cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15468844
title: FIShBOT Archive 2025-05-20

description: This dataset is a static snapshot of the FIShBOT data product before new data are aggregated. This version of fishbot is archived for reproducibility and is not updated. The data are aggregated from the FIShBOT system, which collects and processes oceanographic from fishery dependent and independent sources.
DOI: 10.5281/zenodo.15468845
title: FIShBOT Archive 2025-05-20

description: This dataset is a static snapshot of the FIShBOT data product before new data are aggregated. This version of fishbot is archived for reproducibility and is not updated. The data are aggregated from the FIShBOT system, which collects and processes oceanographic from fishery dependent and independent sources.
DOI: 10.15468/dl.ndctdn
title: Occurrence Download

description: A dataset containing 2431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Spain",
 "Geometry POLYGON((-4.53957 36.69674,-4.55159 36.68134,-4.55508 36.67861,-4.56852 36.67653,-4.58121 36.68213,-4.59858 36.68061,-4.60276 36.68059,-4.6067 36.6756,-4.60026 36.67783,-4.59047 36.67563,-4.58453 36.67857,-4.5803 36.67501,-4.57234 36.67236,-4.56497 36.67234,-4.55063 36.67597,-4.54641 36.68359,-4.53747 36.69086,-4.53503 36.69681,-4.53957 36.69674))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2431 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012575-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zqrrp3
title: Occurrence Download

description: A dataset containing 6830 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aerva Forssk."
 ]
}

 The dataset includes 6830 records from 176 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012576-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eayxt7
title: Occurrence Download

description: A dataset containing 7261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (North America, South America)",
 "TaxonKey is Turpinia"
 ]
}

 The dataset includes 7261 records from 271 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000309-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4fkpyu
title: Occurrence Download

description: A dataset containing 21380 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Loxodonta africana",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 }
 ]
}

 The dataset includes 21380 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000310-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdj6g6
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Drymocallis rupestris, Potentilla rupestris, Potentilla rupestris, Potentilla rupestris, Potentilla rupestris, Potentilla rupestris)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 16 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000313-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18303773
title: Rhynchosia hauthalii (Kuntze) Grear. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.5281/zenodo.18303772
title: Rhynchosia hauthalii (Kuntze) Grear. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.15468/dl.3cdm5r
title: Occurrence Download

description: A dataset containing 19875 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sternopygidae"
 ]
}

 The dataset includes 19875 records from 226 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000312-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2pdyd4
title: Occurrence Download

description: A dataset listing the 188 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "Geometry POLYGON((-74.051 4.72314,-74.05038 4.72654,-74.0499 4.72958,-74.04956 4.73263,-74.04761 4.74436,-74.04711 4.74788,-74.0522 4.74889,-74.05993 4.74977,-74.06509 4.75075,-74.06477 4.74793,-74.06525 4.74265,-74.066 4.73742,-74.0669 4.73397,-74.06864 4.72972,-74.0644 4.72803,-74.051 4.72314))",
 "Year 2020-2025"
 ]
 }
 ]
}

 The dataset's 188 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000298-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34810/data2918
title: ConversasDB

description: The database was created as part of the CONVERSAS project, which investigates Christian women of Jewish and Muslim origin (Conversas and Moriscas, respectively) in the premodern Crown of Aragon. This research was funded by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Actions grant agreement No. 101104439. The dataset provides structured information on all women documented in inquisitorial sources from Catalonia (c. 1487–1505) who were identified as Conversas by inquisitorial authorities, including both women who were the subjects of proceedings and those referenced in the cases of others. Each record represents a documentary attestation and is linked through stable person identifiers, enabling the reconstruction of individual life trajectories, family networks, and patterns of inquisitorial action.
DOI: 10.7931/dl1-coll37-1
title: Bacterial and nematode parasites of soil insects
DOI: 10.7931/dl1-coll37-5
title: Bernard Dyer's citric-acid-extraction method
DOI: 10.15468/dl.uny4bd
title: Occurrence Download

description: A dataset containing 1002 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Echinochloa crus-galli, Echinochloa crus-gallii, Panicum crus-galli)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 1002 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000315-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r9mk5t
title: Occurrence Download

description: A dataset containing 287633 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Saudi Arabia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2015-2026"
 ]
}

 The dataset includes 287633 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000243-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15864839
title: Supporting Files (Part 4) for "The Influence of Wave Events on Open Water Suspended Sediment Fluxes on the Alaskan Beaufort Sea Shelf: A Numerical Modeling Study"

description: Overview

These files include Part 4 of the ROMS model input files that were used to create the figures in the following paper:

"The Influence of Wave Events on Open Water Suspended Sediment Fluxes on the Alaskan Beaufort Sea Shelf: A Numerical Modeling Study"

by Brianna Undzis, Julia M. Moriarty, Emily F. Eidam, Irina Overeem

which is published in JGR Oceans. 

Input Files

Model input files for the model described in the peer-reviewed publication:



Boundary & Climatology Files: 



v_currents_bry_002.nc
DOI: 10.5281/zenodo.15864840
title: Supporting Files (Part 4) for "The Influence of Wave Events on Open Water Suspended Sediment Fluxes on the Alaskan Beaufort Sea Shelf: A Numerical Modeling Study"

description: Overview

These files include Part 4 of the ROMS model input files that were used to create the figures in the following paper:

"The Influence of Wave Events on Open Water Suspended Sediment Fluxes on the Alaskan Beaufort Sea Shelf: A Numerical Modeling Study"

by Brianna Undzis, Julia M. Moriarty, Emily F. Eidam, Irina Overeem

which is published in JGR Oceans. 

Input Files

Model input files for the model described in the peer-reviewed publication:



Boundary & Climatology Files: 



v_currents_bry_002.nc
DOI: 10.5281/zenodo.18303797
title: Rhynchosia edulis Griseb. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.5281/zenodo.18303799
title: Rhynchosia edulis Griseb. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.15468/dl.eg5adm
title: Occurrence Download

description: A dataset containing 305 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Material sample, Material citation, Specimen, Fossil, Living Specimen, Occurrence evidence, Human Observation)",
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Melanoides tuberculata"
 ]
}

 The dataset includes 305 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000317-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18303608
title: Spatiotemporal occurrence of northern bottlenose whales (Hyperoodon ampullatus) within the Nordic Seas based upon passive acoustic monitoring

description: Dataset and R code corresponding to the following publication:Haas, C.E., Miller, P.J.O., Hooker, S.K., Svavarsson, J., Macrander, A., Lam, F.P.A., Wensveen, P.J. Spatiotemporal occurrence of northern bottlenose whales (Hyperoodon ampullatus) within the Nordic Seas based upon passive acoustic monitoring. Marine Biology (2026). https://doi.org/10.1007/s00227-026-04798-6
DOI: 10.5281/zenodo.18303609
title: Spatiotemporal occurrence of northern bottlenose whales (Hyperoodon ampullatus) within the Nordic Seas based upon passive acoustic monitoring

description: Dataset and R code corresponding to the following publication:Haas, C.E., Miller, P.J.O., Hooker, S.K., Svavarsson, J., Macrander, A., Lam, F.P.A., Wensveen, P.J. Spatiotemporal occurrence of northern bottlenose whales (Hyperoodon ampullatus) within the Nordic Seas based upon passive acoustic monitoring. Marine Biology (2026). https://doi.org/10.1007/s00227-026-04798-6
DOI: 10.15468/dl.xcdv94
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eleocharis palustris, Eleocharis palustris, Eleocharis palustris, Eleocharis palustris, Scirpus palustris)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 94 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000318-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15864620
title: Supporting Files (Part 3) for "The Influence of Wave Events on Open Water Suspended Sediment Fluxes on the Alaskan Beaufort Sea Shelf: A Numerical Modeling Study"

description: Overview

These files include Part 3 of the ROMS model input files that were used to create the figures in the following paper:

"The Influence of Wave Events on Open Water Suspended Sediment Fluxes on the Alaskan Beaufort Sea Shelf: A Numerical Modeling Study"

by Brianna Undzis, Julia M. Moriarty, Emily F. Eidam, Irina Overeem

which is published in JGR Oceans. 

Input Files

Model input files for the model described in the peer-reviewed publication:



Boundary & Climatology Files: 



u_currents_clm_001.nc

u_currents_bry_001.nc

v_currents_clm_002_fix02.nc
DOI: 10.5281/zenodo.15864621
title: Supporting Files (Part 3) for "The Influence of Wave Events on Open Water Suspended Sediment Fluxes on the Alaskan Beaufort Sea Shelf: A Numerical Modeling Study"

description: Overview

These files include Part 3 of the ROMS model input files that were used to create the figures in the following paper:

"The Influence of Wave Events on Open Water Suspended Sediment Fluxes on the Alaskan Beaufort Sea Shelf: A Numerical Modeling Study"

by Brianna Undzis, Julia M. Moriarty, Emily F. Eidam, Irina Overeem

which is published in JGR Oceans. 

Input Files

Model input files for the model described in the peer-reviewed publication:



Boundary & Climatology Files: 



u_currents_clm_001.nc

u_currents_bry_001.nc

v_currents_clm_002_fix02.nc
DOI: 10.5281/zenodo.18303810
title: Rhynchosia minima (L.) DC. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.15468/dl.28xb59
title: Occurrence Download

description: A dataset containing 457 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "TaxonKey is Abies pinsapo"
 ]
}

 The dataset includes 457 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000319-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18303809
title: Rhynchosia minima (L.) DC. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.15468/dl.zjxd3s
title: Occurrence Download

description: A dataset containing 8250 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHE.23.2.4_1",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset includes 8250 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000320-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18303696
title: Search strategies fora scoping review of the current decision-making pathways and oversight structures for reimbursement of high-risk medical devices in the EU/EEA and the UK

description: The dataset includes the complete, reproducible search strategies for all bibliographic databases searched during this project. The search strategies were designed to answer the following research question:

What are the key pathways (e.g., hospital-based reimbursement, national reimbursement), stages of decision-making, and oversight structures involved in reimbursing high-risk devices in the EU/EEA and the UK?
DOI: 10.5281/zenodo.18303697
title: Search strategies fora scoping review of the current decision-making pathways and oversight structures for reimbursement of high-risk medical devices in the EU/EEA and the UK

description: The dataset includes the complete, reproducible search strategies for all bibliographic databases searched during this project. The search strategies were designed to answer the following research question:

What are the key pathways (e.g., hospital-based reimbursement, national reimbursement), stages of decision-making, and oversight structures involved in reimbursing high-risk devices in the EU/EEA and the UK?
DOI: 10.15468/dl.2s9c68
title: Occurrence Download

description: A dataset containing 321160 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Squalus acanthias"
 ]
}

 The dataset includes 321160 records from 293 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000279-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m2fvdk
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pleuropasta reticulata"
 ]
}

 The dataset includes 63 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000321-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18303813
title: Rhynchosia pallida Micheli. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.5281/zenodo.18303814
title: Rhynchosia pallida Micheli. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.15468/dl.rhgy67
title: Occurrence Download

description: A dataset containing 19647146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is one of (Spodoptera frugiperda, Busseola fusca, Chilo partellus, Sesamia calamistis, Heteronychus arator, Schistocerca gregaria, Prostephanus truncatus, Agrotis ipsilon, Rhopalosiphum maidis, Helicoverpa armigera, Cicadulina mbila, Macrotermes herus, Odontotermes badius, Ploceus cucullatus, Sitophilus zeamais, Maize chlorotic mottle virus, Sugarcane mosaic virus, Maize dwarf mosaic virus, Ustilago maydis, Sphacelotheca reiliana, Exserohilum turcicum, Cercospora zeae-maydis, Puccinia sorghi, Peronosclerospora sorghi, Bipolaris maydis, Fusarium verticillioides, Fusarium proliferatum, Aspergillus flavus, Aspergillus parasiticus, Stenocarpella maydis, Ascomycota, Striga hermonthica, Digitaria abyssinica scalarum, Oxalis latifolia, Cenchrus ciliaris, Cyperus rotundus, Commelina benghalensis, Cynodon nlemfuensis, Bidens pilosa, Galinsoga parviflora, Amaranthus hybridus, Pennisetum clandestinum)",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2026"
 ]
}

 The dataset includes 19647146 records from 4869 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000277-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/f0b996fef22d56cacd87f60f5dea2cd9
title: Average Epilimnetic Conductivity from 1992 to present in Tooli Lake, Arctic LTER, Alaska.

description: Average conductivity of the epilimnion (0-3m of water depth) found in Toolik Lake during the month of July.
DOI: 10.5281/zenodo.12775616
title: Standardized Framework and Quantitative Benchmarking: Nuclear Segmentation platforms for Multiplexed Immunofluorescence data in Translational Studies

description: Paired nuclear ground truth annotated binary masks and segmentation binary masks predicted from different segmentation platforms can be found in external.zip and inhouse.zip. internal.zip was used for development of the nuclear segmentation evaluation pipeline while external.zip hosts data that was/can be used for benchmarking of nuclear segmentation performance for multiplexed immunofluorescence workflows in translational studies. external.zip contains ground-truth annotated binary masks from another dataset in synapse (https://doi.org/10.7303/SYN27624812). README_DAPI.md contains information about where to locate the raw DAPI nuclear intensities used by the different segmentation platforms to predict nuclei.

The naming convention of the ROIs used is as follows: "Sample ID_ULHC" where ULHC refers to the coordinates of the upper-left hand corner pixel of the ROI within the whole sample field, delimited by an underscore ("_"). E.g. For ROI "Bph2_45174_14597_160_246": "Bph2_45174_14597" is the sample ID and (246,160) is the ULHC pixel.

 

Citing

Please cite these sources if you use this data



Sankaranarayanan, A., Khachaturov, G., Smythe, K.S. & Mittal, S. Quantitative benchmarking of nuclear segmentation algorithms in multiplexed immunofluorescence imaging for translational studies. Commun Biol 8, 836 (2025). https://doi.org/10.1038/s42003-025-08184-8

Sankaranarayanan, A., Khachaturov, G., Smythe, K. S. & Mittal, S. Standardized framework and quantitative benchmarking: nuclear segmentation platforms for multiplexed immunofluorescence data in translational studies. Zenodo (2024). https://doi.org/10.5281/zenodo.12775616