cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14376842.v1
title: Expert panel asessment

description: Expert panel assessments of digital tympanic membrane images
DOI: 10.6084/m9.figshare.14459736.v1
title: Nestling body condition

description: Data for nestling tree swallows, comparing between individuals that were (or were not) exposed to artificial light at night. Data were taken in Ithaca, NY, USA in April - June 2019.
DOI: 10.6084/m9.figshare.14635376.v1
title: Raw data, qPCR assays from Genes implicated in <i>Caenorhabditis elegans</i> and human health regulate stress resistance and physical abilities in aged <i>Caenorhabditis elegans</i>

description: Raw data of all qPCR assays
DOI: 10.6084/m9.figshare.23150642.v3
title: Source Excitation-Emission Matrices (EEMs)

description: This dataset contains data from 202 excitation-emission matrices measured from 8 different types of land-use and one Reference profile using fluorescence spectroscopy. Column names indicate the land-use source category. <br> Each column corresponds to a vector of the normalized fluorescence intensities of a single EEM. EEMs were of dimension 151 x 43 before they were vectorized (the 43 columns, each of length 151, were concatenated to form a single vector).
DOI: 10.17632/3ks3syd2n3
title: Movies and dataset for: Hierarchical 2D to 3D micro/nano-histology of human dental caries lesions using light, X-ray and electron microscopy

description: Movies as described in the paper 'Hierarchical 2D to 3D micro/nano-histology of human dental caries lesions using light, X-ray and electron microscopy' (2022), Supplementary Information, SI-Movie S1-9. The details of scanning electron microscopy and synchrotron tomography results illustrated in the movies. 
Folder 'Dataset_crop.zip' contained a sequence of tif images (16-bits) which were cropped using ImageJ-Fiji, software mentioned in the manuscript (to get the crop dataset for the data in the software makeRectangle(0, 1272, 1563, 1238), dimension 1563 × 1238 pixels, voxel size 0.325 µm) from a full reconstructed synchrotron tomography raw dataset (10x objective lens, field of view 2560 × 2160 pixels, 831.675 × 701.675 µm, voxel size 0.325 µm, crop illustrated on the tif image 'Regionofinterest.tif'). This stack of datasets are extracted from one of the scans used for the tomography montage detailed in the manuscript. It shows the carious region and also some FIB-SEM milled regions.
DOI: 10.17632/7rjn2xj7bc
title: Sensor Signals

description: The data set contains sensor signals from a real application in industrial IoT. Our sample data contains data sensors from “Fakoor Sanat Iron Ore Concentrate Plant” that is IoT enabled. Ball mill is a piece of important and expensive equipment in the Iron Ore Concentrate industry. Sensors collect temperature and send them to the Fakoor cloud. Events gathered from the ball mill are used for failure prevention.
DOI: 10.6084/m9.figshare.25674639.v1
title: EXCEL NMA -.xlsx

description: This research investigated the use of auricular neuromodulation, a specialized acupuncture technique involving electrostimulation of nerves in the ear, as a potential treatment for acute low back pain in emergency department settings. The aim was to determine its feasibility and effects as an adjuvant therapy alongside usual care.The study utilized a pilot pragmatic parallel randomized controlled trial design, meaning participants were randomly assigned to either receive usual care alone or usual care plus auricular neuromodulation. The researchers evaluated various aspects including feasibility, intervention delivery, and outcome assessments.Despite challenges in recruitment due to the COVID-19 pandemic and organizational changes, the study managed to enroll 40 participants (20 per group) at a slower rate than anticipated. Feasibility of the intervention was established, although there were difficulties in outcome assessment, with up to 25% missing data and unblinded assessors.The pilot trial indicated a potential benefit of auricular neuromodulation, with the group receiving this intervention showing greater reduction in acute pain compared to the control group. However, due to the assessment difficulties and the small sample size, further research with a larger sample size and improved outcome evaluation methods is recommended to better evaluate the efficacy of this technique.In summary, while the pilot trial demonstrated the feasibility of conducting a modified future trial, it also highlighted the need for refinement in outcome evaluation methods. This lays the groundwork for future research to delve deeper into the effectiveness of auricular neuromodulation in managing acute low back pain.
DOI: 10.17632/8pvyvvn43h
title: Cloud opacity variations from nighttime observations in Venus transparency windows

description: Dataset for the publication "Cloud opacity variations from nighttime observations in Venus transparency windows" by Evdokimova et al.

It contains a README file and a list of the retrieved values of Venus cloud optical depth. The results are provided for the individual measurements.
DOI: 10.17632/x2k6xhm4wt
title: Constraining sulfur and iron cycling in seep systems: insights from authigenic pyrite signatures

description: Seep activity has emerged as a critical area of research for understanding biotic communities and elemental cycling in deep extreme environments. While previous studies have predominantly focused on sulfur isotopes in pyrite as a proxy for seep activity, recent advancements highlight the potential of iron isotopes as an additional indicator. This study investigates three sediment cores from the Taixinan Basin (core 973-4) and the Pearl River Mouth Basin (cores GG03 and Z22-3) in the Northern South China Sea. Using SEM-EDS analysis and in-situ sulfur (δ34S) and iron (δ56Fe) isotope measurements, the evolution of sulfur and iron in seep environments is explored. The δ34S values of pyrite in core 973-4 range from −18.79‰ to 27.26‰, indicating a closed-system seep activity. In contrast, pyrite in cores GG03 and Z22-3 exhibit significantly negative δ34S values (−49.75‰ to −46.29‰ and −53.88‰ to −37.11‰, respectively), characteristic of open-system seep activities. Additionally, the δ56Fe values of pyrite are consistently negative across all cores (−1.39‰ to −0.31‰ in core 973-4, −1.59‰ to −0.24‰ in core GG03, and −1.10‰ to −0.20‰ in core Z22-3), suggesting the absence of a heavy iron isotope pool. By integrating these findings with previous researches, this study demonstrates that the δ56Fe values of pyrite are influenced by the position of the sulfate-methane transition zone, diverse microbial reduction processes, and varying iron sources. This study provides valuable insights into the sulfur and iron cycles in both modern and ancient seep environments, enhancing the further understanding of biogeochemical processes in extreme settings.
DOI: 10.6084/m9.figshare.13247021.v1
title: nasbench301 data

description: Dataset of neural architectures and their performances on CIFAR-10 used to train the surrogates models for NAS-Bench-301
DOI: 10.6084/m9.figshare.3125005.v2
title: PERU MIGRANT Study | Baseline dataset

description: The <b>PERU MIGRANT Study</b> (PEru's Rural to Urban MIGRANTs Study) was designed to investigate the magnitude of differences between rural-to-urban migrant and non-migrant groups in specific cardiovascular risk factors. Three groups were selected: i) Rural, people who have always have lived in a rural environment; ii) Rural-urban, people who migrated from rural to urban areas; and, iii) Urban, people who have always lived in a urban environment.The <b>PERU MIGRANT Study protocol, instruments and variables</b> are described in full in:Miranda JJ, Gilman RH, García HH, Smeeth L. The effect on cardiovascular risk factors of migration from rural to urban areas in Peru: PERU MIGRANT Study. <i>BMC Cardiovasc Disord</i> 2009;9:23. The <b>main findings of the PERU MIGRANT Study</b> are published in:Miranda JJ, Gilman RH, Smeeth L. Differences in cardiovascular risk factors in rural, urban and rural-to-urban migrants in Peru. <i>Heart</i> 2011;97(10):787-96.
DOI: 10.6084/m9.figshare.9800243.v1
title: Supplementary Material for: Prevalence of Concomitant Coronary Artery Disease and Its Impact on Acute Kidney Injury for Chinese Adult Patients Undergoing Valvular Heart Surgery

description: <b><i>Introduction:</i></b> Significant coronary artery disease (CAD) in patients undergoing valvular heart surgery (VHS) is an indication for combined valvular heart surgery and coronary artery bypass grafting. However, the impact of nonsignificant CAD on postoperative outcomes is not well understood. This study illustrated the epidemiological characteristics of CAD in China and investigated the impact of CAD on postoperative acute kidney injury (AKI), intensive care unit (ICU) stay, and postoperative mortality. <b><i>Methods:</i></b> This study comprised an epidemiological survey followed by a case-control investigation. The epidemiological characteristics of CAD were studied in 4,172 consecutive patients who underwent coronary angiography before planned VHS at a core cardiovascular center. Then, 3,618 patients were selected for the subsequent case-control study to further analyze the associations between CAD and postoperative advanced AKI (grade 2 or 3 by KDIGO criteria), longer ICU stay (highest quartile), and increased mortality by logistic regression. <b><i>Results:</i></b> Of the participants, 5.1 and 9.3% had moderate and significant CAD, respectively. The incidence of CAD increased after 60 years of age. Although CAD was not related to longer postoperative ICU stay in a multivariate logistic model, moderate CAD (OR 1.539 [95% CI 1.078–2.199]) and significant CAD (OR 1.798 [95% CI 1.094–2.955]) remained independent risk factors for postoperative advanced AKI after adjusting for multiple traditional risk factors. Significant CAD, but not nonsignificant CAD, was associated with postoperative mortality. <b><i>Conclusions:</i></b> Concomitant CAD is common in Chinese patients who undergo VHS. Moderate and significant CAD might have detrimental effects on postoperative advanced AKI.
DOI: 10.17632/hr2z5yxtnw
title: Pollen dataset from Santa Catarina, south Brazil

description: This dataset contains the raw pollen counts of the 50 samples from core SF-5. The sampled core was taken from the upstream of Palmital River's main channel in south Brazil. For each sample, approximately 1 ml of sediment was used for pollen analysis. One tablet of Lycopodium spores containing 20,848 grains was added to each sample as an exotic marker to aid the calculation of pollen concentration (grains/cm3) following the formula: Pollen concentration = Pc ∗ La / Lc ∗ V. Where Pc is the number of fossil pollen counted, La is the number of Lycopodium spores added (20,848), Lc is the number of Lycopodium spores counted, and V is the volume of the sample. Approximately 300 grains of pollen and spores were counted for each sample by using an Olympus Light Microscope with a LC35 camera (3.5-megapixel CMOS sensor) in conjunction with ZEN Blue 2012 imaging software to photograph pollen grains under 1000x magnification. Cluster analysis dendrograms and pollen diagrams were plotted by using TILIA (v.1.7.16).
DOI: 10.6084/m9.figshare.17805485.v1
title: Supplementary Material for: Lack of Increased Risk of Lymphoma with Thiopurine Therapy Regardless of Dose and Duration of Treatment in Japanese Patients with Inflammatory Bowel Diseases

description: <b><i>Background:</i></b> Immunomodulator therapy (e.g., thiopurines) has been linked to an increased malignancy risk, in patients with inflammatory bowel diseases (IBDs), which increases with treatment duration, based on studies mainly in Caucasian patients. However, our previous real-world study, of Japanese patients with IBDs, indicated no overall increased risk of non-Hodgkin lymphoma (NHL) with thiopurine treatment. <b><i>Objectives:</i></b> This subanalysis investigated the influence of thiopurine IBD treatment dose and duration, on incidence of NHL in Japanese patients. <b><i>Method:</i></b> The Medical Data Vision (MDV) claims database (17.8 million patients; April 2008–January 2018) was used to analyze incidence rate ratios (IRRs) of NHL, in eligible patients (≥1 diagnosis of ulcerative colitis or Crohn’s disease) and no malignancy at diagnosis or first prescription of a thiopurine. Age- and sex-adjusted IRRs and 95% confidence interval for NHL were calculated as the incident cases compared in the subgroups versus the overall IBD population. <b><i>Results:</i></b> Among 75,673 patients with IBDs, 103 cases of NHL were recorded. There was no overall increase in the risk of developing NHL among Japanese patients treated with thiopurines. The IRRs relative to the overall IBD population were 1.88, 1.42, and 0.38 for &lt;1 year, 1–3 years, and ≥3 years of thiopurine treatment. There were no differences in NHL incidence when grouping patients by mean daily thiopurine dose prescribed, age, or disease subgroups. <b><i>Conclusion:</i></b> Dose or duration of thiopurine treatment did not explain a lack of increased risk of NHL with thiopurine use in Japanese patients with IBDs.
DOI: 10.6084/m9.figshare.22580914.v1
title: Five leguminosae species

description: this project contain the annotation files of five leguminosae species' genomes. 1. contig.gff.gz, contig.cds.gz, contig.pep.gz were the annotation files of the contig version genome assemblies that assembles by the nanopore long reads. 2. chr.gff.gz, chr.cds.gz, chr.pep.gz were the annotation files of the chromosomes version genome assemblies.
DOI: 10.6084/m9.figshare.23600325.v1
title: Phylogenomic conflict analyses of the plastid and mitochondrial genomes via deep genome skimming highlight their independent evolutionary histories: A case study in the cinquefoil genus <em>Potentilla </em>sensu lato (Potentilleae, Rosaceae)

description: Sequence matrices and phylogenetic trees of the <em>Potentilla</em>
DOI: 10.6084/m9.figshare.26879866.v1
title: Supplementary Material for: Impact of clinical consequences of pulp involvement due to caries on oral health‐related quality of life in children and adolescents: a systematic review and meta-analysis

description: Introduction: Dental caries with pulp involvement potentially impacts the oral health related quality of life (OHRQoL). This meta-analysis aimed to evaluate whether clinical consequences of pulp involvement due to dental caries impacts OHRQoL of children and adolescents. Methods: Observational studies evaluating children/adolescents (Population) with pulp involvement due to caries (Exposition) compared with those without it (Comparison) have more negative impact on their OHRQoL (Outcome). A systematic search was undertaken in August 2022 in seven databases. Alerts were set until August 2023. JBI Critical Appraisal toll for cross-sectional studies was used for methodological quality assessment. Random-effects meta-analyses were performed to calculate mean differences (MD) or standardized mean differences (SMD) of impact on OHRQoL. For studies with dichotomous outcome, meta-analysis calculated the odds ratio (OR). Robustness, heterogeneity, certainty of evidence, and publication bias were evaluated. Confidence interval was 95%. Results: From 29 included studies, 14 assessed preschoolers, nine assessed schoolchildren, four assessed adolescents, and two assessed children/adolescents. PUFA was the main index used to assess the exposure. ECOHIS (preschoolers) and CPQ (children/adolescents) were the main tools used to assess the outcome. Only five articles fully adhered to the quality criteria. The meta-analyses found the following main results: a) preschoolers: MD -10.79 (-16.50; -5.09); b) schoolchildren: MD -5.12 (-7.51; -2.72); c) adolescents: MD -1.86 (-4.59; 0.87); d) overall impact: SMD -2.18; (CI: -3.21;-1.15) and OR 0.52 (CI: 0.30; 0.90). Conclusion: Pulp involvement impacted OHRQoL of children negatively. In adolescents, this impact was not observed. Results must be interpreted with caution due to very low certainty of evidence.
DOI: 10.17632/fj23wz552c
title: MunicipalitiesAndalusiaSpain2019_SimulatedMonitored

description: Excel file with hourly data of indoor air temperature monitored in two public administration buildings in Andalusia in 2019. It also includes the hourly data of the same parameter obtained by simulation with Design Builder.
Four rooms in total, two in each building
DOI: 10.6084/m9.figshare.14558181.v1
title: Streaming Dataset

description: Streaming.mat contains the continuous data from each trial.
DOI: 10.6084/m9.figshare.26044390.v1
title: signal retrieved from wearable ECG device.

description: Данные полученные с портативного кардиоанализатора (одноканальный/4-отведения)
DOI: 10.6084/m9.figshare.27274944.v1
title: Extended data(Moderator guide).docx

description: Key questions for each group(user,former user and non user of fitness tracker) are depicted in this extended data
DOI: 10.6084/m9.figshare.10735652.v2
title: A global database of Paired Resorption Efficiency of Nitrogen and Phosphorus (PRENP, Version 1.0)

description: We complied a global database of Paired Resorption Efficiency of Nitrogen and Phosphorus (PRENP, Version 1.0) in leaves of terrestrial plants based on literature surveyed via Web of Science (http://isiknowledge.com), Google Scholar (https://scholar.google.com) and the China National Knowledge Infrastructure (http://www.cnki.net). The key words ‘nitrogen resorption’ and ‘phosphorus resorption’ were used to search published studies of leaf NRE and PRE. Data were included only when NRE and PRE were measured simultaneously. To avoid misattributing natural nutrient limitation due to anthropogenic disturbances, we excluded data for intensively managed ecosystems (e.g., agroforest, fertilized plantations, sown pastures, croplands and urban forests). Overall, our database includes observations of leaf NRE and PRE across 171 sites. For each site, we first averaged values of NRE (NRE<sub>dom</sub>) and PRE (PRE<sub>dom</sub>) for all reported dominant species, respectively. If data on several forest stands or grassland plots were reported at the same site, NRE<sub>dom</sub> and PRE<sub>dom</sub> were averaged before computing NRE<sub>dom</sub>/PRE<sub>dom</sub>. Site-averaged NRE<sub>dom</sub>/PRE<sub>dom </sub>was then calculated as an indicator of relative nutrient limitation. Please find more information in the Nature Geoscience paper by Du et al. Author's permission is required to use the dataset.
DOI: 10.6084/m9.figshare.12964772.v1
title: DLBCL-Morph

description: A publicly available dataset containing 42 digitally scanned high-resolution tissue microarrays (TMAs) from 209 DLBCL cases at Stanford Hospital. Each TMA was stained for H&E as well as for BCL2, BCL6, MYC, CD10 and MUM1 gene expression. All of the TMAs are accompanied by pathologist-annotated regions-of-interest (ROIs) that indicate areas representative of DLBCL. For each patient in the dataset, we provide survival data, follow-up status, and a wide range of clinical and molecular variables such as age and MYC/BCL2/BCL6 gene translocations. We also segmented out tumor nuclei from ROIs inside the H&E stained TMAs, and provide several geometric features for each tumor nucleus.
DOI: 10.6084/m9.figshare.27194520.v1
title: Staveley et al. Pink salmon in Sweden. qPCR and dPCR raw data

description: A comprehensive eDNA sampling scheme was conducted in 27 river systems in south-western Sweden in 2023, with the aim to detect adult spawning pink salmon. We applied qPCR, dPCR and metabarcoding analysis on aquatic eDNA samples. Results indicated the presence of pink salmon at 22 sites across 10 river systems. QCPR and dPCR raw data are presented here. Metabarcoding data not presented due to zero positive detections of pink salmon from this method.
DOI: 10.6084/m9.figshare.3520967.v1
title: Appendix A. ANCOVA results for the relationship between native species richness and both exotic cover and grazing treatment.

description: ANCOVA results for the relationship between native species richness and both exotic cover and grazing treatment.
DOI: 10.17632/48by2436kf
title: Data for: Analysis of the aero-elastic-wake coupling behavior of wind turbine

description: the first version of the source code of ALFBM
DOI: 10.17632/sm84p6vp26
title: Clinical characteristics of a pediatric patient with heterozygous familial hypobetalipoproteinemia due to a novel APOB variant 

description: Familial hypobetalipoproteinemia (FHBL) is an autosomal codominant disorder usually caused by variants in the APOB gene that frequently interfere with protein length.  Clinical manifestations include malabsorption, nonalcoholic fatty liver disease, low levels of lipid-soluble vitamins, and neurological, endocrine, and hematological dysfunction.  We present clinical data of a pediatric patient with heterozygous familial hypobetalipoproteinemia due to a novel APOB variant.
DOI: 10.17632/zhvszymk7t
title: SEM-EDX data on respirable dust from 25 US coal mines

description: This database contains particle-level information (i.e., size, normalized elemental % values, estimated volume and mass, inferred mineralogy class) on 171 respirable dust samples collected in 25 underground mines in the United States. The data was obtained using two different computer controlled SEM-EDX routines to analyze submicron ("sub") and supramicron ("supra") particles. Information on the mines and underground sampling locations is available in: E. Sarver, C. Keles, S, Ghaychi Afrouz, Particle size and mineralogy distributions in respirable dust samples from 25 US underground coal mines, Int. J. Coal Geol. 247 (2021) 103851. https://doi.org/10.1016/j.coal.2021.103851

Following is a list of definitions for the table headers:
ParticleID = strings the SEM-EDX routine (sub or supra)_sample number_analysis frame number_ particle number
ExcelRow = Row number in original spreadsheet (internal reference only)
SubOrSupra = Analysis routine (submicron analysis or supramicron analysis)
SampleNo = Sample number
SampleName = strings the mine region, sample number, sampling location, and filter number (internal reference only)
Region = Mine Region
Mine = Sampled Mine
Location = Sampling Location
SubCount = total number of particles analyzed by the submicron routine
SupraCount = total number of particles analyzed by the supramicron routine 
SubArea = total area analyzed (square microns) by the submicron routine
SupraArea = total area analyzed (square microns) by the supramicron routine 
SubPLD = particles per analyzed area (#/square micron) for the submicron routine 
SupraPLD = particles per analyzed area (#/square micron) for the supramicron routine 
SubPercent = % of particles in the submicron range
SupraPercent = % of particles in the supramicron range 
Particle = Particle Number
Field = Frame Number
Area = projected area of particle (square microns)
Length = the longest dimension of particle (microns)
Width = dimension of particle perpendicular to length (microns) 
O = normalized % of oxygen in particle
Al = normalized % of aluminum in particle 
Si = normalized % of silicon in particle 
C = normalized % of carbon in particle 
Mg = normalized % of magnesium in particle
Ca = normalized % of calcium in particle
Ti = normalized % of titanium in particle
Fe = normalized % of iron in particle
PAD = projected area diameter (nanometers)
Volume = estimated particle volume (cubic microns) 
Mass = estimated particle mass (micrograms)
Class = Mineralogy class (C = carbonaceous; MC = mixed carbonaceous; ASK = kaolinite-like aluminosilicates; ASO = other silicates; SLO = other silicates ; S = silica; M = heavy minerals; CB = carbonates; O = other
DOI: 10.6084/m9.figshare.14697006.v1
title: Capacity Survey Anonymised Data and Questionnaire

description: Anonymised dataset and survey questionnaire for the paper manuscript entitled: <br>Experiences of assessing mental capacity in England and Wales: A large-scale survey of professionals<br>