cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.nymgum
title: Occurrence Download

description: A dataset containing 353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuscuta pentagona Engelm.",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 353 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082609-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53xhmx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuscuta pentagona Engelm.",
 "Country is Israel",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082607-250525065834625/datasets/export for details.
DOI: 10.15468/dl.dp4dws
title: Occurrence Download

description: A dataset containing 1470 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Netta rufina (Pallas, 1773)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 1470 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082610-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34847/nkl.6c7009o6
title: Liste des DOI des illustrations de Cesc dans la revue Por Favor

description: Ce fichier csv contient deux colonnes :
- Title : titre de la donnée telle qu'on la trouve dans Nakala
- DOI : DOI de la donnée provenant de Nakala
DOI: 10.15468/dl.mxwrff
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuscuta pentagona Engelm.",
 "Country is Kiribati",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082612-250525065834625/datasets/export for details.
DOI: 10.15468/dl.bq64mn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuscuta pentagona Engelm.",
 "Country is Kyrgyzstan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082613-250525065834625/datasets/export for details.
DOI: 10.15468/dl.kg64et
title: Occurrence Download

description: A dataset containing 10983 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Nettapus auritus (Boddaert, 1783)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 10983 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082614-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wyjsg7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuscuta pentagona Engelm.",
 "Country is Kenya",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082611-250525065834625/datasets/export for details.
DOI: 10.15468/dl.djwct3
title: Occurrence Download

description: A dataset containing 24 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 countrycode countrycode,
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, countrycode, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, countrycode, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, countrycode, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, countrycode, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, countrycode, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, countrycode, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.taxonkey = 2223830 OR occurrence.acceptedtaxonkey = 2223830 OR occurrence.kingdomkey = 2223830 OR occurrence.phylumkey = 2223830 OR occurrence.classkey = 2223830 OR occurrence.orderkey = 2223830 OR occurrence.familykey = 2223830 OR occurrence.genuskey = 2223830 OR occurrence.specieskey = 2223830)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL AND occurrence.hascoordinate = TRUE)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year",
 occurrence.countrycode

 The dataset's 24 records were derived from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082600-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqcze4
title: Occurrence Download

description: A dataset containing 3663 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Material citation, Specimen, Occurrence evidence)",
 "Continent is one of (North America, South America)",
 "TaxonKey is Kyphosidae"
 ]
}

 The dataset includes 3663 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082615-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bdhp3w
title: Occurrence Download

description: A dataset containing 1011 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "GadmGid is CHN.15.8_1",
 "OccurrenceStatus is Present",
 "Year 1000-2025"
 ]
}

 The dataset includes 1011 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082616-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5vdbu5
title: Occurrence Download

description: A dataset containing 1374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Newtonia amphichroa Reichenow, 1891",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 1374 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082618-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9qz83
title: Occurrence Download

description: A dataset containing 29246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Material citation, Specimen, Occurrence evidence)",
 "Continent is one of (North America, South America)",
 "TaxonKey is Serranidae"
 ]
}

 The dataset includes 29246 records from 181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082617-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sn3dhu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuscuta pentagona Engelm.",
 "Country is Lesotho",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082619-250525065834625/datasets/export for details.
DOI: 10.15468/dl.74k69e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuscuta pentagona Engelm.",
 "Country is Montenegro",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082620-250525065834625/datasets/export for details.
DOI: 10.15468/dl.pzzgdv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuscuta pentagona Engelm.",
 "Country is Nigeria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082621-250525065834625/datasets/export for details.
DOI: 10.15468/dl.8zzj8e
title: Occurrence Download

description: A dataset containing 412 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-90.51042 -1.35684,-90.42453 -1.37911,-90.39962 -1.35817,-90.36648 -1.32185,-90.34713 -1.28315,-90.35005 -1.26062,-90.36754 -1.25134,-90.37258 -1.2463,-90.39087 -1.24233,-90.39882 -1.22165,-90.41923 -1.19753,-90.47092 -1.20124,-90.52924 -1.26141,-90.51042 -1.35684))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acanthuridae"
 ]
}

 The dataset includes 412 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082622-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78r4uk
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lemurodendron capuronii Villiers & P.Guinet"
 ]
}

 The dataset includes 41 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082623-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29442059
title: hdf5

description: Understanding how immune cells organize within tissue microenvironments is essential for interpreting disease responses in spatial proteomics data. We introduce SNOWFLAKE, a graph neural network pipeline that integrates single-cell protein expression and morphological features to predict disease status from lymphoid follicles. Using a pediatric COVID-19 dataset, SNOWFLAKE outperformed conventional machine learning and deep learning approaches in classifying infection status. By incorporating morphology into graph edge features, SNOWFLAKE enables the identification of spatially organized subgraphs associated with disease. These subgraphs, derived from single-cell neighborhoods, display clear distinctions between COVID-positive and negative cases and reveal interpretable cellular motifs. SNOWFLAKE’s ability to extract meaningful subgraph embeddings highlights its value in understanding immune architecture and its alterations in disease. The approach generalizes across tissue types, including breast cancer and tertiary lymphoid structures, underscoring its utility for spatial systems biology and biomarker discovery from multiplex imaging data.
DOI: 10.6084/m9.figshare.29442059.v1
title: hdf5

description: Understanding how immune cells organize within tissue microenvironments is essential for interpreting disease responses in spatial proteomics data. We introduce SNOWFLAKE, a graph neural network pipeline that integrates single-cell protein expression and morphological features to predict disease status from lymphoid follicles. Using a pediatric COVID-19 dataset, SNOWFLAKE outperformed conventional machine learning and deep learning approaches in classifying infection status. By incorporating morphology into graph edge features, SNOWFLAKE enables the identification of spatially organized subgraphs associated with disease. These subgraphs, derived from single-cell neighborhoods, display clear distinctions between COVID-positive and negative cases and reveal interpretable cellular motifs. SNOWFLAKE’s ability to extract meaningful subgraph embeddings highlights its value in understanding immune architecture and its alterations in disease. The approach generalizes across tissue types, including breast cancer and tertiary lymphoid structures, underscoring its utility for spatial systems biology and biomarker discovery from multiplex imaging data.
DOI: 10.15468/dl.hq2rdh
title: Occurrence Download

description: A dataset containing 16879 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)"
 ]
}

 The dataset includes 16879 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082624-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbuqyj
title: Occurrence Download

description: A dataset containing 442 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-90.41124 -1.21235,-90.43404 -1.19973,-90.49667 -1.22271,-90.51335 -1.25134,-90.53538 -1.31051,-90.48566 -1.37723,-90.37158 -1.37852,-90.35679 -1.35334,-90.34137 -1.27277,-90.36372 -1.25011,-90.38858 -1.24225,-90.41124 -1.21235))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chaetodontidae"
 ]
}

 The dataset includes 442 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082627-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s4mnb9
title: Occurrence Download

description: A dataset containing 915 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Newtonia archboldi Delacour & Berlioz, 1931",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 915 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082625-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fansnq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuscuta pentagona Engelm.",
 "Country is Niue",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082628-250525065834625/datasets/export for details.
DOI: 10.15468/dl.6pes78
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuscuta pentagona Engelm.",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082629-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.29275199.v1
title: Peptide immunoarrays for rationale development of vaccines with enhanced cross-reactivity

description: We determined epitope-specific IgG antibody responses in convalescent plasma of ferrets challenged with ancestral SARS-CoV-2 and compared that to plasma collected pre-infection. Each plasma sample was reacted with a high-density peptide microarray representing the complete proteome of SARS-CoV-2 as 15 mer peptides with 11 amino acid overlap and homologs of spike glycoprotein, nucleoprotein, membrane protein, and envelope small membrane protein from related human coronaviruses. Binding signatures were compared between plasma collected pre- and post-infection using the web service tool EPIphany.Blood was collected into lithium-heparin blood collection tubes from ferrets prior to virus exposure and 4 weeks post-infection. After centrifugation, plasma was transferred into a new tube and stored at -80C. Plasma samples were thawed once before use in immunoarray assays. Peptide microarrays were blocked in Tris-buffered saline (TBS), pH 7.2 supplemented with 0.05% v/v Tween-20 (TBS-T) and 3% w/v bovine serum albumin fraction V (BSA; diluent) for 30 min. Plasma was diluted 1:100 in diluent and incubated for 2 h. Each array was washed with 5 exchanges of TBS-T, and once with sterile deionized distilled water. Plasma IgG antibodies were detected using Alexa Fluor 647 conjugated goat anti-ferret IgG, Fc(gamma) fragment specific antibody (Jackson ImmunoResearch, 109-605-098) diluted to 1 μg/mL in diluent and incubated for 45 min in the dark. Washes were carried out as previously described, and slides dried by centrifugation for 5 min at 800×g.Peptide microarrays were imaged using a GenePix Professional 4200A microarray scanner (MDS Analytical Technologies, Toronto ON, Canada) equipped with a 635 nm laser and fluorescence captured using a 655 to 695 nm filter. Images were scanned at 10 µm resolution and data acquired using GenePix software (version 6.0). Data pre-processing and analysis was performed using the web-based service EPIphany <br>
DOI: 10.6084/m9.figshare.28950656.v1
title: Variation in hibernation patterns of a temperate zone mammal

description: Dataset associated with Crawford K, Orsman R, Parry L, O’Hagan T and Nowack J (2025) Variation in hibernation patterns of a temperate zone mammal <br>Dataset 1- Torpor bout duration and arousal duration over the hibernation season for individuals radio-tracked over winter 2023 along with ambient temperature on the day before the arousal.<br>Dataset 2 - Data collection for Figure 3 from a single individual, collected via automated box taking readings every 10 minutes, taking skin temperature from attached radio tag, showing a typical hibernation pattern of torpor and arousal.<br>Dataset 3 - Night survey dates and individuals captured over the study period of a year, including average temperatures monthly, with a breakdown of male, female and juveniles captured on each survey.
DOI: 10.15468/dl.k7j29c
title: Occurrence Download

description: A dataset containing 427 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "OccurrenceStatus is Present",
 "TaxonKey is Podiceps taczanowskii von Berlepsch & Stolzmann, 1894"
 ]
}

 The dataset includes 427 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082631-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28551986.v1
title: NIH Funding for CHARGE Syndrome Research, 2000-2024

description: This is an Excel (.xlsx) data file of CHARGE syndrome related funding from the National Institutes of Health in the United States from 2000 to 2024.
DOI: 10.15468/dl.xzvz6d
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuscuta pentagona Engelm.",
 "Country is Saudi Arabia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082630-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.29275199
title: Peptide immunoarrays for rationale development of vaccines with enhanced cross-reactivity

description: We determined epitope-specific IgG antibody responses in convalescent plasma of ferrets challenged with ancestral SARS-CoV-2 and compared that to plasma collected pre-infection. Each plasma sample was reacted with a high-density peptide microarray representing the complete proteome of SARS-CoV-2 as 15 mer peptides with 11 amino acid overlap and homologs of spike glycoprotein, nucleoprotein, membrane protein, and envelope small membrane protein from related human coronaviruses. Binding signatures were compared between plasma collected pre- and post-infection using the web service tool EPIphany.Blood was collected into lithium-heparin blood collection tubes from ferrets prior to virus exposure and 4 weeks post-infection. After centrifugation, plasma was transferred into a new tube and stored at -80C. Plasma samples were thawed once before use in immunoarray assays. Peptide microarrays were blocked in Tris-buffered saline (TBS), pH 7.2 supplemented with 0.05% v/v Tween-20 (TBS-T) and 3% w/v bovine serum albumin fraction V (BSA; diluent) for 30 min. Plasma was diluted 1:100 in diluent and incubated for 2 h. Each array was washed with 5 exchanges of TBS-T, and once with sterile deionized distilled water. Plasma IgG antibodies were detected using Alexa Fluor 647 conjugated goat anti-ferret IgG, Fc(gamma) fragment specific antibody (Jackson ImmunoResearch, 109-605-098) diluted to 1 μg/mL in diluent and incubated for 45 min in the dark. Washes were carried out as previously described, and slides dried by centrifugation for 5 min at 800×g.Peptide microarrays were imaged using a GenePix Professional 4200A microarray scanner (MDS Analytical Technologies, Toronto ON, Canada) equipped with a 635 nm laser and fluorescence captured using a 655 to 695 nm filter. Images were scanned at 10 µm resolution and data acquired using GenePix software (version 6.0). Data pre-processing and analysis was performed using the web-based service EPIphany <br>
DOI: 10.6084/m9.figshare.28950656
title: Variation in hibernation patterns of a temperate zone mammal

description: Dataset associated with Crawford K, Orsman R, Parry L, O’Hagan T and Nowack J (2025) Variation in hibernation patterns of a temperate zone mammal <br>Dataset 1- Torpor bout duration and arousal duration over the hibernation season for individuals radio-tracked over winter 2023 along with ambient temperature on the day before the arousal.<br>Dataset 2 - Data collection for Figure 3 from a single individual, collected via automated box taking readings every 10 minutes, taking skin temperature from attached radio tag, showing a typical hibernation pattern of torpor and arousal.<br>Dataset 3 - Night survey dates and individuals captured over the study period of a year, including average temperatures monthly, with a breakdown of male, female and juveniles captured on each survey.