cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28113122.v1
title: Supplementary Material for: Exploring Differentially Methylated Genes amongst Preterm birth and Full-term birth

description: Introduction: Preterm birth (PTB) is associated with newborn morbidity and mortality. DNA methylation plays an important role in the development of fetus, thus can also serve as an epigenetic biomarker. Limited epigenetic studies were conducted in regard to PTB. Thus, this study aims to determine whether there are any epigenetic changes amongst PTB vs. term birth (TB).
Methods: In the current study, a total 218 cord blood samples from three different PTB studies have been carried out to explore differentially methylated sites (DMS) and regions (DMRs) associated with PTB. The differential methylation analysis was done after controlling for multiple covariates like age, gender, and disease status. The DMRs (genes and promoters) and DMS (CpG) were investigated in PTB compared to TB infants. 
Results: In PTB infants, genes like RNASE3, HGF, CLEC5A, LIPN, NXF1, and CCDC12 showed hypermethylation (p &lt; 0.05) while the MUC20 and IFNL4 genes showed hypomethylation (p &lt; 0.05) along with other significantly identified genes in this analysis. The eForge analysis of hypermethylated (p &lt; 0.05) CpG sites exhibited enrichment in different fetal tissues like small and large intestine, adrenal gland, fetal heart, lungs, and kidney while hypomethylated CpGs showed no significant enrichment. The GO enrichment analysis of these genes revealed pathways associated with the regulation of immune response. Interestingly, the analysis also observed S100A9 and S100A8 genes, along with their associated CpG sites exhibited hypermethylation (p &lt; 0.05) in PTB infants which plays a crucial role in developing neonatal sepsis. 
Conclusion: Overall, this study revealed differential methylation in immune-related genes related to PTB that could be used as potential epigenetics biomarkers. These findings not only enhance our understanding of PTB pathogenesis but also pave the way for developing innovative diagnostic and therapeutic strategies.
DOI: 10.6084/m9.figshare.28113071
title: <b>Mesh terms for Investigating the Correlation between Abnormalities in Neurodevelopment, Pulmonary function and Musculoskeletal Growth as Potential Contributors to Neonatal Respiratory distress Syndrome: A Systematic Review Protocol</b>

description: Neonates, NRDS, Infants
DOI: 10.6084/m9.figshare.28113071.v2
title: <b>Mesh terms for Investigating the Correlation between Abnormalities in Neurodevelopment, Pulmonary function and Musculoskeletal Growth as Potential Contributors to Neonatal Respiratory distress Syndrome: A Systematic Review Protocol</b>

description: Neonates, NRDS, Infants
DOI: 10.6084/m9.figshare.28113071.v1
title: <b>Mesh terms for Investigating the Correlation between Abnormalities in Neurodevelopment, Pulmonary function and Musculoskeletal Growth as Potential Contributors to Neonatal Respiratory distress Syndrome: A Systematic Review Protocol</b>

description: Neonates
DOI: 10.21227/f265-p076
title: Student achievement in secondary education of two Portuguese schools.

description: This data approach student achievement in secondary education of two Portuguese schools. The data attributes include student grades, demographic, social and school related features) and it was collected by using school reports and questionnaires. Two datasets are provided regarding the performance in two distinct subjects: Mathematics (mat) and Portuguese language (por). In [Cortez and Silva, 2008], the two datasets were modeled under binary/five-level classification and regression tasks. Important note: the target attribute G3 has a strong correlation with attributes G2 and G1. This occurs because G3 is the final year grade (issued at the 3rd period), while G1 and G2 correspond to the 1st and 2nd period grades. It is more difficult to predict G3 without G2 and G1, but such prediction is much more useful (see paper source for more details).
DOI: 10.15468/dl.32wugg
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((89.35277 32.74421,125.64723 32.74421,125.64723 47.25579,89.35277 47.25579,89.35277 32.74421))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tetraena mongolica Maxim."
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052152-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2geqau
title: Occurrence Download

description: A dataset containing 4339118 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Year 2023-2024"
 ]
}

 The dataset includes 4339118 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052150-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ebvf2
title: Occurrence Download

description: A dataset containing 11405339 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 11405339 records from 4493 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052151-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive157156.20241212.9.2
title: Rothia terrae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157156.20251217.10
title: Rothia terrae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157157.20241212.9.2
title: Solibacillus silvestris

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157157.20251217.10
title: Solibacillus silvestris

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157158.20241212.9.2
title: Sporolactobacillus laevolacticus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157158.20251217.10
title: Sporolactobacillus laevolacticus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157159.20241212.9.2
title: Bacillus sinesaloumensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157159.20251217.10
title: Bacillus sinesaloumensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157160.20241212.9.2
title: Virgibacillus dakarensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157160.20251217.10
title: Virgibacillus dakarensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157161.20241212.9.2
title: Bacillus dakarensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.17601406
title: Underwater images of Mayotte reefs, N'Gouja, colony 02 Isopora palifera, Future Maore Reefs (FMR)

description: This dataset is the result of a fieldwork conducted at Mayotte island, over-sea French territory. Mayotte is part of the Comoros archipelago located northward in the Mozambique Channel, western Indian Ocean (WIO). Five well-developed coral reef ecosystems (Aéroport International, Île Blanche, Jolly Roger, N'Gouja, Surprise) representing fringing (F) and inner patch reefs (IPR) within 2-8m depth were sampled during ten field trips between october 2021 and september 2025.
description: We thank NEXTGenerationEU/France Relance, the French Office of Biodiversity (OFB), the Natural marine park of Mayotte (PNMM) and the Institute of Research for Development (IRD) for their financial support to the project 'Future Maore Reefs' coordinated by Dr A. Tribollet (IRD-LOCEAN-IPSL) and Dr F. Guilhaumon (IRD-ENTROPIE) between 2021 and 2023. We thank the OFB, the PNMM and IRD for their financial support to the project 'Future Maore Reefs-2' coordinated by Dr A. Tribollet (IRD-LOCEAN-IPSL) between 2024 and 2026.
description: Scuba divers collected images of individual coral colonies using a sony© RX-100 V camera enclosed in a nauticam© housing.This dataset contains underwater images of :- Site name : N'Gouja- Type : colony 02 Isopora palifera (WORMS AphiaID : https://identifiers.org/worms:730686)- Samplings (dates) : s02 (2022-02), s03 (2022-06), s05 (2023-03), s08 (2024-03), s09 (2024-09), s10 (2025-06)Coded targets and scale bars have been placed in the scene prior to image acquisition. They may be used in Agisoft Metashape as reference points for georeferencing, scaling or as a valid match between images to improve camera alignment procedure during photogrammetric reconstruction.
DOI: 10.5281/zenodo.17601407
title: Underwater images of Mayotte reefs, N'Gouja, colony 02 Isopora palifera, Future Maore Reefs (FMR)

description: This dataset is the result of a fieldwork conducted at Mayotte island, over-sea French territory. Mayotte is part of the Comoros archipelago located northward in the Mozambique Channel, western Indian Ocean (WIO). Five well-developed coral reef ecosystems (Aéroport International, Île Blanche, Jolly Roger, N'Gouja, Surprise) representing fringing (F) and inner patch reefs (IPR) within 2-8m depth were sampled during ten field trips between october 2021 and september 2025.
description: We thank NEXTGenerationEU/France Relance, the French Office of Biodiversity (OFB), the Natural marine park of Mayotte (PNMM) and the Institute of Research for Development (IRD) for their financial support to the project 'Future Maore Reefs' coordinated by Dr A. Tribollet (IRD-LOCEAN-IPSL) and Dr F. Guilhaumon (IRD-ENTROPIE) between 2021 and 2023. We thank the OFB, the PNMM and IRD for their financial support to the project 'Future Maore Reefs-2' coordinated by Dr A. Tribollet (IRD-LOCEAN-IPSL) between 2024 and 2026.
description: Scuba divers collected images of individual coral colonies using a sony© RX-100 V camera enclosed in a nauticam© housing.This dataset contains underwater images of :- Site name : N'Gouja- Type : colony 02 Isopora palifera (WORMS AphiaID : https://identifiers.org/worms:730686)- Samplings (dates) : s02 (2022-02), s03 (2022-06), s05 (2023-03), s08 (2024-03), s09 (2024-09), s10 (2025-06)Coded targets and scale bars have been placed in the scene prior to image acquisition. They may be used in Agisoft Metashape as reference points for georeferencing, scaling or as a valid match between images to improve camera alignment procedure during photogrammetric reconstruction.
DOI: 10.13145/bacdive157161.20251217.10
title: Bacillus dakarensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157162.20241212.9.2
title: Clostridium massiliodielmoense

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157162.20251217.10
title: Clostridium massiliodielmoense

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157163.20241212.9.2
title: Aquibacillus massiliensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157163.20251217.10
title: Aquibacillus massiliensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.17601389
title: Underwater images of Mayotte reefs, N'Gouja, colony 01 Isopora palifera, Future Maore Reefs (FMR)

description: This dataset is the result of a fieldwork conducted at Mayotte island, over-sea French territory. Mayotte is part of the Comoros archipelago located northward in the Mozambique Channel, western Indian Ocean (WIO). Five well-developed coral reef ecosystems (Aéroport International, Île Blanche, Jolly Roger, N'Gouja, Surprise) representing fringing (F) and inner patch reefs (IPR) within 2-8m depth were sampled during ten field trips between october 2021 and september 2025.
description: We thank NEXTGenerationEU/France Relance, the French Office of Biodiversity (OFB), the Natural marine park of Mayotte (PNMM) and the Institute of Research for Development (IRD) for their financial support to the project 'Future Maore Reefs' coordinated by Dr A. Tribollet (IRD-LOCEAN-IPSL) and Dr F. Guilhaumon (IRD-ENTROPIE) between 2021 and 2023. We thank the OFB, the PNMM and IRD for their financial support to the project 'Future Maore Reefs-2' coordinated by Dr A. Tribollet (IRD-LOCEAN-IPSL) between 2024 and 2026.
description: Scuba divers collected images of individual coral colonies using a sony© RX-100 V camera enclosed in a nauticam© housing.This dataset contains underwater images of :- Site name : N'Gouja- Type : colony 01 Isopora palifera (WORMS AphiaID : https://identifiers.org/worms:730686)- Samplings (dates) : s02 (2022-02), s03 (2022-06), s05 (2023-03), s08 (2024-03), s09 (2024-09), s10 (2025-06)Coded targets and scale bars have been placed in the scene prior to image acquisition. They may be used in Agisoft Metashape as reference points for georeferencing, scaling or as a valid match between images to improve camera alignment procedure during photogrammetric reconstruction.
DOI: 10.13145/bacdive157164.20241212.9.2
title: Paenibacillus senegalimassiliensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.17601388
title: Underwater images of Mayotte reefs, N'Gouja, colony 01 Isopora palifera, Future Maore Reefs (FMR)

description: This dataset is the result of a fieldwork conducted at Mayotte island, over-sea French territory. Mayotte is part of the Comoros archipelago located northward in the Mozambique Channel, western Indian Ocean (WIO). Five well-developed coral reef ecosystems (Aéroport International, Île Blanche, Jolly Roger, N'Gouja, Surprise) representing fringing (F) and inner patch reefs (IPR) within 2-8m depth were sampled during ten field trips between october 2021 and september 2025.
description: We thank NEXTGenerationEU/France Relance, the French Office of Biodiversity (OFB), the Natural marine park of Mayotte (PNMM) and the Institute of Research for Development (IRD) for their financial support to the project 'Future Maore Reefs' coordinated by Dr A. Tribollet (IRD-LOCEAN-IPSL) and Dr F. Guilhaumon (IRD-ENTROPIE) between 2021 and 2023. We thank the OFB, the PNMM and IRD for their financial support to the project 'Future Maore Reefs-2' coordinated by Dr A. Tribollet (IRD-LOCEAN-IPSL) between 2024 and 2026.
description: Scuba divers collected images of individual coral colonies using a sony© RX-100 V camera enclosed in a nauticam© housing.This dataset contains underwater images of :- Site name : N'Gouja- Type : colony 01 Isopora palifera (WORMS AphiaID : https://identifiers.org/worms:730686)- Samplings (dates) : s02 (2022-02), s03 (2022-06), s05 (2023-03), s08 (2024-03), s09 (2024-09), s10 (2025-06)Coded targets and scale bars have been placed in the scene prior to image acquisition. They may be used in Agisoft Metashape as reference points for georeferencing, scaling or as a valid match between images to improve camera alignment procedure during photogrammetric reconstruction.
DOI: 10.13145/bacdive157164.20251217.10
title: Paenibacillus senegalimassiliensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157165.20241212.9.2
title: Corynebacterium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.6069/ezn6-1c42
title: Development of Multiple Reaction Monitoring (MRM) assays to identify Brucella abortus proteins in the serum of humans and livestock

description: Brucellosis is important yet neglected zoonotic disease with a considerable public health concern. Despite high endemicity rates in the country, most cases of brucella are underreported due to the lack of diagnostic accuracy of existing assays. Despite considerable advancement in mass spectrometry-based approaches, the utility of these tools in the diagnosis of zoonotic diseases is mainly scarce. In the present study, a targeted Multiple Reaction Monitoring-based mass spectrometry approach (MRM-MS) was developed to screen and identify protein biomarkers for brucellosis in humans and livestock. The selection of proteotypic peptides was carried out by generating in silico tryptic peptides of the brucella proteome. Using bioinformatics analysis, 30 synthetic peptides corresponding to 10 immunodominant Brucella abortus (B. abortus) proteins were generated. MRM -MS assays for the accurate detection of these peptides were optimized using117 serum samples of human and livestock stratified as clinically confirmed (45), suspected (62), and control (10). Using high throughput MRM assays, transitions for four peptides were identified in several clinically confirmed and suspected human and livestock serum samples. Our present study provides the first proof of principle evidence of developing an MRM-based mass spectrometry approach with diagnostic utility for brucellosis.
DOI: 10.13145/bacdive157165.20251217.10
title: Corynebacterium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157166.20241212.9.2
title: Lelliottia nimipressuralis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157166.20251217.10
title: Lelliottia nimipressuralis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157167.20241212.9.2
title: Bacillus horikoshii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.17601344
title: Underwater images of Mayotte reefs, Jolly Roger, colony 15 Favia sp, Future Maore Reefs (FMR)

description: This dataset is the result of a fieldwork conducted at Mayotte island, over-sea French territory. Mayotte is part of the Comoros archipelago located northward in the Mozambique Channel, western Indian Ocean (WIO). Five well-developed coral reef ecosystems (Aéroport International, Île Blanche, Jolly Roger, N'Gouja, Surprise) representing fringing (F) and inner patch reefs (IPR) within 2-8m depth were sampled during ten field trips between october 2021 and september 2025.
description: We thank NEXTGenerationEU/France Relance, the French Office of Biodiversity (OFB), the Natural marine park of Mayotte (PNMM) and the Institute of Research for Development (IRD) for their financial support to the project 'Future Maore Reefs' coordinated by Dr A. Tribollet (IRD-LOCEAN-IPSL) and Dr F. Guilhaumon (IRD-ENTROPIE) between 2021 and 2023. We thank the OFB, the PNMM and IRD for their financial support to the project 'Future Maore Reefs-2' coordinated by Dr A. Tribollet (IRD-LOCEAN-IPSL) between 2024 and 2026.
description: Scuba divers collected images of individual coral colonies using a sony© RX-100 V camera enclosed in a nauticam© housing.This dataset contains underwater images of :- Site name : Jolly Roger- Type : colony 15 Favia sp (WORMS AphiaID : https://identifiers.org/worms:718691)- Samplings (dates) : s02 (2022-02), s03 (2022-06), s05 (2023-03), s08 (2024-03)Coded targets and scale bars have been placed in the scene prior to image acquisition. They may be used in Agisoft Metashape as reference points for georeferencing, scaling or as a valid match between images to improve camera alignment procedure during photogrammetric reconstruction.
DOI: 10.5281/zenodo.17601345
title: Underwater images of Mayotte reefs, Jolly Roger, colony 15 Favia sp, Future Maore Reefs (FMR)

description: This dataset is the result of a fieldwork conducted at Mayotte island, over-sea French territory. Mayotte is part of the Comoros archipelago located northward in the Mozambique Channel, western Indian Ocean (WIO). Five well-developed coral reef ecosystems (Aéroport International, Île Blanche, Jolly Roger, N'Gouja, Surprise) representing fringing (F) and inner patch reefs (IPR) within 2-8m depth were sampled during ten field trips between october 2021 and september 2025.
description: We thank NEXTGenerationEU/France Relance, the French Office of Biodiversity (OFB), the Natural marine park of Mayotte (PNMM) and the Institute of Research for Development (IRD) for their financial support to the project 'Future Maore Reefs' coordinated by Dr A. Tribollet (IRD-LOCEAN-IPSL) and Dr F. Guilhaumon (IRD-ENTROPIE) between 2021 and 2023. We thank the OFB, the PNMM and IRD for their financial support to the project 'Future Maore Reefs-2' coordinated by Dr A. Tribollet (IRD-LOCEAN-IPSL) between 2024 and 2026.
description: Scuba divers collected images of individual coral colonies using a sony© RX-100 V camera enclosed in a nauticam© housing.This dataset contains underwater images of :- Site name : Jolly Roger- Type : colony 15 Favia sp (WORMS AphiaID : https://identifiers.org/worms:718691)- Samplings (dates) : s02 (2022-02), s03 (2022-06), s05 (2023-03), s08 (2024-03)Coded targets and scale bars have been placed in the scene prior to image acquisition. They may be used in Agisoft Metashape as reference points for georeferencing, scaling or as a valid match between images to improve camera alignment procedure during photogrammetric reconstruction.
DOI: 10.13145/bacdive157167.20251217.10
title: Bacillus horikoshii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157168.20241212.9.2
title: Helicobacter canis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive157168.20251217.10
title: Helicobacter canis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.