DOI: 10.6084/m9.figshare.24057261.v1
title: Data associated with manuscript

description: Data associated with main analysis and figures presented in manuscript titled: "Long-term organic farming and floral diversity promotes stability of bee communities in agroecosystems." Dataset titled: "Bloom_BetaDiverstiy_GPSPointsAndSiteCharacteristics_DataFinal.csv" are associated with the map of site locations shown in Figure 1. These data are also given in Table 2 (note no data are associated with Table 1). GPS points have been jittered to protect the identity of farmer collaborators. Exact locations are available upon request and after consideration by the lead author. No data are associated with Figure 2. The four datasets tilted: "Bloom_BetaDiversity_GeometricRemovalXXX_DataFinal.csv" are files associated with the geometric species removal analysis accompanying Figure 3, where XXX is the scale (local or landscape) and term (species loss or removal) (see manuscript for details). Column definitions include: SiteID - the site for which the statistic was generated (local level only); SiteID1 - the first site involved in the pairwise comparison which generated the statistic (landscape level only); SiteID2 - the second site involved in the pairwise comparison which generated the statistic (landscape level only); year1 - the year (e.g., 20XX) for which the sample was taken at the site given in SiteID1 which then generated the statistic (landscape level only); year2 - the year (e.g., 20XX) for which the sample was taken at the site given in SiteID2 which then generated the statistic (landscape level only); variable - species removed at random; sim (replacement) or sne (loss) - the statistic with no species removed; value - the statistics with the species removed; vec - the color relating the number of species removed (see Figure 3 caption for column species number relationships). The dataset title: "Bloom_BetaDiverstiy_SADS_DataFinal.xlsx" contains three sheets each associated with a sample year (2014, 2015, 2016). Within each sheet are the vectors of abundance values and species names used to create species abundance models plotted in Figure 4. The datasets titled: "Bloom_BetaDiverstiy_LocalLevelRegressions_DataFinal.csv" and "Bloom_BetaDiverstiy_LandscapeLevelRegressions_DataFinal" contain statistics used to create Figure 5. The column name definitions that have not been previously given are as follows: detlaaic - difference in species abundance model fit (for local level); Years.Since.Transition - years since transitioning to organic farming scaled to enhance regression model fitting; sor - the overall Sorenson's beta diversity term for bees across years or sites (depends on scale see file name); sim - the species replacement term from the additive partition of Sorenson's beta diversity for bees across years or sites (depends on scale see file name); nes - the species loss term from the additive partition of Sorenson's beta diversity for bees across years or sites (depends on scale see file name); X.sor/X.sim/S.nes - where X is l and p for landscape and plant beta diversity for each term at the site across years or sites (depends on scale see file name); diff_years - differences in times since transitions to organic agriculture scaled to enhance regression model fitting (landscape level only); diff_do_new - difference in species abundance model fit (for landscape level); p.all - multiplication of the p.sim and l.nes terms for plotting the interaction shown in Figure 5d. The dataset titled: "Bloom_BetaDiverstiy_Jackknife_DataFinal.xlsx" contains 6 sheets corresponding to Figure 6 panels "a-f" in linear order. Column definitions include: pvalue - the pvalue found when the variable was removed from the site by variable matrix and used to create the histograms; variable - the variable that was removed from the site by variable matrix. Variables can be bee species, landscape classes, or plants given by their unique common name. The final 3 datasets are titled: "Bloom_BetaDiverstiy_BeeSiteXSpeciesMatrix_DataFinal.csv", "Bloom_BetaDiverstiy_LandscapeSiteXClassMatrix_DataFinal.csv", and "Bloom_BetaDiverstiy_PlantSiteXCommonNameMatrix_DataFinal.csv." These datasets contain the matrices used to generate these bee, landscape, and plant beta diversity metrics used for our analysis.