cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25387/g3.11653461
title: Supplemental Material for Gamez et al., 2020

description: Figure 1 Global dynamics of gene expression.Figure 2 Soft clustering and principal component analysis on <i>Ae. albopictus</i> genes. Figure 3 Orthology analysis of <i>Ae. aegypti</i> and <i>Ae. albopictus</i> samples across corresponding developmental time points.Figure S1 Read mapping statistics and read count data across all developmental stages.Figure S2 Expression dynamics of protein genes involved in miRNA, siRNA and piRNA pathways.Figure S3 E-value score distribution for best reciprocal BLAST hits for <i>Ae. aegypt</i>i and <i>Ae. albopictus </i>orthologs.Figure S4 Sample correlations of each developmental time point between <i>Ae. aegypti</i> and <i>Ae. albopictus.</i>Figure S5 MA plots depicting expression of orthologous genes in sex specific tissues.Figure S6 MA plots depicting expression of orthologous genes in blood-fed female ovaries and carcasses at different 12-hr time points.Figure S7 MA plots depicting expression of orthologous genes during embryogenesis of <i>Ae. albopictus</i> compared to <i>Ae. aegypti</i>. Figure S8 MA plots depicting expression of orthologous genes in the larval instars and diapause samples of <i>Ae. albopictus</i> compared to <i>Ae. aegypti</i>. Table S1 Summary of sequenced datasets. Table S2 Gene descriptions of <i>Ae. albopictus</i> loci. Table S3 Read mapping analysis of <i>Ae. albopictus</i> transcripts. Table S4 Detected counts, TPM, and FPKM of each developmental stage. Table S5 Complete developmental transcriptome transcripts of <i>Ae. albopictus</i>. Table S6 Pearson correlation matrix. Table S7 Gene ontology enrichment analysis of <i>Ae. albopictus</i> clusters 1 through 20. Table S8 AALF genes mFuzz cluster membership and descriptions. Table S9 Female-biased genes. Table S10 Male-biased genes. Table S11 Genes involved in small RNA production. Table S12 Best reciprocal hits orthology between <i>Ae. albopictus</i> and <i>Ae. aegypti</i>. Table S13 Count summary of <i>Ae. albopictus</i> reads mapping to orthologs. Table S14 Pearson correlation values of <i>Ae. aegypti </i>and <i>Ae. albopictus </i>at each developmental stage. Table S15 Upregulated genes in <i>Ae. aegypti</i> and <i>Ae. albopictus </i>expressed orthologs. Table S16 <i>Ae. aegypti-Ae. albopictus</i> male testes and carcass raw DESeq2 results. Table S17 <i>Ae. aegypti-Ae. albopictus</i> pupae raw DESeq2 results. Table S18 <i>Ae. aegypti-Ae. albopictus</i> female NBF and PBM ovary DESeq2 results. Table S19 <i>Ae. aegypti-Ae. albopictus</i> female NBF and PBM carcass DESeq2 results. Table S20 <i>Ae. aegypti-Ae. albopictus</i> embryogenesis DESeq2 results. Table S21 <i>Ae. aegypti-Ae. albopictus</i> larval stages and diapause raw DESeq2 results.File S1 Script for processing count data produced by featureCountsFile S2 Script used for parsing out BLAST outputFile S3 Script used to identify best reciprocal match
DOI: 10.5258/soton/d0735
title: Dataset for 'A 40dB Gain all Fiber Bismuth-doped Amplifier Operating in the O-band'
DOI: 10.5281/zenodo.3572716
title: MD Simulations HsGluN1/GluN2A WT/F553A

description: Molecular dynamics simulation of the HsGluN1/GluN2A WT and F553A (GluN2A) mutant
DOI: 10.5281/zenodo.3572717
title: MD Simulations HsGluN1/GluN2A WT/F553A

description: Molecular dynamics simulation of the HsGluN1/GluN2A WT and F553A (GluN2A) mutant
DOI: 10.5281/zenodo.3610256
title: Deep splicing plasticity of the human adenovirus type 5 transcriptome as a driver of virus evolution nanopore data 48hpi

description: Adenovirus infected MRC5 cells direct RNA sequencing of the mRNA using nanopore. From the paper Deep splicing plasticity of the human adenovirus type 5 transcriptome as a driver of virus evolution. Both the uncorrected fastq files and the lordec corrected files together with the normalised illumina data used to correct the nanpore data are here.
DOI: 10.5281/zenodo.3610257
title: Deep splicing plasticity of the human adenovirus type 5 transcriptome as a driver of virus evolution nanopore data 48hpi

description: Adenovirus infected MRC5 cells direct RNA sequencing of the mRNA using nanopore. From the paper Deep splicing plasticity of the human adenovirus type 5 transcriptome as a driver of virus evolution. Both the uncorrected fastq files and the lordec corrected files together with the normalised illumina data used to correct the nanpore data are here.
DOI: 10.7910/dvn/lo2qzm/nyvzks
title: TWHya_CS_32_M0.fits

description: Zeroth moment map of the CS (5-4) emission made with bettermoments (-clip 3 --nomask).
DOI: 10.5285/90cde9d9-bc80-41d4-8102-d3d0bb58a029
title: Observations of supraglacial lakes on the Larsen B ice shelf in the decades before it collapsed, 1979-2002

description: This dataset provides the data produced as part of the work published in: Leeson, A. A., Foster, E., Rice, A., Gourmelen, N. and van Wessem, J. M.. 2019. 'Evolution of supraglacial lakes on the Larsen B ice shelf in the decades before it collapsed' Geophysical Research Letters. It includes 1) shapefiles of supraglacial lakes mapped in both optical (Landsat) and SAR (ERS) satellite imagery, 2) rasters of lake depth, derived from Landsat TM and ETM+ images acquired in 1988 and 2000 and 3) shapefiles of the study area considered in the paper. Funding was provided by ERPSRC grant EP/R01860X/1.
description: Under embargo until publication.
description: Horizontal resolution is nominally 30 m, since this is the resolution of the satellite imagery from which the data is derived. See Leeson et al., 2019 for details.
description: Under embargo until publication.
DOI: 10.5519/qd.332rpdb5
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (11 records)
DOI: 10.5286/isis.e.rb1920057-1
title: Exploring the Catalytic Pathway of Butane Isomerisation

description: The petrochemical industry accounts for a large proportion of global chemical industry, as such even subtle improvements in product yield can result in significant economic and environmental benefits. This has led to significant investigation into microporous solid acid catalysts, such as zeolites and aluminophosphates, which are used for many key petrochemical processes. Isobutane is the only natural gas liquid manufactured from another natural gas liquid; n-butane, thus butane isomerisation is a key reaction in petrochemical processing. We intend to observe interactions between n-butane (reactant), isobutane (product) and a C8 species (intermediate) and a Zeolite catalyst (Mordenite) to focus on acid-substrate interactions. This will be complemented by observing a quenched reaction mixture (prepared offline) to contrast with the prepared mixtures to look at the catalytic pathway.
DOI: 10.7910/dvn/9m6ehs/6yyctd
title: Raw data code book.tab

description: Excel file with all data labels of the raw data, together with the associated questions and units
DOI: 10.5284/1058979
title: Nethercote, Great Wolford, Warwickshire. Archaeological Evaluation. (OASIS ID: oxfordar1-374846)

description: Oxford Archaeology carried out a four-trench evaluation on the proposed site of a sewage treatment works extension for Severn Trent PLC. The evaluation did not reveal any archaeological deposits other than ploughed out ridge and furrow cultivation of probable late medieval date on land belonging to the deserted village of Nethercote. No finds were recovered.
DOI: 10.5286/isis.e.rb2010486
title: Towards an improved understanding of the interaction of methanol over zeolite catalysts

description: Is room temperature methoxylation possible? The Methanol-to-Hydrocarbons reaction converts methanol to gasoline grade hydrocarbons via a solid acid catalyst (e.g. ZSM-5 and SAPO-34). Through previous experiments, INS has been used to characteristic the form of the 'hydrocarbon pool' that facilitates reaction. However, how the first hydrocarbons are produced is not fully understood. It is reported that methanol first methoxylates at temperatures above 200C to give surface methoxy species, which then reacts further. More recently, INS has indicated that this reaction could be taking place at room temperature. This proposal seeks to further develop our understanding of how methanol initially adsorbs on a sample of pre-treated ZSM-5 and SAPO-34. Comparisons between the two samples will discern how different degrees of surface acidity perturb low temperature methanol adsorption/reaction.
DOI: 10.5286/isis.e.rb2010486-1
title: Towards an improved understanding of the interaction of methanol over zeolite catalysts

description: Is room temperature methoxylation possible? The Methanol-to-Hydrocarbons reaction converts methanol to gasoline grade hydrocarbons via a solid acid catalyst (e.g. ZSM-5 and SAPO-34). Through previous experiments, INS has been used to characteristic the form of the 'hydrocarbon pool' that facilitates reaction. However, how the first hydrocarbons are produced is not fully understood. It is reported that methanol first methoxylates at temperatures above 200C to give surface methoxy species, which then reacts further. More recently, INS has indicated that this reaction could be taking place at room temperature. This proposal seeks to further develop our understanding of how methanol initially adsorbs on a sample of pre-treated ZSM-5 and SAPO-34. Comparisons between the two samples will discern how different degrees of surface acidity perturb low temperature methanol adsorption/reaction.
DOI: 10.17894/ucph.5351d84b-2f06-4157-b001-6dc17e75cb23
title: Entanglement of Propagating Optical Modes via a Mechanical Interface Source and Raw Data
DOI: 10.5286/isis.e.rb2010255
title: INS study of multifunctional zeolites for catalytic conversion of methanol to propene

description: Efficient synthesis of light olefins from renewable resources remains a major challenge. We request 6 days on MAPS to carry out inelastic neutron scattering (INS) study of a multifunctional zeolite catalyst (TaAlS-1: Ta-doped MFI zeolite) for the highly selective conversion of methanol to propene. The proposed study will investigate the vibrational spectroscopy (e.g., C-H and O-H stretching modes) of the catalyst, adsorption of guest molecules (methanol and dimethyl ether) and any possible reaction intermediates (e.g., alkenes) on catalyst surface. In particular, this study aims to reveal the roles of Ta(V) sites and Si-O(H)-Al groups in the binding to guest molecules and in the catalytic reactions. This recently-discovered multifunctional catalyst (unpublished) exhibit record high selectivity of propene and propene/ethene ratio for methanol conversion.
DOI: 10.5286/isis.e.rb2010255-1
title: INS study of multifunctional zeolites for catalytic conversion of methanol to propene

description: Efficient synthesis of light olefins from renewable resources remains a major challenge. We request 6 days on MAPS to carry out inelastic neutron scattering (INS) study of a multifunctional zeolite catalyst (TaAlS-1: Ta-doped MFI zeolite) for the highly selective conversion of methanol to propene. The proposed study will investigate the vibrational spectroscopy (e.g., C-H and O-H stretching modes) of the catalyst, adsorption of guest molecules (methanol and dimethyl ether) and any possible reaction intermediates (e.g., alkenes) on catalyst surface. In particular, this study aims to reveal the roles of Ta(V) sites and Si-O(H)-Al groups in the binding to guest molecules and in the catalytic reactions. This recently-discovered multifunctional catalyst (unpublished) exhibit record high selectivity of propene and propene/ethene ratio for methanol conversion.
DOI: 10.5066/p9zh3r4g
title: Increasing rates of carbon burial in southwest Florida coastal wetlands

description: This data set represents vertical accretion data from feldspar marker horizons in Rookery Bay National Estuarine Research Reserve and Ten Thousand Islands National Wildlife Refuge collected between 1989 and 2017 associated with the publication 'Increasing rates of carbon burial in southwest Florida coastal wetlands.'
DOI: 10.5281/zenodo.3620856
title: weecology/PortalData 2.8.0

description: Official Repo of the Portal Project Data
DOI: 10.21227/58s2-2236
title: ExoNet Database: Wearable Camera Images of Human Locomotion Environments

description: Advances in robotic vision and artificial intelligence have enabled researchers to develop environment recognition systems for lower-limb exoskeletons and prostheses. However, insufficient and private training datasets have impeded the widespread development and dissemination of image classification algorithms. To address these shortcomings, we have developed the ExoNet Database, the first open-source database of high-quality wearable RGB camera images of human locomotion environments. Using a lightweight wearable smartphone camera system, over 5.6 million images of indoor and outdoor real-world walking environments were collected throughout summer, autumn, and winter seasons. Approximately 940,000 images of ExoNet Database were human-annotated using a 12-classs hierarchical image classification architecture. Images were uploaded to IEEE DataPort and are publicly available for download. The ExoNet Database offers an unprecedented shared platform for training, developing, and comparing next-generation image classification algorithms. Beyond the control of lower-limb exoskeletons and prostheses, applications extend to other assistive technologies (e.g., powered wheelchairs) and humanoids and autonomous legged robotics.Reference: Laschowski B, McNally W, Wong A, and McPhee J. (2020). ExoNet Database: Wearable Camera Images of Human Locomotion Environments. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. In Preparation.
DOI: 10.25345/c5xh5z
title: MassIVE MSV000084824 - Guam Melophlus sponge submission to MassIVE database
title: The peak list files for the Melophlus sponges collected from Guam will be submitted to MassIVE database.
DOI: 10.21227/b5te-ha70
title: ExoNet Database: Wearable Camera Images of Human Locomotion Environments

description: Advances in robotic vision and artificial intelligence have enabled researchers to develop environment recognition systems for lower-limb exoskeletons and prostheses. However, insufficient and private training datasets have impeded the widespread development and dissemination of image classification algorithms. To address these shortcomings, we have developed the ExoNet Database, the first open-source database of high-quality wearable RGB camera images of human locomotion environments. Using a lightweight wearable smartphone camera system, over 5.6 million images of indoor and outdoor real-world walking environments were collected throughout summer, autumn, and winter seasons. Approximately 940,000 images of ExoNet Database were human-annotated using a 12-classs hierarchical image classification architecture. Images were uploaded to IEEE DataPort and are publicly available for download. The ExoNet Database offers an unprecedented shared platform for training, developing, and comparing next-generation image classification algorithms. Beyond the control of lower-limb exoskeletons and prostheses, applications can extend to other assistive technologies (e.g., powered wheelchairs) and humanoids and autonomous legged robotics.Reference: Laschowski B, McNally W, Wong A, and McPhee J. (2020). ExoNet Database: Wearable Camera Images of Human Locomotion Environments. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. In Preparation.
DOI: 10.25387/g3.11653461.v1
title: Supplemental Material for Gamez et al., 2020

description: Figure 1 Global dynamics of gene expression.Figure 2 Soft clustering and principal component analysis on <i>Ae. albopictus</i> genes. Figure 3 Orthology analysis of <i>Ae. aegypti</i> and <i>Ae. albopictus</i> samples across corresponding developmental time points.Figure S1 Read mapping statistics and read count data across all developmental stages.Figure S2 Expression dynamics of protein genes involved in miRNA, siRNA and piRNA pathways.Figure S3 E-value score distribution for best reciprocal BLAST hits for <i>Ae. aegypt</i>i and <i>Ae. albopictus </i>orthologs.Figure S4 Sample correlations of each developmental time point between <i>Ae. aegypti</i> and <i>Ae. albopictus.</i>Figure S5 MA plots depicting expression of orthologous genes in sex specific tissues.Figure S6 MA plots depicting expression of orthologous genes in blood-fed female ovaries and carcasses at different 12-hr time points.Figure S7 MA plots depicting expression of orthologous genes during embryogenesis of <i>Ae. albopictus</i> compared to <i>Ae. aegypti</i>. Figure S8 MA plots depicting expression of orthologous genes in the larval instars and diapause samples of <i>Ae. albopictus</i> compared to <i>Ae. aegypti</i>. Table S1 Summary of sequenced datasets. Table S2 Gene descriptions of <i>Ae. albopictus</i> loci. Table S3 Read mapping analysis of <i>Ae. albopictus</i> transcripts. Table S4 Detected counts, TPM, and FPKM of each developmental stage. Table S5 Complete developmental transcriptome transcripts of <i>Ae. albopictus</i>. Table S6 Pearson correlation matrix. Table S7 Gene ontology enrichment analysis of <i>Ae. albopictus</i> clusters 1 through 20. Table S8 AALF genes mFuzz cluster membership and descriptions. Table S9 Female-biased genes. Table S10 Male-biased genes. Table S11 Genes involved in small RNA production. Table S12 Best reciprocal hits orthology between <i>Ae. albopictus</i> and <i>Ae. aegypti</i>. Table S13 Count summary of <i>Ae. albopictus</i> reads mapping to orthologs. Table S14 Pearson correlation values of <i>Ae. aegypti </i>and <i>Ae. albopictus </i>at each developmental stage. Table S15 Upregulated genes in <i>Ae. aegypti</i> and <i>Ae. albopictus </i>expressed orthologs. Table S16 <i>Ae. aegypti-Ae. albopictus</i> male testes and carcass raw DESeq2 results. Table S17 <i>Ae. aegypti-Ae. albopictus</i> pupae raw DESeq2 results. Table S18 <i>Ae. aegypti-Ae. albopictus</i> female NBF and PBM ovary DESeq2 results. Table S19 <i>Ae. aegypti-Ae. albopictus</i> female NBF and PBM carcass DESeq2 results. Table S20 <i>Ae. aegypti-Ae. albopictus</i> embryogenesis DESeq2 results. Table S21 <i>Ae. aegypti-Ae. albopictus</i> larval stages and diapause raw DESeq2 results.File S1 Script for processing count data produced by featureCountsFile S2 Script used for parsing out BLAST outputFile S3 Script used to identify best reciprocal match
DOI: 10.21227/7j2w-m355
title: ExoNet Database: Wearable Camera Images of Human Locomotion Environments

description: Advances in robotic vision and artificial intelligence have enabled researchers to develop environment recognition systems for lower-limb exoskeletons and prostheses. However, insufficient and private training datasets have impeded the widespread development and dissemination of image classification algorithms. To address these shortcomings, we have developed the ExoNet Database, the first open-source database of high-quality wearable RGB camera images of human locomotion environments. Using a lightweight wearable smartphone camera system, over 5.6 million images of indoor and outdoor real-world walking environments were collected throughout summer, autumn, and winter seasons. Approximately 940,000 images of ExoNet Database were human-annotated using a 12-classs hierarchical image classification architecture. Images were uploaded to IEEE DataPort and are publicly available for download. The ExoNet Database offers an unprecedented shared platform for training, developing, and comparing next-generation image classification algorithms. Beyond the control of lower-limb exoskeletons and prostheses, applications extend to other assistive technologies (e.g., powered wheelchairs) and humanoids and autonomous legged robotics.Reference: Laschowski B, McNally W, Wong A, and McPhee J. (2020). ExoNet Database: Wearable Camera Images of Human Locomotion Environments. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. In Preparation.
DOI: 10.5519/qd.7lhhbxxg
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (4497543 records)
DOI: 10.5258/soton/d1200
title: Dataset supporting "Fused: Closed-Loop Performance and Energy Simulation of Embedded Systems"
DOI: 10.7910/dvn/rskawd/iprah6
title: airpotentials.h

description: :unav
DOI: 10.25405/data.ncl.11676423
title: Multi-stage MFC 4-Nitrophenol Detection data

description: Data including images of reactors and sludge from MFCs; measurements of VFAs, carbon, anions, FTIR from samples and MFC electrical measurements. 4-nitrophenol concentrations and values pertaining to toxicity tests. Community analysis results including NMDS.
DOI: 10.5281/zenodo.3620728
title: RF Models

description: Trained RF model on Kepler McQuillan stars used to predict rotation periods from various features. Use <em>Astraea</em> to run the classifier. More description see https://astraea.readthedocs.io
DOI: 10.5281/zenodo.3620729
title: RF Models

description: Trained RF model on Kepler McQuillan stars used to predict rotation periods from various features. Use <em>Astraea</em> to run the classifier. More description see https://astraea.readthedocs.io
DOI: 10.5284/1058977
title: Land at Middle Hill, Chalford, Gloucestershire: Magnetometer Survey Report (OASIS ID: archaeol20-369553)

description: Detailed magnetometry was carried out over a 1.4ha parcel of land at Middle Hill, Chalford in Gloucestershire. The north eastern part of the field has been outlined for a potential residential development covering 0.8ha. The results indicate the presence of a possible former track or footpath extending through the south eastern corner of the site. A number of positive and negative linear anomalies have also been located; however, the majority of these relate to low and shallow features seen within LiDAR data imagery. Numerous and widespread discrete positive and curvilinear responses relate to soil filled features within the underlying shallow geology.
DOI: 10.7910/dvn/cfnugf/3g52dg
title: Epiperipatus_TRINITY_NOmtRNA.fasta

description: Trinity-assembled transcriptome of the onychophoran (n=1)
DOI: 10.7910/dvn/cfnugf/6qphbb
title: Echiniscus_testudo_TRINITY.fasta

description: Trinity-assembled transcriptome of the tardigrade Echiniscus testudo (n=20)
DOI: 10.7910/dvn/cfnugf/cgdzlt
title: Richtersius_coronifer_copenhagen_TRINITY.fasta

description: Trinity-assembled transcriptome of the tardigrade Richtersius cf. coronifer using raw reads from NCBI SRA SRX4213802
DOI: 10.7910/dvn/cfnugf/h7eeas
title: Paragordius_varius_TRINITY.fasta

description: Trinity-assembled transcriptome of the nematomorph Paragordius varius using raw reads from NCBI SRA ERX1879698
DOI: 10.7910/dvn/cfnugf/vcvlao
title: Mesobiotus_philippinicus_TRINITY.fasta

description: Trinity-assembled transcriptome of the tardigrade Mesobiotus philippinicus (n=1)