cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25504/fairsharing.meh9wz
title: FAIRsharing record for: Acytostelium Gene Database
title: null

description: This FAIRsharing record describes:  Genome and transcriptome database of Acytostelium subglobosum
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.pwgf4p
title: FAIRsharing record for: Japanese Genotype-phenotype Archive
title: JGA

description: This FAIRsharing record describes:  The Japanese Genotype-phenotype Archive (JGA) is a service for permanent archiving and sharing of all types of individual-level genetic and de-identified phenotypic data resulting from biomedical research projects. The JGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the JGA. Once processed, all data are encrypted.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.j4ebq1
title: FAIRsharing record for: MitoCheck
title: MitoCheck

description: This FAIRsharing record describes:  MitoCheck aims to integrate information on cellular function of human genes while giving access to supporting information such as microscopy images of phenotypes.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.6wf1zw
title: FAIRsharing record for: Image Data Resource
title: IDR

description: This FAIRsharing record describes:  The Image Data Resource (IDR) is a public repository of image datasets from published scientific studies, where the community can submit, search and access high-quality bio-image data. It follows the Euro-BioImaging/ELIXIR imaging strategy using the OMERO and Bio-Formats open source software built by the Open Microscopy Environment. Deployed on an OpenStack cloud running on the EMBL-EBI’s Embassy resource, it includes image data linked to independent studies from genetic, RNAi, chemical, localisation and geographic high content screens, super-resolution microscopy, and digital pathology.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.e5y0j0
title: FAIRsharing record for: Clinical Knowledgebase
title: JAX-CKB

description: This FAIRsharing record describes:  The Jackson Laboratory Clinical Knowledgebase (CKB) is a semi-automated/manually curated database of gene/variant annotations, therapy knowledge, diagnostic/prognostic information, and clinical trials related to oncology. CKB not only contains current information on the protein effect of somatic gene variants, but also connects the variant to targeted therapies through an efficacy evidence annotation. In addition, CKB captures clinical trial patient eligibility criteria that include genomic alterations (genotype-specific). The public access version of CKB encompasses 82 commonly known driver genes. Users can search CKB via gene, gene variants, drug, drug class, indication, and clinical trials. The web-based version of CKB is designed to interrogate the knowledgebase for specific data attributes while also enabling a robust browse like feature when the desired content is unknown.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.g63c77
title: FAIRsharing record for: Curie Image Database
title: CID

description: This FAIRsharing record describes:  In addition to data used in on-going collaborations, this database host images from France Bio Imaging microscopy facility with public access either associated to publications, either that make interest from an image processing point of view (such as challenges for developpers or for use in metrology). This resource requires a log in account, however some projects are available with a guest account.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.tf3mhc
title: FAIRsharing record for: Virtual Parts Repository
title: VPR

description: This FAIRsharing record describes:  The Virtual Parts Repository (VPR) is a repository of reusable, modular and composable models of biological parts.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.2y6rkq
title: FAIRsharing record for: Advanced Ecological Knowledge and Observation System
title: TERN AEKOS

description: This FAIRsharing record describes:  The Advanced Ecological Knowledge and Observation System from the Terrestrial Ecosystem Research Network (TERN AEKOS) focuses on ecological plot data that are generated by land-based ecosystem projects that use survey, monitoring and experimental studies to collect raw data on plants, animals (including traits) and their immediate environments at the same location. Plot data are observations sampled by using scientific techniques such as quadrants, grids, transects, animal trap arrays and other structured sampling techniques.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.d6xz90
title: FAIRsharing record for: Structual and functional MRI data
title: MAFIL

description: This FAIRsharing record describes:  MRI data for brain and mind research incl. simultaneous recording of EEG and electrophysiology. This resource has restricted access.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.we2r5a
title: FAIRsharing record for: SSBD: a platform for Systems Science of Biological Dynamics
title: SSBD

description: This FAIRsharing record describes:  SSBD is a database that collects and shares quantitative biological dynamics data, microscopy images, and software tools. SSBD provides a rich set of resources for analyzing quantitative biological data, such as single-molecule, cell, and gene expression nuclei. Quantitative biological data are collected from a variety of species, sources and methods. These include data obtained from both experiment and computational simulation.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.j766zb
title: FAIRsharing record for: Broad Bioimage Benchmark Collection
title: BBBC

description: This FAIRsharing record describes:  The Broad Bioimage Benchmark Collection (BBBC) is a collection of freely downloadable microscopy image sets. Researchers are encouraged to use these image sets as reference points when developing, testing, and publishing new image analysis algorithms for the life sciences. In addition to the images themselves, each set includes a description of the biological application and some type of "ground truth" (expected results).
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.pd7q00
title: FAIRsharing record for: SYSGRO: A resource of fission yeast phenotypic data & analysis
title: SYSGRO

description: This FAIRsharing record describes:  SYSGRO is a high throughput/high-content microscopy fission yeast phenotype database from the Carazo Salas Lab in the University of Cambridge UK, funded thanks to a EU ERC Starting Grant. It contains cell shape, microtubule & cell cycle progression computational phenotypes for 3004 non-essential gene knockout cell lines. It is the first multi-phenotypic microscopy profiling functional genomics resource for any organism/
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.88kgtp
title: FAIRsharing record for: Bioimaging
title: Bioimg

description: This FAIRsharing record describes:  Bioimg is a central storage server for all the imaging data acquired at the Imaging Units at theWeizmann Institute of Science (WIS) together with instruments of Research Groups in WIS. The data is automatic and incrementally copied to Bioimg several times a day. Metadata can be added to the files to track experiment's information and important notes and to enable efficient search. The stored data is available campus-wide over the network, and can be shared with other users. The Bioimg is available for other Institutions. FAIRsharing does not know the current status of this resource, and we have therefore marked its status as Uncertain. Please contact us if you have any recent information on this resource.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.dnxzmk
title: FAIRsharing record for: Synapse
title: Synapse

description: This FAIRsharing record describes:  Synapse is a collaborative research platform that allows individuals and teams to share, track, and discuss their data and analysis in projects. Synapse allows researchers to share and describe data, analyses, and other content. Data and analyses can be stored in many types of locations, including private servers, local hard drives, or cloud storage. Synapse provides a common interface to describe these data or analyses, where they come from, and how to use them. Synapse also provides mechanisms for adding and retrieving data, analyses, and their respective descriptions.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.9jpd3v
title: FAIRsharing record for: Berkeley Drosophila Transcription Network Project
title: BDTNP

description: This FAIRsharing record describes:  A database containing the expression patterns of hundreds of Drosophila genes in 3D at cellular resolution.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.b9td4r
title: FAIRsharing record for: Image Storage Platform for Analysis Management and Mining
title: ISPAMM

description: This FAIRsharing record describes:  A database system for storing Microscopy data for the KU Leuven Live Science Research group.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.mrfyxv
title: FAIRsharing record for: Haeckaliens
title: Haeckaliens

description: This FAIRsharing record describes:  Haeckaliens is a collection of 3D datasets and reconstructions of embryos obtained with the open-source optical tomography scanner "OPenT" .
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.nv1n5s
title: FAIRsharing record for: Liverpool CCI OMERO
title: null

description: This FAIRsharing record describes:  A repository of image / SPM data to support users of the Centre for Cell Imaging, University of Liverpool.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.erhnxs
title: FAIRsharing record for: LCI facility data repository
title: null

description: This FAIRsharing record describes:  This database is in development and as yet does not have a description available .
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.j9mm09
title: FAIRsharing record for: Atlases - Pathology images
title: null

description: This FAIRsharing record describes:  A collection of high resolution histological images from contributors across the Czech Republic.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.7ynng
title: FAIRsharing record for: Collection of Anti Microbial Petides R3
title: CAMP R3

description: This FAIRsharing record describes:  CAMPR3 (Collection of Anti-Microbial Peptides) has been generated to enhance research into AMP families. The collection is compatible with well-known databases such as PubMed and Uniprot with information like sequence, protein definition, accession numbers, structures as well as relevant organisms. Making this database a useful tool in AMP studies.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.xypv6g
title: FAIRsharing record for: ViBE-Z: The Virtual Brain Explorer for Zebrafish
title: ViBE-Z

description: This FAIRsharing record describes:  ViBE-Z, the Virtual Brain Explorer for Zebrafish is an imaging and image analysis framework for virtual colocalization studies in larval zebrafish brains, currently available for 72hpf, 48hpf and 96hpf old larvae. ViBE-Z contains a database with precisely aligned gene expression patterns (1um 3 resolution), an anatomical atlas, and a software. This software creates high-quality data sets by fusing multiple confocal microscopic image stacks, and aligns these data sets to the standard larva.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.yvhq61
title: FAIRsharing record for: Educational and Research Picture Archiving and Communication System
title: null

description: This FAIRsharing record describes:  The core of the system is tailored PACS (Picture Archiving and Communication System). It forms the basis for educational and research applications such as the development of databases of case studies describing the treatment of real patients. Images appropriate for teaching or research purposes are made anonymous. This database is in Czech and has restricted access.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.dq46p7
title: FAIRsharing record for: Life Science Database Archive
title: LSDB Archive

description: This FAIRsharing record describes:  If a database is inadequate in terms of its description, unclear with respect to the terms of use, or is not downloadable, it may not be fully used, cited or rightly acknowledged by the (research) communities. This is even true for databases with high-quality datasets. The Life Science Database Archive maintains and stores the datasets generated by life scientists in Japan in a long-term and stable state as national public goods. The Archive makes it easier for many people to search datasets by metadata (description of datasets) in a unified format, and to access and download the datasets with clear terms of use (see here for detailed descriptions). In addition, the Archive provides datasets in forms friendly to different types of users in public and private institutions, and thereby supports further contribution of each research to life science.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.rkwr6y
title: FAIRsharing record for: Oxford University Research Archive
title: ORA

description: This FAIRsharing record describes:  The Oxford University Research Archive (ORA) is the institutional repository for the University of Oxford. ORA was established in 2007 as a permanent and secure online archive of research materials produced by members of the University and is managed by the Bodleian Libraries. ORA aims to provide access to the full text of as much of Oxford's academic research as possible, including articles, conference papers, theses, research data, working papers and posters. Digital object identifiers (DOIs) can be assigned to items in the repository for citation and attribution.

Making materials open access removes barriers that restrict access to research, allowing for free dissemination of full text content, available to anyone with Internet access. ORA promotes and encourages the sharing of the scholarly output produced by the members of the University that have been published under open access conditions, whilst additionally supporting University compliance with research funder policies and assessment. It is a core service of the library and is prioritised due to its central importance to the REF and funder compliance.

description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.81ettx
title: FAIRsharing record for: Bioconductor
title: Bioc

description: This FAIRsharing record describes:  Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.txcn6k
title: FAIRsharing record for: RDF Portal
title: RDF Portal

description: This FAIRsharing record describes:  The RDF Portal provides a collection of life science datasets in RDF (Resource Description Framework). The portal aims to accelerate integrative utilization of the heterogeneous datasets deposited by various research institutions and groups. In this portal, each dataset comes with a summary, downloadable files and a SPARQL endpoint.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.6s749p
title: FAIRsharing record for: Wikidata
title: Wikidata

description: This FAIRsharing record describes:  Free knowledge database project hosted by Wikimedia and edited by volunteers.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.