cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5397205.v1
title: data for experiments and simulations.pdf

description: The data is for the paper on plos one named 'Preliminary research on flow rate and free surface of the accelerator driven subcritical system gravity-driven dense granular-flow target'.<br>
DOI: 10.17632/cxrsbh28df
title: EcSeg-i: Pan-Cancer Analysis of Oncogene Amplification in Interphase Cells

description: Dataset for figures in EcSeg-i: Pan-Cancer Analysis of Oncogene Amplification in Interphase Cells.
DOI: 10.17632/gxbmjzdf35
title: The Effects of High-Intensity Interval Training and Moderate-Intensity Continuous Training for Heat Acclimation on Resting Thermoregulation and Heart Rate Variability

description: The data consist of resting heart rate varibility, heart rate, skin temperature and core temperature in hot temperature conditions (32°C, 40% RH) or normal temperature conditions (23°C, 40% RH) before and after a 5days MICT or HIIT intervention.
This study examined the effects of high-intensity interval training (HIIT) and moderate-intensity continuous training (MICT) during a 5-day heat acclimatization protocol (HA) on resting thermoregulation and heart rate variability (HRV).Forty-eight male university students participated in this study.Participants with maximal aerobic power (Pmax) and training experience were divided into four groups using an online randomizer: MICT in normal ambient temperatures (N-MICT), MICT in hot ambient temperatures (H-MICT), HIIT in normal ambient temperatures (N-HIIT), and HIIT in hot ambient temperatures (H-HIIT). In this study, we found that A 5-day HIIT HA leads to more physiological adaptations compared to MICT HA, suggesting that HIIT HA may be a valuable preventive approach for heat stroke prevention.
DOI: 10.21942/uva.24041787.v1
title: Corrected coral photosynthesis to respiration ratio data

description: Corrected photosynthesis to respiration ratios - see Corrigendum for the paper
DOI: 10.6084/m9.figshare.12179085.v3
title: Assessing and addressing the social determinants of noncommunicable diseases in primary care: a systematic review - Supplementary web appendix

description: PRISMA checklist, risk of bias assessment, and Medline search strategy for 'Assessing and addressing the social determinants of noncommunicable diseases in primary care: a systematic review', WHO Bulletin special issue on Primary Health Care, by Allen LA, Smith RW, Simmons-Jones F, Roberts N, Honney R, Currie J.
DOI: 10.6084/m9.figshare.23284298.v2
title: Meta-analysis: eDNA vs conventional surveys

description: R script and data retrieved for the literature to conduct meta-analysis to compare detection of mammals between environmental DNA and conventional surveys for biodiversity inventories.
DOI: 10.6084/m9.figshare.4654438.v1
title: Climate_Data

description: These excel files and scripts were used to process the climate data for the coffee yield simulations as described in Verhage et al. (2017) (still in process of submission). The climate data originates from a database as described in:Xavier, A.C., King, C.W. & Scanlon, B.R., 2015. Daily gridded meteorological variables in Brazil (1980-2013). <i>International Journal of Climatology</i>, 2659(October 2015), pp.2644–2659.
DOI: 10.17632/ft7ctmb7yh
title: sample

description: Describe your research hypothesis, what your data shows, any notable findings and how the data can be interpreted. Please add sufficient description to enable others to understand what the data is, how it was gathered and how to interpret and use it.
DOI: 10.17632/mww99239pv
title: Distribution and Nest Occupancy Patterns of Oecophylla Smaragdina (Hymenoptera: Formicidae) Colonies in Southeast Asian Oil Palm Plantations

description: Data related to the study of the Asian weaver ant colony distribution in large oil palm plantations canopies nationwide in Malaysia-Indonesia. 
Colony growth development stage status.
Some definitions for (i) incipient, (ii) immature, (iii) pre-matured, (iv) matured Oecophylla smaragdina colonies:
An incipient is an embryonic colony identified as occupying only 1 palm within 1 to 3 months. The term immature is an innovative description to distinguish among the four determined growth of development stage of the Asian weaver ant. Pre-matured refers to the colonies newly reproductive emergence since the first release corresponding to a not yet acquired population dynamic stability. The matured colony is above 3 years of age with a notified stable population dynamic suitable for manipulation i.e. nest capture and translocation to unoccupied plantation blocks (by the Asian weaver ant colonies) in the case of a sudden defoliator’s infestation outbreak. 
The objectives included (1) documenting the distribution of O. smaragdina colonies and estimating the boundaries of colonized palms, (2) investigating colony occupancy patterns in relation to the presence of the nest network in the canopy, (3) visually distinguishing between barrack and brood nests by comparing their stand heights from the ground, and (4) estimating the age of colonies in relation to the average total number of nests and total number of occupied trees per colony. 
1. Asian weaver ant nest distribution pattern in oil palm trees from selected plantations (Malaysian Palm Oil Board MPOB Teluk Intan, Perak - Universiti Malaya, Felcra, Boustead plantations Kota Tinggi Sg. Arah Johor - )
2. Investigation of Oecophylla smaragdina growth stage development as : incipient immature pre matured and matured colonies based on the number of occupied palm trees over time from first month to about 4-5 years of colony age. 


3. Determination of colonies age by Pearson correlation coefficient and Poisson Probability analysis. 

4. Study of the visual distinction between the brood and barrack nests of the Asian weaver ant colonies in the occupied oil palm plantation in South-East Asia (Malaysia-Indonesia). The discriminant analysis DA determined the height from the ground represented the nest location in the palm canopies as being the main factor helping to visually identify the brood from the barrack nests. The brood nest are located at higher position from ground with a range of 6-15 meters and the barracks nests are located at a range of 4 to 5 m in this study. This is done first time. This is in conjunction for future biological control trial on the invasive bagworm species Metisa plana (defoliator) causing serious yield fresh fruit bunches loss with low quality for over two years period.
DOI: 10.17632/ptz377bwb8
title: Potato Leaf Disease Dataset in Uncontrolled Environment

description: Existing potato leaf datasets might not accurately reflect the real-world conditions of potato leaf diseases because of the controlled environment in which the images were captured and the lack of information on disease type, which only captures diseases caused by fungi. Therefore, we obtained new primary data that offers several advantages over previous datasets and will better represent the various types of diseases commonly found on the leaves of potato plants. Our proposed dataset was captured in an uncontrolled setting, resulting in a wide range of variables, including the background and diverse directions and distances of the images. The dataset includes several classes of potato leaf diseases caused by fungi, viruses, pests, bacteria, Phytophthora, nematodes, and healthy leaves. The introduction of this new dataset will facilitate a more accurate representation of potato leaf diseases and will allow for the advancement of current research on potato leaf disease identification.

Image size : 1500 x 1500 pixel
Data format : .jpg
Number of images : 3076 images
Category : bacteria, fungi, healthy, nematode, pest, phytophthora, and virus
Data source location : Central Java, Indonesia
How data were acquired : Captured from potato farms located in Central Java, Indonesia, using several smartphone cameras.
DOI: 10.6084/m9.figshare.12420743.v1
title: Fig.4.xlsx

description: Fig.4.xlsx
DOI: 10.6084/m9.figshare.24512059.v1
title: Supplementary Material for: Two pediatric patients with acute acquired comitant esotropia as the first symptom of brainstem tumor: A Case Report

description: Introduction Acute acquired comitant esotropia (AACE) is an acquired strabismus with uncrossed sudden-onset diplopia due to esodeviation, comitant esotropia without accommodation factor, or paretic eye movement. The diagnosis of AACE entails differentiation from incomitant esotropia caused by abnormalities in the central nervous system. We present two pediatric patients with AACE as the first symptom of brainstem tumor. Case presentation The two patients were aware of their diplopia and had no other neurological abnormalities. There were no special findings in the anterior segment, ocular media, or fundus. Esotropia with a difference of no more than 10Δ between distant and near fixations was observed. Eye movements were normal, and Hess red-green test under prism neutralization did not reveal abduction restriction. The presumed cause of AACE in both patients was excessive use of digital displays, and brain magnetic resonance imaging (MRI) was performed to confirm the absence of neurological abnormality. Using MRI, a definitive diagnosis of AACE was made based on comitant esotropia associated with diffuse median glioma and medullary pilocytic astrocytoma without abducens nerve palsy. Conclusion Although the incidence of AACE caused by brainstem tumors may be low, it is necessary to perform head imaging to confirm etiology. Furthermore, Hess red-green test under prism neutralization is considered important for the differentiation of abducens nerve palsy.
DOI: 10.6084/m9.figshare.27350322.v1
title: Summary statistics

description: Files are summary statistics and gene-set used to create the article's figures.
DOI: 10.6084/m9.figshare.12122991.v1
title: Supplementary Material for: Integrative Analysis of Long Noncoding RNAs in Patients with Graft-versus-Host Disease

description: <b><i>Background:</i></b> Chronic graft-versus-host disease (cGVHD) remains a major cause of late non-recurrence mortality despite remarkable improvements in the field of allogeneic hematopoietic stem cell transplantation. Although recent studies have found that B-cell receptor (BCR)-activated B cells contribute to pathogenesis in cGVHD, the specific molecular mechanisms of B cells in this process remain unclear. <b><i>Methods:</i></b> In our study, human long noncoding RNA (lncRNA) microarrays and bioinformatic analysis were performed to identify different expressions of lncRNAs in peripheral blood B cells from cGVHD patients compared with healthy ones. The differential expression of lncRNA was confirmed in additional samples by quantitative real-time polymerase chain reaction (qRT-PCR). <b><i>Results:</i></b> The microarray analysis revealed that 106 of 198 differentially expressed lncRNAs were upregulated and 92 were downregulated in cGVHD patients compared with healthy controls. Intergenic lncRNAs accounted for the majority of differentially expressed lncRNAs. A KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway analysis showed that the differentially expressed mRNAs, which were coexpressed with lncRNA, between the cGVHD group and the healthy group were significantly enriched in the BCR signaling pathway. Further analysis of the BCR signaling pathway and its coexpression network identified three lncRNAs with the strongest correlation with BCR signaling and cGVHD, as well as a series of protein-coding genes and transcription factors associated with them. The three candidate lncRNAs were further validated in another group of cGVHD patients by qRT-PCR. <b><i>Conclusions:</i></b> This is the first study on the correlation between lncRNA and cGVHD using lncRNA microarray analysis. Our study provides novel enlightenment in exploring the molecular pathogenesis of cGVHD.
DOI: 10.6084/m9.figshare.21545523.v1
title: Supplemental materials for effect of conventional treatment on dental complications and ectopic ossifications among 30 adults with XLH

description: This is the supplemental materials for effect of conventional treatment on dental complications and ectopic ossifications among 30 adults with XLH
DOI: 10.17632/bj27474v6f
title: VELAS: An open-source toolbox for visualization and analysis of elastic anisotropy

description: Although elastic properties and their anisotropy play a crucial role in materials science and technology, it is not straightforward to visualize how properties such as shear modulus vary with the direction of stress/strain. Here, written in GNU Octave, we have developed an easy-to-use, flexible, and user-friendly open-source toolbox with a graphical user interface, VELAS, which automatically visualizes and analyses the elastic anisotropy of arbitrary crystal systems using second-order elastic constants. Using Voigt-Reuss-Hill averaging scheme, VELAS allows the calculation of more than ten significant mechanical properties such as modulus, hardness, anisotropy index, ductility, and bond type. It also supports the determination of the mechanical stability of crystals at atmospheric and high pressures using the Born mechanical stability criterion. VELAS provides a new easy-to-use tool for detecting and identifying unusual mechanical properties such as negative Poisson's ratio, negative linear compressibility, and negative bulk modulus. VELAS offers several alternative visualization solutions for elastic properties, such as unit spherical projection, and map projection, and supports direct output of high-quality images. Furthermore, VELAS provides users an interface to read data from the Materials Project API in both online and offline modes. After introducing the basic theory, we detail the software framework, technical route, and installation specifications of VELAS. Moreover, the reliability and versatility of VELAS are confirmed by the analysis of the cases of negative linear compressibility, negative Poisson's ratio, hardness, and fracture toughness.
DOI: 10.6084/m9.figshare.14709153.v1
title: Supplementary Material for: Cabozantinib in Advanced Hepatocellular Carcinoma: Efficacy and Safety Data from an International Multicenter Real-Life Cohort

description: <b><i>Background and Aims:</i></b> The multikinase inhibitor cabozantinib has been approved for hepatocellular carcinoma (HCC) previously treated with sorafenib. We report safety and efficacy data of an international, multicenter, real-life cohort of patients with advanced HCC treated with cabozantinib. <b><i>Methods:</i></b> Patients with HCC who were treated with cabozantinib were retrospectively identified across 11 centers in Austria, Switzerland, and Germany. Patients’ characteristics, adverse events, duration of treatment and overall survival (OS) data were analyzed until April 1, 2020. <b><i>Results:</i></b> Eighty-eight patients from 11 centers were included. The predominant underlying liver diseases were NAFLD/NASH in 26 (30%) and hepatitis C infection in 21 (24%) patients. Seventy-eight patients (89%) were classified as Barcelona clinic liver cancer (BCLC) stage C. Sixty patients (68%) were Child-Pugh A, whereas 22 (25%) were Child-Pugh B, respectively. Cabozantinib was used as systemic second- and third-line or later treatment in 41 (47%) and 46 (52%) patients, respectively. The following best responses under cabozantinib were documented: partial response in 6 (7%), stable disease in 28 (32%), and progressive disease in 28 (32%) patients, respectively. Fifty-two patients (59%) died during follow-up. The median OS from start of cabozantinib treatment was 7.0 months in the entire cohort and 9.7 months in Child-Pugh A patients, while Child-Pugh B patients had a median OS of 3.4 months, respectively. Thirty-seven (42%) patients fulfilled the CELESTIAL inclusion and exclusion criteria, showing a median OS of 11.1 months. Most common adverse events were fatigue (15.6%) and diarrhea (15.6%). <b><i>Conclusion:</i></b> Cabozantinib treatment was effective, safe, and feasible in patients with advanced HCC in patients with compensated cirrhosis. Patients in the real-life setting had more advanced liver disease – in which 25% of patients were Child-Pugh B. However, OS in patients with Child-Pugh A cirrhosis was similar to that reported in the phase 3 trial (CELESTIAL).
DOI: 10.6084/m9.figshare.25466362.v1
title: Data From: Light and Dark Fur Cats - Total Body Scores

description: Limited data exists within the forensic veterinary medicine discipline about the differences between the decomposition of animals with fur. Due to the sheer number of animals used as animal models and the number of animals that exist, determining the stages of decomposition that is applicable for all species is difficult. Typically, assessing what stage of decomposition a decedent is in is subjective due to the visual assessment of decompositional changes. A method developed to rectify this issue was the total body score (TBS) method, which assigns a numerical value based of the degree of decomposition to the head, torso, and limbs. The purpose of this study was to examine the decomposition of cats, identify any unique decomposition characteristics, and determine the rate of decomposition using total body score and accumulated degree days (ADD). Twelve domestic short haired cats were placed in a grassy field in West Lafayette, IN. An assessment of TBS was documented for each cat and each experimental group. An exponential relationship between TBS and ADD was documented. Overall, there was not a significant difference in the rate of decomposition or total body scores between the groups (Z = -91.00, p = 0.0672).
DOI: 10.17028/rd.lboro.20069207.v1
title: Dataset for Modal testing with a pedestrian as a vibration exciter

description: A novel approach, for identification of modal properties using a dynamic excitation induced by a human walker, has previously been proposed to identify natural frequencies, damping ratios and modal masses. The developed approach is now expanded to also estimate vibration mode shapes, thus fully characterising the dynamic behaviour of a structure in a simple and affordable way. Additionally, the reliability of the method is parametrically analysed and validated against simulated and real world data of a footbridge. Results indicate that, given a reasonable initial estimate of the target modal properties values and with careful consideration of the number and location of measured responses, it is possible to estimate all modal properties of a structure in a reliable and simpler way than conventional modal testing methods: handheld impact hammer, electrodynamic shaker or ambient vibration tests. <br> This dataset contains the source code used to reproduce the results presented in the source article: files to run are parson.m and sim_parson.m, as well as walking forces, mode shapes and vibratory responses of the Parson footbridge. A simple runme.m file, illustrating identification using a single run at 1.4Hz is also added. For further questions please contact the corresponding author
DOI: 10.17632/f289cxcwv3
title: Data for: The Shear-wave Velocity Prediction for Sedimentary Rocks

description: Well log data for Well 15/9-F-1 A.
DOI: 10.17632/fbx7vnsn4s
title: Data: Extreme marine heatwave linked to mass fish kill in the Red Sea

description: This data includes the survey data from visual beach transects across multiple beaches impacted and unimpacted by a mass fish mortality event. This event occurred in the Ar Rayis region south of Yanbu in Saudi Arabia in late August 2023. Local officials reported large numbers of dead fishes and cuttlefishes washing ashore, which prompted a response to survey these areas. This data includes counts of cuttle bones and counts of dead fishes that had washed ashore at 8 sites within the ~60km of impacted area and 5 unimpacted sites outside of the impacted area.
DOI: 10.17632/hxtnfmwkyr
title: Supplementary Material for "Hybrid Safe Reinforcement Learning: Tackling Distribution Shift and Outliers with the Student-t's Process".

description: Supplementary material for the pre-print paper "Hybrid Safe Reinforcement Learning: Tackling Distribution Shift and Outliers with the Student-t's Process." submitted to the Journal of Neurcomputing (November 2024).
DOI: 10.6084/m9.figshare.22723171.v1
title: Data for "Geospatial Mapping of Distribution Grid with Machine Learning and Publicly-Accessible Multi-Modal Data"

description: The data, ground truth labels, and model checkpoints are needed for the code repository: https://github.com/wangzhecheng/GridMapping. <br> Unzip these zip files such that the directory structure looks like: <pre><code>GridMapping/checkpoint/...<br> GridMapping/data/...<br> GridMapping/results/...<br> GridMapping/ground_truth/...</code></pre>
DOI: 10.6084/m9.figshare.27241821.v1
title: <b>Healthy elderly citizens’ preferences for home care services: a discrete choice experiment in Xi’an, China</b>

description: The data including socio-demographics and questionnaires.
DOI: 10.6084/m9.figshare.5492392.v1
title: Deep Phenotyping Dataset

description: Image files and metadata associated with Namin et al 2017, Plant Methods paper from the TraitCapture project. Full project details and data at TraitCapture.org<br>Paper Reference:Deep Phenotyping: Deep Learning For Temporal Phenotype/Genotype Classification. Sarah Taghavi Namin, Mohammad Esmaeilzadeh, Mohammad Najafi, Tim B. Brown, Justin O. Borevitz. Plant Methods. 2018. 14:66 DOI: https://doi.org/10.1186/s13007-018-0333-4<br>
DOI: 10.6084/m9.figshare.7998053.v1
title: GSE24265_series_matrix.txt.gz

description: 来自4名死者患者的脑样本包括在微阵列研究中，该患者在前4天内具有幕上脑内出血。该研究组包括2名女性和2名男性，中位年龄为79岁（68-92岁）。在尸检和肉眼检查期间，经验丰富的神经病理学家使用最新的神经放射学图像鉴定怀疑出现水肿的血肿周围区域。来自血肿周围区域（PH），对侧灰质（CG）和对侧白质（CW）的样本在死亡后的前5小时内获得，并在液氮中快速冷冻并储存在-80℃直至RNA分离。
DOI: 10.17632/p4sbhpdh72
title: LINF_190007600

description: Sarcalumenin-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.26188/5b8c935bb6b00
title: Deepbinner: WGS set reference genomes

description: These are the reference genomes (FASTA format) reads for the WGS test set used in the Deepbinner manuscript.
DOI: 10.6084/m9.figshare.27247758.v2
title: Dataset of Entrepreneurial Marketing Strategy Development for Market Penetration in The Soap and Detergent Startup

description: Research data set on entrepreneurial marketing strategy development for market penetration in the soap and detergent startup. This data set contains interview protocols; verbatim interview; and triangulation validation. The study used a single-case study of the soap and detergent startup Ray Soap in Malang, Indonesia, in 2024. This qualitative research dataset with data collection using the in-depth interview method is in Bahasa Indonesia.
DOI: 10.6084/m9.figshare.28683071.v2
title: <b>Spatiotemporal transcriptomics reveals key gene regulation for grain yield and quality in wheat</b>

description: Cereal grain size and quality are important agronomic traits in crop production. The development of wheat grains is underpinned by complex regulatory networks. The precise spatial and temporal coordination of diverse cell types is essential for the formation of functional compartments. To provide comprehensive spatiotemporal information about biological processes in developing wheat grain, we performed a spatial transcriptomics study during the early grain development stage from 4 to 12 days after pollination. We identified tissue-specific marker genes and found that some genes and transcription factors showed specific spatial expression patterns over time. Through co-expression and motif analyses, we identified a specific group of genes potentially regulating wheat grain development, including the gene encoding transcription factor TaABI3-3B, which is specifically expressed in the embryo and embryo surrounding endosperm and negatively regulates embryo and grain size. Our work provides pivotal insights into yield improvement and for future wheat breeding