cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7044478
title: Karyotypic stasis and swarming influenced the evolution of viral tolerance in a speciose bat radiation.

description: This repository is reserved as the data archive for Karyotypic stasis and swarming influenced the evolution of viral tolerance in a speciose bat radiation.
This repository contains whole genome alignments for 60 species mapped to the mMyoMyo1.p genome assembly, alignments used for concatenation and coalescence phylogenomic analyses, recombination maps for Myotis myotis and Myotis brandtii generated as part of this study and the updated Myotis myotis genome assembly.
DOI: 10.5281/zenodo.7044479
title: Karyotypic stasis and swarming influenced the evolution of viral tolerance in a speciose bat radiation.

description: This repository is reserved as the data archive for Karyotypic stasis and swarming influenced the evolution of viral tolerance in a speciose bat radiation.
This repository contains whole genome alignments for 60 species mapped to the mMyoMyo1.p genome assembly, alignments used for concatenation and coalescence phylogenomic analyses, recombination maps for Myotis myotis and Myotis brandtii generated as part of this study and the updated Myotis myotis genome assembly.
DOI: 10.6073/pasta/69109c56fcf21a30a8d37369cb47f8de
title: CSM08 Small mammal host-parasite sampling data for 16 linear trapping transects located in 8 LTER burn treatment watersheds at Konza Prairie

description: Data set contains summaries (summer) of the number of individuals of each species of small mammal captured (relative abundance) on each transect. Each record contains date, treatment, transect, trap station, species, specimen number, recapture status, specimen disposition, external body measurements (where applicable), reproductive information, and miscellaneous associated comments. These sampling records are based on nightly captures during one 4-night trapping period in summer (June through August) for each of 16 permanent transects established on eight fire treatments (two transects per treatment). These treatments include two seasonal burn watersheds (SpB, SuB), two reversal burn watersheds (R1A, R20A), one annual burn watershed (1D), two 4-year burn watersheds (4B, 4F, and one 20-year burn watershed (20B). None of these treatments implement bison grazing.
DOI: 10.5281/zenodo.10529112
title: Insights into intraspecific diversity of central carbon metabolites in Saccharomyces cerevisiae during wine fermentation

description: Supplementary data including the data set used for the " Insights into intraspecific diversity of central carbon metabolites in Saccharomyces cerevisiae during wine fermentation" publication.


Abstract:


Saccharomyces cerevisiae, as the workhorse of alcoholic fermentation, is a major actor in winemaking. In this context, this yeast species performs alcoholic fermentation to convert sugars from the grape must into ethanol and CO2 with outstanding efficiency as it reaches on average 92% of the maximum theoretical yield of conversion. Primary metabolites produced during fermentation have a great importance in wine where they significantly impact wine characteristics. While ethanol content contributes to the overall profile, others metabolites also have significant impacts, even when present in lower concentrations: glycerol, succinate, acetate, ⍺-ketoglutarate, lactate… S. cerevisiae is known for its great genetic diversity and plasticity that is directly related to its living environment, natural or technological and therefore to domestication. This leads to a wide phenotypic diversity of metabolites production. However, the range of metabolic diversity is variable and depends on the pathway considered. With the aim to improve wine quality, the selection, development and use of strains with dedicated metabolites production without genetic modifications can rely on the already existing natural diversity. Here we detail a screening experiment that aims to assess the diversity of primary metabolites production in a set of 51 S. cerevisiae strains from various genetic backgrounds (wine, flor, rum, West African, sake…). To approximate winemaking conditions, we used a synthetic grape must as fermentation medium and measured seven metabolites by HPLC. Results pointed out great yield differences between strains depending on the metabolite considered. Ethanol appeared as the one with the smallest variation among our set of strains, although it was by far the most produced. A clear negative correlation between ethanol and glycerol was observed, confirming glycerol synthesis as a suitable  lever to reduce ethanol yield. Genetic groups were linked to specific metabolic yields such as high α-ketoglutarate and low acetate yields for wine strains. This study thus helps to characterise the phenotypic diversity of S. cerevisiae in a wine-like context and comforts the use of natural diversity in the development of new strains. Finally, it provides a detailed data set usable to study diversity of well known (ethanol, glycerol, acetate) or little-known (lactate) primary metabolites production, including in common commercial wine strains.
DOI: 10.5281/zenodo.8425970
title: Insights into intraspecific diversity of central carbon metabolites in Saccharomyces cerevisiae during wine fermentation

description: Supplementary data including the data set used for the " Insights into intraspecific diversity of central carbon metabolites in Saccharomyces cerevisiae during wine fermentation" publication.


Abstract:


Saccharomyces cerevisiae, as the workhorse of alcoholic fermentation, is a major actor in winemaking. In this context, this yeast species performs alcoholic fermentation to convert sugars from the grape must into ethanol and CO2 with outstanding efficiency as it reaches on average 92% of the maximum theoretical yield of conversion. Primary metabolites produced during fermentation have a great importance in wine where they significantly impact wine characteristics. While ethanol content contributes to the overall profile, others metabolites also have significant impacts, even when present in lower concentrations: glycerol, succinate, acetate, ⍺-ketoglutarate, lactate… S. cerevisiae is known for its great genetic diversity and plasticity that is directly related to its living environment, natural or technological and therefore to domestication. This leads to a wide phenotypic diversity of metabolites production. However, the range of metabolic diversity is variable and depends on the pathway considered. With the aim to improve wine quality, the selection, development and use of strains with dedicated metabolites production without genetic modifications can rely on the already existing natural diversity. Here we detail a screening experiment that aims to assess the diversity of primary metabolites production in a set of 51 S. cerevisiae strains from various genetic backgrounds (wine, flor, rum, West African, sake…). To approximate winemaking conditions, we used a synthetic grape must as fermentation medium and measured seven metabolites by HPLC. Results pointed out great yield differences between strains depending on the metabolite considered. Ethanol appeared as the one with the smallest variation among our set of strains, although it was by far the most produced. A clear negative correlation between ethanol and glycerol was observed, confirming glycerol synthesis as a suitable  lever to reduce ethanol yield. Genetic groups were linked to specific metabolic yields such as high α-ketoglutarate and low acetate yields for wine strains. This study thus helps to characterise the phenotypic diversity of S. cerevisiae in a wine-like context and comforts the use of natural diversity in the development of new strains. Finally, it provides a detailed data set usable to study diversity of well known (ethanol, glycerol, acetate) or little-known (lactate) primary metabolites production, including in common commercial wine strains.
DOI: 10.5281/zenodo.8425971
title: Insights into intraspecific diversity of central carbon metabolites in Saccharomyces cerevisiae during wine fermentation

description: Supplementary data including the data set used for the " Insights into intraspecific diversity of central carbon metabolites in <em>Saccharomyces cerevisiae</em> during wine fermentation" publication. Abstract: <em>Saccharomyces cerevisiae</em>, as the workhorse of alcoholic fermentation, is a major actor in winemaking. In this context, this yeast species performs alcoholic fermentation to convert sugars from the grape must into ethanol and CO2 with outstanding efficiency as it reaches on average 92% of the maximum theoretical yield of conversion. Primary metabolites produced during fermentation have a great importance in wine where they significantly impact wine characteristics. While ethanol content contributes to the overall profile, others metabolites also have significant impacts, even when present in lower concentrations: glycerol, succinate, acetate, ⍺-ketoglutarate, lactate… <em>S. cerevisiae</em> is known for its great genetic diversity and plasticity that is directly related to its living environment, natural or technological and therefore to domestication. This leads to a wide phenotypic diversity of metabolites production. However, the range of metabolic diversity is variable and depends on the pathway considered. With the aim to improve wine quality, the selection, development and use of strains with dedicated metabolites production without genetic modifications can rely on the already existing natural diversity. Here we detail a screening experiment that aims to assess the diversity of primary metabolites production in a set of 51 <em>S. cerevisiae</em> strains from various genetic backgrounds (wine, flor, rum, West African, sake…). To approximate winemaking conditions, we used a synthetic grape must as fermentation medium and measured seven metabolites by HPLC. Results pointed out great yield differences between strains depending on the metabolite considered. Ethanol appeared as the one with the smallest variation among our set of strains, although it was by far the most produced. A clear negative correlation between ethanol and glycerol was observed, confirming glycerol synthesis as a suitable lever to reduce ethanol yield. Genetic groups were linked to specific metabolic yields such as high α-ketoglutarate and low acetate yields for wine strains. This study thus helps to characterise the phenotypic diversity of <em>S. cerevisiae</em> in a wine-like context and comforts the use of natural diversity in the development of new strains. Finally, it provides a detailed data set usable to study diversity of well known (ethanol, glycerol, acetate) or little-known (lactate) primary metabolites production, including in common commercial wine strains.
DOI: 10.6073/pasta/582eddd4dba394b9eff8429c090497a0
title: AWE01 Meteorological data from the konza prairie headquarters weather station

description: The following weather data are included in this data set: hourly: mean temperature, mean relative humidity, mean wind speed, total precipitation total solar radiation, wind direction, max wind speed (sampled on the hour; record type 1) ; daily: mean, maximum and minimum air temperature, relative humidity, total precipitation, total solar radiation; mean, maximum and minimum soil temperature, average wind speed (sampled at midnight; record type 2). These data are collectecd by a micrologger at headquarters on Konza Prairie.
DOI: 10.17630/411968f3-6191-4789-8316-90fa2c3473c4
title: DNA in the deep: Comparative molecular ecology for the conservation of beaked whales (thesis data)
DOI: 10.6073/pasta/f0accb4bd3fd338bdd00088e285f6383
title: KBN01 Konza bird nests

description: This data set is a compilation of data collected by multiple researchers describing nests of 48 bird species from across Konza Prairie. Compiled and edited into consistent format by Dylan Smith, and included in his Master’s thesis. The goal of this dataset is to compile as much data on bird nests at Konza as possible. This data set includes data from other KNZ datasets CBN01 and PBG05, as well as data contributed by Page Klug, Jim Rivers, John Zimmerman, Bill Jensen, Brett Sandercock, Alice Boyle, Bram Verheijen, Bridget Sousa, Aaron Pearse, Karl Kosciuch, and Scott Hatch. These nests were found by rope dragging, opportunistically during other activities, within nest boxes, and/or via behavioral observations. We described nest contents, and some were monitored via repeated visits. Some data are freely available, and other data are restricted access, at the discretion of each individual contributor.Methods:  These nests were found by rope dragging, opportunistically during other activities, within nest boxes, and/or via behavioral observations. We described nest contents, and some were monitored via repeated visits. This dataset contains data collected by numerous researchers throughout the history of the site, so the individual methods vary. Some data are freely available, and other data are restricted access, at the discretion of each individual contributor.
DOI: 10.17630/5f652bc1-1d66-400a-bd76-609b7de0bb25
title: Ubiquitin transfer by a RING E3 ligase occurs from a closed E2~Ub conformation (dataset)
DOI: 10.17630/29cff64a-cb08-48ab-b2fd-edd2284d9df5
title: Convenient and Scalable Synthesis of Aryldichlorophosphines and Primary Arylphosphines via Perthiophosphonic Anhydrides (dataset)

description: Dataset for paper
DOI: 10.17630/90caf33b-c69c-4c71-87a0-2e1639e47247
title: 1,3,3,3',3'-Pentaisopropyl-1,3,3',6,6',7,7'-heptahydro-1λ5-1,1'-spirobi[acenaphtho[5,6-cd][1,2,6]oxadiphosphinine]-3,3'-diium tri-iodide

description: NMR, IR and Raman data of compound 2 in the paper
DOI: 10.6084/m9.figshare.23541312
title: UMD.zip

description: The UMD is the  uterine MRI dataset to date including 300 cases of uterine myoma T2-weighted imaging (T2WI) sagittal patient images and their corresponding annotation files.
DOI: 10.6084/m9.figshare.23541312.v2
title: UMD.zip

description: The UMD is the  uterine MRI dataset to date including 300 cases of uterine myoma T2-weighted imaging (T2WI) sagittal patient images and their corresponding annotation files.
DOI: 10.17630/2d9d2752-8c6c-41cd-bbba-74a3d5fc042c
title: Sequences of all heterologously expressed gene clusters (thesis data)

description: Sequences of the uncharacterised novel gene clusters which were targetted for heterologous expression
DOI: 10.17630/6ebe0df6-8eab-4f2f-8fc3-fc766d42ad14
title: P450 sequences (thesis data)

description: Sequences of cytochrome P450s which were mined and cloned in this work
DOI: 10.17630/5827e0c6-3a9c-473a-a04a-0d218e08c6ce
title: Interplay of ferromagnetism and spin-orbit coupling in Sr4Ru3O10 (dataset)
DOI: 10.3886/e193623
title: Data and Code for: "Old Age Risks, Consumption, and Insurance"

description: In the U.S, after age 65, households face income and health risksand a large fraction of these risks are transitory. While consumptionsignificantly responds to transitory income shocks, outof-pocket medical expenses do not. In contrast, both consumptionand out-of-pocket medical expenses respond to transitory healthshocks. Thus, most U.S. elderly keep their out-of-pocket medicalexpenses close to a satiation point that varies with health. Consumptionresponds to health shocks mostly because adverse healthshocks reduce the marginal utility of consumption. The effect ofhealth on marginal utility changes the optimal transfers due tohealth shocks.
description: Population age 65+ of the United States.
DOI: 10.3886/e193623v1
title: Data and Code for: "Old Age Risks, Consumption, and Insurance"

description: In the U.S, after age 65, households face income and health risksand a large fraction of these risks are transitory. While consumptionsignificantly responds to transitory income shocks, outof-pocket medical expenses do not. In contrast, both consumptionand out-of-pocket medical expenses respond to transitory healthshocks. Thus, most U.S. elderly keep their out-of-pocket medicalexpenses close to a satiation point that varies with health. Consumptionresponds to health shocks mostly because adverse healthshocks reduce the marginal utility of consumption. The effect ofhealth on marginal utility changes the optimal transfers due tohealth shocks.
description: Population age 65+ of the United States.
DOI: 10.5281/zenodo.10529110
title: Dataset related to article "Recurrence of Basal Cell Carcinoma Treated with Surgical Excision and Histopathological Analysis with Frozen Section Technique with Complete Margin Control (CMC-FS): A 15-Year Experience of a Reference Center "

description: This record contains raw data related to article “Recurrence of Basal Cell Carcinoma Treated with Surgical Excision and Histopathological Analysis with Frozen Section Technique with Complete Margin Control (CMC-FS): A 15-Year Experience of a Reference Center"

Abstract



 Background:  Basal cell carcinoma (BCC) is the most common type of eyelid malignancy and it is considered to be dangerous due to its proximity to functionally essential organs. Early diagnosis and complete excision of the primary lesion are crucial to prevent infiltration and metastasis. The study aims to evaluate the extent of recurrence in subjects affected by BCC of the upper third of the face treated with surgical eradication and the frozen section technique with complete margin control (CMC-FS), in comparison with the gold standard Mohs micrographic surgery (MMS).

 Materials and methods:  The study included 111 patients with 111 biopsy-proven eyelid BCCs. On clinical examination, all lesions were removed with 2 mm margins clinically free of neoplasm. Prior to reconstruction, CMC-FS analysis of all surgical margins was performed on each tumor for histopathologic confirmation. Subsequently, all margins were presented for the permanent paraffin sections.

 Results:  There were 69 primary carcinomas and 42 secondary carcinomas among the 111 samples. No recurrence occurred in 109 tumors followed-up for at least 5 years, with a total recurrence rate of 1.8%. The median time between lesion excision and diagnosis of recurrence was 20 months.

 Conclusions:  at 5-year follow-up, CMC-FS guided excision of BCCs of the eyelids resulted in recurrence rates equivalent to MMS. Intraoperative microscopic control of all margins reduced the recurrence rate of the upper third of the facial BCCs, correlating with easier reconstruction with better esthetic and functional outcome.
DOI: 10.5281/zenodo.10529111
title: Dataset related to article "Recurrence of Basal Cell Carcinoma Treated with Surgical Excision and Histopathological Analysis with Frozen Section Technique with Complete Margin Control (CMC-FS): A 15-Year Experience of a Reference Center "

description: This record contains raw data related to article “Recurrence of Basal Cell Carcinoma Treated with Surgical Excision and Histopathological Analysis with Frozen Section Technique with Complete Margin Control (CMC-FS): A 15-Year Experience of a Reference Center"

Abstract



 Background:  Basal cell carcinoma (BCC) is the most common type of eyelid malignancy and it is considered to be dangerous due to its proximity to functionally essential organs. Early diagnosis and complete excision of the primary lesion are crucial to prevent infiltration and metastasis. The study aims to evaluate the extent of recurrence in subjects affected by BCC of the upper third of the face treated with surgical eradication and the frozen section technique with complete margin control (CMC-FS), in comparison with the gold standard Mohs micrographic surgery (MMS).

 Materials and methods:  The study included 111 patients with 111 biopsy-proven eyelid BCCs. On clinical examination, all lesions were removed with 2 mm margins clinically free of neoplasm. Prior to reconstruction, CMC-FS analysis of all surgical margins was performed on each tumor for histopathologic confirmation. Subsequently, all margins were presented for the permanent paraffin sections.

 Results:  There were 69 primary carcinomas and 42 secondary carcinomas among the 111 samples. No recurrence occurred in 109 tumors followed-up for at least 5 years, with a total recurrence rate of 1.8%. The median time between lesion excision and diagnosis of recurrence was 20 months.

 Conclusions:  at 5-year follow-up, CMC-FS guided excision of BCCs of the eyelids resulted in recurrence rates equivalent to MMS. Intraoperative microscopic control of all margins reduced the recurrence rate of the upper third of the facial BCCs, correlating with easier reconstruction with better esthetic and functional outcome.
DOI: 10.17630/e2d1fc63-f102-44ef-ba9c-10a168e9fd92
title: Azaborine as a Versatile Weak Donor for Deep Blue Thermally Activated Delayed Fluorescence (dataset)
DOI: 10.5519/qd.gsmohvsr
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (42 records)
DOI: 10.17630/2bb8f289-2a16-4940-9527-c71fbc21a394
title: Data underpinning "A Dissipative Reaction Network Drives Transient Solid-Liquid and Liquid-Liquid Phase Cycling of Nanoparticles"
DOI: 10.17630/3d2f2cbd-9272-4d35-9183-8f68748e8ee4
title: data underpinning "Visible Light-Mediated Cyclisation Reaction for the Synthesis of Highly-Substituted Tetrahydroquinolines and Quinolines"
DOI: 10.17630/934932a2-c721-4aff-9185-fc647ac20757
title: Sensing of Explosive Vapor by Hybrid Perovskites – Effect of Dimensionality (dataset)
DOI: 10.3886/e193824
title: Data and Code for: Pricing Power in Advertising Markets

description: Code and data accompanying the article "Pricing Power in Advertising Markets: Theory and Evidence."
description: Advertising.
DOI: 10.17630/19ce37ba-2d35-4920-bd7f-6287977de369
title: HANDBOOK OF LATIN PHONETICS

description: The dataset contains the raw data on which the 'Handbook of Latin Phonetics' (Edizioni LAS, in press for opensource digital publication) is based. This contribution offers an introduction to Latin phonetics (in Latin) and, for the first time ever, the IPA phonetic transcription of both Classical and Ecclesiastical Latin, including information on the accentuation, prosody, and syllabication of the 6000 most frequent Latin lemmas. The dataset was authored by Tommaso Spinelli, while the introduction was co-authored by Tommaso Spinelli and Cletus Pavanetto. The data builds on some of the results obtained from the Latin Diachronic Database and the First Python Phonetic Transcriber (IPA) for Classical and Ecclesiastical Latin, two digital programs that were designed and co-developed by Tommaso Spinelli and Giacomo Fenzi (https://zenodo.org/record/2562829).
DOI: 10.17630/bd44d649-c8e8-436c-bd62-3cfdb1f77bd5
title: Synthesis and Wittig Rearrangement of 3- and 4-Benzyloxyphenylphosphonamidates (dataset)
DOI: 10.3886/e195784v1
title: Teaching the 2020 Election

description: This project explores social studies teachers’ self-reported instructional decision-making about teaching the 2020 election in U.S. secondary schools. We analyzed survey responses from 1,723 secondary social studies teachers from 12 diverse states (three left-leaning, three right-leaning, six battleground) in the weeks after the election, examining self-reported pedagogies, topics taught, civic education ideology, and overall frequency of teaching about the 2020 election. <br>
description: Response Rates: 1,723 respondents out of a sampling frame of 37,000 potential participants. Leading to a 4.66% response rate.
description: mail questionnaire;
DOI: 10.17630/b047a584-c933-481e-ab71-be8c6d3e9097
title: Coordination-Controlled Electrodeposition of Palladium/Copper Thin Films onto a Pyridine-Terminated Self-Assembled Monolayer (dataset)
DOI: 10.6073/pasta/d49ac63344c2c7ce05425236981e799a
title: Vegetation species abundance via point frame from Arctic LTER dry heath tundra, Toolik Field Station, Alaska, 2017

description: Vegetation (species) abundances were measured from LTER heath tundra herbivore exclosures using the point frame method. This file contains the number of pin hits per species for each subplot.