cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.js08q/1
title: JordeweiherData

description: Collection date, ecotype and colortype assignment, color measurements, stable isotope, stomach content, nest depth, linear morphometric and geometric morphometric data.
DOI: 10.5061/dryad.k1rd0/1
title: R.robini male morph number counted after experimental evolution in two types of environment.

description: Number of alternative male morphs assessed after 14 generations of experimental evolution in two types of environment differing in complexity level (simple and complex). Two levels of initial morph ratio were used (low and high) which gives 4 combinations of factors in total (simple/complex; low/high). Each combination were replicate 5 times (lines nested within combination of factors). Data were obtained by counting alternative male morphs after 1 generation of common garden conditions. 
  Abbreviations used in column names:
Line_id - number of line within combination of factors;
Envir_complexity - environment complexity (simple/complex);
Fighter_start_prop - initial proportion of fighters (low-50%/ high-94%);
Fighters_end - number of fighters after 14 generations of evolution in conditions mentioned above;
Scramblers_end - number of fighters after 14 generations of evolution in conditions mentioned above.
DOI: 10.5061/dryad.k2f04/20
title: PhyML tree of the PDE6 catalytic subunit family with extra bird and reptile sequences

description: Phylogenetic maximum likelihood tree using the WAG amino acid substitution model and 100 bootstrap replicates of the PDE6 catalytic subunit gene family. The tree was made using the PhyML web server (http://www.atgc-montpellier.fr/phyml).
DOI: 10.5061/dryad.k2f04/21
title: Amino acid sequence alignment of the PDE6 catalytic subunit family with additional Birds reptiles

description: Amino acid alignment of the PDE6 catalytic subunit gene family with additional birds and reptiles. The sequences were aligned using ClustalW with standard settings within the Jalview 2.7 program.
DOI: 10.5061/dryad.mq06h/1
title: HeterospecificRiskTransfer

description: Datasheets 1-3: Bat visitations to calling frogs next to calling heterospecific versus calling conspecific neighbors. Datasheets 4-6: Number of flies coming to calling frogs next to calling heterospecific versus calling conspecific neighbors. ealone= D. ebraccatus alone; etungara = D. ebraccatus next to a calling E. pustulosus; econspecific = D. ebraccatus next to another calling D. ebraccatus; talone = E. pustulosus alone.
DOI: 10.5061/dryad.nj3q5/1
title: Physical, chemical and biological variables of 29 Sierra Nevada Lakes

description: These data were collected from lakes in the summer of 2013 in 29 lakes in the Sierra Nevada of California. This includes physical, chemical and biological data such as zooplankton species abundances and body sizes, litter decomposition rates, nutrients and temperature.
DOI: 10.5061/dryad.pj51q/1
title: Field site locations

description: Four-letter location codes (Code), colloquial names (Location), exact GPS coordinates (Latitude and Longitude) and the total number of male individuals (#), regardless of species, measured in each of the 57 populations. In addition, the number of individuals of P. pyralis, P. scintillans and P. marginellus collected at each field site are shown in the last three columns respectively. Total = 675 male individuals. Please note that some field sites are on private land and the corresponding author should be contacted for details concerning access to those sites. Footnotes: * only lab-reared larvae from Unknown Photuris parents captured at this locality were measured. $ habitat was not categorized at this locality. % GPS coordinates available upon request from Charles H. Wharton Conservation Center.
DOI: 10.5061/dryad.pj51q/2
title: Individuals per species

description: The total number of individuals measured for each species: males (M), females (F), and larvae (L). In three individuals, remnant larval light organ emissions were measured in adult males (LM) or females (LF). Total = 786 individuals representing 25 species, including 675 males in 24 species.
DOI: 10.5061/dryad.pj51q/3
title: Spectra data

description: List of specimens for which spectra were measured. Sex/larva column indicates whether specimen was a larval individual (L) or an adult male (M) or female (F). LM and LF indicate that a larval light organ was measured in an adult male or female respectively. Activity time (Act) is for the population from which the specimen was caught and is coded as 0 for start of activity beginning prior to 30 minutes after sunset and 1 for activity beginning more than 30 minutes after sunset. Habitat (Hab) is for the population from which the specimen was caught and is coded as 0 for open, 1 for mixed, and 2 for closed habitats. Also shown are the number of spectra measured per individual (#), and the mean (Peak lambda) and variance (Var_lambda) of the peak emission wavelength for each specimen. Identification number (ID #) corresponds to KSH collection; NC indicates individual not collected. Location code from Table S1. SF = Single Flash.
DOI: 10.5061/dryad.q1q10/2
title: Leaf litter physicochemical properties

description: Leaf litter physicochemical properties of all samples.
DOI: 10.5061/dryad.q1q10/3
title: Bacteria and fungal community dynamics in decomposing litter

description: The data files include (i) biom matrix for bacteria 16S (ii) biom matrix for fungi ITS (iii) representative sequence for bacteria (iv) representative sequence for fungi (v) bioinformatic script for bacteria and (vi) bioinformatic script for fungi
DOI: 10.5061/dryad.sg1hs/1
title: Nabugabo vervet observations

description: Observational data collected in the field at Lake Nabugabo, Uganda of Vervet monkeys (Chlorocebus aethiops) between June 2011 and April 2014. The data is stored created using excel and stored as a .xlsx. The column names are kept intuitive. Further codes used in the file can be found in the "Read Me" file.
DOI: 10.5061/dryad.sn788/1
title: R script for metacommunity model application

description: R script gathering useful functions for landscape construction, metacommunity model application and investigation of coexistence mechanisms.
DOI: 10.5061/dryad.t34qq/1
title: Raw beard reflectance values for temperature-independent experiments_Smith et al. 2016

description: This spreadsheet shows the raw reflectance spectra for the beard (throat) in its lightest and darkest state for each lizard measured during the temperature-independent experiments (social and circadian). Data for Figure S2.
DOI: 10.5061/dryad.t34qq/2
title: Raw Reflectance Values Temperature-Dependent Experiments_Smith et al 2016

description: This spreadsheet shows the raw reflectance spectra for the beard, head, light back spot region, dark back spot region and chest for each lizard at the end of the 15°C and 40°C temperature-dependent experiments. Data for Table 1, Table 2, Figure 2 and Figure 3.
DOI: 10.5061/dryad.t34qq/3
title: Temperature-Dependent photo data_Smith et al. 2016

description: This spreadsheet shows data obtained from linearised and equalised photographs of lizards taken remotely during the temperature-dependent experiments to assess the speed of colour change. Luminance and chroma were calculated from RGB values as described in the paper. Data for Figure S1, Figure S3, Figure S5, Table S2 and Table S3.
DOI: 10.5061/dryad.t34qq/4
title: Temperature-Dependent reflectivity values_Smith et al. 2016

description: This spreadsheet shows reflectivity values calculated from reflectance spectra taken at the end of each temperature-dependent colour change experiment (15C and 40C). Data for Figure 2, Table 1, and Table 2.
DOI: 10.5061/dryad.t34qq/5
title: Temperature-independent reflectivity values_Smith et al. 2016

description: This spreadsheet shows reflectivity values calculated from reflectance spectra taken at the end of each temperature-independent colour change experiment. Data for Table 1 and Figure S2.
DOI: 10.5061/dryad.t34qq/6
title: Biophysical Model Simulation_Smith et al. 2016

description: This spreadsheet shows results from biophysical models used to simulate the effect of differences in skin reflectance on lizard warming rates. Data for Figure 4 and Figure S6.
DOI: 10.5061/dryad.vp825/1
title: IkkaiDataUpload
DOI: 10.5061/dryad.10dk4/1
title: Supplementary Data 2_Gonopodium and SL for generation 10
DOI: 10.5061/dryad.10dk4/2
title: Supplementary Data 3_Female choice trials

description: Excel file of association times of focal females with selection-line males in three-way choice trials.
DOI: 10.5061/dryad.10dk4/5
title: Supplementary Data 1_Gonopodium and SL for generations 1 to 9

description: Excel file of standard length and gonopodium length measurements (cm) for all male Gambusia holbrooki from replicate selection lines over 9 generations of artificial selection on gonopodium length.
DOI: 10.5061/dryad.1cf8p/10
title: Pollination neighborhood survey data

description: Characteristics of the pollination neighborhoods within a 10m radius of focal females. See README.txt for column descriptions.
DOI: 10.5061/dryad.1cf8p/11
title: Focal female data

description: Measurements of focal females, including proportion of flowers that successfully produced seed. See README.txt for column descriptions.
DOI: 10.5061/dryad.1cf8p/12
title: Spatial dispersion of Valeriana edulis plants in four populations

description: GPS coordinates of Valeriana edulis plants in four populations and their sex. See README.txt for column descriptions.
DOI: 10.5061/dryad.1cf8p/13
title: Meta-analysis of montane plant elevation range shifts in response to climate change

description: Rates of elevation range shift in montane plants due to climate change collected from the literature. See README.txt for column descriptions.
DOI: 10.5061/dryad.1cf8p/4
title: Soil moisture across the elevation range of Valeriana edulis

description: Climate station data from the Rocky Mountain Biological Laboratory to test for effect of elevation on soil moisture. See README.txt for column descriptions.
DOI: 10.5061/dryad.1cf8p/5
title: Operational sex ratios of Valeriana edulis populations

description: Operational sex ratios across the elevation range of Valeriana edulis from 1978 and 2011.  See README.txt for column descriptions.
DOI: 10.5061/dryad.1cf8p/6
title: Sex- and size-specific rates of growth and survival in Valeriana edulis

description: Annual rates of sex- and size-specific growth and survival from tagged plants at four populations (1978-1981). See README.txt for column descriptions.
DOI: 10.5061/dryad.1cf8p/7
title: Integrated water use efficiency by sex in four population of Valeriana edulis

description: Carbon isotope ratios of Valeriana edulis leaf samples used to test for sex differences in integrated water use efficiency. See README.txt for column descriptions.
DOI: 10.5061/dryad.1cf8p/8
title: Dispersal of pollen analogue by Valeriana edulis pollinators

description: Pollen analogue (fluorescent dye) transfer by Valeriana edulis pollinators from dyed males to surrounding females. See README.txt for column descriptions.
DOI: 10.5061/dryad.1cf8p/9
title: Flower number calibration dataset

description: Calibration dataset to measure and correct for individual observer effects on estimated numbers of flowers. See README.txt for column descriptions.
DOI: 10.5061/dryad.326r8/74
title: Assembled unitigs for Regalecus glesne
DOI: 10.5061/dryad.326r8/75
title: Assembled scaffolds for Lampris guttatus
DOI: 10.5061/dryad.326r8/76
title: Assembled unitigs for Lampris guttatus
DOI: 10.5061/dryad.326r8/77
title: Assembled scaffolds for Guentherus altivela
DOI: 10.5061/dryad.326r8/78
title: Assembled unitigs for Guentherus altivela
DOI: 10.5061/dryad.326r8/79
title: Assembled scaffolds for Antennarius striatus
DOI: 10.5061/dryad.326r8/80
title: Assembled unitigs for Antennarius striatus
DOI: 10.5061/dryad.326r8/81
title: Assembled scaffolds for Osmerus eperlanus
DOI: 10.5061/dryad.326r8/82
title: Assembled unitigs for Osmerus eperlanus
DOI: 10.5061/dryad.3c56m/2
title: Experiment 2 Data
DOI: 10.5061/dryad.3p27r/1
title: FAA Flights Spatio-Temporal Network

description: A spatio-temporal network of US domestic flights. This is a spatially embedded time-varying public transport network. The network represents actual flights among 299 US airports over 10 days.
DOI: 10.5061/dryad.3p27r/2
title: Paris Metro Spatio-Temporal Network

description: A spatio-temporal network of the Paris Metro. This is a spatially embedded time-varying public transport network. The network represents timetabled Metro journeys for two days.
DOI: 10.5061/dryad.3p27r/3
title: New York Subway Spatio-Temporal Network

description: A spatio-temporal network of the New York Subway. This is a spatially embedded time-varying public transport network. The network represents timetabled subway journeys for two days.
DOI: 10.5061/dryad.5f71g/1
title: PLOSONEcomplete data set. (TPLO alignment jig-saw guide)

description: Raw data collected for two groups of clinically performed TPLOs (a crescent osteotomy of the proximal tibia designed to alter the craniotibial shear force as a result of a cranial cruciate deficient knee).  Group 1 (2005-2007): freehand osteotomies with jig only; Group 2 (2013-2015): freehand osteotomies with jig only.  Group 1 follows recommendation at that time to place proximal jig pin through center of medial collateral ligament (MCL). Group 2 follows the later recommendation to place the jig pin behind the MCL. The objective of the study is to determine if a saw guide attached to the jig can match the positions of the osteotomy performed by experienced surgeons, and also is it can replicate the ideal osteotomy location. The data file are all measurements obtained from these clinical cases that compares guide-to-osteotomy fit and the appropriateness of the osteotomy based upon current published guidelines. All methods are described in the manuscript.
DOI: 10.5061/dryad.90f03/1
title: Seed toughness data and code

description: This zip file contains the dataset as a .csv files and an R script for statistical analyses.
DOI: 10.5061/dryad.93ft0/1
title: Dataset_1_AnnualHomeRanges

description: Dataset used for analysis of lynx annual home range size as detailed in the Methods section of the paper. Variables explained in the README file.
DOI: 10.5061/dryad.93ft0/2
title: Dataset_2_MatingSeasonHomeRanges

description: Data used for analysis of lynx mating and non-mating season home range size as detailed in the Methods section in the paper. Variables are explained in the ReadMe file.
DOI: 10.5061/dryad.93ft0/3
title: Dataset_3_FemaleSeasonalHomeRanges

description: Data used for analysis of female lynx seasonal home range size as detailed in the Methods section in the paper. Variables are explained in the ReadMe file.
DOI: 10.5061/dryad.b4vg0/11
title: Figure S3 data
DOI: 10.5061/dryad.b4vg0/12
title: Figure S4 data

description: Ingoing links probabilities of each cluster for each type of interaction (3 matrices 14x14)
DOI: 10.5061/dryad.b4vg0/13
title: Figure S5 data

description: Outgoing links probabilities of each cluster for each type of interaction (3 matrices 14x14)
DOI: 10.5061/dryad.b4vg0/15
title: Figure S7 data

description: Each line displays the biomass after the extinction of each of the 14 species. First line is the Chilean web, next lines are the 500 random networks.
DOI: 10.5061/dryad.b4vg0/16
title: Figure S8 data
DOI: 10.5061/dryad.b4vg0/17
title: Figures S9-10 data

description: Random network keeping the same sequence of in and out degrees as those of the Chilean web.
DOI: 10.5061/dryad.bp683/1
title: Bias file for cultivated location of E. cardamomum
DOI: 10.5061/dryad.bp683/4
title: Bias file for Indrella ampulla
DOI: 10.5061/dryad.bp683/5
title: Distribution records of Indrella ampulla
DOI: 10.5061/dryad.bp683/6
title: Wild records of E. cardamomum
DOI: 10.5061/dryad.bp683/7
title: Cultivation records of E. cardamomum
DOI: 10.5061/dryad.ch720/11
title: 3pop_analysis

description: Compressed folder contains all files for the 3-population analyses using all replicated genotypes from the three local tree populations sampled nearest to each plantation location. Within the directory, individual files contain data for each garden (AZ, AB, or UT) in each year (2010 or 2011) for each trait (bud flush, bud set, or height and diameter).
DOI: 10.5061/dryad.ch720/4
title: 9pop_analysis_and_GxE_and_GxEplusClimTRD

description: Compressed folder contains all files for the 9-population analyses using a single replicate of eachgenotypes from all nine tree populations sampled. Within the directory, individual files contain data for each garden (AZ, AB, or UT) in each year (2010 or 2011) for each trait (bud flush, bud set, or height and diameter). These are the datasets used for the GxE and climate transfer distance analyses.
DOI: 10.5061/dryad.ct517/1
title: reproductive_status

description: see ReadMe file for description
DOI: 10.5061/dryad.ct517/2
title: treatment

description: see ReadMe file for description
DOI: 10.5061/dryad.ct517/3
title: reaccumulation

description: see ReadMe file for description
DOI: 10.5061/dryad.ct517/4
title: treatment_behavior

description: see ReadMe file for description
DOI: 10.5061/dryad.d9v45/1
title: BrdU-labeling index after a 24 h pulse

description: This text file contains the number of BrdU labeled cells and DAPI labeled cells counted (for host cells and symbiont) after a 24 h BrdU pulse for the 4 developmental stages (3 replicates per life stage) in the different tissues. Labeling index is calculated as a percentage.
DOI: 10.5061/dryad.d9v45/2
title: BrdUChase

description: This file contains the number of BrdU and DAPI labelled cells (coral cells and symbionts) obtained after a 24h BrdU pulse in the primary polyp stage and 48 h and 64 h chase in normal seawater in the different tissues. Labeling index is calculated as a percentage.
DOI: 10.5061/dryad.d9v45/3
title: BrdUSignalIntensity

description: This file contains the signal intensity of the BrdU-labeled nuclei throught the chase. Signal intensity was measured in nuclei in the different tissues at the beginning of the chase (PrimaryPolyp) and at 48h and 64h, background corrected and normalized with DAPI. It is presented as a ratio.
DOI: 10.5061/dryad.d9v45/4
title: Apoptosis

description: This text file contains the number of TUNEL-positive cells and DAPI labeled cells counted (for host cells and symbionts) after a 24 h BrdU pulse for the 4 developmental stages (3 replicates per life stage) in the different tissues. Labeling index is calculated as a percentage.
DOI: 10.5061/dryad.f2d1q/1
title: SNP genotypes and sample information for 144 cattle from various primitive European cattle breeds

description: This file contains the information for 777,962 markers genotyped in 143 samples using the Illumina BovineHD BeadChip. The vcf file contains the aurochs genotypes, which corresponds to SNP positions in Illumina BovineHD Beadchip.
DOI: 10.5061/dryad.k72dj/1
title: Phytopthora prescreening seed scores

description: This file contains prescreening data of Zostera marina seeds which were scored for infection (total, P. gemini and Halophytophthora sp. Zostera separately) and germination right after collection of the seeds in the field, prior to the experiment.
DOI: 10.5061/dryad.k72dj/2
title: Phytopthora experiment seed scores

description: This file contains experimental data of Zostera marina seeds which were scored for infection (total, P. gemini and Halophytophthora sp. Zostera separately) and germination after the 110 days incubation experiment. This file contains both individual seed data and data per experimental unit.
DOI: 10.5061/dryad.k72dj/3
title: Phytophthora experiment porewater sulfide concentrations

description: This file contains porewater sulfide concentrations of each experimental unit, measured several days before the termination of the experiment.
DOI: 10.5061/dryad.mc7c1/1
title: Snowmould_Resistant_genotype_Trinity_transcriptome

description: Snow mould resistant genotype of Lolium perenne denovo assembly by Trinity program
DOI: 10.5061/dryad.mc7c1/2
title: Snowmould_Susceptible_genotype_Trinity_transcriptome

description: Snow mould susceptible genotype of Lolium perenne de novo assembly generated by Trinity program
DOI: 10.5061/dryad.mc7c1/3
title: EST_candidategenes_snowmould

description: Sequences of potential candidate genes for snow mould resistance detected in this study
DOI: 10.5061/dryad.mc7c1/4
title: significant_GO_Terms_fisherstest

description: Sequences of the genes under significant gene ontology (GO) terms which are over represented in snow mould resistant (R) genotype.
DOI: 10.5061/dryad.10dk4/3
title: Supplementary Data 4_Burst swimming performance

description: Excel file of burst-swimming performance measures for male and female selection-line fish: total distance, mean and maximum velocity and maximum acceleration in the first 38 millisec of a startle response trial.
DOI: 10.5061/dryad.10dk4/4
title: Supplementary Data 5_Male reproductive success

description: Excel file of number of offspring sired by selection line males in competitive paternity assays.
DOI: 10.5061/dryad.10dk4/6
title: Supps  6 to 13 for body shape

description: .csv and .tps files and .R code for geometric morphometric analyses of male and female body shape differences among selection lines.
DOI: 10.5061/dryad.10dk4/7
title: Supp 14 to 17 for gono

description: .csv and .tps files and .R code for geometric morphometric analyses of gonopodium shape differences among selection lines.
DOI: 10.5061/dryad.10dk4/8
title: Supplementary Data 18_Within line fecundity

description: Excel file of number of offspring produced over two clutches by within-line pairs of generation 9 fish.
DOI: 10.5061/dryad.10dk4/9
title: RealisedHeritabilityData

description: Excel file used to calculate Response to selection & Selection differentials for relative gonopodium size in Up- and down-selected males. For calculation of realized heritabilities.
DOI: 10.5061/dryad.1cf8p/14
title: Focal female locations 2014

description: This .zip archive contains a shapefile (including .shp, .shx, .dbf, and .prj components) that describes the locations of focal females used in 2014 in the study of the effect of neighborhood operational sex ratio on seed set rates in Valeriana edulis.
DOI: 10.5061/dryad.1cf8p/15
title: Focal female locations 2015

description: This .zip archive contains a shapefile (including .shp, .shx, .dbf, and .prj components) that describes the locations of focal females used in 2015 in the study of the effect of neighborhood operational sex ratio on seed set rates in Valeriana edulis.
DOI: 10.5061/dryad.1cf8p/16
title: Valeriana edulis spatial dispersion plants

description: This .zip archive contains a shapefile (including .shp, .shx, .dbf, and .prj components) that describes the locations of all Valeriana edulis plants in a representative 200m^2 plot at Emerald Lake.
DOI: 10.5061/dryad.1cf8p/17
title: Valeriana edulis spatial dispersion plot

description: This .zip archive contains a shapefile (including .shp, .shx, .dbf, and .prj components) that describes the boundary of a representative plot of Valeriana edulis plants growing at Emerald Lake.
DOI: 10.5061/dryad.1cf8p/18
title: Species range shifts in response to climate change

description: Data for meta-analysis of montane plant species range shifts in response to climate change.
DOI: 10.5061/dryad.1cf8p/19
title: Climate analyses (R script)

description: Analyses of climate change over elevation and time in the study area.
DOI: 10.5061/dryad.1gk0m/1
title: Vallon_etal-Experiment1

description: Original data collected in experiment 1. Self-explanatory table headers are included. See publication for detailed description of variables. Contact authors for further questions.
DOI: 10.5061/dryad.1gk0m/2
title: Vallon_etal-Experiment2

description: Original data collected in experiment 2. Self-explanatory table headers are included. See publication for detailed description of variables. Contact authors for further questions.