cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17707817.v1
title: Supplementary_data_files_Isognomon_project.zip

description: These supplementary data cover tables, figures and data sets used to generate, annotate and phylogenetically place the mitochondrial genome of the pterioid pearl oyster Isognomon nucleus.<br>This paper is UNDER REVIEW and the files have NOT been subjected to peer-review. We maintain the right to change these files and their contents at any time during the peer review process.<br>The manuscript and the data files were submitted to Journal of Molluscan Studies 12.31.2021.
DOI: 10.35078/tp4b5q
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Uberaba | Município: Tupaciguara

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.5281/zenodo.7560665
title: Influence of viscous lubricant on nucleation and propagation of frictional ruptures.

description: Raw data used for the study of "Influence of viscous lubricant on nucleation and propagation of frictional ruptures." Data includes: high frequency strain gauges measurements, Acceleration measurements, Macroscopic load acquisition (load cells), and photoelasticity measurements.
DOI: 10.21227/b5bf-g097
title: Dynamic Planning of Active Distribution Network’s Wire and Non-wire Alternatives Considering Ancillary Services Market Participation

description: This data provides the simulation parameters and the optimal results of the comprehensive active distribution network (ADN) expansion planning model that includes both wire alternatives (WAs) and nonwire alternatives (NWAs). The primary motivation is to find the optimal sizing and siting of NWAs while considering WAs such that the ADN’s dynamically growing electrical load and electrical vehicle (EV) demand are met while maintaining network limits. Given the flexibility of NWA resources, they can provide the support needed to the ADN (e.g., congestion relief and voltage support) while providing ancillary services (ASs) to the grid. The proposed model is posed as a mixed-integer linear program to maximize the overall profits of the distribution system operator (DSO). WAs considered include adding/upgrading lines and upgrading the substation by installing transformers, while NWAs include sizing and siting of distributed renewable energy sources (RESs), thermal generators (TGs), and battery energy storage systems (BESSs) with considering EV charging stations (EVCSs) supply the EVs. Simulation results demonstrate the financial benefits of simultaneously considering WAs and NWAs. They also verify the feasibility of having the DSO participate in the ASs market utilizing its flexible resources. To further assess the proposed model characteristics, additional cases and sensitivity analyses are conducted.
DOI: 10.5281/zenodo.7560663
title: Influence of viscous lubricant on nucleation and propagation of frictional ruptures.

description: Raw data used for the study of "Influence of viscous lubricant on nucleation and propagation of frictional ruptures." Data includes: high frequency strain gauges measurements, Acceleration measurements, Macroscopic load acquisition (load cells), and photoelasticity measurements.
DOI: 10.6084/m9.figshare.20731855
title: Replication Package for Sustainability is Stratified: Toward a Better Theory of Sustainable Software Engineering

description: This replication pacakge includes: the complete list of primary studies; the data extraction spreadsheet; i.e., the complete dataset a Jupyter notebook containing our complete analysis scripts a pdf copy of the (3)
DOI: 10.57703/ce-vrcd9
title: Contact Mechanics Challenge

description: Topography used in the contact mechanics challenge : http://www.lmp.uni-saarland.de/index.php/research-topics/contact-mechanics-challenge-announcement/
DOI: 10.48577/jpl.f2k8os
title: Diurnal and Seasonal Variations of Aerosol Optical Depth Observed by MEDA/TIRS at Jezero Crater, Mars

description: The two upward-looking Thermal InfraRed Sensor (TIRS) channels from the Mars Environmental Dynamics Analyzer (MEDA) instrument suite on-board the Perseverance rover enable the retrieval of total aerosol optical depth (dust plus water ice cloud) above the rover for all observations when TIRS is taken. Because TIRS observes in the thermal infrared, the retrievals are possible during both the day and night and thus, they provide an excellent way to monitor both the diurnal and seasonal variations of aerosols above Jezero Crater. A retrieval algorithm has been developed for this purpose and here we describe that algorithm along with our results for the first 400 sols of the Perseverance mission covering nearly the entire aphelion season as well as a regional dust storm and the beginning of the perihelion season. We find systematic diurnal variations in aerosol optical depth that can be associated with dust and water ice cloud, as well as a clear change from a cloud-filled aphelion season to a perihelion season where dust is the dominant aerosol. A comparison of retrieved optical depths between TIRS and the SkyCam camera that is also part of MEDA indicates evidence of possible diurnal variations in cloud height or particle size.
DOI: 10.5281/zenodo.7566332
title: Truncated Exponential Sampling Dataset

description: The development and maintenance of this dataset has been supported in part by Laboratory Directed Research and Development Early Career Research Funding of Los Alamos National Laboratory (LANL) under project number 20210662ECR. LANL is operated by Triad National Security, LLC, for the National Nuclear Security Administration of U.S. Department of Energy (Contract No. 89233218CNA000001). We also acknowledge support by the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences, under Award Number DESC0022311.
DOI: 10.5281/zenodo.7566331
title: Truncated Exponential Sampling Dataset

description: The development and maintenance of this dataset has been supported in part by Laboratory Directed Research and Development Early Career Research Funding of Los Alamos National Laboratory (LANL) under project number 20210662ECR. LANL is operated by Triad National Security, LLC, for the National Nuclear Security Administration of U.S. Department of Energy (Contract No. 89233218CNA000001). We also acknowledge support by the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences, under Award Number DESC0022311.
DOI: 10.6084/m9.figshare.21948644
title: Filling gaps in the phylogeny of Amauroderma s. lat. (Polyporales, Ganodermataceae)

description: FcC_supermatrix.nexus contains: DNA aligment from 227 specimens of Ganodermataceae. Data was aligned using MAFFT and then manually inspected. Data contain: ITS (1-670), LSU (671-1556), RPB1 exons (1557-2096), RPB1 introns (2097-2563), RPB2 exons (2564-3564), RPB2 introns (3565-3625), TEF1-alpha exons (3626-4550), TEF1-alpha introns (4551-4781). <br> infile.nex.con.tre contains: Phylogenetic tree (Bayesian inference) performed in MrBayes. <br> combinada.nexus.contree contains: Phylogenetic tree (Maximum likelihood) performed in IQ-Tree. <br> For full methodological details see Peres et al. (-) Filling gaps in the phylogeny of Amauroderma s. lat. (Polyporales, Ganodermataceae).
DOI: 10.6084/m9.figshare.21948644.v1
title: Filling gaps in the phylogeny of Amauroderma s. lat. (Polyporales, Ganodermataceae)

description: FcC_supermatrix.nexus contains: DNA aligment from 227 specimens of Ganodermataceae. Data was aligned using MAFFT and then manually inspected. Data contain: ITS (1-670), LSU (671-1556), RPB1 exons (1557-2096), RPB1 introns (2097-2563), RPB2 exons (2564-3564), RPB2 introns (3565-3625), TEF1-alpha exons (3626-4550), TEF1-alpha introns (4551-4781). <br> infile.nex.con.tre contains: Phylogenetic tree (Bayesian inference) performed in MrBayes. <br> combinada.nexus.contree contains: Phylogenetic tree (Maximum likelihood) performed in IQ-Tree. <br> For full methodological details see Peres et al. (-) Filling gaps in the phylogeny of Amauroderma s. lat. (Polyporales, Ganodermataceae).
DOI: 10.5281/zenodo.7046056
title: On the benefits of self-taught learning for brain decoding - Data

description: Here are stored the data necessary to reproduce the full analysis of the paper "On the benefits of self-taught learning for brain decoding". We study the benefits of using a large public neuroimaging database composed of fMRI statistic maps, in a self-taught learning framework, for improving brain decoding on new tasks. First, we leverage the NeuroVault database to train, on a selection of relevant statistic maps, a convolutional autoencoder to reconstruct these maps. Then, we use this trained encoder to initialize a supervised convolutional neural network to classify tasks or cognitive processes of unseen statistic maps from large collections of the NeuroVault database. We show that such a self-taught learning process always improves the performance of the classifiers but the magnitude of the benefits strongly depends on the number of data available both for pre-training and finetuning the models and on the complexity of the targeted downstream task.
DOI: 10.35078/xr6uyl
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Uberaba | Município: Tiros

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.5281/zenodo.7118642
title: Nonlinear Reconstruction for Operator Learning of PDEs with Discontinuities

description: Data for the benchmarks problems of the paper "Nonlinear Reconstruction for Operator Learning of PDEs with Discontinuities"
DOI: 10.5281/zenodo.7115598
title: Nonlinear Reconstruction for Operator Learning of PDEs with Discontinuities

description: Data for the benchmarks problems of the paper "Nonlinear Reconstruction for Operator Learning of PDEs with Discontinuities"
DOI: 10.35078/e5liut
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Uberaba | Município: Tapira

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.3886/e169201
title: Data and Code for: "Self-Reporting Race in Small Business Loans: A Game-Theoretic Analysis of Evidence from PPP Loans in Durham, NC"

description: This paper explores the game-theoretic channels of self-reporting race in small business loan applications. Using data from the Paycheck Protection Program (PPP), which was implemented to help small businesses during the Covid-19 pandemic, and hand-collected race information, we find that small business owners that reported their race received less funding across all races, providing evidence of a penalty for self-reporting race. Self-reported black owners fared the worst compared to the unreported race subsample. These findings are consistent with a prisoner dilemma theoretical framework, in which all participants are better off by not self-reporting race.<br>
DOI: 10.3886/e169201v1
title: Data and Code for: "Self-Reporting Race in Small Business Loans: A Game-Theoretic Analysis of Evidence from PPP Loans in Durham, NC"

description: This paper explores the game-theoretic channels of self-reporting race in small business loan applications. Using data from the Paycheck Protection Program (PPP), which was implemented to help small businesses during the Covid-19 pandemic, and hand-collected race information, we find that small business owners that reported their race received less funding across all races, providing evidence of a penalty for self-reporting race. Self-reported black owners fared the worst compared to the unreported race subsample. These findings are consistent with a prisoner dilemma theoretical framework, in which all participants are better off by not self-reporting race.<br>
DOI: 10.6084/m9.figshare.21829905.v6
title: Datasets for single-cell-resolution spatial mapping by SC2Spa

description: <strong>Title</strong><br> Datasets for high resolution spatial mapping for SC2Spa<br> <strong>Author(s)</strong><br> Linbu Liao<br> <strong>Categories</strong><br> Bioinformatic methods development<br> <strong>Item type</strong><br> dataset<br> <strong>Keyword(s)</strong><br> Spatial transcriptomics, Spatial inference <br> <strong>File description</strong><br> AdataMH1.h5ad is the processed mouse hippocampus spatial transcriptomics data file of puck_200115_08 from Slide-seqV2 paper[1]. AMB_HC.h5ad is a processed mouse hippocampus scRNA-seq data file[2]. The datasets are saved in Anndata format. ssHippo_RCTD.csv is the annotation for the AdataMH1.h5ad file by RCTD[3]. <br> WDs_T2.csv includes the Wasserstain distance of genes between the scRNA-seq dataset[2] and the mouse hippocampus Slide-seqV2[1] dataset. SI_T2_WD.h5 is the traned model for mapping mouse hippocampus cells to space. The model is trained using genes selected according to Wasserstain distance. SI_T2.h5 is the spatial inference model trained on all shared genes between two datasets. <br> AdataMH2.h5ad is the processed mouse hippocampus spatial transcriptomics data file of puck_191204_01 from the Slide-seqV2 paper[1]. slideSeq_Puck190926_03_RCTD.csv is the annotation file for AdataEmbryo1.h5ad. AdataEmbryo1.h5ad is preprocessed file of puck_190926_03 (a mouse emrbyo Slide-seqV2[1] dataset). C2L.zip is the cell2location[4] data used in the analysis of SC2Spa manuscript. The datasets were used for the spatial mapping of SC2Spa. <br> <strong>Repositories</strong> The github website of SC2Spa: https://github.com/linbuliao/SC2Spa The github repository for SC2Spa analysis: https://github.com/linbuliao/SC2Spa_Notebooks <strong>Documentation</strong> The Read the Docs website of SC2Spa: https://sc2spa.readthedocs.io/en/latest/ <br> <strong>References</strong> [1] Stickels RR, Murray E, Kumar P, Li J, Marshall JL, Di Bella DJ, Arlotta P, Macosko EZ, Chen F: <strong>Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2.</strong> <em>Nature Biotechnology</em> 2020. [2] Saunders A, Macosko EZ, Wysoker A, Goldman M, Krienen FM, de Rivera H, Bien E, Baum M, Bortolin L, Wang SY, et al: <strong>Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain.</strong> <em>Cell</em> 2018, <strong>174:</strong>1015-+. [3] Cable DM, Murray E, Zou LS, Goeva A, Macosko EZ, Chen F, Irizarry RA: <strong>Robust decomposition of cell type mixtures in spatial transcriptomics. </strong>Nat Biotechnol 2021. [4] Kleshchevnikov V, Shmatko A, Dann E, Aivazidis A, King HW, Li T, Elmentaite R, Lomakin A, Kedlian V, Gayoso A, et al: <strong>Cell2location maps fine-grained cell types in spatial transcriptomics.</strong> <em>Nat Biotechnol</em> 2022, <strong>40:</strong>661-671. <br>
DOI: 10.5517/ccdc.csd.cc2ck054
title: CCDC 2191085: Experimental Crystal Structure Determination

description: Related Article: Kariyemu Aihaiti, Jun Li, Nan-nan Xu, Dan Tang, Haji Akber Aisa|2023|Fitoterapia|165|105432|doi:10.1016/j.fitote.2023.105432
description: Related Article: Aihaiti Kariyemu|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21950465
title: A Dynamic Approach to Control for Cohort Differences in Maturation Speed Using Accelerated Longitudinal Designs

description: Accelerated longitudinal designs (ALD) allow studying developmental processes usually spanning multiple years in a much shorter time framework by including participants from different age cohorts, which are assumed to share the same population parameters. However, different cohorts may have been exposed to dissimilar contextual factors, resulting in different developmental trajectories. If such differences are not accounted for, the generating process will not be adequately characterized. In this paper, we propose a continuous-time latent change score model as an approach to capture cohort differences affecting the speed of maturation of psychological processes in ALDs. This approach fills an important gap in the literature because, until now, no method existed for this goal. Using a Monte-Carlo simulation study, we show that the proposed model detects cohort differences adequately, regardless of their size in the population. Our proposed model can help developmental researchers control for cohort effects in the context of ALDs.
DOI: 10.6084/m9.figshare.21950465.v1
title: A Dynamic Approach to Control for Cohort Differences in Maturation Speed Using Accelerated Longitudinal Designs

description: Accelerated longitudinal designs (ALD) allow studying developmental processes usually spanning multiple years in a much shorter time framework by including participants from different age cohorts, which are assumed to share the same population parameters. However, different cohorts may have been exposed to dissimilar contextual factors, resulting in different developmental trajectories. If such differences are not accounted for, the generating process will not be adequately characterized. In this paper, we propose a continuous-time latent change score model as an approach to capture cohort differences affecting the speed of maturation of psychological processes in ALDs. This approach fills an important gap in the literature because, until now, no method existed for this goal. Using a Monte-Carlo simulation study, we show that the proposed model detects cohort differences adequately, regardless of their size in the population. Our proposed model can help developmental researchers control for cohort effects in the context of ALDs.
DOI: 10.5517/ccdc.csd.cc2cp8v6
title: CCDC 2195198: Experimental Crystal Structure Determination

description: Related Article: Alice Jane McEllin, Christopher A. Goult, Adrian C. Whitwood, Jason M. Lynam, Duncan W. Bruce|2023|Dalton Trans.|52|872|doi:10.1039/D2DT04114F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cp8w7
title: CCDC 2195199: Experimental Crystal Structure Determination

description: Related Article: Alice Jane McEllin, Christopher A. Goult, Adrian C. Whitwood, Jason M. Lynam, Duncan W. Bruce|2023|Dalton Trans.|52|872|doi:10.1039/D2DT04114F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cp8x8
title: CCDC 2195200: Experimental Crystal Structure Determination

description: Related Article: Alice Jane McEllin, Christopher A. Goult, Adrian C. Whitwood, Jason M. Lynam, Duncan W. Bruce|2023|Dalton Trans.|52|872|doi:10.1039/D2DT04114F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cpf6q
title: CCDC 2195333: Experimental Crystal Structure Determination

description: Related Article: Laura E. English, Thomas M. Horsley Downie, Catherine L. Lyall, Mary F. Mahon, Claire L. McMullin, Samuel E. Neale, Carla M. Saunders, David J. Liptrot|2023|Chem.Commun.|59|1074|doi:10.1039/D2CC04742J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cpf7r
title: CCDC 2195334: Experimental Crystal Structure Determination

description: Related Article: Laura E. English, Thomas M. Horsley Downie, Catherine L. Lyall, Mary F. Mahon, Claire L. McMullin, Samuel E. Neale, Carla M. Saunders, David J. Liptrot|2023|Chem.Commun.|59|1074|doi:10.1039/D2CC04742J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.