cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17028/rd.lboro.22659067.v1
title: Supplementary information files for Disconnection in a left-hemispheric temporo-parietal network impairs multiplication fact retrieval

description: Supplementary files for article Disconnection in a left-hemispheric temporo-parietal network impairs multiplication fact retrieval <br> Arithmetic fact retrieval has been suggested to recruit a left-lateralized network comprising perisylvian language areas, parietal areas such as the angular gyrus (AG), and non-neocortical structures such as the hippocampus. However, the underlying white matter connectivity of these areas has not been evaluated systematically so far. Using simple multiplication problems, we evaluated how disconnections in parietal brain areas affected arithmetic fact retrieval following stroke. We derived disconnectivity measures by jointly considering data from n = 73 patients with acute unilateral lesions in either hemisphere and a white-matter tractography atlas (HCP-842) using the Lesion Quantification Toolbox (LQT). Whole-brain voxel-based analysis indicated a left-hemispheric cluster of white matter fibers connecting the AG and superior temporal areas to be associated with a fact retrieval deficit. Subsequent analyses of direct gray-to-gray matter disconnections revealed that disconnections of additional left-hemispheric areas (e.g., between the superior temporal gyrus and parietal areas) were significantly associated with the observed fact retrieval deficit. Results imply that disconnections of parietal areas (i.e., the AG) with language-related areas (i.e., superior and middle temporal gyri) seem specifically detrimental to arithmetic fact retrieval. This suggests that arithmetic fact retrieval recruits a widespread left-hemispheric network and emphasizes the relevance of white matter connectivity for number processing.
DOI: 10.5285/c7ec736c-e1b0-48b5-b9b9-e68aa5adfcc3
title: GPS and Time-Depth Recorder tracking of common and Brunnich's guillemots from five colonies around Iceland, June-July 2019-2021

description: We tracked 94 common and 50 Brunnich's guillemots from five colonies around Iceland (Latrabjarg, Grimsey, Langanes, Skrudur and Papey) during late incubation and chick rearing from June to July 2019. We also tracked 5 common and 3 Brunnich's guillemots from Langanes during chick-rearing in July 2020 (GPS only). We used Pathtrack nanoFix GPS loggers to record locations every 3min and Cefas G5 TDR loggers to record depth every second. The tags recorded the birds' behaviour for a few days (typically 2 to 3). The aim was to investigate the foraging behaviour of the two species and the potential competition between them. Funding was provided by NERC grant NE/R012660/1 (part of the NERC Changing Arctic Ocean programme).
description: We captured birds using a fowling pole with a noose at the end and deployed Pathtrack nanoFix GPS loggers (on the back) and Cefas G5 TDR loggers (on the belly). We then released them and waited a few days (enough for the bird to go on at least one foraging trip) before recapturing them to recover the loggers. We used the Pathtrack Archival GPS logger software to set up the GPS loggers and process the data. Recording rate was set to every 3min. We downloaded and processed the raw data following the software's standard procedure to obtain locations. To improve accessibility, the processed data were converted to .csv files and headings were subsequently added. We used the DST Host software to set up the TDR loggers and download the data. Recording rate was set to every second, Fast log was disabled, 'log wet/dry' was selected, and the rest of the deployment parameters were kept at their default value.
DOI: 10.6084/m9.figshare.21788420.v1
title: A reassessment of industrial growth in interwar Turkey through first-generation sectoral estimates

description: This study presents the first sectorally disaggregated estimates of the industrial output growth for Turkey between World War I and II. These estimates indicate that at the aggregate level the existing official index overestimates the output growth. Secondly, the sectoral disaggregation shows that the industrial growth was balanced, as both textiles and food-processing branches, which comprised most of the value-added, grew significantly. Local industries expanded against the only modest gains in per capita consumption of manufactured goods and incomes. Output growth was positively correlated with higher initial import penetration and nominal protection rates, which implies that trade protectionism helped favorable relative prices induce domestic expansion. On the other hand, both import-competing and domestic-market-oriented sectors significantly expanded, which suggests that import repression and increasing domestic demand drove industrial growth.
DOI: 10.6084/m9.figshare.22658824.v3
title: lnRR data of mnp on nitrogen 20230419

description: Data for "Global analysis of the perturbation effects of metal-based nanoparticles on soil nitrogen cycling". It contains four Excel sheets: three data sheets and one annotation sheet. The data was shown by effect sizes after natural logarithmic transformation.
DOI: 10.5281/zenodo.7775088
title: Leveraging preserved specimens of Nerodia to infer the spatiotemporal dynamics of Ophidiomyces ophidiicola via quantitative polymerase chain reaction

description: <em>Ophidiomyces ophidiicola </em>(<em>Oo</em>) is a fungal pathogen and the causative agent of ophidiomycosis that has affected multiple snake taxa across the United States, Europe, and Asia. Ophidiomycosis<em> </em>has often been referred to as an emerging infectious disease (EID), however its status as an EID has recently come under debate. <em>Oo </em>infections have been confirmed in wild snake populations in Texas; however, it is unknown if the pathogen is novel (i.e., invasive) or endemic to the state. To address this knowledge gap, we conducted surveys for <em>Oo </em>among preserved <em>Nerodia </em>deposited at three university museums in Texas. First, we visually assessed snakes for signs of infection (SOI), and if SOI were present, we sampled the affected area. We then used quantitative polymerase chain reaction to diagnose the presence of <em>Oo </em>DNA on areas with SOI and used these data to evaluate spatiotemporal patterns of <em>Oo</em> prevalence. We also tested for significant spatial clusters of <em>Oo </em>infection using a Bernoulli probability model as implemented in the program SatScan. We found that the proportion of snakes exhibiting SOI was constant over time while the prevalence of <em>Oo </em>DNA among those SOI increased across space and time. Within these data, we detected an incidence pattern consistent with an introduction and then spread. We detected six spatial clusters of <em>Oo </em>infection, although only one was significant. Our results support the hypothesis that <em>Oo </em>was an emerging, novel pathogen to Texas snakes. These data narrow the knowledge gap regarding the history of <em>Oo</em> infections in Texas and establish a historical record of confirmed <em>Oo </em>detections in several counties across the state. Thus, our results will guide future research to those areas with evidence of past <em>Oo</em> infections but lacking confirmation in contemporary hosts.
DOI: 10.5281/zenodo.7775087
title: Leveraging preserved specimens of Nerodia to infer the spatiotemporal dynamics of Ophidiomyces ophidiicola via quantitative polymerase chain reaction

description: <em>Ophidiomyces ophidiicola </em>(<em>Oo</em>) is a fungal pathogen and the causative agent of ophidiomycosis that has affected multiple snake taxa across the United States, Europe, and Asia. Ophidiomycosis<em> </em>has often been referred to as an emerging infectious disease (EID), however its status as an EID has recently come under debate. <em>Oo </em>infections have been confirmed in wild snake populations in Texas; however, it is unknown if the pathogen is novel (i.e., invasive) or endemic to the state. To address this knowledge gap, we conducted surveys for <em>Oo </em>among preserved <em>Nerodia </em>deposited at three university museums in Texas. First, we visually assessed snakes for signs of infection (SOI), and if SOI were present, we sampled the affected area. We then used quantitative polymerase chain reaction to diagnose the presence of <em>Oo </em>DNA on areas with SOI and used these data to evaluate spatiotemporal patterns of <em>Oo</em> prevalence. We also tested for significant spatial clusters of <em>Oo </em>infection using a Bernoulli probability model as implemented in the program SatScan. We found that the proportion of snakes exhibiting SOI was constant over time while the prevalence of <em>Oo </em>DNA among those SOI increased across space and time. Within these data, we detected an incidence pattern consistent with an introduction and then spread. We detected six spatial clusters of <em>Oo </em>infection, although only one was significant. Our results support the hypothesis that <em>Oo </em>was an emerging, novel pathogen to Texas snakes. These data narrow the knowledge gap regarding the history of <em>Oo</em> infections in Texas and establish a historical record of confirmed <em>Oo </em>detections in several counties across the state. Thus, our results will guide future research to those areas with evidence of past <em>Oo</em> infections but lacking confirmation in contemporary hosts.
DOI: 10.5522/04/22362919
title: Raw data for the manuscript: Harmonising protocols to measure Drosophila respiratory function in mitochondrial preparations

description: <strong>Recent advances in fluorespirometry have allowed to measure multiple parameters of mitochondrial function; yet protocols vary widely between research groups, organisms, and tissues, sometimes without adequate justification or with assumptions that are not supported by data. This is particularly clear in </strong><em><strong>Drosophila</strong></em><strong> studies, a common model organism in biological research, with increasingly popularity in mitochondrial research. We first surveyed the literature on </strong><em><strong>Drosophila</strong></em><strong> fluorespirometry to compare and contrast approaches used in the field. Then, we showed that contrary to previous assumptions based on mammalian studies, oxygen diffusion is not limited in the permeabilised thoracic muscle of this species. We further compared the permeabilization and homogenising approaches, showing the former to be more adequate in </strong><em><strong>Drosophila</strong></em><strong>. Finally, we assessed the concentration-dependent effect of various commonly used fluorescent probes on mitochondrial respiration, showing that some probes strongly affect mitochondria and that careful choice of concentration and probe needs to be taken. The objective of this study is to give recommendations and work towards a harmonisation of the protocols for assessing mitochondrial function in fruit flies. This upload contains the raw data supporting these findings.</strong>
DOI: 10.5522/04/22362919.v1
title: Raw data for the manuscript: Harmonising protocols to measure Drosophila respiratory function in mitochondrial preparations

description: <strong>Recent advances in fluorespirometry have allowed to measure multiple parameters of mitochondrial function; yet protocols vary widely between research groups, organisms, and tissues, sometimes without adequate justification or with assumptions that are not supported by data. This is particularly clear in </strong><em><strong>Drosophila</strong></em><strong> studies, a common model organism in biological research, with increasingly popularity in mitochondrial research. We first surveyed the literature on </strong><em><strong>Drosophila</strong></em><strong> fluorespirometry to compare and contrast approaches used in the field. Then, we showed that contrary to previous assumptions based on mammalian studies, oxygen diffusion is not limited in the permeabilised thoracic muscle of this species. We further compared the permeabilization and homogenising approaches, showing the former to be more adequate in </strong><em><strong>Drosophila</strong></em><strong>. Finally, we assessed the concentration-dependent effect of various commonly used fluorescent probes on mitochondrial respiration, showing that some probes strongly affect mitochondria and that careful choice of concentration and probe needs to be taken. The objective of this study is to give recommendations and work towards a harmonisation of the protocols for assessing mitochondrial function in fruit flies. This upload contains the raw data supporting these findings.</strong>
DOI: 10.5517/ccdc.csd.cc2by3v8
title: CCDC 2172940: Experimental Crystal Structure Determination

description: Related Article: Poonam Sikarwar, Puneet Siwach, Neelam Venkata Phani Chandra, Sudhadevi Antharjanam, Aravind Kumar Chandiran|2023|Inorg.Chem.|62|5836|doi:10.1021/acs.inorgchem.3c00571
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2by3w9
title: CCDC 2172941: Experimental Crystal Structure Determination

description: Related Article: Poonam Sikarwar, Puneet Siwach, Neelam Venkata Phani Chandra, Sudhadevi Antharjanam, Aravind Kumar Chandiran|2023|Inorg.Chem.|62|5836|doi:10.1021/acs.inorgchem.3c00571
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2by3xb
title: CCDC 2172942: Experimental Crystal Structure Determination

description: Related Article: Poonam Sikarwar, Puneet Siwach, Neelam Venkata Phani Chandra, Sudhadevi Antharjanam, Aravind Kumar Chandiran|2023|Inorg.Chem.|62|5836|doi:10.1021/acs.inorgchem.3c00571
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cl7lt
title: CCDC 2192276: Experimental Crystal Structure Determination

description: Related Article: Li Xuechen, Wu Shining, Zhang Hongli, Tian Rongwei, Yu Shimo
|2022|U.S.Patents|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cq8w8
title: CCDC 2196160: Experimental Crystal Structure Determination

description: Related Article: Cheng Bi, Yu Wang, Chi He, Phil S. Baran|2023|J.Am.Chem.Soc.|145|7753|doi:10.1021/jacs.3c01991
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d831v
title: CCDC 2212316: Experimental Crystal Structure Determination

description: Related Article: Cheng Bi, Yu Wang, Chi He, Phil S. Baran|2023|J.Am.Chem.Soc.|145|7753|doi:10.1021/jacs.3c01991
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2czlpn
title: CCDC 2204152: Experimental Crystal Structure Determination

description: Related Article: Mei-Yu Xu, Tong-Wei Zhang, Zhong-Mei Xian, Jie Yang, Zeng-Ni Xiang, Ji-Lan Long, Lei Xu, Guang-Ming Liang, Peng Xiong, Xiu-Jian Wang|2023|Cryst.Growth Des.|23|3019|doi:10.1021/acs.cgd.3c00094
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2czlqp
title: CCDC 2204153: Experimental Crystal Structure Determination

description: Related Article: Mei-Yu Xu, Tong-Wei Zhang, Zhong-Mei Xian, Jie Yang, Zeng-Ni Xiang, Ji-Lan Long, Lei Xu, Guang-Ming Liang, Peng Xiong, Xiu-Jian Wang|2023|Cryst.Growth Des.|23|3019|doi:10.1021/acs.cgd.3c00094
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dvvjn
title: CCDC 2230342: Experimental Crystal Structure Determination

description: Related Article: Víctor García-López, Hanane El Mansour El Jastimi, Jana Juráková, Miguel Clemente-León, Eugenio Coronado|2023|Cryst.Growth Des.|23|2730|doi:10.1021/acs.cgd.2c01524
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dvvpt
title: CCDC 2230347: Experimental Crystal Structure Determination

description: Related Article: Víctor García-López, Hanane El Mansour El Jastimi, Jana Juráková, Miguel Clemente-León, Eugenio Coronado|2023|Cryst.Growth Des.|23|2730|doi:10.1021/acs.cgd.2c01524
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dvvrw
title: CCDC 2230349: Experimental Crystal Structure Determination

description: Related Article: Víctor García-López, Hanane El Mansour El Jastimi, Jana Juráková, Miguel Clemente-León, Eugenio Coronado|2023|Cryst.Growth Des.|23|2730|doi:10.1021/acs.cgd.2c01524
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dvvvz
title: CCDC 2230352: Experimental Crystal Structure Determination

description: Related Article: Víctor García-López, Hanane El Mansour El Jastimi, Jana Juráková, Miguel Clemente-León, Eugenio Coronado|2023|Cryst.Growth Des.|23|2730|doi:10.1021/acs.cgd.2c01524
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/5458648
title: Mahanagar Yatayat Dataset
DOI: 10.6084/m9.figshare.22066136
title: NCB-A50345-T_Sequencing and mass spectrum raw data_Chen et al.

description: Sequencing data: Next-generation sequencing data is from the PARPi resistance CRISPR screen describing in this paper, by analyzing the sgRNA abundance of GeCKO v2 CRISPR knockout libraries A and B at the indicated time points in the cells before and after olaparib treatment. Including <strong>library-A-0d</strong> / <strong>library-B-0d</strong> / <strong>library-A-30d</strong> / <strong>library-B-30d and a MD5 file.</strong> <br> Mass spectrum data: For mass spectrometry, on-bead trypsin digestion was performed and liquid chromatography-tandem MS (LC-MS/MS) was carried out on the Thermo Q Exactive Hybrid quadrupole orbitrap mass spectrometer as described in this paper. Including <strong>BioID-NLS-1</strong> / <strong>BioID-NLS-2 /</strong> <strong>BioID-NUMEN / NUMEN-BioID.</strong>
DOI: 10.6084/m9.figshare.22066136.v1
title: NCB-A50345-T_Sequencing and mass spectrum raw data_Chen et al.

description: Sequencing data: Next-generation sequencing data is from the PARPi resistance CRISPR screen describing in this paper, by analyzing the sgRNA abundance of GeCKO v2 CRISPR knockout libraries A and B at the indicated time points in the cells before and after olaparib treatment. Including <strong>library-A-0d</strong> / <strong>library-B-0d</strong> / <strong>library-A-30d</strong> / <strong>library-B-30d and a MD5 file.</strong> <br> Mass spectrum data: For mass spectrometry, on-bead trypsin digestion was performed and liquid chromatography-tandem MS (LC-MS/MS) was carried out on the Thermo Q Exactive Hybrid quadrupole orbitrap mass spectrometer as described in this paper. Including <strong>BioID-NLS-1</strong> / <strong>BioID-NLS-2 /</strong> <strong>BioID-NUMEN / NUMEN-BioID.</strong>
DOI: 10.6084/m9.figshare.22659091
title: Data_FFioroni_et_al_2023_Berberis

description: In this study we evaluated how arbuscular mycorrhiza (AM) and dark septate endophyte (DSE) colonization of <em>Berberis microphylla</em>, a native shrub, was affected by the addition of inorganic nitrogen, phosphorus and potassium. We used a factorial experimental design (8 fertilization treatments applied to 31.5 x 45m plots) in Río Negro (Argentina).
DOI: 10.6084/m9.figshare.22659091.v1
title: Data_FFioroni_et_al_2023_Berberis

description: In this study we evaluated how arbuscular mycorrhiza (AM) and dark septate endophyte (DSE) colonization of <em>Berberis microphylla</em>, a native shrub, was affected by the addition of inorganic nitrogen, phosphorus and potassium. We used a factorial experimental design (8 fertilization treatments applied to 31.5 x 45m plots) in Río Negro (Argentina).
DOI: 10.6084/m9.figshare.22659100
title: DFT_computational_studies_Chapter_4.zip

description: DFT modelling of the isodesmic ring opening for carbonate and (thio)carbonate monomers. As well as the initiation and first propagation step for the ring opening polymerisation of unsaturated nad saturated cyclic xanthhate monomers.
DOI: 10.6084/m9.figshare.22659100.v1
title: DFT_computational_studies_Chapter_4.zip

description: DFT modelling of the isodesmic ring opening for carbonate and (thio)carbonate monomers. As well as the initiation and first propagation step for the ring opening polymerisation of unsaturated nad saturated cyclic xanthhate monomers.