cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8331119.v1
title: Additional file 14: of Grapevine comparative early transcriptomic profiling suggests that Flavescence dorée phytoplasma represses plant responses induced by vector feeding in susceptible varieties

description: Differentially-expressed genes in Tocai friulano after HSt and FDSt attacks. RNA-Seq results with DEGs obtained in the “noSt vs. HSt” and “noSt vs. FDSt” comparisons in Tocai friulano at 3 and 6 days post infestation. (XLSX 1353 kb)
DOI: 10.6084/m9.figshare.8331101
title: Additional file 11: of Grapevine comparative early transcriptomic profiling suggests that Flavescence dorée phytoplasma represses plant responses induced by vector feeding in susceptible varieties

description: Differentially-expressed genes in the comparisons between Chardonnay and Tocai friulano at a constitutive level and after HSt and FDSt treatments. RNA-Seq results with DEGs obtained in the comparisons between “Cha_HSt vs. To_HSt”, “Cha_FDSt vs. To_FDSt” and “Cha_noSt vs. To_noSt” cultivars at 3 and 6 days post infestation. (XLSX 6099 kb)
DOI: 10.6084/m9.figshare.8331107
title: Additional file 12: of Grapevine comparative early transcriptomic profiling suggests that Flavescence dorée phytoplasma represses plant responses induced by vector feeding in susceptible varieties

description: Enriched GO terms in the comparisons between Chardonnay and Tocai friulano at a constitutive level and after HSt and FDSt attacks. Results of GO enrichment analysis obtained in the comparisons between “Cha_HSt vs. To_HSt”, “Cha_FDSt vs. To_FDSt” and “Cha_noSt vs. To_noSt” cultivars at 3 and 6 days post infestation. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.8331101.v1
title: Additional file 11: of Grapevine comparative early transcriptomic profiling suggests that Flavescence dorée phytoplasma represses plant responses induced by vector feeding in susceptible varieties

description: Differentially-expressed genes in the comparisons between Chardonnay and Tocai friulano at a constitutive level and after HSt and FDSt treatments. RNA-Seq results with DEGs obtained in the comparisons between “Cha_HSt vs. To_HSt”, “Cha_FDSt vs. To_FDSt” and “Cha_noSt vs. To_noSt” cultivars at 3 and 6 days post infestation. (XLSX 6099 kb)
DOI: 10.6084/m9.figshare.8331107.v1
title: Additional file 12: of Grapevine comparative early transcriptomic profiling suggests that Flavescence dorée phytoplasma represses plant responses induced by vector feeding in susceptible varieties

description: Enriched GO terms in the comparisons between Chardonnay and Tocai friulano at a constitutive level and after HSt and FDSt attacks. Results of GO enrichment analysis obtained in the comparisons between “Cha_HSt vs. To_HSt”, “Cha_FDSt vs. To_FDSt” and “Cha_noSt vs. To_noSt” cultivars at 3 and 6 days post infestation. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.8330960
title: Additional file 1: of A new pragmatic design for dose escalation in phase 1 clinical trials using an adaptive continual reassessment method

description: STARPAC programming package: Code in R using a modified brcm package for STARPAC design. - Description of data: word document with Program code. (TXT 11 kb)
DOI: 10.6084/m9.figshare.8330960.v1
title: Additional file 1: of A new pragmatic design for dose escalation in phase 1 clinical trials using an adaptive continual reassessment method

description: STARPAC programming package: Code in R using a modified brcm package for STARPAC design. - Description of data: word document with Program code. (TXT 11 kb)
DOI: 10.6084/m9.figshare.8330918
title: Additional file 1: of Development and validation of GMI signature based random survival forest prognosis model to predict clinical outcome in acute myeloid leukemia

description: Development and validation of GMI signature based random survival forest prognosis model to predict clinical outcome in acute myeloid leukemia (XLSX 32 kb)
DOI: 10.6084/m9.figshare.8330918.v1
title: Additional file 1: of Development and validation of GMI signature based random survival forest prognosis model to predict clinical outcome in acute myeloid leukemia

description: Development and validation of GMI signature based random survival forest prognosis model to predict clinical outcome in acute myeloid leukemia (XLSX 32 kb)
DOI: 10.6084/m9.figshare.8330906
title: Additional file 1: of A combined ANXA2-NDRG1-STAT1 gene signature predicts response to chemoradiotherapy in cervical cancer

description: Figure S1. Study flow chart. Figure S2. Protein map from 2-D DIGE analysis. Figure S3. Boxplot of the 25 protein-coding genes obtained with the Fluidigm 48.48 Dynamic Array. Figure S4. Protein network analysis. Figure S5. NAC inhibits generation of ROS in CaSki and C-4I cells. Figure S6. Modulation of protein levels by irradiation (IR) in CaSki and C-4I cells. Table S1. Clinicopathological features of the overall series. Table S2. List of primers DeltaGene (Fluidigm) used in RT-qPCR. Table S3. Taqman assays for digital PCR. Table S4. Twenty-two protein spots identified by 2D-DIGE analysis as differentially represented in samples from Sensitive (S) and Resistant (R) patients. Table S5. Identification details of proteins present in spots shown in Table S4. Table S6. Proteins selected as relevant in cancer systems and/or in therapy response from the list of proteins identified by differential proteomic analysis (Table S4 and S5). Table S7. Results of the LQ-fit to the experimental datasets shown in Fig. 3. (ZIP 1900 kb)
DOI: 10.6084/m9.figshare.8330906.v1
title: Additional file 1: of A combined ANXA2-NDRG1-STAT1 gene signature predicts response to chemoradiotherapy in cervical cancer

description: Figure S1. Study flow chart. Figure S2. Protein map from 2-D DIGE analysis. Figure S3. Boxplot of the 25 protein-coding genes obtained with the Fluidigm 48.48 Dynamic Array. Figure S4. Protein network analysis. Figure S5. NAC inhibits generation of ROS in CaSki and C-4I cells. Figure S6. Modulation of protein levels by irradiation (IR) in CaSki and C-4I cells. Table S1. Clinicopathological features of the overall series. Table S2. List of primers DeltaGene (Fluidigm) used in RT-qPCR. Table S3. Taqman assays for digital PCR. Table S4. Twenty-two protein spots identified by 2D-DIGE analysis as differentially represented in samples from Sensitive (S) and Resistant (R) patients. Table S5. Identification details of proteins present in spots shown in Table S4. Table S6. Proteins selected as relevant in cancer systems and/or in therapy response from the list of proteins identified by differential proteomic analysis (Table S4 and S5). Table S7. Results of the LQ-fit to the experimental datasets shown in Fig. 3. (ZIP 1900 kb)
DOI: 10.6084/m9.figshare.8330894
title: Additional file 3: of The effect of breed and diet type on the global transcriptome of hepatic tissue in beef cattle divergent for feed efficiency

description: All canonical pathways identified as significantly enriched by IPA across eachÂ dietary phase for both Holstein-Friesian and Charolais steers. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8330897
title: Additional file 4: of The effect of breed and diet type on the global transcriptome of hepatic tissue in beef cattle divergent for feed efficiency

description: The range of P-values for the biological functions that were significantly enriched across all dietary phases for low-RFI CharolaisÂ and Holstein-Friesian steers. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8330894.v1
title: Additional file 3: of The effect of breed and diet type on the global transcriptome of hepatic tissue in beef cattle divergent for feed efficiency

description: All canonical pathways identified as significantly enriched by IPA across eachÂ dietary phase for both Holstein-Friesian and Charolais steers. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8330897.v1
title: Additional file 4: of The effect of breed and diet type on the global transcriptome of hepatic tissue in beef cattle divergent for feed efficiency

description: The range of P-values for the biological functions that were significantly enriched across all dietary phases for low-RFI CharolaisÂ and Holstein-Friesian steers. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8330885
title: Additional file 2: of The effect of breed and diet type on the global transcriptome of hepatic tissue in beef cattle divergent for feed efficiency

description: All genes deemed to be differentially expressed for each individual dietary phase for Charolias and Holstein-Friesian steers.Â (XLSX 30 kb)
DOI: 10.6084/m9.figshare.8330885.v1
title: Additional file 2: of The effect of breed and diet type on the global transcriptome of hepatic tissue in beef cattle divergent for feed efficiency

description: All genes deemed to be differentially expressed for each individual dietary phase for Charolias and Holstein-Friesian steers.Â (XLSX 30 kb)
DOI: 10.6084/m9.figshare.8330879
title: Additional file 1: of The effect of breed and diet type on the global transcriptome of hepatic tissue in beef cattle divergent for feed efficiency

description: Chemical composition of the feed offered to steers offered three different diets. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8330879.v1
title: Additional file 1: of The effect of breed and diet type on the global transcriptome of hepatic tissue in beef cattle divergent for feed efficiency

description: Chemical composition of the feed offered to steers offered three different diets. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8330858
title: Additional file 6: of Genome-wide associations and epistatic interactions for internode number, plant height, seed weight and seed yield in soybean

description: Significantly associated genome wide epistatic (SNP-SNP) interactions and associated candidate genes. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8330852
title: Additional file 5: of Genome-wide associations and epistatic interactions for internode number, plant height, seed weight and seed yield in soybean

description: PI lines used in the study, arranged based on maturity group and country of origin. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.8330858.v1
title: Additional file 6: of Genome-wide associations and epistatic interactions for internode number, plant height, seed weight and seed yield in soybean

description: Significantly associated genome wide epistatic (SNP-SNP) interactions and associated candidate genes. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8330852.v1
title: Additional file 5: of Genome-wide associations and epistatic interactions for internode number, plant height, seed weight and seed yield in soybean

description: PI lines used in the study, arranged based on maturity group and country of origin. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.8330837
title: Additional file 3: of Genome-wide associations and epistatic interactions for internode number, plant height, seed weight and seed yield in soybean

description: Summary of GWAS regions, genes of interest, and overlapping QTLs. Extends Table 2, with SNP position data, P-values, distances to SNPs, and additional information about functional annotations. Counts of candidate genes are given for regions defined by two methods: by flanking non-significant markers around significant SNP(s), and within a window defined by the significant SNP(s) plus 100â kb before and after the significant SNP(s). (XLSX 22 kb)
DOI: 10.6084/m9.figshare.8330840
title: MOESM1 of Transcriptomic analysis of the oleaginous yeast Lipomyces starkeyi during lipid accumulation on enzymatically treated corn stover hydrolysate

description: Additional file 1. Excel file that contains metabolite quantification during the bioreactor runs as well as raw RPKM values from RNA-seq. Genes that are differentially expressed between the MMPCS and MMGX bioreactor runs during at least one phase are listed along with their fold-change values.
DOI: 10.6084/m9.figshare.8330846
title: Additional file 4: of Genome-wide associations and epistatic interactions for internode number, plant height, seed weight and seed yield in soybean

description: Genes within GWAS regions along with gene annotations. Genes are given for regions defined by two methods: by flanking non-significant markers around significant SNP(s), and within a window defined by the significant SNP(s) plus 100â kb before and after the significant SNP(s). (XLSX 150 kb)
DOI: 10.6084/m9.figshare.8330840.v1
title: MOESM1 of Transcriptomic analysis of the oleaginous yeast Lipomyces starkeyi during lipid accumulation on enzymatically treated corn stover hydrolysate

description: Additional file 1. Excel file that contains metabolite quantification during the bioreactor runs as well as raw RPKM values from RNA-seq. Genes that are differentially expressed between the MMPCS and MMGX bioreactor runs during at least one phase are listed along with their fold-change values.
DOI: 10.6084/m9.figshare.8330846.v1
title: Additional file 4: of Genome-wide associations and epistatic interactions for internode number, plant height, seed weight and seed yield in soybean

description: Genes within GWAS regions along with gene annotations. Genes are given for regions defined by two methods: by flanking non-significant markers around significant SNP(s), and within a window defined by the significant SNP(s) plus 100â kb before and after the significant SNP(s). (XLSX 150 kb)
DOI: 10.6084/m9.figshare.8330837.v1
title: Additional file 3: of Genome-wide associations and epistatic interactions for internode number, plant height, seed weight and seed yield in soybean

description: Summary of GWAS regions, genes of interest, and overlapping QTLs. Extends Table 2, with SNP position data, P-values, distances to SNPs, and additional information about functional annotations. Counts of candidate genes are given for regions defined by two methods: by flanking non-significant markers around significant SNP(s), and within a window defined by the significant SNP(s) plus 100â kb before and after the significant SNP(s). (XLSX 22 kb)
DOI: 10.6084/m9.figshare.8330816
title: Additional file 5: of Concurrent psychiatry for patients enrolled in opioid agonist treatment: a propensity score matched cohort study in Ontario Canada

description: Figure 3. upplimentary Table (All-Cause Mortality and Acute Health Service Use During the First 3 and 12 Months of a Concurrent Episode of Care by Place of Residence). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8330810
title: Additional file 4: of Concurrent psychiatry for patients enrolled in opioid agonist treatment: a propensity score matched cohort study in Ontario Canada

description: Figure 2. Supplimentary Table (Relative Risk for In vs. Out of OAT). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8330816.v1
title: Additional file 5: of Concurrent psychiatry for patients enrolled in opioid agonist treatment: a propensity score matched cohort study in Ontario Canada

description: Figure 3. upplimentary Table (All-Cause Mortality and Acute Health Service Use During the First 3 and 12 Months of a Concurrent Episode of Care by Place of Residence). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.8330810.v1
title: Additional file 4: of Concurrent psychiatry for patients enrolled in opioid agonist treatment: a propensity score matched cohort study in Ontario Canada

description: Figure 2. Supplimentary Table (Relative Risk for In vs. Out of OAT). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.12869957
title: Venezuela-Aves-Psittacidae-Occupancy

description: Análisis de los datos de detección del orden Psitácidos en Venezuela.<br>Este repositorio contiene el código original usado en la publicación:<br>FERRER-PARIS, J., & SÁNCHEZ-MERCADO, A. (2020). Making inferences about non-detection observations to improve occurrence predictions in Venezuelan Psittacidae. Bird Conservation International, 1-17. doi:10.1017/S0959270919000522
DOI: 10.6084/m9.figshare.12869957.v1
title: Venezuela-Aves-Psittacidae-Occupancy

description: Análisis de los datos de detección del orden Psitácidos en Venezuela.<br>Este repositorio contiene el código original usado en la publicación:<br>FERRER-PARIS, J., & SÁNCHEZ-MERCADO, A. (2020). Making inferences about non-detection observations to improve occurrence predictions in Venezuelan Psittacidae. Bird Conservation International, 1-17. doi:10.1017/S0959270919000522
DOI: 10.6084/m9.figshare.8330669
title: Additional file 1: of Abdominal skin tensile strength in aesthetic and massive weight loss patients and its role in ventral hernia repair

description: Aesthetic and post-bariatric data. Two sheets with clinical and numerical data collected from both groups of patients. The vertical and horizontal tensile strength tests are identified as MED1, MED2, MED3 and MED4. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8330669.v1
title: Additional file 1: of Abdominal skin tensile strength in aesthetic and massive weight loss patients and its role in ventral hernia repair

description: Aesthetic and post-bariatric data. Two sheets with clinical and numerical data collected from both groups of patients. The vertical and horizontal tensile strength tests are identified as MED1, MED2, MED3 and MED4. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8330627
title: Data from - Social learning in solitary juvenile sharks

description: Dataset and R code from a study that investigated social learning and the effect of frequency of social exposure in non-social, juvenile Port Jackson sharks.
DOI: 10.6084/m9.figshare.8330468
title: Germination Data

description: DATA SET FOR GERMINATION FOR DIFFERENT LANDSCAPING PLANT SPECIES.
DOI: 10.6084/m9.figshare.8330627.v1
title: Data from - Social learning in solitary juvenile sharks

description: Dataset and R code from a study that investigated social learning and the effect of frequency of social exposure in non-social, juvenile Port Jackson sharks.
DOI: 10.17608/k6.auckland.8330465
title: Course Transaction Space - macro-cycle 1

description: Raw data for the CT-space design research project - macro cycle 1
DOI: 10.17608/k6.auckland.8330465.v1
title: Course Transaction Space - macro-cycle 1

description: Raw data for the CT-space design research project - macro cycle 1
DOI: 10.6084/m9.figshare.8330285
title: Wind power observation

description: The data were tested based on the wind power, wind direction, and wind speed data collected from wind farms in regions A, B, C in Jeju Island in order to predict the short-term wind power.
DOI: 10.6084/m9.figshare.8330264
title: Table S1. Antibodies information.docx

description: Table S1. Antibodies information
DOI: 10.6084/m9.figshare.8330264.v1
title: Table S1. Antibodies information.docx

description: Table S1. Antibodies information
DOI: 10.6084/m9.figshare.8330285.v1
title: J_2014_01_C.txt

description: The data were tested based on the wind power, wind direction, and wind speed data collected from wind farms in regions A, B, C in Jeju Island in order to predict the short-term wind power.
DOI: 10.6084/m9.figshare.8330285.v2
title: J_2014_01_C.txt

description: The data were tested based on the wind power, wind direction, and wind speed data collected from wind farms in regions A, B, C in Jeju Island in order to predict the short-term wind power.
DOI: 10.6084/m9.figshare.8330213
title: Tissue-specific gene co-expression networks

description: Tissue-specific gene co-expression networks
DOI: 10.6084/m9.figshare.8330213.v1
title: Tissue-specific gene co-expression networks

description: Tissue-specific gene co-expression networks
DOI: 10.6084/m9.figshare.8330183
title: Express yourself? Ease to express one’s identity mediates the relationship between national belonging and mental health

description: A number of studies have reported a positive relationship between levels of national identification and well-being. Although this link is clear, the relationship is likely influenced by a number of other variables. In the current study, we examine two such variables: age and the ease with which people feel they can express their identity in the national context. Participants were drawn from three waves (2008–12) of the biannual New Zealand General Social Survey (NZGSS). The NZGSS consists of a number of questions related to well-being. The current study utilised the questions related to one’s sense of belonging to New Zealand, ease to express one’s identity in New Zealand, and mental health. When controlling for physical health, standard of living, and several demographic control variables, there was a clear relationship between one’s sense of belonging to New Zealand and mental health. Further, this relationship was stronger for older than younger participants. Finally, the ease with which participants felt they could express their identity in New Zealand partially mediated the relationship. Future research should elucidate which specific aspects of their identity people feel is constrained in the national context.
DOI: 10.6084/m9.figshare.8330183.v2
title: Express yourself? Ease to express one’s identity mediates the relationship between national belonging and mental health

description: A number of studies have reported a positive relationship between levels of national identification and well-being. Although this link is clear, the relationship is likely influenced by a number of other variables. In the current study, we examine two such variables: age and the ease with which people feel they can express their identity in the national context. Participants were drawn from three waves (2008–12) of the biannual New Zealand General Social Survey (NZGSS). The NZGSS consists of a number of questions related to well-being. The current study utilised the questions related to one’s sense of belonging to New Zealand, ease to express one’s identity in New Zealand, and mental health. When controlling for physical health, standard of living, and several demographic control variables, there was a clear relationship between one’s sense of belonging to New Zealand and mental health. Further, this relationship was stronger for older than younger participants. Finally, the ease with which participants felt they could express their identity in New Zealand partially mediated the relationship. Future research should elucidate which specific aspects of their identity people feel is constrained in the national context.
DOI: 10.6084/m9.figshare.8330183.v1
title: Express yourself? Ease to express one’s identity mediates the relationship between national belonging and mental health

description: A number of studies have reported a positive relationship between levels of national identification and well-being. Although this link is clear, the relationship is likely influenced by a number of other variables. In the current study, we examine two such variables: age and the ease with which people feel they can express their identity in the national context. Participants were drawn from three waves (2008–12) of the biannual New Zealand General Social Survey (NZGSS). The NZGSS consists of a number of questions related to well-being. The current study utilised the questions related to one’s sense of belonging to New Zealand, ease to express one’s identity in New Zealand, and mental health. When controlling for physical health, standard of living, and several demographic control variables, there was a clear relationship between one’s sense of belonging to New Zealand and mental health. Further, this relationship was stronger for older than younger participants. Finally, the ease with which participants felt they could express their identity in New Zealand partially mediated the relationship. Future research should elucidate which specific aspects of their identity people feel is constrained in the national context.
DOI: 10.6084/m9.figshare.8330102
title: Figure 1 data

description: Data for all partner preference tests performed (imaging and traditional)
DOI: 10.6084/m9.figshare.8330105
title: Luteibacter pinisoli Genome

description: A log file for the unicycler run used to generate a complete genome sequence for Luteibacter pinisoli MAH14
DOI: 10.6084/m9.figshare.8330105.v1
title: Luteibacter pinisoli Genome

description: A log file for the unicycler run used to generate a complete genome sequence for Luteibacter pinisoli MAH14
DOI: 10.6084/m9.figshare.8330102.v1
title: Figure 1 data

description: Data for all partner preference tests performed (imaging and traditional)