cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28399790.v1
title: <b>A Multi-Pathology Ballistocardiogram Dataset for Cardiac Function Monitoring and Arrhythmia Assessment</b>

description: This dataset comprises 153 subfolders within a primary directory named <i>data</i>, derived from 85 participants. Each participant typically contributes 2–3 subfolders, contingent on the completeness and quality of their M-mode echocardiography (UCG) recordings. Subfolder names follow the format: hdata + SubjectID + EJ/XJ/ZJ to denote the specific cardiac region captured in the ultrasound data:EJ denotes M-mode imaging of the mitral valve, XJ denotes M-mode imaging of the left ventricle, and ZJ denotes M-mode imaging of the aortic valve.For instance, a participant with identifier “001” may have subfolders named hdata1EJ, hdata1XJ, and/or hdata1ZJ, corresponding to each available M-mode echocardiographic segment. Each subfolder contains five distinct files, described in detail below.<b>1 BCG J-peak file</b>(1) File name: hdata+subjectID+EJ/XJ/ZJ_BCG.csv(2) Content: J-peak positions in the BCG signal, presented in two columns:(3) The first column provides the raw data point index.(4) The second column specifies the corresponding time (in seconds) for each J-peak.<b>2 ECG R-peak file</b>(1) File name: hdata+subjectID+EJ/XJ/ZJ_ECG.csv(2) Content: R-peak positions in the ECG signal, also in two columns:(3) The first column provides the raw data point index.(4) The second column specifies the corresponding time (in seconds) for each R-peak.<b>3 Ultrasound video</b>(1) File name: hdata+subjectID+EJ/XJ/ZJ_UCG.AVI(2) Content: An AVI-format video of the simultaneously acquired M-mode echocardiogram. The suffix EJ, XJ, or ZJ indicates whether the imaging targeted the mitral valve, left ventricle, or aortic valve, respectively.<b>4 Signal data</b>(1) File name: signal.csv(2) Content: Three columns of time-series data sampled at 100 Hz. Raw BCG signal (Column 1).ECG data (Lead V2 or another designated lead) (Column 2). Denoised BCG signal (Column 3), derived using the Enhanced Singular Value Thresholding (ESVT) algorithm.<b>5 Signal visualization</b>(1) File name: signal.pdf(2) Content: A graphical representation of the signals from signal.csv. This file facilitates quick inspection of waveform alignment and overall signal quality.In addition to the data directory, an Additional_info folder provides participant demographic and clinical details. Each row in subject_info.csv corresponds to an individual participant, listing their ID, sex, weight, height, age, heart rate, ejection fraction(EF) (%). These parameters establish an informative link between each participant’s anthropometric profile, cardiac function metrics, and the corresponding BCG, ECG, and ultrasound data.<br>
DOI: 10.6084/m9.figshare.8001863.v1
title: Dataset for: Simulation and data-generation for random-effects network meta-analysis of binary outcome

description: The performance of statistical methods is frequently evaluated by means of simulation studies. In case of network meta-analysis of binary data, however, available data- generating models are restricted to either inclusion of two-armed trials or the fixed-effect model. Based on data-generation in the pairwise case, we propose a framework for the simulation of random-effect network meta-analyses including multi-arm trials with binary outcome. The only of the common data-generating models which is directly applicable to a random-effects network setting uses strongly restrictive assumptions. To overcome these limitations, we modify this approach and derive a related simulation procedure using odds ratios as effect measure. The performance of this procedure is evaluated with synthetic data and in an empirical example.
DOI: 10.17632/367kty6nw7
title: SFU-HW-Objects-v3

description: A refinement of the SFU-HW-Objects-v2 dataset, with some adjustments to the bounding boxes and annotations.
DOI: 10.17632/7vjfzfj6xf
title: A study of ER-PM tether Syt1 limits cell-to-cell connectivity via plasmodesmata during innate immune responses in Arabidopsis. lijiajing et al.

description: the data of Fig2\FigS8\FigS11H\FigS15 E-F
DOI: 10.17632/bybgyym5rg
title: Dataset for studying the Impact of Timed and Targeted Counselling on the maternal health continuum of care outcomes in Northern Uganda

description: Thics is a prim
DOI: 10.17632/m69zrf98c8
title: Anxiety, depression, ER

description: Database corresponding to a research on the relationship between anxiety and depression symptoms, and emotional regulation.
DOI: 10.25380/iastate.8178938.v2
title: High-throughput sequencing (HTS) data of plasmid library subjected to Cas12a cleavage

description: Cas12a (formerly Cpf1) is an RNA-guided endonuclease in the CRISPR-Cas immune system that can be easily programmed for genome editing. To understand the native cleavage specificity and cleavage activity of Cas12a, we employed high-throughput <i>in vitro</i> cleavage assays using a plasmid library (pLibrary). We tested the cleavage activity of three Cas12a orthologs – FnCas12a, LbCas12a and AsCas12a. For each Cas12a ortholog, we used three different crRNA sequences and corresponding target libraries (pLibrary), referred to as pLibrary PS4, EMX1 and CCR5. The data set is the high-throughput sequencing (HTS) reads of pLibrary subjected to cleavage by different Cas12a orthologs. The README file contains details about the content of the HTS data set, and the key to the file names and corresponding samples.<br> This HTS data set supports the research article: "Pervasive off-target and double-stranded DNA nicking by CRISPR-Cas12a".<br>Version 2: New data set for pLibrary CCR5 uploaded with updated "README" file (v2). <br>
DOI: 10.6084/m9.figshare.25901920.v3
title: Supporting data and code for Mendes et al. 2024 Evidence of a European seed dispersal crisis

description: Supporting data and code for Mendes et al. 202X Evidence of a European seed dispersal crisis<b>Abstract</b>Seed dispersal is crucial for ecosystem persistence, especially in fragmented landscapes, such as those common in Europe. Ongoing defaunation might compromise effective seed dispersal, but the conservation status of pairwise interactions remains unknown. With a literature review, we reconstructed the first European-wide seed dispersal network and evaluated interactions’ conservation status by assessing each interacting partner’s IUCN conservation status and population trends. We found that a third of the disperser species and interactions face potential extinction and that 30% of the plant species have most of their dispersers threatened or declining. While our study clearly reveals a developing seed dispersal crisis across all European biomes, it also highlights large knowledge gaps regarding the dispersers of most European zoochorous plants, as well as their conservation status, urging further scrutiny and action to conserve the seed dispersal service.
DOI: 10.6084/m9.figshare.12660245.v1
title: Gene database of Fusobacterium nucleatum NCTC10562

description: <i>Fusobacterium nucleatum</i> is an oral bacterium that partakes in periodontal disease. This arises from its ability to coaggregate with other bacterial species in the oral cavity in periodontal plaque. Many aspects of the pathogenicity of <i>F. nucleatum</i> remains to be elucidated. This work sought to provide basic information of this bacterium with annotated genome sequence downloaded from Genbank. Comprising gene name, gene function, and gene sequence of all genes in the genome of the bacterium, the database should find use in molecular cloning workflow for <i>in vitro</i> reconstitution of particular pathogenic pathway or generation of loss of function mutants useful for understanding function of genes in pathogenesis of the oral cavity.
DOI: 10.6084/m9.figshare.23550003.v4
title: Dataset for Microbial carbon use efficiency in different ecosystems: a meta-analysis based on a biogeochemical-equilibrium model

description: The data including a total of 197 soil samples from 41 study sites from the published literature covering three types of terrestrial ecosystems (58 farmlands, 95 forests and 44 grasslands) were collected to estimate microbial CUEs across different ecosystems by mata-analysis.
DOI: 10.6084/m9.figshare.25188497.v1
title: Supplementary Material for: Gastric Adenocarcinoma with Enteroblastic Differentiation Resected through Endoscopic Submucosal Dissection: A Case Report

description: <b><i>Introduction:</i></b> Gastric adenocarcinoma with enteroblastic differentiation (GAED) is a rare histological type of gastric adenocarcinoma that occurs in the stomach and is known for its aggressive behavior. GAED is diagnosed histopathologically and is often advanced at the time of diagnosis. <b><i>Case Presentation:</i></b> We report the case of a 70-year-old male with a 20-mm superficial depressed lesion on the anterior wall of the antrum. Histological examination of the endoscopic submucosal dissection specimen revealed that the tumor was composed of dilated or slit-like branching tubules; additionally, the tumor cells had clear cytoplasm resembling that of the fetal digestive tract. Immunohistochemically, the tumor cells were positive for Glypican-3 and alpha-fetoprotein. A pathological diagnosis of GAEDs was established. GAED was found in approximately 30% of all the tumor cells and showed lymphatic invasion. The patient has been under recurrence-free follow-up for approximately 1 year after the endoscopic submucosal dissection. <b><i>Conclusion:</i></b> In order to detect a large number of cases, immunostaining should be aggressively performed if morphological findings are suspicious for GAED.
DOI: 10.6084/m9.figshare.25458979.v1
title: Supplementary Material for: Posterior Uveitis in Ocular-Involving Chronic Lymphocytic Leukemia and the Utility of Negative MYD88 L265P Testing in the Diagnosis

description: Purpose: To investigate if a negative test result for MYD88 L265P mutation, associated with vitreoretinal lymphoma (VRL) and primary CNS lymphoma (PCNSL), in liquid biopsies from intraocular fluids can be a useful adjuvant test to diagnose chronic lymphocytic leukemia in clinically challenging cases.

Design: Observational case series.

Participants: Patients with a past medical history or examinations findings suspicious for intraocular lymphoma.

Methods: We evaluated both vitreous and aqueous humor-derived (AHD) MYD88 L265P mutation from patients that had suspect intraocular lymphoma that warranted a liquid biopsy procedure. Gold-standard cytopathology, flow cytometry, and gene rearrangement studies were also performed.

Main Outcomes: Detection of AHD MYD88 L265P mutation in liquid biopsies.

Results: All four patients had negative AHD MYD88 L265P mutation testing. Gold-standard testing (cytology) either showed paucicellular specimens (1/4) or specimens with high background inflammation (3/4). One case showed a rare B-cell clonal population (CD5+, Kappa-restricted by flow cytometry), but this was not sufficient to make any definitive diagnosis. All patients were subsequently initiated on systemic therapy and had improvement in their disease burden.

Conclusions: Negative AHD MYD88 L265P mutation testing can serve as an adjuvant molecular test to diagnose difficult cases of intraocular CLL.
DOI: 10.17632/skmjcshfhv
title: Impact of Medical and Surgical Treatments on Quality of Life and Pain for Hidradenitis Suppurativa: A Systematic Review and Meta Analysis

description: Supplemental tables and plots.
DOI: 10.6084/m9.figshare.11948904.v7
title: DrugSimDB

description: This is the main DrugSimDB file containing drug-pair information with significant combined similarity measures.
DOI: 10.6084/m9.figshare.12248783.v1
title: Supplementary Material for: Disease Severity Is Associated with Alexithymia in Patients with Atopic Dermatitis

description: <b><i>Background:</i></b> Atopic dermatitis (AD) is a chronic inflammatory skin disorder that is associated with higher rates of psychological disorders, but limited evidence supported the association with alexithymia, a psychoaffective dysfunction. <b><i>Objectives:</i></b> This study was aimed to investigate the occurrence of alexithymia in AD patients, compared to healthy subjects. <b><i>Methods:</i></b> This cross-sectional study assessed AD severity by the Eczema Area and Severity Index (EASI) score, sleeplessness and itch by a numeric rating scale (NRS), and alexithymia by the 20-item Toronto Alexithymia Scale (TAS-20) score. The association between disease characteristics and alexithymia was evaluated through several logistic regression models. <b><i>Results:</i></b> 202 AD patients and 240 healthy subjects were included in this study. The alexithymic personality trait (TAS-20 ≥51) was more frequently observed among AD patients compared to the control group (62.4% [126/202] vs. 29.2% [70/240], <i>p</i> &lt; 0.0001). In particular, alexithymia (TAS-20 score ≥61) was detected in a significantly higher number of AD patients than in the controls (27.7% [56/202] vs. 7.5% [18/240]; <i>p</i> &lt; 0.0001), whereas borderline alexithymia was detected in 34.6% (70/202) of AD patients compared to 21.7% of healthy controls. Alexithymia was more common among severe AD patients (43.6%) compared to mild AD patients (15.6%) and correlated with itch intensity and sleep disturbances. Among clinical variables, ordered logistic regression analyses revealed disease severity as predictor of alexithymia. Indeed, univariate analysis showed EASI score, sleep NRS, and itch NRS being significantly associated with alexithymia, while a multivariate model identified increased EASI score values as predicting factor. <b><i>Conclusion:</i></b>This study described alexithymia in AD patients correlating its occurrence with clinical AD severity markers (EASI score, itch, and sleeplessness) and identifying the increase in EASI score as predicting factor.
DOI: 10.6084/m9.figshare.16895686.v1
title: November 2020 Covid-19 + Vaccines Twitter Streaming Dataset

description: The file contains Tweet IDs* for COVID-19 related tweets collected in <b>November, 2020</b> from <b>Twitter's COVID-19 Streaming Endpoint </b>via a custom script developed by the <b>Social Media Lab (https://socialmedialab.ca/)</b>.<br>Visit <b>our interactive dashboard at https://stream.covid19misinfo.org</b>/ for a preview and some general stats about this COVID-19 Twitter streaming dataset.<br>For more info about <b>Twitter's COVID-19 Streaming Endpoint</b>, visit <b>https://developer.twitter.com/en/docs/labs/covid19-stream/overview</b><br><b>Note</b>: In accordance with Twitter API Terms, the dataset only includes Tweet IDs (as opposed to the actual tweets and associated metadata). To recollect tweets contained in this dataset, you can use programs such as Hydrator (https://github.com/DocNow/hydrator/) or the Python library Twarc (https://github.com/DocNow/twarc/).
DOI: 10.6084/m9.figshare.28876910.v1
title: Dataset of Baodao Peak in the Dabie Mountains

description: Based on eddy-covariance and meterological observations from November 2020 to November 2021, this dataest investigates the carbon-energy-water dynamics of a representative subtropical forest of the Central Yangtze River Basin experiencing great environmental variability.
DOI: 10.6084/m9.figshare.5436025.v1
title: Music.Traditional.HinduRaga.MIDI

description: A collection of pieces of polyphonic music MIDI coded. This group is specifically for Traditional Hindu music. These files are intended to hear the actual sound of each piece of music. The text files behind these sonic files are analyzed and results are presented in DOI: 10.6084/m9.figshare.5435953 . You won't be able to directly ear music from these files. But you can download and open them with an audio-player software. To see the text representing the music you ear, open the file pretending it is a text-file.
DOI: 10.17632/g7tcwvshff
title: Rice Leaf and Crop Disease Detection Dataset

description: Abstract
This dataset is curated to support the detection and classification of common diseases affecting rice crops, as well as identifying healthy samples. The dataset includes diverse classes and was specifically developed to advance machine learning applications in agricultural disease detection. It provides a valuable resource for researchers seeking to enhance precision farming and crop health monitoring.
Data Summary

o Total Samples: 10766
2. Raw Data:
o Disease Dataset: 2508 samples, including:
 Bacterial Leaf Blight: 262
 Rice Blast: 592
 Tungro: 298
 Healthy Leaf: 771
 Rice: 585
3. Augmented Data:
o Disease Dataset: 8258 samples, including:
 Bacterial Leaf Blight: 716
 Rice Blast: 2,751
 Tungro: 3,447
 Healthy Leaf: 601
 Rice: 743
Purpose
The Rice Leaf and Crop Disease Detection Dataset is a versatile resource for machine learning applications in agriculture. It is particularly suited for training image-based models, such as Convolutional Neural Networks (CNNs), to:
• Detect and classify diseases such as Bacterial Leaf Blight, Rice Blast, and Tungro.
• Differentiate between healthy and diseased rice leaves.
• Recognize general rice crop features.
This dataset facilitates:
• Automated Disease Detection: Streamlining monitoring processes in rice cultivation.
• Early Intervention Strategies: Enabling timely responses to prevent yield losses.
• Enhanced Model Development: Providing a robust dataset for training image-based classifiers.
By fostering precision agriculture practices, this dataset aims to support sustainable farming and the adoption of AI-driven solutions for crop health management.
DOI: 10.6084/m9.figshare.7387130.v5
title: Generic Object Decoding

description: Here we provide preprocessed fMRI data and image features from Horikawa & Kamitani (2017) Generic decoding of seen and imagined objects using hierarchical visual features. Nat Commun.<br><br>Raw (unpreprocessed) fMRI data are available at OpenNeuro.<br><br>Analysis demo code is available at GitHub.<br><br>History:<br><br>2020-07-27 'category_index' and 'image_index' in fMRI data files (Subject*.h5) were fixed.<br><br>2019-05-08 fMRI data mat files were replaced with h5 files.<br><br>
DOI: 10.17632/48y5wj8jhg
title: Figure 7 for "Elevated levels of the sphingolipid MIPC disrupt the coordination of cell growth with cell wall formation in fission yeast"

description: Cells with disrupted glycosylation but not GPI anchor addition phenocopy css1-3
DOI: 10.17632/hcyxdsgrg3
title: Raw data for "Effect of column length on water infiltration into hydrophobic porous media"

description: Raw data for "Effect of column length on water infiltration into hydrophobic porous media"
DOI: 10.6084/m9.figshare.28462769.v1
title: Mexico's High Resolution Climate Database (MexHiResClimDB): monthly average temperature data for Mexico.

description: Monthly average of average temperature for Mexico at a resolution of 20 arc-seconds for the 1951-2020 period. The data are distributed as GeoTiffs in geographical coordinates with each file containing the twelve months of each year.
DOI: 10.6084/m9.figshare.7054442.v1
title: TABLE S2. PCA LOADINGS AND EIGENVALUES FOR MORPHOMETRIC ANALYSES from Unexpected diversity within the extinct elephant birds (Aves: Aepyornithidae) and a new identity for the world's largest bird

description: Madagascar's now-extinct radiation of large-bodied ratites, the elephant birds (Aepyornithidae), has been subject to little modern research compared to the island's mammalian megafauna and other Late Quaternary giant birds. The family's convoluted and conflicting taxonomic history has hindered accurate interpretation of morphological diversity and has restricted modern research into their evolutionary history, biogeography and ecology. We present a new quantitative analysis of patterns of morphological diversity of aepyornithid skeletal elements, including material from all major global collections of aepyornithid skeletal remains, and constituting the first taxonomic reassessment of the family for over 50 years. Linear morphometric data collected from appendicular limb elements, and including nearly all type specimens, were examined using multivariate cluster analysis and the Bayesian Information Criterion, and with estimation of missing data using multiple imputation and expectation maximization algorithms. These analyses recover three distinct skeletal morphotypes within the Aepyornithidae. Two of these morphotypes are associated with the type specimens of the existing genera <i>Mullerornis</i> and <i>Aepyornis</i>, and represent small-bodied and medium-bodied aepyornithids, respectively. <i>Aepyornis</i> contains two distinct morphometric subgroups, which are identified as the largely allopatric species <i>A. hildebrandti</i> and <i>A. maximus.</i> The third morphotype, which has not previously been recognized as a distinct genus, is described as the novel taxon <i>Vorombe titan</i>. <i>Vorombe</i> represents the largest-bodied aepyornithid and is the world's largest bird, with a mean body mass of almost 650 kg. This new taxonomic framework for the Aepyornithidae provides an important new baseline for future studies of avian evolution and the Quaternary ecology of Madagascar.
DOI: 10.17608/k6.auckland.5808855.v1
title: Equine bone mineral density files

description: Text file lists of greyscale values from CT DICOM files. To be used in conjunction with the STL surface files
DOI: 10.17632/d8gvm96ykm
title: Data for: "A scientometric review of permafrost research based on textual analysis (1948-2020)"

description: This dataset contains data used for a scientometric study of permafrost litterature. 5 csv files are available for download: - main_corpus_EID_DOI.csv contains Scopus EID and DOI if available of the 16,249 bibliographic records of the main corpus - Factiva_corpus_accession_numbers.csv contains the accession number for the 4,645 press articles used to built a terms list of infrastructures - corpus_for_soil_properties_extraction.csv contains Scopus EID and DOI if available of the 51 bibliographic records used to built a terms list of soil properties - terms_list_infrastructure.csv is the list of terms denoting an infrastructure or a civil engineering concept - terms_list_soil_properties.csv is the list of terms denoting soil properties