cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1053065.v1
title: Timmed and clean reads (d)

description: Timmed and clean reads
DOI: 10.6084/m9.figshare.1053066.v1
title: Timmed and clean reads (e)

description: Timmed and clean reads
DOI: 10.6084/m9.figshare.1053059
title: Full genomes of 15 Vibrio anguillarum strains

description: Enclosed are the assembly (scaffold level) and annotations (amino acid level) of 15 Vibrio anguillarum strains as described in "Comparative genome sequencing to asses the genetic diversity and virulence attributes of 15 <em>Vibrio anguillarum</em> strains" (Busschaert <em>et al</em>, 2014)
DOI: 10.6084/m9.figshare.1053026
title: Wiggle plot showing Oxford Nanopore signal data for a P. aeruginosa read

description: A wiggle-plot for the Oxford Nanopore read posted today demonstrating change in current (measured in picoamps) over time [1]. The total translocation time for this fragment was ~273 seconds.
DOI: 10.6084/m9.figshare.1053059.v1
title: Full genomes of 15 Vibrio anguillarum strains

description: Enclosed are the assembly (scaffold level) and annotations (amino acid level) of 15 Vibrio anguillarum strains as described in "Comparative genome sequencing to asses the genetic diversity and virulence attributes of 15 <em>Vibrio anguillarum</em> strains" (Busschaert <em>et al</em>, 2014)
DOI: 10.6084/m9.figshare.1053020
title: A brief overview of the size and composition of the myrtle rust genome and its taxonomic status

description: Using <i>de novo</i> assembly of 46 million paired end sequence reads of length 250 bp for a myrtle rust isolate, we have estimated its genome size to be between 103 and 145 Mb and the number of proteins as &gt;19,000. Annotation of the contigs found a very large percentage of proteins are associated with molecular functions of DNA binding or binding in biological processes for DNA integration and RNA-dependent DNA replication. A large proportion of these activities are attributed to the transposable elements (TEs). These elements are estimated to comprise 27% of the genome with 22% retrotransposons and 5% DNA transposons. The exon and intron boundaries of 46 genes occurring on contigs &gt;20,000 bp have been determined. The number of introns range from 2 to 20 with a mean of 7. Phylogenetic analyses using partial <i>COXI, 18S rRNA</i> and <i>28S rRNA</i> genes have placed myrtle rust in the Pucciniaceae lineage on a separate taxonomic branch from the families of Pucciniaceae, Phragmidiaceae, Sphaerophragmiaceae, Phragmidiaceae, Uropyxidaceae, Chaconiaceae and Phakopsoraceae. Further work is thus required to determine the family placement of myrtle rust in the Pucciniaceae of Pucciniales.
DOI: 10.6084/m9.figshare.1052997
title: Aggregation vs. nonaggregation strategies in Dictyostelium discoideum amoebae in response to starvation stress: raw data

description: Spreadsheet containing the data shown in Figure 2A.<br>Spreadsheet containing the data shown in Figure 2B.<br>Spreadsheet containing the data shown in Figure 2C.<br>Spreadsheet containing the data shown in Figure 3A.<br>Spreadsheet containing the data shown in Figure 3B.<br>Spreadsheet containing the data shown in Figure 3C.<br>Spreadsheet containing the data shown in Figure 3E.<br>Spreadsheet containing the data shown in Figure 3F.<br>Spreadsheet containing the data shown in Figure 4D.<br>Spreadsheet containing the data shown in Sup. Figure S1.<br>Spreadsheet containing the data shown in Sup. Figure S4.<br>Spreadsheet containing the data shown in Sup. Figure S5.<br>Macros is an archive containing the set of ImageJ macros used for image analysis that was used to produce the data shown in Figures 2, 3, 4, S1, S4 and S5.<br>Code is the simulation code used in Figure 6. Sup. Movie S1. Partitioning of Dictyostelium populations under starvation stress into aggregating vs non-aggregating cells. 0.25% or RFP-expressing AX3 cells mixed with 99.75% of GFP-expressing cells were plated according to the standard “sudden” starvation experimental protocol. After aggregates form, most single RFP-expressing cells are found in aggregates, and a minority of them are found outside of aggregates even though aggregating and non-aggregating cells were intermixed at the onset of starvation. Both phase contrast<br>(left) and red fluorescent (right) images show that non-aggregating cells are alive and motile. Counting single RFP-cells before aggregation and cells that are outside of aggregates after aggregation provides a direct estimate of aggregating and non-aggregating cell numbers. Sup. Movie S2. Non-aggregating cells have not stably lost the ability to aggregate. After the aggregation had finished and fruiting bodies started to form, fresh nutrients (dead bacteria) were added to the area with non-aggregating cells. Once bacteria have been consumed these cells aggregate and develop into a fruiting body. Sup. Movie S3. Non-aggregating cells are capable of resuming growth immediately upon food arrival while aggregating cells are embedded in development. 18h after plating cells on nutrient-free agar, aggregating cells have formed slugs while non-aggregating cells are starving. Nutrition in form of dead bacteria was added at this point. Multicellular<br>development goes on until the formation of fruiting bodies because cells in aggregates are irreversibly committed to development even in the presence of food. In contrast, nonaggregating cells feed on bacteria and divide several times. At the end of fruiting body formation, non-aggregating cells have already consumed most of the bacteria.
DOI: 10.6084/m9.figshare.1053020.v1
title: A brief overview of the size and composition of the myrtle rust genome and its taxonomic status

description: Using <i>de novo</i> assembly of 46 million paired end sequence reads of length 250 bp for a myrtle rust isolate, we have estimated its genome size to be between 103 and 145 Mb and the number of proteins as &gt;19,000. Annotation of the contigs found a very large percentage of proteins are associated with molecular functions of DNA binding or binding in biological processes for DNA integration and RNA-dependent DNA replication. A large proportion of these activities are attributed to the transposable elements (TEs). These elements are estimated to comprise 27% of the genome with 22% retrotransposons and 5% DNA transposons. The exon and intron boundaries of 46 genes occurring on contigs &gt;20,000 bp have been determined. The number of introns range from 2 to 20 with a mean of 7. Phylogenetic analyses using partial <i>COXI, 18S rRNA</i> and <i>28S rRNA</i> genes have placed myrtle rust in the Pucciniaceae lineage on a separate taxonomic branch from the families of Pucciniaceae, Phragmidiaceae, Sphaerophragmiaceae, Phragmidiaceae, Uropyxidaceae, Chaconiaceae and Phakopsoraceae. Further work is thus required to determine the family placement of myrtle rust in the Pucciniaceae of Pucciniales.
DOI: 10.6084/m9.figshare.1053026.v2
title: Wiggle plot showing Oxford Nanopore signal data for a P. aeruginosa read

description: A wiggle-plot for the Oxford Nanopore read posted today demonstrating change in current (measured in picoamps) over time [1]. The total translocation time for this fragment was ~273 seconds.
DOI: 10.6084/m9.figshare.1052997.v1
title: Aggregation vs. nonaggregation strategies in Dictyostelium discoideum amoebae in response to starvation stress: raw data

description: Spreadsheet containing the data shown in Figure 2A.<br>Spreadsheet containing the data shown in Figure 2B.<br>Spreadsheet containing the data shown in Figure 2C.<br>Spreadsheet containing the data shown in Figure 3A.<br>Spreadsheet containing the data shown in Figure 3B.<br>Spreadsheet containing the data shown in Figure 3C.<br>Spreadsheet containing the data shown in Figure 3E.<br>Spreadsheet containing the data shown in Figure 3F.<br>Spreadsheet containing the data shown in Figure 4D.<br>Spreadsheet containing the data shown in Sup. Figure S1.<br>Spreadsheet containing the data shown in Sup. Figure S4.<br>Spreadsheet containing the data shown in Sup. Figure S5.<br>Macros is an archive containing the set of ImageJ macros used for image analysis that was used to produce the data shown in Figures 2, 3, 4, S1, S4 and S5.<br>Code is the simulation code used in Figure 6. Sup. Movie S1. Partitioning of Dictyostelium populations under starvation stress into aggregating vs non-aggregating cells. 0.25% or RFP-expressing AX3 cells mixed with 99.75% of GFP-expressing cells were plated according to the standard “sudden” starvation experimental protocol. After aggregates form, most single RFP-expressing cells are found in aggregates, and a minority of them are found outside of aggregates even though aggregating and non-aggregating cells were intermixed at the onset of starvation. Both phase contrast<br>(left) and red fluorescent (right) images show that non-aggregating cells are alive and motile. Counting single RFP-cells before aggregation and cells that are outside of aggregates after aggregation provides a direct estimate of aggregating and non-aggregating cell numbers. Sup. Movie S2. Non-aggregating cells have not stably lost the ability to aggregate. After the aggregation had finished and fruiting bodies started to form, fresh nutrients (dead bacteria) were added to the area with non-aggregating cells. Once bacteria have been consumed these cells aggregate and develop into a fruiting body. Sup. Movie S3. Non-aggregating cells are capable of resuming growth immediately upon food arrival while aggregating cells are embedded in development. 18h after plating cells on nutrient-free agar, aggregating cells have formed slugs while non-aggregating cells are starving. Nutrition in form of dead bacteria was added at this point. Multicellular<br>development goes on until the formation of fruiting bodies because cells in aggregates are irreversibly committed to development even in the presence of food. In contrast, nonaggregating cells feed on bacteria and divide several times. At the end of fruiting body formation, non-aggregating cells have already consumed most of the bacteria.
DOI: 10.6084/m9.figshare.1053026.v1
title: Wiggle plot showing Oxford Nanopore signal data for a P. aeruginosa read

description: A wiggle-plot for the Oxford Nanopore read posted today demonstrating change in current (measured in picoamps) over time [1]. The total translocation time for this fragment was ~64 seconds.
DOI: 10.6084/m9.figshare.1051864
title: Exoplanet population inference

description: The data and results for our hierarchical probabilistic study of the population of exoplanets based on noisy measurements and incomplete catalogs.
DOI: 10.6084/m9.figshare.1051864.v1
title: Exoplanet population inference

description: The data and results for our hierarchical probabilistic study of the population of exoplanets based on noisy measurements and incomplete catalogs.
DOI: 10.6084/m9.figshare.1051834
title: Scipy-0.14.0 builds for Windows 32bit/64bit

description: Scipy-0.14.0 builds for Windows 32bit/64bit. Mingw_w64 build. Linked to OpenBLAS.
DOI: 10.6084/m9.figshare.1051833
title: Numpy-0.19.0b1 builds for Windows 32bit/64bit

description: Wheels for numpy-1.9.0b1 build for Windows 32bit and 64bit. Mingw-w64 build. Linked to OpenBLAS.
DOI: 10.6084/m9.figshare.1051815
title: Temperature and precipitation in Arctic Alaska: A graphical library for 43 communities, 1979–2013

description: Historical precipitation and temperature data in graphical format for 43 Alaska communities
DOI: 10.6084/m9.figshare.1051815.v1
title: Temperature and precipitation in Arctic Alaska: A graphical library for 43 communities, 1979–2013

description: Historical precipitation and temperature data in graphical format for 43 Alaska communities
DOI: 10.6084/m9.figshare.1051833.v1
title: Windows 64bit numpy,scipy wheels OpenBLAS

description: wheels for numpy-1.9.0b1 and scipy-0.14.0 build for Windows 64bit and 32bit. Mingw-w64 build. Linked to OpenBLAS.
DOI: 10.6084/m9.figshare.1051833.v3
title: Numpy-0.19.0b1 builds for Windows 32bit/64bit

description: Wheels for numpy-1.9.0b1 build for Windows 32bit and 64bit. Mingw-w64 build. Linked to OpenBLAS.
DOI: 10.6084/m9.figshare.1051833.v2
title: Windows 32/64bit numpy,scipy wheels OpenBLAS

description: wheels for numpy-1.9.0b1 build for Windows 32bit and 64bit. Mingw-w64 build. Linked to OpenBLAS.
DOI: 10.6084/m9.figshare.1051770
title: Exoplanet population inference

description: The data and results for our hierarchical probabilistic study of the population of exoplanets based on noisy measurements and incomplete catalogs.
DOI: 10.6084/m9.figshare.1051770.v1
title: Exoplanet population inference and the abundance of Earth analogs from noisy, incomplete catalogs

description: The data and results for our hierarchical probabilistic study of the population of exoplanets based on noisy measurements and incomplete catalogs.
DOI: 10.6084/m9.figshare.1051770.v3
title: Exoplanet population inference

description: The data and results for our hierarchical probabilistic study of the population of exoplanets based on noisy measurements and incomplete catalogs.
DOI: 10.6084/m9.figshare.1051756
title: Discrimination contours for moving sounds (freeman et al)

description: raw data for Discrimination contours for moving sounds reveal duration and distance cues dominate auditory speed perception published in PLoS One
DOI: 10.6084/m9.figshare.1051770.v2
title: Exoplanet population inference

description: The data and results for our hierarchical probabilistic study of the population of exoplanets based on noisy measurements and incomplete catalogs.
DOI: 10.6084/m9.figshare.1051756.v1
title: Discrimination contours for moving sounds (freeman et al)

description: raw data for Discrimination contours for moving sounds reveal duration and distance cues dominate auditory speed perception published in PLoS One
DOI: 10.6084/m9.figshare.1051748
title: SPSS Data Set S1 Logistic Regression Model Data

description: Data set from PLOS ONE Article Published Entitled: Western Lowland Gorillas Signal Selectively Using Odor
DOI: 10.6084/m9.figshare.1051751.v1
title: Tardigrades March 2014

description: Images of tardigrades acquired with cell phone cameras.
DOI: 10.6084/m9.figshare.1051746
title: SPSS Data Set S2 Extreme Smell in Relation to Monthly Interaction Totals Data

description: Data Sets Associated to the PLOS ONE article entitled: Western Lowland Gorillas Signal Selectively Using Odor
DOI: 10.6084/m9.figshare.1051747
title: SPSS Data Set S3 Loud and Quiet Interaction Data

description: Data Set from PLOS One Article entitled: Western Lowland Gorillas Signal Selectively Using Odor
DOI: 10.6084/m9.figshare.1051748.v1
title: SPSS Data Set 1 Logistic Regression Model Data

description: Data set from PLOS ONE Article Published Entitled: Western Lowland Gorillas Signal Selectively Using Odor
DOI: 10.6084/m9.figshare.1051747.v1
title: SPSS Data Set 3 Loud and Quiet Interaction Data

description: Data Set from PLOS One Article entitled: Western Lowland Gorillas Signal Selectively Using Odor
DOI: 10.6084/m9.figshare.1051645
title: Apoptotic MNC-secretomes in experimental stroke

description: Mixed Model Analysis (SAS output) The data were analyzed using linear mixed models for the neuroscore on treatment group and time-point with the factor animal included as a random effect. The MIXED procedure in SAS 9.3 was used to perform the calculations. The raw output contains information on the model specifications, the estimated error variance and random effects variance, the estimated regression coefficients, the covariance structure of the model coefficients and type III F-tests for the hypotheses of no effect of either fixed effect or their interactions. An interaction plot was drawn using the GLM procedure. This plot shows the individual observations and their sample mean values in each group and for each time-point. The group labels 0,1,2 and 3 in the raw output refer to the treatment group in setting 1, the control group in setting 1, the treatment group in setting 2 and the control group in setting 2, respectively. Original Western blots to Figure 5 Expression of proteins involved in cytoprotective pathways in human Astrocytes and Schwann Cells Astrocytes (page 1) or Schwann Cells (page 2) were stimulated with hMNCapo sec, control medium (served as control to treatment) or positive control (control to the measured protein). Original blots for all measured proteins are given in this raw data set (pages 1 and 2). For each blot, lanes (1), (2), and (3) correspond to the groups medium control [(1)=control to treatment], human apoptotic MNC-secretomes [(2)=treatment] and positive control [(3)=recombinant protein].<br>Bands in each blot are shown for phosphorylated CREB, total-CREB, phosphorylated Erk1/2, total-Erk 1/2, phosphorylated HSP27, total-HSP27, phosphorylated cJun, total-cJun, phosphorylated Akt, and total-Akt. The molecular weight (kDa) for each protein can be seen under each blot.<br>Ponceau staining was used as loading control for each group (1), (2), and (3) and suggest equal loading. Original Western blots to Figure 6 Expression of Phosphorylated CREB in Astrocytes and Neurons after stimulation with the active compound hMNCapo sec or control medium: Cultured human Astrocytes and Neurons were incubated with hMNCapo sec or control (cell culture-) medium at indicated concentrations. Original blots can be seen here.<br>Ponceau staining shows equal loading.
DOI: 10.6084/m9.figshare.1051746.v1
title: Dr.

description: Data Sets Associated to the PLOS ONE article entitled: Western Lowland Gorillas Signal Selectively Using Odor
DOI: 10.6084/m9.figshare.1051657
title: In-depth interview data on the values and practices of science communicators

description: The data file associated with the manuscript (in xlsx format) provides a tabulation of the number of coded mentions of all major and minor theme codes. Codes were derived from interview textual analysis in Atlas.ti. For example, the data file provides a raw format of the mention frequency of value codes presented in Figure 1. Other codes and themes not described in depth within this manuscript are tabulated in the data file, including storytelling tactics and topics perceived to be of wide audience interest. An independent list of interview quotes associated with the mention of any code included in the data file can be requested by contacting the primary corresponding author (PB) at pbrow11@tigers.lsu.edu.
DOI: 10.6084/m9.figshare.1051645.v1
title: Apoptotic MNC-secretomes in experimental stroke

description: Mixed Model Analysis (SAS output) The data were analyzed using linear mixed models for the neuroscore on treatment group and time-point with the factor animal included as a random effect. The MIXED procedure in SAS 9.3 was used to perform the calculations. The raw output contains information on the model specifications, the estimated error variance and random effects variance, the estimated regression coefficients, the covariance structure of the model coefficients and type III F-tests for the hypotheses of no effect of either fixed effect or their interactions. An interaction plot was drawn using the GLM procedure. This plot shows the individual observations and their sample mean values in each group and for each time-point. The group labels 0,1,2 and 3 in the raw output refer to the treatment group in setting 1, the control group in setting 1, the treatment group in setting 2 and the control group in setting 2, respectively. Original Western blots to Figure 5 Expression of proteins involved in cytoprotective pathways in human Astrocytes and Schwann Cells Astrocytes (page 1) or Schwann Cells (page 2) were stimulated with hMNCapo sec, control medium (served as control to treatment) or positive control (control to the measured protein). Original blots for all measured proteins are given in this raw data set (pages 1 and 2). For each blot, lanes (1), (2), and (3) correspond to the groups medium control [(1)=control to treatment], human apoptotic MNC-secretomes [(2)=treatment] and positive control [(3)=recombinant protein].<br>Bands in each blot are shown for phosphorylated CREB, total-CREB, phosphorylated Erk1/2, total-Erk 1/2, phosphorylated HSP27, total-HSP27, phosphorylated cJun, total-cJun, phosphorylated Akt, and total-Akt. The molecular weight (kDa) for each protein can be seen under each blot.<br>Ponceau staining was used as loading control for each group (1), (2), and (3) and suggest equal loading. Original Western blots to Figure 6 Expression of Phosphorylated CREB in Astrocytes and Neurons after stimulation with the active compound hMNCapo sec or control medium: Cultured human Astrocytes and Neurons were incubated with hMNCapo sec or control (cell culture-) medium at indicated concentrations. Original blots can be seen here.<br>Ponceau staining shows equal loading.
DOI: 10.6084/m9.figshare.1051657.v1
title: In-depth interview data on the values and practices of science communicators

description: The data file associated with the manuscript (in xlsx format) provides a tabulation of the number of coded mentions of all major and minor theme codes. Codes were derived from interview textual analysis in Atlas.ti. For example, the data file provides a raw format of the mention frequency of value codes presented in Figure 1. Other codes and themes not described in depth within this manuscript are tabulated in the data file, including storytelling tactics and topics perceived to be of wide audience interest. An independent list of interview quotes associated with the mention of any code included in the data file can be requested by contacting the primary corresponding author (PB) at pbrow11@tigers.lsu.edu.
DOI: 10.6084/m9.figshare.1051746.v3
title: SPSS Data Set S2 Extreme Smell in Relation to Monthly Interaction Totals Data

description: Data Sets Associated to the PLOS ONE article entitled: Western Lowland Gorillas Signal Selectively Using Odor
DOI: 10.6084/m9.figshare.1051746.v2
title: SPSS Data Set 2 Extreme Smell in Relation to Monthly Interaction Totals Data

description: Data Sets Associated to the PLOS ONE article entitled: Western Lowland Gorillas Signal Selectively Using Odor
DOI: 10.6084/m9.figshare.1051189
title: COMPREHENSIVE CAPACITY BUILDING AND INNOVATION FOR CHANGE AND DEVELOPMENT IN ICT IMPLEMENTATION IN EDUCATION: RESTRUCTURE AND RE-CULTURE

description: The purpose of this study is to provide better understanding of what is the meaning being<br>comprehensive capacity building in affording change and bring innovation for ICT implementation.<br>Although this is just a concept paper, however, this entails a little different nuance that need to be<br>considered in restructuring and re-culturing the capacity of individual, organization and society.<br>Therefore, some aspects of capacity building, innovation, restructure and re-culture teacher role as leader<br>and its power of leadership will be described
DOI: 10.6084/m9.figshare.1050939
title: STUDY OF INTERMOLECULAR FORCES AND INTERACTIONS IN BINARY LIQUID MIXTURE CHLOROFORM, ACETONE, MXYLENE, AND CYCLOHEXANE IN DMSO

description: Thermodynamic studies like density ( ρ ), ultrasonic speed ( u ) and excess molar volume ( Vm E ) of binary liquid mixture of Chloroform ,Acetone, m- Xylene ,Cyclohexane+ DMSO have been carried out over the different range of composition at 308.15 K. Thermodynamic parameters like isentropic compressibility Ks , interaction parameter, χ12 , Flory parameters, coefficients, Ai and standard deviations, σ (Y E ) have been computed from experimental findings. The excess thermodynamic functions have been fitted to the RedlichKister polynomial equation. The experimental ultrasonic speeds have been analyzed in terms of Jacobson Free<br>Length Theory (FLT), Schaaff’s Collision Factor Theory (CFT), Nomoto’s relation, and Van Dael’s ideal<br>mixture relation. Intermolecular Free Length, Lf<br>, and available volume, Va , have been calculated from FLT,<br>CFT and thermo acoustic approach.