cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9fjedb
title: Occurrence Download

description: A dataset containing 401 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Perama hirsuta Aubl.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 401 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013079-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.116050
title: Total carbon dioxide and total alkalinity at station TT043_13-26
DOI: 10.1594/pangaea.830800
title: Closed-flow column experiment results (zip-archive 67 kB)

description: Transport studies that employ column experiments in closed-flow mode complement classical approaches by providing new characteristic features observed in the breakthrough behavior and an equilibrium between liquid and solid phase. Specific to the closed-flow mode is the recirculation of the column effluent to the inflow via a mixing vessel. Depending on the ratio of volume of the water-filled pore space to the volume of the mixing vessel, a damped oscillating solute concentration emerges in effluent and mixing vessel. Oscillation frequency, extent of damping and amplitude are thereby governed by the transport properties of the porous medium. These characteristics allow for the analysis of transport processes in soils in a similar fashion as known for classical open-flow column experiments. However, the experimental design considers feedbacks of liquid solid interactions by connecting the effluent solution with the inflow. In this way, solute and porous medium can equilibrate with respect to all physicochemical parameters, thereby permitting a convenient consideration of mass balances. With this paper, the features emerging in the breakthrough of column experiments run in closed-flow mode and methods of evaluation are illustrated under experimental boundary conditions forcing the appearance of these oscillations. Additionally, the effect of flow velocity and mixing vessel volume on the breakthrough is investigated. We demonstrate that the water content of the porous medium and the pumping rate can be determined from a conservative tracer breakthrough curve. In this way, external preconditioning of the soil material, e.g., drying, can be avoided. This renders the closed-flow column approach especially interesting for the study of porous media with diverse mineral content and bacterial community that react strongly on changes in the water content. Furthermore, the basis for the modeling of closed-flow experiments is given by the derivation of constitutive equations and numerical implementation, validated by the presented experiments.
description: Supplement to: Ritschel, Thomas; Totsche, Kai-Uwe (2016): Closed-flow column experiments - insights into solute transport provided by a damped oscillating breakthrough behavior. Water Resources Research, 52(3), 2206-2221
DOI: 10.1594/pangaea.116082
title: Total carbon dioxide and total alkalinity at station TT043_26-24
DOI: 10.1594/pangaea.817195
title: (Table 1) Soil density and concentration of 10Beryllium and 26Aluminium in samples from two ash deposits in the McMurdo Dry Valleys

description: The McMurdo Dry Valleys, Antarctica (MDV) are among the oldest landscapes on Earth, and some landforms there present an intriguing apparent contradiction such that millions of years old surface deposits maintain their meter-scale morphology despite the fact that measured erosion rates are 0.1-4 m/Ma. We analyzed the concentration of cosmic ray-produced 10Be and 26Al in quartz sands from regolith directly above and below two well-documented ash deposits in the MDV, the Arena Valley ash (40Ar/39Ar age of 4.33 Ma) and the Hart ash (K-Ar age of 3.9 Ma). Measured concentrations of 10Be and 26Al are significantly less than expected given the age of the in situ air fall ashes and are best interpreted as reflecting the degradation rate of the overlying sediments. The erosion rate of the material above the Arena Valley ash that best explains the observed isotope profiles is 3.5 ± 0.41 x 10**-5 g/cm**2/yr (~0.19 m/Ma) for the past ~4 Ma. For the Hart ash, the erosion rate is 4.8 ± 0.21 x 10**-4 g/cm**2/yr (~2.6 m/Ma) for the past ~1 Ma. The concentration profiles do not show signs of mixing, creep, or deflation caused by sublimation of ground ice. These results indicate that the slow, steady lowering of the surface without vertical mixing may allow landforms to maintain their meter-scale morphology even though they are actively eroding.
description: Data extracted in the frame of a joint ICSTI/PANGAEA IPY effort, see http://doi.pangaea.de/10.1594/PANGAEA.150150
description: Supplement to: Morgan, Daniel J; Putkonen, Jaakko; Balco, Greg; Stone, John (2010): Quantifying regolith erosion rates with cosmogenic nuclides 10Be and 26Al in the McMurdo Dry Valleys, Antarctica. Journal of Geophysical Research, 115(F3), F03037
DOI: 10.17632/ttj49r2m2d
title: Datasets on Berlin PCD-variability

description: The cooling services from urban green spaces (UGS) are controlled by various green, grey and blue parameters which may show high spatial and temporal variabilities. This study analyzes the Land Surface Temperature (LST), the Park Cooling Distance (PCD) and Park Cooling Intensity (PCI) of 228 parks, 512 allotments and 143 cemeteries in Berlin (Germany), based on six hot summer Landsat 8 Oli scenes. While LST displayed a low temporal and spatial variability (mean CV: 0.04 to 0.07), both coefficients were much higher for PCD (CV: 0.8 to 1.1) and PCI (CV: 0.6 to 1.0). Among the three UGS types, 50% of the cemetery sites showed a low temporal PCD variability (CV &lt; 0.2), while only 20% of the allotment and 37% of the park sites belonged to this group. The PCD reliability was mainly related to outer parameters within the PCD, but regression analyses failed to conclusively explain this (R2: 0.3 to 0.4). Since the reliability of providing cooling services is an important feature of UGS sites, we developed a conceptual model for determining the relevance of UGS sites for UHI mitigation in Berlin. According to this approach, parks are most relevant, mainly due to their total area, abundance and high PCD, but also due to their proximity to the densely populated city center. Allotments provide the least and most unreliable cooling services in contrast to cemeteries where these are the most intense and most reliable, however least relevant due to their small total size and abundance.
DOI: 10.6084/m9.figshare.16782769.v1
title: Supplementary Material for: Identification of Candidate Genes in Early-Stage Invasive Ductal Carcinoma Patients with High-Risk Mortality Using Genes Commonly Involved in Breast Cancer: A Retrospective Study

description: <b><i>Introduction:</i></b> Invasive ductal carcinoma (IDC) of the breast is a heterogeneous disease characterized by multiple subtypes. IDC survival is highly impacted by tumor burden, molecular subtypes, and gene profiles. Gene mutation is a type of genomic instability regarded as having a considerable effect on IDC prognosis. Using integrated survival analysis, this study identified candidate genes and a high-risk group of patients with early-stage IDC to provide further understanding of the genetic characteristics associated with poor survival. <b><i>Methods:</i></b> The gene mutation profiles, baseline demographics, clinicopathologic variables, and treatment characteristics of the early-stage IDC subpopulation were downloaded from an open access data platform. These data were analyzed for a total of 444 patients. In total, 40 genes commonly involved in IDC were listed, and the genes exhibiting significant differences (as estimated using the log-rank test) were selected as the candidate genes. <b><i>Results:</i></b> The patients were divided into control, low-risk, and high-risk groups according to their gene mutation profiles. The 5-year overall survival rates of low-risk, control, and high-risk patients were 97.4%, 96.1%, and 73.0%, respectively. The high-risk group had a significantly higher risk of poor overall ­survival (adjusted hazard ratio = 6.57, 95% confidence interval = 1.51–28.7, <i>p</i> = 0.012) than that of the control group, and the low-risk group did not have a significant survival difference compared with control group. <b><i>Conclusions:</i></b> This study proposed an integrative approach for the identification of candidate genes for risk assessment of overall survival in these patients through typical survival analysis methods. The 14 candidate genes selected are particularly involved in cell-cycle processes, deoxyribonucleic acid repair, and drug resistance; their mutations were found to be generally associated with disease progression or therapeutic resistance, which is commonly associated with poor overall survival outcomes in IDC.
DOI: 10.6084/m9.figshare.22083425.v1
title: Tanu.pro

description: This is a list of papers submitted and published with weird emails. The domains of these emails don't correspond to the affiliation countries of the authors. Some of these papers have been already retracted for violation of peer review and other types of academic and publication misconduct. See preprint (Abalkina&Bishop, 2022) https://psyarxiv.com/2yf8z for more information.
DOI: 10.6084/m9.figshare.26830984.v1
title: CITES Listed Terrestrial Vertebrate Trade 2000-2021

description: Dataset documenting all CITES exporter-reported trade of terrestrial vertebrates from 2000-2021
DOI: 10.6084/m9.figshare.28803533.v1
title: Data for "Water table decline reduces soil organic carbon by decreasing particulate organic carbon in peatlands: Beyond enzymic and mineral protection"

description: we quantified the changes of POC, MOC, iron-bound organic carbon (Fe-OC) and their contributions to SOC across five successive water table gradients and three soil depths in Zoige peatland.
DOI: 10.1594/pangaea.116104
title: Total carbon dioxide and total alkalinity at station TT043_8-1
DOI: 10.1594/pangaea.121327
title: Total carbon dioxide and alkalinity at station TT012_5-CTD45
DOI: 10.1594/pangaea.116096
title: Total carbon dioxide and total alkalinity at station TT043_5-1
DOI: 10.1594/pangaea.121252
title: Total carbon dioxide and alkalinity at station TT008_5-CTD19
DOI: 10.17632/43pcbb94by
title: Word-initial lenition in Old English

description: This document contains Old English words of the Old Norse origin, as found in Random House Webster’s College Dictionary (2001) and Collins Online Dictionary (2022), and thus English words of the Old Norse origin which were loaned into Middle English are excluded, such as vǣngir ‘wing’ and vindauga ‘window.’ A specific trajectory of the word-initial onset in Old Norse to the counterpart in Old English shows that the lenition of /v/ ~ /hv/ > [w] had occurred at what may be generally considered as “strong positions” (Ségéral and Scheer 2008: 131) in the Old English era. The strong positions refer to a position within the syllable where the occurrence of lenition is not favored, such as a word-initial onset position and a post-coda position (Honeybone 2012).
DOI: 10.6084/m9.figshare.25976224.v2
title: CosMx human NSCLC (clustered)

description: Processed dataset from He et al., 2022 of Nanostring CosMx spatial transcriptomics measurement of 8 sections from 5 Non-Small Cell Lung Cancer (NSCLC) patients. Cells are clustered based on their cellular niches (also known as spatial domains or spatial clusters) using CellCharter.
DOI: 10.6084/m9.figshare.6743339.v1
title: Natural selection by pathogens increases genetic variation in susceptibility to infection

description: Datasets to measure genetic variation in viral load to natural and non-natural sigma viruses of four Drosophila species, along with MCMCglmm R script to analyse data.
DOI: 10.1594/pangaea.116216
title: Total carbon dioxide and total alkalinity at station TT049_8-2
DOI: 10.6084/m9.figshare.14685441.v1
title: Data, code and model of BG

description: The datasets contain the model of CNMM-DNDC, the ouput data for Figs. 1-3 and the code of NEST module.
DOI: 10.6084/m9.figshare.14955174.v3
title: AMS data of the southeastern Tibetan Plateau and its edges

description: The AMS data sets obtained from the Cretaceous and Cenozoic strata of the southeastern Tibetan Plateau and its edges
DOI: 10.6084/m9.figshare.1552017.v1
title: Breast Cancer Dataset

description: Breast Cancer Dataset
DOI: 10.1594/pangaea.116176
title: Total carbon dioxide and total alkalinity at station TT049_20-2
DOI: 10.17632/tcnh63tpgf
title: Architecture and implementation of ulrb algorithm in R, source data

description: This dataset makes available the source data used for all analyses made in the original research article entitled "Architecture and implementation of ulrb algorithm in R", for the journal Ecological Informatics. 

Short description of files:
nice_ASVs.csv - ASV abundance table in long format;
nice_otu_long - OTU abundance table in long format;
nice_otu_wide - OTU abundance table in wide format.

All files correspond to samples collected from seawater of the Arctic Ocean, during the Norwegian Young Sea Ice Expedition, using V4V5 16S rRNA gene amplicon sequencing. 

To use this dataset, please cite: 
- Pascoal, F. et al. (2025) “Definition of the microbial rare biosphere through unsupervised machine learning,” Communications Biology, 8(1), p. 544. Available at: https://doi.org/10.1038/s42003-025-07912-4.
- Pascoal, F. et al. (2022) “Exploration of the Types of Rarity in the Arctic Ocean from the Perspective of Multiple Methodologies,” Microbial Ecology, 84(1), pp. 59–72. Available at: https://doi.org/10.1007/s00248-021-01821-9.
- de Sousa, A.G.G. et al. (2019) “Diversity and Composition of Pelagic Prokaryotic and Protist Communities in a Thin Arctic Sea-Ice Regime,” Microbial Ecology, 78(2), pp. 388–408. Available at: https://doi.org/10.1007/s00248-018-01314-2.
- Granskog, M.A. et al. (2018) “Atmosphere-Ice-Ocean-Ecosystem Processes in a Thinner Arctic Sea Ice Regime: The Norwegian Young Sea ICE (N-ICE2015) Expedition,” Journal of Geophysical Research: Oceans, 123(3), pp. 1586–1594. Available at: https://doi.org/10.1002/2017JC013328.
DOI: 10.6084/m9.figshare.20424375.v1
title: Supplementary Material for: Control of Diabetes Mellitus and Long-Term Prognosis in Stroke Patients: The Shiga Stroke and Heart Attack Registry

description: <b><i>Background:</i></b> The relationship between diabetes control status and long-term prognosis after stroke incidence remains unclear. This study aimed to investigate the effect of diabetes status at admission on long-term survival in patients with first-ever stroke. <b><i>Methods:</i></b> A retrospective cohort study was conducted based on the Shiga Stroke and Heart Attack Registry in Japan. Patients were classified according to their diabetes status and glycated hemoglobin (HbA1c) value at hospital admission into the following: (1) free of diabetes (no history of diabetes and HbA1c &lt;6.5%); (2) good control (history of diabetes and HbA1c &lt;7%; free of history and 6.5% ≤HbA1c &lt;7%); and (3) poor control (with or without a history of diabetes and HbA1c ≥7%). Multivariable Cox regression models were used to evaluate the association between diabetes status and long-term survival from stroke onset. Additionally, we also evaluated the association between diabetes status and conditional survival, beginning 29 days after stroke onset. <b><i>Results:</i></b> A total of 6,331 first-ever stroke patients were eligible for this study. Among study patients, the mean (±SD) age was 72.85 ± 13.19 years, and the mean (±SD) follow-up year was 2.76 ± 1.66 years; additionally, 42.09% of patients were women. Among patients with all strokes, considering the free-of-diabetes group as the reference group, the adjusted hazard ratio (95% confidence interval) for mortality was 1.26 (1.10, 1.44) in the good control group and 1.22 (1.05, 1.41) in the poor control group. Among patients with ischemic stroke, the adjusted hazard ratio was 1.24 (1.06, 1.46) in good control group and 1.27 (1.08, 1.50) in poor control group. After excluding patients who died within 28 days, the adjusted hazard ratio for conditional mortality in the poor control group was 1.31 (1.12, 1.54) among all stroke patients and 1.29 (1.08, 1.54) among ischemic stroke patients. No significant associations were observed between diabetic status and long-term mortality in intracerebral hemorrhage patients. <b><i>Conclusions:</i></b> The findings suggest that first-ever stroke patients with diabetes exhibited a higher risk of all-cause mortality than those without diabetes, particularly in the overall stroke and ischemic stroke populations. Additionally, in stroke populations after 28 days of onset, high risk of long-term mortality was stated in stroke patients with poor HbA1c control.
DOI: 10.1594/pangaea.121283
title: Total carbon dioxide and alkalinity at station TT008_5-CTD50
DOI: 10.1594/pangaea.121292
title: Total carbon dioxide and alkalinity at station TT008_5-CTD59
DOI: 10.1594/pangaea.121331
title: Total carbon dioxide and alkalinity at station TT012_5-CTD60
DOI: 10.1594/pangaea.116064
title: Total carbon dioxide and total alkalinity at station TT043_19-2
DOI: 10.1594/pangaea.121341
title: Total carbon dioxide and alkalinity at station TT012_5-CTD83
DOI: 10.17632/74drmd922j
title: LOL RAW DATA

description: This dataset was collected to analyze and predict gamer churn in League of Legends (LOL) during Season 13. Data was obtained from the LOL Korea server via Riot Games' API and web scraping tools such as Selenium and Pandas. The raw dataset consists of 295,486 cases.
DOI: 10.6084/m9.figshare.5520160.v1
title: Broad Institute Cancer Dependency Map, CRISPR Avana dataset 17Q4

description: Results of genome-wide CRISPR-Cas9 screens with the Avana sgRNA library in 341 cancer cell lines performed at the Broad Institute as part of the Cancer Dependency Map project.<br>For the latest dataset available and to subscribe to our mailing list visit https://depmap.org. <br>This dataset is the updated version of the Avana files published in:<br>Meyers, Bryan, et al. Computational correction of copy-number effect improves specificity of CRISPR-Cas9 essentiality screens in cancer cells. Nature Genetics. 2017.<br>It has been changed as follows:<br>- Cell line PK59_PANCREAS removed for quality control failure.
DOI: 10.1594/pangaea.121272
title: Total carbon dioxide and alkalinity at station TT008_5-CTD39
DOI: 10.1594/pangaea.121336
title: Total carbon dioxide and alkalinity at station TT012_5-CTD75
DOI: 10.17632/dwms74gb3f
title: Dataset for freshness classification of Pool barb fish (Puntius sophore)

description: It contains high-quality images of Pool barb fish (Puntius sophore) with an excel file containing Colour, Shape, and Texture at 10 different timestamps:- 09.30 AM, 10.00 AM, 10.30 AM, 11.00 AM, 11.30 AM, 12.00 PM, 12.30 PM, 01.00 PM, 01.30 PM, and 02.30 PM timestamps.

The authors want to thank Sri Snehasis Guha, PIC of Malda Polytechnic, 5th-semester students of the department of Food Processing Technology, Malda polytechnic, Government of West Bengal, India, for their support.
DOI: 10.6084/m9.figshare.14524983.v2
title: Pesticide and obesity

description: Dataset for study for pesticide exposure and obesity among Thai farmer.<br>
DOI: 10.1594/pangaea.121291
title: Total carbon dioxide and alkalinity at station TT008_5-CTD58
DOI: 10.1594/pangaea.121296
title: Total carbon dioxide and alkalinity at station TT008_5-CTD62
DOI: 10.17605/osf.io/p5d9y
title: CanPreg datasets

description: This dataset supports the CanPreg study, Cannabis Use During Pregnancy: Insights from Online Discourse and Socioeconomic Indicators Across the USA and Canada. It provides comprehensive resources for analyzing regional variations in cannabis-related discussions during pregnancy. The dataset includes: (1) geographical boundary shapefiles for the USA and Canada, enabling spatial analysis; (2) aggregated tweet counts integrated with survey data, offering insights into social discourse trends; (3) regional and temporal distributions of tweet and user counts, capturing activity patterns across countries; (4) annotated ground-truth data from a random sample of 1,000 tweets and 200 users, facilitating supervised learning and validation; and (5) anonymized tweet metadata, preserving privacy while retaining essential CanPreg keywords, anonymized user identifiers, and geolocation limited to state (USA) and province (Canada) levels. This dataset is a valuable resource for researchers examining the intersection of online discourse, public health, and socioeconomics.
DOI: 10.17632/gc3mchdc7x
title: Data for: Physiotherapists deliver management broadly consistent with best practice guidelines in rotator cuff tendinopathy: an observational study

description: Data for survey
DOI: 10.6084/m9.figshare.17097035.v2
title: Entodon and Hypnum genome project

description: MSA of Entodon, Hypnum and other 15 green plants
DOI: 10.6084/m9.figshare.12670856.v9
title: Eukdetect database

description: Eukdetect marker and taxonomy databases.
DOI: 10.6084/m9.figshare.16682029.v4
title: SCP_Example_Projects

description: Example projects for HBSniff detection.
DOI: 10.6084/m9.figshare.17195072.v3
title: melon pangenome

description: We constructed a melon pangenome based on 297 accessions comprising 168 Mb novel sequences and 4,325 novel genes. The non-reference genome sequences and annotated genes were retrieved. This project includes a list of the dataset as follow.
DOI: 10.6084/m9.figshare.6100004.v1
title: Landscape genomic conservation assessment of a narrow-endemic and a widespread morning glory from Amazonian savannas

description: Genotype and sequence data for two morning glories (Convolvulaceae): Ipomoea cavalcantei and Ipomoea maurandioides. For each species we provide genotypes in Variant Call Format and sequences in FASTA format.<br>The data belongs to the following accepted manuscript:<br>Lanes ECM, Pope NS, Alves R, Carvalho NM, Giannini TC, Giulietti AM, Imperatriz-Fonseca VL, Monteiro W, Oliveira GC, Silva AR, Siqueira JO, Souza-Filho PMW, Vasconcelos S, Jaffé R (2018) Landscape genomic conservation assessment of a narrow-endemic and a widespread morning glory from Amazonian savannas. Frontiers in Plant Sciences. doi: 10.3389/fpls.2018.00532
DOI: 10.1594/pangaea.853107
title: Underway physical oceanography and carbon dioxide measurements during Thomas G. Thompson cruise TT043

description: Cruise QC flag: D (see further details). The Fair Data Use Statement for SOCAT can be found at hdl:10013/epic.48576.d001
DOI: 10.17632/77jzhp8z5c
title: Hospital waiting area distribution

description: This dataset includes relevant data of 40 waiting areas in 3 hospitals in Zhejiang Province, China, including: Type of department served by each waiting area. The content of the data set was obtained through the field records of data providers.
DOI: 10.6084/m9.figshare.2059812.v1
title: BlueHive Computational Compendium

description: This paper provides a brief description of a standard computational cluster (collection of computer nodes). Provided are instructions for easy login and file transfer, manipulating files and directories, creation of submission scripts using the PBS job management system and monitoring progress of the distributed computations. Benchmarking data for certain common codes in computational molecular sciences are presented as well. This paper will hopefully help users to exploit resources in a more manner.<br>