cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3nbgfk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Annona glabra L.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196963-220831081235567/datasets/export for details.
DOI: 10.15468/dl.4purpt
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silene nocturna L.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 24 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0199260-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6u9hbh
title: Occurrence Download

description: A dataset containing 3297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myxine glutinosa Linnaeus, 1758",
 "Year 2000-2023"
 ]
}

 The dataset includes 3297 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245039-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rgggnt
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Labdia Walker, 1864",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196958-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.85kweb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Berberis candidula (C.K.Schneid.) C.K.Schneid.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196961-220831081235567/datasets/export for details.
DOI: 10.15468/dl.bjrjze
title: Occurrence Download

description: A dataset containing 294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Andropogon fastigiatus Sw."
 ]
}

 The dataset includes 294 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242439-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p95wvq
title: Occurrence Download

description: A dataset containing 13619 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lycorma delicatula (White, 1845)"
 ]
}

 The dataset includes 13619 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229908-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkbybm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drosophyllum lusitanicum (L.) Link",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0199266-220831081235567/datasets/export for details.
DOI: 10.15468/dl.5rqd4v
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vernonia friisii Mesfin"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196960-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jwwam2
title: Occurrence Download

description: A dataset containing 2126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lampetra fluviatilis (Linnaeus, 1758)",
 "Year 1901-1950"
 ]
}

 The dataset includes 2126 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245047-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w76kqm
title: Occurrence Download

description: A dataset containing 236869 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum nigrum L."
 ]
}

 The dataset includes 236869 records from 1379 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196927-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30122335
title: Supplementary material related to denitrifier completeness - Pold Saghaï Jones Hallin

description: Supplementary alignments and data for nitrous oxide reductase, and scripts for recreating figures in manuscript.<br>Genome_annotation_commands.txt contains the commands used for annotating genomes with original annotation tools.The hmmalign_nucmap_derep_assign.py script and hmmer_genome_as.sh scripts are used to search nt sequences for proteins using a reference amino acid alignment, and are described in the genome_annotation_commands.txt script.<br>Figure scripts are labeled according to figure in manuscript. With exception for MAG coverage data provided here ("TARA_MAGS_repOnly...."), all data are in supplementary file provided with manuscript. Figure1 script also contains code to generate gRodon figure 2a and supplementary figure 2. Supplementary figure 1 was generated in ITOL and does not have an R script associated with it.<br>The DenitCompletenessRawGenomeAnnotations.zip folder contains original annotations for genomes, labeled according to tool used.<br>bac120_r214_HQ_fuso corresponds to tree used in figure S1 as linked in source data filenosZ_2021.gpkg contains the graftM package used to search metagenomes and metatranscriptomes, including HMMs.
DOI: 10.6084/m9.figshare.30122335.v3
title: Supplementary material related to denitrifier completeness - Pold Saghaï Jones Hallin

description: Supplementary alignments and data for nitrous oxide reductase, and scripts for recreating figures in manuscript.<br>Genome_annotation_commands.txt contains the commands used for annotating genomes with original annotation tools.The hmmalign_nucmap_derep_assign.py script and hmmer_genome_as.sh scripts are used to search nt sequences for proteins using a reference amino acid alignment, and are described in the genome_annotation_commands.txt script.<br>Figure scripts are labeled according to figure in manuscript. With exception for MAG coverage data provided here ("TARA_MAGS_repOnly...."), all data are in supplementary file provided with manuscript. Figure1 script also contains code to generate gRodon figure 2a and supplementary figure 2. Supplementary figure 1 was generated in ITOL and does not have an R script associated with it.<br>The DenitCompletenessRawGenomeAnnotations.zip folder contains original annotations for genomes, labeled according to tool used.<br>bac120_r214_HQ_fuso corresponds to tree used in figure S1 as linked in source data filenosZ_2021.gpkg contains the graftM package used to search metagenomes and metatranscriptomes, including HMMs.
DOI: 10.6084/m9.figshare.30122335.v2
title: Supplementary material related to denitrifier completeness - Pold Saghaï Jones Hallin

description: Supplementary alignments and data for nitrous oxide reductase, and scripts for recreating figures in manuscript.<br>Genome_annotation_commands.txt contains the commands used for annotating genomes with original annotation tools.The hmmalign_nucmap_derep_assign.py script and hmmer_genome_as.sh scripts are used to search nt sequences for proteins using a reference amino acid alignment, and are described in the genome_annotation_commands.txt script.<br>Figure scripts are labeled according to figure in manuscript. With exception for MAG coverage data provided here ("TARA_MAGS_repOnly...."), all data are in supplementary file provided with manuscript. Figure1 script also contains code to generate gRodon figure 2a and supplementary figure 2. Supplementary figure 1 was generated in ITOL and does not have an R script associated with it.<br>The DenitCompletenessRawGenomeAnnotations.zip folder contains original annotations for genomes, labeled according to tool used.<br>bac120_r214_HQ_fuso corresponds to tree used in figure S1 as linked in source data file
DOI: 10.7910/dvn/xenmed
title: Calculations on clathrate yield

description: Calculations on clathrate yield for clathrate-based desalination experiments on 17.8 wt% KAc solution at 60 bar methane and -15°C.
DOI: 10.15468/dl.4ckj69
title: Occurrence Download

description: A dataset containing 24801918 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 24801918 records were derived from 61901 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010016-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kkvcxk
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Campylomormyrus numenius)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047190-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q5yycg
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pyrgus cirsii"
 ]
}

 The dataset includes 49 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047191-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7fybn
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia auriculiformis",
 "Country is Madagascar",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047192-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ewuzb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fagopyrum esculentum",
 "Country is Greece",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047193-250717081556266/datasets/export for details.
DOI: 10.15468/dl.avndu3
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia auriculiformis",
 "Country is Myanmar",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047194-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gh5xz
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Antigonon leptopus",
 "Country is Haiti",
 "HasCoordinate is true"
 ]
}

 The dataset includes 39 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047195-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g7jkct
title: Occurrence Download

description: A dataset containing 672 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Antigonon leptopus",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 672 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047196-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4sjqsg
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fagopyrum esculentum",
 "Country is Iceland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047198-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3rcskr
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Antigonon leptopus",
 "Country is Kenya",
 "HasCoordinate is true"
 ]
}

 The dataset includes 36 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047197-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evx7kb
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Brachyhypopomus bullocki)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 24 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047199-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u3qheh
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oligoryzomys arenalis"
 ]
}

 The dataset includes 42 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047200-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7mnp9e
title: Occurrence Download

description: A dataset containing 824651 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Egretta garzetta)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 824651 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047166-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yj93b9
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia auriculiformis",
 "Country is Palau",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047202-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gnvcv6
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Antigonon leptopus",
 "Country is Nauru",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047203-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8fcqq
title: Occurrence Download

description: A dataset containing 28445 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Agave americana"
 ]
}

 The dataset includes 28445 records from 322 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047201-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csxxdw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia auriculiformis",
 "Country is Sierra Leone",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047204-250717081556266/datasets/export for details.
DOI: 10.15468/dl.3gunb9
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Antigonon leptopus",
 "Country is Nigeria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047205-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kk4g5n
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Antigonon leptopus",
 "Country is Niue",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047206-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dxpjez
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia auriculiformis",
 "Country is Singapore",
 "HasCoordinate is true"
 ]
}

 The dataset includes 42 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047207-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zscq6z
title: Occurrence Download

description: A dataset containing 195117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Egretta garzetta)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 195117 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047176-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.