cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.6pk5d/8
title: Individual level data from low elevation Colorado garden 2012 cohort

description: Individual level data from low elevation Colorado garden 2012 cohort
DOI: 10.5061/dryad.6pk5d/9
title: Individual level data from high elevation Colorado garden 2012 cohort

description: Individual level data from high elevation Colorado garden 2012 cohort
DOI: 10.5061/dryad.6pp3d/1
title: DATA of the study “Extreme climate events and individual heterogeneity shape life history traits and population dynamics.” by Stéphanie Jenouvrier, Clara Péron and Henri Weimerskirch. Ecological Monographs 2015

description: This folder contains the data used to draw figure, calculate foraging trips, body conditions and demographic parameters of the study. figure 1 and 2: see folder foraging_datafigure 3: VitalRates.xls (raw data in folder demographic_data and files summarizing the statistical model developed with software Esurge {Program E-Surge: A Software Application for Fitting Multievent Models Rémi Choquet, Lauriane Rouan, Roger Pradel 2009})figure 4: lambda_det.xlsfigure 5 to 7: SADS_sensitivities.xlsfigure 8: Lambda_sto.xlsTable 1: bodyconditions.xls (raw data in folder body conditions)
DOI: 10.5061/dryad.7369p/1
title: MET_GBS_data_crfilt_.75_allchrom.hmp.txt

description: Post-imputation GBS data for the IRRI breeding population used in Spindel et al., 2015 and Begum and Spindel et al., 2015 (with additional filtering, see papers for details). GBS dataset contains all SNPs with call rates &gt;= .75 and all individuals with missing data &lt; .6
DOI: 10.5061/dryad.7369p/2
title: MET_crfilt_.90_outliers_removed_for_RRBlup

description: Post-imputation GBS dataset used specifically for GS cross-validation in Spindel et al., 2015. Dataset contains all markers with call rates &gt;= .9 and lines that were included in the GS analysis (i.e., sub-population outliers are removed from this dataset). The data are formatted for use with the R rrBLUP package.
DOI: 10.5061/dryad.7369p/3
title: binned_subsets_2_14

description: contains the evenly distributed genotype subsets used in Spindel et al., 2015
DOI: 10.5061/dryad.7369p/4
title: random_subsets

description: contains the randomly distributed genotype subsets used in Spindel et al., 2015
DOI: 10.5061/dryad.8112f/1
title: Trees

description: Tree files (.tre) of alternative analyses for all five distinct datasets. Files contain only a single tree (consensus tree if more than one equally parsimonious tree was recovered) and include support values. Jackknife for parsimony analyses, Bootstrap for maximum likelihood analyses.
DOI: 10.5061/dryad.8112f/2
title: Raw Anchored Phylogenomic loci alignments

description: These alignments contain the raw sequences, i.e., prior to trimming. Alignments were generated in MUSCLE.
DOI: 10.5061/dryad.8112f/3
title: Datasets

description: Contain all five alternative datasets used for the analyses. Description of the datasets are given in the text (see Figure 2).
DOI: 10.5061/dryad.8112f/4
title: Supporting Information - Table S1

description: Metadata for samples included in phylogenetic analyses -- Voucher Specimen, Locality, GenBank Accession Number. This file is the same as the one available at Wiley Online Library and published together with the manuscript (supporting Information Table S1). It is reproduced here as a backup for the original.
DOI: 10.5061/dryad.8112f/5
title: Supporting Informatoion - Text S1

description: Material and methods -- additional details on sequencing methods; primer sequences and references. This file is the same as the one available at Wiley Online Library and published together with the manuscript (supporting Information Text S1). It is reproduced here as a backup for the original.
DOI: 10.5061/dryad.8112f/6
title: Supporting Information - Text S2

description: Trimming patterns for Anchored Phylogenomic loci. This file is the same as the one available at Wiley Online Library and published together with the manuscript (supporting Information Text S2). It is reproduced here as a backup for the original.
DOI: 10.5061/dryad.8jq98/1
title: Meloro-et-al_Form_143Primates

description: 2D landmark Procustes coordinates and PC scores of primate mandibles belonging to 143 species. The procustes coordinates can be manipulated to make ".NTS" files suitable for tps series and for the R package geomorph.
DOI: 10.5061/dryad.8jq98/2
title: 143_Primates_Phylo

description: Phylogenetic tree in nexus format suitable for Mesquite describing evolutionary relationship for 143 primates. The topology and branch lenghts are based on on Springer et al 2012, PLoS One, 7:e49521.
DOI: 10.5061/dryad.8jq98/3
title: 143_Primates_R

description: Phylogenetic tree in nexus format suitable for R describing evolutionary relationship for 143 primates. The topology and branch lenghts are based on on Springer et al 2012, PLoS One, 7:e49521.
DOI: 10.5061/dryad.8jq98/4
title: Anthropoids

description: Phylogenetic tree in nexus format suitable for Mesquite describing evolutionary relationship for 114 anthropoids. The topology and branch lenghts are based on on Springer et al 2012, PLoS One, 7:e49521.
DOI: 10.5061/dryad.8jq98/5
title: Catarrhini

description: Phylogenetic tree in nexus format suitable for Mesquite describing evolutionary relationship for 82 catarrhines. The topology and branch lenghts are based on on Springer et al 2012, PLoS One, 7:e49521.
DOI: 10.5061/dryad.b02tf/1
title: dantec_jecol_2015_data_all

description: The data file contains all data used in the article, especially as described in the figures (including supplementary information).Each individual file contains a readme sheet.
DOI: 10.5061/dryad.b6928/1
title: ddPCR-dropletIntensities

description: Droplet digital PCR result files: raw unprocessed droplet intensity data and normalized data (see publication for details).
DOI: 10.5061/dryad.dv44b/1
title: Alignement

description: This is the complete (113 taxa, 1937 characters) alignment on which the paper is base in nexus format. Exclusion set is in the MrBayes block
DOI: 10.5061/dryad.dv44b/2
title: Fig 1 tree

description: Reduced taxa tree shown in Fig 1 (1a and1 b) with pp support values in .tre format
DOI: 10.5061/dryad.dv44b/3
title: Suppl_Fig_1

description: Supplementary Fig1 tre in .tre format with branch support. All taxa included.
DOI: 10.5061/dryad.gt413/11
title: story_features
DOI: 10.5061/dryad.p9h8g/1
title: All data for Transgenerational Effects manuscript

description: All data for the manuscript in an Excel file. Details can be found in the first spreadsheet and ESM.
DOI: 10.5061/dryad.r5j90/1
title: Climate and website visit data for multiple cities

description: The archive contains the following files:-analysis_government_sites.R: code for our analysis of visits to government websites -analysis_lashou.R: code for our analysis of the lash shopping dataset-analysis_transport_sites.R: code for our analysis of visits to public transport websites-data_government_sites (directory): contains number of daily visits to various government websites, as reported by Alexa.-data_transport_sites  (directory): contains number of daily visits to various public transport websites, as reported by Alexa-data_weather.csv: daily weather data, analysed in conjunction with the shopping dataset-results_government_sites.csv: table summarising the results of analysing visits to government websites-results_transport_sites.csv: table summarising the results of analysing visits to public transport websites
DOI: 10.5061/dryad.rt1np/1
title: For Dryad - Power and Holman 2015 - mutagenesis and sexual selection

description: Each row describes fitness measurements on one female (n=78 females). Treatment: The sexual selection treatment (present/absent). Replicate: The replicate of the experiment (replicate 1 used beetles from the M2 stock, rep 2 from the M3 stock). Columns 3-5 give the number of eggs that eclosed into adults, the number of eggs that we checked for survival, and the proportion of eggs reaching adulthood (i.e. the ratio columns 3 and 4). Columns 6-8 give the number of sons and daughters produced, and the sum of these (i.e. total progeny production). The last column gives the copulation duration.
DOI: 10.5061/dryad.t23n3/1
title: Data from: On the Helmert-blocking Technique: its acceleration by Block Choleski decomposition and formulae to insert observations into an adjusted network

description: It contains the computation of stats and results of simulations besides the Fortran codes built.
DOI: 10.5061/dryad.tt0d1/1
title: Carter_etal_data8_2014

description: This is the data for the manuscript “Behavioral plasticity and GxE of reproductive tactics in Nicrophorus vespilloides burying beetles” by MJ Carter, ML Head, AJ Moore & NJ Royle.Data was collected by MJC. All methods are described in the associated manuscript. Column headings are described in the excel spreadsheet.
DOI: 10.5061/dryad.v3c31/1
title: Daphnia galeata microsats data
DOI: 10.5061/dryad.vf83f/1
title: StrandhRåberg2015

description: For each sample (host_individual), there is information about species, infection intensity, and composition of infection (number of reads of each ospC strain).
DOI: 10.5061/dryad.12344/1
title: Tran et al Journal of Animal Ecology

description: Data for all aspects of Tran et al. 2015, 'Patterns of trophic niche divergence between invasive and native fishes in wild communities are predictable from mesocosm studies'
DOI: 10.5061/dryad.18ph4/1
title: Data_Kos et al_Journal of Ecology 2015.xlsx

description: In a greenhouse experiment, we grew Jacobaea vulgaris plants in soil conditioned by 10 plant species, in a multispecies mixture, or in unconditioned (mixed field) soil. For all soils, we measured fungal community composition For each plant, we recorded biomass, chemistry (amino acids and pyrrolizidine alkaloids (PA) in phloem exudates), performance of a specialist and a generalist aphidBiomass and chemistry were measured at 2 sampling times: 6 and 13 weeks after transplanting in the conditioned soils
DOI: 10.5061/dryad.20cp7/1
title: Interaction Matrices for the four different methods

description: The excel file contains four tables corresponding to the interaction matrices, as in figure 2 of the associated publication. They are extracted with the four different methods ('EX'= extinction; 'RY'=Relative Yield; 'EQ'= Lotka-Volterra equilibrium; 'LVD'=Lotka-Volterra dynamics). Species codes as in figure 2.
DOI: 10.5061/dryad.2vj67/1
title: Species occurrence and trait data, and JAGS model file

description: This zip archive contains two items. A text file containing the JAGS model used in the main text analysis and an .RData file containing a list with three objects. Users will need to install the free software package R at (http://cran.us.r-project.org/). The three items in the loaded object are [1] X - a site x year x replicate x species array containing species occurrence data, [2] day - a site x year x replicate array containing the Julian day for the corresponding samples in X, and [3] dprime - a vector containing species floral specialization values.
DOI: 10.5061/dryad.52j55/33
title: Spawns_number_Salamandrella_eng
DOI: 10.5061/dryad.52j55/35
title: Habitats_coordinates
DOI: 10.5061/dryad.6t7t6/1
title: Table S2

description: Trait database used in this analysis
DOI: 10.5061/dryad.6t7t6/2
title: Phylogenetic tree

description: Phylogeny of southern African trees and shrubs species
DOI: 10.5061/dryad.6t7t6/3
title: Table S1
DOI: 10.5061/dryad.7369p/5
title: RYT_plotdata_by_GHID_corrected_PUBLIC_ACCESS

description: contains the raw phenotype data for genotyped individuals for 2009-2012, dry and wet seasons, used in Spindel et al., 2015.
DOI: 10.5061/dryad.7577v/1
title: donnees_Dryad
DOI: 10.5061/dryad.7k824/1
title: data_file_1

description: photographic measures of wing lightness for females at Castroville in 2012 & 2013 (date=Julien date)
DOI: 10.5061/dryad.7k824/2
title: data_file_2

description: photographic measures of wing lightness for females at La Palma in 2011 & 2012 (date=Julien date)
DOI: 10.5061/dryad.7k824/3
title: data_file_3

description: spectral measures of the lightness (tot.int) of female wings in the early (pa1) and late (pa2) season
DOI: 10.5061/dryad.7k824/4
title: data_file_4

description: photographic measures of the proportion of male wings with black pigment used for analyses presented in Fig 1.
DOI: 10.5061/dryad.8112f/7
title: Supporting Information - Text S3

description: Implied alignment of the optimal tree inferred with POY (tree-alignment) and the TE142 dataset. This file is the same as the one available at Wiley Online Library and published together with the manuscript (Supporting Information Text S3). It is reproduced here as a backup for the original.
DOI: 10.5061/dryad.86750/1
title: All Tribolium Genotypes

description: This file includes all the genotypes scored as part of this study in GenPop format. Sample names include either Fam (indicating that they are the first offspring from each family in the inbreeding assey) or Ind (indicating that these are additional individuals from the selection lines also included in the sample name).
DOI: 10.5061/dryad.86750/2
title: Per locus heterozygosity

description: The estimated heterozygosities for each locus for each population produced by GenPop.
DOI: 10.5061/dryad.885c0/1
title: R Data file containing all data

description: .RData file containing four variables: (1) description, (2) gbi, (3) birds, (4) group.info. 'description' provides a brief overview of the data. 'gbi' is the group by individual matrix that maps detections of individuals (each column is an individual) to groups (each row is a group, a 1 represents an individual occurring in that group). 'group.info' contains all the metadata for groups detected using the Gaussian Mixture Model (start and end times, location, sampling period). 'birds' contains all the metadata for the individuals (age, sex, immigration status, pca score). Each row in 'birds' matches each column in 'gbi', and each row in 'group.info' matches each row in 'gbi'. To access this file, users will need to download the freeware R package from (http://www.r-project.org).
DOI: 10.5061/dryad.8jq98/6
title: Platyrrhini

description: Phylogenetic tree in nexus format suitable for Mesquite describing evolutionary relationship for 32 platyrrhines. The topology and branch lenghts are based on on Springer et al 2012, PLoS One, 7:e49521.
DOI: 10.5061/dryad.8jq98/7
title: Strepsirrhini

description: Phylogenetic tree in nexus format suitable for Mesquite describing evolutionary relationship for 28 strepsirrhines. The topology and branch lenghts are based on on Springer et al 2012, PLoS One, 7:e49521.
DOI: 10.5061/dryad.8n4p8/1
title: Bee occurrence and trait data

description: Spreadsheet containing trait and occurrence data for bee species. Column names are as follows: GenusSpecies = taxonomic ID, Year = sampling year, Day = Day of the year, ypr = Years post restoration (equal to -1 for non-restored state), Presence = presence/absence of species, NestLoc = nesting location, Excavate = nesting habit, Sociality = sociality, Lecty = lecty, MeanITD = Ln(inter-tegular span distance), d = level of resource specialization, abun = species abundance.
DOI: 10.5061/dryad.8n4p8/2
title: Syrphid fly occurrence and trait data

description: Spreadsheet containing trait and occurrence data for syrphid fly species. Column names are as follows: GenusSpecies = taxonomic ID, Year = sampling year, Day = Day of the year, ypr = Years post restoration (equal to -1 for non-restored state), Presence = presence/absence of species, LarvalDiet = larval diet type, AdultDiet = adult diet type, BodyLength = Ln(dorsal body length) measured from front of head to tip of abdomen, WingLength = Ln(length of wing), HeadWidth = Ln(width of head), d = level of resource specialization, abun = species abundance
DOI: 10.5061/dryad.c56rk/1
title: Otolith Sr isotope values for Chinook salmon spawning in the Stanislaus River

description: The data file contains 87Sr/86Sr values measured in the otoliths of adult Chinook salmon sampled in the Stanislaus River, California, between 2001 and 2006. Fish age was estimated using scale annuli, and individuals that outmigrated in 2000 and 2003 were retained for the current analysis (see "Outmigration year"). Each otolith contains multiple 87Sr/86Sr values, representing spot analyses sampled along a standardized 90° transect from the otolith core towards the otolith edge. The average isotopic value of the natal region (post-exogenous feeding check) was used to assign river or hatchery of origin, and for individuals that originated in and returned to the Stanislaus River, the distance to the last natal spot (see "Distance from core") was used to estimate size at outmigration. The data file also includes the instrument error ("2SE"), strontium signal ("Sr (V)") and laser operating conditions associated with each spot analysis. See accompanying "README" file for additional information on each fish, including natal assignments.
DOI: 10.5061/dryad.ck276/1
title: Microsatellite_data_Genetix_format

description: Microsatellite data in genetix format used in the paper: Eurasian house mouse (Mus musculus L.) differentiation at microsatellite loci identifies the Iranian plateau as a phylogeographic hotspot
DOI: 10.5061/dryad.dd60v/1
title: simulation_datasets

description: This dataset contains simulation data in the following paper: Jicai Jiang et al., Joint prediction of multiple quantitative traits using a Bayesian multivariate antedependence model. Heredity (2015) Accpeted.
DOI: 10.5061/dryad.gs352/1
title: Noug microsatellite data

description: This file contains microsatellite scores (allele fragment lengths) for 16 loci and 639 individuals, representing 33 populations of noug (Guizotia abyssinica) and it's wild relative (Guizotia scabra ssp. schimperii).
DOI: 10.5061/dryad.gs352/2
title: Noug phenotypic data

description: This file contains phenotypic data collected on the level of individuals (sheet: Noug_Individual_Data), accessions (sheet: Noug_Pooled_Data) and environmental data of the collecting sites (sheet: Environmental_Data).
DOI: 10.5061/dryad.j2bb9/1
title: 16S_rRNA_MRE

description: Nexus file of 16S rRNA gene sequences from MRE.
DOI: 10.5061/dryad.j2bb9/2
title: MBLFP_MRE

description: Nexus file of MBLFP gene sequences from MRE.
DOI: 10.5061/dryad.k1d8c/1
title: cusack_fmri

description: For each of five neonates, there is an fMRI timeseries (raw data) and a manually drawn grey matter mask. The adult data from this paper are already available from the fc1000 dataset.
DOI: 10.5061/dryad.n43qf/1
title: JAE_DataArchive_SwainBenoîtHammill

description: This file provides tow-by-tow catch rates of selected fishes, an index of local risk of predation by grey seals and selected environmental information from an anuual bottom-trawl survey of the southern Gulf of St. Lawrence conducted each September since 1971. Please see the accompanying ReadMe file for further details.
DOI: 10.5061/dryad.p0kj9/1
title: Kost_et_al_Dryad_1

description: This data set has two tabs that will enable the analyses of percent spring emergence and probability that a planted seed flowered in the first year.
DOI: 10.5061/dryad.p0kj9/2
title: Kost_et_al_Dryad_2

description: This data set has two tabs that will enable the analyses of: 1) emergence date 2) census 1-3 height; 3) census 1-3 length of longest leaf; 4) survival to anthesis; and 5) the Pearson correlations presented in Table S1.
DOI: 10.5061/dryad.p0kj9/3
title: Kost_et_al_Dryad_3

description: This data set has two tabs that will enable the analyses of overall, cross type specific and density specific phenotypic selection analyses.
DOI: 10.5061/dryad.qk835/1
title: Time series elemental and physiological data for experimental plaice serially sampled for 7-12 months

description: Plaice were serially sampled for 7-12 months under ambient but monitored conditions. Each fish was sampled approximately monthly. Measurements in the attached data file include physiological variables (e.g. plasma protein concentrations, age, weight, length, female gonadosomatic index), otolith growth rates and opacity, and blood plasma and otolith elemental concentrations. Environmental data (salinity, temperature and seawater elemental concentrations) are also displayed. Note that elemental concentrations and element/calcium ratios are denoted as X.El and X.El.Ca for concentrations of element (‘El’) in medium ‘X’, where ‘X’ is either seawater (SW), blood plasma (B) or otolith (O).
DOI: 10.5061/dryad.rr4bj/1
title: Warneken&Rosati_Experiment1

description: Subject data from behavioral experiment with chimpanzees in Warneken & Rosati, "Cognitive capacities for cooking in chimpanzees." Experiment 1: Preference for cooked food.
DOI: 10.5061/dryad.rr4bj/2
title: Warneken&Rosati_Experiment2

description: Subject data from behavioral experiment with chimpanzees in Warneken & Rosati, "Cognitive capacities for cooking in chimpanzees." Experiment 2: Patience when waiting for cooked food.
DOI: 10.5061/dryad.rr4bj/3
title: Warneken&Rosati_Experiment3

description: Subject data from behavioral experiment with chimpanzees in Warneken & Rosati, "Cognitive capacities for cooking in chimpanzees." Experiment 3: Preference for cooking device.
DOI: 10.5061/dryad.rr4bj/4
title: Warneken&Rosati_Experiment4

description: Subject data from behavioral experiment with chimpanzees in Warneken & Rosati, "Cognitive capacities for cooking in chimpanzees." Experiment 4: Will chimpanzees cook their own food?
DOI: 10.5061/dryad.rr4bj/5
title: Warneken&Rosati_Experiment5a

description: Subject data from behavioral experiment with chimpanzees in Warneken & Rosati, "Cognitive capacities for cooking in chimpanzees." Experiment 5a: Replication-Preference for cooked food.
DOI: 10.5061/dryad.rr4bj/6
title: Warneken&Rosati_Experiment5b

description: Subject data from behavioral experiment with chimpanzees in Warneken & Rosati, "Cognitive capacities for cooking in chimpanzees." Experiment 5b: Replication-Preference for cooking device.
DOI: 10.5061/dryad.rr4bj/7
title: Warneken&Rosati_Experiment5c

description: Subject data from behavioral experiment with chimpanzees in Warneken & Rosati, "Cognitive capacities for cooking in chimpanzees." Experiment 5c: Replication-Will chimpanzees cook their own food?
DOI: 10.5061/dryad.rr4bj/8
title: Warneken&Rosati_Experiment6a

description: Subject data from behavioral experiment with chimpanzees in Warneken & Rosati, "Cognitive capacities for cooking in chimpanzees." Experiment 6a: Do chimpanzees prefer cooked carrots?
DOI: 10.5061/dryad.rr4bj/9
title: Warneken&Rosati_Experiment6b

description: Subject data from behavioral experiment with chimpanzees in Warneken & Rosati, "Cognitive capacities for cooking in chimpanzees." Experiment 6b: Do cooking skills generalize to other foods?
DOI: 10.5061/dryad.v6sm8/1
title: Bourque matrix Revision2

description: character/taxon matrix used in phylogenetic analysis
DOI: 10.5061/dryad.v6sm8/2
title: Bourque Appendix 1 Revision2

description: description of characters used in phylogenetic analysis
DOI: 10.5061/dryad.v6sm8/3
title: Bourque Appendix 2 Revision2

description: character/taxon matrix used in phylogenetic analysis (in Excel format)
DOI: 10.5061/dryad.v7f7r/1
title: Caullerya_ITSalignment.GonzalezTortuero_etal_2014

description: DNA alignment of 3,700 Caullerya's ITS1 sequences in FASTA format
DOI: 10.5281/zenodo.14784
title: Laminarization of Highly Turbulent Air Flow

description: Measurements showing how the velocity profile of a highly turbulent air flow is laminarized by the soft hairy walls lining the pipe walls.The documented detailed but manual measurements were done in 1979, A Prandl pipe was used to determine the dynamic air pressure in sections along the pipe.
description: {'references' : [
                    
                        "Nilsson R., Nordell B., (1979). Experiments in reducing turbulence in pipe flow. (Försök med turbulensminskning). MSc. Thesis 1979:040E, Div. Water Res. Eng., Luleå University of Technology, Sweden. (In Swedish) http://pure.ltu.se/portal/files/91305512/1979_040E.pdf",
                    
                    ]}