cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24004110.v1
title: 1 - A. Pannard (2024) Ecological Monographs - listing of definitions.doc

description: In the present study, we sought to understand why there are so many definitions, how they differ, whether they include different concepts and whether some are more consensual.<br>Here are provided the listing of the 138 definitions found un the literature with its reference.
DOI: 10.6084/m9.figshare.25990843.v1
title: Reconstruction of ancestral state and historical biogeography of the Cyrenidae species

description: Input files and R code used for ancestral state and historical biogeography reconstruction.<br>
DOI: 10.60893/figshare.jcp.28603379.v1
title: Supplementary Material

description: Detailed principles of thermochemical data calculation.
DOI: 10.6084/m9.figshare.28741451.v1
title: Coupling of soil carbon and nitrogen during the anthropogenic transition from desert grassland to shrubland_Research Data

description: Shrub encroachment into grasslands is a global phenomenon with far - reaching implications for ecosystem carbon and nitrogen cycles. Yet, the impacts of anthropogenic shrub encroachment on soil carbon - nitrogen coupling remain largely unknown. Here, we examined a desert grassland - shrubland mosaic formed by nearly 40 years of anthropogenic shrub encroachment. We partitioned the mosaic into four transition sites and selected microhabitats for in - situ mineralization experiments. Our results indicated that transition sites and incubation time significantly influenced soil nitrogen and carbon parameters. As the ecosystem shifted from desert steppe to shrubland, there were notable decreases in inorganic nitrogen (-10.99%), organic carbon (-97.33%), and extracellular enzyme activity (-130.77%), with concomitant reductions in net nitrogen mineralization (-102.47%), organic carbon transformation (-157.14%), and net nitrification rates (-249.14%). Contrasting these patterns, soil respiration (+30.49%) and ammonium nitrogen (+8.93%) exhibited significant increases, while microbial biomass carbon remained statistically invariant across the vegetation shift. We also observed a shift from microbial mineralization to immobilization during the transition. Strong coupling was identified between carbon and nitrogen contents and transformation rates (p&lt;0.05). The net nitrification rate emerged as the key factor in carbon - nitrogen coupling due to the decoupling of ammonification and carbon transformation. Our work provides novel insights into the complex interplay of soil carbon and nitrogen under anthropogenic shrub encroachment.
DOI: 10.17632/3p9v2s6588
title: LINF_150020900

description: MGT1 | Magnesium transporter; Leishmania infantum (strain JPCM5)
DOI: 10.25403/upresearchdata.13308686.v1
title: The sustained success of female executives in elite law firms in South Africa

description: Research project data set for MBA requirement. Interviews and transcripts were employed as data collection methods. The information was obtained from female executives within elite law firms in South Africa. They contain information about their companies and specific practitioners which the researcher agreed to keep confidential and that is the basis on which ethical clearance was obtained. The research report anonymized all participants names. The data and information therein should therefore never be shared with third parties unless specific consent was acquired from the participants themselves. When the data was gathered participants were not advised not to share their names or organisational names. It would therefore be unethical to ever release the recordings publically. As it is possible that the release of this information would be detriment to the interests of the participants.
DOI: 10.6084/m9.figshare.12057759.v2
title: C9orf72 hexanucleotide repeat in Huntington-like patients: Systematic review and meta-analysis

description: The protocol was registered on the International Prospective Register of Systematic Reviews database (PROSPERO) (registration number: CRD42018105465). The search was carried out in Medline, Scopus, Web of Science, and Embase in April 2018. Observational studies reporting patients with HLD carrying the hexanucleotide repeat expansion in the <i>C9orf72</i> gene were selected and revised; this process was carried out in duplicate. The cutoff threshold for considering the hexanucleotide expansion as a pathogenic variant was equal or more than 30 G<sub>4</sub>C<sub>2</sub> repeats. The pooled frequency and 95% CI were calculated with random effect models.
DOI: 10.6084/m9.figshare.1597458.v1
title: Co-occurrence and Limiting Similarity Null Model Type I and Type II Error Rate Dataset

description: THIS DATASET ACCOMPANIES: Lavender, T.M., Schamp, B.S., and Lamb, E.G., The influence of matrix size on statistical properties of co-occurrence and limiting similarity null models. PLoS ONE, In Review. <strong>ABSTRACT</strong> Null models exploring species co-occurrence and trait-based limiting similarity are increasingly used to explore the influence of competition on community assembly; however, assessments of common models have not thoroughly explored the influence of variation in matrix size on error rates, in spite of the fact that studies have explored community matrices that vary considerably in size. To determine how smaller matrices, which are of greatest concern, perform statistically, we generated biologically realistic presence-absence matrices ranging in size from 3-50 species and sites, as well as associated trait matrices. We examined co-occurrence tests using the C-Score statistic and independent swap algorithm. For trait-based limiting similarity null models, we used the mean nearest neighbour trait distance (NN) and the standard deviation of nearest neighbour distances (SDNN) as test statistics, and considered two common randomization algorithms: abundance independent trait shuffling (AITS), and abundance weighted trait shuffling (AWTS). Matrices as small as three × three resulted in acceptable type I error rates (p &lt; 0.05) for both the co-occurrence and trait-based limiting similarity null models when, exclusive p-values were used. The commonly used inclusive p-value (≤ or ≥, as opposed to exclusive p-values; &lt; or &gt;) was associated with increased type I error rates, particularly for matrices with fewer than eight species. Type I error rates increased for limiting similarity tests using the AWTS randomization scheme when community matrices contained more than 35 sites; a similar randomization used in null models of phylogenetic dispersion has previously been viewed as robust. Notwithstanding other potential deficiencies related to the use of small matrices to represent communities, the application of both classes of null model should be restricted to matrices with 10 or more species to avoid the possibility of type II errors. Additionally, researchers should restrict the use of the AWTS randomization to matrices with fewer than 35 sites to avoid type I errors when testing for trait-based limiting similarity. The AITS randomization scheme performed better in terms of type I error rates, and therefore may be more appropriate when considering systems for which traits are not clustered by abundance. Please see the README.txt file and associated manuscript for details on the data contained in this repository.
DOI: 10.6084/m9.figshare.17062085.v1
title: Chronostratigraphic data from Mokomoko Inlet, southern New Zealand

description: Caesium, stable lead isotope and radiocarbon data from core MKT-18.5, taken from Mokomoko Inlet, southern New Zealand. Associated with manuscript Garrett et al., Drivers of 20th century sea-level change in southern New Zealand determined from proxy and instrumental records.
DOI: 10.6084/m9.figshare.26348452.v1
title: Supplementary Table S1-S6

description: <b>Supplementary Table S1-S6</b><b>Table S1. Primers associated with qRT-PCR validation of DEGs compared between</b><b><i> Mycoplasma bovis</i></b><b> NX114 VS PG45</b><b>Table S2. DEGs of </b><b><i>Mycoplasma bovis</i></b><b> NX114 vs PG45</b><b>Table S3. Database annotation of DEGs in</b><b><i> Mycoplasma bovis</i></b><b> NX114 vs PG45</b><b>Table S4. DEGs of</b><b><i> Mycoplasma bovis</i></b><b> NX114 vs PG45</b><b>Table S5. GO annotation of DEPs in </b><b><i>Mycoplasma bovis</i></b><b> NX114 vs PG45</b><b>Table S6. KEGG annotation of DEPs in</b><b><i> Mycoplasma bovis</i></b><b> NX114 vs PG45</b>
DOI: 10.6084/m9.figshare.6940268.v1
title: code example

description: An example Matlab code to compute the stable manifold of saddle periodic orbit using implicit equation-free reduction.
DOI: 10.6084/m9.figshare.848609.v2
title: Segmented high resolution t1 weighted image

description: This is a segmented version of the highres_brain.nii.gz file. It was segmented into grey matter, white matter and cerebrospinal fluid using FAST in FSL. http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FAST
DOI: 10.17632/jp8d4875nf
title: Supplementary data for manuscript: "Nutrigenomic marker discovery by de novo transcriptomic sequencing during early development of the tropical gar (Atractosteus tropicus)"

description: This dataset includes the transcriptome assembly, annotation, ORF prediction, expression levels and GOseq enrichment analyses of genes expressed during early development of the tropical gar (Atractosteus tropicus). See manuscript for more details
DOI: 10.6084/m9.figshare.1137162.v5
title: Articles with Ebola mentioned online anytime as tracked by Altmetric, with crowdsourced type of access and license
DOI: 10.6084/m9.figshare.14680033
title: SupplementaryMaterial.FileS1 for Mandibular morphology, task specialization, and bite mechanics in Pheidole ants (Hymenoptera: Formicidae)

description: Three-dimensional reconstructions of Pheidole hetschkoi and P. cf. lucretti workers mandibles used in the Finite Element Analysis simulations.
DOI: 10.6084/m9.figshare.1524139_d4
title: BENTHOZ-2015 public data set

description: BENTHOZ-2015 is a data set consisting expert annotations on Australian benthic images. It contains over 400,000 expert point annotations of 148 scientific classes according to the CATAMI hierarchy, along with geolocation, and other sensor data from the autonomous underwater vehicle (AUV) that captured it.
DOI: 10.6084/m9.figshare.25156508.v1
title: EEG.csv

description: The EEG.csv file contains electroencephalographic data collected by the Enophones.
DOI: 10.6084/m9.figshare.26348779.v1
title: <b>XeroGraph - Test dataset</b>

description: Dataset used to test XeroGraph. https://github.com/kazilab/XeroGraph
DOI: 10.6084/m9.figshare.26352121.v1
title: Evolutionary history and ecology of <i>Andrena </i>(<i>Foveoandrena</i>) <i>androfovea</i>, a new nearctic mining bee (Hymenoptera, Andrenidae) species and subgenus

description: GENERAL INFORMATIONThis repository contains supplementary files associated with the research articleEvolutionary history and ecology of <i>Andrena </i>(<i>Foveoandrena</i>) <i>androfovea</i>, a new nearctic mining bee (Hymenoptera, Andrenidae) species and subgenusby Silas Bossert, Keng-Lou James Hung, and John L. NeffFor questions on the data of this paper contact silas.bossert [at] wsu.eduThis repository consists of eight files.###<b>1. Foraging_footage_Andrena_androfovea.zip</b>This archive contains video and photo footage of the newly described <i>Andrena androfovea </i>foraging on pollen and nectar of <i>Chamaesaracha coniodes</i>, all taken on 12 April 2024 in the vicinity of the Washita National Wildlife Refuge, Oklahoma, by Keng-Lou James Hung.###<b>2. WGS_assemblies_Andrena_androfovea_nsp.zip</b>This archive contains whole genome sequence data of the newly described species <i>Andrena androfovea</i> in fasta format. The assembly files were generated with SPAdes. One file contains the sequence data from the Oklahoman representative of the species, the other sample was collected in Texas.###<b>3. UCE_Extracts_Andrena_androfovea_nsp.zip</b>This archive contains the UCEs that were extracted from the whole genome assemblies using the Hymenoptera V2 probe set. The files are in fasta format.###<b>4. Concatenated_sequence_matrix_and_partitions.zip</b>This archive contains the concatenated DNA sequence matrix used for phylogenetic estimates, as well as the partition file as inferred by CURE and IQ-Tree2.###<b>5. Individual_UCE_alignments_80p_matrix.zip</b>This archive contains 1,175 individual UCE alignments that were generated for the 80% completeness matrix. This data was used to carry out the phylogenetic estimates.###<b>6. COIs_Andrena_androfovea.fasta</b>This fasta file contains two sequences that were extracted from the whole genome data using the phyluce command 'phyluce_assembly_match_contigs_to_barcodes' and with the COI barcode of <i>Andrena milwaukeensis</i> as reference (sample ID BEECC462-08 from boldsystems.org).<b>7. Supplementary_Dated_Tree.nex</b>This nexus file contains the final dated phylogeny generated in the study in a tree format.<b>8. Supplementary_Dated_Tree.pdf</b>The final dated phylogeny printed as a Pdf file.
DOI: 10.6084/m9.figshare.27100996.v1
title: Data and code for Johansson et al. 2025 - Low cross-taxon congruence and weak stand-age effects on biodiversity in Swedish oak forests

description: Data and code for Johansson et al. 2025 - Low cross-taxon congruence and weak stand-age effects on biodiversity in Swedish oak forests
DOI: 10.6084/m9.figshare.28522058.v1
title: Supplementary Material for: Clinical outcomes of patients undergoing hemodialysis with cool versus standard dialysate: A systematic review and meta-analysis.

description: Rationale & Objective: Clinical practice guidelines recommend lower (35.0°C–35.5°C) instead of standard dialysate temperature (36.5°C–37.0°C) to mitigate the risk of intradialytic hypotension. However, many studies have been available since the recommendations were published. Hence, the current study aims to provide an updated meta-analysis of clinical outcomes with cold versus standard dialysate.
Study Design: Systematic review and meta-analysis of eligible articles indexed in PubMed, Cochrane, Web of Science, and Scopus.
Participants: Hemodialysis patients
Exposure: Cooled versus standard dialysate.
Outcome: Intradialytic hypotension, mean arterial pressure, thermal-related discomfort, and body temperature.
Analytical Approach: The random effects model was used for all outcomes due to high heterogeneity (I2: interdialytic hypotension=60%, mean arterial pressure=72%, symptoms of discomfort =41%, and decrease in body temperature=87%). The "leave-one-out" approach was used for sensitivity analysis, and the Cochrane risk-of-bias tool was used to evaluate study quality.
Results: Pooled data from 31 studies indicate that cooled dialysis may be associated with a lower risk of intradialytic hypotension [RR 0.67 (95%CI 0.48–0.93), p=0.02] and higher mean arterial pressure [MD 7.18 (95%CI 3.79–10.58), p&lt;0.01] compared to standard temperature dialysis. However, cooled dialysis was associated with a higher risk of discomfort [RR 1.55 (95% CI 1.25–1.93], p&lt;0.01] and a decrease in body temperature [MD -0.29 (95%CI -0.52–-0.05), p=0.02]. Only five studies had a low risk of bias.
Limitations: Most included studies were from over a decade ago, had a small participant size, and did not report other critical long-term outcomes such as mortality, cardiovascular events, treatment discontinuation, or hospitalization rate.
Registration: Registered with ID CRD42024589307 at PROSPERO
Conclusions: Using cooled dialysate might be a simple approach to reduce interdialytic hypotension risk and increase mean arterial pressure, albeit at the cost of patient discomfort. The limitations associated with the quality of included studies underscore the need for high–quality, multicenter studies with large/diverse study populations.
DOI: 10.6084/m9.figshare.28625090.v1
title: Qualitative Study on Technological Trends in Indonesia Finance Industry by AI and Industrial Practitioner

description: This study examines the role of artificial intelligence (AI) in analyzing key technological trends in Indonesia’s financial sector. Using a qualitative descriptive approach, AI tools—including ChatGPT, Gemini, Elicit, Jenni, and Perplexity—were utilized to assess ten emerging trends: Ubiquitous Computing, IoT, Datafication, AI, Extended Reality, Blockchain, 3D Printing, Gene Editing, Nanotechnology, and New Energy Solutions. Findings show AI, IoT, and Datafication are widely adopted, while Extended Reality and Blockchain face regulatory and security challenges. Financial institutions must enhance cybersecurity, regulations, and partnerships to ensure responsible AI integration. Future research should assess AI’s economic impact and governance frameworks. Keywords— artificial intelligence, technological trends, finance industry
DOI: 10.6084/m9.figshare.3103027.v3
title: Preservice teachers’ perceptions of heroes and teaching individual development and identity

description: This is a short paper presented at the International Society for the Social Studies Conference in Orlando, FL, February 2016.<br>We also included our initial research outline and the beginning of our first draft for the research report.
DOI: 10.6084/m9.figshare.3562896.v1
title: Appendix C. Illustration that distinguishes diffuse from non-additive selection.

description: Illustration that distinguishes diffuse from non-additive selection.
DOI: 10.17632/8zxc3kzwxj
title: Layer for regionalized LCA data (LCI) and characterization factors (LCIA)

description: The data contains a shapefile with IDs in "Regionalization shapefile.zip" and a respective KML layer (for Google Earth) in "regionalization_layer_v1.kmz". It is meant to be used to aggregate, store and share regionalized results from LCA and LCIA, as the layer covers the main features for impact assessment and policy level. It contains 50’626 units (48’612 terrestrial and 2'014 marine regions). The ID description and correspondance to the original layer are provided in "Description shapefile layer.xlsx", incl. some additional information from the original layers. The information related to countries is in yellow, ecoregions in green, urban in grey and watersheds in light blue. Coastal marine ecoregions are in marked dark blue and fisheries purple. Through the information in this layer, existing regionalized LCIA results such as recommended methods for land and water use can be directly linked. However, they can also be linked just based on ecoregions, watersheds, countries or urban areas using the original shapefiles used to compile this dataset through respective IDs. The following 6 layers have been used: - Urban areas: Natural Earth, Urban Areas, version 4.0.0, 11877 Urban areas Schneider, A., M. A. Friedl and D. Potere (2009) A new map of global urban extent from MODIS data. Environmental Research Letters, volume 4, article 044003. - Country boundaries (subunits) Natural Earth, Admin 0 – Details, version 4.1.0, 197 countries https://www.naturalearthdata.com/downloads/10m-cultural-vectors/10m-admin-0-details/ - Ecoregions Terrestrial Ecoregions of the World, WWF (2012), 867 terrestrial ecoregions Olson, D. M., Dinerstein, E., Wikramanayake, E. D., Burgess, N. D., Powell, G. V. N., Underwood, E. C., D'Amico, J. A., Itoua, I., Strand, H. E., Morrison, J. C., Loucks, C. J., Allnutt, T. F., Ricketts, T. H., Kura, Y., Lamoreux, J. F., Wettengel, W. W., Hedao, P., Kassem, K. R. 2001. Terrestrial ecoregions of the world: a new map of life on Earth. Bioscience 51(11):933-938. - Watersheds Aware method: Input data (WaterGAP), 11049 watersheds; http://www.wulca-waterlca.org/aware.html Müller Schmied, H., Eisner, S., Franz, D., Wattenbach, M., Portmann, F. T., Flörke, M., and Döll, P.: Sensitivity of simulated global-scale freshwater fluxes and storages to input data, hydrological model structure, human water use and calibration, Hydrol. Earth Syst. Sci., 18, 3511-3538, doi:10.5194/hess-18-3511-2014, 2014 - Marine ecosystems: Marine Ecoregions of the World, WWF (2007) Marine Ecoregions of the World: A Bioregionalization of Coastal and Shelf Areas (2007) Spalding M Fox H Allen G Davidson N Ferdaña Z et. al. BioScience 2007 vol: 57 (7) pp: 573-583 - Fishing areas: FAO Statistical Areas for Fishery Purposes - FAO Statistical areas (Marine ) - No coastline (for use with custom coastline resolutions) - GIS data (WFS - SHP). FAO (2019). FAO Statistical Areas for Fishery Purposes. In: FAO Fisheries and Aquaculture Department [online]. Rome.
DOI: 10.6084/m9.figshare.11608089.v1
title: 2018 04 07 Independent Sighting by a Third Party

description: Notes and discussion of the independent sighting by a third party that occurred in the Brendan T. Byrne State Forest on 7 April 2018.<br>Project order 86a.
DOI: 10.6084/m9.figshare.14135879.v6
title: Human parietal bone section (male, 5 months, craniosynostosis) CT Stack

description: Section of a human cranium of a 5-month-old male with cranial synostosis. <br>Voxel size: 0.009 mm <br>The samples were retrieved following ethical approval and patient consent.<br><br>
DOI: 10.6084/m9.figshare.27157632.v1
title: TPM data of Apis cerana japonica worker.

description: Tpm matrix data of Apis cerana japonica worker.
DOI: 10.6084/m9.figshare.8096429.v3
title: A Sign of the Times: Dataset of US Congress signed network backbones from co-sponsorship data, 1973-2016

description: Each tab contains the signed network for a chamber of congress (H = House, S = Senate) in one session (e.g. 93 = 93rd session of congress).<br><br>The first row identifies the representative or senator, with their party affiliation and state; these are square matrices with columns arranged in the same order.<br><br>In each cell, 1 = the congresspeople have a positive relationship, -1 = the congresspeople have a negative relationship, 0 = the congresspeople have no relationship.<br><br>Relationships are inferred from bill co-sponsorship data using the Stochastic Degree Sequence Model; see the following articles for more details:<br>Neal, Z. P. (In press). A sign of the times? Weak and strong polarization in the U.S. Congress, 1973-2016. Social Networks. Doi:10.1016/j.socnet.2018.07.007<br><br>Neal, Z. P. (2014). The backbone of bipartite projections: Inferring relationships from co-authorship, co-sponsorship, co-attendance and other co-behaviors. Social Networks, 39, 84-97. Doi:10.1016/j.socnet.2014.06.001
DOI: 10.6084/m9.figshare.21998168.v1
title: Supplementary Material for: Perseverative Cognition and Psychotic-Like Experiences in Young Adults: A Cross-Lagged Panel Model

description: Psychotic-like experiences (PLEs), including persecutory ideation, bizarre experiences, and perceptual abnormalities, are considered risk factors for psychotic disorders and mental distress in the general population. The cognitive-affective mechanisms associated with PLEs remain under-investigated. We aimed to longitudinally assess the reciprocal associations between perseverative cognition (PC), an emerging transdiagnostic factor of psychopathology, and PLEs facets in young adults. Participants (<i>n</i> = 160) from the general population completed measures of PC and PLEs at baseline and at 2-month follow-up. A two-wave, three-variable, cross-lagged panel model was implemented controlling for well-established correlates of PC and PLEs such as depression, anxiety, and symptoms of sleep disturbance. Both PLEs and PC exhibited substantive rank-order stability (β ranged from 0.359 to 0.657, <i>ps</i> &lt; 0.001). Cross-lagged effects revealed that baseline PC was associated with bizarre experiences at 2-month follow-up (β = 0.317; <i>p</i> &lt; 0.01). This effect overcame the well-established cut-off for practical significance. In contrast, no baseline PLEs were associated with PC at follow-up. Findings suggest the presence of a monodirectional, rather than bidirectional, association between PC and bizarre experiences in young adulthood. Results should be interpreted in light of the relatively small, non-clinical, and convenient sample.