cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/y6zyrnxbfm.2
title: Dataset of Stagnant Water and Wet Surface with Annotations

description: Stagnant Water detection is a very challenging task due to mudding or reflection of surrounding . Therefore, to increase the accuracy of stagnant water detection by avoiding misclassification; additional images of wet surface are added. With this objective, we have created a dataset of 2000 images with annotations. Out of 2000 ,25 images are rotated by 90 degrees. The dataset consists of 2000 (256 × 256 pixels) RGB labeled images for two classes, namely water and wet surface. The images were taken from top view and side view with varying day-light conditions. The images are captured using rear camera of mobile phone. The images are annotated in the YOLO (You Only Look Once) format.
DOI: 10.17632/tbxj2n99hv.2
title: Dataset for "Tracing the evolutionary history of Ca2+-signaling modulation by human Bcl-2: insights from the Capsaspora owczarzaki IP3 receptor ortholog"

description: This dataset is associated with the research article "Tracing the evolutionary history of Ca2+-signaling modulation by human Bcl-2: insights from the Capsaspora owczarzaki IP3 receptor ortholog", currently under revision in "Biochimica et Biophysica Acta - Molecular Cell Research". Abstract: Recently, a functional IP3R ortholog (CO.IP3R-A) capable of IP3-induced Ca2+ release has been discovered in Capsaspora owczarzaki, a close unicellular relative to Metazoa. In contrast to mammalian IP3Rs, CO.IP3R-A is not modulated by Ca2+, ATP or PKA. Protein-sequence analysis revealed that CO.IP3R-A contained a putative binding site for anti-apoptotic Bcl-2, although Bcl-2 was not detected in Capsaspora owczarzaki and only appeared in Metazoa. Here, we examined whether human Bcl-2 could form a complex with CO.IP3R-A channels and modulate their Ca2+-flux properties using ectopic expression approaches in a HEK293 cell model in which all three IP3R isoforms were knocked out. We demonstrate that human Bcl-2 via its BH4 domain could functionally interact with CO.IP3R-A, thereby suppressing Ca2+ flux through CO.IP3R-A channels. The BH4 domain of Bcl-2 was sufficient for interaction with CO.IP3R-A channels. Moreover, mutating the Lys17 of Bcl-2’s BH4 domain, the residue critical for Bcl-2-dependent modulation of mammalian IP3Rs, abrogated Bcl-2’s ability to bind and inhibit CO.IP3R-A channels. Hence, this raises the possibility that a unicellular ancestor of animals already had an IP3R that harbored a Bcl-2-binding site. Bcl-2 proteins may have evolved as controllers of IP3R function by exploiting this pre-existing site, thereby counteracting Ca2+-dependent apoptosis.
DOI: 10.17632/3zb5nmb847.1
title: Experimental vignette for: “Servitization as a strategy for remanufacturing: an experimental study” published by BAR - Brazilian Administration Review

description: This data includes vignette, experimental check questions, general questions, and ANOVA results for manipulation checks.
DOI: 10.17632/bb4vfjnfkf.1
title: Functional diagnostics using fresh uncultured lung tumor cells to guide personalized treatments

description: A DNeasy Blood & Tissue kit (Qiagen) was used to extract genomic DNA from healthy lung and tumor tissue samples and from CR cultures (Table 1). Genomic dsDNA (382-500 ng) was fragmented with a Covaris E220 evolution instrument (Covaris) to a mean fragment size of 200 base pairs (bp). For sample library preparation and enrichment, a KAPA Hyper library preparation kit was used, following the SeqCap EZ HyperCap Workflow User’s Guide Version 1.0 (Roche Nimblegen). In brief, pre-capture amplification was performed using 9 cycles, and captures were performed in multiplexes of 3 to 4 samples using 0.667-1 μg of each library. To identify somatic mutations, targeted next-generation sequencing was performed using the Illumina HiSeq2500 system in HiSeq high output mode using v4 chemistry or HiSeq Rapid run mode using v2 chemistry (Illumina), with the NimbleGen Cancer Panel to capture the exons of 578 cancer-related genes. NimbleGen probes used were 120522_HG19_Onco_R_EZ. Instead of SeqCap HE-Oligos, we used xGen Universal Blocking oligo TS mix (IDT). For post-capture amplification, ten cycles were used in two replicate reactions. The library was quantified for sequencing using the 2100 Bioanalyzer High sensitivity kit. Read length for the paired-end run was 2x101 bp. Pre-processing of short read data was done using the Trimmomatic software and included correction of the sequence data for adapter sequences, bases with low quality, and reads less than 36 bp in length. The BWA-MEM algorithm was then used to map paired-end reads passing the pre-processing onto the human reference genome build 38 (EnsEMBL v82). Finally, variants were called according to the GATK best practice for somatic short variants (version 3.5.1), supplemented with cross-sample contamination and sequencing artifact filtering. In the process, tumor samples (tissue and CR culture) were paired with their patient-matched normal samples and variant calls were filtered against a panel of normals generated from the exome data of 24 healthy unrelated Finnish individuals sequenced in-house earlier. Annotation for single nucleotide variants and short indels was performed using the Annovar tool against the RefGene database. In brief, variants called from samples were filtered for false-positives by removing variants not passing all GATK filters, residing in intronic and intergenic regions, and causing a synonymous or non-frameshift change as well as variant with a minor allele frequency ≥ 1% in the EPS, 1KG, general ExAC (ExAC), East Asian ExAC (ExAC_EAS), non-Finnish European ExAC (ExAC_NFE), Finnish ExAC (ExAC_FIN) databases, strand odd ratio for single nucleotide variants ≥ 3.00, and strand odd ratio for indels ≥ 11.00, coverage ≤ 10, and variant quality value ≤ 40. Finally, variants were removed if the variant allele frequency between the tumor and normal was &lt; 2%.
DOI: 10.17632/zpz3ggg873.1
title: Patrao and Karnik

description: This data is used for research by Patrao, G. and Karnik, A.
DOI: 10.17632/vmyn94prrr.1
title: Temporal spillover of private energy retrofitting: Distribution of home energy retrofits and implications for its subsidy policies

description: Dataset and analysis for the above-mentioned article, titled "Temporal spillover of private energy retrofitting: Distribution of home energy retrofits and implications for its subsidy policies".
DOI: 10.17632/xcj2827tth.1
title: Właściwości tribologiczne komponentów ślizgowych implantów wytwarzanych meto druku 3D (FDM i DLP)

description: Wyniki badań w formie plakatu przedstawione na konferencji IMPLANTY 2021
DOI: 10.17632/48p667vkm9.1
title: QRI

description: The Questionnaire of Religious Insights (QRI) presented in this paper was constructed in order to challenge the current model of religious orientations, especially the Quest Scale, by providing insight into different kinds of motivation that can influence religious seeking. The QRI contains two scales: Doubt (D) and Quest (Q). The latter consists of three subscales: searching for the solution of dilemmas (Qsd), searching as the expansion of self (QI), and searching for novelty (Qn). Validation of the internal reliability of the QRI and external criteria analysis was examined within two exploratory studies, both conducted on a group of 120 Polish students. The results of the first study provided evidence for the internal reliability of QRI, as well as it’s criterion validity with use of Religious Orientation Scales. The results of the second study in turn suggested that most of the external validity criteria have been met. In conclusion, the proposed model of exploring motivation factors that may influence religious questing is a topic worth pursuing. we propose studies that can follow this exploratory study, that can be undertaken on larger and demographically more diverse samples.
DOI: 10.17632/r55pbs5s8p.2
title: Data on European kitchen layouts belonging to vulnerable consumers (elderly people and young families with children or pregnant women) and risk-takers (young single men)

description: The data contains kitchen layouts belonging to vulnerable consumers (elderly people and young families with children or pregnant women) and risk-takers (young single men).
DOI: 10.17632/tvw5k48b6p.1
title: Associated Dataset to "Rapid tuning of postural reflexes by visual feedback underlies gaze stabilization in walking Drosophila"

description: Associated Dataset to the manuscript "Rapid tuning of postural reflexes by visual feedback underlies gaze stabilization in walking Drosophila"
DOI: 10.34810/data72/796
title: 02CO_1.MR.0004.0202.2013.03.10.17.33.16.406250.165480213.IMA
DOI: 10.17632/wpfycmb5sv.1
title: Agent-based models predict emergent behavior of heterogeneous cell populations in dynamic microenvironments: PARAMETER SENSITIVITY

description: Data and results for `PARAMETER SENSITIVITY` simulations. Simulations of three parameters (crowding tolerance, metabolic preference, migratory threshold) varied +/- 10, 20, 30, 40, 50, 60, 70, 80, 90, and 100% from baseline values. Each condition is run for 15 days (21600 ticks) with 20 replicates (random seeds 0 - 19). Cells are introduced to the center of the constant source environment after a 1 day delay. Snapshots are taken every 0.5 days (720 ticks). The data folder contains .tar.xz compressed replicate sets. The results folder contains .pkl files of data parsed into arrays. Simulations are labeled as: [parameter]_[percent] - [parameter] - max_height = crowding tolerance parameter - meta_pref = metabolic preference parameter - migra_threshold = migratory threshold parameter - [percent] - ### = percent change in parameter from baseline denoted (### - 100)%
DOI: 10.17632/xs6xxjvmd2.1
title: Inventario de humedales para protección costera en Costa Rica.

description: Primera versión de un inventario de humedales que ofrecen protección costera en Costa Rica. Producto generado a través del proyecto C1153 "IDENTIFICACIÓN DE ZONAS POTENCIALES PARA EL ESTUDIO DE PROTECCIÓN COSTERA CON SOLUCIONES BASADAS EN ECOSISTEMAS", financiado con fondos ordinarios de la Vicerrectoría de Investigación de la Universidad de Costa Rica. Es una capa geográfica en formato "shapefile" con sistema de referencia CRTM05 (EPSG: 5367). El producto pretende ser una guía en la localización de sitios de estudio en futuros proyectos. Es un producto preliminar en proceso de mejora. La información ofrecida debe utilizarse bajo responsabilidad del usuario. No se asume responsabilidad por el uso que pueda darse a estos datos. Más información en el archivo Descripcion General.txt Details of the dataset in english language can be found in the file General description.txt
DOI: 10.17632/7w2cdsrt87.1
title: Agent-based models predict emergent behavior of heterogeneous cell populations in dynamic microenvironments: MODULE COMPLEXITY

description: Data and results for `MODULE COMPLEXITY` simulations. Simulations of population with different combinations of metabolism and signaling module complexities (random, simple, medium, and complex). Each condition is run for 15 days (21600 ticks) with 20 replicates (random seeds 0 - 19). Cells are introduced to the center of the constant source environment after a 1 day delay. Snapshots are taken every 0.5 days (720 ticks). The data folder contains .tar.xz compressed replicate sets. The results folder contains .pkl files of data parsed into arrays (only for the full model rule simulations). Simulations are labeled as: [case]_[metabolism]_[signaling] - [case] - simulations full model rules do not have this label - both = fixed state with both modules - metabolism = fixed state with only metabolism module - signaling = fixed state with only signaling module - [metabolism] - R = random metabolism module - S = simple metabolism module - M = medium metabolism module - C = complex metabolism module - [signaling] - R = random signaling module - S = simple signaling module - M = medium signaling module - C = complex signaling module
DOI: 10.17632/wzs7pxkgb9.1
title: Agent-based models predict emergent behavior of heterogeneous cell populations in dynamic microenvironments: DEFAULT

description: Data and results for `DEFAULT` simulations. Simulations of default conditions. For colony, only cancerous cells are simulated for 15 days (21600 ticks) with 51 replicates (random seeds 0 - 50). Cells are introduced to the center of the constant source environment after a 1 day delay. For tissue, only healthy cells are simulated for 15 days (21600 ticks) with 51 replicates (random seeds 0 - 50). Cells are introduced to every location of the constant source environment at the start of the simulation. For the random simulations, cell agents use a random state rule set simulated for 15 days (21600 ticks) with 50 replicates (random seeds 0 - 49). Snapshots are taken every 0.5 days (720 ticks). The data folder contains .tar.xz compressed replicate sets. The results folder contains .pkl files of data parsed into arrays. Simulations are labeled as: [case]_[initialization] - [case] - C = cancer cells only - H = healthy cells only - random = randomized state rules - [initialization] - only randomized state rules have this label - R1 = initialized to radius 1 - R5 = initialized to radius 5
DOI: 10.17632/sbyj5f6c3k.1
title: EEG data: anxiety patients & control group

description: The final sample included 47 participants: 24 anxiety patients and 23 volunteers without any neurological or psychiatric diagnoses as control group. Demographic information and clinical features are presented in Table 1. The selection criteria for the patient group were the following: right-handedness, age from 18 to 45 years, the presence of a leading anxiety and additional depressive syndrome, F41.0 (mixed anxiety and depressive disorder) or F41.2 (panic disorder) diagnosis according to ICD-10, and the duration of the disorder from six months to 5 years. Data collecting EEG data was acquired for each participant during the active tasks and the baseline. EEG was recorded using a 19-channel Electroencephalograph-analyzer EEGA-21/26 “Encephalan-131-03”. Data was sampled at 256 Hz with filter settings of 0.5 to 60 Hz in DC acquisition mode with impedances kept below 10 kΩ. Electrodes were positioned using the 10-20 international system. We also used four electrodes to record the electrooculogram (horizontal and vertical), electrocardiogram and electromyogram. All electrodes were referenced to A1 and A2 located on the left and right mastoids, respectively. 2.6. Data processing and analysis Processing (including filtering, artifact minimization, epoch division, fast Fourier transform, spectral analysis, data export) was performed using the embedded commercial software “Encephalan-EEGA-pro” (Medicom-MTD) and LORETA software. EEG records for each subject were divided into five groups according to stimuli – baseline, observation, imagination, execution, execution+observation together. The registered fragments were cleared of artifacts, then were processed with Fast Fourier Transform in 3 frequency bands: alpha1 (8-10.5 Hz), alpha2 (10.5-13 Hz), beta1 (13-24 Hz).
DOI: 10.17632/5hvrfvfb4k.1
title: Supplemental materials-A simple and sensitive aptasensor with rolling circle amplification for viable Cronobacter sakazakii detection in powdered infant formula

description: This is the supplemental materials for manuscript "A simple and sensitive aptasensor with rolling circle amplification for viable Cronobacter sakazakii detection in powdered infant formula".
DOI: 10.17632/p733v4y76c.1
title: The E3 ubiquitin ligase RNF10 modifies 40S ribosomal subunits of ribosomes compromised in translation

description: Reversible monoubiquitination of small subunit ribosomal proteins RPS2 and RPS3 has been noted to occur on ribosomes involved in ZNF598-dependent mRNA surveillance. Subsequent deubiquitination of RPS2 and RPS3 by USP10 is critical for recycling of stalled ribosomes in a process known as ribosome-associated quality control (RQC). Here, we identified and characterized the RPS2- and RPS3-specific E3 ligase RING finger protein 10 (RNF10) and its role in translation. Overexpression of RNF10 increased 40S ribosomal subunit degradation similar in extent to the knockout of USP10. Although a substantial fraction of RNF10-mediated RPS2 and RPS3 monoubiquitination resulted from ZNF598-dependent sensing of collided ribosomes, ZNF598-independent impairment of translation initiation and elongation also contributed to RPS2 and RPS3 monoubiquitination. PAR-CLIP-based identification of crosslinked mRNA and tRNAs suggests recruitment of RNF10 to fully assembled, though functionally impaired or stalled ribosomes. These impeded ribosomes are tagged by ubiquitin at their 40S subunit for subsequent programmed degradation unless rescued by USP10.
DOI: 10.17632/6whw3gn5z6.1
title: Feeling Well Surrounded

description: Datasets three studies ''Feeling Well Surrounded. How Body Shape Mobility Shapes Self-Control''
DOI: 10.17632/jdbjkmgxfr.1
title: Homewood Adnexal Torsion after Hysterectomy

description: The purpose of this data is to identify preoperative and intraoperative risk factors for adnexal torsion after hysterectomy, and to estimate the incidence of the disease in the modern-day era of laparoscopic surgery.
DOI: 10.17632/7w3fwx7y2y.2
title: IMAGINE trial data

description: Data from IMAGINE feasibility randomised controlled trial. 56 adolescents who were randomised to imagery-based cognitive therapy or nondirective supportive therapy. Main outcomes are feasibility, acceptability and and safety data. Secondary outcomes are clinical data including measures of depression, anxiety and memory specificity. Please see protocol paper for full methodology and list of measures.
DOI: 10.17632/xtbykrbzwb.1
title: Effects of propolis administration on induced oxidative stress: A systematic review

description: Supplemental material for the systematic review "Effects of propolis administration on induced oxidative stress: A systematic review"
DOI: 10.17632/9tctbp4pg8.1
title: Lead-tin laminated all-perovskite solar cell

description: Lead-tin laminated all-perovskite solar cell Publisher: Haoliangsheng
DOI: 10.17632/yt6xksh74j.1
title: Net longshore sediment transport at jetties along the Gulf of Thailand

description: This research focused on net alongshore sediment transport at 3 major jetties in Thailand, being Cha Am jetty, Krai jetty, and Na Saton jetty. The survey was conducted in August 2019, September 2019, August 2020, and September 2020. The field investigations measured coastal elevation by Real Time Kinematic (RTK) technique. The coastal level along 2-km shoreline south from each jetty was surveyed with each beach profile being spaced 25 m apart. In order to cover the sub-aerial and intertidal zones, the uppermost point of each beach profile was set at a beach dune, while the lowermost point was set at an elevation of -0.5 m from national mean sea level.
DOI: 10.17632/gjr8xsxdtz.1
title: Passive acoustic monitoring at two temporal resolutions of sampling

description: This dataset contains the species that have been detected by manually listening to a subsample of audio data collected through Passive Acoustic Monitoring in the Santarém region of Brazil. Audio data was collected with Frontier Labs audio recorders, mounted in trees within 10m of pre-existing permanent transects. Full details are available in the Methods sections of accompanying preprint/article. The audio data has been subsampled at two temporal sampling resolutions (Method column). This dataset contains the species that have been detected by manually listening to a subsample of audio data collected through Passive Acoustic Monitoring in the Santarém region of Brazil. The audio data has been subsampled at two temporal sampling resolutions per site (Method column), 240 samples of 15 second duration (High temporal resolution or HTR) and 4 samples of 15 minute duration (Low temporal resolution or LTR). The 'Transect column' is the list of sampling locations or 'sites', and the species column is the list of species detected in each sample using the taxonomy of the Brazilian Ornithology Records Committee (de Piacentinie et al., 2015). The data is in long format. Date and time refer to the start date and time of the sampled period, and alongside Method and Transect form a unique identifier for each sample. de Piacentini, V.Q., Aleixo, A., Eduardo Agne, C., Nachtigall Maurício, G., Fernando Pacheco, J., Bravo, G.A., R Brito, G.R., Naka, L.N., Olmos, F., Posso, S., Fábio Silveira, L., Betini, G.S., Carrano, E., Franz, I., Lees, A.C., Lima, L.M., Pioli, D., Schunck, F., Raposo do Amaral, F., Bencke, G.A., Cohn-Haft, M., Fernando Figueiredo, L.A., Straube, F.C., Cesari, E., 2015. Annotated checklist of the birds of Brazil by the Brazilian Ornithological Records Committee / Lista comentada das aves do Brasil pelo Comitê Brasileiro de Registros Ornitológicos, Revista Brasileira de Ornitologia.
DOI: 10.17632/wt99brrp7f.1
title: Automated CX Detection through Social Networks - Scripts & Dataset

description: This dataset is comprised of the following: a. Data Extraction scripts (DataExtraction directory): Scripts to extract data from Twitter, Foursquare and Facebook using the respective platforms APIs. You must use Python 3.x to run the script called CX_EXTRACTOR.py to extract data for any of the three platforms. You must also provide your own API KEYS for each platform. b. Classified messages from Twitter and Facebook into one of our detected CX dimensions: Product Experience, Customer Service, Digital Experience, In-Store Customer Experience and Events Experience (Data directory). Each dataset is in a csv format and contains the following columns: unique identifier, our classifier predicted class, authored date, establishment brand, message text, sentiment score. c. Trained models binaries & scripts to test the models using a toy dataset (Classification directory). You must use Python 3.x to run the script called model_testing.py. You can input your own test data inside the test.csv. After executing the script, results will be written into prediction.csv file. Programming Language: Python 3.x
DOI: 10.17632/zpzj7b7mvx.1
title: Hyperlocal Business Research Data (1999-2020)

description: The Hyperlocal Business research and publication dataset, which was indexed by Scopus from 1999 to 2020. The dataset contains data authors, authors ID Scopus, title, year, source title, volume, issue, article number in Scopus, DOI, link, affiliation, abstract, index keywords, references, Correspondence Address, editors, publisher, conference name, conference date, conference code, ISSN, language, document type, access type, and EID.
DOI: 10.17632/7gjt4d8b4k.1
title: pix2pixHD-HE

description: The phase-contrast and tdTomato fluorescent microscopic images of Myxococcus xanthus. The training and test sets for the paper: Zhang, J., Comstock, J. A., Cotter, C. R., Murphy, P. A., Nie, W., Welch, R. D., Igoshin, O.A. (2021). Quantification ofMyxococcus xanthus Aggregation and Rippling Behaviors: Deep-learning Transformation of Phase-contrast into Fluorescence Microscopy Images. BioRxiv, 2021.07.16.452736 To save the storage space, all datasets are images selected with a 10-min time interval. 5*10^9 cells/mL: training set: rd0,rd1,rd2,rd3,rd4,rd5,rd6 test set: rdt0 cv set: rdcv0 2.5*10^9 cells/mL: training set: ld0,ld1,ld2 test set: ldt0 1*10^10 cells/mL: test set: hdt0,hdt1 rippling: training set: r0, r1 test set: rt0