cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15482/usda.adc/30999649.v1
title: Organic farming impact on soil health indicators across 9 yr of management in a US Midwest Mollisol

description: This dataset contains soil health indicator data across 9-yr (2012-2020) from an experiment evaluating conventional corn-soybean, organic corn-soybean-oat/alfalfa-alfalfa, and an organic perennial pasture near Boone, IA. The soil samples were collected annually and analyzed using standard methods. The soil properties used as soil health indicators were: microbial biomass C, potentially mineralizable C and N, pH, wet-aggregate stability, and concentrations of organic C, total N, inorganic N (NH4 and NO3), P, and K. Such data were collected to answer key farmer questions regarding changes in soil health under organic farming. Data were presented in Ruis et al. (2025), Soil Science Society of America Journal (https://doi.org/10.1002/saj2.20795).
DOI: 10.25934/pr00012517.0
title: Available datapackage for study 'Creating a Sustainable Infrastructure for SARS-CoV-2 Testing at Syringe Exchange Programs'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.15468/dl.gm8g2p
title: Occurrence Download

description: A dataset containing 33140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Odocoileus virginianus",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 33140 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015553-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqx53k
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Odocoileus virginianus",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 97 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015554-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15482/usda.adc/31061641
title: Data from: Differentiation of the foliar microbiomes from co-occurring grass species reflects their recency of invasion

description: These microbiome data and analyses are part of a DNA amplicon sequencing project performed by USDA-ARS scientists at the Foreign-Disease Weed Science Research Unit in Frederick, Maryland. The data characterize foliar endophytic microbiomes from two invasive grass species that co-occur in the same Mid-Atlantic forest environments. One is a recently introduced invasive weed (<i>Oplismenus undulatifolius</i>), and the other a species that has been established for over 100 years (<i>Microstegium vimineum</i>).The data contained here are derived from individual plant leaves collected at two locations in Maryland, USA in September 2023. The sampling locations were 90 km apart but both fell within riparian, deciduous hardwood forests. Replicated observational plots (4 or 5) at each site were separated by 10m. These sampling plots were 1m<sup>2</sup> and arranged to capture overlapping <i>Oplismenus</i> and <i>Microstegium</i> infestations. In all plots, each invasive grass provided approximately 50% groundcover and other plant species accounted for &lt;1% groundcover. The uppermost leaf from 10 randomly selected individuals of each grass species were collected using sterile tools and transported to a laboratory. Leaves were rinsed in sterile water, surface disinfested with diluted bleach, and triple rinsed in sterile water. Leaves were then air dried and split lengthwise. Metagenomic DNA extracts were purified from half leaves using the Zymo Quick-DNA Fungal/Bacterial Kit. A randomly selected subset of seven extracts from each plot and species were ultimately selected for sequencing (n = 63 extracts per grass host). Library preparation and Illumina sequencing were performed at the University of Minnesota Genomics Center. Amplicons of the fungal internal transcribed spacer region of ribosomal DNA (ITS 2 primers: 5.8SR TCGATGAAGAACGCAGCG and ITS4 TCCTCCGCTTATTGATATGC) and of the bacterial 16S ribosomal DNA (16S V4 primers: 515F GTGCCAGCMGCCGCGGTAA and 806R GGACTACHVGGGTWTCTAAT) were sequenced on an Illumina HiSeq 2000 outputting 2x300 bp reads. The resulting DNA sequencing data were deposited with NCBI GenBank (BioProject PRJNA1245354, Samples SAMN47750341-SAMN47750466). Raw sequencing data were processed using QIIME2 v2024.2 (see qiime_procedures.txt), to produce the secondary data files and analysis results contained here. Additional analyses of microbial community diversity and composition were performed using R statistical software. In brief, microbial sequences were contrasted between plant species to compare inferred fungal and bacterial richness, diversity, community dissimilarity and dispersion, and spatial autocorellation (see foliar_eco-evo_analysis.r file for full details). The interpretation of this data set is constrained by a narrow temporal and spatial timeframe, which limits conclusions to the specific environmental conditions and locations observed. See README.txt for additional information about individual file contents.
DOI: 10.15482/usda.adc/31061641.v1
title: Data from: Differentiation of the foliar microbiomes from co-occurring grass species reflects their recency of invasion

description: These microbiome data and analyses are part of a DNA amplicon sequencing project performed by USDA-ARS scientists at the Foreign-Disease Weed Science Research Unit in Frederick, Maryland. The data characterize foliar endophytic microbiomes from two invasive grass species that co-occur in the same Mid-Atlantic forest environments. One is a recently introduced invasive weed (<i>Oplismenus undulatifolius</i>), and the other a species that has been established for over 100 years (<i>Microstegium vimineum</i>).The data contained here are derived from individual plant leaves collected at two locations in Maryland, USA in September 2023. The sampling locations were 90 km apart but both fell within riparian, deciduous hardwood forests. Replicated observational plots (4 or 5) at each site were separated by 10m. These sampling plots were 1m<sup>2</sup> and arranged to capture overlapping <i>Oplismenus</i> and <i>Microstegium</i> infestations. In all plots, each invasive grass provided approximately 50% groundcover and other plant species accounted for &lt;1% groundcover. The uppermost leaf from 10 randomly selected individuals of each grass species were collected using sterile tools and transported to a laboratory. Leaves were rinsed in sterile water, surface disinfested with diluted bleach, and triple rinsed in sterile water. Leaves were then air dried and split lengthwise. Metagenomic DNA extracts were purified from half leaves using the Zymo Quick-DNA Fungal/Bacterial Kit. A randomly selected subset of seven extracts from each plot and species were ultimately selected for sequencing (n = 63 extracts per grass host). Library preparation and Illumina sequencing were performed at the University of Minnesota Genomics Center. Amplicons of the fungal internal transcribed spacer region of ribosomal DNA (ITS 2 primers: 5.8SR TCGATGAAGAACGCAGCG and ITS4 TCCTCCGCTTATTGATATGC) and of the bacterial 16S ribosomal DNA (16S V4 primers: 515F GTGCCAGCMGCCGCGGTAA and 806R GGACTACHVGGGTWTCTAAT) were sequenced on an Illumina HiSeq 2000 outputting 2x300 bp reads. The resulting DNA sequencing data were deposited with NCBI GenBank (BioProject PRJNA1245354, Samples SAMN47750341-SAMN47750466). Raw sequencing data were processed using QIIME2 v2024.2 (see qiime_procedures.txt), to produce the secondary data files and analysis results contained here. Additional analyses of microbial community diversity and composition were performed using R statistical software. In brief, microbial sequences were contrasted between plant species to compare inferred fungal and bacterial richness, diversity, community dissimilarity and dispersion, and spatial autocorellation (see foliar_eco-evo_analysis.r file for full details). The interpretation of this data set is constrained by a narrow temporal and spatial timeframe, which limits conclusions to the specific environmental conditions and locations observed. See README.txt for additional information about individual file contents.
DOI: 10.15785/sbgrid/1207
title: X-Ray Diffraction data from Human Prolyl Edopeptidase - complex with KT-2-75, source of 9Q65 structure

description: Raw X-ray Diffraction Images
DOI: 10.15785/sbgrid/1203
title: X-Ray Diffraction data from Human Prolyl Edopeptidase - complex with KT-1-147, source of 9Q5Z structure

description: Raw X-ray diffraction images
DOI: 10.15785/sbgrid/1213
title: X-Ray Diffraction data from Human Prolyl Edopeptidase - complex with KT-2-186, source of 9Q6X structure

description: Raw X-ray Diffraction Images
DOI: 10.15785/sbgrid/1216
title: X-Ray Diffraction data from Human Prolyl Edopeptidase - complex with KYP2047, source of 9XZZ structure

description: Raw X-ray Diffraction Images
DOI: 10.15785/sbgrid/1212
title: X-Ray Diffraction data from Human Prolyl Edopeptidase - complex with KT-2-197, source of 9Q6L structure

description: Raw X-ray Diffraction Images
DOI: 10.5281/zenodo.18271477
title: Mainz, Gautor-Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.18271476
title: Mainz, Gautor-Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.15785/sbgrid/1206
title: X-Ray Diffraction data from Human Prolyl Edopeptidase - complex with KT-2-59, source of 9Q64 structure

description: Raw X-ray Diffraction Images
DOI: 10.15785/sbgrid/1202
title: X-Ray Diffraction data from Human Prolyl Edopeptidase - complex with YX45, source of 9Q5Y structure

description: Raw diffraction images
DOI: 10.15468/dl.v2crf6
title: Occurrence Download

description: A dataset containing 338350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Bromus hordeaceus L.",
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 338350 records from 2472 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015546-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2024-04.3095624/2561151
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3095625/2561152
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3095627/2561153
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3095640/2561154
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3095643/2561155
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3095644/2561156
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3095646/2561157
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3095656/2561158
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3095658/2561159
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3095659/2561160
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3095662/2561161
title: Data for EMSL Project 51287 from April 2024
DOI: 10.15468/dl.smwbag
title: Occurrence Download

description: A dataset containing 2391 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Artemisia monosperma Delile"
 ]
}

 The dataset includes 2391 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000727-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15114395
title: Dataset and Videos of Retrofitting a Pepper robot with FlowNetwork

description: In the present repository we collect relevant documents and data for the article "Retrofitting a Pepper robot with FlowNetwork". The files are the following:

1- sensors_data_vectors.csv: is the dataset built during the Pepper supervised state training and has 3,000 entries.

2-data_collection.mov: is a video that shpws how data are collected using a WASD input method by the supervising human.

3-dataset_visualization.mov: shows the visual representation of the vector store depicting the sensors reading and the commands send by the human supervisor

4-A set of Python programs that implement the robot's logic and the visualization elements production
DOI: 10.5281/zenodo.15536904
title: Dataset and Videos of Retrofitting a Pepper robot with FlowNetwork

description: In the present repository we collect relevant documents and data for the article "Retrofitting a Pepper robot with FlowNetwork". The files are the following:

1- vector_gaussian_cosine_store.csv: is the dataset built during the Pioneer 3DX supervised state training and has 7,500 entries.

2- sensors_data.csv: is the dataset built during the Pepper supervised state training and has 3,000 entries.

3- P3DX_office_scenario.mp4: navigation video of Pioneer P3DX in the virtual office scenario (speed 4x).

4- P3DX_assembly_line_scenario.mp4: navigation video of Pioneer P3DX in the virtual assembly line scenario (speed 4x).

5- P3DX_office_laboratory.mp4: navigation video of Pioneer P3DX in the virtual labortory scenario (speed 1x).

6- Pepper_office_training.mp4: is a video that shows how data are collected during the training using a WASD input method by the supervising human.

7- dataset_visualization.mov: shows the visual representation of the vector store depicting the sensors reading and the commands send by the human supervisor
DOI: 10.5281/zenodo.15114394
title: Dataset and Videos of Retrofitting a Pepper robot with FlowNetwork

description: In the present repository we collect relevant documents and data for the article "Retrofitting a Pepper robot with FlowNetwork". The files are the following:



vector_gaussian_cosine_store.csv: is the dataset built during the Pioneer 3DX supervised state training and has 7,500 entries.

sensors_data.csv: is the dataset built during the Pepper supervised state training and has 3,000 entries.

P3DX_office_scenario.mp4: navigation video of Pioneer P3DX in the virtual office scenario (speed 4x).

P3DX_assembly_line_scenario.mp4: navigation video of Pioneer P3DX in the virtual assembly line scenario (speed 4x).

P3DX_office_laboratory.mp4: navigation video of Pioneer P3DX in the virtual labortory scenario (speed 1x).

P3DX_greedy_tests_scenario.mp4: navigation video of Pioneer P3DX in the virtual assembly line scenario and greedy algorithm version (speed 4x)

Pepper_office_training.mp4: is a video that shows how data are collected during the training using a WASD input method by the supervising human.

dataset_visualization.mov: shows the visual representation of the vector store depicting the sensors reading and the commands send by the human supervisor to the Pepper robot in a real scenario

dataset_visualization_virtual.mp4: shows the visual representation of the vector store depicting the sensors reading and the commands send by the human supervisor to the P3DX robot in a virtual scenario

Navigation_sequence_diagram.png

Training_sequence_diagram.png
DOI: 10.5281/zenodo.15552337
title: Dataset and Videos of Retrofitting a Pepper robot with FlowNetwork

description: In the present repository we collect relevant documents and data for the article "Retrofitting a Pepper robot with FlowNetwork". The files are the following:



vector_gaussian_cosine_store.csv: is the dataset built during the Pioneer 3DX supervised state training and has 7,500 entries.

sensors_data.csv: is the dataset built during the Pepper supervised state training and has 3,000 entries.

P3DX_office_scenario.mp4: navigation video of Pioneer P3DX in the virtual office scenario (speed 4x).

P3DX_assembly_line_scenario.mp4: navigation video of Pioneer P3DX in the virtual assembly line scenario (speed 4x).

P3DX_office_laboratory.mp4: navigation video of Pioneer P3DX in the virtual labortory scenario (speed 1x).

P3DX_greedy_tests_scenario.mp4: navigation video of Pioneer P3DX in the virtual assembly line scenario and greedy algorithm version (speed 4x)

Pepper_office_training.mp4: is a video that shows how data are collected during the training using a WASD input method by the supervising human.

dataset_visualization.mov: shows the visual representation of the vector store depicting the sensors reading and the commands send by the human supervisor to the Pepper robot in a real scenario

dataset_visualization_virtual.mp4: shows the visual representation of the vector store depicting the sensors reading and the commands send by the human supervisor to the P3DX robot in a virtual scenario

Navigation_sequence_diagram.png

Training_sequence_diagram.png
DOI: 10.15468/dl.btuksy
title: Occurrence Download

description: A dataset containing 305439 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leontodon hispidus L."
 ]
}

 The dataset includes 305439 records from 1429 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008752-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dm7vrc
title: Occurrence Download

description: A dataset containing 2008 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is National Herbarium of São Tomé and Principe (STPH)"
 ]
}

 The dataset includes 2008 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014869-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/12f-gfw-jxv
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/33w-4tk-18m
title: Voacanga Thouars

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0eq-snf-xkk
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c3s-zyn-2r2
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tjl-9vs-12p
title: Fagus L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ver-xb9-9dj
title: Lepidophyllum Cass.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/87l-wp1-jns
title: Orthiopteris Copel.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/aaw-twz-v4j
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9bj-rh8-j0x
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cbj-zkf-x8k
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d4q-pfg-l2v
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/19h-pjx-dqf
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4yz-2fv-rb2
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t6b-mxj-663
title: †Anthracosia W. King, 1856

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y6b-hcy-f4w
title: Voacanga Thouars

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v35-5cc-af8
title: Maianthemum F.H.Wigg.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s0h-3fk-rs4
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xtp-cj0-3cn
title: Orthiopteris Copel.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1s8-v5k-l0q
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3a0-1j6-vx4
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yze-eee-ch1
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0kc-p6n-a5t
title: Fagus L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nj9-3s2-zax
title: Taxodium Rich.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1x5-tvr-8ew
title: †Anthracosia atra (Trueman, 1929)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sjn-pmr-b6e
title: Orthiopteris Copel.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1q4-5qt-3aq
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g3w-qd5-9kc
title: Voacanga Thouars

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jhm-q3a-sf0
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/la9-jls-0xw
title: Orthiopteris Copel.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nya-bve-8jg
title: †Cycloclypeus communis Martin, 1880

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.