cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12876096
title: Additional file 1 of Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

description: Additional file 1: Summary of Blastx (E-value &lt; 10-3) and Blastn (E-value &lt; 10-5) similarity searches on several protein and nucleotide databases for R.philippinarum transcripts annotation. (XLS 35 KB)
DOI: 10.6084/m9.figshare.12876096.v1
title: Additional file 1 of Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

description: Additional file 1: Summary of Blastx (E-value &lt; 10-3) and Blastn (E-value &lt; 10-5) similarity searches on several protein and nucleotide databases for R.philippinarum transcripts annotation. (XLS 35 KB)
DOI: 10.6084/m9.figshare.12876102.v1
title: Additional file 3 of Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

description: Additional file 3: Lists of annotated differentially expressed genes in digestive gland compared to gills. Score, Fold change, q-value and annotation on several protein and nucleotide database were also reported. (XLS 1 MB)
DOI: 10.6084/m9.figshare.12876105
title: Additional file 4 of Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

description: Additional file 4: List of significant probes identified by SAM analysis by comparison of digestive gland and gills of Manila clam sampled in Alberoni and Marghera. Significant probes in common between both tissue were also reported. Down-regulated genes in Marghera samples are highlighted in green while over expressed genes are highlighted in red. For each transcript, fold change, q-value, annotation and homologs zebrafish Ensembl Gene IDs (ENDARP and ENDARG) are reported. (XLS 460 KB)
DOI: 10.6084/m9.figshare.12876102
title: Additional file 3 of Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

description: Additional file 3: Lists of annotated differentially expressed genes in digestive gland compared to gills. Score, Fold change, q-value and annotation on several protein and nucleotide database were also reported. (XLS 1 MB)
DOI: 10.6084/m9.figshare.12876105.v1
title: Additional file 4 of Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

description: Additional file 4: List of significant probes identified by SAM analysis by comparison of digestive gland and gills of Manila clam sampled in Alberoni and Marghera. Significant probes in common between both tissue were also reported. Down-regulated genes in Marghera samples are highlighted in green while over expressed genes are highlighted in red. For each transcript, fold change, q-value, annotation and homologs zebrafish Ensembl Gene IDs (ENDARP and ENDARG) are reported. (XLS 460 KB)
DOI: 10.6084/m9.figshare.12876123.v1
title: Additional file of Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

description: Additional file of Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring
DOI: 10.6084/m9.figshare.12876123.v3
title: Additional file of Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

description: Additional file of Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring
DOI: 10.6084/m9.figshare.12876123.v4
title: Additional file of Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

description: Additional file of Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring
DOI: 10.6084/m9.figshare.7973543
title: Figure data.xlsx

description: data used to generate figures in manuscript
DOI: 10.6084/m9.figshare.7973525
title: CCDB_3739.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973537
title: CCDB_3740.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973525.v1
title: CCDB_3739.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973498
title: CCDB_3737.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red).
DOI: 10.6084/m9.figshare.7973513
title: CCDB_3738.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973537.v1
title: CCDB_3740.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973483
title: CCDB_3734.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973513.v1
title: CCDB_3738.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973498.v1
title: CCDB_3737.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red).
DOI: 10.6084/m9.figshare.7973456
title: CCDB_3733.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973417
title: CCDB_3732.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973456.v1
title: CCDB_3733.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973483.v1
title: CCDB_3734.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973399
title: CCDB_3729.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973399.v1
title: CCDB_3729.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973381
title: CCDB_3728.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973417.v1
title: CCDB_3732.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973363
title: CCDB_3727.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973381.v1
title: CCDB_3728.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973354
title: CCDB_3725.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973363.v1
title: CCDB_3727.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973354.v1
title: CCDB_3725.jpg

description: Projection through merged optical section series of a filled astrocyte (green) in the molecular layer of the dentate gyrus, stained for Epha4 (red), showing the relationship between astrocyte processes and laminar boundaries revealed by EphA4 staining.
DOI: 10.6084/m9.figshare.7973339
title: MATLAB Data Structure

description: This MATLAB data structure contains, for each rat and session: (1) time-stamps for behavioral state epochs (RUN, REM, non-REM)(2) spike-times for each unit<br>(3) rat's positional data<br>See README file for greater detail. <br><br>
DOI: 10.6084/m9.figshare.7973486.v3
title: BARWIENIE BETONU - PRAKTYCZNE WSKAZÓWKI cz 2.pdf

description: Produkcja barwionych elementów wibroprasowanych w niewielkim stopniu różni się od wykonawstwa zwykłych, szarych elementów betonowych. Przy stosowaniu pigmentu w postaci płynu należy uwzględnić dodatkową ilość wody wprowadzaną do mieszanki betonowej (40 ÷ 60 % objętości pigmentu płynnego). Płynna postać pigmentu umożliwia bezpyłowe i wygodniejsze dozowanie. Zdarza się jednak, że wytrąca się w nich osad, gdy zawiesina pozostaje dłuższy czas bez ruchu. Pigment w postaci płynnej wprowadza się po dodaniu wody. Ma to szczególne znaczenie w przypadku chłonnego kruszywa – kruszywo takie powinno być najpierw wymieszane z wodą, a pigment dodany jako ostatni składnik.
DOI: 10.6084/m9.figshare.7971341
title: S1 Table. IC50 values of compounds tested in a HTS screen for inhibition of hookworm egg hatching.

description: IC50 values of 59 hit compounds in a HTS screen for inhibition of hookworm eggs hatching. Compounds were tested in 2 different runs. 100% effect is 10 uM albendazole.
DOI: 10.6084/m9.figshare.7971329
title: Code_raw-data

description: Raw data from the paper "A microfluidic approach for sequential assembly of siRNA polyplexes with defined structure – activity relationship". including R scripts to do statistical analysis and reproduce figures.<br>
DOI: 10.6084/m9.figshare.7971341.v1
title: S1 Table. IC50 values of compounds tested in a HTS screen for inhibition of hookworm egg hatching.

description: IC50 values of 59 hit compounds in a HTS screen for inhibition of hookworm eggs hatching. Compounds were tested in 2 different runs. 100% effect is 10 uM albendazole.
DOI: 10.6084/m9.figshare.7971329.v1
title: Code_raw-data

description: Raw data from the paper "A microfluidic approach for sequential assembly of siRNA polyplexes with defined structure – activity relationship". including R scripts to do statistical analysis and reproduce figures.<br>
DOI: 10.25373/ctsnet.7971305
title: Mastering Bronchoscopy for Thoracic Surgery

description: This article shares 15 years’ worth of experience of bronchoscopy. Originally designed for cardiothoracic surgical trainees, others will find it resourceful. In particular, it's a good reference to have for pulmonologists and trainees, anesthetists, intensivists in the intensive care unit, and medical students interested in the details of the bronchial tree. The author intends these videos to be as comprehensive as the 15 years of experience, and the topic is divided into six chapters.<strong>Chapter 1</strong> covers the development of the bronchopulmonary segments and their nomenclature.<strong>Chapter 2</strong> explains how to perform rigid and flexible bronchoscopy and what is normal.<br><strong>Chapter 3</strong> describes the abnormalities of the central airways.<br><strong>Chapter 4</strong> describes the abnormalities of the right bronchial tree.<br><strong>Chapter 5</strong> describes the abnormalities of the left bronchial tree.<br>Finally, <strong>Chapter 6</strong> shows a one-minute quiz and the answer to how the diagnosis was made. The viewer should resist jumping to the answer before seeing the quiz!<br>One of the main objectives of these videos is to assist the pulmonologists. It is meant to give a gist of how a thoracic surgeon thinks when performing bronchoscopy in terms of diagnosis, tumor biopsy capabilities, assessment for lung resection, and alternative managements, such as laser and stenting. This should help the pulmonologist in referring their patients for surgical intervention. The author hopes it is found to be useful, and please leave your comments so that future videos can be improved.<br><strong>Additional Resources</strong>Segmental anatomy (www.bronchoscopy.nl). hansdaniels YouTube Channel. URL https://www.youtube.com/watch?v=ThYHLG50pH0&t=226s. Published January 23, 2011. Accessed February 13, 2019.Yang K, DiMaio M, Feller-Kopman D. Bronchial Tree: Segmental Anatomy from an Endobronchial View<em>.</em> Kristin Yang YouTube Channel. URL https://www.youtube.com/watch?v=VLsXe5oB2W0. Published June 13, 2011. Accessed February 15, 2019.
DOI: 10.25373/ctsnet.7971305.v1
title: Mastering Bronchoscopy for Thoracic Surgery

description: This article shares 15 years’ worth of experience of bronchoscopy. Originally designed for cardiothoracic surgical trainees, others will find it resourceful. In particular, it's a good reference to have for pulmonologists and trainees, anesthetists, intensivists in the intensive care unit, and medical students interested in the details of the bronchial tree. The author intends these videos to be as comprehensive as the 15 years of experience, and the topic is divided into six chapters.<strong>Chapter 1</strong> covers the development of the bronchopulmonary segments and their nomenclature.<strong>Chapter 2</strong> explains how to perform rigid and flexible bronchoscopy and what is normal.<br><strong>Chapter 3</strong> describes the abnormalities of the central airways.<br><strong>Chapter 4</strong> describes the abnormalities of the right bronchial tree.<br><strong>Chapter 5</strong> describes the abnormalities of the left bronchial tree.<br>Finally, <strong>Chapter 6</strong> shows a one-minute quiz and the answer to how the diagnosis was made. The viewer should resist jumping to the answer before seeing the quiz!<br>One of the main objectives of these videos is to assist the pulmonologists. It is meant to give a gist of how a thoracic surgeon thinks when performing bronchoscopy in terms of diagnosis, tumor biopsy capabilities, assessment for lung resection, and alternative managements, such as laser and stenting. This should help the pulmonologist in referring their patients for surgical intervention. The author hopes it is found to be useful, and please leave your comments so that future videos can be improved.<br><strong>Additional Resources</strong>Segmental anatomy (www.bronchoscopy.nl). hansdaniels YouTube Channel. URL https://www.youtube.com/watch?v=ThYHLG50pH0&t=226s. Published January 23, 2011. Accessed February 13, 2019.Yang K, DiMaio M, Feller-Kopman D. Bronchial Tree: Segmental Anatomy from an Endobronchial View<em>.</em> Kristin Yang YouTube Channel. URL https://www.youtube.com/watch?v=VLsXe5oB2W0. Published June 13, 2011. Accessed February 15, 2019.
DOI: 10.6084/m9.figshare.7971272
title: Energy in Store mini film (3.27mins)

description: This film documents the ‘Energy in Store’ project. A 12 month collaboration between King’s College London and the Science Museum Group. Funded by the AHRC (official project name: ‘Integrating Forms of Care: Building Communities of Practice around Reserve Collections’)
DOI: 10.6084/m9.figshare.7971272.v1
title: Energy in Store mini film (3.27mins)

description: This film documents the ‘Energy in Store’ project. A 12 month collaboration between King’s College London and the Science Museum Group. Funded by the AHRC (official project name: ‘Integrating Forms of Care: Building Communities of Practice around Reserve Collections’)
DOI: 10.6084/m9.figshare.7971242
title: Energy in Store Teaser film

description: This film documents the ‘Energy in Store’ project. A 12 month collaboration between King’s College London and the Science Museum Group. Funded by the AHRC (official project name: ‘Integrating Forms of Care: Building Communities of Practice around Reserve Collections’)
DOI: 10.6084/m9.figshare.7971242.v1
title: Energy in Store Teaser film

description: This film documents the ‘Energy in Store’ project. A 12 month collaboration between King’s College London and the Science Museum Group. Funded by the AHRC (official project name: ‘Integrating Forms of Care: Building Communities of Practice around Reserve Collections’)
DOI: 10.6084/m9.figshare.7971119
title: <i>Phytophthora acaciae</i> sp. nov., a new species causing gummosis of black wattle in Brazil

description: A new <i>Phytophthora</i> species was found associated with gummosis in black wattle plantations in the subtropical, humid, south of Brazil. The new species <i>Phytophthora acaciae</i> is formally named herein based on phylogenetic and morphological analyses. This is the fourth <i>Phytophthora</i> species found from this pathogen complex in black wattle plantations causing gummosis in Brazil. The other three species are <i>P. nicotianae, P. boehmeriae</i>, and <i>P. frigida. Phytophthora acaciae</i> is heterothallic with amphigynous antheridia, noncaducous, papillate sporangia and is placed in the <i>Phytophthora</i> clade 2 based on nuc rDNA internal transcribed spacer (ITS1-5.8S-ITS2 = ITS) sequences. Maximum parsimony and maximum likelihood phylogenetic analyses of <i>P. acaciae</i> isolates based on multigene sequences, including partial DNA sequences of three nuclear protein-coding genes (β-tubulin, translation elongation factor-1α, and ras-related protein), two mitochondrial protein-coding genes (cytochrome <i>c</i> oxidase subunits I and II), in addition to ITS sequence data, support the delimitation of this new species on <i>Acacia mearnsii</i> from the other previously described clade 2 <i>Phytophthora</i> species. Pathogenicity trial confirmed that the new species causes necrotic lesions on the plant stem, with either the presence or absence of gum.
DOI: 10.6084/m9.figshare.7971119.v1
title: <i>Phytophthora acaciae</i> sp. nov., a new species causing gummosis of black wattle in Brazil

description: A new <i>Phytophthora</i> species was found associated with gummosis in black wattle plantations in the subtropical, humid, south of Brazil. The new species <i>Phytophthora acaciae</i> is formally named herein based on phylogenetic and morphological analyses. This is the fourth <i>Phytophthora</i> species found from this pathogen complex in black wattle plantations causing gummosis in Brazil. The other three species are <i>P. nicotianae, P. boehmeriae</i>, and <i>P. frigida. Phytophthora acaciae</i> is heterothallic with amphigynous antheridia, noncaducous, papillate sporangia and is placed in the <i>Phytophthora</i> clade 2 based on nuc rDNA internal transcribed spacer (ITS1-5.8S-ITS2 = ITS) sequences. Maximum parsimony and maximum likelihood phylogenetic analyses of <i>P. acaciae</i> isolates based on multigene sequences, including partial DNA sequences of three nuclear protein-coding genes (β-tubulin, translation elongation factor-1α, and ras-related protein), two mitochondrial protein-coding genes (cytochrome <i>c</i> oxidase subunits I and II), in addition to ITS sequence data, support the delimitation of this new species on <i>Acacia mearnsii</i> from the other previously described clade 2 <i>Phytophthora</i> species. Pathogenicity trial confirmed that the new species causes necrotic lesions on the plant stem, with either the presence or absence of gum.
DOI: 10.6084/m9.figshare.7971122
title: Zebrafish 3D tracking software

description: <b>Zebrafish 3D tracking software works in Matlab 2013.</b><br>The software is unsupported so please collaborate with a software specialist to update to current Matlab version. This will need to be done annually. Please see Deakin et al. 2019 below for set up. <br>Included are all files and the software code both indexed and formatted.<br><b>The software is free to use conditional upon citing the following in any outputs:</b>Deakin, AG, Buckley, J, AlZu'bi, HS, Cossins, AR, Spencer, JW, Al'Nuaimy, W, Young, IS, Thomson, JS & Sneddon, LU. 2019. Automated monitoring of behaviour in zebrafish after invasive procedures.<i> Scientific Reports DOI:10.1038/s41598-019-45464-w</i>AlZu'bi, HS. 2015. Analysis of human activities and animal behaviours based on computation intelligence. Ph.D Thesis, University of Liverpool, Liverpool, UK.<br>
DOI: 10.6084/m9.figshare.12876204.v7
title: Additional file of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

description: Additional file of FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens
DOI: 10.6084/m9.figshare.7971113
title: gVCF_HG01140

description: 1000 Genomes gVCF mapped to hs37d5 for HG01140. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307