DOI: 10.5281/zenodo.10023330
title: Version 1.1 of the Prymnesium parvum 12B1 gene annotation (12B1_v1.1.gff3)

description: Version 1.1 of the Prymnesium parvum 12B1 gene annotation (12B1_v1.1.gff3)

Version 1.1 of the P. parvum gene annotation (12B1_v1.1.gff3), consisting of liftover of the PKZILLA-1, -2, -3 gene models, and deletion of 25 PKZILLA intersecting gene models (see: 'all.remove.list.sorted.txt' herein).

Gene models use coordinates on the v1.1 genome assembly (See https://doi.org/10.5281/zenodo.10023322) . See the manuscript "Materials and Methods" section for full details.

seqkit sum checksums:

seqkit.v0.1_DLS_k0_8edb8802deab76385552fc29fea5cf1a     ./12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.CDS.fa.gz seqkit.v0.1_DLS_k0_7e2d020a8a56f03222f0784ec1639dd1     ./12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.gene.fa.gz seqkit.v0.1_DLS_k0_ef601824a71d9df80a64a91ac32d512b     ./12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.indCDSnt.fa.gz seqkit.v0.1_PLS_k0_8f7d4e7297064c8e0d6f27a553ab77a7     ./12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.indCDSpep.fa.gz seqkit.v0.1_DLS_k0_2a6086cd9efedb44247ebbe8aaeee624     ./12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.indExon.fa.gz seqkit.v0.1_DLS_k0_8bb493031e58ebdf17aea4f955e71103     ./12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.indIntron.fa.gz seqkit.v0.1_DLS_k0_559abfafd14eacd04de9c4d42af781a0     ./12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.mRNA.fa.gz seqkit.v0.1_PLS_k0_a191eccc0cef549096b1378eb2daef73     ./12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.pep.fa.gz

seqkit sum -g checksums:

seqkit.v0.1_DLS_k0_8edb8802deab76385552fc29fea5cf1a     ./12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.CDS.fa.gz seqkit.v0.1_DLS_k0_7e2d020a8a56f03222f0784ec1639dd1     ./12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.gene.fa.gz seqkit.v0.1_DLS_k0_ef601824a71d9df80a64a91ac32d512b     ./12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.indCDSnt.fa.gz seqkit.v0.1_PLS_k0_cab1b65ceffbcf7df147854bce8446d5     ./12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.indCDSpep.fa.gz seqkit.v0.1_DLS_k0_2a6086cd9efedb44247ebbe8aaeee624     ./12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.indExon.fa.gz seqkit.v0.1_DLS_k0_8bb493031e58ebdf17aea4f955e71103     ./12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.indIntron.fa.gz seqkit.v0.1_DLS_k0_559abfafd14eacd04de9c4d42af781a0     ./12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.mRNA.fa.gz seqkit.v0.1_PLS_k0_9b3df5c9fff5d12153ebf6276e03accb     ./12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.pep.fa.gz

openssl md5 checksums:

MD5(./12B1_v1.1.gff3)= 9c12bad1539f498def71773514e619fe

MD5(12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.CDS.fa.gz)= 4c906378b370bc616e95f20cf120220a

MD5(12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.gene.fa.gz)= 67180d18eb565f4ef35f15f907947ccc MD5(12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.indCDSnt.fa.gz)= 8d8c026126f1b7de39e1ac1998e3de84 MD5(12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.indCDSpep.fa.gz)= 129342891e59f683bbf6897bb246752f MD5(12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.indExon.fa.gz)= 3fe4024b0d97536c9c93013c896b67da MD5(12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.indIntron.fa.gz)= 948485b3349fe7f811a5a3bdff4cf182 MD5(12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.mRNA.fa.gz)= ae096f406382ad01010428470af08f0f

MD5(12B1_v1.1.gff3__12B1_scaffolds_v1.1.fasta.pep.fa.gz)= 54e71b13a1df106823fc3e8fc5df5ed6