DOI: 10.17617/3.5s92go
title: CRISPR-inhibition screen for lncRNAs linked to melanoma growth and metastasis

description: These dataset contain the files of RNA-Seq data.
Description format: File name:Description:replicate ID:Figure related to 

501mel_RepI.fq1.fastq.gz/501mel_RepI.fq2.fastq.gz 501mel_par_ctrl_1 tech.Rep1 related to Figure 4 and S5
501mel_RepII.fq1.fastq.gz/501mel_RepII.fq2.fastq.gz 501mel_par_ctrl_2 tech.Rep2 related to Figure 4 and S5
501mel_sg6_XLOC_d3_I.fq1.fastq.gz/501mel_sg6_XLOC_d3_I.fq2.fastq.gz 501mel_sg6_XLOC_d3_I tech.Rep1 related to Figure 4 and S5
501mel_sg6_XLOC_d3_II.fq1.fastq.gz/501mel_sg6_XLOC_d3_II.fq2.fastq.gz 501mel_sg6_XLOC_d3_II tech.Rep2 related to Figure 4 and S5
501mel_sg6_XLOC_d5_I.fq1.fastq.gz/501mel_sg6_XLOC_d5_I.fq2.fastq.gz 501mel_sg6_XLOC_d5_I tech.Rep1 related to Figure 4 and S5
501mel_sg6_XLOC_d5_II.fq1.fastq.gz/501mel_sg6_XLOC_d5_II.fq2.fastq.gz 501mel_sg6_XLOC_d5_II tech.Rep2 related to Figure 4 and S5
501mel_sg7_XLOC_d3_I.fq1.fastq.gz/501mel_sg7_XLOC_d3_I.fq2.fastq.gz 501mel_sg7_XLOC_d3_I tech.Rep1 related to Figure 4 and S5
501mel_sg7_XLOC_d3_II.fq1.fastq.gz/501mel_sg7_XLOC_d3_II.fq2.fastq.gz 501mel_sg7_XLOC_d3_II tech.Rep2 related to Figure 4 and S5
501mel_sg7_XLOC_d5_I.fq1.fastq.gz/501mel_sg7_XLOC_d5_I.fq2.fastq.gz 501mel_sg7_XLOC_d5_I tech.Rep1 related to Figure 4 and S5
501mel_sg7_XLOC_d5_II.fq2.fastq.gz/501mel_sg7_XLOC_d5_II.fq1.fastq.gz 501mel_sg7_XLOC_d5_II tech.Rep2 related to Figure 4 and S5
SK-MEL239_2x_resist_R2_GATCAG_L003_R1_001.fastq SK-Mel_239_2x (BRAFi/MEKi resistant)_R1 tech.Rep1 related to Figure S1
SK-MEL239_2x_resist_R3_TAGCTT_L003_R1_001.fastq SK-Mel_239_2x (BRAFi/MEKi resistant)_R2 tech.Rep2 related to Figure S1
description: These dataset contain the files of ChIP-Seq data.
Description format: File name:description:replicate ID:Figure related to ChIP-Seq

SK-Mel_293_K27ac_R1_GATCAG_L002_R1_001.fastq SK-Mel-239 H3K27ac tech.Rep1 related to Figure 1, 2 and S3
SK-Mel_293_K27ac_R2_TAGCTT_L002_R1_001.fastq SK-Mel-239 H3K27ac tech.Rep2 related to Figure 1, 2 and S3
SK-Mel_293_K27ac_R3_GGCTAC_L002_R1_001.fastq SK-Mel-239 H3K27ac tech.Rep3 related to Figure 1, 2 and S3
SK-Mel_293_K27ac_R1_input_GCCAAT_L002_R1_001.fastq SK-Mel-239 H3K27ac Input tech.Rep1 related to Figure 1, 2 and S3
SK-Mel_293_K27ac_R2_input_CAGATC_L002_R1_001.fastq SK-Mel-239 H3K27ac Input tech.Rep2 related to Figure 1, 2 and S3
SK-Mel_293_K27ac_R3_input_CTTGTA_L002_R1_001.fastq SK-Mel-239 H3K27ac Input tech.Rep3 related to Figure 1, 2 and S3
SK-Mel_293_K4m3_R1_ATCACG_L002_R1_001.fastq SK-Mel-239 H3K3me3 tech.Rep1 related to Figure 1, 2 and S3
SK-Mel_293_K4m3_R2_TTAGGC_L002_R1_001.fastq SK-Mel-239 H3K3me3 tech.Rep2 related to Figure 1, 2 and S3
SK-Mel_293_K4m3_R3_ACTTGA_L002_R1_001.fastq SK-Mel-239 H3K3me3 tech.Rep3 related to Figure 1, 2 and S3
SK-Mel_293_K4m3_R1_input_CGATGT_L002_R1_001.fastq SK-Mel-239 H3K3me3 Input tech.Rep1 related to Figure 1, 2 and S3
SK-Mel_293_K4m3_R2_input_TGACCA_L002_R1_001.fastq SK-Mel-239 H3K3me3 Input tech.Rep2 related to Figure 1, 2 and S3
SK-Mel_293_K4m3_R3_input_ACAGTG_L002_R1_001.fastq SK-Mel-239 H3K3me3 Input tech.Rep3 related to Figure 1, 2 and S3
SK-MEL239_2x_resist_K4me3_Input_R1_ATCACG_L003_R1_001.fastq SK-Mel-239_2x (BRAFi/MEKi resistant) H3K4me3 Input tech.Rep1 related to Figure S1
SK-MEL239_2x_resist_K4me3_Input_R2_TTAGGC_L003_R1_001.fastq SK-Mel-239_2x (BRAFi/MEKi resistant) H3K4me3 Input tech.Rep2 related to Figure S1
SK-MEL239_2x_resist_K4me3_R1_ACAGTG_L003_R1_001.fastq SK-Mel-239_2x (BRAFi/MEKi resistant) H3K4me3 tech.Rep1 related to Figure S1
SK-MEL239_2x_resist_K4me3_R2_GCCAAT_L003_R1_001.fastq SK-Mel-239_2x (BRAFi/MEKi resistant) H3K4me3 tech.Rep2 related to Figure S1
SK-MEL239_2x_resist_K27ac_Input_R1_GGCTAC_L003_R1_001.fastq SK-Mel-239_2x (BRAFi/MEKi resistant) H3K27ac Input tech.Rep1 related to Figure S1
SK-MEL239_2x_resist_K27ac_Input_R2_AGTCAA_L003_R1_001.fastq SK-Mel-239_2x (BRAFi/MEKi resistant) H3K27ac Input tech.Rep2 related to Figure S1
SK-MEL239_2x_resist_K27ac_R1_CAGATC_L003_R1_001.fastq SK-Mel-239_2x (BRAFi/MEKi resistant) H3K27ac tech.Rep1 related to Figure S1
SK-MEL239_2x_resist_K27ac_R2_CTTGTA_L003_R1_001.fastq SK-Mel-239_2x (BRAFi/MEKi resistant) H3K27ac tech.Rep2 related to Figure S1
WM1361a_K4me3_input_R2_TGACCA_L002_R1_001.fastq WM1361a_K4me3_Input tech.Rep1 related to Figure 1, 2 and S3
WM1361a_K4me3_input_R3_ACAGTG_L002_R1_001.fastq WM1361a_K4me3_Input tech.Rep2 related to Figure 1, 2 and S3
WM1361a_K4me3_R2_TGACCA_L001_R1_001.fastq WM1361a_K4me3 tech.Rep1 related to Figure 1, 2 and S3
WM1361a_K4me3_R3_ACAGTG_L001_R1_001.fastq WM1361a_K4me3 tech.Rep2 related to Figure 1, 2 and S3
WM1361a_K27ac_input_R1_GCCAAT_L002_R1_001.fastq WM1361a_Input tech.Rep1 related to Figure 1, 2 and S3
WM1361a_K27ac_input_R2_CAGATC_L002_R1_001.fastq WM1361a_Input tech.Rep2 related to Figure 1, 2 and S3
WM1361a_K27ac_R1_GCCAAT_L001_R1_001.fastq.gz WM1361a_H3K27ac tech.Rep1 related to Figure 1, 2 and S3
WM1361a_K27ac_R2_CAGATC_L001_R1_001.fastq.gz WM1361a_H3K27ac tech.Rep2 related to Figure 1, 2 and S3
description: These dataset contain the files of CRISPRi screen data.
Description format: File name:Description:replicate ID:Figure related to 

a300a0a5223c11dcdae38bb0f19221b5 SCREEN_SAMPLE_1_EKDL210000887-1a_HWYVTDSXY_L4_1.fq.gz/0315aad3d447492d4f5ad4ac3b8da109 SCREEN_SAMPLE_1_EKDL210000887-1a_HWYVTDSXY_L4_2.fq.gz 501mel_teton_dCas9_KRAB, day 6 +dox screen 2.0-tech. Rep1 related to Figure 2 and S3
db1110a2ef5f7da2b870f22fb93503bf SCREEN_SAMPLE_2_EKDL210000888-1a_HWWYYDSXY_L4_1.fq.gz/d33b7af8329cb3d3062db7d4f327251f SCREEN_SAMPLE_2_EKDL210000888-1a_HWWYYDSXY_L4_2.fq.gz/ 501mel_teton_dCas9_KRAB, day 6 +dox screen 2.0-tech. Rep2 related to Figure 2 and S3
c5bc9e1af349995b1502bd313ea035c4 SCREEN_SAMPLE_3_EKDL210000889-1a_HWWYYDSXY_L4_1.fq.gz/92b6c17100b082296aeff7a5be6a7ec5 SCREEN_SAMPLE_3_EKDL210000889-1a_HWWYYDSXY_L4_2.fq.gz 501mel_teton_dCas9_KRAB Negative Control, day 27 -dox screen 2.0-tech. Rep1 related to Figure 2 and S3
c7c320b63ef6ed609a57d6654dad4c28 SCREEN_SAMPLE_4_EKDL210000890-1a_HWWYYDSXY_L4_1.fq.gz/7bbda6a7ea047a60349c64cd219709a1 SCREEN_SAMPLE_4_EKDL210000890-1a_HWWYYDSXY_L4_2.fq.gz 501mel_teton_dCas9_KRAB, day 13 +dox screen 2.0-tech. Rep1 related to Figure 2 and S3
bf3ae303b3c470b592d74689bf3dd011 SCREEN_SAMPLE_5_EKDL210000891-1a_HWWYYDSXY_L4_1.fq.gz/e766c22a7043d0b096523b1901553907 SCREEN_SAMPLE_5_EKDL210000891-1a_HWWYYDSXY_L4_2.fq.gz 501mel_teton_dCas9_KRAB, day 13 +dox screen 2.0-tech. Rep2 related to Figure 2 and S3
dac4f32bbc50d6fa0dadc876fdab54a0 SCREEN_SAMPLE_6_EKDL210000892-1a_HWWYYDSXY_L4_1.fq.gz/461e4975a509c46c31382194fc06ca5a SCREEN_SAMPLE_6_EKDL210000892-1a_HWWYYDSXY_L4_2.fq.gz 501mel_teton_dCas9_KRAB, day 20 +dox screen 2.0-tech. Rep1 related to Figure 2 and S3
f07c3a6c27c4bc83365c9c51d007b7ee SCREEN_SAMPLE_7_EKDL210000893-1a_HWWYYDSXY_L4_1.fq.gz/a5a5c5659c60dbabda56ad69125b81b4 SCREEN_SAMPLE_7_EKDL210000893-1a_HWWYYDSXY_L4_2.fq.gz 501mel_teton_dCas9_KRAB, day 20 +dox screen 2.0-tech. Rep2 related to Figure 2 and S3
a1e18d3a2e346fb079d2c702ebb46668 SCREEN_SAMPLE_8_EKDL210000894-1a_HWWYYDSXY_L4_1.fq.gz/a8636b52e83d45ba393878ba1597472d SCREEN_SAMPLE_8_EKDL210000894-1a_HWWYYDSXY_L4_2.fq.gz 501mel_teton_dCas9_KRAB,day 27 +dox screen 2.0-tech. Rep1 related to Figure 2 and S3
ad4772d3c518ad03dc03aec35f6f8877 SCREEN_SAMPLE_9_EKDL210000895-1a_HWYVTDSXY_L4_1.fq.gz/5c4d85577e17b3660556f47be8494821 SCREEN_SAMPLE_9_EKDL210000895-1a_HWYVTDSXY_L4_2.fq.gz 501mel_teton_dCas9_KRAB, day 27 +dox screen 2.0-tech. Rep2 related to Figure 2 and S3
00ad03ba6af76397c06051dd885a3e30 SCREEN_SAMPLE_10_EKDL210000896-1a_HWWYYDSXY_L4_1.fq.gz/9373e5045ff2190012f483f30f01dc59 SCREEN_SAMPLE_10_EKDL210000896-1a_HWWYYDSXY_L4_2.fq.gz 501mel_teton_dCas9_KRAB Negative Control, day 27 -dox screen 2.0-tech. Rep2 related to Figure 2 and S3
D8neg_D-4_S1_L001_R1_001.fastq 501mel_KRAB_dCas9_clone D8 day -4 ctrl screen 1.0-tech. Rep1 related to Figure 2 and S3
D8neg_D-4_S1_L002_R1_001.fastq 501mel_KRAB_dCas9_clone D8 day -4 ctrl screen 1.0-tech. Rep1 related to Figure 2 and S3
D8neg_D-4_S1_L003_R1_001.fastq 501mel_KRAB_dCas9_clone D8 day -4 ctrl screen 1.0-tech. Rep1 related to Figure 2 and S3
D8neg_D-4_S1_L004_R1_001.fastq 501mel_KRAB_dCas9_clone D8 day -4 ctrl screen 1.0-tech. Rep1 related to Figure 2 and S3
D8pos_D7_S4_L001_R1_001.fastq 501mel_KRAB_dCas9_clone D8 day 7 sample screen 1.0-tech. Rep1 related to Figure 2 and S3
D8pos_D7_S4_L002_R1_001.fastq 501mel_KRAB_dCas9_clone D8 day 7 sample screen 1.0-tech. Rep1 related to Figure 2 and S3
D8pos_D7_S4_L003_R1_001.fastq 501mel_KRAB_dCas9_clone D8 day 7 sample screen 1.0-tech. Rep1 related to Figure 2 and S3
D8pos_D7_S4_L004_R1_001.fastq 501mel_KRAB_dCas9_clone D8 day 7 sample screen 1.0-tech. Rep1 related to Figure 2 and S3
D8pos_D14_S6_L001_R1_001.fastq 501mel_KRAB_dCas9_clone D8 day 14 sample screen 1.0-tech. Rep1 related to Figure 2 and S3
D8pos_D14_S6_L002_R1_001.fastq 501mel_KRAB_dCas9_clone D8 day 14 sample screen 1.0-tech. Rep1 related to Figure 2 and S3
D8pos_D14_S6_L003_R1_001.fastq 501mel_KRAB_dCas9_clone D8 day 14 sample screen 1.0-tech. Rep1 related to Figure 2 and S3
D8pos_D14_S6_L004_R1_001.fastq 501mel_KRAB_dCas9_clone D8 day 14 sample screen 1.0-tech. Rep1 related to Figure 2 and S3
D12neg_D-4_S2_L001_R1_001.fastq 501mel_KRAB_dCas9_clone D12 day -4 ctrl screen 1.0-tech. Rep1 related to Figure 2 and S3
D12neg_D-4_S2_L002_R1_001.fastq 501mel_KRAB_dCas9_clone D12 day -4 ctrl screen 1.0-tech. Rep1 related to Figure 2 and S3
D12neg_D-4_S2_L003_R1_001.fastq 501mel_KRAB_dCas9_clone D12 day -4 ctrl screen 1.0-tech. Rep1 related to Figure 2 and S3
D12neg_D-4_S2_L004_R1_001.fastq 501mel_KRAB_dCas9_clone D12 day 0 ctrl screen 1.0-tech. Rep1 related to Figure 2 and S3
D12pos_D0_S3_L001_R1_001.fastq 501mel_KRAB_dCas9_clone D12 day 0 ctrl screen 1.0-tech. Rep1 related to Figure 2 and S3
D12pos_D0_S3_L002_R1_001.fastq 501mel_KRAB_dCas9_clone D12 day 0 ctrl screen 1.0-tech. Rep1 related to Figure 2 and S3
D12pos_D0_S3_L003_R1_001.fastq 501mel_KRAB_dCas9_clone D12 day 0 ctrl screen 1.0-tech. Rep1 related to Figure 2 and S3
D12pos_D0_S3_L004_R1_001.fastq 501mel_KRAB_dCas9_clone D12 day 0 ctrl screen 1.0-tech. Rep1 related to Figure 2 and S3
D8pos_D21_S1_L001_R1_001.fastq 501mel_KRAB_dCas9_clone D8 day 21 sample screen 1.0-tech. Rep1 related to Figure 2 and S3
D8pos_D21_S1_L002_R1_001.fastq 501mel_KRAB_dCas9_clone D8 day 21 sample screen 1.0-tech. Rep1 related to Figure 2 and S3
D8pos_D21_S1_L003_R1_001.fastq 501mel_KRAB_dCas9_clone D8 day 21 sample screen 1.0-tech. Rep1 related to Figure 2 and S3
D8pos_D21_S1_L004_R1_001.fastq 501mel_KRAB_dCas9_clone D8 day 21 sample screen 1.0-tech. Rep1 related to Figure 2 and S3
D12pos_D21_S2_L001_R1_001.fastq 501mel_KRAB_dCas9_clone D12 day 21 sample screen 1.0-tech. Rep1 related to Figure 2 and S3
D12pos_D21_S2_L002_R1_001.fastq 501mel_KRAB_dCas9_clone D12 day 21 sample screen 1.0-tech. Rep1 related to Figure 2 and S3
D12pos_D21_S2_L003_R1_001.fastq 501mel_KRAB_dCas9_clone D12 day 21 sample screen 1.0-tech. Rep1 related to Figure 2 and S3
D12pos_D21_S2_L004_R1_001.fastq 501mel_KRAB_dCas9_clone D12 day 21 sample screen 1.0-tech. Rep1 related to Figure 2 and S3
D8plus_D-4_S1_L001_R1_001.fastq.gz/D8plus_D-4_S1_L001_R2_001.fastq.gz 501mel_KRAB_dCas9_clone D8 day -4 ctrl screen 1.0-tech. Rep1, Reseq related to Figure 2 and S3
plasmid_KRAB_library_S2_L001_R1_001.fastq.gz/plasmid_KRAB_library_S2_L001_R2_001.fastq.gz plasmid libary screen 1.0-tech. Rep1 related to Figure 2 and S3
D8Minus_D21_S1_L001_R1_001.fastq.gz/D8Minus_D21_S1_L001_R2_001.fastq.gz 501mel_KRAB_dCas9_clones D8 day 21 neg ctrl no dox screen 1.0-tech. Rep1 related to Figure 2 and S3
D12Minus_D21_S2_L001_R1_001.fastq.gz/D12Minus_D21_S2_L001_R2_001.fastq.gz 501mel_KRAB_dCas9_clone D1 day 21 neg ctrl no dox screen 1.0-tech. Rep1 related to Figure 2 and S3