cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1184412.10fu
title: SH1184412.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1184417.10fu
title: SH1184417.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.4fbcys
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Boletus fragrans, Lanmaoa fragrans)",
 "Year 1995-2005"
 ]
}

 The dataset includes 81 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062059-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zzvrc
title: Occurrence Download

description: A dataset containing 463 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pristimantis factiosus (Lynch & Rueda-Almonacid, 1998)"
 ]
}

 The dataset includes 463 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013856-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hsbxtg
title: Occurrence Download

description: A dataset containing 3328316 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae)",
 "Country is New Zealand",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 0"
 ]
}

 The dataset includes 3328316 records from 376 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050134-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uy3322
title: Occurrence Download

description: A dataset containing 542 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lasius neglectus Van Loon, Boomsma & Andrasfalvy, 1990"
 ]
}

 The dataset includes 542 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050141-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28102964
title: Additional file 1 of Multiplexed amplicon sequencing reveals the heterogeneous spatial distribution of pyrethroid resistance mutations in Aedes albopictus mosquito populations in southern France

description: Additional file 1.
DOI: 10.6084/m9.figshare.28102964.v1
title: Additional file 1 of Multiplexed amplicon sequencing reveals the heterogeneous spatial distribution of pyrethroid resistance mutations in Aedes albopictus mosquito populations in southern France

description: Additional file 1.
DOI: 10.6084/m9.figshare.28102973.v1
title: Additional file 4 of Multiplexed amplicon sequencing reveals the heterogeneous spatial distribution of pyrethroid resistance mutations in Aedes albopictus mosquito populations in southern France

description: Additional file 4.
DOI: 10.6084/m9.figshare.28102973
title: Additional file 4 of Multiplexed amplicon sequencing reveals the heterogeneous spatial distribution of pyrethroid resistance mutations in Aedes albopictus mosquito populations in southern France

description: Additional file 4.
DOI: 10.6084/m9.figshare.28102979.v1
title: Additional file 6 of Multiplexed amplicon sequencing reveals the heterogeneous spatial distribution of pyrethroid resistance mutations in Aedes albopictus mosquito populations in southern France

description: Additional file 6.
DOI: 10.6084/m9.figshare.28102979
title: Additional file 6 of Multiplexed amplicon sequencing reveals the heterogeneous spatial distribution of pyrethroid resistance mutations in Aedes albopictus mosquito populations in southern France

description: Additional file 6.
DOI: 10.6084/m9.figshare.28103027
title: Additional file 1 of Metagenome-validated combined amplicon sequencing and text mining-based annotations for simultaneous profiling of bacteria and fungi: vaginal microbiota and mycobiota in healthy women

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.28103027.v1
title: Additional file 1 of Metagenome-validated combined amplicon sequencing and text mining-based annotations for simultaneous profiling of bacteria and fungi: vaginal microbiota and mycobiota in healthy women

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.28103030
title: Additional file 2 of Metagenome-validated combined amplicon sequencing and text mining-based annotations for simultaneous profiling of bacteria and fungi: vaginal microbiota and mycobiota in healthy women

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28103030.v1
title: Additional file 2 of Metagenome-validated combined amplicon sequencing and text mining-based annotations for simultaneous profiling of bacteria and fungi: vaginal microbiota and mycobiota in healthy women

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28103033.v1
title: Additional file 3 of Metagenome-validated combined amplicon sequencing and text mining-based annotations for simultaneous profiling of bacteria and fungi: vaginal microbiota and mycobiota in healthy women

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.28103033
title: Additional file 3 of Metagenome-validated combined amplicon sequencing and text mining-based annotations for simultaneous profiling of bacteria and fungi: vaginal microbiota and mycobiota in healthy women

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.28103063
title: Additional file 1 of RNA profiles differ between small and large extracellular vesicle subsets isolated from porcine seminal plasma

description: Additional file 1 (.xlsx). Raw data from the characterization of small (S-, n = 12) and large (L-, n = 12) extracellular vesicle (EV) samples isolated from porcine seminal plasma. (A) Size distribution (nm) and particle concentration (particles/mL) quantified by nanoparticle tracking analysis (NTA). (B) Presence of EV-specific protein and non-vesicular extracellular particle markers analyzed by flow cytometry (CytoFLEX S): (1) carboxyfluorescein succinimidyl ester (CSFE)-positive particles (EV, %), (2) CSFE-positive particles expressing CD63 (%), (3) CSFE-positive particles expressing HSP90β (%), and (4) albumin-positive particles (%)
DOI: 10.6084/m9.figshare.28103063.v1
title: Additional file 1 of RNA profiles differ between small and large extracellular vesicle subsets isolated from porcine seminal plasma

description: Additional file 1 (.xlsx). Raw data from the characterization of small (S-, n = 12) and large (L-, n = 12) extracellular vesicle (EV) samples isolated from porcine seminal plasma. (A) Size distribution (nm) and particle concentration (particles/mL) quantified by nanoparticle tracking analysis (NTA). (B) Presence of EV-specific protein and non-vesicular extracellular particle markers analyzed by flow cytometry (CytoFLEX S): (1) carboxyfluorescein succinimidyl ester (CSFE)-positive particles (EV, %), (2) CSFE-positive particles expressing CD63 (%), (3) CSFE-positive particles expressing HSP90β (%), and (4) albumin-positive particles (%)
DOI: 10.6084/m9.figshare.28103072
title: Additional file 4 of RNA profiles differ between small and large extracellular vesicle subsets isolated from porcine seminal plasma

description: Additional file 4 (.xlsx). Table S1. Raw data for the RNAs identified in each of 12 samples of small (S) and 12 samples of large (L) extracellular vesicles isolated from porcine seminal plasma. Table S2. The mean percentage of read counts of each of the RNA class identified in each of 12 samples of small (S) and 12 samples of large (L) extracellular vesicles isolated from porcine seminal plasma. Table S3. Data of selected all RNAs, including protein-coding RNAs (mRNAs), transfer RNAs (tRNAs), ribosomal RNAs (rRNAs), small nucleolar RNAs (snoRNAs), spliceosomal U small nuclear RNAs (snRNAs), and other non-coding RNAs (ncRNAs) in each of 12 samples of small (S) and 12 samples of large (L) extracellular vesicles isolated from porcine seminal plasma. Table S4. Data of microRNAs identified in small (S, n = 12) and large (L, n = 12) extracellular vesicles samples isolated from porcine seminal plasma. Those with at least 10 counts in three samples were selected for further analysis. Table S5. Data of PIWI-interacting RNAs identified in small (S, n = 12) and large (L, n = 12) extracellular vesicles samples isolated from porcine seminal plasma. Table S6. Data of all RNAs differentially abundant between small (S, n = 12) and large (L, n = 12) extracellular vesicle samples isolated from porcine seminal plasma. All RNAs includes protein-coding RNAs (mRNAs), transfer RNAs (tRNAs), ribosomal RNAs (rRNAs), small nucleolar RNAs (snoRNAs), spliceosomal U small nuclear RNAs (snRNAs), and other non-coding RNAs (ncRNAs). Table S7. Differentially abundant microRNAs (miRNAs) between samples of small (S, n = 12) and large (L, n = 12) extracellular vesicles isolated from porcine seminal plasma. Table S8. List and sequencing data of putative non-microRNAs after analyzing the nucleotide sequence using the Basic Local Alignment Search Tool (BLAST) software. Table S9. Data of the Network of differentially abundant microRNAs (miRNAs) and overrepresented functional categories. Analysis was performed with ToppCluster software ( https://toppcluster.cchmc.org/ )
DOI: 10.6084/m9.figshare.28103072.v1
title: Additional file 4 of RNA profiles differ between small and large extracellular vesicle subsets isolated from porcine seminal plasma

description: Additional file 4 (.xlsx). Table S1. Raw data for the RNAs identified in each of 12 samples of small (S) and 12 samples of large (L) extracellular vesicles isolated from porcine seminal plasma. Table S2. The mean percentage of read counts of each of the RNA class identified in each of 12 samples of small (S) and 12 samples of large (L) extracellular vesicles isolated from porcine seminal plasma. Table S3. Data of selected all RNAs, including protein-coding RNAs (mRNAs), transfer RNAs (tRNAs), ribosomal RNAs (rRNAs), small nucleolar RNAs (snoRNAs), spliceosomal U small nuclear RNAs (snRNAs), and other non-coding RNAs (ncRNAs) in each of 12 samples of small (S) and 12 samples of large (L) extracellular vesicles isolated from porcine seminal plasma. Table S4. Data of microRNAs identified in small (S, n = 12) and large (L, n = 12) extracellular vesicles samples isolated from porcine seminal plasma. Those with at least 10 counts in three samples were selected for further analysis. Table S5. Data of PIWI-interacting RNAs identified in small (S, n = 12) and large (L, n = 12) extracellular vesicles samples isolated from porcine seminal plasma. Table S6. Data of all RNAs differentially abundant between small (S, n = 12) and large (L, n = 12) extracellular vesicle samples isolated from porcine seminal plasma. All RNAs includes protein-coding RNAs (mRNAs), transfer RNAs (tRNAs), ribosomal RNAs (rRNAs), small nucleolar RNAs (snoRNAs), spliceosomal U small nuclear RNAs (snRNAs), and other non-coding RNAs (ncRNAs). Table S7. Differentially abundant microRNAs (miRNAs) between samples of small (S, n = 12) and large (L, n = 12) extracellular vesicles isolated from porcine seminal plasma. Table S8. List and sequencing data of putative non-microRNAs after analyzing the nucleotide sequence using the Basic Local Alignment Search Tool (BLAST) software. Table S9. Data of the Network of differentially abundant microRNAs (miRNAs) and overrepresented functional categories. Analysis was performed with ToppCluster software ( https://toppcluster.cchmc.org/ )
DOI: 10.6084/m9.figshare.28103078
title: Additional file 6 of RNA profiles differ between small and large extracellular vesicle subsets isolated from porcine seminal plasma

description: Additional file 6 (.xlsx). Comparison of microRNAs (miRNAs) identified in porcine seminal extracellular vesicles in other research studies, showing those shared with the present study
DOI: 10.6084/m9.figshare.28103078.v1
title: Additional file 6 of RNA profiles differ between small and large extracellular vesicle subsets isolated from porcine seminal plasma

description: Additional file 6 (.xlsx). Comparison of microRNAs (miRNAs) identified in porcine seminal extracellular vesicles in other research studies, showing those shared with the present study
DOI: 10.6084/m9.figshare.28103079.v1
title: Additional file 6 of Knockdown of IGF2BP2 overcomes cisplatin-resistance in lung cancer through downregulating Spon2 gene

description: Supplementary Material 6: Table S3: 1416 differentially methylated genes (DMGs) between Lv-si-NC and Lv-si-IGF2BP2 groups.
DOI: 10.6084/m9.figshare.28103076
title: Additional file 5 of Knockdown of IGF2BP2 overcomes cisplatin-resistance in lung cancer through downregulating Spon2 gene

description: Supplementary Material 5: Table S2: 540 differentially expressed genes (DEGs) between Lv-si-NC and Lv-si-IGF2BP2 groups.
DOI: 10.6084/m9.figshare.28103076.v1
title: Additional file 5 of Knockdown of IGF2BP2 overcomes cisplatin-resistance in lung cancer through downregulating Spon2 gene

description: Supplementary Material 5: Table S2: 540 differentially expressed genes (DEGs) between Lv-si-NC and Lv-si-IGF2BP2 groups.
DOI: 10.6084/m9.figshare.28103079
title: Additional file 6 of Knockdown of IGF2BP2 overcomes cisplatin-resistance in lung cancer through downregulating Spon2 gene

description: Supplementary Material 6: Table S3: 1416 differentially methylated genes (DMGs) between Lv-si-NC and Lv-si-IGF2BP2 groups.
DOI: 10.6084/m9.figshare.28103082
title: Additional file 7 of Knockdown of IGF2BP2 overcomes cisplatin-resistance in lung cancer through downregulating Spon2 gene

description: Supplementary Material 7: Table S4: 63 overlapping genes betweeen DEGs and DMGs.
DOI: 10.6084/m9.figshare.28103082.v1
title: Additional file 7 of Knockdown of IGF2BP2 overcomes cisplatin-resistance in lung cancer through downregulating Spon2 gene

description: Supplementary Material 7: Table S4: 63 overlapping genes betweeen DEGs and DMGs.
DOI: 10.6084/m9.figshare.28103085.v1
title: Additional file 8 of Knockdown of IGF2BP2 overcomes cisplatin-resistance in lung cancer through downregulating Spon2 gene

description: Supplementary Material 8: Table S5 GSEA analysis.
DOI: 10.6084/m9.figshare.28103085
title: Additional file 8 of Knockdown of IGF2BP2 overcomes cisplatin-resistance in lung cancer through downregulating Spon2 gene

description: Supplementary Material 8: Table S5 GSEA analysis.
DOI: 10.6084/m9.figshare.28103133
title: Additional file 8 of Conservation of the dehiscence zone gene regulatory network in dicots and the role of the SEEDSTICK ortholog of California poppy (Eschscholzia californica) in fruit development

description: Supplementary material 8.
DOI: 10.6084/m9.figshare.28103136.v1
title: Additional file 9 of Conservation of the dehiscence zone gene regulatory network in dicots and the role of the SEEDSTICK ortholog of California poppy (Eschscholzia californica) in fruit development

description: Supplementary material 9.
DOI: 10.6084/m9.figshare.28103151
title: Additional file 2 of Factors associated with patients’ demand for low-value care: a scoping review

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28103151.v1
title: Additional file 2 of Factors associated with patients’ demand for low-value care: a scoping review

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28103156
title: Additional file 1 of Onset and predictors of first-line antiretroviral therapy treatment failure among children in Ethiopia: a systematic review and meta-analysis

description: Additional file 1: PRISMA _2020_checklist_cohort.
DOI: 10.6084/m9.figshare.28103156.v1
title: Additional file 1 of Onset and predictors of first-line antiretroviral therapy treatment failure among children in Ethiopia: a systematic review and meta-analysis

description: Additional file 1: PRISMA _2020_checklist_cohort.
DOI: 10.6084/m9.figshare.27246053
title: Additional file 1 of Lower activity of cholesteryl ester transfer protein (CETP) and the risk of dementia: a Mendelian randomization analysis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.27246053.v1
title: Additional file 1 of Lower activity of cholesteryl ester transfer protein (CETP) and the risk of dementia: a Mendelian randomization analysis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.27246056
title: Additional file 2 of Lower activity of cholesteryl ester transfer protein (CETP) and the risk of dementia: a Mendelian randomization analysis

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.27246056.v1
title: Additional file 2 of Lower activity of cholesteryl ester transfer protein (CETP) and the risk of dementia: a Mendelian randomization analysis

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.28103198
title: Additional file 3 of Canid alphaherpesvirus 1 infection alters the gene expression and secretome profile of canine adipose-derived mesenchymal stem cells in vitro

description: Additional file 3 The table lists all mutations found in the wild-type CHV (GenBank accession number PP349830) relative to the closest relative, MW353130. Mutation positions, effects, gene genes affected, and protein-level consequences are also listed. (XLSX 13 KB)
DOI: 10.6084/m9.figshare.28103198.v1
title: Additional file 3 of Canid alphaherpesvirus 1 infection alters the gene expression and secretome profile of canine adipose-derived mesenchymal stem cells in vitro

description: Additional file 3 The table lists all mutations found in the wild-type CHV (GenBank accession number PP349830) relative to the closest relative, MW353130. Mutation positions, effects, gene genes affected, and protein-level consequences are also listed. (XLSX 13 KB)
DOI: 10.6084/m9.figshare.28103201
title: Additional file 5 of Canid alphaherpesvirus 1 infection alters the gene expression and secretome profile of canine adipose-derived mesenchymal stem cells in vitro

description: Additional file 5 This additional table displays the RNA quality control (QC) analysis results, including the RNA integrity score and 28:18S ratio for all assessed total RNA samples. (XLSX 10 KB)
DOI: 10.6084/m9.figshare.28103201.v1
title: Additional file 5 of Canid alphaherpesvirus 1 infection alters the gene expression and secretome profile of canine adipose-derived mesenchymal stem cells in vitro

description: Additional file 5 This additional table displays the RNA quality control (QC) analysis results, including the RNA integrity score and 28:18S ratio for all assessed total RNA samples. (XLSX 10 KB)
DOI: 10.6084/m9.figshare.28103204
title: Additional file 6 of Canid alphaherpesvirus 1 infection alters the gene expression and secretome profile of canine adipose-derived mesenchymal stem cells in vitro

description: Additional file 6 This table provides each identified protein’s accession number, gene name, and molecular weight. Furthermore, t-tests were used to determine the significance and fold changes in secretome protein secretion between CHV-infected and uninfected samples. The list is organised in ascending order based on the t-test p values. The blue color represents significantly downregulated proteins (p &lt; 0.05) with a fold change exceeding 1.3. Conversely, the orange color signifies proteins demonstrating statistical significance (p &lt; 0.05) in upregulation, with a fold change greater than 1.3. A “missing value” indicates that the protein is secreted exclusively in uninfected samples, while a “reference missing” indicates that the protein is secreted solely in CHV-infected samples. (XLSX 108 KB)
DOI: 10.6084/m9.figshare.28103204.v1
title: Additional file 6 of Canid alphaherpesvirus 1 infection alters the gene expression and secretome profile of canine adipose-derived mesenchymal stem cells in vitro

description: Additional file 6 This table provides each identified protein’s accession number, gene name, and molecular weight. Furthermore, t-tests were used to determine the significance and fold changes in secretome protein secretion between CHV-infected and uninfected samples. The list is organised in ascending order based on the t-test p values. The blue color represents significantly downregulated proteins (p &lt; 0.05) with a fold change exceeding 1.3. Conversely, the orange color signifies proteins demonstrating statistical significance (p &lt; 0.05) in upregulation, with a fold change greater than 1.3. A “missing value” indicates that the protein is secreted exclusively in uninfected samples, while a “reference missing” indicates that the protein is secreted solely in CHV-infected samples. (XLSX 108 KB)
DOI: 10.6084/m9.figshare.28103208
title: Additional file 1 of Density-dependent distributions of hosts and parasitoids resulting from density-independent dispersal rules: implications for host–parasitoid interactions and population dynamics

description: Additional file 1.
DOI: 10.6084/m9.figshare.28103208.v1
title: Additional file 1 of Density-dependent distributions of hosts and parasitoids resulting from density-independent dispersal rules: implications for host–parasitoid interactions and population dynamics

description: Additional file 1.
DOI: 10.6084/m9.figshare.28103213
title: Additional file 1 of LCRAnnotationsDB: a database of low complexity regions functional and structural annotations

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.28103213.v1
title: Additional file 1 of LCRAnnotationsDB: a database of low complexity regions functional and structural annotations

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.28103222
title: Additional file 3 of LCRAnnotationsDB: a database of low complexity regions functional and structural annotations

description: Supplementary Material 3.