cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28926965.v1
title: Differential Abundance Results (from radEmu)

description: Tables with results from differential abundance. This includes ASVs with significance enrichment in the levels explores. Defined as abs(estimate)&gt;ln(2). <br>For the "strat" table this includes summer and inverse columns form lakes Superior, Michigan, Ontario. This table also includes the ASV correclation (Abundance) with estimated light (Supp Table 2) and temperature.
DOI: 10.17632/2kps5h22d5
title: Regulator of G-protein signaling 14 (RGS14) Promotes Cancer Growth in Hepatocellular Carcinoma

description: The gene expression levels from the bulk RNA sequencing process for RGS14/huh7 and GFP/huh7.
DOI: 10.6084/m9.figshare.20003180.v1
title: example_data.zip

description: example data for scDrug pipleine
DOI: 10.6084/m9.figshare.25036019.v1
title: Transcranial focused ultrasound neuromodulation on a nonhuman primate model

description: In these datasets, we applied low-intensity tFUS stimulation with a customized 128-element random array ultrasound transducer (<i>f</i>0: 700 kHz) in a rhesus macaque monkey engaged in a simple visually-guided saccade task. The stimulation was guided stereotaxically to the frontal eye field (FEF), a region of frontal cortex that guides eye movements. We recorded simultaneously from a 96-channel Utah array implanted in V4, a region of extrastriate visual cortex that receives feedback connections from FEF.The monkey subject was trained to perform tasks while seated in front of a computer screen. A visual stimulus (a natural image) was delivered for 400 ms while the subject maintained fixation. A reward was provided if the subject maintain fixation for the full trial and then followed the fixation dot when it moved to a peripheral location. For most recording sessions, 120 trials only with visual stimulation (400 ms) and 120 trials with concurrent visual and tFUS (300 ms) stimulation were mixed and randomly presented. By applying multiple different ultrasound parameters, those generated local field potentials (LFPs) at V4 were studied and compared. The tFUS was also directed to insula, which does not have substantial connections to V4, to validate the neuromodulation effects at V4 were not due to auditory side effects through skull conductions.The shared datasets include 39 files originated from 13 experimental conditions. The events of visual stimuli and ultrasound stimuli are included in these files. Please see the <b>README</b> file for further information on how to load LFP and spiking data from each dataset. The name of each dataset is corresponding to the figure number as listed in the corresponding manuscript:<b>Yu K, Schmitt S, Ni Y, Crane E, Smith M, He B. Transcranial Focused Ultrasound Remotely Modulates Extrastriate Visual Cortex with Subregion Specificity.</b><b> </b><b><i>bioRxiv</i></b><b>: </b><b>https://doi.org/10.1101/2024.01.20.576476.</b>This work was supported in part by NIH EB029354, NS124564, and NS131069. Animal care and handling are according to the regulation of Institutional Animal Care and Use Committee of Carnegie Mellon University and complied with National Institutes of Health guidelines.If anyone uses the whole or part of the dataset provided here, we kindly ask you to cite the above publication in any of your publications or presentations.
DOI: 10.6084/m9.figshare.4235546.v1
title: SPACECAP input files

description: Zip archive containing SPACECAP input files for 24 surveys of leopard population density in the Soutpansberg Mountains, South Africa from 2012 to 2016. For each survey (for dates see article) the archive contains a - capture history file "capture_sXX.csv" - trap deployment file "deployment_sXX.csv" - potential home range centres file "HRC_s01.csv"
DOI: 10.6084/m9.figshare.5772549.v1
title: Agency and discretion in police practice

description: ABSTRACT The interest in the individual-society relationship is characterized in social theory by the diversity concerning the role of agency in human action. In this article, we revisit the issue of agency in an applied perspective. We aim to examine agency in police practice through the analysis of the meta-agentive discourse emerged in a narrative whose theme was the disrespect of a police officer during a research interview. The analysis shows that: (i) despite the range of possible choices of actions circumscribed by the law and the situated contexts, a single route of action is usually applied to all situations that are evaluated as disrespect; (ii) there is a new model of police officer whose reflexive and critical character is aligned with a model of community-oriented police that the government has been trying to implement in public security policies in Rio de Janeiro.
DOI: 10.6084/m9.figshare.16743751.v1
title: Field_Pea

description: A flat csv file contaning all data for the labeled species, at the resolution of site-variety-year combinations. Wheat is split into three files as there are too many records. Barley is excluded for ethical reasons, available on request.
DOI: 10.6084/m9.figshare.26056804.v1
title: Waveform data for the 2023 Jishishan earthquake

description: The waveform data used for inverting the 3D crustal structure around the 2023 Jishishan earthquake.
DOI: 10.6084/m9.figshare.3519083.v1
title: Appendix A. Mathematical description of persistence in spatially structured populations.

description: Mathematical description of persistence in spatially structured populations.
DOI: 10.6084/m9.figshare.16743811.v1
title: Wheat_part1

description: A flat csv file contaning all data for the labeled species, at the resolution of site-variety-year combinations. Wheat is split into three files as there are too many records. Barley is excluded for ethical reasons, available on request. Part 1/3 of the wheat data.<br>
DOI: 10.6084/m9.figshare.28319150.v1
title: Datasets for: Understanding the Role of Psychological Distance in Preventing the Spread of Kauri Dieback

description: <b>Background</b>: Kauri dieback is a soil-borne pathogen of the family Phytophthora which is lethal to kauri trees. Despite its risks, residents of New Zealand often do not follow imposed mitigation strategies. In this study we explored the potential impact of three factors on psychological distance to kauri dieback: pro-environmental worldviews, trust in government and physical distance from kauri forests. We also investigated the extent to which previously validated psychological distance measures predicted kauri forest visitors’ compliance with boot-cleaning and trail-usage guidelines (behaviours linked to the spread of kauri dieback).<b>Methods</b>: A survey assessing beliefs and behaviours related to kauri dieback was completed by a sample of 451 New Zealand residents who had visited a kauri forest in the past four years. Two SEM path analyses were conducted to determine whether the effects of environmental worldview (NEP score), trust in government, and physical distance on boot cleaning and track use compliance behaviours were mediated by psychological distance.<b>Results</b>: Direct effects indicated that higher NEP score and closer physical distance significantly reduced psychological distance, but trust in government did not. Closer psychological distance also significantly improved self-reported track use and boot cleaning behaviours. Indirect effects indicated that psychological distance significantly mediated the effects of worldview, trust and physical distance on boot cleaning and track usage. Several significant direct effects of the exogenous predictors on the compliance behaviours were present after controlling for the mediator, indicative of partial mediation.<b>Conclusions</b>: Psychological distance is a reliable predictor of respondents’ boot-cleaning and track-use compliance. Interventions to decrease psychological distance may be beneficial for increasing compliance, although the effects were modest and other potential determinants of compliance also require investigation.
DOI: 10.17632/n7vf5xfvw6
title: Emerging markets : some firm-specific fundamentals

description: The data is about some emerging markets firms fundamentals for the period 2010-2018. The data are gathered from Compustat Global. It includes the variables total assets, cash and equivalents, capital expenditures, leverage, R&D, Cash flow, intangibles, net working capital, yearly sales growth, cash flow volatility...
DOI: 10.6084/m9.figshare.5480890.v1
title: R Script from Do extra-group fertilizations increase the potential for sexual selection in male mammals?

description: R Script for running the main statistical analyses reported in the paper
DOI: 10.17632/zssjp63hd7
title: Grotta Romanelli portable art: GRM1023 optical scan model

description: On the occasion of the review of the portable art of Grotta Romanelli, a decorated stone with a feline figure, GRM1023, was object of an interdisciplinary study.
The object was threedimensionally recorded using both photogrammetry and optical scanning.
High detail model of GRM1023 and its engravings was made using the Artec Space Spider structured light optical scanner. The scanner reaches a high level of accuracy (0.05mm) and, at the same time, allows scanning of object up to 40 cm in length, without posing any danger to the integrity of the scanned specimen. 
GRM1023 was carefully placed cloth with an opaque black colour to avoid colour contrasts during scanning. Three scans were made at separate times rotating the rock fragment, capturing the entire find collecting information about its texture and morphology.
The scan session duration was of 10 minutes and data were saved within the software Artec Studio 16 Professional. Through the same software the scans were aligned to create the original morphology of the object in all its parts.
After cleaning the ordinary disturbing elements, the mesh was created, to which the texture was subsequently applied. The final models are constituted by 1.600.000 facets and have been exported in the .OBJ file type.
DOI: 10.17632/hdbbjbwxwy
title: Tree growth and twd 2021-2022 from automatic dendrometers_Czech Rep.

description: Hourly and daily tree growth (GRO), stem radius changes (Radius) and tree water deficit (TWD) from 89 trees collected in the Czech Republic in the climatically normal year 2021 and the unusually warm year 2022. Metadata for each tree is provided.
DOI: 10.6084/m9.figshare.13012871.v1
title: Gene database of Mycobacteroides abscessus strain FLAC013

description: <i>Mycobacteroides abscessus</i> belongs to a complex of mycobacteria that are multi-drug resistant and causes lung, skin and soft tissue infections in human. Common in soil and water environment, the microbe could also infect other human organs, thereby, marking it as clinically important. This work sought to provide fundamental information about the genetic repertoire of <i>M. abscessus</i> strain FLAC013 through processing the annotated genome sequence of the species obtained from Genbank. Comprising gene name, gene function, and gene sequence, the resource should find use in functional genomics studies seeking to link particular genes to specific pathogenic mechanisms endowed by the bacterium.
DOI: 10.6084/m9.figshare.28898690.v2
title: Biomimetic Signal Generators in Epilepsy Neuromodulation with Reservoir Computing

description: Preprocessed, multi-site extracellular electrical recordings from neuronal cell cultures developing <i>ex vivo</i> on substrate-integrated microelectrode arrays (MEAs)
DOI: 10.6084/m9.figshare.28930562.v1
title: Supplementary Material for: Decoding Precision Aging: The Intersection of Cognitive Decline, Frailty, and Hormonal Biomarkers

description: Background: Cognitive frailty, characterized by the coexistence of cognitive impairment and physical frailty, is a significant predictor of cognitive decline. However, few studies integrate both cognitive and physical assessments alongside hormonal markers, such as cortisol, that may influence frailty and cognitive function. To address this gap, our study combines non-invasive physical, cognitive, and cortisol markers to assess frailty in aging adults.
 
Methods: Data were collected from four sites as part of the Healthy Minds for Life (HML) longitudinal cohort, a project within the Precision Aging Network. Baseline data included cognitive evaluation using the Montreal Cognitive Assessment (MoCA); frailty assessment using a validated 20-second elbow flexion-extension test analyzed by AI under single-task and dual-task conditions; cortisol measurement in eccrine sweat samples via Direct Analysis in Real Time Mass Spectrometry (DART-MS); and demographic information.
 
Results: Of 202 participants completing all assessments, 60 were identified with mild cognitive impairment (MCI). The dual-task frailty index (FI) derived from the 20-second test significantly differentiated individuals with MCI from cognitively robust participants and correlated strongly with MoCA scores (p = 0.015). The dual-task FI showed superior model fit compared to the single-task FI when predicting cognitive function. A significant correlation between the dual-task FI and cortisol by age interaction was observed (p = 0.0042) highlighting the potential impact of cortisol to moderate the relationship between frailty and age in an otherwise healthy aging population. By contrast, no significant correlation was found between dual-task FI and aging outside of the presence of cortisol (p = 0.116) in this study. 

Conclusions: This study highlights practical and efficient methods for assessing frailty emphasizing the value of dual-task testing and cortisol measures in identifying individuals at higher risk for cognitive and physical decline. The findings underscore the importance of integrating hormonal markers with cognitive and physical assessments to enhance risk stratification and intervention planning in aging populations.
DOI: 10.6084/m9.figshare.793828.v1
title: Periphyton biomass spatial patterns and species abundances

description: Images of periphyton's biomass colonization in artificial substrata. The experiment was described in [1] but these images were not analyzed in the paper and not included in the data uploaded to dryad [2]. The original hypothesis was that the growth of microalgae in artificial substrata have a two dimensional multifractal structure. I include measurements of environmental variables and nutrients not analyzed in the paper. We used this software: https://github.com/lsaravia/tiff2biom https://github.com/lsaravia/mfsba References 1. Saravia LA, Giorgi A, Momo F (2012) Multifractal growth in periphyton communities. Oikos 121: 1810–1820. doi:10.1111/j.1600-0706.2011.20423.x. 2. Saravia LA, Giorgi A, Momo F (2012) Data from: Multifractal growth in periphyton communities. Oikos. doi:10.5061/dryad.61cj4.
DOI: 10.6084/m9.figshare.25577973.v2
title: Hydrochemical data of two glacial meltwater during the initial abrasion period

description: This data is about hydrochemical information of two glacial meltwater on the Tibetan Plateau, including physico-chemical parameters, tracer tests, major ionic concentration, <i>p</i>CO<sub>2</sub>, dissolved inorganic carbon concentrantion and its stable carbon isotopes.
DOI: 10.6084/m9.figshare.27281400.v1
title: Data used to train the final random forest model.

description: Quantifying prediction uncertainty when applying object detection models to new, unlabeled datasets is critical in applied machine learning. This study introduces an approach to estimate the performance of deep learning-based object detection models for quantifying defects in transmission electron microscopy (TEM) images, focusing on detecting irradiation-induced cavities in TEM images of metal alloys. We developed a random forest regression model that predicts the object detection F1 score, a statistical metric used to evaluate the ability to accurately locate and classify objects of interest. The random forest model uses features extracted from the predictions of the object detection model whose uncertainty is being quantified, enabling fast prediction on new, unlabeled images. The mean absolute error (MAE) for predicting F1 of the trained model on test data is 0.09, and the R<sup>2</sup> score is 0.77, indicating there is a significant correlation between the random forest regression model predicted and true defect detection F1 scores. The approach is shown to be robust across three distinct TEM image datasets with varying imaging and material domains. Our approach enables users to estimate the reliability of a defect detection and segmentation model predictions and assess the applicability of the model to their specific datasets, providing valuable information about possible domain shifts and whether the model needs to be fine-tuned or trained on additional data to be maximally effective for the desired use case.
DOI: 10.17632/tdxfppmtby
title: Alvarado AM, Venegas BC, Salazar AM.Aplicación del Modelo de Adaptación de Roy en el contexto comunitario. Mendeley Data

description: Datos de la Investigacion
DOI: 10.6084/m9.figshare.16670545.v1
title: Data Fig 6 and S9

description: Behavioral data Global KO and mHb KO
DOI: 10.6084/m9.figshare.7012421.v2
title: Supplementary File S9 from Integrated human-virus metabolic stoichiometric modelling predicts host-based antiviral targets against Chikungunya, Dengue and Zika viruses.

description: Results from the comparison of gene expression data and the <i>in silico</i> model predictions, for CHIKV, DENV and ZIKV viral infections. Chikungunya virus, CHIKV; Dengue virus, DENV; Zika virus, ZIKV.
DOI: 10.17632/gmtj7tjthx
title: Dataset for water and nitrogen deficit stress detection in soilless tomato crops based on spectral indices

description: The dataset for water and nitrogen deficit stress detection in soilless tomato crops based on spectral indices focuses on analysing data from four experiments to detect water and nitrogen deficits automatically using a classification tree methodology. The sheet "schedule" provides the scheduling information for the nitrogen and water treatments applied to the plants to create deficit conditions. It also includes a timetable and planning details, likely outlining the experimental procedures and timelines.The file integrates key aspects of the research process, from data collection to operational planning.
A sheet named "Data 4Exp." contains the main experimental results, organised into groups based on periods. A total of 186 data samples were randomly split into 80% for training and validation and 20% for testing, as presented in "Data 4Exp. test" sheet. The full description of the methodology followed is presented in the manuscript:
Elvanidi, A., Katsoulas, N., & Kittas, C. (2018). Automation for Water and Nitrogen Deficit Stress Detection in Soilless Tomato Crops Based on Spectral Indices. Horticulturae, 4(4), 47. https://doi.org/10.3390/horticulturae4040047
DOI: 10.17632/mcncpk97ys
title: Data on Land Tenure and Food Security

description: This dataset presents data collected from the household survey in Northern Nigeria to examine land tenure and property rights among smallholder rice farmers and the influence it has on household food security. Data collection was by personal interviews of adult members of the farmers’ households, focusing on the households’ socio-economics, United States Department of Agriculture’- 18 Household Food Security questions for households, land titling status, and land tenure type on farmland cultivated during the 2016/17 farming season.
DOI: 10.17632/wmvd3b9cdp
title: Trends and Impact of Digital Marketing on Consumer Engagement in Sustainable Business Based Fashion E-Commerce: A Bibliometric Approach

description: Trends and Impact of Digital Marketing on Consumer Engagement in Sustainable Business Based Fashion E-Commerce: A Bibliometric Approach Data
DOI: 10.6084/m9.figshare.19838470.v2
title: The Heath Gym Synthetic HIV Dataset

description: ###===###<br> IMPORTANT NOTE:<br> Dear viewers, please consider Version 2.0 of our synthetic ART for HIV dataset. Kuo, Nicholas (2023). The Health Gym v2.0 Synthetic Antiretroviral Therapy (ART) for HIV Dataset. figshare. Dataset. https://doi.org/10.6084/m9.figshare.22827878.v1 The latest version is much more realistic than this current version, <br> especially regarding class imbalanceness and utility for training RL algorithms.<br> Interested viewers may also refer to our preprint for further details. Kuo, Nicholas I., Louisa Jorm, and Sebastiano Barbieri. "Generating Synthetic Clinical Data that Capture Class Imbalanced Distributions with Generative Adversarial Networks: Example using Antiretroviral Therapy for HIV." arXiv preprint arXiv:2208.08655 (2022). <br> ###===###<br> This dataset was generated using the Health Gym generative adversarial network (GAN).<br> <br> The dataset contains viral loads, CD4 counts, and drug regimen information for 8,916 patients with HIV. The dataset is stored in CSV format.<br> <br> Please consult our archived paper for more details:<br> Kuo et al. (2022).<br> The Health Gym: Synthetic Health-Related Datasets for the Development of Reinforcement Learning Algorithms. <em>arXiv preprint arXiv:2203.06369</em>. <br> <br> ###===###<br> 1) Refer to page 3 for the full description of the dataset.<br> 2) Refer to page 13 for the descriptive statistics.<br> 3) Refer to pages 25-28 for the quality assessment.<br> 4) Refer to page 9 for the patient re-identification risk.<br> 5) Refer to pages 4, 5, and 14 on our novel generative adversarial network for generting this synthetic dataset.<br> 6) Also refer to our website: www.healthgym.ai for an overview of the project.<br> <br> ###===###<br> Edited: 12th-July-2023 <br> Date of 2-edits ago: 24th-May-2022
DOI: 10.6084/m9.figshare.27199287.v1
title: Breaking the Capacity Bottleneck of Lithium-Oxygen Batteries through Reconceptualizing Transport and Nucleation Kinetics

description: The source data file for ''Breaking the Capacity Bottleneck of Lithium-Oxygen Batteries through Reconceptualizing Transport and Nucleation Kinetics''
DOI: 10.6084/m9.figshare.29135039.v1
title: data.xlsx

description: A multicenter, retrospective cohort study analyzed 2,645 adult cardiac arrest patients from 208 US ICUs. PaO₂ was measured on multiple occasions within 24 hours of admission. The primary outcome was 28-day all-cause mortality. Generalized additive models and threshold analysis identified inflection points. Conventional cut-off values for PaO₂ were applied for sensitivity analysis. PaO₂ was categorized as hyperoxemia (mild: 100–150 mmHg, moderate: 150–225 mmHg, severe: 225–300 mmHg, extreme: &gt;300 mmHg), normoxemia (60–100 mmHg), or hypoxemia (&lt;60 mmHg). Cox regression and subgroup analyses assessed mortality risk.
DOI: 10.6084/m9.figshare.19361675.v1
title: Worldwide scaling law paper

description: data for worldwide scaling law
DOI: 10.6084/m9.figshare.27916539.v1
title: The impact of intrathecal morphine versus Continuous epidural analgesia on return of bowel function in patients undergoing Bricker: a prospective, randomized controlled trial

description: This study aims to compare the effects of intrathecal morphine (ITM) and continuous epidural analgesia (CEA) on bowel function recovery after Bricker surgery.This study was a prospective, randomized controlled trial that included 72 patients with bladder cancer undergoing elective Bricker surgery, who were randomly assigned to either the ITM group (n=36) or the CEA group (n=36). Postoperatively, patients in both groups received either ITM or CEA for pain management, and postoperative bowel function recovery time, pain scores, PONV, itching, and other indicators were recorded.The ITM group had a significantly longer bowel function recovery time (25.7 (3.4) h) compared to the EA group (20.2 (3.2) h) (P&lt;0.0001). The ITM group had a significantly longer time to first mobilization (23.6 (2.2) h) compared to the EA group (19.0 (3.1) h) (P&lt; 0.0001). The incidence of PONV and itching was significantly higher in the ITM group (34.48%) compared to the CEA group (6.90%) (P=0.0206).CEA effectively controls postoperative pain and promotes bowel function recovery, whereas ITM may prolong the recovery time and lead to a higher incidence of PONV and itching.<br><br>