cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14277546.v1
title: Effect of environmental parameters on squamate reptiles in an urban forest fragment in central Amazonia

description: ABSTRACT The increasing urbanization of the Amazonian biome has promoted the creation of several forest fragments surrounded by an urban matrix, but the relationship of animal assemblages to the urban environment, especially in forest fragments, is poorly known. Here we aimed to 1) determine the composition of the squamate fauna of the largest urban forest fragment from central Amazonia, in the Brazilian city of Manaus, and 2) evaluate the influence of environmental parameters on assemblage diversity. We sampled 10 standardized riparian plots through visual search in six surveys between 2008/09 and 2015, totaling 360 observer-hours. We found 15 species of lacertoids (lizards and amphisbaenians) and seven species of snakes through active search. After considering occasional encounters and search in museum collections, we recorded a total of 24 lacertoid and 22 snake species. Multiple regression models indicated that species richness and abundance of individuals increased with the distance from the edge of the fragment, while other structural parameters of the environment did not affect the assemblage. We conclude that this forest fragment 1) consists of a subset of the regional species pool, and 2) undergoes reduction of species richness and abundance of individuals from the center to the borders. This and additional urban forest fragments should be continually monitored in order to evaluate their long-term role in maintaining the tropical biodiversity.
DOI: 10.6084/m9.figshare.14277547
title: Distribution update, conservation status and color in life of the rare Amazonian snake, Eutrachelophis papilio Zaher and Prudente 2019 (Serpentes: Xenodontini)

description: ABSTRACT The rare Amazonian snake Eutrachelophis papilio is known from only five individuals, from four localities, belonging to its type-series, the more recent collected over 10 years ago. Here, we expand its distribution and describe its color in life for the first time. We also provide an estimate of its distribution area using the minimum convex polygon method and identify the values of anthropic pressure within its known distribution range with the Human Footprint Index. The new occurrence is located 291 km from the nearest known locality and its distribution is associated with pristine forests. Considering its rarity, and the absence of demographic and biological data, we suggest that the species should be classified as Data Deficient by IUCN criteria.
DOI: 10.6084/m9.figshare.14277547.v1
title: Distribution update, conservation status and color in life of the rare Amazonian snake, Eutrachelophis papilio Zaher and Prudente 2019 (Serpentes: Xenodontini)

description: ABSTRACT The rare Amazonian snake Eutrachelophis papilio is known from only five individuals, from four localities, belonging to its type-series, the more recent collected over 10 years ago. Here, we expand its distribution and describe its color in life for the first time. We also provide an estimate of its distribution area using the minimum convex polygon method and identify the values of anthropic pressure within its known distribution range with the Human Footprint Index. The new occurrence is located 291 km from the nearest known locality and its distribution is associated with pristine forests. Considering its rarity, and the absence of demographic and biological data, we suggest that the species should be classified as Data Deficient by IUCN criteria.
DOI: 10.6084/m9.figshare.14277543.v1
title: Assessment of TerraClass and MapBiomas data on legend and map agreement for the Brazilian Amazon biome

description: ABSTRACT Reliable environmental monitoring and evaluation require high-quality maps of land use and land cover. For the Amazon biome, the TerraClass and MapBiomas projects apply different methodologies to create these maps. We evaluated the agreement between land cover and land use maps generated by TerraClass and MapBiomas (Collections 2 and 3) for the Brazilian Amazon biome, from 2004 to 2014. Specifically, we: (1) described both project legends based on the LCCS (Land Cover Classification System); (2) analyzed the differences between their classes; and (3) compared the mapping differences among the Brazilian states that are totally or partially covered by the Amazon biome. We compared the classifications with a per-pixel approach and performed an evaluation based on agreement matrices. The overall agreement between the projects was 87.4% (TerraClass x MapBiomas 2) and 92.0% (TerraClass x MapBiomas 3). We analyzed methodological differences to explain the disagreements in class identification. We conclude that using these maps together without a properly adapted legend is not recommended for the analysis of land use and land cover change. Depending on the application, one mapping system may be more suitable than the other.
DOI: 10.6084/m9.figshare.14277550
title: Effect of dietary taurine supplementation on the growth and blood physiological parameters of juvenile pirarucu

description: ABSTRACT For some fish species, dietary taurine supplementation has been proven necessary in feeds with considerable utilization of vegetable proteins to substitute fishmeal. Pirarucu, Arapaima gigas feeds mainly on taurine-rich animal items in nature, therefore this study aimed to evaluate the effect of dietary taurine supplementation (0, 0.5, 1, 1.5 and 3%) on the growth and blood physiological parameters of juvenile pirarucu. A commercial feed was utilized as the basal diet for the experimental diets. Three hundred fish (20.8 ± 2.3 g) were randomly distributed in 15 tanks and fed for 28 days. At the end of the trial, dietary taurine supplementation did not affect fish growth, feed consumption and feed efficiency. The original amounts of taurine (0.18%) and methionine (1.13%) in the commercial feed (0% taurine diet) apparently sufficed to promote adequate pirarucu growth, with no variation noted in the main blood physiological parameters. Further studies to assess whether taurine is conditionally essential for the pirarucu fed methionine-deficient diets are needed to elucidate the functionality of this nutrient for the studied species.
DOI: 10.6084/m9.figshare.14277552.v1
title: New records of Leptospira spp. in wild marsupials and a rodent in the eastern Brazilian Amazon through PCR detection

description: ABSTRACT We analyzed the presence of Leptospira spp. in liver and kidney tissue of wild marsupials and rodents trapped in a periurban forest in the eastern Brazilian Amazon. We examined 25 individuals of four marsupial and seven rodent species for the presence of the 16S rRNA gene of Leptospira in the DNA extracted from 47 liver and kidney tissue samples using PCR. We detected positive samples in 12% (3/25) of the individuals, in kidney fragments of two marsupial species (Didelphis marsupialis and Marmosops pinheiroi) and in a liver fragment of one rodent species (Echimys chrysurus). These are the first records of Leptospira spp. in M. pinheiroi and E. chrysurus and it is the first molecular survey of marsupials and rodents in the Brazilian Amazon.
DOI: 10.6084/m9.figshare.14277550.v1
title: Effect of dietary taurine supplementation on the growth and blood physiological parameters of juvenile pirarucu

description: ABSTRACT For some fish species, dietary taurine supplementation has been proven necessary in feeds with considerable utilization of vegetable proteins to substitute fishmeal. Pirarucu, Arapaima gigas feeds mainly on taurine-rich animal items in nature, therefore this study aimed to evaluate the effect of dietary taurine supplementation (0, 0.5, 1, 1.5 and 3%) on the growth and blood physiological parameters of juvenile pirarucu. A commercial feed was utilized as the basal diet for the experimental diets. Three hundred fish (20.8 ± 2.3 g) were randomly distributed in 15 tanks and fed for 28 days. At the end of the trial, dietary taurine supplementation did not affect fish growth, feed consumption and feed efficiency. The original amounts of taurine (0.18%) and methionine (1.13%) in the commercial feed (0% taurine diet) apparently sufficed to promote adequate pirarucu growth, with no variation noted in the main blood physiological parameters. Further studies to assess whether taurine is conditionally essential for the pirarucu fed methionine-deficient diets are needed to elucidate the functionality of this nutrient for the studied species.
DOI: 10.6084/m9.figshare.14277551
title: Effect of density of fingerling and juvenile pirarucu during transportation on water quality and physiological parameters

description: ABSTRACT We assessed the effect of stocking density on physiological parameters (blood lactate, glucose, cortisol, hematocrit), water quality (temperature, dissolved oxygen, pH, unionized ammonia, carbon dioxide), and survival during the transportation of fingerling (24.5 ± 4.7 g) and juvenile (615.8 ± 122.2 g) pirarucu (Arapaima gigas) for six hours in plastic bags. The tested densities were 65, 80, 95, 110 and 125 g L-1 for fingerlings, and 50, 80, 110, 140 and 170 g L-1 for juveniles (three replicates each). Parameters were measured prior to and immediately after transportation, and at 24 and 96 hours recovery after transportation. No mortality was observed, except for fingerlings (&lt; 3%) at densities of 110 and 125 g L-1 during recovery. All the water quality parameters were significantly altered after the transportation of fingerlings and juveniles. Water temperature, dissolved oxygen, carbon dioxide and unionized ammonia increased, but pH decreased. Only carbon dioxide and unionized ammonia differed among densities. Cortisol levels did not increase over time, except for the juveniles at 170 g L-1, which still had high cortisol after 96 hours. Glucose significantly increased after transportation for all the treatments and returned to the initial values during the recovery period. Conversely, the lactate values were still high after 96 hours. Hematocrit was assessed only for juveniles and was significantly lower after transportation. We conclude that fingerling and juvenile pirarucu can be safely transported at densities up to 95 g L-1 and 140 g L-1, respectively.
DOI: 10.6084/m9.figshare.14277551.v1
title: Effect of density of fingerling and juvenile pirarucu during transportation on water quality and physiological parameters

description: ABSTRACT We assessed the effect of stocking density on physiological parameters (blood lactate, glucose, cortisol, hematocrit), water quality (temperature, dissolved oxygen, pH, unionized ammonia, carbon dioxide), and survival during the transportation of fingerling (24.5 ± 4.7 g) and juvenile (615.8 ± 122.2 g) pirarucu (Arapaima gigas) for six hours in plastic bags. The tested densities were 65, 80, 95, 110 and 125 g L-1 for fingerlings, and 50, 80, 110, 140 and 170 g L-1 for juveniles (three replicates each). Parameters were measured prior to and immediately after transportation, and at 24 and 96 hours recovery after transportation. No mortality was observed, except for fingerlings (&lt; 3%) at densities of 110 and 125 g L-1 during recovery. All the water quality parameters were significantly altered after the transportation of fingerlings and juveniles. Water temperature, dissolved oxygen, carbon dioxide and unionized ammonia increased, but pH decreased. Only carbon dioxide and unionized ammonia differed among densities. Cortisol levels did not increase over time, except for the juveniles at 170 g L-1, which still had high cortisol after 96 hours. Glucose significantly increased after transportation for all the treatments and returned to the initial values during the recovery period. Conversely, the lactate values were still high after 96 hours. Hematocrit was assessed only for juveniles and was significantly lower after transportation. We conclude that fingerling and juvenile pirarucu can be safely transported at densities up to 95 g L-1 and 140 g L-1, respectively.
DOI: 10.6084/m9.figshare.14277552
title: New records of Leptospira spp. in wild marsupials and a rodent in the eastern Brazilian Amazon through PCR detection

description: ABSTRACT We analyzed the presence of Leptospira spp. in liver and kidney tissue of wild marsupials and rodents trapped in a periurban forest in the eastern Brazilian Amazon. We examined 25 individuals of four marsupial and seven rodent species for the presence of the 16S rRNA gene of Leptospira in the DNA extracted from 47 liver and kidney tissue samples using PCR. We detected positive samples in 12% (3/25) of the individuals, in kidney fragments of two marsupial species (Didelphis marsupialis and Marmosops pinheiroi) and in a liver fragment of one rodent species (Echimys chrysurus). These are the first records of Leptospira spp. in M. pinheiroi and E. chrysurus and it is the first molecular survey of marsupials and rodents in the Brazilian Amazon.
DOI: 10.6084/m9.figshare.14277555
title: Litter decomposition and nutrient release dynamics of leaves and roots of the babassu palm in eastern Amazonia

description: ABSTRACT The ruderal babassu palm (Attalea speciosa) is expanding on large areas of degraded Amazon landscapes. Decomposition of leaves and roots is in the center of plant:soil interactions. We evaluated decomposition and nutrient concentrations of leaves and fine roots of babassu in comparison with two exotic reference species, Acacia mangium (slow degradability) and Leucaena leucocephala (fast degradability), in a 138-day litterbag assay carried out in secondary forest stands of different age and babassu abundance. We chose 4-mm over 2-mm mesh litterbags based on a pilot study. Babassu leaves degraded slower than leaves of A. mangium and L. leucocephala, and also had lower nitrogen, phosphorus and calcium concentrations in all stages of decomposition. By contrast, potassium concentrations in babassu leaves were higher than in both reference species at 0 and 50 days. Roots of all three species decomposed slower than leaves. Compared to the leaves, both biomass loss and nutrient concentrations differed less between babassu and reference-species roots, except for lower nitrogen concentration in babassu roots. Leaf-litter decomposition of all three species was significantly faster in old than in young secondary forest, suggesting an acceleration of decomposition along succession. Babassu leaves decomposed faster in old babassu-dominated than non-dominated secondary forest, pointing to the existence of specialized decomposer communities in babassu-dominated stands.
DOI: 10.6084/m9.figshare.14277555.v1
title: Litter decomposition and nutrient release dynamics of leaves and roots of the babassu palm in eastern Amazonia

description: ABSTRACT The ruderal babassu palm (Attalea speciosa) is expanding on large areas of degraded Amazon landscapes. Decomposition of leaves and roots is in the center of plant:soil interactions. We evaluated decomposition and nutrient concentrations of leaves and fine roots of babassu in comparison with two exotic reference species, Acacia mangium (slow degradability) and Leucaena leucocephala (fast degradability), in a 138-day litterbag assay carried out in secondary forest stands of different age and babassu abundance. We chose 4-mm over 2-mm mesh litterbags based on a pilot study. Babassu leaves degraded slower than leaves of A. mangium and L. leucocephala, and also had lower nitrogen, phosphorus and calcium concentrations in all stages of decomposition. By contrast, potassium concentrations in babassu leaves were higher than in both reference species at 0 and 50 days. Roots of all three species decomposed slower than leaves. Compared to the leaves, both biomass loss and nutrient concentrations differed less between babassu and reference-species roots, except for lower nitrogen concentration in babassu roots. Leaf-litter decomposition of all three species was significantly faster in old than in young secondary forest, suggesting an acceleration of decomposition along succession. Babassu leaves decomposed faster in old babassu-dominated than non-dominated secondary forest, pointing to the existence of specialized decomposer communities in babassu-dominated stands.
DOI: 10.6084/m9.figshare.14277558
title: Acute toxicity of a deltamethrin based pesticide (DBP) to the Neotropical electric fish Microsternarchus cf. bilineatus (Gymnotiformes)

description: ABSTRACT Deltamethrin is a pyrethroid insecticide widely used in pest control in Brazilian agriculture. The intensive and disordered use of this pesticide in the Amazon region can drive it into aquatic ecosystems in several ways, but mainly by runoff and leaching. The present study was conceived to determine the acute toxicity (LC50) of a deltamethrin based pesticide (DBP) and to characterize its effects on two biochemical biomarkers, glutathione-S-transferase (GST) and acetylcholinesterase (AChE), in tissues of the electric fish Microsternarchus cf. bilineatus. Fishes were exposed to concentrations of 1, 2, 3, 4 and 5 μg L-1 of DBP for up to 96 hours. For each treatment, the absolute activity of the enzymes GST (muscle and liver) and AChE (muscle and nervous tissue) were analyzed. The LC50-96 h for Microsternarchus cf. bilineatus was 2.15 μg L-1, the lowest concentration registered for an Amazonian fish species so far. None of the concentrations tested of this insecticide affected AChE activity for the exposure period tested. A significant increase in muscle GST activity was detected only for concentrations of 2 and 3 μg L-1.
DOI: 10.6084/m9.figshare.14277558.v1
title: Acute toxicity of a deltamethrin based pesticide (DBP) to the Neotropical electric fish Microsternarchus cf. bilineatus (Gymnotiformes)

description: ABSTRACT Deltamethrin is a pyrethroid insecticide widely used in pest control in Brazilian agriculture. The intensive and disordered use of this pesticide in the Amazon region can drive it into aquatic ecosystems in several ways, but mainly by runoff and leaching. The present study was conceived to determine the acute toxicity (LC50) of a deltamethrin based pesticide (DBP) and to characterize its effects on two biochemical biomarkers, glutathione-S-transferase (GST) and acetylcholinesterase (AChE), in tissues of the electric fish Microsternarchus cf. bilineatus. Fishes were exposed to concentrations of 1, 2, 3, 4 and 5 μg L-1 of DBP for up to 96 hours. For each treatment, the absolute activity of the enzymes GST (muscle and liver) and AChE (muscle and nervous tissue) were analyzed. The LC50-96 h for Microsternarchus cf. bilineatus was 2.15 μg L-1, the lowest concentration registered for an Amazonian fish species so far. None of the concentrations tested of this insecticide affected AChE activity for the exposure period tested. A significant increase in muscle GST activity was detected only for concentrations of 2 and 3 μg L-1.
DOI: 10.6084/m9.figshare.14277562
title: Evidence of mutagenic and lethal effects of herbicides on Amazonian frogs

description: ABSTRACT Amphibians are excellent bioindicators because they are sensitive to chemical pollution and can indicate ecosystem changes due to the presence of or exposure to chemical compounds. Here we report evidence of the impact of herbicides, including glyphosate, on amphibians in a locality in the central Brazilian Amazon and compare it with data from other biomes in Brazil. We observed malformations in three species of Leptodactylus and local extinctions of Scinax ruber and Rhinella marina from reproductive sites close to an area where herbicides had been applied. The observations in the Amazon are similar to reports from Brazil’s Atlantic forest on morphological anomalies and mortality in amphibians exposed to herbicides. We warn of the threat of expanding crops for the production of biofuels in the Amazon due to their cultivation being associated with agrochemicals, including glyphosate, posing a threat to the biodiversity of the Amazon biome.
DOI: 10.6084/m9.figshare.14277562.v1
title: Evidence of mutagenic and lethal effects of herbicides on Amazonian frogs

description: ABSTRACT Amphibians are excellent bioindicators because they are sensitive to chemical pollution and can indicate ecosystem changes due to the presence of or exposure to chemical compounds. Here we report evidence of the impact of herbicides, including glyphosate, on amphibians in a locality in the central Brazilian Amazon and compare it with data from other biomes in Brazil. We observed malformations in three species of Leptodactylus and local extinctions of Scinax ruber and Rhinella marina from reproductive sites close to an area where herbicides had been applied. The observations in the Amazon are similar to reports from Brazil’s Atlantic forest on morphological anomalies and mortality in amphibians exposed to herbicides. We warn of the threat of expanding crops for the production of biofuels in the Amazon due to their cultivation being associated with agrochemicals, including glyphosate, posing a threat to the biodiversity of the Amazon biome.
DOI: 10.6084/m9.figshare.14277560
title: Variation in environmental characteristics of waters among Amazon coast oyster culture units

description: ABSTRACT Oyster culture has benefited traditional coastal communities along the Amazon macrotidal mangrove coast of Pará state in Brazil since 2006. Currently, seven oyster culture units in five municipalities are expanding production, but with no environmental monitoring, which is important for the control of the impacts of oyster culture on waters as well as for oyster management and conservation. Seasonal variation in environmental characteristics of the water was evaluated at all oyster culture units in Pará, from September to November 2013 (dry season) and February to April 2014 (wet season), to generate baseline data to evaluate future impacts and aid strategic planning, such as diversifying seed production. Salinity, dissolved oxygen, pH, oxidation-reduction potential, depth, temperature, and chlorophyll-a concentration were measured during flooding and ebbing tides, and compared between seasons and among culture units using uni- and multivariate statistics. All variables were significantly higher in the dry season, except depth, which was significantly greater in the wet season. Mean salinity, which varied from 2.4 to 46, explained most of the variation among culture units in relation to season, sampling date within each season and tidal state. However, dissolved oxygen, pH and depth were also important. Oyster culture units in Pará may be suitable for sustainable harvesting of seed/spat from the wild (lower salinity and pH), or for on-growing (higher salinity, higher pH, and greater depth). Seasonal variation is sufficient to allow both activities at most units at appropriate times of the year, which would help increase oyster production in Pará.