cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26186/131588
title: Geoscience Australia ISOTOPE Database

description: The ISOTOPE database stores compiled age and isotopic data from a range of published and unpublished (GA and non-GA) sources. This internal database is only publicly accessible through the webservices given as links on this page.
This data compilation includes sample and bibliographic links. The data structure currently supports summary ages (e.g., U-Pb and Ar/Ar) through the INTERPRETED_AGES tables, as well as extended system-specific tables for Sm-Nd, Pb-Pb, Lu-Hf and O- isotopes. The data structure is designed to be extensible to adapt to evolving requirements for the storage of isotopic data. ISOTOPE and the data holdings were initially developed as part of the Exploring for the Future (EFTF) program.
During development of ISOTOPE, some key considerations in compiling and storing diverse, multi-purpose isotopic datasets were developed:
1) Improved sample characterisation and bibliographic links. Often, the usefulness of an isotopic dataset is limited by the metadata available for the parent sample. Better harvesting of fundamental sample data (and better integration with related national datasets such as Australian Geological Provinces and the Australian Stratigraphic Units Database) simplifies the process of filtering an isotopic data compilation using spatial, geological and bibliographic criteria, as well as facilitating ‘audits’ targeting missing isotopic data.
2) Generalised, extensible structures for isotopic data. The need for system-specific tables for isotopic analyses does not preclude the development of generalised data-structures that reflect universal relationships. GA has modelled relational tables linking system-specific Sessions, Analyses, and interpreted data-Groups, which has proven adequate for all of the Isotopic Atlas layers developed thus far.
3) Dual delivery of ‘derived’ isotopic data. In some systems, it is critical to capture the published data (i.e. isotopic measurements and derived values, as presented by the original author) and generate an additional set of derived values from the same measurements, calculated using a single set of reference parameters (e.g. decay constant, depleted-mantle values, etc.) that permit ‘normalised’ portrayal of the data compilation-wide.
4) Flexibility in data delivery mode. In radiogenic isotope geochronology (e.g. U-Pb, Ar-Ar), careful compilation and attribution of ‘interpreted ages’ can meet the needs of much of the user-base, even without an explicit link to the constituent analyses. In contrast, isotope geochemistry (especially microbeam-based methods such as Lu-Hf via laser ablation) is usually focused on the individual measurements, without which interpreted ‘sample-averages’ have limited value. Data delivery should reflect key differences of this kind.
DOI: 10.26036/cnp0003817
title: Transcriptome of Saliz matsudana under salt stress at 0-12h

description: The root transcriptome of salt-tolerant and salt-sensitive salix roots treated with 200mM NaCl at 0h, 4h, 8h and 12h.
DOI: 10.26036/cnp0003818
title: The root transcriptome of Salix matsudana males and females under salt stress

description: The root transcriptome of Salix matsudana males and females under salt stress.
DOI: 10.26036/cnp0003825
title: Transcriptome Data of Banana Pseudostems

description: Brazil banana and ReKe NO. 3 pseudostem Transcriptome Data at Different Stages
DOI: 10.26186/140068
title: Exploring for the Future Project Areas

description: Exploring for the Future was a $100.5 million initiative by the Australian Government dedicated to boosting investment in resource exploration in Australia. The four-year program (2016-2020) focused on northern Australia and parts of South Australia. The under-explored northern Australian region offers enormous potential for industry development and is advantageously located close to major global markets. Geoscience Australia's leading scientists used and developed new innovative techniques to gather new scientific data and information, on an unprecedented scale, about the potential mineral, energy and groundwater resources concealed beneath the surface. This work was undertaken in greenfield areas, where the Exploring for the Future program had the greatest impact. This dataset depicts the geographical extents of the various projects undertaken as part of this program, with an indicative total spend for each
DOI: 10.5281/zenodo.7456077
title: scPDB BO1 subset (protein ligand-binding sites)

description: The BO1 subset of the scPDB database. BO1 consists in 766 pairs of non-redundant binding-sites<br> (383 similar pairs, 383 dissimilar pairs). BO1 was describbed in:<br> ---<br> Eguida, M., & Rognan, D. (2020).<br> A computer vision approach to align and compare protein cavities:<br> application to fragment-based drug design.<br> Journal of Medicinal Chemistry, 63(13), 7127-7142.<br> https://doi.org/10.1021/acs.jmedchem.0c00422<br> --- The scPDB was recently describbed in:<br> ---<br> Desaphy, J., Bret, G., Rognan, D., & Kellenberger, E. (2015).<br> sc-PDB: a 3D-database of ligandable binding sites—10 years on.<br> Nucleic acids research, 43(D1), D399-D404.<br> https://doi.org/10.1093/nar/gku928<br> --- The scPDB is available at:<br> http://bioinfo-pharma.u-strasbg.fr/scPDB/<br>
DOI: 10.5281/zenodo.7456076
title: scPDB BO1 subset (protein ligand-binding sites)

description: The BO1 subset of the scPDB database. BO1 consists in 766 pairs of non-redundant binding-sites<br> (383 similar pairs, 383 dissimilar pairs). BO1 was describbed in:<br> ---<br> Eguida, M., & Rognan, D. (2020).<br> A computer vision approach to align and compare protein cavities:<br> application to fragment-based drug design.<br> Journal of Medicinal Chemistry, 63(13), 7127-7142.<br> https://doi.org/10.1021/acs.jmedchem.0c00422<br> --- The scPDB was recently describbed in:<br> ---<br> Desaphy, J., Bret, G., Rognan, D., & Kellenberger, E. (2015).<br> sc-PDB: a 3D-database of ligandable binding sites—10 years on.<br> Nucleic acids research, 43(D1), D399-D404.<br> https://doi.org/10.1093/nar/gku928<br> --- The scPDB is available at:<br> http://bioinfo-pharma.u-strasbg.fr/scPDB/<br>
DOI: 10.5281/zenodo.7455989
title: Dynamic analysis of pathogenesis and a suppression function of TREM2-dependent macrophages in skin fibrosis

description: Systemic sclerosis (SSc) is a chronic and incurable autoimmune disease with high mortality rates, and fibrosis is the distinguishing hallmark in the pathogenesis. Identification of the precise, time dependent composition of stromal and immune cells may provide clues for the establishment of new biomarkers and therapeutic approaches targeting SSc fibrosis. Here, the temporal dynamics of pathological process in a mouse model of skin fibrosis is investigated using single-cell RNA-sequencing (scRNA-seq). we collected skin single cell suspensions for transcriptome profiling by scRNA-seq from four time points after BLM-treatment (day 3, 7, 14, and 28) and untreated control skin (day 0) with on average three replicate mice per time point, and repeated once at each time point.{mouse_SSc_scRNAseq_day0_sample1_B1_1, mouse_SSc_scRNAseq_day3_sample1_B2_1, mouse_SSc_scRNAseq_day3_sample2_B2_2, mouse_SSc_scRNAseq_day7_sample1_B3_1, mouse_SSc_scRNAseq_day7_sample2_B3_2, mouse_SSc_scRNAseq_day14_sample1_B4_1, mouse_SSc_scRNAseq_day14_sample2_B4_2, mouse_SSc_scRNAseq_day28_sample1_B5_1, mouse_SSc_scRNAseq_day28_sample2_B5_2}
DOI: 10.5281/zenodo.7455988
title: Dynamic analysis of pathogenesis and a suppression function of TREM2-dependent macrophages in skin fibrosis

description: Systemic sclerosis (SSc) is a chronic and incurable autoimmune disease with high mortality rates, and fibrosis is the distinguishing hallmark in the pathogenesis. Identification of the precise, time dependent composition of stromal and immune cells may provide clues for the establishment of new biomarkers and therapeutic approaches targeting SSc fibrosis. Here, the temporal dynamics of pathological process in a mouse model of skin fibrosis is investigated using single-cell RNA-sequencing (scRNA-seq). we collected skin single cell suspensions for transcriptome profiling by scRNA-seq from four time points after BLM-treatment (day 3, 7, 14, and 28) and untreated control skin (day 0) with on average three replicate mice per time point, and repeated once at each time point.{mouse_SSc_scRNAseq_day0_sample1_B1_1, mouse_SSc_scRNAseq_day3_sample1_B2_1, mouse_SSc_scRNAseq_day3_sample2_B2_2, mouse_SSc_scRNAseq_day7_sample1_B3_1, mouse_SSc_scRNAseq_day7_sample2_B3_2, mouse_SSc_scRNAseq_day14_sample1_B4_1, mouse_SSc_scRNAseq_day14_sample2_B4_2, mouse_SSc_scRNAseq_day28_sample1_B5_1, mouse_SSc_scRNAseq_day28_sample2_B5_2}
DOI: 10.5517/ccdc.csd.cc2bz7l5
title: CCDC 2174017: Experimental Crystal Structure Determination

description: Related Article: Zhi-Chen Wu, Dale L. Boger|2022|J.Org.Chem.|87|16829|doi:10.1021/acs.joc.2c02687
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c1lvw
title: CCDC 2176288: Experimental Crystal Structure Determination

description: Related Article: Niklas Geue, Tom S. Bennett, Alexandra-Ana-Maria Arama, Lennart A. I. Ramakers, George F. S. Whitehead, Grigore A. Timco, P. B. Armentrout, Eric J. L. McInnes, Neil A. Burton, Richard E. P. Winpenny, Perdita E. Barran|2022|J.Am.Chem.Soc.|144|22528|doi:10.1021/jacs.2c07522
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c1lxy
title: CCDC 2176290: Experimental Crystal Structure Determination

description: Related Article: Niklas Geue, Tom S. Bennett, Alexandra-Ana-Maria Arama, Lennart A. I. Ramakers, George F. S. Whitehead, Grigore A. Timco, P. B. Armentrout, Eric J. L. McInnes, Neil A. Burton, Richard E. P. Winpenny, Perdita E. Barran|2022|J.Am.Chem.Soc.|144|22528|doi:10.1021/jacs.2c07522
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c1lyz
title: CCDC 2176291: Experimental Crystal Structure Determination

description: Related Article: Niklas Geue, Tom S. Bennett, Alexandra-Ana-Maria Arama, Lennart A. I. Ramakers, George F. S. Whitehead, Grigore A. Timco, P. B. Armentrout, Eric J. L. McInnes, Neil A. Burton, Richard E. P. Winpenny, Perdita E. Barran|2022|J.Am.Chem.Soc.|144|22528|doi:10.1021/jacs.2c07522
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c1lz0
title: CCDC 2176292: Experimental Crystal Structure Determination

description: Related Article: Niklas Geue, Tom S. Bennett, Alexandra-Ana-Maria Arama, Lennart A. I. Ramakers, George F. S. Whitehead, Grigore A. Timco, P. B. Armentrout, Eric J. L. McInnes, Neil A. Burton, Richard E. P. Winpenny, Perdita E. Barran|2022|J.Am.Chem.Soc.|144|22528|doi:10.1021/jacs.2c07522
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c1m02
title: CCDC 2176293: Experimental Crystal Structure Determination

description: Related Article: Niklas Geue, Tom S. Bennett, Alexandra-Ana-Maria Arama, Lennart A. I. Ramakers, George F. S. Whitehead, Grigore A. Timco, P. B. Armentrout, Eric J. L. McInnes, Neil A. Burton, Richard E. P. Winpenny, Perdita E. Barran|2022|J.Am.Chem.Soc.|144|22528|doi:10.1021/jacs.2c07522
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c79xv
title: CCDC 2181777: Experimental Crystal Structure Determination

description: Related Article: Yu Zhang, Linlin Wu, Hao Wang|2022|J.Am.Chem.Soc.|144|22446|doi:10.1021/jacs.2c11204
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c79zx
title: CCDC 2181779: Experimental Crystal Structure Determination

description: Related Article: Yu Zhang, Linlin Wu, Hao Wang|2022|J.Am.Chem.Soc.|144|22446|doi:10.1021/jacs.2c11204
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c7b0z
title: CCDC 2181780: Experimental Crystal Structure Determination

description: Related Article: Yu Zhang, Linlin Wu, Hao Wang|2022|J.Am.Chem.Soc.|144|22446|doi:10.1021/jacs.2c11204
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c7b10
title: CCDC 2181781: Experimental Crystal Structure Determination

description: Related Article: Yu Zhang, Linlin Wu, Hao Wang|2022|J.Am.Chem.Soc.|144|22446|doi:10.1021/jacs.2c11204
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8htz
title: CCDC 2182921: Experimental Crystal Structure Determination

description: Related Article: Thomas J. Gately, Cameron Cook, Raghad Almuzarie, Imadul Islam, Zachary Gardner, Robbie J. Iuliucci, Rabih O. Al-Kaysi, Gregory J. O. Beran, Christopher J. Bardeen|2022|Cryst.Growth Des.|22|7298|doi:10.1021/acs.cgd.2c00930
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8hv0
title: CCDC 2182922: Experimental Crystal Structure Determination

description: Related Article: Thomas J. Gately, Cameron Cook, Raghad Almuzarie, Imadul Islam, Zachary Gardner, Robbie J. Iuliucci, Rabih O. Al-Kaysi, Gregory J. O. Beran, Christopher J. Bardeen|2022|Cryst.Growth Des.|22|7298|doi:10.1021/acs.cgd.2c00930
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8hw1
title: CCDC 2182923: Experimental Crystal Structure Determination

description: Related Article: Thomas J. Gately, Cameron Cook, Raghad Almuzarie, Imadul Islam, Zachary Gardner, Robbie J. Iuliucci, Rabih O. Al-Kaysi, Gregory J. O. Beran, Christopher J. Bardeen|2022|Cryst.Growth Des.|22|7298|doi:10.1021/acs.cgd.2c00930
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8hx2
title: CCDC 2182924: Experimental Crystal Structure Determination

description: Related Article: Thomas J. Gately, Cameron Cook, Raghad Almuzarie, Imadul Islam, Zachary Gardner, Robbie J. Iuliucci, Rabih O. Al-Kaysi, Gregory J. O. Beran, Christopher J. Bardeen|2022|Cryst.Growth Des.|22|7298|doi:10.1021/acs.cgd.2c00930
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8hy3
title: CCDC 2182925: Experimental Crystal Structure Determination

description: Related Article: Thomas J. Gately, Cameron Cook, Raghad Almuzarie, Imadul Islam, Zachary Gardner, Robbie J. Iuliucci, Rabih O. Al-Kaysi, Gregory J. O. Beran, Christopher J. Bardeen|2022|Cryst.Growth Des.|22|7298|doi:10.1021/acs.cgd.2c00930
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8hz4
title: CCDC 2182926: Experimental Crystal Structure Determination

description: Related Article: Thomas J. Gately, Cameron Cook, Raghad Almuzarie, Imadul Islam, Zachary Gardner, Robbie J. Iuliucci, Rabih O. Al-Kaysi, Gregory J. O. Beran, Christopher J. Bardeen|2022|Cryst.Growth Des.|22|7298|doi:10.1021/acs.cgd.2c00930
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8j06
title: CCDC 2182927: Experimental Crystal Structure Determination

description: Related Article: Thomas J. Gately, Cameron Cook, Raghad Almuzarie, Imadul Islam, Zachary Gardner, Robbie J. Iuliucci, Rabih O. Al-Kaysi, Gregory J. O. Beran, Christopher J. Bardeen|2022|Cryst.Growth Des.|22|7298|doi:10.1021/acs.cgd.2c00930
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8j17
title: CCDC 2182928: Experimental Crystal Structure Determination

description: Related Article: Thomas J. Gately, Cameron Cook, Raghad Almuzarie, Imadul Islam, Zachary Gardner, Robbie J. Iuliucci, Rabih O. Al-Kaysi, Gregory J. O. Beran, Christopher J. Bardeen|2022|Cryst.Growth Des.|22|7298|doi:10.1021/acs.cgd.2c00930
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8j28
title: CCDC 2182929: Experimental Crystal Structure Determination

description: Related Article: Thomas J. Gately, Cameron Cook, Raghad Almuzarie, Imadul Islam, Zachary Gardner, Robbie J. Iuliucci, Rabih O. Al-Kaysi, Gregory J. O. Beran, Christopher J. Bardeen|2022|Cryst.Growth Des.|22|7298|doi:10.1021/acs.cgd.2c00930
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8j39
title: CCDC 2182930: Experimental Crystal Structure Determination

description: Related Article: Thomas J. Gately, Cameron Cook, Raghad Almuzarie, Imadul Islam, Zachary Gardner, Robbie J. Iuliucci, Rabih O. Al-Kaysi, Gregory J. O. Beran, Christopher J. Bardeen|2022|Cryst.Growth Des.|22|7298|doi:10.1021/acs.cgd.2c00930
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c8j4b
title: CCDC 2182931: Experimental Crystal Structure Determination

description: Related Article: Thomas J. Gately, Cameron Cook, Raghad Almuzarie, Imadul Islam, Zachary Gardner, Robbie J. Iuliucci, Rabih O. Al-Kaysi, Gregory J. O. Beran, Christopher J. Bardeen|2022|Cryst.Growth Des.|22|7298|doi:10.1021/acs.cgd.2c00930
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.