cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26553803.v1
title: Additional file 4 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

description: Additional file 4: Supplementary Table S4. SV High Confidence Consensus Call Set. The SVs from initial callset are further filtered based on consensus scores, SVs that were called in at least two platform call sets by multiple software tools were selected. Additional filtering applied to remove overlap SVs and SVs on the blacklist regions as well as the on three chromosomal regions with normal loss of heterozygosity LOH (chr6p, chr16q, and chrX) to obtain a high-confidence call set. multiple break point events were named as BNDs and further characterized in Additional file 15.
DOI: 10.6084/m9.figshare.26553815.v1
title: Additional file 8 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

description: Additional file 8: Supplementary Table S8. Affymetrix Array Validation. The Affymetrix CytoScan Array was used for measuring copy number gain and loss.
DOI: 10.6084/m9.figshare.26553809.v1
title: Additional file 6 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

description: Additional file 6: Supplementary Table S6. Bionano validated SVs. Bionano optical mapping was used to profile the SVs. The call set from Bionano were used to validate high confidence call set based on the method described in the methods section.
DOI: 10.5518/242
title: Dataset associated with 'Organically modified clay with potassium copper hexacyanoferrate for enhanced Cs+ adsorption capacity and selective recovery by flotation'

description: Raw numerical data of publication 'Organically modified clay with potassium copper hexacyanoferrate for enhanced Cs+ adsorption capacity and selective recovery by flotation' , including XRD, FTIR,XPS, adsorption and flotation data, etc.
DOI: 10.6084/m9.figshare.26553794.v1
title: Additional file 1 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

description: Additional file 1: Supplementary Table S1. WGS Data Sets from 5 NGS Technologies. WGS Libraries were made from the fresh DNA from HCC1395 and HCC1395BL cell lines. 42 Illumina-short read libraries were prepared by using Illumina TruSeq DNA PCR Free (1000ng) protocol and sequenced on 3 Illumina platforms including NovaSeq, Hiseq and HiSeq 10x across 6 sequencing centers. 22 10X Genomics WGS Linked-read libraries were prepared using 10X Chromium Genome V2 kit and sequenced on illumina HiSeq. 2 PacBio long-read protocol libraries were prepared with 10kb library protocol and sequenced on Sequel V2.1 chemistry. 2 Oxford Nanopore SQK-LSK109 ligation kit prepared libraries were run on MinONT flowcells. 6 Dovetail HiC libraries were prepared using the Dovetail SELVA Library Prep kit and sequenced on Illumina.
DOI: 10.15468/dl.4ttvgm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.392579 -33.802053, 147.392579 -33.811036, 147.394825 -33.811036, 147.394825 -33.802053, 147.392579 -33.802053))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064082-240626123714530/datasets/export for details.
DOI: 10.15468/dl.85p9jg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.767008 -33.802053, 148.767008 -33.806544, 148.769254 -33.806544, 148.769254 -33.802053, 148.767008 -33.802053))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064083-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26553812
title: Additional file 7 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

description: Additional file 7: Supplementary Table S7. PCR-based Validation. A subset of SVs from initial call set and high confidence call set were selected based consensus score for validation.
DOI: 10.6084/m9.figshare.26553812.v1
title: Additional file 7 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

description: Additional file 7: Supplementary Table S7. PCR-based Validation. A subset of SVs from initial call set and high confidence call set were selected based consensus score for validation.
DOI: 10.6084/m9.figshare.26553803
title: Additional file 4 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

description: Additional file 4: Supplementary Table S4. SV High Confidence Consensus Call Set. The SVs from initial callset are further filtered based on consensus scores, SVs that were called in at least two platform call sets by multiple software tools were selected. Additional filtering applied to remove overlap SVs and SVs on the blacklist regions as well as the on three chromosomal regions with normal loss of heterozygosity LOH (chr6p, chr16q, and chrX) to obtain a high-confidence call set. multiple break point events were named as BNDs and further characterized in Additional file 15.
DOI: 10.6084/m9.figshare.26553818.v1
title: Additional file 9 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

description: Additional file 9: Supplementary Table S9. SVs Validated by RNA-seq. For fusion detection from RNA-seq data, we used Star Fusion and Arriba to produce a set of fusion candidates. Gene-fusion events found in the two tools were used to compare with the consensus SV call set to find overlap genes to produce the final integrated SV-Fusion gene call set.
DOI: 10.6084/m9.figshare.26553833.v1
title: Additional file 14 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

description: Additional file 14: Supplementary Table S13. a) Summary of large SVs with size &gt; 30kb called from tumor purity titration and sequencing depth subsampling call sets. b) Summary of large SVs with size 50bp - 30kb called from tumor purity titration and sequencing depth subsampling call sets.
DOI: 10.15468/dl.ycghsa
title: Occurrence Download

description: A dataset containing 1838 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amphisbaena fuliginosa Linnaeus, 1758"
 ]
}

 The dataset includes 1838 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064084-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26553830.v1
title: Additional file 13 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

description: Additional file 13: Supplementary Table S12. Tumor purity study. WGS Libraries were made from pooling the HCC1395 and HCC1395BL cell lines with various ratios (3:1, 1:1, 1:4, 1:9 and 1:19) to create mixtures. Libraries were prepared by using TruSeq DNA PCR Free (1000ng) protocol and sequenced on Illumina HiSeq 4000.
DOI: 10.15468/dl.c2um8x
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.354401 -33.795315, 147.354401 -33.797561, 147.349909 -33.797561, 147.349909 -33.799807, 147.345417 -33.799807, 147.345417 -33.804298, 147.340926 -33.804298, 147.340926 -33.822265, 147.345417 -33.822265, 147.345417 -33.826756, 147.354401 -33.826756, 147.354401 -33.802053, 147.356646 -33.802053, 147.356646 -33.795315, 147.354401 -33.795315))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064085-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13309747
title: Dataset of single-cell transcriptomic matrix of 10 human glioblastoma tissue

description: Dataset of single-cell transcriptomic matrix of 10 human glioblastoma tissue. scRNA-seq was performed using the droplet-based 10x Genomics platform (10x Genomics, Pleasanton, CA, USA). GBM tissues for single-cell RNA sequencing (scRNA-seq) were collected from patients admitted to Xiangya Hospital, Central South University.
DOI: 10.5281/zenodo.13309748
title: Dataset of single-cell transcriptomic matrix of 10 human glioblastoma tissue

description: Dataset of single-cell transcriptomic matrix of 10 human glioblastoma tissue. scRNA-seq was performed using the droplet-based 10x Genomics platform (10x Genomics, Pleasanton, CA, USA). GBM tissues for single-cell RNA sequencing (scRNA-seq) were collected from patients admitted to Xiangya Hospital, Central South University.
DOI: 10.6084/m9.figshare.26553836.v1
title: Additional file 15 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

description: Additional file 15: Supplementary Table S14. Bionano somatic SVs called from tumor sample in at least two of the three replicates and were not normal sample.
DOI: 10.6084/m9.figshare.26553836
title: Additional file 15 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

description: Additional file 15: Supplementary Table S14. Bionano somatic SVs called from tumor sample in at least two of the three replicates and were not normal sample.
DOI: 10.5519/qd.touei9ql
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5884061 records)
DOI: 10.15468/dl.h3pvk4
title: Occurrence Download

description: A dataset containing 2528 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aythya baeri (Radde, 1863)"
 ]
}

 The dataset includes 2528 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064086-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.smkdeu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.370121 -33.815527, 147.370121 -33.817773, 147.372367 -33.817773, 147.372367 -33.815527, 147.370121 -33.815527))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064087-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26558450
title: Additional file 5 of Historical tsunami observability for Izu–Bonin–Mariana sources

description: Additional file 5: Figure S4. Example waveforms comparing the effects of dispersion on tsunami from the Mw 9.0 source in the South Mariana subduction zone at (a.) Kochi, (b.) Tanabe, and (c.) Miho, Japan. All three locations are approximately 2600 km away from the tsunami source and show only minor changes to higher frequency components of the waveforms as predicted using Eq. (1) in Shuto (1991). Both waveforms with and without dispersion were calculated with JAGURS (Baba et al. 2015).
DOI: 10.6084/m9.figshare.26558450.v1
title: Additional file 5 of Historical tsunami observability for Izu–Bonin–Mariana sources

description: Additional file 5: Figure S4. Example waveforms comparing the effects of dispersion on tsunami from the Mw 9.0 source in the South Mariana subduction zone at (a.) Kochi, (b.) Tanabe, and (c.) Miho, Japan. All three locations are approximately 2600 km away from the tsunami source and show only minor changes to higher frequency components of the waveforms as predicted using Eq. (1) in Shuto (1991). Both waveforms with and without dispersion were calculated with JAGURS (Baba et al. 2015).
DOI: 10.6084/m9.figshare.26558474.v1
title: Additional file 1 of Prevalence of wasting and associated factors among children aged 2–5 years, southern Ethiopia: a community-based cross-sectional study

description: Additional file 1.
DOI: 10.6084/m9.figshare.26553797.v1
title: Additional file 2 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

description: Additional file 2: Supplementary Table S2. Tool Specific SV Calls. SVs called by Novobreak, Manta, Delly and TNScope were using the tumor-normal pair mode to obtain tumor specific somatic calls, while the rest of the software called the SVs from tumor and normal samples separately. The tumor specific somatic calls were used Survivor software to subtract the SVs from matched normal sample.
DOI: 10.6084/m9.figshare.26553800.v1
title: Additional file 3 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

description: Additional file 3: Supplementary Table S3. SV Initial Call Set. The initial callset were obtained from integration of tool specific SVs from multiple replicates using Survivor software, only the SVs present in at least two replicates were selected into the initial call set.
DOI: 10.15468/dl.uf73d5
title: Occurrence Download

description: A dataset containing 429 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lipotriches orientalis (Friese, 1909)"
 ]
}

 The dataset includes 429 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0233559-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.huv2m2
title: Occurrence Download

description: A dataset containing 21367 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arthropoda, Nematoda, Tardigrada, Rotifera, Annelida, Mollusca, Platyhelminthes)",
 "Geometry POLYGON ((-82.149994 29.823359, -82.146916 29.552663, -81.837289 29.554975, -81.839537 29.825697, -82.149994 29.823359))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 {
 "not" : {
 "CoordinateUncertaintyInMeters" : [
 "is one of (301, 3036, 999, 9999)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 21367 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0233582-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kcrqcq
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tytthus chinensis (Stal, 1859)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0224842-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m3fy8r
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus jaliscana Pérez de la Rosa"
 ]
}

 The dataset includes 102 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258591-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxneb9
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bastilla fulvotaenia (Guenée, 1852)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220838-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nh96kb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mendoza suguroi Baba, 2013",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0223640-220831081235567/datasets/export for details.
DOI: 10.15468/dl.ng2djw
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "GadmGid is ESP.4_1",
 "Geometry POLYGON((-15.89854 36.04369,8.89854 36.04369,8.89854 45.95631,-15.89854 45.95631,-15.89854 36.04369))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Moehringia intricata subsp. castellana J.M.Monts."
 ]
}

 The dataset includes 110 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007419-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmyxb3
title: Occurrence Download

description: A dataset containing 2317 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "TaxonKey is Ceratotherium simum (Burchell, 1817)"
 ]
}

 The dataset includes 2317 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0265775-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvtzdg
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clivina yanoi Kult, 1951",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0224851-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2wady8
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rouleina guentheri (Alcock, 1892)"
 ]
}

 The dataset includes 219 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0265778-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76shhx
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chlaenius praefectus Bates, 1873",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0224849-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzqq7b
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Afrosolen abyssinicus (R.Br. ex A.Rich.) Goldblatt & J.C.Manning"
 ]
}

 The dataset includes 62 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004007-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2f3dtn
title: Occurrence Download

description: A dataset containing 4028 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bromus ciliatus L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4028 records from 178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035879-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.33pj7s
title: Occurrence Download

description: A dataset containing 4369 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Piranga erythrocephala (Swainson, 1827)"
 ]
}

 The dataset includes 4369 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258595-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzc4be
title: Occurrence Download

description: A dataset containing 10804 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "DatasetKey is Observation.org, Nature data from around the World",
 "Geometry POLYGON((59.97231 6.46694,90.90675 6.46694,90.90675 18.83542,59.97231 18.83542,59.97231 6.46694))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1901-2022"
 ]
}

 The dataset includes 10804 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0213389-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bn64nx
title: Occurrence Download

description: A dataset containing 62067 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Himantoglossum robertianum (Loisel.) P.Delforge"
 ]
}

 The dataset includes 62067 records from 353 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0247325-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zb4q9g
title: Occurrence Download

description: A dataset listing the 83005 species recorded in GBIF matching the query:
{
 "Country" : [
 "is Madagascar"
 ]
}

 The dataset's 83005 records were derived from 1554 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0213387-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15188971
title: DigiMedFor T4.2 models datsets both aerial and ground images and datasets from aerial multispectral

description: DigiMedFor T4.2 models' datsets both aerial and ground images from Limnia Forest (ground images also include complementary pine images from Seih sou and Dam Thermi forest images for testing purposes.)

Also includes datasets of multispectral aerial images taken from Limnia and mainly of Thermi Dam forest focused on waterbodies and streams.
DOI: 10.5281/zenodo.15188972
title: DigiMedFor T4.2 models datsets both aerial and ground images and datasets from aerial multispectral

description: DigiMedFor T4.2 models' datsets both aerial and ground images from Limnia Forest (ground images also include complementary pine images from Seih sou and Dam Thermi forest images for testing purposes.)

Also includes datasets of multispectral aerial images taken from Limnia and mainly of Thermi Dam forest focused on waterbodies and streams.