cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7861226
title: MUSES Fractional Vegetation Coverage (FVC) 8-Day Global 500m SIN Grid in 2001

description: The MUltiscale Satellite remotE Sensing (MUSES) product suite includes products with different spatial and temporal resolutions for parameters such as Normalized Difference Vegetation Index (NDVI), Near-Infrared Reflectance of Vegetation (NIRv), Leaf Area Index (LAI), Fraction of Absorbed Photosynthetically Active Radiation (FAPAR), Fractional Vegetation Coverage (FVC), Gross Primary Production (GPP), Net Primary Production (NPP). For more information about the MUSES products, please refer to this website (https://muses.bnu.edu.cn/). This dataset is the MUSES global FVC product at 500m spatial resolution and 8-day temporal resolution. The MUSES FVC product is provided on a Sinusoidal grid and spans from 2000 to 2018 (continuously updated). It was generated from the MUSES LAI product at 500m resolution and other ancillary information using the complement to unity of the transmittance of light through the entire canopy in the nadir viewing direction (Xiao <em>et al</em>., 2016). The MUSES FVC values are physically consistent with the corresponding MUSES LAI values. The MUSES FVC product is spatially complete and temporally continuous. This dataset is the MUSES FVC product in 2001. <em>Please <strong>click here</strong> to download the MUSES FVC product <strong>in 2000</strong></em>, and <em><strong>click here</strong> to download the MUSES FVC product <strong>in 2002</strong></em>. <strong>Dataset Characteristics:</strong> Spatial Coverage: Global Temporal Coverage: 2001 Spatial Resolution: 500m Temporal Resolution: 8 days Projection: Sinusoidal Data Format: HDF Scale: 0.004 Valid Range: 0 – 250 <strong>Citation </strong>(Please cite this paper whenever these data are used)<strong>:</strong> Xiao Zhiqiang, <em>et a</em>l. (2016). Estimating the Fractional Vegetation Cover from GLASS Leaf Area Index Product. <em>Remote Sensing</em>, 8, 337. If you have any questions, please contact Prof. Zhiqiang Xiao (zhqxiao@bnu.edu.cn).
DOI: 10.15151/esrf-es-1057344934
title: Molecular machines in energy transduction, cellular signaling and defense processes

description: Since this BAG is composed of seven different working groups from three different locations (university of Cologne, university of Bochum, university of Düsseldorf), the projects for this proposal are of rather heterogeneous nature. Nonetheless, we are focusing on 5 main topics: 1.) proteins involved in transport processes, transporters or channels, either embedded in the membrane or acting in the cytosol (e.g. ABC transporters, fusion proteins, regulators) 2.) proteins involved in the immune system, pathogen invasion or defense/resistance processes (dehydratases, toxins, binding proteins) 3.) proteins involved or associated with diseases like cancer or developmental disorders (e.g. protein kinase, toxins, antibodies) 4.) enzymes of putative industrial use to encounter increasing environmental pollution (e.g. transaminases, estereases) 5.) proteins involved in light harvesting, photosynthesis (C3/C4 pathways) and chromophore binding proteins (e.g. synthases, photosensor domains)
DOI: 10.15151/esrf-es-1059601926
title: Macromolecular crystallography at the Philipps University Marburg (MarBAG)

description: Located at the Philipps-University-Marburg and the Max-Planck-Institute for terrestrial Microbiology in Marburg, Germany, the MarBAG employs X-ray crystallography to reveal fundamental mechanisms of key biological processes involving synthesis, assembly and function of macromolecular machines and cellular structures (e.g. CO2-fixation pathways, flagellar biosynthesis, CRISPR-Cas Systems, cell-wall-related processes, phage-bacteria relationships). Furthermore, we are interested in plant-pathogen interactions and the function of nucleotide derived signalling molecules in cellular stress physiology and organization. A 200 keV cryo-electron microscope was recently installed at the UMR to complement our efforts to structurally characterize macromolecular complexes, which do not readily crystallize. Thus, we can now routinely screen and quality check samples for cryo-electron microscopy and produce structures of 3Å resolution.
DOI: 10.15151/esrf-es-1078907414
title: Heidelberg BAG (HeidelBAG)

description: The HeidelBAG unites macromolecular crystallography of EMBL Heidelberg and the Heidelberg University Biochemistry Center (BZH). Central to all projects are large assemblies involved in chromosome organization and transcription control, in nuclear and cytoplasmic RNA regulation and modification, in translational control by ribosome associated factors or further in protein targeting, membrane protein insertion or post-translational modification. While O. Barabas from EMBL has left the BAG, Svetlana Dodonova and Sebastian Eustermann at EMBL will join and add projects on chromatin organization. Nearly all projects make use of integrated structural biology techniques (MX, SAXS/SANS, NMR, cryo-EM, AI approaches) that are combined with complementary methods, a strategy that warranties the continuous success of the BAG. More and more the detailed architecture and mechanistic description of entire macromolecular machines come into focus. The BAG reports on 17 publications and 30 PDB entries.
DOI: 10.15151/esrf-es-1174955471
title: Inhouse research

description: Interaction between phospholipid membranes and proteins will be studied using time-resolved SAXS and stopped-flow mixing.
DOI: 10.17632/w8cvdmwdhv.1
title: Complete database ideal and real home

description: The two datasets presented here were initially a single database. The database condensed survey questionnaire responses from 100 participants located in Los Guayacanes neighborhood, la Chorrera, Panama.
DOI: 10.17632/n9thzj2f8y.2
title: Geochemical Data of Major and Trace Elements of the BIF of ZD Fm of the RGB

description: Whole rock geochemical data (wt.%) of the 20 selected samples of Banded Iron Formation (BIF) of the Zandrivierspoort Formation (Fm) of the Rhenosterkoppies Greenstone Belt (RGB) in a descending order are: SiO2 > FeO > MgO > CaO > MnO > Al2O3 > P2O5 > K2O > Na2O > BaO > Cr2O3 > ZrO2 > TiO2 > SrO > V2O5. The trace elements data (ppm) are highest for Ba (476.13), Co (21), and V (129.34), Ni (56,79), and lowest for U (0.20), Sb (0.28), and Cd (0,10). No significant enrichment observed, nonetheless, some transition elements were enriched and their variations are: Ni (1.10 – 56.79), Cu (0.30 – 25.89), Pb (0.10 – 13.00), Ta (0.08 – 11.35), W (1.91 – 17.32). The RGB BIF Fe deposits are depleted in high field strength elements (HFSE) with averages of Ta (1.62), Th (1.34), Sc (4.01), Y (6.00), Zr (9.18). Large ion lithophile elements (LILE) and their average contents are relatively elevated, e.g. Rb (11.11), Sr (6.24), Ba (87.54). 

The average concentrations (ppm) of the rare earth elements (REE) of BIF samples of the RGB in a descending order are: Ce (10.95), La (10.38), Nd (8.81), Y (6.00), Sm (1.94), Yb (0.67), Eu (0.71), Tb (0.29), and Lu (0.10). The enrichment of light rare earth elements (LREE) relative to heavy rare earth elements (HREE) is shown by the ratios of chondrite normalized (La/Sm)n, (La/Yb)n, and (Tb/Yb)n. Chondrite-normalised REE show strong LREE fractionation with (La/Yb)n 18.10 on average. The RGB BIF REE patterns show enrichment in LREE with (La/Sm)n = 3.52 relative to the HREE with (Tb/Yb)n = 2.75. Correspondingly, the RGB BIF samples show a very weak (+) Eu anomaly with Eu/Eu* = Eu(n)/(0.67Sm(n) + 0.33Tb(n)) = 0.09 when normalized against chondrite values by multiplying Anders and Grevesse (1989) values by the factor 1.36, following after (Boynton; 1985; Taylor and McClennan, 1985). In comparison, the REE data show a weak negative (-) Ce anomaly (Ce/Ce* = Ce/Ce* = log[Cen/(La(n) x Nd(n))1/2] = -0.82 (Ndema et al., 2020; Chombong et al., 2017; Akagi and Masuda, 1998).

Pearson’s correlation matrix and binary plots display negative correlations of FeO with La, Ce, Nd, Sm, Eu, Tb, Y, Yb, and Lu. Conversely, unlike FeO, SiO2 shows a positive correlation with La, Ce, Nd, Sm, Eu, Tb, Y, Yb, and Lu.
DOI: 10.17632/dhp6rw7rmj.1
title: Subglacial sediment and bedrock mineralogy and chemistry from the St. Elias Mountains, Yukon, Canada

description: Chemical digest data, XRD results and excel outputs for the automated mineralogy results of rock and sediment samples. Images from automated mineralogy and code can be downloaded at https://github.com/jwheelsc/grain/sorting
DOI: 10.17632/vxvnb33ybd.1
title: Alterations in skeletal muscle abundance of protein turnover, stress, and antioxidant proteins during the periparturient period in dairy cows fed ethyl-cellulose rumen-protected methionine

description: This is a supplementary file for publication with doi: 10.3168/jds.2022-23187. Table S1, specific information of the antibodies used in the study, including manufacturer, catalog number, and dilution ratio. Table S2, RT-qPCR performance among the 7 genes measured in skeletal muscle of dairy cows (n = 10/diet). Figure S1, Representative gel images of the proteins detected.
DOI: 10.17632/8gcncg6zkt.1
title: ARCOS, a computational approach for automatic recognition of collective signalling

description: This repository contains supplementary data for the publication: Gagliardi et al. (2022) "ARCOS, a computational approach for automatic recognition of collective signalling". 

The supplementary data contains:

* CSV files with image segmentation results,
* R notebooks with results of the analysis,
* Jupyter notebooks to view the results in the napari image viewer.

Raw image data available upon request.
DOI: 10.17632/8gcncg6zkt.2
title: ARCOS, a computational approach for automatic recognition of collective signalling

description: This repository contains supplementary data for the publication: Gagliardi et al. (2022) "Automatic detection of spatio-temporal signalling patterns in cell collectives". 

The supplementary data contains:

* CSV files with image segmentation results,
* R notebooks with results of the analysis,
* Jupyter notebooks to view the results in the napari image viewer.

Raw image data available upon request.
DOI: 10.17632/ybz8tcvnv9.1
title: Context embeddings trained on short sequence FASTA files for human alternative splicing

description: Data to generate "FIGURE 5: Context embeddings trained on short sequence FASTA files for human alternative splicing – n = 10,541" for "Vector Embeddings by Sequence Similarity and Context for Improved Compression, Similarity Search, Clustering, Organization, and Manipulation of cDNA Libraries".
DOI: 10.17632/ybz8tcvnv9.2
title: Context embeddings trained on short sequence FASTA files for human alternative splicing

description: Data to generate "FIGURE 5: Context embeddings trained on short sequence FASTA files for human alternative splicing – n = 10,541" for "Vector Embeddings by Sequence Similarity and Context for Improved Compression, Similarity Search, Clustering, Organization, and Manipulation of cDNA Libraries" by Daniel H. Um, et al.
DOI: 10.17632/gvn68hz8sg.1
title: QP

description: Datasets and computer codes to reproduce Tables and Figures of the paper.
DOI: 10.17632/ryghfbpnd4.1
title: University students' perceptions about the Russia-Ukraine war. A global survey with Ecuadorian dataset.

description: The dataset contains 593 Ecuadorian university students' opinions about the possible scenarios and actions in the future due to the Russia -Ukraine war in 2022. The data collection tool is a Global online survey disseminated in Ecuador via social media inviting during one month to all Ecuadorian university students as voluntary participants. The survey of 34 items covers ten subjects: socio-demographic characteristics, general perception, economic circumstances, personal circumstances, military and other circumstances, actions and sanctions, response satisfaction, felt emotions, post-war era, and general reflections. The material should interest researchers in Education, Public Policies, and Psychology, among other areas.
DOI: 10.17632/wbdkr6wcb3.1
title: Fire risk - Performance code

description: Code used to assess the accuracy of fire risk.
DOI: 10.17632/cr9jf45xrr.1
title: Context embeddings trained on short sequence FASTA files with binding site

description: Data to generate "FIGURE 4: Context embeddings trained on short sequence FASTA files with binding site – N = 28,052" for "Vector Embeddings by Sequence Similarity and Context for Improved Compression, Similarity Search, Clustering, Organization, and Manipulation of cDNA Libraries".
DOI: 10.17632/cr9jf45xrr.2
title: Context embeddings trained on short sequence FASTA files with binding site

description: Data to generate "FIGURE 4: Context embeddings trained on short sequence FASTA files with binding site – N = 28,052" for "Vector Embeddings by Sequence Similarity and Context for Improved Compression, Similarity Search, Clustering, Organization, and Manipulation of cDNA Libraries" by Daniel H. Um, et al.
DOI: 10.17632/zj9ms7h26y.1
title: Supplementary Material-Birth weight, cardiometabolic factors and coronary heart disease: a Mendelian randomization study

description: This is the Supplementary material for the manuscript entitled "Birth weight, cardiometabolic factors and coronary heart disease: a Mendelian randomization study".
DOI: 10.17632/nnmb6m5p5j.1
title: Transcriptional space-time mapping identifies concerted immune and stromal cell patterns and gene programs in wound healing and cancer (Human scRNA-Seq sample dataset))

description: Feature, barcode and count matrix for the combined human scRNA-Seq dataset. Samples.csv file denotes patient ID for each cell where HNSC = Head and Neck Squamous Cell and LUNG = Lung Adenocarcinoma. N = Adjacent normal and T = Tumor
DOI: 10.17632/98mhm7ycvy.1
title: Data for "In-situ redox conditions in hydrothermal diamond-anvil cell experiments using various metal gaskets"

description: Data for "In-situ redox conditions in hydrothermal diamond-anvil cell experiments using various metal gaskets": Raman spectra and calculation for oxygen fugacities in HDAC chambers.
DOI: 10.17632/p2zprmg8d6.1
title: feco3_structures

description: CRYSTAL structure data for bulk and surface terminations of FeCO3
DOI: 10.17632/cw2m4jkr46.1
title: Attitude of undergraduate and postgraduate physical therapy students towards persons with disability

description: - Examining the attitude of undergraduate and postgraduate physical therapy students toward a person with a disability. The study will be taken among the total of physical therapy undergraduate and postgraduate students from MMIPR. The study is about to be conducted for a period of 7 months from August 2022 to May 2023. In the initial phase, a questionnaire was developed which is used to assess the student’s attitude toward a person with a disability.  A questionnaire was made which was presented to the expert panel containing 6 experts to validate the questionnaire.The present study concluded that 71.19 % of people had a positive attitude toward treating people with disabilities among undergraduate and postgraduate physical therapy students.
DOI: 10.17632/cw2m4jkr46.2
title: Attitude of undergraduate and postgraduate physical therapy students towards persons with disability

description: - Examining the attitude of undergraduate and postgraduate physical therapy students toward a person with a disability. The study will be taken among the total of physical therapy undergraduate and postgraduate students from MMIPR. The study is about to be conducted for a period of 7 months from August 2022 to May 2023. In the initial phase, a questionnaire was developed which is used to assess the student’s attitude toward a person with a disability.  A questionnaire was made which was presented to the expert panel containing 6 experts to validate the questionnaire.The present study concluded that 71.19 % of people had a positive attitude toward treating people with disabilities among undergraduate and postgraduate physical therapy students.
DOI: 10.17632/cswgkr58y5.1
title: Sustainability of Mexican Electric System

description: The complete data updated to 2022 of all the generating sources of electrical energy in Mexico, registered in the Energy Information System and the Program for the Development of the National Electrical System (PRODESEN) of the Government of Mexico, are presented. In addition, a code of an optimization process elaborated with Macros in Excel is included, which was used to arrive at the results shown in the article "Possible viable development paths for the Mexican Energy Transition"
DOI: 10.17632/zny49zs5gt.1
title: International visitor arrivals to Ecuador registered during the period 2007-2018

description: This database is the result of processing international entries to Ecuador during the period 2007-2018 registered by the National Institute of Statistics and Census of Ecuador.
DOI: 10.17632/cm2rvc3h94.1
title: Core stability non-specific LBP

description: Context: Pain and altered motor control are consequences of chronic low back pain. Objectives: The present study investigated the effects of 6-week Swiss ball core stabilization on pain and lumbopelvic motor control in patients with nonspecific chronic low back pain (LBP). Design: This is a randomized clinical pilot study. Setting: Laboratory. Participants: Twenty-four patients (12 females) with nonspecific chronic LBP (mean [SD]: age=42.08 [7.05] y) participated. Intervention: Participants were randomly assigned to experimental and control (n=12) groups. The experimental group performed core stability exercises for six weeks, and the control group received routine physical therapy. Main Outcome Measures: Pain and motor control were assessed at baseline, at the end of the intervention, and at follow-up. Results: Core intervention led to a significant increase in motor control in post-test (P<.001, Cohen’s d=6.04) but not in follow-up, and a significant decrease in pain intensity in post-test (P<.001, Cohen’s d=3.31) and follow-up (P<.001, Cohen’s d=2.98). Also, significant differences were observed between the two groups for all outcome measures after the intervention (P<.05). Conclusion: Compared to routine physical therapy, the six-week core stability exercises on Swiss ball resulted in improvements in pain intensity and lumbopelvic motor control in patients with nonspecific chronic LBP.
DOI: 10.17632/97sfz4yr82.1
title: Supplementary Material-Birth weight, cardiometabolic factors and coronary heart disease: a Mendelian randomization study

description: Supplementary Material belonging to the article "Birth weight, cardiometabolic factors and coronary heart disease: a Mendelian randomization study".
DOI: 10.17632/hjkr5yz9wf.1
title: Knowledge about physiotherapy as a carrier option among senior secondary students of Government school in Haryana

description: Now a days mostly people prefer physiotherapy as compared to surgery. Physiotherapy helps to get relieve from pain. Physiotherapy has high source of income. But most of people are not aware about physiotherapy. So a survey was conducted to check the knowledge about physiotherapy as a carrier option. It was observed that most of the students were aware about physiotherapy but some students don't know about it.
DOI: 10.17632/dzvgyxkx2f.1
title: SenseFi: A Library and Benchmark on Deep Learning Empowered WiFi Human Sensing

description: SenseFi is the first open-source benchmark and library for WiFi CSI human sensing, implemented by PyTorch. The state-of-the-art networks, including MLP, CNN, RNN, Transformers, etc, are evaluated on four public datasets across different WiFi CSI platforms.
DOI: 10.17632/hx34xrz7yw.1
title: Validation and Reliability of Knowledge, Attitude, and Practice of Coronavirus Disease 2019 Questionnaire

description: This data set contains raw data related to validation and Reliability of Knowledge, Attitude, and Practice of Coronavirus Disease 2019 Questionnaire
DOI: 10.17632/8sfn3bsjhw.1
title: Prevalence and Awareness of the Impact on Hyperhidrosis in Physiotherapy Students: An online cross-sectional study

description: Hyperhidrosis is characterized by excessive sweating that exceeds the body's thermoregulatory and metabolic requirements. Because they have the highest number of glands called eccrine glands, which produce the most hypotonic secretion known as sweat, the palmar, plantar, and axillary regions are most frequently affected, either separately or together.
DOI: 10.17632/8c4zbxfvwk.2
title: GERDA datasets including NGS and SGA data

description: Datasets linked to publication "Revealing viral and cellular dynamics of HIV-1 at the single-cell level during early treatment periods", Otte et al 2023 published in Cell Reports Methods
pre-ART (antiretroviral therapy) cryo-conserved and and whole blood specimen were sampled for HIV-1 virus reservoir determination in HIV-1 positive individuals from the Swiss HIV Study Cohort. Patients were monitored for proviral (DNA), poly-A transcripts (RNA), late protein translation  (Gag and Envelope reactivation co-detection assay, GERDA) and intact viruses (golden standard: viral outgrowth assay, VOA).
In this dataset we deposited the pipeline for the multidimensional data analysis of our newly established GERDA method, using DBScan and tSNE. For further comprehension NGS and Sanger sequencing data were attached.

Resubmitted to Cell Reports Methods (Jan-2023), accepted in principal (Mar-2023)

GERDA is a new detection method to decipher the HIV-1 cellular reservoir in blood (tissue or any other specimen). It integrates HIV-1 Gag and Env co-detection along with cellular surface markers to reveal 1) what cells still contain HIV-1 translation competent virus and 2) which marker the respective infected cells express. The phenotypic marker repertoire of the cells allow to make predictions on potential homing and to assess the HIV-1 (tissue) reservoir.
All FACS data were acquired on a LSRFortessa BD FACS machine (markers: CCR7, CD45RA, CD28, CD4, CD25, PD1, IntegrinB7, CLA, HIV-1 Env, HIV-1 Gag)
Raw FACS data (pre-gated CD4CD3+ T-cells) were arcsin transformed and dimensionally reduced using optsne. Data was further clustered using DBSCAN and either individual clusters were further analyzed for individual marker expression or expression profiles of all relevant clusters were analyzed by heatmaps.
Sequences before/after therapy initiation and during viral outgrowth cultures were monitored for individuals P01-46 and P04-56 by Next-generation sequencing (NGS of HIV-1 Envelope V3 loop only)  and by Sanger (single genome amplification, SGA)

data normalization code (by Julian Spagnuolo)
FACS normalized data as CSV (XXX_arcsin.csv)
OMIQ conText file (_OMIQ-context_XXX)
arcsin normalized FACS data after optsne dimension reduction with OMIQ.ai as CSV file (XXXarcsin.csv.csv)
R pipeline with codes (XXX_commented.R)
P01_46-NGS and Sanger sequences
P04_56-NGS and Sanger sequences