cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7644236
title: Alphafold2 models of 47G4 (Hu19) scFv dimers and of VLVL dimers

description: <strong>Alphafold2 models of 47G4 (Hu19) scFv dimers show a variety of swapped VH-VL structures.</strong> Alphafold2 dimers models of scFvs formed from VH and VL domains tend to swap to form diabodies with long linkers as for short linkers. The 47G4 scFv used in this study uses a VL-to-VH scFv construct with a long linker (see sequence in Figure 1) See Supplement files for: The 5 best Alphafold2 models of a predicted 47G4 (Hu19) scFv dimer, using the sequence in Figure 1. In PDB format. The 5 models are ranked by AF2 in files: <strong>ranked_0...4.pdb </strong> The 5 models can be compared by superimposition of the VL domain of chain A: in iCn3D using an iCn3D PNG image file. To see the models and analyze them in 3D, invoke iCn3D with the link: https://www.ncbi.nlm.nih.gov/Structure/icn3d/full.html ; open “iCn3D PNG image file” using the<strong> file:</strong> <strong>5models_Hu19_scFv_AF2_icn3d_loadable.png</strong> <strong>Alphafold2 models for 47G4 (Hu19) VL-VL dimers</strong> In PDB format. The 25 models are ranked by AF2 in files: <strong>Hu19-VLVL-AF2-ranked_0…24.pdb </strong> Only one out of 25 models offers an inverted interface but offers lower confidence. All other present the canonical interface. <strong>List of PDB structures containing VL-VL quaternary interfaces (PDB accessed on 10/11/2021)</strong> See file: <strong>PDB-</strong><strong>Igs-VLVL-asu+bu-with-over-10contacts.xls</strong> The file represents PDB structures that contain contacting VL domains with more than 10 arbitrary contacts in either the first biological Unit (BU) or asymmetric unit (ASU). Both BU and ASU are used as both may contain valid dimers, as in the the inverted VLVL dimer structure (7JO8) Some <strong>iCn3D links</strong> are provided in the excel file to look and analyze a number of structures. Some links compare 7JO8 to 1REI, or other VLVL parallel vs antiparallel dimer such as 1LVE vs 5LVE. Where no link is specified, PDBids can be directly loaded in iCn3D using the link https://www.ncbi.nlm.nih.gov/Structure/icn3d/full.html
DOI: 10.25345/c5x921v1v
title: MassIVE MSV000091660 - Characterization of Ultra Violet or Interstrand Crosslink DNA damage induced UVSSA protein-protein interactions via Co-Immunoprecipitation.
title: The repair protein UVSSA is recruited to transcribing RNA polymerase Pol II upon stalling at transcription blocking lesions where it effects transcription coupled repair and removal of the damaged DNA segment. While the majority of research into UVSSA function has been done in the context of Ultra Violet (UV) light induced lesions, there is also evidence that transcription coupled repair proteins are required for repair of DNA interstrand crosslinks (ICLs), a highly genotoxic lesion induced by chemotherapeutic drugs. Here, we analyzed the UVSSA protein-protein interactions triggered by either UV or ICL damage. We performed Co-immunoprecipitation (CoIP) of chromatin bound FLAG tagged UVSSA in human cell lines exposed to either UV light, treatment with the ICL inducing drug SJG136, or mock treatment. Upon SJG136 treatment UVSSA localized to the chromatin and interacts with repair proteins CSA, CSB, and TFIIH. These interactions are also significantly enriched upon UV damage. Direct comparison reveals a significant correlation between UV or ICL damage induced interactions, indicating that the same mechanisms are triggered by different damage types. Our data reveals the mechanism of transcription coupled ICL repair which engages similar pathways as previously characterized transcription coupled repair.
DOI: 10.34740/kaggle/dsv/5341753
title: Russian Sensitive Topics
DOI: 10.34740/kaggle/dsv/5341757
title: russian-inappropriate-messages
DOI: 10.5281/zenodo.7809214
title: Central European Grid Frequency data in Open-ENF .fredb format

description: This file contains the Central European Wide Area Grid frequency for each second betwen 31st Dec 2009 23:00 UTC and 31st Dec 2020 23:00
DOI: 10.5281/zenodo.7809215
title: Central European Grid Frequency data in Open-ENF .fredb format

description: This file contains the Central European Wide Area Grid frequency for each second betwen 31st Dec 2009 23:00 UTC and 31st Dec 2020 23:00
DOI: 10.5281/zenodo.7809233
title: Central European Grid Frequency data in Open-ENF .fredb format

description: This file contains the Central European Wide Area Grid frequency for each second betwen 31st Dec 2009 23:00 UTC and 31st Dec 2020 23:00
DOI: 10.5281/zenodo.7809240
title: austrolebias_nigripinnis_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.7809241
title: austrolebias_nigripinnis_spades_01.fasta.gz

description: .
DOI: 10.5517/ccdc.csd.cc2dlkbx
title: CCDC 2222369: Experimental Crystal Structure Determination

description: Related Article: Haibin Zhang, Heshan Li, Shitao Sun, Lei Tan, Hongyan Shen, Bin Lin, Peng Yang|2023|Org.Lett.|25|2078|doi:10.1021/acs.orglett.3c00442
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dnhf0
title: CCDC 2224232: Experimental Crystal Structure Determination

description: Related Article: Hongyuan Ren, Ping Zhang, Jingkai Xu, Wenli Ma, Deshuang Tu, Chang-sheng Lu, Hong Yan|2023|J.Am.Chem.Soc.|145|7638|doi:10.1021/jacs.3c01314
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dnhg1
title: CCDC 2224233: Experimental Crystal Structure Determination

description: Related Article: Hongyuan Ren, Ping Zhang, Jingkai Xu, Wenli Ma, Deshuang Tu, Chang-sheng Lu, Hong Yan|2023|J.Am.Chem.Soc.|145|7638|doi:10.1021/jacs.3c01314
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dnhh2
title: CCDC 2224234: Experimental Crystal Structure Determination

description: Related Article: Hongyuan Ren, Ping Zhang, Jingkai Xu, Wenli Ma, Deshuang Tu, Chang-sheng Lu, Hong Yan|2023|J.Am.Chem.Soc.|145|7638|doi:10.1021/jacs.3c01314
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dnhj3
title: CCDC 2224235: Experimental Crystal Structure Determination

description: Related Article: Hongyuan Ren, Ping Zhang, Jingkai Xu, Wenli Ma, Deshuang Tu, Chang-sheng Lu, Hong Yan|2023|J.Am.Chem.Soc.|145|7638|doi:10.1021/jacs.3c01314
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dnhk4
title: CCDC 2224236: Experimental Crystal Structure Determination

description: Related Article: Hongyuan Ren, Ping Zhang, Jingkai Xu, Wenli Ma, Deshuang Tu, Chang-sheng Lu, Hong Yan|2023|J.Am.Chem.Soc.|145|7638|doi:10.1021/jacs.3c01314
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dnhl5
title: CCDC 2224237: Experimental Crystal Structure Determination

description: Related Article: Hongyuan Ren, Ping Zhang, Jingkai Xu, Wenli Ma, Deshuang Tu, Chang-sheng Lu, Hong Yan|2023|J.Am.Chem.Soc.|145|7638|doi:10.1021/jacs.3c01314
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dnhn7
title: CCDC 2224239: Experimental Crystal Structure Determination

description: Related Article: Hongyuan Ren, Ping Zhang, Jingkai Xu, Wenli Ma, Deshuang Tu, Chang-sheng Lu, Hong Yan|2023|J.Am.Chem.Soc.|145|7638|doi:10.1021/jacs.3c01314
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dphzl
title: CCDC 2225210: Experimental Crystal Structure Determination

description: Related Article: Hongyuan Ren, Ping Zhang, Jingkai Xu, Wenli Ma, Deshuang Tu, Chang-sheng Lu, Hong Yan|2023|J.Am.Chem.Soc.|145|7638|doi:10.1021/jacs.3c01314
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f8091
title: CCDC 2242022: Experimental Crystal Structure Determination

description: Related Article: Wenli Song, Yunyun Liu, Nan Yan, Jie-Ping Wan|2023|Org.Lett.|25|2139|doi:10.1021/acs.orglett.3c00636
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d6jqw
title: CCDC 2210818: Experimental Crystal Structure Determination

description: Related Article: Angus Olding, Curtis C. Ho, Nigel T. Lucas, Alex C. Bissember|2023|Inorg.Chem.|62|5054|doi:10.1021/acs.inorgchem.3c00198
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fk179
title: CCDC 2250700: Experimental Crystal Structure Determination

description: Related Article: Michael Bolte, Thomas Kaese, Matthias Wagner|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fk18b
title: CCDC 2250701: Experimental Crystal Structure Determination

description: Related Article: Michael Bolte, Thomas Kaese, Matthias Wagner|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fk1bd
title: CCDC 2250703: Experimental Crystal Structure Determination

description: Related Article: Michael Bolte, Wolfram Lerner|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fk405
title: CCDC 2250786: Experimental Crystal Structure Determination

description: Related Article: Michael Bolte, Isabelle Georg, Matthias Wagner|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fk5gn
title: CCDC 2250831: Experimental Crystal Structure Determination

description: Related Article: Michael Bolte, Julian Teichmann, Matthias Wagner|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fk5hp
title: CCDC 2250832: Experimental Crystal Structure Determination

description: Related Article: Michael Bolte, Julian Teichmann, Matthias Wagner|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fk5jq
title: CCDC 2250833: Experimental Crystal Structure Determination

description: Related Article: Michael Bolte, Julian Teichmann, Matthias Wagner|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.3761562.v2549
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.22577641
title: Political, Economic, and Social Factors Affecting the Development of Russian Statehood: Emerging Research and Opportunities

description: The historical development of Russia remains one of the most unique yet ambiguous timelines in the realm of political science and sociology. Understanding the state of culture as a single, dynamic, and interrelated phenomenon is a vital component regarding the memoirs of this prominent nation. <strong>Political, Economic, and Social Factors Affecting the Development of Russian Statehood: Emerging Research and Opportunities</strong> is a collection of innovative research on the historical aspects of the formation of the political system in Russia and proposes directions for the further development of modern Russian statehood. While highlighting topics including socio-politics, Soviet culture, and capitalization, this book is ideally designed for economists, government officials, policymakers, historians, diplomats, intelligence specialists, political analysts, professors, students, and professionals seeking current research on the history of public administration in Russia.
DOI: 10.6084/m9.figshare.22577641.v1
title: Political, Economic, and Social Factors Affecting the Development of Russian Statehood: Emerging Research and Opportunities

description: The historical development of Russia remains one of the most unique yet ambiguous timelines in the realm of political science and sociology. Understanding the state of culture as a single, dynamic, and interrelated phenomenon is a vital component regarding the memoirs of this prominent nation. <strong>Political, Economic, and Social Factors Affecting the Development of Russian Statehood: Emerging Research and Opportunities</strong> is a collection of innovative research on the historical aspects of the formation of the political system in Russia and proposes directions for the further development of modern Russian statehood. While highlighting topics including socio-politics, Soviet culture, and capitalization, this book is ideally designed for economists, government officials, policymakers, historians, diplomats, intelligence specialists, political analysts, professors, students, and professionals seeking current research on the history of public administration in Russia.
DOI: 10.21227/d571-r617
title: A comparison between Linux approaches for soft real-time applications

description: The growth of the use of the Linux operating system in embedded systems projects brings to the spotlight essential questions about the capabilities of this operating system in real-time systems, in particular, soft real-time systems. In this context, the quantitative analysis of Linux-based embedded systems is the focus of this paper, which includes the evaluation of the latency time, jitter, and worst-case response time. Therefore, using a signal generator, a logic analyzer, and a single-board computer, this paper implements a computational routine that interfaces with the General Purpose Input/Output (GPIO) of the embedded system, replying to the stimuli generated by the signal generator. These routines were implemented in User Space and Kernel Space on a Linux-based distribution and, also, for PREEMPT\_RT and Xenomai real-time patches. The result is a holistic comparison between those Linux approaches showing that, although Xenomai outperformed the others and can be applied for hard real-time applications, all the analyzed approaches can be applied for soft real-time applications depending on the project requirements and development constraints.
DOI: 10.6084/m9.figshare.22577536
title: scverse tutorial data: Getting started with AnnData

description: The data is derived from the 3k PBMC data used in scanpy & Seurat tutorials. In comes in the AnnData h5ad format. <br> Processed <em>3k PBMCs from a Healthy Donor</em> from 10x Genomics, available at https://scanpy.readthedocs.io/en/stable/generated/scanpy.datasets.pbmc3k_processed.html Original 10X data available at http://cf.10xgenomics.com/samples/cell-exp/1.1.0/pbmc3k/pbmc3k_filtered_gene_bc_matrices.tar.gz from this website: https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/pbmc3k <br> The changes made to the original `scanpy.datasets.pbmc3k_processed()` data are described in this github issue: https://github.com/scverse/scverse-tutorials/issues/51 <br> See jupyter notebook for details.
DOI: 10.6084/m9.figshare.22577536.v1
title: scverse tutorial data: Getting started with AnnData

description: The data is derived from the 3k PBMC data used in scanpy & Seurat tutorials. In comes in the AnnData h5ad format. <br> Processed <em>3k PBMCs from a Healthy Donor</em> from 10x Genomics, available at https://scanpy.readthedocs.io/en/stable/generated/scanpy.datasets.pbmc3k_processed.html Original 10X data available at http://cf.10xgenomics.com/samples/cell-exp/1.1.0/pbmc3k/pbmc3k_filtered_gene_bc_matrices.tar.gz from this website: https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/pbmc3k <br> The changes made to the original `scanpy.datasets.pbmc3k_processed()` data are described in this github issue: https://github.com/scverse/scverse-tutorials/issues/51 <br> See jupyter notebook for details.
DOI: 10.17909/ev9z-hp58
title: Data for Paper 4 N/C ratio

description: BW Sc STIS, SW UMa STIS, BC UMa STIS, VW Hyi STIS, DW UMa STIS, RX And GHRS, all WD spectra
DOI: 10.6084/m9.figshare.22577749
title: Copywriters' Preference Evaluation on Online Copywriting Course Attributes during the COVID-19 Pandemic

description: Raw data of research entitled "<strong>Copywriters' Preference Evaluation on Online Copywriting Course Attributes during the COVID-19 Pandemic</strong>"
DOI: 10.5519/qd.ersa9voe
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (24 records)
DOI: 10.25345/c5sj1b19g
title: MassIVE MSV000091661 - Proteome of Deciliated Tetrahymena thermophila "Bodies" Fractionated by IEX or SEC.
title: Tetrahymena thermophil SB715 were deciliated by pH shock, collected by centrifugation, washed once and flash frozen. Lysate was made by grinding in liquid nitrogen and resuspension in buffer containing 0.2% NP40 with pipetting. Lysate was clarified by sequential centrifugations including 1 hour 130,000 x g 4C. Clarified lysate was fractionated by HPLC SEC or diluted to reduce salts to 22mM NaCl prior to fractionation by mixed-bed IEX. Fractions were reduced/alkylated and digested with trypsin for DDA LC-MS/MS. Data from SEC fractions was collected on an Orbitrap Fusion Lumos using a 75 minute top speed HCD method. Data from IEX fractions was collected on an Orbitrap Fusion using a 75 minute Topspeed CID method.