cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/5mngvhfd5c.1
title: PROSAIL5B-DR

description: The PROSAIL5B-DR model is an extended version of the PROSAIL5B canopy radiative transfer model, designed to simulate the effects of dust retention on vegetation spectral reflectance. This Matlab code enables users to model the optical impact of dust accumulation on leaves and its influence on canopy-level reflectance. It supports research in remote sensing, urban vegetation monitoring, and spectral analysis under dust pollution scenarios.
DOI: 10.25925/20250301
title: Multi-laboratory compilation of atmospheric sulfur hexafluoride data for the period 1983-2024; obspack_sf6_1_v3.0_2025-03-13

description: This product is constructed using the Observation Package (ObsPack) framework [Masarie et al., 2014; www.earth-syst-sci-data.net/6/375/2014/]. The framework is designed to bring together atmospheric greenhouse gas (GHG) observations from a variety of sampling platforms, prepare them with specific applications in mind, and package and distribute them in a self-consistent and well-documented product. ObsPack products are intended to support GHG budget studies and represent a new generation of cooperative value-added GHG data products. This product includes 218 atmospheric sulfur hexafluoride datasets derived from observations made by 16 laboratories. Data for the period 1983-2024 (where available) are included.
DOI: 10.17632/9m2sgtsgw7.1
title: Accomodating Statistical and Physics-based Computational Protocals for Molecular Glue Design and Evaluation

description: Molecular glues (MGs) offer a promising strategy for modulating protein-protein interactions (PPIs) by inducing novel intermolecular contacts or stabilizing existing ones. However, the rational design of MGs is hampered by the challenge of predicting the structural arrangement of the ternary complex (MG-protein1-protein2). Here, we present a computational methodology for constructing ternary complexes of MGs, circumventing the need for experimentally determined structures. Recognizing the diverse mechanisms of MG action, we employ two distinct computational approaches tailored to specific MG systems. We validate our methodology through case studies of known MGs, demonstrating its ability to capture the fundamental principles governing MG activity. Our findings highlight the potential of integrating statistical and physics-based methods for the discovery and development of novel MGs.
DOI: 10.17632/9m2sgtsgw7.2
title: Accomodating Statistical and Physics-based Computational Protocals for Molecular Glue Design and Evaluation

description: Molecular glues (MGs) offer a promising strategy for modulating protein-protein interactions (PPIs) by inducing novel intermolecular contacts or stabilizing existing ones. However, the rational design of MGs is hampered by the challenge of predicting the structural arrangement of the ternary complex (MG-protein1-protein2). Here, we present a computational methodology for constructing ternary complexes of MGs, circumventing the need for experimentally determined structures. Recognizing the diverse mechanisms of MG action, we employ two distinct computational approaches tailored to specific MG systems. We validate our methodology through case studies of known MGs, demonstrating its ability to capture the fundamental principles governing MG activity. Our findings highlight the potential of integrating statistical and physics-based methods for the discovery and development of novel MGs.
DOI: 10.17632/9c6y3d7jdw.1
title: figshare

description: The figure of "Research on the vortex states of partially coherent vortex beams"
DOI: 10.15468/dl.297n2c
title: Occurrence Download

description: A dataset containing 1348 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Mexico, United States of America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Centruroides sculpturatus Ewing, 1928"
 ]
}

 The dataset includes 1348 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007616-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/6xbdr4f9nn.1
title: Cross-Organ Hierarchy of HLA Molecular Mismatches in Donor-Specific Antibody Development in Solid Organ Transplantations

description: This repository contains a comprehensive collection of R scripts, data files, results, and additional resources used in a research project examining the associations between eplet mismatches and the development of de novo donor-specific antibodies (DSA) in various transplant cohorts. 

This dataset is associated with the study ‘Cross-Organ Hierarchy of HLA Molecular Mismatches in Donor-Specific Antibody Development in Solid Organ Transplantations’ by M. Hirata, K. Tsukita, T. Shindo, et al.

To easily calculate the Eplet Risk Score (ERS) using our web-based application, please visit: https://erscalculator.shinyapps.io/ers_application_deploy/.
DOI: 10.17632/6m32bh6rjt.1
title: Phosphorus Homeostasis

description: I stage in 657 premature infants of 26-36+6 weeks GA from September 1, 2021 to August 31, 2022, detected sP, sCa and ALP concentrations from birth(at around half an hour of life), weekly to hospital discharge and analysed the variation trends with postnatal ages and the high-risk factors for MBDP.
II stage in continuous 63 preterm infants from June 1, 2023 to June 30, 2023.correlations with sP, uP, sCa, uCa and phosphotropic hormones such as PTHrP, iPTH, 1,25(OH)2D and FGF23 during fetal and early life were explored in continuous 63 preterm infants.
DOI: 10.15468/dl.743dr4
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Premnobius ambitiosus Wood & Bright, 1992",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 59 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007620-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/5rhkjgy792.1
title: Klebsiella pneumoniae induced ferroptosis by inhibition of the Nrf2/xCT/GPX4 pathway in bovine mammary epithelial cells

description: Klebsiella pneumoniae (K. pneumoniae), a prominent causative agent of mastitis in dairy cattle, remains enigmatic in its pathogenic mechanisms. This study aimed to reveal the effects of K. pneumoniae on mammary glands via the induction of ferroptosis, as well as the protective role of Ferrostatin-1 (Fer-1) against this pathogen-mediated damage in bovine mammary epithelial cells (BMECs). Holstein cows were used to establish an intramammary infection model of K. pneumoniae. In vitro, primary BMECs were treated with 10 μM Fer-1 and K. pneumoniae alone or in combination. The results showed that mammary glands infected with K. pneumoniae exhibited increases in interleukin (IL) -1B, IL-6, IL-8, and tumor necrosis factor-α (TNFA), along with significantly increased iron, 4-hydroxynonenal, and reactive oxygen species (ROS) levels. Conversely, nuclear factor erythroid 2-related factor 2 (Nrf2), cystine/glutamate antiporter (xCT), glutathione peroxidase 4 (GPX4), and glutathione levels were downregulated following K. pneumoniae infection. Following the invasion of K. pneumoniae, intracellular iron and lipid ROS accumulated in the BMECs, which also impeded the activation of Nrf2/xCT/GPX4 signal transduction. Additionally, Fer-1 facilitated the nuclear migration of Nrf2, leading to the upregulation of the Nrf2/xCT/GPX4 pathway and downregulation IL-1B, IL-6, IL-8, and TNFA. In conclusion, the findings revealed the ability of Fer-1 to alleviate K. pneumoniae-induced inflammatory factor activation and ferroptosis in BMECs via upregulation of the Nrf2/xCT/GPX4 pathway, indicating that inhibition of ferroptosis holds promise as a feasible therapeutic agent for the control of mastitis.
DOI: 10.17632/5rhkjgy792.2
title: Klebsiella pneumoniae induced ferroptosis by inhibition of the Nrf2/xCT/GPX4 pathway in bovine mammary epithelial cells

description: Klebsiella pneumoniae (K. pneumoniae), a prominent causative agent of mastitis in dairy cattle, remains enigmatic in its pathogenic mechanisms. This study aimed to reveal the effects of K. pneumoniae on mammary glands via the induction of ferroptosis, as well as the protective role of Ferrostatin-1 (Fer-1) against this pathogen-mediated damage in bovine mammary epithelial cells (BMECs). Holstein cows were used to establish an intramammary infection model of K. pneumoniae. In vitro, primary BMECs were treated with 10 μM Fer-1 and K. pneumoniae alone or in combination. The results showed that mammary glands infected with K. pneumoniae exhibited increases in interleukin (IL) -1B, IL-6, IL-8, and tumor necrosis factor-α (TNFA), along with significantly increased iron, 4-hydroxynonenal, and reactive oxygen species (ROS) levels. Conversely, nuclear factor erythroid 2-related factor 2 (Nrf2), cystine/glutamate antiporter (xCT), glutathione peroxidase 4 (GPX4), and glutathione levels were downregulated following K. pneumoniae infection. Following the invasion of K. pneumoniae, intracellular iron and lipid ROS accumulated in the BMECs, which also impeded the activation of Nrf2/xCT/GPX4 signal transduction. Additionally, Fer-1 facilitated the nuclear migration of Nrf2, leading to the upregulation of the Nrf2/xCT/GPX4 pathway and downregulation IL-1B, IL-6, IL-8, and TNFA. In conclusion, the findings revealed the ability of Fer-1 to alleviate K. pneumoniae-induced inflammatory factor activation and ferroptosis in BMECs via upregulation of the Nrf2/xCT/GPX4 pathway, indicating that inhibition of ferroptosis holds promise as a feasible therapeutic agent for the control of mastitis.
DOI: 10.17632/5rhkjgy792.3
title: Klebsiella pneumoniae induced ferroptosis by inhibition of the Nrf2/xCT/GPX4 pathway in bovine mammary epithelial cells

description: Klebsiella pneumoniae (K. pneumoniae), a prominent causative agent of mastitis in dairy cattle, remains enigmatic in its pathogenic mechanisms. This study aimed to reveal the effects of K. pneumoniae on mammary glands via the induction of ferroptosis, as well as the protective role of Ferrostatin-1 (Fer-1) against this pathogen-mediated damage in bovine mammary epithelial cells (BMECs). Holstein cows were used to establish an intramammary infection model of K. pneumoniae. In vitro, primary BMECs were treated with 10 μM Fer-1 and K. pneumoniae alone or in combination. The results showed that mammary glands infected with K. pneumoniae exhibited increases in interleukin (IL) -1B, IL-6, IL-8, and tumor necrosis factor-α (TNFA), along with significantly increased iron, 4-hydroxynonenal, and reactive oxygen species (ROS) levels. Conversely, nuclear factor erythroid 2-related factor 2 (Nrf2), cystine/glutamate antiporter (xCT), glutathione peroxidase 4 (GPX4), and glutathione levels were downregulated following K. pneumoniae infection. Following the invasion of K. pneumoniae, intracellular iron and lipid ROS accumulated in the BMECs, which also impeded the activation of Nrf2/xCT/GPX4 signal transduction. Additionally, Fer-1 facilitated the nuclear migration of Nrf2, leading to the upregulation of the Nrf2/xCT/GPX4 pathway and downregulation IL-1B, IL-6, IL-8, and TNFA. In conclusion, the findings revealed the ability of Fer-1 to alleviate K. pneumoniae-induced inflammatory factor activation and ferroptosis in BMECs via upregulation of the Nrf2/xCT/GPX4 pathway, indicating that inhibition of ferroptosis holds promise as a feasible therapeutic agent for the control of mastitis.
DOI: 10.17632/nzwvnrmwp3.1
title: Human Faces and Objects Mix Image Dataset

description: Dataset Description: Human Faces and Objects Dataset (HFO-5000)
The Human Faces and Objects Dataset (HFO-5000) is a curated collection of 5,000 images, categorized into three distinct classes: male faces (1,500), female faces (1,500), and objects (2,000). This dataset is designed for machine learning and computer vision applications, including image classification, face detection, and object recognition. The dataset provides high-quality, labeled images with a structured CSV file for seamless integration into deep learning pipelines.


Column Description:
The dataset is accompanied by a CSV file that contains essential metadata for each image. The CSV file includes the following columns:
file_name: The name of the image file (e.g., image_001.jpg).
label: The category of the image, with three possible values:
"male" (for male face images)
"female" (for female face images)
"object" (for images of various objects)
file_path: The full or relative path to the image file within the dataset directory.


Uniqueness and Key Features:
1) Balanced Distribution: The dataset maintains an even distribution of human faces (male and female) to minimize bias in classification tasks.
2) Diverse Object Selection: The object category consists of a wide variety of items, ensuring robustness in distinguishing between human and non-human entities.
3) High-Quality Images: The dataset consists of clear and well-defined images, suitable for both training and testing AI models.
4) Structured Annotations: The CSV file simplifies dataset management and integration into machine learning workflows.
5) Potential Use Cases: This dataset can be used for tasks such as gender classification, facial recognition benchmarking, human-object differentiation, and transfer learning applications.


Conclusion:
The HFO-5000 dataset provides a well-structured, diverse, and high-quality set of labeled images that can be used for various computer vision tasks. Its balanced distribution of human faces and objects ensures fairness in training AI models, making it a valuable resource for researchers and developers. By offering structured metadata and a wide range of images, this dataset facilitates advancements in deep learning applications related to facial recognition and object classification.
DOI: 10.15468/dl.3mcdf2
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plectrohyla hartwegi Duellman, 1968"
 ]
}

 The dataset includes 178 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007619-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15021932
title: Dataset and Reproducible Code Package: Retrospective analysis of antimicrobial susceptibility testing illustrates the problem of resistant Staphylococcus species in cats

description: De-identified data and reproducible code to replicate the analysis in the manuscript "Retrospective analysis of antimicrobial susceptibility testing illustrates the problem of resistant Staphylococcus species in cats."
DOI: 10.5281/zenodo.15021933
title: Dataset and Reproducible Code Package: Retrospective analysis of antimicrobial susceptibility testing illustrates the problem of resistant Staphylococcus species in cats

description: De-identified data and reproducible code to replicate the analysis in the manuscript "Retrospective analysis of antimicrobial susceptibility testing illustrates the problem of resistant Staphylococcus species in cats."
DOI: 10.15468/dl.k4yb74
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is one of (Tropicos MO Specimen Data, Atlas Guatemalteco de Parientes Silvestres de las Plantas Cultivadas, Digitalización y Sistematización de las Colecciones Biológicas Nacionales del Instituto de Biología, UNAM (Plantas vasculares), Botanical Research Institute of Texas, Philecology Herbarium, NMNH Extant Specimen Records (USNM, US), Plant Resources Center, Bioversity Collecting Mission Database, Phanerogamic Botanical Collections (S), iNaturalist Research-grade Observations, Royal Botanic Gardens, Kew - Herbarium Specimens)",
 "Geometry POLYGON((-89.66077 17.3445,-89.64764 17.00299,-89.22876 16.99443,-89.21387 17.34528,-89.66077 17.3445))",
 "OccurrenceStatus is Present",
 "TaxonKey is Manilkara zapota (L.) P.Royen"
 ]
}

 The dataset includes 37 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007625-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/265cf556nr.1
title: Replication Files for Baumgärtner, Zahner (2025)

description: Replication Files for 

------------------------------------------------------------------------------------------------------------------------------
------- Whatever it takes to understand a central banker - Embedding their words using neural networks. -----------
------------------------------------------------------------------------------------------------------------------------------

-------------------------------------------
Contents and Replication Instructions

This repository contains the replication code and dataset for the study. The current version reflects the code and data as of March 13, 2025. We maintain an updated GitHub repository at the following link, where we implement improvements, fix potential issues, and address code optimizations:

https://github.com/martinbaumgaertner/whatever_it_takes

This replication package includes: (i) detailed ReadMe file with clear, step-by-step instructions for replication. (ii) a mapping of scripts to outputs, specifying which scripts generate each figure and table in the paper. (iii) All necessary datasets and source code to fully replicate the analysis, including embedding generation, model training, and final application.


---------------------------------------------------
Code Annotations and System Requirements

The code includes extensive comments for ease of understanding, along with specific guidance and alternative approaches for users without access to high-performance computing (HPC) resources. The replication process has been successfully executed on modern hardware (e.g., a recent MacBook Pro) within approximately a few dozen hours. However, users with less powerful systems may encounter performance limitations. To address this, we have explicitly annotated hardware-related constraints in the code and provided shortcuts, such as the use of pre-trained models, to facilitate replication. Some larger shortcuts (e.g., those used in Section 3.3 for measuring “rhetorical stability”) are not included in this replication package due to file size constraints (several GBs). However, these files are available upon request—please feel free to contact us if needed.
DOI: 10.34943/52309493-6474-4f1e-8429-ffe2ff141d19
title: Conception Bay Acoustic Doppler Current Profiler 400 kHz Deployed 2022-08-21

description: The Nortek AWAC AST 400 kHz WAV 7749 was deployed on 2022-08-21 at Conception Bay. Conception Bay is located west of the city St. John's, Newfoundland. This device is a Acoustic Doppler Current Profiler 400 kHz. Acoustic Doppler Current Profilers are hydroacoustic instruments, similar to sonars. ADCPs measure current speed and direction at multiple predetermined depths simultaneously. ADCPs use the Doppler effect of sound waves that are scattered by particles in seawater over a depth range. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.17632/p3gmf5cspr.1
title: Cobalt in feed - Research data

description: 110 samples of complementary feed were collected in different Italian regions and analysed between 2018 and 2022. Samples were n = 37 complementary feeds for dairy cows, n = 27 complementary feed for bulls/steers, n = 26 complementary feed for calves and n = 20 complementary feed for which no specific category of cattle for which they are intended is indicated (hereinafter referred to as “cattle”).
The mean values for the different feed types were cattle – 0.26 mg kg-1, bulls/steers – 0.40 mg kg-1, dairy cows – 0.27 mg kg-1 and calves – 0.25 mg kg-1.
The analysis of cobalt levels in ruminant feed revealed significant differences in supplementation in the examined animal categories. Bulls and steers feed exhibited the highest cobalt levels, with some samples elevated concentrations (up to 1.7 mg kg-1) compared to other categories (for which the highest concentration was 0.9 mg kg-1). Conversely, dairy cows displayed more homogeneous and generally lower cobalt levels, suggesting greater uniformity in the feed intended for this category. 
The feed intended for bulls may contain higher levels of cobalt, compared to other feeds, to ensure adequate amounts of cobalt to prevent consequences associated with cobalt or vitamin B12 deficiency.
DOI: 10.17632/p3gmf5cspr.2
title: Cobalt in feed - Research data

description: 110 samples of complementary feed were collected in different Italian regions and analysed between 2018 and 2022. Samples were n = 37 complementary feeds for dairy cows, n = 27 complementary feed for bulls/steers, n = 26 complementary feed for calves and n = 20 complementary feed for which no specific category of cattle for which they are intended is indicated (hereinafter referred to as “cattle”).
The mean values for the different feed types were cattle – 0.26 mg kg-1, bulls/steers – 0.40 mg kg-1, dairy cows – 0.27 mg kg-1 and calves – 0.25 mg kg-1.
The analysis of cobalt levels in ruminant feed revealed significant differences in supplementation in the examined animal categories. Bulls and steers feed exhibited the highest cobalt levels, with some samples elevated concentrations (up to 1.7 mg kg-1) compared to other categories (for which the highest concentration was 0.9 mg kg-1). Conversely, dairy cows displayed more homogeneous and generally lower cobalt levels, suggesting greater uniformity in the feed intended for this category. 
The feed intended for bulls may contain higher levels of cobalt, compared to other feeds, to ensure adequate amounts of cobalt to prevent consequences associated with cobalt or vitamin B12 deficiency.
DOI: 10.15468/dl.85x5cj
title: Occurrence Download

description: A dataset containing 467 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plectrohyla ixil Stuart, 1942"
 ]
}

 The dataset includes 467 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007626-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.