cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3669919_d11
title: Additional file 3: of The interaction between vaginal microbiota, cervical length, and vaginal progesterone treatment for preterm birth risk

description: Species read count data for cross-sectional cohort.
DOI: 10.6084/m9.figshare.c.3669919_d12.v1
title: Additional file 12: of The interaction between vaginal microbiota, cervical length, and vaginal progesterone treatment for preterm birth risk

description: Community state type classification of samples as a function of gestation at sampling: progesterone versus control groups.
DOI: 10.6084/m9.figshare.c.3669919_d12
title: Additional file 12: of The interaction between vaginal microbiota, cervical length, and vaginal progesterone treatment for preterm birth risk

description: Community state type classification of samples as a function of gestation at sampling: progesterone versus control groups.
DOI: 10.6084/m9.figshare.c.3669925_d14.v1
title: MOESM8 of Identification and characterization of the glucose dual-affinity transport system in Neurospora crassa: pleiotropic roles in nutrient transport, signaling, and carbon catabolite repression

description: Additional file 8: Table S3. Relative enzyme activity per dried cell weight (gram) vs. WT and Studentâ  s t-test of FigureÂ 5C.
DOI: 10.6084/m9.figshare.c.3669940_d9
title: Additional file 2: of Phylogenomic analysis of Copepoda (Arthropoda, Crustacea) reveals unexpected similarities with earlier proposed morphological phylogenies

description: This file contains the copepod amino acid sequences in FASTA format. (TXT 71 kb)
DOI: 10.6084/m9.figshare.c.3669919_d15.v1
title: Additional file 5: of The interaction between vaginal microbiota, cervical length, and vaginal progesterone treatment for preterm birth risk

description: Species read count data for longitudinal cohort (progesterone treatment).
DOI: 10.6084/m9.figshare.c.3669967_d3
title: MOESM5 of Effects of Plasmodium falciparum infection on umbilical artery resistance and intrafetal blood flow distribution: a Doppler ultrasound study from Papua New Guinea

description: Additional file 5. Associations of recent malaria infection with Doppler indices. A total of 533 malaria tests preceded the Doppler scan by no more than 6Â weeks and were thus considered â  recentâ  . In this category, 17 were positive for P. falciparum with either method (13 by qPCR; 11 by LM) and two were positive for P. vivax, by qPCR. Of these, seven infections were sub-microscopic. These data are not shown in the main text as the numbers of recent malaria episodes were too low to confidently perform statistical analyses.
DOI: 10.6084/m9.figshare.c.3669919_d15
title: Additional file 5: of The interaction between vaginal microbiota, cervical length, and vaginal progesterone treatment for preterm birth risk

description: Species read count data for longitudinal cohort (progesterone treatment).
DOI: 10.6084/m9.figshare.c.3669967_d4.v1
title: MOESM4 of Effects of Plasmodium falciparum infection on umbilical artery resistance and intrafetal blood flow distribution: a Doppler ultrasound study from Papua New Guinea

description: Additional file 4. Malaria infection, nutritional factors, smoking, and other potential associations with decreased cerebroplacental Doppler ratio (CPR, &lt;10th centile) during pregnancy in PNG women. Cerebroplacental ratio was not significantly influenced by various nutritional, behavioural and other factors.
DOI: 10.6084/m9.figshare.c.3669967_d4
title: MOESM4 of Effects of Plasmodium falciparum infection on umbilical artery resistance and intrafetal blood flow distribution: a Doppler ultrasound study from Papua New Guinea

description: Additional file 4. Malaria infection, nutritional factors, smoking, and other potential associations with decreased cerebroplacental Doppler ratio (CPR, &lt;10th centile) during pregnancy in PNG women. Cerebroplacental ratio was not significantly influenced by various nutritional, behavioural and other factors.
DOI: 10.6084/m9.figshare.24919629
title: GrassSyn dataset - Soil organic carbon stocks in Brazilian grassy ecosystems

description: The GrassSyn dataset offers comprehensive soil organic carbon (SOC) stock data from diverse Brazilian grassy ecosystems. It includes spatially explicit SOC stocks, physical soil properties, and ancillary information compiled from 182 studies (1996–2021) across 803 sites, covering 35° latitude and 28° longitude. Organized in relational tables, the dataset reports soil carbon stocks and associated parameters at depths up to 100 cm. SOC stocks vary by grassy ecosystem type and sampling depth. Detailed descriptions and summary statistics are available in the following reference:Andrade, B. O., Gamboa, C. H., Ferreira, G. W. D., Wiesmeier, M., Assad, E. D., Cerri, C. E. P., Mello, J. M., Morais, V. A., Overbeck, G. E., Pinto‐Junior, H. V., Scolforo, J. R. S., & Tornquist, C. G. (2024). The GrassSyn dataset: Soil organic carbon stocks in Brazilian grassy ecosystems. Journal of Environmental Quality, 1–13. https://doi.org/10.1002/jeq2.20665
DOI: 10.6084/m9.figshare.c.3669979_d6.v1
title: Additional file 1: of Genomic and transcriptomic comparison between Staphylococcus aureus strains associated with high and low within herd prevalence of intra-mammary infection

description: GTS/ST398 and GTB/ST8 reads cross-mapped against NCTC 8325 genome and selected and used in RNASeq analysis for quantification and differential expression analysis. (XLSX 183Â kb)
DOI: 10.6084/m9.figshare.c.3669979_d6
title: Additional file 1: of Genomic and transcriptomic comparison between Staphylococcus aureus strains associated with high and low within herd prevalence of intra-mammary infection

description: GTS/ST398 and GTB/ST8 reads cross-mapped against NCTC 8325 genome and selected and used in RNASeq analysis for quantification and differential expression analysis. (XLSX 183Â kb)
DOI: 10.6084/m9.figshare.c.3670009_d2.v1
title: Additional file 4: of The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum

description: MakeTERY function to establish constraints and create separate models. This file contains all relevant constraints for the two different cell types. By default, it also generates the optimal solutions subject to literature constraints as described in the FBA and FVA sections of the paper. (M 2 kb)
DOI: 10.6084/m9.figshare.28050014
title: Parkinsonia florida raw GC-MS files

description: Metabolite extraction from Parkinsonia florida seeds
DOI: 10.6084/m9.figshare.28050014.v1
title: Parkinsonia florida raw GC-MS files

description: Metabolite extraction from Parkinsonia florida seeds
DOI: 10.15468/dl.d3b58u
title: Occurrence Download

description: A dataset containing 487 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acantholabrus palloni (Risso, 1810)"
 ]
}

 The dataset includes 487 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038085-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3669979_d10.v1
title: Additional file 5: of Genomic and transcriptomic comparison between Staphylococcus aureus strains associated with high and low within herd prevalence of intra-mammary infection

description: List of shared and unique genes for single reference sequence representing genotype GTB/ST8ra and GTS/ST398ra. The gene annotation (Category, Subcategory, Subsystem, Role) was reported for each entry. (XLS 762Â kb)
DOI: 10.6084/m9.figshare.c.3670009_d4.v1
title: Additional file 2: of The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum

description: List of reactions and metabolites included in the model. This file contains the more readable format of the Genome scale reconstruction with a catalog of reactions in one tab and of metabolites in the other, supplemented by relevant information for both sets. (XLS 442 kb)
DOI: 10.6084/m9.figshare.c.3669979_d10
title: Additional file 5: of Genomic and transcriptomic comparison between Staphylococcus aureus strains associated with high and low within herd prevalence of intra-mammary infection

description: List of shared and unique genes for single reference sequence representing genotype GTB/ST8ra and GTS/ST398ra. The gene annotation (Category, Subcategory, Subsystem, Role) was reported for each entry. (XLS 762Â kb)
DOI: 10.6084/m9.figshare.c.3670009_d4
title: Additional file 2: of The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum

description: List of reactions and metabolites included in the model. This file contains the more readable format of the Genome scale reconstruction with a catalog of reactions in one tab and of metabolites in the other, supplemented by relevant information for both sets. (XLS 442 kb)
DOI: 10.6084/m9.figshare.c.3670009_d5.v1
title: Additional file 5: of The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum

description: Flux reactions for ideal, exponential growth with fixed biomass/growth rate and objective metabolite production. This file contains the entire simulations data used to generate Fig.Â 2 and based on the flux balance analysis described by the study. It includes the entire catalog of reactions, the corresponding flux for both diazotroph and photoautotroph, and the reaction formula. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3670009_d5
title: Additional file 5: of The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum

description: Flux reactions for ideal, exponential growth with fixed biomass/growth rate and objective metabolite production. This file contains the entire simulations data used to generate Fig.Â 2 and based on the flux balance analysis described by the study. It includes the entire catalog of reactions, the corresponding flux for both diazotroph and photoautotroph, and the reaction formula. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3670018_d3.v1
title: Additional file 5: of Factors behind the success story of under-five stunting in Peru: a district ecological multilevel analysis

description: Stunting__Resubmitted_BMCP_December2016 [7, 15–18]. (XLS 637 kb)
DOI: 10.6084/m9.figshare.c.3670018_d3
title: Additional file 5: of Factors behind the success story of under-five stunting in Peru: a district ecological multilevel analysis

description: Stunting__Resubmitted_BMCP_December2016 [7, 15–18]. (XLS 637 kb)
DOI: 10.6084/m9.figshare.c.3670009_d7
title: Additional file 7: of The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum

description: List of lower and upper bounds of flux identified by flux variability analysis. Flux Variability for ideal, exponential growth with fixed biomass/growth rate and objective metabolite production with the same bounds as Flux Balance Analysis. Included are lower and upper bounds for acceptable fluxes along with the total range for each reaction. Reactions are organized by the â  Euclidean Rangeâ  , the square root of the ranges squared, which give an image for the most consistently variable and non-variable reactions between cell types. (XLSX 80 kb)
DOI: 10.6084/m9.figshare.c.3670009_d7.v1
title: Additional file 7: of The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum

description: List of lower and upper bounds of flux identified by flux variability analysis. Flux Variability for ideal, exponential growth with fixed biomass/growth rate and objective metabolite production with the same bounds as Flux Balance Analysis. Included are lower and upper bounds for acceptable fluxes along with the total range for each reaction. Reactions are organized by the â  Euclidean Rangeâ  , the square root of the ranges squared, which give an image for the most consistently variable and non-variable reactions between cell types. (XLSX 80 kb)
DOI: 10.6084/m9.figshare.c.3670009_d8.v1
title: Additional file 6: of The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum

description: List of effects of gene and reaction deletion identified by in silico knockout analysis. This file contains the list of effects from each gene and reaction deletion in separate tabs. Gene/reaction deletions that result in lethality are colored red, those that reduce function are colored yellow, and those that cause no change are white. The single green reaction (deletion of biomass maintenance, EN_ATP) improves gene function. Reactions have associated genes listed alongside and genes have associated reactions listed alongside. There are reports for both diazotrophs and photoautotrophs. Data is reported as ratio (growth rate of knockout divided by “wild type” growth rate), raw knockout growth rate, and change in growth rate calculated using the following equation: Δ μ = μ W T − μ mutant μ W T $$ \varDelta \mu =\frac{\mu_{WT}-{\mu}_{mutant}}{\mu_{WT}} $$ (XLSX 182 kb)
DOI: 10.6084/m9.figshare.c.3670009_d8
title: Additional file 6: of The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum

description: List of effects of gene and reaction deletion identified by in silico knockout analysis. This file contains the list of effects from each gene and reaction deletion in separate tabs. Gene/reaction deletions that result in lethality are colored red, those that reduce function are colored yellow, and those that cause no change are white. The single green reaction (deletion of biomass maintenance, EN_ATP) improves gene function. Reactions have associated genes listed alongside and genes have associated reactions listed alongside. There are reports for both diazotrophs and photoautotrophs. Data is reported as ratio (growth rate of knockout divided by “wild type” growth rate), raw knockout growth rate, and change in growth rate calculated using the following equation: Δ μ = μ W T − μ mutant μ W T $$ \varDelta \mu =\frac{\mu_{WT}-{\mu}_{mutant}}{\mu_{WT}} $$ (XLSX 182 kb)
DOI: 10.6084/m9.figshare.c.3670045_d4.v1
title: Additional file 7: Table S7. of Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape

description: Differentially expressed genes involved in KEGG pathways between paradormancy vs endodormancy. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.c.3670057_d2.v1
title: Additional file 8: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: HMM regions in which methylation levels were higher in PR group relative to CD group. Table also includes identifiers such as gene symbol, Transcript ID, Distance to TSS, percent overlap with region, precise chromosome location of the region, region length, PGS region ID, markers (number of probes), mean enrichment level across the region (fold enrichment), and HMM state (s-HMM: +5, m-HMM: +3, l-HMM: +1.5). (CSV 23 kb)
DOI: 10.6084/m9.figshare.c.3670045_d4
title: Additional file 7: Table S7. of Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape

description: Differentially expressed genes involved in KEGG pathways between paradormancy vs endodormancy. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.c.3670057_d2
title: Additional file 8: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: HMM regions in which methylation levels were higher in PR group relative to CD group. Table also includes identifiers such as gene symbol, Transcript ID, Distance to TSS, percent overlap with region, precise chromosome location of the region, region length, PGS region ID, markers (number of probes), mean enrichment level across the region (fold enrichment), and HMM state (s-HMM: +5, m-HMM: +3, l-HMM: +1.5). (CSV 23 kb)
DOI: 10.6084/m9.figshare.c.3670045_d5.v1
title: Additional file 3: Table S3. of Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape

description: Differentially expressed genes between summer buds vs paradormancy. (XLSX 187Â kb)
DOI: 10.6084/m9.figshare.c.3670045_d5
title: Additional file 3: Table S3. of Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape

description: Differentially expressed genes between summer buds vs paradormancy. (XLSX 187Â kb)
DOI: 10.6084/m9.figshare.c.3670057_d3.v1
title: Additional file 14: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: List of genes that exhibited higher expression level in PR group relative to CD group in adult brain. Table also includes identifiers such as probe name, PrimaryAccession ID, GeneSymbol, Gene ontology (GO), Gene description, chromosome number, P value in Tukeyâ  s multiple comparison test adjusted by FDR, and mean fold change of expression level. (CSV 18 kb)
DOI: 10.6084/m9.figshare.c.3670045_d6.v1
title: Additional file 4: Table S4. of Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape

description: Up and down regulated differentially expressed genes in cluster analysis. (XLSX 326Â kb)
DOI: 10.6084/m9.figshare.c.3670057_d3
title: Additional file 14: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: List of genes that exhibited higher expression level in PR group relative to CD group in adult brain. Table also includes identifiers such as probe name, PrimaryAccession ID, GeneSymbol, Gene ontology (GO), Gene description, chromosome number, P value in Tukeyâ  s multiple comparison test adjusted by FDR, and mean fold change of expression level. (CSV 18 kb)
DOI: 10.6084/m9.figshare.c.3670045_d6
title: Additional file 4: Table S4. of Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape

description: Up and down regulated differentially expressed genes in cluster analysis. (XLSX 326Â kb)
DOI: 10.6084/m9.figshare.c.3670057_d9.v1
title: Additional file 7: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: Supplemental information 1. HMM regions in which methylation levels were lower in PR group relative to CD group. Table also includes identifiers such as gene symbol, Transcript ID, Distance to TSS, percent overlap with region, precise chromosome location of the region, region length, PGS region ID, markers (number of probes), mean enrichment level across the region (fold enrichment), and HMM state (s-HMM: -5, m-HMM: -3, l-HMM: -1.5). (CSV 25 kb)
DOI: 10.6084/m9.figshare.c.3670057_d14.v1
title: Additional file 15: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: List of the genes which exhibited lower expression levels in FA group relative to CD group. Table also includes identifiers such as probe name, PrimaryAccession ID, GeneSymbol, Gene ontology (GO), Gene description, chromosome number, P value in Tukeyâ  s multiple comparison test adjusted by FDR, and mean fold change of expression level. (CSV 21 kb)
DOI: 10.6084/m9.figshare.c.3670114_d3
title: Additional file 4: of Dietary treatment of Crohnâ  s disease: perceptions of families with children treated by exclusive enteral nutrition, a questionnaire survey

description: Raw data analysed during this study. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3670057_d13
title: Additional file 18: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: List of genes that exhibited higher expression level in FA group relative to PR group in adult brain. Table also includes identifiers such as Probe name, PrimaryAccession ID, GeneSymbol, Gene ontology (GO), Gene description, chromosome number, P value in Tukeyâ  s multiple comparison test adjusted by FDR, and mean fold change of expression level. (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3670057_d14
title: Additional file 15: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: List of the genes which exhibited lower expression levels in FA group relative to CD group. Table also includes identifiers such as probe name, PrimaryAccession ID, GeneSymbol, Gene ontology (GO), Gene description, chromosome number, P value in Tukeyâ  s multiple comparison test adjusted by FDR, and mean fold change of expression level. (CSV 21 kb)
DOI: 10.15468/dl.y2c6df
title: Occurrence Download

description: A dataset containing 196226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxalis acetosella L.",
 "Year 1999-2015"
 ]
}

 The dataset includes 196226 records from 776 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038078-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3670057_d17.v1
title: Additional file 11: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: HMM regions in which methylation levels were lower in FA group relative to PR group. Table also includes identifiers such as gene symbol, Transcript ID, Distance to TSS, percent overlap with region, precise chromosome location of the region, region length, PGS region ID, markers (number of probes), mean enrichment level across the region (fold enrichment), and HMM state (s-HMM: -5, m-HMM: -3, l-HMM: -1.5). (CSV 15 kb)
DOI: 10.6084/m9.figshare.28050020
title: Peltophorum africanum raw GC-MS files

description: Metabolite extraction from Peltophorum africanum seeds
DOI: 10.6084/m9.figshare.28050020.v1
title: Peltophorum africanum raw GC-MS files

description: Metabolite extraction from Peltophorum africanum seeds
DOI: 10.6084/m9.figshare.c.3670057_d17
title: Additional file 11: of Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

description: HMM regions in which methylation levels were lower in FA group relative to PR group. Table also includes identifiers such as gene symbol, Transcript ID, Distance to TSS, percent overlap with region, precise chromosome location of the region, region length, PGS region ID, markers (number of probes), mean enrichment level across the region (fold enrichment), and HMM state (s-HMM: -5, m-HMM: -3, l-HMM: -1.5). (CSV 15 kb)
DOI: 10.15468/dl.ytrpek
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Mammalogy Collection - Royal Ontario Museum",
 "OccurrenceStatus is Present",
 "TaxonKey is Erophylla bombifrons (Miller, 1899)"
 ]
}

 The dataset includes 132 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038087-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.