cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.rdxvyh
title: Occurrence Download

description: A dataset containing 9068 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((16.72878 47.85537,16.68096 47.86144,16.63606 47.85586,16.62343 47.82721,16.60401 47.75172,16.68655 47.7391,16.68727 47.74541,16.69723 47.75075,16.70208 47.76434,16.69698 47.77163,16.70184 47.78789,16.70912 47.79105,16.70499 47.79517,16.70572 47.80343,16.70184 47.80367,16.70038 47.79566,16.6965 47.79809,16.69601 47.80731,16.71155 47.80731,16.7317 47.83523,16.72878 47.85537))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 9068 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073474-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zftfb7
title: Occurrence Download

description: A dataset containing 516 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "TaxonKey is Dipteryx alata Vogel"
 ]
}

 The dataset includes 516 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0293893-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h68gbj
title: Occurrence Download

description: A dataset containing 3546 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ambrosia trifida L."
 ]
}

 The dataset includes 3546 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009051-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dha2se
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia madinahensis Fayed & Al-Zahrani"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000836-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jkxmea
title: Occurrence Download

description: A dataset containing 2341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((4.5 -35.51792,61.03126 -35.51792,61.03126 38.1069,4.5 38.1069,4.5 -35.51792))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Drepanorhynchus reichenowi Fischer, 1884"
 ]
}

 The dataset includes 2341 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0293903-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ejc6oq
title: Occurrence Download

description: A dataset containing 3503 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CSIRO, Cruise SS200705, Benthic Biodiversity, Northwest Australia, 2007"
 ]
}

 The dataset includes 3503 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009051-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ms5uyd
title: Occurrence Download

description: A dataset listing the 36076 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Reptilia"
 ]
}

 The dataset's 36076 records were derived from 3180 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0293908-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b9hz4d
title: Occurrence Download

description: A dataset containing 1139666 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cydnus dignus Förster, 1891, Larus glaucodes Meyen, 1834, Falco biarmicus Temminck, 1825, Perisoreus infaustus (Linnaeus, 1758), Erythropygia galactotes (Temminck, 1820), Acrocephalus agricola (Jerdon, 1845), Dendrocopos major (Linnaeus, 1758))",
 "Continent is one of (Europe)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1139666 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0310751-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yc6k6s
title: Occurrence Download

description: A dataset containing 4261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chamaecrista desvauxii (Collad.) Killip"
 ]
}

 The dataset includes 4261 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086007-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e4msdj
title: Occurrence Download

description: A dataset containing 14239 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "OccurrenceStatus is Present",
 "TaxonKey is Alligator mississippiensis (Daudin, 1801)"
 ]
}

 The dataset includes 14239 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0191502-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s6zidk
title: Occurrence Download

description: A dataset containing 1248 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Argentina",
 "Country is Chile",
 "Country is Bolivia (Plurinational State of)"
 ]
 },
 "Year 2000-2018",
 "TaxonKey is Calidris melanotos (Vieillot, 1819)"
 ]
}

 The dataset includes 1248 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003944-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s5aeah
title: Occurrence Download

description: A dataset containing 4069 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CAN.3_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Reptilia"
 ]
}

 The dataset includes 4069 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004878-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sdtxdd
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Loxodonta Cuvier, 1825"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086009-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q4va9j
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Banisteriopsis caapi (Spruce ex Griseb.) C.V.Morton"
 ]
}

 The dataset includes 113 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003944-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.juut8o
title: Occurrence Download

description: A dataset containing 4932145 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Colombia"
 ]
}

 The dataset includes 4932145 records from 1529 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005968-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2jl218
title: CCDC 2341059: Experimental Crystal Structure Determination

description: Related Article: Vanitha R. Naina, Sebastian Gillhuber, Christian Ritschel, Da Jin, Shubham, Sergei Lebedkin, Claus Feldmann, Florian Weigend, Manfred M. Kappes, Peter W. Roesky|2025|Angew.Chem.,Int.Ed.|64|e202414517|doi:10.1002/anie.202414517
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jl229
title: CCDC 2341060: Experimental Crystal Structure Determination

description: Related Article: Vanitha R. Naina, Sebastian Gillhuber, Christian Ritschel, Da Jin, Shubham, Sergei Lebedkin, Claus Feldmann, Florian Weigend, Manfred M. Kappes, Peter W. Roesky|2025|Angew.Chem.,Int.Ed.|64|e202414517|doi:10.1002/anie.202414517
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jl23b
title: CCDC 2341061: Experimental Crystal Structure Determination

description: Related Article: Vanitha R. Naina, Sebastian Gillhuber, Christian Ritschel, Da Jin, Shubham, Sergei Lebedkin, Claus Feldmann, Florian Weigend, Manfred M. Kappes, Peter W. Roesky|2025|Angew.Chem.,Int.Ed.|64|e202414517|doi:10.1002/anie.202414517
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jl24c
title: CCDC 2341062: Experimental Crystal Structure Determination

description: Related Article: Vanitha R. Naina, Sebastian Gillhuber, Christian Ritschel, Da Jin, Shubham, Sergei Lebedkin, Claus Feldmann, Florian Weigend, Manfred M. Kappes, Peter W. Roesky|2025|Angew.Chem.,Int.Ed.|64|e202414517|doi:10.1002/anie.202414517
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kq7fz
title: CCDC 2374861: Experimental Crystal Structure Determination

description: Related Article: Vanitha R. Naina, Sebastian Gillhuber, Christian Ritschel, Da Jin, Shubham, Sergei Lebedkin, Claus Feldmann, Florian Weigend, Manfred M. Kappes, Peter W. Roesky|2025|Angew.Chem.,Int.Ed.|64|e202414517|doi:10.1002/anie.202414517
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2n5d6g
title: CCDC 2448045: Experimental Crystal Structure Determination

description: Related Article: Z. Hu,  Q.-W. Yang,  Y.-C. Zhou,  Y.-L. Ren,  Y. Lei|2025|J.Struct.Chem.|66|1873|doi:10.1134/S0022476625090094
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2n4w90
title: CCDC 2447552: Experimental Crystal Structure Determination

description: Related Article: Jungwoo Hong, Jaewook Kim, Jintaek Gong, Seoneun Jeong, Yi Sak Park, Sung Hyun Yoo, Jin Kim, Hee-Seung Lee|2025|J.Am.Chem.Soc.|||doi:10.1021/jacs.5c13858
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2n4wyn
title: CCDC 2447572: Experimental Crystal Structure Determination

description: Related Article: Jungwoo Hong, Jaewook Kim, Jintaek Gong, Seoneun Jeong, Yi Sak Park, Sung Hyun Yoo, Jin Kim, Hee-Seung Lee|2025|J.Am.Chem.Soc.|||doi:10.1021/jacs.5c13858
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.13897183
title: Data Analysis Scripts Bovine Myoblasts

description: Data analysis scripts for the proteome and transcriptome analysis of bovine myoblasts.

Raw & processed mass spectrometry data for proteome analysis can be accessed under PXD052959.
DOI: 10.5281/zenodo.11546949
title: Data Analysis Scripts Bovine Myoblasts

description: Data analysis scripts for the proteome and transcriptome analysis of bovine myoblasts.

Raw & processed mass spectrometry data for proteome analysis can be accessed under PXD052959.
DOI: 10.5281/zenodo.17641420
title: MGC-BioSB-Spatial-Omics-Analysis-2025

description: Preprocessed public datasets used in the MGC/BioSB Spatial Omics Analysis course 2025

 

GitHub: https://github.com/mahfouzlab/MGC-BioSB-Spatial-Omics-Analysis-2025
DOI: 10.5281/zenodo.17641419
title: MGC-BioSB-Spatial-Omics-Analysis-2025

description: Preprocessed public datasets used in the MGC/BioSB Spatial Omics Analysis course 2025

 

GitHub: https://github.com/mahfouzlab/MGC-BioSB-Spatial-Omics-Analysis-2025
DOI: 10.5281/zenodo.17724119
title: Classification model training data for LabelChecker pipeline

description: These datasets were used to train two separate classification models as a demonstration of machine learning applications in the manuscript "Pipeline for FlowCam data processing with modular open-source software and optional machine learning classification" (under review).

Folder and file names in both datasets denote <enclosure number>_<date>_<magnification>_<techinal replicate>

SYKE dataset

Integrated plankton samples collected from indoor experimental enclosures. Water in the enclosures was collected from the Bay of Finland.

FlowCam runs collected with a FlowCam VS and VisualSpreadsheet v4.19.3. The instrument was equipped with a 100 µm flow cell and a 10x objective lens. Samples were run for 10 minutes in the AutoImage mode.  

LakeLab dataset

Integrated epilimlion plankton samples collected from in situ experimental enclosures in Lake Stechlin, Germany.

FlowCam runs collected with a FlowCam CYANO 8000 series and VisualSpreadsheet v4.15.1. The instrument was equipped with a 300 µm flow cell and a 4x objective lens. Samples were run for 5 minutes in the AutoImage mode.
DOI: 10.5281/zenodo.17724118
title: Classification model training data for LabelChecker pipeline

description: These datasets were used to train two separate classification models as a demonstration of machine learning applications in the manuscript "Pipeline for FlowCam data processing with modular open-source software and optional machine learning classification" (under review).

Folder and file names in both datasets denote <enclosure number>_<date>_<magnification>_<techinal replicate>

SYKE dataset

Integrated plankton samples collected from indoor experimental enclosures. Water in the enclosures was collected from the Bay of Finland.

FlowCam runs collected with a FlowCam VS and VisualSpreadsheet v4.19.3. The instrument was equipped with a 100 µm flow cell and a 10x objective lens. Samples were run for 10 minutes in the AutoImage mode.  

LakeLab dataset

Integrated epilimlion plankton samples collected from in situ experimental enclosures in Lake Stechlin, Germany.

FlowCam runs collected with a FlowCam CYANO 8000 series and VisualSpreadsheet v4.15.1. The instrument was equipped with a 300 µm flow cell and a 4x objective lens. Samples were run for 5 minutes in the AutoImage mode.
DOI: 10.15468/dl.u6v85x
title: Occurrence Download

description: A dataset containing 58091 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helicoverpa armigera"
 ]
}

 The dataset includes 58091 records from 442 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014017-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5gmwv8
title: Occurrence Download

description: A dataset containing 1604 records in GBIF matching the query:
SELECT
 "year",
 datasetname,
 COUNT(*) occurrences
FROM
 occurrence
WHERE
 occurrence.datasetkey = 'f1c4df18-12d6-40cb-ab51-5bb0d7f08d6e'
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND occurrence."year" IS NOT NULL
GROUP BY
 occurrence."year",
 occurrence.datasetname

 The dataset's 1604 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014048-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xg9q68
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Bombus pyrosoma",
 "Year 1981-2024"
 ]
}

 The dataset includes 98 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014053-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24342/80f6110a-818f-4a76-a991-24c34934c678
title: Collaboration through big data and open science

description: This dataset has been developed as part of the project funded by European Union’s Horizon 2020 Research and Innovation Programme under grant agreement No. 693651, Science2Society. The dataset relates to the case study that examines how a Foundation could open its database for the benefit of open science and open innovation. 

The dataset features interview notes with the database owners (3), potential users (3) and open science experts (2) that have given permission to publish the notes. 

Licence: CC BY
DOI: 10.17026/ar/eth5a3
title: Plangebied Inrichting Peizerdiep, gemeente Noordenveld
title: Bureauonderzoek Archeologie (AAR 468) Prolander

description: &lt;p&gt;In opdracht van Prolander heeft Arcadis Nederland een bureauonderzoek archeologie uitgevoerd voor de herinrichting van het Peizerdiep. Dit gebied valt onder het deelprogramma Noordwest (Programma Natuurlijk Platteland, PNP) waar de provincie Drenthe en Prolander werken aan verschillende natuurontwikkelingsopgaven in het kader van het Natuur Netwerk Nederland (NNN). De planvorming voor het Peizerdiep (en de Broekenloop) zal via een brede gebiedsanalyse en een variantenstudie leiden tot een integraal schetsontwerp. Het schetsontwerp wordt door Prolander gemaakt met betrokken partijen en de streek en wordt daarna extern vertaald naar een inrichtingsplan met concrete maatregelen.&lt;/p&gt;&lt;p&gt;
In 2021 is een bureauonderzoek aardkunde, archeologie, cultuurhistorie en landschap uitgevoerd voor de inrichting Peizerdiep en Broekenloop. In dit onderzoek zijn de kansen en risico's voor archeologie al benoemd en is een uitgebreide advieskaart m.b.t. archeologisch vervolgonderzoek opgesteld. De exacte ingrepen waren echter nog niet bekend en het archeologische onderzoek is destijds niet conform de KNA uitgevoerd. Om de nu bekende ingrepen in het deelgebied Peizerdiep mee te nemen in het advies voor archeologisch vervolgonderzoek en om te voldoen aan de eisen van de KNA 4.2, is onderhavig bureauonderzoek uitgevoerd voor de herinrichting Peizerdiep. Daar waar relevant wordt verwezen naar het eerdere bureauonderzoek en/of wordt de informatie uit dit onderzoek samengevat.&lt;/p&gt;
DOI: 10.15468/dl.x225d3
title: Occurrence Download

description: A dataset containing 269304 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is Amanita muscaria",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 269304 records from 480 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014041-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xh33wk
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Bombus picipes",
 "Year 1982-2024"
 ]
}

 The dataset includes 23 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014056-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kxz8jg
title: Occurrence Download

description: A dataset containing 1101606 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Balaenopteridae"
 ]
}

 The dataset includes 1101606 records from 968 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014044-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nhgb3z
title: Occurrence Download

description: A dataset containing 113022 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bombus pascuorum (Scopoli, 1763)"
 ]
}

 The dataset includes 113022 records from 267 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015186-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vws25a
title: Occurrence Download

description: A dataset containing 1163 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CardObs : Observations naturalistes issues de l'outil CardObs-Données du partenariat Imerys - UMS PatriNat - 2018-2024"
 ]
}

 The dataset includes 1163 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006512-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.