cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wxpted
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Gallinago hardwickii)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081348-250717081556266/datasets/export for details.
DOI: 10.15468/dl.ckbzxc
title: Occurrence Download

description: A dataset containing 49481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sporophila torqueola)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 49481 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029299-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16780549
title: Dataset – "Co-designing policy mixes and energy systems for residential building decarbonisation in Switzerland"

description: This dataset contains the techno-economic parameters used in the study:"Co-designing policy mixes and energy systems for residential building decarbonisation in Switzerland" (Aliana et al., 2025).

The dataset is provided as a single Excel file:Input_data_building_decarbonisation_Switzerland.xlsx

A detailed description of all sheets and parameter units is provided in the “README” sheet inside the Excel file.
DOI: 10.5281/zenodo.16780550
title: Dataset – "Co-designing policy mixes and energy systems for residential building decarbonisation in Switzerland"

description: This dataset contains the techno-economic parameters used in the study:"Co-designing policy mixes and energy systems for residential building decarbonisation in Switzerland" (Aliana et al., 2025).

The dataset is provided as a single Excel file:Input_data_building_decarbonisation_Switzerland.xlsx

A detailed description of all sheets and parameter units is provided in the “README” sheet inside the Excel file.
DOI: 10.15468/dl.ds34rg
title: Occurrence Download

description: A dataset containing 15791 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sweden",
 "License is CC0 1.0",
 "MediaType is Image",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 15791 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029298-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y9ync8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Drymophila ochropyga)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029302-250802193616735/datasets/export for details.
DOI: 10.15468/dl.n8ejfu
title: Occurrence Download

description: A dataset containing 13433 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sporopipes frontalis)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 13433 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029303-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48804/kgwtr8
title: Replication Data for: Walking Towards Psychosocial Well-being? Unveiling Psychosocial Impacts of a Group-Based Walking Program With and Without Cognitive Enrichment in Older Adults – A Mixed-Methods Randomized Controlled Trial

description: Replication data for the paper "Walking Towards Psychosocial Well-being? Unveiling Psychosocial Impacts of a Group-Based Walking Program With and Without Cognitive Enrichment in Older Adults – A Mixed-Methods Randomized Controlled Trial". This contains a dataset in csv format with the data on depression, positive well-being, social support and loneliness; and a dataset in sav format (SPSS) with data on self-perceived effects. Furthermore, an R script is included which was used for the linear mixed models.
DOI: 10.15468/dl.ckbksx
title: Occurrence Download

description: A dataset containing 2205673 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (FRA.11_1, FRA.13_1)",
 "Month is one of (January, December)",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 2205673 records from 660 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029267-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1133237
title: Digital Archive from an Archaeological Evaluation at B480, Chalgrove, Oxfordshire, September 2022

description: This collection consists of images, text, spreadsheets, databases, GIS and site record data from a trial-trench evaluation by Oxford Archaeology. Work occurred on Land off the B480, Chalgrove Oxfordshire, in September 2022. The trial trenching confirmed the presence of the enclosure system identified by the geophysical survey. Dating to the late Bronze Age-early Iron Age, the enclosure is likely to be associated with domestic or settlement activity. Features within the enclosure include postholes and storage pits.
DOI: 10.15468/dl.pjtb2e
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dampieria cyclophthalmus"
 ]
}

 The dataset includes 18 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029304-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pfhqjh
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Danio meghalayensis"
 ]
}

 The dataset includes 20 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029305-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nn7bct
title: Occurrence Download

description: A dataset containing 255 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Geometry POLYGON((11.64227 39.5481,11.7778 35.02154,14.00444 35.11662,13.98508 36.24893,16.17299 36.13955,15.96 39.05366,11.64227 39.5481))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Glaucostegus cemiculus, Mobula birostris, Plotosus lineatus, Ponticola cephalargoides, Ponticola syrman, Rhincodon typus, Leucoraja melitensis, Leucoraja circularis, Rostroraja alba, Isurus oxyrinchus, Pristis pectinata, Mustelus punctulatus, Xiphias gladius, Squatina oculata, Squatina aculeata, Isurus paucus, Pristis pristis, Mobula mobular, Epinephelus marginatus, Rhinobatos rhinobatos, Galeorhinus galeus, Gymnura altavela, Umbrina cirrosa, Squatina squatina, Squalus megalops, Sphyrna mokarran, Prionace glauca, Oxynotus centrina, Heptranchias perlo, Carcharhinus plumbeus, Carcharhinus falciformis, Lamna nasus, Alosa kessleri, Alosa caspia, Pomatoschistus minutus, Alosa algeriensis, Alosa vistonica, Alosa killarnensis, Alosa tanaica, Alosa maeotica, Alosa agone, Syngnathus abaster, Pomatoschistus microps, Cetorhinus maximus, Hippocampus guttulatus, Pomatoschistus tortonesei, Hippocampus hippocampus, Alosa macedonica, Carcharodon carcharias, Salmo salar, Pomatoschistus canestrinii, Petromyzon marinus, Aphanius iberus, Aphanius fasciatus, Anguilla anguilla, Acipenser sturio, Alosa alosa, Alosa fallax)"
 ]
}

 The dataset includes 255 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029307-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gv4x5r
title: Occurrence Download

description: A dataset containing 45038 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Nyctereutes procyonoides"
 ]
}

 The dataset includes 45038 records from 173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029309-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27236877
title: <b>Comparison of South African Potchefstroom Koekoek and commercial Lohman Brown chicken layers on egg quality traits</b>

description: Comparison of the egg characteristics between indigenous and commercial chickens.
DOI: 10.6084/m9.figshare.27236877.v3
title: <b>Comparison of South African Potchefstroom Koekoek and commercial Lohman Brown chicken layers on egg quality traits</b>

description: Comparison of the egg characteristics between indigenous and commercial chickens.
DOI: 10.23728/b2share.3e1c1cecb54f4e2ea36f5cf13e077f46
title: Data availability

description: Se han subido los documentos que avalan la elaboración, aprobación y ejecución del artículo.
DOI: 10.6084/m9.figshare.27236877.v2
title: <b>Comparison of South African Potchefstroom Koekoek and commercial Lohman Brown chicken layers on egg quality traits</b>

description: Comparison of the egg characteristics between indigenous and commercial chickens.
DOI: 10.15468/dl.hjq5e4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Drymophila ochropyga)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029310-250802193616735/datasets/export for details.
DOI: 10.15468/dl.vkbw5v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Drymophila ochropyga)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029311-250802193616735/datasets/export for details.
DOI: 10.15468/dl.euct8f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Drymophila ochropyga)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029313-250802193616735/datasets/export for details.
DOI: 10.48804/cqofbt
title: IOTA phase 2: temporal and external validation of ovarian cancer prediction in adnexal masses using ultrasound-based logistic regression models

description: This is the phase 2 of the IOTA study. This dataset contains the data of 1938 prospectively collected patients presenting with at least one persistent adnexal mass collected in 19 centers from eight countries between 2005 and 2007, who underwent surgery.
DOI: 10.15468/dl.dt5pv4
title: Occurrence Download

description: A dataset containing 173 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Stachyris grammiceps)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 173 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029312-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16779899
title: Deciphering chromatin architecture and dynamics in Plasmodium falciparum using the nucDetective pipeline

description: Abstract

High-resolution analysis of cellular chromatin structure is crucial for uncovering developmental and cell-type-specific regulatory networks. We developed the nucDetective pipeline to provide a comprehensive evaluation of nucleosome organisation. This involves assessing nucleosome positioning, occupancy, fuzziness, and array regularity. The pipeline was benchmarked by analysing the chromatin structure of the malaria-causing parasite Plasmodium falciparum (Pf) during its erythrocytic development cycle. Pf is characterised by a unique chromatin landscape, exhibiting unstable nucleosomes and a genomic AT-content exceeding 80%, which presents challenges for standard MNase-seq analysis of chromatin. The nucDetective pipeline provides specific, high-resolution nucleosome profiles for the different asexual stages of Pf, monitoring the dynamics of individual nucleosomes. In contrast to the current view, suggesting an irregular chromatin structure and lack of nucleosomal DNA, we demonstrate that the transcription start sites exhibit typical eukaryotic features, including +1 nucleosomes, upstream nucleosome-free regions, and phased nucleosome arrays downstream of the TSSs. The nucleosome repeat length varies globally from 176 bp to 185 bp depending on the developmental stage. Stage specific changes in nucleosome positioning occur locally in intergenic regulatory regions, which are characterized by specific histone modifications and variants. Dynamic nucleosomes correlate with DNA accessibility, gene expression and determine access to transcription factor binding sites in Pf. The highly regular chromatin structure, with stage-specific structural alterations, emphasises the important role of epigenetic mechanisms in regulating the complex life cycles of Pf.
description: Code (scripts.zip)  and annotation of Plasmodium falciparum (Annotation.zip) to reproduce the nucDetective v1.1 (nucDetective-1.1.zip) analysis as done in the research manuscript entitled "Deciphering chromatin architecture and dynamics in Plasmodium falciparum using the nucDetective pipeline". 

The folder "output_nucDetective" conains the complete output of the nucDetective analysis pipeline as generated by the "01_nucDetective_profiler.sh" and "02_nucDetective_inspector.sh" scripts.

Nucleosome coverage tracks, annotation of nucleosome positions and dynamic nucleosomes are deposited additonally in the folder "Pf_nucleosome_annotation_of_nucDetective".
DOI: 10.5281/zenodo.16779898
title: Deciphering chromatin architecture and dynamics in Plasmodium falciparum using the nucDetective pipeline

description: Abstract

High-resolution analysis of cellular chromatin structure is crucial for uncovering developmental and cell-type-specific regulatory networks. We developed the nucDetective pipeline to provide a comprehensive evaluation of nucleosome organisation. This involves assessing nucleosome positioning, occupancy, fuzziness, and array regularity. The pipeline was benchmarked by analysing the chromatin structure of the malaria-causing parasite Plasmodium falciparum (Pf) during its erythrocytic development cycle. Pf is characterised by a unique chromatin landscape, exhibiting unstable nucleosomes and a genomic AT-content exceeding 80%, which presents challenges for standard MNase-seq analysis of chromatin. The nucDetective pipeline provides specific, high-resolution nucleosome profiles for the different asexual stages of Pf, monitoring the dynamics of individual nucleosomes. In contrast to the current view, suggesting an irregular chromatin structure and lack of nucleosomal DNA, we demonstrate that the transcription start sites exhibit typical eukaryotic features, including +1 nucleosomes, upstream nucleosome-free regions, and phased nucleosome arrays downstream of the TSSs. The nucleosome repeat length varies globally from 176 bp to 185 bp depending on the developmental stage. Stage specific changes in nucleosome positioning occur locally in intergenic regulatory regions, which are characterized by specific histone modifications and variants. Dynamic nucleosomes correlate with DNA accessibility, gene expression and determine access to transcription factor binding sites in Pf. The highly regular chromatin structure, with stage-specific structural alterations, emphasises the important role of epigenetic mechanisms in regulating the complex life cycles of Pf.
description: Code (scripts.zip)  and annotation of Plasmodium falciparum (Annotation.zip) to reproduce the nucDetective v1.1 (nucDetective-1.1.zip) analysis as done in the research manuscript entitled "Deciphering chromatin architecture and dynamics in Plasmodium falciparum using the nucDetective pipeline". 

The folder "output_nucDetective" conains the complete output of the nucDetective analysis pipeline as generated by the "01_nucDetective_profiler.sh" and "02_nucDetective_inspector.sh" scripts.

Nucleosome coverage tracks, annotation of nucleosome positions and dynamic nucleosomes are deposited additonally in the folder "Pf_nucleosome_annotation_of_nucDetective".
DOI: 10.15468/dl.593nen
title: Occurrence Download

description: A dataset containing 1160335 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mammalia",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2021",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Country is United Kingdom of Great Britain and Northern Ireland",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1160335 records from 181 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029286-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1133817
title: Site Images and GIS Data from an Archaeological Evaluation at Kirton Sewage Works, Drunkard's Lane, Kirton, Suffolk, April 2021

description: This collection consists of site images and GIS data from an archaeological evaluation at Kirton Sewage Works, Drunkard's Lane, Kirton, Suffolk. The works were undertaken by Cotswold Archaeology in April 2021. Twenty-two trenches were excavated, with archaeological deposits identified in eleven. Of the twenty-four features, fourteen were ditches, nine were pits and one was a post hole. Only a few finds were recovered, with the majority of the features excavated devoid of datable material. Evidence for prehistoric activity included Late Bronze Age to Early Iron Age pottery recovered from a ditch in Trench 12 and several flakes of struck flint recovered from a pit and a post hole within Trench 13. The medieval activity was restricted to a single pit within Trench 15, which contained sherds from a single exceptionally large early Medieval jar/cooking pot.
DOI: 10.15468/dl.28z9bd
title: Occurrence Download

description: A dataset containing 268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Stachyris herberti)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 268 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029314-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.44uxcg
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bolitoglossa salvinii"
 ]
}

 The dataset includes 116 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029315-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aj93wv
title: Occurrence Download

description: A dataset containing 74889 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Cochlearia danica"
 ]
}

 The dataset includes 74889 records from 287 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029221-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.