cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-1076530496
title: Shedding light on the microbial dark matter with photons from Synchrotron radiation: structural biology of mesocosms by an explorative pipe

description: The microbial world is constantly shaping the planet by governing the carbon, nitrogen, and sulfur cycles. While recent developments in “omics” opened a window of the complexity of this world, it is still problematic to attribute a function to a gene product or predict enzymatic reactions simply from its sequence. Then, how can enzymes be studied from uncultivated microbes? In this proposal, we are using an explorative approach to open a new field: the structural elucidation of catabolic enzymes from microbial mesocosms. We will study two models, an anaerobic bioreactor containing a methane-degrading consortium, and a microbial community from wastewater treatment. As a proof of concept, we recently isolated, crystallized, and structurally characterized the methane-generating enzyme from an archaeon living in this activated sludge. Now, we will go beyond and isolate more enzymes of catabolic pathways from these "microbial dark matter", playing a key role in thecarbon cycle.
DOI: 10.15151/esrf-es-1120284909
title: scan the spine of sagitta by micro X-ray diffraction

description: scan the spine of sagitta by micro X-ray diffraction
DOI: 10.25345/c5dn4057x
title: MassIVE MSV000091602 - Large scale plasma proteome epitome profiling is an efficient tool for the discovery of cancer biomarkers
title: Cognate protein ID data of 21 mAbs (QPLC21) from the QuantiPlasma library of Biosystems Immunolab Zrt by different LC-MS/MS instruments.
DOI: 10.6084/m9.figshare.22433668
title: Key Factors of Educational CRM Success and Institution Performance: A SEM Analysis

description: Customer relationship management (CRM) success is vital in today’s growing business practice, including in higher education institutions (HEIs). Within this study context, educational customer relationship management (EdCRM) is utilized to manage the interaction between educational institutions and their future and current students. This study aimed at determining the predicting role of institutional capability (IC), student orientation (SO), digital technology (DT), and facilitating condition (FC) to EdCRM success. The study also assessed FC and EdCRM success as factors affecting institution performance (IP). The instrument of the current study was adapted from prior studies and piloted; the pilot data were validated through explanatory factor analysis (EFA). The main data were gathered from 537 respondents. Partial least squares structural equation modeling (PLS-SEM) procedures were used to examine the hypotheses
DOI: 10.6084/m9.figshare.22433668.v1
title: Key Factors of Educational CRM Success and Institution Performance: A SEM Analysis

description: Customer relationship management (CRM) success is vital in today’s growing business practice, including in higher education institutions (HEIs). Within this study context, educational customer relationship management (EdCRM) is utilized to manage the interaction between educational institutions and their future and current students. This study aimed at determining the predicting role of institutional capability (IC), student orientation (SO), digital technology (DT), and facilitating condition (FC) to EdCRM success. The study also assessed FC and EdCRM success as factors affecting institution performance (IP). The instrument of the current study was adapted from prior studies and piloted; the pilot data were validated through explanatory factor analysis (EFA). The main data were gathered from 537 respondents. Partial least squares structural equation modeling (PLS-SEM) procedures were used to examine the hypotheses
DOI: 10.6084/m9.figshare.22427992.v1
title: Ocean acidification has a strong effect on communities living on plastic in mesocosms

description: We conducted a mesocosm experiment to examine how ocean acidification (OA) affects communities of prokaryotes and eukaryotes growing on single-use drinking bottles in subtropical eutrophic waters of the East China Sea. Based on 16S rDNA gene sequencing, simulated high CO2 significantly altered the prokaryotic community, with the relative abundance of the phylum Planctomycetota increasing by 49 % under high CO2. Under high CO2, prokaryotes in plastisphere significantly enhanced nitrogen dissimilation and ureolysis, raising the possibility that elevated CO2 may modify nutrient cycling in subtropical eutrophic waters. The relative abundance of pathogenic and animal parasite bacteria also increased under simulated high CO2. Our results show that simulated high CO2 significantly affected some secondary producers based on 18S rDNA gene sequencing. For example, Mayorella amoebae were highly resistant to OA whereas labyrinthulids were sensitive to high CO2. This shows that OA may alter plastisphere food chains in subtropical eutrophic waters.
DOI: 10.6084/m9.figshare.22427992
title: Ocean acidification has a strong effect on communities living on plastic in mesocosms

description: We conducted a mesocosm experiment to examine how ocean acidification (OA) affects communities of prokaryotes and eukaryotes growing on single-use drinking bottles in subtropical eutrophic waters of the East China Sea. Based on 16S rDNA gene sequencing, simulated high CO2 significantly altered the prokaryotic community, with the relative abundance of the phylum Planctomycetota increasing by 49 % under high CO2. Under high CO2, prokaryotes in plastisphere significantly enhanced nitrogen dissimilation and ureolysis, raising the possibility that elevated CO2 may modify nutrient cycling in subtropical eutrophic waters. The relative abundance of pathogenic and animal parasite bacteria also increased under simulated high CO2. Our results show that simulated high CO2 significantly affected some secondary producers based on 18S rDNA gene sequencing. For example, Mayorella amoebae were highly resistant to OA whereas labyrinthulids were sensitive to high CO2. This shows that OA may alter plastisphere food chains in subtropical eutrophic waters.
DOI: 10.6084/m9.figshare.22427992.v3
title: Ocean acidification has a strong effect on communities living on plastic in mesocosms

description: We conducted a mesocosm experiment to examine how ocean acidification (OA) affects communities of prokaryotes and eukaryotes growing on single-use drinking bottles in subtropical eutrophic waters of the East China Sea. Based on 16S rDNA gene sequencing, simulated high CO2 significantly altered the prokaryotic community, with the relative abundance of the phylum Planctomycetota increasing by 49 % under high CO2. Under high CO2, prokaryotes in plastisphere significantly enhanced nitrogen dissimilation and ureolysis, raising the possibility that elevated CO2 may modify nutrient cycling in subtropical eutrophic waters. The relative abundance of pathogenic and animal parasite bacteria also increased under simulated high CO2. Our results show that simulated high CO2 significantly affected some secondary producers based on 18S rDNA gene sequencing. For example, Mayorella amoebae were highly resistant to OA whereas labyrinthulids were sensitive to high CO2. This shows that OA may alter plastisphere food chains in subtropical eutrophic waters.
DOI: 10.6084/m9.figshare.22427992.v2
title: Ocean acidification has a strong effect on communities living on plastic in mesocosms

description: We conducted a mesocosm experiment to examine how ocean acidification (OA) affects communities of prokaryotes and eukaryotes growing on single-use drinking bottles in subtropical eutrophic waters of the East China Sea. Based on 16S rDNA gene sequencing, simulated high CO2 significantly altered the prokaryotic community, with the relative abundance of the phylum Planctomycetota increasing by 49 % under high CO2. Under high CO2, prokaryotes in plastisphere significantly enhanced nitrogen dissimilation and ureolysis, raising the possibility that elevated CO2 may modify nutrient cycling in subtropical eutrophic waters. The relative abundance of pathogenic and animal parasite bacteria also increased under simulated high CO2. Our results show that simulated high CO2 significantly affected some secondary producers based on 18S rDNA gene sequencing. For example, Mayorella amoebae were highly resistant to OA whereas labyrinthulids were sensitive to high CO2. This shows that OA may alter plastisphere food chains in subtropical eutrophic waters.
DOI: 10.17632/t58td9fpv9.1
title: Software for the design of a low-cost soil moisture sensor 

description: In Vandôme et al., 2023, we explain how we designed a low-cost wireless sensor network for drip irrigation monitoring in Tunisia. All the software needed to do so is available below. 

1. Upload ”Pilowtech sx1276 arduino” file on Arduino IDE, fill in your sensor information and upload it on your Arduino Pro Mini microcontroller.
2. Upload ”Onsite reader arduino” file on the Arduino Uno and fill in your calibration parameters for onsite data reading.
3. Upload the ”3D package” file to a 3D printer to get your sensor packaging.
4. Upload the ”Nodered dataflow” file to Node-RED and adapt it to your data flow to get your sensor network ready!
DOI: 10.17632/csxwz539yg.1
title: Datasets (Izumi Kaneko et al., 2023)

description:  Datasets for the paper by Kaneko et al. (2023).
DOI: 10.17632/cf676bjd8c.1
title: The effect of tree decline over soil water content largely controls soil respiration dynamics in a Mediterranean woodland

description: The dataset is associated with the article https://doi.org/10.1016/j.agrformet.2023.109398 and contains original data showed in the Figures and Tables of the main text and supporting materials.
DOI: 10.17632/34ywyprjgz.1
title: Raw metagenomic data of bacterial communities of sediment sample collected from Central Reef Island of Vietnam

description: The dataset describes the composition of bacterial communities of sediment samples collected from Central Reef Island (Spratly islands) of Vietnam based on 16S rRNA gene sequences.
DOI: 10.17632/n45575pmsx.1
title: Different behavioural profiles between invasive and native nudibranchs: means for invasion success? 

description: Individual reaction of Godiva quadricolor to a tactile stimulus employed as a behavioural endpoint for measuring the state of alert and the escaping behavior
DOI: 10.17632/wc22mrs5n3.1
title: Data for: The long-lived Cenozoic positive relief in the south-Eastern Tian Shan driven by pure-shear crustal thickening

description: Detrital zircon U-Pb geochronologic analyses by LA-ICP-MS for the Cenozoice samples of the Tireke section on western Kuqa Depression at northern Tarim Basin
DOI: 10.17632/3tj47486nc.1
title: Carbon emissions & financial data, Metals&Mining

description: Dataset contains financial data (Revenue, EBITDA, EBITDA margin, PPE, Assets, Equity, Debt, ROE, Net Income, Capex) and data about carbon emissions of companies operating in Metals&Mining sector for 2019-2021 years.
DOI: 10.17632/yzsp69gptd.1
title: Release of liquid CO2 from the bottom of a duct

description: This data set includes the pressure and temperature records during the release of pressurized liquid CO2 from the bottom of a duct. The data was used to compare the evaporation characteristics during bottom releases with the previous top-release tests. Part of the data was utilized together with synchronous shadowgraph images to describe the evaporation mechanism and wave pattern inside the duct.
DOI: 10.17632/v9xgxb4fs7.1
title: Handheld XRF measurements on a Late Bronze Age Warrior Equipment

description: The database was part of ‚The Technology, Use and Manipulation of Weapons from the Late Bronze Age Transdanubia’ (No. 134910) c. project. Project No. 134910 has been implemented with the support provided from National Research, Development, and Innovation Fund of Hungary, financed under the PD_2020 funding scheme. The results are discussed in the J. G. Tarbay, B. Maróti, Z. Kis, Gy. Káli, B. Soós, The warrior returns home. Non-destructive analysis of the Late Bronze Age "warrior equipment" from the collection of the Ministry of Defense, Military History Institute and Museum, Hungary.
DOI: 10.17632/v9xgxb4fs7.2
title: Handheld XRF measurements on a Late Bronze Age Warrior Equipment

description: The database was part of ‚The Technology, Use and Manipulation of Weapons from the Late Bronze Age Transdanubia’ (No. 134910) c. project. Project No. 134910 has been implemented with the support provided from National Research, Development, and Innovation Fund of Hungary, financed under the PD_2020 funding scheme. The results are discussed in the J. G. Tarbay, B. Maróti, Z. Kis, Gy. Káli, B. Soós, The warrior returns home. Non-destructive analysis of the Late Bronze Age "warrior equipment" from the collection of the Ministry of Defense, Military History Institute and Museum, Hungary.
DOI: 10.17632/kckyd22bmm.1
title: Urban HEART 2011 Tehran-under 18 

description: Urban HEART 2011 Tehran-under 18 -Heigh-activites and socio economics
DOI: 10.17632/dfw8r794ph.1
title: Data for FiNuTyper: an automated deep learning-based platform for simultaneous fiber and nucleus type analysis in human skeletal muscle

description: Abstract:

While manual quantification is still considered the gold standard for skeletal muscle histological analysis, it is time-consuming and prone to investigator bias. We assembled an automated image analysis pipeline, FiNuTyper (Fiber and Nucleus Typer), from recently developed deep learning-based image segmentation methods, optimized for unbiased evaluation of fresh and postmortem human skeletal muscle. We validated and utilized SERCA1 and SERCA2 as type-specific myonucleus and myofiber markers. Parameters including myonuclei per fiber, myonuclear domain, central myonuclei per fiber, and grouped myofiber ratio were determined in a fiber type-specific manner, revealing a large degree of gender- and muscle-related heterogeneity. Our platform was also tested on pathological muscle tissue (ALS) and adapted for the detection of other resident cell types (leukocytes, satellite cells, capillary endothelium). In summary, we present an automated image analysis tool for the simultaneous quantification of myofiber and myonuclear types, to characterize the composition of healthy and diseased human skeletal muscle.
DOI: 10.17632/dfw8r794ph.2
title: Data for FiNuTyper: design and validation of an automated deep learning-based platform for simultaneous fiber and nucleus type analysis in human skeletal muscle

description: Abstract

Aim:
While manual quantification is still considered the gold standard for skeletal muscle histological analysis, it is time-consuming and prone to investigator bias. To address this challenge, we assembled an automated image analysis pipeline, FiNuTyper (Fiber and Nucleus Typer).

Methods:
We integrated recently developed deep learning-based image segmentation methods, optimized for unbiased evaluation of fresh and postmortem human skeletal muscle,  and utilized SERCA1 and SERCA2 as type-specific myonucleus and myofiber markers after validating them against the traditional use of MyHC isoforms. 

Results:
Parameters including cross-sectional area, myonuclei per fiber, myonuclear domain, central myonuclei per fiber, and grouped myofiber ratio were determined in a fiber type-specific manner, revealing that a large degree of sex- and muscle-related heterogeneity could be detected using the pipeline. Our platform was also tested on pathological muscle tissue (ALS, IBM) and adapted for the detection of other resident cell types (leukocytes, satellite cells, capillary endothelium). 

Conclusion:
In summary, we present an automated image analysis tool for the simultaneous quantification of myofiber and myonuclear types, to characterize the composition and structure of healthy and diseased human skeletal muscle.

Keywords
Skeletal muscle, myonuclei, myofibers, SERCA, automated image analysis
DOI: 10.20363/zfmk-coll.myriapoda-2023-02
title: ZFMK Myriapoda Collection

description: The collection Myriapoda at the Leibniz Institute for the Analysis of Biodiversity Change (LIB) - Museum Koenig Bonn contain around 12.000 specimens, many in absolute alcohol for DNA studies. The pill millipedes of the order Glomerida and Sphaerotheiida are well represented.
DOI: 10.17632/dfw8r794ph.3
title: Data for FiNuTyper: design and validation of an automated deep learning-based platform for simultaneous fiber and nucleus type analysis in human skeletal muscle

description: Abstract

Aim:
While manual quantification is still considered the gold standard for skeletal muscle histological analysis, it is time-consuming and prone to investigator bias. To address this challenge, we assembled an automated image analysis pipeline, FiNuTyper (Fiber and Nucleus Typer).

Methods:
We integrated recently developed deep learning-based image segmentation methods, optimized for unbiased evaluation of fresh and postmortem human skeletal muscle,  and utilized SERCA1 and SERCA2 as type-specific myonucleus and myofiber markers after validating them against the traditional use of MyHC isoforms. 

Results:
Parameters including cross-sectional area, myonuclei per fiber, myonuclear domain, central myonuclei per fiber, and grouped myofiber ratio were determined in a fiber type-specific manner, revealing that a large degree of sex- and muscle-related heterogeneity could be detected using the pipeline. Our platform was also tested on pathological muscle tissue (ALS, IBM) and adapted for the detection of other resident cell types (leukocytes, satellite cells, capillary endothelium). 

Conclusion:
In summary, we present an automated image analysis tool for the simultaneous quantification of myofiber and myonuclear types, to characterize the composition and structure of healthy and diseased human skeletal muscle.

Keywords
Skeletal muscle, myonuclei, myofibers, SERCA, automated image analysis
DOI: 10.17632/rwgyvnsbm7.1
title: Dataset for: The need for hemispheric separation in pairwise structural disconnection studies

description: Dataset for the study on hemispheric separation in pairwise structural disconnection studies by Röhrig, Rosenzopf, Wöhrstein, and Karnath.
Included are simulated data and analyses results.
For more information, see the text-files included in the Results-folder.
DOI: 10.17632/mzchtbbzc4.1
title: Congestion Paper data

description: Power consumption and renewable generation profiles  used for "Congestion Forecast Framework based on Probabilistic Power Flow and Machine learning for Smart Distribution Grids" Research paper
DOI: 10.17632/hc8cstzcxx.1
title: Data_Multi-objective optimization models for the design of water distribution networks by exploring scenario-based approaches

description: Nodal demands scenarios of Fossolo network for the case of 7 scenarios with and without sub-intervals and 11 scenarios with and without sub-intervals.
DOI: 10.17632/vctx8x86m2.1
title: The Effect of Capital Structure on Performance

description: The data set  attached hereunder was used to obtain an empirical evidence related to capital stricture and performance
DOI: 10.17632/97sdcb5273.1
title: A Single-copy Knock In Translating Ribosome ImmunoPrecipitation tool kit for tissue specific profiling of actively translated mRNAs in C. elegans. Wester and Lanjuin et al.

description: Translating Ribosome Affinity Purification (TRAP) methods have emerged as a powerful approach to profile actively translated transcripts in specific cell and tissue types. Epitope tagged ribosomal subunits are expressed in defined cell populations and used to pull down ribosomes and their associated mRNAs, providing a snapshot of cell-type specific translation occurring in that space and time. Current TRAP toolkits available to the C. elegans community have been built using multi-copy arrays, randomly integrated in the genome. Here we introduce a Single-copy Knock In Translating Ribosome ImmunoPrecipitation (SKI TRIP) tool kit, a collection of C. elegans strains engineered by CRISPR in which tissue specific expression of FLAG tagged ribosomal subunit protein RPL-22 is driven by cassettes present in single copy from defined sites in the genome. In depth characterization of the SKI TRIP strains and methodology shows that 3xFLAG tagged RPL-22 expressed from its endogenous locus or within defined cell types incorporates into actively translating ribosomes and can be used to efficiently and cleanly pull down cell-type specific transcripts without impacting overall mRNA translation or fitness of the animal. We propose SKI TRIP use for the study of processes that are acutely sensitive to changes in translation, such as aging.
DOI: 10.34740/kaggle/dsv/5275191
title: Elon Musk Tweets
DOI: 10.17632/pkx5grckv2.1
title: Standard format for writing paper in industrial engineering web of science journal

description: This research suggests a standard format for writing a paper in industrial engineering web of science journal. It is the first time generating a solution format for this author's problem. As a result, we design a simple and suitable format for writing a paper in industrial engineering area. This format aims to help industrial engineering for preparing a paper for web of science journal.
DOI: 10.17632/gp9jpfnhy8.1
title: Quantitative Results of APPE Performance

description: Results and major findings of APPE performance by race on pharmacy practice experiences.
DOI: 10.17632/xtr9dbt56d.1
title: CBME Resident Survey 

description: A survey used to collect resident perspectives about CBME.
DOI: 10.17632/7f9d6k8m85.1
title: Growth in the e-commerce sector

description: Thid dataset contains the information about e-commerce companies globally.

The indicators include: region of operations (developed / developing), business-model (1st party trade / 3d party trade), key financial indicators
DOI: 10.20363/zfmk-coll.ornithology-2023-02
title: ZFMK Ornithology Collection

description: The bird collection at the collection at the Leibniz Institute for the Analysis of Biodiversity Change (LIB) - Museum Koenig Bonn contains  comprises about 80,000 - 85,000 individuals, most of them (76,000) are specimens, the rest are mounted preparations. The collection is complemented by skeletons and specimens in alcohol (ca. 3,000). In addition, the egg collection encompasses 60,000 single objects including ca. 1,700 nests. In 2003, we began to build up a collection of tissue samples which is continuously growing.
DOI: 10.5281/zenodo.7787713
title: ngungara_backed_artefacts: v1.0.0

description: The data and R code to accompany Way, A. M., Koungoulos, L., Wyatt-Spratt, S., & Hiscock, P. (2023). Investigating hafting and composite tool repair as factors creating variability in backed artefacts: Evidence from from Ngungara (Weereewa/Lake George), Southeastern Australia. <em>Archaeology in Oceania</em>, 1–18. Code Author: Amy Mosig Way, Loukas Koungoulos, Simon Wyatt-Spratt Abstract: Across the Australian continent, backed artefacts are produced in enormous numbers during the mid-late Holocene. Previous examinations have revealed variation in the average shape of these artefacts, at both continental and regional scales. To better understand the factors creating this variability, we examine a large assemblage of backed artefacts from Ngungara (Weereewa/Lake George), in southeastern Australia. This is one of the few open sites in Australia which has high-resolution evidence for spatially distinct, short-term workshops. Within these well-bounded workshops both locally manufactured and imported backed artefacts are present. However, across this landscape the shape of these artefacts is not uniform; rather similarly shaped backed artefacts are concentrated in different workshop areas. Through the analysis of backed artefacts in different workshops, we suggest that ‘insert copying’ or the replacement of spent inserts with similarly shaped, locally manufactured artefacts creates variability in backed artefact shape. Acknowledgements: The authors would like to thank the traditional landowners for their assistance in undertaking the original PhD study and for sharing language names for the lake.