cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13365233
title: Supplementary Material for: Effect of Postoperative Radiotherapy in Thymoma Patients: A SEER-Based Study

description: <b><i>Introduction:</i></b> The role of postoperative radiation therapy (PORT) for thymoma is under debate, especially in patients aged ≥60 years with an advanced stage (Masaoka stages III and IV). We aimed to evaluate the efficacy of PORT for thymoma in a population-based registry. <b><i>Methods:</i></b> A retrospective analysis of the Surveillance, Epidemiology, and End Results (SEER) database was conducted to compare the outcomes of thymoma patients with or without PORT. The primary outcomes were overall survival (OS) and cancer-specific survival (CSS). Conditional inference tree analyses were performed for risk classification according to the study variables. Cox regression was performed to evaluate the prognostic effect of PORT in the specific subgroups. <b><i>Results:</i></b> A total of 2,236 patients were included. The conditional inference tree analysis identified that an age ≥60, a Masaoka stage ≥3, and the year of diagnosis were important factors when classifying patients into prognostic subgroups. PORT was found to be a protective predictor of OS in patients aged ≥60 years, those with a Masaoka stage III—IV, and those diagnosed after 2005. Further subgroup analyses revealed that PORT was significantly associated with a better OS (HR = 0.77) in patients aged ≥60 years, whereas it was not significantly associated with CSS. <b><i>Conclusions:</i></b> An older age (≥60 years) is critical for predicting survival outcomes in thymoma patients. Moreover, patients aged ≥60 years could benefit from PORT in terms of OS.
DOI: 10.6084/m9.figshare.13365218
title: Supplementary Material for: Infantile Pyknocytosis: End-Tidal CO, %Micro-R Measurements, Next-Generation Sequencing, and Transfusion Avoidance with Darbepoetin

description: Infantile pyknocytosis is a rare, self-limited, hemolytic condition of unknown pathogenesis. It is diagnosed when a neonate with Coombs-negative hemolytic anemia has abundant pyknocytes and a characteristic clinical course after other hemolytic disorders has been excluded. Previous reports suggest that transfusions might be avoidable in this condition by administering recombinant erythropoietin. We cared for a patient with this disorder where we employed novel diagnostics and therapeutics. Despite these, and a good outcome free of transfusions, we continue to consider the condition to be idiopathic.
DOI: 10.25345/c50206
title: MassIVE MSV000086577 - Single-Lysosome Metabolomics Defines the Molecular Signature of Lysosomal Heterogeneity
title: The mass spectrum data of each lysosome was stored in a separate file and converted into mzxml format using the software ProteoWizard. Use the program XCMS to preprocess the original data, including QC, peak detection, filtering and correspondence. After processing, we got matrices with row names (m/z) and column names (sample names).
DOI: 10.6084/m9.figshare.13365260
title: Supplementary Material for: Clinical Application of 7T Magnetic Resonance Imaging in Patients with Focal Cortical Dysplasia IIa and Epilepsy

description: <b><i>Background:</i></b> Focal cortical dysplasia (FCD) is one of the most important pathogenic findings in patients with extratemporal lobe epilepsy. Magnetic resonance imaging (MRI)-negative is the most important negative factor to predict postoperative seizure freedom; however, FCD-I and part of FCD-IIa are MRI-negative on routine MRI. <b><i>Objectives:</i></b> To explore the diagnostic values of 7T MRI and its new scan sequences in epilepsy patients with FCD-IIa. <b><i>Methods:</i></b> To include patients with focal seizure and suspicious focal abnormal imaging on 3T MRI during preoperative evaluation and perform a 7T MRI scan with white matter-suppressed (WMS) and gray-white matter tissue border enhancement (GWBE) sequences, resective epilepsy surgery, and postoperative pathological finding of FCD-IIa. The preoperative qualitative and localization significance of 7T MRI and 3T MRI in lesions with FCD-IIa was compared, and then, the imaging characteristics of lesions with FCD-IIa on 7T MRI were analyzed. <b><i>Results:</i></b> Ten cases were enrolled in this study. Seven tesla MRI presented high spatial resolutions and a high signal-to-noise ratio. WMS and GWBE could selectively suppress the signal of special tissue and improved the possibility of FCD findings. FCD-IIa showed abnormal thickness of gray matter and a blurring border and was hypointense on 7T MRI compared with 3T MRI. Seven patients showed improvement in the qualitative diagnosis strength grade of FCD, and 6 subjects showed improvement in the localization strength grade of the lesion border after careful reading of the 7T MR images. Significant differences were found in the qualitative diagnosis of FCD (<i>p</i> &lt; 0.05) and localization of the lesion border (<i>p</i> &lt; 0.05) between the neuroimaging diagnoses based on 3T MRI and the findings based on 7T MRI. <b><i>Conclusion:</i></b> 7T MRI with WMS and GWBE sequences shows application value in the preoperative imaging diagnosis of lesions with FCD-IIa in epilepsy patients.
DOI: 10.5281/zenodo.4314272
title: Addressing a Trapped High-Energy Water: Design and Synthesis of Highly Potent 9H-pyrimido[4,5-b]indole-based GSK-3β inhibitors.

description: Raw concatenated trajectories of the molecular dynamics simulations related to publication: Addressing a Trapped High-Energy Water: Design and Synthesis of Highly Potent 9H-pyrimido[4,5-b]indole-based GSK-3β inhibitors. Compounds <strong><em>(S)</em>-5c</strong> and <strong><em>(S)</em>-15</strong> trajectories are provided in a single concatenated Desmond trajectory file (Both: 1 µs + 1 µs + 1 µs + 1 µs + 1 µs + 1 µs + 1 µs + 1 µs + 1 µs + 1 µs = 10 µs in total) <strong><em>(S)</em>-5c</strong> = Files named: M_CL_all-out.cms; M_CL_all_trj/ <strong><em>(S)</em>-15</strong> = Files named: M_CC_all-out.cms; M_CC_all_trj/
DOI: 10.6084/m9.figshare.13365278
title: Dataset: In-situ estimation of subsurface hydro-geomechanical properties using the groundwater response to Earth and atmospheric tides

description: This is the dataset used in a manuscript submitted to Water Resources Research.
DOI: 10.6084/m9.figshare.13365278.v1
title: Dataset: In-situ estimation of subsurface hydro-geomechanical properties using the groundwater response to Earth and atmospheric tides

description: This is the dataset used in a manuscript submitted to Water Resources Research.
DOI: 10.14284/439
title: Sampling site specific biomarker responses in Mediterranean mussels from the Adriatic Sea

description: The obtained data sets (condition index, metallothionein concentrations, the activity of acetylcholinesterase (EC 3.1.1.7), micronuclei frequency) representing biomarker responses (metallothioneins, acetylcholinesterase and micronuclei) measured during early spring and late summer in Mytilus galloprovincialis, sampled from two ecosystems between 2009 and 2012, both part of the Adriatic Sea (Gulf of Trieste and Boka Kotorska Bay). Environmental parameters (seawater temperature, salinity and dissolved oxygen) were measured at the time of mussels sampling being important parameters to interpret biomarker responses.
description: Sampling sites were selected according to previous knowledge on pollution pressures in the Gulf of Trieste (Bay of Koper (ST1), Bay of Strunjan (ST2), Bay of Piran (ST3)) and the Boka Kotorska Bay (Bay of Kotor (ST4) and Bay of Herceg Novi (ST5)). Reference sites were ST2 and ST4. Sampling time was from 2009 to 2012 in early spring (in March) and late summer (in September). The size of the collected mussels ranges from 40 to 60 mm. Metallothionein (MT) concentrations were measured in composite samples made of 50 mussels and expressed as micrograms of metallothionein per gram of tissue wet weight (µg/g wet weight). Acetylcholinesterase activity was measured in hepatopancreas or gills of individual mussels and was expressed in nmol of degraded acetylcholine per milligrams of proteins per minute (nmol/min/mg protein). Micronucleus (MN) were investigated in gills of 10 mussels pere sampling site and expressed as the frequency in promiles. Condition index (CI) was measured in twenty mussels from each sampling site and expressed in mg/cm3. Abiotic parameters of seawater (temperature, salinity and dissolved oxygen content) were measured by multiparameter probe MSS 90 (Sea & Sun Technology) at the time of mussel sampling at the depth of 2 m at all sampling sites in the Gulf of Trieste and with Handheld Multi-Parameter Instrument, Multi 350i (WTW, Xylem Brand) in the Boka Kotorska, respectively. Dataset is acknowledged to scientific collaboration between Slovenia and Montenegro in years 2010-2011, agreement BI-ME/10-11-7 and the financial support from the Slovenian Research Agency; research core funding No. P1-0237 Coastal Sea Research.
DOI: 10.6084/m9.figshare.12271292.v10
title: Arrival catalog of coronal mass ejections observed with STEREO Heliospheric Imagers (HELCATS ARRCAT 2.0)

description: ARRIVAL CATALOGUE 2.0 <br>In this ARRival CATalog (ARRCAT), the arrivals of solar coronal mass ejections that were tracked in the STEREO heliospheric imagers in the HELCATS project are calculated.<br>ARRCAT lists modeled arrivals of CMEs at various spacecraft and planets, between April 2007 - July 2020, based on the HIGeoCAT catalog of CMEs established at RAL Space, UK (R. A. Harrison, J. A. Davies, D. Barnes). <br>This is version 2.0, released 2020-05-13, updated 2020-09-14.<br>https://doi.org/10.6084/m9.figshare.12271292<br>It is based on this HIGeoCAT version: https://www.helcats-fp7.eu/catalogues/data/HCME_WP3_V06.vot using the SSEF30 model.<br>The catalog is available as python pandas dataframe (pickle), python numpy arrays (pickle, as recarray and structured array),npy (numpy, no pickle), json, csv, xlsx, txt, hdf5, html at https://helioforecast.space/arrcathttps://www.helcats-fp7.eu<br>Number of events in ARRCAT: 1581Targets: Earth_L1, STEREO-A, STEREO-B, Solar Orbiter, Parker Solar Probe (PSP), Bepi Colombo, Ulysses, Venus, Mercury, Mars.<br>For further description, see header file.<br>source code: arrcat.ipynb inhttps://github.com/cmoestl/heliocats<br>Rules: If results are produced with this catalog for peer-reviewed scientific publications,please contact christian.moestl@oeaw.ac.at for co-authorships.<br>
DOI: 10.6084/m9.figshare.12731939.v1
title: Degenerative Joint Disease (DJD) dataset

description: DJD prevalence for the appendicular joints and the spine of a Spanish population dated from the 15th to the 18th century.
DOI: 10.4228/zalf.dk.155
title: The effect of cocultivation of Fusarium, Alternaria, and Pseudomonas on the mycotoxin production and growth

description: Mycotoxigenic fungal pathogens Fusarium and Alternaria are a leading cause for loss in cereal production. During their growth in wheat-ears, they oppose bacterial antagonists such as Pseudomonas. Studies on these groups’ interactions often neglect the infection process’s temporal aspect and the associated priority effects. Here, we focus on how the first colonizer affects the subsequent ones. In a climatic chamber experiment, wheat-ears were sprayed successively with a pair of the strains A. tenuissima At625, F. graminearum Fg23, or Pseudomonas simiae Ps9. Over three weeks, microbial abundances and mycotoxin concentrations were analyzed and visualized via Self Organizing Map with Sammon Mapping (SOM-SM). All three strains revealed different characteristics and strategies to deal with co-inoculation: Fusarium, as the first colonizer, suppressed the establishment of Alternaria and Pseudomonas. Nevertheless, primary inoculation of Alternaria reduced all of the Fusarium toxins and stopped Pseudomonas from establishing. Pseudomonas showed priority effects in delaying and blocking the production of the fungal mycotoxins. The SOM-SM analysis visualized the competitive strengths: Fg23 ranked first, At625 second, Ps9 third. Our findings of species-specific priority effects in a natural environment and the role of the mycotoxins involved are relevant for developing biocontrol applications.
description: In a climate chamber experiment wheat plants were primarily inoculated with Fusarium/Alternaria or Pseudomonas, after one week an additional isolate different from the first one was applied. In the following third week, the inoculation of the second week was repeated. Before each new inoculation, a part of the previous variety was harvested. All harvested wheat-ears were dried and ground before further analysis (-&gt; qPCR and HPLC).
DOI: 10.6084/m9.figshare.12731939
title: Degenerative Joint Disease (DJD) dataset

description: DJD prevalence for the appendicular joints and the spine of a Spanish population dated from the 15th to the 18th century.
DOI: 10.6084/m9.figshare.12731939.v2
title: Degenerative Joint Disease (DJD) dataset

description: DJD prevalence for the appendicular joints and the spine of a Spanish population dated from the 15th to the 18th century.
DOI: 10.6084/m9.figshare.13341200
title: Supplementary Data for CellMixS manuscript

description: This package of data contains the CellRanger outputs and the R (SingleCellExperiment) objects for the CellMixS manuscript.<br>More details about how these datasets are exactly used/created can be found here:https://almutlue.github.io/batch_dataset/<br><br>Each ZIP file contains an XLSX file with corresponding metadata.
DOI: 10.6084/m9.figshare.13341200.v2
title: Supplementary Data for CellMixS manuscript

description: This package of data contains the CellRanger outputs and the R (SingleCellExperiment) objects for the CellMixS manuscript.<br>More details about how these datasets are exactly used/created can be found here:https://almutlue.github.io/batch_dataset/<br><br>Each ZIP file contains an XLSX file with corresponding metadata.
DOI: 10.6084/m9.figshare.13341200.v1
title: Supplementary Data for CellMixS manuscript

description: This package of data contains the CellRanger outputs and the R (SingleCellExperiment) objects for the CellMixS manuscript.<br>More details about how these datasets are exactly used/created can be found here:https://almutlue.github.io/batch_dataset/<br><br>Each ZIP file contains an XLSX file with corresponding metadata.
DOI: 10.21942/uva.13356350
title: Dialogue fingerprints

description: Dialogue fingerprints for popular dialogue datasets
DOI: 10.21942/uva.13356350.v2
title: Dialogue fingerprints

description: Dialogue fingerprints for popular dialogue datasets
DOI: 10.21942/uva.13356350.v1
title: dialogue fingerprints

description: Dialogue fingerprints for popular dialogue datasets
DOI: 10.6084/m9.figshare.13365329
title: Wang et al. —— Den characteristics and ecological significance of Marmota himalayana .xlsx

description: Den characteristics and ecological significance of Marmota himalayana on the Qinghai-Tibet Plateau
DOI: 10.5281/zenodo.4313156
title: REMIND 2.1 paper - model runs

description: output of the scenarios of the REMIND2.1 paper
DOI: 10.5281/zenodo.4313155
title: REMIND 2.1 paper - model runs

description: output of the scenarios of the REMIND2.1 paper
DOI: 10.25625/8oqmuf/o0e8qm
title: CRN.jl

description: :unav
DOI: 10.25625/8oqmuf/4ljgvy
title: plefka_2_hatTheta.png

description: :unav
DOI: 10.25625/8oqmuf/qpg05b
title: euler_step.jl

description: :unav
DOI: 10.25625/8oqmuf/dolkey
title: plefka_2.png

description: :unav
DOI: 10.25625/8oqmuf/bxlj46
title: plotting.jl

description: :unav
DOI: 10.25625/8oqmuf/z7cyez
title: plefka_2_resp.png

description: :unav
DOI: 10.25625/8oqmuf/s3olln
title: README.md

description: :unav
DOI: 10.25625/8oqmuf/vtrlg0
title: gillespie.jl

description: :unav
DOI: 10.25625/8oqmuf/kjritu
title: gillespie.png

description: :unav
DOI: 10.25625/8oqmuf/uxm2q1
title: plefka_1.png

description: :unav
DOI: 10.25625/8oqmuf/neiezi
title: print_fields.jl

description: :unav
DOI: 10.25625/8oqmuf/yipn0u
title: master_op.jl

description: :unav
DOI: 10.25625/8oqmuf/wv1oyj
title: utilities.jl

description: :unav
DOI: 10.25625/8oqmuf/z3ubxe
title: Project.toml

description: :unav
DOI: 10.25625/8oqmuf/gtoaol
title: Manifest.toml

description: :unav
DOI: 10.25625/8oqmuf/mfy7cg
title: ode_solver.jl

description: :unav
DOI: 10.25625/8oqmuf/zpdsmf
title: c_mn.jl

description: :unav
DOI: 10.25625/8oqmuf/yk54mv
title: ABC_Numerics.ipynb

description: :unav
DOI: 10.25625/8oqmuf/gt4p8n
title: LICENSE.txt

description: :unav
DOI: 10.25625/8oqmuf
title: Julia Framework for Chemical Reaction Networks (CRN)

description: Julia framework for chemical reaction networks used in my Master's thesis
DOI: 10.5281/zenodo.4316621
title: Soil water retention and water flow simulation data

description: The data is for the manuscript of a paper entitled "<strong>Simulation of water flow and calculation of </strong><strong>the related physical quality indices as influenced by soil water retention curve fitting methods".</strong> Accurate fitting of soil water retention curve (SWRC) parameters is crucial in the modeling of soil water flow and the assessment of soil quality. The un-weighted least squares regression (ULS) is the most common approach applied for fitting the SWRC functions to the observed data-points in order to optimize their parameters. However, the variance of SWRC data varies in different water contents; therefore, unlike the wet-end of the SWRC, the ULS method may not be sufficiently effective in estimating its dry-end. This study examined the differences between parameter approximations achieved by the ULS and the weighted least-squares (WLS) in the SWRC. Then, an analysis of both approaches in the simulation of water redistribution and the related soil physical quality indicators (SPQIs) was done. Accordingly
DOI: 10.5281/zenodo.4316620
title: Soil water retention and water flow simulation data

description: The data is for the manuscript of a paper entitled "<strong>Simulation of water flow and calculation of </strong><strong>the related physical quality indices as influenced by soil water retention curve fitting methods".</strong> Accurate fitting of soil water retention curve (SWRC) parameters is crucial in the modeling of soil water flow and the assessment of soil quality. The un-weighted least squares regression (ULS) is the most common approach applied for fitting the SWRC functions to the observed data-points in order to optimize their parameters. However, the variance of SWRC data varies in different water contents; therefore, unlike the wet-end of the SWRC, the ULS method may not be sufficiently effective in estimating its dry-end. This study examined the differences between parameter approximations achieved by the ULS and the weighted least-squares (WLS) in the SWRC. Then, an analysis of both approaches in the simulation of water redistribution and the related soil physical quality indicators (SPQIs) was done. Accordingly
DOI: 10.5281/zenodo.4309168
title: TCGA BRCA cancer dataset

description: Following the same steps that we used in the previous course we downloaded the TCGA-BRCA using R and Bioconductor and in particular the TCGABiolinks package. We downloaded transcriptome profiling of gene expression quantification where the experimental strategy is (RNAseq) and the workflow type is HTSeq-FPKM-UQ and only primary solid tumor data of the affymetrix GPL86 profile and clinical data.
description: NIH Genomic Data Sharing Policy: https://gdc.cancer.gov/access-data/data-access-policies
DOI: 10.5281/zenodo.4309167
title: TCGA BRCA cancer dataset

description: Following the same steps that we used in the previous course we downloaded the TCGA-BRCA using R and Bioconductor and in particular the TCGABiolinks package. We downloaded transcriptome profiling of gene expression quantification where the experimental strategy is (RNAseq) and the workflow type is HTSeq-FPKM-UQ and only primary solid tumor data of the affymetrix GPL86 profile and clinical data.
description: NIH Genomic Data Sharing Policy: https://gdc.cancer.gov/access-data/data-access-policies
DOI: 10.5281/zenodo.1323376
title: The antipassive and its relationship to person markers

description: <strong>Supplemental Materials to '<em>The antipassive and its relationship to person markers</em>'</strong> to appear (est. 2021) in: Janic, Katarzyna & Alena Witzlack-Makarevich (eds.).<em> Antipassive. Typology, diachrony and related constructions.</em> Typological Studies in Language 130. Amsterdam: John Benjamins. This data collection is part of a larger study that includes more languages and passive markers. If you are interested in the rest of the data, please e-mail me at auderset@ucsb.edu. Comments, corrections, and suggestions are always welcome, too! There are four files: AntipassivePersonForms: a spreadsheet file with the antipassive and person markers of 44 languages AntipassivePersonMetadata: a spreadsheet file with the metadata AntipassivePersonBib: a bibtex file with all the references mentioned in the metadata sheet AntipassivePerson_README: a text file explaining the structure of the three previous files
DOI: 10.5281/zenodo.1323375
title: The antipassive and its relationship to person markers

description: <strong>Supplemental Materials to '<em>The antipassive and its relationship to person markers</em>'</strong> to appear (est. 2021) in: Janic, Katarzyna & Alena Witzlack-Makarevich (eds.).<em> Antipassive. Typology, diachrony and related constructions.</em> Typological Studies in Language 130. Amsterdam: John Benjamins. This data collection is part of a larger study that includes more languages and passive markers. If you are interested in the rest of the data, please e-mail me at auderset@ucsb.edu. Comments, corrections, and suggestions are always welcome, too! There are four files: AntipassivePersonForms: a spreadsheet file with the antipassive and person markers of 44 languages AntipassivePersonMetadata: a spreadsheet file with the metadata AntipassivePersonBib: a bibtex file with all the references mentioned in the metadata sheet AntipassivePerson_README: a text file explaining the structure of the three previous files
DOI: 10.6084/m9.figshare.13365350.v1
title: data 1.docx

description: <br>Pleural Effusion Volume in Patients with Acute Pancreatitis: A Retrospective Study from Three Acute Pancreatitis Centers<b></b><br>
DOI: 10.6084/m9.figshare.13365350
title: data 1.docx

description: <br>Pleural Effusion Volume in Patients with Acute Pancreatitis: A Retrospective Study from Three Acute Pancreatitis Centers<b></b><br>
DOI: 10.5281/zenodo.4316610
title: Simultaneous observations of EIP, TGF, Elve and optical lightning.

description: Data used for the paper: Simultaneous observations of EIP, TGF, Elve and optical lightning. Østgaard et al.
DOI: 10.5281/zenodo.4316609
title: Simultaneous observations of EIP, TGF, Elve and optical lightning.

description: Data used for the paper: Simultaneous observations of EIP, TGF, Elve and optical lightning. Østgaard et al.