cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12271568.v1
title: mercury6_input.tar.gz

description: Input for MERCURY6 dynamical integrations. <br>
DOI: 10.6084/m9.figshare.12271529.v1
title: CIRCOS data for differentially classified sample FBC013587

description: Data used to generate the circos plots in Figure 3
DOI: 10.6084/m9.figshare.12271265
title: Supplementary Material for: Efficacy and Safety of Regional Anticoagulation with 4% Trisodium Citrate Versus Heparin in Extended Hemodialysis among Critical Patients with Cancer and Acute Kidney Injury

description: <b><i>Introduction:</i></b> Patients with cancer admitted to critical care units are at increased risk of being affected with acute kidney injury (AKI) and mortality. Sustained low-efficiency dialysis (SLED) combines the cardiovascular stability of continuous therapy with the operational facility of conventional hemodialysis (HD). Citrate has become an alternative to heparin in anticoagulation because it favors the maintenance of filter patency and reduces bleeding. We analyzed the efficacy and safety of citrate versus heparin use in extended HD for patients with cancer and AKI. <b><i>Methods:</i></b> This retrospective cohort study evaluated patients with cancer and dialytic AKI who received SLED with anticoagulation using citrate versus heparin from January 2014 to June 2017. After stratifying patients by the type of anticoagulation received, we evaluated demographic and clinical data, plus SLED session characteristics. We also analyzed dialysis outcomes, including insufficient session time, hypotension, poor catheter flow, line inversion, and dialysis system coagulation. <b><i>Results:</i></b> We identified 423 SLED sessions among 124 patients (41 patients in the heparin group and 83 patients in the citrate group). More sessions with citrate (26.6 vs. 40.9%, <i>p</i> &lt; 0.001) had serum platelet concentrations &lt;50,000/mm<sup>3</sup> or &lt;100,000/m<sup>3</sup> and ionic calcium (Ca<sup>++</sup>) values &lt;1.16 mmol/L (33.2 vs. 18.5%, <i>p</i> &lt; 0.001). Dialysis intercurrence occurred in 27% of sessions. The highest odds were associated with heparin sessions (OR 2.88). Compared with the citrate group, the heparin group was subject to more dialysis system coagulation (12.3%), the need for line reversal (9.8%), and insufficient session time (23.9%). <b><i>Conclusion:</i></b> Citrate represents a safe and effective anticoagulant for SLED for cancer patients with AKI undergoing treatment in the intensive care unit.
DOI: 10.6084/m9.figshare.12271292.v1
title: Arrival catalog of coronal mass ejections observed with STEREO Heliospheric Imagers (HELCATS ARRCAT 2.0)

description: ARRIVAL CATALOGUE 2.0 <br>In this ARRival CATalog (ARRCAT), the arrivals of solar coronal mass ejections as tracked in the STEREO heliospheric imagers are calculated. This was a part of the EU HELCATS project, but is now continously updated. It lists predicted arrivals of CMEs at various spacecraft and planets, between April 2007 - April 2020, based on the HIGeoCAT catalog of CMEs established at RAL Space, UK (R. A. Harrison, J. A. Davies, D. Barnes). <br>This is version 2.0, released 2020-05-12. DOI: 10.6084/m9.figshare.12271292<br><br>For further description, see header file.<br>source code: arrcat.ipynb in https://github.com/cmoestl/heliocats<br><br>
DOI: 10.17608/k6.auckland.12271022
title: test-test

description: test
DOI: 10.17608/k6.auckland.12271022.v1
title: test-test

description: test
DOI: 10.6084/m9.figshare.12271292.v2
title: Arrival catalog of coronal mass ejections observed with STEREO Heliospheric Imagers (HELCATS ARRCAT 2.0)

description: ARRIVAL CATALOGUE 2.0 <br><pre>In this ARRival CATalog (ARRCAT), the arrivals of solar coronal mass ejections that were tracked in the STEREO heliospheric imagers in the HELCATS project are calculated.</pre><pre><br></pre><pre>ARRCAT lists modeled arrivals of CMEs at various spacecraft and planets, between April 2007 - April 2020, based on the HIGeoCAT catalog of CMEs established at RAL Space, UK (R. A. Harrison, J. A. Davies, D. Barnes). This is version 2.0, released 2020-05-13. </pre><pre><br></pre><pre>https://doi.org/10.6084/m9.figshare.12271292 It is based on this HIGeoCAT version: https://www.helcats-fp7.eu/catalogues/data/HCME_WP3_V06.vot using the SSEF30 model. The catalog is available as python pandas dataframe (pickle), python numpy arrays (pickle, as recarray and structured array),npy (numpy, no pickle), json, csv, xlsx, txt, hdf5, html at </pre><pre>https://helioforecast.space/arrcat</pre><pre>https://www.helcats-fp7.eu Number of events in ARRCAT: 1548 Targets: Earth_L1, STEREO-A, STEREO-B, Solar Orbiter, Parker Solar Probe (PSP), Bepi Colombo, Ulysses, Venus, Mercury, Mars.</pre><br>For further description, see header file.<br>source code: arrcat.ipynb in https://github.com/cmoestl/heliocats<br><br>
DOI: 10.6084/m9.figshare.12271292.v3
title: Arrival catalog of coronal mass ejections observed with STEREO Heliospheric Imagers (HELCATS ARRCAT 2.0)

description: ARRIVAL CATALOGUE 2.0 <br>In this ARRival CATalog (ARRCAT), the arrivals of solar coronal mass ejections that were tracked in the STEREO heliospheric imagers in the HELCATS project are calculated.<br>ARRCAT lists modeled arrivals of CMEs at various spacecraft and planets, between April 2007 - April 2020, based on the HIGeoCAT catalog of CMEs established at RAL Space, UK (R. A. Harrison, J. A. Davies, D. Barnes). <br>This is version 2.0, released 2020-05-13. <br>https://doi.org/10.6084/m9.figshare.12271292<br>It is based on this HIGeoCAT version: https://www.helcats-fp7.eu/catalogues/data/HCME_WP3_V06.vot using the SSEF30 model.<br>The catalog is available as python pandas dataframe (pickle), python numpy arrays (pickle, as recarray and structured array),npy (numpy, no pickle), json, csv, xlsx, txt, hdf5, html at https://helioforecast.space/arrcathttps://www.helcats-fp7.eu<br>Number of events in ARRCAT: 1548Targets: Earth_L1, STEREO-A, STEREO-B, Solar Orbiter, Parker Solar Probe (PSP), Bepi Colombo, Ulysses, Venus, Mercury, Mars.<br>For further description, see header file.<br>source code: arrcat.ipynb inhttps://github.com/cmoestl/heliocats<br>
DOI: 10.6084/m9.figshare.12270665
title: Additional file 2 of Drosophila melanogaster chemical ecology revisited: 2-D distribution maps of sex pheromones on whole virgin and mated flies by mass spectrometry imaging

description: Additional file 2. Supplementary data D. melanogaster female body parts GC-MS analysis.
DOI: 10.6084/m9.figshare.12270665.v1
title: Additional file 2 of Drosophila melanogaster chemical ecology revisited: 2-D distribution maps of sex pheromones on whole virgin and mated flies by mass spectrometry imaging

description: Additional file 2. Supplementary data D. melanogaster female body parts GC-MS analysis.
DOI: 10.6084/m9.figshare.12271292.v4
title: Arrival catalog of coronal mass ejections observed with STEREO Heliospheric Imagers (HELCATS ARRCAT 2.0)

description: ARRIVAL CATALOGUE 2.0 <br>In this ARRival CATalog (ARRCAT), the arrivals of solar coronal mass ejections that were tracked in the STEREO heliospheric imagers in the HELCATS project are calculated.<br>ARRCAT lists modeled arrivals of CMEs at various spacecraft and planets, between April 2007 - April 2020, based on the HIGeoCAT catalog of CMEs established at RAL Space, UK (R. A. Harrison, J. A. Davies, D. Barnes). <br>This is version 2.0, released 2020-05-13. <br>https://doi.org/10.6084/m9.figshare.12271292<br>It is based on this HIGeoCAT version: https://www.helcats-fp7.eu/catalogues/data/HCME_WP3_V06.vot using the SSEF30 model.<br>The catalog is available as python pandas dataframe (pickle), python numpy arrays (pickle, as recarray and structured array),npy (numpy, no pickle), json, csv, xlsx, txt, hdf5, html at https://helioforecast.space/arrcathttps://www.helcats-fp7.eu<br>Number of events in ARRCAT: 1548Targets: Earth_L1, STEREO-A, STEREO-B, Solar Orbiter, Parker Solar Probe (PSP), Bepi Colombo, Ulysses, Venus, Mercury, Mars.<br>For further description, see header file.<br>source code: arrcat.ipynb inhttps://github.com/cmoestl/heliocats<br>
DOI: 10.6084/m9.figshare.12271292.v5
title: Arrival catalog of coronal mass ejections observed with STEREO Heliospheric Imagers (HELCATS ARRCAT 2.0)

description: ARRIVAL CATALOGUE 2.0 <br>In this ARRival CATalog (ARRCAT), the arrivals of solar coronal mass ejections that were tracked in the STEREO heliospheric imagers in the HELCATS project are calculated.<br>ARRCAT lists modeled arrivals of CMEs at various spacecraft and planets, between April 2007 - April 2020, based on the HIGeoCAT catalog of CMEs established at RAL Space, UK (R. A. Harrison, J. A. Davies, D. Barnes). <br>This is version 2.0, released 2020-05-13. <br>https://doi.org/10.6084/m9.figshare.12271292<br>It is based on this HIGeoCAT version: https://www.helcats-fp7.eu/catalogues/data/HCME_WP3_V06.vot using the SSEF30 model.<br>The catalog is available as python pandas dataframe (pickle), python numpy arrays (pickle, as recarray and structured array),npy (numpy, no pickle), json, csv, xlsx, txt, hdf5, html at https://helioforecast.space/arrcathttps://www.helcats-fp7.eu<br>Number of events in ARRCAT: 1548Targets: Earth_L1, STEREO-A, STEREO-B, Solar Orbiter, Parker Solar Probe (PSP), Bepi Colombo, Ulysses, Venus, Mercury, Mars.<br>For further description, see header file.<br>source code: arrcat.ipynb inhttps://github.com/cmoestl/heliocats<br>
DOI: 10.6084/m9.figshare.12271292.v6
title: Arrival catalog of coronal mass ejections observed with STEREO Heliospheric Imagers (HELCATS ARRCAT 2.0)

description: ARRIVAL CATALOGUE 2.0 <br>In this ARRival CATalog (ARRCAT), the arrivals of solar coronal mass ejections that were tracked in the STEREO heliospheric imagers in the HELCATS project are calculated.<br>ARRCAT lists modeled arrivals of CMEs at various spacecraft and planets, between April 2007 - April 2020, based on the HIGeoCAT catalog of CMEs established at RAL Space, UK (R. A. Harrison, J. A. Davies, D. Barnes). <br>This is version 2.0, released 2020-05-13. <br>https://doi.org/10.6084/m9.figshare.12271292<br>It is based on this HIGeoCAT version: https://www.helcats-fp7.eu/catalogues/data/HCME_WP3_V06.vot using the SSEF30 model.<br>The catalog is available as python pandas dataframe (pickle), python numpy arrays (pickle, as recarray and structured array),npy (numpy, no pickle), json, csv, xlsx, txt, hdf5, html at https://helioforecast.space/arrcathttps://www.helcats-fp7.eu<br>Number of events in ARRCAT: 1548Targets: Earth_L1, STEREO-A, STEREO-B, Solar Orbiter, Parker Solar Probe (PSP), Bepi Colombo, Ulysses, Venus, Mercury, Mars.<br>For further description, see header file.<br>source code: arrcat.ipynb inhttps://github.com/cmoestl/heliocats<br>Rules: If results are produced with this catalog for peer-reviewed scientific publications,please contact christian.moestl@oeaw.ac.at for co-authorships.<br>
DOI: 10.6084/m9.figshare.12271292.v7
title: Arrival catalog of coronal mass ejections observed with STEREO Heliospheric Imagers (HELCATS ARRCAT 2.0)

description: ARRIVAL CATALOGUE 2.0 <br>In this ARRival CATalog (ARRCAT), the arrivals of solar coronal mass ejections that were tracked in the STEREO heliospheric imagers in the HELCATS project are calculated.<br>ARRCAT lists modeled arrivals of CMEs at various spacecraft and planets, between April 2007 - April 2020, based on the HIGeoCAT catalog of CMEs established at RAL Space, UK (R. A. Harrison, J. A. Davies, D. Barnes). <br>This is version 2.0, released 2020-05-13, updated 2020-06-05.<br>https://doi.org/10.6084/m9.figshare.12271292<br>It is based on this HIGeoCAT version: https://www.helcats-fp7.eu/catalogues/data/HCME_WP3_V06.vot using the SSEF30 model.<br>The catalog is available as python pandas dataframe (pickle), python numpy arrays (pickle, as recarray and structured array),npy (numpy, no pickle), json, csv, xlsx, txt, hdf5, html at https://helioforecast.space/arrcathttps://www.helcats-fp7.eu<br>Number of events in ARRCAT: 1554Targets: Earth_L1, STEREO-A, STEREO-B, Solar Orbiter, Parker Solar Probe (PSP), Bepi Colombo, Ulysses, Venus, Mercury, Mars.<br>For further description, see header file.<br>source code: arrcat.ipynb inhttps://github.com/cmoestl/heliocats<br>Rules: If results are produced with this catalog for peer-reviewed scientific publications,please contact christian.moestl@oeaw.ac.at for co-authorships.<br>
DOI: 10.6084/m9.figshare.12270533
title: Additional file 4 of The tapeworm interactome: inferring confidence scored protein-protein interactions from the proteome of Hymenolepis microstoma

description: Additional file 4 Hm_net annotations. Tab-delimited Hm_net annotation dataset suitable for use with Cytoscape and other network viewers.
DOI: 10.6084/m9.figshare.12270533.v1
title: Additional file 4 of The tapeworm interactome: inferring confidence scored protein-protein interactions from the proteome of Hymenolepis microstoma

description: Additional file 4 Hm_net annotations. Tab-delimited Hm_net annotation dataset suitable for use with Cytoscape and other network viewers.
DOI: 10.6084/m9.figshare.12270527
title: Additional file 3 of The tapeworm interactome: inferring confidence scored protein-protein interactions from the proteome of Hymenolepis microstoma

description: Additional file 3 Hm_HC_net: Tab-delimited Hm_HC_net dataset suitable for use with Cytoscape and other network viewers.
DOI: 10.6084/m9.figshare.12270518
title: Additional file 2 of The tapeworm interactome: inferring confidence scored protein-protein interactions from the proteome of Hymenolepis microstoma

description: Additional file 2 Hm_net: Tab-delimited Hm_net dataset suitable for use with Cytoscape and other network viewers.
DOI: 10.6084/m9.figshare.12270518.v1
title: Additional file 2 of The tapeworm interactome: inferring confidence scored protein-protein interactions from the proteome of Hymenolepis microstoma

description: Additional file 2 Hm_net: Tab-delimited Hm_net dataset suitable for use with Cytoscape and other network viewers.
DOI: 10.6084/m9.figshare.12270527.v1
title: Additional file 3 of The tapeworm interactome: inferring confidence scored protein-protein interactions from the proteome of Hymenolepis microstoma

description: Additional file 3 Hm_HC_net: Tab-delimited Hm_HC_net dataset suitable for use with Cytoscape and other network viewers.
DOI: 10.6084/m9.figshare.12270512
title: Additional file 1 of The absence of the drhm gene is not a marker for human-pathogenicity in European Anaplasma phagocytophilum strains

description: Additional file 1: Table S1. Reference, host species, ST, CC, MLST cluster, allele numbers, ankA gene cluster, drhm status, APH_0919/APH_0922 status, country of origin, year of sampling, disease state of the host and GenBank accession numbers for the 686 A. phagocytophilum strains.
DOI: 10.6084/m9.figshare.12270512.v1
title: Additional file 1 of The absence of the drhm gene is not a marker for human-pathogenicity in European Anaplasma phagocytophilum strains

description: Additional file 1: Table S1. Reference, host species, ST, CC, MLST cluster, allele numbers, ankA gene cluster, drhm status, APH_0919/APH_0922 status, country of origin, year of sampling, disease state of the host and GenBank accession numbers for the 686 A. phagocytophilum strains.
DOI: 10.6084/m9.figshare.12270500
title: Additional file 1 of Malaria in Venezuela: changes in the complexity of infection reflects the increment in transmission intensity

description: Additional file 1: Table S1. (A) Complete list of P. falciparum Pfk13 gene sequences available in databases. The codons associated with artemisinin resistance located at the propeller domain are shown. Venezuelan complete sequences (N=65) are labelled in purple. In this study, only the complete sequences were used for the analyses. (B) The mutation found in the Venezuelan samples and the other countries where these mutations were also found.
DOI: 10.6084/m9.figshare.12270500.v1
title: Additional file 1 of Malaria in Venezuela: changes in the complexity of infection reflects the increment in transmission intensity

description: Additional file 1: Table S1. (A) Complete list of P. falciparum Pfk13 gene sequences available in databases. The codons associated with artemisinin resistance located at the propeller domain are shown. Venezuelan complete sequences (N=65) are labelled in purple. In this study, only the complete sequences were used for the analyses. (B) The mutation found in the Venezuelan samples and the other countries where these mutations were also found.
DOI: 10.6084/m9.figshare.12270464
title: Additional file 1 of Rats as potential reservoirs for neglected zoonotic Bartonella species in Flanders, Belgium

description: Additional file 1: Table S1. PCR results for Bartonella spp. and trapping number with coordinates of trapping sites (N, North; E, East) per collected rodent, Belgium, 2015–2016.
DOI: 10.6084/m9.figshare.12270467
title: Additional file 4 of A coarse-graining, ultrametric approach to resolve the phylogeny of prokaryotic strains with frequent homologous recombination

description: Additional file 4 Zipped folder containing the sequences and trees in the analyses: sequences of the simulated genomes in different test-groups, their true trees and also the phylogenetic trees reconstructed by different algorithms; sequences of the E. coli genomes, their trees reconstructed by different algorithms for the GLOOME-test, and also their time measurements; sequences of the E. coli genomes, the list of strains and genes in each test group, and their trees reconstructed by different algorithms for the tree-pair-test; genes to orthologous gene families map provided by ProteinORTHO.
DOI: 10.6084/m9.figshare.12270455
title: Additional file 2 of A coarse-graining, ultrametric approach to resolve the phylogeny of prokaryotic strains with frequent homologous recombination

description: Additional file 2 Analyses of the real genomes in the GLOOME-test: b-number of the E. coli core genes used to make the ‘super-gene’ sequences, strains in each test-group, and also the GLOOME posterior likelihood (GPL) of the reconstructed trees.
DOI: 10.6084/m9.figshare.12270464.v1
title: Additional file 1 of Rats as potential reservoirs for neglected zoonotic Bartonella species in Flanders, Belgium

description: Additional file 1: Table S1. PCR results for Bartonella spp. and trapping number with coordinates of trapping sites (N, North; E, East) per collected rodent, Belgium, 2015–2016.
DOI: 10.6084/m9.figshare.12270467.v1
title: Additional file 4 of A coarse-graining, ultrametric approach to resolve the phylogeny of prokaryotic strains with frequent homologous recombination

description: Additional file 4 Zipped folder containing the sequences and trees in the analyses: sequences of the simulated genomes in different test-groups, their true trees and also the phylogenetic trees reconstructed by different algorithms; sequences of the E. coli genomes, their trees reconstructed by different algorithms for the GLOOME-test, and also their time measurements; sequences of the E. coli genomes, the list of strains and genes in each test group, and their trees reconstructed by different algorithms for the tree-pair-test; genes to orthologous gene families map provided by ProteinORTHO.
DOI: 10.6084/m9.figshare.12270455.v1
title: Additional file 2 of A coarse-graining, ultrametric approach to resolve the phylogeny of prokaryotic strains with frequent homologous recombination

description: Additional file 2 Analyses of the real genomes in the GLOOME-test: b-number of the E. coli core genes used to make the ‘super-gene’ sequences, strains in each test-group, and also the GLOOME posterior likelihood (GPL) of the reconstructed trees.
DOI: 10.6084/m9.figshare.12270461
title: Additional file 3 of A coarse-graining, ultrametric approach to resolve the phylogeny of prokaryotic strains with frequent homologous recombination

description: Additional file 3. Analyses of the real genomes in the tree-pair-test: the unrooted symmetric distance, the unrooted branch score distance, and the rooted branch score distance between the pair of reconstructed trees in each test group.
DOI: 10.6084/m9.figshare.12270449
title: Additional file 1 of A coarse-graining, ultrametric approach to resolve the phylogeny of prokaryotic strains with frequent homologous recombination

description: Additional file 1. Analyses of the simulated genomes: the symmetric distance (SD) and branch score distance (BSD) between the reconstructed trees and the true trees.
DOI: 10.6084/m9.figshare.12270449.v1
title: Additional file 1 of A coarse-graining, ultrametric approach to resolve the phylogeny of prokaryotic strains with frequent homologous recombination

description: Additional file 1. Analyses of the simulated genomes: the symmetric distance (SD) and branch score distance (BSD) between the reconstructed trees and the true trees.
DOI: 10.6084/m9.figshare.12270461.v1
title: Additional file 3 of A coarse-graining, ultrametric approach to resolve the phylogeny of prokaryotic strains with frequent homologous recombination

description: Additional file 3. Analyses of the real genomes in the tree-pair-test: the unrooted symmetric distance, the unrooted branch score distance, and the rooted branch score distance between the pair of reconstructed trees in each test group.
DOI: 10.6084/m9.figshare.12270404
title: Additional file 2 of The effects of combination treatments on drug resistance in chronic myeloid leukaemia: an evaluation of the tyrosine kinase inhibitors axitinib and asciminib

description: Additional file 2 Comma separated values (csv) file of the complete averaged IC~50$\widetilde { ext {IC}}_{50}$ dataset.
DOI: 10.6084/m9.figshare.12270398
title: Additional file 1 of Longitudinal atherosclerotic changes after radio(chemo)therapy of hypopharyngeal carcinoma

description: Additional file 1. Data analysed.
DOI: 10.6084/m9.figshare.12270404.v1
title: Additional file 2 of The effects of combination treatments on drug resistance in chronic myeloid leukaemia: an evaluation of the tyrosine kinase inhibitors axitinib and asciminib

description: Additional file 2 Comma separated values (csv) file of the complete averaged IC~50$\widetilde { ext {IC}}_{50}$ dataset.
DOI: 10.6084/m9.figshare.12270398.v1
title: Additional file 1 of Longitudinal atherosclerotic changes after radio(chemo)therapy of hypopharyngeal carcinoma

description: Additional file 1. Data analysed.
DOI: 10.6084/m9.figshare.12270392
title: Additional file 1 of Microbial symbiosis and coevolution of an entire clade of ancient vertebrates: the gut microbiota of sea turtles and its relationship to their phylogenetic history

description: Additional file 1: Table S1. Sequencing results for all sea turtle species in this investigation
DOI: 10.6084/m9.figshare.12270392.v1
title: Additional file 1 of Microbial symbiosis and coevolution of an entire clade of ancient vertebrates: the gut microbiota of sea turtles and its relationship to their phylogenetic history

description: Additional file 1: Table S1. Sequencing results for all sea turtle species in this investigation
DOI: 10.6084/m9.figshare.12270371
title: Additional file 6 of Gut eukaryotic communities in pigs: diversity, composition and host genetics contribution

description: Additional file 6 Table S5. Metabolic pathways significantly enriched by the list of candidate genes.
DOI: 10.6084/m9.figshare.12270380
title: Additional file 8 of Gut eukaryotic communities in pigs: diversity, composition and host genetics contribution

description: Additional file 8 Table S6. Description of the ingredients and nutrient content of the diets used during the experiment.
DOI: 10.6084/m9.figshare.12270368
title: Additional file 2 of Identifying novel associations in GWAS by hierarchical Bayesian latent variable detection of differentially misclassified phenotypes

description: Additional file 2. P-values of GWAS for original and PheLEx corrected UK Biobank bipolar disorder and epilepsy phenotypes. We provide p-values from GWAS of original bipolar disorder phenotype, PheLEx corrected bipolar disorder phenotype, original epilepsy phenotype, and PheLEx corrected epilepsy phenotype.