cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1305770.v1
title: Wikipedia Clickstream

description: <strong>About </strong> This dataset contains counts of (referer, article) pairs extracted from the request logs of English Wikipedia. When a client requests a resource by following a link, the URI of the webpage that linked to the resource is included in the request in an HTTP header called the "referer". This data captures 15 million (referer, article) pairs from a total of 2.3 billion requests collected during a 3-week period (January 8 to January 31, 2015). <strong>Data Preparation</strong><br>- The dataset only includes requests to articles in the main namespace of the desktop version of English Wikipedia (see https://en.wikipedia.org/wiki/Wikipedia:Namespace) - Requests to MediaWiki redirects are excluded - Spider traffic was excluded using the ua-parser library (https://github.com/tobie/ua-parser) - Referers were mapped to a fixed set of values corresponding to internal traffic or external traffic from one of the top 5 global traffic sources of English Wikipedia, based on this scheme:<br> - an article in the main namespace of English Wikipedia -&gt; the article title<br> - any Wikipedia page that is not in the main namespace of English Wikipedia -&gt; 'other-wikipedia'<br> - a page from any other Wikimedia project -&gt; 'other-internal'<br> - Google -&gt; 'other-google'<br> - Yahoo -&gt; 'other-yahoo'<br> - Bing -&gt; 'other-bing'<br> - Facebook -&gt; 'other-facebook'<br> - Twitter -&gt; 'other-twitter'<br> - an empty referer -&gt; 'other-empty'<br> - anything else -&gt; 'other' For the exact mapping see https://github.com/ewulczyn/wmf/blob/master/mc/oozie/hive_query.sql#L30-L48 - (referer, article) pairs with less than 10 observations were removed from the dataset <strong>Applications</strong><br>This data can be used for various purposes: - determining the most frequent links people click on for a given article<br>- determining the most common links people followed to an article<br>- determining how much of the total traffic to an article clicked on a link in that article<br>- generating a Markov chain over English Wikipedia <strong>Format</strong>:<br>- <strong>prev_id</strong>: if the referer does not correspond to an article in the main namespace of English Wikipedia, this value will be empty. Otherwise, it contains the unique MediaWiki page ID of the article corresponding to the referer i.e. the previous article the client was on<br>- <strong>curr_id</strong>: the MediaWiki unique page ID of the article the client requested<br>- <strong>n</strong>: the number of occurrences of the '(referer, article)' pair<br>- <strong>prev_title</strong>: the result of mapping the referer URL to the fixed set of values described above<br>- <strong>curr_title</strong>: the title of the article the client requested <strong>License</strong><br>All files included in this datasets are released under CC0: https://creativecommons.org/publicdomain/zero/1.0/ <strong>Source code</strong><br>https://github.com/ewulczyn/wmf/blob/master/mc/oozie/hive_query.sql (MIT license)
DOI: 10.6084/m9.figshare.1305760
title: MesoWest Climate Data 2010 Bearden Knob Station (BDKW2)

description: Station data downloaded from http://mesowest.utah.edu/ for the Bearden Knob Weather Station (BDKW2) for calander year 2010. http://mesowest.utah.edu/html/help/main_index.html#usage Column descriptions and units: DATETIME – date (mm/dd/yyyy) with time (hh:mm) TEMP – air temperature in degrees Celsius RELH – Relative humidity (%) WIND – hourly wind speed (m/s) GUST – peak wind speed gust during hour (m/s) DIR – wind speed direction (compass degrees) QFLG – Quality of data (OK = good to use; CAUTION = examine for incongruity) SOLAR – Incoming solar radiation (w/m^2) PRECIPcum – cumulative precipitation (cm) PRECIP – precip during past hour (cm) PEAK – duplicate column of max wind gust (m/s) PEAKDIR – direction of PEAK and GUST columns (compass degrees) DWP – dew point (degrees Celsius)
DOI: 10.6084/m9.figshare.1305759
title: Conservation implications of the introduction history of meadow fescue (<i>Festuca pratensis</i> Huds.) to the Driftless Area of the Upper Mississippi Valley, USA

description: <b><i>Background:</i></b> Meadow fescue (<i>Festuca pratensis</i>) is an important cold climate pasture grass that faces pressures from climate and land use change, competitive pressure and limited genetic diversity at the species level. Naturalised populations in the Driftless Area of the American Midwest may be beneficial for the conservation and agronomic improvement of the species.<b><i>Aims:</i></b> We explored the population structure and genetic diversity of Driftless Area meadow fescue populations, inferring their introduction histories to evaluate their potential contribution to conservation and breeding.<b><i>Methods:</i></b> We assigned plants sampled from 71 grasslands throughout the Driftless Area to genetically defined subpopulations based on neutral nuclear (nSSR) markers. Inter-population hybridisation and genetic diversity were combined with chloroplast haplotype scoring to infer introduction history.<b><i>Results:</i></b> We identified four subpopulations with distinct geographic distributions and haplotype composition, with 28% of sampled individuals representing admixtures of two or more subpopulations. There was moderate differentiation among subpopulations and sampling sites, with nonetheless high within-site diversity. Three chloroplast haplotypes were detected, occurring in different frequencies among subpopulations. Subpopulations appeared to have been derived from separate introductions of heterogeneous genetic material.<b><i>Conclusions:</i></b> Driftless Area meadow fescue populations are unlikely to contribute to conservation of locally adapted European varieties, but represent a valuable resource for the development of novel varieties and for preserving species-level genetic diversity.
DOI: 10.6084/m9.figshare.1305769.v1
title: In-order incremental Vietoris-Rips construction

description: Timing and growth rate data, as well as python scripts with a reference implementation and with testing functionality for the in-order incremental Vietoris-Rips constructions as proposed in Vejdemo-Johansson and Skraba: <em>Vietoris-Rips and persistent homology of streaming data</em> (2015).
DOI: 10.6084/m9.figshare.1305770.v2
title: Wikipedia Clickstream

description: <strong>About </strong> This dataset contains counts of (referer, article) pairs extracted from the request logs of English Wikipedia. When a client requests a resource by following a link, the URI of the webpage that linked to the resource is included in the request in an HTTP header called the "referer". This data captures 15 million (referer, article) pairs from a total of 2.3 billion requests collected during a 3-week period (January 8 to January 31, 2015). <strong>Data Preparation</strong><br>- The dataset only includes requests to articles in the main namespace of the desktop version of English Wikipedia (see https://en.wikipedia.org/wiki/Wikipedia:Namespace) - Requests to MediaWiki redirects are excluded - Spider traffic was excluded using the ua-parser library (https://github.com/tobie/ua-parser) - Referers were mapped to a fixed set of values corresponding to internal traffic or external traffic from one of the top 5 global traffic sources of English Wikipedia, based on this scheme:<br> - an article in the main namespace of English Wikipedia -&gt; the article title<br> - any Wikipedia page that is not in the main namespace of English Wikipedia -&gt; 'other-wikipedia'<br> - a page from any other Wikimedia project -&gt; 'other-internal'<br> - Google -&gt; 'other-google'<br> - Yahoo -&gt; 'other-yahoo'<br> - Bing -&gt; 'other-bing'<br> - Facebook -&gt; 'other-facebook'<br> - Twitter -&gt; 'other-twitter'<br> - an empty referer -&gt; 'other-empty'<br> - anything else -&gt; 'other' For the exact mapping see https://github.com/ewulczyn/wmf/blob/master/mc/oozie/hive_query.sql#L30-L48 - (referer, article) pairs with less than 10 observations were removed from the dataset <strong>Applications</strong><br>This data can be used for various purposes: - determining the most frequent links people click on for a given article<br>- determining the most common links people followed to an article<br>- determining how much of the total traffic to an article clicked on a link in that article<br>- generating a Markov chain over English Wikipedia <strong>Format</strong>:<br>- <strong>prev_id</strong>: if the referer does not correspond to an article in the main namespace of English Wikipedia, this value will be empty. Otherwise, it contains the unique MediaWiki page ID of the article corresponding to the referer i.e. the previous article the client was on<br>- <strong>curr_id</strong>: the MediaWiki unique page ID of the article the client requested<br>- <strong>n</strong>: the number of occurrences of the '(referer, article)' pair<br>- <strong>prev_title</strong>: the result of mapping the referer URL to the fixed set of values described above<br>- <strong>curr_title</strong>: the title of the article the client requested <strong>License</strong><br>All files included in this datasets are released under CC0: https://creativecommons.org/publicdomain/zero/1.0/ <strong>Source code</strong><br>https://github.com/ewulczyn/wmf/blob/master/mc/oozie/hive_query.sql (MIT license)
DOI: 10.6084/m9.figshare.1305759.v1
title: Conservation implications of the introduction history of meadow fescue (<i>Festuca pratensis</i> Huds.) to the Driftless Area of the Upper Mississippi Valley, USA

description: <b><i>Background:</i></b> Meadow fescue (<i>Festuca pratensis</i>) is an important cold climate pasture grass that faces pressures from climate and land use change, competitive pressure and limited genetic diversity at the species level. Naturalised populations in the Driftless Area of the American Midwest may be beneficial for the conservation and agronomic improvement of the species.<b><i>Aims:</i></b> We explored the population structure and genetic diversity of Driftless Area meadow fescue populations, inferring their introduction histories to evaluate their potential contribution to conservation and breeding.<b><i>Methods:</i></b> We assigned plants sampled from 71 grasslands throughout the Driftless Area to genetically defined subpopulations based on neutral nuclear (nSSR) markers. Inter-population hybridisation and genetic diversity were combined with chloroplast haplotype scoring to infer introduction history.<b><i>Results:</i></b> We identified four subpopulations with distinct geographic distributions and haplotype composition, with 28% of sampled individuals representing admixtures of two or more subpopulations. There was moderate differentiation among subpopulations and sampling sites, with nonetheless high within-site diversity. Three chloroplast haplotypes were detected, occurring in different frequencies among subpopulations. Subpopulations appeared to have been derived from separate introductions of heterogeneous genetic material.<b><i>Conclusions:</i></b> Driftless Area meadow fescue populations are unlikely to contribute to conservation of locally adapted European varieties, but represent a valuable resource for the development of novel varieties and for preserving species-level genetic diversity.
DOI: 10.6084/m9.figshare.1305760.v1
title: MesoWest Climate Data 2010 Bearden Knob Station (BDKW2)

description: Station data downloaded from http://mesowest.utah.edu/ for the Bearden Knob Weather Station (BDKW2) for calander year 2010. http://mesowest.utah.edu/html/help/main_index.html#usage Column descriptions and units: DATETIME – date (mm/dd/yyyy) with time (hh:mm) TEMP – air temperature in degrees Celsius RELH – Relative humidity (%) WIND – hourly wind speed (m/s) GUST – peak wind speed gust during hour (m/s) DIR – wind speed direction (compass degrees) QFLG – Quality of data (OK = good to use; CAUTION = examine for incongruity) SOLAR – Incoming solar radiation (w/m^2) PRECIPcum – cumulative precipitation (cm) PRECIP – precip during past hour (cm) PEAK – duplicate column of max wind gust (m/s) PEAKDIR – direction of PEAK and GUST columns (compass degrees) DWP – dew point (degrees Celsius)
DOI: 10.6084/m9.figshare.1305762.v1
title: MesoWest Climate data 2010 Bearden Knob Station (BDKW)

description: Station data downloaded from http://mesowest.utah.edu/ for the Bearden Knob Weather Station (BDKW)
DOI: 10.6084/m9.figshare.1305769.v3
title: In-order incremental Vietoris-Rips construction

description: Timing and growth rate data, as well as python scripts with a reference implementation and with testing functionality for the in-order incremental Vietoris-Rips constructions as proposed in Vejdemo-Johansson and Skraba: <em>Vietoris-Rips and persistent homology of streaming data</em> (2015).
DOI: 10.6084/m9.figshare.1305758
title: Climate-related variables and geographic distance affect fern species composition across a vegetation gradient in a shrinking hotspot

description: <b><i>Background:</i></b> The Atlantic Forest biome is a top hotspot for conservation priorities, but the variations in fern species composition and the factors driving these are still poorly known. The vegetation gradient found in the state of Santa Catarina, southern Brazil, constitutes an interesting environmental model for examining such patterns.<b><i>Aims:</i></b> We analysed the variation in fern species composition across a vegetation gradient in the southern Atlantic Forest and the variables that might influence it.<b><i>Methods:</i></b> We applied cluster analysis (TWINSPAN and WPGMA), ordination (DCA), regression (OLS and GWR) and variance partitioning to species occurrence, environmental and spatial data in 40 sample units (50 × 50 km<sup>2</sup>), using metadata.<b><i>Results:</i></b> Bioclimatic variables, mainly those related to humidity (water being an essential medium for fern reproduction), and geographic distance were related to variation in fern species composition. Dispersal constraints, probably related to neutral processes, could be evoked to explain the significance of the geographic distance. Overall, a great deal of uncertainty remained with regard to the determinants of floristic composition.<b><i>Conclusions:</i></b> Our study emphasises, for the first time in the Atlantic Forest, a significant role of environmental determinism and dispersal constraints on the variation of fern species composition.
DOI: 10.6084/m9.figshare.1305769.v2
title: In-order incremental Vietoris-Rips construction

description: Timing and growth rate data, as well as python scripts with a reference implementation and with testing functionality for the in-order incremental Vietoris-Rips constructions as proposed in Vejdemo-Johansson and Skraba: <em>Vietoris-Rips and persistent homology of streaming data</em> (2015).
DOI: 10.6084/m9.figshare.1305735
title: Molecular architecture of protein-RNA recognition sites

description: The molecular architecture of protein-RNA interfaces are analyzed using a non-redundant dataset of 152 protein-RNA complexes. We find that an average protein-RNA interface is smaller than an average protein-DNA interface but larger than an average protein–protein interface. Among the different classes of protein-RNA complexes, interfaces with tRNA are the largest, while the interfaces with the single-stranded RNA are the smallest. Significantly, RNA contributes more to the interface area than its partner protein. Moreover, unlike protein–protein interfaces where the side chain contributes less to the interface area compared to the main chain, the main chain and side chain contributions flipped in protein-RNA interfaces. We find that the protein surface in contact with the RNA in protein-RNA complexes is better packed than that in contact with the DNA in protein-DNA complexes, but loosely packed than that in contact with the protein in protein–protein complexes. Shape complementarity and electrostatic potential are the two major factors that determine the specificity of the protein-RNA interaction. We find that the H-bond density at the protein-RNA interfaces is similar with that of protein-DNA interfaces but higher than the protein–protein interfaces. Unlike protein-DNA interfaces where the deoxyribose has little role in intermolecular H-bonds, due to the presence of an oxygen atom at the 2′ position, the ribose in RNA plays significant role in protein-RNA H-bonds. We find that besides H-bonds, salt bridges and stacking interactions also play significant role in stabilizing protein-nucleic acids interfaces; however, their contribution at the protein–protein interfaces is insignificant.
DOI: 10.6084/m9.figshare.1305735.v1
title: Molecular architecture of protein-RNA recognition sites

description: The molecular architecture of protein-RNA interfaces are analyzed using a non-redundant dataset of 152 protein-RNA complexes. We find that an average protein-RNA interface is smaller than an average protein-DNA interface but larger than an average protein–protein interface. Among the different classes of protein-RNA complexes, interfaces with tRNA are the largest, while the interfaces with the single-stranded RNA are the smallest. Significantly, RNA contributes more to the interface area than its partner protein. Moreover, unlike protein–protein interfaces where the side chain contributes less to the interface area compared to the main chain, the main chain and side chain contributions flipped in protein-RNA interfaces. We find that the protein surface in contact with the RNA in protein-RNA complexes is better packed than that in contact with the DNA in protein-DNA complexes, but loosely packed than that in contact with the protein in protein–protein complexes. Shape complementarity and electrostatic potential are the two major factors that determine the specificity of the protein-RNA interaction. We find that the H-bond density at the protein-RNA interfaces is similar with that of protein-DNA interfaces but higher than the protein–protein interfaces. Unlike protein-DNA interfaces where the deoxyribose has little role in intermolecular H-bonds, due to the presence of an oxygen atom at the 2′ position, the ribose in RNA plays significant role in protein-RNA H-bonds. We find that besides H-bonds, salt bridges and stacking interactions also play significant role in stabilizing protein-nucleic acids interfaces; however, their contribution at the protein–protein interfaces is insignificant.
DOI: 10.6084/m9.figshare.1305733
title: Genome size and plastid trnK-matK markers give new insights into the evolutionary history of the genus <i>Lavandula</i> L.

description: The genus <i>Lavandula</i> L. consists of 39 species distributed from the North Atlantic Islands, across the Mediterranean Basin to India. We analysed 36 taxa of the genus <i>Lavandula</i> representing two of the three subgenera and six of the eight sections according to the most recent classification (Upson & Andrews 2004). We achieved a phylogenetic reconstruction from partial sequences from plastid trnK and matK genes; the genome size was estimated by flow cytometer measurements. The primary aim was to track phylogenetic patterns through the maternal inherited marker at the sectional level and identify possible genome duplications. The cpDNA tree shows the phylogenetic relationships between subgenus, sections and also elucidates for the first time the relationships between the endemic species of Macaronesia, Morocco and Arabia. The ancestral split between the two subgenera could be explained by dispersal followed by an early vicariance event. The <i>C</i>-value shows genome up-sizing within several phylogenetic clades and geographical areas. An ancestral genome-up sizing is characterized at the node of section <i>Dentatae</i> and <i>Lavandula</i>. The cpDNA tree suggests that the taxa <i>L. angustifolia</i> subsp. <i>pyrenaica</i> (DC.) Guinea and <i>L. stoechas</i> subsp. <i>luiseiri</i> are best treated as a distinct species.
DOI: 10.6084/m9.figshare.1305733.v2
title: Genome size and plastid trnK-matK markers give new insights into the evolutionary history of the genus <i>Lavandula</i> L.

description: The genus <i>Lavandula</i> L. consists of 39 species distributed from the North Atlantic Islands, across the Mediterranean Basin to India. We analysed 36 taxa of the genus <i>Lavandula</i> representing two of the three subgenera and six of the eight sections according to the most recent classification (Upson & Andrews 2004). We achieved a phylogenetic reconstruction from partial sequences from plastid trnK and matK genes; the genome size was estimated by flow cytometer measurements. The primary aim was to track phylogenetic patterns through the maternal inherited marker at the sectional level and identify possible genome duplications. The cpDNA tree shows the phylogenetic relationships between subgenus, sections and also elucidates for the first time the relationships between the endemic species of Macaronesia, Morocco and Arabia. The ancestral split between the two subgenera could be explained by dispersal followed by an early vicariance event. The <i>C</i>-value shows genome up-sizing within several phylogenetic clades and geographical areas. An ancestral genome-up sizing is characterized at the node of section <i>Dentatae</i> and <i>Lavandula</i>. The cpDNA tree suggests that the taxa <i>L. angustifolia</i> subsp. <i>pyrenaica</i> (DC.) Guinea and <i>L. stoechas</i> subsp. <i>luiseiri</i> are best treated as a distinct species.
DOI: 10.6084/m9.figshare.1305681
title: 75_F_F

description: Archive with graphs.
DOI: 10.6084/m9.figshare.1305733.v1
title: Genome size and plastid trnK-matK markers give new insights into the evolutionary history of the genus <i>Lavandula</i> L.

description: The genus <i>Lavandula</i> L. consists of 39 species distributed from the North Atlantic Islands, across the Mediterranean Basin to India. We analysed 36 taxa of the genus <i>Lavandula</i> representing two of the three subgenera and six of the eight sections according to the most recent classification (Upson & Andrews 2004). We achieved a phylogenetic reconstruction from partial sequences from plastid trnK and matK genes, the genome size was estimated by flow cytometer measurements. The primary aim was to track phylogenetic patterns through the maternal inherited marker at the sectional level and identify possible genome duplications. The cpDNA tree shows the phylogenetic relationships between subgenus, sections and also elucidates for the first time the relationships between the endemic species of Macaronesia, Morocco and Arabia. The ancestral split between the two subgenera could be explained by dispersal followed by an early vicariance event. The C-value shows genome up-sizing within several phylogenetic clades and geographical areas. An ancestral genome-up sizing is characterized at the node of section <i>Dentatae</i> and <i>Lavandula</i>. The cpDNA tree suggests the taxa <i>L. angustifolia</i> subsp. <i>pyrenaica</i> (DC.) Guinea and <i>L. stoechas</i> subsp. <i>luiseiri</i> are best treated as a distinct species.
DOI: 10.6084/m9.figshare.1305678
title: The Distance Travelled

description: This research examines historical and contemporary precedents (in terms of both visual artists and poetic sources) leading to the identification and evaluation of creative practitioners whose work resonates with and informs my own. Theoretical concerns that have emerged from the critical research are discussed, before a consideration of how my practical methodology and use of processes and materials relate not only to my own artistic interests but also to these theoretical concerns and creative precedents is offered.