cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25919/5c470e3f053de
title: Parkes observations for project P456 semester 2018OCTS_23

description: The Parkes Pulsar Timing Array (PPTA) project has three primary goals: (a) detection of gravitational waves from astronomical sources, (b) establishment of a pulsar timescale, and (c) improvement of our understanding of Solar-system dynamics. The PPTA is the oldest of three international pulsar timing groups. We have the smallest telescope and the smallest group, but the best measurements and the best results. Our bound on the strength of the incoherent gravitational wave background is the only bound which significantly constrains theoretical models. We have maintained our leading position because: we have the southern sky; we have a small but well-focussed group; we have the best-calibrated receivers; and we have been able to observe with an almost regular cadence of 15 to 20 days at three different wavelengths. With this proposal we aim to maintain our pre-eminent position in the field.

Unlike most observing proposals, this is a continuing proposal for which the observations will continue to improve bounds on ultra-low-frequency gravitational waves until they are finally detected. Continued Parkes observations will remain valuable at least until the first stage of the SKA is able to improve on our sensitivity and observing cadence. Even after the gravitational wave background is detected we will want to continue observations in support of the nascent field of gravitational wave astronomy!
DOI: 10.25919/5c470eb55af9e
title: Parkes observations for project P456 semester 2018OCTS_24

description: The Parkes Pulsar Timing Array (PPTA) project has three primary goals: (a) detection of gravitational waves from astronomical sources, (b) establishment of a pulsar timescale, and (c) improvement of our understanding of Solar-system dynamics. The PPTA is the oldest of three international pulsar timing groups. We have the smallest telescope and the smallest group, but the best measurements and the best results. Our bound on the strength of the incoherent gravitational wave background is the only bound which significantly constrains theoretical models. We have maintained our leading position because: we have the southern sky; we have a small but well-focussed group; we have the best-calibrated receivers; and we have been able to observe with an almost regular cadence of 15 to 20 days at three different wavelengths. With this proposal we aim to maintain our pre-eminent position in the field.

Unlike most observing proposals, this is a continuing proposal for which the observations will continue to improve bounds on ultra-low-frequency gravitational waves until they are finally detected. Continued Parkes observations will remain valuable at least until the first stage of the SKA is able to improve on our sensitivity and observing cadence. Even after the gravitational wave background is detected we will want to continue observations in support of the nascent field of gravitational wave astronomy!
DOI: 10.5281/zenodo.2546682
title: Crystal structure of d(CCGGGGTACCCCGG)2 at 1.4 Å resolution.

description: The X-ray crystal structure of the DNA tetradecamer sequence d(CCGGGGTACCCCGG)<sub>2</sub> is reported at 1.4 Å resolution in the tetragonal space group P4<sub>1</sub>2<sub>1</sub>2. The sequence was designed to fold as a four-way junction. However, it forms an A-type double helix in the presence of barium chloride. The metal ion could not be identified in the electron-density map. The crystallographic asymmetric unit consists of one A-type double helix with 12 base pairs per turn, in contrast to 11 base pairs per turn for canonical A-DNA. A large number of solvent molecules have been identified in both the grooves of the duplex and around the backbone phosphate groups.
description: Acknowledgement to Department of Biotechnology, Government of India for data collection facilities at BM14 beamline, ESRF, France.
description: {"references": ["Gabadinho et al. (2010). J Synchrotron Radiat. 17: 700\u2013707."]}
DOI: 10.5281/zenodo.2546683
title: Crystal structure of d(CCGGGGTACCCCGG)2 at 1.4 Å resolution.

description: The X-ray crystal structure of the DNA tetradecamer sequence d(CCGGGGTACCCCGG)<sub>2</sub> is reported at 1.4 Å resolution in the tetragonal space group P4<sub>1</sub>2<sub>1</sub>2. The sequence was designed to fold as a four-way junction. However, it forms an A-type double helix in the presence of barium chloride. The metal ion could not be identified in the electron-density map. The crystallographic asymmetric unit consists of one A-type double helix with 12 base pairs per turn, in contrast to 11 base pairs per turn for canonical A-DNA. A large number of solvent molecules have been identified in both the grooves of the duplex and around the backbone phosphate groups.
description: Acknowledgement to Department of Biotechnology, Government of India for data collection facilities at BM14 beamline, ESRF, France.
description: {"references": ["Gabadinho et al. (2010). J Synchrotron Radiat. 17: 700\u2013707."]}
DOI: 10.25919/5c471bed1992d
title: Parkes observations for project P971 semester 2018OCTS_15

description: We propose timing observations of the relativistic pulsar - white-dwarf binary PSR J1141-6545. This unique system offers access to a wide range of physics, from relativistic phenomena through pulsar emission cone studies, to the structure and distribution of interstellar plasma along our line-of-sight. The recently installed Parkes Ultra Wide Band Low Frequency (UWL) receiver has opened up the possibility of performing first-ever studies of its orbital dynamics at high temporal resolution and study of the effects of the intra-binary medium on the dispersion and polarisation of the pulse profile. Our analysis of data obtained to date suggests that the pulsar would precess away from our line-of-sight in the next 3-5 years. Hence, regular observations are crucial to maximizing its science outcome
DOI: 10.25919/5c471d33ea88c
title: Parkes observations for project P971 semester 2018OCTS_16

description: We propose timing observations of the relativistic pulsar - white-dwarf binary PSR J1141-6545. This unique system offers access to a wide range of physics, from relativistic phenomena through pulsar emission cone studies, to the structure and distribution of interstellar plasma along our line-of-sight. The recently installed Parkes Ultra Wide Band Low Frequency (UWL) receiver has opened up the possibility of performing first-ever studies of its orbital dynamics at high temporal resolution and study of the effects of the intra-binary medium on the dispersion and polarisation of the pulse profile. Our analysis of data obtained to date suggests that the pulsar would precess away from our line-of-sight in the next 3-5 years. Hence, regular observations are crucial to maximizing its science outcome
DOI: 10.5281/zenodo.2546740
title: Crystal structures of disordered Z-type helices

description: The X-ray crystal structure of a decamer sequence d(CGCGTACGCG) 2 is presented. The sequence is an alternate<br>
pyrimidine-purine repeat and they form disordered, pseudo-continuous left handed Z-type helices. They demonstrate interesting variants of the ‘bundles of columns of helices’ mode of packing.
description: Acknowledgement to UGC-CAS, DBT, and DST-FIST, Government of India.
DOI: 10.5281/zenodo.2546741
title: Crystal structures of disordered Z-type helices

description: The X-ray crystal structure of a decamer sequence d(CGCGTACGCG) 2 is presented. The sequence is an alternate<br>
pyrimidine-purine repeat and they form disordered, pseudo-continuous left handed Z-type helices. They demonstrate interesting variants of the ‘bundles of columns of helices’ mode of packing.
description: Acknowledgement to UGC-CAS, DBT, and DST-FIST, Government of India.
DOI: 10.5286/isis.e.89639732
title: 1790235
DOI: 10.5286/isis.e.89903473
title: 1790247
DOI: 10.5281/zenodo.2546759
title: Crystal structures of disordered Z-type helices

description: The X-ray crystal structure of a tetradecamer sequence d(CGCGCGTACGCGCG)2 is presented. The sequence is an alternate<br>
pyrimidine-purine repeat and they form disordered, pseudo-continuous left handed Z-type helices. They demonstrate interesting variants of the ‘bundles of columns of helices’ mode of packing.
description: Acknowledgement to UGC-CAS, DBT, and DST-FIST. Government of India.
DOI: 10.5281/zenodo.2546760
title: Crystal structures of disordered Z-type helices

description: The X-ray crystal structure of a tetradecamer sequence d(CGCGCGTACGCGCG)2 is presented. The sequence is an alternate<br>
pyrimidine-purine repeat and they form disordered, pseudo-continuous left handed Z-type helices. They demonstrate interesting variants of the ‘bundles of columns of helices’ mode of packing.
description: Acknowledgement to UGC-CAS, DBT, and DST-FIST. Government of India.
DOI: 10.5287/bodleian:7jzqr8ee2
title: Supplementary data to 'EAT-Lancet Commission on healthy diets from sustainable food systems'
DOI: 10.17632/tx5mwvx2hx.1
title: Data for: A Tie2 kinase mutation causing venous malformations increases phosphorylation rates and enhances cooperativity

description: Pymol session of energy minimization and alignment
DOI: 10.17632/5rnznt7wb4.1
title: Data for: Can Earth-like plate tectonics occur in ocean world ice shells?

description: MATLAB software used to perform plate tectonics force balance for ocean world ice shells.
DOI: 10.25919/5c472d26847da
title: Parkes observations for project PX501 semester 2018OCTS_26

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries.  As the observing time has been purchased this proposal (and the related PX500) does not require TAC grading.  The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first (PX500) will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period.  The second type of time (relating to this proposal) will be scheduled in shorter blocks and the data archived with a 10 year embargo.
DOI: 10.15129/9b7c92b3-f7ac-4be7-b0b5-ba31ac30c35c
title: Data for: "Bringing Digital Illumination to the Microscopic Scale: Challenges and Trade-Offs"

description: This data was gathered and used to characterize a setup designed for maskless photo-lithography capable of additional structured light based functionality. The data set features.xlsx, .txt and .pptx files which includes characterization measurements of both the LED array and projected spot. Measurements of the photoresist and features created with it are also included. The power measurements were taken with an optical power meter and the film thickness and feature resolution was measured with a DekTak.
DOI: 10.5281/zenodo.2546817
title: SIMPATICO_ES_Citizenpedia_InterimExport

description: The current package contains the questions and answers created by citizens using the Citizenpedia in the Galicia evaluation of the results of H2020 project SIMPATICO that were undertaken on October 2017. The data is exported from the MongoDB instance that was used to manage all the Citizenpedia content. For more information about the setup for conducting the tests and the results achieved please consult project deliverable "D6.6 SIMPATICO Evaluation Report v1". All project deliverables, except where noted, are public and are available at Zenodo community reachable at https://zenodo.org/communities/h2020-simpatico-692819.

The following caveats need to be highlighted for this data set:

- The format is JSON (Javascript objects) as provided by mongodb export tool. 

- Data is completely anonymized: no traces of personal data for any of the participants can be found in this file.
DOI: 10.17632/7p84fmp3pb.1
title: Data for: Study of Morphology and Degradation of Lunar Craters using Chandrayaan–1 Data
DOI: 10.5281/zenodo.2546811
title: Freesound content analyzed with Audio Commons Audio Extractor V2

description: This dataset contains the outputs of running the second prototype of the Audio Commons Audio Extractor (ACExtractorV2) over 292k clips of the Freesound collection. This version of the audio extractor is described in Deliverable D4.7 of the AudioCommons project, and includes several music properties such as <strong>pitch</strong>, <strong>key</strong> and <strong>tempo</strong> (along with their confidence measures) which can be applied to music samples and music loops. It also includes prototype versions of the timbral models described in Deliverable 5.6.

The preset dataset is structured as a single JSON file with a dictionary in which keys correspond to Freesound sound IDs. For each sound, the full output of the Audio Commons Audio Extractor is provided as another dictionary with the following keys: booming, note_midi, note_confidence, brightness, log_attack_time, sharpness, tonality_confidence, single_event, tempo, roughness, dynamic_range, depth, tempo_confidence, loop, note_frequency, temporal_centroid, loudness, tonality, warmth, hardness, note_name. In some cases, keys might be missing if the audio extractor could not produce a valid output for a specific property and a given file. More information about these audio properties can be found in the aforementioned deliverables and software tools.
DOI: 10.5281/zenodo.2546812
title: Freesound content analyzed with Audio Commons Audio Extractor V2

description: This dataset contains the outputs of running the second prototype of the Audio Commons Audio Extractor (ACExtractorV2) over 292k clips of the Freesound collection. This version of the audio extractor is described in Deliverable D4.7 of the AudioCommons project, and includes several music properties such as <strong>pitch</strong>, <strong>key</strong> and <strong>tempo</strong> (along with their confidence measures) which can be applied to music samples and music loops. It also includes prototype versions of the timbral models described in Deliverable 5.6.

The preset dataset is structured as a single JSON file with a dictionary in which keys correspond to Freesound sound IDs. For each sound, the full output of the Audio Commons Audio Extractor is provided as another dictionary with the following keys: booming, note_midi, note_confidence, brightness, log_attack_time, sharpness, tonality_confidence, single_event, tempo, roughness, dynamic_range, depth, tempo_confidence, loop, note_frequency, temporal_centroid, loudness, tonality, warmth, hardness, note_name. In some cases, keys might be missing if the audio extractor could not produce a valid output for a specific property and a given file. More information about these audio properties can be found in the aforementioned deliverables and software tools.
DOI: 10.15129/534fd2b5-626f-4590-b447-8b090155a8a8
title: Data for: "Role of magnetic field evolution on filamentary structure formation in intense laser-foil interactions"

description: This data corresponds to the experimental and simulation results reported in the publication "Role of magnetic field evolution on filamentary structure formation in intense laser-foil interactions". Simulation data was generated by running EPOCH version 4.8.3 with the input.deck files included. Experimental data was obtained as described in the publication.

Data embargo until 28/02/19
DOI: 10.15139/s3/v8anoc
title: Monmouth University Ohio Poll, Number 156

description: This survey was conducted among Ohio voters in Ohio’s 12th Congressional District August special election.
DOI: 10.3886/e104541v1
title: Proof and certainty: Authors with science-consistent messages frame science issues differently than authors with science-inconsistent messages

description: This is the Read Me file for online materials that supplement Proof and certainty: Authors with science-consistent messages frame science issues differently than authors with science-inconsistent messages by Ralph M. Barnes & Yanwen Xu.<br><br>The data is presented in three CSV files. The three file names are: <br>raw document data<br>raw cognate data<br>proof cognate data for analysis<br><br>Brief column labels can be found in row #2 for all three files. More detailed column labels can be found in row #1 of all three files.<br><br>The coding rubrics are presented in two CSV files. The two file names are:<br>rubric for proof cognates<br>rubric for documents<br><br>Three additional tables can be found in a pdf file named:<br>Supplemental tables<br>Table S1 in the Supplemental tables file contains a list of all the search strings used to select the source documents.<br><br>Source documents have not been uploaded and archived on this site because of copyright issues. However, copies of the source documents may obtained by contacting Ralph Barnes. His current email addresses are:<br>ralph.barnes@montana.edu<br>barnes.183@hotmail.com<br><br><br>
DOI: 10.5255/ukda-sn-853390
title: CCCEP Phase 2: Climate change, non-linear systems and economic decisions 2013-2018
DOI: 10.5281/zenodo.2222433
title: Data for "Sperm motility in modulated microchannels"

description: Data for "Sperm motility in modulated microchannels" as published in NJP.

 

Plots are generated by the jupyter notebook sperm_microchannels.ipynb

All necessary python packages are specified in requirements.txt

 

SETUP:

- use python 2

 - pip install -r requirements.txt

 - jupyter notebook sperm_microchannels.ipynb
DOI: 10.5281/zenodo.2222434
title: Data for "Sperm motility in modulated microchannels"

description: Data for "Sperm motility in modulated microchannels" as published in NJP.

 

Plots are generated by the jupyter notebook sperm_microchannels.ipynb

All necessary python packages are specified in requirements.txt

 

SETUP:

- use python 2

 - pip install -r requirements.txt

 - jupyter notebook sperm_microchannels.ipynb
DOI: 10.6073/pasta/ade2c86744199d7cbf9e01ae2d7b7abe
title: Visual survey of insect communities on Iva frutescens in summer 2013 and 2014 on Sapelo Island, Georgia

description: Visual surveys were conducted in summer 2013 and 2014 to record the insect fauna that occurred on patches of Iva frutescens. Forty-four patches of Iva frutescens at three locations on Sapelo Island, Georgia, were marked for repetitive surveys. Thirty-eight of these patches were sampled in 2014. The patches were visually surveyed every three days from May 29 - June 15, 2013, and from June 1 - July 29, 2014, and the taxon and abundance of insects were recorded. This submission contains three data tables: 1. Insect fauna of Iva patches in 2013. This data set includes observations of 44 patches on 6 sampling dates, and includes Armases crab data. 2. Insect fauna of Iva patches in 2014. This data set includes observations of 38 patches on 20 sampling dates. 3. Structure of Iva patches on Sapelo Island in 2013. This data set contains the dimensions (Length, Width, Height) and surrounding environments of the Iva patches that were surveyed in 2013. The GPS locations of the patches were measured in 2014.
DOI: 10.6073/pasta/65b57945b45783fab8feecff56a00a57
title: Disturbance to permanent monitoring plots at GCE sites 1-10, from 2001 to 2017.

description: We established permanent vegetation monitoring plots in creekbank and midmarsh at GCE sites 1-10 in 2000. A dedicated Juncus zone was later added at sites 10 and 9. Starting in 2001, when we recorded plant sizes, we also noted any disturbance to the plots. Plots were scored as normal (no visible disturbance), disturbed by wrack (wrack present in plots and stems dead or broken), disturbed by snails (&gt;100 Littoraria per square meter and plant biomass low), disturbed by pigs (animal trail through the plot, this mostly happened at site 8 mid-marsh), initial slump (plot at the creekbank sliding into the creek based on movement of pvc poles or formation of a crevasse), and terminal slump (plot had slid far enough down that vegetation had drowned). Plots that experienced terminal slump or could not be found for any reason were scored as lost. Lost plots were replaced with a new plot in the same general area with the plot code incremented by 10. For example if plot 3 was lost, it was replaced by 13, and then in turn by 23.
DOI: 10.6073/pasta/37aa3c3be87ffe376485d4bf5cb50e03
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Aboveground plant biomass, 2009-2017. (Reformatted to ecocomDP Design Pattern)

description: This data package is formatted according to the "ecocomDP", a data package design pattern for ecological community surveys, and data from studies of composition and biodiversity. For more information on the ecocomDP project see https://github.com/EDIorg/ecocomDP/tree/master, or contact EDI https://environmentaldatainitiative.org.

This Level 1 data package was derived from the Level 0 data package found here: https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-bnz&identifier=501&revision=17

The abstract below was extracted from the Level 0 data package and is included for context:

The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions:  1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange?   We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range.  This data set includes aboveground plant biomass from winter warming, summer warming, and control treatment plots at CiPEHR.
DOI: 10.6073/pasta/6414dade560484139ce20b29ea6a260c
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Aboveground plant biomass, 2009-2017. (Reformatted to ecocomDP Design Pattern)

description: This data package is formatted according to the "ecocomDP", a data package design pattern for ecological community surveys, and data from studies of composition and biodiversity. For more information on the ecocomDP project see https://github.com/EDIorg/ecocomDP/tree/master, or contact EDI https://environmentaldatainitiative.org.

This Level 1 data package was derived from the Level 0 data package found here: https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-bnz&identifier=501&revision=17

The abstract below was extracted from the Level 0 data package and is included for context:

The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions:  1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange?   We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range.  This data set includes aboveground plant biomass from winter warming, summer warming, and control treatment plots at CiPEHR.
DOI: 10.5255/ukda-sn-853439
title: CCCEP II: Green growth and jobs in advanced economies 2013-2018
DOI: 10.5061/dryad.46f1n9j/1
title: Plant species relative abundances at Long-Term Mycorrhiza Research Site  in Jun 2016

description: Relative abundances of vascular plants were quantified between June 13 and June 20, 2016, at Long-Term Mycorrhiza Research Site in the University of Guelph Nature Reserve, Guelph, Canada. The method is described in the article.
DOI: 10.25345/c5z89c
title: MassIVE MSV000083351 - TEST Bile Acids
title: Bile acids from 88 different species of animals collected by Lee Hagey and others