are phenotypically indistinguishable. These TET-deficient ESCs exhibit differentiation defects; they fail to activate somatic gene expression and retain expression of pluripotency transcription factors. Therefore, TET1 and TET2, but not TET3 act redundantly to facilitate somatic differentiation. Importantly however, TET-deficient ESCs can differentiate into primordial germ cell-like cells (PGCLCs), and do so at high efficiency in the presence or absence of PGC-promoting cytokines. Moreover, acquisition of a PGCLC transcriptional programme occurs more rapidly in TET-deficient cells. These results establish that TET proteins act at the juncture between somatic and germline fates: without TET proteins, epiblast cell differentiation defaults to the germline.
DOI: 10.25574/24069
title: Chandra X-ray Observatory ObsId 24069

description: Flows of hot Baryons in the Milky Way center: How are fountains & chimneys linked to the Galactic-scale outflow?
DOI: 10.3886/e237191v2
title: A Study of the Mechanism of Influence of High Performance Work Systems on Employees' Perceived Employability

description: 本研究调查了高绩效工作系统 （HPWS） 如何影响员工的就业能力感知，重点关注职业承诺的中介作用以及认知和情感信任的调节作用。利用工作需求-资源模型，我们假设 HPWS 通过职业承诺提高感知的就业能力，信任维度塑造了这种关系。使用结构方程模型分析了来自中国 626 名会计专业人士的数据。结果证实，HPWS 对感知的就业能力产生积极影响，这完全由职业承诺中介。认知信任放大了 HPWS 与职业承诺的联系，而情感信任没有表现出显着的调节作用。这些发现凸显了技能增强实践和合理建立信任在 HPWS 实施中的重要性，以培养员工在动态劳动力市场中的适应能力。该研究通过将信任动态整合到 HPWS 结果中来推进理论理解，并为组织优化人力资源战略提供实用的见解。局限性包括横断面数据和特定行业的抽样，建议未来进行纵向和多部门研究以推广研究结果。
DOI: 10.35097/p7m6pdtrak3jwjf7
title: Doppler lidar measurements from Villingen-Schwenningen, Swabian MOSES 2023, Level 0 netCDF files

description: Original Doppler lidar measurements from the Doppler lidar Lockheed Martin WindTracer WTX located at Villingen-Schwenningen, Germany (48.0563°N, 8.487°E) during the Swabian MOSES 2023 field campaign from June to August 2023. A system signal failure occurred between 10th and 14th June 2023.
description: Lockheed Martin WindTracer WTX
DOI: 10.15468/dl.hc9px5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Afrixalus aureus, Afrixalus delicatus, Afrixalus fornasini, Afrixalus knysnae, Afrixalus spinifrons, Amietia delalandii, Amietia fuscigula, Amietia hymenopus, Amietia poyntoni, Amietia vandijki, Amietia vertebralis, Anhydrophryne hewitti, Anhydrophryne ngongoniensis, Anhydrophryne rattrayi, Arthroleptella atermina, Arthroleptella bicolor, Arthroleptella draconella, Arthroleptella drewesii, Arthroleptella kogelbergensis, Arthroleptella landdrosia, Arthroleptella lightfooti, Arthroleptella rugosa, Arthroleptella subvoce, Arthroleptella villiersi, Arthroleptis stenodactylus, Arthroleptis wageri, Arthroleptis wahlbergii, Breviceps acutirostris, Breviceps adspersus, Breviceps bagginsi, Breviceps branchi, Breviceps carruthersi, Breviceps fuscus, Breviceps gibbosus, Breviceps macrops, Breviceps montanus, Breviceps mossambicus, Breviceps namaquensis, Breviceps passmorei, Breviceps pentheri, Breviceps rosei, Breviceps sopranus, Breviceps sylvestris, Breviceps verrucosus, Cacosternum aggestum, Cacosternum australis, Cacosternum boettgeri, Cacosternum capense, Cacosternum karooicum, Cacosternum namaquense, Cacosternum nanogularum, Cacosternum nanum, Cacosternum parvum, Cacosternum platys, Cacosternum rhythmum, Cacosternum striatum, Cacosternum thorini, Capensibufo deceptus, Capensibufo magistratus, Capensibufo rosei, Capensibufo selenophos, Capensibufo tradouwi, Chiromantis xerampelina, Hadromophryne natalensis, Heleophryne depressa, Heleophryne hewitti, Heleophryne orientalis, Heleophryne purcelli, Heleophryne regis, Heleophryne rosei, Hemisus guineensis, Hemisus guttatus, Hemisus marmoratus, Hildebrandtia ornata, Hyperolius argus, Hyperolius horstockii, Hyperolius marmoratus, Hyperolius pickersgilli, Hyperolius poweri, Hyperolius pusillus, Hyperolius semidiscus, Hyperolius tuberilinguis, Kassina senegalensis, Leptopelis mossambicus, Leptopelis natalensis, Leptopelis xenodactylus, Microbatrachella capensis, Natalobatrachus bonebergi, Phlyctimantis maculatus, Phrynobatrachus acridoides, Phrynobatrachus mababiensis, Phrynobatrachus natalensis, Phrynomantis annectens, Phrynomantis bifasciatus, Poyntonia paludicola, Poyntonophrynus fenoulheti, Poyntonophrynus vertebralis, Ptychadena anchietae, Ptychadena mossambica, Ptychadena nilotica)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.529 -24.0715,20.509 -24.0455,20.509 -24.0715,20.529 -24.0715))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019274-250827131500795/datasets/export for details.
DOI: 10.15468/dl.rvzr93
title: Occurrence Download

description: A dataset containing 4811 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Physodermataceae"
 ]
}

 The dataset includes 4811 records from 142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019276-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uk7qvh
title: Occurrence Download

description: A dataset containing 56298 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is FUEL - Herbário da Universidade Estadual de Londrina"
 ]
}

 The dataset includes 56298 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019259-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16914530
title: Data for "Extending MPAS-NoahMP Model Capability beyond Weather Timescale: Assessing Land-Atmosphere Interactions for Future Subseasonal-to-Seasonal Applications"

description: Data for "Extending MPAS-NoahMP Model Capability beyond Weather Timescale: Assessing Land-Atmosphere Interactions for Future Subseasonal-to-Seasonal Applications"

 

The MPAS-NoahMP model output are regridded from the native unstructure mesh to regular lat-lon grid, matching ERA5 resolution at 0.25 deg (721 x 1440). 

Available variables include: t2m (2-m temperature, annual and seasonal), prec (daily precipitation rate, annual and seasonal), snow cover fraction, latent heat flux (W/m2, JJA), and surface soil moisture (m3/m3, JJA). Other model output variables are available upon requests. 

 

Contact: zhezhang@ucar.edu