cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13952352
title: Data From: Oatk - a de novo assembly tool for complex plant organelle genomes

description: This reposity hosts the data for 195 plant organelle genome assemblies generated in the manuscript "Oatk: a de novo assembly tool for complex plant organelle genomes". The sequence data were produced by the Tree of Life programme at the Sanger Institute, mostly from the Darwin Tree of Life (DToL) project, including 24 monocots, 154 eudicots, 16 mosses and one liverwort. See SAMPLE_LIST file for descriptions of these species.

In each species subfolder, below files are included.



PLTD.fasta                   Plastome assembly file in FASTA format

PLTD.annot.bed          Plastome assembly annotation file in BED format

MITO.fasta                   Mitogenome assembly file in FASTA format

MITO.annot.bed          Mitogenome assembly annotation file in BED format

MBG.gfa                         Genome assembly file in GFA format generated with MBG

PMAT.gfa                       Genome assembly file in GFA format generated with OATK

OATK.gfa                       Genome assembly file in GFA format generated with PMAT (may not exist)


 

Updates in the New Version:

In the previous version, our raw PacBio HiFi read pre-processing pipeline had screened out some reads that it erroneously thought contained HiFi adapter sequence, which led to the gaps in the Hibiscus plastomes. We now fixed this and have rerun all the assemblies that led to any linear organelle components (37 species). All plastomes remain unchanged except for the three Hibiscuses, which are now also circular. Thirteen mitogenomes changed, with six of them now becoming circular.
DOI: 10.5281/zenodo.13952353
title: Data From: Oatk - a de novo assembly tool for complex plant organelle genomes

description: This reposity hosts the data for 195 plant organelle genome assemblies generated in the manuscript "Oatk: a de novo assembly tool for complex plant organelle genomes". The sequence data were produced by the Tree of Life programme at the Sanger Institute, mostly from the Darwin Tree of Life (DToL) project, including 24 monocots, 154 eudicots, 16 mosses and one liverwort. See SAMPLE_LIST file for descriptions of these species.

In each species subfolder, below files are included.



PLTD.fasta                   Plastome assembly file in FASTA format

PLTD.annot.bed          Plastome assembly annotation file in BED format

MITO.fasta                   Mitogenome assembly file in FASTA format

MITO.annot.bed          Mitogenome assembly annotation file in BED format

MBG.gfa                         Genome assembly file in GFA format generated with MBG

PMAT.gfa                       Genome assembly file in GFA format generated with OATK

OATK.gfa                       Genome assembly file in GFA format generated with PMAT (may not exist)
DOI: 10.5281/zenodo.15053552
title: Data From: Oatk - a de novo assembly tool for complex plant organelle genomes

description: This reposity hosts the data for 195 plant organelle genome assemblies generated in the manuscript "Oatk: a de novo assembly tool for complex plant organelle genomes". The sequence data were produced by the Tree of Life programme at the Sanger Institute, mostly from the Darwin Tree of Life (DToL) project, including 24 monocots, 154 eudicots, 16 mosses and one liverwort. See SAMPLE_LIST file for descriptions of these species.

In each species subfolder, below files are included.



PLTD.fasta                   Plastome assembly file in FASTA format

PLTD.annot.bed          Plastome assembly annotation file in BED format

MITO.fasta                   Mitogenome assembly file in FASTA format

MITO.annot.bed          Mitogenome assembly annotation file in BED format

MBG.gfa                         Genome assembly file in GFA format generated with MBG

PMAT.gfa                       Genome assembly file in GFA format generated with OATK

OATK.gfa                       Genome assembly file in GFA format generated with PMAT (may not exist)


 

Updates in the New Version:

In the previous version, our raw PacBio HiFi read pre-processing pipeline had screened out some reads that it erroneously thought contained HiFi adapter sequence, which led to the gaps in the Hibiscus plastomes. We now fixed this and have rerun all the assemblies that led to any linear organelle components (37 species). All plastomes remain unchanged except for the three Hibiscuses, which are now also circular. Thirteen mitogenomes changed, with six of them now becoming circular.
DOI: 10.15468/dl.r3pezm
title: Occurrence Download

description: A dataset containing 2008996 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chalcophorotaenia castanea (Carter, 1916), Castiarina stellata (Barker, 1986), Mcateella esperancensis Elias & Cassis, 2012, Putoniessa nigra (Walker, 1862), Melaleucoides systenae Schuh & Weirauch, 2010, Melaleucococcus hirtipectus Bhatti, 1990, Pseudaleuroplatus kiensis Martin, 1999, Melaleucoides rhaphiophyllae Schuh & Weirauch, 2010, Thaumastocoris petilus Drake & Slater, 1957, Ipo minor Evans, 1969, Ipo moorei Evans, 1969, Lepidosaphes spinosa (Fuller, 1899), Bemisia subdecipiens Martin, 1999, Lamproceps australis Woodward, 1980, Paradorydium viride (Evans, 1936), Pascoepus nymphias (Kirkaldy, 1907), Austrimonus melaleucae (Kirkaldy, 1907), Boreioglycaspis melaleucae Moore, 1964, Notothixos incanus (Hook.) Oliv., Lophodiplosis cornuata Gagné, 1997, Bubastes suturalis Carter, 1915, Bubastes cylindrica Macleay, 1888, Pseudotargionia marginata Brimblecombe, 1956, Phyllolyma maculata Taylor, 1990, Boreioglycaspis muminae (Moore, 1970), Boreioglycaspis devicola (Moore, 1970), Ipoides melaleucae Evans, 1947, Boreioglycaspis abudicola (Moore, 1970), Leucophoroptera quadrimaculata Poppius, 1921, Melaleucococcus phacelopilus Bhatti, 1990, Leptospermonastes fasciatus Taylor, 1990, Boreioglycaspis denigrata (Moore, 1970), Castiarina parvula (Deuquet, 1956), Hylaeus ruficeps (Smith, 1853), Megachile erythropyga Smith, 1853, Agriopocoscelis elongatus Brailovsky & Cassis, 1999, Austronysius sericus Ashlock, 1967, Melaleucococcus nodosus Bhatti, 1990, Myrascia megalocentra Meyrick, 1889, Cryptophasa nubila (Lucas, 1894), Leiothlypis ruficapilla ridgwayi (van Rossem, 1929), Leiothlypis celata lutescens (Ridgway, 1872), Nectarinia kilimensis Shelley, 1885, Pseudococcus longispinus (Targioni Tozzetti, 1867), Cardellina pusilla (A.Wilson, 1811), Boucekelimus elongatus Kim & La Salle, 2005, Orasemorpha didentata (Girault, 1940), Gastrancistrus albicornis (Girault, 1913), Aprostocetus saintpierrei (Girault, 1913), Paraenasomyia orro Girault, 1915)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2008996 records from 244 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011495-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15573116
title: Dataset of UEQ Plus Police Apps
DOI: 10.5281/zenodo.15573117
title: Dataset of UEQ Plus Police Apps
DOI: 10.15468/dl.8vy9td
title: Occurrence Download

description: A dataset containing 15723571 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((38.000 85.000, -27.000 85.000, -27.000 56.000, 38.000 56.000, 38.000 85.000))",
 "Year 1980-1989"
 ]
}

 The dataset includes 15723571 records from 1187 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009734-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9kread
title: Occurrence Download

description: A dataset containing 22848418 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((38.000 85.000, -27.000 85.000, -27.000 56.000, 38.000 56.000, 38.000 85.000))",
 "Year 1990-1999"
 ]
}

 The dataset includes 22848418 records from 1369 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009596-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yvbmqr
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Peucaea aestivalis (M.H.K.Lichtenstein, 1823)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Year is greater than or equal to 1810",
 "Year is less than or equal to 2019",
 "Month is greater than or equal to April",
 "Month is less than or equal to September",
 "EventDate is not null",
 "Country is United States of America",
 "Geometry POLYGON((-63 22, -63 51, -126 51, -126 22, -63 22))"
 ]
}

 The dataset includes 145 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011102-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cvjfp8
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus aucheri Jaub. & Spach"
 ]
}

 The dataset includes 99 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011104-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/a8qse-rgy95
title: Campylobacter jejuni

description: Session notes: High magnification tomograms of whole WT Campylobacter cells. Tilt series notes: WT Campylobacter Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-02-16</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-114/rawdata/</p>11feb16a_WTCampy_207.st,  Tilt Series (Pixel Size 0.512 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-114/rawdata/11feb16a_WTCampy_207.st"
        > <i class="download icon"></i> Download </a></p>

        11feb16a_WTCampy_207_SIRT.rec,  Reconstruction (Pixel Size 0.512 nm), 216.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-114/3dimage_21599/11feb16a_WTCampy_207_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/yk5w4-c1886
title: Salmonella typhimurium

description: Session notes: Salmonella minicells for fliL flagella, and T3SS. Auto-reconstructed to pixel size 5.18, then binned 2x further, low-pass filtered 0.33, 0.025; gold beads detected 24pix, erased 34pix. Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-03-09</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-03-09-34/rawdata/</p>12mar09b_fliL_0034.st,  Tilt Series (Pixel Size 0.512 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-03-09-34/rawdata/12mar09b_fliL_0034.st"
        > <i class="download icon"></i> Download </a></p>

        12mar09b_fliL_0034.rec,  Reconstruction (Pixel Size 1.036 nm), 92.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-03-09-34/3dimage_22705/12mar09b_fliL_0034.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2x3tw-xp469
title: Campylobacter jejuni

description: Session notes: High magnification tomograms of whole FlgP mutant Campylobacter cells. Tilt series notes: Cell pole in a hole. Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2010-08-26</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-08-26-3/rawdata/</p>10aug26a_flgP_Campy_005.st,  Tilt Series (Pixel Size 0.512 nm), 612.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-08-26-3/rawdata/10aug26a_flgP_Campy_005.st"
        > <i class="download icon"></i> Download </a></p>

        10aug26a_flgP_Campy_005_bin2x_SIRT.rec,  Reconstruction (Pixel Size 1.024 nm), 27.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-08-26-3/3dimage_21117/10aug26a_flgP_Campy_005_bin2x_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/pf4zz-rqy16
title: Campylobacter jejuni

description: Session notes: High magnification tomograms of whole WT Campylobacter cells. Tilt series notes: WT Campylobacter Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-02-16</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-78/rawdata/</p>11feb16a_WTCampy_099.mrc,  Tilt Series (Pixel Size 0.512 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-78/rawdata/11feb16a_WTCampy_099.mrc"
        > <i class="download icon"></i> Download </a></p>

        11feb16a_WTCampy_099_SIRT.rec,  Reconstruction (Pixel Size 0.512 nm), 968.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-78/3dimage_21525/11feb16a_WTCampy_099_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6r6h5-azp48
title: Campylobacter jejuni

description: Session notes: Medium magnification tomograms of fliI knockout Campylobacter cells Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-04-12</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-04-12-35/rawdata/</p>11apr12a_fliI_027.st,  Tilt Series (Pixel Size 0.774 nm), 721.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-04-12-35/rawdata/11apr12a_fliI_027.st"
        > <i class="download icon"></i> Download </a></p>

        11apr12a_fliI_027.rec,  Reconstruction (Pixel Size 1.548 nm), 22.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-04-12-35/3dimage_22815/11apr12a_fliI_027.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.xs4tph
title: Occurrence Download

description: A dataset containing 5807 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thymelaea tartonraira"
 ]
}

 The dataset includes 5807 records from 148 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037872-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/wq5nc-es585
title: Salmonella typhimurium

description: Session notes: Salmonella fliHIJ knockout minicells Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-02-04</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor3</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-04-3/rawdata/</p>11feb04d_cartridge4_012.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-04-3/rawdata/11feb04d_cartridge4_012.mrc"
        > <i class="download icon"></i> Download </a></p>

        11feb04d_cartridge4_012_full.rec,  Reconstruction (Pixel Size 1.548 nm), 838.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-04-3/3dimage_21271/11feb04d_cartridge4_012_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/enx4n-jt998
title: Campylobacter jejuni

description: Session notes: flgP deletion Campy mutants Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-08-10</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: -1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-08-10-40/rawdata/</p>11aug10a_flgP_0051.mrc,  Tilt Series (Pixel Size 0.512 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-08-10-40/rawdata/11aug10a_flgP_0051.mrc"
        > <i class="download icon"></i> Download </a></p>

        11aug10a_flgP_0051_bin2x_SIRT_trim.rec,  Reconstruction (Pixel Size 1.024 nm), 28.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-08-10-40/3dimage_22045/11aug10a_flgP_0051_bin2x_SIRT_trim.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/j3ycv-5m154
title: Campylobacter jejuni

description: Session notes: High magnification tomograms of whole WT Campylobacter cells. Tilt series notes: WT Campylobacter Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-02-16</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-168/rawdata/</p>11feb16a_WTCampy_206.st,  Tilt Series (Pixel Size 0.512 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-168/rawdata/11feb16a_WTCampy_206.st"
        > <i class="download icon"></i> Download </a></p>

        11feb16a_WTCampy_206_SIRT.rec,  Reconstruction (Pixel Size 0.512 nm), 191.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-168/3dimage_21721/11feb16a_WTCampy_206_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/f4sae-kp777
title: Campylobacter jejuni

description: Session notes: Auto-reconstruct 0.28, 0.025; auto-erase golds; SIRT reconstruction Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-04-20</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-20-11/rawdata/</p>12apr20b_pflA_0006.st,  Tilt Series (Pixel Size 0.774 nm), 735.0 MB  
        
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        12apr20b_pflA_0006.rec,  Reconstruction (Pixel Size 1.56 nm), 14.0 MB  
        
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