cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5562163.v1
title: TraRECo Workshop for SRX062280 (SRR203276)

description: This is a workshop for TraRECo, a de novo transcriptome assembler with read error correction, developed by S. Yoon.The workshop include MATLAB scripts to implement the assembly and configuration file for the read data provided.Read data must be separately downloaded with accession code SRX062280.<br>Require MATLAB 2009 or later. A C-compiler that can be used for mex-setup. System memory at leat 8GB.
DOI: 10.6084/m9.figshare.12925652.v1
title: Verde para que(m) te quero: análise da relação entre fatores socioeconômicos e a distribuição espacial de praças nos bairros de Fortaleza - Script em linguagem R e planilha de parâmetros analisados

description: Script em linguagem R e planilha de parâmetros para análise da relação entre fatores socioeconômicos e a distribuição espacial de praças.<br>Este arquivo é parte da monografia "Verde para que(m) te quero: análise da relação entre fatores socioeconômicos e a distribuição espacial de praças nos bairros de Fortaleza", defendido por Laymara Xavier-Sampaio no Curso de Ciências Ambientais da Universidade Federal do Ceará em dezembro de 2019.<br> O arquivo possibilita ao público interessado uma melhor compreensão e da metodologia e auxilia na sua reprodução em pesquisas de tema similar com outros recortes espaciais. Além disso, viabiliza a validação dos dados e verificação dos resultados.<br>Legenda e fonte dos dados, na ordem das colunas, com visualização partindo da esquerda para a direita.<br>• Bairro e ID do bairro: Fortaleza em Mapas (https://mapas.fortaleza.ce.gov.br/#/) e ajustado em acordo com as alterações nos limites dos bairros identificadas.<br><br>• Área relativa de praças por bairro: Soma da área de todas as praças em um bairro dividido pela extensão deste bairro. Produto desta pesquisa, calculado a partir de dados do Canal Infocidade - Secretaria de Urbanismo e Meio Ambiente de Fortaleza (https://urbanismoemeioambiente.fortaleza.ce.gov.br/infocidade/11-arquivos-kml-s-e-kmz-s).<br>• Área relativa de favelas por bairro: Soma da área de todas as regiões catalogadas como favelas em um bairro dividido pela extensão deste bairro. Produto desta pesquisa, calculado a partir de dados do Fortaleza em Mapas (https://mapas.fortaleza.ce.gov.br/#/).<br>• Distância média: distância média de cada pixel (5m²) no bairro até praça mais próxima. Produto desta pesquisa, calculado a partir de dados do Fortaleza em Mapas (https://mapas.fortaleza.ce.gov.br/#/).<br>• EVI médio das praças por bairro: produto desta pesquisa, calculado a partir de dados do Google Engine.<br><br>• EVI médio geral por bairro: produto desta pesquisa, calculado a partir de dados do Google Engine.<br>• IDH: base de informações Dados Abertos Fortaleza. (https://dados.fortaleza.ce.gov.br/catalogo/dataset/desenvolvimento-humano-por-bairro-de-fortaleza)<br>• Renda média: arquivo dbf. associado ao shapefile "renda média" na base de dados Fortaleza em Mapas (https://mapas.fortaleza.ce.gov.br/#/).<br>• Percentual da população branca ou da população parda somada à preta: SIDRA/IBGE (https://sidra.ibge.gov.br/territorio#/N6/2304400)<br>
DOI: 10.6084/m9.figshare.20289651.v2
title: Dataset 1

description: "Data supplementary1.csv" is the data about sensitivity at 5Hz; "Data supplementary2.csv" is the data about frequency response.
DOI: 10.6084/m9.figshare.25762677.v1
title: Genome annotations of <i>Sinospelaeobdella cavatuses</i>

description: Genome annotations, along with predicted coding sequences and protein sequences.
DOI: 10.17632/7x98cvr4yx.1
title: Do isolated trees affect tadpole community and secondary production in ponds in an impacted biodiversity hotspot?

description: This dataset contains information collected during an experiment conducted in 2021-2022 in the Atlantic Forest, Cachoeiras de Macacu, RJ, Brazil. The data include metrics of secondary production, biomass, and tadpole community density under three treatments: pools under isolated trees, near the forest edge, and in open pasture.
DOI: 10.17632/7x98cvr4yx.2
title: Do isolated trees affect tadpole community and secondary production in ponds in an impacted biodiversity hotspot?

description: This dataset contains information collected during an experiment conducted in 2021-2022 in the Atlantic Forest, Cachoeiras de Macacu, RJ, Brazil. The data include metrics of secondary production, biomass, and tadpole community density under three treatments: pools under isolated trees, near the forest edge, and in open pasture.
DOI: 10.17632/7x98cvr4yx.3
title: Do isolated trees affect tadpole community and secondary production in ponds in an impacted biodiversity hotspot?

description: This dataset contains information collected during an experiment conducted in 2021-2022 in the Atlantic Forest, Cachoeiras de Macacu, RJ, Brazil. The data include metrics of secondary production, biomass, and tadpole community density under three treatments: pools under isolated trees, near the forest edge, and in open pasture.
DOI: 10.6084/m9.figshare.18132190.v1
title: Additional file 1 of Open-access database of literature derived drug-related Torsade de Pointes cases

description: Additional file 1: Excel file S1. An Excel file of the database of the literature-derived drug-related Torsade de Pointes cases.
DOI: 10.6084/m9.figshare.19091264.v1
title: Dataset for classification

description: The BBBP and HIV datasets for classification
DOI: 10.6084/m9.figshare.28342628.v1
title: Supplementary Material for: The interpretation of magnifying endoscopy for the diagnosis of colorectal lesions

description: Accurate endoscopic diagnosis is crucial for determining the appropriate treatment strategy for colorectal lesions, which may include cold snare polypectomy (CSP), endoscopic mucosal resection (EMR), or endoscopic submucosal dissection (ESD). While white light imaging (WLI) serves as the basic and initial method for endoscopic diagnosis, additional techniques such as narrow-band imaging (NBI), blue laser/light imaging (BLI), and magnified observation using pit patterns are necessary when WLI results are inconclusive. These advanced diagnostic methods enable precise identification of lesions such as adenoma, T1 cancer, and sessile serrated lesion (SSL). Furthermore, recent advancements in endoscopic systems have enhanced image clarity and detail, thereby improving diagnostic accuracy. This review provides an in-depth discussion on how magnified endoscopy, utilizing the Japan NBI Expert Team (JNET) classification with NBI/BLI and pit pattern classification with chromoendoscopy, aids in the accurate diagnosis of colorectal lesions.
DOI: 10.6084/m9.figshare.16802599.v1
title: antibody_PDBs_with_neutralization_profile.zip

description: PDB structures of the antibodies known to neutralize coronaviruses.
DOI: 10.6084/m9.figshare.26081980.v6
title: Short Playful Interaction Improves Executive Functions in Children

description: This study examined the effect of a short playful interaction as compared with control condition (a physical activity session), on children’s executive functions and mood.
DOI: 10.17632/7x98cvr4yx.4
title: Do isolated trees affect tadpole community and secondary production in ponds in an impacted biodiversity hotspot?

description: This dataset contains information collected during an experiment conducted in 2021-2022 in the Atlantic Forest, Cachoeiras de Macacu, RJ, Brazil. The data include metrics of secondary production, biomass, and tadpole community density under three treatments: pools under isolated trees, near the forest edge, and in open pasture.
DOI: 10.6084/m9.figshare.17129132.v1
title: Supplementary Material for: Comparison of a Cancer Family History Collection and Risk Assessment Tool – ItRunsInMyFamily – with Risk Assessment by Health-Care Professionals

description: <b><i>Introduction:</i></b> Primary care providers (PCPs) and oncologists lack time and training to appropriately identify patients at increased risk for hereditary cancer using family health history (FHx) and clinical practice guideline (CPG) criteria. We built a tool, “ItRunsInMyFamily” (ItRuns) that automates FHx collection and risk assessment using CPGs. The purpose of this study was to evaluate ItRuns by measuring the level of concordance in referral patterns for genetic counseling/testing (GC/GT) between the CPGs as applied by the tool and genetic counselors (GCs), in comparison to oncologists and PCPs. The extent to which non-GCs are discordant with CPGs is a gap that health information technology, such as ItRuns, can help close to facilitate the identification of individuals at risk for hereditary cancer. <b><i>Methods:</i></b> We curated 18 FHx cases and surveyed GCs and non-GCs (oncologists and PCPs) to assess concordance with ItRuns CPG criteria for referring patients for GC/GT. Percent agreement was used to describe concordance, and logistic regression to compare providers and the tool’s concordance with CPG criteria. <b><i>Results:</i></b> GCs had the best overall concordance with the CPGs used in ItRuns at 82.2%, followed by oncologists with 66.0% and PCPs with 60.6%. GCs were significantly more likely to concur with CPGs (OR = 4.04, 95% CI = 3.35–4.89) than non-GCs. All providers had higher concordance with CPGs for FHx cases that met the criteria for genetic counseling/testing than for cases that did not. <b><i>Discussion/Conclusion:</i></b> The risk assessment provided by ItRuns was highly concordant with that of GC’s, particularly for at-risk individuals. The use of such technology-based tools improves efficiency and can lead to greater numbers of at-risk individuals accessing genetic counseling, testing, and mutation-based interventions to improve health.
DOI: 10.6084/m9.figshare.18673583.v1
title: Список генотипированных животных

description: Приложение1
DOI: 10.6084/m9.figshare.20032997.v1
title: Chinese Older Adults’ Preferences and Willingness to Pay for Home and Community-based Services: A Discrete Choice Experiment

description: A multinomial logit (MNL) model, a conditional logit (CL) model, and a mixed logit (MXL) model were individually estimated using STATA V15 software.The WTP in this study was obtained in terms of a non-economic attribute coefficient/economic attribute coefficient ratio.
DOI: 10.6084/m9.figshare.7092173.v2
title: Target-Area Link-Flooding DDoS Attacks - The Crossfire Attack

description: The Crossfire attack traffic flows congest a small set of selected network links using benign low-rate flows from bots to publicly accessible servers, while degrading connectivity to the target area.
DOI: 10.6084/m9.figshare.25486726.v1
title: Supplementary Material for: Emotion regulation strategies and mental health in dementia caregivers: The moderating role of gender

description: Introduction: Providing care for a loved one with dementia can engender intense emotions that contribute to symptoms of anxiety and depression. Caregivers often attempt to regulate their emotions using strategies like cognitive reappraisal (CR; changing how they think about the situation) or expressive suppression (ES; hiding their emotions). However, men and women caregivers may differ in their use of these strategies. The current study examines gender differences in reported CR and ES usage and their associations with depression and anxiety in dementia caregivers. 

Methods: We combined data from three independent studies of informal dementia caregivers (Total N = 460) who reported on their use of CR, ES and symptoms of anxiety and depression. 

Results: Women caregivers reported greater use of CR and less use of ES compared to men. Gender moderated the association between CR and depression, such that greater use of CR in women was associated with fewer depressive symptoms, but not for men. Gender did not significantly moderate the association between ES and depression or between either emotion regulation strategy and anxiety. 

Conclusion: Findings of a unique relationship between greater CR use and less depression among women CGs, although correlational, suggest that utilizing CR may be particularly helpful for reducing depression in women caregivers. These results underscore the need for further research to determine how best to support the mental well-being of dementia caregivers.
DOI: 10.6084/m9.figshare.7376069.v1
title: Supplementary Material for: Itraconazole Attenuates Peritoneal Fibrosis Through Its Effect on the Sonic Hedgehog Signaling Pathway in Mice

description: <b><i>Background:</i></b> Peritoneal fibrosis is a devastating complication of peritoneal dialysis. However, its precise mechanism is unclear, and specific treatments have not yet been established. Recent evidence suggests that the sonic hedgehog (SHH) signaling pathway is involved in tissue fibrogenesis. Drugs that inhibit this pathway are emerging in the field of anti-fibrosis therapy. Itraconazole, an anti-fungal agent, was also recently recognized as an inhibitor of the SHH signaling pathway. In this study, we used a mouse model to investigate whether the SHH signaling pathway is involved in the development of peritoneal fibrosis and the effects of itraconazole on peritoneal fibrosis. <b><i>Methods:</i></b> Peritoneal fibrosis was induced by intraperitoneal (IP) injection of 0.1% chlorhexidine gluconate (CG) solution every other day for 4 weeks, with or without itraconazole treatment (20 mg/kg, IP injection on a daily basis). Male C57BL/6 mice were divided into 4 groups: saline group, saline plus itraconazole group, CG group, and CG plus itraconazole group. Isotonic saline was administered intraperitoneally to the control group. The peritoneal tissues were evaluated for histological changes, expression of fibrosis markers, and the main components of the SHH signaling pathway. <b><i>Results:</i></b> Peritoneal thickening was evident in the CG group and was significantly decreased by itraconazole administration (80.4 ± 7.7 vs. 28.2 ± 3.8 µm, <i>p</i> &lt; 0.001). The expression of the following SHH signaling pathway components was upregulated in the CG group and suppressed by itraconazole treatment: SHH, patched, smoothened, and glioma-associated oncogene transcription factor 1. The IP injection of CG solution increased the expression of fibrosis markers such as α-smooth muscle actin and transforming growth factor-β1 in the peritoneal tissues. Itraconazole treatment significantly decreased the expression of these markers. <b><i>Conclusion:</i></b> Our study provides the first evidence that the SHH signaling pathway may be implicated in peritoneal fibrosis. It also demonstrates that itraconazole treatment has protective effects on peritoneal fibrosis through the regulation of the SHH signaling pathway. These findings suggest that blockage of the SHH signaling pathway is a potential therapeutic strategy for peritoneal fibrosis.
DOI: 10.6084/m9.figshare.19499228.v1
title: patches and local annotations, slide 094, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.17632/28x2zwvj9n.1
title: HDHT_TEST_PART4

description: This is a 4K head talking dataset for digital people training.
DOI: 10.6084/m9.figshare.28060457.v1
title: <b>Harnessing landscape genomics to evaluate genomic vulnerability and future climate resilience in an East Asia perennial</b>

description: In this era of rapid climate change, understanding the adaptive potential of organisms is imperative for buffering biodiversity loss. Genomic forecasting provides invaluable insights into population vulnerability and adaptive potential under diverse climatic conditions, thereby facilitating management interventions, bolstering population resilience, and shaping germplasm conservation strategies tailored to specific species. Here we integrated population genomics and landscape genomics approaches, leveraging single-nucleotide polymorphisms obtained through whole-genome resequencing of 43 <i>Rheum palmatum</i> complex populations, to pinpoint adaptive variation and its significance in the context of future climates, delineate seed zones, and establish guidelines for <i>ex situ</i> germplasm conservation to capture the majority of existing adaptive diversity. Our analysis unveiled that the species complex comprised two distinct genetic clusters, exhibiting differential climate adaptation and genomic vulnerabilities across its distribution range. We also determined that the species range could be subdivided into three distinct seed zones, with varying sample requirements per seed zone corresponding to differed conservation efforts. Overall, our findings provide a genome-wide perspective on climate adaptation and valuable insights into germplasm conservation strategies aimed at enhancing population resilience in future climates, serving as a blueprint for restoration plans of other vulnerable species.
DOI: 10.6084/m9.figshare.3551535.v1
title: Appendix A. A description of the studied ecosystem and site, including Baltic Sea map, and figures depicting herring recruitment and Bosmina abundance, model statistics, and model results.

description: A description of the studied ecosystem and site, including Baltic Sea map, and figures depicting herring recruitment and Bosmina abundance, model statistics, and model results.
DOI: 10.6084/m9.figshare.3824103.v2
title: Efficient and Robust Automated Machine Learning - Section 7

description: Raw data for the experiments in Section 7 conducted for the paper https://papers.nips.cc/paper/5872-efficient-and-robust-automated-machine-learning
DOI: 10.6084/m9.figshare.5513575.v2
title: Supplementary Material for "Learning Timed Automata via Genetic Programming"

description: Content:<br>- GUI demonstrator implementing genetic programming of timed automata<br>- readme-file describing the demonstrator<br>- Graphviz dot-files of all timed automata used for the evaluation
DOI: 10.6084/m9.figshare.8044439.v4
title: Collection Results for the Comparative Study of CustomCheck4Play

description: This is the dataset provided by the aforementioned authors of a heuristic based comparative evaluation process between two Playability assessment techniques: CustomCheck4Play and the technique developed by Barcelos et al.<br>In this dataset you can find raw data from the evaluation process and data evaluation made by the authors to identify differences between both techniques. Moreover, a evaluation by knowledge levels can be checked and how they were interpreted to identify if the knowledge levels of each participant influenced in the evaluation results and process.<br>This DataSet is part of the developed work published in ICEIS 2020 by the title of: Straight to the Point - Evaluating What Matters for You: A Comparative Study on Playability Heuristic Sets<br>Link to Barcelos et al. work: https://dl.acm.org/doi/abs/10.5555/2254436.2254469<br><br>The work describing CustomCheck4Play was accepted for publishing in ICEIS 2020 conference (link not yet available)CustomCheck4Play Technical Report: https://doi.org/10.6084/m9.figshare.8044523
DOI: 10.6084/m9.figshare.25287700.v1
title: Supplementary Material for: Vagal sparing gastrectomy: A systematic review and meta-analysis

description: Radical gastrectomy is associated with significant functional complications. In appropriate patients may be amenable to less invasive resection aimed at preserving the vagal trunks. The aim of this systematic review and meta-analysis is to assess the functional consequences and oncological safety of vagal sparing gastrectomy (VSG) compared to conventional non-vagal sparing gastrectomy (CG). 

A systematic review of four databases was undertaken for studies published between 1/11990 and 15/122021, comparing patients who underwent VSG to CG. 
We meta-analysed the following outcomes: operative time, blood loss, nodal yield, days to flatus, body weight changes, as well as the incidence of post-operative cholelithiasis, diarrhoea, delayed gastric emptying, and dumping syndrome. 

Thirty studies were included in the meta-analysis with a selection of studies qualitatively analysed. VSG was associated with a lower rate of cholelithiasis (OR 0.25, 95% CI 0.15-0.41, p&lt;0.010) and early dumping syndrome (OR 0.42, 95% CI 0.21 – 0.86; p=0.02), less blood loss (MD -51 ml, 95% CI -89.11 to -12.81 ml, p=0.009), less long term weight loss (MD 2.03%, 95% CI 0.31-3.76%, p=0.02) and a faster time to flatus (MD -0.42 days, 95% CI -0.48 – 0.36, p&lt;0.001). There was no significant difference in nodal harvest, overall survival, and all other endpoints.

VSG significantly reduces the incidence of post-operative cholelithiasis and dumping syndrome, decreases weight loss and facilitates an earlier return of gut motility. Although technically more challenging, VSG should be considered for prophylactic surgery.
DOI: 10.6084/m9.figshare.25272256.v1
title: Supplementary Material for: Sex and gender publications in brain health: a mapping review of the Asia-Pacific region

description: Introduction. Reporting of sex and gender analysis in medical research has been shown to improve quality of the science and ensures findings are applicable to women and men. There is conflicting evidence on whether efforts by funding agencies and medical journals to encourage reporting of sex and gender analysis has resulted in tangible improvements. This study mapped the inclusion of sex and gender analysis in stroke and dementia research conducted in the Asia-Pacific region. 
Methods. A systematic search for Asia-Pacific stroke and dementia research was conducted in PubMed and papers included from the period 2012 to 2022. Eligible studies were reviewed for inclusion of a primary sex or gender focus and categorized by type of sex and gender analysis. Author gender was determined using an algorithm and its associations with inclusion of sex and gender analysis examined.
Results. Total Asia-Pacific publications increased from 109 in 2012 to 313 in 2022, but the rate of studies with a primary sex or gender focus did not increase significantly (R2 = 0.06, F(1,9) = 0.59, p = 0.46). Australia, China, India, Japan and South Korea produced the most publications over the study period and were the only countries with at least 50 publications. The impact of author gender was mixed, with female first authorship associated with inclusion of sex or gender analysis and last female authorship associated with studies having a primary sex or gender focus. 
Conclusions. In the Asia-Pacific, brain health research is currently centered around high income countries and efforts are needed to ensure research findings are applicable through out the region. While there was a general increase in brain health publications over the last decade, the rate of sex and gender analysis was unchanged. This demonstrates that even with efforts in some countries in place, there is currently a lack of progress in the Asia-Pacific region to produce more research focusing on sex and gender analysis.