cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30302577
title: Additional file 2 of Elimination of CDX2 restricts intestinal hybrid differentiation signatures in stem cell-derived hepatocyte-like cells

description: Additional file 2.
DOI: 10.6084/m9.figshare.30302577.v1
title: Additional file 2 of Elimination of CDX2 restricts intestinal hybrid differentiation signatures in stem cell-derived hepatocyte-like cells

description: Additional file 2.
DOI: 10.6084/m9.figshare.30302580
title: Additional file 3 of Elimination of CDX2 restricts intestinal hybrid differentiation signatures in stem cell-derived hepatocyte-like cells

description: Additional file 3.
DOI: 10.6084/m9.figshare.30302580.v1
title: Additional file 3 of Elimination of CDX2 restricts intestinal hybrid differentiation signatures in stem cell-derived hepatocyte-like cells

description: Additional file 3.
DOI: 10.6084/m9.figshare.30302583
title: Additional file 4 of Elimination of CDX2 restricts intestinal hybrid differentiation signatures in stem cell-derived hepatocyte-like cells

description: Additional file 4.
DOI: 10.6084/m9.figshare.30302583.v1
title: Additional file 4 of Elimination of CDX2 restricts intestinal hybrid differentiation signatures in stem cell-derived hepatocyte-like cells

description: Additional file 4.
DOI: 10.6084/m9.figshare.30302586
title: Additional file 5 of Elimination of CDX2 restricts intestinal hybrid differentiation signatures in stem cell-derived hepatocyte-like cells

description: Additional file 5.
DOI: 10.6084/m9.figshare.30302586.v1
title: Additional file 5 of Elimination of CDX2 restricts intestinal hybrid differentiation signatures in stem cell-derived hepatocyte-like cells

description: Additional file 5.
DOI: 10.6084/m9.figshare.30302589
title: Additional file 6 of Elimination of CDX2 restricts intestinal hybrid differentiation signatures in stem cell-derived hepatocyte-like cells

description: Additional file 6.
DOI: 10.6084/m9.figshare.30302589.v1
title: Additional file 6 of Elimination of CDX2 restricts intestinal hybrid differentiation signatures in stem cell-derived hepatocyte-like cells

description: Additional file 6.
DOI: 10.6084/m9.figshare.30302592
title: Additional file 7 of Elimination of CDX2 restricts intestinal hybrid differentiation signatures in stem cell-derived hepatocyte-like cells

description: Additional file 7.
DOI: 10.6084/m9.figshare.30302592.v1
title: Additional file 7 of Elimination of CDX2 restricts intestinal hybrid differentiation signatures in stem cell-derived hepatocyte-like cells

description: Additional file 7.
DOI: 10.6084/m9.figshare.30302593
title: Additional file 1 of Selective sweeps for mutations increasing height impede identification of causative mutations for fertility and other correlated traits in cattle

description: Additional file 1: Table S1. The significant SNPs identified for various traits: Body Condition Score (BCS), height, weight, and heifer puberty. A total of 114, 6,405, 1,683, and 4,142 significant SNPs were found for each trait, respectively, with a significance threshold of P &lt; 1 × 10–9. Table S2. Correlations calculated using signed t-values of candidate QTLs associated with corresponding gene expression and various phenotypic traits. T-values represent the ratio of the effect size to the standard error (a measure of variability or uncertainty in the estimate of the effect size) obtained from eQTL analysis or GWAS analysis.
DOI: 10.6084/m9.figshare.30302593.v1
title: Additional file 1 of Selective sweeps for mutations increasing height impede identification of causative mutations for fertility and other correlated traits in cattle

description: Additional file 1: Table S1. The significant SNPs identified for various traits: Body Condition Score (BCS), height, weight, and heifer puberty. A total of 114, 6,405, 1,683, and 4,142 significant SNPs were found for each trait, respectively, with a significance threshold of P &lt; 1 × 10–9. Table S2. Correlations calculated using signed t-values of candidate QTLs associated with corresponding gene expression and various phenotypic traits. T-values represent the ratio of the effect size to the standard error (a measure of variability or uncertainty in the estimate of the effect size) obtained from eQTL analysis or GWAS analysis.
DOI: 10.6084/m9.figshare.30302599
title: Additional file 3 of Selective sweeps for mutations increasing height impede identification of causative mutations for fertility and other correlated traits in cattle

description: Additional file 3: Table S1. Most associated Single Nucleotide Polymorphism (SNP) per chromosome for each trait, as identified through single-trait GWAS analysis. Table S2. Most significant Single Nucleotide Polymorphism (SNP) positions per chromosome identified through multi-trait GWAS (M-GWAS) analysis (p-value &lt; 1 × 10⁻⁹), along with the corresponding signed t-values (calculated as effect size divided by standard error) from single-trait GWAS analyses. Table S3. Significant Single Nucleotide Polymorphisms (SNPs) associated with gene expression (Forutan et al., 2024) and studied traits (i.e. Height, BCS, Weight, Heifer puberty), along with their potential regulatory effects on nearby genes. Table S4. The correlation between candidate quantitative trait loci (QTLs) across four traits including, body condition score (BCS), weight, height, and heifer puberty. The correlation were calculated based on SNP effect size obtained from single-trait GWAS analysis for each trait. Table S5. Effects of the candidate quantitative trait loci (QTLs) on four different traits as estimated from the original single-trait genome-wide association study (GWAS). Table S6. Pearson Correlation between each pair of traits calculated over the effects of nine candidate quantitative trait loci (QTLs) located on chromosomes 5, 6, and 14, estimated using single-trait GWAS analysis.
DOI: 10.6084/m9.figshare.30302599.v1
title: Additional file 3 of Selective sweeps for mutations increasing height impede identification of causative mutations for fertility and other correlated traits in cattle

description: Additional file 3: Table S1. Most associated Single Nucleotide Polymorphism (SNP) per chromosome for each trait, as identified through single-trait GWAS analysis. Table S2. Most significant Single Nucleotide Polymorphism (SNP) positions per chromosome identified through multi-trait GWAS (M-GWAS) analysis (p-value &lt; 1 × 10⁻⁹), along with the corresponding signed t-values (calculated as effect size divided by standard error) from single-trait GWAS analyses. Table S3. Significant Single Nucleotide Polymorphisms (SNPs) associated with gene expression (Forutan et al., 2024) and studied traits (i.e. Height, BCS, Weight, Heifer puberty), along with their potential regulatory effects on nearby genes. Table S4. The correlation between candidate quantitative trait loci (QTLs) across four traits including, body condition score (BCS), weight, height, and heifer puberty. The correlation were calculated based on SNP effect size obtained from single-trait GWAS analysis for each trait. Table S5. Effects of the candidate quantitative trait loci (QTLs) on four different traits as estimated from the original single-trait genome-wide association study (GWAS). Table S6. Pearson Correlation between each pair of traits calculated over the effects of nine candidate quantitative trait loci (QTLs) located on chromosomes 5, 6, and 14, estimated using single-trait GWAS analysis.
DOI: 10.82144/a3860fd4
title: Costa Rica Dome Expedition April 2017 (aggregated per 1-degree cell)

description: Original provider:
NOAA Fisheries, Pacific Islands Fisheries Science Center

Dataset credits:
Data provider
Fisheries Bycatch Research Group
Originating data center
&lt;a href='http://www.seaturtle.org/tracking/' target='_blank'&gt;Satellite Tracking and Analysis Tool (STAT)&lt;/a&gt;
Project partner
Partners include NOAA Fisheries, Pacific Islands Fisheries Science Center, Mission Blue, and MarViva

Abstract:
This March 2017 expedition set about to track the movements of sea turtles, sharks and marine mammals in the region of the Costa Rica Thermal Dome.
 This dataset is a summarized representation of the telemetry locations aggregated per species per 1-degree cell.
DOI: 10.6084/m9.figshare.30302610.v1
title: Additional file 1 of Overexpression of CCK Neuropeptide in brain is linked to ZBTB20 mutations: potential diagnostic relevance in glioblastoma

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.30302610
title: Additional file 1 of Overexpression of CCK Neuropeptide in brain is linked to ZBTB20 mutations: potential diagnostic relevance in glioblastoma

description: Supplementary Material 1.
DOI: 10.82144/27e19ef7
title: UNCW Norfolk Canyon Aerial Survey - Right side - 2016

description: Original provider:
University of North Carolina, Wilmington

Dataset credits:
William A. McLellan, University of North Carolina Wilmington
DOI: 10.6084/m9.figshare.30302631
title: Additional file 4 of Effects of glucocorticoid receptor activation on gene expression and antiviral responses in Atlantic salmon (Salmo salar L.) red blood cells

description: Additional file 4 Transcriptional responses of RBCs to 100 μM dexamethasone. The lists of all upregulated DEGs in response to dexamethasone.
DOI: 10.6084/m9.figshare.30302631.v1
title: Additional file 4 of Effects of glucocorticoid receptor activation on gene expression and antiviral responses in Atlantic salmon (Salmo salar L.) red blood cells

description: Additional file 4 Transcriptional responses of RBCs to 100 μM dexamethasone. The lists of all upregulated DEGs in response to dexamethasone.
DOI: 10.6084/m9.figshare.30302634
title: Additional file 5 of Effects of glucocorticoid receptor activation on gene expression and antiviral responses in Atlantic salmon (Salmo salar L.) red blood cells

description: Additional file 5 Transcriptional responses of RBCs to 100 μM dexamethasone. The lists of all downregulated DEGs in response to dexamethasone.
DOI: 10.6084/m9.figshare.30302634.v1
title: Additional file 5 of Effects of glucocorticoid receptor activation on gene expression and antiviral responses in Atlantic salmon (Salmo salar L.) red blood cells

description: Additional file 5 Transcriptional responses of RBCs to 100 μM dexamethasone. The lists of all downregulated DEGs in response to dexamethasone.
DOI: 10.6084/m9.figshare.30302637
title: Additional file 6 of Effects of glucocorticoid receptor activation on gene expression and antiviral responses in Atlantic salmon (Salmo salar L.) red blood cells

description: Additional file 6 Transcriptional responses of whole blood cells to cortisol. The lists of all upregulated DEGs in response to cortisol, two days post-injection.
DOI: 10.6084/m9.figshare.30302637.v1
title: Additional file 6 of Effects of glucocorticoid receptor activation on gene expression and antiviral responses in Atlantic salmon (Salmo salar L.) red blood cells

description: Additional file 6 Transcriptional responses of whole blood cells to cortisol. The lists of all upregulated DEGs in response to cortisol, two days post-injection.
DOI: 10.6084/m9.figshare.30302640
title: Additional file 7 of Effects of glucocorticoid receptor activation on gene expression and antiviral responses in Atlantic salmon (Salmo salar L.) red blood cells

description: Additional file 7 Transcriptional responses of whole blood cells to cortisol. The lists of all downregulated DEGs in response to cortisol, two days post-injection.
DOI: 10.6084/m9.figshare.30302640.v1
title: Additional file 7 of Effects of glucocorticoid receptor activation on gene expression and antiviral responses in Atlantic salmon (Salmo salar L.) red blood cells

description: Additional file 7 Transcriptional responses of whole blood cells to cortisol. The lists of all downregulated DEGs in response to cortisol, two days post-injection.
DOI: 10.6084/m9.figshare.30302643
title: Additional file 8 of Effects of glucocorticoid receptor activation on gene expression and antiviral responses in Atlantic salmon (Salmo salar L.) red blood cells

description: Additional file 8 Transcriptional responses of whole blood cells to cortisol. The lists of all upregulated DEGs in response to cortisol, four days post-injection.
DOI: 10.6084/m9.figshare.30302643.v1
title: Additional file 8 of Effects of glucocorticoid receptor activation on gene expression and antiviral responses in Atlantic salmon (Salmo salar L.) red blood cells

description: Additional file 8 Transcriptional responses of whole blood cells to cortisol. The lists of all upregulated DEGs in response to cortisol, four days post-injection.
DOI: 10.6084/m9.figshare.30302646
title: Additional file 9 of Effects of glucocorticoid receptor activation on gene expression and antiviral responses in Atlantic salmon (Salmo salar L.) red blood cells

description: Additional file 9 Transcriptional responses of whole blood cells to cortisol. The lists of all downregulated DEGs in response to cortisol, four days post-injection.
DOI: 10.6084/m9.figshare.30302646.v1
title: Additional file 9 of Effects of glucocorticoid receptor activation on gene expression and antiviral responses in Atlantic salmon (Salmo salar L.) red blood cells

description: Additional file 9 Transcriptional responses of whole blood cells to cortisol. The lists of all downregulated DEGs in response to cortisol, four days post-injection.
DOI: 10.82144/a975cf03
title: Northern Elephant Seals Post-Molting 2017 Guadalupe Island, Mexico (aggregated per 1-degree cell)

description: Original provider:
Sarah Kienle

Dataset credits:
Data provider
Costa Lab Mammals
Originating data center
&lt;a href='http://www.seaturtle.org/tracking/' target='_blank'&gt;Satellite Tracking and Analysis Tool (STAT)&lt;/a&gt;
 This dataset is a summarized representation of the telemetry locations aggregated per species per 1-degree cell.
DOI: 10.6084/m9.figshare.30302667
title: Additional file 1 of Long-term patient-derived ovarian cancer organoids closely recapitulate tumor of origin and clinical response

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30302667.v1
title: Additional file 1 of Long-term patient-derived ovarian cancer organoids closely recapitulate tumor of origin and clinical response

description: Supplementary Material 1
DOI: 10.82144/f1bfe4d0
title: Juvenile loggerhead use of the Gulf Stream off Cape Hatteras, NC (aggregated per 1-degree cell)

description: Original provider:
North Carolina Renewable Ocean Energy Program

Dataset credits:
Data provider
North Carolina Renewable Ocean Energy Program
Originating data center
&lt;a href='http://www.seaturtle.org/tracking/' target='_blank'&gt;Satellite Tracking and Analysis Tool (STAT)&lt;/a&gt;
Project partner
This project is the result of collaboration between the Protected Resources Branch of the National Oceanic and Atmospheric Administration Beaufort Laboratory, the UNC Coastal Studies Institute, the North Carolina Aquariums at Pine Knoll Shores and Roanoke Island, and University of Central Florida. &lt;br&gt;
Project sponsor or sponsor description
The tagging and tracking of sea turtles in the Gulf Stream off the North Carolina coast is funded by the North Carolina Renewable Ocean Energy Program.

Abstract:
Researchers from NOAA, National Marine Fisheries Service and the UNC Coastal Studies Institute are investigating the use of Gulf Stream waters by sea turtles. We tagged five loggerhead sea turtles that were collected from North Carolina nests and raised in captivity, at the Pine Knoll Shores Aquarium. The turtles were tagged with solar-powered satellite transmitters (Microwave Telemetry) at the Roanoke Island Aquarium under the guidance of Dr. Kate Mansfield, who did a study upon which ours was based (Mansfield et al. 2014). The tagged turtles were released in Sargassum mats in the Gulf Stream off the coast of North Carolina.
 This dataset is a summarized representation of the telemetry locations aggregated per species per 1-degree cell.
DOI: 10.6084/m9.figshare.30302692
title: Additional file 17 of Cancer-associated fibroblast-derived circKLHL24 drives perineural invasion in pancreatic cancer via dual regulation of the sec31a-CXCL12 axis

description: Supplementary Material 17
DOI: 10.6084/m9.figshare.30302692.v1
title: Additional file 17 of Cancer-associated fibroblast-derived circKLHL24 drives perineural invasion in pancreatic cancer via dual regulation of the sec31a-CXCL12 axis

description: Supplementary Material 17
DOI: 10.6084/m9.figshare.30302728
title: Additional file 2 of Comparative analysis of Chinese classical prescriptions and global traditional polyherbal formulations: insights from the database of global polyherbal formulation (GPFD)

description: Additional file 2.
DOI: 10.6084/m9.figshare.30302728.v1
title: Additional file 2 of Comparative analysis of Chinese classical prescriptions and global traditional polyherbal formulations: insights from the database of global polyherbal formulation (GPFD)

description: Additional file 2.
DOI: 10.82144/24faf8de
title: Northern elephant seals post-molting 2017 (aggregated per 1-degree cell)

description: Original provider:
Dan Costa

Dataset credits:
Data provider
Costa Lab Mammals
Originating data center
&lt;a href='http://www.seaturtle.org/tracking/' target='_blank'&gt;Satellite Tracking and Analysis Tool (STAT)&lt;/a&gt;
 This dataset is a summarized representation of the telemetry locations aggregated per species per 1-degree cell.
DOI: 10.82144/6842165d
title: Tracking rehabilitated green turtles from Mabul Island, Sabah, Malaysia (aggregated per 1-degree cell)

description: Original provider:
Marine Research Foundation

Dataset credits:
Data provider
Marine Research Foundation - Marine Turtle Programme
Originating data center
&lt;a href='http://www.seaturtle.org/tracking/' target='_blank'&gt;Satellite Tracking and Analysis Tool (STAT)&lt;/a&gt;
Project partner
Rehabilitation of sea turtles in Sabah falls under the jurisdiction of the Sabah Wildlife Department, through their Wildlife Rescue Unit (WRU). Facilities for rehabilitation are generously provided by Scuba Junkie Dive Resort on Mabul Island, which has a hatchery for safely rearing eggs and three tanks for holding the rehabilitating turtles. The Marine Research Foundation conducts research on the biology and ecology of sea turtles across many sites in the Indo Pacific region, and provides the equipment, along with technical and scientific input to this tracking project.

Abstract:
This tracking project aims to determine the behaviour and movements of rehabilitated juvenile green sea turtles, which were brought to the Scuba Junkie rehabilitation center on Mabul Island, and cared for under the careful supervision by the Sabah Wildlife Department veterinarians.
 This dataset is a summarized representation of the telemetry locations aggregated per species per 1-degree cell.
DOI: 10.6084/m9.figshare.30302709
title: Additional file 1 of DEP domain containing 1: a potential oncogenic driver

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30302709.v1
title: Additional file 1 of DEP domain containing 1: a potential oncogenic driver

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30302724
title: Additional file 2 of DEP domain containing 1: a potential oncogenic driver

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30302724.v1
title: Additional file 2 of DEP domain containing 1: a potential oncogenic driver

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30302727
title: Additional file 3 of DEP domain containing 1: a potential oncogenic driver

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.30302727.v1
title: Additional file 3 of DEP domain containing 1: a potential oncogenic driver

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.30302736
title: Additional file 4 of DEP domain containing 1: a potential oncogenic driver

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.30302736.v1
title: Additional file 4 of DEP domain containing 1: a potential oncogenic driver

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.30302739
title: Additional file 5 of DEP domain containing 1: a potential oncogenic driver

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.30302739.v1
title: Additional file 5 of DEP domain containing 1: a potential oncogenic driver

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.30302742
title: Additional file 6 of DEP domain containing 1: a potential oncogenic driver

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.30302742.v1
title: Additional file 6 of DEP domain containing 1: a potential oncogenic driver

description: Supplementary Material 6
DOI: 10.82144/b99eff63
title: MIRC KB17 Vessel Surveys Mar 2012

description: Original provider:
HDR Environmental, Operations and Construction, Inc.

Dataset credits:
The U.S. Navy Marine Species Monitoring Program

Abstract:
Features in this feature class represent vessel sightings during the Guam and Saipan Marine Species Monitoring: Winter-Spring Survey conducted from 15 to 29 March 2012.
DOI: 10.6084/m9.figshare.30302799
title: Additional file 2 of High-precision cell-type mapping and annotation of single-cell spatial transcriptomics with STAMapper

description: Additional file 2: Tables S3. Running time and peak memory cost of STAMapper and competing methods.
DOI: 10.6084/m9.figshare.30302799.v1
title: Additional file 2 of High-precision cell-type mapping and annotation of single-cell spatial transcriptomics with STAMapper

description: Additional file 2: Tables S3. Running time and peak memory cost of STAMapper and competing methods.
DOI: 10.82144/4681be74
title: MIRC NAVFAC Incidental Sightings - Vessel 1965-2014

description: Original provider:
HDR Environmental, Operations and Construction, Inc.

Dataset credits:
The U.S. Navy Marine Species Monitoring Program

Abstract:
Features in this feature class represent incidental sightings from vessels between 1965 and 2014.
DOI: 10.6084/m9.figshare.30302800
title: Additional file 1 of Structural and evolutionary features of red algal UV sex chromosomes

description: Additional file 1: Table S1–S15. Table S1. Data used in this study, published in (Lipinska et al. 2023). Table S2. Gracilaria female genomes assembly statistics. Table S3. Sex-linked scaffolds/genomic regions per species. Table S4. Repeat content, coding sequence and GC content in sex-linked scaffolds. Table S5. Characteristics of sex-linked genes. Table S6. Synonymous (KS) and non-synonymous (KN) divergence between PAR and autosomal genes in G. vermiculophylla (PAML4, codeml) including evolutionary gene ages calculated using GenEra. Table S7. Distribution of gene ages on autosomes and sex chromosome in G. vermiculophylla (pseudoautosomal region (PAR) and male sex-determining region (VSDR), showing depletion of ‘young’ genes (Rank 5) on the PAR compared to autosomes. Table S8. Gene orthology analysis across the four Gracilaria species, highlighting the orthogroups containing sex-linked genes (blue—V-SDR genes, red—U-SDR genes). Table S9. Expression of SDR genes and their autosomal paralogs (log2(TPM + 1). Table S10. Synonymous (KS) and non-synonymous (KN) divergence between gametologs per species (PAML4, codeml). Table S11. Sex-biased gene expression (transcriptos per million, TPM) in Gracilaria species. Table S12. Functional enrichment analysis of GO-terms among sex-biased genes. Table S13. Distribution of sex-biased genes on the chromosomes of G. vermiculophylla. Table S14. KN/KS analysis of sex-biased and unbiased genes in Gracilaria species. Table S15. PCR primers used for experimental validation of sex linkage.