cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7zz2t6
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Cis fissicornis Mellié, 1848",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 73 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103843-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgkueu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Tenuiphantes retezaticus (Růžička, 1985)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103845-240626123714530/datasets/export for details.
DOI: 10.15468/dl.dwwesk
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((30.44382 25.30296,30.75127 25.30296,30.75127 25.59995,30.44382 25.59995,30.44382 25.30296))",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103844-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qv5xny
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((30.44382 25.30296,30.75127 25.30296,30.75127 25.59995,30.44382 25.59995,30.44382 25.30296))",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103846-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tss8gw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Caulotrupis parvus Israelson, 1985)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103848-240626123714530/datasets/export for details.
DOI: 10.15468/dl.nhwcvh
title: Occurrence Download

description: A dataset containing 59769 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Mustela erminea Linnaeus, 1758",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 59769 records from 478 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103835-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hbnrj
title: Occurrence Download

description: A dataset containing 59769 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Mustela erminea Linnaeus, 1758",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 59769 records from 478 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103839-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r3tv3q
title: Occurrence Download

description: A dataset containing 552 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syzygium cumini (L.) Skeels",
 "Country is Brazil",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 552 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103849-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7cz6b3
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "TaxonKey is Evechinus chloroticus (Valenciennes, 1846)",
 "Year 1970-1979"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021626-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.14306394.v1
title: Postural changes, nursing behavior, and production performance of two breeds of sows in enriched environment

description: ABSTRACT This study was performed to compare changes in posture, nursing behavior, and production performance of two breeds of sows. The posture, postural changes, nursing behavior, and production performance of hybrid Damin (Large White × Min pig, n = 32) and Landrace × Large White (n = 32) sows were observed by video recording for 72 h after farrowing and from 07:00 to 09:00 h and 13:00 to 15:00 h within any successive two-day period of each week from the two to five weeks postpartum. The production performances were compared between the two breeds. Except standing at days 1 to 3 postpartum and sitting at day 2 postpartum, there were significant differences in postures between the two breeds of sows. The frequency of ventral-to-lateral recumbency at day 1 and weeks 4 and 5 postpartum and sitting-to-lying at days 1 and 3 and weeks 4 and 5 postpartum was significantly lower for the Damin than for Landrace × Large White sows. The frequency of standing-to-lying in the first 72 h postpartum was significantly higher for the Damin than for Landrace × Large White sows. At days 2 and 3 postpartum, piglet loss was significantly lower for the Damin than for Landrace × Large White sows. The duration of parturition and farrowing interval were significantly longer for the Landrace × Large White than for Damin sows. The number of live piglets was higher for the Damin than for Landrace × Large White sows. The birth weight of litters and weaning weight of piglets were lower for Damin than for Landrace × Large White piglets. These data suggest that the Damin sows showed stronger maternal instincts through their behaviors and postural changes compared with the Landrace × Large White sows.
DOI: 10.6084/m9.figshare.21117932
title: Additional file 8 of Genome-wide characterization of the MBF1 gene family and its expression pattern in different tissues and stresses in Zanthoxylum armatum

description: Additional file 8: Supplementary material 8. Table S7. The number of functional element regions detected in MBF1 promoter of various speices.
DOI: 10.6084/m9.figshare.14306394
title: Postural changes, nursing behavior, and production performance of two breeds of sows in enriched environment

description: ABSTRACT This study was performed to compare changes in posture, nursing behavior, and production performance of two breeds of sows. The posture, postural changes, nursing behavior, and production performance of hybrid Damin (Large White × Min pig, n = 32) and Landrace × Large White (n = 32) sows were observed by video recording for 72 h after farrowing and from 07:00 to 09:00 h and 13:00 to 15:00 h within any successive two-day period of each week from the two to five weeks postpartum. The production performances were compared between the two breeds. Except standing at days 1 to 3 postpartum and sitting at day 2 postpartum, there were significant differences in postures between the two breeds of sows. The frequency of ventral-to-lateral recumbency at day 1 and weeks 4 and 5 postpartum and sitting-to-lying at days 1 and 3 and weeks 4 and 5 postpartum was significantly lower for the Damin than for Landrace × Large White sows. The frequency of standing-to-lying in the first 72 h postpartum was significantly higher for the Damin than for Landrace × Large White sows. At days 2 and 3 postpartum, piglet loss was significantly lower for the Damin than for Landrace × Large White sows. The duration of parturition and farrowing interval were significantly longer for the Landrace × Large White than for Damin sows. The number of live piglets was higher for the Damin than for Landrace × Large White sows. The birth weight of litters and weaning weight of piglets were lower for Damin than for Landrace × Large White piglets. These data suggest that the Damin sows showed stronger maternal instincts through their behaviors and postural changes compared with the Landrace × Large White sows.
DOI: 10.6084/m9.figshare.20070784.v1
title: Additional file 1 of Gut microbiota signatures of long-term and short-term plant-based dietary pattern and cardiometabolic health: a prospective cohort study

description: Additional file 1: Table S1. Examples of food items constituting the 15 food groups in the CHNS. Table S2. The range of each food group by quintiles. Table S3. Associations of short-term intake of plant-based foods and animal-based foods estimated using 3-day 24-hour dietary recalls in 2015 with bacterial richness and diversity. Table S4. Associations of long-term intake of plant-based foods and animal-based foods estimated using repeat food frequency questionnaires in 2011 and 2015 with bacterial richness and diversity. Table S5. Associations of plant-based diet indices with bacterial richness and diversity with further adjustment for prevalent hypertension, type 2 diabetes, and related medicine use. Table S6. Associations of intake of plant-based foods and animal-based foods with bacterial richness and diversity with further adjustment for prevalent hypertension, type 2 diabetes, and related medicine use. Table S7. Associations of short-term plant-based diet indices estimated using 3-day 24-hour dietary recalls in 2015 with bacterial genera. Table S8. Associations of long-term plant-based diet indices estimated using repeat food frequency questionnaires in 2011 and 2015 with bacterial genera. Table S9. Associations of short-term intake of plant-based foods and animal-based foods estimated using 3-day 24-hour dietary recalls in 2015 with bacterial genera. Table S10. Associations of long-term intake of plant-based foods and animal-based foods estimated using repeat food frequency questionnaires in 2011 and 2015 with bacterial genera. Table S11. Associations of short-term plant-based diet indices estimated using 3-day 24-hour dietary recalls in 2015 with bacterial pathways. Table S12. Associations of long-term plant-based diet indices estimated using repeat food frequency questionnaires in 2011 and 2015 with bacterial pathways. Table S13. Associations of short-term intake of plant-based foods and animal-based foods estimated using 3-day 24-hour dietary recalls in 2015 with bacterial pathways. Table S14. Associations of long-term intake of plant-based foods and animal-based foods estimated using repeat food frequency questionnaires in 2011 and 2015 with bacterial pathways. Table S15. Prospective associations of microbial alpha-diversity with the future cardiometabolic risk factors.
DOI: 10.6084/m9.figshare.20073585.v1
title: Learning Topic Models: Identifiability and Finite-Sample Analysis

description: Topic models provide a useful text-mining tool for learning, extracting, and discovering latent structures in large text corpora. Although a plethora of methods have been proposed for topic modeling, lacking in the literature is a formal theoretical investigation of the statistical identifiability and accuracy of latent topic estimation. In this article, we propose a maximum likelihood estimator (MLE) of latent topics based on a specific integrated likelihood that is naturally connected to the concept, in computational geometry, of <i>volume minimization</i>. Our theory introduces a new set of geometric conditions for topic model identifiability, conditions that are weaker than conventional separability conditions, which typically rely on the existence of pure topic documents or of anchor words. Weaker conditions allow a wider and thus potentially more fruitful investigation. We conduct finite-sample error analysis for the proposed estimator and discuss connections between our results and those of previous investigations. We conclude with empirical studies employing both simulated and real datasets. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.21117929.v1
title: Additional file 7 of Genome-wide characterization of the MBF1 gene family and its expression pattern in different tissues and stresses in Zanthoxylum armatum

description: Additional file 7: Supplementary material 7. Table S6. The detailed information of cis-elements detected in the MBF1 family of various species.
DOI: 10.5281/zenodo.10650402
title: Sistema de partidos valenciano-histórico
DOI: 10.5281/zenodo.10650403
title: Sistema de partidos valenciano-histórico
DOI: 10.6084/m9.figshare.20073585
title: Learning Topic Models: Identifiability and Finite-Sample Analysis

description: Topic models provide a useful text-mining tool for learning, extracting, and discovering latent structures in large text corpora. Although a plethora of methods have been proposed for topic modeling, lacking in the literature is a formal theoretical investigation of the statistical identifiability and accuracy of latent topic estimation. In this article, we propose a maximum likelihood estimator (MLE) of latent topics based on a specific integrated likelihood that is naturally connected to the concept, in computational geometry, of <i>volume minimization</i>. Our theory introduces a new set of geometric conditions for topic model identifiability, conditions that are weaker than conventional separability conditions, which typically rely on the existence of pure topic documents or of anchor words. Weaker conditions allow a wider and thus potentially more fruitful investigation. We conduct finite-sample error analysis for the proposed estimator and discuss connections between our results and those of previous investigations. We conclude with empirical studies employing both simulated and real datasets. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.23740544
title: Additional file 6 of Identification and characterization of circRNAs in peri-implantation endometrium between Yorkshire and Erhualian pigs

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.14306432
title: Identification of candidate genes associated with milk yield trait in buffaloes ( Bubalus bubalis ) by restriction-site-associated DNA sequencing

description: ABSTRACT The objectives of our present study included the screening of single nucleotide polymorphisms (SNP) that show significant differences in allelic frequencies between two buffalo populations (Egyptian and Chinese buffaloes), categorization of functional genes associated with these SNP by gene ontology, and pathway analyses to further understand their potential values as candidate genes closely associated with milk yield trait in buffaloes. In this study, double digest restriction-site associated DNA sequencing was performed on Illumina HiSeq 2500 platform for 20 and 25 female buffaloes from Egypt and China, respectively. Approximately 118 Gb of sequencing data were obtained, and a total of 110,129 and 150,535 putative SNP were detected in Egyptian and Chinese buffaloes, respectively. Focused only on those SNP that differed significantly in allelic frequencies between the two populations, we found that genes associated with these SNP were significantly over-represented in the ionotropic glutamate receptor pathway, the endothelin signaling pathway, and the gonadotropin-releasing hormone receptor pathway, which contained a total of 29 genes. Of these, nine genes ( ADCY5, CACNA1A, CREB1, INHBA , INHBB, PIK3R1, PLCB1, PRKCE , and SMAD2 ) participating in the hormonal regulation of lactation, were considered to be promising candidate genes worthy of further investigations for favorable alleles associated with milk yield. Our results provide useful information about genetic variations in Egyptian and Chinese buffaloes. The potential influences of nine candidate genes and their associated SNP on milk yield need to be validated in more buffalo populations.
DOI: 10.6084/m9.figshare.14306432.v1
title: Identification of candidate genes associated with milk yield trait in buffaloes ( Bubalus bubalis ) by restriction-site-associated DNA sequencing

description: ABSTRACT The objectives of our present study included the screening of single nucleotide polymorphisms (SNP) that show significant differences in allelic frequencies between two buffalo populations (Egyptian and Chinese buffaloes), categorization of functional genes associated with these SNP by gene ontology, and pathway analyses to further understand their potential values as candidate genes closely associated with milk yield trait in buffaloes. In this study, double digest restriction-site associated DNA sequencing was performed on Illumina HiSeq 2500 platform for 20 and 25 female buffaloes from Egypt and China, respectively. Approximately 118 Gb of sequencing data were obtained, and a total of 110,129 and 150,535 putative SNP were detected in Egyptian and Chinese buffaloes, respectively. Focused only on those SNP that differed significantly in allelic frequencies between the two populations, we found that genes associated with these SNP were significantly over-represented in the ionotropic glutamate receptor pathway, the endothelin signaling pathway, and the gonadotropin-releasing hormone receptor pathway, which contained a total of 29 genes. Of these, nine genes ( ADCY5, CACNA1A, CREB1, INHBA , INHBB, PIK3R1, PLCB1, PRKCE , and SMAD2 ) participating in the hormonal regulation of lactation, were considered to be promising candidate genes worthy of further investigations for favorable alleles associated with milk yield. Our results provide useful information about genetic variations in Egyptian and Chinese buffaloes. The potential influences of nine candidate genes and their associated SNP on milk yield need to be validated in more buffalo populations.
DOI: 10.6084/m9.figshare.14306471.v1
title: Lactobacillus acidophilus reduces Listeria monocytogenes infection by inhibiting mitogen-activated protein kinase genes in growing rabbits

description: ABSTRACT We aimed to investigate the effect of Lactobacillus acidophilus ACCC11073 on the growth performance, oxidation, inflammation, and mitogen-activated protein kinase (MAPK) family genes of rabbits infected with Listeria monocytogenes (L. monocytogenes) using antibiotic enrofloxacin hydrochloride (EH) as a reference. There were four treatments including negative control, positive control with L. monocytogenes infection on the first day of feeding trial (PC), PC + EH at 40 mg kg−1, and PC + L. acidophilus at 108 CFU kg−1 of diet using 240 weaned growing rabbits. The results showed that L. monocytogenes infection worsened growth performance of rabbits, whereas EH or L. acidophilus supplementation partially recovered body weight gain, but did not reach the levels of the negative control. Listeria acidophilus and EH decreased L. monocytogenes loads in caecum, liver, spleen, and lymph node, serum oxidative markers including diamine oxidase, malondialdehyde, and protein carbonyl, serum IL-1β, IL-6, and TNF-α. The decreased effects of EH on IL-1β and TNF-α were more pronounced than that of the probiotic. Treatments EH and probiotic also de-regulated the mRNA levels of MAPK1, 3, 6, and 14. Listeria acidophilus exhibits a similar effect to EH against L. monocytogenes in rabbits, and the regulation on inflammatory process is via MAPK family genes. The results suggest that L. acidophilus can be used as a feed additive against L. monocytogenes infection.
DOI: 10.6084/m9.figshare.23740529.v1
title: Additional file 2 of Identification and characterization of circRNAs in peri-implantation endometrium between Yorkshire and Erhualian pigs

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.23740529
title: Additional file 2 of Identification and characterization of circRNAs in peri-implantation endometrium between Yorkshire and Erhualian pigs

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.14302755.v1
title: Additional file 6 of Opportunistic bacteria with reduced genomes are effective competitors for organic nitrogen compounds in coastal dinoflagellate blooms

description: Additional file 5: Table S4. Genomic information and encoded DON transporters on isolates and reference strains.
DOI: 10.6084/m9.figshare.14306465
title: Effect of fermented soybean meal supplementation on some growth performance, blood chemical parameters, and fecal microflora of finishing pigs

description: ABSTRACT This study evaluated the effect of fermented soybean meal (FSBM) supplementation on growth performance, meat quality, blood biochemical parameters, and fecal microflora of finishing pigs. Thirty-two crossbred pigs (Duroc × Landrance × Yorkshire) (66-day-old, 67.95±0.25 kg) were randomly allocated to two treatments and fed diets containing soybean meal and FSBM. The average daily gain (ADG), average daily feed intake (ADFI), feed conversion ratio (FCR), blood biochemical parameters, and meat quality index were measured. At the end of experiment, the fecal microflora of finishing pigs was analyzed with 16S rDNA techniques. Results revealed that pigs fed FSBM had a greater ADG and lower cooking loss relative to control group (basal diets). Compared with the control group, the triglyceride content in the serum of the group fed FSBM increased significantly, and the creatinine content in the serum decreased notably. Fermented soybean meal enhanced the abundance of Bacteroidetes, Prevotellaceae, Bcteroidales, Bacteroidia, but inhibited the growth of Firmicutes, Clostridia, Clostridiales, and Ruminococcaceae in the intestine of pigs. Therefore, we can speculate that FSBM may play an important role in animal production. Dietary FSBM supplementation may be beneficial to some aspects of growth performance and the diversity of fecal microflora in finishing pigs.
DOI: 10.6084/m9.figshare.20070829
title: Additional file 14 of Genome-wide identification of R2R3-MYB gene family and association with anthocyanin biosynthesis in Brassica species

description: Additional file 14: Supplementary Table S9. Comparison of the identification results of Arabidopsis R2R3-MYB genes.