cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/tkv8shghsj.2
title: Coding file for VR systematic review

description: The coding file used for conducting the VR systematic review
DOI: 10.17632/gmsvxm2wmw.1
title: Small Punch Test and Microindentation Raw Data

description: All raw Small Punch Test and Spherical Microindentation data used in the report titled "Critical Comparison of Spherical Microindentation, Small Punch Test, and Uniaxial Tensile Testing for Selective Laser Melted Inconel 718" is contained here. The raw data encompasses the load-displacement machine feedback data for all test performed for the study.
DOI: 10.17632/5348dspthz.1
title: A new genome protective function for DNA polymerase ζ

description: Full immunoblots for the figures in the manuscript "A new genome protective function for DNA polymerase ζ" by Sara K. Martin, Junya Tomida, and Richard D. Wood
DOI: 10.17632/bfkvybtpj6.2
title: Sandwich Analytics Part II: Transaction and Weather Data for 10 Quickserve Sandwich Locations Over a One Year Period

description: Transactional data collected from a quickserve sandwich chain over a one year period provides an opportunity to study market and food cost factors impacting sales and sales forecasting. The dates of the data ranges from April 2012 to March 2013. The receipts table contains over 575,000 rows which represent an individual menu item in one store for one receipt during each day of the one- year period. Recipe data was collected to attribute food cost to menu items for each of the 10 stores. Secondary data regarding hourly weather patterns were collected from NOAA Climatic Data Center. The hourly weather data can be used in conjunction with Sandwich Analytics Part I (https://data.mendeley.com/datasets/6htjnfs78b/1) which houses additional data including: County Crime, Employment, Census data, Sales and Rent.
DOI: 10.17632/rjmtmkvy6k.1
title: Coffee leaf litter decomposition: Short term home-field advantage in shaded coffee agro-ecosystems

description: Three data files are associated with the manuscript "Coffee leaf litter decomposition: short term home-field advantage in shaded coffee agro-ecosystems" in Applied Soil Ecology. Two describe the tethered line experiment; "TLdata1.csv" is the data from the tethered line experiment and "LECOalldataclean.csv" is the carbon to nitrogen ratio data for the tethered line experiment. The third data file, "AR_F19_nc.csv" includes the data from the litterbag portion of the experiment. All methods are described in detail in the Applied Soil Ecology publication.
DOI: 10.17632/cjbyw4bh6h.1
title: DR written test and confidence scores (pre-, post- and retention)

description: Pre-, post- and retention scores for each provider (written test, simulation and confidence scores)
DOI: 10.17632/wwkpzj3vfk.2
title: Inks composed of gelatine-alginate-hyaluronic acid for 3D printed scaffolds: effect of bioglass 45S5 addition on printability, rheology and mechanical properties

description: In this work, we studied the printability, mechanical and rheological properties of gelatin-alginate-hyaluronic acid inks with different concentrations of a bioactive glass, 45S5 bioglass (BG), from 2 to 8 % w/w respect to polymer powders. Inks depicted a pseudoplastic behavior with thermo-responsive gelation point of gelatin at 25°C (see processed rheometer data in "Rheology data" folder, please use SciDAVis software for .sciprj files), leading to self-supported structures during 3D printing. Addition of BG reduced storage modulus of the inks, evidencing more viscous behavior probably caused by the microparticles that disrupt the polymeric network. Higher concentrations of BG (above 6 %) led to a reduction of inks viscosity (see "Rheology data" &gt; "Inks Viscosity.xlsx"). Inks without BG evidenced good printing fidelity (Pr=0.91±0.06, evaluated using the "Ractangle Grid 10% infill for printability.gcode") slightly decreasing with up to 2 % BG concentration (see "Printability assay" files). Mechanical characterization of crosslinked scaffolds with CaCl2, evidenced tensile modules of ~0.13 MPa, similar to skin tissue, and increased to ~0.16 MPa after addition of 6-8% BG (see "Tensile moduculus assay" file, please use SciDAVis software). Fibroblast cells (NIH/3T3) attached and grew on the surface of the scaffolds (3D printed using "Cube 2cm 3mm.gcode"), revealing cytocompatibility of final products for all the scaffolds (see "Cell attachment assay" files). Moreover, scaffolds containing BG 6% and 8% w/w presented a hydroxyapatite layer (see EDS assay.xlsx).
DOI: 10.17632/d5y3y9zhzn.1
title: Altered activation and transcriptional profile in monocytes and CD8+ T cells in checkpoint inhibitor-related hepatitis

description: Abstract Background & Aims: Checkpoint inhibitor-related hepatitis (CPI-Hep) is an emerging clinical challenge. We aim to gain insights into the immunopathology of CPI-Hep by comprehensive characterisation of myeloid and lymphoid subsets. Methods: CPI-treated patients with or without related hepatitis (CPI-Hep; n=22 and CPI-noHep; n=7) were recruited. Phenotypic and transcriptional-profiling of peripheral immune subsets was performed and compared with 19 healthy controls (HC). In vitro monocyte-derived macrophages (MoMF) were assessed for activation and cytokine production. CCR2, CD68, CD3, CD8 and granzyme B expression was assessed using immunohistochemistry (n=4). Results: A significant total monocyte depletion was observed in CPI-Hep compared with HC (p=0.04), along with a proportionate increase in the classical monocyte population (p=0.0002) and significant upregulation of CCR2, CD163 and downregulation of CCR7. Soluble CD163 levels were significantly elevated in CPI-Hep compared with HC (p&lt;0.0001). In vitro MoMF from CPI-Hep showed enhanced production of pro-inflammatory cytokines. CD8+ T cells demonstrated increased perforin, granzyme B, ICOS and HLA-DR expression in CPI-Hep. Transcriptional profiling supported activated monocyte and enhanced effector CD8+ T cell populations in CPI-Hep. Immunohistochemistry demonstrated co-localisation of CD8+/granzyme B+ T cells with CD68+/CCR2+ macrophages in CPI-Hep liver tissue. Conclusions: CPI-Hep is associated with an activation of peripheral monocytes and enhanced cytotoxic, effector phenotype of CD8+ T cells. These changes were reflected by liver inflammation composed of CCR2+ macrophage and CD8+ T cells.
DOI: 10.17632/snmz587nvb.1
title: Acceleration time history data for experimental shear building model (Kumar Anjneya & Koushik Roy)

description: The dataset contains dynamic floor responses from a six-storey three-dimensional miniature model (scale 1:20) of shear building. The experimental setup is located at Structural health monitoring lab, Block VI, Department of Civil and Environmental engineering, Indian Institute of technology (IIT), Patna, Bihar, India. The experiment was conducted by Kumar Anjneya, currently a research Scholar at Indian Institute of technology (IIT), Kharagpur, India.
DOI: 10.17632/mxwpkdx9jf.2
title: "Multi-organ Proteomic Landscape of COVID-19 Autopsies" A study of Nie et al

description: The molecular pathology of multi-organ injuries in COVID-19 patients remains unclear, preventing effective therapeutics development. Here, we report an in-depth multi-organ proteomic landscape of COVID-19 autopsy samples. By integrative analysis of seven-organ proteomes, namely lung, spleen, liver, heart, kidney, thyroid and testis, we quantified 11,394 proteins, in which 5336 were perturbed in theCOVID-19 patients compared to controls. Our data showed that CTSL, rather than ACE2, was significantly upregulated in the lung from the COVID-19 patients. Dysregulation of protein translation, glucose metabolism, fatty acid metabolism was detected in multiple organs. Our data suggested upon SARS-CoV-2 infection, hyperinflammation might be triggered, leading to hypoxia, angiogenesis, blood coagulation and fibrosis in the multiple organs. Evidence for testicular injuries includes reduced Leydig cells, suppressed cholesterol biosynthesis and sperm mobility. In summary, this study depicts the multi-organ proteomic landscape of COVID-19 autopsies, and uncovered dysregulated proteins and biological processes, offering potential therapeutic clues.
DOI: 10.17632/x4snnx75r9.1
title: LINF_050008600

description: RNA helicase | DBP8; Leishmania infantum
DOI: 10.17632/f8ybp3kpcc.1
title: LINF_050007900

description: phosphate carrier protein - mitochondrial | MCP8; Leishmania infantum
DOI: 10.17632/jwyy9np4gv.1
title: A dataset of lung sounds recorded from the chest wall using an electronic stethoscope
DOI: 10.17632/gv2xbm9mwj.1
title: LINF_050007500

description: Ankyrin repeat-containing protein; Leishmania infantum
DOI: 10.17632/tnmcp3hcrg.1
title: Emotional/Behavioral and Adaptive Functioning Among Children who are Deaf and Hard of Hearing: The Impact of Home and School Communication Modality Combinations

description: data set for paper
DOI: 10.17632/2x5yyrwnwx.1
title: Failure to degrade CAT-tailed proteins disrupts neuronal morphogenesis and cell survival. Udagawa et al
DOI: 10.17632/7v2swwwfth.1
title: Biologic Treatment Outcomes in Mucous Membrane Pemphigoid: A Systematic Review

description: JAAD - Supplementary Files and Table for "Biologic Treatment Outcomes in Mucous Membrane Pemphigoid: A Systematic Review"
DOI: 10.17632/ytst4kss9p.4
title: Fidgety Philip and the Suggested Clinical Immobilization Test: Annotation Dataset & HMovements Automated Movement Detection Algorithm

description: ANNOTATION DATASET To facilitate ‘structured behavioral observations’ in clinical practice, we are interested in analyzing movement patterns, mainly voluntary and involuntary motions, during sitting. We developed a clinical protocol for analyzing characteristics of voluntary movements during sitting with the goal to capture disorder specific movement patterns and contribute to the phenotypic characterization of H-behaviors. To enhance our understanding, we conducted this phenotyping exercise independent of discipline-related boundaries and applied a pictogram guided-phenotyping language (PG-PL). Phase 1, Step 1: Annotation/analysis concept naïve research assistants (RAs) were trained. They then annotated three original Fidgety Philip cartoons and were instructed to ‘describe, but not interpret’. The dataset contains RAs' annotations of the cartoons. Phase 1, Step 2: RAs then annotated snapshots from suggested clinical immobilization tests (SCIT) to work out the distinction between ‘interpretive’ and ‘neutral, non-interpretive’ PG-PL descriptions in the analysis of snapshots from the SCIT with free-hand and then PG-PL annotations. The dataset contains RAs' free-hand and pictogram annotations of 12 SCIT snapshots. Phase 2: The goal of this phase was to apply the PG-PL to SCIT videos and to develop the first machine learning algorithm for automated movement detection. The dataset contains RAs' pictogram annotations of 1-minute long SCIT video clips. The data are available in raw and processed formats.​ HMOVEMENTS: AUTOMATED MOVEMENT DETECTION ALGORITHM The automated movement detection algorithm also is called "HMovements." This algorithm is available for download within this dataset. See the User Guide for instructions on using the algorithm. Note that the algorithm cannot be used on a Mac.
DOI: 10.17632/5468zb93fx.1
title: Dataset for: On the SIF of cracks emanating from circular and elliptical holes in ortotropic bodies

description: Parameters for fitting function
DOI: 10.25919/hpgv-5470
title: Parkes observations for project P456 semester 2020OCTS_01

description: The Parkes Pulsar Timing Array (PPTA) project has three primary goals: (a) detection of gravitational waves from astronomical sources, (b) establishment of a pulsar timescale, and (c) improvement of our understanding of Solar-system dynamics. The PPTA is the oldest of three international pulsar timing groups. We have the smallest telescope and the smallest group, but the best measurements and the best results. Our bound on the strength of the incoherent gravitational wave background is the only bound which significantly constrains theoretical models. We have maintained our leading position because: we have the southern sky; we have a small but well-focussed group; we have the best-calibrated receivers; and we have been able to observe with an almost regular cadence of 15 to 20 days over a wide bandwidth. With this proposal we aim to maintain our pre-eminent position in the field. Unlike most observing proposals, this is a continuing proposal for which the observations will continue to improve bounds on ultra-low-frequency gravitational waves until they are finally detected. Continued Parkes observations will remain valuable at least until the first stage of the SKA is able to improve on our sensitivity and observing cadence. Even after the gravitational wave background is detected we will want to continue observations in support of the nascent field of gravitational wave astronomy!
DOI: 10.17632/y69wn559ym.1
title: Proteomics raw data of mammary tumor cells from female dogs

description: This data is part of the material used to study the effect of rapamycin on mammary tumor cells of female dogs. We would like to evaluate the dose response of mammary tumor cells from dogs and evaluate the proteins comparing before and after treatment with rapamycin. We used samples of tumors from mammary gland and their respective metastases from 2 animals. Four samples were cultured in vitro and treated with rapamycin in different doses (IC50) for each cell line. The cells were prepared to proteomics (ESI Q-TOF MS/MS). We used for statistical analysis comparisons between control versus rapamycin treatment groups, and also metastasis versus primary tumor versus metastasis rapamycin versus primary tumor rapamycin. The experiment was performed in biological duplicates and in technical duplicates.
DOI: 10.17632/5nd4bv3dpk.1
title: YouTube Videos As a Source of Information on the COVID-19 Intubation

description: This data shows 37 YouTube videos meeting the inclusion criteria. Used the term ''COVID-19 intubation on 9 May 2020.
DOI: 10.6084/m9.figshare.13466570.v2
title: Data & Figures(Paper title : Collapse of a coastal revetment by the combined effect of anthropogenic and natural disturbances)

description: Observation data used for creating figures in the paper 'Collapse of a coastal revetment by the combined effect of anthropogenic and natural disturbances' and Figures(10)
DOI: 10.17632/9y8zn8dvyp.1
title: Replication files for GVCs and the Endogenous Geography of RTAs

description: We compare the observed RTAs to the probability threshold optimizing the joint prediction of signed and unsigned agreements, and derive a counterfactual RTA geography by signing predicted but unsigned agreements. To assess the trade and welfare consequences of signing unsigned agreements in General Equilibrium, we follow Anderson, Larch & Yotov (2018) and use a General Equilibrium Poisson Pseudo Maximum Likelihood (GEPPML) method to solve the system of equations associated with the model. We proceed by estimating a probability model using data over the 1990-2014 period; the fiveyear lag for covariates implies that we will consider agreements that were signed between country pairs over the 1995-2014 period, adding to the usual controls for the indirect involvement of the country pair in the fragmentation of value chains. We evaluate model goodness-of-fit by considering the probability cut-off that provides the best percentage of correctly-predicted events (a countrypair being, or not, members at a given date of an RTA: RTA=1 and RTA=0).: the optimal cut-off probability maximizes the percentages of true positives and true negatives. We focus on the mis-classified RTAs that are classified as FP from the probabilistic model are be used in a structural gravity system to evaluate the welfare changes associated with alternative sets of trade agreements
DOI: 10.17632/syb8c5sfwn.1
title: Relengthening of UV

description: The raw dataset of relengthened ulnar variance after ulnar shortening osteotomy
DOI: 10.17632/yn4wgvyrtg.1
title: Data for "An experimental exploration of the properties of random frequency response functions"
DOI: 10.5281/zenodo.4387083
title: data

description: beach aeolian sand
DOI: 10.5281/zenodo.4387082
title: data

description: beach aeolian sand
DOI: 10.17632/dybf8m3m5g.2
title: Differential target enhancement, not reactive inhibition determines levels of guidability in Multiple Object Tracking

description: Flexible resource models suggest that attentional deployment in Multiple Object Tracking (MOT) either shows in target enhancement or distractor inhibition or both. In order to gauge the influence of these processes we manipulated distinctiveness of targets and distractors along a single dimension by finely grading gray values of objects. We established that a quantitative increase in distinctiveness results in a quantitative increase in tracking performance thus demonstrating a new finding. Further increases of distinctiveness beyond a certain degree produced no further improvements in tracking. This effect, however, was moderated by levels of load thus providing evidence for the relativity of this effect. With higher task loads higher degrees of distinctiveness still resulted in a significant performance gain (Experiment 1). A follow up experiment generalized this finding. By manipulating speed of objects, a yet higher load situation could be established showing that an increase of an already striking distinctiveness can produce an even further performance gain - provided that task load is very high (Experiment 2). Finally we tested the hypothesis that target enhancement and distractor inhibition are influenced by feature distinctiveness. Although we found possible indications for distractor inhibition, we could not demonstrate an effect of feature distinctiveness on distractor inhibition. Target enhancement, however, was substantially influenced by variation of feature distinctiveness (Experiment 3).
DOI: 10.17632/9x2hvryd67.1
title: Transcriptome analysis reveals the potential mechanisms of growth arrest and survival of large to giant congenital melanocytic nevus: senescence-like cell cycle arrest and immune evasion

description: Mendeley supplemental figure 1. Differently expressed genes in large to giant melanocytic nevus. The red dots represent the up-regulated genes, and the green dots represent the down-regulated genes. The grey dots are genes without significant difference in expression.
DOI: 10.17632/sstxdjj32h.1
title: Elevator accidents France

description: Elevator Accidents in France
DOI: 10.17632/knx84z3463.1
title: Semantic Migration of Fonds Examples

description: A CIDOC-CRM Ontology Representation of the Portuguese Archival Description Units, namely "Paróquia de Aldoar" (http://pesquisa.adporto.arquivos.pt/details?id=488455), a Fonds with Reference Code "PT/ADPRT/PRQ/PPRT01" and "Juízo da Índia e Mina" (http://digitarq.arquivos.pt/details?id=4208377), a Fonds with Reference Code "PT/TT/JIM". This dataset is part of the results obtained from the semantic migration process of DigitArq - Portuguese Archive Database - metadata into CIDOC-CRM Ontology representation. This work is done in the context of the R&D EPISA project (Entity and Property Inference for Semantic Archives), a research project financed by National Funds through the Portuguese funding agency, FCT (Fundação para a Ciência e a Tecnologia) - DSAIPA/DS/0023/2018.
DOI: 10.17632/sfhvwwvc5d.1
title: Clinical scores and corresponding outcome in 151 status epilepticus patients

description: Scores for STESS, EMSE-EAC and EMSE-EACE for 151 status epilepticus patients with the corresponding outcomes.
DOI: 10.17632/wx25yk73n7.1
title: VanLooveren et al. 20201222

description: Raw data contributing to the manuscript 'Improved Functionality and Potency of Next Generation BinMLV Viral Vectors towards Safer Gene Therapy'.
DOI: 10.17632/7gzv7hc7kg.1
title: Data_Goncalves2020

description: Raw data related to paper: Gonçalves et al. 2020
DOI: 10.6084/m9.figshare.13482324
title: Supplementary Material for: Vertigo and Balance Disorders – The Role of Osteopathic Manipulative Treatment: A Systematic Review

description: <b><i>Background:</i></b> Balance disorders are among the most frequent reasons for consultation and referral to specialist care. Osteopathic Manipulative Treatment (OMT) can influence the proprioceptive system by inducing alterations in the proprioceptive stimuli, hence affecting postural control. <b><i>Objective:</i></b> The present systematic review aimed to explore the effects of OMT in managing patients with vertigo and balance disorders. <b><i>Methods:</i></b> MEDLINE (PubMed), ScienceDirect, and Google Scholar were searched. Clinical trials and prospective observational studies were considered. Only studies that considered OMT as the main intervention, provided alone or combined with other interventions, were included. The methodological quality of the evidence was assessed with a modified version of the Newcastle-Ottawa Scale. <b><i>Results:</i></b> Five studies that enrolled a total of 114 subjects met our inclusion criteria. Overall, it has been observed that there is a positive effect on balance disorders through different outcomes in all of the included studies. Only two studies (9 subjects) mentioned low to moderate adverse events after OMT. <b><i>Conclusions:</i></b> OMT showed weak positive effects on balance function, encouraging the connection of conventional medicine and evidence-based complementary medicine for integrative clinical practice and interprofessional work. However, full-sized adequately powered randomized trials are required to determine the effectiveness of OMT for vertigo and balance disorders.
DOI: 10.6084/m9.figshare.13482324.v1
title: Supplementary Material for: Vertigo and Balance Disorders – The Role of Osteopathic Manipulative Treatment: A Systematic Review

description: <b><i>Background:</i></b> Balance disorders are among the most frequent reasons for consultation and referral to specialist care. Osteopathic Manipulative Treatment (OMT) can influence the proprioceptive system by inducing alterations in the proprioceptive stimuli, hence affecting postural control. <b><i>Objective:</i></b> The present systematic review aimed to explore the effects of OMT in managing patients with vertigo and balance disorders. <b><i>Methods:</i></b> MEDLINE (PubMed), ScienceDirect, and Google Scholar were searched. Clinical trials and prospective observational studies were considered. Only studies that considered OMT as the main intervention, provided alone or combined with other interventions, were included. The methodological quality of the evidence was assessed with a modified version of the Newcastle-Ottawa Scale. <b><i>Results:</i></b> Five studies that enrolled a total of 114 subjects met our inclusion criteria. Overall, it has been observed that there is a positive effect on balance disorders through different outcomes in all of the included studies. Only two studies (9 subjects) mentioned low to moderate adverse events after OMT. <b><i>Conclusions:</i></b> OMT showed weak positive effects on balance function, encouraging the connection of conventional medicine and evidence-based complementary medicine for integrative clinical practice and interprofessional work. However, full-sized adequately powered randomized trials are required to determine the effectiveness of OMT for vertigo and balance disorders.