cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/4nevfe
title: DFO Maritimes Biofouling Monitoring Program

description: Fisheries and Oceans Canada’s (DFO) National Biofouling Monitoring Program (BMP) has conducted annual field surveys to monitor the introduction, establishment, spread, species richness, and relative abundance of native and non-indigenous species (NIS) since 2006. Standardized monitoring protocols employed by DFO-Maritimes, -Gulf, and -Quebec Regions include biofouling collector plates deployed from May to October at intertidal and shallow subtidal, geo-referenced sites, including public and private docks, aquaculture lease sites, public and private marinas and yacht clubs.
Initially in the Maritimes Region (2006-2017) collectors consisted of 3, 10 cm by 10cm PVC plates deployed in a vertical array and spaced approximately 40-cm apart with the shallowest plate hung at least 1 m below the surface to sample shallow subtidal and intertidal species (Sephton et al. 2011, 2017). Two replicate arrays were deployed at least 5 m apart per site. Since 2018, collector arrays were modified to enhance statistical replication, including 10 individual collectors deployed per site at 1 m depth and at least 5 m apart (as above) from May to October. The percent cover of AIS on all collectors was determined by visual examination and scored as follows; (i) ‘0’ = absent, (ii) ‘1’ = ≤25 % cover, (iii) ‘2’ = 25 to ≤50 %, (iv) ‘3’ = 50–75% , and (v) ‘4’ = &gt;75%. Average percent cover is provided for all NIS observed annually per site. Presence-absence indicates that an NIS was observed on at least one collector plate.
One additional rocky intertidal species (Asian shore crab; Hemigrapsus sanguineus) was assessed via beach surveys as permitted by time and resources following its initial siting in St Mary’s Bay (Nova Scotia) in April 2020. Rapid assessment surveys conducted in the Fall of 2020 and 2021 were employed to delineate H. sanguineus’ distribution and relative abundance. Areas deemed suitable and at high risk for spread were targeted, including exposed rocky intertidal habitat in southwest regions of Nova Scotia and New Brunswick. Each rapid assessment consisted of 30-minute beach surveys per site conducted by 2 or 3 people (modified from Stephenson et al. 2011). During each survey, crabs were collected under rocks and seaweed in preferred cobble/boulder habitat (Lohrer et al. 2000). Count data was standardized for each site as the number of crabs collected per 30-min search per person.
DOI: 10.15468/dl.q2jv27
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia esula Forssk., 1775"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041727-241126133413365/datasets/export for details.
DOI: 10.15468/dl.vfg75n
title: Occurrence Download

description: A dataset containing 400964 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acridotheres javanicus Cabanis, 1851"
 ]
}

 The dataset includes 400964 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041709-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qrhk9b
title: Occurrence Download

description: A dataset containing 13620 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera leo (Linnaeus, 1758)"
 ]
}

 The dataset includes 13620 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041728-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqaecn
title: Occurrence Download

description: A dataset containing 274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myxine glutinosa Linnaeus, 1758",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 274 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041730-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.4769659.v1
title: Measured pressure-elevation trajectories of bag top and bottom from Wave energy absorption by a submerged air bag connected to a rigid float

description: Measured pressure-elevation trajectories of bag top and bottom
DOI: 10.15468/dl.tdgf3f
title: Occurrence Download

description: A dataset containing 1820 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Material sample)",
 "Country is one of (Japan, Russian Federation, Korea, Republic of, China, Korea (Democratic People’s Republic of))",
 "Geometry POLYGON((123.00424 29.82455,173.41652 29.82455,173.41652 62.96996,123.00424 62.96996,123.00424 29.82455))",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Abies sachalinensis (F.Schmidt) Mast., Abies holophylla Maxim., Abies nephrolepis (Trautv. ex Maxim.) Maxim.)"
 ]
}

 The dataset includes 1820 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010725-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11105645
title: Chapter 3 - A highly-dynamic East Antarctic Ice Sheet during the Miocene: A multi-proxy sedimentary provenance approach using in-situ 87Rb/87Sr dating of detrital K-feldspar in ODP Site 1165, Prydz Bay
DOI: 10.5281/zenodo.11105644
title: Chapter 3 - A highly-dynamic East Antarctic Ice Sheet during the Miocene: A multi-proxy sedimentary provenance approach using in-situ 87Rb/87Sr dating of detrital K-feldspar in ODP Site 1165, Prydz Bay
DOI: 10.5281/zenodo.14526363
title: Chapter 3 - A highly-dynamic East Antarctic Ice Sheet during the Miocene: A multi-proxy sedimentary provenance approach using in-situ 87Rb/87Sr dating of detrital K-feldspar in ODP Site 1165, Prydz Bay
DOI: 10.15468/dl.gbq4q2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia esula Ten."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041731-241126133413365/datasets/export for details.
DOI: 10.15468/dl.ct72se
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nannobrachium regale (Gilbert, 1892)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041733-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tdqtgj
title: Occurrence Download

description: A dataset containing 11764 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Anas crecca Linnaeus, 1758"
 ]
}

 The dataset includes 11764 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041732-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e197966
title: Code for: Smart Thermostats, Automation, and Time-Varying Prices

description: This deposit contains the code required to reproduce the results presented in "Smart Thermostats, Automation, and Time-Varying Prices" by Blonz, Palmer, Wichman, and Wietelman. The analysis relies on confidential data, which we are not able to provide here.
description: Households with Ecobee smart thermostats in Ontario.
DOI: 10.57754/fdat.m1bve-dc065
title: Aspect use in indirect speech

description: This experiment tests the aspect function of ipf past and pf past in indirect speech.
Sentence picture selection with RTs.
An indirect speech is given; two event pictures appear on the screen with the event as ongoing or completed;
conditions: Sentences with subordinated verb in present, past IPF or past PF; question of simultaneity, overlapping or anterior time reference.
16 Itemsentences, 36 fillers; 52 picture pairs; 4 lists.
sentence-picture selection with reaction time measuring
description: Research carried out in work package C02 of the SFB 833.
DOI: 10.15468/dl.fyeesv
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nansenia candida Cohen, 1958",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041737-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7a4fbp
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (INSDC Sequences, Naturalis Biodiversity Center (NL) - Amphibia and Reptilia, International Barcode of Life project (iBOL), Observation.org, Nature data from around the World, Xeno-canto - Anura sounds from around the world, Fonoteca Zoológica, Museo Nacional de Ciencias Naturales, Madrid: FZ_AMPHIBIA, iNaturalist Research-grade Observations)",
 "TaxonKey is Alytes dickhilleni Arntzen & García-París, 1995"
 ]
}

 The dataset includes 249 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041736-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ksxs7j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia esula Kotschy"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041738-241126133413365/datasets/export for details.
DOI: 10.5281/zenodo.14525542
title: A Resource for Quantifying Biological Pattern Intricacies

description: This repository provides source code, data, and analyses supporting the paper "Quantifying the Intricacies of Biological Pattern Formation." The materials cover a comprehensive exploration of pattern complexity in various reaction-diffusion models, including the FitzHugh-Nagumo, Gray-Scott, and gene regulatory network (GRN) models. The files encompass simulations, complexity quantifications, and stability analyses, emphasizing the Diversity of Number of States (DNOS) and Diversity of Pattern Complexity (DPC) measures.

Supplementary Material Overview

This repository contains source code, data, and results supporting the analysis of biological pattern formation across various reaction-diffusion models. The focus is on quantifying complexity using the Diversity of Number of States (DNOS) and Diversity of Pattern Complexity (DPC) measures.





Reaction-Diffusion Simulations



Includes simulations for FitzHugh-Nagumo, Gray-Scott, and general Turing models, providing insights into spatiotemporal pattern formation and stability conditions.

Explores bistability, tristability, and the effects of 2D diffusion and self-interaction in toggle switch and gene regulatory network (GRN) models.





Complexity Analysis



Jupyter notebooks for classifying and quantifying complexity in generated patterns.

Evaluates DNOS and DPC metrics to analyze pattern diversity and formation dynamics.





Stability Analysis



Code for conducting linear stability analysis of Turing models, identifying conditions for pattern formation via eigenvalue analysis.





Notch-Mediated Lateral Inhibition



Simulations and analyses of Notch signaling pathways in Drosophila neurogenesis.

Combines data processing and visualization to explore complexity measures in gene regulatory network models.





Visualization Tools



Scripts and notebooks for visualizing the complete parameter spaces of GRNs, toggle switches, and reaction-diffusion systems.

Generates figures to illustrate complexity metrics and pattern formation dynamics.





Data Organization



Results, data, and code are categorized by specific models and analyses, facilitating reproducibility and exploration of the complexity space in biological systems.
DOI: 10.5281/zenodo.14525543
title: A Resource for Quantifying Biological Pattern Intricacies

description: This repository provides source code, data, and analyses supporting the paper "Quantifying the Intricacies of Biological Pattern Formation." The materials cover a comprehensive exploration of pattern complexity in various reaction-diffusion models, including the FitzHugh-Nagumo, Gray-Scott, and gene regulatory network (GRN) models. The files encompass simulations, complexity quantifications, and stability analyses, emphasizing the Diversity of Number of States (DNOS) and Diversity of Pattern Complexity (DPC) measures.

Supplementary Material Overview

This repository contains source code, data, and results supporting the analysis of biological pattern formation across various reaction-diffusion models. The focus is on quantifying complexity using the Diversity of Number of States (DNOS) and Diversity of Pattern Complexity (DPC) measures.





Reaction-Diffusion Simulations



Includes simulations for FitzHugh-Nagumo, Gray-Scott, and general Turing models, providing insights into spatiotemporal pattern formation and stability conditions.

Explores bistability, tristability, and the effects of 2D diffusion and self-interaction in toggle switch and gene regulatory network (GRN) models.





Complexity Analysis



Jupyter notebooks for classifying and quantifying complexity in generated patterns.

Evaluates DNOS and DPC metrics to analyze pattern diversity and formation dynamics.





Stability Analysis



Code for conducting linear stability analysis of Turing models, identifying conditions for pattern formation via eigenvalue analysis.





Notch-Mediated Lateral Inhibition



Simulations and analyses of Notch signaling pathways in Drosophila neurogenesis.

Combines data processing and visualization to explore complexity measures in gene regulatory network models.





Visualization Tools



Scripts and notebooks for visualizing the complete parameter spaces of GRNs, toggle switches, and reaction-diffusion systems.

Generates figures to illustrate complexity metrics and pattern formation dynamics.





Data Organization



Results, data, and code are categorized by specific models and analyses, facilitating reproducibility and exploration of the complexity space in biological systems.
DOI: 10.34622/datarepositorium/arr42z
title: “Sempre em Nós”: entrevista a Evalina Gomes Dias

description: Vídeo de entrevista a Evalina Gomes Dias no âmbito do projeto MigraMediaActs
DOI: 10.57754/fdat.kbfcp-2t885
title: Time reference and aspect use in indirect speech

description: This experiment tests the influence of time reference on aspect use in indirect speech.</cmdp:Description>
Rating study; 5 = acceptable .... 1 = not acceptable;
 
16 Target sentences, 36 Filler sentences;

condition: wide and narrow time reference; imperfective and perfective aspect; imperfective present and past; 
2x3 conditions;

6 Itemlists;
narrow:в понедельник...на прошлой неделе  wide:в понедельник...в прошлом году
description: Research carried out in work package C02 of the SFB 833.
DOI: 10.15468/dl.rps3nm
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nansenia groenlandica (Reinhardt, 1840)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 21 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041740-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q4nds5
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia esula × salicifolia"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041741-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjssav
title: Occurrence Download

description: A dataset containing 31736 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyphantria cunea (Drury, 1773)"
 ]
}

 The dataset includes 31736 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041739-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1948096025
title: Immobilization of Th(IV) in Yttrium Stabilized Zirconia Ceramics

description: Safe disposal of nuclear waste requires matrix materials with strong resistance against corrosion and dissolution over a period of more than 10E6 years. Zirconium based ceramics might be used as storage material, because their natural analogues zircon, ZrSiO4, and zirconia, ZrO2, are known to remain stable in geological cycles up to approximately 2·10E9 years. We intend to investigate the structural substitution of thorium in Y-stabilized ZrO2 ceramics. Th(IV) is selected for this study because it represents the typical oxidation state IV which appear in Pu, U and Th containing nuclear waste. The aim of this study is to determine to what extend Th(IV) can be introduced into zirconium ceramics without Zr/Th phase separation.
DOI: 10.6084/m9.figshare.c.3917344_d2.v1
title: Additional file 11: Figure S7. of Sequence-based prediction of permissive stretches for internal protein tagging and knockdown

description: PSS-identified permissive stretches are enriched to be surface accessible. Each plot summarizes the predicted surface accessibility and the predicted secondary structure of each residue for all test proteins (upper panel within each plot) as well as relative surface accessibility and secondary structure calculated from available crystal structures by the DSSP algorithm (lower panel within each plot). (a) Adk, (b) Bla, (c) TpiA, (f) AtpA, (g) AtpD, and (h) GpsA. PSs are highlighted in grey. The RSA of a site is defined as the geometric mean of the RSAs of its flanking residues, while the RSA of a predicted stretch is defined as the maximum site RSA in the stretch. RSAs of stretches derived from predictions and crystal structures are summarised in Additional file 10: Table S4. For illustration, identified permissive stretches were mapped onto the surface representation of the crystal structures of TEM1 β-lactamase (PDB 1AXB) (d), TpiA (shown as dimer, PDB 1TRE) (e), and the F1 part of ATP synthase (PDB 3OAA) (i). α-subunits (AtpA) are shown in light green, β-subunits are shown in dark green, and the γ-subunit is shown in yellow. PSs are marked in grey. For permissive site numbering refer to Additional file 3: Figure S1; Additional file 4: Figure S2, and Additional file 9: Figure S6. For TpiA and Bla, two different orientations are displayed to capture all PSs. Note that PSVIII within TpiA is not surface exposed and therefore not visible. PSI and PSVII within AtpA are not resolved in the crystal structure and therefore not given. (ZIP 13 kb)
DOI: 10.6084/m9.figshare.c.3917326_d2.v1
title: Additional file 2: of Meiotic crossovers are associated with open chromatin and enriched with Stowaway transposons in potato

description: Table S1. PCR primers designed to detect heterozygous deletions on chromosome 1 in US-W4. Table S2. PCR-based genotypes across chromosome 1. Table S3. PCR primers for sanger sequencing of crossovers. Table S4. Multinomial goodness of fit for crossover counts at each chromosome based on fit to Poisson distribution. Table S5. Monte Carlo simulation for the association of crossover breakpoints at various genomic regions. Table S6. Gene ontology enrichment for crossovers against all potato genes. Table S7. Spearmanâ  s correlation coefficient (rho) for 100 kb windows across all 12 potato chromosomes. Table S8. Enrichment of DNase-seq and H3K4me3 reads in crossover-associated genic features relative to nearby simulated regions. Table S9. Fisherâ  s Exact Test between the count of fine-scale crossovers (n=756) and matched cold regions (n=756) containing different repeat classes. Table S10. Generalized linear model of crossover counts per 100 kb using genomic and chromatin features. Table S11. Generalized linear model of crossover counts per 10 kb using genomic and chromatin feature. (PDF 6763 kb)
DOI: 10.15151/esrf-es-1941851195
title: Revealing the altermagnetic phase of α-Fe2O3 by angular-dependent in-field Mössbauer spectroscopy on single crystals

description: Recent theory and experimental investigations reveal the presence of a new magnetic phase called altermagnets. Altermagnets possess features that are normal characteristics of either antiferromagnets or ferromagnets and retain fascinating properties like high even-parity wave magnetism, generally associated with unconventional superconductivity. Within this proposal, we want to investigate the predicted altermagnetic phase in α-Fe2O3 utilising nuclear forward scattering. We expect that by our experimental protocol, we will have a spectroscopic tool to investigate altermagnetic materials with Mössbauer active isotopes. In addition, investigating high even-parity wave magnetism might help further understand the connection between unconventional superconductivity and magnetism.
DOI: 10.6084/m9.figshare.c.3917326_d2
title: Additional file 2: of Meiotic crossovers are associated with open chromatin and enriched with Stowaway transposons in potato

description: Table S1. PCR primers designed to detect heterozygous deletions on chromosome 1 in US-W4. Table S2. PCR-based genotypes across chromosome 1. Table S3. PCR primers for sanger sequencing of crossovers. Table S4. Multinomial goodness of fit for crossover counts at each chromosome based on fit to Poisson distribution. Table S5. Monte Carlo simulation for the association of crossover breakpoints at various genomic regions. Table S6. Gene ontology enrichment for crossovers against all potato genes. Table S7. Spearmanâ  s correlation coefficient (rho) for 100 kb windows across all 12 potato chromosomes. Table S8. Enrichment of DNase-seq and H3K4me3 reads in crossover-associated genic features relative to nearby simulated regions. Table S9. Fisherâ  s Exact Test between the count of fine-scale crossovers (n=756) and matched cold regions (n=756) containing different repeat classes. Table S10. Generalized linear model of crossover counts per 100 kb using genomic and chromatin features. Table S11. Generalized linear model of crossover counts per 10 kb using genomic and chromatin feature. (PDF 6763 kb)