cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/7d4m8wcnrp.1
title: Plamsa Proteomics 

description: The plasma metabolome from the control and CSF mice was quantified with a high throughput targeted metabolite (HM350 Metabolome). 20 μL of plasma samples and standards were added to Eppendorf vials containing 120 μL of working solution. Then, the mixtures were incubated at room temperature for 20 min to facilitate protein precipitation. After centrifugation at 18,000 g for 20 min at 4°C, 30 μL of supernatant was transferred to a 96-well plate with 20 μL derivative reagent working solution and EDC working solution. The assay plate was incubated for 60 min at 30°C on a Peltier thermocycler. 100 μL of ice-cold methanol (polar fraction) was added into each well, incubated at 1200 rpm for 5min, and centrifuged at 4000 g for 30 min at 4°C. The 100 μL of supernatant was then transferred to another microplate pre-loaded with an internal standard II working solution and the mixture was quantified using high-performance liquid chromatography-tandem mass spectrometry (LC-MS/MS). The extract was gradient eluted from a C18 column (Waters UPLC BEH C18-2.1x100 mm, 1.7 mm) using 0.1% formic acid (solvent A) and 70% acetonitrile/30% isopropanol (solvent B). The gradient was linearly changed as follows: 0-1.0 min, 5% solvent B; 1.0-5 min 5% solvent B; 5-9 min,70% solvent B; 9-11 min, 50% solvent B; 11-13.5 min, 22% solvent B; 13.5-14.00 min, 95% solvent B, at a flow rate of 0.4 mL/min; 14.00-16.00min, 100% solvent B, the flow rate of 0.6 mL/min; 16.00-18.00min, 5% solvent B, the flow rate of 0.4 mL/min. The column was maintained at 40°C. The mass spectrometer was set for electrospray ionization (ESI) operated in ESI+/ESI- mode. The source parameters were as follows: capillary voltage, 5500 V for the positive ionization and 4500 V for the negative ionization; gas temperature, 550°C; Ion source Gas1, 60 psi; Ion source Gas2, 60 psi; CUR, 35 psi. The molecular ion and fragment for each compound were quantified based on standards.
DOI: 10.17632/gbhpdkf8pg.1
title: Bodily expressed emotion understanding through integrating Laban Movement Analysis

description: We present the BoME dataset.
The annotations are in the folder of BoME, named LMA_coding_cleaned_enlarge_train.csv, LMA_coding_cleaned_enlarge_val.csv, and LMA_coding_cleaned_enlarge.csv

We also provide the code to estimate LMA elements and the code to enhance BEEU with BoME. They are in the folders emotion_action and emotion_swin_video. To reproduce the LMA element estimation 
experiments, please refer to README1.md. To reproduce the BEEU experiments, please refer to README2.md. 
Due to some unknown bugs, Mendeley does not display README1.md and README2.md sometimes. You can also get README1.md and README2.md from here (https://pennstateoffice365-my.sharepoint.com/:f:/g/personal/czw390_psu_edu/EswU_gNZ_phEmYNgxvlsLR0B9bfcGa-BoG2r0LVr69W8XA?e=NrBZ7S).

We provide our checkpoint files as well (including TSN.pth, SlowFast.pth, PoseC3D.pth, V-Swin.pth, MANet.pth). Sometimes Mendeley does not display all the files in the folder checkpoint, emotion_action, and emotion_swin_video. Their backups are here (https://pennstateoffice365-my.sharepoint.com/:f:/g/personal/czw390_psu_edu/EnKgLsQYlIhDmEqlYND8SuEBTCLaX7q-4ODMB_S9w0mxqA?e=6a6BHK).
DOI: 10.17632/6pk92h4kdb.1
title: Photochemical transformation of terrestrial dissolved organic matter derived from multiple sources in tropical plantations

description: Raw data from general test, EEM and FT-ICR MS.
DOI: 10.6084/m9.figshare.23615505
title: Chaetophiloscia sicula data from iNaturalist downloaded 27-VI-2023

description: On June 27, 2023, observation records of Chaetophiloscia sicula were downloaded from iNaturalist. These records represent the first documented occurrences of the species in New Jersey, North Carolina, Tennessee, Texas, and Virginia. Nathan T. Jones confirmed all iNaturalist records by examining the accompanying photos. Moreover, specimens from the Texas and Virginia populations were further verified through dissection. <br> <br>
DOI: 10.6084/m9.figshare.23615505.v2
title: Chaetophiloscia sicula data from iNaturalist downloaded 27-VI-2023

description: On June 27, 2023, observation records of Chaetophiloscia sicula were downloaded from iNaturalist. These records represent the first documented occurrences of the species in New Jersey, North Carolina, Tennessee, Texas, and Virginia. Nathan T. Jones confirmed all iNaturalist records by examining the accompanying photos. Moreover, specimens from the Texas and Virginia populations were further verified through dissection. <br> <br>
DOI: 10.6084/m9.figshare.23615505.v1
title: Chaetophiloscia sicula data from iNaturalist (downloaded 27-VI-2023)

description: Observation records of Chaetophiloscia sicula; downloaded on 27-VI-2023 from iNaturalist. First records of the species from New Jersey, North Carolina, Tennessee, Texas, and Virginia. All iNaturalist records were confirmed via photo by Nathan T. Jones, with specimens from the Texas and Virginia populations being confirmed via dissection. <br> <br>
DOI: 10.25345/c5vq2sm6r
title: MassIVE MSV000092380 - Polarized Desmosome and Hemidesmosome Shedding via Exosomes is an Early Indicator of Outer Blood-Retina Barrier Dysfunction
title: The retinal pigmented epithelium (RPE) makes up the outer blood-retinal barrier, supports photoreceptor function of the eye and is constantly damaged by oxidative stress. Dysfunction of the RPE underlies pathology leading to development of age-related macular degeneration (AMD), the leading cause of vision loss among the elderly in industrialized nations. A major function of the RPE is to process photoreceptor outer segments which relies on the proper functioning of the RPE endocytic pathways and endosomal trafficking. RPE-released exosomes and other extracellular vesicles are essential parts of these pathways and may be early indicators of cellular stress. To test this, we used a polarized primary RPE cell culture model under chronic subtoxic oxidative stress to study the role of exosomes in the extracellular matrix (ECM) changes that underlie the early and late stages of AMD. Resulting unbiased proteomic analyses of highly purified basolateral exosomes from oxidatively stressed RPE cultures revealed changes to proteins involved in epithelial barrier integrity, that were detectable prior to overt cellular dysfunction. There were also changes to proteins accumulating in the basal-side sub-RPE ECM during oxidative stress, that could be prevented in the presence of an inhibitor of exosome release. We show for the first time that chronic subtoxic oxidative stress in primary RPE cultures induces proteomic changes in exosomes including basal-side specific desmosome and hemidesmosome shedding via exosomes. We also show that release of these exosomes correlates with ECM changes that can be partially prevented by inhibition of exosome release. These findings open a completely novel avenue for therapeutic intervention and access to early biomarkers of cellular dysfunction in aging-related retinal diseases, in particular AMD, and broadly from blood-CNS barriers in other neurodegenerative diseases.
DOI: 10.7910/dvn/vdeekn/id3u36
title: t201603031.txt

description: :unav
DOI: 10.7910/dvn/vdeekn/2n1aki
title: t201808141.txt

description: :unav
DOI: 10.7910/dvn/vdeekn/4rkcwx
title: metadata.tab

description: :unav
DOI: 10.7910/dvn/vdeekn/j15byf
title: t201808151.txt

description: :unav
DOI: 10.7910/dvn/vdeekn/jjdlaw
title: t202001091.txt

description: :unav
DOI: 10.7910/dvn/vdeekn/k7posl
title: t201904261.txt

description: :unav
DOI: 10.7910/dvn/vdeekn/qeo9z3
title: t201904171.txt

description: :unav
DOI: 10.7910/dvn/vdeekn/xlq46x
title: t201808181.txt

description: :unav
DOI: 10.7910/dvn/vdeekn/gmb6wi
title: t202002161.txt

description: :unav
DOI: 10.7910/dvn/vdeekn/hdespn
title: t201912181.txt

description: :unav
DOI: 10.7910/dvn/vdeekn/inombw
title: t201904172.txt

description: :unav
DOI: 10.7910/dvn/vdeekn/ioafri
title: t201808142.txt

description: :unav
DOI: 10.7910/dvn/vdeekn/mhqgrx
title: t202002171.txt

description: :unav
DOI: 10.7910/dvn/vdeekn/pq00ci
title: t202002271.txt

description: :unav
DOI: 10.7910/dvn/vdeekn
title: Kanhaiya Kumar: Political Speeches

description: Selected speeches of Indian politician Kanhaiya Kumar. I would like to thank Victor Alembik for his contribution in collecting and coordinating the translation of key speeches of Kanhaiya Kumar.
DOI: 10.7910/dvn/vdeekn/zrqz1a
title: t201509101.txt

description: :unav
DOI: 10.6084/m9.figshare.23648892
title: <strong>Table II</strong>. Results for reflective measurement models

description: Results for reflective measurement models.
DOI: 10.6084/m9.figshare.23648892.v1
title: <strong>Table II</strong>. Results for reflective measurement models

description: Results for reflective measurement models.
DOI: 10.6084/m9.figshare.23648901
title: <strong>Table III</strong>. Discriminant validity (Fornell–Larcker criterion and heterotrait–monotrait ratio, HTMT)

description: Discriminant validity results: Fornell–Larcker and heterotrait–monotrait ratio (HTMT) criteria.
DOI: 10.6084/m9.figshare.23648916
title: Datasets of the article "Do floral traits of buzz-pollinated plants and characteristics of visiting bee species explain patterns of compartmented interactions?"

description: Dataset related to the paper "Do floral traits of buzz-pollinated plants and characteristics of visiting bee species explain patterns of compartmented interactions?".
DOI: 10.6084/m9.figshare.23648916.v1
title: Datasets of the article "Do floral traits of buzz-pollinated plants and characteristics of visiting bee species explain patterns of compartmented interactions?"

description: Dataset related to the paper "Do floral traits of buzz-pollinated plants and characteristics of visiting bee species explain patterns of compartmented interactions?".
DOI: 10.6084/m9.figshare.23648919
title: <strong>Table IV. </strong>Discriminant validity (HTMT): confidence interval bias corrected.

description: Discriminant validity using HTMT ratio inference: confidence interval bias corrected.
DOI: 10.6084/m9.figshare.23648934
title: <strong>Table V. </strong>Significance and relevance of path coefficients (outer weights and outer loadings).

description: Significance and relevance of outer weights and outer loadings.
DOI: 10.6084/m9.figshare.23648934.v1
title: <strong>Table V. </strong>Significance and relevance of path coefficients (outer weights and outer loadings).

description: Significance and relevance of outer weights and outer loadings.
DOI: 10.6084/m9.figshare.23648928
title: Data of the included articles.xlsx

description: Information about the article, such as title, author, year of publication, study type, time of the study, area of study, study subjects and sources, age, Body Mass Index (BMI), diagnostic criteria, sample size, and prevalence.
DOI: 10.6084/m9.figshare.23648928.v1
title: Data of the included articles.xlsx

description: Information about the article, such as title, author, year of publication, study type, time of the study, area of study, study subjects and sources, age, Body Mass Index (BMI), diagnostic criteria, sample size, and prevalence.
DOI: 10.6073/pasta/be8dfad6ba3fcba435d041079c05959c
title: Monthly measurement summaries from Mount Fleming Meteorological Station (FLMM), McMurdo Dry Valleys, Antarctica (2011-2022, ongoing)

description: As part of the McMurdo Dry Valleys Long Term Ecological Research program, meteorological data are collected from various locations throughout the McMurdo Dry Valleys of Antarctica. This data package contains monthly measurement summaries derived from 15-minute data generated by the Mount Fleming Meteorological Station (FLMM), located at the head of Wright Valley.
DOI: 10.6084/m9.figshare.23632773.v2
title: <strong>The Causal Relationship between Thyroid Volume and Thyroid Disease: A Mendelian Randomization Study</strong>

description: 1.Supplementary Figure 1: Scatter plot for genetically predicted thyroid volume on thyroid diseases. Inverse variance weighted, weighted median, MR-Egger, simple mode and weighted mode slopes represent results from these regression analyses. 2.Supplementary Table 1: Information about the selected databases. 3.Supplementary Table 2: Information on the selected SNPs. 4.Supplementary Table 3: Five MR Methods estimate the causal effect of thyroid volume on thyroid disease and TSH. 5.Supplementary Table 4: Testing for genetic pleiotropy.
DOI: 10.5281/zenodo.8126859
title: Dataset and Software for High-resolution mantle flow models reveal importance of plate boundary geometry and slab pull forces on generating tectonic plate motions

description: This repository contains the plugin and dataset used to setup models in the manuscript: "High-resolution mantle flow models reveal importance of plate boundary geometry and slab pull forces on generating tectonic plate motions". It also includes the corresponding versions of the geodynamics software ASPECT and Worldbuilder which were used to develop the models in the paper. The material model plugin used in our models is in the "plugins" folder. The "models" folder contains the reference input parameter file described in the paper. All other model configurations shown in the paper can be obtained by modifying this parameter file. The input files used to set up the models are in the respective folder. Additionally, the Jupyter notebook used to compute residuals of our models is provided in the "scripts" folder.
DOI: 10.6073/pasta/4836325deaacf8554fac0cb1e28a2a68
title: Monthly measurement summaries from Explorers Cove Meteorological Station (EXEM), McMurdo Dry Valleys, Antarctica (1995-2022, ongoing)

description: As part of the McMurdo Dry Valleys Long Term Ecological Research program, meteorological data are collected from various locations throughout the McMurdo Dry Valleys of Antarctica. This package contains monthly measurement summaries derived from 15-minute data generated by the Explorers Cove Meteorological Station (EXEM), located in Taylor Valley (Latitude: -77.588733, Longitude: 163.417523, Elevation: 25 meters above sea level). EXEM was acquired from USGS in 1997, during the 97/98 field season.
DOI: 10.6084/m9.figshare.23648973
title: <strong>Table VI</strong>. Results Summary for Mode A Measurement Models (reassessment)

description: Summary of the result reassessment for Mode A Measurement Models.
DOI: 10.6084/m9.figshare.23648973.v1
title: <strong>Table VI</strong>. Results Summary for Mode A Measurement Models (reassessment)

description: Summary of the result reassessment for Mode A Measurement Models.
DOI: 10.5281/zenodo.8126899
title: Tunable nonlinear optical mapping in a multiple-scattering cavity - Data set

description: Data set for "Tunable nonlinear optical mapping in a multiple-scattering cavity article"
DOI: 10.5281/zenodo.8126898
title: Tunable nonlinear optical mapping in a multiple-scattering cavity - Data set

description: Data set for "Tunable nonlinear optical mapping in a multiple-scattering cavity article"
DOI: 10.6084/m9.figshare.23649429
title: <strong>Table VII</strong>. Discriminant validity_heterotrait–monotrait ratio (reassessment)

description: Summary of the result reassessment for Discriminant validity (HTMT ratio).
DOI: 10.6084/m9.figshare.23649429.v1
title: <strong>Table VII</strong>. Discriminant validity_heterotrait–monotrait ratio (reassessment)

description: Summary of the result reassessment for Discriminant validity (HTMT ratio).
DOI: 10.21227/y4ek-d516
title: Smartwatch heart rate data

description:  The dataset is digital health data. It contains heart rate data extracted from Fitbit version 2 smartwatch worn by a healthy male Asian person of 48 years old. Data is of one-month duration. We have uploaded a zip file that contains data from different days. Data for each day has a separate file. The file name contains the date. Each file is in csv format. Each file has two columns – timestamp and heart rate. It is a continuous time-series heart rate data. Heart rate was recorded seamlessly at 5 sec interval. However, there may be missing datum. It will be helpful for the researchers for several downstream analyses.
DOI: 10.6084/m9.figshare.23649753
title: <strong>Table VIII</strong>. Significance and relevance of outer weights and outer loadings (reassessment)

description: Summary of the result reassessment for significance and relevance of outer weights and outer loadings.
DOI: 10.6084/m9.figshare.23649753.v1
title: <strong>Table VIII</strong>. Significance and relevance of outer weights and outer loadings (reassessment)

description: Summary of the result reassessment for significance and relevance of outer weights and outer loadings.
DOI: 10.25345/c5qz22t20
title: MassIVE MSV000092381 - Palaeoproteomics and microanalysis reveal techniques of production of animal based metal threads in medieval textiles_Leather part I
title: Protein-based or animal-based metal threads were largely used between the 10th and the 15th centuries, in European, Middle Eastern and Far Eastern textile productions for the decoration of textiles and cloths to make a display of wealth, power and status. A total of 94 samples were collected from a corpus of 67 textile fragments belonging to 53 catalogued objects. Proteomics analysis allowed to determine the origin of the animal substrates, which were found to be from bovine membranes (possibly from gastrointestinal organs or bladder) in membrane strips, while in leather strips (possibly made from the corium or grain skin layer of the animals), goat (exclusively in Spanish samples) and sheep (in Middle Eastern/Italian and Far Eastern samples) were identified. Other protein-based components that made the strips were identified and associated to the adhesive binders.
DOI: 10.6084/m9.figshare.23649759
title: <strong>Table IX</strong>. Significance Testing Results of the Structural Model Path Coefficients

description: Significance Testing Results of the Structural Model Path Coefficients (MSB.IS HCM model with second-order composite, HOC)
DOI: 10.6084/m9.figshare.23649759.v1
title: <strong>Table IX</strong>. Significance Testing Results of the Structural Model Path Coefficients

description: Significance Testing Results of the Structural Model Path Coefficients (MSB.IS HCM model with second-order composite, HOC)
DOI: 10.6084/m9.figshare.18858155
title: Evaluation of the cvfreq: novel index for the degree of frequency modulation of each syllable using USVSEG

description: We developed a novel index for the degree of frequency modulation of each syllable, named the cvfreq. The cvfreq is a coefficient of variation for the frequency of each syllable. The new version (ver. 9, revision 2) of USVSEG we previously developed (Tachibana et al., 2020 PLOS ONE https://doi.org/10.1371/journal.pone.0228907), which is a detection and segmentation system for USVs, outputs the values of the cvfreq. Here, we uploaded the dataset and stats information as supplemental information for the review process.<br>[Files]usvseg09r2.m: program file of USVSEG (MATLA) used in this study<br>usvseg_prm.mat: setting file<br>cvfreqStatsSum.csv: dataset<br>cvfreq_eval.R: R scripts for stats<br>StatSum_sFigs2-3.pdf: stats summary (modified R Markdown documents) <br>
DOI: 10.6084/m9.figshare.18858155.v1
title: Evaluation of the cvfreq: novel index for the degree of frequency modulation of each syllable using USVSEG

description: We developed a novel index for the degree of frequency modulation of each syllable, named the cvfreq. The cvfreq is a coefficient of variation for the frequency of each syllable. The new version (ver. 9, revision 2) of USVSEG we previously developed (Tachibana et al., 2020 PLOS ONE https://doi.org/10.1371/journal.pone.0228907), which is a detection and segmentation system for USVs, outputs the values of the cvfreq. Here, we uploaded the dataset and stats information as supplemental information for the review process.<br>[Files]usvseg09r2.m: program file of USVSEG (MATLA) used in this study<br>usvseg_prm.mat: setting file<br>cvfreqStatsSum.csv: dataset<br>cvfreq_eval.R: R scripts for stats<br>StatSum_sFigs2-3.pdf: stats summary (modified R Markdown documents) <br>
DOI: 10.25345/c5m61c08z
title: MassIVE MSV000092382 - Palaeoproteomics and microanalysis reveal techniques of production of animal based metal threads in medieval textiles_Leather part II
title: Protein-based or animal-based metal threads were largely used between the 10th and the 15th centuries, in European, Middle Eastern and Far Eastern textile productions for the decoration of textiles and cloths to make a display of wealth, power and status. A total of 94 samples were collected from a corpus of 67 textile fragments belonging to 53 catalogued objects. Proteomics analysis allowed to determine the origin of the animal substrates, which were found to be from bovine membranes (possibly from gastrointestinal organs or bladder) in membrane strips, while in leather strips (possibly made from the corium or grain skin layer of the animals), goat (exclusively in Spanish samples) and sheep (in Middle Eastern/Italian and Far Eastern samples) were identified. Other protein-based components that made the strips were identified and associated to the adhesive binders.
DOI: 10.6073/pasta/a901d72b09af8196d408390c7c1809b9
title: Monthly measurement summaries from Miers Valley Meteorological Station (MISM), McMurdo Dry Valleys, Antarctica (2012-2022, ongoing)

description: As part of the McMurdo Dry Valleys Long Term Ecological Research program, meteorological data are collected from various locations throughout the McMurdo Dry Valleys of Antarctica. This data package contains monthly measurement summaries derived from 15-minute data generated by the Miers Valley Meteorological Station (MISM), located in Miers Valley.
DOI: 10.5281/zenodo.8126962
title: An ontology for defining and characterizing Demonstration Environments

description: Demonstration Environments (DE) refer to all facilities and environments for technology development including testing, prototyping and confronting technology with different usage situations (e.g. testbed, pilot plant, living lab, sandbox, etc.). This DE Ontology is proposed to define, conceptualise and characterise DEs from various perspectives including their application domains, characteristics, network components and measurable values like lifespan. It enables different types of DEs to be situated on the same level for comparison and benchmarking. It also provides a standardisation of terminologies related to DEs which solves heterogeneity in the description of various names of DEs across domains, and provides a common understanding of DEs through a systematic framework which is the ontology.
DOI: 10.5281/zenodo.8126961
title: An ontology for defining and characterizing Demonstration Environments

description: Demonstration Environments (DE) refer to all facilities and environments for technology development including testing, prototyping and confronting technology with different usage situations (e.g. testbed, pilot plant, living lab, sandbox, etc.). This DE Ontology is proposed to define, conceptualise and characterise DEs from various perspectives including their application domains, characteristics, network components and measurable values like lifespan. It enables different types of DEs to be situated on the same level for comparison and benchmarking. It also provides a standardisation of terminologies related to DEs which solves heterogeneity in the description of various names of DEs across domains, and provides a common understanding of DEs through a systematic framework which is the ontology.