cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/9870f1e978d5ef9e2dc70eefcae07bf4
title: Taxonomic Composition of Red Knot Fecal Samples on the Virginia Coast

description: Taxonomic Composition of Red Knot Fecal Samples on the Virginia Coast Understanding which prey birds use and how prey selection is related to prey availability is important to understanding avian ecology and for conservation planning. Abundant prey at stopovers during migration is a key to shorebird survival and breeding success. We determined which prey were available to foraging red knots (Calidris canutus rufa) using Virginia's barrier islands during spring migration by collecting substrate core samples containing prey on sand and peat substrates in May 2017 - 2019. We also collected red knot feces during the same period and used fecal DNA metabarcoding to determine which invertebrates red knots consumed. We used compositional analysis to determine which prey red knots selected on these islands. Crustaceans (Orders Amphipoda and Calanoida) were the most abundant prey on both sand and peat. Red knots consumed bivalves (Orders Venerida and Mytiloida), crustaceans (Orders Amphipoda and Calanoida), and insect larvae (Order Diptera). Red knots selected bivalves over non-bivalve prey, though non-bivalve prey may still be an important portion of the total caloric intake on Virginia's stopover, given their abundance and use. It is important that coastal conservation practices in the Western Mid-Atlantic stopover region continue to be designed to promote natural barrier island movement which leads to the formation of the peat banks used by many prey.
DOI: 10.5281/zenodo.5047418
title: Sample Raw (PPG, Accel, and Gyro) and Processed (steps, calories, sleep, HR, HRV, SPO2, Respiratory Rate, R-R) data over 24 hours

description: Over the course of 24 hours, we collected raw (Photoplethysmography (PPG), Acceleration, and Gyro) and processed (steps, calories, sleep, HR, HRV, SPO2, Respiratory Rate, R-R) data samples. Biostrap approaches health insights from a data-driven perspective. Our clinical-grade hardware enables users to accurately track SpO2, HRV, RHR, and a variety of other biometrics with confidence.
DOI: 10.5281/zenodo.5047417
title: Sample Raw (PPG, Accel, and Gyro) and Processed (steps, calories, sleep, HR, HRV, SPO2, Respiratory Rate, R-R) data over 24 hours

description: Over the course of 24 hours, we collected raw (Photoplethysmography (PPG), Acceleration, and Gyro) and processed (steps, calories, sleep, HR, HRV, SPO2, Respiratory Rate, R-R) data samples. Biostrap approaches health insights from a data-driven perspective. Our clinical-grade hardware enables users to accurately track SpO2, HRV, RHR, and a variety of other biometrics with confidence.
DOI: 10.25345/c5z833
title: MassIVE MSV000087723 - GC/MS analysis of various compounds for library search 4
title: GC/MS analysis of various compounds for library search
DOI: 10.6084/m9.figshare.14522775
title: UpdatedDeltaP1.xlsx

description: The Excel file UpdatedDeltaP1.xlsx consists of 6 spreadsheets, namely: hist_2017_2000.xlsx hist_2017_2500.xlsx hist_2017_3000.xlsx hist_2019_2000.xlsx hist_2019_2500.xlsx hist_2019_3000.xlsxEach spreadheet provides along colum wise differential pressure values for the elements of the CM2 faults as per local model discretisation from 1/1/1991 to 1/1/2026. These values are referred to the initial equilibration pressure values at time 1/1/1991. The name of the spread-sheet labels the specific simulation: "hist_2017" means the history data runs till the history period in the paper, while "hist_2019" means the history data for the CM2 injection rates are used until the end of the validation period. The remaining part of the the spreadsheet name indicates the injection rate used in the forecast, 2000, 2500 and 3000 sm3/day.
DOI: 10.6084/m9.figshare.14522775.v1
title: UpdatedDeltaP1.xlsx

description: The Excel file UpdatedDeltaP1.xlsx consists of 6 spreadsheets, namely: hist_2017_2000.xlsx hist_2017_2500.xlsx hist_2017_3000.xlsx hist_2019_2000.xlsx hist_2019_2500.xlsx hist_2019_3000.xlsxEach spreadheet provides along colum wise differential pressure values for the elements of the CM2 faults as per local model discretisation from 1/1/1991 to 1/1/2026. These values are referred to the initial equilibration pressure values at time 1/1/1991. The name of the spread-sheet labels the specific simulation: "hist_2017" means the history data runs till the history period in the paper, while "hist_2019" means the history data for the CM2 injection rates are used until the end of the validation period. The remaining part of the the spreadsheet name indicates the injection rate used in the forecast, 2000, 2500 and 3000 sm3/day.
DOI: 10.25387/g3.14815920.v1
title: Supplemental Material for Zaworski et al., 2021

description: Table S1 "Pedigree LB5000 STK005" traces the descent of LB5000 and some relatives through the literature since 1959; with wild ancestor, donor strain, recipient strain, renaming, construction reference and mode of construction. File S1 "STK005 variants" contains 5 Excel spreadsheets documenting positions at which STK005 sequence differs from the genome sequences representing two ancestral components. For three genome segments derived from LT2, variant nucleotide positions of LT2 (NC_003197.2) are listed, with consequences for amino acid changes; for two short segments derived <i>Salmonella enterica </i>serovar Abony SW803 (H1, 15.4 kb and H2, 41.7 kb), all annotated loci are listed as well, since few positions vary from the Abony reference. The reference segments H1 and H2 were extracted from <i>Salmonella enterica subsp. enterica</i> serovar Abony str. 0014 - NZ_CP007534.1: for transduction 1 of Table S1, H1--nt 3956473-3942278 (reversed); for transduction 2, H2--nt 4713943-4725447(catenated)1-18493 (the segment crosses the numerical origin, so is catenated). File S2 "Analysis of 11 kb high-similarity region in the Gifsy prophages" describes and displays alignments (referred to as "Embedded figs") that resolve allele configurations in Gifsy prophages. File S3 "STK005 genotype inferences from sequence" describes the recorded genotype; explains assignment of flagellar genotype; accounts for IS element annotations in LT2 and STK005; describes the protocol used to generate the variant list found in File S1; lists protein changes that account for the genotype; and points out some additional possible changes. File S4 "PCR survey for 42bp insertion in isolates of <i>S. enterica </i>sv Typhimurium str LT2" demonstrates the insertion is present in Gifsy-1 and conserved in most LT2 strains.
DOI: 10.25387/g3.14815920
title: Supplemental Material for Zaworski et al., 2021

description: Table S1 "Pedigree LB5000 STK005" traces the descent of LB5000 and some relatives through the literature since 1959; with wild ancestor, donor strain, recipient strain, renaming, construction reference and mode of construction. File S1 "STK005 variants" contains 5 Excel spreadsheets documenting positions at which STK005 sequence differs from the genome sequences representing two ancestral components. For three genome segments derived from LT2, variant nucleotide positions of LT2 (NC_003197.2) are listed, with consequences for amino acid changes; for two short segments derived <i>Salmonella enterica </i>serovar Abony SW803 (H1, 15.4 kb and H2, 41.7 kb), all annotated loci are listed as well, since few positions vary from the Abony reference. The reference segments H1 and H2 were extracted from <i>Salmonella enterica subsp. enterica</i> serovar Abony str. 0014 - NZ_CP007534.1: for transduction 1 of Table S1, H1--nt 3956473-3942278 (reversed); for transduction 2, H2--nt 4713943-4725447(catenated)1-18493 (the segment crosses the numerical origin, so is catenated). File S2 "Analysis of 11 kb high-similarity region in the Gifsy prophages" describes and displays alignments (referred to as "Embedded figs") that resolve allele configurations in Gifsy prophages. File S3 "STK005 genotype inferences from sequence" describes the recorded genotype; explains assignment of flagellar genotype; accounts for IS element annotations in LT2 and STK005; describes the protocol used to generate the variant list found in File S1; lists protein changes that account for the genotype; and points out some additional possible changes. File S4 "PCR survey for 42bp insertion in isolates of <i>S. enterica </i>sv Typhimurium str LT2" demonstrates the insertion is present in Gifsy-1 and conserved in most LT2 strains.
DOI: 10.5066/p9uloso9
title: GRID Raster Dataset Model and TIN Model of Overburden Above the LaClede Bed in the Green River and Washakie Basins, southwestern Wyoming

description: An ESRI GRID raster data model and TIN model of the overburden material above the LaClede bed of the Laney Member of the Eocene Green River Formation was needed to perform calculations in the Green River and Washakie Basins, southwestern Wyoming as part of a National Oil Shale Assessment.
DOI: 10.6084/m9.figshare.14885977
title: Records of adulticide in mammals;Mammalian features from Killing conspecific adults in mammals

description: Dataset including all cases where adulticide has been observed in mammals;Dataset including the value of the seven mammalian features included in the analyses
DOI: 10.6084/m9.figshare.14524068
title: Compressed file of the local model mesh

description: The local mesh is available in the file _LocalMeshModel.vtk using the ascii vtk format (see https://vtk.org/wp-content/uploads/2015/04/file-formats.pdf). The mesh is a finite elemen tetrahedron based grid and it is reported following the UNSTRUCTURED_GRID format:* Points coordinates, one point per line; * Cell Types (cell type is 10 for tetrahedrons according to the documentation)* Cell number and size (that is to say the total number of vertices) followed by the list of the ids of the points for each vertex on a cell by cell basis.<br>
DOI: 10.6084/m9.figshare.14524068.v1
title: Compressed file of the local model mesh

description: The local mesh is available in the file _LocalMeshModel.vtk using the ascii vtk format (see https://vtk.org/wp-content/uploads/2015/04/file-formats.pdf). The mesh is a finite elemen tetrahedron based grid and it is reported following the UNSTRUCTURED_GRID format:* Points coordinates, one point per line; * Cell Types (cell type is 10 for tetrahedrons according to the documentation)* Cell number and size (that is to say the total number of vertices) followed by the list of the ids of the points for each vertex on a cell by cell basis.<br>
DOI: 10.25345/c5tk0t
title: MassIVE MSV000087724 - GC/MS analysis of various compounds for library search 5
title: GC/MS analysis of various compounds for library search 5 RIGHT_SSL_EI_sleep_10_min_60_15dg_min_330_as_Center_2mkl_spli45_55min
DOI: 10.6084/m9.figshare.14887410
title: Supplementary Data Tables.xlsx from DDX21 is a p38-MAPK sensitive nucleolar protein necessary for mouse preimplantation embryo development and cell-fate specification

description: Successful navigation of the mouse preimplantation stages of development, during which three distinct blastocyst lineages are derived, represents a prerequisite for continued development. We previously identified a role for p38-mitogen-activated kinases (p38-MAPK) regulating blastocyst inner cell mass (ICM) cell fate, specifically primitive endoderm (PrE) differentiation, that is intimately linked to rRNA precursor processing, polysome formation and protein translation regulation. Here, we develop this work by assaying the role of DEAD-box RNA helicase 21 (DDX21), a known regulator of rRNA processing, in the context of p38-MAPK regulation of preimplantation mouse embryo development. We show nuclear DDX21 protein is robustly expressed from the 16-cell stage, becoming exclusively nucleolar during blastocyst maturation; a localization dependent on active p38-MAPK. siRNA-mediated clonal <i>Ddx21</i> knockdown within developing embryos is associated with profound cell-autonomous and non-autonomous proliferation defects and reduced blastocyst volume, by the equivalent peri-implantation blastocyst stage. Moreover, ICM residing <i>Ddx21</i> knockdown clones express the EPI marker NANOG but rarely express the PrE differentiation marker GATA4. These data contribute further significance to the emerging importance of lineage-specific translation regulation, as identified for p38-MAPK, during mouse preimplantation development.
DOI: 10.6084/m9.figshare.14887410.v1
title: Supplementary Data Tables.xlsx from DDX21 is a p38-MAPK sensitive nucleolar protein necessary for mouse preimplantation embryo development and cell-fate specification

description: Successful navigation of the mouse preimplantation stages of development, during which three distinct blastocyst lineages are derived, represents a prerequisite for continued development. We previously identified a role for p38-mitogen-activated kinases (p38-MAPK) regulating blastocyst inner cell mass (ICM) cell fate, specifically primitive endoderm (PrE) differentiation, that is intimately linked to rRNA precursor processing, polysome formation and protein translation regulation. Here, we develop this work by assaying the role of DEAD-box RNA helicase 21 (DDX21), a known regulator of rRNA processing, in the context of p38-MAPK regulation of preimplantation mouse embryo development. We show nuclear DDX21 protein is robustly expressed from the 16-cell stage, becoming exclusively nucleolar during blastocyst maturation; a localization dependent on active p38-MAPK. siRNA-mediated clonal <i>Ddx21</i> knockdown within developing embryos is associated with profound cell-autonomous and non-autonomous proliferation defects and reduced blastocyst volume, by the equivalent peri-implantation blastocyst stage. Moreover, ICM residing <i>Ddx21</i> knockdown clones express the EPI marker NANOG but rarely express the PrE differentiation marker GATA4. These data contribute further significance to the emerging importance of lineage-specific translation regulation, as identified for p38-MAPK, during mouse preimplantation development.
DOI: 10.5281/zenodo.4695235
title: A New Model of Interpretation and Communication for Ensemble Music-Making - Appendices

description: Appendices for Music Ph.D
DOI: 10.5281/zenodo.4695234
title: A New Model of Interpretation and Communication for Ensemble Music-Making - Appendices

description: Appendices for Music Ph.D
DOI: 10.7284/142345
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AR52-B using a Hawaii UHDAS instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142352
title: Multiplexed data collected during research cruise AR52-B using a WHOI dsLog gyro instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142356
title: Flowmeter data collected during research cruise AR52-B using a Thiel Thiel Flowmeter instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142339
title: Fluorometer data collected during research cruise AR52-B using a WET Labs WETStar instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142342
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR52-B using a C&C C-Nav 3050 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.15468/38yjtd
title: Pseudotoothed Birds (Aves, Odontopterygiformes) from the Early Tertiary of Morocco

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bourdon, Estelle, Amaghzaz, Mbarek, Bouya, Baâdi (2010): Pseudotoothed Birds (Aves, Odontopterygiformes) from the Early Tertiary of Morocco. American Museum Novitates 2010 (3704): 1-72, DOI: 10.1206/3704.2, URL: http://www.bioone.org/doi/abs/10.1206/3704.2
DOI: 10.7284/142355
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR52-B using a Kongsberg DPS112 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142346
title: Gravimeter data collected during research cruise AR52-B using a Bell BGM-3 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142354
title: INS (Inertial Navigation System) data collected during research cruise AR52-B using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142348
title: Meteorological Station data collected during research cruise AR52-B using a Vaisala WXT520 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142349
title: Meteorological Station data collected during research cruise AR52-B using a Vaisala WXT520 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142351
title: Multibeam Echosounder data collected during research cruise AR52-B using a Kongsberg EM710 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142476
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise AR52-B using a General Oceanics 8050 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142343
title: Radiometer data collected during research cruise AR52-B using a Eppley RAD instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142344
title: Radiometer data collected during research cruise AR52-B using a Biospherical QSR-2150 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142357
title: Speedlog data collected during research cruise AR52-B using a Furuno DS-60 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142353
title: Splitbeam Echosounder data collected during research cruise AR52-B using a Kongsberg EK80 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142358
title: SSV (Sound Speed Velocimeter) data collected during research cruise AR52-B using a Valeport Thru-Hull SVS instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142350
title: Water Temperature data collected during research cruise AR52-B using a Sea-Bird SBE-48 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142359
title: Transmissometer data collected during research cruise AR52-B using a Sea-Bird C-Star instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142340
title: TSG (Thermosalinograph) data collected during research cruise AR52-B using a Sea-Bird SBE-45 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.5046293
title: ARIVVD: Aberystwyth Robot Infant Vision Video Dataset

description: This is the Aberystwyth Robot Infant Vision Video Dataset, created for developmental robotics research at Aberystwyth University. This dataset was created for an internally funded research pilot project (“Babyvision: a robotic investigation into early development of colour constancy”).
DOI: 10.5281/zenodo.5046292
title: ARIVVD: Aberystwyth Robot Infant Vision Video Dataset

description: This is the Aberystwyth Robot Infant Vision Video Dataset, created for developmental robotics research at Aberystwyth University. This dataset was created for an internally funded research pilot project (“Babyvision: a robotic investigation into early development of colour constancy”).
DOI: 10.25345/c5pr8b
title: MassIVE MSV000087725 - GC/MS analysis of various compounds for library search 6
title: GC/MS analysis of various compounds for library search RIGHT_SSL_EI_sleep_2_0_min_60_15dg_min_as_1mkl_cent_split25_mass_10-550
DOI: 10.25345/c5k240
title: MassIVE MSV000087726 - GC/MS analysis of various compounds for library search 7
title: GC/MS analysis of various compounds for library search RIGHT_SSL_EI_sleep_2_2_10dg_min_35-250_as_1_split50
DOI: 10.25345/c5f83f
title: MassIVE MSV000087727 - GC/MS analysis of various compounds for library search 8
title: GC/MS analysis of various compounds for library search RIGHT_SSL_EI_sleep_2_5min_60_15dg_min
DOI: 10.6073/pasta/a5bab2b61a3319401d030c20290959ed
title: Role of Moose and Deer Browsing in Unharvested Forests of Southern New England since 2011

description: In the past 25 years, moose have spread south from Vermont and New Hampshire and recolonized their pre-historical range limit in southern New England from which they had been extirpated almost 200 years earlier. Intensive moose browsing in the boreal forest has caused declines in forest density and shifts in species composition in some areas, generating considerable interest and concern among foresters, wildlife managers, and ecologists as to how moose along with white-tailed deer will impact forest regeneration, composition, and diversity in this region. Harvard Forest in collaboration with researchers at the USGS Massachusetts Cooperative Research Unit has initiated a long-term study of the role of moose and deer in SNE forests using experimental exclosures. The design is a randomized block with 3 factors -- full exclosure, partial exclosure, and control plot. Full exclosures exclude both moose and deer but allow access to small mammals such as mice, squirrels, and rabbits. Partial exclosures have a 60cm opening around the bottom perimeter of the fence, which excludes moose but allows access to deer and other small and medium-sized animals. The design enables us to quantify forest composition and structure in areas (1) exposed to moose and deer browsing, (2) protected from moose and deer browsing, and (3) exposed to deer browsing but protected from moose browsing.
DOI: 10.5281/zenodo.5047528
title: Replication package for: Measuring the Incentive to Collude: The Vitamin Cartels, 1990–1999 (version 2)

description: This replication package contains the data and the code to generate the results reported in "Measuring the Incentive to Collude: The Vitamin Cartels, 1990–1999" by Mitsuru Igami and Takuo Sugaya, to be published in The Review of Economic Studies.
DOI: 10.15468/pagyku
title: A New Genus of the Spider Family Caponiidae (Araneae, Haplogynae) from the West Indies

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sánchez-Ruiz, Alexander, Platnick, Norman I., Dupérré, Nadine (2010): A New Genus of the Spider Family Caponiidae (Araneae, Haplogynae) from the West Indies. American Museum Novitates 2010 (3705): 1-44, DOI: 10.1206/3705.2, URL: http://www.bioone.org/doi/abs/10.1206/3705.2