cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14004605
title: Legacy effects of four decades of insecticide applications on contemporary benthic macroinvertebrates in eastern Canadian rivers

description: These files support the manuscript "Legacy effects of four decades of insecticide applications on contemporary riverine benthic macroinvertebrates," which has been published in Environmental Pollution (https://doi.org/10.1016/j.envpol.2025.126397). This manuscript evaluates the relative importance of historical insecticide applications and modern environmental variables in explaining benthic macroinvertebrate assemblages at 274 sites across the province of New Brunswick, Canada.

No new data was generated for the work described in this manuscript. Historical insecticide application data for the province of New Brunswick were taken from Heartz et al. 2023 (https://doi.org/10.1002/ecy.4068), and benthic macroinvertebrate data were downloaded from the publicly available CABIN database (https://open.canada.ca/data, record ID 13564ca4-e330-40a5-9521-bfb1be767147). The authors cannot make their compiled data set publicly available because the subset of CABIN data used for this analysis includes privately maintained data that are only available upon request from respective stakeholders. Please contact the corresponding author for guidance on obtaining these data directly from CABIN. 

The attached files include



analysis_R_scripts: All R codes required to reproduce our analysis.



01_cabin_prep_BMI_data cleans the CABIN benthic macroinvertebrate data for analysis.

02_cabin_prep_env_data cleans the CABIN site-level environmental data for analysis.

03_pesticide_etl_calculation calculates the estimated toxicity load (ETL) in each reach and catchment we studied. 

04_ pesticide_apps_per_year calculates the number of years each insecticide was applied in each reach and catchment we studied.

05_site_year_selection_script subsets the CABIN data to include only one observation per site and calculates univariate indices (e.g., %EPT) for each site.

06_data_merge_for_analysis compiles all data (insecticide applications and environmental variables at the reach and catchment scales + CABIN macroinvertebrate and site-level environmental data)

07_univariate_analysis performs multiple regression analysis with the merged data.

08_mulivariate_analysis_familydata performs PCA and RDA analysis with the merged data.

09_misc_figures renders figures used in the manuscript text.

10_site_year_selection_100x loops over script #5 100x to confirm that our results were robust to data subsetting and imputation.

11_data_merge_100x loops over script #6 100x to confirm that our results were robust to data subsetting and imputation.

12_univariate_analysis_100x loops over script #7 100x to confirm that our results were robust to data subsetting and imputation.
DOI: 10.15468/dl.cdhekt
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Lepidoblepharis miyatai"
 ]
}

 The dataset includes 81 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023886-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vaustr
title: Occurrence Download

description: A dataset containing 13294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Vireo altiloquus)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 13294 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023883-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cpf2pr
title: Occurrence Download

description: A dataset containing 5477232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 9959.0-1000000.0",
 "Geometry POLYGON((-127.42958 19.56913,-65.72926 19.56913,-65.72926 49.03794,-127.42958 49.03794,-127.42958 19.56913))"
 ]
}

 The dataset includes 5477232 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023866-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tuuka6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia nilotica",
 "Country is Antigua and Barbuda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023888-250717081556266/datasets/export for details.
DOI: 10.15468/dl.4cuv85
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia nilotica",
 "Country is Sri Lanka",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023889-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hfeg7f
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyptis pectinata",
 "Country is Cook Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023890-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4tseby
title: Occurrence Download

description: A dataset containing 3497 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viola praemorsa"
 ]
}

 The dataset includes 3497 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023887-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dejrxm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyptis pectinata",
 "Country is Niue",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023892-250717081556266/datasets/export for details.
DOI: 10.15468/dl.hbfk37
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyptis pectinata",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023891-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g58gzf
title: Occurrence Download

description: A dataset containing 2235 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Notropis maculatus"
 ]
}

 The dataset includes 2235 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023893-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a5sypb
title: Occurrence Download

description: A dataset containing 4585 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ampelodesmos mauritanicus"
 ]
}

 The dataset includes 4585 records from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023895-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ev7p62
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ziziphus mauritiana",
 "Country is Botswana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023896-250717081556266/datasets/export for details.
DOI: 10.5281/zenodo.16284790
title: NetTraffic

description: Este repositório contem um dataset nomeado de NetTraffic que possui dados relacionados a tráfego de um usuário em uma rede 5G simulada. O usuário acessou 3 tipos diferentes de serviços por 5 minutos. Serviços web ( sites: Portal IFPB, Booking, Wikipedia), serviços de VoIP (Discord e Linphone) e aplicações web interativas (serviços como Google Documentos e Google Planilhas). Os dados foram obtidos atravez de um código eBPF feito para capturar o tráfego de entrada da interface do dispositivo do usuário. Os dados recebidos foram salvos em um CSV e posteriormente foi feito o tratamento necessário para um dataset integro.
DOI: 10.5281/zenodo.16284791
title: NetTraffic

description: Este repositório contem um dataset nomeado de NetTraffic que possui dados relacionados a tráfego de um usuário em uma rede 5G simulada. O usuário acessou 3 tipos diferentes de serviços por 5 minutos. Serviços web ( sites: Portal IFPB, Booking, Wikipedia), serviços de VoIP (Discord e Linphone) e aplicações web interativas (serviços como Google Documentos e Google Planilhas). Os dados foram obtidos atravez de um código eBPF feito para capturar o tráfego de entrada da interface do dispositivo do usuário. Os dados recebidos foram salvos em um CSV e posteriormente foi feito o tratamento necessário para um dataset integro.
DOI: 10.15468/dl.cz46fy
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ziziphus mauritiana",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023897-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mbvdu6
title: Occurrence Download

description: A dataset containing 10122 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andryala ragusina"
 ]
}

 The dataset includes 10122 records from 159 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023894-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fsnvjy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ziziphus mauritiana",
 "Country is Cambodia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023898-250717081556266/datasets/export for details.
DOI: 10.15468/dl.r9g99g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Vireo altiloquus)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023899-250717081556266/datasets/export for details.
DOI: 10.15468/dl.kpep2w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyptis pectinata",
 "Country is Palau",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023901-250717081556266/datasets/export for details.
DOI: 10.15468/dl.vax8ae
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Vireo altiloquus)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023900-250717081556266/datasets/export for details.
DOI: 10.15468/dl.vkzu7x
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mangifera indica",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023903-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwx69x
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mangifera indica",
 "Country is Antigua and Barbuda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 25 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023902-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sjkn25
title: Occurrence Download

description: A dataset containing 53434 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allium sphaerocephalon"
 ]
}

 The dataset includes 53434 records from 826 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023869-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.95ebzq
title: Occurrence Download

description: A dataset containing 122649 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Empidonax occidentalis Nelson, 1897"
 ]
}

 The dataset includes 122649 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0379625-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112017075
title: Cuneiform Tablet 1913.14.0226, Spurlock 1913.14.0226

description: [Text Description:] Administrative tablet ❧ [Text or Publication Number Note:] Spurlock 1913.14.0226; CDLI P420608 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/1.5) ❧ [Physical Object Note:] 3 x 2.8 x 1.8 cm (19g) ❧ [Physical Object Note:] Seal impressions
DOI: 10.15468/dl.cfrarb
title: Occurrence Download

description: A dataset containing 2785 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melampus bidentatus Say, 1822"
 ]
}

 The dataset includes 2785 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091630-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swrk9e
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bashania Keng f. & T.P.Yi"
 ]
}

 The dataset includes 77 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0302660-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112039073
title: Cuneiform Tablet 1913.14.1699, Spurlock 1913.14.1699

description: [Text Description:] Document concerning wool given in exchange for linen ❧ [Text or Publication Number Note:] Spurlock 1913.14.1699; CDLI P421550 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/2) Yellowish Gray (10YR 8.5/2) Dark Gray (N 3.5/ 9.0% R) -dark discoloration ❧ [Physical Object Note:] 3 x 2.3 x 1.4 cm (9 g)
DOI: 10.6084/m9.figshare.31035361
title: Supplementary Material for: Short-term psychodynamic therapy of obsessive-compulsive disorder – a randomized controlled trial of unmedicated patients

description: Background: Obsessive-compulsive disorder (OCD) is a chronic and disabling mental disorder. Cognitive-behavioral therapy and serotonin-reuptake inhibitors and their combination are first-line treatments. However, about 50% of the patients do not achieve response or remission, although many patients received additional pharmacotherapy. These results highlight the need for additional evidence-based treatment options. 
Methods: In a randomized controlled trial (RCT) a manual-guided method of short-term psychodynamic therapy (STPP) for OCD was tested against a waiting list condition. Thirty-seven unmedicated patients were randomly assigned to STPP, 30 to the waiting list. The Y-BOCS total score post-therapy assessed by trained and masked raters was the primary outcome. Secondary outcomes included response, remission, depression, interpersonal problems and obsessive beliefs.
Results: In the intention-to-treat sample, STPP achieved a significantly lower Y-BOCS score (p &lt; 0.0001) than the waiting list condition, associated with a large between-group effect size (d=1.04). The mean difference of change in the Y-BOCS between baseline and post-therapy or waiting period assessment was -11.49 (95% CI -14.36, -8.63) for STPP and –1.10 (95% CI -4.29, 2.10) in the waiting-list. Remission rates were 55% vs 17% (p=0.0012), response rates 64% vs 17% (p=0.0003) in favor of STPP. 
Conclusion: In a first RCT, manual-guided STPP proved to be efficacious in OCD, thereby broadening the spectrum of evidence-based interventions. Of note, our study is one of the few trials using psychotherapy as a monotherapy in OCD, showing effects of psychotherapy alone. Further research is needed to replicate these findings and to compare STPP with other established treatments.
DOI: 10.6084/m9.figshare.31035361.v1
title: Supplementary Material for: Short-term psychodynamic therapy of obsessive-compulsive disorder – a randomized controlled trial of unmedicated patients

description: Background: Obsessive-compulsive disorder (OCD) is a chronic and disabling mental disorder. Cognitive-behavioral therapy and serotonin-reuptake inhibitors and their combination are first-line treatments. However, about 50% of the patients do not achieve response or remission, although many patients received additional pharmacotherapy. These results highlight the need for additional evidence-based treatment options. 
Methods: In a randomized controlled trial (RCT) a manual-guided method of short-term psychodynamic therapy (STPP) for OCD was tested against a waiting list condition. Thirty-seven unmedicated patients were randomly assigned to STPP, 30 to the waiting list. The Y-BOCS total score post-therapy assessed by trained and masked raters was the primary outcome. Secondary outcomes included response, remission, depression, interpersonal problems and obsessive beliefs.
Results: In the intention-to-treat sample, STPP achieved a significantly lower Y-BOCS score (p &lt; 0.0001) than the waiting list condition, associated with a large between-group effect size (d=1.04). The mean difference of change in the Y-BOCS between baseline and post-therapy or waiting period assessment was -11.49 (95% CI -14.36, -8.63) for STPP and –1.10 (95% CI -4.29, 2.10) in the waiting-list. Remission rates were 55% vs 17% (p=0.0012), response rates 64% vs 17% (p=0.0003) in favor of STPP. 
Conclusion: In a first RCT, manual-guided STPP proved to be efficacious in OCD, thereby broadening the spectrum of evidence-based interventions. Of note, our study is one of the few trials using psychotherapy as a monotherapy in OCD, showing effects of psychotherapy alone. Further research is needed to replicate these findings and to compare STPP with other established treatments.
DOI: 10.15156/bio/sh0164416.10fu
title: SH0164416.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.