cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6600530
title: Additional File 2:

description: Thirty-six scatterplot diagrams of gene pairwise correlation (RAR 1443 kb)
DOI: 10.6084/m9.figshare.6600530.v1
title: Additional File 2:

description: Thirty-six scatterplot diagrams of gene pairwise correlation (RAR 1443 kb)
DOI: 10.6084/m9.figshare.10270556
title: MOESM6 of Integrated mRNA and small RNA sequencing reveals microRNA regulatory network associated with internode elongation in sugarcane (Saccharum officinarum L.)

description: Additional file 6. miRNA target predictions.
DOI: 10.6084/m9.figshare.10270556.v1
title: MOESM6 of Integrated mRNA and small RNA sequencing reveals microRNA regulatory network associated with internode elongation in sugarcane (Saccharum officinarum L.)

description: Additional file 6. miRNA target predictions.
DOI: 10.6084/m9.figshare.6600545
title: Additional File 3:

description: All DEGs list (XLSX 1713 kb)
DOI: 10.6084/m9.figshare.6600545.v1
title: Additional File 3:

description: All DEGs list (XLSX 1713 kb)
DOI: 10.6084/m9.figshare.10270562
title: MOESM7 of Integrated mRNA and small RNA sequencing reveals microRNA regulatory network associated with internode elongation in sugarcane (Saccharum officinarum L.)

description: Additional file 7. The differentially expressed mRNA and miRNA pairs in “zeatin biosynthesis”, “nitrogen metabolism” and “plant hormone signal transduction” pathways.
DOI: 10.6084/m9.figshare.10270562.v1
title: MOESM7 of Integrated mRNA and small RNA sequencing reveals microRNA regulatory network associated with internode elongation in sugarcane (Saccharum officinarum L.)

description: Additional file 7. The differentially expressed mRNA and miRNA pairs in “zeatin biosynthesis”, “nitrogen metabolism” and “plant hormone signal transduction” pathways.
DOI: 10.6084/m9.figshare.10270568
title: MOESM8 of Integrated mRNA and small RNA sequencing reveals microRNA regulatory network associated with internode elongation in sugarcane (Saccharum officinarum L.)

description: Additional file 8. Primers used in this study.
DOI: 10.6084/m9.figshare.10270568.v1
title: MOESM8 of Integrated mRNA and small RNA sequencing reveals microRNA regulatory network associated with internode elongation in sugarcane (Saccharum officinarum L.)

description: Additional file 8. Primers used in this study.
DOI: 10.6084/m9.figshare.6600554
title: Additional file 2: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

description: Table S1. Frequency of different SSR repeat motifs. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6600554.v1
title: Additional file 2: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

description: Table S1. Frequency of different SSR repeat motifs. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.23778218
title: The importance of insect pest biocontrol for maize production: an expert survey

description: Maize is the most important staple crop in the world; 1.15 billion tons were produced in 2019. Insect herbivores cause significant damage for maize production, and as a result, global pesticide use has increased over the last 20 years causing severe environmental degradation and negative impacts on human health. Today, there is a trend toward including more sustainable management practices that are less harmful to biodiversity and human health. One such a practice is the use of natural enemies to regulate pest populations using conservation biocontrol or introduction of biocontrol agents. These practices have been in place for several decades in different cultivation systems and regions throughout the world, however; information about the effects of more sustainable management practices on maize production is scarce. We conducted an expert assessment to evaluate whether there are any general trends or consensus about the importance of biocontrol for maize production globally. We compiled information from 70 experts from 28 different countries using an online survey. Of those surveyed, 91% of experts agreed that biocontrol was important for maize production regardless the type of maize they study, the final harvest destination or crop use, or management regime. Using the information obtained, we identify several opportunities for engaging with farmers in order to use biocontrol as a tool toward agricultural sustainability.
DOI: 10.6084/m9.figshare.23778218.v1
title: The importance of insect pest biocontrol for maize production: an expert survey

description: Maize is the most important staple crop in the world; 1.15 billion tons were produced in 2019. Insect herbivores cause significant damage for maize production, and as a result, global pesticide use has increased over the last 20 years causing severe environmental degradation and negative impacts on human health. Today, there is a trend toward including more sustainable management practices that are less harmful to biodiversity and human health. One such a practice is the use of natural enemies to regulate pest populations using conservation biocontrol or introduction of biocontrol agents. These practices have been in place for several decades in different cultivation systems and regions throughout the world, however; information about the effects of more sustainable management practices on maize production is scarce. We conducted an expert assessment to evaluate whether there are any general trends or consensus about the importance of biocontrol for maize production globally. We compiled information from 70 experts from 28 different countries using an online survey. Of those surveyed, 91% of experts agreed that biocontrol was important for maize production regardless the type of maize they study, the final harvest destination or crop use, or management regime. Using the information obtained, we identify several opportunities for engaging with farmers in order to use biocontrol as a tool toward agricultural sustainability.
DOI: 10.6084/m9.figshare.23861193
title: Combination of observational and functional trait-based approaches in developing a polyculture design tool

description: Models of species composition in diversified cropping systems utilize mostly functional trait-based or observation-based approaches. We argue that a combination of these two approaches makes polyculture design tools more robust. We assessed quantity, quality, and complementarity of information from multiple sources for designing diversified cropping systems with vegetables and spice crops for cold temperate climate. Trait and observational data were integrated from: (i) two grower-oriented and one academic crop database, (ii) a survey of farmers practicing community-supported agriculture, and (iii) a systematic literature review on the use of spice crops in vegetable farming. Survey results reveal that the farmers were capable of achieving medium to good levels of their main goals, but failed to reach desired multifunctionality with their polycultures, which can be potentially improved with computational tools. None of the analyzed data sources provided a comprehensive dataset for all target crops and functional traits. However, source combination allowed for design from known crop companions (farmers survey and grower-oriented databases), to addressing specific pest problems (literature review), and increasing functional complementarity and facilitation by trait matching (academic and grower-oriented trait databases). Integrating information from different sources increased the number of crop combination options but also planning and management complexity.
DOI: 10.6084/m9.figshare.23861193.v1
title: Combination of observational and functional trait-based approaches in developing a polyculture design tool

description: Models of species composition in diversified cropping systems utilize mostly functional trait-based or observation-based approaches. We argue that a combination of these two approaches makes polyculture design tools more robust. We assessed quantity, quality, and complementarity of information from multiple sources for designing diversified cropping systems with vegetables and spice crops for cold temperate climate. Trait and observational data were integrated from: (i) two grower-oriented and one academic crop database, (ii) a survey of farmers practicing community-supported agriculture, and (iii) a systematic literature review on the use of spice crops in vegetable farming. Survey results reveal that the farmers were capable of achieving medium to good levels of their main goals, but failed to reach desired multifunctionality with their polycultures, which can be potentially improved with computational tools. None of the analyzed data sources provided a comprehensive dataset for all target crops and functional traits. However, source combination allowed for design from known crop companions (farmers survey and grower-oriented databases), to addressing specific pest problems (literature review), and increasing functional complementarity and facilitation by trait matching (academic and grower-oriented trait databases). Integrating information from different sources increased the number of crop combination options but also planning and management complexity.
DOI: 10.6084/m9.figshare.6600572
title: Additional file 3: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

description: Table S2. Frequency distribution of different SSR motifs. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6600572.v1
title: Additional file 3: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

description: Table S2. Frequency distribution of different SSR motifs. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6600575
title: Additional File 5:

description: KEGG enrichment results (XLSX 46 kb)
DOI: 10.6084/m9.figshare.6600575.v1
title: Additional File 5:

description: KEGG enrichment results (XLSX 46 kb)
DOI: 10.6084/m9.figshare.6600581
title: Additional file 1: of Chinese woodchucks with different susceptibility to WHV infection differ in their genetic background exemplified by cytochrome B and MHC-DRB molecules

description: Table S1. Basic information. Table S2. Primers used for PCR and RT-PCR. Table S3. The parameters of PCR reaction mix and the amplification cycles. Table S4. Distribution of cytochrome B alleles in Chinese woodchucks. Table S5. Distribution of MHC-DRB alleles in Chinese woodchucks. (ZIP 41 kb)
DOI: 10.6084/m9.figshare.6600581.v1
title: Additional file 1: of Chinese woodchucks with different susceptibility to WHV infection differ in their genetic background exemplified by cytochrome B and MHC-DRB molecules

description: Table S1. Basic information. Table S2. Primers used for PCR and RT-PCR. Table S3. The parameters of PCR reaction mix and the amplification cycles. Table S4. Distribution of cytochrome B alleles in Chinese woodchucks. Table S5. Distribution of MHC-DRB alleles in Chinese woodchucks. (ZIP 41 kb)
DOI: 10.6084/m9.figshare.21804938
title: Characterization of the complete chloroplast genome of <i>Firmiana hainanensis</i> (Malvaceae), an endemic and vulnerable tree species of China

description: <i>Firmiana hainanensis</i> Kosterm. is a commercially valuable endemic tree species in China and has long been considered a globally vulnerable species. We assembled and characterized the complete chloroplast genome of this species by using Illumina pair-end sequencing data. The total chloroplast genome size was 161,559 bp, including two inverted repeats (IRs) of 25,612 bp, separated by a large single copy (LSC) and a small single copy (SSC) regions of 90,057 and 20,277 bp, respectively. A total of 130 genes were identified, including 85 protein-coding genes, 37 <i>tRNA</i>, and eight <i>rRNA</i> genes. Phylogenetic analysis showed that <i>F. hainanensis</i> was the most basal species in the genus <i>Firmiana</i>. The chloroplast genome of this species will provide a theoretical basis to understand the taxa’s evolution further and is expected to contribute to its conservation efforts.
DOI: 10.6084/m9.figshare.21804938.v1
title: Characterization of the complete chloroplast genome of <i>Firmiana hainanensis</i> (Malvaceae), an endemic and vulnerable tree species of China

description: <i>Firmiana hainanensis</i> Kosterm. is a commercially valuable endemic tree species in China and has long been considered a globally vulnerable species. We assembled and characterized the complete chloroplast genome of this species by using Illumina pair-end sequencing data. The total chloroplast genome size was 161,559 bp, including two inverted repeats (IRs) of 25,612 bp, separated by a large single copy (LSC) and a small single copy (SSC) regions of 90,057 and 20,277 bp, respectively. A total of 130 genes were identified, including 85 protein-coding genes, 37 <i>tRNA</i>, and eight <i>rRNA</i> genes. Phylogenetic analysis showed that <i>F. hainanensis</i> was the most basal species in the genus <i>Firmiana</i>. The chloroplast genome of this species will provide a theoretical basis to understand the taxa’s evolution further and is expected to contribute to its conservation efforts.
DOI: 10.6084/m9.figshare.6600587
title: Additional file 4: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

description: Table S3. Type and number of repeat motifs. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6600587.v1
title: Additional file 4: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

description: Table S3. Type and number of repeat motifs. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6600596
title: Additional File 6:

description: Unigenes, ORF, FPKM, SNPs and primers of 8 selected genes (XLSX 48 kb)
DOI: 10.6084/m9.figshare.10270613
title: MOESM1 of Application of MALDI-TOF MS to rapid identification of anaerobic bacteria

description: Additional file 1. The details of 6685 strains.
DOI: 10.6084/m9.figshare.6600596.v1
title: Additional File 6:

description: Unigenes, ORF, FPKM, SNPs and primers of 8 selected genes (XLSX 48 kb)
DOI: 10.6084/m9.figshare.10270613.v1
title: MOESM1 of Application of MALDI-TOF MS to rapid identification of anaerobic bacteria

description: Additional file 1. The details of 6685 strains.
DOI: 10.6084/m9.figshare.14464917
title: Liquid Crystal Polarisation Converter Arrays Based on Microholes Patterned Hydrophobic Layers

description: In this study, a facile method was developed for the fabrication of liquid crystal (LC) polarisation converter arrays. To this end, arrays of LC droplets were first formed self-assembly by scribing LC onto microholes patterned hydrophobic layers, in which LC director was radially aligned in each microhole. This is because the special function of hydrophobic layer-amorphous fluoropolymer poly(butenyl vinyl) ether (also known as CYTOP), which aligns the nematic LC director perpendicular to the substrate surface. The twist-radially LC cells were assembled by combining these microholes-patterned layer with homogeneous polyimide (PI<sub>∥</sub>) substrate, which could change linearly polarised light to radially or azimuthally polarised light depending on the polarisation direction of the incident light. The obtained LC polarisation converter arrays were easy to fabricate with simple processing and patterned arrays over large areas. Furthermore, the CYTOP layers exhibited high transmittance in the visible light region combined with superior temperature resistant. In sum, the proposed LC polarisation converter arrays look promising for future applications in biological tissue analysis, particle trapping and accelerating, optical data storage, laser cutting and material processing.
DOI: 10.6084/m9.figshare.14464920
title: Output files(part15)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.14464917.v1
title: Liquid Crystal Polarisation Converter Arrays Based on Microholes Patterned Hydrophobic Layers

description: In this study, a facile method was developed for the fabrication of liquid crystal (LC) polarisation converter arrays. To this end, arrays of LC droplets were first formed self-assembly by scribing LC onto microholes patterned hydrophobic layers, in which LC director was radially aligned in each microhole. This is because the special function of hydrophobic layer-amorphous fluoropolymer poly(butenyl vinyl) ether (also known as CYTOP), which aligns the nematic LC director perpendicular to the substrate surface. The twist-radially LC cells were assembled by combining these microholes-patterned layer with homogeneous polyimide (PI<sub>∥</sub>) substrate, which could change linearly polarised light to radially or azimuthally polarised light depending on the polarisation direction of the incident light. The obtained LC polarisation converter arrays were easy to fabricate with simple processing and patterned arrays over large areas. Furthermore, the CYTOP layers exhibited high transmittance in the visible light region combined with superior temperature resistant. In sum, the proposed LC polarisation converter arrays look promising for future applications in biological tissue analysis, particle trapping and accelerating, optical data storage, laser cutting and material processing.
DOI: 10.6084/m9.figshare.14464920.v1
title: Output files(part15)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.6600602
title: Additional file 5: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

description: Table S4. Statistics of SSRs in different categories. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.14464923
title: Output files(part16)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.6600602.v1
title: Additional file 5: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

description: Table S4. Statistics of SSRs in different categories. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.14464923.v1
title: Output files(part16)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.6600605
title: Additional File 7:

description: Relative expression level of 8 selected genes (XLSX 70 kb)
DOI: 10.6084/m9.figshare.14464926
title: Output files(part17)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.6600605.v1
title: Additional File 7:

description: Relative expression level of 8 selected genes (XLSX 70 kb)
DOI: 10.6084/m9.figshare.14464926.v1
title: Output files(part17)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.6600614
title: Additional file 6: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

description: Table S5. Number of different types of SSR motifs in different LGs. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6600614.v1
title: Additional file 6: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

description: Table S5. Number of different types of SSR motifs in different LGs. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6600629
title: Additional file 7: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

description: Table S6. Information of new designed 101, 694 SSR primers, including information of the primer sequences, annealing temperature (Ta), repeat motifs, target size, linkage groups, and positions in genetic and physical maps of pear. (XLSX 10192Â kb)
DOI: 10.6084/m9.figshare.6600629.v1
title: Additional file 7: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

description: Table S6. Information of new designed 101, 694 SSR primers, including information of the primer sequences, annealing temperature (Ta), repeat motifs, target size, linkage groups, and positions in genetic and physical maps of pear. (XLSX 10192Â kb)
DOI: 10.6084/m9.figshare.6600638
title: Additional file 8: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

description: Table S7. Information of 534 SSR primers, including information of the primer sequences, annealing temperature (Tm), repeat motifs, target size, linkage groups, and positions in genetic and physical maps of pear. (XLSX 72Â kb)
DOI: 10.6084/m9.figshare.6600638.v1
title: Additional file 8: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

description: Table S7. Information of 534 SSR primers, including information of the primer sequences, annealing temperature (Tm), repeat motifs, target size, linkage groups, and positions in genetic and physical maps of pear. (XLSX 72Â kb)
DOI: 10.5281/zenodo.10670255
title: Middelburg_Karoo_1_Flux_and_Biomet_data

description: Eddy-covariance and biomet data from Karoo 1 site near Middelburg, Eastern Cape, South Africa, following Fluxnet naming convention. For details see 'metadata' an 'variables' files.
DOI: 10.5281/zenodo.10670256
title: Middelburg_Karoo_1_Flux_and_Biomet_data

description: Eddy-covariance and biomet data from Karoo 1 site near Middelburg, Eastern Cape, South Africa, following Fluxnet naming convention. For details see 'metadata' an 'variables' files.
DOI: 10.6084/m9.figshare.14464971
title: Output files(part18)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.10270670
title: MOESM4 of Identification of microRNAs regulated by tobacco curly shoot virus co-infection with its betasatellite in Nicotiana benthamiana

description: Additional file 4: Table S2. 42differentially-expressed novel miRNAs and 25 equally-expressed novel miRNAs with miRNAs in N. benthamiana.
DOI: 10.6084/m9.figshare.14464971.v1
title: Output files(part18)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.10270670.v1
title: MOESM4 of Identification of microRNAs regulated by tobacco curly shoot virus co-infection with its betasatellite in Nicotiana benthamiana

description: Additional file 4: Table S2. 42differentially-expressed novel miRNAs and 25 equally-expressed novel miRNAs with miRNAs in N. benthamiana.
DOI: 10.6084/m9.figshare.14464974
title: Output files(part19)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.14464974.v1
title: Output files(part19)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.12367775
title: Additional file 1 of Exome sequencing study revealed novel susceptibility loci in subarachnoid hemorrhage (SAH)

description: Additional file 1: Table S1. Sample background information. Table S2. Basic information of sequencing. Table S3. reads mapping statistics. Table S4. Variation distribution statistics. Table S5. Variation filtering threshold. Table S6. Known genes in SAH. Table S7. Interacted genes with known genes in SAH
DOI: 10.6084/m9.figshare.12367775.v1
title: Additional file 1 of Exome sequencing study revealed novel susceptibility loci in subarachnoid hemorrhage (SAH)

description: Additional file 1: Table S1. Sample background information. Table S2. Basic information of sequencing. Table S3. reads mapping statistics. Table S4. Variation distribution statistics. Table S5. Variation filtering threshold. Table S6. Known genes in SAH. Table S7. Interacted genes with known genes in SAH
DOI: 10.6084/m9.figshare.6600659
title: Additional file 9: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

description: Table S8. Information of 332 good SSR primers, including information of the primer sequences, annealing temperature (Tm), repeat motifs, target size. (XLSX 36Â kb)