cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.774792
title: Seawater carbonate chemistry, calcification rate, oxygen production, maximum quantum yield, symbiont density, chlorophyll concentration and crystal width of Halimeda macroloba, Halimeda cylindracea and Marginopora vertebralis during experiments, 2011

description: The effects of elevated CO2 and temperature on photosynthesis and calcification in the calcifying algae Halimeda macroloba and Halimeda cylindracea and the symbiont-bearing benthic foraminifera Marginopora vertebralis were investigated through exposure to a combination of four temperatures (28°C, 30°C, 32°C, and 34°C) and four CO2 levels (39, 61, 101, and 203 Pa; pH 8.1, 7.9, 7.7, and 7.4, respectively). Elevated CO2 caused a profound decline in photosynthetic efficiency (FV : FM), calcification, and growth in all species. After five weeks at 34°C under all CO2 levels, all species died. Chlorophyll (Chl) a and b concentration in Halimeda spp. significantly decreased in 203 Pa, 32°C and 34°C treatments, but Chl a and Chl c2 concentration in M. vertebralis was not affected by temperature alone, with significant declines in the 61, 101, and 203 Pa treatments at 28°C. Significant decreases in FV : FM in all species were found after 5 weeks of exposure to elevated CO2 (203 Pa in all temperature treatments) and temperature (32°C and 34°C in all pH treatments). The rate of oxygen production declined at 61, 101, and 203 Pa in all temperature treatments for all species. The elevated CO2 and temperature treatments greatly reduced calcification (growth and crystal size) in M. vertebralis and, to a lesser extent, in Halimeda spp. These findings indicate that 32°C and 101 Pa CO2, are the upper limits for survival of these species on Heron Island reef, and we conclude that these species will be highly vulnerable to the predicted future climate change scenarios of elevated temperature and ocean acidification.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
description: Supplement to: Sinutok, Sutinee; Hill, Ross; Doblin, Martina A; Wuhrer, Richard; Ralph, Peter J (2011): Warmer more acidic conditions cause decreased productivity and calcification in subtropical coral reef sediment-dwelling calcifiers. Limnology and Oceanography, 56(4), 1200-1212
DOI: 10.1594/pangaea.771572
title: Seawater carbonate chemistry and biological processes of Amphisorus hemprichii, Amphisorus kudakajimensis and Calcarina gaudichaudii during experiments, 2011

description: Ocean acidification, which like global warming is an outcome of anthropogenic CO2emissions, severely impacts marine calcifying organisms, especially those living in coral reef ecosystems. However, knowledge about the responses of reef calcifiers to ocean acidification is quite limited, although coral responses are known to be generally negative. In a culture experiment with two algal symbiont-bearing, reef-dwelling foraminifers, Amphisorus kudakajimensis and Calcarina gaudichaudii, in seawater under five different pCO2 conditions, 245, 375, 588, 763 and 907 µatm, maintained with a precise pCO2-controlling technique, net calcification of A. kudakajimensis was reduced under higher pCO2, whereas calcification of C. gaudichaudii generally increased with increased pCO2. In another culture experiment conducted in seawater in which bicarbonate ion concentrations were varied under a constant carbonate ion concentration, calcification was not significantly different between treatments in Amphisorus hemprichii, a species closely related to A. kudakajimensis, or in C. gaudichaudii. From these results, we concluded that carbonate ion and CO2 were the carbonate species that most affected growth ofAmphisorus and Calcarina, respectively. The opposite responses of these two foraminifer genera probably reflect different sensitivities to these carbonate species, which may be due to their different symbiotic algae.
description: Supplement to: Hikami, Mana; Ushie, Hiroyuki; Irie, Takahiro; Fujita, Kazuhiko; Kuroyanagi, Azumi; Sakai, Kazuhiko; Nojiri, Yukihiro; Suzuki, Atsushi; Kawahata, Hodaka (2011): Contrasting calcification responses to ocean acidification between two reef foraminifers harboring different algal symbionts. Geophysical Research Letters, 38, L19601
DOI: 10.1594/pangaea.954502
title: Chironomid counts of sediment core UDD-E from Lake Uddelermeer (The Netherlands) in 2012
DOI: 10.1594/pangaea.868943
title: Decoupled carbonate chemistry controls on the incorporation of boron into Orbulina universa

description: In order to fully constrain paleo-carbonate systems, proxies for two out of seven parameters, plus temperature and salinity are required. The boron isotopic composition (delta 11B) of planktonic foraminifera shells is a powerful tool to reconstruct changes in past surface ocean pH. As [B(OH)]4- is substituted into the biogenic calcite lattice in place of [CO3]2-, it has been suggested that B/Ca ratios in biogenic calcite are a possible proxy for [CO3]2-. However, differentiating between the effects of pH and [CO3]2- is problematic, as they co-vary closely in natural systems, and so the major control on boron incorporation remains unclear. To deconvolve the effects of pH and [CO3]2- on the B/Ca ratio and to test whether d11B remains constant at constant pH, but under changing [CO3]2- (pH 8.05 with 238, 285 and 532 µmol/kg [CO3]2-) and vice versa, we decoupled pH and [CO3]2- (276 +/- 19.5 µmol/kg [CO3]2- with pH 7.7, 7.9 and 8.05) and grew the planktonic foraminifer Orbulina universa in these manipulated culture media. Measurements of the isotope composition of boron and the B/Ca ratio were performed simultaneously using a femtosecond laser ablation system coupled to an MC ICP-MS. Results show that delta11B is controlled by pH and does not respond to changes in [CO3]2-. On the other hand, the B/Ca ratio is driven by [HCO3]- independently of pH. This suggests that B/Ca ratios in foraminiferal calcite may be used as a second, independent, proxy for paleo-carbonate system reconstructions.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-11-30.
description: Supplement to: Howes, Ella L; Kaczmarek, Karina; Raitzsch, Markus; Mewes, A; Bijma, N; Horn, Ingo; Misra, Sambuddha; Gattuso, Jean-Pierre; Bijma, Jelle (2017): Decoupled carbonate chemistry controls on the incorporation of boron into Orbulina universa. Biogeosciences, 14(2), 415-430
DOI: 10.1594/pangaea.848419
title: Ocean acidification induces biochemical and morphological changes in the calcification process of large benthic foraminifera

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2015-07-16.
DOI: 10.1594/pangaea.954131
title: Glycerol dialkyl glycerol tetraether (GDGT) concentrations from Lake Uddelermeer (The Netherlands) in 2012
DOI: 10.1594/pangaea.770067
title: Seawater carbonate chemistry and boron incorporation of planktic foraminifer Orbulina universa during experiments, 2011

description: Culture experiments with living planktic foraminifers reveal that the ratio of boron to calcium (B/Ca) in Orbulina universa increases from 56 to 92 µmol mol-1 when pH is raised from 7.61 +/- 0.02 to 8.67 +/- 0.03 (total scale). Across this pH range, the abundances of carbonate, bicarbonate, and borate ions also change (+ 530, - 500, and + 170 µmol kg-1, respectively). Thus specific carbonate system control(s) on B/Ca remain unclear, complicating interpretation of paleorecords. B/Ca in cultured O. universa also increases with salinity (55-72 µmol mol-1 from 29.9-35.4 per mil) and seawater boron concentration (62-899 µmol mol-1 from 4-40 ppm B), suggesting that these parameters may need to be taken into account for paleorecords spanning large salinity changes (~ 2 per mil) and for samples grown in seawater whose boron concentration ([B]SW) differs from modern by more than 0.25 ppm. While our results are consistent with the predominant incorporation of the charged borate species B(OH)4 into foraminiferal calcite, the behavior of the partition coefficient KD (defined as [B/Ca]calcite/B(OH)4/HCO3seawater) cannot be explained by borate incorporation alone, and suggests the involvement of other pH-sensitive ions such as CO3 For a given increase in seawater B(OH)4, the corresponding increase in B/Ca is stronger when B(OH)4 is raised by increasing [B]SW than when it is raised by increasing pH. These results suggest that B incorporation controls should be reconsidered. Additional insight is gained from laser-ablation ICP-MS profiles, which reveal variable B/Ca distributions within individual shells.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
description: Supplement to: Allen, Katherine A; Hönish, Bärbel; Eggins, Stephen M; Yu, Jimin; Spero, Howard J; Elderfield, Henry (2011): Controls on boron incorporation in cultured tests of the planktic foraminifer Orbulina universa. Earth and Planetary Science Letters, 309(3-4), 291-301
DOI: 10.1594/pangaea.963549
title: Seawater carbonate chemistry and calcification in two large, benthic foraminiferal species

description: We report growth of two large benthic photosymbiont-bearing foraminifera, Heterostegina depressa and Amphistegina lessonii, cultured at four different ocean acidification scenarios (400, 700, 1000 and 2200 ppm atmospheric pCO2). Using the alkalinity anomaly technique, we calculated the amount of calcium carbonate precipitated during the incubation. The chamber addition rates for each of the conditions were also determined.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-09-06.
DOI: 10.1594/pangaea.954505
title: Pollen counts of sediment core UDD-E from Lake Uddelermeer (The Netherlands) in 2012

description: Pollen classification as used by Engels et al. (2016, doi:doi:10.1177/0959683616632890) is provided:TS = Trees and ShrubsHea = Heathland taxaHI = Upland herbaceous taxaSP = Spore plantsSA = Swamp and Aquatic plantsAlg = AlgaeFun = FungiOth = Other (/unclassified)
DOI: 10.1594/pangaea.869319
title: Interpreting the role of pH on stable isotopes in large benthic foraminifera

description: Large benthic foraminifera (LBF) are prolific producers of calcium carbonate sediments in shallow, tropical environments that are being influenced by ocean acidification (OA). Two LBF species, Amphistegina gibbosa (Order Rotaliida) with low-Mg calcite tests and Archaias angulatus (Order Miliolida) with high-Mg calcite tests, were studied to assess the effects of pH 7.6 on oxygen and carbon isotopic fractionation between test calcite and ambient seawater. The delta 18O and delta 13C values of terminal chambers and of whole adult tests of both species after 6 weeks were not significantly different between pH treatments of 8.0 and 7.6. However, tests of juveniles produced during the 6-week treatments showed significant differences between delta 18O and delta 13C values from control (pH 8.0) when compared with the treatment (pH 7.6) for both species. Although each individual's growth was photographed and measured, difficulty in distinguishing and manually extracting newly precipitated calcite from adult specimens likely confounded any differences in isotopic signals. However, juvenile specimens that resulted from asexual reproduction that occurred during the experiments did not contain old carbonate that could confound the new isotopic signals. These data reveal a potential bias in the design of OA experiments if only adults are used to investigate changes in test chemistries. Furthermore, the results reaffirm that different calcification mechanisms in these two foraminiferal orders control the fractionation of stable isotopes in the tests and will reflect decreasing pH in seawater somewhat differently.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-12-12.
description: Supplement to: Robbins, Lisa L; Knorr, Paul O; Wynn, Jonathan G; Hallock, Pamela; Harries, P J (2016): Interpreting the role of pH on stable isotopes in large benthic foraminifera. ICES Journal of Marine Science, fsw056
DOI: 10.1594/pangaea.957794
title: Seawater carbonate chemistry and impact of different carbonate system parameters on benthic foraminifera from controlled growth experiments

description: Insights into past marine carbon cycling and water mass properties can be obtained by means of geochemical proxies calibrated through controlled laboratory experiments with accurate seawater carbonate system (C-system) manipulations. Here, we explored the use of strontium/calcium ratio (Sr/Ca) of the calcite shells of benthic foraminifera as a potential seawater C-system proxy through a controlled growth experiment with two deep-sea species (Bulimina marginata and Cassidulina laevigata) and one intertidal species (Ammonia T6). To this aim, we used two experimental set-ups to decouple as much as possible the individual components of the carbonate system, i.e., changing pH at constant dissolved inorganic carbon (DIC) and changing DIC at constant pH. Four climatic chambers were used with different controlled concentrations of atmospheric pCO2 (180 ppm, 410 ppm, 1000 ppm, 1500 ppm). Our results demonstrated that pH did not influence the survival and growth of the three species. However, low DIC conditions (879 μmol kg−1) negatively affected B. marginata and C. laevigata through reduced growth, whereas no effect was observed for Ammonia T6. Our results also showed that Sr/Ca was positively correlated with total Alkalinity (TA), DIC and bicarbonate ion concentration ([HCO3−]) for Ammonia T6 and B. marginata; i.e., DIC and/or [HCO3−] were the main controlling factors. For these two species, the regression models were coherent with published data (existing so far only for Ammonia T6) and showed overall similar slopes but different intercepts, implying species-specific effects. Furthermore, the Sr/Ca – C-system relationship was not impacted by ontogenetic trends between chamber stages, which is a considerable advantage for paleo-applications. This applied particularly to Ammonia T6 that calcified many chambers compared to the two other species. However, no correlation with any of the C-system parameters was observed for Sr/Ca in C. laevigata. This might imply either a strong species-specific effect and/or a low tolerance to laboratory conditions leading to a physiological stress, thereby impacting the Sr incorporation into the calcite lattice of C. laevigata.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-04-20.
DOI: 10.1594/pangaea.923754
title: Ocean temperature and salinity in McMurdo Sound, Antarctica in 2016

description: Ocean salinity was recorded at 10 second intervals by a Seabird Electronics SBE 37 microCAT CTD at a nominal depth of 100 m in McMurdo Sound at 77.6152 °S, 164.8821 °E. The dates covered by the salinity observations at 100 m depth are from 28-10-2016 06:43:11 UTC to 13-11-2016 21:59:51 UTC. The salinity is reported in units of practical salinity. Ocean temperature was recorded at 10 second intervals by a Seabird Electronics SBE 56 thermistor at a nominal depth of 75 m in McMurdo Sound at 77.6152 °S, 164.8821 °E. The dates covered by the temperature observations at 75 m depth are from 28-10-2016 06:43:11 UTC to 13-11-2016 21:59:51 UTC. The temperature is reported in units of °C in the ITS-90 temperature scale.
DOI: 10.1594/pangaea.923860
title: Seawater carbonate chemistry and foraminiferal calciﬁcation

description: The response of the marine carbon cycle to changes in atmospheric CO2 concentrations will be determined, in part, by the relative response of calcifying and non-calcifying organisms to global change. Planktonic foraminifera are responsible for a quarter or more of global carbonate production, therefore understanding the sensitivity of calcification in these organisms to environmental change is critical. Despite this, there remains little consensus as to whether, or to what extent, chemical and physical factors affect foraminiferal calcification. To address this, we directly test the effect of multiple controls on calcification in culture experiments and core-top measurements of Globigerinoides ruber. We find that two factors, body size and the carbonate system, strongly influence calcification intensity in life, but that exposure to corrosive bottom waters can overprint this signal post mortem. Using a simple model for the addition of calcite through ontogeny, we show that variable body size between and within datasets could complicate studies that examine environmental controls on foraminiferal shell weight. In addition, we suggest that size could ultimately play a role in determining whether calcification will increase or decrease with acidification. Our models highlight that knowledge of the specific morphological and physiological mechanisms driving ontogenetic change in calcification in different species will be critical in predicting the response of foraminiferal calcification to future change in atmospheric pCO2.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-10-14.
DOI: 10.1594/pangaea.923755
title: Ocean temperature and salinity in McMurdo Sound, Antarctica in 2017

description: Ocean salinity was recorded at 10 second intervals by a Seabird Electronics SBE 37 microCAT CTD at a nominal depth of 100 m in McMurdo Sound at 77.6152 °S, 164.8821 °E. The dates covered by the salinity observations at 100 m depth are from 28-10-2016 06:43:11 UTC to 13-11-2016 21:59:51 UTC. The salinity is reported in units of practical salinity. Ocean temperature was recorded at 10 second intervals by a Seabird Electronics SBE 56 thermistor at a nominal depth of 75 m in McMurdo Sound at 77.6152 °S, 164.8821 °E. The dates covered by the temperature observations at 75 m depth are from 3-11-2017 08:26:01 UTC to 20-11-2017 23:00:01 UTC. The temperature is reported in units of °C in the ITS-90 temperature scale.
DOI: 10.1594/pangaea.923815
title: Seawater carbonate chemistry and survival and growth of four agglutinating foraminifera

description: Agglutinated foraminifera create a shell by assembling particles from the sediment and comprise a significant part of the foraminiferal fauna. Despite their high abundance and diversity, their response to environmental perturbations and climate change is relatively poorly studied. Here we present results from a culture experiment with four different species of agglutinating foraminifera incubated in artificial substrate and exposed to different pCO2 conditions, in either dysoxic or oxic settings. We observed species-specific reactions (i.e., reduced or increased chamber formation rates) to dysoxia and/or acidification. While chamber addition and/or survival rates of Miliammina fusca and Trochammina inflata were negatively impacted by either dysoxia or acidification, respectively, Textularia tenuissima and Spiroplectammina biformis had the highest survivorship and chamber addition rates with combined high pCO2 (2000 ppm) and low O2 (0.7 ml/l) conditions. The differential response of these species indicates that not all agglutinating foraminifera are well-adapted to conditions induced by predicted climate change, which may result in a shift in foraminiferal community composition.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-09-27.