cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15188016.v2
title: Dataset of RNAseq, TCR and ctDNA

description: This dataset includes gene expression matrix by TPM normalization, TCR clonality and ctDNA mTBI.
DOI: 10.6084/m9.figshare.1579166.v1
title: Uptake of SmartFlare (Spherical Nucleic Acids) in HeLa cells: Transmission Electron Microscopy results

description: This data set is part of an open science project which aims at elucidating the fate and reliability of SmartFlares. CELL CULTURE AND LABELLING HeLa cells were seeded at 500,000 cells per well of a 35mm polystyrene dish.The Cy3-VEGF SmartFlare was reconstituted into 1 mL of nuclease free water. 20 μL of the Cy3-VEGF SmartFlare was added to 980 μL MEM medium, which also contains Fetal Bovine Serum (FBS), non-essential amino acids and 1% penicillin and streptomycin.Existing medium was removed from the settled cells and a 2 mL PBS wash was carried out twice. Once all PBS was removed 1 mL of the SmartFlare/medium mixture was added to the cells. The cells were then placed back into a 37°C, 5% CO2 incubator for 18 hours. CELL FIXATION AND PROCESSING After 18h incubation, cells were fixed with a solution containing 1% paraformaldehyde and 3% gluteraldehyde in 0.1 M cacodylate buffer (pH 7.4). They were stained first with reduced osmium (2% OsO4 + 1.5% K4[Fe(CN)6]). This was followed by a 2nd osmium staining (2% OsO4) and a uranyl acetate (1%) staining. Samples were then dehydrated in graded ethanol (30%, 50%, 70%, 90% and 2x 100%). Finally, samples were infiltrated with medium TAAB resin 812 and embedded with the same resin. The resin was cured for 48h at 60°C. Ultrathin sections of 350μm x 350μm x 74 nm were cut and placed in 200 mesh Formvar/Carbon filmed grids. They were post-stained with uranyl acetate and lead citrate before TEM imaging. IMAGING Cells were imaged on an Tecnai G3 spirit. Cells were imaged first at low magnification (~2900x) and also at higher (~6800x) magnification in the same area.
DOI: 10.6084/m9.figshare.16689487.v1
title: rumen16s

description: dairy cow rumen microbiome 16S amplicon DNA sequences, fasta file of OTU sequences. <br> From Dietary wheat and reduced methane yield are linked to rumen microbiome changes in dairy cows. Savin et al, PloS One 2022
DOI: 10.17632/6bgpx9nsm9
title: Data for: Comparison of Clustering Algorithms applied to Fluid Characterization using NMR T1-T2 Maps of Shale
DOI: 10.17632/br83vbh2rp
title: UX Journey Initial Perceptions

description: A UX journey case study involves a comprehensive analysis of the user experience for a specific product or service. The case study would likely include a description of the problem or opportunity that the product/service is intended to address, the target user group, and the context in which the product/service is used.

The case study would also include a detailed description of the design process, including user research, prototyping, testing, and iteration. This would involve identifying user needs and preferences, creating wireframes and mockups, and conducting user testing to refine the design.
DOI: 10.6084/m9.figshare.1439770.v1
title: New York City Dataset

description: Dataset of Yelp tags and keywords for New York City
DOI: 10.6084/m9.figshare.24037434.v1
title: Dataset: Integrasi UTAUT2, TPB, dan IS Success model: ChatGPT dalam pendidikan

description: Dataset pada faktor-faktor yang menjelaskan niat, perilaku penggunaan, kepuasaan dan manfaat penggunaan ChatGPT selama pembelajaran, di perguruan tinggi di Indonesia. Model diusulkan dalam penelitian dapat memberikan gambaran yang komprehensif tentang ChatGPT dalam pembelejaran dimana model yang valid dan reliabel bisa dijadikan panduan bagi peneliti-peneliti di masa yang akan datang yang tertarik untuk melakukan penelitian dengan topik dan pendekatan yang sama.
DOI: 10.6084/m9.figshare.25894675.v1
title: Germline missense MUTYH Pathogenic variants

description: Molecular dynamics simulation of the pathogenic variants based on the ClinVar, COSMIC, and various in silico methods, the simulation is up to 100 ns.
DOI: 10.6084/m9.figshare.6652310.v1
title: Supplementary Material for: <b><i>Uncaria rhynchophylla</i></b> Ameliorates Parkinson’s Disease by Inhibiting HSP90 Expression: Insights from Quantitative Proteomics

description: <b><i>Background/Aims:</i></b> <i>Uncaria rhynchophylla</i>, known as “Gou-teng”, is a traditional Chinese medicine (TCM) used to extinguish wind, clear heat, arrest convulsions, and pacify the liver. Although <i>U. rhynchophylla</i> has a long history of being often used to treat central nervous system (CNS) diseases, its efficacy and potential mechanism are still uncertain. This study investigated neuroprotective effect and the underlying mechanism of <i>U. rhynchophylla</i> extract (URE) in MPP<sup>+</sup>-induced SH-SY5Y cells and MPTP-induced mice. <b><i>Methods:</i></b> MPP<sup>+</sup>-induced SH-SY5Y cells and MPTP-induced mice were used to established Parkinson’s disease (PD) models. Quantitative proteomics and bioinformatics were used to uncover proteomics changes of URE. Western blotting was used to validate main differentially expressed proteins and test HSP90 client proteins (apoptosis-related, autophagy-related, MAPKs, PI3K, and AKT proteins). Flow cytometry and JC-1 staining assay were further used to confirm the effect of URE on MPP<sup>+</sup>-induced apoptosis in SH-SY5Y cells. Gait analysis was used to detect the behavioral changes in MPTP-induced mice. The levels of dopamine (DA) and their metabolites were examined in striatum (STR) by HPLC-EC. The positive expression of tyrosine hydroxylase (TH) was detected by immunohischemical staining and Western blotting. <b><i>Results:</i></b> URE dose-dependently increased the cell viability in MPP<sup>+</sup>-induced SH-SY5Y cells. Quantitative proteomics and bioinformatics results confirmed that HSP90 was an important differentially expressed protein of URE. URE inhibited the expression of HSP90, which further reversed MPP<sup>+</sup>-induced cell apoptosis and autophagy by increasing the expressions of Bcl-2, Cyclin D1, p-ERK, p-PI3K p85, PI3K p110α, p-AKT, and LC3-I and decreasing cleaved caspase 3, Bax, p-JNK, p-p38, and LC3-II. URE also markedly decreased the apoptotic ratio and elevated mitochondrial transmembrane potential (DΨ<sub>m</sub>). Furthermore, URE treatment ameliorated behavioral impairments, increased the contents of DA and its metabolites and elevated the positive expressions of TH in SN and STR as well as the TH protein. <b><i>Conclusions:</i></b> URE possessed the neuroprotective effect <i>in vivo</i> and <i>in vitro</i>, regulated MAPK and PI3K-AKT signal pathways, and inhibited the expression of HSP90. <i>U. rhynchophylla</i> has potentials as therapeutic agent in PD treatment.
DOI: 10.17632/zfcv9fmrgv
title: Blackgram Plant Leaf Disease Dataset

description: The Dataset is having five categories of 1000 images (Four most common leaf diseases of Blackgram crop such are Anthracnose, Leaf Crinkle, Powdery Mildew, Yellow Mosaic &  healthy category). The dataset is collected from the cultivation fields at Nagayalanka, Krishna (d.t), Andhra Pradesh, India.  The aim of collecting the dataset is to design an automated blackgram plant leaf disease identification and classification systems based on Computer Vision algorithms.
DOI: 10.6084/m9.figshare.28921280.v2
title: Unequal Breath

description: A zine about air, technology, and justice.
DOI: 10.6084/m9.figshare.c.3581339_d4.v1
title: Upregulated Genes after VEGFC156S stimulation

description: List of genes corresponding to the upregulated CAGE peaks (p &lt; 0.05, log2FC&gt;0.6) for each time point
DOI: 10.17632/fb9sn2zcx8
title: Data of pressure and temperature during the 2018 Boso SSE

description: This dataset includes pressure and temperature data of ocean bottom pressure gauges. From 2016-08-28 to 2018-09-21, sampling interval: 1 hour
DOI: 10.17632/nc8gmyz7kw
title: Enhancing Creativity in Education through AI and VR Integration

description: This study delves into the effects of AI and VR on creativity within global educational systems from 2007 to 2023
DOI: 10.6084/m9.figshare.154688.v6
title: Gas hydrate deposits: a primer

description: THE .pdf ISN'T DISPLAYING ON FIGSHARE'S PREVIEW FOR REASONS UNKNOWN. TRYING TO FIX... This graphic is a draft from an educational course I'm compiling about the Earth's natural gas reserves. It attempts to summarise what gas hydrates are and where they can be found, adn accompanies further graphics that explain the chemistry of hydrates. No attempt is made to quantify the amount of methane that might be present in these deposits globally - this is the subject of much uncertainty. Those interested in the details of resource size can refer to the sources listed in the graphic and GEA (2012). <em>Global Energy Assessment - Toward a Sustainable Future</em>. Cambridge University Press. I hope some will find this useful. Any comments, corrections and queries welcome.
DOI: 10.6084/m9.figshare.29153477.v1
title: Data for meta-analytical review (Minorities in the Indian news A meta-analytical review of Muslims, Christians, and Dalits).xlsx

description: Contains data from a systematic review on studies concerning the portrayal of minorities in the Indian news
DOI: 10.17632/gvrycbk9kv
title: DATA AND QUESTIONNAIRE (MALAY & ENGLISH VERSION)

description: Data about the socioeconomic demographic of 200 families living in high-risk drug environments located in East Coast states of Peninsular Malaysia – survey questionnaire through face-to-face interviews in April 2021
DOI: 10.17632/v9s7jtxhdr
title: Financial Socialization to Financial Well-Being

description: The methodology used is based on a quantitative, non-experimental, cross-sectional and correlational research study. To carry out the analysis, information provided by the National Survey on Financial Health (ENSAFI for its Spanish acronym), conducted in 2023 by the National Institute of Statistics and Geography (INEGI in Spanish) in collaboration with the National Commission for the Protection and Defense of Users of Financial Services (CONDUSEF in Spanish), was used. The unit of analysis was composed of individuals over 18 years of age, distributed throughout the country. In total, 20,448 people participated in the study.
DOI: 10.6084/m9.figshare.11967729.v1
title: OTU's table

description: OTU’s table after QIIME processing
DOI: 10.17632/k3h6g875dt
title: Improving lithium dose prediction using population pharmacokinetics and pharmacogenomics: a cohort genome-wide association study in Sweden

description: Summary statistics from the article "Improving lithium dose prediction using population pharmacokinetics and pharmacogenomics: a cohort genome-wide association study in Sweden", https://doi.org/10.1016/S2215-0366(22)00100-6
DOI: 10.6084/m9.figshare.21078148.v1
title: List of bird species in the breeding season of 2020 in the Zhoushan Archipelago, China

description: List of bird species in the breeding season of 2020 in the Zhoushan Archipelago, China Duorun Wang<sup>1, #</sup>, Yuhao Zhao<sup>1, #</sup>, Shupei Tang<sup>1</sup>, Xiangxu Liu<sup>1</sup>, Wande Li<sup>1</sup>, Peng Han<sup>1</sup>, Di Zeng<sup>1</sup>, Yangheshan Yang<sup>1</sup>, Guangpeng Wei<sup>1</sup>, Yi Kang<sup>1</sup>, Xingfeng Si<sup>1</sup>* <sup>1</sup> Institute of Eco-Chongming (IEC), Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China; <sup>#</sup> These authors contributed equally to this work and should be considered co-first authors; * Corresponding author: Xingfeng Si: sixf@des.ecnu.edu.cn <br> We surveyed bird assemblages on study islands in Zhoushan Archipelago in the breeding season of 2020 (from April to June). We setup transects on each island to cover various habitat types for birds except highly urbanized regions (<em>i.e.</em>, cities and towns). For the largest island (Island 1: Zhoushan Island), we set eight transects. For the rest of study islands, we set one, two, or four transects that the number of transects was based on the area and land-use types of study islands. We used Global Positioning System (GPS) to record the position and the length of each transect. The transect length is 2 km on most study islands. However, the transect length is restricted to 1 km for several small islands, as the steep terrain (<em>e.g.</em>, cliffs near the edges) does not allow us to set a 2-km transect. For bird surveys, at least two well-trained surveyors walked at a constant speed (<em>ca</em>. 1.5 km/h) along transects and recorded the identities and abundances of all birds heard and seen. Bird surveys were conducted two hours after sunrise and one hours before sunset, and the overall surveying time was restricted to two hours in each survey. We only conducted bird surveys on days with good weather conditions, excluding heavy raining or strong windy days. All transects were surveyed twice which is the maximum survey effort we can afford due to the large region of the Zhoushan Archipelago, the limited transportations in this region and the relatively short period of the breeding season. Surveyors walked the transects in a random order by inversing the starting point to avoid survey biases.
DOI: 10.6084/m9.figshare.9724691.v1
title: data for 'coevolution of snake venom toxic activities and diet'

description: Dataset and phylogeny used for analysis in the paper entitled "Coevolution of snake venom toxic activities and diet: ecological generalism favours toxicological diversity" by Davies and Arbuckle
DOI: 10.60893/figshare.jcp.28278863.v1
title: supplemental

description: Hardware and Software descriptions. Source data for plots
DOI: 10.17632/5hnj458w4z
title: Anhysteretic magnetization and magnetostriction data under biaxial stress

description: Anhysteretic data: 
- 25 biaxial stress states: (\sigma_1, \sigma_2) indicated in each file name for parallel (para) magnetostriction (measured along the magnetization axis)
- 25 biaxial stress states: (\sigma_1, \sigma_2) indicated in each file name for perpendicular (perp) magnetostriction (measured perpendicularly to the magnetization axis)

3 columns are corresponding to:

1-Magnetic field (A/m)
2-Magnetization (A/m)
3-magnetostriction (mm/mm)
DOI: 10.17632/7v2vcc9v28
title: Evoked intracranial potentials in patients with epilepsy

description: The parameters affecting the evoked response in the brain as a result of brain stimulation is not well understood. Yet it is widely used in research and clinical settings (e.g. responsive neurostimulation to treat intractable multifocal epilepsy in humans). In an effort to better understand the parameters that affect the response to brain stimulation, single pulse electrical stimulation was delivered to different brain regions of patients with epilepsy undergoing long term monitoring. These data were recorded off depth and surface cortical electrodes. These are the summarized trial data derived from patients. 11 patients are included in this data set. The data are organized into a MATLAB variable type table and saved in .mat form. These data were recorded, epoched, filtered, and processed as described in the submitted manuscript "A systematic exploration of parameters affecting evoked intracranial potentials in patients with epilepsy" by authors Bornali Kundu, Tyler S. Davis, Brian Philip, Elliot H. Smith, Amir Arain, Angela Peters, Blake Newman, Christopher R. Butson and John D. Rolston. The columns of the table consistent of the following variables: (1) patientnum - the patient ID number (2) stimlevel - the stimulation level delivered, in microvolts (3) stimchan - the number ID of the stimulation channel (4) respchan - the number ID of the response channel from which the evoked response was measured (5) isdpth - 1 = the channel was from a depth electrode, 0 = the channel was from a cortical surface electrode (6) distance - distance between the stimulation channel and response channel in Euclidian space, in mm (7) issozstim - 1= the stimulation channel was located in the clinical SOZ, boolean variable (8) issozrep - 1= the response channel was located in the clinical SOZ, boolean variable (9) posthgpwr100 - raw trial power after bandpass filtering the epoched data from 70-150Hz, calculating the Hilbert transform of the data, and then calculating the mean from 5 - 100ms as described in the methods section, data are log transformed (10) postrawmav100 - raw voltage data mean from 5-100 ms for the trial, in milivolts, data are log transformed (11) trials - trial number ID (12) regionstim - the region of the stimulation channel determined from an atlas as described in the methods (13) regionresp - the region of the response channel determined from an atlas as described in the methods (14) issoz - boolean variable, true corresponds to if the stimulation channel, response channel, or both were in the clinical SOZ (15) regionresptype - categorical description of the region of the response channel (16) regionstimtype - categorical description of the region of the stimulation channel Funding: JDR is supported by the NIH, NCATS KL2 TR002539and NINDS R21 NS113031. BK is supported in part by a NREF neurosurgical research grant.
DOI: 10.17632/fddmktxsd9
title: CEEMDANT

description: CEEMDANLT is an optimized vision of iceemdan
This code is developed based on the code of iceemdan.
The file of iceemdan is available at http://www.bioingenieria.edu.ar/grupos/ldnlys/
Colominas MA, Schlotthauer G, Torres ME. "Improve complete ensemble EMD: A suitable tool for biomedical signal processing" Biomedical Signal Processing and Control vol. 14 pp. 19-29 (2014)
DOI: 10.6084/m9.figshare.20045705.v2
title: Dataset of N2 fixation and contrilling factors in the East China Sea and southern Yellow Sea in July and August 2013.xlsx

description: The file contains N2 fixation rate, temperature, salinity, turbidity, nutrients, Chla, Trichodesmium, and Richelia/Calothrix in ECS and SYS during summer 2013, new production in ECS during summer 2011, and nitrate and runoff fluxes of Changjiang recorded at Datong station during summer 2017-2019.
DOI: 10.6084/m9.figshare.22849910.v1
title: Dental Panoramic Scan (Part2)

description: For More Information Check Part1 of Data Link To Part1:https://figshare.com/articles/dataset/Dental_Panoramic_Scan/22580263 <br> <strong>Introduction</strong> The dataset consists of 379 orthopantomogram (OPG) images collected from a dental clinic in India. The images were taken using a digital OPG machine, which captures a panoramic view of the patient's teeth and jaws. The dataset does not contain any personal information about the patients, as it has been deleted for privacy reasons. Additionally, the data does not have any labels or annotations.
DOI: 10.6084/m9.figshare.29053316.v1
title: Processed Intensity Images for Figure 3 – Poincaré Beams from a Free Electron Laser

description: Normalized beam intensity profiles recorded before and after a linear polarizer at selected phase delays (used in Figure 3).
DOI: 10.6084/m9.figshare.6236921.v1
title: DataSets - Identification and characterization of Facebook user profiles considering interaction aspects

description: Dataset used in Article "Identification and characterization of Facebook user profiles considering interaction aspects"
DOI: 10.6084/m9.figshare.6263435.v1
title: Staphylococcus aureus viewed from the perspective of 40,000+ genomes

description: This file is in association with the non-redundant diversity (NRD) set of genomes. <br>Files included are:<br>1) Information on the 380 sample set2) Information on the 878 gene set3) Assembled genomes for each genome (FASTA)4) Concatenated gene sequences (FASTA, PHYLIP)
DOI: 10.17632/76msnn2tz8
title: TMA-Mate: An open-source modular toolkit for constructing tissue microarrays of arbitrary layouts 

description: Biomedical research and quality control procedures often demand a variety of microscopic analysis of numerous formalin-fixed and paraffin-embedded (FFPE) tissue samples from different individuals of both healthy and diseased regions of interest. Depending on the number of samples to be analyzed, conventional processing of each FFPE block separately can be laborious or impracticable. This effort can be drastically reduced by using tissue microarrays (TMAs). TMAs have a wide range of applications and can be considered as a high-throughput method to process up to hundreds of miniaturized tissue samples simultaneously on a single microscopy slide, in order to reduce labor, costs and sample consumption, and to increase results comparability. Several commercial and self-made solutions to fabricate TMAs with varying degrees of automation are available. However, these solutions may not be suitable for every situation, either due to high costs, high complexity, lack of precision or lack of flexibility, especially when diagnostically oriented pathology institutes or laboratories with constrained resources are considered. This article introduces the TMA-Mate, an open-source 3D printable modular toolkit for constructing high-density TMAs of arbitrary layouts, providing an affordable, lightweight, and accessible procedure to implement TMAs into existing histology processing pipelines. Step-by-step demonstration for replicating the Hardware and constructing TMAs are included.

Files description:

* The folder 'TMA_Mate_FCStd' contains the CAD model as a sigle 'FCStd' file created with the standart unmodified distribution of FreeCAD (version 0.20.1, revision number 29410/Git).

* The folder 'TMA_Mate_STL' contains Stereolithography files (.stl) for each individual part of the TMA-Mate and the accessories, created with the standart unmodified distribution of FreeCAD (version 0.20.1, revision number 29410/Git). Compressed archive files (.zip) within this folder contain variants of the indicated 3D printed parts. The stereolithography files for modular parts cannot be offered in all possible variations and are limited to a reasonable selection. The Rack (file 9. R_Rack.zip) is the only part that requires print supports and is therefore provided with and without print supports.
DOI: 10.17632/nzmccn9gfk
title: Cotton Crop plant leaves Data set for Disease Classification

description: This Data is about Cotton Crop Leaves data used for the Deep Learning Model training to predict Crop yield and Disease. Three types of disease are classified into
DOI: 10.17632/w3g3v35vxb
title: Supplementary Data for "Hormonal Intrauterine Devices Are Associated With Lower Long-Term Melasma Risk Compared to Combined and Progestin-Only Oral Contraceptives: a Population-Based Cohort Study."

description: Supplementary Data
DOI: 10.6084/m9.figshare.14489568.v1
title: Biomass burning tracers in the TP

description: Biomass burning tracers in the TP, including Ngari, Beiluhe,and Qinghai Lake
DOI: 10.6084/m9.figshare.27942279.v1
title: Database of the Flora of Anguilla

description: This database represents a snapshot of the flora of Anguilla, including all documented native, nonnative (including invasive), and cryptogenic plant species. At this time, there are 617 plant taxa documented, of which 553 are confirmed and 64 unconfirmed.Recommended citation: Hochart, J., Buckmire, Z. & Tye, A. 2024. <i>Database of the Flora of Anguilla.</i><i> </i>Anguilla Department of Natural Resources and Anguilla National Trust, The Valley. doi.org/10.6084/m9.figshare.27942279.<br>
DOI: 10.6084/m9.figshare.6953390.v1
title: Adiposity genetic risk score modifies the association between blood lead level and body mass index

description: The full list of each SNP was shown in <b>Supplemental Table 1</b>. The interactions of single SNP and BLL on abnormal weight status were measured (<b>Supplemental Table 2</b>). In this study, we found the GRS was associated with lipid profile and hypertension (<b>Supplemental Table 3</b>).
DOI: 10.17632/7v2c74vvtc
title: H3K79me2 ChIP-seq

description: ChIP-seq data of H3K79me2 in Uveal melanoma cells