cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/2vff7732yp
title: Supplemental material for PhD thesis Clinical (glyco)proteomics

description: Supplemental material for PhD thesis "Clinical (glyco)proteomics: From pre-clinical discovery to translational diagnostics in infectious disease and complement deficiency".

Chapter 1: Introduction and scope of this thesis
Chapter 2: Biosynthetic homeostasis and resilience of the complement system in health and infectious disease
Chapter 3: Quantitative multiplex profiling of the complement system to diagnose complement-mediated diseases
Chapter 4: Semi-quantitative multiplex profiling of the complement system identifies associations of complement proteins with genetic variants and metabolites in age-related macular degeneration
Chapter 5: Impact of infection on host protein glycosylation and the discovery of novel biomarkers to differentiate bacterial from viral infection
Chapter 6: Discussion and future perspectives


The full PhD thesis is available through the Radboud University Repository at https://repository.ubn.ru.nl/
© These supplementary data have been published previously with the original open access publications. Please cite the original publications when referring to these data.
DOI: 10.17632/7zdjt8dtk5
title: Detrimental effects of urbanization on the diet, health, and signal coloration of an ecologically successful alien bird

description: Custom-made MATLAB program calibrated for the U-type eyes and used to analyse reflectance files generated with a AvaSpec 2048 spectrophotometer and an Avalight-XE light source (Avantes, Netherlands).
DOI: 10.17632/hd962mb4rh
title: An adenovirus based recombinant herpes simplex virus 2 (HSV-2) therapeutic vaccine is highly protective against acute and recurrent HSV-2 disease in a guinea pig model

description: Recombinant adenovirus-based vaccines including rAd-gD2ΔUL25, rAd-ΔUL25, and rAd-gD2 immunized guinea pig model. Humoral and cellular immune responses were described.
DOI: 10.17632/j7sygcyswb
title: Nested Sampling of Materials' Potential Energy Surfaces: Case Study of Zirconium

description: The nested sampling (NS) method was originally proposed by John Skilling 
to calculate the evidence in Bayesian inference. The method has since been utilised in various research fields, and here we focus on how NS has been adapted to sample the Potential Energy Surface (PES) of atomistic systems, enabling the straightforward estimation of the partition function.
Using two interatomic potential models of zirconium, we demonstrate the workflow and advantages of using nested sampling to calculate pressure-temperature phase diagrams.
Without any prior knowledge of the stable phases or the phase transitions, we are able to identify the melting line, as well as the transition between the body-centred-cubic and hexagonal-close-packed structures.
Supporting data for Proceedings paper of MaxEnt Conference 2022.
DOI: 10.17632/mvn2tgwxs5
title: THE IMPACT OF SURFACTANTS AND PARTICLES ON THE STABILITY OF EMULSION SYSTEMS

description: The data presented is to assess and predict the stability of emulsions observed in the North Coast Marine Acreage (NCMA) of Trinidad and Tobago. This is to (1) Determine the stabilizing factors of emulsions observed in NCMA via laboratory work, (2) Establish a model for predicting emulsion stability expected of a surfactant stabilized Pickering emulsion system and (3) Compare the results of laboratory testing to model results using NCMA emulsion samples.
DOI: 10.17632/smvbm47n3z
title: FAP-P VAP Chile

description: This information allows us to demonstrate the usefulness of the FilmArray Pneumo multiple molecular panel (FAP-P) in the early diagnosis of VAP in a cohort of 71 COVID-19 patients with suspected VAP. High sensitivity, specificity and negative predictive value were demonstrated. It facilitated, together with the results of conventional cultures, to rule out the presence of VAP in 40% of the cohort. Clinic Data FAP-P VAP Chile. This information refers to a Chilean retrospective cohort of 71 critical COVID-19 patients with suspected VAP in whom FAP-P was used together with conventional cultures in respiratory samples in order to confirm or rule out VAP. It describes the clinical characteristics, evolution in critical care, complications, antibiotic treatment, and 30-day mortality. Microbiol Data FAP-P VAP Chile. This database consists of the joint information of the results of the FilmArray Pneumo multiple molecular panel in 48 respiratory samples from patients with VAP microbiologically confirmed and the results of the concomitant conventional cultures. Sensitivity, specificity, positive and negative predictive value can be obtained from it. The number of bacterial nucleic acid copies per mL (FAP-P) and the number of cfu / mL of the cultures are also described.
DOI: 10.17632/ybknrbw3rg
title: Supporting information and modeling approach database for the manuscript: Fault resonance process and its implications on seismicity modulation on active Fault system

description: The supporting information file contains ten supplementary figures, three supplementary Tables containing periodicity of the Koyna-Warna seismic zone, list of tidal components dominating in each tremor patches of Nankai, SW Japan and Nex value (%) for different tremor patches of Nankai, SW Japan. It also contains method of Magnitude completeness (Mc) and b-value estimation,Periodicity analysis using Schuster Spectra,Tidal Stress Estimation,Percentage of Excess value (Nex) Estimation and Justification Fault resonance parameters
DOI: 10.17632/258zkkdpb9
title: Effects of High Concentration Hydrogen Water Intake on Active Oxygen and Performance in Soccer Players

description: Objects : This study aimed to contribute towards improving athletic performance by comparing the effects of highly concentrated hydrogen intake before and during exercise on soccer players' metabolic and athletic performance. Materials and methods : This study followed a single-blind crossover design involving 10 male college soccer players. Before this experiment, the Vmax measurement and experimental familiarization stage were performed through pretesting. The exercise load test in this experiment involved a long-term intermittent high-intensity exercise protocol that reflects the specificity of soccer. It consisted of seven cycles taking about 120 minutes. Placebo (mineral water) or highly concentrated hydrogen water was administered 30 min before the exercise load test. Data: RER, VO2, VCO2, Fat oxidation, Carbohydrate oxidation, Heart rate, Active oxygen, Running time, Running distance.
DOI: 10.17632/4c8xf6776c
title: Data for: Early Oligocene Podocarpium (Leguminosae) from Qaidam Basin and its paleoecological and biogeographical implications

description: Table S1. World wide megafossil records of Podocarpium (Fabaceae). Table S2. Valve Morphometrics of Podocarpium (Fabaceae) from previously published and present specimens.
DOI: 10.17632/8ctvcn8jjm
title: Supplemental Table 1. Insurance Coverage of Any Keloid Scar Treatments

description: Supplemental Table 1. Insurance Coverage of Any Keloid Scar Treatments
DOI: 10.17632/9ft5tnwdc8
title: Stress-path-dependent effective medium model for granular media - Comparison with experimental data

description: Experimental data used in Torset and Holt 2020: Stress-path-dependent effective medium model for granular media - Comparison with experimental data. V2 includes some fixes to units and number of significant digits. The data are gathered by SINTEF industry (petroleum), with Jørn Stenebråten as responsible. The data were gathered independent of each other, and the collections had different objectives, but they were all compiled here for use in testing a new formulation of the effective medium theory from Walton (1987), allowing for a transversely isotropic stress state.
DOI: 10.17632/dvff2dp9tg
title: Suplementary data_Modified amino-dextrans as carriers of Gd-chelates for retrograde transport and visualization of peripheral nerves by magnetic resonance imaging (MRI)

description: FPLC spectra, SDS-PAGES, ATR-FTIR and PCS of modified DTPA/DOTA amino-dextrans
DOI: 10.17632/gxpzfycs5r
title: SNOWPACK configuration files for alpine and subalpine site at Niwot Ridge

description: These files can be used to run the SNOWPACK model (v3.4.5) at the alpine (sdl) and subalpine (c1) sites at the Niwot Ridge LTER.
DOI: 10.17632/hxw9r4y964
title: Data for: Behaviour of workers giving and asking for help is related to body size in a monomorphic ant

description: Raw data for: Behaviour of workers giving and asking for help is related to body size in a monomorphic ant
DOI: 10.17632/kmxdxhjvcz
title: Data deposition for original research article

description: Original data deposition for the manuscript entitled "The role of voltage-gated chloride channels in the epileptogenesis of temporal lobe epilepsy".
DOI: 10.17632/pgrrz5sjty
title: Endemic Bladder Calculi

description: SPSS output files for Data of endemic bladder calculi
DOI: 10.17632/vfz82847nr
title: Research data supporting "Toward automatic analysis of random monolayers: The effect of pair correlation". B-spline representations of integral Ic(q).

description: The files contain knots and coefficients of third order (quadratic) B-spline representations approximating the integral Ic(q) appearing in the equation for power spectral density of particle or cavity monolayer.
The integral depends on the total correlation function of objects forming the monolayer. We used B-spline representations of the correlation functions computed for the classical RSA systems at five values of surface coverage: 0.1, 0.2, 0.3, 0.4, and 0.5. For each coverage, we generated 20 replicas of the correlation function, as described at  http://dx.doi.org/10.17632/s4k84ccxww.2. Next, for each replica, we numerically computed the integral using the procedure DBFQAD of SLATEC library. This way we got 1E5 values of the integral at equidistant wavenumbers in the interval from 1E-3 to 1E2. After ensemble averaging we got 1E5 arithmetic mean values of the integral and standard deviations of the means, for each coverage. We identified and compared the maximum values of the standard deviation for each of the five coverages. The maximum standard deviations decreased with the increase in coverage from 1E-3 at coverage 0.1 to 8E-5 at coverage 0.5. Finally, we fit B-spline representations to the averaged integrals. For that, we used the B-spline fitting procedure splrep of the package SciPy.interpolate included in the Python-based open-source library SciPy. Considering the very small values of maximum standard deviations of the means, we used third order (quadratic) B-splines with the default knot vector generated by the procedure splrep, i.e., with the knot separation distance equal about 1E-3.
To calculate the integral with the B-splines you can use the procedures splev or BSpline of the module SciPy.interpolate of SciPy library v. 1.1.0. Knot vectors in the attached files begin and end with two improper knots, in accordance with the requirements of the procedures. For details, see the paper: P. Weroński & K. Pałka, "Toward automatic analysis of random monolayers: The effect of pair correlation", Measurement 179 (2021) 109536.
DOI: 10.17632/xhm4hpd97s
title: Radar derived convective storms statistics over MT region

description: The datasets contain convective storm statistical properties derived from S-band weather radar over the Monsoon trough region (India)
DOI: 10.17632/z7bgfgxkhd
title: Data for: The dependence of root extraction in a non-concatenated morphology on the word-specific orthographic context

description: Raw data, code and analysis output
DOI: 10.17632/2yrvb4s7kw
title: The list of zooplankton taxa of the Vychegda river (in the areas impacted wastewaters of pulp and paper industry)

description: We studied biodiversity of three aquatic communities: phytoplankton, zooplankton and zoobenthos in 2018-2020 in the areas impacted wastewaters of pulp and paper industry. This table presents the list of rotifer and micro-crustacean taxa from samples collected in the middle reaches of the Vychegda River. The list based on the modern taxonomy of the groups under study. Each column of the table corresponds to one point of hydrobiological sampling area of the Vychegda River (I-VI): I – zone of direct influence of wastewater of pulp and paper industry, II – 22.8 km lower than the point I (near the Kochchojyag village), III – 6.4 km lower than the point II (near the Sluda village); IV – zone of direct influence of wastewater of pulp and paper industry (near the Gavrilovka village), V – 11.8 km lower than the point IV (near the Sotchem-vyv village); VI – 5.5 km lower than the point V (near the Ust'-Pozheg village). The list of taxa contains only our own data. The study was performed in part as Federal Tasks of Department of Animals Ecology of the Institute of Biology of Komi Science Centre of the Ural Branch of the Russian Academy of Sciences (AAAA-A17-117112850235-2)
DOI: 10.17632/5v6hhc42xg
title: Research Project 7

description: Psychology Finance Report Project 7-Site Location: District 1, Section 2 (NM), Sector 7 (Albuquerque), BLM collaboration of Ozone Layer/Air Quality-Residents in the area spatial behaviors affected by Ozone tears in the region-Full Abstract with Final Report forthcoming
DOI: 10.17632/6z9wcttr5w
title: Effects of pine plantations on native Ecuadorian Páramo vegetation  

description: Vegetation data and scripts to evaluate the effects of pine plantations on native Ecuadorian Páramo (Antisana, El Cajas, Tisaleo and Cotopaxi).
DOI: 10.17632/7w8mvtbvc2
title: LINF_080015200

description: cysteine peptidase B (CPB); Leishmania infantum
DOI: 10.17632/b78jfg3gn5
title: Archivos IABalance

description: Espacio compartiddo del proyecti IABalance
DOI: 10.17632/fzgjh4tsjp
title: Happy Nurses

description: The purpose of this study was to outline factors of job satisfaction among nurses working in a medium-sized hospital in the Netherlands.

The following data is available:
1.  Dutch transcript of the interviews of 15 nurses
2.  Dutch codelist
3.  Picture of creating themes (Dutch)
DOI: 10.17632/k4fdysy7jf
title: Normative reference value of one breath count in male kabaddi performer

description: The single breath count (SBT) can be used to determine the capacity of lungs volume. The study included 50 participants. Before the test, the demographic and characteristics of the outcome measure were assessed. The single breath count is taught to the participants and recorded in seconds. With respect to Age and BMI, the typical values of the single breath count are (18.02 sec) participants.
Keywords: Single breath count test, single breath count
DOI: 10.17632/ky63cwkf4h
title: Data Extracted from Selected Primary Studies

description: This dataset consists of a list of data that have been extracted from selected primary studies and it is used as part of the analysis for our research paper entitled "Application of Deep Learning in Software Defect Prediction: Systematic Literature Review and Meta-analysis."
DOI: 10.17632/nxgvjwds9f
title: Genome Compositional Domains of Hymenopteran Insects and Representatives of Five Other Insect Orders

description: RESEARCH ABSTRACT
	The compositional structures of eukaryotic genomes have long been known for their non-uniformity. Molecular evolutionists have proposed theories and models to describe eukaryotic genome architecture. Genome sequencing of the European honey bee (Apis mellifera), a model for the biology and evolution of eusocial behavior, has revealed unusual genome compositional characteristics, including a low but heterogeneous GC content and a biased tendency of genes to be located in low GC regions. In this study, we sought to determine whether those striking features are common in eusocial Hymenopteran insect species. Using a recursive segmentation algorithm, we partitioned 26 insect genomes and compared their compositional domains. We found that the genomes of Apis species have the most heterogeneous GC content, and bimodal distribution in GC content is unique to Apis. We also recognized that Hymenopteran's genes tend to be located in low GC content. Though, this bias is only strong in eusocial bees and Indian jumping ant, Harpegnathos saltator. Additionally, our GO analysis suggests that genes in high GC content regions tend to serve important roles in biological regulation processes of honey bee.
DATA DESCRIPTION
	Genome assemblies of 21 hymenopteran insects and representatives of five other insect orders were segmented into GC compositional domains by IsoPlotter 2.4 (Elhaik and Graur 2013) (https://code.google.com/archive/p/isoplotter/). Data files provided per genome assembly are named according to the rule:
[species name]_[assembly name]_GC_content_domains.txt
Files are saved in tab-delimited text format with 5 columns:
	1. Scaffold or Chromosome Accession
	2. Domain Start Coordinate
	3. Domain End Coordinate
	4. Domain Percent GC
	5. Is homogeneous
DOI: 10.17632/s6gvr59g3x
title: Figure 1. Klippel-Trenaunay syndrome. A patient with KTS affecting the left leg.

description: Figure 1. Klippel-Trenaunay syndrome. A patient with KTS affecting the left leg.
DOI: 10.17632/t8tgmrbngc
title: Survey Instrument - Online Optional Survey: Best Practices in the Treatment of Melasma with a Focus on Patients with Skin of Color

description: The standard-of-care survey in melasma was started by a steering committee partnered with Galderma Laboratories to assess and identify the current practices in the management of melasma, associated gaps in the standard of care, and determine the gold-standard treatment.
DOI: 10.17632/vnkbcjtcvr
title: Green Synthesis of Lactone-Based Conjugated Polymers for n-Type Organic Electrochemical Transistors

description: Data on OECT performance and impedance measurements. WYZ-400 is p(C-T), WYZ-393 is p(C-g2T), WYZ-401 is p(N-T), and WYZ-412 is p(C-2T).
DOI: 10.17632/xtctpg67k3
title: Differential proteins in synovitis can cause enhanced chemotaxis and phagocytic commitment of CD14++CD16- monocyte subtype in osteoarthritic knee

description: Suppl. 1:The consolidated and individual protein list of SDS-PAGE protein bands of OAS and TBCS produced from ESI-LCMS/MS QTOF. Suppl. 2: The STRING protein-protein interaction networks and their biological functions based on the gene ontology annotation. Suppl. 3: Absolute protein intensities of MALDI imaging Suppl. 4: CD14+, CD14- and monocyte subtypes CM, ITM and NCM percentage count Suppl. 5: The expression of CCR2, CXCR2 and CX3CR1 receptors on CM population Suppl. 6: The PCR array profile of genes in migrated monocytes Suppl. 7: The qPCR gene expression profile of migrated monocytes Suppl. 8: Phagocytosis analysis of migrated monocytes
DOI: 10.17632/yxjbp28tjz
title: Figure 2.

description: Figure 2. Schematic drawing of venous duplex examination with hypoplastic deep venous system and multiple insufficient venous pathways (in red) including vena femoralis profunda (VFP), insufficient vena perforans (IP), intramuscular convolutes (V.GC) and insufficient persistent vena marginalis lateralis.
DOI: 10.17632/3rc6fbdbbp
title: Students’ intentions on the COVID-19 vaccination participation and reasons: A data report in Ho Chi Minh city, Vietnam

description: A number of vaccination campaigns have been launched in many countries including Vietnam for the purpose of community immunization. However, citizens’ participation is a prerequisite for vaccination programs and related policies to meet with success regardless of whether plans are thoroughly prepared or not. Accordingly, this research is conducted to (1) provide insights into students’ perceptions of COVID-19 in general (2) compare and contrast students’ perceptions in terms of gender and (2) analyze students’ choices and reasons for vaccination against COVID-19. This dataset is expected to facilitate effectiveness and efficiency of immunization campaigns and assist policymakers or authorities in the fight against the COVID-19 pandemic.
DOI: 10.17632/hkcks8j3yx
title: Design, Applicability and Effectiveness of strategies to stimulate language in vulnerable children with communication disorders

description: Among the actions carried out, in the intervention processes, it is first evident that strategies based on the lexical and semantic components are applied, under the intervention approaches and models: focused stimulation model and teaching approaches in the natural environment. (the conversation), Language intervention methodology and educational resources. 

The interventions were significantly valuable since it was possible to observe the behavior relatively more in the female than in the male gender, with p 0.019* in expository writing in pre-intervention processes and p 0.035* in post-intervention, and in narrative writing a p 0.019. * pretest and p 0.048* the posttest (Chi2 test); For Fisher's exact test, it is evident that in expository writing a p 0.023* in pre-intervention processes and a p 0.034* post-intervention, and in narrative writing a p 0.023* pretest and a p 0.046* in the posttest; and in the McNemar test with a behavior of p 0.0312* comparing the results of the retest and posttest.

For syntactic processes, punctuation marks and semantics, 61.91 (n=13) are at high and medium level, and 38.1% (n=13) are at doubtful and low levels. For the reading processes in the Chi2 test, Fisher's exact test and McNemar's test, non-significance was found but they were close to it and it was possible to infer the measurable processes with complementary aspects to the intervention, including social, behavioral, consistency with the intervention, the deficiency in a possible cognitive or metalinguistic process; Therefore, it is evident that the variables closest to significance and that the researchers consider worth highlighting are: in the aspect of letter identification, word reading, pseudowords, syntactic and semantic processes and punctuation marks, p 0.040* (significant ) in the pre-intervention; in the process of reading pseudowords and syntactic processes with p 0.067 (close to significant) post-intervention. In the Fisher exact test in the process of reading pseudowords and syntactic processes with p 0.070 (close to significant) post-intervention. But regarding the McNemar test, the processes of reading words, pseudowords, syntactic and semantic processes and punctuation marks, p 0.0625* (close to significant); It should be noted that the researchers state that during the intervention there were participants with reading and writing processes without beginning it and during the intervention they managed to begin to develop the process, therefore the limitation before the aforementioned was greater intervention and frequency in the attendance of the population. to the foundation.
DOI: 10.17632/hkvx8gx2ft
title: Walsh et. al. - Cell Host and Microbe 2022

description: Raw western blot and representative confocal microscopy images used in the paper "The bacterial effector GarD shields Chlamydia trachomatis inclusions from RNF213-mediated ubiquitylation and destruction" by Walsh et al., 2022.