cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5258/soton/d3209
title: Dataset in support of the paper 'H enhanced 103Rh NMR spectroscopy and relaxometry of 103Rhacac in solution'

description: Experimental data for 103Rh signal enhancement factor for 103Rhacac as a function of DualPol sequence duration T. Datapoints are normalised against thermal-equilibrium 103Rh polarisation. Dataset is associated with publication DOI:10.5194/mr-2024-10.
DOI: 10.5281/zenodo.11108393
title: Subset of global model sea level data for "Challenges, Advances and Opportunities in Regional Sea Level Projections: the Role of Ocean-shelf Dynamics"

description: Monthly sea surface height above the geoid data in NW European seas from six global simulations using the NEMO ocean model (https://www.nemo-ocean.eu/) for 1990 to 2009

ORCA0083_DFS_NWS_ssh_1990_2009, ORCA025_DFS_NWS_ssh_1990_2009, ORCA1_DFS_NWS_ssh_1990_2009, are the N006 simulation set created by Andrew Coward and the NOC Marine Systems Modelling team as used by:

Baker et al 2022 Biological Carbon Pump Sequestration Efficiency in the North Atlantic: A Leaky or a Long-Term Sink? Global Biogeochemical Cycles https://doi.org/10.1029/2021GB007286,

Wilson, C. et al. 2021 Significant variability of structure and predictability of Arctic Ocean surface pathways affects basinwide connectivity. Commun. Earth Environ. 2, 164. https://doi.org/10.1038/s43247-021-00237-0 (2021).

These simulations are forced by the Drakkar Forcing Set 5.2 (DFS) and initialised at 1958, with a nominal 1/12, 1/4 and 1 degree resolution. See references for further model details.

ORCA025_JRA_NWS_ssh_1990_2009, ORCA025_JRA_tides_NWS_ssh_1990_2009, ORCA025_JRA_ShelfPhysics_NWS_ssh_1990_2009, are new simulations produced by Chris Wilson, James Harle and the Shelf Enabled NEMO team. All are forced by the JRA reanalysis, initialised in 1976.

ORCA025_JRA_NWS_ssh_1990_2009 is a reference run based on GO9, an evolution of the Joint Marine Modelling Programme configuration described by Storkey et al 2018  UK Global Ocean GO6 and GO7: a traceable hierarchy of model resolutions, Geoscientific Model Development https://gmd.copernicus.org/articles/11/3187/2018/

ORCA025_JRA_tides_NWS_ssh_1990_2009 adds explicit tides to this.

ORCA025_JRA_ShelfPhysics_NWS_ssh_1990_2009 adds tides, Generic Length Scale Mixing and Multi-envelope vertical coordinates

Details of these simulations can be found here:

https://github.com/NOC-MSM/SE-NEMO
DOI: 10.5281/zenodo.12799438
title: Inhomogeneous magnetization of Tyrrhenian seamounts revealed from gravity and magnetic correlation analysis

description: The xyz files provide the gravity and magnetic total gradients data of the Magnaghi, Palinuro, Vavilov and Marsili seamounts in the Tyrrhenian Sea (Italy).
DOI: 10.5281/zenodo.7179025
title: An Observational and Modeling Study of Inverse-Temperature Layer and Water Surface Heat Flux

description: The data are used for an observational and modeling analysis of water temperature distribution and water surface energy budget.
DOI: 10.5281/zenodo.7196869
title: SSiB5/TRIFFID/DayCent-SOM datasets for the paper's in-situ validations and global evaluations

description: The various data used for the paper "A plant carbon-nitrogen interface coupling framework in a coupled biophysical-ecosystem-biogeochemical model: Its parameterization, implementation, and evaluation" submitted to Geoscientific Model Development for publication are shared here.
DOI: 10.5281/zenodo.7924288
title: Datasets for " Evaluation of the TOF-ACSM-CV for PM1.0 and PM2.5 measurements during the RITA-2021 field campaign"

description: For the description of the dataset, please see the readme file included in the compressed file.
DOI: 10.5281/zenodo.7973889
title: MPIC OMI Total Column Water Vapour (TCWV) Climate Data Record

description: The upload contains a long-term data set of 1°x 1° monthly mean total column water vapour (TCWV) retrieved in the visible "blue" spectral range from global measurements of the Ozone Monitoring Instrument (OMI). The TCWV data set covers the time range from January 2005 to December 2020.
DOI: 10.6084/m9.figshare.25751289
title: Single-molecule force spectroscopy data for prion-like conversion of wild-type SOD1 by pathogenic mutants G127X and G85R

description: Excel files containing (A) force-extension curve data and (B) ensemble assay data for studies on prion-like propagation of misfolding in SOD1.(A) Force-extension curve data from optical tweezers measurements of the unfolding and refolding of: (i) wild-type (WT)-G127X heterodimers of superoxide dismutase-1 (SOD1), pulling on the termini of the WT domain; (ii) WT-G127X SOD1 heterodimers pulling on the termini of the G127X domain; (iii) WT-G85R SOD1 heterodimers, pulling on the termini of the WT domain; and (iv) WT-WT homodimers (control), pulling on the termini of one of the WT domains. The file title indicates which construct was used in the measurements. In each file, data are presented as paired columns of force ("F", values listed in pN) and extension ("Ext", values listed in nm) data for sequential unfolding and refolding measurements (refolding data indicated by "_r" in column titles). The remainder of the column name indicates the molecule number (molecule 1, 2,...), followed by an underscore and the number for the set of curves measured from that molecule (set 1, 2,...), followed by an underscore and the number of the pull within that set (pull 1, 2,...). Each set of FECs is organized in a separate sheet in each file, with the tabs for the sheets labelled in the format MoleculeNumber_SetNumber.(B) Data from enzymatic assays and mass photometry assays of prion-like conversion in SOD1. Conversion assay results show the percent inhibition of WST-1 formazan formation by SOD1 at different time-points and under different solution conditions. Mass photometry results list the masses for all binding and unbinding events (respectively, positive and negative values) with SOD1 heterodimer alone, 10C12 antibody alone, and SOD1+antibody, at 0 and 48 hr incubation times.
DOI: 10.6084/m9.figshare.26379898
title: <b>Global patterns and drivers of soil dissolved organic carbon concentration</b>

description: Dissolved organic carbon (DOC), being the most active carbon pool in soils, plays a crucial role in soil carbon cycling, plant productivity, and global climate change. Assessing the amount of soil DOC is essential for accurately understanding ecosystem functioning and services. Nevertheless, the global driving factors and distribution of soil DOC remain inadequately quantified because of the scarcity of large-scale data. Here, a comprehensive database of global 12807 soil DOC concentration from 975 target literature was constructed. Detailed geographic location, climate, and soil properties are also recorded as the predictors of soil DOC. Machine learning techniques were employed to assess the relative importance of various predictors in determining soil DOC concentration and subsequently extended predictions to a global scale. Global soil DOC concentration ranged widely from 0.04 to 7859 mg kg-1, with the average of 222.78 mg kg-1. The selected 12 variables (including soil properties, month, climate, and ecosystem) could explain 65% of the variance in soil DOC concentration. Elevation, soil clay, and soil organic carbon were the first three important predictors. The predicted soil DOC concentration increased significantly from the equator to the poles. Soil DOC stock in the topsoil layer (0-30 cm) amounts to 12.17 Pg, with huge variations observed across the different continents. Our results are instrumental for informing strategies on soil management practices, climate change mitigation, and ecosystem services. In addition, our database combines with other carbon pool to explore total soil carbon turnover and constrain Earth carbon models.
DOI: 10.6084/m9.figshare.26548492
title: PRISMA_2020_checklist_flowchart_F1000.pdf

description: This is a systematic review and meta-analysis comparing the survival of early-onset and average-onset pancreatic ductal adenocarcinoma patients.
DOI: 10.5281/zenodo.10082290
title: Refined Bathymetric Prediction based on Feature Extraction of Gravity Field Signals: BATHY-FE

description: BATHY-FE is a refined global seafloor model derived from extraction of learnt bathymetric signatures inherent in gravity field signals. It spans longitudes -180 ~ 180, and latitudes -80 ~ 80. It contains more short-wavelength seafloor features, and is superior to existing bathymetric models in almost all marine regions, especially at regions close to the poles. It is a GMT readable grid file (i.e., a matrix of seafloor model, and vectors of longitudes and latitudes) with a spatial resolution of 15 arc-seconds.
Included in this repository are a MATLAB livescript and sample data in which a demonstration of the algorithm over a region north of Alaska and Canada is presented.
DOI: 10.5281/zenodo.10783560
title: Smart pixel dataset

description: A simulated dataset of silicon pixel clusters produced by charged particles (pions), where the particle kinematics are taken from fitted tracks in CMS Run 2 data. The interaction of the charged particles with a 100 micron thick silicon pixel detector is simulated using a time-sliced version of PixelAV. The pixel detector is taken to be a 21x13 array of pixels with 50x12.5 micron pitch, situated 30mm from the particle's origin point. The detector is immersed in a 3.8T magnetic field parallel to the sensor x coordinate. The simulation covers a $p_T$ range from 0.2-0.4 GeV.

Positively and negatively charged particles are saved in the directories positive-charge and negative-charge, respectively. Truth properties of each particle are saved in the labels files, which include columns x-entry, y-entry, z-entry, n_x, n_y, n_z, number_eh_pairs, y-local, pt, cotAlpha, cotBeta, y-midplane, x-midplane. The particle impact point on the sensor surface is described by (x-entry, y-entry), and the impact point at the mid-plane of the sensor is (x-midplane, y-midplane). These impact points are in units of microns. The track direction is given by (n_x, n_y, n_z). The number of electron-hole pairs created in the silicon is number_eh_pairs. The y distance in mm between the center of the 21x13 pixel array and the center of a flat module is denoted by y-local (see included diagram).  The particle transverse momentum ($p_T$) in GeV is stored in the pt variable, with the sign indicating the sign of the particle charge. The angle of incidence in the x-z plane is described by cotAlpha, and the angle of incidence in the y-z plane (the bending plane of the magnetic field) is described by cotBeta. 

The deposited charge per pixel per time slice is saved in the recon3D files. Reshaping each line as (20,13,21) gives the three dimensional cluster in (time, y, x). Each slice in time corresponds to a window of 200 ps.  

 

Changes with respect to version 1: 



File format is changed to parquet for better compression

Files contain simulation of both negatively and positively charged particles (before, the charges were saved separately)

20 200ps time slices are included, rather than only 8

Small bug fix in simulation impacting charge at low $p_T$


Changes with respect to version 2: 



Three corrupted files fixed
DOI: 10.5281/zenodo.11390750
title: Identifying the magnetospheric drivers of giant undulations: Global modeling of the evolving inner magnetosphere and its auroral manifestations

description: We present the first global geospace simulation to reproduce auroral giant undulations (GUs). To identify their magnetospheric drivers, we employ the MAGE (Multiscale Atmosphere-Geospace Environment) model in a case study of a geomagnetic storm for which there were spacecraft- and ground-based observations of GUs. The model reproduces the spatial and temporal scales of the GUs as well as the presence of duskside subauroral polarization streams (SAPS) and plasmapause undulations. Based on our modeling, we are able to identify the magnetospheric drivers of GUs as mesoscale ring current injections which, after drifting westward, create inverted regions of flux-tube entropy (FTE) and subsequent interchange instability. Outward-protruding interchange fingers disrupt shielding of the inner magnetosphere, creating longitudinally-localized ripples in magnetospheric convection equatorward of the magnetospheric instability, which structure the plasmapause and duskside diffuse precipitation. While not causal, SAPS and plasmapause undulations are a consequence of the unstable magnetospheric configuration.
DOI: 10.5281/zenodo.11626608
title: Hypocenters, Focal Mechanisms, and Radiated Energy of Small Earthquakes in Northern Ibaraki Prefecture, Japan

description: Estimated hypocenters, focal mechanisms, and radiated energy of small earthquakes in northern Ibaraki Prefecture, Japan, are available here.



ASCII file "hypo.dat" contains the relocated hypocenters.

ASCII files "mec1.dat" and "mec2.dat" contain the focal mechanisms estimated for the MJMA2.0-4.0 and MJMA1.0-2.0 earthquakes, respectively.

ASCII file "er. dat" contains the estimated radiated energy.


The contents of each file are listed on the first line of the file.
DOI: 10.5281/zenodo.4571667
title: Dynamics of global wetlands by TOPMODEL

description: Dynamics of global wetlands are closely linked to biodiversity conservation, hydrology, and greenhouse gas emissions. However, long-term time series of global wetland products are still lacking. Using a TOPMODEL-based diagnostic model, we produced an ensemble of 28 gridded maps of monthly global/regional wetland extent products at 0.25° × 0.25° spatial resolution based on four observation-based wetland products and seven reanalysis soil moisture datasets for the period 1980–2020. The parameters of the model are calibrated on grid-scale against four observation-based wetland products. Overall, our products can capture the spatial distributions, seasonal cycles, and interannual variabilities of observed wetland extent well, and also show a good agreement with satellite-based terrestrial water storage estimates. The resulting mean annual maximum global wetland area fluctuates within a range of 3.3–5.6 Mkm<sup>2</sup>. The long temporal coverage beyond the era of satellite datasets, the global coverage and the opportunity to provide real-time update from ongoing SM data make these products helpful for various applications such as analyzing the wetland-related methane emission.
DOI: 10.15468/dl.frsjjr
title: Occurrence Download

description: A dataset containing 183953 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Tinca tinca (Linnaeus, 1758)"
 ]
}

 The dataset includes 183953 records from 506 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010063-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/pcbp4kvp4r.3
title: CH4 and CO2 fluxes in different tectonic settings around the western margin of the Ordos block in China

description: The database contains CH4, CO2 fluxes and outputs in different tectonic settings around the western margin of the Ordos block in China, and CO2 fluxes near the fault zones in the world.
DOI: 10.34740/kaggle/dsv/6205377
title: NHANES 1988-2018
DOI: 10.5281/zenodo.12595183
title: Datasets related to the paper for Radio Science Special Section GASS2023 (Paper #2024RS008022)
title: Figures related to the paper for Radio Science Special Section GASS2023 (Paper #2024RS008022)
DOI: 10.5281/zenodo.3993111
title: Dataset for "Seasonal dynamics of the COS and CO2 exchange of a managed temperate grassland"

description: Data of measurements and model output of the publication "Seasonal dynamics of the COS and CO<sub>2</sub> exchange of a managed temperate grassland". https://doi.org/10.5194/bg-2020-27 Data consists of micrometeorological data, COS and CO<sub>2</sub> flux measurements for a managed temperate mountain grassland in Austria. For additional information please contact: Georg.Wohlfahrt@uibk.ac.at changes in version 2: includes extrapolated COS mixing ratios & includes the ustar filter for the flux data changes in version 3: corrected every instance of mixing ratio with mole fraction
description: This study was financially supported by the Austrian National Science Fund (FWF; contracts P26931, P27176, and I03859), the Tyrolean Science Fund (contract UNI‐0404/1801), and the University of Innsbruck (Infrastructure funding by Research Area Alpine Space‐Man and Environment to G. W). Financial support to F. M. S. was provided through a PhD scholarship by the University of Innsbruck. We thank family Hofer (Neustift, Austria) for kindly granting us access to the study site.
DOI: 10.6084/m9.figshare.24711369
title: Data related to Network pharmacology studies

description: The data describes the targets related to the PXT bioactives, and male sexual function and their common targets. Pathways through which PXT might modulate the male sexual function are also mentioned in the KEGG sheet.Supplementary data has the HPTLC fingerprints of each plant present in the PXT formulation.<br>
DOI: 10.6084/m9.figshare.26130982
title: Supplementary Tables & Figures

description: This is the supplementary file for the article: 'The Association between Early-Onset Pancreatic Ductal Adenocarcinoma and Patient’s Survival: A Systematic Review and Meta-Analysis'.
DOI: 10.15156/bio/786385
title: UNITE QIIME release for Fungi

description: Three sets of QIIME files are released, corresponding to the SHs resulting from clustering at the 97% and 99% threshold levels. The third set of files is the result of a dynamic use of clustering thresholds, such that some SHs are delimited at the 97% level, some at the 97.5% level, some at the 98% level, and so on; these choices were made manually by experts of those particular lineages of fungi. The syntax is the same throughout the three sets of files. Includes singletons set as RefS (in dynamic files).
DOI: 10.1594/ieda/317089
title: Multi-Channel Seismic Shot Data from the Philippine Sea acquired during the R/V Robert D. Conrad expedition RC2006 (1976)

description: This data set was acquired with the LDEO Multi-Channel Seismic system during R/V Robert D. Conrad expedition RC2006 conducted in 1976 (Chief Scientist: Dr. Dennis Hayes). These data files are of SEGY format and include Multi-Channel Reflection Seismic shot data that have not been processed. Funding was provided by NSF grant: UC-NSF-C482-2 scope G.
DOI: 10.1594/ieda/317105
title: Multi-Channel Seismic Shot Data from the Philippine Sea acquired during the R/V Vema expedition V3613 (1980)

description: This data set was acquired with the LDEO Multi-Channel Seismic system during R/V Vema expedition V3613 conducted in 1980 (Chief Scientist: Dr. Dennis Hayes). These data files are of SEGY format and include Multi-Channel Reflection Seismic shot data that have not been processed. These data are cited by Lewis and Hayes, 1983.
DOI: 10.1594/ieda/321924
title: Raw Wide-Angle Shot Data (Sonobuoy) from the South China Sea acquired during the Robert D. Conrad expedition RC2612 (1985)

description: This sonobuoy data set was acquired during Robert D. Conrad expedition RC2612 conducted in 1985 (Chief Scientist: Dr. Dennis Hayes). These data were acquired during multi (or single) channel seismic operations and the seismic shot time navigation file for MCS operations should be used for processing the sonobuoy data. Data files are of SEGY format and include Wide-Angle Seismic shot data that have not been processed. Funding was provided by NSF grant(s): OCE84-15973.
DOI: 10.17632/gr4wddry4k.1
title: Chronology of sedimentation and landscape evolution in the Okavango Rift Zone, a developing young rift in southern Africa

description: This dataset accompanies the paper published in JGR: Earth Surface that carries the same title. It contains data that was used to produce Grain Size Distribution plots and to program and data used to model the residence time of surficial sand in the studied area. It also denotes the exact locations of the pits mentioned in the paper. 
Grain size distribution of 54 samples collected in pits in the Chobe Enclave. Data was 
obtained by using a laser diffraction Beckmann Coulter LS 13320 on the &lt;2 mm size fraction of 
carbonate and organic matter-free material. analyses performed at the University of Lausanne by T. Mokatse.
The manual and applications of the Cosmolian program, Created by S.Vainer and Y. Ben Dor are available in
1) https://doi.org/10.1016/j.quageo.2018.08.002 
2)https://doi.org/10.1002/esp.5169
DOI: 10.17632/mv332nkv5s.1
title: Cross-country price dispersion: Retail network or national border?

description: Online appendix and replication code for the paper "Cross-country price dispersion: Retail network or national border?" by Teresa Messner, Fabio Rumler, and Georg Strasser. This study examines the impact of a national border on grocery prices in the economically and culturally integrated German-Austrian border region. Based on retail transactions from a large household panel, we analyse price diﬀerences of identical products sold within a narrow band along the border. We show that even retailers operating in both countries charge diﬀerent prices for identical products on each side of the border. Over all products, prices are on average more than 14% higher on the Austrian side. The underlying absolute price diﬀerences average to around 20%, but vary over products and time, suggesting limits to arbitrage in cross-border shopping. This study demonstrates that even in highly integrated areas, national borders continue to matter for retail pricing.
DOI: 10.25326/704
title: IAGOS Observational Data NRT – Time series and vertical profiles

description: The IAGOS NRT time series and vertical profiles data product contain all in situ observations made by IAGOS instruments (IAGOS-CORE) on board of the IAGOS fleet. Coordinates, timestamp and meteorological variables measured by the aircrart sensors are provided in addition to the observed variables.

NRT data is a special type of Level 1 data that are developed for fast distribution using automated or fast human quality control within a certain short time interval (typically 72 hours) of the measurement. NRT data are provided to operational users such as Copernicus. This dataset is meant to be an intermediate one, which will be no longer accessible to users as soon as the corresponding Level 2 data is available (after it has been fully calibrated about a year after observation). 

Three files are provided for each flight: one containing the full time series, one for the take-off profile and one for the landing profile. They contain all the variables at the same time resolution (4 seconds for IAGOS-CORE).

<span style="color:red"><i class="fa-sharp fa-solid fa-triangle-exclamation"></i><img src="https://raw.githubusercontent.com/seanyeh/fontawesome-svgs/a16040d06ccdc20f12a3498af75baed13e2aea42/svg/exclamation-triangle-light.svg" style="width:20px"/>This dataset cannot be used for scientific peer reviewed publication, at the exception of privileged partners such as CAMS.</span>.
DOI: 10.26093/cds/vizier.36410170
title: Ultracool dwarf K2 light curves

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Occurrence rate of exoplanets orbiting ultracool dwarfs as probed by K2.' (bibcode: 2020A&A...641A.170S)