cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21233/wxbb-ej68
title: Großes Schwanental pollen dataset

description: Raw data for the Großes Schwanental pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15019427
title: Raw data of flow cytometric analyses from Himadri B. Thapa et al., Enrichment of human IgA-coated bacterial vesicles in ulcerative colitis as a driver of inflammation, Nat Commun. 2025. Fig. 3A+B, Sup. Fig. 4A+6A.

description: Figure 3A: Flow cytometric analysis of human intestinal organoids testing for CD89 expression. (Antibody conjugates: CD89-PE) Colonic organoids were developed from organoid cultures derived from human biopsies. Human monocytes of 3 individual donors were used as positive control for CD89 expression in comparison. (Antibody conjugates: CD14-AF700, CD11b-PE-Cy7 and CD89-PE) Analysis was performed using a Beckman CytoFLEX Flow Cytometer. 

Figure 3B: Human monocytes isolated from peripheral blood via magnetic sorting using the Miltenyi CD14 MicroBeads (#130-050-201) are positive for CD14, CD11b and CD89 expression, n=4. (Antibody conjugates: CD14-AF700, CD11b-PE-Cy7 and CD89-PE) Data was recorded with a BD Bioscience LRS Fortessa. 

Sup.Fig. 4A: Flow cytometric analysis of U937 cells treated with EtOH solvent control, vitamin D3 (VD3) alone, TGF-β1 (TGF-β1) alone or with VD3 + TGF-β1 in combination for 48h for CD14, CD11b and CD89 expression. Only U937 cells treated with VD3 + TGF-β1 are CD14+CD11b+CD89+, n=3. (Antibody conjugates: CD14-AF700, CD11b-PE-Cy7 and CD89-PE) Data was recorded with a BD Bioscience LRS Fortessa. 

Sup.Fig. 6A: Flow cytometric analysis of Bone Marrow-Derived Dendritic Cells (BMDCs) prepared from CD89wt/wt (Littermate) and CD89tg/wt (CD89-transgenic) mice for CD89 expression. Viability was determined using a 7-AAD dye (negative cells are considered alive), n=15. (Antibody conjugate: CD89-PE) Data was recorded with a BD Bioscience LRS Fortessa. 

Gating strategies for all the data can be found in the original publication. Data analysis was performed with FlowJo 10.

 

The publication related to this data can be found here:

Thapa, H.B., Passegger, C.A., Fleischhacker, D. et al. Enrichment of human IgA-coated bacterial vesicles in ulcerative colitis as a driver of inflammation. Nat Commun 16, 3995 (2025). https://doi.org/10.1038/s41467-025-59354-5
DOI: 10.5281/zenodo.15019428
title: Raw data of flow cytometric analyses from Himadri B. Thapa et al., Enrichment of human IgA-coated bacterial vesicles in ulcerative colitis as a driver of inflammation, Nat Commun. 2025. Fig. 3A+B, Sup. Fig. 4A+6A.

description: Figure 3A: Flow cytometric analysis of human intestinal organoids testing for CD89 expression. (Antibody conjugates: CD89-PE) Colonic organoids were developed from organoid cultures derived from human biopsies. Human monocytes of 3 individual donors were used as positive control for CD89 expression in comparison. (Antibody conjugates: CD14-AF700, CD11b-PE-Cy7 and CD89-PE) Analysis was performed using a Beckman CytoFLEX Flow Cytometer. 

Figure 3B: Human monocytes isolated from peripheral blood via magnetic sorting using the Miltenyi CD14 MicroBeads (#130-050-201) are positive for CD14, CD11b and CD89 expression, n=4. (Antibody conjugates: CD14-AF700, CD11b-PE-Cy7 and CD89-PE) Data was recorded with a BD Bioscience LRS Fortessa. 

Sup.Fig. 4A: Flow cytometric analysis of U937 cells treated with EtOH solvent control, vitamin D3 (VD3) alone, TGF-β1 (TGF-β1) alone or with VD3 + TGF-β1 in combination for 48h for CD14, CD11b and CD89 expression. Only U937 cells treated with VD3 + TGF-β1 are CD14+CD11b+CD89+, n=3. (Antibody conjugates: CD14-AF700, CD11b-PE-Cy7 and CD89-PE) Data was recorded with a BD Bioscience LRS Fortessa. 

Sup.Fig. 6A: Flow cytometric analysis of Bone Marrow-Derived Dendritic Cells (BMDCs) prepared from CD89wt/wt (Littermate) and CD89tg/wt (CD89-transgenic) mice for CD89 expression. Viability was determined using a 7-AAD dye (negative cells are considered alive), n=15. (Antibody conjugate: CD89-PE) Data was recorded with a BD Bioscience LRS Fortessa. 

Gating strategies for all the data can be found in the original publication. Data analysis was performed with FlowJo 10.

 

The publication related to this data can be found here:

Thapa, H.B., Passegger, C.A., Fleischhacker, D. et al. Enrichment of human IgA-coated bacterial vesicles in ulcerative colitis as a driver of inflammation. Nat Commun 16, 3995 (2025). https://doi.org/10.1038/s41467-025-59354-5
DOI: 10.21233/jj9d-3787
title: Old Crow Basin insect modern dataset

description: Raw data for the Old Crow Basin insect modern dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/s41m-n115
title: Lake Ontario/Athol Bay water chemistry dataset

description: Raw data for the Lake Ontario/Athol Bay water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/0vja-ev61
title: Groter Warder pollen dataset

description: Raw data for the Groter Warder pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/0tg4-rg16
title: Bay of Quinte/Massasauga Point ostracode surface sample dataset

description: Raw data for the Bay of Quinte/Massasauga Point ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/wqb9-b842
title: LDDsite1093 ostracode surface sample dataset

description: Raw data for the LDDsite1093 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.3pg9gb
title: Occurrence Download

description: A dataset containing 689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gossypium herbaceum L.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 689 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021094-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pn3ymn
title: Occurrence Download

description: A dataset containing 1748 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Phylloscopus xanthodryas (Swinhoe, 1863)"
 ]
}

 The dataset includes 1748 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021095-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/e602-5531
title: Linville vertebrate fauna dataset

description: Raw data for the Linville vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.rn7zvr
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((109.90052 -1.13802,110.03968 -1.13802,110.03968 -1.03858,109.90052 -1.03858,109.90052 -1.13802))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 118 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021096-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/s4v7-e320
title: Okinawa ostracode surface sample dataset

description: Raw data for the Okinawa ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.ka645g
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Triadica sebifera (L.) Small"
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021098-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bbv79s
title: Occurrence Download

description: A dataset containing 307 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eocanthecona furcellata (Wolff, 1811)"
 ]
}

 The dataset includes 307 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021097-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/vbhw-tz63
title: Fleet Moss testate amoebae surface sample dataset

description: Raw data for the Fleet Moss testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ek42-wn85
title: Mangui testate amoebae surface sample dataset

description: Raw data for the Mangui testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/1sds-s017
title: Blanche River ostracode surface sample dataset

description: Raw data for the Blanche River ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.kqadz3
title: Occurrence Download

description: A dataset containing 287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex sadoensis Franch.",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 287 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021099-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/z063-mw58
title: Ningbo  ostracode surface sample dataset

description: Raw data for the Ningbo  ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/by0k-w163
title: Fish (Jackson diatom dataset

description: Raw data for the Fish (Jackson diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/0s7d-nd36
title: Onion Portage pollen dataset

description: Raw data for the Onion Portage pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/d2yd-9f06
title: Rivers [VT-AD-2] vertebrate fauna dataset

description: Raw data for the Rivers [VT-AD-2] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/9z48-wc58
title: Woldweg pollen dataset

description: Raw data for the Woldweg pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ysdp-xb66
title: Hulls Canyon pollen dataset

description: Raw data for the Hulls Canyon pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/d7kw-r250
title: Square Lake diatom surface sample dataset

description: Raw data for the Square Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.28953890.v1
title: Chromosome-level genome assembly of<i> </i><i>Helcystogramma macroscopa</i> (Lepidoptera: Gelechiidae)

description: We assembled and annotated a chromosome-level genome for <i>Helcystogramma macroscopa</i> based on PacBio and HiFi reads, Hi-C reads, and BGI sequencing reads
DOI: 10.21233/2acm-4f13
title: NWTSU 55 pollen surface sample dataset

description: Raw data for the NWTSU 55 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/a089-vb96
title: Roseland Lake diatom surface sample dataset

description: Raw data for the Roseland Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/mhsc-ar32
title: ABD120 pollen surface sample dataset

description: Raw data for the ABD120 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/6epp-y155
title: Mindelsee ostracode surface sample dataset

description: Raw data for the Mindelsee ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.m7nczm
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platanthera ophrydioides F.Schmidt",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 147 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021101-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/9t6j-0681
title: Little Quill Lake ostracode surface sample dataset

description: Raw data for the Little Quill Lake ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/jq1p-qy95
title: Elatia KB peatland testate amoebae surface sample dataset

description: Raw data for the Elatia KB peatland testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/pejt-z358
title: DIANA04 pollen surface sample dataset

description: Raw data for the DIANA04 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/95gq-8q49
title: Toivola Bog A testate amoebae surface sample dataset

description: Raw data for the Toivola Bog A testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/y42f-6218
title: Lake Maliq pollen dataset

description: Raw data for the Lake Maliq pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/9886-kw82
title: Hole Bog testate amoebae surface sample dataset

description: Raw data for the Hole Bog testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/cr7k-zd37
title: Wallace Reservoir [Ogletree/Dyar] [9GE175] vertebrate fauna dataset

description: Raw data for the Wallace Reservoir [Ogletree/Dyar] [9GE175] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.t37bv3
title: Occurrence Download

description: A dataset containing 177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Salvinia ×molesta D.S.Mitch."
 ]
}

 The dataset includes 177 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021102-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/tw69-9953
title: Goddard Pond, RI pollen surface sample dataset

description: Raw data for the Goddard Pond, RI pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/x1kf-ca93
title: Chequamegon Flowage diatom dataset

description: Raw data for the Chequamegon Flowage diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.aafrug
title: Occurrence Download

description: A dataset containing 274 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Endemic flora of Nepal at KATH"
 ]
}

 The dataset includes 274 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021104-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/jgma-s082
title: East Lake water chemistry dataset

description: Raw data for the East Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.