cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7yayg9
title: Occurrence Download

description: A dataset containing 2970 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tremarctos ornatus (F.G.Cuvier, 1825)"
 ]
}

 The dataset includes 2970 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230715-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cu89sb
title: Occurrence Download

description: A dataset containing 11872 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((5.925 52.475,5.975 52.475,5.975 52.525,5.925 52.525,5.925 52.475))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 11872 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0306939-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gmnn6
title: Occurrence Download

description: A dataset containing 2125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Issue is Footprint WKT invalid",
 "TaxonKey is Capreolus capreolus (Linnaeus, 1758)",
 "Year 1970-1980"
 ]
}

 The dataset includes 2125 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0311044-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4jdpur
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Goniaeolididae"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067266-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y7z6rq
title: Occurrence Download

description: A dataset containing 1539 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Psidium guajava L."
 ]
}

 The dataset includes 1539 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009067-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k96qnv
title: Occurrence Download

description: A dataset containing 6598 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plantago asiatica L."
 ]
}

 The dataset includes 6598 records from 140 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041623-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vermge
title: Occurrence Download

description: A dataset containing 984 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Agave striata Zucc."
 ]
}

 The dataset includes 984 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0233315-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5vn8t
title: Occurrence Download

description: A dataset containing 3206418 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polychaeta"
 ]
}

 The dataset includes 3206418 records from 1025 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081834-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ez4f78
title: Occurrence Download

description: A dataset containing 1447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acacia saligna (Labill.) H.L.Wendl."
 ]
}

 The dataset includes 1447 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009068-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wxybr
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Senegal",
 "TaxonKey is Batis senegalensis (Linnaeus, 1766)"
 ]
}

 The dataset includes 46 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008538-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u7mx9r
title: Occurrence Download

description: A dataset containing 11691 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Shepherdia canadensis (L.) Nutt., Shepherdia canadensis Linnaeus, 1753)"
 ]
}

 The dataset includes 11691 records from 155 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166825-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.16907212
title: Additional file 7 of Integration of genetic, transcriptomic, and clinical data provides insight into 16p11.2 and 22q11.2 CNV genes

description: Additional file 7: Table S6. Comparison of association results to independent data. For each gene-trait pair, we list the original p-value, the GWAS trait(s) that we classified as most similar to a PheWAS trait, its best p-value in an independent dataset, the number of GWAS datasets that were used for this trait, and the rank of this gene within that dataset. For UK Biobank summary statistics, we have genome-wide data; for datasets with individual-level data, only 16p11.2 and 22q11.2 genes were calculated. See Table S2 for more information on datasets used.
DOI: 10.6084/m9.figshare.16907218
title: Additional file 9 of Integration of genetic, transcriptomic, and clinical data provides insight into 16p11.2 and 22q11.2 CNV genes

description: Additional file 9: Table S8. Traits over-represented in CNV carriers. The four categories of CNV carrier – 16p11.2 duplication, 16p11.2 deletion, 22q11.2 duplication, 22q11.2 deletion – were tested separately. The results for all clinical traits tested are provided. The number of cases and controls for each trait is given, as well as whether the p-value meets either Bonferroni or FDR correction. Traits in bold were represented in over 5% of carriers.
DOI: 10.6084/m9.figshare.9043877.v1
title: Additional file 1: of How do Wolbachia modify the Drosophila ovary? New evidences support the â titration-restitutionâ model for the mechanisms of Wolbachia-induced CI

description: Differentially expressed genes in ovaries of D. melanogaster induced by Wolbachia infection. (XLS 57 kb)
DOI: 10.6084/m9.figshare.9043889
title: Additional file 2: of How do Wolbachia modify the Drosophila ovary? New evidences support the â titration-restitutionâ model for the mechanisms of Wolbachia-induced CI

description: The 20 most enriched KEGG pathways from enrichment analysis of differentially expressed genes in ovaries of D. melanogaster induced by Wolbachia infection. (XLS 30 kb)
DOI: 10.6084/m9.figshare.9043922
title: Additional file 5: of How do Wolbachia modify the Drosophila ovary? New evidences support the â titration-restitutionâ model for the mechanisms of Wolbachia-induced CI

description: GO analysis of target genes of differentially expressed miRNAs in ovaries of D. melanogaster induced by Wolbachia infection. (XLS 305 kb)
DOI: 10.6084/m9.figshare.7996937.v1
title: Additional file 9: of Selective translational usage of TSS and core promoters revealed by translatome sequencing

description: Table S6. Differential usage of core promoters from the same gene by polysome. Under each gene name, there are two (or more) rows corresponding to two (or more) core promoters of the gene. Each gene has one Sdu score, which is defined in the main text. (XLSX 660 kb)
DOI: 10.6084/m9.figshare.9043913.v1
title: Additional file 4: of How do Wolbachia modify the Drosophila ovary? New evidences support the â titration-restitutionâ model for the mechanisms of Wolbachia-induced CI

description: The 20 most enriched KEGG pathways based on target genes of differentially expressed miRNAs in ovaries of D. melanogaster induced by Wolbachia infection. (XLS 33 kb)
DOI: 10.6084/m9.figshare.7471025.v1
title: Soil ameliorants alter physicochemical properties and fungal communities in saline-sodic soils of Northeast China

description: To understand the mechanisms of soil ameliorants affecting microbial communities is important for saline-sodic soils reclamation. High-throughput sequencing was used to characterize the fungal community in soils amended with four types of ameliorants over an 8-year period. Besides a control without any additional ameliorant (CK), other four treatments including 1) amendment with sandy soil (SS), 2) amendment with desulfurization gypsum (DG), 3) amendment with farm manure (FM), and 4) amendment with a mixture of SS, DG, and FM (M) were analyzed. Soil pH and electrical conductivity significantly decreased with the addition of soil ameliorants, whereas the soil organic carbon (SOC), total nitrogen (TN), and SOC/TN ratio (C/N) significantly increased in the FM and M treatments compared with the CK treatment. Fungal richness increased significantly with the mixed ameliorants addition (M). Distinct fungal community structures were observed in the treatments with soil ameliorants. The fungal community composition was significantly associated with the SOC, C/N, aggregate content with a diameter &gt; 0.25 mm and geometric mean diameter. The changes in these soil characteristics were highly correlated with the ameliorants additions, suggesting that the impacts of ameliorants on the soil fungal community occurred indirectly as a result of alterations to soil physiochemical properties.
DOI: 10.6084/m9.figshare.9043907
title: Additional file 3: of How do Wolbachia modify the Drosophila ovary? New evidences support the â titration-restitutionâ model for the mechanisms of Wolbachia-induced CI

description: GO analysis of differentially expressed genes in ovaries of D. melanogaster induced by Wolbachia infection. (XLS 53 kb)
DOI: 10.6084/m9.figshare.7471025
title: Soil ameliorants alter physicochemical properties and fungal communities in saline-sodic soils of Northeast China

description: To understand the mechanisms of soil ameliorants affecting microbial communities is important for saline-sodic soils reclamation. High-throughput sequencing was used to characterize the fungal community in soils amended with four types of ameliorants over an 8-year period. Besides a control without any additional ameliorant (CK), other four treatments including 1) amendment with sandy soil (SS), 2) amendment with desulfurization gypsum (DG), 3) amendment with farm manure (FM), and 4) amendment with a mixture of SS, DG, and FM (M) were analyzed. Soil pH and electrical conductivity significantly decreased with the addition of soil ameliorants, whereas the soil organic carbon (SOC), total nitrogen (TN), and SOC/TN ratio (C/N) significantly increased in the FM and M treatments compared with the CK treatment. Fungal richness increased significantly with the mixed ameliorants addition (M). Distinct fungal community structures were observed in the treatments with soil ameliorants. The fungal community composition was significantly associated with the SOC, C/N, aggregate content with a diameter &gt; 0.25 mm and geometric mean diameter. The changes in these soil characteristics were highly correlated with the ameliorants additions, suggesting that the impacts of ameliorants on the soil fungal community occurred indirectly as a result of alterations to soil physiochemical properties.
DOI: 10.6084/m9.figshare.9043922.v1
title: Additional file 5: of How do Wolbachia modify the Drosophila ovary? New evidences support the â titration-restitutionâ model for the mechanisms of Wolbachia-induced CI

description: GO analysis of target genes of differentially expressed miRNAs in ovaries of D. melanogaster induced by Wolbachia infection. (XLS 305 kb)
DOI: 10.6084/m9.figshare.9043958
title: Additional file 4: of A multiple breast cancer stem cell model to predict recurrence of T1â 3, N0 breast cancer

description: Table S1. The detailed information of end-point of follow-up for local recurrence or distant metastasis. (XLSX 124 kb)
DOI: 10.6084/m9.figshare.10094117
title: MOESM10 of Lignin degradation potential and draft genome sequence of Trametes trogii S0301

description: Additional file 10. CAZymes encoded by the T. trogii S0301 genome.
DOI: 10.6084/m9.figshare.10094117.v1
title: MOESM10 of Lignin degradation potential and draft genome sequence of Trametes trogii S0301

description: Additional file 10. CAZymes encoded by the T. trogii S0301 genome.
DOI: 10.6084/m9.figshare.14286940
title: Latent TGF-beta binding protein-1 plays an important role in craniofacial development

description: Abstract Objective: This study aims to replicate the phenotype of Ltbp1 knockout mice in zebrafish, and to address the function of LTBP1 in craniofacial development. Methods: Whole mount in situ hybridization (WISH) of ltbp1 was performed at critical periods of zebrafish craniofacial development to explore the spatial-temporal expression pattern. Furthermore, we generated morpholino based knockdown model of ltbp1 to study the craniofacial phenotype. Results: WISH of ltbp1 was mainly detected in the mandibular jaw region, brain trunk, and internal organs such as pancreas and gallbladder. And ltbp1 colocalized with both sox9a and ckma in mandibular region. Morpholino based knockdown of ltbp1 results in severe jaw malformation. Alcian blue staining revealed severe deformity of Meckel's cartilage along with the absence of ceratobranchial. Three-dimension measurements of ltbp1 morphants jaws showed decrease in both mandible length and width and increase in open mouth distance. Expression of cartilage marker sox9a and muscle marker ckma was decreased in ltbp1 morphants. Conclusions: Our experiments found that ltbp1 was expressed in zebrafish mandibular jaw cartilages and the surrounding muscles. The ltbp1 knockdown zebrafish exhibited phenotypes consistent with Ltbp1 knockout mice. And loss of ltbp1 function lead to significant mandibular jaw defects and affect both jaw cartilages and surrounding muscles.
DOI: 10.6084/m9.figshare.14286940.v1
title: Latent TGF-beta binding protein-1 plays an important role in craniofacial development

description: Abstract Objective: This study aims to replicate the phenotype of Ltbp1 knockout mice in zebrafish, and to address the function of LTBP1 in craniofacial development. Methods: Whole mount in situ hybridization (WISH) of ltbp1 was performed at critical periods of zebrafish craniofacial development to explore the spatial-temporal expression pattern. Furthermore, we generated morpholino based knockdown model of ltbp1 to study the craniofacial phenotype. Results: WISH of ltbp1 was mainly detected in the mandibular jaw region, brain trunk, and internal organs such as pancreas and gallbladder. And ltbp1 colocalized with both sox9a and ckma in mandibular region. Morpholino based knockdown of ltbp1 results in severe jaw malformation. Alcian blue staining revealed severe deformity of Meckel's cartilage along with the absence of ceratobranchial. Three-dimension measurements of ltbp1 morphants jaws showed decrease in both mandible length and width and increase in open mouth distance. Expression of cartilage marker sox9a and muscle marker ckma was decreased in ltbp1 morphants. Conclusions: Our experiments found that ltbp1 was expressed in zebrafish mandibular jaw cartilages and the surrounding muscles. The ltbp1 knockdown zebrafish exhibited phenotypes consistent with Ltbp1 knockout mice. And loss of ltbp1 function lead to significant mandibular jaw defects and affect both jaw cartilages and surrounding muscles.
DOI: 10.6084/m9.figshare.10094123
title: MOESM11 of Lignin degradation potential and draft genome sequence of Trametes trogii S0301

description: Additional file 11. Genes encoding CAZymes and enzymes of the laccase pathway.
DOI: 10.6084/m9.figshare.10094123.v1
title: MOESM11 of Lignin degradation potential and draft genome sequence of Trametes trogii S0301

description: Additional file 11. Genes encoding CAZymes and enzymes of the laccase pathway.
DOI: 10.6084/m9.figshare.13237501.v1
title: Additional file 2 of DLDTI: a learning-based framework for drug-target interaction identification using neural networks and network representation

description: Additional file 2: Table S2. Complete results of predicted targets of TMPZ.
DOI: 10.6084/m9.figshare.10094177
title: MOESM8 of Lignin degradation potential and draft genome sequence of Trametes trogii S0301

description: Additional file 8. Transcriptome mapping and gene annotation result of T. trogii S0301.
DOI: 10.6084/m9.figshare.10094177.v1
title: MOESM8 of Lignin degradation potential and draft genome sequence of Trametes trogii S0301

description: Additional file 8. Transcriptome mapping and gene annotation result of T. trogii S0301.
DOI: 10.24403/jp.1320054
title: Exkursion längs des Südrandes des Tautenburger Forstes am 8. Mai 1983 / F. K. Meyer
DOI: 10.24403/jp.1320326
title: Exkursion in das Helbetal westlich Greußen und an die Steppenhügel bei Herrnschwende, Nausiß und Günstedt östlich Greußen am 15. Mai 1983 / F. K. Meyer
DOI: 10.6084/m9.figshare.14811034
title: Additional file 4 of Online database for brain cancer-implicated genes: exploring the subtype-specific mechanisms of brain cancer

description: Additional file 4: Table S3. Gene prioritization results for all the 1394 genes with less than 20 evidentiary mentions in the literature.
DOI: 10.6084/m9.figshare.14811028.v1
title: Additional file 2 of Online database for brain cancer-implicated genes: exploring the subtype-specific mechanisms of brain cancer

description: Additional file 2: Table S1. General information of the 1421 human brain cancer genes in the BCGene.
DOI: 10.6084/m9.figshare.14811034.v1
title: Additional file 4 of Online database for brain cancer-implicated genes: exploring the subtype-specific mechanisms of brain cancer

description: Additional file 4: Table S3. Gene prioritization results for all the 1394 genes with less than 20 evidentiary mentions in the literature.
DOI: 10.6084/m9.figshare.14811031
title: Additional file 3 of Online database for brain cancer-implicated genes: exploring the subtype-specific mechanisms of brain cancer

description: Additional file 3: Table S2. Curated brain cancer subtype information.
DOI: 10.6084/m9.figshare.14811031.v1
title: Additional file 3 of Online database for brain cancer-implicated genes: exploring the subtype-specific mechanisms of brain cancer

description: Additional file 3: Table S2. Curated brain cancer subtype information.
DOI: 10.6084/m9.figshare.14811028
title: Additional file 2 of Online database for brain cancer-implicated genes: exploring the subtype-specific mechanisms of brain cancer

description: Additional file 2: Table S1. General information of the 1421 human brain cancer genes in the BCGene.
DOI: 10.6084/m9.figshare.21103036
title: Deciphering the lncRNA and mRNA profiles of Min pig backfat after acute cold stress

description: Cold stress can promote fat metabolism and reduce fat deposition. The present study compared differentially expressed (DE) lncRNAs and mRNAs in the subcutaneous back fat of Min pigs subjected to 24 h acute cold stress. Transcriptome sequencing was used to identify DE lncRNAs and mRNAs. A lncRNA mRNA co expression network was constructed using the confirmed lncRNAs. GO and KEGG analyses were performed to investigate the biological processes involved in the response to acute cold stress. A total of 166 DE lncRNAs and 269 DE mRNAs were found. Several genes such as ANGPTL4, KLF11 and NUPR1 were related to lipid metabolism. Interferon stimulating genes (ISGS) such as RSAD2, ISG20, ISG15, DDX60, MX2, MX1 and IFI6 were all significantly up-regulated. In addition, genes related to blood flow, respiration, and oxidative stress were also up-regulated. Many terms related to defense response to a virus were found in the GO annotation. A lncRNA mRNA co expression network comprising 46 specific mRNAs and the top 10 up-regulated DE lncRNAs was constructed. According to the results, the interaction between lncRNAs and mRNAs was complex. This study provides genome-wide gene and lncRNA expression profiles in adipose tissue of pigs after acute cold stress.
DOI: 10.24403/jp.1320327
title: Exkursion nach Dörrberg, Arlesberg und Geschwenda am 29. Mai 1983 / L. Meinunger, K. Reber
DOI: 10.6084/m9.figshare.10094321
title: MOESM10 of pTuneos: prioritizing tumor neoantigens from next-generation sequencing data

description: Additional file 10: Table S9. A. Clinical information and neoantigen information of cohort Rizvi (n=31). B. Clinical information and neoantigen information of cohort Snyder (n=59). C. Clinical information and neoantigen information of cohort Van Allen (n=103).
DOI: 10.6084/m9.figshare.10094321.v1
title: MOESM10 of pTuneos: prioritizing tumor neoantigens from next-generation sequencing data

description: Additional file 10: Table S9. A. Clinical information and neoantigen information of cohort Rizvi (n=31). B. Clinical information and neoantigen information of cohort Snyder (n=59). C. Clinical information and neoantigen information of cohort Van Allen (n=103).
DOI: 10.6084/m9.figshare.10094330
title: MOESM11 of pTuneos: prioritizing tumor neoantigens from next-generation sequencing data

description: Additional file 11: Table S10. A. Candidate neoepitopes information obtained from patient CA9903 in Rizvi cohort using pTuneos Pre&RecNeo. B. Candidate neoepitopes information obtained from patient CR9306 in Snyder cohort using pTuneos Pre&RecNeo. C. Candidate neoepitopes information obtained from patient CR0095 in Snyder cohort using pTuneos Pre&RecNeo.
DOI: 10.6084/m9.figshare.10094330.v1
title: MOESM11 of pTuneos: prioritizing tumor neoantigens from next-generation sequencing data

description: Additional file 11: Table S10. A. Candidate neoepitopes information obtained from patient CA9903 in Rizvi cohort using pTuneos Pre&RecNeo. B. Candidate neoepitopes information obtained from patient CR9306 in Snyder cohort using pTuneos Pre&RecNeo. C. Candidate neoepitopes information obtained from patient CR0095 in Snyder cohort using pTuneos Pre&RecNeo.