cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23685921.v1
title: Plant survey data for: '<strong>Elevated CO2 interacts with nutrient inputs to restructure plant communities in phosphorus limited grasslands'</strong>

description: Dataset pertaining to manuscript entitled 'Elevated CO2 interacts with nutrient inputs to restructure plant communities in phosphorus limited grasslands' by C R Taylor <i>et al</i>. The excel sheets contain plant community composition surveys of two grassland types (acidic and limestone) from a mesocosm FACE experiment in the Peak District National Park, UK. Mesocosms have been extracted from a long-term nutrient manipulation experiment and exposed to 3 years of elevated CO2 (600 ppm) prior to surveys. Metadata is contained therein.
DOI: 10.20347/wias.data.7
title: Data and code from the paper "On loss functionals for physics-informed neural networks for convection-dominated convection-diffusion problems"
DOI: 10.5281/zenodo.10301394
title: Embracing data science in catalysis research

description: This dataset contains the main data compiled for the Review article on ML in catalysis.
DOI: 10.5281/zenodo.10301395
title: Embracing data science in catalysis research

description: This dataset contains the main data compiled for the Review article on ML in catalysis.
DOI: 10.5523/bris.2qtinf5lw52u52snyl5ruwekef
title: Puerto Rico Probability of Flood Inundation Maps

description: This data accompanies the paper: Archer, et al., (2023) 'Current and Future Rainfall-Driven Flood Risk 
From Hurricanes in Puerto Rico Under 1.5°C and 2°C Climate Change', Natural Hazards and Earth System Sciences.
This dataset is licensed under a Creative Commons "CC BY-NC 4.0" license.
DOI: 10.18454/rulb.2023.48.48.3
title: Длительность гласных звуков высказываний, в повествовании и вопросе с удивлением.

description: Russian Linguistic Bulletin, Выпуск 12 (48) 2023
DOI: 10.18454/rulb.2023.48.28.1
title: Первообразные свойства schön в роли дискурсивной частицы и прилагательного

description: Russian Linguistic Bulletin, Выпуск 12 (48) 2023
DOI: 10.18454/rulb.2023.48.25.1
title: Соотношение средств художественной выразительности с эмотивным содержанием в произведениях Сомерсета Моэма и Артура Шницлера

description: Russian Linguistic Bulletin, Выпуск 12 (48) 2023
DOI: 10.18454/rulb.2023.48.29.2
title: Описания сосудов-картинок

description: Russian Linguistic Bulletin, Выпуск 12 (48) 2023
DOI: 10.18454/rulb.2023.48.24.1
title: Трансформационный потенциал наречий на -weise

description: Russian Linguistic Bulletin, Выпуск 12 (48) 2023
DOI: 10.18454/rulb.2023.48.29.3
title: Описания-ожидания сосудов-картинок

description: Russian Linguistic Bulletin, Выпуск 12 (48) 2023
DOI: 10.18454/rulb.2023.48.21.1
title: Основные вепсские топодетерминанты и их перевод в составе частично русифицированных топонимов (полукалек)

description: Russian Linguistic Bulletin, Выпуск 12 (48) 2023
DOI: 10.18454/rulb.2023.48.24.2
title: Наречие и предложная группа в диахронии

description: Russian Linguistic Bulletin, Выпуск 12 (48) 2023
DOI: 10.18454/rulb.2023.48.21.2
title: Топонимы вепсского происхождения, содержащие фитонимы

description: Russian Linguistic Bulletin, Выпуск 12 (48) 2023
DOI: 10.25716/gude.0cha-dnxp
title: Data for Inflammatory biotype of ADHD is linked to chronic stress: a data-driven analysis of the inflammatory pro-teome

description: Protein Data and Grouping variable for the Article "Inflammatory biotype of ADHD is linked to chronic stress: a data-driven analysis of the inflammatory proteome" published in Translational Psychiatry
description: Protein Data and Grouping variable for the Article "Inflammatory biotype of ADHD is linked to chronic stress: a data-driven analysis of the inflammatory proteome" published in Translational Psychiatry. Protein data are NPX values, thus they do NOT indicate concentrations but rather relative quantification of proteins. The grouping variable is LIP= Low inflammatory potential and HIP= High inflammatory potential.
DOI: 10.34740/kaggle/dsv/7067391
title: UK National, US Mega Millions & Euro Lottery.
DOI: 10.5281/zenodo.10301346
title: Appendix for "Toward a New Era of Rapid Development: Assessing GPT-4-Vision's Capabilities in UML-Based Code Generation

description: This is an online appendix for the paper called "", submitted to LLM4CODE 2024.
The package contains:

The diagrams used in the study.
Some example prompts we used.
The results of source-code generation.
DOI: 10.5281/zenodo.10301347
title: Appendix for "Toward a New Era of Rapid Development: Assessing GPT-4-Vision's Capabilities in UML-Based Code Generation

description: This is an online appendix for the paper called "", submitted to LLM4CODE 2024.
The package contains:

The diagrams used in the study.
Some example prompts we used.
The results of source-code generation.
DOI: 10.6084/m9.figshare.21431943
title: Data in support of "Global and regional climate feedbacks in response to uniform warming and cooling"

description: This data supports the following publication:Ringer, M. A. et al. (2023). Global and regional climate feedbacks in repsonse to uniform warming and cooling. Accepted for publication in <i>J. Geophys. Res. Atmos.</i><b>tas_global_land_sea.csv</b>Global-mean, global-mean land and global-mean ocean <i>tas</i> values to enable the calculation of the quantities shown in Table 1.<br><b>toa_tas_global_amip.csv; toa_tas_global_amip_m4k.csv; toa_tas_global_amip_p4K.csv</b>Global-mean top-of-atmosphere radiation budget (<i>rsdt</i>,<i> rsut</i>,<i> rlut</i>,<i> rsutcs</i>,<i> rlutcs</i>) and <i>tas</i> values to enable the calculation of the feedbacks shown in Figure 2 and Table 2.<br><b>Fig_13a.csv</b>Zonal-mean u_850 values for the HadGEM3-GC31-LL <i>aqua</i>, <i>aqua-p4K</i> and <i>aqua-m4K</i> experiments shown in Fig. 13a.<br><b>Fig_13b.csv</b>Zonal-mean SW CRE values for the HadGEM3-GC31-LL <i>aqua</i>, <i>aqua-p4K</i> and <i>aqua-m4K</i> experiments shown in Fig. 13a<br><b>Fig14.csv</b>Zonal-mean SW and LW CRE feedbacks for the HadGEM3-GC31-LL <i>aqua-p4K</i> and <i>aqua-m4K</i> experiments enabling the reproduction of Fig. 14.<br><b>Fig16_amip_abrupt.csv</b>Global-mean SW and LW CRE and LW clear-sky feedbacks for the<i> abrupt-2xCO2</i>/<i>abrupt-0.5xCO2</i> and <i>amip-p4K</i>/<i>amip-m4K</i> experiments shown in Figure 16.<br><b>Fig16_solar.csv</b>Global-mean SW and LW CRE and LW clear-sky feedbacks for the<i> abrupt-solp4p</i>/<i>abrupt-solm4p </i>experiments shown in Figure 16.<br><br><br>
DOI: 10.34740/kaggle/dsv/7154487
title: 2021 World Population (updated daily)
DOI: 10.34740/kaggle/dsv/7154498
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.25345/c59g5gq83
title: MassIVE MSV000093606 - Differentiated and mature neurons are more responsive to neurotoxicant exposure at both transcriptional and translational levels
title: A comprehensive study showcasing the differential response of naive and fully differentiated SH-SY5Y cells under toxic arsenic insult.
DOI: 10.5281/zenodo.10302013
title: Dataset for the paper: The efficiency of the hard wood origin biochar addition on the PAHs bioavailability and stability in sediment Meta Data

description: Raw data for the desorption model used in the paper The efficiency of the hardwood origin biochar addition on the PAHs bioavailability and stability in sediment
DOI: 10.5281/zenodo.10302014
title: Dataset for the paper: The efficiency of the hard wood origin biochar addition on the PAHs bioavailability and stability in sediment Meta Data

description: Raw data for the desorption model used in the paper The efficiency of the hardwood origin biochar addition on the PAHs bioavailability and stability in sediment
DOI: 10.5517/ccdc.csd.cc2fsdh4
title: CCDC 2257776: Experimental Crystal Structure Determination

description: Related Article: Usha Yadav, Sanoop P. Chandrasekharan, Pravya P. Nair, Sanjeevni Harikumar, Kishor Mohanan|2023|Asian J.Org.Chem|12|e202300342|doi:10.1002/ajoc.202300342
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g2xfx
title: CCDC 2266919: Experimental Crystal Structure Determination

description: Related Article: Saroj Kumar Kushvaha, Paula Kallenbach, Shahnaz S. Rohman, Madhusudan K. Pandey, Zohreh Hendi, Franziska Rüttger, Regine Herbst-Irmer, Dietmar Stalke, Pattiyil Parameswaran, Herbert W. Roesky|2023|J.Am.Chem.Soc.|145|25523|doi:10.1021/jacs.3c09131
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10302239
title: The Use of Probability Web Panels in National Statistics
DOI: 10.5281/zenodo.10302240
title: The Use of Probability Web Panels in National Statistics
DOI: 10.5281/zenodo.7694422
title: Data set for (binary) text classification, involving spoken utterances and written text

description: This data set contains sentences belonging to either of two classes: Transcripts of spoken
(informal) text (Class 0), and written, formal text (Class 1). Sentences in Class 0 were
obtained from publicly available transcripts of radio shows (e.g. NPR),
whereas Sentences in Class 1 were obtained from Wikipedia.


The data set is divided into three subsets: Training, validation, and test (specified by the file names).
Each set contains a large number of sentences, belonging to either of the two classes:


In total, there are 13,640,458 sentences, of which 6,374,487 in Class 0 and 7,265,971.
The training set contains 9.743,188 sentences (of which 4,553,205 in Class 0 and 5,189,983 in Class 1), 
the validation set contains 1,948,639 sentences (of which 910,641 in Class 0 and 1,037,998 in Class 1), and the 
test set contains 1,948,631 sentences (of which 910,641 in Class0 and 1,037,990 in Class1). 


The data sets are in plain text format. Every row contains (i) the class label (0 or 1) and
(ii) the text of the sentence, separated from the class label by a tab character.


Note that the sentences contain 5 tokens or more (including punctuation marks).
DOI: 10.5281/zenodo.7694423
title: Data set for (binary) text classification, involving spoken utterances and written text

description: This data set contains sentences belonging to either of two classes: Transcripts of spoken
(informal) text (Class 0), and written, formal text (Class 1). Sentences in Class 0 were
obtained from publicly available transcripts of radio shows (e.g. NPR),
whereas Sentences in Class 1 were obtained from Wikipedia.


The data set is divided into three subsets: Training, validation, and test (specified by the file names).
Each set contains a large number of sentences, belonging to either of the two classes:


In total, there are 13,640,458 sentences, of which 6,374,487 in Class 0 and 7,265,971.
The training set contains 9.743,188 sentences (of which 4,553,205 in Class 0 and 5,189,983 in Class 1), 
the validation set contains 1,948,639 sentences (of which 910,641 in Class 0 and 1,037,998 in Class 1), and the 
test set contains 1,948,631 sentences (of which 910,641 in Class0 and 1,037,990 in Class1). 


The data sets are in plain text format. Every row contains (i) the class label (0 or 1) and
(ii) the text of the sentence, separated from the class label by a tab character.


Note that the sentences contain 5 tokens or more (including punctuation marks).
DOI: 10.14278/rodare.2596
title: Data publication: A continuous multiphase model for liquid metal batteries

description: Cycling data for experiment 3: Raw data, processed data and figures.
DOI: 10.14278/rodare.2597
title: Data publication: A continuous multiphase model for liquid metal batteries

description: Cycling data for experiment 3: Raw data, processed data and figures.
DOI: 10.14278/rodare.2602
title: Data publication: Effect of ISA and chloride on the uptake of niobium(V) by hardened cement paste and C-S-H phases: quantitative description and mechanistic understanding

description: This dataset is a report about gamma spectroscopy measurement of the irradiated cyclotron target generated by GammaVision software (ORTEC/AMETEK, Version 8.00.03).
DOI: 10.14278/rodare.2603
title: Data publication: Effect of ISA and chloride on the uptake of niobium(V) by hardened cement paste and C-S-H phases: quantitative description and mechanistic understanding

description: This dataset is a report about gamma spectroscopy measurement of the irradiated cyclotron target generated by GammaVision software (ORTEC/AMETEK, Version 8.00.03).
DOI: 10.5281/zenodo.10280300
title: A Bag-Of-Motif Model Captures Cell States at Distal Regulatory Sequences

description: The BOM distal cis-regulatory elements (CREs) datasets
 
This is the set of distal CRE data used in the Bag-Of-Motif paper. Datasets from the references below were processed as described in the BOM paper. Code for the BOM model is found here (https://github.com/ewonglab/BOM_package).
 
Mouse E8.25 scATAC-seq (Pijuan-Sala, B. et al.)
mouseE8.25_scATAC_cellTypeSpecific_Pijuan_Sala.B_etal_mm10.bed
mouseE8.25_scATAC_cellTypeSpecific_Pijuan_Sala.B_etal_mm10.fa
 
mouseE8.25_scATAC_topics_Pijuan_Sala.B_etal_mm10.bed
mouseE8.25_scATAC_topics_Pijuan_Sala.B_etal_mm10.fa
 
Mouse E8.5 etc (Argelaguet, R. et al.)
mouseE8.5_scATAC_cellTypeSpecific_Argelaguet.R_etal_mm10.bed
mouseE8.5_scATAC_cellTypeSpecific_Argelaguet.R_etal_mm10.fa
 
Human cell lines (Roadmap Epigenomics Consortium et al.)
humanCellLineSpecific_chromHMM_hg19.bed
humanCellLineSpecific_chromHMM_hg19.fa
 
Human fetal (Domcke, S. et al.)
humanFetal_scATAC_cellTypeSpecific_Domcke.S_etal_hg19.bed    
humanFetal_scATAC_cellTypeSpecific_Domcke.S_etal_hg19.fa
 
Human blood and bone marrow (Granja, J. M. et al.)
humanHematopoiesis_scATAC_cellTypeSpecific_Granja_J.M_etal_hg19.bed
humanHematopoiesis_scATAC_cellTypeSpecific_Granja_J.M_etal_hg19.fa
 
Adult zebrafish (Yang, H. et al.)
zebrafishAdult_ATAC_cellTypeSpecific_Yang_H_etal_danRer10.bed
zebrafishAdult_ATAC_cellTypeSpecific_Yang_H_etal_danRer10.fa
 
Fruit fly (Zabidi, M. A. et al.)
flySTARRseq_dev_hkp_activity_Zabidi_M.A_etal_dm3.bed
flySTARRseq_dev_hkp_activity_Zabidi_M.A_etal_dm3.fa
 

Pijuan-Sala, B. et al. Single-cell chromatin accessibility maps reveal regulatory programs driving early mouse organogenesis. Nat. Cell Biol. 22, 487–497 (2020).
Argelaguet, R. et al. Decoding gene regulation in the mouse embryo using single-cell multi-omics. 2022.06.15.496239 Preprint at https://doi.org/10.1101/2022.06.15.496239 (2022).
Roadmap Epigenomics Consortium et al. Integrative analysis of 111 reference human epigenomes. Nature 518, 317–330 (2015).
Domcke, S. et al. A human cell atlas of fetal chromatin accessibility. Science 370, (2020).
Granja, J. M. et al. Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia. Nat. Biotechnol. 37, 1458–1465 (2019).
Yang, H. et al. A map of cis-regulatory elements and 3D genome structures in zebrafish. Nature 588, 337–343 (2020).
Zabidi, M. A. et al. Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation. Nature 518, 556–559 (2015).
DOI: 10.5281/zenodo.10288202
title: Database obtained through numerical modelling comprising short-term vertical displacements around a shaft excavated in London Clay

description: The database was generated via finite element axisymmetric analysis of the excavation of a shaft in London Clay. It includes vertical displacements troughs around the shaft (from 0.1m to a radial distance equal to 2xShaft depth) extracted at depth intervals of 0.1xShaft depth, from the surface to the shaft depth.
DOI: 10.5281/zenodo.10288203
title: Database obtained through numerical modelling comprising short-term vertical displacements around a shaft excavated in London Clay

description: The database was generated via finite element axisymmetric analysis of the excavation of a shaft in London Clay. It includes vertical displacements troughs around the shaft (from 0.1m to a radial distance equal to 2xShaft depth) extracted at depth intervals of 0.1xShaft depth, from the surface to the shaft depth.
DOI: 10.23708/1ipjau
title: Wild plants coverage at the borders of six rice fields in western Burkina Faso (2017)

description: During a project focused on rice microbial biodiversity (root microbiome and pathogens), we performed a pluriannual and multi-site survey (see https://doi.org/10.23708/8FDWIE). Because microbial species may be shared between rice and surrounding wild plants, we chose to perform a small survey in 2017 in 6 rice fields. This dataset describes obtained data. It corresponds to a list of wild plant species identified in the borders of six rice fields (from three geographical zones in western Burkina Faso) during a survey performed in 2017. More specifically, the observations and sampling were performed during one day in each geographical zone: 26/10/2017 (Bama: 17BM02 and 17BL02), 28/10/2017 (Karfiguela: 17KA01 and 17KA01), 01/11/2017 (Banzon: 17BZ11 and 17SZ07). The precise location of each of these six fields appears in https://doi.org/10.23708/8FDWIE (file: Data_MP_Field_Location_dataset.tab). Three fields correspond to irrigated production system (BM02, BZ11, KA01) while the three others (BL02, SZ07, TG01) are in rainfed lowlands. The observations were performed on two consecutive borders of each rice fields. For each field and each wild plant species, the covering area was estimated: 0: absent; 0.5: rare; 1: covering area &lt; 10%; 2: covering area between 10% and 20%; 3: covering area between 20% and 30%. This information corresponds to the columns 3 to 8 in the dataset. In addition, samples from the five more frequent plant species have been collected for each field for further analyses. This led to a set of 30 samples, and a total of 26 different species. The wild plant species sampled are annotated with "X" in the columns 9 to 14 in the dataset.
DOI: 10.4121/f9d102ba-bf4d-4dae-b6ed-88985747ea2a
title: Data underlying the publication: Clonal Amplification-Enhanced Gene Expression in Synthetic Vesicles

description: Data behind the publication: 1. Abil, Z., Restrepo Sierra, A. M. & Danelon, C. Clonal Amplification-Enhanced Gene Expression in Synthetic Vesicles. ACS Synth. Biol. 12, 1187–1203 (2023).<br>The hereby provided research was designed and performed as part of the synthetic biology and BaSyc (NL) consortium efforts to build a synthetic cell from the bottom up. The dataset includes '.prism' files with the raw data utilized for constructing the figures from the above stated paper. Besides these files, the provided .zip files also contain raw data that includes both flow cytometry and confocal microscopy data. Each compressed file indicates to which figure(s) it should belong to and which type of data does it contain. Some folders (i.e., some of the ones with FACS data) also include a .MATLAB file with a small script connected to each file for easier visualization of the data. The confocal imaging data (if not in PNG) can be opened and analyzed with FIJI. The dataset also includes two separate MATLAB files labeled with 'SMELDit', two MATLAB scripts utilized for the analysis of confocal images from Fig. 6 of the above mentioned paper. The additional PDF labeled: MEP_thesis_Mats van Tongeren contains a more specific description and instructions on how to operate the program. Finally, the dataset also contains the SnapGene files with the different DNA sequences utilized on the experiments of the above mentioned paper.<br>If additional information is needed, please contact a.m.restreposierra@tudelft.nl or anasierra.93@gmail.com, or also the corresponding author of the paper: Christophe Danelon.
DOI: 10.4121/f9d102ba-bf4d-4dae-b6ed-88985747ea2a.v1
title: Data underlying the publication: Clonal Amplification-Enhanced Gene Expression in Synthetic Vesicles

description: Data behind the publication: 1. Abil, Z., Restrepo Sierra, A. M. & Danelon, C. Clonal Amplification-Enhanced Gene Expression in Synthetic Vesicles. ACS Synth. Biol. 12, 1187–1203 (2023).<br>The hereby provided research was designed and performed as part of the synthetic biology and BaSyc (NL) consortium efforts to build a synthetic cell from the bottom up. The dataset includes '.prism' files with the raw data utilized for constructing the figures from the above stated paper. Besides these files, the provided .zip files also contain raw data that includes both flow cytometry and confocal microscopy data. Each compressed file indicates to which figure(s) it should belong to and which type of data does it contain. Some folders (i.e., some of the ones with FACS data) also include a .MATLAB file with a small script connected to each file for easier visualization of the data. The confocal imaging data (if not in PNG) can be opened and analyzed with FIJI. The dataset also includes two separate MATLAB files labeled with 'SMELDit', two MATLAB scripts utilized for the analysis of confocal images from Fig. 6 of the above mentioned paper. The additional PDF labeled: MEP_thesis_Mats van Tongeren contains a more specific description and instructions on how to operate the program. Finally, the dataset also contains the SnapGene files with the different DNA sequences utilized on the experiments of the above mentioned paper.<br>If additional information is needed, please contact a.m.restreposierra@tudelft.nl or anasierra.93@gmail.com, or also the corresponding author of the paper: Christophe Danelon.
DOI: 10.34740/kaggle/dsv/7154834
title: COVID Vaccination in World (updated daily)
DOI: 10.6084/m9.figshare.23926593
title: Virus scaffolds reconstructed in the study "<b>Transmission and Dynamics of Mother-Infant Gut Viruses during Pregnancy and Early Life</b>" (LLNEXT_Pilot) and their metadata.

description: Virus genomes and genome fragments reconstructed in the study "<b>Transmission and Dynamics of Mother-Infant Gut Viruses during Pregnancy and Early Life</b>" (LLNEXT_Pilot) and their metadata.Briefly, present sequences were assembled from virus-like particles enriched fecal longitudinal samples of 30 women and their 32 infants from the Lifelines NEXT cohort prior to the extensive decontamination using reference and virus hallmark genes-based approaches.
DOI: 10.6084/m9.figshare.23926593.v2
title: Virus scaffolds reconstructed in the study "<b>Transmission and Dynamics of Mother-Infant Gut Viruses during Pregnancy and Early Life</b>" (LLNEXT_Pilot) and their metadata.

description: Virus genomes and genome fragments reconstructed in the study "<b>Transmission and Dynamics of Mother-Infant Gut Viruses during Pregnancy and Early Life</b>" (LLNEXT_Pilot) and their metadata.Briefly, present sequences were assembled from virus-like particles enriched fecal longitudinal samples of 30 women and their 32 infants from the Lifelines NEXT cohort prior to the extensive decontamination using reference and virus hallmark genes-based approaches.
DOI: 10.6084/m9.figshare.23926593.v1
title: Virus scaffolds reconstructed in the study "<b>Mother-Infant Gut Viruses and their Bacterial Hosts: Transmission Patterns and Dynamics during Pregnancy and Early Life</b>" (NEXT_Pilot) and their metadata.

description: Virus genomes and genome fragments reconstructed in the study "<b>Mother-Infant Gut Viruses and their Bacterial Hosts: Transmission Patterns and Dynamics during Pregnancy and Early Life</b>" (NEXT_Pilot) and their metadata.Briefly, present sequences were assembled from virus-like particles enriched fecal longitudinal samples of 30 mothers and their 32 infants from the Lifelines NEXT cohort prior to the extensive decontamination using reference and virus hallmark genes-based approaches.