cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7766766
title: "Get a Grip" dataset from the Me, Human project

description: This work has been conducted at the London Science Museum between 02/07/2019 and 31/09/2019 and is part of the public engagement and citizen science collaboration project called Me, Human (www.mehuman.io/). The data set includes raw data of grip strength (power grip and precision grip) measured on visitors of the London Science Museum (UK). The experiments took place at the Science Museum in London during the summer months when the museum was more likely to attract international visitors. We did not record the ethnicity of the participants. All participants gave their written informed consent before participating in the study. The study was conducted in accordance with the Declaration of Helsinki, and the protocol was approved by the Department of Psychological Sciences Ethics Committee at Birkbeck (ref: 181996), University of London. For more details on the method employed, see the published articles: Bardo A., Kivell T.L., Town K., Donati G., Ballieux H., Stamate C., Edginton T., Forrester G.S., 2021. Get a grip: variation in modern human grip strength and implication for human evolution. Symmetry 13(7), 1142. DOI: 10.3390/sym13071142. Bardo A., Town K., Kivell T.L., Donati G., Ballieux H., Stamate C., Edginton T., Forrester G.S, 2022. The precision of the human hand: variability in pinch strength and manual dexterity. Symmetry 14(1), 71. DOI: 10.3390/sym14010071. <strong>Version V1.0</strong>: raw data of the grip strength (power grip and precision grip) in 663 adults (17 to 83 years old).
description: {"references": ["Bardo A., Kivell T.L., Town K., Donati G., Ballieux H., Stamate C., Edginton T., Forrester G.S., 2021. Get a grip: variation in modern human grip strength and implication for human evolution. Symmetry 13(7), 1142. DOI: 10.3390/sym13071142.", "Bardo A., Town K., Kivell T.L., Donati G., Ballieux H., Stamate C., Edginton T., Forrester G.S, 2022. The precision of the human hand: variability in pinch strength and manual dexterity. Symmetry 14(1), 71. DOI: 10.3390/sym14010071."]}
DOI: 10.6073/pasta/f9c031ed2d05de2ca465b9066deb7c74
title: Measurements of aquatic production and respiration in tidal creeks draining high and low elevation marshes.

description: Production and respiration measurements of aquatic systems can help to inform calculations of whole system metabolism. These measurements are focused on creeks draining high and low elevation marsh systems to develop a better understanding of connectivity between aquatic production and consumption and coastal salt marshes. Production and respiration were determined by measuring oxygen changes in creek water incubated in light and dark bottles.
DOI: 10.25345/c5ww77904
title: MassIVE MSV000091544 - The intestinal clock controls hosts metabolic response to diet by driving intestinal metabolic functions and the fiberdependent microbiome
title: Circadian disruption, e.g. through shift work, causes microbial dysbiosis and increases the risk of metabolic diseases. Microbial rhythmicity in mice depends on a functional intestinal clock and frequent jetlag and high-caloric energy intake induces loss of these oscillations. Similarly, arrhythmic microbiota was found in obese and T2D populations. However, the interplay between the intestinal circadian clock, the microbiome, diet and host metabolism is poorly understood. In intestinal-specific Bmal1 knockout mice (Bmal1IEC-/-) we demonstrate the relevance of the intestinal clock in microbiome oscillations and host and microbial nutrient metabolism. Microbiota transfer from Bmal1IEC-/- mice into germ-free recipients led to obesity, reflected by increased bodyweight and fat mass. Western diet-fed Bmal1IEC-/- mice increased bodyweight likely through mechanisms involving the intestinal clock-control of lipid and hexose transporters. Additionally, we identified dietary fiber as novel link between circadian microbial rhythmicity, intestinal clock functioning and host physiology. Thus, fiber-rich diet intervention might become a potential non-invasive prevention strategy to target microbial oscillations in people at risk to develop metabolic diseases.
DOI: 10.6073/pasta/152912d0b8c25af000978c5c8630a687
title: Short term accretion measured using marker horizon of feldspar at Space For Time locations.

description: This dataset provides a survey of short term accretion across the PIE LTER at both high and low marsh sites. A marker horizon plot was established and sampled annually to determine depth of accretion since deployment.
DOI: 10.6073/pasta/bed84a89b479d6acd588ded3dcde495c
title: Plant aboveground biomass dry weight record for Space for Time plots in PIE LTER.

description: Aboveground biomass measurements were conducted annually near peak biomass to evaluate aboveground plant production and determine differences in relation to other biotic and abiotic factors. In a 0.053 m2 plot, aboveground biomass was clipped to the soil surface at Space For Time plots, dried, and weighed to capture dry weight.
DOI: 10.6073/pasta/042225ffa966f1959d1f811abdf72401
title: Soil core metrics taken at Space for Time plots across the PIE LTER.

description: Soil cores were collected and evaluated at three different depth intervals for bulk density, organic matter by loss on ignition (LOI), pore water ammonium, and pore water salinity. These biotic and abiotic factors differ across marsh types and elevations and help to parameterize other measurements of marsh structure and function, as well as provide insight into marsh heterogeneity within a single site.
DOI: 10.6084/m9.figshare.22332187
title: C.diphtheriae_ISS_3319.embl.gz

description: Genome annotation of the C. diphtheriae ISS 3319 reference genome (NZ_CP025209.1) used for the analysis of transposon insertion data
DOI: 10.6084/m9.figshare.22332187.v1
title: C.diphtheriae_ISS_3319.embl.gz

description: Genome annotation of the C. diphtheriae ISS 3319 reference genome (NZ_CP025209.1) used for the analysis of transposon insertion data
DOI: 10.6084/m9.figshare.22027763.v5
title: Supplementary data, scripts, and files

description: All data, scripts, and files needed to reproduce the figures and findings from the paper.
DOI: 10.34740/kaggle/dsv/5227716
title: COVID Vaccination in World (updated daily)
DOI: 10.5281/zenodo.7767193
title: van de Ven et al_2023_postGlasgow_NCC_Dataset

description: This dataset contains the underlying data (IAM outputs, feasibility assessment, temperature projections) for the journal article by van de Ven et al. currently in revision in Nature Climate Change, titled "A multi-model analysis of post-Glasgow climate targets and feasibility challenges".
DOI: 10.5281/zenodo.7767192
title: van de Ven et al_2023_postGlasgow_NCC_Dataset

description: This dataset contains the underlying data (IAM outputs, feasibility assessment, temperature projections) for the journal article by van de Ven et al. currently in revision in Nature Climate Change, titled "A multi-model analysis of post-Glasgow climate targets and feasibility challenges".
DOI: 10.5281/zenodo.7763322
title: CoMPaDReS: Quantification of Protein Dynamics by Solid-State NMR in the Presence of Paramagnetic Dopants

description: Supporting dataset for paper
DOI: 10.5281/zenodo.7763321
title: CoMPaDReS: Quantification of Protein Dynamics by Solid-State NMR in the Presence of Paramagnetic Dopants

description: Supporting dataset for paper
DOI: 10.5281/zenodo.7767046
title: Fano Interference in Microwave Resonator Measurements

description: Data, Python notebooks and figures associated with the paper "Fano Interference in Microwave Resonator Measurements" by D. Rieger & S. Günzler et al. at Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany. The data is saved in NumPy binary compressed .npz format. The notebooks and data reproduce the figures of the manuscript. Moreover, we provide an example implementation and measurement analysis notebook for the circle fit discussed in the manuscript. For any additional information please contact: dennis.rieger@kit.edu, simon.guenzler@kit.edu or ioan.pop@kit.edu
description: {"references": ["Rieger & G\u00fcnzler et al., \"Fano Interference in Microwave Resonator Measurements\", arXiv:2209.03036 (2022)"]}
DOI: 10.5281/zenodo.7767045
title: Fano Interference in Microwave Resonator Measurements

description: Data, Python notebooks and figures associated with the paper "Fano Interference in Microwave Resonator Measurements" by D. Rieger & S. Günzler et al. at Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany. The data is saved in NumPy binary compressed .npz format. The notebooks and data reproduce the figures of the manuscript. Moreover, we provide an example implementation and measurement analysis notebook for the circle fit discussed in the manuscript. For any additional information please contact: dennis.rieger@kit.edu, simon.guenzler@kit.edu or ioan.pop@kit.edu
description: {"references": ["Rieger & G\u00fcnzler et al., \"Fano Interference in Microwave Resonator Measurements\", arXiv:2209.03036 (2022)"]}
DOI: 10.25345/c5s756v8h
title: MassIVE MSV000091545 - BCderivatisation test sample set
title: Test derivatisation samples for benzoyl chloride derivatisation with standard curve
DOI: 10.5517/ccdc.csd.cc2d1kz0
title: CCDC 2206052: Experimental Crystal Structure Determination

description: Related Article: Mikhail S. Belousov, Yusuke Okada, Nagao Kobayashi,* Alexander G. Martynov, Margaret A. Gradova, Dmitry V. Konev, Olga A. Goncharova, Viktor A. Tafeenko, Tatiana V. Dubinina|2023|Bull.Chem.Soc.Jpn.|96|226|doi:10.1246/bcsj.20220319
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.7303/syn51228232
title: GRP78 COVID-19 Monocytes
DOI: 10.5281/zenodo.7767255
title: Thermoluminescent Dosemeter type testing

description: Influence quantity tests for energy, angular response and dosemeter non-linearity for measurement of operational dosimetry quantities (personal dose equivalent Hp(10) and Hp(0.07)), for two holder models 8814 and 8850.
DOI: 10.13140/rg.2.2.33732.09603
title: Velibor Božić RAW DATA
DOI: 10.5281/zenodo.7767254
title: Thermoluminescent Dosemeter type testing

description: Influence quantity tests for energy, angular response and dosemeter non-linearity for measurement of operational dosimetry quantities (personal dose equivalent Hp(10) and Hp(0.07)), for two holder models 8814 and 8850.
DOI: 10.6084/m9.figshare.22332394.v1
title: The influence of technological affordances in science journalism in the Global South: A case study of Twitter use in South Africa

description: Data were collected by scraping the Twitter feeds of @Bhekisisa_MG, @Scibraai and @TC_Africa using the Twitter API.v2 tool, specifically the Twitter downloader. Through the scraper, the researcher obtained all of the tweets that mention the accounts since each was opened until the start of the study on 19 August 2022.
DOI: 10.6084/m9.figshare.22332394
title: The influence of technological affordances in science journalism in the Global South: A case study of Twitter use in South Africa

description: Data were collected by scraping the Twitter feeds of @Bhekisisa_MG, @Scibraai and @TC_Africa using the Twitter API.v2 tool, specifically the Twitter downloader. Through the scraper, the researcher obtained all of the tweets that mention the accounts since each was opened until the start of the study on 19 August 2022.
DOI: 10.5281/zenodo.7767320
title: balearica_pavonina_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.7767319
title: balearica_pavonina_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.7269138
title: EvoAug Model Weights

description: This repository provides model weights for analyses in main figures from "Evolution-inspired augmentations improve deep learning for regulatory genomics" by Nicholas Keone Lee, Ziqi (Amber) Tang, Shushan Toneyan, and Peter K Koo.
DOI: 10.5281/zenodo.7277777
title: EvoAug Model Weights

description: This repository provides model weights for analyses in main figures from "Evolution-inspired augmentations improve deep learning for regulatory genomics" by Nicholas Keone Lee, Ziqi (Amber) Tang, Shushan Toneyan, and Peter K Koo.
DOI: 10.5281/zenodo.7767325
title: EvoAug Model Weights and Code

description: This repository provides model weights for analyses in main figures from "EvoAug: improving generalization and interpretability of genomic deep neural networks with evolution-inspired data augmentations" by Nicholas Keone Lee, Ziqi (Amber) Tang, Shushan Toneyan, and Peter K Koo.
DOI: 10.5281/zenodo.7269137
title: EvoAug Model Weights and Code

description: This repository provides model weights for analyses in main figures from "EvoAug: improving generalization and interpretability of genomic deep neural networks with evolution-inspired data augmentations" by Nicholas Keone Lee, Ziqi (Amber) Tang, Shushan Toneyan, and Peter K Koo.
DOI: 10.6084/m9.figshare.22332412
title: Assessment of the level of knowledge about diabetes mellitus among diabetic patients: A cross-sectional study from Nepal

description: This dataset contains English and translated Nepali version of questionnaire, and English and Nepali version of infromed consent form.
DOI: 10.5281/zenodo.7767327
title: nuMIDAS public use cases data

description: This data set contains all public data related to the use cases that were deployed in the nuMIDAS Horizon 2020 project during 2022 an 2023. For reasons of privacy, we have only provided data from the following use cases: UC1 (Pre-planning of shared mobility services) UC2 (Operative areas analysis) UC4 (Planning for parking) UC6 (Assessment of traffic management scenarios) <em>UC3 (Air quality analysis and forecasting) and UC5 (Inflows and outflows in a metropolitan area) are as such not available due to private data.</em> For more information, please refer to the public deliverables at https://www.numidas.eu/.
description: nuMIDAS, the New Mobility Data and Solutions Toolkit, started at the beginning of 2021 under the Horizon 2020 programme and its is being developed by a European Consortium, composed of 9 partners from 6 countries: Belgium, Czech Republic, Greece, Italy, The Netherlands, and Spain: Transport & Mobility Leuven, MAPtm, CERTH-HIT, Factual Consulting, Czech Technical University in Prague, Poliedra (Polytechnic Milano), Àrea Metropolitana de Barcelona, Agenzia Mobilità Ambiente Territorio, and the City of Leuven. The project builds on a distributed selection of case studies in pilot cities to provide a geographic coverage of the EU. The four pilot cities are: Barcelona (Spain), Milan (Italy), Leuven (Belgium), and Thessaloniki (Greece).
DOI: 10.5281/zenodo.7767326
title: nuMIDAS public use cases data

description: This data set contains all public data related to the use cases that were deployed in the nuMIDAS Horizon 2020 project during 2022 an 2023. For reasons of privacy, we have only provided data from the following use cases: UC1 (Pre-planning of shared mobility services) UC2 (Operative areas analysis) UC4 (Planning for parking) UC6 (Assessment of traffic management scenarios) <em>UC3 (Air quality analysis and forecasting) and UC5 (Inflows and outflows in a metropolitan area) are as such not available due to private data.</em> For more information, please refer to the public deliverables at https://www.numidas.eu/.
description: nuMIDAS, the New Mobility Data and Solutions Toolkit, started at the beginning of 2021 under the Horizon 2020 programme and its is being developed by a European Consortium, composed of 9 partners from 6 countries: Belgium, Czech Republic, Greece, Italy, The Netherlands, and Spain: Transport & Mobility Leuven, MAPtm, CERTH-HIT, Factual Consulting, Czech Technical University in Prague, Poliedra (Polytechnic Milano), Àrea Metropolitana de Barcelona, Agenzia Mobilità Ambiente Territorio, and the City of Leuven. The project builds on a distributed selection of case studies in pilot cities to provide a geographic coverage of the EU. The four pilot cities are: Barcelona (Spain), Milan (Italy), Leuven (Belgium), and Thessaloniki (Greece).
DOI: 10.6084/m9.figshare.22332076
title: Philippe et al., 2023 - Molards experiments

description: Supplementary Material to the paper Philippe et al. (2023) - A cost-effective and flexible method for time-lapse Structure from Motion: application to analogue experiments in geomorphology. Contains: DEMs of analogue models; a time-lapse video of the degradation of the model with the radial setup; spreadsheets of volume calculations; spreadsheets of error calculations; the Python code computing radial profiles (Fig. 10).
DOI: 10.6084/m9.figshare.22287853.v1
title: Fpenn609annot.txt

description: Annotation file for the updated Fraxinus pennsylvanica De novo 609 transcriptome assembly generated with the Trinotate pipeline. Pfam, gene ontology (GO), KEGG ontology, BLAST homology, and signal peptide information is given for transcripts returning such information.
DOI: 10.6084/m9.figshare.22287853
title: Fpenn609annot.txt

description: Annotation file for the updated Fraxinus pennsylvanica De novo 609 transcriptome assembly generated with the Trinotate pipeline. Pfam, gene ontology (GO), KEGG ontology, BLAST homology, and signal peptide information is given for transcripts returning such information.
DOI: 10.6084/m9.figshare.8057270
title: Lymphocytes upregulate CD36 in adipose tissue and liver

description: CD36 is a multifunctional scavenger receptor and lipid transporter implicated in metabolic and inflammatory pathologies, as well as cancer progression. CD36 is known to be expressed by adipocytes and monocytes/macrophages, but its expression by T cells is not clearly established. We found that CD4 and CD8 T cells in adipose tissue and liver of humans, monkeys, and mice upregulated CD36 expression (ranging from ~5–40% CD36+), whereas little to no CD36 was expressed by T cells in blood, spleen, and lymph nodes. CD36 was expressed predominantly by resting CD38-, HLA.DR-, and PD-1- adipose tissue T cells in monkeys, and increased during high-fat feeding in mice. Adipose tissue and liver promote a distinct phenotype in resident T cells characterized by CD36 upregulation.
DOI: 10.6084/m9.figshare.8058740
title: Adipocyte abundances of CES1, CRYAB, ENO1 and GANAB are modified <i>in-vitro</i> by glucose restriction and are associated with cellular remodelling during weight regain

description: Long-term weight loss maintenance is a problem of overweight and obesity. Changes of gene expression during weight loss (WL) by calorie restriction (CR) are linked to the risk of weight regain (WR). However, detailed information on genes/proteins involved in the mechanism is still lacking. Therefore, we developed an <i>in-vitro</i> model system for glucose restriction (GR) and refeeding (RF) to uncover proteome differences between GR with RF vs normal feeding, of which we explored the relation with WR after WL. Human Simpson-Golabi-Behmel Syndrome cells were subjected to changing levels of glucose to mimic the condition of CR and RF. Proteome profiling was performed by liquid chromatography tandem mass spectrometry. This <i>in-vitro</i> model revealed 44 proteins differentially expressed after GR and RF versus feeding including proteins of the focal adhesions. Four proteins showed a persistent up- or down-regulation: liver carboxylesterase (CES1), mitochondrial superoxide dismutase [Mn] (SOD2), alpha-crystallin B-chain (CRYAB), alpha-enolase (ENO1). <i>In-vivo</i> weight loss-induced RNA expression changes linked CES1, CRYAB and ENO1 to WR. Moreover, of these 44 proteins, CES1 and glucosidase II alpha subunit (GANAB) during follow up correlated with WR. Correlation clustering of <i>in-vivo</i> protein expression data indicated an interaction of these proteins with structural components of the focal adhesions and cytoplasmic filaments in the adipocytes.
DOI: 10.6084/m9.figshare.11309534
title: Non-obesogenic doses of palmitate disrupt circadian metabolism in adipocytes

description: Saturated fatty acids, such as palmitate, lead to circadian disruption. We aimed at studying the effect of low doses of palmitate on circadian metabolism and to decipher the mechanism by which fatty acids convey their effect in adipocytes. Mice were fed non-obesogenic doses of palm or olive oil and adipocytes were treated with palmitate and oleate. Cultured adipocytes treated with oleate showed increased AMPK activity and induced the expression of mitochondrial genes indicating increased fatty acid oxidation, while palmitate increased ACC activity and induced the expression of lipogenic genes, indicating increased fatty acid synthesis. Low doses of palmitate were sufficient to alter circadian rhythms, due to changes in the expression and/or activity of key metabolic proteins including GSK3β and AKT. Palmitate-induced AKT and GSK3β activation led to the phosphorylation of BMAL1 that resulted in low levels as well as high amplitude of circadian clock expression. In adipocytes, the detrimental metabolic alteration of palmitate manifests itself early on even at non-obesogenic levels. This is accompanied by modulating BMAL1 expression and phosphorylation levels, which lead to dampened clock gene expression.
DOI: 10.6084/m9.figshare.8057270.v2
title: Lymphocytes upregulate CD36 in adipose tissue and liver

description: CD36 is a multifunctional scavenger receptor and lipid transporter implicated in metabolic and inflammatory pathologies, as well as cancer progression. CD36 is known to be expressed by adipocytes and monocytes/macrophages, but its expression by T cells is not clearly established. We found that CD4 and CD8 T cells in adipose tissue and liver of humans, monkeys, and mice upregulated CD36 expression (ranging from ~5–40% CD36+), whereas little to no CD36 was expressed by T cells in blood, spleen, and lymph nodes. CD36 was expressed predominantly by resting CD38-, HLA.DR-, and PD-1- adipose tissue T cells in monkeys, and increased during high-fat feeding in mice. Adipose tissue and liver promote a distinct phenotype in resident T cells characterized by CD36 upregulation.
DOI: 10.6084/m9.figshare.11309534.v1
title: Non-obesogenic doses of palmitate disrupt circadian metabolism in adipocytes

description: Saturated fatty acids, such as palmitate, lead to circadian disruption. We aimed at studying the effect of low doses of palmitate on circadian metabolism and to decipher the mechanism by which fatty acids convey their effect in adipocytes. Mice were fed non-obesogenic doses of palm or olive oil and adipocytes were treated with palmitate and oleate. Cultured adipocytes treated with oleate showed increased AMPK activity and induced the expression of mitochondrial genes indicating increased fatty acid oxidation, while palmitate increased ACC activity and induced the expression of lipogenic genes, indicating increased fatty acid synthesis. Low doses of palmitate were sufficient to alter circadian rhythms, due to changes in the expression and/or activity of key metabolic proteins including GSK3β and AKT. Palmitate-induced AKT and GSK3β activation led to the phosphorylation of BMAL1 that resulted in low levels as well as high amplitude of circadian clock expression. In adipocytes, the detrimental metabolic alteration of palmitate manifests itself early on even at non-obesogenic levels. This is accompanied by modulating BMAL1 expression and phosphorylation levels, which lead to dampened clock gene expression.