cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.948hfy
title: Occurrence Download

description: A dataset containing 4185348 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Zopfia rhizophila Rabenh., Puccinia asparagi DC., Botrytis tulipae (Lib.) Lind, Ophiomyia simplex (Loew, 1869), Plioreocepta poeciloptera (Schrank, 1776), Crioceris asparagi (Linnaeus, 1758), Creontiades dilutus (Stal, 1859), Iridopsis humaria (Guenée, 1857), Ercheia cyllaria (Cramer), Eogystia sibirica Alphéraky, 1895, Hyles livornica Esper, 1780, Oriolus kundoo Sykes, 1832, Pycnonotus luteolus (Lesson, 1841), Corvus macrorhynchos Wagler, 1827, Sturnia pagodarum (Gmelin, 1789), Leptocoma zeylonica (Linnaeus, 1766), Pastor roseus (Linnaeus, 1758), Turdoides striata (Dumont, 1823), Cinnyris asiaticus (Latham, 1790), Arizelocichla fusciceps (Shelley, 1893), Onychognathus walleri (Shelley, 1880), Tauraco schalowi (Reichenow, 1891), Tauraco livingstonii (G.R.Gray, 1864), Bycanistes bucinator (Temminck, 1824), Pogoniulus leucomystax (Sharpe, 1892), Arizelocichla milanjensis (Shelley, 1894), Paraxerus lucifer (Thomas, 1897), Columba arquatrix Temminck, 1808, Columba larvata Temminck, 1809, Cinnyricinclus leucogaster (Boddaert, 1783), Zosterops senegalensis Bonaparte, 1850, Pycnonotus barbatus (Desfontaines, 1789), Aulacorthum circumflexum (Buckton, 1876), Saissetia coffeae (Walker, 1852), Golovinomyces cynoglossi (Wallr.) V.P.Heluta, Anarta myrtilli Linnaeus, 1761, Omocena syrtis (Schaus & Clemens, 1893), Leucoma parva Plötz, 1880, Coleophora corsicella Walsingham, 1898, Coleophora polonicella Zeller, 1865, Icaricia saepiolus, Bombus nevadensis Cresson, 1874, Erysiphe astragali DC., Uromyces pisi-sativi (Pers.) Liro, Torymus iraklii Zerova & Seryogina, 2002, Plebejus argyrognomon (Virgstrassir, 1779), Lygephila pastinum Treitschke, 1826, Bembecia megillaeformis (Hübner, 1813), Bembecia puella Laštuvka, 1989, Coleophora astragalella Zeller, 1849)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4185348 records from 1220 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005891-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16983033
title: The homogenized glacier inventories for South Tirol 1997-2005-2017-2023

description: This data set comprises the new glacier inventory 2023 for the region of South Tirol and the revised versions of the existing inventories 1997, 2005 and 2017 in ESRI-Shapefile format.

The accompanying report describes the relevant data sources, the methods used, and the most important findings resulting from a comparison of the new glacier inventory 2023 with the existing inventories.
DOI: 10.5281/zenodo.16983032
title: The homogenized glacier inventories for South Tirol 1997-2005-2017-2023

description: This data set comprises the new glacier inventory 2023 for the region of South Tirol and the revised versions of the existing inventories 1997, 2005 and 2017 in ESRI-Shapefile format.

The accompanying report describes the relevant data sources, the methods used, and the most important findings resulting from a comparison of the new glacier inventory 2023 with the existing inventories.
DOI: 10.15468/dl.e4tmet
title: Occurrence Download

description: A dataset containing 5179 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prionoxystus robiniae Peck, 1818",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5179 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011079-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5azwxz
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "GadmGid is ESP.2_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chazara prieuri"
 ]
}

 The dataset includes 212 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011233-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ahjf2x
title: Occurrence Download

description: A dataset containing 876 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((80.03541 41.37667,73.99722 40.90858,73.10925 35.17957,77.19391 30.93936,82.52173 26.18411,90.95743 25.06324,98.77156 27.76675,104.89855 30.40474,104.54336 36.97363,103.03381 39.41575,89.89187 40.30185,80.03541 41.37667))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aconitum gymnandrum"
 ]
}

 The dataset includes 876 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011234-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.amtpyf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"USA.47.66_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011235-260108223611665/datasets/export for details.
DOI: 10.34894/16xrgp
title: 2029-01-14 - DataStream - CoreTrustSeal Requirements 2023-2025

description: CoreTrustSeal certification
DOI: 10.15468/dl.pb2z5c
title: Occurrence Download

description: A dataset containing 12249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((4.7395 49.70096,4.84811 49.70096,4.84811 49.79294,4.7395 49.79294,4.7395 49.70096))",
 "PublishingOrg is 1928bdf0-f5d2-11dc-8c12-b8a03c50a862",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 12249 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011236-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kes7zj
title: Occurrence Download

description: A dataset containing 78596 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-5.79829 42.80867,-5.63946 42.77759,-5.52904 42.84195,-5.57745 42.914,-5.66518 42.97379,-5.84216 42.96937,-5.90418 42.873,-5.79829 42.80867))",
 "Geometry POLYGON((-5.66732 42.9959,-5.92787 42.96982,-5.97396 42.93421,-5.99188 42.83101,-5.76142 42.76525,-5.53484 42.76682,-5.36327 42.89264,-5.49899 42.98263,-5.66732 42.9959))"
 ]
 },
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 78596 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011199-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18254409
title: Cienfuegosia sulphurea (A.St.-Hil.) Garcke. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:44
DOI: 10.5281/zenodo.18254410
title: Cienfuegosia sulphurea (A.St.-Hil.) Garcke. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:44
DOI: 10.71724/a6x3-wx04
title: Open data for publication: Sumanene-Conjugated Poly(amidoamine) Dendrimer for the Detection of Metal Cations in Aqueous Solution

description: <p class="MsoNormal"><span lang="EN-US">This
dataset constitutes the additional material for the publication entitled “Sumanene-Conjugated
Poly(amidoamine) Dendrimer for the Detection of Metal Cations in Aqueous
Solution” (ChemPlusChem, 2025, 90: e202500426, DOI: 10.1002/cplu.202500426) and
freely accessible supplementary information included in the published paper. Information
about the contents of the dataset can be found in the readme file.</span></p>
DOI: 10.5281/zenodo.17484052
title: Freshwater Mitochondrial Atlas (FMA) - Associated mitochondrial genomes

description: This repository contains 19'925 zipped mitochondrial genomes (Mitochondria.tar.gz) as well as the 3,727 Representatives (Mitochondria_Representatives.tar.gz) recovered from metagenomic datasets (n = 3,400 metagenomes). These genomes will soon be uploaded to the European Nucleotide Archive (ENA). Each mitochondrial genome is accompanied by a manifest text file (Manifests.tar.gz), as well as for the representatives files (Manifests_Representatives.tar.gz) detailing the sequencing technology and assembly algorithm used for its reconstruction.

Note: Each mitochondrial genome contains a dummy contig for technical reasons. Submissions should include only one contig per mitochondrial genome.
DOI: 10.5281/zenodo.18240920
title: Freshwater Mitochondrial Atlas (FMA) - Associated mitochondrial genomes

description: This repository contains 19'925 zipped mitochondrial genomes (Mitochondria.tar.gz) as well as the 3,727 Representatives (Mitochondria_Representatives.tar.gz) recovered from metagenomic datasets (n = 3,400 metagenomes). These genomes will soon be uploaded to the European Nucleotide Archive (ENA). Each mitochondrial genome is accompanied by a manifest text file (Manifests.tar.gz), as well as for the representatives files (Manifests_Representatives.tar.gz) detailing the sequencing technology and assembly algorithm used for its reconstruction.

Note: Each mitochondrial genome contains a dummy contig for technical reasons. Submissions should include only one contig per mitochondrial genome.
DOI: 10.15468/dl.3j4678
title: Occurrence Download

description: A dataset containing 649 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((93.55430 -6.08797,129.84876 -6.08797,129.84876 8.42360,93.55430 8.42360,93.55430 -6.08797))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gonocephalus bornensis",
 "Year 2015-2025"
 ]
}

 The dataset includes 649 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011237-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18254426
title: Cineraria L. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:44
DOI: 10.5281/zenodo.18254427
title: Cineraria L. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:44
DOI: 10.15468/dl.xw2r8u
title: Occurrence Download

description: A dataset containing 698 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phoxinus phoxinus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1965",
 "Year is less than or equal to 1969"
 ]
}

 The dataset includes 698 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011238-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18155125
title: DIASPARA - Habitat database

description: Continental and marine habitat for diadromous Fishes in Europe, United States and Canadian East coast. These files contain the referentials for river, lakes and catchments from hydrosheds, plus referentials based on hydroshed and ICES and GFCM referentials in the marine area to describe a hierarchy of habitats, for ICES diadromous fish working groups WGNAS, WGBAST and WGEEL.

 

Versions

Version 0.0.2 (January 2026) (THIS RELEASE)



  fixed geometry format in parquet for lakes


Version 0.0.1 (December 2025)



Eventual structural modifications depending on feedback from WGNAS and WGBAST

Adding referential table for WGEEL


Version 0.0.1-beta (July 2025)



Beta release for view and test by DIASPARA and WORKING GROUPS.

Integration with migdb vocabulary.

Starting the integration of specific tables.

Adding names to rivers corresponding to ICES vocabularies


Version 0.0.1-pre-beta (mid June 2025)



Adding referential tables for hierarchical structure

Structure for WGBAST and WGNAS


Version 0.0.1-alpha (mid February 2025)



Alpha release for view and test by DIASPARA

work here : Git issue using the hydrosheds


 

Download postgres database

#If you don't have postgres, download it, make sure to use the stackbuilder program to download postgis.
# open a shell with command CMD
# Move to the place where you have downloaded the file using the following command
  cd c:/path/to/my/folder
# note psql must be accessible, in windows you can add the path to the postgres 
#bin folder, otherwise you need to add the full path to the postgres bin folder see  link to instructions below    
#below I assume that the user you are using to postgres   
createdb -U postgres diaspara
psql -U postgres diaspara
# this will open a command with # where you can launch the following SQL command
CREATE EXTENSION postgis;
# You will need this because we only restore part of the database : the schema corresponding to different locations.
# Type \q to quit the psql program.

Now you will have saved the files in the c:/path/to/my/folder location where you are currently working.
You need to use pg_restore to restore the files, for instance if you want to use h_med_central.pgc

pg_restore -U postgres -f h_med_central.pgc 


Download Parquet format 

You can use the files straight from R or Qgis. To use with R you will need Arrow and DuckDB packages.

Tutorials

If you need any help to use those, please see the webinar videos and presentation documents that can be found here.

Project page

https://diaspara.bordeaux-aquitaine.inrae.fr

Specific work done by WP3 can be found here.

Description and details about the creation of the Habitat Database can be found here.

Acknowlegment

hydrosheds :

Linke, S., Lehner, B., Ouellet Dallaire, C., Ariwi, J., Grill, G., Anand, M., Beames, P., Burchard-Levine, V., Maxwell, S., Moidu, H., Tan, F., Thieme, M. (2019). Global hydro-environmental sub-basin and river reach characteristics at high spatial resolution. Scientific Data 6: 283. doi: https://doi.org/10.1038/s41597-019-0300-6
DOI: 10.5281/zenodo.14726598
title: DIASPARA - Habitat database

description: Continental and marine habitat for diadromous Fishes in Europe, United States and Canadian East coast. These files contain the referentials for river, lakes and catchments from hydrosheds, plus referentials based on hydroshed and ICES and GFCM referentials in the marine area to describe a hierarchy of habitats, for ICES diadromous fish working groups WGNAS, WGBAST and WGEEL.

 

Versions

Version 0.0.2 (January 2026) (THIS RELEASE)



  fixed geometry format in parquet for lakes


Version 0.0.1 (December 2025)



Eventual structural modifications depending on feedback from WGNAS and WGBAST

Adding referential table for WGEEL


Version 0.0.1-beta (July 2025)



Beta release for view and test by DIASPARA and WORKING GROUPS.

Integration with migdb vocabulary.

Starting the integration of specific tables.

Adding names to rivers corresponding to ICES vocabularies


Version 0.0.1-pre-beta (mid June 2025)



Adding referential tables for hierarchical structure

Structure for WGBAST and WGNAS


Version 0.0.1-alpha (mid February 2025)



Alpha release for view and test by DIASPARA

work here : Git issue using the hydrosheds


 

Download postgres database

#If you don't have postgres, download it, make sure to use the stackbuilder program to download postgis.
# open a shell with command CMD
# Move to the place where you have downloaded the file using the following command
  cd c:/path/to/my/folder
# note psql must be accessible, in windows you can add the path to the postgres 
#bin folder, otherwise you need to add the full path to the postgres bin folder see  link to instructions below    
#below I assume that the user you are using to postgres   
createdb -U postgres diaspara
psql -U postgres diaspara
# this will open a command with # where you can launch the following SQL command
CREATE EXTENSION postgis;
# You will need this because we only restore part of the database : the schema corresponding to different locations.
# Type \q to quit the psql program.

Now you will have saved the files in the c:/path/to/my/folder location where you are currently working.
You need to use pg_restore to restore the files, for instance if you want to use h_med_central.pgc

pg_restore -U postgres -f h_med_central.pgc 


Download Parquet format 

You can use the files straight from R or Qgis. To use with R you will need Arrow and DuckDB packages.

Tutorials

If you need any help to use those, please see the webinar videos and presentation documents that can be found here.

Project page

https://diaspara.bordeaux-aquitaine.inrae.fr

Specific work done by WP3 can be found here.

Description and details about the creation of the Habitat Database can be found here.

Acknowlegment

hydrosheds :

Linke, S., Lehner, B., Ouellet Dallaire, C., Ariwi, J., Grill, G., Anand, M., Beames, P., Burchard-Levine, V., Maxwell, S., Moidu, H., Tan, F., Thieme, M. (2019). Global hydro-environmental sub-basin and river reach characteristics at high spatial resolution. Scientific Data 6: 283. doi: https://doi.org/10.1038/s41597-019-0300-6
DOI: 10.5281/zenodo.18254435
title: Cineraria brasiliensis Spreng. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:44
DOI: 10.5281/zenodo.18254434
title: Cineraria brasiliensis Spreng. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:44
DOI: 10.15468/dl.rhv6mz
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"USA.47.67_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 39 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011239-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34933/1c42ed60-c30e-4e64-add2-47d5a4fc8ab9
title: Data for: Repeat-element RNAs integrate a neuronal growth circuit

description: Neuronal growth and regeneration are regulated by local translation of mRNAs in axons. We examined RNA polyadenylation changes upon sensory neuron injury and found upregulation of a subset of polyadenylated B2-SINE repeat elements, hereby termed GI-SINEs (growth-inducing B2-SINEs). GI-SINEs are induced from ATF3 and other AP-1 promoter-associated extragenic loci in injured sensory neurons but are not upregulated in lesioned retinal ganglion neurons. Exogenous GI-SINE expression elicited axonal growth in injured sensory, retinal, and corticospinal tract neurons. GI-SINEs interact with ribosomal proteins and nucleolin, an axon-growth-regulating RNA-binding protein, to regulate translation in neuronal cytoplasm. Finally, antisense oligos against GI-SINEs perturb sensory neuron outgrowth and nucleolin-ribosome interactions. Thus, a specific subfamily of transposable elements is integral to a physiological circuit linking AP-1 transcription with localized RNA translation.
DOI: 10.6084/m9.figshare.31072951
title: Feature Description

description: The textual description for all identified features accross the frameworks.
DOI: 10.6084/m9.figshare.31072951.v1
title: Feature Description

description: The textual description for all identified features accross the frameworks.
DOI: 10.5281/zenodo.18254104
title: Role of procurement practices on government construction project's performance

description: The data set contains the data collected through interview with key stakeholders of government constraction projects. The data capture stakeholders' insight, experiance and perspectives relevant to for the study on the influence of construction procurement on government project performance.
DOI: 10.5281/zenodo.18254105
title: Role of procurement practices on government construction project's performance

description: The data set contains the data collected through interview with key stakeholders of government constraction projects. The data capture stakeholders' insight, experiance and perspectives relevant to for the study on the influence of construction procurement on government project performance.
DOI: 10.5281/zenodo.18232379
title: Data for How Microplastics cross the Buoyancy Barrier: A multi-scale Study
DOI: 10.5281/zenodo.18232378
title: Data for How Microplastics cross the Buoyancy Barrier: A multi-scale Study
DOI: 10.15468/dl.byrzcg
title: Occurrence Download

description: A dataset containing 1945 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phoxinus phoxinus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1970",
 "Year is less than or equal to 1974"
 ]
}

 The dataset includes 1945 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011240-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.96vdnv
title: Occurrence Download

description: A dataset containing 215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Parnassius szechenyii"
 ]
}

 The dataset includes 215 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011241-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.