cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13670089
title: Alterations in bile acid metabolizing gut microbiota and specific bile acid genes as a precision medicine to subclassify NAFLD

description: Multiple mechanisms for the gut microbiome contributing to the pathogenesis of non-alcoholic fatty liver disease (NAFLD) have been implicated. Here, this post-hoc study aim to investigate the contribution and potential application for altered bile acid (BA) metabolizing microbes in NAFLD using whole metagenome sequencing (WMS) data. The discovery cohort consisted of 86 well-characterized biopsy-proven NAFLD patients and 38 healthy controls. Assembly-based analysis was performed to identify BA-metabolizing microbes. Statistical tests, feature selection and microbial co-abundance analysis were integrated to identify microbial alterations and markers in NAFLD. An independent validation cohort was subjected to similar analyses. NAFLD microbiota exhibited decreased diversity and microbial associations. We established a classifier model with 53 differential species exhibiting a robust diagnostic accuracy (AUC=0.97) for dectecting NAFLD.
DOI: 10.6084/m9.figshare.19959724
title: Additional file 1 of Identification of ruptured intracranial aneurysms using the aneurysm-specific prediction score in patients with multiple aneurysms with subarachnoid hemorrhages- a Chinese population based external validation study

description: Additional file 1.
DOI: 10.34740/kaggle/dsv/7571353
title: COVID Vaccination in World (updated daily)
DOI: 10.6084/m9.figshare.19959724.v1
title: Additional file 1 of Identification of ruptured intracranial aneurysms using the aneurysm-specific prediction score in patients with multiple aneurysms with subarachnoid hemorrhages- a Chinese population based external validation study

description: Additional file 1.
DOI: 10.6084/m9.figshare.7377617
title: Additional file 5: of knnAUC: an open-source R package for detecting nonlinear dependence between one continuous variable and one binary variable

description: The simulation power of knnAUC with different ratios in nine simple functions. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.8426258.v1
title: Additional file 2: of Early-life determinants of hypoxia-inducible factor 3A geneÂ (HIF3A) methylation: a birth cohort study

description: Tables of the pairwise associations between the HIF3A.1 and HIF3A.2 CpG units measured in this study. The first spreadsheet in the file gives the r values, the second spreadsheet gives the p values. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.22581979.v1
title: Robust Low-rank Tensor Decomposition with the L<sub>2</sub> Criterion

description: The growing prevalence of tensor data, or multiway arrays, in science and engineering applications motivates the need for tensor decompositions that are robust against outliers. In this paper, we present a robust Tucker decomposition estimator based on the L<sub>2</sub> criterion, called the Tucker-L2E. Our numerical experiments demonstrate that Tucker-L2E has empirically stronger recovery performance in more challenging high-rank scenarios compared with existing alternatives. The appropriate Tucker-rank can be selected in a data-driven manner with cross-validation or hold-out validation. The practical effectiveness of Tucker-L2E is validated on real data applications in fMRI tensor denoising, PARAFAC analysis of fluorescence data, and feature extraction for classification of corrupted images.
DOI: 10.6084/m9.figshare.25152158
title: Supplementary Material for: Successful Management of Familial Exudative Vitreoretinopathy with a Large Macular Hole Using Inverted Internal Limiting Membrane Flap Technique

description: <b><i>Introduction:</i></b> This case report aims to shed light on a rare presentation of familial exudative vitreoretinopathy (FEVR) co-existing with a large full-thickness macular hole (FTMH) in a 16-year-old male and discuss its successful surgical management, thereby adding to the limited existing knowledge on this topic. <b><i>Case Presentation:</i></b> Over an 8-month period, the patient had experienced progressively worsening visual blurring and distortion in his left eye. Following a comprehensive examination, diagnosis confirmed FEVR and an accompanying large FTMH. It was hypothesized that this unusual manifestation resulted from the tractional forces exerted by a thick posterior vitreous membrane and a thin epiretinal membrane – a distinctive attribute of FEVR. The patient underwent surgical intervention, which included pars plana vitrectomy (PPV), internal limiting membrane (ILM) peeling, gas tamponade, and the inverted ILM flap technique. Postoperative outcomes were favorable, with the FTMH successfully closed and substantial improvement observed in the patient’s visual acuity at the 3-month follow-up visit. <b><i>Conclusion:</i></b> This case report highlights a rare association of FEVR with FTMH, thereby broadening our understanding of potential complications in patients with FEVR. The successful surgical intervention reinforces the utility of the PPV and the inverted ILM flap technique in managing such complications. It underscores the need for clinicians to maintain vigilance for such atypical manifestations in FEVR patients.
DOI: 10.6084/m9.figshare.8426270.v1
title: Additional file 4: of Early-life determinants of hypoxia-inducible factor 3A geneÂ (HIF3A) methylation: a birth cohort study

description: Summary tables of the univariate tests between rs3810298 genotype and (a) pre-eclampsia, (b) gestational diabetes, (c) birth weight, and (d) gestational age. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8426303
title: MOESM1 of The volumetric-tumour histogram-based analysis of intravoxel incoherent motion and non-Gaussian diffusion MRI: association with prognostic factors in HER2-positive breast cancer

description: Additional file 1. All the parameters of histogram analysis for the whole tumour in different groups.
DOI: 10.6084/m9.figshare.8426306.v1
title: Additional file 2: of Rare diseases in China: analysis of 2014â 2015 hospitalization summary reports for 281 rare diseases from 96 tertiary hospitals

description: The number of hospitalizations with each rare disease in TRDL 2017. (XLSX 275 kb)
DOI: 10.6084/m9.figshare.21532674
title: Additional file 2 of Motor neuron survival is associated with reduced neuroinflammation and increased autophagy after brachial plexus avulsion injury in aldose reductase-deficient mice

description: Additional file 2. Raw data of western blot.
DOI: 10.6084/m9.figshare.19959958.v1
title: Additional file 11 of Evolution and functional diversification of catalase genes in the green lineage

description: Additional file 11: Table S6. The identity level of CATs in specific higher plants.
DOI: 10.6084/m9.figshare.21533531
title: Circadian clock disruption aggravates alcohol liver disease in an acute mouse model

description: Circadian rhythms are important for organisms to adapt to the environment and maintain homeostasis. Disruptions of circadian rhythms contribute to the occurrence, progression, and exacerbation of diseases, such as cancer, psychiatric disorders, and metabolic disorders. Alcohol-induced liver disease (ALD) is one of the most prevalent liver diseases. Disruptions of the circadian clock enhance the ALD symptoms using chronic mice models or genetic manipulated mice. However, chronic models are time consuming and clock gene deletions interfere with metabolisms. Here, we report that constant light (LL) condition significantly disrupted the circadian clock in an acute ALD model, resulting in aggravated ALD phenotypes in wild type mice. Comparative transcriptome analysis revealed that the alcohol feeding affected the circadian pathway, as well as metabolic pathways. The acute alcohol feeding plus the LL condition further interfered with metabolic pathways and dysregulated canonical circadian gene expressions. These findings support the idea that disrupting the circadian clock could provide an improved ALD mouse model for further applications, such as facilitating identification of potential therapeutic targets for the prevention and treatment of ALD. <b>Abbreviations:</b> ALD, alcohol-induced liver disease; LD, 12 h light _ 12 h dark; LL, constant light; HF, high-fat liquid control diet; ETH, ethanol-containing diet; NIAAA, National Institute on Alcohol Abuse and Alcoholism; TTFLs, transcription-translation feedback loops; FDA, US Foods and Drug Administration; NAFLD, non-alcoholic fatty liver disease; RER, respiratory exchange rate; DEGs, differentially expressed genes; H&E, haematoxylin and eosin; ALT, alanine transaminase; AST, aspartate transaminase; TG, triglycerides.
DOI: 10.6084/m9.figshare.8426306
title: Additional file 2: of Rare diseases in China: analysis of 2014â 2015 hospitalization summary reports for 281 rare diseases from 96 tertiary hospitals

description: The number of hospitalizations with each rare disease in TRDL 2017. (XLSX 275 kb)
DOI: 10.6084/m9.figshare.19959955
title: Additional file 10 of Evolution and functional diversification of catalase genes in the green lineage

description: Additional file 10: Table S5. Homology matrix of 43 CAT sequences in angiosperms.
DOI: 10.6084/m9.figshare.22351093
title: An Evaluation of Planning Techniques Impacting Construction Project Performance in Nigeria

description: This dataset contains analyzed responses from a surveyed questionnaire administered to medium and large-scale construction firms in Lagos State, Nigeria. The analysis was based on evaluating the planning techniques used among the firms and their effects on project cost and duration. The analysis was carried out using mean score and percentage.
DOI: 10.6084/m9.figshare.22351093.v1
title: An Evaluation of Planning Techniques Impacting Construction Project Performance in Nigeria

description: This dataset contains analyzed responses from a surveyed questionnaire administered to medium and large-scale construction firms in Lagos State, Nigeria. The analysis was based on evaluating the planning techniques used among the firms and their effects on project cost and duration. The analysis was carried out using mean score and percentage.
DOI: 10.6084/m9.figshare.22299883
title: CODING RESIPIEN.xlsx

description: Recipent Coding
DOI: 10.6084/m9.figshare.22299883.v2
title: CODING RESIPIEN.xlsx

description: Recipent Coding
DOI: 10.6084/m9.figshare.22299883.v1
title: CODING RESIPIEN.xlsx

description: Recipent Coding
DOI: 10.6084/m9.figshare.22299886
title: CODING KONTROL.xlsx

description: Control Data
DOI: 10.6084/m9.figshare.22299886.v1
title: CODING KONTROL.xlsx

description: Control Data
DOI: 10.6084/m9.figshare.22299886.v2
title: CODING KONTROL.xlsx

description: Control Data
DOI: 10.5281/zenodo.1172512
title: Water and energy fluxes measurements over a riparian Tamarix spp. stand in the lower Tarim River basin, northwestern China

description: This dataset includes water and energy fluxes measurements over a riparian <em>Tamarix spp.</em> stand in the lower Tarim River basin, northwestern China. Details of field site and measurements can be found in the paper: Yuan, G., P. Zhang, M.-a. Shao, Y. Luo, and X. Zhu (2014), Energy and water exchanges over a riparian Tamarix spp. stand in the lower Tarim River basin under a hyper-arid climate, Agricultural and Forest Meteorology, 194(0), 144-154. This dataset also accompanies the published paper in the Water Resources Research: Implementing Dynamic Root Optimization in Noah‐MP for Simulating Phreatophytic Root Water Uptake. Water Resources Research 54(3), 1560-1575. With this dataset, we tested the Noah-MP land surface model with implementation of a soil moisture-responsive root dynamics scheme (VOM-ROOT).
description: {"references": ["Yuan, G., P. Zhang, M.-a. Shao, Y. Luo, and X. Zhu (2014), Energy and water exchanges over a riparian Tamarix spp. stand in the lower Tarim River basin under a hyper-arid climate, Agricultural and Forest Meteorology, 194(0), 144-154."]}
DOI: 10.5281/zenodo.1172511
title: Water and energy fluxes measurements over a riparian Tamarix spp. stand in the lower Tarim River basin, northwestern China

description: This dataset includes water and energy fluxes measurements over a riparian <em>Tamarix spp.</em> stand in the lower Tarim River basin, northwestern China. Details of field site and measurements can be found in the paper: Yuan, G., P. Zhang, M.-a. Shao, Y. Luo, and X. Zhu (2014), Energy and water exchanges over a riparian Tamarix spp. stand in the lower Tarim River basin under a hyper-arid climate, Agricultural and Forest Meteorology, 194(0), 144-154. This dataset also accompanies the published paper in the Water Resources Research: Implementing Dynamic Root Optimization in Noah‐MP for Simulating Phreatophytic Root Water Uptake. Water Resources Research 54(3), 1560-1575. With this dataset, we tested the Noah-MP land surface model with implementation of a soil moisture-responsive root dynamics scheme (VOM-ROOT).
description: {"references": ["Yuan, G., P. Zhang, M.-a. Shao, Y. Luo, and X. Zhu (2014), Energy and water exchanges over a riparian Tamarix spp. stand in the lower Tarim River basin under a hyper-arid climate, Agricultural and Forest Meteorology, 194(0), 144-154."]}
DOI: 10.25959/vt0g-5f70
title: The Petrogenesis of the East Tasmania Terrane Devonian Granites. Appendix 6.3 Geochemistry results, Appendix 6.4Hbl and Pl EMPA, Appendix 6.5 Lu-Hf SRMs and data.

description: Hogans Road diorite major and trace element geochemistry, hornblende and plagioclase mineral chemistry, and zircon Lu and Hf data.
DOI: 10.6084/m9.figshare.22351315
title: Coding of Reinfection

description: Coding of Reinfection
DOI: 10.6084/m9.figshare.22351315.v1
title: Coding of Reinfection

description: Coding of Reinfection
DOI: 10.25959/srtj-pd33
title: The Petrogenesis of the East Tasmania Terrane Devonian Granites. Appendix 5.1 Quartz O-isotopes SRM's and 5.3 Quartz Oxygen isotopes results

description: These appendices contain magmatic quartz O isotope results for standard reference materials and for isolates from Tasmanian Devonian granites. The measurements were made by sensitive high resolution ion microprobe at Research School of Earth Sciences at Australia National University
DOI: 10.25345/c5833n80m
title: MassIVE MSV000091580 - An electroaffinity labeling platform for chemoproteomic-based target identification
title: Target identification involves deconvoluting the protein target of a pharmacologically active small molecule ligand, which is critical for early drug discovery yet technically challenging. Photoaffinity labeling strategies have become the benchmark for small molecule target deconvolution, but covalent protein capture requires the use of high energy UV light, which can complicate downstream target identification. Thus, there is a strong demand for alternative technologies that allow for controlled activation of chemical probes to covalently label their protein target. Here, we introduce an electroaffinity labeling platform that leverages the use of a small, redox-active diazetidinone functional group to enable chemoproteomic-based target identification of pharmacophores within live cell environments. The underlying discovery to enable this platform is that the diazetidinone can be electrochemically oxidized to reveal reactive intermediate useful for covalent modification of proteins. This work, for the first time, demonstrates the electrochemical platform to be a functional tool for drug-target identification.
DOI: 10.21227/0nw3-5p06
title: Play willingness studies

description: While integrity and clarity of message are traditionally emphasized in advertising strategy, recent game advertisements have adopted an opposite approach, utilizing incomplete information in game videos to enhance play willingness. This study investigates the impact of missing information on play willingness and the contributing factors through three experiments. The study found that incomplete game videos more likely stimulated play willingness compared to complete videos. Additionally, missing information ignited a desire for a complete message, prompting the audience to reinforce the play willingness to fill the gaps. Lastly, the study identified the Need for Cognitive Closure (NFCC) as a moderating factor in the “information missing-curiosity drive” relationship. An individual’s tolerance for ambiguity and lack of information influences their play willingness.
DOI: 10.5281/zenodo.7779801
title: BPM_ethics

description: Dataset containing the explicit occurrences of terms associated with ethical or moral aspects in the publications of the BPM, ICPM and S-BPM ONE conferences, from their first editions to the 2022 editions
DOI: 10.5281/zenodo.7779800
title: BPM_ethics

description: Dataset containing the explicit occurrences of terms associated with ethical or moral aspects in the publications of the BPM, ICPM and S-BPM ONE conferences, from their first editions to the 2022 editions
DOI: 10.5517/ccdc.csd.cc2bdxym
title: CCDC 2157381: Experimental Crystal Structure Determination

description: Related Article: Haofan Yang, Chao Li, Tao Liu, Thomas Fellowes, Samantha Y. Chong, Luca Catalano, Mounib Bahri, Weiwei Zhang, Yongjie Xu, Lunjie Liu, Wei Zhao, Adrian M. Gardner, Rob Clowes, Nigel D. Browning, Xiaobo Li, Alexander J. Cowan, Andrew I. Cooper|2023|Nature Nanotechnology|18|307|doi:10.1038/s41565-022-01289-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bdy1r
title: CCDC 2157384: Experimental Crystal Structure Determination

description: Related Article: Haofan Yang, Chao Li, Tao Liu, Thomas Fellowes, Samantha Y. Chong, Luca Catalano, Mounib Bahri, Weiwei Zhang, Yongjie Xu, Lunjie Liu, Wei Zhao, Adrian M. Gardner, Rob Clowes, Nigel D. Browning, Xiaobo Li, Alexander J. Cowan, Andrew I. Cooper|2023|Nature Nanotechnology|18|307|doi:10.1038/s41565-022-01289-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.22348495.v1
title: Dataset.xlsx

description: The data is about rates of C stocks of plant and soil in response to grazing exclusion in global grasslands.
DOI: 10.5281/zenodo.7076314
title: Cable bacteria activity and impacts in Fe and Mn depleted carbonate sediments

description: raw data for paper "Cable bacteria activity and impacts in Fe and Mn depleted carbonate sediments"
DOI: 10.5281/zenodo.7076315
title: Cable bacteria activity and impacts in Fe and Mn depleted carbonate sediments

description: raw data for paper "Cable bacteria activity and impacts in Fe and Mn depleted carbonate sediments"
DOI: 10.5281/zenodo.7779808
title: Cable bacteria activity and impacts in Fe and Mn depleted carbonate sediments

description: raw data for paper "Cable bacteria activity and impacts in Fe and Mn depleted carbonate sediments"
DOI: 10.6084/m9.figshare.22348495.v2
title: Dataset.xlsx

description: The data is about rates of C stocks of plant and soil in response to grazing exclusion in global grasslands.
DOI: 10.6084/m9.figshare.22348495.v3
title: Dataset.xlsx

description: The data is about rates of C stocks of plant and soil in response to grazing exclusion in global grasslands.
DOI: 10.34845/pacs-cs.000006
title: Lattice QCD gauge ensemble: JLDG/PACS-CS/RCNF2+1/RC32x64_B1900Kud01378100Ks01364000C1715

description: Lattice QCD gauge ensemble: JLDG/PACS-CS/RCNF2+1/RC32x64_B1900Kud01378100Ks01364000C1715
DOI: 10.6084/m9.figshare.22262517.v2
title: Ethical use of artificial intelligence in health professions education: AMEE Guide No.158

description: Health Professions Education (HPE) has benefitted from the advances in Artificial Intelligence (AI) and is set to benefit more in the future. Just as any technological advance opens discussions about ethics, so the implications of AI for HPE ethics need to be identified, anticipated, and accommodated so that HPE can utilise AI without compromising crucial ethical principles. Rather than focussing on AI technology, this Guide focuses on the ethical issues likely to face HPE teachers and administrators as they encounter and use AI systems in their teaching environment. While many of the ethical principles may be familiar to readers in other contexts, they will be viewed in light of AI, and some unfamiliar issues will be introduced. They include data gathering, anonymity, privacy, consent, data ownership, security, bias, transparency, responsibility, autonomy, and beneficence. In the Guide, each topic explains the concept and its importance and gives some indication of how to cope with its complexities. Ideas are drawn from personal experience and the relevant literature. In most topics, further reading is suggested so that readers may further explore the concepts at their leisure. The aim is for HPE teachers and decision-makers at all levels to be alert to these issues and to take proactive action to be prepared to deal with the ethical problems and opportunities that AI usage presents to HPE.
DOI: 10.6084/m9.figshare.22262517.v1
title: Ethical use of artificial intelligence in health professions education: AMEE Guide No.158

description: Health Professions Education (HPE) has benefitted from the advances in Artificial Intelligence (AI) and is set to benefit more in the future. Just as any technological advance opens discussions about ethics, so the implications of AI for HPE ethics need to be identified, anticipated, and accommodated so that HPE can utilise AI without compromising crucial ethical principles. Rather than focussing on AI technology, this Guide focuses on the ethical issues likely to face HPE teachers and administrators as they encounter and use AI systems in their teaching environment. While many of the ethical principles may be familiar to readers in other contexts, they will be viewed in light of AI, and some unfamiliar issues will be introduced. They include data gathering, anonymity, privacy, consent, data ownership, security, bias, transparency, responsibility, autonomy, and beneficence. In the Guide, each topic explains the concept and its importance and gives some indication of how to cope with its complexities. Ideas are drawn from personal experience and the relevant literature. In most topics, further reading is suggested so that readers may further explore the concepts at their leisure. The aim is for HPE teachers and decision-makers at all levels to be alert to these issues and to take proactive action to be prepared to deal with the ethical problems and opportunities that AI usage presents to HPE.
DOI: 10.6084/m9.figshare.22346953
title: API-basedN-gramDS

description: 2-gram features based on API call sequence
DOI: 10.6084/m9.figshare.22346953.v2
title: API-basedN-gramDS

description: 2-gram features based on API call sequence
DOI: 10.6084/m9.figshare.22346953.v1
title: train_test_dataset_1.0v3m.csv

description: 60% of the total data which is used as training data it contain n-gram features that were extracted based on API calls and 40% of data is considered as testing data
DOI: 10.5519/qd.5qru2tzt
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5511291 records)
DOI: 10.6084/m9.figshare.22348495.v4
title: Dataset.xlsx

description: The data is about rates of C stocks of plant and soil in response to grazing exclusion in global grasslands.
DOI: 10.25582/data.2022-03.2465497/1931920
title: Data for EMSL Project 51568 from March 2022
DOI: 10.25582/data.2022-03.2465495/1931921
title: Data for EMSL Project 51568 from March 2022
DOI: 10.25582/data.2022-03.2465496/1932766
title: Data for EMSL Project 51568 from March 2022
DOI: 10.25582/data.2022-03.2465498/1932769
title: Data for EMSL Project 51568 from March 2022