cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12515545
title: Generic residue numbering of the GAIN domain of adhesion GPCRs

description: The dataset corresponding to the publication:



Generic residue numbering of the GAIN domain of adhesion GPCRs



Florian Seufert, Guillermo Pérez-Hernández, Gáspár Pándy-Szekeres, Ramon Guixà-González, Tobias Langenhan, David E. Gloriam, Peter W. Hildebrand

ReasearchSquare

https://doi.org/10.21203/rs.3.rs-4761600/v1




The archive consists of three files:



gaingrn_data.tgz


Contains the underlying data and object structures for the GAIN-GRN creation process and the python package availabe in https://github.com/FloSeu/GAIN-GRN. This can be downloaded manually and extracted in the respective GAIN-GRN/ directory or automatically retrieved via a dedicated function



agpcr_gains.tgz


Contains the best (rank 1) PDB model of the ColabFold/AlphaFold2 workflow for each adhesion GPCR GAIN domain, named by its UniProt accession number.



pkd_gains.tgz


Contains the best (rank 1) PDB model of the ColabFold/AlphaFold2 workflow for each polycystic kidney disease (PKD1) / PKD1-like 1 protein (PKD1L1) GAIN domain, named by its UniProt accession number.
DOI: 10.5281/zenodo.13850863
title: Mycotoxin levels in plant-based meat and dairy alternatives

description: A dataset containing occurrence data for mycotoxins in plant-based meat and dairy alternatives (PBMA & PBDA) obtained from the EU market. Data were obtained from scientific literature in a systematic review.
DOI: 10.15468/dl.53rp82
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caranx trachurus (Linnaeus, 1758)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022583-241126133413365/datasets/export for details.
DOI: 10.23668/psycharchives.8133
title: Datasets for: Motivational consequences of counterfactual mindsets: Does counterfactual structure influence the use of conservative or risky tactics?

description: Datasets for: Winter, K. & Epstude, K. (2022). Motivational consequences of counterfactual mindsets: Does counterfactual structure influence the use of conservative or risky tactics? Motivation and Emotion. https://doi.org/10.1007/s11031-022-09979-6
description: Motivational states are important determinants of human behavior. Regulatory focus theory suggests that a promotion focus stimulates risky behavior, whereas a prevention focus fosters conservative tactics. Previous research linked counterfactual structure with regulatory focus. Extending this work, we predicted that additive counterfactual mindsets (“If only I had…”) instigate risky tactics in subsequent situations, whereas subtractive counterfactual mindsets (“If only I had NOT…”) lead to conservative tactics. We tested this prediction and the underlying assumptions in four preregistered studies (total N = 803) and obtained consistent null results. Additive and subtractive counterfactual mindsets did not elicit different tactics – neither on behavioral nor on self-report measures – and they did not influence participants’ motivation compared to a neutral control condition. Likewise, our results put doubts on previous findings on counterfactuals and regulatory focus as well as regulatory focus and conservative or risky behavior. More general implications for research on counterfactuals and motivation are discussed.
DOI: 10.15468/dl.c7b7yc
title: Occurrence Download

description: A dataset containing 354 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pronotogrammus martinicensis (Guichenot, 1868)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 354 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022584-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23668/psycharchives.8137
title: Datasets for project: "How to debunk health-related misinformation? An experimental online study of text structures and headline formats"

description: Datasets, project "How to debunk health-related misinformation? An experimental online study of text structures and headline formats", preregistered as König, L. M., Kotz, J., & Giese, H. (2022). How to debunk health-related misinformation? An experimental online study of text structures and headline formats. PsychArchives. https://doi.org/10.23668/psycharchives.5373
DOI: 10.23668/psycharchives.8138
title: Datasets and codebook for: Effects of Daily Affective Experiences on Boundary Management Preferences – A Daily Diary Study.

description: Datasets and codebook for: Mueller, N., Loeffelsend, S., and Kempen, R. (2022). Effects of Daily Affective Experiences on Boundary Management Preferences – A Daily Diary Study. PsychArchives. https://doi.org/10.23668/psycharchives.5398.
DOI: 10.23668/psycharchives.8139
title: Datasets and codebook for: Effects of Daily Strain on Boundary Management Preference and Enactment – A Daily Diary Study.

description: Introduction: Transformations in the work–nonwork interface highlight the importance of effectively managing the boundaries between life domains. However, do the ways individuals manage the boundaries between work and nonwork life change from one day to the next? If so, which antecedents may explain these intra-individual fluctuations in boundary management? Drawing on boundary management, spillover, and resource theories, we investigate daily changes in segmentation preferences and integration enactments as a function of experiencing strain in work and nonwork life. Assuming that changes in segmentation preferences reflect an individual’s strategy to regulate negative cross-role spillover, we suppose that strain increases individuals’ segmentation preferences; at the same time, however, it could force individuals to enact more integration. Methods: We test our assumptions with data from two studies with different methodological approaches. The first study uses a daily diary research design (Study 1, 425 participants with 3,238 daily observations) in which full-time professionals rated strain in work and nonwork life, segmentation preferences, and integration enactments every evening for 10 workdays. The second study uses an experimental vignette research design (Study 2, 181 participants), where we experimentally manipulated strain in work and nonwork life and investigated causal effects on participants’ hypothetical segmentation preferences. Results: The results of multilevel modeling analyses in Study 1 show that segmentation preferences and integration enactments fluctuate from day to day as a function of strain. More specifically, strain is related to preferring more segmentation but enacting more integration. Study 2 replicates the results of Study 1, showing that strain causally affects segmentation preferences. Discussion: This two-study paper is one of the first to address daily fluctuations in segmentation preferences and integration enactments, extending our knowledge of temporal dynamics in boundary management. Furthermore, it demonstrates that strain is an antecedent of these daily fluctuations, offering starting points for practical interventions.
description: Dataset for: Mueller, N., Loeffelsend, S., Vater, E., & Kempen, R. (2023). Effects of strain on boundary management: findings from a daily diary study and an experimental vignette study. Frontiers in Psychology, 14. https://doi.org/10.3389/fpsyg.2023.1149969
DOI: 10.23668/psycharchives.8144
title: Dataset for: Between-task interference during the task resumption process: Examining the role of residual inhibition of the interrupted task

description: Dataset for: Hirsch, P., Moretti, L., Askin, S., & Koch, I. (in preparation). Between-task interference during the task resumption process: Examining the role of residual inhibition of the interrupted task
DOI: 10.15468/dl.92bb6k
title: Occurrence Download

description: A dataset containing 464 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conger myriaster (Brevoort, 1856)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 464 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022586-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27925131
title: Religion Centres in Catalonia 2020-22 (by municipalities)

description: The Religious Map of Catalonia collects, with data from 2020 to 2022, the figures at the municipal and regional level on the places where worship is usually held relating to the different religious denominations established in the country. The study counts a total of 7,291 centres throughout Catalonia, mainly corresponding to 14 religious denominations.<br>The initiative began in 2001, when the then Secretariat for Relations with Religious Confessions of the Generalitat de Catalunya (now the General Directorate of Religious Affairs) commissioned the research group ISOR -Research in the Sociology of Religion, of the Autonomous University of Barcelona, to design a map of religious minorities. Since then, several updates have been carried out to obtain information on all the places of worship that are active in Catalonia. The data referring to the Catholic Church are provided by the dioceses based in Catalonia. In 2022, the last update of the Religious Map of Catalonia was carried out, which was carried out by the Pere Tarrés Foundation.<br>The information on the Religious Map is specified in a study that incorporates, on the one hand, quantitative information with the collection of specific data on each religious centre established in Catalonia, and, on the other, qualitative information collected from interviews with representatives of religious denominations, centres of worship, organisations and religious entities. All this with the aim of getting to know in depth the religious communities present in Catalonia and offering a rigorous portrait of the religious situation in Catalonia.Each row correspond to a centre and the columns in the dataset are the following:1- Name of the centre2- Religion3- Organization4- Municipality5- Municipality code6- Region7- Region code8- Province9- Province code10- Year of the data<br><b>Source:</b> Mapa religiós de Catalunya. Afers Religiosos
DOI: 10.15468/dl.csvr72
title: Occurrence Download

description: A dataset containing 52153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.8933 7.57802,-76.55422 7.50818,-76.4392 8.07921,-76.78347 8.16242,-76.8933 7.57802))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 52153 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022585-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27925131.v2
title: Religion Centres in Catalonia (by municipalities)

description: The Religious Map of Catalonia collects, with data from 2022, the figures at the municipal and regional level on the places where worship is usually held relating to the different religious denominations established in the country. The study counts a total of 7,291 centres throughout Catalonia, mainly corresponding to 14 religious denominations.<br>The initiative began in 2001, when the then Secretariat for Relations with Religious Confessions of the Generalitat de Catalunya (now the General Directorate of Religious Affairs) commissioned the research group ISOR -Research in the Sociology of Religion, of the Autonomous University of Barcelona, to design a map of religious minorities. Since then, several updates have been carried out to obtain information on all the places of worship that are active in Catalonia. The data referring to the Catholic Church are provided by the dioceses based in Catalonia. In 2022, the last update of the Religious Map of Catalonia was carried out, which was carried out by the Pere Tarrés Foundation.<br>The information on the Religious Map is specified in a study that incorporates, on the one hand, quantitative information with the collection of specific data on each religious centre established in Catalonia, and, on the other, qualitative information collected from interviews with representatives of religious denominations, centres of worship, organisations and religious entities. All this with the aim of getting to know in depth the religious communities present in Catalonia and offering a rigorous portrait of the religious situation in Catalonia.Each row correspond to a centre and the columns in the dataset are the following:1- Name of the centre2- Religion3- Organization4- Municipality5- Municipality code6- Region7- Region code8- Province9- Province code10- Year of the data<br><b>Source:</b> Mapa religiós de Catalunya. Afers Religiosos
DOI: 10.5281/zenodo.10405655
title: Supplementary material for: "Seeds adapted to mixed cropping increase yield and drought resistance of cereal-legume mixtures"

description: Supplementary material for the research article: "Seeds adapted to mixed cropping increase yield and drought resistance of cereal-legume mixtures".



Raw data

R analysis code

ANOVA tables and statistical analysis info


 

Abstract:

Cropland diversification through mixed cropping has the potential of achieving a more sustainable agriculture while securing food production. This is of special relevance with climate change and the expected drier growing conditions in the future. Seed adaptation to this cropping method is hypothesised to be a fundamental factor to maximise these benefits, as well as the particular species combined. In this study we compared the performance of four cereal-legume mixed crops (wheat and oat mixed with lupin and lentil in pairs) with their respective monocrops. Each crop was sown using seeds adapted to monoculture and mixed cropping, respectively. Moreover, they were grown under early-season and late-season drought treatments and under control conditions. We measured above-ground vegetative biomass, seed yield and harvest index to evaluate crop production, drought resistance and the effect of seed adaptation on each mixed and monocrop. Our results show that mixed cropping either had a beneficial or neutral effect on crop yield, depending on the species combination and drought conditions, but harvest index was generally higher in monocrops. We also confirmed that seed adaptation to a particular type of cropping is clearly a determining factor in its performance. In accordance with the insurance hypothesis, mixed cropping has the effect of protecting crop yields in the case of a sudden bad performance of one of the species, for example, caused by adverse environmental conditions. It is necessary to focus on effective species combinations which have the best responses to mixed cropping. We show for the first time that wheat-lentil mixtures performed poorly, while wheat-lupin showed the most promising results improving yield and drought resistance. Oat mixed crops did not show differences with the respective monocrops, so they can be a viable cropping option as well and benefit from advantages of crop diversity not measured in this study.
DOI: 10.5281/zenodo.10405654
title: Supplementary material for: "Seeds adapted to mixed cropping increase yield and drought resistance of cereal-legume mixtures"

description: Supplementary material for the research article: "Seeds adapted to mixed cropping increase yield and drought resistance of cereal-legume mixtures".



Raw data

R analysis code

Statistical analysis info: ANOVA and Tukey comparisons tables


 

Abstract:

Cropland diversification through mixed cropping has the potential of achieving a more sustainable agriculture while securing food production. This is of special relevance with climate change and the expected drier growing conditions in the future. Seed adaptation to this cropping method is hypothesised to be a fundamental factor to maximise these benefits, as well as the particular species combined. In this study we compared the performance of four cereal-legume mixed crops (wheat and oat mixed with lupin and lentil in pairs) with their respective monocrops. Each crop was sown using seeds adapted to monoculture and mixed cropping, respectively. Moreover, they were grown under early-season and late-season drought treatments and under control conditions. We measured above-ground vegetative biomass, seed yield and harvest index to evaluate crop production, drought resistance and the effect of seed adaptation on each mixed and monocrop. Our results show that mixed cropping either had a beneficial or neutral effect on crop yield, depending on the species combination and drought conditions, but harvest index was generally higher in monocrops. We also confirmed that seed adaptation to a particular type of cropping is clearly a determining factor in its performance. In accordance with the insurance hypothesis, mixed cropping has the effect of protecting crop yields in the case of a sudden bad performance of one of the species, for example, caused by adverse environmental conditions. It is necessary to focus on effective species combinations which have the best responses to mixed cropping. We show for the first time that wheat-lentil mixtures performed poorly, while wheat-lupin showed the most promising results improving yield and drought resistance. Oat mixed crops did not show differences with the respective monocrops, so they can be a viable cropping option as well and benefit from advantages of crop diversity not measured in this study.
DOI: 10.5281/zenodo.14288707
title: Supplementary material for: "Seeds adapted to mixed cropping increase yield and drought resistance of cereal-legume mixtures"

description: Supplementary material for the research article: "Seeds adapted to mixed cropping increase yield and drought resistance of cereal-legume mixtures".



Raw data

R analysis code

Statistical analysis info: ANOVA and Tukey comparisons tables


 

Abstract:

Cropland diversification through mixed cropping has the potential of achieving a more sustainable agriculture while securing food production. This is of special relevance with climate change and the expected drier growing conditions in the future. Seed adaptation to this cropping method is hypothesised to be a fundamental factor to maximise these benefits, as well as the particular species combined. In this study we compared the performance of four cereal-legume mixed crops (wheat and oat mixed with lupin and lentil in pairs) with their respective monocrops. Each crop was sown using seeds adapted to monoculture and mixed cropping, respectively. Moreover, they were grown under early-season and late-season drought treatments and under control conditions. We measured above-ground vegetative biomass, seed yield and harvest index to evaluate crop production, drought resistance and the effect of seed adaptation on each mixed and monocrop. Our results show that mixed cropping either had a beneficial or neutral effect on crop yield, depending on the species combination and drought conditions, but harvest index was generally higher in monocrops. We also confirmed that seed adaptation to a particular type of cropping is clearly a determining factor in its performance. In accordance with the insurance hypothesis, mixed cropping has the effect of protecting crop yields in the case of a sudden bad performance of one of the species, for example, caused by adverse environmental conditions. It is necessary to focus on effective species combinations which have the best responses to mixed cropping. We show for the first time that wheat-lentil mixtures performed poorly, while wheat-lupin showed the most promising results improving yield and drought resistance. Oat mixed crops did not show differences with the respective monocrops, so they can be a viable cropping option as well and benefit from advantages of crop diversity not measured in this study.
DOI: 10.5281/zenodo.14288745
title: cachryx_defensor_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.14288746
title: cachryx_defensor_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.14278069
title: Monthly crop water use simulated with the Global Crop Water Model (GCWM) at global scale for 26 crop types

description: Monthly crop water use simulated for period 1981-2021

Description of the dataset

The dataset provides monthly crop water uses for 26 crop types and period 1981-2021 simulated at 5 arc-minute resolution using the Global Crop Water Model GCWM (Siebert and Döll, 2010; Meza et al., 2021) distinguishing irrigation water use (blue water) and use of precipitation water stored in the soil (green water). Water uses are provided for 26 irrigated and rainfed crops in m³. 

GCWM simulates for each crop a daily soil water balance to estimate evapotranspiration and runoff. Evapotranspiration is calculated according to the Penman-Monteith approach as implemeted in the FAO Irrigation and Drainage Paper 56 (Allen et al., 1998) using ERA5 global reanalysis data (Hersbach et al., 2020; Copernicus Climate Change Service, Climate Data Store, 2023) as climate input. The original hourly ERA5 data were first aggregated to daily data and then disaggregated from 15 arc-minute resolution to 5 arc-minute resolution by using a digital elevation modell and assuming a temperature difference of 0.65 K per 100 m altitude difference. The land use is according to the MIRCA2000 dataset (Portmann et al., 2010) distinguishing 26 irrigated and rainfed crop types. Specific sub-crop classes were used to account for multiple cropping (e.g. different growing seasons of rice) or different growing seasons of temperate cerelas (e.g. spring barley and winter barley). Consequently, the model setup is considering climate variability and climate change but assumes a static land use centered around year 2000. The green water use of irrigated and rainfed crops is the amount of water evapotranspirated under rainfed conditions reflecting the impact of drought on actual evapotranspiration. Blue water use of irrigated crops is the amount of water that would be needed to maintain potential evapotranspiration of irrigated crops. 

Technical specifications

The data available for download consist of ascii-grids at global extent and 5 arc-minute resolution (4320 columns x 2160 rows) with a header of 6 lines. For each of the 26 crops a separate zip-archive is provided to reduce the size of the single files. In total, 1476 ascii-grids are provided for each crop (41 years x 12 months x 3 water use types). Three water use types are distinguished: blue water use of irrigated crops, green water use of irrigated crops and green water use of rainfed crops. When a crop is not growing in a specific grid cell or month, water use will be 0. Water uses are reported in m³ per grid cell. To convert water uses from m³ per grid cell to mm per grid cell please use the ascii-grid containg the cell area of the grid cells in ha and the following equation:

Water use (mm) = 0.1 * Water use (m³) / Cell area (ha).

More details with regard to file names and crop types are provided in the readme file available in the download section.