cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.yysunk
title: Occurrence Download

description: A dataset containing 952 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Vireo nanus (Lawrence, 1875)"
 ]
}

 The dataset includes 952 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052323-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aiabwn
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chelonoidis carbonaria Bour, 1980",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 59 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010166-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t6b5rx
title: Occurrence Download

description: A dataset containing 27108 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Museu Paraense Emílio Goeldi - Ophidia Collection"
 ]
}

 The dataset includes 27108 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075693-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmkcxr
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (MCP-Anfibios - Coleção de Anfíbios, The Herpetology Collection at the Staatliches Museum für Naturkunde Stuttgart, NMNH Extant Specimen Records (USNM, US), Museum of Comparative Zoology, Harvard University)",
 "GadmGid is BRA.21_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhinella icterica (Spix, 1824)",
 "Year 1000-2020"
 ]
}

 The dataset includes 67 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074628-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.444jbv
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Distimake repens (D.F.Austin & Staples) Petrongari & Sim.-Bianch."
 ]
}

 The dataset includes 11 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158259-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpnjuu
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Country is Nepal",
 "HasCoordinate is true",
 "TaxonKey is Yuhina nigrimenta Blyth, 1845",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010166-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nbypqc
title: Occurrence Download

description: A dataset containing 1903 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Aleadryas rufinucha (P.L.Sclater, 1874)"
 ]
}

 The dataset includes 1903 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052324-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0cptbf
title: Occurrence Download

description: A dataset containing 554 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lonicera splendida Boiss."
 ]
}

 The dataset includes 554 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012458-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vw97uz
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Verbesina lundellii S.F.Blake"
 ]
}

 The dataset includes 8 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028312-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xghbmj
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erigeron wislizeni (A.Gray) Greene"
 ]
}

 The dataset includes 216 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158260-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8046693
title: Dataset related to article "A novel organotypic cortical slice culture model for traumatic brain injury: molecular changes induced by injury and mesenchymal stromal cell secretome treatment"

description: Dataset related to manuscript "A novel organotypic cortical slice culture model for traumatic brain injury: molecular changes induced by injury and mesenchymal stromal cell secretome treatment" Each excel file contains raw data relative to data shown in Figures
DOI: 10.5281/zenodo.8046692
title: Dataset related to article "A novel organotypic cortical slice culture model for traumatic brain injury: molecular changes induced by injury and mesenchymal stromal cell secretome treatment"

description: Dataset related to manuscript "A novel organotypic cortical slice culture model for traumatic brain injury: molecular changes induced by injury and mesenchymal stromal cell secretome treatment" Each excel file contains raw data relative to data shown in Figures
DOI: 10.5281/zenodo.7637599
title: Data for Simulating the seeder-feeder impacts on cloud ice and precipitation over the Alps

description: The ice phase impacts many important cloud properties and the lifetime of the clouds. Ice particles that sediment into a lower cloud from an upper cloud (external seeder-feeder process) or into the mixed-phase region of a deep cloud from cirrus levels (internal seeder-feeder) can amplify cloud glaciation and enhance surface precipitation. Recently, numerical weather prediction modeling studies have aimed at representing the ice crystal number concentration in mixed-phase clouds more accurately by including secondary ice formation processes. The increase in the ice crystal number concentration can impact the number of ice particles that sediment into the lower cloud and alter its composition and precipitation formation. <br> In the Swiss Alps, the orography permits the formation of orographic clouds, making it ideal for studying the occurrence of multi-layered clouds and the seeder-feeder process. We present results from a case study on May 18, 2016, showing the occurrence frequency of multi-layered clouds and the seeder-feeder process. We included ice-graupel breakup to enhance the ice crystal number concentration and investigate the precipitation formation processes.<br> 47.6\% of all observed clouds were categorized as multi-layered, in which the external seeder-feeder process occurred in 10.3\% of these clouds which is similar to what was found in several studies. In between cloud layers, 58.4\% of the ice particle mass was lost due to sublimation or melting. The external seeder-feeder process was found to be more important, with regard to the impact on precipitation, than the internal seeder-feeder process in this case study. In the case where the external seeder-feeder process was blocked, the average surface precipitation and riming rate over the domain were both reduced by 8.5\% and 3.9\%, respectively. When ice-graupel collisions were allowed, further large reductions were seen in the liquid water fraction and riming rate. Blocking of the internal seeder-feeder process enhanced the liquid water fraction of 6\% compared to a reduction of 5.8\% in the cloud condensate and, therefore, pointing towards the deamplification in cloud glaciation and a reduction in surface precipitation.
DOI: 10.5281/zenodo.7637600
title: Data for Simulating the seeder-feeder impacts on cloud ice and precipitation over the Alps

description: The ice phase impacts many important cloud properties and the lifetime of the clouds. Ice particles that sediment into a lower cloud from an upper cloud (external seeder-feeder process) or into the mixed-phase region of a deep cloud from cirrus levels (internal seeder-feeder) can amplify cloud glaciation and enhance surface precipitation. Recently, numerical weather prediction modeling studies have aimed at representing the ice crystal number concentration in mixed-phase clouds more accurately by including secondary ice formation processes. The increase in the ice crystal number concentration can impact the number of ice particles that sediment into the lower cloud and alter its composition and precipitation formation. <br> In the Swiss Alps, the orography permits the formation of orographic clouds, making it ideal for studying the occurrence of multi-layered clouds and the seeder-feeder process. We present results from a case study on May 18, 2016, showing the occurrence frequency of multi-layered clouds and the seeder-feeder process. We included ice-graupel breakup to enhance the ice crystal number concentration and investigate the precipitation formation processes.<br> 47.6\% of all observed clouds were categorized as multi-layered, in which the external seeder-feeder process occurred in 10.3\% of these clouds which is similar to what was found in several studies. In between cloud layers, 58.4\% of the ice particle mass was lost due to sublimation or melting. The external seeder-feeder process was found to be more important, with regard to the impact on precipitation, than the internal seeder-feeder process in this case study. In the case where the external seeder-feeder process was blocked, the average surface precipitation and riming rate over the domain were both reduced by 8.5\% and 3.9\%, respectively. When ice-graupel collisions were allowed, further large reductions were seen in the liquid water fraction and riming rate. Blocking of the internal seeder-feeder process enhanced the liquid water fraction of 6\% compared to a reduction of 5.8\% in the cloud condensate and, therefore, pointing towards the deamplification in cloud glaciation and a reduction in surface precipitation.
DOI: 10.5281/zenodo.8033669
title: Chikungunya intra-vector infection dynamics in a French Aedes albopictus population reveals low vector barrier intensity and supports an explosive epidemic potential

description: Arbovirus emergence and epidemic potential, as approximated by the vectorial capacity formula, depends on host and vector parameters, including the vector’s intrinsic ability to replicate then transmit the pathogen known as vector competence. Vector competence is a complex, time-dependent, quantitative phenotype influenced by biotic and abiotic factors. A combination of experimental and modelling approaches is required to assess arbovirus intra-vector dynamics and estimate its epidemic potential. In this study, we measured infection, dissemination, and transmission dynamics of chikungunya virus (CHIKV) in a field-derived <em>Aedes albopictus</em> population (Lyon metropolis, France) after oral exposure to a range of virus doses spanning human viraemia. Statistical modelling indicates rapid and efficient CHIKV progression in the vector mainly due to an absence of a dissemination barrier, with 100% of the infected mosquitoes ultimately exhibiting a disseminated infection, regardless of the virus dose. Transmission rate data revealed a time-dependent, but overall weak, transmission barrier, with individuals transmitting as soon as 2 days post-exposure (dpe) and &gt;50% infectious mosquitoes at 6 dpe for the highest dose. Based on these experimental intra-vector dynamics data, epidemiological simulations conducted with an agent-based model showed that even at low mosquito biting rates, CHIKV could trigger explosive outbreaks. Together, this reveals the high epidemic potential of CHIKV upon transmission by <em>Aedes albopictus</em> in mainland France.
DOI: 10.5281/zenodo.8033668
title: Chikungunya intra-vector infection dynamics in a French Aedes albopictus population reveals low vector barrier intensity and supports an explosive epidemic potential

description: Arbovirus emergence and epidemic potential, as approximated by the vectorial capacity formula, depends on host and vector parameters, including the vector’s intrinsic ability to replicate then transmit the pathogen known as vector competence. Vector competence is a complex, time-dependent, quantitative phenotype influenced by biotic and abiotic factors. A combination of experimental and modelling approaches is required to assess arbovirus intra-vector dynamics and estimate its epidemic potential. In this study, we measured infection, dissemination, and transmission dynamics of chikungunya virus (CHIKV) in a field-derived <em>Aedes albopictus</em> population (Lyon metropolis, France) after oral exposure to a range of virus doses spanning human viraemia. Statistical modelling indicates rapid and efficient CHIKV progression in the vector mainly due to an absence of a dissemination barrier, with 100% of the infected mosquitoes ultimately exhibiting a disseminated infection, regardless of the virus dose. Transmission rate data revealed a time-dependent, but overall weak, transmission barrier, with individuals transmitting as soon as 2 days post-exposure (dpe) and &gt;50% infectious mosquitoes at 6 dpe for the highest dose. Based on these experimental intra-vector dynamics data, epidemiological simulations conducted with an agent-based model showed that even at low mosquito biting rates, CHIKV could trigger explosive outbreaks. Together, this reveals the high epidemic potential of CHIKV upon transmission by <em>Aedes albopictus</em> in mainland France.
DOI: 10.5281/zenodo.8046733
title: Digital Directory of Irish Publishers

description: First deliverable of the NORF-funded project, PublishOA.ie, to evaluate the feasibility of establishing a Diamond Open Access publishing platform in Ireland. Created from existing lists and desk research, then followed up by contacting publishers in Ireland to verify details, this <em>Directory</em> lists book and journal publishers on the island of Ireland and should prove a useful resource for authors, publishers, funders, researchers, etc. This version is in Excel format.
DOI: 10.5281/zenodo.8046732
title: Digital Directory of Irish Publishers

description: First deliverable of the NORF-funded project, PublishOA.ie, to evaluate the feasibility of establishing a Diamond Open Access publishing platform in Ireland. Created from existing lists and desk research, then followed up by contacting publishers in Ireland to verify details, this <em>Directory</em> lists book and journal publishers on the island of Ireland and should prove a useful resource for authors, publishers, funders, researchers, etc. This version is in Excel format.
DOI: 10.5517/ccdc.csd.cc281ty3
title: CCDC 2087135: Experimental Crystal Structure Determination

description: Related Article: Mingchun Gao, Jose M. Ruiz, Emily Jimenez, Anna Lo, Croix J. Laconsay, James C. Fettinger, Dean J. Tantillo, Jared T. Shaw|2023|Chemical Science|14|6443|doi:10.1039/D3SC00734K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2823zg
title: CCDC 2087415: Experimental Crystal Structure Determination

description: Related Article: Mingchun Gao, Jose M. Ruiz, Emily Jimenez, Anna Lo, Croix J. Laconsay, James C. Fettinger, Dean J. Tantillo, Jared T. Shaw|2023|Chemical Science|14|6443|doi:10.1039/D3SC00734K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28n49d
title: CCDC 2104723: Experimental Crystal Structure Determination

description: Related Article: Siji Xu, Gui Xiong, Xiang-Yu Zhang, Kun Huang, Da-Bin Qin, Bin Zhao|2023|Cryst.Growth Des.|23|4214|doi:10.1021/acs.cgd.3c00028
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cb4nj
title: CCDC 2184497: Experimental Crystal Structure Determination

description: Related Article: Shakuntala K, Naveen S, Lokanath NK, Suchetan PA|2018|Der Pharma Chemica: J. Med. Chem. Pharm. Chem. Comput. Chem|10|67|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cb4pk
title: CCDC 2184498: Experimental Crystal Structure Determination

description: Related Article: Shakuntala K, Naveen S, Lokanath NK, Suchetan PA|2018|Der Pharma Chemica: J. Med. Chem. Pharm. Chem. Comput. Chem|10|67|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fvqpq
title: CCDC 2260014: Experimental Crystal Structure Determination

description: Related Article: Guanghui Lv, Qingyao Zhang, Cuimei Zhang, Yuting Chen, Zheng Lin, Ruizhi Lai, Zhongzhen Yang, Yong Wu|2023|Org.Lett.|25|4022|doi:10.1021/acs.orglett.3c01102
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.8046762
title: Analyzing mutant density as a complementary metric to cyclomatic complexity for finding refactoring opportunities dataset

description: Dataset used for analysis in the work: Analyzing mutant density as a complementary metric to cyclomatic complexity for finding refactoring opportunities dataset
DOI: 10.5281/zenodo.8046761
title: Analyzing mutant density as a complementary metric to cyclomatic complexity for finding refactoring opportunities dataset

description: Dataset used for analysis in the work: Analyzing mutant density as a complementary metric to cyclomatic complexity for finding refactoring opportunities dataset
DOI: 10.5281/zenodo.8045588
title: MMIFR: Multimodal Industry Focused Data Repository

description: The MMIFR data repository consists of three distinct components: MMIFR-D, MMIFR-FS, and MMIFR-P. The MMIFR-D dataset comprises a comprehensive assemblage of 5907 images accompanied by corresponding textual descriptions, notably facilitating the application of industrial equipment classification. In contrast, the MMIFR-FS dataset serves as an alternative variant characterized by the inclusion of 129 distinct classes and 5907 images, specifically catering to the task of few-shot learning within the industrial domain. Additionally, the MMIFR-P dataset consists of 142 textual-visual information pairs, making it suitable for detecting pairs of industrial equipment.
DOI: 10.5281/zenodo.8045587
title: MMIFR: Multimodal Industry Focused Data Repository

description: The MMIFR data repository consists of three distinct components: MMIFR-D, MMIFR-FS, and MMIFR-P. The MMIFR-D dataset comprises a comprehensive assemblage of 5907 images accompanied by corresponding textual descriptions, notably facilitating the application of industrial equipment classification. In contrast, the MMIFR-FS dataset serves as an alternative variant characterized by the inclusion of 129 distinct classes and 5907 images, specifically catering to the task of few-shot learning within the industrial domain. Additionally, the MMIFR-P dataset consists of 142 textual-visual information pairs, making it suitable for detecting pairs of industrial equipment.
DOI: 10.5281/zenodo.7107695
title: Data files for manuscript "Re-evaluation and Re-analysis of 152 research exomes five years after the initial report reveals clinically relevant changes in 20%"

description: #2022-09-231<br> #Summary<br> This ZIP-file contains the data files used for all analyses for the manuscript "Re-evaluation and Re-analysis of 152 research exomes five years after the initial report reveals clinically relevant changes in 20%". <br> #File structure<br> README.txt This README file.<br> File S02 ("FileS2_conNDD-cohort.xlsx") All variants identified by Reuter et al. previously with reevaluated variants and addition variants identified in this <br> project togetehr with information about the families, individuals, samplesand the BAM files assessed in this project.<br> File S03 ("FileS3_conNDD-variants.xlsx") All variant data analyzed from the cohort. Including a sheet with thresholdes for in silico predictions tools used to predict effect of variants, <br> a table with exome wide homozygous variants in 4 categories (A45, LGD, Missense, Splice), a table with exome wide variants in 4 categories (A45, LGD, Missense, Splice)<br> filtered for domiant genes associated with neurodevelopmental disorders in SysID (Prime and Candidate list), a table with exome wide variants in 4 categories (A45, LGD, Missense, Splice) filtered for recessive genes associated with neurodevelopmental disorders in SysID (Prime and Candidate list), a table withcopy number (CN) calls for the cohort and a table withcalls for runs of homozygosity (RoH) regions. #Files and checksums<br> 732145e9e7bb3547595da122ed4eb539 ./FileS2_conNDD-cohort.xlsx<br> a054334637b8b22a9bf743db1e348663 ./FileS3_conNDD-variants.xlsx<br>