cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28746827.v1
title: Urban Escapes: Seattle Rooftop Decks

description: Seattle rooftop decks refer to the finished deck structures built atop residential or commercial buildings, offering private outdoor space in dense urban environments. Highly valued for providing stunning city, mountain, or water views and outdoor living potential where yard space is limited, these decks are increasingly popular features in Seattle's development.<br>
DOI: 10.17632/gdt2xwrbtz
title: Experimental Dataset on the Compressive Mechanical Properties of High-density Pressboard Used in Power Transformers Spacers

description: The dataset includes measurements of the degree of polymerisation in both new and aged high-density pressboard, following the guidelines of IEC 60450. Additionally, force-displacement compressive curves were obtained for the high-density pressboard samples in various ageing states.
DOI: 10.6084/m9.figshare.1218448.v1
title: Effect of the shrub on neighbor flowering plants

description: Description/ Question/ Methods The experiment was performed to determine if the <em>Dodonaea viscosa</em> shrub size and proximity has a positive (facilitative) or negative (competitive) affect on the abundance of nearby flowering-plant species. The experiment took place on shrubs present under powerline corridors south of York University. Each shrub was numbered and a number generator app was used to determine the order in which the shrubs were measured. The size of each shrub was accounted for by measuring the height, length and width of the shrub. The end of measuring tape was placed on the main stem and measured up till five meters south of the shrub. The soil thermometer was placed at each marked distance (1m, 3m & 5m) to measure the soil temperature. At each marked distance, the 1m x 1m quadrant was placed to determine the count of flowering plants according to the species present in the quadrant. A total of 39 shrubs were measured through the three day period.
DOI: 10.6084/m9.figshare.21290514.v1
title: Genome Assembly v1 Abeoforma whisleri

description: Draft genome assembly Abeoforma whisleri. Long Nanopore reads, ~40-70x coverage, assembler - Flye Shabardina V.
DOI: 10.6084/m9.figshare.24086121.v4
title: <b>Annotation files for eccDNA in mouse brain tissue</b>

description: The mm39 dataset contains the detection results of eccDNA from the mm39 genome.The Annotation dataset contains 5 types of annotation files for eccDNA in mouse mm10 genome, including eccDNA, gene, miRNA, transposable elements (TEs), and cis-regulatory elements (cCREs).eccDNA: The file contains information on the chromosome, start and end positions, and length of eccDNA in the samples.gene: The files include information on the intersection and overlap length of eccDNA in the samples with genes from the mm10 GFF file.miRNA: The files include information on the intersection and overlap length of eccDNA in the samples with miRNA from the mirbase database.TEs: The files include information on the intersection and overlap length of eccDNA in the samples with transposable elements from the RepeatMasker database.cCREs: The files include information on the intersection and overlap length of eccDNA in the samples with cis-regulatory elements (cCREs) from the ENCODE database.
DOI: 10.17632/br92x9768y
title: Canine Facial Phenotypes and Expressive Behaviors

description: This data repository includes individual coding sheets for facial behavior and features (including DogFACS behavioral analyses and original schematic physical phenotype analyses), along with owner-reported survey responses for N=103 companion dogs. Full dataset and dictionary also included for all subjects in final sample. 

To assess the complexity of facial physical phenotype and assign a corresponding score, each dog’s face was evaluated using an original matrix (Sexton, 2023) that accounted for both pigmentation and perceptible marks/patterning. Dog facial phenotypes were scored by humans unfamiliar with the individual dogs (i.e. not the human participants). 

Objective behavioral measure of facial movements (expressivity) were assessed by independent coders using the Dog Facial Action Coding System (DogFACS) (Waller, et al., 2013). Two certified DogFACS coders manually coded the video samples independently according to the DogFACS manual (Waller et al., 2013).

Data associated with:
Sexton, C.L. 2023. “What is Written on a Dog’s Face? Implications of Phenotype Diversity in Human-directed Canine Communication. Doctoral Dissertation. The George Washington University (ProQuest);

Sexton, C.L.; Buckley, C.; Lieberfarb, J.; Subiaul, F.; Hecht, E.E.; Bradley, B.J. What Is Written on a Dog’s Face? Evaluating the Impact of Facial Phenotypes on Communication between Humans and Canines. Animals 2023, 13, 2385. https://doi.org/10.3390/ani13142385
DOI: 10.17632/vzmd24hzhm
title: An ultra-low-cost and adjustable in-house electrospinning machine to produce polymer nanofibers 

description: Design of ultra-low-cost and adjustable in-house electrospinning machine to produce polymer nanofibers
DOI: 10.25416/ntr.18513119.v2
title: Wikipedia for learning and Teaching in Education - Pecha Kuha

description: This Pecha Kucha covers example creative approaches to incorporating Wikipedia into education. <br>Gains include digital and information literacies for the learners and contribution to the global social good. The transcript and source file are attached to this item.<br>The link to the video resource can be accessed here:https://youtu.be/44FCA3KqQBg
DOI: 10.6084/m9.figshare.11663097.v1
title: "Angiosperm speciation cools down in the tropics" scripts

description: R scripts to generate analyses and crude versions of the plots for the manuscript "Angiosperm speciation cools down in the tropics" by Javier Igea and Andrew Tanentzap<br><br>
DOI: 10.6084/m9.figshare.24113349.v1
title: The assembly and annotation of Zebrina V2.0

description: The assembly and annotation of Zebrina V2.0
DOI: 10.6084/m9.figshare.24131997.v1
title: Enhanced response of soil respiration to experimental warming upon thermokarst formation

description: Data involving in normalized Rs response, soil substrate and abundances of microbial functional genes at Shaliuhe site, and <i>Q</i><sub>10</sub> values based on laboratory incubations across the thermokarst-impacted sites on the Tibetan Plateau.
DOI: 10.6084/m9.figshare.28815011.v1
title: Special Issue of the <i>International Journal of Disaster Risk Science</i> on: “<b>The Sendai Framework Celebrates Its 10</b><sup><strong>th</strong></sup><b> Birthday”</b>

description: <b>Extract from Prof Ilan Kelman’s Editorial to the Special Issue</b>:<i>T</i><i>his 10-year mark offers us an opportunity to take stock of progress and highlight issues to move the agenda on disaster risk reduction forward and to understand what worked and is working, what did not work and is not working, how we should pivot for the remaining 5 years, and what it means and does beyond 5 years.</i><i> </i><i>This special issue reflects on where the SFDRR has come from, how it applies and does not apply, and where it might be going for its final third. It offers elements of celebration, as per this special issue’s title, alongside areas of commiseration. Recognizing that no process could ever be perfect, or will even be agreed on as being perfect, for 18 March 2025, the articles and commentaries here critique the SFDRR in order to suggest positives and </i><i>negatives, with constructive approaches for improvement without losing the gains.</i>
DOI: 10.6084/m9.figshare.7762748.v1
title: MySQL Dump of main dataset

description: SQL Dump, with three tables:<br>+-----------------+| Tables_in_OODev |+-----------------+| FileID || ProjectID || summary |+-----------------+<br>Desc of each:mysql&gt; desc FileID;+----------+---------+------+-----+---------+-------+| Field | Type | Null | Key | Default | Extra |+----------+---------+------+-----+---------+-------+| Project | int(11) | YES | | NULL | || FullPath | text | YES | | NULL | || ID | int(11) | YES | | NULL | |+----------+---------+------+-----+---------+-------+<br>mysql&gt; desc ProjectID;+-------+---------+------+-----+---------+-------+| Field | Type | Null | Key | Default | Extra |+-------+---------+------+-----+---------+-------+| Name | text | YES | | NULL | || ID | int(11) | YES | | NULL | |+-------+---------+------+-----+---------+-------+<br>mysql&gt; desc summary;+-----------+---------+------+-----+---------+-------+| Field | Type | Null | Key | Default | Extra |+-----------+---------+------+-----+---------+-------+| Project | int(11) | YES | | NULL | || Type | text | YES | | NULL | || ClassName | text | YES | | NULL | || FileID | int(11) | YES | | NULL | || Authors | int(11) | YES | | NULL | || IFANIN | int(11) | YES | | NULL | || CBO | int(11) | YES | | NULL | || NOC | int(11) | YES | | NULL | || NIM | int(11) | YES | | NULL | || NIV | int(11) | YES | | NULL | || WMC | int(11) | YES | | NULL | || RFC | int(11) | YES | | NULL | || DIT | int(11) | YES | | NULL | || LCOM | int(11) | YES | | NULL | |+-----------+---------+------+-----+---------+-------+<br>
DOI: 10.6084/m9.figshare.1466782.v3
title: Women's preferences for penis size: A new research method using selection among 3D models

description: Women’s preferences for penis size may affect men’s comfort with their own bodies and may have implications for sexual health. Studies of women’s penis size preferences typically have relied on their abstract ratings or selecting amongst 2D, flaccid images. This study used haptic stimuli to allow assessment of women’s size recall accuracy for the first time, as well as examine their preferences for erect penis sizes in different relationship contexts. Women (N = 75) selected amongst 33, 3D models. Women recalled model size accurately using this method, although they made more errors with respect to penis length than circumference. Women preferred a penis of slightly larger circumference and length for one-time (length = 6.4 inches/16.3 cm, circumference = 5.0 inches/12.7 cm) versus long-term (length = 6.3 inches/16.0 cm, circumference = 4.8 inches/12.2 cm) sexual partners. These first estimates of erect penis size preferences using 3D models suggest women accurately recall size and prefer penises only slightly larger than average.
DOI: 10.6084/m9.figshare.27986252.v1
title: Data for Critical Evaluation of Bibliometric Reviews in Education

description: bibliometric reviews of educational topics across all disciplines
DOI: 10.6084/m9.figshare.3492446.v1
title: Breast cancer images

description: Images from breast tissue of patients
DOI: 10.6084/m9.figshare.11933355.v1
title: Data and supplemental tables from Colour dimorphism in labrid fishes as an adaptation to life on coral reefs

description: File contains the data presented in Table S1 and Table S4
DOI: 10.6084/m9.figshare.13065986.v31
title: Gastric cancer lymph node data set

description: This is a dataset of pathological lymph nodes for gastric cancer. It can be used to test a gastric cancer lymph node metastasis detection model proposed in "Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning".<br>
DOI: 10.6084/m9.figshare.5123341.v1
title: Supplementary Material for: ARIEL and AMELIA: Testing for an Accumulation of Rare Variants Using Next-Generation Sequencing Data

description: <i>Objectives:</i> There is increasing evidence that rare variants play a role in some complex traits, but their analysis is not straightforward. Locus-based tests become necessary due to low power in rare variant single-point association analyses. In addition, variant quality scores are available for sequencing data, but are rarely taken into account. Here, we propose two locus-based methods that incorporate variant quality scores: a regression-based collapsing approach and an allele-matching method. <i>Methods:</i> Using simulated sequencing data we compare 4 locus-based tests of trait association under different scenarios of data quality. We test two collapsing-based approaches and two allele-matching-based approaches, taking into account variant quality scores and ignoring variant quality scores. We implement the collapsing and allele-matching approaches accounting for variant quality in the freely available ARIEL and AMELIA software. <i>Results:</i> The incorporation of variant quality scores in locus-based association tests has power advantages over weighting each variant equally. The allele-matching methods are robust to the presence of both protective and risk variants in a locus, while collapsing methods exhibit a dramatic loss of power in this scenario. <i>Conclusions:</i> The incorporation of variant quality scores should be a standard protocol when performing locus-based association analysis on sequencing data. The ARIEL and AMELIA software implement collapsing and allele-matching locus association analysis methods, respectively, that allow the incorporation of variant quality scores.
DOI: 10.17632/2fcp9rdr9z
title: Supplementary Material for "Validation of Risk Prediction Models for Sentinel Lymph Node Metastasis in Melanoma in a High UV Index Region"

description: Supplementary Material for "Validation of Risk Prediction Models for Sentinel Lymph Node Metastasis in Melanoma in a High UV Index Region"
DOI: 10.6084/m9.figshare.28557581.v1
title: SynthesisNet surrogate checkpoints

description: Please see https://github.com/shiningsunnyday/SynthesisNet/.
DOI: 10.6084/m9.figshare.19499981.v2
title: patches and local annotations, slide 113, zoom 124x124 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.27122211.v1
title: Example datasets used by W. Maddison in "PhyIN: Trimming alignments by phylogenetic incompatibilities among neighbouring sites", submitted to PeerJ 2024

description: These datasets were used to test alignment trimming methods, including PhyIN. The data is from Ultraconserved Elements (UCE) sequence capture methods. The data are from 5 studies cited in included README files. Data files included are the original untrimmed alignments as well as alignments trimmed in various ways.NOTE: This is a preliminary version of these datasets, for use during review of the paper describing PhyIN. If the review process results in changes, these datasets may be superseded by a new version.
DOI: 10.6084/m9.figshare.27377529.v1
title: <b>Relationship’s magnitude between intraspecific trait variation and ecological responses: A meta-analysis</b>

description: <b>1.</b> Intraspecific trait variability (ITV) matters in ecology, but we need to evaluate how much changes in ITV can affect ecological dynamics. Specifically, it remains unclear which factors drive the magnitude of relationships between ITV and ecological responses across biological scales.<b>2.</b> We asked whether the magnitude of relationships between ITV and ecological responses differ (<i>i</i>) between intraspecific levels (among- <i>vs</i>. within- populations), (<i>ii</i>) among ecological responses across levels of biological organisation (from the individual to the ecosystem levels), and (<i>iii</i>) among three main trait categories (morphology, physiology and behaviour).<b>3.</b> We used a multi-level meta-analysis, synthesising 1008 effect sizes from 188 studies encompassing relationships between traits measured among individuals or populations of animals across seven taxonomic groups and a broad range of ecological responses across biological levels, from ecological performances (resource acquisition rate, trophic niche, growth rate) and fitness (survival, reproduction), to the whole ecosystem (community structure, ecosystem functioning).<b>4.</b> The average effect size of the magnitude of relationships between ITV and ecological responses was |<i>r</i>| = 0.24 [0.20 – 0.27] (95% confidence intervals). First, effect sizes were twice higher at the population than at the among-individual level, but this difference was not significant. Second, effect sizes were higher for ecological performance (foraging, diet), community and ecosystem responses than for fitness responses (reproduction). Third, effect sizes for physiological and behavioural traits were both on average 28% higher than for morphological traits.<b>5.</b> Our results confirm the central role of ITV in animals for ecological processes and suggest giving a special emphasis on physiological and behavioural traits to improve that issue. Future studies should go further, in adopting a multi-trait approach and considering the covariation among traits. To deepen our understanding of factors mediating the links between ITV and ecological dynamics, we need to emphasise further trait-mediated interactions, keystone and engineering species, as well as non-linearity of ecological relationships.
DOI: 10.6084/m9.figshare.23960727.v1
title: Phenotypes and genomes for: <b>The genomics and physiology of abiotic stressors associated with global elevation gradients in </b><i><b>Arabidopsis thaliana</b></i>

description: This data contains:1) Phenotypes taken in a diverse panel of ecotypes (up to 270) in three large-scale experiments were we measured plant responses to high elevation stressors: low partial CO<sub>2 </sub>pressure, high light, and night freezing. Also included are environmental conditions obtained from the CHELSA repository based on coordinates of origin. For a full explanation of abbreviations please contact Diana Gamba. 2) a VCF file contain ing biallelic SNPs of 16 newly sequenced Arabidopsis accessions from eastern Africa.3) genomic maps (bam files) of newly sequenced accessions mapped to the TAIR10 Arabidopsis thaliana reference genome.For methods, please refer to the associated manuscript.
DOI: 10.6084/m9.figshare.28597496.v1
title: Medical Images Dataset

description: Our research focuses on enhancing medical image classification by optimizing a <b>CNN-SVM hybrid model</b> using an improved <b>Grey Wolf Optimizer (GWO)</b>. While CNNs excel at feature extraction, they often face challenges in handling complex medical images efficiently. To address this, our study integrates SVM for classification and fine-tunes model parameters using an enhanced GWO. The approach is tested on four diverse datasets—<b>Brain Tumor Database (BTD), Chest Pneumothorax Dataset (CPD), Gastrointestinal Cancer Dataset (GCD), and ISIC 2019 Skin Lesion Dataset (SLD)</b>—covering MRI, X-ray, endoscopic, and dermatoscopic imaging. Performance evaluation using multiple metrics demonstrates the model’s effectiveness, achieving high accuracy across all datasets.
DOI: 10.6084/m9.figshare.29063114.v1
title: Data Repository.docx

description: The input parameters for the different layers are listed in detail in Tables 1 and 2. Optimization of different HTL parameters for D1 device such as thickness, acceptor density, defect density and interface defect density for HTL/active layer has been done. The optimization of parameters of the perovskite absorber layer such as thickness, acceptor density, defect density for D1 and D2 device structures are then carried out; followed by the series and shunt resistance, operating temperature of the cell for both the device structures D1 and D2. Lastly, the plot for optimized device and quantum efficiency have been studied. Furthermore, all the data used for carrying out this simulation work have been depicted in tabular form under suitable sections.
DOI: 10.6084/m9.figshare.9828827.v7
title: Harmonization of DMSP and VIIRS nighttime light data from 1992-2021 at the global scale

description: The dataset contains (1) temporally calibrated DMSP-OLS NTL time series data from 1992-2013; and (2) converted NTL time series from the VIIRS data (2014-2021) <br> Spatial resolution: 30 arc-seconds (~1km) <br> Information about the composited images from the calibrated DMSP dataset: F10(1992-1994); F12(1995-1996); F14(1997-2003); F16(2004-2009); F18(2010-2013) <br> We suggested using pixels with DN values greater than 7.
DOI: 10.17632/67wjsy5hd2
title: Replication - FDI inflows in Europe: does investment promotion work?

description: Replication folder including detailed instructions and STATA .do files to replicate the results included in the paper 'FDI inflows in Europe: does investment promotion work?' published in the Journal of International Economics (2021) by Riccardo Crescenzi, Marco Di Cataldo, and Mara Giua.
DOI: 10.6084/m9.figshare.28464743.v1
title: <b>合生元</b><b> </b><b>结合</b><b>2'-岩藻糖基乳糖和</b><b><i>双歧杆菌</i></b><b>可减轻 </b><b>神经发育障碍</b><b> 丙戊酸诱导的</b>

description: <b>合生元</b><b> </b><b>结合</b><b>2'-岩藻糖基乳糖和</b><b><i>双歧杆菌</i></b><b>可减轻 </b><b>神经发育障碍</b><b> and ASD-like behaviors induced by Valproic Acid</b>
DOI: 10.6084/m9.figshare.1029370.v2
title: Sparse Regression by Projection and Sparse Discriminant Analysis

description: Recent years have seen active developments of various penalized regression methods, such as LASSO and elastic net, to analyze high-dimensional data. In these approaches, the direction and length of the regression coefficients are determined simultaneously. Due to the introduction of penalties, the length of the estimates can be far from being optimal for accurate predictions. We introduce a new framework, regression by projection, and its sparse version to analyze high-dimensional data. The unique nature of this framework is that the directions of the regression coefficients are inferred first, and the lengths and the tuning parameters are determined by a cross-validation procedure to achieve the largest prediction accuracy. We provide a theoretical result for simultaneous model selection consistency and parameter estimation consistency of our method in high dimension. This new framework is then generalized such that it can be applied to principal components analysis, partial least squares, and canonical correlation analysis. We also adapt this framework for discriminant analysis. Compared with the existing methods, where there is relatively little control of the dependency among the sparse components, our method can control the relationships among the components. We present efficient algorithms and related theory for solving the sparse regression by projection problem. Based on extensive simulations and real data analysis, we demonstrate that our method achieves good predictive performance and variable selection in the regression setting, and the ability to control relationships between the sparse components leads to more accurate classification. In supplementary materials available online, the details of the algorithms and theoretical proofs, and R codes for all simulation studies are provided.