cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1238857
title: Literature Consistency Of Bioinformatics Sequence Databases Is Effective For Assessing Record Quality

description: Bioinformatics sequence databases such as Genbank or UniProt contain hundreds of millions of records of genomic data. These records are derived from direct submissions from individual laboratories, as well as from bulk submissions from large-scale sequencing centres; their diversity and scale means that they suffer from a range of data quality issues including errors, discrepancies, redundancies, ambiguities, incompleteness and inconsistencies with the published literature. In this work, we seek to investigate and analyze the data quality of sequence databases from the perspective of a curator, who must detect anomalous and suspicious records. Specifically, we emphasize the detection of inconsistent records with respect to the literature. Focusing on GenBank, we propose a set of 24 quality indicators, which are based on treating a record as a query into the published literature, and then use query quality predictors. We then carry out an analysis that shows that the proposed quality indicators and the quality of the records have a mutual relationship, in which one depends on the other. We propose to represent record literature consistency as a vector of these quality indicators. By reducing the dimensionality of this representation for visualization purposes using principal component analysis, we show that records which have been reported as inconsistent with the literature fall roughly in the same area, and therefore share similar characteristics. By manually analyzing records not previously known to be erroneous that fall in the same area than records know to be inconsistent, we show that one record out of four is inconsistent with respect to the literature. This high density of inconsistent record opens the way towards the development of automatic methods for the detection of faulty records. We conclude that literature inconsistency is a meaningful strategy for identifying suspicious records.
DOI: 10.5281/zenodo.1238858
title: Literature Consistency Of Bioinformatics Sequence Databases Is Effective For Assessing Record Quality

description: Bioinformatics sequence databases such as Genbank or UniProt contain hundreds of millions of records of genomic data. These records are derived from direct submissions from individual laboratories, as well as from bulk submissions from large-scale sequencing centres; their diversity and scale means that they suffer from a range of data quality issues including errors, discrepancies, redundancies, ambiguities, incompleteness and inconsistencies with the published literature. In this work, we seek to investigate and analyze the data quality of sequence databases from the perspective of a curator, who must detect anomalous and suspicious records. Specifically, we emphasize the detection of inconsistent records with respect to the literature. Focusing on GenBank, we propose a set of 24 quality indicators, which are based on treating a record as a query into the published literature, and then use query quality predictors. We then carry out an analysis that shows that the proposed quality indicators and the quality of the records have a mutual relationship, in which one depends on the other. We propose to represent record literature consistency as a vector of these quality indicators. By reducing the dimensionality of this representation for visualization purposes using principal component analysis, we show that records which have been reported as inconsistent with the literature fall roughly in the same area, and therefore share similar characteristics. By manually analyzing records not previously known to be erroneous that fall in the same area than records know to be inconsistent, we show that one record out of four is inconsistent with respect to the literature. This high density of inconsistent record opens the way towards the development of automatic methods for the detection of faulty records. We conclude that literature inconsistency is a meaningful strategy for identifying suspicious records.
DOI: 10.5281/zenodo.1238895
title: Binary Black-Hole Simulation Sxs:Bbh:1330

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238896
title: Binary Black-Hole Simulation Sxs:Bbh:1330

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239238
title: Binary Black-Hole Simulation Sxs:Bbh:1238

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.17632/45brkmjmcj.1
title: Data for: Comparative Transcriptomics and Genomic Patterns of Discordance in Capsiceae (Solanaceae)

description: Here we provide 6515 gene alignments for species of Capsicum and Lycianthes. These alignments include Bayes blocks, indicating their best fit model of molecular evolution (BIC criterion). These files are ready to run in MrBayes.
DOI: 10.5281/zenodo.1238678
title: Binary Black-Hole Simulation Sxs:Bbh:0695

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239237
title: Binary Black-Hole Simulation Sxs:Bbh:1238

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239243
title: Binary Black-Hole Simulation Sxs:Bbh:1315

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239244
title: Binary Black-Hole Simulation Sxs:Bbh:1315

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239671
title: Binary Black-Hole Simulation Sxs:Bbh:1283

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239672
title: Binary Black-Hole Simulation Sxs:Bbh:1283

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238174
title: Binary Black-Hole Simulation Sxs:Bbh:0684

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238176
title: Binary Black-Hole Simulation Sxs:Bbh:0945

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238178
title: Binary Black-Hole Simulation Sxs:Bbh:1024

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.14455/nrct.fas.2016.737
title: ผลิตกะโหลกเทียมแบบมีรูพรุนด้วยเครื่องพิมพ์สามมิติ
DOI: 10.14455/nrct.fas.2016.738
title: ศูนย์พันธุวิศวกรรม และเทคโนโลยีชีวภาพแห่งชาติ (BIOTEC)
DOI: 10.14455/nrct.fas.2016.739
title: The Researcher : แคลเซียม เสริมทัพสกัดภัยเงียบ
DOI: 10.5281/zenodo.1238682
title: Binary Black-Hole Simulation Sxs:Bbh:0934

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238898
title: Binary Black-Hole Simulation Sxs:Bbh:1262

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238899
title: Binary Black-Hole Simulation Sxs:Bbh:1262

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239245
title: Binary Black-Hole Simulation Sxs:Bbh:1241

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239246
title: Binary Black-Hole Simulation Sxs:Bbh:1241

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239701
title: Character mentions in the German novel "Corpus Delicti" by Juli Zeh and annotations

description: This file contains all character mentions in the German novel "Corpus Delicti" by Juli Zeh. The annotation was conducted by members of the research group hermA (www.herma.uni-hamburg.de). The file includes the following columns:


	id
	token: tokens of the character mention
	entity_nr: the (arbitrary) entity number. All mentions of one character share the same entity number.
	token_nr: position of the mention in the text in tokens
	sentence_nr: position of the mention in the text in sentences
	chapter: number of the chapter the mention occurs in (49 chapters in total)
	direct_speech: True if the mention occurs between quotation marks
	entity_name: a mapping of the entity number to the most frequent proper name used for the entity (if available)
	form: grammatical form of the mention, derived from an automatic part-of-speech tagging (NE = proper name; NP = noun phrase; PPER = personal pronoun; PPOSAT = possessive pronoun)
DOI: 10.5517/ccdc.csd.cc1zsfkr
title: CCDC 1840735: Experimental Crystal Structure Determination

description: Related Article: Tashika Agarwal, Sandeep Kaur-Ghumaan|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.14455/nrct.fas.2016.740
title: หัวใจเทียมพ่วงเนื้อเยื่อวัว
DOI: 10.14455/nrct.fas.2016.741
title: งานวิจัยเพื่อท้องถิ่น สู่การเรียนรู้ตลอดชีวิต
DOI: 10.14455/nrct.img.2016.311
title: สมรรถนะสากลของนักศึกษาสาขาทันตแพทย์ศาสตร์ พยาบาลศาสตร์ และสาขาวิศวกรรมศาสตร์
DOI: 10.14455/nrct.img.2016.314
title: การปรับปรุงพันธุ์เฟื่องฟ้าพันธุ์สาวิตรีโดยการใช้รังสีแกมมา
DOI: 10.4225/22/5ae93e967d2a6
title: Summary metadata

description: A summary of information about each of the tokens in the collection.<br>
DOI: 10.5281/zenodo.1238424
title: Binary Black-Hole Simulation Sxs:Bbh:0651

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238426
title: Binary Black-Hole Simulation Sxs:Bbh:0652

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238689
title: Binary Black-Hole Simulation Sxs:Bbh:1083

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239702
title: Character mentions in the German novel "Corpus Delicti" by Juli Zeh and annotations

description: This file contains all character mentions in the German novel "Corpus Delicti" by Juli Zeh. The annotation was conducted by members of the research group hermA (www.herma.uni-hamburg.de). The file includes the following columns:


	id
	token: tokens of the character mention
	entity_nr: the (arbitrary) entity number. All mentions of one character share the same entity number.
	token_nr: position of the mention in the text in tokens
	sentence_nr: position of the mention in the text in sentences
	chapter: number of the chapter the mention occurs in (49 chapters in total)
	direct_speech: True if the mention occurs between quotation marks
	entity_name: a mapping of the entity number to the most frequent proper name used for the entity (if available)
	form: grammatical form of the mention, derived from an automatic part-of-speech tagging (NE = proper name; NP = noun phrase; PPER = personal pronoun; PPOSAT = possessive pronoun)
DOI: 10.17632/x527k5kgwn.1
title: Data for: Urban informality, housing insecurity, and social exclusion; concept and case study assessment for sustainable urban development
DOI: 10.5281/zenodo.1238179
title: Using The Socialise App To Collect Smartphone Sensor Data For Mental Health Research: A Feasibility Study

description: To investigate the feasibility of collecting smartphone sensor data for mental health research, we tested the Socialise app that was developed at the Black Dog Institute in a group of people with a lived experience of mental health challenges (n=32). Bluetooth, GPS and battery status data were collected at regular intervals (3, 4, 5 or 8 minutes) for 4 weeks. In addition, survey data was collected using the app to investigate the views of participants on user experience and the acceptability of passive data collection for mental health research. No mental health data was collected as part of the feasibility study.
description: The research was financially supported by NHMRC Centre of Research Excellence in Suicide Prevention APP1042580 and NHMRC John Cade Fellowship APP1056964. Tjeerd Boonstra was supported by a NARSAD Young Investigator Grant from the Brain & Behavior Research Foundation.
DOI: 10.5281/zenodo.1238430
title: Binary Black-Hole Simulation Sxs:Bbh:0766

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238434
title: Binary Black-Hole Simulation Sxs:Bbh:0656

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238436
title: Binary Black-Hole Simulation Sxs:Bbh:1081

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238679
title: Rapid Review Simulation Dataset And Code

description: Dataset and statistical code for rapid review simulation study
DOI: 10.5281/zenodo.1238680
title: Rapid Review Simulation Dataset And Code

description: Dataset and statistical code for rapid review simulation study
DOI: 10.5281/zenodo.1238691
title: Binary Black-Hole Simulation Sxs:Bbh:0731

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238907
title: Binary Black-Hole Simulation Sxs:Bbh:1335

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238908
title: Binary Black-Hole Simulation Sxs:Bbh:1335

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239248
title: Binary Black-Hole Simulation Sxs:Bbh:1236

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239249
title: Binary Black-Hole Simulation Sxs:Bbh:1236

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.17632/8gpvzcssfv.1
title: Financial structure and systemic risk: Evidence from Chinese reform

description: The law dataset for 'Financial structure and systemic risk: Evidence from Chinese reform'
DOI: 10.17632/d27w8kzrs2.1
title: Data for: Quantitative Analysis of Multimodal Speech Data

description: Data for "Quantitative Analysis of Multimodal Speech Data," including raw data and analysis scripts
DOI: 10.5281/zenodo.1238438
title: Binary Black-Hole Simulation Sxs:Bbh:0754

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238440
title: Binary Black-Hole Simulation Sxs:Bbh:0994

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238693
title: Binary Black-Hole Simulation Sxs:Bbh:0723

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238696
title: Salivary Levels Of Cariogenic Bacterial Species During Orthodontic Treatment With Thermoplastic Aligners Or Fixed Appliances: A Prospective Cohort Study

description: Dataset for the analyses of the paper.
DOI: 10.5281/zenodo.1238697
title: Salivary Levels Of Cariogenic Bacterial Species During Orthodontic Treatment With Thermoplastic Aligners Or Fixed Appliances: A Prospective Cohort Study

description: Dataset for the analyses of the paper.
DOI: 10.5281/zenodo.1239356
title: Binary Black-Hole Simulation Sxs:Bbh:1250

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239357
title: Binary Black-Hole Simulation Sxs:Bbh:1250

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.17632/grrwh4db7w.1
title: R_scripts_and_SimaPro_model_runs
DOI: 10.17632/k5hvbmdt47.1
title: Box shaped Acoustic Guitar Music Notes for Plectrum Plucked String 1 with all 20 frets

description: The above music notes are recorded for Box Shaped Acoustic Guitar for the String 1 with all its 20 frets for Plectrum plucking style.
DOI: 10.17632/n6fv2kwzcw.1
title: Photo-trapping Grid Exact Location Map

description: Map showing the exact location of the photo-trapping grids described in the article "Environmental DNA reveals the drivers of bovine tuberculosis"
DOI: 10.17632/pfv2jvf8bk.1
title: Box shaped Acoustic Guitar Music Notes for string 1 and its 20 frets for finger plucking style

description: The data for Music Notes for two plucking style is created. One is Finger Plucked and second is Plectrum Plucked. I have uploaded the music files for String 1 with all its 20 frets for finger plucking styles.
DOI: 10.17632/pw2bct9knx.1
title: Sampled Farms Offcial TB Testing

description: Supporting data for the article "Environmental DNA reveals the drivers of bovine tuberculosis". The official TB testing annual results are shown
DOI: 10.5281/zenodo.1238442
title: Binary Black-Hole Simulation Sxs:Bbh:1072

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238695
title: Binary Black-Hole Simulation Sxs:Bbh:0699

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238913
title: Full-Length Huntingtin Constructs For Eukaryotic Expression Of Huntingtin Protein With Different Polyq Lengths 2018/05/01

description: Huntingtin structure-function open lab notebook project: Full-length huntingtin constructs for eukaryotic expression of huntingtin protein with different polyQ lengths 2018/05/01
description: The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.5281/zenodo.1238914
title: Full-Length Huntingtin Constructs For Eukaryotic Expression Of Huntingtin Protein With Different Polyq Lengths 2018/05/01

description: Huntingtin structure-function open lab notebook project: Full-length huntingtin constructs for eukaryotic expression of huntingtin protein with different polyQ lengths 2018/05/01
description: The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.5281/zenodo.1239382
title: Binary black-hole simulation SXS:BBH:1270

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239383
title: Binary Black-Hole Simulation Sxs:Bbh:1270

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239698
title: Binary Black-Hole Simulation Sxs:Bbh:0314

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239833
title: Full-Length Huntingtin Q19, Q23, Q42 And Q54 Expression And Purification – 2018/04/23

description: Huntingtin structure-function open lab notebook project. Full-length huntingtin Q19, Q23, Q42 and Q54 expression and purification – 2018/04/23.
description: The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.5281/zenodo.1239834
title: Full-Length Huntingtin Q19, Q23, Q42 And Q54 Expression And Purification – 2018/04/23

description: Huntingtin structure-function open lab notebook project. Full-length huntingtin Q19, Q23, Q42 and Q54 expression and purification – 2018/04/23.
description: The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.5281/zenodo.1238444
title: Binary Black-Hole Simulation Sxs:Bbh:0745

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238699
title: Binary Black-Hole Simulation Sxs:Bbh:0679

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1238703
title: Binary Black-Hole Simulation Sxs:Bbh:1018

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239384
title: Binary Black-Hole Simulation Sxs:Bbh:1339

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239385
title: Binary Black-Hole Simulation Sxs:Bbh:1339

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.1239387
title: Survey Results - Use Of New Technologies For Citizen Participation

description: This survey took place in Münster, Germany between April 07, 2016 and April 17, 2016. The goal of the survey was collect citizens' perspectives about new technologies' role for citizen participation. The survey questions, as well as its results are provided in German. The datasets features both the raw data (i.e., all answers preprocessed to keep all participants anonymous), and the summary of the survey results.
DOI: 10.5281/zenodo.1239835
title: Large-Scale Full-Length Htt Q23 Purification From Hek293T – 2018/04/30

description: Huntingtin structure-function open lab notebook project. Large-scale full-length HTT Q23 purification from HEK293T – 2018/04/30.
description: The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.5281/zenodo.1239836
title: Large-Scale Full-Length Htt Q23 Purification From Hek293T – 2018/04/30

description: Huntingtin structure-function open lab notebook project. Large-scale full-length HTT Q23 purification from HEK293T – 2018/04/30.
description: The SGC is a registered charity (number 1097737) that receives funds from AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada through Ontario Genomics Institute [OGI-055], Innovative Medicines Initiative (EU/EFPIA) [ULTRA-DD grant no. 115766], Janssen, Merck KGaA, Darmstadt, Germany, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science (MRIS), Pfizer, São Paulo Research Foundation-FAPESP, Takeda, and Wellcome.
DOI: 10.5281/zenodo.774737
title: Survey Results - Use Of New Technologies For Citizen Participation

description: This survey took place in Münster, Germany between April 07, 2016 and April 17, 2016. The goal of the survey was collect citizens' perspectives about new technologies' role for citizen participation. The survey questions, as well as its results are provided in German. The datasets features both the raw data (i.e., all answers preprocessed to keep all participants anonymous), and the summary of the survey results.