cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.97b50
title: Data from: Into the light: diurnality has evolved multiple times in geckos

description: Geckos are the only major lizard group consisting mostly of nocturnal
 species. Nocturnality is presumed to have evolved early in gecko evolution
 and geckos possess numerous adaptations to functioning in low light and at
 low temperatures. However, not all gecko species are nocturnal and most
 diurnal geckos have their own distinct adaptations to living in warmer,
 sunlit environments. We reconstructed the evolution of gecko activity
 patterns using a newly generated time-calibrated phylogeny. Our results
 provide the first phylogenetic analysis of temporal activity patterns in
 geckos and confirm an ancient origin of nocturnality at the root of the
 gecko tree. We identify multiple transitions to diurnality at a variety of
 evolutionary time scales and transitions back to nocturnality occur in
 several predominantly diurnal clades. The scenario presented here will be
 useful in reinterpreting existing hypotheses of how geckos have adapted to
 varying thermal and light environments. These results can also inform
 future research of gecko ecology, physiology, morphology and vision as it
 relates to changes in temporal activity patterns.
description: BEAST_5k_prune_Trees5,000 post burn-in trees from the BEAST analysis. Outgroups have been removed.BiSSE_unresolved_dataTrait data for BiSSE analyses using terminally-unresolved generic-level tree.BiSSE_Pruned_BEAST_phylogenyTerminally-unresolved generic-level tree for BiSSE analyses. Outgroups have been removed.BayesTraits_3char.dataTrait data - 3 character states -for Bayestraits analyses.BayesTraits_binary.dataTrait data - 2 character states -for Bayestraits analyses.Diurnality_6gene_dataAligned DNA sequence data in nexus format.Diurnality_6gene.part1.YuleInput file for BEAST analyses
DOI: 10.5061/dryad.8371
title: Data from: Epidermal growth factor receptor and transforming growth factor-beta signaling contributes to variation for wing shape in Drosophila melanogaster

description: Wing development in Drosophila is a common model system for the dissection
 of genetic networks and their roles during development. In particular, the
 RTK and TGF-beta regulatory networks appear to be involved with numerous
 aspects of wing development, including patterning, cell determination,
 growth, proliferation, and survival in the developing imaginal wing disc.
 However, little is known as to how subtle changes in the function of these
 genes may contribute to quantitative variation for wing shape, per se. In
 this study 50 insertional mutations, representing 43 loci in the RTK,
 Hedgehog, TGF-beta pathways, and their genetically interacting factors
 were used to study the role of these networks on wing shape. To
 concurrently examine how genetic background modulates the effects of the
 mutation, each insertion was introgressed into two wild-type genetic
 backgrounds. Using geometric morphometric methods, it is shown that the
 majority of these mutations have profound effects on shape but not size of
 the wing when measured as heterozygotes. To examine the relationships
 between how each mutation affects wing shape hierarchical clustering was
 used. Unlike previous observations of environmental canalization, these
 mutations did not generally increase within-line variation relative to
 their wild-type counterparts. These results provide an entry point into
 the genetics of wing shape and are discussed within the framework of the
 dissection of complex phenotypes.
description: Dworkin_Gibson_2006_PCDworkin_Gibson_2006_LM
DOI: 10.5061/dryad.2k422
title: Data from: The journey from traffic offender to severe road trauma victim: destiny or preventive opportunity?

description: Background: Road trauma is a leading cause of death and injury in young
 people. Traffic offences are common, but their importance as a risk
 indicator for subsequent road trauma is unknown. This cohort study
 assessed whether severe road trauma could be predicted by a history of
 prior traffic offences. Methodology and Principal Findings: Clinical data
 of all adult road trauma patients admitted to the Western Australia (WA)
 State Trauma Centre between 1998 and 2013 were linked to traffic offences
 records at the WA Department of Transport. The primary outcomes were
 alcohol exposure prior to road trauma, severe trauma (defined by Injury
 Severity Score &gt;15), and intensive care admission (ICU) or death,
 analyzed by logistic regression. Traffic offences directly leading to the
 road trauma admissions were excluded. Of the 10,330 patients included
 (median age 34 years-old, 78% male), 1955 (18.9%) had alcohol-exposure
 before road trauma, 2415 (23.4%) had severe trauma, 1360 (13.2%) required
 ICU admission, and 267 (2.6%) died. Prior traffic offences were recorded
 in 6269 (60.7%) patients. The number of prior traffic offences was
 significantly associated with alcohol-related road trauma (odds ratio [OR]
 per offence 1.03, 95% confidence interval [CI] 1.02–1.05), severe trauma
 (OR 1.13, 95%CI 1.14–1.15), and ICU admission or death (OR 1.10, 95%CI
 1.08–1.11). Drink-drinking, seat-belt, and use of handheld electronic
 device offences were specific offences strongly associated with road
 trauma leading to ICU admission or death—all in a ‘dose-related’ fashion.
 For those who recovered from road trauma after an ICU admission, there was
 a significant reduction in subsequent traffic offences (mean difference
 1.8, 95%CI 1.5 to 2.0) and demerit points (mean difference 7.0, 95%CI 6.5
 to 7.6) compared to before the trauma event. Significance: Previous
 traffic offences were a significant risk factor for alcohol-related road
 trauma and severe road trauma leading to ICU admission or death.
description: Traffic_offences_ICU_admission_study_dataset [2]savData used for the analysis, anonymized for publication.
DOI: 10.5061/dryad.dn151
title: Data from: Seed dispersal by ungulates as an ecological filter: a trait-based meta-analysis

description: Plant communities are often dispersal-limited and zoochory can be an
 efficient mechanism for plants to colonize new patches of potentially
 suitable habitat. We predicted that seed dispersal by ungulates acts as an
 ecological filter – which differentially affects individuals according to
 their characteristics and shapes species assemblages – and that the filter
 varies according to the dispersal mechanism (endozoochory, fur-epizoochory
 and hoof-epizoochory). We conducted two-step individual participant data
 meta-analyses of 52 studies on plant dispersal by ungulates in fragmented
 landscapes, comparing eight plant traits and two habitat indicators
 between dispersed and non-dispersed plants. We found that ungulates
 dispersed at least 44% of the available plant species. Moreover, some
 plant traits and habitat indicators increased the likelihood for plant of
 being dispersed. Persistent or nitrophilous plant species from open
 habitats or bearing dry or elongated diaspores were more likely to be
 dispersed by ungulates, whatever the dispersal mechanism. In addition,
 endozoochory was more likely for diaspores bearing elongated appendages
 whereas epizoochory was more likely for diaspores released relatively high
 in vegetation. Hoof-epizoochory was more likely for light diaspores
 without hooked appendages. Fur-epizoochory was more likely for diaspores
 with appendages, particularly elongated or hooked ones. We thus observed a
 gradient of filtering effect among the three dispersal mechanisms.
 Endozoochory had an effect of rather weak intensity (impacting six plant
 characteristics with variations between ungulate-dispersed and
 non-dispersed plant species mostly below 25%), whereas hoof-epizoochory
 had a stronger effect (eight characteristics included five ones with above
 75% variation), and fur-epizoochory an even stronger one (nine
 characteristics included six ones with above 75% variation). Our results
 demonstrate that seed dispersal by ungulates is an ecological filter whose
 intensity varies according to the dispersal mechanism considered.
 Ungulates can thus play a key role in plant community dynamics and have
 implications for plant spatial distribution patterns at multiple scales.
description: Data from: Seed
 dispersal by ungulates as an ecological filter: a trait-based
 meta-analysisThis files gathers data
 from 52 European studies analyzing seed dispersal by ungulates
 (endozoochory, epizoochory via fur, epizoochory via hooves): abundance of
 plant species found in dispersal samples and abundance of plant species
 found in the vegetation of the study site. We also included plant traits
 related to seed dispersal. Metadata are given on the second
 sheet.Data-Albert_et_al_2015.xls
DOI: 10.5061/dryad.rf623
title: Data from: Local origin of global contact numbers in frictional ellipsoid packings

description: In particulate soft matter systems the average number of contacts Z of a
 particle is an important predictor of the mechanical properties of the
 system. Using x-ray tomography, we analyze packings of frictional, oblate
 ellipsoids of various aspect ratios α, prepared at different global volume
 fractions ϕg. We find that Z is a monotonically increasing function of ϕg
 for all α. We demonstrate that this functional dependence can be explained
 by a local analysis where each particle is described by its local volume
 fraction ϕl computed from a Voronoi tessellation. Z can be expressed as an
 integral over all values of ϕl: Z(ϕg,α,X)=∫Zl(ϕl,α,X)P(ϕl|ϕg)dϕl. The
 local contact number function Zl(ϕl,α,X) describes the relevant physics in
 term of locally defined variables only, including possible higher order
 terms X. The conditional probability P(ϕl|ϕg) to find a specific value of
 ϕl given a global packing fraction ϕg is found to be independent of α and
 X. Our results demonstrate that for frictional particles a local approach
 is not only a theoretical requirement but also feasible.
description: Ellipsoid_Packings_Schaller_PRL_2015_Configurations.tarThis data contains particle positions and orientations of ellipsoid packings prepared with different preparation methods and compactified by tapping. The packings are imaged by X-Ray-tomography at 64mu/voxel.
DOI: 10.17026/ar/t8wayf
title: IVO-P_BPA1 Aan weerszijden van de Waterdijk

description: &lt;p&gt;Binnen het onderzoeksgebied zijn archeologische resten aangetroffen uit verschillende perioden. De aard, datering en ruimtelijke verspreiding van deze sporen en vondsten hebben geleid tot het definiren van vier vindplaatsen enigszins verspreid over het onderzoeksgebied. Binnen deze vindplaatsen zijn meerdere chronologische faseringen of deelvindplaatsen aan te wijzen, die gedateerd zijn op basis van het aangetroffen aardewerk in de proefsleuven en sporen. De deelvindplaatsen worden binnen de vindplaatsen onderscheiden om de chronologische dichtheid van de vindplaats als geheel inzichtelijk te maken. In totaal zijn 20 deelvindplaatsen onderscheidden. De deelvindplaatsen bestaan uit nederzettingssporen en vondsten uit de vroeg-neolithicum tot en met de late middeleeuwen en nieuwe tijd, en sporen uit de Tweede Wereldoorlog. De zones die als vindplaats A, B, C en D zijn aangewezen, scoren zowel op basis van de fysieke kwaliteit als inhoudelijke kwaliteit gemiddeld of bovengemiddeld en zijn daarmee behoudenswaardig. Hiermee is een vervolgonderzoek in de vorm van een opgraving gerechtvaardigd, indien deze vindplaatsen niet in situ behouden kunnen blijven.&lt;/p&gt;
DOI: 10.5061/dryad.8378
title: Data from: The effects of weak genetic perturbations on the transcriptome of the wing imaginal disc, and its association with wing shape in Drosophila melanogaster

description: A major objective of genomics is to elucidate the mapping between
 genotypic and phenotypic space as a step toward understanding how small
 changes in gene function can lead to elaborate phenotypic changes. One
 approach that has been utilized is to examine overall patterns of
 co-variation between phenotypic variables of interest, such as morphology,
 physiology and behavior, and underlying aspects of gene activity, in
 particular transcript abundance on a genome wide scale. Numerous studies
 have demonstrated that such patterns of co-variation occur, although these
 are often between samples with large numbers of unknown genetic
 differences (different strains, or even species) or perturbations of large
 effect (sexual dimorphism, or strong loss of function mutations), that may
 represent physiological changes outside of the normal experiences of the
 organism. We used weak mutational perturbations in genes affecting wing
 development in Drosophila melanogaster, that influence wing shape relative
 to a co-isogenic wild-type. We profiled transcription of 1150 genes
 expressed during wing development in 27 heterozygous mutants, as well as
 their co-isogenic wild type and one additional wild-type strain. Despite
 finding clear evidence of expression differences between mutants and
 wild-type, transcriptional profiles did not co-vary strongly with shape,
 suggesting that information from transcriptional profiling may not
 generally be predictive of final phenotype. We discuss these results in
 the light of possible attractor states of gene expression, and how this
 would affect interpretation of co-variation between transcriptional
 profiles and other phenotypes.
description: P_element_arrays_vettedMicroarray Data set for this study. See readme file.P_element_probe_labels_illuminaProbe information for microarray datasd_illuminaMicroarray data set for "test" comparison for the scalloped (sd) mutant VS. wild-typepartial_warps_wings_For_PLSline "means" for partial warps and uniform components for wing shape used for the Partial Least Squares. See readme file.alleles_for_P_arraysNames of the alleles used in this study, and corresponding numbers used as identifiers. See readme file.
DOI: 10.82294/dvntxjwbj
title: COPUS. Territorio: Cundinamarca. Sector: Cultura. Año: 2023
title: Dato. Observación estructurada con el protocolo COPUS.

description: Información recopilada durante el año 2023 a partir de observaciones estructuradas realizadas con el protocolo COPUS, dirigidas a educadores artísticos pertenecientes a programas de formación en educación artística y cultural del sector Cultura (educación informal) en el departamento de Cundinamarca.
DOI: 10.5061/dryad.mf3rb
title: Data from: Glucagon-like peptide-1 receptor agonist Liraglutide has anabolic bone effects in ovariectomized rats without diabetes

description: Recently, a number of studies have demonstrated the potential beneficial
 role for novel anti-diabetic GLP-1 receptor agonists (GLP-1RAs) in the
 skeleton metabolism in diabetic rodents and patients. In this study, we
 evaluated the impacts of the synthetic GLP-1RA Liraglutide on bone mass
 and quality in osteoporotic rats induced by ovariectomy (OVX) but without
 diabetes, as well as its effect on the adipogenic and osteoblastogenic
 differentiation of bone marrow stromal cells (BMSCs). Three months after
 sham surgery or bilateral OVX, eighteen 5-month old female Wistar rats
 were randomly divided into three groups to receive the following
 treatments for 2 months: (1) Sham + normal saline; (2) OVX + normal
 saline; and (3) OVX + Liraglutide (0.6 mg/day). As revealed by micro-CT
 analysis, Liraglutide improved trabecular volume, thickness and number,
 increased BMD, and reduced trabecular spacing in the femurs in OVX rats;
 similar results were observed in the lumbar vertebrae of OVX rats treated
 with Liraglutide. Following in vitro treatment of rat and human BMSCs with
 10 nM Liraglutide, there was a significant increase in the mRNA expression
 of osteoblast-specific transcriptional factor Runx2 and the osteoblast
 markers alkaline phosphatase (ALP) and collagen ?1 (Col-1), but a
 significant decrease in peroxisome proliferator-activated receptor ?
 (PPAR?). In conclusion, our results indicate that the anti-diabetic drug
 Liraglutide can exert a bone protective effect even in non-diabetic
 osteoporotic OVX rats. This protective effect is likely attributable to
 the impact of Liraglutide on the lineage fate determination of BMSCs.
description: Raw
 data
DOI: 10.60493/5qarf-h7p73
title: List of tweet ids and metadata collected in preparation of Schopper/Wiertz (under revision): "Shaping geopolitical worldviews online: the 'Great Reset' conspiracy narrative on Twitter"

description: File: schopper-wiertz-under-revision-tweets-meta.csv
Description: Full list of tweet ids and metadata collected in preparation of the preprint Schopper/Wiertz: Shaping geopolitical worldviews online: the "Great Reset" conspiracy narrative on Twitter (pre-print under revision; preprint available at https://doi.org/10.13140/RG.2.2.24748.07040). Please refer to the published article for details on methods and results.
DOI: 10.5061/dryad.h06r3
title: Data from: Genome-wide scans reveal cryptic population structure in a dry-adapted eucalypt

description: Genome-wide DArTseq scans of 268 individuals of Eucalyptus salubris,
 distributed along an aridity gradient in southwestern Australia, revealed
 cryptic population structure that appears to signal hitherto unappreciated
 ecotypic differentiation and barriers to gene flow. Genome-wide scans were
 undertaken on 30 wild-sampled individuals from each of nine populations;
 10 individuals per population were measured for habit and functional
 traits. DArTseq generated 16,122 high-quality markers, of which 56.3 %
 located to E. grandis chromosomes. Genetic affinities of the nine
 populations were only weakly correlated with geographic distances. Rather,
 populations appeared to form two distinct molecular lineages that
 maintained their distinctiveness in an area of geographic overlap.
 Twenty-four outlier markers signalled divergent selection and
 differentiation of the two putative lineages. Populations from the two
 lineages were phenotypically differentiated in leaf thickness, specific
 leaf area (SLA) and leaf nitrogen per unit mass (Nmass). The more
 northerly lineage (with thinner leaves) occurred in hotter, drier
 conditions with higher radiation. Populations of the more southerly
 lineage occurred on soils that were relatively low in phosphorus; the
 trees had thicker leaves, lower SLA and lower leaf Nmass, consistent with
 general responses to low nutrient levels. While historic isolation and
 drift may have contributed to the cryptic population structure observed,
 there is evidence of ecotypic adaptation, which may provide an exogenous
 barrier to gene flow. This study highlights the power of new molecular
 technologies to provide novel insights into the genetic architecture of
 wild populations.
description: Data underpinning the
 results in TGG Steane et al. 2015This excel file
 comprises five sheets of data (relating to Eucalyptus salubris population
 differentiation), each with an accompanying page of explanatory notes. The
 information contained herein includes: (1) population level climate data
 from ANUCLIM; (2) population level soil data; (3) population level isotope
 data relating to physiological measurements; (4) morphological
 measurements from ten individuals of each population; and (5) dominant
 DArT marker data from each of about 30 trees per
 population.EucalyptusSalubrisData_TGG_DRYAD_100315.xlsx
DOI: 10.5061/dryad.rb3jp
title: Data from: Density-dependent, central-place foraging in a grazing herbivore: competition and trade-offs in time allocation near water

description: Optimal foraging theory addresses one of the core challenges of ecology:
 predicting the distribution and abundance of species. Tests of hypotheses
 of optimal foraging, however, often focus on a single conceptual model
 rather than drawing upon the collective body of theory, precluding
 generalization. Here we demonstrate links between two established
 theoretical frameworks predicting animal movements and resource use:
 central-place foraging and density-dependent habitat selection. Our goal
 is to better understand how the nature of critical, centrally placed
 resources like water (or minerals, breathing holes, breeding sites, etc.)
 might govern selection for food (energy) resources obtained elsewhere – a
 common situation for animals living in natural conditions. We empirically
 test our predictions using movement data from a large herbivore
 distributed along a gradient of water availability (feral horses, Sable
 Island, Canada, 2008–2013). Horses occupying western Sable Island obtain
 freshwater at ponds while in the east horses must drink at self-excavated
 wells (holes). We studied the implications of differential access to water
 (time needed for a horse to obtain water) on selection for vegetation
 associations. Consistent with predictions of density-dependent habitat
 selection, horses were reduced to using poorer-quality habitat (heathland)
 more than expected close to water (where densities were relatively high),
 but were free to select for higher-quality grasslands farther from water.
 Importantly, central-place foraging was clearly influenced by the type of
 water-source used (ponds vs. holes, the latter with greater time
 constraints on access). Horses with more freedom to travel (those using
 ponds) selected for grasslands at greater distances and continued to
 select grasslands at higher densities, whereas horses using water holes
 showed very strong density-dependence in how habitat could be selected.
 Knowledge of more than one theoretical framework may be required to
 explain observed variation in foraging behavior of animals where multiple
 constraints simultaneously influence resource selection.
description: AllYears_4000mBufferCoordinates of the centroids of every horse movement-based (4000m radius) buffer and counts of individuals and bands inside those buffers for each year (2008-2013).distancewater_densityFor each random location calculated for the RSF analysis: distance to water, number of horses centroids in a 4000m buffer (centered on the random location) during the year associated with the random location.RSFdataReal and random locations used for the RSF analysis with zone, distance to water, and habitat type.Time_at_waterDrinking time table describing for each horse studied the time spent drinking, the number of horses present, and the type of water source.