cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9631085.v1
title: Additional file 5: of Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines

description: Table S5. DEGs related to typical resistance mechanisms against F. graminearum and F. pseudograminearum. Log2Fold Changes for each gene in different comparisons were listed (FDR
DOI: 10.6084/m9.figshare.9631091.v1
title: Additional file 6: of Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines

description: Table S6. GO annotations of up- (Sheet 1) and down-regulated (Sheet 2) DEGs and background references (Sheet 3) used in GO enrichment analysis. (XLSX 9087 kb)
DOI: 10.6084/m9.figshare.9631079
title: Additional file 4: of Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines

description: Table S4. Annotation of non-synonymous SNPs in genes within the consensus region. $: â -â means that SNPs were not found in the high confidence (HC) gene. * blank cell means no amino acid change was detected. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.9631073
title: Additional file 3: of Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines

description: Table S3. DEGs and SNP-bearing genes within the SNP consensus region across the three NIL pairs. Log2Fold Changes for each of the genes in different comparisons were listed (FDR
DOI: 10.6084/m9.figshare.9631073.v1
title: Additional file 3: of Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines

description: Table S3. DEGs and SNP-bearing genes within the SNP consensus region across the three NIL pairs. Log2Fold Changes for each of the genes in different comparisons were listed (FDR
DOI: 10.6084/m9.figshare.9631079.v1
title: Additional file 4: of Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines

description: Table S4. Annotation of non-synonymous SNPs in genes within the consensus region. $: â -â means that SNPs were not found in the high confidence (HC) gene. * blank cell means no amino acid change was detected. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.9631067
title: Additional file 2: of Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines

description: Table S2. Enriched GO terms associated with DEGs and HEGs. In the comparison column, ‘M’ = mock-inoculation; ‘I’ = Fp-inoculation; ‘R’ = resistant isoline; ‘S’ = susceptible isoline. ‘O’ column stands for three domains, ‘C’ = cellular component; ‘F’ = molecular function; ‘P’ = biological process. ‘#list’ means the number of term-specific genes from the input list. ‘#bg’ means the number of term-specific genes from the background. FDR
DOI: 10.6084/m9.figshare.9631058
title: Additional file 26: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S20. List of primers used for qRT-PCR study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9631061
title: Additional file 1: of Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines

description: Table S1. Primer sequences and results of qPCR validation of RNA-Seq experiments. qPCR results for 3 selected DEGs between the mock and inoculated isolines among the three pairs of NILs. The fold-change of qPCR results for each gene was generally in agreement with RNA-seq results. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9631067.v1
title: Additional file 2: of Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines

description: Table S2. Enriched GO terms associated with DEGs and HEGs. In the comparison column, ‘M’ = mock-inoculation; ‘I’ = Fp-inoculation; ‘R’ = resistant isoline; ‘S’ = susceptible isoline. ‘O’ column stands for three domains, ‘C’ = cellular component; ‘F’ = molecular function; ‘P’ = biological process. ‘#list’ means the number of term-specific genes from the input list. ‘#bg’ means the number of term-specific genes from the background. FDR
DOI: 10.6084/m9.figshare.9631055
title: Additional file 25: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S19. Differentially expressed TF involved in after 24â h recovery condition of both CSV and CTV genotypes with annotation. (XLS 66 kb)
DOI: 10.6084/m9.figshare.9631061.v1
title: Additional file 1: of Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines

description: Table S1. Primer sequences and results of qPCR validation of RNA-Seq experiments. qPCR results for 3 selected DEGs between the mock and inoculated isolines among the three pairs of NILs. The fold-change of qPCR results for each gene was generally in agreement with RNA-seq results. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9631055.v1
title: Additional file 25: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S19. Differentially expressed TF involved in after 24â h recovery condition of both CSV and CTV genotypes with annotation. (XLS 66 kb)
DOI: 10.6084/m9.figshare.9631058.v1
title: Additional file 26: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S20. List of primers used for qRT-PCR study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9631046
title: Additional file 22: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S16. Distribution of differentially expressed transcription factors genes in 48â h late response phase and 24â h recovery condition in CSV and CTV genotypes. (XLS 35 kb)
DOI: 10.6084/m9.figshare.9631049
title: Additional file 23: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S17. Differentially expressed TF involved at 48â h late response phase and 24â h recovery conditions of both CSV and CTV genotypes. (XLS 32 kb)
DOI: 10.6084/m9.figshare.9631052
title: Additional file 24: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S18. Differentially expressed TF involved at 48â h late response phase of both CSV and CTV genotypes with annotation. (XLS 88 kb)
DOI: 10.6084/m9.figshare.9631043
title: Additional file 21: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S15. KEGG Pathway analysis of DEGs at 48â h late response phase and after 24â h recovery of CSV and their comparison with CTV genotype. (XLS 489 kb)
DOI: 10.6084/m9.figshare.9631052.v1
title: Additional file 24: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S18. Differentially expressed TF involved at 48â h late response phase of both CSV and CTV genotypes with annotation. (XLS 88 kb)
DOI: 10.6084/m9.figshare.9631043.v1
title: Additional file 21: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S15. KEGG Pathway analysis of DEGs at 48â h late response phase and after 24â h recovery of CSV and their comparison with CTV genotype. (XLS 489 kb)
DOI: 10.6084/m9.figshare.9631049.v1
title: Additional file 23: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S17. Differentially expressed TF involved at 48â h late response phase and 24â h recovery conditions of both CSV and CTV genotypes. (XLS 32 kb)
DOI: 10.6084/m9.figshare.9631046.v1
title: Additional file 22: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S16. Distribution of differentially expressed transcription factors genes in 48â h late response phase and 24â h recovery condition in CSV and CTV genotypes. (XLS 35 kb)
DOI: 10.6084/m9.figshare.9631037
title: Additional file 20: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S14. KEGG Pathway analysis of DEGs at 48â h late response phase and after 24â h recovery of CTV and their comparison with CSV genotype. (XLS 528 kb)
DOI: 10.6084/m9.figshare.9631037.v1
title: Additional file 20: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S14. KEGG Pathway analysis of DEGs at 48â h late response phase and after 24â h recovery of CTV and their comparison with CSV genotype. (XLS 528 kb)
DOI: 10.6084/m9.figshare.9631010
title: Additional file 2: of Multi-host disease management: the why and the how to include wildlife

description: The decision-making framework. The decision-making framework is designed for the selection of management actions to achieve the general and unit-specific management goals. This framework is a spreadsheet consisting of five sheets. The first sheet is a general presentation which presents how the framework operates and invites the user to select the appropriate transmission pathways for the chosen diseases. To cover all the transmission scenarios, three sheets are then proposed: the “direct transmission” worksheet presents only management actions relevant for direct transmission; the “indirect transmission” worksheet present management actions for both direct and indirect transmission; and the “vector-borne transmission” worksheet presents management actions for vector-borne, indirect and direct transmission. For each relevant unit (humans, captive animals, environment and wildlife), each listed management action should be weighed against the following factors: feasibility, cost and efficiency for the pre-established management goal (eradication of the disease, control of the disease, prevention of the disease or laissez-faire). Following this process should leave the manager with a list of one or more management actions for each unit, which match the 3 criteria and should be considered for implementation. (XLS 148 kb)
DOI: 10.6084/m9.figshare.9631010.v1
title: Additional file 2: of Multi-host disease management: the why and the how to include wildlife

description: The decision-making framework. The decision-making framework is designed for the selection of management actions to achieve the general and unit-specific management goals. This framework is a spreadsheet consisting of five sheets. The first sheet is a general presentation which presents how the framework operates and invites the user to select the appropriate transmission pathways for the chosen diseases. To cover all the transmission scenarios, three sheets are then proposed: the “direct transmission” worksheet presents only management actions relevant for direct transmission; the “indirect transmission” worksheet present management actions for both direct and indirect transmission; and the “vector-borne transmission” worksheet presents management actions for vector-borne, indirect and direct transmission. For each relevant unit (humans, captive animals, environment and wildlife), each listed management action should be weighed against the following factors: feasibility, cost and efficiency for the pre-established management goal (eradication of the disease, control of the disease, prevention of the disease or laissez-faire). Following this process should leave the manager with a list of one or more management actions for each unit, which match the 3 criteria and should be considered for implementation. (XLS 148 kb)
DOI: 10.6084/m9.figshare.9630983
title: Additional file 12: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S6. Top DEGs detected at different response phases of chilling stress in both the constrasting parents. (XLS 834 kb)
DOI: 10.6084/m9.figshare.9630974
title: Additional file 11: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S5. Differentially expressed genes (DEGs) of T1, T2, T3, T4 and T5 cold tolerant cultivar (CTV) against control sample (T0). (XLS 3788 kb)
DOI: 10.6084/m9.figshare.9630983.v1
title: Additional file 12: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S6. Top DEGs detected at different response phases of chilling stress in both the constrasting parents. (XLS 834 kb)
DOI: 10.6084/m9.figshare.9630968
title: Additional file 10: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S4. Differentially expressed genes (DEGs) of S1, S2, S3, S4 and S5 cold susceptible cultivar (CSV) against control sample (S0). (XLS 4297 kb)
DOI: 10.6084/m9.figshare.9630974.v1
title: Additional file 11: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S5. Differentially expressed genes (DEGs) of T1, T2, T3, T4 and T5 cold tolerant cultivar (CTV) against control sample (T0). (XLS 3788 kb)
DOI: 10.6084/m9.figshare.9630968.v1
title: Additional file 10: of Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

description: Table S4. Differentially expressed genes (DEGs) of S1, S2, S3, S4 and S5 cold susceptible cultivar (CSV) against control sample (S0). (XLS 4297 kb)
DOI: 10.6084/m9.figshare.9630950
title: Additional file 7: of Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa

description: Table S7. The miRNA synteny analysis of B. napus, B. rapa and F1. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.9630950.v1
title: Additional file 7: of Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa

description: Table S7. The miRNA synteny analysis of B. napus, B. rapa and F1. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.9630938
title: Additional file 5: of Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa

description: Table S5. The identified novel miRNAs in B. napus, B. rapa and F1. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9630944
title: Additional file 6: of Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa

description: Table S6. The differentially expressed miRNAs between B. napus, B. rapa and F1. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9630944.v1
title: Additional file 6: of Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa

description: Table S6. The differentially expressed miRNAs between B. napus, B. rapa and F1. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9630932
title: Additional file 4: of Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa

description: Table S4. The expression level of the conserved miRNAs in B. napus, B. rapa and F1. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.9630938.v1
title: Additional file 5: of Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa

description: Table S5. The identified novel miRNAs in B. napus, B. rapa and F1. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9630932.v1
title: Additional file 4: of Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa

description: Table S4. The expression level of the conserved miRNAs in B. napus, B. rapa and F1. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.9630923
title: Additional file 3: of Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa

description: Table S3. The identified miRNA families in B. napus, B. rapa and F1. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.9630920
title: Additional file 2: of Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa

description: Table S2. The identified conserved miRNAs in B. napus, B. rapa and F1. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.9630923.v1
title: Additional file 3: of Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa

description: Table S3. The identified miRNA families in B. napus, B. rapa and F1. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.9630920.v1
title: Additional file 2: of Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa

description: Table S2. The identified conserved miRNAs in B. napus, B. rapa and F1. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.9630881
title: Additional file 1: of Development of a bedside tool to predict the probability of drug-resistant pathogens among hospitalized adult patients with gram-negative infections

description: contains the Clinical Bedside Tool. (XLSM 162 kb)
DOI: 10.6084/m9.figshare.9630881.v1
title: Additional file 1: of Development of a bedside tool to predict the probability of drug-resistant pathogens among hospitalized adult patients with gram-negative infections

description: contains the Clinical Bedside Tool. (XLSM 162 kb)
DOI: 10.6084/m9.figshare.9630857
title: Geochemistry and fore-arc evolution of upper mantle peridotites in the Cryogenian Bir Umq ophiolite, Arabian Shield, Saudi Arabia

description: The Bir Umq ophiolite is one of the most important ophiolitic successions in the Arabian Shield, and represents an excellent case for the study of the tectonomagmatic evolution of the earliest Precambrian events in the juvenile part of the Arabian-Nubian Shield (ANS). It is a dismembered ophiolite, which includes a serpentinized peridotite with small amounts of gabbro and mélange, and is overlain by the Sumayir formation. The mantle section of the Bir Umq ophiolite has been pervasively sheared and folded during its emplacement and is extensively serpentinized, carbonated and silicified, resulting in the common development of magnesite and listwaenite along the shear zones. Listwaenite occurs in the form of upstanding ridges due to its resistance to erosion. Antigorite is the main serpentine mineral, which, however, has low amounts of lizardite and chrysotile, indicating that the present serpentinites formed by prograde metamorphism. The ophiolitic rocks of Bir Umq have undergone regional metamorphism up to the greenschist to amphibolite facies. The presence of mesh and bastite textures indicates harzburgite and dunite protoliths. The serpentinized peridotite preserves rare relicts of primary minerals such as olivine, pyroxene and Cr-spinel. The serpentinized ultramafics of Bir Umq have high Mg# [molar Mg/(Mg+Fe<sup>2+</sup>); 0.90–0.93), low CaO, and Al<sub>2</sub>O<sub>3</sub> contents similar to that of the environment of the suprasubduction zone. Additionally, they are characterized by the depletion of some compatible trace elements (e.g., Nb, Sr, Ta, Zr, Hf and REE), but show a wide variation in the Rb and Ba. Moreover, they are enriched in some elements that have affinities for Mg-rich minerals such as Ni, Cr, V, and Co. Fresh relics of olivine have high Fo (av. 0.91) and NiO (av. 0.42) contents, similar to those in the mantle olivine. The fresh Cr-spinel has high Cr# (0.68) and low TiO<sub>2</sub> content (av. 0.11), similar to those in modern fore-arc peridotites. The composition of both orth- and clinopyroxenes confirms the fore-arc affinity of the studied ultramafics. The present study indicates that the protoliths of the serpentinized ultramafics of Bir Umq have high partial melt degrees, which is consistent with the characteristics of ultramafic rocks formed in a subarc environment (fore-arc) within a suprasubduction zone system.
DOI: 10.6084/m9.figshare.9630857.v1
title: Geochemistry and fore-arc evolution of upper mantle peridotites in the Cryogenian Bir Umq ophiolite, Arabian Shield, Saudi Arabia

description: The Bir Umq ophiolite is one of the most important ophiolitic successions in the Arabian Shield, and represents an excellent case for the study of the tectonomagmatic evolution of the earliest Precambrian events in the juvenile part of the Arabian-Nubian Shield (ANS). It is a dismembered ophiolite, which includes a serpentinized peridotite with small amounts of gabbro and mélange, and is overlain by the Sumayir formation. The mantle section of the Bir Umq ophiolite has been pervasively sheared and folded during its emplacement and is extensively serpentinized, carbonated and silicified, resulting in the common development of magnesite and listwaenite along the shear zones. Listwaenite occurs in the form of upstanding ridges due to its resistance to erosion. Antigorite is the main serpentine mineral, which, however, has low amounts of lizardite and chrysotile, indicating that the present serpentinites formed by prograde metamorphism. The ophiolitic rocks of Bir Umq have undergone regional metamorphism up to the greenschist to amphibolite facies. The presence of mesh and bastite textures indicates harzburgite and dunite protoliths. The serpentinized peridotite preserves rare relicts of primary minerals such as olivine, pyroxene and Cr-spinel. The serpentinized ultramafics of Bir Umq have high Mg# [molar Mg/(Mg+Fe<sup>2+</sup>); 0.90–0.93), low CaO, and Al<sub>2</sub>O<sub>3</sub> contents similar to that of the environment of the suprasubduction zone. Additionally, they are characterized by the depletion of some compatible trace elements (e.g., Nb, Sr, Ta, Zr, Hf and REE), but show a wide variation in the Rb and Ba. Moreover, they are enriched in some elements that have affinities for Mg-rich minerals such as Ni, Cr, V, and Co. Fresh relics of olivine have high Fo (av. 0.91) and NiO (av. 0.42) contents, similar to those in the mantle olivine. The fresh Cr-spinel has high Cr# (0.68) and low TiO<sub>2</sub> content (av. 0.11), similar to those in modern fore-arc peridotites. The composition of both orth- and clinopyroxenes confirms the fore-arc affinity of the studied ultramafics. The present study indicates that the protoliths of the serpentinized ultramafics of Bir Umq have high partial melt degrees, which is consistent with the characteristics of ultramafic rocks formed in a subarc environment (fore-arc) within a suprasubduction zone system.