cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21233/knjj-8t51
title: Big Creek water chemistry dataset

description: Raw data for the Big Creek water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.knxrjs
title: Occurrence Download

description: A dataset containing 16334 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Meles meles (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((6.293921 10.687131, 45.68316 10.687131, 45.68316 47.864773, 6.293921 47.864773, 6.293921 10.687131))",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2010"
 ]
}

 The dataset includes 16334 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026505-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/zmsq-7m17
title: Gold Run Creek Mammoth [KkVh-VP] vertebrate fauna dataset

description: Raw data for the Gold Run Creek Mammoth [KkVh-VP] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/rjet-kr95
title: Elk Lake pollen dataset

description: Raw data for the Elk Lake pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.mgvxcr
title: Occurrence Download

description: A dataset containing 2972 records in GBIF matching the query:
SELECT
 countrycode,
 publishingcountry,
 COUNT(*) c
FROM
 occurrence
WHERE
 occurrence.datasetkey = '50c9509d-22c7-4a22-a47d-8c48425ef4a7'
GROUP BY
 occurrence.countrycode,
 occurrence.publishingcountry

 The dataset's 2972 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026500-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/1h6c-e326
title: Frederick Lake water chemistry dataset

description: Raw data for the Frederick Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/nvb8-fj64
title: Kipabiskau River ostracode surface sample dataset

description: Raw data for the Kipabiskau River ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/gvgy-wg57
title: Dew Lake pollen dataset

description: Raw data for the Dew Lake pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/grj1-dn37
title: LDDsite2395 water chemistry dataset

description: Raw data for the LDDsite2395 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.phy5u9
title: Occurrence Download

description: A dataset containing 16334 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Meles meles (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((6.293921 10.687131, 45.68316 10.687131, 45.68316 47.864773, 6.293921 47.864773, 6.293921 10.687131))",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2010"
 ]
}

 The dataset includes 16334 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026506-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15389016
title: VIProDesign Dataset

description: Dataset associated with 

VIProDesign: Viral Protein Panel Design for Highly Variable Viruses to Evaluate Immune Responses and Identify Broadly Neutralizing Antibodies paper
DOI: 10.5281/zenodo.15389017
title: VIProDesign Dataset

description: Dataset associated with 

VIProDesign: Viral Protein Panel Design for Highly Variable Viruses to Evaluate Immune Responses and Identify Broadly Neutralizing Antibodies paper
DOI: 10.21233/c8va-ar93
title: Tetonka Lake diatom surface sample dataset

description: Raw data for the Tetonka Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/gezc-rj30
title: Phosphoria Mine IMC. vertebrate fauna dataset

description: Raw data for the Phosphoria Mine IMC. vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15388347
title: Table 1 in Morphological ontogeny of Galumna flagellata Willmann (Acari: Oribatida: Galumnidae)

description: Table 1. Measurements of some morphological characters of juvenile stages and adult of Galumna flagellata (mean measurements of 10 specimens in μm); Nd – not developed.
Morphological charactersLarvaProtonymphDeutonymphTritonymphAdultBody length297345364455520Body width160231241320345Length of prodorsum99105112128148Length of: seta ro4046566074seta le3754596260seta in2935475072seta ex1724343717seta bs4650566396seta c 117172533Lostseta c 2293539400seta c 333404547Lostseta da163911Lostseta dp27389Lostseta la24513150seta lp23410100seta h 12039100seta h 323890seta p 1Nd3890genital openingNd29374549anal opening49759910181
description: Published as part of Seniczak, Anna, Seniczak, Stanisław, Rodríguez-Fernández, Sofía & Ondoño, Emilia Fernandez, 2021, Morphological ontogeny of Galumna flagellata Willmann (Acari: Oribatida: Galumnidae), pp. 207 in International Journal of Acarology 47 (3) on page 207, DOI: 10.1080/01647954.2021.1880478, http://zenodo.org/record/15358783
DOI: 10.5281/zenodo.15388349
title: Table 2 in Morphological ontogeny of Galumna flagellata Willmann (Acari: Oribatida: Galumnidae)

description: Table 2. Ontogeny of leg setae (Roman letters), solenidia and famulus (Greek letters) in Galumna flagellata.
LegTrochanterFemurGenuTibiaTarsusLeg ILarva–d, bv’’(l), σ(l), v’, φ1(ft), (tc), (p), (u), (a), s, (pv), (pl), Ε, ω1Protonymph––––ω2Deutonymph–(l)–φ2–Tritonymphv’––v’’(it)Adult––v’–v’, l’’Leg IILarva–d, bv’’(l), σl’, v’, φ(ft), (tc), (p), (u), (a), s, (pv), ω1Protonymph–––––Deutonymph–(l)–l”ω2Tritonymphv’––v’’(it)Adult––v’––Leg IIILarva–d, ev’l’, σv’, φ(ft), (tc), (p), (u), (a), s, (pv)Protonymph–––––Deutonymphv’l’–l’–Tritonymphl’––v’’(it)Adult–––––Leg IVProtonymph––––ft’’, (p), (u), (pv)Deutonymph–d, ev’dv’, φ(tc), (a), sTritonymphv’–l’l’, v’’–Adult–––––
Note: structures are indicated where they are first added and are present through the rest of ontogeny; pairs of setae in
parentheses, dash indicates no additions.
description: Published as part of Seniczak, Anna, Seniczak, Stanisław, Rodríguez-Fernández, Sofía & Ondoño, Emilia Fernandez, 2021, Morphological ontogeny of Galumna flagellata Willmann (Acari: Oribatida: Galumnidae), pp. 215 in International Journal of Acarology 47 (3) on page 215, DOI: 10.1080/01647954.2021.1880478, http://zenodo.org/record/15358783
DOI: 10.5281/zenodo.15388351
title: Table 3 in Morphological ontogeny of Galumna flagellata Willmann (Acari: Oribatida: Galumnidae)

description: Table 3. Comparison of selected morphological characters of Galumna flagellata, G. alata, G. curvifamulus, G. obvia and G. zachvatkini; Gn – gastronotal.
CharactersG. flagellataG. alata 3G. curvifamulus 2, 3G. obvia 4G. zachvatkini 5Formula of Gn setae12–15–15–15–1011–15–15–15–1012 6–15–15–15–1011–15–15–15–1012–15–15–15–10AdultShape of bsFusiformFusiformClavateFusiformFusiformLength of seta inLongLongShortShortLongLocation of imNot close to A1Close to A1Close to A1Close to A1Not close to A1Median porePresentAbsentPresentAbsentPresentSexual dimorphismIndistinctIndistinctIndistinctIndistinctDistinctJuvenilesShape of bsClavateClavateClavateFusiformClavateSetae of c -seriesOn microscleritesOn microscleritesOn microscleritesOn microsclerites?Humeral organAbsentPresentPresentPresentPresentNymphsLength of seta leAs long as leAs long as leAs long as leShorter than leAs long as leLength of seta inAs long as leAs long as leLonger than leShorter than leShorter than leLength of seta c 2Longer than c 1Longer than c 1Longer than c 1As short as c 1Longer than c 1Length of seta c 3As long as c 2Shorter than c 2Longer than c 2Longer than c 2As long as c 2Most Gn setaeShortShortAlveolarShortShortSetae of p -seriesOn ad -scleriteOn ad -scleriteOn microscleritesOn microscleritesOn ad -scleriteSetae of ad -seriesOn integumentOn microscleritesOn microscleritesOn integument?LarvaLength of seta leAs long as roShorter than roAs long as roAs long as roAs long as roLength of seta inShorter than leLonger than leAs long as leShorter than leShorter than leLength of seta exMedium sizedShortShortMedium sizedMedium sizedLength of seta c 2Longer than c 1Longer than c 1Longer than c 1As short as c 1As long as c 1Length of seta c 3As long as c 2Shorter than c 2As long as c 2Longer than c 2As long as c 2Most Gn setaeMedium sizedShortAlveolarShortMedium sized
1 According to Seniczak et al. (2012), 2 adult according to Ermilov et al. (2017a), 3 juveniles according to Ermilov et al. (2017b), 4 according to Ermilov et al. (2013), 5 according to Grishina (1982), 6 including alveolar h.
description: Published as part of Seniczak, Anna, Seniczak, Stanisław, Rodríguez-Fernández, Sofía & Ondoño, Emilia Fernandez, 2021, Morphological ontogeny of Galumna flagellata Willmann (Acari: Oribatida: Galumnidae), pp. 215 in International Journal of Acarology 47 (3) on page 215, DOI: 10.1080/01647954.2021.1880478, http://zenodo.org/record/15358783
DOI: 10.6084/m9.figshare.28938579
title: Filling in the gaps: Distribution of the puff adder <i>Bitis arietans</i> (Merrem, 1820) in central South Africa and Lesotho – an investigation using mainly social media records and species distribution modelling

description: The puff adder (<i>Bitis arietans</i>) is widely distributed in Africa and south-western Arabia. Most published records for central South Africa and Lesotho are from surveys undertaken nearly 50 years ago, and although a large part of this area is considered well surveyed, existing occurrence records are sparse with several seemingly inexplicable gaps. Here we investigated the value of photographic and videographic records submitted to social media platforms, especially Facebook, as a source of contemporary geographical distribution data for the region. In addition, we used species distribution modelling to investigate areas of apparent absence. Careful screening and follow-up of Facebook records resulted in many high-quality records (85% of 432 records) with an adequate level of locality accuracy for detailed map plotting. Mapped records indicate that <i>B. arietans</i> is currently widespread in Free State Province, with the exception of a large area in the north. New records confirm that this species still occurs in most areas where it was previously recorded, but its known distribution in the far northern (Deneysville to Bothaville) and south-western (Petrusberg to Fauresmith and Smithfield) parts of the province has greatly increased. The filling-up of apparent gaps in distribution is probably primarily a reflection of better sampling coverage (increased availability of photo-recorded snakes) rather than an indication of recent range expansion. Species distribution modelling based on climatic (precipitation and temperature), elevation and land cover data suggested a high likelihood of suitable habitat for <i>B. arietans</i> throughout most of the study area. A notable exception to this was a largely transformed (mostly crop farming) area in the north of the province that currently lacks both social media and literature records, and which yielded a greatly reduced likelihood of suitable habitat. We contend that this citizen science social media approach represents a valuable tool for investigations of contemporary reptile distributions.
DOI: 10.21233/qjra-2t94
title: North 4 testate amoebae surface sample dataset

description: Raw data for the North 4 testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15378470
title: Dataset: Association between Obstructive Sleep Apnea and Left Ventricular Hypertrophy in Elderly Patients at Islamabad Specialized Hospital

description: This dataset contains anonymized clinical data collected from elderly patients diagnosed with Obstructive Sleep Apnea (OSA) and assessed for Left Ventricular Hypertrophy (LVH) at Islamabad Specialized Hospital in 2024. The dataset was used for a research project analyzing the association between OSA and LVH.
DOI: 10.5281/zenodo.15378471
title: Dataset: Association between Obstructive Sleep Apnea and Left Ventricular Hypertrophy in Elderly Patients at Islamabad Specialized Hospital

description: This dataset contains anonymized clinical data collected from elderly patients diagnosed with Obstructive Sleep Apnea (OSA) and assessed for Left Ventricular Hypertrophy (LVH) at Islamabad Specialized Hospital in 2024. The dataset was used for a research project analyzing the association between OSA and LVH.
DOI: 10.15468/dl.4hk3r3
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Mongolia)",
 "TaxonKey is Calligonum junceum (Fisch. & C.A.Mey.) Litv."
 ]
}

 The dataset includes 90 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026507-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/74vb-f729
title: Russel-Tiglia-Egypte pit pollen dataset

description: Raw data for the Russel-Tiglia-Egypte pit pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/wn5s-eb66
title: Mockingbird Canyon vertebrate fauna dataset

description: Raw data for the Mockingbird Canyon vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/r4rm-wy07
title: Listvyanka-bog2 testate amoebae surface sample dataset

description: Raw data for the Listvyanka-bog2 testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/qaxm-qv70
title: Summit Lake pollen surface sample dataset

description: Raw data for the Summit Lake pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/sknx-js68
title: Dumbbell Lake water chemistry dataset

description: Raw data for the Dumbbell Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15389034
title: Supplementary data for: SarcAsM: AI-based multiscale analysis of sarcomere organization and contractility in cardiomyocytes

description: This repository contains the supplementary data for the publication "SarcAsM: AI-based multiscale analysis of sarcomere organization and contractility in cardiomyocytes". More details on samples see publication (https://www.biorxiv.org/content/10.1101/2025.04.29.650605v1). 



Training data set for sarcomere detection (training_data_sarcomeres.zip): Diverse set of fluorescent microscopy images with annotations for Z-bands, M-bands, sarcomere orientation map, sarcomere mask and cell mask. Data sources and details see Supplementary Table 2 of publication.

Training data for ContractionNet (training_data_contractionnet.zip): Simulated and real data time series of contractions, including sarcomere and Z-band motion with ground truth contraction intervals. 

Test images (test_data.zip): Small test data set with diverse images and movies for testing SarcAsM.

Validation data (validation_data.zip): Samples for validation of SarcAsM's ability to detect sarcomeres and measure sarcomere lenghts. For each image, we provide the manually annotated ground truth sarcomere mask and the manually measured sarcomere lengths (list and Fiji ROIs).

Representative movies of drug treatment assays:



data_chronic_drug_treatment.zip: 8-day live-movies (4 h frame interval) of ACTN2-citrine hiPSC-derived cardiomyocytes in 2D culture treated with Mavacamten (0.1µM, 1µM, 10µM, control) after day 3. 

data_acute_drug_treatment.zip: High-speed movies of ACTN2-citrine hiPSC-derived cardiomyocytes on micropatterned soft gel (20 kPa) treated with a small panel of cardiac drugs.
DOI: 10.5281/zenodo.8232837
title: Supplementary data for: SarcAsM: AI-based multiscale analysis of sarcomere organization and contractility in cardiomyocytes

description: This repository contains the supplementary data for the publication "SarcAsM: AI-based multiscale analysis of sarcomere organization and contractility in cardiomyocytes". More details on samples see publication (https://www.biorxiv.org/content/10.1101/2025.04.29.650605v1). 



Training data set for sarcomere detection (training_data_sarcomeres.zip): Diverse set of fluorescent microscopy images with annotations for Z-bands, M-bands, sarcomere orientation map, sarcomere mask and cell mask. Data sources and details see Supplementary Table 2 of publication.

Training data for ContractionNet (training_data_contractionnet.zip): Simulated and real data time series of contractions, including sarcomere and Z-band motion with ground truth contraction intervals. 

Test images (test_data.zip): Small test data set with diverse images and movies for testing SarcAsM.

Validation data (validation_data.zip): Samples for validation of SarcAsM's ability to detect sarcomeres and measure sarcomere lenghts. For each image, we provide the manually annotated ground truth sarcomere mask and the manually measured sarcomere lengths (list and Fiji ROIs).

Representative movies of drug treatment assays:



data_chronic_drug_treatment.zip: 8-day live-movies (4 h frame interval) of ACTN2-citrine hiPSC-derived cardiomyocytes in 2D culture treated with Mavacamten (0.1µM, 1µM, 10µM, control) after day 3. 

data_acute_drug_treatment.zip: High-speed movies of ACTN2-citrine hiPSC-derived cardiomyocytes on micropatterned soft gel (20 kPa) treated with a small panel of cardiac drugs.
DOI: 10.5281/zenodo.8232838
title: Supplementary data for: SarcAsM: AI-based multiscale analysis of sarcomere organization and contractility in cardiomyocytes

description: This repository contains the supplementary data for the publication "SarcAsM: AI-based multiscale analysis of sarcomere organization and contractility in cardiomyocytes". More details on samples see publication (https://www.biorxiv.org/content/10.1101/2025.04.29.650605v1). 



Training data set for sarcomere detection (training_data_sarcomeres.zip): Diverse set of fluorescent microscopy images with annotations for Z-bands, M-bands, sarcomere orientation map, sarcomere mask and cell mask. Data sources and details see Supplementary Table 2 of publication.

Training data for ContractionNet (training_data_contractionnet.zip): Simulated and real data time series of contractions, including sarcomere and Z-band motion with ground truth contraction intervals. 

Test images (test_data.zip): Small test data set with diverse images and movies for testing SarcAsM.

Validation data (validation_data.zip): Samples for validation of SarcAsM's ability to detect sarcomeres and measure sarcomere lenghts. For each image, we provide the manually annotated ground truth sarcomere mask and the manually measured sarcomere lengths (list and Fiji ROIs).

Representative movies of drug treatment assays:



data_chronic_drug_treatment.zip: 8-day live-movies (4 h frame interval) of ACTN2-citrine hiPSC-derived cardiomyocytes in 2D culture treated with Mavacamten (0.1µM, 1µM, 10µM, control) after day 3. 

data_acute_drug_treatment.zip: High-speed movies of ACTN2-citrine hiPSC-derived cardiomyocytes on micropatterned soft gel (20 kPa) treated with a small panel of cardiac drugs.
DOI: 10.21233/a83p-4884
title: West Lake water chemistry dataset

description: Raw data for the West Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/8s9b-1x60
title: LDDsite2220 water chemistry dataset

description: Raw data for the LDDsite2220 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.