cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3516446.v1
title: Appendix A. A figure illustrating the division of England and Wales into ten river basin districts.

description: A figure illustrating the division of England and Wales into ten river basin districts.
DOI: 10.6084/m9.figshare.3516443
title: Appendix B. Five tables presenting correlations and bootstrap confidence intervals for the relationships between terrestrial and freshwater ecosystem services.

description: Five tables presenting correlations and bootstrap confidence intervals for the relationships between terrestrial and freshwater ecosystem services.
DOI: 10.6084/m9.figshare.3516443.v1
title: Appendix B. Five tables presenting correlations and bootstrap confidence intervals for the relationships between terrestrial and freshwater ecosystem services.

description: Five tables presenting correlations and bootstrap confidence intervals for the relationships between terrestrial and freshwater ecosystem services.
DOI: 10.6084/m9.figshare.3516440
title: Appendix C. A figure illustrating correlations between the habitat modification index (HMI) and terrestrial ecosystem services, by River Basin District.

description: A figure illustrating correlations between the habitat modification index (HMI) and terrestrial ecosystem services, by River Basin District.
DOI: 10.6084/m9.figshare.3516440.v1
title: Appendix C. A figure illustrating correlations between the habitat modification index (HMI) and terrestrial ecosystem services, by River Basin District.

description: A figure illustrating correlations between the habitat modification index (HMI) and terrestrial ecosystem services, by River Basin District.
DOI: 10.6084/m9.figshare.3516437
title: Appendix A. Size-binned histograms of rainbow trout density and relative proportions in the Glen Canyon reach of the Colorado River, Arizona, USA on nine dates between June 2006 and April 2009.

description: Size-binned histograms of rainbow trout density and relative proportions in the Glen Canyon reach of the Colorado River, Arizona, USA on nine dates between June 2006 and April 2009.
DOI: 10.6084/m9.figshare.3516437.v1
title: Appendix A. Size-binned histograms of rainbow trout density and relative proportions in the Glen Canyon reach of the Colorado River, Arizona, USA on nine dates between June 2006 and April 2009.

description: Size-binned histograms of rainbow trout density and relative proportions in the Glen Canyon reach of the Colorado River, Arizona, USA on nine dates between June 2006 and April 2009.
DOI: 10.6084/m9.figshare.3516434
title: Appendix B. Mean organic matter flows (i.e., consumption) of invertebrate taxa to rainbow trout during the three years of study.

description: Mean organic matter flows (i.e., consumption) of invertebrate taxa to rainbow trout during the three years of study.
DOI: 10.6084/m9.figshare.3516434.v1
title: Appendix B. Mean organic matter flows (i.e., consumption) of invertebrate taxa to rainbow trout during the three years of study.

description: Mean organic matter flows (i.e., consumption) of invertebrate taxa to rainbow trout during the three years of study.
DOI: 10.6084/m9.figshare.3516431
title: Appendix C. Mean proportional contribution of different food resources to invertebrate and rainbow trout production during the three years of study.

description: Mean proportional contribution of different food resources to invertebrate and rainbow trout production during the three years of study.
DOI: 10.6084/m9.figshare.3516431.v1
title: Appendix C. Mean proportional contribution of different food resources to invertebrate and rainbow trout production during the three years of study.

description: Mean proportional contribution of different food resources to invertebrate and rainbow trout production during the three years of study.
DOI: 10.6084/m9.figshare.3516428
title: Supplement 1. Data from invertebrate foods webs in Glen Canyon, Colorado River, USA.

description: File List Abundance and biomass.csv<br> Flows to consumers.csv Description Abundance and biomass.csv contains monthly abundance (no./m<sup>2</sup> +1SD) and biomass (mg AFDM/m<sup>2</sup> +1SD) of invertebrate taxa. These data were collected from Glen Canyon between 2006 and 2009, are presented on both a habitat-specific and habitat-weighed basis. Checksum values are: column 2 – Ceratapogonidae #/m<sup>2</sup> – 2.94; column 6: New Zealand Mud Snails #/m<sup>2</sup> – 1573435.56; column 74: New Zealand Mud Snails mg AFDM/m<sup>2</sup> – 102828.33, 2 missing values; column 262 Acari mg AFDM/m<sup>2</sup> – 2.65, 2 missing values. Flows to consumers.csv contains annual estimates of organic matter flow (i.e., consumption; g AFDM m<sup>-2</sup> y<sup>-1</sup>) from basal resources to invertebrate consumers. These data represent annual mean (±bootstrapped 95% CI) flows based on combined gut content and secondary production data. Checksum values are: column 3: amorphous detritus – 279.570; column 12: amorphous detritus – 368.555; column 27: animal – 5.819.
DOI: 10.6084/m9.figshare.3516428.v1
title: Supplement 1. Data from invertebrate foods webs in Glen Canyon, Colorado River, USA.

description: File List Abundance and biomass.csv<br> Flows to consumers.csv Description Abundance and biomass.csv contains monthly abundance (no./m<sup>2</sup> +1SD) and biomass (mg AFDM/m<sup>2</sup> +1SD) of invertebrate taxa. These data were collected from Glen Canyon between 2006 and 2009, are presented on both a habitat-specific and habitat-weighed basis. Checksum values are: column 2 – Ceratapogonidae #/m<sup>2</sup> – 2.94; column 6: New Zealand Mud Snails #/m<sup>2</sup> – 1573435.56; column 74: New Zealand Mud Snails mg AFDM/m<sup>2</sup> – 102828.33, 2 missing values; column 262 Acari mg AFDM/m<sup>2</sup> – 2.65, 2 missing values. Flows to consumers.csv contains annual estimates of organic matter flow (i.e., consumption; g AFDM m<sup>-2</sup> y<sup>-1</sup>) from basal resources to invertebrate consumers. These data represent annual mean (±bootstrapped 95% CI) flows based on combined gut content and secondary production data. Checksum values are: column 3: amorphous detritus – 279.570; column 12: amorphous detritus – 368.555; column 27: animal – 5.819.
DOI: 10.6084/m9.figshare.3516425
title: Appendix A. Characterization of the restoration projects.

description: Characterization of the restoration projects.
DOI: 10.6084/m9.figshare.3516425.v1
title: Appendix A. Characterization of the restoration projects.

description: Characterization of the restoration projects.
DOI: 10.6084/m9.figshare.3516422
title: Appendix B. Diversity of mesohabitats and microhabitats at paired sites.

description: Diversity of mesohabitats and microhabitats at paired sites.
DOI: 10.6084/m9.figshare.3516422.v1
title: Appendix B. Diversity of mesohabitats and microhabitats at paired sites.

description: Diversity of mesohabitats and microhabitats at paired sites.
DOI: 10.6084/m9.figshare.3516419
title: Appendix A. A table containing NO3-N uptake rates in restored lowland streams calculated from N addition experiments conducted during average flow conditions.

description: A table containing NO3-N uptake rates in restored lowland streams calculated from N addition experiments conducted during average flow conditions.
DOI: 10.6084/m9.figshare.3516419.v1
title: Appendix A. A table containing NO3-N uptake rates in restored lowland streams calculated from N addition experiments conducted during average flow conditions.

description: A table containing NO3-N uptake rates in restored lowland streams calculated from N addition experiments conducted during average flow conditions.
DOI: 10.6084/m9.figshare.3516416
title: Appendix A. Chemical and physical characteristics for summer 2006 and winter 2007 sampling days.

description: Chemical and physical characteristics for summer 2006 and winter 2007 sampling days.
DOI: 10.6084/m9.figshare.3516416.v1
title: Appendix A. Chemical and physical characteristics for summer 2006 and winter 2007 sampling days.

description: Chemical and physical characteristics for summer 2006 and winter 2007 sampling days.
DOI: 10.6084/m9.figshare.3516413
title: Appendix B. Physical data for study sites collected during Summer 2006.

description: Physical data for study sites collected during Summer 2006.
DOI: 10.6084/m9.figshare.3516413.v1
title: Appendix B. Physical data for study sites collected during Summer 2006.

description: Physical data for study sites collected during Summer 2006.
DOI: 10.6084/m9.figshare.3516410
title: Appendix A. Location of each restoration project in Germany, including its position within the river network and the land use in the catchment draining to each restoration site.

description: Location of each restoration project in Germany, including its position within the river network and the land use in the catchment draining to each restoration site.
DOI: 10.6084/m9.figshare.3516410.v1
title: Appendix A. Location of each restoration project in Germany, including its position within the river network and the land use in the catchment draining to each restoration site.

description: Location of each restoration project in Germany, including its position within the river network and the land use in the catchment draining to each restoration site.
DOI: 10.6084/m9.figshare.3516407
title: Appendix B. Land use in the catchments of restored river sections.

description: Land use in the catchments of restored river sections.
DOI: 10.6084/m9.figshare.3516407.v1
title: Appendix B. Land use in the catchments of restored river sections.

description: Land use in the catchments of restored river sections.
DOI: 10.6084/m9.figshare.3516404
title: Appendix C. Abundances, number of taxa, and Shannon-Wiener diversity indices for restored and control sections.

description: Abundances, number of taxa, and Shannon-Wiener diversity indices for restored and control sections.
DOI: 10.6084/m9.figshare.3516404.v1
title: Appendix C. Abundances, number of taxa, and Shannon-Wiener diversity indices for restored and control sections.

description: Abundances, number of taxa, and Shannon-Wiener diversity indices for restored and control sections.
DOI: 10.6084/m9.figshare.3516401
title: Appendix A. Study site UTM coordinates.

description: Study site UTM coordinates.
DOI: 10.6084/m9.figshare.3516401.v1
title: Appendix A. Study site UTM coordinates.

description: Study site UTM coordinates.
DOI: 10.6084/m9.figshare.3516398
title: Appendix B. Example habitat transition maps and photos for study site block 1.

description: Example habitat transition maps and photos for study site block 1.
DOI: 10.6084/m9.figshare.3516398.v1
title: Appendix B. Example habitat transition maps and photos for study site block 1.

description: Example habitat transition maps and photos for study site block 1.
DOI: 10.6084/m9.figshare.3516395
title: Appendix C. Study site species lists.

description: Study site species lists.
DOI: 10.6084/m9.figshare.3516395.v1
title: Appendix C. Study site species lists.

description: Study site species lists.
DOI: 10.6084/m9.figshare.3516392
title: Appendix A. Keys for tree crown and forest floor fire-severity index classes.

description: Keys for tree crown and forest floor fire-severity index classes.
DOI: 10.6084/m9.figshare.3516392.v1
title: Appendix A. Keys for tree crown and forest floor fire-severity index classes.

description: Keys for tree crown and forest floor fire-severity index classes.
DOI: 10.6084/m9.figshare.3516389
title: Appendix A. Figures showing responses of Centaurea solstitialis establishment and height to environmental change treatments, and showing the effect of Crepis vesicaria abundance on CO2 responses of Centaurea.

description: Figures showing responses of Centaurea solstitialis establishment and height to environmental change treatments, and showing the effect of Crepis vesicaria abundance on CO2 responses of Centaurea.
DOI: 10.6084/m9.figshare.3516389.v1
title: Appendix A. Figures showing responses of Centaurea solstitialis establishment and height to environmental change treatments, and showing the effect of Crepis vesicaria abundance on CO2 responses of Centaurea.

description: Figures showing responses of Centaurea solstitialis establishment and height to environmental change treatments, and showing the effect of Crepis vesicaria abundance on CO2 responses of Centaurea.
DOI: 10.6084/m9.figshare.3516386
title: Appendix B. Tables showing P values from mixed-model analyses of treatment effects on Centaurea in the field experiment, and of treatment effects on Centaurea and Avena shoot biomass in the mesocosm experiment.

description: Tables showing P values from mixed-model analyses of treatment effects on Centaurea in the field experiment, and of treatment effects on Centaurea and Avena shoot biomass in the mesocosm experiment.
DOI: 10.6084/m9.figshare.3516386.v1
title: Appendix B. Tables showing P values from mixed-model analyses of treatment effects on Centaurea in the field experiment, and of treatment effects on Centaurea and Avena shoot biomass in the mesocosm experiment.

description: Tables showing P values from mixed-model analyses of treatment effects on Centaurea in the field experiment, and of treatment effects on Centaurea and Avena shoot biomass in the mesocosm experiment.
DOI: 10.6084/m9.figshare.3516383
title: Erratum. Corrected version of Fig. 2 (which originally appeared in Bogich and Shea, 2008, Ecological Applications 18:748–761).

description: Corrected version of Fig. 2 (which originally appeared in Bogich and Shea, 2008, Ecological Applications 18:748–761).
DOI: 10.6084/m9.figshare.3516383.v1
title: Erratum. Corrected version of Fig. 2 (which originally appeared in Bogich and Shea, 2008, Ecological Applications 18:748–761).

description: Corrected version of Fig. 2 (which originally appeared in Bogich and Shea, 2008, Ecological Applications 18:748–761).
DOI: 10.6084/m9.figshare.3516380
title: Appendix A. Characterization of patch-level covariates for avian landscapes in central Jamaica.

description: Characterization of patch-level covariates for avian landscapes in central Jamaica.
DOI: 10.6084/m9.figshare.3516380.v1
title: Appendix A. Characterization of patch-level covariates for avian landscapes in central Jamaica.

description: Characterization of patch-level covariates for avian landscapes in central Jamaica.
DOI: 10.6084/m9.figshare.3516377
title: Appendix B. Candidate model set.

description: Candidate model set.
DOI: 10.6084/m9.figshare.3516377.v1
title: Appendix B. Candidate model set.

description: Candidate model set.
DOI: 10.6084/m9.figshare.3516374
title: Appendix C. Model selection results.

description: Model selection results.
DOI: 10.6084/m9.figshare.3516374.v1
title: Appendix C. Model selection results.

description: Model selection results.
DOI: 10.6084/m9.figshare.3516371
title: Supplement 1. Parameter values and statistics for the full zero-inflated Poisson (ZIP) model, including latitude and longitude, for eight animal guilds.

description: File List ZIP_full_results.txt Description Parameter values and statistics for the full ZIP model, including latitude and longitude, for eight animal guilds. Guild is the animal guild, abbreviated as Ape (apes), Bird (insectivorous birds), Duik (duikers), Ele (elephant), Fbird (large frugivorous birds), Mky (monkeys), Pig (forest pigs), and Squ (squirrels). Effects of explanatory variables (in the Parameter column) are estimated for the two parts of the mixture model. Parameters with the prefix b0 are effects of the absence part of the ZIP model quantifying the probability of a structural zero: these effects are on the logit scale. Parameters with the prefix b are effects for the abundance part of the model: these effects are guild densities. Explanatory variables include: frt (fruit abundance); lat (latitude); long (longitude); pca1 (PCA axis 1 – number of trees); pca2 (PCA axis 2 – number of lianas); pca3 (PCA axis 3 – understory); pco (canopy heterogeneity); site (different forest types) where [1] = logged, hunted forest, [2] = logged, unhunted forest, [3] = unlogged, unhunted forest. The standard deviation of the month × species random effect is sigma.mo. From the estimated explanatory variables and the data, we calculated: post.p as the probability that the observations along a transect come from a Poisson distribution for each site; post.lambda as the predicted guild density generated from a Poisson distribution for each site; and post.abund as the mean guild density for each site. For each parameter value, we list the mean (Mean), standard deviation (SD), the Monte Carlo standard error of the mean (MC error), and the 2.5%, 50% (Median), and 97.5% quantiles for each parameter.
DOI: 10.6084/m9.figshare.3516368
title: Supplement 2. Parameter values and statistics for the disturbance ZIP models (excluding latitude and longitude) for eight animal guilds.

description: File List ZIP_dist_results.txt Description Parameter values and statistics for the disturbance ZIP models (excluding latitude and longitude) for eight animal guilds. Guild is the animal guild, abbreviated as Ape (apes), Bird (insectivorous birds), Duik (duikers), Ele (elephant), Fbird (large frugivorous birds), Mky (monkeys), Pig (forest pigs), and Squ (squirrels). Effects of explanatory variables (in the Parameter column) are estimated for the two parts of the mixture model. Parameters with the prefix b0 are effects of the absence part of the ZIP model quantifying the probability of a structural zero: these effects are on the logit scale. Parameters with the prefix b are effects for the abundance part of the model: these effects are guild densities. Explanatory variables include: frt (fruit abundance); pca1 (PCA axis 1 – number of trees); pca2 (PCA axis 2 – number of lianas); pca3 (PCA axis 3 – understory); pco (canopy heterogeneity); site (different forest types) where [1] = logged, hunted forest, [2] = logged, unhunted forest, [3] = unlogged, unhunted forest. The standard deviation of the month × species random effect is sigma.mo. From the estimated explanatory variables and the data, we calculated: post.p as the probability that the observations along a transect come from a Poisson distribution for each site; post.lambda as the predicted guild density generated from a Poisson distribution for each site; and post.abund as the mean guild density for each site. For each parameter value, we list the mean (Mean), standard deviation (SD), the Monte Carlo standard error of the mean (MC error), and the 2.5%, 50% (Median), and 97.5% quantiles for each parameter.
DOI: 10.6084/m9.figshare.3516368.v1
title: Supplement 2. Parameter values and statistics for the disturbance ZIP models (excluding latitude and longitude) for eight animal guilds.

description: File List ZIP_dist_results.txt Description Parameter values and statistics for the disturbance ZIP models (excluding latitude and longitude) for eight animal guilds. Guild is the animal guild, abbreviated as Ape (apes), Bird (insectivorous birds), Duik (duikers), Ele (elephant), Fbird (large frugivorous birds), Mky (monkeys), Pig (forest pigs), and Squ (squirrels). Effects of explanatory variables (in the Parameter column) are estimated for the two parts of the mixture model. Parameters with the prefix b0 are effects of the absence part of the ZIP model quantifying the probability of a structural zero: these effects are on the logit scale. Parameters with the prefix b are effects for the abundance part of the model: these effects are guild densities. Explanatory variables include: frt (fruit abundance); pca1 (PCA axis 1 – number of trees); pca2 (PCA axis 2 – number of lianas); pca3 (PCA axis 3 – understory); pco (canopy heterogeneity); site (different forest types) where [1] = logged, hunted forest, [2] = logged, unhunted forest, [3] = unlogged, unhunted forest. The standard deviation of the month × species random effect is sigma.mo. From the estimated explanatory variables and the data, we calculated: post.p as the probability that the observations along a transect come from a Poisson distribution for each site; post.lambda as the predicted guild density generated from a Poisson distribution for each site; and post.abund as the mean guild density for each site. For each parameter value, we list the mean (Mean), standard deviation (SD), the Monte Carlo standard error of the mean (MC error), and the 2.5%, 50% (Median), and 97.5% quantiles for each parameter.
DOI: 10.6084/m9.figshare.3516365
title: Supplement 3. WinBUGS code for fitting a ZIP mixture model to estimate densities of animal guilds.

description: File List WinBUGS_ZIP_mixture_model.txt Description The WinBUGS_ZIP_mixture_model.txt file is code for fitting a zero-inflated Poisson (ZIP) mixture model to observations of animals to model densities of animal guilds. The code models the probability that an observation of zero comes from a Poisson distribution or alternatively as a structural zero, and then calculates the density of animal guilds with month and species as random effects. Parameters with the prefix b0 are effects of the absence part of the ZIP model quantifying the probability of a structural zero on the logit scale. Parameters with the prefix b are effects for the abundance part of the model: these effects are guild densities. Explanatory variables include: frt (fruit abundance); pca1 (PCA axis 1 – number of trees); pca2 (PCA axis 2 – number of lianas); pca3 (PCA axis 3 – understory); pco (canopy heterogeneity); site (different forest types) where [1] = logged, hunted forest, [2] = logged, unhunted forest, [3] = unlogged, unhunted forest. The standard deviation of the month × species random effect is sigma.mo. From the estimated explanatory variables and the data, we calculated: post.p as the probability that the observations along a transect come from a Poisson distribution for each site; post.lambda as the predicted guild density generated from a Poisson distribution for each site; and post.abund as the mean guild density for each site.
DOI: 10.6084/m9.figshare.3516365.v1
title: Supplement 3. WinBUGS code for fitting a ZIP mixture model to estimate densities of animal guilds.

description: File List WinBUGS_ZIP_mixture_model.txt Description The WinBUGS_ZIP_mixture_model.txt file is code for fitting a zero-inflated Poisson (ZIP) mixture model to observations of animals to model densities of animal guilds. The code models the probability that an observation of zero comes from a Poisson distribution or alternatively as a structural zero, and then calculates the density of animal guilds with month and species as random effects. Parameters with the prefix b0 are effects of the absence part of the ZIP model quantifying the probability of a structural zero on the logit scale. Parameters with the prefix b are effects for the abundance part of the model: these effects are guild densities. Explanatory variables include: frt (fruit abundance); pca1 (PCA axis 1 – number of trees); pca2 (PCA axis 2 – number of lianas); pca3 (PCA axis 3 – understory); pco (canopy heterogeneity); site (different forest types) where [1] = logged, hunted forest, [2] = logged, unhunted forest, [3] = unlogged, unhunted forest. The standard deviation of the month × species random effect is sigma.mo. From the estimated explanatory variables and the data, we calculated: post.p as the probability that the observations along a transect come from a Poisson distribution for each site; post.lambda as the predicted guild density generated from a Poisson distribution for each site; and post.abund as the mean guild density for each site.
DOI: 10.6084/m9.figshare.3516362
title: Appendix A. Calculating the game encounter rate e from line-transect data.

description: Calculating the game encounter rate e from line-transect data.
DOI: 10.6084/m9.figshare.3516359
title: Appendix B. Equations for rmax(θ), rmin(θ), θmax, and θmin.

description: Equations for rmax(θ), rmin(θ), θmax, and θmin.
DOI: 10.6084/m9.figshare.3516353
title: Appendix C. Spreadsheet solver for the analytical solution.

description: Spreadsheet solver for the analytical solution.
DOI: 10.6084/m9.figshare.3516350
title: Appendix D. Matlab solver for the multiple-settlement analytical solution.

description: Matlab solver for the multiple-settlement analytical solution.