cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.nohktt
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lycengraulis grossidens (Spix & Agassiz, 1829)",
 "Country is Colombia"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005416-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sdawes
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maxillaria lilacea Barb.Rodr."
 ]
}

 The dataset includes 22 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0170731-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gmhcr2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepanthes oxybaphon Luer & R.Escobar"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0170732-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zlsr8v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "or" : [
 "ScientificName is Begonia × pictavensis Bruant ex André",
 "ScientificName is Begonia × pictavensis",
 "ScientificName is Begonia x pictavensis",
 "ScientificName is Begonia x pictavensis Bruant ex André",
 "ScientificName is Begonia xpictavensis Bruant ex André",
 "ScientificName is Begonia pictavensis Bruant ex André"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005416-160803222355964/datasets/export for details.
DOI: 10.15468/dl.xz4ewe
title: Occurrence Download

description: A dataset containing 308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Pitcairnia brittoniana (Mez) Mez"
 ]
}

 The dataset includes 308 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005790-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5bj5ne
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Machaerophorus laticarpus Al-Shehbaz, A.Cano, M.Cueva & Salariato"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0170734-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pdkwgh
title: Occurrence Download

description: A dataset containing 810036 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Museums Victoria provider for OZCAM"
 ]
}

 The dataset includes 810036 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045847-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ydmnhq
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-102.735836204986 21.735311851453616,-102.70670430329527 21.735311851453616,-102.70670430329527 21.76444375314435,-102.735836204986 21.76444375314435,-102.735836204986 21.735311851453616))",
 "HasCoordinate is true",
 "TaxonKey is Crotalus aquilus Klauber, 1952",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005416-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.789rd2
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Linochilus eriophorus (Wedd.) Saldivia & O.M.Vargas"
 ]
}

 The dataset includes 111 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0170733-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hh1dtk
title: Occurrence Download

description: A dataset containing 1508 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Frankliniella occidentalis (Pergande, 1895)"
 ]
}

 The dataset includes 1508 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049651-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s2rbut
title: Occurrence Download

description: A dataset containing 2342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Palicourea padifolia (Willd. ex Schult.) C.M.Taylor & Lorence"
 ]
}

 The dataset includes 2342 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005764-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/08p7sp
title: MATILDA

description: Atmospheric visibility, or meteorological visibility, is an important information for high-stake applications, such as transport safety and air quality. It is normally monitored by means of dedicated optical sensors, but those are rather expensive, and are thus deployed on a limited number of sites considered critical (such as airports). As a consequence, major efforts have been devoted to the development of methods to monitor the weather, and more specifically to monitor the atmospheric visibility, with surveillance cameras, because they are ubiquitous and can serve several purposes. One problem which always arises when working on such a method is that of validation, because reference data is not easy to come by. That is the reason why the Ifsttar (which later became the Université Gustave Eiffel) collaborated with Meteo France in 2009 in an effort to collect outdoor images associated with meteorological optical range and sky luminance data, in order to test their own camera-based visibility estimation methods.
DOI: 10.57745/42wnrj
title: Virome HTS datasets for carrot populations from France and Spain

description: HTS virome data of wild, cultivated and off-type carrot. This dataset is composed of 51 fasta files and one table summarizing the information on the carrot populations analyzed.
DOI: 10.57745/9ysdiv
title: Fisheries Impact pathway: making global and regionalised impacts on marine ecosystem quality accessible in Life Cycle Impact Assessment.

description: Characterisation factors associated to the publication "Fisheries Impact pathway: making global and regionalised impacts on marine ecosystem quality accessible in Life Cycle Impact Assessment."
DOI: 10.57745/3mn2bu
title: Dataset and R script associated to the publication of Billaud and co-authors (2024) "Unveiling Pepper Immunity’s Robustness to Temperature Shifts: Insights for Empowering Future Crops"

description: The dataset contains raw data and the script associated to the publication of Billaud et al. (2024) "Unveiling Pepper Immunity’s Robustness to Temperature Shifts: Insights for Empowering Future Crops" published by William BILLAUD, Judith HIRSCH, Valentin RIBAUT, Lucie TAMISIER, Anne MASSIRE, Marion SZADKOWSKI, Félicie LOPEZ-LAURI, Benoît MOURY, Véronique LEFEBVRE. This study aimed at proposing estimators of the robustness of immunity in pepper (Capsicum annuum L.). We examined robustness of the mean of immunity and robustness of the variation of immunity, as well as the deviation from the orthogonal regression (〖ODR〗_(S_i )) estimator, delivering a total of nine quantitative robustness estimators. We characterized the immunity of an INRAE core collection of accessions representative of pepper (Capsicum annuum L.) natural diversity, to two major pathogens, the oomycete Phytophthora capsici Leon. and potato virus Y. For each pathogen, the immunity of accessions was measured in two environments contrasted for temperature. The results showed that for each type of robustness and each pathogen, the impact of temperature change on immunity varied between accessions. The robustness estimators proved to be complementary and differed in terms of their heritability and ability to discriminate between accessions. A positive and significant correlation was observed between immunity and robustness. There was no significant relationship between the robustness of immunity to the two pathogens but some accessions showed both high immunity and high robustness against both pathogens. These results justified the need to consider both immunity and its robustness to environmental variations in order to select varieties adapted to current and future climate change. Robustness is also an important component of the value of sustainable cultivation and use, and should be considered when registering future varieties.
DOI: 10.57745/3oadui
title: SEAT2D-GNN: A Seat-Inspired Elastodynamics Database with Geometric and Topological Variations on 2D Meshes, e.g. for Graph Neural Network Applications

description: Overview This database contains results from linear elastodynamic simulations performed on 2D “seat” geometries. The dataset comprises 1,800 examples generated using random configurations of holes (round or square), with six different parameterizations (1 round hole, 2 round holes, 3 round holes, 1 square hole, 2 square holes, 3 square holes). The geometries are grouped by sets of six in ascending order of their index. All simulations were carried out with linear T3 finite elements and time integration was done using the Newmark scheme. Matlab Files: seat_lin_i.mat Each seat_lin_i.mat file contains the following data: M: Mass matrix K: Stiffness matrix F: Time-dependent loading term ddlu: Boolean indices indicating free degrees of freedom lt: List of 400 time steps Uref: Primal solution field (displacements) over time The equation solved in these simulations is: M d2Uref/dt2 + K Uref = F. Python Reader: transfer_mat2py.py A Python script, transfer_mat2py.py, is provided to facilitate reading the .mat files within a Python environment. This script allows users to import the simulation data (mass matrix, stiffness matrix, loading terms, etc.) directly into their Python workflows. Python Files: seat_i.pt Each seat_i.pt file is stored in the torch_geometric.data “graph” format and contains: Node features: X: Node positions and local contributions of the stiffness matrix N: Node type (Dirichlet, non-zero Neumann, or zero Neumann) F: Loading term at each node Edge features: edge_attr: Stiffness matrix contributions associated with each edge edge_index: Graph connectivity Output fields: s1: First spatial mode of the primal solution s2: Second spatial mode of the primal solution s3: Third spatial mode of the primal solution This dataset can be used to develop and benchmark methods for reduced-order modeling, machine learning approaches in computational mechanics, or any application that requires detailed finite element simulations of linear elastodynamics on heterogeneous 2D geometries.
DOI: 10.57745/6rig38
title: Replication Data for : Influence of mechanical stress on biomass allocation in three species with contrasting posture control mechanisms: : Pachira aquatica, Sextonia rubra and Simarouba amara.

description: Data from experiments described in the paper : Influence of mechanical stress on biomass allocation in three species with contrasting posture control mechanisms submitted on March 2024 Abstract Context: All trees need a motor system to correct their position achieved through the generation of asymmetric tensile stress around the stem, leading to active bending. In angiosperms, depending on the species, tensile stress is generated either in wood (tension wood), in bark or in both. Aims: Here, we investigated how gravitropic stimuli (tilted stems without any movement) may affect growth and biomass allocation and whether this process depends on the posture control mechanism of the species. Methods: Tree growth kinetics, final biomass allocation and wood and bark proportion, localisation and density were measured on young tilted plants and straight plants as controls. Pachira aquatica, Sextonia rubra and Simarouba amara were selected according to their motor system located respectively within bark only, wood only or both wood and bark. Results: In response to tilting, trees from the three species increased their diameter and decreased their slenderness, but the total biomass (including stem and roots) was not different than that in the control trees, suggesting that reaction to artificial tilting does not imply a specific cost for the plant. However, the species exhibited strong differences in growth kinetics, in the amount and organisation of the tissues or in biomass allocation to different organs (root vs shoot, wood vs bark), adapted to the specificity of the posture control mechanisms and improving their motor function. Conclusion: Whatever the posture control mechanism, uprighting does not modify total biomass invested but its repartition in the organs is strongly modified according to the efficiency of the mechanisms.
DOI: 10.57745/6gcpx6
title: PROspective - organic waste products physicochemical dataset

description: Organic waste products (OWP) physicochemical dataset from the PROspective's long-term field experiment. // The PROspective's field experiment is a randomised block experiment divided into 2 sub-devices “With_N” and “Without_N” including 24 plots of 10 m × 9 m in 4 blocks of replicates and a fifth block devoted to following of the nitrogen dynamic with bare plots or control plots without mineral fertilization. The following organic waste products are randomly distributed within each block: Sewage sludge (SLU), Co-compost of sewage sludge with green waste and wood chips (GWS), Co-compost of the home-sorted fermentable fraction of municipal solid waste and green waste, also called biowaste compost (BIOW), Farmyard manure from a dairy farm (FYM), Compost of farmyard manure (CFYM), No organic amendment (control, or CN). // Two phases were carried out during 2000-2019 as presented in the table in attached file (PROspective_Experimental_treatments_FR_EN), with the treatments randomly distributed in the 2 sub-devices; with additional biowaste digestate (DIG) applied from 2015 in the sub-device “without_N.
DOI: 10.57745/bdh4cs
title: Phylogenetic analysis showing the relationships of Pseudomonas sp. LMG 33091 among type strains of validly named species of the Pseudomonas genus.

description: Phylogenetic tree based on partial 16S rRNA gene sequences showing the relationships of Pseudomonas sp. LMG 33091 among type strains of validly named species of the Pseudomonas genus. In Newick format.
DOI: 10.57745/4zwxyh
title: Celluloses and konjac glucomannan assemblies TD-NMR, solid-state NMR and Dynamic Vapor Sorption datasets

description: We provide the original data of TD-NMR, ss-NMR and DVS data in .dps, topspin and .xls formats, respectively, in such a way that different authors repeat our processing with different parameters.
DOI: 10.57745/5od0dx
title: Atipical_sequences_oilseed_rape_pathogens

description: Barcode sequences aiming at differenciation of a collection of oilseed rape pathogens
DOI: 10.57745/5reptp
title: Dataset for Multiparameter growth-performance monitoring of Holstein dairy heifers fed on moderate- or high-energy feeding plans from birth to puberty

description: Comparison of growth rate and age at puberty between two groups of Holstein dairy heifers fed according to two different feeding plans; monitoring of changes in basic morphometric, ultrasound and metabolic indicators from birth to 12 months and from birth to 400kg.
DOI: 10.57745/7ka2ug
title: In-depth characterization of 4 raw carbon nanomaterials: multi-walled (MWCNT) and double-walled carbon nanotubes (DWCNT), few-layer graphene (FLG) and graphene nanoplatelets (GNP)

description: Double-walled carbon nanotubes (DWCNTs), multi-walled carbon nanotubes (MWCNTs), few-layer graphene (FLG) and graphene nanoplatelets (GNPs) have been characterized by several complementary characterization techniques : transmission electron microscopy (TEM), Raman spectroscopy, X-ray photoelectron spectroscopy (XPS), Fourier-transform infrared spectroscopy (FTIR), thermogravimetric analysis (TGA) under air and TGA coupled with a mass spectrometry (TGA-MS) under He. The dataset provides morphological, structural and chemical characterizations of each studied carbon nanomaterial. The used operating parameters for the sample preparation prior to analysis and the experiment conditions are similar for each studied carbon nanomaterials which allows a robust result comparison among the four studied samples.
DOI: 10.57745/7wgcxp
title: Decision to adhere to adapted physical activity program in a mountain environment: A 2PAP model

description: The objective of the present study was to investigate individuals' decision to adhere to adapted physical activity (APA) program using the Push, Pull, Anti-Push, Anti-Pull (2PAP) model. To this end, we performed an exploratory qualitative study and a quantitative study. Thirty adults participated in the qualitative and 400 adults took part in the quantitative study. In this latter, we performed first a parallel analysis of the data from each of the four dimensions (push, pull, anti-push, anti-pull) and secondly we conducted a confirmatory factor analysis. The results showed that the decision-making to adhere to a prescription-based APA program in a mountain environment were built around four dimensions from the 2PAP: push (12 items), pull (11 items), anti-push (7 items), and anti-pull (10 items). To promote APA programs in the mountain environment, healthcare facilities need to focus their communication on the physical and mental benefits that the mountain environment brings to patients. However, this communication must also reassure patients of their fears in relation to this environment, which may be seen as more restrictive, particularly for people with pathologies.
DOI: 10.57745/a62bmv
title: Mitochondrial translation initiation in plants is mediated by a unique mTRAN-mRNA interaction mechanism

description: this dataset is the diffsegR analysis of the RIP-seq data from the publication "Mitochondrial translation initiation in plants is mediated by a unique mTRAN-mRNA interaction mechanism". It contains the R script used to perform the analysis and the input bam files. The output folders are provided as zipped files.
DOI: 10.57745/a8jbwj
title: In-depth characterization of 4 carbon nanomaterials (MWCNT, DWCNT, FLG, GNP) chemically modified by oxidation with HNO3

description: Double-walled carbon nanotubes (DWCNTs), multi-walled carbon nanotubes (MWCNTs), few-layer graphene (FLG) and graphene nanoplatelets (GNPs) were chemically modified by refluxing in HNO3 at 3 M for 24 h rigorously in the same way. The oxidized samples have been characterized by means of several complementary characterization techniques : transmission electron microscopy (TEM), Raman spectroscopy, X-ray photoelectron spectroscopy (XPS), Fourier-transform infrared spectroscopy (FTIR), thermogravimetric analysis (TGA) under air and TGA coupled with a mass spectrometry (TGA-MS) under He. The dataset provides morphological, structural and chemical characterizations of the four chemically treated carbon nanomaterials.
DOI: 10.57745/6v57ic
title: Data for article "Validation of a scanning technique with minimal compression for measuring muscle volume with freehand 3D ultrasound"

description: This dataset includes: - 3D segmentations for 4 muscles of the right lower limb (rectus femoris, vastus laterialis, tibialis anterior, gastrocnemius medialis) from 15 healthy volunteers. - Each muscle was scanned with 3 levels of compression: standard compression, minimal compression, and gel pad. - Tables with the volume calculations using 3D Slicer for each segmentation.
DOI: 10.57745/aqunja
title: PACIFIC dataset_main figures

description: The aim of the PACIFIC study is to compare 46 AIEC bacteria isolated from Crohn's patients in France and Hong Kong between 2017 and 2022. Their adhesion and invasion to intestinal epithelial cells phenotype was tested. Colonisation of the gut of a mouse model mimicking Crohn's disease by 4 strains isolated in France and 4 strains isolated in Hong Kong was compared. The sequencing of 46 strains was carried out and the raw data used for the genomic analyses is compiled in a file. The isolated strains were also tested for antibiotic resistance and sensitivity to a cocktail of phages.
DOI: 10.15468/dl.rxsbgt
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podarcis siculus pelagosae (Bedriaga, 1886)"
 ]
}

 The dataset includes 18 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117199-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.utb7vy
title: Occurrence Download

description: A dataset containing 11803 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Amazona oratrix Ridgway, 1887"
 ]
}

 The dataset includes 11803 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068073-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dop917
title: Occurrence Download

description: A dataset containing 11113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Correa reflexa (Labill.) Vent.",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11113 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039552-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.va4xjk
title: Occurrence Download

description: A dataset containing 149074 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Poa annua L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "Year is greater than or equal to 1980",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 100",
 {
 "not" : {
 "CoordinateUncertaintyInMeters" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 149074 records from 751 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015739-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.