cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25934/00005594.0
title: Available IPD datapackage for study 'A Comparative, Randomized, Parallel-group, Multi-center, Phase IIIB Study to Investigate the Efficacy of Subcutaneous (SC) Rituximab Versus Intravenous (IV) Rituximab Both in Combination With CHOP (R-CHOP) in Previously Untreated Patients With CD20-positive Diffuse Large B-cell Lymphoma (DLBCL)'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00005594.1
title: IPD datapackage for study 'A Comparative, Randomized, Parallel-group, Multi-center, Phase IIIB Study to Investigate the Efficacy of Subcutaneous (SC) Rituximab Versus Intravenous (IV) Rituximab Both in Combination With CHOP (R-CHOP) in Previously Untreated Patients With CD20-positive Diffuse Large B-cell Lymphoma (DLBCL)' and research request: 'Infective outcomes in cancer patients treated with subcutaneous versus intravenous trastuzumab and rituximab: an individual patient data meta-analysis '

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.17876/rave/dr.6/fields/20100929_2021m15
title: RAVE Field 20100929_2021m15

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20100929_2237m64
title: RAVE Field 20100929_2237m64

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20100929_2345m10
title: RAVE Field 20100929_2345m10

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20100930_0437m45
title: RAVE Field 20100930_0437m45

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20100930_2012m40
title: RAVE Field 20100930_2012m40

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20100930_2221m70
title: RAVE Field 20100930_2221m70

description: A field from the RAVE survey
DOI: 10.17632/4vrcz8c3k8.1
title: Drosophila Cyp40 paper data

description: Drosophila Cyp40 paper data
DOI: 10.17876/rave/dr.6/fields/20101004_0021m10
title: RAVE Field 20101004_0021m10

description: A field from the RAVE survey
DOI: 10.17632/nv66f4gjyy.2
title: Data for "Human activities dominated spatial patterns of chlorophyll-a among lakes in east China"

description: This dataset includes the raster dataset of Chl-a retrievals in hundreds of lakes more than l km2 in east China. Also, related meteorological and fertilizers are included in this dataset as a Microsoft excel.
DOI: 10.17632/mk6xvj3sdt.1
title: UCS and permeability dataset for "In–situ quantification of mechanical and permeability properties on outcrop analogues of offshore fractured and weathered crystalline basement: Examples from the Rolvsnes granodiorite, Bømlo, Norway"

description: This dataset reports the permeability and uniaxial compressive strength data presented in "In–situ quantification of mechanical and permeability properties on outcrop analogues of offshore fractured and weathered crystalline basement: Examples from the Rolvsnes granodiorite, Bømlo, Norway" by Ceccato et al. submitted to Marine and Petroleum Geology.
DOI: 10.17876/rave/dr.6/fields/20101004_0243m16
title: RAVE Field 20101004_0243m16

description: A field from the RAVE survey
DOI: 10.17632/mjt2z298jw.1
title: Data for physico-chemical limnological concentrations determination in aquaponic pond

description: Understanding the physico-chemical interactions on outdoor artificial aquaponics pond is the fundamental for effective nutrient dynamics in cultivating fishes and vegetable crops. The current trend of water quality monitoring is through time consuming laboratory experiments or deployment of expensive chemical sensors. This dataset contains water temperature, pH and electrical conductivity sensor-acquired data from temperature perturbed aquaponic pond water samples collected from 5 zones in a 250 cubic meter pond in Morong, Rizal, Philippines, and the corresponding dissolved organic compound namely nitrate, phosphate, and potassium absorbances and concentrations through spectrophotometry in the UV-Vis-NIR spectrum. Codes for principal component analysis in selecting the characteristic activated water bands resembling nutrient biomarkers detection, and the codes for regression based decision tree, recurrent neural network and multigene symbolic regression genetic programming for nutrient prediction were provided.
DOI: 10.17876/rave/dr.6/fields/20101004_0446m66
title: RAVE Field 20101004_0446m66

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20101004_0506m51
title: RAVE Field 20101004_0506m51

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20101004_2028m00
title: RAVE Field 20101004_2028m00

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20101004_2224m40
title: RAVE Field 20101004_2224m40

description: A field from the RAVE survey
DOI: 10.17632/pc8z47jzm5.7
title: Supplemental data for "Differential Histone Distribution Patterns in Induced Asymmetrically Dividing Mouse Embryonic Stem Cells"

description: Those additional supplemental data includes figures, raw image galleries, quantification tables and movie, which are complementary to the main-text figures 1-4 and supplemental figure S1-S4. Validation of the E14TG2a mESC line used in this study. (A) Representative images of the mESC morphology and alkaline phosphatase (AP) staining when cultured in complete medium (CM) with LIF+2i. (B) Cells cultured in N2B27 medium with bFGF/ActivinA for five days show EpiSCs cell morphology and decreased AP staining. (C) Growth curve of mESCs and mEpiSCs, with cell doubling time indicated in the plot. Scale bar in (A) and (B): 100 um. Expression of histone-Dendra2 fusion proteins have no apparent effect on the cell cycle progression of mESCs. (A) Western blot analysis of non-transgenic wild-type (WT) mESCs and transgenic mESCs expressing H3-Dendra2, H4-Dendra2, H2A-Dendra2, H2B-Dendra2 and H3.3-Dendra2, respectively. The sizes of histone proteins are ~15 KD, the sizes for Histone-Dendra2 fusion proteins are ~40 KD, as indicated in the panel. (B) The cell cycle profiles obtained using DNA content analysis (PI staining) with FACS (Fluorescence Activated Cell Sorting). (C) Growth curves of non-transgenic WT-mESCs and each histone-Dendra2 transgenic mESC lines, with cell doubling times indicated in the panel. (D) The percentage of EdU-positive cells with 30-minute EdU pulse labeling in H3-Dendra2, H4-Dendra2, H2A-Dendra2, H2B-Dendra2 and H3.3-Dendra2 transgenic mESCs. (E) The “stemness” identity of the mESC line carrying the H3-Dendra2 transgene, confirmed by immunofluorescent signals for ESC markers, including Nanog, Rex1, Oct4, Sox2 and SSEA-1. Scale bar in (E): 20 um. Schematic depiction of a model for different histone distribution patterns with Wnt3a-induced ACD of mESCs. (A) With Wnt3a bead, non-overlapping histone H3 and H4 regions could be explained by regional conservative mode of nucleosome reassembly during DNA replication, shown as [Model (1) in (E)]. (B) The separable signals are lost in symmetrically dividing mESCs, which could be due to dispersive mode of nucleosome reassembly during DNA replication, shown as [Model (2) in (E)]. (C) The symmetric histone distribution patterns of H2A and H2B during ACD of mESCs. (D) DNA replication-independent model, which applies to H3.3. (E) Distinct nucleosome reassembly modes [(1) conservative versus (2) dispersive] during DNA replication could have regional specificities: the conservative model could occur at gene regions that need to be differentially expressed in the two daughter cells derived from Wnt3a-induced asymmetrically dividing mESCs, such as stemness genes, differentiation genes, or Wnt signaling pathway target genes. On the other hand, for those genes whose expression is similar between the two daughter cells, such as housekeeping genes and genes silenced in mESCs, the dispersive model could be applied to make sure the sister chromatids inherit the identical epigenetic information.
DOI: 10.17632/csn22g48w3.2
title: Consequences of trace metal cocktail exposure in zebra finch (Taeniopygia guttata) and effect of calcium supplementation

description: Trace metal elements are significant stressors in urban areas. Their harmful effects on physiological parameters are demonstrated, but current laboratory studies are not representative of wild chronic exposure to a trace metal cocktail. Calcium can reduce the accumulation and toxicity of several metals, but soil acidification in cities leads to a decrease in bioavailability of this element. The objective of this study was to investigate the accumulation and toxicity of a trace metal cocktail representative of urban exposure on passerine birds, and test the importance of calcium availability on these toxic effects. We exposed zebra finches (Taeniopygia guttata) to a cocktail of metals and metalloids in drinking water, with or without calcium supplementation. We monitored the concentration of metals in the blood and feathers, and their effects on oxidative status, and telomere length. The metal cocktail led to higher concentration of all elements in the feathers, and of arsenic and lead in the blood. Birds with a higher concentration of cadmium, arsenic and lead in the feathers had shorter telomeres, but no impact of the cocktail was detected on the oxidative status. Birds of the ‘calcium’ group and the ‘calcium and metal’ group accumulated higher concentrations of zinc, chromium and nickel in feathers. The ‘calcium and metal’ group also accumulated lower concentrations of arsenic and lead in feathers compared to the ‘metal’ group. Our results suggests that chronic exposure to a cocktail of metals at low concentrations has deleterious effects on birds, which can be limited through calcium intake. Methods 4 groups of 10 birds were exposed to 4 treatments: 'Ctrl’= control group with low-Ca diet and no trace metal element (TME), ‘TME’= birds with low–Ca diet exposed to a TME cocktail, ‘Ca’= rich-Ca diet and no TME and ‘TME+Ca’= rich-Ca diet and TME cocktail. The TME cocktail contained both essential TME (i.e, necessary for biological process) and non-essential metals and metalloid: 10 ppm of Pb , 0.7 ppm of Cr, 1 ppm of As, 100 ppm of Zn, 24 ppm of Cu, 0.5 ppm of Ni, 0.2 ppm of Co, and 0.1 ppm of Cd. At day 0, tarsus length was measured with a calliper (±0.1 mm). Every two weeks we measured body mass (±0.1 g) with a precision scale and collected 100 µL of blood from brachial vein (in 2 tubes of 50 µL) with heparinized capillary to measure physiological parameters (free, oxidised and total glutathione, glutahione peroxidase activity, dosage of reactive oxygen metabolites, and relative telomere length) and concentrations of metals (ICP-MS analyses). At day 0 and 29 we also collected the right fourth primary feather for metal analyses (ICP-MS analyses). For blood, several samples had metal concentrations under the limit of detection. To take these data into account, we used a statistical method for left censored data with a specific package : NADA package which requires pre-processing of data. It corresponds to the last 16 columns of this file.
DOI: 10.17876/rave/dr.6/fields/20101005_0020m05
title: RAVE Field 20101005_0020m05

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20101005_0234m04
title: RAVE Field 20101005_0234m04

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20101005_0403m24
title: RAVE Field 20101005_0403m24

description: A field from the RAVE survey
DOI: 10.17632/33nfbd55ph.1
title: Domestic physical violence against children in urban and suburban areas in Vietnam from adults' perspectives and children's viewpoints

description: DATASET FOR THE STUDY TITLED: Domestic physical violence against children in urban and suburban areas in Vietnam: what adults view and what children perceive? The data show the perspectives of Vietnamese adults and children inhabiting urban and suburban areas about domestic physical violence against children in Vietnam, through a survey with seventy adults and a semi-structured interview with four children aged seventeen. The data show that most adults and children participating in the study view children as being innocent and incompetent, as well as in need of protection. Moreover, physical violence against children in the family is considered normal and acceptable for a large number of participants, including both adults (half of the total number) and children. The people disapproving of beating children emphasize the consequence of the activity, especially, negative impacts on children’s psychology; while the people approving mostly highlight the purpose of the activity, the circumstance that the activity happens, and the way of practice. There is a significant difference between males and females in their agreement with the activity of beating children in which males tend to support this activity more than females. Furthermore, although parents’ physical violence on children is believed to educate children, the actual reason for this behavior is adults’ incompetence of emotional regulation, making it become an irrational activity.
DOI: 10.17876/rave/dr.6/fields/20101005_2010m09
title: RAVE Field 20101005_2010m09

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20101005_2222m11
title: RAVE Field 20101005_2222m11

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20101006_0037m39
title: RAVE Field 20101006_0037m39

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20101006_0437m40
title: RAVE Field 20101006_0437m40

description: A field from the RAVE survey
DOI: 10.17632/8ysxtyf8p2.6
title: RecBov51c

description: Image Dataset with 51 classes the Pantaneiro Cattle. The images in the dataset were collected between 1:50pm and 4:48pm on January 25, 2019 at the Aquidauana Pantanal Cattle Conservation Center (NUBOPAN) in the State University of Mato Grosso do Sul/Aquidauana University Unit (UEMS/UUA). This is located in the municipality of Aquidauan/MS which is in the Pantanal region of Mato Grosso do Sul. The geographical coordinates were as follows: latitude 20º28' S, longitude 55º48' W and an altitude of 149 meters. In this study, 51 Pantanal cattle units of both sexes and various ages were used. This is equivalent to 10% of the existing population for this breed. Images were collected using the Digital Video Recorder (DVR) set MIDI MD-1004NS MD-DVR41. The image quality was AHD 720p and the recording capacity was 1Tb. Four cameras were positioned at the exit outlet to collect images of the back, profile, side, and face. Images of the cattle’s backs were collected using camera 1. This was positioned approximately 2.5 meters high with an inclination angle of 30º. The other cameras were positioned according to the sketch at the same height as the pickets. The videos collected were stored in the DVR, transferred to computers, analyzed, and divided into 212 smaller videos. Images of the cattle were then extracted from these videos. The dataset was formed using 27,849 images of Pantanal cattle and the number of images obtained varied according to filming to time of each cattle.
DOI: 10.17876/rave/dr.6/fields/20101010_0124m59
title: RAVE Field 20101010_0124m59

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20101010_2010m09
title: RAVE Field 20101010_2010m09

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20101010_2233m07
title: RAVE Field 20101010_2233m07

description: A field from the RAVE survey
DOI: 10.17632/m4zdf3mg8c.1
title: Transcriptomics of SARS-CoV-2’s coinfection potential: implications for the host targetome

description: SARS-CoV-2 coinfection with other pathogens and their interactions is increasingly recognized in the literature as potential determinants of COVID-19 phenotypes. A direct implication of this concept is whether and which co-pathogens function synergistically on the transcriptomic level with SARS-CoV-2. Using a list of differentially expressed genes following SARS-CoV-2 infection extracted, gene set enrichment analysis revealed HSV1, EBV, HIV1, IAV and Strep. Pneumoniae, among other pathogens (FDR&lt;0.05). These results provide insight into the synergism between SARS-CoV-2 and other pathogens.
DOI: 10.17632/5cxw9f5ngz.2
title: Soil Metagenomics Analysis in Relation to Basal Stem Rot Disease

description: 16S Metagenomics soil analysis was conducted in three different estates (Kam Cheong Plantation, Ladang Sahabat, Warisan Gagah) in Sabah, Malaysia to understand the soil microbial community in disease free, low and high basal stem rot disease respectively.
DOI: 10.17632/v6pymtdyck.1
title: SARS-CoV-2 Host interactomics based gene-drug signatures

description: Gene-Drug signatures derived from interactome analysis of two published SARS-CoV-2 infection induced gene signatures.
DOI: 10.17876/rave/dr.6/fields/20101016_0329m16
title: RAVE Field 20101016_0329m16

description: A field from the RAVE survey
DOI: 10.17632/c7zvggmh78.1
title: 3D-microbattery architectural design optimization using automatic geometry generator and transmission-line model. Miyamoto et al

description: 200,000 geometry data generated by our optimization system and associated electrode volumes and internal resistances (Fig. 4 = Figs. S4, S5, S6, and S7)
DOI: 10.17632/5y9wj7w4bb.1
title: Data for the Use of Radiocarbon Labelling for Screening Iron Deficiency Tolerance of Soybean (Glycine max (L.) Merr.) Genotypes
DOI: 10.17876/rave/dr.6/fields/20101016_0346m75
title: RAVE Field 20101016_0346m75

description: A field from the RAVE survey
DOI: 10.17632/9zdh7xt3ks.1
title: BRS-D-20-00320

description: We measured the time courses of interhemispheric facilitation and inhibition with a conditioning-test paired-pulse magnetic stimulation paradigm in 12 subjects. There are four spread sheets in the excel file. The first sheet (subject) listed the information about the subjects we tested. The stimulus intensities used in the experiments were also listed. The second sheet (rough) listed the result of a time course tested with interstimulus interval set at 1 ms resolution. The other two sheets (facilitation precise and inhibition precise) showed the results testing interhemispheric facilitation and inhibition with interstimulus intervals set at 0.1 ms resolution.
DOI: 10.17876/rave/dr.6/fields/20101016_0436m35
title: RAVE Field 20101016_0436m35

description: A field from the RAVE survey
DOI: 10.5281/zenodo.3933088
title: Complex multi-trait responses to multivariate environmental cues in a seasonal butterfly

description: Dataset for 'Complex multi-trait responses to multivariate environmental cues in a seasonal butterfly'.
DOI: 10.17876/rave/dr.6/fields/20101016_2044m61
title: RAVE Field 20101016_2044m61

description: A field from the RAVE survey
DOI: 10.5281/zenodo.3933087
title: Complex multi-trait responses to multivariate environmental cues in a seasonal butterfly

description: Dataset for 'Complex multi-trait responses to multivariate environmental cues in a seasonal butterfly'.
DOI: 10.17876/rave/dr.6/fields/20101016_2116m71
title: RAVE Field 20101016_2116m71

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20101017_0005m64
title: RAVE Field 20101017_0005m64

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20101017_0007m69
title: RAVE Field 20101017_0007m69

description: A field from the RAVE survey
DOI: 10.17632/8ysxtyf8p2.3
title: RecBov51c

description: Image Dataset with 51 classes the Pantaneiro Cattle. The images in the dataset were collected between 1:50pm and 4:48pm on January 25, 2019 at the Aquidauana Pantanal Cattle Conservation Center (NUBOPAN) in the State University of Mato Grosso do Sul/Aquidauana University Unit (UEMS/UUA). This is located in the municipality of Aquidauan/MS which is in the Pantanal region of Mato Grosso do Sul. The geographical coordinates were as follows: latitude 20º28' S, longitude 55º48' W and an altitude of 149 meters. In this study, 51 Pantanal cattle units of both sexes and various ages were used. This is equivalent to 10% of the existing population for this breed. Images were collected using the Digital Video Recorder (DVR) set MIDI MD-1004NS MD-DVR41. The image quality was AHD 720p and the recording capacity was 1Tb. Four cameras were positioned at the exit outlet to collect images of the back, profile, side, and face. Images of the cattle’s backs were collected using camera 1. This was positioned approximately 2.5 meters high with an inclination angle of 30º. The other cameras were positioned according to the sketch at the same height as the pickets. The videos collected were stored in the DVR, transferred to computers, analyzed, and divided into 212 smaller videos. Images of the cattle were then extracted from these videos. The dataset was formed using 27,849 images of Pantanal cattle and the number of images obtained varied according to filming to time of each cattle.
DOI: 10.17876/rave/dr.6/fields/20101017_0436m04
title: RAVE Field 20101017_0436m04

description: A field from the RAVE survey
DOI: 10.17876/rave/dr.6/fields/20101017_0552m36
title: RAVE Field 20101017_0552m36

description: A field from the RAVE survey
DOI: 10.17632/8ysxtyf8p2.2
title: RecBov51c

description: Image Dataset with 51 classes. Each class equals one bovine.
DOI: 10.17632/8ysxtyf8p2.1
title: RecBov51c

description: Image Dataset with 51 classes. Each class equals one bovine.
DOI: 10.17876/rave/dr.6/fields/20101017_0615m20
title: RAVE Field 20101017_0615m20

description: A field from the RAVE survey
DOI: 10.17632/p7g8fz82rk.1
title: Radial Intersection Count Image evaluation results (for reproduction purposes)

description: A set of results that was obtained as part of the evaluation done in the paper titled "Radial Intersection Count Image: a Clutter Resistant 3D Shape Descriptor". The data is made available here, in conjunction with a source code repository that can be found here: https://github.com/bartvbl/Radial-Intersection-Count-Image-reproduction These combined will allow all results presented in the paper to be reproduced.
DOI: 10.17876/rave/dr.6/fields/20101017_2245m49
title: RAVE Field 20101017_2245m49

description: A field from the RAVE survey