cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.h9m2eb
title: Occurrence Download

description: A dataset containing 956 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jupunba brachystachya (DC.) M.V.B.Soares, M.P.Morim & Iganci"
 ]
}

 The dataset includes 956 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004515-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.syvbf3
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present",
 "TaxonKey is Cuniculus paca (Linnaeus, 1766)",
 "Year 2015-2021"
 ]
}

 The dataset includes 48 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305220-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zzhmf
title: Occurrence Download

description: A dataset containing 470 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phrynosoma cornutum (Harlan, 1825)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-111.665039 35.101934,-111.665039 31.240985,-106.149902 31.240985,-106.149902 35.101934,-111.665039 35.101934))"
 ]
}

 The dataset includes 470 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013580-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xkzdyz
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Halenia rothrockii A.Gray"
 ]
}

 The dataset includes 28 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164706-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y8xwms
title: Occurrence Download

description: A dataset containing 916 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sinningia aggregata (Ker Gawl.) Wiehler"
 ]
}

 The dataset includes 916 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046730-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z6sczb
title: Occurrence Download

description: A dataset containing 11170 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((4.675 51.925,4.725 51.925,4.725 51.975,4.675 51.975,4.675 51.925))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 11170 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305229-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9fjcmh
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((34.59262 -15.66295,165.40738 -15.66295,165.40738 36.66295,34.59262 36.66295,34.59262 -15.66295))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Selaginella bisulcata Spring"
 ]
}

 The dataset includes 36 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046845-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lxxmvj
title: Occurrence Download

description: A dataset containing 12036 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-8.052383325559529 49.7489738100575,-2.2516020755595285 49.7489738100575,-2.2516020755595285 55.5277824038075,-8.052383325559529 55.5277824038075,-8.052383325559529 49.7489738100575))",
 "HasCoordinate is true",
 "TaxonKey is Elasmobranchii",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12036 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013581-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.crgn2v
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "GadmGid is CHN.30_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhododendron mariae Hance",
 "Year 1980-2021"
 ]
}

 The dataset includes 38 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0312632-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4nc6dk
title: Occurrence Download

description: A dataset containing 1513 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asclepias viridiflora Raf."
 ]
}

 The dataset includes 1513 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013582-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qmagg
title: Occurrence Download

description: A dataset containing 782 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aeschynanthus bracteatus Wall. ex A.DC."
 ]
}

 The dataset includes 782 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017358-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mbv8x
title: Occurrence Download

description: A dataset containing 1273 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phrynosoma modestum Girard, 1852",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1273 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013583-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dkfhkg
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Saxifraga tangutica Engl.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 207 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0321393-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zm7ua7
title: Occurrence Download

description: A dataset containing 1452 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Glossophaga commissarisi Gardner, 1962",
 "Year 1918-2024"
 ]
}

 The dataset includes 1452 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046733-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvugoq
title: Occurrence Download

description: A dataset containing 27462 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Fallopia sachalinensis (F. Schmidt) Ronse Decr.",
 "TaxonKey is Fallopia Bubani, 1897",
 "TaxonKey is Fallopia ×bohemica (Chrtek & Chrtková) J.P.Bailey",
 "TaxonKey is Fallopia japonica (Houtt.) Ronse Decr."
 ]
}

 The dataset includes 27462 records from 205 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013584-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pvvksw
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Huberia laurina DC."
 ]
}

 The dataset includes 77 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164707-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uvxkq9
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Saxifraga sinomontana J.T.Pan & Gornall",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 59 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0321386-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mevanp
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lichonycteris obscura Thomas, 1895",
 "Year 1916-2024"
 ]
}

 The dataset includes 98 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046738-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mbiy2i
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amphelasma cavum (Say, 1835)"
 ]
}

 The dataset includes 24 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013585-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tum8ec
title: Occurrence Download

description: A dataset containing 372 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypochaeris taraxacoides (Meyen & Walp.) Ball"
 ]
}

 The dataset includes 372 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0285969-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9jwy4
title: Occurrence Download

description: A dataset containing 1231 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Graphephorum cernuum (Trin.) Röser & Tkach"
 ]
}

 The dataset includes 1231 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164708-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gsa7iu
title: Occurrence Download

description: A dataset containing 897 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Actinidia chinensis Planch.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 897 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013585-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tv45w4
title: Occurrence Download

description: A dataset containing 27444745 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia"
 ]
}

 The dataset includes 27444745 records from 3665 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046729-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gycnfd
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Hippocampus ingens Girard, 1858"
 ]
}

 The dataset includes 23 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022078-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8455688
title: Egypt Gold Prices | Daily Updated
DOI: 10.15468/dl.ztrhsz
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Isurus Rafinesque, 1810"
 ]
}

 The dataset includes 24 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022082-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25854769
title: PESTCHEMGRIDS v2.01 (beta version)

description: This new release of PEST-CHEMGRIDS (version 2.01, beta) delivers updated application rates for up to 115 individual Pesticide Active Substances (PAS) covering 6 individual major crops and 4 aggregated crops at a global spatial resolution of 0.05 degree/grid cell (approximately 5.5 km at the equator). This update includes new datasets used for estimates construction, an improved method of spatialization as compared to PEST-CHEMGRIDSv1.01, and a wider validation. We have also included updates of national bans on specific PAS and a wider set of nationally approved GMOs and PAS. The estimates in PEST-CHEMGRIDS v2.01beta provide “high” and “low” application rates in 2015 and 2018.
DOI: 10.6084/m9.figshare.25854769.v1
title: PESTCHEMGRIDS v2.01 (beta version)

description: This new release of PEST-CHEMGRIDS (version 2.01, beta) delivers updated application rates for up to 115 individual Pesticide Active Substances (PAS) covering 6 individual major crops and 4 aggregated crops at a global spatial resolution of 0.05 degree/grid cell (approximately 5.5 km at the equator). This update includes new datasets used for estimates construction, an improved method of spatialization as compared to PEST-CHEMGRIDSv1.01, and a wider validation. We have also included updates of national bans on specific PAS and a wider set of nationally approved GMOs and PAS. The estimates in PEST-CHEMGRIDS v2.01beta provide “high” and “low” application rates in 2015 and 2018.
DOI: 10.15468/dl.bbwsmb
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Lamna nasus (Bonnaterre, 1788)"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022084-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.897183
title: Magnetic susceptibility at different grain sizes of core top samples from the EDISTO Array

description: All magnetic data have been mass corrected and for Mrs, Ms, and Hc the data arepresented after paramagnetic slope correction using the slope above 800mT.
DOI: 10.15468/dl.ndtyuz
title: Occurrence Download

description: A dataset containing 10471 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heliconius erato (Linnaeus, 1758)"
 ]
}

 The dataset includes 10471 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022085-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25853938.v1
title: 20240519_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.1594/pangaea.965959
title: Video In Situ Snowfall Sensor (VISSS) data for Ny-Ålesund on 2022-07-03

description: The VISSS is a camera system recording precipitating snowfall from two perspectives. Here, movies and images of falling precipitation particles are provided for one day at station Ny-Ålesund. For further details on the VISS Sensor see Maahn et al. (2024).
DOI: 10.1594/pangaea.965963
title: Video In Situ Snowfall Sensor (VISSS) data for Ny-Ålesund on 2022-07-06

description: The VISSS is a camera system recording precipitating snowfall from two perspectives. Here, movies and images of falling precipitation particles are provided for one day at station Ny-Ålesund. For further details on the VISS Sensor see Maahn et al. (2024).
DOI: 10.1594/pangaea.966004
title: Video In Situ Snowfall Sensor (VISSS) data for Ny-Ålesund on 2022-07-21

description: The VISSS is a camera system recording precipitating snowfall from two perspectives. Here, movies and images of falling precipitation particles are provided for one day at station Ny-Ålesund. For further details on the VISS Sensor see Maahn et al. (2024).
DOI: 10.1594/pangaea.966017
title: Video In Situ Snowfall Sensor (VISSS) data for Ny-Ålesund on 2022-08-21

description: The VISSS is a camera system recording precipitating snowfall from two perspectives. Here, movies and images of falling precipitation particles are provided for one day at station Ny-Ålesund. For further details on the VISS Sensor see Maahn et al. (2024).
DOI: 10.6084/m9.figshare.25853119
title: Additional file 1 of Single-cell transcriptomic landscape and the microenvironment of normal adjacent tissues in hypopharyngeal carcinoma

description: Supplementary Material 1.
DOI: 10.15151/esrf-es-1541962979
title: Italian CryoEM Bag (ICB)

description: This BAG application builds on the development of single particle cryoEM in the Italian Structural Biology community, as in Italy there is no top-end instrument is open to rhe structural biology community.
The groups in this application have acquired know-how in cryoEM through international collaborations or by acquiring medium-level in-house equipment. Access to
the CM01 beamline at the ESRF since August 2020 has allowed the development of projects from groups that do not have in-house equipment that resulted in paper in publication on Nucleic Acid Research NAR.
We now have four screening microscopes in Italy and three more are being funded, making the access to CM01 more demanded and relevant for high-resolution data and, consequently high profile publications.
DOI: 10.5281/zenodo.11201283
title: lr-kallisto Simulation Dataset

description: NanoSim pretrained model human_NA12878_dRNA_Bham1_guppy was used to generate transcriptomic reads, stored in file human_NA12878_dRNA_Bham1_guppy_reads.fastq.gz.

The modified uLTRA simulators, included in https://github.com/pachterlab/LSRRSRLFKOTWMWMP_2024 Figures folder SupplementaryFigure4, were used to generate:

ultra_sim_ONT_homo_2M.fq.gz (2 million ONT InDel Profile reads at 1% sequencing error),ultra_sim_ONT_homo_2M.02.fq.gz (2 million ONT InDel Profile reads at 2% sequencing error),ultra_sim_ONT_homo_2M.04.fq.gz (2 million ONT InDel Profile reads at 4% sequencing error),

ultra_sim_PB_homo_2M.001.fq.gz (2 million ONT InDel Profile reads at 0.1% sequencing error),ultra_sim_PB_homo_2M.005.fq.gz (2 million ONT InDel Profile reads at 0.5% sequencing error),ultra_sim_PB_homo_2M.015.fq.gz (2 million ONT InDel Profile reads at 1.5% sequencing error), andultra_sim_PB_homo_2M.02.fq.gz (2 million ONT InDel Profile reads at 2% sequencing error).

 

Lastly, 2 simulation files were not uploaded (due to size of files): Mouse.ONT.R10.4.simulated.shuffled.fastq.gz and human_NA12878_cDNA_Bham1_guppy_reads.fastq.gz. Mouse.PB.simulated.shuffled.fastq.gz and Mouse.ONT.R10.4.simulated.shuffled.fastq.gz are the simulations performed in Prjibelski et al. 2023 (https://doi.org/10.1038/s41587-022-01565-y) that were converted from bams to fastqs with samtools and shuffled with bbtools. NanoSim pretrained model human_NA12878_cDNA_Bham1_guppy was used to generate 10 million transcriptomic reads stored in file human_NA12878_cDNA_Bham1_guppy_reads.fastq.gz.
DOI: 10.5281/zenodo.11201284
title: lr-kallisto Simulation Dataset

description: NanoSim pretrained model human_NA12878_dRNA_Bham1_guppy was used to generate transcriptomic reads, stored in file human_NA12878_dRNA_Bham1_guppy_reads.fastq.gz.

The modified uLTRA simulators, included in https://github.com/pachterlab/LSRRSRLFKOTWMWMP_2024 Figures folder SupplementaryFigure4, were used to generate:

ultra_sim_ONT_homo_2M.fq.gz (2 million ONT InDel Profile reads at 1% sequencing error),ultra_sim_ONT_homo_2M.02.fq.gz (2 million ONT InDel Profile reads at 2% sequencing error),ultra_sim_ONT_homo_2M.04.fq.gz (2 million ONT InDel Profile reads at 4% sequencing error),

ultra_sim_PB_homo_2M.001.fq.gz (2 million ONT InDel Profile reads at 0.1% sequencing error),ultra_sim_PB_homo_2M.005.fq.gz (2 million ONT InDel Profile reads at 0.5% sequencing error),ultra_sim_PB_homo_2M.015.fq.gz (2 million ONT InDel Profile reads at 1.5% sequencing error), andultra_sim_PB_homo_2M.02.fq.gz (2 million ONT InDel Profile reads at 2% sequencing error).

 

Lastly, 2 simulation files were not uploaded (due to size of files): Mouse.ONT.R10.4.simulated.shuffled.fastq.gz and human_NA12878_cDNA_Bham1_guppy_reads.fastq.gz. Mouse.PB.simulated.shuffled.fastq.gz and Mouse.ONT.R10.4.simulated.shuffled.fastq.gz are the simulations performed in Prjibelski et al. 2023 (https://doi.org/10.1038/s41587-022-01565-y) that were converted from bams to fastqs with samtools and shuffled with bbtools. NanoSim pretrained model human_NA12878_cDNA_Bham1_guppy was used to generate 10 million transcriptomic reads stored in file human_NA12878_cDNA_Bham1_guppy_reads.fastq.gz.
DOI: 10.15468/dl.je8rk3
title: Occurrence Download

description: A dataset containing 12950 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Institut Botanic de Barcelona (IBB), CSIC-CMCNB – BC-Trèmols"
 ]
}

 The dataset includes 12950 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022086-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/00g-f89-t4d
title: Amphipoea Billberg, 1820

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/dg2-wmk-5em
title: Hydraecia micacea Esper, 1789

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/3yv-r76-32e
title: Amphipoea Billberg, 1820

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/j70-sfm-tx4
title: Oeneis jutta Hübner, 1806

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/jlf-qdl-t9k
title: Amphipoea Billberg, 1820

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.