cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.58119/ulg/qjj0sa/nnaqmd
title: 01Plautus_Plautus_Amphitruo_PlAmphi.APN

description: :unav
DOI: 10.57745/mb6rrl
title: VariancePartitionBloodTranscriptomics.R

description: R script for the analysis of variance applied to whole blood transcriptomic response across the three considered timepoints and four considered groups.
DOI: 10.57745/czkrbc
title: rna_cyat_Day0_DESeq2.R

description: R script for the analysis of whole blood transcriptomic response associated to cyathostomin infection on day0. This is with the DESeq2 package.
DOI: 10.58119/ulg/qjj0sa/bepbbm
title: Cicero_PhilippicaOratio_CicPhi13.APN

description: :unav
DOI: 10.57745/xifg3n
title: meta_trial.tab

description: Metadata associated with the trial.
DOI: 10.58119/ulg/qjj0sa/wnlkxx
title: 31SenTragoediae_Seneca_Thyestes_SenThyes.APN

description: :unav
DOI: 10.58119/ulg/qjj0sa/bkzqcx
title: 37DeSenectute_Cicero_DeSenectute_CicSenec.APN

description: :unav
DOI: 10.5066/f7hh6j1s
title: Remotely sensed variables analyzed and reported in the paper titled &amp;amp;amp;quot;Multi-year data from satellite- and ground-based sensors show details and scale matter in assessing climate&amp;amp;amp;rsquo;s effects on wetland surface water, amphibians, and landscape conditions&amp;amp;amp;quot;

description: The comma-delimited fields in this dataset provide values for the remotely sensed variables analyzed for landscape blocks described in the paper, "Multi-year data from satellite- and ground-based sensors show details and scale matter in assessing climate’s effects on wetland surface water, amphibians, and landscape conditions," by Sadinski et al. (submitted). The field labeled “BlockSite” links the records in this file with a set of boundaries in a shapefile called “Study_Block_Boundaries.shp” The records represent weekly measurements of normalized difference vegetation index (BlockNDVI) values and total evapotranspiration (BlockETmm), as well as the annual snow-off date (BlockDOYsnowfree) for the study blocks from January through [...]
DOI: 10.25345/c5pz51x4q
title: MassIVE MSV000092982 - Exosome Proteomics in Obesity-Related Insulin Resistance
title: In this study serum exosomes from 4 male subjects with obesity and insulin resistance and lean/overweight insulin-sensitive men were used for proteomics analysis.
DOI: 10.57745/4etuxv
title: lib.info

description: RNAseq sample names
DOI: 10.7910/dvn/wqashi
title: Replication Data for: “Fact-Checking” Fact-Checkers: A Data-Driven Approach

description: Replication Data for: “Fact-Checking” Fact-Checkers: A Data-Driven Approach
DOI: 10.58119/ulg/qjj0sa/ffiiem
title: 25SenLuc75a99_Seneca_AdLuciliumEpistulaeMorales_SenEpist75a99.APN

description: :unav
DOI: 10.57745/wyqxcu
title: Valdes-Correcher_et_al_2021_DATA.tab

description: Original data analysed in the article entitled "Following the track: accuracy and reproducibility of predation assessment on artificial caterpillars" Variable description: * Response_ID: a single ID for each response to any of the online quizes * Respondant: was the respondant a professional scientist, a teacher, a student * Expertise: Self declared previous expertise in predation rate assessments wioth artificial larvae * Quizz: Quiz ID (1, 2, 3) * Language: quiz language (french, English, Spanish, german) * Picture: Picture ID (1 to 20, in each quiz) * Answer: respondant's identification of marks on caterpillar surface * ID: Picture ID, combining columns 'Quizz' and 'Picture' * Expert_answer: Correct predation mark idenitficatiàon as made by an expert, to be compared with respondant's identification ('Answer')
DOI: 10.58119/ulg/qjj0sa/g2l1m0
title: 30SenTractatus_Seneca_DeVitaBeata_SenVitBe.APN

description: :unav
DOI: 10.57745/eobyqd
title: final_2019xp_groups.tab

description: Metadata for RNAseq analysis
DOI: 10.58119/ulg/qjj0sa/wi4tkn
title: 09HorCarm_Horatius_Carmina_HorCarm3.APN

description: :unav
DOI: 10.57745/5k3jle
title: 16S_rRNA_metadata_Cyathomix.tab

description: Metadata of samples used for the 16S rRNA amplicon sequencing
DOI: 10.5066/f7jd4v0k
title: Determine the effect of Parasite-S (formalin), administered to control mortality from saprolegniasis, on the nitrogen oxidation efficiency of the biofilters of recirculating aquaculture systems (RAS) for freshwater finfish � Laboratory Studies

description: This dataset includes laboratory data collected to determine the effects of formaldehyde on nitrification processes in biofilters of recirculating aquaculture systems (RAS). Data from the laboratory studies were used to inform methods used to conduct field trials in a pilot and commercial-scale RAS. Biofilter nitrification was monitored by measuring the levels of total ammonia nitrogen, nitrite, and nitrate in experimental aquaria containing a small biofilter before and after formaldehyde was applied to the test system.
DOI: 10.58119/ulg/qjj0sa/mrra7y
title: 39Suetonius_Suetonius_VitaeCaesarum_SueVC06.APN

description: :unav
DOI: 10.6084/m9.figshare.23674614
title: Developing potential drugs for <em>insomnia</em> through computational analysis

description: This data contains docking scores, receptor - ligand interaction(jpeg), Pharmacokinetic and toxicological profiles of compounds related to zolpidem, Suvorexant, Ramelteone and Triazolam.
DOI: 10.5066/f7jh3k38
title: Using Pharyngeal Teeth and Chewing Pads to Predict Juvenile Silver Carp Total Length in the La Grange Reach, Illinois River: Data

description: ilver carp (Hypophthalmichthys molitrix) are an invasive species in the Mississippi River Basin; understanding their vulnerability to predation as juveniles may inform control by native predators and predator stocking. Digestion of silver carp recovered from diets makes it difficult to determine the size classes most vulnerable to predation by native fishes. The objective of this study was to determine if total length of silver carp can be predicted from the size of their chewing pad, pharyngeal teeth, and pharyngeal arch, the structures most often found intact in diets. Juvenile silver carp (n=136: &amp;amp;lt;180 mm) were collected using 60 hz pulsed- DC electrofishing and mini fyke nets in 2014 and 2015 from the La Grange Reach of the Illinois River. We dissected silver carp chewing pads (n= 136 fish) and pharyngeal teeth (n=127 fish) and measured chewing pad length and width, eight reproducible pharyngeal teeth landmarks, and four reproducible pharyngeal arch landmarks to the nearest 0.01 mm. Using simple linear regression we found that there is a strong predictive relationship between chewing pad, pharyngeal teeth, pharyngeal arch measurements and total length of silver carp. Chewing pad length and width were stronger predictors of silver carp length (r2= 0.94) than pharyngeal teeth (r2= 0.87), but both structures can be used to estimate silver carp total length.
DOI: 10.5066/f7jw8c4x
title: Reed Canary Grass

description: Aerial photographs for Pools 2-13 Upper Mississippi River System were collected in color infrared (CIR) in August of 2010 at 8�/pixel and 16�/pixel respectively using a mapping-grade Applanix DSS 439 digital aerial camera. All CIR aerial photos were orthorectified, mosaicked, compressed, and served via the UMESC Internet site. The CIR aerial photos were interpreted and automated using a 31-class LTRM vegetation classification. The 2010 LCU databases were prepared by or under the supervision of competent and trained professional staff using documented standard operated procedures and are subject to rigorous quality control (QC) assurances (NBS, 1995). The 2010/2011 land cover/land use spatial data sets for pools 2 - 13 were combined into one data set for this updated product and only wet meadow and wet meadow shrub polygons were retained. The aerial images underlying these polygons were visually re-interpreted to ascertain if &amp;gt;80% of the polygon was dominated by Phalaris arundinacea (Reed canarygrass). Polygons were then attributed with information categorizing them accordingly.
DOI: 10.5066/f7k07351
title: Lake Erie Aquatic Vegetation data

description: Observations and subtle shifts of vegetation communities in western Lake Erie have USGS researchers concerned about the potential for Grass Carp to alter these vegetation communities. Broad-scale surveys of vegetation using remote sensing and GIS mapping, coupled with on-the-ground samples in key locations will permit assessment of the effect Grass Carp may have already had on aquatic vegetation communities and establish baseline conditions for assessing future effects. Existing aerial imagery was used with object-based image analysis to detect and map aquatic vegetation in the western basin of Lake Erie.
DOI: 10.57745/9y9wh6
title: RNA_metadata_cyathomix.tab

description: :unav
DOI: 10.58119/ulg/qjj0sa/enpwzo
title: Plautus_Aulularia_PlAulul.APN

description: :unav
DOI: 10.57745/0duslx
title: ITS2_metadata_cyathomix.tab

description: Metadata of samples used for the ITS2 and COI amplicon sequencing
DOI: 10.5066/f7k073g2
title: Determine the behavior and spatial distribution of bigheaded carp in response to seismic water guns: Data

description: This dataset includes exported hydroacoustic data (i.e., coordinates for acoustically detected fish targets, mean target strength of detected fish). The distance (m) from the water guns for each fish target was calculated using the gps coordinates of fish targets and the water guns� location. The total lengths of fish targets were estimated from their target strength (dB), and fish were then classified as native fish or bigheaded carp according to their total length. This dataset was used to examine the efficacy of water guns to alter bigheaded carp behavior via analyses on fish abundance, spatial and size distribution of fish, and the effective water gun range. Each worksheet tab is labeled with the survey date and time, as well the water gun treatment (i.e., control, off, on).
DOI: 10.58119/ulg/qjj0sa/auv6hf
title: 15Suetonius_VitaeCaesarum_SueVC10.APN

description: :unav
DOI: 10.58119/ulg/qjj0sa/bg6zac
title: 17Livius_Livius_AbVrbeCondita_TLiv09.APN

description: :unav
DOI: 10.5066/f7k35rs7
title: Evaluation of avoidance behavior of tadpole madtoms (Noturus gyrinus) as a surrogate to the endangered northern madtom (Noturus stigmosus) in response to granular Bayluscide&amp;amp;amp;reg;

description: The objective of this study was to document the vertical avoidance behavior of the tadpole madtom, as a surrogate to the northern madtom, in response to granular Bayluscide&amp;amp;amp;reg; when applied to control or assess larval sea lamprey populations. The data set consists of one hour recordings of the avoidance behavior of tadpole madtoms after exposure to granular Bayluscide. Each trial (replicated 15 times) consisted of three treated (Bayluscide granules) and three control (washed sand only) clear Plexiglas vertical columns (107 cm in height, 30.5 cm in diameter) with a single madtom per column. Video recordings were analyzed for vertical avoidance at 30 second intervals after addition of Bayluscide granules/washed sand over a period of one hour. Vertical migration of the normally bottom dwelling madtoms to greater than 15 centimeters off the bottom of the column was considered avoidance.
DOI: 10.58119/ulg/qjj0sa/xilru5
title: 19Aeneis_Vergilius_Aeneis_VerAen07.APN

description: :unav
DOI: 10.58119/ulg/qjj0sa/u72dkl
title: 15ProSulla_Cicero_ProSulla_CicSul.APN

description: :unav
DOI: 10.5066/f7k64g5h
title: Birds as indicators of contaminants in the Great Lakes - Egg Contaminants

description: Tree swallows, Tachycineta bicolor, were sampled across the Great Lakes basin in 2010-2015 to provide a system-wide assessment of current exposure to organic contaminants. These results provide information identified as critical by land managers and regulators to assess the �Bird or Animal Deformity or Reproductive Problems� Beneficial Use Impairment. Eggs were collected from 69 sites across all five Great Lakes, including 27 Areas of Concern (AOCs), some with multiple sites, and ten sites not listed as an AOC. Concentrations of organic contaminants in eggs were quantified and compared to background and reproductive effect thresholds. Approximately one-third of the AOCs had geometric mean concentrations of total polychlorinated biphenyls (PCBs) at or below background exposure (0.34 &amp;amp;#61549;g/g wet wt.). Exposure to polybrominated diphenyl ethers (PBDEs) was minimal, and only three of 27 AOCs and 1 non-AOC had geometric mean concentrations that exceeded background for tree swallows (96 ng/g wet wt.). Concentrations of both PCBs and PBDEs were 10 � 20 times below the lower limit for hatching effects. In contrast, geometric mean concentrations of dioxin and furan toxic equivalents (TEQs) at Saginaw River and Bay AOC and Midland, MI, a non-AOC site, exceeded the lower limit for hatching effects (181 pg/g dioxin/furan TEQs). The rest of the sites, except for Cuyahoga River, OH, had geometric mean concentrations of dioxin and furan TEQs below background levels (87 pg/g dioxin/furan TEQs). Other organic contaminants, including p,p'-dichlorodiphenyl-dichloroethylene (DDE), mirex, heptachlor, and chlordane, were at or below background concentrations.
DOI: 10.5066/f7kd1w05
title: LTRM Fish, Vegetation and Water Quality UMRS Sampling Strata

description: The data set includes delineation of sampling strata for the six study reaches of the UMRR Program�s LTRM element. Separate strata coverages exist for each of the three monitoring components (fish, vegetation, and water quality) to meet the differing sampling needs among components. Generally, the sampling strata consist of main channel, side channel, backwater, and impounded areas. The fish component further delineates a �shoreline� portion of the strata to be used for sampling gears deployed only along the shoreline. The data are raster in origin, with the center of each pixel representing the sampling location. Cell size is typically 50 meters, although several water quality strata are at 200 meter cell size.
DOI: 10.5066/f7kd1w22
title: The efficacy of Pennox 343&amp;reg; (oxytetracycline hydrochloride) administered as a static bath to control mortality of freshwater-reared finfish, trial OTC-12_EFF-IMM-07

description: Determine the oxytetracycline hydrochloride concentrations in water samples provided by the Bozeman Fish Technology Center taken during Pennox 343 efficacy studies.
DOI: 10.58119/ulg/qjj0sa/52piba
title: 36Fragmenta_Cicero_ProCFundanioFragmenta_CicCFund.APN

description: :unav
DOI: 10.58119/ulg/qjj0sa/jlglh7
title: 13DeBen3a4_Seneca_DeBeneficiis_SenBenef3a4.APN

description: :unav
DOI: 10.5066/f7kh0kgc
title: Metabolomics: Developing a chemical specific fingerprint

description: We combine cell assays and metabolomics to create a powerful tool, which emerges to elevate the identification of new control chemicals. We combined the use of bigheaded carp fry cell line with metabolite profiling to describe the dose response to thiram. Thiram is a registered pesticide commonly used as a fungicide in the field or as a seed protectant and is known to be toxic to fish. Seven concentrations of thiram were used to dose bighead carp fry cells and silver carp fry cells. II. We identified 700 metabolomic markers and 41 of those markers exhibited a dose response to thiram in the bighead carp fry cells. We identified 1590 metabolomic markers with 205 of those markers exhibited a dose response to thiram in the silver carp fry cells. When the metabolites of both cell lines are compared using volcano plots, 16 metabolomic markers were identified as significant. III. A smaller subset of metabolites indicate that a thiram specific metabolomic fingerprint exists that is not species specific, but instead toxin specific. Application of toxin fingerprints (toxin specific but species independent metabolites) can be used to address the cause of ecological significant events, such as mass fish kills.
DOI: 10.58119/ulg/qjj0sa/ekc2k0
title: 14CicDial_Cicero_DeAmicitia_CicAmici.APN

description: :unav
DOI: 10.58119/ulg/qjj0sa/hgpris
title: Tacitus_TacAnnales_TacAnn11.APN

description: :unav
DOI: 10.17909/g29a-2t15
title: Data from TESS
DOI: 10.5066/f7kk99q9
title: Reproductive success and contaminant associations in tree swallows (Tachycineta bicolor) nesting in U.S. and Binational Great Lakes Areas of Concern

description: During 2010-2014, tree swallow (Tachycineta bicolor) reproductive success was monitored at 68 sites across all 5 Great Lakes, including 58 sites located within Great Lakes Areas of concern (AOCs) and 10 non-AOCs. Sample eggs were collected from tree swallow clutches and analyzed for contaminants including polychlorinated biphenyls (PCBs), dioxin and furans, polybrominated diphenyl ethers, and 34 other organic compounds. Contaminant data were available for 360 of the 1249 clutches monitored. Markov chain multistate modeling was used to assess the importance of 5 ecological and 11 of the dominant contaminants in explaining the pattern of egg and nestling failure rates. Four of 5 ecological variables (female Age, Date within season, Year, and Site) were important explanatory variables. Of the 11 contaminants, only total dioxin and furan toxic equivalents (TEQs) explained a significant amount of the egg failure probabilities. Neither total PCBs nor PCB TEQs explained the variation in egg failure rates. In a separate analysis, polycyclic aromatic hydrocarbon exposure in nestling diet was significantly correlated with the daily probability of egg failure. The eight sites within AOCs which had poorer reproduction when compared to 9 non-AOC sites, the measure of impaired reproduction as define by the Great Lakes Restoration Initiative, were associated with exposure to dioxins and furans, PAHs, or depredation. Only 2 sites had poorer reproduction than the poorest performing non-AOC. Using a classic (non-modeling) approach to estimating reproductive success, 82% of nests hatched at least 1 egg, and 75% of eggs hatched.
DOI: 10.58119/ulg/qjj0sa/xfxfzh
title: 08Annal01_Tacitus_TacAnnales_TacAnn01.APN

description: :unav
DOI: 10.5066/f7ks6ppb
title: Effects of Pseudomonas fluorescens, strain CL145A, SDP (Zequanox&amp;reg;) on non-target macroinvertebrates: Gammarus sp. (Order Amphipoda) and Hexaginid (Family Ephemeridae) mayfly nymphs

description: Zequanox&amp;reg; is a commercial formulation of the killed bacterium, Pseudomonas fluorescens (strain CL145A) that has USEPA approval for use in open water to kill dreissenid mussels. Previous nontarget studies demonstrated the safety and selectivity of the product, but the database is limited for macroinvertebrate taxa and exposure conditions. We evaluated the safety of the product to two high value macroinvertebrates, the amphipod Gammarus lacustris lacutris, and nymphs of the burrowing mayfly, Hexagenia spp., at the maximum approved concentration (100 mg/L A.I.) and exposure duration (8 h). Survival of animals was measured at the end of 8 h exposure and at 24 h post-exposure and 96 h post-exposure. Additionally, histological changes in the digestive tract of both species were compared with controls at 96 h post-exposure. The results showed no effect of Zequanox on survival of either species. Survival of G. lacustris exceeded 85% in all concentrations at all three sampling time points. Survival of Hexagenia spp. ranged from 71% (control) to 91% (50 mg/L) at 8 h, 89-93% at 24 h post-exposure and 70-73% at 96 post-exposure h across all treatments. We also saw no evidence of pathology in the visceral organs of treated animals. Our results indicate that application of Zequanox at the maximum approved concentration and exposure duration does not cause acute mortality or pathology to G. lacustris and Hexagenia spp.
DOI: 10.58119/ulg/qjj0sa/bmuzyu
title: 08Cic2Verrem_Cicero_InVerremActioSecunda_Cic2Ver5.APN

description: :unav
DOI: 10.5066/f7m61jh0
title: Reexamining silver (Hypophthalmichthys molitrix) and bighead (H. nobilis) carp hearing: Data

description: Silver and bighead carp frequency detection was evaluated in response to 100 Hz to 9 kHz using auditory evoked potentials (AEPs). AEPs, consisting of measured minimum Sound Pressure Levels (SPL; dB re 1 ms-2) and Particle Acceleration Thresholds (PAT; dB re 1 ms-2). SPL and PAT were recorded every 100 Hz from 100 Hz to 1000 Hz plus 1500, 2000, 3000, 4000, and 5000 Hz for five individual Silver Carp and five individual Bighead Carp. Minimum detectable PAT and SPLs were measured at 100, 200, 400, 600, 800, 1000, 2000, 4000, and 5000 Hz for three individual Common Carp.
DOI: 10.5066/f7m907x9
title: 2014 Aerial Mosaic, Ottawa National Wildlife Refuge, Crane Creek Estuary

description: The aerial imagery contained in this mosaic was collected on July 17, 2014 with an Applanix 439 Digital Sensor System. These missions were flown at 6&amp;quot;/pixel and 8'/pixel resolution. These mosaics complement the land cover land use data by providing an image format to consider. A flight plan was not used and this resulted in incomplete coverage. The area of interest is the Crane Creek estuary in the Ottawa NWR and the mosaic is for the purpose of habitat monitoring.
DOI: 10.58119/ulg/qjj0sa/2cux7j
title: 13InCatilinam_Cicero_InCatilinam_CicCat4.APN

description: :unav
DOI: 10.5066/f7mp51bw
title: Asian carp eggs cannot be distinguished from other cyprinid species on the basis of morphology alone: Supporting Data

description: Eggs were collected in the Upper Mississippi main stem (Pool 9 and Pool 11) during the summer of 2013. Using previously published morphological characteristics, eggs were positively identified as belonging to an invasive Asian carp genus. A subsample of these eggs was subsequently analyzed using molecular methods to determine species identity. Genetic identification of a total of 41 eggs was attempted using the cytochrome c oxidase 1 (COI) gene. Due to the preservation technique used (formalin) and resulting DNA degradation, sequences from only 17 individuals could be recovered. In all cases, non-carp cyprinids were identified as the most likely species identity (usually a Notropis spp.). In previously published reports, the primary morphological characteristic that distinguishes invasive carp from non-carp cyprinids is size. However, many of the eggs that were identified as non-carp cyprinids genetically were as large as 4.0 mm in diameter (at early developmental stages), large enough to overlap in size with Asian carp eggs on the low end of their size range. Other researchers studying fish eggs and early life history stages should plan on preserving a subset of collected eggs for genetic analysis to confirm morphological identifications.
DOI: 10.5066/f7mp51r8
title: Acoustic deterrence of bighead carp (Hypophthalmichthys nobilis) to a broadband sound stimulus: Data

description: Recent studies have shown the potential of acoustic deterrents against invasive silver carp (Hypophthalmichthys molitrix). This study examined the phonotaxic response of the bighead carp (H. nobilis) to pure tones (500� 2000 Hz) and playbacks of broadband sound from an underwater recording of a 100 hp outboard motor (0.06�10 kHz) in an outdoor concrete pond (10 &amp;times; 5 &amp;times; 1.2 m) at the U.S. Geological Survey Upper Midwest Envi- ronmental Science Center in La Crosse, WI. The number of consecutive times the fish reacted to sound from alter- nating locations at each end of the pond was assessed. Bighead carp were relatively indifferent to the pure tones with median consecutive responses ranging from 0 to 2 reactions away from the sound source. However, fish consistently exhibited significantly (P b 0.001) greater negative phonotaxis to the broadband sound (outboard motor recording) with an overall median response of 20 consecutive reactions during the 10 min trials. In over 50% of broadband sound tests, carp were still reacting to the stimulus at the end of the trial, implying that fish were not habituating to the sound. This study suggests that broadband sound may be an effective deterrent to bighead carp and provides a basis for conducting studies with wild fish.
DOI: 10.58119/ulg/qjj0sa/mpqci6
title: 08SenMarcia_Seneca_AdMarciamDeConsolatione_SenMarci.APN

description: :unav