cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17617/3.mm6djr
title: Data and plots for the paper "Impact of Greenland Ice Sheet disintegration on atmosphere and ocean disentangled"

description: This record contains data and scripts accompanying the paper: "Impact of Greenland Ice Sheet Disintegration on Atmosphere and Ocean Disentangled“ accepted in Earth System Dynamics (https://doi.org/10.5194/esd-2024-24).
DOI: 10.17617/3.aofcgy
title: Raw dataset on PII leakage via SSO logins measurement

description: This collection contains the raw dataset used to reproduce the analysis conducted in our study on PII leakage measurements via SSO logins.
DOI: 10.17617/3.fyttq8
title: Data and R Script related to "Tiled Material Systems: Exploring biodiversity and multi-functionality of a universal and structural motif"

description: Data table of collected examples related to tiles and tessellations in nature. These have been coded according to their structure and function. Alongside an R code used for data analyses of the table.
description: R, 4.2.0
DOI: 10.5281/zenodo.15364780
title: SuvetTag logger data used for testing microclimf microclimate model

description: Three datasets. 

1) Data form 8 SurveyTag loggers deployed in a meadow in northern Spain (43.5°N, 5.7°W) between April and July 2024, recording hourly temperatures c. 40 and 80 cm above ground. 

2) Data from 16 SurveyTag loggers deployed in unimproved grassland in Cornwall, United Kingdom (50.166°N, 5.273°W) between October and December 2024, recording hourly temperatures 5, 10, 50, and 100 cm above ground.

3) Data from 36 SurveyTag loggers deployed below forest canopy at five sites across southern England between March and October 2024, recording hourly temperatures 100 cm above ground.

Metadata, including laititude and longitude, vegetation and ground characteristics accompany each file. File formats and further details are explained in the Readme files associated with each dataset
DOI: 10.5281/zenodo.15364781
title: SuvetTag logger data used for testing microclimf microclimate model

description: Three datasets. 

1) Data form 8 SurveyTag loggers deployed in a meadow in northern Spain (43.5°N, 5.7°W) between April and July 2024, recording hourly temperatures c. 40 and 80 cm above ground. 

2) Data from 16 SurveyTag loggers deployed in unimproved grassland in Cornwall, United Kingdom (50.166°N, 5.273°W) between October and December 2024, recording hourly temperatures 5, 10, 50, and 100 cm above ground.

3) Data from 36 SurveyTag loggers deployed below forest canopy at five sites across southern England between March and October 2024, recording hourly temperatures 100 cm above ground.

Metadata, including laititude and longitude, vegetation and ground characteristics accompany each file. File formats and further details are explained in the Readme files associated with each dataset
DOI: 10.17617/3.bkgxqo
title: Disentangling real space fluctuations: the diagnostics of metal-insulator transitions beyond single-particle spectral functions

description: With this data set we provide all relevant raw data for the analyses provided in arXiv:2501.18325 via HDF5 files. The file names contain first the method (either CDMFT or the ISOLATED cluster), then the interaction value, the temperature, the doping or the chemical potential, the second next neighbor hopping and, finally, the size of the (impurity) cluster, either 1x1 or 2x2 follows. 1x1 indicates a single-site DMFT calculation.

Please use the following instructions for accessing the different types of data within the respective files:
1) For scalar quantities such as the filling "density" and the chemical potential "mu", the data is provided directly with this key.
2) For two-point fermionic objects such as the Green function "Greens_function", each entry contains two-orbital indices with keys running from 0 to 3 for the 2 times 2 cluster case. Then a key "data_Re" or "data_Im" follows. For example:
['Greens_function']['0']['0']['data_Re'] contains a 1D Matsubara data array.
3) Further, the Hedin vertex and the bosonic response functions are split into their channels: "char_ch" and "magn_ch", followed by
either "hedin" or "susceptibility"-keys. After two- or three-orbital keys "data_Re" or "data_Im" keys follow, before a respective array. For example: A['char_ch']['hedin'][str(i1)][str(i2)][str(i3)]['data_Re'] contains a 2D Matsubara data array, where the odd number of data is the values corresponding to bosonic frequencies for the positive and negative Matsubara frequencies, and the even number the respective fermionic argument.

The HDF5 files can, for instance, by access in python via https://www.h5py.org/.
DOI: 10.17617/3.9ihktd
title: GEQO biosensors for absolute analyte quantification in single cells - data and analysis

description: Data and analysis for the publication GEQO biosensors for absolute analyte quantification in single cells"
DOI: 10.17617/3.cotkcn
title: The Unusual Formaldehyde-induced Activation of [NiFe]-Hydrogenase: Implications from Protein Film Electrochemistry and Infrared Spectroscopy

description: Raw data associated with the manuscript titled: "The Unusual Formaldehyde-induced Activation of [NiFe]-Hydrogenase: Implications from Protein Film Electrochemistry and Infrared Spectroscopy" published in Bioelectrochemistry
DOI: 10.17617/3.rijiis
title: AlphaFold2 structural models of EcpK, EcpK/EpsV, octameric EcpK/EpsV483-507 in Myxococcus xanthus & HfsA/HfsB in Caulobacter crescentus

description: AlphaFold2 structural models of EcpK, EcpK/EpsV, octameric EcpK/EpsV483-507 in Myxococcus xanthus & HfsA/HfsB in Caulobacter crescentus.

For each prediction, the dataset includes five structural models along with the corresponding files for ranking scores, modeling configuration, and sequence alignment.
DOI: 10.17617/3.ipyqid
title: Data set: Momentum resolved fingerprint of Mottness in layer dimerized Nb3Br8

description: The dataset contains raw data files of the ARPES and optical absorption measurements. It also contains data files of the DFT bandstructure calculations.
DOI: 10.17617/3.mzvviz
title: AlphaFold2 structural models of MXAN1145, MXAN3211, MXAN4438, MXAN4739, MXAN5196 and SgnC (MXAN6627) in Myxococcus xanthus & LsiR, PilG, PixE and PixG in Synechocystis sp. PCC 6803.

description: AlphaFold2 structural models of MXAN1145, MXAN3211, MXAN4438, MXAN4739, MXAN5196, and SgnC (MXAN6627) in Myxococcus xanthus & LsiR, PilG, PixE and PixG in Synechocystis sp. PCC 6803. The dataset includes five structural models for each prediction and the corresponding files for ranking scores, modeling configuration, and sequence alignment.
DOI: 10.17617/3.7f5mge
title: Example videos for multi-object tracking

description: This repository contains video data used both for the development of the TRex (https://trex.run/) tracking software and for teaching its use.
&lt;br&gt;
The filenames use the convention project_YYYYMMDD_N
&lt;br&gt;
Where:
&lt;br&gt;
- project stands for the project name (&lt;i&gt;e.g.&lt;/i&gt; hexbug). In the locusts video set, the suffix after the dash (-noqr, -qr, -mix) indicates whether individuals are tagged with Aruco markers.
&lt;br&gt;
- N stands for the number of filmed individuals
&lt;br&gt;
&lt;br&gt;
Video Set 1: guppies
&lt;br&gt;
1. guppy_20200727_8.mp4
This is a video of 6:40 minutes of 8 guppies (&lt;i&gt;Poecilia reticulata&lt;/i&gt;). The video was originally recorded at 30 frames per second but the playback in this file is set to 25 frames per second.
&lt;br&gt;
&lt;br&gt;
Video Set 2: hexbugs
&lt;br&gt;
2. hexbug_20250129_5.mp4
This is a video of 2:47 minutes of 5 hexbugs. The video was originally recorded at 50 frames per second but the playback in this file is set to 30 frames per second.
&lt;br&gt;
&lt;br&gt;
Video Set 3: locusts
&lt;br&gt;
3. locusts-noqr_20250117_5.mp4
This is a video of 1:35 minutes of 5 locusts (&lt;i&gt;Schistocerca gregaria&lt;/i&gt;). The video was originally recorded at 5 frames per second but the playback in this file is set to 30 frames per second. Locusts were not tagged with an aruco marker.
&lt;br&gt;
4. locusts-noqr_20250117_15.mp4
This is a video of 2:32 minutes of 15 locusts (&lt;i&gt;Schistocerca gregaria&lt;/i&gt;). The video was originally recorded at 5 frames per second but the playback in this file is set to 30 frames per second. Locusts were not tagged with an aruco marker.
&lt;br&gt;
5. locusts-noqr_20250206_5.mp4
This is a video of 3:32 minutes of 5 locusts (&lt;i&gt;Schistocerca gregaria&lt;/i&gt;). The video was originally recorded at 5 frames per second but the playback in this file is set to 25 frames per second. Locusts were not tagged with an aruco marker.
&lt;br&gt;
6. locusts-mix_20250206_10.mp4
This is a video of 3:07 minutes of 10 locusts (&lt;i&gt;Schistocerca gregaria&lt;/i&gt;). The video was originally recorded at 5 frames per second but the playback in this file is set to 25 frames per second. Five out of ten locusts were tagged with an aruco marker.
&lt;br&gt;
7. locusts-qr_20250206_15.mp4
This is a video of 3:00 minutes of 15 locusts (&lt;i&gt;Schistocerca gregaria&lt;/i&gt;). The video was originally recorded at 5 frames per second but the playback in this file is set to 25 frames per second. All locusts were tagged with an aruco marker.
&lt;br&gt;
&lt;br&gt;
The videos were collected in the facilities of the Department of Collective Behavior at the Max Planck Institute of Animal Behavior and the Centre for the Advanced Study of Collective Behaviour (CASCB) at the University of Konstanz. Konstanz, Germany.
&lt;br&gt;
For more details, please read the ACKNOWLEDGMENTS and METHODS files.
DOI: 10.17617/3.xd6uew
title: Code and data to reproduce "Temporal dynamics and policy implications in an innovation arms race"

description: This repository contains the underlying data and code to reproduce the manuscript "Temporal dynamics and policy implications in an innovation arms race". The repository contains the following data sources: 
1) anonymized observational data of bin protections used by residents in a suburb of Sydney Australia from 2023 and 2024,
2) observational data of bin-opening behavior by colour-marked sulphur crested cockatoos,
3) an experimental assay of cockatoos' knowledge states regarding bin opening and bin protection,
4) simulated data from a spatially explicit agent based model of an innovation arms race.

We have provided R code to reproduce all tables and figures from the study, as well as Python code to run the agent based model. For more details, please see the readme.md file.
DOI: 10.21233/a9sm-ma36
title: Gallanech Beg pollen dataset

description: Raw data for the Gallanech Beg pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.ka5mm2
title: The SPFH complex HflK-HflC regulates aerobic respiration in bacteria

description: Linear model of protein degradation used to perform proteome-wide protein stability analysis in the publication “The SPFH complex HflK-HflC regulates aerobic respiration in bacteria”.
DOI: 10.17617/3.e8xgcn
title: Phase Coexistence in Nonreciprocal Quorum-Sensing Active Matter

description: This repository contains representative data supplementing the manuscript "Phase Coexistence in Nonreciprocal Quorum-Sensing Active Matter" from Y. Duan et al.
DOI: 10.15468/dl.rm48vp
title: Occurrence Download

description: A dataset containing 2218 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stachyurus praecox Siebold & Zucc.",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2218 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021511-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17617/3.hnzwvw
title: Data: bulk soil Δδ15N uptake through free-living nitrogen fixation (FLNF) and microbial lipid intensities in temperate grassland soils from a river floodplain in Jena/GER

description: The dataset includes environmental parameters, 15N2 uptake in to the bulk soil by free-living N2 fixers, information on identified lipids and summed lipid intensities analysed in our 15N2 soil incubation study.
DOI: 10.17617/3.mbwrwg
title: IMHD-dataset-RHOBIN challenge

description: Packed data of IMHD (CVPR'24) for the RHOBIN challenge.
DOI: 10.17617/3.waor7h
title: Multiple glutathione-S-transferases detoxify diverse glucosinolate-based defenses in a generalist lepidopteran herbivore

description: The study provides insights into the detoxification mechanisms employed by Spodoptera littoralis to counteract glucosinolate-derived isothiocyanates (ITCs) from Brassicales plants. The findings demonstrate the versatility of glutathione-S-transferases (GSTs) in metabolizing a diverse range of ITCs, highlighting the biochemical flexibility of this generalist herbivore. The evidence that multiple GSTs exhibit broad substrate specificity and are constitutively expressed across various larval tissues supports the hypothesis that this detoxification system facilitates dietary adaptation. Moreover, the observed relationship between GST activity and larval performance underscores the ecological relevance of this mechanism in overcoming plant chemical defenses.
DOI: 10.17617/3.x57wax
title: movies for "Joy's law on the Sun can be explained by the Coriolis force acting on near-surface horizontal flows during flux emergence"

description: Movies of flux emergence for the paper: Joy's law on the Sun can be explained by the Coriolis force acting on near-surface horizontal flows during flux emergence
DOI: 10.17617/3.l5f0q2
title: Data for Field-resolved Attosecond Solitons

description: This is the data supporting Amelie Heinzerling et al., Field-resolved Attosecond Solitons, Nature Photonics (further details to be determined)
DOI: 10.17617/3.uzsfcw
title: Phylogenetic data for "Structure of the ATP driven Methyl coenzyme M reductase activation complex "

description: Alignments and phylogenetic trees
DOI: 10.17617/3.fuoj2y
title: Dataset of Oviposition experience affects oviposition preference in Drosophila melanogaster

description: Show the data used for all the figures in the already published paper
DOI: 10.15468/dl.pehry6
title: Occurrence Download

description: A dataset containing 9825 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Morchella esculenta (L.) Pers.)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Geometry POLYGON ((-20 20, -20 75, 45 75, 45 20, -20 20))"
 ]
}

 The dataset includes 9825 records from 200 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021512-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/538q-0k21
title: Grächen See pollen dataset

description: Raw data for the Grächen See pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/vfa2-ya12
title: UNGAVA1 pollen surface sample dataset

description: Raw data for the UNGAVA1 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.glivdu
title: Quantification of lipid sorting during clathrin-mediated endocytosis data and codes

description: Data and codes for the paper with the titel "Quantification of lipid sorting during clathrin-mediated endocytosis ", abstract: Clathrin-mediated endocytosis is a major transport route for proteins from the plasma membrane to the interior of the cell. While the recruitment of cargo proteins to clathrin-coated pits is well understood, it remains an open question if lipid species are also sorted by this process. To address this question, we combined super-resolution STED imaging of bifunctional lipid probes with mathematical modeling. Quantification of 10 different lipid species revealed significant differences in pit partitioning, ranging from slight enrichment to moderate exclusion. Pit partitioning of lipid species strongly correlates with lipid asymmetry in the plasma membrane, and modeling suggests that the known leaflet asymmetry of lipid species is sufficient to explain the observed trend. Taken together, our findings imply that clathrin-mediated endocytosis has a minor selectivity for cytoplasmic leaflet lipids, but overall does not significantly contribute to lipid sorting compared to non-vesicular trafficking. More broadly, we believe that lipid super-resolution imaging will be a powerful approach to quantify lipid partitioning into membrane structures in cells.
DOI: 10.17617/3.idd7fc
title: Coiba Capuchin Agouti Scoring Instructions

description: This is a description of the scoring instructions and ethogram for Coiba capuchin camera trap images scored in Agouti. To be used for referring to in publications.
DOI: 10.15468/dl.u2pgme
title: Occurrence Download

description: A dataset listing the 130125 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-115.40753 -9.55635,-37.59247 -9.55635,-37.59247 21.55635,-115.40753 21.55635,-115.40753 -9.55635))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 130125 records were derived from 3943 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021505-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.533jr5
title: Occurrence Download

description: A dataset containing 602932 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Nepal",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2000-2023"
 ]
}

 The dataset includes 602932 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001883-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ufsa49
title: Occurrence Download

description: A dataset containing 2951 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Rhinopomastus aterrimus (Stephens, 1826)"
 ]
}

 The dataset includes 2951 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030848-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.46bshb
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Arctocephalus galapagoensis Heller, 1904"
 ]
}

 The dataset includes 224 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174791-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ctmt5w
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurea horrida Badarò"
 ]
}

 The dataset includes 106 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129491-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.45qfmz
title: Occurrence Download

description: A dataset containing 342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "TaxonKey is Oncosiphon pilulifer (L.fil.) Källersjö"
 ]
}

 The dataset includes 342 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030857-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5grc5t
title: Occurrence Download

description: A dataset containing 1928 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pelecanoides magellani (Mathews, 1912))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1928 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005883-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8gpvu7
title: Occurrence Download

description: A dataset containing 423 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.43_1",
 "TaxonKey is Aquilegia canadensis L."
 ]
}

 The dataset includes 423 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129493-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jecnpa
title: Occurrence Download

description: A dataset containing 274 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dimorphanthera dekockii J.J.Sm."
 ]
}

 The dataset includes 274 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030851-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2db3e5
title: Occurrence Download

description: A dataset containing 2127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Monticola rufocinereus (Rüppell, 1837))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2127 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299459-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mw87fp
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allophryne relicta Caramaschi, Orrico, Faivovich, Dias & Solé, 2013"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129507-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.