cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23690877
title: Pinprick-induced gamma-band oscillations are not a useful electrophysiological marker of pinprick hypersensitivity in humans: EEG dataset.

description: Here we make the raw EEG data available belonging to the publication: <br> S. Gousset, DM. Torta, A. Mouraux, J. Lambert, EN. van den Broeke, Pinprick-induced gamma-band oscillations are not a useful electrophysiological marker of pinprick hypersensitivity in humans, Clinical Neurophysiology, 2023. <br> The files are .set files (EEGlab). Of note, the raw EEG signals are already referenced to a nose reference. The dataset contains N=20 participants. For more information please contact the corresponding author.
DOI: 10.6084/m9.figshare.23690877.v1
title: EEG dataset: Pinprick-induced gamma-band oscillations are not a useful electrophysiological marker of pinprick hypersensitivity in humans

description: Here we make the raw EEG data available belonging to the publication: <br> S. Gousset, DM. Torta, A. Mouraux, J. Lambert, EN. van den Broeke, Pinprick-induced gamma-band oscillations are not a useful electrophysiological marker of pinprick hypersensitivity in humans, Clinical Neurophysiology, 2023. <br> The files are .set files (EEGlab). Of note, the raw EEG signals are already referenced to a nose reference. The dataset contains N=20 participants. For more information please contact the corresponding author.
DOI: 10.6084/m9.figshare.23690877.v2
title: Pinprick-induced gamma-band oscillations are not a useful electrophysiological marker of pinprick hypersensitivity in humans: EEG dataset.

description: Here we make the raw EEG data available belonging to the publication: <br> S. Gousset, DM. Torta, A. Mouraux, J. Lambert, EN. van den Broeke, Pinprick-induced gamma-band oscillations are not a useful electrophysiological marker of pinprick hypersensitivity in humans, Clinical Neurophysiology, 2023. <br> The files are .set files (EEGlab). Of note, the raw EEG signals are already referenced to a nose reference. The dataset contains N=20 participants. For more information please contact the corresponding author.
DOI: 10.25919/dmd5-3m39
title: Parkes observations for project P1162 semester 2023APRS_05

description: Pulsar timing is a powerful tool in studying pulsar physics. Discovering more exotic pulsar systems or timing pulsars with higher precision is an essential part of pulsar astronomy. As a recently discovered millisecond pulsar, PSR J1402+13 is an interesting source for follow-up timing observations. First, its apparent spin-down rate is the highest among known millisecond pulsars. This spin-down rate, if confirmed, will place stringent constraints on the spin-up process predicted by pulsar recycling theories. Second, and more importantly, preliminary analysis shows that J1402+13 is a very promising candidate for pulsar timing arrays, with an achievable precision at the level of 6 nanoseconds for 60 minutes observation with Parkes. We have observed J1402+13 for 8 times in the past two months and propose to continue the observations in the coming semester. We apply for another 14 hours to observe the pulsar to extend the timing baseline to one year. This project will derive an ephemeris of the system, which is valuable to understand its formation and evolution history. Furthermore, the observations will allow us to evaluate the timing performance of J1402+13 and its suitability to be included in pulsar timing arrays.
DOI: 10.25919/pde5-7434
title: Parkes observations for project P1176 semester 2023APRS_03

description: Pulsars and their winds are among nature's most powerful particle accelerators, producing particles with energies up to a few PeVatrons. In addition to high-energy radiation from the magnetosphere, the rotational energy of a neutron star is carried away in the form of magnetized ultra-relativistic pulsar winds. Investigation of pulsar wind nebula (PWN) offers an excellent chance to determine the interaction details of relativistic flows with their surroundings that may never be possible in other classes of source. Our recent analyses of ASKAP observations of Galactic Plane uncovered previously known X-ray PWN CXOU J163802.6-471358 (nicknamed as Potoroo). Recently, we have successfully detected a pulsar candidate associated with Potoroo with Parkes telescope. It is detected at 3 GHz with a dispersion measure of DM = 1553 pc cm-3 and a rotation period of 65.74 ms. Here we propose timing observations for this pulsar with the Parkes Ultra-Wideband Low (UWL) receiver. Through pulsar timing, we will be able to obtain precise measurements of the pulsar position and proper motions, and the spin-down of the pulsar which enables us to independently estimate the age of the system. Long-term timing will also enable us to measure the parallax of the system and search for pulsation at high energies (i.e. X-ray and gamma-ray)
DOI: 10.5281/zenodo.7102432
title: Mitigating transcription-replication conflicts: In early Drosophila embryos, rapid onset of transcription after mitosis depends on DNA replication

description: This dataset includes the raw imaging data (exported from Volocity as TIF in Z-stacks or maximal projections) related to the publication: Mitigating transcription-replication conflicts: In early Drosophila embryos, rapid onset of transcription after mitosis depends on DNA replication, Cell Reports 2022.
DOI: 10.5281/zenodo.7089232
title: Mitigating transcription-replication conflicts: In early Drosophila embryos, rapid onset of transcription after mitosis depends on DNA replication

description: This dataset includes the raw imaging data (exported from Volocity as TIF in Z-stacks or maximal projections) related to the publication: Mitigating transcription-replication conflicts: In early Drosophila embryos, rapid onset of transcription after mitosis depends on DNA replication, Cell Reports 2022.
DOI: 10.18112/openneuro.ds004616.v1.0.0
title: Spatial distribution of hand-grasp motor task activity in spinal cord functional magnetic resonance imaging
DOI: 10.5281/zenodo.8136965
title: Stepwise modifications of transcriptional hubs link pioneer factor activity to a burst of transcription

description: This dataset includes the raw imaging data and custom codes related to the publication: Stepwise modifications of transcriptional hubs link pioneer factor activity to a burst of transcription, Nat. Commun., 2023.
DOI: 10.5281/zenodo.8136964
title: Stepwise modifications of transcriptional hubs link pioneer factor activity to a burst of transcription

description: This dataset includes the raw imaging data and custom codes related to the publication: Stepwise modifications of transcriptional hubs link pioneer factor activity to a burst of transcription, Nat. Commun., 2023.
DOI: 10.5281/zenodo.5559804
title: pelvic bone tumour dataset

description: pelvic bone tumour dataset used for deep learning for 2d segmentation and 2d classification of pelvic bone tumours types
DOI: 10.5281/zenodo.5559803
title: pelvic bone tumour dataset

description: pelvic bone tumour dataset used for deep learning for 2d segmentation and 2d classification of pelvic bone tumours types
DOI: 10.25919/hwr1-3y64
title: Parkes observations for project P1050 semester 2023APRS_09

description: This is a request for the observation time for the timing campaign of new pulsars discovered in the reprocessing of the low-latitude Galactic plane section of the HTRU-S survey (HTRU-S LowLat) and the Parkes Multibeam Pulsar Survey (PMPS). We have completed 90 % of the HTRU-S LowLat survey and completed zero acceleration PMPS search with GPU-based coherent acceleration search, template bank, and fast folding algorithm pipelines and now have discovered 112 previously unknown pulsars among which 18 were found in the PMPS. Interesting science can usually only be derived from a new pulsar after confirmation, and a follow-up timing campaign is carried out. At least one year of initial timing is the minimum timespan required to fully characterise any newly-discovered pulsars, essential for deriving pulsar parameters such as the characteristic age, magnetic field strength, and spin-down rate, as well as for detecting any unexpected behaviour of the pulsar which might result from emission instabilities. This project is necessary for the timing of several interesting pulsars, including binary pulsars, high DM pulsars, scattered profile pulsars, and bright ones that show emissions in larger bandwidths in the UWL band. Apart from this, finding the nature of a unique binary pulsar system via a dedicated observing campaign is also another goal. The follow-up timing in semester 2023APRS will assist in completing many exciting large-term science goals.
DOI: 10.5281/zenodo.8133290
title: Multi-Nucleic Acid Interaction Mapping in Single Cell (MUSIC) for simultanouse chromatin, RNA-chromatin and transcriptome mapping at single cell resolution

description: MUSIC manuscript: Joint profiling of multiplex chromatin interactions, gene expression, and RNA-chromatin associations in single cells of the human brain. MUSIC-docker is the customized pipeline to process the raw fastq files to bam files: http://sysbiocomp.ucsd.edu/public/wenxingzhao/MUSIC_docker/intro.html. Each bam file records the final output of our single cell mixed species analysis. Read name recods the cell barcode, complex barcode and I7 index. For each DNA/RNA read, read header contains <code>raw read name</code>| <code>BC3</code>_<code>BC2</code>_<code>BC1</code> - <code>10x barcode</code> # <code>UMI</code>. Details of the read name can be found here: http://sysbiocomp.ucsd.edu/public/wenxingzhao/MUSIC_docker/step.html#demultiplexing. merge_DNA [RNA]_human [mouse].sort.bam: bam file of DNA [RNA] reads from the mix species library (H1+E14) that can uniquely mapped to the human [mouse] genome. PCR duplicates have been removed.
DOI: 10.5281/zenodo.8133289
title: Multi-Nucleic Acid Interaction Mapping in Single Cell (MUSIC) for simultanouse chromatin, RNA-chromatin and transcriptome mapping at single cell resolution

description: MUSIC manuscript: Joint profiling of multiplex chromatin interactions, gene expression, and RNA-chromatin associations in single cells of the human brain. MUSIC-docker is the customized pipeline to process the raw fastq files to bam files: http://sysbiocomp.ucsd.edu/public/wenxingzhao/MUSIC_docker/intro.html. Each bam file records the final output of our single cell mixed species analysis. Read name recods the cell barcode, complex barcode and I7 index. For each DNA/RNA read, read header contains <code>raw read name</code>| <code>BC3</code>_<code>BC2</code>_<code>BC1</code> - <code>10x barcode</code> # <code>UMI</code>. Details of the read name can be found here: http://sysbiocomp.ucsd.edu/public/wenxingzhao/MUSIC_docker/step.html#demultiplexing. merge_DNA [RNA]_human [mouse].sort.bam: bam file of DNA [RNA] reads from the mix species library (H1+E14) that can uniquely mapped to the human [mouse] genome. PCR duplicates have been removed.
DOI: 10.5281/zenodo.8151201
title: Single-cell analysis of open chromatin landscapes across diverse cancer types - Supplemental Files

description: TCGA Enhancer differentials objects between cancer to control
DOI: 10.5281/zenodo.8151200
title: Single-cell analysis of open chromatin landscapes across diverse cancer types - Supplemental Files

description: TCGA Enhancer differentials objects between cancer to control
DOI: 10.5519/qd.o4xnxwqh
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (0 records)
DOI: 10.5281/zenodo.8151197
title: Building Envelopes in New York's CBD: Normalized Signed Distance Function Representation

description: This dataset, developed to substantiate the findings of the study by Zhuang et al. [1], comprises 1,521 building envelopes from the Central Business District (CBD) of New York City (NYC), represented in three formats: the wavefront (obj) format, the Signed Distance Function (SDF) format and 3D binary-volume format. The original mesh data is procured from the NYC Open Data Portal [2]. The process of data manipulation is thoroughly delineated in the referenced research paper [1]. [1] Zhuang, X., Ju, Y., Yang, A., & Caldas, L. (2023). Synthesis and Generation for 3D Architecture Volume with Generative Modeling. International Journal of Architecture Computing, AI, Architecture, Accessibility, & Data Justice. DOI: 10.1177/14780771231168233. [2] New York city department of city planning. NYC 3D model by community district, manhattan district, MN05. 2018. Available at: https://www.nyc.gov/site/planning/data-maps/open-data/dwn-nyc-3d-model-download.page. Accessed 15 July 2023.
DOI: 10.5281/zenodo.8151196
title: Building Envelopes in New York's CBD: Normalized Signed Distance Function Representation

description: This dataset, developed to substantiate the findings of the study by Zhuang et al. [1], comprises 1,521 building envelopes from the Central Business District (CBD) of New York City (NYC), represented in three formats: the wavefront (obj) format, the Signed Distance Function (SDF) format and 3D binary-volume format. The original mesh data is procured from the NYC Open Data Portal [2]. The process of data manipulation is thoroughly delineated in the referenced research paper [1]. [1] Zhuang, X., Ju, Y., Yang, A., & Caldas, L. (2023). Synthesis and Generation for 3D Architecture Volume with Generative Modeling. International Journal of Architecture Computing, AI, Architecture, Accessibility, & Data Justice. DOI: 10.1177/14780771231168233. [2] New York city department of city planning. NYC 3D model by community district, manhattan district, MN05. 2018. Available at: https://www.nyc.gov/site/planning/data-maps/open-data/dwn-nyc-3d-model-download.page. Accessed 15 July 2023.
DOI: 10.6084/m9.figshare.23677710
title: Supplementary_data.zip

description: These files are supplementary data for the Research article "Three <em>de novo</em> assembled wild cacao genomes from Upper Amazon reveal new insights into an early divergence of chocolate trees" <br> Orestis Nousias<sup>1</sup>,*, Jinfang Zheng<sup>1</sup>,*, Tang Li<sup>1</sup>, Lyndel W Meinhardt<sup>2</sup>, Bryan Bailey<sup>2</sup>, Osman Gutierrez<sup>3</sup>, Stephen P. Cohen<sup>2</sup>, Dapeng Zhang<sup>2</sup>,#, Yanbin Yin<sup>1</sup>,# <em>1Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA</em> <em>2U.S. Department of Agriculture, Sustainable Perennial Crops Laboratory, Beltsville, MD, USA</em> <em>3U.S. Department of Agriculture, Subtropical Horticulture Research Station, Miami, FL, USA</em> <em>*co-first authors</em> #corresponding authors Yanbin Yin Tel: 1-402-472-4303 Email: yyin@unl.edu Dapeng Zhang Tel: 1-301-504-7477 Email: dapeng.zhang@usda.gov <br> <br> <strong>The article is not yet submitted to a journal</strong>
DOI: 10.6084/m9.figshare.23677710.v1
title: Supplementary_data.zip

description: These files are supplementary data for the Research article "Three <em>de novo</em> assembled wild cacao genomes from Upper Amazon reveal new insights into an early divergence of chocolate trees" <br> Orestis Nousias<sup>1</sup>,*, Jinfang Zheng<sup>1</sup>,*, Tang Li<sup>1</sup>, Lyndel W Meinhardt<sup>2</sup>, Bryan Bailey<sup>2</sup>, Osman Gutierrez<sup>3</sup>, Stephen P. Cohen<sup>2</sup>, Dapeng Zhang<sup>2</sup>,#, Yanbin Yin<sup>1</sup>,# <em>1Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA</em> <em>2U.S. Department of Agriculture, Sustainable Perennial Crops Laboratory, Beltsville, MD, USA</em> <em>3U.S. Department of Agriculture, Subtropical Horticulture Research Station, Miami, FL, USA</em> <em>*co-first authors</em> #corresponding authors Yanbin Yin Tel: 1-402-472-4303 Email: yyin@unl.edu Dapeng Zhang Tel: 1-301-504-7477 Email: dapeng.zhang@usda.gov <br> <br> <strong>The article is not yet submitted to a journal</strong>
DOI: 10.25919/bse1-da97
title: Parkes observations for project P1177 semester 2023APRS_02

description: We propose to time a high Galactic latitude millisecond pulsar, J1947-18, which was previously identified as isolated. Recently, during the re-processing of Parkes archival data (Project code: P1059), we found that this pulsar is in a binary system. This pulsar was originally discovered in archival data of the intermediate and high Galactic latitude parts of the Southern High Time Resolution Universe pulsar survey and have rotational period of 2.60 ms and DM of 25 pc cm-3. Here we propose make use of Parkes non-Galactic observing time and confirm the nature of this potential binary and measure its spin and orbital parameters. This information could lead to new opportunities of measuring neutron star mass, testing gravitational theories, and MSPs formation channels at high galactic latitudes.
DOI: 10.34740/kaggle/dsv/6141058
title: Inverter Load Analysis Dataset
DOI: 10.25919/t7qs-pn92
title: Parkes observations for project PX600 semester 2020APRS_89

description: The Galactic Center (GC) is a key target for the radio component of Breakthrough Listen (BL) program. Offering the largest amount of stars in any given direction in the sky, the GC is widely cited as a location believed to harbour advanced civilizations, and it is also the most energetic region in the Milky Way. We aim to conduct BL-GC Survey with Parkes radio telescope for around 350 hours. We will cover the frequency range from 700 MHz to 4 GHz, utilizing the newly installed ultra-wideband receiver. Our team has already leveraged both standard and bespoke tools to construct a flexible software stack to search data for signals of interest. We will look for signals from extraterrestrial intelligence (ETI) by searching for both simple narrow-band signals and complex modulated signals. Along with that, as an ancillary science, we will also search for accelerated pulsars — likely orbiting a supermassive black hole at the centre of the Milky Way Galaxy. Data products produced during this program will also be publically available to engage larger pulsar community
DOI: 10.5281/zenodo.8151234
title: Navigating Power in the Multilingual Classroom

description: Interview Data
DOI: 10.5281/zenodo.8151233
title: Navigating Power in the Multilingual Classroom

description: Interview Data
DOI: 10.34740/kaggle/dsv/6141267
title: arXiv Dataset
DOI: 10.5519/qd.mki3dmuy
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (304 records)
DOI: 10.5519/qd.rxogej8w
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (709 records)
DOI: 10.14457/tu.the.2021.1191
title: Evaluation of surface characteristics and mechanical properties of denture base resins containing nano-sized surface pre-reacted glass-ionomer filler

description: Background: While poly (methyl methacrylate) (PMMA) denture base resin materials containing micron-sized surface pre-reacted glass-ionomer (S-PRG) filler was approved to be used in clinic applications, the understanding of newly developed PMMA denture base resin containing nano-sized S-PRG filler was very low. This study was conducted to investigate the surface roughness, surface hardness, and flexural strength properties of PMMA denture base resin containing nano-sized SPRG filler compare to micron-sized S-PRG filler. Methods: Bars and discs specimen were prepared by ready mixed polymer powder of PMMA containing 0 (control), 10 (n10%), 20 (n20%), 30 (n30%) wt% nano-sized and 20 (m20%) wt% micron-sized surface S-PRG filler. After water storage at 37°C, surface morphology (n=2), surface roughness (n=6) and surface hardness (n=6) of all discs were measured using SEM, contact profilometer and micro-hardness tester respectively. The flexural strength (n=5) of all bars was measured using a universal testing machine, then the fractured surfaces were examined by SEM. ANOVA was used to analyze surface roughness, surface hardness, and flexural strength value (p ≤0.05). Results: In terms of surface roughness and surface hardness, the data showed no statistically significant difference between all groups. In terms of flexural strength, n10% (69.7 N), n20% (57.6 N), m20% (67.05 N) groups showed significantly lower levels of flexural strength compared with 0% control group (93.57 N), but n10% and m20% group values remaining within ISO standard 20795-1. The n30% (44.38 N) group showed the lowest flexural strength statistic significantly compared with all groups. Conclusions: The flexural strength of PMMA denture base resin was diminished by adding more amount of nano-sized S-PRG filler but did not generate any significant change on surface roughness or surface hardness.
DOI: 10.14457/tu.the.2021.1192
title: Effect of incorporation of cobalt ions into hydroxyapatite and its release on osteoclast differentiation and resorptive activity

description: Synthetic hydroxyapatite (HA) is developed to enable minimal invasive surgery and to address high demands for bone augmentation and regeneration in dental implant patients. Since HA has low solubility rate, a concept behind the study was to incorporate metal ions into HA to improve limitation of hydroxyapatite solubility property. Cobalt ion was selected because it can stimulate osteoclastogenesis and resorptive activity by mimicking hypoxia pathway. In this study, different concentrations of cobalt ions (Co2+) 40, 400, 4000 and 8000 μM were incorporated into HA via ion exchange method. The resulting samples were uniaxially pressed into the disc form and sintered at temperature at 1100°C. Microstructure, chemical, and physical properties of the HA and cobalt ion-incorporated HA (HACo) were characterized. Subsequently, RAW 264.7 cells were cultured in the presence of RANKL on these discs to examine the effects of Co2+ on osteoclast formation and resorptive activity. In viability test, there was no statistically significant difference from control group of the cells in all disc conditions at day 7. The release of cobalt ions in the culture media was related to the concentration of Co2+ doping. It was found that Co2+ increased the area of TRAP staining. In general, the Co2+ concentrations of 40-400 μM were effective in increasing TRAP staining area. HACo 400 μM significantly increased the area by 4-fold of control, and followed by HACo 40 μM which stimulated osteoclast differentiation by 3.2-fold. In addition, TRAP activity and number of nuclei showed no statistically significant differences between all groups. HACo 40-4000 μM demonstrated statistically significant increase in resorption area when compared with control. The most effective was observed at HACo 400 μM by 6-fold of control. In conclusion, this study showed the potential of this relatively simple approach to induce osteoclast resorption of HA. The 40-400 μM of Co2+ were favorable concentrations to improve limitations of HA as bone substituted biomaterials.