cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15454/d7fo2t
title: A ready-to-use database for DADA2: Diat.barcode_rbcL_263bp_DADA2 based on Diat.barcode v10

description: This database is an adaptation for DADA2 of Diat.barcode v10. Length of sequences is 263 bp ------------------------- Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, David; Pfannkuchen, Martin; Trobajo, Rosa; Vasselon, Valentin; Wetzel, Carlos; Zimmermann, Jonas; Bouchez, Agnès, 2018, "Diat.barcode, an open-access barcode library for diatoms", https://doi.org/10.15454/TOMBYZ (2020-11-06)
DOI: 10.15454/e03znv
title: CIRCASA DELIVERABLE D1.5: "Pilot knowledge information system set up through the OCP"

description: Official release of the international knowledge information system with complete functionalities based on partner user feedbacks, integrated within the OCP.
DOI: 10.15454/eaphgt
title: RPG complété 2019 département 74

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 74. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/dldjvf
title: TE-related genes: annotation, characterisation, and expression.

description: This dataset contains the gene analysis workflow used to evaluate the genes expression and to find the genes potentially involved in the TEs transposition machinery. Also, it contains the gene annotation file (bed format), the proteome stem from (https://doi.org/10.1371/journal.pgen.1006777), and several gene expression tables based on the previously mentioned study's transcriptome. Finally, it contains the scripts, output table and genes lists from the proteome analysis which aim was to identify genes potentially linked to the TE transposition machinery based on extensive HMM profile search (concatenation of pfam32 and GyDB2.0). Download: In order to preserve the folder and file tree structure (easier to reproduce the analyses), select all the files and click on download (original format). The download of a .zip archive should start. Once downloaded, extract the contents of the archive.
DOI: 10.15454/e8v1nb
title: RPG complété 2018 département 76

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 76. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/efc7vp
title: Microfiltration itineraries annotated from the scientific litterature including both a removal of bacteria by microfiltration and a microfiltration unit operations

description: This dataset includes microfiltration itineraries annotated from the scientific litterature including both a removal of bacteria by microfiltration and a microfiltration unit operations.
DOI: 10.15454/ehnjnp
title: Raw fMRI data from 12 rats used in the manuscript "Mapping of hemodynamic responses to the sensorymotor stimulation in a rodent model: a BOLD fMRI study"

description: Raw data are from twelve male adult Wistar rats (Charles River Laboratories, Paris-France) weighing 300 ± 20g. Rats were initially anesthetized (induction) with 3% isoflurane and were maintained under 0,7-0.8% (sedation along with a muscle relaxation) during fMRI session. Each rat was submitted to two fMRI sessions: one with TE of 30 ms and and other with TE of 40 ms. For fMRI acquisition, electrodes were inserted subcutaneously in the palmar surface of the right hindpaw of each rat and electrical stimulation (current pulses with a 1.7 mA amplitude, 10 ms duration and 8 Hz frequency) was applied in a block-design starting with a resting period of 25s as a baseline followed by 25s stimulation, repeated 8 times. Ten 1-mm thick contiguous axial slices, from -6.36 mm to +2.64 mm to Bregma, were acquired with a two-shot gradient echo planar imaging (GE EPI) pulse sequence (2.56 cm2 FOV; 64x64 matrix size; a TR of 1000 ms; a flip angle of 50°) resulting in the pixel size of 0.4 mm. All imaging experiments were performed on a 4.7T Bruker (Biospec 47/40, Bruker, GmbH, Ettlingen,Germany) with a horizontal bore magnet equipped with a 12 cm gradient coil (Bruker BGA12, 400 mT/m) and interfaced to AVANCE III console. Two actively decoupled RF coils were used: a 7.2-cm diameter volume coil for transmission and a 2-cm diameter surface coil (Rapid Biomedical, Rimpar, Germany) positioned on the top of the animal's head for reception.
DOI: 10.15454/evlgra
title: N2O fluxes and soil mineral nitrogen contents - Innovative cropping systems

description: N2O fluxes and soil mineral nitrogen contents (NH4+ and NO3-) in cropping systems designed to meet both environmental and production goals: a French nitrogen field data set
DOI: 10.15454/ewsd6v
title: RPG complété 2019 département 15

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 15. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021
DOI: 10.15454/feq1z6
title: The discernible and hidden effects of clonality on the genotypic and genetic states of populations: improving our estimation of clonal rates

description: Partial clonality is widespread across the tree of life, but most population genetics models are designed for exclusively clonal or sexual organisms. This gap hampers our understanding of the influence of clonality on evolutionary trajectories and the interpretation of population genetics data. We performed forward simulations of diploid populations at increasing rates of clonality (c), analysed their relationships with genotypic (clonal richness, R, and distribution of clonal sizes, Pareto β) and genetic (FIS and linkage disequilibrium) indices, and tested predictions of c from population genetics data through supervised machine learning. Here are the numerical results form those simulations.
DOI: 10.15454/fufnvb
title: An appraisal of the role of compositional and ripening parameters on CO2 diffusivity in semi-hard cheese - CO2 diffusivity in semi-hard cheese in relation to temperature

description: value unavailable
DOI: 10.15454/fvkchj
title: O2 and CO2 permeability of self-assembled stratified polyethylene-organoclay films for food packaging applications - CO2 permeability of PE-clay nanocomposite in food packaging

description: value unavailable
DOI: 10.15454/gydogu
title: RPG complété 2019 département 33

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 33. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/hobuzh
title: VITAMIN project (VegetarIan Transition Argument ModellINg)

description: Data on individual decisions concerning food diet changes towards plant-based diets and their determinants: (1) 145 arguments from the web and grey literature (in English) in file "DEPOSIT_tab_arguments_animal-or-plant-based-diets_anonymized.tab", (2) results of an online survey with 1714 respondants in France (in French) in file "Vitamin - Questionnaire.tab", (3) 20 in-depth biographic interviews (1 in English, 19 in French) provided in the docx files and referenced in "data_Interviewee.tab".
DOI: 10.15454/dgsnrg
title: Impacts of Raindrops Increase Particle Sedimentation in a Sheet Flow

description: A laboratory experiment reproducing conditions close to sheet flow to test the effect of rainfall on particle sedimentation
DOI: 10.15454/dkxvac
title: PlantSyntenyViewer Brassicaea submission file

description: Submission file of Brassicaea botanic family (8 proto-chromosomes) in PlantSyntenyViewer
DOI: 10.15454/dy5fwd
title: Projet Artisols - Densité du bâti

description: Le projet ArtiSols, soutenu par la Région Occitanie et le Fonds Européen de Développement Régional (FEDER), s’inscrit dans une démarche d’évaluation et de qualification du processus d’artificialisation des sols en région Occitanie. Piloté par INRAE (UMR TETIS), ce projet rassemble des établissements de recherche (INRAE, CNRS, INPT), des services de l’État (DRAAF Occitanie) et de la Région Occitanie (Direction de l’Aménagement, du Foncier et de l’Urbanisme), et les aménageurs BRL et CACG. Les cartographies des densités de bâti sur la région Occitanie sont réalisées sur un maillage de 150 x 150 m, à partir de cartographies des espaces bâtis extraites automatiquement sur des images satellitaires SPOT 6/7. Ces fichiers vectoriels, sont proposés pour les années 2015 à 2019.
DOI: 10.15454/eboqd7
title: RPG complété 2018 département 52

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 52. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020
DOI: 10.15454/egcz5c
title: Performance of a non-invasive methodology for assessing oxygen diffusion in liquid and solid food products - Impact of temperature in DO2 of Miglyol 812 and water (data for water are taken from Wise

description: value unavailable
DOI: 10.15454/exdcht
title: RPG complété 2019 département 27

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 27. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/gtaoww
title: RPG complété 2019 département 40

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 40. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/h1pj5q
title: RawData Gautier-et-al EcolEvol

description: Hatching percentage of each pair of nematode/potato (each line is a replicate)
DOI: 10.15454/drqxsi
title: Phenology Data - INRAE Domaine d'Époisses - U2E 115 - BDD PHETEC

description: Ce modèle est défini pour la base de données PHETEC – Grandes cultures. Données d'observation de la phénologie de plusieurs cultures (Blé, Colza et Betterave) observées par l'Unité Expérimentale 115 d'Epoisses entre les années 1997 et 2008. Les données sont issues des parcelles qui n'ont pas été utilisés pour des expérimentations. Elles sont issues de la base de données Phetec et sont accessibles via le Portal de données TEMPO (https://tempo.pheno.fr/) Le fichier est composé de plusieurs feuilles. Les données de phénologie ont plusieurs métadonnées associées pour aider à leur compréhension.
DOI: 10.15454/f5xivj
title: FruitBreedomics apple 275K SNP genotypic data

description: This dataset contains SNP data obtained by using the Axiom®Apple480K array (Bianco et al., 2016) on 1355 apple accessions from nine mostly European institutions and 92 apple progeny individuals from two parental combinations. Among the accessions, 1341 are diploid, 12 are triploid, and two are doubled haploid. These data were mainly obtained in the frame of the EU seventh Framework Programme project FruitBreedomics: Integrated Approach for increasing breeding efficiency in fruit tree crops (http://www.fruitbreedomics.com/). These data were used in genome-wide association studies by Urrestarazu et al (2017) and Coupel-Ledru et al (2022). This dataset largely overlaps with the dataset “FruitBreedomics apple high-density SNP genotyping dataset” (doi:10.15454/IOPGYF) published earlier. Although released later, the present dataset was generated chronologically earlier than the other dataset with less pedigree-based verification of the Mendelian inheritance consistency of these 275K SNPs. The files with the suffix ".bed" are genotyping matrix in plink binary format, the files with the suffix ".bim" contain positions of loci in plink binary format and the files with the suffix ".fam" contain identifiers of the genotypes plink binary format. This format is described at http://zzz.bwh.harvard.edu/plink/data.shtml#bed.
DOI: 10.15454/ffngis
title: Focus groups

description: Data consist of sound recordings of 8 consumer groups (qualitative consumer study) conducted in France in June 2021 to provide information in the deliverable D4.1: open responses to questions regarding images and representations, motivations and barriers related to fermented (whey-based) drinks; reactions to the description of an idea of whey-based fermented drink; reactions to the description of 2 distribution modes (returnable bottles and bulk). The recordings contain personal data about consumers thus are confidential.
DOI: 10.15454/g3yp4o
title: List of unannotated papers from the scientific litterature in the filed of milk microfiltration using Milk Microfiltration ontology

description: This dataset contains the list of unannotated papers from the scientific litterature in the filed of milk microfiltration using Milk Microfiltration ontology. Those papers do not permit to answer the competency questions associated with this ontology (see the data paper for more information)..
DOI: 10.15454/et8mje
title: Genotyping data for ""Linkage mapping of biomass production and composition traits in a Miscanthus sinensis"

description: First genetic map aligned on reference.
DOI: 10.15454/fupob8
title: CIRCASA DELIVERABLE D1.1 “The Network map and dialogue”

description: This report shows the first stock-take of research networks and projects plus user guidance and is available for further future updating. It provides for (inter)relationship among and across networks identifying the relevant issues and participants.
DOI: 10.15454/hsonvg
title: New Copolyesters Based On Vanillic Acid

description: Agro-waste can be a source of molecules that can find exploitation in different fields. For example, aromatic molecules, such as vanillic acid, can be extracted and exploited as building blocks for the synthesis of new polymeric structures. Indeed, the aromatic ring can confer rigidity to the macromolecular chains and, then, good mechanical properties. In NoAW project the presence of vanillic acid in wine pomace has been revealed, even if the amount of it was too low and the mixture of components too complex to evaluate a separation of the molecules. However, vanillic acid can be found in other biomass or can be derived from vanillin, that is commercially available. Novel copolyesters, based on vanillic acid, have been successfully synthesized and characterized. The synthesis proceeds through a two-steps solvent-less polycondensation and seems suitable for an industrial upscaling. Random copolymers, characterized by the presence of -pentadecalactone as comonomer, are characterized by good thermal stability, a homogeneous amorphous phase and crystal phases that depend on the composition. The crystallization behavior resulted complex and spherulitic morphologies observed. In any case, copolymers present a lower degree of crystallinity with respect to the homopolymers, are processable and filmable. For this reason, they can be considered potential bio-based substitutes of petro-derived aromatic polyesters for packaging applications. The end of life of these materials was not studied yet, but it is expected that strategies of recycling can be successfully applied. In conclusion, the vanillin platform for polymer synthesis is now enriched of new copolymers with tunable properties.
DOI: 10.15454/f4c8i0
title: Consumer perception data about food packaging functionalities for fresh strawberries - Wood packaging consumers’ arguments
DOI: 10.15454/fhgcsx
title: Effect of Three Types of Exogenous Organic Carbon on Soil Organic Matter and Physical Properties of a Sandy Technosol

description: Technosols made by covering agricultural soils with coastal sediments need additional organic matter (OM) to be suitable for agricultural use. Climate change will likely increase the frequency and intensity of droughts in several areas. The choice of the nature and quantity of OM to add depends on dose-response curves for soil quality. This study quantifies the influence of three contrasting organic materials (vermicompost (VF), green waste compost (GWC) and dairy manure (DM)) on four soil properties: soil organic carbon, evaporation rate, bulk density and structural stability. Soil was sampled in April and May 2014 in an artificial crop field of the vegetable production basin of Mont Saint-Michel (France) made with sediments from the bay of Mont Saint-Michel in 2013. Increasing the dose of OM increased soil organic carbon from 10 to 45 g C kg−1 dry soil and increased the porosity and the structural stability, thus decreasing compaction. Increasing the dose of OM also decreased the evaporation rate. VF and DM had similar effects, while those of GWC were weaker. Compared to DM, VF had greater biological stability. Therefore, high OM inputs along with soil decompaction can increase drought resistance by increasing rooting depth and water retention.
DOI: 10.15454/fhrtwj
title: Feed efficiency of lactating Holstein cows is less reproducible when changing dietary starch and fibre concentrations than within diet over subsequent lactation stages

description: This platform gathers the variables, R scripts and SAS procedure mentionned and used in a paper entitled "Feed efficiency of lactating Holstein cows is less reproducible when changing dietary starch and fibre concentrations than within diet over subsequent lactation stages" available on BioRXiv. These data are based on data collected during the project ANR-15-CE20-0014 and are the ones got after outlier removal and calculation as specified in the paper. The files available are: - R script to create the dataset and do the analysis indicated in the paper (Rscript_datasetcreation_analysis.R ) - dataset to be downloaded at the beginning of the R script (data_origin.tab) - description of the previous dataset (description_variables_depositpaper.tab) - SAS procedure to estimate RFI (SASscript.txt ) - R script to analyse the NIRs spectra (Script_PCA_refusals.R ) - dataset with the NIRs spectra (data_nirs_refusals_v2.tab) - dataset with RFI estimation (RFI.tab )
DOI: 10.15454/eas2nz
title: RPG complété 2019 département 23

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 23. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/f40exp
title: Dataset on model cheeses composition, rheological and sensory properties, from six different projects exported from BaGaTel database.

description: This dataset corresponds to the raw data which will be used for a datapaper (in preparation for Data in Brief) and a publication (in preparation for International Dairy Journal). This dataset consists in a Microsoft excel Worksheet containing 4 sheets: 1) information on variables, 2) whole dataset, 3) missing data estimation, 4) dataset+estimated-data, 5) dataset_PCA-68samples, 6) correlation-matrices-68samples, 7) dataset_chewing-activity, 8) correlation-matrices_Chewing, 9) dataset_22samples-fatty, 10) correlation-matrix_22samples.
DOI: 10.15454/fffrl2
title: Supporting data for "Spot urine collection: A valid alternative to total urine collection for metabolomic studies in dairy cattle"

description: Supplementary information containing figures and tables for "Spot urine collection: A valid alternative to total urine collection for metabolomic studies in dairy cattle"
DOI: 10.15454/fginn1
title: RPG complété 2019 département 01

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 01. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/flfgld
title: RPG complété 2018 département 77

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 77. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/fycseu
title: RPG complété 2018 département 10

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 10. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/g3erwz
title: Données annuelles d'évaluation des taux de prédation de ravageurs au moyen de cartes de proies,dans les parcelles de grandes cultures du réseau SEBIOPAG de 2014 à 2019

description: Données issues du site d'étude des Vallées et Coteaux de Gascogne,portant sur des taux de prédation de 3 proies sentinelles-types collées sur des cartons pour évaluer l'influence relative des facteurs locaux (pratiques à la parcelle) et paysagers (structure dans un buffer de 1km²) sur la prédation de ravageurs dans des parcelles de grandes cultures. Les proies sont exposées au sol (graines d'adventices et pucerons) et dans le feuillage de la culture (oeufs de pyrale et pucerons). Il y a deux sessions dans la saison (à 1100°C/j et 1500°C/j).
DOI: 10.15454/gdldbh
title: Manipulable object and human contact: preferences and modulation of emotional states in weaned piglets

description: Data linked to the article "Manipulable object and human contact: preferences and modulation of emotional states in weaned piglets"
DOI: 10.15454/gisqyx
title: Genotyping dataset (medium-density SNPs) used to analyse the genetic diversity and population structure of four Senegalese sheep breeds

description: This dataset includes genotypes of 47 sheeps for 44,321 variants (SNPs). Animals belong to four sheep populations from Senegal. The compressed archive contains two files (in plink format): i) a genotyping data file named "sheep_44321variants_47individuals.ped" (47 rows, 88,448 columns) that contains, for each individual, six information columns (breed ID, animal ID and four columns with data coded 0 or U) and the genotypes (alleles 1 and 2) for the 44,321 SNPs (ACGT, Illumina TOP format) ; and ii) a map file named " sheep_44321variants_47individuals.map" (44,321 rows, 4 columns) that contains for each SNP, the autosome number, the SNP name, a column with data coded 0 and the SNP position on autosome (OAR3.1 assembly).
DOI: 10.15454/fdv7xm
title: RPG complété 2018 département 93

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 93. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020