cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25919/5f8a155aea319
title: Parkes observations for project P1063 semester 2020APRS_18

description: We propose to use the Parkes UWL receiver for monitoring a small sub-set of the FAST-discovered pulsars, with special properties. The Parkes UWL system provides a unique capability for studying the pulsars over wide bandwidths. The observation proposed will provide significant insight into the special emission properties of these new discoveries and facilitate science.
DOI: 10.5066/f7tm78kv
title: An examination of the effect of aerosolized Permanone insecticide on zebra finch susceptibility to West Nile virus

description: Following building an aerosol exposure chamber in which we could expose domesticated zebra finches, we examined the effects of exposure to aerosolized Permanone� 30:30 insecticide (permethrin and piperonyl butoxide in soy oil vehicle) at ~103-106 x potential environmental concentrations on the response to experimental challenge with West Nile virus (WNV). Compared to vehicle control birds, WNV outcome was unchanged (65% of birds produced a viremia) in the �low� exposure (9.52 mg/m3�3.13 SD permethrin) group, but reduced in the �high� exposure (mean 376.5 mg/m3�27.9 SD permethrin) group (30% were viremic) (p &lt; 0.05). After clearing WNV infection, birds treated with Permanone regained less body mass than vehicle treated birds (p &lt; 0.001). Our study suggests that exposure to aerosolized Permanone insecticide at levels exceeding typical application rates has the potential to not change or mildly enhance a bird�s resistance to WNV.
DOI: 10.25919/5f8a16e8b0050
title: Parkes observations for project PX500 semester 2020APRS_10

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries. As the observing time has been purchased this proposal (and the related PX501) does not require TAC grading. The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first, relating to this proposal, will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period. The second type of time will be scheduled in shorter blocks and the data archived with a 10 year embargo.
DOI: 10.5066/f7xg9qd9
title: West Nile virus susceptibility of American singer canaries: Data

description: hree datasets are included: 1) survival of domesticated canaries and American crows following sub-cutaneous challenges ranging from 101 � 105 plaque forming units of West Nile virus. 2) Arbitrary units of WNV detected by RT-PCR or plaque forming units of WNV cultured in vero cells in 4 separate studies. Culture results are indicated for each day post WNV challenge. 3) Weight (mass) changes in grams in canaries and crows each day following WNV challenge. Day 0 (inoculation) set to 0 gms, then each subsequent day is change in gms from previous day.
DOI: 10.5066/f7ng4npp
title: Temperature-Dependent Growth of Geomyces destructans, the Fungus That Causes Bat White-Nose Syndrome

description: White-nose syndrome (WNS) is an emergent disease estimated to have killed over five million North American bats. Caused by the psychrophilic fungus Geomyces destructans, WNS specifically affects bats during hibernation. We describe temperature-dependent growth performance and morphology for six independent isolates of G. destructans from North America and Europe. Thermal performance curves for all isolates displayed an intermediate peak with rapid decline in performance above the peak. Optimal temperatures for growth were between 12.5 and 15.8�C, and the upper critical temperature for growth was between 19.0 and 19.8�C. Growth rates varied across isolates, irrespective of geographic origin, and above 12�C all isolates displayed atypical morphology that may have implications for proliferation of the fungus. This study demonstrates that small variations in temperature, consistent with those inherent of bat hibernacula, affect growth performance and physiology of G. destructans, which may influence temperature dependent progression and severity of WNS in wild bats.
DOI: 10.17632/s8rgscxygp.1
title: Association between common medication triggers and severity of cutaneous immune-related adverse events - Supplement 1

description: Supplemental data for "Association between common medication triggers and severity of cutaneous immune-related adverse events" manuscript
DOI: 10.17632/nk27dkn5d7.1
title: Comparative transcriptome analysis of susceptible and resistant sesame against charcoal rot

description: Sesame (Sesamum indicum L.) is an important oilseed crop with a unique property of regulating hypercholesterolemia. However, its vulnerability to Macrophomina phaseolina (Mp) Tassi (Goid) infection is a serious concern for the sesame growers worldwide. This destructive soil-borne pathogen causes charcoal rot of sesame, leading to high (&gt;50%) yield losses, and most high yielding sesame cultivars of India are susceptible to charcoal rot. Traditionally, agricultural and chemical prevention measures are utilized to reduce the damage caused by M. phaseolina, it has become more important to develop disease-resistant varieties. However, wild type sesame (Sesamum mulayanum) shows a high degree of resistance against many pathogens. To better understand the resistance, exploration of the resistance gene pool through transcriptomics is a key approach.To find out potential defence-related genes, we have performed transcriptome analyses of three sesame genotypes in control and infected state. The founder sesame genotypes are susceptible Indian cultivar S. indicum and wild type S. mulyanum. Further, these contrasting lines were used as female and male parents of a recombinant line respectively. This study will help us to analyze the global gene expression and the molecular basis of interactions between sesame and Mp, particularly with respect to mechanisms of resistance and the basal defence response.
DOI: 10.17632/x4n95844jg.1
title: ROT-AJOT Panerai et al-raw data

description: Objective: To define whether telephone-based reality orientation therapy (T-ROT) can improve cognition, mood, neuropsychiatric symptoms of patients with neurocognitive disorders forced to isolation, and relieve the burden of distress of their caregivers. Design: Nonrandomized interventional comparison study. Participants: Twenty-seven patients (14 in the experimental patient group and 13 in the control patient group) with Major Neurocognitive Disorder (M-NCD) and their primary caregivers. Outcomes and measures: Improvement in cognitive and behavioral symptoms of patients with M-NCD by T-ROT and assessment of any correlation between changes in clinical conditions of patients and their caregiver’s stress. T-ROT was administered to patients during 10 sessions after a comprehensive assessment, including the Telephone Mini-Mental State Examination, the Neuropsychiatric Inventory Questionnaire, and two measures for depressive symptoms, administered both at baseline and at program discharge. Results: T-ROT significantly outperformed non-treatment on all depression, behavior, cognition, and caregiver burden measures. Conclusions and Relevance: T-ROT combined with emotional support seems to be a valid tool for monitoring and managing the behavioral symptoms of patients with NCD forced to isolation.
DOI: 10.17632/wyzfstbvk2.1
title: PSD Distributions

description: This repository contains source files for the evaluation of a new class of probability distributions, called PSD distributions, and for comparing their performance with that of the beta distribution, in terms of agreement with a transported PDF (TPDF) distribution for the mixture fraction. Source file for evaluation of the new distributions: ./PSD.h Build file for the TPDF simulations: ./TPDFsource/build.sh Build file for the post-processing script: ./buildPost.sh
DOI: 10.17632/8mjxw2jddv.1
title: LINF_010010200

description: fatty acyl CoA synthetase 2
DOI: 10.5066/f7s75ddd
title: Seroprevalence of West Nile virus in feral horses on Sheldon National Wildlife Refuge, Nevada, United States 2004-2006, 2008 and 2009

description: We screened 1,397 feral horses ( Equus caballus ) on Sheldon National Wildlife Refuge, Nevada, United States, for IgM and IgG against flavivirus during 2004�2006, 2008, and 2009. Positive serum samples were tested for neutralizing antibodies to West Nile virus (WNV) and St. Louis encephalitis virus (SLEV). One animal was positive for antibody against WNV in 2004, but all others tested in 2004�2006 were negative. In 2008 and 2009, we found evidence of increasing seropositive horses with age, whereas seroprevalence of WNV decreased from 19% in 2008 to 7.2% in 2009. No horses were positive for antibody against SLEV. Being unvaccinated, feral horses can be useful for WNV surveillance.
DOI: 10.17632/zdzg6vg8ty.3
title: Laser vaporization of the cervix is associated with increased risk of preterm birth and rapid labor progression in subsequent pregnancies

description: Raw data of the participants.
DOI: 10.17632/kdwgk8rh7f.1
title: DIB-D-20-01752-Data on growth performance, proximate composition, and fatty acid content of edible oyster (Crassostrea spp.), farmed on shellstring along Cox’s Bazar Coast

description: RAW data on oyster growth, proximate and fatty acids
DOI: 10.17632/3wp859vzn8.1
title: Data from: Head up displays are a submission signal in the group-living daffodil cichlid

description: Data from a study examining the effect of the head up display on the latency to further aggression from dominant group members in the cooperatively breeding daffodil cichlid fish. Paper available here: https://doi.org/10.1016/j.beproc.2020.104271
DOI: 10.17632/ppk4dn9dn2.1
title: Dataset supporting Atmospheric emission changes from 2005 to 2020 and focused on COVID-19 pandemic lockdown in Argentina

description: Dataset related to the activity levels (fuel consumed) and their estimated monthly pollutant emissions for CO2, CH4, N2O, NOx, CO, NMVOC, SOx, TSP, PM10, PM2.5 and BC from various sectors as private road transport, freight , public transport and agriculture machines, thermal power plants, residential, commercial, and governmental (January 2005 to April 2020) in Argentina. In addition, dataset shows that during the months with the greatest restrictions of COVID-19 pandemic lockdown in Argentina (March and April 2020), the monthly data is lower than historical average (2005-2020) for most of the pollutants analyzed.
DOI: 10.17632/vjzrrzm5wm.1
title: Bearing 6213 OR Dataset

description: Vibration of rolling ball bearings under various speed conditions. For detailed explaination, please, see *.docx.
DOI: 10.17632/vj24br7gnt.2
title: Major and trace elements in sediments and soils of the Zerafshon area, north - west Tajikistan

description: The data set contains 8816 numerical values regarding the content of 9 major elements as oxides: SiO2, TiO2, Al2O3, FeO, MnO2, MgO, CaO, K2O, and Na2O (in %) and 29 trace elements: Sc, V, Cr, Co, Ni, Zn, As, Br, Rb, Sr, Zr, Sb, Cs, Ba, La, Ce, Nd, Sm, Eu, Gd, Tb, Tm, Yb, Hf, Ta, W, Hg, Th, and U (in mg/kg) as determined by Epithermal Neutron Activation Analysis in 116 samples of sediments and soils, corresponding to 116 different sampling points at an altitude between 883 and 3629 m, all along the Tajik cectoer of Zarafshon river and its tributaries.
DOI: 10.17632/4tmb8dm9j9.1
title: DoNOF: An open-source implementation of natural-orbital-functional-based methods for quantum chemistry

description: The natural orbital functional theory (NOFT) has emerged as an alternative formalism to both density functional (DF) and wavefunction methods. In NOFT, the electronic structure is described in terms of the natural orbitals (NOs) and their occupation numbers (ONs). The approximate NOFs have proven to be more accurate than those of the density for systems with a significant multiconfigurational character, on one side, and scale better with the number of basis functions than correlated wavefunction methods, on the other side. A challenging task in NOFT is to efficiently perform orbital optimization. In this article we present DoNOF, our open source implementation based on diagonalizations that allows to obtain the resulting orbitals automatically orthogonal. The one-particle reduced-density matrix (1RDM) of the ensemble of pure-spin states provides the proper description of spin multiplets. The capabilities of the code are tested on the water molecule, namely, geometry optimization, natural and canonical representations of molecular orbitals, ionization potential, and electric moments. In DoNOF, the electron-pair-based NOFs developed in our group PNOF5, PNOF7 and PNOF7s are implemented. These JKL-only NOFs take into account most non-dynamic effects plus intrapair-dynamic electron correlation, but lack a significant part of interpair-dynamic correlation. Correlation corrections are estimated by the single-reference NOF-MP2 method that simultaneously calculates static and dynamic electron correlations taking as a reference the Slater determinant formed with the NOs of a previous PNOF calculation. The NOF-MP2 method is used to analyze the potential energy surface (PES) and the binding energy for the symmetric dissociation of the water molecule, and compare it with accurate wavefunction-based methods.
DOI: 10.17632/k6nmr6ytpf.1
title: Traditional and TLS-based forest inventories of Beech and Pine forests in Southern Italy

description: The dataset reports data collected in 24 15-m-radius circular plots, 12 of which were dominated by Beech (Fagus sylvatica L.) and 12, by Pines (Pinus nigra subsp. laricio). In detail, this dataset is made of: 1) tree-level data, comprising a total of 1709 trees, with information related to field-based forest inventory such as the diameter at breast height (DBH); 2) las file of TLS survey; 3) geographic information on sampling plots and study area; 4) plot-level information related to the time for conducting both traditional field- and TLS-based forest inventories. This data collection was funded with the contribution of the Italian Ministry of Agricultural, Food, and Forestry Policies (MiPAAF) sub-project “Precision Forestry” (AgriDigit program) (DM 36503.7305.2018 of 20/12/2018).
DOI: 10.17632/4ypj4xxp68.7
title: The description of the model for "Molecular mechanisms of action determine inhibition of paroxysmal depolarizing shifts by NMDA receptor antagonists in rat cortical neurons"

description: The program code, executable files and full list of model parameters and settings used for the modelling of the paroxizmal depolorizing shift in the pyramydal cells and fast-spiking interneurons in prefrontal cortex
DOI: 10.17632/pbkft648ww.1
title: Diverse CRISPR-Cas complexes require independent translation of small and large subunits from a single gene
DOI: 10.17632/yktygdmgm4.1
title: CMRPG6F0371

description: raw data of CMRPG6F0371 Background: Emergency transfusion strategies for patients with upper gastrointestinal bleeding (UGIB) have not been well developed. The BISHE is a recently developed scoring system for massive transfusion but has not been validated. We evaluated the predictive ability of the BISHE score and that of a revised scoring system to improve care for patients with UGIB. Methods: This prospective study included patients who were admitted to our hospital between July 1, 2016 and June 30, 2019 and required massive transfusion (defined as receiving three units of red blood cells over one hour) in the emergency department. The predictive accuracy of the BISHE score and that of the revised scoring system were compared using area under the receiver-operating characteristic (AUROC) curve analysis. Results: Liver cirrhosis, an international normalized ratio &gt;1.5, and hemoglobin &lt;8.0 g/dL were independently associated (p&lt;0.05) with massive transfusion. The revised scoring system discriminated successfully between patients with UGIB requiring massive transfusion and their counterparts who did not (AUROC 0.82, 95% confidence interval 0.78–0.86) and performed better than the BISHE score (AUROC 0.73, 95% confidence interval 0.69–0.76; p=0.004). Conclusions: Compared with the BISHE score, the revised scoring system was better able to identify patients likely to require massive transfusion.
DOI: 10.17632/w8h74c6hsy.1
title: Supplementary Data on the Docking of Phytoconstituents of Betel Leaf on SARS-CoV-2

description: Data on the Docking of Phytoconstituents of Betel Leaf on SARS-CoV-2
DOI: 10.17632/j2k7d4pzbk.3
title: Article Title: Complete chloroplast genomes of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships

description: This data includes supplementary results of the article: Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships. Supplementary data included Table S1: Distribution of SSRs in L. acutangula and L. aegyptiaca chloroplast genomes and Table S2: A set of conserved genes found in Luffa and other species of chloroplast genomes.
DOI: 10.17632/4mfncktmzx.1
title: Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships

description: This data includes supplementary results of the article: Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships.
DOI: 10.17632/d69pzg3syh.1
title: GSK3B inactive conformation PDB files

description: Glycogen synthase kinase-3β (GSK3β) controls many physiological pathways, and is implicated in many diseases including Alzheimer’s and several cancers. GSK3β-mediated phosphorylation of target residues in microtubule-associated protein tau (MAPTAU) contributes to MAPTAU hyperphosphorylation and subsequent formation of neurofibrillary tangles. Inhibitors of GSK3β protect against Alzheimer’s disease and are therapeutic for several cancers. A thiadiazolidinone drug, TDZD-8, is a non-ATP-competitive inhibitor targeting GSK3β with demonstrated efficacy against multiple diseases. However, no experimental data or models define the binding mode of TDZD-8 with GSK3β, which chiefly reflects our lack of an established inactive conformation for this protein. Here, we used metadynamic simulation to predict the three-dimensional structure of the inactive conformation of GSK3β. Our model predicts that phosphorylation of GSK3β Serine9 would hasten the DFG-flip to an inactive state. Molecular docking and simulation predict the TDZD-8 binding mode to be inactive, and are consistent with biochemical evidence for the TDZD-8–interacting residues of GSK3β. We also identified the pharmacophore and assessed binding efficacy of second-generation TDZD analogs (TDZD-10 and Tideglusib) that bind GSK3β as non-ATP-competitive inhibitors. Based on these results, the predicted inactive conformation of GSK3β can facilitate the identification of novel GSK3β inhibitors of high potency and specificity. Metadynamics simulated theoretical models of DFG-out (inactive) conformation of GSK3B as well as its TDZD-8 bound form can be downloaded here.
DOI: 10.17632/f5y2vtrnzh.1
title: Dataset on studies about physical-digital play technology and developmentally relevant child behaviour

description: This data set includes the categorisation of 633 studies retrieved from academic data bases ACM Library, ERIC, PsycINFO, specialised academic conferences and journals working on the areas of Play + Technology + Child development. The articles were searched in May 2018 and categorised in terms of : Entries not related to play for its own sake (connected to learning or other aim instead) n=311 Entries not connected to developmentally relevant behaviours n=307 Entries not analysing analogue behaviour in digitally enhanced contexts n=212 Entries not studying typically developing 0-12 year olds n=160 Entries that were not empirical studies n=96 Entries not specifying sample size and/or participants' age* n=24 Entries that were extended abstracts or did not provide enough information about study* n=16 Entries that were quantitative studies with 10 or less cases* n=5 Entries that were not peer reviewed* n=3 Entries that were not published in English n=0 *Criterion coded over full text of a subset of 123 pre-selected entries only
DOI: 10.17632/hjnfzm949y.1
title: Human Skin Microbiome Data (16S rRNA sequencing) dataset #2

description: 16S rRNA sequencing data on human skin microbiome samples collected before and after swimming in the ocean. This dataset contains raw sequencing data contained in fasta and qual files produced from an Ion Torrent PGM sequencer. There were 2 sampling occurrences (041218 and 092718) and each occurrence has an associated fasta and qual file. This dataset contains the 092718 sampling data only due to storage restrictions. The other dataset is published separately. Our research has shown that the human skin microbiome is altered after swimming in the ocean. Normal commensals were washed off and simultaneously, exogenous bacteria were deposited on the skin. QIIME was used for initial analysis and indicated that the abundance and diversity of microbial communities on the skin increased after swimming and these changes persisted for more than 24 hours. Downstream analysis using PICRUSt to predict functional metagenomics indicated that there was an increase in antibiotic resistance genes, antibiotic biosynthesis genes, and virulence factor genes on the skin after ocean water exposure.
DOI: 10.17632/kv3bnscc8b.2
title: Positron_electron_rrea

description: RREA generation probability with an electron/positron seed regarding the paper "Generation possibility of gamma-ray glows induced by photonuclear reactions" by Gabriel Diniz, Ivan Soares Ferreira, Teruaki Enoto and Yuuki Wada. Following simulation codes by Sarria et al. (2018), available at: https://gmd.copernicus.org/articles/11/4515/2018/
DOI: 10.17632/4xk5w69yr5.1
title: Prioritized experience replays on a hippocampal predictive map for learning

description: Original datasets obtained from the all rats in the paper "Prioritized experience replays on a hippocampal predictive map for learning" by Igata et al.
DOI: 10.17632/f26mt7vhs5.1
title: Single-lysine precursor ion labelling in KARMA assays for a subset of proteins (Mlp1 bait)

description: Supplementary analyzed data from Manuscript: TITLE: Maturation kinetics of a multiprotein complex revealed by metabolic labeling. JOURNAL: CELL. Article Type: Research Article Authors: Evgeny Onischenko*, Elad Noor*, Jonas S. Fischer*, Ludovic Gillet, Matthias Wojtynek, Pascal Vallotton, Karsten Weis *Equally Contributing Authors Corresponding Authors: Evgeny Onischenko and Karsten Weis Related to Figures 2 and S1; Table S4 Single-lysine precursor ion labelling in KARMA assays for a subset of proteins (Mlp1 bait). The target protein complex is isolated from cell lysates by affinity pulldowns at several time points following the onset of metabolic labeling, tryptically digested and analyzed with LC-MS on an Orbitrap mass-spectrometer. The MS2 fragmentation spectra are acquired in a DIA mode for all samples. Zero time point samples (containing only light lysine) are additionally analyzed in a DDA mode to produce assay spectral libraries. Peptide intensities are extracted from the DIA datasets with Spectronaut software (Biognosis) using complementary assay spectral libraries. Individual plots: Protein labeling H/(H+L) in each post-labeling sample (red track) is determined based on the summed intensities of light (L) and heavy (H) constituent high quality precursor ions (green tracks). Low-quality precursor ions are excluded from quantification (grey tracks). y-axis: fractional labeling H/(H+L); x-axis: individual samples (3 replicates and 5 timepoints)