cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7120355.v1
title: Additional file 5: of Transcriptional profiling of liver during the critical embryo-to-hatchling transition period in the chicken (Gallus gallus)

description: Canonical and biological pathways identified by IPA in the E18 vs. E20 contrast. The AR-DEGs from the E18 vs. E20 contrast were assigned by IPA to overrepresented canonical and functional pathways. IPA uses Fisher’s Exact Test to determine probability (P ≤ 0.05) of each AR-DEG belonging to a particular canonical pathway or biological function. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.12886114
title: Additional file 1 of The top 100 most cited articles on bronchoscopy: a bibliometric analysis

description: Additional file 1.
DOI: 10.17190/amf/1881577
title: AmeriFlux FLUXNET-1F US-CS2 Tri county school Pine Forest

description: This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-CS2 Tri county school Pine Forest. This is the FLUXNET version of the carbon flux data for the site US-CS2 Tri county school Pine Forest produced by applying the standard ONEFlux (1F) software. Site Description - Tri county school Forest
DOI: 10.6084/m9.figshare.7120334.v1
title: Additional file 3: of Transcriptional profiling of liver during the critical embryo-to-hatchling transition period in the chicken (Gallus gallus)

description: Annotated gene list for 14 pairwise contrasts of liver transcriptomes in embryos and hatchlings across six ages during the peri-hatch period (E16-D9). The last worksheet provides the list of 1005 commonly-shared AR-DEGs identified by the Venn diagram shown in Fig. 3b. Each worksheet provides a list of the “Analysis Ready” (AR)-DEGs (FDR adjusted P ≤ 0.05; ±0.75 cutoff) for each contrast. (XLSX 905 kb)
DOI: 10.6084/m9.figshare.1330063
title: Standards-based curation of a decade-old digital repository dataset of molecular information.

description: We report the procedures used in the curation of 158,122 molecular geometries deriving from the NCI set of reference molecules together with associated properties computed using the MOPAC semi-empirical quantum mechanical method and originally deposited in 2005 into the Cambridge DSpace repository as a data collection. The curation involved annotation of the original data using new MOPAC methods, updating the syntax of the CML documents used to express the data to ensure schema conformance and adding new metadata describing the entries together with a XML schema transformation to map the metadata schema to that used by the DataCite organisation. We have adopted a granularity model in which a DataCite persistent identifier (DOI) is created for each individual molecule to enable data discovery and data metrics at this level using DataCite tools. We recommend that the future research data management (RDM) of the scientific and chemical data components associated with journal articles (the "supporting information") should be conducted in a manner that facilitates automatic periodic curation.
DOI: 10.6084/m9.figshare.7120199.v1
title: MOESM2 of Dynamic stability and spatiotemporal parameters during turning in healthy young adults

description: Additional file 2. Spatiotemporal parameters, MoSA, MoSP, MoSL and MoSR for healthy young adults (n = 15). Mean (95% confidence interval). Statistically significant difference (p &lt; 0.05) from the first phase of same condition (a), the second phase of same condition (t), straight walking (*), between turn conditions (†). ‡: Statistically significant difference (p &lt; 0.05) between the absolute mean value of walking direction in spin turn and that in step turn.
DOI: 10.6084/m9.figshare.21275995.v1
title: Additional file 3 of Interaction of miR-200a-3p with YAP regulates cell proliferation and metastasis differentially in HPV-positive and HPV-negative cervical cancer cells

description: Additional file 3.
DOI: 10.6084/m9.figshare.25232240.v1
title: <b>Supplemental Digital Content 2. Quality control data for cTn assays</b>

description: This table provides the quality control data for both cardiac troponin T (cTnT) and cardiac troponin I (cTnI) assays.
DOI: 10.17190/amf/1881588
title: AmeriFlux FLUXNET-1F US-Ro1 Rosemount- G21

description: This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Ro1 Rosemount- G21. This is the FLUXNET version of the carbon flux data for the site US-Ro1 Rosemount- G21 produced by applying the standard ONEFlux (1F) software. Site Description - This tower is located in a farm field farmed in accordance with the dominant farming practice in the region: a corn/soybean rotation with chisel plow tillage in the fall following corn harvest and in the spring following soybeans.
DOI: 10.6084/m9.figshare.16557354.v1
title: Additional file 3 of A transcriptome-wide association study of Alzheimer’s disease using prediction models of relevant tissues identifies novel candidate susceptibility genes

description: Additional file 3: Table S3. Individual tissue model derived associations for 35 genes newly identified in the present TWAS.
DOI: 10.6084/m9.figshare.16557342
title: Additional file 13 of A transcriptome-wide association study of Alzheimer’s disease using prediction models of relevant tissues identifies novel candidate susceptibility genes

description: Additional file 13. An R script for FOCUS fine-mapping analysis.
DOI: 10.6084/m9.figshare.7120199
title: MOESM2 of Dynamic stability and spatiotemporal parameters during turning in healthy young adults

description: Additional file 2. Spatiotemporal parameters, MoSA, MoSP, MoSL and MoSR for healthy young adults (n = 15). Mean (95% confidence interval). Statistically significant difference (p &lt; 0.05) from the first phase of same condition (a), the second phase of same condition (t), straight walking (*), between turn conditions (†). ‡: Statistically significant difference (p &lt; 0.05) between the absolute mean value of walking direction in spin turn and that in step turn.
DOI: 10.6084/m9.figshare.16557345
title: Additional file 1 of A transcriptome-wide association study of Alzheimer’s disease using prediction models of relevant tissues identifies novel candidate susceptibility genes

description: Additional file 1: Table S1.. Internal performance of gene expression genetic prediction models of ten brain tissues.
DOI: 10.6084/m9.figshare.16557369
title: Additional file 6 of A transcriptome-wide association study of Alzheimer’s disease using prediction models of relevant tissues identifies novel candidate susceptibility genes

description: Additional file 6: Table S6. Full list of risk SNPs and their distances with the associated genes.
DOI: 10.6084/m9.figshare.16557372
title: Additional file 7 of A transcriptome-wide association study of Alzheimer’s disease using prediction models of relevant tissues identifies novel candidate susceptibility genes

description: Additional file 7: Table S7. Canonical pathway of identified genes by TWAS.
DOI: 10.6084/m9.figshare.7120379.v1
title: Additional file 7: of Transcriptional profiling of liver during the critical embryo-to-hatchling transition period in the chicken (Gallus gallus)

description: Canonical and biological pathways found by IPA in the D1 vs. D9 hatchling contrast. The AR-DEGs identified in the D1 vs. D9 contrast were assigned by IPA to overrepresented canonical and functional and pathways. IPA uses Fisher’s Exact Test to determine probability (P ≤ 0.05) of each AR-DEG belonging to a particular canonical pathway or biological function. Each worksheet provides a list of AR-DEGs assigned to particular canonical pathways or biological functions, annotated with gene symbol, Entrez name, log2 ratio, cellular compartment, type and Entrez protein ID. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.7120379
title: Additional file 7: of Transcriptional profiling of liver during the critical embryo-to-hatchling transition period in the chicken (Gallus gallus)

description: Canonical and biological pathways found by IPA in the D1 vs. D9 hatchling contrast. The AR-DEGs identified in the D1 vs. D9 contrast were assigned by IPA to overrepresented canonical and functional and pathways. IPA uses Fisher’s Exact Test to determine probability (P ≤ 0.05) of each AR-DEG belonging to a particular canonical pathway or biological function. Each worksheet provides a list of AR-DEGs assigned to particular canonical pathways or biological functions, annotated with gene symbol, Entrez name, log2 ratio, cellular compartment, type and Entrez protein ID. (XLSX 31 kb)
DOI: 10.5281/zenodo.10474632
title: Supplement to "Long-term stability, noise, and temperature sensitivity of modular porous-pot electrodes..."

description: Supplement to "Long-term stability, noise, and temperature sensitivity of modular porous-pot electrodes..."
DOI: 10.6084/m9.figshare.16557360
title: Additional file 5 of A transcriptome-wide association study of Alzheimer’s disease using prediction models of relevant tissues identifies novel candidate susceptibility genes

description: Additional file 5: Table S5. FOCUS fine mapping analysis results of AD TWAS identified genes across ten train tissues.
DOI: 10.6084/m9.figshare.7120394
title: Additional file 8: of Transcriptional profiling of liver during the critical embryo-to-hatchling transition period in the chicken (Gallus gallus)

description: Pearson’s correlation analysis of gene expression levels of 15 “candidate” DEGs determined by genome microarray and verified by qRT-PCR analyses. A Microsoft Excel file containing the average normalized expression levels (log2 ratios) of 15 candidate DEGs as determined by genome microarray analysis and verified by qRT-PCR analysis. The Pearson’s correlation coefficient (r = 0.9287; P ≤ 0.01, 11 degrees of freedom) indicates a highly significant correlation between gene expression levels obtained from both microarray and qRT-PCR analyses. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.16557372.v1
title: Additional file 7 of A transcriptome-wide association study of Alzheimer’s disease using prediction models of relevant tissues identifies novel candidate susceptibility genes

description: Additional file 7: Table S7. Canonical pathway of identified genes by TWAS.
DOI: 10.6084/m9.figshare.16557357
title: Additional file 4 of A transcriptome-wide association study of Alzheimer’s disease using prediction models of relevant tissues identifies novel candidate susceptibility genes

description: Additional file 4: Table S4. Eighteen expression-trait associations for genes identified in the present and previous TWAS.
DOI: 10.6084/m9.figshare.16557378.v1
title: Additional file 9 of A transcriptome-wide association study of Alzheimer’s disease using prediction models of relevant tissues identifies novel candidate susceptibility genes

description: Additional file 9: Table S9. Top 20 disease functional categories of identified genes.
DOI: 10.5281/zenodo.10669575
title: Time_Analysis_with_Bose-Einstein_distribution
DOI: 10.5281/zenodo.10669576
title: Time_Analysis_with_Bose-Einstein_distribution
DOI: 10.6084/m9.figshare.9741818
title: Supplementary data from A nonlinear hyperelasticity model for single layer blue phosphorus based on <i>ab initio</i> calculations

description: figure_data.txt: Raw data for all figures; FEM_input.txt: Input file for the finite element example in Sec. 6.1; sample_DFT_input.txt: Sample input file for Quantum ESPRESSO
DOI: 10.6084/m9.figshare.21275995
title: Additional file 3 of Interaction of miR-200a-3p with YAP regulates cell proliferation and metastasis differentially in HPV-positive and HPV-negative cervical cancer cells

description: Additional file 3.
DOI: 10.6084/m9.figshare.7120436
title: Additional file 1: of A comparative analysis of library prep approaches for sequencing low input translatome samples

description: Table S1. Library preparation performed in this study. Table S2 Gene list with RPKM greater than 10,000. Table S3 Median of genes from unique and shared regions of Venn diagram. Table S4 Spearman correlation coefficients between different profiles. (XLSX 28 kb)
DOI: 10.5281/zenodo.8365251
title: Dataset of "Frequency Chirping of Electromagnetic Ion Cyclotron Waves in Earth's Magnetosphere"

description: Dataset of "Frequency Chirping of Electromagnetic Ion Cyclotron Waves in Earth's Magnetosphere", including the electromagnetic fields observed by Cluster, THEMIS or Van Allen Probes satellites and their definitive positions used to calculate EMIC wave chirping rates in the paper. Each folder in the dataset contains the entire data of one in the 15 cases of EMIC wave frequency chirping.
DOI: 10.6084/m9.figshare.16557627
title: Ubiquitin specific peptidase 33 promotes cell proliferation and reduces apoptosis through regulation of the SP1/PI3K/AKT pathway in retinoblastoma

description: Ubiquitin-specific protease 33 (USP33), a deubiquitinating enzyme (DUB), has been identified to serve as a tumor suppressor or an oncogene in different cancers. However, its role in retinoblastoma (RB) remains unknown. Here, we aimed to uncover USP33 expression profile and function in RB, and disclose the underlying mechanism. USP33 levels in RB tissues and cells were determined using RT-qPCR and western blotting assays. USP33 effects on cell growth, cycle, apoptosis and tumorigenesis were studied using MTT, Edu, cycle and western blotting and <i>in vivo</i> assays. The results showed that USP33 expression levels were elevated in RB tissues and cells as compared with normal retinal tissues and cells. Downregulation of USP33 in RB Y79 and WERI-RB1 cells leaded to significant increases in cell apoptosis, G1 phase arrest and tumorigenesis, and reductions in cell growth and G2 and S phase arrest, as well as inhibited the activation of the PI3K/AKT signaling. SP1 overexpression abolished the roles of USP33 downregulation in modulating the activation of PI3K/AKT signaling, cell growth, apoptosis, and cell cycle. This study uncovered that USP33 promoted the progression of RB through regulation of the SP1/PI3K/AKT pathway.
DOI: 10.5281/zenodo.4773573
title: Geostratigraphic map of Rachmaninoff crater and Nathair Facula in the Hokusai Quadrangle (H05) of Mercury

description: Geostratigraphic map of Rachmaninoff crater and Nathair Facula in the Hokusai Quadrangle (H05) of Mercury. 5 crater classes.
DOI: 10.6084/m9.figshare.16557627.v2
title: Ubiquitin specific peptidase 33 promotes cell proliferation and reduces apoptosis through regulation of the SP1/PI3K/AKT pathway in retinoblastoma

description: Ubiquitin-specific protease 33 (USP33), a deubiquitinating enzyme (DUB), has been identified to serve as a tumor suppressor or an oncogene in different cancers. However, its role in retinoblastoma (RB) remains unknown. Here, we aimed to uncover USP33 expression profile and function in RB, and disclose the underlying mechanism. USP33 levels in RB tissues and cells were determined using RT-qPCR and western blotting assays. USP33 effects on cell growth, cycle, apoptosis and tumorigenesis were studied using MTT, Edu, cycle and western blotting and <i>in vivo</i> assays. The results showed that USP33 expression levels were elevated in RB tissues and cells as compared with normal retinal tissues and cells. Downregulation of USP33 in RB Y79 and WERI-RB1 cells leaded to significant increases in cell apoptosis, G1 phase arrest and tumorigenesis, and reductions in cell growth and G2 and S phase arrest, as well as inhibited the activation of the PI3K/AKT signaling. SP1 overexpression abolished the roles of USP33 downregulation in modulating the activation of PI3K/AKT signaling, cell growth, apoptosis, and cell cycle. This study uncovered that USP33 promoted the progression of RB through regulation of the SP1/PI3K/AKT pathway.
DOI: 10.6084/m9.figshare.7120316.v1
title: Additional file 1: of Transcriptional profiling of liver during the critical embryo-to-hatchling transition period in the chicken (Gallus gallus)

description: Experimental design of microarray hybridizations. A Microsoft Excel file containing a single work sheet â Array Hybridization Designâ which describes the hybridization scheme used for the 24 Affymetrix Chicken Genome Arrays. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.22256469
title: APPLICATION OF PHYSICAL TRAINING IN COLLEGE SOCCER REHABILITATION

description: ABSTRACT Introduction Soccer is a sport with strong rivalry, and participants are prone to various sports injuries in the sporting process. Preventing sports injuries during soccer training is an issue to be considered. Objective Explore the effect of physical rehabilitation training on preventing sports injuries during college soccer training. Methods 120 athletes who participated in optional soccer courses were divided into control group and experimental group. The experimental group underwent intervention with 8 weeks of rehabilitative physical training, while the control group did not adopt any interventional measures. Results After 8 weeks of physical rehabilitative training, the exercise capacity of the athletes in the experimental group was significantly higher than that of the control group who had no rehabilitative training, and the proportion of sports injuries was lower than that of the control group. Conclusion 8 weeks of physical rehabilitation training can effectively improve the physical mobility ability of soccer players and reduce the veiled danger of injury. Level of evidence II; Therapeutic studies - investigation of treatment outcomes.
DOI: 10.6084/m9.figshare.22256469.v1
title: APPLICATION OF PHYSICAL TRAINING IN COLLEGE SOCCER REHABILITATION

description: ABSTRACT Introduction Soccer is a sport with strong rivalry, and participants are prone to various sports injuries in the sporting process. Preventing sports injuries during soccer training is an issue to be considered. Objective Explore the effect of physical rehabilitation training on preventing sports injuries during college soccer training. Methods 120 athletes who participated in optional soccer courses were divided into control group and experimental group. The experimental group underwent intervention with 8 weeks of rehabilitative physical training, while the control group did not adopt any interventional measures. Results After 8 weeks of physical rehabilitative training, the exercise capacity of the athletes in the experimental group was significantly higher than that of the control group who had no rehabilitative training, and the proportion of sports injuries was lower than that of the control group. Conclusion 8 weeks of physical rehabilitation training can effectively improve the physical mobility ability of soccer players and reduce the veiled danger of injury. Level of evidence II; Therapeutic studies - investigation of treatment outcomes.
DOI: 10.5258/soton/d0097
title: Dataset for "Analytical modelling of the vibration of railway track"

description: This dataset supports the PhD thesis of the same name.
DOI: 10.6084/m9.figshare.12490253.v1
title: Plazas (2020) Collaborative or conflicting role of select and reject control in equivalence

description: Data from the manuscript: "Do select and reject control play a collaborative or conflicting role in the emergence of equivalence?" submitted to revision. There are eight groups, each trained on different configurations of select and reject control, and tested on reflexivity, symmetry, and transitivity for the emergence of stimulus equivalence relations.
DOI: 10.5281/zenodo.10201158
title: Stronger oceanic CO2 sink in eddy-resolving simulations of global warming: simulations outputs

description: This repository contains 1) the air-sea CO2 flux and the Dissolved Inorganic Carbon (DIC) distribution in idealized simulations run at different resolutions 2) the terms of the DIC budget for each simulation integrated temporally on the all simulation and integrated spatially on different boxes of the domain. These data are used in the article "Stronger oceanic CO$_2$ sink in eddy-resolving simulations of global warming" published in Geophysical Research Letters for producing Figs. 2, 3, 4. Refer to this paper for details about the data.
DOI: 10.3886/e194781v2
title: ECIN Replication Package for "Capital Controls, Banking Competition, and Monetary Policy"

description: The documents provide instructions to replicate results in "Capital Controls, Banking Competition, and Monetary Policy" by Ghossoub, Harrison, and Reed.
DOI: 10.17632/kvvdgvs8zs.2
title: Data on the impact of COVID 19 on Parental Engagement across 23 countries

description: This data article demonstrates on the impact of International Covid 19 on parental engagement study (ICIPES) investigated the ways in which parents and caregivers are building capacity to engage with children’s learning during the period of social distancing arising from global Covid-19 pandemic. The online survey was conducted in 23 countries across the world. Using a random sample method, a sample size of 4658 parents/caregivers was surveyed from 23 countries. The data were obtained via a semi-structured questionnaire.
DOI: 10.5281/zenodo.4773443
title: PLANMAP - Deliverable D2.2 Mercury H-05 Hokusai quadrangle 5 crater classes

description: Hokusai quadrangle geologic (morphostratigraphic) map, 5 crater classes
DOI: 10.5281/zenodo.1404708
title: Hydrodynamic and turbulence under breaking waves at the CIEM flume, Hydralab +

description: Processed phase-averaged experimental data of the bichromatic wave condition as reported in: van der Zanden, J., van der A, D.A., Cáceres, I., Eltard Larsen, B., Fromant, G., Petrotta, C., Scandura, P., Li, M. (2019). Spatial and temporal distributions of turbulence under bichromatic breaking waves. Coastal Engineering, 146, 65–80. https://doi.org/10.1016/j.coastaleng.2019.01.006 Larsen, B.E., van der A, D.A., van der Zanden, J., Ruessink, G., Fuhrman, D.R. (2020). Stabilized RANS simulation of surf zone kinematics and boundary layer processes beneath large-scale plunging waves on a breaker bar, Ocean Modelling, 155, 101705. https://doi.org/10.1016/j.ocemod.2020.101705
description: Experimental data report can be found in Version 1 of this Zenodo dataset
description: {"references": ["van der Zanden et al. (2019), https://doi.org/10.1016/j.coastaleng.2019.01.006", "Larsen et al. (2020), https://doi.org/10.1016/j.ocemod.2020.101705"]}
DOI: 10.6084/m9.figshare.14987069
title: Modeling and simulation of cochlear perimodiolar electrode based on composite spring-mass model

description: This paper proposes, a method for the physical modeling of the perimodiolar electrode, particularly for the process of recovering its preset shape with the guide wire drawn out, based on the composite spring-mass model by employing the virtual-volumetric spring inspired from the traditional spring-mass model. Simulation experiments of modeling and virtual insertion of perimodiolar electrode were carried out. The results indicated that the mean and standard deviation of the difference between the local deformation angles of the simulated and measured sets of mass points, (1, 2, 3), (2, 3, 4), …, (13, 14, 15), were 6.34° and 5.98°, respectively. Additionally, the physical model of the perimodiolar electrode can reflect the overall morphological changes of the real perimodiolar electrode.
DOI: 10.6084/m9.figshare.24920151
title: Sequencing data of <i>rv1878</i> insert in the pJET-1878 construct produced during the generation of the complementation of the ∆<i>rv</i>1878 M.tb mutant

description: The rv1878 gene (glnA3) that was cloned into the subcloning vector pJET for the purpose of generating the complementation construct.Many primers were used to sequence the insert, and the last two files are the in silico designed constructs used as template during screening and alignments. The insert could face either direction, so either template could be used depending on the direction of the insert.