cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.e3wbjq
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bathybates hornii)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009102-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jr7hsb
title: Occurrence Download

description: A dataset containing 211 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shelfordella lateralis"
 ]
}

 The dataset includes 211 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009103-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwzmr4
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callyodon bleekeri"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009104-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.skpmj7
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euphorbia nutans",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 191 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009105-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ncrcsw
title: Occurrence Download

description: A dataset containing 5357 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Geometry POLYGON((113.63274 22.77858,113.56599 22.86001,113.53261 22.88805,113.45507 22.92421,113.37752 22.92241,113.31274 22.89709,113.29115 22.87991,113.30194 22.8374,113.32452 22.80935,113.35004 22.78039,113.38243 22.7469,113.42562 22.72699,113.45507 22.71069,113.49826 22.67447,113.52672 22.6482,113.54636 22.60743,113.5709 22.58477,113.60329 22.57571,113.6131 22.54761,113.65237 22.53763,113.6877 22.55758,113.72304 22.57542,113.65335 22.73485,113.63274 22.77858))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5357 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009108-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.smspt4
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((42.26212 -10.33465,154.71374 -10.33465,154.71374 34.66535,42.26212 34.66535,42.26212 -10.33465))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Craigia W.W.Sm. & W.E.Evans"
 ]
}

 The dataset includes 25 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032340-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xuyb52
title: Occurrence Download

description: A dataset containing 1608 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-112.00510 2.89340,-58.99490 2.89340,-58.99490 24.10660,-112.00510 24.10660,-112.00510 2.89340))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mortoniodendron Standl. & Steyerm."
 ]
}

 The dataset includes 1608 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032343-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kmnb4p
title: Occurrence Download

description: A dataset containing 139859 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-149.84120 13.02192,-37.38959 13.02192,-37.38959 58.02192,-149.84120 58.02192,-149.84120 13.02192))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tilia L."
 ]
}

 The dataset includes 139859 records from 236 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032346-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uuskzp
title: Occurrence Download

description: A dataset containing 595297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tilia L."
 ]
}

 The dataset includes 595297 records from 2172 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032351-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14658505
title: Discord Unveiled: A Comprehensive Dataset of Public Communication (2015-2024)

description: Note: Download access has been temporarily suspended at the request of the ICWSM program chairs.This dataset accompanies a paper submitted to ICWSM 2025 and includes data from 3,167 distinct public Discord servers, containing all their public messages. With over 2 billion messages, the dataset is organized into 3,167 individual JSON files, compressed into dataset.zst, each named after the corresponding server's ID. An additional file, servers.json, provides an overview, description, metadata, and a guide for all the servers. For further details, please refer to the paper.

 

To decompress the dataset, use:

zstd -d -c {file_name}.zst | tar -xvf - -C {output_path}

 

Paper Link: 

arXiv

 

BibTeX formatted citation:

@misc{aquino2025discordunveiledcomprehensivedataset,      title={Discord Unveiled: A Comprehensive Dataset of Public Communication (2015-2024)},       author={Yan Aquino and Pedro Bento and Arthur Buzelin and Lucas Dayrell and Samira Malaquias and Caio Santana and Victoria Estanislau and Pedro Dutenhefner and Guilherme H. G. Evangelista and Luisa G. Porfírio and Caio Souza Grossi and Pedro B. Rigueira and Virgilio Almeida and Gisele L. Pappa and Wagner Meira Jr},      year={2025},      eprint={2502.00627},      archivePrefix={arXiv},      primaryClass={cs.SI},      url={https://arxiv.org/abs/2502.00627}, }

 

Version History

v6:- Content: Added 303 empty servers to "dataset.zst" and their respective metadata to "servers.json"- Content: "servers.json" and "servers_sample.json" renamed to "servers_metadata.json" and "servers_sample_metadata.json", respectively

v5:- Metadata: Updated DOI to match arXiv preprint version

v4:- Compression: Migrated from ZIP to Zstandard (.zst) format- Added: Complete "servers.json" file- Documentation: Expanded README with decompression instructions and BibTeX citation

v3:- Added: "servers_sample.json" file

v2:- Added: "dataset_sample.zip" file

v1:- Initial release- Core documentation
DOI: 10.5281/zenodo.13153016
title: Highly adaptable deep-learning platform for automated detection and analysis of vesicle exocytosis

description: Activity recognition in live-cell imaging is labor-intensive and requires significant human effort. Existing automated analysis tools are largely limited in versatility. We present the Intelligent Vesicle Exocytosis Analysis (IVEA) platform, an ImageJ plugin for automated, reliable analysis of fluorescence-labeled vesicle fusion events and other burst-like activity. IVEA includes three specialized modules for detecting: (1) synaptic transmission in neurons, (2) single-vesicle exocytosis in any cell type, and (3) nano-sensor-detected exocytosis. Each module uses distinct techniques, including deep learning, allowing the detection of rare events often missed by humans at a speed estimated to be approximately 60 times faster than manual analysis. IVEA's versatility can be expanded by refining or training new models via an integrated interface. With its impressive speed and remarkable accuracy, IVEA represents a seminal advancement in exocytosis image analysis and other burst-like fluorescence fluctuations applicable to a wide range of microscope types and fluorescent dyes.
description: This repository contains all the primary videos used to develop, train, and test IVEA.

IVEA's code, training data, and a few exemplary videos for testing purposes are freely available at: 10.5281/zenodo.15498139.
description: This work was supported by grants from the Deutsche Forschungsgemeinschaft (SFB 894 to U.B.), the European Commission (ERC-2021-SyG_951329 to the Department of Cellular Neurophysiology, Saarland University and to S.V., Cancer Research Center of Toulouse, INSERM UMR1037) and grants from University of Saarland (HOMFORexzellent2020 and NanoBioMed Young Investigator grant 2020 to H.-F.C.). A.H.S. was funded by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (grant agreement No 951275). C.P. was supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy - EXC 2067/1- 390729940. Q.T. was funded by the Medical Faculty of Saarland University (HOMFORexcellent). P.L. was supported by DFG (SFB894/A19). S.B. was supported by the Swedish Science Council, Diabetes Wellness Network Sweden, the Swedish Diabetes Society, the NovoNordisk Foundation, and Excellence of Diabetes Research in Sweden (EXODIAB).
description: Files with the prefix "Labeled Data Package" contain TIFF videos and their corresponding labeled data (ROI files) prepared in ImageJ. These datasets were used to train an encoder Vision Transformer (eViT) model for supervised deep learning in vesicle fusion event detection. Each package represents a distinct type of fusion event from different experimental conditions
DOI: 10.5281/zenodo.13153017
title: Highly adaptable deep-learning platform for automated detection and analysis of vesicle exocytosis

description: Activity recognition in live-cell imaging is labor-intensive and requires significant human effort. Existing automated analysis tools are largely limited in versatility. We present the Intelligent Vesicle Exocytosis Analysis (IVEA) platform, an ImageJ plugin for automated, reliable analysis of fluorescence-labeled vesicle fusion events and other burst-like activity. IVEA includes three specialized modules for detecting: (1) synaptic transmission in neurons, (2) single-vesicle exocytosis in any cell type, and (3) nano-sensor-detected exocytosis. Each module uses distinct techniques, including deep learning, allowing the detection of rare events often missed by humans at a speed estimated to be approximately 60 times faster than manual analysis. IVEA's versatility can be expanded by refining or training new models via an integrated interface. With its impressive speed and remarkable accuracy, IVEA represents a seminal advancement in exocytosis image analysis and other burst-like fluorescence fluctuations applicable to a wide range of microscope types and fluorescent dyes.
description: This repository contains all the primary videos used to develop, train, and test IVEA.

IVEA's code, training data, and a few exemplary videos for testing purposes are freely available at: 10.5281/zenodo.15498139.
description: This work was supported by grants from the Deutsche Forschungsgemeinschaft (SFB 894 to U.B.), the European Commission (ERC-2021-SyG_951329 to the Department of Cellular Neurophysiology, Saarland University and to S.V., Cancer Research Center of Toulouse, INSERM UMR1037) and grants from University of Saarland (HOMFORexzellent2020 and NanoBioMed Young Investigator grant 2020 to H.-F.C.). A.H.S. was funded by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (grant agreement No 951275). C.P. was supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy - EXC 2067/1- 390729940. Q.T. was funded by the Medical Faculty of Saarland University (HOMFORexcellent). P.L. was supported by DFG (SFB894/A19). S.B. was supported by the Swedish Science Council, Diabetes Wellness Network Sweden, the Swedish Diabetes Society, the NovoNordisk Foundation, and Excellence of Diabetes Research in Sweden (EXODIAB).
description: Files with the prefix "Labeled Data Package" contain TIFF videos and their corresponding labeled data (ROI files) prepared in ImageJ. These datasets were used to train an encoder Vision Transformer (eViT) model for supervised deep learning in vesicle fusion event detection. Each package represents a distinct type of fusion event from different experimental conditions
DOI: 10.5281/zenodo.15499249
title: IODP Expedition 399 Piece log

description: Dataset includes length data for every whole-round piece: bin length, whole-round piece length (measured by curation staff), and both the archive- and working-half piece lengths (optionally measured by scientists).
DOI: 10.5281/zenodo.15499250
title: IODP Expedition 399 Piece log

description: Dataset includes length data for every whole-round piece: bin length, whole-round piece length (measured by curation staff), and both the archive- and working-half piece lengths (optionally measured by scientists).
DOI: 10.5281/zenodo.15524734
title: GLIMS-RGI Lake-terminating glaciers: v1.0-subm

description: Global mapping of lake-terminating glaciers

A community mapping effort to classify lake-terminating levels for RGI v7.0 glacier outlines.
DOI: 10.15468/dl.i8afp0
title: Occurrence Download

description: A dataset containing 1483 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tremarctos ornatus (F.G.Cuvier, 1825)"
 ]
}

 The dataset includes 1483 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030119-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5j0330
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100359-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j9bcer
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019844-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/5ml-ext-9vv
title: Chamaecytisus hirsutus (L.) Link

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/81v-6r9-x1c
title: Rostraria smyrnacea (Trin.) H. Scholz

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/kde-9gr-6ym
title: Stipa holosericea Trin.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/57m-n5s-gxx
title: Lamium maculatum (L.) L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/eac-zd7-rem
title: Cardamine graeca L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/f9t-a4x-q6f
title: Cladanthus mixtus (L.) Chevall.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/0yf-gzw-g8h
title: Linum tenuifolium L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/dpq-jg8-xx8
title: Cicer montbretii Jaub. & Spach

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/abd-5ng-by9
title: Arum maculatum L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/ykf-szx-7aq
title: Poa bulbosa L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/zag-jqh-j47
title: Lotus longisiliquosus R. Roem.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/tt4-ax5-aw4
title: Sonchus L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/z83-7ng-dwj
title: Carpinus betulus L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/zq3-1gq-8pn
title: Teucrium polium L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/4rf-22m-zfb
title: Elatine ambigua Wight

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/ltw-8w5-h0a
title: Bupleurum fruticescens L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/97q-acw-4ph
title: Buxus sempervirens L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/mz4-n6c-z74
title: Saponaria glutinosa M. Bieb.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/w0n-47p-5dk
title: Sparganium emersum Rehmann

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/3l4-m85-2l8
title: Elymus L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/sx3-zyw-8t0
title: Acalypha virginica L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/7zm-5c8-01l
title: Rostraria Trin.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/shf-s8m-mq2
title: Logfia arvensis (L.) Holub

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/xcb-tpm-hlj
title: Coronilla scorpioides (L.) W. D. J. Koch

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/ale-1vq-r3d
title: Lagurus ovatus L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/fml-70t-mf7
title: Genista triacanthos Brot.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/r19-wvf-ar5
title: Volutaria muricata (L.) Maire

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/836-hlm-6vk
title: Petromarula pinnata (L.) A. DC.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/f48-cn0-9s6
title: Chaerophyllum temulum L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/hxn-x0h-gsr
title: Brachypodium distachyon (L.) P. Beauv.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/rc6-11y-ncr
title: Matricaria chamomilla L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/zyw-3xc-rjs
title: Thymus comptus Friv.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.pvjbbt
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bidens alba",
 "Country is Palau",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079885-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.68m67d
title: Occurrence Download

description: A dataset containing 12728 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anodorhynchus hyacinthinus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 12728 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079884-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13130/rd_unimi/qa4bro/ew0ubv
title: 250408_OPT1_TensileTest_632.tif

description: 250729_EXPERIMENTAL_DATA/250408_OPT1_Video 250408_OPT1_TensileTest_632.tif
DOI: 10.25549/inscriptifact-ouc1sto1610642
title: InscriptiFact -- an image database of inscriptions and artifacts

description: The InscriptiFact Collection is designed to allow access via the Internet to high-resolution images of ancient inscriptions and artifacts, primarily from the Near Eastern and Mediterranean Worlds. The targeted inscriptions constitute some of the world’s earliest written records, which are mostly housed in a number of international museums and libraries, as well as field projects where inscriptions still remain in situ. Included, for example, are, selected Dead Sea Scrolls; cuneiform tablets from Mesopotamia, Persia, Canaan and Egypt; early Jewish papyri from Egypt; lapidary inscriptions, primarily from Jordan, Lebanon and Cyprus; inscriptions on a variety of hard media (e.g., ostraca, copper, semi-precious stones, jar handles) mostly written in early Canaanite, Phoenician, Hebrew, Aramaic, Ammonite and Edomite; and much more. These ancient texts are foundational documents that serve as a point of reference for Judaism, Christianity, Islam and the cultures out of which they emerged. The name "InscriptiFact" is intended to convey the concept of a scholarly archive based on "facts" about "inscriptions" and "artifacts." West Semitic Research Project (WSRP) under the auspices of the University of Southern California (USC) is broadly acknowledged as a leader in the application of photographic and digital technologies to capture and analyze data of ancient texts. The West Semitic Research image archive now contains approximately 1,500,000 images. Important! Search terms with more than one word or number need to be enclosed in quotation marks.Guide to Searching InscriptiFact
DOI: 10.13130/rd_unimi/qa4bro/bzqmwt
title: 250408_OPT1_TensileTest_633.tif

description: 250729_EXPERIMENTAL_DATA/250408_OPT1_Video 250408_OPT1_TensileTest_633.tif
DOI: 10.13130/rd_unimi/qa4bro/fjhije
title: 250408_OPT1_TensileTest_634.tif

description: 250729_EXPERIMENTAL_DATA/250408_OPT1_Video 250408_OPT1_TensileTest_634.tif