cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1487696.v2
title: Metabolite BridgeDb ID Mapping Database (20150717)

description: BridgeDb ID mapping database for metabolites, using HMDB 3.6, ChEBI 125, and Wikidata (15 April) as data sources. Affiliation: Dept. of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, The Netherlands
DOI: 10.6084/m9.figshare.28113560.v1
title: Analysis of Offensive Patterns After Timeouts in Critical Moments in the EuroLeague 2022/23 (data files for SPSS and Theme)

description: Este artículo analiza los patrones ofensivos después de los tiempos muertos (ATOs) en momentos críticos de los partidos de la temporada 2022/23 de la EuroLeague masculina. Utilizando metodología observacional y herramientas estadísticas avanzadas, se evaluaron 365 ATOs de 169 partidos cerrados (diferencia final de 10 puntos o menos). Los hallazgos destacan que los equipos líderes finalizan las jugadas con mayor éxito a través de tiros libres tras faltas, mientras que los equipos perdedores tienden a emplear estrategias ofensivas más rápidas, como bandejas y triples. Estos resultados ofrecen a entrenadores y personal técnico información clave para optimizar decisiones tácticas en momentos de alta presión. Además, el estudio subraya la importancia de entrenar estas jugadas en condiciones que simulen la intensidad física y psicológica de la competición real.En el directorio se encuentran tres archivos. En el subdirectorio <b>SPSS </b>se incluye el archivo de la base de datos diseñado para su uso con el software IBM SPSS (Statistical Package for the Social Sciences). Por otro lado, en el subdirectorio <b>THEME6</b> se encuentran dos archivos compatibles con el programa Theme 6 Edu para la búsqueda de T-Patterns. Si se utiliza Theme 5, será necesario añadir al archivo VVT el criterio "Inicio-Fin" con las categorías <code>:</code> y <code>&</code>. De no realizar esta modificación, el archivo no funcionará correctamente.---------------------------This article examines offensive patterns after timeouts (ATOs) during critical moments of the 2022/23 men's EuroLeague season. Using observational methodology and advanced statistical tools, 365 ATOs from 169 close-score games (final point difference of 10 or fewer) were analyzed. Findings highlight that leading teams successfully conclude plays through free throws following fouls, while trailing teams often rely on quicker offensive strategies like layups and three-pointers. These insights provide coaches and technical staff with critical information to optimize tactical decisions under high-pressure conditions. The study also emphasizes the importance of training these plays in scenarios that replicate the physical and psychological intensity of real competition.In the directory, three files are available. The <b>SPSS </b>subdirectory contains the database file for use with IBM's Statistical Package for the Social Sciences (SPSS). Additionally, the <b>THEME6</b> subdirectory includes two files compatible with the Theme 6 Edu software for T-Pattern analysis. If using Theme 5, the <code><strong>:</strong></code>and <code><strong>&</strong></code> categories must be added to the "Start-End" criterion in the VVT file. Without this adjustment, the file will not function properly.
DOI: 10.6084/m9.figshare.20464083.v1
title: Rdatas

description: Processed data
DOI: 10.6084/m9.figshare.24042828.v1
title: Supplementary Material for: The involvement of PGRMC1 signaling in cognitive impairment induced by long-term clozapine treatment in rats

description: Introduction Progesterone receptor component 1 (PGRMC1) has been identified as a potential target in atypical antipsychotic drug-induced metabolic disturbances as well as neuroprotection in the central nervous system. In our study, we aimed to figure out the essential role of PGRMC1 signaling pathway underlying clozapine-induced cognitive impairment. Methods In male SD rats, we utilized recombinant adeno-associated viruses (AAV/BBB2.0) and the specific inhibitor of PGRMC1 (AG205) to regulate the expression of PGRMC1 in the brain, with a special focus on the hippocampus. Treatments of clozapine and AG205 were conducted for 28 days and subsequent behavioral tests including modified Elevated Plus Maze (mEPM) and Morris Water Maze (MWM) were conducted to evaluate the cognitive performance. Hippocampal protein expressions were measured by western blotting. Results Our study showed that long-term clozapine administration led to cognitive impairment as confirmed by behavioral tests as well as histopathological examination in the hippocampus. Clozapine inhibited neural survival through the PGRMC1/EGFR/GLP1R-PI3K-Akt signaling pathway, leading to a decrease in the downstream survival factor brain-derived neurotrophic factor (BDNF), and simultaneously promoted neural apoptosis in the rat hippocampus. Intriguingly, by targeting at the hippocampal PGRMC1, we found that inhibiting PGRMC1 mimics, while its upregulation notably mitigates clozapine-induced cognitive impairment through PGRMC1 and its downstream signaling pathways. Conclusion PGRMC1 overexpression could protect hippocampus-dependent cognitive impairment induced by clozapine. This effect appears to arise, in part, from the upregulated expression of PGRMC1/EGFR/GLP1R and the activation of downstream PI3K-Akt-BDNF and caspase-3 signaling pathways.
DOI: 10.6084/m9.figshare.24070359.v1
title: Autometa 2 test data: simulated communities

description: Autometa simulated communities datasets and ground truths.
DOI: 10.6084/m9.figshare.16818046.v2
title: Disparities among crop species in the evolution of growth rates: the role of distinct origins and domestication histories

description: The "DomesticationRGR" folder consists of four subfolders: The "data" subfolder contains all the input (raw) data used in the analyses for the extensive and intensive experiments. This includes the destructive data used to calibrate mass and area (harvest.xlsx) and the non-destructive data used to fit growth curves (monitoring.xlsx), as well as crop (crop_histories.xlsx) and accession data (acc_origins.xlsx). The "figs" subfolder contains the figures generated by the analyses. The "output" subfolder contains all kinds of intermediate or output files (e.g., processed datasets, etc.). The "scripts" subfolder contains R files documenting the data preparation and statistical analyses (dataprep.R) and the generation of figures (fig1prod.R, fig2prod.R, fig3prod.R, fig4prod.R, fig5prod.R).<br>
DOI: 10.6084/m9.figshare.28636334.v1
title: Tabla extracción de datos primarios

description: En la siguiente tabla, se muestra la extracción de datos primarios de los papers seleccionados.
DOI: 10.6084/m9.figshare.28742696.v1
title: Virus transport in density-dependent ASR.rar

description: The data provided here for collecting model outputs and plotting figures in our paper.
DOI: 10.6084/m9.figshare.21506910.v1
title: Additional file 2 of Effect of up to 30-days of storage at different temperatures on detection of feline kidney injury molecule-1 in urine

description: Additional file 2.
DOI: 10.6084/m9.figshare.27327789.v1
title: GPCR Trajectory files with modulators

description: G-protein-coupled receptors (GPCRs) make up the largest superfamily of human membrane proteins and represent primary targets of ∼1/3 of currently marketed drugs. Allosteric modulators have emerged as more selective drug candidates compared with orthosteric agonists and antagonists. However, many X-ray and cryo-EM structures of GPCRs resolved so far exhibit negligible differences upon the binding of positive and negative allosteric modulators (PAMs and NAMs). The mechanism of dynamic allosteric modulation in GPCRs remains unclear. In this work, we have systematically mapped dynamic changes in free energy landscapes of GPCRs upon binding of allosteric modulators using the Gaussian accelerated molecular dynamics (GaMD), deep learning (DL), and free energy prOfiling Workflow (GLOW). GaMD simulations were performed for a total of 66 μs on 44 GPCR systems in the presence and absence of the modulator. DL and free energy calculations revealed significantly reduced dynamic fluctuations and conformational space of GPCRs upon modulator binding. While the modulator-free GPCRs often sampled multiple low-energy conformational states, the NAMs and PAMs confined the inactive and active agonist-G-protein-bound GPCRs, respectively, to mostly only one specific conformation for signaling. Such cooperative effects were significantly reduced for binding of the selective modulators to “non-cognate” receptor subtypes. Therefore, GPCR allostery exhibits a dynamic “conformational selection” mechanism. In the absence of available modulator-bound structures as for most current GPCRs, it is critical to use a structural ensemble of representative GPCR conformations rather than a single structure for compound docking (“ensemble docking”), which will potentially improve structure-based design of novel allosteric drugs of GPCRs.
DOI: 10.6084/m9.figshare.28598246.v1
title: Dataset_1.csv

description: Dataset 1 contained 880 positive instances that centrally identified a 6mA, while the negative instances consisted of 880 negative cases
DOI: 10.6084/m9.figshare.5249131.v2
title: Plant survey data Kroombit Tops 2014.xlsx

description: Kroombit Tops plant survey data used for the following study: <br>Mason, E.D., Firn, J., Hines, H.B., and A.M. Baker. 2017. Plant diversity and structure describes the presence of a new, threatened Australian marsupial within its highly restricted, post-fire habitat. PLOS ONE.<br>Data collection methodology is detailed in the above paper.
DOI: 10.6084/m9.figshare.7151087.v1
title: Hydropower Development Potential Index

description: This global dataset continuously ranks from &gt;0 (minimal) to 1 (highest) all suitable lands at a 1-km resolution adjacent to rivers for locating a utility-scaled hydropower facility via impoundment (i.e. hydropower dams), diversion, or instream facilities. These data are derived from the weighted summary of six criteria maps: 1) resource yield potential in annual megawatt hours calculated using global river flow and head values, 2) inverse population density, 3) distanced to the electrical grid, 4) distance to major roads, 5) distance to railways or ports, and 6) distance to urban areas. Included with these data are: a) the classified version of the continuous DPI, b) the corresponding classified uncertainty dataset, c) detailed sensitivity tables for all criteria used in the analysis, and d) full description of the constraints and criteria used in the analysis with the Analytic Hierarch Process (AHP) pairwise comparison matrix and resulting criteria weights derived from AHP.
DOI: 10.6084/m9.figshare.7352447.v1
title: Bacteria diversity analysis.zip

description: soil bacteria diversity
DOI: 10.6084/m9.figshare.20324493.v1
title: gff files for 10 Ganoderma

description: Annotation for Ganoderma genome assemblies
DOI: 10.6084/m9.figshare.26001481.v1
title: Supplementary Material for: Body composition after endoscopic lung volume reduction with endobronchial valves: A prospective study

description: Introduction: Patients with chronic obstructive pulmonary disease (COPD) and emphysema experience malnutrition and pulmonary cachexia. Endoscopic lung volume reduction (ELVR) with endobronchial valves has not only improved lung function, exercise capacity, and quality of life, but also influenced body weight. Only a few data are available on body composition changes after ELVR. 
Methods: This single-center prospective study of patients with advanced COPD investigates body composition before and after endoscopic valve treatment using multifrequency bioelectrical impedance analysis (BIA). The following parameters were evaluated in addition to clinical data and routine tests: body weight, body mass index (BMI), basal metabolic rate, total body water, body fat, cell percentage, phase angle, intracellular water (ICW), extracellular water (ECW), extracellular mass (ECM), body cell mas (BCM), lean body mass (LBM = ECM + BCM) and fat-free mass index. 
Results: A total of 23 patients (mean emphysema index 37.2 ± 7.5 %, BMI 23.4 ± 4.3 kg/m²) experienced improvements in lung function and exercise capacity with ELVR. Complete lobar atelectasis was achieved in 39.1% of participants. A non-statistically significant increase in body weight and BMI was observed after ELVR (p = 0.111 and p = 0.102). BIA measurement revealed a worsening of phase angle, cell percentage and ECM/BCM and thus of body composition, but without statistical significance. This is mainly due to a statistically significant increase in ECM, ECW, and ICW (all p &lt; 0.001). 
Conclusion: ELVR demonstrated no beneficial changes in body composition, although patients tend to gain weight. A larger cohort is warranted to confirm these findings.
DOI: 10.6084/m9.figshare.27021463.v2
title: The raw data of 16S and ITS sequencing

description: The raw data of 16S and ITS sequencing.Fungus represent this sample has been sequenced for ITS.Bacteria represent this sample has been sequenced for 16S.Sol represents S group.Cap represents G group.
DOI: 10.6084/m9.figshare.4903295.v1
title: Relationship between real-time weather and taxi tipping behaviour: A large-scale data investigation

description: This dataset includes taxi tipping data and the SAS codes to apply non-proportional models.
DOI: 10.6084/m9.figshare.21397482.v3
title: Van der Waals materials for applications in nanophotonics Fig. 1(b)-(l) data as well as parameters for analytical fits of ellipsometry data for extracting refractive indices and extinction coefficients.

description: Refractive indices, extinction coefficients and fitting parameters for ellipsometry results of van der Waals materials
DOI: 10.6084/m9.figshare.28601363.v2
title: Figure 5

description: Raw dataset
DOI: 10.6084/m9.figshare.5644645.v1
title: Phenological characterization and temperature requirements of Annona squamosa L. in the Brazilian semiarid region

description: ABSTRACT The phenological growth stages of various species of monocotyledonous and dicotyledonous plants can be uniformly coded using the Biologische Bundesanstalt, Bundessortenamt, und Chemische Industrie (BBCH) scale. The aim of the present study was to determine the duration of different phenological stages and the temperature requirements of the sugar-apple, Annona squamosa, during two crop cycles in the semiarid region of Brazil. Phenological stages were divided into eight of ten possible principal stages: (0) bud development, (1) leaf development, (3) shoot/branch development, (5) inflorescence emergence, (6) flowering, (7) fruit development, (8) fruit maturity and (9) senescence and the beginning of dormancy. The phenological cycle of the sugar-apple from having closed leaf buds to the fruit ripening stage lasted 149 and 164 days with temperature requirements of 1684.5 and 1786.7 degree days (DD) for the first and second crop cycles, respectively. The results provided important information that will inform the correct timing for crop management practices.
DOI: 10.6084/m9.figshare.25999900.v1
title: Performance_011919.mat

description: Data structure from the performance done on 01/19/19.
DOI: 10.6084/m9.figshare.26539753.v3
title: File_S1_HookDB

description: The Hook Database, provided as a fasta file. It must be converted to a Diamond database for use with EukPhylo. This dataset is a curated database of 15,414 GF, used as reference to assign gene families within EukPhylo part 1.
DOI: 10.6084/m9.figshare.28622159.v1
title: Data Sets S1-S4

description: Data Sets S1-S4
DOI: 10.6084/m9.figshare.22704757.v1
title: Mapping high-resolution forest aboveground biomass of China using multisource remote sensing data

description: Forest aboveground biomass (AGB) estimation is crucial for carbon cycle studies and climate change mitigation actions. However, because of limitations in timely and reliable forestry surveys and high-resolution remote sensing data, producing a fine resolution and spatial continuous forest AGB map of China is challenging. Here, we combined 4789 ground-truth AGB measurements and multisource remote sensing data such as a recently released forest canopy-height product, optical spectral indexes, topographic data, climatological data, and soil properties to train a random forest regression model for forest AGB estimation of China at 30-m resolution. The accuracy of the estimated AGB can yield R<sup>2</sup> = 0.67 and RMSE = 70.71 Mg/ha. The nationwide estimates show that the average forest AGB and total forest carbon storage were 97.57 ± 23.85 Mg/ha and 11.06 Pg C for the year 2019, respectively. The value of AGB uncertainty ranges from 0.68 Mg/ha to 37.80 Mg/ha, and the average AGB uncertainty was 4.32 ± 1.75 Mg/ha. The forest AGB estimates of China in this study correspond reasonably well with the AGB estimates derived from the forestry and grassland statistical yearbook at the provincial level (R<sup>2</sup> = 0.61, RMSE = 30.15 Mg/ha). In addition, we found that previous AGB products generally underestimate the forest AGB compared with our estimated AGB at the pixel-level and ground-truth AGB measurements. The high-resolution forest AGB map provides an important alternative data source for forest carbon cycle studies and can be used as a baseline map for forest management and conservation practices.
DOI: 10.6084/m9.figshare.5048311.v1
title: Paleoclimate explains a unique proportion of the global variation in soil bacterial communities.

description: Data from " M. Delgado-Baquerizo, A. Bissett, D.J. Eldridge, F.T. Maestre, Ji-Z. He, J-T. Wang, K. Hamonts, Y-R. Liu, B.K. Singh, N. Fierer. Paleoclimate explains a unique amount of the global variation in soil bacterial communities across natural ecosystems.” There are fifteen spreadsheets with data. The spreadsheets "Dataset_OTU_Table" contain the OTU tables used in this paper. The spreadsheets "Dataset_environmental" contain the raw environmental data, including the paleoclimatic information, used in this paper. The spreadsheets "Dataset_metadata" contain the associated metadata, where a description of all the variables and units can be found.<br>
DOI: 10.6084/m9.figshare.24223114.v2
title: Tabla Suplementaria 5, Artículo 3, y Tablas Suplementarias Excel 1 y 2

description: Material suplementario tesis Lara Sanoguera Miralles.
DOI: 10.6084/m9.figshare.4535540.v1
title: Supplementary Material for: A High-Resolution Comparative Chromosome Map of Cricetus cricetus and Peromyscus eremicus Reveals the Involvement of Constitutive Heterochromatin in Breakpoint Regions

description: Compared to humans and other mammals, rodent genomes, specifically Muroidea species, underwent intense chromosome reshuffling in which many complex structural rearrangements occurred. This fact makes them preferential animal models for studying the process of karyotype evolution. Here, we present the first combined chromosome comparative maps between 2 Cricetidae species, <i>Cricetus cricetus</i> and <i>Peromyscus eremicus</i>, and the index species <i>Mus musculus</i> and <i>Rattus norvegicus</i>. Comparative chromosome painting was done using mouse and rat paint probes together with in silico analysis from the Ensembl genome browser database. Hereby, evolutionary events (inter- and intrachromosomal rearrangements) that occurred in <i>C. cricetus</i> and <i>P. eremicus</i> since the putative ancestral Muroidea genome could be inferred, and evolutionary breakpoint regions could be detected. A colocalization of constitutive heterochromatin and evolutionary breakpoint regions in each genome was observed. Our results suggest the involvement of constitutive heterochromatin in karyotype restructuring of these species, despite the different levels of conservation of the <i>C. cricetus</i> (derivative) and <i>P. eremicus</i> (conserved) genomes.
DOI: 10.6084/m9.figshare.956246.v1
title: McDonald et al., 2014 PSCI - Study 1 Data

description: Datasets from Study 1 of the publication: <br>McDonald, M.M., Donnellan, M.B., Lang, R. & Nikolajuk, K. (2014). Treating prejudice with Imagery: Easier said than done? Psychological Science published online 6 February 2014. DOI: 10.1177/0956797613516010
DOI: 10.21227/nbp8-7r47
title: "CSI-BFI-HAR: Datasets for Human Activity Recognition with Integrated Sensing and Communications in Wi-Fi"

description: "Wi-Fi sensing has emerged as a promising non-intrusive approach for human activity recognition (HAR), leveraging the widespread availability of Wi-Fi-enabled devices. While machine learning tools help extract meaningful features from complex wireless propagation patterns, developing robust and domain-adaptive models remains challenging without diverse datasets. To address this, we release two comprehensive datasets containing Channel State Information (CSI) and Beamforming Feedback Information (BFI), collected using commercial IEEE 802.11ac devices across multiple days in both LoS and NLoS scenarios. The first dataset includes 20 activities performed by six subjects across six setups. The second captures simultaneous multi-subject activities, with three individuals performing distinct actions concurrently. Notably, this is the first public HAR dataset to include corresponding BFI measurements"
DOI: 10.6084/m9.figshare.11860818.v1
title: Virtual reality therapy for upper limb rehabilitation in patients with stroke: a meta-analysis of randomized clinical trials

description: <b>Background:</b> Stroke is a major cause of life-long disability in adults, associated with poor quality of life. Virtual reality (VR)-based therapy systems are known to be helpful in improving motor functions following stroke, but recent clinical findings have not been included in the previous publications of meta-analysis studies. <b>Aims:</b> This meta-analysis was based on the available literature to evaluate the therapeutic potential of VR as compared to dose-matched conventional therapies (CT) in patients with stroke. <b>Methods:</b> We retrieved relevant articles in EMBASE, MEDLINE, PubMed, and Web of Science published between 2010 and February 2019. Peer-reviewed randomized controlled trials that compared VR with CT were included. <b>Results:</b> A total of 27 studies met the inclusion criteria. The analysis indicated that the VR group showed statistically significant improvement in the recovery of UL function (Fugl-Meyer Upper Extremity [FM-UE]: n = 20 studies, Mean Difference [MD] = 3.84, <i>P</i> = .01), activity (Box and Block Test [BBT]: n = 13, MD = 3.82, <i>P</i> = .04), and participation (Motor Activity Log [MAL]: n = 6, MD = 0.8, <i>P</i> = .0001) versus the control group. <b>Conclusion:</b> VR appears to be a promising therapeutic technology for UL motor rehabilitation in patients with stroke.
DOI: 10.6084/m9.figshare.9249023.v2
title: Quantification Figure 3 (GraphPad Prism file)

description: Cytokines and BDNF secretion from human iPSC-derived astrocytes. Conditioned media were collected after stimulating cells during 24 h with 10 ng/mL TNF-α. Cytokines and BDNF secretion was measured in the conditioned media and compared with cells treated with vehicle. (a) - Pro-inflammatory cytokines: Interleukin-1 beta (IL-1β), Interleukin-8 (IL-8), Interferon gamma (IFN-γ) and Tumor necrosis factor alpha (TNF-α); (b) - modulatory cytokines: Interleukin-2 (IL-2), Interleukin-4 (IL-4) and Interleukin-6 (IL-6); (c) - anti-inflammatory cytokines Interleukin-10 (IL-10), Interleukin-13 (IL-13) and Brain-derived neurotrophic factor (BDNF). Data are presented as means ± SEM of concentrations in (pg/ml) of secreted factors. Conditioned media were collected from 4 cell lines and the experiments were performed in duplicates. *P &lt; 0.05; **P &lt; 0.01; ***P &lt; 0.001; ns - non-significant. Unpaired Student´s t-test.