cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13152117.v1
title: Additional file 1 of Downregulation of the ubiquitin ligase KBTBD8 prevented epithelial ovarian cancer progression

description: Additional file 1: Dataset 1. This table includes scores of all the points of the ovarian tissue microarray. Table 1 in the results part was generalized from this table. Dataset 2: This table contains all upregulated genes and related information in the KBTBD8-knockdown group in contrast to control ( $$\left| {\log 2{\text{FC}}} \right| \ge 1$$ log 2 FC ≥ 1 ). Dataset 3: This table contains all downregulated genes and related information in the KBTBD8-knockdown group in contrast to control ( $$\left| {\log 2{\text{FC}}} \right| \ge 1$$ log 2 FC ≥ 1 ). Dataset 4: This table includes all 39 genes and related information that encoding proteins interacting with the KBTBD8-regulated multiple essential cell cycle kinases in Fig. 2l.
DOI: 10.6084/m9.figshare.13152187
title: Additional file 2 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 2: Table S4. List of variants significantly associated with lipid levels in European Americans in the CNICS HIV cohort (p &lt; E-5) and in Willer et al. [31] (p &lt; 0.05).
DOI: 10.6084/m9.figshare.20488478
title: Additional file 3 of A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population

description: Additional file 3: Table S3. Validation of CNVs detected in 50K SNP array using four different callers based on whole-genome resequencing data.
DOI: 10.6084/m9.figshare.13152180
title: Additional file 8 of Insights into the mechanism of Arnebia euchroma on leukemia via network pharmacology approach

description: Additional file 8. Table S6. Docking scores of 16 pairs of PCTIs.
DOI: 10.6084/m9.figshare.13152187.v2
title: Additional file 2 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 2: Table S4. List of variants significantly associated with lipid levels in European Americans in the CNICS HIV cohort (p &lt; E-5) and in Willer et al. [31] (p &lt; 0.05).
DOI: 10.6084/m9.figshare.8957828.v1
title: Additional file 7: of The heterotrimeric G protein Î˛ subunit RGB1 is required for seedling formation in rice

description: Table S2. Genotypes of the seeds in the T0-, T1-, and T2-generation transgenic seedlings. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.13152187.v1
title: Additional file 2 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 2: Table S4. List of variants significantly associated with lipid levels in European Americans in the CNICS HIV cohort (p &lt; E-5) and in Willer et al. [31] (p &lt; 0.05).
DOI: 10.6084/m9.figshare.13152229
title: Additional file 5 of Analysing the meta-interaction between pathways by gene set topological impact analysis

description: Additional file 5: Matrix Data 2. GESTIA score matrix for Fig. 2b. (XLS 3 kb)
DOI: 10.6084/m9.figshare.8957837
title: Additional file 9: of The heterotrimeric G protein Î˛ subunit RGB1 is required for seedling formation in rice

description: Table S4. GO, COG, and KEGG classification tables. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.13152235.v1
title: Additional file 7 of Analysing the meta-interaction between pathways by gene set topological impact analysis

description: Additional file 7: Matrix Data 4. GESTIA score matrix for Fig. 3d. (XLS 5 kb)
DOI: 10.6084/m9.figshare.8957837.v1
title: Additional file 9: of The heterotrimeric G protein Î˛ subunit RGB1 is required for seedling formation in rice

description: Table S4. GO, COG, and KEGG classification tables. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.13152138
title: Additional file 2 of Early response to heat stress in Chinese tongue sole (Cynoglossus semilaevis): performance of different sexes, candidate genes and networks

description: Additional file 2. Shared and sex-specific genes involved in high temperature response. Interested differentially expressed genes (DEGs) shared in females, pseudomales and males, and DEGs specifically changed in females, pseudomales or males between control (CT) and heat-stress (HS) groups were listed.
DOI: 10.6084/m9.figshare.13152193.v2
title: Additional file 4 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 4: Table S6. List of variants significantly associated with lipid levels in African Americans in the CNICS HIV cohort (p &lt; E-5) and in Willer et al. [31] (p &lt; 0.05).
DOI: 10.6084/m9.figshare.13152196.v1
title: Additional file 5 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 5: Table S7. List of variants significantly associated with lipid levels in African Americans in the CNICS HIV cohort (p &lt; E-5), non-significant in Willer et al. [31] (p &gt; 0.05) and with no overlap between 99% confidence intervals for the beta coefficients between CNICS and Willer et al.
DOI: 10.6084/m9.figshare.20488478.v1
title: Additional file 3 of A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population

description: Additional file 3: Table S3. Validation of CNVs detected in 50K SNP array using four different callers based on whole-genome resequencing data.
DOI: 10.6084/m9.figshare.13152136.v1
title: Additional file 4 of Exogenous melatonin enhances salt secretion from salt glands by upregulating the expression of ion transporter and vesicle transport genes in Limonium bicolor

description: Additional file 4. All data generated during this study.
DOI: 10.6084/m9.figshare.13152190.v2
title: Additional file 3 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 3: Table S5. List of variants significantly associated with lipid levels in European Americans in the CNICS HIV cohort (p &lt; E-5), non-significant in Willer et al. [31] (p &gt; 0.05) and with no overlap between 99% confidence intervals for beta coefficients between CNICS and Willer et al.
DOI: 10.6084/m9.figshare.13152193.v1
title: Additional file 4 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 4: Table S6. List of variants significantly associated with lipid levels in African Americans in the CNICS HIV cohort (p &lt; E-5) and in Willer et al. [31] (p &lt; 0.05).
DOI: 10.6084/m9.figshare.17870566
title: Additional file 1 of The recombinant pseudorabies virus expressing porcine deltacoronavirus spike protein is safe and effective for mice

description: Additional file 1.
DOI: 10.5281/zenodo.7666730
title: zackbatist/open-archaeo: 2023-02-22

description: A list of open source archaeological software and resources.
DOI: 10.6084/m9.figshare.13152199.v2
title: Additional file 6 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 6: Table S8. List of variants significantly associated with lipid levels in European American females (p &lt; E-5) but not in males (p &gt; 0.05) in the CNICS cohort with no overlap between 99% confidence intervals for beta coefficients between females and males.
DOI: 10.6084/m9.figshare.13152202
title: Additional file 7 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 7: Table S10. Prevalence and clinical impact of high European-based and multiethnic polygenic risk scores for type-2 diabetes (T2D) and myocardial infarction (MI) in people living with HIV.
DOI: 10.6084/m9.figshare.13152223
title: Additional file 3 of Analysing the meta-interaction between pathways by gene set topological impact analysis

description: Additional file 3. R code for constructing global network. (TXT 2 kb)
DOI: 10.6084/m9.figshare.13152165.v1
title: Additional file 3 of Insights into the mechanism of Arnebia euchroma on leukemia via network pharmacology approach

description: Additional file 3 Table S1. Components of A. euchroma and content score.
DOI: 10.6084/m9.figshare.13152174.v1
title: Additional file 6 of Insights into the mechanism of Arnebia euchroma on leukemia via network pharmacology approach

description: Additional file 6. Table S4. Weighted component-important target interactions.
DOI: 10.6084/m9.figshare.13152235
title: Additional file 7 of Analysing the meta-interaction between pathways by gene set topological impact analysis

description: Additional file 7: Matrix Data 4. GESTIA score matrix for Fig. 3d. (XLS 5 kb)
DOI: 10.6084/m9.figshare.20488490.v1
title: Additional file 6 of A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population

description: Additional file 6: Table S6. The explained genetic variance of SNPs within significant windows for LMD.
DOI: 10.6084/m9.figshare.13152303.v1
title: Additional file 2 of Isolation and characterization of Uropathogenic Escherichia coli (UPEC) from red panda (Ailurus fulgens)

description: Additional file 2. Antibiotic resistance protein of the E. coli chromosome isolated from the red panda.
DOI: 10.6084/m9.figshare.13152171.v1
title: Additional file 5 of Insights into the mechanism of Arnebia euchroma on leukemia via network pharmacology approach

description: Additional file 5. Table S3. Eight central attributes of targets.
DOI: 10.6084/m9.figshare.13152190
title: Additional file 3 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 3: Table S5. List of variants significantly associated with lipid levels in European Americans in the CNICS HIV cohort (p &lt; E-5), non-significant in Willer et al. [31] (p &gt; 0.05) and with no overlap between 99% confidence intervals for beta coefficients between CNICS and Willer et al.
DOI: 10.6084/m9.figshare.8970698
title: Sequencing quality control for 141 transcriptomes .

description: Sequencing quality control
DOI: 10.6084/m9.figshare.13152180.v1
title: Additional file 8 of Insights into the mechanism of Arnebia euchroma on leukemia via network pharmacology approach

description: Additional file 8. Table S6. Docking scores of 16 pairs of PCTIs.
DOI: 10.6084/m9.figshare.13152190.v1
title: Additional file 3 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 3: Table S5. List of variants significantly associated with lipid levels in European Americans in the CNICS HIV cohort (p &lt; E-5), non-significant in Willer et al. [31] (p &gt; 0.05) and with no overlap between 99% confidence intervals for beta coefficients between CNICS and Willer et al.
DOI: 10.6084/m9.figshare.13152193
title: Additional file 4 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 4: Table S6. List of variants significantly associated with lipid levels in African Americans in the CNICS HIV cohort (p &lt; E-5) and in Willer et al. [31] (p &lt; 0.05).
DOI: 10.6084/m9.figshare.20488493.v1
title: Additional file 7 of A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population

description: Additional file 7: Table S7. The explained genetic variance of SNPs within significant windows for LMP.
DOI: 10.6084/m9.figshare.13152196.v2
title: Additional file 5 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 5: Table S7. List of variants significantly associated with lipid levels in African Americans in the CNICS HIV cohort (p &lt; E-5), non-significant in Willer et al. [31] (p &gt; 0.05) and with no overlap between 99% confidence intervals for the beta coefficients between CNICS and Willer et al.
DOI: 10.6084/m9.figshare.13152199
title: Additional file 6 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 6: Table S8. List of variants significantly associated with lipid levels in European American females (p &lt; E-5) but not in males (p &gt; 0.05) in the CNICS cohort with no overlap between 99% confidence intervals for beta coefficients between females and males.
DOI: 10.6084/m9.figshare.13152330.v1
title: Additional file 10 of Potential role of intestinal microflora in disease progression among patients with different stages of Hepatitis B

description: Additional file 10: Table S8. Specific flora with potential taxonomic function (AUC &gt; 0.7) revealed by the ROC curve.
DOI: 10.6084/m9.figshare.13152199.v1
title: Additional file 6 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 6: Table S8. List of variants significantly associated with lipid levels in European American females (p &lt; E-5) but not in males (p &gt; 0.05) in the CNICS cohort with no overlap between 99% confidence intervals for beta coefficients between females and males.
DOI: 10.6084/m9.figshare.13152333
title: Additional file 11 of Potential role of intestinal microflora in disease progression among patients with different stages of Hepatitis B

description: Additional file 11: Table S9. Microflora that were highly correlated with clinical indicators.
DOI: 10.6084/m9.figshare.13152202.v1
title: Additional file 7 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 7: Table S10. Prevalence and clinical impact of high European-based and multiethnic polygenic risk scores for type-2 diabetes (T2D) and myocardial infarction (MI) in people living with HIV.
DOI: 10.6084/m9.figshare.13152342.v1
title: Additional file 14 of Potential role of intestinal microflora in disease progression among patients with different stages of Hepatitis B

description: Additional file 14: Table S11. Correlation of the predicted diverse functions and the Top 30 abundant flora at the genus level.
DOI: 10.6084/m9.figshare.13152342
title: Additional file 14 of Potential role of intestinal microflora in disease progression among patients with different stages of Hepatitis B

description: Additional file 14: Table S11. Correlation of the predicted diverse functions and the Top 30 abundant flora at the genus level.
DOI: 10.6084/m9.figshare.13152366
title: Additional file 7 of Potential role of intestinal microflora in disease progression among patients with different stages of Hepatitis B

description: Additional file 7: Table S5. Top 30 abundant bacteria identified at the genus level for each group.
DOI: 10.6084/m9.figshare.13152232
title: Additional file 6 of Analysing the meta-interaction between pathways by gene set topological impact analysis

description: Additional file 6: Matrix Data 3. GESTIA score matrix for Fig. 3a. (XLS 1 kb)
DOI: 10.6084/m9.figshare.13152354
title: Additional file 3 of Potential role of intestinal microflora in disease progression among patients with different stages of Hepatitis B

description: Additional file 3: Table S3. Comparison results of α diversity for the cohort using the Kruskal–Wallis test.
DOI: 10.6084/m9.figshare.13152363
title: Additional file 6 of Potential role of intestinal microflora in disease progression among patients with different stages of Hepatitis B

description: Additional file 6: Table S4. Abundant bacteria identified at the level of phylum using 16S rRNA gene sequencing.
DOI: 10.6084/m9.figshare.13152232.v1
title: Additional file 6 of Analysing the meta-interaction between pathways by gene set topological impact analysis

description: Additional file 6: Matrix Data 3. GESTIA score matrix for Fig. 3a. (XLS 1 kb)
DOI: 10.6084/m9.figshare.13152354.v1
title: Additional file 3 of Potential role of intestinal microflora in disease progression among patients with different stages of Hepatitis B

description: Additional file 3: Table S3. Comparison results of α diversity for the cohort using the Kruskal–Wallis test.
DOI: 10.15156/bio/sh111765.07fu
title: SH111765.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh111766.07fu
title: SH111766.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh111767.07fu
title: SH111767.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh111768.07fu
title: SH111768.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh111769.07fu
title: SH111769.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh111770.07fu
title: SH111770.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh111771.07fu
title: SH111771.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.