cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.2566421
title: Complete Rxivist dataset of scraped bioRxiv data

description: rxivist.org allows readers to sort and filter the tens of thousands of preprints posted to bioRxiv. Rxivist uses a custom web crawler to index all papers on biorxiv.org; this is a snapshot of Rxivist the production database. The version number indicates the date on which the snapshot was taken. See the included "README.md" file for instructions on how to use the "rxivist.backup" file to import data into a PostgreSQL database server.

Please note this is a different repository than the one used for the Rxivist manuscript—that is in a separate Zenodo repository. You're welcome (and encouraged!) to use this data in your research, but <strong>please cite our paper, available on bioRxiv.</strong>

Going forward, this information will also be available pre-loaded into Docker images, available at blekhmanlab/rxivist_data.

<strong>Version notes:</strong>


	<strong>2019-03-21</strong>

	
		The license for this dataset has been changed to CC-BY, which allows use for any purpose and requires only attribution.
		A new table, "publication_dates," has been added and will be continually updated. This table will include an entry for each preprint that has been published externally for which we can determine a date of publication, based on data from Crossref. (This table was previously included in the "paper" schema but was not updated after early December 2018.)
		Foreign key constraints have been added to almost every table in the database. This should not impact any read behavior, but anyone writing to these tables will encounter constraints on existing fields that refer to other tables. Most frequently, this means the "article" field in a table will need to refer to an ID that actually exists in the "articles" table.
		The "author_translations" table has been removed. This was used to redirect incoming requests for outdated author profile pages and was likely not of any functional use to others.
		The "README.md" file has been renamed "1README.md" because Zenodo only displays a preview for the file that appears first in the list alphabetically.
		The "article_ranks" and "article_ranks_working" tables have been removed as well; they were unused.
	
	
	<strong>2019-02-13.1</strong>
	
		After consultation with bioRxiv, the "fulltext" table will not be included in further snapshots until (and if) concerns about licensing and copyright can be resolved.
		The "docker-compose.yml" file was added, with corresponding instructions in the README to streamline deployment of a local copy of this database.
	
	
	<strong>2019-02-13</strong>
	
		The redundant "paper" schema has been removed.
		BioRxiv has begun making the full text of preprints available online. Beginning with this version, a new table ("fulltext") is available that contains the text of preprints that have been processed already. <strong>The format in which this information is stored may change in the future</strong>; any digression will be noted here.
		This is the first version that has a corresponding Docker image.
DOI: 10.5523/bris.3vj9nmc9bekm62pvlyi452jlv2
title: Hard Evidence Process Evaluation

description: The Hard Evidence study aimed to explore the impact, acceptability, and safety of a co-developed play in disseminating research on domestic abuse. We conducted a mixed-methods study with the play team and audience: 20 quantitative and 56 qualitative survey responses from audience members, 4.25 hours of direct observations of play performances, qualitative interviews with 7 audience members and 8 play team members. This dataset contains: anonymised transcripts of qualitative semi-structured interviews, demographic characteristics of interviewees, quantitative survey responses, observation notes. Study documentation contains: protocol, participant information sheet, interview topic guides, survey questionnaire.
DOI: 10.6084/m9.figshare.26997664
title: <b>Associations of Phthalate Exposure with Adiposity and Metabolic Syndrome in US Adolescents and Adults, NHANES 2013-2018 </b>Supplemental Material.docx

description: Supplementary tables for the manuscript entitled, "Associations of Phthalate Exposure with Adiposity and Metabolic Syndrome in US Adolescents and Adults, NHANES 2013-2018."
DOI: 10.6084/m9.figshare.27188796.v5
title: <b>Understanding decision making for use of Atraumatic Restorative Approach based on non-clinical factors by Indian Pedodontists - A conjoint analysis</b>

description: Dentist’s clinical decision-making regarding restorative interventions for the treatment of caries exhibits significant variability. Conjoint analysis an Indirect (decompositional) statistical method, deconstructs the task into a series of choices or ratings. Collectively, these choices or ratings, enable the computation of the relative importance of each studied attribute. Studies examining dentists use of specific techniques and the various factors influencing their clinical decision are relatively rare. This study evaluated Pedodontists perception of non-clinical factors, such as child’s age, level of cooperation, and vulnerability status, and their influence on decisions to perform Atraumatic Restorative Treatment (ART) approach using hypothetical patient scenarios and a conjoint design. The advantage of the conjoint design is its ability to more accurately measure psychological, real or any hidden factors in professional behaviour (decision making). The web-based survey questionnaire with the help of Google forms was administered to all the pedodontists registered as life members. Ethical approval was obtained from the Institutional Review Board (BDC/383/2017-18). Informed consent was obtained from the participant through the consent form enclosed in questionnaire.
DOI: 10.6084/m9.figshare.27222561
title: Supplementary Material for: Impact of concomitant prescriptions and lifestyle factors on the initial course of newly diagnosed inflammatory bowel disease

description: Introduction: There is a close relationship between the relapse of inflammatory bowel disease (IBD) and lifestyle factors, including concomitant medications such as non-steroidal anti-inflammatory drugs (NSAIDs), antithrombotic drugs, smoking status, and alcohol consumption. However, solid evidence is limited regarding the risk factors at diagnosis and initial disease course. This study aimed to explore the impact of concomitant prescriptions and lifestyle factors in patients with newly diagnosed IBD using a large-scale real-world database.
Methods: This is a retrospective inception cohort study using the insurance claims database. Newly diagnosed patients with UC and CD were enrolled between January 2005 and May 2020. Concomitant prescriptions and lifestyle factors were assessed for new biologics use, surgery, and hospitalization during the first year. 
Results: In total, 6,743 patients with UC and 1,000 patients with CD were enrolled. Proton pump inhibitors, antithrombotics, antibiotics, and NSAIDs were identified as associated factors for both biologics use and hospitalization in UC patients (all p&lt;0.01), and antithrombotics were identified as associated factors for both biologics use and hospitalization in CD patients (all p&lt;0.01) in multivariable analyses. Interestingly, smoking was protective against hospitalization in UC patients (p&lt;0.01), but not in CD patients (p=0.997), analyzed by univariate analysis. Alcohol consumption was protective against hospitalization outcomes in UC patients (p=0.02) but not in CD patients (p=0.27), analyzed by univariate analysis.
Conclusion: Immediate attention should be paid to concomitant medications at diagnosis, because they may have impact on the initial course of IBD.
DOI: 10.6084/m9.figshare.27861573
title: Supplementary Material for: Exploring the Landscape of Perioperative Immediate Hypersensitivity: A Comprehensive 6-Year Monocentric Observational Analysis on Epidemiology and Risk Factors

description: Introduction: Perioperative immediate hypersensitivity (POH) is a rare complication estimated at 1/10,000 anaesthesia. The objective of our study was to investigate the risk factors of POH over a six-year period in a French teaching hospital.
Materials and methods: Single-center retrospective descriptive epidemiological study of patients treated in the operating room from January 2016 to December 2021 with and without POH.
Results: 111 POH were identified out of 47,585 surgeries, mainly women (71%) with a history of asthma (16% vs 6%, p&lt;0.001) undergoing plastic surgery (49% vs 32%, p&lt;0.001). POH patients were more likely to receive neuromuscular blocking agents and antibiotics (respectively 88% vs 59%, p&lt;0.001 and 59% vs 24%, p&lt;0.001). 92% of patients underwent intraoperative sampling, only 31% benefited from an allergy consultation. 14% had positive skin test (ST). The culprit agent were neuromuscular blocking agents (47% of which 57% rocuronium, 29% suxamethonium, and 14% atracurium), antibiotics (33%, of which 80% cefazolin and 20% cefoxitin) and gelatin (7%).
Conclusion: Our study reported a POH incidence of 23/10,000 anaesthesia, with identified allergens aligning with existing literature. These findings underscore the critical need for enhanced patient follow-up to monitor potential hypersensitivity and mitigate future risks.
DOI: 10.6084/m9.figshare.27867984
title: Supplementary Material for: Global, regional, and national prevalence and disability-adjusted life-years for female infertility: Results from a global burden of disease study, 1990–2019

description: Introduction: Female infertility has a devastating impact on the physical and mental health of individuals and national fertility. However, most of the previous studies on this subject were conducted on rather small sample sizes and have certain limitations. Therefore, we aimed to determine the prevalence of female infertility in 204 countries and territories from 1990 to 2019. 
Methods: We examined female infertility in terms of prevalence, age-standardized prevalence rates (ASR), and disability-adjusted life-years (DALYs) across different age groups in 204 countries and territories from 1990 to 2019 using data from the Global Health Data Exchange query tool.
Results: From 1990 to 2019, ASR and DALYs for female infertility increased globally. At the socio-demographic index (SDI) quintile level, middle-SDI and high-middle-SDI countries exhibited a faster increase in the ASR of female infertility. In 2019, with the highest female infertility rate recorded among those between the ages of 30–34 years and the lowest among those between the ages of 45–49 years. In 2019, high-income North America recorded the highest proportion of primary infertility, while East Asia recorded the lowest proportion. 
Limitations: First, the GBD database lacks data for some countries and regions. Second, data access and quality differ across locations. Third, the causes of infertility are not comprehensive, data on Klinefelter in GBD2019 in relation to primary infertility was 0. 
Conclusion: Globally, the prevalence of DALYs and age-standardized female infertility increased from 1990 to 2019.
DOI: 10.17188/1194375
title: Materials Data on Sr2V2O7 by Materials Project

description: Sr2V2O7 crystallizes in the triclinic P-1 space group. The structure is three-dimensional. there are four inequivalent Sr2+ sites. In the first Sr2+ site, Sr2+ is bonded in a 8-coordinate geometry to eight O2- atoms. There are a spread of Sr–O bond distances ranging from 2.55–2.98 Å. In the second Sr2+ site, Sr2+ is bonded in a 9-coordinate geometry to nine O2- atoms. There are a spread of Sr–O bond distances ranging from 2.55–3.01 Å. In the third Sr2+ site, Sr2+ is bonded in a 6-coordinate geometry to eight O2- atoms. There are a spread of Sr–O bond distances ranging from 2.56–3.04 Å. In the fourth Sr2+ site, Sr2+ is bonded in a 8-coordinate geometry to eight O2- atoms. There are a spread of Sr–O bond distances ranging from 2.50–2.97 Å. There are four inequivalent V5+ sites. In the first V5+ site, V5+ is bonded to four O2- atoms to form corner-sharing VO4 tetrahedra. There are a spread of V–O bond distances ranging from 1.70–1.84 Å. In the second V5+ site, V5+ is bonded to four O2- atoms to form corner-sharing VO4 tetrahedra. There are a spread of V–O bond distances ranging from 1.69–1.85 Å. In the third V5+ site, V5+ is bonded to four O2- atoms to form corner-sharing VO4 tetrahedra. There are a spread of V–O bond distances ranging from 1.70–1.84 Å. In the fourth V5+ site, V5+ is bonded to four O2- atoms to form corner-sharing VO4 tetrahedra. There are a spread of V–O bond distances ranging from 1.71–1.83 Å. There are fourteen inequivalent O2- sites. In the first O2- site, O2- is bonded in a 3-coordinate geometry to two Sr2+ and one V5+ atom. In the second O2- site, O2- is bonded in a distorted single-bond geometry to three Sr2+ and one V5+ atom. In the third O2- site, O2- is bonded in a 2-coordinate geometry to one Sr2+ and two V5+ atoms. In the fourth O2- site, O2- is bonded in a distorted single-bond geometry to three Sr2+ and one V5+ atom. In the fifth O2- site, O2- is bonded in a 1-coordinate geometry to three Sr2+ and one V5+ atom. In the sixth O2- site, O2- is bonded in a 1-coordinate geometry to three Sr2+ and one V5+ atom. In the seventh O2- site, O2- is bonded in a distorted single-bond geometry to three Sr2+ and one V5+ atom. In the eighth O2- site, O2- is bonded in a distorted single-bond geometry to one Sr2+ and one V5+ atom. In the ninth O2- site, O2- is bonded in a 1-coordinate geometry to two Sr2+ and one V5+ atom. In the tenth O2- site, O2- is bonded in a 1-coordinate geometry to three Sr2+ and one V5+ atom. In the eleventh O2- site, O2- is bonded in a distorted bent 120 degrees geometry to one Sr2+ and two V5+ atoms. In the twelfth O2- site, O2- is bonded to three Sr2+ and one V5+ atom to form distorted edge-sharing OSr3V tetrahedra. In the thirteenth O2- site, O2- is bonded in a distorted trigonal planar geometry to two Sr2+ and one V5+ atom. In the fourteenth O2- site, O2- is bonded in a 1-coordinate geometry to three Sr2+ and one V5+ atom.
DOI: 10.18739/a27m04114
title: Continuous aerosol analysis of the deeper (&gt;214 m) archived Eclipse ice core

description: A continuous ice core analytical system was used to measure a range of elements and chemical species in the deeper section (&gt;214 m) of the archived Eclipse ice core
DOI: 10.35097/xqlocxhprfslzyqh
title: Anomalous Nernst effect in the noncollinear antiferromagnet Mn5Si3

description: Data of the magnetization, anomalous Hall effect, and anomalous Nernst effect measured on a Mn5Si3 single crystal.
DOI: 10.6084/m9.figshare.27861045
title: Supplementary Material for: Age-Related Hearing Loss: A cross-sectional study of healthy older Australians

description: Abstract
Introduction
Hearing loss is common in ageing populations, but thorough investigation of factors associated with objective hearing loss in otherwise healthy, community dwelling older individuals is rare. We examined prevalence of age-related hearing loss (ARHL) in healthy, community-dwelling older adults, and determined whether sociodemographic, lifestyle or health factors associate with hearing thresholds. Audiometry assessment was investigated with self-reports of hearing loss and hearing handicap.

Methods
Australian participants (n=1260) of median age 73 years (IQR 71-76) joined ASPREE-Hearing, a sub-study of the ASPREE (ASPirin in Reducing Events in the Elderly) trial with exclusions including cognitive impairment, cardiovascular disease (CVD), independence-limiting physical disability, and uncontrolled hypertension. ASPREE collected demographics, anthropometrics, lifestyle, and health data. Audiometry measured better ear pure-tone-average (PTA) across four frequencies (0.5-4kHz) to establish hearing thresholds, categorised as normal or mild, moderate and severe hearing loss. Questionnaires collected perceived hearing problems and noise exposure. 

Results
ARHL prevalence by audiometry was 49.7%, affecting men (59%) more than women (41%). A majority (54.5%) self-reported some hearing problems which mostly aligned with objective assessments; 45.6% self-reported a “little trouble” with hearing, while 35% had objective mild hearing loss; (8.3%) reported having a “lot of trouble” hearing while 13% had moderate hearing loss; and (0.6%) reported being “deaf” with 2% demonstrated severe hearing loss. There was a significant association (p&lt;0.001) between self-reported hearing handicap and audiometric measures of hearing loss. In multivariate analysis of health, demographics and lifestyle risk factors only age, gender (men), and education years (&lt;12) remained associated (P&lt;0.05) with hearing loss. Hearing thresholds were not associated with smoking, living situation, alcohol use, hypertension, diabetes, or chronic kidney disease. 

Conclusion 
ARHL robustly assessed by audiometry is common among healthy older Australians with men more likely to have abnormal hearing thresholds than women. Hearing loss was associated with fewer years of formal education, but not with a range of chronic conditions or alcohol use. Self-reported hearing loss correlates well with higher PTA hearing threshold levels in this healthy cohort where prevalence was lower than previously reported for the age group &gt;70 years. Hearing health education remains an important public health tool for this age. Targeting hearing in older patient health checks could be beneficial to mitigate the cognitive, social, and mental health consequences of ARHL, even if patients do not report a problem or handicap.
DOI: 10.18739/a23t9d689
title: Ice core aerosol measurements in the Humboldt Ice Core

description: A continuous ice core analytical system was used to measure a range of elements and chemical species in the archived Humboldt ice core.
DOI: 10.18739/a2057cs7s
title: Ice core aerosol measurements in the Tunu-N ice core

description: A continuous ice core analytical system was used to measure a range of elements and chemical species in the archived Tunu ice core
DOI: 10.18739/a2vd6p539
title: Collaborative Research: A winter expedition to explore the biological and physical conditions of the Bering, Chukchi, and Southern Beaufort Seas

description: This award is funded under the American Recovery and Reinvestment Act of 2009 (Public Law 111-5). Funds are provided to collect baseline winter information on the overwintering physical and biological characteristics of three important Arctic Seas: The Bering Sea, the Chukchi Sea, and the Beaufort Sea. Understanding of seasonality, and particularly winter conditions, in the Arctic is severely limited because of difficulties in accessing these regions during winter and because of limitations to sensor technology that can be deployed on overwintering moorings and ice-tethered profilers/buoys. In particular, understanding of the overwintering strategies of one of the dominant copepod genera, Calanus spp., is not well understood but is critical to ecosystem modeling efforts. This lack of knowledge has compromised our ability to model and to predict Arctic ecosystems, knowledge that is critical to our efforts to understand the potential impacts of ongoing climate change. A 6-week cruise to the Bering, Chukchi, and Beaufort Seas was conducted during November and December 2011 during which physical (hydrography, circulation), chemical (nutrients), and biological (zooplankton, microzooplankton, chlorophyll) sampling was done to describe the hydrography, circulation and aspects of the planktonic and nutrient environments, identify the overwintering habitat of Calanus spp., determine the condition and activity of Calanus spp. and euphausiids, describe the interconnectedness between species/populations of Calanus and euphausiids in these regions, identify the transformations of Pacific Water on the Chukchi Shelf, describe off-shelf flow of Pacific Water into the Arctic Ocean and the circulation and hydrography of Barrow Canyon, and quantify the course- and fine-scale vertical distributions of plankton and particles in relation to the vertical structure of the water column.
DOI: 10.18739/a2kw57j68
title: HLY1104 Winter Cruise Zooplankton Genetics

description: The files contain mitochondrial gene sequence data for individual zooplankton collected in the Bearing, Beaufort, and Chukchi seas during early winter, November December, 2011 on the USCGC Healy (HLY1104). The files are Fasta files that can be opened in most bioinformatics software programs (e.g. Geneious, MegAlign, MEGA) or text/word processing programs. For each sequence, the file contains the cruise number, isolate number, and station number followed by the mt COI genetic sequence. A separate readme file contains the station information
DOI: 10.5281/zenodo.14202639
title: ADFGNmat
DOI: 10.5281/zenodo.14202640
title: ADFGNmat
DOI: 10.18739/a2qn5zc0n
title: HLY1104 Winter Cruise Zooplankton Morphometrics

description: Zooplankton size data collected during the USCGC Healy cruise to the Chukchi, Beaufort, and Bering Seas in Nov. - Dec. 2011. See Readme file for methods.
DOI: 10.18739/a2g44hr1z
title: UpTempO Buoys Deployed in 2011

description: Each file in this dataset contains data pertaining to one UpTempO buoy deployed in the Arctic Ocean in August and September of 2011. Data values for each buoy include paired values of nominal depth (m) and temperature down to 25 or 60m, pressure at one or two nominal depths, and sea level pressure.
DOI: 10.18739/a2bc3sx6q
title: UpTempO Buoys Deployed in 2010

description: Each file in this dataset contains data pertaining to one UpTempO buoy deployed in the Arctic Ocean in July and August of 2010. Data values for each buoy include paired values of nominal depth (m) and temperature down to 60m, pressure at two nominal depths, and sea level pressure.
DOI: 10.18739/a26m3343v
title: Collaborative Research: Development of an Ice-Tethered Winch for the Seasonal Ice Zone

description: To help fill the data gap that exists in oceanic observations over the Arctic shelf, we have developed a new autonomous profiler, the Ice-Tethered Winch (ITW). The ice-tethered winch (ITW) combines the design of two established technologies, the Ice-Tethered Profiler (ITP) and Arctic Winch. Merging these technologies allows for expansion upon their individual capabilities by creating a new instrument that can both telemeter subsurface data from beneath the ice and profile the water column over variable depths. The ITW provides relatively high resolution (four profiles daily with sub-meter vertical resolution) time series of water-column physical and optical properties, including temperature, salinity, pressure, turbidity, and chlorophyll. The ITW can transition between an Eulerian platform when tethered to landfast ice and a semi-Lagrangian drifter when in open water. More information about the project and full data records can be found through the ITW and ITP websites, respectively (see related links).