cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/vgj8b92vyw.1
title: In Silico Study of α-γ Phase Transformation in RDX: Raw Data

description: Raw data from the LAMMPS simulator for the MD study of α-γ Phase Transformation in RDX. The "log.*.data" contains the crystallographic parameters and energy terms of SB potential at various simulation times. Each data file indicates the temperature at which the data is collected. The "thermo_style" command from LAMMPS indicating the format of the data is given below. thermo_style custom step xlo xhi ylo yhi zlo zhi xy yz xz cella cellb cellc vol pxx pyy pzz pxy pyz pxz press temp pe ke f_1 evdwl ecoul ebond eangle edihed eimp elong etail Refer to https://lammps.sandia.gov/doc/thermo_style.html for more details on description of each keyword. Details of "f_1" can be found at https://lammps.sandia.gov/doc/fix_nh.html. The "atom_positions" folder contains 7 subfolders for each temperature from 300 K to 450 K (increments of 25 K) for which the MD simulations were performed. The "atm_pos*.lst" files in these subfolders contains the atomic positions for all molecules at that temperature for the timestep indicated in the file name. The atom coordinates are provided only for the 3 Carbon atoms and 6 Nitrogen atoms of an RDX molecule since these are the only atoms used to calculate the wag angles of the molecule. The atom coordinates are given after including the effect of the atom passing through the periodic boundaries. The format of the atomic position data is given below. Atom ID (1-3024), Molecule ID (1-144), Atom Type (1-3), Atom Charge, "X, Y, Z Atom Coordinates".
DOI: 10.17632/zzcjn2f8c6.1
title: Data for: Predicting missing links in directed networks based on local structure: An investment-profit index

description: This dataset contains all necessary data, program files and raw results of our manuscript "Predicting missing links in directed networks based on local structure: An investment-profit index".
DOI: 10.17632/75fs3vm5sg.1
title: Fate of organic carbon burial in modern sediment within Yangtze River Estuary

description: Detailed information for Corg, TN, C/N, SA, CF, and isotopes of δ13Corg and δ15N in surface sediments and sediment cores within Yangtze River Estuary (YRE); Detailed information for physico-chemical properties of bottom water and surface sediment from the river channel to the estuary
DOI: 10.17632/75fs3vm5sg.2
title: Fate of organic carbon burial in modern sediment within Yangtze River Estuary

description: Detailed information for Corg, TN, C/N, SA, CF, and isotopes of δ13Corg and δ15N in surface sediments and sediment cores within Yangtze River Estuary (YRE); Detailed information for physico-chemical properties of bottom water and surface sediment from the river channel to the estuary
DOI: 10.17632/7hj28bmfxz.14
title: Data for: On The Radon--Nikodym Spectral Approach With Optimal Clustering.

description: This is the code to accompany the paper "On The Radon--Nikodym Spectral Approach With Optimal Clustering". This is a software implementing the algorithms of interpolation, classification, and optimal clustering based on the Lebesgue quadrature technique. Whereas in a Bayesian approach new observations change only outcome probabilities, in the Radon-Nikodym approach not only outcome probabilities but also the probability space change with new observations. This is a remarkable feature of the approach: both the probabilities and the probability space are constructed from the data. A regular PCA variation expansion depends on attributes normalizing. The PCA variation expansion in the Lebesgue quadrature basis is unique thus does not depend on attributes scale, moreover it is invariant relatively any non-degenerated linear transform of input vector components.
DOI: 10.17632/b65ycr8tj6.3
title: Statistical tests in R for protic ionic liquid pretreatment optimization

description: In this dataset we described all statistical tests mentioned in the article entitled "In-depth process parameter investigation into a protic ionic liquid pretreatment for 2G ethanol production".
DOI: 10.5523/bris.3erdo698eboli2ptxi324rsuhg
title: Individual-based gonorrhoea transmission model

description: This repository contains the following MATLAB files, which define and simulate an individual-based dynamic transmission model of gonorrhoea infection and treatment in MSM. The model incorporates ciprofloxacin-sensitive and resistant strains, a time-dependent sexual contact network, and allows a flexible choice of complex (individual-based) treatment, testing and tracing options, including strain-sensitive diagnostic tests with variable time delays.
DOI: 10.15151/esrf-es-186919725
title: Structural studies on the coupling of transcription and translation
DOI: 10.17632/4r46w7rfsx.1
title: Table S1. List of the up-regulated proteins found in the secretome of IL-1β primed MSC.

description: In the present study, we found that, IL-1β-primed gingival MSCs (IL-MSCs) promoted cell migration, dermal-epidermal junction formation and inflammation reduction in vitro, as well as improved epidermal substitute engraftment in vivo. IL-MSCs had different secretory profiles from naive gingival MSCs (NV-MSCs), characterized by an overexpression of TGF-β and MMP pathway agonists. Eventually, MMP-1, MMP-9 and TGF-β1 appeared to be critically involved in IL-MSC mechanisms of action.
DOI: 10.17632/f7yvgh4ys7.1
title: Who Accepts Information Measures

description: People with strong internal locus of control tends to demonstrates wrong decisions in the context of identifying informative data.
DOI: 10.17632/f7yvgh4ys7.2
title: Who Accepts Information Measures

description: People with strong internal locus of control tends to demonstrates wrong decisions in the context of identifying informative data.
DOI: 10.17632/rxfzx6nbvw.1
title: Transfer Learning Models for Health-Related Twitter Data

description: These models were created for the Shared Tasks of the Social Media for Health Research and Applications Workshop at ACL 2019. For more detail on the tasks see: https://healthlanguageprocessing.org/smm4h/challenge/ They were all based on first fine-tuning pre-trained language models using transfer learning methods and then training these models to perform the task at hand. For more details on the methodology please see our paper: Dirkson, A.R. & Verberne, S. Transfer Learning for Health-Related Twitter Data. Proceedings of the ACL 2019 SMM4H workshop. Pre-print available at: http://liacs.leidenuniv.nl/~dirksonar/wp-content/uploads/2019/07/SharedTasksSMM4H2019_TMRLeiden_Preprint.pdf
DOI: 10.17632/rxfzx6nbvw.2
title: Transfer Learning Models for Health-Related Twitter Data

description: These models were created for the Shared Tasks of the Social Media for Health Research and Applications Workshop at ACL 2019. For more detail on the tasks see: https://healthlanguageprocessing.org/smm4h/challenge/ They were all based on first fine-tuning pre-trained language models using transfer learning methods and then training these models to perform the task at hand. For more details on the methodology please see our paper: Dirkson, A.R. & Verberne, S. Transfer Learning for Health-Related Twitter Data. Proceedings of the ACL 2019 SMM4H workshop. Pre-print available at: http://liacs.leidenuniv.nl/~dirksonar/wp-content/uploads/2019/07/SharedTasksSMM4H2019_TMRLeiden_Preprint.pdf
DOI: 10.5281/zenodo.3337400
title: Fine Three-Dimensional VHF Lightning Mapping Using Waveform Cross-Correlation TOA Method

description: In a manuscript entitled “Fine Three-Dimensional VHF Lightning Mapping Using Waveform Cross-Correlation TOA Method”, the lightning data obtained by an improved VHF 3-D location system were analyzed. The data of our results are including in the paper_Fig_x.figs. These files can be opened by MATLAB. The data supports the aforementioned manuscript and can be used freely for scientific purposes with appropriate citation.
DOI: 10.17632/f632vtwy9z.1
title: Data for: Decomposition rate of extraradical hyphae of arbuscular mycorrhizal fungi decreases rapidly over time and varies by hyphal diameter and season

description: The dataset contains hyphal length densities (HLDs) of field-grown litter of extraradical hyphae of arbuscular mycorrhizal fungi remaining after in-growth bag incubation periods of 0.5–8 months in a warm-temperate Chamaecyparis obtusa forest in Central Japan. The dataset is provided with the article “Decomposition rate of extraradical hyphae of arbuscular mycorrhizal fungi decreases rapidly over time and varies by hyphal diameter and season” by Holger Schäfer, Masako Dannoura, Mioko Ataka, and Akira Osawa.
DOI: 10.5061/dryad.k74670v/1
title: Tracked data files, females glued on magnets

description: Data from males flies paired with virgin females glued on magnets. *.m files, with the following data structs: fly (position and orientation of fly during the trial), robot (position and orientation of robot), chases and chases2 (starts and ends of chases, each uses slightly different criteria to define a chase. data from chases struct used in paper), magloc_on_flyazi (matrix with the location of the magnet on the fly's azimuth at each time step). Data come from 10 minute trials.
DOI: 10.6080/k00c4t06
title: Simultaneous extracellular recordings of avian auditory neurons in zebra finches presented with all the repertoire of vocalizations used by this species for vocal communication
title: CRCNS.org aa-4

description: This data set contains extra-cellular electrophysiological recordings from 6 urethane anesthetized adult zebra finches (Taeniopygia guttata), 4 males and 2 females. At each electrophysiological recording site a set of sounds was presented to the subject. This set was made from 10 ripple noise stimuli of 2 sec., and 20 songs of zebra finches and the vocalizations from the repertoire of 10 individuals. The maximum number of stimuli that could be selected in that procedure was 171. The average number of stimuli played for each single unit was 144. Ten trials were acquired for each stimulus with a few exceptions. Sounds were broadcasted in a random order. Neural responses were recorded using the signal of two (5 subjects) or one (1 subject) electrode arrays. When two electrode arrays were used, they were placed each in one hemisphere, targeting the following avian auditory cortical regions: Field L (including the thalamo recipient L2, the primary auditory regions L1 and L3), caudolateral and caudomedial mesopallium (CLM and CMM) and caudomedial nidopallium (NCM). Data contains spike times for 914 single auditory units from the 1401 auditory spike-sorted units of all our recordings. Additional details on these experiments can be found in: Elie JE and Theunissen FE. Meaning in the avian auditory cortex: Neural representation of communication calls. European Journal of Neuroscience. 2015. 41(5) 546-567. Elie JE and Theunissen FE. Invariant neural responses for sensory categories revealed by the time-varying information for communication calls. Plos Computational Biology. 2019.
DOI: 10.17037/data.00001159
title: Clinical Code List - Fractures - ICD-10

description: ICD-10 codes for all fractures
DOI: 10.17037/data.00001161
title: Clinical Code List - Pelvic Fractures - ICD-10

description: ICD-10 codes for pelvis fractures
DOI: 10.17037/data.00001172
title: Clinical Code List - Proximal Humerus Fractures - Read Codes

description: Read codes for proximal humerus fractures
DOI: 10.17037/data.00001176
title: Clinical Code List - Asthma - Read Codes

description: Read codes for asthma
DOI: 10.17037/data.00001182
title: Clinical Code List - Harmful Alcohol Use - Read Codes

description: Read codes for harmful alcohol use
DOI: 10.17037/data.00001183
title: Clinical Code List - Phototherapy - OPCS

description: OPCS procedure codes for phototherapy
DOI: 10.5061/dryad.0t39970/1
title: Dryad Item 10.5061/DRYAD.0T39970/1

description: (:tba)
DOI: 10.5061/dryad.0t39970/2
title: Dryad Item 10.5061/DRYAD.0T39970/2

description: (:tba)
DOI: 10.5061/dryad.0t39970/3
title: Dryad Item 10.5061/DRYAD.0T39970/3

description: (:tba)
DOI: 10.5281/zenodo.3337889
title: A calibrated database of kinematics and EMG of the forearm and hand during activities of daily living

description: KIN-MUS UJI Dataset contains 572 recordings with anatomical angles and forearm muscle activity of 22 subjects while performing 26 representative activities of daily living. This dataset is, to our knowledge, the biggest currently available hand kinematics and muscle activity dataset to focus on goal-oriented actions. Data were recorded using a CyberGlove instrumented glove and surface EMG electrodes, both properly synchronised. Eighteen hand anatomical angles were obtained from the glove sensors by a validated calibration procedure. Surface EMG activity was recorded from seven representative forearm areas. The statistics verified that data were not affected by the experimental procedures and were similar to the data acquired under real-life conditions. <strong>Data Sets</strong>: Data are presented as a Matlab data structure (<em>.mat</em> file). This structure contains all the recorded kinematic and muscle activity data classified as: ADL, phase (reaching, manipulation or release) and subject. The fields contained in the structure are those detailed in the following scheme: Subject: subject ID; ADL: ADL ID; Phase: phase of movement. 1 corresponds to reaching; 2 corresponds to manipulation; 3 corresponds to releasing. Time: Time stamp Angles (18 columns): Calibrated anatomical angles Muscle activity (7 columns): Normalised signal for the seven representative spot areas, according to [1]. RAW_EMG struct provides the raw sEMG data, without any filter and not resampled, so that researchers may choose to condition the signals as they please<strong>.</strong> The fields contained in this structure are those detailed in the following scheme: Subject: subject ID; ADL: ADL ID, according to Table 1; Time: Time stamp; this field corresponds with the time stamp of the previous structure. Raw EMG data (7 columns): Raw sEMG data without any filter and not resampled, for the seven representative spot areas according to [1]. [1] Jarque-Bou, N. J., Vergara, M., Sancho-Bru, J. L., Alba, R.-S. & Gracia-Ibáñez, V. Identification of forearm skin zones with similar muscle activation patterns during activities of daily living. <em>J. NeuroEngineering Rehabil. </em>(2018).
DOI: 10.5281/zenodo.3337890
title: A calibrated database of kinematics and EMG of the forearm and hand during activities of daily living

description: KIN-MUS UJI Dataset contains 572 recordings with anatomical angles and forearm muscle activity of 22 subjects while performing 26 representative activities of daily living. This dataset is, to our knowledge, the biggest currently available hand kinematics and muscle activity dataset to focus on goal-oriented actions. Data were recorded using a CyberGlove instrumented glove and surface EMG electrodes, both properly synchronised. Eighteen hand anatomical angles were obtained from the glove sensors by a validated calibration procedure. Surface EMG activity was recorded from seven representative forearm areas. The statistics verified that data were not affected by the experimental procedures and were similar to the data acquired under real-life conditions. <strong>Data Sets</strong>: Data are presented as a single Matlab data structure (<em>.mat</em> file). This structure contains all the recorded kinematic and muscle activity data classified as: ADL, phase (reaching, manipulation or release) and subject. The fields contained in the structure are those detailed in the following scheme: Subject: subject ID; ADL: ADL ID; Phase: phase of movement. 1 corresponds to reaching; 2 corresponds to manipulation; 3 corresponds to releasing. Time: Time stamp Angles (18 columns): Calibrated anatomical angles Muscle activity (7 columns): Normalised signal for the seven representative spot areas, according to [1]. [1] Jarque-Bou, N. J., Vergara, M., Sancho-Bru, J. L., Alba, R.-S. & Gracia-Ibáñez, V. Identification of forearm skin zones with similar muscle activation patterns during activities of daily living. <em>J. NeuroEngineering Rehabil. </em>(2018).
DOI: 10.17037/data.00001163
title: Clinical Code List - Wrist Fractures - ICD-10

description: ICD-10 codes for wrist fractures
DOI: 10.17037/data.00001174
title: Clinical Code List - Diabetes - ICD-10

description: ICD-10 codes for diabetes
DOI: 10.17037/data.00001179
title: Clinical Code List - Eczema Therapy - Read Codes

description: Read codes for eczema therapies
DOI: 10.17037/data.00001184
title: Clinical Code List - Asthma - ICD-10

description: ICD-10 codes for asthma
DOI: 10.5061/dryad.0t39970/4
title: Dryad Item 10.5061/DRYAD.0T39970/4

description: (:tba)
DOI: 10.5281/zenodo.3337367
title: DWD European Weather 2

description: opendata.dwd.de - OpenData by Deutscher Wetter Dienst Conditions: https://www.dwd.de/EN/service/copyright/copyright_node.html dates and times are UTC.
DOI: 10.5281/zenodo.3337623
title: Arab-Andalusian music lyrics dataset

description: The dataset contains lyrics for the songs in the Arab-Anadalusian music collection curated within the CompMusic project, that belong to the nawbas "Isbahan", "Maya”, “Raml Maya”, “Gharibat al-Husayn”, “Hijaz Kabir”, “Hijaz Msharqi”, “Istihlal”, “Rasd”, and ”Rasd Dayl”. Lyrics are stored in two formats: as Tab Separated Values (TSV) files and as JSON files. Each file is identified by its MusicBrainz recording ID (MBID). The lyrics are stored both in their original Arabic script (folder 'original') and a romanized/transliterated version (folder 'transliterated') using the American Library of Congress (ALA-LC standard). Corresponding audio files are available from the Arab-Andalusian music corpus, as well as the Internet Archive URL included in the metadata file ('metadata.csv'). For more information about the exact format and contents of the dataset, please consult the README provided in the archive. For more information, please refer to http://compmusic.upf.edu/corpora.
description: New version prepared by Alia Morsi.
DOI: 10.5281/zenodo.2556354
title: Myotonic dystrophy research: imaging result files ( DTI, VBM) from a 5-year longitudinal follow-up study

description: This ZIP-file contains supplementary data belonging to the manuscript <strong>"Tracking the brain in myotonic dystrophy: a 5-year longitudinal follow-up study", published in PLOS ONE.</strong> In this manuscript we aimed to examine the natural history of brain involvement in adult-onset myotonic dystrophies type 1 and 2 (DM1, DM2). We conducted a longitudinal observational study to examine functional and structural cerebral changes in myotonic dystrophies. We enrolled 16 adult-onset DM1 patients, 16 DM2 patients, and 17 controls. At baseline (T1) and at follow-up (T2) participants underwent neurological, neuropsychological, and 3T-brain MRI examinations using identical study protocols that included voxel-based morphometry and diffusion tensor imaging. The ZIP-file contains imaging result files from the different statistical analyses.
DOI: 10.5281/zenodo.3337350
title: Binary black-hole simulation SXS:BBH:0430

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.3337621
title: FADN data on the support under the CAP delimited for LAU2 (NUTS2) regions in the EU Member States for the 2007-2013 programming period

description: Ready to use FADN dataset on the support under the CAP in 2007-2013 delimited for LAU2 (NUTS2) regions in the EU Member States. Investigation of the interaction between Cohesion and Rural Policies requires analysing comparable data. However, the CAP data are usually collected at the national level. The FADN database is the only data source for analysing the impact of agricultural policy instruments on the economic situation of farms. However, the regional breakdown of FADN data in some countries does not correspond to the NUTS2 breakdown for which cohesion policy is defined. The provided FADN data delimitation uses a methodology that takes into account the range of impact and features specific to a given region. Because the research shows a very strong relationship between the amount of support under the CAP and the number and size of farms on a given area, this criterion was used to delimit FADN data for particular LAU2 (NUTS2) regions, while maintaining the allocation to individual measures. FADN data aggregated (averaged) to the level of FADN regions and economic size classes were used. Each FADN region has been assigned a corresponding NUTS2 region (or regions) according to the classification in 2010 in which the full census of the farm structure survey was carried out. The delimitation of FADN data to NUTS2 regions was based on weights constructed on the basis of Eurostat data on utilised agricultural area and number of holdings in 2010. In each economic size class, each FADN region consisted of the sum of the NUTS2 regions weighted by the utilised agricultural area. The result of each FADN variable was the sum of its values in each economic size class, weighted by the total number of holdings in each class. This database has served as a basis for two articles, one validating the assumptions of the NUTS2 (LAU) delimitation of the FADN regions and the other using the database to compare synergies and trade-offs between cohesion policy and the common agricultural policy.
DOI: 10.5281/zenodo.3337622
title: FADN data on the support under the CAP delimited for LAU2 (NUTS2) regions in the EU Member States for the 2007-2013 programming period

description: Ready to use FADN dataset on the support under the CAP in 2007-2013 delimited for LAU2 (NUTS2) regions in the EU Member States. Investigation of the interaction between Cohesion and Rural Policies requires analysing comparable data. However, the CAP data are usually collected at the national level. The FADN database is the only data source for analysing the impact of agricultural policy instruments on the economic situation of farms. However, the regional breakdown of FADN data in some countries does not correspond to the NUTS2 breakdown for which cohesion policy is defined. The provided FADN data delimitation uses a methodology that takes into account the range of impact and features specific to a given region. Because the research shows a very strong relationship between the amount of support under the CAP and the number and size of farms on a given area, this criterion was used to delimit FADN data for particular LAU2 (NUTS2) regions, while maintaining the allocation to individual measures. FADN data aggregated (averaged) to the level of FADN regions and economic size classes were used. Each FADN region has been assigned a corresponding NUTS2 region (or regions) according to the classification in 2010 in which the full census of the farm structure survey was carried out. The delimitation of FADN data to NUTS2 regions was based on weights constructed on the basis of Eurostat data on utilised agricultural area and number of holdings in 2010. In each economic size class, each FADN region consisted of the sum of the NUTS2 regions weighted by the utilised agricultural area. The result of each FADN variable was the sum of its values in each economic size class, weighted by the total number of holdings in each class. This database has served as a basis for two articles, one validating the assumptions of the NUTS2 (LAU) delimitation of the FADN regions and the other using the database to compare synergies and trade-offs between cohesion policy and the common agricultural policy.
DOI: 10.17632/6tczgfy66n.1
title: Data for: How Often Do Dictators Have Positive Economic Effects? Global Evidence, 1858-2010

description: Replication datasets and code for "How Often Do Dictators Have Positive Economic Effects? Global Evidence, 1858-2010"
DOI: 10.21227/900s-f773
title: Generation and load data for IEEE 123-node case and Nanji case

description: These two data sets are the generation and load profiles for a modified IEEE 123-node case and Nanji case.
DOI: 10.21227/w2t5-pd31
title: Generation and load data for IEEE 123-node case and Nanji case

description: These two data sets are the generation and load profiles for a modified IEEE 123-node case and Nanji case.