cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24259573.v1
title: OpenDengue V1.2

description: The OpenDengue project aims to build and maintain a database of dengue case counts for every dengue-affected country worldwide since 1990. We collate data from a range of publicly available sources including ministry of health websites, peer-reviewed publications and other disease databases.The complete details, methodologies, and findings associated with this dataset are available in our research paper [URL to be confirmed].The latest database is available on our OpenDengue website (https://opendengue.org/data.html). Past and current versions are also available in the Opendengue Github repository (https://github.com/OpenDengue/master-repo).<b>File descriptor</b><b>Global summaries of data</b>: We provide three global summaries of the data in OpenDengue. We provide the best national estimate (<b>National_extract_v1_2.csv</b>), the best temporal resolution (<b>Temporal_extract_v1_2.csv</b>) and the best spatial resolution (<b>Spatial_extract_v1_2.csv</b>). This allows users to customise their data extraction based on their research question. Each row in the data table contains a unique, non-overlapping location and time period with the associated dengue case data. The below codebook describes each variable.adm_0_name : administrative level 0/country nameadm_1_name : administrative level 1 nameadm_2_name : administrative level 2 namefull_name : full place nameISO_A0 : ISO country codeFAO_GAUL_code : Food and Agricultural Organization Global Administrative Unit Layer CodeRNE_iso_code : RNaturalEarth ISO codeIBGE_code : Brazilian Instituto Brasileiro de Geografia e Estatística (IBGE) codecalendar_start_date : the start date in calendar time with the format YYYY-mm-ddcalendar_end_date : the end date in calendar time with the format YYYY-mm-ddYear : yeardengue_total : the total dengue case count relating to the period and place (see dengue classification protocol and dengue double count protocol)case_definition_standardised : case definition after standardisationS_res : spatial resolutionT_res : temporal resolutionUUID : Universal Unique Identifier relating to the source file from which the data originates<b>2.</b><b> </b><b>Source files (source_files_V1.2.zip)</b>: These source files contain the raw data used in the creation of the OpenDengue database and can be accessed by their UUIDs.<b>3. Metadata (metadata_V1.2.xlsx)</b>: Metadata relevant to the original data source category that was searched, located, and extracted is included
DOI: 10.5281/zenodo.10054117
title: Pissodes strobi v1, White pine weevil - genome resources and analysis

description: BTL lab at the GSC, Vancouver Canada
Curated and released by K.K. Gagalova
Please cite "The genome of the forest insect pest Pissodes strobi reveals genome expansion and evidence of a Wolbachia endosymbiont" Gagalova & Whitehill, et al., 2022 https://doi.org/10.1093/g3journal/jkac038

wpw resources publication - genomics and annotation resources used in the paper
Phylogeny beetles - raw data for Figure 1
Repeats analysis - raw data for Figure 2
Repeat explorer comparative - RepeatExplorer analysis as in "Annotation of complex genomes for comparative genomics"
Phylogeny Wolbachia - raw data for Figure 3
Genome annotation - raw data and step-by-step annotations for protein coding genes. Includes structural, funnctional and polishing steps
 Sex determination - analysis of genome coverage for sex determination (hypothesis)
DOI: 10.5281/zenodo.10054116
title: Pissodes strobi v1, White pine weevil - genome resources and analysis

description: BTL lab at the GSC, Vancouver Canada
Curated and released by K.K. Gagalova
Please cite "The genome of the forest insect pest Pissodes strobi reveals genome expansion and evidence of a Wolbachia endosymbiont" Gagalova & Whitehill, et al., 2022 https://doi.org/10.1093/g3journal/jkac038

wpw resources publication - genomics and annotation resources used in the paper
Phylogeny beetles - raw data for Figure 1
Repeats analysis - raw data for Figure 2
Repeat explorer comparative - RepeatExplorer analysis as in "Annotation of complex genomes for comparative genomics"
Phylogeny Wolbachia - raw data for Figure 3
Genome annotation - raw data and step-by-step annotations for protein coding genes. Includes structural, funnctional and polishing steps
 Sex determination - analysis of genome coverage for sex determination (hypothesis)
DOI: 10.6084/m9.figshare.24460525
title: Basic_Soil_parameters

description: Basic soil parameters of soils used in the experiment: Two soils, overgrown by the invasive <i>I. glandulifera </i>and by the native <i>U. dioica </i>were characterized for their copper retention ability assessed by a sequential extraction after seven days flooding with three different copper concentrations.
DOI: 10.6084/m9.figshare.24460177
title: Animal versus plant protein sources in marine ingredient-free aquaponic diets – A case study on nutrient release and accumulation of African catfish (<i>Clarias gariepinus</i>) reared in RAS

description: Aquaponic systems have potential to improve water and nutrient use efficiency compared to separately operated recirculating aquaculture systems (RAS) and hydroponic facilities. However, fish feeds are optimized for fish performance and low effluent nutrient discharge instead of integrated production of fish and plants, often leading to deficiencies of certain dissolved plant nutrients in RAS water. This study tested the effect of gradually replacing a blend of animal by-products (poultry by-product meal, catfish by-product meal, poultry blood meal) in a marine ingredient-free and entirely animal protein-based diet with a blend of common plant protein sources in four quasi-realistic isonitrogenous (42% crude protein) and isocaloric (20 MJ/kg) diets for African catfish on growth performance, body composition and nutrient release in dissolved and solid form into RAS water. Reducing the contribution of animal proteins to dietary protein in favor of plant proteins from 100% over 75% to 50% and 25% resulted in the best biomass gain (%), feed conversion ratio (dry matter basis) and protein efficiency ratio for the 50% level, with differences, however, non-significant compared to the 100% and 75% level, whereas the 25% level led to significant impairments regarding these growth indices as well as body ash, P and Ca compared to all other diets. No differences were observed for total dissolved N release per unit of feed between diets. Higher animal protein contribution lead to significantly higher release of dissolved P and Ca into RAS water, whereas increasing plant protein contribution caused significantly higher release of dissolved K, Mg and B. A mass balance of dietary nutrient fate revealed that N, P, K, S and Mg primarily ended up in fish biomass and in dissolved form in RAS water rather than in collected feces, while Ca, Fe, Mn, Zn and Cu predominantly ended up in feces and fish biomass rather than in dissolved form in RAS water. Modeling daily RAS water exchange rates needed to achieve the dissolved N concentration of a standard hydroponic nutrient solution on the basis of dissolved N release per unit of feed revealed that the entirely animal protein-based diet could reach 100%, 86% and 5% of the required dissolved N, P and K concentrations and that the diet with the highest plant protein inclusion could reach 100%, 14% and 15%, both at an exchange rate of 118 L/kg of feed/day. Results are discussed regarding the potential of animal by-products and plant proteins in aquaponic diets.
DOI: 10.6084/m9.figshare.24460177.v1
title: Animal versus plant protein sources in marine ingredient-free aquaponic diets – A case study on nutrient release and accumulation of African catfish (<i>Clarias gariepinus</i>) reared in RAS

description: Aquaponic systems have potential to improve water and nutrient use efficiency compared to separately operated recirculating aquaculture systems (RAS) and hydroponic facilities. However, fish feeds are optimized for fish performance and low effluent nutrient discharge instead of integrated production of fish and plants, often leading to deficiencies of certain dissolved plant nutrients in RAS water. This study tested the effect of gradually replacing a blend of animal by-products (poultry by-product meal, catfish by-product meal, poultry blood meal) in a marine ingredient-free and entirely animal protein-based diet with a blend of common plant protein sources in four quasi-realistic isonitrogenous (42% crude protein) and isocaloric (20 MJ/kg) diets for African catfish on growth performance, body composition and nutrient release in dissolved and solid form into RAS water. Reducing the contribution of animal proteins to dietary protein in favor of plant proteins from 100% over 75% to 50% and 25% resulted in the best biomass gain (%), feed conversion ratio (dry matter basis) and protein efficiency ratio for the 50% level, with differences, however, non-significant compared to the 100% and 75% level, whereas the 25% level led to significant impairments regarding these growth indices as well as body ash, P and Ca compared to all other diets. No differences were observed for total dissolved N release per unit of feed between diets. Higher animal protein contribution lead to significantly higher release of dissolved P and Ca into RAS water, whereas increasing plant protein contribution caused significantly higher release of dissolved K, Mg and B. A mass balance of dietary nutrient fate revealed that N, P, K, S and Mg primarily ended up in fish biomass and in dissolved form in RAS water rather than in collected feces, while Ca, Fe, Mn, Zn and Cu predominantly ended up in feces and fish biomass rather than in dissolved form in RAS water. Modeling daily RAS water exchange rates needed to achieve the dissolved N concentration of a standard hydroponic nutrient solution on the basis of dissolved N release per unit of feed revealed that the entirely animal protein-based diet could reach 100%, 86% and 5% of the required dissolved N, P and K concentrations and that the diet with the highest plant protein inclusion could reach 100%, 14% and 15%, both at an exchange rate of 118 L/kg of feed/day. Results are discussed regarding the potential of animal by-products and plant proteins in aquaponic diets.
DOI: 10.6084/m9.figshare.24355725
title: Interactive 3D-web graphs for each joint in the cervical series for all specimens from The functional significance of aberrant cervical counts in sloths: insights from automated exhaustive analysis of cervical range of motion

description: Interactive 3D graph for joint C2-3/C3-4/C4-5/C5-6/C6-7/C7-8 with 3D pose space (points) and alpha shape (translucent shape) for all specimens with that joint in their cervical series. Joint number at the top, specimen list on the right, and preset options for the 3D view of the coordinate system on the top left. Clicking on the preset options “XY”, “YZ”, “XZ”, and “XYZ” positions the graph to visualize the three 2D planes – xy-,yz-, and xz-plane, respectively – as well as an overview of all three axes together (“XYZ”). Scrolling zooms in and out. Left-clicking on the graph and moving the mouse over the window changes the angle of the view. Double clicking on one specimen isolates the path, clicking once removes/adds the path to the graph. Hovering over the points shows the exact coordinates and the associated specimen.
DOI: 10.6084/m9.figshare.24355725.v1
title: Interactive 3D-web graphs for each joint in the cervical series for all specimens from The functional significance of aberrant cervical counts in sloths: insights from automated exhaustive analysis of cervical range of motion

description: Interactive 3D graph for joint C2-3/C3-4/C4-5/C5-6/C6-7/C7-8 with 3D pose space (points) and alpha shape (translucent shape) for all specimens with that joint in their cervical series. Joint number at the top, specimen list on the right, and preset options for the 3D view of the coordinate system on the top left. Clicking on the preset options “XY”, “YZ”, “XZ”, and “XYZ” positions the graph to visualize the three 2D planes – xy-,yz-, and xz-plane, respectively – as well as an overview of all three axes together (“XYZ”). Scrolling zooms in and out. Left-clicking on the graph and moving the mouse over the window changes the angle of the view. Double clicking on one specimen isolates the path, clicking once removes/adds the path to the graph. Hovering over the points shows the exact coordinates and the associated specimen.
DOI: 10.6084/m9.figshare.24355731
title: Video of the ROM workflow in Maya from The functional significance of aberrant cervical counts in sloths: insights from automated exhaustive analysis of cervical range of motion

description: Video showing the workflow to assess the ROM of one vertebral joint in Maya with the MEL scripts mentioned in the main text and freely available for download at „https://bitbucket.org/xromm/xromm_other_mel_scripts/src/main/joint_mobility/)“.
DOI: 10.6084/m9.figshare.24355731.v1
title: Video of the ROM workflow in Maya from The functional significance of aberrant cervical counts in sloths: insights from automated exhaustive analysis of cervical range of motion

description: Video showing the workflow to assess the ROM of one vertebral joint in Maya with the MEL scripts mentioned in the main text and freely available for download at „https://bitbucket.org/xromm/xromm_other_mel_scripts/src/main/joint_mobility/)“.
DOI: 10.18112/openneuro.ds004815.v1.0.1
title: Selective attention sharpens population receptive fields in human auditory cortex
DOI: 10.5517/ccdc.csd.cc2ffl4m
title: CCDC 2247380: Experimental Crystal Structure Determination

description: Related Article: Yeow-Chuan Teo, Dexter Loh, Bi-Xiang Leong, Zheng-Feng Zhang, Ming-Der Su, Cheuk-Wai So|2023|Inorg.Chem.|62|16867|doi:10.1021/acs.inorgchem.3c02424
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ffl8r
title: CCDC 2247384: Experimental Crystal Structure Determination

description: Related Article: Yeow-Chuan Teo, Dexter Loh, Bi-Xiang Leong, Zheng-Feng Zhang, Ming-Der Su, Cheuk-Wai So|2023|Inorg.Chem.|62|16867|doi:10.1021/acs.inorgchem.3c02424
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fl0sv
title: CCDC 2251647: Experimental Crystal Structure Determination

description: Related Article: Alan Mendieta, Juan Raúl Álvarez-Idaboy, Víctor M. Ugalde-Saldívar, Marcos Flores-Álamo, Alfonso Armenta, Gerardo Ferrer-Sueta, Laura Gasque|2023|Inorg.Chem.|62|16677|doi:10.1021/acs.inorgchem.3c01236
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fl0tw
title: CCDC 2251648: Experimental Crystal Structure Determination

description: Related Article: Alan Mendieta, Juan Raúl Álvarez-Idaboy, Víctor M. Ugalde-Saldívar, Marcos Flores-Álamo, Alfonso Armenta, Gerardo Ferrer-Sueta, Laura Gasque|2023|Inorg.Chem.|62|16677|doi:10.1021/acs.inorgchem.3c01236
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fl0vx
title: CCDC 2251649: Experimental Crystal Structure Determination

description: Related Article: Alan Mendieta, Juan Raúl Álvarez-Idaboy, Víctor M. Ugalde-Saldívar, Marcos Flores-Álamo, Alfonso Armenta, Gerardo Ferrer-Sueta, Laura Gasque|2023|Inorg.Chem.|62|16677|doi:10.1021/acs.inorgchem.3c01236
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g6ql0
title: CCDC 2270582: Experimental Crystal Structure Determination

description: Related Article: Rajrani Narvariya, Adimulam Harinath, Archana Jain, Tarun K. Panda|2024|Inorg.Chim.Acta|559|121781|doi:10.1016/j.ica.2023.121781
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g6qm1
title: CCDC 2270583: Experimental Crystal Structure Determination

description: Related Article: Rajrani Narvariya, Adimulam Harinath, Archana Jain, Tarun K. Panda|2024|Inorg.Chim.Acta|559|121781|doi:10.1016/j.ica.2023.121781
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g6qn2
title: CCDC 2270584: Experimental Crystal Structure Determination

description: Related Article: Rajrani Narvariya, Adimulam Harinath, Archana Jain, Tarun K. Panda|2024|Inorg.Chim.Acta|559|121781|doi:10.1016/j.ica.2023.121781
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g6qp3
title: CCDC 2270585: Experimental Crystal Structure Determination

description: Related Article: Rajrani Narvariya, Adimulam Harinath, Archana Jain, Tarun K. Panda|2024|Inorg.Chim.Acta|559|121781|doi:10.1016/j.ica.2023.121781
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g6qr5
title: CCDC 2270587: Experimental Crystal Structure Determination

description: Related Article: Rajrani Narvariya, Adimulam Harinath, Archana Jain, Tarun K. Panda|2024|Inorg.Chim.Acta|559|121781|doi:10.1016/j.ica.2023.121781
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gn39k
title: CCDC 2283438: Experimental Crystal Structure Determination

description: Related Article: Min Chen, Dameng Sun, Jiahe Li, Zhiyuan Wang, Hongming Liu, Lixia Pan, Hailan Chen, Zhen Ma|2023|New J.Chem.|47|18785|doi:10.1039/D3NJ03445C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gn3bl
title: CCDC 2283439: Experimental Crystal Structure Determination

description: Related Article: Min Chen, Dameng Sun, Jiahe Li, Zhiyuan Wang, Hongming Liu, Lixia Pan, Hailan Chen, Zhen Ma|2023|New J.Chem.|47|18785|doi:10.1039/D3NJ03445C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gn3cm
title: CCDC 2283440: Experimental Crystal Structure Determination

description: Related Article: Min Chen, Dameng Sun, Jiahe Li, Zhiyuan Wang, Hongming Liu, Lixia Pan, Hailan Chen, Zhen Ma|2023|New J.Chem.|47|18785|doi:10.1039/D3NJ03445C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gndj2
title: CCDC 2283724: Experimental Crystal Structure Determination

description: Related Article: Subhankar Biswas, Siddhartha K. Purkayastha, Ankur K. Guha, Subhas Chandra Pan|2023|Chem.Commun.|59|12156|doi:10.1039/D3CC03713D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gndk3
title: CCDC 2283725: Experimental Crystal Structure Determination

description: Related Article: Subhankar Biswas, Siddhartha K. Purkayastha, Ankur K. Guha, Subhas Chandra Pan|2023|Chem.Commun.|59|12156|doi:10.1039/D3CC03713D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gnx68
title: CCDC 2284210: Experimental Crystal Structure Determination

description: Related Article: Guoqi Zhang, Haisu Zeng, Nora Zadori, Camila Marino, Shengping Zheng, Michelle C. Neary|2023|RSC Advances|13|28089|doi:10.1039/D3RA06113B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.