cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.52d4f/4
title: Generation 3

description: Each row represents sequential mass measurements for a given individual. The column headings, in order, represent the beetled identification number (ID), its sex (Sex), the sire that produced it (Sire), the dam that produced it (DAM), the date of its egg hatch (HatchDate), the date of the first measurement (Date1), the age at first measurement (DSH1), the mass at first measurement (Mass1), the date of second measurement (Date2), etc. After larval measurements, information about the pupal and adult stages is listed in columns to the right: date of pupation (PubDate), age at pupation (DTP), pupal mass (PupMass), date of eclosion to the adult stage (EcDate), and age at eclosion to the adult stage (DTE). Any individuals who do not have a pupal mass measurement did not survive to pupation, and individuals without an eclosion date (but with a pupal mass measure) survived to pupation but not to eclosion.
DOI: 10.5061/dryad.52d4f/5
title: Geneartion 4

description: Each row represents sequential mass measurements for a given individual. The column headings, in order, represent the beetled identification number (ID), its sex (Sex), the sire that produced it (Sire), the dam that produced it (DAM), the date of its egg hatch (HatchDate), the date of the first measurement (Date1), the age at first measurement (DSH1), the mass at first measurement (Mass1), the date of second measurement (Date2), etc. After larval measurements, information about the pupal and adult stages is listed in columns to the right: date of pupation (PubDate), age at pupation (DTP), pupal mass (PupMass), date of eclosion to the adult stage (EcDate), and age at eclosion to the adult stage (DTE). Any individuals who do not have a pupal mass measurement did not survive to pupation, and individuals without an eclosion date (but with a pupal mass measure) survived to pupation but not to eclosion.
DOI: 10.5061/dryad.52d4f/6
title: Generation 4.2 (Gen 4 repeated)

description: Each row represents sequential mass measurements for a given individual. The column headings, in order, represent the beetled identification number (ID), its sex (Sex), the sire that produced it (Sire), the dam that produced it (DAM), the date of its egg hatch (HatchDate), the date of the first measurement (Date1), the age at first measurement (DSH1), the mass at first measurement (Mass1), the date of second measurement (Date2), etc. After larval measurements, information about the pupal and adult stages is listed in columns to the right: date of pupation (PubDate), age at pupation (DTP), pupal mass (PupMass), date of eclosion to the adult stage (EcDate), and age at eclosion to the adult stage (DTE). Any individuals who do not have a pupal mass measurement did not survive to pupation, and individuals without an eclosion date (but with a pupal mass measure) survived to pupation but not to eclosion.
DOI: 10.5061/dryad.5bd66/1
title: Life cycle lengths and definitive host trophic levels for parasitic nematodes
DOI: 10.5061/dryad.5bd66/2
title: Life cycle lengths and definitive host trophic levels for parasitic nematodes in OUCH format
DOI: 10.5061/dryad.5bd66/3
title: Phylogenetic tree for parasitic nematodes used for regression analyses
DOI: 10.5061/dryad.5bd66/4
title: Phylogenetic tree for parasitic nematodes used to compare transmission strategies
DOI: 10.5061/dryad.5rc47/1
title: Competitive fitness costs of antibiotic resistance mutations

description: Data file contains measures of competitive fitness values associated with a given antibiotic resistance mutation. Other metrics of the resistance mutation are included, such as strain, antibiotic, technique, MIC if available, etc. See read me file for coding for technique to derive and the relevant citations.
DOI: 10.5061/dryad.8c9s1/3
title: T1B_Toll like receptor sequences_allspecies

description: contains all TLR 1B sequences for all individuals across all three species as analysed in our study.
DOI: 10.5061/dryad.8c9s1/4
title: T4_Toll like receptor sequences_allspecies

description: contains all TLR 4 sequences for all individuals across all three species as analysed in our study.
DOI: 10.5061/dryad.8c9s1/5
title: T5_Toll like receptor sequences_allspecies

description: contains all TLR 5 sequences for all individuals across all three species as analysed in our study.
DOI: 10.5061/dryad.8c9s1/6
title: T21_Toll like receptor sequences_allspecies

description: contains all TLR 21 sequences for all individuals across all three species as analysed in our study.
DOI: 10.5061/dryad.8c9s1/7
title: MSvar evaluation Rcode

description: The R code we used to assess the output from MSvar simulations
DOI: 10.5061/dryad.8c9s1/8
title: hpars_output_input_MSVar evaluation R

description: the output (hpars file) which one receives after each MSvar simulation. This is the file you need as input for the assessment in R the code for which is equally uploaded here.
DOI: 10.5061/dryad.bt348/1
title: Archie_social_connectedness

description: Data to estimate the correlation between adult female social connectedness and survival.
DOI: 10.5061/dryad.f80bh/1
title: ARSA.CFUdat

description: in vivo survival of AMP-resistant S. aureus
DOI: 10.5061/dryad.f80bh/2
title: ARSA.survDat.21d

description: Survival of T. molitor infected with AMP-resistant S. aureus
DOI: 10.5061/dryad.f80bh/3
title: CRdat.HM.forDryad

description: 6h MIC of antimicrobial resistant S. aureus
DOI: 10.5061/dryad.fm573/1
title: Input and output files

description: This zipped file contains all input files for simulations, all input files for the bat dataset, and output files from the analyses of simulated data and the bat data
DOI: 10.5061/dryad.j2h11/1
title: Nucleotide sequence files used for tree-based analyses.

description: Unaligned nucleotide sequence files used for tree-based analyses in the five mammalian orders (Artiodactyla, Carnivora, Pholidota, Primates, Rodentia) represented by more than one species.
DOI: 10.5061/dryad.m9j80/1
title: intake.rate.protocols.2008

description: This file contains the raw data of the intake rate protocols carried out in 2008
DOI: 10.5061/dryad.m9j80/2
title: knot.positions.2007

description: This file contains the positions of the individual knots mapped in 2007
DOI: 10.5061/dryad.m9j80/3
title: raw.prey.densities.2007

description: This file contains the available densities of Loripes and Dosinia per station in 2007
DOI: 10.5061/dryad.m9j80/4
title: raw.prey.densities.2008

description: This file contains the available densities of Loripes and Dosinia per station in 2008
DOI: 10.5061/dryad.nq36d/1
title: R_script_ for_Legendre_polynomial

description: R script for Legendre orthogonal polynomial analysis of growth and allometric curve.
DOI: 10.5061/dryad.ns7gp/1
title: Bayesian inference tree for the cytb fragment

description: Data Set of Figure 2 - Bayesian inference tree for the cytb fragment showing the phylogenetic relationship of all endangered North African ungulates and the domestic species. Posterior probabilities of major nodes are indicated. Tragulus napu was used as outgroup.
DOI: 10.5061/dryad.qd3pd/1
title: SM1 - Temporal banding taxonomic classifications for birds and mammals

description: Taxonomic hierarchies for birds and mammals, produced by temporal banding of dated phylogenies with corresponding traditional taxonomies.
DOI: 10.5061/dryad.qd3pd/2
title: SM2 - Taxonomic error for bird and mammal clades

description: Taxonomic error scores for traditional bird and mammal taxonomic order, families and genera.
DOI: 10.5061/dryad.qd3pd/3
title: SM3 - Results for alternative bird analysis

description: Summary results for alternative versions of bird temporal banding classification analysis.
DOI: 10.5061/dryad.qd3pd/4
title: SM4 R code and example data

description: Example code and data for applying temporal banding to a phylogeny and calculating standardised error scores. See manuscript for references to original data sources.
DOI: 10.5061/dryad.t173v/7
title: VNTR Structure project

description: This file contains the STRUCTURE project generated using the repeats of the sequenced VNTRs. Xam isolates were assigned into genetic populations using a clustering algorithm based on Bayesian model in STRUCTURE 2.3.3 without prior population information. Genetic clusters of the isolates were generated with independent allele frequencies and five thousand replicates during burning period and 100.000 Monte Carlo Markov chain (MCMC) iterations
DOI: 10.5061/dryad.t173v/8
title: AFLP Structure Project

description: This file contains the STRUCTURE project generated using the AFLP data. Xam isolates were assigned into genetic populations using a clustering algorithm based on Bayesian model in STRUCTURE 2.3.3 without prior population information. Genetic clusters of the isolates were generated with independent allele frequencies and five thousand replicates during burning period and 100.000 Monte Carlo Markov chain (MCMC) iterations.
DOI: 10.7925/drs1.ucdlib_32396
title: 29 Westmoreland Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 5 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 8546
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32399
title: Westmoreland Street 32

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Frame structure, 5 levels above ground, constructed 1912.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32402
title: Westmoreland Street 37-39

description: Consists of 2 orthorectified images of the structure. The orthorectified images have been derived from one or more photographic image that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and other image layers have been extracted and saved in TIFF image files, as well as JPEG files in various resolutions to facilitate inspection.
description: Frame structure, 6 levels above ground, constructed 2001.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32406
title: Westmoreland Street 40

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Stone cladding structure, 4 levels above ground, constructed 1875.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32409
title: 1-3 Wicklow Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32412
title: 4-5 Wicklow Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32415
title: 6-8 Wicklow Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.0d3v5/1
title: ZimBR_Dyrad_Jul2014
DOI: 10.5061/dryad.1642b/1
title: fMRI_Data_From_A_Finger_Tapping_Run_Subject_01-20

description: The data were acquired from a finger tapping run in an rtfMRI experiment, which consisted of eight on-going runs. Twenty volunteers (age 22.3 ± 1.6, 8 females) participated in the experiment, which was approved by the Institutional Review Board (IRB) of the State Key Laboratory of Cognitive Neuroscience and Learning in Beijing Normal University; all of the subjects signed informed consent prior to scanning. The run, which lasted 4.5 min, consisted of five rest blocks and four task blocks, of which each block lasted 30 s. During the rest blocks, a text cue “REST” was shown in the center of the screen and the subjects were instructed to take a rest. In the task blocks, a text cue “PUSH” was shown, and the subjects were instructed to tap their right-hand fingers.
DOI: 10.5061/dryad.288j7/2
title: Datasets
DOI: 10.5061/dryad.288j7/3
title: R code

description: This R file contains selected examples necessary to reproduce our analyses using the accompanied data set. The file is kept as readable as possible by leaving out repleted codes. This code has been written by Tsukushi Kamiya, who can be contacted via philophthalmus-at-gmail-dot-com.The file consists of the five following sections:# 1. Main analyses. # 2. DIC-based model selection. # 3. Unconditional estimates. # 4. Forest plot. # 5. Tests for publication bias.
DOI: 10.5061/dryad.288j7/4
title: Tree file

description: The file contains a topological tree of species included in our analyses
DOI: 10.5061/dryad.30qt0/5
title: Sex-Biased Dispersal R Code

description: R Code for: 1)  Sex-Biased Dispersal Analysis, and 2) Simulations to Correct Observed Sex Bias for Detectability
DOI: 10.5061/dryad.30qt0/6
title: Monitored Study Bounds Data

description: Coordinates to Construct Polygon delineating monitored spatial area for Dispersal Bias Correction Simulations R Script
DOI: 10.5061/dryad.3m0rf/1
title: Standish et al. JEcol-2014-0252R1
DOI: 10.5061/dryad.3v0p8/1
title: Savanna tree height class distribution under different fire management histories

description: Tree height class and species data collected with airborne LiDAR and imaging spectroscopy across two savanna hill slopes with different fire histories in Kruger National Park, South Africa. Tree heights are in meters. Tree IDs are a random selection of 1000 individuals per species per fire history treatment. Airborne data was collected in April 2008.
DOI: 10.5061/dryad.8497b/1
title: MLSMLVAdata
DOI: 10.5061/dryad.94nk8/1
title: Data used for the analysis of visitation and visitor behavior to the website Canopy in the Clouds

description: The file Goldsmithetal_datafile.csv contains the data used for the analysis of visitation and visitor behavior to the website Canopy in the Clouds (www.canopyintheclouds.com) associated with Goldsmith et al. (2014) in Ecosphere. The file Goldsmithetal_readme.txt contains the relevant description, permissions and contacts.
DOI: 10.5061/dryad.9p670/1
title: Transplant experiment data 2011-2013

description: Transplant experiment data 2011-2013
DOI: 10.5061/dryad.fm573/2
title: SimuMigEst

description: The simulation package containing all of the programs and associated files needed to run the simulations
DOI: 10.5061/dryad.g4d30/1
title: Life history and genotypic data used in this study

description: Life history traits were measured under common-garden conditions on a set of families stemming from 14 populations of the freshwater snail Lymnaea stagnalis. Each family is identified in the file as G0 (wild-caught parent). A subset of laboratory-born G1s were followed from birth to adulthood. Shell size data were used to estimate growth parameters of the Gompertz model.Trait variance, within and among populations, was used to infer quantitative genetic differentiation (QST). Genotypic data were obtained from 12 microsatellite markers and used to infer population neutral differentiation (FST).
DOI: 10.5061/dryad.gn376/1
title: Supplementary Data

description: This file contains the scripts developed as well as data sets necessary to reproduce all analyses described in the article, together with extra analyses and the R scripts that produce the figures in the manuscript and Supplementary Text. A README file with more information is included.
DOI: 10.5061/dryad.gn376/2
title: Supplementary Text

description: This is the supplementary text describing additional analyses and figures. All analyses reported here can be reproduced by downloading the accompanying Supplementary Data.
DOI: 10.5061/dryad.gv682/1
title: Angert et al. Desert Annuals Data

description: Phenotypic measurements of relative growth rate (RGR, measured based on change in leaf area per day) and water-use efficiency (as measured by carbon isotope discrimination, Delta, in ppm) for winter annual plants grown in a greenhouse common garden at Colorado State University. Note that Delta is negatively related to water-use efficiency. Design includes replicate individuals of up to 30 maternal families from each of 4-5 populations per each of 4 species. Species codes: STMI = Stylocline micropoides, PERE = Pectocarya recurvata, ERTE = Erodium texanum, ERLA = Eriophyllum lanosum. Population codes: TUMH = Tumamoc Hill, AZ; OPNM = Organ Pipe National Monument, AZ; SDNM = Sonoran Desert National Monument, AZ; SENT = Sentinel, AZ; RINC = Rincon Mountains, AZ; CALI = Californian populations (see manuscript for exact locations for each species). Climatic values for winter maximum temperature (Tmax_wt), winter minimum temperature (Tmin_wt), and winter precipitation (PPT_wt) were estimated based on latitude and longitude using the program ClimateWNA.
DOI: 10.5061/dryad.hq8k8/1
title: Data underlying the conclusions made in the paper

description: Monitoring and experimental data.
DOI: 10.5061/dryad.j68v0/1
title: Dryad_NRe_cells_and_histology
DOI: 10.5061/dryad.m663t/1
title: Experimental Chamber Conditions

description: Growth chamber conditions used to simulate the native photoperiod and temperature fluctuations across the growing season for both the Sweden and Italy populations
DOI: 10.5061/dryad.m663t/2
title: Flowering Time for all RILs and parents

description: One tab contains the mean flowering time for all RILs in the experiment in both conditions. The number of replicates that survived to flower is also indicated. Another tab gives the mean flowering time for both parents in both conditions.
DOI: 10.5061/dryad.m663t/3
title: Genotype Data

description: This data file is formatted for use in R/qtl
DOI: 10.5061/dryad.m863j/1
title: Liocosmius untrimmed data

description: This file contains all of the untrimmed DNA sequence data gathered for the paper.  It is formatted as a NEXUS file, and is compatible with Mesquite version 2.75
DOI: 10.5061/dryad.m863j/2
title: Liocosmius data with ML trees

description: This file contains all of the trimmed and aligned DNA sequence data that were analyzed for this paper, and the maximum likelihood trees and the ML bootstrap trees.  It is formatted as a NEXUS file, and is compatible with Mesquite version 2.75
DOI: 10.5061/dryad.md103/1
title: Brazzola et al. C. albellus

description: Mortality, time to hatching (day degrees), and hatchling body lenght (mm) and yolk sac volume (mm3) 1 and 10 days after hatching of whitefish (C. albellus) raised singly at one of several different concentrations of 17alpha-etinyloestradiol (EE2) or Fluconazole
DOI: 10.5061/dryad.md103/2
title: Brazzola et al. C. palaea

description: Mortality and hatching time (day degrees) of whitefish (C. palaea) raised singly at one of different concentrations of 17alpha-ethinyloestradiol (EE2)
DOI: 10.5061/dryad.mq7n0/2
title: 454 raw sequences of the MHC class II DRB exon 2 gene from rodents - Run 1

description: This FASTA file contains 91,467 raw sequences producedusing 454 GS-FLX pyrosequencing (first run). The 864 multiplexed amplicons were tagged using both forward and reverse primers. The list of the 864 multiplexed samples and associated tags are provided in the following file: 454_Reads_DRB_Asia_Run1.csv.
DOI: 10.5061/dryad.mq7n0/3
title: 454 quality scores of the raw sequences of the MHC class II DRB exon 2 gene from rodents - Run 1

description: This file contains the quality scores for the 91,467 rawsequences produced using 454 GS-FLX pyrosequencing (first run). The 864 multiplexed amplicons were tagged using both forward and reverse primers. The list of the 864 multiplexed samples and associated tags are provided in the following file: 454_Reads_DRB_Asia_Run1.csv.
DOI: 10.5061/dryad.mq7n0/5
title: Information concerning the samples multiplexed in the 454 Run 1

description: This SESAME software formatted file contains the samplenames, the forward and reverse tag sequences, the forward and reverse primer sequences, the gene name, the species name, the population name and the ploidy level for each of the 864 samples multiplexed in the 454 pyrosequencing run 1.