cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24023160.v1
title: Supplementary Material for: Development and validation of a nomogram for predicting all-cause mortality in patients with hemodialysis having pulmonary hypertension

description: Introduction: Patients with end-stage renal disease receiving hemodialysis (HD) have a high morbidity and mortality rate associated with pulmonary hypertension (PH). A nomogram was developed to predict all-cause mortality in HD patients with PH. In this study, we aimed to validate the usefulness of this nomogram. Methods: A total of 274 HD patients with PH were hospitalized at the Affiliated Hospital of Xuzhou Medical University between January 2014 and June 2019 and followed up for 3 years. Echocardiography detected PH when the peak tricuspid regurgitation velocity (TRV) was more than 2.8 m/s. To evaluate the all-cause mortality for long-term HD patients with PH, Cox regression analysis was performed to determine the factors of mortality that were included in the prediction model. Next, the area under the receiver-operating characteristic curve (AUC-ROC) was used to assess the predictive power of the model. Calibration plots and decision curve analysis (DCA) were used to assess the accuracy of the prediction results and the clinical utility of the model. Results: The all-cause mortality rate was 29.1% throughout the follow-up period. The nomogram comprised six commonly available predictors: age, diabetes mellitus, cardiovascular disease, hemoglobin, left ventricular ejection fraction, and TRV. The 1-year, 2-year, and 3-year AUC-ROC values were 0.842, 0.800, and 0.781, respectively. The calibration curves revealed an excellent agreement with the nomogram, while the DCA demonstrated favorable clinical practicability. Conclusion: The first developed nomogram for predicting all-cause mortality in HD patients with PH could guide clinical decision-making and intervention planning.
DOI: 10.6084/m9.figshare.23243893
title: The impact of stormwater management strategies on the flow regime of a peri-urban catchment facing urbanisation and climate change: a distributed modelling study in Lyon, France

description: The relative impact of urbanisation (urban sprawl), climate change (rainfall and evapotranspiration) and stormwater disconnection strategies (implementation of green infrastructure (GI)) on a peri-urban stream in the western suburbs of Lyon, France, was investigated using a distributed, physically based model (J2000P). Results showed that ambitious catchment-scale implementation of GI has the potential to mitigate some hydrological effects of urbanisation, especially a drastic reduction of combined sewer overflows. However, GI did not have a large impact on the stream flow regime, especially in the context of climate change, as the stream is dominated by non-urban contributions. Spatially distributed models have the capacity to inform river managers about the extent of implementation of GI needed to achieve given management goals and highlight some limitations of disconnection strategies. Indeed, while GI improved the resilience of sewer networks to global change, it was not sufficient to compensate for the effects of climate change on streamflow.
DOI: 10.6084/m9.figshare.23267810
title: Sewer network design methodology for low-cost, resilient, and reliable designs

description: When designing a sewer system, the goal is to find the design with the lowest cost while complying with the hydraulic constraints. However, with the emergence of new concerns like climate change and high-density urbanization, those designs must also be reliable and resilient. This is the objective of the present research, to provide an approach for finding low-cost, sewer networks design while considering the reliability and the resilience as a criterion in the selection of the best design. For that purpose, a method is proposed for evaluating resilience and reliability in a variety of designs produced by modifying the objective function of the network’s layout selection model. The methodology was tested in four scenarios using two cost equations and two sewer network benchmarks from the literature. In most of the scenarios, it was possible to find designs with lower cost and higher resilience and reliability than those previously published.
DOI: 10.6084/m9.figshare.23267810.v1
title: Sewer network design methodology for low-cost, resilient, and reliable designs

description: When designing a sewer system, the goal is to find the design with the lowest cost while complying with the hydraulic constraints. However, with the emergence of new concerns like climate change and high-density urbanization, those designs must also be reliable and resilient. This is the objective of the present research, to provide an approach for finding low-cost, sewer networks design while considering the reliability and the resilience as a criterion in the selection of the best design. For that purpose, a method is proposed for evaluating resilience and reliability in a variety of designs produced by modifying the objective function of the network’s layout selection model. The methodology was tested in four scenarios using two cost equations and two sewer network benchmarks from the literature. In most of the scenarios, it was possible to find designs with lower cost and higher resilience and reliability than those previously published.
DOI: 10.6084/m9.figshare.23243893.v1
title: The impact of stormwater management strategies on the flow regime of a peri-urban catchment facing urbanisation and climate change: a distributed modelling study in Lyon, France

description: The relative impact of urbanisation (urban sprawl), climate change (rainfall and evapotranspiration) and stormwater disconnection strategies (implementation of green infrastructure (GI)) on a peri-urban stream in the western suburbs of Lyon, France, was investigated using a distributed, physically based model (J2000P). Results showed that ambitious catchment-scale implementation of GI has the potential to mitigate some hydrological effects of urbanisation, especially a drastic reduction of combined sewer overflows. However, GI did not have a large impact on the stream flow regime, especially in the context of climate change, as the stream is dominated by non-urban contributions. Spatially distributed models have the capacity to inform river managers about the extent of implementation of GI needed to achieve given management goals and highlight some limitations of disconnection strategies. Indeed, while GI improved the resilience of sewer networks to global change, it was not sufficient to compensate for the effects of climate change on streamflow.
DOI: 10.26036/cnp0004710
title: Chromosome-level reference genome of tetraploid Isoetes sinensis provides insights into evolution and adaption of lycophytes

description: Background The Lycophyta species are the extant taxa most similar to early vascular plants that were once abundant on Earth. However, their distribution has greatly diminished. So far, the absence of chromosome level assembled lycophyte genomes, has hindered our understanding of evolution and environmental adaption of lycophytes. Findings We present the reference genome of the tetraploid aquatic quillwort, Isoetes sinensis, a lycophyte. This genome represents the first chromosome-level assembled genome of a tetraploid seed-free plant. Comparison of genomes between I. sinensis and the I. taiwanensis revealed conserved and different genomic features between diploid and polyploid lycophytes. Comparison of the I. sinensis genome with those of other species representing the evolutionary lineages of green plants revealed the inherited genetic tools for transcriptional regulation and most phytohormones in I. sinensis. The presence and absence of key genes related to development and stress responses provides insights into environmental adaption of lycophytes. Conclusions The high-quality reference genome and genomic analysis presented in this study are crucial for future genetic research and the environmental studies of not only I. sinensis but also other lycophytes.
DOI: 10.26036/cnp0004712
title: Sinibotia reevesae genome

description: This project includes the genome assembly, raw sequecing reads and gene annotation.
DOI: 10.6084/m9.figshare.22225894
title: Changes in antioxidant status and DNA repair capacity are corroborated with molecular alterations in malignant thyroid tissue of patients with papillary thyroid cancer

description: Variant Calling Format (VCF) files generated from whole-exome sequencing analysis.
DOI: 10.6084/m9.figshare.22225894.v1
title: Changes in antioxidant status and DNA repair capacity are corroborated with molecular alterations in malignant thyroid tissue of patients with papillary thyroid cancer

description: Variant Calling Format (VCF) files generated from whole-exome sequencing analysis.
DOI: 10.6084/m9.figshare.24024243
title: Cross-species comparative analysis - marker genes used in GSVA

description: Marker gene lists used in GSVA
DOI: 10.6084/m9.figshare.24024243.v1
title: Cross-species comparative analysis - marker genes used in GSVA

description: Marker gene lists used in GSVA
DOI: 10.26188/24024234.v1
title: Source data for <b>Poor sleep and shift work associate with increased blood pressure and inflammation in UK Biobank</b>

description: The file contains source data for figures in the paper "<b>Poor sleep and shift work associate with increased blood pressure and inflammation in UK Biobank</b>" in Press in Nature communications.
DOI: 10.5281/zenodo.8278329
title: Revisit of 77 Clusters Candidates with Multiple Main Sequences using Gaia DR3

description: The data of 77 clusters with eMSTO.
DOI: 10.5281/zenodo.8278328
title: Revisit of 77 Clusters Candidates with Multiple Main Sequences using Gaia DR3

description: The data of 77 clusters with eMSTO.
DOI: 10.7936/6rxs-103622
title: Impacts of a participatory action project: how reducing crop raiding has implications for human health [dataset]

description: Human-wildlife interactions include wild animals foraging on agricultural crops, often called crop raiding. Crop raiding can result in disease transmission, poor nutrition, stress, and loss of income. Crop raiding also affects conservation because retaliatory events can result in wildlife being harmed. Around Kibale National Park, Uganda, a community action project implemented mitigation strategies that reduced crop raiding. We surveyed 95 of 106 (90%) project participant households to determine if participants perceived their health to have changed due to the project. We conducted open-ended, oral surveys during July and August 2018. Most participants said their overall health had improved (80%) and that their diet (83%), stress (82%), sleep (82%), and exposure to zoonotic diseases (64%) improved. Other benefits included income to pay medical bills and school fees. No participant reported negative effects. We found evidence that reducing crop raiding had positive implications for people’s health and income stability.
DOI: 10.6084/m9.figshare.23988984
title: Brackish archaeal genome set

description: This dataset include metagenome-assembled genomes (MAGs) of <i>Poseidoniales</i> were reconstructed from 282 metagenomes of global estuarine, enclosed sea and coastal environments, and also together with the reference archaeal and bacteria genomes.
DOI: 10.6084/m9.figshare.23988984.v1
title: Brackish archaeal genome set

description: This dataset include metagenome-assembled genomes (MAGs) of <i>Poseidoniales</i> were reconstructed from 282 metagenomes of global estuarine, enclosed sea and coastal environments, and also together with the reference archaeal and bacteria genomes.
DOI: 10.21227/9kk1-ed67
title: Infrared Thermal Imaging and Statistical Analysis for Plant Stress Detection and Phenotyping

description:  Although California is the largest agricultural-producing state in America, frequent drought conditions severely impact the amount of product produced each year. High-value crops, such as avocados (Persea americana), are extremely sensitive to water deficits. These drought conditions are also the reason why many plants are endangered. Even though plant stress is a critical factor impacting a plant’s health, current plant stress measurements involve complicated measurement systems that are both destructive to the plant and inconvenient to use for farmers and plant preservation groups. There is an urgent need for a nondestructive and convenient technique for plant drought stress detection. Three series of experiments were designed and conducted to verify the practicality of using infrared thermal imaging technique to detect plant drought stress. The experiments were conducted on three different plants: Avocado (Persea americana), a drought sensitive plant; Shaw’s Agave (Agave shawii), an endangered plant; and the Toyon (Heteromeles arbutifolia), a drought tolerant plant, under different weather and irrigating conditions. The infrared thermal images were processed, and plant surface temperatures were statistically analyzed on three different plants, which demonstrated a strong correlation between surface temperatures and plant health condition and showed the feasibility of using infrared thermal imaging technique as an efficient and convenient tool for early plant drought stress detection. Based on this infrared thermal imaging technique, a model is currently being developed to automatically statistically analyze and accurately predict early drought stress in plants.
DOI: 10.6084/m9.figshare.24024294.v1
title: SARS-CoV-2感染在动物中的全球分布代码

description: 越来越多的动物感染SARS-CoV-2的报告引起了人们对该病毒潜在天然宿主的担忧。然而，我们对动物感染风险的全球分布和驱动因素的了解仍然有限。为了解决这一知识差距，我们从各种来源进行了广泛的数据挖掘，并开发了基于机器学习的模型来预测全球动物感染的可能性。
DOI: 10.6084/m9.figshare.24024342
title: chestionar.xlsx

description: <i><b>Nr.</b></i><i><b>Întrebare</b></i><i><b>Tip răspuns</b></i><i>1.</i>Consider că am înțeles conceptul de vector caracteristic/de frecvențe.Linear scale (1 -&gt; 5)<i>2.</i>Înțeleg diferențele dintre vector caracteristic și vector de frecvențe.Linear scale (1 -&gt; 5)<i>3.</i>Mă descurc să implementez o problemă ce implică vectori în limbajul C++.Linear scale (1 -&gt; 5)<i>4.</i>Înțeleg algoritmul de construire a unui vector caracteristic/de frecvențe.Linear scale (1 -&gt; 5)<i>5.</i>Cea mai dificilă etapă mi s-a părut:Checkboxes<i>6.</i>Dificultăți pe care le-am întâmpinat la vector caracteristic și vector de frecvențe:Răspuns lung<i>7.</i>Ce m-ar ajuta să înțeleg mai bine vector caracteristic și vector de frecvențe:Răspuns lung<i>8.</i>Consider că am înțeles vector caracteristic și vector de frecvențeMultiple choice grid<i>9.</i>Menționați 2-3 diferențe între un vector caracteristic și un vector de frecvențe:Răspuns lung<i>10.</i>Care crezi că sunt cele mai importante concepte referitor la vector caracteristic și vector de frecvențe?Răspuns lung<i>11.</i>Care consideri că este utilitatea vectorilor caracteristici și vectorilor de frecvențe?Răspuns lung<i>12.</i>Consider că nivelul meu la informatică este unul:Linear scale (1 -&gt; 5)<i>13.</i>Media mea la disciplina informatică este:Linear scale (1 -&gt; 10)
DOI: 10.6084/m9.figshare.24024342.v1
title: chestionar.xlsx

description: <i><b>Nr.</b></i><i><b>Întrebare</b></i><i><b>Tip răspuns</b></i><i>1.</i>Consider că am înțeles conceptul de vector caracteristic/de frecvențe.Linear scale (1 -&gt; 5)<i>2.</i>Înțeleg diferențele dintre vector caracteristic și vector de frecvențe.Linear scale (1 -&gt; 5)<i>3.</i>Mă descurc să implementez o problemă ce implică vectori în limbajul C++.Linear scale (1 -&gt; 5)<i>4.</i>Înțeleg algoritmul de construire a unui vector caracteristic/de frecvențe.Linear scale (1 -&gt; 5)<i>5.</i>Cea mai dificilă etapă mi s-a părut:Checkboxes<i>6.</i>Dificultăți pe care le-am întâmpinat la vector caracteristic și vector de frecvențe:Răspuns lung<i>7.</i>Ce m-ar ajuta să înțeleg mai bine vector caracteristic și vector de frecvențe:Răspuns lung<i>8.</i>Consider că am înțeles vector caracteristic și vector de frecvențeMultiple choice grid<i>9.</i>Menționați 2-3 diferențe între un vector caracteristic și un vector de frecvențe:Răspuns lung<i>10.</i>Care crezi că sunt cele mai importante concepte referitor la vector caracteristic și vector de frecvențe?Răspuns lung<i>11.</i>Care consideri că este utilitatea vectorilor caracteristici și vectorilor de frecvențe?Răspuns lung<i>12.</i>Consider că nivelul meu la informatică este unul:Linear scale (1 -&gt; 5)<i>13.</i>Media mea la disciplina informatică este:Linear scale (1 -&gt; 10)
DOI: 10.6084/m9.figshare.24024294
title: The code of mapping the global risk of SARS-CoV-2 infection in animals

description: Increasing reports of SARS-CoV-2 infections in animals have raised concerns about potential natural reservoirs for the virus. However, our understanding of the global distribution and drivers of animal infection risk remains limited. To address this knowledge gap, we conducted an extensive data mining from various sources and developed machine learning-based models to project the global probability of animal infection.
DOI: 10.6084/m9.figshare.24024294.v2
title: The code of the global distribution of SARS-CoV-2 infections in animals

description: Increasing reports of SARS-CoV-2 infections in animals have raised concerns about potential natural reservoirs for the virus. However, our understanding of the global distribution and drivers of animal infection risk remains limited. To address this knowledge gap, we conducted an extensive data mining from various sources and developed machine learning-based models to project the global probability of animal infection.
DOI: 10.57841/casdc.0001933
title: C2H2/Ar流量比对a-C:H涂层结构及摩擦学性能的影响
DOI: 10.6084/m9.figshare.24024339
title: <b>An Empirical Study</b><b> on Results-Blind Review for Weakening Publication Bias</b>

description: # Title of Dataset Data of Results-Blind Review (RBR) and Transparent Peer Review (TPR)## Description of the data and file structure Results-Blind Review (RBR)---&gt; Experiment Group -----&gt; Experiment Group ( 2 folders: "Link of Review Reports for Experiment Group" and "Review Reports of Experiment Group"; 1 file: "Review Reports of Experiment Group-integration.txt" ) Transparent Peer Review (TPR)---&gt; Control Group -----&gt; Control Group ( 2 folders: "Link of Review Reports for Control Group" and "Review Reports of Control Group"; 1 file: "Review Reports of Control Group-integration.txt" ) <br>
DOI: 10.6084/m9.figshare.24024339.v1
title: <b>An Empirical Study</b><b> on Results-Blind Review for Weakening Publication Bias</b>

description: # Title of Dataset Data of Results-Blind Review (RBR) and Transparent Peer Review (TPR)## Description of the data and file structure Results-Blind Review (RBR)---&gt; Experiment Group -----&gt; Experiment Group ( 2 folders: "Link of Review Reports for Experiment Group" and "Review Reports of Experiment Group"; 1 file: "Review Reports of Experiment Group-integration.txt" ) Transparent Peer Review (TPR)---&gt; Control Group -----&gt; Control Group ( 2 folders: "Link of Review Reports for Control Group" and "Review Reports of Control Group"; 1 file: "Review Reports of Control Group-integration.txt" ) <br>
DOI: 10.5281/zenodo.8025018
title: The second data release from the European Pulsar Timing Array II. Customised pulsar noise models for spatially correlated gravitational waves

description: Aims: The nanohertz gravitational wave background (GWB) is expected to be an aggregate signal of an ensemble of gravitational waves emitted predominantly by a large population of coalescing supermassive black hole binaries in the centres of merging galaxies. Pulsar tiNanohertz ming arrays (PTAs), which are ensembles of extremely stable pulsars at approximately kiloparsec distances precisely monitored for decades, are the most precise experiments capable of detecting this background. However, the subtle imprints that the GWB induces on pulsar timing data are obscured by many sources of noise that occur on various timescales. These must be carefully modelled and mitigated to increase the sensitivity to the background signal. Methods: In this paper, we present a novel technique to estimate the optimal number of frequency coefficients for modelling achromatic and chromatic noise, while selecting the preferred set of noise models to use for each pulsar. We also incorporated a new model to fit for scattering variations in the Bayesian pulsar timing package temponest. These customised noise models enable a more robust characterisation of single-pulsar noise. We developed a software package based on tempo2 to create realistic simulations of European Pulsar Timing Array (EPTA) datasets that allowed us to test the efficacy of our noise modelling algorithms. Results: Using these techniques, we present an in-depth analysis of the noise properties of 25 millisecond pulsars (MSPs) that form the second data release (DR2) of the EPTA and investigate the effect of incorporating low-frequency data from the Indian Pulsar Timing Array collaboration for a common sample of ten MSPs. We used two packages, enterprise and temponest, to estimate our noise models and compare them with those reported using EPTA DR1. We find that, while in some pulsars we can successfully disentangle chromatic from achromatic noise owing to the wider frequency coverage in DR2, in others the noise models evolve in a much more complicated way. We also find evidence of long-term scattering variations in PSR J1600-3053. Through our simulations, we identify intrinsic biases in our current noise analysis techniques and discuss their effect on GWB searches. The analysis and results discussed in this article directly help to improve the sensitivity to the GWB signal and they are already being used as part of global PTA efforts.
DOI: 10.57841/casdc.0001934
title: 改性石墨烯增强聚四氟乙烯摩擦学性能的分子模拟研究
DOI: 10.4121/b9260a5e-8a11-4efd-822a-e244e0f7798b
title: Sample simulation files underlying the publication: Computation of Electrical Conductivities of Aqueous Electrolyte Solutions: Two Surfaces, One Property

description: Sample simulations files used for publication titled "Computation of Electrical Conductivities of Aqueous Electrolyte Solutions: Two Surfaces, One Property". In this work, the electrical conductivity of NaCl (aq) and KCl (aq) are calculated using molecular simulations with scaled charge force fields. The in- and output files in this dataset are applicable for the data points indicated as "Delft" in the main manuscript and are computed using Lammps (version June 2018) with the OCTP plugin. For more detailed information, please read the README files for more information and refer to the main manuscript for more details: https://pubs.acs.org/doi/10.1021/acs.jctc.3c00562
DOI: 10.4121/b9260a5e-8a11-4efd-822a-e244e0f7798b.v1
title: Sample simulation files underlying the publication: Computation of Electrical Conductivities of Aqueous Electrolyte Solutions: Two Surfaces, One Property

description: Sample simulations files used for publication titled "Computation of Electrical Conductivities of Aqueous Electrolyte Solutions: Two Surfaces, One Property". In this work, the electrical conductivity of NaCl (aq) and KCl (aq) are calculated using molecular simulations with scaled charge force fields. The in- and output files in this dataset are applicable for the data points indicated as "Delft" in the main manuscript and are computed using Lammps (version June 2018) with the OCTP plugin. For more detailed information, please read the README files for more information and refer to the main manuscript for more details: https://pubs.acs.org/doi/10.1021/acs.jctc.3c00562