cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14198795.v1
title: Supplementary Material for: MRI Features for Predicting Microvascular Invasion of Hepatocellular Carcinoma: A Systematic Review and Meta-Analysis

description: <b><i>Purpose:</i></b> Microvascular invasion (MVI) is an important prognostic factor in patients with hepatocellular carcinoma (HCC). However, the reported results of magnetic resonance imaging (MRI) features for predicting MVI of HCC are variable and conflicting. Therefore, this meta-analysis aimed to identify the significant MRI features for MVI of HCC and to determine their diagnostic value. <b><i>Methods:</i></b> Original studies reporting the diagnostic performance of MRI for predicting MVI of HCC were identified in MEDLINE and EMBASE up until January 15, 2020. Study quality was assessed using QUADAS-2. A bivariate random-effects model was used to calculate the meta-analytic pooled diagnostic odds ratio (DOR) and 95% confidence interval (CI) for each MRI feature for diagnosing MVI in HCC. The meta-analytic pooled sensitivity and specificity were calculated for the significant MRI features. <b><i>Results:</i></b> Among 235 screened articles, we found 36 studies including 4,274 HCCs. Of the 15 available MRI features, 7 were significantly associated with MVI: larger tumor size (&gt;5 cm) (DOR = 5.2, 95% CI [3.0–9.0]), rim arterial enhancement (4.2, 95% CI [1.7–10.6]), arterial peritumoral enhancement (4.4, 95% CI [2.8–6.9]), peritumoral hypointensity on hepatobiliary phase imaging (HBP) (8.2, 95% CI [4.4–15.2]), nonsmooth tumor margin (3.2, 95% CI [2.2–4.4]), multifocality (7.1, 95% CI [2.6–19.5]), and hypointensity on T1-weighted imaging (T1WI) (4.9, 95% CI [2.5–9.6]). Both peritumoral hypointensity on HBP and multifocality showed very high meta-analytic pooled specificities for diagnosing MVI (91.1% [85.4–94.8%] and 93.3% [74.5–98.5%], respectively). <b><i>Conclusions:</i></b> Seven MRI features including larger tumor size, rim arterial enhancement, arterial peritumoral enhancement, peritumoral hypointensity on HBP, nonsmooth margin, multifocality, and hypointensity on T1WI were significant predictors for MVI of HCC. These MRI features predictive of MVI can be useful in the management of HCC.
DOI: 10.17632/s7cmcz3wj9
title: Sweet pepers maturity data

description: Two crops for each cultivar, red sweet peppers (cultivar: Banji; seed company: Efal) and yellow sweet peppers (cultivar: Liri Seed; company: Hazera), were harvested in a commercial greenhouse in Camehin located in southwest Israel. The first crop (denoted as ‘Set1’) was harvested from the 12th fruit setting on November 2017 and the second crop (denoted as ‘Set2’) from the 16th fruit setting on January 2019. The peppers were selected from four maturity classes. The peppers were initially classified into immature (classes 1 and 2, defined as ‘not to be harvested’) and mature (classes 3 and 4, defined as ‘to be harvested’) peppers by professional human harvesters in the greenhouse. The mature peppers were manually harvested in the morning of the experiment by the harvesters, and then were randomly chosen for the experiment by two expert observers and classified into classes 3 and 4 according to surface color (95–100% colored were defined as class 4; all others were defined as class 3). Classes 1 and 2 were manually harvested by the observers according to surface color (0–5% colored were defined as class 1; all others were defined as class 2). For set 1 the third letter in each file name indicates the maturity level of the pepper. (A-class 1, B-class2, C-class 3, D-class 4) For set 2 the L_ on the file name indicates the maturity level of the pepper (for example R_L2_P10_S1 is a pepper from class 2)
DOI: 10.6084/m9.figshare.7092851.v2
title: Handouts - Ten Lectures on Cognitive Construction of Meaning

description: As we think and talk, rich arrays of mental spaces and connections between them are constructed unconsciously. Conceptual integration of mental spaces leads to new meaning, global insight, and compressions useful for memory and creativity. A powerful aspect of conceptual integration networks is the dynamic emergence of novel structure in all areas of human life (science, religion, art, ...). The emergence of complex metaphors creates our conceptualization of time. The same operations play a role in material culture generally. Technology evolves to produce cultural human artefacts such as watches, gauges, compasses, airplane cockpit displays, with structure specifically designed to match conceptual inputs and integrate with them into stable blended frames of perception and action that can be memorized, learned by new generations, and thus culturally transmitted.
DOI: 10.17632/mcfjmz63m5
title: CONTIN: A general purpose constrained regularization program for inverting noisy linear algebraic and integral equations

description: Title of program: CONTIN (VERSION 2DP) Catalogue Id: AAOB_v1_0 Nature of problem Many experiments are indirect in that the observed data are linear integral (or matrix) transforms of the quantities to be estimated. These transforms typically arise because of the imperfect impulse response of the detection system or because of the indirect nature of the experiment itself (as with Fourier transforms in diffraction and Laplace transforms in relaxation experiments). The inversion of these linear operator equations are generally ill-posed problems in that there exists a large num ... Versions of this program held in the CPC repository in Mendeley Data aaob_v1_0; CONTIN (VERSION 2DP); 10.1016/0010-4655(82)90174-6 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/hcywkb84gk
title: Supplemental Materials: Understanding potential opportunities and risks associated with feeding supplemental rumen available fats to mitigate enteric methane emissions in lactating dairy cows

description: Supplemental Materials: Understanding potential opportunities and risks associated with feeding supplemental rumen available fats to mitigate enteric methane emissions in lactating dairy cows
DOI: 10.17632/f3mdswct65
title: Data for Constraining re-equilibration timescales of contact thermal metamorphism on the Moon 

description: Supplementary materials for manuscript 'Constraining re- equilibration timescales of contact thermal metamorphism on the Moon'. JPG files are high resolution photomicrographs of all samples investigated in this study. Excel file 'SOM tables_V1' contains all mineral data collected for this study. Therms32.exe is the THERMOS programme use for the thermal modeling of the lunar crust (see manuscript for details).
DOI: 10.17632/kyhrbg8mft
title: Cannabis Seed Gender Dataset

description: Dataset from pictures of cannabis' seeds , this seeds was farmed for identify its gender.
DOI: 10.17632/zy9h96vfgk
title: iExcavate_ automatic excavation safety modeling tool

description: this dataset contains automatic safety rule compliance approach for excavation works leveraging algorithmic modeling tools and BIM technologies. -e focused approach comprises of the following three modules: information extraction and logic design (IELD), information conversion and process integration (ICPI), and automodeling and safety plan generation (ASPG). Specifically, the scope of the paper is limited to major risks such as cave-ins, fall, safety egress, and prohibited zones risks. A set of rules-based algorithms was developed in commercially available software using visual programming language (VPL) that automatically generates geometric conditions in BIM and visualizes the potential risks and safety resources installation along with their quantity take-off and optimized locations.
DOI: 10.17632/fc8ngsgf9g
title: Data for: Supplier selection and pre-positioning strategy in humanitarian relief: a case study

description: Data for demand and probability
DOI: 10.25446/oxford.21564528.v1
title: M111 [The Reader], Set 2 of 3. Typescript fragment, unsigned and undated. 4p. Transcription.

description: TEI-XML transcription of M111-1 [The Reader]. Set 2 of 3. Typescript fragment, with the author's ms. corrections, unsigned and undated. 4p. <br> Text encoded as part of 'The Digital "Anon": A Digital Genetic Edition of Virginia Woolf's Final Essays'. This project, funded by Leverhulme Grant ECF-2022-602, seeks to construct a TEI-XML based digital edition of the drafts of 'Anon' and 'The Reader', among the final documents Woolf wrote before her death. <br> <strong>Author</strong> Woolf, Virginia <br> <strong>Editor</strong> Phillips, Joshua <br> <strong>Record Type</strong> Transcription <br> <strong>Location</strong> New York Public Library
DOI: 10.6084/m9.figshare.14500047.v1
title: Supplementary Material for: Close Observation versus Additional Surgery after Noncurative Endoscopic Resection of Esophageal Squamous Cell Carcinoma

description: <b><i>Introduction:</i></b> After noncurative endoscopic submucosal dissection (ESD) of superficial esophageal squamous cell carcinoma (SESCC), additional esophagectomy is generally recommended. However, considering its high mortality and morbidity, it is uncertain if additional surgery improves the clinical outcomes. This study aimed to compare the clinical outcomes between patients who were observed without additional treatment and those who underwent radical esophagectomy. <b><i>Methods:</i></b> A total of 52 patients with SESCC who underwent complete but noncurative ESD from January 2008 to December 2016 at the Samsung Medical Center and Asan Medical Center in Korea were retrospectively analyzed. Clinicopathologic characteristics and oncologic outcomes were compared between the observation group (<i>n</i> = 23) and the additional surgery group (<i>n</i> = 29). <b><i>Results:</i></b> During a mean follow-up of 34.4 and 41.7 months, respectively, the rates of death (observation vs. surgery, 17.4 vs. 10.3%; <i>p</i> = 0.686), recurrence (observation vs. surgery, 13 vs. 17.2%; <i>p</i> = 1.000), and disease-specific death (observation vs. surgery, 4.3 vs. 6.9%; <i>p</i> = 1.000) did not significantly differ between the 2 groups. The 3-year overall survival was 86.3 and 96.4%, respectively (<i>p</i> = 0.776). The 3-year recurrence-free survival (observation vs. surgery, 85.0 vs. 88.7%; <i>p</i> = 0.960) and disease-specific survival (observation vs. surgery, 95.2 vs. 96.4%; <i>p</i> = 0.564) also did not significantly differ. <b><i>Conclusions:</i></b> The clinical outcomes of close observation of noncuratively resected SESCC are comparable to those of additional surgery, at least in the midterm. The wait-and-see strategy could be a feasible management option after noncurative ESD of SESCC in selected patients.
DOI: 10.17632/hshn2rtcb5
title: Large, medium, and small problem instance data for experimental design and model validation in supply chain design

description: The provided data sets contain capacity, fixed cost, demand, transit time, and unit shipping costs for three different problem instance sizes. They can be used to run different types of computational studies to test and validate a supply chain design.
DOI: 10.17632/sj3dc9bw64
title: ALCOHOL BASED HAND SANITIZERS IN KENYA- PRE AND PERI COVID-19

description: In the wake of the COVID-19 pandemic, Alcohol- Based Hand Sanitizers were highly recommended globally as a control mechanism for the  virus. However, there is no documented evidence of the impact of the pandemic on the quality of the sanitizers. The study hypothesized that there was no significant difference in the quality of  sanitizers produced in the periods under investigation.
This data includes the Alcohol- Based Hand Sanitizers  available in Kenyan retail market before and during the COVID-19 pandemic period. the laboratory results for Efficacy testing, the gas chromatography results, pH analyses and the visible inspection for compliance with Kenyan standard KS789:2002 - Specifications for Alcohol hand sanitizers.
DOI: 10.6084/m9.figshare.25930756.v1
title: Supplementary Material for: Statistical Analysis Plan for the INTEnsive ambulance-delivered blood pressure Reduction in hyper-ACute stroke Trial (INTERACT4).

description: Introduction: Recruitment is complete in the fourth INTEnsive ambulance-delivered blood pressure Reduction in hyper-ACute stroke Trial (INTERACT4) is a multicenter, prospective, randomized, open-label, blinded endpoint assessed trial of pre-hospital blood pressure (BP) lowering initiated in the ambulance for patients with a suspected acute stroke and elevated BP in China. According to the registered and published trial protocol and developed by the blinded trial Steering Committee and Operations team, this manuscript outlines a detailed statistical analysis plan for the trial prior to database lock.
Methods: Patients were randomized (1:1) to intensive (target systolic BP [SBP] 130-140 mmHg within 30 minutes) or guideline-recommended BP management (BP lowering only considered if SBP &gt;220 mmHg) group. Primary outcome is an ordinal analysis of the full range of scores on the modified Rankin scale at 90 days. A modified sample size of 2320 was estimated to provide 90% power to detect a 22% reduction in the odds (common odds ratio of 0.78) of a worse functional outcome using ordinal logistic regression, on the assumption of 5% patients with missing outcome and 6% patients with a stroke mimic.
Conclusion: The statistical analysis plan for the trial has been developed to ensure transparent, verifiable, and prespecified analysis, and to avoid potential bias in the evaluation of the trial intervention.
DOI: 10.17632/79kfph9mx9
title: MD studies on L-Phe oxidase

description: L-Phe oxidase (PAO) contains FAD as cofactor and catalyzes the oxidation of L-Phe.  In this companion paper, we performed the molecular dynamics study on the enzyme substrate complex, and showed the importance of the hydrogen bond formation in the PAO catalysis.
DOI: 10.17632/9wf2hhd4yf
title: Statistical data of a clinical study of the severity of bronchial asthma in children of the Kharkov region, 2017
DOI: 10.17632/jhj94nmz25
title: Data for: Estimating the transient thermal boundary conditions with an improved space marching technique

description: The dataset contains the MATLAB code for the space marching method proposed in the article and the temperature data from the cryogenic quenching experiment.
DOI: 10.17632/9b7y8wmn9f
title: base de datos

description: base de datos
DOI: 10.17632/4j5xwtxfwy
title: Asymptotic solution of coupled equations for electron scattering

description: Title of program: ASYM Catalogue Id: ACQE_v1_0 Nature of problem The program ASYM solves coupled second-order differential equations of the type encountered in the close-coupling formulation of electron-atom (ion) scattering problems, at some specified point in the asymptotic region. Lineraly independent sets of wave functions are found which could be used as boundary solutions for a complete solution of the close-coupling integro-differential equations. Versions of this program held in the CPC repository in Mendeley Data ACQE_v1_0; ASYM; 10.1016/0010-4655(69)90002-2 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/f3tr9rhcbr
title: Data for: A modified wash-off function for stormwater suspended solids modelling

description: Site: Urban residential catchment located in Kimmage, Dublin, Ireland. Stormwater samples taken at outlet of separate pipe-and-gully system using automatic water sampler. 18-month dataset at two minute intervals: rain (mm) - tipping bucket gauge on site, flow (l/s) - area velocity probe (ISCO 2150) mounted in sewer pipe, suspended solids concentration (mg/L).
DOI: 10.17632/nj5yf7k3s7
title: Data for: ESTIMATION AND ANALYSIS OF HIGH SPATIAL RESOLUTION INVENTORIES OF ATMOSPHERIC EMISSIONS FROM SEVERAL SECTORS IN ARGENTINA

description: This data article provides an extensive and complete description of the high spatial resolution inventory (HSRI) estimation shown in the article “High resolution inventory of atmospheric emissions from livestock production, agriculture, and biomass burning sectors of Argentina” Puliafito et al. https://doi.org/10.1016/j.atmosenv.2019.117248 and its 2014 update.
DOI: 10.6084/m9.figshare.12858062.v4
title: Population density and basic reproductive number of COVID-19 across United States counties (Data and Script)

description: This repository includes:<br>1. RData file that includes two data sets: (a) Data set with all United State counties (n=3,221) (b) Data set with United State counties with greater than 25 COVID-19 cases at the end of the exponential growth period (n=1,151)2. R script to run the main and sensitivity analysis of the study<br>Work described in:Sy KTL, White LF, Nichols BE. Population density and basic reproductive number of COVID-19 across United States counties. Under Review, 2020.<br>Original Data Sources:New York Times. Coronavirus (Covid-19) Data in the United States - https://github.com/nytimes/covid-19-data/blob/master/us-counties.csv<br>
DOI: 10.6084/m9.figshare.5127955.v1
title: Supplementary Material for: Global Individual Ancestry Using Principal Components for Family Data

description: Studies of complex human diseases and traits associated with candidate genes are potentially vulnerable to bias (confounding) due to population stratification and inbreeding, especially in admixed population. In GWAS, the principal components (PCs) method provides a global ancestry value per subject, allowing corrections for population stratification. However, these coefficients are typically estimated assuming unrelated individuals, and if family structure is present and ignored, such substructures may induce artifactual PCs. Extensions of the PCs method have been proposed by Konishi and Rao [Biometrika 1992;79:631-641], taking into account only siblings' relatedness, and by Oualkacha et al. [Stat Appl Genet Mol Biol 2012, DOI: 10.2202/1544-6115.1711], taking into account large pedigrees and high-dimensional phenotype data. In this work, we extend these methods to estimate the global individual ancestry coefficients from PCs derived from different variance component matrix estimators using SNPs from two simulated data sets and two real data sets: the GENOA sibship data consisting of European and African-American subjects and the Baependi Heart Study consisting of 80 extended Brazilian families, both with genotyping data from the Affymetrix 6.0 chip. Our results show that the family structure plays an important role in the estimation of the global individual ancestry value for extended pedigrees but not for sibships.
DOI: 10.17632/x5sxsnprbd
title: Emotional link between color and music - Raw dataset

description: Raw data from 60 participants (P#) for the assessment of (A) the music-to-color association, (B) the perceptual characteristics and emotion of color, and (C) the emotion of music. Part A consists on the selection of the three most (+) and the three least (-) representative colors, from the 37 colors based on the Berkeley Color Project (Schloss, Poggesi, & Palmer, 2011), for each of the 16 musical stimuli; colors are labeled with an alphanumeric ID. Part B consists on the evaluation of each of the 37 colors, according to the variables of Red-Green, Yellow-Blue, Saturation, Brightness, Valence, and Arousal, on a scale from -100 to +100. Part C consits on the evaluation of each of the 16 musical stimuli, according to the variables of Valence, Arousal, Pleasure, and Familiarity, on a scale from -100 to +100. All data was anonymously acquired with the informed consent of each of the 60 participants, according to the World Medical Association (2013), for academic, research, and publication purposes. For more information, see Valdés-Alemán, Zamudio-Gurrola, and Téllez-Alanís (on press).

References:
<div class="csl-entry">Schloss, K. B., Poggesi, R. M., &#38; Palmer, S. E. (2011). Effects of university affiliation and “school spirit” on color preferences: Berkeley versus Stanford. <i>Psychonomic Bulletin and Review</i>, <i>18</i>(3), 498–504. https://doi.org/10.3758/s13423-011-0073-1</div>
<div class="csl-entry">Valdés-Alemán, P., Zamudio-Gurrola, A., &#38; Téllez-Alanís, B. (on press). The Emotional Link Between Color and Music: What Happens with Atonal Music? <i>Psychomusicology: Music, Mind, and Brain</i>, 1–35.</div>
<div class="csl-entry">World Medical Association. (2013). World Medical Association Declaration of Helsinki. <i>Journal of American Medical Association</i>, <i>310</i>(20), 2191–2194. https://doi.org/10.1001/jama.2013.281053</div>
DOI: 10.6084/m9.figshare.3172627.v1
title: Radiological characterization of cerebral phenotype in newborn microcephaly cases from 2015 outbreak in Brazil

description: Brazil is facing, since October of 2015, an outbreak of microcephalic fetuses. This outbreak is correlated with the beginning of circulation of Zika virus (ZIKV) in the country. Although it is clear that the size of the head is diminished in these fetuses, the brain phenotype associated with these malformations is unknown. We collected computed tomography images of the microcephaly cases from the region of Natal, Rio Grande do Norte, from September 2015 to February 2016. The CT acquisition was performed by a multidetector equipment, Philips Brilliance 64 (Philips Medical Systems; Cleveland, EUA), with tomographic section thickness of 1.0 mm, without administration of iodinated contrast. The protocol for this study was reviewed and approved by the Universidade Federal do Rio Grande do Norte Ethics Committee, certificate of approval CAAE 53111416.7.0000.5537. Role of funding source: The funding agencies had no participation in this work. The microcephalies derived from the current outbreak are associated with intracerebral calcifications, malformation of the ventricular system, migratory disorders in the telencephalon and, in a lower frequency, malformation of the cerebellum and brainstem. The characteristics here described are not usually found in other types of microcephaly. We suggest that this work can be used as a guideline to identify microcephaly cases associated to the current outbreak.
DOI: 10.7294/18317777.v1
title: Correlating side scan sonar backscatter data with geotechnical properties presentation and dataset

description: This contains a dataset with side scan sonar backscatter data and associated geotechnical soil data taken at different field sites. A conference presentation for this data is included.