cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/y5f-13d-744
title: Astacus astacus Linnaeus 1758

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/xwc-70m-b0x
title: Porcellionides

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/52n-0bx-ynl
title: Calappa calappa (Linnaeus 1758)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/rbk-gk5-gdk
title: Pandalus montagui Leach 1814

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/gw3-4et-50f
title: Caridina africana Kingsley 1883

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/yfx-p3y-sr6
title: Armadillidium vulgare (Latreille 1804)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/4ta-gmq-2a9
title: Munida tenuimana G. O. Sars 1872

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/l2z-8m5-eqg
title: Pagurus pubescens Kröyer 1838

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/cr3-ps2-nsx
title: Porcellio scaber Latreille 1804

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/qc3-7k2-p3c
title: Munida tenuimana G. O. Sars 1872

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/p13-xwn-sy3
title: Cymo andreossyi (Audouin 1826)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/vbx-t3x-ba1
title: Porcellio ornatus H. Milne-Edwards 1840

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/grw-glf-w8m
title: Munida tenuimana G. O. Sars 1872

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/ch8-n8p-39l
title: Pandalus montagui Leach 1814

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/r8r-fq4-jpb
title: Pagurus cuanensis Bell 1845

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/j9x-mwt-vxx
title: Armadillo officinalis Duméril 1816

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/pl5-ans-02l
title: Porcellionides

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.5281/zenodo.13988552
title: Acadia National Park pitch pine forest data

description: Here you can find (almost) all data and code associated with my work as a Second Century Stewardship Fellow in Acadia National Park. I sampled pitch pine stands in the park to assess the tree's vulnerability to southern pine beetle. The data come from prism sweeps and hemispherical photos, and I measured dbh of each tree as well. As there is a 100 file limit here on Zenodo, the hemispherical photos cannot be uploaded. However, they are uploaded in our bitbucket repository, which is linked here (https://bitbucket.org/crk1025/acadia-pitch-pine-data-and-code). 

This repository is linked to my work as a Second Century Stewardship Fellow (https://www.scsparkscience.org). This fellowship is supported by the U.S. Department of Interior National Park Service, Schoodic Institute at Acadia National Park, the David Evans Shaw Family Foundation, and the National Park Foundation. I designed this project with advice from Dr. Jeff Garnas (my PhD advisor) and Dr. Mark Ducey. I personally collected the data when I was a PhD student at the University of New Hampshire, and this work was a chapter of my PhD. Jeff and Mark are coauthors on this work.

The holistic dataset is available in the file all_data_joined.csv. The rest of the data in this repository went into the making of this holistic file. The bitbucket repository has all the files organized into folders that may make my workflow easier to understand.

Descriptions of data files:



all_temp_data.csv contains all temperature data. For more information about our temperature sensors, see the file temperature_logger_location_info.csv in the metadata folder.

In point_meta_data.csv you will find information about each sampling point.

In raw_tree_data.csv you will find information about each measured tree, including tree species and dbh. Tree species codes are available in the file tree_species_codes.csv in the metadata folder.

In spb_mortality_data.csv you will find data pertinent to southern pine beetle survival, including the expected percent mortality at different temperatures. This data comes from Tran et al. 2017 (DOI: 10.1890/06-0512).


Descriptions of R scripts:



Some scripts are named beginning with a number: 01, 02, or 03. These need to be run in order, so that the outputs from the 01 scripts can go into the 02 script and then 03. The outputs from the 01 scripts can be found in the r_outputs folder.

If the name of the script does not begin with a number, this script can be run at any point in the workflow.

Each script contains notes about its contents.
DOI: 10.3535/7z3-j78-ltw
title: Caridina nilotica var. brevidactyla Roux 1919

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.5281/zenodo.13988551
title: Acadia National Park pitch pine forest data

description: Here you can find (almost) all data and code associated with my work as a Second Century Stewardship Fellow in Acadia National Park. I sampled pitch pine stands in the park to assess the tree's vulnerability to southern pine beetle. The data come from prism sweeps and hemispherical photos, and I measured dbh of each tree as well. As there is a 100 file limit here on Zenodo, the hemispherical photos cannot be uploaded. However, they are uploaded in our bitbucket repository, which is linked here (https://bitbucket.org/crk1025/acadia-pitch-pine-data-and-code). 

This repository is linked to my work as a Second Century Stewardship Fellow (https://www.scsparkscience.org). This fellowship is supported by the U.S. Department of Interior National Park Service, Schoodic Institute at Acadia National Park, the David Evans Shaw Family Foundation, and the National Park Foundation. I designed this project with advice from Dr. Jeff Garnas (my PhD advisor) and Dr. Mark Ducey. I personally collected the data when I was a PhD student at the University of New Hampshire, and this work was a chapter of my PhD. Jeff and Mark are coauthors on this work.

The holistic dataset is available in the file all_data_joined.csv. The rest of the data in this repository went into the making of this holistic file. The bitbucket repository has all the files organized into folders that may make my workflow easier to understand.

Descriptions of data files:



all_temp_data.csv contains all temperature data. For more information about our temperature sensors, see the file temperature_logger_location_info.csv in the metadata folder.

In point_meta_data.csv you will find information about each sampling point.

In raw_tree_data.csv you will find information about each measured tree, including tree species and dbh. Tree species codes are available in the file tree_species_codes.csv in the metadata folder.

In spb_mortality_data.csv you will find data pertinent to southern pine beetle survival, including the expected percent mortality at different temperatures. This data comes from Tran et al. 2017 (DOI: 10.1890/06-0512).


Descriptions of R scripts:



Some scripts are named beginning with a number: 01, 02, or 03. These need to be run in order, so that the outputs from the 01 scripts can go into the 02 script and then 03. The outputs from the 01 scripts can be found in the r_outputs folder.

If the name of the script does not begin with a number, this script can be run at any point in the workflow.

Each script contains notes about its contents.
DOI: 10.3535/a7s-gm7-52h
title: Armadillidium nasatum Budde-Lund 1885

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/j0h-90f-gm3
title: Oniscus asellus Linnaeus 1758

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/3xs-1zx-8gw
title: Porcellio ornatus H. Milne-Edwards 1840

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/dba-xrf-zwl
title: Munida tenuimana G. O. Sars 1872

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/6gg-nc7-9zl
title: Calappa calappa (Linnaeus 1758)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/krr-7jw-1b9
title: Mursia hawaiiensis Rathbun 1893

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/282-z2a-h0z
title: Pagurus cuanensis Bell 1845

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/4sk-7pp-dzq
title: Calappa calappa (Linnaeus 1758)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/cxv-62w-8n1
title: Pagurus cuanensis Bell 1845

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/d8t-kz8-pvw
title: Porcellio orarum Verhoeff 1910

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/pzt-wf1-6sk
title: Porcellio orarum Verhoeff 1910

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/f1a-czs-les
title: Cymo andreossyi (Audouin 1826)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/sfr-ydf-1lv
title: Cymo andreossyi (Audouin 1826)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/5en-5wk-8cm
title: Munidopsis serricornis (Loeven 1852)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/dm2-w0m-gkq
title: Cymo andreossyi (Audouin 1826)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/x84-klr-27f
title: Porcellio

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/z84-4ld-grd
title: Pagurus bernhardus (Linnaeus 1758)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/1cp-72g-mtw
title: Caridina nilotica (P. Roux 1933)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/5kx-w63-78m
title: Diogenes pugilator (Roux 1829)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/qre-09c-jhc
title: Armadillidium vulgare (Latreille 1804)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.15468/dl.f9wqha
title: Occurrence Download

description: A dataset containing 802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Micropterus salmoides",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 802 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017220-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/0gv-0kb-2ql
title: Caridina nilotica (P. Roux 1933)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/mhm-w5k-fkg
title: Pandalina brevirostris (Rathke 1843)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/6tb-ldx-nfr
title: Armadillidium nasatum Budde-Lund 1885

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/spz-tpn-b68
title: Oniscus asellus Linnaeus 1758

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/985-khw-zrc
title: Caridina nilotica (P. Roux 1933)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/g58-ay0-51b
title: Necora puber (Linnaeus 1767)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/gpj-6c6-v05
title: Philoscia affinis Verhoeff 1908

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/wn9-c6a-hvn
title: Munida tenuimana G. O. Sars 1872

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/dcp-thc-k3a
title: Macropodia rostrata (Linnaeus 1761)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/pkj-sgn-vq8
title: Caridina nilotica var. brevidactyla Roux 1919

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/xsl-421-g33
title: Munidopsis camelus Ortmann 1892

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/9r6-xwe-mq5
title: Macropodia rostrata (Linnaeus 1761)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/tjc-1xf-92v
title: Munida honshuensis Bendedict 1902

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/1lk-z7y-5aa
title: Munidopsis cylindrophthalma (Alcock 1894)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/5ds-q7f-m06
title: Macropodia rostrata (Linnaeus 1761)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.15468/dl.j55ej9
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Micropterus salmoides",
 "Country is Kenya",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017218-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/3g1-0mh-0nz
title: Macropodia rostrata (Linnaeus 1761)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/5ej-q69-mdp
title: Pagurus pubescens Kröyer 1838

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/20g-z81-adz
title: Caridina nilotica var. brevidactyla Roux 1919

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/xey-7rc-4kd
title: Macropodia rostrata (Linnaeus 1761)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/78q-jgz-dsz
title: Inachus dorsettensis (Pennant 1777)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/bnd-a2g-3ye
title: Palaemon elegans Rathke 1837

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/bk5-nrq-bfe
title: Caridina typus H. Milne-Edwards 1837

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/q1z-zp5-xy5
title: Caridina typus H. Milne-Edwards 1837

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/s23-gvj-qqj
title: Hyas coarctatus Leach 1815

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.15468/dl.ave2hp
title: Occurrence Download

description: A dataset containing 3387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Micropterus salmoides",
 "Country is Korea, Republic of",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3387 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017219-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/04y-gey-93c
title: Caridina africana Kingsley 1883

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/ae0-m4m-hkf
title: Hyas coarctatus Leach 1815

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/z4x-4ae-vef
title: Caridina nilotica var. brevidactyla Roux 1919

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/zj1-n2w-f56
title: Hyas coarctatus Leach 1815

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/1c7-6m2-yr9
title: Caridina japonica De Man 1892

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/j0t-15a-9zz
title: Inachus phalangium (Fabricius 1775)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/teq-p8f-a3f
title: Inachus phalangium (Fabricius 1775)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/tgv-vyz-ry8
title: Inachus dorsettensis (Pennant 1777)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/z9d-1rz-t5c
title: Macropodia rostrata (Linnaeus 1761)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/cq5-yzn-2gx
title: Caridina nilotica var. brevidactyla Roux 1919

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/s57-rxn-a2t
title: Geothelphusa dehaani (White 1847)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/60m-v1j-bw9
title: Nagurus

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/f3y-816-30f
title: Caridina nilotica minahassae De Man 1902

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/0pl-ghz-wfd
title: Caridina typus H. Milne-Edwards 1837

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/xge-p4z-2lj
title: Macropodia rostrata (Linnaeus 1761)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/l99-bcf-wer
title: Macropodia rostrata (Linnaeus 1761)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/pff-d5v-ntj
title: Macropodia rostrata (Linnaeus 1761)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/cbm-sb3-rt3
title: Necora puber (Linnaeus 1767)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/erz-pne-y3n
title: Philocheras trispinosus (Hailstone 1835)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/rhb-v1k-ypl
title: Cervimunida princeps Benedict 1902

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/5s4-y7s-kch
title: Macropodia rostrata (Linnaeus 1761)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/rl9-hv2-159
title: Agononida incerta (Henderson 1888)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/fg9-mtc-jb2
title: Macropodia rostrata (Linnaeus 1761)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.
DOI: 10.3535/nvc-6js-9gc
title: Inachus phalangium (Fabricius 1775)

description: Digital Specimen for the physical specimen hosted at Senckenberg Research Institute and Natural History Museum Frankfurt/M.