cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pz6p6t
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Miconia leatetragona R.Goldenb."
 ]
}

 The dataset includes 17 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174595-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zlt7oa
title: Occurrence Download

description: A dataset containing 6961 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tulipa gesneriana L."
 ]
}

 The dataset includes 6961 records from 137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018990-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yml2a
title: Occurrence Download

description: A dataset containing 56321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sanguisorba L.",
 {
 "or" : [
 "Geometry POLYGON((-11.953125 73.428423,-11.953125 11.867350,60.46875 11.867350,60.46875 73.428423,-11.953125 73.428423))",
 "Geometry POLYGON((196.171875 72.607120,196.171875 13.923403,308.671875 13.923403,308.671875 72.607120,196.171875 72.607120))",
 "Geometry POLYGON((68.90625 73.022591,68.90625 8.407168,191.953124 8.407168,191.953124 73.022591,68.90625 73.022591))"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 56321 records from 371 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072648-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djn7am
title: Occurrence Download

description: A dataset containing 4695 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Asia",
 "OccurrenceStatus is Present",
 "TaxonKey is Certhia familiaris Linnaeus, 1758"
 ]
}

 The dataset includes 4695 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019442-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jssphd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apidae",
 "TaxonKey is Halictidae",
 "TaxonKey is Andrenidae",
 "TaxonKey is Megachilidae",
 "TaxonKey is Colletidae",
 "TaxonKey is Melittidae",
 "TaxonKey is Stenotritidae"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018991-190415153152247/datasets/export for details.
DOI: 10.15468/dl.vldciz
title: Occurrence Download

description: A dataset containing 4341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sapindus L.",
 {
 "or" : [
 "Geometry POLYGON((178.59375 55.379110,178.59375 -54.162433,333.28125 -54.162433,333.28125 55.379110,178.59375 55.379110))",
 "Geometry POLYGON((61.171874 56.170022,61.171874 -45.583289,172.265625 -45.583289,172.265625 56.170022,61.171874 56.170022))"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4341 records from 201 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072649-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ald6ij
title: Occurrence Download

description: A dataset containing 1844 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spio Fabricius, 1785",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 1844 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018994-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rcuyhp
title: Occurrence Download

description: A dataset listing the 153 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Canada",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-123.37904 48.46254,-123.37849 48.46074,-123.37442 48.46033,-123.37441 48.46033,-123.371 48.46118,-123.36933 48.46211,-123.36847 48.46264,-123.36813 48.46314,-123.36777 48.46386,-123.36755 48.46456,-123.36769 48.4652,-123.3688 48.46593,-123.3701 48.46706,-123.37201 48.46893,-123.37282 48.46883,-123.3726 48.46756,-123.3733 48.46729,-123.37311 48.46606,-123.37458 48.46586,-123.37472 48.46585,-123.3758 48.46571,-123.37793 48.46525,-123.37821 48.46469,-123.378 48.46425,-123.37752 48.46289,-123.37904 48.46254))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2014-2014"
 ]
}

 The dataset's 153 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022082-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vpslrf
title: Occurrence Download

description: A dataset containing 1770 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Afzelia africana Sm. ex Pers."
 ]
}

 The dataset includes 1770 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072697-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zjeuwn
title: Occurrence Download

description: A dataset containing 2758 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 {
 "or" : [
 "TaxonKey is Acacia subsessilis A.R.Chapm. & Maslin",
 "TaxonKey is Acacia genistifolia Link",
 "TaxonKey is Acacia saligna (Labill.) H.L.Wendl.",
 "TaxonKey is Acacia paradoxa DC.",
 "TaxonKey is Acacia leucothrix Standl.",
 "TaxonKey is Acacia breviracemosa Britton & Rose",
 "TaxonKey is Acacia polypodioides Standl.",
 "TaxonKey is Acacia wrightii A.Gray",
 "TaxonKey is Acacia retinodes Schltdl.",
 "TaxonKey is Acacia amentacea DC.",
 "TaxonKey is Acacia roemeriana Sheele",
 "TaxonKey is Acacia cornigera (L.) L.",
 "TaxonKey is Acacia coulteri A.Gray",
 "TaxonKey is Acacia constricta A.Gray",
 "TaxonKey is Acacia cochliacantha Humb. & Bonpl."
 ]
 }
 ]
}

 The dataset includes 2758 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018997-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m8sy45
title: Occurrence Download

description: A dataset containing 1276 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Loxodonta cyclotis (Matschie, 1900)"
 ]
}

 The dataset includes 1276 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024584-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0zaqup
title: Occurrence Download

description: A dataset containing 850 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Saururus L.",
 {
 "or" : [
 "Geometry POLYGON((66.09375 58.813741,66.09375 -4.915832,165.9375 -4.915832,165.9375 58.813741,66.09375 58.813741))",
 "Geometry POLYGON((-9.84375 67.609220,-9.84375 39.368279,42.890625 39.368279,42.890625 67.609220,-9.84375 67.609220))",
 "Geometry POLYGON((218.671875 62.267922,218.671875 9.795677,312.1875 9.795677,312.1875 62.267922,218.671875 62.267922))"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 850 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072653-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjl6nz
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Habenaria subauriculata B.L.Rob. & Greenm."
 ]
}

 The dataset includes 24 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018998-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mk4xht
title: Occurrence Download

description: A dataset containing 11597 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amazona finschi (P.L.Sclater, 1864)"
 ]
}

 The dataset includes 11597 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064833-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dftmfm
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Meriania aguaditensis Humberto Mend. & Fern.Alonso"
 ]
}

 The dataset includes 109 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174596-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rn5szt
title: Occurrence Download

description: A dataset containing 225301 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ilex Tourn. ex L."
 ]
}

 The dataset includes 225301 records from 688 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072656-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yc3d6r
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Grosourdya incurvicalcar (J.J.Sm.) Garay"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015607-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.85yhbh
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andryala agardhii Haens."
 ]
}

 The dataset includes 27 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024534-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.32p78k
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alouatta seniculus (Linnaeus, 1766)",
 "Year is one of (2023)",
 "Country is one of (Colombia, Peru, Ecuador)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 136 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064880-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cheb9b
title: Occurrence Download

description: A dataset containing 131296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myotis daubentonii (Kuhl, 1817)",
 "Year 2000-2023"
 ]
}

 The dataset includes 131296 records from 1608 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019491-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3qrwme
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hesperantha ballii Wild"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021528-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sg6an1
title: Occurrence Download

description: A dataset containing 3430 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Sygmodon Blyth, 1840",
 "TaxonKey is Cebus albifrons malitiosus Elliot, 1909",
 "TaxonKey is Molossus coibensis J.A.Allen, 1904",
 "TaxonKey is Marmosa robinsoni isthmica Goldman, 1912",
 "TaxonKey is Grampus griseus (G.Cuvier, 1812)",
 "TaxonKey is Diplomys caniceps (Günther, 1877)",
 "TaxonKey is Molossops temminckii (Burmeister, 1854)",
 "TaxonKey is Mazama gouazoubira sanctaemartae J.A.Allen, 1915",
 "TaxonKey is Cebus albifrons cesarae Hershkovitz, 1949",
 "TaxonKey is Cebus albifrons versicolor Pucheran, 1845",
 "TaxonKey is Nectomys rattus (Pelzeln, 1883)",
 "TaxonKey is Globiocephala Gibson Hill, 1950",
 "TaxonKey is Zygodontomys J.A.Allen, 1897",
 "TaxonKey is Physeter macrocephalus sp. albicans Kerr, 1792",
 "TaxonKey is Lasiurus cinereus (Palisot de Beauvois, 1796)",
 "TaxonKey is Rhogeessa io Thomas, 1903",
 "TaxonKey is Eumops bonariensis nanus (Miller, 1900)",
 "TaxonKey is Delphinus capensis Gray, 1828",
 "TaxonKey is Tapirus terrestris (Linnaeus, 1758)",
 "TaxonKey is Lagothrix lagothricha (Humboldt, 1812)"
 ]
 },
 {
 "or" : [
 "Country is Brazil",
 "Country is El Salvador",
 "Country is Peru",
 "Country is Honduras",
 "Country is Belize",
 "Country is Nicaragua",
 "Country is Colombia",
 "Country is Ecuador",
 "Country is Venezuela (Bolivarian Republic of)",
 "Country is Costa Rica"
 ]
 }
 ]
}

 The dataset includes 3430 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024522-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24036616
title: Prognostic characteristics of T-cell mediated cell killing-related genes in lung adenocarcinoma

description: Constituted by various heterogeneous cells, the tumor microenvironment (TME) is capable of promoting tumor proliferation, invasion, and metastasis through extensive crosstalk. The pivotal factor influencing the survival time of patients and their response to immunotherapy lies in the intratumoral immune environment. We obtained 112 differential genes related to T cell-mediated tumor killing in LUAD by employing bioinformatics analysis on the basis of the TCGA and TISIDB databases. Then the 6-gene prognostic risk score model (<i>CA9</i>, <i>OIP5</i>, <i>TIMP1</i>, <i>SEC11C</i>, <i>FURIN</i>, and <i>TLR10</i>) was constructed by conducting univariate LASSO as well as multivariate Cox regression analyses. The median risk score was taken as the threshold to classify the samples into two groups. Survival analysis revealed that the low-risk group exhibited a more favorable prognosis. Subsequently, the Cox regression analysis combined with clinical information (age, gender, and pathological stage) and the risk score of LUAD patients demonstrated the potential of this model as an independent prognostic factor. The nomogram established based on clinical information and a risk score in combination with the calibration curve indicated that this model had good predictive ability. Notable enrichment of the differential genes from the high- and low-risk groups was discovered in immune-associated processes or pathways, as shown by the GO and KEGG enrichment analyses. The combined use of single-sample gene enrichment analysis (ssGSEA) and immunophenoscore (IPS) demonstrated heightened immune infiltration and IPS scores in the low-risk group, indicating that immunotherapy was likely to show good efficacy in patients from this group. To sum up, the prognostic model of LUAD constructed based on T-cell-mediated cell killing-related genes was not only capable of screening the prognosis of LUAD patients but was also used for screening those LUAD patients with high sensitivity to immunotherapy. Our study offered novel insights into the clinical treatment and prognostic prediction of LUAD patients.
DOI: 10.6084/m9.figshare.24036616.v1
title: Prognostic characteristics of T-cell mediated cell killing-related genes in lung adenocarcinoma

description: Constituted by various heterogeneous cells, the tumor microenvironment (TME) is capable of promoting tumor proliferation, invasion, and metastasis through extensive crosstalk. The pivotal factor influencing the survival time of patients and their response to immunotherapy lies in the intratumoral immune environment. We obtained 112 differential genes related to T cell-mediated tumor killing in LUAD by employing bioinformatics analysis on the basis of the TCGA and TISIDB databases. Then the 6-gene prognostic risk score model (<i>CA9</i>, <i>OIP5</i>, <i>TIMP1</i>, <i>SEC11C</i>, <i>FURIN</i>, and <i>TLR10</i>) was constructed by conducting univariate LASSO as well as multivariate Cox regression analyses. The median risk score was taken as the threshold to classify the samples into two groups. Survival analysis revealed that the low-risk group exhibited a more favorable prognosis. Subsequently, the Cox regression analysis combined with clinical information (age, gender, and pathological stage) and the risk score of LUAD patients demonstrated the potential of this model as an independent prognostic factor. The nomogram established based on clinical information and a risk score in combination with the calibration curve indicated that this model had good predictive ability. Notable enrichment of the differential genes from the high- and low-risk groups was discovered in immune-associated processes or pathways, as shown by the GO and KEGG enrichment analyses. The combined use of single-sample gene enrichment analysis (ssGSEA) and immunophenoscore (IPS) demonstrated heightened immune infiltration and IPS scores in the low-risk group, indicating that immunotherapy was likely to show good efficacy in patients from this group. To sum up, the prognostic model of LUAD constructed based on T-cell-mediated cell killing-related genes was not only capable of screening the prognosis of LUAD patients but was also used for screening those LUAD patients with high sensitivity to immunotherapy. Our study offered novel insights into the clinical treatment and prognostic prediction of LUAD patients.
DOI: 10.6084/m9.figshare.24031965
title: Gbp3 is associated with the progression of lupus nephritis by regulating cell proliferation, inflammation and pyroptosis

description: Lupus nephritis (LN) is a major cause death in patients with systemic lupus erythematosus. We aimed to find the differentially expressed genes (DEGs) in LN and confirm the regulatory mechanism on LN. The mouse model of LN was constructed by subcutaneous injection of pristane. RNA-seq screened 392 up-regulated and 447 down-regulated DEGs in LN mouse model, and KEGG analysis found that the top 20 DEGs were enriched in arachidonic acid metabolism, tryptophan metabolism, etc. The hub genes, Kynu, Spidr, Gbp3, Cbr1, Cyp4b1, and Cndp2 were identified, in which Gbp3 was selected for following study. Afterwards, the function of Gbp3 on the proliferation, inflammation, and pyroptosis of LN was verified by CCK-8, ELISA, and WB in vitro. The results demonstrated that si-Gbp3 promoted cell proliferation and inhibited the levels of inflammatory factors (IL-1β, TNF-α and IL-8) and pyroptosis-related proteins (GSDMD, Caspase-1 and NLRP3) in a cell model of LN. In constrast, Gbp3 overexpression played an opposite role. In summary, Gbp3 promoted the progression of LN via inhibiting cell proliferation and facilitating inflammation and pyroptosis.
DOI: 10.6084/m9.figshare.24031965.v1
title: Gbp3 is associated with the progression of lupus nephritis by regulating cell proliferation, inflammation and pyroptosis

description: Lupus nephritis (LN) is a major cause death in patients with systemic lupus erythematosus. We aimed to find the differentially expressed genes (DEGs) in LN and confirm the regulatory mechanism on LN. The mouse model of LN was constructed by subcutaneous injection of pristane. RNA-seq screened 392 up-regulated and 447 down-regulated DEGs in LN mouse model, and KEGG analysis found that the top 20 DEGs were enriched in arachidonic acid metabolism, tryptophan metabolism, etc. The hub genes, Kynu, Spidr, Gbp3, Cbr1, Cyp4b1, and Cndp2 were identified, in which Gbp3 was selected for following study. Afterwards, the function of Gbp3 on the proliferation, inflammation, and pyroptosis of LN was verified by CCK-8, ELISA, and WB in vitro. The results demonstrated that si-Gbp3 promoted cell proliferation and inhibited the levels of inflammatory factors (IL-1β, TNF-α and IL-8) and pyroptosis-related proteins (GSDMD, Caspase-1 and NLRP3) in a cell model of LN. In constrast, Gbp3 overexpression played an opposite role. In summary, Gbp3 promoted the progression of LN via inhibiting cell proliferation and facilitating inflammation and pyroptosis.
DOI: 10.6084/m9.figshare.23573933
title: Patients with dermatomyositis shared partially similar transcriptome signature with COVID-19 infection

description: Dermatomyositis (DM) is an autoimmune disease that primarily affects the skin and skeletal muscle. Virus infection and type I interferon-related signaling pathways play an important role in the pathogenesis of dermatomyositis. In this study, we found that the skin of patients with DM and the skin of patients with COVID-19 have similar transcriptional profiles, and identified key genes involved in dermatomyositis based on bioinformatics analysis. These hub-genes might be served as potential biomarkers for the early diagnosis and therapy of DM, including <i>MX1, ISG15, IFIT3, IFIT1, RSAD2, IFIT2, IFI6, XAF1, IRF9, MX2</i>.
DOI: 10.6084/m9.figshare.23573933.v1
title: Patients with dermatomyositis shared partially similar transcriptome signature with COVID-19 infection

description: Dermatomyositis (DM) is an autoimmune disease that primarily affects the skin and skeletal muscle. Virus infection and type I interferon-related signaling pathways play an important role in the pathogenesis of dermatomyositis. In this study, we found that the skin of patients with DM and the skin of patients with COVID-19 have similar transcriptional profiles, and identified key genes involved in dermatomyositis based on bioinformatics analysis. These hub-genes might be served as potential biomarkers for the early diagnosis and therapy of DM, including <i>MX1, ISG15, IFIT3, IFIT1, RSAD2, IFIT2, IFI6, XAF1, IRF9, MX2</i>.