cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/kfg48a
title: Mali (2008) : Determinants de l'utilisation des methodes contraceptives modernes chez les femmes en age de procreer ayant un besoin de contraception dans les regions de Segou et Sikasso Premier passage

description: Cette etude TRaC de base a pour objectif d'identifier les facteurs qui influencent l'utilisation des methodes contraceptives modernes au Mali, et plus precisement dans les regions de Segou et de Sikasso. L'etude a ete realisee au cours du mois de Mai 2008, aupres d'un echantillon representatif de 2032 femmes agees de 15-49 ans vivant en milieu rural et urbain des deux regions. L'outil de collecte de cette enquete etait un questoinnaire individuel precode. Ce questionnaire s'articulait autour des 4 sections suivantes: caracteristiques sociodemographiques; exposition aux activites de PSI/Mali; comportement en matiere de planification familiale; et questions de connaissances, attitudes, et opinions sur la planification familiale.
DOI: 10.7910/dvn/p4dfks
title: Land use satellite image 622-321 (24-abr-05)
DOI: 10.15468/dl.h4qauk
title: Occurrence Download

description: A dataset containing 1507 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "Geometry POLYGON((-131.40647 20.4793,-54.9371 20.4793,-54.9371 53.7556,-131.40647 53.7556,-131.40647 20.4793))",
 "TaxonKey is Myriophyllum spicatum"
 ]
}

 The dataset includes 1507 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045429-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjazea
title: Occurrence Download

description: A dataset containing 129 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pouteria decorticans"
 ]
}

 The dataset includes 129 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045430-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57932/c1cf5343-8e67-426c-8b6c-18bb47cc2b98
title: IASI climatology

description: Monthly IASI clear-sky climatology of infrared brightness temperature over 2008-2014 (files bt_ClimMon_IASI_01.nc to bt_ClimMon_IASI_12.nc). Land area fraction (sftlf_fx_CNRM-CM6-1_amip_r1i1p1f2.nc ) and area of ARPEGE-Cimat gridcells (cw_fx_CNRM-CM6-1_amip_r1i1p1f2.nc), used to compute averages over oceans and land surfaces.
DOI: 10.57932/4bd97181-c200-4f76-8bcc-ca1ce8c6a7e9
title: ARPEGE-Climat climatology

description: Monthly ARPEGE-Climat clear-sky climatology of infrared brightness temperature over 2008-2014 (files bt_ClimMon_CNRM-CM6-1_amip_r1i1p1f2_01.nc to bt_ClimMon_CNRM-CM6-1_amip_r1i1p1f2_12.nc). Land area fraction (sftlf_fx_CNRM-CM6-1_amip_r1i1p1f2.nc ) and area of ARPEGE-Cimat gridcells (cw_fx_CNRM-CM6-1_amip_r1i1p1f2.nc), used to compute averages over oceans and land surfaces.
DOI: 10.5281/zenodo.17306320
title: Heterogeneity in environmental stiffness alone shapes tissues and guides cells revealing their mechanical state

description: Here the experimental data for the average quantities used in the paper Heterogeneity in environmental stiffness alone shapes tissues and guides cells revealing their mechanical state.
DOI: 10.5281/zenodo.17306321
title: Heterogeneity in environmental stiffness alone shapes tissues and guides cells revealing their mechanical state

description: Here the experimental data for the average quantities used in the paper Heterogeneity in environmental stiffness alone shapes tissues and guides cells revealing their mechanical state.
DOI: 10.5285/7f11ef69-36e6-4e42-b826-f11c158a0845
title: Audio-recordings of birds from plots invaded by non-native plants (Rhododendron ponticum and Prunus laurocerasus) and non-invaded plots in four woodlands, Wales, 2023

description: This dataset contains audio recordings of birds in four woodland plots invaded by the non-native species Rhododendron ponticum or Prunus laurocerasus and non-invaded control plots in the same woodlands. The four locations were in Wales; Nercwys Forest; Penllergare, Swansea; Aberkenfig; and Wye Valley, Cleddon Shoots. 

Recordings were conducted in hourly intervals in the morning and evening for one or two days in each location, between June and September 2023. The aim of the data collection was to analyse if any differences in the number of bird species and frequency of bird calls could be found between invaded and non-invaded woodland plots. This is the complete dataset. The work was supported by the Natural Environment Research Council (Grant NE/X013332/1).
description: Pairs of audio recorders (AudioMoth v1.2.0, Open Acoustic Devices) were placed by volunteer citizen scientists in four woodland locations in Wales between June and September 2023. One was placed at the invaded plot and one at the control plot. The locations and sites were chosen by the volunteers who were recruited through events run in collaboration with the North Wales Wildlife Trust for engaged members of the public interested in citizen science and invasive species. Volunteer site choice was discussed with the research team before the recordings took place. Volunteers sent the data back to the research team or uploaded all files to an online data storage. Data were checked by the research team to verify recording had taken place. The data were not changed before uploading to the EIDC repository.
DOI: 10.15468/dl.ku2abc
title: Occurrence Download

description: A dataset containing 38821729 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 38821729 records from 4446 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045404-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.scdw7x
title: Occurrence Download

description: A dataset containing 369 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anomoia purmunda (Harris, 1780)"
 ]
}

 The dataset includes 369 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003317-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00002898.0
title: Available datapackage for study 'A Study to Assess the Efficacy, Safety, Tolerability, and Pharmacokinetics of Multiple Doses of ISIS 396443 Delivered Intrathecally to Patients With Infantile-Onset Spinal Muscular Atrophy'

description: The primary objective is to examine the clinical efficacy of multiple doses of nusinersen (ISIS 396443) administered intrathecally to participants with Infantile-Onset Spinal Muscular Atrophy (SMA). The secondary objectives are to examine the safety and tolerability of multiple doses of nusinersen administered intrathecally to participants with infantile-onset SMA and to examine the cerebral spinal fluid (CSF) and plasma Pharmacokinetics (PK) of multiple doses of nusinersen administered intrathecally to participants with infantile-onset SMA.
DOI: 10.25934/pr00002573.0
title: Available IPD datapackage for study 'A Phase 3, Randomized, Double-Blind, Sham-Procedure Controlled Study to Assess the Clinical Efficacy and Safety of ISIS 396443 Administered Intrathecally in Patients With Infantile-onset Spinal Muscular Atrophy'

description: The primary objective of the study is to examine the clinical efficacy of nusinersen (ISIS 396443) administered intrathecally (IT) to participants with infantile-onset with infantile-onset spinal muscular atrophy (SMA). The secondary objective of the study is to examine the safety and tolerability of nusinersen administered intrathecally to participants with infantile-onset SMA.
DOI: 10.15468/dl.z6nh9n
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Monimopetalum chinense Rehder"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006691-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ewrw94
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The reptiles and amphibians collection (RA) of the Muséum national d'Histoire Naturelle (MNHN - Paris)",
 "Country is Croatia"
 ]
}

 The dataset includes 84 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006689-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgnmfd
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Annotated checklist of the family Scathophagidae (Diptera) in Central Europe, with new faunistics data on some species",
 "Country is Croatia"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006692-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5q9m2
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Croton perintricatus Croizat"
 ]
}

 The dataset includes 29 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006690-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110820168
title: Persepolis Fortification Elamite Tablet 2272.101, Fort 2272.101

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2272.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Upper left, upper right and lower right corners broken off. Damage on obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110820112
title: Persepolis Fortification Elamite Tablet 2267.101, Fort 2267.101

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] Fort 2267.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on right edge. ❧ [Physical Object Note:] Left side of tablet missing.
DOI: 10.25549/inscriptifact-ouc110820688
title: Persepolis Fortification Elamite Tablet 2272.102, Fort 2272.102

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2272.102 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Borken right edge, upper edge, most of left edge.
DOI: 10.25549/inscriptifact-ouc110820725
title: Persepolis Fortification Elamite Tablet 2267.101, Fort 2267.101

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] Fort 2267.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on right edge. ❧ [Physical Object Note:] Left side of tablet missing.
DOI: 10.25549/inscriptifact-ouc110820705
title: Persepolis Fortification Elamite Tablet 2272.102, Fort 2272.102

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2272.102 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Borken right edge, upper edge, most of left edge.
DOI: 10.25549/inscriptifact-ouc110820703
title: Persepolis Fortification Elamite Tablet 2272.102, Fort 2272.102

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2272.102 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Borken right edge, upper edge, most of left edge.
DOI: 10.25549/inscriptifact-ouc110820699
title: Persepolis Fortification Elamite Tablet 2272.102, Fort 2272.102

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2272.102 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Borken right edge, upper edge, most of left edge.
DOI: 10.5281/zenodo.15384902
title: Metadata for Multi-dimensional Models of Mixed H/He Flames in X-ray Bursts

description: Metadata, input files, and scripts used for the paper “Multi-dimensional Models of Mixed H/He Flames in X-ray Bursts”.

Each of the run_* directories corresponds to a Castro run using CNO_He_burn. They contain:



inputs.*: the inputs file used for the run

job_info: information about the run, including the total GPU time used, all the compilation options, git hashes of Castro, AMReX, and Microphysics, and the parsed input file settings. Extracted from the last full plotfile for each run.

density_profile.dat: generated by weighted_profile.py

front_tracking*.dat: generated by the front_tracker.py script

any Slurm submission scripts used


Python scripts:



flame_speed.py: reads flame front tracking data generated by the front_tracker.py, performs fits, makes a plot (figure 3), and writes LaTeX tables containing the fit parameters and velocities at different times (tables 2 and 3)

make_plots.py: used to generate figures 2, 4, and 6

weighted_profile.py: reads all the plotfiles for a run and generates the weighted profile data for figure 2

interactive.py: meant to be loaded into an interactive IPython session as ipython -i interactive.py; imports util.py


Helper libraries:



plot_utils.py: contains common code used in make_plots.py

util.py: contains functions for interactively inspecting the reactions occurring in a plotfile. Notably, network_plot() was used to generate figure 5.
DOI: 10.5281/zenodo.15384901
title: Metadata for Multi-dimensional Models of Mixed H/He Flames in X-ray Bursts

description: Metadata, input files, and scripts used for the paper “Multi-dimensional Models of Mixed H/He Flames in X-ray Bursts”.

Each of the run_* directories corresponds to a Castro run using CNO_He_burn. They contain:



inputs.*: the inputs file used for the run

job_info: information about the run, including the total GPU time used, all the compilation options, git hashes of Castro, AMReX, and Microphysics, and the parsed input file settings. Extracted from the last full plotfile for each run.

density_profile.dat: generated by weighted_profile.py

front_tracking*.dat: generated by the front_tracker.py script

any Slurm submission scripts used


Python scripts:



flame_speed.py: reads flame front tracking data generated by the front_tracker.py, performs fits, makes a plot (figure 3), and writes LaTeX tables containing the fit parameters and velocities at different times (tables 2 and 3)

make_plots.py: used to generate figures 2, 4, and 7

weighted_profile.py: reads all the plotfiles for a run and generates the weighted profile data for figure 2

interactive.py: meant to be loaded into an interactive IPython session as ipython -i interactive.py; imports util.py


Helper libraries:



plot_utils.py: contains common code used in make_plots.py

util.py: contains functions for interactively inspecting the reactions occurring in a plotfile. Notably, network_plot() was used to generate figures 5 and 6.
DOI: 10.5281/zenodo.15468673
title: Metadata for Multi-dimensional Models of Mixed H/He Flames in X-ray Bursts

description: Metadata, input files, and scripts used for the paper “Multi-dimensional Models of Mixed H/He Flames in X-ray Bursts”.

Each of the run_* directories corresponds to a Castro run using CNO_He_burn. They contain:



inputs.*: the inputs file used for the run

job_info: information about the run, including the total GPU time used, all the compilation options, git hashes of Castro, AMReX, and Microphysics, and the parsed input file settings. Extracted from the last full plotfile for each run.

density_profile.dat: generated by weighted_profile.py

front_tracking*.dat: generated by the front_tracker.py script

any Slurm submission scripts used


Python scripts:



flame_speed.py: reads flame front tracking data generated by the front_tracker.py, performs fits, makes a plot (figure 3), and writes LaTeX tables containing the fit parameters and velocities at different times (tables 2 and 3)

make_plots.py: used to generate figures 2, 4, and 7

weighted_profile.py: reads all the plotfiles for a run and generates the weighted profile data for figure 2

interactive.py: meant to be loaded into an interactive IPython session as ipython -i interactive.py; imports util.py


Helper libraries:



plot_utils.py: contains common code used in make_plots.py

util.py: contains functions for interactively inspecting the reactions occurring in a plotfile. Notably, network_plot() was used to generate figures 5 and 6.
DOI: 10.22002/sd9n8-y8t52
title: Xanthomonas vs Caulobac (-T1SS)

description: Xac WT pBRaφ pBRR MCS5 GFP (code 9) vs Caulobacter (delta-cdzAB) competition. Caulobacter strain is a T1SS deletion strain.
description: <strong>Tilt Series Date:</strong> 2017-10-21</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Xanthomonas citri</p>
<strong>Strain:</strong> pv citri 306</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Chuck Farah lab made the Xac strain, Caulobacter strain is from Laub lab. Data collected and processed by Mohammed Kaplan and Debnath Ghosal.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 4 µL mixture of Xac and Caulobacter cells were pipetted on top of Au-Finder grids. These grids were glow discharged in advance and kept on top of Agar pads. Carbon side up. These were then kept at the BSL-II hood and left for about 10 min before freezing.</p>
<strong>Sample Preparation:</strong> Freezing conditions: Blot force 6, wait time=0, drain time =1 sec, blot manually.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-10-21-52/rawdata/</p>Xan_CaulDelT1_20172110d0010.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.5 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-10-21-52/rawdata/Xan_CaulDelT1_20172110d0010.mrc"
        > <i class="download icon"></i> Download </a></p>

        Xan_CaulDelT1_20172110d0010.rec,  Reconstruction (Pixel Size 1.56 nm), 889.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-10-21-52/3dimage_89752/Xan_CaulDelT1_20172110d0010.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/3s7em-pph43
title: V. cholerae RT4236 (stationary)

description: Classical strain with ctxA deletion.Cell harbors pMT5 plasmid (inducible toxT).
description: <strong>Tilt Series Date:</strong> 2015-04-09</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O395-N1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Ronald K. Taylor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> ON cultures of Vibrio cholerae O395 NI pMT5 grown in LB pH 6.5, 1 mM IPTG and 100 ug/mL ampicilin</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 2.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-04-09-38/rawdata/</p>20150409_AK005_10037.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-04-09-38/rawdata/20150409_AK005_10037.mrc"
        > <i class="download icon"></i> Download </a></p>

        20150409_AK005_10037_part121_2.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-04-09-38/3dimage_53832/20150409_AK005_10037_part121_2.rec"
        > <i class="download icon"></i> Download </a></p>