cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16817617.v1
title: Supplementary Material for: Is Cardiomegaly an Indication of “Heart-Sparing Effect” in Small Fetuses?

description: <b><i>Introduction:</i></b> This study aimed to test the hypothesis that cardiac size is maintained in small fetuses presenting with cardiomegaly. <b><i>Materials and Methods:</i></b> We identified singleton fetuses with estimated fetal weight &lt;10th centile and with cardiomegaly without another more likely cardiac or extra-cardiac cause. We used <i>Z</i>-scores for cardiac and thoracic circumferences normalized for gestational age (GA), biparietal diameter (BPD), head circumference (HC), and femur length (FL), obtained from 188 normally grown fetuses. <b><i>Results:</i></b> When comparing chest size, small fetuses had significantly lower thoracic circumferences median <i>Z</i>-scores (IQR) for GA = −4.82 (−6.15 to −3.51), BPD = −2.42 (−4.04 to −1.48), HC = −2.72 (−4.53 to −1.90), and FL = −1.60 (−2.87 to −0.71); <i>p</i> &lt; 0.001 for all. When comparing heart size, small fetuses showed lower cardiac circumferences median <i>Z</i>-scores (IQR) for GA = −1.59 (−2.79 to −0.16); <i>p</i> &lt; 0.001, similar cardiac circumferences <i>Z</i>-scores for BPD = 0.29 (−0.65 to 1.28); <i>p</i> = 0.284 and HC = 0.11 (−1.13 to 0.96); <i>p</i> = 0.953, and higher cardiac circumferences <i>Z</i>-scores for FL = 0.94 (−0.05 to 2.13); <i>p</i> &lt; 0.001. <b><i>Conclusions:</i></b> Our results show that in small fetuses with cardiomegaly, the heart maintains normal dimensions when normalized to cranial diameters and higher dimensions when normalized to long bones. This provides insight into cardiac adaptation to adverse intrauterine environment.
DOI: 10.6084/m9.figshare.27126393.v1
title: Transcription of interviews.docx

description: The data corresponds to the transcripts of 32 qualitative interviews carried out in the context of a study that aimed to analyze the social representations of COVID-19 among adults and elderly people who had been hospitalized by the disease. It was a qualitative, descriptive and exploratory study, using the Theory of Social Representations, in which people hospitalized for COVID-19 in a public hospital in northeastern Brazil were interviewed between June and August 2021. The interviews were analyzed using IRAMUTEQ software, so they are in a format suitable for this purpose.
DOI: 10.6084/m9.figshare.24493273.v1
title: Yang et al_hy_Data

description: There are three folders, namely, data, results, and code. For details, please refer to the "read_me.doc"
DOI: 10.6084/m9.figshare.22299121.v1
title: CORETM wearable sensor: comparison against gastrointestinal temperature during cold water ingestion and a 5 km running time-trial

description: Five km running time-trials (TT) are associated with rapid and significant increases in core body temperature (TC). For such races, real-time feedback from pre-exercise and exercise TC may be helpful in the design of an optimal pacing strategy aimed at limiting the possibility of developing heat-related illnesses. This study compared measurements of TC obtained with a wearable device, the CORETM, to those of a gastrointestinal pill (GI pill), during cold water ingestion and a 5 km running TT. Twelve participants (25 ± 4 yrs) ingested 7.5 mL/kg fat-free mass of 4°C water over the first 5 min of a 120 min sitting period, after which they completed a 5 km running TT at 30°C, 50% relative humidity. A TC difference &gt; ± 0.25°C between sensors was deemed clinically unacceptable. Prior to water ingestion, the CORE-derived TC was 0.49 ± 0.25°C lower than the GI pill. The CORE was irresponsive to the 0.26 ± 0.22°C peak decline in TC captured with the GI pill 40 min following water ingestion. Prior to the TT, TC was 0.30 ± 0.25°C lower with the CORE than the GI pill. During the TT, the CORE underestimated the rate of increase in TC by 0.0125 ± 0.019°C/min compared with the GI pill, and mean absolute difference in TC between sensors was of 0.47 ± 0.34°C. In conclusion, the CORE does not capture the cooling effect of cold water ingestion and provides a clinically relevant underestimation of TC during a 5 km running TT in the heat.
DOI: 10.6084/m9.figshare.22233706.v1
title: cryoEM_maps_models.tar.gz

description: CryoEM maps and models of the designs presented in "Precisely patterned nanofibers made from extendable protein multiplexes"
DOI: 10.6084/m9.figshare.27623595.v1
title: Methane C13 isotope

description: C13 proportion (delta) in emitted methane
DOI: 10.6084/m9.figshare.5263120.v1
title: Diversity and evolution of the flowering plants of the Caatinga Domain - Supplementary Data

description: These are supplementary files to the chapter "Diversity and evolution of the flowering plants of the Caatinga Domain" published in "Silva JMCS, Leal IR, Tabarelli M (eds) <b>Caatinga: The largest Tropical Dry Forest Region in South America</b>" by Springer. The data presented here describe in detail the methods and results of the meta-analysis we made on phylogenetic and diversification of evolution of plants in the semiarid Caatinga. The images here bring in full resolution the trees presented in the publication. To analyze biogeographical patterns of plant evolution in Caatinga we compiled published (and a few inedited) phylogenies of plant lineages from the Brazilian semiarid. Due to space limitation in the book chapter, the detailed methods and individual phylogenetic trees for each clade are presented here.
DOI: 10.6084/m9.figshare.25092602.v1
title: Supplementary Material for: CCL7 chemokine is a marker but not a therapeutic target of acute kidney injury

description: Background: Chemokines orchestrate immune cells activation and infiltration during acute kidney injury (AKI). 
Objectives: We aim to test whether deletion of C-C Chemokine Ligand 7 (CCL7), a small chemokine related to CCL2 (MCP-1), may modulate AKI development and progression toward kidney fibrosis. 
Method: Expression of CCL7 was quantified in murine cortical tubular (MCT) cells exposed to myoglobin or lipopolysaccharide or submitted to metabolic reprogramming. Kidney function (BUN, glomerular filtration rate), expression of CCL7 receptors, and kidney infiltration by inflammatory cells (F4/80+ macrophages, MPO+ neutrophils, and B220+ B-cells) were assessed in wt and Ccl7-/- mice submitted to 3 different models of AKI or kidney fibrosis (uni/bilateral ischemia/reperfusion injury (u/bIRI) and rhabdomyolysis).
Results: Toxin exposure of MCT cells, as well as metabolic reprogramming recapitulating AKI changes, led to a dramatic up-regulation of CCL7. In vivo, kidney expression of Ccl7 and Ccl2 significantly increased after AKI and remained increased beyond the acute phase (30 days after uIRI). The expression of the CCL7 receptors was heterogeneous and varied with time. Kidney function, expression of CCL7 receptors and Ccl2, and the number of inflammatory cells within kidneys were similar in wt and Ccl7-/- mice at baseline and at day 2 after AKI. 30 days after uIRI, kidney fibrosis was similar in both mouse strains.
Conclusions: Despite strong induction of CCL7 after AKI, CCL7 deficiency does not prevent AKI and the transition toward kidney fibrosis and should probably not be further explored as a potential target to prevent or treat AKI.
DOI: 10.6084/m9.figshare.26688437.v1
title: Additional file 5 of A genotyping array for the globally invasive vector mosquito, Aedes albopictus

description: Additional file 5. Comparing the genotypes of replicate samples.
DOI: 10.6084/m9.figshare.28191605.v1
title: Effects of potassium addition on plant biomass and soil organic carbon

description: These datasets include the raw data for a global meta-analysis of potassium addition effects on plant productivity and soil organic carbon content.
DOI: 10.6084/m9.figshare.21505017.v2
title: How to effectively evaluate the mainstream Gross Primary Production Products in regions with few observation data?

description: The dynamic of Gross Primary Production (GPP) is key to understand the global carbon cycle. Multiple GPP products are currently available based on remote sensing, Light Use Efficiency model (LUE) or diagnostic biophysical model. However, little knowledge is available in understanding spatial patterns of the uncertainty of different GPP products and potential drivers over the Central Asia (CA), a fragile environment for accurate GPP estimation. This study investigates the sensitivity of the 8-day, monthly and yearly GPP uncertainties based on the three-cornered hat (TCH) method and Shapley additive explanation (SHAP) model in terms of vegetation, energy, water, climate and terrain factors in the dryland ecosystem over the 2003-2015 period. Ten GPP products are involved in this work, including one product (FLUXCOM) from machine learning (ML), six products (EC-LUE, FluxSat, LUEopt, MODIS, MuSyQ and VPM) based on the Light Use Efficiency model (LUE), two products (GOSIF and NIRv) from satellite-based direct proxies (Proxies) and one product (PML) from the diagnostic biophysical model. The results indicate that the spatial distribution of the ten GPP products in CA showed similar patterns at different time scales, while their values varied depending on various products and for different time scales. According to the EC observations and the TCH-based uncertainties, the FLUXCOM product showed smaller relative uncertainties than other products. The attribution analysis denotes that the sources of uncertainty of the GPP varied for each product. The installation of EC stations in CA is an effective way to improve the accuracy of all methods. In addition, the FLUXCOM should adapt the vegetation- related module to the dryland environment of CA. The LUE model should optimize the LUE parameters for the dryland ecosystem and incorporate the water related variables in the model. The Proxies’ model should incorporate the water and energy variables (such as soil moisture and radiation) as input data to improve their performance in CA. The diagnostic model should consider the elevation variable as input data, which may improve the performance of the PML in CA. Our results do not only provide an important basis for the selection of GPP products in the study of the carbon cycle in CA, but also offer a new insight into the GPP model development and improvement for the dryland ecosystem.
DOI: 10.6084/m9.figshare.21791633.v1
title: Grades 3-5 dataset for Elementary Article Data Repository.sav

description: This dataset goes to the elementary reading intervention efficacy study "Using Readable English Leads to Reading Gains for Rural Elementary Students: An Experimental Study."
DOI: 10.6084/m9.figshare.20480355.v2
title: Innovation and elaboration on the avian tree of life

description: Processed data for reproducing figures and analyses in: "Innovation and elaboration on the avian tree of life".The corresponding code is available one GitHub: https://github.com/TGuillerme/elaboration_exploration_bird_beaks
DOI: 10.6084/m9.figshare.19499315.v1
title: patches and local annotations, slide 181, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.1254250.v1
title: A comparison between conductive and infrared devices for measuring mean skin temperature at rest, during exercise in the heat, and recovery

description: <strong>Purpose:</strong> Skin temperature assessment has historically been undertaken with conductive devices affixed to the skin. With the development of technology, infrared devices are increasingly utilised in the measurement of skin temperature. Therefore, our purpose was to evaluate the agreement between four skin temperature devices at rest, during exercise in the heat, and recovery. <strong>Methods:</strong> Mean skin temperature ( ) was assessed in thirty healthy males during 30 min rest (24.0 ± 1.2 °C, 56 ± 8%), 30 min cycle in the heat (38.0 ± 0.5 °C, 41 ± 2%), and 45 min recovery (24.0 ± 1.3 °C, 56 ± 9%). was assessed at four sites using two conductive devices (thermistors, iButtons®) and two infrared devices (infrared thermometer, infrared camera). <strong>Results:</strong> Bland–Altman plots demonstrated mean bias ± limits of agreement between the thermistors and iButtons® as follows (rest, exercise, recovery): -0.01 ± 0.04, 0.26 ± 0.85, -0.37 ± 0.98 °C; thermistors and infrared thermometer: 0.34 ± 0.44, -0.44 ± 1.23, -1.04 ± 1.75 °C; thermistors and infrared camera (rest, recovery): 0.83 ± 0.77, 1.88 ± 1.87 °C. Pairwise comparisons of found significant differences (p &lt; 0.05) between thermistors and both infrared devices during resting conditions, and significant differences between the thermistors and all other devices tested during exercise in the heat and recovery. <strong>Conclusions:</strong> These results indicate poor agreement between conductive and infrared devices at rest, during exercise in the heat, and subsequent recovery. Infrared devices may not be suitable for monitoring in the presence of, or following, metabolic and environmental induced heat stress.
DOI: 10.6084/m9.figshare.6857486.v1
title: Analyses of Shallow Convection over the Amazon Coastal Region Using Satellite Images, Data Observations and Modeling

description: Abstract The Belem region of the state of Para, which is located in northern of Brazil and part of the Amazon biome is characterized by high temperatures, strong convection, unstable air conditions and high humidity favoring the formation of convective clouds. Shallow convection and deep convection are among the main components of the local energy balance. Typically a deep convection over the continents is preceded by a shallow convection. An analysis of the performance of the Jet Propulsion Laboratory / National Aeronautics and Space Administration (JPL/NASA) model of shallow convection parameterization in a framework of the single column model (SCM), in relation to the cluster of cumulus clouds formed in the coastal region of the Amazon forest due to squall lines, is provided. To achieve this purpose enhanced satellite images and infrared images from channels 2 and 4 from the GOES-12 satellite, and data obtained by the “Cloud processes of tHe main precipitation systems in Brazil: A contribUtion to cloud resolVing modeling and to the GPM (GlobAl Precipitation Measurement)” - CHUVA - campaign, during the month of June of 2011, were used. During that period, clusters of cumulus clouds penetrated the interior of the Amazon, causing heavy rains. Results demonstrated that the parameterizations performed well in the case where only a core of clouds was observed, such as at 18:00h on 14 June. This period of the day also presents the smallest bias and root mean square error (rmse) values for the relative humidity. For the potential temperature the smallest value of bias is at 12:00h on June 7th (0.18 K), the largest one is on June 11th (-2.32 K) and the rmse ranges from 0.59 to 2.99 K.
DOI: 10.6084/m9.figshare.7013003.v4
title: Test Tractogram for DIPY

description: Testing tractogram of one of the HCP dataset subjects to be used in DIPY's tutorials.<br><br><br>
DOI: 10.6084/m9.figshare.28417991.v1
title: PACE1984 Custody and Coercion - waiving legal representation in police custody - Supplemental Material

description: Four decades after the introduction of The Police and Criminal Evidence Act 1984 (PACE 1984), the guidance concerning detention, custodial rights, investigations and suspect interviews remains non-binding despite the exercise of these powers impacting human rights.This research found identifying vulnerability and implementing safeguarding measures varies significantly across the 43 police forces and uncovers startling concerns regarding complaints. When legal advice is refused and no appropriate adult is present to ensure powers are being exercised correctly, this becomes problematic and brings consequences. This article evaluates the legal realities of first-time detainees, 18-25-year-olds, and those in society with intellectual, educational, or cognitive shortcomings who fall outside the current vulnerability safeguarding measures and waive their right to legal representation. It considers PACE 1984 sections 58, 66, 67 and PACE Code paragraph 6, how consent is impacted for these individuals when waiving legal advice rights, and contends reform is needed.
DOI: 10.6084/m9.figshare.14672188.v1
title: A new Pleistocene <i>Ctenomys</i> and divergence dating of the hyperdiverse South American rodent family Ctenomyidae

description: The South American <i>Ctenomys</i> is the most speciose genus among both hystricomorphs and subterranean rodents of the world. Here, we present the most exhaustive phylogenies and timetree of living and extinct <i>Ctenomys</i> attempted thus far. We describe <i>Ctenomys rusconii</i> sp. nov., a small-sized species from the upper Early Pleistocene of central Argentina. We analyse its cranial and mandibular shape as well as its phylogenetic position in the context of other extinct <i>Ctenomys</i> and a wide sample of living species. A parsimony analysis shows that <i>Ctenomys rusconii</i> sp. nov. integrates the stem group of <i>Ctenomys</i> together with late Pliocene to Middle Pleistocene species, while the crown group comprises only Middle Pleistocene to recent representatives. Within the crown <i>Ctenomys</i>, nine well-supported major clades were recovered, eight of which are consistent with previously recognized extant species groups. A Bayesian tip-dating analysis provided divergence age estimates of 3.8 Ma and 1.3 Ma for the origin of the genus and the crown clade, respectively. Remarkably, the extinct species recovered as members of the crown clade, i.e. <i>C. dasseni</i>, <i>C. kraglievichi</i>, <i>C. subassentiens</i> and <i>C. viarapaensis</i>, were clustered into the earliest diverging clade corresponding to the <i>frater</i> species group. Age estimates for the divergence of the crown and its major clades are markedly younger than what has been generally considered so far, which implies a new view on the timing of taxonomic, ecological and geographical diversification of the genus. Even considering that this interpretation is affected by biases inherent to the fossil record, the phylogenetic delimitation of the crown clade as restricted to species recorded since the Middle Pleistocene seems to configure a pattern underlain by a fast and late cladogenesis. http://zoobank.org/urn:lsid:zoobank.org:pub:14D8C3B2-CD37-4F30-84A2-14FDC20F1193
DOI: 10.6084/m9.figshare.9874310.v1
title: plosone.sas7bdat

description: Survey experiment data on the role of exposure to advertisements on individuals behavior
DOI: 10.6084/m9.figshare.13340531.v1
title: Supplementary Material for: Associations between Polymorphisms in the <b><i>IL-1</i></b> Gene and the Risk of Rheumatoid Arthritis and Systemic Lupus Erythematosus: Evidence from a Meta-Analysis

description: <b><i>Background:</i></b> Previous studies on polymorphisms in interleukin-1 (<i>IL-1</i>) and the risk of rheumatoid arthritis (RA)/systemic lupus erythematosus (SLE) yielded inconsistent results. <b><i>Objectives:</i></b> The authors performed this meta-analysis to more robustly evaluate associations between polymorphisms in the <i>IL-1</i> gene and the risk of RA/SLE. <b><i>Methods:</i></b> MEDLINE, Embase, Web of Science, Wanfang, VIP, and CNKI were systematically searched for eligible studies, and 34 relevant studies were finally selected to be eligible for inclusion. <b><i>Results:</i></b> We found that <i>IL-1A</i> +4845G/T polymorphism was significantly associated with the risk of RA in the overall population (dominant comparison: <i>p</i> = 0.02; overdominant comparison: <i>p</i> = 0.05; allele comparison: <i>p</i> = 0.04), whereas <i>IL-1B</i> +3954C/T polymorphism was significantly associated with the risk of RA in the overall population (overdominant comparison: <i>p</i> = 0.03; allele comparison: <i>p</i> = 0.01) and Asians (recessive comparison: <i>p</i> = 0.007; allele comparison: <i>p</i> = 0.002). In addition, we found that <i>IL-1A</i> –889C/T polymorphism was significantly associated with the risk of SLE in Caucasians (allele comparison: <i>p</i> = 0.04), <i>IL-1B</i> –31T/C polymorphism was significantly associated with the risk of SLE in the overall population (recessive comparison: <i>p</i> = 0.04), and <i>IL-1B</i> –511C/T polymorphism was significantly associated with the risk of SLE in Asians (recessive comparison: <i>p</i> = 0.01; allele comparison: <i>p</i> = 0.03). <b><i>Conclusions:</i></b> This meta-analysis suggests that <i>IL-1A</i> +4845G/T and <i>IL-1B</i> +3954C/T polymorphisms may influence the risk of RA, whereas <i>IL-1A</i> –889C/T, <i>IL-1B</i> –31T/C, and <i>IL-1B</i> –511C/T polymorphisms may influence the risk of SLE.
DOI: 10.6084/m9.figshare.17708438.v1
title: Data Sharing

description: The data provided in this repository is the dataset of the article “Disaggregated Approach of Local Government Expenditures and Poverty Reduction: Empirical Evidence from Panel Data Analysis”. The raw data are gathered from The Ministry of Finance in Indonesia and the Central Bureau of Statistic Indonesia. In addition, this article uses a panel data set of 24 districts/cities in South Sulawesi for the period of 2015 to 2020.
DOI: 10.6084/m9.figshare.19249622.v1
title: Microscopy images

description: Microscopy images for "Polycomb-mediated repression of paternal chromosomes maintains haploid dosage in diploid embryos of Marchantia".
DOI: 10.6084/m9.figshare.26401564.v1
title: Tsukamura et al., KNTC1 establishes structural segmentation in mitochondria

description: Mitochondria contribute to cellular metabolism by providing a specialised milieu for energising cells by incorporating and processing the metabolites. However, a heterogeneity in the mitochondrial structure within is only partially elucidated. Mitochondria dynamically alter their morphology and functions during the life of animals, in which cells execute proliferation and growth. We here show that Kntc1, a highly conserved molecule, exhibits translocation from the Golgi apparatus to mitochondria upon glutamine deprivation and plays an essential role in maintaining mitochondrial linear segments (LMS) in interphase. The Kntc1 localisation in the LMS shows a concomitant increase in the membrane potential, suggesting Kntc1’s role in reserving the energy-generating potential in case starvation persists. Suppression of Kntc1 provokes overuse of glutamine and lactate production, thus impacting cellular metabolism, which leads to anchorage-independent overgrowth of cells. Indeed, the <i>KNTC1 </i>variant was identified in a patient with ovarian cancer, suggesting that regulating mitochondrial metabolism by Kntc1 is essential for maintaining proper cellular status. Our results indicate that functional segmentation of mitochondrial underlies the physiological maintenance of metabolism.
DOI: 10.6084/m9.figshare.28670054.v1
title: <i>Two Alviniconcha </i>snails (<i>Alviniconcha marisindica</i> and <i>Alviniconcha</i> <i>adamantis</i>) genome and annotation files

description: We assembled two high-quality chromosomal-level genomes and their annotation files.