cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30681534.v1
title: Additional file 1 of Bioinformatic analysis and validation of candidate genes in the eutopic endometrium reveal differential expressions in diffuse adenomyosis, endometrioma, and their co-existence

description: Supplementary material 1. Fig. S1. Workflow of the study design. The left panel in the image represents bioinformatic analysis of transcriptomic datasets on adenomyosis, endometriosis and controls. The right panel shows the patient recruitment criteria for validation of the bioinformatic findings. GEO: Gene Expression Omnibus, BMI: body mass index, MUSA: Morphological Uterus Sonographic Assessment, TVUS: transvaginal ultrasound, qRT-PCR: quantitative reverse transcription polymerase chain reaction. Fig. S2. Box plots for the adenomyosis and endometriosis datasets. Box plots demonstrate the distribution of normalized datasetsadenomyosis vs. healthy subjectsfrom GSE78851 datasetadenomyosis vs. healthy subjectsfrom GSE7307 dataset andendometriosis vs. healthy subjectsfrom the GSE7307 dataset. X and Y-axis represent the patients selected and their gene expression levels, respectively.Fig. S3. Representative transvaginal ultrasoundimages of patients.adenomyosis with asymmetric myometrial thickening, irregular endometrial–myometrial junctionmyometrial cystand heterogeneous myometriumendometriomaco-existent adenomyosis–endometriosis showing asymmetric myometrial wallscontrol with uniform endometrium–myometrium thickness Fig. S4. Full blots of the proteins of interest. The blots consist of four lanes showing four groups of patients: Adenomyosis- A, co-existent adenomyosis–endometriosis- AE, endometriosis- E and controls- C. The ladder showing the corresponding molecular weights are shown.-The blots showing the bands of target proteins and-showing the bands of beta-actin
DOI: 10.6084/m9.figshare.30681548
title: Additional file 1 of Model for compassion fatigue onset in cancer care nurses: focusing on patient traumatic events and nurses’ cognitive reactions

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30681548.v1
title: Additional file 1 of Model for compassion fatigue onset in cancer care nurses: focusing on patient traumatic events and nurses’ cognitive reactions

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30681575
title: Additional file 6 of Development and clinical application of a rapid qPCR instrument featuring three independent temperature modules and a time-based algorithm for respiratory pathogen diagnosis

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.30681575.v1
title: Additional file 6 of Development and clinical application of a rapid qPCR instrument featuring three independent temperature modules and a time-based algorithm for respiratory pathogen diagnosis

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.30681612
title: Additional file 2 of Newborn genetic screening of congenital adrenal hyperplasia using long-read sequencing

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30681612.v1
title: Additional file 2 of Newborn genetic screening of congenital adrenal hyperplasia using long-read sequencing

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30681615
title: Additional file 3 of Newborn genetic screening of congenital adrenal hyperplasia using long-read sequencing

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.30681615.v1
title: Additional file 3 of Newborn genetic screening of congenital adrenal hyperplasia using long-read sequencing

description: Supplementary Material 3
DOI: 10.15468/dl.v7x885
title: Occurrence Download

description: A dataset containing 86717 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "TaxonKey is Rubiaceae"
 ]
}

 The dataset includes 86717 records from 249 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003150-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30681614
title: Additional file 1 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 1. Comparison of gene annotations among pig, human and mouse species. Table representing the number, percentage and average number of annotated genes among the pig, human and mouse species.
DOI: 10.6084/m9.figshare.30681614.v1
title: Additional file 1 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 1. Comparison of gene annotations among pig, human and mouse species. Table representing the number, percentage and average number of annotated genes among the pig, human and mouse species.
DOI: 10.6084/m9.figshare.30681620
title: Additional file 3 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 3. List of the biomarker genes of intestinal epithelial cells. Table representing the biomarkers used in this study and the accession numbers of their transcripts. For each biomarker, a reference is included.
DOI: 10.6084/m9.figshare.30681620.v1
title: Additional file 3 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 3. List of the biomarker genes of intestinal epithelial cells. Table representing the biomarkers used in this study and the accession numbers of their transcripts. For each biomarker, a reference is included.
DOI: 10.6084/m9.figshare.30681626
title: Additional file 5 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 5. Table of log(1+FPKM) values of the transcripts encoding solute carrier proteins (SLCs) in piglet jejunums, crypts, 3D organoids at passages 5, 14 and 25, 2D organoids and ST cells. The average of the log base e of 1+FPKM values was calculated for each model.
DOI: 10.6084/m9.figshare.30681626.v1
title: Additional file 5 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 5. Table of log(1+FPKM) values of the transcripts encoding solute carrier proteins (SLCs) in piglet jejunums, crypts, 3D organoids at passages 5, 14 and 25, 2D organoids and ST cells. The average of the log base e of 1+FPKM values was calculated for each model.
DOI: 10.6084/m9.figshare.30681629
title: Additional file 6 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 6. Table of the log2 (FPKM) values calculated for each noninfected experimental model. For each model—ST cells, piglet jejunums, 3D organoids (5th, 14th and 25th passages) and 2D organoids—the FPKM values were calculated and are displayed in this table.
DOI: 10.6084/m9.figshare.30681629.v1
title: Additional file 6 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 6. Table of the log2 (FPKM) values calculated for each noninfected experimental model. For each model—ST cells, piglet jejunums, 3D organoids (5th, 14th and 25th passages) and 2D organoids—the FPKM values were calculated and are displayed in this table.
DOI: 10.6084/m9.figshare.30681632
title: Additional file 7 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 7. The determination coefficient (R2) values were calculated on the basis of the DESeq2 normalized counts transformed into log2(1+normalized counts) and log2(1+FPKM) values. To compare gene and transcript expression, the R² between the respective R2 values was calculated and is represented in the graphic
DOI: 10.6084/m9.figshare.30681632.v1
title: Additional file 7 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 7. The determination coefficient (R2) values were calculated on the basis of the DESeq2 normalized counts transformed into log2(1+normalized counts) and log2(1+FPKM) values. To compare gene and transcript expression, the R² between the respective R2 values was calculated and is represented in the graphic
DOI: 10.6084/m9.figshare.30681638
title: Additional file 9 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 9. Table of the Gene Ontology analysis results affiliated with each comparison between uninfected experimental models. After the calculation of log2(FPKM) values for each noninfected experimental model, a Gene Ontology analysis was performed for the shared and specific transcripts. The corresponding enrichment tables are displayed in each sheet of the table.
DOI: 10.6084/m9.figshare.30681638.v1
title: Additional file 9 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 9. Table of the Gene Ontology analysis results affiliated with each comparison between uninfected experimental models. After the calculation of log2(FPKM) values for each noninfected experimental model, a Gene Ontology analysis was performed for the shared and specific transcripts. The corresponding enrichment tables are displayed in each sheet of the table.
DOI: 10.6084/m9.figshare.30681647
title: Additional file 12 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 12. Table representing the log2-fold changes in genes implicated in the morphology of the epithelium. The log2-fold changes in genes implicated in the morphology of the intestinal epithelium were calculated between 3D organoids at the 25th passage, 2D organoids or crypts and piglet jejunums. The values are displayed in this table.
DOI: 10.6084/m9.figshare.30681647.v1
title: Additional file 12 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 12. Table representing the log2-fold changes in genes implicated in the morphology of the epithelium. The log2-fold changes in genes implicated in the morphology of the intestinal epithelium were calculated between 3D organoids at the 25th passage, 2D organoids or crypts and piglet jejunums. The values are displayed in this table.
DOI: 10.6084/m9.figshare.30681659
title: Additional file 16 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 16. Gene Ontology analysis results for each infected experimental model. The log2-fold change was calculated for each experimental model (ST cells, piglet jejunums and 2D organoids) between control and infected conditions. A gene was considered to be differentially expressed when its adjusted P value was less than 0.05 and its log2-fold change was either greater than 1 (upregulated) or less than -1 (downregulated). After classification, a Gene Ontology analysis was performed for these genes, and the results are displayed in this table, with each sheet representing the analysis of a different gene set.
DOI: 10.6084/m9.figshare.30681659.v1
title: Additional file 16 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 16. Gene Ontology analysis results for each infected experimental model. The log2-fold change was calculated for each experimental model (ST cells, piglet jejunums and 2D organoids) between control and infected conditions. A gene was considered to be differentially expressed when its adjusted P value was less than 0.05 and its log2-fold change was either greater than 1 (upregulated) or less than -1 (downregulated). After classification, a Gene Ontology analysis was performed for these genes, and the results are displayed in this table, with each sheet representing the analysis of a different gene set.
DOI: 10.6084/m9.figshare.30681671
title: Additional file 20 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 20. Expression of genes implicated in innate immunity and the control of gene expression in noninfected models. The average of DESeq2-normalized counts transformed into logs was calculated for the control condition of the ST cells, piglet jejunums and 2D organoids. The first and second sheets display the activation and inhibition of the immune innate system, respectively. The third sheet presents the values for the genes involved in the control of gene expression.
DOI: 10.6084/m9.figshare.30681671.v1
title: Additional file 20 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

description: Additional file 20. Expression of genes implicated in innate immunity and the control of gene expression in noninfected models. The average of DESeq2-normalized counts transformed into logs was calculated for the control condition of the ST cells, piglet jejunums and 2D organoids. The first and second sheets display the activation and inhibition of the immune innate system, respectively. The third sheet presents the values for the genes involved in the control of gene expression.
DOI: 10.6084/m9.figshare.30681692
title: Additional file 1 of First report of VGSC mutations for resistance to synthetic pyrethroids in brown dog ticks (Rhipicephalus sanguineus sensu stricto) from Brazil

description: Additional file 1: Tables S1, S2, and S3.Genotypes generated for ten Rhipicephalus sanguineus sensu stricto ticks from Restinga, Brazil.
DOI: 10.6084/m9.figshare.30681692.v1
title: Additional file 1 of First report of VGSC mutations for resistance to synthetic pyrethroids in brown dog ticks (Rhipicephalus sanguineus sensu stricto) from Brazil

description: Additional file 1: Tables S1, S2, and S3.Genotypes generated for ten Rhipicephalus sanguineus sensu stricto ticks from Restinga, Brazil.
DOI: 10.6084/m9.figshare.30681705
title: Additional file 1 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 1. Supplementary Table 1. DEGs in WT barley plants in response to Cd treatment
DOI: 10.6084/m9.figshare.30681705.v1
title: Additional file 1 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 1. Supplementary Table 1. DEGs in WT barley plants in response to Cd treatment
DOI: 10.6084/m9.figshare.30681708
title: Additional file 2 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 2. Supplementary Table 2.DEGs in hvd14.d barley plants in response to Cd treatment.
DOI: 10.6084/m9.figshare.30681708.v1
title: Additional file 2 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 2. Supplementary Table 2.DEGs in hvd14.d barley plants in response to Cd treatment.
DOI: 10.6084/m9.figshare.30681711.v1
title: Additional file 3 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 3. Supplementary Table 3. Genotype-specific and shared DEGs in shoot and root of WT and hvd14.d barley in response to Cd treatment.
DOI: 10.6084/m9.figshare.30681714
title: Additional file 4 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 4. Supplementary Table 4. TFs and their binding site prediction in promoter regions of Cd-responsive genes in WT and hvd14.d barley
DOI: 10.6084/m9.figshare.30681714.v1
title: Additional file 4 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 4. Supplementary Table 4. TFs and their binding site prediction in promoter regions of Cd-responsive genes in WT and hvd14.d barley
DOI: 10.6084/m9.figshare.30681711
title: Additional file 3 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 3. Supplementary Table 3. Genotype-specific and shared DEGs in shoot and root of WT and hvd14.d barley in response to Cd treatment.
DOI: 10.6084/m9.figshare.30681717
title: Additional file 5 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 5. Supplementary Table 5. TFs that regulate barley response to Cd in SL-dependent and SL-independent manner
DOI: 10.6084/m9.figshare.30681717.v1
title: Additional file 5 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 5. Supplementary Table 5. TFs that regulate barley response to Cd in SL-dependent and SL-independent manner
DOI: 10.6084/m9.figshare.30681720
title: Additional file 6 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 6. Supplementary Table 6.DEGs in WT barley plants in response to Zn treatment
DOI: 10.6084/m9.figshare.30681720.v1
title: Additional file 6 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 6. Supplementary Table 6.DEGs in WT barley plants in response to Zn treatment
DOI: 10.6084/m9.figshare.30681723
title: Additional file 7 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: DEGs in hvd14.d barley plants in response to Zn treatment.
DOI: 10.6084/m9.figshare.30681723.v1
title: Additional file 7 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: DEGs in hvd14.d barley plants in response to Zn treatment.
DOI: 10.6084/m9.figshare.30681726
title: Additional file 8 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 8. Supplementary Table 8. Genotype-specific and shared DEGs in shoot and root of WT and hvd14.d barley in response to Zn treatment.
DOI: 10.6084/m9.figshare.30681726.v1
title: Additional file 8 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 8. Supplementary Table 8. Genotype-specific and shared DEGs in shoot and root of WT and hvd14.d barley in response to Zn treatment.
DOI: 10.6084/m9.figshare.30681729
title: Additional file 9 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 9. Supplementary Table 9. TFs and their binding site prediction in promoter regions of Zn-responsive genes in WT and hvd14.d barley
DOI: 10.6084/m9.figshare.30681729.v1
title: Additional file 9 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 9. Supplementary Table 9. TFs and their binding site prediction in promoter regions of Zn-responsive genes in WT and hvd14.d barley
DOI: 10.6084/m9.figshare.30681732
title: Additional file 10 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 10. Supplementary Table 10. TFs that regulate barley response to Zn in SL-dependent and SL-independent manner
DOI: 10.6084/m9.figshare.30681732.v1
title: Additional file 10 of Dissecting the role of strigolactone perception in barley tolerance to cadmium or zinc stress based on the receptor mutant analysis

description: Supplementary Material 10. Supplementary Table 10. TFs that regulate barley response to Zn in SL-dependent and SL-independent manner
DOI: 10.6084/m9.figshare.30681792.v1
title: Additional file 6 of Tardigrade communities in pristine, drained and restored pine mire forests

description: Supplementary Material 6. Data for Hmsc-models.
DOI: 10.6084/m9.figshare.30681786
title: Additional file 4 of Tardigrade communities in pristine, drained and restored pine mire forests

description: Supplementary Material 4. Posterior median and posterior probability; List of the identified tardigrade genera; List of the moss types in samples.
DOI: 10.6084/m9.figshare.30681786.v1
title: Additional file 4 of Tardigrade communities in pristine, drained and restored pine mire forests

description: Supplementary Material 4. Posterior median and posterior probability; List of the identified tardigrade genera; List of the moss types in samples.
DOI: 10.6084/m9.figshare.30681792
title: Additional file 6 of Tardigrade communities in pristine, drained and restored pine mire forests

description: Supplementary Material 6. Data for Hmsc-models.
DOI: 10.6084/m9.figshare.30681795
title: Additional file 7 of Tardigrade communities in pristine, drained and restored pine mire forests

description: Supplementary Material 7. Script for model definition and model fitting.
DOI: 10.6084/m9.figshare.30681795.v1
title: Additional file 7 of Tardigrade communities in pristine, drained and restored pine mire forests

description: Supplementary Material 7. Script for model definition and model fitting.
DOI: 10.6084/m9.figshare.30681797
title: Additional file 1 of Genome-wide association study of Asian women identifies putative mammographic density-associated loci

description: Supplementary Material 1.