cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14170622.v3
title: Data for Fast photothermal spatial light modulation for quantitative phase imaging at the nanoscale

description: Hadrien ML Robert; Holanová, Kristýna; Bujak, Łukasz; Vala, Milan; Henrichs, Verena; Lánský, Zdeněk; et al. (2021): Data for Fast photothermal spatial light modulation for quantitative phase imaging at the nanoscale. figshare. <br>Dataset. https://doi.org/10.6084/m9.figshare.14170622.v1<br> <br>
DOI: 10.6084/m9.figshare.14170622.v2
title: Data for Fast photothermal spatial light modulation for quantitative phase imaging at the nanoscale

description: Hadrien; Holanová, Kristýna; Bujak, Łukasz; Vala, Milan; Henrichs, Verena; Lánský, Zdeněk; et al. (2021): Data for Fast photothermal spatial light modulation for quantitative phase imaging at the nanoscale. figshare. <br>Dataset. https://doi.org/10.6084/m9.figshare.14170622.v1<br> <br>
DOI: 10.5281/zenodo.4591458
title: NPTEL2020-Indian-English-Speech-Train-part9

description: English Speech Recognition dataset collected from NPTEL videos. For more information, check:<br> https://github.com/AI4Bharat/NPTEL2020-Indian-English-Speech-Dataset
DOI: 10.5281/zenodo.4591457
title: NPTEL2020-Indian-English-Speech-Train-part9

description: English Speech Recognition dataset collected from NPTEL videos. For more information, check:<br> https://github.com/AI4Bharat/NPTEL2020-Indian-English-Speech-Dataset
DOI: 10.6084/m9.figshare.14191268
title: Global patterns and drivers of alpine plant species richness

description: The repository contains:<br>1) Spreadsheet with plot coordinates and regions;2) Longtable format spreadsheet with species lists for each plot used estimate regional species richness;3) Predictors of regional and community species richness;4) RData file containing all the above;4) The R code used to reproduce the main outputs in the article.<br>An on-line interactive map displaying the spatial distribution of the vegetation plots in all regions is available at: <b>https://torpignattaro.users.earthengine.app/view/global-alpine-data</b>
DOI: 10.6084/m9.figshare.14191097
title: Supplementary Material for: Early Adiposity Rebound Predicts Obesity and Adiposity in Youth with Congenital Adrenal Hyperplasia

description: <b><i>Introduction:</i></b> Youth with classical congenital adrenal hyperplasia (CAH) have higher prevalence of cardiometabolic risk factors such as obesity, abdominal adiposity, and hypertension. Patients with CAH also exhibit an earlier adiposity rebound (AR) compared to normative populations. However, the predictive relationship between AR and cardiometabolic risk factors needs to be better understood. <b><i>Methods:</i></b> We performed a retrospective cohort study at a US tertiary pediatric center in youth with classical CAH due to 21-hydroxylase deficiency. AR was determined by cubic polynomial modeling. A subset of participants had fasting analytes, whole-body dual-energy X-ray absorptiometry, and magnetic resonance imaging as adolescents. <b><i>Results:</i></b> In 42 youth with CAH (45.2% female, 54.8% Hispanic, and 90.5% salt-wasting form), the average age at AR was 3.4 ± 1.3 years. AR differed by BMI-z, with youth with obesity having an earlier AR (2.8 ± 1.0 years) compared to lean youth (4.1 ± 1.3 years, <i>p</i> = 0.001). However, AR did not differ by either CAH form or sex. Earlier AR predicted higher BMI-z at 7 and 12 years of age. In addition, earlier AR predicted increased central obesity (as measured by waist circumference, subcutaneous adipose tissue, and trunk fat) and total body fat in adolescence. AR was negatively correlated with bone age, and its relationships with HDL and hypertension were trending towards significance. <b><i>Conclusions:</i></b> AR in youth with classical CAH could serve as a useful clinical marker to identify those patients who are at higher risk for developing cardiometabolic risk factors during childhood and adolescence.
DOI: 10.6084/m9.figshare.14191094
title: Supplementary Material for: Opioid and Other Medication Use and General Health Status in a Cohort of Older Adults

description: <b><i>Objective:</i></b> The aim of this study was to determine whether the use of opioids and other medications in a cohort of older adults was associated with self-reported health status. <b><i>Methods:</i></b> Among participants in the Prostate, Lung, Colorectal, and Ovarian (PLCO) Screening Trial linked to Medicare Part D claims data and answering a quality-of-life questionnaire, we examined the relationship between medication use over a 5-year period and various self-reported health status variables assessed several years later, including overall health status (STATUS) and trouble with activities of daily living (TADL). Multivariable logistic regression was used to estimate odds ratios (ORs) for the health status variables and metrics of medication use, including &gt;60-day use, and for opiates, chronic use, with models controlling for demographics (model I), additionally for chronic conditions (model II), and additionally for other medication use (model III). <b><i>Results:</i></b> The study cohort included 22,844 PLCO participants (56% women, 90% non-Hispanic whites); 4.2% had chronic opioid use and 12.5% used for &gt;60 days. Fair-poor STATUS was reported in 37.9% of participants with chronic opioid use versus 15.0% of participants without (<i>p</i> &lt; 0.001). ORs for chronic opioid use for fair-poor STATUS (compared to good-excellent) were significantly elevated in all models but decreased from model I (OR = 3.6; 95% CI :3.1–4.1) to model II (OR = 2.7; 95% CI :2.3–3.1) to model III (OR = 2.1; 95% CI :1.8–2.5). ORs for TADL were generally similar to those for STATUS. Other drug classes also had significantly elevated model III ORs for fair-poor versus good-excellent STATUS (range 1.1–1.6). <b><i>Conclusion:</i></b> Frequent use of various medication classes correlated with measures of future health status in an elderly population, with opioids having the strongest association. The magnitude of the association decreased after controlling for concurrent chronic conditions but remained elevated. Future research should consider how the use of opioids and other medications impact measures of health-related quality of life.
DOI: 10.6084/m9.figshare.14191232
title: Research data_outsourcing and perceived court reputation

description: This is the data that i used for publication in an international journal. It consists such as interviews recordings and transcriptions, Endnote and NVivo's files.
DOI: 10.6084/m9.figshare.14191232.v1
title: Research data_outsourcing and perceived court reputation

description: This is the data that i used for publication in an international journal. It consists such as interviews recordings and transcriptions, Endnote and NVivo's files.
DOI: 10.6084/m9.figshare.14191112
title: Supplementary Material for: The Evolution of the Neonatal QRS Axis during the First Four Weeks of Life

description: <b><i>Background:</i></b> The QRS axis represents the sum and orientation of the ventricular depolarization. Accurate interpretation of abnormalities in the QRS axis may facilitate early diagnosis of heart disease in newborns. We aimed at describing the evolution of the QRS axis during the first 4 weeks of life and provide reference values from healthy newborns. <b><i>Methods:</i></b> The Copenhagen Baby Heart Study is a prospective general population study that offered cardiac evaluation during the first month of life to all newborns delivered in the Copenhagen area. <b><i>Results:</i></b> Electrocardiograms from 12,317 newborns (52% boys; mean age 12 days) with normal echocardiograms were included. The median QRS axis was 119° at the ages 0–7 days and shifted leftward to 102° at the ages 22–28 days (<i>p</i> &lt; 0.001). We found that girls had a significantly less pronounced right-shifted axis than boys (<i>p</i> &lt; 0.001) and that increasing gestational age (GA) was associated with a more pronounced right-shifted axis (<i>p</i> &lt; 0.05). Infant size did not affect the axis (<i>p</i> &gt; 0.05). Only 0.5% had an axis within the interval 0 to −90° and 1.1% in the interval +240 to +30°. <b><i>Conclusions:</i></b> The QRS axis showed a gradual leftward-shift during the first 4 weeks of life and was affected by sex and GA but unaffected by infant size. Less than 1% of the newborns had a QRS axis between 0 and −90°. This study represents updated reference values, which may facilitate the clinical handling of newborns.
DOI: 10.6084/m9.figshare.14191112.v1
title: Supplementary Material for: The Evolution of the Neonatal QRS Axis during the First Four Weeks of Life

description: <b><i>Background:</i></b> The QRS axis represents the sum and orientation of the ventricular depolarization. Accurate interpretation of abnormalities in the QRS axis may facilitate early diagnosis of heart disease in newborns. We aimed at describing the evolution of the QRS axis during the first 4 weeks of life and provide reference values from healthy newborns. <b><i>Methods:</i></b> The Copenhagen Baby Heart Study is a prospective general population study that offered cardiac evaluation during the first month of life to all newborns delivered in the Copenhagen area. <b><i>Results:</i></b> Electrocardiograms from 12,317 newborns (52% boys; mean age 12 days) with normal echocardiograms were included. The median QRS axis was 119° at the ages 0–7 days and shifted leftward to 102° at the ages 22–28 days (<i>p</i> &lt; 0.001). We found that girls had a significantly less pronounced right-shifted axis than boys (<i>p</i> &lt; 0.001) and that increasing gestational age (GA) was associated with a more pronounced right-shifted axis (<i>p</i> &lt; 0.05). Infant size did not affect the axis (<i>p</i> &gt; 0.05). Only 0.5% had an axis within the interval 0 to −90° and 1.1% in the interval +240 to +30°. <b><i>Conclusions:</i></b> The QRS axis showed a gradual leftward-shift during the first 4 weeks of life and was affected by sex and GA but unaffected by infant size. Less than 1% of the newborns had a QRS axis between 0 and −90°. This study represents updated reference values, which may facilitate the clinical handling of newborns.
DOI: 10.5281/zenodo.4592999
title: Association between EGLN1 haplotype and hypoxia acclimatization in the low altitude male Han Chinese residing at the Qinghai-Tibetan Plateau

description: Association between EGLN1 haplotype and hypoxia acclimatization in the low altitude male Han Chinese residing at the Qinghai-Tibetan Plateau
DOI: 10.13016/cvsh-yz4l
title: Experimental Data from 'Direct Extraction of Signal and Noise Correlations from Two-Photon Calcium Imaging of Ensemble Neuronal Activity'

description: The deposited data set contain: 1) Simulated two-photon imaging data under stimulus-driven and spontaneous conditions 2) Two-photon imaging data from the mouse auditory cortices (Kanold Lab, UMD). Please refer to the readme.txt for further details. These data are used in the article 'Direct Extraction of Signal and Noise Correlations from Two-Photon Calcium Imaging of Ensemble Neuronal Activity' and are disseminated for public use in the spirit of easing reproducibility. The MATLAB implementation of the algorithms used in this work are deposited on GitHub at https://github.com/Anuththara-Rupasinghe/Signal-Noise-Correlation.
DOI: 10.26106/yneb-wd27
title: An insight into the stages of ion leakage during red blood cell storage - concept
DOI: 10.5281/zenodo.4585448
title: VibML

description: The deposited data sets were used to obtain representations<br> of potential energy surfaces (PESs) for eight representative<br> molecules using a neural network of the PhysNet type [1]. The<br> molecules under investigation are H2CO, trans-HONO, HCOOH,<br> CH3OH, CH3CHO, CH3NO2, CH3COOH and CH3CONH2. Reference data calculated at three different levels of quantum<br> chemical theory (MP2/aug-cc-pVTZ, CCSD(T)/aug-cc-pVTZ and<br> CCSD(T)-F12/aug-cc-pVTZ-F12) was used to train machine learning<br> (ML) models. Data sets at the MP2 level of theory were generated<br> for all molecules, at CCSD(T) level they were generated for<br> molecules with less than 7 atoms, and data sets at the CCSD(T)-F12<br> level of theory were generated for molecules with less than 6<br> atoms. The data sets contain different geometries for each<br> molecule generated using the normal mode sampling approach [2]<br> performed at different temperatures. The ab initio calculations<br> were performed using MOLPRO [3]. The performance of the PhysNet is then examined by considering<br> out-of-sample energy and force errors, harmonic frequencies in<br> comparison to explicit ab initio calculations and anharmonic<br> frequencies (obtained from a second order vibrational perturbation<br> theory (VPT2) analysis [4] as implemented in the Gaussian 09<br> suite [5]) in comparison to ab initio VPT2 calculations at the<br> MP2 level as well as to experiment. <br> For more details, see https://arxiv.org/abs/2103.05491 ---------------------------------------------------------------------------------------<br> HOW TO CITE: When using this dataset, please cite the following paper:<br> Käser, S. and Boittier, E. and Upadhyay, M. and Meuwly, M.<br> "MP2 Is Not Good Enough! Transfer Learning ML Models for<br> Accurate VPT2 Frequencies", arXiv:2103.05491. and the digital object identifier (DOI):<br> Käser, S. and Boittier, E. and Upadhyay, M. and Meuwly, M. (2021).<br> VibML. Zenodo. http://doi.org/10.5281/zenodo.4585449 --------------------------------------------------------------------------------------- [1] Unke, O. T.; Meuwly, M. J. Chem. Theory Comput. 2019, 15, 3678–3693<br> [2] Smith, J. S.; Isayev, O.; Roitberg, A. E. Sci. Data 2017, 4, 170193<br> [3] Werner, H.-J.; Knowles, P. J.; Knizia, G.; Manby, F. R.; Schütz, M.; et al. https://www.molpro.net<br> [4] Barone, V.; J. Chem. Phys. 2005, 122, 014108<br> [5] Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.;<br> Scalmani, G.; Barone, V.; Mennucci, B.; Petersson, G. A. et al. Gaussian09 Revision E.01. Gaussian Inc.<br> Wallingford CT 2009
DOI: 10.5281/zenodo.3333456
title: Genetic changes in plateau

description: This document contains all the raw data that needs to be analyzed.
DOI: 10.5281/zenodo.3333455
title: Genetic changes in plateau

description: This document contains all the raw data that needs to be analyzed.
DOI: 10.6084/m9.figshare.12980468
title: Dataset - An exploratory investigation on spatiotemporal parameters, margins of stability, and their interaction in bilateral vestibulopathy.

description: Dataset containing subject characteristics, spatiotemporal parameters and margins of stability of both bilateral vesitbulopathy patients and healthy subjects. Data used for the manuscript "An exploratory investigation on spatiotemporal parameters, margins of stability, and their interaction in bilateral vestibulopathy."
DOI: 10.6084/m9.figshare.12980468.v1
title: Dataset - An exploratory investigation on spatiotemporal parameters, margins of stability, and their interaction in bilateral vestibulopathy.

description: Dataset containing subject characteristics, spatiotemporal parameters and margins of stability of both bilateral vesitbulopathy patients and healthy subjects. Data used for the manuscript "An exploratory investigation on spatiotemporal parameters, margins of stability, and their interaction in bilateral vestibulopathy."
DOI: 10.5281/zenodo.4593008
title: Association between EGLN1 haplotype and hypoxia acclimatization in the low altitude male Han Chinese residing at the Qinghai-Tibetan Plateau

description: Association between EGLN1 haplotype and hypoxia acclimatization in the low altitude male Han Chinese residing at the Qinghai-Tibetan Plateau
DOI: 10.5281/zenodo.4592998
title: Association between EGLN1 haplotype and hypoxia acclimatization in the low altitude male Han Chinese residing at the Qinghai-Tibetan Plateau

description: Association between EGLN1 haplotype and hypoxia acclimatization in the low altitude male Han Chinese residing at the Qinghai-Tibetan Plateau
DOI: 10.5255/ukda-sn-854718
title: Resilient Mangrove Systems: Questionnaires, Participatory GIS, and Focus Groups in Mangrove Socio-ecological Systems in the Red River Delta, Vietnam, 2018-2019

description: These data were generated in two mangrove socio-ecological systems in the north and south of the Red River Delta with different environmental and socio-economic histories. The research included: a) questionnaires (n=300) with households at each site to quantify household economy and adaptive capacity information and explore spatially explicit perceptions about mangrove ecosystem services; b) in-depth livelihood trajectory interviews (n=20) with households representing different adaptive capacity profiles; c) focus group discussions (n=6) to explore plausible future scenarios that impact the mangrove system with households representing different adaptive capacity profiles; and d) in-depth interviews (n=18) with key informants from relevant Ministries, local government departments and civic groups. Datasets can be used as stand-alone, yet richer analysis can be done linking the various sources of information.
DOI: 10.6084/m9.figshare.14135081.v1
title: Supplementary Table S1.xlsx

description: Supplementary table for the article "<b>PLASMA AND URINARY CONCENTRATIONS OF ARACHIDONIC ACID-DERIVED EICOSANOIDS ARE ASSOCIATED WITH DIABETIC KIDNEY DISEASE"</b> in Excli J
DOI: 10.6084/m9.figshare.14191328
title: Supplementary Material for: Temporary Trends in Fever following Transcatheter Aortic Valve Implantation

description: <b><i>Objectives:</i></b> Fever following transcatheter aortic valve implantation (TAVI) is a common phenomenon, attributed mostly to inflammatory response which may impact outcome. Systemic inflammatory response may be triggered by multiple factors, most associated with the TAVI procedure itself. However, there are no data regarding the incidence of fever following TAVI in contemporary era with newer generation devices. Our primary objective was to measure temporal trends in fever incidence and features following TAVI. <b><i>Methods:</i></b> We analyzed a retrospective cohort of 802 consecutive patients who underwent TAVI at our institution between November 2008 and February 2018. We identified and characterized all patients who developed fever (&gt;38.0°C from any cause) within the first 72 h following the procedure and analyzed incidence and characteristics stratified into 3 time frames: 2008–2014, 2014–2016, and 2016–2018. <b><i>Results:</i></b> Following TAVI, 190 (23.7%) patients developed fever (mean age 82.3 ± 5.2 years, 64.2% female). An infectious etiology was evident in only 32.1% of cases. The frequency decreased gradually and significantly across timeframes (32.8, 23.6, and 14.5%, respectively, <i>p</i> &lt; 0.001)<i>.</i> In a multivariate regression analysis, 1st generation CoreValve (HR 1.91; CI 95% 1.2–3.04, <i>p</i> = 0.006) was found to be associated with higher incidence of fever in addition to female gender, vascular complications, transfemoral access, and reduced GFR. <b><i>Conclusions:</i></b> Fever incidence post TAVI decreased significantly throughout the last decade. The higher rate of fever in the early years of TAVI was likely associated with first-generation devices, vascular complications, and reduced GFR.
DOI: 10.6084/m9.figshare.14191328.v1
title: Supplementary Material for: Temporary Trends in Fever following Transcatheter Aortic Valve Implantation

description: <b><i>Objectives:</i></b> Fever following transcatheter aortic valve implantation (TAVI) is a common phenomenon, attributed mostly to inflammatory response which may impact outcome. Systemic inflammatory response may be triggered by multiple factors, most associated with the TAVI procedure itself. However, there are no data regarding the incidence of fever following TAVI in contemporary era with newer generation devices. Our primary objective was to measure temporal trends in fever incidence and features following TAVI. <b><i>Methods:</i></b> We analyzed a retrospective cohort of 802 consecutive patients who underwent TAVI at our institution between November 2008 and February 2018. We identified and characterized all patients who developed fever (&gt;38.0°C from any cause) within the first 72 h following the procedure and analyzed incidence and characteristics stratified into 3 time frames: 2008–2014, 2014–2016, and 2016–2018. <b><i>Results:</i></b> Following TAVI, 190 (23.7%) patients developed fever (mean age 82.3 ± 5.2 years, 64.2% female). An infectious etiology was evident in only 32.1% of cases. The frequency decreased gradually and significantly across timeframes (32.8, 23.6, and 14.5%, respectively, <i>p</i> &lt; 0.001)<i>.</i> In a multivariate regression analysis, 1st generation CoreValve (HR 1.91; CI 95% 1.2–3.04, <i>p</i> = 0.006) was found to be associated with higher incidence of fever in addition to female gender, vascular complications, transfemoral access, and reduced GFR. <b><i>Conclusions:</i></b> Fever incidence post TAVI decreased significantly throughout the last decade. The higher rate of fever in the early years of TAVI was likely associated with first-generation devices, vascular complications, and reduced GFR.
DOI: 10.5281/zenodo.4593016
title: Simulation of integrated speed-accuracy measures when speed-accuracy trade-off is present

description: The uploaded files contain simulation results and some software to generate these results obtained in monte carlo simulations that were designed to test whether and under which conditions integrated speed-accuracy measures are sensitive to speed accuracy trade-off. These simulations are extensively described and discussed in the following publication: Vandierendonck, A. (2021). On the Utility of Integrated Speed-Accuracy Measures when Speed-Accuracy Trade-off is present. Journal of Cognition. DOI: https://doi.org/10.5334/joc.154 The added README contains detailed information on how to use the simulation data and the included software.
description: {"references": ["Vandierendonck, A. (2017). A comparison of methods to combine speed and accuracy measures of performance: A rejoinder on the binning procedure. Behavior Research Methods, 49 (2), 653\u2013673. doi:10.3758/s13428-016-0721-5", "Vandierendonck, A. (2018). Further tests of the utility of integrated speed-accuracy measures in task switching. Journal of Cognition, 1(8), 1\u201316. doi:10.5334/joc.6"]}
DOI: 10.5281/zenodo.4593026
title: connectomicslab/CMTKLIB-data: CMTKLIB-data v1.0

description: Connectome Mapping TooKit LIBrary (CMTKLIB) Data Resources Overview Datalad dataset that stores all data resources of the <code>cmtklib</code> module of Connectome Mapper 3 (https://github.com/connectomicslab/connectomemapper3). <code>colortable_and_gcs</code> stores all data resources (gcs atlas files and colortable) for Lausanne 2008 parcellation <code>diffusion</code> stores gradient tables and ODF direction files used by CMP2 <code>parcellation</code> contains all GRAPHML and Freesurfer Color LUT for Native Freesurfer, Lausanne 2008 and Lausanne 2018 parcellations, with additional annot files for Lausanne 2018 <code>segmentation</code> provides templates for brain extraction (ANTS template IXI and ANTS MICCAI2012 multi-atlas challenge) and for thalamic nuclei segmentation Funding Work supported by the Sinergia SNFNS-170873 Grant. License This dataset is licensed under CC BY 4.0. See license for more details. All trademarks referenced herein are property of their respective holders. Copyright (C) 2009-2021, Hospital Center and University of Lausanne (UNIL-CHUV), Ecole Polytechnique Fédérale de Lausanne (EPFL), Switzerland & Contributors.
DOI: 10.5281/zenodo.4498915
title: Dataset for In-cloud secondary organic aerosol from isoprene

description: Data related to publication by Lamkaddam et al, (2021) in Science Advances.<br> This dataset includes all the data used in the figures from the main text.
DOI: 10.5281/zenodo.4498914
title: Dataset for In-cloud secondary organic aerosol from isoprene

description: Data related to publication by Lamkaddam et al, (2021) in Science Advances.<br> This dataset includes all the data used in the figures from the main text.