cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19306826
title: Supplementary Material for: Beschreibung und Evaluation eines Manuals für Herzratenvariabilitäts-Biofeedback bei der somatischen Belastungsstörung

description: <b><i>Hintergrund:</i></b> Herzratenvariabilitäts-Biofeedback (HRV-BF) zeigt erste Wirksamkeitshinweise bei Depressionen, Angststörungen oder funktionellen somatischen Syndromen. Bei der somatischen Belastungsstörung (SBS) stehen diese noch aus. Ziel der vorliegenden Arbeit war es, eine neu entwi­ckelte HRV-BF-Kurzintervention vorzustellen und die HRV detailliert zu analysieren sowie die Anwendbarkeit und Ak­zeptanz bei der SBS zu überprüfen. <b><i>Methoden:</i></b> Analysiert wurden hier die Daten der Teilstichprobe einer randomisiert kontrollierten Pilotstudie (22 Personen mit SBS nach DSM-5), die ein HRV-BF über 4 Sitzungen erhielt. Erhoben wurden die HRV (SDNN: “standard deviation of the NN interval”, RMSSD: “root mean square of successive differences between NN interval”, LF: “low frequency”), die Bewertung und Akzeptanz der Intervention auf subjektiver Ebene. <b><i>Ergebnisse:</i></b> HRV-Analysen innerhalb der Therapiesitzungen zeigten, dass die Personen lernten, ihre HRV signifikant während der Biofeedbackeinheiten zu erhöhen und diese in Selbstregulationsphasen ohne Feedback aufrechtzuerhalten (SDNN, RMSSD, LF: 5,7 ≤ <i>F</i><sub><i>t</i></sub> ≤ 11,1). Zudem zeigte sich eine Verbesserung der HRV über die Sitzungen hinweg (SDNN). Die Intervention wurde durch die Mehrheit der Teilnehmer*innen sehr positiv bewertet (u.a. Zufriedenheit, Verbesserung der Stimmung und des körperlichen Befindens). <b><i>Schlussfolgerungen:</i></b> HRV-BF kann in 4 Sitzungen gut erlernt werden und zeigt positive Effekte bei Patient*innen mit SBS. Die Hinzunahme des HRV-BF zu bestehenden Interventionen, z.B. Psychotherapie, scheint vielversprechend.
DOI: 10.48370/ofd/s3ninu
title: Hysterium pulicare Persoon, 338

description: Fungarium Macromycetes
DOI: 10.48370/ofd/w6unyg
title: Hysterium pulicare Persoon, 1062

description: Fungarium Macromycetes
DOI: 10.48370/ofd/evgz4x
title: Hysterium pulicare Persoon, 2993

description: Fungarium Macromycetes
DOI: 10.6084/m9.figshare.16531192.v3
title: The Student-Generated Reasoning Tool (SGRT): Linking medical knowledge and clinical reasoning in preclinical education

description: The simultaneous integration of knowledge acquisition and development of clinical reasoning in preclinical medical education remains a challenge. To help address this challenge, the authors developed and implemented the Student-Generated Reasoning Tool (SGRT)—a tool asking students to propose and justify pathophysiological hypotheses, generate findings, and critically appraise information. In 2019, students in a first-year preclinical course (<i>n</i> = 171; SGRT group) were assigned to one of 20 teams. Students used the SGRT individually, then in teams, and faculty provided feedback. The control group (<i>n</i> = 168) consisted of students from 2018 who did not use SGRT. Outcomes included academic performance, effectiveness of collaborative environments using the SGRT, and student feedback. Students were five times more likely to get questions correct if they were in the SGRT group versus control group. Accuracy of pathophysiological hypotheses was significantly lower for individuals than teams. Qualitative analysis indicated students benefited from generating their own data, justifying their reasoning, and working individually as well as in teams. This study introduces the SGRT as a potentially engaging, case-based, and collaborative learning method that may help preclinical medical students become aware of their knowledge gaps and integrate their knowledge in basic and clinical sciences in the context of clinical reasoning.
DOI: 10.6084/m9.figshare.16531192
title: The Student-Generated Reasoning Tool (SGRT): Linking medical knowledge and clinical reasoning in preclinical education

description: The simultaneous integration of knowledge acquisition and development of clinical reasoning in preclinical medical education remains a challenge. To help address this challenge, the authors developed and implemented the Student-Generated Reasoning Tool (SGRT)—a tool asking students to propose and justify pathophysiological hypotheses, generate findings, and critically appraise information. In 2019, students in a first-year preclinical course (<i>n</i> = 171; SGRT group) were assigned to one of 20 teams. Students used the SGRT individually, then in teams, and faculty provided feedback. The control group (<i>n</i> = 168) consisted of students from 2018 who did not use SGRT. Outcomes included academic performance, effectiveness of collaborative environments using the SGRT, and student feedback. Students were five times more likely to get questions correct if they were in the SGRT group versus control group. Accuracy of pathophysiological hypotheses was significantly lower for individuals than teams. Qualitative analysis indicated students benefited from generating their own data, justifying their reasoning, and working individually as well as in teams. This study introduces the SGRT as a potentially engaging, case-based, and collaborative learning method that may help preclinical medical students become aware of their knowledge gaps and integrate their knowledge in basic and clinical sciences in the context of clinical reasoning.
DOI: 10.6084/m9.figshare.16531192.v2
title: The Student-Generated Reasoning Tool (SGRT): Linking medical knowledge and clinical reasoning in preclinical education

description: The simultaneous integration of knowledge acquisition and development of clinical reasoning in preclinical medical education remains a challenge. To help address this challenge, the authors developed and implemented the Student-Generated Reasoning Tool (SGRT)—a tool asking students to propose and justify pathophysiological hypotheses, generate findings, and critically appraise information. In 2019, students in a first-year preclinical course (<i>n</i> = 171; SGRT group) were assigned to one of 20 teams. Students used the SGRT individually, then in teams, and faculty provided feedback. The control group (<i>n</i> = 168) consisted of students from 2018 who did not use SGRT. Outcomes included academic performance, effectiveness of collaborative environments using the SGRT, and student feedback. Students were five times more likely to get questions correct if they were in the SGRT group versus control group. Accuracy of pathophysiological hypotheses was significantly lower for individuals than teams. Qualitative analysis indicated students benefited from generating their own data, justifying their reasoning, and working individually as well as in teams. This study introduces the SGRT as a potentially engaging, case-based, and collaborative learning method that may help preclinical medical students become aware of their knowledge gaps and integrate their knowledge in basic and clinical sciences in the context of clinical reasoning.
DOI: 10.6084/m9.figshare.19189307
title: SCALLOP ACE2 GWAS Summary Statistics

description: This dataset contains the full genome-wide association meta analysis summary statistics of the SCALLOP Consortium plasma ACE2 GWAS (Yang et al. 2022, Circulation).
DOI: 10.5281/zenodo.6326857
title: SUrface Ruptures due to Earthquakes (SURE) database - version 1.0

description: The files correspond to the rupture traces, slip measurement points and earthquake information of the Surface rupture database published in the paper "A Worldwide and Unified Database of Surface Ruptures (SURE) for Fault Displacement Hazard Analyses" by Stéphane Baize, Fiia Nurminen, Alexandra Sarmiento, Timothy Dawson, Makoto Takao, Oona Scotti, Takashi Azuma, Paolo Boncio, Johann Champenois, Francesca R. Cinti, Riccardo Civico, Carlos Costa, Luca Guerrieri, Etienne Marti, James McCalpin, Koji Okumura, and Pilar Villamor in Seismological Research Letters (doi: 10.1785/0220190144).
DOI: 10.5281/zenodo.6326856
title: SUrface Ruptures due to Earthquakes (SURE) database - version 1.0

description: The files correspond to the rupture traces, slip measurement points and earthquake information of the Surface rupture database published in the paper "A Worldwide and Unified Database of Surface Ruptures (SURE) for Fault Displacement Hazard Analyses" by Stéphane Baize, Fiia Nurminen, Alexandra Sarmiento, Timothy Dawson, Makoto Takao, Oona Scotti, Takashi Azuma, Paolo Boncio, Johann Champenois, Francesca R. Cinti, Riccardo Civico, Carlos Costa, Luca Guerrieri, Etienne Marti, James McCalpin, Koji Okumura, and Pilar Villamor in Seismological Research Letters (doi: 10.1785/0220190144).
DOI: 10.48370/ofd/relk27
title: Hysterobrevium smilacis (Schwein.) E.Boehm C.L.Schoch, 328

description: Fungarium Macromycetes
DOI: 10.48370/ofd/ct4pho
title: Illosporiopsis christiansenii (B.L.Brandy D.Hawksw.) D.Hawksw., 203

description: Fungarium Macromycetes
DOI: 10.5281/zenodo.6326869
title: PROTEIN 2.0 survey data

description: The dataset has been collected in the project Protein 2.0. The project explores consumer perception of synthetic / cultured protein products like meat, fish, or dairy. We thank Rashid Maqbool for his contribution to the development of the survey, Fie Følbæk Gravgaard for the translation of the Danish version, Knut Weberg for the translation of the Norwegian version of the survey, and Hanna L. Tuomisto for commenting the translation of the Finnish version of the survey. We also wish to acknowledge the research team from Protein 2.0 for extensive discussions on and input to the first draft of the survey.
description: The study was financed with funding from the Norwegian Research Council (Grant No 294777), EIT-FOOD (FUTUREPROTEIN ID-20186), the Kone Foundation (Grant No 201802185), and the Foundation for Economic Education (Grant No 190340).
DOI: 10.5281/zenodo.6326868
title: PROTEIN 2.0 survey data

description: The dataset has been collected in the project Protein 2.0. The project explores consumer perception of synthetic / cultured protein products like meat, fish, or dairy. We thank Rashid Maqbool for his contribution to the development of the survey, Fie Følbæk Gravgaard for the translation of the Danish version, Knut Weberg for the translation of the Norwegian version of the survey, and Hanna L. Tuomisto for commenting the translation of the Finnish version of the survey. We also wish to acknowledge the research team from Protein 2.0 for extensive discussions on and input to the first draft of the survey.
description: The study was financed with funding from the Norwegian Research Council (Grant No 294777), EIT-FOOD (FUTUREPROTEIN ID-20186), the Kone Foundation (Grant No 201802185), and the Foundation for Economic Education (Grant No 190340).
DOI: 10.6084/m9.figshare.19232793
title: Data for Stiller et al. Phylogenomic analysis of Syngnathidae reveals novel relationships, origins of endemic diversity and variable diversification rates

description: Data accompanying "Phylogenomic analysis of Syngnathidae reveals novel relationships, origins of endemic diversity and variable diversification rates" in BMC Biology.<br>This repository contains data and scripts accompanying the manuscript "Phylogenomic analysis of Syngnathidae reveals novel relationships, origins of endemic diversity and variable diversification rates" in BMC Biology<br><br>For questions, please contact josefin.stiller@bio.ku.dk.<br>The following files or gtar compressed collections of files are available:<b><br></b><b>Additional_file_2.tsv</b>Table of sampling data for all included specimens.<br><b>assembly.conf</b> Contains the configuration file used by PHYLUCE to build assemblies.<br><b>1_assemblies.gtar</b> Contains the assemblies for all samples generated by SPADES (directory spades-assemblies/contigs/) and ABYSS (directory abyss-assemblies/) and the chosen best assemblies (directory best/contigs/).<br><b>2_238taxa_concatenation.gtar</b> Contains the concatenated matrices for the 238 taxa dataset and IQTREE log files and intermediate files and the tree file.<br><b>3_238taxa_gene_trees_ASTRAL.gtar</b> Contains the alignments, IQTREE log files gene trees intermediate files and the tree files for the individual gene trees for the 238 taxa dataset. Also contains input and output files from ASTRAL-III analysis.<br><b>4_361taxa_concatenation.gtar</b> Contains the concatenated matrices for the 361 taxa dataset and IQTREE log files and intermediate files and the tree file.<br><b>5_361taxa_gene_trees_ASTRAL.gtar</b> Contains the alignments, IQTREE log files gene trees intermediate files and the tree files for the individual gene trees for the 361 taxa dataset. Also contains input and output files from ASTRAL-III analysis.<br><b>6_beast_analyses.gtar</b> Contains BEAST2 run files for the calibration analyses inclduing xml infiles, log and trees files from the runs.<br><b>7_barcodes_blast.gtar</b><br>Contains COI barcodes from BOLD used to blastn against the assemblies (directory best/contigs/ of 1_assemblies.gtar) to assist in species identification and delimitation. Output files are given in directory blast_hits/ as tab delimited text files, which are in blast's output format 6. Not all samples are represented because not all resulted in blast hits against the COI barcodes.<br><b>8_phylogenetic_diversity_endemism.gtar</b>Contains the presence absence matrix and the tables of calculated phylogenetic diversity and phylogenetic endemism.<br><b>9_BioGeoBEARS_biogeographic_reconstructions.gtar</b>Input files, R scripts, output files and plots for ancestral biogeographic range reconstruction and Bayesian Stochastic Mapping (BSM) of Syngnathiformes.<br><b>10_Diversification_rates.gtar</b>Input files, commands, output files for diversification rate analyses of - ClaDS run in Julia- Episodic Birth Death model run in RevBayes.<br><br>
DOI: 10.34740/kaggle/dsv/3253788
title: AutoXGB
DOI: 10.6084/m9.figshare.18551078
title: Spreadsheet data for LIMS Paper 2022

description: results of survey and ESS pre & post COVID delay to treatment
DOI: 10.6084/m9.figshare.19095617
title: Supplementary Material for: Influences of vitamin D levels and vitamin D binding protein polymorphisms on non-alcoholic fatty liver disease risk in a Chinese population

description: Introduction: Vitamin D binding protein (VDBP) is correlated with non-alcoholic fatty liver disease (NAFLD) through the biological functions of regulating plasma vitamin D (VD) level and the inflammatory process. Objective: This study aims to investigate the effects of VD level and VDBP gene polymorphisms on the risk of NAFLD in a Chinese population. Methods: Plasma 25-hydroxyvitamin D3 [25(OH)D3] levels were measured and seven VDBP candidate genetic variants (rs222020, rs2282679, rs4588, rs1155563, rs7041, rs16847024, rs3733359) were genotyped among participants in this case-control study. The control group was frequency-matched to NAFLD case group by age and gender. Correlation analysis and multiple linear regression were used to screen determinants of 25(OH)D3 levels. Multivariable unconditional logistic regression was performed to estimate odds ratio (OR) and 95% confidence interval (95% CI). The prediction capability of models containing independent factors was estimated by the area under the receiver operating characteristic curve (AUROC) and Hosmer-Lemeshow test. Results: Age, BMI and TG were independent factors influencing VD levels. Participants with low VD levels had significantly higher prevalence of NAFLD compared to subjects with normal VD levels (P &lt; 0.001). A low VD level contributed to increased risk of NAFLD, independent of metabolic factors known to affect VD levels (adjusted OR = 2.282, 95% CI = 1.422-3.661, P = 0.001). Logistic regression analysis showed that individuals carrying rs7041-G allele had a significantly decreased risk of NAFLD occurrence compared to T allele (additive model: adjusted OR = 0.814, 95% CI = 0.713-0.929, P = 0.002; codominant model: adjusted OR = 0.623, 95% CI = 0.449-0.866, P = 0.005), after adjusting for age, gender, and overweight. Stratification by multiple metabolic disorders did not alter this relationship. Moreover, we developed a simple model including age, gender, metabolic disorders and VDBP SNP to assess NAFLD risk, an AUC of which being 0.817, significantly higher than the model not included VDBP SNP, with Hosmer-Lemeshow test fitting well (P = 0.182). Conclusions: Low plasma VD levels may increase susceptibility to NAFLD, while rs7041-G allele in VDBP contributed to a decreased NAFLD risk among Chinese population. The VDBP variant significantly improved the capability for NAFLD risk assessment, which could be used for early screening and management of NAFLD.
DOI: 10.48370/ofd/p6djh5
title: Kneiffiella subalutacea (P.Karst.) Jülich Stalpers, 3099

description: Fungarium Macromycetes
DOI: 10.48323/sdsef-hr427
title: MS_offline_ICS6000_2019_August

description: offline ICS-6000 data - raw data of metabolite measurements
DOI: 10.48370/ofd/xxuuxj
title: Kretzschmaria deusta (Hoffmann) Martin, 1840

description: Fungarium Macromycetes
DOI: 10.25835/9rc8zkbg
title: Instance Data for Designing Dynamic Inductive Charging Infrastructures for Airport Aprons with Multiple Vehicle Types

description: Instance Data for Designing Dynamic Inductive Charging Infrastructures for Airport Aprons with Multiple Vehicle Types
DOI: 10.48370/ofd/iw2lqp
title: Kretzschmaria deusta (Hoffmann) Martin, 2014

description: Fungarium Macromycetes
DOI: 10.5281/zenodo.6325132
title: Dataset for Aqueous habitats and carbon inputs shape the microscale geography and interaction ranges of soil bacteria

description: This repository hosts data for the paper entitled: "<em>Aqueous habitats and carbon inputs shape the microscale geography and interaction ranges of soil bacteria</em>" by Samuel Bickel and Dani Or. The following files are provided: <strong>Microcosm experiment:</strong> - Fluorescence microscopy images of the microcosm experiment (*.tif) - Code used for extracting cell locations from images (image_analysis.py) <strong>Global model estimates from the bacterial interactions heuristic model:</strong> - Maps of estimated cell density and proportion of biomass associated with anoxic cell clusters (*.nc)
DOI: 10.5281/zenodo.6325131
title: Dataset for Aqueous habitats and carbon inputs shape the microscale geography and interaction ranges of soil bacteria

description: This repository hosts data for the paper entitled: "<em>Aqueous habitats and carbon inputs shape the microscale geography and interaction ranges of soil bacteria</em>" by Samuel Bickel and Dani Or. The following files are provided: <strong>Microcosm experiment:</strong> - Fluorescence microscopy images of the microcosm experiment (*.tif) - Code used for extracting cell locations from images (image_analysis.py) <strong>Global model estimates from the bacterial interactions heuristic model:</strong> - Maps of estimated cell density and proportion of biomass associated with anoxic cell clusters (*.nc)
DOI: 10.48370/ofd/0zddwa
title: Kretzschmaria deusta (Hoffmann) Martin, 3709

description: Fungarium Macromycetes
DOI: 10.48370/ofd/ibknkd
title: Laccaria amethystea (Bull.) Murrill, 1184

description: Fungarium Macromycetes
DOI: 10.6084/m9.figshare.19306892
title: Experimental evolution of high aerobic metabolism results in improved male reproductive success in field conditions.

description: This file includes the data reported in the paper: <br> "Experimental evolution of high aerobic metabolism results in improved male reproductive success in field conditions."<br> Anni M. Hämäläinen 1,2,*,†, Tanja Hirvonen 2,†, Phillip C. Watts 2 , Tapio Mappes 2, Pawel Koteja 1, Esa Koskela 2 Affiliations: 1. Institute of Environmental Sciences, Jagiellonian University, Cracow, Poland 2. Department of Biological and Environmental Science, University of Jyväskylä, Finland * Corresponding author: ORCID: 0000-0001-9260-8299, anni.m.hamalainen@gmail.com † Shared first author
DOI: 10.48370/ofd/mq30r9
title: Laccaria amethystea (Bull.) Murrill, 1790

description: Fungarium Macromycetes
DOI: 10.6084/m9.figshare.19306946
title: Zehra Betul Turel_PhD Thesis Datasets for each empirical chapter

description: Planarians' Conditioned Place Preference scores were recorded. In this dataset, time spent in their less preferred side of the petri dish is presented over the experimental sessions.
DOI: 10.6084/m9.figshare.16862489.v1
title: IDPlanT: the Italian database of plant translocation

description: IDPlanT is the Italian Database of Plant Translocation, an initiative of the Nature Conservation Working Group of the Italian Botanical Society. IDPlanT currently includes 185 plant translocations. The establishment of a national database on plant translocation is a key step forward in data sharing and techniques improvement in this field of plant conservation. Supplemental data for this article is available online at https://doi.org/10.1080/11263504.2021.1985004 .
DOI: 10.6084/m9.figshare.13333573
title: <i>In vitro</i> evaluation of cytotoxic, oxidative, genotoxic, and apoptotic activities of physodic acid from <i>Pseudevernia furfuracea</i> in HepG2 and THLE2 cells

description: In the present study, cytotoxic (apoptotic and necrotic), antioxidant, prooxidant, genotoxic, and apoptosis-related genes expression modulatory effects of physodic acid (PA) isolated from <i>Pseudevernia furfuracea</i> on cancerous (HepG2) and healthy (THLE2) human liver cells were evaluated. Cytotoxic effects PA obtained from <i>P. furfuracea</i> on HepG2 and THLE2 cells were tested via MTT and LDH analyses. In order to determine genotoxic effect of PA, 8-OH-dG levels in the cells were measured. In addition, apoptotic or necrotic effects of PA on the hepatic cells were determined by qRT-PCR analysis. Cytotoxicity analyses revealed the cytotoxic effect of PA on HepG2 cells, which is much higher than THLE2 cells. Gene expression studies demonstrated the apoptotic effects of PA on HepG2 cells through both extrinsic and intrinsic pathways. PA increased the antioxidant capacity of THLE2 cells with increasing concentrations, which describes its antioxidant power. Additionally, none of the tested levels of PA caused oxidative DNA damage on THLE2 cells, but its high concentration increased genetic damages on HepG2. Taken together, <i>P. furfuracea</i> lichen and its metabolite, PA, would be a promising alternative for complementary treatments against liver cancer.
DOI: 10.6084/m9.figshare.17921670
title: Forest management and conservation of faunal diversity in Italy: a review

description: We re-examined the knowledge on the relationships between fauna and forest management in Italy. We focused our attention on Vertebrates, including small mammals (Rodents and Soricomorphs), bats, birds, reptiles and amphibians, and on carabid and saproxylic beetles. We found that nearly all groups respond in accordance with Angelstam’s scheme of the traditional forestry cycle, with open habitat specialists followed by generalists and forest specialists when pristine conditions have been attained, though with some differences for some taxa. In all groups, some forest “superspecialists” or old growth indicators could be found, in (sub)Mediterranean forests some carabid beetles could be defined as “dendrophilous,” i.e. associated with the presence of old trees. Poplar plantations are poor substitutes for native forests, as well as exotic conifers. We propose a model for an ideal forest structure that may efficiently preserve the faunal components, at the microscale level this coincides with the structure of an unmanaged old growth forest stand, marked also by a deep and humus-rich soil layer. Some caveats at the landscape scale have dealt with in relation to the size of the designed area, in order to avoid fragmentation effects. A sustainable harvesting scheme has indicated in the “systemic silviculture” proposed by Ciancio and other scientists.