cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8bzh39
title: Occurrence Download

description: A dataset containing 1099 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Anadara similis (C.B.Adams, 1852))"
 ]
}

 The dataset includes 1099 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0284438-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xc3ceg
title: Occurrence Download

description: A dataset containing 595 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Otocolobus manul (Pallas, 1776)"
 ]
}

 The dataset includes 595 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0173279-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyz8th
title: Occurrence Download

description: A dataset containing 7136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lanius excubitor Linnaeus, 1758",
 "DatasetKey is Observation.org, Nature data from around the World",
 "Country is one of (Germany, France, Spain, Portugal, Denmark, Austria, Italy, Switzerland, Greece, Poland, Hungary, Slovenia, Sweden, Norway, Slovakia, Montenegro, Croatia, North Macedonia, Serbia, Iceland, Ireland, United Kingdom of Great Britain and Northern Ireland, Albania, Bosnia and Herzegovina, Bulgaria)"
 ]
}

 The dataset includes 7136 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154916-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.82dfpf
title: Occurrence Download

description: A dataset containing 510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "MediaType is Image",
 "TaxonKey is Phylloscopus trochilus (Linnaeus, 1758)"
 ]
}

 The dataset includes 510 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0173299-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kh7y9
title: Occurrence Download

description: A dataset containing 61803 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kenya",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arthropoda",
 "Year 2010-2021"
 ]
}

 The dataset includes 61803 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0173594-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qcg3hn
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Noccaea tatianae (Bordz.) F.K.Mey."
 ]
}

 The dataset includes 12 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154948-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnzrc4
title: Occurrence Download

description: A dataset containing 199 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Odocoileus virginianus (Zimmermann, 1780))",
 "StateProvince ~casanare"
 ]
 }
 ]
}

 The dataset includes 199 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0173281-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sr42qq
title: Occurrence Download

description: A dataset containing 27223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((2.16524 51.43206,12.08859 51.43206,12.08859 56.56430,2.16524 56.56430,2.16524 51.43206))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Clupea harengus Linnaeus, 1758"
 ]
}

 The dataset includes 27223 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0243473-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3v9df
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Adelophryne baturitensis Hoogmoed, Borges & Cascon, 1994"
 ]
}

 The dataset includes 31 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0173302-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4w86zr
title: Occurrence Download

description: A dataset containing 2207 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panax japonicus (T.Nees) C.A.Mey."
 ]
}

 The dataset includes 2207 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0243510-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sye8qk
title: Occurrence Download

description: A dataset containing 4685 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Registros biológicos de especies de fauna vertebrada terrestre en las centrales de San Carlos y Jaguas - 2006"
 ]
}

 The dataset includes 4685 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154934-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w858kp
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mesoplodon carlhubbsi Moore, 1963",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186154-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vwmcqk
title: Occurrence Download

description: A dataset containing 20937 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heteromeles M.Roem."
 ]
}

 The dataset includes 20937 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241430-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nn4qfc
title: Occurrence Download

description: A dataset containing 281130 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Juncus bufonius L."
 ]
}

 The dataset includes 281130 records from 1415 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0243514-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14283922
title: Test dataset for https://github.com/paulsengroup/StripePy

description: Test and demo datasets for StripePy (https://github.com/paulsengroup/StripePy). 

Original datasets were downloaded from the 4DNucleome Data Portal and ENCODE. Then, the mcool files downloaded from the 4DNucleome were fixed using hictk fix-mcool. Finally, the Hi-C matrix files were minified by removing trans-interactions and cis-interactions outside a 5-Mb band around the diagonal. This was automated using script generate_test_matrix.py from folder test/scripts in the paulsengroup/StripePy repository. The minified files in mcool format were converted to hic format using hictk convert.

The result file results_4DNFI9GMP2J8_v1.hdf5 was generated using stripepy 0.1.dev243+g88c33bb with the following command: stripepy call 4DNFI9GMP2J8.fixed.mcool 10000 --glob-pers-min 0.05 --loc-pers-min 0.33 --loc-trend-min 0.25
DOI: 10.5281/zenodo.14510452
title: Test dataset for https://github.com/paulsengroup/StripePy

description: Test and demo datasets for StripePy (https://github.com/paulsengroup/StripePy). 

Original datasets were downloaded from the 4DNucleome Data Portal and ENCODE. Then, the mcool files downloaded from the 4DNucleome were fixed using hictk fix-mcool. Finally, the Hi-C matrix files were minified by removing trans-interactions and cis-interactions outside a 5-Mb band around the diagonal. This was automated using script generate_test_matrix.py from folder test/scripts in the paulsengroup/StripePy repository. The minified files in mcool format were converted to hic format using hictk convert.

The result file results_4DNFI9GMP2J8_v1.hdf5 was generated using stripepy 0.1.dev243+g88c33bb with the following command: stripepy call 4DNFI9GMP2J8.fixed.mcool 10000 --glob-pers-min 0.05 --loc-pers-min 0.33 --loc-trend-min 0.25
DOI: 10.5281/zenodo.14517632
title: Test dataset for https://github.com/paulsengroup/StripePy

description: Test and demo datasets for StripePy (https://github.com/paulsengroup/StripePy). 

Original datasets were downloaded from the 4DNucleome Data Portal and ENCODE. Then, the mcool files downloaded from the 4DNucleome were fixed using hictk fix-mcool. Finally, the Hi-C matrix files were minified by removing trans-interactions and cis-interactions outside a 5-Mb band around the diagonal. This was automated using script generate_test_matrix.py from folder test/scripts in the paulsengroup/StripePy repository. The minified files in mcool format were converted to hic format using hictk convert.

The result file results_4DNFI9GMP2J8_v1.hdf5 was generated using stripepy 0.1.dev243+g88c33bb with the following command: stripepy call 4DNFI9GMP2J8.fixed.mcool 10000 --glob-pers-min 0.05 --loc-pers-min 0.33 --loc-trend-min 0.25
DOI: 10.5281/zenodo.14609094
title: Test dataset for https://github.com/paulsengroup/StripePy

description: Test and demo datasets for StripePy (https://github.com/paulsengroup/StripePy). 

Original datasets were downloaded from the 4DNucleome Data Portal and ENCODE. Then, the mcool files downloaded from the 4DNucleome were fixed using hictk fix-mcool. Finally, the Hi-C matrix files were minified by removing trans-interactions and cis-interactions outside a 5-Mb band around the diagonal. This was automated using script generate_test_matrix.py from folder test/scripts in the paulsengroup/StripePy repository. The minified files in mcool format were converted to hic format using hictk convert.

The result file results_4DNFI9GMP2J8_v1.hdf5 was generated using stripepy 0.1.dev243+g88c33bb with the following command: stripepy call 4DNFI9GMP2J8.stripepy.mcool 10000 --glob-pers-min 0.05 --loc-pers-min 0.33 --loc-trend-min 0.25
DOI: 10.5281/zenodo.14616548
title: Test dataset for https://github.com/paulsengroup/StripePy

description: Test and demo datasets for StripePy (https://github.com/paulsengroup/StripePy). 

Original datasets were downloaded from the 4DNucleome Data Portal and ENCODE. Then, the mcool files downloaded from the 4DNucleome were fixed using hictk fix-mcool. Finally, the Hi-C matrix files were minified by removing trans-interactions and cis-interactions outside a 5-Mb band around the diagonal. This was automated using script generate_test_matrix.py from folder test/scripts in the paulsengroup/StripePy repository. The minified files in mcool format were converted to hic format using hictk convert.

The result file results_4DNFI9GMP2J8_v1.hdf5 was generated using stripepy 0.1.dev243+g88c33bb with the following command: stripepy call 4DNFI9GMP2J8.stripepy.mcool 10000 --glob-pers-min 0.05 --loc-pers-min 0.33 --loc-trend-min 0.25
DOI: 10.5281/zenodo.14762415
title: Test dataset for https://github.com/paulsengroup/StripePy

description: Test and demo datasets for StripePy (https://github.com/paulsengroup/StripePy). 

Original datasets were downloaded from the 4DNucleome Data Portal and ENCODE. Then, the mcool files downloaded from the 4DNucleome were fixed using hictk fix-mcool. Finally, the Hi-C matrix files were minified by removing trans-interactions and cis-interactions outside a 5-Mb band around the diagonal. This was automated using script generate_test_matrix.py from folder test/scripts in the paulsengroup/StripePy repository. The minified files in mcool format were converted to hic format using hictk convert.

The result file results_4DNFI9GMP2J8_v1.hdf5 was generated using stripepy 0.1.dev243+g88c33bb with the following command: stripepy call 4DNFI9GMP2J8.stripepy.mcool 10000 --glob-pers-min 0.05 --loc-pers-min 0.33 --loc-trend-min 0.25
DOI: 10.5281/zenodo.14921616
title: Test dataset for https://github.com/paulsengroup/StripePy

description: Test and demo datasets for StripePy (https://github.com/paulsengroup/StripePy). 

Original datasets were downloaded from the 4DNucleome Data Portal and ENCODE. Then, the mcool files downloaded from the 4DNucleome were fixed using hictk fix-mcool. Finally, the Hi-C matrix files were minified by removing trans-interactions and cis-interactions outside a 5-Mb band around the diagonal. This was automated using script generate_test_matrix.py from folder test/scripts in the paulsengroup/StripePy repository. The minified files in mcool format were converted to hic format using hictk convert.

The result file results_4DNFI9GMP2J8_v1.hdf5 was generated using stripepy 0.1.dev243+g88c33bb with the following command: stripepy call 4DNFI9GMP2J8.stripepy.mcool 10000 --glob-pers-min 0.05 --loc-pers-min 0.33 --loc-trend-min 0.25
DOI: 10.5281/zenodo.15300426
title: Test dataset for https://github.com/paulsengroup/StripePy

description: Test and demo datasets for StripePy (https://github.com/paulsengroup/StripePy). 

Original datasets were downloaded from the 4DNucleome Data Portal and ENCODE. Then, the mcool files downloaded from the 4DNucleome were fixed using hictk fix-mcool. Finally, the Hi-C matrix files were minified by removing trans-interactions and cis-interactions outside a 5-Mb band around the diagonal. This was automated using script generate_test_matrix.py from folder test/scripts in the paulsengroup/StripePy repository. The minified files in mcool format were converted to hic format using hictk convert.

The result file results_4DNFI9GMP2J8_v1.hdf5 was generated using stripepy 0.1.dev243+g88c33bb with the following command: stripepy call 4DNFI9GMP2J8.stripepy.mcool 10000 --glob-pers-min 0.05 --loc-pers-min 0.33 --loc-trend-min 0.25
DOI: 10.5281/zenodo.15301784
title: Test dataset for https://github.com/paulsengroup/StripePy

description: Test and demo datasets for StripePy (https://github.com/paulsengroup/StripePy). 

Original datasets were downloaded from the 4DNucleome Data Portal and ENCODE. Then, the mcool files downloaded from the 4DNucleome were fixed using hictk fix-mcool. Finally, the Hi-C matrix files were minified by removing trans-interactions and cis-interactions outside a 5-Mb band around the diagonal. This was automated using script generate_test_matrix.py from folder test/scripts in the paulsengroup/StripePy repository. The minified files in mcool format were converted to hic format using hictk convert.

The result file results_4DNFI9GMP2J8_v1.hdf5 was generated using stripepy 0.1.dev243+g88c33bb with the following command: stripepy call 4DNFI9GMP2J8.stripepy.mcool 10000 --glob-pers-min 0.05 --loc-pers-min 0.33 --loc-trend-min 0.25
DOI: 10.5281/zenodo.14609227
title: Test dataset for https://github.com/paulsengroup/StripePy

description: Test and demo datasets for StripePy (https://github.com/paulsengroup/StripePy). 

Original datasets were downloaded from the 4DNucleome Data Portal and ENCODE. Then, the mcool files downloaded from the 4DNucleome were fixed using hictk fix-mcool. Finally, the Hi-C matrix files were minified by removing trans-interactions and cis-interactions outside a 5-Mb band around the diagonal. This was automated using script generate_test_matrix.py from folder test/scripts in the paulsengroup/StripePy repository. The minified files in mcool format were converted to hic format using hictk convert.

The result file results_4DNFI9GMP2J8_v1.hdf5 was generated using stripepy 0.1.dev243+g88c33bb with the following command: stripepy call 4DNFI9GMP2J8.stripepy.mcool 10000 --glob-pers-min 0.05 --loc-pers-min 0.33 --loc-trend-min 0.25
DOI: 10.5281/zenodo.14638947
title: Test dataset for https://github.com/paulsengroup/StripePy

description: Test and demo datasets for StripePy (https://github.com/paulsengroup/StripePy). 

Original datasets were downloaded from the 4DNucleome Data Portal and ENCODE. Then, the mcool files downloaded from the 4DNucleome were fixed using hictk fix-mcool. Finally, the Hi-C matrix files were minified by removing trans-interactions and cis-interactions outside a 5-Mb band around the diagonal. This was automated using script generate_test_matrix.py from folder test/scripts in the paulsengroup/StripePy repository. The minified files in mcool format were converted to hic format using hictk convert.

The result file results_4DNFI9GMP2J8_v1.hdf5 was generated using stripepy 0.1.dev243+g88c33bb with the following command: stripepy call 4DNFI9GMP2J8.stripepy.mcool 10000 --glob-pers-min 0.05 --loc-pers-min 0.33 --loc-trend-min 0.25
DOI: 10.5281/zenodo.14643417
title: Test dataset for https://github.com/paulsengroup/StripePy

description: Test and demo datasets for StripePy (https://github.com/paulsengroup/StripePy). 

Original datasets were downloaded from the 4DNucleome Data Portal and ENCODE. Then, the mcool files downloaded from the 4DNucleome were fixed using hictk fix-mcool. Finally, the Hi-C matrix files were minified by removing trans-interactions and cis-interactions outside a 5-Mb band around the diagonal. This was automated using script generate_test_matrix.py from folder test/scripts in the paulsengroup/StripePy repository. The minified files in mcool format were converted to hic format using hictk convert.

The result file results_4DNFI9GMP2J8_v1.hdf5 was generated using stripepy 0.1.dev243+g88c33bb with the following command: stripepy call 4DNFI9GMP2J8.stripepy.mcool 10000 --glob-pers-min 0.05 --loc-pers-min 0.33 --loc-trend-min 0.25
DOI: 10.15468/dl.qegb9t
title: Occurrence Download

description: A dataset containing 2073 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Plethodon ouachitae Dunn & Heinze, 1933)"
 ]
}

 The dataset includes 2073 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004220-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.34cqha
title: Occurrence Download

description: A dataset containing 1293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Delphinium yui M.Idrees & Z.Y.Zhang, 2023, Delphinium ×barlowii Lindl., Descurainia sophia subsp. sophia, Desmodium guianense DC., Diabelia serrata (Siebold & Zucc.) Landrein)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1293 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004223-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id299321.1
title: StrainInfo SI-ID 299321.1

description: StrainInfo dataset 299321 about a strain of Bicornispora exophiala. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id299386.1
title: StrainInfo SI-ID 299386.1

description: StrainInfo dataset 299386 about a strain of Lyophyllum shimeji. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id299387.1
title: StrainInfo SI-ID 299387.1

description: StrainInfo dataset 299387 about a strain of Saccharomyces cerevisiae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.drhwol
title: Occurrence Download

description: A dataset containing 1569428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-84.7806 35.12327,-83.0066 35.12401,-83.00983 36.68149,-84.79669 36.69626,-84.7806 35.12327))",
 "HasCoordinate is true",
 "TaxonKey is Aves",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1569428 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000072-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id299388.1
title: StrainInfo SI-ID 299388.1

description: StrainInfo dataset 299388 about a strain of Saccharomyces cerevisiae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id299389.1
title: StrainInfo SI-ID 299389.1

description: StrainInfo dataset 299389 about a strain of Saccharomyces cerevisiae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id299439.1
title: StrainInfo SI-ID 299439.1

description: StrainInfo dataset 299439 about a strain of Aureobasidium pullulans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.gax23d
title: Occurrence Download

description: A dataset containing 547 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Micrurus corallinus (Merrem, 1820)"
 ]
}

 The dataset includes 547 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064581-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id299440.1
title: StrainInfo SI-ID 299440.1

description: StrainInfo dataset 299440 about a strain of Kazachstania lodderae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.