cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/inscriptifact-ouc110872600
title: Persepolis Fortification Anepigraphic Tablet 0417.202, PFAnep 0417.202

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0417.202, PFUT 0417-202 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse, reverse. ❧ [Physical Object Note:] Damage on bottom edge, upper edge. Right side of tablet broken off. Some cracks on reverse.
DOI: 10.25549/inscriptifact-ouc110872599
title: Persepolis Fortification Anepigraphic Tablet 0417.202, PFAnep 0417.202

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0417.202, PFUT 0417-202 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse, reverse. ❧ [Physical Object Note:] Damage on bottom edge, upper edge. Right side of tablet broken off. Some cracks on reverse.
DOI: 10.15468/dl.2mb9s3
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-87.7533418000000012 41.9145188999999974, -87.7533418000000012 41.9147026199999999, -87.7533418000000012 41.9151159899999968, -87.7533418000000012 41.9154604699999993, -87.7533418000000012 41.9158049400000010, -87.7533418000000012 41.9164249999999967, -87.7533418000000012 41.9168153999999973, -87.7528827000000007 41.9168153999999973, -87.7525154399999963 41.9168153999999973, -87.7522170299999971 41.9168153999999973, -87.7516890800000056 41.9168153999999973, -87.7510463600000037 41.9168153999999973, -87.7506331900000021 41.9168153999999973, -87.7501740999999953 41.9168153999999973, -87.7497838799999954 41.9168153999999973, -87.7491411599999935 41.9168153999999973, -87.7487279799999982 41.9168153999999973, -87.7481311699999935 41.9168153999999973, -87.7476032200000020 41.9168153999999973, -87.7472130000000021 41.9168153999999973, -87.7466161899999975 41.9168153999999973, -87.7462029999999942 41.9168153999999973, -87.7462029999999942 41.9162412700000004, -87.7462029999999942 41.9158279099999973, -87.7462029999999942 41.9152997099999993, -87.7462029999999942 41.9148863400000025, -87.7462029999999942 41.9145188999999974, -87.7468227800000022 41.9145188999999974, -87.7472359500000039 41.9145188999999974, -87.7477638999999954 41.9145188999999974, -87.7481770800000049 41.9145188999999974, -87.7485902500000066 41.9145188999999974, -87.7489804800000002 41.9145188999999974, -87.7494395599999990 41.9145188999999974, -87.7498986500000058 41.9145188999999974, -87.7505184099999980 41.9145188999999974, -87.7509086400000058 41.9145188999999974, -87.7512758999999960 41.9145188999999974, -87.7517809000000000 41.9145188999999974, -87.7521252100000027 41.9145188999999974, -87.7526302100000066 41.9145188999999974, -87.7530204300000065 41.9145188999999974, -87.7533418000000012 41.9145188999999974))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097345-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111327497
title: Codex Climaci Rescriptus: Ladder of Ascent by John Climacus, MS.000149.1-.86

description: [Text Description:] Codex Climaci Rescriptus: Syriac translation of Ladder of Divine Ascent by John Climacus, upper text ❧ [Text or Publication Number Note:] MS.000149.1-.86 ❧ [Excavation Description:] Found at St. Catherine's Monastery ❧ [Medium:] Parchment ❧ [Script Note:] Syriac ❧ [Physical Object Description:] 137 folios; 9.06 x 14.56 in. (23 x 37 cm); vellum with ink ❧ [Physical Object Note:] Palimpsest
DOI: 10.15468/dl.kppcma
title: Occurrence Download

description: A dataset containing 10073 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lurocalis semitorquatus (J.F.Gmelin, 1789)"
 ]
}

 The dataset includes 10073 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0131324-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111327499
title: Codex Climaci Rescriptus: Ladder of Ascent by John Climacus, MS.000149.1-.86

description: [Text Description:] Codex Climaci Rescriptus: Syriac translation of Ladder of Divine Ascent by John Climacus, upper text ❧ [Text or Publication Number Note:] MS.000149.1-.86 ❧ [Excavation Description:] Found at St. Catherine's Monastery ❧ [Medium:] Parchment ❧ [Script Note:] Syriac ❧ [Physical Object Description:] 137 folios; 9.06 x 14.56 in. (23 x 37 cm); vellum with ink ❧ [Physical Object Note:] Palimpsest
DOI: 10.25549/inscriptifact-ouc111327775
title: Codex Climaci Rescriptus: Ladder of Ascent by John Climacus, MS.000149.1-.86

description: [Text Description:] Codex Climaci Rescriptus: Syriac translation of Ladder of Divine Ascent by John Climacus, upper text ❧ [Text or Publication Number Note:] MS.000149.1-.86 ❧ [Excavation Description:] Found at St. Catherine's Monastery ❧ [Medium:] Parchment ❧ [Script Note:] Syriac ❧ [Physical Object Description:] 137 folios; 9.06 x 14.56 in. (23 x 37 cm); vellum with ink ❧ [Physical Object Note:] Palimpsest
DOI: 10.15468/dl.5bgudc
title: Occurrence Download

description: A dataset containing 16952 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "Country is Afghanistan",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 16952 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009822-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111327777
title: Codex Climaci Rescriptus: Ladder of Ascent by John Climacus, MS.000149.1-.86

description: [Text Description:] Codex Climaci Rescriptus: Syriac translation of Ladder of Divine Ascent by John Climacus, upper text ❧ [Text or Publication Number Note:] MS.000149.1-.86 ❧ [Excavation Description:] Found at St. Catherine's Monastery ❧ [Medium:] Parchment ❧ [Script Note:] Syriac ❧ [Physical Object Description:] 137 folios; 9.06 x 14.56 in. (23 x 37 cm); vellum with ink ❧ [Physical Object Note:] Palimpsest
DOI: 10.25549/inscriptifact-ouc112024357
title: Cuneiform Tablet 1913.14.1506, Spurlock 1913.14.1506

description: [Text Description:] Account concerning silver, barley, and refined bitumen ❧ [Text or Publication Number Note:] Spurlock 1913.14.1506; CDLI P421358 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/2) Light Brown (5YR 6.5/4) Dark Gray (N 3/ 6.6% R) ❧ [Physical Object Note:] 10.1 x 6.9 x 2.9 cm (213g)
DOI: 10.15468/dl.krhtzn
title: Occurrence Download

description: A dataset containing 449 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is MARINe/PISCO: Intertidal: MARINe Long-Term Monitoring Surveys: Sea Stars and Katharina",
 "TaxonKey is Pycnopodia helianthoides (Brandt, 1835)"
 ]
}

 The dataset includes 449 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0131333-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112024358
title: Cuneiform Tablet 1913.14.1506, Spurlock 1913.14.1506

description: [Text Description:] Account concerning silver, barley, and refined bitumen ❧ [Text or Publication Number Note:] Spurlock 1913.14.1506; CDLI P421358 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/2) Light Brown (5YR 6.5/4) Dark Gray (N 3/ 6.6% R) ❧ [Physical Object Note:] 10.1 x 6.9 x 2.9 cm (213g)
DOI: 10.25549/inscriptifact-ouc112024379
title: Cuneiform Tablet 1913.14.1506, Spurlock 1913.14.1506

description: [Text Description:] Account concerning silver, barley, and refined bitumen ❧ [Text or Publication Number Note:] Spurlock 1913.14.1506; CDLI P421358 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/2) Light Brown (5YR 6.5/4) Dark Gray (N 3/ 6.6% R) ❧ [Physical Object Note:] 10.1 x 6.9 x 2.9 cm (213g)
DOI: 10.15468/dl.1thym0
title: Occurrence Download

description: A dataset containing 1366 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Graphium antiphates (Cramer, 1775)"
 ]
}

 The dataset includes 1366 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021634-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xra75q
title: Occurrence Download

description: A dataset containing 3711 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Aloysia virgata (Ruiz & Pav.) Juss.)"
 ]
}

 The dataset includes 3711 records from 177 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007192-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13023/2024.alum.168
title: Lettuce

description: Includes data on the aluminum content of lettuce
DOI: 10.15468/dl.hrw3gd
title: Occurrence Download

description: A dataset containing 24201 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Brazil, Argentina, Paraguay)",
 "TaxonKey is Phaethornis eurynome (R.Lesson, 1832)",
 "Year 1000-2024"
 ]
}

 The dataset includes 24201 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007194-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfzjud
title: Occurrence Download

description: A dataset containing 41748 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Brazil, Argentina, Paraguay)",
 "TaxonKey is Phaethornis pretrei (R.Lesson & Delattre, 1839)",
 "Year 1000-2024"
 ]
}

 The dataset includes 41748 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007193-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t48asg
title: Occurrence Download

description: A dataset containing 28782 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alouatta Lacépède, 1799"
 ]
}

 The dataset includes 28782 records from 388 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007252-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yp39er
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ovophis monticola (Günther, 1864)"
 ]
}

 The dataset includes 135 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007254-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.um3hdw
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Androsace vitaliana subsp. praetutiana (Sünd.) Kress",
 "Year 1960-2025"
 ]
}

 The dataset includes 23 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007195-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yzuhvt
title: Occurrence Download

description: A dataset containing 507 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is one of (Argentina, Falkland Islands (Malvinas), South Georgia and the South Sandwich Islands)",
 {
 "and" : [
 "Country is one of (Argentina, Falkland Islands (Malvinas), South Georgia and the South Sandwich Islands)",
 "HasGeospatialIssue is false"
 ]
 },
 "Geometry POLYGON((-74 -60, -25 -60, -25 -90, -74 -90, -74 -60))"
 ]
 },
 "TaxonKey is one of (Butia (Becc.) Becc.)"
 ]
}

 The dataset includes 507 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007256-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrn2pr
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Academy of Natural Sciences of Philadelphia Invertebrate Paleontology Collection",
 "Issue is Taxon match fuzzy"
 ]
}

 The dataset includes 43 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007257-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13023/2024.alum.96
title: Nuts and Seeds

description: Includes data on the aluminum content of nuts and seeds
DOI: 10.6073/pasta/3158f09791be214f492552d4a820ab99
title: North Temperate Lakes LTER: Light Extinction 1981 - current

description: A light (PAR) extinction coefficient is calculated for the water column for the eleven primary lakes (Allequash, Big Muskellunge, Crystal, Sparkling, Trout, Crystal Bog, Trout Bog, Mendota, Monona, Wingra, and Fish) and two additional lakes near Madison, Wisconsin (Waubesa and Kegonsa). Data exists only for the Trout Lake-area lakes through 2018. Beginning in 2019, the Madison-area lakes were added. The fraction of surface light is computed at 0.25-m to 1-m depth intervals depending on the lake. The light (PAR) extinction coefficient is calculated by regressing ln(fraction of light(z)) on depth z. Sampling Frequency: fortnightly during ice-free season - every 6 weeks during ice-covered season Number of sites: 13.
 The raw light data can be found in two other datasets: 
 https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-ntl&identifier=29 & 
 https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-ntl&identifier=401
DOI: 10.15468/dl.px96ve
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anthemis aetnensis Schouw",
 "Year 1960-2025"
 ]
}

 The dataset includes 86 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007258-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13023/2024.alum.62
title: Cake

description: Includes data on the aluminum content of cake
DOI: 10.15468/dl.arkwby
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Stelis dimidia (Luer) Karremans"
 ]
}

 The dataset includes 18 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007198-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rv2z5u
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "StateProvince is one of (Vermont, New York, Maine, New Hampshire)",
 "TaxonKey is Micranthes foliolosa (R.Br.) Gornall"
 ]
}

 The dataset includes 19 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007199-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14903324
title: Design and Computational Evaluation of Tubulin-Targeting PROTACs for Brain Cancer Therapy

description: Official repository of the data, scripts and structures employed in and produced during the work presented in "Design and Computational Evaluation of Tubulin-Targeting PROTACs for Brain Cancer Therapy". 

The content of the repository is organized as follows:



Starting ligands databases:



Database_colchicine.zip : employed colchicine analogs in mol, pdb, mol2, and moe database format.

Database_combretastatin.zip : employed combretastatin derivatives in mol, pdb, and moe database format. 

Database_ExperimentalStructures.zip : experimental compounds in mol, pdb, mol2, and moe database format.






Tubulin homology models:



Tubulin_Models_1SA0.zip : fasta sequences, homology models, bound ligands, molecular dynamics input and output files, and clustering results for each of the 8 tubulin dimers considered in the study.






Docking:



Docking_vina_colchicine.zip : Vina config files, compounds pdbqt, and docking results for colchicine analogs dataset.

Docking_1SA0.zip : config files, compounds pdb and pdbqt, and docking results for all the ligands dataset used, for both AutoDock and MOE.






ADMET predictions:



ADMET.zip : Simulations Plus' ADMET Predictor results for colchicine analogs, combretastatins, and experimental compounds datasets.






MMPBSA:



MMPBSA.zip : input and output files for molecular dynamics, clustering, and rmsd of the tubulin dimers containing tubulin beta III and VI, and the UBR1 structure. MMPBSA calculations for tubulin beta III and VI in complex with selected ligands.






PROTAC structures:



 PROTACs.zip : structures of the PROTACs designed from each of the seven most promising tubulin-binding ligands. Data provided in ChemDraw, mol, mol2, and moe database format.






PROTAC-mediated ternary structure prediction in MOE:



Ternary_Complex_Prediction.zip : moe output files and databases of the PROTAC-mediated ternary complexes, obtained via docking simulations in MOE.

Ternary_Complex_Prediction_Best.zip : moe databases for the best PROTACs and the most reliable ternary complexes, extracted from the docking data stored in Ternary_Complex_Prediction.zip.
DOI: 10.5281/zenodo.14903325
title: Design and Computational Evaluation of Tubulin-Targeting PROTACs for Brain Cancer Therapy

description: Official repository of the data, scripts and structures employed in and produced during the work presented in "Design and Computational Evaluation of Tubulin-Targeting PROTACs for Brain Cancer Therapy". 

The content of the repository is organized as follows:



Starting ligands databases:



Database_colchicine.zip : employed colchicine analogs in mol, pdb, mol2, and moe database format.

Database_combretastatin.zip : employed combretastatin derivatives in mol, pdb, and moe database format. 

Database_ExperimentalStructures.zip : experimental compounds in mol, pdb, mol2, and moe database format.






Tubulin homology models:



Tubulin_Models.zip : fasta sequences, homology models, bound ligands, molecular dynamics input and output files, and clustering results for each of the 8 tubulin dimers considered in the study.






Docking:



Docking_vina_colchicine.zip : vina config files, compounds pdbqt, and docking results for colchicine analogs dataset.

Docking_vina_combretastatin.zip : vina config files, compounds pdbqt, and docking results for combretastatins dataset. [To be uploaded]

Docking_vina_exp.zip : vina config files, compounds pdbqt, and docking results for experimental compounds dataset. [To be uploaded]






ADMET predictions:



ADMET.zip : Simulations Plus' ADMET Predictor results for colchicine analogs, combretastatins, and experimental compounds datasets.






MMPBSA:



MMPBSA.zip : input and output files for molecular dynamics, clustering, and rmsd of the tubulin dimers containing tubulin beta III and VI, and the UBR1 structure. MMPBSA calculations for tubulin beta III and VI in complex with selected ligands.






PROTAC structures:



 PROTACs.zip : structures of the PROTACs designed from each of the seven most promising tubulin-binding ligands. Data provided in ChemDraw, mol, mol2, and moe database format.






PROTAC-mediated ternary structure prediction in MOE:



Ternary_Complex_Prediction.zip : moe output files and databases of the PROTAC-mediated ternary complexes, obtained via docking simulations in MOE.

Ternary_Complex_Prediction_Best.zip : moe databases for the best PROTACs and the most reliable ternary complexes, extracted from the docking data stored in Ternary_Complex_Prediction.zip.