cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/dyvfntjcz7.1
title: Data for: Accurate representation of the distributions of the 3D Poisson-Voronoi typical cell geometrical features

description: gvolume.txt contains the grid of points (xgrid.v) and the kernel density estimate (Epanechnikov kernel, cross validation bandwidth h=0.05) of volume of 1,000,000 Poisson-Voronoi typical cells ( intensity parameter lambda=1) evaluated in the grid points (y.v). gsurfacearea.txt contains the grid of points (xgrid.a) and the kernel density estimate (Epanechnikov kernel, cross validation bandwidth h=0.25) of surface area of 1,000,000 Poisson-Voronoi typical cells ( intensity parameter lambda=1) evaluated in the grid points (y.a). gnfaces.txt contains the absolute (nf) and relative frequencies (pf) of number of faces 1,000,000 Poisson-Voronoi typical cells ( intensity parameter lambda=1)
DOI: 10.5061/dryad.11kf1ck/1
title: Figure 1 Data and code
DOI: 10.5061/dryad.11kf1ck/2
title: Figure 2 + 3 Raw Data
DOI: 10.5061/dryad.2c0g95d/1
title: Supplementary Material 1

description: Occurrence data for modern and LIG reef corals, as well as the training data for ecological niche modelling. Training data is subsampled to 1.25° x 1.25° and clipped to cells with available environmental data.
DOI: 10.5061/dryad.2c0g95d/2
title: Supplementary Material 2

description: Additional methods and results
DOI: 10.5061/dryad.2c0g95d/3
title: Supplementary Material 3

description: Sum of cells within 5° latitudinal bins for all model classes, binary thresholds and climate scenarios.
DOI: 10.5061/dryad.3d53782/1
title: Diquelou_BEHECO2019_data

description: This dataset contains data used for analysis in the manuscript entitled "It’s a trap! Invasive common mynas learn socially about control-related cues" by Marie C. Diquelou and Andrea S. Griffin, published in Behavioral Ecology. For details please refer to the manuscript and the readme file attached.
DOI: 10.5061/dryad.3m9p02s/1
title: Colangelo_et_al_BMC

description: TPS file and R script
DOI: 10.5061/dryad.687m14t.1
title: Data from: Macroevolutionary patterns in overexpression of tyrosine: an anti-herbivore defense in a speciose tropical tree genus, Inga (Fabaceae)
DOI: 10.5061/dryad.687m14t.1/1.1
title: Retention time and abundance of tyrosine and derivatives in Inga

description: Tyrosine content and the retention times and abundances of tyrosine, tyramine and DOPA gallate ions for each species and site. The ‘Species code’ is our identifier for both species and site. Codes beginning in 'Ing' are from Barro Colorado Island, Panama; 'LA' are from Los Amigos, Peru, 'M' are from Manaus (Km41), Brazil; 'N' are from Nouragues, French Guiana; and 'T' are from Tiputini, Ecuador. Exp and M are expanding and mature leaves, respectively, with ‘n’ indicating sample size. RT is retention time on the UPLC column. TIC is total ion count or ion abundance. Most species/site combinations had five independent UPLC-MS analyses; the exceptions are noted. All UPLC-MS analyses were as described in ‘Analysis of gallic acid depsides of tyrosine, tyramine and DOPA’. For this table, one sample with the highest signal was analyzed per species/site combination by searching for the m/z values given in Table S2. Since the ion abundances of these amines were consistently higher by factors of 6x to 60x for positive mode relative to negative mode, this analysis exclusively used positive mode data in order to maximize sensitivity.
DOI: 10.5061/dryad.687m14t.1/2.1
title: Transcriptomic data for Inga species

description: Quality metrics for transcriptomes. Quantity and quality of RNA, library size, Trinity assembly metrics and the percentage of contigs annotated through the Trinnotate pipeline.
DOI: 10.5061/dryad.687m14t.1/3.1
title: Recorded damage to Inga by insect herbivores separated by site and tyrosine expression

description: Herbivore damage to expanding leaves for species with and without tyrosine overexpression. Species that contained tyrosine-derivatives in addition to free tyrosine were included in the tyrosine-plus category. Data are from French Guiana (FG), Brazil (B), Peru (Pe) and Ecuador (E). Panama is excluded from the analysis as only one species contained tyrosine. An ANOVA exploring the effect of tyrosine status (T+ or T-) on herbivory showed lower damage for species without tyrosine (p &lt; 0.001).
DOI: 10.5061/dryad.687m14t.2/5.2
title: Salmon counts with I_sapindoides as reference

description: Salmon counts for each transcriptome. Generated using I. sapindoides BCI-97 as the reference transcriptome
DOI: 10.5061/dryad.687m14t.2/6.2
title: Annotation of Inga transcriptomes

description: Trinnotate annotation for transcriptomes assembled from RNASeq of wild collected expanding leaves
DOI: 10.5061/dryad.79q74n7/1
title: Thaw depth

description: This file contains annual thaw depths at moderate and severe and unburned plots, along with standard deviations and standard errors for each year
DOI: 10.5061/dryad.79q74n7/2
title: Plant_BSi_Concentrations

description: This file contains plant BSi concentrations (as SiO2 by dry weight) for each individual plant sample collected. Treatment data and plant functional type for each sample also indicated.
DOI: 10.5061/dryad.79q74n7/3
title: Tributary_DSiConcentrations_1.15.19

description: This file contains DSi concentrations in burned and unburned tributaries from the summer (June, July, August) of 2017.
DOI: 10.5061/dryad.79q74n7/4
title: Peat_ASiConcentrationData_7.9.19

description: This datafile contains soil (peat) ASi concentration data for all burn types for the O and A soil horizons
DOI: 10.5061/dryad.869b2n0/1
title: The association between alcohol consumption, cardiac biomarkers and myocardial function in patients with atrial fibrillation referred for catheter ablation
DOI: 10.5061/dryad.869b2n0/2
title: The association between alcohol consumption, cardiac biomarkers and myocardial function in patients with atrial fibrillation referred for catheter ablation
DOI: 10.5061/dryad.876r5m5/1
title: Supplemental table
DOI: 10.5061/dryad.8cq6427/1
title: Concatenated_sequence_alignment.fasta

description: This file contains the concatenated sequences used to build phylogenetic reconstructions. This file is in fast format and can be open with a text editor software.
DOI: 10.5061/dryad.8cq6427/2
title: Data

description: This excel file contains all data used for the analysis of this study.
DOI: 10.5061/dryad.8cq6427/3
title: Genbank_accession_numbers

description: This excel file contains all GenBank accession numbers corresponding to the genetic markers used for phylogenetic reconstruction.
DOI: 10.5061/dryad.8cq6427/4
title: R_script_final

description: This file is the R script used for the different analysis conducted in this study, The file can be open using R studio.
DOI: 10.5061/dryad.8cq6427/5
title: Tree

description: This file is the Bayesian phylogenetic reconstruction used to assess phenotypic complexity. The file could be open with a text editor software.
DOI: 10.5061/dryad.8cq6427/6
title: README

description: This README file can be open using a text editor software and contains all information needed to understand the different files in this metadata submission.
DOI: 10.5061/dryad.8mv00jv/2
title: Virtual Reconstruction of Carduispongia pedicula paratype (OUMNH C.36062)

description: 3D Virtual Reconstruction of OUMNH C.36010, Carduispongia pedicula holotype. VAXML/STL format. From physical-optical tomography data.
DOI: 10.5061/dryad.8mv00jv/3
title: Tomograms of Carduispongia pedicula paratype (OUMNH C.36062)

description: Tomograms of OUMNH C.36062, Carduispongia pedicula. BMP format. Colour photographic images from physical-optical tomography, registered and cropped. Images are captured at 225 pixels/mm. Spacing between slices is 30 microns.
DOI: 10.5061/dryad.8mv00jv/4
title: Tomograms of Carduispongia pedicula holotype (OUMNH C.36010) 1/3

description: Tomograms of OUMNH C.36010, Carduispongia pedicula hotype. BMP format. Synchrotron phase-contrast tomograms (see main manuscript for details). Part 1 of 3 (Tomograms 0000-0499)
DOI: 10.5061/dryad.8mv00jv/5
title: Tomograms of Carduispongia pedicula holotype (OUMNH C.36010) 2/3

description: Tomograms of OUMNH C.36010, Carduispongia pedicula hotype. BMP format. Synchrotron phase-contrast tomograms (see main manuscript for details). Part 2 of 3 (Tomograms 0500-0999)
DOI: 10.5061/dryad.8mv00jv/6
title: Tomograms of Carduispongia pedicula holotype (OUMNH C.36010) 3/3

description: Tomograms of OUMNH C.36010, Carduispongia pedicula hotype. BMP format. Synchrotron phase-contrast tomograms (see main manuscript for details). Part 3 of 3 (Tomograms 1000-1559)
DOI: 10.5061/dryad.987md65/6
title: Video S2: Long Delay - Chimpanzee

description: Video S2: Long Delay (Study 1) – Chimpanzee. Experimenter 1 (E1) baits and fake-baits the two containers (in counterbalanced order across trials) while Experimenter 2 (E2) attracts the chimpanzee to the centered starting location on the other side of the room. Once the baiting is complete, the chimpanzee approaches the left (correct) container and E1 then gives the food. In initial learning trials the ape could self-correct if they initially made an incorrect choice, whereas in test trials one week later they could not. Correct side was counterbalanced across individuals.
DOI: 10.5061/dryad.987md65/7
title: Video S3: Multiple Locations - Bonobo

description: Video S3: Multiple Locations (Study 2) – Bonobo. The experimenter (E) initially hid four test pieces of food in the enclosure while the bonobo observed; four control pieces had been previously hidden while the ape was out of sight. The video shows the start of the search phase after a 10-minute delay following the baiting demonstration. This young bonobo is still in a nursery group, so a caretaker sits with her in the center of the enclosure (never providing any social cues). E signals to the caretaker that the 10-minute delay has concluded, and the bonobo is released. This subject rapidly approaches two test locations (a tree and a water pool). Test and control locations were counterbalanced across subjects tested in the same enclosure. This clip showed the first 30s of the search phase; the entire search phase lasted 10 min.
DOI: 10.5061/dryad.987md65/8
title: Video S4: Multiple Locations - Chimpanzee

description: Video S4: Multiple Locations (Study 2) – Chimpanzee. The experimenter (E) initially hid four test pieces of food in the enclosure while the chimpanzee observed; four control pieces had been previously hidden while the ape was out of sight. The video shows the start of the search phase after a 10-minute delay following the baiting demonstration. This chimpanzee observed the baiting from an adjacent tunnel and is released by a caretaker after E signals the 10-minute delay has concluded. This subject rapidly approaches two test locations (a grass patch and a water fountain). Test and control locations were counterbalanced across subjects tested in the same enclosure. This clip showed the first 30s of the search phase; the entire search phase lasted 10 min.
DOI: 10.5061/dryad.d1m2q20/1
title: Flowering Success

description: Flowering success of the 10 (central and peripheral) introduced species. Each row corresponds to the floral abundance of one plant individual ("Plant_Number", 1-3), of one introduced plant species, at each sampling round, subplot and plot. Columns are: plot (A and B), number of sampling round, subplot, species name, plant number and floral abundance.
DOI: 10.5061/dryad.d1m2q20/2
title: Flower Abundance

description: Floral abundance of introduced and resident plant species. Floral abundance was weekly ("Week_Number") sampled per species, per subplot, per plot. Columns are plot (A and B), week number, number of sampling round, subplot, species name and floral abundance.
DOI: 10.5061/dryad.d1m2q20/3
title: Plant_Pollin_Interaction

description: Interactions between plant species and pollinator individuals. Columns are: plot (A and B), number of sampling round, subplot, plant species name, code of pollinator individual, pollinator order and species name. During timed observations (15 min per subplot per sampling round), if no interactions were observed, "Plant_Species", "Pollin_Code",	"Pollin_Order" and "Pollin_Species" are filled with NA.
DOI: 10.5061/dryad.js76054/1
title: image_list_field_descriptions

description: Explanation of field names in image_list.csv
DOI: 10.5061/dryad.js76054/2
title: image_list

description: Table of all fox images and their associated fox IDs, for one patch surveyed in summer 2013, autumn 2013, winter 2013-14 and spring 2014. Field descriptions are in image_list_field_descriptions.csv.
DOI: 10.5061/dryad.js76054/8
title: survey_1_summer_2013 image files

description: Camera trap photos of foxes taken in one garden ('patch') during a 40-day camera trap survey in summer 2013. Photos were taken using a Scoutguard SG565F-8M motion-sensing camera trap.
DOI: 10.5061/dryad.r837vv7.2
title: Data from: The N-end Rule Pathway and Ubr1 enforce protein compartmentalization via P2-encoded cellular location signals
DOI: 10.5061/dryad.tr4185n/47
title: Proteomic analysis of Leishmania-infected murine macrophages
DOI: 10.5061/dryad.tr4185n/48
title: Proteomic analysis of Leishmania-infected murine macrophages
DOI: 10.5061/dryad.tr4185n/49
title: Proteomic analysis of Leishmania-infected murine macrophages
DOI: 10.5061/dryad.tr4185n/50
title: Proteomic analysis of Leishmania-infected murine macrophages
DOI: 10.5061/dryad.tr4185n/51
title: Proteomic analysis of Leishmania-infected murine macrophages
DOI: 10.5061/dryad.tr4185n/52
title: Proteomic analysis of Leishmania-infected murine macrophages
DOI: 10.5061/dryad.tr4185n/53
title: Proteomic analysis of Leishmania-infected murine macrophages
DOI: 10.5061/dryad.tr4185n/54
title: Proteomic analysis of Leishmania-infected murine macrophages
DOI: 10.5061/dryad.tr4185n/55
title: Proteomic analysis of Leishmania-infected murine macrophages
DOI: 10.5061/dryad.vk4br80/1
title: data

description: Raw genotypes taken from a colony of Antarctic fur seal (Arctocephalus gazella) samples (n=234) at Bird Island, South Georgia between the years of 2000 and 2014. They are scored at 13 immune and 48 neutral microsatellite markers.
DOI: 10.5061/dryad.vk4br80/13
title: p3_in_fur_seal
DOI: 10.5061/dryad.vk4br80/14
title: pvalues

description: Table of p-values for applying a false discovery rate correction
DOI: 10.5061/dryad.vk4br80/15
title: transcriptlength
DOI: 10.5061/dryad.vr4bh74/1
title: Mallard data

description: This data set includes Mallard band-recovery data (marr), design-based population estimates and their standard errors, precipitation and temperature data, as well as the Bird Conservation Region (BCR) each area belongs to.
DOI: 10.17632/8jkrhfnxpp.1
title: Data for: Endorectal balloon and internal pudendal arteries dose optimization for prostate SBRT: a dosimetric impact on erectile function preservation?

description: Data of the dosimetric results of the successive optimization plans and geometric data
DOI: 10.17632/fdc8y9dt75.1
title: Data for: Pulse-tube refrigerator with a warm displacer: theoretical treatment in the harmonic approximation

description: This doc contains the calculation in more detail
DOI: 10.5061/dryad.11kf1ck/3
title: Figure 2+3 SAS code
DOI: 10.5061/dryad.11kf1ck/4
title: Figure 4 Data and Code
DOI: 10.5061/dryad.11kf1ck/5
title: CostOfResistance Analyses
DOI: 10.5061/dryad.1473s5c.2
title: Data from: When one phenotype is not enough - divergent evolutionary trajectories govern venom variation in a widespread rattlesnake species
DOI: 10.5061/dryad.1473s5c.2/1.2
title: Genotype and diet datasets

description: The excel file includes three spreadsheets: the first one includes with all the museum specimen of *Crotalus scutulatus* inspected for stomach content; the second one includes a count table of prey items identified in the preserved specimen; The third spreadsheet includes the samples used for population genetic analysis with geographic coordinates, population assignment and microsatellite genotype information.
DOI: 10.5061/dryad.1s73fc5/1
title: Analysis 1 and 3: Sentinel events

description: Data supporting analysis 1 (Probability to act as sentinel guard) and 3 (Distribution of sentinel duties among group members)
DOI: 10.5061/dryad.1s73fc5/2
title: Analysis 2: Sentinel duration
DOI: 10.5061/dryad.1s73fc5/3
title: Analysis 4: Playback Experiments
DOI: 10.5061/dryad.2h87r1f/1
title: Metabarcode sequence data and MID tags

description: Sequence data obtained DNA metabarcoding of fecal samples. The ReadMe file contains "MID" tag identifiers used to demultiplex samples with the Obitools software prior to analysis. The ReadMe file contains a column referencing 5 raw Illumina fastq files that contain the data. One of these raw Illumina fastq files is available to download from this Dryad DOI; four raw Illumina fastq files are available from a previous Dryad DOI, which is linked below: Kartzinel TR, Pringle RM (2014) Data from: Molecular detection of invertebrate prey in vertebrate diets: trophic ecology of Caribbean island lizards. Dryad Digital Repository. https://doi.org/10.5061/dryad.f18k5
DOI: 10.5061/dryad.2v6b37r/1
title: Hamilton et al_CBB_development_data

description: Coffee berry borer development rates, abundance per berry, position in the berry, and berry moisture from five farms on Hawaii Island. Micro (branch-level) and macro (farm-level) weather data (temperature, Relative humidity, solar radiation, rainfall) for five farms on Hawaii Island.
DOI: 10.5061/dryad.5f7f6pb/1
title: Raw data

description: Raw data and explanatory information for Experiments 1 and 2.
DOI: 10.5061/dryad.67r78cn/1
title: Self-grooming

description: Self-grooming in each experimental group.
DOI: 10.5061/dryad.6f5k585/1
title: The effect of presence or absence of exercise and/or physical activity on non-restorative sleep on BMJ Open

description: This dataset is used in manuscript entitled "The effect of presence or absence of exercise and/or physical activity on non-restorative sleep by gender and age: a cross-sectional study" on BMJ Open in review. All variables used in the manuscript is included in this dataset, such as participants' gender, age (age group), engagement in exercise, engagement in physical activity, sleep quality (presence of non-restorative sleep) and so on.
DOI: 10.5061/dryad.b1r6km8/1
title: Tree data of all sites

description: Tab.1: TreeID, Box-dimension, Species, Total tree height in meters, diameter at breast height in cm, surface-to-volume ratio  Tab.2.: Box-dimension, TreeID, Species, Plot, Diametergrowth (2016-17) in cm, Heightgrowth (2016-17) in m . Tab.3: idplot, subarea, idtree, Hegyi (radius: 7.5m), box-dimensiom
DOI: 10.5061/dryad.c270ft8.1
title: Data from: Abundance drives broad patterns of generalisation in plant-hummingbird pollination networks
DOI: 10.5061/dryad.c270ft8.1/1.1
title: Plant-hummingbird interaction networks

description: 19 plant-hummingbird interaction networks. If used, please ensure taxonomy is up-to-date and cite Simmons, B. I., Vizentin‐Bugoni, J. , Maruyama, P. K., Cotton, P. A., Marín‐Gómez, O. H., Lara, C. , Rosero‐Lasprilla, L. , Maglianesi, M. A., Ortiz‐Pulido, R. , Rocca, M. A., Rodrigues, L. C., Tinoco, B. , Vasconcelos, M. F., Sazima, M. , González, A. M., Sonne, J. , Rahbek, C. , Dicks, L. V., Dalsgaard, B. and Sutherland, W. J. (2019), Abundance drives broad patterns of generalisation in plant–hummingbird pollination networks. Oikos. doi:10.1111/oik.06104
DOI: 10.5061/dryad.c270ft8.2
title: Data from: Abundance drives broad patterns of generalisation in plant-hummingbird pollination networks
DOI: 10.5061/dryad.c270ft8.2/1.2
title: Plant-hummingbird interaction networks

description: 19 plant-hummingbird interaction networks. If used, please ensure taxonomy is up-to-date and cite Simmons, B. I., Vizentin‐Bugoni, J. , Maruyama, P. K., Cotton, P. A., Marín‐Gómez, O. H., Lara, C. , Rosero‐Lasprilla, L. , Maglianesi, M. A., Ortiz‐Pulido, R. , Rocca, M. A., Rodrigues, L. C., Tinoco, B. , Vasconcelos, M. F., Sazima, M. , González, A. M., Sonne, J. , Rahbek, C. , Dicks, L. V., Dalsgaard, B. and Sutherland, W. J. (2019), Abundance drives broad patterns of generalisation in plant–hummingbird pollination networks. Oikos. doi:10.1111/oik.06104
DOI: 10.5061/dryad.c270ft8.2/2.2
title: Species abundances from each of the 19 plant-hummingbird pollination networks

description: If used, please ensure taxonomy is up-to-date and cite Simmons, B. I., Vizentin‐Bugoni, J. , Maruyama, P. K., Cotton, P. A., Marín‐Gómez, O. H., Lara, C. , Rosero‐Lasprilla, L. , Maglianesi, M. A., Ortiz‐Pulido, R. , Rocca, M. A., Rodrigues, L. C., Tinoco, B. , Vasconcelos, M. F., Sazima, M. , González, A. M., Sonne, J. , Rahbek, C. , Dicks, L. V., Dalsgaard, B. and Sutherland, W. J. (2019), Abundance drives broad patterns of generalisation in plant–hummingbird pollination networks. Oikos. doi:10.1111/oik.06104
DOI: 10.5061/dryad.g7n0k6n/1
title: Full data set for all figures and analyses

description: Spreadsheets containing the following: plant metabolites, insect choice and no-choice behavioral data, larval growth, oxidative stress.
DOI: 10.5061/dryad.j35fq7r/1
title: Tropical

description: Tropical butterfly monitoring data collected over two to nine consecutive years in five tropical/subtropical forest sites under standardized monitoring protocols
DOI: 10.5061/dryad.js76054/10
title: survey_10_winter_2013 image files

description: Camera trap photos of foxes taken in one garden ('patch') during a 40-day camera trap survey in winter 2013-14. Photos were taken using a Scoutguard SG565F-8M motion-sensing camera trap.
DOI: 10.5061/dryad.js76054/11
title: survey_17_spring_2014 image files

description: Camera trap photos of foxes taken in one garden ('patch') during a 40-day camera trap survey in spring 2014. Photos were taken using a Scoutguard SG565F-8M motion-sensing camera trap.
DOI: 10.5061/dryad.js76054/12
title: README for all image files
DOI: 10.5061/dryad.js76054/9
title: survey_5_autumn_2013 image files

description: Camera trap photos of foxes taken in one garden ('patch') during a 40-day camera trap survey in autumn 2013. Photos were taken using a Scoutguard SG565F-8M motion-sensing camera trap.
DOI: 10.5061/dryad.jv2hd72/1
title: Population performance and environmental conditions of 43 Carex caryophyllea -populations in southern Finland
DOI: 10.5061/dryad.pm66g75/1
title: Correlation Coefficients and Variance/Covariance Matrix

description: Correlation coefficients from published studies on eDNA particle concentration and abundance, including variance/covariance matrix used to account for non-independence of biomass/density correlations obtained from the same experimental subject groups.
DOI: 10.5061/dryad.q635dh0/1
title: Complete Questionnaire Data

description: Research participants' responses to walking through designed woodland, shrub and herbaceous planting
DOI: 10.5061/dryad.qr45fs4/1
title: Blackcaps fruit consumption

description: fruit consumption among blackcaps in 5 water treatments: 1.	ad libitum MAMT fruits, but only for five hours each day + saline solution of 0.6 ml NaCl 0.9% subcutaneous injection.  
2. simultaneous provisioning of fruits and water for 5 hours.
3. A group provided with drinking water for five hours, and after a one-hour break, provided with MAMT fruits for five hours 4 .A group provided with MAMT fruits for five hours, and after a one-hour break, provided with drinking water for five hours. 5. A water restricted group that was provided with MAMT fruits for five hours (n = 2).
DOI: 10.5061/dryad.r0d2570/1
title: TenuisGBR2012longtermsurvival

description: Empirical long term survival data for A. Tenuis larvae. "temp" is the temperature that the larvae were raised at, "rep" is the replicate number, "day" is the date the observation was taken, "age (h)" is the larval age (h) at the time of the observation, "age (d)" is the larval age (d) at the time of the observation, "larvae" is the number of larvae at the beginning of the experiment, "surv" is the number of larvae alive at the time of the observation.