cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7294/25438624
title: Validity and reliability of a new whole room indirect calorimeter to assess metabolic response to small calorie loads

description: To provide an overview of our whole room indirect calorimeter (WRIC), demonstrate validity and reliability of our WRIC, and explore a novel application of Bayesian hierarchical modeling to assess responses to small carbohydrate loads.Seven gas infusion studies were performed using a gas blender and profiles designed to mimic resting and postprandial metabolic events to assess WRIC validity. In a crossover design, 16 participants underwent fasting and postprandial measurements, during which they consumed a 75-kcal drink containing sucrose, dextrose, or fructose. Linear mixed effects models were used to compare resting and postprandial metabolic rate (MR) and carbohydrate oxidation. Bayesian Hierarchical Modeling was also used to model postprandial carbohydrate oxidation trajectories for each participant and condition.Mean total error in infusions were 1.270.67% and 0.420.70% for VO<sub>2</sub> and VCO<sub>2</sub> respectively, indicating a high level of validity. Mean resting MR was similar across conditions (=1.050.03 kcal/min, <i>p</i>=0.82, ICC: 0.91). While MR increased similarly among all conditions (~13%, <i>p</i>=0.29), postprandial carbohydrate oxidation parameters were significantly lower for dextrose compared with sucrose or fructose.Here, we provide evidence of validation of our WRIC and a novel application of statistical methods useful for research using WRIC.
DOI: 10.7294/25438624.v1
title: Validity and reliability of a new whole room indirect calorimeter to assess metabolic response to small calorie loads

description: To provide an overview of our whole room indirect calorimeter (WRIC), demonstrate validity and reliability of our WRIC, and explore a novel application of Bayesian hierarchical modeling to assess responses to small carbohydrate loads.Seven gas infusion studies were performed using a gas blender and profiles designed to mimic resting and postprandial metabolic events to assess WRIC validity. In a crossover design, 16 participants underwent fasting and postprandial measurements, during which they consumed a 75-kcal drink containing sucrose, dextrose, or fructose. Linear mixed effects models were used to compare resting and postprandial metabolic rate (MR) and carbohydrate oxidation. Bayesian Hierarchical Modeling was also used to model postprandial carbohydrate oxidation trajectories for each participant and condition.Mean total error in infusions were 1.270.67% and 0.420.70% for VO<sub>2</sub> and VCO<sub>2</sub> respectively, indicating a high level of validity. Mean resting MR was similar across conditions (=1.050.03 kcal/min, <i>p</i>=0.82, ICC: 0.91). While MR increased similarly among all conditions (~13%, <i>p</i>=0.29), postprandial carbohydrate oxidation parameters were significantly lower for dextrose compared with sucrose or fructose.Here, we provide evidence of validation of our WRIC and a novel application of statistical methods useful for research using WRIC.
DOI: 10.6084/m9.figshare.25152923
title: Supplementary files: hubungan antara peningkatan kadar kalsium dan rasio kalsium – fosfat terhadap risiko peritonitis pada pasien continuous ambulatory peritoneal dialysis

description: Supplementary files: hubungan antara peningkatan kadar kalsium dan rasio kalsium – fosfat terhadap risiko peritonitis pada pasien continuous ambulatory peritoneal dialysis:Supp Gambar 1: Ethical clearanceSupp Gambar 2: Perhitungan sampel penelitianSupp Tabel 1: STROBE statementSupp Tabel 2: Hasil uji normalitasSupp Tabel 3: Raw dataSupp Tabel 4: Analisis data karakteristik dasar sampel penelitianSupp Tabel 5: Hasil analisis outcome utama
DOI: 10.6084/m9.figshare.25152923.v2
title: Supplementary files: hubungan antara peningkatan kadar kalsium dan rasio kalsium – fosfat terhadap risiko peritonitis pada pasien continuous ambulatory peritoneal dialysis

description: Supplementary files: hubungan antara peningkatan kadar kalsium dan rasio kalsium – fosfat terhadap risiko peritonitis pada pasien continuous ambulatory peritoneal dialysis:Supp Gambar 1: Ethical clearanceSupp Gambar 2: Perhitungan sampel penelitianSupp Tabel 1: STROBE statementSupp Tabel 2: Hasil uji normalitasSupp Tabel 3: Raw dataSupp Tabel 4: Analisis data karakteristik dasar sampel penelitianSupp Tabel 5: Hasil analisis outcome utama
DOI: 10.6084/m9.figshare.25152923.v1
title: Supplementary files: hubungan antara peningkatan kadar kalsium dan rasio kalsium – fosfat terhadap risiko peritonitis pada pasien continuous ambulatory peritoneal dialysis

description: Supplementary files: hubungan antara peningkatan kadar kalsium dan rasio kalsium – fosfat terhadap risiko peritonitis pada pasien continuous ambulatory peritoneal dialysis:Supp Gambar 1: Ethical clearanceSupp Gambar 2: Perhitungan sampel penelitianSupp Tabel 1: STROBE statementSupp Tabel 2: Hasil uji normalitasSupp Tabel 3: Raw dataSupp Tabel 4: Analisis data karakteristik dasar sampel penelitianSupp Tabel 5: Hasil analisis outcome utama
DOI: 10.5281/zenodo.10810013
title: IODP Expedition 378 Sample report

description: Report includes detailed information about samples taken for testing: location/depth, type/form factor, test, request number, and database identifier.
DOI: 10.5281/zenodo.10810014
title: IODP Expedition 378 Sample report

description: Report includes detailed information about samples taken for testing: location/depth, type/form factor, test, request number, and database identifier.
DOI: 10.6084/m9.figshare.25403698.v3
title: Data from: Pre-Failure Operational Anomalies of the Kakhovka Dam Revealed by Satellite Data

description: Qing Yang, Xinyi Shen, Kang He, Qingyuan Zhang, Sean Helfrich, William Straka III, Josef M. Kellndorfer, Emmanouil N. AnagnostouAbstract:On June 6, 2023, the Kakhovka Dam in Ukraine experienced a catastrophic breach that led to the loss of life and substantial economic values. Prior to the breach, the supporting structures downstream of the spillway had shown signs of being compromised. Here, we use multi-source satellite data, meteorological reanalysis, and dam design criteria to document the dam’s pre-failure condition. We find that anomalous operation of the Kakhovka dam began in November 2022, following the destruction of a bridge segment, which led to persistent overtopping from late April 2023 up to the breach, contributing to the erosion of the spillway foundation. Moreover, our findings also highlight safety and risk-reduction measures pivotal in avoiding such scenarios. To help prevent future disasters, we advocate for greater transparency in the design parameters of key water structures to enable risk management, and conclude that remote sensing technology can help ensuring water infrastructure safety.Data repository corresponding to: yang2473@uwm.eduThis repository contains underlying data and code for the main manuscript figures. Data for Figure 2 is from PlanetScope. Other raw data source are also concluded as follows:The Sentinel-2 and Landsat images used in this study are accessible at https://www.sentinel-hub.com/index.html. The PlanetScope images are obtained through https://www.planet.com/. The Sentinel-1 images were acquired from https://asf.alaska.edu/. The reservoir water levels can be found at https://ipad.fas.usda.gov/cropexplorer/global_reservoir/. The GloFAS-ERA5 river discharge reanalysis data are available at https://cds.climate.copernicus.eu/cdsapp#!/dataset/cems-glofas-historical?tab=overview.
DOI: 10.15139/s3/xjpcxh
title: Survey data

description: Survey questions (administered via Qualtrics) and response data for Phase 1 and 2. Phase 1: 4/8/2020-8/26/2020 Phase 2: 11/2/2020-6/8/2021
DOI: 10.5281/zenodo.10607733
title: Raw k-space data for free-breathing diffusion weighted sequence
DOI: 10.5281/zenodo.10607734
title: Raw k-space data for free-breathing diffusion weighted sequence
DOI: 10.6084/m9.figshare.25447156
title: <b>Prevalence of Apical Periodontitis and Association with Various Systemic Medical </b><b>Diseases in Imam Abdul Rahman Bin Faisal University Dental Hospital: A Retrospective Study.</b>

description: <b>Objectives: </b>Apical periodontitis (AP) is a common dental condition that affects the root apex of a tooth and the surrounding tissues. The prevalence of apical periodontitis and its association with various systemic medical diseases were studied at the Imam Abdul Rahman Bin Faisal University Dental Hospital in the period from January 2021 to January 2022. <b>Methods: </b>In this retrospective cross-sectional study, the age, sex, smoking habits, and systemic medical condition of 850 subjects who were diagnosed with Apical Periodontitis either primary or secondary were recorded and analysed. One-way ANOVA test was used to assess the association between type of AP and number of old root canal treatments, while Chi-Square test/Fisher Exact test were used to assess the prevalence of apical periodontitis with the various systemic diseases. Logistic regression analysis was used to evaluate the predictors for AP. P-value equal to or below 0.05 indicated statistical significance.<b> Results: </b>Among 850 subjects, apical periodontitis was prevalent in 56% with mean age of 30.349+14.01, 56% in males, 84% were smoker, and 59% with systemic diseases. The prevalence of AP is significantly higher in the participants with the mean age of 30 years old (P=0.008) and among smokers’ participants (P=0.035). Primary AP was found significantly higher in the age group (18-25) while the secondary AP was significantly higher in the age group (26-35), with p=0.006, p=0.036 respectively. While participants with the age group (26-35) showed the highest number of (p=0.001) compared with the other age groups. Moreover, the prevalence of apical periodontitis (AP) in association with various systemic diseases ranged from highest to lowest is as follows: diabetes mellitus, hypertension, thyroid disorders, rheumatoid arthritis, blood disorders, lung diseases, heart diseases, GIT diseases, neurological disorders, and others with prevalence of (7.7%, 6.8%, 6%, 4.1%, 4%, 2.7%, 1%, 0.7%, 0.5%, 0.5% respectively). All the systemic diseases did not show significant association with AP except for the blood disorders that shows significance with (p=0.005) and where patients with blood disorders are more prone to develop AP than healthy one (OR=2.812). <b>Conclusion</b>: The study provided insights into the epidemiological prevalence of apical periodontitis and its probable association with age, gender, smoking habits, and various systemic medical diseases. Blood disorders showed significant association with the prevalence of AP. The findings of this study can aid in developing effective preventive and treatment strategies for apical periodontitis and its associated systemic diseases to alleviate the preventive initiatives and decrease the burden of diseases in populations.
DOI: 10.6084/m9.figshare.25447156.v1
title: <b>Prevalence of Apical Periodontitis and Association with Various Systemic Medical </b><b>Diseases in Imam Abdul Rahman Bin Faisal University Dental Hospital: A Retrospective Study.</b>

description: <b>Objectives: </b>Apical periodontitis (AP) is a common dental condition that affects the root apex of a tooth and the surrounding tissues. The prevalence of apical periodontitis and its association with various systemic medical diseases were studied at the Imam Abdul Rahman Bin Faisal University Dental Hospital in the period from January 2021 to January 2022. <b>Methods: </b>In this retrospective cross-sectional study, the age, sex, smoking habits, and systemic medical condition of 850 subjects who were diagnosed with Apical Periodontitis either primary or secondary were recorded and analysed. One-way ANOVA test was used to assess the association between type of AP and number of old root canal treatments, while Chi-Square test/Fisher Exact test were used to assess the prevalence of apical periodontitis with the various systemic diseases. Logistic regression analysis was used to evaluate the predictors for AP. P-value equal to or below 0.05 indicated statistical significance.<b> Results: </b>Among 850 subjects, apical periodontitis was prevalent in 56% with mean age of 30.349+14.01, 56% in males, 84% were smoker, and 59% with systemic diseases. The prevalence of AP is significantly higher in the participants with the mean age of 30 years old (P=0.008) and among smokers’ participants (P=0.035). Primary AP was found significantly higher in the age group (18-25) while the secondary AP was significantly higher in the age group (26-35), with p=0.006, p=0.036 respectively. While participants with the age group (26-35) showed the highest number of (p=0.001) compared with the other age groups. Moreover, the prevalence of apical periodontitis (AP) in association with various systemic diseases ranged from highest to lowest is as follows: diabetes mellitus, hypertension, thyroid disorders, rheumatoid arthritis, blood disorders, lung diseases, heart diseases, GIT diseases, neurological disorders, and others with prevalence of (7.7%, 6.8%, 6%, 4.1%, 4%, 2.7%, 1%, 0.7%, 0.5%, 0.5% respectively). All the systemic diseases did not show significant association with AP except for the blood disorders that shows significance with (p=0.005) and where patients with blood disorders are more prone to develop AP than healthy one (OR=2.812). <b>Conclusion</b>: The study provided insights into the epidemiological prevalence of apical periodontitis and its probable association with age, gender, smoking habits, and various systemic medical diseases. Blood disorders showed significant association with the prevalence of AP. The findings of this study can aid in developing effective preventive and treatment strategies for apical periodontitis and its associated systemic diseases to alleviate the preventive initiatives and decrease the burden of diseases in populations.
DOI: 10.25390/caryinstitute.24680847
title: Supplementary file 4 - Lendino et al.

description: This spreadsheet contains the results of a structured literature review on zoonotic New World arenaviruses. Each row of the table contains information regarding one of the 97 papers that was retained after all of our filtering steps. For each paper, we present the title (Title Primary), journal title (Periodical Full), authors (Authors, Primary), DOI/PubMed ID (DOI), year of publication (Pub Year), journal volume (Volume), journal issue (Issue), and the location of the first page of the article (Start Page). In the case that a DOI was not available, we used the PubMed ID (stylized as PMID: ###) if it existed. If neither were available, this information was left as an N/A.
DOI: 10.25390/caryinstitute.24680847.v1
title: Supplementary file 4 - Lendino et al.

description: This spreadsheet contains the results of a structured literature review on zoonotic New World arenaviruses. Each row of the table contains information regarding one of the 97 papers that was retained after all of our filtering steps. For each paper, we present the title (Title Primary), journal title (Periodical Full), authors (Authors, Primary), DOI/PubMed ID (DOI), year of publication (Pub Year), journal volume (Volume), journal issue (Issue), and the location of the first page of the article (Start Page). In the case that a DOI was not available, we used the PubMed ID (stylized as PMID: ###) if it existed. If neither were available, this information was left as an N/A.
DOI: 10.25390/caryinstitute.25438666
title: Supplementary file 3 - Lendino et al.

description: A spreadsheet containing information on species associated with the mammarenaviruses mentioned in our review. Each row represents a particular species that is associated with a particular virus. For each row, we show the species name (species), the disease the virus causes (disease), the virus name (virus), the country the association was documented in (country), the DOI or PubMed ID of the article (DOI), the type of evidence for the association (evidence, the options are PCR, serosurvey, or other), further information on the evidence (evidence_notes), where the animal was located (source, options are wild or captive), and further notes on the record (checked).
DOI: 10.25390/caryinstitute.25438666.v1
title: Supplementary file 3 - Lendino et al.

description: A spreadsheet containing information on species associated with the mammarenaviruses mentioned in our review. Each row represents a particular species that is associated with a particular virus. For each row, we show the species name (species), the disease the virus causes (disease), the virus name (virus), the country the association was documented in (country), the DOI or PubMed ID of the article (DOI), the type of evidence for the association (evidence, the options are PCR, serosurvey, or other), further information on the evidence (evidence_notes), where the animal was located (source, options are wild or captive), and further notes on the record (checked).
DOI: 10.5281/zenodo.10807741
title: Point Cloud Acquired by Gocator 3210 for 3D Study
DOI: 10.5281/zenodo.10807742
title: Point Cloud Acquired by Gocator 3210 for 3D Study
DOI: 10.21966/rr8v-6y52
title: Fatty acids of particulate matter collected from 2015 to 2018 near Quadra Island, British Columbia, Canada
title: Acides gras des particules collectés de 2015 à 2018 près de l'île Quadra, Colombie-Britannique, Canada

description: This dataset presents fatty acids of particulate organic matter collected from station QU39 from 2015 to 2018. The first sample collection on March 13, 2015 was done at Hakai Institute station QU24 and all subsequent collections were done at the nearby QU39. Water for POM fatty acid analysis was collected from multiple depths in the 30 m surface layer and combined for analysis resulting in one measurement per sampling date. For each sample, approximately 10 L of seawater total were filtered on to previously combusted GF/F filters. Fatty acids were analyzed at the Fisheries and Oceans Canada (DFO) Pacific Science Enterprise Centre as fatty acid methyl esters, separated using an Agilent CP-Sil 88 column, and quantified with a gas chromatograph (SCION 436) equipped with a flame ionization detector.  

Detailed information on methods are available in McLaskey et al. in prep.
description: Ce jeu de données présente les acides gras de la matière organique particulaire collectés à la station QU39 de 2015 à 2018. Le premier prélèvement d'échantillons le 13 mars 2015 a été effectué à la station QU24 de l'Institut Hakai et toutes les collectes subséquentes ont été effectuées à la station QU39 située à proximité. L'eau pour l'analyse des acides gras POM a été prélevée à plusieurs profondeurs dans la couche superficielle de 30 m et combinée pour l'analyse, ce qui a donné lieu à une mesure par date d'échantillonnage. Pour chaque échantillon, environ 10 L d'eau de mer totale ont été filtrés sur des filtres GF/F précédemment brûlés. Les acides gras ont été analysés au Pacific Science Enterprise Centre de Pêches et Océans Canada (MPO) sous forme d'esters méthyliques d'acides gras, séparés à l'aide d'une colonne Agilent Cp-Sil 88 et quantifiés à l'aide d'un chromatographe en phase gazeuse (SCION 436) équipé d'un détecteur à ionisation de flamme. 

Des informations détaillées sur les méthodes sont disponibles dans McLaskey et al. in prep.
DOI: 10.5281/zenodo.10338686
title: Rules of River Avulsion Supplementary Data Files

description: This dataset contains the data gathered and analyzed for the rules of river avulsion manuscript
DOI: 10.5281/zenodo.10416787
title: Rules of River Avulsion Supplementary Data Files

description: This dataset contains the data gathered and analyzed for the rules of river avulsion manuscript.

CHANGELOG:

BUG FIX: Updated a few avulsion foldernames/filenames that didn't match the supplementary tables (eg. "BETSI" instead of "BETSIBOKA_2004"), which threw errors in the visualization routines
DOI: 10.5281/zenodo.10845729
title: Rules of River Avulsion Supplementary Data Files

description: This dataset contains the data gathered and analyzed for the rules of river avulsion manuscript.

CHANGELOG:

0.0.2: BUG FIX: Updated a few avulsion foldernames/filenames that didn't match the supplementary tables (eg. "BETSI" instead of "BETSIBOKA_2004"), which threw errors in the visualization routines

0.0.3: Changed plotting code for better visualization, added the correct examples for Fig. 4 as some were changed during revision. updated data names and measurements for A018, A002, B4, G9 (n=4, 1 datapoint each, cross sections were extended further away from the channel to capture the full range of near-channel topography)
DOI: 10.6084/m9.figshare.25403698
title: Data and code from: Pre-Failure Operational Anomalies of the Kakhovka Dam Revealed by Satellite Data

description: Qing Yang, Xinyi Shen, Kang He, Qingyuan Zhang, Sean Helfrich, William Straka III, Josef M. Kellndorfer, Emmanouil N. AnagnostouAbstract:On June 6, 2023, the Kakhovka Dam in Ukraine experienced a catastrophic breach that led to the loss of life and substantial economic values. Prior to the breach, the supporting structures downstream of the spillway had shown signs of being compromised. Here, we use multi-source satellite data, meteorological reanalysis, and dam design criteria to document the dam’s pre-failure condition. We find that anomalous operation of the Kakhovka dam began in November 2022, following the destruction of a bridge segment, which led to persistent overtopping from late April 2023 up to the breach, contributing to the erosion of the spillway foundation. Moreover, our findings also highlight safety and risk-reduction measures pivotal in avoiding such scenarios. To help prevent future disasters, we advocate for greater transparency in the design parameters of key water structures to enable risk management, and conclude that remote sensing technology can help ensuring water infrastructure safety.Data repository corresponding to: yang2473@uwm.eduThis repository contains underlying data and code for the main manuscript figures. Data for Figure 2 is from PlanetScope. Other raw data source are also concluded as follows:The Sentinel-2 and Landsat images used in this study are accessible at https://www.sentinel-hub.com/index.html. The PlanetScope images are obtained through https://www.planet.com/. The Sentinel-1 images were acquired from https://asf.alaska.edu/. The reservoir water levels can be found at https://ipad.fas.usda.gov/cropexplorer/global_reservoir/. The GloFAS-ERA5 river discharge reanalysis data are available at https://cds.climate.copernicus.eu/cdsapp#!/dataset/cems-glofas-historical?tab=overview.