cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e108641
title: Baseline to Measure Opportunity to Learn and Academic Language exposure of Teachers’ instruction in Numeracy and Literacy

description: This study intends to measure a baseline of teachers’ opportunity to learn (OTL) and academic language exposure (ALE) of children in kindergarten and primary levels. In the survey, teachers reported on their instructional practices in a contextualized setting in their classroom. Further observations were carried out during demonstrative sessions. The data obtained were used to investigate basic psychometric properties of this survey: specifically, (a) the distinctness of OTL and ALE or overlapping characteristics in literacy and numeracy instruction. (b) the match between information reported by teachers in the survey as well as those collected during the classroom observation. Measured simultaneously was the CBI to assess teachers’ performance using Ghana’s contextualized assessment methods.
description: Response Rates: The 29 teachers who responded to the survey out of 32 identified teachers
description: SamplingThe sample was drawn from a population of schools under the targeted areas in the eastern region. A subset of nursery and primary teachers were further recruited for the purpose of this study. The schools are classified constitute the Zone of Influence (ZOI) of ZE-LEAP. Sample Size Calculation In selecting a sample size representative of the population of the ZOI, the formula of ss=(Z^2*(¿)*(1-¿))/¿^2 Where:<br>Z = Z value (1.96 selected for 95% confidence level ) p = percentage picking a choice, (.06 used for sample size needed)c = confidence interval A confidence level of 95% (Z-value of 1.96) with a corresponding confidence interval (c) of 0.06 resulted in a sample of 25 respondents. However, to accommodate non-responses, an additional 10% sample were further culminating to a sample of 29 respondents. <br>
description: Qualified teachers in Primary Schools in Eastern Region of Ghana<br>Students in schools located in slums of eastern region of Ghana. Smallest Geographic Unit: Individual teacher
description: coded on-site observation; face-to-face interview; on-site questionnaire;
DOI: 10.6084/m9.figshare.13675816
title: Data, process documentation and plotting routines for figures in "Advancing Artificial Neural Network Parameterisation for Atmospheric Turbulence using a Variational Multiscale Model"

description: This publication contains the data, process overview, analysis code and plotting routines that underpin the manuscript "Advancing Artificial Neural Network Parameterisation for Atmospheric Turbulence using a Variational Multiscale Model", submitted to the Journal of Advances in Modeling Earth Systems. The data is organised in two sub-directories: One for the Python scripts that make up the process pipeline of the study, and one for reconstructing the figures in the manuscript, with each folder containing the Python code and uncompressed simulation output data required to reproduce each figure.
DOI: 10.6084/m9.figshare.14396168
title: Data set for data presented in "Vaccination by two DerG LEAPS conjugates incorporating distinct proteoglycan (PG, aggrecan) epitopes provides therapy by different immune mechanisms in a mouse model of rheumatoid arthritis"

description: This data set contains the data presented in "Vaccination by two DerG LEAPS conjugates incorporating distinct proteoglycan (PG, aggrecan) epitopes provides therapy by different immune mechanisms in a mouse model of rheumatoid arthritis". Additional information, such as context, interpretation, and methodology can be found within this paper. Paper is currently being considered for publication. Reference to paper will be provided when available<br>
DOI: 10.6084/m9.figshare.14396168.v1
title: Data set for data presented in "Vaccination by two DerG LEAPS conjugates incorporating distinct proteoglycan (PG, aggrecan) epitopes provides therapy by different immune mechanisms in a mouse model of rheumatoid arthritis"

description: This data set contains the data presented in "Vaccination by two DerG LEAPS conjugates incorporating distinct proteoglycan (PG, aggrecan) epitopes provides therapy by different immune mechanisms in a mouse model of rheumatoid arthritis". Additional information, such as context, interpretation, and methodology can be found within this paper. Paper is currently being considered for publication. Reference to paper will be provided when available<br>
DOI: 10.25739/fhr4-cx67
title: Carolyn_Lawrence_Dill_GOMAP_Solanum_pennellii_Bolger2014.v1_April_2021.r1

description: This dataset generated by GOMAP is a high-coverage and reproducible functional annotation set based on Gene Ontology (GO) term assignments that covers 96% of the protein coding gene models in the Solanum pennellii genome annotation (published in https://doi.org/10.1038/ng.3046 in September 2014) with a median of 8 annotations per gene model. It was created in April of 2021.
DOI: 10.25678/00038y
title: Data for: Environmental risk of pesticides for fish in small- and medium-sized streams of Switzerland

description: This study assessed the acute and chronic risk of pesticides, singly and as mixtures, for fish using comprehensive chemical data of four monitoring studies conducted in small- and medium-sized streams of Switzerland between 2012 and 2018. Pesticides were ranked based on single substance risk quotients and relative contribution to mixture risk. Concentrations of the pyrethroid insecti-cides, λ-cyhalothrin, cypermethrin and deltamethrin, and the fungicides, carbendazim and fenpropimorph, posed acute or chronic single substance risks. Risk quotients of eighteen addi-tional pesticides were equal or greater than 0.1, and thirteen of those contributed ≥30% to mixture risk. Relatively few substances dominated the mixture risk in most water samples, with chronic and acute maximum cumulative ratios never exceeding 5 and 7, respectively. A literature review of toxicity data showed that concentrations of several pesticides detected in Swiss streams were sufficient to cause direct sublethal effects on fish in laboratory studies. Based on the results of our study, we conclude that pesticides detected in Swiss streams, especially pyrethroid insecticides, fungicides and pesticide mixtures, pose a risk to fish health and can cause direct sublethal effects at environmental concentrations. Sensitive life stages of species with highly specialized life histo-ry traits may be particularly vulnerable; however, the lack of toxicity data for non-model species currently prevents a conclusive assessment across species.
DOI: 10.25739/zh2v-4p15
title: Carolyn_Lawrence_Dill_GOMAP_Solanum_lycopersicum_ITAG4.1.v1_April_2021.r1

description: This dataset generated by GOMAP is a high-coverage and reproducible functional annotation set based on Gene Ontology (GO) term assignments that covers 97% of the protein coding gene models in the ITAG4.1 Solanum lycopersicum genome annotation (made available in January 2020, based on the SL4.0 assembly from September 2019, https://www.biorxiv.org/content/10.1101/767764v1) with a median of 9 annotations per gene model. It was created in April of 2021.
DOI: 10.5281/zenodo.4677512
title: A first genetic assessment of the newly introduced Isle Royale Gray Wolves (Canis lupus)

description: A first genetic assessment of the newly introduced Isle Royale Gray Wolves (Canis lupus)<br> Samuel D. Hervey, Linda Y. Rutledge, Brent R. Patterson, Mark C. Romanski, John A. Vucetich, Jerrold L. Belant, Dean E. Beyer, Jr., and Kristin E. Brzeski HERVEY2021_SupplementaryFigures&Tables.docx<br> &gt;&gt;&gt;&gt;word document containing the referenced supplementary figures and tables from the main text <br> HERVEY2021_Microsatellites_ISRO&ReferenceSamples.csv<br> &gt;&gt;comma-delimited file with genotypes for each of the canid samples used for both population structure and genetic diversity estimates of Isle Royale founders and to inform the agent-based models assigned genotypes<br> ID = Identifier of canid sample<br> Location = Geographic region of canid sample<br> Species = Species assignment of canid sample<br> NOTE: All remaining columns represent each locus ID followed by "-1" or "-2" indicating the first or second allele of the genotype<br> NOTE: Empty cells ("-9") represent missing genotypes <br> HERVEY2021_ODD.docx<br> &gt;&gt;word document containing the full description of the agent-based model found in the main text as well as additional parameters that can be used to simulate alternative scenarios <br> HERVEY2021_ISROnetlogo.nlogo<br> &gt;&gt;netlogo file containing the agent-based model required for running all simulations of observed heterozygosity and inbreeding projections of the Isle Royale population<br> NOTE: A description of the model can be found in the Overview, Design Concepts, and Detail ("HERVEY2021_ODD.docx") supplementary file<br> NOTE: To run the agent-based simulation with multiple replicates and/or multiple treatments (e.g. migration = 0.0, 0.5, 1.0 with 100 replicates each) navigate to Tools&gt;BehaviorSpace. <br> You will also find on this specific file the saved parameters for recreating Figure 4 from the main text, Figure 2 from the ODD, and Figure 3 from the ODD. <br> HERVEY2021_Reformatting_Netlogo_Output.R<br> &gt;&gt;R script file containing code for both reformatting the ouput file from Netlogo (if "data-ouput?" is set to On) and how to use R package 'pedigree' to calculate inbreeding coefficients
DOI: 10.5281/zenodo.4677511
title: A first genetic assessment of the newly introduced Isle Royale Gray Wolves (Canis lupus)

description: A first genetic assessment of the newly introduced Isle Royale Gray Wolves (Canis lupus)<br> Samuel D. Hervey, Linda Y. Rutledge, Brent R. Patterson, Mark C. Romanski, John A. Vucetich, Jerrold L. Belant, Dean E. Beyer, Jr., and Kristin E. Brzeski HERVEY2021_SupplementaryFigures&Tables.docx<br> &gt;&gt;&gt;&gt;word document containing the referenced supplementary figures and tables from the main text <br> HERVEY2021_Microsatellites_ISRO&ReferenceSamples.csv<br> &gt;&gt;comma-delimited file with genotypes for each of the canid samples used for both population structure and genetic diversity estimates of Isle Royale founders and to inform the agent-based models assigned genotypes<br> ID = Identifier of canid sample<br> Location = Geographic region of canid sample<br> Species = Species assignment of canid sample<br> NOTE: All remaining columns represent each locus ID followed by "-1" or "-2" indicating the first or second allele of the genotype<br> NOTE: Empty cells ("-9") represent missing genotypes <br> HERVEY2021_ODD.docx<br> &gt;&gt;word document containing the full description of the agent-based model found in the main text as well as additional parameters that can be used to simulate alternative scenarios <br> HERVEY2021_ISROnetlogo.nlogo<br> &gt;&gt;netlogo file containing the agent-based model required for running all simulations of observed heterozygosity and inbreeding projections of the Isle Royale population<br> NOTE: A description of the model can be found in the Overview, Design Concepts, and Detail ("HERVEY2021_ODD.docx") supplementary file<br> NOTE: To run the agent-based simulation with multiple replicates and/or multiple treatments (e.g. migration = 0.0, 0.5, 1.0 with 100 replicates each) navigate to Tools&gt;BehaviorSpace. <br> You will also find on this specific file the saved parameters for recreating Figure 4 from the main text, Figure 2 from the ODD, and Figure 3 from the ODD. <br> HERVEY2021_Reformatting_Netlogo_Output.R<br> &gt;&gt;R script file containing code for both reformatting the ouput file from Netlogo (if "data-ouput?" is set to On) and how to use R package 'pedigree' to calculate inbreeding coefficients
DOI: 10.5281/zenodo.4677510
title: S-palmitoylation of synaptic proteins as a novel mechanism underlying sex-dependent differences in neuronal plasticity

description: Supplemental Figures and Tables
DOI: 10.6084/m9.figshare.13147862.v2
title: Supplemental Table S1

description: Supplemental Table S1 for "Keeping up with the <i>Bacillus cereus </i>group: taxonomy through the genomics era and beyond"
DOI: 10.6084/m9.figshare.13147862
title: Supplemental Table S1

description: Supplemental Table S1 for "Keeping up with the <i>Bacillus cereus </i>group: taxonomy through the genomics era and beyond"
DOI: 10.6084/m9.figshare.13147862.v3
title: Supplemental Table S1

description: Supplemental Table S1 for "Keeping up with the <i>Bacillus cereus </i>group: taxonomy through the genomics era and beyond"
DOI: 10.6084/m9.figshare.14396252.v1
title: Supplemental Table S2

description: Supplemental Table S2 for "Keeping up with the <i>Bacillus cereus </i>group: taxonomy through the genomics era and beyond"
DOI: 10.6084/m9.figshare.14396252
title: Supplemental Table S2

description: Supplemental Table S2 for "Keeping up with the <i>Bacillus cereus </i>group: taxonomy through the genomics era and beyond"
DOI: 10.25739/9qc0-n310
title: Carolyn_Lawrence_Dill_GOMAP_Cacao_NCBI_CriolloV2_March_2021.r1

description: This dataset generated by GOMAP is a high-coverage and reproducible functional annotation set based on Gene Ontology (GO) term assignments that covers all gene models in the NCBI Criollo_cocoa_genome_V2 genome that was made available in the July of 2016: https://www.ncbi.nlm.nih.gov/assembly/GCF_000208745.1/ with a median of 10 annotations per gene model with 99.65% coverage. This dataset was created in March of 2021.
DOI: 10.5517/ccdc.csd.cc21hncl
title: CCDC 1891879: Experimental Crystal Structure Determination

description: Related Article: Ivelise Dimbarre Lao Guimarães, Flávia Marszaukowski, René T. Boeré, Karen Wohnrath|2020|CSD Communication|||
DOI: 10.6084/m9.figshare.14396261
title: Supplemental Table S3

description: Supplemental Table S3 for "Keeping up with the <i>Bacillus cereus </i>group: taxonomy through the genomics era and beyond"
DOI: 10.6084/m9.figshare.14396261.v1
title: Supplemental Table S3

description: Supplemental Table S3 for "Keeping up with the <i>Bacillus cereus </i>group: taxonomy through the genomics era and beyond"
DOI: 10.5517/ccdc.csd.cc25ds3h
title: CCDC 2008276: Experimental Crystal Structure Determination

description: Related Article: M. Wanat, M. Malinska, M.J. Gutmann, R.I. Cooper, K. Wozniak|2021|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|77|41|doi:10.1107/S2052520620014936
DOI: 10.5517/ccdc.csd.cc25ds4j
title: CCDC 2008277: Experimental Crystal Structure Determination

description: Related Article: M. Wanat, M. Malinska, M.J. Gutmann, R.I. Cooper, K. Wozniak|2021|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|77|41|doi:10.1107/S2052520620014936
DOI: 10.6084/m9.figshare.14396264
title: Supplemental Table S4

description: Supplemental Table S4 for "Keeping up with the <i>Bacillus cereus </i>group: taxonomy through the genomics era and beyond"
DOI: 10.6073/pasta/eac7786211a62f38af64d7bc57c0a5b2
title: Landscape Position Project at North Temperate Lakes LTER: Chemical Limnology 1998 - 2000

description: Parameters characterizing the chemical limnology and spatial attributes of 51 lakes were surveyed as part of the Landscape Position Project. Parameters are measured at or close to the deepest part of the lake. The following parameters are measured one meter from the surface and two meters from the bottom of the lake: pH, total phosphorus, total nitrogen, total silica. The following parameters are measured one meter from the surface: dissolved organic carbon, total organic carbon, dissolved inorganic carbon, total inorganic carbon, spectrophotometric absorbance (color scan), major anions and cations, alkalinity. Sampling Frequency: once for conservative parameters (major ions, carbon, color, alkalinity); monthly for one summer for other parameters (chlorophyll, nitrogen, phosphorus, pH, silica, temperature, dissolved oxygen, and conductivity) Number of sites: 51
DOI: 10.6084/m9.figshare.14396273
title: Supplemental Table S5

description: Supplemental Table S5 for "Keeping up with the <i>Bacillus cereus </i>group: taxonomy through the genomics era and beyond"
DOI: 10.18112/openneuro.ds003605.v1.0.0
title: Finnish Letter-Sound Integration MEG Dataset
DOI: 10.6073/pasta/28796ff95bf5e072b13edef7d292db60
title: Landscape Position Project at North Temperate Lakes LTER: Chlorophyll 1998 - 2000

description: Parameters characterizing the chemical limnology and spatial attributes of 49 lakes were surveyed as part of the Landscape Position Project. Most parameters are measured at or close to the deepest part of the lake. Chlorophyll is measured by collecting separate integrated samples from the epilimnion, metalimnion, and hypolimnion Sampling Frequency: generally monthly for one summer; for some lakes, one or two samples in one summer Number of sites: 51
DOI: 10.6073/pasta/816af40468b77ba5f3f29ac0dbf2bf6c
title: Landscape Position Project at North Temperate Lakes LTER: Lake Characteristics 1998 - 2000

description: Parameters characterizing the chemical limnology and spatial attributes of 47 lakes were surveyed as part of the Landscape Position Project. Lake characteristics compiled here include lake area and perimeter, catchment area, mean and maximum depth, shoreline development factor, elevation and percent wetlands within catchment area. Lake order was determined using a modification of the method of Riera et al. (2000). Lake order is a numerical surrogate for groundwater influx and hydrological position along a drainage network, with the highest number indicating the lake lowest in a watershed. Lake order for each lake was determined by field visit with presence/absence of streams confirmed, not base solely on topographic maps. Riera, Joan L., John J. Magnuson, Tim K. Kratz, and Katherine E. Webster. 2000. A geomorphic template for the analysis of lake districts applied to Northern Highland Lake District, Wisconsin, U.S.A. Freshwater Biology 43:301-18. Number of sites: 49
DOI: 10.3886/e105583v5-83541
title: Apparent Per Capita Alcohol Consumption: National, State, and Regional Trends 1977-2018

description: <b>Version 5 release notes:</b>Changes release notes description, does not change data.<b>Version 4 release notes: <b><br></b></b>Adds 2018 data.<b></b><b></b>Please note that this file has some revisions on the pre-2018 data because the report changed those values, not due to any changes in my code. <b><b><br></b></b><b>Version 3 release notes: <b><br></b></b><b></b>Adds 2017 data<b><b>.<br></b></b><b>Version 2 release notes: <br></b>Makes columns showing the number of beers, glasses of wine, shots of liquor, and total drinks consumed based on the amount of ethanol consumed for each category that was already included.<b><br></b><br>This data set contains the per capita (persons aged 14+) consumption of ethanol (in gallons) for each state, Washington D.C., and totals for census regions and the United States as a whole, for the years 1977-2018. This includes total ethanol consumed as well as consumption by three categories: beer, wine, and shots of liquor ("spirits"). The PDF includes a method to convert the ethanol variables into total drinks of each type. I used this method to create columns for how many beers, glasses of wine, shots of liquor, and total drinks were consumed.<br><br>The PDF doesn't say how many ounces of fluid is in each drink type (except for the number_of_drinks_total variable) so I used the information provided by the National Institute on Alcohol Abuse and Alcoholism here - https://www.niaaa.nih.gov/alcohol-health/overview-alcohol-consumption/what-standard-drink. Please note that the number_of_drinks_total variable is based on the conversion formula provided, not by adding the individual drink categories together and therefore will be slightly different than that way of measuring it. <br><br><b>This data comes from a report by Dr. Megan E. Slater and </b><b>Dr. Hillel R. Alpert at the National Institute on Alcohol Abuse and Alcoholism (downloaded here </b><b>https://pubs.niaaa.nih.gov/publications/surveillance115/CONS18.htm</b><b>)</b><b>. That report is one of the files available to download and is included as it explains the methodology the two authors used for the data. I am not affiliated with the original report at all. If you do use this data please also cite the original report.</b><br><br>When using this data consider that it is rate per capita (persons aged 14+) based on the population in that state so states that experience lots of visitors (e.g. Nevada and Washington D.C.) may have incorrect numbers. <br><br>
description: Persons aged 14 and over living in the United States<br>. Smallest Geographic Unit: State, Region, Country
DOI: 10.3886/e136281v1
title: Revised reproduction package for "Maternal Depression, Women’s Empowerment, and Parental Investment: Evidence from a Randomized Controlled Trial", Baranov et al. (2020)]

description: Replication exercise of Baranov et BIroli (2021)<br>
DOI: 10.3886/e120743v1-83544
title: Data and Code for: "Preventing the Spread of Antibiotic Resistance"

description: This paper studies the spread of antibiotic resistance and its determinants, relying on unique data at state, year, bacteria and drug level, covering all US states. I relate antibiotic resistance to the use of antibiotics in human prescription and in animal production in a triple difference in difference design to control for confounders. Despite that animal production absorbs most of the antibiotic production, the results show that the main determinant of resistance is in fact human prescriptions, emphasising the role of policies targeting hospitals and ambulatory care. Resistance is particularly sensitive to antibiotic use for newer drugs.
DOI: 10.6084/m9.figshare.14396300
title: Survey request diary, 2019

description: Survey diary data entry form.
DOI: 10.6073/pasta/5dc74212610c7c24fc49f6cf957da9c5
title: Landscape Position Project at North Temperate Lakes LTER: Vertical Lake Profiles 1998 - 1999

description: Parameters characterizing the chemical limnology and spatial attributes of 45 lakes were surveyed as part of the Landscape Position Project. Parameters are measured at or close to the deepest part of the lake. A vertical profile of temperature, dissolved oxygen, and conductivity are collected at 1 meter increments Sampling Frequency: generally monthly for one summer; for some lakes, one or two samples in one summer Number of sites: 45