cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19312256
title: Normal liver tissue proteome analysis

description: Liver tissue was homogenized and sonicated in the lysis buffer. Whole cell protein extract was reduced and alkylated and digested by trypsin. <br>Peptide mixture was analyzed on Q Exactive HFX mass spectrometer coupled to UHPLC chromatography system. Two dimensional fractionation of peptides included one more separation on Agilent 1200 Series RP chromatography in alkaline conditions with fractions collected and also analyzed by MS. The fractions were also analyzed by SRM SIS analysis to detect proteins encoded by the 18th human chromosome. The analysis was carried out at 6495 Triple Quad LC/MS system (Agilent). Stable isotope labelled peptides were used as internal standard.The Shotgun data was processed with MaxQuant software v1.6.3.4 by target/decoy method. Cleavage by trypsin, max number of missed cleavages - 2. Oxidation of M and Acetylation of protein N-term were set as variable modifications. Carbamidomethylaion was set as fixed modification.
DOI: 10.6084/m9.figshare.19312256.v1
title: Normal liver tissue proteome analysis

description: Liver tissue was homogenized and sonicated in the lysis buffer. Whole cell protein extract was reduced and alkylated and digested by trypsin. <br>Peptide mixture was analyzed on Q Exactive HFX mass spectrometer coupled to UHPLC chromatography system. Two dimensional fractionation of peptides included one more separation on Agilent 1200 Series RP chromatography in alkaline conditions with fractions collected and also analyzed by MS. The fractions were also analyzed by SRM SIS analysis to detect proteins encoded by the 18th human chromosome. The analysis was carried out at 6495 Triple Quad LC/MS system (Agilent). Stable isotope labelled peptides were used as internal standard.The Shotgun data was processed with MaxQuant software v1.6.3.4 by target/decoy method. Cleavage by trypsin, max number of missed cleavages - 2. Oxidation of M and Acetylation of protein N-term were set as variable modifications. Carbamidomethylaion was set as fixed modification.
DOI: 10.48370/ofd/uchldi/mbpimy
title: Rhizophagus cribratus.jpg

description: :unav
DOI: 10.48370/ofd/uchldi
title: Rhizophagus cribratus (Gyllenhal, 1827), C-577

description: Coleoptera collection
DOI: 10.6084/m9.figshare.19350395
title: Formation mechanisms and mechanical properties of anaerobic lagoon scum

description: This submission contains the physical properties measurement and raw data for yield stress measurement of muncipal sewage scum and sludge and Abattoir waste scum and sludge from the covered anaerobic lagoon.
DOI: 10.6084/m9.figshare.19350395.v1
title: Formation mechanisms and mechanical properties of anaerobic lagoon scum

description: This submission contains the physical properties measurement and raw data for yield stress measurement of muncipal sewage scum and sludge and Abattoir waste scum and sludge from the covered anaerobic lagoon.
DOI: 10.25345/c52v2cd5v
title: MassIVE Reanalysis RMSV000000586.2 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000079526/PXD000865 [9 out of 46], Uterus [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5z31ns18
title: MassIVE Reanalysis RMSV000000362.2 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000081607 Confetti, AspN-Chymotrypsin HCD [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5281/zenodo.6020399
title: Raw data accompanying "A supramolecular and liquid crystalline water‐based alignment medium based on azobenzene‐substituted 1,3,5‐benzenetricarboxamides"

description: Raw spectral data files for NMR, CD and UV/VIs measurements.
description: We are grateful to the Deutsche Forschungsgemeinschaft (DFG) for funding (grant TH 1115/11-1).
DOI: 10.5281/zenodo.6020398
title: Raw data accompanying "A supramolecular and liquid crystalline water‐based alignment medium based on azobenzene‐substituted 1,3,5‐benzenetricarboxamides"

description: Raw spectral data files for NMR, CD and UV/VIs measurements.
description: We are grateful to the Deutsche Forschungsgemeinschaft (DFG) for funding (grant TH 1115/11-1).
DOI: 10.25345/c5tb0xz61
title: MassIVE Reanalysis RMSV000000362.3 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000081607 Confetti, ArgC-GluC HCD [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5pk07516
title: MassIVE Reanalysis RMSV000000584.2 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000079514/PXD000561 Part 2 [64 out of 85], Urinary bladder [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5js9hb7w
title: MassIVE Reanalysis RMSV000000584.4 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000079514/PXD000561 [41 out of 41], Adrenal gland [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5f18sj32
title: MassIVE Reanalysis RMSV000000384.2 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000081563 HeLa proteome, HeLa_Trypsin_phospho_pH10, phospho selected [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c59882r0s
title: MassIVE Reanalysis RMSV000000584.3 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000079514/PXD000561 [1 out of 41], Rectum [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5517/ccdc.csd.cc298lls
title: CSD 2123425: Experimental Crystal Structure Determination

description: Related Article: Zhikang Chen, Kewang Zhang, Bei Zhang, Jun Zhang|2022|Dalton Trans.|51|4097|doi:10.1039/D2DT00009A
DOI: 10.5517/ccdc.csd.cc29h4fd
title: CCDC 2129713: Experimental Crystal Structure Determination

description: Related Article: A. P. Prakasham, Arkadi Vigalok, Andrei N. Vedernikov|2022|Organometallics|41|634|doi:10.1021/acs.organomet.1c00710
DOI: 10.5281/zenodo.6372218
title: Extensive Early Marine Seafloor Cementation in a Modern Epeiric Sea Induced by Seawater Properties and a Shallow Redox Boundary below the Seafloor

description: supplement information for Extensive Early Marine Seafloor Cementation in a Modern Epeiric Sea Induced by Seawater Properties and a Shallow Redox Boundary below the Seafloor
DOI: 10.25345/c55m6299r
title: MassIVE Reanalysis RMSV000000584.5 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000079514/PXD000561 Part 2 [71 out of 85], CD8 Tcells [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5281/zenodo.6372217
title: Extensive Early Marine Seafloor Cementation in a Modern Epeiric Sea Induced by Seawater Properties and a Shallow Redox Boundary below the Seafloor

description: supplement information for Extensive Early Marine Seafloor Cementation in a Modern Epeiric Sea Induced by Seawater Properties and a Shallow Redox Boundary below the Seafloor
DOI: 10.5517/ccdc.csd.cc29h4pn
title: CCDC 2129721: Experimental Crystal Structure Determination

description: Related Article: A. P. Prakasham, Arkadi Vigalok, Andrei N. Vedernikov|2022|Organometallics|41|634|doi:10.1021/acs.organomet.1c00710
DOI: 10.5517/ccdc.csd.cc29hzvn
title: CCDC 2130532: Experimental Crystal Structure Determination

description: Related Article: Erica Scarel, Ottavia Bellotto, Petr Rozhin, Slavko Kralj, Mariagrazia Tortora, Attilio V. Vargiu, Rita De Zorzi, Barbara Rossi, Silvia Marchesan|2022|Soft Matter|18|2129|doi:10.1039/D1SM01824H
DOI: 10.5517/ccdc.csd.cc29hzwp
title: CCDC 2130533: Experimental Crystal Structure Determination

description: Related Article: Erica Scarel, Ottavia Bellotto, Petr Rozhin, Slavko Kralj, Mariagrazia Tortora, Attilio V. Vargiu, Rita De Zorzi, Barbara Rossi, Silvia Marchesan|2022|Soft Matter|18|2129|doi:10.1039/D1SM01824H
DOI: 10.5517/ccdc.csd.cc297xk1
title: CCDC 2122773: Experimental Crystal Structure Determination

description: Related Article: Meng-Yuan Fu, Hao-Yu Wang, Hang-Ling Zhai, Qin-Yu Zhu, Jie Dai|2022|Inorg.Chem.|61|4024|doi:10.1021/acs.inorgchem.1c03779
DOI: 10.5517/ccdc.csd.cc29901p
title: CCDC 2123811: Experimental Crystal Structure Determination

description: Related Article: Xinyi Ma, Zhen Jing, Kunhong Li, Yian Chen, Dandan Li, Pengtao Ma, Jingping Wang, Jingyang Niu|2022|Inorg.Chem.|61|4056|doi:10.1021/acs.inorgchem.1c03835
DOI: 10.5517/ccdc.csd.cc28p8r0
title: CCDC 2105822: Experimental Crystal Structure Determination

description: Related Article: Yan-Lan Wu, Yong-Jiang Wang, Yan-Qiong Sun, Xin-Xiong Li, Shou-Tian Zheng|2022|Chem.Commun.|58|3322|doi:10.1039/D1CC06878D
DOI: 10.5517/ccdc.csd.cc28p8s1
title: CCDC 2105823: Experimental Crystal Structure Determination

description: Related Article: Yan-Lan Wu, Yong-Jiang Wang, Yan-Qiong Sun, Xin-Xiong Li, Shou-Tian Zheng|2022|Chem.Commun.|58|3322|doi:10.1039/D1CC06878D
DOI: 10.25345/c51v5bh5m
title: MassIVE Reanalysis RMSV000000586.3 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000079526/PXD000865 [26 out of 46], Testis [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5x34mv9f
title: MassIVE Reanalysis RMSV000000375.2 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080255/PXD000529 [5 out of 9] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5sb3x25q
title: MassIVE Reanalysis RMSV000000592.2 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000083508 29 tissues, ovary Trypsin_HCD_QExactiveplus [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.24396/ordar-101
title: Spinel targets

description: BSE and, when available, X-Ray maps of the objects targeted for the Schnuriger et al. (2022) study.
DOI: 10.18112/openneuro.ds002425.v1.0.2
title: The neural representation of visually evoked emotion is high-dimensional, categorical, and distributed across transmodal brain regions
DOI: 10.25345/c5nk3681z
title: MassIVE Reanalysis RMSV000000369.2 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080757/PXD002619 [14 out of 24] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5ht2gf8p
title: MassIVE Reanalysis RMSV000000379.2 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000088405 Quantitative PTM Maps of Human Pathologic Tau Identify Patient Heterogeneity and Define Critical Steps in Alzheimers Disease Progression - high/low molecular weight tau [Cohort: Alzheimers_First_Tau] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5d21rn5b
title: MassIVE Reanalysis RMSV000000362.4 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000081607 Confetti, GluC-Chymotrypsin-Trypsin HCD [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19390703
title: Supplementary Material for: Air Pollution and Weather Conditions Are Associated with Daily Outpatient Visits of Atopic Dermatitis in Shanghai, China

description: <b><i>Background:</i></b> Non-optimum weather conditions and air pollution have the potential to increase the risk of atopic dermatitis (AD), but the associations are rarely evaluated, especially in developing countries. <b><i>Objective:</i></b> To investigate the independent influence and interaction effects of meteorological factors and air pollutants on the onset of AD. <b><i>Methods:</i></b> Daily data on outpatient visits of AD were obtained from Shanghai Dermatology Hospital and comprised 34,633 patients during the period from January 2013 to December 2018. Meteorological conditions and air pollutant concentrations in Shanghai, China, during the 6-year period were collected. We applied the overdispersed generalized additive model and the distributed lag model to explore the short-term cumulative effects of environmental factors on AD. <b><i>Results:</i></b> AD symptoms were aggravated by extreme low temperature (1st percentile, 0.5°C) (RR = 1.32, 95% CI: 1.16–1.51) and per 10 unit decrease of humidity (RR = 1.10, 95% CI: 1.12–2.47). The increased concentration of air pollutants except ozone (O<sub>3</sub>) contributed to the increased risk of AD outpatients. A 10 μg/m<sup>3</sup> increase in sulfur dioxide (SO<sub>2</sub>) and nitrogen dioxide (NO<sub>2</sub>) were associated with 6.03% (95% CI: 2.29%, 9.91%), and 1.96% (95% CI: 0.46%, 3.48%) increase of AD outpatients. AD patients in the 8- to 17-year-old group were most susceptible to extreme low temperature, and patients in the 0- to 7-year-old group were most susceptible to air pollutants, including particulate matter (PM<sub>10</sub>), SO<sub>2</sub>, and NO<sub>2</sub>. Men were more sensitive to the effects of extreme low temperature than women, while women were more vulnerable to air pollutants. The adverse effects of SO<sub>2</sub> and NO<sub>2</sub> on AD can be enhanced significantly by the warm season or other pollutants. <b><i>Conclusion:</i></b> Exposure to a lower temperature, lower humidity, and higher levels of air pollutants is significantly associated with increased risks of AD incidence. These impacts were more pronounced in children less than 7 years old, women, and warm seasons.
DOI: 10.25345/c58c9r71x
title: MassIVE Reanalysis RMSV000000388.2 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000080701/PXD000612 [4 out of 27] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c54m91d81
title: MassIVE Reanalysis RMSV000000362.5 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000081607 Confetti, LysC-Chymotrypsin-Elastase CID [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c50v89m3d
title: MassIVE Reanalysis RMSV000000584.7 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000079514/PXD000561 Part 2 [49 out of 85], CD8 Tcells [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5w37kz8q
title: MassIVE Reanalysis RMSV000000370.2 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of MSV000082644 Proteomics, post-translational modifications, and integrative analyses reveal heterogeneity of molecular mechanisms within medulloblastoma subgroups [Mixture: Unfractionated_Phospho-tyrosine-enrichments_Plex01] [launched by cfca6e4ba8934e65aa11617b56091339]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.