cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7376648
title: Elucidating human male Germ Cell Development by studying Germ Cell Cancer

description: <br> Human germ cell development is regulated in a spatio-temporal manner by complex regulatory networks. Here, we summarize results obtained in germ cell tumors and respective cell lines and try to pinpoint similarities to normal germ cell development. This comparison allows speculating about the critical and error-prone mechanisms, which when disturbed, lead to the development of germ cell tumors. Short after specification, primordial germ cells express markers of pluripotency, which, in humans, persists up to the stage of fetal/infantile spermatogonia. Aside from the rare spermatocytic tumors, virtually all seminomas and embryonal carcinomas express markers of pluripotency and show signs of pluripotency or totipotency. Therefore, it appears that proper handling of the pluripotency program appears to be the most critical step in germ cell development in terms of tumor biology. Furthermore, data from mice reveal that germline cells display an epigenetic signature, which is highly similar to pluripotent cells. This signature (poised histone code, DNA hypomethylation) is required for the rapid induction of toti- and pluripotency upon fertilization. We propose that adult spermatogonial cells, when exposed to endocrine disruptors or epigenetic active substances, are prone to reinitiate the pluripotency program, giving rise to a germ cell tumor. The fact that pluripotent cells can be derived from adult murine and human testicular cells further corroborates this idea.
DOI: 10.6084/m9.figshare.7376648.v1
title: Elucidating human male Germ Cell Development by studying Germ Cell Cancer

description: <br> Human germ cell development is regulated in a spatio-temporal manner by complex regulatory networks. Here, we summarize results obtained in germ cell tumors and respective cell lines and try to pinpoint similarities to normal germ cell development. This comparison allows speculating about the critical and error-prone mechanisms, which when disturbed, lead to the development of germ cell tumors. Short after specification, primordial germ cells express markers of pluripotency, which, in humans, persists up to the stage of fetal/infantile spermatogonia. Aside from the rare spermatocytic tumors, virtually all seminomas and embryonal carcinomas express markers of pluripotency and show signs of pluripotency or totipotency. Therefore, it appears that proper handling of the pluripotency program appears to be the most critical step in germ cell development in terms of tumor biology. Furthermore, data from mice reveal that germline cells display an epigenetic signature, which is highly similar to pluripotent cells. This signature (poised histone code, DNA hypomethylation) is required for the rapid induction of toti- and pluripotency upon fertilization. We propose that adult spermatogonial cells, when exposed to endocrine disruptors or epigenetic active substances, are prone to reinitiate the pluripotency program, giving rise to a germ cell tumor. The fact that pluripotent cells can be derived from adult murine and human testicular cells further corroborates this idea.
DOI: 10.7284/129645
title: Radiometer data collected during research cruise OC1711C using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129646
title: Water Temperature data collected during research cruise OC1711C using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7376618
title: Data for Repository.xlsx

description: Pharmacological data on human (h) and zebrafish (zf) MC4R activation transfected alone or in combination with hMRAP2, zfMRAP2a or zfMRAP2b in HEK293 stimulated with graded doses of ACTH and a-MSH. Data are expressed as percentage of the basal values (Non-stimulated cells). <br>
DOI: 10.6084/m9.figshare.7376618.v1
title: Data for Repository.xlsx

description: Pharmacological data on human (h) and zebrafish (zf) MC4R activation transfected alone or in combination with hMRAP2, zfMRAP2a or zfMRAP2b in HEK293 stimulated with graded doses of ACTH and a-MSH. Data are expressed as percentage of the basal values (Non-stimulated cells). <br>
DOI: 10.7284/129650
title: Water Temperature data collected during research cruise OC1711C using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129649
title: Timeserver data collected during research cruise OC1711C using a Microsemi SyncServer S350 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129656
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1712A using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129659
title: Anemometer data collected during research cruise OC1712A using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129655
title: Fluorometer data collected during research cruise OC1712A using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7376564
title: Chicken feather hydrolysate as alternative peptone source for microbial cultivation

description: <b>Microbial growth rate data in medium with different chicken feather hydrolysates</b>
DOI: 10.6084/m9.figshare.7376564.v1
title: Chicken feather hydrolysate as alternative peptone source for microbial cultivation

description: <b>Microbial growth rate data in medium with different chicken feather hydrolysates</b>
DOI: 10.7284/129660
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1712A using a Furuno GP-90 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129665
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1712A using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129653
title: Gyrocompass data collected during research cruise OC1712A using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7376543.v1
title: Appedix

description: Support information
DOI: 10.7284/129654
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1712A using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129657
title: Radiometer data collected during research cruise OC1712A using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129658
title: Water Temperature data collected during research cruise OC1712A using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7376492.v2
title: Linkset: DBpedia Named Entities

description: This dataset is the result of data mining one year worth of articles abstracts (2017) using DBPedia spotlight.<br><br>The result is a series of links between SciGraph publications and DBpedia concepts. <br>Named Entity Recognition work carried out by Beyza Yaman. See also: https://github.com/dbpedia/sci-graph-links<br>A demo application for navigating these links is available at http://hacks2019.michelepasin.org/dbpedialinks/<br>See also:* https://scigraph.springernature.com/explorer
DOI: 10.7284/129663
title: Water Temperature data collected during research cruise OC1712A using a Sea-Bird SBE-48 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129662
title: Timeserver data collected during research cruise OC1712A using a Microsemi SyncServer S350 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129875
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1801A using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129878
title: Anemometer data collected during research cruise OC1801A using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7376465.v1
title: Dataset: Journals

description: The journals dataset includes information about all journal publications from Springer Nature. This dataset includes around 3,000 records, dating from 1839 to 2018. A journal record usually includes information about its publisher, imprint, license model, chief editor, external identifiers, subjects and impact factor when available.
DOI: 10.6084/m9.figshare.7376450
title: Schema: Technical Article Types

description: The Technical Article Types Taxonomy is a categorization of kinds of publication which are used to index and group content published by Springer Nature.
DOI: 10.7284/129874
title: Fluorometer data collected during research cruise OC1801A using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7376450.v1
title: Taxonomy: Technical Article Types

description: The Technical Article Types Taxonomy is a categorization of kinds of publication which are used to index and group content published by Springer Nature.
DOI: 10.6084/m9.figshare.7376453.v1
title: Taxonomy: Subjects

description: The Nature Subjects Taxonomy is a polyhierarchical categorization of scholarly subject areas which are used for the indexing of content by Springer Nature.
DOI: 10.7284/129879
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1801A using a Furuno GP-90 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7376435
title: Late-Neoproterozoic ferroan granitoids of the Transversal subprovince, Borborema Province, NE Brazil: petrogenesis and geodynamic implications

description: Ferroan granites (585–530 Ma) have been described in the Transversal subprovince of the Borborema Province (BP) and in Pan-African counterparts. They comprise two groups: Group 1 – slightly peraluminous to metaluminous, alkali-calcic rocks, with low Fe# mica and crystallized under intermediate fO<sub>2</sub> (Aroeiras Complex and Serra Branca – Coxixola dike swarms); Group 2 metaluminous to slightly peraluminous, alkalic to alkali-calcic rocks, with high Fe# mica and crystallized under low fO<sub>2</sub> (Queimadas and Prata intrusions). Group 1 marks transition from collision to transcurrence (ca. 585 Ma), or from transcurrence to uplift and transtension (ca. 545 Ma). Group 2 – represents granitoids intruded during extensional tectonics in transcurrent setting (ca. 550 Ma), or coeval with deposition of transtensional intracratonic basins (ca. 530 Ma). Hf and Nd model ages are older than 2.0 Ga, suggesting that the ferroan granitoids involved partial melting of Paleoproterozoic rocks. The data presented in this paper show that the ferroan magmatism was widespread in the BP and its counterparts in Africa in pre-drift reconstructions.
DOI: 10.6084/m9.figshare.7376441
title: Supplementary Material for: Short-Term Progression of Diabetic Hard Exudates Monitored with High-Resolution Camera

description: <b><i>Purpose:</i></b> To assess the progression of diabetic hard exudates over an 8-week period, using a high-resolution adaptive optics camera. <b><i>Design:</i></b> Prospective observational study. <b><i>Methods:</i></b> Five eyes of three patients presenting diabetic maculopathy with hard exudates were studied. An area of clinically visible exudates was imaged sequentially using SD-OCT and high-resolution flood illumination adaptive optics for 2 months, on a weekly basis. A time-lapse video was obtained for each eye studied. Changes in terms of surface, number of free elements (foci), and central macular thickness were recorded. <b><i>Results:</i></b> Short-term modifications in terms of disposition, size, and number of exudates were observed. Two patterns of progression were identified: two eyes showed exudate dislocation concomitant with the regression of the underlying macular edema, with hard exudates being progressively replaced by a multitude of smaller foci. These exudates were labeled resorption exudates. In three other eyes with persistent diabetic macular edema, foci aggregated into larger exudates. <b><i>Conclusion:</i></b> Diabetic hard exudate changes occurred over a short period of time but were not assessable clinically. Adaptive optics was able to document these subtle changes precisely. Further studies using this imaging modality may improve our understanding of the natural history of exudates and eventually help assess the efficacy of the various treatments available such as lipid-lowering drugs and anti-VEGFs injections.
DOI: 10.7284/129885
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1801A using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7376426
title: Supplementary Material for: Facial and Extrafacial Lesions in an Ethnically Diverse Series of 91 Patients with Frontal Fibrosing Alopecia Followed at a Single Center

description: <b><i>Background:</i></b> Various facial and extrafacial lesions have been reported in frontal fibrosing alopecia (FFA). Facial papules have been associated with worse prognosis. <b><i>Objectives:</i></b> We sought to detect the prevalence of facial and extrafacial lesions and to analyze their relation to demographic and clinical variables in a large and ethnically diverse series of patients with FFA. <b><i>Methods:</i></b> Charts of patients diagnosed with FFA between January 1, 2015, and December 31, 2017, at the Department of Dermatology, University of Miami, were reviewed retrospectively. <b><i>Results:</i></b> 91 patients (87 women and 4 men) met inclusion criteria: 45% (<i>n</i> = 41) were of Hispanic/Latino ethnicity, and 34% (<i>n</i> = 30) were premenopausal. Facial papules were most commonly detected (41% among Hispanic/Latino patients). Significant associations were found between: (1) Hispanic/Latino ethnicity and any FFA-associated facial lesions, facial papules alone, or lichen planus pigmentosus alone, as well as premenopausal status; (2) any FFA-associated facial lesions or facial papules alone and premenopausal status; and (3) Hispanic/Latino ethnicity and simultaneous presence of facial and extrafacial lesions. <b><i>Conclusions:</i></b> There is a significant association among Hispanic/Latino ethnicity, facial papules, and premenopausal status, which may portend a susceptibility to severer disease and prompt early and aggressive treatment in this group.
DOI: 10.6084/m9.figshare.7376435.v1
title: Late-Neoproterozoic ferroan granitoids of the Transversal subprovince, Borborema Province, NE Brazil: petrogenesis and geodynamic implications

description: Ferroan granites (585–530 Ma) have been described in the Transversal subprovince of the Borborema Province (BP) and in Pan-African counterparts. They comprise two groups: Group 1 – slightly peraluminous to metaluminous, alkali-calcic rocks, with low Fe# mica and crystallized under intermediate fO<sub>2</sub> (Aroeiras Complex and Serra Branca – Coxixola dike swarms); Group 2 metaluminous to slightly peraluminous, alkalic to alkali-calcic rocks, with high Fe# mica and crystallized under low fO<sub>2</sub> (Queimadas and Prata intrusions). Group 1 marks transition from collision to transcurrence (ca. 585 Ma), or from transcurrence to uplift and transtension (ca. 545 Ma). Group 2 – represents granitoids intruded during extensional tectonics in transcurrent setting (ca. 550 Ma), or coeval with deposition of transtensional intracratonic basins (ca. 530 Ma). Hf and Nd model ages are older than 2.0 Ga, suggesting that the ferroan granitoids involved partial melting of Paleoproterozoic rocks. The data presented in this paper show that the ferroan magmatism was widespread in the BP and its counterparts in Africa in pre-drift reconstructions.
DOI: 10.7284/129872
title: Gyrocompass data collected during research cruise OC1801A using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7376420
title: 2018_Pamminger_nectar_sugar_concentrations_peerJ_R1_corr

description: Data set of nectar sugar concentration pollinators can encounter in agrecultural landscapes around the globe.
DOI: 10.6084/m9.figshare.7376426.v1
title: Supplementary Material for: Facial and Extrafacial Lesions in an Ethnically Diverse Series of 91 Patients with Frontal Fibrosing Alopecia Followed at a Single Center

description: <b><i>Background:</i></b> Various facial and extrafacial lesions have been reported in frontal fibrosing alopecia (FFA). Facial papules have been associated with worse prognosis. <b><i>Objectives:</i></b> We sought to detect the prevalence of facial and extrafacial lesions and to analyze their relation to demographic and clinical variables in a large and ethnically diverse series of patients with FFA. <b><i>Methods:</i></b> Charts of patients diagnosed with FFA between January 1, 2015, and December 31, 2017, at the Department of Dermatology, University of Miami, were reviewed retrospectively. <b><i>Results:</i></b> 91 patients (87 women and 4 men) met inclusion criteria: 45% (<i>n</i> = 41) were of Hispanic/Latino ethnicity, and 34% (<i>n</i> = 30) were premenopausal. Facial papules were most commonly detected (41% among Hispanic/Latino patients). Significant associations were found between: (1) Hispanic/Latino ethnicity and any FFA-associated facial lesions, facial papules alone, or lichen planus pigmentosus alone, as well as premenopausal status; (2) any FFA-associated facial lesions or facial papules alone and premenopausal status; and (3) Hispanic/Latino ethnicity and simultaneous presence of facial and extrafacial lesions. <b><i>Conclusions:</i></b> There is a significant association among Hispanic/Latino ethnicity, facial papules, and premenopausal status, which may portend a susceptibility to severer disease and prompt early and aggressive treatment in this group.
DOI: 10.6084/m9.figshare.7376417
title: DataYgueletalForestEcolManage2018.txt

description: This file contain the data published in the main text of the article "Beyond species richness and biomass: impact of selective logging and silvicultural treatments on the functional composition of a neotropical forest" by Yguel et al. published in Forest ecology and management. Description of the variables are also found in the method section of the article. The meanings of the variable measured in 1984 (before the forest exploitation) and 2013 (27 years after the forest exploitation) are: TRTMT: silvicultural treatment C is the control (T0 in the article) and T1 to T3 corresponds to the silvicultural treatments with increasing exploitation intensity. LvraiZoo: Community weighted mean of seed length of zoochorous species measured in cm and on data with species level identification WvraiZoo: Community weighted mean of seed width of zoochorous species measured in cm and on data with species level identification LvernZoo: Community weighted mean of seed length of zoochorous species measured in cm and on data with vernacular identification WvernZoo: Community weighted mean of seed width of zoochorous species measured in cm and on data with vernacular identification The seed measurments are also measured for all species without the extension “Zoo” at the end of the variables. Woodensvrai: Community weighted mean of wood density of all species measured on data with species level identification. Wood density is expressed in g/cm<sup>3</sup>. Woodensvern: Community weighted mean of wood density of all species measured on data with vernacular identification. Wood density is expressed in g/cm<sup>3</sup>. Heliovrai: Community weighted mean of heliophily (affinity to light) of all species measured on data with species level identification. The measure is in percentage of Cecropia species in the ten closest individuals. Heliovern: Community weighted mean of heliophily (affinity to light) of all species measured on data with vernacular identification. The measure is in percentage of Cecropia species in the ten closest individuals. bcRichgenre: Corrected genus richness (see the method section of the article for details on measurement. The measure is in number of genus for the same sample size. agb1984cam: Above ground biomass for all species measured in 1984 in ton per hectare agb1984_comcam: Above ground biomass for commercial species in 1984 in ton per hectare
DOI: 10.6084/m9.figshare.7376363
title: A New Development of Non-local Image Denoising Using Fixed-Point Iteration For Non-Convex ‘ p Sparse Optimization

description: there is a .zip file containing commonly used standard digital images.