cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.3h4m5.1/14.1
title: C1_PartitionFinder

description: File_C1 (zipped, plain text).  Matrix with molecular data for 46 extant taxa (extracted from [6]), in Phylip format (mammals.phy); PartitionFinder [12] command file (cfg) with 71 candidate partitions (by genes and by codons, with noncoding genes treated as single candidate partitions); best scheme with 7 partitions requiring separate substitution models, found by PartitionFinder using the Bayesian Information Criterion with unlinked branch lengths.
DOI: 10.5061/dryad.3h4m5.1/15.1
title: C2_1clock - MrBayes file

description: File_C2 (plain text).  MrBayes executable file for a total-evidence dating analysis of all 86 taxa in the matrix in [6], using a single relaxed (independent gamma rates) clock for all traits (morphological and molecular).  The sampled ancestor birth-death tree prior [17], and the Markov model of morphological evolution [18,19], were used. Optimal substitution models and substitution-model-partitions were found with PartitionFinder for molecular data (see C1) and with stepping-stone analysis in MrBayes for morphological data as implemented in [10].  Numerous (&gt;20) MCMC runs were initially performed for 5 million generations to investigate tuning, mixing and convergence.  The final analysis was then performed with 4 runs of 20 million generations, with the first 30% of samples discarded as burnin.
DOI: 10.5061/dryad.3h4m5.1/16.1
title: C3_1clock_PostburninTrees&Params_folder

description: File_C3 (zipped, plain text).  The full MCMC tree and parameter output files from the MrBayes analysis in file C1.   Only post-burnin samples are included to reduce file sizes. Run the MrBayes file in C2 (after disabling the MCMC command and setting burnin to 0) to generate consensus trees and statistics from these files.
DOI: 10.5061/dryad.3h4m5.1/17.1
title: C4_1clock_con_fig

description: File_C4 (approximate nexus format).  The majority-rule consensus tree from the MrBayes analysis in files C1-2.
DOI: 10.5061/dryad.3h4m5.1/18.1
title: C5_1clock_topologyConvergence

description: File_C5 (pdf).  Convergence diagnostics for tree topologies sampled in C2.  (A) AWTY [20] plots demonstrating similar posterior probabilities for all clades across 4 runs, and (B) at different stages in a single run.  The topology convergence statistics from MrBayes and AWTY (standard deviation of split frequencies across runs) were also good ie low, being &lt;0.031 across all comparisons (see top right cells of panel A).  These patterns are consistent with good convergence.  The kink in one of the fitted lines appears to be an artefact of a glitch in AWTY.
DOI: 10.5061/dryad.3h4m5.1/19.1
title: C6_1clock_paramConvergence

description: File_C6 (plain text).  Convergence diagnostics for numerical parameters from MrBayes [9] for the analysis in Files C2-4.  PSRFs (ratio of within-run to between-run variance) is approximately 1 for all parameters, consistent with the view the MCMC runs are sampling from the same posterior and consistent with good convergence [10].
DOI: 10.5061/dryad.3h4m5.1/20.1
title: C7_8clocks MrBayes file

description: File_C7 (plain text).  MrBayes executable file for a total-evidence dating analysis of all 86 taxa in the matrix in [6], using 8 separate relaxed clocks (independent gamma rates; 7 for morphology and 1 for molecular data), as found in analysis B-3.  The sampled ancestor birth-death tree prior [17], and the Markov model of morphological evolution [18,19], were used.  Optimal substitution models and substitution-model-partitions were found with PartitionFinder for molecular data (see C1) and with stepping-stone analysis in MrBayes for morphological data [10].  Numerous (&gt;20) MCMC runs were initially performed for 20 million generations to investigate tuning, mixing and convergence.  The final analysis was then performed with 4 runs and the trees from 10 million post-burnin generations retained
	Note: The burnin for each run varies considerably due to variation in time to reach (apparent) stationarity, from 20 million to 50 million.   For computational efficiency, the 4 runs were performed separately and in all cases, the last 10 million steps (after stationarity) were retained. However, the step numbers have been readjusted in file C8 below so they are all identical across runs (ie to a common burnin of 50 million), to facilitate downstream analyses e.g. generating summary statistics in MrBayes.
DOI: 10.4121/uuid:feed7e1b-f440-426f-a3cc-40df6fc6aaf0
title: IDRA weather radar measurements - day 2013-11-09

description: Radar range: standard. Max rain level: moderate rain. Parent item: IDRA weather radar measurements - month 2013-11 Measuring instrument: IDRA atmospheric radar in CESAR observatory, Cabauw IRCTR has built a high resolution radar system, IDRA (IRCTR Drizzle Radar), aimed at the detailed observation of the spatial and temporal distribution of rainfall and drizzle. The system was placed at the end of August 2007 on top of a 213 m high meteorological tower in the CESAR (Cabauw Experimental Site for Atmospheric Research) observatory in Cabauw, The Netherlands. This location has several advantages: In the first place, an increased sensitivity due to the reduction of the influence of ground clutter. Secondly, it allows direct observation of the horizontal distribution of low level clouds and fog. Finally, the presence of other instruments in the vicinity enhances the understanding of the physical processes in the atmosphere by synergistically combining their measurements. Data from other instruments at CESAR are available at {http://www.cesar-database.nl}. IDRA provides the horizontal distribution of reflectivity, mean Doppler velocity, Doppler spectrum width and polarimetric parameters like differential reflectivity, linear depolarization ratio or specific differential phase. The data collected is freely available to the scientific community.
DOI: 10.4121/uuid:6c596b2c-4418-4bf5-86d9-cbd32668fe36
title: The water balance and climate change in Lelystad

description: Measurements of precipitation, groundwater levels, storm sewer discharges and drainage discharges in the period 1968-1985 at two locations in Lelystad, the Netherlands. The data were restructured for MSc research in 2014.
DOI: 10.4121/uuid:e59c6ad1-db1e-45ce-8630-c83083bf17b3
title: Fracture patterns and fluid flow in Latemar carbonate platform

description: Fracture network descriptions and fluid flow modelling results of Latemar carbonate platform in Dolomites, Italy. Fractures are digitized from aerial photos and provided as shapefiles. Output from fluid flow simulations (vtk files, http://www.vtk.org/) account for flow through matrix and fractures explicitly on the basis of deterministic and stochastic network models.
DOI: 10.4121/uuid:d4d23b8e-2077-4592-8b47-cb476ad16e12
title: Historical IP Address Routing Information

description: This data enables you to perform offline IP address to Autonomous System Number lookups for any point in time. The data is based on information provided by Route-Views. The best way to use this dataset is throught the pyasn python package developed specifically for this purpose (https://pypi.python.org/pypi/pyasn).
DOI: 10.4121/uuid:4e65928b-83a4-4add-aea6-d52c58c7b154
title: Open filters under wave loading, laboratory measurements

description: Wave height and orbital velocity measurements in the wave flume of the Laboratory for Fluid Dynamics at Delft University of Technology
DOI: 10.4121/uuid:1fe5b483-37da-4688-ab1c-e5ba6e704736
title: Droplet Collision for Target Shaping

description: This dataset consists of simulation input files and analysis scripts concerning the use of droplet collisions at nonzero impact parameters for target shaping in a Laser-Produced-Plasma EUV source.
DOI: 10.4121/uuid:dfe20a10-d79e-41b5-b6e5-c088ce33d0fc
title: Vragenlijst expertisegebieden binnen het docentberoep

description: De bijgevoegde data in het spss bestand is verzameld in het kader van het promotieonderzoek van Anna van der Want op de Eindhoven School of Education, Technische Universiteit Eindhoven. Het betreft een onderzoek met behulp van de vragenlijst ‘procentvraag’, waarbij docenten gevraagd is om 100 punten te verdelen over vier expertisegebieden van hun beroep. De vragenlijst [zie ‘vragenlijst procentvraag.pdf] is gebaseerd op de volgende publicatie: D. Beijaard, H. Stellingwerf & N. Verloop (1997): Student teachers' outlook on teaching: a content analysis of their reflective reports on experiences in practice, European Journal of Agricultural Education and Extension, 3:4, 217-229 De vragenlijst is op papier ingevuld door 147 docenten en vervolgens ingevoerd in SPSS [zie ‘data procentvraag.spss]. In het document zijn ook gegevens over de carrièrefase van de respondent en de omvang van de aanstelling toegevoegd.De vragenlijst is ingevuld in november 2011. Voor meer informatie kan contact worden opgenomen met de Eindhoven School of Education: esoe@tue.nl
DOI: 10.4121/uuid:cf631d8c-ee8a-401b-bb84-5699f4ecc15f
title: Highly permeable and mechanically robust silicon carbide hollow fiber membranes: Supplementary Video

description: Silicon carbide (SiC) membranes have shown large potential for applications in water treatment. Being able to make these membranes in a hollow fiber geometry allows for higher surface-to-volume ratios. In this study, we present a thermal treatment procedure that is tuned to produce porous silicon carbide hollow fiber membranes with sufficient mechanical strength. Thermal treatments up to 1500 °C in either nitrogen or argon resulted in relatively strong fibers, that were still contaminated with residual carbon from the polymer binder. After treatment at a higher temperature of 1790 °C, the mechanical strength had decreased as a result of carbon removal, but after treatments at even higher temperature of 2075 °C the SiC-particles sinter together, resulting in fibers with mechanical strengths of 30–40 MPa and exceptionally high water permeabilities of 50,000 L m−2 h−1 bar−1. In this supplementary video we demonstrate the mechanical robustness and extreme clean water fluxes in a visual manner.
DOI: 10.4121/uuid:91fe7c44-9798-491e-a807-5ca40b9f2093
title: Geoelec data supplement

description: Dataset including input data and results of the European resource assessment for enhanced geothermal systems. For the assessment of geothermal resources in Europe we constructed a digital 3D temperature model of the European crust and sedimentary basins, incorporating publicly available temperature data. Using European crustal thickness models and indirect parameters such as surface heat flow measurements, temperatures were calculated for regions where data are scarce. Our temperature model of Europe has a horizontal grid resolution of 10x10 km and extends to a depth of 10 km below ground level. The model covers Europe up to the Russian border and includes Turkey and Iceland.
DOI: 10.4121/uuid:d613cc9c-c10b-4c50-be50-ba8ef7885dc5
title: Posture corpus for the behavior generator; an expressive virtual audience with flexible behavioral styles

description: To create a virtual audience with parameterized behavioral styles, real audiences’s behavior was observed, and data of their personality, mood, attitude, and energy level was collected in four conditions: positive presentation, neutral presentation, boring presentation, and critical presentation. The audience behavior was then coded for the preparation of modeling the behavioral patterns. This corpus has been used in the paper: N. Kang, W.-P. Brinkman, B. Van Riemsdijk, and M. A. Neerincx, “An Expressive Virtual Audience with Flexible Behavioral Styles,” IEEE Trans. Affect. Comput., vol. 4, no. 4, pp.
DOI: 10.4121/uuid:4eb8d0ae-53e6-4914-b241-7b53a04169ea
title: Stone stability in breakwater toes based on local hydraulic conditions

description: Experiment data and video files of the Master thesis, which focussed on the point of incipient motion in breakwater toes based on the local hydraulic conditions (pressures, velocities). Flume experiments were performed during which the pressures under several target stones were measured. The flow velocity and water height above the toe have also been measured. Most of the experiments have been recorded on video, which can give more insight in the processes governing stone movement.
DOI: 10.4121/uuid:b81aada2-f8bc-41e6-881a-d81be724245a
title: Water retention & electrical conductivity

description: This dataset was measured by AH Weerts as part of the PhD thesis. It consists of combined measurements of water retention and electrical conductivity of two sandy soils. The data was used for a publication in Water Resources Research in 1999 which contains a description of the method used. Abstract: A conceptual model that accounts for the influence of pore geometry is needed to obtain soil water conductivity from bulk soil electrical conductivity measurements in unsaturated soils. Mualem and Friedman [1991] proposed such a model, based on the hypothesis that the tortuosity factor affecting bulk soil electrical conductivity is identical to that defined for prediction of soil hydraulic conductivity. Soil water retention curves (model input) and bulk soil electrical conductivity (model output) of two soils were measured simultaneously over a wide range of soil water conductivity using a multistep outflow (MSO) experiment in combination with time domain reflectometry. The model with only one free parameter can describe the measured data. Predictions indicate a large dependence of the model outcome on the value of the fitting parameter. The fitted tortuosity parameters were used for inverse modeling of the water flow during the MSO experiments, obtaining unique estimates of the hydraulic conductivity.
DOI: 10.4121/uuid:5f909805-6415-4367-ba9b-75355c5509c0
title: Virtual-water flows related to international trade in crop, animal and industrial products (1996-2005)

description: Virtual-water flows related to trade in crop, animal and industrial products, per country and international virtual-water flows per product category (Mm3/yr). Figure of virtual water balance per country and direction of gross virtual water flows related to trade in agricultural and industrial products over the period 1996-2005. Only the biggest gross flows (&gt; 15 Gm3/yr) are shown; the fatter the arrow, the bigger the virtual water flow.
DOI: 10.4121/uuid:a5bc9ac4-f466-4cea-9d66-73631c767297
title: Monthly blue water scarcity for the world’s major river basins (1996-2005)

description: Monthly natural runoff, blue water availability, blue water footprint and blue water scarcity for the world’s major river basins.
DOI: 10.4121/uuid:f8cf795d-070c-4a76-a6db-a26b15504d93
title: Water pollution level for N and P in the world’s river basins (2000)

description: Calculated Water Pollution Levels (WPL) in the world's river basins, WPL_2000N - the water pollution level related to N for year 2000 and WPL_2000P - the water pollution level related to P for year 2000.
DOI: 10.4121/uuid:fe57648f-9125-481e-8f12-567b6ac60a8a
title: National and global water savings related to trade in agricultural and industrial products (1996-2005)

description: National water saving related to trade in agricultural and industrial products per country and global water saving related to trade in agricultural and industrial products, per product (Mm3/yr). Figure of global water savings associated with international trade in agricultural products (1996-2005). Only the biggest water savings (&gt; 5 Gm3/yr) are shown.
DOI: 10.4121/uuid:d48e2ebb-386e-4bb1-9331-955b3ef3c293
title: A Year-Long Large-Eddy Simulation of the Weather over Cabauw

description: We present results of two large-eddy simulation (LES) runs of the entire year 2012 centered at the Cabauw observational supersite in the Netherlands. The LES is coupled to a regional weather model which provides the large scale information. The simulations provide three-dimensional continuous time- series of LES-generated turbulence and clouds, which can be compared in detail to the extensive observational dataset of Cabauw. See Schalkwijk, J., Jonker, H. J. J., Siebesma, A. P., & Bosveld, F. C. (2014). A Year-Long Large-Eddy Simulation of the Weather over Cabauw: an Overview. Submitted to Monthly Weather Review
DOI: 10.4121/uuid:894e685d-6489-478b-8bc7-9e2c5106c952
title: Multimodality in the Netherlands 2011-2013

description: The data are produced by analysing microdata of Dutch National Travel Surveys and describe unimodal and multimodal travelling of Dutch people in the period 2011-2013.
DOI: 10.4121/uuid:4b9537e6-9a6c-4674-a12f-8af04fc25f10
title: Reflection and transmission through a vertical, permeable breakwater

description: Results of labtests on reflection and transmission trough a vertical permeable breakwater for the purpose of validating mathematical models. In the laboratory a model of a vertical, permeable breakwater was constructed with elastocoast and tests were done with regular and irregular waves.
DOI: 10.4121/uuid:99b42e30-5a69-4a53-8e77-c954f11dbc76
title: Global potential hydropower locations

description: The dataset contains all potential hydropower plant locations for micro to large hydropower plants based on the GMTED2010 breakline dataset (elevation) and runoff data from the Global Runoff Data Centre.
DOI: 10.4121/uuid:d2f1f146-1b34-45e4-a1f6-1f9ec6b0382f
title: Strawberry varieties differ in the emission of floral volatiles and wild bee visitation

description: Aim was to identify differences in the emission of floral volatiles of three strawberry varieties and relate this to the perception and visitation of the wild bee Osmia bicornis. Floral volatiles of the simultaneously flowering strawberry varieties Sonata, Honeoye and Darselect were collected in a greenhouse using head space collection and analysed using GC-MS. The response of the wild bee Osmia bicornis on each of the found compounds was assessed using EAGs. On a commercial strawberry field, the visitation of Osmia bicornis on the two varieties Sonata and Honeoye was observed.
DOI: 10.4121/uuid:edec3b85-3272-493f-8758-c304419f6f57
title: Bee pollination vs. strawberry yield, quality and commercial value

description: Aim was to compare effects of bee pollination and other pollination modes (wind and self-pollination) on strawberry yield and quality as well as the resulting commercial value. Data were collected on an experimental strawberry field with nine commercially important strawberry varieties in 2009 and 2010. The field was split up in 12 blocks, each contains one row of each variety. In 2009, two plants per block and variety were used for each pollination treatment. Pollination treatments were conducted by using plastic bags (slef pollination treatment), mesh bags (wind pollination treatment) or uncovered flowers (open pollination treatment). Strawberries were harvested at maturity and weight, commercial grade, firmness, colour and sugar-acid ratio assessed.
DOI: 10.4121/uuid:d5b91e46-07e7-4077-bd63-3fa2b82c847f
title: 3D Cell Phenotyping Data

description: The publication describes how, in many situations, 3D cell cultures mimic the natural organization of tissues more closely than 2D cultures. Conventional methods for phenotyping such 3D cultures use either single or multiple simple parameters based on morphology and fluorescence staining intensity. However, due to their simplicity many details are not taken into account which limits system-level study of phenotype characteristics. The authors have developed a new image analysis platform to automatically profile 3D cell phenotypes with 598 parameters including morphology, topology, and texture parameters such as wavelet and image moments. As proof of concept, they analyzed mouse breast cancer cells (4T1 cells) in a 384-well plate format following exposure to a diverse set of compounds at different concentrations. The result showed concentration dependent phenotypic trajectories for different biologically active compounds that could be used to classify compounds based on their biological target. To demonstrate the wider applicability of our method, they analyzed the phenotypes of a collection of 44 human breast cancer cell lines cultured in 3D and showed that their method correctly distinguished basal-A, basal-B, luminal and ERBB2+ cell lines in a supervised nearest neighbor classification method.
DOI: 10.4121/uuid:0b3da4b4-07ae-418a-b2ca-0bada4656fe0
title: Supplementary movies dissertation Albertas Janulevicius

description: Computational modelling of pattern formation by myxobacteria
DOI: 10.4121/uuid:b418c336-59de-44da-a7ec-ba5b828ffa20
title: Surface ocean CO2 in 1990-2013 for global carbon budget

description: The dataset was produced by a method based on "A global surface ocean fCO2 climatology based on a feed-forward neural network", DOI:10.1175/JTECH-D-13-00137.1.
DOI: 10.4121/uuid:9c71b2b9-df3b-45e2-b956-8b4e62940690
title: Surface ocean CO2 in 1990-2011 produced by using a feed-forward neural network model

description: The data in JTECH-D-13-00137.nc includes the model inputs and outputs published in "A global surface ocean fCO2 climatology based on a feed-forward neural network". DOI:10.1175/JTECH-D-13-00137.1 A new method based on DOI:10.1175/JTECH-D-13-00137.1 was developed to model surface ocean CO2. The data include the inputs and outputs of the model. The details of the method is being documented for publication.
DOI: 10.4121/uuid:b715c63f-05d2-4a9a-9628-90662a080e4d
title: Measurements in a Carousel / Metingen in een Carousel

description: This dataset essentially describes of the measurements in the carousel of the laboratory for Fluid Mechanics of the Delft University of Technology. A comprehensive documentation about the considered investigation, both concerning the theoretical background and concerning the elaboration of the experimental evidence can be found in: Booij, R., (1994), "Measurements of the flow field in a rotating annular flume ", Communications on Hydraulic and Geotechnical Engineering, report no. 94-2, (http://resolver.tudelft.nl/uuid:431193bc-8cfb-46ce-81fd-5034941b0769) The background report is in Dutch with extensive English explanation
DOI: 10.4121/uuid:bfbd480d-1b49-4494-ad2c-0a5caa383354
title: Supplementary material for publication "Analysis of a Clock Synchronization Protocol for Wireless Sensor Networks"

description: This dataset contains supplementary material for the publication F. Heidarian, J. Schmaltz and F.W. Vaandrager. Analysis of a Clock Synchronization Protocol for Wireless Sensor Networks. In Theoretical Computer Science 413:87-105, 2012. QAPL'10 special issue. The following data are included: 1. A Uppaal model of the WSN protocol 2. A manual proof of correctness of the protocol 3. The sources of an Isabelle proof of correctness of the protocol