cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.18739/a2pc2t86b
title: Ocean profile of temperature and salinity below the ice shelf of Petermann Gletscher, Greenland, 2015

description: Ocean waters penetrate below the floating ice shelf of Petermann Gletscher about 50 kilometers from its terminus towards the grounding zone of the glacier. Hot-water drilling from the surface of the glacier provided access to the ocean below it. In August of 2015 three such access holes were drilled by the British Antarctic Survey about 3 kilometers, 16 kilometers, and 26 kilometers from the grounding zone near the center of the floating glacier. The files here contain 5 profiles in its raw and native resolution of 16 Hertz during both down- and up-cast to allow for careful investigation of both the interface between glacier and ocean and fine-structure within the ocean. A subset of the data were used and explained as Washam et al. (2019) in the Journal of Glaciology. Sediment cores were recovered at the same location and times.
DOI: 10.18739/a2t14tp7r
title: Currents under land fast sea ice from tilt sensor moorings in Wolstenholme Fjord, Greenland, 2017

description: The principal investigators of this project propose to design and develop an integrated underwater acoustic sensor network for ice-covered seas. The sensor and communication network will support 1) long-term, intelligent distributed Arctic observing systems, 2) assimilation of remote-sensing and in-situ under-ice measurements, and 3) regional and global climate modeling with real-time measurements. Such a network holds the promise to revolutionize under-ice ocean sampling in polar regions. Ocean currents and temperatures in Wolstenholme Fjord adjacent to Thule Air Base (TAB) in Greenland were profiled about 0.05 meter below the sea ice at three mooring location in March and April of 2017. The fjord was covered by land-fast sea ice and thus provided a stable platform from which to test, deploy, and recover a range of oceanographic and acoustic sensor systems via snowmobiles during day-light hours when air temperatures are generally above -25 degrees Celsius. Ocean currents were estimated from the drag on a pendulum attached to the sea ice that measured accelerations and magnetic field strength vectors in the all three spatial dimensions.
DOI: 10.25550/tm4
title: microCT - Bone Tissue of an Msx1+/+ mouse at E17.5

description: Mouse ID: AH240 This dataset includes microCT scans of the skull of an Msx1+/+ mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tmr
title: microCT - Bone Tissue of Msx1 Control Mouse at E18.5

description: Mouse ID: AH244 This dataset includes 1 microCT scan of the skull of an Msx1 Control mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tqt
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm409

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr6:51122426-51123469 **Name:** mCF95 **Vista Enhancer ID:** mm409 **Nearest craniofacial gene or locus:** none **Enhancer expression:** negative This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF95metadata.txt from the External Reference section
DOI: 10.25550/v6e
title: microCT - Bone Tissue of Fgfr2 Control Mouse at P0

description: This dataset includes 1 microCT scan of the skull of an Fgfr2 Control mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v9p
title: Micro-CT images of adult mouse skulls, Collaborative Cross 129S1 x NZO

description: The dataset consists of a set of images for 7 mice with one parent from the 129S1 strain and the other from the NZO strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/vam
title: microCT - Soft Tissue of C57BL6J at E13.5

description: This dataset includes 1 microCT scan of the skull of a C57BL6J mouse at E13.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vk8
title: microCT - Bone Tissue of K14-Cre;Tgfbr2fl/fl mouse at P0

description: Mouse ID: JI078 This dataset includes a microCT scan of the skull of a K14-Cre;Tgfbr2fl/fl mouse at stage P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vqw
title: Micro-CT images of adult mouse skulls, Collaborative Cross 129S1 x PWK

description: The dataset consists of a set of images for 11 mice with one parent from the 129S1 strain, and the other from the PWK strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/vrc
title: Gene expression microarray - mouse E8.5 Single-Cell Neural Crest

description: Gene expression microarray using tissue obtained by laser capture microdissection (LCM) from the Single-Cell Neural Crest of mouse embryos at E8.5.
DOI: 10.7910/dvn/d141fu/5z7nso
title: ID1_CMV_pp65.tab

description: :unav
DOI: 10.7910/dvn/d141fu/8cxxyd
title: ID3_Costim.tab

description: :unav
DOI: 10.7910/dvn/d141fu/cikk28
title: ID2_Costim.tab

description: :unav
DOI: 10.7910/dvn/d141fu/llcand
title: ID2_CMV_pp65.tab

description: :unav
DOI: 10.7910/dvn/d141fu/wlevco
title: ID1_Costim.tab

description: :unav
DOI: 10.25550/tme
title: microCT - Bone Tissue of C57BL6J at P0

description: This dataset includes 1 microCT scan of the skull of a C57BL6J mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tnr
title: microCT - Bone Tissue of a Wnt1-Cre; Tgfbr2fl/fl; Alk5fl/+ mouse at E16.5

description: Mouse ID: JI330 This dataset includes microCT scans of the skull of a K14-Cre; Fgfr2fl/flmouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/trm
title: Transgenic Human Enhancer Assay - Vista Enhancer ID: hs1256

description: See link to the data preparation protocols for this study in the Additional Information section **Enhancer location:** Human genome hg19, chr5: 174160174-174161818 **Name:** CF6 **Vista Enhancer ID:** hs1256 **Nearest craniofacial gene or locus:** Msx2 **Enhancer expression:** positive **Tissues where active:** nose, hindbrain, forebrain, limb **Comment on OPT files:** no 3D movie available This data set includes the following: * 4 movie (.mov, .m1v) files: A CLIP file that provides an overview of the 3-D model generated by Optical Projection Tomography (OPT)Thresholding-based false-color representation shows unstained regions of the embryo in green, LacZ signal in red. In addition, 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane.
DOI: 10.25550/v18
title: microCT - Bone Tissue of Myf5-Cre; Smad4fl/fl mouse at P0

description: Mouse ID: DH113 This dataset includes microCT scans of the skull of a Myf5-Cre; Smad4fl/fl mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v1a
title: microCT - Bone Tissue of a Wnt1-Cre;Tgfbr2fl/fl mouse at E17.5

description: Mouse ID: AS325 This dataset includes microCT scans of the skull of a Wnt1-Cre;Tgfbr2fl/fl mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vc0
title: Micro-CT images of adult mouse skulls, Collaborative Cross NOD x PWK

description: The dataset consists of a set of images for 19 mice with one parent from the NOD strain, and the other parent from the PWK strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/vda
title: microCT - Soft Tissue of a Myf5-Cre;Smad4fl/fl at P0

description: Mouse ID: JF267 This dataset includes microCT scans of the skull of a Myf5-Cre;Smad4fl/fl at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vq2
title: Gene expression RNA-Seq - mouse E14.5 Wild Type Anterior Nasal Palate

description: This data set contains FASTQ RNA-Seq data for the Anterior Nasal region of the palatal shelves at the E14.5 time-point in the developing mouse. Wild-type CD-1 outbred mice were used in this experiment. For each different region: Anterior Medial Palate - From the anterior region of the palatal shelf (closer to the front of the face). Also closer to the center of the palatal shelves (closer to the Medial-Edge Epithelia). Posterior Medial Palate - From the posterior region of the palatal shelf (closer to the hind-brain). Also located closer to the center of the palatal shelves (closer to the MEE). Anterior Lateral Palate - From the anterior region of the palatal shelf (closer to the front of the face). The lateral region located further from the MEE. Posterior Lateral Palate - From the posterior region of the palatal shelf (closer to the hind-brain). The lateral region located further from the MEE. Anterior Nasal Palate - From the anterior region of the palatal shelf (closer to the front of the face). The nasal half of the palate located closer to the nose. Posterior Nasal Palate - From the posterior region of the palatal shelf (closer to the hind-brain). The nasal half of the palate located closer to the nose. Anterior Oral Palate - From the anterior region of the palatal shelf (closer to the front of the face). The oral half of the palate located closer to the tongue. Posterior Oral Palate - From the posterior region of the palatal shelf (closer to the hind-brain). The oral half of the palate located closer to the tongue. There are 3 replicates for each region collected (four for the ant. nasal region). Regions were isolated using Laser Capture Microdissection with the Arcturus Veritas instrument, then RNA-purified and processed for RNA Seq. The RNA-Seq was performed using 50 bp single-end reads (at least 20 million reads). Sequencing was performed on the Illumina HiSeq 2500.
DOI: 10.25550/vq8
title: Wnt1 GFP Twist1 BF Pax2 DAPI HCR Right Side Stitched (with errors)

description: HCR images of a mouse at E9.5 - Right Stitched (with errors)
DOI: 10.25550/vty
title: Gene expression microarray - mouse E10.5 Maxillary Columnar Epithelium

description: Gene expression microarray using tissue obtained by laser capture microdissection (LCM) from the Maxillary Columnar Epithelium of mouse embryos at E10.5
DOI: 10.7910/dvn/d141fu/jcmn3f
title: ID3_CMV_pp65.tab

description: :unav
DOI: 10.7910/dvn/d141fu/kipr30
title: ID4_Costim.tab

description: :unav
DOI: 10.7910/dvn/d141fu/yzsu1p
title: ID5_CMV_pp65.tab

description: :unav
DOI: 10.7910/dvn/d141fu/zwns66
title: ID4_CMV_pp65.tab

description: :unav
DOI: 10.25550/tje
title: Gene expression microarray - mouse E8.5 Floor Plate Neural Epithelium

description: Gene expression microarray using tissue obtained by laser capture microdissection (LCM) from the Floor Plate Neural Epithelium of mouse embryos at E8.5.
DOI: 10.25550/tpm
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm390

description: See link to the data preparation protocols for this study in the Additional Information section . See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr5:20455843-20456804 **Name:** mCF76 **Vista Enhancer ID:** mm390 **Nearest craniofacial gene or locus:** none **Enhancer expression:** negative This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF76metadata.txt from the External Reference section
DOI: 10.25550/tsg
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm402

description: See link to the data preparation protocols for this study in the Additional Information section . The results are also presented as tracks on the Genome Browser (see links in the Additional Information section) **Enhancer location:** Mouse genome mm9, chr6:50771120-50773588 **Name:** mCF88 **Vista Enhancer ID:** mm402 **Nearest craniofacial gene or locus:** none **Enhancer expression:** positive **Tissues where active:** branchial arch, forebrain, hindbrain, midbrain, neural tube, other This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF88metadata.txt from the External Reference section
DOI: 10.25550/ty2
title: Micro-CT images of adult mouse skulls, Collaborative Cross C57BL6 x C57BL6

description: The dataset consists of a set of images for 1 mouse with both parents from the C57BL6 strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/tym
title: p300 ChIP-seq experiment on mouse embryonic craniofacial tissue at e11.5

description: p300 ChIP-seq experiment on mouse embryonic craniofacial tissue (e11.5)
DOI: 10.25550/vfg
title: microCT - Soft Tissue of a Ctgf+/+ Control mouse at E14.5

description: Mouse ID: CP308 This dataset includes microCT scans of the skull of a Ctgf+/+ Control mouse at E14.5 . The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vsw
title: microCT - Soft Tissue of ctgf-/- mouse at P0

description: Mouse ID: CP061 This dataset includes microCT scans of the skull of a ctgf-/- mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tvp
title: microCT - Bone Tissue of K14-Cre;Tgfbr2flfl mouse at P0

description: Mouse ID: JI210 This dataset includes 1 microCT scan of the skull of a K14-Cre; Tbfbr2fl/fl mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v36
title: microCT - Soft Tissue of a K14-Cre;Tgfbr2fl/fl mouse at E14.5

description: Mouse ID: JI299 This dataset includes microCT scans of the skull of a K14-Cre;Tgfbr2fl/fl mouse at E14.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vct
title: microCT - Skull of K14-Cre;Tgfbr2fl/fl mouse at E18.5

description: This dataset includes a microCT scan of the skull of a K14-Cre;Tgfbr2fl/fl mouse at stage E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vgc
title: Micro-CT images of adult mouse skulls, Collaborative Cross NOD x 129S1

description: The dataset consists of a set of images for 20 mice with one parent from the NOD strain, and the other from the 129S1 strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/vm2
title: microMRI images of skulls of Myf5Cre * Smad4fl/fl mice at E18.5

description: microMRI images of skulls of Myf5Cre * Smad4fl/fl mice at E18.5. The dataset contains 3-D images in niftii format for 1 mouse.
DOI: 10.25550/vmc
title: Micro-CT images of adult mouse skulls, Collaborative Cross C57BL6 x AJ

description: The dataset consists of a set of images for 20 mice with one parent from the C57BL/6 strain and the other from the A/J strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/vta
title: Skull vault formation in individual WT AB Fish

description: An individual fish was imaged successively from 12-37 dpf by confocal microscopy, during the period of induction and growth of the frontal and parietal bones. The fish was transgenic for col1a1a:gfp, marking chondrocytes, and for sp7:mcherry, marking osteoblasts.
DOI: 10.25550/vxe
title: Transgenic Mouse Enhancer OPT Assays - mm1166

description: ChIP-seq, RNA-seq and transgenic assays to identify non-coding regulatory elements (enhancers) active during craniofacial development
DOI: 10.25550/trp
title: microCT - Soft Tissue of a Msx1+/+ Control mouse at E16.5

description: Mouse ID: AH256 This dataset includes microCT scans of the skull of a Msx1+/+ Control mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tst
title: Micro-CT images of adult mouse skulls, Collaborative Cross C57BL6 x NOD

description: The dataset consists of a set of images for 17 mice with one parent from the C57BL6 strain and the other from the NOD strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/tsy
title: microCT - Soft Tissue of a K14-Cre;Fgfr2fl/fl mouse at P0

description: Mouse ID: ZZ236 This dataset includes microCT scans of the skull of a K14-Cre;Fgfr2fl/fl mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v3j
title: microCT - Bone Tissue of a Ctgf-/- mouse at P0

description: Mouse ID: CP059 This dataset includes microCT scans of the skull of a Ctgf-/- mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v5y
title: microCT - Soft Tissue of Wnt1-Cre;Tgfbr2fl/fl;Alk5fl/+ mouse at E18.5

description: Mouse ID: JI120 This dataset includes a microCT scan of the soft tissue of a Wnt1-Cre;Tgfbr2fl/fl;Alk5fl/+ mouse at stage E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v74
title: microCT - Soft Tissue of an Msx1 Control mouse at E14.5

description: Mouse ID: AH284 This dataset includes microCT scans of the skull of a Msx1 Control mouse at E14.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v86
title: microCT - Soft Tissue of a K14-Cre;Fgfr2fl/fl mouse at E18.5

description: Mouse ID: ZZ273 This dataset includes microCT scans of the skull of a K14-Cre;Fgfr2fl/fl mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vjc
title: microCT - Soft Tissue of a K14-Cre;Tgfbr2fl/fl mouse at E14.5

description: Mouse ID: JI298 This dataset includes microCT scans of the skull of a K14-Cre;Tgfbr2fl/fl mouse at E14.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vsr
title: microMRI images of skulls of Wnt1Cre * Tgfbr2fl/fl mice at E16.5

description: microMRI images of skulls of Wnt1Cre * Tgfbr2fl/fl mice at E16.5. The dataset contains 3-D images in niftii format for each of 2 mice.
DOI: 10.25550/vwp
title: 3D Facial Norms

description: Explore the [3D Facial Norms Database](/facial_norms/) through a customizable search interface. This is the main portal for querying and downloading individual-level phenotype and genotype data based on user-defined parameters. Phenotypic data include 3D facial landmark coordinates, anthropometric facial measurements, demographic descriptors, and 3D facial surface models. **This is restricted-access human data.** To gain access to this data, you must first go through the [process outlined here](/odocs/data-guidelines/).
DOI: 10.25550/tj6
title: Micro-CT images of adult mouse skulls, Collaborative Cross NZO x WSB

description: The dataset consists of a set of images for 5 mice with one parent from the NZO strain and the other parent from the WSB strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/tqc
title: microCT - Soft Tissue of Smad4fl/fl control at E18.5

description: This dataset includes 1 microCT scan of the skull of a Smad4fl/fl mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tqy
title: Skull vault formation in individual wildtype AB fish

description: An individual fish was imaged successively from 14-36 dpf by confocal microscopy, during the period of induction and growth of the frontal and parietal bones. The fish was transgenic for col1a1a:gfp, marking chondrocytes, and for sp7:mcherry, marking osteoblasts.
DOI: 10.25550/tza
title: microMRI images of skulls of Msx1+/- mice at E13.5

description: microMRI images of skulls of Msx1+/- mice at E13.5 The dataset contains 3-D images in niftii format for 1 mouse.
DOI: 10.25550/v2j
title: microCT - Soft Tissue of a Wnt1-Cre;Tgfbr2fl/fl mouse at E18.5

description: Mouse ID: JI345 This dataset includes microCT scans of the skull of a Wnt1-Cre;Tgfbr2fl/fl mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v4p
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm422

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr2:4477194-4478921 **Name:** mCF108 **Vista Enhancer ID:** mm422 **Nearest craniofacial gene or locus:** None **Enhancer Status:** Other This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF108metadata.txt from the External Reference section