cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21227/gx1z-tj11
title: A Novel Visualization of OCTA Coronal Views of Macula Vasculature

description:  The results of the experiemental work presented in the journal paper with the title : A Novel Visualization of Coronal Views for Macula Vasculature in Optical Coherence Tomography Angiography (OCTA), which has the following abstratct A novel computer-based method is proposed to address the current challenges of optical coherence tomography angiography (OCTA): (1) the need for considering the natural curvature of the eye; (2) the need for generating angiograms for individual choroid layers; and (3) the need for enhancing the visibility of blood flow below the outer retina region. A digital Image Processing (DIP) algorithm was designed and implemented on 20 subjects that were obtained from OCTA500 international dataset. The subjects were acquired at two OCTA fields of view (FOV) including the right and left eyes (OD and OS) that covered the five common macula disorders. The method includes image preprocessing, reconstruction, and enhancement stages. The sequential enface OCTA images at nearly 5µm macula depths were generated. The tubular morphology of the macula vasculature was enhanced for all macula depths. The resulting new ophthalmic views enable: (1) avoiding the superimposition of macula vasculature into a single projection map; (2) enhancing the OCTA perceptibility of blood vessels; and (3) capturing the macula’s 3D oval-shaped. The proposed method was successful in displaying macula vasculature for every 5µm macula depths, which was previously difficult to decipher. Thus, tracking the 3D propagation of the blood vessel network at all macula depths becomes possible. The method is independent of OCTA both FOVs, type of macula disorder, and the OD or OS eye. The enhancement stage remarkably improved the visibility of blood vessels at all macula depths, including the deep choroid layers. The method could be beneficial to the OCTA clinics.
DOI: 10.5281/zenodo.6501818
title: Data set for: Mapping magnetic signals of individual magnetite grains to their internal magnetic configurations using micromagnetic models

description: This data set contains the simulations and data analysis files used in the publication: "<em>Mapping magnetic signals of individual magnetite grains to their internal magnetic configurations using micromagnetic models</em>", by D. Cortés-Ortuño, K. Fabian and L. V. de Groot. The data set includes: Scripts and output files from MERRILL simulations Jupyter notebooks with data analysis Figures A preprint of this work can be found in: David Cortés-Ortuño, Karl Fabian and Lennart V. de Groot. <em>Mapping magnetic signals of individual magnetite grains to their internal magnetic configurations using micromagnetic models.</em> DOI: 10.1002/essoar.10510574.1. Earth and Space Science Open Archive. https://doi.org/10.1002/essoar.10510574.1 The README file in this dataset (in markdown format) contains full details about the simulations. The dataset also contains pre-computed data files to calculate the inversions and produce the figures and analyze the inversion data without processing the vbox files. To cite this dataset you can use the following bibtex entry: <pre><code>@Misc{Cortes2022, author = {Cortés-Ortuño, David and Fabian, Karl and de Groot, Lennart V.}, title = {{Data set for: Mapping magnetic signals of individual magnetite grains to their internal magnetic configurations using micromagnetic models}}, publisher = {Zenodo}, year = {2022}, doi = {10.5281/zenodo.6501818}, url = {https://doi.org/10.5281/zenodo.6501818}, } </code></pre>
DOI: 10.5281/zenodo.6501817
title: Data set for: Mapping magnetic signals of individual magnetite grains to their internal magnetic configurations using micromagnetic models

description: This data set contains the simulations and data analysis files used in the publication: "<em>Mapping magnetic signals of individual magnetite grains to their internal magnetic configurations using micromagnetic models</em>", by D. Cortés-Ortuño, K. Fabian and L. V. de Groot. The data set includes: Scripts and output files from MERRILL simulations Jupyter notebooks with data analysis Figures A preprint of this work can be found in: David Cortés-Ortuño, Karl Fabian and Lennart V. de Groot. <em>Mapping magnetic signals of individual magnetite grains to their internal magnetic configurations using micromagnetic models.</em> DOI: 10.1002/essoar.10510574.1. Earth and Space Science Open Archive. https://doi.org/10.1002/essoar.10510574.1 The README file in this dataset (in markdown format) contains full details about the simulations. The dataset also contains pre-computed data files to calculate the inversions and produce the figures and analyze the inversion data without processing the vbox files. To cite this dataset you can use the following bibtex entry: <pre><code>@Misc{Cortes2022, author = {Cortés-Ortuño, David and Fabian, Karl and de Groot, Lennart V.}, title = {{Data set for: Mapping magnetic signals of individual magnetite grains to their internal magnetic configurations using micromagnetic models}}, publisher = {Zenodo}, year = {2022}, doi = {10.5281/zenodo.6501818}, url = {https://doi.org/10.5281/zenodo.6501818}, } </code></pre>
DOI: 10.5517/ccdc.csd.cc250l60
title: CCDC 1996561: Experimental Crystal Structure Determination

description: Related Article: Fu-Sheng Guo, Mian He, Guo-Zhang Huang, Sean R. Giblin, David Billington, Frank W. Heinemann, Ming-Liang Tong, Akseli Mansikkamäki, Richard A. Layfield|2022|Inorg.Chem.|61|6017|doi:10.1021/acs.inorgchem.1c03980
DOI: 10.5517/ccdc.csd.cc28c2yp
title: CCDC 2096032: Experimental Crystal Structure Determination

description: Related Article: Fu-Sheng Guo, Mian He, Guo-Zhang Huang, Sean R. Giblin, David Billington, Frank W. Heinemann, Ming-Liang Tong, Akseli Mansikkamäki, Richard A. Layfield|2022|Inorg.Chem.|61|6017|doi:10.1021/acs.inorgchem.1c03980
DOI: 10.5517/ccdc.csd.cc28c2zq
title: CCDC 2096033: Experimental Crystal Structure Determination

description: Related Article: Fu-Sheng Guo, Mian He, Guo-Zhang Huang, Sean R. Giblin, David Billington, Frank W. Heinemann, Ming-Liang Tong, Akseli Mansikkamäki, Richard A. Layfield|2022|Inorg.Chem.|61|6017|doi:10.1021/acs.inorgchem.1c03980
DOI: 10.5517/ccdc.csd.cc28c30s
title: CCDC 2096034: Experimental Crystal Structure Determination

description: Related Article: Fu-Sheng Guo, Mian He, Guo-Zhang Huang, Sean R. Giblin, David Billington, Frank W. Heinemann, Ming-Liang Tong, Akseli Mansikkamäki, Richard A. Layfield|2022|Inorg.Chem.|61|6017|doi:10.1021/acs.inorgchem.1c03980
DOI: 10.5517/ccdc.csd.cc250l5z
title: CCDC 1996560: Experimental Crystal Structure Determination

description: Related Article: Fu-Sheng Guo, Mian He, Guo-Zhang Huang, Sean R. Giblin, David Billington, Frank W. Heinemann, Ming-Liang Tong, Akseli Mansikkamäki, Richard A. Layfield|2022|Inorg.Chem.|61|6017|doi:10.1021/acs.inorgchem.1c03980
DOI: 10.5517/ccdc.csd.cc2b4yv9
title: CCDC 2149721: Experimental Crystal Structure Determination

description: Related Article: Jianjian Zha, Zhuoer Wang, Bingxin Liu, Qitao Tan, Bin Xu|2022|Org.Lett.|24|2863|doi:10.1021/acs.orglett.2c00824
DOI: 10.5517/ccdc.csd.cc2b4z1j
title: CCDC 2149727: Experimental Crystal Structure Determination

description: Related Article: Jianjian Zha, Zhuoer Wang, Bingxin Liu, Qitao Tan, Bin Xu|2022|Org.Lett.|24|2863|doi:10.1021/acs.orglett.2c00824
DOI: 10.5517/ccdc.csd.cc27nxkd
title: CCDC 2075684: Experimental Crystal Structure Determination

description: Related Article: Helena Keil, Regine Herbst-Irmer, Saskia Rathjen, Corinna Girschik, Thomas Müller, Dietmar Stalke|2022|Inorg.Chem.|61|6319|doi:10.1021/acs.inorgchem.2c00629
DOI: 10.5517/ccdc.csd.cc2b8bpn
title: CCDC 2152971: Experimental Crystal Structure Determination

description: Related Article: Helena Keil, Regine Herbst-Irmer, Saskia Rathjen, Corinna Girschik, Thomas Müller, Dietmar Stalke|2022|Inorg.Chem.|61|6319|doi:10.1021/acs.inorgchem.2c00629
DOI: 10.5517/ccdc.csd.cc2b8bqp
title: CCDC 2152972: Experimental Crystal Structure Determination

description: Related Article: Helena Keil, Regine Herbst-Irmer, Saskia Rathjen, Corinna Girschik, Thomas Müller, Dietmar Stalke|2022|Inorg.Chem.|61|6319|doi:10.1021/acs.inorgchem.2c00629
DOI: 10.5517/ccdc.csd.cc2b8brq
title: CCDC 2152973: Experimental Crystal Structure Determination

description: Related Article: Helena Keil, Regine Herbst-Irmer, Saskia Rathjen, Corinna Girschik, Thomas Müller, Dietmar Stalke|2022|Inorg.Chem.|61|6319|doi:10.1021/acs.inorgchem.2c00629
DOI: 10.5517/ccdc.csd.cc2bd8df
title: CCDC 2156744: Experimental Crystal Structure Determination

description: Related Article: Zheng-Fei Li, Chong-Lin Zhu, Yun Zhang, Yun Yao, Chong-Dao Lu|2022|Org.Lett.|24|2883|doi:10.1021/acs.orglett.2c00888
DOI: 10.5517/ccdc.csd.cc2bd8fg
title: CCDC 2156745: Experimental Crystal Structure Determination

description: Related Article: Zheng-Fei Li, Chong-Lin Zhu, Yun Zhang, Yun Yao, Chong-Dao Lu|2022|Org.Lett.|24|2883|doi:10.1021/acs.orglett.2c00888
DOI: 10.5517/ccdc.csd.cc2bd8gh
title: CCDC 2156746: Experimental Crystal Structure Determination

description: Related Article: Zheng-Fei Li, Chong-Lin Zhu, Yun Zhang, Yun Yao, Chong-Dao Lu|2022|Org.Lett.|24|2883|doi:10.1021/acs.orglett.2c00888
DOI: 10.5517/ccdc.csd.cc2bd8hj
title: CCDC 2156747: Experimental Crystal Structure Determination

description: Related Article: Zheng-Fei Li, Chong-Lin Zhu, Yun Zhang, Yun Yao, Chong-Dao Lu|2022|Org.Lett.|24|2883|doi:10.1021/acs.orglett.2c00888
DOI: 10.5517/ccdc.csd.cc2bfr4p
title: CCDC 2158162: Experimental Crystal Structure Determination

description: Related Article: Zheng-Fei Li, Chong-Lin Zhu, Yun Zhang, Yun Yao, Chong-Dao Lu|2022|Org.Lett.|24|2883|doi:10.1021/acs.orglett.2c00888
DOI: 10.6084/m9.figshare.19519498.v1
title: Expanding the wood anatomy economics spectrum: the correlates of vessel element lengths and pit apertures sizes in tropical forest trees

description: Plant functions all have an anatomical basis, but there are still major knowledge gaps in functional wood anatomy, especially of tropical trees. To examine the relationships between the functional anatomy of woody tissue in poorly studied rainforest trees, focussing on anatomical traits including vessel element lengths, pit aperture dimensions, grouping indices and xylem tissue fractions. We examined how these anatomical traits influence drought vulnerability indices, theoretical conductivity and structural traits such as wood density and stem diameter. We measured wood anatomical traits and higher-level structural traits from 25 Atlantic rainforest species and examined the relationships among these traits using univariate and multivariate methods. Regression models were used to explore how anatomical traits were related to drought vulnerability, theoretical conductivity, and wood structural traits. Vulnerability index was positively correlated with parenchyma fraction and both intervessel and vessel-ray pit aperture diameters. Theoretical conductivity was negatively associated with fibre fractions. Wood density was positively associated with fibre fraction and was also related to parenchyma and vessel fractions and vessel element lengths. Anatomical traits constitute an important economics spectrum, which could be positioned against leaf economics spectra to further our understanding of plant ecological and hydraulic strategies.
DOI: 10.6084/m9.figshare.19519498
title: Expanding the wood anatomy economics spectrum: the correlates of vessel element lengths and pit apertures sizes in tropical forest trees

description: Plant functions all have an anatomical basis, but there are still major knowledge gaps in functional wood anatomy, especially of tropical trees. To examine the relationships between the functional anatomy of woody tissue in poorly studied rainforest trees, focussing on anatomical traits including vessel element lengths, pit aperture dimensions, grouping indices and xylem tissue fractions. We examined how these anatomical traits influence drought vulnerability indices, theoretical conductivity and structural traits such as wood density and stem diameter. We measured wood anatomical traits and higher-level structural traits from 25 Atlantic rainforest species and examined the relationships among these traits using univariate and multivariate methods. Regression models were used to explore how anatomical traits were related to drought vulnerability, theoretical conductivity, and wood structural traits. Vulnerability index was positively correlated with parenchyma fraction and both intervessel and vessel-ray pit aperture diameters. Theoretical conductivity was negatively associated with fibre fractions. Wood density was positively associated with fibre fraction and was also related to parenchyma and vessel fractions and vessel element lengths. Anatomical traits constitute an important economics spectrum, which could be positioned against leaf economics spectra to further our understanding of plant ecological and hydraulic strategies.
DOI: 10.6084/m9.figshare.19687031
title: Additional file 1 of Pathogenic variants carrier screening in New Brunswick: Acadians reveal high carrier frequency for multiple genetic disorders

description: Additional file 1. Table S1. Genes included in sequencing panel. Table S2. Cohort characteristics. Table S3. Genetic diseases associated with genes in which pathogenic variants have been detected. Table S4. Allele frequency (AF) and heterozygotes frequencies (HF) comparisons with higher risk populations on gnomAD. Table S5. Hardy-Weinberg comparison.
DOI: 10.6084/m9.figshare.19687031.v1
title: Additional file 1 of Pathogenic variants carrier screening in New Brunswick: Acadians reveal high carrier frequency for multiple genetic disorders

description: Additional file 1. Table S1. Genes included in sequencing panel. Table S2. Cohort characteristics. Table S3. Genetic diseases associated with genes in which pathogenic variants have been detected. Table S4. Allele frequency (AF) and heterozygotes frequencies (HF) comparisons with higher risk populations on gnomAD. Table S5. Hardy-Weinberg comparison.
DOI: 10.6084/m9.figshare.19687078
title: Additional file 1 of Sustained circulation of yellow fever virus in Cameroon: an analysis of laboratory surveillance data, 2010–2020

description: Additional file 1: Table S1. Yellow fever IgM positive cases with PRNT results.
DOI: 10.6084/m9.figshare.19687078.v1
title: Additional file 1 of Sustained circulation of yellow fever virus in Cameroon: an analysis of laboratory surveillance data, 2010–2020

description: Additional file 1: Table S1. Yellow fever IgM positive cases with PRNT results.
DOI: 10.6084/m9.figshare.19687081
title: Additional file 2 of Sustained circulation of yellow fever virus in Cameroon: an analysis of laboratory surveillance data, 2010–2020

description: Additional file 2: Table S2. Yellow fever IgM positive cases per health district.
DOI: 10.6084/m9.figshare.19687081.v1
title: Additional file 2 of Sustained circulation of yellow fever virus in Cameroon: an analysis of laboratory surveillance data, 2010–2020

description: Additional file 2: Table S2. Yellow fever IgM positive cases per health district.
DOI: 10.6084/m9.figshare.19687084
title: Additional file 3 of Sustained circulation of yellow fever virus in Cameroon: an analysis of laboratory surveillance data, 2010–2020

description: Additional file 3: Table S3. Yellow fever IgM positive cases per year and per month.
DOI: 10.6084/m9.figshare.19687084.v1
title: Additional file 3 of Sustained circulation of yellow fever virus in Cameroon: an analysis of laboratory surveillance data, 2010–2020

description: Additional file 3: Table S3. Yellow fever IgM positive cases per year and per month.
DOI: 10.6084/m9.figshare.12476618
title: Additional file 1 of Multimorbidity patterns, polypharmacy and their association with liver and kidney abnormalities in people over 65 years of age: a longitudinal study

description: Additional file 1. Prevalence of Top 30 Drugs during the follow up period in people over 65 years in Catalonia.
DOI: 10.6084/m9.figshare.12476618.v1
title: Additional file 1 of Multimorbidity patterns, polypharmacy and their association with liver and kidney abnormalities in people over 65 years of age: a longitudinal study

description: Additional file 1. Prevalence of Top 30 Drugs during the follow up period in people over 65 years in Catalonia.
DOI: 10.6084/m9.figshare.12476624
title: Additional file 2 of Multimorbidity patterns, polypharmacy and their association with liver and kidney abnormalities in people over 65 years of age: a longitudinal study

description: Additional file 2. Multimorbidity patterns with Hidden Markov models at baseline (year 2012) and final year (2016) of the study. Drug use
DOI: 10.6084/m9.figshare.12476624.v1
title: Additional file 2 of Multimorbidity patterns, polypharmacy and their association with liver and kidney abnormalities in people over 65 years of age: a longitudinal study

description: Additional file 2. Multimorbidity patterns with Hidden Markov models at baseline (year 2012) and final year (2016) of the study. Drug use
DOI: 10.6084/m9.figshare.12476627
title: Additional file 3 of Multimorbidity patterns, polypharmacy and their association with liver and kidney abnormalities in people over 65 years of age: a longitudinal study

description: Additional file 3. Evolution of kidney function during follow up by clusters.
DOI: 10.6084/m9.figshare.12476627.v1
title: Additional file 3 of Multimorbidity patterns, polypharmacy and their association with liver and kidney abnormalities in people over 65 years of age: a longitudinal study

description: Additional file 3. Evolution of kidney function during follow up by clusters.
DOI: 10.6084/m9.figshare.19687079.v1
title: Additional file 5 of Insights into the trihelix transcription factor responses to salt and other stresses in Osmanthus fragrans

description: Additional file 5.
DOI: 10.6084/m9.figshare.12476636
title: Additional file 4 of Multimorbidity patterns, polypharmacy and their association with liver and kidney abnormalities in people over 65 years of age: a longitudinal study

description: Additional file 4. Evolution of liver function during follow up by clusters.
DOI: 10.6084/m9.figshare.19687079
title: Additional file 5 of Insights into the trihelix transcription factor responses to salt and other stresses in Osmanthus fragrans

description: Additional file 5.
DOI: 10.6084/m9.figshare.12476636.v1
title: Additional file 4 of Multimorbidity patterns, polypharmacy and their association with liver and kidney abnormalities in people over 65 years of age: a longitudinal study

description: Additional file 4. Evolution of liver function during follow up by clusters.
DOI: 10.6084/m9.figshare.19687085
title: Additional file 7 of Insights into the trihelix transcription factor responses to salt and other stresses in Osmanthus fragrans

description: Additional file 7.
DOI: 10.6084/m9.figshare.19687085.v1
title: Additional file 7 of Insights into the trihelix transcription factor responses to salt and other stresses in Osmanthus fragrans

description: Additional file 7.
DOI: 10.6084/m9.figshare.19687112
title: Additional file 5 of PTH (1-34) enhances the therapeutic effect of bone marrow mesenchymal stem cell-derived exosomes by inhibiting proinflammatory cytokines expression on OA chondrocyte repair in vitro

description: Additional file 5: Table 1. List of the three PCR Primer Pairs chosen for in vitro PCR validation.
DOI: 10.6084/m9.figshare.19687112.v1
title: Additional file 5 of PTH (1-34) enhances the therapeutic effect of bone marrow mesenchymal stem cell-derived exosomes by inhibiting proinflammatory cytokines expression on OA chondrocyte repair in vitro

description: Additional file 5: Table 1. List of the three PCR Primer Pairs chosen for in vitro PCR validation.
DOI: 10.6084/m9.figshare.19687133.v1
title: Additional file 3 of Differential gene expression in aphids following virus acquisition from plants or from an artificial medium

description: Additional file 3. List of DEGs with the DESeq2 analysis (Plant_with_TuYV vs Plant_Control and Medium_with_TuYV vs Medium_Control).
DOI: 10.6084/m9.figshare.19687133
title: Additional file 3 of Differential gene expression in aphids following virus acquisition from plants or from an artificial medium

description: Additional file 3. List of DEGs with the DESeq2 analysis (Plant_with_TuYV vs Plant_Control and Medium_with_TuYV vs Medium_Control).
DOI: 10.6084/m9.figshare.19687142.v1
title: Additional file 6 of Differential gene expression in aphids following virus acquisition from plants or from an artificial medium

description: Additional file 6. List of DEGs with the NOISeq analysis (Plant_with_TuYV vs Plant Control and Medium_with_TuYV vs Medium_Control).
DOI: 10.6084/m9.figshare.19687142
title: Additional file 6 of Differential gene expression in aphids following virus acquisition from plants or from an artificial medium

description: Additional file 6. List of DEGs with the NOISeq analysis (Plant_with_TuYV vs Plant Control and Medium_with_TuYV vs Medium_Control).
DOI: 10.6084/m9.figshare.19687157
title: Additional file 1 of Metabolome and transcriptome profiling unveil the mechanisms of light-induced anthocyanin synthesis in rabbiteye blueberry (vaccinium ashei: Reade)

description: Additional file 1: Figure S1. Heat map analysis of compound composition under different light intensity. Table S1. Compound classification. Table S2. Differential metabolite analysis. Table S3. 37 common metabolites. Table S4. Overview of mapping of RNA-seq reads. Table S5. Differential gene analysis. Table S6. Annotation analysis of differential genes KEGG and GO. Table S7. Screening genes for anthocyanin synthesis pathway. Table S8. qRT-PCR. Table S9. Correlation analysis between anthocyanin content and key genes.
DOI: 10.6084/m9.figshare.19687157.v1
title: Additional file 1 of Metabolome and transcriptome profiling unveil the mechanisms of light-induced anthocyanin synthesis in rabbiteye blueberry (vaccinium ashei: Reade)

description: Additional file 1: Figure S1. Heat map analysis of compound composition under different light intensity. Table S1. Compound classification. Table S2. Differential metabolite analysis. Table S3. 37 common metabolites. Table S4. Overview of mapping of RNA-seq reads. Table S5. Differential gene analysis. Table S6. Annotation analysis of differential genes KEGG and GO. Table S7. Screening genes for anthocyanin synthesis pathway. Table S8. qRT-PCR. Table S9. Correlation analysis between anthocyanin content and key genes.
DOI: 10.6084/m9.figshare.19687213
title: Additional file 2 of The impact of a digital joint school educational programme on post-operative outcomes following lower limb arthroplasty: a retrospective comparative cohort study

description: Additional file 2.
DOI: 10.6084/m9.figshare.19687244
title: Additional file 15 of Batch-effect detection, correction and characterisation in Illumina HumanMethylation450 and MethylationEPIC BeadChip array data

description: Additional file 15. Table S1. Reference log-variance ratio and mean β shift values for the five datasets.
DOI: 10.6084/m9.figshare.19687244.v1
title: Additional file 15 of Batch-effect detection, correction and characterisation in Illumina HumanMethylation450 and MethylationEPIC BeadChip array data

description: Additional file 15. Table S1. Reference log-variance ratio and mean β shift values for the five datasets.