cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.170k4/6
title: GainModel_WeaklyDifferentiatedLocus

description: Simulation of the two-locus gain model. The code estimates the establishment probability at the weakly differentiated locus.
DOI: 10.5061/dryad.170k4/7
title: Data_Fig2A_3_gain

description: Data used to generate Fig. 2A (circles), and Fig. 3. For further details, please refer to ReadMeFirst file (available separately).
DOI: 10.5061/dryad.170k4/8
title: Data_Fig2A_LargeLocus_gain

description: Data used to generate Fig. 2A (squares). For further details, please refer to ReadMeFirst file (available separately).
DOI: 10.5061/dryad.24jk4/1
title: divergence date table Final
DOI: 10.5061/dryad.24jk4/2
title: divergence_CytbND4_xml
DOI: 10.5061/dryad.24jk4/3
title: divergenceTree cytb_nd4
DOI: 10.5061/dryad.24jk4/4
title: cytbFig2a Mrbayes
DOI: 10.5061/dryad.24jk4/5
title: cytbFig2a RAxML
DOI: 10.5061/dryad.24jk4/6
title: Species Tree xml
DOI: 10.5061/dryad.24jk4/7
title: Species tree cytb alignment
DOI: 10.5061/dryad.24jk4/8
title: Species tree rag1 alignment
DOI: 10.5061/dryad.2vn65/30
title: Potential biases in the review process

description: The following concepts are discussed: impact of muscle relaxant use on the frequency of awareness, light anesthesia techniques, movement as spinal cord reflex, TEE and vasoactive drug use in the peri-operative period.
DOI: 10.5061/dryad.30374/1
title: 2016_06_27 MalesSpecMorph_museum

description: Colorimetric Spectra and Morphological variable measures per museum skin, males.
DOI: 10.5061/dryad.30374/2
title: SNP calls output from the GBS Bioinformatics pipeline

description: SNP calls in HapMap format with basic filtering on missingness and allele frequency for 95 Junco samples, generated by the Cornell University’s Institute for Genomic Diversity (IGD).
DOI: 10.5061/dryad.34d3n/1
title: Sown species composition

description: This file contains information on which species were sown into each of 27 experimental plots (2x2 m). The first column (‘plot.id’) gives the ID of the plot, linking the table to the other tables. All other columns contain presence/absence information of the plant species. 1, species sown; 0, species not sown.
DOI: 10.5061/dryad.34d3n/2
title: Level of nutrient supply and biomass of experimental plots

description: Contains information on manipulated level of nutrient supply (low, moderate or high) of the plots and their aboveground biomass (g/m2)  in the third year (2015). The first column (‘plot.id’) gives the ID of the plot, linking the table to the other tables.
DOI: 10.5061/dryad.34d3n/3
title: Observed species composition in first growing season (2013)

description: Presence/absence information of plant species in 675 0.1x0.1-m squares belonging to 27 permanent plots of 0.5x0.5 m, sampled in the first growing season (2013). Each permanent plot contained 25 squares (5 rows and 5 columns), which were numbered from left to right, beginning in the first row of the permanent plot.The first column (‘square.id’) is a running number containing the square ID. The second column (‘plot.id’) gives the ID of the plot, linking the table to the other tables. The third column (‘square.no’) gives the number of the square in the respective permanent plot. All other columns contain presence/absence information of the plant species. 1, species present; 0, species absent.
DOI: 10.5061/dryad.34d3n/4
title: Observed species composition in second growing season (2014)

description: Presence/absence information of plant species in 675 0.1x0.1-m squares belonging to 27 permanent plots of 0.5x0.5 m, sampled in the second growing season (2014). Each permanent plot contained 25 squares (5 rows and 5 columns), which were numbered from left to right, beginning in the first row of the permanent plot.The first column (‘square.id’) is a running number containing the square ID. The second column (‘plot.id’) gives the ID of the plot, linking the table to the other tables. The third column (‘square.no’) gives the number of the square in the respective permanent plot. All other columns contain presence/absence information of the plant species. 1, species present; 0, species absent.
DOI: 10.5061/dryad.34d3n/5
title: Observed species composition in third growing season (2015)

description: Presence/absence information of plant species in 675 0.1x0.1-m squares belonging to 27 permanent plots of 0.5x0.5 m, sampled in the third growing season (2015). Each permanent plot contained 25 squares (5 rows and 5 columns), which were numbered from left to right, beginning in the first row of the permanent plot.The first column (‘square.id’) is a running number containing the square ID. The second column (‘plot.id’) gives the ID of the plot, linking the table to the other tables. The third column (‘square.no’) gives the number of the square in the respective permanent plot. All other columns contain presence/absence information of the plant species. 1, species present; 0, species absent.
DOI: 10.5061/dryad.34d3n/6
title: Additional species in 2013

description: Additional species found in 2013 outside the 0.5x0.5-m permanent plots but within the 2x2-m experimental plots. The first column (‘plot.id’) gives the ID of the plot, linking the table to the other tables. All other columns contain presence/absence information of the plant species. 1, species present; 0, species absent.
DOI: 10.5061/dryad.34d3n/7
title: Additional species in 2014

description: Additional species found in 2014 outside the 0.5x0.5-m permanent plots but within the 2x2-m experimental plots. The first column (‘plot.id’) gives the ID of the plot, linking the table to the other tables. All other columns contain presence/absence information of the plant species. 1, species present; 0, species absent.
DOI: 10.5061/dryad.34d3n/8
title: Additional species in 2015

description: Additional species found in 2015 outside the 0.5x0.5-m permanent plots but within the 2x2-m experimental plots. The first column (‘plot.id’) gives the ID of the plot, linking the table to the other tables. All other columns contain presence/absence information of the plant species. 1, species present; 0, species absent.
DOI: 10.5061/dryad.3fc02/1
title: Moatt et al Data_S1

description: Main data set of the meta-analysis.
DOI: 10.5061/dryad.3fc02/2
title: Moatt et al Data_S2

description: information to contruct phylogenetic tree used in Meta-analysis
DOI: 10.5061/dryad.3fc02/3
title: Moatt et al Data_S3

description: List of papers considered in the final round of exclusions, with reasons for exclusion
DOI: 10.5061/dryad.3fc02/4
title: Moatt et al Dialog S2

description: Text file explaining columns in Data S1.
DOI: 10.5061/dryad.3fc02/5
title: Moatt et al R Script

description: R script for data analysis and figure production.
DOI: 10.5061/dryad.3qn55.1
title: Data from: Biodiversity gains from efficient use of private sponsorship for flagship species conservation
DOI: 10.5061/dryad.3qn55.2
title: Data from: Biodiversity gains from efficient use of private sponsorship for flagship species conservation
DOI: 10.5061/dryad.3qn55.2/1.2
title: NZ PPP database and code for Dryad

description: Data and code for NZ prioritization protocol.
DOI: 10.5061/dryad.3qt42/1
title: Predictor Variables for dbRDA analysis

description: This file includes all the predictor variables for our dbRDA including subspecies, topographic barriers, and ecological variables.
DOI: 10.5061/dryad.3qt42/2
title: Msat Genotypes for all badgers

description: This file includes all the microsatellite genotypes for 917 individual badgers in Genalex format.
DOI: 10.5061/dryad.3qt42/3
title: Fasta file for all mtDNA sequences

description: This file contains all d-loop sequences in FASTA format.
DOI: 10.5061/dryad.43t60/1
title: RAxML-20percent-all

description: Concatenated phylip alignment for RAxML: all samples, up to 20 percent missing samples per locus
DOI: 10.5061/dryad.43t60/2
title: RAxML-60percent-all

description: Concatenated phylip alignment for RAxML: all samples, up to 40 percent missing samples per locus
DOI: 10.5061/dryad.4g099/1
title: Amininasab_etal_JAB_Dryad

description: This data was used for analyses on manuscript entitled :No effect of partner age and lifespan on female age-specific reproductive performance in blue tits
DOI: 10.5061/dryad.5h9c4/1
title: Migration trajectory centroids

description: The data file contains the ten species considered in the study and their daily geographic centers of occurrence estimated at the population level daily across the annual cycle.
DOI: 10.5061/dryad.7k1n0/1
title: Recapture and breeding data of collared flycatchers reared in reduced and enlarged broods

description: Recapture and breeding data was collected in the field. Sex and paternity was determined by DNA-based molecular techniques.
DOI: 10.5061/dryad.7kk05/1
title: Parasite local adaptation on host populations of increasing genetic diversity

description: This file contains the raw bacteria and phage counts and average local adaptation scores for 5-day coevolution experiments in which phage were added to populations of Pseudomonas aeruginosa with increasing levels of CRISPR spacer diversity. The goal was to measure parasite (phage) location adaptation on host populations (Pesudomonas aeruginosa) with varying levels of resistance alleles (CRISPR spacers) to measure the effects of host diversity on parasite local adaptation.
DOI: 10.5061/dryad.kf154/1
title: Shapefiles_all_Agaminae_spp

description: Distribution data (GIS shape files) of agamid lizards in Africa in two Projected Coordinate Systems (LAEA, WGS84). See readme file for further details.
DOI: 10.5061/dryad.n5fr8/2
title: Figure S2. Mislocalized Sdt variants do not displace endogenous PATJ or PAR-6

description: (A-D) Sdt-GFP was ubiquitous expressed in wild type embryos and distribution of GFP, PATJ and PAR-6 was analyzed in stage 11-12 embryos. Scale bars = 5µm.
DOI: 10.5061/dryad.p5kk8/1
title: µsats_goby_Dryad-ARLEQUIN

description: Microsattelite genotype data in Arlequin input format
DOI: 10.5061/dryad.p5kk8/2
title: CytB_goby_Dryad-Arlequin

description: Cytochrome b haplotype information in Arlequin input format
DOI: 10.5061/dryad.p5kk8/3
title: Coordinates

description: Geographic coordinates of sites included in study in Microsoft Excel workbook format
DOI: 10.5061/dryad.pq373/1
title: ESM_Genotypes_Messor_barbarus

description: Genotype data at four microsatellites loci for Iberic populations of Messor barbarus
DOI: 10.5061/dryad.q0j90/1
title: 16S matrix

description: The mitochondrial 16S alignment in fasta format
DOI: 10.5061/dryad.q0j90/2
title: cox1 matrix

description: The mitochondrial cox1 alignment in fasta format
DOI: 10.5061/dryad.t5c97/2
title: Ecosytem recovery R scripts

description: R scripts used to calculate the recovery debt values with the meta-analytical database. Includes generalized mixed models, heterogeneity tests, and variance adjustments to meet meta-analytical criteria.
DOI: 10.5061/dryad.tr85d.2
title: Data from: Conserved but attenuated parental gene expression in allopolyploids: constitutive zinc hyperaccumulation in the allotetraploid Arabidopsis kamchatica
DOI: 10.5061/dryad.tr85d.2/1.2
title: HMA4 homeologs and flanking gene alignments

description: 13 CDS alignments used in polymorphism analysis of HMA4 in A. kamchatica.
DOI: 10.5061/dryad.tr85d.2/2.2
title: SupplementaryFile5

description: A. kamchatica Murodo (MUR) genotype whole genome leaf (5.2) and root (5.3) expression and statistics, and only heavy metal annotated genes (5.4).
DOI: 10.5061/dryad.tr85d.2/3.2
title: SupplementaryFile6

description: A. kamchatica Potter (PAK) genotype whole genome leaf (6.2) and root (6.3) expression and statistics.
DOI: 10.5061/dryad.v1t1b/1
title: Click Data

description: Spreadsheets contain click-data for our two online games. One for the adult nightjar-finding game, and the other for the clutch-finding game. Files are CSVs.
DOI: 10.5061/dryad.v466m/3
title: PlosOne_raw_data_with_map2_results_V2

description: There are two sheets in the data file. Sheet 1 contains raw data from Experiment 1 and sheet 2 contains raw data from Experiment 2. Sheet 1 shows the stimulation sites where data were collected for each ear, slopes of the forward masking functions, and the various detection threshold levels. Sheet 2 contains the 80-pps thresholds across the electrode array for each subject who participated in the speech recognition experiment, and speech results using subjects' clinical maps and the two experimental maps.
DOI: 10.5061/dryad.170k4/11
title: Data_Fig2C_3_loss

description: Data used to generate Fig. 2C, and Fig. 3. For further details, please refer to ReadMeFirst file (available separately).
DOI: 10.5061/dryad.170k4/12
title: Data_Fig2D_4_loss

description: Data used to generate Fig. 2D, and Fig. 4. For further details, please refer to ReadMeFirst file (available separately).
DOI: 10.5061/dryad.170k4/13
title: Data_Fig1_AB_S1.txt

description: Data used to generate Fig. 1A, B, and Fig. S1. For further details and explanations, please refer to the ReadMeFirst file (available separately).
DOI: 10.5061/dryad.170k4/14
title: Data_Fig1_CD.txt

description: Data used to generate Fig. 1C,D. For further details and explanations, please refer to ReadMeFirst file (available separately).
DOI: 10.5061/dryad.170k4/15
title: LossModel

description: Simulation of the two-locus loss model. For further details and explanations, please refer to ReadMeFirst file (available separately).
DOI: 10.5061/dryad.170k4/9
title: Data_Fig2B_Fig4AB_gain

description: Data used to generate Fig. 2B (circles), and Fig. 4. For further details, please refer to ReadMeFirst file (available separately).
DOI: 10.5061/dryad.187b3/1
title: Figure 2 - source data 3

description: Arabidopsis TE variants, including final classifications for each variant as a TE insertion, deletion, or NA.
DOI: 10.5061/dryad.187b3/2
title: Figure 1 - source data 1

description: TE insertions in Ler
DOI: 10.5061/dryad.187b3/3
title: Figure 1 - source data 2

description: TE absences in Ler
DOI: 10.5061/dryad.1b65b/1
title: Foo et al. beta-carotene supplementation study dataset
DOI: 10.5061/dryad.24jk4/10
title: Species tree ND4 alignment
DOI: 10.5061/dryad.24jk4/9
title: Species tree rag2 alignment
DOI: 10.5061/dryad.2784g/1
title: data_package_FarwigEtAl2016_JournalOfEcology

description: This data package contains data from the publication: Farwig, Nina; Schabo, Dana & Albrecht, Jörg (2016) Trait-associated loss of frugivores in fragmented forest does not affect seed removal rates. Journal of Ecology. Details about the content of the package can be found in the README.txt file and in the data_description.txt file in the zip folder.
DOI: 10.5061/dryad.374q4/1
title: BFspawner_mean_length_data

description: This file contains the time series of mean catch length data of adult Pacific bluefin tuna based on three fisheries: Taiwanese longline (TWL), Japanese coastal longline (JCL), and Japanese purse seine (JPS). The unit of length is cm. FYEAR: fishing year. Description of the sampling methods is available in the Material and Methods of the paper and supplemental material Table S1.
DOI: 10.5061/dryad.43t60/10
title: Starbeast_random70_2

description: Alignments (nexus) for *Beast analysis: 70 random loci, set 2
DOI: 10.5061/dryad.43t60/11
title: Starbeast_random70_3

description: Alignments (nexus) for *Beast analysis: 70 random loci, set 3
DOI: 10.5061/dryad.43t60/3
title: RAxML-20percent-1k

description: Concatenated phylip alignment for RAxML: 1k-samples, up to 20 percent missing samples per locus
DOI: 10.5061/dryad.43t60/4
title: RAxML-40percent-1k

description: Concatenated phylip alignment for RAxML: 1k-samples, up to 40 percent missing samples per locus
DOI: 10.5061/dryad.43t60/5
title: Starbeast_BPP_informative70

description: Alignments (nexus) for *Beast and BPP analyses: 70 most informative loci
DOI: 10.5061/dryad.43t60/6
title: Starbeast_informative100

description: Alignments (nexus) for *Beast analysis: 100 most informative loci
DOI: 10.5061/dryad.43t60/7
title: Starbeast_informative50

description: Alignments (nexus) for *Beast analysis: 50 most informative loci
DOI: 10.5061/dryad.43t60/8
title: Starbeast_informative20

description: Alignments (nexus) for *Beast analysis: 20 most informative loci
DOI: 10.5061/dryad.43t60/9
title: Starbeast_BPP_random70_1

description: Alignments (nexus) for *Beast and BPP analyses: 70 random loci, set 1
DOI: 10.5061/dryad.48r68/1
title: World+human

description: Data used in the analysis of: Bruno, J. F. and Valdivia, A. Coral reef degradation is not correlated with local human population density. Sci. Rep. 6, 29778; doi: 10.1038/srep29778 (2016). File includes site meta-data, coral and macroalgal cover, coordinates (lat, long), and the density of humans (number of human residents within 25, 50 and 100 km of each site).
DOI: 10.5061/dryad.52qk8/1
title: Cattadori et al. parasites and nutrition on gut microbiota raw files

description: This zip folder has all the original microbiome, immunity and parasite data used in this study. A readMe file is also included that explain each file. Please, contact Isabella Cattadori if additional details are needed.
DOI: 10.5061/dryad.6kt29/1
title: Daily Aerial Density and migration flux

description: Data were collected throughout the vertical sampling range of the VLRs, that is at heights between 150 m and 1200 m, and from above the following VLR locations: Malvern, Worcestershire (lat. 52° 06’ 04” N, long. 2° 18’ 38” W) in south-western England from 2000 to 2003; Chilbolton, Hampshire (lat. 51° 8’ 40” N, long. 1° 26’ 13” W) in south-central England from 2004 to 2009; and Rothamsted, Harpenden, Hertfordshire (lat. 51° 48’ 32” N, long. 0° 21’ 27” W) in south-eastern England from 2000 to 2009.
DOI: 10.5061/dryad.7d6c5/1
title: Figure and Table

description: Figures & Tables
DOI: 10.5061/dryad.7p160/1
title: Data for the multi-level reaction norm analysis

description: Great tits aggressive response towards simulated territorial intrusions.
DOI: 10.5061/dryad.8ks41/1
title: RawData_EvolAppl_Weigert_et_al_2016

description: All raw data are collected in this file with self explanatory treatment names and a short technical description.
DOI: 10.5061/dryad.9qs53/1
title: PaternityDataDietaryTransgenEffects

description: Results of sperm competition outcomes (i.e. numbers of offspring sired) of sons of fathers that had been reared on either a 4:1 protein:carbohydrate (P:C) ratio ("high", H) or 1:1 P:C ratio ("low", L).
DOI: 10.5061/dryad.fc22r/1
title: Data from: Sound settlement: noise surpasses land cover in explaining breeding habitat selection of secondary cavity nesting birds

description: This file contains all data from the paper "Sound settlement: noise surpasses land cover in explaining breeding habitat selection of secondary cavity nesting birds." Please note, all data from the paper is included in this file; however, to analyze site level data for species-inclusive and species-specific hypotheses, some simple reorganization will be required.
DOI: 10.5061/dryad.fs47h/1
title: Bejarano_etal_Functional_Ecology_2017

description: Data presented in The shape of success in a turbulent world: wave exposure filtering of coral reef herbivory
DOI: 10.5061/dryad.hn132/1
title: Maslo_PeerJ_clutchloss_rawdata

description: The file provides the fate of each clutch in the study, along with the predictor variables associated with that clutch.
DOI: 10.5061/dryad.p68f8/1
title: A_nodes

description: Please refer to Readme.rtf
DOI: 10.5061/dryad.p68f8/2
title: B_nodes

description: Please refer to Readme.rtf
DOI: 10.5061/dryad.p68f8/3
title: C_nodes

description: Please refer to Readme.rtf
DOI: 10.5061/dryad.q0j90/10
title: EF-1α *BEAST tree file

description: The nuclear EF-1α *BEAST output tree
DOI: 10.5061/dryad.q0j90/11
title: PEPCK pos1-2 *BEAST tree file

description: The nuclear PEPCK *BEAST output tree for codon positions 1 and 2
DOI: 10.5061/dryad.q0j90/3
title: EF-1α matrix

description: The nuclear EF-1α alignment in fasta format
DOI: 10.5061/dryad.q0j90/4
title: PEPCK matrix

description: The nuclear PEPCK alignment in fasta format
DOI: 10.5061/dryad.q0j90/5
title: wg matrix

description: The nuclear wg alignment in fasta format
DOI: 10.5061/dryad.q0j90/6
title: Species tree *BEAST input file

description: The species tree *BEAST input file in xml format
DOI: 10.5061/dryad.q0j90/7
title: 16S *BEAST tree file

description: The mitochondrial 16S *BEAST output tree
DOI: 10.5061/dryad.q0j90/8
title: cox1 pos1-2_*BEAST tree file

description: The mitochondrial cox1 *BEAST output tree for codon positions 1 and 2
DOI: 10.5061/dryad.q0j90/9
title: cox1 pos3 *BEAST tree file

description: The mitochondrial cox1 *BEAST output tree for codon position 3
DOI: 10.5061/dryad.q6784/1
title: README

description: A README file with information about the code.
DOI: 10.5061/dryad.q6784/10
title: physical_values.hpp

description: C++ file containing necessary functions for the main code
DOI: 10.5061/dryad.q6784/2
title: structured population script

description: BASH example script for running the structured populations code.
DOI: 10.5061/dryad.q6784/3
title: non structured populations script

description: BASH example script for running the non structured populations code.
DOI: 10.5061/dryad.q6784/4
title: structured population code

description: C++ code for calculation of the quantities related to structured populations.
DOI: 10.5061/dryad.q6784/5
title: Makefile

description: Makefile with the instructions to compile the code.
DOI: 10.5061/dryad.q6784/6
title: non structured population code

description: C++ code for calculation of the quantities related to non structured populations.
DOI: 10.5061/dryad.q6784/7
title: groups_elements.hpp

description: C++ file containing necessary functions for the main code
DOI: 10.5061/dryad.q6784/8
title: random.hpp

description: C++ file containing necessary functions for the main code
DOI: 10.5061/dryad.qf768/1
title: Supplementary Materials - Raw Data
DOI: 10.5061/dryad.rh24n/1
title: Suppl_Info_Table_S1_AFLPresults

description: AFLPs
DOI: 10.5061/dryad.rm0q2/1
title: Kopi af Alle Ungevægt by og periferi - 1 og 2 kuld - september 2015 - rev 251215

description: Data on chick mass (town and town periphery)
DOI: 10.5061/dryad.rm0q2/2
title: Kopi af Kopi af Alle data vedr fordringer pr time og insekttæthed - september 15

description: Feeding rates and insect counts
DOI: 10.5061/dryad.rm0q2/3
title: Landsvale data 2012-2015- Analyser jan 2016 - Peter Teglhøj

description: Reproductive data 2012-2015
DOI: 10.5061/dryad.sv680/1
title: Individual and immune variables of rodents from the black rat invasion route.

description: This file contains all the individual (sex, body mass, age class), methodological (plate factor, initial hemolysis of the serum) and immune (HA, HL, Hp) variables considered in the statistical analyses carried out on rodents from the black rat invasion route.
DOI: 10.5061/dryad.sv680/2
title: Individual and immune variables of rodents from the house mouse invasion route.

description: This file contains all the individual (sex, body mass, age class), methodological (plate factor, initial hemolysis of the serum) and immune (HA, HL, Hp) variables considered in the statistical analyses carried out on rodents from the house mouse invasion route.
DOI: 10.5061/dryad.tr7m5/1
title: Complete Dataset

description: Complete dataset used in the final comparative phylogenetic analyses.
DOI: 10.5061/dryad.tr85d.1
title: Data from: Conserved but attenuated parental gene expression in allopolyploids: constitutive zinc hyperaccumulation in the allotetraploid Arabidopsis kamchatica
DOI: 10.5061/dryad.tr85d.2/4.2
title: SupplementaryFile7

description: A. halleri and A. lyrata leaf and root expression and statistics.
DOI: 10.15169/sci-gaia:1473425695.4
title: Sample Wecken Entries from explore.Brot.AT!

description: This is just an XML TEI document with a sample of formatting choices for the modelling of an onomasiological subset of the data.
DOI: 10.5061/dryad.00db7/1
title: nexus_phylogeny_alignments

description: See the README
DOI: 10.5061/dryad.187b3/4
title: Figure 2 - source data 1

description: TE insertions in all 216 Arabidopsis accessions