cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.7ng3j/1
title: Field experiment data

description: Data from the end of a 11-month field experiment examining the effects of Spartina alterniflora genotypic diversity and trait diversity on marsh plant and community responses.  The file includes data on plant and associated species responses as well as environmental variables.
DOI: 10.5061/dryad.7ng3j/2
title: Field experiment repeated measures data

description: This file includes data on the responses of the three most abundant macrofaunal species associated with Spartina alterniflora for each sampling date over the course of the 11-month field experiment.
DOI: 10.5061/dryad.83873/1
title: Perez-Rodriguez_et_al_2013_correl

description: This file contains the data used to analyse the relationship between bib size and FD and body condition and immunocompetence of red-legged partridges
DOI: 10.5061/dryad.8ff54/1
title: Data_Labeyrie2013_sorghum

description: Genotypes (18 SSRs) and panicles morphological description (15 qualitative descriptors) of 297 sorghum individuals collected in-situ on the eastern slope of Mount Kenya, Kenya.
DOI: 10.5061/dryad.923n7/2
title: Common-garden and EB trial data from 17 families of Lepeophtheirus salmonis

description: Background data and results for: 1. Production of families in single tanks, and 2: All individual lice sampled from a common-garden infection in four tanks and subsequently exposed to emamectin benzoate in a one-dose trial.
DOI: 10.5061/dryad.94jt2/1
title: Occam's Razor in sensorimotor learning - human trajectory data

description: The data-file contains recordings of human motion data that was acquired in a virtual reality setup. Participants of the experiment were controlling a virtual cursor using a 3D manipulandum in order to draw regression trajectories through clouds of noisy observations that were presented to them through a head mounted display. See corresponding publication and included Readme-file for details.
DOI: 10.5061/dryad.9c568/1
title: StadlerYang2012BDS.TipDate.OnlineSuppMat

description: Online supplementary text and figures S1-S7
DOI: 10.5061/dryad.b37h81h1/1
title: Egg production

description: Each row represents eggs laid by a group of fleas fed simultaneously on the same host.
DOI: 10.5061/dryad.b37h81h1/2
title: Pupation success

description: Each row represents a clutch of eggs laid at the same day by a group of females fed on the same host individual
DOI: 10.5061/dryad.b37h81h1/3
title: Emergence success

description: Each row represents a group of papae from the same clutch of eggs laid at the same day by a group of females fed on the same host individual
DOI: 10.5061/dryad.bc4sf.1/3.1
title: Thoropa taophora Genotypes, Body Size, & Gosner Stages
DOI: 10.5061/dryad.bc4sf.2/3.1
title: Thoropa taophora Genotypes, Body Size, & Gosner Stages
DOI: 10.5061/dryad.cv35b/4
title: SpermWhale_50nucSeqs_SNPdisco_Fasta

description: FASTA file of sperm whale nuclear loci for capture array design and sequence read assembly.
DOI: 10.5061/dryad.cv35b/5
title: Spinner-Spotted_85nuc_loci_Fasta

description: FASTA file of bottlenose dolphin nuclear loci for capture array design and sequence read assembly of spinner and spotted dolphins.
DOI: 10.5061/dryad.cv35b/6
title: BeakedWhale_array

description: eArray data files for capture array design
DOI: 10.5061/dryad.d2b14/1
title: DATA_host_compatibility
DOI: 10.5061/dryad.d2b14/2
title: DATA_host_availability
DOI: 10.5061/dryad.d2b14/3
title: DATA_genetics
DOI: 10.5061/dryad.db18t/2
title: Microsatellites genotypes for all individuals
DOI: 10.5061/dryad.dc8s8/1
title: COI_alignment_Aalbitarsis_Col

description: Fasta file corresponding to the alignment of forty COI haplotypes of Anopheles albitarsis s.l. from Colombia. Aligned using Needleman-Wunsch and Smith-W algorithm implemented in Geneious Pro 5.0.2 software
DOI: 10.5061/dryad.dc8s8/2
title: ITS2_alignment_Aalbirarsis_Col

description: Fasta file corresponding to the alignment of eight ITS2 haplotypes of Anopheles albitarsis s.l. from Colombia. Aligned using Needleman-Wunsch and Smith -W algorithm implemented in Geneious Pro 5.0.2 software
DOI: 10.5061/dryad.dc8s8/3
title: White_alignment_Aalbirarsis_Col

description: Fasta file corresponding to the alignment of partial white gene sequences of Anopheles albitarsis s.l. from Colombia. Aligned using Needleman-Wunsch and Smith -W algorithm implemented in Geneious Pro 5.0.2 softwar
DOI: 10.5061/dryad.dc8s8/4
title: LandmarkCoordinates_Aalbitarsis_Col

description: Excel file containing wing landmark coordinates (x, y) in millimeters, generated of thirteen landmarks digitized in the right wing of Anopheles albitarsis s.l. specimens from Colombia
DOI: 10.5061/dryad.dg899/1
title: dom_ref_orientalis_26SSR_structure

description: There are three files that we used for STRUCTURE analyses with the 26SSR markers that allowed us to detect hybrids and  to do the following intra-species TESS analyses. Each file include wild species individuals and 40 M. domestica reference (last 40 individuals in each input file): (1) dom_ref_orientalis_26SSR_structure: the M. orientalis samples followed by the 40 M. domestica reference (2) dom_ref_sieversii_26SSR_structure: the M. sieversii samples followed by the 40 M. domestica reference (3) dom_ref_sylvestris_26SSR_structure: the M.sylvestris samples followed by the 40 M. domestica reference
DOI: 10.5061/dryad.dg899/2
title: dom_ref_sieversii_26SSR_structure

description: There are three files that we used for STRUCTURE analyses with the 26SSR markers that allowed us to detect hybrids and  to do the following intra-species TESS analyses. Each file include wild species individuals and 40 M. domestica reference (last 40 individuals in each input file): (1) dom_ref_orientalis_26SSR_structure: the M. orientalis samples followed by the 40 M. domestica reference (2) dom_ref_sieversii_26SSR_structure: the M. sieversii samples followed by the 40 M. domestica reference (3) dom_ref_sylvestris_26SSR_structure: the M.sylvestris samples followed by the 40 M. domestica reference
DOI: 10.5061/dryad.dg899/3
title: dom_ref_sylvestris_26SSR_structure

description: There are three files that we used for STRUCTURE analyses with the 26SSR markers that allowed us to detect hybrids and  to do the following intra-species TESS analyses. Each file include wild species individuals and 40 M. domestica reference (last 40 individuals in each input file): (1) dom_ref_orientalis_26SSR_structure: the M. orientalis samples followed by the 40 M. domestica reference (2) dom_ref_sieversii_26SSR_structure: the M. sieversii samples followed by the 40 M. domestica reference (3) dom_ref_sylvestris_26SSR_structure: the M.sylvestris samples followed by the 40 M. domestica reference
DOI: 10.5061/dryad.dk412/1
title: Predicted decline in communication distance in 6 species of birds; Data used in meta-regression of frequency shifts in urban noise

description: Data collated from the published literature, file created using MS Word.  Column headings described in data file.  Sources: Hu & Cardoso (2009) Behavioral Ecology 20:1268-1273; Brackenbury (1979) Journal of Experimental Biology 78:163-166; Calder (1990) Ecology 71:1810-1816; Wood & Yezerinac (2006) The Auk 123:650-659; Parris & Schneider (2009) Ecology and Society 14(1):29; Fernandez-Juricic et al. (2005) Urban Habitats 3:49-69; Gross et al. (2010) American Naturalist 176:456-464; Potvin et al. (2011) Proceedings of the Royal Society B 278:2464-2469; Mockford & Marshall (2009) Proceedings of the Royal Society B 276:2979-2985; Slabbekoorn & Peet (2003) Nature 424:267; Slabbekoorn & den Boer-Visser (2006) Current Biology 16:2326-2331.
DOI: 10.5061/dryad.gk2vc/1
title: bowtie_alignments.tar

description: Alignments of RAD sequence reads to the reference genome, as produced by BOWTIE
DOI: 10.5061/dryad.gk2vc/2
title: RAD_markers.tar

description: RAD markers used in the population genomic analyses
DOI: 10.5061/dryad.j33k3/1
title: MEC-13-0399_DRYAD_worker genotypes

description: Genotypes at 7 microsatellite loci for army ant colony workers collected in and around Monteverde, Costa Rica.
DOI: 10.5061/dryad.j5925/1
title: 2008 - Phantom ROV Animal counts

description: Counts of animals in images captured by the Department of Fisheries and Oceans ROV Phantom
DOI: 10.5061/dryad.j5925/2
title: 2009 - DSC-Surveys

description: Analysis of images from the sponge reefs captured by the ROV ROPOS in 2009
DOI: 10.5061/dryad.j5925/3
title: GALIANO-ROPOS&PHANTOM

description: Reef area cover - analysis of images captured by both ROVs Phantom and ROPOS
DOI: 10.5061/dryad.j86v9/3
title: SAS Discriminant Analysis

description: SAS analyses Scripts
DOI: 10.5061/dryad.j86v9/6
title: Delta_P

description: Two of two input files for delta p analysis
DOI: 10.5061/dryad.j86v9/7
title: Script_Delta p

description: Script for delta p analysis (figure construction)
DOI: 10.5061/dryad.k9j15/1
title: Syt7 ms_eLIFE_Huisheng
DOI: 10.5061/dryad.m4f17/10
title: tpi

description: Raw '.asc' file of Topographic Position Index (TPI), calculated relative to the surrounding 90m using a 3-m resolution DEM
DOI: 10.5061/dryad.m4f17/11
title: twi

description: Raw '.asc' file of Topographic Wetness Index (TWI), calculated based on flow accumulation and solar exposure.
DOI: 10.5061/dryad.m4f17/12
title: PLAL_GenePop

description: GenePOP format of microsatellite genotype data
DOI: 10.5061/dryad.n8f46/1
title: harvey data

description: excel file of raw and pooled immunocytochemical data (gluA1 and GluA2 surface labelling) obtained in cultures hippocampal neurons treated with 50nM leptin for various time points (30 min to 180 min).
DOI: 10.5061/dryad.ps0f0/1
title: Food web data for the uppermost early Eocene Messel Shale
DOI: 10.5061/dryad.q405j/1
title: Puckett et al- Microsatellite Data

description: Data for 15 ursid microsatellites in 3-digit Genepop format.  Sample names identify where samples were collected; however, MZ refers to MO-Oz group in text of manuscript.
DOI: 10.5061/dryad.q405j/2
title: Puckett et al- DIYABC models

description: Three models for the three-population scenarios tested using DIYABC.  Priors for parameters are given in Table S2 of the manuscript.
DOI: 10.5061/dryad.q405j/3
title: Puckett et al-Haplotypes_w_AccessionNumbers

description: Fasta file with aligned Ursus americanus haplotypes (HapA-HapZ) with both haplotype and GenBank accession numbers.
DOI: 10.5061/dryad.q405j/4
title: Puckett et al-Samples_w_mtDNA_Haplotype_List

description: File includes the list of samples and the mitochondrial haplotype sequenced from each sample.  List also includes study area where sample was taken.  See Fasta file with haplotype sequences or GenBank.
DOI: 10.5061/dryad.rr78s/3
title: Linkage disequilibrium patterns across 57 kb region (figures 2A and 2B)
DOI: 10.5061/dryad.rr78s/5
title: Fragment and sample specific Accession nos

description: File includes table of Accession nos for each sample in each sequenced fragment
DOI: 10.5061/dryad.s32ds/1
title: Effect of SAC on Recombination - Matlab Code

description: This file contains the Matlab code used to determine the effect of inter-locus sexually antagonistic coevolution on recombination rate.
DOI: 10.5061/dryad.057mv/1
title: Ura100

description: Binary cognate data from 17 Uralic languages.
DOI: 10.5061/dryad.0fh44/1
title: Microsatellite genotypes of 10 tree frog taxa

description: The first 17 microsatellites were developed from a transcriptome of Hyla arborea. The last 18 markers are anonymous microsatellites. Missing data are coded as NA and null/non-amplifying alleles as 0.
DOI: 10.5061/dryad.2f1k3/10
title: Anas crecca nuDNA for IM.infile

description: Input file for analysis of population history in the program IM. The input contains 8 loci sampled from 50 individuals of Anas crecca (25 from Eurasia, population 1; 25 from North America, population 2). Note that the data have been filtered for recombination, and therefore, some loci have fewer than 100 alleles sampled. The command line for running IM was: -i infile -q1 25 -m1 20 -m2 20 -t 1 -b 500000 -l 12.0 -a 50 -fg -g1 0.9 -g2 0.85 -k 30 -n 30 -q2 25 -qA 5 -s 105976 -p13 -j1 -e 24.0 -o outfile.txt
DOI: 10.5061/dryad.2vc0n/1
title: HazLand_Database

description: Locations of 77 landraces characterized in five southern European countries; Morphological and technological parameters of 42 landraces with unique SSR profiles and standard cultivars 'Tonda Gentile delle Langhe' and 'Negret'; Alleles sizes (in base pairs, bps) at 10 SSR loci in 42 landraces (LR) surveyed on-farm and 57 reference cultivars (CV) collected from different European germplasm repositories.
DOI: 10.5061/dryad.3v670/1
title: Salmon_Size_Data

description: File with data on individual salmon size and experimental design.
DOI: 10.5061/dryad.3v670/2
title: Temperature_Data

description: File with data on daily water temperature for each experimental tank.
DOI: 10.5061/dryad.41dq8/1
title: SV_code_dryad

description: Python code library for identifying structural variation from paired-end illumina reads.
DOI: 10.5061/dryad.4v514/1
title: Data analysed in Gienapp & Merilä J. Evol. Biol.

description: This file contains data on individual fitness and life-history, morphometry as well as the pedigree that were analysed in Gienapp & Merilä J. Evol. Biol. Explanation on data structure is contained withing the file as comments marked by '#' directly before the corresponding data.
DOI: 10.5061/dryad.684mm/1
title: Data_Pringle_2014_ProcB

description: Data include ant recruitment trials, bruchid seed predation, stable isotopes, and ant behavioral time trials.
DOI: 10.5061/dryad.6f27f/1
title: Trait_data_JEB_krause

description: This file includes the raw physiological trait data used for phylogenetic signal calculations.
DOI: 10.5061/dryad.6f27f/2
title: Phylogenetic_signal_blomberg_JEB

description: This file includes the results of each individual Blomberg's K signal calculation used to create figure 1 and table S1. In addition test statistic values are given as well.
DOI: 10.5061/dryad.6f27f/3
title: Read.me

description: This file includes a description of sequences which have been used.
DOI: 10.5061/dryad.6q44t/10
title: Table S3. Toepad primers & sequencing conditions

description: A list of primers used to amplify and sequence the mitochondrial NADH dehydrogenase subunit 2 (ND2) gene from a toepad sample of Sittiparus varius orii. Detailed DNA extraction, PCR, and sequencing protocols for toepad samples are also given.
DOI: 10.5061/dryad.6q44t/2
title: 08352 locus alignment

description: 08352 locus phased alignment in fasta format
DOI: 10.5061/dryad.6q44t/3
title: 09385 locus alignment

description: 09385 locus phased alignment in fasta format
DOI: 10.5061/dryad.6q44t/4
title: 10179 locus alignment

description: 10179 locus phased alignment in fasta format
DOI: 10.5061/dryad.6q44t/5
title: 11887 locus alignment

description: 11887 locus phased alignment in fasta format
DOI: 10.5061/dryad.6q44t/6
title: 12884 locus alignment

description: 12884 locus phased alignment in fasta format
DOI: 10.5061/dryad.6q44t/7
title: 15349 locus alignment

description: 15349 locus phased alignment in fasta format
DOI: 10.5061/dryad.6q44t/8
title: Table S1. Morphological sample list

description: Museum voucher information for all skin specimens of the varied tit (Sittiparus varius) complex examined in this study. Tissue voucher numbers are provided for the few cases in which an individual was sampled for both morphological and genetic data. Acronyms: National Museum of Nature and Science, Tokyo (NSMT); American Museum of Natural History (AMNH); Yamashina Institute of Ornithology (YIO); National Museum of Natural Science, Taiwan (NMNS), Taiwan Endemic Species Research Institute (TESRI).
DOI: 10.5061/dryad.6q44t/9
title: Table S2. Molecular sample list

description: Museum voucher information for all genetic samples of the varied tit (Sittiparus varius) complex used in this study. Stars indicate individuals selected for multilocus nuclear sequencing. Acronyms: National Museum of Nature and Science, Tokyo (NSMT); Taiwan Endemic Species Research Institute (TESRI); Liaoning University, China (LU); Cincinnati Museum Center (CMC); American Museum of Natural History (AMNH); University of Kansas University Natural History Museum (KUNMH).
DOI: 10.5061/dryad.754d0/1
title: Dataset (athersoclerosis statins)
DOI: 10.5061/dryad.9898r/1
title: Programmed_LS_All-figures

description: Excel file with data from all figures
DOI: 10.5061/dryad.9898r/2
title: dosstuff
DOI: 10.5061/dryad.cv35b/10
title: Spinner-SpottedDolphin_Array

description: eArray data files for capture array design
DOI: 10.5061/dryad.cv35b/11
title: merged vcf to genotype

description: R script for converting 'vcf' data from SNP pipeline to a single datafile of genotype and read counts for SNP discovery and genotyping.
DOI: 10.5061/dryad.cv35b/12
title: ngs-mtdna-pipeline-v3.2

description: Mitogenome assembly pipeline R script
DOI: 10.5061/dryad.cv35b/13
title: ngs-snp-pipeline-v3.2

description: nuclear locus assembly and SNP discovery pipeline R scripts.
DOI: 10.5061/dryad.cv35b/14
title: ngs.funcs

description: R data file used by ngs SNP and mtDNA pipeline scripts.
DOI: 10.5061/dryad.cv35b/7
title: Cmyd_array

description: eArray data files for capture array design
DOI: 10.5061/dryad.cv35b/8
title: FinWhale_array

description: eArray data files for capture array design
DOI: 10.5061/dryad.cv35b/9
title: SpermWhale_Array

description: eArray data files for capture array design
DOI: 10.5061/dryad.d2b14/4
title: DATA_morphometry
DOI: 10.5061/dryad.f22m3/1
title: Data from the study 'Observed fitness may affect niche overlap in competing species via selective social information use'

description: Data is collected in the field. Abbreviations are explained in Sheet 1.
DOI: 10.5061/dryad.f435k/1
title: GenBank accession numbers for sequences used in this paper.

description: vwf: exon 28 of the von Willebrand factor gene; RAG2: recombination activating gene 2; cyt b: cytochrome b; co1: cytochrome c oxidase subunit 1; 16S-t(Val)-12S: 16S ribosomal RNA, 12S ribosomal RNA and tRNA-Valin.
DOI: 10.5061/dryad.f435k/2
title: Time-calibrated phylogeny of Mormoopidae and Phyllostomidae species.

description: Time-calibrated maximum clade credibility tree of Mormoopidae and Phyllostomidae in Newick format.
DOI: 10.5061/dryad.f435k/3
title: Morphological variables.

description: Number of individuals (n), body mass (in grams), and cranial volume (in cubic centimetres) for a group of taxa of the families Mormoopidae and Phyllostomidae (n = 61 species).
DOI: 10.5061/dryad.f435k/4
title: Dietary information for a group of taxa of the families Mormoopidae and Phyllostomidae.

description: Trophic specialisation: 1 = specialist, 2 = generalist. Specialisation for phytophagy, nectarivory, frugivory or animalivory: 1 = non-, 2 = complementary, 3 = predominantly, 4 = strictly. Handling behaviour: 0 = low manipulation of food, 1 = high manipulation of food.
DOI: 10.5061/dryad.f51bb/1
title: Dryad-SalataBLJS

description: Zip file containing input files from Structurama, Gaussian clustering, BPP, and spedeSTEM. Also contains nexus files for each of 21 loci.
DOI: 10.5061/dryad.f81sf/4
title: Sampling_location_date
DOI: 10.5061/dryad.f9j15/1
title: Zip file containing parameter files, analysis scripts, and example output files

description: This zip files contains 4 parameter files for running in Simcoal, 4 example data files in Arlequin format, 2 analysis scripts written in java, a readme file, and 2 example output files which contain final results in terms of power at M-ratio and heterozygote excess test.  These files, and how to run analysis, are described in the readme text file, which can be opened in notepad.
DOI: 10.5061/dryad.fr27m/1
title: geometric morphometric landmarks of A_alluaudi LPJs

description: This file contains x and y co-ordinates of A. alluaudi lower pharyngeal jaws (LPJ) used in geometric morphometrics analyses, and calculations of area and centroid size (Figure 3a-c, Table S3). Co-ordinates are in millimeter scale, as set using the 'scale' function in ImageJ. Specimen names correspond those assigned in Table S1.
DOI: 10.5061/dryad.fr27m/2
title: linear morphometric measurements of A_alluaudi LPJs

description: This file describes the linear measurements, and weight measurements made of lower pharyngeal jaws (LPJ), and standard lengths of the A. alluaudi specimens, as used in statistical analyses of LPJ size (Figure 3a-b, Table S3). Linear measurements are in mm and weight measurements are in mg. Specimen names correspond those assigned in Table S1.
DOI: 10.5061/dryad.fr8jm/1
title: GSH_project_MasterList

description: Excel file containing oxidized and reduced glutathione data in patients and controls.
DOI: 10.5061/dryad.gk42k/1
title: Raw Progeny Counts for Experimental Crosses

description: This excel file includes the number of progeny scored from each experimental vial, separated into appropriate phenotypic classes.
DOI: 10.5061/dryad.h0h8b/1
title: Sequence alignment for real-time PCR assay design for Drosophila suzukii

description: Sequence alignment (in FASTA format) of sequences from the study described in Dhami and Kumarasimghe 2014 for the development of species-specific real-time PCR based assay. Published and downloaded sequences have GenBank accession numbers, while unpublished sequences have ID numbers. For more information on these sequences please contact the authors. The variable regions (SNPs) were manually selected.
DOI: 10.5061/dryad.h443d/1
title: Raw fitness data

description: File contains three sheets.  First sheet contains the raw fitness data (technical replicates of RT-qPCR per biological replicate).  Second sheet contains the significance test for each fitness value corrected using FDR for multiple comparisons.  Third sheet contains a summary of fitness data.  Columns labels are self-explicative.
DOI: 10.5061/dryad.jn14d/3
title: Griffiths2013LengthMass2010BlackLake

description: Length and mass for juvenile sockeye salmon (Oncorhynchus nerka) collected in 2010 in Black Lake, AK.
DOI: 10.5061/dryad.p8g3r/1
title: G. c. canadensis and G. c. tabida specimens used for trachea and body size measurements

description: Specimens are housed in the Division of Birds in the Museum of Southwestern Biology (MSB). Weblinks to Arctos database specimen records (including additional ancillary specimen data) are provided for each catalog number.
DOI: 10.5061/dryad.p8g3r/2
title: Newick format tree of Gruidae

description: Branch lengths are in millions of years. Krajewski et al. (2010) calculated divergence dates in parallel analyses using a standard deviation of 0.5, 1.0, and 1.5 on the lognormal priors of the age calibration points based on crane fossil records. We used branch lengths derived from 0.5 standard deviation because it produced a highly resolved topology, however still with a polytomy comprising nodes 12.5 and 11. We used the median value of the 95% highest posterior density interval as our branch length for node 12.5 to resolve the tree.
DOI: 10.5061/dryad.r9p70/1
title: Dryad.Upload.11.1013.Soils

description: Soil resource data, La Selva plots, units ppm
DOI: 10.5061/dryad.r9p70/2
title: Dryad.Upload.11.1013.Trees

description: Tree species, diameter, and census date data
DOI: 10.5061/dryad.rd70f/1
title: Scripts for Analyses

description: This file contains the instructions for generating the appropriate mySQL databases and the scripts required to process this data and recreate the analyses described in Evans et al.
DOI: 10.5061/dryad.rd70f/2
title: Alignment Files

description: This file contains the folder system storing the alignments (*.nex) and Maximum-Likelihood tree files (*_tree.tre) for the sequences presented in Evans et al.Each file is named according to the seq_number information as in the database basic_db.sql (also contained within this DataDryad submission).Each alignment contains only the sequence from the first two codon positions as reported in Evans et. al.
DOI: 10.5061/dryad.s489b/1
title: copperdata

description: Microsatellite DNA allele frequencies at 17 loci. Data are in base pairs and in CONVERT format