cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17105783.v1
title: Hydroperiod and functional dispersion (birds, plants and aquatic macroinvertebrates) in the Prairie Pothole Region of Alberta

description: We provide both data and R Code.<br>The data provide the functional dispersion for birds(y2), plants (y1) and aquatic macroinvertebrates (y2) and pond permanence in wetlands surveyed between 2013-2014 in the Prairie Pothole Region of southern Alberta. To measure the functional dispersion of each taxon, we used Rao’s quadratic entropy, which does use the weighted mean distance of each species to the group centroid, where weights are based on species relative abundances. We used four proxies for wetland pond permanence, and these include approximate number of days a wetland contained water(x1), maximum water depth observed during the survey period(x2), ratio of water amplitude (i.e., maximum – minimum observed water depths) to maximum depth (x3), and an index of evaporative losses to the atmosphere relative to water inputs based on stable isotopes analysis (x4). We relativized both the biological and ponded permanence variables by dividing each cell by the column maximum.<br>The provided code details how we constructed structural equation models using these data.
DOI: 10.6084/m9.figshare.13670500.v1
title: A robot-assisted therapy to increase muscle strength in hemiplegic gait rehabilitation. SPIRIT 2013 Checklist

description: A robot-assisted therapy to increase muscle strength in hemiplegic gait rehabilitation, clinical trial protocol according to SPIRIT (Standard Protocol Items: Recommendations for Interventional Trials)
DOI: 10.6084/m9.figshare.3113074.v1
title: Study data

description: Table of the subject characteristics and treatment outcomes in a double-blind, domiciliary, self-administered tDCS study.<br><br>"Pre" and "Post" refer to the beginning of the first training & treatment session, and to the follow-up visit 4 weeks after the first session, respectively.<br><br>Q1–Q8 refer to questions in a non-standard questionnaire that was mapping the user experience aspects of the trial. There were eight yes/no-questions regarding the treatment:<br>Q1) “Did the treatment have any effect on tinnitus loudness?”, <br>Q2) “Did the treatment have any effect on tinnitus annoyance?”, <br>Q3) “Did the treatment have any effect on your mood?”, <br>Q4) “Did the treatment cause any adverse effects?”, <br>Q5) “Did you experience any uncomfortable sensation on your skin during treatment?”, <br>Q6) “Based on your user experience, was the device you were given a sham device?”, <br>Q7) “Did the treatment have any effect on you falling asleep or on the quality of sleep?”, <br>Q8) “Was it difficult to prepare the device and accessories before treatment?”. <br>Patients were also encouraged to elaborate their answers in free-form. These answers were collected right after the ten-day treatment period had finished.<br>
DOI: 10.17632/9bbnvjxggm
title: Dados de pesquisa no Google Bard 2023

description: Dados da pesquisa realizada na ferramenta Google Bard, com 10 expressões de buscas, executadas em julho de 2023, com as três opções de rascunho, por meio de um acesso gratuito.
DOI: 10.17632/pk9nnbdd6f
title: Distribution of Kirkendrup-Jenišovice-type cups, Tiszavasvári-type strainers and Egyek-type cups/ladles

description: Version 1.0 was published in 2022 and used for the paper titled ‘Tarbay, J. G., The Hajdúböszörmény-Csege-halom Hoard and its Related Finds in Europe. Praehistorische Zeitschrift 98/1, 2023, 88–135.’ https://doi.org/10.1515/pz-2022-2025 

Version 2.0 was published in 2025, including updates for Kirkendrup-Jenišovice-type cups mainly from ‘Hladíková, K., Makarová, E. (2022). Final Bronze Age hoard with a cup of a Jenišovice type from Bzince pod Javorinou. Študijné Zvesti Archeologického Ústavu Slovenskej Akadémie Vied, 69/1, 2022, 65–95.’ https://doi.org/10.31577/szauasav.2022.69.3
DOI: 10.6084/m9.figshare.8863535.v1
title: Composite multi-objective optimization on a new collaborative vehicle routing problem with shared carriers and depots

description: This study proposes a novel logistics collaboration model to address the collaborative vehicle routing problem that involves shared carriers and depots (CVRP-SCD). This is inspired by the fact that a depot often has orders for multiple carriers, and a carrier often delivers orders to multiple depots. This problem involves decreasing transportation distances and improving capacity utilization by extending supply-side unilateral logistics collaborations to simultaneously consider collaborations between supply- and demand-sides. Further, the proposed CVRP-SCD model uses a composite objective that is a weighted sum of four objectives — including quality, reliability, cost, and time — to accurately evaluate and analyze the efficiency improvement. An extended variable neighborhood search (EVNS) algorithm is presented based on three matrices, including the carrier collaboration matrix (CCM), depot collaboration matrix (DCM), and transportation sequence matrix (TSM). This algorithm aims to address the trade-offs among multiple objectives for the CVRP-SCD problem by incorporating new operators based on specific features involved in the problem.
DOI: 10.6084/m9.figshare.28254350.v1
title: Data

description: Data from the paper: An automated photo-isomerisation and kinetics characterisation system for molecular photoswitches
DOI: 10.17632/mfg4v5ckgk
title: Microbiological risks to health associated with the release of antibiotic-resistant bacteria through hospital wastewater

description: Data sets of project: Microbiological risks to health associated with the release of antibiotic-resistant bacteria through hospital wastewater
DOI: 10.6084/m9.figshare.1236602.v1
title: Lifemine: Birds

description: Contains every available avian mitochondrial coding sequence available on Genbank as of April 2014. Where mutliple genes were included in a single Genbank accession, each coding sequence has been individually listed. Coverage of 97,704 sequences for 7,383 species (Approximately 73% of all accepted bird species). Naming follows Birdlife International, valid as of April 2014.
DOI: 10.6084/m9.figshare.22303462.v1
title: Magnetic Field Data

description: Magnetic field data taken in March 2022 on the PEPL RMFv2 thruster operating at 45 sccm Xe flow, 2 kA pk-pk RMF current, 180 G peak bias field strength, 125 us pulse duration
DOI: 10.6084/m9.figshare.7479368.v1
title: Data used in 10.1007/s10021-018-0297-2

description: Original data used in paper:<br>Kulha, N; Pasanen, L; Holmström, L; De Grandpré, L; Kuuluvainen, T; Aakala, T 2018. At What Scales and Why Does Forest Structure Vary in Naturally Dynamic Boreal Forests? An Analysis of Forest Landscapes on Two Continents. Ecosystems. DOI: 10.1007/s10021-018-0297-2<br>
DOI: 10.6084/m9.figshare.19782517.v2
title: Supplementary Tables

description: Supplementary Tables
DOI: 10.6084/m9.figshare.28498397.v1
title: Respuestas Estudiantes Encuesta de movilidad

description: Survey on mobility patterns of university studentsYear: 2024
DOI: 10.17632/k4w8k846jc
title: 3D LiDAR and Photogrammetry Scans of a Stilt House in Tai O Village - 2022 - Case 023157

description: This data includes a point cloud file from a combined photogrammetric and LiDAR scan of a stilt house in Tai O Village. The house is designated "Case 023157" in the research project record. Researchers collected the scan using a single, approximately 10 minute walk-through of the house with the Leica-brand BLK2Go model 3D environment scanner. The scan describes the interior and partial exterior of a stilt house in high detail and color. The scan has been decimated to a voxel size of 5 mm to reduce file size. The data provides clear enough rendering of the physical conditions of the house to allow interpretation of the scan into description of the house's construction, contents, and spatial use. The data is available under embargo of one year to protect the personal information of residents of the house, provided for purposes of digital conservation of the building, and for interpretation of the house's physical conditions and interior contents through further research. More detailed information on the dataset, including the date the scan was conducted, the location of the house, and related interview and survey datasets are available upon reviewed request.
DOI: 10.17632/md6nkbbcn4
title: Data for: Cyclic diarylheptanoids deoxycymodienol and isotedarene A from Zostera marina (Zosteraceae)

description: Voucher specimen of Zostera marina collected near Kiel.
DOI: 10.6084/m9.figshare.14994777.v1
title: channelList.csv

description: List of channels that deal with politics and news disclosure in the French YouTube landscape.Data used in the work: "Fake views, real trends.The crucial role of time in the authentication of engagement metrics"
DOI: 10.17632/xp39p9xpfw
title: Journal Test

description: The data support the thesis for the additional data.
DOI: 10.17632/xvgf59n75k
title: Geographic patterns of the number of root canals in permanent molars

description: This systematic review focuses on the quantitative synthesis of the results of primary studies not to estimate a particular effect, but to generalize about the number of root canals in permanent molars globally. A narrative synthesis of the findings was made, grouping the studies by geographic regions and describing the reported prevalences of different root canal configurations (number of canals) in maxillary and mandibular molars for each population.
Global and regional heat maps, plots and tables was generated showing the geographic distribution of the prevalence of different root canal number configurations in maxillary and mandibular molars. This will allow spatial patterns to be clearly visualized.
For the sensitivity analysis of the studies, we performed descriptive statistics separately for each group and compared the results to assess the impact of methodological quality.
RStudio® 2024.04.1 Build 748 will be used for data processing
DOI: 10.6084/m9.figshare.19499924.v1
title: patches and local annotations, slide 059, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.28357319.v1
title: Annotation of Cucurbita Genomes

description: Annotations and Related Information about Cucurbita Genomes.
DOI: 10.17632/vrz6gm7nhp
title: model code alluvial peatlands (Swinnen et al., 2021 - Biogeosciences)

description: This dataset contains the Matlab code (.m-files) used for the simulations in Swinnen et al., 2021 - Biogeosciences.
The original 1D version of the Digibog model, on which this code is based can be found in the supplementary material of (Morris et al., 2015 - Geophysical Research Letters).
The original version of the STREAM model, on which this code is based can be found on https://research.vu.nl/ws/portalfiles/portal/1936669/f12.pdf.
DOI: 10.6084/m9.figshare.27141516.v2
title: Raw image data - DNA-PAINT on 100 nm gold nanospheres

description: For immobilizing, gold NPs (CTAB-coated 100 nm nanospheres obtained from Nanoseedz, product NS-100-50), 500L of stock solution was centrifuged at 1500 rcf for 3 mins and the pellet was re-dispersed in 250 L of 1mM CTAB in milliQ water to obtain 2x concentrated solution. Right before spin-coating the particles on the thiolated coverslips, the nanospheres are heated to 30 degrees Celsius for 1 minute and sonicated for 30 seconds to minimize agglomeration. The nanospheres are then immobilized by spin-coating (at 2000 rpm for 1 min) on the thiolated coverslip. The coverslips with GNS are generously rinsed with methanol, phosphate-buffered saline (PBS), and water, to get rid of the residual CTAB and weakly-bound particles.The GNS were then incubated with a mixture of 5 M of single-stranded DNA docking strands (5' SH-CAT CAT CAT ACG CTT CCA ATA ATA CAT CTA-3', from Integrated DNA Technologies) and 1mM tris(2-carboxyethyl)phosphine hydrochloride in citrate buffer (10 mM, pH 3, 1 M NaCl) for surface functionalization. After two hours, slides were rinsed with PBS and buffer B (5 mM Tris-HCl, 10 mM MgCl2, 1 mM EDTA, pH 8.0) to wash away free DNA strands. The slides were stored in buffer B in a humidity chamber, until the optical measurement.An inverted total internal reflection fluorescence (TIRF) microscope with a 100x/NA 1.49 objective (Nikon) was used for the DNA-PAINT experiment. Once the glass slide with GNS was mounted on the sample stage, buffer B was carefully removed, and then 50L of 200 pM of complementary imager strands (3' TAT GTA GAT C-5', from Integrated DNA Technologies) with ATTO655 diluted in Buffer B was drop-casted with a pipette onto the slide. The sample was illuminated with a 637 nm laser (Coherent® OBIS™ FP 1193837 | 637nm LX 100mW) with a power density of 3.98 kW/cm<sup>2</sup>, the intensity time traces were recorded with a CMOS camera (Prime BSI Scientific CMOS, physical pixel size 6.5 m). The dichroic mirror (ZT640rdc-UF2, Chroma Technology) and several filters such as a notch filter (ZET635), a long-pass filter of 650 nm (Thorlabs) and a bandpass filter (center wavelength 700 nm, bandwidth of 75 nm, Thorlabs) are used in the detection path to get high signal-to-noise ratio. Hundreds of PSFs were obtained from single gold nanospheres from 18000 frames recorded at 10 fps.
DOI: 10.6084/m9.figshare.14258408.v3
title: Norfish 08 Norwegian/Swedish Bohuslän Herring Landings 1520–1809

description: Today, Bohuslän is a Swedish region by the Skagerrak coast between the Oslo fjord and modern Gothenburg. In the medieval period to 1658 it was ruled by Norwegian and Danish kings. The region enjoyed a large herring fishery in the second half of the 16th century. In 1658, under the Treaty of Roskilde, Bohuslän was ceded to the Swedish kingdom. Under Swedish control, commercial herring fishing grew again in the latter half of the 18th century with several fishing communities springing up along the coast.
DOI: 10.6084/m9.figshare.16982077.v1
title: Cld Phylogenetic Tree

description: cld-tree.tar.gz contains the Cld phylogenetic tree for this dataset and the sequences and alignments used to build the tree. The specific files in this gzipped tarball are:<br>cld.faa: protein Cld sequences (FASTA format)cld.aln: protein Cld alignment (FASTA format)cld-trimmed-alignment.aln: The Cld alignment trimmed to positions where 80% of sequences have an amino acid at that position FASTA format.cld-trimmed-alignment.nwk: Phylogenetic tree created from the trimmed alignment with FastTree (Newick format).<br>
DOI: 10.6084/m9.figshare.21769136.v1
title: Supplementary Material for: Olfactomedin-4-Positive Neutrophils in Neonates: Link to Systemic Inflammation and Bronchopulmonary Dysplasia

description: <b><i>Introduction:</i></b> Little is known about the interplay between neutrophil heterogeneity in neonates in health and disease states. Olfactomedin-4 (OLFM4) marks a subset of neutrophils that have been described in adults and pediatric patients but not neonates, and this subset is thought to play a role in modulating the host inflammatory response. <b><i>Methods:</i></b> This is a prospective cohort of neonates who were born between June 2020 and December 2021 at the University of Cincinnati Medical Center NICU. Olfactomedin-4-positive (OLFM4+) neutrophils were identified in the peripheral blood using flow cytometry. <b><i>Results:</i></b> OLFM4+ neutrophil percentage was not correlated with gestational age or developmental age. Neonates with sepsis had a higher percentage than those without the condition, 66.9% (IQR 24.3–76.9%) versus 21.5% (IQR 10.6–34.7%), respectively, <i>p</i> = 0.0003. At birth, a high percentage of OLFM4+ neutrophils was associated with severe chorioamnionitis at 49.1% (IQR 28.2–61.5%) compared to those without it at 13.7% (IQR 7.7–26.3%), <i>p</i> &lt; 0.0001. Among neonates without sepsis, the percentages of OLFM4+ neutrophils were lower in the BPD/early death group compared to those without BPD, 11.8% (IQR 6.3–29.0%) versus 32.5% (IQR 18.5–46.1%), <i>p</i> = 0.003, and this retained significance in a multiple logistic regression model that included gestational age, birthweight, and race. <b><i>Conclusion:</i></b> This is the first study describing OLFM4+ neutrophils in neonates and it shows that this neutrophil subpopulation is not influenced by gestational age but is elevated in inflammatory conditions such as sepsis and severe chorioamnionitis, and lower percentage at birth is associated with developing bronchopulmonary dysplasia.
DOI: 10.17632/xf8k4gn4zk
title: The Significance of Sociology in the 4th Industrial Revolution

description: The 4th industrial revolution is clearly the paradigm that most of the people from the past have really been dreaming of. In fact, if there could be much more superior than the 4th industrial revolution, people would be aiming for it drastically. Evidently, 4IR have been very helpful in making society to progress and develop from simple to complex. The luminous ideas and brilliance of the 4IR have caused so much blindness and neglected the importance of objectivity and subjectivity because most of the things in the status quo seem run by technology and created out of artificial intelligence.
DOI: 10.6084/m9.figshare.14603934.v4
title: HSV-2 primer and qPCR Ct values

description: A primer that is specific to Herpes Simplex Virus 2 (HSV-2) DNA. HSV-1 DNA is not amplified by this primer. The Ct values of the designed primer is given here.
DOI: 10.6084/m9.figshare.27311484.v1
title: Dataset and species distribution modeling procedure performed in "Crossing borders: Connectivity analyses reveal potential patterns of range expansion of the Northern raccoon in Europe"

description: "Raccoon - occurrences&backgrounds.Rdata" contains a table with environmental characteristcs at occurrence and background locations for raccoon in its native range.<br>"Raccoon species distribution models.R" is the script used to perform variable selection and regularization of model parameters by using spatially-separated testing data.<br>"Output maps.zip" contains the geoTIFF maps of suitaiblity, resistance, and connectivity for the raccoon in Europe, along with a raster indicating areas outside of model calibration, and .qml files that can be used to visualize the maps as they are presented in the paper.
DOI: 10.6084/m9.figshare.28245896.v1
title: Prediction of Response to Immunotherapy based on scRNA-seq analysis

description: Immune checkpoint blockade (ICB) therapy has demonstrated remarkable treatment efficacy in a diverse range of cancers. However, it faces the challenge that only a small proportion of patients benefit from it. Using single-cell RNA-sequencing (scRNA-seq) data to predict patients' responses to ICB is a potential strategy for realizing precision medicine in ICB therapy.We set up an accessible pipeline for scRNA-seq data obtaining and analysis in the context of clinical use, and develop a tool named RedeTIL which can analyze single-cell features, including cell abundance and spatial topology of cells, to predict ICB-response. In order to demonstrate the predictive strength of scRNA-seq data, we obtained scRNA-seq data from 11 colorectal cancer (CRC) patients undergoing anti-PD-1 therapy according to our setted pipeline. Besides we collected publicly available scRNA-seq data of 39 breast cancer patients prior to receiving anti-PD-1 therapy, and data derived from 427 patients/samples across 15 tumor types for which objective response rates of anti-PD-1 or anti-PD-L1 were already reported. We used RedeTIL to extract these single-cell-derived features and then correlated them with clinical outcomes.Correlation analysis between single-cell based features and clinical outcomes shows the strong predictive strength of scRNA-seq data. For example, abundance of specific T cell subsets (e,g. CXCL13+ T and PDCD1+ T) has been found to correlate with shrinkage of CRC, and is more enriched in breast cancer responders compared to non-responders. Notably, the infiltration change metrics evaluated by RedeTIL have emerged as the most robust and accurate predictors. The spatial proximity of CD69+ T cells to cancer cells has been shown to correlate with shrinkage of CRC (Pearson R = 0.67, P = 0.02), and is also significantly enriched in Breast cancer responders than non-responders (P = 0.001), moreover, it has exhibited a high correlation with clinical objective response rate to Anti-PD-1/PD-L1 therapy across various cancer types (Pearson R = 0.8, P &lt; 0.001). Additionally, RedeTIL can be utilized to recommend mono- or combined drugs for individual patients.Our results proven that the application of scRNA-seq in predicting the response to immunotherapy in the clinical field is feasible, which can provide abundant and accurate information for treatment decisions, so as to achieve precision therapy.
DOI: 10.6084/m9.figshare.28072346.v1
title: Intensity_d1.mat

description: Intensity images for NAD(P)H and FAD.
DOI: 10.6084/m9.figshare.6450632.v2
title: Differentially expressed gene lists - Repeats

description: Files for 13 mutant lines, investigated for differentially expressed repeats, containing the repeat instances determined to be differentially expressed (using DESeq2).<br>see the README for more detail.<br>
DOI: 10.6084/m9.figshare.7110251.v1
title: The assembled genome of hog deer

description: The de novo assembled genome sequence of hog deer. This version is used for peer review only.
DOI: 10.17632/szky36kbpz
title: Data for: Quality online detection in cement clinker: A soft sensor model based on multivariate time series analysis and CNN

description: The raw data is in the cement plant, now.My collection is the papers we have seen.
DOI: 10.6084/m9.figshare.19682379.v2
title: Nitrogen input enhances microbial carbon use efficiency by altering plant-microbe-mineral interactions

description: Plant, geochemical and microbial properties in a multi-level field N addition experiment on the Tibetan Plateau.
DOI: 10.6084/m9.figshare.22147385.v1
title: Supplementary data 2 intersect monomorphic

description: List of monomorphic sites from exome capture and their corresponding positions in Pinus taeda genome and Pinus sylvestris transcriptome
DOI: 10.17632/2gm8y45g44
title: Prediction results of fatigue life

description: These tables give the fatigue life predition for all material in the paper. These data is computed by the Equations(13)-(14) in the paper.