cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13731310.v1
title: Supplementary Material for: The Effect of Peroral Endoscopic Myotomy in Achalasia Patients with Prior Endoscopic Intervention: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Peroral endoscopic myotomy (POEM) has been reported to be effective in achalasia patients with prior failed endoscopic intervention (PFI). We performed this meta-analysis to compare and summarize the clinical outcome of POEM in patients with or without prior endoscopic intervention. <b><i>Method:</i></b> We searched relevant studies published up to March 2020. Meta-analysis for technical success, clinical success, Eckardt score, lower esophageal sphincter (LES) pressure, clinical reflux, and adverse event were conducted based on a random-effects model. <b><i>Results:</i></b> Eight studies enrolling 1,797 patients who underwent POEM were enrolled, including 1,128 naïve achalasia patients and 669 patients with PFI. In the PFI group, the pooled estimated rate of technical success was 97.7% (95% confidence interval [CI], 95.8–98.8%), the pooled clinical success rate was 91.0% (95% CI, 88.0–93.4%), and the pooled adverse events rate was 23.5% (95% CI, 10.6–44.1%). The Eckardt score significantly decreased by 5.95 points (95% CI, 5.50–6.40, <i>p</i> &lt; 0.00001) and the LES pressure significantly reduced by 19.74 mm Hg (95% CI, 14.10–25.39, <i>p</i> &lt; 0.00001) in the PFI group. There were no difference in the technical success, clinical success, and adverse events rate between the treatment-naïve group and PFI group, with a risk ratio of 1.0 (95% CI, 0.99–1.01, <i>p</i> = 0.89), 1.02 (95% CI, 0.98–1.06, <i>p</i> = 0.36), and 0.88 (95% CI, 0.67–1.16, <i>p</i> = 0.38), respectively. <b><i>Conclusions:</i></b> POEM is an effective and safe treatment for achalasia patients with prior endoscopic intervention. Randomized clinical trials are needed to further verify the efficiency and safety of the POEM in those patients.
DOI: 10.25403/upresearchdata.13296440
title: Exploring the influence of contextual elements on women leaders paradox mindset

description: Supporting documentation for a qualitative research which explores the influence of contextual elements on women leaders paradox mindset. The dataset consists of the following files: Transcripts (x14), Signed informed consent forms (x14), an NDA signed by the transcriber, Demographic profile questionnaire (x14), and a List of codes exported from Atlas TI<br>
DOI: 10.25403/upresearchdata.13296440.v1
title: Exploring the influence of contextual elements on women leaders paradox mindset

description: Supporting documentation for a qualitative research which explores the influence of contextual elements on women leaders paradox mindset. The dataset consists of the following files: Transcripts (x14), Signed informed consent forms (x14), an NDA signed by the transcriber, Demographic profile questionnaire (x14), and a List of codes exported from Atlas TI<br>
DOI: 10.5281/zenodo.4518697
title: Vaccination hesitancy and conspiracy beliefs in the UK during the Covid-19 pandemic

description: <strong>Abstract</strong> <strong>Objective:</strong> Vaccination hesitancy and conspiracy beliefs are a threat to achieving population immunity in Covid-19. This study aimed to clarify the association between these and incentives to vaccination in the UK. <strong>Design:</strong> In a longitudinal study, we collected UK public data at three time points: 1) before and 2) after the development of a vaccine, and 3) after the vaccination programme was underway. <strong>Main Outcome Measures:</strong> Vaccination hesitancy; general and Covid-19 specific concerns about vaccination; belief in conspiracy theories. <strong>Results:</strong> Vaccination hesitancy decreased between Times 1 (54%) and 3 (13%). Most concerns and reported incentives related to safety, though at Time 2, incentives included endorsement by trusted public figures. We found only small effects of conspiracy belief, and only at Time 1. A minority of participants remained anti-vaccination and stated nothing would change their minds. <strong>Conclusion:</strong> Vaccination hesitancy seems to be falling the UK. However, anxiety about safety remains and could jeopardise the vaccination programme should any adverse effects be reported. Conspiracy beliefs seem to play only a minor role in hesitancy and may continue to decrease in importance with a successful vaccination programme. Understanding motivations behind vaccination hesitancy is vital if we are to achieve population immunity.
DOI: 10.5281/zenodo.4518696
title: Vaccination hesitancy and conspiracy beliefs in the UK during the Covid-19 pandemic

description: <strong>Abstract</strong> <strong>Objective:</strong> Vaccination hesitancy and conspiracy beliefs are a threat to achieving population immunity in Covid-19. This study aimed to clarify the association between these and incentives to vaccination in the UK. <strong>Design:</strong> In a longitudinal study, we collected UK public data at three time points: 1) before and 2) after the development of a vaccine, and 3) after the vaccination programme was underway. <strong>Main Outcome Measures:</strong> Vaccination hesitancy; general and Covid-19 specific concerns about vaccination; belief in conspiracy theories. <strong>Results:</strong> Vaccination hesitancy decreased between Times 1 (54%) and 3 (13%). Most concerns and reported incentives related to safety, though at Time 2, incentives included endorsement by trusted public figures. We found only small effects of conspiracy belief, and only at Time 1. A minority of participants remained anti-vaccination and stated nothing would change their minds. <strong>Conclusion:</strong> Vaccination hesitancy seems to be falling the UK. However, anxiety about safety remains and could jeopardise the vaccination programme should any adverse effects be reported. Conspiracy beliefs seem to play only a minor role in hesitancy and may continue to decrease in importance with a successful vaccination programme. Understanding motivations behind vaccination hesitancy is vital if we are to achieve population immunity.
DOI: 10.5519/qd.begygz3q
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (63 records)
DOI: 10.5519/qd.0jng1671
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (94 records)
DOI: 10.5281/zenodo.4017495
title: Open Dataset - Relation between palm and finger cortical representations in primary somatosensory cortex: a 7T fMRI study

description: Open data for <strong>Akselrod M, Martuzzi R, van der Zwaag W, Blanke O, Serino A (2021). Relation between palm and finger cortical representations in primary somatosensory cortex: a 7T fMRI study. <em>Human Brain Mapping</em>.</strong>
DOI: 10.5281/zenodo.4017494
title: Open Dataset - Relation between palm and finger cortical representations in primary somatosensory cortex: a 7T fMRI study

description: Open data for <strong>Akselrod M, Martuzzi R, van der Zwaag W, Blanke O, Serino A (2021). Relation between palm and finger cortical representations in primary somatosensory cortex: a 7T fMRI study. <em>Human Brain Mapping</em>.</strong>
DOI: 10.6084/m9.figshare.13394012
title: Metadata record for: Collegiate athlete brain data for white matter mapping and network neuroscience

description: This dataset contains key characteristics about the data described in the Data Descriptor Collegiate athlete brain data for white matter mapping and network neuroscience. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.13394012.v1
title: Metadata record for: Collegiate athlete brain data for white matter mapping and network neuroscience

description: This dataset contains key characteristics about the data described in the Data Descriptor Collegiate athlete brain data for white matter mapping and network neuroscience. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.5281/zenodo.4518716
title: Trialstreamer data

description: Trialstreamer annotated collection of RCTs. This respository contains baseline files (large), and subsequent updates (daily for PubMed, weekly for ICTRP).
DOI: 10.25345/c5nj66
title: MassIVE MSV000086816 - Mutant ASXL1 induces age-related expansion of phenotypic hematopoietic stem cells through activation of Akt/mTOR pathway
title: Somatic mutations of ASXL1 are frequently detected in age-related clonal hematopoiesis (CH). However, how ASXL1 mutations drive CH remains elusive. Using knockin (KI) mice expressing a C-terminally truncated form of ASXL1-mutant (ASXL1-MT), we examined the influence of ASXL1-MT on physiological aging in hematopoietic stem cells (HSCs). HSCs expressing ASXL1-MT display competitive disadvantage after transplantation. Nevertheless, in genetic mosaic mouse model, they acquire clonal advantage during aging, recapitulating CH in humans. Mechanistically, ASXL1-MT cooperates with BAP1 to deubiquitinate and activate AKT. Overactive Akt/mTOR signaling induced by ASXL1-MT results in aberrant proliferation and dysfunction of HSCs associated with age-related accumulation of DNA damage. Treatment with an mTOR inhibitor rapamycin ameliorates aberrant expansion of the HSC compartment as well as dysregulated hematopoiesis in aged ASXL1-MT KI mice. Our findings suggest that ASXL1-MT provokes dysfunction of HSCs, whereas it confers clonal advantage on HSCs over time, leading to the development of CH.
DOI: 10.15161/oar.it/73479
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.6084/m9.figshare.13288721
title: Metadata record for: LC-MS Based Metabolite Profiles of Thirteen Grassland Plant Species Reflecting Environmental Dynamics

description: This dataset contains key characteristics about the data described in the Data Descriptor LC-MS Based Metabolite Profiles of Thirteen Grassland Plant Species Reflecting Environmental Dynamics. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.13288721.v1
title: Metadata record for: LC-MS Based Metabolite Profiles of Thirteen Grassland Plant Species Reflecting Environmental Dynamics

description: This dataset contains key characteristics about the data described in the Data Descriptor LC-MS Based Metabolite Profiles of Thirteen Grassland Plant Species Reflecting Environmental Dynamics. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.13625942
title: Metadata record for: Transcriptome and translatome of CO2 fixing acetogens under heterotrophic and autotrophic conditions

description: This dataset contains key characteristics about the data described in the Data Descriptor Transcriptome and translatome of CO2 fixing acetogens under heterotrophic and autotrophic conditions. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.13625942.v1
title: Metadata record for: Transcriptome and translatome of CO2 fixing acetogens under heterotrophic and autotrophic conditions

description: This dataset contains key characteristics about the data described in the Data Descriptor Transcriptome and translatome of CO2 fixing acetogens under heterotrophic and autotrophic conditions. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.5281/zenodo.3941896
title: Molecular profiles (somatic mutations, gene expression and DNA methylation) of multiple pattern-annotated lung adenocarcinoma tumor regions.

description: Please refer to the methods section of the paper for more detailed explanations. In summary: <strong>chuv_molecular_dataset_annotation.xlsx</strong>: table containing clinical information for each patient, molecular profiles available for each sample, histologic pattern annotation and driver mutations detected. <strong>CHUV_MAF.txt</strong>: MAF file containing mutations found in each sample. Mutations were called using GATK4 pipeline and Mutect2. Filtered .vcf files were converted into maf files using vcf2maf. Annotations to patient, region and samples are reported in additional columns. <strong>CHUV_DNAmethylation_BetaValues_ComBat.txt</strong>: DNA methylation beta values generated with minfi and batch-corrected with ComBat. <strong>CHUV_GeneExpression_RsemExpectedCounts.txt</strong>: Gene-level expression counts computed with RSEM. <strong>CHUV_GeneExpression_log2TPM_ComBat.txt</strong>: Gene-level expression normalized as log2(TPM+1) computed with RSEM and batch-corrected with ComBat.
DOI: 10.5281/zenodo.3941895
title: Molecular profiles (somatic mutations, gene expression and DNA methylation) of multiple pattern-annotated lung adenocarcinoma tumor regions.

description: Please refer to the methods section of the paper for more detailed explanations. In summary: <strong>chuv_molecular_dataset_annotation.xlsx</strong>: table containing clinical information for each patient, molecular profiles available for each sample, histologic pattern annotation and driver mutations detected. <strong>CHUV_MAF.txt</strong>: MAF file containing mutations found in each sample. Mutations were called using GATK4 pipeline and Mutect2. Filtered .vcf files were converted into maf files using vcf2maf. Annotations to patient, region and samples are reported in additional columns. <strong>CHUV_DNAmethylation_BetaValues_ComBat.txt</strong>: DNA methylation beta values generated with minfi and batch-corrected with ComBat. <strong>CHUV_GeneExpression_RsemExpectedCounts.txt</strong>: Gene-level expression counts computed with RSEM. <strong>CHUV_GeneExpression_log2TPM_ComBat.txt</strong>: Gene-level expression normalized as log2(TPM+1) computed with RSEM and batch-corrected with ComBat.
DOI: 10.5281/zenodo.4443496
title: H&E, TTF1, immunofluorescence staining and Digital Spatial Profiling of histologically heterogeneous lung adenocarcinoma FFPE sections.

description: Please refer to the methods section of the paper for more detailed explanations. In summary: <strong>chuv_imaging_dataset_annotation.xlsx</strong>: table containing imaging assays available for each sample and histologic patterns present. <strong>he_images.zip</strong>: high-resolution images of FFPE sections stained with H&E and acquired at 20x magnification. <strong>ttf1_images.zip</strong>: high-resolution images of FFPE sections stained with TTF1 and acquired at 20x magnification. <strong>if_images.zip</strong>: high-resolution images of FFPE sections assayed with multicolor immunofluorescence (markers: CD20, CD4, CD8, CD68, Ki67) and acquired at 20x magnification. <strong>DSP_data_and_annotations.xlsx</strong>: tables containing Digital Spatial Profiling (DSP) data (in SNR) and annotations for batch1 and batch2. <strong>all_snapshots.zip</strong>: low-resolution snapshots of all images uploaded in this repository (H&E, TTF1, immunofluorescence - with all 5 colors together and with each color separately), with histologic pattern boundaries drawn on the images; immunofluorescence snapshots of DSP ROIs (batch1) and their position on each slide. Color code for histologic pattern boundaries: grey = normal, blue = lepidic, sea green = papillary, orange = acinar, red = solid.<br> Color code for immunofluorescence channels: cyan = CD20, blue = CD4, yellow = CD8, red = CD68, green = Ki67.<br> Color code for DSP snapshots: sea green = CD3, red = CD45, yellow = CD20, blue = DAPI
DOI: 10.5281/zenodo.4518733
title: MEDDOPROF corpus: sample set

description: The <strong>MEDDOPROF corpus</strong> is a collection of 2000 clinical cases from over 20 different specialties annotated with professions, employment statuses and other work-related activities. It is used for the MEDDOPROF Shared Task on occupations and employment status detection and normalization in Spanish medical documents, which will be celebrated as part of IberLEF 2021. The sample set is composed of <strong>15 clinical cases</strong> extracted from the training set from four different specialties: radiology, oncology, psychiatry and occupational health. The files are distributed as follows: - For the <strong>subtask 1 (MEDDOPROF-NER)</strong>, annotations are distributed in Brat standoff format with PROFESION/SITUACION_LABORAL tags only. - For the<strong> subtask 2 (MEDDOPROF-CLASS)</strong>, annotations are distributed in Brat standoff format with PACIENTE/FAMILIAR/SANITARIO/OTROS tags only. - For the <strong>subtask 3 (MEDDOPROF-NORM)</strong>, annotations are distributed in a tab-separated file (TSV) with a code column that includes the mapping of entities to ESCO and SNOMED-CT. For further information, please visit https://temu.bsc.es/meddoprof/ or email us at encargo-pln-life@bsc.es
DOI: 10.5281/zenodo.4518732
title: MEDDOPROF corpus: sample set

description: The <strong>MEDDOPROF corpus</strong> is a collection of 2000 clinical cases from over 20 different specialties annotated with professions, employment statuses and other work-related activities. It is used for the MEDDOPROF Shared Task on occupations and employment status detection and normalization in Spanish medical documents, which will be celebrated as part of IberLEF 2021. The sample set is composed of <strong>15 clinical cases</strong> extracted from the training set from four different specialties: radiology, oncology, psychiatry and occupational health. The files are distributed as follows: - For the <strong>subtask 1 (MEDDOPROF-NER)</strong>, annotations are distributed in Brat standoff format with PROFESION/SITUACION_LABORAL tags only. - For the<strong> subtask 2 (MEDDOPROF-CLASS)</strong>, annotations are distributed in Brat standoff format with PACIENTE/FAMILIAR/SANITARIO/OTROS tags only. - For the <strong>subtask 3 (MEDDOPROF-NORM)</strong>, annotations are distributed in a tab-separated file (TSV) with a code column that includes the mapping of entities to ESCO and SNOMED-CT. For further information, please visit https://temu.bsc.es/meddoprof/ or email us at encargo-pln-life@bsc.es
DOI: 10.17632/p4wxpp7fp4.2
title: MI Sanchez Aniorte Publications

description: Laser processing from Photovoltaics, semiconductor, microelectronics devices to driven proton acceleration. In this repository, there are some experimental studies demonstrating the effectiveness of the laser in a wide variety of applications
DOI: 10.17632/knrkh9cnr4.2
title: Microprobe, XRF data, Raman, and pseudosection files - Monti Romani Complex (Northern Apennines, Italy)

description: Microprobe data (mineral spot analyses) obtained on samples of schists from the Monti Romani Complex (Northern Apennines, Italy). Includes: core files, .txt files, settings, exported images, XRF analyses (excel table) and phase equilibria modeling files (PERPLE_X files, settings), used to build phase equilibrium diagrams on both samples. Raman files (spectra) Structural data collected on the complex. Electron Microprobe - CAMECA SX100 - Stuttgart University, Germany XRF - Panalytical PW2400 - Stuttgart University, Germany Raman - Horiba Jobin Yvon LABRAM HR800 (Roma 3 University, Italy)
DOI: 10.17632/ws9pwxkbb2.3
title: Case Studies for Optimal Placement and Control of Valves and Chlorine Boosters in Water Networks

description: EPANET models and corresponding information needed to formulate the problem of optimal placement and control of valves and chlorine boosters in water networks for case studies used in - "Relax-Tighten-Round Algorithm for Optimal Placement and Control of Valves and Chlorine Boosters in Water Networks" by Filippo Pecci, Ivan Stoianov and Avi Ostfeld (2020) - "Convex Heuristic for Optimal Placement and Control of Valves and Chlorine Boosters in Water Networks" by Filippo Pecci, Ivan Stoianov and Avi Ostfeld (2020) Acknowledgments: Filippo Pecci and Ivan Stoianov are supported by EPSRC (EP/P004229/1, Dynamically Adaptive and Resilient Water Supply Networks for a Sustainable Future). Avi Ostfeld is supported by the Israel Science Foundation (grant No. 555/18).
DOI: 10.17632/kk3g255n92.2
title: Supplementary data - Energy-based PM2.5 in China: Factor decomposition, emission reduction potential, and rebound effect

description: Supplementary data of Energy-based PM2.5 in China: Factor decomposition, emission reduction potential, and rebound effect
DOI: 10.17632/gg6xvv9p6p.1
title: Transfer efficiency of carbon, nutrients, and PUFAs in planktonic food webs under different environmental conditions

description: Data for an article 'Transfer efficiency of carbon, nutrients, and PUFAs in planktonic food webs under different environmental conditions' by Maciej Karpowicz, Irina Feniova, Michail Gladshev, JolantaEjsmont-Karabin, Andrzej Górniak, Nadezhda N. Sushchik, Olesya V. Anishchenko, Andrew Dzialowski
DOI: 10.17632/wxtvws9jjr.1
title: An empirical evaluation of attenuated total reflectance fourier transform infrared spectroscopy (ATR-FTIR) for the determination of total aflatoxins in maize, rice, wheat, peanut and poultry feed. Bahauddeen et al

description: Below is the raw data used for the validation process of determination of total aflatoxins in cereals, peanuts and poultry feeds by ATR-FTIR integrated with partial least squares (PLS) regression. ATR-FTIR spectra of dilutions (o to 90 ng/ml) of mix aflatoxin standards at equal ratio were prepared in 75% methanol and 100% acetonitrile was collected. The various absorbance with respective wavenumber was recorded. Data were analysed using MINITAB 18 statistical software, and the PLS model was developed and validated using the data. Files below showed the raw data and the analyses.
DOI: 10.17632/htmm8h7dsg.1
title: raw data

description: The purpose of this study was to develop a new evaluation method for stimulus-driven attention without using special equipment and to clarify the relationship between the score and clinical findings. The evaluation method for stimulus-driven attention developed in this study exceeds the cutoff by the conventional evaluation method, and it is possible to detect neglect symptoms that could not be evaluated sufficiently and potential USN cases. These data were demographic data, the percentage of correct answers, and results of other assessment. These data were collected from stroke patients who presented with unilateral spatial neglect in the acute phase. These data will be used to compare the results of the conventional assessment and new evaluation methods and to interpret the characteristics of the assessment methods in the context of the pathology of unilateral spatial neglect.
DOI: 10.17632/vtchx4rmy4.2
title: Dataset

description: Dataset of research