cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6125042
title: Human-modified landscape acts as refuge for mammals in Atlantic Forest

description: Abstract: Human-modified landscapes (HMLs) are composed by small, isolated and defaunated forest fragments, which are surrounded by agricultural and urban areas. Information on species that thrives in these HMLs is essential to direct conservation strategies in local and regional scales. Since HMLs are dominant in the Atlantic Forest, we aimed to assess the mammalian diversity in a HML in southeastern Brazil and to propose conservation strategies. We collected data of terrestrial (small-, medium- and large-sized) and volant mammals in three small forest fragments (10, 14 and 26 ha) and adjacent areas, between 2003 and 2016, using complementary methods: active search, camera trapping, live-traps, mist nets and occasional records (i.e., roadkills). In addition, we used secondary data to complement our species list. We recorded 35 native mammal species (6 small-sized, 16 medium- and large-sized, and 13 bats) and seven exotic species in the HML. The recorded mammal assemblage (non-volant and volant), although mainly composed of common and generalist species, includes three medium- and large-sized species nationally threatened (Leopardus guttulus, Puma concolor and Puma yagouaroundi) and two data deficient species (Galictis cuja and Histiotus velatus), highlighting the importance of this HML for the maintenance and conservation of mammal populations. Despite highly impacted by anthropogenic disturbances, the study area harbors a significant richness of medium- and large-sized mammals, being an important biodiversity refuge in the region. However, this biodiversity is threatened by the low quality of the habitats, roadkills and abundant populations of domestic cats and dogs. Therefore, we stress the need of conservation strategies focusing on the medium- and large-sized mammals as an umbrella group, which could benefit all biodiversity in the landscape. We recommend actions that promotes biological restoration, aiming to increase structural composition and connectivity of the forest fragments, reducing roadkills and controlling the domestic cats and dogs' populations, in order to maintain and improve the diversity of mammals in long-term.
DOI: 10.6084/m9.figshare.6125042.v1
title: Human-modified landscape acts as refuge for mammals in Atlantic Forest

description: Abstract: Human-modified landscapes (HMLs) are composed by small, isolated and defaunated forest fragments, which are surrounded by agricultural and urban areas. Information on species that thrives in these HMLs is essential to direct conservation strategies in local and regional scales. Since HMLs are dominant in the Atlantic Forest, we aimed to assess the mammalian diversity in a HML in southeastern Brazil and to propose conservation strategies. We collected data of terrestrial (small-, medium- and large-sized) and volant mammals in three small forest fragments (10, 14 and 26 ha) and adjacent areas, between 2003 and 2016, using complementary methods: active search, camera trapping, live-traps, mist nets and occasional records (i.e., roadkills). In addition, we used secondary data to complement our species list. We recorded 35 native mammal species (6 small-sized, 16 medium- and large-sized, and 13 bats) and seven exotic species in the HML. The recorded mammal assemblage (non-volant and volant), although mainly composed of common and generalist species, includes three medium- and large-sized species nationally threatened (Leopardus guttulus, Puma concolor and Puma yagouaroundi) and two data deficient species (Galictis cuja and Histiotus velatus), highlighting the importance of this HML for the maintenance and conservation of mammal populations. Despite highly impacted by anthropogenic disturbances, the study area harbors a significant richness of medium- and large-sized mammals, being an important biodiversity refuge in the region. However, this biodiversity is threatened by the low quality of the habitats, roadkills and abundant populations of domestic cats and dogs. Therefore, we stress the need of conservation strategies focusing on the medium- and large-sized mammals as an umbrella group, which could benefit all biodiversity in the landscape. We recommend actions that promotes biological restoration, aiming to increase structural composition and connectivity of the forest fragments, reducing roadkills and controlling the domestic cats and dogs' populations, in order to maintain and improve the diversity of mammals in long-term.
DOI: 10.6084/m9.figshare.6125039
title: Effects of invasive species snails in continental aquatic bodies of Pernambucano semiarid

description: Abstract Aim The aim of this study was to survey the species of molluscs and to evaluate the effect of exotic species on the native mollusks of three reservoirs in the Pajeú Basin Cachoeira II, Jazigo and Serrinha. Methods Sampling was carried out with trawl net (5 mm mesh opening) and hand net (2 mm mesh opening). Results and conclusions Were quantified 60,244 specimens, distributed among the species Melanoides tuberculata (49,398), Pomacea lineata (573), Biomphalaria straminea (376) and Physa marmorata (01). The invasive exotic species M. tuberculata was dominant in all reservoirs with a relative abundance greater than 85% and the other species were classified as occasional and rare, with emphasis in Physa marmorata that is present in the red list of species vulnerable to extinction. Regarding the frequency of occurrence, all species were classified as euconstant (occurrence greater than 65%), except P. lineata and P. marmorata, which were classified as ancillary (occurrence less than 40%). Among the species, M. tuberculata were the highest average density (1,636 ind.m-2) in Serrinha reservoir, showed a strong adaptation to the environmental conditions, due to its high dominance in all the reservoirs, being probably the main cause for the low diversity and density indices of native molluscs. Since P. marmorata presented low density and frequency, becoming an important point to be investigated as possible species impaired by the dominance of M. tuberculata.
DOI: 10.6084/m9.figshare.6125039.v1
title: Effects of invasive species snails in continental aquatic bodies of Pernambucano semiarid

description: Abstract Aim The aim of this study was to survey the species of molluscs and to evaluate the effect of exotic species on the native mollusks of three reservoirs in the Pajeú Basin Cachoeira II, Jazigo and Serrinha. Methods Sampling was carried out with trawl net (5 mm mesh opening) and hand net (2 mm mesh opening). Results and conclusions Were quantified 60,244 specimens, distributed among the species Melanoides tuberculata (49,398), Pomacea lineata (573), Biomphalaria straminea (376) and Physa marmorata (01). The invasive exotic species M. tuberculata was dominant in all reservoirs with a relative abundance greater than 85% and the other species were classified as occasional and rare, with emphasis in Physa marmorata that is present in the red list of species vulnerable to extinction. Regarding the frequency of occurrence, all species were classified as euconstant (occurrence greater than 65%), except P. lineata and P. marmorata, which were classified as ancillary (occurrence less than 40%). Among the species, M. tuberculata were the highest average density (1,636 ind.m-2) in Serrinha reservoir, showed a strong adaptation to the environmental conditions, due to its high dominance in all the reservoirs, being probably the main cause for the low diversity and density indices of native molluscs. Since P. marmorata presented low density and frequency, becoming an important point to be investigated as possible species impaired by the dominance of M. tuberculata.
DOI: 10.6084/m9.figshare.6125036
title: Water volume reduction increases eutrophication risk in tropical semi-arid reservoirs

description: Abstract Aim Global patterns of temperature and precipitation have significantly changed over the last century and nearly all predictions point to even greater changes by the end of 2100. Long periods of drought in semi-arid regions generally reduce reservoirs and lakes water level, increasing the nutrients concentrations in the water. Our principal hypothesis is that water volume reduction, driven by prolonged droughts, will increase reservoirs susceptibility to eutrophication and accordingly an increase in trophic state. To test this hypothesis, we used a comparative analysis of ecosystems in a space-for-time substitution approach, in a Brazilian semi-arid region, to predict the consequences of reservoirs water volume reduction on key limnological variables. Methods We sampled 16 reservoirs located in two sub-basins with contrasting rainfall regimes, inserted on Piranhas-Açu watershed. The Seridó River basin (SB) is dry and the Piancó River basin (SB) is humid, with annual mean precipitation of 500 and 700 mm, respectively. Linear regressions analyzes were performed to assess whether the percentage of maximum volume stored (%MVS) is a good predictor for total phosphorus (TP), total nitrogen (TN) and chlorophyll-a (CHLA). In addition, a two factorial analysis of variance (two-way ANOVA) was performed to test for period (dry, very dry and extremely dry), basin (SB and PB) and their interactions effects on TP, TN, CHLA, conductivity, turbidity, and Secchi depth. Results The results showed a reduction in the reservoirs %MVS both for PB and SB regions. At the extremely dry period, all reservoirs were classified as eutrophic, but TP concentrations reached much higher values in SB than in PB. The linear regressions analyses showed that the TP and TN were negatively related to %MVS during all periods sampled. The two-way ANOVA showed that there were significant basin and period effects on TP, TN, Secchi depth and turbidity, whereas for CHLA and conductivity only basin effects were observed. In addition, we found significant interaction effects between period and basin on TP, TN and turbidity. Conclusions We conclude that the contrasting levels of rainfall observed between the two basins affect the water quality and trophic state of the reservoirs and these effects are magnified by water volume reduction. Therefore, our findings might help to predict the consequences of rainfall reductions on freshwater ecosystems of Brazilian drylands.
DOI: 10.6084/m9.figshare.6125036.v1
title: Water volume reduction increases eutrophication risk in tropical semi-arid reservoirs

description: Abstract Aim Global patterns of temperature and precipitation have significantly changed over the last century and nearly all predictions point to even greater changes by the end of 2100. Long periods of drought in semi-arid regions generally reduce reservoirs and lakes water level, increasing the nutrients concentrations in the water. Our principal hypothesis is that water volume reduction, driven by prolonged droughts, will increase reservoirs susceptibility to eutrophication and accordingly an increase in trophic state. To test this hypothesis, we used a comparative analysis of ecosystems in a space-for-time substitution approach, in a Brazilian semi-arid region, to predict the consequences of reservoirs water volume reduction on key limnological variables. Methods We sampled 16 reservoirs located in two sub-basins with contrasting rainfall regimes, inserted on Piranhas-Açu watershed. The Seridó River basin (SB) is dry and the Piancó River basin (SB) is humid, with annual mean precipitation of 500 and 700 mm, respectively. Linear regressions analyzes were performed to assess whether the percentage of maximum volume stored (%MVS) is a good predictor for total phosphorus (TP), total nitrogen (TN) and chlorophyll-a (CHLA). In addition, a two factorial analysis of variance (two-way ANOVA) was performed to test for period (dry, very dry and extremely dry), basin (SB and PB) and their interactions effects on TP, TN, CHLA, conductivity, turbidity, and Secchi depth. Results The results showed a reduction in the reservoirs %MVS both for PB and SB regions. At the extremely dry period, all reservoirs were classified as eutrophic, but TP concentrations reached much higher values in SB than in PB. The linear regressions analyses showed that the TP and TN were negatively related to %MVS during all periods sampled. The two-way ANOVA showed that there were significant basin and period effects on TP, TN, Secchi depth and turbidity, whereas for CHLA and conductivity only basin effects were observed. In addition, we found significant interaction effects between period and basin on TP, TN and turbidity. Conclusions We conclude that the contrasting levels of rainfall observed between the two basins affect the water quality and trophic state of the reservoirs and these effects are magnified by water volume reduction. Therefore, our findings might help to predict the consequences of rainfall reductions on freshwater ecosystems of Brazilian drylands.
DOI: 10.6084/m9.figshare.6125033
title: The impact of a biomanipulation experiment on the ichthyofauna diet from a neotropical reservoir in Brazilian semiarid

description: Abstract Aim To evaluate the impact of a biomanipulation experiment on the feeding of fish species from a neotropical semiarid reservoir, before and after the removal of the exotic species Oreochromis niloticus. Methods The values of Food Index were analyzed for six species: Oreochromis niloticus , Prochilodus brevis Steindachner,1875, Hypostomus cf. paparie Fowler,1941, Hoplias gr. malabaricus Bloch,1794, Astyanax bimaculatus Linnaeus,1758 and Leporinus piau Fowler,194. All data were obtained in two periods, before of the removal O. niloticus (May 2012 to January 2013) and after its removal (April 2013 to November 2013). The Morisita-Horn index was used to evaluate the feeding similarity among the six species and determine trophic categories (insectivorous, omnivorous, iliophaga and piscivora). To establish the probable variations due the presence of O. niloticus species, the Food Index of the six species was used in a Bray-Curtis similarity matrix. Through the Non-metric Multidimensional Scaling (NMDS) we could not observe any differences among items consumed by different species. The Canonical Correspondence Analysis (CCA) was used to assay the influence of environmental variables on the dietary, from the Food Index data. Results All species were classified in four trophic categories that do not shown any variation among the formed groups during studied periods. After the removal of Nile tilapia some species showed changes in food items, according to NMDS. The CCA indicated low association among the monthly Food Index of species and the environmental changes. Conclusion The process of biomanipulation on the Ecological Station from Serra Negra reservoir, which compares the dietaries from five local species before and after removal of exotic species Oreochromis niloticus, resulted in modification of dietary composition from three of five studied species.
DOI: 10.6084/m9.figshare.6125033.v1
title: The impact of a biomanipulation experiment on the ichthyofauna diet from a neotropical reservoir in Brazilian semiarid

description: Abstract Aim To evaluate the impact of a biomanipulation experiment on the feeding of fish species from a neotropical semiarid reservoir, before and after the removal of the exotic species Oreochromis niloticus. Methods The values of Food Index were analyzed for six species: Oreochromis niloticus , Prochilodus brevis Steindachner,1875, Hypostomus cf. paparie Fowler,1941, Hoplias gr. malabaricus Bloch,1794, Astyanax bimaculatus Linnaeus,1758 and Leporinus piau Fowler,194. All data were obtained in two periods, before of the removal O. niloticus (May 2012 to January 2013) and after its removal (April 2013 to November 2013). The Morisita-Horn index was used to evaluate the feeding similarity among the six species and determine trophic categories (insectivorous, omnivorous, iliophaga and piscivora). To establish the probable variations due the presence of O. niloticus species, the Food Index of the six species was used in a Bray-Curtis similarity matrix. Through the Non-metric Multidimensional Scaling (NMDS) we could not observe any differences among items consumed by different species. The Canonical Correspondence Analysis (CCA) was used to assay the influence of environmental variables on the dietary, from the Food Index data. Results All species were classified in four trophic categories that do not shown any variation among the formed groups during studied periods. After the removal of Nile tilapia some species showed changes in food items, according to NMDS. The CCA indicated low association among the monthly Food Index of species and the environmental changes. Conclusion The process of biomanipulation on the Ecological Station from Serra Negra reservoir, which compares the dietaries from five local species before and after removal of exotic species Oreochromis niloticus, resulted in modification of dietary composition from three of five studied species.
DOI: 10.6084/m9.figshare.6125030
title: brownbanded bamboo shark peptide sequences predicted on Cpunctatum_v1.0

description: This resource is associated with our original publication https://doi.org/10.1038/s41559-018-0673-5
DOI: 10.6084/m9.figshare.6125021
title: Comparative study of three xenic media culture for cultivation of Balantidium coli strains

description: Abstract The aim of the present study was to evaluate the growth rate of Balantidium coli in three xenic media cultures. Between 2013 and 2015, 10 B. coli isolates obtained from feces of Cynomolgus macaques, and 30 isolates from feces of pigs were studied. An inoculum of 500 trophozoites was transferred to tubes containing LES, TYSGM-9 and Pavlova media. These cultures were evaluated at incubation times of 24, 48, 72 and 96 hours. In most of strains analyzed wasn’t showed significant difference in the growth rate comparing TYSGM-9 and Pavlova media (Wilcoxon p&gt;0.016). In Pavlova medium, the trophozoites showed a maximum growth at 72 hours with significant difference when compared with the times of 24 h and 96 h (Wilcoxon &lt;0.008). In LES, viable trophozoites were observed until 24 hours, with a significant difference (Friedman p&lt;0.05, Wilcoxon p&lt;0.016) in the number of parasite cells compared with Pavlova and TYSGM-9 media cultures. Thus, LES medium seemed to be less adequate than the other media for maintenance of B. coli. Despite the satisfactory results in TYSGM-9, Pavlova medium was considered ideal for the maintenance of this protozoan strain, guaranteeing the viability of the parasite with subculture every three days, presenting lower costs.
DOI: 10.6084/m9.figshare.6125021.v1
title: Comparative study of three xenic media culture for cultivation of Balantidium coli strains

description: Abstract The aim of the present study was to evaluate the growth rate of Balantidium coli in three xenic media cultures. Between 2013 and 2015, 10 B. coli isolates obtained from feces of Cynomolgus macaques, and 30 isolates from feces of pigs were studied. An inoculum of 500 trophozoites was transferred to tubes containing LES, TYSGM-9 and Pavlova media. These cultures were evaluated at incubation times of 24, 48, 72 and 96 hours. In most of strains analyzed wasn’t showed significant difference in the growth rate comparing TYSGM-9 and Pavlova media (Wilcoxon p&gt;0.016). In Pavlova medium, the trophozoites showed a maximum growth at 72 hours with significant difference when compared with the times of 24 h and 96 h (Wilcoxon &lt;0.008). In LES, viable trophozoites were observed until 24 hours, with a significant difference (Friedman p&lt;0.05, Wilcoxon p&lt;0.016) in the number of parasite cells compared with Pavlova and TYSGM-9 media cultures. Thus, LES medium seemed to be less adequate than the other media for maintenance of B. coli. Despite the satisfactory results in TYSGM-9, Pavlova medium was considered ideal for the maintenance of this protozoan strain, guaranteeing the viability of the parasite with subculture every three days, presenting lower costs.
DOI: 10.6084/m9.figshare.6125018
title: Risk factors and comorbidities in Brazilian patients with orofacial clefts

description: Abstract: Considering that environmental risk factors substantially contribute to the etiology of orofacial clefts and that knowledge about the characteristics and comorbidities associated with oral clefts is fundamental to promoting better quality of life, this study aimed to describe the risk factors, main characteristics, and comorbidities of a group of patients with cleft lip and/or cleft palate (CL/P) from Rio Grande do Norte (RN), Brazil. Data were obtained from 173 patients with CL/P using a form from the Brazilian database on Orofacial Clefts. Most patients were male with cleft lip and palate and had a normal size and weight at birth; presented few neonatal intercurrent events; and had anemia and respiratory and cardiovascular diseases as main associated comorbidities. They also required timely surgical rehabilitation and multidisciplinary care to stimulate their neuropsychomotor development. In addition, a high frequency of familial recurrence and of parental consanguinity was evidenced in the studied population, especially for the cleft lip and cleft palate type. Other relevant findings were the considerable maternal exposure to alcohol, infections, smoking, and hypertension, as well as low supplementation with vitamins and minerals and deliberate consumption of analgesics, antibiotics, and antihypertensives during pregnancy. Characterization of the CL/P patient profile is essential for the planning of health services and integration among the health professionals involved in the diagnosis and treatment of these malformations. Our results reinforce the need for additional research to confirm the association between environmental factors and the development of orofacial clefts.
DOI: 10.6084/m9.figshare.6125018.v1
title: Risk factors and comorbidities in Brazilian patients with orofacial clefts

description: Abstract: Considering that environmental risk factors substantially contribute to the etiology of orofacial clefts and that knowledge about the characteristics and comorbidities associated with oral clefts is fundamental to promoting better quality of life, this study aimed to describe the risk factors, main characteristics, and comorbidities of a group of patients with cleft lip and/or cleft palate (CL/P) from Rio Grande do Norte (RN), Brazil. Data were obtained from 173 patients with CL/P using a form from the Brazilian database on Orofacial Clefts. Most patients were male with cleft lip and palate and had a normal size and weight at birth; presented few neonatal intercurrent events; and had anemia and respiratory and cardiovascular diseases as main associated comorbidities. They also required timely surgical rehabilitation and multidisciplinary care to stimulate their neuropsychomotor development. In addition, a high frequency of familial recurrence and of parental consanguinity was evidenced in the studied population, especially for the cleft lip and cleft palate type. Other relevant findings were the considerable maternal exposure to alcohol, infections, smoking, and hypertension, as well as low supplementation with vitamins and minerals and deliberate consumption of analgesics, antibiotics, and antihypertensives during pregnancy. Characterization of the CL/P patient profile is essential for the planning of health services and integration among the health professionals involved in the diagnosis and treatment of these malformations. Our results reinforce the need for additional research to confirm the association between environmental factors and the development of orofacial clefts.