cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10863677
title: Survey: Qualitative FGI research on the processing, sourcing, utilisation and management of wood biomass (NCN) DEC-2020/39/I/HS4/03533

description: The dataset contains the proceedings of a qualitative FGI of representatives of wood biomass processing and harvesting companies. The research was conducted from 5 July 2022 to 7 July 2022 using only the FGI method. The survey was conducted in face-to-face meetings among respondents.The study was funded by National Science Centre in Poland under agreement National Center of Science (NCN) through grant DEC-2020/39/I/HS4/03533
DOI: 10.5281/zenodo.10863678
title: Survey: Qualitative FGI research on the processing, sourcing, utilisation and management of wood biomass (NCN) DEC-2020/39/I/HS4/03533

description: The dataset contains the proceedings of a qualitative FGI of representatives of wood biomass processing and harvesting companies. The research was conducted from 5 July 2022 to 7 July 2022 using only the FGI method. The survey was conducted in face-to-face meetings among respondents.The study was funded by National Science Centre in Poland under agreement National Center of Science (NCN) through grant DEC-2020/39/I/HS4/03533
DOI: 10.5281/zenodo.10863713
title: Mephisto_fraserbrunneri_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10863714
title: Mephisto_fraserbrunneri_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10863729
title: Halimochirurgus_centriscoides_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10863730
title: Halimochirurgus_centriscoides_zanfona_1.fasta.gz

description: .
DOI: 10.34740/kaggle/dsv/7922105
title: 2021 World Population (updated daily)
DOI: 10.5281/zenodo.10863737
title: Hollardia_hollardi_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10863738
title: Hollardia_hollardi_zanfona_1.fasta.gz

description: .
DOI: 10.34740/kaggle/dsv/7922127
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.10863727
title: Simulation of the efficiency of a reversed supply chain of wood biomass using different types of transport units  (NCN) DEC-2020/39/I/HS4/03533

description: Data describing simulations related to the standardisation of loading units for the transport of wood biomass. The effectiveness of assumptions relating to the use of different types of packaging were verified from the perspective of the number of vehicles required and their emissions. The relationship between the size and specification of the wood biomass load and the packaging used was indicated.  The study was funded by National Science Centre in Poland under agreement National Center of Science (NCN) through grant DEC-2020/39/I/HS4/0353
DOI: 10.5281/zenodo.10863728
title: Simulation of the efficiency of a reversed supply chain of wood biomass using different types of transport units  (NCN) DEC-2020/39/I/HS4/03533

description: Data describing simulations related to the standardisation of loading units for the transport of wood biomass. The effectiveness of assumptions relating to the use of different types of packaging were verified from the perspective of the number of vehicles required and their emissions. The relationship between the size and specification of the wood biomass load and the packaging used was indicated.  The study was funded by National Science Centre in Poland under agreement National Center of Science (NCN) through grant DEC-2020/39/I/HS4/0353
DOI: 10.6084/m9.figshare.24678900
title: data1.xlsxdata1.xlsx

description: Data Availability StatementData (Valizadeh et al.,) are available at https://10.6084/m9.figshare.24678900.
DOI: 10.5281/zenodo.10863756
title: bathyphylax_bombifrons_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10863757
title: bathyphylax_bombifrons_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10863758
title: Parahollardia_lineata_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10863759
title: Parahollardia_lineata_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10863764
title: Parahollardia_schmidti_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10863765
title: Parahollardia_schmidti_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10863769
title: paratriacanthodes_retrospinis_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10863770
title: paratriacanthodes_retrospinis_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10863762
title: Investigating the correlation of control parameters in reversed wood biomass supply chains  (NCN) DEC-2020/39/I/HS4/03533

description: Results of calculations of mutual correlations between parameters of reversed wood biomass supply chains, referring to the statistical yearbooks of the State Forests (in Poland). Identification of predictions of increasing values of individual parameters of reversed wood biomass supply chains.The study was financed by National Science Centre in Poland under agreement DEC-2020/39/I/HS4/03533
DOI: 10.5281/zenodo.10863763
title: Investigating the correlation of control parameters in reversed wood biomass supply chains  (NCN) DEC-2020/39/I/HS4/03533

description: Results of calculations of mutual correlations between parameters of reversed wood biomass supply chains, referring to the statistical yearbooks of the State Forests (in Poland). Identification of predictions of increasing values of individual parameters of reversed wood biomass supply chains.The study was financed by National Science Centre in Poland under agreement DEC-2020/39/I/HS4/03533
DOI: 10.5281/zenodo.10863772
title: pseudotriacanthus_strigilifer_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10863773
title: pseudotriacanthus_strigilifer_zanfona_1.fasta.gz

description: .
DOI: 10.6084/m9.figshare.24501310.v4
title: Datasets and codes - Insect acoustic activity, Do Nascimento et al. 2024

description: Dataset and codes for Do Nascimento et al. 2024.
DOI: 10.5281/zenodo.10863776
title: triacanthodes_anomalus_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10863777
title: triacanthodes_anomalus_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10863782
title: triacanthodes_ethiops_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.10863783
title: triacanthodes_ethiops_zanfona_1.fasta.gz

description: .
DOI: 10.6084/m9.figshare.25465480
title: the raw imaging figures and supplementary data for MOPA

description: The raw zebrafish and mouse embryos image in MOPA and the cCRE files of MOPA<br>
DOI: 10.34740/kaggle/dsv/7922483
title: COVID Vaccination in World (updated daily)
DOI: 10.6084/m9.figshare.11569113
title: Raw_data_AA_BA.xlsx

description: Dataset
DOI: 10.6084/m9.figshare.11569113.v1
title: Raw_data_AA_BA.xlsx

description: Dataset
DOI: 10.6084/m9.figshare.11569098
title: Acute cannabis toxicity

description: <b>Objective:</b> We describe the clinical effects of, and products associated with, acute exposures to cannabis during the early legalization period of recreational cannabis in Oregon and Alaska. <b>Methods:</b> This was an observational study of Oregon/Alaska Poison Center data between 4 December 2015 and 15 April 2017. A standardized data collection instrument was created for this study that captured information about cannabis product description, route of exposure, intentional vs unintentional exposure, product dose, product manufacture source, product ownership source, initial vital signs, clinical signs and symptoms, and subject disposition. Subjects were included if the Poison Center received a call about an acute exposure to cannabis from the subject, subject’s family member or friend, or healthcare worker participating in the subject’s care. Subjects were excluded if there was no evident exposure, the exposure was chronic, there were co-ingestants, or the subject was non-human (e.g. pet). <b>Results:</b> Two hundred fifty three individuals were acutely exposed to cannabis (median age 20 years; range 8 months – 96 years; 54.2% males): 71 (28.1%) children (&lt;12 years), 42 (16.6%) adolescents (12–17 years), and 140 (55.3%) adults (≥18 years). Children were most likely to unintentionally (98.6%) ingest (97.2%) homemade (35.2%) edibles (64.8%) belonging to a family member (73.2%) and experience sedation (52.1%). Adults were most likely to intentionally (88.6%) ingest (66.4%) retail (40.0%) edibles (48.6%) and experience neuroexcitation (47.1%). Adolescents’ exposures had similarities to both adult and children; they were most likely to intentionally (81.0%) ingest (50.0%) homemade (23.8%) edibles (45.2%) belonging to a friend (47.3%) and to experience either neuroexcitation (42.9%) or sedation (40.5%). Among all ages, tachycardia and neuroexcitation were more likely following inhalation exposures compared to ingestions. Eight subjects were admitted to an intensive care unit, including three patients who were intubated; one subject died. Edibles were the most common products to cause symptoms in all age groups, while concentrated products were more likely to lead to intubation, especially when ingested. Children in particular had a higher likelihood of intensive care unit admission and intubation following exposure to concentrated products. <b>Conclusions:</b> Neurotoxicity is common after acute cannabis exposures. Children experienced unintentional exposures, particularly within the home and occasionally with major adverse outcomes. Concentrated products such as resins and liquid concentrates were associated with greater toxicity than other cannabis products. These findings may help guide other states during the early retail cannabis legalization period.
DOI: 10.6084/m9.figshare.11569098.v1
title: Acute cannabis toxicity

description: <b>Objective:</b> We describe the clinical effects of, and products associated with, acute exposures to cannabis during the early legalization period of recreational cannabis in Oregon and Alaska. <b>Methods:</b> This was an observational study of Oregon/Alaska Poison Center data between 4 December 2015 and 15 April 2017. A standardized data collection instrument was created for this study that captured information about cannabis product description, route of exposure, intentional vs unintentional exposure, product dose, product manufacture source, product ownership source, initial vital signs, clinical signs and symptoms, and subject disposition. Subjects were included if the Poison Center received a call about an acute exposure to cannabis from the subject, subject’s family member or friend, or healthcare worker participating in the subject’s care. Subjects were excluded if there was no evident exposure, the exposure was chronic, there were co-ingestants, or the subject was non-human (e.g. pet). <b>Results:</b> Two hundred fifty three individuals were acutely exposed to cannabis (median age 20 years; range 8 months – 96 years; 54.2% males): 71 (28.1%) children (&lt;12 years), 42 (16.6%) adolescents (12–17 years), and 140 (55.3%) adults (≥18 years). Children were most likely to unintentionally (98.6%) ingest (97.2%) homemade (35.2%) edibles (64.8%) belonging to a family member (73.2%) and experience sedation (52.1%). Adults were most likely to intentionally (88.6%) ingest (66.4%) retail (40.0%) edibles (48.6%) and experience neuroexcitation (47.1%). Adolescents’ exposures had similarities to both adult and children; they were most likely to intentionally (81.0%) ingest (50.0%) homemade (23.8%) edibles (45.2%) belonging to a friend (47.3%) and to experience either neuroexcitation (42.9%) or sedation (40.5%). Among all ages, tachycardia and neuroexcitation were more likely following inhalation exposures compared to ingestions. Eight subjects were admitted to an intensive care unit, including three patients who were intubated; one subject died. Edibles were the most common products to cause symptoms in all age groups, while concentrated products were more likely to lead to intubation, especially when ingested. Children in particular had a higher likelihood of intensive care unit admission and intubation following exposure to concentrated products. <b>Conclusions:</b> Neurotoxicity is common after acute cannabis exposures. Children experienced unintentional exposures, particularly within the home and occasionally with major adverse outcomes. Concentrated products such as resins and liquid concentrates were associated with greater toxicity than other cannabis products. These findings may help guide other states during the early retail cannabis legalization period.
DOI: 10.6084/m9.figshare.11569113.v2
title: Raw_data_AA_BA.xlsx

description: Dataset
DOI: 10.6084/m9.figshare.11569113.v3
title: Raw_data_AA_BA.xlsx

description: Dataset
DOI: 10.6084/m9.figshare.11569113.v4
title: Raw_data_AA_BA.xlsx

description: Dataset
DOI: 10.6084/m9.figshare.11569113.v6
title: Raw_data_AA_BA.xlsx

description: Dataset
DOI: 10.6084/m9.figshare.11569113.v5
title: Raw_data_AA_BA.xlsx

description: Dataset
DOI: 10.6084/m9.figshare.11568894
title: Supplementary material of Cavassim et al., 2020: Symbiosis genes show a unique pattern of introgression and selection within a Rhizobium leguminosarum species complex

description: Supplementary material (Tables and Figures) for the article: Cavassim et al. 2020: Symbiosis genes show a unique pattern of introgression and selection within a Rhizobium leguminosarum species complex.Data.zip: comprises gene alignments and SNP matrices of a Rhizobium complex.Further detailed is found in the articlehttps://doi.org/10.1099/mgen.0.000351<br><br>
DOI: 10.6084/m9.figshare.11568894.v2
title: Gene alignments and SNP matrices of a Rhizobium complex

description: Orthologous gene groups were identified among a total of 1,468,264 predicted coding sequences present across all (196) strains. We used two software packages for ortholog identification: Proteinortho [Lechner et al., 2014] and Syntenizer3000. SNPs matrices were corrected for population structure. Further details are provided in the article Cavassim et al. 2020: Symbiosis genes show a unique pattern of introgression and selection within a Rhizobium leguminosarum species complex.<br>
DOI: 10.6084/m9.figshare.11568894.v3
title: Gene alignments and SNP matrices of a Rhizobium complex

description: Orthologous gene groups were identified among a total of 1,468,264 predicted coding sequences present across all (196) strains. We used two software packages for ortholog identification: Proteinortho [Lechner et al., 2014] and Syntenizer3000. SNPs matrices were corrected for population structure. Further details are provided in the article Cavassim et al. 2020: Symbiosis genes show a unique pattern of introgression and selection within a Rhizobium leguminosarum species complex.<br>
DOI: 10.6084/m9.figshare.11568894.v5
title: Supplementary material of Cavassim et al., 2020: Symbiosis genes show a unique pattern of introgression and selection within a Rhizobium leguminosarum species complex

description: Supplementary material (Tables and Figures) for the article: Cavassim et al. 2020: Symbiosis genes show a unique pattern of introgression and selection within a Rhizobium leguminosarum species complex.Data.zip: comprises gene alignments and SNP matrices of a Rhizobium complex.Further detailed is found in the articlehttps://doi.org/10.1099/mgen.0.000351<br><br>
DOI: 10.6084/m9.figshare.11568894.v4
title: Supplementary material of Cavassim et al., 2020: Symbiosis genes show a unique pattern of introgression and selection within a Rhizobium leguminosarum species complex

description: Supplementary material (Tables and Figures) for the article: Cavassim et al. 2020: Symbiosis genes show a unique pattern of introgression and selection within a Rhizobium leguminosarum species complex.Data.zip: comprises gene alignments and SNP matrices of a Rhizobium complex.Further detailed is found in the article https://doi.org/10.1101/526707.<br><br>
DOI: 10.5522/04/11568759
title: Internet of Things Discrete Choice Experiment Wearables data

description: The data are for a discrete choice experiment that examined the impact of security labels, device functionality and price on consumer decision making.This dataset is for internet connected wearables. <br>Article will be published in PlosOne.
DOI: 10.5522/04/11568729
title: Internet of Things Discrete Choice Experiment SmartTV data

description: The data are for a discrete choice experiment that examined the impact of security labels, device functionality and price on consumer decision making. This dataset is for internet connected Televisions. <br>Article will be published in PlosOne.<br>
DOI: 10.5522/04/11568729.v1
title: Internet of Things Discrete Choice Experiment SmartTV data

description: The data are for a discrete choice experiment that examined the impact of security labels, device functionality and price on consumer decision making. This dataset is for internet connected Televisions. <br>Article will be published in PlosOne.<br>
DOI: 10.6084/m9.figshare.11568675
title: Pattern features of zebrafish upon varying long-range interaction scale in melanophore cell birth

description: We provide summary pattern features of model simulations of wild-type, shady, and pfeffer zebrafish patterns generated using the agent-based model from "Volkening A and Sandstede B (2018) Iridophores as a source of robustness in zebrafish stripes and variability in Danio patterns. Nat. Commun. 9(3231)." <br>The simulations were run by varying the inner radius parameter corresponding to the long-range interaction scale in melanophore cell birth from 10 to 400 um in increments of 25 um (default parameter value from the model is 210 um). We ran 100 simulations under each parameter regime for wild-type, pfeffer, and shady (the nacre mutation lacks melanophore cells so we don't include it in this dataset). <br>The shady patterns were generated by turning off cell birth for iridiopores, and, the pfeffer patterns were generated by turning off cell birth for xanthophores. All simulations were run in MATLAB. <br>For wild type, the summary pattern features provide statistics about the simulation outputs in terms of topological betti numbers of the stripe patterns, stripe width, straightness of stripes, local cell-cell distances and local cell-cell densities, day in which stripes the second and third interstripes X1V and X1D form, and the melanophore coefficient of variation. For the shady and pfeffer mutations, the summary pattern features provide statistics about the simulation outputs in terms of topological betti numbers of the spot patterns, size of each cluster/spot, alignment of the spots, roundness of the spots (pca ev ratio), local cell-cell distances and local cell-cell densities, and the melanophore coefficient of variation. All of these pattern features were computed automatically using the methods from "McGuirl M, Volkening A, and Sandstede B (2019) Topological data analysis of zebrafish patterns. arXiv. 1910.08433." <br>All data are in the form of .mat files and the pattern features are contained in the pattern_info variable. We also provide .csv files which the data from each parameter regime in a single file.
DOI: 10.6084/m9.figshare.11568627
title: Supplementary material from Dealing with uncertainty in agent-based models for short-term predictions

description: Agent-based models (ABMs) are gaining traction as one of the most powerful modelling tools within the social sciences. They are particularly suited to simulating complex systems. Despite many methodological advances within ABM, one of the major drawbacks is their inability to incorporate real-time data to make accurate short-term predictions. This paper presents an approach that allows ABMs to be dynamically optimized. Through a combination of parameter calibration and data assimilation (DA), the accuracy of model-based predictions using ABM in real time is increased. We use the exemplar of a bus route system to explore these methods. The bus route ABMs developed in this research are examples of ABMs that can be dynamically optimized by a combination of parameter calibration and DA. The proposed model and framework is a novel and transferable approach that can be used in any passenger information system, or in an intelligent transport systems to provide forecasts of bus locations and arrival times.
DOI: 10.6084/m9.figshare.11568627.v1
title: Supplementary material from Dealing with uncertainty in agent-based models for short-term predictions

description: Agent-based models (ABMs) are gaining traction as one of the most powerful modelling tools within the social sciences. They are particularly suited to simulating complex systems. Despite many methodological advances within ABM, one of the major drawbacks is their inability to incorporate real-time data to make accurate short-term predictions. This paper presents an approach that allows ABMs to be dynamically optimized. Through a combination of parameter calibration and data assimilation (DA), the accuracy of model-based predictions using ABM in real time is increased. We use the exemplar of a bus route system to explore these methods. The bus route ABMs developed in this research are examples of ABMs that can be dynamically optimized by a combination of parameter calibration and DA. The proposed model and framework is a novel and transferable approach that can be used in any passenger information system, or in an intelligent transport systems to provide forecasts of bus locations and arrival times.
DOI: 10.6084/m9.figshare.11568528
title: Substantial intrinsic variability in chemoradiosensitivity of newly established anaplastic thyroid cancer cell-lines

description: <b>Background:</b> Well characterized human cell lines are needed for preclinical treatment studies of anaplastic thyroid cancer (ATC). <b>Aims/Objectives:</b> The aim was to establish, verify and characterize a panel of ATC cell lines. <b>Material and methods:</b> Cell lines were established from ATC fine-needle aspiration biopsies and characterized genetically and functionally regarding treatment sensitivities. <b>Results:</b> Eight cell lines were established <i>in vitro</i> and the anaplastic thyroid origin was verified. Seven of the cell lines were also grown as xenografts. The cell lines harboured complex karyotypes with modal numbers in hyperdiploid to near-pentaploid range. Five were <i>TP53</i> mutated and three carried the <i>BRAF</i><sup>V600E</sup> mutation. None had rearrangements of <i>RET</i>. For doxorubicin, IC<sub>50</sub> ranged from 0.42 to 46 nmol/L and for paclitaxel from 1.6 to 196 nmol/L. Radiation sensitivity varied between 2.6 and 6.3 Gy. Two of the <i>BRAF</i> mutated cell lines displayed high sensitivity to vemurafenib, while the third was similar to the wild-type ones. <b>Conclusions and significance:</b> We describe a series of new ATC cell lines demonstrating large heterogeneity in the response to cytostatic drugs and the BRAF inhibitor vemurafenib. The observations are relevant to future attempts to optimize treatment combinations for ATC.