cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11673615.v1
title: Supplementary Material for: Effects of Skip-Logic on the Validity of Dimensional Clinical Scores: A Simulation Study

description: Structured assessment of clinical phenotypes is a burdensome procedure, largely due to the time required. One method to alleviate this is “skip-logic,” which allows for portions of an interview to be skipped if initial (“screen”) items are not endorsed. The bias that skip-logic introduces to resultant continuous scores is unknown and can be explored using Item Response Theory. Interview response data were simulated while varying 5 characteristics of the measures: number of screen items, difficulty (clinical severity) of the screens, difficulty of non-screen items, shape of the trait distribution, and range of discrimination parameters. The number of simulations and examinees were held constant at 2,000 and 10,000, respectively. A criterion variable correlating 0.80 with the measured trait was also simulated, and the outcome of interest was the difference between the correlations of the criterion variable and the two estimated scores (with and without skip-logic). Effects of the simulation conditions on this outcome were explored using ANOVA. All main effects and interactions were significant. The largest 2-way interaction was between number of screen items and average item discrimination, such that the number of screen items had a large effect on bias only when discrimination parameters were low. This, among other interactions explored here, suggests that skip-logic can bias results using continuous scores; however, the effects of this bias are usually inconsequential. Skip-logic in clinical assessments can introduce bias in continuous sum scores, but this bias can usually be ignored.
DOI: 10.17632/v74xmgcwgg
title: Effects of suspended sediment on survival, growth, and nutritional condition of green-lipped mussel spat (Perna canaliculus, Gmelin, 1791)

description: Highlights
• Juvenile mussels highly resistant to suspended sediment up to 1250 mg L-1
• No effect of suspended sediment on mortality of juvenile mussels
• Nutritional condition of juvenile mussels not affected by suspended sediment
• Increased shell growth of juvenile mussels in high suspended sediment
These data comprise mussel spat length, mortality, and experimental conditions, as well as R code to process data.
DOI: 10.17632/vrg7x9kvt5
title: Mangroves and Wetlands of Bacalar, Quintana Roo, Mexico, dataset

description: Data obtained from "Participatory sampling for the inventory and diagnosis of Mangrove ecosystems of Bacalar Lagoon"; carried out between April and May 2021. Field work in 79 sites along the shoreline of Bacalar Lagoon, Quintana Roo, to characterize the riverine vegetation. Vegetation data (species richness, height, canopy size, apparent density, and condition), soil samples were taken with an AMS Gouge Augers nucleator, and salinity and interstitial water temperature were recorded. Through remote sensing supported by field data, the map "Mangroves and Wetlands of Bacalar, Quintana Roo, Mexico" was constructed and were identified: 1) Water body; 2) Floodplains; 3) Mangrove with hydrophilic grassland; 4) Fringe mangrove; 5) Peten Mangrove / Medium statured tropical forest; 6) Medium statured tropical forest; 7) Gallery vegetation with Mangrove; and 8) Modified.
DOI: 10.17632/t4ssmf6b8h
title: Task Difficulty Modulates the Effect of Eye Contact on Word Memory in Females

description: This data is for the article “Task Difficulty Modulates the Effect of Eye Contact on Word Memory in Females”. This dataset contains the raw data and processed data of reaction time and accuracy from the experiment.
DOI: 10.17632/v43xdpcg99
title: Is there a low-frequency bias in multiproxy reconstructions of tropical pacific SST variability?

description: This file includes the time series of the multiproxy ENSO reconstructions generated in Loope et al. 2020 (Is there a low-frequency bias in multiproxy reconstructions of tropical pacific SST variability?)
DOI: 10.17632/4rfvh24rcg
title: Certificate of Participation

description: Has Attended Empowering Leaders Forum Vol. 29
"2023 Outlook: The Rise Of Hybrid Leadership"
DOI: 10.17632/z8b6r2c43g
title: Promise and Reality: Using ICTs to Bridge China’s Rural–Urban Divide in Education

description: Field-notes and interview transcripts used for this qualitative study
DOI: 10.6084/m9.figshare.28443626.v2
title: Data and code for 'Multiscale effects of habitat cover and fragmentation on howler monkey (<i>Alouatta pigra</i>) presence in Belize'

description: Data and script to run the models outlined in Lydia K.D. Katsis,  Kayla Hartwell, Rebecca J. Foster, Said Gutierrez, Bart J. Harmsen, Dominique Lizama<sup> </sup><b>, </b>Emma E. Sanchez, C. Patrick Doncaster, Justin Kitzes<i>. </i>Multiscale effects of habitat cover and fragmentation on howler monkey (<i>Alouatta pigra</i>) presence in Belize.<br>
DOI: 10.17632/98wxh5t7vz
title: Neuropsychological deficits correlate with symptoms severity and cortical thickness in Borderline Personality Disorder

description: Neuropsychological abnormalities have been proposed to contribute to the development and
maintenance of Borderline Personality Disorder (BPD). In this study we compared the performance of 24 BPD patients to 24 healthy controls obtained at the
neuropsychological battery “Brief Assessment and Cognition in Schizophrenia”, exploring the relationship between
the cognitive impairments and current symptomatology, brain grey matter volumes and cortical thickness,
controlling for medications load.
Biological data are not uploaded due to ethical restrictions.

https://doi.org/10.1016/j.jad.2020.09.060
DOI: 10.6084/m9.figshare.27386568.v1
title: Wesbank Auction catalogue

description: Document of a Wesbank auction's vehicle listings.
DOI: 10.17632/xmctnsgs7v
title: Underlying data: Spatial distribution in surface aerosol light absorption across India

description: The dataset contains the measured PM2.5 concentrations (µg/m^3), spectral absorption coefficients (Mm^-1), mass absorption cross-section (m^2/g), absorption Angstrom exponents, and the estimated fraction of absorption by brown carbon particles.
DOI: 10.6084/m9.figshare.27932940.v1
title: Supplementary Material for: Diagnostic value of artificial intelligence-based pathology diagnosis system in lymphatic metastasis of gastric cancer

description: Abstract
Introduction Gastric cancer remains one of the leading causes of cancer-related mortality worldwide, with lymph node metastasis (LNM) being an independent prognostic factor. However, there are still challenges in the pathological diagnosis of LNM in gastric cancer (GC). The aim of this meta-analysis is to systematically evaluate the accuracy of artificial intelligence (AI) in detecting LNM in GC from whole-slide pathological images.. 
Methods As of March 24, 2024, a comprehensive search for studies on the pathological diagnosis of GC LNM AI was performed in the databases of PubMed, Web of Science, Cochrane Library, and CNKI. Meta-analysis of the included data was performed using Meta-Disc 1.4, Review Manager 5.4, and Stata SE 17.0 software to calculate diagnostic metrics such as overall sensitivity and specificity. The overall diagnostic performance of the AI was assessed. Meta-regression analysis explored sources of heterogeneity.
Results A total of 7 articles involving 1,669 GC patients were included. The analysis showed that AI had a sensitivity of 0.90 (95% CI: 0.84-0.94) and a specificity of 0.95 (95% CI: 0.91-0.98) for the diagnosis of GC LNM, with significant heterogeneity across studies. The area under the curve was 0.97, indicating an excellent diagnostic value. Meta-regression analysis showed that the sample size and the number of study centers contributed to the heterogeneity.
Conclusion AI for diagnosing LNM in GC from whole-slide pathological images demonstrates high accuracy, offering significant clinical implications for improving diagnosis and treatment strategies.
DOI: 10.17632/y7p9tbh2nt
title: High-resolution tandem mass spectrometry dataset in leaves of foxglove plants

description: The first pair of true leaves from 5-week-old Digitalis seedlings grown under a 16-hour light period at 25 °C was collected in biological triplicates. 80% Methanol extract of freeze-dried leaf samples from Digitalis lanata and Digitalis purpurea were filtered through a 0.45 µl filter before injection to the LC/MS/MS system. The extract was first separated on a C18 reverse-phase column before enteringth Q-ExactiveTM analyser. A selected ion monitoring with MS2 (SIM-ddMS2) was used for data acquisition.
DOI: 10.6084/m9.figshare.23909529.v1
title: Supplementary Material for: Significance of ultra-radical surgery in extensive metastatic ovarian growing teratoma syndrome

description: Introduction: To evaluate the perioperative risks and outcomes of ultra-radical surgery in patients with extensive metastatic ovarian growing teratoma syndrome (GTS). Methods: We conducted a retrospective study of patients with extensive metastatic ovarian GTS treated in our hospital between 2000 and 2022. Patients’ clinical characteristics, surgical treatment, and outcomes were evaluated. Results: Overall, 13 patients were identified and the median age at diagnosis of ovarian immature teratoma (IT) was 24 years (range: 5 – 37). The median interval between IT diagnosis and presenting GTS was 8 months (range: 2 – 60), with a median surgery delay of 5 months (range: 3 – 300). Peritoneum and liver were the most commonly affected site (100%), followed by bowel (12 patients, 92.3%), diaphragm (12 patients, 92.3%), adnexa (9 patients, 69.2%), omentum (8 patients, 61.5%), uterus (7 patients, 53.8%), in the descending order. The mean operation time was 316 min (range: 180 – 625), and the mean blood loss volume was 992 ml (range: 200 – 5000). Peritoneal metastasectomy (13 patients, 100%), diaphragmatic metastasectomy (12 patients, 92.3%), metastases removal from the bowel (8 patients, 61.5%), partial hepatectomy (4 patients, 30.8%), bowel excision and anastomosis (1 patient, 7.7%) were also applied to achieve optimal debulking. R0 was achieved in 9 (69.2%) patients. A high rate of intraoperative blood transfusion (8 patients, 61.5%) and admission to the intensive care unit (9 patients, 69.2%) were observed, and the median postoperative hospitalization time was 8 days (range: 4 – 22). After a median follow-up of 3.3 years, 9 patients were free of disease and 4 were alive with stable residual diseases. Conclusion: The survival outcomes in extensive metastatic ovarian GTS were satisfactory after ultra-radical surgery, while a proper therapeutic plan should be established due to the high perioperative risks.
DOI: 10.17632/rmkb9g4tj3
title: Treatment of the central sensitization component of pelvic pain using systemic manual therapy

description: This study tests the temporal model for central sensitization in the treatment of pain in the pelvic region using systemic manual therapy
DOI: 10.17632/5txh36fpk3
title: A simplified scored system for the diagnosis of diarrhoea and respiratory diseases in dairy calves

description: The present research paper aims to validate a simplified calf health scoring chart (SIM-score) for calf diarrhoea and calf respiratory disease (RD) diagnosis and determine the associations between passive immune transfer and growth morbidity, and mortality in dairy calves. A blood sample was taken from Holstein's calves at 1-7 days of age to determine serum total protein concentration by refractometry (< 5.2 g/dL was indicative of the failure of passive transfer [FPT]). Subsequently, calves were weekly weighted for 9 weeks with a heart-girth measuring tape and clinically evaluated for diarrhoea and RD diagnosis using a calf health scoring chart of the University of Wisconsin (WIN-score, as a reference method) and a SIM-score. The SIM score was based on observational clinical signs for diagnosing RD and a cleanliness score for diagnosing diarrhoea. The agreement between WIN-score and SIM-score was estimated by calculating Kappa's coefficient. Logistic regression models, risk factors for FPT, diarrhoea events, RD events, and death events were assessed. The associations between already mentioned predictors and the growth of calves were assessed by fitting linear regression with repeated measures. Calves with FPT weighted 2.49 Kg less (P= 0.020) had 4.03 (P= 0.037) times greater odds for RD and had 2.74 times greater odds of death (P= 0.092) than their mates. The passive immune transfer was not associated with diarrhoea (P= 0.839). Finally, both charts of scoring had a good and poor agreement for the diagnosis of RD and diarrhoea, respectively. 
In conclusion, a successful passive transfer of immunity improves the development of the calves, has a protective effect against RD, and decreases the odds of death. On the other hand, we concluded that the SIM score is a valuable test for diagnosing RD but not for diagnosing diarrhoea.
DOI: 10.17632/66dy7vnhpj
title: Matlab codes for "Systematically formulating investments for carbon offset by multiple-objective portfolio selection: Classifying, evolving, and optimizing"

description: Matlab codes
DOI: 10.17632/pb5zdy4c49
title: Low density steel

description: Deciphering the Composition-Process-Microstructure Correlation in Low-Density FeMnAlC Steels with Machine Learning
DOI: 10.21233/q33a-j585
title: Gull Pond diatom dataset

description: Raw data for the Gull Pond diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17632/zrhfw4r6hb
title: Pseudo-Direct Numerical Simulation (P-DNS) databases

description: The databases contain the inertial stress tensors computed from the equilibrium state of high fidelity simulations of different RVEs. These representative volume elements isolate fine scale fluid flow regions to compute their dynamic behavior subject to boundary conditions provided from the coarse scale. Homogeneous flows require Id1 (and Id2) inputs. Multiphase flows also require c (dispersed phase volume fraction), d (mean diameter), n (spread) of the Rosin Rammler distribution.
DOI: 10.17632/5msxnzhv27
title: Quantitative Analysis of Tessitura and Density in Franz Schubert’s Die schöne Müllerin

description: Quantitative analysis of vocal compositions continues to be a topic of exploration in seeking methods that objectively match a singer’s ability with musical difficulty. Work is needed to study the vocal demands of song cycles of Western classical art songs. The objective of this study is to assess the compositional range, musical tessitura, melodic directionality, vocal fold cycle dose, phonation time dose, and accompaniment density of the 20 art songs comprising Die schöne Müllerin by Franz Schubert.
DOI: 10.17632/nn53dskr7z
title: Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures

description: We have developed several autotuning benchmarks in CUDA that take into account performance-relevant source-code parameters and reach near peak-performance on various GPU architectures. We have used them during the development and evaluation of a novel search method for tuning space. With our framework Kernel Tuning Toolkit, freely available at Github, we measured computation times and hardware performance counters on several GPUs for the complete tuning spaces of five benchmarks. These data, which we provide here, might benefit research of search algorithms for the tuning spaces of GPU codes or research of relation between applied code optimization, hardware performance counters, and GPU kernels' performance. Moreover, we provide the scripts we used for robust evaluation of our searcher and comparison to others in detail. In particular, the script that simulates the tuning, i.e., replaces time-demanding compiling and executing the tuned kernels with a quick reading of the computation time from our measured data, makes it possible to inspect the convergence of tuning search over a large number of experiments. These scripts, freely available with our other codes, make it easier to experiment with search algorithms and compare them in a robust way. During our research, we generated models for predicting values of performance counters from values of tuning parameters of our benchmarks. Here, we provide the models themselves and describe the scripts we implemented for their training. These data might benefit researchers who want to reproduce or build on our research. For details on these data, see related article: J. Filipovič, J. Hozzová, A. Nezarat, J. Ol’ha, F. Petrovič, Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures, https://arxiv.org/abs/2102.05299 (2021). For details on the proposed search method using performance counters, see related article: J. Filipovič, J. Hozzová, A. Nezarat, J. Ol’ha, F. Petrovič, Using hardware performance counters to speed up autotuning convergence on GPUs, https://arxiv.org/abs/2102.05297 (2021).
DOI: 10.17632/x7yvshrnxy
title: Tweets

description: Bitcoin tweets
DOI: 10.17632/jbmhv89c3r
title: IDMA_code_and_data

description: Our MATLAB code run the inflation forecasts on different countries and entities under different time horizons, using the IDMA method as well as other ones.
DOI: 10.17632/kfk5j9g4xc
title: EQ-5D-5L data for Moroccan COVID-19 survivors

description: This dataset contains demographic, clinical, and health-related quality of life (HRQoL) data from 213 COVID-19 survivors including : 55 Intensive care unit (ICU) patients and 158 non-ICU patients. Health related quality of life was assessed using the EQ-5D-5L instrument.
DOI: 10.17632/cnr42zn39c
title: Ecoc Review Literature

description: Scopus dataset of the review of the literature on the European Capital of Culture (ECOC); time period 2004-2023; Journal articles in final stage; publications in English (language); keywords: european AND capital AND culture; exclude publications in the following areas ENER, AGRI, MEDI, MATH, CENG, BIOC, COMP.
DOI: 10.17632/f4sbfcjt5b
title: Human early embryo

description: Analysis scripts for the human early embryo single cell sequencing datasets
DOI: 10.17632/gpdjg8wpzb
title: Dataset on The Impact of Implementing a Shared Governance Model on The Level of Professional Governance among Nurses in Saudi Arabia: Insights from Experimental Data

description: Dataset on The Impact of Implementing a Shared Governance Model on The Level of Professional Governance among Nurses in Saudi Arabia
DOI: 10.17632/pbbn55mhy9
title: Data for "Identification of a retinoic acid-dependent hemogenic endothelial progenitor from human pluripotent stem cells"

description: The generation of hematopoietic stem cells (HSCs) from human pluripotent stem cells (hPSCs) is a major goal for regenerative medicine. During embryonic development, HSCs derive from hemogenic endothelium (HE) in a NOTCH and retinoic acid (RA)-dependent manner. While a WNT-dependent (WNTd) patterning of nascent hPSC mesoderm specifies clonally multipotent intra-embryonic-like HOXA+ definitive HE, this HE is functionally unresponsive to RA. Here we show that WNTd mesoderm, prior to HE specification, is actually comprised of two distinct KDR+CD34neg populations. CXCR4negCYP26A1+ mesoderm gives rise to HOXA+ multilineage definitive HE in an RA-independent manner, while CXCR4+ALDH1A2+ mesoderm gives rise to HOXA+ multilineage definitive HE in a stage-specific, RA-dependent manner. Further, both RA-independent (RAi) and -dependent (RAd) HE harbor transcriptional similarity to distinct populations found in the early human embryo, including HSC-competent HE. This revised model of human hematopoietic development provides essential resolution to the regulation and origins of the multiple waves of hematopoiesis. These insights provide the basis for the generation of specific hematopoietic populations, including the de novo specification of HSCs.
DOI: 10.6084/m9.figshare.5089867.v1
title: Rumor-mongers as reliable sources: Communicating threat-related information suggests source reliability even for unlikely threats

description: Data for Studies 1-5 and Pretests 1-2 from our paper: "Rumor-mongers as reliable sources: Communicating threat-related information suggests source reliability even for unlikely threats".
DOI: 10.6084/m9.figshare.6886520.v1
title: The diversity of <i>Trichoderma</i> species from soil in South Africa, with five new additions

description: Fourteen <i>Trichoderma</i> (Hypocreales) species were identified during a survey of the genus in South Africa. These include <i>T. afroharzianum, T. asperelloides, T. asperellum, T. atrobrunneum, T. atroviride, T. camerunense, T. gamsii, T. hamatum, T. koningii, T. koningiopsis, T. saturnisporum, T. spirale, T. virens</i>, and <i>T. viride</i>. Ten of these species were not known to occur in South Africa prior to this investigation. Five additional species were novel and are described here as <i>T. beinartii, T. caeruleimontis, T. chetii, T. restrictum</i>, and <i>T. undulatum</i>. These novel <i>Trichoderma</i> species display morphological traits that are typical of the genus. Based on molecular identification using calmodulin, endochitinase, nuc rDNA internal transcribed spacers (ITS1-5.8S-ITS2), RNA polymerase II subunit B, and translation elongation factor 1-α gene sequence data, <i>T. beinartii, T. caeruleimontis</i>, and <i>T. chetii</i> were found to belong to the <i>Longibrachiatum</i> clade, whereas <i>T. restrictum</i> is a member of the <i>Hamatum</i> clade. <i>Trichoderma undulatum</i> occupies a distinct lineage distantly related to other <i>Trichoderma</i> species. Strains of <i>T. beinartii</i> and <i>T. chetii</i> were isolated previously in Hawaii and Israel; however, <i>T. caeruleimontis, T. restrictum</i>, and <i>T. undulatum</i> are so far known only from South Africa.
DOI: 10.15468/dl.rtabdx
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Amblyjoppa proteus (Christ, 1791)"
 ]
}

 The dataset includes 96 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009149-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/jjyp9m4wrp
title: Student Covid Stress 

description: The dataset contains the stress level of students and the Big 5 Dimensions and Facets data collected from students. The study used the COVID Student Stress Questionnaire (CSSQ) developed by Zurlo, Volta & Vallone (2020) because it was built with COVID-specific latent constructs. To measure personality, the study used the IPIP framework with 3 facets per dimension proposed by Han and Carole Pistole, (2017) and two questions per facet (both positively and negatively worded). The dimension score is the sum of the facet scores of the respective dimension. Both instruments used a 5-point Likert scale from fully agree to fully disagree. The data was collected using an online survey, and 420 usable responses were received.
DOI: 10.17632/gxz295ssn2
title: Muestras de geopolímeros obtenidos a partir de lodos residuales y polvo de ladrillo 

description: Photograph of the samples from mixtures of residual sludge added with brick dust and/or metakaolin, alkalinely activated with sodium hydroxide and sodium metasilicate.