cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3634661_d11.v1
title: Additional file 6: Table S5. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: lncRNA transcripts and loci identified in HSC myofibroblasts, HSC myofibroblasts during serum starvation, and HSC myofibroblasts after TGF-Î˛ stimulation. (XLS 3456 kb)
DOI: 10.6084/m9.figshare.c.3634661_d13.v1
title: Additional file 7: Table S6. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: Expression levels of all lncRNA loci in each condition of HSC. (XLS 408 kb)
DOI: 10.6084/m9.figshare.c.3634661_d14.v1
title: Additional file 10: Table S9. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: lncRNAsâ   association with SMAD3, super-enhancers, and restricted expression in HSCs. (XLS 312 kb)
DOI: 10.6084/m9.figshare.c.3634661_d15.v1
title: Additional file 4: Table S3. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: lncRNA transcripts and loci found in HSC myofibroblasts. (XLS 1520 kb)
DOI: 10.6084/m9.figshare.c.3634661_d16.v1
title: Additional file 12: Table S11. of Long noncoding RNAs expressed in human hepatic stellate cells form networks with extracellular matrix proteins

description: Expression levels of lncRNAs and their divergent paired coding genes in HSC myofibroblasts. (XLS 310 kb)
DOI: 10.17863/cam.21743
title: Research data supporting the publication of "Archaeological field-survey in the environs of Aldborough (Isurium Brigantum)"

description: Extended discussion of the Roman finds (principally the pottery and Ceramic Building Materials) recovered from the field walking survey in the vicinity of Aldborough (North Yorks), together with full data on individual findspots and identifications of individual finds.
DOI: 10.17863/cam.33680
title: Data pertaining to the PhD thesis entitled "Blockchain, parameterisation and automated arbitrage applied to the chemical industry".

description: Data pertaining to the PhD thesis entitled "Blockchain, parameterisation and automated arbitrage applied to the chemical industry". Blockchain-enabled M2M electricity market.zip - this package contains files and instructions needed to reproduce work investigating how blockchain technology might be coupled to cyber-physical systems to leverage new opportunities in the context of eco-industrial parks by enabling automated trading of resources. The investigation is performed in the context of using blockchain to facilitate M2M interactions and establish a M2M electricity market in the chemical industry. The presented scenario includes two electricity producers and one electricity consumer trading with each other over a blockchain. All participants are supplied with realistic data produced by process flow sheet models. This work contributes a proof-of-concept implementation of the scenario. Surrogate models of a biodiesel plant.zip – this package contains files and instructions needed to reproduce work investigating the extent to which surrogate models can be used to paramaterise typical input-output relations in a process flow sheet model. Automated arbitrage spotter.zip - this package contains files and instructions needed to reproduce work investigating how the cyber-physical system can be applied to find and exploit opportunities for financial arbitration over chemical commodities on futures markets. It presents the implementation of an automated arbitrage spotter powered by market and physical data applied to two scenarios: conversion of natural gas to methanol and crude palm oil to biodiesel.
DOI: 10.17863/cam.101941
title: Research data supporting 'Instantons and the quantum bound on chaos'

description: 1. This dataset contains the data obtained exact quantum simulations of an 'Out-of-time-ordered correlator (OTOC)' and its classical and RPMD approximation, for a model two-dimensional chaotic potential. It also contains the data supporting the claim that instanton enforces the quantum bound on chaos. We refer the reader to https://arxiv.org/abs/2212.10202 for more details on this work. 2. The code for the same was written in python and FORTRAN (available on request). The data is stored figure-wise (figure order as in https://arxiv.org/abs/2212.10202) in this dataset. 3. Under 'FIG2a', we provide the data for classical, RPMD and (Kubo-regularised) quantum OTOCs at three different temperatures measured in units of 'Tc', the instanton crossover temperature. The respective file names contains the details of the temperature and parameters in the concerned file. 4. Under FIG2b, we provide a text file providing information about the temperature dependence of the RPMD growth rate (or RPMD Lyapunov exponents) of OTOCs. We also provide the corresponding quantum Lyapunov exponent at the respective temperatures. 5. Under FIG3a, we provide the data to reproduce the classical and RPMD Poincare sections (at 0.95Tc and 3Tc). 6. Under FIG3b, we provide the data for the 'microcanonical' RPMD and classical OTOCs at different temperatures (indicated in the file name). 7. Under FIG3d, we provide the data for 'filtering' the RPMD Poincare sections (wrt to radius of gyration histogram in fig 3c). 8. Finally, under SI, we provide the data for quantum OTOCs at temperatures beyond what is described in the main text, i.e down to T=0.
DOI: 10.17863/cam.106778
title: Research data supporting "Information capacity of phase-only computer-generated holograms for holographic displays"

description: The research aims to investigate the information capacity of phase-only computer-generated holograms (CGH) quantized to certain bit depth level. Therefore, research data has been generated from the quantized CGH process for 800 target images sourced from the DIV2K Dataset (https://data.vision.ee.ethz.ch/cvl/DIV2K/). The research data contains target images' entropy and delentropy, computer-generated holograms' bit depth and entropy, and the normalised mean squared error (NMSE) between the reconstruction and target image. There are two files in total, where one contains the results for target images set at far field (Fraunhofer region) and the other contains the results for target images set at near field (Fresnel region). Each row in the csv file is corresponded to the result of one instance of a CGH algorithm run.
DOI: 10.17863/cam.18829
title: Data for "Stochastic sampling of quadrature grids for the evaluation of vibrational expectation values"

description: Data for "Stochastic sampling of quadrature grids for the evaluation of vibrational expectation values"
DOI: 10.6084/m9.figshare.c.3634820_d2.v1
title: Additional file 5: of Expanding the view on the evolution of the nematode dauer signalling pathways: refinement through gene gain and pathway co-option

description: Gene models in fasta format. (TGZ 545 kb)
DOI: 10.6084/m9.figshare.c.3634820_d3.v1
title: Additional file 1: of Expanding the view on the evolution of the nematode dauer signalling pathways: refinement through gene gain and pathway co-option

description: Genome assembly information for the species studied, includes: BioProjectID, assembly N50, CEGMA results, PubMedID of publication. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3634820_d4.v1
title: Additional file 4: of Expanding the view on the evolution of the nematode dauer signalling pathways: refinement through gene gain and pathway co-option

description: Gene models in gff format. (TGZ 240 kb)
DOI: 10.6084/m9.figshare.c.3634820_d5.v1
title: Additional file 6: of Expanding the view on the evolution of the nematode dauer signalling pathways: refinement through gene gain and pathway co-option

description: Newick tree format for Figure 4. (TXT 3 kb)
DOI: 10.6084/m9.figshare.c.3634820_d6.v1
title: Additional file 2: of Expanding the view on the evolution of the nematode dauer signalling pathways: refinement through gene gain and pathway co-option

description: Gene match results for transcriptomes from Haemonchus contortus, Strongyloides ratti and Trichuris suis. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3634826_d1.v1
title: Additional file 8: Table S4. of Identification of stable QTLs for vegetative and reproductive traits in the microvine (Vitis vinifera L.) using the 18 K Infinium chip

description: List of the biological functions most probably related to the mapped QTLs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3634826_d2.v1
title: Additional file 9: Table S5. of Identification of stable QTLs for vegetative and reproductive traits in the microvine (Vitis vinifera L.) using the 18 K Infinium chip

description: Physical localization and expression in different organs of the functional candidate genes potentially involved in the repeated QTLs identified. (XLSX 90 kb)
DOI: 10.17863/cam.24098
title: Dataset supporting publication entitled: 'Estimation of trailer off-tracking using visual odometry'

description: Zip file containing raw data
DOI: 10.6084/m9.figshare.c.3634826_d3.v1
title: Additional file 5: Table S2. of Identification of stable QTLs for vegetative and reproductive traits in the microvine (Vitis vinifera L.) using the 18 K Infinium chip

description: Genome regions not covered by genetic maps (gaps &gt; 5 cM within linkage groups, or &gt; 1.6 Mb at the ends of linkage groups). (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3634826_d7.v1
title: Additional file 3: Table S1. of Identification of stable QTLs for vegetative and reproductive traits in the microvine (Vitis vinifera L.) using the 18 K Infinium chip

description: Correlation (Spearman coefficient) between environments. Suffixes G, F.1, F.2, cool and hot stand for greenhouse, first replicate, second replicate, cool and hot treatments during experiments in growth rooms, respectively. (XLSX 19 kb)
DOI: 10.17863/cam.92063
title: Superalloy database: strength and microstructure

description: Data overview ............. alloy_spreadsheet_v3.1.csv A comma delimited csv file containing the processed superalloy database. The spreadsheet was originally compiled in Google Sheets, with pre-processing carried out using the Google Apps Script. Each row corresponds to a unique alloy, with uniqueness determined by both composition and heat treatments. Each row (alloy) has been assigned a unique tag in the 1st column. Note that constituent alloy phases have their own rows---this is premised on the assumption that the constituent phases are themselves valid equilibrium alloys. alloy_spreadsheet_v3.1_input.csv Similar to alloy_spreadsheet_v3.1.csv, this spreadsheet contains the unprocessed data. alloy_images Contains .png files of alloy microstructure (principally SEM or TEM micrographs). The files are labelled systematically and each name corresponds to a relevant data entry in alloy_spreadsheet_v3.1.csv. Methodological information .......................... The databse has been compiled from a mixture of published scientific articles and commercial or industry datasets. Each data source is cited in the dataset, including a DOI were appropriate. Some data was obtained from plots or figures using the WebPlotDigitizer tool. Data-specific information ......................... Units used in the data are specified in the dataset's header. A dash "-" indicates that a certain element or heat treatment was not used in that particular alloy. An empty entry (cell) indicates that data was missing or simply not collected in the original data source.
DOI: 10.6084/m9.figshare.c.3634826_d8.v1
title: Additional file 11: Table S6. of Identification of stable QTLs for vegetative and reproductive traits in the microvine (Vitis vinifera L.) using the 18 K Infinium chip

description: Summary of the climatic data for the different experiments. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3634826_d9.v1
title: Additional file 7: Table S3. of Identification of stable QTLs for vegetative and reproductive traits in the microvine (Vitis vinifera L.) using the 18 K Infinium chip

description: All significant quantitative trait loci (QTL) detected. (XLSX 20 kb)
DOI: 10.17863/cam.72659
title: Research data supporting "An investigation of the miscibility gap controlling phase formation in refractory metal high entropy superalloys via the Ti-Nb-Zr constituent system"

description: Data corresponding to the figures and tables in the associated paper. Data includes BSE SEM images, SEM EDX elemental distribution maps, TEM HAADF images, TEM diffraction patterns, STEM EDX elemental distribution maps and x-ray diffraction data.
DOI: 10.6084/m9.figshare.28046606
title: METADATA__rAmIT_Cartografia_20241217

description: La metadata describe una base de datos geoespacial que integra información relacionada con las presiones ambientales derivadas de las actividades humanas y el cambio climático, así como variables económicas, uso del suelo, y la presencia de instituciones de educación superior, ONG, centros de investigación, pesquerías y acuicultura. Esta base de datos organiza y cruza dichos datos con las microcuencas que conforman la gran cuenca amazónica, permitiendo un análisis detallado de los factores que influyen en cada microcuenca. Adicionalmente, la base de datos incluye índices calculados a partir de esta información, los cuales facilitan la priorización de microcuencas estratégicas. Estos índices constituyen una herramienta clave para la selección de sitios óptimos donde se podría establecer el Centro de Aguas Amazónicas (CAAm), garantizando que la ubicación responda a criterios ecológicos, económicos y sociales fundamentales para la gestión sostenible de los recursos acuáticos amazónicos.
DOI: 10.6084/m9.figshare.c.3634880_d2.v1
title: Additional file 11: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Genetic loci associated with Aphanomyces resistance, earliness and plant height detected by genome-wide association mapping using the MLMM method. (a) Genetic positions are estimated on the genetic map resulting from the projection of the marker map from Hamon et al. [43] onto the consensus map from Tayeh et al. [49]; (b) A linkage disequilibrium (LD) block is designed with all markers in LD (r 2 &gt; 0.2) with the associated marker. LD blocks are named in consecutive numerical order following their linkage group (LG) name and their genetic position; (c) Aphanomyces resistance and earliness Meta-QTL (quantitative trait loci) described in [43]; (d) Initial QTL for Aphanomyces resistance and earliness before meta-analysis described in [41, 43]; (e) Trait-associated marker(s) and their genetic position(s) in the LD blocks. PsCam- markers are SNPs developed by Tayeh et al. [49], Af is a morphological gene involved in leaves shape, other markers are SSRs (detected allele in brackets); (f) Minor allele frequency (MAF) of each detected marker in the collection; (g) Variables are coded as described in Additional file 4; (h) significant p-value of the marker-trait association &lt; 2.5E-5; (i) mean value of the trait corrected with the effect of all markers included in the MLMM analysis; (j) allelic effect of the marker on the variable, the sign depends on the allele code; (k) standard error at the marker around the mean value of the trait in the collection. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3634880_d3.v1
title: Additional file 2: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Simple sequence repeat (SSR) markers used to genotype the pea-Aphanomyces collection. (a) main Aphanomyces resistance quantitative trait loci (QTL) defined in [43]. (XLSX 14 kb)
DOI: 10.17863/cam.33542
title: Research data supporting "Stability of point defects near MgO grain boundaries in FeCoB/MgO/FeCoB magnetic tunnel junctions"

description: Input files for the simulations performed in the publication "Stability of point defects near MgO grain boundaries in FeCoB/MgO/FeCoB magnetic tunnel junctions". The oxygen point defects were generated by removing oxygen atoms in MgO grain boundary structures from a previous work Bean, J. J., Saito, M., Fukami, S., Sato, H., Ikeda, S., Ohno, H., … McKenna, K. P. (2017). Atomic structure and electronic properties of MgO grain boundaries in tunnelling magnetoresistive devices. Scientific Reports, 7(January), 45594. https://doi.org/10.1038/srep45594. The boron interstitials were generated by randomly guessing a position in the MgO grain boundary supercells, if the boron to be inserted was greater than 1.0 from nearby Mg and O ions it would be inserted. The software package (VASP) was used to perform the DFT calculations and hence results in the paper from these input structures. Input files for all simulations are included however output files could not be included due to their large size. There is an arbitrary naming system used to describe each point defect. Note that the output position files are also given in the form of CONTCAR files thus reoptimisation is not required.
DOI: 10.6084/m9.figshare.c.3634880_d4.v1
title: Additional file 14: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Marker haplotype composition of the pea-Aphanomyces collection. (a) Name of marker haplotype carried by each line as described in Additional file 13, at each of the 14 consistent linkage disequilibrium (LD) blocks detected; dark green and red: favourable and unfavourable marker haplotypes, respectively, as defined in the Material and Methods section of the manuscript; (b) coordinates of each line of the collection on the first Multiple Factor Analysis principal component; the pea lines of the collection are ranked according to these coordinates; (c) Composition of each line in favourable and unfavourable haplotypes, is described in Additional file 13; (d) marker haplotypes with either a missing value or heterozygous score for at least one marker of a LD block. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3634880_d5.v1
title: Additional file 16: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Least square means (LSMeans) of phenotypic data in the pea-Aphanomyces collection after ANOVA. Variables are coded as in Additional file 4. NA: missing data. (XLSX 71 kb)
DOI: 10.15468/dl.rkq74d
title: Occurrence Download

description: A dataset containing 678180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 678180 records from 210 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037884-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3634880_d8.v1
title: Additional file 15: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Annotation of markers in detected linkage disequilibrium (LD) blocks for putative candidate genes. (a) LD block were constructed with markers detected by genome-wide association mapping and markers in LD with them, LD block are named according to Additional file 11; (b) genetic positions are estimated as described in Additional file 11; For each LD block:(c) traits associated with markers in the LD block; (d) Pairwise LD between each marker and the marker(s) detected by GWA in the LD block (detected marker in bold); (e) putative protein annotation underlying each marker based on comparative Blast X data from Tayeh et al. [49], see Methods section; (f) putative function of the protein in plant disease resistance based on the literature; (g) putative function of the protein in plant development based on the literature; (h) reference for protein function involved in plant disease resistance or plant development; (i) Pea cloned genes referred in literature; (j) extract of annotation data from Tayeh et al. [49], Blast X of marker sequence onto P. sativum, M. truncatula, G. max and A. thaliana proteins. (XLSX 131 kb)
DOI: 10.6084/m9.figshare.c.3634880_d6.v1
title: Additional file 7: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Variable contribution in the two first Multiple Factor Analysis (MFA) principal components. (a) Variables are coded as described in Additional file 4, (b) percentage of variable contribution in the construction of the MFA axis, ‘*’: the six highest contributions; (c) cos2 indicates the representation quality of the variable on the MFA axis, ‘*’: 0.2 &lt; cos2 &lt; 0.5, ‘**’: cos2 &gt; 0.5; (d) correlation between variable and MFA axis, ‘*’: 0.5 &lt; r 2 &lt; 0.8, ‘**’: r 2 &gt; 0.8. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3634880_d9.v1
title: Additional file 13: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Description of linkage disequilibrium (LD) block haplotypes in the pea-Aphanomyces collection. (a) LD blocks are named as described in Additional file 11; (b) Each LD block is subdivided into marker haplotypes according to its allelic composition. Marker haplotypes are named with the LD block name followed by an Arabic numeral. Only haplotypes without missing values or heterozygous markers are shown; For each LD block: (c) list of markers significantly detected by genome-wide association in the LD block; (d) the first line is a list of the markers included in the LD block (detected markers in bold font and their markers in (LD) in plain font); (e) the second line is the genetic positions of the listed markers on the genetic map described in Additional file 11; (f) following lines are the pairwise LD r 2 values between each marker defined in the LD block and the marker detected by GWA; (g) For SNP markers, ‘AA’ and ‘BB’ are allele codes of Genome Studio analysis while for SSR markers, amplicon lengths are indicated. For each Aphanomyces resistance associated marker, enhancing allele(s) is in bold dark green font and unfavourable allele(s) in bold dark red font; (h) the first line is the list of the variables significantly associated with a marker in the LD block, variables are described as in Additional file 4; (i) next lines are p-values of the marker-trait associations; (j) grey or coloured lines are mean phenotypic values ± standard error for marker haplotypes carried by more than 5 % of the lines from the pea-Aphanomyces collection, letters indicate significantly different means (Tukey-HSD, α &lt; 0.05); dark green and red haplotypes: favourable and unfavourable haplotypes of the LD block, respectively, as defined in the Materiel and Methods section of the manuscript. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.c.3634880_d11.v1
title: Additional file 17: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Genotyping data of the pea-Aphanomyces collection used for the GWA analysis before filters and imputation. NA: missing data. (a) Morphological gene genotyping data are coded “AA” when phenotypes are white flowers, normal leaves or smooth seeds for A, Af and R genes, respectively, and “BB” when they are colored flowers, afila leaves or wrinkled seeds; (b) PCR specific genotyping data are coded “AA” or “BB” when specific to the first or second allele; (c) SSR genotyping data are presented with the allele size (in bp); (d) SNP genotyping data are coded “AA” or “BB” when homozygous for the first or second allele, “AB” when heterozygous. (XLSX 7252 kb)
DOI: 10.6084/m9.figshare.c.3634880_d12.v1
title: Additional file 12: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Information on the connectivity between projected maps. (a) HMap: consensus map from Hamon et al. [43]; (b) TMap: consensus map from Tayeh et al. [49]; (c) number of common markers between HMap and TMap for each linkage group (LG); (d): Number of inversions of marker positions on each LG; (e) number of inversions of marker positions in confidence intervals of the quantitative trait loci (QTL) described by Hamon et al. [43]. (XLSX 11 kb)