cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.9w0vt4bbv
title: No evidence for divergence in male harmfulness or female resistance in response to changes in the opportunity for dispersal

description: The outcome of sexual conflict can depend on the social environment, as
 males respond to changes in the inclusive fitness payoffs of harmfulness
 and harm females less when they compete with familiar relatives.
 Theoretical models also predict that if limited male dispersal predictably
 enhances local relatedness while maintaining global competition, kin
 selection can produce evolutionary divergences in male harmfulness among
 populations. Experimental tests of these predictions, however, are rare.
 We assessed rates of dispersal in female and male seed beetles
 Callosobruchus maculatus, a model species for studies of sexual conflict,
 in an experimental setting. Females dispersed significantly more often
 than males, but dispersing males travelled just as far as dispersing
 females. Next, we used experimental evolution to test whether limiting
 dispersal allowed the action of kin selection to affect divergence in male
 harmfulness and female resistance. Populations of C. maculatus were
 evolved for 20 and 25 generations under one of three dispersal regimens:
 completely free dispersal, limited dispersal, and no dispersal. There was
 no divergence among treatments in female reproductive tract scarring,
 ejaculate size, mating behaviour, fitness of experimental females mated to
 stock males, or fitness of stock females mated to experimental males. We
 suggest that this is likely due to insufficient strength of kin selection
 rather than a lack of genetic variation or time for selection. Limited
 dispersal alone is therefore not sufficient for kin selection to reduce
 male harmfulness in this species, consistent with general predictions that
 limited dispersal will only allow kin selection if local relatedness is
 independent of the intensity of competition among kin.
description: Data collected from the laboratory experiments described in the
 manuscript referred to. Analysed in R, accoridng to the script
 provided.
DOI: 10.5061/dryad.9w0vt4bbw
title: Data from: Genetic growth potential, rather than phenotypic size, predicts migration phenotype in Atlantic salmon

description: Knowledge of the relative importance of genetic versus environmental
 determinants of major developmental transitions is pertinent to
 understanding phenotypic evolution. In salmonid fishes, a major
 developmental transition enables a risky seaward migration that provides
 access to feed resources. In Atlantic salmon, initiation of the migrant
 phenotype, and thus age of migrants, is presumably controlled via
 thresholds of a quantitative liability, approximated by body size
 expressed long before the migration. However, how well size approximates
 liability, both genetically and environmentally, remains uncertain. We
 studied 32 Atlantic salmon families in two temperatures and feeding
 regimes (fully fed, temporarily restricted) to completion of migration
 status at age 1 year. We detected a lower migrant probability in the cold
 (0.42) than the warm environment (0.76), but no effects of male maturation
 status or feed restriction. By contrast, body length in late summer
 predicted migrant probability and its control reduced migrant probability
 heritability by 50–70%. Furthermore, migrant probability and length showed
 high heritabilities and between-environment genetic correlations, and were
 phenotypically highly correlated with stronger genetic than environmental
 contributions. Altogether, quantitative estimates for the genetic and
 environmental effects predicting the migrant phenotype indicate, for a
 given temperature, a larger importance of genetic than environmental size
 effects.
description: Described in manuscript.
description: Data from fish that died during the study were removed.
DOI: 10.15468/dl.5grvxk
title: Occurrence Download

description: A dataset containing 202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ocythoe tuberculata",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 202 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002305-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18394963
title: Raw TGA–DTA data for PVA and PVA/glycerol films under different heating rates

description: This dataset contains raw thermogravimetric analysis (TGA) and differential thermal analysis (DTA) data supporting the article “Impact of Glycerol and Heating Rate on the Thermal Decomposition of PVA Films” (Polymers 2025, 17, 2095).

The data include sample mass and heat flow as a function of temperature for pure poly(vinyl alcohol) (PVA) films and PVA/glycerol films with different glycerol contents, measured in air and inert (argon) atmospheres at different heating rates.

Only raw experimental data are provided. Derived quantities such as DTG curves, conversion degree, and kinetic parameters can be reproduced from the raw data following the procedures described in the associated article.
DOI: 10.5281/zenodo.18394962
title: Raw TGA–DTA data for PVA and PVA/glycerol films under different heating rates

description: This dataset contains raw thermogravimetric analysis (TGA) and differential thermal analysis (DTA) data supporting the article “Impact of Glycerol and Heating Rate on the Thermal Decomposition of PVA Films” (Polymers 2025, 17, 2095).

The data include sample mass and heat flow as a function of temperature for pure poly(vinyl alcohol) (PVA) films and PVA/glycerol films with different glycerol contents, measured in air and inert (argon) atmospheres at different heating rates.

Only raw experimental data are provided. Derived quantities such as DTG curves, conversion degree, and kinetic parameters can be reproduced from the raw data following the procedures described in the associated article.
DOI: 10.5061/dryad.zcrjdfn7m
title: Data from: Genomic evidence of prevalent hybridization throughout the evolutionary history of the fig-wasp pollination mutualism

description: Ficus (figs) and their agaonid wasp pollinators present an
 ecologically important mutualism that also provides a rich comparative
 system for studying functional co-diversification throughout its
 coevolutionary history (~75 million years). We obtained entire nuclear,
 mitochondrial, and chloroplast genomes for 15 species representing all
 major clades of Ficus. Multiple analyses of these genomic data
 suggest that hybridization events have occurred
 throughout Ficus evolutionary history. Furthermore,
 cophylogenetic reconciliation analyses detect significant incongruence
 among all nuclear, chloroplast, and mitochondrial-based phylogenies, none
 of which correspond with any published phylogenies of the associated
 pollinator wasps. These findings are most consistent with frequent
 host-switching by the pollinators, leading to fig hybridization, even
 between distantly related clades. Here, we suggest that these pollinator
 host-switches and fig hybridization events are a dominant feature of
 fig/wasp coevolutionary history, and by generating novel genomic
 combinations in the figs have likely contributed to the remarkable
 diversity exhibited by this mutualism.
description: Data from: "Genomic evidence of prevalent hybridization
 throughout the evolutionary history of the fig-wasp pollination
 mutualism," which will be published in Nature Communications by Wang
 et al. (NCOMMS-19-539420C). Detail information
 as: Appendix 1: Results for tree construction under
 ASTRAL Appendix 2: Results of analyses under
 BUCKy Appendix 3: Results for <i>Ficus</i> divergence times under MCMCTree Appendix 4: Results for reconstruction of ancestral distributions of <i>Ficus</i> lineages under all six models in BioGeoBEARS  Appendix 5: Chloroplast and mitochondrial genomic sequences and ML phylogenies Appendix 6: Results for hybridization detection under PhyloNetworks Appendix 7: JANE analyses data and phylogenies used Appendix 8: Chloroplast phylogeny of 59 figs studied by Bruun-Lund et al. 2017
DOI: 10.5281/zenodo.18395191
title: Simultaneous Uterine Replacement Protocol (SURP): A Computational Framework for Biomimetic Developmental Engineering in Ischemic Brain Repair

description: This paper presents the Simultaneous Uterine Replacement Protocol (SURP), an advanced bio-engineering strategy to mitigate chronic ischemic brain damage, such as post-stroke paralysis. Departing from conventional stem cell interventions that falter in the inhibitory adult neural microenvironment, SURP employs reverse engineering to emulate the embryonic uterine niche within the infarcted region. The pivotal innovation lies in the ``Simultaneous Replacement'' paradigm: a precisely calibrated biochemical cascade where glial scar degradation rate (k_{deg}) is equilibrated with neo-scaffold polymerization (k_{poly}), thereby addressing the paramount constraint of intracranial volume and pressure homeostasis.Central to SURP is the ``Master Map Molecule'' (M3), a bespoke heparan sulfate proteoglycan (HSPG) featuring tailored sulfation motifs (e.g., 6-O-sulfation predominance with 6-O/4-O ratio >1.5) that encode topological directives (X, Y, Z coordinates) for axon pathfinding, integrated with guidance cues like semaphorins and netrins to prevent ectopic synaptogenesis. This framework is rigorously substantiated through a three-dimensional reaction-diffusion model augmented with stochastic Langevin dynamics, demonstrating that modulating the diffusion coefficient (D) of inhibitory ligands amid chemical noise augments axon elongation velocity (v_{axon} ≈ 0.05 µm/s). Empirical validation draws from traumatic brain injury (TBI) glycome datasets, with Bayesian inference refining parameter uncertainties (e.g., dissociation constant K_d ≈ 0.001 µM, 95% CI [0.0007, 0.0013]). Advanced sensitivity analysis underscores model robustness, while quantitative statistics (e.g., t-test on glycan abundances, p < 0.001) corroborate prognostic alignments. Immunological biocompatibility is ensured via autologous stem cell-derived glycans, minimizing microglial activation. Falsifiability criteria delineate failure modes, such as inefficacy in lesions exceeding 10 years due to vascular sclerosis. SURP furnishes a falsifiable, reproducible blueprint for redefining irreversible neural lesions as tractable engineering endeavors.
DOI: 10.5281/zenodo.18395192
title: Simultaneous Uterine Replacement Protocol (SURP): A Computational Framework for Biomimetic Developmental Engineering in Ischemic Brain Repair

description: This paper presents the Simultaneous Uterine Replacement Protocol (SURP), an advanced bio-engineering strategy to mitigate chronic ischemic brain damage, such as post-stroke paralysis. Departing from conventional stem cell interventions that falter in the inhibitory adult neural microenvironment, SURP employs reverse engineering to emulate the embryonic uterine niche within the infarcted region. The pivotal innovation lies in the ``Simultaneous Replacement'' paradigm: a precisely calibrated biochemical cascade where glial scar degradation rate (k_{deg}) is equilibrated with neo-scaffold polymerization (k_{poly}), thereby addressing the paramount constraint of intracranial volume and pressure homeostasis.Central to SURP is the ``Master Map Molecule'' (M3), a bespoke heparan sulfate proteoglycan (HSPG) featuring tailored sulfation motifs (e.g., 6-O-sulfation predominance with 6-O/4-O ratio >1.5) that encode topological directives (X, Y, Z coordinates) for axon pathfinding, integrated with guidance cues like semaphorins and netrins to prevent ectopic synaptogenesis. This framework is rigorously substantiated through a three-dimensional reaction-diffusion model augmented with stochastic Langevin dynamics, demonstrating that modulating the diffusion coefficient (D) of inhibitory ligands amid chemical noise augments axon elongation velocity (v_{axon} ≈ 0.05 µm/s). Empirical validation draws from traumatic brain injury (TBI) glycome datasets, with Bayesian inference refining parameter uncertainties (e.g., dissociation constant K_d ≈ 0.001 µM, 95% CI [0.0007, 0.0013]). Advanced sensitivity analysis underscores model robustness, while quantitative statistics (e.g., t-test on glycan abundances, p < 0.001) corroborate prognostic alignments. Immunological biocompatibility is ensured via autologous stem cell-derived glycans, minimizing microglial activation. Falsifiability criteria delineate failure modes, such as inefficacy in lesions exceeding 10 years due to vascular sclerosis. SURP furnishes a falsifiable, reproducible blueprint for redefining irreversible neural lesions as tractable engineering endeavors.
DOI: 10.5061/dryad.c59zw3r48
title: Data from: A mechanistic and empirically-supported lightning risk model for forest trees

description: Tree death due to lightning influences tropical forest carbon cycling and
 tree community dynamics.  However, the distribution of lightning
 damage among trees in forests remains poorly understood.  We
 developed models to predict direct and secondary lightning damage to trees
 based on tree size, crown exposure, and local forest structure. 
 We parameterized these models using data on the locations of lightning
 strikes and censuses of tree damage in strike zones, combined with
 drone-based maps of tree crowns and censuses of all trees within a 50-ha
 forest dynamics plot on Barro Colorado Island, Panama.  The
 likelihood of a direct strike to a tree increased with larger exposed
 crown area and higher relative canopy position (emergent &gt; canopy
 &gt;&gt;&gt; subcanopy), whereas the likelihood of secondary
 lightning damage increased with tree diameter and proximity to neighboring
 trees.  The predicted frequency of lightning damage in this
 mature forest was greater for tree species with larger average diameters.
 These patterns suggest that lightning influences forest structure and the
 global carbon budget by nonrandomly damaging large trees.
  Moreover, these models provide a framework for investigating the
 ecological and evolutionary consequences of lightning disturbance in
 tropical forests. Synthesis: Our findings indicate that the distribution
 of lightning damage is stochastic at large spatial grain and relatively
 deterministic at smaller spatial grain (&lt;15 m).  Lightning
 is more likely to directly strike taller trees with large crowns and
 secondarily damage large neighboring trees that are closest to the
 directly struck tree.  The results provide a framework for
 understanding how lightning can affect forest structure, forest dynamics,
 and carbon cycling.  The resulting lightning risk model will
 facilitate informed investigations into the effects of lightning in
 tropical forests.
DOI: 10.15468/dl.uas3nn
title: Occurrence Download

description: A dataset containing 340 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.87265 9.32325,-73.88637 9.31551,-73.89366 9.29975,-73.89137 9.28364,-73.87334 9.26867,-73.8563 9.26993,-73.84357 9.27985,-73.83736 9.2947,-73.84094 9.3071,-73.84883 9.3166,-73.85811 9.3221,-73.87265 9.32325))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 340 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002307-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.r7sqv9s89
title: Spectral composition of light pollution affects melatonin suppression and West Nile virus infection resistance and mortality in the House Sparrow (Passer domesticus).

description: Artificial light at night (ALAN) has become a pervasive anthropogenic
 stressor for both humans and wildlife. Although many negative impacts of
 ALAN on human health have been identified, the consequences for infectious
 disease dynamics are largely unexplored. With the increase in popularity
 of energy efficient light-emitting diodes (LEDs), the effects of spectral
 composition of ALAN have also come into question. Previous studies showed
 that exposure to low levels of incandescent ALAN extended the infectious
 period of House Sparrows infected with West Nile virus (WNV) without
 affecting mortality rates, thus increasing the pathogen initial
 reproductive rate (R0) by about 41%. Here, we asked whether exposure to
 broad-spectrum (3000K [Kelvin; unit of color temperature]) ALAN suppressed
 melatonin, a hormone implicated in ALAN-induced physiological
 consequences, in House Sparrows (Passer domesticus). We then asked whether
 amber-hue bulbs (1800K) could ameliorate the effects of WNV on individual
 sparrows, and whether broad-spectrum or blue-rich bulbs (3000K and 5000K,
 respectively) could exacerbate them. We found that exposure to low
 intensity (~5 lux) broad-spectrum (3000K) ALAN significantly suppressed
 melatonin levels throughout the night. Second, we found that exposure to
 broad-spectrum and blue-rich (3000+5000K) lights did not affect WNV
 viremia but did increase WNV-induced mortality. Conversely, birds exposed
 to amber-hue (1800K) ALAN had lower viremia and mortality rates similar to
 controls (i.e., natural light conditions). This study demonstrates that
 ALAN affects melatonin regulation in birds, but this effect, as well as
 ALAN influences on infectious disease responses, can be ameliorated by
 particular lighting technologies.
DOI: 10.5061/dryad.c2fqz6151
title: Household survey data: incentives influencing tree planting in the Albertine Rift Region of Uganda

description: The study assessed the influence of incentives on tree planting by farmers
 in Kiryanga Sub county, Kagadi district, Albertine Rift Region, Western
 Uganda. Key informant interviews, focus group discussions and household
 interviews were conducted to generate data on the influence of incentives
 on tree planting. The χ2 test established associations between incentives
 and tree planting while a t-test was conducted to test for differences in
 characteristics of non-tree farmers and tree farmers. Results indicate
 that incentives are important in tree planting although some did not match
 farmers’ interests (χ2 = 35.13, p &lt;0.05). The incentives that were
 significant were: provision of tree seedlings (84.6%) and cash payments
 (69.4%) while farm tours as an incentive did not match farmers’ interests.
 The success attributed to incentives mainly depended on land size, and
 tree species’ preferences. The study concluded that, provision of tree
 seedlings and cash payments should be the incentives to be promoted. It is
 therefore important that stakeholders adopt incentive-based tree planting.
description: We undertook a study in Kiryanga Sub County, located in Kagadi
 district, Buyaga East County in the Albertine Region. Kiryanga Sub County
 was one of the eight Sub Counties in the three districts of the Albertine
 Rift Region - Hoima, Kagadi and Kakumiro, where the Murchison‐Semliki
 REDD+ Pilot Project was involved in incentive-based tree planting
 (Wieland, 2012). Forests in Kiryanga are under threat leading to loss of
 biodiversity (NEMA, 2009).  We conducted 11 Key informant interviews, 6
 focus group discussions and 218 household interviews to generate
 information on the influence of incentives on tree planting among both
 tree farmers and non-tree farmers. We restricted our survey to an 18 year
 time period; that is, from 2000 to 2018. The key questions we asked were:
 1) which incentives were given for tree planting? and 2) which incentives
 were more preferred by farmers?
DOI: 10.5061/dryad.4f4qrfj89
title: Data from: How to date a crocodile – estimation of neosuchian clade ages and a comparison of four time-scaling methods

description: Clade ages within the crocodylomorph clade Neosuchia have long been
 debated. Molecular and morphological studies have yielded remarkably
 divergent results. Despite recent advances, there has been no
 comprehensive relative comparison of the major time calibration methods
 available to estimate clade ages based on morphological data. We used four
 methods (cal3, Extended Hedman [EH], smoothed Ghost-Lineage-Analysis
 [sGLA] and the Fossilised Birth-Death model [FBD]) to date clade ages
 derived from a published crocodylomorph supertree and a new neosuchian
 phylogeny. All time-scaling methods applied here agree on the origination
 of Neosuchia during the Late Triassic/Early Jurassic, and the presence of
 the major extant eusuchian groups (Crocodyloidea, Gavialoidea,
 Alligatoroidea, and Caimaininae) by the end of the Late Cretaceous. The
 number of distinct lineages present before the K/Pg boundary is less
 certain, with support for two competing scenarios in which Crocodylinae,
 Tomistominae and Diplocynodontinae either: 1) diverged from other
 eusuchian lineages before the K/Pg boundary; or 2) evolved during a
 ‘burst’ of diversification after the K/Pg event. Cal3 and FBD are
 identified as the most suitable methods for time-scaling phylogenetic
 trees dominated by fossil taxa. Extended Hedman estimates are
 substantially older than the others, with larger standard deviations and a
 strong vulnerability to taxon sampling and topological changes. sGLA has
 similar problems and cannot be recommended either. We conclude that a
 detailed understanding of phylogenetic relationships, tree reconstruction
 methods, and good taxonomic coverage (in particular the inclusion of the
 oldest taxon in each clade) is essential when evaluating the results of
 such dating analyses.
description: Dataset contains: 1. Discretised and
 rediscretised versions of the character matrix, collected in person by
 personal scoring of museum specimens by the authors and additional
 information in the literature (based on Groh <em>et al.</em>
 2020). Character lists that the character scores are based on are also
 given. 2. Analysis protocol for the datasets, to be
 used in TNT. 3. Raw data for time-scaling analysis -
 all taxa in their tree together with the associated age information, plus
 raw R and .xml files. Collected via literature review and PBDB.
 4. The R code used for analysis, based on earlier work by other
 authors (cited in main paper) and code written by the authors.
 5. Raw results for the time-scaling analysis, detailing the age
 of each named node obtained by each dating method for each tree.
description: File structure, file name and file contents are explained in
 detail in the file Groh_2020_croc_times_README.txt.
DOI: 10.6084/m9.figshare.31164499
title: ReCoVer 1/2

description: Pictures from <i>Acropora spathulata</i> colonies from New Caledonia and Coral Sea atolls within the project ReCoVer. Samples metadata can be accessed through GEOME portal: https://n2t.net/ark:/21547/R2650<br><br>
DOI: 10.6084/m9.figshare.31164499.v1
title: ReCoVer 1/2

description: Pictures from <i>Acropora spathulata</i> colonies from New Caledonia and Coral Sea atolls within the project ReCoVer. Samples metadata can be accessed through GEOME portal: https://n2t.net/ark:/21547/R2650<br><br>
DOI: 10.82294/dvn51mluv
title: Observaciones semiestructuradas. Territorio: Guainía. Eje medular: Agenciamiento. Sector: Cultura. Año: 2025

description: La capacidad de agencia o agenciamiento se entiende como las libertades y oportunidades que tiene un individuo para tomar decisiones y actuar en un contexto, transformando situaciones que afectan a su comunidad a nivel social y ambiental. Implica la capacidad de razonar críticamente y llevar a cabo acciones intencionales. En el ámbito de la educación artística y ambiental, esto se manifiesta en la capacidad de realizar el potencial creativo y de contribuir a la construcción de una realidad institucional o social (Maras, 2018; Katz-Buonicontro, 2018; García-Calvo y Garzón-Barragán, 2023).