cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20154389.v1
title: 840–820 Ma Dahongshan bimodal volcanic rocks: new constraints on the Neoproterozoic arc–back-arc basin system along the northern margin of the Yangtze Block

description: The newly identified earliest part of the Sanligang bimodal volcanic succession in the Dahongshan area of the northern Yangtze Block provides insight into the role of this block in the evolution of the Rodinia supercontinent. Field contact relationships and dating indicate that these rocks are contemporaneous and formed at 840–820 Ma. The Sanligang mafic rocks have low SiO<sub>2</sub> (40.33–48.17 wt.%) and K<sub>2</sub>O (0.07–1.65 wt.%), high TiO<sub>2</sub> (2.64–3.52 wt.%) contents, and low U/Th (0.33–0.38), Th/Zr (0.001–0.002), and Nb/Y (0.059–0.064) ratios with positive ε<sub>Nd</sub>(t) (+5.08 to +7.59). This suggests that they are formed from magmas derived from an asthenospheric mantle source that had not been modified by slab-derived materials, with a low degree of crustal contamination during their eruption. Contemporaneous felsic rocks in the study area have high SiO<sub>2</sub> (73.1–80.0 wt.%), variable K<sub>2</sub>O (0.63–4.39 wt.%) and Na<sub>2</sub>O (1.73–6.54 wt.%), and low MgO (0.1–0.58 wt.%) contents and are light rare earth element enriched, with (La/Yb)<sub>N</sub> values of 1.37–2.65 and significantly negative Eu anomalies. They have A<sub>2</sub>-type granite affinities, as evidenced by their high 10,000 Ga/Al values (3.51–4.55) and Zr contents (285–620 ppm), and positive whole-rock ε<sub>Nd</sub>(t) (+6.16–+6.52), zircon ε<sub>Hf</sub>(t) (+9.69–+12.29) and δ<sup>18</sup>O (+4.82–+6.11) values, suggesting they formed by partial melting of juvenile crustal material caused by heating associated with contemporaneous mantle-derived mafic magmatism. Combining the data for these bimodal volcanic successions with other rock assemblages in the Dahongshan area indicates that this magmatism occurred in a back-arc extensional setting. This magmatism was caused by slab detachment and separation along a vertical tear during the Neoproterozoic evolution of the arc to arc–back-arc system of the northern margin of the Yangtze Block.
DOI: 10.6084/m9.figshare.20154221.v1
title: Additional file 3 of Characteristics and interplay of esophageal microbiota in esophageal squamous cell carcinoma

description: Additional file 3: Table S1. The relative abundance of 955 features in ESCC tumor and tumor-adjacent tissues.
DOI: 10.6084/m9.figshare.12654995.v1
title: Additional file 5 of Molecular evolution of the ATP-binding cassette subfamily G member 2 gene subfamily and its paralogs in birds

description: Additional file 5. Consensus sequences of the group specific motifs.
DOI: 10.6084/m9.figshare.12814507.v1
title: Additional file 2 of Profiling of miRNAs in porcine Sertoli cells

description: Additional file 2. List of differentially expressed miRNAs.
DOI: 10.6084/m9.figshare.6534131
title: New Tests for Equality of Several Covariance Functions for Functional Data

description: In this article, we propose two new tests for the equality of the covariance functions of several functional populations, namely, a quasi-GPF test and a quasi-<i>F</i><sub>max </sub> test whose test statistics are obtained via globalizing a pointwise quasi-<i>F</i>-test statistic with integration and taking its supremum over some time interval of interest, respectively. Unlike several existing tests, they are scale-invariant in the sense that their test statistics will not change if we multiply each of the observed functions by any nonzero function of time. We derive the asymptotic random expressions of the two tests under the null hypothesis and show that under some mild conditions, the asymptotic null distribution of the quasi-GPF test is a chi-squared-type mixture whose distribution can be well approximated by a simple-scaled chi-squared distribution. We also propose a random permutation method for approximating the null distributions of the quasi-GPF and <i>F</i><sub>max </sub> tests. The asymptotic distributions of the two tests under a local alternative are also investigated and the two tests are shown to be root-<i>n</i> consistent. A theoretical power comparison between the quasi-GPF test and the <i>L</i><sup>2</sup>-norm-based test proposed in the literature is also given. Simulation studies are presented to demonstrate the finite-sample performance of the new tests against five existing tests. An illustrative example is also presented. Supplementary materials for this article are available online.
DOI: 10.5281/zenodo.4348382
title: Aberrant development of pancreatic beta cells derived from human iPSCs with FOXA2 deficiency

description: Induced pluripotent stem cells (iPSCs) were generated from a patient with FOXA2 haploinsufficiency (FOXA2+/-iPSCs) as well as healthy individual as a control. Then they were differentiated into into all stages of beta cells to understand the role of FOXA2 during pancreatic beta cell development as described in the article entitled "Aberrant development of pancreatic beta cells derived from human iPSCs with FOXA2 deficiency" by Elsayed AK et al. The dataset represent RNA-seq data generated from pancreatic progenitors (PP2) and endocrine progenitors (EP) derived from control iPSCs (Ctr-iPSCs) and from patient-specific FOXA2 haplo-insufficient iPSCs (FOXA2+/-iPSCs). 


The file name is : Sample name with replicate_overall sample number_read direction_001 where:


- PP2-Ctr R1 and PP2-Ctr R2: Pancreatic progenitors derived from Ctr-iPSCs (control)


-PP2-FOX R1, PP2-FOX R2 and PP2-FOX R3: Pancreatic progenitors derived from FOXA2 haplo-insufficient iPSCs (FOXA2+/-iPSCs).


- EP-Ctr R1 and EP-Ctr R2: Endocrine progenitors derived from Ctr-iPSCs (control)


-EP-FOX R1, EP-FOX R2 and EP-FOX R3: Endocrine progenitors derived from FOXA2 haplo-insufficient iPSCs (FOXA2+/-iPSCs).


- RNA-seq data was generated from two biological replicates in control and three replicates in patient. 


- Read direction: R1 (Forward), R2 (Reverse).
DOI: 10.5281/zenodo.4348383
title: Aberrant development of pancreatic beta cells derived from human iPSCs with FOXA2 deficiency

description: Induced pluripotent stem cells (iPSCs) were generated from a patient with FOXA2 haploinsufficiency (FOXA2+/-iPSCs) as well as healthy individual as a control. Then they were differentiated into into all stages of beta cells to understand the role of FOXA2 during pancreatic beta cell development as described in the article entitled "Aberrant development of pancreatic beta cells derived from human iPSCs with FOXA2 deficiency" by Elsayed AK et al. The dataset represent RNA-seq data generated from pancreatic progenitors (PP2) and endocrine progenitors (EP) derived from control iPSCs (Ctr-iPSCs) and from patient-specific FOXA2 haplo-insufficient iPSCs (FOXA2+/-iPSCs). 


The file name is : Sample name with replicate_overall sample number_read direction_001 where:


- PP2-Ctr R1 and PP2-Ctr R2: Pancreatic progenitors derived from Ctr-iPSCs (control)


-PP2-FOX R1, PP2-FOX R2 and PP2-FOX R3: Pancreatic progenitors derived from FOXA2 haplo-insufficient iPSCs (FOXA2+/-iPSCs).


- EP-Ctr R1 and EP-Ctr R2: Endocrine progenitors derived from Ctr-iPSCs (control)


-EP-FOX R1, EP-FOX R2 and EP-FOX R3: Endocrine progenitors derived from FOXA2 haplo-insufficient iPSCs (FOXA2+/-iPSCs).


- RNA-seq data was generated from two biological replicates in control and three replicates in patient. 


- Read direction: R1 (Forward), R2 (Reverse).
DOI: 10.6084/m9.figshare.6534131.v2
title: New Tests for Equality of Several Covariance Functions for Functional Data

description: In this article, we propose two new tests for the equality of the covariance functions of several functional populations, namely, a quasi-GPF test and a quasi-<i>F</i><sub>max </sub> test whose test statistics are obtained via globalizing a pointwise quasi-<i>F</i>-test statistic with integration and taking its supremum over some time interval of interest, respectively. Unlike several existing tests, they are scale-invariant in the sense that their test statistics will not change if we multiply each of the observed functions by any nonzero function of time. We derive the asymptotic random expressions of the two tests under the null hypothesis and show that under some mild conditions, the asymptotic null distribution of the quasi-GPF test is a chi-squared-type mixture whose distribution can be well approximated by a simple-scaled chi-squared distribution. We also propose a random permutation method for approximating the null distributions of the quasi-GPF and <i>F</i><sub>max </sub> tests. The asymptotic distributions of the two tests under a local alternative are also investigated and the two tests are shown to be root-<i>n</i> consistent. A theoretical power comparison between the quasi-GPF test and the <i>L</i><sup>2</sup>-norm-based test proposed in the literature is also given. Simulation studies are presented to demonstrate the finite-sample performance of the new tests against five existing tests. An illustrative example is also presented. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.12814513.v1
title: Additional file 4 of Profiling of miRNAs in porcine Sertoli cells

description: Additional file 4. List of SC enriched miRNA targets.
DOI: 10.6084/m9.figshare.14379602.v1
title: Additional file 3 of Behavioral sensitization induced by methamphetamine causes differential alterations in gene expression and histone acetylation of the prefrontal cortex in rats

description: Additional file 3: Table S3. The detailed information of top 10 GO terms and the categorized differential expression genes in the group of METH-METH vs. NS-METH, METH-METH vs. NS-NS, and NS-METH vs. NS-NS.
DOI: 10.6084/m9.figshare.19106042
title: Additional file 3 of Response and resilience of anammox consortia to nutrient starvation

description: Additional file 2.
DOI: 10.6084/m9.figshare.6534131.v3
title: New Tests for Equality of Several Covariance Functions for Functional Data

description: In this article, we propose two new tests for the equality of the covariance functions of several functional populations, namely, a quasi-GPF test and a quasi-<i>F</i><sub>max </sub> test whose test statistics are obtained via globalizing a pointwise quasi-<i>F</i>-test statistic with integration and taking its supremum over some time interval of interest, respectively. Unlike several existing tests, they are scale-invariant in the sense that their test statistics will not change if we multiply each of the observed functions by any nonzero function of time. We derive the asymptotic random expressions of the two tests under the null hypothesis and show that under some mild conditions, the asymptotic null distribution of the quasi-GPF test is a chi-squared-type mixture whose distribution can be well approximated by a simple-scaled chi-squared distribution. We also propose a random permutation method for approximating the null distributions of the quasi-GPF and <i>F</i><sub>max </sub> tests. The asymptotic distributions of the two tests under a local alternative are also investigated and the two tests are shown to be root-<i>n</i> consistent. A theoretical power comparison between the quasi-GPF test and the <i>L</i><sup>2</sup>-norm-based test proposed in the literature is also given. Simulation studies are presented to demonstrate the finite-sample performance of the new tests against five existing tests. An illustrative example is also presented. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.21203292
title: Additional file 3 of TNFAIP6 defines the MSC subpopulation with enhanced immune suppression activities

description: Additional file 3: qPCR primer sequences.
DOI: 10.6084/m9.figshare.21203298
title: Additional file 5 of TNFAIP6 defines the MSC subpopulation with enhanced immune suppression activities

description: Additional file 5: Down-regulated genes in MSC vs non-MSC (FC &gt; -2).
DOI: 10.6084/m9.figshare.19106155.v1
title: Additional file 5 of Comparative metabolomic analysis reveals shared and unique chemical interactions in sponge holobionts

description: Additional file 4: Table S2. Pairwise PERMANOVA analysis based of Euclidian distances of normalized relative abundance of MFs of the LC-MS/MS dataset (including 24 ST and 20 MC samples). Bonferroni correction is used to correct for multiple test.
DOI: 10.6084/m9.figshare.14379599
title: Additional file 2 of Behavioral sensitization induced by methamphetamine causes differential alterations in gene expression and histone acetylation of the prefrontal cortex in rats

description: Additional file 2: Table S2. Raw data of mRNA microarray in METH-induced behavioral sensitization.
DOI: 10.6084/m9.figshare.19106170
title: Additional file 9 of Comparative metabolomic analysis reveals shared and unique chemical interactions in sponge holobionts

description: Additional file 8: Appendix file 3. Differential abundance analysis of metabolites.
DOI: 10.6084/m9.figshare.14379599.v1
title: Additional file 2 of Behavioral sensitization induced by methamphetamine causes differential alterations in gene expression and histone acetylation of the prefrontal cortex in rats

description: Additional file 2: Table S2. Raw data of mRNA microarray in METH-induced behavioral sensitization.
DOI: 10.6084/m9.figshare.21203325
title: Additional file 5 of A homozygous PIWIL2 frameshift variant affects the formation and maintenance of human-induced pluripotent stem cell-derived spermatogonial stem cells and causes Sertoli cell-only syndrome

description: Additional file 5: Table S4. DEGs between control and PIWIL2-/- hiPSCs.
DOI: 10.6084/m9.figshare.14379654.v1
title: Additional file 5 of FISH landmarks reflecting meiotic recombination and structural alterations of chromosomes in wheat (Triticum aestivum L.)

description: Additional file 5: Table S1. Oligonucleotide probes used for ND-FISH assays in this study.
DOI: 10.6084/m9.figshare.22262788
title: Raw XCT data of rock

description: The raw XCT scanning rock data composing of cracks, coal, gangue and pyrite
DOI: 10.5281/zenodo.10657959
title: Data inputs and main results

description: This dataset provides essential information necessary for conducting simulations and calculations to derive the primary results presented in the manuscript. It includes the outcomes of Total Water Level assessments under various scenarios of sea level and seagrass presence at all examined beaches and ports. Additionally, the dataset encompasses the Return Levels acquired and discussed in detail within the manuscript.
DOI: 10.5281/zenodo.10657960
title: Data inputs and main results

description: This dataset provides essential information necessary for conducting simulations and calculations to derive the primary results presented in the manuscript. It includes the outcomes of Total Water Level assessments under various scenarios of sea level and seagrass presence at all examined beaches and ports. Additionally, the dataset encompasses the Return Levels acquired and discussed in detail within the manuscript.
DOI: 10.6084/m9.figshare.14903921.v1
title: Additional file 1 of Differential gene expression identifies a transcriptional regulatory network involving ER-alpha and PITX1 in invasive epithelial ovarian cancer

description: Additional file 1.
DOI: 10.6084/m9.figshare.25074674
title: Anatomical organization of the cerebrum of the praying mantis <i>Hierodula membranacea</i>

description: We provide additional material for our publication entitled 'Anatomical organization of the cerebrum of the praying mantis <i>Hierodula membranacea</i>'. This lablefield dataset presents a three-dimensional reconstruction of the central brain of the Asian mantis, <i>Hierodula membranacea.</i> In total, we reconstructed 42 neuropils, some with further subdivisions. The reconstruction is based on a synapsin immunolabeled wholemount brain preparation. Scans can be accessed using software AMIRA 6.5.
DOI: 10.6084/m9.figshare.25074674.v1
title: Anatomical organization of the cerebrum of the praying mantis <i>Hierodula membranacea</i>

description: We provide additional material for our publication entitled 'Anatomical organization of the cerebrum of the praying mantis <i>Hierodula membranacea</i>'. This lablefield dataset presents a three-dimensional reconstruction of the central brain of the Asian mantis, <i>Hierodula membranacea.</i> In total, we reconstructed 42 neuropils, some with further subdivisions. The reconstruction is based on a synapsin immunolabeled wholemount brain preparation. Scans can be accessed using software AMIRA 6.5.
DOI: 10.6084/m9.figshare.22775962
title: Additional file 1 of Assessing the effects of hyperparameters on knowledge graph embedding quality

description: Additional file 1: A .zip file containing all supplementary tables, in gzip compressed .csv format, that are referenced in this manuscript.Supplementary table 1 provides the possible values that each of the tested hyperparameters could take. Supplementary table 2 describes the 233 total jobs that were attempted to be run in LibKGE in terms of: dataset, KGE method, training method, and loss function. Supplementary table 3 provides the raw data used to generate Figure 2. Supplementary table 4 shows the results of an inverse-relation-leakage analysis that was run on the UMLS dataset. Supplementary tables 5.1, 5.2, and 5.3 are the raw symmetrical adjacency matrices used to visualise the network data in figures 3A, 3B, and 3C respectively.”
DOI: 10.6084/m9.figshare.20154323
title: Additional file 3 of Single-cell transcriptomics reveals immune dysregulation mediated by IL-17A in initiation of chronic lung injuries upon real-ambient particulate matter exposure

description: Additional file 3. Pathway enrichment analysis performed based on the generated DEGs of cell cluster or cell type utilizing Gene Ontology (GO) (Tables 1–13).
DOI: 10.6084/m9.figshare.20154326.v1
title: Additional file 4 of Single-cell transcriptomics reveals immune dysregulation mediated by IL-17A in initiation of chronic lung injuries upon real-ambient particulate matter exposure

description: Additional file 4. Pathway enrichment analysis performed based on the generated DEGs of cell cluster or cell type utilizing Kyoto encyclopedia of genes and genomes pathway (KEGG) (Tables 1–13).
DOI: 10.6084/m9.figshare.20154320
title: Additional file 2 of Single-cell transcriptomics reveals immune dysregulation mediated by IL-17A in initiation of chronic lung injuries upon real-ambient particulate matter exposure

description: Additional file 2. The significant differentially expressed genes (DEGs) identified for each cell cluster using FindMarkers function (Tables 1–13).
DOI: 10.15468/dl.kw2wvf
title: Occurrence Download

description: A dataset containing 12223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2024",
 "Geometry POLYGON ((-130.7383528944533 -59.46314024951374, -130.7383528944533 32.71876227804215, -26.26729810228821 32.71876227804215, -26.26729810228821 -59.46314024951374, -130.7383528944533 -59.46314024951374))",
 "OccurrenceStatus is Present",
 "TaxonKey is Myiarchus yucatanensis Lawrence, 1871"
 ]
}

 The dataset includes 12223 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051992-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efaunl
title: Occurrence Download

description: A dataset containing 434 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Achillea erba-rota Auct.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 434 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000441-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f5wvmp
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "CoordinateUncertaintyInMeters 0.0-9889.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rubus trivialis Michx."
 ]
}

 The dataset includes 52 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005361-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vv37qe
title: Occurrence Download

description: A dataset containing 3612 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ascaphidae"
 ]
}

 The dataset includes 3612 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0231345-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wchs3o
title: Occurrence Download

description: A dataset containing 1688 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Rhinoptera bonasus (Mitchill, 1815)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1688 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008142-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qv28de
title: Occurrence Download

description: A dataset containing 18956536 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Caryophyllales"
 ]
}

 The dataset includes 18956536 records from 3226 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240403-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive6556.20220920.7
title: Lacticaseibacillus paracasei subsp. paracasei (Collins et al. 1989) Zheng et al. 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6556.20221219.7.1
title: Lacticaseibacillus paracasei subsp. paracasei (Collins et al. 1989) Zheng et al. 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6557.20220920.7
title: Lacticaseibacillus paracasei subsp. paracasei (Collins et al. 1989) Zheng et al. 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6557.20221219.7.1
title: Lacticaseibacillus paracasei subsp. paracasei (Collins et al. 1989) Zheng et al. 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6558.20220920.7
title: Limosilactobacillus vaginalis (Embley et al. 1989) Zheng et al. 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6558.20221219.7.1
title: Limosilactobacillus vaginalis (Embley et al. 1989) Zheng et al. 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.