cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19095536
title: Magnetic Fabrics and Petrography of Rocksalts Reveal Preferred Orientation of Anhydrites Within a Halite Matrix

description: The ecxel file contain the magnetic data used in: Issachar, R.; Weinberger, R.; Levi, T.; Barabasch, J.; Urai, J.L. Magnetic Fabrics and Petrography of Rocksalts Reveal Preferred Orientation of Anhydrites Within a Halite Matrix. Minerals 2022
DOI: 10.48370/ofd/n7itei
title: Athelia epiphylla Pers., 2400

description: Fungarium Macromycetes
DOI: 10.34740/kaggle/dsv/3118652
title: AutoXGB
DOI: 10.5281/zenodo.5925037
title: ANITA knowledge base Instances and Ontology (OWL)

description: Dataset reported in the deliverable D3.10
DOI: 10.5281/zenodo.5925036
title: ANITA knowledge base Instances and Ontology (OWL)

description: Dataset reported in the deliverable D3.10
DOI: 10.48370/ofd/ljpxlb
title: Athelia epiphylla Pers., 2402

description: Fungarium Macromycetes
DOI: 10.13012/b2idb-9924420_v1
title: Data for The Orinoco Low-level Jet and the Cross-Equatorial Moisture Transport over tropical South America: Lessons from seasonal WRF simulations

description: This dataset contains results from WRF simulations over northern South America. The Orinoco Low-Level Jet (OLLJ) and the Cross-Equatorial Moisture Transport are important circulation structures of the climate of tropical South America. We explore the sensitivity of the OLLJ and cross-equatorial transport to the representation of surface fluxes and turbulence by using two different Land Surface Model (LSM) schemes (Noah and CLM) and three Planetary Boundary Layer (PBL) schemes (YSU, QNSE and MYNN).
DOI: 10.48370/ofd/3hfvbt
title: Athelia epiphylla Pers., 2403

description: Fungarium Macromycetes
DOI: 10.48370/ofd/g01bgc
title: Peniophora nuda (Fr.) Bres., 5097

description: Fungarium Makromycetes
DOI: 10.48370/ofd/id64jk
title: Peniophora pithya (Pers.) J. Erikss., 475

description: Fungarium Makromycetes
DOI: 10.6084/m9.figshare.19095578
title: Supplementary Material for: The Genome Reduction Excludes the Ribosomal Rescue System in <b><i>Acholeplasmataceae</i></b>

description: The <i>trans</i>-translation process is a ribosomal rescue system for stalled ribosomes processing truncated mRNA. The genes <i>ssrA</i> and <i>smpB</i> fulfil the key functions in most bacteria, but some species have either lost these genes or the function of the ribosomal rescue system is taken over by other genes. To date, the ribosomal rescue system has not been analysed in detail for the <i>Acholeplasmataceae</i>. This family, in the Mollicutes class, comprises the genus <i>Acholeplasma</i> and the provisional taxon “<i>Candidatus</i> Phytoplasma”. Despite their monophyletic origin, the two clades can be separated by traits such as not representing primary pathogens for acholeplasmas versus being phytopathogenic for the majority of phytoplasmas. Both taxa share reduced genomes, but only phytoplasma genomes are characterised by a remarkable level of instability and reduction. Despite the general relevance of the ribosomal rescue system, information is lacking on coding, the genomic context and pseudogenisation of <i>smpB</i> and <i>ssrA</i> and their possible application as a phylogenetic marker. Herein, we provide a comprehensive analysis of the ribosomal rescue system in members of <i>Acholeplasmataceae</i>. The examined <i>Acholeplasmataceae</i> genomes encode a ribosomal rescue system, which depends on tmRNA encoded by <i>ssrA</i> acting in combination with its binding protein SmpB. Conserved gene synteny is evident for <i>smpB</i>, while <i>ssrA</i> shows a less conserved genomic context. Analysis of the tmRNA sequences highlights the variability of proteolysis tag sequences and short conserved sites at the 5′- and 3′-ends. Analyses of <i>smpB</i> provided no hints regarding the coding of pseudogenes, but they did suggest its application as a phylogenetic marker of <i>Acholeplasmataceae</i> – in accordance with 16S rDNA topology. Sequence variability of <i>smpB</i> provides sufficient information for species assignment and phylogenetic analysis.
DOI: 10.6084/m9.figshare.19095578.v1
title: Supplementary Material for: The Genome Reduction Excludes the Ribosomal Rescue System in <b><i>Acholeplasmataceae</i></b>

description: The <i>trans</i>-translation process is a ribosomal rescue system for stalled ribosomes processing truncated mRNA. The genes <i>ssrA</i> and <i>smpB</i> fulfil the key functions in most bacteria, but some species have either lost these genes or the function of the ribosomal rescue system is taken over by other genes. To date, the ribosomal rescue system has not been analysed in detail for the <i>Acholeplasmataceae</i>. This family, in the Mollicutes class, comprises the genus <i>Acholeplasma</i> and the provisional taxon “<i>Candidatus</i> Phytoplasma”. Despite their monophyletic origin, the two clades can be separated by traits such as not representing primary pathogens for acholeplasmas versus being phytopathogenic for the majority of phytoplasmas. Both taxa share reduced genomes, but only phytoplasma genomes are characterised by a remarkable level of instability and reduction. Despite the general relevance of the ribosomal rescue system, information is lacking on coding, the genomic context and pseudogenisation of <i>smpB</i> and <i>ssrA</i> and their possible application as a phylogenetic marker. Herein, we provide a comprehensive analysis of the ribosomal rescue system in members of <i>Acholeplasmataceae</i>. The examined <i>Acholeplasmataceae</i> genomes encode a ribosomal rescue system, which depends on tmRNA encoded by <i>ssrA</i> acting in combination with its binding protein SmpB. Conserved gene synteny is evident for <i>smpB</i>, while <i>ssrA</i> shows a less conserved genomic context. Analysis of the tmRNA sequences highlights the variability of proteolysis tag sequences and short conserved sites at the 5′- and 3′-ends. Analyses of <i>smpB</i> provided no hints regarding the coding of pseudogenes, but they did suggest its application as a phylogenetic marker of <i>Acholeplasmataceae</i> – in accordance with 16S rDNA topology. Sequence variability of <i>smpB</i> provides sufficient information for species assignment and phylogenetic analysis.
DOI: 10.6084/m9.figshare.19095626
title: Supplementary Material for: Muscle Mass and Inflammation in Older Adults: Impact of the Metabolic Syndrome

description: <b><i>Background:</i></b> Inflammatory processes are a cause of accelerated loss of muscle mass. Metabolic syndrome (MetS) is a highly prevalent age-related condition, which may promote and be promoted by inflammation. However, whether inflammation in MetS (metaflammation) is associated with lower muscle mass is still unclear. <b><i>Methods:</i></b> Complete cross-sectional data on body composition, MetS, and the inflammatory markers interleukin (IL)-1β, IL-6, IL-10, tumor necrosis factor (TNF), and C-reactive protein (CRP) were available for 1,377 BASE-II participants (51.1% women; 68 ± 4 years old). Appendicular lean mass (ALM) was assessed by dual-energy X-ray absorptiometry. Low muscle mass (low ALM-to-BMI ratio [ALMBMI]) was defined according to the Foundation for the National Institutes of Health (FNIH) Sarcopenia Project. Regression models, adjusted for an increasing number of confounders (sex, age, physical activity, morbidities, diabetes mellitus type II, TSH, albumin, HbA1c, smoking habits, alcohol intake, education, and energy intake/day), were used to calculate the association between low ALMBMI and high inflammation (tertile 3) according to MetS. <b><i>Results:</i></b> MetS was present in 36.2% of the study population, and 9% had low ALMBMI. In the whole study population, high CRP (odds ratio [OR]: 2.7 [95% CI: 1.6–4.7; <i>p</i> = 0.001]) and high IL-6 (OR: 2.1 [95% CI: 1.2–1.9; <i>p</i> = 0.005]) were associated with low ALMBMI. In contrast, no significant association was found between TNF, IL-10, or IL-1β with low ALMBMI. When participants were stratified by MetS, results for IL-6 remained significant only in participants with MetS. <b><i>Conclusions:</i></b> Among BASE-II participants, low ALMBMI was associated with inflammation. Low-grade inflammation triggered by disease state, especially in the context of MetS, might favor loss of muscle mass, so a better control of MetS might help to prevent sarcopenia. Intervention studies to test whether strategies to prevent MetS might also prevent loss of muscle mass seem to be promising.
DOI: 10.25345/c5xc6z
title: MassIVE MSV000088752 - The Proteomic Characteristics of Rainbow Trout Blood with Severe, Moderate and Asymptomatic course of Vibrio anguillarum infection
title: This data describes the clinical picture of natural Vibrio anguillarum infection in rainbow trout during an outbreak on a fish farm. Molecular mechanisms associated with the host immune response have been investigated using mass spectrometric analysis of trout plasma proteins. Three fish populations were identified among infected trout according to the severity of infection: fish with severe lesions (SL), with moderate infectious process (IP) and asymptomatic fish (AS). As expected, pro-inflammatory interleukins, complement components, acute phase proteins and antimicrobial peptides were implicated in the acute pathogenesis. Systemic coagulopathy was accompanied by increased antithrombotic reactions. Reconstruction of metabolic pathways also revealed a high energy requirement for the immune response in severely affected fish. An unexpected result was a small difference between fish with moderate symptoms and fish with no or minor external signs of pathology, proposed as resistant to infection. Increased production of antiproteases and enhanced blood coagulation cascade were observed in healthier fish, which may underlie the mechanisms of a controlled, non-self-damaging immune response to infection.
DOI: 10.48370/ofd/dbasnp
title: Peniophora pithya (Pers.) J. Erikss., 492

description: Fungarium Makromycetes
DOI: 10.6084/m9.figshare.19095623
title: Untitled Item

description: data sheet
DOI: 10.6084/m9.figshare.19095623.v1
title: Untitled Item

description: data sheet
DOI: 10.48370/ofd/9g9mcy
title: Athelia epiphylla Pers., 2436

description: Fungarium Macromycetes
DOI: 10.48370/ofd/e1lan5
title: Peniophora pithya (Pers.) J. Erikss., 1679

description: Fungarium Makromycetes
DOI: 10.5281/zenodo.5911062
title: Data set for "Relaxation time asymmetry in stator dynamics of the bacterial flagellar motor"

description: Zipped file containing three python Dictionaries pertaining to the Science Advances publication "Relaxation time asymmetry in stator dynamics of the bacterial flagellar motor," authored by Ruben Perez-Carrasco, María-José Franco-Oñate, Jean-Charles Walter, Jérôme Dorignac, Fred Geniet, John Palmeri, Andrea Parmeggiani, Nils-Ole Walliser, and Ashley L Nord.
DOI: 10.5281/zenodo.5911061
title: Data set for "Relaxation time asymmetry in stator dynamics of the bacterial flagellar motor"

description: Zipped file containing three python Dictionaries pertaining to the Science Advances publication "Relaxation time asymmetry in stator dynamics of the bacterial flagellar motor," authored by Ruben Perez-Carrasco, María-José Franco-Oñate, Jean-Charles Walter, Jérôme Dorignac, Fred Geniet, John Palmeri, Andrea Parmeggiani, Nils-Ole Walliser, and Ashley L Nord.
DOI: 10.48370/ofd/xbtioj
title: Peniophora pithya (Pers.) J. Erikss., 2510

description: Fungarium Makromycetes
DOI: 10.5281/zenodo.5902672
title: Vegetation Dynamics on Crete

description: This dataset contains long-term vegetation dynamics assessments for the Island of Crete, Greece. 10+ years ago, Landsat time series analyses were inevitably limited to few expensive images from carefully selected acquisition dates. Yet, such a static selection may have introduced uncertainties when spatial or inter-annual variability in seasonal vegetation growth were large. As seminal pre-open-data-era papers are still heavily cited, variations of their workflows are still widely used, too. Thus, we here quantitatively assessed the level of agreement between an approach using carefully selected images, and a state-of-the-art analysis that uses all available images. Further details can be found in the corresponding paper. <strong>Temporal Extent: </strong>1984-2006. <strong>Spatial Extent:</strong> Crete, Greece <strong>Data format: </strong>The data come in tiles of 30x30km. The projection is EPSG:3035. The images are compressed GeoTiff files (*.tif). There are mosaics in GDAL Virtual format (*.vrt), which can readily be opened in most Geographic Information Systems. <strong>Sub-directories:</strong> cso: Number of <em>Clear-Sky Observations </em>available for this study dem: <em>Digital Elevation Model</em> (SRTM filled with ASTER) vd-1.0: Vegetation Dynamics 1.0 (see paper) bap: <em>Best Available Pixel</em> composites trend: monotonic trends fitted on BAPs vd-2.0: Vegetation Dynamics 2.0 (see paper) trend monotonic trends fitted on <em>value of peak of season </em>phenometrics (VPS) monotonic trends fitted on value of <em>seasonal amplitude</em> phenometrics (VSA) change and piecewise monotonic trends fitted on <em>value of base level </em>phenometrics (VBL) syndromes syndrome classification for woody vegetation syndrome classification for herbaceous vegetation net cover change for woody vegetation net cover change for herbaceous vegetation <strong>Further information:</strong><br> For further information, please see the publication.<br> A web-visualization of this dataset is available here. <strong>Publication:</strong><br> Frantz, D., Hostert, P., Rufin, P., Ernst, S., Röder, A., van der Linden, S. (2022): Revisiting the past: Replicability of a historic long-term vegetation dynamics assessment in the era of big data analytics. Remote Sensing 14(3), 597; https://doi.org/10.3390/rs14030597 <strong>Funding: </strong><br> This publication was financially supported by Geo.X, the Research Network for Geosciences in Berlin and Potsdam under grant number SO_087_GeoX, and by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - Project-ID 414984028 - SFB 1404.
DOI: 10.5281/zenodo.5902671
title: Vegetation Dynamics on Crete

description: This dataset contains long-term vegetation dynamics assessments for the Island of Crete, Greece. 10+ years ago, Landsat time series analyses were inevitably limited to few expensive images from carefully selected acquisition dates. Yet, such a static selection may have introduced uncertainties when spatial or inter-annual variability in seasonal vegetation growth were large. As seminal pre-open-data-era papers are still heavily cited, variations of their workflows are still widely used, too. Thus, we here quantitatively assessed the level of agreement between an approach using carefully selected images, and a state-of-the-art analysis that uses all available images. Further details can be found in the corresponding paper. <strong>Temporal Extent: </strong>1984-2006. <strong>Spatial Extent:</strong> Crete, Greece <strong>Data format: </strong>The data come in tiles of 30x30km. The projection is EPSG:3035. The images are compressed GeoTiff files (*.tif). There are mosaics in GDAL Virtual format (*.vrt), which can readily be opened in most Geographic Information Systems. <strong>Sub-directories:</strong> cso: Number of <em>Clear-Sky Observations </em>available for this study dem: <em>Digital Elevation Model</em> (SRTM filled with ASTER) vd-1.0: Vegetation Dynamics 1.0 (see paper) bap: <em>Best Available Pixel</em> composites trend: monotonic trends fitted on BAPs vd-2.0: Vegetation Dynamics 2.0 (see paper) trend monotonic trends fitted on <em>value of peak of season </em>phenometrics (VPS) monotonic trends fitted on value of <em>seasonal amplitude</em> phenometrics (VSA) change and piecewise monotonic trends fitted on <em>value of base level </em>phenometrics (VBL) syndromes syndrome classification for woody vegetation syndrome classification for herbaceous vegetation net cover change for woody vegetation net cover change for herbaceous vegetation <strong>Further information:</strong><br> For further information, please see the publication.<br> A web-visualization of this dataset is available here. <strong>Publication:</strong><br> Frantz, D., Hostert, P., Rufin, P., Ernst, S., Röder, A., van der Linden, S. (2022): Revisiting the past: Replicability of a historic long-term vegetation dynamics assessment in the era of big data analytics. Remote Sensing 14(3), 597; https://doi.org/10.3390/rs14030597 <strong>Funding: </strong><br> This publication was financially supported by Geo.X, the Research Network for Geosciences in Berlin and Potsdam under grant number SO_087_GeoX, and by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - Project-ID 414984028 - SFB 1404.
DOI: 10.6084/m9.figshare.11907249
title: The Histoire ancienne jusqu'à César: Alignment (The Values of French)

description: <i>Alignment</i> maps the contents of a number of key manuscripts of the<i> Histoire ancienne jusqu'à César</i>, the earliest universal chronicle in French. The manuscripts are aligned to the paragraph division of the <i>Histoire ancienne</i> in Paris, Bibliothèque nationale de France, MS f. fr. 20125.<br><br>The latest version of the <i>Alignment</i> dataset can be visualised on<i>The Values of French </i>website: https://tvof.ac.uk/histoire-ancienne/alignment (available until 2030).<br><i>Alignment</i> is an output of the ERC-funded project <i>The Values of French Language and Literature in the European Middle Ages</i> (<i>TVOF</i>) (EU Horizon 2020, grant agreement no. 670726), directed by Prof. Simon Gaunt (PI) and hosted by the Department of French, King's College London. For more information, visit https://tvof.ac.uk/ (available until 2030).
DOI: 10.6084/m9.figshare.11907249.v2
title: The Histoire ancienne jusqu'à César: Alignment (The Values of French)

description: <i>Alignment</i> maps the contents of a number of key manuscripts of the<i> Histoire ancienne jusqu'à César</i>, the earliest universal chronicle in French. The manuscripts are aligned to the paragraph division of the <i>Histoire ancienne</i> in Paris, Bibliothèque nationale de France, MS f. fr. 20125.<br><br>The latest version of the <i>Alignment</i> dataset can be visualised on<i>The Values of French </i>website: https://tvof.ac.uk/histoire-ancienne/alignment (available until 2030).<br><i>Alignment</i> is an output of the ERC-funded project <i>The Values of French Language and Literature in the European Middle Ages</i> (<i>TVOF</i>) (EU Horizon 2020, grant agreement no. 670726), directed by Prof. Simon Gaunt (PI) and hosted by the Department of French, King's College London. For more information, visit https://tvof.ac.uk/ (available until 2030).
DOI: 10.6084/m9.figshare.11907081
title: The Histoire ancienne jusqu’à César: A Digital Edition (The Values of French)

description: <i>The</i> Histoire ancienne jusqu’à César: <i>A Digital Edition</i>, ed. by Hannah Morcos, Simon Gaunt, Simone Ventura, Maria Teresa Rachetta, Henry Ravenhall, Natasha Romanova, and Luca Barbieri; technical ed. Paul Caton, Ginestra Ferraro, Marcus Husar, and Geoffroy Noël (ISBN: 978-1-912466-15-3). <br>The latest version of the text can be browsed on <i>The Values of French </i>website: http://www.tvof.ac.uk/textviewer/ (available until 2030).<br>This edition is the primary output of the ERC-funded project <i>The Values of French Language and Literature in the European Middle Ages</i> (EU Horizon 2020, grant agreement no. 670726), directed by Prof. Simon Gaunt (PI) and hosted by the Department of French, King's College London. For more information, visit https://tvof.ac.uk/ (available until 2030).<br>
DOI: 10.6084/m9.figshare.11907081.v2
title: The Histoire ancienne jusqu’à César: A Digital Edition (The Values of French)

description: <i>The</i> Histoire ancienne jusqu’à César: <i>A Digital Edition</i>, ed. by Hannah Morcos, Simon Gaunt, Simone Ventura, Maria Teresa Rachetta, Henry Ravenhall, Natasha Romanova, and Luca Barbieri; technical ed. Paul Caton, Ginestra Ferraro, Marcus Husar, and Geoffroy Noël (ISBN: 978-1-912466-15-3). <br>The latest version of the text can be browsed on <i>The Values of French </i>website: http://www.tvof.ac.uk/textviewer/ (available until 2030).<br>This edition is the primary output of the ERC-funded project <i>The Values of French Language and Literature in the European Middle Ages</i> (EU Horizon 2020, grant agreement no. 670726), directed by Prof. Simon Gaunt (PI) and hosted by the Department of French, King's College London. For more information, visit https://tvof.ac.uk/ (available until 2030).<br>
DOI: 10.6084/m9.figshare.11830386
title: The Histoire ancienne jusqu'à César: Lemmatisation and Search (The Values of French)

description: The lemmatisation of <i>The </i>Histoire ancienne jusqu’à César<i>: A Digital Edition</i> is a key output of <i>The Values of French. </i>This dataset offers significant opportunities for linguistic and lexical analyses of medieval French.<br>The latest version of this lemmatised dataset can be browsed on the search page of <i>The Values of French</i>: https://tvof.ac.uk/search/? (available until 2030).<br>This is an output of the ERC-funded project <i>The Values of French Language and Literature in the European Middle Ages</i> (EU Horizon 2020, grant agreement no. 670726), directed by Prof. Simon Gaunt (PI) and hosted by the Department of French, King's College London. For more information, visit https://tvof.ac.uk/ (available until 2030).<br>
DOI: 10.6084/m9.figshare.11830386.v2
title: The Histoire ancienne jusqu'à César: Lemmatisation and Search (The Values of French)

description: The lemmatisation of <i>The </i>Histoire ancienne jusqu’à César<i>: A Digital Edition</i> is a key output of <i>The Values of French. </i>This dataset offers significant opportunities for linguistic and lexical analyses of medieval French.<br>The latest version of this lemmatised dataset can be browsed on the search page of <i>The Values of French</i>: https://tvof.ac.uk/search/? (available until 2030).<br>This is an output of the ERC-funded project <i>The Values of French Language and Literature in the European Middle Ages</i> (EU Horizon 2020, grant agreement no. 670726), directed by Prof. Simon Gaunt (PI) and hosted by the Department of French, King's College London. For more information, visit https://tvof.ac.uk/ (available until 2030).<br>