cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3863562.v3
title: yorku.grassland.woodlot.sept27-2016.csv

description: On Tuesday, September 27<sup>th</sup>, 2016, at 3:00-4:30pm, an experiment testing the total number of birds, number of species, and frequency of that species between the Danby Woodlot and the Grasslands was carried out. The weather was 17 degrees Celsius; the wind speed was 18 km/h, and mostly cloudy skies. This experiment was conducted at the Danby Woodlot and Grasslands area, located at the York University Keele Campus (43.7 degrees North, 75.9 degrees West), between York Blvd and Keele St. It was predicted that there would be a greater number of birds in the Woodlot than the Grasslands. It was hypothesized that the frequency of seeing different bird species would be greater in the Woodlot because birds have their shelter and food in trees, which is necessary for different bird species to continue thriving. This experiment was carried out by placing a belt transect that was measured to be 25m, and waiting 5 minutes to observe the total number of birds, the total number of species, and the frequency of the species within the transect. This was done for a total of 5 times in the Woodlot area, and a total of 5 times in the Grassland area. 45 minutes were both equally spent in the Grassland and Woodlot area. The hypothesis was proven to be correct; there were more birds in total, more species, and the frequency of birds in a specific species was greater in the Woodlot area than the Grasslands, but the confounding variables that negatively affected the amount of birds that were seen while the experiment was being carried out were the wind and cool weather.
DOI: 10.17632/836w392t82
title: Settlements, population, road network, and land cover on the island of Cyprus in the 1960s. 

description: The dataset consists of four geospatial layers. The coastal shape, the road network and the land cover/use derived by manual digitization from the topographical map of Cyprus published in 1969 by the U.S. Army Map Service (https://www.loc.gov/item/2017588191/). It was prepared in 25 sheets at a scale of 1:50,000 using the ED50 / UTM zone 36N reference system (EPSG: 23036). The mean rectification accuracy of the 25 sheets using a first-order affine transformation was 5.5 m. Additionally the dataset includes the layer of the populated places described in the Census of 1960 accompanied by its population attributes. The dataset covers the entire area of the island of Cyprus.
DOI: 10.6084/m9.figshare.13697329.v1
title: R scripts and data files

description: The uploaded files on Figshare include the data and R scripts for data filtering, the GAM/qGAMs and Random Forest analyses, implemented in the manuscript Wagner et al. (2021) <b>Alien plant invasion hotspots and invasion debt in European woodlands.</b><br> Not included are the extraction and preparation of predictor and response variables (given that some variables had to be prepared in QGIS and ArcGIS), the R script for preparing Fig. 1 (map) and data summary tables (since these can be easily produced). These excluded files, however, can be requested from the first author (viktoria.wagner@ualberta.ca). <br> The data include only the most essential data from the European Vegetation Archive. To retrieve more information for plots, including species abundances, permission must be requested from the individual Custodians (for more information, contact chytry@sci.muni.cz).<br>Check the Readme.txt file for meta-data.
DOI: 10.6084/m9.figshare.24192480.v1
title: c3d files of 3D full-body gait kinematics, kinetics and EMG of 138 able-bodied adults

description: The C3D file contains anthropometric measurements (e.g., body height, body mass, leg length, …), 3D kinematics (i.e., 3D marker trajectories, 3D full-body joint angles, and 3D center of mass), kinetics (i.e., 3D ground reaction forces, 3D joint forces, 3D joint moments and 1D joint power), and unfiltered EMG. All calculated are based on the Full body Plug-in Gait model and standard processing pipelines, further information is provided in the online documentation of Vicon
DOI: 10.6084/m9.figshare.5122588.v1
title: Supplementary Material for: Her-2/neu Overexpression Due to Polysomy 17 in Breast Cancer: Molecular Testing to Guide Therapeutic Options

description: <i>Background:</i> Fluorescent in situ hybridization (FISH) equivocal results for Her-2/neu still pose a diagnostic dilemma in oncology practice. In this study, we evaluate if Her-2/neu mRNA expression is an alternative to FISH for detecting Her-2/neu positivity. <i>Patients and Methods:</i> Archival paraffin blocks of 54 breast cancer patients were analyzed for Her-2/neu status using immunohistochemistry (IHC), FISH, and Her-2/neu gene expression using mRNA. <i>Results:</i> There was a 100% positive agreement and 64.7% negative agreement of Her-2/neu mRNA expression with respect to the reference standard (FISH), with the kappa value for agreement being 0.36. mRNA levels correlated positively and strongly with FISH ratio and IHC positivity. For Her-2/neu mRNA expression, Her-2/neu copy number was a significant predictor indicating that mRNA expression is independent of polysomy status. <i>Conclusions:</i> Her-2/neu mRNA expression may help tide over ambiguity posed by polysomy and FISH equivocal samples.
DOI: 10.6084/m9.figshare.22818398.v1
title: DATA.xlsx

description: The sheets contain all patients' information of bone widths,arch widths and angles,which are measured for two different times.
DOI: 10.6084/m9.figshare.28956581.v1
title: Data for: Greater pollination generalization is not associated with reduced constraints on corolla shape in Antillean plants

description: Supplementary data for:Joly, S, F Lambert, H Alexandre, J Clavel, É Léveillé-Bourret, JL Clark. 2018. Greater pollination generalization is not associated with reduced constraints on corolla shape in Antillean plants. Evolution 72(2): 244-260.The dataset contains R scripts to run the analyses presented in the paper, the pictures of the flowers analyzed, and the raw data files for geometric morphometric analyses.
DOI: 10.17632/fj93rrfv2y
title: Medicinal Plant Identification Dataset

description: • In our surroundings, there are various types of plants. In our daily lives, we use products derived from these plants in many ways. We depend on a vast kingdom of plants to meet all the needs of life, including food, clothing, shelter, education, and healthcare. We have already gained a lot of knowledge about this relationship. We have seen or heard that when children have a cold or cough at home, they are given a mixture of tulsi (holy basil) leaves and a few drops of honey. As a result, their cold and cough subside, and they feel relieved. If someone suddenly gets a cut on any part of their body, washing the wound with the juice of the aloe vera leaf or applying a poultice of durba grass can be beneficial. This helps stop bleeding, and within two to three days, the wound dries up, and the person recovers. The plants in our environment that are used for the relief or cure of diseases are called medicinal plants. • At one time, Bangladesh was rich in medicinal plants. Fields, riverbanks, roadsides, and forests were abundant with numerous medicinal plants. Due to the increase in population, the diverse use of land has risen. Additionally, due to ignorance, negligence, and lack of attention, the primary habitat of these medicinal plants, natural forest land, has decreased. Consequently, valuable tree resources like these have been diminished. Many species have already become extinct. Despite this, our country still has a sufficient number of medicinal plants scattered across remote and less-explored areas. We are not familiar with all of them. It is crucial for us to be aware of these medicinal plants, recognize them, and understand their uses and properties. As a result, we can play a significant role in the holistic well-being of the general population in our country by contributing to the management and cure of various diseases. • This medicinal plant identification dataset would likely consist of a collection of images and associated metadata related to various medicinal plants. The dataset would serve as a resource for developing and training machine learning models for the automatic identification and classification of medicinal plants. • Six distinct kinds of medicinal plants are shown in this large dataset, which can be used to develop machine vision-based techniques: Arjun Leaf, Curry Leaf, Marsh Pennywort Leaf, Mint Leaf, Neem Leaf, and Rubble Leaf. • In reality, 1380 images of medicinal plants were initially collected from the field. Subsequently, to increase the quantity of data points, various image processing techniques were applied, such as shifting, flipping, zooming, shearing, brightness enhancement, and rotation, resulting in a total of 9660 augmented images derived from the original images.
DOI: 10.6084/m9.figshare.11374449.v1
title: Dataset_Reprod

description: Dataset of CCT, Ishihara and Lanthony.
DOI: 10.6084/m9.figshare.1540738.v1
title: Image Classification for "Cuttlefish Sepia officinalis preferentially respond to bottom rather than side stimuli when not allowed adjacent to tank walls"

description: This table contains the classification scheme for the cuttlefish images analyzed in the article: "Cuttlefish Sepia officinalis preferentially respond to bottom rather than side stimuli when not allowed adjacent to tank walls" In the table, the bottom and side stimulus patterns as well as the percent mottled, percent disruptive, and percent uniform classification of each image are given. Each row corresponds to a different image.
DOI: 10.6084/m9.figshare.17698304.v2
title: Fungus gnat pollination in Aspidistra

description: Appendix S2:Visiting frequency of fungus gnat on Aspidistra longipetala during 14 observation days. Observations were performed under fair weather conditions between 07:30 and 21:30 h during March to May in 2016, 2018, and 2019.<br>Data S1: The COI (mitochondrial cyto-chrome oxidase I) sequences of fungus gnats sampled from <i>Aspidistras longipetala</i> and other relative species using to identify pollinator and build the phylogenetic tree.<br>
DOI: 10.6084/m9.figshare.27524004.v1
title: OPTIMIZATION OF ADMINISTRATIVE PROCESSES THROUGH THE IMPLEMENTATION OF QUALITY MANAGEMENT SYSTEMS: A CASE STUDY IN THE MANUFACTURING SECTOR

description: A documentary review was carried out on the production and publication of research papers related to the study nowledgenowledgeof the variable Administrative Processes, Quality Management Systems and Manufacturing Sector. The purpose of the bibliometric analysis or.
DOI: 10.6084/m9.figshare.22490920.v2
title: Genome assembly and annotation files of Nitraria sibirica

description: <strong>Genome sequence and salinity adaptation of the desert shrub </strong><em><strong>Nitraria sibirica</strong></em><strong> (Nitrariaceae, Sapindales)</strong>
DOI: 10.6084/m9.figshare.27683343.v1
title: <b>Enhanced Markov-FLUS Model Incorporating Spatial Distribution Characteristics</b>

description: The traditional Markov-FLUS model for land use prediction primarily emphasizes quantity changes and spatial distribution of land types, neglecting the influence of their inherent spatial characteristics on prediction precision. This paper introduces an innovative approach by designing shape control parameters and developing an enhanced Markov-FLUS model. The model integrates artificial neural networks to capture the relationship between land type occurrence probability and driving factors, incorporating common points, common edges, distance, and aggregation parameters alongside a cellular automata model. Using the Yellow River basin as a case study, the paper compares the model's simulation performance before and after enhancement, focusing on the land types with the most and least improvement. Results indicate that the refined model achieves a superior fitness function value in simulating land use within the Yellow River basin.
DOI: 10.17632/yzyj46xpmy
title: Dataset of Distribution Transformers at Cauca Department (Colombia)

description:  Dataset contains 16.000 electric power distribution transformers from Cauca Department (Colombia).
They are distributed in rural and urban areas of 42 municipalities. The information covers
2019 and 2020 years, has 6 categorical variables and 5 continuous variables. First ones correspond to:
location, self-protected, removable connector, criticality according to ceraunic level, client and
installation type. Second ones are transformer power, burn rate, users number, unsupplied electricity
and secondary lines length.
DOI: 10.6084/m9.figshare.1246707.v1
title: 48 h incubation of HeLa cells in medium only (a control)

description: HeLa cells were incubated for 48 h in full medium (10% FBS, DMEM, 1% NEAA). The medium was then removed and cells were washed three times with warm 1 x PBS. The cells were then fixed and processed for TEM. Three different cell sections were imaged by TEM (10 images).
DOI: 10.6084/m9.figshare.14260430.v7
title: Norfish 17 Iceland Cod Landings 1520–1871

description: The Icelandic Fisheries were highly productive and drew attention from both domestic and various foreign markets. While the gear deployed and the methods used for fishing did not vary significantly during the early modern period, there were several influences on the industry that impacted either negatively or positively. For instance, human intervention in the standard fishing practices, such as acts of war, market pressures, etc. led to variability in the total catches that were made on an annual basis. Natural influences were an issue as well; fish migration and stock levels, weather/climate conditions, etc. played their part in the types of inconsistencies that pervaded the era.
DOI: 10.6084/m9.figshare.20293992.v1
title: Reference compounds for characterizing cellular injury in high-content cellular morphology assays

description: This data accompanies the manuscript "Reference compounds for characterizing cellular injury in high-content cellular morphology assays". <br> Abstract: Robust, generalizable approaches to identify compounds efficiently with undesirable mechanisms of action in complex cellular assays remain elusive. Such a process would be useful for hit triage during high-throughput screening and, ultimately, predictive toxicology during drug development. We generated cell painting and cellular health profiles for 218 prototypical cytotoxic and nuisance compounds in U-2 OS cells in a concentration-response format. A diversity of compounds causing cellular damage produced bioactive cell painting morphologies, including cytoskeletal poisons, genotoxins, nonspecific electrophiles, and redox-active compounds. Further, we show that lower quality lysine acetyltransferase inhibitors and nonspecific electrophiles can be distinguished from more selective counterparts. We propose that the purposeful inclusion of cytotoxic and nuisance reference compounds such as those profiled in this <em>Resource</em> will help with assay optimization and compound prioritization in complex cellular assays like cell painting. <br> This dataset is composed of four parts: (1) List of extracted features from cell painting experiments. (2) Processed live-cell imaging data. (3) Processed intracellular glutathione data. (4) ALARM NMR and UPLC-MS data for KAT inhibitors.
DOI: 10.6084/m9.figshare.23531303.v1
title: Supplementary Tables from 300 Million years of coral treaders (Insecta: Heteroptera: Hermatobatidae) back to ocean in the phylogenetic context of Arthropoda

description: Among hundreds of insect families, Hermatobatidae (commonly known as coral treaders) is one of the most unique. They are small, wingless predaceous bugs in the suborder Heteroptera. Adults are almost black in colour, measuring about 5 mm in body length and 3 mm in width. Thirteen species are known from tropical coral reefs or rocky shores, but their origin and evolutionary adaptation to their unusual marine habitat were unexplored. We report here the genome and metagenome of <i>Hermatobates lingyangjiaoensis</i>, hitherto known only from its type locality in the South China Sea. We further reconstructed the evolutionary history and origin of these marine bugs in the broader context of Arthropoda. The dated phylogeny indicates that Hexapoda diverged from their marine sister groups approximately 498 Ma and that Hermatobatidae originated 192 Ma, indicating that they returned to an oceanic life some 300 Myr after their ancestors became terrestrial. Their origin is consistent with the recovery of tropical reef ecosystems after the End-Triassic mass extinction, which might have provided new and open niches for them to occupy and thrive. Our analyses also revealed that both the genome changes and the symbiotic bacteria might have contributed to adaptations necessary for life in the sea.
DOI: 10.6084/m9.figshare.5126470.v1
title: Supplementary Material for: Coexpression of SOX10/CD271 (p75<sup>NTR</sup>) and β-Galactosidase in Large to Giant Congenital Melanocytic Nevi of Pediatric Patients

description: <b><i>Background:</i></b> Congenital melanocytic nevi (CMNs) are melanocytic neoplasms that can transform into melanoma. However, this development is impeded in the majority of cases and mostly affects patients with large or giant CMNs. <b><i>Methods:</i></b> To elucidate mechanisms that keep CMNs from malignant transformation, CMN tissue biopsies were investigated for p-ERK and senescence markers by immunohistochemistry and for SOX10/CD271 (p75<sup>NTR</sup>) by immunofluorescence. CMN cells were cultivated, and MTT assays were performed for evaluating cell viability. Mutation status for NRAS and BRAF was performed by real-time PCR. <b><i>Results:</i></b> 13 CMNs (from patients aged 0.5-11.8 years, mean: 2.7) showed immunoreactivity for SOX10/CD271 (p75<sup>NTR</sup>) in 34.2%. p-ERK was immunoreactive in 80% (4/5); β-galactosidase was significantly stronger expressed in CMNs compared to melanocytic nevi of patients over 70 years (p = 0.0085). The 5 CMN cultures were immunoreactive for SOX10/CD271 (p75<sup>NTR</sup>) in 36.7%. By silencing SOX10 by siRNA in 2 CMN cell cultures, cell viability decreased significantly. NRAS<sup>Q61K</sup> mutation was found in 91.7% (11/12) and BRAF<sup>V600E</sup> in 6.3% of all analyzable CMNs (1/16). <b><i>Conclusions:</i></b> Oncogene-induced senescence might prevent malignant transformation through activation of the mitogen-activated protein kinase pathway. SOX10 is necessary for the viability of human CMN cell cultures and may be responsible for clinical changes during aging. © 2014 S. Karger AG, Basel
DOI: 10.17632/99m44kn43w
title: Evaluation of engineered CRISPR/Cas-mediated systems for site-specific RNA editing. Marina et al.

description: Uncropped Western blot scans and total FACS data used for plotting.
DOI: 10.6084/m9.figshare.20789191.v4
title: COCO-C AND BDD-C

description: This dataset is coco corruption and bdd corruption. This is the supplementary material for the paper " <strong>Benchmarking Object Detection Robustness against Real-World Corruptions</strong> ". <br>
DOI: 10.6084/m9.figshare.3487391.v1
title: Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice. [CODE: example files]

description: This repository contains example ChIP-, MeDIP- and RNA-seq samples to illustrate how to run the analyses regarding those samples, as described by the run_scientific_data_analysis.pdf in the scripts repository (https://dx.doi.org/10.6084/m9.figshare.3490613). The files are tab-delimited with sample names in one column and links to SRA files from the GEO dataset repository in the second column. The file names correspond to the data type of the samples, i.e. "sra_chip.txt" contains ChIP-seq samples, "sra_medip.txt" contains MeDIP-seq samples and "sra_rna.txt" contains RNA-seq samples.<br>
DOI: 10.6084/m9.figshare.24547210.v2
title: mRNA vaccine injection site responses

description: Injection site response single-cell transcriptome datasets
DOI: 10.6084/m9.figshare.24710961.v1
title: The global speciation continuum of the cyanobacterium <i>Microcoleus</i>

description: <b>Abstract:</b>Speciation is a continuous process driven by genetic, geographic, and ecological barriers to gene flow. It is widely investigated in multicellular eukaryotes, yet we are only beginning to comprehend the relative importance of mechanisms driving the emergence of barriers to gene flow in microbial populations. Here, we explored the diversification of the nearly ubiquitous soil cyanobacterium <i>Microcoleus</i>. Our dataset consisted of 291 genomes, of which 202 strains and eight herbarium specimens were sequenced for this study. We found that <i>Microcoleus vaginatus</i> represents a global speciation continuum of at least 12 lineages, which radiated during Eocene/Oligocene aridification and exhibit varying degrees of divergence and gene flow. The lineage divergence has been driven by selection, geographical distance, and the environment. Evidence of genetic divergence and selection was widespread across the genome, but we identified regions of exceptional differentiation containing candidate genes associated with stress response and biosynthesis of secondary metabolites.Alignments provided here were used in the paper "The global speciation continuum of the cyanobacterium <i>Microcoleus</i>" by Stanojković, A., Skoupý, S., Johannesson, H. & Dvořák, P.
DOI: 10.6084/m9.figshare.29104469.v1
title: DATA.sav

description: This study aimed to evaluate the psychometric properties of the Persian version of the Gambling Symptom Assessment Scale (G-SAS), a self-report tool designed to assess the severity of gambling symptoms across cognitive, emotional, and behavioral domains, among individuals with gambling disorder in Iran for clinical use
DOI: 10.6084/m9.figshare.90210.v1
title: Cell concentration and fluorescence

description: These data represent a compilation of microscopic cell counts and the corresponding in vivo fluorescence. The cells in question are mostly planktonic diatoms with one dinoflagellate. The samples were collected in the context of oyster (Crassostrea virginica) grazing experiments described in Thessen, A.E., Q. Dortch, T.M. Soniat and G.J. Doucette (2009) Crassostrea virginica grazing on toxic and non-toxic diatoms. Toxicon.doi:10.1016/j.toxicon.2009.10.011. The Pseudo-nitzschia multiseries correlation is particularly bad because of a fungal infection in the culture.
DOI: 10.17632/9y2cv8mnsz
title: Dataset Factors Influencing User Engagement of Generation Z Instagram Users in Jakarta, Indonesia

description: Dataset ini berisi hasil survei kuantitatif yang digunakan dalam penelitian berjudul "Factors Influencing User Engagement of Generation Z Instagram Users in Jakarta, Indonesia." Survei dilakukan terhadap responden Generasi Z di wilayah DKI Jakarta yang menggunakan Instagram, dengan tujuan untuk menganalisis faktor utama yang mempengaruhi user engagement Instagram melibatkan system quality, user satisfaction, dan positive emotions.

Dataset mencakup:
- Data demografis responden (usia dan jenis kelamin)
- Hasil tanggapan terhadap indikator penelitian (dalam bentuk skala Likert 1–5)
- Pertanyaan terbuka terkait preferensi pengguna terhadap fitur dan konten di Instagram

Data dikumpulkan secara anonim dan hanya digunakan untuk keperluan akademik. File tersedia dalam format .xlsx.
DOI: 10.6084/m9.figshare.28564235.v1
title: Scripts and data from Beyond Perfect Synchrony: Shared Interpersonal Rhythmic Timing Enhances Self-Other Merging Judgements

description: Analysis and plotting R scripts used in both experiments with R workspaces complete with dataframes and results.
DOI: 10.6084/m9.figshare.6476426.v1
title: Supplementary material for Fibres of Failure

description: Supplementary material for the paper Fibres of Failure.