cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.rm3558f
title: Data from: Inbreeding tolerance as a pre-adapted trait for invasion success in the invasive ant Brachyponera chinensis

description: Identifying traits that facilitate species introductions and successful
 invasions of ecosystems represents a key issue in ecology. Following their
 establishment into new environments, many non-native species exhibit
 phenotypic plasticity with post-introduction changes in behavior,
 morphology or life history traits that allow them to overcome the presumed
 loss of genetic diversity resulting in inbreeding and reduced adaptive
 potential. Here we present a unique strategy in the invasive ant
 Brachyponera chinensis (Emery), in which inbreeding tolerance is a
 pre-adapted trait for invasion success, allowing this ant to cope with
 genetic depletion following a genetic bottleneck. We report for the first
 time that inbreeding is not a consequence of the founder effect following
 introduction, but it is due to mating between sister queens and their
 brothers that pre-exists in native populations which may have helped it
 circumvent the cost of invasion. We show that a genetic bottleneck does
 not affect the genetic diversity or the level of heterozygosity within
 colonies and suggest that generations of sibmating in native populations
 may have reduced inbreeding depression through purifying selection of
 deleterious alleles. This work highlights how a unique life history may
 pre-adapt some species for biological invasions.
description: Genotypes of the
 invasive ant Brachyponera chinensis in its native and introduced
 rangesGenotypes of the
 invasive ant Brachyponera chinensis in its native and introduced ranges.
 The dataset contains samples names, locations, castes and genotypes at 20
 microsatellite loci.Dryad_EYER.xlsxSequence_COI_EYERMitochondrial sequences of the Cytochrome oxidase 1 marker for the invasive ant species Brachyponera chinensis in its native and introduced ranges.
DOI: 10.5281/zenodo.10576452
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by George Edward Bohart, http://www.wikidata.org/entity/Q86458114. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q86458114
DOI: 10.5281/zenodo.18381876
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by George Edward Bohart, http://www.wikidata.org/entity/Q86458114. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q86458114
DOI: 10.5061/dryad.868
title: Data from: Tracing the origins of Iguanid lizards and Boine snakes of the Pacific

description: In 1947, when Thor Heyerdahl’s Kon‐Tiki hit ground in the Tuamotu
 archipelago, 102 days and 4,000 km from its point of origin in South
 America, he inadvertently provided support for one of the most remarkable
 hypotheses of vertebrate dispersal. Iguanid lizards and boine snakes are
 ancient Gondwanan lineages whose distribution has been demonstrated to
 have been influenced by continental drift. Their enigmatic presence on the
 islands of the Pacific, however, has drawn fantastical conclusions of more
 than 8,000‐km rafting from the Americas. We reexamine the hypothesis of
 dispersal in light of new molecular data and divergence time estimates.
 Our results suggest an early Paleogene (50–60 million years) divergence of
 these groups and the plausibility of an Asiatic or Australian (over land)
 source. Because the subfossil record indicates that iguanas (but not
 snakes) were a primary food source of island inhabitants, the absence of
 these species from islands with a longer history of human presence is
 unsurprising. Together these findings are taken as evidence of the
 influence humans have had on these taxa and are put forth as an example of
 anthropogenic obfuscation of biogeographic history. We suggest that this
 history is one of terrestrial connections permitting the colonization of
 the islands of the Pacific.
description: Lizard
 AlignmentLizardInterleaved.TXTSnake AlignmentSnakesDryad
DOI: 10.5061/dryad.5vm5g2f
title: Data from: Does wolf presence reduce moose browsing intensity in young forest plantations?

description: Large carnivores can be a key factor in shaping their ungulate prey’s
 behavior, which may affect lower trophic levels. While most studies on
 trade-offs between food acquisition and risk avoidance by ungulate prey
 species have been conducted in areas with limited human impact, carnivores
 are now increasingly returning to highly anthropogenic landscapes. Many of
 these landscapes are dominated by forestry, and ungulate-forestry
 conflicts are an increasing issue. The aim of this study was to test if
 the indirect effects of a re-colonizing large predator, the wolf (Canis
 lupus), results in a change in browsing intensity by moose (Alces alces)
 in young forest plantations in a boreal forest in Sweden. We selected 24
 different forest plantations, with 12 located in low-wolf and 12 in
 high-wolf utilization areas. In each plantation, we measured browsing
 intensity, tree height, tree density, distance to the closest forest edge
 and we counted the number of moose pellet groups. In contrast to our
 predictions, wolf utilization was not the main driver of moose browsing
 patterns. Instead, moose browsing intensity declined with tree density and
 height. Separate analyses on the main tree species showed that wolf
 utilization had an influence, but browsing intensity was in fact higher in
 the high-wolf utilization areas for three out of five tree species. This
 pattern seemed to be driven by a strong confounding relationship between
 wolf utilization, tree density and height, which were both lower in the
 high-wolf utilization areas. We argue that this confounding effect is due
 to wolves being pushed towards the less productive parts of the landscape
 away from human activity centers. Therefore, we concluded that in order to
 better understand carnivore driven risk- mediated effects on herbivore
 behavior in anthropogenic landscapes we need to better understand the
 complexity of human-carnivore-prey-ecosystem interactions.
description: Data_file_manuscriptThis data file contains raw data collected at the plantation scale, within-plantation scale and the raw data from the number of pellet groups collected.
DOI: 10.5061/dryad.rj04r
title: Data from: European phylogeography of the epiphytic lichen fungus Lobaria pulmonaria and its green algal symbiont

description: In lichen symbiosis, fungal and algal partners form close associations,
 often co-dispersed by vegetative propagules. Due to the particular
 interdependence, processes such as colonization, dispersal or genetic
 drift are expected to result in congruent patterns of genetic structure in
 the symbionts. To study the population structure of an obligate symbiotic
 system in Europe, we genotyped the fungal and algal symbionts of the
 epiphytic lichen Lobaria pulmonaria at eight and seven microsatellite
 loci, respectively, and analyzed about 4300 L. pulmonaria thalli from 142
 populations from the species' European distribution range. Based on a
 centroid approach, which localizes centers of genetic differentiation with
 a high frequency of geographically restricted alleles, we identified the
 South Italy-Balkan region as the primary glacial refugial area of the
 lichen symbiosis. Procrustean rotation analysis and a distance congruence
 test between the fungal and algal population graphs indicated general
 concordance between the phylogeographies of the symbionts. The incongruent
 patterns found in areas of post-glacial recolonization may show the
 presence of an additional refugial area for the fungal symbiont, and the
 impact that horizontal photobiont transmission and different mutation
 rates of the symbionts have on their genotypic associations at a
 continental scale.
description: Multilocus SSR genotypes
 of Lobaria pulmonariaClone-corrected
 fungal-algal multilocus genotypes (15 microsatellite markers) of the
 lichen symbiosis Lobaria pulmonaria from 142 European
 populationsWidmer et
 al_2012.xlsx
DOI: 10.5061/dryad.k78g1
title: Data from: Hospital costs of out-of-hospital cardiac arrest patients treated in intensive care; a single centre evaluation using the national tariff-based system

description: Objectives: There is a scarcity of literature reporting hospital costs for
 treating out of hospital cardiac arrest (OOHCA) survivors, especially
 within the UK. This is essential for assessment of cost-effectiveness of
 interventions necessary to allow just allocation of resources within the
 National Health Service. We set out primarily to calculate costs
 stratified against hospital survival and neurological outcomes.
 Secondarily, we estimated cost effectiveness based on estimates of
 survival and utility from previous studies to calculate costs per quality
 adjusted life year (QALY). Setting: We performed a single centre (London)
 retrospective review of in-hospital costs of patients admitted to the
 intensive care unit (ICU) following return of spontaneous circulation
 (ROSC) after OOHCA over 18 months from January 2011 (following widespread
 introduction of targeted temperature management and primary percutaneous
 intervention). Participants: Of 69 successive patients admitted over an
 18-month period, survival and cerebral performance category (CPC) outcomes
 were obtained from review of databases and clinical notes. The Trust
 finance department supplied ICU and hospital costs using the Payment by
 Results UK system. Results: Of those patients with ROSC admitted to ICU,
 survival to hospital discharge (any CPC) was 33/69 (48%) with 26/33
 survivors in CPC 1–2 at hospital discharge. Cost per survivor to hospital
 discharge (including total cost of survivors and non-survivors) was
 £50 000, cost per CPC 1–2 survivor was £65 000. Cost and length of stay of
 CPC 1–2 patients was considerably lower than CPC 3–4 patients. The
 majority of the costs (69%) related to intensive care. Estimated cost per
 CPC 1–2 survivor per QALY was £16 000. Conclusions: The costs of
 in-hospital patient care for ICU admissions following ROSC after OOHCA are
 considerable but within a reasonable threshold when assessed from a QALY
 perspective.
description: OOHCA Master ICU
 Database vDataDryad
DOI: 10.5061/dryad.b1t61
title: Data from: A methylation-to-expression feature model for generating accurate prognostic risk scores and identifying disease targets in clear cell kidney cancer

description: Many researchers now have available multiple high-dimensional molecular
 and clinical datasets when studying a disease. As we enter this multi-omic
 era of data analysis, new approaches that combine different levels of data
 (e.g. at the genomic and epigenomic levels) are required to fully
 capitalize on this opportunity. In this work, we outline a new approach to
 multi-omic data integration, which combines molecular and clinical
 predictors as part of a single analysis to create a prognostic risk score
 for clear cell renal cell carcinoma. The approach integrates data in
 multiple ways and yet creates models that are relatively straightforward
 to interpret and with a high level of performance. Furthermore, the
 proposed process of data integration itself captures relationships in the
 data that represent highly disease-relevant functions.
description: Supplementary File
 1Supplementary methods,
 tables, and figures.SupplementaryFile1.pdfSupplementary File 2Gene set network enrichment of M2EFM gene signature for clear cell renal cell carcinoma. Results from Web Gestalt.SupplementaryFile2.tsvSupplementary File 3GO enrichment analysis of M2EFM gene signature for clear cell renal cell carcinoma. Results from Web Gestalt.SupplementaryFile3.tsv
DOI: 10.5061/dryad.gh730
title: Data from: Consistency of animal social networks after disturbance

description: Social networks encompass both individual and group phenotypes that have
 been shown to covary with fitness in several species. In order for network
 characters to be evolutionarily important, they must reliably reflect
 properties of an individual or groups of individuals; however, it is
 unknown whether network traits are consistently expressed at either level.
 To determine if measurable components of individual social network
 position were repeatable and if the network structure as a whole was
 consistent in Bolitotherus cornutus (the forked fungus beetle) we
 constructed eight experimental populations. Half of the populations were
 disturbed between two observation periods. Two individual network metrics
 (strength and betweenness) were significantly repeatable across time in
 all treatments; a third (clustering coefficient) was not. At the network
 level, all three metrics changed more in undisturbed than disturbed
 networks. These findings suggest that individual network position can be a
 consistent property of individuals that is resilient to disturbance and
 could experience selection in a predictable fashion. However, group
 network structure seems to change over time unless reset by disturbance.
description: Network
 EdgelistThis file is an edgelist
 of all social interactions that occurred during our experiment. We have
 also calculated the simple ratio index using these interactions and that
 is included here. The two letter codes are individuals.SRI_edgelist.csvNetwork_Positions_ObservedThis file contains the observed network values for each individual in each period. The data refer to their treatment (C = undisturbed, T = disturbed), Period 1 = time 1 and 2 = time 2. The tub column refers to the population the individuals were placed in. Elytra is in millimeters and represents the measurement from the caudal end of the elytra to the scutellum. All network metrics were calculated using the R package t-net with strength assigned an alpha of 0.5.NetworkPositions_Observed.csv
DOI: 10.5061/dryad.m55m7
title: Data from: Study of morphological variation of northern Neotropical Ariidae reveals conservatism despite macrohabitat transitions

description: Background: Morphological convergence triggered by trophic adaptations is
 a common pattern in adaptive radiations. The study of shape variation in
 an evolutionary context is usually restricted to well-studied fish models.
 We take advantage of the recently revised systematics of New World Ariidae
 and investigate skull shape evolution in six genera of northern
 Neotropical Ariidae. They constitute a lineage that diversified in the
 marine habitat but repeatedly adapted to freshwater habitats. 3D geometric
 morphometrics was applied for the first time in catfish skulls and
 phylogenetically informed statistical analyses were performed to test for
 the impact of habitat on skull diversification after habitat transition in
 this lineage. Results: We found that skull shape is conserved throughout
 phylogeny. A morphospace analysis revealed that freshwater and marine
 species occupy extreme ends of the first principal component axis and that
 they exhibit similar Procrustes variances. Yet freshwater species occupy
 the smallest shape space compared to marine and brackish species (based on
 partial disparity), and marine and freshwater species have the largest
 Procrustes distance to each other. We observed a single case of shape
 convergence as derived from 'C-metrics', which cannot be
 explained by the occupation of the same habitat. Conclusions: Although
 Ariidae occupy such a broad spectrum of different habitats from sea to
 freshwater, the morphospace analysis and analyses of shape and
 co-variation with habitat in a phylogenetic context shows that
 conservatism dominates skull shape evolution among ariid genera.
description: input_17LMcontains 3D landmark data of 17 landmarks taken on catfish skullsinput_18LMcontains 3D geometric morphometric landmark data taken on sea catfish skullsskulllinks_17LMcontains skull links necessary for generalized Procrustes fit for the 17LM datasetskulllinks_18LMcontains skull links necessary for generalized Procrustes fit for the 18LM datasetoutlinecontains skull outline necessary for producing shape change graphs from the 3D GM datar_analysesR script, contains all code necessary to reproduce the results and figures presented in this manuscript, except for the analyses of convergencer_AnalysisOfConvergenceR script, contains all code necessary to reproduce the results and figures for the analyses of convergence
DOI: 10.5061/dryad.jh564
title: Data from: Changes in tree and liana communities along a successional gradient in a tropical dry forest in south-eastern Brazil

description: We investigated changes in species composition and structure of tree and
 liana communities along a successional gradient in a seasonally dry
 tropical forest. There was a progressive increase in tree richness and all
 tree structural traits from early to late stages, as well as marked
 changes in tree species composition and dominance. This pattern is
 probably related to pasture management practices such as ploughing, which
 remove tree roots and preclude regeneration by resprouting. On the other
 hand, liana density decreased from intermediate to late stages, showing a
 negative correlation with tree density. The higher liana abundance in
 intermediate stage is probably due to a balanced availability of support
 and light availability, since these variables may show opposite trends
 during forest growth. Predicted succession models may represent extremes
 in a continuum of possible successional pathways strongly influenced by
 land use history, climate, soil type, and by the outcomes of tree–liana
 interactions.
description: Database for Dryad mata
 seca curated
DOI: 10.5061/dryad.gs390
title: Data from: 'Selfish herds' of guppies follow complex rather than simple rules when information is not limited

description: Under the threat of predation, animals can decrease their level of risk by
 moving towards other individuals to form compact groups. A significant
 body of theoretical work has proposed multiple movement rules, varying in
 complexity, which might underlie this process of aggregation. However, if
 and how animals use these rules to form compact groups is still not well
 understood, and how environmental factors affect the use of these rules
 even less so. Here, we evaluate the success of different movement rules,
 by comparing their predictions with the movement seen when shoals of
 guppies (Poecilia reticulata) form under the threat of predation. We
 repeated the experiment in a turbid environment to assess how the use of
 the movement rules changed when visual information is reduced. During a
 simulated predator attack, guppies in clear water used complex rules that
 took multiple neighbours into account, forming compact groups. In turbid
 water, the difference between all rule predictions and fish movement paths
 increased, particularly for complex rules, and the resulting shoals were
 more fragmented than in clear water. We conclude that guppies are able to
 use complex rules to form dense aggregations, but that environmental
 factors can limit their ability to do so.
description: Fish positions - clear
 waterX and Y coordinates of
 the fish in each shoal in clear waterfish positions -
 clear.xlsxFish positions - turbid
 waterX and Y coordinates of
 the fish in each shoal in turbid waterfish positions -
 turbid.xlsxNumber of
 neighboursThe number of neighbours
 within 3-body lengths of each focal fishnumber of
 neighbours.csvLatency to recover from
 the predator stimulusThis file contains the
 frame number at which individuals initiated aggregation behaviour, for all
 shoals in clear and turbid water. Missing values indicate fish that
 remained frozen.response
 latencies.csvSource code for
 predicted movement rulesMatlab .m file
 containing the code used to generate the predicted movement paths of
 agents following each of the movement rules specified in the
 manuscriptselfish_herd.m
DOI: 10.5061/dryad.gk42k
title: Data from: Do males matter? Testing the effects of male genetic background on female meiotic crossover rates in Drosophila melanogaster

description: Meiotic recombination is a critical genetic process as well as a pivotal
 evolutionary force. Rates of crossing-over are highly variable within and
 between species, due to both genetic and environmental factors. Early
 studies in Drosophila implicated female genetic background as a major
 determinant of crossover rate and recent work has highlighted male genetic
 background as a possible mediator as well. Our study employed classical
 genetics to address how female and male genetic backgrounds individually
 and jointly affect crossover rates. We measured rates of crossing over in
 a 33 cM region of the Drosophila melanogaster X chromosome using a
 two-step crossing scheme exploiting visible markers. In total, we measured
 crossover rates of 10 inbred lines in a full diallel cross. Our
 experimental design facilitates measuring the contributions of female
 genetic background, male genetic background, and female × male genetic
 background interaction effects on rates of crossing-over in females. Our
 results indicate that although female genetic background significantly
 affects female meiotic crossover rates in Drosophila, male genetic
 background and the interaction of female and male genetic backgrounds have
 no significant effect. These findings thus suggest that male-mediated
 effects are unlikely to contribute greatly to variation in recombination
 rates in natural populations of Drosophila.
description: Raw Progeny Counts for
 Experimental CrossesThis excel file includes
 the number of progeny scored from each experimental vial, separated into
 appropriate phenotypic classes.ID
 14-0134.R1.xlsx