cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.i8w1ra
title: Occurrence Download

description: A dataset containing 364 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acronychia pedunculata (L.) Miq.",
 "HasCoordinate is true",
 {
 "or" : [
 "HasGeospatialIssue is false",
 "HasGeospatialIssue is true"
 ]
 }
 ]
}

 The dataset includes 364 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024150-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9f3rm
title: Occurrence Download

description: A dataset listing the 174 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Selaginella P.Beauv.)"
 ]
}

 The dataset's 174 records were derived from 191 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021656-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21942/uva.27255978
title: Multi-scale dynamics samples

description: Samples corresponding to Explaining multi-scale choice dynamics paper. See the corresponding OSF page (https://osf.io/fbu59/) for the corresponding code.
DOI: 10.15468/dl.tjaujj
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Mezia araujoi Schwacke"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021666-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.7kycy907
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (11 records)
DOI: 10.5284/1118296
title: Images and Report from a Historic Building Recording at the Woodthorpe Floodgates, Loughborough, Leicestershire, November 2022

description: This collection comprises site photographs and a report from a historic building recording of the Woodthorpe Floodgates, Loughborough, Leicestershire, in advance of the removal of the existing gates and replacement with timber fenders. The survey was commissioned by The Canal & River Trust to York Archaeology in October 2022, and it undertaken on 7th November 2022.
DOI: 10.15468/dl.hjp79u
title: Occurrence Download

description: A dataset containing 75024 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhododendron ferrugineum L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "Year is less than or equal to 2024",
 "Month is greater than or equal to January",
 "Month is less than or equal to September",
 "Continent is Europe"
 ]
}

 The dataset includes 75024 records from 238 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021665-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qpu92j
title: Occurrence Download

description: A dataset containing 38386 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trochalopteron lineatum (Vigors, 1831)"
 ]
}

 The dataset includes 38386 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021667-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13938523
title: Mastodon example data set - view timepoints of drosophila embryogenesis

description: Contains a three-dimensional time-lapse data set with 31 time points. It corresponds to a cropped sub-region of the Drosophila SiMView recording presented in the main text of Amat et al., Nature Methods 2014

The dataset has been converted to file formats that can be used by the FIJI plugin Mastodon.

Amat, F., Lemon, W., Mossing, D. et al. Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data. Nat Methods 11, 951–958 (2014). https://doi.org/10.1038/nmeth.3036
DOI: 10.5281/zenodo.13951253
title: hoplobatrachus_occipitalis_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.13951254
title: hoplobatrachus_occipitalis_zanfona_1.fasta.gz
DOI: 10.15468/dl.f2fevd
title: Occurrence Download

description: A dataset listing the 4226 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Swiss National Databank of Vascular Plants"
 ]
}

 The dataset's 4226 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021664-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13951279
title: sicyos_hispidus_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.13951280
title: sicyos_hispidus_zanfona_1.fasta.gz
DOI: 10.15468/dl.mbr3c6
title: Occurrence Download

description: A dataset containing 332 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Stromanthe schottiana (Körn.) Eichler"
 ]
}

 The dataset includes 332 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021668-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13940435
title: Deliverable T2.2 soil threats and soil ecosystem services of interest in SERENA.xlsx

description: The internal EJP SOIL project SERENA contributed to the evaluation of soil multifunctionality aiming at providing assessment tools for land planning and soil policies at different scales. By co-working with relevant stakeholders, the project provided co-developed indicators and associated cookbooks to assess and map them, to report both on soil degradation, soil-based ecosystem services and their bundles, under actual conditions and for climate and land-use changes, at the regional, national, and European scales.                                                                                 

In T2.2 we discussed the definitions of soil threats (ST) and soil-based ecosystem services (SES) to be further analysed in SERENA. In this process we kept information from the literature review and the results of the national prioritisation of ST and SES. This dataset description is an Excel with sheets of literature search and national prioritisation from the participating countries. Please read metadata at the fist sheet. Furthermore, the last sheet shows the results of our discussion on definitions that we had to clarify before the prioritisation.
DOI: 10.5281/zenodo.13940436
title: Deliverable T2.2 soil threats and soil ecosystem services of interest in SERENA.xlsx

description: The internal EJP SOIL project SERENA contributed to the evaluation of soil multifunctionality aiming at providing assessment tools for land planning and soil policies at different scales. By co-working with relevant stakeholders, the project provided co-developed indicators and associated cookbooks to assess and map them, to report both on soil degradation, soil-based ecosystem services and their bundles, under actual conditions and for climate and land-use changes, at the regional, national, and European scales.                                                                                 

In T2.2 we discussed the definitions of soil threats (ST) and soil-based ecosystem services (SES) to be further analysed in SERENA. In this process we kept information from the literature review and the results of the national prioritisation of ST and SES. This dataset description is an Excel with sheets of literature search and national prioritisation from the participating countries. Please read metadata at the fist sheet. Furthermore, the last sheet shows the results of our discussion on definitions that we had to clarify before the prioritisation.
DOI: 10.6084/m9.figshare.27256728
title: Samsoniella_scoliopterygi_alignment.fasta

description: Alignment
DOI: 10.6084/m9.figshare.27256728.v1
title: Samsoniella_scoliopterygi_alignment.fasta

description: Alignment
DOI: 10.5284/1118638
title: Images and GIS Data from an Archaeological Monitoring and Recording at Court Close, Orchard Close, Wanborough, Wiltshire, January-April 2021

description: This collection comprises site photographs and GIS data from an archaeological monitoring and recording carried out by Foundations Archaeology between January and April 2021 at Court Close, Orchard Close, Wanborough, Wiltshire.
DOI: 10.15468/dl.kuq6sk
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Venezuela (Bolivarian Republic of)",
 "TaxonKey is Macrobrachium amazonicum (Heller, 1862)"
 ]
}

 The dataset includes 92 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021669-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13951333
title: smilisca_baudinii_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.13951334
title: smilisca_baudinii_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.13951354
title: thladiantha_angustisepala_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.13951355
title: thladiantha_angustisepala_zanfona_1.fasta.gz
DOI: 10.15468/dl.bc4phg
title: Occurrence Download

description: A dataset containing 2056147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (iNaturalist Research-grade Observations, Observation.org, Nature data from around the World)",
 "TaxonKey is one of (Calopterygidae, Chlorocyphidae, Dicteriadidae, Euphaeidae, Lestoideidae, Polythoridae, Coenagrionidae, Isostictidae, Platycnemididae, Pseudostigmatidae, Hemiphlebiidae, Lestidae, Perilestidae, Synlestidae, Platystictidae)"
 ]
}

 The dataset includes 2056147 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021653-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27014134.v1
title: Avian influenza virus sequence with meta information and phylogeny from GISAID and NCBI.

description: Avian influenza virus sequnces, assigned gene segment lineages and virus genotypes
DOI: 10.5284/1118288
title: Images and Site Records from a Watching Brief at The Valiant Soldier, 79 Fore Street, Buckfastleigh, Devon, April 2023

description: This collection comprises images and site records from an archaeological watching brief carried out by Jonny Martin (Freelance) with managerial aid from ISCA Archaeology Limited on the 17th and 18th of April 2023, on behalf of Stephen Parker of the Buckfastleigh Trust, during groundworks associated with the garden of The Valiant Soldier, Fore Street, Buckfastleigh.
DOI: 10.6084/m9.figshare.25844095
title: Under-ice hypolimnetic oxygen depletion in a high-altitude brackish and dimictic lake, central of the Tibetan Plateau

description: This data is about of buoy monitoring dissolved oxygen, water temperature and conductivity during winters of 2012-2013 and 2013-2014. The investigating site is Nam Co lake, central of the Tibetan Plateau.
DOI: 10.15468/dl.yhf3de
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "StateProvince is one of (Uttarakhand State, Uttarakhand state, Uttarakhand, Uttarakhand (Uttaranchal), Uttarakhand, Dehradun)",
 "TaxonKey is Danaus chrysippus (Linnaeus, 1758)"
 ]
}

 The dataset includes 134 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021673-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25844095.v1
title: Under-ice hypolimnetic oxygen depletion in a high-altitude brackish and dimictic lake, central of the Tibetan Plateau

description: This data is about of buoy monitoring dissolved oxygen, water temperature and conductivity during winters of 2012-2013 and 2013-2014. The investigating site is Nam Co lake, central of the Tibetan Plateau.
DOI: 10.15468/dl.ps6c7w
title: Occurrence Download

description: A dataset containing 1791223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than 50000",
 "Year is 2010",
 "DecimalLongitude is greater than or equal to 7.0",
 "DecimalLongitude is less than or equal to 13.0",
 "DecimalLatitude is greater than or equal to 54.5",
 "DecimalLatitude is less than or equal to 58.0"
 ]
}

 The dataset includes 1791223 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021659-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.1ilzuzh0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (716 records)
DOI: 10.5281/zenodo.13951370
title: thladiantha_pustulata_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.13951371
title: thladiantha_pustulata_zanfona_1.fasta.gz
DOI: 10.15468/dl.t6tsuf
title: Occurrence Download

description: A dataset containing 183130 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Xestia xanthographa (Denis & Schiffermüller, 1775)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 183130 records from 195 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021658-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gnvect
title: Occurrence Download

description: A dataset containing 75024 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhododendron ferrugineum L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "Year is less than or equal to 2024",
 "Month is greater than or equal to January",
 "Month is less than or equal to September",
 "Continent is Europe"
 ]
}

 The dataset includes 75024 records from 238 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021674-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1118293
title: Digital Data from an Archaeological Evaluation and Open Area Excavation at Former Rolls Royce Light Alloy Foundry, Derby, 2023

description: This collection comprises images, CAD, spreadsheet, and site records from a programme of archaeological work consisting of evaluation trenching and open area excavations by Archaeological Research Services Ltd (ARS) at at the Former Rolls Royce Light Alloy Foundry, Derby, during January and February 2023.
DOI: 10.15468/dl.w6xzhu
title: Occurrence Download

description: A dataset containing 39195 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Hada plebeja Linnaeus, 1761",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 39195 records from 160 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021677-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zsv7wq
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Drepanolejeunea pinnatiloba Schiffn."
 ]
}

 The dataset includes 19 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021678-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5h708c2s
title: MassIVE MSV000096126 - Streamlining Workflows in Ion Mobility Data Acquisition, Calibration and Processing: A Cross-Platform Assessment of Drift Tube and Traveling Wave Methodologies
title: Ion mobility resolving power and instrumental figures of merit dataset with limits of detection and cell lysate analysis.
DOI: 10.15468/dl.prx4hq
title: Occurrence Download

description: A dataset containing 571 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ramularia didyma Unger"
 ]
}

 The dataset includes 571 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021681-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3pngtx
title: Occurrence Download

description: A dataset containing 8115 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Lacanobia contigua (Denis & Schiffermüller), 1775",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 8115 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021680-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8427311
title: Aberrant gene expression prediction benchmark based on GTEx v8

description: This repository contains the aberrant gene expression prediction benchmark data as well as the necessary expected gene expression across tissues and tissue-specific isoform contribution scores for AbExp prediction. 

The aberrant gene expression prediction benchmark data (aberrant_expression_prediction_benchmark.parquet) contains the following columns:



individual: GTEx individual

gene: Ensembl gene identifier

tissue: GTEx tissue

tissue_type: GTEx tissue type

mu: OUTRIDER-estimated expected gene expression

theta: OUTRIDER-estimated gene dispersion

counts: Raw gene expression count

normalized_counts: OUTRIDER-normalized gene expression count

l2fc: log2 fold change between observed and expected gene expression count

zscore: z-score of gene expression, obtained by quantile-mapping the OUTRIDER-estimated distribution to the standard normal distribution

nominal_pvalue: OUTRIDER-estimated p-value of being an expression outlier

FDR: FDR-adjusted p-value of being an expression outlier

is_in_benchmark: Whether this observation is part of the aberrant gene expression prediction benchmark

is_underexpressed_outlier: Whether this observation is an underexpression outlier at FDR < 5%. This is the benchmark prediction label.


The isoform proportions table (gtex_v8_isoform_proportions.tsv) contains the following columns:



gene: Ensembl gene identifier

tissue_type: GTEx tissue type

tissue: GTEx tissue

transcript: Ensembl transcript identifier

mean_transcript_proportions: mean transcript proportions across individuals in GTEx v8

median_transcript_proportions: median transcript proportions across individuals in GTEx v8

sd_transcript_proportions: standard deviation of transcript proportions across individuals in GTEx v8


The expected gene expression table (gtex_v8_expected_expression.tsv) contains the following columns:



gene: Ensembl gene identifier

tissue_type: GTEx tissue type

tissue: GTEx tissue

gene_is_expressed: Whether the gene is expressed in the tissue

median_expression: median OUTRIDER-estimated expected gene expression (mu) across individuals

expression_dispersion: OUTRIDER-estimated gene dispersion (theta)
DOI: 10.5284/1118295
title: Data from a Magnetometry Survey to the East of Rudgeway Lane, Wheatpieces, Tewkesbury, May 2022

description: This collection comprises geophysics data, greyscale raster images, a CAD drawing and a report from a geophysical survey carried out by SUMO Geophysics to the East of Rudgeway Lane, Wheatpieces, Tewkesbury in May 2022.
DOI: 10.6084/m9.figshare.27247428
title: raw data

description: The present research investigates the impact of increasing dietary methionine supplementation levels on the immune responses of European seabass (<i>Dicentrarchus labrax</i>) against <i>Tenacibaculum maritimum</i>, focusing on both systemic and local immune responses.
DOI: 10.15468/dl.jdq6pv
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Guatemala",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lamourouxia multifida Kunth"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066351-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kr6jde
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lamourouxia gutierrezii Oerst."
 ]
}

 The dataset includes 78 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048032-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.spusfh
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Guatemala",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lamourouxia xalapensis Kunth"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048037-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.