cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/bzpzzw9tdc
title: Climate-Change Refugia for the Bubblegum Coral Paragorgia arborea in the Northwest Atlantic

description: The large, habitat-forming bubblegum coral, Paragorgia arborea, is a vulnerable marine ecosystem indicator with an antitropical distribution. Dense aggregations of the species have been protected from bottom-contact fishing in the Scotian Shelf bioregion off Nova Scotia, Canada in the northwest Atlantic Ocean. Recently, basin-scale habitat suitability ensemble modeling has projected an alarming loss of 99% of suitable habitat for this species across the North Atlantic by 2100. Here, a regional reassessment of the predicted distribution of this species in the bioregion, using both machine learning (random forest) and generalized additive model (GAM) frameworks, including projection to 2046−2065, was undertaken. Extrapolation diagnostics were applied to determine the degree to which the models projected into novel covariate space (i.e., extrapolation) in order to avoid erroneous inferences. The best predictors of the species’ distribution were a suite of temporally-invariant terrain variables that identified suitable habitat along the upper continental slope. Additional predictors, projected to vary with future ocean climatologies, identified areas of the upper slope in the eastern portion of the study area that will remain within suitable ranges for P. arborea at least through to the mid-century. Additionally, 3-D Lagrangian particle tracking simulations indicated potential for both connectivity among known occurrence sites and existing protected areas, and for colonization of unsurveyed areas predicted to have suitable habitat, from locations of known occurrence. These results showed that extirpation of this iconic species from the Scotian Shelf bioregion is unlikely over the next decades. Potential climate refugia were identified and results presented in the context of protected area network design properties of representativity, connectivity, adequacy, viability and resilience.

Here we provide the locations for presence and absence records for P. arborea (response data) and the interpolated environmental predictor variables used in present day and future species distribution models. Predicted surfaces from random forest (RF) and generalized additive models (GAM) are provided for present day and projected (RCP4.5 and RCP8.5 2045-2065) time frames. Outputs after applying extrapolation diagnostic tools (calculated using the R package dsmextra) are provided for each model. Climate change refugia for this species under the RCP4.5 2045-2065 projections are found in the Fig8 folder showing analogue conditions. Explanations for the surfaces can be found in Wang, Murillo & Kenchington (2022) and in the associated supplementary files. Links to both are provided (see related links). 

Reference:
Wang S, Murillo FJ and Kenchington E (2022) Climate-Change Refugia for the Bubblegum Coral Paragorgia Arborea in the Northwest Atlantic. Front. Mar. Sci. 9:863693. doi: 10.3389/fmars.2022.863693
DOI: 10.17632/v3fn547spz
title: Yamada et al., Cell Reports (2018) "Light control of the Tet-gene expression system in mammalian cells"

description: Raw and analyzed data, and custom-written codes of Yamada et al., Cell Reports (2018) "Light control of the Tet-gene expression system in mammalian cells".
DOI: 10.6084/m9.figshare.28376156.v1
title: Bangla silent speech dataset.zip

description: Collected dataset of 6,000 videos from ten subjects uttering ten common Bengali words.FundingMuhammad E. H. Chowdhury, Ph.D. (UK), SMIEEE<br><br>If you find this work or code helpful in your research, please cite:**BibTeX Format**<br>@article{sumon2024deep, title={Deep Learning for Bangla Silent Speech Recognition: A Neck-Mounted Device Approach}, author={Md. Shaheenur Islam Sumon and Muttakee Bin Ali and Syed Mahfuzur Rahman and M. Murugappan and Muhammad E. H. Chowdhury}, year={2025}, note={Under review} }}<br><br>
DOI: 10.17632/5cbv57fckp
title: PressureCap Data

description: Data on the design of an ingestible motility capsule, along with signals measured during in-vitro and in-vivo testing of the device.
DOI: 10.17632/dc7p5gjmjf
title: JADAMILU: a software code for computing selected eigenvalues of large sparse symmetric matrices

description: Abstract A new software code for computing selected eigenvalues and associated eigenvectors of a real symmetric matrix is described. The eigenvalues are either the smallest or those closest to some specified target, which may be in the interior of the spectrum. The underlying algorithm combines the Jacobi–Davidson method with efficient multilevel incomplete LU (ILU) preconditioning. Key features are modest memory requirements and robust convergence to accurate solutions. Parameters needed for incomplete ... Title of program: JADAMILU Catalogue Id: ADZT_v1_0 Nature of Problem Any physical problem requiring the computation of a few eigenvalues of a symmetric matrix. Versions of this program held in the CPC repository in Mendeley Data ADZT_v1_0; JADAMILU; 10.1016/j.cpc.2007.08.004 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/r77x7mvxvz
title: Two isotopically distinct populations of refractory inclusions in the EHa3 chondrite Sahara 97072 – Significance for understanding the evolution of the CAI-formation region

description: Isotopic investigations of refractory inclusions within the EHa3 chondrite Sahara 97072
DOI: 10.6084/m9.figshare.5745756.v1
title: Cross-ecosystem effects of a large terrestrial herbivore on stream ecosystem functioning

description: Large terrestrial consumers have direct and indirect effects on forest ecosystem function, but few studies have investigated the impacts of terrestrial consumers on freshwater ecosystems. In the Cape Breton Highlands of Nova Scotia, browsing by hyper-abundant moose has transformed boreal forest into grasslands. We investigated the potential for cross-ecosystem effects of hyper-abundant moose on small boreal stream ecosystem structure and function. We predicted that watersheds with higher levels of moose-mediated grasslands in their sub-basins would have higher stream temperatures, total nitrogen, electrical conductivity, periphyton biomass, and macroinvertebrate abundances. We found evidence of higher stream temperature range, total nitrogen, electrical conductivity and relative abundance of predatory inverts in streams with high moose impacts in their watersheds. However, we found little evidence of moose impacts on average daily maximum, average, maximum and minimum stream temperatures, periphyton biomass and the abundance of shredders, filterers, gatherers, and grazers. This empirical study fills a key gap in our understanding of meta-ecosystem ecology by providing insight into the effects of large terrestrial consumers across ecosystem boundaries with potential implications for landscape-scale management of hyper-abundant ungulates.
DOI: 10.6084/m9.figshare.5123506.v1
title: Supplementary Material for: Protective Actions of Globular and Full-Length Adiponectin on Human Endothelial Cells: Novel Insights into Adiponectin-Induced Angiogenesis

description: <b><i>Background/Aims:</i></b> Adiponectin levels are decreased in diabetes and atherosclerosis. Coexisting hyperglycaemia and systemic inflammation predisposes to dysregulated angiogenesis and vascular disease. We investigated the effect of globular adiponectin (gAd) and full-length adiponectin (fAd) on angiogenesis and pro-angiogenic molecules, i.e. matrix metalloproteinase (MMP)-2, MMP-9 and vascular endothelial growth factor (VEGF), in human microvascular endothelial cells (HMEC-1). <b><i>Methods:</i></b> Angiogenesis was assessed by studying capillary tube formation in HMEC-1 on growth factor-reduced Matrigel. Endothelial cell migration assay was performed in a modified Boyden chamber. <b><i>Results:</i></b> Endothelial cell proliferation, in vitro migration and angiogenesis were significantly increased by gAd (mediated by AdipoR1, AMPK-Akt pathways), and gAd significantly increased MMP-2, MMP-9 and VEGF expression levels. The effect of gAd on VEGF appears to be mediated by AdipoR1, whilst the effect of gAd on MMP-2 and MMP-9 appears to be mediated by AdipoR1 and AdipoR2. Only endothelial cell proliferation was significantly increased by fAd in human microvascular endothelial cells and appears to be mediated by AdipoR2. No significant effects on MMP-2, MMP-9 and VEGF were observed. Importantly, gAd decreased glucose and C-reactive protein-induced angiogenesis with a concomitant reduction in MMP-2, MMP-9 and VEGF in HMEC-1 cells. <b><i>Conclusion:</i></b> We report novel insights into the mechanisms of adiponectin on angiogenesis.
DOI: 10.6084/m9.figshare.3515321.v1
title: Appendix A. Characteristics of the 12 plant–pollinators webs analyzed.

description: Characteristics of the 12 plant–pollinators webs analyzed.
DOI: 10.17632/cp8g8ncjvy
title: Public Sector Digital Transformation Impact on Rural Multidimensional Poverty Alleviation (Living Standard Dimension)

description: This is the dataset for my article "The Impact of Public Sector Digital Transformation on Rural Multidimensional Poverty Alleviation (Living Standards Dimension): Evidence from Indonesia". All raw data sourced from Indonesia Village Potential Data (Potensi Desa - PODES) which officially reported by Indonesian Central Bureau of Statistics (Badan Pusat Statistik - BPS) from year 2014, 2018 and 2021.
DOI: 10.17632/fvmy5mb7hk
title: Tidal wetland historical change by habitat class, Oregon coast, USA from 1800s to 2019

description: How have tidal wetlands on the Oregon coast, USA changed over the past 150-200 years? We mapped and quantified a striking and previously unrecognized coastwide alteration: the near-eradication of once-prevalent tidal forested wetlands (TFWs). We argue that this finding calls for a paradigm shift in management of Oregon’s outer coast estuaries. By combining elevation-based estuary maps and historical (1800s) vegetation data, we found that TFWs made up a majority (54%) of the coast's historical tidal wetland area, while emergent tidal wetlands ("tidal marsh") occupied a smaller area (42%). However, diking and vegetation conversion resulted in the loss of 95% of historical TFW, compared to 59% of historical tidal marsh. Tidal marsh loss was offset by a gain of 1770 ha of tidal marsh through progradation, but no similar gain occurred for TFW. The extreme loss of TFW has most likely reduced the provision of key TFW ecosystem services, such as carbon sequestration and complex, productive salmonid habitat. Restoring TFW is a high priority and can help re-establish these habitats and ecosystem services, benefiting coastal economies and ecosystems. Further research is needed to identify restoration sites with environmental conditions suitable for the establishment and long-term persistence of TFW. Identification and prioritization of potential restoration sites should account for climate change and emphasize the availability of landward migration areas and other landscape setting factors that could affect long-term persistence of TFW.
DOI: 10.6084/m9.figshare.3512633.v1
title: Appendix A. A list of macroinvertebrate taxa collected in the project.

description: A list of macroinvertebrate taxa collected in the project.
DOI: 10.17632/26j6bh8bmz
title: Endogenous Human Capital and Market Structure in a Monetary Schumpeterian Model

description: The replication files are used to replicate the empirical and quantitative results in the paper "Endogenous Human Capital and Market Structure in a Monetary Schumpeterian Model".
DOI: 10.17632/sj5kbg68cd
title: All PCR primers used in this study.

description: All PCR primers used in this study.
DOI: 10.17632/w7ysnbyzns
title: Laser-directed energy deposition of high-performance Ti2AlNb alloys via particle size modulation

description: The original data of the graphics in the paper
DOI: 10.6084/m9.figshare.19345136.v1
title: Supplementary Material for: Identification of Centromere-Specific Repeats in the Zebra Finch Genome

description: Tandem repetitive sequences represent a significant part of many genomes but remain poorly characterized due to various methodological difficulties. Here, we describe the tandem repeat composition in the genome of zebra finch, <i>Taeniopygia guttata</i>, a species that has long served as an animal model, primarily in neurobiology and comparative genomics. Using available genome sequencing raw read datasets, we bioinformatically reconstructed consensus sequences of several tandem repeats and proved that the most abundant ones, <i>Tgut191A</i> and <i>Tgut716A</i>, are centromere-associated in chromosomes. Each centromeric region can have a different number of copies of each repeat, with <i>Tgut716A</i> enrichment in almost all microchromosomes and sex chromosomes. Sequences similar to <i>Tgut191A</i> and <i>Tgut716A</i> found in other Estrildidae and Viduidae species can be considered as candidate centromeric sequences, but this requires further cytogenetic verification.
DOI: 10.6084/m9.figshare.5501248.v1
title: Arthropods dataset from different genetically modified maize events and associated controls

description: The food-web graph index data contains the number of nodes (species) and the number of edges (trophic relations between species) for each maize entry. Values in degree represents the number of trophic links toward the species in food web (number of other species feeding with this species). Values out degree represents the number of trophic links from the species (number of other species eaten by the species). K indexes or keystone index are quantitative rank of species by their topological importance. As the K index increase the species importance are higher in the functioning of the food-web.<br>Sample 1_Pitfall Traps_2007-2008 contains arthropods data collected with pitfall traps in different maize development stages. (eight leaves stage (V8), twelve leaves stage (V12), vegetative stage, tasseling (VT) and reproductive stage, milk (R3)). <br><br>Sample 2_Yellow Traps_2007-2008 contains arthropods data collected with yellow traps in different maize development stages. (eight leaves stage (V8), twelve leaves stage (V12), vegetative stage, tasseling (VT) and reproductive stage, milk (R3)). <br><br>Sample 3_Plant Assessment_2007-2008 contains arthropods data assessed from plants in different maize development stages. (eight leaves stage (V8), twelve leaves stage (V12), vegetative stage, tasseling (VT) and reproductive stage, milk (R3)). <br><br>Sample 4_Weed coverage_2007-2008 contains weed assessment in different maize development stages. (eight leaves stage (V8), twelve leaves stage (V12), vegetative stage, tasseling (VT) and reproductive stage, milk (R3)). <br>
DOI: 10.17632/jgvs9cxmwf
title: The spatial–temporal evolution of Neotethyan subduction in central to southeast Iran: Constraints from geochemistry, zircon U–Pb–Hf, and Sr–Nd–Pb isotopes

description: Appendix A
DOI: 10.17632/tznrh99wmm
title: Suitable model for estimating the stem age of Populus alba L. using its diameter

description: The article analyzes the suitable model for estimating the stem age of Populus alba using its diameter. The results show that the Richards model was the most suitable for estimating the age of P. alba stems. The nonlinear regression curve between tree rings and stem diameter fitted with the Richards model was suitable for estimating the stem age of P. alba, avoiding the need to cut down trees and protecting forests. The fitted nonlinear regression curves of tree rings and stem diameter with the Clare and Sloboda models were close to the measured data and could be also used to estimate tree age.
DOI: 10.11583/dtu.16837721.v1
title: NMC Li-ion Battery Cathode Energies and Charge Densities

description: This dataset contains charge densities for NMC (Ni, Mn and Co) 2x2x1 supercell (12 transition metal atoms and 12 Li/vacancy site) with varying levels of Li content. For each structure we first randomly sample the number of Mn, Ni and Co atoms given that the total number of transition metal atoms is 12 and then randomly assign them to the transition metal positions of the lattice. Similarly the number of vacancies is uniformly sampled between 0 and 12 and vacancies are assigned to the Li site. The generated configurations are then relaxed in two steps: First we relax the atom positions with fixed cell parameters and then we allow both positions and cell parameters to relax. We keep only the electron density (CHGCAR) file after the last cell relaxation step. The atoms are relaxed until forces on each atom are lower than 0.01 eV/Å. <br> The final relaxation is done with the following VASP settings through the Atomic Simulation Environment: xc='PBE', gga='PS', istart=1, algo='Normal', icharg=1, nelm=1800, ispin=1, nelmdl=6, isym=0, lcorr=True, potim=0.1, nelmin=5, kpts=[3,3,1], ismear=0, ediff=0.1E-03, ediffg=-0.05, sigma=0.1, nsw=200, isif=3, ibrion=2, ldiag=True, lreal='Auto', lwave=False, lcharg=True, prec='Normal' <br> The resulting CHGCAR files have been compressed with lz4 compression and packed in non-compressed tar archives with up to 1000 structures in each. <br> The datasplits json files contain the indices (0-index) of the train, validation and test sets used in the paper "Graph neural networks for fast electron density estimation of molecules, liquids, and solids"
DOI: 10.17632/cbcxjsrhvk
title: Factors Affecting the Return on Education in Jordan 

description: questioner data
DOI: 10.17632/xz3mjncb95
title: Mining normative Frameworks in Latinoamerica

description: The section you provided focuses on the historical development of mining regulations and policies across several countries, including Chile, Argentina, Peru, Colombia, Ecuador, and Brazil. It describes property rights, fiscal frameworks, and socio-environmental measures, highlighting key legislative milestones and constitutional changes. These regulations govern resource ownership, investment conditions, environmental protection, and the rights of indigenous communities, showing a balance between promoting economic activities and ensuring environmental and social safeguards.
DOI: 10.6084/m9.figshare.7869290.v2
title: README-Description_of_files_Coho.docx

description: READ ME file. Describes data and Matlab code to replicate results in 2019 paper by Lewis, Dundas, Kling, Lew, and Hacker on willingness-to-pay for restoring Oregon Coast Coho Salmon
DOI: 10.17632/b9vptj5cb7
title: Сold nuclear fusion

description: The processes occurring during a thunderstorm, namely the formation of linear lightning, are investigated. The processes occurring in clouds are considered. The physics of processes in toroidal vortices is described. Further studies confirmed the chain of electrochemical reactions and also the chain of nuclear reactions. The mechanism of beta decay and the appearance of high-energy protons in linear lightning is investigated. The conditions for the upcoming experiment are set.
DOI: 10.17632/rhjk8cx8tc
title: Annex 4. Miscel·lània il·lustrada de resultats aplegats i no o només parcialment recollits als catàlegs

description: Miscel·lània il·lustrada de resultats aplegats i no o només parcialment recollits als
catàlegs
DOI: 10.6084/m9.figshare.14123351.v1
title: Supplementary Material for: Management of Cardiovascular Disease in Kidney Disease Study: Rationale and Design

description: <b><i>Introduction:</i></b> Atherosclerosis, inflammation, and vascular stiffness are prominent interrelated risk factors contributing to the high incidence of cardiovascular disease (CVD) in patients with CKD. Conventional CVD management strategies in CKD largely target atherosclerotic CVD and have had a limited impact on the cardiovascular mortality in this population. Multiple in vivo and in vitro studies and epidemiological evidence from the rheumatologic cohorts have shown that low-dose hydroxychloroquine has beneficial effects on inflammation, endothelial function, insulin sensitivity, and metabolic syndrome. Our recent proof-of-concept animal study showed that hydroxychloroquine has marked protection against atherosclerosis and vascular stiffness. We hypothesize that hydroxychloroquine has the potential to provide significant cardiovascular benefits in patients with CKD. <b><i>Methods:</i></b> The Management of Cardiovascular disease in Kidney disease study (NCT 03636152) is a phase 2B, randomized, double-blind, placebo-controlled trial evaluating the effects of low-dose hydroxychloroquine therapy on the parameters of atherosclerosis, inflammation, and vascular stiffness in patients with CKD. The study plans to enroll 100 CKD patients estimated to be at high cardiovascular risk by a combination of low estimated glomerular filtration rate and albuminuria and treat them for 18 months with hydroxychloroquine or placebo in 1:1 allocation. <b><i>Results:</i></b> The study will assess the change in the total carotid plaque volume as measured by serial noncontrast carotid MRI as the primary outcome and the serial changes in plasma inflammation markers, vascular stiffness, renal function, and the composition characteristics of the carotid plaque as secondary outcome measures. <b><i>Discussion/Conclusion:</i></b> The results of this trial will provide the proof-of-applicability for hydroxychloroquine in the CVD in CKD. If positive, this trial should lead to phase-3 trials with clinical end points for this potentially transformative, novel, and inexpensive therapy for CVD in CKD.
DOI: 10.17632/4546777hct
title: Perceptions, practices, and predictors of traditional, complementary, and integrative medicine among healthcare professionals in Gondar City, northwestern Ethiopia

description: The literature exploring the views and experiences of healthcare professionals toward traditional complementary and integrative medicine (TCIM) in Ethiopia is limited. In the present study, we have explored the views and experiences of healthcare professionals toward TCIM and associated factors among healthcare professionals in Gondar City, northwestern Ethiopia. A total of 348 healthcare professionals were included in the study. Our finding showed that the majority of healthcare professionals in the study had positive views on the usefulness of TCIM and had used it in their families. This dataset contains data collection tool that we have used for our survey and the raw data in Excell sheet.
DOI: 10.17632/9sfknd9yy6
title: Data for: Lateral inner environment changes and effects on emitter clogging risk for different irrigation times

description: some treated dataset for the research.
DOI: 10.17632/mpyp94m7j9
title: Supplemental material for manuscript entitled: Changes in circulating metabolites during weight loss and weight loss maintenance in relation to changes in cardiometabolic risk factors: The SATIN study

description: Supplemental material for manuscript entitled: Changes in circulating metabolites during weight loss and weight loss maintenance in relation to changes in cardiometabolic risk factors: The SATIN study
DOI: 10.17632/bd8ypz8gwx
title: Variables used for talent identification in youth soccer: a systematic review

description: A systematic literature search was carried out on PubMed (n = 185), Web of Science (n = 481), and ScienceDirect (n = 133) databases in December 2022 by two authors (VOS and CPF). The search strategy combined the keywords “talent identification” and “soccer” or “football”.  The search terms included football or soccer combined with talent identification following the PICOS principles. The author responsible for the systematic search was not blinded to journal names or manuscript authors.
DOI: 10.17632/d5hkw23dk9
title: Country-specific sectoral emission inventory updates to 2018

description: Country-specific sectoral emission inventory of  44 regions and 56 sectors updates to 2018
DOI: 10.6084/m9.figshare.9758747.v1
title: Needle scan and needle area calculation for larch tree in Arctic taiga-tundra boundary of northeastern Siberia

description: For each individual larch tree, needles on old year stems were scanned for calculation of total needle area by using Image J.<br>