cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3mabcb
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Vicatia thibetica H.Boissieu"
 ]
}

 The dataset includes 107 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066795-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15726842
title: Optimizing the input for automated SNOMED CT mapping of clinical variables - Dataset and Evaluation

description: In this work, we investigated the effect of variable name (VN) formulation and descriptiveness on the accuracy and efficiency of their mapping to medical terminology “Systematized Nomenclature of Medicine Clinical Terms” (SNOMED CT) with the “Medical Concept Annotation Toolkit” (MedCAT). We extracted 763 VNs from the German registry of paediatric deep brain stimulation in patients with childhood-onset dystonia (GEPESTIM) hosted locally with “Research electronic data capture” (REDCap). Subseqeuntly, we created three VN versions using different REDCap metadata items for MedCAT-based SNOMED CT mapping. The metadata items comprise the REDCap end-user label (EUL), form name (FN) and Branching logic (BL). A fourth VN version was created manually. The input creation can be traced in file "MedCAT_input.csv". The mapping was evaluated by two evaluators based on the number and quality of identified SNOMED CT concepts, using manual scoring from -3 to +3 to assess concept accuracy while ensuring a blind evaluation process. A score of 0 means that no content-carrying concepts were mapped, while negative scores indicate the mapping of incorrect concepts. The higher the proportion of incorrect concepts, the lower the score. Positive Scores were assigned if only correct concepts were mapped. The score increases with increasing completeness of medical concept coverage. If the opposite of the correct concepts was mapped, we assigned a score of -2. The MedCAT Output annotated by our evaluations can be found in files "*_Concept_Mapping_Evaluation.csv".

 

Overview



MedCAT_input.csv - REDCap metadata plus VN versions created based on that data

baseline_Concept_Mapping_Evaluation.csv - MedCAT output on VN version "baseline" annotated with evaluations

manual_Concept_Mapping_Evaluation.csv - MedCAT output on VN version "manual" annotated with evaluations

withFormName_Concept_Mapping_Evaluation.csv - MedCAT output on VN version "withFormName" annotated with evaluations

withFormNameAndBL_Concept_Mapping_Evaluation.csv - MedCAT output on VN version "withFormNameAndBL" annotated with evaluations
DOI: 10.5281/zenodo.15726843
title: Optimizing the input for automated SNOMED CT mapping of clinical variables - Dataset and Evaluation

description: In this work, we investigated the effect of variable name (VN) formulation and descriptiveness on the accuracy and efficiency of their mapping to medical terminology “Systematized Nomenclature of Medicine Clinical Terms” (SNOMED CT) with the “Medical Concept Annotation Toolkit” (MedCAT). We extracted 763 VNs from the German registry of paediatric deep brain stimulation in patients with childhood-onset dystonia (GEPESTIM) hosted locally with “Research electronic data capture” (REDCap). Subseqeuntly, we created three VN versions using different REDCap metadata items for MedCAT-based SNOMED CT mapping. The metadata items comprise the REDCap end-user label (EUL), form name (FN) and Branching logic (BL). A fourth VN version was created manually. The input creation can be traced in file "MedCAT_input.csv". The mapping was evaluated by two evaluators based on the number and quality of identified SNOMED CT concepts, using manual scoring from -3 to +3 to assess concept accuracy while ensuring a blind evaluation process. A score of 0 means that no content-carrying concepts were mapped, while negative scores indicate the mapping of incorrect concepts. The higher the proportion of incorrect concepts, the lower the score. Positive Scores were assigned if only correct concepts were mapped. The score increases with increasing completeness of medical concept coverage. If the opposite of the correct concepts was mapped, we assigned a score of -2. The MedCAT Output annotated by our evaluations can be found in files "*_Concept_Mapping_Evaluation.csv".

 

Overview



MedCAT_input.csv - REDCap metadata plus VN versions created based on that data

baseline_Concept_Mapping_Evaluation.csv - MedCAT output on VN version "baseline" annotated with evaluations

manual_Concept_Mapping_Evaluation.csv - MedCAT output on VN version "manual" annotated with evaluations

withFormName_Concept_Mapping_Evaluation.csv - MedCAT output on VN version "withFormName" annotated with evaluations

withFormNameAndBL_Concept_Mapping_Evaluation.csv - MedCAT output on VN version "withFormNameAndBL" annotated with evaluations
DOI: 10.5281/zenodo.15727162
title: Köln-Merheim Grüne Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.15727163
title: Köln-Merheim Grüne Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.15468/dl.mf93ym
title: Occurrence Download

description: A dataset containing 2316 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glyptostrobus Endl."
 ]
}

 The dataset includes 2316 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066801-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k9q7r5
title: Occurrence Download

description: A dataset containing 80217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Suthora davidiana H.H.Slater, 1897, Pterorhinus chinensis (Scopoli, 1786), Oroanassa magnifica (Ogilvie Grant, 1899), Icthyophaga leucogaster (J.F.Gmelin, 1788))",
 "Year 1995-2025"
 ]
}

 The dataset includes 80217 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066787-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15727176
title: Köln-Mülheim Adler-Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.15727177
title: Köln-Mülheim Adler-Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.15468/dl.u7qwxu
title: Occurrence Download

description: A dataset containing 111979165 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Observation.org, Nature data from around the World"
 ]
}

 The dataset includes 111979165 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066767-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5bc3t910
title: MassIVE MSV000098297 - Unraveling Metabolic Alterations in Avian Influenza Exposed Individuals A Non Targeted Metabolomics Approach
title: Avian influenza poses a continuous public health threat, particularly to individuals with occupational exposure to poultry such as farm workers, live animal market employees, and processing plant staff. To investigate the systemic metabolic effects of such exposure, we applied an untargeted liquid chromatography mass spectrometry (LC MS) based metabolomics approach to analyze serum samples from occupationally exposed individuals and healthy controls. Multivariate statistical analysis revealed clear separation between the two groups, with stable clustering of quality control samples indicating high analytical reproducibility. Pathway enrichment and topology analyses identified several significantly altered metabolic pathways in the exposed group, most notably alanine, aspartate and glutamate metabolism and tryptophan metabolism, both of which are closely linked to immune regulation, energy metabolism, and host-pathogen interactions. In addition, lipidomic profiling revealed a pronounced increase in lysophosphatidylcholine (LPC) levels and a concurrent decrease in phosphatidylcholine (PC) species in exposed individuals, suggesting inflammation-associated lipid remodeling. These findings provide novel insights into the metabolic disruptions associated with avian influenza exposure and highlight potential serum biomarkers for early detection and health risk assessment in high risk occupational populations.
DOI: 10.5281/zenodo.15727197
title: Köln-Mülheim Bahnhof-Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.15727198
title: Köln-Mülheim Bahnhof-Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.6084/m9.figshare.29383145.v4
title: E-MTAB-7127_rabbit_H3K27ac

description: First track taken from https://www.ebi.ac.uk/biostudies/ArrayExpress/studies/E-MTAB-7127/sdrf?full=true, including the index.
DOI: 10.5281/zenodo.15726782
title: GUGULU
DOI: 10.5281/zenodo.15726783
title: GUGULU
DOI: 10.5281/zenodo.15727209
title: Köln-Mülheim Einhorn-Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.15727208
title: Köln-Mülheim Einhorn-Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.15468/dl.7jdgsk
title: Occurrence Download

description: A dataset containing 279263 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Brachypalpoides lenta Meigen, 1822, Brachypalpus valgus (Panzer, 1797), Cheilosia himantopus (Panzer, 1797), Cheilosia flavicornis (Fabricius, 1781), Cheilosia corydon (Harris, 1780), Cheilosia rufimanus (Becker, 1894), Cheilosia ruffipes (Preyssler, 1793), Cheilosia ruralis (Meigen, 1822), Chrysotoxum bicincta (Linnaeus, 1758), Eristalis abusivus Collin, 1931, Dasysyrphus venustus (Meigen, 1822), Epistrophella euchromus (Kowarz, 1885), Cheilosia morio (Zetterstedt, 1838), Eristalis rupium Fabricius, 1805, Eristalis obscura Loew, 1866, Eristalis pertinax (Scopoli, 1763), Eurimyia lineatus (Fabricius, 1787), Fagisyrphus cincta (Fallén, 1817), Helophilus affinis Wahlberg, 1844, Chrysogaster aerosa Loew, 1843, Chrysogaster hirtella Loew, 1843, Chrysogaster lucida (Scopoli, 1763), Megasyrphus erratica (Linnaeus, 1758), Melangyna sexguttata (Meigen, 1835), Melanostoma mellina (Linnaeus, 1758), Merodon avidus (Rossi, 1790), Merodon ruficornis Meigen, 1822, Chamaesyrphus lugubris (Perris, 1839), Pipiza festiva Meigen, 1822, Pipizella maculipennis (Meigen, 1822), Platycheirus ambiguum (Fallén, 1817), Platycheirus ciliger Loew, 1856, Orthonevra splendens (Meigen, 1822), Scaeva dignota Rondani, 1857, Sphaerophoria loewii Zetterstedt, 1843, Sphaerophoria philantha (Meigen, 1822), Sphaerophoria rueppellii (Wiedemann, 1830), Spilomyia manicata (Rondani, 1865), Philhelius citrofasciata (De Geer, 1776), Philhelius dives Rondani, 1857, Philhelius laetus (Fabricius, 1794), Philhelius pedissequum (Harris, 1778), Philhelius stackelbergi (Violovich, 1975), Anasimyia interpunctus (Harris, 1778), Eurimyia lineatus (Fabricius, 1787), Anasimyia lunulatus (Meigen, 1822))",
 "Geometry POLYGON((-19.5 34.1, 27.8 34.1, 35.9 68.1, -25.3 68.1, -19.5 34.1))",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Human Observation)",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2008"
 ]
}

 The dataset includes 279263 records from 441 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066796-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pvewe4
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Greece",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Linaria chalepensis (L.) Mill."
 ]
}

 The dataset includes 96 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140555-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8jmz5p
title: Occurrence Download

description: A dataset containing 145557 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eucalyptus globulus Labill."
 ]
}

 The dataset includes 145557 records from 266 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140547-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4ijin
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Inventario de Murciélagos Floreña I, Yopal, Casanare"
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004570-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pk5kbx
title: Occurrence Download

description: A dataset containing 133458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chelonia mydas (Linnaeus, 1758)"
 ]
}

 The dataset includes 133458 records from 347 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140553-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e95acb
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TypeStatus is Unspecified type",
 "TypeStatus is Holotype",
 "TypeStatus is Paratype",
 "TypeStatus is Paralectotype",
 "TypeStatus is Lectotype",
 "TypeStatus is Syntype"
 ]
 },
 "TaxonKey is Imantodes A.M.C.Duméril, 1853"
 ]
}

 The dataset includes 44 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004570-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qjdcux
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Rubus amphidasys Focke"
 ]
}

 The dataset includes 230 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140570-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wokw81
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Sweden",
 "Year 1000-1906",
 "TaxonKey is Astarte montagui (Dillwyn, 1817)"
 ]
}

 The dataset includes 24 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004570-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8awj7b
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Rubus yiwuanus W.P.Fang"
 ]
}

 The dataset includes 95 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140559-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.19afme
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asplenium carruthersii Baker"
 ]
}

 The dataset includes 40 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004571-150316153013904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gc79mq
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((95 20,125 20,125 35,95 35,95 20))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is CR",
 "TaxonKey is Andrias davidianus (Blanchard, 1871)",
 "Year 1960-2023"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140569-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4u7zwl
title: Occurrence Download

description: A dataset containing 3302586 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Colombia"
 ]
}

 The dataset includes 3302586 records from 950 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004571-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ubt2eq
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((95 20,125 20,125 35,95 35,95 20))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Batrachuperus pinchonii (David, 1872)",
 "Year 1960-2023"
 ]
}

 The dataset includes 50 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140563-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.