cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13144/lil-0998
title: Impôt sur le revenu dans les communes de France - 2014

description: Présentation du nombre de foyers fiscaux, du montant de l'impôt, du revenu net moyen des foyers fiscaux de France entière au niveau communal. Les données datées de l'année 2014 correspondent à la taxation des revenus de l'année 2013, à la date du 31 décembre 2014. Les contribuables ayant leur domicile fiscal en France au niveau communal sont : les personnes qui ont leur foyer ou leur lieu de séjour principal dans une commune française, celles qui exercent en France le centre de leurs intérêts économiques, les agents de l'État qui exercent leurs fonctions dans un pays étranger où ils ne sont pas soumis à un impôt personnel sur leurs revenus.
DOI: 10.15468/dl.hbdkc2
title: Occurrence Download

description: A dataset containing 481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Opogona sacchari (Bojer, 1856)"
 ]
}

 The dataset includes 481 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000699-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d2cdbv
title: Occurrence Download

description: A dataset containing 930 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geomalacus maculosus Allman, 1843"
 ]
}

 The dataset includes 930 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029166-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bucg33
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zospeum biscaiense Gómez & Prieto, 1983"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029167-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fm64yp
title: Occurrence Download

description: A dataset containing 325 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Norelona pyrenaica (Draparnaud, 1805)"
 ]
}

 The dataset includes 325 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029169-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.svt5jw
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "Issue is one of (Continent derived from coordinates, Continent invalid, Coordinate reprojected, Coordinate rounded, Depth min max swapped, Country derived from coordinates, Depth non numeric, Depth not metric, Depth unlikely, Elevation min max swapped, Elevation non numeric, Elevation not metric, Elevation unlikely, Identified date invalid, Identified date unlikely, Modified date invalid, Modified date unlikely, Recorded date invalid, Recorded date mismatch, Recorded date unlikely, Occurrence status inferred from individual count, Georeferenced date unlikely, Georeferenced date invalid, ccurrence status inferred from basis of record)",
 "TaxonKey is Eragrostis micrantha Hack.",
 "Continent is Africa"
 ]
}

 The dataset includes 154 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029168-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxsy4q
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Napaeus esbeltus Ibáñez & M.R.Alonso, 1995"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029170-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ec8mbc
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allognathus graellsianus (L.Pfeiffer, 1848)"
 ]
}

 The dataset includes 80 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029171-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ug4fs
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "Issue is one of (Continent derived from coordinates, Continent invalid, Coordinate reprojected, Coordinate rounded, Depth min max swapped, Country derived from coordinates, Depth non numeric, Depth not metric, Depth unlikely, Elevation min max swapped, Elevation non numeric, Elevation not metric, Elevation unlikely, Identified date invalid, Identified date unlikely, Modified date invalid, Modified date unlikely, Recorded date invalid, Recorded date mismatch, Recorded date unlikely, Occurrence status inferred from individual count, Georeferenced date unlikely, Georeferenced date invalid, ccurrence status inferred from basis of record)",
 "TaxonKey is Eragrostis microsperma Rendle",
 "Continent is Africa"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029172-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qsgkvf
title: Occurrence Download

description: A dataset containing 592 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "Issue is one of (Continent derived from coordinates, Continent invalid, Coordinate reprojected, Coordinate rounded, Depth min max swapped, Country derived from coordinates, Depth non numeric, Depth not metric, Depth unlikely, Elevation min max swapped, Elevation non numeric, Elevation not metric, Elevation unlikely, Identified date invalid, Identified date unlikely, Modified date invalid, Modified date unlikely, Recorded date invalid, Recorded date mismatch, Recorded date unlikely, Occurrence status inferred from individual count, Georeferenced date unlikely, Georeferenced date invalid, ccurrence status inferred from basis of record)",
 "TaxonKey is Eragrostis nindensis Ficalho & Hiern",
 "Continent is Africa"
 ]
}

 The dataset includes 592 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029174-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j92dj4
title: Occurrence Download

description: A dataset containing 179 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acropora globiceps (Dana, 1846)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 179 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029175-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.stdvj7
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arianta xatartii (Farines, 1834)"
 ]
}

 The dataset includes 96 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029176-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvnkrs
title: Occurrence Download

description: A dataset containing 260 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "Issue is one of (Continent derived from coordinates, Continent invalid, Coordinate reprojected, Coordinate rounded, Depth min max swapped, Country derived from coordinates, Depth non numeric, Depth not metric, Depth unlikely, Elevation min max swapped, Elevation non numeric, Elevation not metric, Elevation unlikely, Identified date invalid, Identified date unlikely, Modified date invalid, Modified date unlikely, Recorded date invalid, Recorded date mismatch, Recorded date unlikely, Occurrence status inferred from individual count, Georeferenced date unlikely, Georeferenced date invalid, ccurrence status inferred from basis of record)",
 "TaxonKey is Eragrostis pallens Hack.",
 "Continent is Africa"
 ]
}

 The dataset includes 260 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029177-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbbjsr
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chilostoma desmoulinsii bechi (Altimira, 1959)"
 ]
}

 The dataset includes 18 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029178-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n86jwz
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Isopora crateriformis (Gardiner, 1898)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 73 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029179-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czxnkg
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cryptosaccus asturiensis Prieto & Puente, 1994"
 ]
}

 The dataset includes 20 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029180-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7916/d8-801t-yg44
title: Temperature-Salinity Data from mooring M3, northwest Weddell Sea, 1999-2019

description: This project maintains an array of oceanographic moorings south of the South Orkney Islands in the Northwest Weddell Sea to provide a time series of the properties of the combined outflow of Antarctic Deep and Bottom Water drawn from various sites within the Weddell Sea. The goal of this project is to observe the properties of the Weddell deep and bottom waters as they exit the Weddell system. The data obtained over the course of a decade and more can be used to better understand deep water formation and long term changes in ocean circulation and their relation to the climate system.
DOI: 10.5281/zenodo.13835641
title: Reviving diversity: cryoprotectants and culturing methods enhance recovery of mammalian gut microbes from field samples

description: Welcome!

Here you will find the codes used in the analysis we ran for our manuscript titled "Reviving diversity: cryoprotectants and culturing methods enhance recovery of mammalian gut microbes from field samples". We would be happy to help in way we can, so please do not hesitate to reach out if you have questions or suggestions.

In summary, we developed this study in response to challenges encountered in our own field research. Recent advancements in culturomics and microbiology are enabling us to further explore the realm of microbiome science. We aspire for this study to serve as a foundational step toward identifying preservation methods that can help protect the microbial communities of wild animals.

Our study aims are:



The primary objective of this study was to evaluate the effectiveness of various preservation solutions in maintaining microbial integrity of gut samples during collection and for a short duration, simulating transportation conditions, prior to long-term storage at -80°C. We cultivated the samples in three distinct culture media to maximize the recovery of microbial diversity.

The second objective was to compare the inventory of the preserved and cultured microbial community to that of the original uncultured samples, aiming to determine whether the preservation solutions retained unique taxa absent in the frozen original samples.


Notes to keep in mind:



We chose preservation solutions that have already been described for microbial culturing.

We chose culture media that have already been described for microbial culturing, especially gut microbiome samples.


As you go through the Rmd document included here, please make sure all documents have been properly downloaded. Additionally, please make sure to change the names of the alpha diversity metric files in the Rmd to that of the files here as they were modified for proper uploading methods here.
DOI: 10.5281/zenodo.13835642
title: Reviving diversity: cryoprotectants and culturing methods enhance recovery of mammalian gut microbes from field samples

description: Welcome!

Here you will find the codes used in the analysis we ran for our manuscript titled "Reviving diversity: cryoprotectants and culturing methods enhance recovery of mammalian gut microbes from field samples". We would be happy to help in way we can, so please do not hesitate to reach out if you have questions or suggestions.

In summary, we developed this study in response to challenges encountered in our own field research. Recent advancements in culturomics and microbiology are enabling us to further explore the realm of microbiome science. We aspire for this study to serve as a foundational step toward identifying preservation methods that can help protect the microbial communities of wild animals.

Our study aims are:



The primary objective of this study was to evaluate the effectiveness of various preservation solutions in maintaining microbial integrity of gut samples during collection and for a short duration, simulating transportation conditions, prior to long-term storage at -80°C. We cultivated the samples in three distinct culture media to maximize the recovery of microbial diversity.

The second objective was to compare the inventory of the preserved and cultured microbial community to that of the original uncultured samples, aiming to determine whether the preservation solutions retained unique taxa absent in the frozen original samples.


Notes to keep in mind:



We chose preservation solutions that have already been described for microbial culturing.

We chose culture media that have already been described for microbial culturing, especially gut microbiome samples.


As you go through the Rmd document included here, please make sure all documents have been properly downloaded. Additionally, please make sure to change the names of the alpha diversity metric files in the Rmd to that of the files here as they were modified for proper uploading methods here.
DOI: 10.15468/dl.szdc76
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helicella zaratei E.Gittenberger & Manga, 1977"
 ]
}

 The dataset includes 19 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029181-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1921507671
title: Crystallographic studies of natural, mutant and artificial metalloenzymes and metalloproteins

description: We want to use high-resolution crystallography to continue or do new fundamental research on: 1) the oxygen-sensitivity of metalloenzymes and metalloproteins; 2)
maturation proteins involved in the biosynthesis of metal sites in hydrogenases and nitrogenase; 3) SAM radical enzymes; 4) the biological assembly of iron-sulfur
clusters; 5) the role of quinolinate synthase in NAD biosynthesis; 6) transduction of signals like oxygen and NO by Fe-S cluster-dependent transcriptional regulators.
Our main goal is to understand the structure-function relationships of these proteins and to decipher their mechanisms. More distant goals include the design and
production of improved enzymes, facilitating their use for biotechnological applications.
DOI: 10.15468/dl.pvh273
title: Occurrence Download

description: A dataset containing 305 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "Issue is one of (Continent derived from coordinates, Continent invalid, Coordinate reprojected, Coordinate rounded, Depth min max swapped, Country derived from coordinates, Depth non numeric, Depth not metric, Depth unlikely, Elevation min max swapped, Elevation non numeric, Elevation not metric, Elevation unlikely, Identified date invalid, Identified date unlikely, Modified date invalid, Modified date unlikely, Recorded date invalid, Recorded date mismatch, Recorded date unlikely, Occurrence status inferred from individual count, Georeferenced date unlikely, Georeferenced date invalid, ccurrence status inferred from basis of record)",
 "TaxonKey is Eragrostis patens Oliv.",
 "Continent is Africa"
 ]
}

 The dataset includes 305 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029182-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fkz6n9
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Montserratina bofilliana (Fagot, 1884)"
 ]
}

 The dataset includes 68 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029183-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7916/d8-evk7-7p14
title: GIS Data for Spring 2017 Historic Preservation Studio

description: Student-collected data as part of the Spring 2017 Historic Preservation studio titled, “Past as Prologue: Preservation as a Tool for Social Inclusion in Poughkeepsie, New York,” at the Columbia Graduate School of Architecture, Planning, and Preservation. Includes shapefiles for building footprints, water elements, National Register designations, building use-related survey results, and studio recommendations including trolley route.
DOI: 10.15468/dl.kg544p
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Montserratina martorelli (Bourguignat, 1870)"
 ]
}

 The dataset includes 131 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029184-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zyg4mn
title: Occurrence Download

description: A dataset containing 179 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acropora globiceps (Dana, 1846)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 179 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029187-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fgq8ec
title: Occurrence Download

description: A dataset containing 2565 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Passive eDNA collection enhances aquatic biodiversity analysis, Australia (2019)",
 "Geometry POLYGON((118.03122 -39.19568,131.64379 -39.19568,131.64379 -29.4547,118.03122 -29.4547,118.03122 -39.19568))"
 ]
}

 The dataset includes 2565 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029186-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwxqaz
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plentuisa vendia Puente & Prieto, 1992"
 ]
}

 The dataset includes 19 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029188-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26030/wekg-g113
title: Quantitative evaluation of bioaerosols in different particle size fractions collected on the International Space Station (ISS)

description: Exposure to bioaerosols can negatively impact human health. On the International Space Station (ISS) this exposure differs to that on Earth due to lack of gravitational settling and differing microbial sources. It is unknown how microbes are influenced by different particle size fractions in microgravity. The goal of this study is to identify the microbial communities on different particle size fractions taken from the ISS.
DOI: 10.15468/dl.qawsuu
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "Issue is one of (Continent derived from coordinates, Continent invalid, Coordinate reprojected, Coordinate rounded, Depth min max swapped, Country derived from coordinates, Depth non numeric, Depth not metric, Depth unlikely, Elevation min max swapped, Elevation non numeric, Elevation not metric, Elevation unlikely, Identified date invalid, Identified date unlikely, Modified date invalid, Modified date unlikely, Recorded date invalid, Recorded date mismatch, Recorded date unlikely, Occurrence status inferred from individual count, Georeferenced date unlikely, Georeferenced date invalid, ccurrence status inferred from basis of record)",
 "TaxonKey is Eragrostis patentipilosa Hack.",
 "Continent is Africa"
 ]
}

 The dataset includes 100 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029189-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.detnbr
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pyrenaearia daanidentata Raven, 1988"
 ]
}

 The dataset includes 8 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029190-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.