cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4990379
title: PLAAY Fitness and Yoga

description: We are an exciting, new studio that offers fun and alternative fitness for families and for those with active lifestyles. PLAAY Fitness and Yoga is a novel, innovative studio like no other. Our view is to provide a variety of fitness modalities that are fun, functional, adventuresome, and practical. We don't have cardio or strength/resistance machines. Your body is your machine and we can take you through movement that can cultivate and challenge your body and mind. Whether it is through various forms of climbing, group exercise, yoga, or personal instruction, we can help you develop core and functional strength, balance, flexibility, and coordination. PLAAY is also a relaxed, non-competitive studio offering fitness, amenities and other services to entire families, not just adult individuals. We don't just work out, we PLAAY!
DOI: 10.6084/m9.figshare.4990367
title: Measurement and analysis of the impact of time-interval, temperature and radiation dose on tumour cell survival and its application in thermoradiotherapy plan evaluation

description: <b>Purpose:</b> Biological modelling of thermoradiotherapy may further improve patient selection and treatment plan optimisation, but requires a model that describes the biological effect as a function of variables that affect treatment outcome (e.g. temperature, radiation dose). This study aimed to establish such a model and its parameters. Additionally, a clinical example was presented to illustrate the application. <b>Methods:</b> Cell survival assays were performed at various combinations of radiation dose (0–8 Gy), temperature (37–42 °C), time interval (0–4 h) and treatment sequence (radiotherapy before/after hyperthermia) for two cervical cancer cell lines (SiHa and HeLa). An extended linear-quadratic model was fitted to the data using maximum likelihood estimation. As an example application, a thermoradiotherapy plan (23 × 2 Gy + weekly hyperthermia) was compared with a radiotherapy-only plan (23 × 2 Gy) for a cervical cancer patient. The equivalent uniform radiation dose (EUD) in the tumour, including confidence intervals, was estimated using the SiHa parameters. Additionally, the difference in tumour control probability (TCP) was estimated. <b>Results:</b> Our model described the dependency of cell survival on dose, temperature and time interval well for both SiHa and HeLa data (<i>R</i><sup>2</sup>=0.90 and <i>R</i><sup>2</sup>=0.91, respectively), making it suitable for biological modelling. In the patient example, the thermoradiotherapy plan showed an increase in EUD of 9.8 Gy that was robust (95% CI: 7.7–14.3 Gy) against propagation of the uncertainty in radiobiological parameters. This corresponded to a 20% (95% CI: 15–29%) increase in TCP. <b>Conclusions:</b> This study presents a model that describes the cell survival as a function of radiation dose, temperature and time interval, which is essential for biological modelling of thermoradiotherapy treatments.
DOI: 10.6084/m9.figshare.4990367.v1
title: Measurement and analysis of the impact of time-interval, temperature and radiation dose on tumour cell survival and its application in thermoradiotherapy plan evaluation

description: <b>Purpose:</b> Biological modelling of thermoradiotherapy may further improve patient selection and treatment plan optimisation, but requires a model that describes the biological effect as a function of variables that affect treatment outcome (e.g. temperature, radiation dose). This study aimed to establish such a model and its parameters. Additionally, a clinical example was presented to illustrate the application. <b>Methods:</b> Cell survival assays were performed at various combinations of radiation dose (0–8 Gy), temperature (37–42 °C), time interval (0–4 h) and treatment sequence (radiotherapy before/after hyperthermia) for two cervical cancer cell lines (SiHa and HeLa). An extended linear-quadratic model was fitted to the data using maximum likelihood estimation. As an example application, a thermoradiotherapy plan (23 × 2 Gy + weekly hyperthermia) was compared with a radiotherapy-only plan (23 × 2 Gy) for a cervical cancer patient. The equivalent uniform radiation dose (EUD) in the tumour, including confidence intervals, was estimated using the SiHa parameters. Additionally, the difference in tumour control probability (TCP) was estimated. <b>Results:</b> Our model described the dependency of cell survival on dose, temperature and time interval well for both SiHa and HeLa data (<i>R</i><sup>2</sup>=0.90 and <i>R</i><sup>2</sup>=0.91, respectively), making it suitable for biological modelling. In the patient example, the thermoradiotherapy plan showed an increase in EUD of 9.8 Gy that was robust (95% CI: 7.7–14.3 Gy) against propagation of the uncertainty in radiobiological parameters. This corresponded to a 20% (95% CI: 15–29%) increase in TCP. <b>Conclusions:</b> This study presents a model that describes the cell survival as a function of radiation dose, temperature and time interval, which is essential for biological modelling of thermoradiotherapy treatments.
DOI: 10.5281/zenodo.3994732
title: Tree species phenology survey suitable for Sentinel-2

description: Phenological monitoring for 14 plots of 7 deciduous tree species from 2017 to end of 2019 located in the south west of France near the city of Toulouse. Temporal revisit was every 10 day according to the day of visit of Sentinel-2. Plots are homogeneous in the dominant species on more than 10 x 10 m. Species surveyed are (two plots for each) : Aspen (<em>Populus spp.</em>) Black robust (<em>Robinia pseudoacacia)</em> European ash (<em>Fraxis excelsior</em>) Oak (<em>Quercus petraea</em>) Red oak (<em>Quercus rubra)</em> Silver birch (<em>Betula pendula</em>) Willow (<em>Salix alba)</em> Each table is in csv extension and correspond for a year of survey. Available columns are : 'plot', 'latin_name', 'date', 'photo', 'BBCH', 'BBCH_flower', 'CACLOSURE', 'CACO', 'CACOmodified', 'CHLO', 'comment'. Each year is a in distinct file following this convention : <code>phenosurvey_{year}.csv</code> <code>More information are avaialble in the README.pdf file.</code>
DOI: 10.6084/m9.figshare.4989806
title: DTU amount differences considering blood samples

description: DTU amount differences considering blood samples
DOI: 10.6084/m9.figshare.4989809
title: DTU amount differences without considering blood samples

description: DTU amount differences without considering blood samples.
DOI: 10.6084/m9.figshare.4989800
title: Modifier genes

description: The modifier genes form the paper "Langfelder P, et al. Integrated genomics and proteomics define huntingtin CAG length-dependent networks in mice. Nature Neuroscience. 2016; 19: 623–633." It needs to be stated there are 520 mouse genes in the data, including 89 disease genes (listed in the first column) and 431 non-disease genes (listed in the second column).<br>
DOI: 10.6084/m9.figshare.4989806.v2
title: DTU amount differences considering blood samples

description: DTU amount differences considering blood samples
DOI: 10.6084/m9.figshare.4989809.v2
title: DTU amount differences without considering blood samples

description: DTU amount differences without considering blood samples.
DOI: 10.6084/m9.figshare.4989785
title: striatum_6m_FPKM.xls

description: The gene expression data were obtained from the striatum tissue of 6-month-old Huntington’s disease (HD) mice through RNA-seq technology. The gene expression data contain 4 genotypes, including polyQ 92, polyQ 111, polyQ 140, and polyQ 175. Each genotype has 8 replications. Thus, the gene expression data comprise 32 samples in total. The gene expression data contain 23,351 genes.<br>
DOI: 10.6084/m9.figshare.4989806.v1
title: Cantidad de linajes con sangre

description: Cantidad de linajes detectados considerando muestra de sangre
DOI: 10.6084/m9.figshare.4989800.v1
title: Modifier genes

description: The modifier genes form the paper "Langfelder P, et al. Integrated genomics and proteomics define huntingtin CAG length-dependent networks in mice. Nature Neuroscience. 2016; 19: 623–633." It needs to be stated there are 520 mouse genes in the data, including 89 disease genes (listed in the first column) and 431 non-disease genes (listed in the second column).<br>
DOI: 10.6084/m9.figshare.4989785.v1
title: striatum_6m_FPKM.xls

description: The gene expression data were obtained from the striatum tissue of 6-month-old Huntington’s disease (HD) mice through RNA-seq technology. The gene expression data contain 4 genotypes, including polyQ 92, polyQ 111, polyQ 140, and polyQ 175. Each genotype has 8 replications. Thus, the gene expression data comprise 32 samples in total. The gene expression data contain 23,351 genes.<br>
DOI: 10.6084/m9.figshare.4989809.v1
title: Cantidad de linajes sin sangre

description: Cantidad de linajes detectados sin considerar muestras de sangre.
DOI: 10.17045/sthlmuni.4989773
title: Android Process Memory String Dumps Dataset

description: A dataset containing 2375 samples of Android Process Memory String Dumps. The dataset is broadly composed of 2 classes: "Benign App" Memory Dumps and "Malicious App" Memory Dumps, respectively, split into 2 ZIP archives. The ZIP archives in total are approximately 17GB in size, however the unzipped contents are approximately 67GB.<br><br>This dataset is derived from a subset of the APK files originally made freely available for research through the AndroZoo project [1]. The AndroZoo project collected millions of Android applications and scanned them with the VirusTotal online malware scanning service, thereby classifying most of the apps as either malicious or benign at the time of scanning. <br>The process memory dumps in this dataset were generated through running the subset of APK files from the AndroZoo dataset in an Android Emulator, capturing the process memory of the individual process and subsequently extracting only the strings from the process memory dump. This was facilitated through building 2 applications: <i>Coriander</i> and <i>AndroMemDumpBeta</i> which facilitate the running of Apps on Android Emulators, and the capturing of process memory respectively. The source code for these software applications is available on Github. <br><br>The individual samples are labelled with the SHA256 hash filename from the original AndroZoo labeling and the application package names extracted from within the specific APK manifest file. They also contain a time-stamp for when the memory dumping process took place for the specific file. The file extension used is ".dmp" to indicate that the files are memory dumps, however they only contain strings, and thus can be viewed in any simple text editor.<br><br>A subset of the first 10000 APK files from the original AndroZoo dataset is also included within this dataset. The metadata of these APK files is present in the file "AndroZoo-First-10000" and the 2375 Android Apps that are the main subjects of our dataset are extracted from here..<br><br>Our dataset is intended to be used in furthering our research related to Machine Learning-based Triage for Android Memory Forensics. It has been made openly available in order to foster opportunities for collaboration with other researchers, to enable validation of research results as well as to enhance the body of knowledge in related areas of research.<br><br>References:<br>[1]. K. Allix, T. F. Bissyandé, J. Klein, and Y. Le Traon. AndroZoo: Collecting Millions of Android Apps for the Research Community. Mining Software Repositories (MSR) 2016<br>
DOI: 10.6084/m9.figshare.4989770
title: Dataset for: Determination of Inter- and Intra-ionic Interactions in a Monofluorinated Imidazolium Ionic Liquid by a Combination of X-Ray Crystallography and NOE NMR Spectroscopy

description: We report the very first application of a Transient 1D 1H{19F} NOE NMR experiment in neat ionic liquids. In comparison to classical 2D HOESY NMR spectroscopy,[1,2] a substantial reduction in measurement time is gained with comparable quality and information content of the spectra. In combination with classical X-ray crystallography, we have applied this technique for the determination of inter-ionic distances (i.e. probabilities of presence) utilizing an ionic liquid containing a monofluorinated imidazilium cation.
DOI: 10.17045/sthlmuni.4989773.v1
title: Android Process Memory String Dumps Dataset

description: A dataset containing 2375 samples of Android Process Memory String Dumps. The dataset is broadly composed of 2 classes: "Benign App" Memory Dumps and "Malicious App" Memory Dumps, respectively, split into 2 ZIP archives. The ZIP archives in total are approximately 17GB in size, however the unzipped contents are approximately 67GB.<br><br>This dataset is derived from a subset of the APK files originally made freely available for research through the AndroZoo project [1]. The AndroZoo project collected millions of Android applications and scanned them with the VirusTotal online malware scanning service, thereby classifying most of the apps as either malicious or benign at the time of scanning. <br>The process memory dumps in this dataset were generated through running the subset of APK files from the AndroZoo dataset in an Android Emulator, capturing the process memory of the individual process and subsequently extracting only the strings from the process memory dump. This was facilitated through building 2 applications: <i>Coriander</i> and <i>AndroMemDumpBeta</i> which facilitate the running of Apps on Android Emulators, and the capturing of process memory respectively. The source code for these software applications is available on Github. <br><br>The individual samples are labelled with the SHA256 hash filename from the original AndroZoo labeling and the application package names extracted from within the specific APK manifest file. They also contain a time-stamp for when the memory dumping process took place for the specific file. The file extension used is ".dmp" to indicate that the files are memory dumps, however they only contain strings, and thus can be viewed in any simple text editor.<br><br>A subset of the first 10000 APK files from the original AndroZoo dataset is also included within this dataset. The metadata of these APK files is present in the file "AndroZoo-First-10000" and the 2375 Android Apps that are the main subjects of our dataset are extracted from here..<br><br>Our dataset is intended to be used in furthering our research related to Machine Learning-based Triage for Android Memory Forensics. It has been made openly available in order to foster opportunities for collaboration with other researchers, to enable validation of research results as well as to enhance the body of knowledge in related areas of research.<br><br>References:<br>[1]. K. Allix, T. F. Bissyandé, J. Klein, and Y. Le Traon. AndroZoo: Collecting Millions of Android Apps for the Research Community. Mining Software Repositories (MSR) 2016<br>
DOI: 10.6084/m9.figshare.4989770.v1
title: Dataset for: Determination of Inter- and Intra-ionic Interactions in a Monofluorinated Imidazolium Ionic Liquid by a Combination of X-Ray Crystallography and NOE NMR Spectroscopy

description: We report the very first application of a Transient 1D 1H{19F} NOE NMR experiment in neat ionic liquids. In comparison to classical 2D HOESY NMR spectroscopy,[1,2] a substantial reduction in measurement time is gained with comparable quality and information content of the spectra. In combination with classical X-ray crystallography, we have applied this technique for the determination of inter-ionic distances (i.e. probabilities of presence) utilizing an ionic liquid containing a monofluorinated imidazilium cation.
DOI: 10.6084/m9.figshare.4989710
title: New draft item

description: The data consists of resting-state fMRI network time-courses of 405 subjects. Each time-course has 148 time-points (TR = 2seconds). 50 networks are estimated by Independent Components Analysis (ICA).
DOI: 10.6084/m9.figshare.4989737
title: Metrics from Compressing the Human Genome with Six Programs

description: Metrics from running six compression programs, namely brotli, bzip2, gzip, 7z, xz and zstd, on the human genome from the Human Genome project, in 2bit binary format. For each program, the dataset recordsthe time it takes to compress the data, in seconds,the resulting compressed size, in bytes,the time it takes to decompress the data, in seconds, andpeak memory usage, in kilobytes.Timings are for an Amazon Web Services m3.medium instance.<br>
DOI: 10.6084/m9.figshare.4989710.v1
title: New draft item

description: The data consists of resting-state fMRI network time-courses of 405 subjects. Each time-course has 148 time-points (TR = 2seconds). 50 networks are estimated by Independent Components Analysis (ICA).
DOI: 10.6084/m9.figshare.4989737.v1
title: Metrics from Compressing the Human Genome with Six Programs

description: Metrics from running six compression programs, namely brotli, bzip2, gzip, 7z, xz and zstd, on the human genome from the Human Genome project, in 2bit binary format. For each program, the dataset recordsthe time it takes to compress the data, in seconds,the resulting compressed size, in bytes,the time it takes to decompress the data, in seconds, andpeak memory usage, in kilobytes.Timings are for an Amazon Web Services m3.medium instance.<br>
DOI: 10.6084/m9.figshare.4989593
title: VO2 Lagos et al 2017 Functional Ecology.xlsx

description: He we have a series of data of oxygen consumption in several marine sessile species commonly found in Australia. Species are categorized by body shape (flat-erect ) and invasion status ( invasive-native). Also the location were organisms were collected is provided. <br>
DOI: 10.6084/m9.figshare.4989593.v1
title: VO2 Lagos et al 2017 Functional Ecology.xlsx

description: He we have a series of data of oxygen consumption in several marine sessile species commonly found in Australia. Species are categorized by body shape (flat-erect ) and invasion status ( invasive-native). Also the location were organisms were collected is provided. <br>
DOI: 10.6084/m9.figshare.4987193
title: Behavioural data

description: Behavioural data supporting the findings presented in "Central Insulin modulated food valuation via mesolimbic pathways"<br>
DOI: 10.6084/m9.figshare.4987169
title: TLR_pathway_sequences

description: Toll-like receptor pathway homologs identified across deuterostomes. Homology assignment methodology can be seen in (DOI placeholder).
DOI: 10.6084/m9.figshare.4987184
title: Browne and Karubian 2018 - Rare genotype advantage promotes survival and genetic diversity of a tropical palm

description: Data on survival and genotype of <i>Oenocarpus bataua</i> seeds and seedlings from Bilsa Biological Reserve, Esmeraldas Province, Ecuador.<br>Featured in publication: L. Browne & J. Karubian. 2018. Rare genotype advantage promotes survival and genetic diversity of a tropical palm. New Phytologist. 218: 1658–1667.
DOI: 10.6084/m9.figshare.4987193.v1
title: Behavioural data

description: Behavioural data supporting the findings presented in "Central Insulin modulated food valuation via mesolimbic pathways"<br>
DOI: 10.21954/ou.rd.4987112
title: Data MFLtwitterati research.pdf

description: Results from research into the use of Twitter by a Community of Practice of language teachers for professional development. <br>Based on data collected through a survey (n=116) and interviews (n=11), it describes how this collective of teachers use the hashtag and evaluates the impact of their Twitter network on their teaching practices. <br>
DOI: 10.6084/m9.figshare.4987088
title: Placental lipoprotein lipase DNA methylation alterations are associated with gestational diabetes and body composition at 5 years of age

description: Gestational diabetes mellitus (GDM) is associated with obesity in childhood. This suggests that consequences of <i>in utero</i> exposure to maternal hyperglycemia extend beyond the fetal development, possibly through epigenetic programming. The aims of this study were to assess whether placental DNA methylation (DNAm) marks were associated with maternal GDM status and to offspring body composition at 5 years old in a prospective birth cohort. DNAm levels were measured in the fetal side of the placenta in 66 samples (24 from GDM mothers) using bisDNA-pyrosequencing. Anthropometric and body composition (bioimpedance) were measured in children at 5 years of age. Mann-Whitney and Spearman tests were used to assess associations between GDM, placental DNAm levels at the <i>lipoprotein lipase</i> (<i>LPL</i>) locus and children's weight, height, body mass index (BMI), body fat, and lean masses at 5 years of age. Weight, height, and BMI z-scores were computed according to the World Health Organization growth chart. Analyses were adjusted for gestational age at birth, child sex, maternal age, and pre-pregnancy BMI. <i>LPL</i> DNAm levels were positively correlated with birth weight z-scores (r = 0.252, <i>P</i> = 0.04), and with mid-childhood weight z-scores (r = 0.314, <i>P</i> = 0.01) and fat mass (r = 0.275, <i>P</i> = 0.04), and negatively correlated with lean mass (r = −0.306, <i>P</i> = 0.02). We found a negative correlation between <i>LPL</i> DNAm and mRNA levels in placenta (r = −0.459; <i>P</i> &lt; 0.001), which highlights the regulation of transcriptional activity by these epivariations. We demonstrated that alterations in fetal placental DNAm levels at the <i>LPL</i> gene locus are associated with the anthropometric profile in children at 5 years of age. These findings support the concept of fetal metabolic programming through epigenetic changes.
DOI: 10.6084/m9.figshare.4987184.v2
title: Browne and Karubian 2018 - Rare genotype advantage promotes survival and genetic diversity of a tropical palm

description: Data on survival and genotype of <i>Oenocarpus bataua</i> seeds and seedlings from Bilsa Biological Reserve, Esmeraldas Province, Ecuador.<br>Featured in publication: L. Browne & J. Karubian. 2018. Rare genotype advantage promotes survival and genetic diversity of a tropical palm. New Phytologist. 218: 1658–1667.
DOI: 10.6084/m9.figshare.4987088.v1
title: Placental lipoprotein lipase DNA methylation alterations are associated with gestational diabetes and body composition at 5 years of age

description: Gestational diabetes mellitus (GDM) is associated with obesity in childhood. This suggests that consequences of <i>in utero</i> exposure to maternal hyperglycemia extend beyond the fetal development, possibly through epigenetic programming. The aims of this study were to assess whether placental DNA methylation (DNAm) marks were associated with maternal GDM status and to offspring body composition at 5 years old in a prospective birth cohort. DNAm levels were measured in the fetal side of the placenta in 66 samples (24 from GDM mothers) using bisDNA-pyrosequencing. Anthropometric and body composition (bioimpedance) were measured in children at 5 years of age. Mann-Whitney and Spearman tests were used to assess associations between GDM, placental DNAm levels at the <i>lipoprotein lipase</i> (<i>LPL</i>) locus and children's weight, height, body mass index (BMI), body fat, and lean masses at 5 years of age. Weight, height, and BMI z-scores were computed according to the World Health Organization growth chart. Analyses were adjusted for gestational age at birth, child sex, maternal age, and pre-pregnancy BMI. <i>LPL</i> DNAm levels were positively correlated with birth weight z-scores (r = 0.252, <i>P</i> = 0.04), and with mid-childhood weight z-scores (r = 0.314, <i>P</i> = 0.01) and fat mass (r = 0.275, <i>P</i> = 0.04), and negatively correlated with lean mass (r = −0.306, <i>P</i> = 0.02). We found a negative correlation between <i>LPL</i> DNAm and mRNA levels in placenta (r = −0.459; <i>P</i> &lt; 0.001), which highlights the regulation of transcriptional activity by these epivariations. We demonstrated that alterations in fetal placental DNAm levels at the <i>LPL</i> gene locus are associated with the anthropometric profile in children at 5 years of age. These findings support the concept of fetal metabolic programming through epigenetic changes.