cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.t2g2pp
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Knipowitschia thessala",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((40.81373 29.26705, 40.81373 50.94, -6.6 50.94, -6.6 29.26705, 40.81373 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025937-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/dans-xkj-7kuh
title: Getuigen Verhalen, Schiedamse kinderen op stap, interview 01

description: &lt;p&gt;Geïnterviewde komt uit een gezin met 12 kinderen. Hij is een aantal keren uitgezonden. In februari 1942 ging hij samen met een aantal zussen en broers 6 weken naar een jeugdherberg in Emst (Epe, Gelderland). De tweede keer, in 1943, ging hij naar Ezinge (Groningen). Op zaterdag 3 juni 1944 plaatste zijn moeder een advertentie in de Leeuwarder Courant met de vraag of er mensen waren die kinderen 'een rustige vacantie' wilden geven. Hierop kwamen veel reacties, waaruit een keuze werd gemaakt. Hij kwam ditmaal in Kollum (Friesland) terecht. De vierde uitzending, in december 1944, was naar Beilen (Drente) waar hij bij de dominee van de Nederlandse Protestanten Bond terecht kwam. Eind mei 1945, na de bevrijding, keerde hij terug naar huis. In juni 1946 maakt hij de reis naar Engeland in het kader van een uitzending. Geïnterviewde kijkt met plezier op de uitzendingen terug.&lt;/p&gt;
description: &lt;p&gt;Respondent 18. De beschrijvingen van de bijgevoegde foto's zitten in het document GV_Schiedam_gastgezin1_01c.&lt;br&gt;Bijlage vragenlijst archief Schiedam: Schiedamse kinderen op stap is het document GV_Schiedam_gastgezin1_01g.&lt;/p&gt;
DOI: 10.15468/dl.jhazaj
title: Occurrence Download

description: A dataset containing 1889 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Living Specimen)",
 "Geometry POLYGON((-9.44673 43.86401,-10.20598 34.91411,-2.15336 35.92644,5.04797 38.84838,4.01264 42.8977,-6.5708 44.02506,-9.44673 43.86401))",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Erebia zapateri, Erebia lefebvrei, Erebia hispania)"
 ]
}

 The dataset includes 1889 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025940-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17052888
title: Above 99.9% Fidelity Single-Qubit Gates, Two-Qubit Gates, and Readout in a Single Superconducting Quantum Device

description: Data and Analysis Notebook

This archive contains the datasets and Jupyter notebooks used to generate the figures for our manuscript:

"Above 99.9% Fidelity Single-Qubit Gates, Two-Qubit Gates, and Readout in a Single Superconducting Quantum Device" by F. Marxer, J. Mrożek et al., 2025.

The repository provides:  - NetCDF (`.nc`) files with processed data (saved using the `h5netcdf` backend).  - Jupyter notebooks for reproducing the main-text and supplementary figures.  

---

Citation

If you use this dataset or analysis code, please cite the associated paper and Zenodo record:

```Fabian Marxer, Jakub Mrożek, Joona Andersson, et al. (2025).Dataset and analysis notebooks for "Above 99.9% Fidelity Single-Qubit Gates, Two-Qubit Gates, and Readout in a Single Superconducting Quantum Device".Zenodo. https://doi.org/10.5281/zenodo.17052889```

---
DOI: 10.5281/zenodo.17052889
title: Above 99.9% Fidelity Single-Qubit Gates, Two-Qubit Gates, and Readout in a Single Superconducting Quantum Device

description: Data and Analysis Notebook

This archive contains the datasets and Jupyter notebooks used to generate the figures for our manuscript:

"Above 99.9% Fidelity Single-Qubit Gates, Two-Qubit Gates, and Readout in a Single Superconducting Quantum Device" by F. Marxer, J. Mrożek et al., 2025.

The repository provides:  - NetCDF (`.nc`) files with processed data (saved using the `h5netcdf` backend).  - Jupyter notebooks for reproducing the main-text and supplementary figures.  

---

Citation

If you use this dataset or analysis code, please cite the associated paper and Zenodo record:

```Fabian Marxer, Jakub Mrożek, Joona Andersson, et al. (2025).Dataset and analysis notebooks for "Above 99.9% Fidelity Single-Qubit Gates, Two-Qubit Gates, and Readout in a Single Superconducting Quantum Device".Zenodo. https://doi.org/10.5281/zenodo.17052889```

---
DOI: 10.15468/dl.5rgf33
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opuntia microdasys",
 "Country is Kenya",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025942-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t5pzse
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hantzschia amphioxyss, Hapalosiphon, Heteroleibleinia, , Hippodonta, Homoeothrix, Kirchneriella, Klebsormidium, Kobayasiella, Kobayasiella subtilissima, Lagerheimia, Lemnicola, , Luticola goeppertiana, Dorofeyukea, Lyngbya, Melosira, Melosira varians, Merismopedia, Micractinium, Micrasterias, Microcystis, Monoraphidium, Mougeotia, Navicula angusta, Navicula antonii, Navicula capitatoradiata, Navicula cincta, Navicula cryptocephala, Navicula cryptotenelloides, Navicula erifuga, Navicula germainii, Navicula gregaria, Navicula heimansioides, Navicula libonensis, Navicula longicephala, Navicula minima, Navicula, Navicula notha, Navicula radiosa, Navicula ranomafanensis, Navicula recens, Navicula reichardtiana, Navicula rhynchocephala, Navicula riediana, Navicula rostellata, Navicula schroeteri, Navicula symmetrica, Navicula tripunctata, Navicula trivialis, Navicula veneta, Navicula zanoni, Navicymbula, Nitzschia, , Nitzschia agnewii, , Nitzschia archibaldii, Nitzschia aurariae, Nitzschia capitellata, , Nitzschia closterium, Nitzschia desertorum, Nitzschia dissipata, Nitzschia etoshensis, Nitzschia filiformis, , , Nitzschia intermedia, Nitzschia irremissa, Nitzschia liebetruthii, , Nitzschia littorea, , , Nitzschia nana, Nitzschia pura, , Nitzschia recta, Nitzschia sublinearis, Nitzschia communis, Nostoc, Nostoc commune, Oedogonium, Oedogonium minus, Oocystis, Orthoseira, Oscillatoria, Oscillatoria princeps, Oscillatoria sancta, Oscillatoria tenuis, Oxyneis, Palmella, Pediastrum, Pediastrum duplex, Phacus, Phormidium, Pinnularia acrosphaeria, Pinnularia, )",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -23.2724,25.1306 -24.0715,25.5395 -24.0715,25.5395 -23.2724))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025943-250827131500795/datasets/export for details.
DOI: 10.15468/dl.cvyd86
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opuntia microdasys",
 "Country is Malawi",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025945-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17054238
title: Gradient engineering in proton exchange membrane fuel cell cathodes: an electrochemical study of charge transfer, mass transport, and Pt utilization
DOI: 10.5281/zenodo.17054239
title: Gradient engineering in proton exchange membrane fuel cell cathodes: an electrochemical study of charge transfer, mass transport, and Pt utilization
DOI: 10.15468/dl.23gv58
title: Occurrence Download

description: A dataset containing 48227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-96.79577895172241 28.333514904898895, -96.79856618188145 28.33378768807434, -96.80135999494635 28.33357401953629, -96.80405296595909 28.3328821168371, -96.80654155387758 28.331738589353932, -96.80873008847082 28.330187412667126, -96.81053445223087 28.328288233964205, -96.81188531499139 28.32611407429782, -96.81273079664055 28.323748516842343, -96.81303845584755 28.321282490053544, -96.81279652913969 28.318810770080812, -96.81201437387593 28.316428337338156, -96.8107220994774 28.314226727436484, -96.80896940248296 28.312290516558704, -96.80682365139204 28.31069407588084, -96.80436729570572 28.309498719058112, -96.80169469904148 28.308750351555666, -96.7989085177786 28.308477711309727, -96.79611576364123 28.308691267602207, -96.79342370037523 28.30938281996904, -96.79093573082652 28.3105258123681, -96.78874743108486 28.312076350680638, -96.78694288290423 28.31397488490594, -96.78559144452733 28.316148492107185, -96.78474508369835 28.318513673217776, -96.78443637559528 28.320979557077084, -96.7846772433757 28.323451389295414, -96.78545849089275 28.325834172370378, -96.78675014692146 28.328036317356194, -96.78850260906424 28.32997316660816, -96.79064854457569 28.33157025176368, -96.79310547587836 28.332766161051584, -96.79577895172241 28.333514904898895))",
 "Year is one of (2019, 2020, 2021, 2022, 2023, 2024, 2025)",
 "KingdomKey is one of (Animalia, Fungi, Plantae)"
 ]
}

 The dataset includes 48227 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025941-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4ycb4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alburnus schischkovi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025944-250827131500795/datasets/export for details.
DOI: 10.15468/dl.97stmg
title: Occurrence Download

description: A dataset containing 21644 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphibia",
 "Geometry POLYGON ((37.1382 2.0599, 28.1382 2.0599, 28.1382 -6.9401, 37.1382 -6.9401, 37.1382 2.0599))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)"
 ]
}

 The dataset includes 21644 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025946-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14513274
title: Prothrombotic state and hypofibrinolysis in patients after Fallot syndrome surgery

description: Tetralogy of Fallot (ToF) is the most common cyanotic congenital heart defect. Current guidelines do not recommend oral anticoagulation in asymptomatic adults with corrected ToF unless AF coexists, and only if stroke risk (CHA₂DS₂-VASc score) justifies it. The aim of the study was whether ToF patients present a prothrombotic state, which could increase the risk of thromboembolic events.

This pilot study included adult patients (>18 years) post-ToF repair, including those with paroxysmal or persistent AF (CHA₂DS₂-VASc = 0) not receiving anticoagulation.

All participants underwent a standardized clinical assessment, laboratory workup (CBC, lipid profile, creatinine, D-dimer, CRP, glucose using routine laboratory parameters; performed using BCS system, Siemens), and detailed analysis of the fibrin clot phenotype, assessed as described previously [1]. Plasma clot permeability (Ks) and clot lysis time (CLT) were assessed using established protocols with slight modifications. Thrombin generation potential was evaluated via calibrated automated thrombography (CAT), according to the manufacturer [1]. ELISA-based quantification of PAI-1 antigen (Hyphen) and von Willebrand factor (vWF; Abnova) were conducted to assess fibrinolytic inhibition and endothelial dysfunction, according to the manufacturer.

References: 

1. Ząbczyk M, Natorska J, Janion-Sadowska A, et al. Prothrombotic fibrin clot properties associated with NETs formation characterize acute pulmonary embolism patients with higher mortality risk. Sci Rep. 2020 Jul 10;10(1):11433.
DOI: 10.5281/zenodo.14513273
title: Prothrombotic state and hypofibrinolysis in patients after Fallot syndrome surgery

description: Tetralogy of Fallot (ToF) is the most common cyanotic congenital heart defect. Current guidelines do not recommend oral anticoagulation in asymptomatic adults with corrected ToF unless AF coexists, and only if stroke risk (CHA₂DS₂-VASc score) justifies it. The aim of the study was whether ToF patients present a prothrombotic state, which could increase the risk of thromboembolic events.

This pilot study included adult patients (>18 years) post-ToF repair, including those with paroxysmal or persistent AF (CHA₂DS₂-VASc = 0) not receiving anticoagulation.

All participants underwent a standardized clinical assessment, laboratory workup (CBC, lipid profile, creatinine, D-dimer, CRP, glucose using routine laboratory parameters; performed using BCS system, Siemens), and detailed analysis of the fibrin clot phenotype, assessed as described previously [1]. Plasma clot permeability (Ks) and clot lysis time (CLT) were assessed using established protocols with slight modifications. Thrombin generation potential was evaluated via calibrated automated thrombography (CAT), according to the manufacturer [1]. ELISA-based quantification of PAI-1 antigen (Hyphen) and von Willebrand factor (vWF; Abnova) were conducted to assess fibrinolytic inhibition and endothelial dysfunction, according to the manufacturer.

References: 

1. Ząbczyk M, Natorska J, Janion-Sadowska A, et al. Prothrombotic fibrin clot properties associated with NETs formation characterize acute pulmonary embolism patients with higher mortality risk. Sci Rep. 2020 Jul 10;10(1):11433.
DOI: 10.6084/m9.figshare.30052321
title: Supplementary Material for: “Islet-On-a-Chip” – a microfluidic system design for preservation of viability and function of human islets of Langerhans: a systematic review

description: Purpose: There are multiple designs of microfluidic devices to study islets of Langerhans in vitro. There is an ongoing debate which design of microfluidic device is optimal in maintaining highest viability and function of the islets in vitro. 
Methods. A systematic literature review was conducted to evaluate the most common designs used of microfluidic devices to culture human pancreatic islets in vitro. The review included the following microfluidic designs: microwell, hanging drop, hydrodynamic trap, encapsulation and hydrogel scaffolds. PubMed and Google Scholar databases were searched for all relevant studies (articles in English; case studies were excluded, reference period January 2013 – June 2023). Data on islet function (insulin stimulation index) and viability, duration of experiment, design of microfluidic device and type of cells in the experiment were collected. ANOVA was utilized for statistical analysis.
Results. A total of 1646 studies were identified in the electronic database search. There were 310 duplications, 1152 studies were excluded after the initial screening, additionally 143 studies were excluded after reading a full - text article. 41 studies were included in the final analysis. The highest viability was reported in hydrogel scaffold group - 97 % (one study), followed by hydrodynamic trap 93,0 % (± 4,2), microwell 89,2 % (± 10,1), encapsulation 88,7 % (± 6,3) accordingly. ANOVA showed no difference among the designs (F=0.434, df 3,29, p = 0.731). The highest insulin stimulation index was observed in hanging drop microfluidic devices 8,5 (± 4,9), followed by microwell 2,94 (± 1,1), hydrogel scaffolds 2,9 (± 0,6), hydrodynamic trap 2.09 (± 1,0), encapsulation 1.81 (± 1,0). After utilizing ANOVA test, significant differences among the mean values of ISI were observed (F=8,826 (df 3,35), p &lt;0,001)
Conclusion. Hydrogel scaffold design of microfluidic devices might be associated with the highest viability of islets, and islet function is best preserved by hanging drop systems. More research is needed to further investigate the optimal design for further islet viability and function in vitro.
DOI: 10.6084/m9.figshare.30052321.v1
title: Supplementary Material for: “Islet-On-a-Chip” – a microfluidic system design for preservation of viability and function of human islets of Langerhans: a systematic review

description: Purpose: There are multiple designs of microfluidic devices to study islets of Langerhans in vitro. There is an ongoing debate which design of microfluidic device is optimal in maintaining highest viability and function of the islets in vitro. 
Methods. A systematic literature review was conducted to evaluate the most common designs used of microfluidic devices to culture human pancreatic islets in vitro. The review included the following microfluidic designs: microwell, hanging drop, hydrodynamic trap, encapsulation and hydrogel scaffolds. PubMed and Google Scholar databases were searched for all relevant studies (articles in English; case studies were excluded, reference period January 2013 – June 2023). Data on islet function (insulin stimulation index) and viability, duration of experiment, design of microfluidic device and type of cells in the experiment were collected. ANOVA was utilized for statistical analysis.
Results. A total of 1646 studies were identified in the electronic database search. There were 310 duplications, 1152 studies were excluded after the initial screening, additionally 143 studies were excluded after reading a full - text article. 41 studies were included in the final analysis. The highest viability was reported in hydrogel scaffold group - 97 % (one study), followed by hydrodynamic trap 93,0 % (± 4,2), microwell 89,2 % (± 10,1), encapsulation 88,7 % (± 6,3) accordingly. ANOVA showed no difference among the designs (F=0.434, df 3,29, p = 0.731). The highest insulin stimulation index was observed in hanging drop microfluidic devices 8,5 (± 4,9), followed by microwell 2,94 (± 1,1), hydrogel scaffolds 2,9 (± 0,6), hydrodynamic trap 2.09 (± 1,0), encapsulation 1.81 (± 1,0). After utilizing ANOVA test, significant differences among the mean values of ISI were observed (F=8,826 (df 3,35), p &lt;0,001)
Conclusion. Hydrogel scaffold design of microfluidic devices might be associated with the highest viability of islets, and islet function is best preserved by hanging drop systems. More research is needed to further investigate the optimal design for further islet viability and function in vitro.
DOI: 10.6084/m9.figshare.30052324
title: Supplementary Material for: Rare Presentation of Spontaneous Transomental Hernia in an Elderly Oncology Patient: Diagnostic Vigilance and Surgical Management

description: Background
Transomental hernia (TOH) is a rare internal hernia, representing approximately 1–4% of all internal hernia cases. The spontaneous form, occurring in patients without a history of abdominal surgery or trauma, is exceptionally uncommon and presents a significant diagnostic challenge due to its nonspecific clinical features. TOH typically involves herniation of small bowel loops through a defect in the greater omentum.
Case Presentation
We report a case of spontaneous TOH in a 76-year-old male undergoing chemotherapy for synchronous primary malignancies—left lung adenocarcinoma and right renal cell carcinoma—who presented with features of intestinal obstruction. Contrast-enhanced computed tomography (CECT) suggested internal herniation with ischaemia. Intraoperative findings confirmed approximately 100 cm of small bowel incarcerated through a 3 cm defect in the right side of the greater omentum. Age-related omental atrophy, along with chemotherapy-induced mesenteric fibrosis, microvascular injury, and impaired regenerative capacity, likely contributed to the defect formation. An emergency midline laparotomy was performed, involving resection of the gangrenous bowel and the creation of a double-barrel enterostomy. Postoperatively, distal enteral refeeding was critical in electrolyte correction, nutritional support, and early recovery.
Discussion
TOH carries a high risk of strangulation and should be considered in elderly patients with bowel obstruction, even with no history of prior abdominal surgery, especially those receiving platinum-based chemotherapy.
Conclusion
Although rare, TOH should be included in the differential diagnosis of acute abdomen in elderly oncology patients, even without previous abdominal surgery. Timely surgical intervention is vital to reduce morbidity and optimize outcomes.
DOI: 10.6084/m9.figshare.30052324.v1
title: Supplementary Material for: Rare Presentation of Spontaneous Transomental Hernia in an Elderly Oncology Patient: Diagnostic Vigilance and Surgical Management

description: Background
Transomental hernia (TOH) is a rare internal hernia, representing approximately 1–4% of all internal hernia cases. The spontaneous form, occurring in patients without a history of abdominal surgery or trauma, is exceptionally uncommon and presents a significant diagnostic challenge due to its nonspecific clinical features. TOH typically involves herniation of small bowel loops through a defect in the greater omentum.
Case Presentation
We report a case of spontaneous TOH in a 76-year-old male undergoing chemotherapy for synchronous primary malignancies—left lung adenocarcinoma and right renal cell carcinoma—who presented with features of intestinal obstruction. Contrast-enhanced computed tomography (CECT) suggested internal herniation with ischaemia. Intraoperative findings confirmed approximately 100 cm of small bowel incarcerated through a 3 cm defect in the right side of the greater omentum. Age-related omental atrophy, along with chemotherapy-induced mesenteric fibrosis, microvascular injury, and impaired regenerative capacity, likely contributed to the defect formation. An emergency midline laparotomy was performed, involving resection of the gangrenous bowel and the creation of a double-barrel enterostomy. Postoperatively, distal enteral refeeding was critical in electrolyte correction, nutritional support, and early recovery.
Discussion
TOH carries a high risk of strangulation and should be considered in elderly patients with bowel obstruction, even with no history of prior abdominal surgery, especially those receiving platinum-based chemotherapy.
Conclusion
Although rare, TOH should be included in the differential diagnosis of acute abdomen in elderly oncology patients, even without previous abdominal surgery. Timely surgical intervention is vital to reduce morbidity and optimize outcomes.