cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12382685.v1
title: Dataset for the manuscript "Identification of leukemic and pre-leukemic stem cells by clonal tracking from single-cell transcriptomics"

description: Data accompanying Velten, Story, Hernandez et al., 2021. zip file containing this README and MutaSeq.final.seurat.RDS<br> - a single Seurat (v3.1.4) object containing the following <b>ASSAYS</b>:* RNA: Raw count data (slot: counts), data normalized individually for each patient using default seurat routines (slot: data)* integrated: Scanorama corrected data.<br>* FACS: FACS index values for surface antigens. Logicle transformation was applied where appropriate<br>* counts.mutant.P1: For all mutations analyzed for patient P1, counts of the MUTANT allele. Columns starting with X correspond to mitochondrial sites.* counts.reference.P1: For all mutations analyzed for patient P1, counts of the REFERENCE allele.* PhiSICS.Likelihood.P1: For each cell, likelihood to attach to a given node in the phylogenetic tree (see manuscript figure 2).* PhiSCS.Summarised.P1: Likelihood summarised by main clones (i.e. leukemic.KLF7, leukemic.CEBPA, preleukemic, T.cell.clone, non-leukemic)<br>* counts.mutant.P2: For all mutations analyzed for patient P2, counts of the MUTANT allele. Columns starting with X correspond to mitochondrial sites.* counts.reference.P2: For all mutations analyzed for patient P2, counts of the REFERENCE allele.* PhiSICS.Likelihood.P2: For each cell, likelihood to attach to a given node in the phylogenetic tree (see manuscript figure 2).* PhiSCS.Summarised.P2: Likelihood summarised by main clones (i.e. leukemic, preleukemic, non-leukemic)<br>and the following <b>REDUCTIONS</b>:* scanorama: Scanorama result.* tsne: Computed from scanorama.* umap: Computed from scanorama.<br>and the following <b>METADATA</b> columns:* nCount_RNA: Number of reads mapping to exons.* nFeature_RNA: Number of genes observed.* Plate: Processing plate* patient: Patient* mainClone: Maximum likelihood estimate of the clone the cell belongs to. Also includes estimated clone for P3 and P4, see manuscript figure 4.* Cancer: Boolean variable to distinguish cells that are likely leukemic/preleukemic (TRUE) from other cells (FALSE). Cells with no observations from P3 and P4 are NA.
DOI: 10.6084/m9.figshare.14303209.v1
title: International Classification of Functioning in professional rehabilitation: instruments for assessing work disability

description: ABSTRACT OBJECTIVE To review the main instruments of functional assessment and health status cited in the literature to evaluate Brazilian workers and verify the compatibility of their items with the core set for professional rehabilitation. METHODS A review of the literature was conducted in the main databases in search of articles that used assessment instruments in populations of workers between 2007 and 2017. Subsequently, the contents of the identified instruments were retrieved, and two evaluators analyzed their items to verify the compatibility with the categories of the core set of the International Classification of Functioning for professional rehabilitation. Cohen’s kappa coefficient was used to evaluate the agreement between the evaluators. RESULTS Five specific and eight generic instruments were selected to evaluate the functioning of workers. The analysis of the items of the total instruments allowed the definition of 58 categories (64.5%) of the core set with minimal overlap: 13 (76.5%) of the body functions component, 29 (72.5%) of the activities and participation component and 16 (49%) environmental factors. CONCLUSIONS The association of several instruments requires time and makes it difficult to use the classification. The development of instruments with direct association with its categories is essential to operationalize it.
DOI: 10.6084/m9.figshare.20984461.v1
title: Global distribution and diversity of alien Ponto-Caspian amphipods

description: The file in .csv format contains distribution data (locality, country, GPS coordinates, and drainage) for all Ponto-Caspian amphipods that are known to occur outside the native area.
DOI: 10.6084/m9.figshare.21901416.v2
title: Xiamen Flooding

description: Datafiles for figures
DOI: 10.17632/rbm3ybxz54
title: Pulmonary exacerbations in early CF lung disease

description: Background: In chronic cystic fibrosis (CF) lung disease, neutrophilic inflammation and T-cell inhibition occur concomitantly, partly due to neutrophil-mediated release of the T-cell inhibitory enzyme Arg1. However, the onset of this tonic inhibition of T cells, and the impact of pulmonary exacerbations (PEs) on this process remains unknown.
Methods: Children with CF aged 0-5 years were enrolled in a longitudinal cohort study at Emory University. Blood (n = 35) and BAL fluid (n = 18) were collected at stable outpatient clinic visits or inpatient PE hospitalizations and analyzed by flow cytometry (for immune cell presence and phenotype) and 20-plex chemiluminescence assay (for immune mediators). Patients were categorized by PE history into no prior PE, past history of PE prior to stable visit, or current PE.
Results: PEs were associated with increased concentration of both pro- and anti-inflammatory mediators in BAL and increased neutrophil frequency and G-CSF in circulation. PE BAL samples showed a trend for an increased frequency of hyperexocytic GRIM neutrophils previously identified in chronic CF. When comparing the expression of the T-cell receptor associated molecule CD3 and the inhibitory programmed death-1 (PD-1) receptor on T cells from bronchoalveolar lavage (BAL) vs. blood samples, we found that CD3 was significantly decreased and PD-1 expression was increased across the board in all patients.  When categorized by PE status, there was no difference in CD3 or PD-1 expression on the circulating blood T cells, but CD3 expression was decreased, and PD-1 was increased on BAL T cells from current PE samples.
Conclusions: These data suggest that airway T cells are engaged during early-life PEs prior to the onset of chronic neutrophilic inflammation. However, increased neutrophil frequency in circulation and trend towards increasing frequency of GRIM neutrophils in the airway offers new insights into the mechanisms of how childhood PEs may accelerate airway inflammation and shift the balance of airway immune cells towards neutrophil dominance.
DOI: 10.17632/snm79nw3pg
title: Dataset for the statistical modelling of occupant behavior in mixed-mode office buildings considering the number of occupants and architectural features

description: Research objective: This research aimed to investigate and compare the influence of the number of occupants and architectural features on occupant behaviour, in relation to air-conditioning activation and window opening in mixed-mode office buildings. Method overview: The method consisted in an 18-month monitoring campaign in the city of São Carlos, SP, Brazil, to collect data on the selected environmental factors, as well as the studied behaviours. The collected data was post-processed and used to create statistical models to predict each action, window opening and air-conditioning activation. The models use environmental data and architectural features, as well as the number of users in each office, to predict the probability of use of each control. Files description: Raw_RH_Temp: This Excel file contains the sheets of all the data imported from the Meteorological Station of São Carlos in terms of outdoor variables for each month during the measuring campaign (October 2017 – May 2019). They are here presented without any changes (raw data), thus contain only the hourly data. Although the maximum and minimum values for temperature and relative humidity (RH) are also presented to better represent the local climate, only the instantaneous values (for temperature and RH) were used to develop the model. The Meteorological Station provides only the hourly data. Treated_Temp: This Excel file contains the sheets of the treated outdoor temperature (C°) for each month (October 2017 – May 2019). The “I” tables contain the raw data, while the “II” tables contain the data with the Macro code applied – which enabled the data to be fitted into the 10-minute interval. Treated_RH: This Excel file contains the sheets of the outdoor relative humidity (RH; in %) for each month (October 2017 – May 2019). The “I” columns contain the raw data, while the “II” tables contain the data with the Macro code applied - which enabled the data to be fitted into the 10-minute interval. Treated Data_Offices: The folder Treated Data_Offices contains the treated data set that was used to build the models. Within this folder there are folders for each of the offices within the data set. The tables within each folder are respective to the period of time when the monitoring campaign occurred in that office. The data used for the models were taken after filters were applied. These filters were meant to select hours of work (8:30a.m. to 6p.m.), weekdays, and excluded holidays and non-occupied days according to occupants’ reports. Lines highlighted in the AC State column indicate where the calculation was not accurate, and thus manually overwritten according to the AC Temperatures seen on the graphs. Architectural Features: This file contains all the architectural features collected from the six studied offices. The variables office ID, number of occupants and Window orientation were included in the statistical models created.
DOI: 10.17632/wgyrgt7n5j
title: Mechanical testing data of "3D-Printed PEEK/Silicon Nitride Scaffolds with Triply Periodic Minimal Surface Structure for Spinal Fusion Implants"

description: Mechanical testing data of "3D-Printed PEEK/Silicon Nitride Scaffolds with Triply Periodic Minimal Surface Structure for Spinal Fusion Implants".
DOI: 10.17632/zmxssj8w38
title: A PiFM spectral library for the identification of molecular contaminants in geochemical laboratories

description: Photo-induced Force Microscopy (PiFM) is a nanoanalytical technique that merges the simultaneous acquisition of Atomic Force Microscopy (AFM) topographic data with infrared (IR) phase identification. By using the attractive forces between a sample surface and a sharp, metal-coated cantilever tip mounted on an AFM, PiFM achieves a spatial resolution of approximately 5 nm when illuminated with a tunable IR laser (Nowak et al., 2016; Otter et al., 2021). Due to its high sensitivity that allows for the detection of molecular monolayers, PiFM is particularly effective for identifying and visualizing phases on the nanoscale, making it an excellent complement to other nanoscale imaging and elemental analysis techniques such as Scanning/Transmission Electron Microscopy (S/TEM) and Atom Probe Tomography (e.g., Otter et al., 2023).
 Sample preparation for PiFM poses significant challenges that must be overcome for artifact-free imaging andaccurate interpretation. This is critical as the materials used for mounting, polishing, and storing can leave molecular traces on the sample surfaces, which can complicate data interpretation. Hence, this spectral library presents PiFM spectra of traditional sample preparation and storage materials that will help identify and avoid potential contamination sources during analyses. 
 The spectral library tab (Sup Table 1) includes the averages and first standard deviations (± 1s) of all measurments, normalized to the highest intensity for all measured sample preparation and storage materials for the three laser wavenumber ranges 755-1875 cm-1 (Block Engineering quantum cascade laser), 2000-2400 cm-1 (DRS Daylight Solutions MIRcat quantum cascade laser), and 2400-4400 cm-1 (EKSPLA PT200 optical parametric oscillator). The tab following the spectral library lists the analysed products (Sup Table 2).
 
References:
Förster, M. W., Chen, C., Foley, S. F., Alard, O., Yaxley, G. M. (2024). Fluid loss to the fore-arc controls the recycling efficiency of nitrogen in subduction zones. Chemical Geology, 121985.
Nowak D., Morrison W., Wickramasinghe H.K., Jahng J., Potma E., Wan L., Ruiz R., Albrecht T.R., Schmidt K., Frommer J., Sanders D.P. and Park S. (2016) Nanoscale chemical imaging by photoinduced force microscopy. Science Advances, 2, e1501571.
Otter, L.M., Förster, M.W., Belousova, E., O’Reilly, P., Nowak, D., Park, S., Clark, S., Foley, S.F., Jacob, D.E. (2021) GGR Cutting-Edge Review: Nanoscale Chemical Imaging by Photo-Induced Force Microscopy: Technical Aspects and Application to the Geosciences. Geostandards and Geoanalytical Research, 45(1), 5-27.
Otter, L. M., Eder, K., Kilburn, M. R., Yang, L., O’Reilly, P., Nowak, D. B., Cairney, J. M., Jacob, D. E. (2023). Growth dynamics and amorphous-to-crystalline phase transformation in natural nacre. Nature Communications, 14(1), 2254.
DOI: 10.6084/m9.figshare.1391937.v1
title: Rainwater Harvesting Technologies in Makueni County, Kenya

description: Rainwater harvesting has been in existence for many years and has positively impacted life,<br>agriculture and economy. Despite these known benefits of rainwater harvesting, Makueni County’s population<br>is slowly adopting rainwater harvesting technologies. Water scarcity still remains a major constraint to life and<br>economic development in the County. The aim of this paper is to evaluate rainwater harvesting technologies and<br>the factors contributing to adoption of the technologies in the ASAL areas with Makueni County being the case<br>study. The study was conducted in Wanzauni and Itetani locations in Tulimani division, Mbooni West district,<br>Makueni County within Kenya’s Eastern Region which lies within the arid and semi arid ecological zones of<br>Kenya. A total of 160 household questionnaires were administered, focus group discussions and key informants<br>interviews done during data collection exercise. The data was analyzed using Statistical package for social<br>scientists (SPSS). Various rainwater harvesting technologies (RWHTs) are used within Makueni County<br>including macro-catchment (earth dams, sand/sub-surface dams), micro-catchment (Zai pits, strip catchment,<br>tillage, contour and semi-circular bunds) and rooftop rainwater harvesting technologies with rooftop catchment<br>being the most commonly used technique. However, adoption of these RWHTs in Makueni County is slow<br>irrespective of their potential to improve livelihoods. A logistic regression analysis was conducted to predict<br>factors affecting adoption of RWHTs within 160 households in Makueni County. Some of the factors found to<br>have statistically-significant positive effect on the adoption of RWHT are gender, literacy levels, social and<br>economic status and technological know-how on RWHT. Ways of promoting the adoption of RWHTs such as<br>capacity building and training, poverty alleviation through enhancement of income generation activities,<br>enhanced formation of community groups aimed at water development activities, and improved designs<br>incorporating mechanized technologies in favour of women and children, are recommended.
DOI: 10.6084/m9.figshare.21844230.v1
title: Ratcliffe et al. 2023 - Extreme Precipitation Promotes Invasion in Managed Grasslands

description: This repository contains data and replication code for "Extreme Precipitation Promotes Invasion in Managed Grasslands" by Ratcliffe, Hugh; Kendig, Amy; Ahlering, Marissa; Carlson, Daren; Vacek, Sara; Dee, Laura. <br> The included data is a subset of the Grassland Monitoring Team dataset, collected from 2008 - 2019. These data were collected as part of a collaborative project which included the Minnesota Department of Nature Resources, the Nature Conservancy, and the US Fish and Wildlife Service. <br> Data are included for public record and are available for public use.<br> <strong>Repository Contents</strong><br> 1. <strong>GMT Extremes Analysis.Rmd</strong> - Contains all R code used to implement regressions and replicate results in manuscript. Instructions included within. <br> 2. <strong>Ratcliffe et. al 2023_GMT Data.csv</strong> - Includes all data necessary to replicate results from scratch. <br> 3. <strong>Ratcliffe et al. 2023_GMT Metadata.xlsx -</strong> Accompanying metadata and variable definitions for all variables found in Ratcliffe et. 2023_GMT Data.csv. <br> 4. <strong>2013_dnr_plant_status.xls</strong> - Supplemental file from the Minnesota Department of Natural Resources used to differentiate native versus invasive species. <br> 5. <strong>2013_dnr_plant_checklist.xls</strong> - Supplemental file from the Minnesota Department of Natural Resources used to identify indicator species. <br> 6. <strong>Vacek 2012 - GMT Protocols</strong> - Protocol used for the collection of the vegetation data. <br> Vacek, S., M. Cornett, D. Carlson, and M. Ahlering. 2016. Grassland Monitoring Team Standardized Monitoring Protocol. https://ecos.fws.gov/ServCat/Reference/Profile/26773 <br> For questions or use please contact the owner of this figshare repository, Hugh Ratcliffe, at hugh.ratcliffe@gmail.com.
DOI: 10.6084/m9.figshare.28594295.v3
title: Raman-ChEMBL-part2

description: Raman-ChEMBL-part2
DOI: 10.6084/m9.figshare.27215391.v2
title: <b>Raw database for "</b><b>Impact of system size on pattern transitions in dissolving rough fractures</b><b>"</b>

description: We supply the raw data used in our manuscript "<b>Control of system size on transition of dissolution patterns in rough fractures</b>".
DOI: 10.6084/m9.figshare.29093072.v2
title: supplementary information

description: All datasets, attached tables (including kinematic parameters, multidimensional feature extraction, stability analysis, confusion matrix of classification models involved in this study), and deep learning codes
DOI: 10.6084/m9.figshare.7056626.v3
title: SEC Global data

description: The folder contains maps of soil evaporation (Esmap.txt), evaporation of intercepted water (Eimap.txt) and the characteristic length (LCmap.txt) at global scale (480 x 1440 values for 120 times 360 degrees; latitude ranging from -60 to plus 60 degrees).<br>The file is organized as follows:for all 480 latitudes starting at -59.875 degrees (ending at +59.875) 1440 values for longitudes starting at coordinate -179.875 (ending at +179.875) are written (one value on each row).<br>Note that for evaporation the cumulative evaporation in mm over 8 years is given.<br>
DOI: 10.17632/5nnsfvzz3m
title: dataset for millet derived compound fight against diabietic protein alpha-amylase and human maltase gluco-amylase

description: This data description presents the bioactive compounds identified in the grains of little millets that act as ligands to inhibit the activity of the target proteins α-amylase and human maltase-glucoamylase and thus contribute to the treatment of metabolic disorders such as diabetes
DOI: 10.17632/c49hdpxvyw
title: Render Lighting Dataset: A Collection of Rendered Images with Varied Lighting Conditions using Blender Render Engines

description: This dataset consists of a wide range of 3D rendered images that showcase various 3D primitive shapes under different lighting conditions. These images have been created using Blender's Cycles and Eevee Render Engines, and there are a total of 63,648 RGB images available for researchers to use in their analysis and experimentation. The Blender source file has also been provided for easier reproducibility.

Each rendered image in the dataset features primitive shapes such as Cube, Cone, Cylinder (Hollow), Icosphere, Sphere (Subdivided Cube), and Torus, with additional geometry to enhance texture mapping and UV unwrapping.

The dataset offers six different lighting setups that include Area Light, Spot Light, Point Light, Tri Light (built-in addon), HDRI (Sunlight), and HDRI (Overcast). Additionally, each rendering has been adjusted using Blender's Color Management panel, with View Transform and Look options tailored to four distinct settings: AGX (None), AGX (Punchy), Filmic (None), and Filmic (High Contrast).

With 17 different camera angles capturing each rendered scene, researchers can explore the interplay between lighting, materials, and geometry from various perspectives. The dataset also includes 13 distinct materials, such as Rough Concrete, Fabric Denim, Fabric Leather, Clear Glass, Brushed Steel, Corroded Steel, Polished Gold, Gold Paint, Glossy Plastic, Coastal Sand, Cracked Mud, Terracotta, and Plywood. This diverse range of materials allows researchers to study material properties and visual aesthetics in great detail.

The Render Lighting Dataset is a valuable resource for advancing research in computer graphics, machine learning, and other related fields. Whether investigating rendering algorithms, studying material interactions, or developing computer vision models, this dataset provides a robust foundation for exploration and analysis.
DOI: 10.17632/nnhfcjmrvy
title: Application of a Crosslinked Polymer Skin Barrier Film

description: Application onto the skin of a crosslinked polymer skin barrier film
DOI: 10.17632/xymb9z8fg2
title: Data for: The visceral adiposity index is a predictor of incident nonalcoholic fatty liver disease: A population-based longitudinal study

description: NAGALA study data set.
DOI: 10.17632/ymtnk5rpf9
title: Birds flyways and spread of Hyalomma ticks in Europe

description: This study modelled the probability of introduction of Hyalomma marginatum into Europe by predicting the potential migratory routes of 27 bird species and the probability to carry immatures of the tick. Flyways were modelled as a spatio-temporal feature, at weekly intervals, using satellite-derived data of temperature and vegetal phenology, together with cost surfaces derived from speed and direction of the wind (years 2002-2018). The probability of moulting of the engorged nymphs was modelled as a linear relationship of the daily sum of temperatures after tick introduction by birds. Positive probabilities of tick introduction extend the known northern range of permanent populations to central and west France, and large portions of central Europe. The flight of birds into an area and thence the risk of introduction of H. marginatum is very heterogeneous, sites receiving “waves” of different bird species at diverse moments of the year. Therefore, there is not a clear slice of time for introduction, as it depends on the modelled behaviour of the bird species. The probability of introduction into Baltic and Nordic countries is small. We hypothesize that conditions of warmer climate might support permanent populations of H. marginatum if a high number of immatures are introduced. Active surveys in risky territories, where the tick is not yet established, are advisable for a rapid intervention.
DOI: 10.17632/7d2v5kczg8
title: Literature collection in the review paper titled "Fraud Detection at eBay" at Emerging Markets Review, VSI: Financial Fraud Analysis

description: This data set contains the literature collection in Tables 3-6 in the review paper titled "Fraud Detection at eBay" at Emerging Markets Review, VSI: Financial Fraud Analysis.
 
Selection Strategy and Overview of Topics. The related works are selected from keyword searching on each topic, e.g., “fraud detection”, “explainability GNN”, in Google Scholar and following well-curated fraud paper repository like https://github.com/safe-graph/graph-fraud-detection-papers that is constantly updated. 
 
In this review, we selectively reviewed the representative over 180 publications on topics of fraud detection (123 publications), explainability in GNN (18 publications), dynamic GNNs and inference (~35 publications), and behavioral user data in fraud detection (7 publications).
 
The research data element enables the readers to access our literature collection in a systematic way at ease and to perform operations such as sorting and searching. 

We also attached the bib.bib file for the readers' reference.