cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14189991.v1
title: Additional file 3 of Genome-wide analysis of spatiotemporal expression patterns during rice leaf development

description: Additional file 3:. Three-dimensional model of Supplemental Figure 4. A three-dimensional model of PCA score plot of samples based on the original principal components. The proportions of the total variance explained by PC1, PC2, and PC3 are shown in parentheses. Samples collected at the same stage are shown in the same color. Samples with different tissue identities are indicated by different symbols: shoot apex, square; P3 leaf, circle; blade, triangle; blade-sheath boundary, diamond; sheath, inverted triangle. Red arrows represent the directions of the modified principal components (mPC1, mPC2, and mPC3) shown in Fig. 2.
DOI: 10.6084/m9.figshare.14190027.v1
title: Additional file 11 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 11. Stomoxys salivary gland RNA-Seq analysis output.
DOI: 10.6084/m9.figshare.14190027
title: Additional file 11 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 11. Stomoxys salivary gland RNA-Seq analysis output.
DOI: 10.6084/m9.figshare.14190024
title: Additional file 10 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 10. Stomoxys male reproductive tract-biased genes.
DOI: 10.6084/m9.figshare.14190030
title: Additional file 12 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 12. Stomoxys metabolic detoxification gene family member amino acid sequences.
DOI: 10.6084/m9.figshare.14190033.v1
title: Additional file 13 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 13. Stomoxys cytochrome P450 gene family identification.
DOI: 10.6084/m9.figshare.14190024.v1
title: Additional file 10 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 10. Stomoxys male reproductive tract-biased genes.
DOI: 10.6084/m9.figshare.14190033
title: Additional file 13 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 13. Stomoxys cytochrome P450 gene family identification.
DOI: 10.6084/m9.figshare.14190036
title: Additional file 14 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 14. Stomoxys cytochrome P450 amino acid sequences.
DOI: 10.6084/m9.figshare.14190042.v1
title: Additional file 15 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 15. Stomoxys transcription factor expression analysis.
DOI: 10.6084/m9.figshare.14190045.v1
title: Additional file 16 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 16. Prokaryote and eukaryote databases used for the lateral gene transfer prediction pipeline.
DOI: 10.6084/m9.figshare.14190036.v1
title: Additional file 14 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 14. Stomoxys cytochrome P450 amino acid sequences.
DOI: 10.6084/m9.figshare.14190045
title: Additional file 16 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 16. Prokaryote and eukaryote databases used for the lateral gene transfer prediction pipeline.
DOI: 10.6084/m9.figshare.14190030.v1
title: Additional file 12 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 12. Stomoxys metabolic detoxification gene family member amino acid sequences.
DOI: 10.6084/m9.figshare.14190054
title: Additional file 2 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 2. Functional annotation of transcripts assembled from the Stomoxys genome and output from g:Profiler analysis.
DOI: 10.6084/m9.figshare.14190057
title: Additional file 3 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 3. Output from analysis of core CEGMA proteins in the Stomoxys genome.
DOI: 10.6084/m9.figshare.14190060
title: Additional file 4 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 4. Output from RNA-Seq Dataset Analyses.
DOI: 10.6084/m9.figshare.14190060.v1
title: Additional file 4 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 4. Output from RNA-Seq Dataset Analyses.
DOI: 10.6084/m9.figshare.14190057.v1
title: Additional file 3 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 3. Output from analysis of core CEGMA proteins in the Stomoxys genome.
DOI: 10.6084/m9.figshare.14190042
title: Additional file 15 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 15. Stomoxys transcription factor expression analysis.
DOI: 10.6084/m9.figshare.14190063
title: Additional file 5 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 5. Output from cluster analysis of 16S bacterial isolate sequencing.
DOI: 10.6084/m9.figshare.14190063.v1
title: Additional file 5 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 5. Output from cluster analysis of 16S bacterial isolate sequencing.
DOI: 10.6084/m9.figshare.14190066
title: Additional file 6 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 6. Stomoxys immune-related proteins identified by similarity to HMM profiles of Drosophila immune protein families and by manual annotation.
DOI: 10.6084/m9.figshare.14190066.v1
title: Additional file 6 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 6. Stomoxys immune-related proteins identified by similarity to HMM profiles of Drosophila immune protein families and by manual annotation.
DOI: 10.6084/m9.figshare.14190069
title: Additional file 7 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 7. Stomoxys antimicrobial peptide amino acid sequences.
DOI: 10.6084/m9.figshare.14190072
title: Additional file 8 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 8. Stomoxys chemosensory gene family member amino acid sequences.
DOI: 10.6084/m9.figshare.14190054.v1
title: Additional file 2 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 2. Functional annotation of transcripts assembled from the Stomoxys genome and output from g:Profiler analysis.
DOI: 10.6084/m9.figshare.14190069.v1
title: Additional file 7 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 7. Stomoxys antimicrobial peptide amino acid sequences.
DOI: 10.6084/m9.figshare.14190072.v1
title: Additional file 8 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 8. Stomoxys chemosensory gene family member amino acid sequences.
DOI: 10.6084/m9.figshare.14190075.v1
title: Additional file 9 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 9. Stomoxys chemosensory gene family annotation and normalized RNA-Seq expression data.
DOI: 10.6084/m9.figshare.14190075
title: Additional file 9 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

description: Additional file 9. Stomoxys chemosensory gene family annotation and normalized RNA-Seq expression data.
DOI: 10.6084/m9.figshare.14190087
title: Additional file 1 of A method for interoperable knowledge-based data quality assessment

description: Additional file 1: Appendix A. Example MM.
DOI: 10.6084/m9.figshare.14190087.v1
title: Additional file 1 of A method for interoperable knowledge-based data quality assessment

description: Additional file 1: Appendix A. Example MM.
DOI: 10.6084/m9.figshare.14190090.v1
title: Additional file 2 of A method for interoperable knowledge-based data quality assessment

description: Additional file 2: Appendix B. Example AQL.
DOI: 10.6084/m9.figshare.14190090
title: Additional file 2 of A method for interoperable knowledge-based data quality assessment

description: Additional file 2: Appendix B. Example AQL.
DOI: 10.6084/m9.figshare.14190099
title: Additional file 1 of The value of the portable fibrinogen measuring device—a case report of severe postpartum hemorrhage with obstetric disseminated intravascular coagulation

description: Additional file 1.
DOI: 10.6084/m9.figshare.14190099.v1
title: Additional file 1 of The value of the portable fibrinogen measuring device—a case report of severe postpartum hemorrhage with obstetric disseminated intravascular coagulation

description: Additional file 1.
DOI: 10.6084/m9.figshare.14190132
title: Additional file 2 of A novel model to label delirium in an intensive care unit from clinician actions

description: Additional file 2. Study R Markdown file with data pre-processing and variable selection.
DOI: 10.5281/zenodo.4591412
title: NPTEL2020-Indian-English-Speech-Train-part6

description: English Speech Recognition dataset collected from NPTEL videos. For more information, check:<br> https://github.com/AI4Bharat/NPTEL2020-Indian-English-Speech-Dataset
DOI: 10.6084/m9.figshare.14190132.v1
title: Additional file 2 of A novel model to label delirium in an intensive care unit from clinician actions

description: Additional file 2. Study R Markdown file with data pre-processing and variable selection.
DOI: 10.5281/zenodo.4591411
title: NPTEL2020-Indian-English-Speech-Train-part6

description: English Speech Recognition dataset collected from NPTEL videos. For more information, check:<br> https://github.com/AI4Bharat/NPTEL2020-Indian-English-Speech-Dataset
DOI: 10.6084/m9.figshare.14190179
title: Additional file 5 of Deep active learning for classifying cancer pathology reports

description: Additional file 5. Training and inference time for the histology experiment (large dataset) using ratio sampling.
DOI: 10.6084/m9.figshare.14190179.v1
title: Additional file 5 of Deep active learning for classifying cancer pathology reports

description: Additional file 5. Training and inference time for the histology experiment (large dataset) using ratio sampling.
DOI: 10.6084/m9.figshare.14190182.v1
title: Additional file 6 of Deep active learning for classifying cancer pathology reports

description: Additional file 6. Large dataset: micro/macro F-1 scores table - histology task.
DOI: 10.6084/m9.figshare.14190182
title: Additional file 6 of Deep active learning for classifying cancer pathology reports

description: Additional file 6. Large dataset: micro/macro F-1 scores table - histology task.
DOI: 10.6084/m9.figshare.14190185.v1
title: Additional file 7 of Deep active learning for classifying cancer pathology reports

description: Additional file 7. Large dataset: micro/macro F-1 scores table - subsite task.
DOI: 10.6084/m9.figshare.14190188
title: Additional file 8 of Deep active learning for classifying cancer pathology reports

description: Additional file 8. Small dataset: micro/macro F-1 scores table - histology task.
DOI: 10.6084/m9.figshare.14190188.v1
title: Additional file 8 of Deep active learning for classifying cancer pathology reports

description: Additional file 8. Small dataset: micro/macro F-1 scores table - histology task.
DOI: 10.6084/m9.figshare.14190191
title: Additional file 9 of Deep active learning for classifying cancer pathology reports

description: Additional file 9. Small dataset: micro/macro F-1 scores table - subsite task.
DOI: 10.6084/m9.figshare.14190191.v1
title: Additional file 9 of Deep active learning for classifying cancer pathology reports

description: Additional file 9. Small dataset: micro/macro F-1 scores table - subsite task.
DOI: 10.6084/m9.figshare.14190185
title: Additional file 7 of Deep active learning for classifying cancer pathology reports

description: Additional file 7. Large dataset: micro/macro F-1 scores table - subsite task.
DOI: 10.6084/m9.figshare.14190246
title: Additional file 1 of A novel variant in the COL6A1 gene causing Ullrich congenital muscular dystrophy in a consanguineous family: a case report

description: Additional file 1: Table S1. List of variants found after the filtering steps.
DOI: 10.6084/m9.figshare.14190246.v1
title: Additional file 1 of A novel variant in the COL6A1 gene causing Ullrich congenital muscular dystrophy in a consanguineous family: a case report

description: Additional file 1: Table S1. List of variants found after the filtering steps.
DOI: 10.6084/m9.figshare.14190254
title: Additional file 11 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 11. The extracted data from GO analysis for 98 DEGs used as a query.
DOI: 10.6084/m9.figshare.14190254.v1
title: Additional file 11 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 11. The extracted data from GO analysis for 98 DEGs used as a query.
DOI: 10.6084/m9.figshare.14190257
title: Additional file 12 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 12 Upstream sequences (2 kb) extracted from all 98 DEGs used for cis-regulatory motif prediction analysis.
DOI: 10.6084/m9.figshare.14190257.v1
title: Additional file 12 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 12 Upstream sequences (2 kb) extracted from all 98 DEGs used for cis-regulatory motif prediction analysis.
DOI: 10.6084/m9.figshare.14190266
title: Additional file 15 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 15. Degradome profile (TargetSeek approach) demonstrates potential mRNA targets for differentially expressed miRNAs (DEMs) identified in barley shoots (low-Pi vs. control). The lower the alignment score, the more reliable the prediction.
DOI: 10.6084/m9.figshare.14190269.v1
title: Additional file 16 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 16. Degradome profile (TargetSeek approach) demonstrates potential mRNA targets for differentially expressed other sRNAs (DESs) identified in barley shoots (low-Pi vs. control). The lower the alignment score, the more reliable the prediction.
DOI: 10.6084/m9.figshare.14190275
title: Additional file 18 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 18. Degradome profile (TargetSeek approach) demonstrates potential mRNA targets for differentially expressed other sRNAs (DESs) identified in barley roots (low-Pi vs. control). The lower the alignment score, the more reliable the prediction.
DOI: 10.6084/m9.figshare.14190266.v1
title: Additional file 15 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 15. Degradome profile (TargetSeek approach) demonstrates potential mRNA targets for differentially expressed miRNAs (DEMs) identified in barley shoots (low-Pi vs. control). The lower the alignment score, the more reliable the prediction.
DOI: 10.6084/m9.figshare.14190272
title: Additional file 17 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 17. Degradome profile (TargetSeek approach) demonstrates potential mRNA targets for differentially expressed miRNAs (DEMs) identified in barley roots (low-Pi vs. control). The lower the alignment score, the more reliable the prediction.
DOI: 10.6084/m9.figshare.14190272.v1
title: Additional file 17 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 17. Degradome profile (TargetSeek approach) demonstrates potential mRNA targets for differentially expressed miRNAs (DEMs) identified in barley roots (low-Pi vs. control). The lower the alignment score, the more reliable the prediction.
DOI: 10.6084/m9.figshare.14190275.v1
title: Additional file 18 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 18. Degradome profile (TargetSeek approach) demonstrates potential mRNA targets for differentially expressed other sRNAs (DESs) identified in barley roots (low-Pi vs. control). The lower the alignment score, the more reliable the prediction.
DOI: 10.6084/m9.figshare.14190278
title: Additional file 19 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 19. Degradome profile (PAREsnip2 approach) demonstrates potential mRNA targets for differentially expressed miRNAs (DEMs) identified in barley shoots (low-Pi vs. control). The lower the alignment score, the more reliable the prediction.
DOI: 10.6084/m9.figshare.14190269
title: Additional file 16 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 16. Degradome profile (TargetSeek approach) demonstrates potential mRNA targets for differentially expressed other sRNAs (DESs) identified in barley shoots (low-Pi vs. control). The lower the alignment score, the more reliable the prediction.
DOI: 10.6084/m9.figshare.14190287
title: Additional file 21 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 21. Degradome profile (PAREsnip2 approach) demonstrates potential mRNA targets for differentially expressed other sRNAs (DESs) identified in barley shoots (low-Pi vs. control). The lower the alignment score, the more reliable the prediction.
DOI: 10.6084/m9.figshare.14190287.v1
title: Additional file 21 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 21. Degradome profile (PAREsnip2 approach) demonstrates potential mRNA targets for differentially expressed other sRNAs (DESs) identified in barley shoots (low-Pi vs. control). The lower the alignment score, the more reliable the prediction.
DOI: 10.6084/m9.figshare.14190278.v1
title: Additional file 19 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 19. Degradome profile (PAREsnip2 approach) demonstrates potential mRNA targets for differentially expressed miRNAs (DEMs) identified in barley shoots (low-Pi vs. control). The lower the alignment score, the more reliable the prediction.
DOI: 10.6084/m9.figshare.14190293
title: Additional file 23 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 23. Degradome profile (PAREsnip2 approach) demonstrates potential mRNA targets for differentially expressed miRNAs (DEMs) identified in barley roots (low-Pi vs. control). The lower the alignment score, the more reliable the prediction.
DOI: 10.6084/m9.figshare.14190293.v1
title: Additional file 23 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 23. Degradome profile (PAREsnip2 approach) demonstrates potential mRNA targets for differentially expressed miRNAs (DEMs) identified in barley roots (low-Pi vs. control). The lower the alignment score, the more reliable the prediction.
DOI: 10.6084/m9.figshare.14190299
title: Additional file 25 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 25. Degradome profile (PAREsnip2 approach) demonstrates potential mRNA targets for differentially expressed other sRNAs (DESs) identified in barley roots (low-Pi vs. control). The lower the alignment score, the more reliable the prediction.
DOI: 10.6084/m9.figshare.14190299.v1
title: Additional file 25 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 25. Degradome profile (PAREsnip2 approach) demonstrates potential mRNA targets for differentially expressed other sRNAs (DESs) identified in barley roots (low-Pi vs. control). The lower the alignment score, the more reliable the prediction.
DOI: 10.6084/m9.figshare.14190305
title: Additional file 27 of Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

description: Additional file 27. List of genes predicted in degradome analysis to be guided for cleavage by putative regulatory sRNAs (identified as DES) with best scoring matches.