cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/jbz2s9xsmv
title: MyElas: An automatized tool-kit for high-throughput calculation, post-processing and visualization of elasticity and related properties of solids

description: Elasticity is one of the most fundamental mechanical properties of solid. In high-throughput design of advanced materials, there is an imperative demand for the capability to quickly calculate and screen a massive pool of candidate structures. A fully automatized pipeline with minimal human intervention is the key to provide high efficiency to achieve the goal. Here, we introduce a tool-kit MyElas that aims to address this problem by forging all pre-processing, elastic constant and other related property calculations, and post-processing into an integrated framework that automatically performs the assigned tasks to drive data flowing through parallelized pipelines from input to output. The core of MyElas is to calculate the second and third order elastic constants of a solid with the energy-strain method from first-principles. MyElas can auto-analyze the elastic constants, to derive other related physical quantities. Furthermore, the tool-kit also integrates a visualization function, which can, for example, plot the spatial anisotropy of elastic modulus and sound velocity of monocrystalline. The validity and efficiency of the toolkit are tested and bench-marked on several typical systems.
DOI: 10.6084/m9.figshare.12456671.v1
title: epidemiological_data.csv

description: This data includes number of cumulative confirmed, fatality, active cases, and total test conducted during the first 100 days of COVID-19 in Seoul, South Korea.
DOI: 10.6084/m9.figshare.14710011.v1
title: Supplementary Material for: SARC-F Is Inaccurate to Identify Geriatric Rehabilitation Inpatients at Risk for Sarcopenia: RESORT

description: <b><i>Introduction:</i></b> Sarcopenia is highly prevalent in geriatric rehabilitation inpatients; screening using the Strength, Assistance in walking, Rise from a chair, Climb stairs, Falls history questionnaire (SARC-F) has been recommended. This study assessed the diagnostic accuracy of the SARC-F in identifying sarcopenia according to the European Working Group on Sarcopenia in Older People (EWGSOP), EWGSOP2, and Asian Working Group for Sarcopenia (AWGS) definitions in geriatric rehabilitation inpatients. <b><i>Methods:</i></b> REStOring health of acutely unwell adulTs (RESORT) is an observational, longitudinal cohort of geriatric rehabilitation inpatients. The SARC-F was completed for 2 time-points, status at preadmission (1 month before admission) and at admission; a score ≥4 was considered at risk for sarcopenia. Muscle mass (bioelectrical impedance analysis), handgrip strength (handheld dynamometry), and gait speed (4-m walk test) were measured at admission. Diagnostic accuracy was determined by sensitivity, specificity, and area under the curve (AUC). <b><i>Results:</i></b> The sarcopenia prevalence (<i>n</i> = 290, median age 84.0 years [IQR 79.0–89.0], 56.9% female) was 40.3% (EWGSOP1), 25.4% (EWGSOP2), and 38.8% (AWGS). For preadmission and admission status, respectively, the SARC-F identified 67.9 and 82.1% (EWGSOP), 66.0 and 81.0% (EWGSOP2), and 67.5 and 81.6% (AWGS) inpatients at risk for sarcopenia. The SARC-F showed fair sensitivity (67–74%), poor specificity (32–37%), and poor AUC (0.411–0.474) to identify inpatients at risk for sarcopenia at preadmission status, and fair-good sensitivity (79–84%), poor specificity (17–20%), and poor AUC (0.401–0.432) to identify inpatients at risk for sarcopenia at admission, according to EWGSOP, EWGSOP2, and AWGS definitions. <b><i>Conclusion:</i></b> The SARC-F showed poor diagnostic accuracy in identifying sarcopenia in geriatric rehabilitation inpatients. Assessment of sarcopenia is recommended without screening.
DOI: 10.6084/m9.figshare.12600203.v1
title: Supplementary Material for: Predictive Factors for Changes in Quality of Life after Steroid Treatment for Active Moderate-to-Severe Graves’ Orbitopathy: A Prospective Trial

description: <b><i>Objectives:</i></b> To investigate the predictive factors for changes in the quality of life (GO-QoL) of patients with Graves’ orbitopathy (GO) prior to and after specific treatment. <b><i>Methods:</i></b> A prospective follow-up study was conducted at an academic tertiary referral orbital center with a joint thyroid-eye clinic on 100 consecutive patients with GO. Before and after the standard 12-week course of weekly intravenous methylprednisolone (cumulative dose 4.5 g), the GO-QoL questionnaire provided by the European Group on Graves’ Orbitopathy (EUGOGO) was completed. Endocrine and ophthalmic assessments were performed at each visit. <b><i>Results:</i></b> All patients were biochemically euthyroid and untreated for GO at baseline and presented with active and moderate-to-severe disease. Both GO-QoL subscales (visual functioning [VF] and appearance [AP]) significantly increased after immunosuppressive therapy and showed a sustained improvement for 6 months. At baseline, demographic variables (sex, age, and smoking) influenced QoL in the stepwise linear regression (<i>p</i> &lt; 0.01, adjusted <i>R</i><sup>2</sup> = 0.24 for VF and <i>p</i> &lt; 0.01, adjusted <i>R</i><sup>2</sup> = 0.21 for AP). In contrast, 6 months after treatment, the improved QoL was now exclusively associated with ophthalmic parameters (<i>p</i> &lt; 0.01, adjusted <i>R</i><sup>2</sup> = 0.47 for VF; <i>p</i> &lt; 0.01, adjusted <i>R</i><sup>2</sup> = 0.23 for AP). <b><i>Conclusions:</i></b> Predictive factors for GO-QoL differed not only between the 2 subscales but also before and after the first treatment of GO.
DOI: 10.17632/56tghvgvxg
title: Soil dataset of cotton fields in arid areas

description: Soil physicochemical properties and microbial sequencing data of cotton fields with different continuous cropping years
DOI: 10.6084/m9.figshare.22352914.v1
title: Supplementary Material for: Design and methodological issues of within-person (split-body) randomized controlled trials evaluating a topical treatment: A systematic review

description: Background Topical drugs are often used as first-line treatment for dermatological conditions. A within-person design may then be well adapted: it consists of randomizing lesions/body sites rather than patients, which are then concomitantly treated by the different drugs compared, reducing inter-group variability and therefore requiring fewer patients than the classical parallel-group trial. Objectives The aim of this review was to provide a methodological overview of within-person randomized trials (WP-RCTs) in dermatology. Methods We searched for eligible trials published between 2017 and 2021 in MEDLINE, Embase and Central in dermatology journals and the 6 highest-impact-factor general medical journals. Two authors selected publications and extracted data independently. Results From 1034 articles identified, we included 54 WP-RCTs, mainly for acne vulgaris, psoriasis, actinic keratosis and atopic dermatitis. In most of the trials, patients had only 2 lesions/body sites. In none of the trials did we detect a potential carry-across effect (known to be the major methodological problem in WP-RCTs). Twelve studies reported a care provider applying the treatment, and in 26 studies, the patients themselves applied the treatment. Finally, we also highlight statistical issues for the statistical analysis: overall, 14 (26.9%) studies used a test for independent observations, thus ignoring the between-lesion correlation. Conclusion Our systematic review highlights that despite the publication of the CONSORT checklist extension for WP-RCTs in 2017, this design is rarely used, and when it is, there are methodological and reporting concerns.
DOI: 10.6084/m9.figshare.24112587.v1
title: Tachycardia-induced metabolic rewiring as a driver of contractile dysfunction

description: Source data and uncropped blots for main figures, extended data figures and supplementary figures for article "Tachycardia-induced metabolic rewiring as a driver of contractile dysfunction".
DOI: 10.6084/m9.figshare.27098308.v1
title: Data.xlsx

description: 这是我硕士论文的原始数据。
DOI: 10.17632/gs6wxvcvs6
title: Data from fluorescence spectroscopy, isothermal titration calorimetry, voltammetry, and vesicle electrodeformation for characterisation of lipid membranes in the presence of VV-hemorphin-5 analogues with nociceptive activity

description: Datasets contain raw and analysed data on physicochemical parameters of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) membranes containing VV-hemorphin-5 (Val-Val-Tyr-Pro-Trp-Thr-Gln) and analogues, modified at position 1 and 7 by the natural amino acid isoleucine or the non-proteinogenic 2-aminoisobutyric, 2,3-diaminopropanoic or 2,4-diaminobutanoic amino acids. Peptides were chosen and their notation was kept according to [P. Todorov, P. Peneva, D. Pechlivanova, S. Georgieva, E. Dzhambazova, Synthesis, characterization and nociceptive screening of new VV-hemorphin-5 analogues, Bioorganic & Medicinal Chemistry Letters, 28 (2018) 3073-3079.]. 
Dataset 1 provides analysed data from Laurdan and di-8-ANEPPS fluorescence spectroscopy of large unilamellar vesicles (LUV) in the presence of valorphins. Laurdan normalised spectra and general polarisation data are reported as well as di-8-ANEPPS fluorescence intensity ratio and POPC membrane dipole potential of all valorphins studied.
Dataset 2 contains analysed data on specific electrical capacitance of POPC-valorphin membranes acquired from frequency-dependent deformation of giant unilamellar vesicles (GUV) in AC field.  For each membrane composition studied vesicle radii are given together with the intermediate "critical" frequencies of the AC field applied at which vesicles assume quasispherical shapes according to [P.F. Salipante, R.L. Knorr, R. Dimova, P.M. Vlahovska, Electrodeformation method for measuring the capacitance of bilayer membranes, Soft Matter, 8 (2012) 3810-3816.]. Information about the conductivity of the aqueous solutions is included. Dataset 3 describes analysed electrokinetic data of POPC-valorphin LUVs including vesicles sizes and zeta potential values. Dataset 4 reports cyclic voltammetry data of valorphin analogues in supporting electrolyte (0.1 mol L-1 phosphate buffer solution, pH 6.78 ± 0.01) recorded on a Metrohm 797 (Metrohm, Switzerland) VA trace analyser and a 797 VA stand with a Pt-disk electrode with 3 sq. mm area as a working electrode, Ag/AgCl (3 mol/L KCl) as a reference electrode and a platinum wire serving as a counter electrode. Voltamperograms were recorded in square wave voltammetric (SWV) mode at 50 Hz frequency and 2 mV potential increments corresponding to scan rate of 100 mV/s. The required aliquotes of the standard analyte solution (50-100 µL) were measured by subsequently adding them in the solution of the supporting electrolyte. Data are reported as the mean value of three independent measurements. 
Dataset5 contains isothermal titration calorimetry (ITC) raw data of injection heats Q of POPC LUVs' dilution in valorphin aqueous solutions. Blank data are provided from control measurements in bidistilled water. Lipid vesicles as aliquots of 2 µL were injected in 25 steps with 300 s interval and stirring speed of 250 rpm.
DOI: 10.6084/m9.figshare.24902463.v2
title: <b>Early thermal histories of IAB main group irons: Insights from Ca-phosphates in Campo del Cielo and Nantan</b>

description: The model abundances of Campo del Cielo, detailed EPMA data and LA-ICPMS data are provided here.
DOI: 10.6084/m9.figshare.26343820.v1
title: Engaging online student through flipped classroom A case study during pandemic.xlsx

description: Flipped classroom (FC) is one of the blended learning models adopted by educators when combining both face-to-face and online learning delivery mode. The aim of this study is to investigate the learning experience and engagement of students by applying a revised FC model in reference to past scholar’s FC model in fully-online classroom setting during pandemic. This study is a quantitative research employing questionnaire survey for data collection. Online questionnaire has been arranged to gather responses from students as the unit was conducted solely online during data collection period. Student learning experience and online student engagement are collected after the FC.
DOI: 10.6084/m9.figshare.8859302.v1
title: 16S ESVs phyloseq object

description: A R object file (.rds) containing a phyloseq object of UNOISE3 identified 16S exact sequence variants (ESVs) across 15 soil sites in New Zealand.
DOI: 10.15468/dl.tr9yh6
title: Occurrence Download

description: A dataset containing 1031678 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "Year is 2004",
 "Month is May"
 ]
}

 The dataset includes 1031678 records from 1284 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009399-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/9hhv5vnc4m
title: Ultra-refractory Metal Grains

description: Data pertaining to GCA Manuscript. This work is focused on coordinated use to electron microscopy techniques and informed thermodymanic modeling to understand the origin of ultra-refractory metal grains from CAIs. The electron microscope images and maps are provided as TIFF files. The database and code for the thermodynamic modeling are provided as separate files. Please read the "Information - Read Me" file before accessing the files pertaining to thermodynamic modeling.
DOI: 10.25381/cput.24597435.v2
title: Modelling and design issues of model predictive current control of a voltage source converter

description: This research implements a Model Predictive Current Control scheme to monitor the output current for a three-phase, two-level VSC. A Finite State-Model Predictive Current Control technique will be presented for a three-phase, two-level VSC. Finite State Model Predictive Current Control proved to be a viable control method for power converters. One of several key benefits is the ability to monitor several system parameters with a single control rule by combining the system parameters with correct weighting factors. Nevertheless, these coefficients are determined through empirical calculations in the present leading-edge research. Thus far, no analytical or numerical method has been devised to obtain an ideal resolution. Furthermore, the empirical technique is not often concise, and no processes have already been identified. The whole research presents a method to a set of instructions that reduces the unpredictability of this process. Firstly, FS-MPCC will be introduced to decrease the computation effort for Model Predictive Current Control as well as to forecast future load current value for all eight generated potential switching states produced by the converter. secondly, this study classifies various cost functions and compares the performance of a system using delay compensation to a system without delay compensation. The objective is to assess the influence of delay compensation on the desired outcome and overall system performance. The various phases of the empiric process are then described. Lastly, the performance assessment of the FS-MPCC for a three-phase, two-level voltage source converter is reviewed in terms of power quality, dynamic performance, and tracking behavior. Modeling and simulation will be performed using the programs MATLAB / Simulink.Ethics Reference number: 2021FEREC-STD-03
DOI: 10.6084/m9.figshare.19127186.v1
title: Flashier Floods over the Conterminous US under a Changing Climate

description: This data repo stores data used to produce figures in a publication - Flashier Floods over the Conterminous US under a Changing Climate<br>Description of list of files:rain.ctl.csv - rainfall rates simulated by the convection-permitting climate model under retrospective climaterain.pgw.csv - rainfall rates simulated by the convection-permitting climate model under future climate<br>flow.ctl.csv - streamflow simulated by EF5 under retrospective climate (aggregated to US HUC8 basins)<br>flow.pgw.csv - streamflow simulated by EF5 under future climate (aggregated to US HUC8 basins)CPM_ctl.zip - rainfall-flood characteristics (e.g., base flow, flood duration, flood volume, rainfall volume, time-to-peak, etc.) under retrospective climateCPM_pgw.zip - rainfall-flood characteristics under a warmer climateAll_USGS_Observed_ReturnPeriod_Q_and_NWS_FloodQ: Flow return period from observed streamflow data (used to validate flash flood indices)
DOI: 10.6084/m9.figshare.25117775.v1
title: Supplementary Material for: Longitudinal Growth Trajectories in Children with Cow’s Milk Allergy: Effects of Elimination Diet and Post-Termination Period

description: Introduction: The primary dietary approach for managing cow's milk allergy (CMA) is the elimination diet. We aimed to compare the growth patterns of children with CMA during and after the elimination diet with healthy peers and identify influencing factors.
Methods: We compared 74 CMA children with age-matched healthy peers. Anthropometric data were collected during the third month of cow milk elimination diet (T1), three months after diet cessation (T2), and after ≥3 months of normal diet (T3). Control group measurements coincided. Nutrient intake was assessed by a 3-day record, and patient lab results were noted at T3.
Results: CMA children had consistently lower weight-for-age (WFA) and height-for-age (HFA) z-scores than controls. WtHt z-score of patients were lower than those of the healthy group at T2. HC z-scores of patients were lower than those of the healthy group at T0, T2, and T3. At T3, the HFA z-score of the CME group demonstrated a negative correlation with the duration of the elimination diet. (p=0.045). Inadequate intake of energy, vitamins A, E, B1, B6, C, folic acid, magnesium, and iron was significantly higher in CMA children (p&lt;0.05). T3 WFA z-score correlated positively with fiber, vitamin B1, magnesium, and iron intake (p&lt;0.05). T3 WtHt showed a positive moderate correlation with energy, protein, vitamin E, vitamin B1, vitamin B2, vitamin B6, calcium, magnesium, phosphor, iron intake (p&lt;0.05).
Conclusions: Post-elimination diet, children with CMA need sustained monitoring and potentially micronutrient supplementation to match healthy peers' growth.
DOI: 10.6084/m9.figshare.4996193.v1
title: Supplementary Material for: The Peptidoglycan Recognition Proteins PGRPLA and PGRPLB Regulate Anopheles Immunity to Bacteria and Affect Infection by Plasmodium

description: Peptidoglycan recognition proteins (PGRPs) form a family of immune regulators that is conserved from insects to mammals. In the malaria vector mosquito <i>Anopheles</i><i>coluzzii</i>, the peptidoglycan receptor PGRPLC activates the immune-deficiency (Imd) pathway limiting both the microbiota load and <i>Plasmodium</i> infection. Here, we carried out an RNA interference screen to examine the role of all 7 <i>Anopheles</i> PGRPs in infections with <i>Plasmodium berghei</i> and <i>P. falciparum</i>. We show that, in addition to PGRPLC, PGRPLA and PGRPS2/PGRPS3 also participate in antiparasitic defenses, and that PGRPLB promotes mosquito permissiveness to <i>P. falciparum</i>. We also demonstrate that following a mosquito blood feeding, which promotes growth of the gut microbiota, PGRPLA and PGRPLB positively and negatively regulate the activation of the Imd pathway, respectively. Our data demonstrate that PGRPs are important regulators of the mosquito epithelial immunity and vector competence.
DOI: 10.6084/m9.figshare.8236541.v2
title: Discovery ofDiscovery of a potent Histone Deacetylase (HDAC) 3/6 selective dual inhibitor

description: Molecular models of compound 25d in complex with HDAC1,2,3,6, DNMT, G9a
DOI: 10.15468/dl.r496s5
title: Occurrence Download

description: A dataset containing 1562304 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "Year is 2004",
 "Month is June"
 ]
}

 The dataset includes 1562304 records from 1393 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009397-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57907/mirri/uwdpha
title: MIRRI0071687

description: Organism type: Filamentous Fungi ; Taxon name: Chaetomella oblonga ; Collection: CBS 113709 ; Country: Portugal
DOI: 10.57907/mirri/v2rvz9
title: MIRRI0071706

description: Organism type: Filamentous Fungi ; Taxon name: Cladosporium cladosporioides ; Collection: CBS 113739
DOI: 10.57907/mirri/vaxoeg
title: MIRRI0071710

description: Organism type: Filamentous Fungi ; Taxon name: Cladosporium asperulatum ; Collection: CBS 113744
DOI: 10.57907/mirri/wjpbzs
title: MIRRI0071634

description: Organism type: Filamentous Fungi ; Taxon name: Aspergillus filifer ; Collection: CBS 113636 ; Country: Slovenia
DOI: 10.57907/mirri/yaeuqu
title: MIRRI0071811

description: Organism type: Filamentous Fungi ; Taxon name: Phaeoacremonium parasiticum ; Collection: CBS 113936 ; Country: Spain
DOI: 10.57907/mirri/yci027
title: MIRRI0071726

description: Organism type: Filamentous Fungi ; Taxon name: Valsa rubi ; Collection: CBS 113801 ; Country: Sweden
DOI: 10.3535/ftc-1pj-mp0
title: Bastardiopsis (K. Schum.) Hassl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/gzp-18w-v8v
title: Arabis hirsuta (L.) Scop.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.57907/mirri/0jkqxt
title: MIRRI0071662

description: Organism type: Filamentous Fungi ; Taxon name: Aspergillus quadrilineatus ; Collection: CBS 113684
DOI: 10.57907/mirri/1a1gqu/xzvblw
title: MIRRI0071642.json

description: Strain json file
DOI: 10.57907/mirri/3yiysr/spxnvh
title: MIRRI0071478.json

description: Strain json file
DOI: 10.57907/mirri/6zln4a/lagumm
title: MIRRI0071733.json

description: Strain json file
DOI: 10.57907/mirri/7rlcit/7tqait
title: MIRRI0071402.json

description: Strain json file
DOI: 10.57907/mirri/9p5zyp/bckpek
title: MIRRI0071894.json

description: Strain json file
DOI: 10.57907/mirri/9vwuho
title: MIRRI0071707

description: Organism type: Filamentous Fungi ; Taxon name: Cladosporium cladosporioides ; Collection: CBS 113740
DOI: 10.57907/mirri/asood2/wzqx4v
title: MIRRI0071784.json

description: Strain json file
DOI: 10.57907/mirri/brlkzr
title: MIRRI0071416

description: Organism type: Filamentous Fungi ; Taxon name: Cercosporella virgaureae ; Collection: CBS 113304 ; Country: South Korea
DOI: 10.57907/mirri/c6exur/vhixrb
title: MIRRI0071782.json

description: Strain json file
DOI: 10.57907/mirri/cgbqmf/8tyxxa
title: MIRRI0071430.json

description: Strain json file
DOI: 10.57907/mirri/cqifr6/euramx
title: MIRRI0071945.json

description: Strain json file
DOI: 10.57907/mirri/eskb8x
title: MIRRI0071803

description: Organism type: Filamentous Fungi ; Taxon name: Hormographiella verticillata ; Collection: CBS 113926 ; Country: France
DOI: 10.57907/mirri/goqljn
title: MIRRI0071730

description: Organism type: Filamentous Fungi ; Taxon name: Trichophaea abundans ; Collection: CBS 113808 ; Country: Norway
DOI: 10.57907/mirri/hemphl
title: MIRRI0071666

description: Organism type: Filamentous Fungi ; Taxon name: Coremiella cubispora ; Collection: CBS 113688 ; Country: Portugal
DOI: 10.57907/mirri/hmbbgh/pwhnzv
title: MIRRI0071793.json

description: Strain json file
DOI: 10.57907/mirri/hwwfg1/vqd6um
title: MIRRI0071723.json

description: Strain json file
DOI: 10.57907/mirri/i7tybq
title: MIRRI0071736

description: Organism type: Filamentous Fungi ; Taxon name: Ophiobolus disseminans ; Collection: CBS 113818 ; Country: Sweden
DOI: 10.57907/mirri/i7tybq/hc4e5u
title: MIRRI0071736.json

description: Strain json file
DOI: 10.57907/mirri/jbumok/doz5p9
title: MIRRI0071738.json

description: Strain json file
DOI: 10.57907/mirri/jkogrb/lu1lc2
title: MIRRI0071693.json

description: Strain json file