cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5545087
title: Supplementary Material for: A Genome-Wide Search for Bipolar Disorder Risk Loci Modified by Mitochondrial Genome Variation

description: Mitochondrial DNA mutations have been reported to be associated with bipolar disorder (BD). In this study, we performed genome-wide analyses to assess mitochondrial single-nucleotide polymorphism (mtSNP) effects on BD risk and early-onset BD (EOBD) among BD patients, focusing on interaction effects between nuclear SNPs (nSNPs) and mtSNPs. Common nSNP and mtSNP data from European American BD cases (<i>n</i> = 1,001) and controls (<i>n</i> = 1,034) from the Genetic Association Information Network BD study were analyzed to assess the joint effect of nSNP and nSNP-mtSNP interaction on the risk of BD and EOBD. The effect of nSNP-mtSNP interactions was also assessed. For BD risk, the strongest evidence of an association was obtained for nSNP rs1880924 in <i>MGAM</i> and mtSNP rs3088309 in <i>CytB</i> (<i>p</i><sub>joint</sub> = 8.2 × 10<sup>-8</sup>, <i>p</i><sub>int</sub> = 1.4 × 10<sup>-4</sup>). Our results also suggest that the minor allele of the nSNP rs583990 in <i>CTNNA2</i> increases the risk of EOBD among carriers of the mtSNP rs3088309 minor allele, while the nSNP has no effect among those carrying the mtSNP major allele (OR = 4.53 vs. 1.05, <i>p</i><sub>joint</sub> = 2.1 × 10<sup>-7</sup>, <i>p</i><sub>int</sub> = 1.16 × 10<sup>-6</sup>). While our results are not statistically significant after multiple testing correction and a large-sample replication is required, our exploratory study demonstrates the potential importance of considering the mitochondrial genome for identifying genetic factors associated with BD.
DOI: 10.6084/m9.figshare.5545159.v2
title: Evidence from Australian mesic zone dung beetles supports their Gondwanan origin and Mesozoic diversification of the Scarabaeinae. Supplemental Material

description: The evolution of dung beetles remains contentious with two hypotheses reflecting Cretaceous and Paleo­gene origins driven by different methods. We explore biogeographic evidence and phylogeographic origins against vicariance and dispersal scenarios that attribute to the four elements of the Australian fauna using a multi-gene approach. Maximum-likelihood and Bayesian analyses supported the Australasian clade, com­posed of almost all Australian, New Caledonian and New Zealand endemic genera (to the exclusion of <i>Bo­letoscapter</i>). Two Australian lineages with east-west splits and few lineages with restricted, non-overlapping distrbution were identified, and biogeography models provided evidence that vicariance and founder event speciation are important processes in the diversification of Australasian scarabaeines. Our phylogenetic results are largely congruent with a mid-Cretaceous origin of the Australasian clade, the tectonic history of Gondwanaland and climatic history of the Australian continent, and provide compelling evidence that Australian dung beetles are a relictual fauna whose history is linked to mesic zone fragmentation.
DOI: 10.6084/m9.figshare.5545159.v1
title: Evidence from Australian mesic zone dung beetles supports their Gondwanan origin and Mesozoic diversification of the Scarabaeinae. Supplemental Material

description: The evolution of dung beetles remains contentious with two hypotheses reflecting Cretaceous and Paleo­gene origins driven by different methods. We explore biogeographic evidence and phylogeographic origins against vicariance and dispersal scenarios that attribute to the four elements of the Australian fauna using a multi-gene approach. Maximum-likelihood and Bayesian analyses supported the Australasian clade, com­posed of almost all Australian, New Caledonian and New Zealand endemic genera (to the exclusion of <i>Bo­letoscapter</i>). Two Australian lineages with east-west splits and few lineages with restricted, non-overlapping distrbution were identified, and biogeography models provided evidence that vicariance and founder event speciation are important processes in the diversification of Australasian scarabaeines. Our phylogenetic results are largely congruent with a mid-Cretaceous origin of the Australasian clade, the tectonic history of Gondwanaland and climatic history of the Australian continent, and provide compelling evidence that Australian dung beetles are a relictual fauna whose history is linked to mesic zone fragmentation.
DOI: 10.6084/m9.figshare.5545084
title: haplotype_analysis_database.zip

description: A MySQL dump of a database of transcript and protein haplotypes generated by combining the Ensembl 83 (GRCh37) gene set with 1000 Genomes phase 3 phased genotype data.
DOI: 10.6084/m9.figshare.5545069
title: Foam Core Study Data

description: Data obtained from the ABAQUS model when comparing changes in the foam core dimensions of the FRP sandwich panel.
DOI: 10.6084/m9.figshare.5545072
title: Comparison of failure models

description: Data set that compares the outcomes of the simulations run under the two failure models in question. The Hashin failure criteria and the Xin & Wen model.
DOI: 10.6084/m9.figshare.5545066
title: VUMAT Subroutine Raw Data

description: Set of raw data obtained from the implementation of the advanced failure model through a VUMAT subroutine.
DOI: 10.6084/m9.figshare.5545057
title: Initial Parametric Study Data

description: Spreadsheet of data used to obtain the initial parametric study data. This involves the analysis of material configurations and physical face sheet dimensions of the sandwich panel.
DOI: 10.6084/m9.figshare.5545072.v1
title: Comparison of failure models

description: Data set that compares the outcomes of the simulations run under the two failure models in question. The Hashin failure criteria and the Xin & Wen model.
DOI: 10.6084/m9.figshare.5545066.v1
title: VUMAT Subroutine Raw Data

description: Set of raw data obtained from the implementation of the advanced failure model through a VUMAT subroutine.
DOI: 10.6084/m9.figshare.5545135.v2
title: temp.RData

description: temp file
DOI: 10.6084/m9.figshare.5545012
title: Transcranial alternating current stimulation modulates auditory temporal resolution in elderly people

description: Preprocessed data:<br>column #1: subject ID<br>column #2: individual gamma frequency (IGF)<br>column #3: gap detection thresholds (ms) at baseline<br>column #4: change of gap detection performance (%-100) during tACS above IGF<br>column #5: change of gap detection performance (%-100) during tACS below IGF
DOI: 10.25375/uct.5545006
title: Data collected for Conference Presentation: Preparing UCT Libraries for Research Data Services

description: This dataset contains the original questionnaire and responses that were used to inform the presentation, Preparing UCT Libraries for Research Data Services (RDS), presented at the 18th Annual LIASA Conference on 5 October, 2017.<br>The questionnaire was distributed to UCT Libraries' staff in September 2017. Participation was voluntary and anonymous. We received 23 responses from about 120 staff, so the data does not represent the entirety of UCT Libraries' staff attitudes, but is valuable as a starting point in analysing staff attitudes and willingness towards RDS at UCT Libraries.
DOI: 10.6084/m9.figshare.5545012.v1
title: Data_Baltusetal2017.txt

description: Preprocessed data:<br>column #1: subject ID<br>column #2: individual gamma frequency (IGF)<br>column #3: gap detection thresholds (ms) at baseline<br>column #4: change of gap detection performance (%-100) during tACS above IGF<br>column #5: change of gap detection performance (%-100) during tACS below IGF
DOI: 10.6084/m9.figshare.5544883
title: An examination of the internal consistency and structure of the Statistical Anxiety Rating Scale (STARS)

description: Participants: 202 (79% females) psychology undergraduates.<br>Demographic variables: Age, Gender (0 = Male, 1 = Female), Campus (0 = Australia, 1 = Singapore).<br>Instruments: Statistical Anxiety Rating Scale, Statistical Anxiety Scale, and the Attitudes toward Statistics Scale.
DOI: 10.6084/m9.figshare.5544883.v1
title: An examination of the internal consistency and structure of the Statistical Anxiety Rating Scale (STARS)

description: Participants: 202 (79% females) psychology undergraduates.<br>Demographic variables: Age, gender, campus (Singapore vs. Australia).<br>Instruments: Statistical Anxiety Rating Scale, Statistical Anxiety Scale, and the Attitudes toward Statistics Scale.
DOI: 10.6084/m9.figshare.5544841
title: Date of thunder and lightning events in Kyoto, Japan

description: Date of thunder and lightning events obtained from<br>diaries kept by Tsuneko Konoe (parts of AD1668–1694), the Myoho-in Temple (parts of AD1695–1767), the Nijo family (parts of AD1728–1730), and the Chion-in Temple (parts of AD1731–1767). The reliability of the daily weather descriptions from AD1679–1697 was confirmed by consulting the diary of Kaneteru Ichijo.<br><br>Reference：Hiroko Miyahara, Yasuyuki Aono, and Ryuho Kataoka, Searching for the 27-day solar rotational cycle in lightning events recorded in old diaries in Kyoto from the 17th to 18th century, Ann.<br>Geophys., 2017.<br>
DOI: 10.6084/m9.figshare.5544607
title: The usefulness of a single arm cuff oscillometric method (Arteriograph) to assess changes in central aortic blood pressure and arterial stiffness by antihypertensive treatment: results from the Doxazosin-Ramipril Study

description: <b>Purpose:</b> Inhibition of the renin-angiotensin system may have effects on vascular structure and function beyond the effects on blood pressure (BP) reduction. We studied the ability of a single arm cuff oscillometric method (Arteriograph, TensioMed, Hungary) to assess effects of antihypertensive treatment on BP and arterial stiffness. Furthermore, this technique was compared to pulse wave analysis and applanation tonometry (SphygmoCor, AtCor Medical, Australia). <b>Materials and methods:</b> Brachial and aortic BP, augmentation index (AIx), and carotid-femoral pulse wave velocity (PWV) was simultaneously assessed by both techniques in 71 untreated hypertensive patients. Thereafter, 58 completed double-blind randomized treatment for 12 weeks with ramipril or doxazosin. <b>Results:</b> Treatment (assessed by the Arteriograph) reduced aortic more than brachial systolic BP (−13.2 <i>vs</i>. −11.2 mm Hg; <i>p</i> = .002) and improved all indices of arterial stiffness. This greater reduction in aortic to brachial systolic BP was more marked by ramipril than by doxazosin (−20.9 and −17.1 <i>vs.</i> −4.3 and −4.2 mm Hg; <i>p</i> = .006), with a similar trend for AIx (−6.2 <i>vs</i>. −2.2%; <i>p</i> = .058). Both devices showed correlations for aortic and brachial systolic and diastolic BP and AIx (r = 0.75–0.86, all <i>p</i> p = .043). The Arteriograph generally recorded higher values for aortic BP and AIx than the SphygmoCor. <b>Conclusions:</b> Antihypertensive treatment reduced aortic systolic BP more than brachial BP and improved arterial stiffness. Blocking the renin-angiotensin system may have additional effects beyond BP reduction. We demonstrate the feasibility of the Arteriograph to monitor changes in BP and arterial stiffness by treatment.
DOI: 10.6084/m9.figshare.5544595
title: followme_training_set

description: as title
DOI: 10.6084/m9.figshare.5544607.v1
title: The usefulness of a single arm cuff oscillometric method (Arteriograph) to assess changes in central aortic blood pressure and arterial stiffness by antihypertensive treatment: results from the Doxazosin-Ramipril Study

description: <b>Purpose:</b> Inhibition of the renin-angiotensin system may have effects on vascular structure and function beyond the effects on blood pressure (BP) reduction. We studied the ability of a single arm cuff oscillometric method (Arteriograph, TensioMed, Hungary) to assess effects of antihypertensive treatment on BP and arterial stiffness. Furthermore, this technique was compared to pulse wave analysis and applanation tonometry (SphygmoCor, AtCor Medical, Australia). <b>Materials and methods:</b> Brachial and aortic BP, augmentation index (AIx), and carotid-femoral pulse wave velocity (PWV) was simultaneously assessed by both techniques in 71 untreated hypertensive patients. Thereafter, 58 completed double-blind randomized treatment for 12 weeks with ramipril or doxazosin. <b>Results:</b> Treatment (assessed by the Arteriograph) reduced aortic more than brachial systolic BP (−13.2 <i>vs</i>. −11.2 mm Hg; <i>p</i> = .002) and improved all indices of arterial stiffness. This greater reduction in aortic to brachial systolic BP was more marked by ramipril than by doxazosin (−20.9 and −17.1 <i>vs.</i> −4.3 and −4.2 mm Hg; <i>p</i> = .006), with a similar trend for AIx (−6.2 <i>vs</i>. −2.2%; <i>p</i> = .058). Both devices showed correlations for aortic and brachial systolic and diastolic BP and AIx (r = 0.75–0.86, all <i>p</i> p = .043). The Arteriograph generally recorded higher values for aortic BP and AIx than the SphygmoCor. <b>Conclusions:</b> Antihypertensive treatment reduced aortic systolic BP more than brachial BP and improved arterial stiffness. Blocking the renin-angiotensin system may have additional effects beyond BP reduction. We demonstrate the feasibility of the Arteriograph to monitor changes in BP and arterial stiffness by treatment.
DOI: 10.6084/m9.figshare.5544592
title: Clinical epidemiology and outcomes of community acquired infection and sepsis among hospitalized patients in a resource limited setting in Northeast Thailand: A prospective observational study (Ubon-Sepsis)

description: This is a part of prospective observational (non-interventional) study of community-acquired sepsis and severe sepsis in Sunpasithiprasong Hospital, Ubon Ratchathani province, northeast Thailand (NCT02217592). We prospectively enrolled adult patients (age≥18 years) who were admitted with a primary diagnosis of suspected or documented infection made by the attending physician, were within 24 hours of hospital admission, and had at least three sepsis diagnostic criteria documented in the medical record.<br><br>The manuscript reports clinical epidemiology and outcomes of patients presenting with sepsis in Northeast, Thailand. <br><br>The data comprises of demographic, clinical information and 28-day mortality of 4,989 patients at Sunpasitthiprasong Hospital, Ubon Ratchathani province, Thailand. There are two files, the data and the data descriptions.
DOI: 10.6084/m9.figshare.5544595.v1
title: followme_training_set

description: as title
DOI: 10.6084/m9.figshare.5544592.v1
title: Data Set - Sepsis, clinical epidemiology and outcomes of community acquired infections in a resource limited setting in South-East Asia: A prospective observational study (Ubon-sepsis)

description: This is a part of prospective observational (non-interventional) study of community-acquired sepsis and severe sepsis in Sunpasithiprasong Hospital, Ubon Ratchathani province, northeast Thailand (NCT02217592). We prospectively enrolled adult patients (age≥18 years) who were admitted with a primary diagnosis of suspected or documented infection made by the attending physician, were within 24 hours of hospital admission, and had at least three sepsis diagnostic criteria documented in the medical record.<br><br>The manuscript reports clinical epidemiology and outcomes of patients presenting with sepsis in Northeast, Thailand. <br><br>The data comprises of demographic, clinical information and 28-day mortality of 4,989 patients at Sunpasitthiprasong Hospital, Ubon Ratchathani province, Thailand. There are two files, the data and the data descriptions.
DOI: 10.6084/m9.figshare.5544592.v2
title: Clinical epidemiology and outcomes of community acquired infection and sepsis among hospitalized patients in a resource limited setting in Northeast Thailand: A prospective observational study (Ubon-Sepsis)

description: This is a part of prospective observational (non-interventional) study of community-acquired sepsis and severe sepsis in Sunpasithiprasong Hospital, Ubon Ratchathani province, northeast Thailand (NCT02217592). We prospectively enrolled adult patients (age≥18 years) who were admitted with a primary diagnosis of suspected or documented infection made by the attending physician, were within 24 hours of hospital admission, and had at least three sepsis diagnostic criteria documented in the medical record.<br><br>The manuscript reports clinical epidemiology and outcomes of patients presenting with sepsis in Northeast, Thailand. <br><br>The data comprises of demographic, clinical information and 28-day mortality of 4,989 patients at Sunpasitthiprasong Hospital, Ubon Ratchathani province, Thailand. There are two files, the data and the data descriptions.
DOI: 10.6084/m9.figshare.5544535
title: Indicadores Sociales y Electorales en el Estado de México, México

description: This data set contain local information (municipalities level) about public budget, human development, transparency, illiteracy and votes for party at Estado de Mexico, in 2017 government elections.
DOI: 10.6084/m9.figshare.5544535.v1
title: Indicadores Sociales y Electorales en el Estado de México, México

description: This data set contain local information (municipalities level) about public budget, human development, transparency, illiteracy and votes for party at Estado de Mexico, in 2017 government elections.
DOI: 10.6084/m9.figshare.5544511
title: Gender by remoteness.csv

description: Coding data put forward in article: http://www.abc.net.au/triplej/programs/hack/welcome-to-the-town-with-no-single-women/9092386.<br><br>Note: 32 postal codes were listed for 'more single men' and 30 were listed for 'more single women'. One postal code for 'more single women' was labelled in the article as 'null' and could not be matched to a Australian remoteness category (ARIA) nor socioeconomic index for areas (SEIFA). It looks like a remote area of Queensland to me: http://australia.postcode.info/p/4892<br><br>Comments in FB feed were based on a raw proportion of areas listed as 'Major cities' for the first 29 areas which could be assigned a valid remoteness category. Two additional areas were listed as 'major cities/inner regional' areas for men and were not counted as major cities. A priori 4 lyf. <br><br>Variables in dataset<br>Postalcode: post code for location - used to merge data for ARIA and SEIFA indices.<br>Remoteness: Australian Remoteness Index of Australia (ARIA) by postal code as extracted from http://www.pocog.org.au/aria/default.aspx<br>Gender: f = more single women; m = more single men<br>SEIFA: Socio-economic Indexes for Areas (SEIFA) as extracted from http://stat.data.abs.gov.au/Index.aspx?DataSetCode=SEIFA_POA<br>
DOI: 10.6084/m9.figshare.5544511.v1
title: Gender by remoteness.csv

description: Coding data put forward in article: http://www.abc.net.au/triplej/programs/hack/welcome-to-the-town-with-no-single-women/9092386.<br><br>Note: 32 postal codes were listed for 'more single men' and 30 were listed for 'more single women'. One postal code for 'more single women' was labelled in the article as 'null' and could not be matched to a Australian remoteness category (ARIA) nor socioeconomic index for areas (SEIFA). It looks like a remote area of Queensland to me: http://australia.postcode.info/p/4892<br><br>Comments in FB feed were based on a raw proportion of areas listed as 'Major cities' for the first 29 areas which could be assigned a valid remoteness category. Two additional areas were listed as 'major cities/inner regional' areas for men and were not counted as major cities. A priori 4 lyf. <br><br>Variables in dataset<br>Postalcode: post code for location - used to merge data for ARIA and SEIFA indices.<br>Remoteness: Australian Remoteness Index of Australia (ARIA) by postal code as extracted from http://www.pocog.org.au/aria/default.aspx<br>Gender: f = more single women; m = more single men<br>SEIFA: Socio-economic Indexes for Areas (SEIFA) as extracted from http://stat.data.abs.gov.au/Index.aspx?DataSetCode=SEIFA_POA<br>
DOI: 10.6084/m9.figshare.5544505
title: Dataset for: CHLORIDE INTRACELLULAR CHANNEL 1 (CLIC1) CONTRIBUTES TO MODULATION OF CYCLIC AMP-ACTIVATED WHOLE CELL CHLORIDE CURRENTS IN HUMAN BRONCHIAL EPITHELIAL CELLS

description: Chloride channels are known to play critical physiological roles in many cell types. Here we describe the expression of anion channels using RNA Seq in primary cultures of human Bronchial Epithelial Cells (hBECs). Chloride intracellular channel (CLIC) family members were the most abundant chloride channel transcripts, and CLIC1 showed the highest level of expression. In addition, we characterise the chloride currents in hBECs and determine how inhibition of CLIC1 via pharmacological and molecular approaches impacts these. We demonstrate that CLIC1 is able to modulate cyclic AMP-induced chloride currents and suggest that CLIC1 modulation could be important for chloride homeostasis in this cell type.
DOI: 10.6084/m9.figshare.5544505.v1
title: Dataset for: CHLORIDE INTRACELLULAR CHANNEL 1 (CLIC1) CONTRIBUTES TO MODULATION OF CYCLIC AMP-ACTIVATED WHOLE CELL CHLORIDE CURRENTS IN HUMAN BRONCHIAL EPITHELIAL CELLS

description: Chloride channels are known to play critical physiological roles in many cell types. Here we describe the expression of anion channels using RNA Seq in primary cultures of human Bronchial Epithelial Cells (hBECs). Chloride intracellular channel (CLIC) family members were the most abundant chloride channel transcripts, and CLIC1 showed the highest level of expression. In addition, we characterise the chloride currents in hBECs and determine how inhibition of CLIC1 via pharmacological and molecular approaches impacts these. We demonstrate that CLIC1 is able to modulate cyclic AMP-induced chloride currents and suggest that CLIC1 modulation could be important for chloride homeostasis in this cell type.
DOI: 10.6084/m9.figshare.5544484
title: Tajima'D.pl

description: The perl script is used to calculate the Tajima'D for given population.
DOI: 10.6084/m9.figshare.5544484.v1
title: Tajima'D.pl

description: The perl script is used to calculate the Tajima'D for given population.
DOI: 10.6084/m9.figshare.5544466
title: metabolism.csv

description: SMR, MMR and weights for mudfish and kokopu in units described in-text.
DOI: 10.6084/m9.figshare.5544478
title: populations.csv

description: Average SMR and weight of fish in each population and total population metabolic rate using unit as described in-text.
DOI: 10.6084/m9.figshare.5544478.v1
title: populations.csv

description: Average SMR and weight of fish in each population and total population metabolic rate using unit as described in-text.
DOI: 10.6084/m9.figshare.5544466.v1
title: metabolism.csv

description: SMR, MMR and weights for mudfish and kokopu in units described in-text.
DOI: 10.6084/m9.figshare.5544445
title: Dataset for: Estimation and inference in spatially varying coefficient models

description: Spatially varying coefficient models (SVCMs) are a classical tool to explore the spatial nonstationarity of a regression relationship for spatial data. In this paper, we study the estimation and inference in SVCMs for data distributed over complex domains. We use bivariate splines over triangulations to represent the coefficient functions. The estimators of the coefficient functions are consistent, and rates of convergence of the proposed estimators are established. A penalized bivariate spline estimation method is also introduced, in which a roughness penalty is incorporated to balance the goodness-of-fit and smoothness. In addition, we propose hypothesis tests to examine if the coefficient function is really varying over space or admits a certain parametric form. The proposed method is much more computationally efficient than the well-known geographically weighted regression technique and thus usable for analyzing massive datasets. The performance of the estimators and the proposed tests are evaluated by simulation experiments. An environmental data example is used to illustrate the application of the proposed method.