cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7yzign
title: Occurrence Download

description: A dataset containing 312026 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Euplectes orix (Linnaeus, 1758)",
 "TaxonKey is Euplectes orix nigrifrons (Bohm, 1884)",
 "TaxonKey is Euplectes orix turgidus Clancey, 1958",
 "TaxonKey is Euplectes orix sundevalli Bonaparte, 1850",
 "TaxonKey is Euplectes orix orix"
 ]
}

 The dataset includes 312026 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000738-170925132151566/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dazt3s
title: Occurrence Download

description: A dataset containing 112400 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Cacatua sanguinea Gould, 1843",
 "TaxonKey is Cacatua sanguinea transfreta Mees, 1982",
 "TaxonKey is Cacatua sanguinea westralensis (Mathews, 1917)",
 "TaxonKey is Cacatua sanguinea gymnopis P.L.Sclater, 1871",
 "TaxonKey is Cacatua sanguinea sanguinea",
 "TaxonKey is Cacatua sanguinea normantoni (Mathews, 1917)"
 ]
}

 The dataset includes 112400 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011115-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id403614.1
title: StrainInfo SI-ID 403614.1

description: StrainInfo dataset 403614 about a strain of Muribaculum gordoncarteri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id403615.1
title: StrainInfo SI-ID 403615.1

description: StrainInfo dataset 403615 about a strain of Talaromyces funiculosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id403632.1
title: StrainInfo SI-ID 403632.1

description: StrainInfo dataset 403632 about a strain of Leptolyngbya. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id403633.1
title: StrainInfo SI-ID 403633.1

description: StrainInfo dataset 403633 about a strain of Desulfoluna spongiiphila. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id403634.1
title: StrainInfo SI-ID 403634.1

description: StrainInfo dataset 403634 about a strain of Eggerthella lenta. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id403635.1
title: StrainInfo SI-ID 403635.1

description: StrainInfo dataset 403635 about a strain of Streptococcus loxodontisalivarius. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id403730.1
title: StrainInfo SI-ID 403730.1

description: StrainInfo dataset 403730 about a strain of Leucobacter musarum subsp. musarum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id403731.1
title: StrainInfo SI-ID 403731.1

description: StrainInfo dataset 403731 about a strain of Sanguibacter. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.n83vge
title: Occurrence Download

description: A dataset containing 8949 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gnaphalium luteoalbum L."
 ]
}

 The dataset includes 8949 records from 184 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002276-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id403732.1
title: StrainInfo SI-ID 403732.1

description: StrainInfo dataset 403732 about a strain of Peribacillus kribbensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.mo7hjy
title: Occurrence Download

description: A dataset containing 9181 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Acridotheres cristatellus (Linnaeus, 1758)",
 "TaxonKey is Acridotheres cristatellus brevipennis Hartert, 1910",
 "TaxonKey is Acridotheres cristatellus cristatellus",
 "TaxonKey is Acridotheres cristatellus formosanus (Hartert, 1912)"
 ]
}

 The dataset includes 9181 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009553-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id403616.1
title: StrainInfo SI-ID 403616.1

description: StrainInfo dataset 403616 about a strain of Microbacterium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id403617.1
title: StrainInfo SI-ID 403617.1

description: StrainInfo dataset 403617 about a strain of Amycolatopsis regifaucium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.gkjdlm
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euplectes aureus (Gmelin, 1789)"
 ]
}

 The dataset includes 116 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000730-170925132151566/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id403618.1
title: StrainInfo SI-ID 403618.1

description: StrainInfo dataset 403618 about a strain of Microcella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id403636.1
title: StrainInfo SI-ID 403636.1

description: StrainInfo dataset 403636 about a strain of Schinkia oryziterrae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.htqxmy
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crax blumenbachii Spix, 1825"
 ]
}

 The dataset includes 114 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000594-170925132151566/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id403637.1
title: StrainInfo SI-ID 403637.1

description: StrainInfo dataset 403637 about a strain of Vibrio. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id403638.1
title: StrainInfo SI-ID 403638.1

description: StrainInfo dataset 403638 about a strain of Marinobacter santoriniensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id403639.1
title: StrainInfo SI-ID 403639.1

description: StrainInfo dataset 403639 about a strain of Oceanitalea stevensii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.exssti
title: Occurrence Download

description: A dataset containing 2843 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Euplectes hordeaceus (Linnaeus, 1758)",
 "TaxonKey is Euplectes hordeaceus craspedopterus Bonaparte, 1850",
 "TaxonKey is Euplectes hordeaceus hordeaceus"
 ]
}

 The dataset includes 2843 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000734-170925132151566/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id403733.1
title: StrainInfo SI-ID 403733.1

description: StrainInfo dataset 403733 about a strain of Dermabacter. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.jfy7sp
title: Occurrence Download

description: A dataset containing 18199 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liocranidae"
 ]
}

 The dataset includes 18199 records from 303 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036779-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h2dn3q
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Rhus wilsonii"
 ]
}

 The dataset includes 66 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000514-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cnuhvq
title: Occurrence Download

description: A dataset containing 544 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriocnemis nigrivestis"
 ]
}

 The dataset includes 544 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000515-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7x89zm
title: Occurrence Download

description: A dataset containing 1416 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salix fragilis",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1416 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000516-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15348115
title: BrainWeb Training Data, Pre-Trained Model and Cartesian Brain Ultra-Low Field MR Data for the Spatially-Adaptive TV Example in MRpro

description: This dataset contains the following:



A set of 2500 images (brainweb_data.pt) generated from the BrainWeb dataset [Aubert-Broche et al, IEEE TMI 2006] using an inversion recovery signal model from MRpro. 

A set of pre-trained weights (tv_model.pt) of a network to estimate spatially adaptive regularization parameter weights to be used in the total variation (TV)-minmization example in MRpro. The network was trained on 2250 of the images above, using 100 images for validation and leaving 150 for testing purposes.

A small subset (training_images_part.pt, validation_images_part.pt, test_images_part.pt - 16, 8 and 10 images, respectively) of randomly selected images that were used for training, validation and testing of the network mentioned above. These are the images that are used in the notebook example of MRpro in order to avoid to download all 2500 images.

A brain MR scan of a healthy volunteer obtained with an OSI2 ONE ultra-low field scanner (https://www.opensourceimaging.org/project/osii-one).


For further details, please have a look at the examples of MRpro (https://github.com/PTB-MR/mrpro).
DOI: 10.5281/zenodo.15863926
title: BrainWeb Training Data, Pre-Trained Model and Cartesian Brain Ultra-Low Field MR Data for the Spatially-Adaptive TV Example in MRpro

description: This dataset contains the following:



A set of 2500 images (brainweb_data.pt) generated from the BrainWeb dataset [Aubert-Broche et al, IEEE TMI 2006] using an inversion recovery signal model from MRpro. 

A set of pre-trained weights (tv_model.pt) of a network to estimate spatially adaptive regularization parameter weights to be used in the total variation (TV)-minmization example in MRpro. The network was trained on 2250 of the images above, using 100 images for validation and leaving 150 for testing purposes.

A small subset (training_images_part.pt, validation_images_part.pt, test_images_part.pt - 16, 8 and 10 images, respectively) of randomly selected images that were used for training, validation and testing of the network mentioned above. These are the images that are used in the notebook example of MRpro in order to avoid to download all 2500 images.

A brain MR scan of a healthy volunteer obtained with an OSI2 ONE ultra-low field scanner (https://www.opensourceimaging.org/project/osii-one).


For further details, please have a look at the examples of MRpro (https://github.com/PTB-MR/mrpro).
DOI: 10.15468/dl.jxhphp
title: Occurrence Download

description: A dataset containing 14608 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((7.21216 44.1582,7.34369 44.15923,7.34784 44.2395,7.21009 44.2395,7.21216 44.1582))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 14608 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000517-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnpmqj
title: Occurrence Download

description: A dataset containing 2407 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tapirus pinchaque"
 ]
}

 The dataset includes 2407 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000518-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.petpng
title: Occurrence Download

description: A dataset containing 75236 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Anthus cervinus)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 75236 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000489-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15864063
title: Supplementary Material for Radiocarbon dataset for the upper and middle slope of Santos Basin (Southwest Atlantic)

description: Radiocarbon data
DOI: 10.5281/zenodo.15864064
title: Supplementary Material for Radiocarbon dataset for the upper and middle slope of Santos Basin (Southwest Atlantic)

description: Radiocarbon data
DOI: 10.6084/m9.figshare.29521145
title: Restoring Plant Diversity on Mining Slopes of the Loess Plateau: Effects of Artificial Soil and Slope Characteristics on Ecological Rehabilitation

description: Mining activities have extensively degraded slope ecosystems on the Loess Plateau, presenting significant ecological and geological challenges. This study introduces an innovative ecological restoration method utilizing external-soil spray seeding technologyto improve soil structure and promote vegetation recovery on mining slopes, effectively addressing the challenges posed by harsh geological conditions that impede restoration. We aimed to elucidate how artificial soil application and slope characteristics influence plant diversity on restored mining slopes, providing effective management strategies for ecological rehabilitation.
DOI: 10.6084/m9.figshare.29521145.v1
title: Restoring Plant Diversity on Mining Slopes of the Loess Plateau: Effects of Artificial Soil and Slope Characteristics on Ecological Rehabilitation

description: Mining activities have extensively degraded slope ecosystems on the Loess Plateau, presenting significant ecological and geological challenges. This study introduces an innovative ecological restoration method utilizing external-soil spray seeding technologyto improve soil structure and promote vegetation recovery on mining slopes, effectively addressing the challenges posed by harsh geological conditions that impede restoration. We aimed to elucidate how artificial soil application and slope characteristics influence plant diversity on restored mining slopes, providing effective management strategies for ecological rehabilitation.
DOI: 10.5281/zenodo.15799025
title: Molecular Dynamics Simulations of Amyloid-β Peptides and Cu(II) Complex at a Biomimetic Water/Dichloroethane Interface

description: This dataset contains the molecular dynamics (MD) input, parameter, and trajectory files for three systems:

1. Aβ₁₋₁₆ at the water/DCE interface with all counterions and tetrabutylborate (TB⁻)2. Aβ₄₋₁₆ at the water/DCE interface with all counterions and TB⁻3. Aβ₄₋₁₆–Cu(II) complex at the water/DCE interface with all counterions and TB⁻

The simulations were conducted using GROMACS 2020.6 with the CHARMM36m force field, modified to include parameters for the organic anion TB⁻ (BATB) and cation BA+ (BTPPA) and other counterions, as well as the DCE organic phase. All peptide systems were simulated at pH 5 using appropriate protonation states.

Systems Provided (3 total)





Aβ₁₋₁₆ at the water/DCE interface (with TB⁻)





Folder: Abeta_1_16




Contains structure (ab_1_16.pdb), full force field parameters (charmm36m_added.ff/), topology (topol.top), minimized configuration (min_nopbc.gro), trajectory (md_dt200.xtc), and position restraints (posre.itp).






Aβ₄₋₁₆ at the water/DCE interface (with TB⁻)





Folder: Abeta_4_16




Contains structure (ab_4_16.pdb), same charmm36m force field, and corresponding .top, .gro, .xtc, and .itp files.






Aβ₄₋₁₆–Cu(II) complex at the water/DCE interface (with TB⁻)





Folder: Abeta_4_16_Cu




Includes ab_4_16_cu.pdb with the Cu(II)-coordinated peptide, the modified force field, full system topology, and trajectory.





Each system includes the full charmm36m_added.ff/ directory to ensure reproducibility. This contains .itp and .gro files for water models, organic ions, and all non-bonded and bonded parameters used.

All structure, parameter, and trajectory files are provided to ensure full reproducibility.




File
Description




.pdb
Initial peptide structure with protonation states


.top
Topology file referencing all force field components


.itp
Include files for molecule definitions and restraints


.gro
Coordinates of solvated systems after minimization


.xtc
MD trajectory files (100 ns)


charmm36m_added.ff/
Complete force field directory with added DCE and organic ion parameters
DOI: 10.5281/zenodo.15799024
title: Molecular Dynamics Simulations of Amyloid-β Peptides and Cu(II) Complex at a Biomimetic Water/Dichloroethane Interface

description: This dataset contains the molecular dynamics (MD) input, parameter, and trajectory files for three systems:

1. Aβ₁₋₁₆ at the water/DCE interface with all counterions and tetrabutylborate (TB⁻)2. Aβ₄₋₁₆ at the water/DCE interface with all counterions and TB⁻3. Aβ₄₋₁₆–Cu(II) complex at the water/DCE interface with all counterions and TB⁻

The simulations were conducted using GROMACS 2020.6 with the CHARMM36m force field, modified to include parameters for the organic anion TB⁻ (BATB) and cation BA+ (BTPPA) and other counterions, as well as the DCE organic phase. All peptide systems were simulated at pH 5 using appropriate protonation states.

Systems Provided (3 total)





Aβ₁₋₁₆ at the water/DCE interface (with TB⁻)





Folder: Abeta_1_16




Contains structure (ab_1_16.pdb), full force field parameters (charmm36m_added.ff/), topology (topol.top), minimized configuration (min_nopbc.gro), trajectory (md_dt200.xtc), and position restraints (posre.itp).






Aβ₄₋₁₆ at the water/DCE interface (with TB⁻)





Folder: Abeta_4_16




Contains structure (ab_4_16.pdb), same charmm36m force field, and corresponding .top, .gro, .xtc, and .itp files.






Aβ₄₋₁₆–Cu(II) complex at the water/DCE interface (with TB⁻)





Folder: Abeta_4_16_Cu




Includes ab_4_16_cu.pdb with the Cu(II)-coordinated peptide, the modified force field, full system topology, and trajectory.





Each system includes the full charmm36m_added.ff/ directory to ensure reproducibility. This contains .itp and .gro files for water models, organic ions, and all non-bonded and bonded parameters used.

All structure, parameter, and trajectory files are provided to ensure full reproducibility.




File
Description




.pdb
Initial peptide structure with protonation states


.top
Topology file referencing all force field components


.itp
Include files for molecule definitions and restraints


.gro
Coordinates of solvated systems after minimization


.xtc
MD trajectory files (100 ns)


charmm36m_added.ff/
Complete force field directory with added DCE and organic ion parameters
DOI: 10.15468/dl.hvvfzy
title: Occurrence Download

description: A dataset containing 376 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gerbillus campestris"
 ]
}

 The dataset includes 376 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000519-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.