cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.c9kn2c
title: Occurrence Download

description: A dataset containing 516 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fulvia mutica (Reeve, 1844)"
 ]
}

 The dataset includes 516 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002127-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yyjeua
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cnestus mutilatus Dole & Cognato, 2010",
 {
 "or" : [
 "Country is United States of America",
 "Country is United States",
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 24 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129858-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5bya6s
title: Occurrence Download

description: A dataset containing 313 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potamocorbula amurensis (Schrenck, 1862)"
 ]
}

 The dataset includes 313 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0310028-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a5qb9q
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gymnothorax formosus Bleeker, 1864"
 ]
}

 The dataset includes 28 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002135-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.adxs3t
title: Occurrence Download

description: A dataset containing 256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corythucha arcuata (Say, 1832)",
 {
 "or" : [
 "Country is United States of America",
 "Country is United States",
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 256 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129862-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czartk
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((18.05603 -34.49158,19.78088 -34.96399,22.5 -35.2002,23.51074 -33.79395,18.21533 -32.17896,17.77039 -32.72278,18.05603 -34.49158))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Peripatopsis capensis (Grube, 1866)"
 ]
}

 The dataset includes 34 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075922-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.143937
title: OSTRACA COPTE IFAO_nu_2012_05317

description: Référence : nu_2012_05317<br />Site : Edfou<br />Type : photographie<br />
DOI: 10.15468/dl.hg32wu
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vepricardium asiaticum (Bruguière, 1789)"
 ]
}

 The dataset includes 119 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002134-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.143938
title: OSTRACA COPTE IFAO_nb_1978_02200

description: Référence : nb_1978_02200<br />Site : Edfou<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.143939
title: OSTRACA COPTE IFAO_nb_1978_02201

description: Référence : nb_1978_02201<br />Site : Edfou<br />Type : photographie<br />
DOI: 10.15468/dl.qzgfap
title: Occurrence Download

description: A dataset containing 15845 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eragrostis pilosa (L.) P.Beauv., Eragrostis multicaulis Steud.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 15845 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240180-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.143940
title: OSTRACA COPTE IFAO_nb_1978_02202

description: Référence : nb_1978_02202<br />Site : Edfou<br />Type : photographie<br />
DOI: 10.15468/dl.9xe885
title: Occurrence Download

description: A dataset containing 411 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viola novae-angliae House"
 ]
}

 The dataset includes 411 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031923-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.143941
title: OSTRACA COPTE IFAO_nu_2012_05416

description: Référence : nu_2012_05416<br />Site : Edfou<br />Type : photographie<br />
DOI: 10.15468/dl.eapwtr
title: Occurrence Download

description: A dataset containing 495890 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Corylus avellana L."
 ]
}

 The dataset includes 495890 records from 874 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001475-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qf7zfc
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000000.0",
 "GbifRegion is Latin America and the Caribbean",
 "Geometry POLYGON((-97.79016 15.98473,-97.76043 15.97277,-97.68302 15.96041,-97.67651 15.96887,-97.66155 15.97733,-97.55681 15.96041,-97.53209 15.96822,-97.42606 15.93829,-97.41695 15.9435,-97.36621 15.93699,-97.34994 15.9435,-97.32587 15.9409,-97.27448 15.93439,-97.2361 15.92528,-97.21333 15.92073,-97.1783 15.98473,-97.19741 15.98938,-97.19276 15.99661,-97.21496 16.009,-97.22013 16.00177,-97.25214 16.01881,-97.26608 16.00642,-97.27589 16.00332,-97.26195 16.01933,-97.26505 16.02707,-97.28983 16.02449,-97.29396 16.00849,-97.32133 16.00332,-97.31978 15.98835,-97.35024 15.98112,-97.36005 15.98525,-97.37812 15.96563,-97.40497 16.00332,-97.41685 16.04824,-97.40962 16.05599,-97.41582 16.0627,-97.41478 16.07922,-97.40601 16.07664,-97.38948 16.11227,-97.40342 16.12363,-97.39052 16.14738,-97.40755 16.14273,-97.44112 16.16442,-97.43905 16.1861,-97.44576 16.19901,-97.46177 16.19953,-97.45144 16.26407,-97.45816 16.26975,-97.469 16.26459,-97.47313 16.27336,-97.5165 16.246,-97.5258 16.24961,-97.5924 16.23774,-97.59911 16.24342,-97.60531 16.23619,-97.60325 16.22586,-97.61099 16.22586,-97.62287 16.23619,-97.62441 16.20676,-97.64042 16.20521,-97.64868 16.22483,-97.6714 16.23722,-97.70238 16.21605,-97.71632 16.21554,-97.72097 16.20521,-97.71426 16.1892,-97.72458 16.18456,-97.73285 16.16339,-97.74162 16.16493,-97.74266 16.14635,-97.72768 16.08852,-97.73698 16.0818,-97.73336 16.07354,-97.76331 16.02243,-97.77054 16.02862,-97.79119 16.01933,-97.79171 16.00177,-97.78086 15.99558,-97.79016 15.98473))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 232 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070110-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwxngs
title: Occurrence Download

description: A dataset containing 94430 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "TaxonKey is Gnetopsida"
 ]
}

 The dataset includes 94430 records from 866 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070106-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28209578
title: NardoGenome_Table2

description: Table 2. The sequence difference between the determined genome and the reference genome (GenBank accession number AP018160).
DOI: 10.6084/m9.figshare.28209578.v1
title: NardoGenome_Table2

description: Table 2. The sequence difference between the determined genome and the reference genome (GenBank accession number AP018160).
DOI: 10.15468/dl.m5ffe8
title: Occurrence Download

description: A dataset containing 697518 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quercus suber L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 697518 records from 407 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070102-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14636552
title: Analysis Spreadsheet: Software Engineering and Project Management Forums on Stack Exchange

description: This dataset supports the study on productivity challenges in the software industry by analyzing discussions from two communities on the Stack Exchange platform: Software Engineering and Product Manager. It comprises qualitative data collected through a gray literature review, focusing on identifying factors that affect productivity, their impacts on professionals, and strategies employed to address these challenges.

Key insights from the dataset include:



21 identified factors influencing productivity, such as time management, adoption of new technologies, challenges in measuring productivity, and context switching.

17 documented impacts on professionals, including stress, demotivation, and perceived productivity variation.

A range of proposed strategies, from task reorganization to mental reframing, showcasing how professionals balance technical and human-centric solutions.


This dataset provides a rich resource for researchers interested in understanding the nuanced dynamics of productivity in software development. By highlighting both technical and human factors, it serves as a foundation for studies aiming to enhance team performance and develop actionable strategies to improve workplace productivity.
DOI: 10.5281/zenodo.14636553
title: Analysis Spreadsheet: Software Engineering and Project Management Forums on Stack Exchange

description: This dataset supports the study on productivity challenges in the software industry by analyzing discussions from two communities on the Stack Exchange platform: Software Engineering and Product Manager. It comprises qualitative data collected through a gray literature review, focusing on identifying factors that affect productivity, their impacts on professionals, and strategies employed to address these challenges.

Key insights from the dataset include:



21 identified factors influencing productivity, such as time management, adoption of new technologies, challenges in measuring productivity, and context switching.

17 documented impacts on professionals, including stress, demotivation, and perceived productivity variation.

A range of proposed strategies, from task reorganization to mental reframing, showcasing how professionals balance technical and human-centric solutions.


This dataset provides a rich resource for researchers interested in understanding the nuanced dynamics of productivity in software development. By highlighting both technical and human factors, it serves as a foundation for studies aiming to enhance team performance and develop actionable strategies to improve workplace productivity.
DOI: 10.15468/dl.9fegyg
title: Occurrence Download

description: A dataset containing 12142287 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Pl@ntNet automatically identified occurrences"
 ]
}

 The dataset includes 12142287 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070087-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vc68r4
title: Occurrence Download

description: A dataset containing 2669 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "Geometry POLYGON((-72.94887 12.6414,-76.60799 10.61721,-78.32077 7.58092,-78.08721 4.15536,-79.72213 1.50834,-76.37443 -0.98297,-73.49385 -2.54004,-72.48175 -3.00716,-71.00253 -3.00716,-71.23609 -4.17497,-69.44546 -4.87565,-68.66693 -1.29438,-69.36761 -0.20444,-68.43337 0.34054,-68.90049 1.43049,-66.40917 3.22112,-67.34342 4.38892,-66.95415 6.25741,-69.05619 6.72453,-69.83473 7.42521,-71.70322 7.50307,-72.17034 9.06014,-72.32604 10.07223,-70.3797 12.40784,-71.62536 13.26423,-72.94887 12.6414))",
 "OccurrenceStatus is Present",
 "TaxonKey is Vultur gryphus Linnaeus, 1758"
 ]
}

 The dataset includes 2669 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070111-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6v7ws2
title: Occurrence Download

description: A dataset containing 293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Copsychus cebuensis (Steere, 1890)"
 ]
}

 The dataset includes 293 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070112-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.drh7zh
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Megaleporinus elongatus (Valenciennes, 1850)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 32 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003467-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10948975
title: Dataset for: Automated detection of gibbon calls from passive acoustic monitoring data using convolutional neural networks in the "torch for R" ecosystem.

description: This is the supporting data for: Clink, Dena J., et al. "Automated detection of gibbon calls from passive acoustic monitoring data using convolutional neural networks in the "torch for R" ecosystem." arXiv preprint arXiv:2407.09976 (2024).

Link to GitHub Repository: https://github.com/DenaJGibbon/torch-for-R-gibbons

Summary of data and scripts.

To run the scripts download the data from Zenodo and add to your project directory.

   


R Script
Summary of Referenced Folders
Top-Level Data or Results Folders Referenced


Part 1a. Variability benchmarking results
Training/test image folders (Danum, Jahoo, Combined); model run results for variability benchmarking.
data/training_images_sorted/, results/part1/


Part 1b. Evaluate variability benchmarking results
Evaluation output folders.
results/part1/


Part 2a. Train CNNs over multiple epochs
Training/test data for all sites; performance outputs for initial CNN evaluations (Cambodia, Malaysia).
data/training_images_sorted/, results/part2/


Part 2b. Train CNNs (cont.)
Model output folders (binary & multi-class); rerun AUC updates; model type labels.
results/part2/


Part 3a. Data augmentation
Augmented training images (Danum, Jahoo, Combined); test sets; model run outputs based on augmented data.
data/DataAugmentation/, data/training_images_sorted/, results/part3/


Part 3b. Evaluation data augmentation
Outputs from evaluating models trained on augmented data; model labels by type.
results/part3/


Part 3c. Eval. augmentation on different test set
Evaluation outputs for external test data (Maliau + Vietnam); multi-class model run outputs.
TestData/, results/part3/


Part 4b. Comparison with BirdNET
BirdNET outputs for Jahoo, Danum, and Combined data; test output from jittered data augmentation.
results/part4/, results/part3/


Part 5. Final model performance
Final evaluation images (per site); top-performing model folders; final performance CSVs.
data/CombinedImagesWAEvaluation/, results/part5/


Part 6. Deploy Model over PAM data
Longer sound files (Jahoo); final trained model checkpoint (.pt file) used for inference.
data/WideArrayEvaluation/, results/part3/


Part 7. Call Density Plots
Files for call density visualizations: GPS, selections, manually verified wavs or images (TP/FP).
data/calldensityplots/
DOI: 10.15468/dl.qkj3tn
title: Occurrence Download

description: A dataset containing 355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hypsignathus monstrosus H.Allen, 1861",
 "Year 1860-2025"
 ]
}

 The dataset includes 355 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003465-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/nxldyf
title: PAN-00182032 - composite shoe buckle

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00182032&lt;/p&gt;
description: Modified: 2025-11-03T14:47:24+01:00
DOI: 10.15468/dl.vumq5z
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chiropotes utahickae"
 ]
}

 The dataset includes 26 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059080-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8h93ah
title: Occurrence Download

description: A dataset containing 34600 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia mearnsii",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 34600 records from 184 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059079-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.428xku
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Laciolina laevigata, Tellina bayleana, Tellina concinna, Tellina laevigata, Tellina laevigata stella, Tellina marginalis, Tellina stella)",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059081-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vg8aw7
title: Occurrence Download

description: A dataset containing 525 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalyptus decipiens",
 "HasCoordinate is true"
 ]
}

 The dataset includes 525 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059082-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34810/data2860
title: Equus sp. 200

description: Skeleton of Equus sp 200.
description: IPA, 1.1.0
DOI: 10.17026/ar/o8vhd3
title: PAN-00173383 - arched bow brooch A1/B

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00173383&lt;/p&gt;
description: Modified: 2025-06-05T10:11:20+02:00
DOI: 10.5683/sp3/5owkls
title: Dissolved Organic Matter Composition and Environmental Characteristics of Lakes Across a Permafrost Gradient, Northwest Territories, Canada

description: This dataset contains environmental, chemical, isotopic, and molecular-level data used to assess how terrestrial inputs and in-lake processes shape dissolved organic matter (DOM) across a permafrost gradient in the Northwest Territories, Canada. The dataset includes lake water chemistry, shoreline porewater chemistry, stable carbon isotopes (δ¹³C), radiocarbon measurements (Δ¹⁴C), watershed and landscape attributes, and molecular formula assignments generated using Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS). Molecular data include assigned formulas and intensity-normalized abundance profiles for each sample. All variables required to reproduce the analyses in the associated manuscript are provided. This dataset supports the manuscript “Terrestrial inputs and in-lake processes shape dissolved organic matter along a permafrost gradient”
description: R, 4.3+
DOI: 10.3535/6e4-fsk-k7y
title: Carex viridula Michx.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.