cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4972083
title: Dataset from : Browsing is a strong filter for savanna tree seedlings in their first growing season

description: 1: Newly germinated seedlings are vulnerable to biomass removal but usually have at least six months to grow before they are exposed to dry-season fires, a major disturbance in savannas. In contrast, plants are exposed to browsers from the time they germinate, making browsing potentially a very powerful bottleneck for establishing seedlings. 2: Here we assess the resilience of seedlings of 10 savanna tree species to top-kill during the first 6 months of growth. Newly-germinated seeds from four dominant African genera from across the rainfall gradient were planted in a common garden experiment at the Wits Rural Facility and clipped at 1 cm when they were ~2, 3, 4, and 5 months old. Survival, growth, and key plant traits were monitored for the following 2.5 years. 3: Seedlings from environments with high herbivory pressure survived top-kill at a younger age than those from low-herbivore environments, and more palatable genera had higher herbivore-tolerance. Most individuals that survived were able to recover lost biomass within 12 months, but the clipping treatment affected root mass fraction and branching patterns. 4: Synthesis: The impact of early browsing as a demographic bottleneck can be predicted by integrating information on the probability of being browsed and the probability of surviving a browse event. Establishment limitation through early-browsing is an under-recognised constraint on savanna tree species distributions. Data may be used without requesting permission after the the publication of the paper
description: The data represent monthly survival and growth data for ~740 seedlings from 10 species under various levels of clipping. Total data rows : 3287. These were from of four common savanna tree clades: Combretum, Vachellia, Senegalia, and Detarioideae. The species: Colophospermum_mopane Combretum_apiculatum Combretum_collinum Combretum_hereroense Combretum_molle Senegalia_caffra Senegalia_mellifera Senegalia_nigrescens Vachellia_davyi Vachellia_erioloba Vachellia_exuvialis Vachellia_karroo(rbay) Vachellia_sieberiana The study was carried out at the Wits Rural Facility (WRF), a 350 ha research station of the University of the Witwatersrand, in the central savanna Lowveld area of Limpopo Province, South Africa (∼31° 06E, 24°30 S) between (September 2016) and March 2017 approximately. Data was collected by Frank Nyathi in field work. Elizabeth Telford did excavating and weighing the below-ground biomass. Stephen Young, Zemijo Kimmie, Benko Kimmie, and Zaid Kimmie did observational data collection, measuring seedlings and watching impala. Mechanisms Controlling Species Limits in a Changing World. NRF/SASSCAL Grant number 118588
DOI: 10.6084/m9.figshare.13486503
title: Biotic threats dataset

description: The database consists of 28 columns: ID, NNT (non-native tree species), COUNTRY (for which the data are provided), ORGANISM_GROUP, ORDER, FAMILY, GENUS, NAME (scientific name), AUTHOR (author of the scientific name), ORIGIN (continent of origin of the biotic threat), 1ST_OBSERVATION (year of 1st observation), YEAR_ADDED (1 indicates where the year in 1ST_OBSERVATION was filled based on the reference year of publication), eight columns for the different types of damage (BUDS_SHOOTS, FOLIAGE, BARK_CAMBIUM_PHLOEM, WOOD_XYLEM, ROOT, SEEDLINGS_SAPLINGS), LEVEL (level of impact on an individual tree), MAX_AREA (maximum continuous area impacted), AGE_CLASS (tree cohort where impact occurs), CONFIDENCE (confidence level for the provided information), SPECIALISATION, RELATIVE_ORIGIN, REF (references), DATA_PROVIDER (name and email address). The full list of references associated with column REF of the data table is provided in a second file.
DOI: 10.6084/m9.figshare.13486536.v1
title: Biotic threats references

description: This file provides the full reference information for the references of the biotic threats database.
DOI: 10.15161/oar.it/73984
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.5517/ccdc.csd.cc25y2v2
title: CCDC 2023954: Experimental Crystal Structure Determination

description: Related Article: wei cai|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26bz7s
title: CCDC 2036335: Experimental Crystal Structure Determination

description: Related Article: Katarzyna Kazimierczuk, Marco Milanesio, Anna Dołęga, Luca Palin, Maja Walencik, Michał Jurkowski, Eleonora Conterosito|2021|RSC Advances|11|25068|doi:10.1039/D0RA09691A
DOI: 10.5517/ccdc.csd.cc26bz8t
title: CCDC 2036336: Experimental Crystal Structure Determination

description: Related Article: Katarzyna Kazimierczuk, Marco Milanesio, Anna Dołęga, Luca Palin, Maja Walencik, Michał Jurkowski, Eleonora Conterosito|2021|RSC Advances|11|25068|doi:10.1039/D0RA09691A
DOI: 10.5517/ccdc.csd.cc26bz9v
title: CCDC 2036337: Experimental Crystal Structure Determination

description: Related Article: Katarzyna Kazimierczuk, Marco Milanesio, Anna Dołęga, Luca Palin, Maja Walencik, Michał Jurkowski, Eleonora Conterosito|2021|RSC Advances|11|25068|doi:10.1039/D0RA09691A
DOI: 10.5281/zenodo.4751523
title: Data: Firefly Luciferase offers superior performance to AkaLuc for tracking the fate of administered cell therapies

description: This data set includes all the raw data collected for the following article: "Firefly Luciferase offers superior performance to AkaLuc for tracking the fate of administered cell therapies".
description: This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Actions, grant agreement No 813839, Innovative Training Network RenalToolBox
DOI: 10.5281/zenodo.4751522
title: Data: Firefly Luciferase offers superior performance to AkaLuc for tracking the fate of administered cell therapies

description: This data set includes all the raw data collected for the following article: "Firefly Luciferase offers superior performance to AkaLuc for tracking the fate of administered cell therapies".
description: This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Actions, grant agreement No 813839, Innovative Training Network RenalToolBox
DOI: 10.5281/zenodo.5140036
title: Raw data of peacock butterflies

description: We provide the raw peacock butterfly data. The id from waarnemingen.be, scientific name (always Aglais io), date, time (when available), number of individuals, lifestage, the coordinates x and y in Lambert 1972 (EPSG:<em>31370</em> Projected coordinate system for Belgium) and lon, lat in WGS84, the municipality in in Belgium (due to a mistake, this column is named community in the data file), the link to the original observation and the number of photo's included in this observation.
DOI: 10.5281/zenodo.5140035
title: Raw data of peacock butterflies

description: We provide the raw peacock butterfly data. The id from waarnemingen.be, scientific name (always Aglais io), date, time (when available), number of individuals, lifestage, the coordinates x and y in Lambert 1972 (EPSG:<em>31370</em> Projected coordinate system for Belgium) and lon, lat in WGS84, the municipality in in Belgium (due to a mistake, this column is named community in the data file), the link to the original observation and the number of photo's included in this observation.
DOI: 10.6084/m9.figshare.13486536
title: Biotic threats references

description: This file provides the full reference information for the references of the biotic threats database.
DOI: 10.5282/ubm/data.246
title: Community transformation and ecological restoration in Portland, Oregon, and Munich, Bavaria

description: Situated in the field of environmental humanities, this doctoral research has a specific emphasis on the history of urban cycling. With a long-durée approach, the project investigates cycling practices in Portland and Munich, approximately between 1880 and 2000. The research inquires how cycling cultures and planning have developed in these two cities – among the very firsts in the world to accommodate bicycles. In addition to uncovering their cycling history, this comparison of cities of similar background and geographical features identifies commonalities and differences, and creates a framework to understand how cycling cultures emerge and evolve. Methodologically, the study relies on narrative, archival research, and first-hand accounts of cycling explorations. Beyond global trends and ready-made "good practices packages", this thesis argues for a contextual – historical – examination as a more sensitive transportation planning approach for municipalities.
DOI: 10.17632/nn9j29fmsc.1
title: Excel Calculations & Tabular Data for the article titled "Customer Efficiency as a measure of Customer Lifetime-Value: An alternative approach to CLV based Segmentation"

description: Excel Calculations & Tabular Data for the article titled "Customer Efficiency as a measure of Customer Lifetime-Value: An alternative approach to CLV based Segmentation"
DOI: 10.17632/mgnsksyh8b.1
title: Supporting policies toward the trans* community’ rights

description: Rdata file
DOI: 10.17632/vwm4b5h39r.1
title: Management Information Systems in Indonesia Research Dataset (1989-2020)

description: The management information systems in Indonesia research and publication dataset, which was indexed by Scopus from 1989 to 2020. The dataset contains data authors, authors ID Scopus, title, year, source title, volume, issue, article number in Scopus, DOI, link, affiliation, abstract, index keywords, references, Correspondence Address, editors, publisher, conference name, conference date, conference code, ISSN, language, document type, access type, and EID.
DOI: 10.17632/2p9m5jzpzj.1
title: Optogenetic actuator/biosensor circuits for large-scale interrogation of ERK dynamics identify sources of MAPK signaling robustness

description: Experimental data and R/Python scripts required to reproduce the figures from the accompanying publication: Dessauges et al. "Optogenetic actuator/biosensor circuits for large-scale interrogation of ERK dynamics identify sources of MAPK signaling robustness".
DOI: 10.17632/wjy3d4cff2.1
title: Parasocial identification and the impact on travel intentions

description: Respondents were selected on the basis of having watched at least one of the eight seasons (without missing an episode), on the assumption that the viewers of long-running TV shows will have experienced some degree of parasocial identification. Data was analysed with PLS-SEM.
DOI: 10.17632/6w7jbdmpj2.1
title: CDX2 inducible microRNA signature negatively regulates colon adenocarcinoma by targeting multiple DNA damage response factors
DOI: 10.17632/nhb5fdr453.1
title: Acetylome and Proteome from Human Adipose Tissue

description: Characterization human adipose tissue acetylome in obesity and insulin resistance conditions. Lean individuals (Lean: BMI &lt; 25; Glu &lt; 100 mg/dL; HbA1c &lt; 5,7%), obese normoglycemic patients (Ob-NG: BMI &lt; 40; Glu &lt; 100 mg/dL; HbA1c &lt; 5,7%) and obese insulin resistance (Ob-IR: BMI &lt; 25; Glu &lt; 100-125 mg/dL; HbA1c &gt; 5,7%). Samples were prepared to protein enrichment and analysed using a Dionex Ultimate 3000 nano-LC system in tandem with a linear quadrupole ion trap-Orbitrap mass spectrometer equipped with a nanoelectrospray ion source.
DOI: 10.17632/hth9bpkt55.1
title: 2021TafollaSupplementaryMaterial

description: Contains supplementary material and data generated in the experimental work of Treatment of waste activated sludge (WAS) by steam explosion and two staged anaerobic digestion (2021). Revista Mexicana de Ingeniería Química 20, 3, IA2388. https://doi.org/10.24275/rmiq/IA2388 which studies the main operations of a this process to increase the transformation of the floc solids (cells and extracellular polymeric substances) into volatile fatty acids and eventually methane and carbonic gas. The process is bases in alkaline steam explosion of the concentrated WAS and further treat the remaining solids by alkaline fermentation. Overall the process will transform 77% of the produced solids in 10 days retention time as compared to 65% in 30 days. The use of a flow cytometer is proposed to monitor the destruction of flocs as an alternative to the gravimetry. This material contains figures of the main equipment used: a bench scale steam explosion reactor and a lab scale UASB. It also contains a figure following the volatile fatty acid during the continuous alkaline fermentation. An excell file of steam exploded waste activated sludge and alkaline fermentation of the exploded suspension. Also data from the flow cytometer and the correlations with the conventional gravimetric method.
DOI: 10.17632/646mjvvxbk.3
title: LookCrim Curated Dataset

description: This data was collected throughout the research project "LookCrim: Looking at Crime - Communities and Physical Spaces" (PTDC/DIR-DCP/28120/2017), held at University Fernando Pessoa, and financially supported by The Fundação para a Ciência e a Tecnologia (FCT). Briefly, this curated dataset provides information about (in)security, crime, victimization, school climate, and characteristics of physical spaces from the Historic Center of Porto (Portugal), based on three sources of information: Diagnosis of Local Security, Diagnosis of School Context, and Observations of Physical Spaces.
DOI: 10.17632/w4zscr6n6s.1
title: Acetylome and Proteome from 3T3-L1

description: Characterization acetylome and proteome from in vitro model of insulin resistance based on high glucose and high insulin (HGHI) concentrations in 3T3-L1 adipocytes. Samples were prepared to protein enrichment and analysed using a Dionex Ultimate 3000 nano-LC system in tandem with a linear quadrupole ion trap-Orbitrap mass spectrometer equipped with a nanoelectrospray ion source.
DOI: 10.17632/kbvg3j3h3k.2
title: Survey data on the consequences of COVID-19 and home confinement on the educational community and families

description: Dataset concerning the consequences of the COVID-19 pandemic and home confinement on the educational community and families, and the possibilities and opportunities for the return to schools. Data were collected through an online based cross-sectional survey between June 29, 2020 and July 12, 2020 in Spain. A total of 7,305 people who had children in their care during the COVID-19 crisis and the home-confinement period responded to the survey. The survey contained items concerning (i) socio-demographic information, (ii) conciliation of work, personal and family life during confinement, (iii) the impact of the pandemic on the respondent's family, and (iv) the respondents' opinion on their child(ren)'s return to school.
DOI: 10.17632/n8nkdgd258.1
title: Dysregulated oxalate metabolism is a driver and therapeutic target in atherosclerosis. Liu et al

description: Dysregulated glycine metabolism is emerging as a common denominator in cardiometabolic diseases, but its contribution to atherosclerosis remains unclear. Here we demonstrate impaired glycine and oxalate metabolism through the alanine-glyoxylate aminotransferase (AGXT) enzymatic pathway in atherosclerosis. As found in atherosclerotic patients, glycine/oxalate ratio was significantly decreased in atherosclerotic mice concomitant with suppression of AGXT. We deleted Agxt in apolipoprotein E-deficient (Apoe-/-) mice and found decreased glycine/oxalate ratio and increased atherosclerosis. Transcriptomics revealed enrichment of pro-atherogenic pathways in the liver, predominantly cytokine/chemokine signaling and dysregulated redox homeostasis. Consistently, aortic C-C motif chemokine ligand 5 (CCL5) and superoxide in lesional macrophages were increased. Similar findings were observed using a dietary model of oxalate overload in Apoe-/- mice. In macrophages, oxalate induced mitochondrial dysfunction and superoxide accumulation leading to increased CCL5. Conversely, adeno-associated virus-mediated overexpression of AGXT in Apoe-/- mice increased the glycine/oxalate ratio and decreased aortic superoxide, CCL5 and atherosclerosis. Collectively, we identified dysregulated oxalate metabolism via suppressed AGXT as a driver and therapeutic target in atherosclerosis.
DOI: 10.17632/drv825hp82.1
title: Data on Growth, Productivity, Pigments and Proximate Composition of Freshwater Microalgae Scenedesmus sp. culture in nitrogen stress

description: Fig.1 - Data on Cell density, Optical density, Biomass Fig.2 - Data on Chlorophyll a,b Fig.3 - Data on total chlorophyll Fig.4 - Data on carotenoid Fig.5 - Data on proximate composition Table 1 - Data on Volumetric, areal, lipid productivity, SGR, Cell doubling time Table 2 - Data on total phycobiliprotein
DOI: 10.17632/572svz6nvb.2
title: Data for Tiddy et al. 2021 Outplanting of branching Acropora enhances recolonization of a fish species and protects massive corals from predation

description: Data for the publication: Tiddy, I. C., Kaullysing, D., Bailey, D. M., Chummun, P. K., Killen, S. S., Le Vin, A., & Bhagooli, R. (2021). Outplanting of branching Acropora enhances recolonization of a fish species and protects massive corals from predation. Coral Reefs, 1-13. ABSTRACT: Damselfish of the genus Stegastes inhabit territories and cultivate algal gardens on branching corals of the genus Acropora, aggressively protecting their territories from other fish and preventing predation upon corals within the territory. This behaviour has important ecological impacts and could also be useful in reducing predation on outplanted corals during reef restoration efforts. However, the degree of protection from predators may depend on the ability of Stegastes spp. to recolonise outplanted or newly established coral colonies. Protection of bleaching-resilient massive corals within territories may be of particular importance due to the role of these corals in maintaining coral cover following bleaching events. This study examined whether the presence of Stegastes spp. reduces predation on the massive bleaching-resilient coral Porites lutea in the Mauritian lagoon, and whether Stegastes spp. readily colonise outplanted branching coral fragments and provide adjacent massive corals with indirect protection from predation. Predation levels on wild-occurring and outplanted P. lutea within and outside Stegastes spp. territories were measured. In addition, Acropora muricata branches were outplanted adjacent to wild P. lutea colonies outside Stegastes spp. territories, and recolonisation of these outplants by Stegastes spp. and the impacts of recolonisation on predation were monitored. Both wild and outplanted P. lutea colonies within Stegastes spp. territories sustained less predation damage compared to colonies outside territories. Stegastes spp. recolonized outplanted A. muricata colonies within six months of outplanting, and in doing so returned predation protection to adjacent P. lutea colonies. The ability of Stegastes spp. to colonise outplanted corals and provide indirect protection to adjacent massive bleaching-resilient corals may inform coral outplanting efforts in systems where Stegastes spp. are common. Encouraging Stegastes spp. recolonisation may help to reduce predation damage to corals within territories and potentially improve the success of rehabilitation efforts.
DOI: 10.17632/bdptcrjgbg.1
title: Data for: Spatial genetic structure of a keystone long‑lived semiarid shrub: historical efects prevail but do not cancel the impact of recent severe habitat loss on genetic diversity

description: This is the data corresponding to the paper: González-Robles, A., Manzaneda, A. J., Salido, T., Valera, F., García, C., Fernández-Ocaña, A. M., & Rey, P. J. (2020). Spatial genetic structure of a keystone long-lived semiarid shrub: historical effects prevail but do not cancel the impact of recent severe habitat loss on genetic diversity. Conservation Genetics, 21(5), 853-867. (doi: https://doi.org/10.1007/s10592-020-01291-5) . For study design and sampling methods, please see the paper or contact with the corresponding author.
DOI: 10.17632/3752zv629m.1
title: Data and results from: "De novo spatiotemporal modelling of cell-type signatures in the developmental human heart"

description: This repository contains data used and results produced in the manuscript: Sergio Marco Salas, Xiao Yuan, Christer Sylven, Mats Nilsson, Carolina Wählby, Gabriele Partel. "De novo spatiotemporal modelling of cell-type signatures in the developmental human heart" In situ sequencing [1] and scRNA-seq data [2] generated by Asp et al. [3] were downloaded and redistributed under CC BY 4.0 license. [1] Wu, Chenglin; Qian, Xiaoyan; Nilsson, Mats (2019): ISS data in "A spatiotemporal organ-wide gene expression and cell atlas of the developing human heart". figshare. Dataset. https://doi.org/10.6084/m9.figshare.10058048.v1 [2] Asp, Michaela (2021), “Developmental heart - filtered and unfiltered count matrices and meta tables”, Mendeley Data, V2, doi: 10.17632/mbvhhf8m62.2 [3] Asp, M., Giacomello, S., Larsson, L., Wu, C., Fürth, D., Qian, X., ... & Lundeberg, J. (2019). A spatiotemporal organ-wide gene expression and cell atlas of the developing human heart. Cell, 179(7), 1647-1660.
DOI: 10.17632/gtnmrbtmt4.3
title: Voluntary alcohol binge-drinking in adolescent C57Bl6 mice induces delayed appearance of behavioral defects in both males and females

description: Linked to https://doi.org/10.1101/2020.08.11.245878 Adolescence is a developmental period characterized by significant changes in brain architecture and behavior. The immaturity of the adolescent brain is associated with heightened vulnerability to exogenous agents, including alcohol. Alcohol is the most consumed drug among teenagers, and binge-drinking during adolescence is a major public health concern. Studies have suggested that adolescent alcohol exposure may interfere with the maturation of frontal brain regions and lead to long-lasting behavioral consequences. In this study, by using a slightly modified version of the Drinking in the Dark paradigm, adolescent C57Bl6 mice reach high blood alcohol concentration after voluntary binge-drinking. In order to assess short- and long-term consequences of AAE, a battery of behavioral tests was performed during late adolescence and during adulthood. We showed that AAE had no short-term effect on young mice behavior but rather increased anxiety- and depressive-like behaviors, as well as alcohol consumption during adulthood. Moreover, alcohol binge-drinking during adolescence dramatically decreased recognition memory performances and behavioral flexibility in both adult males and females. Furthermore, we showed that voluntary consumption of alcohol during adolescence did not trigger any major activation of the innate immune system in the prefrontal cortex. Together, our data suggest that voluntary alcohol binge-drinking in adolescent mice induces a delayed appearance of behavioral impairments in adulthood.
DOI: 10.17632/72cdzcrgpw.1
title: Data for Silver nanowire synthesis analyzing NaCl, CuCl2, and NaBr as halide salt with additional thermal, acid, and solvent post-treatments

description: Data concerning the experiment publish as Silver nanowire synthesis analyzing NaCl, CuCl2, and NaBr as halide salt with additional thermal, acid, and solvent post-treatments for transparent and flexible electrode applications.
DOI: 10.17632/cx3byrjx7b.1
title: Building air quality and pandemic risk simulation

description: Building air quality and pandemic risk simulation