cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.9s4mw6mcq
title: Fatal and non-fatal events within 14 days after early, intensive mobilization post stroke

description: Objective: We examined fatal and non-fatal Serious Adverse Events (SAEs)
 at 14 days within AVERT. Method: A prospective, parallel group, assessor
 blinded, randomized international clinical trial comparing very early
 intensive mobilization training (VEM) with usual care (UC); with follow up
 to 3 months. Included: Patients with ischaemic and haemorrhagic stroke
 within 24 hours of onset and physiological parameters within set limits.
 Treatment with thrombolytics allowed. Excluded: Patients with severe
 premorbid disability and/or comorbidities. Interventions continued for 14
 days or hospital discharge if less. The primary early safety outcome was
 fatal SAEs within 14 days. Secondary outcomes were non-fatal SAEs
 classified as neurological, immobility-related, and other. Mortality
 influences were assessed using binary logistic regression adjusted for
 baseline stroke severity (NIHSS) and age. Results: 2104 participants were
 randomized to VEM (n=1054) or UC (n=1050) with a median age of 72 years
 (IQR 63-80) and NIHSS 7 (IQR 4-12). By 14 days, 48 had died in VEM, 32 in
 UC, adjusted Odds Ratio of 1.76 (95% CI 1.06-2.92, P=.029). Stroke
 progression was more common in VEM. Exploratory subgroup analyses showed
 higher odds of death in those; &gt;80 years, and with intracerebral
 haemorrhage, but there was no significant treatment by subgroup
 interaction. No difference in non-fatal SAEs found. Conclusions: While the
 overall case fatality at 14 days post-stroke was only 3.8%, age and
 severity adjusted mortality was increased with high dose, intensive
 training compared to usual care. Stroke progression was more common in
 VEM. Data suggests that older people and those with intracerebral
 haemorrhage are at higher risk. Classification of Evidence: This study
 provides Class I evidence that very early mobilization increases mortality
 at 14 days post stroke.
description: <b>e-Figure 1. Individual profiles of those who died within
 14 days of stroke. </b> Each box represents one
 participant (age; baseline NIHSS; stroke type: Ischemic [ISC], Haemorrhage
 [H] are presented in the grey bar at the top), Yellow highlight indicates
 death from stroke event (stroke progression or recurrent stroke). Vertical
 coloured bars above the grey line=daily functional level; Red=Level 1:
 fully dependent, unable to sit on edge of bed without assistance of 1-2
 people; Orange=Level 2: can sit on edge of bed with assistance or
 supervision, able to stand with assistance; Blue=Level 3: can walk with
 moderate to maximum assistance; Level 4=able to walk with minimal / no
 assistance (note that no level 4 participants died within 14 days of
 stroke onset). Y axis=Daily dose (minutes) out of bed mobilization from
 physiotherapist; daily count (frequency) of sessions with physiotherapist
 (purple circle), and nurse (green circle). Day of serious adverse event
 (SAE, red hashed line); day of death (black line). Not mobilized VEM=9,
 UC=10. X axis=Days post stroke.
DOI: 10.5061/dryad.gtht76hhq
title: Asynchrony among species and functional groups and temporal stability under perturbations: Patterns and consequences

description: 1. A number of theoretical and empirical studies have demonstrated effects
 of perturbations on ecosystem stability. Compensatory dynamics among
 taxonomic units have been proposed as a major mechanism regulating the
 temporal stability of biomass production (hereafter “temporal stability”).
 However, most studies have focused on the effects of species asynchrony on
 temporal stability in response to perturbations, and few studies examined
 how compensatory changes among functional groups affected temporal
 stability. 2. Here, we conducted a 4-year functional group removal
 experiment and a 4-year experimental warming and nitrogen addition
 experiment in an alpine meadow of Qinghai-Tibetan Plateau to investigate
 the effects of perturbations (functional group removal, experimental
 warming and nitrogen addition) on temporal stability and the potential
 mechanisms. 3. In both experiments, temporal stability was positively
 related to both species and functional group asynchrony. However, species
 asynchrony and functional group asynchrony responded differently to
 different types of perturbations. In the removal experiment,
 although asynchrony among both species and functional groups decreased as
 more functional groups were removed, structural equation modelling showed
 that removal of different functional groups could affect temporal
 stability through altering either species or functional group asynchrony.
 Warming suppressed temporal stability through decreasing asynchrony among
 species, while nitrogen addition reduced temporal stability mainly through
 decreasing functional group asynchrony. 4. Synthesis. Our findings
 demonstrate the importance of considering compensatory dynamics at
 different taxonomic levels for predicting temporal stability under
 anthropogenic perturbations in alpine meadows, and throw light on the
 importance of protecting both species and functional group richness to
 maintain temporal stability in the context of global change.
description: we conducted a 4-year functional group removal experiment and a
 4-year experimental warming and nitrogen addition experiment in an alpine
 meadow of Qinghai-Tibetan Plateau to investigate the effects of
 perturbations (functional group removal, experimental warming and nitrogen
 addition) on temporal stability and the potential mechanisms.
DOI: 10.15468/dl.4kshde
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-98.44162 19.1825,-98.45493 19.15076,-98.42575 19.1482,-98.408 19.17443,-98.44162 19.1825))",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 41 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002372-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.gqnk98sjk
title: Data from: A likelihood approach for uncovering selective sweep signatures from haplotype data

description: Selective sweeps are frequent and varied signatures in the genomes of
 natural populations, and detecting them is consequently important in
 understanding mechanisms of adaptation by natural selection. Following a
 selective sweep, haplotypic diversity surrounding the site under selection
 decreases, and this deviation from the background pattern of variation can
 be applied to identify sweeps. Multiple methods exist to locate selective
 sweeps in the genome from haplotype data, but none leverage the power of a
 model-based approach to make their inference. Here, we propose a
 likelihood ratio test statistic T to probe whole genome
 polymorphism datasets for selective sweep signatures. Our framework uses a
 simple but powerful model of haplotype frequency spectrum distortion to
 find sweeps and additionally make an inference on the number of presently
 sweeping haplotypes in a population. We found that
 the T statistic is suitable for detecting both hard and
 soft sweeps across a variety of demographic models, selection strengths,
 and ages of the beneficial allele. Accordingly, we applied
 the T statistic to variant calls from European and
 sub-Saharan African human populations, yielding primarily
 literature-supported candidates, including LCT, RSPH3,
 and ZNF211 in CEU, SYT1, RGS18,
 and NNT in YRI, and HLA genes in both
 populations. We also searched for sweep signatures in Drosophila
 melanogaster, finding expected candidates at Ace, Uhg1,
 and Pimet. Finally, we provide open-source software to compute
 the T statistic and the inferred number of presently
 sweeping haplotypes from whole-genome data.
description: All scripts are self-made, and were applied to generate the
 resulting scans. The releases of selscan and SweepFinder software that we
 used for analysis are also included, as are the simulation software SLiM
 (2.6) and ms.
description: Contained within this compressed folder are all of the scripts
 and tools used to generate conclusions presented in "A likelihood
 approach for uncovering selective sweep signatures from haplotype
 data" (Harris and DeGiorgio, 2020, Mol. Biol. Evol.). Please contact
 the author for more information.
DOI: 10.5061/dryad.7sqv9s4q3
title: The target of selection matters: an established resistance – development-time negative genetic trade-off is not found when selecting on development time.

description: Trade-offs are fundamental to evolutionary outcomes and play a central
 role in eco-evolutionary theory. They are often examined by experimentally
 selecting on one life-history trait and looking for negative correlations
 in other traits. For example, populations of the moth Plodia
 interpunctella selected to resist viral infection show a life-history cost
 with longer development times. However, we rarely examine whether the
 detection of such negative genetic correlations depends on the trait on
 which we select. Here we examine a well-characterised negative genotypic
 trade-off between development time and resistance to viral infection in
 the moth Plodia interpunctella and test whether selection on a phenotype
 known to be a cost of resistance (longer development time) leads to the
 predicted correlated increase in resistance. If there is tight pleiotropic
 relationship between genes that determine development time and resistance
 underpinning this trade-off, we might expect increased resistance when we
 select on longer development time. However, we show that selecting for
 longer development time in this system selects for reduced resistance when
 compared to selection for shorter development time. This shows how
 phenotypes typically characterised by a trade-off can deviate from that
 trade-off relationship, and suggests little genetic linkage between the
 genes governing viral resistance and those that determine response to
 selection on the key life-history trait. Our results are important for
 both selection strategies in applied biological systems and for
 evolutionary modelling of host-parasite interactions.
description: Please see main associated manuscript for full and detailed
 description of data collections and processes.
description: Values should be complete and easily imported with no missing
 values.
DOI: 10.5061/dryad.v6wwpzgsb
title: Using different body size measures can lead to different conclusions about the effects of climate change

description: Aim: Declining animal body size has been proposed as a general response to
 increasing global temperatures that should be observed across a broad
 biogeographical scale. However, published studies have shown large
 variation in both the magnitude and direction of body size trends. We aim
 to investigate how the way body size is measured (body mass, structural
 size, body condition) may contribute to differences in body size trends
 between studies. Location: Semi-arid Australia. Taxon: White-plumed
 honeyeater (Ptilotula penicillatus). Methods: We studied two separate
 populations of P. penicillatus over 30 years to investigate the
 associations between weather and body size. We first investigated how body
 mass has been affected by weather conditions at each site and then
 determined how these same local weather conditions affected the
 constituent components of body mass (structural size and body condition).
 Results: The magnitude and direction of weather effects differed with the
 measure of body size used. Average structural size (wing length) increased
 with increasing temperatures while average body condition decreased. As
 body mass is a composite of structural size and body condition, the
 magnitude and direction of body mass trends was affected by trends in
 these two other traits. For example, differences in temperature effects on
 structural size between our two sites led to clear differences in body
 mass trends. Main Conclusions: Trends in body size will be strongly
 affected by the choice of body size measure used in analyses. Change in
 body mass can be particularly difficult to interpret as it will be a
 composite of changes in both structural size and body condition. Our
 results indicate that it is difficult to compare studies using different
 measures of body size. Using consistent measures of body size will be
 important to better understand the general effects of climate change on
 body size.
DOI: 10.5061/dryad.s7h44j149
title: Host-plant choices determined by reproductive interference between closely related butterflies

description: A number of empirical studies have concluded that reproductive
 interference, RI, contributes to parapatric species distributions or
 sexual exclusion. However, the possibility that divergent host-plant use
 in phytophagous insects is due to sexual exclusion has seldom been
 considered. Here we present evidence that RI is responsible for different
 host-plant use by two Pierid butterfly species, Pieris napi and P. melete
 . When a novel host species was introduced about 50 years ago, two Pierid
 butterfly species at first used both the ancestral host species and the
 novel one. Subsequently, P. napi shifted to use only the novel host, while
 P. melete shifted to specialize on the ancestral host. To explain these
 patterns, we investigated whether the two host species differ in
 suitability for larval growth and survival. Additionally, we tested
 whether RI occurred between the two species using large outdoor field
 cages. Courtship of females by conspecific and heterospecific males
 reduces the number of eggs laid by approximately half. However, RI is
 asymmetric and would generate selection on P. melete females to evolve to
 avoid the more suitable host species preferred by P. napi . Thus, our
 study suggests that sexual exclusion can explain the shift in host use by
 these two butterfly species.
DOI: 10.5061/dryad.612jm6415
title: Large losses of ammonium-nitrogen from a rice ecosystem under elevated CO2

description: Inputs of nitrogen into terrestrial ecosystems, mainly via the use of
 ammonium-based fertilizers in agroecosystems, are enormous, but its fate
 under elevated atmospheric carbon dioxide (CO2) is not well understood. We
 have taken advantage of a 15-year free air CO2 enrichment study to
 investigate the influence of elevated CO2 on the transformation of
 ammonium-nitrogen in a rice ecosystem in which ammonium is usually assumed
 to be stable under anaerobic conditions. We demonstrate that elevated CO2
 causes substantial losses of ammonium-nitrogen that result from anaerobic
 oxidation of ammonium coupled to reduction of iron. We identify a new,
 autotrophic member of the bacterial order Burkholderiales that may use
 soil CO2 as a carbon source to couple anaerobic ammonium oxidation and
 iron reduction. These findings offer insight into the coupled cycles of
 nitrogen and iron in terrestrial ecosystems and raise questions about the
 loss of ammonium-nitrogen from arable soils under future climate-change
 scenarios.
DOI: 10.5061/dryad.9p8cz8wd0
title: Low-dose alemtuzumab induction in a tailored immunosuppression protocol for sensitized kidney transplant recipients

description: Background: Induction therapy is crucial in kidney transplantation and
 constitutes an important cornerstone for long-term allograft survival.
 Alemtuzumab is a depleting CD52-specific antibody with T and B cell
 activity, leading to prolonged lymphocyte depletion for up to 12 months,
 with profound immunosuppression and an associated risk of serious
 infections. Current concepts aim to optimize dosing strategies to reduce
 side effects. Here we present data from an ongoing centre protocol
 consisting of low-dose alemtuzumab induction and tailored
 immunosuppression in sensitized patients undergoing kidney
 transplantation. Methods: 10-year results of the protocol were analysed.
 Low-dose alemtuzumab induction consisted of a single dose of 20mg
 intraoperatively, followed by tacrolimus and corticosteroids for initial
 immunosuppression, with mycophenolate mofetil suspended until a total
 lymphocyte count &gt;5% or 200/µl was reached. Results: Between
 01/2007 and 04/2017, 46 patients were treated in accordance with the
 protocol in 48 kidney transplantations. Median PRAmax was 43 [22-76; IQR]
 %; all patients had negative CDC-crossmatch prior to transplantation.
 Low-dose alemtuzumab was well tolerated. Median time to TLC recovery was
 77 [62-127; IQR] d. Within a median follow-up of 3.3 [1.5-5.6; IQR] years,
 12 (25%) patients developed BPAR, 10 of which were antibody-mediated (3
 acute, 7 chronic ABMR). Death-censored 5-year allograft survival was
 79.2%, with an excellent allograft function at the end of follow-up. There
 was no increased rate of infections, in particular viral infections.
 Conclusions: Our protocol, comprising low-dose alemtuzumab induction,
 initial suspension of mycophenolate mofetil and triple maintenance
 immunosuppression, provides excellent patient and allograft outcome in
 sensitized renal allograft recipients.
DOI: 10.15468/dl.vbbjdd
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthroclianthus deplanchei",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 56 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002373-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.573n5tb4k
title: Roridula gorgonias, Clethra arborea: assemblies and annotation

description: Carnivorous plants are distributed across the tree of life, and plant
 carnivory has evolved at least six times independently in five major plant
 lineages. However, sequenced and annotated nuclear genomes of only four of
 these remarkable plants are currently available, three of which are within
 the Lamiales. More data is needed to study the evolution and molecular
 adaptations involving plant carnivory, and to determine unique and shared
 adaptations to carnivory in different lineages. We have sequenced and
 structurally annotated the nuclear genome of the carnivorous Roridula
 gorgonias and that of its non-carnivorous relative, Madeira's
 lily-of-the-valley-tree, Clethra arborea, both within the Ericales. Our
 assemblies show high BUSCO scores of 84.2% (R. gorgonias) and 89.5% (C.
 arborea), the respective genome assemblies have total lengths of 284 Mbp
 and 511 Mbp. The R. gorgonias genome adds an important resource to study
 the evolutionary genetics of plant carnivory across angiosperm lineages.
 Together with C. arborea, we have added two more nuclear genomes and their
 predicted protein-coding genes to the list of genomes within the Ericales.
 They can now be used for future phylogenomic studies that focus on
 functional and systematic aspects of plants within this group.  
  
description: Genome assemblies and predicted proteins (cDNA, peptide, gff) for
 R. gorgonias and C. arborea:<br>   
 R_gorgonias.assembly.fasta<br>   
 R_gorgonias.transcripts.fasta<br>   
 R_gorgonias.proteins.fasta<br>    R_gorgonias.gff<br>   
 C_arborea.assembly.fasta<br>   
 C_arborea.transcripts.fasta<br>   
 C_arborea.proteins.fasta<br>    C_arborea.gff<br>  
  <br>
DOI: 10.5061/dryad.bcc2fqz92
title: Different intensity exercise and verbal spatial working memory data

description: Background: The inconsistent results of the studies on whether
 acute exercise can improve working memory and the small effect sizes of
 meta-analysis indicate that there may be some moderating variables
 affecting the intensity of the relationship between acute exercise and
 working memory. This research examined the effects of different
 intensity acute exercise on the two types of working memory. Methods:
 Seventy-eight low active college students aged 18 to 22 years were
 selected and randomly assigned to four groups. The low-intensity group
 (n=19), moderate-intensity group (n=19) and high-intensity group (n=19)
 completed 30-min cycle ergometer exercise bouts separately at the
 intensity of 40%, 60% and 80% of Vo2max, while the control group (n=21)
 read for 30-min. The delayed match-to-sample test was used to test verbal
 and spatial working memory after the intervention. Results: On response
 time and accuracy, the main effects of acute exercise intensity and
 working memory type were significant (p&lt;0.05), and the interaction
 effect of acute exercise intensity and working memory type was significant
 (p&lt;0.05). Conclusions: Acute exercise can improve verbal and
 spatial working memory, while the moderate intensity of acute
 exercise has the best effect. Compared with verbal working memory, the
 effect of acute exercise on spatial working memory is greater.
DOI: 10.5281/zenodo.18395345
title: COMPARATIVE PHILOSOPHICAL ANALYSIS OF ETHICS AND JUSTICE IN EASTERN AND WESTERN TRADITIONS

description: Ethics and justice are fundamental concepts in philosophical thought, shaping moral behavior and social order across civilizations. Eastern and Western philosophical traditions have developed distinct yet overlapping approaches to understanding ethical values and justice. This article provides a comparative philosophical analysis of ethics and justice in Eastern and Western traditions, highlighting their conceptual foundations, similarities, and differences. By examining key philosophical ideas from both traditions, the study emphasizes the importance of intercultural dialogue in addressing contemporary moral and social challenges.
DOI: 10.5281/zenodo.18395346
title: COMPARATIVE PHILOSOPHICAL ANALYSIS OF ETHICS AND JUSTICE IN EASTERN AND WESTERN TRADITIONS

description: Ethics and justice are fundamental concepts in philosophical thought, shaping moral behavior and social order across civilizations. Eastern and Western philosophical traditions have developed distinct yet overlapping approaches to understanding ethical values and justice. This article provides a comparative philosophical analysis of ethics and justice in Eastern and Western traditions, highlighting their conceptual foundations, similarities, and differences. By examining key philosophical ideas from both traditions, the study emphasizes the importance of intercultural dialogue in addressing contemporary moral and social challenges.