cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/c77e7e0572c427dbacda40ce1467e0bc
title: California Blue Oak reproduction and recruitment, Sierra Foothills, 2005-2010

description: This data archive contributes to the study of blue oak conservation by quantifying reproductive success (numbers of new seedlings and their sizes) and survival and growth of the younger life stages (seedlings and saplings), and by exploring how the timing of grazing, topographical variables, and rainfall limit reproduction, growth, and survival for these life stages, helping to identify potential management and restoration strategies to enhance the population viability of blue oak. We followed a population of blue oak (Quercus douglasii) seedlings and saplings in the Sierra Nevada foothills, measuring adult seed production and initial seedling recruitment (number and size of new seedlings), seedling growth and survival, seedling recruitment to saplings (growing greater than 10 cm in height), and sapling growth and survival. We tested the impacts on these demographic processes of timing and intensity of grazing, light availability, water availability, and individual size. We published our analysis of these data as part of the 8th Oak Woodland Symposium. This data archive contains the underlying data for our analysis plus some data we did not include in our analysis (residual dry matter, photosynthetically active radiation, percent exotic/native cover), including raw data and R and Perl scripts used to format them for analysis, and additional information not included in the conference proceedings.
DOI: 10.5281/zenodo.7701760
title: Archäologische Maßnahme Traismauer Pfarrgarten: Anthropologische Basisdaten

description: The archaeological measure described here was triggered by infrastructure renewal work in Traismaurer city center, which is mainly under monument protection and since 2021 also represents an integrated component of the UNESCO World Heritage Site "Danube Limes." The archaeological excavation was carried out from 06.04.2022 to 02.05.2022 by the company ARDIG - Archäologischer Dienst GesmbH on behalf of EVN AG, the construction work in the investigation area was implemented by Leyrer + Graf Baugesellschaft m.b.H. All ground interventions were implemented and documented by the applicable guidelines of the Federal Monuments Authority (BDA). Still, complex as well as archaeologically relevant finds and features were not encountered during the activities. In the first step the construction activities were accompanied archaeologically in the parish garden area and the future southern pipeline route in the Stadtgraben and Kirchengasse within the framework of an excavation; in the second step, the same procedure took place at Kirchenplatz square. As shown by the excavations of the later 2010s in the Traismaurer very city center (the area of today's church square and the Roman camp commandant's office [principia]), a densely occupied burial zone was uncovered, whereby in the investigation area de facto no undisturbed burials were observed. Also, the excavations from the 2nd half of the 20th century showed that, in general, in certain sections, a massive recent taphonomic transformation of the archaeological features due to construction activities at the church site is to be expected. The excavations dealt with here were mostly in areas used for laying pipes since 1969, so only massively disturbed features were excavated, in some cases with highly dispersed human remains. Especially regarding the bioarchaeological find material, it is a matter of (multiple) dislocated deposits. Only the findings from a few individual stratigraphic units indicate the skeletal remains of individual inhumations, which, despite that, are not detectable from the results - burial pits or separate grave fills could not be found. Accordingly, only artifacts were encountered that must be addressed as "tertiary refuse" and are therefore directly integrated into the deposited matrix as (presumably medieval) background components but cannot be further meaningfully interpreted due to their dislocation. In the parish garden, on the other hand, various medieval to recent foundation wall sections of the parish garden wall and structural elements of a cellar room could be uncovered in the area of investigation. In the area of Kirchengasse and the Stadtgraben, recent pipe installations were also identified.
description: GER: Bundesdenkmalamt-Verwaltungsdaten: Maßnahmennummer: 19166.22.04 Maßnahmenbezeichnung: Traismauer Pfarrgarten Durchführungsjahr: 2022 -- EN: Federal Monuments Authority administrative record: Project number: 19166.22.04 Title of project: Traismauer Pfarrgarten Year of implementation: 2022
DOI: 10.5281/zenodo.7701759
title: Archäologische Maßnahme Traismauer Pfarrgarten: Anthropologische Basisdaten

description: The archaeological measure described here was triggered by infrastructure renewal work in Traismaurer city center, which is mainly under monument protection and since 2021 also represents an integrated component of the UNESCO World Heritage Site "Danube Limes." The archaeological excavation was carried out from 06.04.2022 to 02.05.2022 by the company ARDIG - Archäologischer Dienst GesmbH on behalf of EVN AG, the construction work in the investigation area was implemented by Leyrer + Graf Baugesellschaft m.b.H. All ground interventions were implemented and documented by the applicable guidelines of the Federal Monuments Authority (BDA). Still, complex as well as archaeologically relevant finds and features were not encountered during the activities. In the first step the construction activities were accompanied archaeologically in the parish garden area and the future southern pipeline route in the Stadtgraben and Kirchengasse within the framework of an excavation; in the second step, the same procedure took place at Kirchenplatz square. As shown by the excavations of the later 2010s in the Traismaurer very city center (the area of today's church square and the Roman camp commandant's office [principia]), a densely occupied burial zone was uncovered, whereby in the investigation area de facto no undisturbed burials were observed. Also, the excavations from the 2nd half of the 20th century showed that, in general, in certain sections, a massive recent taphonomic transformation of the archaeological features due to construction activities at the church site is to be expected. The excavations dealt with here were mostly in areas used for laying pipes since 1969, so only massively disturbed features were excavated, in some cases with highly dispersed human remains. Especially regarding the bioarchaeological find material, it is a matter of (multiple) dislocated deposits. Only the findings from a few individual stratigraphic units indicate the skeletal remains of individual inhumations, which, despite that, are not detectable from the results - burial pits or separate grave fills could not be found. Accordingly, only artifacts were encountered that must be addressed as "tertiary refuse" and are therefore directly integrated into the deposited matrix as (presumably medieval) background components but cannot be further meaningfully interpreted due to their dislocation. In the parish garden, on the other hand, various medieval to recent foundation wall sections of the parish garden wall and structural elements of a cellar room could be uncovered in the area of investigation. In the area of Kirchengasse and the Stadtgraben, recent pipe installations were also identified.
description: GER: Bundesdenkmalamt-Verwaltungsdaten: Maßnahmennummer: 19166.22.04 Maßnahmenbezeichnung: Traismauer Pfarrgarten Durchführungsjahr: 2022 -- EN: Federal Monuments Authority administrative record: Project number: 19166.22.04 Title of project: Traismauer Pfarrgarten Year of implementation: 2022
DOI: 10.6084/m9.figshare.21775517
title: Nitrilase molecular clock chronograms

description: Sample chronograms for nitrilase molecular clocks with various calibration subsets
DOI: 10.6084/m9.figshare.21775517.v1
title: Nitrilase molecular clock chronograms

description: Sample chronograms for nitrilase molecular clocks with various calibration subsets
DOI: 10.6084/m9.figshare.21775028
title: PHYLIP name key

description: Key linking FASTA file names to PHYLIP file names for nitrilase alignment and treefiles
DOI: 10.6084/m9.figshare.21775028.v1
title: PHYLIP name key

description: Key linking FASTA file names to PHYLIP file names for nitrilase alignment and treefiles
DOI: 10.6084/m9.figshare.21775025
title: Cyanide-reducing enzyme treefiles

description: Treefiles (newick and nexus) for cyanide-reducing enzymes
DOI: 10.6084/m9.figshare.21775025.v1
title: Cyanide-reducing enzyme treefiles

description: Treefiles (newick and nexus) for cyanide-reducing enzymes
DOI: 10.6084/m9.figshare.21774740
title: Cyanide-reducing enzyme alignments

description: Alignment files for microbial cyanide-reducing enzymes
DOI: 10.6084/m9.figshare.21774740.v1
title: Cyanide-reducing enzyme alignments

description: Alignment files for microbial cyanide-reducing enzymes
DOI: 10.3886/e186381
title: German Twitter COVID-19 vaccine posts analysed

description: This data contains two files.<br>1. topics-date.xlsx include the results of the LDA <br>2. analysed_posts_vader.xlsx include the results of the vader sentiment analysis
DOI: 10.5066/p9lhknh3
title: Upper Midwest Water Science Center Groundwater Model Archive Index v1.0 2023

description: This vector geospatial dataset contains bounding polygons that visualize the domain of archived groundwater flow models published by the Upper Midwest Water Science Center and attributes pertaining to the associated publication (citation, year of publication, authors, report ID, publication URL), model construction details, and a URL for publicly available model archives when available or a directory pathway for internal model archives. The index currently depicts 115 groundwater model domains across Michigan, Minnesota, and Wisconsin from publications dating back to 1985. Separately published groundwater transport models are not included in this dataset.
DOI: 10.25345/c5f766h6b
title: MassIVE MSV000091479 - Quantification of adaptive immune responses against protein binding interfaces in the streptococcal M1 protein
title: The work used the M1 protein from streptococcus pyogenes as a model system. Streptococcus pyogenes (or Group A streptococcus, GAS) is a Gram-positive bacterium and a significant human pathogen that forms extensive protein interaction networks with human host proteins. Due to the high frequency of streptococcal infections, most humans have been exposed to S. pyogenes and have circulating antibodies against streptococcal antigens making it challenging to find completely naive human subjects. The presence of an existing repertoire of circulating antibodies complicates investigations focusing on the interplay between polyclonal antibody mixtures and host-pathogen protein-protein interactions. Here, we addressed this challenge by immunization of naive mice with M1 protein. The work is of relevance for as it provides new information of the molecular mechanisms behind immunodominance and subdominance which is important to understand pathogen evasion of antibody responses and for the future design vaccines that elicit antibodies against protective, evolutionarily conserved antigenic sites.
DOI: 10.5517/ccdc.csd.cc29jb17
title: CCDC 2130848: Experimental Crystal Structure Determination

description: Related Article: Fang Fang, Haolin Zheng, Weipeng Li, Guojiang Mao, Shanping Chen, Guo‐Jun Deng|2022|Adv.Synth.Catal.|364|2190|doi:10.1002/adsc.202200241
description: Related Article: Fang Fang, Haolin Zheng, Guojiang Mao, Shanping Chen, Guo-Jun Deng|2022|J.Org.Chem.|87|6052|doi:10.1021/acs.joc.2c00315
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bvhvk
title: CCDC 2170429: Experimental Crystal Structure Determination

description: Related Article: Priyanka Kumari, Abdul Kareem, Pampa Jhariat, Sellappan Senthilkumar, Tamas Panda|2023|Inorg.Chem.|62|3457|doi:10.1021/acs.inorgchem.2c03609
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21804462
title: resistance_data.zip

description: Data for assessing resistance to Ceratocystis wilt of ohia
DOI: 10.6084/m9.figshare.21804462.v1
title: resistance_data.zip

description: Data for assessing resistance to Ceratocystis wilt of ohia
DOI: 10.6084/m9.figshare.22227610
title: LIP Metagenome Prokka Annotation Output

description: Output files from the annotation of assembled metagenomic contigs from the LIP metagenome using Prokka. <br> Protein fasta file (LIP.faa) submitted to GhostKOALA for further annotation against KEGG database.
DOI: 10.6084/m9.figshare.22227610.v1
title: LIP Metagenome Prokka Annotation Output

description: Output files from the annotation of assembled metagenomic contigs from the LIP metagenome using Prokka. <br> Protein fasta file (LIP.faa) submitted to GhostKOALA for further annotation against KEGG database.
DOI: 10.5281/zenodo.7628993
title: Factors Affecting Managerial Decision-Making

description: Coded segments - factors affecting managerial decision-making (IEEE Access paper: On Adopting Software Analytics for Managerial Decision-Making: A Practitioner's Perspective).
DOI: 10.5281/zenodo.7628994
title: Factors Affecting Managerial Decision-Making

description: Coded segments - factors affecting managerial decision-making (IEEE Access paper: On Adopting Software Analytics for Managerial Decision-Making: A Practitioner's Perspective).
DOI: 10.5281/zenodo.7730529
title: EMDB - 2660

description: Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine. This is a copy of the volume map EMD-2660 available for download at https://www.ebi.ac.uk/emdb/EMD-2660
DOI: 10.5281/zenodo.7730530
title: EMDB - 2660

description: Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine. This is a copy of the volume map EMD-2660 available for download at https://www.ebi.ac.uk/emdb/EMD-2660
DOI: 10.6084/m9.figshare.11523105
title: Data from Stier et al. 2020 "Listen to the birds: the illegal diet pill DNP might kill you on the long run"

description: Datasets used in Stier et al. 2020 (Listen to the birds: the illegal diet pill DNP might kill you on the long run). Each .csv file contains information on data presented in Fig. 1<br>
DOI: 10.6084/m9.figshare.11523105.v1
title: Data from Stier et al. 2020 "Listen to the birds: the illegal diet pill DNP might kill you on the long run"

description: Datasets used in Stier et al. 2020 (Listen to the birds: the illegal diet pill DNP might kill you on the long run). Each .csv file contains information on data presented in Fig. 1<br>
DOI: 10.6084/m9.figshare.22266238
title: StressPreconditioningDGRP_GWAoutput.txt

description: <strong>Complete GWA results for stress preconditioning screen</strong>. Alleles are listed with chromosome position, rs ID, and significance. A stress preconditioning screen was performed on 177 strains of the <em>Drosophila </em>Genetics Reference Panel (DGRP) lines. To model preconditioning, we exposed a panel of genetically diverse <em>Drosophila melanogaster</em> to a sublethal heat shock and measured how well the flies survived subsequent exposure to endoplasmic reticulum (ER) stress.
DOI: 10.5281/zenodo.7730528
title: Test Upload

description: Test upload.
description: {"references": ["test reference, 2023"]}
DOI: 10.5281/zenodo.7730527
title: Test Upload

description: Test upload.
description: {"references": ["test reference, 2023"]}
DOI: 10.6084/m9.figshare.22266199.v1
title: Covid_SchoolClosures_tweets.csv

description: Tweets in response to school closures due to Covid-19, scraped from March 2, 2020 to July 31, 2021 based on hashtag #SchoolClosures. 29,230 tweets scraped originally. When you re-hdyrate the tweets, there are likely to be fewer. <br> NOTE: The data set contains Tweet IDs only and needs to be re-hyrdated in order to be useful.
DOI: 10.5281/zenodo.7691586
title: Charge Transport in Water-NaCl Electrolytes with Molecular Dynamics Simulations

description: LAMMPS input-file, and log-files used in "Charge Transport in Water-NaCl Electrolytes with Molecular Dynamics Simulations" DOI: 10.1021/acs.jpcb.2c08047
DOI: 10.5281/zenodo.7691585
title: Charge Transport in Water-NaCl Electrolytes with Molecular Dynamics Simulations

description: LAMMPS input-file, and log-files used in "Charge Transport in Water-NaCl Electrolytes with Molecular Dynamics Simulations" DOI: 10.1021/acs.jpcb.2c08047
DOI: 10.6084/m9.figshare.22266199
title: Twitter Responses to Covid School Closures (March 2020-July 2021)

description: Tweets in response to school closures due to Covid-19, scraped from March 2, 2020 to July 31, 2021 based on hashtag #SchoolClosures. 29,230 tweets scraped originally. When you re-hdyrate the tweets, there are likely to be fewer. <br> NOTE: The data set contains Tweet IDs only and needs to be re-hyrdated in order to be useful.
DOI: 10.6084/m9.figshare.22266199.v3
title: Twitter Responses to Covid School Closures (March 2020-July 2021)

description: Tweets in response to school closures due to Covid-19, scraped from March 2, 2020 to July 31, 2021 based on hashtag #SchoolClosures. 29,230 tweets scraped originally. When you re-hdyrate the tweets, there are likely to be fewer. <br> NOTE: The data set contains Tweet IDs only and needs to be re-hyrdated in order to be useful.
DOI: 10.6084/m9.figshare.22266199.v2
title: Covid #SchoolClosures Tweets

description: Tweets in response to school closures due to Covid-19, scraped from March 2, 2020 to July 31, 2021 based on hashtag #SchoolClosures. 29,230 tweets scraped originally. When you re-hdyrate the tweets, there are likely to be fewer. <br> NOTE: The data set contains Tweet IDs only and needs to be re-hyrdated in order to be useful.
DOI: 10.6073/pasta/5fa36b985f30ee04d4771af2288aedd4
title: SBC LTER: Time series of quarterly NetCDF files of kelp biomass in the canopy from Landsat 5, 7 and 8, since 1984 (ongoing)

description: This data file represents a time series of canopy area of giant kelp, Macrocystis pyrifera, and bull kelp, Nereocystis luetkeana, and canopy biomass of giant kelp derived from Landsat 5 Thematic Mapper (TM), Landsat 7 Enhanced Thematic Mapper Plus (ETM+), Landsat 8 Operational Land Imager (OLI), and Landsat 9 Operational Land Imager 2 satellite imagery, along with relevant metadata. The kelp canopy is composed of the portions of fronds and stipes floating on the surface of the water. Canopy area (m) data are given for individual 30 x 30 meter pixels for all coastal areas of Baja California, Mexico, California, Oregon, and the outer coast of Washington (including offshore islands). Biomass data (wet weight, kg) are given for individual 30 x 30 meter pixels in the coastal areas extending from near Ano Nuevo, CA through the southern range limit in Baja California (including offshore islands), representing the range where giant kelp is the dominant canopy forming species. Data were derived from the three Landsat sensors listed above. Observations are made on a 16 day repeat cycle, for each instrument, but the temporal coverage is irregular because of cloud cover, instrument failure, and the mission length of each sensor (TM: 1984 – 2011, ETM+: 1999 – present, OLI: 2013 – present). Estimates of canopy area are derived from the fractional cover of kelp canopy determined from satellite surface reflectance. Estimates of kelp canopy biomass are derived from the relationship between giant kelp fractional cover determined from satellite surface reflectance and empirical measurements of giant kelp canopy biomass in long-term SBC LTER study plots obtained using SCUBA. The different Landsat sensors were calibrated to each other using simulated Landsat data derived from hyperspectral imagery. Missing data due to the ETM+ scan line corrector error were filled using a synchrony-based gap filling method. Data are organized into a single NetCDF file and contain the quarterly area and biomass means for each Landsat pixel across the three sensors. Relevant metadata such as number of Landsat estimates from which the mean was derived, the number of estimates from each sensor, standard error for each quarterly estimate, spatial coordinates, and date are all included in the file. For assistance with the data, please contact sbclter@msi.ucsb.edu.
DOI: 10.5281/zenodo.7730612
title: DADOS_Direito à Educação e avaliação: tendências temáticas na produção acadêmica_Pesquisa Estado da Arte Direito à Educação 1988-2018

description: Planilha de dados utilizados na elaboração do artigo <strong>Direito à Educação e avaliação: tendências temáticas na produção acadêmica.</strong>
DOI: 10.5281/zenodo.7730611
title: DADOS_Direito à Educação e avaliação: tendências temáticas na produção acadêmica_Pesquisa Estado da Arte Direito à Educação 1988-2018

description: Planilha de dados utilizados na elaboração do artigo <strong>Direito à Educação e avaliação: tendências temáticas na produção acadêmica.</strong>
DOI: 10.25345/c59g5gq1q
title: MassIVE MSV000091480 - Structure of Mnx solved with CryoEM and AlphaFold
title: The structure of Mnx (Bacillus sp.), a manganese biomineralization enzyme complex, was solved by cryoEM with 3.09A density, with further refinement of the solved structure using a model generated using alphafold2-multimer. The complex consists of one MnxG subunit, and a Mnx(E3F3) cap. Supporting ion mobility native MS and surface induced dissociation data for Mnx H340A mutant complex and wild-type (WT) complex confirmed the mutant behaves similarly to WT, with data available in directory 'SynaptG2_NativeMS'. Crosslinking of Mnx H340A and Mnx WT using BS3 crosslinker, followed by reduction and alkylation, trypsin digestion, S-trap clean-up, and data analysis using Merox 2.0 and pLink v 2.3.11 software programs identified several MnxG intraprotein, MnxG-MnxF, MnxG-MnxE, and MnxF-MnxE interprotein crosslinks that helped to further support the solved Mnx complex structure. Raw crosslinking files and fasta files, as well as Merox 2.0 and pLink result files are found in 'Crosslinking_Results'.
DOI: 10.5517/ccdc.csd.cc2c19mc
title: CCDC 2176002: Experimental Crystal Structure Determination

description: Related Article: Daphne S. Cukierman, Carolina B. P. Ligiero, Roberto R. de Avillez, Nicolás A. Rey|2022|J.Chem.Cryst.|53|8|doi:10.1007/s10870-022-00955-z
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc23yftb
title: CCDC 1964712: Experimental Crystal Structure Determination

description: Related Article: Yao Wu, Zi-Hao Jiang, Jin-Yu Lei, Ping Shang, Xuan-Feng Jiang|2023|Cryst.Growth Des.|23|1477|doi:10.1021/acs.cgd.2c01074
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.