cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13306697
title: De-trended WR48 BRITE 2016 DATASET

description: De-correlated light-curve of the HD 113904 system as observed by the BRITE-Toronto satellite between 23/02/2016 and 22/07/2016.
DOI: 10.6084/m9.figshare.13306697.v1
title: De-trended WR48 BRITE 2016 DATASET

description: De-correlated light-curve of the HD 113904 system as observed by the BRITE-Toronto satellite between 23/02/2016 and 22/07/2016.
DOI: 10.7267/c821gr99w
title: Long-term effects of forest harvesting on summer low flow deficiets in the Coast Range of Oregon

description: We examined long-term changes in daily streamflow associated with forestry practices with two datasets (this one and the original Alsea Streamflow dataset(1972)) over a 60-year period (1959–2017) in the Alsea Watershed Study, Oregon Coast Range, Pacific Northwest, USA. In this contemporary period, 2006 to 2017 (12 water years), data were collected at 10-minute intervals, including three to eight years of pre-harvest data rating curves were developed. Based 40 to 55 stage-discharge data points collected for each watershed. Each watershed has datasets describing the paired stage heights at both pre and post-harvest periods, the corrected stages based on reference and electronic readings, and flows calculated based upon the rating curve and stage heights. All measurements are in feet (ft), meters (m), cubic feet per second (cfs), or cubic meters per second (cms).
DOI: 10.25919/hgft-gk58
title: Parkes observations for project P1062 semester 2020APRS_07

description: We propose to monitor the potential repeating FRBs in the Southern Sky with luminosity di- chotomy criterion. With a success of luminosity-guided detection of a repeating source by FAST, we can continue to search for more repeaters hidden in current FRB sample according to luminosity dichotomy. Specifically, we select FRB 171020 and FRB 180923 as the targets of proposed obser- vations, which are located in the repeater population in the luminosity function. We demonstrate that the observing with 20 hours for each source is optimistic using Parkes ultra-wide-bandwidth receiver (UWL), if there are repeaters among them.
DOI: 10.6073/pasta/a6255b201264d927dec69074267042ba
title: Keswick Reservoir Temperature Profile Data (2017-2019)

description: This dataset contains the Keswick Reservoir temperature profile data collected by using remote logging thermistors (temperature loggers) attached to a cable system at the log boom above Keswick Dam in three monitoring seasons in 2017, 2018 and 2019. Field data monitoring installation was performed by U.S. Bureau of Reclamation (Reclamation), with support from Watercourse Engineering, Inc. (Watercourse) as part of the Shasta Lake and Keswick Reservoir Flow and Temperature Modeling study conducted by Watercourse in cooperation with Reclamation. All data were collected using HOBO Water Temperature Pro v2 Data Loggers and reported to 0.01oF.
DOI: 10.5281/zenodo.4383213
title: Insect Conservation Actions Ontology

description: Insect conservation experts constructed an ontology of insect conservation actions based on a long list of possible actions pulled from a review of reviews and web scraping similar conservation projects. The full methods are detailed at: https://insectconservation.github.io/methods.html
DOI: 10.5281/zenodo.4383212
title: Insect Conservation Actions Ontology

description: Insect conservation experts constructed an ontology of insect conservation actions based on a long list of possible actions pulled from a review of reviews and web scraping similar conservation projects. The full methods are detailed at: https://insectconservation.github.io/methods.html
DOI: 10.15468/uk8wvs
title: Pythons in the Eocene of Europe reveal a much older divergence of the group in sympatry with boas

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zaher, Hussam, Smith, Krister T. (2020): Pythons in the Eocene of Europe reveal a much older divergence of the group in sympatry with boas. Biology Letters 16 (12): 1-6, DOI: 10.1098/rsbl.2020.0735, URL: http://dx.doi.org/10.1098/rsbl.2020.0735
DOI: 10.5281/zenodo.4383224
title: easyMF: A Web Platform for Matrix Factorization-based Biological Discovery from Large-scale Transcriptome Data

description: With the development of high-throughput experimental technologies, large-scale RNA sequencing (RNA-Seq) data have been and continue to be produced, but have led to challenges in extracting relevant biological knowledge hidden in the produced high-dimensional gene expression matrices. Here, we present easyMF, a user-friendly web platform that aims to facilitate biological discovery from large-scale transcriptome data through matrix factorization (MF). The easyMF platform enables users with little bioinformatics experience to streamline transcriptome analysis from raw reads to gene expression and to decompose expression matrix from thousands of genes to a handful of metagenes. easyMF also offers a series of functional modules for metagene-based exploratory analysis with an emphasis on functional gene discovery. As a modular, containerized and open-source platform, easyMF can be customized to satisfy users’ specific demands and deployed as a web server for broad applications. easyMF is freely available at https://github.com/cma2015/easyMF. We demonstrated the application of easyMF with four case studies using 940 RNA sequencing datasets from maize (<em>Zea mays </em>L<em>.</em>).
DOI: 10.5281/zenodo.4383238
title: easyMF: A Web Platform for Matrix Factorization-based Biological Discovery from Large-scale Transcriptome Data

description: With the development of high-throughput experimental technologies, large-scale RNA sequencing (RNA-Seq) data have been and continue to be produced, but have led to challenges in extracting relevant biological knowledge hidden in the produced high-dimensional gene expression matrices. Here, we present easyMF, a user-friendly web platform that aims to facilitate biological discovery from large-scale transcriptome data through matrix factorization (MF). The easyMF platform enables users with little bioinformatics experience to streamline transcriptome analysis from raw reads to gene expression and to decompose expression matrix from thousands of genes to a handful of metagenes. easyMF also offers a series of functional modules for metagene-based exploratory analysis with an emphasis on functional gene discovery. As a modular, containerized and open-source platform, easyMF can be customized to satisfy users’ specific demands and deployed as a web server for broad applications. easyMF is freely available at https://github.com/cma2015/easyMF. We demonstrated the application of easyMF with four case studies using 940 RNA sequencing datasets from maize (<em>Zea mays </em>L<em>.</em>).
DOI: 10.5281/zenodo.4383223
title: easyMF: A Web Platform for Matrix Factorization-based Biological Discovery from Large-scale Transcriptome Data

description: With the development of high-throughput experimental technologies, large-scale RNA sequencing (RNA-Seq) data have been and continue to be produced, but have led to challenges in extracting relevant biological knowledge hidden in the produced high-dimensional gene expression matrices. Here, we present easyMF, a user-friendly web platform that aims to facilitate biological discovery from large-scale transcriptome data through matrix factorization (MF). The easyMF platform enables users with little bioinformatics experience to streamline transcriptome analysis from raw reads to gene expression and to decompose expression matrix from thousands of genes to a handful of metagenes. easyMF also offers a series of functional modules for metagene-based exploratory analysis with an emphasis on functional gene discovery. As a modular, containerized and open-source platform, easyMF can be customized to satisfy users’ specific demands and deployed as a web server for broad applications. easyMF is freely available at https://github.com/cma2015/easyMF. We demonstrated the application of easyMF with four case studies using 940 RNA sequencing datasets from maize (<em>Zea mays </em>L<em>.</em>).
DOI: 10.6073/pasta/0c882e7ef146dc73fe8a64fed9a08ffb
title: Keswick Reservoir Temperature Profile Data (2017-2019)

description: This dataset contains the Keswick Reservoir temperature profile data collected by using remote logging thermistors (temperature loggers) attached to a cable system at the log boom above Keswick Dam in three monitoring seasons in 2017, 2018 and 2019. Field data monitoring installation was performed by U.S. Bureau of Reclamation (Reclamation), with support from Watercourse Engineering, Inc. (Watercourse) as part of the Shasta Lake and Keswick Reservoir Flow and Temperature Modeling study conducted by Watercourse in cooperation with Reclamation. All data were collected using HOBO Water Temperature Pro v2 Data Loggers and reported to 0.01oF.
DOI: 10.6084/m9.figshare.3761562.v1721
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25345/c5s79g
title: MassIVE MSV000086627 - Lanoline molecular networking Corsica V1 pos
title: Identification of metabolites in lanoline extract (Sheep, France, Corsica)
DOI: 10.6084/m9.figshare.13473594
title: Supplementary information

description: Supplementary information
DOI: 10.17632/yzm3hb5kr9.1
title: Data for: Identification of timing of scallop deformity and mortality from shell oxygen isotope records

description: The dataset shows the oxygen isotopic values of scallop shells.
DOI: 10.5517/ccdc.csd.cc25m386
title: CCDC 2014357: Experimental Crystal Structure Determination

description: Related Article: Chunlei Qu, Xianwen Long, Yueqian Sang, Min Zhang, Xiaoli Zhao, Xiao-Song Xue, Jun Deng|2020|Org.Lett.|22|9421|doi:10.1021/acs.orglett.0c02865
DOI: 10.6084/m9.figshare.13473690.v1
title: Sex Trafficking Data - Movement Data

description: Sex worker Movement circuit data
DOI: 10.6084/m9.figshare.13473690
title: Sex Trafficking Data - Movement Data

description: Sex worker Movement circuit data
DOI: 10.21227/47jk-0509
title: Measurement and Simulation of Human Sitting and Standing Movement Biomechanics

description: Previous studies of robotic exoskeletons and prostheses with regenerative actuators have focused exclusively on level-ground walking applications. Here we analyzed the lower-limb joint mechanical power during stand-to-sit movements using inverse dynamic simulations to estimate the biomechanical energy available for electrical regeneration. Nine subjects performed 20 sitting and standing movements while lower-limb kinematics and ground reaction forces were measured. Subject-specific body segment parameters were estimated using system parameter identification. Joint mechanical powers were calculated from net joint torques and rotational velocities and numerically integrated over time to estimate the joint biomechanical energies. The hip produced the largest peak negative mechanical power (1.8 ± 0.5 W/kg), followed by the knee (0.8 ± 0.3 W/kg) and ankle (0.2 ± 0.1 W/kg). Negative mechanical work from the hip, knee, and ankle joints per stand-to-sit movement were 0.35 ± 0.06 J/kg, 0.15 ± 0.08 J/kg, and 0.02 ± 0.01 J/kg, respectively. Assuming known regenerative actuator efficiencies (i.e., maximum 63%), robotic exoskeletons and prostheses could theoretically regenerate ~26 Joules of electrical energy while sitting down, compared to ~19 Joules per walking stride. Given that these regeneration performance calculations were based on healthy young adults, future studies should involve seniors and/or rehabilitation patients to better estimate the biomechanical energy available for electrical regeneration among individuals with mobility impairments.Reference:Laschowski B, Razavian RS, and McPhee J. (2020). Simulation of Stand-to-Sit Biomechanics for Design of Lower-Limb Exoskeletons and Prostheses with Energy Regeneration. bioRxiv. DOI: 10.1101/801258.
DOI: 10.15468/4sxw3b
title: Lectotypification of five names in the genus Stellaria (Caryophyllaceae) in China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wang, Wenqiao, Su, Zhiwei, Ma, Zhonghui (2020): Lectotypification of five names in the genus Stellaria (Caryophyllaceae) in China. PhytoKeys 170: 71-81, DOI: http://dx.doi.org/10.3897/phytokeys.170.59527, URL: http://dx.doi.org/10.3897/phytokeys.170.59527
DOI: 10.15468/g34cd8
title: A new species of Egglestonichthys (Teleostei, Gobiiformes, Gobiidae) from Okinawa Island, Japan

description: This dataset contains the digitized treatments in Plazi based on the original journal article Fujiwara, Kyoji, Suzuki, Toshiyuki, Motomura, Hiroyuki (2020): A new species of Egglestonichthys (Teleostei, Gobiiformes, Gobiidae) from Okinawa Island, Japan. ZooKeys 1006: 91-98, DOI: http://dx.doi.org/10.3897/zookeys.1006.58874, URL: http://dx.doi.org/10.3897/zookeys.1006.58874
DOI: 10.15468/z35569
title: An annotated checklist of Coccinellidae (Insecta, Coleoptera) with eight new records from the Kingdom of Saudi Arabia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ansi, Amin Al, Alkhalaf, Areej A., Fadl, Hassan, Rasool, Iftekhar, Dhafer, Hathal Al (2020): An annotated checklist of Coccinellidae (Insecta, Coleoptera) with eight new records from the Kingdom of Saudi Arabia. ZooKeys 1006: 35-89, DOI: http://dx.doi.org/10.3897/zookeys.1006.59123, URL: http://dx.doi.org/10.3897/zookeys.1006.59123
DOI: 10.15468/hmphkw
title: Red Sea Opisthobranchia 6: Phyllidiidae and their paradorid mimic: new species and new records (Heterobranchia, Nudibranchia, Doridina)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yonow, Nathalie (2020): Red Sea Opisthobranchia 6: Phyllidiidae and their paradorid mimic: new species and new records (Heterobranchia, Nudibranchia, Doridina). ZooKeys 1006: 1-34, DOI: http://dx.doi.org/10.3897/zookeys.1006.59732, URL: http://dx.doi.org/10.3897/zookeys.1006.59732
DOI: 10.5281/zenodo.4383292
title: Previously failing iView images

description: Out of sync iview images
DOI: 10.6084/m9.figshare.13473699
title: Sex Trafficking Data - Profile Ad Summary Description Similarity Matrix

description: This data is a cosine text similarity matrix of profile ad summary description. Cells measure the cosine similarity of profile ad summary description between sex worker pairs.
DOI: 10.6084/m9.figshare.13473699.v1
title: Sex Trafficking Data - Profile Ad Summary Description Similarity Matrix

description: This data is a cosine text similarity matrix of profile ad summary description. Cells measure the cosine similarity of profile ad summary description between sex worker pairs.
DOI: 10.3886/e129401v1
title: Content Counts and Motivation Matters: Reading Comprehension in Third-Grade Students Who Are English Learners

description: This study examined the role of science domain knowledge, reading motivation, and decoding skills in reading comprehension achievement in third-grade students who are English learners (ELs) and students who are monolingual, using a nationally representative data set. Multigroup probit regression analyses showed that third-grade science domain knowledge and motivation for reading, decoding skills, and early attainment of decoding skills were significantly associated with third-grade reading comprehension in both language groups. Also, using Wald chi-square tests, the study showed that the association between third-grade science domain knowledge and reading comprehension was stronger in students who were ELs than in students who were monolingual. These findings suggest that cultivating science domain knowledge is very important to supporting reading comprehension development in third grade, particularly for students who are ELs.
DOI: 10.3886/e129401
title: AERA Open Vol6 No1: Content Counts and Motivation Matters: Reading Comprehension in Third-Grade Students Who Are English Learners

description: This study examined the role of science domain knowledge, reading motivation, and decoding skills in reading comprehension achievement in third-grade students who are English learners (ELs) and students who are monolingual, using a nationally representative data set. Multigroup probit regression analyses showed that third-grade science domain knowledge and motivation for reading, decoding skills, and early attainment of decoding skills were significantly associated with third-grade reading comprehension in both language groups. Also, using Wald chi-square tests, the study showed that the association between third-grade science domain knowledge and reading comprehension was stronger in students who were ELs than in students who were monolingual. These findings suggest that cultivating science domain knowledge is very important to supporting reading comprehension development in third grade, particularly for students who are ELs.
DOI: 10.3886/e129401v2
title: AERA Open Vol6 No1: Content Counts and Motivation Matters: Reading Comprehension in Third-Grade Students Who Are English Learners

description: This study examined the role of science domain knowledge, reading motivation, and decoding skills in reading comprehension achievement in third-grade students who are English learners (ELs) and students who are monolingual, using a nationally representative data set. Multigroup probit regression analyses showed that third-grade science domain knowledge and motivation for reading, decoding skills, and early attainment of decoding skills were significantly associated with third-grade reading comprehension in both language groups. Also, using Wald chi-square tests, the study showed that the association between third-grade science domain knowledge and reading comprehension was stronger in students who were ELs than in students who were monolingual. These findings suggest that cultivating science domain knowledge is very important to supporting reading comprehension development in third grade, particularly for students who are ELs.
DOI: 10.3886/e113019v1-72720
title: Replication data for: Trade, Domestic Frictions, and Scale Effects

description: Because of scale effects, idea-based growth models imply that larger countries should be much richer than smaller ones. New trade models share the same counterfactual feature. In fact, new trade models exhibit other counterfactual implications associated with scale effects: import shares decrease and relative income levels increase too steeply with country size. We argue that these implications are largely a result of the standard assumption that countries are fully integrated domestically. We depart from this assumption by treating countries as collections of regions that face positive costs to trade among themselves. The resulting model is largely consistent with the data.
DOI: 10.3886/e116401v1-72721
title: Replication data for: Internal Geography, Labor Mobility, and the Distributional Impacts of Trade

description: I develop a spatial-equilibrium model to quantify the distributional impacts of international trade in an economy with intranational trade and migration costs. Focusing on China, I find that international trade increases both between-region inequality among workers with similar skills and within-region inequality between skilled and unskilled workers, with the former accounting for 75 percent of the overall inequality increase. Ignoring spatial frictions will underestimate trade's impact on the overall inequality and overestimate its impact on the aggregate skill premium. I further study how internal trade and Hukou reforms affect the domestic economy and the impacts of international trade.
DOI: 10.3886/e129481
title: Public Preferences for Targeted and Universal Preschool

description: These files contain the anonymized data and analysis files used to create the tables found in "Public Preferences for Targeted and Universal Preschool."<br>The abstract for the paper is found below:<br><br>For the past half century, debate over income-targeted and universal approaches to American preschool policy has divided advocates, policymakers, and practitioners. This is the first paper to inform the debate with evidence from public opinion. It begins with the design and fielding of a nationally representative poll of preferences for targeted and universal preschool (N = 1,000). This poll yields rich data with which to assess the causes and correlates of support for each approach. Results indicate that preschool preferences are conditioned by financial self-interest and egalitarian values and that a savvy policymaker should not necessarily endorse universal over targeted preschool. In fact, Americans facing the possibility of tax increases to fund public preschool and those who prioritize equality of opportunity prefer a targeted approach.<br>
DOI: 10.3886/e129481v1
title: Public Preferences for Targeted and Universal Preschool

description: These files contain the anonymized data and analysis files used to create the tables found in "Public Preferences for Targeted and Universal Preschool."<br>The abstract for the paper is found below:<br><br>For the past half century, debate over income-targeted and universal approaches to American preschool policy has divided advocates, policymakers, and practitioners. This is the first paper to inform the debate with evidence from public opinion. It begins with the design and fielding of a nationally representative poll of preferences for targeted and universal preschool (N = 1,000). This poll yields rich data with which to assess the causes and correlates of support for each approach. Results indicate that preschool preferences are conditioned by financial self-interest and egalitarian values and that a savvy policymaker should not necessarily endorse universal over targeted preschool. In fact, Americans facing the possibility of tax increases to fund public preschool and those who prioritize equality of opportunity prefer a targeted approach.<br>
DOI: 10.3886/e129341
title: Measuring public opinion about autonomous vehicles using data from Reddit, Public Deliberation, and Surveys

description: Replication datasets and R script for the forthcoming publication, entitled "Measuring public opinion about autonomous vehicles using data from Reddit, Public Deliberation, and Surveys", in Public Opinion Quarterly, Special Issue on New Data in Social and Behavioral Research.
DOI: 10.3886/e129341v1
title: Measuring public opinion about autonomous vehicles using data from Reddit, Public Deliberation, and Surveys

description: Replication datasets and R script for the forthcoming publication, entitled "Measuring public opinion about autonomous vehicles using data from Reddit, Public Deliberation, and Surveys", in Public Opinion Quarterly, Special Issue on New Data in Social and Behavioral Research.
DOI: 10.6084/m9.figshare.13466570.v1
title: Data & Figures(Paper title : Collapse of a coastal revetment by the combined effect of anthropogenic and natural disturbances)

description: Observation data used for creating figures in the paper 'Collapse of a coastal revetment by the combined effect of anthropogenic and natural disturbances' and Figures(10)
DOI: 10.6084/m9.figshare.13473726.v1
title: 11.1LAYOUT - Original Article - dr harold-supp table

description: Validation of Saiful Anwar Clinical Congestion Score in Comparison with NT-proBNP for Prediction of Short-term Outcome in Acute Heart Failure with Reduced Ejection Fraction (Supplementary Table)
DOI: 10.6084/m9.figshare.13473726
title: 11.1LAYOUT - Original Article - dr harold-supp table

description: Validation of Saiful Anwar Clinical Congestion Score in Comparison with NT-proBNP for Prediction of Short-term Outcome in Acute Heart Failure with Reduced Ejection Fraction (Supplementary Table)