cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1306892.v1
title: 27-28 June 2014 Time-Lapse Sequence

description: 27-28 June 2014 - Complete sequence of visible and short-wave infrared (SWIR) Reconyx HC600 HyperFire trail camera images using both the motion sensor and time-lapse to trigger the camera. Known animals such as deer and birds are visible moving through the scene. Unknown animals appear in images 370, 386, 458, and 459. GPS coordinates of the camera are latitude N 40 deg 09.276 min longitude W 074 deg 08.905 min. The camera is attached to a large tree at the eastern edge of the cleared area underneath the power transmission lines and with a view across Squankum Brook and toward the Firing Range Road at an approximate orientation of 290 deg magnetic.
DOI: 10.6084/m9.figshare.1306864
title: HymHub v0.0.1: a data resource supporting social insect comparative genomics research

description: The file <strong>summary-stats.tar.bz2</strong> contains tables of summary statistics describing various genomic features from 13 Hymenopteran species and outgroups. The other files contain the sequence and annotation files from which the summary statistics were computed, organized by species. See the links below for more details.
DOI: 10.6084/m9.figshare.1306861
title: Effect of missing data on topological inference using a total evidence approach

description: To fully understand macroevolutionary patterns and processes, we need to include both extant and extinct species in our models. This requires phylogenetic trees with both living and fossil taxa at the tips. One way to infer such phylogenies is the Total Evidence approach which uses molecular data from living taxa and morphological data from living and fossil taxa.<br>Although the Total Evidence approach is very promising, it requires a great deal of data that can be hard to collect. Therefore this method is likely to suffer from missing data issues that may affect its ability to infer correct phylogenies.<br>Here we use simulations to assess the effects of missing data on tree topologies inferred from Total Evidence matrices. We investigate three major factors that directly affect the completeness and the size of the morphological part of the matrix: the proportion of living taxa with no morphological data, the amount of missing data in the fossil record, and the overall number of morphological characters in the matrix. We infer phylogenies from complete matrices and from matrices with various amounts of missing data, and then compare missing data topologies to the "best" tree topology inferred using the complete matrix.<br>We find that the number of living taxa with morphological characters and the overall number of morphological characters in the matrix, are more important than the amount of missing data in the fossil record for recovering the "best" tree topology. Therefore, we suggest that sampling effort should be focused on morphological data collection for living species to increase the accuracy of topological inference in a Total Evidence framework. Additionally, we find that Bayesian methods consistently outperform other tree inference methods. We therefore recommend using Bayesian consensus trees to fix the tree topology prior to further analyses.
DOI: 10.6084/m9.figshare.1306864.v1
title: HymHub v0.0.1: a data resource supporting social insect comparative genomics research

description: The file <strong>summary-stats.tar.bz2</strong> contains tables of summary statistics describing various genomic features from 13 Hymenopteran species and outgroups. The other files contain the sequence and annotation files from which the summary statistics were computed, organized by species. See the links below for more details.
DOI: 10.6084/m9.figshare.1306639
title: PUBLIC CONSORTIUM AS AN INSTRUMENT OF THE ASSOCIATED MANAGEMENT WITH A VIEW TO ENVIRONMENTAL SUSTAINABILITY IN THE LIGHT OF THE ONES INVOLVED

description: The aim of this article is to analyzethe public consortium as an instrument of cooperative federalism. The preservation of the environment is a commitment and responsibility of all (federal people, entrepeneurs and civil society) so as to preserve<br>our habitat. The success of this action depends on the cooperation or common associated management based on a sustainable planning. As a result of it, the public consortium is analyzed in its legal result aspects, which prove its importance in the<br>management of human, logistic and economical resources to the realization of the common objective interests. As a counterpoint, it will be shown the implications or difficultiesimplied in the formation of public consortium having the cooperative federalism and the associated management as a basis. It will be also discussed the advantages of this associated management in the development, control and supervision of the civil service exercised by the associated people with a view to reaching sustainability.
DOI: 10.6084/m9.figshare.1306861.v1
title: Effect of missing data on topological inference using a total evidence approach

description: To fully understand macroevolutionary patterns and processes, we need to include both extant and extinct species in our models. This requires phylogenetic trees with both living and fossil taxa at the tips. One way to infer such phylogenies is the Total Evidence approach which uses molecular data from living taxa and morphological data from living and fossil taxa.<br>Although the Total Evidence approach is very promising, it requires a great deal of data that can be hard to collect. Therefore this method is likely to suffer from missing data issues that may affect its ability to infer correct phylogenies.<br>Here we use simulations to assess the effects of missing data on tree topologies inferred from Total Evidence matrices. We investigate three major factors that directly affect the completeness and the size of the morphological part of the matrix: the proportion of living taxa with no morphological data, the amount of missing data in the fossil record, and the overall number of morphological characters in the matrix. We infer phylogenies from complete matrices and from matrices with various amounts of missing data, and then compare missing data topologies to the "best" tree topology inferred using the complete matrix.<br>We find that the number of living taxa with morphological characters and the overall number of morphological characters in the matrix, are more important than the amount of missing data in the fossil record for recovering the "best" tree topology. Therefore, we suggest that sampling effort should be focused on morphological data collection for living species to increase the accuracy of topological inference in a Total Evidence framework. Additionally, we find that Bayesian methods consistently outperform other tree inference methods. We therefore recommend using Bayesian consensus trees to fix the tree topology prior to further analyses.
DOI: 10.6084/m9.figshare.1306639.v1
title: PUBLIC CONSORTIUM AS AN INSTRUMENT OF THE ASSOCIATED MANAGEMENT WITH A VIEW TO ENVIRONMENTAL SUSTAINABILITY IN THE LIGHT OF THE ONES INVOLVED

description: The aim of this article is to analyzethe public consortium as an instrument of cooperative federalism. The preservation of the environment is a commitment and responsibility of all (federal people, entrepeneurs and civil society) so as to preserve<br>our habitat. The success of this action depends on the cooperation or common associated management based on a sustainable planning. As a result of it, the public consortium is analyzed in its legal result aspects, which prove its importance in the<br>management of human, logistic and economical resources to the realization of the common objective interests. As a counterpoint, it will be shown the implications or difficultiesimplied in the formation of public consortium having the cooperative federalism and the associated management as a basis. It will be also discussed the advantages of this associated management in the development, control and supervision of the civil service exercised by the associated people with a view to reaching sustainability.
DOI: 10.6084/m9.figshare.1306623
title: Investigation of the stereochemical course of ene reductase-catalysed reactions by deuterium labelling

description: The stereoselective reduction of suitably substituted C═C bonds mediated by enzymes, called ene reductases, has received great attention in the last decade. Some successful applications of this biocatalysed procedure to the synthesis of chiral active pharmaceutical ingredients have been reported in the literature. The generation of suitable models to be used for predicting the stereochemical outcome of this kind of reductions is a challenging task. In the last years we have exploited deuterium labelling to investigate the stereochemical course of the enzyme-mediated reductions of a wide collection of substrates belonging to well-defined chemical classes. The results of this research have allowed us to draw conclusions on the relationship between the structural characteristics of the substrate and the binding mode it adopts in the enzyme active site. The collected data can be exploited to create an empirical model to rationalise and predict the stereoselectivity of old yellow enzyme (OYE)-catalysed reductions.
DOI: 10.6084/m9.figshare.1306623.v2
title: Investigation of the stereochemical course of ene reductase-catalysed reactions by deuterium labelling

description: The stereoselective reduction of suitably substituted C═C bonds mediated by enzymes, called ene reductases, has received great attention in the last decade. Some successful applications of this biocatalysed procedure to the synthesis of chiral active pharmaceutical ingredients have been reported in the literature. The generation of suitable models to be used for predicting the stereochemical outcome of this kind of reductions is a challenging task. In the last years we have exploited deuterium labelling to investigate the stereochemical course of the enzyme-mediated reductions of a wide collection of substrates belonging to well-defined chemical classes. The results of this research have allowed us to draw conclusions on the relationship between the structural characteristics of the substrate and the binding mode it adopts in the enzyme active site. The collected data can be exploited to create an empirical model to rationalise and predict the stereoselectivity of old yellow enzyme (OYE)-catalysed reductions.
DOI: 10.6084/m9.figshare.1306623.v1
title: Investigation of the stereochemical course of ene reductase-catalysed reactions by deuterium labelling

description: The stereoselective reduction of suitably substituted C═C bonds mediated by enzymes, called ene reductases, has received great attention in the last decade. Some successful applications of this biocatalysed procedure to the synthesis of chiral active pharmaceutical ingredients have been reported in the literature. The generation of suitable models to be used for predicting the stereochemical outcome of this kind of reductions is a challenging task. In the last years we have exploited deuterium labelling to investigate the stereochemical course of the enzyme-mediated reductions of a wide collection of substrates belonging to well-defined chemical classes. The results of this research have allowed us to draw conclusions on the relationship between the structural characteristics of the substrate and the binding mode it adopts in the enzyme active site. The collected data can be exploited to create an empirical model to rationalise and predict the stereoselectivity of old yellow enzyme (OYE)-catalysed reductions.
DOI: 10.6084/m9.figshare.1306593
title: Analysis of mixed biofilm (<i>Staphylococcus aureus</i> and <i>Pseudomonas aeruginosa)</i> by laser ablation electrospray ionization mass spectrometry

description: <i>Pseudomonas aeruginosa</i> and <i>Staphylococcus aureus</i> are ubiquitous pathogens often found together in polymicrobial, biofilm-associated infections. This study is the first to use laser ablation electrospray ionization mass spectrometry (LAESI-MS) to rapidly study bacteria within a mixed biofilm. Fast, direct, non-invasive LAESI-MS analysis of biofilm could significantly accelerate biofilm studies and provide previously unavailable information on both biofilm composition and the effects of antibiofilm treatment. LAESI-MS was applied directly to a polymicrobial biofilm and analyzed with respect to whether <i>P. aeruginosa</i> and <i>S. aureus</i> were co-localized or self-segregated within the mixed biofilm. LAESI-MS was also used to analyze ions following LL-37 antimicrobial peptide treatment of the biofilm. This ambient ionization method holds promise for future biofilm studies. The use of this innovative technique has profound implications for the study of biofilms, as LAESI-MS eliminates the need for lengthy and disruptive sample preparation while permitting rapid analysis of unfixed and wet biofilms.
DOI: 10.6084/m9.figshare.1306593.v2
title: Analysis of mixed biofilm (<i>Staphylococcus aureus</i> and <i>Pseudomonas aeruginosa)</i> by laser ablation electrospray ionization mass spectrometry

description: <i>Pseudomonas aeruginosa</i> and <i>Staphylococcus aureus</i> are ubiquitous pathogens often found together in polymicrobial, biofilm-associated infections. This study is the first to use laser ablation electrospray ionization mass spectrometry (LAESI-MS) to rapidly study bacteria within a mixed biofilm. Fast, direct, non-invasive LAESI-MS analysis of biofilm could significantly accelerate biofilm studies and provide previously unavailable information on both biofilm composition and the effects of antibiofilm treatment. LAESI-MS was applied directly to a polymicrobial biofilm and analyzed with respect to whether <i>P. aeruginosa</i> and <i>S. aureus</i> were co-localized or self-segregated within the mixed biofilm. LAESI-MS was also used to analyze ions following LL-37 antimicrobial peptide treatment of the biofilm. This ambient ionization method holds promise for future biofilm studies. The use of this innovative technique has profound implications for the study of biofilms, as LAESI-MS eliminates the need for lengthy and disruptive sample preparation while permitting rapid analysis of unfixed and wet biofilms.
DOI: 10.6084/m9.figshare.1306593.v1
title: Analysis of mixed biofilm (<i>Staphylococcus aureus</i> and <i>Pseudomonas aeruginosa)</i> by laser ablation electrospray ionization mass spectrometry

description: <i>Pseudomonas aeruginosa</i> and <i>Staphylococcus aureus</i> are ubiquitous pathogens often found together in polymicrobial, biofilm-associated infections. This study is the first to use laser ablation electrospray ionization mass spectrometry (LAESI-MS) to rapidly study bacteria within a mixed biofilm. Fast, direct, non-invasive LAESI-MS analysis of biofilm could significantly accelerate biofilm studies and provide previously unavailable information on both biofilm composition and the effects of antibiofilm treatment. LAESI-MS was applied directly to a polymicrobial biofilm and analyzed with respect to whether <i>P. aeruginosa</i> and <i>S. aureus</i> were co-localized or self-segregated within the mixed biofilm. LAESI-MS was also used to analyze ions following LL-37 antimicrobial peptide treatment of the biofilm. This ambient ionization method holds promise for future biofilm studies. The use of this innovative technique has profound implications for the study of biofilms, as LAESI-MS eliminates the need for lengthy and disruptive sample preparation while permitting rapid analysis of unfixed and wet biofilms.
DOI: 10.6084/m9.figshare.1306564
title: Age and nature of the late Early Cretaceous Zhaga Formation, northern Tibet: constraints on when the Bangong–Nujiang Neo-Tethys Ocean closed

description: This article reports the depositional environment, provenance, and U–Pb zircon age constraints for the newly identified Zhaga Formation in northern Tibet and uses these to better understand the tectonic evolution of the Bangong–Nujiang suture. One transect across the Zhaga Formation was investigated. The Zhaga Formation is ~2 km thick, dominated by greywacke and conglomerate at the base, basalt and limestone in the middle, and greywacke and shale at the top. Greywacke in the Zhaga Formation typically contains 70–75% quartz, 5% feldspar, 3–5% rock debris, and &gt;15% matrix, with normal grading and convolute bedding, basal flow structures, and distinct Bouma sequences interpreted as bathyal to abyssal turbidites. One rhyolite sample and one greywacke sample from the studied transect were collected for zircon U–Pb dating. The rhyolite yields a concordia age of 118 Ma, and the greywacke yields nine age peaks of 247, 330, 459, 541, 611, 941, 1590, 1871, and 2482 Ma, indicating that the Zhaga Formation formed during the late Early Cretaceous and the provenance of its detritus was the Qiangtang area. These data, combined with the Early Cretaceous ocean islands, indicates that the Bangong–Nujiang Neo-Tethys Ocean must have been open during the late Early Cretaceous. We conclude that the Bangong–Nujiang Neo-Tethys Ocean closed after the late Early Cretaceous and not during the Late Jurassic or the early Early Cretaceous as proposed by previous workers.
DOI: 10.6084/m9.figshare.1306564.v2
title: Age and nature of the late Early Cretaceous Zhaga Formation, northern Tibet: constraints on when the Bangong–Nujiang Neo-Tethys Ocean closed

description: This article reports the depositional environment, provenance, and U–Pb zircon age constraints for the newly identified Zhaga Formation in northern Tibet and uses these to better understand the tectonic evolution of the Bangong–Nujiang suture. One transect across the Zhaga Formation was investigated. The Zhaga Formation is ~2 km thick, dominated by greywacke and conglomerate at the base, basalt and limestone in the middle, and greywacke and shale at the top. Greywacke in the Zhaga Formation typically contains 70–75% quartz, 5% feldspar, 3–5% rock debris, and &gt;15% matrix, with normal grading and convolute bedding, basal flow structures, and distinct Bouma sequences interpreted as bathyal to abyssal turbidites. One rhyolite sample and one greywacke sample from the studied transect were collected for zircon U–Pb dating. The rhyolite yields a concordia age of 118 Ma, and the greywacke yields nine age peaks of 247, 330, 459, 541, 611, 941, 1590, 1871, and 2482 Ma, indicating that the Zhaga Formation formed during the late Early Cretaceous and the provenance of its detritus was the Qiangtang area. These data, combined with the Early Cretaceous ocean islands, indicates that the Bangong–Nujiang Neo-Tethys Ocean must have been open during the late Early Cretaceous. We conclude that the Bangong–Nujiang Neo-Tethys Ocean closed after the late Early Cretaceous and not during the Late Jurassic or the early Early Cretaceous as proposed by previous workers.
DOI: 10.6084/m9.figshare.1306562
title: Data of retentive forces of mandibular advancement device BluePro<sup>®</sup>

description: Sample parameters used for the different tests.
DOI: 10.6084/m9.figshare.1306564.v1
title: Age and nature of the late Early Cretaceous Zhaga Formation, northern Tibet: constraints on when the Bangong–Nujiang Neo-Tethys Ocean closed

description: This article reports the depositional environment, provenance, and U–Pb zircon age constraints for the newly identified Zhaga Formation in northern Tibet and uses these to better understand the tectonic evolution of the Bangong–Nujiang suture. One transect across the Zhaga Formation was investigated. The Zhaga Formation is ~2 km thick, dominated by greywacke and conglomerate at the base, basalt and limestone in the middle, and greywacke and shale at the top. Greywacke in the Zhaga Formation typically contains 70–75% quartz, 5% feldspar, 3–5% rock debris, and &gt;15% matrix, with normal grading and convolute bedding, basal flow structures, and distinct Bouma sequences interpreted as bathyal to abyssal turbidites. One rhyolite sample and one greywacke sample from the studied transect were collected for zircon U–Pb dating. The rhyolite yields a concordia age of 118 Ma, and the greywacke yields nine age peaks of 247, 330, 459, 541, 611, 941, 1590, 1871, and 2482 Ma, indicating that the Zhaga Formation formed during the late Early Cretaceous and the provenance of its detritus was the Qiangtang area. These data, combined with the Early Cretaceous ocean islands, indicates that the Bangong–Nujiang Neo-Tethys Ocean must have been open during the late Early Cretaceous. We conclude that the Bangong–Nujiang Neo-Tethys Ocean closed after the late Early Cretaceous and not during the Late Jurassic or the early Early Cretaceous as proposed by previous workers.
DOI: 10.6084/m9.figshare.1306217
title: The associations between smoking habits and serum triglyceride or hemoglobin A1c levels differ according to visceral fat accumulation

description: Both smoking habits and VFA exhibited associations with serum TG and HbA1c concentrations. The associations between smoking habits and these parameters differed according to VFA. Among the subjects with large VFA, the TG concentrations of the current smokers and former smokers were higher than those of the non-smokers.
DOI: 10.6084/m9.figshare.1306562.v1
title: Data of retentive forces of mandibular advancement device BluePro<sup>®</sup>

description: Sample parameters used for the different tests.
DOI: 10.6084/m9.figshare.1306069
title: The associations between smoking habits and serum triglyceride or hemoglobin A1c levels differ according to visceral fat accumulation

description: Both smoking habits and VFA exhibited associations with serum TG and HbA1c concentrations. The associations between smoking habits and these parameters differed according to VFA. Among the subjects with large VFA, the TG concentrations of the current smokers and former smokers were higher than those of the non-smokers.
DOI: 10.6084/m9.figshare.1306217.v1
title: The associations between smoking habits and serum triglyceride or hemoglobin A1c levels differ according to visceral fat accumulation

description: Both smoking habits and VFA exhibited associations with serum TG and HbA1c concentrations. The associations between smoking habits and these parameters differed according to VFA. Among the subjects with large VFA, the TG concentrations of the current smokers and former smokers were higher than those of the non-smokers.
DOI: 10.6084/m9.figshare.1305840
title: Database_GDM_Tianjin

description: Database for "Prevalence of gestational diabetes mellitus and its risk factors in Chinese pregnant women: a prospective population-based study in Tianjin, China" to be published in PLOS ONE.
DOI: 10.6084/m9.figshare.1305966
title: Sample Atropos Segmentation

description: Sample segmentation output from Atropos segmentation tool in ANTs.
DOI: 10.6084/m9.figshare.1306069.v1
title: The associations between smoking habits and serum triglyceride or hemoglobin A1c levels differ according to visceral fat accumulation

description: Both smoking habits and VFA exhibited associations with serum TG and HbA1c concentrations. The associations between smoking habits and these parameters differed according to VFA. Among the subjects with large VFA, the TG concentrations of the current smokers and former smokers were higher than those of the non-smokers.