cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26485543.v1
title: Legacy effect of organic manure

description: Soil microbiome, influenced by plant activity, can affect the growth of subsequent plant species, a phenomenon known as plant-soil feedback. This feedback depends on the microbial legacies left by previous plants and fertilization practices. However, the impact of soil microbiome legacies induced by organic manure application on crop performance and greenhouse gas emission remains largely unknown. In this study, we investigated bacterial, fungal, and protistan communities, as well as functional groups and gene abundances, under organic manure and chemical fertilizer applications in a 14-year field experiment. A pot experiment was conducted to explore the effects of microbial communities induced by these treatments on subsequent crop performance and greenhouse gas emissions. We found that organic manure application increased microbial alpha diversity while reducing plant pathogen abundance compared to chemical fertilizers. Improved crop performance under organic manure application was mainly attributed to increased microbial alpha diversity, rather than a reduction in plant pathogens. Organic manure enhanced the abundance of carbon degradation genes, leading to increased CO<sub>2</sub> emissions, but it reduced N<sub>2</sub>O emissions via a reduction of nitrification and denitrification gene abundances compared to chemical fertilizers. Our findings emphasize the legacy effects of soil microbiome under organic manure application are beneficial for improving crop performance and mitigating greenhouse gas emissions.
DOI: 10.5281/zenodo.13950779
title: Free Energy of Membrane Pore Formation and Stability from Molecular Dynamics Simulations
DOI: 10.6084/m9.figshare.c.3613931_d1.v1
title: Additional file 1: Table S1. of WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis

description: Genes which are up-regulated more than 2-fold in wrky6 + P. indica in LP (log2 value ≥ 1 or ≤ −1). (XLS 200 kb)
DOI: 10.6084/m9.figshare.c.3613934_d2.v1
title: Additional file 7: Table S3. of Application of single-cell RNA sequencing in optimizing a combinatorial therapeutic strategy in metastatic renal cell carcinoma

description: Sequencing statistics for bulk cells and single-cell RNA-seq. Mapping information (to the hg19 genome reference) was obtained from log files after running STAR. RNA-SeQC was applied to generate a series of quality control metrics. (XLSX 21.4 kb)
DOI: 10.6084/m9.figshare.c.3613937_d2.v1
title: Additional file 2 of Generalized method of moments for estimating parameters of stochastic reaction networks

description: Matlab code and data. This file contains the Matlab codes and samples which were used to produce the results. (GZ 9349 kb)
DOI: 10.17863/cam.6785
title: Data supporting ''Processing and Properties of Bar-shaped Single-seeded and Multi-seeded YBCO Bulk Superconductors by a Top Seeded Melt Growth Technique''

description: Data supporting the publication. The enclosed data set contains raw data connected with magnetization measurements, trapped field properties and levitation data.
DOI: 10.6084/m9.figshare.c.3613934_d6.v1
title: Additional file 3: Table S1. of Application of single-cell RNA sequencing in optimizing a combinatorial therapeutic strategy in metastatic renal cell carcinoma

description: Somatic mutations identified in tumor samples from whole-exome sequencing. Single-nucleotide variants (SNVs) were annotated by implementing SnpEff. Whole-exome sequencing data of paired patient blood was used to identify somatic variants in parental tumors and matched xenografts of pRCCs and mRCCs, which are shown in separate sheets. (XLSX 218 kb)
DOI: 10.17863/cam.108401
title: Research data supporting "Using ChatGPT for Thematic Analysis Working Paper: UN policy documents 2017-2024."

description: Data contain 63 UN policy documents and press releases from the Digital Library covering the years 2017 to March 2024 and over 700 distinct codes for Thematic Analysis generated by the custom GPT model developed for the AI & Geopolitics Project (AIxGEO). More information can be found in the ReadMe file.
DOI: 10.23668/psycharchives.2880
title: Replication and Revised Model Testing: The Effect of Shopping Satisfaction during Leisure Travel on Satisfaction with Life Overall: The Mitigating Role of Financial Concerns [Dataset]

description: Dataset for: Sirgy, M. J., Yu, G. B., Lee, D.-J., & Bosnjak, M. (2019, October 30). Replication and Revised Model Testing: The Effect of Shopping Satisfaction during Leisure Travel on Satisfaction with Life Overall: The Mitigating Role of Financial Concerns. Leibniz Institut für Psychologische Information und Dokumentation (ZPID). https://doi.org/10.23668/PSYCHARCHIVES.2636
description: The overall aim of this pre-registered study is to replicate the data collection process of a previously pre-registered research protocol published by Sirgy et al. (2019) using a new sample sharing the same properties as the initial study, and a revised survey questionnaire. As the previous one, the present study is designed to demonstrate that financial concerns play an important role in the way leisure travel contributes to tourist’s life satisfaction. Specifically, financial concerns are likely to dampen the effects of satisfaction with shopping, satisfaction with leisure travel, satisfaction with leisure life, and satisfaction with life overall. First, the initial model of Sirgy et al. (2019) will be tested with the new data set. Second, a revised model will be tested, which posits that hedonic and eudaimonic experiences during travel-leisure travel satisfaction relationships are negatively moderated by overspending during shopping. Third, moderated regression analysis with mean-centered variables will be conducted to test the interactive effect and the results are expected to show that there are significantly negative interaction effects.
DOI: 10.6084/m9.figshare.c.3613973_d1.v1
title: Additional file 4 of Incorporation of subject-level covariates in quantile normalization of miRNA data

description: Summarizes the reproduction of significance results from previous CRC miRNA literature [ 31 , 32 ] as discussed in the â   Application to motivating example (real CRC data) â   section, using the weighted quantile normalization method. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3613973_d2.v1
title: Additional file 1 of Incorporation of subject-level covariates in quantile normalization of miRNA data

description: Provides an implementation of the weighted quantile normalization algorithm (as describe in the â   Weighted quantile normalization â   section) written for the R language [ 25 ], with a demonstration using simulated data. (R 2 kb)
DOI: 10.6084/m9.figshare.c.3613976_d2.v1
title: Additional file 2: of Ty1-copia elements reveal diverse insertion sites linked to polymorphisms among flax (Linum usitatissimum L.) accessions

description: Insertion age and domains of representative sequences from selected Ty1-copia families. Characterization of six Ty1-copia elements which represent the six families investigated in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3613976_d4.v1
title: Additional file 7: of Ty1-copia elements reveal diverse insertion sites linked to polymorphisms among flax (Linum usitatissimum L.) accessions

description: GO functional categories of flax closest orthologs in Arabidopsis. The flax gene sequences from Additional file 4 where used to search the Arabidopsis closest ortholog, and these were used for functional classification using Gene Ontology (see Methods). (XLSX 9 kb)
DOI: 10.17863/cam.48785
title: Research data supporting "A simple MRI scores aids prediction of dementia in cerebral small vessel disease"

description: Data from the three studies used in analysis in this paper. The three studies are SCANS, RUN DMC and ASPS. The dataset is the pooled dataset used to look at prediction of dementia using the simple MRI score and the amended MRI score. Fields are: Age-years Gender Dementia during follow-up - 1=dementia Years of education EF= Executive function PS= Processing speed Global=global cognitive score Diabetes mellitus - 1=yes smoking Hypertension 1=yes hypercholesterolaemia-1=yes Number of lacunes- zero or more than zero Fazekas white matter hyperintensity category Study data originated from -SCANS-RUN DMC ASPS Study1- differentiates which ASPS dataset data came from SVD simple score SVD amended score Fazekas score Lacune count CMB count
DOI: 10.6084/m9.figshare.c.3613976_d6.v1
title: Additional file 1: of Ty1-copia elements reveal diverse insertion sites linked to polymorphisms among flax (Linum usitatissimum L.) accessions

description: (A-E). Primers. Sets of primers for all experiments performed. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3613991_d1.v1
title: MOESM1 of Molecular forensics in avian conservation: a DNA-based approach for identifying mammalian predators of ground-nesting birds and eggs

description: Additional file 1. Predator genotypes in genepop format with each PCR replicate included for microsatellites set A in genepop format (.prn).
DOI: 10.6084/m9.figshare.c.3613991_d2.v1
title: MOESM2 of Molecular forensics in avian conservation: a DNA-based approach for identifying mammalian predators of ground-nesting birds and eggs

description: Additional file 2. Predator genotypes in genepop format with each PCR replicate included for microsatellites set B in genepop format (.prn).
DOI: 10.23668/psycharchives.2884
title: Data for "A matter of flexibility: Changing outgroup attitudes through messages with negations"

description: Datasets for: Winter, K., Scholl, A., & Sassenberg, K. (2020). A matter of flexibility: Changing outgroup attitudes through messages with negations. Journal of Personality and Social Psychology. Advance online publication. https://doi.org/10.1037/pspi0000305
description: Attitudes toward outgroups are an important determinant of peaceful coexistence in diverse societies, but it is difficult to improve them. The current research studies the impact of messages with negations on outgroup attitudes, more specifically on outgroup trust. All studies were preregistered. Using different target groups, Studies 1 and 2 provide evidence for the prediction that communicating negations (e.g., “they are not deceptive”) enhances outgroup trust (more so than affirmations, such as “they are reliable,” and no messages) among people who are initially low in outgroup trust. Three additional studies (Studies 3a, 3b, and 4), using both a causal chain approach and (moderated) mediation analysis, demonstrate that negations promote cognitive flexibility which in turn enhances outgroup trust among those initially low in outgroup trust. One final study suggests that these findings generalize to outgroup attitude change per se by showing that communicating negations also results in more moderate attitudes when the dominant initial attitude is positive (Study 5: high warmth) rather than negative (Studies 1–4: low trustworthiness). As such, communication that negates people’s initial outgroup attitudes could be an effective (previously discounted) intervention to reduce prejudice in intergroup settings. (PsycInfo Database Record (c) 2020 APA, all rights reserved)
DOI: 10.6084/m9.figshare.c.3614021_d1.v1
title: Additional file 1: of Cancer patients participating in a lifestyle intervention during chemotherapy greatly over-report their physical activity level: a validation study

description: Availability of data and materials. (XLSX 47 kb)
DOI: 10.15468/dl.9qkrfe
title: Occurrence Download

description: A dataset containing 546 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Strix nivicolum (Blyth, 1845)"
 ]
}

 The dataset includes 546 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037690-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.69709
title: Research data supporting Virtual reality design-build-test games with physics simulation: opportunities for researching design cognition

description: The research methods are described in the publication. The data were collected in February 2018 during two exploratory workshops conducted at the Department of Engineering of the University of Cambridge (UK). This spreadsheet file contains the descriptive and numerical data resulting from the participants’ performance in the conception generation phase, first build & test phase and second build & test phase of the two workshops. In the spreadsheet, the column headings correspond to the methods described in the publication.
DOI: 10.23668/psycharchives.2886
title: Dataset for: Acute stress improves concentration performance – opposite effects of anxiety and cortisol

description: Acute stress can have both detrimental and beneficial effects on cognitive processing, but effects on concentration performance remain unclear. Here, we investigate the effects of acute psychosocial stress on concentration performance and possible underlying physiological and psychological mechanisms. The study sample comprised 47 healthy male participants who were randomly assigned either to a psychosocial stress situation (Trier Social Stress Test) or a neutral control task. Concentration performance was assessed using the d2 Test of Attention before and 30 min after the stress or control task. Salivary cortisol and alpha-amylase were repeatedly measured before and up to 1 hr after stress. We repeatedly assessed state anxiety using the State-Trait Anxiety Inventory and anticipatory cognitive stress appraisal using the Primary Appraisal Secondary Appraisal questionnaire. The stress group showed a significantly stronger improvement of concentration performance compared to the control group (p = .042). Concentration performance improvement was predicted by increased state anxiety (p = .020) and lower cortisol (stress) changes (p = .043). Neither changes in alpha-amylase nor cognitive stress appraisal did relate to concentration performance. Our results show improved concentration performance after acute psychosocial stress induction that was predicted by higher state anxiety increases and lower cortisol increases. This points to a potential modulating role of specific psycho-emotional and physiological factors with opposite effects.
description: Dataset for: Degroote, C., Schwaninger, A., Heimgartner, N., Hedinger, P., Ehlert, U., & Wirtz, P. H. (2020). Acute Stress Improves Concentration Performance. Experimental Psychology, 67(2), 88–98. https://doi.org/10.1027/1618-3169/a000481
DOI: 10.17863/cam.80318
title: Research data supporting "How useful is religious language in children’s expressions of spirituality?"

description: Four files comprising survey details and three files of data generated during empirical research at Wesley House, Cambridge. Primary-aged children from three settings (a Sunday school, an after-school club adjacent to a secular primary school, and a church school) chose prayers of various styles in response to a story. Their choices were correlated against setting, age etc, and the findings are noted in the papers which this dataset supports. The documents in this data set are: 1) open format multi-page spreadsheet comprising the raw data (fully anonymised) as collected, arranged by prayer style, arranged by setting, and arranged by age, plus leaders' responses. Includes means, notes of anomalies, charts and comparisons. 2) open format text document containing the respondents' composed prayers and comments. Foriegn-language and illegible responses have glosses where possible, and there are descriptions of drawn items. Each response includes the child's line from the spreadsheet showing the styles they chose in the main survey. 3) open format text document containing the story, images and prayers used in the main survey. Includes a table for decoding the letters (ABCD) into styles (Formal, Poetic, Natural, Simple). 4) open format text document containing age-appropriate consent form and additional data collected for correlation. $$ \ $$ Author (Fay Rowland) ORCID: 0000-0003-0051-1639
DOI: 10.15468/dl.347zvk
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Paraguay",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Prosopis alba Griseb."
 ]
}

 The dataset includes 43 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037691-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23668/psycharchives.2887
title: Dataset for: The official soundtrack to “Five shades of grey”: Generalization in multimodal distractor-based retrieval

description: Dataset for the study "The official soundtrack to “Five shades of grey”: Generalization in multimodal distractor-based retrieval", to-be-published in Attention, Perception, & Psychophysics. For further information please refer to the aforementioned paper. The aggregated data files can be analyzed by using the respective SPSS-Syntax available under "Code for: The official soundtrack to “Five shades of grey”: Generalization in multimodal distractor-based retrieval" to perform the analysis reported in the paper. See "ReadMe.pdf" for further information.
description: When responding to two events in a sequence, the repetition or change of stimuli and the accompanying response can benefit or interfere with response execution: Full repetition leads to benefits in performance while partial repetition leads to costs. Additionally, even distractor stimuli can be integrated with a response, and can, upon repetition, lead to benefits or interference. Recently it has been suggested that not only identical, but also perceptually similar distractors retrieve a previous response (Singh et al., Attention, Perception, & Psychophysics, 78(8), 2307-2312, 2016): Participants discriminated four visual shapes appearing in five different shades of grey, the latter being irrelevant for task execution. Exact distractor repetitions yielded the strongest distractor-based retrieval effect, which decreased with increasing dissimilarity between shades of grey. In the current study, we expand these findings by conceptually replicating Singh et al. (2016) using multimodal stimuli. In Experiment 1 (N=31), participants discriminated four visual targets accompanied by five auditory distractors. In Experiment 2 (N=32), participants discriminated four auditory targets accompanied by five visual distractors. We replicated the generalization of distractor-based retrieval – that is, the distractor-based retrieval effect decreased with increasing distractor-dissimilarity. These results not only show that generalization in distractor-based retrieval occurs in multimodal feature processing, but also that these processes can occur for distractors perceived in a different modality to that of the target.
description: Dataset for: Schöpper, L., Singh, T. & Frings, C. The official soundtrack to “Five shades of grey”: Generalization in multimodal distractor-based retrieval. Atten Percept Psychophys 82, 3479–3489 (2020). https://doi.org/10.3758/s13414-020-02057-4
DOI: 10.6084/m9.figshare.c.3614078_d2.v1
title: Additional file 3: of Investigation of SLA4A3 as a candidate gene for human retinal disease

description: All sequence variants identified. Description of all sequence variants identified, including genomic location, nucleotide and amino acid change, predicted effect of splice sites, and SNP identifier. (XLSX 20 kb)
DOI: 10.17863/cam.92510
title: Report presented to Jisc for article processing charges for British Heart Foundation funded papers managed by the University of Cambridge, 1 October 2021-30 September 2022.

description: This Excel spreadsheet records the open access article processing charges (APCs) charged to the British Heart Foundation block grant held by Cambridge University Library, via the Office of Scholarly Communication, between 1 October 2021-30 September 2022.
DOI: 10.17863/cam.84871
title: Data for "Bacteria–photocatalyst sheet for sustainable carbon dioxide utilization”
title: Bacteria-photocatalyst sheet for sustainable carbon capture and utilisation

description: This dataset contains the raw data supporting the results of the study titled “Bacteria-photocatalyst sheet for sustainable carbon dioxide utilization”. The data was collected using the instrumentation described in the Methods section of the study.
DOI: 10.6084/m9.figshare.c.3614093_d4.v1
title: Additional file 6: of A transcriptome-based model of central memory CD4 T cell death in HIV infection

description: RT-PCR validation of TCM cell signature in HIV infection. Table that lists the results of RT-PCR validation of 91 genes of TCM cell signature in HIV infection. (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3614108_d4.v1
title: Additional file 8: of Widespread parainflammation in human cancer

description: Spearman coefficients of correlations between gene expression profiles and the PI scores across the carcinoma cell lines. Many genes not in part of the PI signature are highly correlated with the PI score, suggesting their role in PI. (XLSX 422 kb)
DOI: 10.6084/m9.figshare.c.3614135_d1.v1
title: Additional file 1: of Evidence of surgical outcomes fluctuates over time: results from a cumulative meta-analysis of laparoscopic versus open appendectomy for acute appendicitis

description: Pooled odds ratio in intra-abdominal abscess for trials comparing laparoscopic appendcetomy and open appendectomy among studies with low risk of bias. Cummulative odds ratio in intra-abdominal abscess comparing laparoscopic appendectomy and open appendectomy among studies with low risk of bias. Pooled odds ratio in intra-abdominal abscess for trials comparing laparoscopic appendcetomy and open appendectomy among studies with high risk of bias. Cummulative odds ratio in intra-abdominal abscess comparing laparoscopic appendectomy and open appendectomy among studies with high risk of bias. (ZIP 1902 kb)
DOI: 10.6084/m9.figshare.c.3614108_d5.v1
title: Additional file 6: of Widespread parainflammation in human cancer

description: Results from a differential expression analysis of organoid cultures from adenomatous polyps of APCmin/+ mice (Adenoma) versus adenomatous polyps of APCmin/+ mice treated with sulindac. See â  Methodsâ   for organoid culture and sulindac treatment. Each set has three biological replicates. Raw reads and counts are available at the GEO under accession GSE81836. The analysis was performed using the RSEM software package. (XLSX 731 kb)
DOI: 10.6084/m9.figshare.c.3614093_d5.v1
title: Additional file 3: of A transcriptome-based model of central memory CD4 T cell death in HIV infection

description: RMA-normalized gene expression of differentiation-related genes. Table that lists differentiation-related genes and their normalized expression values in each CD4 T cell subpopulation sample. (XLS 631 kb)
DOI: 10.6084/m9.figshare.c.3614108_d6.v1
title: Additional file 1: of Widespread parainflammation in human cancer

description: List of 840 inflammatory response genes based on three manually curated databases: inflammatory response gene lists curated by Ingenuity, InnateDB innate immunity genes, and the Immunogenetic Related Information Source (IRIS). (XLSX 74 kb)
DOI: 10.6084/m9.figshare.c.3614108_d7.v1
title: Additional file 2: of Widespread parainflammation in human cancer

description: Results from differential expression analyses of CKIÎą-deficient and CKIÎą-p53-deficient gut epithelium versus wild-type gut epithelium. Raw RNA-seq counts were obtained from Pribluda et al. [6]. Each set has two replicates. The analysis was performed using the DESeq2 package for R. (XLSX 4406 kb)
DOI: 10.6084/m9.figshare.c.3614108_d8.v1
title: Additional file 4: of Widespread parainflammation in human cancer

description: Results from an Ingenuity upstream regulator analysis performed on the 40 PI genes. (XLSX 123 kb)