cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15454/kmnr6r
title: Depth distribution of soil carbon age inferred from natural 13C labelling meta-analysis

description: Depth profiles soil organic carbon turnover estimated by the natural 13C labelling technique. Data have been collected from published articles plus original data (meta-analysis). Dataset contains raw primary data, calculated data and ancillary information analysed and generated during the study: "Atmosphere-soil carbon transfer as a function of soil depth"
DOI: 10.15454/kwwcgv
title: PlantSyntenyViewer Wheat dataset submission file

description: Submission file of Wheat dataset in PlantSyntenyViewer
DOI: 10.15454/lv9zrw
title: Etude 4pour1000 : Données modèle STICS

description: Données issues des simulations générées par le modèle STICS dans le cadre de l'étude 4p1000.
DOI: 10.15454/jkzapx
title: Species plots: Soil and Climate data

description: The soil and climate data stored here are collected at 5 replicate plots (but pooled per altitude) every 100 m increase in altitude between 1400 and 2400 m a.s.l. at the Belledonne Massif, FR.
DOI: 10.15454/jnipx5
title: Socioeconomics and Grain-Legumes WoS DataSet 1980-2018

description: The text file corresponds to the search query capturing the main socioeconomic research theme on grain-legumes (both soya and pulses, see Species Grain-Legumes WoS dataset) to be applied on the WoS (Web of Knowledge). This search query is restricted to the main types of scientific literature documents, namely the types: article, book, book chapter, and review. This translated into the query DT = ("Article" OR "Book" OR "Book Chapter" OR "Review"); the time range selected is 1980-2018 (PY = "1980-2018"). Socioeconomic theme refers to various subjects such as funding of work on breeding activities, farmers’ production choices, feed practices and business, consumer behaviors, market functioning, policies, etc. UT file corresponds to the results of this search query (UT refers to a WoS unique identifier for each record retrieved) after a post-processing step which eliminated the records captured by the Wos KeyWord Plus : ie, the UT file correspond to records containing terms of the search query only in title, abstract, and (regular) keywords. See the related publication for more information.
DOI: 10.15454/jwonrg
title: Optimising reactive disease management using spatially explicit models at the landscape scale

description: R code associated with the book chapter "Optimising reactive disease management using spatially explicit models at the landscape scale". The R code describes a simple landscape-scale epidemic model to illustrate how dispersal and model structure can affect epidemic dynamics, as well as to show how performance of a simple reactive control can be assessed.
DOI: 10.15454/ktu27r
title: Diffusivity and solubility of CO2 in dense solid food products - Diffusivity of CO2 identified in this work and taken from the literature

description: value unavailable
DOI: 10.15454/kxpsuy
title: Transposable Elements in the Genome Umbilicaria pustulata

description: Contient les données issues de l'annotation des éléments transposables (ETs) du génome Umbilicaria pustulata (accession VXIT01000000), un ascomicèce en association symbiotique avec une algue verte du genre Trebouxia
DOI: 10.15454/kzxfnp
title: Dates minimales et maximales de semis et de récolte du blé tendre implanté sur l’installation expérimentale de Mirecourt de 1971 à 2020

description: Ce jeu de données recense les dates minimales et maximales de semis et de moisson du blé tendre (Triticum aestivum) sur le domaine expérimental INRAE de Mirecourt. Ces données couvrent la période 1971 – 2020. De 1971 à 2003, les expérimentations sont conduites en agriculture conventionnelle. Depuis 2004, les expérimentations sont conduites intégralement en agriculture biologique.
DOI: 10.15454/l2lihd
title: Frimouss Eggplant

description: Fruit features : Fruit growth has been measured from anthesis to harvest on plants with regular crop load. The anthesis date have been observed in order to describe the data collected according to days and degree-days from anthesis. Fruit growth has been monitored using non-destructive measurements that measure fruit dimensions (diameters, length) and using destructive sampling to estimate the fruit fresh and dry mass accumulation. Metabolites : Biomass compounds and accumulated metabolites that constitute the major carbon sinks have been quantified and their contents expressed on fresh- and dry weight bases. Total proteins, nucleic acids and starch have been quantified via spectrophotometric or fluorimetric measurements after specific extraction, preparation and calibration. Culture location : INVENIO, Ste Livrade, France
DOI: 10.15454/ly4vkc
title: Spurious phase correction in rapid metabolic imaging

description: This Data file contains experiments used to validate the theory explained in the submitted paper entitled : Spurious Phase Correction in Rapid Metabolic Imaging written by : Nour EL SABBAGH(1,2,3), Carine CHASSAIN(1,2,3), Hélène RATINEY(4), Guilhem PAGES(1,2), Jean-Marie BONNY(1,2). (1) INRAE, UR QuaPA, F-63122 Saint-Gènes-Champanelle, France (2) AgroResonance, INRAE, 2018. Nuclear Magnetic Resonance Facility for Agronomy, Food and Health, doi: 10.15454/1.5572398324758228E12 (3) Université Clermont Auvergne, CHU, CNRS, Clermont Auvergne INP, Institut Pascal, F-63000 Clermont-Ferrand, France. (4) Université Lyon 1, CNRS, Inserm, INSA Lyon, UCBL, CREATIS, UMR5220, U1294, F-69621 Villeurbanne, France Abstract: Rapid multi-shot MRSI sequences, like IDEAL spiral, require the acquisition of several datasets using optimized sampling in the time domain to reconstruct metabolite maps. Each unitary scan consists of a selective slice (2D) or slab (3D) excitation followed by an evolution time and then the acquisition of the spatially encoded signal. It is critical that the phase variation during the evolution time for each scan is only dependent on chemical shifts. In this paper, we highlight that the phase may depend on either the excitation (fe) or the reception (fr) frequency depending on where the switch from the first to the second frequency is performed in the pulse sequence. To override this, we propose two types of solutions. The first one is based on post-processing signal correction while the second one consists of performing the frequency switch at an appropriate position in the pulse sequence. In order to illustrate this issue, we used the IDEAL spiral method applied to a 13C phantom. The first application, which was published in the paper, was a general case for multiple metabolites (multiple spins) : * 13C Metabolic Imaging using IDEAL spiral. The second one, which was not published, deals with only 1 metabolite (1 spin) : * 1H High Resolution B0 map. Each application has a folder containing: * a READ ME file for a detailed description, * a Data folder containing the experiments dataset, * a Matlab folder containing the script used.
DOI: 10.15454/mlrdrz
title: RPG complété 2018 département 16

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 16. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/lswrdg
title: CIRCASA DELIVERABLE D3.1: "Strategic Research Agenda (SRA) on Soil Carbon"

description: Research priorities for the alignment of International Research on SOC sequestration in agriculture.
DOI: 10.15454/lfmp64
title: Angelica microsatellite genotype for marker development

description: Genpop Angelica microsatellite data for marker development paper Revardel Lepais 2021 ; pop1 = A. sylvestris Aurice (40) (38 individus) ; pop2 = A. sylvestris Saucats (33) (30 individus) ; pop3 = A. sylvestris Vosges (68) (30 individus) ; pop4 = A. heterocarpa Rézé (44) (40 individus) ; pop5 = A. heterocarpa Garonne (33) (38 individus) ; pop6 = A. razuli bagnères (33) (50 individus) ; pop7 = A. archangelica Hambourg (3 individus).
DOI: 10.15454/lkzjr4
title: PFOS and PFOA concentrations in freshwater gammarids (caged) and wild fish from 15 continental sites (2018)

description: This dataset reports concentrations of two perfluoroalkyl acids (perfluorooctanoic carboxylic acid - PFOA -; perfluorooctane sulfonic acid - PFOS -) in caged gammarids (Gammarus fossarum) and wild fish (chub Squalius cephalus; barbel Barbus barbus; roach Rutilus rutilus) from 15 sites in French rivers. Gammarids were collected at a pristine site, sorted in order to select male individuals of about 2 mm size, and exposed in the field for three weeks, without food added (AFNOR standard XP T 90-721 (2019) Encagement in situ de gammares pour la mesure de la bioaccumulation de substances chimiques). This was repeated three times (June, September and November) in 2018. Fish were caught by electrofishing between July and November, 2018. Each fish sample is composed of several individualsof the same size class. PFOS and PFOA were analyzed according to Aquaref (2014 - Composés perfluorés (chaine linéaire en C8) - Méthode d'analyse dans les biotes). The dataset comprises 90 gammarid records, 60 fish records, and quantification limits and control/blank samples.
DOI: 10.15454/lu5qht
title: TREEPEACE project website

description: TREEPEACE project website There are widespread concerns that trees, due to their long life-span, are not able to cope with the rapid ongoing climate change. While many studies have so far investigated potential impacts of climate change on forests, much less attention has been given to the potential evolutionary responses of tree populations. However there is a large body of evidence stemming from experimental evolutionary genetics showing that adaptive differentiation has extensively occurred during past environmental changes. TREEPEACE challenges these views and explores the pace at which evolutionary change has taken place during past gradual and under current rapid environmental change. The static website gives information on publications, tools, outreach, activities and resources. The website is regularly supplemented.
DOI: 10.15454/m5p3lm
title: Weed density of 7 major weeds in the long-term integrated weed management cropping system experiment of Dijon-Epoisses (2000-2017)

description: The dataset contains the density (plants/m²) of 7 weed species (Alopecurus myosuroides, Chenopodium album, Solanum nigrum, Polygonum convolvulus, Aethusa cynapium, Galium aparine, Polygonum aviculare) observed in 90 zones (10 fields x 9 sub-plots per field) over 17 years (2000-2017), in the integrated weed management cropping system experiment of the Dijon (FR) INRAE experimental farm. Weed density was assessed with four 0.36m² quadrats per zone (here averaged), 1 to 5 times per crop season but the dataset contains only the latest weed counting, which was carried out around crop flowering. Thus, 90% of the data represents weed counts made after weeding operations (the remaining 10% in absence of weed control the given year). These seven species represent the most common weeds of the study site, and differ according to their germination period and seed production potential.
DOI: 10.15454/mghary
title: IPMWorks H2020 No. 101000339 – IPM Resource Toolbox Survey raw data

description: IPMWorks H2020 No. 101000339 – IPM Resource Toolbox Survey raw data contains the anonymous responses of 113 agricultural stakeholders. Information on the country of residence, main crop of focus, their role in agriculture, whether or not they are directly responsible for IPM decision making on farm (if so, whether they currently implement IPM, where they get information about resources from, if they trust online resources, and whether they are working towards holistic IPM strategy), what they think an online IPM resource toolbox should be, the resources it should contain, and the preferred format of the toolbox and resources within it
DOI: 10.15454/mnekpc
title: The impact of melting conditions on poly[R-3-hydroxybutyrate-co-(R-3-hydroxyvalerate)] structure, crystallization behaviour and mechanical properties

description: Raw data related to figures shown in the paper "The impact of melting conditions on poly[R-3-hydroxybutyrate-co-(R-3-hydroxyvalerate)] structure, crystallization behaviour and mechanical properties" by Julie Bossu, Nicolas Le Moigne, Philippe Dieudonné, Loïc Dumazert, Valérie Guillard, Hélène Angellier-Coussy
DOI: 10.15454/kew1gk
title: Data from extensive comparative measurements of conventional, conservation and organic agricultures in Southwestern France

description: Observational and experimental data of crop pests, crop pest natural enemies, soil sensitivity to erosion, crop productivity, pathogenic fungal infection and root colonization by mycorrhiza in conventional, conservation and organic agricultures near Toulouse, France.
DOI: 10.15454/lezzcy
title: Life history traits, metabolic status and reproductive success data for brown trout in an experimental channel

description: Dataset on brown trout (Salmo trutta) life history, metabolic status and reproductive success used in a control experiment of reproduction, to study the impact of water flow stochasticity on reproductive investment and reproductive success. Experiment A and B1 are under constant water flow. Experiment B2 is under stochastic water flow. In A, only wild fish from river Bastan, France, are placed in the channel. FOr experiments B1 and B2, wild fish from river Bastan, France , and river Urumea, Spain, are placed in sympatry in the channel. At the beginning and end of the experiment and therefore the reproduction period (duration: 2 months), fish are measured for a set of traits, and 2 months after they are removed from the channel and released in their river of origin, emerging fry are sampled and genetically assigned to their potential parents.
DOI: 10.15454/ligcqe
title: NAF - The evolution of leaf function during development is reflected in profound changes in the metabolic composition of the vacuole

description: Research project:TMT1 et TMT2 : deux transporteurs tonoplastiques de sucres impliqués dans l’expansion de la vacuole et le grandissement du fruit de tomate. Alice destailleur PhD thesis submitted to the doctoral school of Science de la Vie et de la Santé (speciality: Plant biology) from the University of Bordeaux the 31th March 2021. Beginning of the project: October 2017 - End of the project: March 2021. Fundings: Analytics were supported by MetaboHUB (ANR-11-INBS-0010) and PHENOME (ANR-11-INBS-0012) projects.
DOI: 10.15454/m9pwcw
title: Projet Artisols - Atlas cartographique - Occitanie

description: Le projet ArtiSols, soutenu par la Région Occitanie et le Fonds Européen de Développement Régional (FEDER), s’inscrit dans une démarche d’évaluation et de qualification du processus d’artificialisation des sols en région Occitanie. Piloté par INRAE (UMR TETIS), ce projet rassemble des établissements de recherche (INRAE, CNRS, INPT), des services de l’État (DRAAF Occitanie) et de la Région Occitanie (Direction de l’Aménagement, du Foncier et de l’Urbanisme), et les aménageurs BRL et CACG. L'atlas cartographique offre un aperçu des données produites et traitées dans le cadre de ce projet. Les données qui y sont présentées sont le résultat de recherches méthodologiques de cartographie des espaces artificialisés.
DOI: 10.15454/mehmad
title: Données phénologiques de pêches et nectarines - Projet Phénoclim / Phenological data Peach - Phenoclim project

description: Ce document est composé d'un tableau Excel comprenant le détail des codes phénologiques selon l'échelle BBCH, le sigle de la licence ainsi que les observations phénologiques de plusieurs variétés de pêchers et de nectariniers. Ces observations ont été faite à l'INRAE de Bordeaux et s'inscrivent dans le projet de Phénoclim.
DOI: 10.15454/n9gypz
title: RPG complété 2019 département 19

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 19. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15468/dl.5br52u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enteromius gurneyi (Günther, 1868)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.0214 -34.0501,25.5395 -34.1098,25.5395 -32.9007,20.509 -32.9007,20.509 -34.5676,20.524 -34.555,20.8859 -34.5419,20.9606 -34.4398,21.2995 -34.5131,21.5296 -34.4338,21.8696 -34.4439,22.0323 -34.2835,22.221 -34.2428,22.2566 -34.1304,22.5993 -34.0741,22.9652 -34.1674,23.4069 -34.1858,23.4955 -34.0792,23.6056 -34.0563,24.8471 -34.2877,24.9447 -34.2397,25.0214 -34.0501))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026450-250525065834625/datasets/export for details.
DOI: 10.15454/ktv4ng
title: Annotation data about Multi Criteria Assessment Methods used in Forest, Grassland and Freshwater Ecology: the French National Institute for Agricultural Research (INRA-EFPA) experience

description: This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers belonging to the Forest, Grassland and Freshwater Ecology department.
DOI: 10.15454/lcu6oz
title: Raw data and associated scripts of a study dedicated to forest biomass harvest and wood ash application

description: This dataset contains all raw data and associated scripts of a study dedicated to forest biomass harvest and wood ash application. It contains data about soil chemistry, tree nutrient composition, and vegetation growth.
DOI: 10.15454/m6xrou
title: RPG complété 2018 département 58

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 58. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/mmzdd3
title: Soil, root and liltter traits - Field study

description: Soil physical and chemical properties, and root and litter physical and chemical traits along a land-use gradient at Wytham, Oxfordshire, southern England (1◦ 20 ′ W, 51◦ 47 ′ N)
DOI: 10.15454/no7azk
title: RPG complété 2018 département 88

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 88. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/not2lh
title: Enriched gene ontology terms in upregulated genes at the transition from eggs to J2

description: Analysis of differentially represented (over and under) Gene Ontology (GO) terms in the genes showing significant up-regulation at the transition between the eggs and the pre-parasitic J2 stage. GO over and under representation of terms are according to the hypergeometric test as implemented in the GofuncR Bioconductor package (https://www.bioconductor.org/packages/release/bioc/html/GOfuncR.html). Results are separated by: - Molecular Function - Biological Process - Cellular Component And, in each ontology, under, over and all differentially expressed GO terms are given. All the files are in table separated values format, with the last common providing the accession numbers of proteins annotated with the GO term under consideration.
DOI: 10.15454/ohxqsb
title: RPG complété 2019 département 17

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 17. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021
DOI: 10.15454/kypen0
title: Negative set used to identify enriched motif in effectors regulatory regions

description: As negative set, we selected 167 M. incognita genes from an Orthofinder analysis (Emms Kelly, 2019) previously performed on 64 genomes, including 62 nematodes and two outgroup tardigrade species (Grynberg et al., 2020). The selection criteria were as follows: (i) the vast majority (163 genes) came from orthogroups conserved in at least 80% of the species and 85% of the Tylenchida and did not form multigene families. Being widely conserved across nematodes, including in many non phytoparasitic species and not forming multigene families, these genes are more likely involved in core housekeeping functions than coding for effector proteins. (ii) four genes specific to root-knot nematodes but bearing no signal peptide for secretion, including one gene specific to M. incognita.
DOI: 10.15454/log7p4
title: MetaColi dataset

description: The Metacoli project aimed at understanding the metabolic response of a variety of E. Coli bacterial strains to different culture media. Here we provide the raw datasets of quantitative proteomics analysis and enzyme assays performed on five E. Coli strains grown on four different cuture media. We provide a set of R scripts for data analysis along with a detailed material ans method about the experiment and data analyses. We also provide a R script that analyses the relationships between enzyme abudance and enzyme activity. Those data clearly evidence a trade-off between abundance and activity.
DOI: 10.15454/mhjpyt
title: Database to collect emission values for livestock systems : ELFE database

description: Increasing demand for animal products has contributed to the increase in biogeochemical fluxes, leading particularly to gaseous ammonia, methane and nitrous oxide emissions into the atmosphere. Air pollution from livestock production systems has thus become a major environmental issue at local (ecosystem eutrophication and acidification), regional (air quality) and global (climate change) scales. Developing accurate knowledge on the sources and magnitude of gas emissions from the livestock sector is essential to reduce emissions, while meeting other societal expectations, and to implement effective regulations. To this end, the ELFE database was recently developed. It currently contains ca. 5 200 gas emission measurements extracted from 345 publications of the international literature published from 1964 to 2018 by first authors from 37 countries. One of its innovative aspects is the structured and comprehensive description of both the livestock system and the measurement method associated with emission data. Among the gases emitted by livestock systems, ammonia represented 40-80% of emission values and slurry 45-81% of production systems, depending on the animal produced. This database will contribute to improved emission factors for national inventories by more thoroughly considering factors influencing emission levels and data quality. It highlights the need for shared and standardized reporting protocols of both the livestock system itself and the measurement conditions, to allow for thorough comparisons and to reduce uncertainty in unit conversions.
DOI: 10.15454/nbir7p
title: Soil physicochemical properties - Field study

description: Detailed soil physical and chemical properties in three replicates per land-use (two depths) along a land-use gradient at Wytham, Oxfordshire, southern England (1◦ 20 ′ W, 51◦ 47 ′ N)
DOI: 10.15454/nhhrsr
title: RPG complété 2019 département 63

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 63. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.