cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28824032.v1
title: The 16S rRNA sequencing raw data for the study titled Effects of high-dose glucocorticoids on gut microbiota in the treatment of Graves' ophthalmopathy

description: <b>Background</b> Many studies indicate the gut microbiome is associated with diseases caused by administering high-dose glucocorticoids (GCs), such as hypertension, hyperglycemia and osteoporosis. However, the association between intestinal flora and the use of high-dose GCs remains elusive. We aimed to characterize gut microbiome in Graves' ophthalmopathy (GO) patients after administering high-dose GCs. <b>Methods</b> In this study, 20 primary GO patients were recruited. The differences in gut microbiota of GO patients before and after administering high-dose GCs were analyzed by 16S rDNA sequencing technology. Untargeted metabolomic analysis was used to examine the differences in gut metabolites between two groups.<b>Results</b> There were significant differences in α and β diversities of gut microbiota in GO patients before and after administering high-dose GCs. The random forest analysis indicated that three intestinal bacteria (Faecalibacterium, Streptococcus, and Prevotella) could distinguish the two groups with the highest accuracy, which was proved by receiver operator characteristic curve and linear discriminant analysis effect size analysis. The short chain fatty acids (SCFAs)-producing ability in GO patients’ gut after high-dose GCs administration was significantly decreased. The 5-hydroxytryptamine (5-HT) levels significantly increased in gut of GO patients after administering high-dose GCs. <b>Conclusions</b> Our study suggests that high-dose GCs administration causes the changes in gut microbiome and metabolites. Moreover, the altered flora and metabolites are related to hypertension, hyperglycemia and osteoporosis. These findings can help understand the development of side effects caused by high-dose GCs and can be further used to develop potential probiotics to facilitate the prevention for those side effects. <br>
DOI: 10.6084/m9.figshare.3551181.v1
title: Appendix B. Correlation matrix for 8 plant traits.

description: Correlation matrix for 8 plant traits.
DOI: 10.6084/m9.figshare.5125348.v1
title: Supplementary Material for: Family History: Impact on Coronary Heart Disease Risk Assessment beyond Guideline-Defined Factors

description: <b><i>Objective:</i></b> Family history (FH) provides insights into the effects of shared genomic susceptibilities, environments and behaviors, making it a potentially valuable risk assessment tool for chronic diseases. We assessed whether coronary heart disease (CHD) risk assessment is improved when FH information is added to other clinical information recommended in guidelines. <b><i>Methods:</i></b> We applied logistic regression analyses to cross-sectional data originally obtained from a UK study of women who delivered a live-born infant between 1951 and 1970. We developed 3 models: Model 1 included only the covariates in a guideline applicable to the population, Model 2 added FH to Model 1, and Model 3 included a fuller range of risk factors. For each model, its ability to discriminate between study subjects with and those without CHD was evaluated and its impact on risk classification examined using the net reclassification index. <b><i>Results:</i></b> FH was an independent risk factor for CHD (odds ratio = 1.7, 95% confidence interval = 1.26-2.47) and improved discrimination beyond guideline-defined clinical factors (p &lt; 0.0006). However, the difference in the area under the curve of 2.8% and the extent of patient reclassification resulting from the inclusion of FH were small (p = 0.11). <b><i>Conclusion:</i></b> While FH were a significant independent risk factor for CHD, it added little to risk factors typically included in guidelines.
DOI: 10.17632/v7wy5wwc8c
title: Amplicon capture phylogenomics provides new insights into the phylogeny and evolution of alpine Parnassius butterflies (Lepidoptera: Papilionidae)

description: Appendixes to the paper ;  compressed files ;  rar files
DOI: 10.17632/zmxyp5cbpk
title: Prioritizing the performance outcomes due to adoption of critical success factors of Industry 5.0 enabled circular supply chain

description: The data file is available as an appendix
DOI: 10.6084/m9.figshare.21331284.v1
title: Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in early-stage lung adenocarcinoma

description: Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in early-stage lung adenocarcinoma <br>
DOI: 10.6084/m9.figshare.25838197.v1
title: Leao et al., 2024 - Supplementary Data

description: Supplementary information of paper <b>"Asgard archaea defense systems and their roles in the origin of eukaryotic immunity"</b> by Pedro Leão, Mary E. Little, Kathryn E. Appler, Daphne Sahaya, Emily Aguilar-Pine, Kathryn Currie, Ilya J. Finkelstein, Valerie De Anda and Brett J. BakerSupplementary Data 1 - DefenseFinder output, and descriptive statistics of each dataset analyzed in Leão et al., 2024Supplementary Data 2 - Information regarding the asVip expression experiment presented in Leão et al., 2024Supplementary Data 3 - General information and alignments of the protein structures used in Leão et al., 2024Supplementary Data 4 - Mapping files of the phylogenetic trees presented in Leão et al., 2024Supplementary Data 5 - Sequence and structural alignments used to generate the data presented in Leão et al., 2024Supplementary Information - Phylogenetic analyses of Argonaute, NLR and Mokosh defence systems proteins across the tree of lifeAlignments - Alignments used to generate the phylogenetic trees presented in this manuscriptPublication license for figure 4 in this manuscript.
DOI: 10.6084/m9.figshare.5217373.v1
title: NSF Graduate Research Fellowship Proposal (2015)

description: NSF GRFP application submitted Fall of 2015. Successful.
DOI: 10.6084/m9.figshare.833883.v1
title: SG hybrid trace of CG class B with 8 processors for Graphene

description: This is a SimGrid trace of the NASPB CG benchmark on a model of graphene using the Hybrid SMPI model. The trace was obtained by Georges Markomanolis using SimGrid 3.10.0.
DOI: 10.17632/9tfyr3fppy
title: Data for: Data Set on the Measurement of Power Produced by Different Hybrid Vertical Axis Wind Turbines under Natural Wind Conditions

description: The system consists of 4 numbers of Wind Turbine Generators rated for 1 kW. Initially instrumentation of 2 numbers of 300 W machines has been carried out on 11.07.2018. The data has been collected during the period from 11th July to 28th September 2018(Time stamp: 11-07-2018 15:40 to 28-09-2018 23:59).Total number of data collected as 112461 data sets. In Phase 2, instrumentation of 2 numbers of 200 W has been instrumented on 29.09.2018. The data has been collected during the period from 29th September 2018 to 24th October 2018(Time stamp: 29-09-2018 00:01 to 24-10-2018 09:00).Total number of data collected as 36541 data sets.
DOI: 10.17632/rnsjpc7nfp
title: Holstein Semen Allocation Supplementary

description: Semen allocation in Holstein females in the United States from 2019 to 2021
DOI: 10.17632/rw6xkt6gpw
title: Orthoimage data_JSSE

description: Orthoimage data_JSSE
DOI: 10.17632/6mhzgnf6fz
title: Figure 4. Hourly distribution of DHW demand as a fraction of the total daily demand.

description: This table gives the hourly distribution of domestic hot water (DHW) volume demand as a fraction of the total daily demand for Spanish residential houses and was applied in the analysis of the study. This was reproduced from the original publications by: Ministerio de Transportes, Movilidad y Agenda Urbana, Spain, Documento Básico HE – Ahorro de energía, 2022. https://www.codigotecnico.org/pdf/Documentos/HE/DcmHE.pdf
DOI: 10.6084/m9.figshare.25422697.v1
title: <b>Monitoring and evaluation of the effects of Grain for Green Project on the Loess Plateau: A case study of Wuqi County in China</b>

description: The Loess Plateau plays a significant role in the implementation of China's Grain for Green Project due to severe ecological damage in the region. In order to monitor and evaluate the effects of Grain for Green Project, a study was conducted in Wuqi County, which is representative of the Loess Plateau. The study utilized remote sensing (RS) and geographic information system (GIS) technologies to analyze the spatial and temporal patterns of Grain for Green Project and assess its effects. The findings indicate that the Grain for Green Project resulted in notable improvements in Wuqi County from 2000 to 2018. Firstly, there was a significant increase in vegetation coverage, accompanied by a reduction in soil erosion intensity. Secondly, approximately 64% of cropland was converted, leading to an expansion of forest and grassland areas. Thirdly, the focus of vegetation restoration was primarily on converting cropland to grassland, indicating its suitability for the county compared to forestation. Lastly, the conversion of steep cropland (&gt;25°) was influenced by the density of less steep cropland (&lt;25°). This study emphasizes the importance of guiding farmers in selecting appropriate vegetation restoration strategies and finding a balance between erosion control and agricultural production within the Grain for Green Project. Furthermore, the study recognizes that the project's significant effects are not solely attributed to land use conversion but also to the self-restoration of vegetation. This shift towards a self-restoration perspective is crucial for the future high-quality development of the Grain for Green Project.
DOI: 10.6084/m9.figshare.26188793.v1
title: <b>Land Cover and Drought Risk Assessment in Türkiye's Mountain Regions Using Neutrosophic Decision Support System</b>

description: <b>Land Cover and Drought Risk Assessment in Türkiye's Mountain Regions Using Neutrosophic Decision Support System</b>
DOI: 10.17632/v4g8n4kb9b
title: Fortran Codes for Cozzi, M., Public Debt and Welfare in a Quantitative Schumpeterian Growth Model with Incomplete Markets, Journal of Macroeconomics, 2023.

description: The folders include the Fortran90 Codes to solve the steady-states and transitions for the models in the paper "Public Debt and Welfare in a Quantitative Schumpeterian Growth Model with Incomplete Markets," forthcoming in the Journal of Macroeconomics.
The folder "EGT_RandD" includes the files to solve the steady-states. The folder "EGT_RandD_TR" includes the files to solve the transitions. The folders with the "Income_MChain_RandD" in their names solve the alternative versions of the model with the "superstar" income shocks.
DOI: 10.6084/m9.figshare.14673189.v1
title: S18_Data.csv.zip

description: <b>S18 Data. Conjugative systems MPF distribution. </b>The number (n) of conjugative systems belonging to each MPF type (Predicted_system), per strain of the genomic dataset (strain). The prediction chromosome/plasmid (Prediction) is annotated. This data is represented on S7 Fig.
DOI: 10.6084/m9.figshare.27936111.v1
title: Axolotl data for distance and home range analyses

description: Movement ecology of captive-bred axolotls in restored and artificial wetlands
DOI: 10.6084/m9.figshare.28141703.v1
title: fNIRS Data for Different Rivalry Color Pairs

description: This dataset comprises preprocessed functional Near-Infrared Spectroscopy (fNIRS) measurements, detailing changes in blood oxygen saturation levels in response to four stimuli of binocular color rivalry among 16 participants. The color contrasts include Red-Green (R-G), Yellow-Blue (Y-B), Red-Yellow versus Green-Blue (RY-GB), and Red-Green versus Yellow-Blue (RG-YB). Utilizing multiple source-detector pairs distributed across the scalp (e.g., S4-D2, S5-D3), we capture dynamic changes in hemoglobin concentration within cortical regions of the brain, reflecting immediate responses to visual stimuli.Each record represents an observation at a specific time point, encompassing channel numbers, source-detector pair identifiers, and two key metrics: Mean Hemoglobin Oxygenation (Mean-HbO) and Difference in Hemoglobin Oxygenation (Difference-HbO). The Mean-HbO indicates changes in hemoglobin concentration relative to baseline levels, whereas Difference-HbO denotes relative variations compared to a reference condition. This design facilitates in-depth analysis of brain response patterns to varying color stimuli and exploration of both inter-individual and intra-individual changes over time.<br>All data have undergone a series of preprocessing steps aimed at optimizing signal quality and minimizing noise interference, ensuring the accuracy of the analytical outcomes. Consequently, this dataset provides a robust foundation for investigating activity patterns in the brain during visual stimulation, particularly in color recognition tasks. It not only aids in understanding color preference and its underlying neural mechanisms but also validates fNIRS as an effective tool for cognitive science research.The dataset thus serves as a valuable resource for researchers seeking to explore how different colors influence brain activity and offers insights into the neurophysiological basis of visual processing.
DOI: 10.6084/m9.figshare.28804013.v1
title: Supplementary Materials.docx

description: <b><i>Supplementary Figure S1. Analysis of burst characteristics using the Stockwell transform and a reduced simulation. </i></b><i>Rows 1–3 illustrate transient event simulations at low, mid, and high burst probability levels, whereas Rows 4–5 display sustained event simulations at low and high probabilities, respectively. In these simulations, transient bursts are modeled as brief events (0.03–0.4 s) and sustained events range from 0.5 to 0.8 s. The first six columns characterize the detected bursts: Column 1 shows the correlation across thresholds (peaking near 6 FOM), Columns 2–4 present the distributions for burst power, frequency span, and duration (with dashed lines indicating the medians), Column 5 reports the trial count, and Column 6 displays the maximum burst-related potentials (BURPS). Columns 7 and 8 pertain to the simulated signal—with Column 7 depicting the intended trial count distribution (with event probability indicated in the top right corner) and Column 8 showing the average power spectral density. Despite employing the Stockwell transform in this reduced simulation, the results indicate that sustained oscillations can still appear as bursts, suggesting that the artifactual detection of bursts is not solely attributable to the use of Morlet wavelet convolution.</i>
DOI: 10.7294/16624648.v1
title: Structural Material Semantic Segmentation Dataset

description: <p>The material segmentation dataset comprises 3817 images
gathered from the Virginia Department of Transportation (VDOT) Bridge
Inspection Reports. There were four classes of material in the dataset:
[concrete, steel, metal decking, and background]. The data was randomly sorted
into training and testing using a custom script. 10% percent were reserved as
the test set, and 90% were used as the training set. Therefore, there were 381
images in the test set and 3436 images in the training set. The original and
the rescaled images used for training have been included. The images were
resized to 512x512 for training and testing the DeeplabV3+ model. After
training with the DeeplabV3+ model (DOI: 10.7294/16628620), we were able to
achieve an F1-score of 94.2%. Details of the dataset, training process, and
code can be referenced by reading the associated journal article. The GitHub
repository information may be found in the journal article.</p><p><br>If you are using the dataset in your work, please include <b>both </b>the journal article and the dataset citation. <br></p>
DOI: 10.17632/gpc3rzsrdd
title: Supplementary Data: How to eliminate scabies parasites from fomites – a high throughput ex vivo experimental study.
DOI: 10.6084/m9.figshare.21440475.v3
title: Rehearsal_032022.mat

description: Data from the reherarsal done on 03/20/22.
DOI: 10.6084/m9.figshare.6810017.v2
title: Supplementary Table S2 from Bayesian inference of antigenic and non-antigenic variables from haemagglutination inhibition assays for influenza surveillance.

description: Parameter estimates (credible interval) of affinities of Abs
DOI: 10.6084/m9.figshare.9206546.v2
title: Body weight and heart weight raw data

description: body weight and heart weight raw data
DOI: 10.17632/zpkv8xgg2g
title: Appendix A. Supplementary data

description: The following are the Supplementary data to this article:
DOI: 10.25452/figshare.plus.18144194.v1
title: Preprocessing files supporting "Functional movement screen dataset collected with two Azure Kinect depth sensors"

description: This is preprocessing files supporting the datasets in the collection at: https://doi.org/10.25452/figshare.plus.c.5774969 <br> This dataset supports the following publication: Xing, QJ., Shen, YY., Cao, R. et al. Functional movement screen dataset collected with two Azure Kinect depth sensors. Sci Data 9, 104 (2022). https://doi.org/10.1038/s41597-022-01188-7 <br> Collection Description: This presents a dataset for vision-based autonomous functional movement screen (FMS) collected from 45 human subjects of different ages (18-59 years old) executing the following movements: deep squat, hurdle step, in-line lunge, shoulder mobility, active straight raise, trunk stability push-up, and rotary stability. Specifically, shoulder mobility was performed only once by different subjects, while the other movements were repeated for three episodes each. Each episode was saved as one record and was annotated from 0 to 3 by three FMS experts. The main strength of our database is twofold. One is the multimodal data provided, including color images, depth images, and 3D human skeleton joints. The other is the multiview data collected from the two synchronized Azure Kinect sensors in front of and on the side of the subjects. Finally, three-dimensional trajectories, quaternions, and 2D pixel trajectories of 32 joints were recorded. Our dataset contains a total of 1812 recordings, with 3624 episodes. The size of the dataset is 158 GB. As a supplement, we also provide color image data from the other two cameras (back and side low positions). This dataset provides the opportunity for automatic action quality evaluation of FMS.
DOI: 10.6084/m9.figshare.17128919.v1
title: Supplementary Material for: Scale for Space and Time Experience in Psychosis: Converging Phenomenological and Psychopathological Perspectives

description: <b><i>Introduction:</i></b> Abnormalities in the experience of space and time are fundamental to understanding schizophrenia spectrum disorders, but the precise relation between such abnormalities and psychopathological symptoms is still unclear. Therefore, the aim of our study was to introduce a novel scale for space and time experience in psychosis (STEP), specifically devised to assess schizophrenia spectrum disorders. <b><i>Methods:</i></b> The STEP scale is a semiquantitative instrument developed on the basis of several items from previous scales and phenomenological reports addressing the experience of space and time. We applied the STEP scale to three groups of subjects (patients with schizophrenia spectrum disorders, patients with predominant affective symptoms, and healthy control subjects), to whom we also applied other more general psychopathological scales, such as the Positive and Negative Syndrome Scale and the Ego-Psychopathology Inventory. <b><i>Results:</i></b> Patients with schizophrenia spectrum disorders scored significantly higher on general psychopatho­-logical scales relative to subjects belonging to the other groups. The STEP scale provided good psychometric properties regarding reliability. We also tested convergent and divergent validity of the STEP scale and found that space and time subscale scores of STEP significantly correlated with each other, as well as with the remaining general psychopathological scores. <b><i>Discussion/Conclusion:</i></b> We introduced the STEP scale as a novel instrument for the assessment of experience of space and time. Its psychometric properties showed high validity and reliability to identify psychopathological symptoms and enabled to differentiate patients with predominantly psychotic symptoms from those with predominantly affective symptoms. The STEP scale provides a standardized measure for assessing disturbances in the experience of space and time. Furthermore, it probably represents a leap forward toward the establishment of an additional dimension of symptoms proposed as “spatiotemporal psychopathology.”
DOI: 10.6084/m9.figshare.25878022.v1
title: Germline missense MLH1 Benign variants

description: Molecular dynamics simulation of the Benign variants based on the ClinVar database, the simulation is up to 100 ns.
DOI: 10.6084/m9.figshare.28381076.v2
title: Supplementary Material for: Gallstone Ileus Mimicking a Colonic Tumor: A Case Report

description: Introduction
Gall stone ileus is a rare complication of cholelithiasis which typically presents with obstruction
in the small intestine. However, it can rarely mimic a mass when it presents in unusual sites like
the sigmoid colon as in our case.

Case Presentation
We present a 42-year-old woman with history of bariatric surgery, diverticulitis status post
sigmoid colectomy and decompensated cirrhosis complicated by hepatic encephalopathy who
presented to the hospital with concern for altered mental status and was diagnosed with grade III
hepatic encephalopathy due to lactulose non adherence. During the hospitalization, patient
developed rectal bleeding with suspected colonic mass on imaging that was ultimately identified
as a large sigmoid gallstone ileus on endoscopic evaluation.

Conclusion
Our report aims to highlight the importance of considering gallstone ileus in the differential
diagnosis of colonic masses, especially in patients with relevant clinical history.
DOI: 10.6084/m9.figshare.13360199.v1
title: SLC6A4_active_excape_export.csv

description: Extract from ExcapeDB of active molecules against the SLC6A4 serotonin transporter. Saved in CSV format including molecular structure and normalized activity score (pXC50)
DOI: 10.6084/m9.figshare.27996254.v1
title: <i>Obscuromonas oborniki</i> predicted proteins

description: Protein-coding genes of <i>Obscuromonas</i> spp. were predicted and annotated by Companion Protozoa v1.0.2 (Steinbiss et al. 2016). Predicted proteins shorter than 30 aa were removed from the datasets.
DOI: 10.6084/m9.figshare.29154470.v1
title: Data for <b>Behavioral and Cognitive Shifts in </b><b><i>Podarcis muralis</i></b><b> Along an Urbanization Gradient</b>

description: Urban habitats impose novel challenges and selection pressures on organisms, leading to shifts in numerous morphological, ecological and physiological traits. In this study, we investigated how human disturbances and presence influence anti-predator responses, foraging behavior, and cognitive traits in lizards. Furthermore, we compared behavioral flexibility, measured through neophobia, spatial learning and reversal learning across populations of the common wall lizard (<i>Podarcis muralis</i>) from urban, suburban, and rural environments. Our results revealed significant behavioral differences associated with urbanization: urban and suburban lizards exhibited shorter flight initiation distances, stayed closer to refuges, and re-emerged more quickly after disturbance compared to rural conspecifics, indicating increased habituation to humans and reduce weariness in human-modified environments. Additionally, rural lizards were more neophilic, while urban and suburban individuals showed increased neophobia. Although spatial learning success varied among populations, there were no significant differences in learning speed, accuracy, or maze navigation. These findings suggest that different cognitive and behavioral traits may respond independently to urban pressures, underscoring the need to avoid broad generalizations when assessing urban adaptation.