cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12135396.v1
title: Additional file 2 of Coordinated mechanisms of leaves and roots in response to drought stress underlying full-length transcriptome profiling in Vicia sativa L

description: Additional file 2 Table S2. The expression profile of oxidation-reduction process category enriched transcripts and their annotation in Pfam, Swissprot and nr database.
DOI: 10.6084/m9.figshare.12135399
title: Additional file 3 of Coordinated mechanisms of leaves and roots in response to drought stress underlying full-length transcriptome profiling in Vicia sativa L

description: Additional file 3 Table S3. The expression profile of defense response category enriched transcripts and their annotation in Pfam, Swissprot and nr database.
DOI: 10.6084/m9.figshare.12135405
title: Additional file 5 of Coordinated mechanisms of leaves and roots in response to drought stress underlying full-length transcriptome profiling in Vicia sativa L

description: Additional file 5 Table S5. DEGs involved in the “Plant hormone signal transduction”, “Starch and sucrose metabolism” and “Arginine and proline metabolism” pathways under drought stress (Table S1a-c).
DOI: 10.6084/m9.figshare.12135405.v1
title: Additional file 5 of Coordinated mechanisms of leaves and roots in response to drought stress underlying full-length transcriptome profiling in Vicia sativa L

description: Additional file 5 Table S5. DEGs involved in the “Plant hormone signal transduction”, “Starch and sucrose metabolism” and “Arginine and proline metabolism” pathways under drought stress (Table S1a-c).
DOI: 10.6084/m9.figshare.10047704
title: Additional file 11: Table S6. of A microsatellite diversity analysis and the development of core-set germplasm in a large hulless barley (Hordeum vulgare L.) collection

description: Significance of the correlations between the population structure and several clustering factors. The p values were calculated using the contingency table test. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.10047704.v1
title: Additional file 11: Table S6. of A microsatellite diversity analysis and the development of core-set germplasm in a large hulless barley (Hordeum vulgare L.) collection

description: Significance of the correlations between the population structure and several clustering factors. The p values were calculated using the contingency table test. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.12135408
title: Additional file 6 of Coordinated mechanisms of leaves and roots in response to drought stress underlying full-length transcriptome profiling in Vicia sativa L

description: Additional file 6 Table S6. The qRT-PCR primers used in this study.
DOI: 10.6084/m9.figshare.22621162.v1
title: Additional file 1 of Multiple founding paternal lineages inferred from the newly-developed 639-plex Y-SNP panel suggested the complex admixture and migration history of Chinese people

description: Additional file 1: Table S1 Haplogroup distribution of all studied populations. Table S2 Haplogroup frequency of 33 Chinese populations. Table S3 Genetic distances among 33 Chinese populations. Table S4 Haplogroups of 4727 people from 114 populations.
DOI: 10.6084/m9.figshare.10047707
title: Additional file 1: Table S1. of A microsatellite diversity analysis and the development of core-set germplasm in a large hulless barley (Hordeum vulgare L.) collection

description: Accession information of 562 hulless barley accessions in the present study. (XLSX 57Â kb)
DOI: 10.6084/m9.figshare.10047707.v1
title: Additional file 1: Table S1. of A microsatellite diversity analysis and the development of core-set germplasm in a large hulless barley (Hordeum vulgare L.) collection

description: Accession information of 562 hulless barley accessions in the present study. (XLSX 57Â kb)
DOI: 10.6084/m9.figshare.12135396
title: Additional file 2 of Coordinated mechanisms of leaves and roots in response to drought stress underlying full-length transcriptome profiling in Vicia sativa L

description: Additional file 2 Table S2. The expression profile of oxidation-reduction process category enriched transcripts and their annotation in Pfam, Swissprot and nr database.
DOI: 10.25345/c57d2qj7t
title: MassIVE MSV000094040 - Regulation of Glycogen Synthase kinase 3beta by phosphorylation and O-beta-linked N-acetylglucosaminylation: implications on tau protein phosphorylation
title: Glycogen synthase kinase 3 (GSK3) plays a pivotal role in signaling pathways related to insulin metabolism and in the pathogenesis of Alzheimer s disease (AD) and other neurodegenerative disorders. More particularly, the GSK3beta isoform is involved in AD-associated tau pathology as one of the major kinases involved in the hyperphosphorylation of the microtubule-associated tau protein, one of the neuropathological hallmarks of AD. As a constitutively active serine/threonine proline-directed kinase, GSK3 is inactivated by Akt/PKB-mediated phosphorylation of Ser9 at the N-terminal disordered domain. Furthermore, GSK3 activity requires for most of its substrates a priming (pre-phosphorylation) by another kinase that allows binding of the substrate in a phosphate-specific pocket near to the active site. It has been shown that GSK3 is also post-translationally modified by O-linked beta-N-acetylglucosaminylation (O-GlcNAcylation) with still unknown functional implications. We have found that binding of the phosphorylated, active form of Akt inhibits GSK3beta kinase activity on both primed and unprimed tau substrates, and Akt-mediated Ser9 phosphorylation restores the GSK3beta kinase activity on primed tau only. Therefore, Ser9 phosphorylation only inactivates GSK3 kinase activity on an unprimed substrate. Additionally, we have shown that GSK3beta is O-GlcNAcylated at multiple sites in both its disordered N- and C-terminal domains including Ser9, but O-GlcNAcylation does not alter kinase activity nor the Akt-mediated regulation of GSK3.
DOI: 10.6084/m9.figshare.10047710
title: Additional file 2: Table S2. of A microsatellite diversity analysis and the development of core-set germplasm in a large hulless barley (Hordeum vulgare L.) collection

description: Information of the 73 SSR primers based on the hulless barley reference genome. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.10047710.v1
title: Additional file 2: Table S2. of A microsatellite diversity analysis and the development of core-set germplasm in a large hulless barley (Hordeum vulgare L.) collection

description: Information of the 73 SSR primers based on the hulless barley reference genome. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.10047716
title: Additional file 4: Figure S2. of A microsatellite diversity analysis and the development of core-set germplasm in a large hulless barley (Hordeum vulgare L.) collection

description: Information of the genetic diversity for the SSR markers used in this study. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.10047716.v1
title: Additional file 4: Figure S2. of A microsatellite diversity analysis and the development of core-set germplasm in a large hulless barley (Hordeum vulgare L.) collection

description: Information of the genetic diversity for the SSR markers used in this study. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.25187558
title: RawData_Simulations_Schmitz_etal.

description: This file contains simulation data used in Schmitz et al. (2023) "Predicting bacterial interaction outcomes from monoculture growth and supernatant assays" available on bioRxiv.
DOI: 10.6084/m9.figshare.10047722
title: Additional file 6: Table S4. of A microsatellite diversity analysis and the development of core-set germplasm in a large hulless barley (Hordeum vulgare L.) collection

description: Genetic differentiation coefficient (FST) and Nei1972 distance between the pairwise structural inferred subpopulations. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.10047722.v1
title: Additional file 6: Table S4. of A microsatellite diversity analysis and the development of core-set germplasm in a large hulless barley (Hordeum vulgare L.) collection

description: Genetic differentiation coefficient (FST) and Nei1972 distance between the pairwise structural inferred subpopulations. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.10047731
title: Additional file 9: Table S5. of A microsatellite diversity analysis and the development of core-set germplasm in a large hulless barley (Hordeum vulgare L.) collection

description: Information on the fingerprint identifiers for the 200 barley core accessions. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.10047731.v1
title: Additional file 9: Table S5. of A microsatellite diversity analysis and the development of core-set germplasm in a large hulless barley (Hordeum vulgare L.) collection

description: Information on the fingerprint identifiers for the 200 barley core accessions. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.10047734
title: Additional file 1: of Analysis of the differential urinary protein profile in IgA nephropathy patients of Uygur ethnicity

description: Table S1. Clinical characteristics of Uygur normal controls and IgAN patients. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.10047734.v1
title: Additional file 1: of Analysis of the differential urinary protein profile in IgA nephropathy patients of Uygur ethnicity

description: Table S1. Clinical characteristics of Uygur normal controls and IgAN patients. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.10047737
title: Additional file 2: of Analysis of the differential urinary protein profile in IgA nephropathy patients of Uygur ethnicity

description: Table S2. Quantitative protein and peptide data. Quantitative values of peptides and proteins in the Uygur control and IgAN patients in runs 1 and 2 are shown. The sequence coverage of each protein in runs 1 and 2 are shown. (XLSX 421 kb)
DOI: 10.6084/m9.figshare.10047737.v1
title: Additional file 2: of Analysis of the differential urinary protein profile in IgA nephropathy patients of Uygur ethnicity

description: Table S2. Quantitative protein and peptide data. Quantitative values of peptides and proteins in the Uygur control and IgAN patients in runs 1 and 2 are shown. The sequence coverage of each protein in runs 1 and 2 are shown. (XLSX 421 kb)
DOI: 10.6084/m9.figshare.10047740
title: Additional file 3: of Analysis of the differential urinary protein profile in IgA nephropathy patients of Uygur ethnicity

description: Table S3. Differentially expressed proteins in Uygur IgAN. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.10047740.v1
title: Additional file 3: of Analysis of the differential urinary protein profile in IgA nephropathy patients of Uygur ethnicity

description: Table S3. Differentially expressed proteins in Uygur IgAN. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.10047743
title: Additional file 4: of Analysis of the differential urinary protein profile in IgA nephropathy patients of Uygur ethnicity

description: Table S4. Analysis the origin of the 4 candidate markers. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.10047743.v1
title: Additional file 4: of Analysis of the differential urinary protein profile in IgA nephropathy patients of Uygur ethnicity

description: Table S4. Analysis the origin of the 4 candidate markers. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.10047746
title: Additional file 5: of Analysis of the differential urinary protein profile in IgA nephropathy patients of Uygur ethnicity

description: Table S5. Lists of differentially expressed proteins in IgAN obtained in previous studies. (XLS 66 kb)
DOI: 10.6084/m9.figshare.10047746.v1
title: Additional file 5: of Analysis of the differential urinary protein profile in IgA nephropathy patients of Uygur ethnicity

description: Table S5. Lists of differentially expressed proteins in IgAN obtained in previous studies. (XLS 66 kb)
DOI: 10.5281/zenodo.10218554
title: VATICAN TRYP ADVISOR

description: The information was extracted from Trip Advisor, specifically from the web Vatican City. More specifically OTRs written in English on Trip Advisor about "things to do" in Vatican City were retrieved in July 2021
DOI: 10.5281/zenodo.10218555
title: VATICAN TRYP ADVISOR

description: The information was extracted from Trip Advisor, specifically from the web Vatican City. More specifically OTRs written in English on Trip Advisor about "things to do" in Vatican City were retrieved in July 2021
DOI: 10.6084/m9.figshare.22621360.v1
title: Additional file 1 of The peanut root exudate increases the transport and metabolism of nutrients and enhances the plant growth-promoting effects of burkholderia pyrrocinia strain P10

description: Additional file 1. Supplement Table. Table S1 Summary for the transcriptome assembly, Table S2 The FPKM of differential expressed genes (DEGs) in different samples, Table S3 Composition of peanut root exudates analyzed by gas chromatography-mass spectrometry, Table S4 Information of primers and gene used in this study, Table S5 Reaction Procedure of Q-RT-PCR.
DOI: 10.6084/m9.figshare.24203550
title: The prognostic value of C-reactive protein to albumin ratio in patients with sepsis: a systematic review and meta-analysis

description: This study aimed to determine whether the C-reactive protein-to-albumin ratio (CAR) can serve as a prognostic marker in patients with sepsis. Chinese and English databases were searched to retrieve the included literature. The pooled sensitivity (SEN), specificity (SPE), positive likelihood ratio (PLR), negative likelihood ratio (NLR), diagnostic odds ratio (DOR), and area under the curve (AUC) of the summary receiver operating characteristic (SROC) with their 95% confidence interval (CI) were calculated using the bivariate model. Moreover, the hazard ratio (HR) and 95% CI were calculated using the random effect model. Nine articles comprising 3224 patients with sepsis were included in the meta-analysis. The pooled SEN was 0.73 (95% CI 0.65–0.80), the pooled SPE was 0.78 (95% CI 0.69–0.84), the pooled PLR was 3.29 (95% CI 2.15–5.03), the pooled NLR was 0.35 (95% CI 0.24–0.49), and the pooled DOR was 9.50 (95% CI 4.38–20.59). The AUC under the SROC was 0.82 (95% CI 0.78–0.85) for the prognostic meta-analysis. The pooled HR was 1.10 (95% CI 1.02–1.18). This meta-analysis suggests that a high CAR level is associated with increased mortality and a poor prognosis.
DOI: 10.6084/m9.figshare.24203550.v1
title: The prognostic value of C-reactive protein to albumin ratio in patients with sepsis: a systematic review and meta-analysis

description: This study aimed to determine whether the C-reactive protein-to-albumin ratio (CAR) can serve as a prognostic marker in patients with sepsis. Chinese and English databases were searched to retrieve the included literature. The pooled sensitivity (SEN), specificity (SPE), positive likelihood ratio (PLR), negative likelihood ratio (NLR), diagnostic odds ratio (DOR), and area under the curve (AUC) of the summary receiver operating characteristic (SROC) with their 95% confidence interval (CI) were calculated using the bivariate model. Moreover, the hazard ratio (HR) and 95% CI were calculated using the random effect model. Nine articles comprising 3224 patients with sepsis were included in the meta-analysis. The pooled SEN was 0.73 (95% CI 0.65–0.80), the pooled SPE was 0.78 (95% CI 0.69–0.84), the pooled PLR was 3.29 (95% CI 2.15–5.03), the pooled NLR was 0.35 (95% CI 0.24–0.49), and the pooled DOR was 9.50 (95% CI 4.38–20.59). The AUC under the SROC was 0.82 (95% CI 0.78–0.85) for the prognostic meta-analysis. The pooled HR was 1.10 (95% CI 1.02–1.18). This meta-analysis suggests that a high CAR level is associated with increased mortality and a poor prognosis.
DOI: 10.17632/8ddc8gscxn.1
title: “Lactate thresholds and performance in young cross country skiers using ski rollers in laboratory test in in hypoxia and normoxia”.

description: This data explores the lactate thresholds and the potential influence of altitude on performance in junior XC skiers. Using roller skis in laboratory treadmill, 9 XC skiers competing at national level, underwent laboratory testing in normoxic and hypoxic conditions. A Graded Exercise Test (GXT) was conducted, heart rate, slope and lactate were taken. External and internal load were calculated at lactate values of baseline plus increase of 1 mmol/L (Bsln+1), Onset of Blood Lactate of 4 mmol/L (OBLA4) and Dmax-modificated (Dmaxmod). 

The files are divided by variables of study, with external and internal load at differents theresholds calculated.
DOI: 10.6084/m9.figshare.22621784
title: Additional file 1 of Belowground microbiota analysis indicates that Fusarium spp. exacerbate grapevine trunk disease

description: Additional file 1: Table S1. The environmental temperature conditions during the seasons of 2019 and 2020. Table S2. The physical and chemical characteristics of the soil in the sampling vineyard. Table S3. The records of chemical agents and fertilizers in the sampling vineyard. Table S4. The reads numbers used to analyze in this study. Table S5. Alpha diversity index values for fungal communities in different soil–plant compartments. PE: rhizoPlane and Endophyte; R: rhizosphere; and B: bulk soils. Samples were collected from grapevine trunk disease (GTD) asymptomatic (As) and symptomatic (S) grapevines in 2019 (0.19) and 2020 (0.20). Table S6. Operational taxonomic units (OTUs) specific to asymptomatic or symptomatic samples. Table S7. The relative abundances of grapevine trunk disease (GTD)-associated fungi annotated at the species and genus levels detected with ITS amplicon sequencing data. Table S8. Grapevine trunk disease (GTD)-associated fungi exhibiting significant differences in relative abundance between comparison groups based on ITS amplicon sequencing. Statistical differences were evaluated with Wilcoxon tests. Table S9. Disease index values for grapevines inoculated with isolates in this study.
DOI: 10.6084/m9.figshare.22621403.v1
title: Additional file 7 of Modulation of long noncoding RNA (lncRNA) and messenger RNA (mRNA) expression in the liver of Beagle dogs by Toxocara canis infection

description: Additional file 7: Table S5. The co-localization of the mRNAs of the differentially expressed lncRNAs at three stages post Toxocara canis infection.
DOI: 10.6084/m9.figshare.22621415.v1
title: Additional file 11 of Modulation of long noncoding RNA (lncRNA) and messenger RNA (mRNA) expression in the liver of Beagle dogs by Toxocara canis infection

description: Additional file 11: Table S7. Immune- or inflammation-related GO terms of the differentially expressed lncRNAs in the liver of puppies at three stages post Toxocara canis infection.
DOI: 10.6084/m9.figshare.22621468.v1
title: Additional file 2 of Crotonylation of GAPDH regulates human embryonic stem cell endodermal lineage differentiation and metabolic switch

description: Additional file 2. Table S1. Up-regulated genes in crotonate treated H9-LTR7 GFP cells; Table S2. Down-regulated genes in crotonate treated H9-LTR7 GFP cells; Table S3. Up-regulated genes in crotonate treated hEPS cells; Table S4. Down-regulated genes in crotonate treated hEPS cells; Table S5. Large-scale analysis of lysine crotonylated proteins in crotonate treated pluripotent stem cells; Table S6. Gene ontology analysis of crotonylated proteins in response to crotonate treatment that were identified by LC/MS-MS; Table S7. Quantitative PCR primers used in this study.
DOI: 10.17632/s2w7rjwz49.1
title: CO2Wounds-V2: Extended Chronic Wounds Dataset From Leprosy Patients

description: This dataset comprises 607 labeled images (for training and validation) and 157 unlabeled images (for testing) of chronic wounds collected using traditional smartphone cameras by medical staff during daily sessions of wound treatment for leprosy patients in a hospital in Colombia. This dataset aims to help advance the development and evaluation of image segmentation models for chronic wounds.
DOI: 10.6084/m9.figshare.22621468
title: Additional file 2 of Crotonylation of GAPDH regulates human embryonic stem cell endodermal lineage differentiation and metabolic switch

description: Additional file 2. Table S1. Up-regulated genes in crotonate treated H9-LTR7 GFP cells; Table S2. Down-regulated genes in crotonate treated H9-LTR7 GFP cells; Table S3. Up-regulated genes in crotonate treated hEPS cells; Table S4. Down-regulated genes in crotonate treated hEPS cells; Table S5. Large-scale analysis of lysine crotonylated proteins in crotonate treated pluripotent stem cells; Table S6. Gene ontology analysis of crotonylated proteins in response to crotonate treatment that were identified by LC/MS-MS; Table S7. Quantitative PCR primers used in this study.
DOI: 10.5281/zenodo.5708071
title: MichalGath/Wayfinding Behavior in MultiLevel Buildings Dataset

description: This dataset captures the nuanced dynamics of wayfinding behavior within systematically manipulated virtual buildings, designed to enhance visibility between floors. It encompasses observations of human participants, shortest path agents, and cognitive agents navigating through six predefined tasks. Key features include:



Wayfinding behavior of 149 participants

Wayfinding behavior of shortest path agents

Wayfinding behavior of cognitive agents
DOI: 10.5281/zenodo.5708072
title: MichalGath/Wayfinding Behavior in MultiLevel Buildings Dataset

description: This dataset captures the nuanced dynamics of wayfinding behavior within systematically manipulated virtual buildings, designed to enhance visibility between floors. It encompasses observations of human participants, shortest path agents, and cognitive agents navigating through six predefined tasks. Key features include:



Wayfinding behavior of 149 participants

Wayfinding behavior of shortest path agents

Wayfinding behavior of cognitive agents
DOI: 10.6084/m9.figshare.22621640.v1
title: Additional file 4 of PES1 reduces CD8+ T cell infiltration and immunotherapy sensitivity via interrupting ILF3-IL15 complex in esophageal squamous cell carcinoma

description: Additional file 4. Additional dataset S3.
DOI: 10.6084/m9.figshare.22621643
title: Additional file 5 of PES1 reduces CD8+ T cell infiltration and immunotherapy sensitivity via interrupting ILF3-IL15 complex in esophageal squamous cell carcinoma

description: Additional file 5. Additional dataset S4.
DOI: 10.6084/m9.figshare.22621703.v1
title: Additional file 2 of Aspartate beta-hydroxylase domain containing 1 as a prognostic marker associated with immune infiltration in skin cutaneous melanoma

description: Supplementary Material 2
DOI: 10.5281/zenodo.10634349
title: Role of Atmospheric River Rapids in the April 2023 Middle East Flash Floods

description: Data used in the study "Role of Atmospheric River Rapids in the April 2023 Middle East Flash Floods"
DOI: 10.5281/zenodo.10634350
title: Role of Atmospheric River Rapids in the April 2023 Middle East Flash Floods

description: Data used in the study "Role of Atmospheric River Rapids in the April 2023 Middle East Flash Floods"
DOI: 10.5281/zenodo.7157075
title: Individual tree data of the temporary test plot Neusorgefeld 5138 - VERMOS project

description: This dataset is an artificial dataset of the dataset of the temporary trial plot in Neusorgefeld 5138 from the VERMOS project. The original dataset is significantly larger, the adaptation was made for a planned publication by Chris Wudel and was also carried out by him.
DOI: 10.5281/zenodo.7157076
title: Individual tree data of the temporary test plot Neusorgefeld 5138 - VERMOS project

description: This dataset is an artificial dataset of the dataset of the temporary trial plot in Neusorgefeld 5138 from the VERMOS project. The original dataset is significantly larger, the adaptation was made for a planned publication by Chris Wudel and was also carried out by him.
DOI: 10.6084/m9.figshare.10047848
title: Additional file 1: of Helicobacter pylori infection associated with an increased risk of colorectal adenomatous polyps in the Chinese population

description: Supporting information for the pathway analysis. Additional file 1 presents the detailed information of each and all relationships identified from the pathway analysis (Fig. 1), including relationship type and the supporting references for each relationship (title, publication year, author and related sentences).(XLSX 22 kb)