cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/tzjdqo
title: Deeper earthquake focal points result in higher magnitude earthquakes

description: Introduction: The depth-focal points of earthquakes can determine the likelihood of how light or strong, in terms of magnitude, an earthquake is likely to be. This may be a factor in determining where or how critical-infrastructure buildings, such as hospitals or prisons, can be better built to withstand stronger earthquakes, should they lie on or near deeper-earthquake starting focal points.
Objectives: The primary objective of this project is to see if there is a correlation between earthquake depth and intensity of earthquakes in both Northern and Southern California, using a sample data of earthquakes from the last 20 years. With the same data available, our secondary objective will be to compare the number and intensities of earthquakes for Northern and Southern California.
Methods: Upon obtaining the dataset of earthquakes from the Incorporated Research Institutions for Seismology (IRIS), we will query earthquakes greater than 4.0, and within the last 20 years. IRIS provides a map visual of the area of interest for data to be downloaded. In this case, we will zoom into the western United States. OpenRefine (v. 3.5) will be used to filter only earthquakes in Northern California and Southern California, by applying a text facet to the data. Descriptive analysis will be displayed using Tableau to see if there are any correlations, as well as to make comparisons between Northern and Southern California.
Results: As a result of plotting the data, we can see that there is a statistically slight positive relationship between earthquake depth and magnitude. The majority of the smaller earthquakes seem to suggest that they have a more-shallow focal point as compared to the larger earthquakes, which have a deeper focal point. 
Conclusions: Critical infrastructure, as well as general housing, should be avoided in areas where deeper earthquakes are likely to occur, as these most likely will result in stronger, more-intense earthquakes.
description: The dataset used for analysis is provided along with the original source and JSON file of the OpenRefine cleaning process. The research protocol and report are included for greater understanding and use of the dataset.
DOI: 10.7910/dvn/8vcttn
title: Replication Data for: Adversarial Anchoring in Bargaining

description: Replication data for Adversarial Anchoring in Bargaining
DOI: 10.7910/dvn/tyvvy2
title: Replication data for: "Knowledge Access: The Effects of Carnegie Libraries on Innovation"

description: The data and backup for "Knowledge Access: The Effects of Carnegie Libraries on Innovation"
description: Volume XX, Issue X
DOI: 10.7910/dvn/u66lrl
title: Replication Data for: Understanding Ambivalent Sexism and its Relationship with Electoral Choice in Britain

description: The paper uses two data-sets, the first is W1-W19 of the British Election Study, this data-set is publicly available via the BES website - we here provide an abridged version of the data that contains only the variables used in the analyses presented in the paper and supplement. The second data-set was collected with support from the Elections, Public Opinion and Parties (EPOP) section of the Political Studies Association
DOI: 10.7910/dvn/745pk1
title: Islam and Mass Preferences towards Foreign Direct Investment in Tunisia

description: Are globalization and Islam in conflict with one another in the eyes of Muslims? Does support for globalization fall or increase when it embraces or challenges Islamic dress, prayer, and other practices? We examine through different experimental tests how Tunisians react to globalization in the form of foreign direct investment in their country when it accommodates or conflicts with Islamic norms. Using three original sources of data, including a large representative survey (N=4986) of Tunisian citizens, a conjoint survey experiment (N=1502), and an original survey experiment with experimental social vignettes (N=504), we examine how threats (and non-threats) from FDI to Islamic norms affect support for FDI. On average, we find strong support for FDI, but these levels of support aren’t stable. We find the support for FDI falls by almost 32% if it is seen to clash with female Islamic dress. Support is highest when it accommodates Islamic practices, especially the female hijab and lowest when it is perceived to disregard these practices.
DOI: 10.7910/dvn/tyfunl
title: A99_12105.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/af53f3af-37d6-a4a9-97f6-e6dbe793c05b'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/af53f3af-37d6-a4a9-97f6-e6dbe793c05b
DOI: 10.7910/dvn/tqblwz
title: End of Term 2016 U.S. Government Twitter Archive

description: &lt;p&gt;This dataset contains the tweet ids of 5,655,632 tweets that were collected from approximately 3000 Twitter accounts affiliated with the U.S. government. They were collected between October 21, 2016 and January 21, 2017 from the Twitter API using Social Feed Manager. This dataset was created as part of the End of Term Web Archiving initiative. The lists of accounts came from the U.S. Digital Registry and by public submissions.&lt;/p&gt;

&lt;p&gt;These tweets were collected using the POST statuses/user_timeline method of the Twitter REST API. There is a README.txt file containing additional documentation on how it was collected.&lt;/p&gt;

&lt;p&gt;The GET statuses/lookup method supports retrieving the complete tweet for a tweet id (known as hydrating). Tools such as Twarc or Hydrator can be used to hydrate tweets.&lt;/p&gt;

&lt;p&gt;Per Twitter’s Developer Policy, tweet ids may be publicly shared; tweets may not.&lt;/p&gt;

&lt;p&gt;Questions about this dataset can be sent to sfm@gwu.edu. George Washington University researchers should contact us for access to the tweets.&lt;/p&gt;

&lt;p&gt;
This work is supported by grant #NARDI-14-50017-14 from the National Historical Publications and Records Commission.&lt;/p&gt;
DOI: 10.7910/dvn/u27jim
title: Geocoordinates of ATMs in Mexico

description: This data set contains the geocoordinates of all ATMs in Mexico. The data has three columns: (1) latitude; (2) longitude; (3) bank name.

This material is based upon work supported by the National Science Foundation under Grant Number 1530800. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
DOI: 10.7910/dvn/8kh0gb
title: Replication Data for: The statistical trade-off between word order and word structure – large-scale evidence for the principle of least effort

description: Languages employ different strategies to transmit structural and grammatical information. While, for example, grammatical dependency relationships in sentences are mainly conveyed by the ordering of the words for languages like Mandarin Chinese, or Vietnamese, the word ordering is much less restricted for languages such as Inupiatun or Quechua, as these languages (also) use the internal structure of words (e.g. inflectional morphology) to mark grammatical relationships in a sentence. Based on a quantitative analysis of more than 1,500 unique translations of different books of the Bible in almost 1,200 different languages that are spoken as a native language by approximately 6 billion people (more than 80% of the world population), we present large-scale evidence for a statistical trade-off between the amount of information conveyed by the ordering of words and the amount of information conveyed by internal word structure: languages that rely more strongly on word order information tend to rely less on word structure information and vice versa. Or put differently, if less information is carried within the word, more information has to be spread among words in order to communicate successfully. In addition, we find that – despite differences in the way information is expressed – there is also evidence for a trade-off between different books of the biblical canon that recurs with little variation across languages: the more informative the word order of the book, the less informative its word structure and vice versa. We argue that this might suggest that, on the one hand, languages encode information in very different (but efficient) ways. On the other hand, content-related and stylistic features are statistically encoded in very similar ways.
DOI: 10.6084/m9.figshare.29040490
title: Advances in stem cell-based therapeutic transfers for glioblastoma treatment

description: Glioblastoma (GBM), a highly malignant brain tumor, has a poor prognosis despite standard treatments like surgery, chemotherapy, and radiation. Glioblastoma stem cells (GSCs) play a critical role in recurrence and therapy resistance. Stem cell-based therapies have emerged as innovative approaches, leveraging the tumor-targeting abilities of stem cells to deliver treatments directly to GBM. This review focuses on using intact stem cells or subtypes for GBM therapy, excluding antigenic characteristics. The stem cell-based therapies explored include neural, mesenchymal, glioblastoma, hematopoietic and adipose-derived stem cells that have been investigated in both clinical and preclinical settings. A systematic search in PubMed, EMBASE, ClinicalTrials.gov, and Scopus had identified research up until January 2024. Key mechanisms reviewed include immune modulation, angiogenesis inhibition, and apoptosis induction. Discussion of completed and ongoing trials include emphasis on safety, efficacy, challenges, and study design limitations. Stem cell-based therapies hold promise for treating GBM by targeting GSCs and improving treatment outcomes. Despite some potential advantages, challenges such as tumorigenesis risks, delivery complexities, and sustained therapeutic effects persist. Future research should prioritize optimizing stem cell modifications, combining them with current treatments, and conducting large-scale trials to ensure safety and efficacy. Integrating stem cell therapies into GBM treatment could provide more effective and less invasive options for patients.
DOI: 10.6084/m9.figshare.29040490.v1
title: Advances in stem cell-based therapeutic transfers for glioblastoma treatment

description: Glioblastoma (GBM), a highly malignant brain tumor, has a poor prognosis despite standard treatments like surgery, chemotherapy, and radiation. Glioblastoma stem cells (GSCs) play a critical role in recurrence and therapy resistance. Stem cell-based therapies have emerged as innovative approaches, leveraging the tumor-targeting abilities of stem cells to deliver treatments directly to GBM. This review focuses on using intact stem cells or subtypes for GBM therapy, excluding antigenic characteristics. The stem cell-based therapies explored include neural, mesenchymal, glioblastoma, hematopoietic and adipose-derived stem cells that have been investigated in both clinical and preclinical settings. A systematic search in PubMed, EMBASE, ClinicalTrials.gov, and Scopus had identified research up until January 2024. Key mechanisms reviewed include immune modulation, angiogenesis inhibition, and apoptosis induction. Discussion of completed and ongoing trials include emphasis on safety, efficacy, challenges, and study design limitations. Stem cell-based therapies hold promise for treating GBM by targeting GSCs and improving treatment outcomes. Despite some potential advantages, challenges such as tumorigenesis risks, delivery complexities, and sustained therapeutic effects persist. Future research should prioritize optimizing stem cell modifications, combining them with current treatments, and conducting large-scale trials to ensure safety and efficacy. Integrating stem cell therapies into GBM treatment could provide more effective and less invasive options for patients.
DOI: 10.5281/zenodo.15597142
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250605a Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250605a Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15597143
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250605a Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250605a Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.25399/unisadata.29979817
title: The genus Cycas may have diversified from Indochina and occupied its current ranges through vicariance and dispersal events

description: Biogeographically, cycads were once widely distributed but the extant cycads are restricted to tropical and subtropical regions. They originated ~ 300 Ma and re-diversified recently around 12 Ma, with the genus <i>Cycas</i><i> </i>being the most rapidly diversified and largely distributed lineage. However, the forces that shaped the diversification and biogeography of the genus remain to be fully understood. Here, we first retrieved and used DNA sequences from Genbank (nuclear: PHYP, RPB1, HZP, AC3, F3H, SAMS and GTP; chloroplasts: plant barcode <i>trn</i>H-<i>psb</i>A<i>, trn</i>L-<i>trn</i>F, <i>trn</i>S-<i>trn</i>G and <i>psb</i>M-<i>trn</i>D) to assemble a complete dated phylogeny of <i>Cycas</i>.<i> </i>Then, we employed the Bayesian Binary Method to reconstruct the historical biogeography of the extant <i>Cycas</i><i> </i>and finally, using the Bayesian approach for diversification analysis, we explored the evolutionary events that might have shaped the rapid diversification and large distribution of <i>Cycas</i><i> </i>across the Pacific Islands. Our analysis pointed to Indo-China as the origin of the genus, which may have dispersed firstly across the Pacific Islands during the late Miocene aided by multiple excursions of sea levels and the development of a key innovation, i.e. a spongy endocarp particularly in the seeds of the subsection Rumphiae. The colonization of South China, which was thought to be the origin of the genus, may have occurred more recently aided by both dispersal and vicariance events. However, no significant shifts in the evolutionary events (speciation, extinction, mass extinction) that shaped the diversity of the genus were observed. Overall, our study re-clarifies the historical biogeography and the evolutionary forces that shaped the current diversity of the genus <i>Cycas</i>.
DOI: 10.25399/unisadata.29979817.v1
title: The genus Cycas may have diversified from Indochina and occupied its current ranges through vicariance and dispersal events

description: Biogeographically, cycads were once widely distributed but the extant cycads are restricted to tropical and subtropical regions. They originated ~ 300 Ma and re-diversified recently around 12 Ma, with the genus <i>Cycas</i><i> </i>being the most rapidly diversified and largely distributed lineage. However, the forces that shaped the diversification and biogeography of the genus remain to be fully understood. Here, we first retrieved and used DNA sequences from Genbank (nuclear: PHYP, RPB1, HZP, AC3, F3H, SAMS and GTP; chloroplasts: plant barcode <i>trn</i>H-<i>psb</i>A<i>, trn</i>L-<i>trn</i>F, <i>trn</i>S-<i>trn</i>G and <i>psb</i>M-<i>trn</i>D) to assemble a complete dated phylogeny of <i>Cycas</i>.<i> </i>Then, we employed the Bayesian Binary Method to reconstruct the historical biogeography of the extant <i>Cycas</i><i> </i>and finally, using the Bayesian approach for diversification analysis, we explored the evolutionary events that might have shaped the rapid diversification and large distribution of <i>Cycas</i><i> </i>across the Pacific Islands. Our analysis pointed to Indo-China as the origin of the genus, which may have dispersed firstly across the Pacific Islands during the late Miocene aided by multiple excursions of sea levels and the development of a key innovation, i.e. a spongy endocarp particularly in the seeds of the subsection Rumphiae. The colonization of South China, which was thought to be the origin of the genus, may have occurred more recently aided by both dispersal and vicariance events. However, no significant shifts in the evolutionary events (speciation, extinction, mass extinction) that shaped the diversity of the genus were observed. Overall, our study re-clarifies the historical biogeography and the evolutionary forces that shaped the current diversity of the genus <i>Cycas</i>.
DOI: 10.15468/dl.2787vd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Colocasia esculenta",
 "Country is Timor-Leste",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027428-250811113504898/datasets/export for details.
DOI: 10.15468/dl.phan74
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Colocasia esculenta",
 "Country is Tunisia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027429-250811113504898/datasets/export for details.
DOI: 10.57745/9r5zb0
title: T280_CAPRI_scoring.pdb.gz

description: :unav
DOI: 10.57745/cpeygb
title: T280_CAPRI_assessment.tab

description: :unav
DOI: 10.57745/ea28oi
title: H1233_T280_MassiveFold.tar.gz
DOI: 10.57745/eaej4k
title: H1233_T280_combined_scores.tab

description: :unav
DOI: 10.57745/g02d5i
title: LICENSE

description: :unav
DOI: 10.57745/itxuib
title: T280_CAPRI_assessment.tab

description: :unav
DOI: 10.57745/k1silf
title: MassiveFold_CASP16_Abstract.pdf

description: :unav
DOI: 10.57745/kwyiyr
title: gather_runs.py

description: :unav
DOI: 10.57745/odqewz
title: H1233_T280_only_pdbs_MassiveFold.tar.gz

description: :unav
DOI: 10.57745/qym4ox
title: README.txt

description: :unav
DOI: 10.57745/xgtybu
title: H1233_T280_combined_scores.tab

description: :unav
DOI: 10.5281/zenodo.15425658
title: Cilia dynamics creates a dynamic barrier to penetration of the periciliary layer in human airway epithelia

description: This dataset supports the analysis of fluid flow within the pericilary layer (PCL) of differentiated human bronchial epithelial cells (MucilAir™, Epithelix) by tracking the displacement of a caged fluorescent dye activated within the ciliary layer. The experiments were carried out at physiological temperature (37 °C) using a 60x water immersion objective.  The repository includes 14 out of the 15 total experiments used for the paper dataset; one experiment could not be uploaded due to storage limitations.

Each .zip folder contains the set of raw videos recorded on a specific area (cilia patch) on the epithelium. The experiments are from 3 distinct inserts from the same donors. For each position, labeled with coordinates indicating the displacement vector along the axis perpendicular to the epithelium, a bright field 'bf' and epifluorescent videos 'fluo' are recorder. The first one serves to identify the position and shape of the epithelium and measure the ciliary beating frequency (CBF), the second records dye displacement after activation, enabling analysis of fluid flow. The experimental configuration ensures that the dye is activated at consistent, spatially defined locations progressing from the cilia base toward the tips.

Videos are provided in .movie format, which can be read using the script moviereader.m found in the associated GitHub repository.

The full analysis pipeline is provided at https://github.com/erikacausa/PCL_caged_dye. The repository includes all necessary scripts to extract fluid flow and diffusion parameters, as well as CBF from the video data.

The main script, Caged_dye_manual_line.m, begins by loading the brightfield video for a specific position and allowing the user to manually trace the epithelial contour. This contour is then  translated to define a measuring line that intersects the dye activation point, which remains fixed in the field of view due to the stationary laser configuration. The fluorescence video is subsequently loaded, and the activation frame is detected automatically. A Gaussian fit is applied to the intensity profile along the measurement line in each frame, extracting the center of mass (mean) and spread (standard deviation) of the dye cloud over time. These values are saved in the file CagedResults.mat.

A second script, Caged_dye_fit_speed.m, analyzes the temporal evolution of the dye cloud. The displacement of the mean is used to estimate flow velocity, while the change in standard deviation over time is used to get information about diffusion properties.

In parallel, the CBF is measured using the script CBF_profile_autopoints.m. This algorithm identifies three regions within the PCL and applies a Fast Fourier Transform (FFT)-based approach to estimate the local beating frequency from the brightfield video signal.

This dataset is intended for use with the provided analysis scripts and may be adapted for extended studies or new formats.