cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7927907
title: Supporting Data for "Hamiltonian Phase Error in Resonantly Driven CNOT Gate Above the Fault-Tolerant Threshold"

description: Supporting data for Wu, YH., Camenzind, L.C., Noiri, A. et al. Hamiltonian phase error in resonantly driven CNOT gate above the fault-tolerant threshold. npj Quantum Inf 10, 8 (2024). https://doi.org/10.1038/s41534-023-00802-9

Abstract:

Because of their long coherence time and compatibility with industrial foundry processes, electron spin qubits are a promising platform for scalable quantum processors. A full-fledged quantum computer will need quantum error correction, which requires high-fidelity quantum gates. Analyzing and mitigating gate errors are useful to improve gate fidelity. Here, we demonstrate a simple yet reliable calibration procedure for a high-fidelity controlled-rotation gate in an exchange-always-on Silicon quantum processor, allowing operation above the fault-tolerance threshold of quantum error correction. We find that the fidelity of our uncalibrated controlled-rotation gate is limited by coherent errors in the form of controlled phases and present a method to measure and correct these phase errors. We then verify the improvement in our gate fidelities by randomized benchmark and gate-set tomography protocols. Finally, we use our phase correction protocol to implement a virtual, high-fidelity, controlled-phase gate.
DOI: 10.5281/zenodo.7927908
title: Supporting Data for "Hamiltonian Phase Error in Resonantly Driven CNOT Gate Above the Fault-Tolerant Threshold"

description: Supporting data for Wu, YH., Camenzind, L.C., Noiri, A. et al. Hamiltonian phase error in resonantly driven CNOT gate above the fault-tolerant threshold. npj Quantum Inf 10, 8 (2024). https://doi.org/10.1038/s41534-023-00802-9

Abstract:

Because of their long coherence time and compatibility with industrial foundry processes, electron spin qubits are a promising platform for scalable quantum processors. A full-fledged quantum computer will need quantum error correction, which requires high-fidelity quantum gates. Analyzing and mitigating gate errors are useful to improve gate fidelity. Here, we demonstrate a simple yet reliable calibration procedure for a high-fidelity controlled-rotation gate in an exchange-always-on Silicon quantum processor, allowing operation above the fault-tolerance threshold of quantum error correction. We find that the fidelity of our uncalibrated controlled-rotation gate is limited by coherent errors in the form of controlled phases and present a method to measure and correct these phase errors. We then verify the improvement in our gate fidelities by randomized benchmark and gate-set tomography protocols. Finally, we use our phase correction protocol to implement a virtual, high-fidelity, controlled-phase gate.
DOI: 10.5281/zenodo.10467553
title: Data for "New insights into the sources of atmospheric organic aerosols in East China: a comparison of online molecule-level and bulk measurements"

description: These are the data used in the work "New insights into the sources of atmospheric organic aerosols in East China: a comparison of online molecule-level and bulk measurements". Currently the manuscript is submitted to JGR-A.
DOI: 10.5281/zenodo.10467554
title: Data for "New insights into the sources of atmospheric organic aerosols in East China: a comparison of online molecule-level and bulk measurements"

description: These are the data used in the work "New insights into the sources of atmospheric organic aerosols in East China: a comparison of online molecule-level and bulk measurements". Currently the manuscript is submitted to JGR-A.
DOI: 10.6084/m9.figshare.24987042.v1
title: epiTCR-KDA - Datasets: DA_TSVFiles

description: epiTCR-KDA: Knowledge Distillation model on Dihedral Angles for TCR-peptide prediction
DOI: 10.6084/m9.figshare.24987042
title: epiTCR-KDA - Datasets: DA_TSVFiles

description: epiTCR-KDA: Knowledge Distillation model on Dihedral Angles for TCR-peptide prediction
DOI: 10.5519/qd.9sgylwmf
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5750259 records)
DOI: 10.26179/fv03-xs43
title: Survey Report For IAGP Work At Casey, 1984
DOI: 10.26179/xg63-xf97
title: Helicopter aerial photogrammetry surveys of Davis station and Vestfold Hills
DOI: 10.26183/0f5e-1935
title: Learning to play racquet sports: the embodied experiences of individuals in pickle ball

description: This study aims to address gaps in the leisure-based literature related to participation in racquet sport programs as adults. This will provide an insight into the experiences that prevent or encourage the pursuit of leisure activities.
<p>The dataset contains transcripts from qualitative interviews.
<p>This data is not publishable due to ethics restrictions. To discuss this research please contact the principal author Nicole Peel n.peel@westernsydney.edu.au ORCID 0000-0003-0806-1230.
DOI: 10.6084/m9.figshare.24707598
title: Spatiotemporal_dynamics_and_determinants_of_ciliate_community_in_neSCS_Communitydata.txt

description: Data from: Biogeography patterns of ciliates community from continental shelf to deep basin in northeastern South China Sea: Effects of Temporal, Spatial and Environmental Factors. The diversity and distribution of ciliates in the northeastern South China Sea were investigated in summer and winter. The effects of spatial, temporal, and environmental factors on ciliate community were studied, and the determining mechanism of ciliate distribution from continental shelf to the deep basin were revealed.
DOI: 10.6084/m9.figshare.24707598.v2
title: Spatiotemporal_dynamics_and_determinants_of_ciliate_community_in_neSCS_Communitydata.txt

description: Data from: Biogeography patterns of ciliates community from continental shelf to deep basin in northeastern South China Sea: Effects of Temporal, Spatial and Environmental Factors. The diversity and distribution of ciliates in the northeastern South China Sea were investigated in summer and winter. The effects of spatial, temporal, and environmental factors on ciliate community were studied, and the determining mechanism of ciliate distribution from continental shelf to the deep basin were revealed.
DOI: 10.6084/m9.figshare.24707598.v1
title: Spatiotemporal_dynamics_and_determinants_of_ciliate_community_in_neSCS_Communitydata.txt

description: Data from: Biogeography patterns of ciliates community from continental shelf to deep basin in northeastern South China Sea: Effects of Temporal, Spatial and Environmental Factors. The diversity and distribution of ciliates in the northeastern South China Sea were investigated in summer and winter. The effects of spatial, temporal, and environmental factors on ciliate community were studied, and the determining mechanism of ciliate distribution from continental shelf to the deep basin were revealed.
DOI: 10.6084/m9.figshare.24987051
title: A comparative analysis of plastome evolution in autotrophic Piperales - additional plastome reconstructions

description: The manuscript titled 'A comparative analysis of plastome evolution in autotrophic Piperales' provides a review of all currently available plastomes of autotrophic Piperales, alongside new data for previously missing genera. We study plastome evolution while focusing on structural variation and explore multiple events of reading frame disruption. Our data highlight the IR-LSC junctions as potential marker for discrimination of various taxonomic levels.The here published data compliments the data available on GenBank. The plastome reconstructions provided here are based on sequence raw data available on the Sequence Read Archive (SRA). In our study, we have assembled the plastomes from this data and explore various topics of comparative genomics.The reconstructed plastomes are separated by accession and contain the information of the underlying sequence data in the form of the unique SRA identifier.
DOI: 10.5281/zenodo.7714651
title: Neural network kinetics

description: The folder contains the data for creating main figures and supplementary figures in the original paper.
DOI: 10.5281/zenodo.10494784
title: Neural network kinetics

description: The folder contains the data for creating main figures and supplementary figures in the original paper.
DOI: 10.5281/zenodo.7714650
title: Neural network kinetics

description: The folder contains the data for creating main figures and supplementary figures in the original paper.
DOI: 10.5281/zenodo.10494824
title: ФАЛСАФАДА РАМЗНИНГ ГНЕСОЛОГИК ТАХЛИЛИ
DOI: 10.5281/zenodo.10494825
title: ФАЛСАФАДА РАМЗНИНГ ГНЕСОЛОГИК ТАХЛИЛИ
DOI: 10.18112/openneuro.ds003643.v2.0.3
title: Le Petit Prince: A multilingual fMRI corpus using ecological stimuli
DOI: 10.5281/zenodo.10494832
title: KO'CHA BOLALARI BILAN IJTIMOIY ISH
DOI: 10.5281/zenodo.10494833
title: KO'CHA BOLALARI BILAN IJTIMOIY ISH
DOI: 10.26179/m353-z852
title: Data Report on 1981 Traverses From Casey For IAGP
DOI: 10.5281/zenodo.10494840
title: РАССМОТРЕНИЕ ЭКОНОМИЧЕСКИХ СИСТЕМ КАК ОБЪЕКТА РЕФОРМИРОВАНИЯ.
DOI: 10.5281/zenodo.10494841
title: РАССМОТРЕНИЕ ЭКОНОМИЧЕСКИХ СИСТЕМ КАК ОБЪЕКТА РЕФОРМИРОВАНИЯ.
DOI: 10.6084/m9.figshare.23819364
title: Data for the manuscript "Fish gill surface area can keep pace with metabolic oxygen requirements across body mass and temperature".

description: This is the dataset for the article "Fish gill surface area can keep pace with metabolic oxygen requirements across body mass and temperature" in <i>Functional Ecology. </i>
DOI: 10.5281/zenodo.10494846
title: THE THEORETICAL ISSUES OF THE STUDY OF PROVERBS, SAYINGS AND RIDDLES IN MODERN LINGUISTICS
DOI: 10.5281/zenodo.10494847
title: THE THEORETICAL ISSUES OF THE STUDY OF PROVERBS, SAYINGS AND RIDDLES IN MODERN LINGUISTICS
DOI: 10.5281/zenodo.10494646
title: Saliva Based Tuberculosis Detection : A Simple Rapid Test Using Antigen Ag38 of Mycobacterium tuberculosis Indonesia strain
DOI: 10.5281/zenodo.10494647
title: Saliva Based Tuberculosis Detection : A Simple Rapid Test Using Antigen Ag38 of Mycobacterium tuberculosis Indonesia strain
DOI: 10.5281/zenodo.10494850
title: Saliva Based Tuberculosis Detection : A Simple Rapid Test Using Antigen Ag38 of Mycobacterium tuberculosis Indonesia strain
DOI: 10.6084/m9.figshare.24987990.v1
title: STROBE-checklist-v4-cross-sectional Health-Related Quality of Life Among Warfarin Using Clients in a Cardiac Centre

description: STROBE-checklist-v4-cross-sectional Health-Related Quality of Life Among Warfarin Using Clients in a Cardiac Centre
DOI: 10.6084/m9.figshare.24987990
title: STROBE-checklist-v4-cross-sectional Health-Related Quality of Life Among Warfarin Using Clients in a Cardiac Centre

description: STROBE-checklist-v4-cross-sectional Health-Related Quality of Life Among Warfarin Using Clients in a Cardiac Centre
DOI: 10.26179/51sh-tx03
title: Enderby Land Field Program Daily Logs and Report, 1977/78
DOI: 10.5281/zenodo.10494780
title: Enhancer evolution across species and cancer
title: Emergence of new enhancers at late DNA replicating regions

description: Datasets used in the article “Emergence of new enhancers at late DNA replicating regions” (doi: https://doi.org/10.1101/2022.12.22.521323)

Species evolution

All human regions are given in hg19 coordinates, and mouse regions in mm10 coordinates. We gathered human enhancer and promoter regions from PMID: 25635462 and mouse enhancers from PMID: 33602314. Human enhancers were defined as regions enriched in H3K27ac but not H3K4me3, while promoters were regions enriched in H3K4me3. Mouse active enhancers were defined as regions enriched in H3K27ac and H3K4me1 but not H3K4me3. Poised enhancers were those regions enriched in H3K4me1 only. The fourth column of mouse enhancer files indicates the tissue(s) where the enhancers were identified, and the fifth column indicates the enhancer type (active or poised). 

 

human_conserved_enhancers_atLeast2otherSp_hg19.bed

human_conserved_promoters_atLeast2otherSp_hg19.bed

human_recent_enhancers_hg19.bed

human_recent_promoters_hg19.bed

mouse_conserved_atLeast2otherSp_mm10.bed

mouse_recent_mm10.bed

 

Cancer datasets

All regions are given in hg19 coordinates. All peaks were distal (> 1Kb) to TSSs.

Gained enhancers were defined as those present in cancer cells and not healthy cells.

Lost enhancers were those present in healthy cells and not cancer cells

Unchanged enhancers were present in both healthy and cancer cells

 

Prostate: PrEC chromatin mark data were used to define healthy candidate enhancers. Enhancers were defined as those regions classified as "Enhancer" in a ChromHMM model (Accession: GSE57498). Candidate cancer enhancers were defined using the union of H3K27ac and H3K4me1 ChIP-seq peaks in LNCaP (GEO Accessions: GSM1902615 and GSM1902616).

 

LNCaP_enh_gains_unique_hg19.bed                

PReC_enh_losses_unique_hg19.bed

PReC_enh_unchanged_unique_hg19.bed

 

Breast:  Candidate enhancers were defined as the union of H3K27ac and H3K4me1 peaks in breast cancer cell line MCF-7 and breast epithelium samples (ENCODE Accessions: ENCFF132IWN, ENCFF674BKS, ENCFF569TYE, ENCFF440IVB).

 

breast_cancer_gains_unique_hg19.bed

breast_cancer_losses_unique_hg19.bed

breast_cancer_unchanged_unique_hg19.bed

 

AML: Candidate enhancers were defined in pre-leukemic and blast cells using matched ATAC-seq data from three individuals (GEO Accession: GSE74912; SU484, SU501, SU654).

 

gains_AML_union_1kb_hg19.bed

losses_AML_union_1kb_hg19.bed

unchanged_AML_union_1kb_hg19.bed

 

Thyroid: Candidate enhancers were defined in cancer and healthy thyroid using matched ATAC-seq data from three individuals (GEO Accession: GSE162515; C1, C7, C8)

 

gains_thyroid_union_1kb_hg19.bed

losses_thyroid_union_1kb_hg19.bed

unchanged_thyroid_union_1kb_hg19.bed
DOI: 10.5281/zenodo.10494781
title: Enhancer evolution across species and cancer
title: Emergence of new enhancers at late DNA replicating regions

description: Datasets used in the article “Emergence of new enhancers at late DNA replicating regions” (doi: https://doi.org/10.1101/2022.12.22.521323)

Species evolution

All human regions are given in hg19 coordinates, and mouse regions in mm10 coordinates. We gathered human enhancer and promoter regions from PMID: 25635462 and mouse enhancers from PMID: 33602314. Human enhancers were defined as regions enriched in H3K27ac but not H3K4me3, while promoters were regions enriched in H3K4me3. Mouse active enhancers were defined as regions enriched in H3K27ac and H3K4me1 but not H3K4me3. Poised enhancers were those regions enriched in H3K4me1 only. The fourth column of mouse enhancer files indicates the tissue(s) where the enhancers were identified, and the fifth column indicates the enhancer type (active or poised). 

 

human_conserved_enhancers_atLeast2otherSp_hg19.bed

human_conserved_promoters_atLeast2otherSp_hg19.bed

human_recent_enhancers_hg19.bed

human_recent_promoters_hg19.bed

mouse_conserved_atLeast2otherSp_mm10.bed

mouse_recent_mm10.bed

 

Cancer datasets

All regions are given in hg19 coordinates. All peaks were distal (> 1Kb) to TSSs.

Gained enhancers were defined as those present in cancer cells and not healthy cells.

Lost enhancers were those present in healthy cells and not cancer cells

Unchanged enhancers were present in both healthy and cancer cells

 

Prostate: PrEC chromatin mark data were used to define healthy candidate enhancers. Enhancers were defined as those regions classified as "Enhancer" in a ChromHMM model (Accession: GSE57498). Candidate cancer enhancers were defined using the union of H3K27ac and H3K4me1 ChIP-seq peaks in LNCaP (GEO Accessions: GSM1902615 and GSM1902616).

 

LNCaP_enh_gains_unique_hg19.bed                

PReC_enh_losses_unique_hg19.bed

PReC_enh_unchanged_unique_hg19.bed

 

Breast:  Candidate enhancers were defined as the union of H3K27ac and H3K4me1 peaks in breast cancer cell line MCF-7 and breast epithelium samples (ENCODE Accessions: ENCFF132IWN, ENCFF674BKS, ENCFF569TYE, ENCFF440IVB).

 

breast_cancer_gains_unique_hg19.bed

breast_cancer_losses_unique_hg19.bed

breast_cancer_unchanged_unique_hg19.bed

 

AML: Candidate enhancers were defined in pre-leukemic and blast cells using matched ATAC-seq data from three individuals (GEO Accession: GSE74912; SU484, SU501, SU654).

 

gains_AML_union_1kb_hg19.bed

losses_AML_union_1kb_hg19.bed

unchanged_AML_union_1kb_hg19.bed

 

Thyroid: Candidate enhancers were defined in cancer and healthy thyroid using matched ATAC-seq data from three individuals (GEO Accession: GSE162515; C1, C7, C8)

 

gains_thyroid_union_1kb_hg19.bed

losses_thyroid_union_1kb_hg19.bed

unchanged_thyroid_union_1kb_hg19.bed
DOI: 10.6084/m9.figshare.24460528.v1
title: Padua daily temperature 1980-2022

description: Daily minimum and maximum temperature measurements collected in Padua, Italy, between 1980 and 2022, are reported. Over this period, the weather station of Padua center underwent many changes, in location or instrument; therefore, some homogeneity tests have been used to identify and remove the effects of these variations and obtain a homogeneous time series. Both absolute and relative tests have been applied and several nearby stations and two reanalysis datasets (ERA5 and MERIDA) have been considered, to enhance the picture of the local situation and provide more robust conclusions. The original observations and the final complete corrected time series with the associated metadata are reported.OB_UNIPD contains daily minimum and maximum temperature collected at the Botanical Garden between 01/01/1980 and 31/12/1993 by the University of Padua;OB_micros_UNIPD contains daily minimum and maximum temperatures collected at the Botanical Garden between 01/10/1993 and 13/12/2001 by the University of Padua using a <i>MICROS</i> weather station;OB_ARPAV contains daily minimum and maximum temperatures collected at the Botanical Garden between 01/05/2000 and 10/03/2019 by ARPAV;CUS_ARPAV contains daily minimum and maximum temperatures collected at the University Sports Center between 11/03/2019 and 30/06/2023 by ARPAV;OB_FINAL_SERIES contains the homogenized daily minimum and maximum temperatures between 01/01/1980 and 30/06/2023, using OB_ARPAV as reference. Metadata are also indicated, reporting the source of each value. The meaning of the metadata codes is reported in OB_FINAL_SERIES_metadata
DOI: 10.25345/c55h7c49k
title: MassIVE MSV000093846 - GNPS-compositae_MN library_positive_240112
title: These datasets are files for the quantification and qualification of compounds to compare selective compounds from Compositae.
DOI: 10.6084/m9.figshare.24988119.v1
title: The Optical Intra-day Variability of BL Laceratae Object 2200+420

description: Between October 12 and October 25 of 2022, more than 3800 useful images were obtained by the 1.0 m telescope at Weihai Observatory of Shandong University.
DOI: 10.6084/m9.figshare.24988119
title: The Optical Intra-day Variability of BL Laceratae Object 2200+420

description: Between October 12 and October 25 of 2022, more than 3800 useful images were obtained by the 1.0 m telescope at Weihai Observatory of Shandong University.
DOI: 10.5281/zenodo.10494932
title: Dataset of Quantitative characterization on volatility distribution of organic aerosol in a polluted urban area: intercomparison between thermodenuder and molecular measurements

description: The dataset of paper of "Quantitative characterization on volatility distribution of organic aerosol in a polluted urban area: intercomparison between thermodenuder and molecular measurements"
DOI: 10.5281/zenodo.10494933
title: Dataset of Quantitative characterization on volatility distribution of organic aerosol in a polluted urban area: intercomparison between thermodenuder and molecular measurements

description: The dataset of paper of "Quantitative characterization on volatility distribution of organic aerosol in a polluted urban area: intercomparison between thermodenuder and molecular measurements"
DOI: 10.6084/m9.figshare.23805027
title: Map activity recognition dataset

description: Unzip <b>Map_Data</b> at the same level as the <b><i>M</i></b><b><i>ap.ipynb</i></b> file.Data description: include only the feature set after eye movement and EEG preprocessing(1) All feature sets (entire trial/time window) are named: <i>ET+EEG_features_xxx.xlsx.</i>(2) The results of the comparison of different classifiers and feature selection methods are named: <i>diff_clf(fs)_result.xlsx</i>.(3) 5 feature sets (for 1000ms time window with 500ms overlay) are named: <i>all_features_(window_start_time)-</i><i>(window_end_time)</i><i>ms.xlsx.</i><b>Please note that we have not disclosed all raw ET and EEG data given the volume of raw data and concerns about the privacy of participants. Please contact the authors at their email address for further enquiries.</b>
DOI: 10.6084/m9.figshare.23805027.v1
title: Map activity recognition dataset

description: Unzip <b>Map_Data</b> at the same level as the <i><b>M</b></i><i><b>ap.ipynb</b></i> file.Data description: include only the feature set after eye movement and EEG preprocessing(1) All feature sets (entire trial/time window) are named: <i>ET+EEG_features_xxx.xlsx.</i>(2) The results of the comparison of different classifiers and feature selection methods are named: <i>diff_clf(fs)_result.xlsx</i>.(3) The best model results obtained from each hyper parameter tuning are in the subfolder: <i>Map_Data/Wholetrial(TimeWindow)/</i><b>Please note that we have not disclosed all raw ET and EEG data given the volume of raw data and concerns about the privacy of participants. Please contact the authors at their email address for further enquiries.</b>
DOI: 10.5281/zenodo.8300370
title: Towards Efficient Program Repair with APR Tools Based on Genetic Algorithms

description: This dataset contains experimental results and related artifacts.
DOI: 10.5281/zenodo.8300371
title: Towards Efficient Use of APR Tools Based on Genetic Algorithms

description: This dataset contains experimental results shown in our submission for review.
DOI: 10.5281/zenodo.8307490
title: Towards Efficient Program Repair with APR Tools Based on Genetic Algorithms

description: This dataset contains experimental results and related artifacts.
DOI: 10.6084/m9.figshare.24988047
title: β-Carotene Supplementation Improves Pancreas Function during Moderate Ethanol Consumption: Initial Characterization from a Morphological Overview

description: β-Carotene Supplementation Improves Pancreas Function during Moderate Ethanol Consumption: Initial Characterization from a Morphological Overview
DOI: 10.6084/m9.figshare.24988047.v1
title: β-Carotene Supplementation Improves Pancreas Function during Moderate Ethanol Consumption: Initial Characterization from a Morphological Overview

description: β-Carotene Supplementation Improves Pancreas Function during Moderate Ethanol Consumption: Initial Characterization from a Morphological Overview
DOI: 10.23729/0c2a16e4-4109-422e-ad29-77ef5c4570a6
title: JYFL-ACCLAB-M15 Decays of Isomeric States near the Proton Drip Line
title: JYFL-ACCLAB-M15 Decays of Isomeric States near the Proton Drip Line

description: This proposal requests beam time to discover and measure the decay properties of high-spin multiparticle isomeric states in the spherical proton emitters 155Ta82 and 156Ta83. The measurements will firmly establish the properties of new isomers and their decay paths to lower-lying states and allow the decay properties of the known proton-emitting states in these nuclei to be measured with higher precision. The proposed experiment will also search for the anticipated 27/2- isomer in 155Hf83 and measure the isomer half-life. This will allow the dependence of B(E2) values on the occupation of the (pi)h11/2 sub shell to be extended towards the proton drip line and provide valuable constraints for shell model calculations. We will also use these measurements to assess the feasibility of measuring the rare two-proton radioactive decay mode from isomers in heavy nuclei by searching for the 10+ seniority isomer in 156W82.