cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1495070
title: Synthetically Spoken STAIR

description: This dataset consists of synthetically spoken captions for the STAIR dataset. Following the same methodology as Chrupała <em>et al.</em> (see article | dataset | code) we generated speech for each caption of the STAIR dataset using Google's Text-to-Speech API. This dataset was used for visually grounded speech experiments (see article accepted at ICASSP2019). <pre><code>@INPROCEEDINGS{8683069, author={W. N. {Havard} and J. {Chevrot} and L. {Besacier}}, booktitle={ICASSP 2019 - 2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)}, title={Models of Visually Grounded Speech Signal Pay Attention to Nouns: A Bilingual Experiment on English and Japanese}, year={2019}, volume={}, number={}, pages={8618-8622}, keywords={information retrieval;natural language processing;neural nets;speech processing;word processing;artificial neural attention;human attention;monolingual models;part-of-speech tags;nouns;neural models;visually grounded speech signal;English language;Japanese language;word endings;cross-lingual speech-to-speech retrieval;grounded language learning;attention mechanism;cross-lingual speech retrieval;recurrent neural networks.}, doi={10.1109/ICASSP.2019.8683069}, ISSN={2379-190X}, month={May},}</code></pre> The dataset comprises the following files : <strong>mp3-stair.tar.gz</strong> :<strong> </strong>MP3 files of each caption in the STAIR dataset. Filenames have the following pattern <em>imageID_captionID</em>, where both <em>imageID</em> and <em>captionID </em>correspond to those provided in the original dataset (see annotation format here) <strong>dataset.mfcc.npy</strong> : Numpy array with MFCC vectors for each caption. MFCC were extracted using python_speech_features with default configuration. To know to which caption the MFCC vectors belong to, you can use the files dataset.words.txt and dataset.ids.txt. <strong>dataset.words.txt</strong> : Captions corresponding to each MFCC vector (line number = position in Numpy array, starting from 0) <strong>dataset.ids.txt </strong>: IDs of the captions (<em>imageID_captionID</em>) corresponding to each MFCC vector (line number = position in Numpy array, starting from 0) Splits test <strong>test.txt </strong>: captions comprising the test split <strong>test_ids.txt</strong>: IDs of the captions in the test split <strong>test_tagged.txt </strong>: tagged version of the test split <strong>test-alignments.json.zip </strong>: Forced alignments of all the captions in the test split. (dictionary where the key corresponds to the caption ID in the STAIR dataset). <em>Due to an unknown error during upload, the JSON file had to be zipped...</em> train <strong>train.txt </strong>: captions comprising the train split <strong>train_ids.txt </strong>: IDs of the captions in the train split <strong>train_tagged.txt </strong>: tagged version of the train split val <strong>val.txt </strong>: captions comprising the val split <strong>val_ids.txt </strong>: IDs of the captions in the val split <strong>val_tagged.txt </strong>: tagged version of the val split
DOI: 10.5281/zenodo.1523170
title: Dataset for EASY: Efficient Arbiter SYnthesis from Multi-threaded Code

description: High-Level Synthesis (HLS) tools automatically transform a high level specification of a circuit into a low-level RTL description. Traditionally, HLS tools have operated on sequential code, however in recent years there has been a drive to synthesize multi-threaded code. A major challenge facing HLS tools in this context is how to automatically partition memory amongst parallel threads to fully exploit the bandwidth available on an FPGA device and avoid memory contention. Current automatic memory partitioning techniques have inefficient arbitration due to conservative assumptions regarding which threads may access a given memory bank. In this paper, we address this problem through formal verification techniques, permitting a less conservative, yet provably correct circuit to be generated. We perform a static analysis on the code to determine which memory banks are shared by which threads. This analysis enables us to optimize the arbitration efficiency of the generated circuit. We apply our approach to the LegUp HLS tool and show for a set of typical application benchmarks we can achieve up to 87% area savings, and 39% execution time improvement, with little additional compilation time. This repository includes all the measured results for this work.
DOI: 10.21223/p3/byygsk
title: Dataset for: The "Performance of Different Orange-Fleshed- Sweetpotato Varieties under Triple S Technology"

description: Triple S (Storage in Sand and Sprouting) has emerged as future technology to conserve sweetpotato planting material in areas with long dry season. There has been a growing interest to scale up Triple S technology to sweetpotato farmers that live in dry areas of Sub-Saharan Africa. Although, the varieties in different countries are different, no evidence on the storage roots of different sweetpotato varieties performance in Triple S. Therefore, this study was conducted to understand sprouting, survival and planting material multiplication performance of roots of eight sweetpotato varieties in Triple S. Small, medium and large size root from each variety is stored in the standard Triple S during December, 2017 to End of March, 2018. From each variety, 60 roots (twenty roots from each size) are stored in one container. The experiment evaluated two factors, variety with 8 levels and root size with three levels in randomized complete block design (RCBD). Roots of variety Naspot 12 was strongest but variety Halaba was weakest performer in Triple S with 95% and 16% of survival and sprouting respectively. Roots of Naspot 13 were the most non-sprouting character with 50% non sprouted from roots stored in Triple S. The proportion of drying is also different among varieties and sizes with small size roots of Variety Halaba dried most. Generally; there is performance difference between varieties and size of same variety in terms of sprouting and survival percentage in Triple S. The current result suggests that variety is important factor for the success of Triple S and storage in sand is promising to prolong shelf life and long term availability of fresh roots of none sprouting varieties such as Naspot 13.
DOI: 10.5066/p9t6qgrl
title: Tag retention and survival of juvenile bighead carp implanted with an acoustic tag at three temperatures

description: Bighead carp Hypophthalmichthys nobilis and silver carp H. molitrix (together, the bigheaded carps) are considered among the most problematic of invasive fishes in North. Movement and behavior of bigheaded carps has been studied through telemetry methods although the majority of work has occurred on large, adult fish; smaller, juvenile bigheaded carps have not yet been evaluated. Reductions in the size of transmitters have provided an opportunity for such work. However, the effects of surgical implantation of telemetry tags on small bigheaded carps have not previously been evaluated. The goal of this study was to determine tag retention and survival associated with implanting acoustic tags into small bighead carp (range 128-152 mm total length) at three separate temperatures (13 degrees C, 18 degrees C, and 23 degrees C), as well as determining differences in fitness of the carp, defined as changes in weight or critical swimming speed.
DOI: 10.7910/dvn/8ajyxz/neeuvc
title: mergeddata_stata12.tab

description: Study 1 data
DOI: 10.7910/dvn/8ajyxz/o7xoum
title: bsudata.tab

description: Study 2 data
DOI: 10.7910/dvn/fuo7fc/4ajxkv
title: combinedAEARegGraphs.png

description: Updated through October 2018
DOI: 10.4119/unibi/2932236
title: Training of a Neural Network for learning a model of joint transformations

description: The data contains joint angle data from walking stick insects. It provides matching sets of two neighboring legs that lead these two legs towards the same position in space. During climbing through twigs insects exploit the information on footholds between these neighboring legs. This requires transformations that mediate between the legs, in order to guide one leg to the position of the other leg. Here, different neural network architectures are learned and compared. The neural networks are realized in the keras framework. The python scripts compare different neural network architectures (different size of hidden layer or introducing skip connections) evaluating the Mean Squared error. Recent versions can be found at: https://github.com/malteschilling/joint_mappings_nn
DOI: 10.7910/dvn/ilat5b/keecrc
title: news-week-18aug24.v3.tab

description: :unav
DOI: 10.7910/dvn/ilat5b/xpcdoz
title: news-week-17aug24.v2.tab

description: :unav
DOI: 10.5886/dpjv5u
title: Species occurence dataset of the pantropical Caesalpinia Group

description: A total of 17,260 species occurrence data spanning more than 200 species and infraspecific taxa and all 26 genera, were assembled to generate the Caesalpinia Group distribution maps. Vouchered occurrence records (Basis of Record: Preserved Specimen) were downloaded from the Global Biodiversity Information Facility (GBIF; (June 2017), SEINet (http://swbiodiversity.org/seinet/) and DryFlor (http://www.dryflor.info/). To improve accuracy, the distribution of each species was mapped and checked against monographs or expert knowledge, and obvious outliers removed. Occurrence points located in the sea, in botanical gardens, on the centroid of a country, or with coordinates only at the level of degrees, were removed. Data handling was performed in R (R Core Team, 2018). This dataset was generated as part of the following publication: Gagnon, E., Ringelberg, J., Lewis, G.P., Bruneau, A. & Hughes, C.E. (2018; accepted, pending revisions) Global Succulent Biome phylogenetic conservatism across the pantropical Caesalpinia Group (Leguminosae). New Phytologist.
DOI: 10.5066/p9gtonfb
title: Hawaii Island biodiversity trends across time and space, 1977 and 2015

description: These are the datasets for the Hawaii Forest Bird Survey (HFBS) and the Hawaiian Biodiversity Trends Across Time and Space project that systematically characterized plant and bird communities. The HFBS sampled from transects spanning all major Hawaiian Islands except O'ahu. This extensive dataset has now been organized into a database and associated geographic information system (GIS) layers. This baseline provides an opportunity to assess how forest ecosystems and their constituent bird and plant populations have changed over time. As part of the HaBiTATS project, a select area on Hawai'i Island was surveyed in 2015 with the objective of demonstrating the potential of using the HFBS methodology to reassess the status of bird and plant communities across multiple geographic regions and islands. The results of the comparative study presented herein highlight examples of the apparent vulnerability and resiliency of native-dominated Hawaiian ecosystems. Specific study objectives were to: (1) collect information on plant and bird species community composition, abundance, and spatial distribution following the original HFBS methodology; (2) assess changes in several biodiversity metrics; (3) examine changes in the distribution of invasive non-native species as well as changes in land use as potential drivers of native biodiversity patterns, and (4) demonstrate field and data analysis methods that may be applied to a large-scale biodiversity monitoring program.
DOI: 10.5066/p966qusi
title: Forest community biomass and growth in Great Dismal Swamp, Virginia and North Carolina, USA

description: Forest surveys were conducted in nine 20 m x 25 m study plots, split into 3 representatives each for three forest types in Great Dismal Swamp, VA and NC, USA, December 2015 - February 2018. Trees, saplings, and shrubs were identified to species and measured for estimates of standing stocks. Standing stock data include: tree diameter at breast height (dbh), height, and condition; sapling dbh; shrub diameter at root collar, and height. In each plot, roughly 10 co-dominant trees were equipped with dendrometer bands and measured annually for growth estimates.
DOI: 10.5281/zenodo.1622251
title: High performance cation exchange membranes synthesized via in-situ emulsion polymerization without organic solvents and corrosive acids

description: Dataset supporting journal publication:

<strong>Abstract:</strong> The synthesis of cation exchange membranes (CEMs) usually involves using organic solvents and/or sulfonation process. In this study, green and scalable synthesis of high performance CEMs is achieved without organic solvents and sulfonation. The synthesis is carried out via in-situ polymerization of lithium styrene sulfonate in porous support. Different preparation procedures are developed and optimized. Functional sulfonate groups were successfully loaded onto and into the membrane support, as verified by FTIR. Besides, water plays an important role during membrane synthesis. By reducing the amount of water used, the ratio of functional polymers to membrane support in the synthesized CEMs is increased. Therefore, the synthesized CEMs show increased ion exchange capacity (IEC). This is significant because it means that high IEC can be achieved without introducing cation exchange resins to the membranes. Finally, the synthesized membranes demonstrate high desalination performance. This new methodology may shed new light on preparing CEMs in an efficient and eco-friendly way.
DOI: 10.5281/zenodo.1622252
title: High performance cation exchange membranes synthesized via in-situ emulsion polymerization without organic solvents and corrosive acids

description: Dataset supporting journal publication:

<strong>Abstract:</strong> The synthesis of cation exchange membranes (CEMs) usually involves using organic solvents and/or sulfonation process. In this study, green and scalable synthesis of high performance CEMs is achieved without organic solvents and sulfonation. The synthesis is carried out via in-situ polymerization of lithium styrene sulfonate in porous support. Different preparation procedures are developed and optimized. Functional sulfonate groups were successfully loaded onto and into the membrane support, as verified by FTIR. Besides, water plays an important role during membrane synthesis. By reducing the amount of water used, the ratio of functional polymers to membrane support in the synthesized CEMs is increased. Therefore, the synthesized CEMs show increased ion exchange capacity (IEC). This is significant because it means that high IEC can be achieved without introducing cation exchange resins to the membranes. Finally, the synthesized membranes demonstrate high desalination performance. This new methodology may shed new light on preparing CEMs in an efficient and eco-friendly way.
DOI: 10.5281/zenodo.1634383
title: Evolution of IT system and TEM camera performance

description: This Excel file collates throughput specifications of transmission electron microscopy (TEM) cameras, mass storage, network and memory between 1996 and 2018. The absolute and relative development of the throughput is analyzed in charts.
DOI: 10.5281/zenodo.1627854
title: Radiation damage in small molecule crystallography - experiment 1

description: First data set in a series of experiments investigating the effect of radiation damage to a small molecule crystal structure. Sample: catena-(bis(m2-Glycyl-histidinato-N,N',O)-nickel(II) heptahydrate) sum formula: C16H36N8NiO13 Wavelength: 0.6889 Angstrom Temperature: 100 K Flux: 8.8•10<sup>9 </sup>ph/s Crystal size: 0.050 x 0.010 x 0.010 mm Calculated dose (DWD) per scan: 0.63 MGy
DOI: 10.7910/dvn/jjjbq0/3bx6ye
title: 004_Ethiopia_A&T_BaselineSurvey_Children_Data.xls

description: This is a codebook.
DOI: 10.7910/dvn/jjjbq0/a315jv
title: 002_Ethiopia_A&T_BaselineSurvey_Children_Data.tab

description: This is a data file. All the modules are included this file.
DOI: 10.5281/zenodo.1680998
title: Sequence data for 'Machine-driven parameter-space exploration of biochemical reactions'

description: The development of complex, multi-step <em>omics</em> methods in molecular biology is a laborious, costly, iterative and often intuition-bound process where an optimum is sought in a parameter space through step-by-step optimisations. The the difficulty of miniaturising assays and the cost of the experiments limit the dynamic range and the number of parameters that can be explored. However, because of non-linearities of the response of biochemical systems to their reagent concentrations, a broad dynamic range is necessary. Here we demonstrate the use of a high-performance nanoliter handling platform (Labcyte Echo 525) and computer generation of liquid transfer programs to explore in quadruplicates more than 600 combination of 4 parameters of a biochemical reaction, which lead us to uncover non-linear responses, parameter interactions and novel mechanical insights. With the increased availability of « <em>cloud biology</em>» computer-driven laboratory platforms, our results participate in changing methods development for biotechnology towards reproducible, computer-aided exhaustive characterisation of biochemical systems. This dataset contains the raw sequencing data produced with an Illumina MiSeq instrument for this project. FASTQ files and sample sheets are found in the usual location (Data/Intensities/BaseCalls). The "Thumbnail_Images" and "L001" directories were deleted to save space. Run IDs: 171227_M00528_0321_000000000-B4GLP, 180403_M00528_0348_000000000-B4GP8, 180517_M00528_0364_000000000-BRGK6, 180123_M00528_0325_000000000-B4PCK, 180411_M00528_0351_000000000-BN3BL, 180606_M00528_0367_000000000-BN3FG, 180326_M00528_0346_000000000-B4GJR, 180501_M00528_0359_000000000-B4PJY, 180607_M00528_0368_000000000-BN9KM
DOI: 10.6084/m9.figshare.23792604
title: Data and R code for elicitation

description: The file "Elicitation data" contains the data resulting from an elicitation process for defining ecological restoration activities, and the file "Rcode Elicitation" contains the corresponding code for estimating the parameters of the elicited distributions.
DOI: 10.6084/m9.figshare.23915961
title: Supporting Data: Actinide Arene-Metalates: 2. A Neutral Uranium Bis(Anthracenide) Complex and Elucidation of its Electronic Structure

description: Supporting computational data for the following publication:J. Murillo, R. Bhowmick, K. L. M. Harriman, A. Gomez-Torres, J. Wright, P. Miró, A. Metta-Magaña, M. Murugesu, B. Vlaisavljevich, and S. Fortier “Actinide Arene-Metalates: 2. A Neutral Uranium Bis(Anthracenide) Complex and Elucidation of its Electronic Structure” <i>Chem. Commun.</i> <b>2022</b>, 58, 9112-9115.
DOI: 10.6084/m9.figshare.23915961.v1
title: Supporting Data: Actinide Arene-Metalates: 2. A Neutral Uranium Bis(Anthracenide) Complex and Elucidation of its Electronic Structure

description: Supporting computational data for the following publication:J. Murillo, R. Bhowmick, K. L. M. Harriman, A. Gomez-Torres, J. Wright, P. Miró, A. Metta-Magaña, M. Murugesu, B. Vlaisavljevich, and S. Fortier “Actinide Arene-Metalates: 2. A Neutral Uranium Bis(Anthracenide) Complex and Elucidation of its Electronic Structure” <i>Chem. Commun.</i> <b>2022</b>, 58, 9112-9115.
DOI: 10.18112/openneuro.ds004668.v1.0.0
title: Food and Brain Study
DOI: 10.6084/m9.figshare.23916015
title: Supporting Data: Isolation of Uranium(III) Primary Phosphido Complexes

description: Supporting DFT computational data for the following publication:D. Perales, R. R. Bhowmick, M. Zeller, P. Miró, B. Vlaisavljevich, and S. C. Bart “Isolation of Uranium(III) Primary Phosphido Complexes” <i>Chem. Commun.</i> <b>2022</b>, 58, 9630-9633.
DOI: 10.6084/m9.figshare.23916015.v1
title: Supporting Data: Isolation of Uranium(III) Primary Phosphido Complexes

description: Supporting DFT computational data for the following publication:D. Perales, R. R. Bhowmick, M. Zeller, P. Miró, B. Vlaisavljevich, and S. C. Bart “Isolation of Uranium(III) Primary Phosphido Complexes” <i>Chem. Commun.</i> <b>2022</b>, 58, 9630-9633.
DOI: 10.5281/zenodo.8163972
title: Ca2+ imaging data for: A rigidity transition of MEC-2/Stomatin condensates controls neuronal mechanotransduction during touch sensing

description: Calcium imaging data from Sanfeliu et al, NCB, 2023. Project contains fluorescence data to characterize the activity of the touch receptor neurons (TRNs) - which are mechanically activated upon touch – in the model organism <em>Caenorhabditis elegans</em>. The set of data includes wild-type animals as a reference and two different mutants to understand their role during touch sensation: MEC-2(R385H) and UNC-89 knock-out.
DOI: 10.5281/zenodo.8163971
title: Ca2+ imaging data for: A rigidity transition of MEC-2/Stomatin condensates controls neuronal mechanotransduction during touch sensing

description: Calcium imaging data from Sanfeliu et al, NCB, 2023. Project contains fluorescence data to characterize the activity of the touch receptor neurons (TRNs) - which are mechanically activated upon touch – in the model organism <em>Caenorhabditis elegans</em>. The set of data includes wild-type animals as a reference and two different mutants to understand their role during touch sensation: MEC-2(R385H) and UNC-89 knock-out.
DOI: 10.6084/m9.figshare.23916069
title: Supporting Data: Chelating Borohydrides for Lanthanides and Actinides: Structures, Mechanochemistry, and Case Studies with Phosphinodiboranates

description: Supporting computational data for the following publication:T. V. Fetrow, R. Bhowmick, A. J. Achazi, A. V. Blake, F. D. Eckstrom, B. Vlaisavljevich, and S. R. Daly “Chelating Borohydrides for Lanthanides and Actinides: Structures, Mechanochemistry, and Case Studies with Phosphinodiboranates” <i>Inorg. Chem.</i> <b>2020</b>, 59, 48-61.
DOI: 10.6084/m9.figshare.23916069.v1
title: Supporting Data: Chelating Borohydrides for Lanthanides and Actinides: Structures, Mechanochemistry, and Case Studies with Phosphinodiboranates

description: Supporting computational data for the following publication:T. V. Fetrow, R. Bhowmick, A. J. Achazi, A. V. Blake, F. D. Eckstrom, B. Vlaisavljevich, and S. R. Daly “Chelating Borohydrides for Lanthanides and Actinides: Structures, Mechanochemistry, and Case Studies with Phosphinodiboranates” <i>Inorg. Chem.</i> <b>2020</b>, 59, 48-61.
DOI: 10.5281/zenodo.8228933
title: Residential segregation by income in Spanish municipalities

description: These databases contain a set of residential segregation values for several municipalities of Spain. On the basis of data on the income distribution of most municipalities provided by the Instituto Nacional de Estadística for the years 2015-2020, the databases contain the values of the Dissimilarity Index for all cities, towns and villages with two or more census tracts. Each database corresponds to the segregation of two different population groups: the segregation of the population below the poverty line versus the rest of the population; and the segregation of households with income above 200% of the median income versus the rest of the population. Original raw data can be extracted here. The data of these databases was displayed in the website of the author, and the code for creating the databases can be consulted here.