cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/bk3g62nfcv
title: This supplementary material is created to support the data described in the manuscript: Covid-19 in Cartagena and the Bolívar Department, Colombia. Current status, perspectives and challenges until the arrival of the vaccine

description: Supplementary material: Covid-19 in Cartagena and the Bolívar Department, Colombia. Current status, perspectives and challenges until the arrival of the vaccine
DOI: 10.17632/hk5r6hhmt2
title: Gendering Gender Data

description: Visualising Official Statistics: Gendering Gender Data? Dataset of pictrues
DOI: 10.17632/j744nssd5j
title: 自由液面和折角对一种竖轴水轮机转动影响的数值研究

description: 先编译hw_sixDoFRigidBodyMotion_friction_torque_free1六自由度求解器，再分别运行4个算例。
DOI: 10.17632/k6ykcjjh7z
title: Vaccine Files

description: Design of epitope-based vaccines from tRNA peptides. The Vaccine Data Used And Download Paths to Intermediate Results are available. We initially obtained all available sequences of tRNA nucleotides from GtRNAdb from various species. It was then translated from the EMBOSSTranseq tool into equivalent peptide sequences tREP’s. These tREPs were subsequently screened for complete structural peptide selection via VaxiJen v2.0 to predict antigenic peptides. Depending on T-cell epitope prediction, these antigenic peptides are further screened based on major histocompatibility complex (MHC) class I binding, proteasomal C terminal cleavage, and TAP transport efficiency using NetCTL1.2 Server. The promising epitopes were then selected, based on cell penetration (CellPPD), toxicity (ToxinPred), antigenicity (VaxiJen v2.0), allergenicity (AllerTop v.2.0), conservancy (ECA IEDB Suite), and higher immunogenicity (C1I IEDB Suite) filtration. These epitopes should then be identified by (MHC) I alleles which are present in the endoplasmic reticulum, so that it can bind to them, and can be brought to the surface of the cell, where a T-cell or a B-cell can identify to produce an antibody. In order to bind these epitopes with alleles, the 3D structures of epitopes were generated and the corresponding allele was retrieved from RCSB to perform docking. The stability and conformational changes of these two bindings along with their dynamic interactions are then analyzed, through molecular dynamics.
DOI: 10.17632/kzhjg2k7ss
title: Carbon dioxide mole fraction data with different porosities pertaining to the coupling of endothermic and exothermic reactions in chemical reactors

description: The carbon dioxide mole fraction data with different porosities are obtained for the coupling of endothermic and exothermic reactions in chemical reactors. The porosity is isotropic. The porosity does not vary with space and therefore the porous media are homogeneous. Exothermic and endothermic reactions take place simultaneously whereby the heat required for the latter is supplied by the former. Heat transfer occurs via conduction through the walls of the reactor. For the endothermic reaction, the structure is especially effective because both the internal surfaces of the walls are coated with structured catalysts, which is capable of providing more efficient heat exchange and minimizing the problem of loss of catalytic activity. Such a reactor system is typically adiabatic in nature, meaning no heat is added in addition to the exothermic reaction heat release. The reactor system is in the form of a catalytic coating on a substrate composed of ceramic or metal walls defining straight reforming or oxidation channels which are parallel to each other and to the axis of the reactor. Relatively high mass transfer is provided by using low hydraulic diameter channels. The design increases the number of boundary layers between a fluid and a reactor wall by a factor of one hundred or more, and boundary layers are known to impede heat transfer. To facilitate computational modeling of transport phenomena and chemical kinetics in the flowing system of complex chemical reactions involving gas-phase and surface species, steady-state analyses are performed and computational fluid dynamics is used. ANSYS FLUENT is applied to the problem involving surface chemistry. Two types of species are defined: gas-phase and surface. The first type is a species in the gas phase above the surface. A surface species is defined to be the chemical species at the gas-solid interface. A surface does not necessarily have to be flat, and each surface species occupies one surface site. A site is considered to be a position or location on the surface at which a species can reside. A site does not necessarily have a composition itself or have to be a particular atom, and the total number of sites per unit area is conserved. The contribution of homogeneous reactions involving gas-phase species is insignificant under the conditions of interest. The heat release and consumption due to a surface reaction must be included in the model. Endothermicity or exothermicity of surface reactions contribute to the energy balance at an interface. Heat fluxes in the solid phase are balanced by chemical heat release at the surface.
Contributor: Junjie Chen, E-mail address: koncjj@gmail.com, ORCID: 0000-0002-5022-6863, Department of Energy and Power Engineering, School of Mechanical and Power Engineering, Henan Polytechnic University, 2000 Century Avenue, Jiaozuo, Henan, 454000, P.R. China
DOI: 10.17632/mw3fw9w677
title: LINF_290018000

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/nw2t7dwdv3
title: Bullous pemphigoid: three main clusters defining three outcome profiles

description: Background: Bullous pemphigoid (BP) is the most common autoimmune blistering disorder. Its presentation is polymorphic.
Objective: To investigate different clinical and biological profiles of BP. 
Methods: We conducted a retrospective two-center study including all BP patients seen between January 1st, 2015 and February 28th, 2021. We performed hierarchical clustering on principal components.
Results: Three clusters were identified. Patients in cluster 1 (n=155) were older than those of clusters 2 (n=89) and 3 (n=35, p<0.0001), more frequently presented pauci-bullous BP n=63 (41%) vs. 14 (16%) and 2 (6%) respectively, p<0.0001 and had anti-BP230 antibodies in 87% of cases. More than 100 blisters were observed in 14 patients (40%) from cluster 3, vs 3 (2%) of cluster 1 and 0 (0%) from cluster 2 (p<0.0001). Frequency of mucosal involvement
was higher in cluster 3 n=32 (91%, including epiglottis in 40%) vs. 11 (7%) and 34 (38%), p<0.0001. In clusters 2 and 3, 70% and 74% of patients had antibodies targeting only BP180. Cluster 3 received more lines of systemic treatment and experienced more relapses.
Limitations: Retrospective study without immunoelectron microscopy.
Conclusion: We identified three different BP clusters, including one corresponding to severe BP180 + BP230 - BP with features common to mucous membrane pemphigoid.
DOI: 10.17632/pnchbrkxdz
title: History of diabetes is associated with reduced likelihoods of achieving PASI75 and PASI90 at 12-months among psoriasis patients treated with biologics: Supplemental Data

description: This data is supplement to:
History of diabetes is associated with reduced likelihoods of achieving PASI75 and PASI90 at 12-months among psoriasis patients treated with biologics: A prospective analysis in the CorEvitas Psoriasis Registry
This data describes the characteristics of biologic initiators within the CorEvitas Psoriasis Registry during the study period. The data is stratified by diabetes status in Table 1 and by initiated biologic class in Table 2.
DOI: 10.17632/st7ggs4s92
title: Interfering with the ERC1–LL5beta interaction disrupts plasma membrane–associated platforms and affects tumor cell motility

description: DOI: 10.1371/journal.pone.0287670
Cell migration requires a complex array of molecular events to promote protrusion at the front of motile cells. The scaffold protein LL5beta interacts with the scaffold ERC1, and recruits it at plasma membrane–associated platforms that form at the front of migrating tumor cells. LL5beta and ERC1 proteins support protrusion during migration as shown by the finding that depletion of either endogenous protein impairs tumor cell motility and invasion. In this study we have tested the hypothesis that interfering with the interaction between LL5beta and ERC1 may be used to interfere with the function of the endogenous proteins to inhibit tumor cell migration. For this, we identified ERC1(270-370) and LL5beta(381-510) as minimal fragments required for the direct interaction between the two proteins. The biochemical characterization demonstrated that the specific regions of the two proteins, including predicted intrinsically disordered regions, are implicated in a reversible, high affinity direct heterotypic interaction. NMR spectroscopy further confirmed the disordered nature of the two fragments and also support the occurrence of interaction between them. We tested if the LL5beta protein fragment interferes with the formation of the complex between the two full-length proteins. Coimmunoprecipitation experiments showed that LL5beta(381-510) hampers the formation of the complex in cells. Moreover, expression of either fragment is able to specifically delocalize endogenous ERC1 from the edge of migrating MDA-MB-231 tumor cells. Coimmunoprecipitation experiments show that the ERC1-binding fragment of LL5beta interacts with endogenous ERC1 and interferes with the binding of endogenous ERC1 to full length LL5beta. Expression of LL5beta(381-510) affects tumor cell motility with a reduction in the density of invadopodia and inhibits transwell invasion. These results provide a proof of principle that interfering with heterotypic intermolecular interactions between components of plasma membrane–associated platforms forming at the front of tumor cells may represent a new approach to inhibit cell invasion.
DOI: 10.17632/tkmxw33y5c
title: Data on the implementation of distance learning during the COVID-19 pandemic in Yogyakarta City, Indonesia

description: The data were obtained by distributing survey instruments to elementary school teachers in Yogyakarta City for one week, starting from March 1, 2021, to March 8, 2021. The instrument was developed using Google Form so that the link could be spread easily by researchers to teachers. The data results were then sorted at the clearance step using Microsoft Excel, and only data from elementary school teachers in the city of Yogyakarta were used.
DOI: 10.17632/wjcn83td42
title: Insights into episodic exhumation of the western Tibetan Plateau since the Late Cretaceous from low-temperature thermochronology

description: We provided low temperature thermochronometry, thermal history, and exhumation rate modeling for samples from the western Tibet Plateau. Three stages of accelerated exhumation and one regional slow exhumation since the Eocene were recognized in different geological units. The first stage was related to the regional thrust-induced crustal thickening and led to the formation of the proto-TP. The second stage of accelerated exhumation is caused by the activity of local thrust, and the last stage is related to the enhanced river incision during Miocene. Our results highlight that tectonic and drainage network reorganization play an important role in shaping the geomorphology of the western TP.
DOI: 10.17632/ycm5sfdg67
title: Packed and claimed for sustainability: A multi-experiment test of how consumers perceive packaging sustainability

description: We conducted three experimental studies to analyze the impact of packaging materials and sustainability claims on sustainability perceptions, product expectations (e.g., regarding healthiness, tastiness, price), willingness-to-consume and product choices. 

Study 1 is split up into two parts. Study 1a zooms in on the difference between glass and plastic, while Study 1b zooms in on the difference between carton and metal. The data are included in one dataset. The study had a 2 (packaging material: seemingly sustainable vs seemingly unsustainable) x 2 (sustainability claim: present vs absent) x 2 (packaging color: green vs red) x 4 (cue-product combination sets) between-subjects design. We conducted ANOVAs and chi square tests to analyze our results. 

Study 2 zooms in on the difference between glass and plastic. The experiment has a 2 (packaging material: glass vs plastic) x 2 (sustainability claim: present vs absent) x 4 (cue-product combination sets) mixed design. We conducted multilevel analyses to analyze our results. The dataset was restructured to conduct these multilevel analyses. We used the syntax to obtain the parameter estimates. The syntax is included along with the datasets. We also conducted chi square tests. 

Study 3 zooms in on the difference between carton and plastic. The experiment has a 2 (packaging material: carton vs plastic) x 2 (sustainability claim: present vs absent) x 4 (cue-product combination sets) mixed design. We conducted multilevel analyses to analyze our results. The dataset was restructured to conduct these multilevel analyses. We used the syntax to obtain the parameter estimates. The syntax is included along with the datasets. We also conducted chi square tests.
DOI: 10.17632/6ff34rzjg9
title: Sediment provenance of the Bohai Sea: Detrital mineral dataset

description: A detrital mineral dataset is presented for sediment-provenance study in the modern Bohai Sea, China.
DOI: 10.25934/00002973
title: The Safety of Divalproex Sodium Extended Release Tablets in Migraine Prophylaxis: An Open-Label Extension Study in Adolescents

description: The purpose of this study is to determine if long-term treatment, up to 1 year, with Depakote ER is safe in the reduction of occurrence of migraine headaches in adolescents.
DOI: 10.25934/00004557
title: The Safety and Effectiveness of Duloxetine Compared With Placebo and Its Long-Term Safety and Efficacy in the Treatment of Predominant Stress Urinary Incontinence

description: The purposes of this study are to determine whether duloxetine can help subjects with stress urinary incontinence and to see whether the effects of duloxetine can be maintained.
DOI: 10.5281/zenodo.14203015
title: Individual tree dataset from airborne laser scanning data

description: General description

Data about individual tree segments detected from the Finnish national 5 pt/m^2 airborne laser scanning data. The dataset contains 281304 individual trees from a test site of 3km x 3km located in Padasjoki, Finland. The ALS data has been collected in 2019.

Data description

The individual tree segment dataset has been published as a CSV file. The tree height, DBH, stem volume and above-ground biomass have been predicted using Random Forest Machine Learning models. The rest of the features have been calculated directly from the ALS point cloud. The CSV file contains the following columns:



LX and LY: tree location (location of max height in the canopy height model) in the ETRS-TM35FIN coordinate reference system (EPSG:3067)

Hmax: tree height (based on highest returns)

Gele: ground elevation at tree location (interpolated from ground points)

lowBranch: height of lowest branch (limited accuracy)

crownV: crown volume as 3D convex hull

species: predicted species: 1 = pine, 2 = spruce, 3 = deciduous tree

H: predicted tree height

DBH: predicted diameter at breast height

Volume: predicted stem volume

Biomass: predicted above-ground biomass (dry mass)


Citation

Any scientific publication using the data should cite the following paper:

Hyyppä, M., Turppa, T., Hyyti, H., Yu, X., Handolin, H., Kukko, A., Hyyppä, J., & Virtanen, J. -P. (2024). Concepts Towards Nation-Wide Individual Tree Data and Virtual Forests. ISPRS International Journal of Geo-Information, 13(12), 424. https://doi.org/10.3390/ijgi13120424
DOI: 10.5281/zenodo.14203016
title: Individual tree dataset from airborne laser scanning data

description: General description

Data about individual tree segments detected from the Finnish national 5 pt/m^2 airborne laser scanning data. The dataset contains 281304 individual trees from a test site of 3km x 3km located in Padasjoki, Finland. The ALS data has been collected in 2019.

Data description

The individual tree segment dataset has been published as a CSV file. The tree height, DBH, stem volume and above-ground biomass have been predicted using Random Forest Machine Learning models. The rest of the features have been calculated directly from the ALS point cloud. The CSV file contains the following columns:



LX and LY: tree location (location of max height in the canopy height model) in the ETRS-TM35FIN coordinate reference system (EPSG:3067)

Hmax: tree height (based on highest returns)

Gele: ground elevation at tree location (interpolated from ground points)

lowBranch: height of lowest branch (limited accuracy)

crownV: crown volume as 3D convex hull

species: predicted species: 1 = pine, 2 = spruce, 3 = deciduous tree

H: predicted tree height

DBH: predicted diameter at breast height

Volume: predicted stem volume

Biomass: predicted above-ground biomass (dry mass)


Citation

Any scientific publication using the data should cite the following paper:

Hyyppä, M., Turppa, T., Hyyti, H., Yu, X., Handolin, H., Kukko, A., Hyyppä, J., & Virtanen, J. -P. (2024). Concepts Towards Nation-Wide Individual Tree Data and Virtual Forests. ISPRS International Journal of Geo-Information, 13(12), 424. https://doi.org/10.3390/ijgi13120424
DOI: 10.25934/00004555
title: Efficacy and Safety of Duloxetine Compared With Placebo in Subjects Electing Surgery for Severe Pure Genuine Stress Incontinence

description: The purpose of this study is to monitor the long term safety and efficacy of duloxetine in the treatment of severe pure genuine stress incontinence.
DOI: 10.5281/zenodo.10259046
title: Plausible 2050 offshore wind locations in the North Sea

description: This dataset contains a set of points representing plausible locations for offshore wind turbines to have been built in the North Sea by the years 2030, 2035, 2040, 2045 and 2050, based off the national ambitions announced up to August 2022.
The data are given both as shapefile and CSV. Both contain the same points. Coordinates are lat/lon to WGS84 (EPSG 4326).
An additional shapefile gives the zones that contain these wind farms, with predicted years of construction.
For the turbine locations or the zones, where a year is missing this indicates the wind farm already exists in 2022. Existing wind turbine coordinates are sourced from the DeepOWT dataset by Hoeser et al [1]. Others use a newly-generated, speculative grid, using predicted turbine sizes and spacings for the year of construction. Wind farms that are planned between now and 2030 but not yet built use 2030 attributes for spacing purposes, but list Year and Capacity as "NULL" in the shapefile. Following visual inspection a small number of wind farms which were under construction at the time of the DeepOWT snapshot were set to ignore this dataset and generate a new grid, as otherwise the farm would be only partly populated.
A full description of how these coordinates were arrived at is currently under development as a journal article, and once it is available this readme will be updated to link to it. If you have arrived at this snapshot after early 2024, then check the "latest version" link in Zenodo to see if this has already happened.
See readme.pdf for a changelog.
If using this version, please cite the data set directly using the title and authors above and DOI 10.5281/zenodo.10259046
DOI: 10.5281/zenodo.14222865
title: Plausible 2050 offshore wind locations in the North Sea

description: This dataset contains a set of zones and points representing plausible locations for offshore wind farms and individual turbines to have been built in the North Sea by the years 2030, 2040, and 2050, based off the national ambitions announced up to summer 2024.

This version (version 3) is a major revision. Many wind farm zones and most turbines have moved. Column names have changed. See readme.pdf for further information and a changelog.

A full description of how these coordinates were arrived at is currently under development as a journal article, and once it is available this readme will be updated to link to it. Check the "latest version" link in Zenodo to see if this has already happened.

If using this version, please cite the dataset directly using the title and authors above and DOI 10.5281/zenodo.14222865

Please do not use "OSW zones.png" for serious work; use the underlying data instead. The image is included so as to give a useful preview in Zenodo.
DOI: 10.5281/zenodo.7109882
title: Plausible 2050 offshore wind locations in the North Sea

description: This dataset contains a set of zones and points representing plausible locations for offshore wind farms and individual turbines to have been built in the North Sea by the years 2030, 2040, and 2050, based off the national ambitions announced up to summer 2024.

This version (version 3) is a major revision. Many wind farm zones and most turbines have moved. Column names have changed. See readme.pdf for further information and a changelog.

A full description of how these coordinates were arrived at is currently under development as a journal article, and once it is available this readme will be updated to link to it. Check the "latest version" link in Zenodo to see if this has already happened.

If using this version, please cite the dataset directly using the title and authors above and DOI 10.5281/zenodo.14222865

Please do not use "OSW zones.png" for serious work; use the underlying data instead. The image is included so as to give a useful preview in Zenodo.
DOI: 10.5281/zenodo.7109883
title: Plausible 2050 offshore wind locations in the North Sea

description: This dataset contains a set of points representing plausible locations for offshore wind turbines to have been built in the North Sea by the years 2030, 2035, 2040, 2045 and 2050, based off the national ambitions announced up to August 2022. <br> Currently not included in this dataset are,<br> • Existing wind farms that have already been built<br> • Wind farms within currently designated areas for wind farm construction <br> We plan to include both of these categories in a later version. <br> The data are given both as shapefile and CSV. Both contain the same points.<br> Coordinates are UTM, zone 31N. <br> A full description of how these coordinates were arrived at is currently under development as a journal article, and once it is available this readme will be updated to link to it. If you have arrived at this snapshot after late 2022, then check the “latest version” link in Zenodo to see if this has already happened. <br> If using this version, please cite the data set directly using the title and authors above and DOI 10.5281/zenodo.7109883
DOI: 10.6084/m9.figshare.27901350
title: Whole Genome Assembly and Annotation of <i>Fusarium acuminatum</i> Isolate 1A

description: This dataset includes the Oxford Nanopore Technologies (ONT) long-read sequencing data for the high-quality whole genome assembly and annotation of <i>Fusarium acuminatum</i> isolate 1A. File Pass.fq is ONT long-read sequencing data.
DOI: 10.6084/m9.figshare.27901350.v1
title: Whole Genome Assembly and Annotation of <i>Fusarium acuminatum</i> Isolate 1A

description: This dataset includes the Oxford Nanopore Technologies (ONT) long-read sequencing data for the high-quality whole genome assembly and annotation of <i>Fusarium acuminatum</i> isolate 1A. File Pass.fq is ONT long-read sequencing data.
DOI: 10.15468/dl.nba6mb
title: Occurrence Download

description: A dataset containing 486 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei, Hong Kong)",
 "TaxonKey is Castanopsis kawakamii Hayata"
 ]
}

 The dataset includes 486 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002269-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.