cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh3596165.08fu
title: SH3596165.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3596166.08fu
title: SH3596166.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3596167.08fu
title: SH3596167.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3596168.08fu
title: SH3596168.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3596169.08fu
title: SH3596169.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3596170.08fu
title: SH3596170.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.7676336
title: Combined Mitral Valve Replacement and Ravitch Procedures in a Patient with Previous Pneumonectomy: Case Report and Review of the Literature

description: Abstract Introduction: Significant anatomical and functional changes occur following pneumonectomy. Mediastinal structures displace toward the side of the resected lung, pulmonary reserve is reduced. Owing to these changes, surgical access to heart and great vessels becomes challenging, and there is increased risk of postoperative pulmonary complications. Methods: We performed a mitral valve replacement combined with a Ravitch procedure in a young female with previous left pneumonectomy and pectus excavatum. Results: She was discharged on postoperative day 9 and remains symptom-free 3 months after surgery. Conclusion: Thorough preoperative evaluation and intensive respiratory physiotherapy are essential before performing cardiac operations on patients with previous pneumonectomy.
DOI: 10.6084/m9.figshare.7676342.v1
title: Biodiesel Synthesis: Influence of Alkaline Catalysts in Methanol-Oil Dispersion

description: Biodiesel synthesis from soybean oil using methanol and alkaline catalysts occurs in the following two consecutive steps: dispersion of methanol in the oil and methanolysis. The effect of the alkaline catalysts NaOCH3, KOCH3, NaOH, and KOH in the dispersion step at 30-60 ºC and under mechanical stirring at 400 rpm was evaluated. The dispersion step accounts for 44.6-73.3% of the total synthesis time and was poorly favored compared to methanolysis due to the increase in temperature. The catalysts decreased the dispersion time, although most of them increased the methanol-oil interfacial tension. K-containing catalysts were more active than their Na analogues due to higher adsorption of K+ in the methanol-oil interface and the higher production of methyl esters (which act as emulsifying agents), which promote a more favorable interfacial tension. The alkaline cation effect was more significant in the dispersion step than in the methanolysis step.
DOI: 10.6084/m9.figshare.7676333
title: Evaluation of nutritional status in children with amblyopia

description: ABSTRACT Purpose: We aimed to compare the body mass index and vitamin and mineral status of children with and without amblyopia. Methods: Amblyopic children aged between 5 and 18 years (n=46) and age-matched control children (n=32) were evaluated in terms of anthropometric parameters, including height, weight, body mass index and demographic features. Serum vitamin B12 and folate were measured using an Advia Centaur XP (Siemens, Ireland) biochemistry analyzer. We evaluated the inorganic mineral elements from hair samples with inductively coupled plasma-mass spectrometry using a Thermo XSeries 2 analyzer (Thermo Fisher Scientific, Bremen, Germany). Results: No significant difference was found between the two groups in terms of height, weight, and body mass index or serum B12 and folate concentrations (p&gt;0.05). Children with severe amblyopia had lower vitamin B12 and folate and higher body mass index. The levels of phosphorus (p=0.012), selenium (p=0.002), molybdenum (p&lt;0.001), iodine (p=0.002), chromium (p=0.022), boron (p&lt;0.001), and beryllium (p=0.005) were all significantly lower in the amblyopia group compared to the control group. All of these minerals, except phosphorus, were also significantly lower in those with severe amblyopia compared to those with milder amblyopia and controls (p&lt;0.05). Conclusion: Amblyopic children are significantly deficient in some inorganic elements. Inorganic elements, vitamin B12, and folate may play an important role in the visual development of amblyopic children.
DOI: 10.6084/m9.figshare.7676336.v1
title: Combined Mitral Valve Replacement and Ravitch Procedures in a Patient with Previous Pneumonectomy: Case Report and Review of the Literature

description: Abstract Introduction: Significant anatomical and functional changes occur following pneumonectomy. Mediastinal structures displace toward the side of the resected lung, pulmonary reserve is reduced. Owing to these changes, surgical access to heart and great vessels becomes challenging, and there is increased risk of postoperative pulmonary complications. Methods: We performed a mitral valve replacement combined with a Ravitch procedure in a young female with previous left pneumonectomy and pectus excavatum. Results: She was discharged on postoperative day 9 and remains symptom-free 3 months after surgery. Conclusion: Thorough preoperative evaluation and intensive respiratory physiotherapy are essential before performing cardiac operations on patients with previous pneumonectomy.
DOI: 10.6084/m9.figshare.7676351.v1
title: SODIUM BICARBONATE SUPPLEMENTATION IMPROVES PERFORMANCE IN ISOMETRIC FATIGUE PROTOCOL

description: ABSTRACT Introduction: Although sodium bicarbonate (NaHCO3) supplementation has been shown to decrease fatigue and improve high-intensity exercise performance, the effects on maintenance of isometric contractions are not clear. Objective: To investigate the effect of NaHCO3 on the performance of individuals subjected to a fatigue protocol in an isometric exercise on the isokinetic dynamometer. Methods: Participants were 12 men in a randomized, double-blind, crossover, placebo-controlled trial. Sixteen minutes after the intake of 0.3 g/kg of body mass of NaHCO3 or placebo, the participants performed an isometric fatigue protocol of right knee extension exercises during eight minutes at 70% of maximum voluntary isometric contraction. The fatigue indicator was the time point at which torque was reduced to 50% of the initial value. The length of resistance was assessed by maintaining the task over 50% of the initial torque. Lactate/blood pH concentrations and rate of perceived exertion (RPE) and pain (RPP) indexes were analyzed. The RPE of the session was evaluated 30 minutes after the test. Results: Blood pH was higher in pre-protocol and in the fatigue indicator after NaHCO3 intake, as were the blood lactate concentrations in the fatigue indicator and at the end of the protocol (p&lt;0.001). NaHCO3 supplementation increased the time to fatigue and lessened the rate of decline of isometric peak torque at the end of the protocol (p&lt;0.001). RPE and RPP were smaller at the end of the protocol in the NaHCO3 condition, and the RPE of the session was diminished (p&lt;0.001). Conclusion: NaHCO3 supplementation enhances steady isometric contraction performance and reduces the internal load. Level of Evidence II; Diagnostic studies - Investigation of an examination for diagnosis.
DOI: 10.7284/125700
title: TSG (Thermosalinograph) data collected during research cruise BH16-05 using a Sea-Bird SBE-21 instrument system onboard the platform RV Blue Heron

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7676327
title: Clinical and microbiological effects of dialyzers reuse in hemodialysis patients

description: Abstract Introduction: Chronic kidney disease (CKD) has a high prevalence and is a worldwide public health problem. Reuse of dialyzers is a cost reduction strategy used in many countries. There is controversy over its effects on clinical parameters and microbiological safety. Methods: In this clinical crossover study, 10 patients performed consecutive hemodialysis (HD) sessions divided in two phases: "single use" sessions (N = 10 HD sessions) followed by "dialyzer reuse" sessions (N = 30 HD sessions). Clinical, laboratory, and microbiological parameters were collected in the following time points: "single use", 1st, 6th, and 12th sessions with reuse of dialyzers, including bacterial cultures, endotoxins quantification in serum and dialyzer blood chamber, and detection of hemoglobin and protein residues in dialyzers. Results: Mean age of the sample was 37 ± 16 years, 6 (60%) were men, and 5 (50%) were white. CKD and HD vintage were 169 ± 108 and 47 (23-111) months, respectively. Serum C-reactive protein (CRP) [4.9 (2.1) mg/mL], ferritin (454 ± 223 ng/mL), and endotoxin levels [0.76 (0.61-0.91) EU/mL] were high at baseline. Comparison of pre- and post-HD variations of serum levels of CRP and endotoxins in the "single use" versus "reuse" phases did not result in differences (p = 0.8 and 0.4, respectively). Samples of liquid in the dialyzer inner chamber were negative for the growth of bacteria or endotoxins. There was no significant clinical manifestation within and between the phases. Conclusion: Dialyzers reuse was safe from a clinical, microbiological, and inflammatory point of view. The dialyzer performance remained adequate until the 12th reuse.
DOI: 10.6084/m9.figshare.7676330
title: Viability and control of Fusarium graminearum in barley seeds

description: ABSTRACT The aims of this study were to quantify the viability of Fusarium graminearum in barley seeds stored during the inter-harvest period and to verify the effectiveness of the chemical treatment of seeds on the fungus control and on the emerged plant population. The viability of F. graminearum was determined every 35 days, during 10 months of storage, for 50 samples of barley seeds of cultivars MN 743, MN 6021, BRS Cauê, BRS Brau and BRS Elis. Samples of 1 Kg seeds were treated with the mixture of fungicides and insecticides: 1) triadimenol + iprodione + imidacloprid; 2) (carboxin+thiram) + iprodione + carbendazim + thiamethoxam; 3) (carboxin+thiram) + difenoconazole + carbendazim + thiamethoxam; 4) difenoconazole + iprodione + carbendazim + thiamethoxam, and subsequently plated in potato dextrose agar culture medium (PDA), stored during 10 days in a growth chamber and assessed by optical microscopy. Treated seeds were sown in the field in 5.0 m X 1.0 m experimental plots arranged in completely randomized block design with four replicates. The emerged plant population was quantified at 21, 28 and 35 days after sowing on the four central lines of each experimental plot. The fungus was detected in all cultivars, showing a significant negative reduction in its viability as the storage period increased. After 10 months of storage, the mean incidence of the fungus was 2%, which can ensure inoculum for transmission. Seed treatments with the presence of the active ingredient carbendazim provided F. graminearum control superior to 90% and allowed a larger population of emerged plants.
DOI: 10.6084/m9.figshare.7676333.v1
title: Evaluation of nutritional status in children with amblyopia

description: ABSTRACT Purpose: We aimed to compare the body mass index and vitamin and mineral status of children with and without amblyopia. Methods: Amblyopic children aged between 5 and 18 years (n=46) and age-matched control children (n=32) were evaluated in terms of anthropometric parameters, including height, weight, body mass index and demographic features. Serum vitamin B12 and folate were measured using an Advia Centaur XP (Siemens, Ireland) biochemistry analyzer. We evaluated the inorganic mineral elements from hair samples with inductively coupled plasma-mass spectrometry using a Thermo XSeries 2 analyzer (Thermo Fisher Scientific, Bremen, Germany). Results: No significant difference was found between the two groups in terms of height, weight, and body mass index or serum B12 and folate concentrations (p&gt;0.05). Children with severe amblyopia had lower vitamin B12 and folate and higher body mass index. The levels of phosphorus (p=0.012), selenium (p=0.002), molybdenum (p&lt;0.001), iodine (p=0.002), chromium (p=0.022), boron (p&lt;0.001), and beryllium (p=0.005) were all significantly lower in the amblyopia group compared to the control group. All of these minerals, except phosphorus, were also significantly lower in those with severe amblyopia compared to those with milder amblyopia and controls (p&lt;0.05). Conclusion: Amblyopic children are significantly deficient in some inorganic elements. Inorganic elements, vitamin B12, and folate may play an important role in the visual development of amblyopic children.
DOI: 10.6084/m9.figshare.7676327.v1
title: Clinical and microbiological effects of dialyzers reuse in hemodialysis patients

description: Abstract Introduction: Chronic kidney disease (CKD) has a high prevalence and is a worldwide public health problem. Reuse of dialyzers is a cost reduction strategy used in many countries. There is controversy over its effects on clinical parameters and microbiological safety. Methods: In this clinical crossover study, 10 patients performed consecutive hemodialysis (HD) sessions divided in two phases: "single use" sessions (N = 10 HD sessions) followed by "dialyzer reuse" sessions (N = 30 HD sessions). Clinical, laboratory, and microbiological parameters were collected in the following time points: "single use", 1st, 6th, and 12th sessions with reuse of dialyzers, including bacterial cultures, endotoxins quantification in serum and dialyzer blood chamber, and detection of hemoglobin and protein residues in dialyzers. Results: Mean age of the sample was 37 ± 16 years, 6 (60%) were men, and 5 (50%) were white. CKD and HD vintage were 169 ± 108 and 47 (23-111) months, respectively. Serum C-reactive protein (CRP) [4.9 (2.1) mg/mL], ferritin (454 ± 223 ng/mL), and endotoxin levels [0.76 (0.61-0.91) EU/mL] were high at baseline. Comparison of pre- and post-HD variations of serum levels of CRP and endotoxins in the "single use" versus "reuse" phases did not result in differences (p = 0.8 and 0.4, respectively). Samples of liquid in the dialyzer inner chamber were negative for the growth of bacteria or endotoxins. There was no significant clinical manifestation within and between the phases. Conclusion: Dialyzers reuse was safe from a clinical, microbiological, and inflammatory point of view. The dialyzer performance remained adequate until the 12th reuse.
DOI: 10.6084/m9.figshare.7676330.v1
title: Viability and control of Fusarium graminearum in barley seeds

description: ABSTRACT The aims of this study were to quantify the viability of Fusarium graminearum in barley seeds stored during the inter-harvest period and to verify the effectiveness of the chemical treatment of seeds on the fungus control and on the emerged plant population. The viability of F. graminearum was determined every 35 days, during 10 months of storage, for 50 samples of barley seeds of cultivars MN 743, MN 6021, BRS Cauê, BRS Brau and BRS Elis. Samples of 1 Kg seeds were treated with the mixture of fungicides and insecticides: 1) triadimenol + iprodione + imidacloprid; 2) (carboxin+thiram) + iprodione + carbendazim + thiamethoxam; 3) (carboxin+thiram) + difenoconazole + carbendazim + thiamethoxam; 4) difenoconazole + iprodione + carbendazim + thiamethoxam, and subsequently plated in potato dextrose agar culture medium (PDA), stored during 10 days in a growth chamber and assessed by optical microscopy. Treated seeds were sown in the field in 5.0 m X 1.0 m experimental plots arranged in completely randomized block design with four replicates. The emerged plant population was quantified at 21, 28 and 35 days after sowing on the four central lines of each experimental plot. The fungus was detected in all cultivars, showing a significant negative reduction in its viability as the storage period increased. After 10 months of storage, the mean incidence of the fungus was 2%, which can ensure inoculum for transmission. Seed treatments with the presence of the active ingredient carbendazim provided F. graminearum control superior to 90% and allowed a larger population of emerged plants.
DOI: 10.7284/125701
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise BH16-06 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Blue Heron

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7676321
title: Peripapillary retinoschisis and serous detachment of neurosensory retina after a non-penetrating deep sclerectomy

description: Abstract Case report of a 46-year-old patient with unsatisfactory clinical controlled juvenile glaucoma and peripapillary retinoschisis who, after being submitted to non-penetrating deep sclerectomy, evolved with serous detachment of the neurosensory retina. The association between peripapillary retinoschisis and serous detachment after filtering surgery is rare and only one case has been described in the literature. The purpose of this report is, besides to emphasize the rarity of the association, to show the importance of investigating peripapillary retinoschisis in glaucomatous patients, especially if associated with retinal nerve fiber layer, and the importance of adequate explanation to patients of possible serous detachment of retina in the postoperative of filtering surgery.