cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19470374
title: Additional file 3 of Comparative transcriptome analysis reveals significant differences in gene expression between pathogens of apple Glomerella leaf spot and apple bitter rot

description: Additional file 3: Table S4. The KEGG pathway of unigenes of the Colletotrichum aenigma isolate GC20190701 and C. gloeosporioides isolates FL180903, FL180906.
DOI: 10.6084/m9.figshare.22614746.v1
title: Additional file 2 of Prenatal social support in low-risk pregnancy shapes placental epigenome

description: Additional file 2: Tables S7–S12. Enrichment and depletion of CpGs in placenta associated with maternal social support in different cell types and tissues for DNAase hypersensitive sites, chromatin marks and H3 histone marks in all pregnancies. Tables S13–S18. Enrichment and depletion of CpGs in placenta associated with maternal social support in different cell types and tissues for DNAase hypersensitive sites, chromatin marks and H3 histone marks in pregnancies with male fetus. Tables S19–S24. Enrichment and depletion of CpGs in placenta associated with maternal social support in different cell types and tissues for DNAase hypersensitive sites, chromatin marks and H3 histone marks in pregnancies with female fetus.
DOI: 10.6084/m9.figshare.19470395.v1
title: Additional file 1 of Genome-wide identification, evolutionary and expression analyses of LEA gene family in peanut (Arachis hypogaea L.)

description: Additional file 1.
DOI: 10.6084/m9.figshare.19470383.v1
title: Additional file 6 of Comparative transcriptome analysis reveals significant differences in gene expression between pathogens of apple Glomerella leaf spot and apple bitter rot

description: Additional file 6: Table S7. KEGG enrichment pathways DEGs between the Colletotrichum aenigma isolate GC20190701 and C. gloeosporioides isolate FL180906.
DOI: 10.5281/zenodo.10493364
title: Source Data
DOI: 10.5281/zenodo.10493365
title: Source Data
DOI: 10.6084/m9.figshare.22615108
title: Additional file 2 of SMAD9-MYCN positive feedback loop represents a unique dependency for MYCN-amplified neuroblastoma

description: Additional file 2.
DOI: 10.6084/m9.figshare.19993870.v1
title: Additional file 3 of Axial length shortening after orthokeratology and its relationship with myopic control

description: Additional file 3.
DOI: 10.6084/m9.figshare.22615111
title: Additional file 3 of SMAD9-MYCN positive feedback loop represents a unique dependency for MYCN-amplified neuroblastoma

description: Additional file 3.
DOI: 10.6084/m9.figshare.22614448
title: Additional file 1 of Causal relationships between migraine and microstructural white matter: a Mendelian randomization study

description: Additional file 1: Appendix S1. WM IDPs. Detailed description on 360 WM IDPs included in the present study. Appendix S2. Genetic correlation. The results of genetic correlation between WM IDPs and migraine. Appendix S3. Members of the IHGC. The members of the International Headache Genetics Consortium.
DOI: 10.6084/m9.figshare.22614448.v1
title: Additional file 1 of Causal relationships between migraine and microstructural white matter: a Mendelian randomization study

description: Additional file 1: Appendix S1. WM IDPs. Detailed description on 360 WM IDPs included in the present study. Appendix S2. Genetic correlation. The results of genetic correlation between WM IDPs and migraine. Appendix S3. Members of the IHGC. The members of the International Headache Genetics Consortium.
DOI: 10.5281/zenodo.10632937
title: Input SWE, precipitation, and streamflow data for NRCS/INSTAAR/JPL STC-MODSCAG fSCA/M4 Study

description: This archive contains supporting data for a study testing use of the STC-MODSCAG fractional snow-covered area product as forcing data for the AI-based M4 water supply forecasting model.  The study was performed by S.W. Fleming, K. Rittger, C. Tagliatela, and I. Graczyk.  The data archived here consists of predictive and target data used in the M4 model (Natural Resources Conservation Service National Water and Climate Center's GitHub public repository for M4 (https://github.com/nrcs-nwcc/M4) in the four study watersheds.  For STC-MODSCAG data, references can be founds in the References section herein. These datasets consist of three files: an Excel spreadsheet containing observational USGS streamflow and in-situ SNOTEL and COOP accumulation precipitation data, and two zip files containing the STC-MODSCAG fSCA data at native resolution, partially aggregated into elevation band-averages, and fully aggregated into a watershed-wide mean, along with some summary plots.  Filenames are self-explanatory.
DOI: 10.5281/zenodo.10632938
title: Input SWE, precipitation, and streamflow data for NRCS/INSTAAR/JPL STC-MODSCAG fSCA/M4 Study

description: This archive contains supporting data for a study testing use of the STC-MODSCAG fractional snow-covered area product as forcing data for the AI-based M4 water supply forecasting model.  The study was performed by S.W. Fleming, K. Rittger, C. Tagliatela, and I. Graczyk.  The data archived here consists of predictive and target data used in the M4 model (Natural Resources Conservation Service National Water and Climate Center's GitHub public repository for M4 (https://github.com/nrcs-nwcc/M4) in the four study watersheds.  For STC-MODSCAG data, references can be founds in the References section herein. These datasets consist of three files: an Excel spreadsheet containing observational USGS streamflow and in-situ SNOTEL and COOP accumulation precipitation data, and two zip files containing the STC-MODSCAG fSCA data at native resolution, partially aggregated into elevation band-averages, and fully aggregated into a watershed-wide mean, along with some summary plots.  Filenames are self-explanatory.
DOI: 10.6084/m9.figshare.22615340
title: Additional file 1 of GACNNMDA: a computational model for predicting potential human microbe-drug associations based on graph attention network and CNN-based classifier

description: Additional file 1: The newly downloaded dataset of diseases.
DOI: 10.6084/m9.figshare.22615117.v1
title: Additional file 5 of SMAD9-MYCN positive feedback loop represents a unique dependency for MYCN-amplified neuroblastoma

description: Additional file 5.
DOI: 10.6084/m9.figshare.22615349
title: Additional file 4 of GACNNMDA: a computational model for predicting potential human microbe-drug associations based on graph attention network and CNN-based classifier

description: Additional file 4: The newly downloaded dataset of drug-disease associations.
DOI: 10.6084/m9.figshare.22615358
title: Additional file 7 of GACNNMDA: a computational model for predicting potential human microbe-drug associations based on graph attention network and CNN-based classifier

description: Additional file 7: The newly downloaded dataset of microbe-disease associations.
DOI: 10.5281/zenodo.7761842
title: Automated Profiling of Gene Function During Embryonic Development

description: Systematic functional profiling of the gene set that supports multicellular organismal development is an important current challenge. Here, we tackle this challenge in the context of C. elegans embryogenesis by capturing the evolution of gene knockdown phenotypes using 4D imaging and developing an  automated approach to analyze and compare complex, diverse developmental phenotypes. The automated approach quantifies embryonic features— including germ layer cell numbers, tissue position, and tissue shape—to generate temporal feature curves whose parametrization yields numerical  phenotypic signatures. In conjunction with a new similarity metric that operates across phenotypic space, these signatures enabled comparison of 500 gene knockdowns. Accessible in a redesigned Phenobank web-portal, this dataset represents ~25% of essential development genes. This approach correctly classifies known developmental regulators, annotates functions for uncharacterized genes, identifies new gene and pathway relationships, and establishes the foundation for comprehensive analysis of the gene  set required to build a multicellular organism.
DOI: 10.5281/zenodo.7761843
title: Automated Profiling of Gene Function During Embryonic Development

description: Systematic functional profiling of the gene set that supports multicellular organismal development is an important current challenge. Here, we tackle this challenge in the context of C. elegans embryogenesis by capturing the evolution of gene knockdown phenotypes using 4D imaging and developing an  automated approach to analyze and compare complex, diverse developmental phenotypes. The automated approach quantifies embryonic features— including germ layer cell numbers, tissue position, and tissue shape—to generate temporal feature curves whose parametrization yields numerical  phenotypic signatures. In conjunction with a new similarity metric that operates across phenotypic space, these signatures enabled comparison of 500 gene knockdowns. Accessible in a redesigned Phenobank web-portal, this dataset represents ~25% of essential development genes. This approach correctly classifies known developmental regulators, annotates functions for uncharacterized genes, identifies new gene and pathway relationships, and establishes the foundation for comprehensive analysis of the gene  set required to build a multicellular organism.
DOI: 10.6084/m9.figshare.22615304.v1
title: Additional file 2 of Characterization of the REVEILLE family in Rosaceae and role of PbLHY in flowering time regulation

description: Additional file 2: Table S1. Characteristics of RVE family members in seven Rosaceae species. Table S2. Numbers of RVE gene pairs from different duplication events in seven Rosaceae species. Table S3. Ka and Ks calculation of duplicated RVE gene pairs in seven Rosaceae species. Table S4. The primers used in the assays.
DOI: 10.6084/m9.figshare.22615264
title: Additional file 2 of The mitochondrial genome of Heterosentis pseudobagri (Wang & Zhang, 1987) Pichelin & Cribb, 1999 reveals novel aspects of tRNA genes evolution in Acanthocephala

description: Additional file 2. Comparative analyses of the mitogenomicacanthocephalan dataset.
DOI: 10.6084/m9.figshare.22614749
title: Additional file 3 of Prenatal social support in low-risk pregnancy shapes placental epigenome

description: Additional file 3: Table S25. Differentially methylated regions in placenta associated with maternal social support in all pregnancies. Table S26. Differentially methylated regions in placenta associated with maternal social support in pregnancies with male fetus. Table S27. Differentially methylated regions in placenta associated with maternal social support in pregnancies with female fetus.
DOI: 10.6084/m9.figshare.22615145.v1
title: Additional file 7 of Inhibition of 2-arachidonoylglycerol degradation enhances glial immunity by single-cell transcriptomic analysis

description: Additional file 7. ScRNA-supplementary tables.
DOI: 10.6084/m9.figshare.22614934
title: Additional file 3 of Global burden of prostate cancer attributable to smoking among males in 204 countries and territories, 1990–2019

description: Additional file 3: Table S7. Percentage change across countries of the fraction of all prostate cancer deaths that are attributable to smoking (95% UI).
DOI: 10.6084/m9.figshare.22615343
title: Additional file 2 of GACNNMDA: a computational model for predicting potential human microbe-drug associations based on graph attention network and CNN-based classifier

description: Additional file 2: The newly downloaded dataset of drugs.
DOI: 10.6084/m9.figshare.22615588
title: Additional file 16 of Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes

description: Additional file 16: Supplementary Table 7. Detailed taxonomy classification of core rice endophytic microbiota with 70% occurrence in the collected samples.
DOI: 10.25919/zs5m-y871
title: Parkes observations for project P1041 semester 2023OCTS_03

description: We propose to continue our long-term timing campaign of millisecond pulsars (MSPs) discovered in the Globular Cluster Omega Centauri. So far, we have discovered seven MSPs and obtained coherent timing solutions for five of them. Monthly observations with the Parkes Ultra-Wideband Low (UWL) receiver system are requested to time known pulsars and search for new pulsars. With a timing baseline of ~3.5 yr we are able to measure the derivative of the spin frequency for the first five pulsars. Upper limits on the pulsar line-of-sight acceleration are estimated and compared with predictions based on analytical models of the cluster. The linearly polarised emission from PSR J1326-4728 yields a rotation measure of -18(8) rad/m^2. Long-term timing observations of these MSPs will provide us a new way to (1) study the dynamics of the core and constrain the existence of any intermediate-mass black holes; (2) reveal the origin of Gamma-ray emission from the core and put stringent constraints on dark matter parameters; (3) study Galactic ionised medium and magnetic fields on parsec scales.
DOI: 10.6084/m9.figshare.22614749.v1
title: Additional file 3 of Prenatal social support in low-risk pregnancy shapes placental epigenome

description: Additional file 3: Table S25. Differentially methylated regions in placenta associated with maternal social support in all pregnancies. Table S26. Differentially methylated regions in placenta associated with maternal social support in pregnancies with male fetus. Table S27. Differentially methylated regions in placenta associated with maternal social support in pregnancies with female fetus.
DOI: 10.6084/m9.figshare.22614958
title: Additional file 11 of Global burden of prostate cancer attributable to smoking among males in 204 countries and territories, 1990–2019

description: Additional file 11: Table S6. Decomposition analysis of the contribution of population growth and population aging on the global prostate cancer burden due to smoking.
DOI: 10.6084/m9.figshare.22615343.v1
title: Additional file 2 of GACNNMDA: a computational model for predicting potential human microbe-drug associations based on graph attention network and CNN-based classifier

description: Additional file 2: The newly downloaded dataset of drugs.
DOI: 10.15131/shef.data.23946990
title: The role of the organic cation in developing efficient green perovskite LEDs based on 2D/3D perovskite heterostructures

description: Characterisation data for perovskite LED study.
Atomic force microscopy data have file type .ibw, these can be opened using Gwyddion an open source AFM image analysis software. File naming system code can be found in attached naming system.txt file.
Other data is presented as .csv files and comprises device characterisation data, grazing incidence x-ray scattering, photoluminescence spectroscopy, UV-vis spectroscopy, ultraviolet photoelectron spectroscopy.
DOI: 10.6084/m9.figshare.23564774.v1
title: Additional file 1 of Genome-wide identification and immune response analysis of mitogen-activated protein kinase cascades in tea geometrid, Ectropis grisescens Warren (Geometridae, Lepidoptera)

description: Additional file 1.
DOI: 10.6084/m9.figshare.22615721.v1
title: Additional file 2 of Barriers and facilitators to physical activity for young adult women: a systematic review and thematic synthesis of qualitative literature

description: Additional file 2.
DOI: 10.6084/m9.figshare.22615873
title: Additional file 3 of Transcriptomics reveals the molecular mechanisms of flesh colour differences in eggplant (Solanum melongena)

description: Additional file 3: Table S2. DEGs between NC7 and BL.
DOI: 10.6084/m9.figshare.22615912
title: Additional file 3 of Influential factors and transcriptome analyses of immature diploid embryo anthocyanin accumulation in maize

description: Additional file 3: Supplementary Table S3. KEGG pathway analysis of DEGs under light.
DOI: 10.6084/m9.figshare.22615870.v1
title: Additional file 2 of Transcriptomics reveals the molecular mechanisms of flesh colour differences in eggplant (Solanum melongena)

description: Additional file 2: Table S1. Data qualities statistics of RNA-seq in eggplant flesh.
DOI: 10.6084/m9.figshare.16530678.v1
title: Associations between sexual orientation, financial security and relationships with family and peers during the COVID-19 pandemic in Nigeria

description: <b>Background: </b>This study aimed to determine whether factors associated with financial insecurity during the COVID-19 pandemic were associated with worsening relationships with family, peers and friends of sexual minorities living in Nigeria. <b>Methods:</b> Data were collected using an online survey conducted from 29<sup>th</sup> June to 31<sup>st</sup> December 2020. The outcome variable was the quality of relationship with family, friends and peers during the COVID-19 pandemic. The explanatory variables were the sexual orientation (lesbians, gays, bisexuals, heterosexual), COVID-19 status, and financial security (job loss or reduced/lost wages because of the COVID-19 pandemic). Multilevel logistic regression analysis models with robust estimation were built and used to assess the association between the outcome and explanatory variables. The models were adjusted for sociodemographic profile (age, sex at birth, education status). <br>
DOI: 10.5281/zenodo.5474584
title: Gallinago gallinago SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5474583
title: Gallinago gallinago SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5475442
title: An open dataset of IPCC reports 'references (6th Assessment Cycle) – Version 1

description: We provide a first version of an open dataset of publications cited by the IPCC reports of the 6<sup>th</sup> Assessment Cycle (Reports — IPCC) The lists were extracted from the reference sections of three special reports and the first assessment report. [see Figure 1]. The data are presented in two formats: one on hand in text files with a list of references for each section of the reports (generally each chapter) and one other hand a structured format (json) with identifiers for the documents and the sections, the reference in string format as well as the extracted digital object identifiers (dois). In this first version, the dois extracted are mainly those which are provided in the references. The table 1 show the number of references and doi for each report. We plan, for subsequent releases, following enhancements: Further quality assurance of dois. We note that some entries are provided in references of the IPCC reports without dois although they are indexed in Crossref. The table 2 shows substantial differences in doi coverage among reference sections. Spot checks of the dataset suggest that those differences are mainly due to referencing behaviour of the section’s authors rather than on type of documents cited. We aim in the next version to complete those missing dois and systematically verify the dois included in the references. Expand the references lists to reports from past assessment cycles In addition, we plan a more detailed documentation of our dataflow & extraction process and to demonstrate how it can be used to create open, community curated, datasets of references of others non-scholarly documents. The json files have each two keys (1) schema with the structure of the table and (2) data: with the records. A simple way to read them into table is via a pandas dataframe <em>import pandas as pd</em> <em>df = pd.read_json(file_name.json, orient = ‘table’)</em> <strong>Acknowledgment</strong> We thank Valentin Hancu (EC/DG ECFIN) - for fruitful discussions on the data extraction process. <strong>Disclaimer: </strong> The views expressed in this paper are the author’s. They do not reflect the views or official positions of the European Commission.
description: this version includes also a zip files with the references
DOI: 10.5281/zenodo.5473877
title: An open dataset of IPCC reports 'references (6th Assessment Cycle) – Version 1

description: We provide a first version of an open dataset of publications cited by the IPCC reports of the 6<sup>th</sup> Assessment Cycle (Reports — IPCC) The lists were extracted from the reference sections of three special reports and the first assessment report. [see Figure 1]. The data are presented in two formats: one on hand in text files with a list of references for each section of the reports (generally each chapter) and one other hand a structured format (json) with identifiers for the documents and the sections, the reference in string format as well as the extracted digital object identifiers (dois). In this first version, the dois extracted are mainly those which are provided in the references. The table 1 show the number of references and doi for each report. We plan, for subsequent releases, following enhancements: Further quality assurance of dois. We note that some entries are provided in references of the IPCC reports without dois although they are indexed in Crossref. The table 2 shows substantial differences in doi coverage among reference sections. Spot checks of the dataset suggest that those differences are mainly due to referencing behaviour of the section’s authors rather than on type of documents cited. We aim in the next version to complete those missing dois and systematically verify the dois included in the references. Expand the references lists to reports from past assessment cycles In addition, we plan a more detailed documentation of our dataflow & extraction process and to demonstrate how it can be used to create open, community curated, datasets of references of others non-scholarly documents. The json files have each two keys (1) schema with the structure of the table and (2) data: with the records. A simple way to read them into table is via a pandas dataframe <em>import pandas as pd</em> <em>df = pd.read_json(file_name.json, orient = ‘table’)</em> <strong>Acknowledgment</strong> We thank Valentin Hancu (EC/DG ECFIN) - for fruitful discussions on the data extraction process. <strong>Disclaimer: </strong> The views expressed in this paper are the author’s. They do not reflect the views or official positions of the European Commission.
description: this version includes also a zip files with the references
DOI: 10.6084/m9.figshare.14751753.v3
title: ARCTIC MARINE FOREST DISTRIBUTION MODELS SHOWCASE SEVERE NET LOSSES AND TEMPERATE SUCCESSION UNDER CLIMATE CHANGE

description: Our main objective was to investigate potential gains and losses in northern hemisphere marine forest habitat along temperate and Arctic coastlines under different climate change scenarios. In particular, we sought to investigate anticipated responses according to three ecosystem distribution categories: marine forests restricted to the Arctic (i.e. oceanic benthic waters with a mean average annual temperature of ca. &lt;5oC), widely distributed species occurring in temperate and Arctic waters, and species restricted to cold and warm temperate waters with no current range in the Arctic. <br>The datasets provided here include the occurrence records for training models, area calculations for both threshold and probabilistic predictions for each species and each climate change scenario, and the maxent predictions for each species, including the stacked predictions, and for each climate change scenario.<br><br>v2 provides updated models using long term min and max benthic temperature layers, which was done to better reflect longer term temperature trends. The original models (which used absolute min and max benthic temperature layers) are provided in the zip folder "old_models_absolute_min_max_temp.zip". Also included are the accompanying publication figures for the old models. Updated figures will be featured in the final publication of this work. Model performance metrics are also provided in v2.<br>For threshold predictions, yellow=occurrence, blue=no occurrence. For probabilistic predictions, pink-&gt;blue-&gt;green-&gt;orange-&gt;red refers to 1.0-&gt;0 probability of occurrence.