cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15814467
title: Extracting Reproducible Components from Electroencephalographic Responses to Transcranial Magnetic Stimulation with Group Task-Related Component Analysis

description: Dataset used in the study Couto et al., "Extracting Reproducible Components from Electroencephalographic Responses to Transcranial Magnetic Stimulation with Group Task-Related Component Analysis", Imaging Neuroscience (2025), https://doi.org/10.1162/IMAG.a.1085

The files Dataset_Milan.zip and Dataset_Aalborg.zip contain the anonymized, preprocessed TMS-evoked potentials for each individual from the Milan and Aalborg datasets, respectively.

The data are stored in the .fif format used by MNE-Python (epochs structure).

Please refer to the script callgtrca.py  (available at: https://github.com/Boutoo/gTRCA) for instructions on how to load the files, fit the GTRCA model, and visualize the extracted components.

Please cite the corresponding article when using or referencing this dataset:



Couto et al., "Extracting Reproducible Components from Electroencephalographic Responses to Transcranial Magnetic Stimulation with Group Task-Related Component Analysis", Imaging Neuroscience, 4 (2025): https://doi.org/10.1162/IMAG.a.1085
DOI: 10.5281/zenodo.15814468
title: Extracting Reproducible Components from Electroencephalographic Responses to Transcranial Magnetic Stimulation with Group Task-Related Component Analysis

description: Dataset used in the study Couto et al., "Extracting Reproducible Components from Electroencephalographic Responses to Transcranial Magnetic Stimulation with Group Task-Related Component Analysis", Imaging Neuroscience (2025), https://doi.org/10.1162/IMAG.a.1085

The files Dataset_Milan.zip and Dataset_Aalborg.zip contain the anonymized, preprocessed TMS-evoked potentials for each individual from the Milan and Aalborg datasets, respectively.

The data are stored in the .fif format used by MNE-Python (epochs structure).

Please refer to the script callgtrca.py  (available at: https://github.com/Boutoo/gTRCA) for instructions on how to load the files, fit the GTRCA model, and visualize the extracted components.

Please cite the corresponding article when using or referencing this dataset:



Couto et al., "Extracting Reproducible Components from Electroencephalographic Responses to Transcranial Magnetic Stimulation with Group Task-Related Component Analysis", Imaging Neuroscience, 4 (2025): https://doi.org/10.1162/IMAG.a.1085
DOI: 10.7910/dvn/odbhzy
title: Temporal properties of direct current sensory block of the rat sciatic nerve using the C-fiber reflex

description: Direct current (DC) electrical block of peripheral sensory axons has potential for clinical applications in pain management. The C-fiber reflex (CFR), elicited via noxious stimulation of the foot, is suitable for investigating the activation of unmyelinated C-fiber nerves, the fiber class that is responsible for lingering pain sensations. 
In anesthetized rats, the CFR was elicited via electrical stimulation to the plantar surface of the hindpaw, and the resulting C-fiber-evoked electromyograms (EMG) were recorded from the ipsilateral biceps femoris muscle. A Carbon Separated Interface Nerve Electrode (C-SINE), was used to deliver DC block to arrest action potentials in the sciatic nerve. The efficacy of the block was observed as a reduction/abolition of the magnitude of the EMG in a time window corresponding to the latency of C-fibers activity.
Complete cessation of nerve activity could be achieved instantaneously by applying DC at the “block threshold”. At amplitudes below the block threshold, complete block could be induced over a period of seconds to minutes, with lower currents being correlated with longer induction times. When block was applied for prolonged periods of time, block was sustained following the cessation of DC delivery. This “recovery period” was longer for longer durations of block application. 
The CFR is an established method to investigate pharmaceutical pain therapies, yet to date, has not been used to assess electrical block of sensory axons. Therefore, anatomical and electrophysiological methods were used to validate this method. DC nerve block shows promise for clinical pain management applications. Furthermore, the temporal properties described here could be used to reduce overall electrical current delivery and improve safety.
DOI: 10.15468/matxhn
title: Molecular evidence supports the recognition of two distinct species within Anthidium minimum Pasteels, 1969, from the Afro-Arabian zoogeographic region (Hymenoptera: Megachilidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kasparek, Max, Shebl, Mohamed A. (2025): Molecular evidence supports the recognition of two distinct species within Anthidium minimum Pasteels, 1969, from the Afro-Arabian zoogeographic region (Hymenoptera: Megachilidae). Zootaxa 5725 (2): 267-278, DOI: 10.11646/zootaxa.5725.2.5, URL: https://doi.org/10.11646/zootaxa.5725.2.5AbstractThe Afro-Arabian zoogeographic region, dominated by extensive drylands, harbours a comparatively poor fauna of wild bees, but with many taxa still undescribed or of uncertain taxonomic status. Anthidium minimum Pasteels, 1969, the priority name for the species most frequently referred to in the literature as Anthidium amabile Alfken, 1932 nec Cockerell, 1904, has been reported as widely distributed in the region. Mitochondrial DNA barcoding (COI gene) revealed that specimens assigned to A. minimum actually represent two clearly distinct species: Anthidium minimum, occurring from Oman through Egypt to Algeria, and Anthidium amandum Kasparek sp. nov., occurring from Oman through Yemen and Saudi Arabia to Sudan. The ranges of the two species overlap at the eastern tip of the Arabian Peninsula. While certain colour traits reliably separate them, the presence of colour morphs in both species creates a complex pattern that likely explains why their distinctiveness has so far remained unrecognised.
DOI: 10.5883/bold:aau8973
title: Barcode Index Number BOLD:AAU8973

description: A cluster of barcode records associated with a Barcode Index Number(BIN). Each cluster is a proxy for a named or unnamed species. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8983
title: Overview of Barcode Index Number - BOLD:AAU8983

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8987
title: Overview of Barcode Index Number - BOLD:AAU8987

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8988
title: Overview of Barcode Index Number - BOLD:AAU8988

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8990
title: Overview of Barcode Index Number - BOLD:AAU8990

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8991
title: Overview of Barcode Index Number - BOLD:AAU8991

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8992
title: Overview of Barcode Index Number - BOLD:AAU8992

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8993
title: Overview of Barcode Index Number - BOLD:AAU8993

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8996
title: Overview of Barcode Index Number - BOLD:AAU8996

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8998
title: Overview of Barcode Index Number - BOLD:AAU8998

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau8999
title: Overview of Barcode Index Number - BOLD:AAU8999

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9000
title: Overview of Barcode Index Number - BOLD:AAU9000

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9001
title: Overview of Barcode Index Number - BOLD:AAU9001

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9002
title: Overview of Barcode Index Number - BOLD:AAU9002

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9004
title: Overview of Barcode Index Number - BOLD:AAU9004

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9005
title: Overview of Barcode Index Number - BOLD:AAU9005

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9013
title: Overview of Barcode Index Number - BOLD:AAU9013

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9021
title: Overview of Barcode Index Number - BOLD:AAU9021

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.15468/dl.dwbetv
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eremospatha quinquecostulata Becc."
 ]
}

 The dataset includes 28 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008773-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5883/bold:aau9025
title: Overview of Barcode Index Number - BOLD:AAU9025

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9026
title: Overview of Barcode Index Number - BOLD:AAU9026

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.15468/dl.hmmpjy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Orobanche consimilis Schiman-Czeika, Orobanche consimilis Schiman-Czeika, Orobanche consimilis Schiman-Czeika, Orobanche consimilis Schiman-Czeika, Orobanche consimilis Schiman-Czeika, Orobanche consimilis Schiman-Czeika, 1964, 161154488, Orobanche consimilis Schiman-Czeika, 1964)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008774-241024112534372/datasets/export for details.
DOI: 10.5883/bold:aau9031
title: Overview of Barcode Index Number - BOLD:AAU9031

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9032
title: Overview of Barcode Index Number - BOLD:AAU9032

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9041
title: Overview of Barcode Index Number - BOLD:AAU9041

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9042
title: Overview of Barcode Index Number - BOLD:AAU9042

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9047
title: Overview of Barcode Index Number - BOLD:AAU9047

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9048
title: Overview of Barcode Index Number - BOLD:AAU9048

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9049
title: Overview of Barcode Index Number - BOLD:AAU9049

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9050
title: Overview of Barcode Index Number - BOLD:AAU9050

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9056
title: Overview of Barcode Index Number - BOLD:AAU9056

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9057
title: Overview of Barcode Index Number - BOLD:AAU9057

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9060
title: Overview of Barcode Index Number - BOLD:AAU9060

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9066
title: Overview of Barcode Index Number - BOLD:AAU9066

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9067
title: Overview of Barcode Index Number - BOLD:AAU9067

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9072
title: Overview of Barcode Index Number - BOLD:AAU9072

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9073
title: Overview of Barcode Index Number - BOLD:AAU9073

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.6084/m9.figshare.26937931
title: Supporting Data- Methods for detecting and monitoring Salmonella infection and chronic carriage in living mice using bioluminescent in vivo imaging

description: <em>Salmonella enterica serovar </em>Typhi primarily persists in chronic carriers by forming biofilms on gallstones in the gallbladder. We have developed a gallstone mouse model to study chronic carriage. To better understand the infection timeline and differentiate between mice that have maintained long-term gallbladder carriage from those that have cleared infection, we utilized bioluminescent <em>S. </em>Typhimurium and <em>in vivo </em>imaging to detect and track the organ-specific presence of bacteria in living mice. All mice used in this study were housed and maintained in the animal facilities at the Abigail Wexner Research Institute at Nationwide Children’s Hospital under an approved Institutional Animal Care and Use Committee (IACUC) protocol. 
<em>S. </em>Typhimurium 14028 (WT) was transduced with the <em>lux</em> operon from the <em>S. </em>Typhimurium Xen33 strain from Perkin Elmer©, creating 14028lux. 129X1/SvJ mice were fed a lithogenic diet for 6 weeks to induce gallstone formation. After cessation of diet, these mice were infected with 5x103-1x104 colony forming units (CFU) of either the 14028lux isolate, WT (non-luminescent) isolate, or an equal volume of sterile phosphate buffered saline (PBS) via an intraperitoneal injection. Mice were serially imaged (IVIS SpectrumCT) every 2-3 days for up to 63 days. Images were quantified by measuring average radiance over selected regions of interest. The presence of bioluminescent bacteria in the gallbladder, liver, spleen, and cecum were confirmed by imaging the abdominal cavity and individual organs. Organs were homogenized and CFUs per mg of tissue were quantified and compared between each group.
DOI: 10.5883/bold:aau9074
title: Overview of Barcode Index Number - BOLD:AAU9074

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.6084/m9.figshare.26937931.v3
title: Supporting Data- Methods for detecting and monitoring Salmonella infection and chronic carriage in living mice using bioluminescent in vivo imaging

description: <em>Salmonella enterica serovar </em>Typhi primarily persists in chronic carriers by forming biofilms on gallstones in the gallbladder. We have developed a gallstone mouse model to study chronic carriage. To better understand the infection timeline and differentiate between mice that have maintained long-term gallbladder carriage from those that have cleared infection, we utilized bioluminescent <em>S. </em>Typhimurium and <em>in vivo </em>imaging to detect and track the organ-specific presence of bacteria in living mice. All mice used in this study were housed and maintained in the animal facilities at the Abigail Wexner Research Institute at Nationwide Children’s Hospital under an approved Institutional Animal Care and Use Committee (IACUC) protocol. 
<em>S. </em>Typhimurium 14028 (WT) was transduced with the <em>lux</em> operon from the <em>S. </em>Typhimurium Xen33 strain from Perkin Elmer©, creating 14028lux. 129X1/SvJ mice were fed a lithogenic diet for 6 weeks to induce gallstone formation. After cessation of diet, these mice were infected with 5x103-1x104 colony forming units (CFU) of either the 14028lux isolate, WT (non-luminescent) isolate, or an equal volume of sterile phosphate buffered saline (PBS) via an intraperitoneal injection. Mice were serially imaged (IVIS SpectrumCT) every 2-3 days for up to 63 days. Images were quantified by measuring average radiance over selected regions of interest. The presence of bioluminescent bacteria in the gallbladder, liver, spleen, and cecum were confirmed by imaging the abdominal cavity and individual organs. Organs were homogenized and CFUs per mg of tissue were quantified and compared between each group.
DOI: 10.5883/bold:aau9076
title: Overview of Barcode Index Number - BOLD:AAU9076

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.6084/m9.figshare.26937931.v2
title: Supporting Data- Methods for detecting and monitoring Salmonella infection and chronic carriage in living mice using bioluminescent in vivo imaging

description: <em>Salmonella enterica serovar </em>Typhi primarily persists in chronic carriers by forming biofilms on gallstones in the gallbladder. We have developed a gallstone mouse model to study chronic carriage. To better understand the infection timeline and differentiate between mice that have maintained long-term gallbladder carriage from those that have cleared infection, we utilized bioluminescent <em>S. </em>Typhimurium and <em>in vivo </em>imaging to detect and track the organ-specific presence of bacteria in living mice. All mice used in this study were housed and maintained in the animal facilities at the Abigail Wexner Research Institute at Nationwide Children’s Hospital under an approved Institutional Animal Care and Use Committee (IACUC) protocol. 
<em>S. </em>Typhimurium 14028 (WT) was transduced with the <em>lux</em> operon from the <em>S. </em>Typhimurium Xen33 strain from Perkin Elmer©, creating 14028lux. 129X1/SvJ mice were fed a lithogenic diet for 6 weeks to induce gallstone formation. After cessation of diet, these mice were infected with 5x103-1x104 colony forming units (CFU) of either the 14028lux isolate, WT (non-luminescent) isolate, or an equal volume of sterile phosphate buffered saline (PBS) via an intraperitoneal injection. Mice were serially imaged (IVIS SpectrumCT) every 2-3 days for up to 63 days. Images were quantified by measuring average radiance over selected regions of interest. The presence of bioluminescent bacteria in the gallbladder, liver, spleen, and cecum were confirmed by imaging the abdominal cavity and individual organs. Organs were homogenized and CFUs per mg of tissue were quantified and compared between each group.
DOI: 10.5883/bold:aau9077
title: Overview of Barcode Index Number - BOLD:AAU9077

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9080
title: Overview of Barcode Index Number - BOLD:AAU9080

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9082
title: Overview of Barcode Index Number - BOLD:AAU9082

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9084
title: Overview of Barcode Index Number - BOLD:AAU9084

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9086
title: Overview of Barcode Index Number - BOLD:AAU9086

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9095
title: Overview of Barcode Index Number - BOLD:AAU9095

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9097
title: Overview of Barcode Index Number - BOLD:AAU9097

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aau9101
title: Overview of Barcode Index Number - BOLD:AAU9101

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.