cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18402767
title: QUVVAT KOEFFISIENTINI INTELLEKTUAL BOSHQARISH ORQALI ENERGIYA SAMARADORLIGINI OSHIRISH METODLARI

description: Zamonaviy sanoat korxonalarida past quvvat koeffisienti      (cos φ) energiya tizimlarida jiddiy samarasizliklarga olib kelmoqda. Tadqiqotning maqsadi quvvat koeffisientini dinamik sanoat sharoitida yaxshilash uchun intellektual boshqarish metodlarini ishlab chiqish va ularning samaradorligini baholashdan iborat. Ishlab chiqilgan metodologiya Adaptiv Neyron-Bulutli Inferensiya Tizimi (ANFIS) asosidagi boshqaruvchini o‘z ichiga olib, u real vaqt rejimida reaktiv quvvatni optimal boshqarish imkonini beradi. Matlab/Simulink platformasida yaratilgan simulyatsiya modeli yordamida taklif etilgan boshqaruvchi an’anaviy PID boshqaruvchi bilan solishtirildi.
DOI: 10.5281/zenodo.18402768
title: QUVVAT KOEFFISIENTINI INTELLEKTUAL BOSHQARISH ORQALI ENERGIYA SAMARADORLIGINI OSHIRISH METODLARI

description: Zamonaviy sanoat korxonalarida past quvvat koeffisienti      (cos φ) energiya tizimlarida jiddiy samarasizliklarga olib kelmoqda. Tadqiqotning maqsadi quvvat koeffisientini dinamik sanoat sharoitida yaxshilash uchun intellektual boshqarish metodlarini ishlab chiqish va ularning samaradorligini baholashdan iborat. Ishlab chiqilgan metodologiya Adaptiv Neyron-Bulutli Inferensiya Tizimi (ANFIS) asosidagi boshqaruvchini o‘z ichiga olib, u real vaqt rejimida reaktiv quvvatni optimal boshqarish imkonini beradi. Matlab/Simulink platformasida yaratilgan simulyatsiya modeli yordamida taklif etilgan boshqaruvchi an’anaviy PID boshqaruvchi bilan solishtirildi.
DOI: 10.5061/dryad.9s4mw6mmn
title: Finding shortcuts through collective tunnel excavation in a subterranean termite

description: Facilitating efficient resource transfer requires building an optimized
 transportation network that balances cost minimization with benefit
 maximization. For animals that forage for food located remotely,
 optimizing their transportation networks is critically related to
 survival. This process often involves finding and using the shortest route
 to save time and energy. Subterranean termites forage for wood resources
 by excavating underground foraging networks for search and transport.
 Because termites have no prior knowledge of food location during the food
 searching phase, establishment of a short tunnel between the nest and
 feeding site is difficult at the beginning of foraging. Thus, finding a
 short route should logically follow initial food discovery. However, it
 remains elusive as to how subterranean termites find the shortest route
 for food transportation. We simulated different scenarios using
 Coptotermes formosanus by providing different shapes and distances of
 pre-formed tunnels (straight, detour, and detour + twisting arenas) to
 food, where food items were located at a fixed distance from the arena
 entrance. Termites in the straight arena continuously used the pre-formed
 tunnel, showing negligible branching efforts. However, termites in the
 detour and detour + twisting arenas followed the pre-formed tunnel only
 for the initial few hours before excavating many branching tunnels. This
 branching activity ultimately resulted in termites finding shorter
 commuting routes than the pre-formed tunnels. In addition, the shortest
 established routes were widened over time. This study demonstrated that C.
 formosanus could actively alter tunnel networks to minimize the cost in
 food transportation by using short and wide tunnels. 
description: Please see the README document and the accompanying accepted
 articles: Zion Michael, Thomas Chouvenc, Nan-Yao Su and Sang-Bin Lee.
 2023. Finding shortcuts through collective tunnel excavation in a
 subterranean termite. Behavioral Ecology. 
description: R
DOI: 10.5061/dryad.sf7m0cg9w
title: Data for: Population genomics and conservation management of the threatened black-footed tree-rat (Mesembriomys gouldii) in northern Australia

description: Genomic diversity is a fundamental component of Earth’s total biodiversity
 and requires explicit consideration in efforts to conserve biodiversity.
 To conserve genomic diversity, it is necessary to measure its spatial
 distribution and quantify the contribution that any intraspecific
 evolutionary lineages make to overall genomic diversity. Here, we describe
 the range-wide population genomic structure of a threatened Australian
 rodent, the black-footed tree-rat (Mesembriomys gouldii), aiming to
 provide insight into the timing and extent of population declines across a
 large region with a dearth of long-term monitoring data. By estimating
 recent trajectories in effective population sizes at four localities, we
 confirm widespread population decline across the species’ range, but find
 that the population in the peri-urban area of the Darwin region has been
 more stable. Based on current sampling, the Melville Island population
 made the greatest contribution to overall allelic richness of the species,
 and the prioritisation analysis suggested that conservation of the Darwin
 and Cobourg Peninsula populations would be the most cost-effective
 scenario to retain more than 90% of all alleles. Our results broadly
 confirm current sub-specific taxonomy and provide crucial data on the
 spatial distribution of genomic diversity to help prioritise limited
 conservation resources. Along with additional sampling and genomic
 analysis from the far eastern and western edges of the black-footed
 tree-rat distribution, we suggest a range of conservation and research
 priorities that could help improve black-footed tree-rat population
 trajectories at large and fine spatial scales, including the retention and
 expansion of structurally complex habitat patches.
description: We used next-generation sequencing data from remnant populations
 of the threatened black-footed tree-rat (<em>Mesembriomys</em>
 <em>gouldii</em>) to compare patterns of genomic diversity and
 differentiation across the landscape and investigate genomic diversity
 metrics to better understand brush-tailed rabbit-rat population genomic
 structure. We also ran a quantitative prioritisation analysis to determine
 which populations are the most cost-effective to conserve for the
 retention of genomic diversity. Detailed methods are provided in the
 published manuscript. All bioinformatic and R scripts
 are provided as part of the dataset. All relevant input and output files
 for ANGSD, SNeP and STACKS, as well as filtered genotypes, are
 provided.
description: Software used for this publication/dataset include the following.
 However, many different software programs can be used to open the files
 and run the same or similar analyses. R
 STACKS BWA
 SAMTOOLS ANGSD
 SNeP PLINK
 TreeMix MARXAN
DOI: 10.13140/rg.2.2.16308.51840
title: Justicia_Fractal_Blindaje.pdf
DOI: 10.5061/dryad.kwh70rz7w
title: Spatial genetic differentiation correlates with species assemblage turnover across tropical reef fish lineages

description: Aim: Evaluating the similarity of diversity patterns across micro- to
 macroevolutionary scales in natural communities, such as species-genetic
 diversity correlations (SGDC), may inform on processes shaping community
 assembly. However, whether SGDCs not only hold across communities but also
 across lineages has never been explored so far. Here we investigated SGDCs
 across co-distributed taxa for different spatial components (α, β, γ), and
 formally tested the influence of dispersal traits on β SGDCs. Location:
 Western Indian Ocean Time period: 2016–2017 Major taxa studied: Tropical
 reef fish species with contrasting dispersal traits Methods: Using
 ddRADseq single nucleotide polymorphism (SNP) data for 20 tropical reef
 fishes and distribution data of 2,446 species belonging to 12 families, we
 analysed the correlations between within-species genetic diversity and
 within-family species diversity (i.e., lineage diversity) for the three
 spatial components (α, β, γ SGDCs). We then related the strength of
 β-SGDCs per species to proxies of larval dispersal abilities. Results: We
 detected positive and significant lineage-based SGDC only for the β
 component, i.e., the families showing the greatest level of species
 turnover among sites contains the species with the greatest levels of
 genetic differentiation. We showed that the Monsoon drift mainly explained
 the β diversity patterns at both intraspecific and interspecific levels.
 Higher β-SGDCs were found for species with short pelagic larval duration
 and weak larval swimming capacity. Main conclusions: Our study reveals a
 strong correlation between genetic and species β diversity, a result
 explained by the presence of a ‘soft’ barrier and mediated by larval
 dispersal processes. This suggests that vicariance and dispersal
 limitation are major processes shaping β-diversity patterns from
 microevolutionary to macroevolutionary scales in tropical reef fishes.
description: Data set used to perform analyses in
 "Spatial genetic differentiation correlates with species assemblage
 turnover across tropical reef fish lineages" (Vilcot et al.,
 2023) R codes for this study are available
 on GitHub: https://github.com/mvilcot/reefish_WIO_SGDCs
DOI: 10.5061/dryad.76hdr7t1k
title: Monthly temperature and salinity data for global coastal ports

description: This dataset contains a list of 7,339 global coastal ports, with
 monthly sea surface temperature and salinity data from 1955 to 2017.
 Monthly temperature and salinity data were sourced from the U.S. National
 Oceanic and Atmospheric Administration World Ocean Atlas. This port
 dataset was sourced from Bailey et al. (2020).
description: The dataset is a compilation of two datasets: (i) a list of 8,392
 global shipping ports with positional coordinates (latitude and longitude)
 (originally compiled by Keller et al, 2011 and updated by Bailey et al,
 2020) and (ii) monthly sea surface temperature and salinity data
 downloaded from the World Ocean Atlas 2018 (https://www.ncei.noaa.gov/access/world-ocean-atlas-2018/), available from the National Centers for Environmental Information (NCEI) as the average of six decadal means from 1955 to 2017 following systematic data quality control techniques (Locarnini et al, 2019; Zweng et al, 2019). The environmental variable values were available at a one-degree grid resolution (i.e., points spaced at approximately 111 km) from January to December. The shipping port locations were matched with sea surface environmental variables based on closest geodesic distance. As the distance for some inland ports to the nearest environmental data point was greater than 2 grid cells (greater than 222 km), the analysis was restricted to coastal ports best represented by the data (all ports farther than 2 grid cells from the nearest environmental data point were excluded, e.g., Laurentian Great Lakes’ ports). Sea surface values were missing for 0.5%–3% of the 31,000-33,000 environmental data points. Since the percentage of missing values was relatively small, these points were dropped and the closest match procedure was rerun.  Bailey S. A., Bradie, J. N., Ogilvie D., & Mudroch, P. (2020) Global port environmental data used for environmental distance calculations. Dryad, Dataset https://doi.org/10.5061/dryad.69p8cz906 Keller, R. P., Drake, J. M., Drew, M. B., & Lodge, D. M. (2011). Linking environmental conditions and ship movements to estimate invasive species transport across the global shipping network. Diversity and Distributions, 17(1), 93-102. https://doi.org/10.1111/j.1472-4642.2010.00696.x  Locarnini R, Mishonov A, Baranova O, et al (2019) World ocean atlas 2018, volume 1: Temperature. NOAA Atlas NESDIS 81 p 52 Zweng M, Reagan J, Seidov D, et al (2019) World ocean atlas 2018, volume 2: Salinity. NOAA Atlas NESDIS 82 p 50
description: See the ReadMe file for details on the
 temperature and salinity data sources.
DOI: 10.17632/jkdfmt2vx5.1
title: TS-ABS DATA-28J-834

description: This dataset has been used for TS-ABS in "A Two-Stage Adaptive Beam Search Algorithm for the Hybrid-Class Timetabling Problem".
DOI: 10.5061/dryad.m63xsj46h
title: Population genomic analysis of an emerging pathogen Lonsdalea quercina affecting various species of oaks in western North America

description: Previously unrecognized diseases continue to threaten the health of forest
 ecosystems globally. Understanding processes leading to disease emergence
 is important for effective disease management and prevention of future
 epidemics. Utilizing whole genome sequencing, we studied the phylogenetic
 relationship and within diversity of two populations of the bacterial oak
 pathogen Lonsdalea quercina from western North America
 (Colorado and California) and compared these populations to
 other Lonsdalea species found worldwide. Phylogenetic analysis
 separated Colorado and California populations into two well-supported
 clades within the genus Lonsdalea, with an average nucleotide
 identity between them near species boundaries (95.31%) for bacteria,
 suggesting long isolation. Populations comprise distinct patterns in
 genetic structure and distribution. Genotypes collected from different
 host species and habitats were randomly distributed within the California
 cluster, while most Colorado isolates from introduced planted trees were
 distinct from isolates collected from a natural stand of CO
 native Q. gambelii, indicating the presence of cryptic population
 structure. The distribution of clones in California varied, while Colorado
 clones were always collected from neighboring trees. Despite its recent
 emergence, the Colorado population had higher nucleotide diversity,
 possibly due to migrants moving with nursery stock. Overall results
 suggest independent pathogen emergence in two states likely driven by
 changes in host-microbe interactions due to ecosystem conditions changing.
 To our knowledge, this is the first study on L.
 quercina population structure. Further studies are warranted to
 understand evolutionary relationships among L.
 quercina populations from different areas, including the native
 habitat of red oak in northeastern USA.
description: The pangenome analyses were carried out with Roary pipeline
 v.3.13.0 with gff3 input files from Prokka annotation. Three datasets of
 core genes were used for further analyses that are described in detail in
 the main text of the manuscript.
DOI: 10.17632/f48zwpjm6n
title: IODP-CYT-geochemical-data

description: The geochemical data generated in the study entitled “Geochemical Analysis of Diachronous V-Shaped Ridges and Troughs Flanking the Reykjanes Ridge South of Iceland.”
DOI: 10.5061/dryad.44j0zpcj8
title: Long-term responses to large-scale disturbances: Spatiotemporal variation in gastropod populations and communities

description: The Anthropocene is characterized by complex, primarily human-generated,
 disturbance regimes that include combinations of long-term press (e.g.
 climate change, pollution) and episodic pulse (e.g. cyclonic storms,
 floods, wildfires, land use change) disturbances. Within any regime,
 disturbances occur at multiple spatial and temporal scales, creating
 complex and varied interactions that influence spatiotemporal dynamics in
 the abundance, distribution, and biodiversity of organisms. Moreover,
 responses to disturbance are context-dependent, with the legacies of
 previous disturbances affecting responses to ensuing perturbations. We use
 three decades of annual data to evaluate the effects of repeated pulse
 disturbances and global warming on gastropod populations and communities
 in Puerto Rico at multiple spatial scales. More specifically, we quantify
 (1) the relative importance of large-scale and small-scale aspects of
 disturbance on variation in abundance, biodiversity, and species
 composition; and (2) the spatial scales at which populations and
 communities integrate information in the spatially heterogenous
 environments created by disturbances. Gastropods do not exhibit consistent
 decreases in abundance or biodiversity in association with global warming:
 abundance for many species has increased over time and species richness
 does not evince a temporal trend. Nonetheless, gastropods are sensitive to
 hurricane severity, spatial environmental variation, and successional
 trajectories of the flora. In addition, they exhibit context-dependent
 (i.e. legacy effects) responses that are scale-dependent. The Puerto Rican
 biota has evolved in a disturbance-mediated system. This historical
 exposure to repeated, severe hurricane-induced disturbances has imbued the
 biota with high resistance and resilience to the current disturbance
 regime, resulting in an ability to persist or thrive under current
 environmental conditions. Nonetheless, these ecosystems may yet be
 threatened by worsening direct and indirect effects of climate change. In
 particular, more frequent and severe hurricanes may prevent the
 establishment of closed-canopy forests, negatively impacting populations
 and communities that rely on these habitats.
description: See main paper as well as links in README file for details on
 data collection.
description: The data files can be opened with excel or any program that can
 read csv formats.
DOI: 10.17632/f48zwpjm6n.1
title: IODP-CYT-geochemical-data

description: The geochemical data generated in the study entitled “Geochemical Analysis of Diachronous V-Shaped Ridges and Troughs Flanking the Reykjanes Ridge South of Iceland.”
DOI: 10.15468/dl.hzu7pz
title: Occurrence Download

description: A dataset containing 170458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Indonesia",
 "GadmGid is one of (IDN.7_1, IDN.9.5_1)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 170458 records from 275 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002755-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zybcv8
title: Occurrence Download

description: A dataset containing 1106767 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium, Germany, Netherlands)",
 "TaxonKey is one of (Ondatra zibethicus, Myocastor coypus)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1106767 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010054-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v9x8gf
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyprinus carpio",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1800",
 "Year is less than or equal to 1804"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010092-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5mawpg
title: Occurrence Download

description: A dataset containing 909 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Madia sativa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 909 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010091-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ec4gnt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Propraopus punctatus"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010093-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rrm6cp
title: Occurrence Download

description: A dataset containing 33072 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lactarius rufus"
 ]
}

 The dataset includes 33072 records from 323 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010094-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umpwjt
title: Occurrence Download

description: A dataset containing 195 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "TaxonKey is Larimichthys crocea"
 ]
}

 The dataset includes 195 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010095-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tddpqa
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyprinus carpio",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1805",
 "Year is less than or equal to 1809"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010096-260120142942310/datasets/export for details.
DOI: 10.15468/dl.9v6p5z
title: Occurrence Download

description: A dataset containing 24094 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lactarius torminosus"
 ]
}

 The dataset includes 24094 records from 342 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010098-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fpcmkx
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mairia purpurata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 16 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010097-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14608131
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.wpg4sv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyprinus carpio",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1810",
 "Year is less than or equal to 1814"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010099-260120142942310/datasets/export for details.