cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5tb9t
title: MassIVE MSV000086992 - Global coordination of metabolic pathways in Escherichia coli by active and passive regulation
title: In this study, we identify the regulatory mechanisms that coordinate catabolism and anabolism in the bacterium Escherichia coli. Integrating protein, metabolite, and metabolic flux changes in genetically implemented gradual catabolic or anabolic limitations, we show that a combination of global and local mechanisms coordinates the response to metabolic limitations. To allocate proteomic resources between catabolism and anabolism, E. coli uses a simple global gene regulatory program. Surprisingly, this program is largely implemented by a single transcription factor Crp, which not only directly activates the expression of catabolic enzymes, but also indirectly reduces the expression of anabolic enzymes by passively sequestering cellular resources needed for their synthesis. However, this regulatory program rarely controls metabolic fluxes alone; instead, fluxes are further adjusted locally through passive changes in metabolite concentrations. Together, these mechanisms constitute a limited but effective global regulatory program that coarsely partitions resources between different parts of metabolism while ensuring the robust coordination of individual metabolic reactions.
DOI: 10.25934/00003105.0
title: Data Package for study.

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00003105.1
title: IPD datapackage for study 'A Multicenter Open-label Study of the Human Anti-TNF Monoclonal Antibody Adalimumab to Investigate Efficacy, Safety and Pharmacokinetics After Dose Escalation in Japanese Subjects With Crohn's Disease' and research request: 'Early changes in inflammatory biomarkers and long-term outcomes in patients with IBD: A pooled post-hoc analyses of clinical trials'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00003011.0
title: Data Package for study.

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00003011.1
title: IPD datapackage for study 'A Multi-Center, Double-Blind Study to Evaluate the Safety, Efficacy and Pharmacokinetics of the Human Anti-TNF Monoclonal Antibody Adalimumab in Pediatric Subjects With Moderate to Severe Crohn's Disease' and research request: 'Early changes in inflammatory biomarkers and long-term outcomes in patients with IBD: A pooled post-hoc analyses of clinical trials'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00004931
title: Early changes in inflammatory biomarkers and long-term outcomes in patients with IBD: A pooled post-hoc analyses of clinical trials

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.6084/m9.figshare.14115737
title: Table S1-Differential expression.xlsx

description: Differentially expressed genes from RNA seq in parental SK-MEL-239 cells grown in normal media versus resistant SK-MEL-239 cells grown in media supplemented with vemurafenib.
DOI: 10.6084/m9.figshare.14115737.v1
title: Table S1-Differential expression.xlsx

description: Differentially expressed genes from RNA seq in parental SK-MEL-239 cells grown in normal media versus resistant SK-MEL-239 cells grown in media supplemented with vemurafenib.
DOI: 10.6084/m9.figshare.13030436.v3
title: County-level crop nitrogen budget history in the US during 1970-2019

description: This document describes the datasets used for “Half-century history of crop nitrogen use efficiency in the conterminous United States: Variations over time, space and crop types”. The datasets include county-level nitrogen use efficiency and N surplus of eight crop types,in the U.S. from 1970 to 2019. The datasets reproduce the results of the manuscript and can be used to explore other topics.<br>
DOI: 10.15480/336.2881
title: Data from the paper: Study on the Cohesive Edge Crack in a Square Plate with the Cohesive Element Method

description: Results and complementary data for the paper: Study on the Cohesive Edge Crack in a Square Plate with the Cohesive Element Method. A numerical CEM-based model was built to compute the fracture process zone size for an edge crack in a finite square plate of different lengths. The fracture process zone size is given for different plate sizes, physical crack lengths and softening (cohesive) laws.
DOI: 10.5281/zenodo.4475468
title: rooftop and open space PV data for Austria

description: This data provides per building points data (each point is a buildings centroid) for all of Austria: building footprint PV yearly potential for this specific building per m2 and for the whole roof This data also provides open space data for Austria on a vector raster (point) dataset with a resolution of 250mx250m: each point provides data on kWh per m2 and year and numbers per kWp at the specific area data exists for: all open space areas agricultural areas vegetable areas crereal areas pasture areas
DOI: 10.5281/zenodo.4579252
title: CLEIT Dataset

description: This file includes the dataset used for "A Cross-Level Information Transmission Network for Predicting Phenotype from New Genotype: Application to Cancer Precision Medicine"
DOI: 10.5281/zenodo.4031714
title: CLEIT Dataset

description: This file includes the dataset used for "A Cross-Level Information Transmission Network for Predicting Phenotype from New Genotype: Application to Cancer Precision Medicine"
DOI: 10.17632/ywpjs6h3jr.2
title: Screening of Twelve Pea (Pisum sativum L.) Cultivars and its Isolates

description: To select suitable peas (Pisum sativum L) for protein extraction for further use as food ingredients, twelve different cultivars (Pisum sativum L.) were subjected to isoelectric precipitation and spray drying. Both, the dehulled pea flours and protein isolates, were characterized regarding their chemical composition and the isolates were analyzed for their functional properties, sensory profile and molecular weight distribution. All measurement results are shown in the raw data. The principal component analysis revealed similarities among certain pea cultivars regarding their physico-chemical and functional properties. The sensory profile of the individual isolates was rather similar, with an exception of the pea-like and bitter attributes, which were significantly different among the isolates.
DOI: 10.17632/fm7v43jrbk.1
title: Interplay of respiratory and systemic immune responses in the pathogenesis of severe COVID-19. Szabo et al.

description: Supplementary data files from 'Interplay of respiratory and systemic immune responses in the pathogenesis of severe COVID-19' by Szabo et al.
DOI: 10.17632/dc6m74vyt6.4
title: ‘Dr. Google, what is that on my skin?’ – Internet searches related to skin problems: Google Trends data from 2004 to 2019

description: Title: ‘Dr. Google, what is that on my skin?’ – Internet searches related to skin problems: Google Trends data from 2004 to 2019 Authors: Mikołaj Kamiński 1, Linda Tizek 2, Alexander Zink 2 Affiliations: 1 District Hospital in Oborniki, Szpitalna 2, 64-600 Oborniki, Poland 2 Technical University of Munich, School of Medicine, Department of Dermatology and Allergy, Munich, Germany Highlights &gt; Google Trends presents the popularity of Google queries since 2004 &gt; The study analyzed searches of Googles users related to skin symptoms &gt; Pruritus, perspiration, and skin rash gained the most attention &gt; The interest in all manifestations increases over time &gt; The searches presented explainable seasonal variations
DOI: 10.17632/t6b4s6xrhw.1
title: The Brave New World of Electric Vehicle Fleet Management

description: The attached excel sheets and screenshots are the results of three separate fleet procurement scenarios compared across three types of vehicle weight classes: light-duty vehicles, medium-duty vehicles, and heavy-duty vehicles. Results can be replicated by changing the inputs in Atlas Public Policy's Fleet Procurement Analysis Tool.
DOI: 10.17632/zk6scwv52p.1
title: A convolutional neural network for an automatic biopsy needle detection and segmentation on ultrasound images

description: The dataset contains a convolutional neural network (CNN) which was trained to segment a biopsy needle in 2D ultrasound images. Together with the network, source files of Matlab scripts and a few input images are provided. The files are enough to run experiments. See the `README' file for further instructions. The CNN structure was described in the article "An automatic biopsy needle detection and segmentation on ultrasound images using a convolutional neural network", currently under review in Ultrasonic Imaging. It is a fully automatic method that uses a CNN to detect a biopsy needle in 2D ultrasound images. In the paper, the CNN architecture is described, which was trained using the adaptive moment estimation optimizer. The needle is eventually located in the image by applying the Radon transform.
DOI: 10.17632/hg77f2d6dm.1
title: The Informal Social Support for Autonomy and Dependence in Pain Inventory Spanish Version (ISSADI-PAIN-SV)

description: Data used to validate the Informal Social Support for Autonomy and Dependence in Pain Inventory Spanish Version (ISSADI-PAIN-SV). Abstract Purpose Perceived social support plays a crucial role in the quality of life of individuals with chronic pain. The Informal Social Support for Autonomy and Dependence in Pain Inventory assesses two functions of social support: the promotion of autonomy and the promotion of dependence. The aim of this study was to adapt this instrument for Spanish-speaking populations. Methods The sample comprised 256 individuals with chronic pain. The structure of the questionnaire was analysed using confirmatory factor analysis, internal consistency indexes, and intercorrelations between the scales. Correlational analyses were performed to assess the associations between the Informal Social Support for Autonomy and Dependence in Pain Inventory and several criteria. Results The structure with the best fit had four related factors: emotional social support for the promotion of autonomy; instrumental social support for the promotion of autonomy; emotional social support for the promotion of dependence; and instrumental social support for the promotion of dependence. The scales showed adequate internal consistency. An association was found between higher levels of instrumental social support on the promotion of dependence and higher levels of pain-related disability and decreased daily functioning. The promotion of autonomy was related to better satisfaction with life. Conclusion The Spanish version of the Informal Social Support for Autonomy and Dependence in Pain Inventory shows appropriate psychometric properties. It is a useful instrument to assess the support relationships between patients with chronic pain and their relatives in order to prevent disability. Keywords Chronic pain · Social support · Autonomy · Dependence · Pain adaptation · Disability
DOI: 10.17632/hnx3sfdf38.1
title: Interpersonal needs questionnaire. Spanish validation

description: Spanish validation
DOI: 10.17632/b7bs59354g.1
title: Women passengers' opinion on transportation scenarios, challenges, ride hailing services and taxis in Nepal

description: The dataset includes survey data and interview data. The survey data is collected through a close ended questionnaire using 5 point likert scale. The sample group contained students, working women, elderly women and homemakers. Both online forms and paper forms were used to collect the data. Interview data was collected from practitioners and academicians in transportation, travel and hospitality and food delivery business. Transcripts were generated for recordings. 2 interviews conducted in a mix of english and nepali language was translated to english. The contents were categorised into themes.
DOI: 10.17632/yx2zmhmxkc.1
title: The history of genetic diversity and effective population size of isolated Microtus oeconomus population on Kis Balaton

description: The distribution of many species is fragmented due to human activities and isolated populations are often affected by genetic changes. Small populations are endangered by inbreeding depression, often leading to a low mean fitness of small populations and to an increased extinction risk. Using museum samples of protected Microtus oeconomus mehelyi from the years 1950, 1964 and 2000, we studied the population which inhabits the Kis Balaton area that has considerably changed by human activity in the last centuries. - sampled a total of 56 skin specimens which were collected in 1950 (32 specimens) and 1964 (24 specimens) -Samples washed in PBS overnight, put in sterile water for one hour and then cut into small pieces. - the QiaAmp DNA Mini Kit and DNeasy Blood & Tissue Kit (Qiagen) - In the Hungarian Natural History Museum - isolated DNA samples of M. oeconomus from Kis Balaton (collected in the years 1999 and 2000)- we used 26 of these samples. - Imicrosatellite genotyping using 14 microsatellite loci in 3 multiplex sets (published in Sládkovičová et al., 2018) using the touch-down PCR protocol - the multiple tubes approach - marker Ma54 rejected See also file "Read me"
DOI: 10.17632/mt9yps9scy.1
title: WSG34806 Adaptation Measures Assessment

description: MCA for Adaptation Measures Assessment for South Bangladesh.
DOI: 10.17632/3pr3cpx6cg.1
title: Jason ex-offender data comparing three conditions

description: Jason, L.A., Olson, B.D., & Harvey, R. (2015). Evaluating alternative aftercare models for ex- offenders. Journal of Drug Issues, 45(1), 53–68. Doleac, J.L., Temple, C., & Roberts, D.P.A (2020). Which prisoner reentry programs work? Replicating and extending analyses of three RCTs. International Review of Law and Economics, Published online Feb. 19, 2020.
DOI: 10.17632/dbvh59jg7j.1
title: Pre-Post-Test LPCA Data: Senior 5 Rwandan physics students

description: Light Phenomena Conceptual Assessment (LPCA). We collected data to validate and test this LPCA. The data may be reused in various ways. The MS Excel file contains the raw data and little analysis. This analysis can guide a research practitioner who is motivated to research in such tests.
DOI: 10.17632/y3tf8mw2dv.1
title: Raw data associated with Current Biology article "Analysis of narwhal tusks reveals life-long feeding ecology and mercury exposure".

description: This csv file provides mercury concentrations (ng/g dry weight) and stable isotope (13C and 15N) values for growth layer groups of 10 male narwhal tusks from western Greenland. All data is presented in figures of the manuscript published in Current Biology entitled "Analysis of narwhal tusks reveals life-long feeding ecology and mercury exposure".
DOI: 10.17632/7xnx7nvg5c.1
title: LDHU3_01.0050

description: Kinesin-13; Leishmania donovani
DOI: 10.17632/hfzs627ps3.1
title: Copper_Cliff_Offset_dyke

description: Structural data (field measurements). This file is Supporting Material 1 (of 1) to the following publication: Mathieu L., Riller U., Gibson L., Lightfoot P. (2021) Data on the geology and structure of the Copper Cliff embayment and offset dyke, Sudbury Igneous Complex, Canada. Data-in-Brief..
DOI: 10.17632/p55d743rbn.1
title: LDHU3_01.0040

description: Endonuclease/Exonuclease/phosphatase family; Leishmania donovani
DOI: 10.25416/ntr.14156729.v1
title: Writing Hacks

description: A blog discussing and offering tips for "writing for Fellowship". The blog can be accessed here Writing Hacks – NTU Fellowship Community (family.blog)
DOI: 10.25416/ntr.14156729
title: Writing Hacks

description: A blog discussing and offering tips for "writing for Fellowship". The blog can be accessed here Writing Hacks – NTU Fellowship Community (family.blog)
DOI: 10.17632/dbd3yh7kcc.1
title: AA Resilience

description: Supplementary files for "Association of Resilience and Perceived Stress in Patients with Alopecia Areata: A Cross Sectional Study"
DOI: 10.17632/6d8bp4jmwp.1
title: LDHU3_01.0030

description: Protein of unknown function (DUF2946); Leishmania donovani
DOI: 10.17632/thtndvvp9s.4
title: Miller_and_Charles_with_concepts_senses

description: This dataset represents the results of the experimentation of a method for evaluating semantic similarity between concepts in a taxonomy. The method is based on the information-theoretic approach and allows senses of concepts in a given context to be considered. The dataset is composed of 28 files. Each file refers to one pair of the well-known Miller and Charles benchmark dataset [1] for assessing semantic similarity. For each pair of concepts, the same 28 pairs are all considered as possible different contexts. We applied our proposal by extending 7 methods for computing semantic similarity in a taxonomy, selected from the literature. The methods considered in the experiment are referred to as (R[2], W&P[3], L[4], J&C[5], P&S[6], A[7], A&M[8]): REFERENCES [1] Miller, G.A., Charles, W.G. Contextual correlates of semantic similarity. Language and Cognitive Processes 6(1), 1-28 (1991) [2] Resnik, P. {\em Using Information Content to Evaluate Semantic Similarity in a Taxonomy}. In Proc. of the Int. Joint Conf. on Artificial Intelligence, Montreal, Quebec, Canada, August 20-25, Morgan Kaufmann, 448-453 (1995)]. [3] Wu, Z., Palmer, M. Verb semantics and lexical selection. In Proc. of the 32nd Annual Meeting of the Associations for Computational Linguistics, Las Cruces, New Mexico, 133-138 (1994). [4] Lin, D. An Information-Theoretic Definition of Similarity. In Proceedings of the Int. Conf. on Machine Learning, Madison, Wisconsin, USA. Morgan Kaufmann, 296-304 (1998). [5] Jiang, J.J., Conrath, D.W. Semantic Similarity Based on Corpus Statistics and Lexical Taxonomy. In Proc. of Inter. Conf. Research on Computational Linguistics (ROCLING X), Taiwan (1997). [6] Pirrò, G. A Semantic Similarity Metric Combining Features and Intrinsic Information Content. Data Knowl. Eng, 68(11), 1289-1308 (2009). [7] Adhikari, A., Dutta, B., Dutta, A., Mondal, D., Singh, S. An intrinsic information content-based semantic similarity measure considering the disjoint common subsumers of concepts of an ontology. J. Assoc. Inf. Sci. Technol. 69(8), 1023-1034 (2018). [8] Adhikari, A., Singh, S., Mondal, D., Dutta, B., Dutta, A. A Novel Information Theoretic Framework for Finding Semantic Similarity in WordNet. CoRR, arXiv:1607.05422, abs/1607.05422 (2016). Finally, in each file, the correlation of our proposal with respect to human judgement is reported.
DOI: 10.17632/g295ksy3dv.1
title: Investor Attention and Stock Market Performance

description: This data is strictly related to the Ghanaian economy from September 2005 to December 2020. Monthly data on Inflation, Monetary aggregates (M1 and M2), monthly nominal growth in GDP, the monthly all shares composite index of the Ghana stock exchange and Google search volume. The data on Inflation, Monetary aggregates (M1 and M2) and monthly nominal growth in GDP were obtained from the official web page of the central bank of Ghana. The data on google search volume was also extracted from google trend on searches related to the Ghana stock exchange and listed companies. Main hypothesis and findings: This study examines the effect of active investor attention (Google Search Volume) and inflation on the stock market returns in Ghana for the period September 2005 - December 2019 (monthly data). Through cointegration and the VECM technique we established long run relationship among the variables. We also found positive and significant relationship between active investor attention (Google Search Volume), inflation, and equity returns in Ghana. The results from the VECM is further confirmed by ARCH and GARCH models as robustness check. Our findings confirm that in Ghana, equity serves as a hedge against inflation.
DOI: 10.17632/ydws9gnm46.1
title: Roe deer competition dataset

description: This dataset consists of roe deer cull data from 2011 to 2017. Each row represents one individual adult female roe deer for which number of embryos (column "embryo"), body mass (column "weight") cull year ("Cull_Year") , forest block ("Block") and week during which it was culled are reported ("Week_bodymass" continuous variable indicating number of weeks after the start of the year the animal was culled, used when analysing body mass; "Week", coded as 0-1 to identify wether the animal was culled within the first 3 weeks since the start of the year or after, to be used for fertility analysis). A series of columns in the dataset indicate the percentage of arable land extracted from a buffer built around cull locations with buffer radii ranging from 300m to 600m (at 50m step increment). These columns are named "Arable_" plus the buffer radius. Similarly, columns indicating density of fallow deer extracted around cull locations (300-600m buffer radius at 50m steps increments) are labelled "Fw_" plus the buffer radius. Deer densities were extracted from density surface raster predictions. Columns similarly named but with cv added to the name ("Fw_cv_") plus the buffer radius indicate the average coefficient of variation associated with the deer density extracted. The same naming style to the one used to extract fallow deer densities has been used to indicate roe deer and muntjac densities where those columns referring to muntjac densities are named "Mj_" plus buffer size and those referring to roe deer densities are named "Roe_" plus buffer size.
DOI: 10.17632/29xvjgktvj.1
title: Data for: Analyzing the Influence of Measurements in Dynamical Parameter Identification Using Parametric Sensitivities

description: We provide the data used in the "Proof of Concept", including details of the added noise, and necessary information to reproduce the results.