cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14139713.v1
title: <i>In silico</i> identification of epitope-based vaccine candidates against HTLV-1

description: Human T cell leukemia virus type-1 (HTLV-1) is the cause of adult T cell leukemia/lymphoma (ATL), uveitis, and certain pulmonary diseases. In recent decades, many scientists have proposed the development of different treatment and prevention strategies to combat HTLV-1 infection. In this study, we used bioinformatics tools to predict peptide and protein vaccine candidates against HTLV-1 that can potentially induce antibody production and both CD4+ and CD8+ T cell immune responses. Five critical proteins, viz., <i>Hbz, Tax, Pol, Gag</i>, and <i>Env, were</i> analyzed for predicting immunogenic T and B cell epitopes and subsequently evaluated using bioinformatics tools. Based on the predictions, the most antigenic epitopes were selected, and their interaction with immune receptors was investigated. We also designed a protein vaccine candidate with an eight-epitopes-rich domain, including <b>overlapping epitopes detected on both B and T cells.</b> Then, the interaction of the epitope and the designed protein with immune receptors was validated in an <i>in silico</i> docking study. The docking analysis showed that the O2 epitope and D8 protein interact strongly with immune receptors, especially the HLA-A*02:01 receptor. The stability of the interactions was investigated by molecular dynamics (MD) for 100 ns. The root mean square deviation, radius of gyration, hydrogen bonds, and solvent-accessible surface area were calculated for the 100 ns trajectory period. MD studies demonstrated that the O2–HLA-A*02:01 and D8–HLA-A*02:01 complexes were stable during the simulation. Analysis of <i>in silico</i> results showed that the peptide and the designed protein could elicit humoral and cell-mediated immune responses. Communicated by Ramaswamy H. Sarma
DOI: 10.5281/zenodo.4571571
title: DT-SLIM Results

description: Datasets detailing the results of the different experiments described in the paper "<strong>SAT-based Decision Tree Learning for Large Data Sets"</strong>
DOI: 10.5281/zenodo.4571570
title: DT-SLIM Results

description: Datasets detailing the results of the different experiments described in the paper "<strong>SAT-based Decision Tree Learning for Large Data Sets"</strong>
DOI: 10.5445/ir/1000099352
title: Methoden, Materialien und Ergebnisse der Entwicklung funktionaler Druckprozesse. Zusätzliche Daten zur Dissertation "Neue Methodik zur Optimierung von Druckverfahren für die Herstellung funktionaler Mikrostrukturen und hybrider elektronischer Schaltungen"
DOI: 10.6084/m9.figshare.14135786.v1
title: Seale-Carlisle et al. (2019) JARMAC dataset

description: Dataset for Seale-Carlisle, T. M., Colloff, M. F., Flowe, H. D., Wells, W., Wixted, J. T., & Mickes, L. (2019). Confidence and response time as indicators of eyewitness identification accuracy in the lab and in the real world. <i>Journal of Research in Memory and Cognition,</i><i> 8, 420-428</i><i>.</i><i></i>
DOI: 10.6084/m9.figshare.14135786
title: Seale-Carlisle et al. (2019) JARMAC dataset

description: Dataset for Seale-Carlisle, T. M., Colloff, M. F., Flowe, H. D., Wells, W., Wixted, J. T., & Mickes, L. (2019). Confidence and response time as indicators of eyewitness identification accuracy in the lab and in the real world. <i>Journal of Research in Memory and Cognition,</i><i> 8, 420-428</i><i>.</i><i></i>
DOI: 10.6084/m9.figshare.14139734
title: Covid cases

description: Dataset used from the COVID 19-European-Regional-Tracker (v1.3). The full dataset and documentation can be found on Zenodo and Github. <br>Zenodo: https://doi.org/10.5281/zenodo.4540656Github: https://github.com/asjadnaqvi/COVID19-European-Regional-Tracker
DOI: 10.6084/m9.figshare.14139734.v1
title: Covid cases

description: Dataset used from the COVID 19-European-Regional-Tracker (v1.3). The full dataset and documentation can be found on Zenodo and Github. <br>Zenodo: https://doi.org/10.5281/zenodo.4540656Github: https://github.com/asjadnaqvi/COVID19-European-Regional-Tracker
DOI: 10.6084/m9.figshare.14139725
title: eurostat

description: Data from Eurostat
DOI: 10.6084/m9.figshare.14139725.v1
title: eurostat

description: Data from Eurostat
DOI: 10.6084/m9.figshare.14139731
title: regression_data

description: Regression data
DOI: 10.6084/m9.figshare.14135546
title: holidays

description: File including the week number for the 2020 half-term school holiday.
DOI: 10.6084/m9.figshare.14135546.v1
title: holidays

description: File including the week number for the 2020 half-term school holiday.
DOI: 10.6084/m9.figshare.14135537
title: germany

description: COVID-19 case numbers for Germany.
DOI: 10.6084/m9.figshare.14135537.v1
title: germany

description: COVID-19 case numbers for Germany.
DOI: 10.5517/ccdc.csd.cc23rdr1
title: CCDC 1958913: Experimental Crystal Structure Determination

description: Related Article: Zhaobin Wang, Ze-Peng Yang, Gregory C. Fu|2021|Nature Chemistry|13|236|doi:10.1038/s41557-020-00609-7
DOI: 10.5517/ccdc.csd.cc245tjp
title: CCDC 1971802: Experimental Crystal Structure Determination

description: Related Article: Srikrishna Bera, Runze Mao, Xile Hu|2020|Nature Chemistry|13|270|doi:10.1038/s41557-020-00576-z
DOI: 10.5517/ccdc.csd.cc23rdq0
title: CCDC 1958912: Experimental Crystal Structure Determination

description: Related Article: Zhaobin Wang, Ze-Peng Yang, Gregory C. Fu|2021|Nature Chemistry|13|236|doi:10.1038/s41557-020-00609-7
DOI: 10.5517/ccdc.csd.cc23ywts
title: CCDC 1965146: Experimental Crystal Structure Determination

description: Related Article: Zhaobin Wang, Ze-Peng Yang, Gregory C. Fu|2021|Nature Chemistry|13|236|doi:10.1038/s41557-020-00609-7
DOI: 10.5517/ccdc.csd.cc25j9vw
title: CCDC 2011678: Experimental Crystal Structure Determination

description: Related Article: Srikrishna Bera, Runze Mao, Xile Hu|2020|Nature Chemistry|13|270|doi:10.1038/s41557-020-00576-z
DOI: 10.25385/zuyd.7857200.v3
title: Interprofessioneel Opleiden en Samenwerken (IPOS)

description: Om onze toekomstige zorgprofessionals optimaal te laten functioneren in een sterk veranderende gezondheidszorg, is het noodzakelijk om hen hierop voor te bereiden. Daarom is interprofessioneel opleiden broodnodig. Zorgprofessionals moeten goed in staat zijn om adequaat met elkaar samen te werken in dienst van een optimale zorgverlening voor de cliënt. De cliënt met zijn of haar hulpvraag dient in het zorgproces centraal te staan en niet de professional. Daarom gaat de faculteit Gezondheidszorg, in samenwerking met het Lectoraat Autonomie en Participatie van chronisch zieken, de uitdaging aan om al haar studenten interprofessioneel op te leiden. Het gaat om de bachelor opleidingen ergotherapie, fysiotherapie, logopedie, creatieve therapie, verpleegkunde, verloskunde en biometrie. Ook is samenwerking gezocht met andere faculteiten zoals Social Studies. Naast hun opleidingsspecifieke competenties verwerven de Zuyd-studenten ook interprofessionele competenties. Bij interprofessioneel opleiden leren (toekomstige) professionals over, van en met elkaar. De Wereld Gezondheidsorganisatie (2010) definieert dit als volgt: ‘Interprofessional education occurs when two or more professionals learn about, from, and with each other to enable collaboration and improve health outcomes.’
DOI: 10.25385/zuyd.7857251.v3
title: Interprofessional Education and Collaboration (IPE/C)

description: Our future health professionals need to function in a changing healthcare environment. We consider it as necessary to prepare them to handle the challenges they encounter adequately. One solution is interprofessional education and collaboration. Healthcare professionals need to be able to collaborate interprofessionally to provide optimal care to patients and families. The patient and his or her need for help and support should be central in the caring process and not professionals. This is the reason why the Faculty of Health at Zuyd University of Applied Sciences, in collaboration with the research centre Autonomy and participation of chronically ill people together take on the challenge to educate students interprofessionally. The following bachelor programmes participate in IPE/C: occupational therapy, physical therapy, speech and language therapy, arts therapy, nursing, midwifery and biomedical sciences. Also, we seek collaboration with other faculties, such as Social Work. Next to their profession-specific competencies we train our students in interprofessional competencies. IPE/C is directed that students from different educational programmes learning about, from and with each other. The World Health Organisations (2010) defines IPE/C as: ‘Interprofessional education occurs when two or more professionals learn about, from, and with each other to enable collaboration and improve health outcomes.’
DOI: 10.5281/zenodo.3911061
title: Global Visa Cost Dataset

description: The <strong>Global Visa Cost Dataset</strong> reports the cost of country-to-country visas for tourism, student, business, work, transit, family reunification and other motives worldwide. Data come from governmental websites and refer to costs in 2019 (in US dollars).
description: Part of the Global Mobilities Project at the EUI's Migration Policy Centre. See: https://migrationpolicycentre.eu/projects/global-mobilities-project
description: {"references": ["Recchi, E., Deutschmann, E., Gabrielli, L., Kholmatova, N. 2020. Assessing visa costs on a global scale. EUI RSCAS Working Paper 2020/18"]}
DOI: 10.6084/m9.figshare.12197928
title: Software Engineering Applications enabled by Blockchain Technology: A Systematic Mapping Study

description: The novel, yet disruptive blockchain technology has witnessed growing attention, due to its intrinsic potential. Besides the conventional domains that benefit from such a potential, such as finance, supply chain and healthcare, blockchain use cases in software engineering have emerged recently. This study aims to contribute to the body of knowledge of blockchain-oriented software engineering. Based on a systematic mapping study, we provide a quantitative and qualitative overview of the software engineering applications enabled by blockchain technology. We identified 22 primary studies and extracted data within the research type, research topic and contribution type facets. Findings suggest an increasing trend of studies since 2018. Additionally, findings reveal the potential of using blockchain technologies as an alternative to centralized systems, such as GitHub, Travis CI, and cloud-based package managers, and to establish trust between parties in collaborative software development. We also found out that smart contracts can enable the automation of a variety of software engineering activities that usually require human reasoning, such as the acceptance phase, payments to software engineers, and compliance adherence. In spite of the fact that the field is not yet mature, we believe that this study provides a holistic overview that may benefit researchers interested in bringing blockchain to the software industry; and practitioners willing to understand how blockchain could transform the software development industry.
DOI: 10.6084/m9.figshare.12197928.v4
title: Software Engineering Applications enabled by Blockchain Technology: A Systematic Mapping Study

description: The novel, yet disruptive blockchain technology has witnessed growing attention, due to its intrinsic potential. Besides the conventional domains that benefit from such a potential, such as finance, supply chain and healthcare, blockchain use cases in software engineering have emerged recently. This study aims to contribute to the body of knowledge of blockchain-oriented software engineering. Based on a systematic mapping study, we provide a quantitative and qualitative overview of the software engineering applications enabled by blockchain technology. We identified 22 primary studies and extracted data within the research type, research topic and contribution type facets. Findings suggest an increasing trend of studies since 2018. Additionally, findings reveal the potential of using blockchain technologies as an alternative to centralized systems, such as GitHub, Travis CI, and cloud-based package managers, and to establish trust between parties in collaborative software development. We also found out that smart contracts can enable the automation of a variety of software engineering activities that usually require human reasoning, such as the acceptance phase, payments to software engineers, and compliance adherence. In spite of the fact that the field is not yet mature, we believe that this study provides a holistic overview that may benefit researchers interested in bringing blockchain to the software industry; and practitioners willing to understand how blockchain could transform the software development industry.
DOI: 10.23729/40c4f149-d894-4126-bad2-79fe47b3e2fa
title: Biomechanical, biochemical, and near infrared spectral data of bovine knee ligaments and patellar tendon

description: This dataset contains biomechanical, biochemical, and near infrared spectral data of bovine knee ligaments and patellar tendon. The data was obtained via tensile testing, colorimetric biochemical methods and near infrared spectroscopy measurements of sample pieces taken from the mid-substance of these tissues.
DOI: 10.15161/oar.it/73555
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.5281/zenodo.4568170
title: Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms

description: This contains data for described in detail in our paper, "Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms" (Figueiredo <em>et al.</em>, 2021), which systematically investigates the patterns observed in hundreds of transcriptomics datasets from over sixty indications by using pathways and molecular interactions as a template.
DOI: 10.6084/m9.figshare.14139887
title: Supplementary Material for: Development and Evaluation of the Psychosocial Adaptation Questionnaire among Patients with Chronic Skin Disease

description: <b><i>Background/Objective:</i></b> Chronic skin disease (CSD) often has physiological, psychological, and social impacts, which requires the patient to adjust to achieve psychosocial adaptation (PSA). As a standardized assessment instrument was lacking, we developed a PSA questionnaire for patients with CSD (PSAQ-CSD). <b><i>Methods:</i></b> According to the steps of questionnaire development, a systematic process of scoping review, qualitative research, content validity expert review, testing in a sample of 321 adults, item analysis, and classical test theory methods were applied. <b><i>Results:</i></b> Following item analysis and exploratory factor analyses, 18 items were eventually entered into the model of confirmatory factor analyses, with a cumulative contribution of 65.435%. Three subscales were developed: emotional, self-cognitive, and social dimensions. Item analysis, exploratory factor analyses, and content validity expert review narrowed the subscales to 8, 6, and 4 items, respectively. <b><i>Conclusions:</i></b> The 18-item PSAQ-CSD has been confirmed to have good internal consistency reliability and convergent and discriminant validity. It may be a useful tool to evaluate the PSA among patients with CSD and provide a basis for further research.
DOI: 10.18154/rwth-2021-02330
title: A geomorphological perspective of active tectonics and Quaternary landscape development at the Dinarides-Hellenides transition (Northern Albania and Southern Montenegro) - APPENDIX
DOI: 10.5517/ccdc.csd.cc24674r
title: CCDC 1972193: Experimental Crystal Structure Determination

description: Related Article: Sophie Basler, Sabine Studer, Yike Zou, Takahiro Mori, Yusuke Ota, Anna Camus, H. Adrian Bunzel, Roger C. Helgeson, K. N. Houk, Gonzalo Jiménez-Osés, Donald Hilvert |2021|Nature Chemistry|13|231|doi:10.1038/s41557-020-00628-4
DOI: 10.5517/ccdc.csd.cc24678w
title: CCDC 1972197: Experimental Crystal Structure Determination

description: Related Article: Sophie Basler, Sabine Studer, Yike Zou, Takahiro Mori, Yusuke Ota, Anna Camus, H. Adrian Bunzel, Roger C. Helgeson, K. N. Houk, Gonzalo Jiménez-Osés, Donald Hilvert |2021|Nature Chemistry|13|231|doi:10.1038/s41557-020-00628-4
DOI: 10.5517/ccdc.csd.cc24679x
title: CCDC 1972198: Experimental Crystal Structure Determination

description: Related Article: Sophie Basler, Sabine Studer, Yike Zou, Takahiro Mori, Yusuke Ota, Anna Camus, H. Adrian Bunzel, Roger C. Helgeson, K. N. Houk, Gonzalo Jiménez-Osés, Donald Hilvert |2021|Nature Chemistry|13|231|doi:10.1038/s41557-020-00628-4
DOI: 10.5517/ccdc.csd.cc25q9qy
title: CCDC 2017440: Experimental Crystal Structure Determination

description: Related Article: Craig S. Day, Rosie J. Somerville and Ruben Martin|2021|Nat. Catal.|4|124|doi:10.1038/s41929-020-00560-3
DOI: 10.5517/ccdc.csd.cc25q9rz
title: CCDC 2017441: Experimental Crystal Structure Determination

description: Related Article: Craig S. Day, Rosie J. Somerville and Ruben Martin|2021|Nat. Catal.|4|124|doi:10.1038/s41929-020-00560-3
DOI: 10.5519/qd.zj0wi6yu
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (202 records)
DOI: 10.6084/m9.figshare.14134484.v1
title: Barbutia theroni sp. nov.

description: Stacks of microscopic images of a newly described amber fossil mite, Barbutia theroni sp. nov. (Acari: Raphignathoidea: Barbutiidae), deutonymph female.<br>Combined (focus-stacked) images were prepared with Helicon Focus 7.5 software, using algorithm B with subsequent manual addition of significant details like thin setae from the individual focal planes. <br><br>Amber piece (Eocene Rovno amber, collection number SIZK K-7087-II-A) containing the mite was cut from a larger piece of amber, trimmed to the minimal attainable thickness in mite's dorso-ventral direction (ca.0.3 mm), polished and then embedded in epoxy resin between two round coverslips following protocols of Sidorchuk (2011, 2013) and tools described by Sidorchuk and Vorontsov (2018). <br><br>The mite was imaged in dorsal and ventral aspects using Zeiss AxioImager A2 compound microscope with 100x oil immersion objective using Nomarski DIC. Stacks of images, comprising multiple focal planes, were obtained with an Olympus OM-D E-M10-II digital camera.<br>
DOI: 10.6084/m9.figshare.14134484
title: Barbutia theroni sp. nov.

description: Stacks of microscopic images of a newly described amber fossil mite, Barbutia theroni sp. nov. (Acari: Raphignathoidea: Barbutiidae), deutonymph female.<br>Combined (focus-stacked) images were prepared with Helicon Focus 7.5 software, using algorithm B with subsequent manual addition of significant details like thin setae from the individual focal planes. <br><br>Amber piece (Eocene Rovno amber, collection number SIZK K-7087-II-A) containing the mite was cut from a larger piece of amber, trimmed to the minimal attainable thickness in mite's dorso-ventral direction (ca.0.3 mm), polished and then embedded in epoxy resin between two round coverslips following protocols of Sidorchuk (2011, 2013) and tools described by Sidorchuk and Vorontsov (2018). <br><br>The mite was imaged in dorsal and ventral aspects using Zeiss AxioImager A2 compound microscope with 100x oil immersion objective using Nomarski DIC. Stacks of images, comprising multiple focal planes, were obtained with an Olympus OM-D E-M10-II digital camera.<br>
DOI: 10.5281/zenodo.4311237
title: A pan-ontology view of machine-derived knowledge representations and feedback mechanisms for curation - dataset snapshot

description: This dataset is a snapshot associated with an analysis of multiple ontologies. The snapshot includes ontology definition files downloaded through the OBO Foundry and the Ontology Lookup Service, as well as several processed files. For details, please see https://github.com/tkonopka/pan-ontology-ml.
DOI: 10.5281/zenodo.4029257
title: A pan-ontology view of machine-derived knowledge representations and feedback mechanisms for curation - dataset snapshot

description: This dataset is a snapshot associated with an analysis of multiple ontologies. The snapshot includes ontology definition files downloaded through the OBO Foundry and the Ontology Lookup Service, as well as several processed files. For details, please see https://github.com/tkonopka/pan-ontology-ml.
DOI: 10.13145/bacdive4018.20170829.2
title: Desulfocapsa thiozymogenes Janssen et al. 1997

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4019.20170829.2
title: Desulfocapsa sulfexigens Finster et al. 2000

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4881.20170829.2
title: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4882.20170829.2
title: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4883.20170829.2
title: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4884.20170829.2
title: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4885.20170829.2
title: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4886.20170829.2
title: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4887.20170829.2
title: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4888.20170829.2
title: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4889.20170829.2
title: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5631.20170829.2
title: Psychroserpens burtonensis Bowman et al. 1997

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.