cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25888225.v1
title: <b>Intraspecific variation of </b><b><i>Pterocarpus erinaceus</i></b><b> Poir. along an aridity gradient: Insights into its response to drier conditions</b>

description: Description of the studyIntraspecific phenotypic variation is widespread in nature, and understanding its causes and consequences is key to predict the evolutionary trajectories of plant populations and their adaptive responses to environmental stressors. Widely distributed species often encounter broad environmental gradients, imposing differential selective pressures across populations. If there is sufficient genetic variation and the effects of natural selection are stronger than those from neutral evolutionary processes, differences in patterns of selection may lead to adaptive population differentiation. Thus, understanding how species adapt to environmental changes is crucial for effective conservation and habitat restoration. In this regard, our study examines morphological and functional trait variability in <i>Pterocarpus erinaceus</i> Poir., a species with a wide distribution range along the South-North aridity gradient prevailing in Benin.This study was conducted in the Republic of Benin, West Africa, and covered the entire environmental gradient from south to north. Benin is located in the intertropical zone, between latitude 6°30' and 12°30' North and longitude 1° and 3°40' East (Figure 1). The country includes three climate zones, defined based on phytogeographic data and climatic gradient: (i) the Sudanian zone (SZ) in the north (semi-) arid zone (9°45'-12°25'N and 0°45’-3°50’E), (ii) the Sudano-Guinean zone (SGZ) in the sub-humid zone (7°30'-9°45'N and 1°30’ – 3°50’E), and (iii) the Guinean zone (GZ) in the south humid zone (6°25'-7°30'N and 1°45’-2°50’E). Annual rainfall ranges from 800 to 1400 mm from north to south (Adomou, 2005). This rainfall gradient has resulted in the presence of dense deciduous forests in the south and woodlands and savannas in the north (Table 1).We included the data file and the r script.<b>Variables</b> <b>Id : </b>Plot identification code<b>Climate_Zone :</b> Climate Zone<b>Population :</b> Population selection by climate zone<b>TLL:</b> Total Leaf length (cm)<b>PEL: </b>Petiole Length (cm)<b>LEL: </b>Leaflet length<b>LW:</b> Leaflet width (cm)<b>PeL: </b>Petiolule length<b>NL:</b> Number of Leaflet<b>LRCC:</b> Chlorophyll content (%)<b>LM: </b>Leaflet mass (g)<b>LA:</b> Leaflet area (cm<sup>2</sup>)<b>SLA: </b>Specific leaf area (m<sup>2</sup>/g)<b>LMA:</b> Leaf mass per area (g/m<sup>2</sup>)<b>DBH: </b>Diameter at breast height (cm)<b>TH: </b>Total height (m)<b>NB: </b>Number of branches<b>bio_1:</b> Annual mean temperature<b>bio_11:</b> Mean Temperature of Coldest Quarter<b>bio_16:</b> Precipitation of Wettest Quarter<b>bio_2:</b> Mean Diurnal Range (Mean of monthly (max temp - min temp))<b>bio_3:</b> Isothermality<b>bio_12: </b>Annual Precipitation<b>Index_of_Aridity:</b> Aridity Indexe<b>Ele :</b> Altitude<b>GZ :</b> Guinean Zone<b>SGZ : </b>Sudano-Guinean Zone<b>SZ : </b>Sudanian Zone
DOI: 10.6084/m9.figshare.4653838.v1
title: Supplementary Material for: Clinicopathological Features and Prognostic Significance of HER2 Expression in Gastric Cancer

description: <b><i>Background:</i></b> HER2 positivity is reported to be &lt;20% in gastric cancer. Clinicopathological characteristics will be helpful to understand the biological features of HER2-positive gastric cancer. <b><i>Methods:</i></b> A total of 813 gastric cancer patients who underwent HER2 testing between January 2005 and December 2010 were included in this study. <b><i>Results:</i></b> Ninety-five (11.7%) patients had HER2-positive gastric cancer. Elevated serum carcinoembryonic antigen (CEA) concentration [odds ratio (OR), 5.629; p &lt; 0.001] and differentiated histology (OR, 3.717; p = 0.002) were significant predictive factors for HER2 positivity in localized disease. For recurrent or metastatic disease, elevated serum CEA concentration (OR, 2.545; p &lt; 0.001), differentiated histology (OR, 3.299; p &lt; 0.001), pulmonary metastasis (OR, 3.321; p = 0.001), and distant lymph node metastasis (OR, 2.286; p = 0.002) were significant predictive factors. Median disease-free survival (DFS) was shorter in HER2-positive patients than in others, especially in stage I or II disease (24.7 vs. 49.2 months; p &lt; 0.001). Among HER2-negative patients with stage II diseases, patients who received adjuvant chemotherapy had longer DFS than others (42.2 vs. 30.7 months; p = 0.025). <b><i>Conclusions:</i></b> Clinicopathological factors may be useful in predicting the HER2 positivity of gastric cancer. Further studies are needed to understand the molecular basis of HER2-positive gastric cancer.
DOI: 10.6084/m9.figshare.5124616.v1
title: Supplementary Material for: Psychologische Flexibilität messen: Der Fragebogen zu Akzeptanz und Handeln II

description: Medicine
DOI: 10.6084/m9.figshare.14112170.v1
title: P. somerae CFUs/mL Relative to OD600 Data

description: Raw data used to generate CFUs/mL relative to OD<sub>600</sub> figure of <i>P. somerae</i>.
DOI: 10.6084/m9.figshare.21164395.v1
title: Supplementary File 1.zip

description: anttiSMASH analysis results of Burkholderia WPB and AFE strain
DOI: 10.6084/m9.figshare.7907372.v1
title: gVCF_NA18991

description: 1000 Genomes gVCF mapped to hs37d5 for NA18991. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/v398vj34h6
title: Dataset related to MOOCs

description: The dataset presents determinants (i.e. confirmation, learner's satisfaction, perceived usefulness, flow experience and learning self-efficacy) that influencing learners’ intention to continue using massive open online courses (MOOCs) for personal or professional development.
DOI: 10.6084/m9.figshare.13526318.v2
title: Bird communities in African cocoa agroforestry are diverse but lack specialised insectivores

description: Datasets corresponding to manuscript Bird communities in African cocoa agroforestry are diverse but lack specialised insectivores
DOI: 10.6084/m9.figshare.25975120.v5
title: Replication Package

description: License: CC BY 4.0Replication Package/Artifact for the research paper: “That’s my perspective from 30 years of doing this”: An Interview Study on Practices, Experiences, and Challenges of Updating Cryptographic Code<br><br>Content:To support transparency, replication, and metaresearch, we provide the following research artifacts in an online replication package: (1) The consent form, (2) prequestionnaire, (3) interview guide, (4) codebook, and (5) recruitment materials.
DOI: 10.6084/m9.figshare.28902257.v1
title: <b>Data for Dramatic Decline of Orignic Carbon Sink Strength in Big Estuary Driven by Dam Construction: Insights from the Yellow River Estuary</b>

description: <b>Data for Dramatic Decline of Orignic Carbon Sink Strength in Big Estuary Driven by Dam Construction: Insights from the Yellow River Estuary</b>
DOI: 10.6084/m9.figshare.22133021.v1
title: Qualitative data

description: This is qualitative data from the perspectives from multiple stakeholders.
DOI: 10.6084/m9.figshare.24428083.v2
title: DHE calculation information from the<i> Marchantia </i>pangenome paper (https://doi.org/10.1038/s41588-024-02071-4)

description: This item contains scripts and datasets used to calculate Tajima's <i>D</i>, Fay and Wu's <i>H</i> and Zeng's <i>E</i> statistics on SNP data from <i>Marchantia polymorpha </i>(as well as on<i> A. thaliana</i> and<i> M. truncatula</i>). Folder M.polymorpha_file_processing contains scripts used to pre-process the SNP data, DHE_calculation_scripts contains the scripts to calculate <i>D</i>, <i>H</i> and <i>E</i> on unfolded SNP dataset (with ancestral allele known) and to calculate Tajima's <i>D</i> on the whole SNP dataset. The same calculations were also performed on<i> M. truncatula</i> and <i>A. thaliana</i> SNP data, downloaded at the links specified in the read_me_links file. The last folder contains vcf files of the outgroups used for the calculation on A. thaliana. Those VCFs were producted based on sequencing data from 30 <i>A. halleri</i> (PRJNA592307) and 29 <i>A. lyrata </i>(PRJNA357372), respectively mapped on the TAIR10 genome and for which polymorphic positions from the<i> A. thaliana</i> SNP dataset were called.
DOI: 10.6084/m9.figshare.24593205.v1
title: CITES Listed Reptile Trade 2000-2020

description: The data used in this dataset was retrieved from the CITES Trade Database at "trade.cites.org". This dataset contains exporter-reported directional trade records for CITES-listed reptiles between 2000 and 2020. This dataset only contains trade records with the source code (C, D, F, R, W, and X) and purpose code (P or T). All records were converted to whole organism equivalents.
DOI: 10.6084/m9.figshare.24759666.v1
title: Data from: Nanoscale twisting dynamics of Dynamin1 helices reveals GTP-driven reassembly coupled to membrane fission

description: Data from: Nanoscale twisting dynamics of Dynamin1 helices reveals GTP-driven reassembly coupled to membrane fission.
DOI: 10.6084/m9.figshare.25040261.v3
title: <b>Targeted </b><b>Small Molecule Inhibitors Blocking the Cytolytic Effects of Pneumolysin and Homologous Toxins</b>

description: This work established CDC toxins as small molecule protein targets by using the UDP sequence of the cholesterol binding domain as binding site.
DOI: 10.6084/m9.figshare.28816997.v1
title: Supplementary Material for: Longitudinal Changes in Peritoneal Transport and Their Impact on Dialysis Outcomes: A Machine Learning Approach integrating Clinical and Biomarker Data

description: Introduction: Longitudinal changes in peritoneal transport patterns and the predictive role of dialysate biomarkers remain poorly understood. This study assessed the impact of peritoneal equilibration test (PET) trajectory changes on clinical outcomes, explored biomarker contributions, and developed a machine learning-based model to predict peritoneal transport transitions.
Methods: This prospective study enrolled peritoneal dialysis (PD) patients aged ≥ 18 years from 2016 to 2017, with follow-up until 2020. Patients with missing PET data or acute illness within two months of PET were excluded. Based on longitudinal PET changes, patients were classified into four trajectory groups: Persistent High (HH), High to Low (HL), Low to High (LH), and Persistent Low (LL). Clinical outcomes included technique failure and mortality. Dialysate biomarkers were quantified using ELISA and standardized by appearance rates (AR). A Support Vector Machine (SVM) model was developed to predict PET trajectory changes using clinical and biomarker data. Model performance was assessed using accuracy, precision, recall, F1-score, and area under the curve (AUC).
Results: Among 132 eligible patients, cumulative risk analysis identified the HH group as having the highest risk of adverse outcomes, followed by LH, LL, and HL groups (p = 0.009). Based on prognostic trends, HH and LH were reclassified as the Future High (FH) group, while HL and LL were grouped as the Future Low (FL) group. The FH group had a significantly higher risk of adverse outcomes than the FL group (HR: 7.87, 95% CI: 1.81-34.10, p = 0.005). Matrix metallopeptidase 2 (MMP2) AR and plasminogen activator inhibitor 1 (PAI-1) AR differed significantly across PET trajectory groups (p &lt; 0.001 for both), with the HH group exhibiting the highest biomarker levels (MMP2 AR: 195.0 ng/min, IQR: 145.2-230.0; PAI-1 AR: 2.63 ng/min, IQR: 1.29-4.51). The SVM model integrating clinical and biomarker data outperformed models using clinical data alone, achieving a higher AUC (0.87 vs. 0.71). Risk visualization curves identified males with elevated biomarkers as particularly vulnerable to transitioning to high transporter status.
Conclusions: Sustained or transitioning to a high transporter status significantly increases the risk of adverse outcomes in PD patients. Higher MMP2 AR and PAI-1 AR levels are associated with an increased risk of adverse PET trajectory changes, enhancing risk stratification. Integrating biomarker-based predictive models with clinical data improves prognostic accuracy, supporting early intervention strategies for high risk patients.
DOI: 10.6084/m9.figshare.7472156.v1
title: Supplementary Material for: Cubilin Single Nucleotide Polymorphism Variants are Associated with Macroangiopathy While a Matrix Metalloproteinase-9 Single Nucleotide Polymorphism Flip-Flop may Indicate Susceptibility of Diabetic Nephropathy in Type-2 Diabetic Patients

description: <b><i>Aim:</i></b> Aim of this study was to investigate the association of genetic variants of functional polymorphisms of matrix metalloproteinase and Cubilin (CUBN) with diabetic nephropathy (DN), end-stage renal disease (ESRD), and risk of cardiovascular disease (CVD) in Caucasian type 2 diabetes (T2D) patients. <b><i>Methods:</i></b> 472 T2D-patients were genotyped for 3 single-nucleotide polymorphisms (SNPs; MMP-2 [rs2285053], MMP-9 [rs17576] and CUBN [rs1801239]). Genotyping was carried out by allelic discrimination using TaqMan SNP-genotyping-assay. <b><i>Results:</i></b> MMP-9 (<i>Gln</i>279<i>Arg)</i> AA-genotype (OR 0.17 [0.04–0.62, <i>p</i> = 0.008]) and the time elapsed since diagnosis of T2D without onset of proteinuria (OR 0.87 [0.79–0.97, <i>p</i> = 0.008]) were found to be independently associated with reduced risk of susceptibility to DN. On the contrary higher stages of chronic kidney disease (OR 1.93 [1.15–3.23], <i>p</i> = 0.012) and the presence of MMP-9 GG-genotype were independently associated with DN (OR 6.07 [1.60–22.99], <i>p</i> = 0.008). The CUBN CC or C-risk-allele of rs1801239 was associated with ESRD (OR 2.04 [1.07–3.87], <i>p</i> = 0.03) and peripheral artery disease (OR 2.08 [1.12–3.88], <i>p</i> = 0.021). We could not find an association with MMP-2, MMP-9, or CUBN with CVD in a composite clinical endpoint model. <b><i>Conclusions:</i></b> This study highlights that MMP-9 or CUBN-SNPs may exert effects on risk of susceptibility to DN or ESRD. We provide novel evidence on genetic susceptibility for macroangiopathy in patients with a missense variant of CUBN (<i>Ile</i>2984<i>Val</i>) in patients with T2D.
DOI: 10.17632/jwyy9np4gv
title: A dataset of lung sounds recorded from the chest wall using an electronic stethoscope

description: Annotated audio files (separate combined annotation file) of lung sounds as recorded from various vantage points of the chest wall. The annotation includes the sound type (Insipratory: I, Experiatory: E, Wheezes: W, Crackles: C , N:Normal), the diagnosis as decided by a specialist (Asthma, COPD, BRON, heart failure, lung fibrosis, etc.), and the location on the chest wall from which the recording was taken (Posterior: P Lower: L Left: L Right R, UPPER: U, ANTERIOR: A, MIDDLE: M). The audio file names are coded: 1. Filter type; B: BELL 20-200Hz, Diaphragm 100-500 Hz, Extended range 50-500 Hz. 2. Patient number: P1-P112. The zipped folder "Audio Files.zip" contains the .wav files, whereas "Stethoscope Files.zip" contains the original records imported from the stethoscope.
DOI: 10.6084/m9.figshare.10262507.v1
title: Supplementary Material for Multiple Hypothesis Testing with Persistent Homology

description: This is the simulated data used for the computations in the paper Multiple Hypothesis Testing with Persistent Homology by Mikael Vejdemo-Johansson and Sayan Mukherjee.
DOI: 10.6084/m9.figshare.21507774.v1
title: First Report of Chromosome-Level Genome Assembly for Lance Asiabell (Codonopsis lanceolata), A Medicinal and Vegetable Plant in the Campanulaceae Family

description: Files for the genome sequence, annotated information, and functional annotation of <em>Codonopsis lanceolata</em> File Description Clanceolata_genome_20200909.zip: - Genome sequence and annotation information (gff, cds, protein) of Codonopsis lanceolata Clanceolata_functional_annotation_20221106.zip: - Function annotation filesof gene set predicted in genome sequence of Codonopsis lanceolata
DOI: 10.6084/m9.figshare.22154576.v1
title: SI Appendix for The build-up of the present-day tropical diversity of tetrapods

description: SI Appendix for Quintero, Landis, Jetz & Morlon "The build-up of the present-day tropical diversity of tetrapods" PNAS <em>e2220672120</em>. Details in the README.txt
DOI: 10.17632/g887mjj9c4
title: Steelwar Research Project - Publications

description: STEELWAR – Advanced structural solution for automated STEELrack supported WARehouses is a European Research Project funded by the Research Fund for Coal and Steel (RFCS) that aims at the definition of specific design rules for Automated Rack Supported Warehouses (ARSWs). These constructions are huge steel buildings where palletized goods are stored before distribution, and steel racks, where pallets are placed, also constitute the main structure of the warehouse. This makes ARSWs peculiar buildings with very distinctive and particular structural characteristics and needs, which make standards and limitations for steel structures hardly applicable. 
STEELWAR research project started on the 1st of July 2017 and was concluded on the 31st of March 2022. The research team is composed of Academic Partners, Industrial Partners (IP), and a company expert on the logistic field. The Academic Partners are: University of Pisa (which is also the coordinator of the project), FINCON consulting Italia S.r.l, National Technical University of Aachen, Rheinisch-Westfaelische Technische Hochschule Aachen, Hasselt University, University of Florence. The Industrial Partners are: Noega Systems S.L., Modulblok S.p.A., Sacma S.p.A., Nedcon B.V., Mecalux S.p.A. These IPs are companies that design, produce, and sell traditional racks and ARSWs at least all over Europe. The company expert in logistics is System Logistics S.p.A. Finally, SCL Ingegneria Strutturale is a subcontractor of Fincon expert in racks structures. One of the strongest points of the STEELWAR project is the participation of Industrial Partners. This gave continuous occasion of discussion and drove all the design proposals to the right direction in terms of industrial feasibility. For this reason, all the outcomes of STEELWAR project are surely applicable for practical purposes and provide a wide and reference pre-normative framework dedicated specifically to ARSWs, which till now is absent.
Publications and any other aspects concerning the dissemination of results are here collected.
DOI: 10.17632/v7tdcnzpv2
title: Data for: Pelagic clays as archives of marine iron isotope chemistry

description: Results, including Fe and Os isotopes as well as element concentrations, of the leach experiment and downcore samples from Site U1366.
DOI: 10.24376/rd.sgul.9699371.v2
title: Data and supporting codebook from the Newcotiana Project

description: This data set includes the codes and references generated through the analysis of expert interviews for the Newcotiana project.<br><br>Included in the data package is the coding 'tree' used in the analysis of expert interviews during the Newcotiana project as well as the interview guide.<br><br>More information on the project is available via the link referenced below.<br>
DOI: 10.6084/m9.figshare.14709270.v1
title: Supplementary Material

description: Attachment material to the article "Screening and interaction analysis identify genes related to anther dehiscence in Solanum melongena L."
DOI: 10.6084/m9.figshare.17075717.v1
title: vacancy_skills_data

description: 3 datasets representing processed skill-sets for job advertisements obtained from HeadHunter online hiring platform (collected with open API https://dev.hh.ru/) for specialists in Information Technologies (in accordance with classifier https://github.com/hhru/api/blob/master/docs_eng/specializations.md). Description of main fields for vacancies is available via link https://github.com/hhru/api/blob/master/docs_eng/vacancies.md.<br><b>Datasets</b>:<br>1. "<i>vacancy_skill.csv</i>" - two column dataset, representing vacancy ID ("vacid") and processed skill name [in-demand skill] ("lv");<br>2. "<i>sh_soft_clusters.csv</i>" - three column dataset, representing initial formulations (translated) of "soft" skills ("V1"), the frequency of occurrence in the sample ("V2"), the etalon name [generalized categories of "soft" skills] ("ETALON");<br>3. "<i>jaccard_matrix.csv</i>" - dissimilarity square matrix between processed skill names (1,730 X 1,730) with Jaccard distances (computed by comparison of vacancy ID sets for each skill pair) [the first row and the first column contain skill names].
DOI: 10.6084/m9.figshare.28830974.v1
title: External data

description: Prediction models
DOI: 10.6084/m9.figshare.24009234.v2
title: The General Public as well as Physiotherapists Evaluate Spinal Flexion as Dangerous Regardless of Their Own Low Back Pain History

description: This table contains participants' demographic data and scores from evaluation of different postures from images on rating scales ranging from 0-10 with 0 representing “safety” and 10 representing “danger”.<br>"LBP" stands for low back pain"NRS" stands for 11-point Numeric Rating Scale"CZ" stands for the Czech Republic; "SK" stands for Slovakia."Current_LBP" is a dichotomously scored item - current low back pain lasting longer than one week of at least moderate intensity (&gt;3/10 on 11-point Numeric Rating Scale)"Past_LBP" is a dichotomously scored item - history of low back pain lasting longer than one week of at least moderate intensity (&gt;3/10 on 11-point Numeric Rating Scale)"Current_NRS" is current LBP intensity measured with 11-point Numeric Rating ScaleColumns J-O are individual scores for images of different postures without given context (rating scales ranging from 0-10 with 0 representing “safety” and 10 representing “danger”)Columns P-U are individual scores for images of different postures in the context of LBP (rating scales ranging from 0-10 with 0 representing “safety” and 10 representing “danger”)"Y" stands for "yes"Red background color signifies exclusion and column Y gives the reason for this exclusion<br>
DOI: 10.6084/m9.figshare.24457297.v1
title: DFT dataset for figures for directgap strain-doped Ge

description: DFT results used for plotting figures in the manuscript "direct bandgap emission from strain-doped germanium".
DOI: 10.6084/m9.figshare.740315.v1
title: ImpactStory grant proposal to the Sloan Foundation, 2013

description: Grant proposal submitted to the Alfred P. Sloan Foundation in April 2013 from ImpactStory. The grant was awarded in June 2013. See http://blog.impactstory.org/2013/06/17/sloan/ for more details.
DOI: 10.6084/m9.figshare.7649024.v1
title: FACIALRECFROMDNA

description: Supplementary illustrations, data and code for: Facial recognition from DNA using Face-to-DNA-classifiers
DOI: 10.6084/m9.figshare.8298041.v1
title: Supplemental Table 4_2530 from published gene lists_v4.xlsx

description: <b>Supplemental Table 4_2530 from published gene lists</b>
DOI: 10.17632/zhfbwp6y9y
title: Sentiment_Analysis

description: The data presented contains the process from the capture of financial data, sustainability, and sentiment indicators, to the conversion into the scales and indices used for modeling with Partial Least Structural Equation Modeling.