cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/frv-4tg-50s
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-z87-skyg
title: PAN-00064431 - wire brooch with stretched semi-circular bow

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00064431&lt;/p&gt;
description: Modified: 2020-06-18T10:48:34+02:00
DOI: 10.3535/5ce-ya7-zm1
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f97-pmp-v78
title: Danis danis (Cramer, 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ar9-e0h-9m6
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-z87-t4wd
title: PAN-00037679 - coin/coin-related, stad, duit

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00037679&lt;/p&gt;
description: Modified: 2020-06-09T10:01:01+02:00
DOI: 10.3535/wh9-yqk-nlk
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ypx-d0n-8qr
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.kzxygu
title: Occurrence Download

description: A dataset containing 17653 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Deraeocoris lutescens (Schilling, 1837)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17653 records from 235 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092638-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.10947
title: Computational Data for "Factors influencing the mechanical properties of formamidinium lead halides and related hybrid perovskites"

description: This repository contains the data from the computational work done in the paper. The data provide enough information to reproduce the results shown in the paper.
DOI: 10.6084/m9.figshare.c.3628316_d3.v1
title: Additional file 1: of Militarization, human rights violations and community responses as determinants of health in southeastern Myanmar: results of a cluster survey

description: Associations between health in households that did not experience human rights violations and human rights violations in neighborsâ   households. (XLSX 10 kb)
DOI: 10.17863/cam.8207
title: Report presented to the Charity Open Access Fund for article processing charges managed by the University of Cambridge, 2015-2016 (revised)

description: These Excel spreadsheets record the applications made for open access article processing charges (APCs) through the Charity Open Access Fund (COAF) and supplemental Wellcome Trust open access fund at the University of Cambridge, via the Office of Scholarly Communication, Cambridge University Library between 1 October 2015 and 30 September 2016.
DOI: 10.6084/m9.figshare.c.3628316_d4.v1
title: Additional file 2: of Militarization, human rights violations and community responses as determinants of health in southeastern Myanmar: results of a cluster survey

description: Associations between village self-protection activities and risks of human rights violations and poor health. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3628298_d10.v1
title: Additional file 1: of Rab32 and Rab38 genes in chordate pigmentation: an evolutionary perspective

description: Accession number of sequences used in the evolutionary analysis. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3628328_d1.v1
title: Additional file 8: Table S5. of Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms

description: Effect of the CD-HIT-EST aS value on clustering. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3628328_d2.v1
title: Additional file 3: of Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms

description: Perl script used to perform our assembly pipeline. (PL 43Â kb)
DOI: 10.6084/m9.figshare.c.3628346_d1.v1
title: Additional file 3: of Variation in population levels of physical activity in European adults according to cross-European studies: a systematic literature review within DEDIPAC

description: Data extraction file. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3628328_d3.v1
title: Additional file 5: Table S2. of Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms

description: Assembly metrics of the three sub-assemblies and the final concatenated assembly for each of the six datasets. (XLSX 11Â kb)
DOI: 10.17863/cam.17105
title: Research data supporting "Neogene Uplift and Magmatism of Anatolia: Insights from Drainage Analysis and Basaltic Geochemistry"

description: Crustal thickness, drainage inventory and igneous geochemical data for Anatolia. Dataset S1 is compilation of published receiver function estimates of Anatolian crustal thickness. Station names and locations, number of receiver functions modeled, estimated Moho depth, and technique employed are all given where available. Note that elevations are extracted from topographic grid that is low-pass filtered for wavelengths &gt; 30 km. Dataset S2 is drainage inventory as a multi-segment .csv file. Format is: latitude (◦),longitude (◦), elevation (m), longitudinal distance (m) and upstream drainage area (m^2). River profiles were extracted from SRTM digital elevation model of using Arc-GIS flow-routing algorithms. Dataset S3 is compilation of all available geochemical analyses for Neogene magmatic rocks from Anatolia. Ages are assigned either by radiometric dating or by stratigraphic relationships. Although only samples with MgO &gt; 5 wt% were used in this study, samples with MgO &gt; 4 wt% are included for completeness. Major elements are normalized so that the sum of weights = 100 wt%. We also provide estimates of melt equilibration pressure and temperature.
DOI: 10.6084/m9.figshare.c.3628391_d1.v1
title: MOESM2 of Prevalence and risk factors for overweight horses at premises in Sweden assessed using official animal welfare control data

description: Additional file 2: Table S2. Inspection characteristics associated with overweight horses.
DOI: 10.6084/m9.figshare.c.3628379_d2.v1
title: Additional file 4: of A functional genomics screen identifies an Importin-α homolog as a regulator of stem cell function and tissue patterning during planarian regeneration

description: Lists all genes for which RNAi experiments were performed, with identifiers for the 5′- and 3′-end sequence reads or primer sequences for each clone used. The genes for which knockdown produced a phenotype are marked with the names they are referred to by in Table 1. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3628379_d3.v1
title: Additional file 1: of A functional genomics screen identifies an Importin-Îą homolog as a regulator of stem cell function and tissue patterning during planarian regeneration

description: Identifies the ESTs matched to each Gene ID and provides their sequence. (XLSX 4469 kb)
DOI: 10.6084/m9.figshare.c.3628379_d4.v1
title: Additional file 3: of A functional genomics screen identifies an Importin-α homolog as a regulator of stem cell function and tissue patterning during planarian regeneration

description: Provides identifiers for 5′ and 3′ EST sequence reads or primer sequences for clones used to make riboprobes. “Blastema”, “Neoblasts” and “CNS” columns indicate whether or not each gene was expressed in each of those tissues based on WISH. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3628403_d1.v1
title: MOESM1 of 
                     l-Methionine repressible promoters for tuneable gene expression in Trichoderma reesei

description: Additional file 1: Table S1. T. reesei orthologues of l-methionine biosynthesis related proteins and genomic location of the corresponding gene; Table S2. Oligonucleotides used in this study; Figure S1. Metabolic pathway of sulphate assimilation and l-methionine biosynthesis; Figure S2. Gene copy number estimation of T. reesei sucA transformants by qPCR; Figure S3. Gene copy number estimation of T. reesei lacZ transformants by qPCR; Figure S4. Phylogenetic analysis of TauD like dioxygenases.
DOI: 10.6084/m9.figshare.c.3628391_d2.v1
title: MOESM3 of Prevalence and risk factors for overweight horses at premises in Sweden assessed using official animal welfare control data

description: Additional file 3: Table S3. Resource- and management-based characteristics associated with overweight horses.
DOI: 10.6084/m9.figshare.c.3628397_d2.v1
title: Additional file 7: of A transposable element insertion in the susceptibility gene CsaMLO8 results in hypocotyl resistance to powdery mildew in cucumber

description: Full table of 115 resequenced accessions. The amount of reads identified is given at the overlap between CsaMLO8 and the start of the insertion in forward (TE start-F) and reverse (TE start-R) direction, at the overlap between the end of the insertion and CsaMLO8 in forward (TE end-F) and reverse (TE end-R) direction, and at the site of the insertion with only CsaMLO8 sequence in forward (WT-F) and reverse (WT-R) direction. (XLSX 22Â kb)
DOI: 10.25345/c5804xx4q
title: MassIVE MSV000096676 - Extracellular vesicles of a phytobeneficial bacterium trigger distinct systemic response in plant
title: Bacterial extracellular vesicles (EVs) are lipidic shuttles that play roles in virulence, inter-species competition, and in the induction of the host immune response. While they have primarily been investigated in animal-bacteria interactions, knowledge regarding phytobacterial EVs remains limited. Recent findings revealed that various biotic factors like hydroxycinnamic acids can regulate EVs production. Hydroxycinnamic acids, such as ferulic acid, are lignin components abundantly released in the plant environment, where they impact the ecology of numerous phytobacteria. Azospirillum sp. B510, a phytobeneficial bacterium, induces the accumulation of hydroxycinnamic acid derivatives in the plant and can metabolize them as carbon sources. We hypothesized that the presence of ferulic acid in the environment of Azospirillum sp. B510 would influence its EVs production in terms of size, quantity, and cargo. Conversely, we also proposed that EVs from this phytobacterium would influence plant metabolites and defense gene expression. Our results show both that ferulic acid (mimicking the plant environment) influences the content of EVs released by Azospirillum sp. B510 and that bacterial EVs also impact plant physiology at a systemic level according to their cargoes. This research provides the first evidence of a global effect of bacterial EVs on the plant and highlights the dynamics of plant-bacteria interactions mediated by EVs.
DOI: 10.6084/m9.figshare.c.3628391_d3.v1
title: MOESM1 of Prevalence and risk factors for overweight horses at premises in Sweden assessed using official animal welfare control data

description: Additional file 1: Table S1. Premises characteristics associated with overweight horses.
DOI: 10.6084/m9.figshare.c.3628406_d1.v1
title: Additional file 7: of Detailed phenotyping identifies genes with pleiotropic effects on body composition

description: The signed t-values of SNP effects (450,001 to 510,174 in â  chromosome: positionâ   order) for the 56 traits used in multi-trait, meta-analysis. (GZ 12388Â kb)
DOI: 10.6084/m9.figshare.c.3628406_d7.v1
title: Additional file 5: of Detailed phenotyping identifies genes with pleiotropic effects on body composition

description: The signed t-values of SNP effects (150,001 to 300,000 in â  chromosome: positionâ   order) for the 56 traits used in multi-trait, meta-analysis. (GZ 30615Â kb)
DOI: 10.6084/m9.figshare.c.3628427_d1.v1
title: Additional file 2: of Age-related association of venom gene expression and diet of predatory gastropods

description: Shell lengths of each sample and raw C values of the six conotoxin genes and the Î˛-tubulin gene. (XLS 37 kb)
DOI: 10.15468/dl.s7n9uy
title: Occurrence Download

description: A dataset containing 3126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Occurrence evidence, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Fossil, Living Specimen)",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-115.70201 32.66419,-115.45354 32.67013,-115.4577 33.00824,-115.70422 33.00406,-115.70201 32.66419))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3126 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037854-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3628454_d1.v1
title: Additional file 7: Table S6. of 
                     Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes

description: Putative cytochrome P450 monooxygenases. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3628454_d3.v1
title: Additional file 12: Table S11. of 
                     Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes

description: SSRs in root transcripts. (XLS 1818 kb)
DOI: 10.6084/m9.figshare.c.3628454_d4.v1
title: Additional file 3: Table S2. of 
                     Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes

description: Annotation of leaf transcripts to the Uniprot database. (XLS 17060 kb)
DOI: 10.6084/m9.figshare.c.3628475_d1.v1
title: Additional file 3: of Genomic and functional analyses unveil the response to hyphal wall stress in Candida albicans cells lacking Î˛(1,3)-glucan remodeling

description: Class 2: Transcripts that are less abundant in the phr1Î  mutant than in the wild type. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3628454_d5.v1
title: Additional file 5: Table S4. of 
                     Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes

description: KEGG pathways represented by leaf transcripts. (XLS 719 kb)
DOI: 10.6084/m9.figshare.c.3628481_d1.v1
title: Additional file 1: Table S1. of Epigenomic and metabolic responses of hypothalamic POMC neurons to gestational nicotine exposure in adult offspring

description: Gene list. Read-pairs were aligned by STAR to the mouse reference genome. STAR alignments were run through HTSeq for determination of read-pair counts by genes. Genes are denoted by their Ensembl gene ID, gene symbol, and gene type (columns Aâ  C). EdgeR calculated average gene expression values across all offspring (column D) and fold-changes between nicotine-exposed and control offspring (FC (N/C), column E). EdgeR (column F), baySeq (column G), and DESeq (column H) determined differential gene expression. FDR false discovery rate-adjusted p value, CPM counts per million. (XLSX 2364 kb)
DOI: 10.17863/cam.87021
title: Imaging glioblastoma response to radiotherapy using ²H magnetic resonance spectroscopy measurements of fumarate metabolism_raw data

description: 1. Main and supplementary raw data. Zip folder with 9 Excel files containing the raw measurements of main RAW_Figure_1 (1C,1D,1E,1F,1G,1H,1I,1J,1K,1L,1M - NMR spectra were phased, baseline corrected and peak integrals calculated using Topspin), RAW_Figure_2 (2A,2C,2E,2F,2H,2J,2K,2M,2O - Spectra were zero- and first-order phase corrected, and the peaks fitted with the AMARES toolbox), RAW_Figure_4 (4G,4H,4N,4O,4W,4FX - Images were analyzed using a CytoNuclear v1.6 algorithm on HALO v3.0.311.293. Shown are percentage of positive cells), RAW_Figure_5 (5B,5D,5F - ¹³C-malate/¹³C-fumarate ratios are shown from ¹³C spectra. Areas under the peaks were calculated by fitting of the resonances after spatial Fourier transformation), RAW_Figure_6 (6B,6C,6E,6F,6H,6I - Signals from the image series were converted, on a pixel-by-pixel basis, to a contrast-agent concentration by assuming an R1 relaxivity of the contrast agent of 2.7 s‾¹mM‾¹. Shown are contrast agent concentration at the indicated times and the area under the uptake curve (AUC)), RAW_Figure_7 (7C,7G,7K - shown are the mean ADC measured along the slice-selective direction as well as histograms of ADC values.) and RAW_Supplementary_figure_5 (5A,5B - Fumarase activity was determined using a colorimetric kit and measurements were made using a PHERAstar FS microplate reader. Shown here is the fumarase activity (units / g protein in cells and tumor extracts)), RAW_Supplementary_figure_6 (6A,6B,6C - tumor volumes calculated from T₂-weighted ¹H images. The total volume of the tumor was calculated by multiplying the sum of the voxels by 1 x (40/256)² = mm³), RAW_Supplementary_figure_7 (7A,7B,7C - Kaplan-Meier survival curves for tumor-bearing mice that were untreated or treated with chemo-radiotherapy. P values were determined using the log-rank test). 2. Raw MRI data. Zip folder containing the raw DICOM data for the in vivo ²H-fumarate and ¹³C hyperpolarized fumarate - MRI experiments.
DOI: 10.6084/m9.figshare.c.3628454_d6.v1
title: Additional file 13: Table S12. of 
                     Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes

description: SSRs in specialized metabolic pathway transcripts. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3628475_d2.v1
title: Additional file 1: of Genomic and functional analyses unveil the response to hyphal wall stress in Candida albicans cells lacking β(1,3)-glucan remodeling

description: Transcriptional profile of wild type and phr1Δ cells during induction of hyphal growth. (XLSX 735 kb)
DOI: 10.17863/cam.8273
title: Research data supporting: "What colour is penguin guano?"

description: High-resolution calibrated reflectance spectra (350-2500 nm) of samples of penguin guano, collected on Signy Island, Antarctica, between November 2014 and January 2015. Most samples are from Adélie penguins, though some Chinstrap and Gentoo penguins are also included. A few samples of penguin stomach contents, consisting of partially digested krill and fish, are also included. All samples have accompanying photographs. A peer-reviewed paper describing the data collection methods and interpretation of the results is currently under review.
DOI: 10.6084/m9.figshare.c.3628454_d11.v1
title: Additional file 6: Table S5. of 
                     Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes

description: KEGG pathways represented by root transcripts. (XLS 710 kb)
DOI: 10.6084/m9.figshare.c.3628499_d2.v1
title: MOESM3 of Abnormal X chromosome inactivation and sex-specific gene dysregulation after ablation of FBXL10

description: Additional file 3: Table S2. RefSeq genes with abnormal expression in females and males Fbxl10 T/T E9.5 embryos as compared to wild type.
DOI: 10.6084/m9.figshare.c.3628505_d1.v1
title: Additional file 2: of ViromeScan: a new tool for metagenomic viral community profiling

description: List of the bacteria and corresponding genome IDs utilized in the bacterial read filtering procedure during the ViromeScan pipeline. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3628454_d12.v1
title: Additional file 8: Table S7. of 
                     Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes

description: Putative Glycosyltransferases. (XLS 195 kb)
DOI: 10.17863/cam.26221
title: Research data supporting "Dextran diffusivity values in freeze-dried collagen scaffolds" (Version 2)

description: Numerical values of diffusivity of dextran in freeze-dried collagen scaffolds, as measured by FRAP and standard Fickian theory. An example set of time-lapse images of diffusion into a scaffold is also given.
DOI: 10.6084/m9.figshare.c.3628499_d3.v1
title: MOESM2 of Abnormal X chromosome inactivation and sex-specific gene dysregulation after ablation of FBXL10

description: Additional file 2: Table S1. Female-specific mortality of Fbxl10 ∆−2/∆−2 mutants. Observed frequencies of indicated genotype in males and females at birth and at 21 days after birth.
DOI: 10.6084/m9.figshare.c.3628505_d2.v1
title: Additional file 3: of ViromeScan: a new tool for metagenomic viral community profiling

description: List of the genome IDs and microorganisms used to construct the synthetic communities. (XLSX 37Â kb)
DOI: 10.17863/cam.105420
title: Research Data Supporting "Translational Eigenstates of He@C60 from four-dimensional ab initio Potential Energy Surfaces interpolated using Gaussian Process Regression"

description: Dataset supporting arxiv and JCP paper. The electronic structure calculations were done using the FermiONs++ package from the Ochsenfeld group. The calculations to generate the translational eigenstates and wavefunction distances were done using an in-house Python code. The data required to generate the tables and figures for the paper, alongside bash and python scripts to generate the PES are found in this directory. This is structured as follows: - coords.txt Text file containing the input training coordinates for the Gaussian Process. - results__ccpvz.txt Method is mp2 or rpa. Basis is t/q/5. Outfile generated by FermiONS, with energies indexed as given by coords.txt - extract_FermiONS_energies.bash Bash script to parse FermiONS results files, and extract only the energies. - _ccpvz.dat Method is mp2 or rpa. Basis is t/q/5. Energies as indexed by coords.txt, parsed from the bash script. - generate_cbs_energies.py Python script to CBS extrapolate the SCF and correlation energies from mp2/rpa data. - HeC60_4DCBS.dat Data file containing coords and corresponding CBS energies for multiple electronic structure methods. - HeC60_PES.py Python script to generate the potential from a Gaussian Process. - HeC60_4D.npz data is energies/PES/PES_confidence_interval. Numpy compressed file containing the translational energies/PES data/PES confidence interval data. He3 and He4 energies in different files. - mp2_kernels_.txt Moment is mean or confidence_interval. Text file containing the lower and upper bound of the specified MP2 PES for multiple choices of kernels. - hellinger_distances_1d.txt Text file containing the Hellinger distances from each electronic structure method to the 1D. - electronic_structure_distances_.txt Angular momentum is s/p/d/f. Text file containing the matrix of Hellinger distances between electronic strucutre methods for one of the specified near degenerate set of nuclear orbitals. - plot_figures_for_paper.py Python script to generate the figures. There is 1 main function which takes the figure number and a boolean as to whether it is in the SI. The rest of the script is helper functions. - C60_.xyz Method is mp2/rpa. xyz file of the C60 at the equilibrium cage radius of He@C60 predicted by the electronic structure method. - _isosurface_.cube Method is mp2/rpa. Angular momentum is s/p/d/f. Cube file containing the wavefunction data for one of the specified near degenerate set of nuclear orbitals.