cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10695572
title: DtpB 4_docked part 2/3

description: This upload is one of the three uploads that contain 200 docked models generated by Rosetta FlexPepDock pipeline for each di- and tripeptide composed of natural amino acids docked into DtpB. For detailed information on docking and data analysis please see:

Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition

https://dx.doi.org/10.1016/j.celrep.2023.112831

https://zenodo.org/records/7586704 Once you have downloaded all files from the three uploads, run the following commands (make sure that you have enough storage space):

$ cat 4_docked_? > 4_docked.tar.gz$ tar -xzf 4_docked.tar.gz ./

To clean up intermediate files, run:rm 4_docked.tar.gz 4_docked_?

Links to all three parts:DtpB 4_docked part 1/3DtpB 4_docked part 2/3DtpB 4_docked part 3/3
DOI: 10.6084/m9.figshare.25295638.v1
title: HPL LUAD 20x

description: Pre-trained weights on Barlow Twins LUAD at 20X magnification with 60% background limit
DOI: 10.6084/m9.figshare.25295638
title: HPL LUAD 20x

description: Pre-trained weights on Barlow Twins LUAD at 20X magnification with 60% background limit
DOI: 10.5281/zenodo.10695670
title: DtpB 4_docked part 3/3

description: This upload is one of the three uploads that contain 200 docked models generated by Rosetta FlexPepDock pipeline for each di- and tripeptide composed of natural amino acids docked into DtpB. For detailed information on docking and data analysis please see:

Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition

https://dx.doi.org/10.1016/j.celrep.2023.112831

https://zenodo.org/records/7586704 Once you have downloaded all files from the three uploads, run the following commands (make sure that you have enough storage space):

$ cat 4_docked_? > 4_docked.tar.gz$ tar -xzf 4_docked.tar.gz ./

To clean up intermediate files, run:rm 4_docked.tar.gz 4_docked_?

Links to all three parts:DtpB 4_docked part 1/3DtpB 4_docked part 2/3DtpB 4_docked part 3/3
DOI: 10.5281/zenodo.10695671
title: DtpB 4_docked part 3/3

description: This upload is one of the three uploads that contain 200 docked models generated by Rosetta FlexPepDock pipeline for each di- and tripeptide composed of natural amino acids docked into DtpB. For detailed information on docking and data analysis please see:

Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition

https://dx.doi.org/10.1016/j.celrep.2023.112831

https://zenodo.org/records/7586704 Once you have downloaded all files from the three uploads, run the following commands (make sure that you have enough storage space):

$ cat 4_docked_? > 4_docked.tar.gz$ tar -xzf 4_docked.tar.gz ./

To clean up intermediate files, run:rm 4_docked.tar.gz 4_docked_?

Links to all three parts:DtpB 4_docked part 1/3DtpB 4_docked part 2/3DtpB 4_docked part 3/3
DOI: 10.5281/zenodo.10715258
title: 20240215_THA57_Fractions
DOI: 10.5281/zenodo.10715259
title: 20240215_THA57_Fractions
DOI: 10.5281/zenodo.10715397
title: 20240221_THA57_basic
DOI: 10.5281/zenodo.10715398
title: 20240221_THA57_basic
DOI: 10.5281/zenodo.10715416
title: Neurorestorative effects of cerebellar transcranial direct current stimulation on social prediction of adolescents and young adults with congenital cerebellar malformations
DOI: 10.5281/zenodo.10715417
title: Neurorestorative effects of cerebellar transcranial direct current stimulation on social prediction of adolescents and young adults with congenital cerebellar malformations
DOI: 10.5281/zenodo.10715439
title: Docking of 8400 peptides into an experimental structure of bacterial peptide transporter DtpB

description: Di- and tripeptides composed of proteinogenic amino acids were docked into an experimental structure of DtpB using Rosetta FlexPepDock protocol. Additional experimental structures of DtpB were used to train a classifier to select top docking poses. Average Rosetta energy terms for top 10 hits were then combined with experimental affinity measurements to train a binary classifier that predicts binders to DtpB.


This upload includes input and output data as well as code to run and analyse the full pipeline. Some intermediate results are available upon request.


For more details, please see:
Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition


https://dx.doi.org/10.1016/j.celrep.2023.112831
DOI: 10.5281/zenodo.7586703
title: Docking of 8400 peptides into an experimental structure of bacterial peptide transporter DtpB

description: Di- and tripeptides composed of proteinogenic amino acids were docked into an experimental structure of DtpB using Rosetta FlexPepDock protocol. Additional experimental structures of DtpB were used to train a classifier to select top docking poses. Average Rosetta energy terms for top 10 hits were then combined with experimental affinity measurements to train a binary classifier that predicts binders to DtpB.


This upload includes input and output data as well as code to run and analyse the full pipeline. Some intermediate results are available upon request.


For more details, please see:
Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition


https://dx.doi.org/10.1016/j.celrep.2023.112831
DOI: 10.5281/zenodo.7586704
title: Docking of 8400 peptides into an experimental structure of bacterial peptide transporter DtpB

description: Di- and tripeptides composed of proteinogenic amino acids were docked into an experimental structure of DtpB using Rosetta FlexPepDock protocol. Additional experimental structures of DtpB were used to train a classifier to select top docking poses. Average Rosetta energy terms for top 10 hits were then combined with experimental affinity measurements to train a binary classifier that predicts binders to DtpB. This upload includes input and output data as well as code to run and analyse the full pipeline. Some intermediate results are available upon request. For more details, please see:<br> <strong>Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition</strong> https://dx.doi.org/10.1016/j.celrep.2023.112831
DOI: 10.6084/m9.figshare.25295554.v1
title: Untitled ItemBNT images Lebanese version

description: The images of the Boston Naming Test- Lebanese version
DOI: 10.6084/m9.figshare.25295554
title: Untitled ItemBNT images Lebanese version

description: The images of the Boston Naming Test- Lebanese version
DOI: 10.5281/zenodo.10715168
title: Model data for "AERA-MIP: Emission pathways, remaining budgets and carbon cycle dynamics compatible with 1.5 ºC and 2 ºC global warming stabilization"

description: Model output timeseries for AERA-MIP used in Silvy et al. submitted to Earth System Dynamics
DOI: 10.5281/zenodo.10715169
title: Model data for "AERA-MIP: Emission pathways, remaining budgets and carbon cycle dynamics compatible with 1.5 ºC and 2 ºC global warming stabilization"

description: Model output timeseries for AERA-MIP used in Silvy et al. submitted to Earth System Dynamics
DOI: 10.6084/m9.figshare.25295671.v1
title: Supplementary Tables S1 to S6.xlsx

description: Major and trace elements of MORB samples from East Pacific Rise and Southwest Indian Ridge
DOI: 10.6084/m9.figshare.25295671
title: Supplementary Tables S1 to S6.xlsx

description: Major and trace elements of MORB samples from East Pacific Rise and Southwest Indian Ridge
DOI: 10.6084/m9.figshare.13023858
title: Additional file 3 of Identification and validation of methylation-driven genes prognostic signature for recurrence of laryngeal squamous cell carcinoma by integrated bioinformatics analysis

description: Additional file 3: Material S3. Clinical information data 109 LSCC specimens from GSE25727 microarray.
DOI: 10.6084/m9.figshare.13023858.v1
title: Additional file 3 of Identification and validation of methylation-driven genes prognostic signature for recurrence of laryngeal squamous cell carcinoma by integrated bioinformatics analysis

description: Additional file 3: Material S3. Clinical information data 109 LSCC specimens from GSE25727 microarray.
DOI: 10.25625/kkaqkd/rmsd7m
title: From Knowledge to Dialogue_ Crafting Interactive Narratives with LiveDocs.pdf

description: :unav
DOI: 10.25625/kkaqkd
title: Slides for the workshop "From Knowledge to Dialogue: Crafting Interactive Narratives with LiveDocs"

description: Slides for the workshop "From Knowledge to Dialogue: Crafting Interactive Narratives with LiveDocs" offered in February 27th, 2024.
DOI: 10.15151/esrf-dc-1543611960
title: A shape-dependent model for Ultra-Small Angle X-ray Scattering data of triglycerides - ESRF Dataset

description: This dataset contains the raw WAXS, SAXS and USAXS results used to substantiate the outcomes of the publication "A shape-dependent model for Ultra-Small Angle X-ray Scattering data of triglycerides". 

For information and correct frame numbers, please contact the author: ivana.penagos@ugent.be
DOI: 10.6084/m9.figshare.16447251
title: Subglacial hydrology within the Amery Ice Shelf catchment

description: These datasets correspond to the results from the manuscript:<i>Characterizing subglacial hydrology within the Amery Ice Shelf catchment using numerical modelling and satellite altimetry (Wearing et al.,)</i>Martin G. Wearing<sup>1</sup><sup>,</sup><sup>2</sup>, Christine F. Dow<sup>3</sup>, Daniel N. Goldberg<sup>2</sup>, Noel Gourmelen<sup>2</sup>, Anna E. Hogg<sup>4</sup>, Livia Jakob<sup>5</sup><br><sup>1</sup>ESA Centre for Earth Observation, ESRIN, Frascati, Rome, Italy<br><sup>2</sup>School of Geosciences, University of Edinburgh, Edinburgh, UK<br><sup>3</sup>Department of Geography and Environmental Management, University of Waterloo, Ontario, Canada<br><sup>4</sup>School of Earth and Environment, University of Leeds, Leeds, UK<br><sup>5</sup>Earthwave Ltd, Edinburgh, UK<br><br>The datasets are:1) Subglacial melt rates. These are calculated using:- basal dissipation from numerical ice sheet inversion with the ice-flow model STREAMICE (https://mitgcm.readthedocs.io/en/latest/phys_pkgs/streamice.html) run at 2km and 5km resolution.- geothermal heat flux estimates from Shen et al., (2020) and Martos et al., (2017)- englacial temperature from Van Liefferinge & Pattyn (2013)Variables include in each file are:Position coordinates (X (m) & Y (m)) in polar stereographic projection WGS 1984Geothermal heat flux (GHF (W/m^2))Basal friction dissipation (Basal_disp (W/m^2))Vertical conduction (Vert_Cond (W/m^2))Subglacial melt rate (Melt_rate (m/yr))<br><br>2) Subglacial hydrology. This is determined using the GlaDS model (Werder et al., 2013) with high and low channel conductivity and subglacial melt rate calculated using Shen GHF and 2km resolution basal dissipation.Model results are provided in netcdf format for high and low conductivity:Amery_subglacial_hydrology_GlaDS_high_conductivity.ncAmery_subglacial_hydrology_GlaDS_low_conductivity.ncVariables includes in each file are:Node X coordinate (m)Node Y coordinate (m)Edge X coordinate (m)Edge Y coordinate (m)Channelized discharge (m3/s)Effective pressure (Pa)Subglacial water pressure (Pa)Sheet discharge (x-direction) (m3/s)Sheet discharge (y-direction) (m3/s)sheet thickness (m)Channel cross-sectional area (m2)<br><br>3) Ice-shelf basal melting is calculated from CryoSat-2 interferometric-swath radar altimetry acquired from 2010 to 2020, using the mass conservation approach (Gourmelen et al., 2017). Melt rates and errors are provided in the file: Amery_ice_shelf_basal_melt_rate.nc<br><br>4) The outlines of active subglacial lakes detected from CryoSat-2 interferometric-swath radar altimetry acquired from 2010 to 2020, using the method of Malczyk et al. (2020) are provided as geojson files in the zipfile: Amery_subglacial_lakes.zip
DOI: 10.6084/m9.figshare.25288441
title: Untitled Item Data for the article"<b>Effect of outcrop rock-soil structure on flow behavior in karst rocky desertification hillslope</b>"

description: <pre>This data was collected on a rocky desertification hillslope in order to investigate the impact of different outcrops rock soil structural units (ORSSU) on flow paths and to identify the main flow paths. The data includes surface runoff, seepage depth, changes in stained area, and visualization of infiltration paths.</pre>
DOI: 10.5281/zenodo.7948722
title: Key data and code for "Urbanization exacerbates intensification of short-duration rainfall extremes in a warming climate"

description: This repository folder contains data and Matlab function scripts that are used as the basis for the paper "Urbanization exacerbates intensification of short-duration rainfall extremes in a warming climate" The data include - 30-year hourly 0.1° rainfall data over the Greater Bay Area (GBA), China, obtained by multi-source merging and correction techniques - land-use maps of the area in 1980 and 2018 - boundary polygons of the GBA in WGS1984 The codes include - scripts to calculate the annual maximum rain rate of the gridded rainfall data for different durations - fundamental scripts for nonstationary frequency analysis of annual maximum rain rate, examples performed for the gridded data of the GBA - scripts to differentiate the grids as urbanized/rural ones based on the land-use data for the purpose of results comparison after the frequency analysis - the function to perform Man-Kendall trend analysis for the calculated nonstationary return levels Please cite this resource and the paper if you find our data/codes helpful.
DOI: 10.5281/zenodo.10715173
title: Key data and code for "Urbanization further intensifies short-duration rainfall extremes in a warmer climate"

description: This repository folder contains data and Matlab function scripts that are used as the basis for the paper "Urbanization exacerbates intensification of short-duration rainfall extremes in a warming climate" 

 

The data include



30-year hourly 0.1° rainfall data over the Greater Bay Area (GBA), China, obtained by multi-source merging and correction techniques

Calculated annual maximum rain rate at each grid of various time scales based on the merged product

Land-use maps of the area in 1980 and 2018

Boundary polygons of the GBA in WGS1984

Classified grids with marked urban and rural land cover types


The codes include



Fundamental scripts for nonstationary frequency analysis, examples performed for the gridded data of the GBA

The function to perform Man-Kendall trend analysis for the calculated nonstationary return levels


Please cite this resource and the paper if you find our data/codes helpful.
DOI: 10.5281/zenodo.7948721
title: Key data and code for "Urbanization further intensifies short-duration rainfall extremes in a warmer climate"

description: This repository folder contains data and Matlab function scripts that are used as the basis for the paper "Urbanization exacerbates intensification of short-duration rainfall extremes in a warming climate" 

 

The data include



30-year hourly 0.1° rainfall data over the Greater Bay Area (GBA), China, obtained by multi-source merging and correction techniques

Calculated annual maximum rain rate at each grid of various time scales based on the merged product

Land-use maps of the area in 1980 and 2018

Boundary polygons of the GBA in WGS1984

Classified grids with marked urban and rural land cover types


The codes include



Fundamental scripts for nonstationary frequency analysis, examples performed for the gridded data of the GBA

The function to perform Man-Kendall trend analysis for the calculated nonstationary return levels


Please cite this resource and the paper if you find our data/codes helpful.
DOI: 10.6084/m9.figshare.25288441.v1
title: Untitled Item Data for the article"<b>Effect of outcrop rock-soil structure on flow behavior in karst rocky desertification hillslope</b>"

description: <pre>This data was collected on a rocky desertification hillslope in order to investigate the impact of different outcrops rock soil structural units (ORSSU) on flow paths and to identify the main flow paths. The data includes surface runoff, seepage depth, changes in stained area, and visualization of infiltration paths.</pre>
DOI: 10.57967/hf/1820
title: caBreu
DOI: 10.15468/86ce6j
title: Données inscrites dans la campagne POCOROCH de 2021 - Baie de Morlaix

description: Les données proviennent de la campagne d'échantillonnage réalisée à partir de comptage visuel en plongée durant un temps limité.
DOI: 10.15468/quy26d
title: Données d'observation de la Faune, de la Flore et de la Fonge-[MILIEU] - Zone humide d'altitude - Inventaire

description: Programme d'inventaire sur les zones humides d'altitude
DOI: 10.15468/myttth
title: Mise aux normes des rejets d'eaux pluviales de l'Aéroport Biarritz Pays Basque-Aero BAB chiro PE

description: données chiropteres point d'écoute
DOI: 10.15468/vfvyb6
title: Projet de voie nouvelle Paul Ramadier - Données d'inventaires de terrain voie nouvelle Paul Ramadier

description: Inventaires faune flore généralistes observés de 2019 à 2021 par le bureau d'étude SOLER IDE missionné par Bordeaux Métropole dans le cadre de son projet de voie nouvelle Paul Ramadier sur la commune de Villenave d'Ornon en Gironde (33). La collecte s’est focalisée sur la recherche des individus ou de traces au sein de milieux de l'aire d'étude immédiate en avril, mai et juin. Des transects ont été réalisés afin de balayer l'ensemble du site.
DOI: 10.15468/epuwus
title: Centrale solaire de Quinipily

description: Centrale solaire de Quinipily situé dans la commune de Baud, dans le département du Morbihan (56) en région Bretagne. Puissance de 4,7 MW. La centrale est situé sur des terrains anciennement de fourrés, prairies et cultures.
DOI: 10.15468/38m7su
title: Parc éolien de Chigné - Eolien Chigné suivi site compensation INSECT

description: Eolien Chigné suivi site compensation INSECT
DOI: 10.15468/anw8k5
title: ONF - Données issues d'études conventionnelles commandées par organismes exterieurs à l'ONF - MOA : Deux-Sèvres Nature Environnement-ONF - DFF Import Etudes LNEF_182_ENS Puit d'Enfer - MOA : Deux-Sèvres Nature Environnement

description: Données DFF issues de la bdd du Labo. Nation. d'Entomologie Forestière (LNEF) pour Deux-Sèvres Nature Environnement - Données transmises à l'ONF dans le cadre d'études commandées par MOA exterieures à l'ONF
DOI: 10.15468/66pth7
title: Mise aux normes des rejets d'eaux pluviales de l'Aéroport Biarritz Pays Basque-Aero BAB Chiro Opp

description: données chiropteres opportunistes
DOI: 10.15468/qsewug
title: ONF - Données issues d'études conventionnelles commandées par organismes exterieurs à l'ONF - MOA : Poitou-Charente Nature Environnement-ONF - DFF Import Etudes LNEF_160_LGV Bussac Foret - MOA : Poitou-Charente Nature Environnement

description: Données DFF issues de la bdd du Labo. Nation. d'Entomologie Forestière (LNEF) pour Poitou-Charente Nature Environnement - Données transmises à l'ONF dans le cadre d'études commandées par MOA exterieures à l'ONF
DOI: 10.15468/5z93d3
title: Projet pilote d'ombrière agrivoltaïque de Souleuvre-en-Bocage - Mammifères - Inventaire non protocolé

description: Liste des espèces de mammifères observées dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude du projet pilote agrivoltaïque impliquant la mise en œuvre d’ombrières agrivoltaïques sur la commune de Souveuvre-en-Bocage (14)
DOI: 10.15468/cze9bb
title: Mise aux normes des rejets d'eaux pluviales de l'Aéroport Biarritz Pays Basque-Aero BAB Reptiles Opp

description: données reptiles opportunistes
DOI: 10.15468/uwnuhf
title: Projet photovoltaïque au sol de la Carillonnière - ANTRAN-Inventaire des amphibiens

description: Inventaire sur un cycle biologique complet pour les amphibiens
DOI: 10.15468/gcv7fw
title: ONF - MIGBIO Observations et inventaires MOA ONF-ONF - DFF Import Etudes ONF - MIG BIO - VELLE_Laurent

description: Données DFF ONF - MIG BIO - VELLE_Laurent
DOI: 10.15468/9f2stm
title: PNA Odonates en Pays de la Loire-Étude du Gomphe de Graslin (Gomphus graslinii) sur la rivière Loir – Année 2021

description: Le CPIE Vallées de la Sarthe et du Loir a mené des études sur les odonates sur le site Natura 2000 Vallée du Loir de Vaas à Bazouges dans le cadre de l’élaboration du document d’objectifs. Ces études ont permis de mettre en évidence plusieurs localisations de populations d’Odonates protégées. Suite à ces premiers travaux, plusieurs études ont suivi dans l’objectif d’améliorer les connaissances scientifiques au sein du site Natura 2000 sur ces espèces, mais également sur d’autres rivières de la Sarthe. Ces travaux s’inscrivent également dans la dynamique du Plan National d’Actions sur les Odonates (PNAO) et plus particulièrement dans sa déclinaison régionale pour les Pays de la Loire pour permettre l’amélioration des connaissances des Anisoptères de rivières et cours d’eaux (GRETIA, 2012).
DOI: 10.15468/djnp7m
title: ZAC Multisite "Centre Ouest - La Vigne", Commune de Saint-Gilles (35)-ZAC Saint-Gilles-35_faune_2021

description: Données faune terrain ZAC Saint-Gilles-35 2021
DOI: 10.15468/e39u27
title: Dossier d'autorisation Loi sur l'Eau Le Tourne-Données Faune-Flore CNPN Le Tourne

description: Données issues d'inventaires réalisés dans le cadre d'un projet d'aménagement d'un bassin d'infiltration sur la commune du Tourne (33).
DOI: 10.15468/ts6ez4
title: N2000 FR5200646 Alpes Mancelles : suivi du site-Études odonates d'intérêt communautaire sur les sites N2000 Alpes mancelles et Foret Sillé

description: Études : GRETIA - recherche des populations de deux odonates d'intérêt communautaire, sites N2000 Alpes mancelles et Foret Sillé (PdL) - 2021.Ce jeu de données regroupe les données d'observations de terrain liées aux recherches ciblées de Coenagrion mercuriale et Oxygastra curtisii, au sein et aux abords immédiats des périmètres de deux ZPS : FR5200650 - Forêt de Sillé & FR5200646 - Alpes Mancelles. Il comprend donc toutes les données d'odonates produites dans le cadre de ces prospections mais également celles relatives aux autres invertébrés rencontrés fortuitement sur le terrain.
DOI: 10.15468/gphazt
title: Merle Sud

description: Centrale solaire de Merle Sud / Sénéguier située sur la commune de Saint Magne dans le département de la Gironde en région Nouvelle Aquitaine d'une puissance de 24 MW
DOI: 10.15468/xbt634
title: Projet de création du parc photovoltaïque au sol d'Eguzon-Chantôme-Inventaire de l'entomofaune

description: Inventaire de l'entomofaune sur un cycle biologique complet
DOI: 10.15468/2mj2cs
title: PNA Chiroptères en Pays de la Loire-Recherche de colonies de reproduction de chiroptères en Vallée de la Loire et Sarthe

description: Visite de bâtiments et ponts favorables à la présence de colonies de chiroptères. Une large part des données représente des absences de chauves-souris
DOI: 10.15468/9auz6f
title: Mise aux normes des rejets d'eaux pluviales de l'Aéroport Biarritz Pays Basque-Aero BAB Amphi Opp

description: données amphibiens ooportunistes
DOI: 10.15468/d25w8r
title: Projet de création du parc photovoltaïque au sol d'Eguzon-Chantôme-Inventaire des reptiles

description: Inventaire des reptiles sur un cycle biologique complet
DOI: 10.15468/susz2z
title: Projet d'aménagement du secteur Sud du Tram'bus 2 sur les communes de Bayonne et d'Anglet-Trambus Insectes

description: données d'observations d'espèces d'insectes protégées
DOI: 10.15468/zjz983
title: Projet pilote d'ombrière agrivoltaïque de Souleuvre-en-Bocage - invertébrés opportunistes

description: Liste des espèces invertébrés hors insectes observées dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude du projet pilote agrivoltaïque impliquant la mise en œuvre d’ombrières agrivoltaïques sur la commune de Souveuvre-en-Bocage (14)
DOI: 10.15468/qrnse9
title: Parc éolien des Egrouttes 2 EUSP - Eolien EUSP Suivi busards 2021

description: Eolien EUSP Suivi busards 2021