cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.vv107/1
title: abstractedArchivalComparison_DATA

description: Data used for the comparative analyses of the abstracted transmissions and retrieved archives.  Abstracted transmissions are those variables named "lowRes_" and retrieved archives are those named "highRes_".
DOI: 10.17632/wtxyx9g4jg.1
title: Data for: A successive approximation method to precisely measure leakage current of rechargeable Lithium coin battery

description: excel files for two main figures
DOI: 10.5061/dryad.02c47/9
title: Data_for_Fig7

description: Data used to generate Fig. 7.
DOI: 10.5061/dryad.07668/2
title: APPENDICES

description: Appendix 1, complete list of the ostracods species occurring in the Anisian, Middle Triassic of North Dobrogea, Romania (Mirăuță et al. 1993; Crasquin-Soleau & Grădinaru 1996; Sebe 2013; Sebe et al. 2013; this work).; appendix 2, matrix of ostracod species distribution during the Anisian, Middle Triassic; appendix 3, matrix of ostracod genera distribution during the Anisian, Middle Triassic.
DOI: 10.5061/dryad.12751/41
title: Appendix Figure 31

description: The Data (an Origin file) used for Appendix Figure 31
DOI: 10.5061/dryad.12751/42
title: Appendix Figure 33

description: The Data (an Origin file) used for Appendix Figure 33
DOI: 10.5061/dryad.12751/43
title: Appendix Figure 34

description: The Data (an Origin file) used for Appendix Figure 34
DOI: 10.5061/dryad.12751/44
title: Appendix Figure 35

description: The Data (an Origin file) used for Appendix Figure 35
DOI: 10.5061/dryad.12751/45
title: Appendix Figure 36

description: The Data (an Origin file) used for Appendix Figure 36
DOI: 10.5061/dryad.12751/46
title: Appendix Figure 37

description: The Data (an Origin file) used for Appendix Figure 37
DOI: 10.5061/dryad.12751/47
title: Appendix Figure 38

description: The Data (an Origin file) used for Appendix Figure 38
DOI: 10.5061/dryad.12751/48
title: Appendix Figure 39

description: The Data (an Origin file) used for Appendix Figure 39
DOI: 10.5061/dryad.12751/49
title: Appendix Figure 40

description: The Data (an Origin file) used for Appendix Figure 40
DOI: 10.5061/dryad.14j2m.3/2.3
title: Supplementary Figure 1

description: Bar plot of the means and standard deviations of the H/L ratios in (A) all of the adult specimens (Welch’s t-test: t = 2.8395, df = 167.56, p-value = 5.1 x 10−3), (B) in morphotype B (Welch’s t-test: t = 1.5646, df = 114.7, p-value = 0.12), (C) in morphotype S (Welch’s t-test: t = 2.9211, df = 52.548, p-value = 5.1 x 10−3), and (D) in juveniles (Welch’s t-test: t = 2.0779, df = 70.788, p-value = 0.041). n indicates the number of valves. The numbers in the bars indicate the mean ± standard deviation.
DOI: 10.5061/dryad.14j2m.3/3.3
title: Supplementary Table 1

description: The datum events of calcareous nannofossil biostratigraphy and carbon isotope stratigraphy (Norris et al. 2014; Yamaguchi et al. submitted). Abbreviations: B = bottom and T = top.
DOI: 10.5061/dryad.2j27b/1
title: Barcodes_Grp1_Mar2016_MEC-17-0128

description: Barcodes associated with Grp1_i12_Mar2016.fastq.gz.
DOI: 10.5061/dryad.2j27b/10
title: i7_barcodes_July2016_MEC-17-0128

description: Barcodes associated with ZBCi7-V1T-1_S48_L006_R1_001.fastq.gz.
DOI: 10.5061/dryad.2j27b/2
title: Barcodes_Grp3_Mar2016_MEC-17-0128

description: Barcodes associated with Grp3_i04_Mar2016.fastq.gz.
DOI: 10.5061/dryad.2j27b/3
title: Barcodes_Grp2_Mar2016_MEC-17-0128

description: Barcodes associated with Grp2_i03_Mar2016.fastq.gz.
DOI: 10.5061/dryad.2j27b/4
title: Barcodes_Grp4_Mar2016_MEC-17-0128

description: Barcodes associated with Grp4_i05_Mar2016.fastq.gz.
DOI: 10.5061/dryad.2j27b/5
title: Barcodes_Grp5_Mar2016_MEC-17-0128

description: Barcodes associated with Grp5_i06_Mar2016.fastq.gz.
DOI: 10.5061/dryad.2j27b/6
title: Barcodes_Grp1_Nov2015_MEC-17-0128

description: Barcodes associated with Grp1_i06_Nov2015.fastq.gz.
DOI: 10.5061/dryad.2j27b/7
title: i4_barcodes_July2016_MEC-17-0128

description: Barcodes associated with ZBCi4-V1T-1_S45_L006_R1_001.fastq.gz.
DOI: 10.5061/dryad.2qk88/1
title: Loci file from pyRAD: c85d6m20p3.full.loci

description: Loci file exported from clustering analysis performed in PyRAD. All molecular datasets referenced in study were exported by first importing this file into R using the RADami package (https://cran.r-project.org/web/packages/RADami/index.html), then subsetting individuals and loci and exporting as a phylip file.
DOI: 10.5061/dryad.2qk88/2
title: Full-taxa Phylip file: allTaxa.c85d6m20p3.2016.12.08.phy

description: The full phylogenetic analysis conducted on all individuals was conducted on this file, exported from RADami after importing the loci file (also in this repository) and removing individuals indicated in the paper.
DOI: 10.5061/dryad.2qk88/3
title: RAxML original tree: bipart.oakTree.2017

description: Tree from RAxML, unrooted, 300 tips, based on analysis of Phylip file in this repository, with RELL bootstrap support.
DOI: 10.5061/dryad.2qk88/4
title: Rooted, relabelled RAxML tree: bipart.oakTree.2017.tre.allTips

description: RAxML tree with all tips, relabelled to indicate taxon, geographic region, and extraction code.
DOI: 10.5061/dryad.2vk03/1
title: individualXtraitsXenv

description: Trait values and environmental conditions at sample collection locations for individual plants. All values are untransformed.
DOI: 10.5061/dryad.2vk03/2
title: plotXspecies_coverXenv

description: Percent cover values for Protea, Pelargonium, Erica, and Restio in vegetation plots. Environmental conditions at plot locations are included. All values are untransformed.
DOI: 10.5061/dryad.45fm6/1
title: Microsatellite loci, mitochondrial sequences and individual coordinates

description: microsatellite loci, mitochondrial sequences and individual coordinates
DOI: 10.5061/dryad.66767/1
title: Peyser_et_al_2017

description: Adult drosophila species survival over 1 hour exposure to octanoic or hexanoic acid survival with and without piperonyl butoxide (PBO)
DOI: 10.5061/dryad.707kc/1
title: Beagle2  Appendix_Search Study details

description: Spreadsheet with details of search and red:blue-green colour characterisation of the lander.
DOI: 10.5061/dryad.707kc/2
title: Beagle 2 lander animated GIF

description: Beagle 2 lander animated GIF from HiRISE images
DOI: 10.5061/dryad.707kc/3
title: Rear Cover candidate animated GIF

description: Rear Cover candidate animated GIF from HiRISE images
DOI: 10.5061/dryad.707kc/4
title: Parachute candidate animated GIF

description: Rear Cover candidate animated GIF from HiRISE images
DOI: 10.5061/dryad.7ft57/1
title: Isomap Assignment Output Files

description: IsoMAP output files in .asc format for each feather. Directory substructure represents species (Audubon's versus myrtle) and is further divided by molt, with "alt" (alternate feather) versus basic (basic feather).
DOI: 10.5061/dryad.7ft57/2
title: Raw hydrogen isotope values and bird measurements
DOI: 10.5061/dryad.7rd7s/1
title: Full_Stand_Stem_Map_Data

description: Tree species, location, health, plant community, and associated environmental data. These data were used to create stem maps of adult trees (&gt; 1.39m in height) in three leading edge yellow-cedar (Callitropsis nootkatensis) stands in our study area near Juneau, Alaska, USA. 
The three stands are the "BCBP: Bridget Cove Beaver Pond", "DM: Dan Moller Trail", and "RS: Roadside" stands shown in Figure 1. These data were also used in Figure 5 to compare the diameter distributions of yellow-cedar trees in the fully stem mapped stands to the yellow-cedar trees in plots located only at the edges of stands.
DOI: 10.5061/dryad.7rd7s/2
title: Plot_Stem_Map_Data

description: Tree and seedling species, location, health, plant community, and associated data for 29 plots spanning boundaries of leading edge yellow-cedar (Callitropsis nootkatensis) stands near Juneau, Alaska. These data were used to create stem maps of adult trees (&gt; 1.39m in height) and individuals of yellow-cedar (Callitropsis nootkatensis) regeneration (seedlings and vegetative layering). Plots were located at stand edges to monitor stand development and spread. 

The eight stands are the "BCBP: Bridget Cove Beaver Pond", "CL: Cedar Lake", "DM: Dan Moller Trail", "EG: East Glacier", "MCT: McMurchie Cat Trail", "RBC: Ready Bullion Creek", "RS: Roadside", and "TH: Tee Harbor Ridge" stands shown in Figure 1.

These data were used in Tables 3 and 4, Figures 3, 4, and 6, Supplemental Table S1, and Supplemental Figure S1.
DOI: 10.5061/dryad.7rd7s/3
title: Juneau_Yellow_Cedar_Stand_Locations

description: These data represent the locations of eleven leading range edge yellow-cedar stands in our Study Area located near Juneau, Alaska, USA. Coordinates here are for the geographic mean center of patches of trees and lone trees (separated from each other by 30 m or more) that make up stands. Geographic Information Systems (GIS) shapefiles for stand boundaries and lone trees are also included on the data archive.

A companion manuscript, Krapek, J., Hennon, P.E., D'Amore, D.V., and Buma, B. "Despite available habitat at range edge, yellow-cedar migration is punctuated with a past pulse tied to colder conditions." Diversity and Distributions, 2017 describes stand mapping methodology in detail.
DOI: 10.5061/dryad.7rd7s/4
title: Juneau_YellowCedar_Stands

description: This is a shapefile containing the location of patches of yellow-cedar trees in yellow-cedar stands in our Juneau Study Area. The geographic coordinates of patches are also listed in the "Juneau_Yellow_Cedar_Stand_Locations.csv" file in this data package and are shown in Figure 1. 

A companion manuscript, Krapek, J., Hennon, P.E., D'Amore, D.V., and Buma, B. "Despite available habitat at range edge, yellow-cedar migration is punctuated with a past pulse tied to colder conditions." Diversity and Distributions, 2017, describes yellow-cedar stand and patch mapping methodology in detail.
DOI: 10.5061/dryad.7rd7s/5
title: Juneau_Lone_YellowCedar_Trees

description: This is a shapefile containing the location of lone yellow-cedar trees in our Juneau Study Area. The geographic coordinates of lone yellow-cedar trees are also listed in the "Juneau_Yellow_Cedar_Stand_Locations.csv" file in this data package and are shown in Figure 1. 

A companion manuscript, Krapek, J., Hennon, P.E., D'Amore, D.V., and Buma, B. "Despite available habitat at range edge, yellow-cedar migration is punctuated with a past pulse tied to colder conditions." Diversity and Distributions, 2017, describes stand and lone tree mapping methodology in detail.
DOI: 10.5061/dryad.80n7f/1
title: Simulation code

description: The file provided is a gzipped tar directory, containing the following items: (1) bottleneck.c: the simulation code is written in C, and needs the Gnu Scientific Library (GSL) in order to compile. The executable is called with a single parameter file, which is provided below as an example. The parameter file references several other input files, described in the code, which are also provided here as examples. (2) param_evolve_12_0.1_1e8: the parameter file. (3) several other files that are used to supply run parameters, as referenced in the code.
DOI: 10.5061/dryad.8hc64/1
title: Script used for the boundary analysis

description: This script demonstrates our approach to calculating threshold values of parameters where the dominant eigenvalue of the matrix in eq. 7 (main text) equals zero.
DOI: 10.5061/dryad.8hc64/2
title: Script used for branching process

description: This demonstrates our approach for solving the branching process equations. For a given set of conditions, this script solves the system of equations to find U1 and U2, the fixation probabilities for the allele attractive to hummingbirds when it is present as a single copy.
DOI: 10.5061/dryad.8th5m/1
title: Landmark coordinates for the falls

description: The file contains an identifier in the format (P.OOO, where P is the number of the plant and OOO is the orientation of the fall for the respective landmark configuration, always as three digits) and the x and y coordinates of the landmarks. Note that the plants are numbered independently for the falls, standards and style branches.
DOI: 10.5061/dryad.8th5m/2
title: Landmark coordinates for the standards

description: The file contains an identifier in the format (P.OOO, where P is the number of the plant and OOO is the orientation of the standard for the respective landmark configuration, always as three digits) and the x and y coordinates of the landmarks. Note that the plants are numbered independently for the falls, standards and style branches.
DOI: 10.5061/dryad.8th5m/3
title: Landmark coordinates for the style branches

description: The file contains an identifier in the format (P.OOO, where P is the number of the plant and OOO is the orientation of the style branch for the respective landmark configuration, always as three digits) and the x and y coordinates of the landmarks. Note that the plants are numbered independently for the falls, standards and style branches.
DOI: 10.5061/dryad.96p24/3
title: Offspring data

description: File includes offspring data on body weight, hepatic endpoints (triglycerides, cytokines, folate), blood endpoints (leptin, insulin) and small intestinal tumors
DOI: 10.5061/dryad.96p24/4
title: Offspring gene expression FPKM values

description: File includes raw gene expression values as Fragments Per Kilobase of transcript per Million mapped reads (FPKM) from Cufflinks v2.2.1
DOI: 10.5061/dryad.c044c/1
title: Lagomarsino_et_al_FloralData

description: Floral measurements from herbarium specimens and PC loadings used in comparative analyses.
DOI: 10.5061/dryad.c044c/2
title: Maximum clade credibility tree

description: MCC tree from BEAST analysis of the centropogonid clade; used in phylogenetic PCA and visualization.
DOI: 10.5061/dryad.c044c/3
title: Posterior sample of trees

description: 500 trees randomly selected from the posterior distribution of trees from BEAST analysis; used for ancestral state reconstruction and OU analyses.
DOI: 10.5061/dryad.c044c/4
title: node.state.transition

description: R code to count number of transitions between pollination syndromes in rayDISC ancestral state reconstruction.
DOI: 10.5061/dryad.c044c/5
title: Campanulaceae_OU

description: R code for performing OU analyses in OUwie.
DOI: 10.5061/dryad.c044c/6
title: AIC_weights

description: R code for calculating AIC weights from OUwie analysis.
DOI: 10.5061/dryad.cb2f5/1
title: Kuebbing et al. 2017, Journal of Ecology, Functional Diversity and Invasion Impacts

description: A full description of this data set can be found in Kuebbing, SE, DS Maynard, and MA Bradford (2017) Linking functional diversity and ecosystem processes: a framework for using functional diversity metrics to predict the ecosystem impact of functionally unique species. Journal of Ecology.                           DATA SET 1: Brief Methods (for full methods see Kuebbing et al. 2017, Journal of Ecology). We used laboratory microcosm experiments to assess litter decomposition dynamics of litter mixtures. Each microcosm consisted of 1 g of 2 mm-milled leaf litter and 0.25 g of mineral soil in 50-mL centrifuge tubes. Each microcosm contained in equal proportion litter from each of the three dominant canopy trees (Carya cordiformis, Quercus alba, and Q. rubra), in addition to one of the 18 understory plants. The latter were added at three relative abundances (1%, 5%, and 25%). There were 216 microcosms (18 understory plants × 3 proportions [1%, 5%, and 25%] × 4 replicates) and 4 tree-canopy litter control replicates, bringing the total number of microcosms to 220. DATA SET 2: Brief Methods (for full methods see Kuebbing et al. 2017, Journal of Ecology). To assess green leaf traits, we collected 5 green leaves from a minimum of 5 individuals per species in summer 2014. For canopy trees, we “sling-shot sampled” canopy branches to collect full-sun leaves. For understory species, we randomly sampled leaves from individuals. We selected leaves that appeared free of herbivory as well as fungal or bacterial infection. We scanned fully-hydrated leaves on a flatbed scanner within 24 h of collection and then dried them at 60°C for 72 h before measuring mass. To estimate specific leaf area, we measured scanned leaf surface area with digital software (ImageJ v.1.51f) and divided area by dry mass. To assess the green leaf chemical traits, we ball milled the material (Spex CertiPrep 8000-D Mixer Mill, Metuchen, New Jersey, USA) and determined C and N concentrations using Micro-Dumas combustion analysis. To assess leaf litter traits, we collected litter in fall 2014 from senescing plants. We collected freshly-fallen leaves from the ground or shook senesced leaves free from branches. Litter was air-dried and leaves were selected that had no evidence of fungal colonization or herbivory. We milled all litter to pass a 2-mm mesh (Wiley® Cutting Mill, Model 2, Thomas Scientific, Swedesboro, New Jersey, USA), creating a consistent size class across species (Strickland et al. 2009; Keiser et al. 2011; 2013). We used the same method as for green leaves to determine litter total N and C. To assess litter P we used acid digestion and colorimetric analysis of milled litter. To measure lignin we used the ANKOM acid detergent lignin method (ANKOM Technology, Macedon NY; protocol at www.ankom.com). We report total C, N and P on a percent mass basis and acid detergent lignin (ADL) on a per gram dry mass basis.
DOI: 10.5061/dryad.db561/1
title: BAMM Control Files
DOI: 10.5061/dryad.f18q0/1
title: Last Catch Dates

description: This is the raw data of the fishermen interviews used in this paper
DOI: 10.5061/dryad.fd57r/2
title: Survival and growth surveys for 32 tropical dry forest tree species in a restoration experiment on degraded Vertisols
DOI: 10.5061/dryad.fm03p/3
title: distribution map files

description: kml files with records for all material examined and type material for each species, to be used for visualizing species distributions.  See Readme file for more details.
DOI: 10.5061/dryad.j05n0/1
title: Negative Results

description: This data include all the functional complementation assay pictures showing negative results.
DOI: 10.5061/dryad.k46r2/18
title: TCB_Scen4.3b_map

description: Landscape map portraying restoration Scenario 4.3
DOI: 10.5061/dryad.k46r2/19
title: TCB_Scen4.4b_map

description: Landscape map portraying restoration Scenario 4.4
DOI: 10.5061/dryad.k46r2/20
title: TCB_Scen4.5b_map

description: Landscape map portraying restoration Scenario 4.5
DOI: 10.5061/dryad.k46r2/21
title: TCB_Scen5.1b_map

description: Landscape map portraying restoration Scenario 5.1
DOI: 10.5061/dryad.k46r2/22
title: TCB_Scen5.2b_map

description: Landscape map portraying restoration Scenario 5.2
DOI: 10.5061/dryad.k46r2/23
title: TCB_Scen5.3b_map

description: Landscape map portraying restoration Scenario 5.3
DOI: 10.5061/dryad.k46r2/24
title: TCB_Scen5.4b_map

description: Landscape map portraying restoration Scenario 5.4
DOI: 10.5061/dryad.k46r2/25
title: TCB_Scen5.5b_map

description: Landscape map portraying restoration Scenario 5.5
DOI: 10.5061/dryad.k46r2/26
title: TCB_Scen6.1b_map

description: Landscape map portraying restoration Scenario 6.1
DOI: 10.5061/dryad.p4sg5/1
title: Video of a synchronized breather solution

description: This video shows a three-dimensional projection of a quasiperiodic solution on an invariant 2-torus for the four-dimensional normal form for a system with Huygens (exchange) symmetry near a double Hopf bifurcation.  The visual result of this projection is a trajectory riding the surface of a breathing torus.
DOI: 10.5061/dryad.p4sg5/2
title: Video of a chaotic breather solution

description: This video shows a three-dimensional projection of a chaotic solution for the four-dimensional normal form for a system with Huygens (exchange) symmetry near a double Hopf bifurcation.  The visual result of this projection is a trajectory riding the surface of a breathing torus but filling a three-dimensional space.
DOI: 10.5061/dryad.r75qr/1
title: Granato_Kummerli_BMC_EvolBiol_2017

description: Includes raw data for all figures (including supplementary figures).
DOI: 10.5061/dryad.r7q86/3
title: hyRAD performance metrics

description: Table with information on numerous enrichment, sequencing, and assembly statistics for both modern and historic S. torotoro hyRAD libraries.
DOI: 10.5061/dryad.r7q86/4
title: S. torotoro full data SNP matrix

description: Full data (39,105 SNPs) matrix for 19 individuals of S. torotoro, in Eigenstrat (.geno) format.
DOI: 10.5061/dryad.sh0v5/1
title: Maximum likelihood tree

description: Molecular phylogeny estimated from maximum likelihood
DOI: 10.5061/dryad.sh0v5/2
title: Trait data

description: Trait data for species observed in restoration plots
DOI: 10.5061/dryad.sh0v5/3
title: Plot composition -including planted individuals
DOI: 10.5061/dryad.sh0v5/4
title: Plot composition -EXCLUDING planted individuals
DOI: 10.17632/wtxyx9g4jg.2
title: Data for: A successive approximation method to precisely measure leakage current of rechargeable Lithium coin battery

description: excel files for two main figures
DOI: 10.5061/dryad.12751/50
title: Appendix Figure 41

description: The Data (an Origin file) used for Appendix Figure 41
DOI: 10.5061/dryad.12751/51
title: Appendix Figure 42

description: The Data (an Origin file) used for Appendix Figure 42
DOI: 10.5061/dryad.12751/52
title: Appendix Figure 43

description: The Data (an Origin file) used for Appendix Figure 43
DOI: 10.5061/dryad.12751/53
title: Appendix Figure 45

description: The Data (an Origin file) used for Appendix Figure 45
DOI: 10.5061/dryad.12751/54
title: Appendix Figure 46

description: The Data (an Origin file) used for Appendix Figure 46
DOI: 10.5061/dryad.12751/55
title: Appendix Figure 47

description: The Data (an Origin file) used for Appendix Figure 47
DOI: 10.5061/dryad.12751/56
title: Appendix Figure 48

description: The Data (an Origin file) used for Appendix Figure 48
DOI: 10.5061/dryad.12751/57
title: Appendix Figure 49

description: The Data (an Origin file) used for Appendix Figure 49
DOI: 10.5061/dryad.146b6/1
title: Consumption - No choice experiment

description: Nutrient consumption in the no choice experiment
DOI: 10.5061/dryad.146b6/2
title: Egg production - No choice experiment
DOI: 10.5061/dryad.146b6/3
title: Consumption - Dietary choice experiment
DOI: 10.5061/dryad.15081/1
title: Pedigree and phenotypic data

description: Data on genetic parentage, rearing environment, and phenotype of nestling tree swallows
DOI: 10.5061/dryad.1s9g1/1
title: CORTWNVMS_forDryad_Gervasi_6_9_17

description: Individual sheets for analyses of survival, viremia, cytokine levels, host performance, tolerance, and infectiousness
DOI: 10.5061/dryad.25743/1
title: Calibrated species trees based on trnK-matK, rbcL, and ndhF including Psathyrostachys.

description: Calibrated multispecies coalescent derived from three chloroplast loci trnK-matK, rbcL and ndhF of all Triticeae accessions (excluding polyploid wheats). Sequences of Brachypodium distachyon, Oryza sativa and Zea mays were included as outgroups. Posterior probability values are given for all nodes. Divergence time estimates were inferred using the secondary calibration points from Marcussen et al. [20] for the Brachypodium-Triticeae split (mean 44.44 million years ago). Node bars indicate the age range with 95% interval of the highest probability density. For the analysis Triticum monococcum and T. boeoticum, Secale cereale and S. vavilovii, Pseudoroegneria tauri and Ps. libanotica, Taeniatherum caput-medusae and Tae. crinitum, Agropyron cristatum and Agr. cimmericum were each subsumed under a single species name (Additional file 1: Table S1).
DOI: 10.5061/dryad.2j27b/11
title: i8_barcodes_July2016_MEC-17-0128

description: Barcodes associated with ZBCi8-V1T-1_S49_L006_R1_001.fastq.gz.
DOI: 10.5061/dryad.2j27b/12
title: i12_barcodes_July2016_MEC-17-0128

description: Barcodes associated with ZBCi12-V1T-1_S50_L006_R1_001.fastq.
DOI: 10.5061/dryad.2j27b/13
title: i3_barcodes_July2016_MEC-17-0128

description: Barcodes associated with ZBCi3-V1T-1_S44_L006_R1_001.fastq.gz.