cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.321599
title: Postural Optimization For A Safe And Comfortable Human-Robot Interaction: Experiment Dataset

description: In human-robot collaboration the robot's behavior impacts the worker's safety, comfort, and his acceptance of the robotic system. In this paper we address the problem of how to improve the worker's posture during human-robot collaboration. Using postural assessment techniques, and a personalized human kinematic model, we optimize the model body posture to fulfill a task while avoiding uncomfortable or unsafe postures. We then derive a robotic behavior that leads the worker towards that improved posture. We validate our approach in an experiment involving a joint task with 39 human subjects and a Baxter torso-humanoid robot.

This repository contains the anonymized recorded data of our experiment. For all the subjects, we have included their recorded posture, using a motion capture system, and a video taken from a camera located on the robot head. Each data is divided by subjects and by tested conditions. In a separate file, we also include the result of the survey answered alongside the experiment.
DOI: 10.5281/zenodo.572977
title: A Dataset Of User Generated Videos From Edinburgh Festival 2016

description: Files include footage from performances of the trEd Dance group (edfest8, edfest9 and edfest10) and Rebecca Wilson’s ‘The Strawberry Show’ (edfest6 and edfest7) taken during Edinburgh Festival 2016  by BBC R&D as part of the COGNITUS project funded from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 687605. BBC©2016. Further details about the content are available in the accompanying paper <em>"An Open Access Dataset of User Generated Videos from Edinburgh Festival 2016"</em>. If you have any queries please contact BBC R&D at cognitus-h2020@rd.bbc.co.uk. This notice must remain attached to any copy of the content.
DOI: 10.5281/zenodo.7554707
title: Twitter

description: The files:<br> texts.txt: Document set (text). One per line.<br> score.txt: Document class whose index is associated with texts.txt<br> split_&lt;k&gt;.pkl: pandas DataFrame with k-cross validation partition. The .zip contains all aforementioned files + the tfidf representation in the CSR matrix format.
DOI: 10.5281/zenodo.556727
title: Transcriptional Decomposition Reveals Active Chromatin Architectures And Cell Specific Regulatory Interactions

description: <strong>Summary</strong>

Resource data across the 76 cell types from FANTOM5 analysed in our paper titled "Transcriptional decomposition reveals active chromatin architectures and cell specific regulatory interactions".

<strong>Project abstract</strong>

Gene transcription is influenced by favourable chromosome positioning and chromatin architectures bringing regulatory elements in close proximity. However, it is unclear to what extent transcription is attributable to topological organisation or to gene-specific regulatory programs. Here, we develop a strategy to transcriptionally decompose expression data into two main components reflecting the positional relationship of neighbouring transcriptional units and effects independent from their positioning. 

We demonstrate that the positionally dependent component is highly informative of topological domain activity and organisation, revealing boundaries and chromatin compartments. Furthermore, features derived from transcriptional components can accurately predict individual chromatin interactions. We systematically investigate regulatory interactions and observe different transcriptional attributes governing long- and short-range interactions. Finally, we assess differences in regulatory organisations across 76 human cell types. In all, we demonstrate a close relationship between transcription and topological chromatin architecture and provide an unprecedented resource for investigations of regulatory organisations across cell types.

<strong>Included files</strong>

PD_component_76_cell_types.tar.gz - Contains the positionally dependent (PD) components for 76 human cell types.

PD_sd_component_76_cell_types.tar.gz - Contains the standard deviations of the positionally dependent (PD_sd) components for 76 human cell types.

PI_component_76_cell_types.tar.gz - Contains the positionally independent (PI) components for 76 human cell types.

PI_sd_component_76_cell_types.tar.gz - Contains the standard deviations  of the positionally independent (PI_sd) components for 76 human cell types.

predicted_EP_interactions_76_cell_types.tar.gz - Contains predicted enhancer-promoter interactions for 76 human cell types.

predicted_boundaries_76CT.txt - Matrix with 76 columns representing human cell types and 10kb genome-wide bins as rows, coded as 0 or 1 according to whether a XAD boundary was predicted in the bin for a given cell type.
DOI: 10.5281/zenodo.166859
title: Application Of High-Throughput Sequencing (Hts) Metabarcoding To Diatom Biomonitoring: Do Dna Extraction Methods Matter?

description: The 8 benthic samples from Mainland France (stream Edian, stream Aire, lake Geneva), Sweden (stream Dåmman, Agricultural stream, lake Båtkåjaure) and Mayotte (stream Dapani, stream Majimbini) were collected by scraping material from the surface of stones, following the French standard (AFNOR 2007) used in routine biomonitoring programs.DNA was extracted from each sample (2 replicates) using five DNA extraction methods, followed by the amplification of a short rbcL DNA barcode (312bp) specific to diatoms. PCR products were then sequenced in one random direction using the Ion Torrent™ Personal Genome Machine® (PGM) System according to the manufacturer’s instructions. The data file contains one fastq file per library sequenced with the raw DNA reads, as provided by the sequencing platform (demultiplexing performed by the sequencing platform). An excel file is also provided to make the link between the fastq file number and the sample information (sample origin, DNA extraction method used, number of raw reads).
DOI: 10.5281/zenodo.31924
title: Off-Grid Solar Energy Services Enabled And Evaluated Through Information Technology

description: zip file with code notebooks for paper.
DOI: 10.5281/zenodo.13148481
title: Binary black-hole simulation SXS:BBH:1952

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148482
title: Binary black-hole simulation SXS:BBH:1952

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.6084/m9.figshare.26422273
title: Answers to the survey

description: Answers to the survey
DOI: 10.6084/m9.figshare.26422273.v1
title: Answers to the survey

description: Answers to the survey
DOI: 10.5281/zenodo.13148485
title: Binary black-hole simulation SXS:BBH:2058

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148486
title: Binary black-hole simulation SXS:BBH:2058

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148491
title: Binary black-hole simulation SXS:BBH:1892

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148492
title: Binary black-hole simulation SXS:BBH:1892

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148497
title: Binary black-hole simulation SXS:BBH:1538

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148498
title: Binary black-hole simulation SXS:BBH:1538

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.15468/dl.ebe3ud
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.29_1",
 "TaxonKey is Artemisia minor Jacquem. ex Besser"
 ]
}

 The dataset includes 115 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043964-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13148505
title: Binary black-hole simulation SXS:BBH:1533

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148506
title: Binary black-hole simulation SXS:BBH:1533

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.15468/dl.qhx4t7
title: Occurrence Download

description: A dataset containing 5097 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Russian Federation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Pinus sibirica Du Tour"
 ]
}

 The dataset includes 5097 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043965-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13148510
title: Binary black-hole simulation SXS:BBH:1624

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148511
title: Binary black-hole simulation SXS:BBH:1624

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148512
title: Binary black-hole simulation SXS:BBH:1638

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148513
title: Binary black-hole simulation SXS:BBH:1638

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.6084/m9.figshare.24188217
title: Supplementary Table S1-6.xlsx

description: Supplementary Table S1-6 for the study entitled "Bioinformatics analysis of oxidative stress genes in the pathogenesis of ulcerative colitis based on competing endogenous RNA regulatory network"
DOI: 10.6084/m9.figshare.24188217.v3
title: Supplementary Table S1-6.xlsx

description: Supplementary Table S1-6 for the study entitled "Bioinformatics analysis of oxidative stress genes in the pathogenesis of ulcerative colitis based on competing endogenous RNA regulatory network"
DOI: 10.6084/m9.figshare.24188217.v2
title: Supplementary Table S1-7.xlsx

description: Supplementary Table S1-7 for the study entitled "Bioinformatics analysis of oxidative stress genes in the pathogenesis of ulcerative colitis based on competing endogenous RNA regulatory network"
DOI: 10.15468/dl.s4b4en
title: Occurrence Download

description: A dataset containing 8799 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "PublishingCountry is New Zealand",
 "TaxonKey is Apteryx Shaw, 1813",
 "Year 2000-2024"
 ]
}

 The dataset includes 8799 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043966-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mk4pf3
title: Occurrence Download

description: A dataset containing 372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Issue is The taxon ID was not used in backbone matching",
 "TaxonKey is Prionailurus bengalensis (Kerr, 1792)"
 ]
}

 The dataset includes 372 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043967-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13148516
title: Binary black-hole simulation SXS:BBH:1977

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148517
title: Binary black-hole simulation SXS:BBH:1977

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148523
title: Binary black-hole simulation SXS:BBH:1972

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148524
title: Binary black-hole simulation SXS:BBH:1972

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.6084/m9.figshare.23609646
title: Dataset_Details.xlsx

description: This xlsx file serves as a repository of information regarding the patients and includes birth weight, gestation age, and gender.
DOI: 10.15468/dl.3cpsmd
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "TaxonKey is Fraxinus pennsylvanica Marshall"
 ]
}

 The dataset's 3 records were derived from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043963-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvxfk7
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.29_1",
 "TaxonKey is Stipa roborowskyi Roshev."
 ]
}

 The dataset includes 117 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043968-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13148527
title: Binary black-hole simulation SXS:BBH:2047

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148528
title: Binary black-hole simulation SXS:BBH:2047

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148532
title: Binary black-hole simulation SXS:BBH:2061

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148533
title: Binary black-hole simulation SXS:BBH:2061

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.6084/m9.figshare.25858399
title: Single-cell profiling identifies a CD8<sup>bright</sup> CD244<sup>bright</sup> Natural Killer cell subset that reflects disease activity in HLA-A29-positive <i>birdshot chorioretinopathy</i>.

description: Birdshot chorioretinopathy is an inflammatory eye condition strongly associated with MHC-I allele HLA-A29. The striking association with MHC-I suggests involvement of T cells, whereas natural killer (NK) cell involvement remains largely unstudied. Here we show that HLA-A29-positive birdshot chorioretinopathy patients have a skewed NK cell pool containing expanded CD16 positive NK cells which produce more proinflammatory cytokines. These NK cells contain populations that express CD8A which is involved in MHC-I recognition on target cells, display gene signatures indicative of high cytotoxic activity (GZMB, PRF1 and ISG15), and signaling through NK cell receptor CD244 (SH2D1B). Long-term monitoring of a cohort of birdshot chorioretinopathy patients with active disease identifies a population of CD8bright CD244bright NK cells, which rapidly declines to normal levels upon clinical remission following successful treatment. Collectively, these studies implicate CD8bright CD244bright NK cells in birdshot chorioretinopathy.
DOI: 10.6084/m9.figshare.25858399.v1
title: Single-cell profiling identifies a CD8<sup>bright</sup> CD244<sup>bright</sup> Natural Killer cell subset that reflects disease activity in HLA-A29-positive <i>birdshot chorioretinopathy</i>.

description: Birdshot chorioretinopathy is an inflammatory eye condition strongly associated with MHC-I allele HLA-A29. The striking association with MHC-I suggests involvement of T cells, whereas natural killer (NK) cell involvement remains largely unstudied. Here we show that HLA-A29-positive birdshot chorioretinopathy patients have a skewed NK cell pool containing expanded CD16 positive NK cells which produce more proinflammatory cytokines. These NK cells contain populations that express CD8A which is involved in MHC-I recognition on target cells, display gene signatures indicative of high cytotoxic activity (GZMB, PRF1 and ISG15), and signaling through NK cell receptor CD244 (SH2D1B). Long-term monitoring of a cohort of birdshot chorioretinopathy patients with active disease identifies a population of CD8bright CD244bright NK cells, which rapidly declines to normal levels upon clinical remission following successful treatment. Collectively, these studies implicate CD8bright CD244bright NK cells in birdshot chorioretinopathy.
DOI: 10.6084/m9.figshare.26083939
title: Atavistic strategy for the treatment of hyperuricemia via ionizable liposomal mRNA

description: The liver from each mouse was collected, and samples were prepared for metabolomics analysis. The analysis was performed by Hangzhou Kaitai Biotech Co., Ltd. (Hangzhou, China). During the study explained above, two mice from each group were euthanized and sacrificed to fully understand the metabolic changes in the serum. The serum from each mouse was collected, and samples were prepared for metabolomics analysis. The analysis was performed by Shenzhen BGI Co., LTD (Shenzhen, China).
DOI: 10.6084/m9.figshare.26083939.v1
title: Atavistic strategy for the treatment of hyperuricemia via ionizable liposomal mRNA

description: The liver from each mouse was collected, and samples were prepared for metabolomics analysis. The analysis was performed by Hangzhou Kaitai Biotech Co., Ltd. (Hangzhou, China). During the study explained above, two mice from each group were euthanized and sacrificed to fully understand the metabolic changes in the serum. The serum from each mouse was collected, and samples were prepared for metabolomics analysis. The analysis was performed by Shenzhen BGI Co., LTD (Shenzhen, China).
DOI: 10.6084/m9.figshare.26422324
title: STROBE checklist for “Examining the Effects of Anxiety and Education Level on Mental Health: The Role of Spiritual Intelligence as an Intervening Variable in Post COVID-19 Patients in Indonesia"

description: STROBE checklist for “Examining the Effects of Anxiety and Education Level on Mental Health: The Role of Spiritual Intelligence as an Intervening Variable in Post COVID-19 Patients in Indonesia"
DOI: 10.5281/zenodo.13148537
title: Binary black-hole simulation SXS:BBH:1817

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148538
title: Binary black-hole simulation SXS:BBH:1817

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.6084/m9.figshare.26316862
title: Highly Conductive and Stretchable Nanostructured Ionogels for 3D Printing Capacitive Sensors with Superior Performance

description: The data generated in this study are provided in the Source Data file.
DOI: 10.6084/m9.figshare.26316862.v1
title: Highly Conductive and Stretchable Nanostructured Ionogels for 3D Printing Capacitive Sensors with Superior Performance

description: The data generated in this study are provided in the Source Data file.
DOI: 10.6084/m9.figshare.25737993.v1
title: Conventional Superconductivity in the Doped Kagome Superconductor Cs(V0.86Ta0.14)3Sb5 from Vortex Lattice Studies

description: Data plotted in Fig. 1b, 2, 3 and 4
DOI: 10.5281/zenodo.13148545
title: Binary black-hole simulation SXS:BBH:1832

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148546
title: Binary black-hole simulation SXS:BBH:1832

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.6084/m9.figshare.26422345
title: Questionnaire for "Examining the Effects of Anxiety and Education Level on Mental Health: The Role of Spiritual Intelligence as an Intervening Variable in Post COVID-19 Patients in Indonesia"

description: Questionnaire for "Examining the Effects of Anxiety and Education Level on Mental Health: The Role of Spiritual Intelligence as an Intervening Variable in Post COVID-19 Patients in Indonesia"
DOI: 10.15468/dl.u2ddbr
title: Occurrence Download

description: A dataset containing 75005 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Insecta)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-3.26205847299997 4.73877397199999,1.20021458600007 4.73877397199999,1.20021458600007 11.1748416670001,-3.26205847299997 11.1748416670001,-3.26205847299997 4.73877397199999))"
 ]
}

 The dataset includes 75005 records from 178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043969-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.428ezb
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.29_1",
 "TaxonKey is Stipa subsessiliflora (Rupr.) Roshev."
 ]
}

 The dataset includes 92 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043971-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qybfuc
title: Occurrence Download

description: A dataset containing 4768 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Antarctic Penguin Biogeography Project: Database of abundance and distribution for the Adélie, chinstrap, gentoo, emperor, macaroni, and king penguin south of 60 S"
 ]
}

 The dataset includes 4768 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043973-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13148557
title: Binary black-hole simulation SXS:BBH:2068

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148558
title: Binary black-hole simulation SXS:BBH:2068

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148561
title: Binary black-hole simulation SXS:BBH:1732

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148562
title: Binary black-hole simulation SXS:BBH:1732

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148567
title: Binary black-hole simulation SXS:BBH:1727

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148568
title: Binary black-hole simulation SXS:BBH:1727

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148575
title: Binary black-hole simulation SXS:BBH:1894

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148576
title: Binary black-hole simulation SXS:BBH:1894

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148589
title: Binary black-hole simulation SXS:BBH:1969

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148590
title: Binary black-hole simulation SXS:BBH:1969

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148591
title: Binary black-hole simulation SXS:BBH:2043

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148592
title: Binary black-hole simulation SXS:BBH:2043

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148599
title: Binary black-hole simulation SXS:BBH:1535

description: Simulation of a black-hole binary system evolved by the SpEC code.
DOI: 10.5281/zenodo.13148600
title: Binary black-hole simulation SXS:BBH:1535

description: Simulation of a black-hole binary system evolved by the SpEC code.