cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p906k5gz
title: Datasets and scripts used for estimating streamflow and base flow within the nontidal Chesapeake Bay riverine system, water years 2006-15

description: This U.S. Geological Survey (USGS) data release contains estimated daily streamflow and base flow for HUC12 in the nontidal areas of the Chesapeake Bay watershed, monthly average streamflow and base flow, flow statistics, MATLAB scripts, and a document that describes how to create similar datasets in other watersheds. Daily streamflow was estimated for all the nontidal parts of the Chesapeake Bay watershed with the program &amp;amp;quot;Unit Flows in Networks of Channels&amp;amp;quot; (UFINCH; Holtschlag, 2016), together with the observations of measured streamflow at gages at the downstream ends of major rivers. The estimated streamflow was aggregated at the HUC12 level and reformatted as an Optimal Hydrograph Separation (OHS) input file using MATLAB scripts. Base flow was calculated at each HUC12 outlet using the base flow index (BFI) hydrograph separation methods developed by Wahl and Wahl (Wahl and Wahl, 1988; Wahl and Wahl, 1995) and by Eckhardt (Eckhardt, 2005) with the parameter estimation method developed by Collischonn and Fan (Collischonn and Fan, 2013) which are incorporated into the OHS program (Raffensperger and others, 2017). This data release supports the following publication: Buffington, P.C., and Capel, P.D., 2020, Estimating streamflow and base flow within the nontidal Chesapeake Bay riverine system: U.S. Geological Survey Scientific Investigations Report 2020-5055, 26 p., https://doi.org/10.3133/sir20205055. References cited: Collischonn, W. and Fan, F.M., 2013, Defining parameters for Eckhardt's digital baseflow filter: Hydrological Processes, v. 27, no. 18, p. 2614-2622, https://doi.org/10.1002/hyp.9391. Eckhardt, K., 2005, How to construct recursive digital filters for baseflow separation: Hydrological Processes, v. 19, no. 2, p. 507-515, https://doi.org/10.1002/hyp.5675. Holtschlag, D.J., 2016, UFINCH-A method for simulating unit and daily flows in networks of channels described by NHDPlus using continuous flow data at U.S. Geological Survey streamgages: U.S. Geological Survey Scientific Investigations Report 2016-5074, 17 p., https://doi.org/10.3133/sir20165074. Raffensperger, J.P., Baker, A.C., Blomquist, J.D., and Hopple, J.A., 2017, Optimal hydrograph separation using a recursive digital filter constrained by chemical mass balance, with application to selected Chesapeake Bay watersheds: U.S. Geological Survey Scientific Investigations Report 2017-5034, 51 p., https://doi.org/10.3133/sir20175034. Wahl, K.L., and Wahl, T.L., 1988, Effects of regional ground water declines on streamflows in the Oklahoma Panhandle, in Symposium on Water-Use Data for Water Resources Management, Tucson, Arizona, American Water Resources Association, p. 239-249. Wahl, K.L., and Wahl, T.L., 1995, Determining the flow of Comal Springs at New Braunfels, Texas, Texas Water '95: San Antonio, Texas, American Society of Civil Engineers, p. 77-86, http://www.usbr.gov/tsc/techreferences/hydraulics_lab/pubs/PAP/PAP-0708.pdf.
DOI: 10.15468/asws4h
title: Agistemus collyerae (Acari: Trombidiformes: Stigmaeidae) in South Africa: first record, introduction pathways and a re-description including additional life stages

description: This dataset contains the digitized treatments in Plazi based on the original journal article Saccaggi, Davina L., Ueckermann, Edward A. (2018): Agistemus collyerae (Acari: Trombidiformes: Stigmaeidae) in South Africa: first record, introduction pathways and a re-description including additional life stages. Acarologia 58 (1): 116-130, DOI: 10.24349/acarologia/20184235
DOI: 10.6084/m9.figshare.13713226
title: Docked poses for "Learning from Docked Ligands: Ligand-Based Features Rescue Structure-Based Scoring Functions When Trained On Docked Poses"

description: Docked poses for ligands from the PDBbind and ChEMBL databases, used in the follwoing manuscript:<br>Boyles, Fergus; Deane, Charlotte M; Morris, Garrett (2021): Learning from Docked Ligands: Ligand-Based Features Rescue Structure-Based Scoring Functions When Trained On Docked Poses. ChemRxiv. Preprint. https://doi.org/10.26434/chemrxiv.13637756.v1 <br><br>Note: these poses were re-generated using the parameters described in the manuscript following corruption of the backup of the tarball containing the docked poses for the PDBbind ligands. <br>
DOI: 10.6084/m9.figshare.13713226.v1
title: Docked poses for "Learning from Docked Ligands: Ligand-Based Features Rescue Structure-Based Scoring Functions When Trained On Docked Poses"

description: Docked poses for ligands from the PDBbind and ChEMBL databases, used in the follwoing manuscript:<br>Boyles, Fergus; Deane, Charlotte M; Morris, Garrett (2021): Learning from Docked Ligands: Ligand-Based Features Rescue Structure-Based Scoring Functions When Trained On Docked Poses. ChemRxiv. Preprint. https://doi.org/10.26434/chemrxiv.13637756.v1 <br><br>Note: these poses were re-generated using the parameters described in the manuscript following corruption of the backup of the tarball containing the docked poses for the PDBbind ligands. <br>
DOI: 10.5066/p9tfrp5d
title: Digital datasets documenting subsurface data locations, topographic metrics, fault scarp mapping, and revised fault network for Crowley's Ridge, New Madrid Seismic Zone

description: This release provides the data and interpretations supporting evidence of late Quaternary faulting along Crowleys Ridge in the New Madrid seismic zone. The release includes location information for seismic reflection and airborne electromagnetic (AEM) data over Crowleys Ridge, a table of topographic metrics derived from analysis of the 10m National Elevation Dataset (NED) digital elevation model (DEM), a shapefile of scarps mapped on a 1m bare-earth lidar DEM, and a shapefile of a revised New Madrid seismic zone fault network interpretation.
DOI: 10.5066/p9c17pa0
title: Methylmercury and associated data in macroinvertebrates from tributaries of Honnedaga Lake and from the Middle Branch Black River in New York.

description: Macroinvertebrate samples were collected from streams tributary to Honnedaga Lake and from the Middle Branch of the Black River during 2012-2016 and analyzed for methylmercury concentrations and for stable isotope ratios of nitrogen and carbon. Macroinvertebrates were identified in the field, and the level of taxonomic resolution varied from order to species; most taxa were identified to the family level. Specimens were field-processed into composite samples, field-frozen, and submitted to the mercury laboratory for freeze-drying and analysis. Subsamples were then submitted to the stable isotope laboratory for analysis of nitrogen and carbon isotope ratios. This database contains the resulting data and associated information for these composite samples of whole macroinvertebrates.
DOI: 10.5066/p9gsoujg
title: Data for food matrix reference materials for hydrogen, carbon, nitrogen, oxygen, and sulfur stable isotope-ratio measurements

description: An international project developed, quality-tested, and measured isotope-delta values of 10 new food matrix reference materials (RMs) for hydrogen, carbon, nitrogen, oxygen, and sulfur stable isotope-ratio measurements to support food authenticity testing and food provenance verification. These new RMs, USGS82 to USGS91, will enable users to normalize measurements of samples to isotope-delta scales. The RMs include (i) two honeys, from Canada and tropical Vietnam, (ii) flours from C3 (rice) and C4 (millet) plants, (iii) four vegetable oils from C3 (olive, peanut) and C4 (corn) plants, and (iv) collagen powders from marine fish and terrestrial mammal origins.
DOI: 10.5066/p9r84w5k
title: Contiguous US and Global streamflow gages measuring zero flow

description: We report the site number and locations of 5798 streamflow gages displaying zero flow for at least one day in their daily records. 4891 of these gages are from the GRDC network, and 906 are USGS gages in the contiguous US. Additionally, provisional data for two USGS gages 1) Rio Puerco near Bernardo, NM (USGS site: 08353000) and 2) Agua Fria River Near Mayer, AZ (USGS site: 09512500) are provided to illustrate zero flow record behaviors.
DOI: 10.17632/k7xk2nwgrh.2
title: Medjool-date images

description: Medjool dates are primum dates which require thinning. Images of Medjool date fruit-bunches were taken as part of a large scale project for developing a robotic Medjool thinning system. The images were used for determining required robotic motion parameters. Each fruit-bunch includes a rachis and spikelets. The database includes two files: images.zip - 146 images of fruit-bunches from 13 Medjool date palms. The images were taken in 2019 from two Medjool farms in the Southern Arava region of Israel during the beginning and middle of the thinning period. The images were acquired with a digital single-lens reflex (DSLR) camera (NIKON D5600, USA) with a resolution of 4000×6000 pixels. masks_npz_2cl.zip - Ground truth masks for two classes (spikelets and rachis) manually annotated for all the fruit-bunches in each image in npz format. Each mask is a 4000×6000×N matrix (where N is the number of ground truth instances of spikelets and rachises, in the image) so that each instance is documented in a separate 4000×6000×1 binary mask. The masks are sequentially ordered such that a mask of the rachis follows the mask of the spikelets. An empty mask is defined in case the rachis was not visible (spikelets were always visible).
DOI: 10.17632/35ksks3k3n.1
title: Smc5/6 functions jointly with the Sgs1-Top3-Rmi1 DNA resolvase to complete chromosome replication at natural pause sites
DOI: 10.17632/8zm7zkrrnb.1
title: Mantle and crustal controls on the geochemical and isotopic evolution of collisional magmatism: NE Iran

description: Magmatic activity that accompanied the collision between Arabia and Eurasia at ~27 Ma, provides unique opportunities for understanding the triggers and magma reservoirs for collisional magmatism and its different styles in magmatic front and back-arcs. We present new ages and geochemical-isotopic results for magmatic rocks that formed during the collision between Arabia and Eurasia in NE Iran, which was a back-arc region to the main magmatic arcs of Iran. We also compile an inclusive dataset for igneous rocks that formed before, during and after the collision between Arabia and Eurasia, from both the back-arc and the magmatic front (Urumieh-Dokhtar Magmatic Belt) of Iran. Our new zircon U-Pb ages indicate that collisional magmatism began at ~24 Ma in the NE Iran back-arc, although magmatism in this area started in Late Cretaceous time and continued until the Pleistocene. The collisional igneous rocks are characteristically bimodal, and basaltic-andesitic and dacitic-rhyolitic components show significant isotopic differences; εNd(t)= +4.4 to +7.4 and εHf(t)= +5.4 to +9.5 for mafic rocks and εNd(t)= +0.2 to +8.4 and εHf(t)= +3.4 to +12.3 for silicic rocks. The isotopic values and modelling suggest that fractional crystallization and assimilation-fractional crystallization play important roles in the genesis of the NE Iran collisional volcanic rocks. Isotopic modelling further emphasises that three components, comprising a depleted mantle, an enriched lithospheric mantle similar to the source of the Main Ethiopian Rift lavas, and the Cadomian continental crust of Iran were the main magmatic triggers. Our results also emphasise the temporal and spatial magmatic variations both in the NE Iran back-arc and between the magmatic front and the NE Iran back-arc.
DOI: 10.17632/26vywtfkrz.2
title: Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi - data and code

description: Code
DOI: 10.5066/p92tk6bs
title: Influence of demand and capacity in transportation simulations of short-notice, distant-tsunami evacuations

description: Distant tsunamis require short-notice evacuations in coastal communities to minimize threats to life safety. Given the available time to evacuate and potential distances out of hazard zones, coastal transportation planners and emergency managers can expect large proportions of populations to evacuate using vehicles. A community-wide, short-notice, distant-tsunami evacuation is challenging because it creates a sudden, significant, and concentrated demand on road-network systems. Transportation planners and emergency managers need methods to help them determine if a road network can handle an evacuation surge and if not, where interventions can best reduce overall clearance times. We use the coastal community of Bay Farm Island (City of Alameda, California, USA) and the distant tsunami threat posed by Aleutian-Alaskan earthquakes as a case study to explore the use of agent-based, transportation simulation to support short-notice, tsunami-evacuation planning. Results include estimates of varying scenarios of vehicle demand during an evacuation, evacuation clearance time estimations across these scenarios, and a selection of clearance time estimations for varying strategies to improve evacuation, including route choice, demand reduction, and capacity improvements.
DOI: 10.5066/p9wmrbmv
title: Fecundity data for midcontinent sandhill cranes, 2003-2006

description: Midcontinent sandhill cranes (Antigone canadensis) are the most abundant management population of cranes in the world and have a broad breeding range. Four breeding segments of midcontinent sandhill cranes have been designated based on spatial and temporal distributions throughout the year, including Western Alaska-Siberia (WA-S), Northern Canada-Nunavut (NC-N), West-central Canada-Interior Alaska (WC-A) and East-central Canada-Minnesota (EC-M). WA-S and NC-N cranes primarily are composed of the lesser sandhill crane (A. c. canadensis) subspecies that breeds in the arctic, whereas WC-A and EC-M cranes are composed primarily of greater sandhill cranes (A. c. tabida), birds which breeds in northern parts of temperate and subarctic regions. Existing information on annual recruitment rates come primarily from ground surveys conducted on fall staging areas in Saskatchewan during the 1960s and 1970s. It is unclear whether recruitment rates have changed over the past several decades during a period of a marked increase in harvest and changing climate and land use. More recent data described in the metadata file were used to estimate fecundity of sandhill cranes to parameterize a population dynamics model. The model was developed to evaluate effects of varying harvest rates on population dynamics, including consequences of differential harvest of segments. These data also were used to compare estimates of annual recruitment derived from fall age ratio surveys with those from individually marked individuals.
DOI: 10.17632/js2nzwf5md.1
title: Dataset for "XRF and XRPD data sets in ternary mixtures with high level micro-absorption and/or preferred orientations problems for phase quantification analysis"

description: XRF and XRPD data were collected on four different mixture experimental domain, each containing one or more common issues for phase quantification: micro-absorption and preferred orientations. Simplex-Centroid experimental design was used to homogeneously explore the experimental domain. Microabsorption and preferred orientations were included in a controlled way, by choosing the appropriate components each time. The datasets are respectively: - D1: A three component mixture containing bismuth oxide (MM: 208.980 g/mol, density: 8.93 g/cm^3, Z of the heaviest element: 83), barium sulfate (MM: 137.327 g/mol, density: 4.48 g/cm^3, Z of the heaviest element: 56) and sieved graphite (MM: 12.01 g/mol, density: 2.23 g/cm^3, Z of the heaviest element: 6) with a particle size lower than 90 micrometers (non-oriented). - D2: A three component mixture containing bismuth oxide (MM: 208.980 g/mol, density: 8.93 g/cm^3, Z of the heaviest element: 83), barium sulfate (MM: 137.327 g/mol, density: 4.48 g/cm^3, Z of the heaviest element: 56) and sieved graphite (MM: 12.01 g/mol, density: 2.23 g/cm^3, Z of the heaviest element: 6), divided in about 70 % sieved graphite with a particle size lower than 90 micrometers (non-oriented) and 30% sieved graphite with particle size higher than 90 micrometers (oriented). - D3: A three component mixture containing bismuth oxide (MM: 208.980 g/mol, density: 8.93 g/cm^3, Z of the heaviest element: 83), barium sulfate (MM: 137.327 g/mol, density: 4.48 g/cm^3, Z of the heaviest element: 56) and zinc acetate (MM: 219.528 g/mol, density: 1.74 g/cm^3, Z of the heaviest element: 30). - D4: A three component mixture containing bismuth oxide (MM: 208.980 g/mol, density: 8.93 g/cm^3, Z of the heaviest element: 83), barium sulfate (MM: 137.327 g/mol, density: 4.48 g/cm^3, Z of the heaviest element: 56) and urea (MM: 60.06 g/mol, density: 1.32 g/cm^3, Z of the heaviest element: 8). The aim of this datasets is to provide an open-source collection data on which perform quantification analysis by both traditional and innovative methods. More informations are detailed in the data paper "XRF and XRPD data sets in ternary mixtures with high level micro-absorption and/or preferred orientations problems for phase quantification analysis".
DOI: 10.5066/f72b8xct
title: Garden Lake Deer Yard (Lake Co., MN) Migration Data, 1998-2017

description: This dataset contains the capture location and summer location of deer radio-collared in the Garden Lake deeryard, near Ely MN during the summers of 1998, 1999, 2001, 2014, and 2017. The data set also contains the distance and direction deer migrated from capture locations to summer locations.
DOI: 10.17632/bhdznzyycw.1
title: facial emotion

description: The data in files of "面部情绪", "行为" and block 1 were used in experiment 1. The data in new folder was experiment 2. These data were used to analyse the effect of facial emotion and trustworthy behavior on decision making. H1: Participants will invest significantly more in trustworthy players than in untrustworthy players. H2: The facial emotion of players will affect the investment amount of individuals. Happy facial emotion will receive more investment amount, while angry facial emotion will receive less investment amount. H3: When facial emotion and behavioural information are incongruent, participants are more inclined to rely on behavioural information to make trust choices. H4: The arousal of facial emotion influences participants’ trust choices. Players with high-arousal happy facial emotion will receive more investment than those with low-arousal happy facial emotion. H5: Women will invest less in players than men.
DOI: 10.5066/p95khuji
title: Groundwater quality data from Bristol and Cadiz Basins, San Bernardino County, California, USA

description: Water chemistry data from wells drilled by brine operations in Bristol and Cadiz Basins in San Bernardino County, California, USA. These data are used in the Journal article: Rosen, M.R, Stillings, L.L., Kane, T., Campbell-Hay, K., Vitale, M., Spanjers, R., in press, Possible sources and mechanisms of anomalous Li and Ca enrichment in the Bristol Dry Lake brine compared to other playa brines in the Barstow-Bristol Trough, California, USA. Minerals. https://doi.org/min xxxxxxxxx
DOI: 10.15468/tts9qp
title: Two new species of Thrypticus Gerstäcker from Turkey (Diptera, Dolichopodidae) with checklist and key to Palaearctic species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Negrobov, Oleg P., Naglis, Stefan (2020): Two new species of Thrypticus Gerstäcker from Turkey (Diptera, Dolichopodidae) with checklist and key to Palaearctic species. Zootaxa 4858 (1): 111-125, DOI: https://doi.org/10.11646/zootaxa.4858.1.8
DOI: 10.5066/p91p7ozj
title: Fort Belvoir, Virginia, stream-water, streambed-sediment, and soil data collected in 2019

description: Field parameters and chemical-analysis results of stream water, streambed sediment, and soil data collected during 2019 at Fort Belvoir, Virginia are presented.
DOI: 10.17632/z5ws8f3hdj.2
title: LAIV trial 2015

description: This dataset is the complete data for the two-year LAIV efficacy trial conducted by AIIMS ND-CDC team at Ballabgarh, Dist Faridabad, Haryana. It has three sets of files - first one baseline demographic characteristic of study children and other two being surveillance dataset for each of the two years.
DOI: 10.17632/jb5knzh8yv.4
title: Korean Movie Reviews and Historical Ratings of the Reviewer

description: The data sets are Korean movie reviews and historical ratings of the reviewer. We collect them from the Naver Movie website, which has the largest movie database in South Korea. Specifically, we collect movie reviews on 8 movies released from 2015 to 2018. The attributes of each data include the review ID, user ID, review, rating, the number of sympathy votes, the number of unsympathy votes, and timestamp. Especially, the number of symphy votes and that of unsympathy votes of each movie review, which had been evaluated by the other reviewers, can be used to judge the helpfulness of the review. The total number of the collected reviews is 233,928 and its total size reaches 135MB. Moreover, we collect all the historical ratings of the reviewer who writes the review for the target movie. The historical ratings of the reviewer can be the crucial evidence to judge the characteristics of the movie reviewer.
DOI: 10.17632/h9zsnxt64r.3
title: Replication data for "Lumpy Investment, Lumpy Inventories"

description: The codes to replicate the results in "Lumpy Investment, Lumpy Inventories", by Rudiger Bachmann and Lin Ma
DOI: 10.17632/k6wv3kffzs.4
title: Replication data for "Urbanization Policy and Economic Development: A Quantitative Analysis of China’s Differential Hukou Reforms"

description: The codes to replicate the results in "Urbanization Policy and Economic Development: A Quantitative Analysis of China’s Differential Hukou Reforms" by Wen-Tai Hsu and Lin Ma
DOI: 10.17632/p3r2r66y7r.1
title: Tres Virgenes Volcanic Complex - Shear wave splitting data

description: Shear wave splitting data (fast polarization direction and delay time parameters) were used to analyze the seismic anisotropy of the Tres virgenes volcanic field.