cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3564417
title: Appendix B. Validation of the mountain lion resource selection model in the Garnet and Bitterroot study areas.

description: Validation of the mountain lion resource selection model in the Garnet and Bitterroot study areas.
DOI: 10.6084/m9.figshare.3564417.v1
title: Appendix B. Validation of the mountain lion resource selection model in the Garnet and Bitterroot study areas.

description: Validation of the mountain lion resource selection model in the Garnet and Bitterroot study areas.
DOI: 10.6084/m9.figshare.3564414
title: Appendix C. A table showing spatial capture–recapture model estimates for the total number (N) and density of mountain lions in the 5912 km² statespace in western Montana from all 16 candidate models.

description: A table showing spatial capture–recapture model estimates for the total number (N) and density of mountain lions in the 5912 km² statespace in western Montana from all 16 candidate models.
DOI: 10.6084/m9.figshare.3564414.v1
title: Appendix C. A table showing spatial capture–recapture model estimates for the total number (N) and density of mountain lions in the 5912 km² statespace in western Montana from all 16 candidate models.

description: A table showing spatial capture–recapture model estimates for the total number (N) and density of mountain lions in the 5912 km² statespace in western Montana from all 16 candidate models.
DOI: 10.6084/m9.figshare.3564411
title: Appendix D. A figure showing the proportion of total unique genotypes captured and search effort over the December 2012 – April 2013 sampling period.

description: A figure showing the proportion of total unique genotypes captured and search effort over the December 2012 – April 2013 sampling period.
DOI: 10.6084/m9.figshare.3564411.v1
title: Appendix D. A figure showing the proportion of total unique genotypes captured and search effort over the December 2012 – April 2013 sampling period.

description: A figure showing the proportion of total unique genotypes captured and search effort over the December 2012 – April 2013 sampling period.
DOI: 10.6084/m9.figshare.3564408
title: Appendix E. A figure showing the probability of male (black line) and female (gray line) mountain lion capture as a function of distance from the home range center estimated from the top SCR model.

description: A figure showing the probability of male (black line) and female (gray line) mountain lion capture as a function of distance from the home range center estimated from the top SCR model.
DOI: 10.6084/m9.figshare.3564408.v1
title: Appendix E. A figure showing the probability of male (black line) and female (gray line) mountain lion capture as a function of distance from the home range center estimated from the top SCR model.

description: A figure showing the probability of male (black line) and female (gray line) mountain lion capture as a function of distance from the home range center estimated from the top SCR model.
DOI: 10.6084/m9.figshare.3564405
title: Supplement 1. R script and data for spatial capture–recapture models that incorporate harvest and an existing resource selection function value as a covariate on density of activity centers.

description: File List R_code_and_data.txt (MD5: 843f5c4baf70b9f5abe94344fd8c10bb) Description The code and data for spatial capture–recapture models that incorporate harvest and an existing resource selection function value as a covariate on density of activity centers. Models are implemented using the SCR package available from https://github.com/jaroyle/SCRbayes as described in Royle et al. (2013). Users must load the SCR functions (SCR.i.fn) as described in these additional resources. Once loaded, we provide sample code for running 1 model including dead recoveries, the RSF and our sample data below.
DOI: 10.6084/m9.figshare.3564402
title: Appendix A. Figures that are replicates of Figs. 3 and 4 in the main paper, but present the dose-response functions for severity level 1 (Figs. A1 and A3) and severity level 3 (Figs. A2 and A4).

description: Figures that are replicates of Figs. 3 and 4 in the main paper, but present the dose-response functions for severity level 1 (Figs. A1 and A3) and severity level 3 (Figs. A2 and A4).
DOI: 10.6084/m9.figshare.3564402.v1
title: Appendix A. Figures that are replicates of Figs. 3 and 4 in the main paper, but present the dose-response functions for severity level 1 (Figs. A1 and A3) and severity level 3 (Figs. A2 and A4).

description: Figures that are replicates of Figs. 3 and 4 in the main paper, but present the dose-response functions for severity level 1 (Figs. A1 and A3) and severity level 3 (Figs. A2 and A4).
DOI: 10.6084/m9.figshare.3564399
title: Appendix A. Results of principal component analysis (PCA) with soil chemistry after conditioning as dependent variables and conditioning species as samples.

description: Results of principal component analysis (PCA) with soil chemistry after conditioning as dependent variables and conditioning species as samples.
DOI: 10.6084/m9.figshare.3564396
title: Appendix A. Trends in agricultural and forestry statistics and relationships of annual NDVI with crop yield and total plantation area.

description: Trends in agricultural and forestry statistics and relationships of annual NDVI with crop yield and total plantation area.
DOI: 10.6084/m9.figshare.3564396.v1
title: Appendix A. Trends in agricultural and forestry statistics and relationships of annual NDVI with crop yield and total plantation area.

description: Trends in agricultural and forestry statistics and relationships of annual NDVI with crop yield and total plantation area.
DOI: 10.6084/m9.figshare.3564393
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3564393.v1
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3564390
title: Appendix A. Supplementary material on LandClim model improvements and parameterization.

description: Supplementary material on LandClim model improvements and parameterization.
DOI: 10.6084/m9.figshare.3564387
title: Appendix B. Climate drivers, development of simulated fire disturbance and additional results on forest development.

description: Climate drivers, development of simulated fire disturbance and additional results on forest development.
DOI: 10.6084/m9.figshare.3564384
title: Supplement 1. Annotated c++ source code for the beetle model implemented in the forest landscape model LandClim.

description: File List LandClim_beetle_model_source_code.zip (MD5: 67b81710014ff4275a30f85217bc3f23) Description The .zip file contains three text files (beetle.cpp, climate.cpp and cohort.cpp) that contain the C++ source code for the beetle model implemented in LandClim. The code is annotated with references to variable names and equations in the published article. beetle.cpp contains the main routines of the beetle model, climate.cpp calculations of bioclimatic variables and cohort.cpp contains the routines used to simulate beetle-induced tree mortality. A previous version of this source code is archived in the Dryas database (http://dx.doi.org/10.5061/dryad.18790) and refers to European spruce beetles (<i>Ips typographus</i>). The files archived here comprise an updated, adapted and extended version of this code and include routines specific to North American spruce beetles (<i>Dendroctonus rufipennis</i>).
DOI: 10.6084/m9.figshare.3564384.v1
title: Supplement 1. Annotated c++ source code for the beetle model implemented in the forest landscape model LandClim.

description: File List LandClim_beetle_model_source_code.zip (MD5: 67b81710014ff4275a30f85217bc3f23) Description The .zip file contains three text files (beetle.cpp, climate.cpp and cohort.cpp) that contain the C++ source code for the beetle model implemented in LandClim. The code is annotated with references to variable names and equations in the published article. beetle.cpp contains the main routines of the beetle model, climate.cpp calculations of bioclimatic variables and cohort.cpp contains the routines used to simulate beetle-induced tree mortality. A previous version of this source code is archived in the Dryas database (http://dx.doi.org/10.5061/dryad.18790) and refers to European spruce beetles (<i>Ips typographus</i>). The files archived here comprise an updated, adapted and extended version of this code and include routines specific to North American spruce beetles (<i>Dendroctonus rufipennis</i>).
DOI: 10.6084/m9.figshare.3564381
title: Appendix A. Model selection statistics for landscape pattern effects on three hydrologic services at the subwatershed scale.

description: Model selection statistics for landscape pattern effects on three hydrologic services at the subwatershed scale.
DOI: 10.6084/m9.figshare.3564381.v1
title: Appendix A. Model selection statistics for landscape pattern effects on three hydrologic services at the subwatershed scale.

description: Model selection statistics for landscape pattern effects on three hydrologic services at the subwatershed scale.
DOI: 10.6084/m9.figshare.3564378
title: Appendix B. Histogram of subwatershed size.

description: Histogram of subwatershed size.
DOI: 10.6084/m9.figshare.3564378.v1
title: Appendix B. Histogram of subwatershed size.

description: Histogram of subwatershed size.
DOI: 10.6084/m9.figshare.3564375
title: Appendix C. Spatial distribution of three hydrologic services at 30-m resolution.

description: Spatial distribution of three hydrologic services at 30-m resolution.
DOI: 10.6084/m9.figshare.3564375.v1
title: Appendix C. Spatial distribution of three hydrologic services at 30-m resolution.

description: Spatial distribution of three hydrologic services at 30-m resolution.
DOI: 10.6084/m9.figshare.3564372
title: Appendix D. Spatial distribution of groundwater wells with nitrate measurements for 2006.

description: Spatial distribution of groundwater wells with nitrate measurements for 2006.
DOI: 10.6084/m9.figshare.3564372.v1
title: Appendix D. Spatial distribution of groundwater wells with nitrate measurements for 2006.

description: Spatial distribution of groundwater wells with nitrate measurements for 2006.
DOI: 10.6084/m9.figshare.3564369
title: Appendix A. A table showing parameter estimates of the relationship between abundance of red deer, chamois, and ibex, and habitat use of chamois and ibex during summer and winter in Val Trupchun, Swiss National Park, and a figure showing seasonal diet composition of chamois, ibex, and red deer by plant species.

description: A table showing parameter estimates of the relationship between abundance of red deer, chamois, and ibex, and habitat use of chamois and ibex during summer and winter in Val Trupchun, Swiss National Park, and a figure showing seasonal diet composition of chamois, ibex, and red deer by plant species.
DOI: 10.6084/m9.figshare.3564369.v1
title: Appendix A. A table showing parameter estimates of the relationship between abundance of red deer, chamois, and ibex, and habitat use of chamois and ibex during summer and winter in Val Trupchun, Swiss National Park, and a figure showing seasonal diet composition of chamois, ibex, and red deer by plant species.

description: A table showing parameter estimates of the relationship between abundance of red deer, chamois, and ibex, and habitat use of chamois and ibex during summer and winter in Val Trupchun, Swiss National Park, and a figure showing seasonal diet composition of chamois, ibex, and red deer by plant species.
DOI: 10.6084/m9.figshare.3564366
title: Appendix A. A table listing all vascular plant species found in the Latjajaure plots in 1995, 1999, or 2001, with indication of their functional group and whether they were present in the meadow community, the heath community, or both, and a table showing accumulated constrained eigenvalues for the RDA analysis in the meadow and heath communities.

description: A table listing all vascular plant species found in the Latjajaure plots in 1995, 1999, or 2001, with indication of their functional group and whether they were present in the meadow community, the heath community, or both, and a table showing accumulated constrained eigenvalues for the RDA analysis in the meadow and heath communities.
DOI: 10.6084/m9.figshare.3564366.v1
title: Appendix A. A table listing all vascular plant species found in the Latjajaure plots in 1995, 1999, or 2001, with indication of their functional group and whether they were present in the meadow community, the heath community, or both, and a table showing accumulated constrained eigenvalues for the RDA analysis in the meadow and heath communities.

description: A table listing all vascular plant species found in the Latjajaure plots in 1995, 1999, or 2001, with indication of their functional group and whether they were present in the meadow community, the heath community, or both, and a table showing accumulated constrained eigenvalues for the RDA analysis in the meadow and heath communities.
DOI: 10.6084/m9.figshare.3564363
title: Supplement 1. R script for conducting the simulation described in the main text.

description: File List simulation_fixed.R (MD5: 65a3878774941b6884f579ff655bc83a) simulation_random.R (MD5: add7dc7b4a54cb6c37a73dcea0c40d19) simulation_la_nina_proportional.R (MD5: f61586afd0e8e33b8a80602cb9a18cf0) simulation_la_nina_arid.R (MD5: 852ca820712991952f6579b332f1d9b3) Description The four R codes listed allow conducting the simulations respectively described as the Fixed pattern, the random pattern, the La Nina pattern (proportional) and the La Nina pattern (arid) in the main text. Scripts allow the extraction of the data for the last 25 steps (years) of the simulation, out of 100.
DOI: 10.6084/m9.figshare.3564360
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3564363.v1
title: Supplement 1. R script for conducting the simulation described in the main text.

description: File List simulation_fixed.R (MD5: 65a3878774941b6884f579ff655bc83a) simulation_random.R (MD5: add7dc7b4a54cb6c37a73dcea0c40d19) simulation_la_nina_proportional.R (MD5: f61586afd0e8e33b8a80602cb9a18cf0) simulation_la_nina_arid.R (MD5: 852ca820712991952f6579b332f1d9b3) Description The four R codes listed allow conducting the simulations respectively described as the Fixed pattern, the random pattern, the La Nina pattern (proportional) and the La Nina pattern (arid) in the main text. Scripts allow the extraction of the data for the last 25 steps (years) of the simulation, out of 100.
DOI: 10.6084/m9.figshare.3564360.v1
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.3564357
title: Appendix A. Appendix contains specific details for each study site on morphological and phylogenetic measures of alpha and beta diversity.

description: Appendix contains specific details for each study site on morphological and phylogenetic measures of alpha and beta diversity.
DOI: 10.6084/m9.figshare.3564351
title: Supplement 1. Raw species and genus level incidence matrices, alpha diversity estimates and elevation and beta diversity estimates with WorldClim abiotic variables.

description: File List morpho_pa.csv (MD5: 8b115668503eb5aa066e3937e8a241ff) genus_pa.csv (MD5: 0bb32638ff9c64fea79c3ffea7ce3abf) Alpha_Data.csv (MD5: 9ffb7b482d3e3672f2c6e941849eff35) Beta_Data.csv (MD5: 70b49e0b30e256f74fec765a15f6a896) Description The morpho_pa file contains the reported incidence matrices synthesized here. The data file is organized by reference (column 1), species (column 2) and species incidences by elevation (Columns 3–24). The genus_pa file contains the genus abundance matrices created here based on the species level data reported by the authors in their original publication. Values represent the number of species present at particular elevations. The data file is organized by reference (column 1), species (column 2) and species incidences by elevation (Columns 3–24). The Alpha_Data file contains the morphological and phylogenetic calculations of alpha diversity. The coarse geographic location of the study, the reference and the elevation (Column 1–3). Taxonomic richness species or genus are in Column 4 and 5). Phylogenetic diversity (6 and 7). Two measures of phylogenetic community structure (NRI and NTI) calculated using the independent swap algorithm (Column 8 and 9). Phylocom outputs of both NRI and NTI using the four null models used to estimate phylogenetic community structure are presented in sequence. Column 9–28: (Gotelli and Entsminger’s independent swap algorithm); Column 29–47 (Species in each sample become random draws from phylogeny pool); Column 48-66 (Species in each sample become random draws from sample pool); Column 67–85 (This null model shuffles species labels across the entire phylogeny) The Beta_Data file contains the source information for each study (Columns 1 and 2), the pairwise elevational distance between sites (Column 3), the phylobetadiversity between sites (Column 4 and 5), the Jaccard Classic (Column 6), the average absolute latitude of the study location (Column 7), the maximum elevation of the study site (Column 8) and the WorldClim data of temperature and precipitation (BIO1 – BIO19) (Column 9–27).
DOI: 10.6084/m9.figshare.3564348
title: Appendix A. Supplemental table and figures.

description: Supplemental table and figures.
DOI: 10.6084/m9.figshare.3564348.v1
title: Appendix A. Supplemental table and figures.

description: Supplemental table and figures.
DOI: 10.6084/m9.figshare.3564345
title: Supplement 1. R and Jags scripts for conducting the analysis described in the main text together with the original database.

description: File List R_code.txt (MD5: 69237da6c6a972892964400959324d75) JAGS_model.txt (MD5: d08fd5b3b18348a5f154e6b5d5647aad) variables.pdf (MD5: 420c3ca5b1ff6b9b1e1caf60da2a9d5b) database.csv (MD5: 42e0693cff653021f84fde1037857e5c) Description The R code included in R_code.txt allow to perform ordinal regression for <i>Ceriodaphnia</i> epibiont burden (example corresponding to top panel in Table 2 of the manuscript). The Jags code included in JAGS_model.txt allows to perform a JAGS model for ordinal regression. The file variables.pdf contains detailed information about the variables in the database database.csv.
DOI: 10.6084/m9.figshare.3564342
title: Appendix A. A table showing top ranked models from occupancy modeling of bait station foraging.

description: A table showing top ranked models from occupancy modeling of bait station foraging.
DOI: 10.6084/m9.figshare.3564345.v1
title: Supplement 1. R and Jags scripts for conducting the analysis described in the main text together with the original database.

description: File List R_code.txt (MD5: 69237da6c6a972892964400959324d75) JAGS_model.txt (MD5: d08fd5b3b18348a5f154e6b5d5647aad) variables.pdf (MD5: 420c3ca5b1ff6b9b1e1caf60da2a9d5b) database.csv (MD5: 42e0693cff653021f84fde1037857e5c) Description The R code included in R_code.txt allow to perform ordinal regression for <i>Ceriodaphnia</i> epibiont burden (example corresponding to top panel in Table 2 of the manuscript). The Jags code included in JAGS_model.txt allows to perform a JAGS model for ordinal regression. The file variables.pdf contains detailed information about the variables in the database database.csv.
DOI: 10.6084/m9.figshare.3564342.v1
title: Appendix A. A table showing top ranked models from occupancy modeling of bait station foraging.

description: A table showing top ranked models from occupancy modeling of bait station foraging.
DOI: 10.6084/m9.figshare.3564339
title: Appendix A. Model validation figures.

description: Model validation figures.
DOI: 10.6084/m9.figshare.3564339.v1
title: Appendix A. Model validation figures.

description: Model validation figures.
DOI: 10.6084/m9.figshare.3564336
title: Appendix B. Figures showing survey areas used to calculate density and estimate potential abundance of mountain goats that may be supportable by the greater Yellowstone area, USA, given colonization of all predicted suitable habitat classified as low, medium, and high, and predicted summer habitat suitabilities for mountain goats overlaid by summer locations of bighorn sheep collected by management agency personnel for an example area in the South Absaroka Range of the greater Yellowstone area.

description: Figures showing survey areas used to calculate density and estimate potential abundance of mountain goats that may be supportable by the greater Yellowstone area, USA, given colonization of all predicted suitable habitat classified as low, medium, and high, and predicted summer habitat suitabilities for mountain goats overlaid by summer locations of bighorn sheep collected by management agency personnel for an example area in the South Absaroka Range of the greater Yellowstone area.
DOI: 10.6084/m9.figshare.3564336.v1
title: Appendix B. Figures showing survey areas used to calculate density and estimate potential abundance of mountain goats that may be supportable by the greater Yellowstone area, USA, given colonization of all predicted suitable habitat classified as low, medium, and high, and predicted summer habitat suitabilities for mountain goats overlaid by summer locations of bighorn sheep collected by management agency personnel for an example area in the South Absaroka Range of the greater Yellowstone area.

description: Figures showing survey areas used to calculate density and estimate potential abundance of mountain goats that may be supportable by the greater Yellowstone area, USA, given colonization of all predicted suitable habitat classified as low, medium, and high, and predicted summer habitat suitabilities for mountain goats overlaid by summer locations of bighorn sheep collected by management agency personnel for an example area in the South Absaroka Range of the greater Yellowstone area.
DOI: 10.6084/m9.figshare.3564333
title: Appendix C. Model selection results.

description: Model selection results.
DOI: 10.6084/m9.figshare.3564333.v1
title: Appendix C. Model selection results.

description: Model selection results.
DOI: 10.6084/m9.figshare.3564330
title: Appendix A. Supplementary tables.

description: Supplementary tables.
DOI: 10.6084/m9.figshare.3564330.v1
title: Appendix A. Supplementary tables.

description: Supplementary tables.
DOI: 10.6084/m9.figshare.3564324
title: Appendix A. Density estimates of 35 bird species along the Missouri National Recreational River.

description: Density estimates of 35 bird species along the Missouri National Recreational River.
DOI: 10.6084/m9.figshare.3564324.v1
title: Appendix A. Density estimates of 35 bird species along the Missouri National Recreational River.

description: Density estimates of 35 bird species along the Missouri National Recreational River.
DOI: 10.6084/m9.figshare.3564321
title: Appendix A. Tables and figures showing warming effects on model parameters and proceses in ecosystem carbon cycling.

description: Tables and figures showing warming effects on model parameters and proceses in ecosystem carbon cycling.
DOI: 10.6084/m9.figshare.3564321.v1
title: Appendix A. Tables and figures showing warming effects on model parameters and proceses in ecosystem carbon cycling.

description: Tables and figures showing warming effects on model parameters and proceses in ecosystem carbon cycling.
DOI: 10.6084/m9.figshare.3564318
title: Appendix A. Tables showing environmental characteristics of streams sampled upstreamand downstream of beaver impoundments in the study area and a Pearson correlation matrix of relationships between measured variables at sites upstream from beaver ponds.

description: Tables showing environmental characteristics of streams sampled upstreamand downstream of beaver impoundments in the study area and a Pearson correlation matrix of relationships between measured variables at sites upstream from beaver ponds.