cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/r4v-2re-8lh
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x73-jw1-r95
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gml-bgc-tm4
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jfz-e3c-qjg
title: Conularia sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tbc-gvh-4ga
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wpg-rwc-v2q
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/46y-fqc-wgq
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ndb-c2l-vbp
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3d6-5nt-j5t
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bg4-0be-hdv
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1ps-st8-0pr
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rjq-p8h-w0v
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wfg-hw9-chh
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zts-bvf-z9t
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/271-sn8-qve
title: Quartz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bry-whb-ncw
title: igneous rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4js-q1t-55e
title: Amphibolite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/38v-410-m9z
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/le4-5v3-r71
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fzp-9sn-alj
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q78-4v0-w74
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jh9-8tq-rfj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kl3-ppr-ny4
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/649-prx-klf
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8f4-l6d-svv
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9s4-yxt-41m
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0v9-zhz-p81
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y4a-pzd-t7f
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3vs-fjc-wsy
title: Cochlicopa lubrica (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jby-llb-4pp
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7n9-qn1-c5j
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pyz-rn4-r0k
title: Chitinozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5qe-asd-0dh
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c2l-xcc-03q
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bxr-xrf-ba4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lmp-cf2-ekz
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/b8v-hwn-cp0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n6r-ww5-d5d
title: †Ptilodictya lanceolata (Goldfuss, 1826)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6yc-thg-tga
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/shr-vb7-9l7
title: Baltisphaeridium? sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bv9-1xe-mx5
title: Kukersite oil shale

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wqa-fx4-7ax
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k10-ttl-4sf
title: Succinella oblonga (Draparnaud, 1801)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zdy-6xd-5ly
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q7g-zjs-c8d
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/slw-7qf-37x
title: Favosites? sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n98-v7c-nbw
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0yg-4mk-md3
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3l3-6bx-hyq
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cg0-kt2-mma
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1pn-bwt-4se
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9l4-0js-eap
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/29g-abx-26v
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4ym-nww-dkn
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pw0-c7z-yw1
title: Stelliferidium stelligerum (Gorka, 1967) Deunff, Gorka and Rauscher 1974

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rxn-l50-90t
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.vfxq3d
title: Occurrence Download

description: A dataset containing 877 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aeschynomene schimperi Hochst. ex A.Rich.",
 "Continent is Africa"
 ]
}

 The dataset includes 877 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009111-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/pgf-cv6-hlq
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/spd-1b1-x4x
title: Fruticicola fruticum (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1h7-85f-vlp
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/54g-1c0-9md
title: Leiosphaeridia tenuissima Eisenack, 1958

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1ds-gpa-4a1
title: Stelliferidium furcatum (Deunff, 1961) Deunff, Gorka and Rauscher, 1974

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5af-r94-bsx
title: Athabascaella playfordii (Martin, 1984) Martin & Yin Leiming, 1988

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8x1-h1e-6jd
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kqq-xxn-rsh
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tt0-zqt-evl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jer-q0n-ylz
title: Halysites catenularius (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yq4-6eq-c6j
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ahz-8mp-0q2
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/syl-lxp-2my
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0rd-gp8-853
title: Tremataspis mammillata Patten, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7ky-2qa-nxf
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.qtzd97
title: Occurrence Download

description: A dataset containing 5474342 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Orobanchaceae, Lennoaceae, Cuscuta L., Mitrastemonaceae, Santalales, Cytinaceae, Krameriaceae, Rafflesiaceae, Apodanthaceae, Cynomoriaceae, Hydnoraceae, Cassytha L.)"
 ]
}

 The dataset includes 5474342 records from 5624 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009099-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29716446
title: ACRONYM: Augmented Degree Corrected, Community Reticulated Organized Network Yielding Model

description: Modeling networks can serve as a means of summarizing high-dimensional complex systems. Adapting an approach devised for dense, weighted networks, we propose a new method for generating and estimating unweighted networks. This approach can describe a broader class of potential networks than existing models, including those where nodes in different subnetworks connect to one another via various attachment mechanisms, inducing flexible and varied community structures. While unweighted edges provide less resolution than continuous weights, restricting to the binary case permits the use of likelihood-based estimation techniques, which can improve estimation of nodal features. The extra flexibility may contribute a different understanding of network generating structures, particularly for networks with heterogeneous densities in different regions. Supplemental appendices and code for this article are available online.
DOI: 10.6084/m9.figshare.29716446.v1
title: ACRONYM: Augmented degree corrected, Community Reticulated Organized Network Yielding Model

description: Modeling networks can serve as a means of summarizing high-dimensional complex systems. Adapting an approach devised for dense, weighted networks, we propose a new method for generating and estimating unweighted networks. This approach can describe a broader class of potential networks than existing models, including those where nodes in different subnetworks connect to one another via various attachment mechanisms, inducing flexible and varied community structures. While unweighted edges provide less resolution than continuous weights, restricting to the binary case permits the use of likelihood-based estimation techniques, which can improve estimation of nodal features. The extra flexibility may contribute a different understanding of network generating structures, particularly for networks with heterogeneous densities in different regions. Supplemental appendices and code for this article are available online.
DOI: 10.6084/m9.figshare.29716446.v2
title: ACRONYM: Augmented Degree Corrected, Community Reticulated Organized Network Yielding Model

description: Modeling networks can serve as a means of summarizing high-dimensional complex systems. Adapting an approach devised for dense, weighted networks, we propose a new method for generating and estimating unweighted networks. This approach can describe a broader class of potential networks than existing models, including those where nodes in different subnetworks connect to one another via various attachment mechanisms, inducing flexible and varied community structures. While unweighted edges provide less resolution than continuous weights, restricting to the binary case permits the use of likelihood-based estimation techniques, which can improve estimation of nodal features. The extra flexibility may contribute a different understanding of network generating structures, particularly for networks with heterogeneous densities in different regions. Supplemental appendices and code for this article are available online.
DOI: 10.5281/zenodo.17290145
title: Leadership, Collaboration and Involvement in four IoT Standards' Ecosystems (Reproduction package)

description: Leadership, Collaboration and Involvement in four IoT Standards’ Ecosystems

Reproduction Package

This is the reproduction package of our paper submitted to the Journal of Systems and Software. The reproduction package contains over 30,000 files with over 1,3Gb of information. In addition to the raw and processed information, we provide the scripts used to retrieve, clean and analyze the data.

We use GrimoireLab Perceval for the retrieval and gambit for disambiguation.

A. Raw data sources (as retrieved with Perceval)

Gzipped JSON files obtained by running Perceval on repositories from the four ecosystems under study.

Per repository, we have three JSON files: one for commits, another for pull requests and a third one for issues.

B. Raw data sources (as retrieved from the GitHub API)

Repository meta-information obtained by mining for repositories from the four ecosystems under study.

Per repository, a JSON file is given, with metainformation such as owner, license, among others.

C. Python scripts

Python scripts used for the analysis of the ecosystems.

In particular the scripts do the following:



analyze-authors-jsons.py: Prints information on the ecosystems and returns several CSV files for further analysis.

analyze-jsons.py: Returns a CSV with information on commits, issues and pull-requests for the repositories.

analyze-projects-csv.py:

get_*_projects.py: where * is the name of the ecosystem (coap, lwm2m, nb-iot, zigbee). Calls the GitHub API to obtain meta-data on repositories from the ecosystem (and store them in the repos-info subdirectory, see above)

get_github_repo_information.py: Extracts information from the JSONs retrieved from the GitHub API. Requires GitHub API Token

get_licenses.py: Extracs license information from the GitHub API retrieved JSONs

github-open-iterate.py: Calls github-open-with-error-log.py iteratively.

github-open-with-error-log.py: Calls Perceval to retrieve JSONs with commit, issue and pull request data from repositories. Requires GitHub tokens and Perceval.

git-retrieve-log.py: Calls perceval to retrieve commit log information from repositories.


D. Companies information

Company information and scripts

E. Other files

Other files used for the analysis of the ecosystems.

In particular the files do the following:



run.sh: Obtains the list of repositories related to the standard

github-repos-*-date-number.json: Result of run.sh. Repositories related to the * ecosystem (coap, lwm2m, nb-iot, zibgee)

projects.csv: CSV with information on the repositories under study
DOI: 10.5281/zenodo.17290146
title: Leadership, Collaboration and Involvement in four IoT Standards' Ecosystems (Reproduction package)

description: Leadership, Collaboration and Involvement in four IoT Standards’ Ecosystems

Reproduction Package

This is the reproduction package of our paper submitted to the Journal of Systems and Software. The reproduction package contains over 30,000 files with over 1,3Gb of information. In addition to the raw and processed information, we provide the scripts used to retrieve, clean and analyze the data.

We use GrimoireLab Perceval for the retrieval and gambit for disambiguation.

A. Raw data sources (as retrieved with Perceval)

Gzipped JSON files obtained by running Perceval on repositories from the four ecosystems under study.

Per repository, we have three JSON files: one for commits, another for pull requests and a third one for issues.

B. Raw data sources (as retrieved from the GitHub API)

Repository meta-information obtained by mining for repositories from the four ecosystems under study.

Per repository, a JSON file is given, with metainformation such as owner, license, among others.

C. Python scripts

Python scripts used for the analysis of the ecosystems.

In particular the scripts do the following:



analyze-authors-jsons.py: Prints information on the ecosystems and returns several CSV files for further analysis.

analyze-jsons.py: Returns a CSV with information on commits, issues and pull-requests for the repositories.

analyze-projects-csv.py:

get_*_projects.py: where * is the name of the ecosystem (coap, lwm2m, nb-iot, zigbee). Calls the GitHub API to obtain meta-data on repositories from the ecosystem (and store them in the repos-info subdirectory, see above)

get_github_repo_information.py: Extracts information from the JSONs retrieved from the GitHub API. Requires GitHub API Token

get_licenses.py: Extracs license information from the GitHub API retrieved JSONs

github-open-iterate.py: Calls github-open-with-error-log.py iteratively.

github-open-with-error-log.py: Calls Perceval to retrieve JSONs with commit, issue and pull request data from repositories. Requires GitHub tokens and Perceval.

git-retrieve-log.py: Calls perceval to retrieve commit log information from repositories.


D. Companies information

Company information and scripts

E. Other files

Other files used for the analysis of the ecosystems.

In particular the files do the following:



run.sh: Obtains the list of repositories related to the standard

github-repos-*-date-number.json: Result of run.sh. Repositories related to the * ecosystem (coap, lwm2m, nb-iot, zibgee)

projects.csv: CSV with information on the repositories under study
DOI: 10.13145/bacdive21690.20230509.8.1
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive21690.20251217.10
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0089148.10fu
title: SH0089148.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive21691.20230509.8.1
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive21691.20251217.10
title: Sorangium cellulosum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.