cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2brnb3
title: CCDC 2167685: Experimental Crystal Structure Determination

description: Related Article: Madeline N. Riffel, Lukas Siegel, Allen G. Oliver, Emily Y. Tsui|2022|Dalton Trans.|51|9611|doi:10.1039/D2DT01339H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2brnd5
title: CCDC 2167687: Experimental Crystal Structure Determination

description: Related Article: Madeline N. Riffel, Lukas Siegel, Allen G. Oliver, Emily Y. Tsui|2022|Dalton Trans.|51|9611|doi:10.1039/D2DT01339H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2brnf6
title: CCDC 2167688: Experimental Crystal Structure Determination

description: Related Article: Madeline N. Riffel, Lukas Siegel, Allen G. Oliver, Emily Y. Tsui|2022|Dalton Trans.|51|9611|doi:10.1039/D2DT01339H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2brznr
title: CCDC 2168005: Experimental Crystal Structure Determination

description: Related Article: Dilan Karunathilaka, R. M. G. Rajapakse, April E. Hardin, Thomas More Sexton, Nicholas E. Sparks, Jacquelyn J. Mosely, Arnold L. Rheingold, Nathan I. Hammer, Gregory S. Tschumper, Davita L. Watkins|2022|CrystEngComm|24|4564|doi:10.1039/D2CE00560C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2brzps
title: CCDC 2168006: Experimental Crystal Structure Determination

description: Related Article: Dilan Karunathilaka, R. M. G. Rajapakse, April E. Hardin, Thomas More Sexton, Nicholas E. Sparks, Jacquelyn J. Mosely, Arnold L. Rheingold, Nathan I. Hammer, Gregory S. Tschumper, Davita L. Watkins|2022|CrystEngComm|24|4564|doi:10.1039/D2CE00560C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2brzqt
title: CCDC 2168007: Experimental Crystal Structure Determination

description: Related Article: Dilan Karunathilaka, R. M. G. Rajapakse, April E. Hardin, Thomas More Sexton, Nicholas E. Sparks, Jacquelyn J. Mosely, Arnold L. Rheingold, Nathan I. Hammer, Gregory S. Tschumper, Davita L. Watkins|2022|CrystEngComm|24|4564|doi:10.1039/D2CE00560C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2brzrv
title: CCDC 2168008: Experimental Crystal Structure Determination

description: Related Article: Dilan Karunathilaka, R. M. G. Rajapakse, April E. Hardin, Thomas More Sexton, Nicholas E. Sparks, Jacquelyn J. Mosely, Arnold L. Rheingold, Nathan I. Hammer, Gregory S. Tschumper, Davita L. Watkins|2022|CrystEngComm|24|4564|doi:10.1039/D2CE00560C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bsng8
title: CCDC 2168650: Experimental Crystal Structure Determination

description: Related Article: Janusz Gregoliński, Katarzyna Ślepokura, Julia Kłak, Maciej Witwicki|2022|Dalton Trans.|51|9735|doi:10.1039/D2DT01329K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bsnh9
title: CCDC 2168651: Experimental Crystal Structure Determination

description: Related Article: Janusz Gregoliński, Katarzyna Ślepokura, Julia Kłak, Maciej Witwicki|2022|Dalton Trans.|51|9735|doi:10.1039/D2DT01329K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bsnjb
title: CCDC 2168652: Experimental Crystal Structure Determination

description: Related Article: Janusz Gregoliński, Katarzyna Ślepokura, Julia Kłak, Maciej Witwicki|2022|Dalton Trans.|51|9735|doi:10.1039/D2DT01329K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bsnkc
title: CCDC 2168653: Experimental Crystal Structure Determination

description: Related Article: Janusz Gregoliński, Katarzyna Ślepokura, Julia Kłak, Maciej Witwicki|2022|Dalton Trans.|51|9735|doi:10.1039/D2DT01329K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bsw45
title: CCDC 2168857: Experimental Crystal Structure Determination

description: Related Article: Yousuke Yamaoka, Daisuke Yamasaki, Daigo Kajiwara, Makiko Shinozaki, Ken-ichi Yamada, Kiyosei Takasu|2022|Org.Lett.|24|4389|doi:10.1021/acs.orglett.2c01607
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bsw56
title: CCDC 2168858: Experimental Crystal Structure Determination

description: Related Article: Yousuke Yamaoka, Daisuke Yamasaki, Daigo Kajiwara, Makiko Shinozaki, Ken-ichi Yamada, Kiyosei Takasu|2022|Org.Lett.|24|4389|doi:10.1021/acs.orglett.2c01607
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bt0ck
title: CCDC 2168988: Experimental Crystal Structure Determination

description: Related Article: Wei Zhou, Xuefeng Cong, Masayoshi Nishiura, Zhaomin Hou|2022|Chem.Commun.|58|7257|doi:10.1039/D2CC02489F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bt5y9
title: CCDC 2169161: Experimental Crystal Structure Determination

description: Related Article: Leichuan Xu, Haoyun Ma, Xinkun An, Yihao Li, Qian Zhang, Xinlei Liu, Mingan Wang|2022|RSC Advances|12|17629|doi:10.1039/D2RA02898K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bpcgw
title: CCDC 2165488: Experimental Crystal Structure Determination

description: Related Article: Yong-Qiang Wang, Kunhua Xu, Long Min, Chuang-Chuang Li|2022|J.Am.Chem.Soc.|144|10162|doi:10.1021/jacs.2c04633
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2btdwg
title: CCDC 2169376: Experimental Crystal Structure Determination

description: Related Article: Ting-Bi Hua, Yu-Hong Ma, Xiao-Yu He, Long Wang, Jia-Ying Yan, Qing-Qing Yang|2022|Org.Chem.Front.|9|3558|doi:10.1039/D2QO00451H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.6609576
title: PVirDB_ver20220603.fasta

description: PVirDB dataset MultiFASTA file for creating the nucleotide BLAST database. This file will be updated on a 6 monthly basis.
DOI: 10.5281/zenodo.6609575
title: PVirDB_ver20220603.fasta

description: PVirDB dataset MultiFASTA file for creating the nucleotide BLAST database. This file will be updated on a 6 monthly basis.
DOI: 10.5281/zenodo.6776524
title: Microbiota analysis in the hemodialysis population — Focusing on Enterobacteriaceae

description: <strong>Abstract</strong> <strong>Background: </strong><br> Infection is a recognized risk factor for mortality among hemodialysis patients, including infection caused by <em>Enterobacteriaceae</em>. We aimed to investigate <em>Enterobacteriaceae</em> in gut microbiota among hemodialysis patients and to analyze associations between microbiota and clinical parameters <strong>Materials and Methods</strong>:<br> This prospective study of microbiota analysis in hemodialysis patients was conducted in April-May 2018. A control group without recent antibiotic use or hospitalization was used for comparison. Stool samples underwent 16S rRNA sequencing, using Greengenes 16S rRNA database for microbiota analysis. <strong>Results:</strong><br> Among 96 hemodialysis (HD) patients, mean age was 61.9±0.8 years and mean duration of HDwas 6.5±0.7 years. No significant differences were found in alpha diversity between HD and control groups (HD group 949.5, controls 898; p=0.16) although significant between-group differences were found in beta diversity(P&lt;0.001). At phylum level, HD group hada higher abundance of <em>Firmicutes</em> (median 0.58 [0.1-0.96] vs. 0.53 [0.09-0.88]; p= 0.034) and <em>Proteobacteria</em> (median 0.06 [0-0.68] vs. 0.02 [0-0.68]; p=0.005), but lower abundance of <em>Bacteriodetes</em> (median 0.12 [0.002-0.63] vs. 0.29 [0.002-0.82];p=0.001). At genus level, the five most frequentoperational taxonomic unit (OTU) IDs were <em>Escherichia-Shigella</em> complex (3), <em>Escherichia</em> and <em>Klebsiella</em>. <strong>Conclusions:</strong> Alpha diversity in HD patients is not lower than that in healthy controls but significant between-group differences are found in microbiota composition according to beta diversity, due to decreased <em>Bacteriodetes</em>and increased <em>Firmicutes</em> and<em> Proteobacteria. </em>HD patients have a higher abundance of <em>Proteobacteria </em>in spite of reserved diversity, but without correlation with clinical factors.
DOI: 10.5281/zenodo.6776523
title: Microbiota analysis in the hemodialysis population — Focusing on Enterobacteriaceae

description: <strong>Abstract</strong> <strong>Background: </strong><br> Infection is a recognized risk factor for mortality among hemodialysis patients, including infection caused by <em>Enterobacteriaceae</em>. We aimed to investigate <em>Enterobacteriaceae</em> in gut microbiota among hemodialysis patients and to analyze associations between microbiota and clinical parameters <strong>Materials and Methods</strong>:<br> This prospective study of microbiota analysis in hemodialysis patients was conducted in April-May 2018. A control group without recent antibiotic use or hospitalization was used for comparison. Stool samples underwent 16S rRNA sequencing, using Greengenes 16S rRNA database for microbiota analysis. <strong>Results:</strong><br> Among 96 hemodialysis (HD) patients, mean age was 61.9±0.8 years and mean duration of HDwas 6.5±0.7 years. No significant differences were found in alpha diversity between HD and control groups (HD group 949.5, controls 898; p=0.16) although significant between-group differences were found in beta diversity(P&lt;0.001). At phylum level, HD group hada higher abundance of <em>Firmicutes</em> (median 0.58 [0.1-0.96] vs. 0.53 [0.09-0.88]; p= 0.034) and <em>Proteobacteria</em> (median 0.06 [0-0.68] vs. 0.02 [0-0.68]; p=0.005), but lower abundance of <em>Bacteriodetes</em> (median 0.12 [0.002-0.63] vs. 0.29 [0.002-0.82];p=0.001). At genus level, the five most frequentoperational taxonomic unit (OTU) IDs were <em>Escherichia-Shigella</em> complex (3), <em>Escherichia</em> and <em>Klebsiella</em>. <strong>Conclusions:</strong> Alpha diversity in HD patients is not lower than that in healthy controls but significant between-group differences are found in microbiota composition according to beta diversity, due to decreased <em>Bacteriodetes</em>and increased <em>Firmicutes</em> and<em> Proteobacteria. </em>HD patients have a higher abundance of <em>Proteobacteria </em>in spite of reserved diversity, but without correlation with clinical factors.
DOI: 10.34808/4ag2-tw36
title: Nasal polyp, unspecified - Male, 73 - Tissue image [629073001149291]

description: This is the histopathological image of NASAL CAVITY AND MIDDLE EAR tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: VS200 Olympus slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 73Clinical description: Nasal polyps, alergic.Gender: MaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter X - Diseases of the respiratory systemDiagnosis: Nasal polyp, unspecifiedResult of the histopathological examination: Polypoid fragments of edematous mucosa, covered with normotypical cillated epithelium, in chronic inflammation. There are multiple eosinophils.Sample:Material: FFPECollecting method: Surgical specimenTopography: RESPIRATORY SYSTEM AND INTRATORACIC ORGANSOrgan: NASAL CAVITY AND MIDDLE EARTissue: Nasal cavityType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: VS200 OlympusLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/r6sz-pr98
title: Capillary hemangioma - Female, 58 - Tissue image [6290730011499891]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: VS200 Olympus slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 58Clinical description: capillary hemangioma of the skin in retroauricular area.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: BLOOD VESSEL TUMORSDiagnosis: Capillary hemangiomaResult of the histopathological examination: capillary hemangioma of the skin, total excision.Sample:Material: FFPECollecting method: Surgical specimenTopography: SKINOrgan: SKINTissue: Skin of head, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: VS200 OlympusLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/sbxa-sr46
title: Acidophil adenocarcinoma - Female, 54 - Tissue image [629073001149971]

description: This is the histopathological image of OTHER AND UNSPECIFIED MAJOR SALIVARY GLANDS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: VS200 Olympus slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 54Clinical description: Nodule in submandibular gland.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Acidophil adenocarcinomaResult of the histopathological examination: Oncocytoma.Sample:Material: FFPECollecting method: Surgical specimenTopography: LIP, ORAL CAVITY AND PHARYNXOrgan: OTHER AND UNSPECIFIED MAJOR SALIVARY GLANDSTissue: Submandibular glandType of staining: positive/IHCStaining: Not applicableAntibody: CK 7Technology:Equipment: VS200 OlympusLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/kj4x-ve47
title: Tubulovillous adenoma, NOS - Female, 75 - Tissue image [6290730011494411]

description: This is the histopathological image of COLON tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 75Clinical description: Polyp of descending colon.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Tubulovillous adenoma, NOSResult of the histopathological examination: Tubulovillous adenoma, low-grade.Sample:Material: FFPECollecting method: Excision of lesionsTopography: DIGESTIVE ORGANSOrgan: COLONTissue: Descending colonType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/np6h-es53
title: Callus - Female, 35 - Tissue image [6290730011488801]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 35Clinical description: Callus.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XII - Diseases of the skin and subcutaneous tissueDiagnosis: CallusResult of the histopathological examination: Callus.Sample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin of footType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/erqe-ks26
title: Pyogenic granuloma - Female, 26 - Tissue image [6290730011496151]

description: This is the histopathological image of NASAL CAVITY AND MIDDLE EAR tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: VS200 Olympus slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 26Clinical description: Bleeding polip of the nasal septum.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter XII - Diseases of the skin and subcutaneous tissueDiagnosis: Pyogenic granulomaResult of the histopathological examination: Pyogenic granuloma.Sample:Material: FFPECollecting method: Surgical specimenTopography: RESPIRATORY SYSTEM AND INTRATORACIC ORGANSOrgan: NASAL CAVITY AND MIDDLE EARTissue: Nasal septum, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: VS200 OlympusLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/71cx-v367
title: Blue nevus, NOS - Female, 42 - Tissue image [6290730011492981]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 42Clinical description: Grey lesion of skin of pelvis, diameter 4 mm.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: NEVI AND MELANOMASDiagnosis: Blue nevus, NOSResult of the histopathological examination: Blue melanocytic neavus.Sample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin of lower limb and hipType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/4vht-7t54
title: Other mycoses, not elsewhere classified - Female, 40 - Tissue image [6290730011499501]

description: This is the histopathological image of ACCESSORY SINUSES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 40Clinical description: Fungal sinusitis.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter I - Certain infectious and parasitic diseasesDiagnosis: Other mycoses, not elsewhere classifiedResult of the histopathological examination: Fungal sinusitis  (PAS+, Grocott+).Sample:Material: FFPECollecting method: Excision of lesionsTopography: RESPIRATORY SYSTEM AND INTRATORACIC ORGANSOrgan: ACCESSORY SINUSESTissue: Paranasal sinusType of staining: positive/HCStaining: GrocottAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk