cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11877411.v1
title: Datasets and metadata supporting the published article: BCL9/STAT3 regulation of transcriptional enhancer networks promote DCIS progression

description: <b>Summary:</b>The datasets described here were gathered while investigating the molecular processes by which some human ductal carcinoma in situ (DCIS) lesions advance to the more aggressive form while others remain indolent.<br><b>Data access:</b>All RNA sequencing data have been deposited in the <i>Gene Expression Omnibus</i> with accession https://identifiers.org/geo:GSE143790 All Chip-Exo data have been deposited in the <i>Gene Expression Omnibus</i> with accession https://identifiers.org/geo:GSE143313 RPPA data is included together with this data record, in the file <b>Supplementary Figure 3-RPPA.xlsx</b>. The Raw RPPA and ANOVA tabs are the results, while the other tabs are IPA analysis performed by the authors. Permission to use figures and data generated using QIAGEN Ingenuity Pathway Analysis (IPA) is given in the file <b>QIAGEN Ingenuity Product Support Permission letter for Dr. Behbod.pdf</b>.The specific data underlying each figure and supplementary figure in the manuscript are provided as part of this data record, and are as follows:<b>Figure 1-BCL9-STAT3 interaction.xlsx</b><b>Figure 2-ChIP Exo.xlsx</b><b>Figure 3-ChIP.xlsx</b><b>Figure 4-MMP16 and avb3 MIND xenografts.xlsx</b><b>Figure 5-MMP16 avb3 TMA analysis.xlsx</b><b>Figure 6-Carnosic data.xlsx</b><b>Supplementary Figure 3-RPPA.xlsx</b><b>Supplementary Figure 4-STAT3 Reporter.xlsx</b><b>Supplementary Figure 5-ChIP Exo Motifs.xlsx</b><b>Supplementary Figure 6-integrin data.xlsx</b><b>Supplementary Figure 7-MMP data.xlsx</b><br><b>Study approval and patient consent: </b>Patients gave written informed consent for participation in the University of Kansas Medical Center Institutional Review Board–approved study allowing collection of additional biopsies and or surgical tissue for research. Animal experiments were conducted following protocols approved by the University of Kansas School of Medicine Animal Care and Use and Human Subjects Committee. <b><br></b><b>Study aims and methodology: </b>The aim of the related study was to determine the molecular processes underlying progression to invasion in DCIS using PDX DCIS MIND animal models. Using a novel intraductal model they identify downregulation of specific STAT3 targets to promote progression and use a purified component from rosemary extract to show that treatment <i>in vivo</i> decreases DCIS progression in patient derived DCIS and cell line models.<br>
DOI: 10.17633/rd.brunel.11876982
title: Childhood maltreatment in Indian adolescents with a history of child work dataset.

description: This data set consists of 155 variables (excluding the participant ID) that underpin the analysis of the paper entitled ‘Childhood maltreatment and its mental health consequences among Indian adolescents with a history of child work’ to be published in the <i>Australian & New Zealand Journal of Psychiatry</i>.<br> The methodology for the data collection is provided in the paper.
DOI: 10.17633/rd.brunel.11876982.v1
title: Childhood maltreatment in Indian adolescents with a history of child work dataset.

description: This data set consists of 155 variables (excluding the participant ID) that underpin the analysis of the paper entitled ‘Childhood maltreatment and its mental health consequences among Indian adolescents with a history of child work’ to be published in the <i>Australian & New Zealand Journal of Psychiatry</i>.<br> The methodology for the data collection is provided in the paper.
DOI: 10.6084/m9.figshare.11876703
title: co2

description: co2 norge
DOI: 10.6084/m9.figshare.11876706
title: Supplementary Material for: A Systematic Review of Core Outcomes for Hypospadias Surgery

description: Although the outcome of hypospadias surgery requires careful scrutiny, there is little consensus on what clinical outcome parameters should be considered essential as part of routine clinical practice. To understand the extent of variation in reported outcome measures, Pubmed was searched to identify outcomes in boys with hypospadias published in the English language from 2008 to 2017. Eligibility criteria were met in 268 publications. Outcomes were inconsistently reported and only 9 (13%) were reported in more than 25% of papers. Outcome studies describing younger boys were overrepresented. Urethrocutaneous fistula was reported in about 90% of publications that included boys aged &lt;16 years. Among younger boys meatal stenosis, dehiscence, and urethral strictures were next most frequent. In the older age groups, an increasing frequency of cosmesis, meatal shape/location, and genital skin changes was described. Outcomes reflecting sexual health, erection, and relationship status including paternity were reported in those aged &gt;16 years. The current study identifies the range of parameters that are measured to assess outcome after hypospadias surgery. The results can be used to promote the development of an age-specific core outcome set that can be applied as a standardized assessment tool in future routine clinical settings.
DOI: 10.6084/m9.figshare.11876706.v1
title: Supplementary Material for: A Systematic Review of Core Outcomes for Hypospadias Surgery

description: Although the outcome of hypospadias surgery requires careful scrutiny, there is little consensus on what clinical outcome parameters should be considered essential as part of routine clinical practice. To understand the extent of variation in reported outcome measures, Pubmed was searched to identify outcomes in boys with hypospadias published in the English language from 2008 to 2017. Eligibility criteria were met in 268 publications. Outcomes were inconsistently reported and only 9 (13%) were reported in more than 25% of papers. Outcome studies describing younger boys were overrepresented. Urethrocutaneous fistula was reported in about 90% of publications that included boys aged &lt;16 years. Among younger boys meatal stenosis, dehiscence, and urethral strictures were next most frequent. In the older age groups, an increasing frequency of cosmesis, meatal shape/location, and genital skin changes was described. Outcomes reflecting sexual health, erection, and relationship status including paternity were reported in those aged &gt;16 years. The current study identifies the range of parameters that are measured to assess outcome after hypospadias surgery. The results can be used to promote the development of an age-specific core outcome set that can be applied as a standardized assessment tool in future routine clinical settings.
DOI: 10.6084/m9.figshare.11876664
title: MATLAB scripts and Edinburgh dataset

description: MATLAB processing scripts and full Edinburgh trajectory dataset.
DOI: 10.6084/m9.figshare.11876664.v1
title: MATLAB scripts and Edinburgh dataset

description: MATLAB processing scripts and full Edinburgh trajectory dataset.
DOI: 10.6084/m9.figshare.11876598
title: Results

description: Transcribed participant responses from Trials 1 and 2.
DOI: 10.6084/m9.figshare.11876598.v1
title: Results

description: Transcribed participant responses from Trials 1 and 2.
DOI: 10.6084/m9.figshare.11876580
title: Trajectory files

description: Trajectory files used for Trials 1 and 2.
DOI: 10.6084/m9.figshare.11876553
title: Supplementary Tables

description: Supplementary Table 2. Common SNPs in each pathotype.Supplementary Table 3. Annotated common SNPs in each pathotype.<br>Supplementary Table 4. Specific SNPs in each pathotype.Supplementary Table 5. Annotated specific SNPs in each pathotype.single nucleotide polymorphisms, SNPs.<br>
DOI: 10.6084/m9.figshare.11876553.v1
title: Supplementary Tables

description: Supplementary Table 2. Common SNPs in each pathotype.Supplementary Table 3. Annotated common SNPs in each pathotype.<br>Supplementary Table 4. Specific SNPs in each pathotype.Supplementary Table 5. Annotated specific SNPs in each pathotype.single nucleotide polymorphisms, SNPs.<br>
DOI: 10.17028/rd.lboro.11876535
title: Systemic model of BIM adoption

description: This is cross-classified survey data of users, firms, and projects aimed to develop a systemic model of BIM adoption. The model combines variables in different analytical level such as users nested in firms and projects simultaneously. The dataset includes the name for each variable, the wording of the variables as in the questionnaire, and the measurement scale. The code for analysis using cross-classified multilevel modelling in MPlus is also provided.
DOI: 10.6084/m9.figshare.11876517
title: Conspiracy and thinking style

description: New dataset examining conspiracy and thinking style
DOI: 10.6084/m9.figshare.11876517.v1
title: Conspiracy and thinking style

description: New dataset examining conspiracy and thinking style
DOI: 10.6084/m9.figshare.11876517.v3
title: Conspiracy and thinking style

description: New dataset examining conspiracy and thinking style
DOI: 10.6084/m9.figshare.11876496
title: Conspiracy data file

description: Dataset for conspiracy and thinking style study
DOI: 10.6084/m9.figshare.11876517.v2
title: Conspiracy and thinking style

description: New dataset examining conspiracy and thinking style
DOI: 10.6084/m9.figshare.11876493
title: Supplementary Material for: Global, Regional and Country-Specific Burden of Ischaemic Stroke, Intracerebral Haemorrhage and Subarachnoid Haemorrhage: A Systematic Analysis of the Global Burden of Disease Study 2017

description: <b><i>Background:</i></b> Stroke is a leading cause of death and disability in globally and particularly in low- and middle-income countries, and this burden is increasing. The burden of stroke pathological subtypes varies in terms of incidence, disability and mortality. Previous Global Burden of Diseases, Injuries, and Risk Factors Studies (GBD) reports did not provide separate global burden and trends estimates for haemorrhagic stroke by primary intracerebral haemorrhage (PICH) and subarachnoid haemorrhage (SAH). <b><i>Aim:</i></b> To summarise the GBD 2017 findings for the burden and 27-year trends for ischaemic stroke (IS), intracerebral haemorrhage and SAH by age, sex and country income level in 21 world regions and associated risk factors. <b><i>Methods:</i></b> Data on stroke incidence, prevalence, mortality and disability-adjusted life-years (DALY) lost and the burden of IS, PICH and SAH were derived from all available datasets from the GBD 2017 studies. Data were analysed in terms of absolute numbers and age-standardised rates per 100,000 (95% uncertainty interval [UI]), with estimates stratified by age, sex and economic development level by the World Bank classification. We also analysed changes in the patterns of incidence, mortality and DALYs estimates between 1990 and 2017. <b><i>Results:</i></b> In 2017, there were 11.9 million incident (95% UI 11.1–12.8), 104.2 million prevalent (98.6–110.2), 6.2 million fatal (6.0–6.3) cases of stroke and 132.1 million stroke-related DALYs (126.5–137.4). Although stroke incidence, prevalence, mortality and DALY rates declined from 1990 to 2017, the absolute number of people who developed new stroke, died, survived or remained disabled from stroke has almost doubled. The bulk of stroke burden (80% all incident strokes, 77% all stroke survivors, 87% of all deaths from stroke and 89 of all stroke-related DALYs) in 2017 was in low- to middle-income countries. Globally in 2017, IS constituted 65%, PICH –26% and SAH –9% of all incident strokes. <b><i>Discussion:</i></b> The latest GBD estimates of stroke burden in 195 countries supersede previous GBD stroke burden findings and provide most accurate data for stroke care planning and resource allocation globally, regionally and for 195 countries. Stroke remains the second leading cause of deaths and disability worldwide. The increased stroke burden continues to exacerbate a huge pressure on people affected by stroke, their families and societies. It is imperative to develop and implement more effective primary prevention strategies to reduce stroke burden and its impact.
DOI: 10.6084/m9.figshare.11876496.v2
title: Conspiracy data file

description: Dataset for conspiracy and thinking style study
DOI: 10.6084/m9.figshare.11876490
title: LPPT_IJGIS.zip

description: The data used in the paper submitted to IJGIS<br>
DOI: 10.6084/m9.figshare.11876496.v1
title: Conspiracy data file

description: Dataset for conspiracy and thinking style study
DOI: 10.6084/m9.figshare.11876481
title: Role of predators in the recruitment of invertebrates in a rocky subtidal community in the southwest Bay of Fundy, NB

description: Predation is potentially an inﬂuential source of early post-settlement mortality of benthic marine invertebrates, but previous studies demonstrate conﬂicting results. We investigated the effect of large predators on developing subtidal invertebrate communities in cobble-ﬁlled collectors in the southwest Bay of Fundy, Canada. Two predation treatments (exclusion of predators ≥ 7 mm body width or full access for predators &lt; 50 mm) were used to test the effect of large predators, and a partial-cage control tested for caging artefacts. Despite a reduction in the abundance and biomass of large predators, multivariate analyses indicated no effect of predator exclusion on the composition of the prey and micropredator communities. Results indicated that the largest differences were between the predator-access treatment and the other two treatments, which was potentially inﬂuenced by the caging material. There were signiﬁcant but weak positive correlations between the micropredator and the other two communities. Previous studies indicate that at low predation intensity, as seemed to be the case here, other factors may play a stronger role in controlling recruit abundance. Predation control probably varies spatially and temporally, and the inﬂuence of large predators was not likely the driving force for early post-settlement mortality in the invertebrate communities measured in this study.
DOI: 10.6084/m9.figshare.11876481.v1
title: Role of predators in the recruitment of invertebrates in a rocky subtidal community in the southwest Bay of Fundy, NB

description: Predation is potentially an inﬂuential source of early post-settlement mortality of benthic marine invertebrates, but previous studies demonstrate conﬂicting results. We investigated the effect of large predators on developing subtidal invertebrate communities in cobble-ﬁlled collectors in the southwest Bay of Fundy, Canada. Two predation treatments (exclusion of predators ≥ 7 mm body width or full access for predators &lt; 50 mm) were used to test the effect of large predators, and a partial-cage control tested for caging artefacts. Despite a reduction in the abundance and biomass of large predators, multivariate analyses indicated no effect of predator exclusion on the composition of the prey and micropredator communities. Results indicated that the largest differences were between the predator-access treatment and the other two treatments, which was potentially inﬂuenced by the caging material. There were signiﬁcant but weak positive correlations between the micropredator and the other two communities. Previous studies indicate that at low predation intensity, as seemed to be the case here, other factors may play a stronger role in controlling recruit abundance. Predation control probably varies spatially and temporally, and the inﬂuence of large predators was not likely the driving force for early post-settlement mortality in the invertebrate communities measured in this study.
DOI: 10.6084/m9.figshare.11876475
title: SNP variants

description: A set of 10.5 million SNP variants detected by analysis of genome resequencing data from 781 soybean accessions
DOI: 10.6084/m9.figshare.11876388
title: Targeted next-generation sequencing for congenital hypothyroidism with positive neonatal TSH screening_Supplemental_Data

description: Genetic analysis of 24 causative genes using next-generation sequence in 167 Japanese patients. We identified 178 variants in 66.5% (111/167) cases in the fifteen genes, <i>DUOX2, TSHR, PAX8, TG, TPO, DUOXA2, JAG1, GLIS3, DUOX1, IYD, SLC26A4, SLC5A5, SECISBP2, DIO1, </i>and <i>DIO3</i>.
DOI: 10.6084/m9.figshare.11876388.v1
title: Targeted next-generation sequencing for congenital hypothyroidism with positive neonatal TSH screening_Supplemental_Data

description: Genetic analysis of 24 causative genes using next-generation sequence in 167 Japanese patients. We identified 178 variants in 66.5% (111/167) cases in the fifteen genes, <i>DUOX2, TSHR, PAX8, TG, TPO, DUOXA2, JAG1, GLIS3, DUOX1, IYD, SLC26A4, SLC5A5, SECISBP2, DIO1, </i>and <i>DIO3</i>.
DOI: 10.6084/m9.figshare.11876292
title: FastNData.zip

description: hdf5 files containing 7 columns. Column 1 is the identifier (1 to 3) of the counter, He-4 10 bar = 1, He-3 10 bar = 2, He-4 5 bar = 3. Column 3 is the time stamp in 16ns precision. Column 4 is the pulse height associated with the event. Disregard any other column. The Pulse Height Spectrum can be computed by doing the histogram of column 4 gated on a particular counter in column 1. The pdf files specifies int he filename the experimental setup in https://arxiv.org/abs/2002.08153.
DOI: 10.6084/m9.figshare.11876292.v1
title: FastNData.zip

description: hdf5 files containing 7 columns. Column 1 is the identifier (1 to 3) of the counter, He-4 10 bar = 1, He-3 10 bar = 2, He-4 5 bar = 3. Column 3 is the time stamp in 16ns precision. Column 4 is the pulse height associated with the event. Disregard any other column. The Pulse Height Spectrum can be computed by doing the histogram of column 4 gated on a particular counter in column 1. The pdf files specifies int he filename the experimental setup in https://arxiv.org/abs/2002.08153.
DOI: 10.6084/m9.figshare.11876259
title: Supporting Information (DM progression)_JCEM Feb 2020.pdf

description: supplementary materials for JCEM submission (Feb 2020)
DOI: 10.6084/m9.figshare.11876247
title: x_train.mat

description: x_train.mat to be put in the folder /Datasets/Mit-Bih next to the files x_test.mat y_test.mat and y_train.mat.
DOI: 10.6084/m9.figshare.11876259.v1
title: Supporting Information (DM progression)_JCEM Feb 2020.pdf

description: supplementary materials for JCEM submission (Feb 2020)
DOI: 10.6084/m9.figshare.11876247.v1
title: x_train.mat

description: x_train.mat to be put in the folder /Datasets/Mit-Bih next to the files x_test.mat y_test.mat and y_train.mat.
DOI: 10.6084/m9.figshare.11876220
title: Urbanization diverges residents’ landscape preferences but towards a more natural landscape: case to complement landsenses ecology from the lens of landscape perception

description: Analysis of the evolutionary process and the driving forces of the meliorization model (MM) for sustainable land use is the focus of landsenses ecology. Among different landsenses, the relationships between landscape preference changes and land-use dynamics have not been fully explored. Taking Fujian Province as an example, we investigated landscape preference changes during urbanization, which represents the most prominent driver and key process of land-use dynamics in China. Mix-marching data from a survey questionnaire of 2044 residents at different urbanization levels were used to reveal landscape preference changes during urbanization. The findings demonstrated that urbanization, rather than naturalness, was a better predictor of a person’s preferences for natural landscapes. The more urbanized the area that a person resides in, the more they prefer natural landscapes. Furthermore, the younger the population, the higher the preference for natural landscapes is. Teenagers always prefer landscapes with high naturalness regardless of the level of urbanization of where they live. Older people had a lower preference for natural landscapes. There was also greater variation with respect preference for different levels of urbanization: Males less preferred natural landscape compared with females. This study presents potential development patterns of landscape preferences during urbanization considering demographic differences, which may expand our understanding of the dynamic development of the MM.
DOI: 10.6084/m9.figshare.11876235
title: Simulated mean wave direction (3-hourly, 1850.01-2014.12) from FIO-ESM v2.0 historical experiment r1i1p1f1

description: Ocean surface waves; Mean wave direction, FIO-ESM v2.0, CMIP6, Historical simulationDescriptiong: Simulated mean wave direction (3-hourly, 1850.01-2014.12) from FIO-ESM v2.0 historical experiment r1i1p1f1, which is branch from Jan 1, 301 of piControl experiment. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.
DOI: 10.6084/m9.figshare.11876220.v1
title: Urbanization diverges residents’ landscape preferences but towards a more natural landscape: case to complement landsenses ecology from the lens of landscape perception

description: Analysis of the evolutionary process and the driving forces of the meliorization model (MM) for sustainable land use is the focus of landsenses ecology. Among different landsenses, the relationships between landscape preference changes and land-use dynamics have not been fully explored. Taking Fujian Province as an example, we investigated landscape preference changes during urbanization, which represents the most prominent driver and key process of land-use dynamics in China. Mix-marching data from a survey questionnaire of 2044 residents at different urbanization levels were used to reveal landscape preference changes during urbanization. The findings demonstrated that urbanization, rather than naturalness, was a better predictor of a person’s preferences for natural landscapes. The more urbanized the area that a person resides in, the more they prefer natural landscapes. Furthermore, the younger the population, the higher the preference for natural landscapes is. Teenagers always prefer landscapes with high naturalness regardless of the level of urbanization of where they live. Older people had a lower preference for natural landscapes. There was also greater variation with respect preference for different levels of urbanization: Males less preferred natural landscape compared with females. This study presents potential development patterns of landscape preferences during urbanization considering demographic differences, which may expand our understanding of the dynamic development of the MM.
DOI: 10.6084/m9.figshare.11876055
title: Why species richness of plants and herbivorous insects do or do not correlate

description: Data for plant community composition and plant–insect interactions (herbivory) collected in semi-natural grasslands formed on edges of rice fields in Tokyo, Japan.
DOI: 10.6084/m9.figshare.11876055.v1
title: Why species richness of plants and herbivorous insects do or do not correlate

description: Data for plant community composition and plant–insect interactions (herbivory) collected in semi-natural grasslands formed on edges of rice fields in Tokyo, Japan.
DOI: 10.6084/m9.figshare.11876034
title: Additional file 1 of Correction to: Breed susceptibility for common surgically treated orthopaedic diseases in 12 dog breeds

description: Additional file 1. Control population calculations and raw registration numbers.
DOI: 10.6084/m9.figshare.11876028
title: Additional file 1 of Unrestricted prevalence of sedentary behaviors from early childhood

description: Additional file 1. All raw datasets as supplementary information.
DOI: 10.6084/m9.figshare.11876034.v1
title: Additional file 1 of Correction to: Breed susceptibility for common surgically treated orthopaedic diseases in 12 dog breeds

description: Additional file 1. Control population calculations and raw registration numbers.
DOI: 10.6084/m9.figshare.11876028.v1
title: Additional file 1 of Unrestricted prevalence of sedentary behaviors from early childhood

description: Additional file 1. All raw datasets as supplementary information.