cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5797749.v2
title: Measurement of L value in tissue engineering skin

description: Measurement of L value in tissue engineering skin
DOI: 10.6084/m9.figshare.5797725
title: Additional file 4: of Comparison of three assembly strategies for a heterozygous seedless grapevine genome assembly

description: Plant transcription factor identification for all four assemblies and V. vinifera (VCOST.v3) using PlantTFDB. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.5797725.v1
title: Additional file 4: of Comparison of three assembly strategies for a heterozygous seedless grapevine genome assembly

description: Plant transcription factor identification for all four assemblies and V. vinifera (VCOST.v3) using PlantTFDB. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.5797716
title: Additional file 3: of Comparison of three assembly strategies for a heterozygous seedless grapevine genome assembly

description: Functional characterization of predicted genes for the four assemblies using Blast2GO, BLASTX and BLASTP. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.5797716.v1
title: Additional file 3: of Comparison of three assembly strategies for a heterozygous seedless grapevine genome assembly

description: Functional characterization of predicted genes for the four assemblies using Blast2GO, BLASTX and BLASTP. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.5797707
title: Additional file 6: of Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)

description: C. cacaofunesta and C. fimbriata Secretomes analysis. (XLSX 492 kb)
DOI: 10.6084/m9.figshare.5797707.v1
title: Additional file 6: of Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)

description: C. cacaofunesta and C. fimbriata Secretomes analysis. (XLSX 492 kb)
DOI: 10.6084/m9.figshare.5797701
title: Additional file 1: of Comparison of three assembly strategies for a heterozygous seedless grapevine genome assembly

description: Assembly statistics for four Vitis vinifera ‘Sultanina’ de novo assemblies. a: Assembly statistics for four Vitis vinifera ‘Sultanina’ de novo assemblies. All assemblies evaluated using Assemblathon metrics and scaffold size limited to 1 kbp. b: Assembly statistics for PLAT*_GC assembly steps. All assemblies were evaluated using Assemblathon metrics and scaffold size limited to 1kbp. c: Assembly statistics for four Vitis vinifera ‘Sultanina’ de novo assemblies. All full assemblies (scaffold ≥ 500 nt) were evaluated using Assemblathon metrics. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.5797701.v1
title: Additional file 1: of Comparison of three assembly strategies for a heterozygous seedless grapevine genome assembly

description: Assembly statistics for four Vitis vinifera ‘Sultanina’ de novo assemblies. a: Assembly statistics for four Vitis vinifera ‘Sultanina’ de novo assemblies. All assemblies evaluated using Assemblathon metrics and scaffold size limited to 1 kbp. b: Assembly statistics for PLAT*_GC assembly steps. All assemblies were evaluated using Assemblathon metrics and scaffold size limited to 1kbp. c: Assembly statistics for four Vitis vinifera ‘Sultanina’ de novo assemblies. All full assemblies (scaffold ≥ 500 nt) were evaluated using Assemblathon metrics. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.5797698
title: Additional file 5: of Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)

description: Predicted proteins in CAZy family_GBCAM database_GHs_Cellulose activities. (XLSX 87 kb)
DOI: 10.6084/m9.figshare.5797698.v1
title: Additional file 5: of Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)

description: Predicted proteins in CAZy family_GBCAM database_GHs_Cellulose activities. (XLSX 87 kb)
DOI: 10.6084/m9.figshare.5797692
title: Additional file 4: of Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)

description: OrthoMCL analysis of C. cacaofunesta and C. fimbriata. (XLSX 255 kb)
DOI: 10.6084/m9.figshare.5797692.v1
title: Additional file 4: of Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)

description: OrthoMCL analysis of C. cacaofunesta and C. fimbriata. (XLSX 255 kb)
DOI: 10.6084/m9.figshare.5797677
title: Additional file 3: of Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)

description: No-hits proteins identified in C. cacaofunesta and C. fimbriata genomes. (XLSX 79 kb)
DOI: 10.6084/m9.figshare.5797677.v1
title: Additional file 3: of Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)

description: No-hits proteins identified in C. cacaofunesta and C. fimbriata genomes. (XLSX 79 kb)
DOI: 10.6084/m9.figshare.5797647
title: Additional file 1: of Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)

description: List of predicted genes and annotation of C. cacaofunesta and C. fimbriata. (XLSX 2372 kb)
DOI: 10.6084/m9.figshare.5797647.v1
title: Additional file 1: of Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)

description: List of predicted genes and annotation of C. cacaofunesta and C. fimbriata. (XLSX 2372 kb)
DOI: 10.6084/m9.figshare.5797620
title: Additional file 14: of Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)

description: C. cacaofunesta GPI-anchored proteins _Effectors CSEP. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.5797620.v1
title: Additional file 14: of Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)

description: C. cacaofunesta GPI-anchored proteins _Effectors CSEP. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.5797602
title: Additional file 1: Table S1. of Insights into the genetics of blood pressure in black South African individuals: the Birth to Twenty cohort

description: Correlation of findings in our study with previous studies. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.5797602.v1
title: Additional file 1: Table S1. of Insights into the genetics of blood pressure in black South African individuals: the Birth to Twenty cohort

description: Correlation of findings in our study with previous studies. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.5797596
title: Additional file 13: of Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)

description: Blast proteins form True Vascular fungi against C. cacaofunesta proteome. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5797596.v1
title: Additional file 13: of Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)

description: Blast proteins form True Vascular fungi against C. cacaofunesta proteome. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5797545
title: Additional file 10: of Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)

description: C. cacaofunesta PI-PLCs Identification_Genomic Distribution_GC content in PI-PLC clusters. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.5797545.v1
title: Additional file 10: of Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)

description: C. cacaofunesta PI-PLCs Identification_Genomic Distribution_GC content in PI-PLC clusters. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.5797497
title: Additional file 2: of Development and validation of self-reported line drawings of the modified Beighton score for the assessment of generalised joint hypermobility

description: Reproducibility and agreement between the self-reporting line drawings and the clinical assessment. Reliability data for self-reporting instrument. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.5797497.v1
title: Additional file 2: of Development and validation of self-reported line drawings of the modified Beighton score for the assessment of generalised joint hypermobility

description: Reproducibility and agreement between the self-reporting line drawings and the clinical assessment. Reliability data for self-reporting instrument. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.5797476
title: Additional file 1: of Development and validation of self-reported line drawings of the modified Beighton score for the assessment of generalised joint hypermobility

description: Validity data for the self-reporting line drawing instrument. Validity data for self-reporting instrument. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.5797476.v1
title: Additional file 1: of Development and validation of self-reported line drawings of the modified Beighton score for the assessment of generalised joint hypermobility

description: Validity data for the self-reporting line drawing instrument. Validity data for self-reporting instrument. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.5797434
title: Analysis of skin pigmentation

description: Correlation analysis for skin color (L*), melanocytes ratio and melanin concentration
DOI: 10.6084/m9.figshare.5797416
title: A 500 U/2 mL dilution of abobotulinumtoxinA vs. placebo: randomized study in cervical dystonia

description: <b>Purpose/aim:</b> AbobotulinumtoxinA (Dysport®, Ipsen Biopharmaceuticals, Inc., Basking Ridge, NJ, USA) is an acetylcholine release inhibitor and a neuromuscular blocking agent. The United States prescribing information for abobotulinumtoxinA previously indicated only one dilution for cervical dystonia: 500 U/1 mL. Clinical trial data supporting a larger volume with a 500 U/2 mL dilution would offer clinicians flexibility with injection volume to better meet patient needs. <b>Materials and methods:</b> We conducted a 12-week, phase 3b, multicenter, randomized, double-blind, placebo-controlled trial (NCT01753310). Adult subjects with a primary diagnosis of cervical dystonia were randomized (2:1) to receive a single injection of either abobotulinumtoxinA, 500 U/2 mL dilution, or placebo. The primary efficacy endpoint was changed from baseline in Toronto Western Spasmodic Torticollis Rating Scale total score at Week 4. <b>Results:</b> A total of 134 subjects (abobotulinumtoxinA, <i>n</i> = 89; placebo, <i>n</i> = 45) were randomized (intent-to-treat population) and 129 (abobotulinumtoxinA, <i>n</i> = 84; placebo, <i>n</i> = 45) completed the Week 4 primary endpoint evaluation (modified intent-to-treat population). In the modified intent-to-treat population, subjects receiving abobotulinumtoxinA experienced significantly greater changes from baseline versus placebo on the primary endpoint (weighted overall treatment difference −8.3, <i>P</i> &lt; 0.001). The most common treatment-emergent adverse events (TEAEs) were dysphagia, muscle weakness, neck pain and headache. Overall, TEAEs were consistent with those reported in the abobotulinumtoxinA prescribing information (1 mL dilution) for cervical dystonia patients. <b>Conclusions:</b> This trial provides evidence that a 500 U/2 mL dilution is an effective treatment for cervical dystonia and exhibits a safety profile consistent with the known safety profile of abobotulinumtoxinA.
DOI: 10.6084/m9.figshare.5797416.v1
title: A 500 U/2 mL dilution of abobotulinumtoxinA vs. placebo: randomized study in cervical dystonia

description: <b>Purpose/aim:</b> AbobotulinumtoxinA (Dysport®, Ipsen Biopharmaceuticals, Inc., Basking Ridge, NJ, USA) is an acetylcholine release inhibitor and a neuromuscular blocking agent. The United States prescribing information for abobotulinumtoxinA previously indicated only one dilution for cervical dystonia: 500 U/1 mL. Clinical trial data supporting a larger volume with a 500 U/2 mL dilution would offer clinicians flexibility with injection volume to better meet patient needs. <b>Materials and methods:</b> We conducted a 12-week, phase 3b, multicenter, randomized, double-blind, placebo-controlled trial (NCT01753310). Adult subjects with a primary diagnosis of cervical dystonia were randomized (2:1) to receive a single injection of either abobotulinumtoxinA, 500 U/2 mL dilution, or placebo. The primary efficacy endpoint was changed from baseline in Toronto Western Spasmodic Torticollis Rating Scale total score at Week 4. <b>Results:</b> A total of 134 subjects (abobotulinumtoxinA, <i>n</i> = 89; placebo, <i>n</i> = 45) were randomized (intent-to-treat population) and 129 (abobotulinumtoxinA, <i>n</i> = 84; placebo, <i>n</i> = 45) completed the Week 4 primary endpoint evaluation (modified intent-to-treat population). In the modified intent-to-treat population, subjects receiving abobotulinumtoxinA experienced significantly greater changes from baseline versus placebo on the primary endpoint (weighted overall treatment difference −8.3, <i>P</i> &lt; 0.001). The most common treatment-emergent adverse events (TEAEs) were dysphagia, muscle weakness, neck pain and headache. Overall, TEAEs were consistent with those reported in the abobotulinumtoxinA prescribing information (1 mL dilution) for cervical dystonia patients. <b>Conclusions:</b> This trial provides evidence that a 500 U/2 mL dilution is an effective treatment for cervical dystonia and exhibits a safety profile consistent with the known safety profile of abobotulinumtoxinA.
DOI: 10.6084/m9.figshare.5797353
title: Integrative analyses of <i>Nervilia</i> (Orchidaceae) section <i>Linervia</i> reveal further undescribed cryptic diversity in Thailand

description: The delimitation of cryptic species is necessary to accurately classify and appropriately conserve biodiversity. Integrative analyses can be incisive in detecting and circumscribing cryptic diversity, especially in species complexes whose members are delineated by minor or overlapping morphological variation. We adopt an integrative approach to assess species relationships and resolve species boundaries in the taxonomically difficult <i>Nervilia adolphi/punctata</i> species alliance of <i>N.</i> sect. <i>Linervia</i>, an Old World complex of reduced, one-flowered terrestrial orchids that is both species-rich and poorly known in tropical and warm temperate Asia. We sampled 12 of the 27 known species of the alliance in Asia, including all four species reported from Thailand and a further 20 plants collected in that country that could not be satisfactorily identified using morphology alone. Phylogenetic analyses using one nuclear (ITS) and two plastid (<i>mat</i>K and <i>trn</i>L-F) markers confirmed both <i>N.</i> sect. <i>Linervia</i> and the alliance itself as monophyletic, and corroborated 11 of the 12 sampled species; <i>N. punctata</i> proved polyphyletic, with the Thai samples referred to this Indonesian species falling sister to the Himalayan <i>N. mackinnonii</i>. The 20 unidentified Thai samples formed three distinct, strongly supported clades. STACEY, a Bayesian coalescence approach to species delimitation, resolved the same three clusters, but provided evidence suggesting that one comprised two distinct sub-clades. Building on this genetic evidence, we identify subtle morphological differences and invoke a diagnosable species concept to circumscribe three previously unrecognized cryptic species from Thailand. This objective approach to species delimitation validates ostensibly minor morphological differences as a basis for differentiating species within the alliance, paving the way for a global analysis of species boundaries throughout the genus as a whole.
DOI: 10.6084/m9.figshare.5797353.v1
title: Integrative analyses of <i>Nervilia</i> (Orchidaceae) section <i>Linervia</i> reveal further undescribed cryptic diversity in Thailand

description: The delimitation of cryptic species is necessary to accurately classify and appropriately conserve biodiversity. Integrative analyses can be incisive in detecting and circumscribing cryptic diversity, especially in species complexes whose members are delineated by minor or overlapping morphological variation. We adopt an integrative approach to assess species relationships and resolve species boundaries in the taxonomically difficult <i>Nervilia adolphi/punctata</i> species alliance of <i>N.</i> sect. <i>Linervia</i>, an Old World complex of reduced, one-flowered terrestrial orchids that is both species-rich and poorly known in tropical and warm temperate Asia. We sampled 12 of the 27 known species of the alliance in Asia, including all four species reported from Thailand and a further 20 plants collected in that country that could not be satisfactorily identified using morphology alone. Phylogenetic analyses using one nuclear (ITS) and two plastid (<i>mat</i>K and <i>trn</i>L-F) markers confirmed both <i>N.</i> sect. <i>Linervia</i> and the alliance itself as monophyletic, and corroborated 11 of the 12 sampled species; <i>N. punctata</i> proved polyphyletic, with the Thai samples referred to this Indonesian species falling sister to the Himalayan <i>N. mackinnonii</i>. The 20 unidentified Thai samples formed three distinct, strongly supported clades. STACEY, a Bayesian coalescence approach to species delimitation, resolved the same three clusters, but provided evidence suggesting that one comprised two distinct sub-clades. Building on this genetic evidence, we identify subtle morphological differences and invoke a diagnosable species concept to circumscribe three previously unrecognized cryptic species from Thailand. This objective approach to species delimitation validates ostensibly minor morphological differences as a basis for differentiating species within the alliance, paving the way for a global analysis of species boundaries throughout the genus as a whole.
DOI: 10.6084/m9.figshare.5797338
title: JoC_Exp1data.csv

description: <b>Supplementary Data Files</b> <br>These downloadable files accompany the Research Article:<br>Beyersmann, E., et al. 2018 Taking the Book from the Bookshelf: Masked Constituent Priming Effects from Compound Words and Nonwords. <i>Journal of Cognition</i>, DOI: https://doi.org/10.5334/joc.11<br><br><b>Article Abstract</b><b><br></b>Recent evidence from visual word recognition points to the important role of embedded words, suggesting that embedded words are activated independently of whether they are accompanied by an affix or a non-affix. The goal of the present research was to more closely examine the mechanisms involved in embedded word activation, particularly with respect to the “edge-alignedness” of the embedded word. We conducted two experiments that used masked priming in combination with lexical decision. In Experiment 1, monomorphemic target words were either preceded by a compound word prime (e.g., textbook-BOOK/textbook-TEXT), a compound-nonword prime (e.g., pilebook-BOOK/textpile-TEXT), a non-compound nonword prime (e.g., pimebook-BOOK/textpime-TEXT) or an unrelated prime (e.g., textjail-BOOK/jailbook-TEXT). The results revealed significant priming effects, not only in the compound word and compound-nonword conditions, but also in the non-compound nonword condition, suggesting that embedded words (e.g., book) were activated independently of whether they occurred in combination with a real morpheme (e.g., pilebook) or a non-morphemic constituent (e.g., pimebook). Priming in the compound word condition was greater than in the two nonword conditions, indicating that participants benefited from the whole-word representation of real compound words. Constituent priming occurred independently of whether the target word was the first or the second embedded constituent of the prime (e.g., textbook-BOOK vs. textbook-TEXT). In Experiment 2, significant priming effects were found for edge-aligned embedded constituents (e.g., pimebook-BOOK), but not for mid-embedded (e.g., pibookme-BOOK) or the outer-embedded constituents (e.g., bopimeok-BOOK), suggesting that edge-alignedness is a key factor determining the activation of embedded words.
DOI: 10.6084/m9.figshare.5797338.v1
title: JoC_Exp1data.csv

description: <b>Supplementary Data Files</b> <br>These downloadable files accompany the Research Article:<br>Beyersmann, E., et al. 2018 Taking the Book from the Bookshelf: Masked Constituent Priming Effects from Compound Words and Nonwords. <i>Journal of Cognition</i>, DOI: https://doi.org/10.5334/joc.11<br><br><b>Article Abstract</b><b><br></b>Recent evidence from visual word recognition points to the important role of embedded words, suggesting that embedded words are activated independently of whether they are accompanied by an affix or a non-affix. The goal of the present research was to more closely examine the mechanisms involved in embedded word activation, particularly with respect to the “edge-alignedness” of the embedded word. We conducted two experiments that used masked priming in combination with lexical decision. In Experiment 1, monomorphemic target words were either preceded by a compound word prime (e.g., textbook-BOOK/textbook-TEXT), a compound-nonword prime (e.g., pilebook-BOOK/textpile-TEXT), a non-compound nonword prime (e.g., pimebook-BOOK/textpime-TEXT) or an unrelated prime (e.g., textjail-BOOK/jailbook-TEXT). The results revealed significant priming effects, not only in the compound word and compound-nonword conditions, but also in the non-compound nonword condition, suggesting that embedded words (e.g., book) were activated independently of whether they occurred in combination with a real morpheme (e.g., pilebook) or a non-morphemic constituent (e.g., pimebook). Priming in the compound word condition was greater than in the two nonword conditions, indicating that participants benefited from the whole-word representation of real compound words. Constituent priming occurred independently of whether the target word was the first or the second embedded constituent of the prime (e.g., textbook-BOOK vs. textbook-TEXT). In Experiment 2, significant priming effects were found for edge-aligned embedded constituents (e.g., pimebook-BOOK), but not for mid-embedded (e.g., pibookme-BOOK) or the outer-embedded constituents (e.g., bopimeok-BOOK), suggesting that edge-alignedness is a key factor determining the activation of embedded words.
DOI: 10.6084/m9.figshare.5797290
title: S. mansoni full co-expression networks as cytoscape files

description: <br>Whole access for navigation on the co-expression networks disclosed in our publication (Vasconcelos et al., 2017 - PMID: 28874839), where we correlated mRNAs and lincRNAs transcriptional patterns across five life-cycle stages/forms, pinpointing biological processes where lncRNAs might act on. One is able to navigate on those networks, visualizing the subclusters of correlated Smp-SmLINCs, and searching for genes and biological processes (GO terms) of interest.1) CoexpNetwork-cor0p8...cys: Figures 6A, 7A and S3 from the aforementioned article.2) CoexpNetwork-cor0p9...cys: Figure S5 from the aforementioned article.
DOI: 10.6084/m9.figshare.5797290.v1
title: S. mansoni full co-expression networks as cytoscape files

description: <br>Whole access for navigation on the co-expression networks disclosed in our publication (Vasconcelos et al., 2017 - PMID: 28874839), where we correlated mRNAs and lincRNAs transcriptional patterns across five life-cycle stages/forms, pinpointing biological processes where lncRNAs might act on. One is able to navigate on those networks, visualizing the subclusters of correlated Smp-SmLINCs, and searching for genes and biological processes (GO terms) of interest.1) CoexpNetwork-cor0p8...cys: Figures 6A, 7A and S3 from the aforementioned article.2) CoexpNetwork-cor0p9...cys: Figure S5 from the aforementioned article.