cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5568229
title: SNP_variant_calls_using_V14167_as_genome_reference_for_alignments

description: Prior to calling SNPs between parents, the raw transcriptome sequence reads of each parent were aligned against reference sequences. Initial alignment of raw sequences from KSSc38901 and GKP10017 for identification of SNPs. Raw sequences of GKP10017 and KSSc38901 were aligned against the KSSc38901 transcriptome (Chopra et al. 2014) and A. duranensis V14617 genome sequences (Bertioli et al. 2016) using the bwa.0.7.5a (Li and Durbin, 2009) aligner with the backtrack approach. After alignment of the raw reads of KSSc38901 and GKP10017, the GATK version 2.6 variant calling tool (DePristo et al. 2011) was used to identify SNPs and InDels between these genotypes using the default parameters for UnifiedGenotyper and ploidy level of 2. Parameters of “Quality Depth (QD) &lt; 10.0 || Mapping Quality &lt; 40.0 || Allele Frequency &lt; 0.25 || Read Depth (DP) &lt; 40” were used to filter the SNP calls using vcftools version 1.1 (Danecek et al. 2011). Variant statistics were calculated using the vcf-stats script from vcftools version 1.1 (Danecek et al. 2011).
DOI: 10.6084/m9.figshare.5568220
title: SNP_variant_calls_using_KSSc38901_transcriptome_reference_for_alignment

description: Prior to calling SNPs between parents, the raw transcriptome sequence reads of each parent were aligned against reference sequences. Initial alignment of raw sequences from KSSc38901 and GKP10017 for identification of SNPs. Raw sequences of GKP10017 and KSSc38901 were aligned against the KSSc38901 transcriptome (Chopra et al. 2014) and A. duranensis V14617 genome sequences (Bertioli et al. 2016) using the bwa.0.7.5a (Li and Durbin, 2009) aligner with the backtrack approach. After alignment of the raw reads of KSSc38901 and GKP10017, the GATK version 2.6 variant calling tool (DePristo et al. 2011) was used to identify SNPs and InDels between these genotypes using the default parameters for UnifiedGenotyper and ploidy level of 2. Parameters of “Quality Depth (QD) &lt; 10.0 || Mapping Quality &lt; 40.0 || Allele Frequency &lt; 0.25 || Read Depth (DP) &lt; 40” were used to filter the SNP calls using vcftools version 1.1 (Danecek et al. 2011). Variant statistics were calculated using the vcf-stats script from vcftools version 1.1 (Danecek et al. 2011).
DOI: 10.6084/m9.figshare.5568220.v1
title: SNP_variant_calls_using_KSSc38901_transcriptome_reference_for_alignment

description: Prior to calling SNPs between parents, the raw transcriptome sequence reads of each parent were aligned against reference sequences. Initial alignment of raw sequences from KSSc38901 and GKP10017 for identification of SNPs. Raw sequences of GKP10017 and KSSc38901 were aligned against the KSSc38901 transcriptome (Chopra et al. 2014) and A. duranensis V14617 genome sequences (Bertioli et al. 2016) using the bwa.0.7.5a (Li and Durbin, 2009) aligner with the backtrack approach. After alignment of the raw reads of KSSc38901 and GKP10017, the GATK version 2.6 variant calling tool (DePristo et al. 2011) was used to identify SNPs and InDels between these genotypes using the default parameters for UnifiedGenotyper and ploidy level of 2. Parameters of “Quality Depth (QD) &lt; 10.0 || Mapping Quality &lt; 40.0 || Allele Frequency &lt; 0.25 || Read Depth (DP) &lt; 40” were used to filter the SNP calls using vcftools version 1.1 (Danecek et al. 2011). Variant statistics were calculated using the vcf-stats script from vcftools version 1.1 (Danecek et al. 2011).
DOI: 10.11588/data/gyldh5/4siq7o
title: Hydrogeochemical results of Mexico campaign 2020.xlsx

description: Table compiling the dataset of the hydrogeochemical results of Mexico campaign 2020.
DOI: 10.3886/e124923v1-84880
title: Data and code for: Comparing crime rates between undocumented immigrants, legal immigrants, and native-born U.S. citizens in Texas

description: We make use of uniquely comprehensive arrest data from the Texas Department of Public Safety to compare the criminality of undocumented immigrants to legal immigrants and native-born U.S. citizens between 2012 and 2018. We find that undocumented immigrants have substantially lower crime rates than native-born citizens and legal immigrants across a range of felony offenses. Relative to undocumented immigrants, U.S.-borns are over two times more likely arrested for violent crimes, two and half times more likely to be arrested for drug crimes, and over four times more likely to arrested for property crimes. In addition, the proportion of arrests involving undocumented immigrants in Texas was relatively stable or decreasing over this period. The differences between U.S.-born citizens and undocumented immigrants are robust to using alternative estimates of the broader undocumented population, alternate classifications of those counted as “undocumented” at arrest, and substituting misdemeanors or convictions as measures of crime.
DOI: 10.5281/zenodo.4719035
title: Dr.

description: This table is the elastic properties of clinohumite determined by ultrasonic interferometry method at high pressure and room temperature.
DOI: 10.5281/zenodo.4719034
title: Dr.

description: This table is the elastic properties of clinohumite determined by ultrasonic interferometry method at high pressure and room temperature.
DOI: 10.5281/zenodo.4719152
title: Multiscale phase separation by percolation model with the single chromatin loop resolution

description: GM12878.CTCF.clusters all_edges.csv:- This file contains the set of whole-genome chromatin interactions detected using the ChIA-PET method for CTCF protein that was used in our project. GM12878_subcompartments.csv:- Contains the bins classified into compartments as per Rao et.al. paper. hg19_PET2+_featuretable.tar.gz:- Contains tab-separated files for features sets calculated over loops for each chromosome. anchors_hg19_PET2+_featuretable.tar.gz:- Contains tab-separated files for features sets calculated over anchors for each chromosome.
description: Contact author :- Dariusz Plewczyński d.plewczynski@mini.pw.edu.pl
DOI: 10.5281/zenodo.4719151
title: Multiscale phase separation by percolation model with the single chromatin loop resolution

description: GM12878.CTCF.clusters all_edges.csv:- This file contains the set of whole-genome chromatin interactions detected using the ChIA-PET method for CTCF protein that was used in our project. GM12878_subcompartments.csv:- Contains the bins classified into compartments as per Rao et.al. paper. hg19_PET2+_featuretable.tar.gz:- Contains tab-separated files for features sets calculated over loops for each chromosome. anchors_hg19_PET2+_featuretable.tar.gz:- Contains tab-separated files for features sets calculated over anchors for each chromosome.
description: Contact author :- Dariusz Plewczyński d.plewczynski@mini.pw.edu.pl
DOI: 10.34740/kaggle/dsv/2160531
title: Contrastive Language Image Pretraining by openai
DOI: 10.5281/zenodo.4719155
title: Supplementary Files: Faecal microbiome transplantation as a solution to chronic enteropathies in dogs: a case study of beneficial microbial evolution

description: Supplementary Files linked to the manuscript "Faecal microbiome transplantation as a solution to chronic enteropathies in dogs: a case study of beneficial microbial evolution"
DOI: 10.5281/zenodo.4593800
title: Supplementary Files: Faecal microbiome transplantation as a solution to chronic enteropathies in dogs: a case study of beneficial microbial evolution

description: Supplementary Files linked to the manuscript "Faecal microbiome transplantation as a solution to chronic enteropathies in dogs: a case study of beneficial microbial evolution"
DOI: 10.34808/b84g-e471
title: Harmonic Analysis

description: We construct a decomposition of the identity operator on a Riemannian manifold M as   a sum of smooth orthogonal projections subordinate to an open cover of M. This extends a decomposition on the real line by smooth orthogonal projection due to Coifman and Meyer (C. R. Acad. Sci. Paris, Sér. I Math., 312(3), 259–261 1991) and Auscher, Weiss, Wickerhauser (1992), and a similar decomposition when M is the sphere by Bownik and Dziedziul (Const. Approx., 41, 23–48 2015).
We construct Parseval wavelet frames in L 2 (M ) for a general Riemannian manifold M and we show the existence of wavelet unconditional frames in L p (M ) for 1 &lt; p &lt; ∞.This is made possible thanks to smooth orthogonal projection decomposition of the identity operator on L 2 (M ), which was recently proven by the authors in [3]. We also show a characterization of Triebel-Lizorkin  and Besov spaces on compact manifolds interms of magnitudes of coefficients of Parseval wavelet frames. We achieve this by showing that Hestenes operators are bounded on manifolds M with bounded geometry.
DOI: 10.34808/0ymg-ve68
title: Thermographic imaging of electrochemical double layer capacitors during cycling charging - discharging 0 - 2,7 V at 80 mA. Sample 41.

description: Dataset contains thermal images of prototype electrochemical double layer capacitor taken during cyclic charging - discharging. The sample was charged to 2,7 V and discharged to 10 mV by constant current 80 mA. Sample 41.The images were taken with thermographic camera VigoCAM V50. The sample was covered by black graphite paint to ensure uniform surface emission. For sample charging and discharging the ATLAS 1361 MPG&T was used.The sample is in a form of triplex envelope (6 cm x 7 cm) with active structure (2,5 cm x 4 cm) inside and electrodes contacts at one of envelope edge.The ASCII text data file consists of images acquired within a fixed period of measurement, T = 60 sec. The recorded image is a matrix containing 388 x 288 temperature data. Each image is preceded with header with image number, date and time of acquisition.
DOI: 10.34808/k2xh-fx80
title: Thermographic imaging of electrochemical double layer capacitors during cycling charging - discharging 0 - 2,7 V at 160 mA. Sample 41.

description: Dataset contains thermal images of prototype electrochemical double layer capacitor taken during cyclic charging - discharging. The sample was charged to 2,7 V and discharged to 10 mV by constant current 160 mA. Sample 41.The images were taken with thermographic camera VigoCAM V50. The sample was covered by black graphite paint to ensure uniform surface emission. For sample charging and discharging the ATLAS 1361 MPG&T was used.The sample is in a form of triplex envelope (6 cm x 7 cm) with active structure (2,5 cm x 4 cm) inside and electrodes contacts at one of envelope edge.The ASCII text data file consists of images acquired within a fixed period of measurement, T = 60 sec. The recorded image is a matrix containing 388 x 288 temperature data. Each image is preceded with header with image number, date and time of acquisition.
DOI: 10.6084/m9.figshare.1232147
title: 38901_Trinity_25kmer.fasta.gz

description: Transcriptome sequence data in fasta format, gzipped. Sequence is of Arachis duranensis accession K38901.<br><br>
DOI: 10.5281/zenodo.4719161
title: Automated Support for Searching and Selecting Evidence in Software Engineering: A Cross-domain Systematic Mapping

description: List of included studies - Automated Support for Searching and Selecting Evidence in Software Engineering: A Cross-domain Systematic Mapping
DOI: 10.5281/zenodo.4719160
title: Automated Support for Searching and Selecting Evidence in Software Engineering: A Cross-domain Systematic Mapping

description: List of included studies - Automated Support for Searching and Selecting Evidence in Software Engineering: A Cross-domain Systematic Mapping
DOI: 10.6084/m9.figshare.1232146.v1
title: OLin_Trinity_Dedup.fasta.gz

description: Transcriptome sequence data in fasta format, gzipped. Sequence is of Arachis hypogaea (peanut) cultivar OLin.<br>
DOI: 10.6084/m9.figshare.1232146
title: OLin_Trinity_Dedup.fasta.gz

description: Transcriptome sequence data in fasta format, gzipped. Sequence is of Arachis hypogaea (peanut) cultivar OLin.<br>
DOI: 10.6084/m9.figshare.1232144
title: OLin_Trinity_25kmer.fasta.gz

description: Transcriptome sequence data in fasta format, gzipped. Sequence is of Arachis hypogaea (peanut) cultivar OLin.
DOI: 10.6084/m9.figshare.1232144.v1
title: OLin_Trinity_25kmer.fasta.gz

description: Transcriptome sequence data in fasta format, gzipped. Sequence is of Arachis hypogaea (peanut) cultivar OLin.
DOI: 10.6084/m9.figshare.1232143
title: OLin_SOAP_25kmer.fasta.gz

description: Transcriptome sequence data in fasta format, gzipped. Sequence is of Arachis hypogaea (peanut) cultivar OLin.
DOI: 10.6084/m9.figshare.1232143.v1
title: OLin_SOAP_25kmer.fasta.gz

description: Transcriptome sequence data in fasta format, gzipped. Sequence is of Arachis hypogaea (peanut) cultivar OLin.
DOI: 10.6084/m9.figshare.14483013
title: Supplementary Material for: Human Oral Mucosal Stem Cells Reduce Anastomotic Leak in an Animal Model of Colonic Surgery

description: <b><i>Background:</i></b> Anastomotic leak is regarded as one of the most feared complications of bowel surgery; avoiding leaks is a major priority. Attempts to reduce or eliminate leaks have included alternate anastomotic techniques. Human oral mucosa stem cells (hOMSC) are self-renewing and expandable cells derived from buccal mucosa. Studies have shown that hOMSC can accelerate tissue regeneration and wound healing. The objective of this study was to evaluate whether hOMSC can decrease anastomotic leak rates in a murine model of colon surgery. <b><i>Methods:</i></b> Two experiments were performed. In the first study, mice underwent colonic anastomosis using five interrupted sutures. hOMSC (<i>n</i> = 7) or normal saline (NS; <i>n</i> = 17) was injected into the colon wall at the site of the anastomosis. To evaluate whether hOMSC can impact anastomotic healing, the model was stressed by repeating the first experiment, reducing the number of sutures used for the construction of the anastomosis from five to four. Either hOMSC (<i>n</i> = 8) or NS (<i>n</i> = 20) was injected at the anastomosis. All mice that survived were sacrificed on postoperative day 7. Anastomotic leak rate, mortality, daily weight, and daily wellness scores were compared. <b><i>Results:</i></b> In the five-suture anastomosis, there were no differences in anastomotic leak rate, mortality, or daily weight. Mice that received hOMSC had significantly higher wellness scores on postoperative day 2 (<i>p</i> &lt; 0.05). In the four-suture anastomosis, there was a significant decrease in leak rate (70% [NS] vs. 25% [hOMSC], <i>p</i> = 0.029) and higher wellness scores in mice that received hOMSC (<i>p</i> &lt; 0.05). <b><i>Conclusion:</i></b> Our study suggests that injecting hOMSC at the colonic anastomosis can potentially reduce anastomotic leak and improve postoperative wellness in a murine model of colon surgery.
DOI: 10.15151/esrf-es-404439945
title: Mobilization of rhenium in magmatic fluids with implications for its exploration

description: Rhenium (Re) is one of the rarest elements on Earth (average abundance &lt; 1 ppb) and is of fundamental importance for our modern high-tech industry due to its high thermal stability (melting temperature beyond 3100 °C). Yet the enrichment process of Re in ore deposits is little understood mainly due to the difficulties to perform experiments at extremely high dilution levels and simultaneously at high P/T conditions. The new ESRF-extremely brilliant source capabilities and several recent technical developments at the ESRF beamlines FAME and BM23 allow overcoming these limitations. We therefore propose to study systematically the solubility and speciation of Re in fluids as a function of P/T and fluid composition using X-ray fluorescence spectroscopy and High-Energy Resolution Fluorescence Detection (HERFD) X-ray spectroscopy. The new data will improve our understanding of Re mobilization in magmatic systems and its enrichment process with implications for the exploration of Re.
DOI: 10.5281/zenodo.4718497
title: Training frames for NEOPOLL bumblebee object detector

description: Images of bumblebees in flying arena. Annotations will be provided when they have been made.
DOI: 10.5281/zenodo.4718496
title: Training frames for NEOPOLL bumblebee object detector

description: Images of bumblebees in flying arena. Annotations will be provided when they have been made.
DOI: 10.6084/m9.figshare.1232147.v1
title: 38901_Trinity_25kmer.fasta.gz

description: Transcriptome sequence data in fasta format, gzipped. Sequence is of Arachis duranensis accession K38901.<br><br>
DOI: 10.5282/ubm/data.206
title: Forschungsdatensatz für eine kriteriengestützte Metaanalyse zu Partizipationsansätzen in der Nachhaltigkeitsforschung

description: Die Daten bieten einen Einblick in die wissenschaftliche Literatur zu konzeptionellen und empirischen Ansätzen der partizipativen Nachhaltigkeitsforschung von 2000 bis 2018. Die Grundlage der Daten bildet eine Literaturrecherche auf den Plattformen Scopus, Web of Science sowie aus Google Scholar. Im Datensatz sind Informationen zur Bibliographie und zur Analyse der Artikel enthalten. Auf der Grundlage von 207 relevanten Artikeln werden 31 Fallstudien ausgewählt und Kriterien angewendet, um vier Beteiligungsansätze zu unterscheiden, die in den ausgewählten Studien geplant und praktiziert werden. Der Datensatz stellt die Analyse nachvollziehbar dar.
description: Die Dissertation ist unter dem Titel "Transformation oder Stagnation? Partizipation in der Nachhaltigkeitsforschung – eine vergleichende Fallstudie" mit der ISBN 978-3-95925-176-1 für die Print-Version in der Reihe „Open Publishing in the Humanities“ der Universitätsbibliothek der LMU München erschienen (Online abrufbar unter DOI: https://doi.org/10.5282/oph.10)
DOI: 10.5281/zenodo.4719251
title: Terrorism Data - Global & United States

description: Data was gathered from the Global Terrorism Database and the Washington Posts's GitHub on global and domestic terrorist activity, respectively. The data was preprocessed for the intent of summarizing and analyzing terrorism around the world and in the United States.
DOI: 10.5281/zenodo.4719250
title: Terrorism Data - Global & United States

description: Data was gathered from the Global Terrorism Database and the Washington Posts's GitHub on global and domestic terrorist activity, respectively. The data was preprocessed for the intent of summarizing and analyzing terrorism around the world and in the United States.
DOI: 10.5281/zenodo.4719240
title: European Building Vulnerability Data Repository

description: A repository for the European vulnerability database developed as part of ESRM20. More information available in the following report: SERA Deliverable D26.5 (European physical vulnerability models), available from URL: http://eu-risk.eucentre.it/wp-content/uploads/2019/08/SERA_D26.5_Physical_Vulnerability.pdf
DOI: 10.34808/jr7r-bq86
title: Thermographic imaging of electrochemical double layer capacitors during cycling charging - discharging 0 - 3,0 V at 250 mA. Sample 24.

description: Dataset contains thermal images of prototype electrochemical double layer capacitor taken during cyclic charging - discharging. The sample was charged to 3,0 V and discharged to 10 mV by constant current 250 mA. Last experiment with sample 24The images were taken with thermographic camera VigoCAM V50. The sample was covered by black graphite paint to ensure uniform surface emission. For sample charging and discharging the ATLAS 1361 MPG&T was used.The sample is in a form of triplex envelope (6 cm x 7 cm) with active structure (2,5 cm x 4 cm) inside and electrodes contacts at one of envelope edge.The ASCII text data file consists of images acquired within a fixed period of measurement, T = 60 sec. The recorded image is a matrix containing 388 x 288 temperature data. Each image is preceded with header with image number, date and time of acquisition.
DOI: 10.5519/qd.2x2ziy52
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1695 records)
DOI: 10.5281/zenodo.4719257
title: List of compounds identified by SBVS and LBVS

description: Table S1: List of 45 compounds identified by SBVS; Table S2: List of 42 compounds identified by LBVS.
DOI: 10.5281/zenodo.4719256
title: List of compounds identified by SBVS and LBVS

description: Table S1: List of 45 compounds identified by SBVS; Table S2: List of 42 compounds identified by LBVS.
DOI: 10.6084/m9.figshare.1232142
title: OLin_AByss_Mmer_NCBI.fasta.gz

description: Transcriptome sequence data in fasta format, gzipped.<br>Sequence is of Arachis hypogaea (peanut) cultivar OLin.
DOI: 10.6084/m9.figshare.1232142.v1
title: OLin_AByss_Mmer_NCBI.fasta.gz

description: Transcriptome sequence data in fasta format, gzipped.<br>Sequence is of Arachis hypogaea (peanut) cultivar OLin.
DOI: 10.6084/m9.figshare.14246294
title: Supplemental material.docx

description: Dynamic changes in rumen fermentation parameters in cows of the donor-recipient (DR) and self-recipient (SR) groups following rumen content transplantation.<br>Spearman correlation coefficients between the top 10 transplantation sensitive operational taxonomic units (OTU) and rumen fermentation following rumen content transplantation.<br><br>Diurnal variation of rumen pH between the conventional (CON) and high-grain (HG) diet groups.<br>
DOI: 10.6084/m9.figshare.14482791
title: Leaf Spot Data

description: Data refer to the following published manuscript:<br>Denwar, N. N., C. E. Simpson, J. L. Starr, T. A. Wheeler, and M. D. Burow. (2021) Evaluation and Selection of Interspecific Lines of Groundnut (Arachis hypogaea L.) for Resistance to Leaf Spot Disease and for Yield Improvement. Plants 2021, 10, x. https://doi.org/10.3390/xxxxx.<br><br><br>Combined Ghana Data contains early and late leaf spot scores, calculated AUDPC, and pod yield data for two years and two locations. The file is a space-delimited ASCII text file (CPM/DOS/OS2/Windows EOL characters [0x0D 0x0A]).<br><br>Five files contain data used to calculate time to 50% of plants having either early or late leaf spots, as well as the calculated value of days to 50% infection. Each year/location/disease is a separate file. Again, files are space-delimited ASCII text files.<br>CalcIP6 is the program used to calculate time to 50% infection. The C source code and the DOS/Windows executable file are provided (requires NTVDM 16-bit support to run under MS-Windows, or will run under DOSBOX under 64-bit Windows).<br><br><br><br>
DOI: 10.6084/m9.figshare.14246294.v5
title: Supplemental material.docx

description: Dynamic changes in rumen fermentation parameters in cows of the donor-recipient (DR) and self-recipient (SR) groups following rumen content transplantation.<br>Spearman correlation coefficients between the top 10 transplantation sensitive operational taxonomic units (OTU) and rumen fermentation following rumen content transplantation.<br><br>Diurnal variation of rumen pH between the conventional (CON) and high-grain (HG) diet groups.<br>
DOI: 10.6084/m9.figshare.14246294.v4
title: Supplemental material.docx

description: Dynamic changes in rumen fermentation parameters in cows of the donor-recipient (DR) and self-recipient (SR) groups following rumen content transplantation.<br>Spearman correlation coefficients between the top 10 transplantation sensitive operational taxonomic units (OTU) and rumen fermentation following rumen content transplantation.<br><br>Diurnal variation of rumen pH between the conventional (CON) and high-grain (HG) diet groups.<br>
DOI: 10.6084/m9.figshare.1232139
title: OLin_AByss_Mmer_Dedup.fasta.gz

description: Transcriptome sequence data in fasta format, gzipped.<br>Sequence is of Arachis hypogaea (peanut) cultivar OLin.<br>
DOI: 10.6084/m9.figshare.1232139.v1
title: OLin_AByss_Mmer_Dedup.fasta.gz

description: Transcriptome sequence data in fasta format, gzipped.<br>Sequence is of Arachis hypogaea (peanut) cultivar OLin.<br>
DOI: 10.6084/m9.figshare.1232138
title: OLin_AByss_Mmer.fasta.gz

description: Transcriptome sequence data in fasta format, gzipped.<br>Sequence is of Arachis hypogaea (peanut) cultivar OLin.