cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5217958.v1
title: Dataset Search WebApp

description: Despite the fact that extensive list of open datasets are available in catalogues, most of the data publishers still connects their datasets to other popular datasets, such as DBpedia5, Freebase 6 and Geonames7. Although the linkage with popular datasets would allow us to explore external resources, it would fail to cover highly specialized information. Catalogues of linked data describe the content of datasets in terms of the update periodicity, authors, SPARQL endpoints, linksets with other datasets, amongst others, as recommended by W3C VoID Vocabulary. However, catalogues by themselves do not provide any explicit information to help the URI linkage process.Searching techniques can rank available datasets <i>S<sub>I</sub></i> according to the probability that it will be possible to define links between URIs of <i>S<sub>I</sub></i> and a given dataset <i>T</i> to be published, so that most of the links, if not all, could be found by inspecting the most relevant datasets in the ranking. dataset-search is a tool for searching datasets for linkage.
DOI: 10.6084/m9.figshare.5217838
title: Risk Screen of Freshwater Tropical Ornamental Fishes for the Conterminous United States

description: The trade in ornamental fish is increasingly viewed as a major source for the introduction of invasive species into the environment. However, few ornamental fishes are established and widespread in the conterminous United States, and fewer still are thought to cause noticeable environmental impacts. To better evaluate the risk of this pathway, we conducted a risk screen of 34 important freshwater ornamental fish species by using the Fish Invasiveness Screening Kit (FISK) version 2 for the conterminous United States. Screens from three to five independent assessors resulted in categorization of 91–100% of the species as noninvasive. The low climate match of these mostly tropical species largely confines establishment risk to subtropical regions, primarily peninsular Florida, and to isolated thermal refuges (e.g., geothermal springs) in otherwise unsuitable climates. Few data on impacts exist for tropical ornamental fish in the conterminous United States, and there is little evidence for the occurrence of large, long-term effects despite local impacts for a few species. Our results indicate that the freshwater tropical ornamental fish trade is less risky to the conterminous United States than has been concluded in most previous studies. Further risk assessment for management decisions might be required on a regional scale or for localized, high-risk situations. Received November 3, 2016; accepted March 23, 2017 Published online July 18, 2017
DOI: 10.6084/m9.figshare.5217838.v2
title: Risk Screen of Freshwater Tropical Ornamental Fishes for the Conterminous United States

description: The trade in ornamental fish is increasingly viewed as a major source for the introduction of invasive species into the environment. However, few ornamental fishes are established and widespread in the conterminous United States, and fewer still are thought to cause noticeable environmental impacts. To better evaluate the risk of this pathway, we conducted a risk screen of 34 important freshwater ornamental fish species by using the Fish Invasiveness Screening Kit (FISK) version 2 for the conterminous United States. Screens from three to five independent assessors resulted in categorization of 91–100% of the species as noninvasive. The low climate match of these mostly tropical species largely confines establishment risk to subtropical regions, primarily peninsular Florida, and to isolated thermal refuges (e.g., geothermal springs) in otherwise unsuitable climates. Few data on impacts exist for tropical ornamental fish in the conterminous United States, and there is little evidence for the occurrence of large, long-term effects despite local impacts for a few species. Our results indicate that the freshwater tropical ornamental fish trade is less risky to the conterminous United States than has been concluded in most previous studies. Further risk assessment for management decisions might be required on a regional scale or for localized, high-risk situations. Received November 3, 2016; accepted March 23, 2017 Published online July 18, 2017
DOI: 10.6084/m9.figshare.5217754
title: Potential changes in longwave emitted radiation (clear sky only) following detailed vegetation transitions

description: Potential changes in longwave emitted radiation (clear sky only) at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 10 detailed vegetation classes.
DOI: 10.6084/m9.figshare.5217751
title: Potential changes in daytime land surface temperature following detailed vegetation transitions

description: Potential changes in daytime land surface temperature at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 10 detailed vegetation classes.
DOI: 10.6084/m9.figshare.5217748
title: Potential changes in shortwave reflected radiation following broad vegetation transitions

description: Potential changes in shortwave reflected radiation at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 4 broad vegetation classes.
DOI: 10.6084/m9.figshare.5217748.v1
title: Potential changes in shortwave reflected radiation following broad vegetation transitions

description: Potential changes in shortwave reflected radiation at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 4 broad vegetation classes.
DOI: 10.6084/m9.figshare.5217751.v1
title: Potential changes in daytime land surface temperature following detailed vegetation transitions

description: Potential changes in daytime land surface temperature at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 10 detailed vegetation classes.
DOI: 10.6084/m9.figshare.5217754.v1
title: Potential changes in longwave emitted radiation (clear sky only) following detailed vegetation transitions

description: Potential changes in longwave emitted radiation (clear sky only) at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 10 detailed vegetation classes.
DOI: 10.6084/m9.figshare.5217733
title: Potential changes in longwave emitted radiation following broad vegetation transitions

description: Potential changes in longwave emitted radiation at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 4 broad vegetation classes.
DOI: 10.6084/m9.figshare.5217742
title: Potential changes in nighttime land surface temperature following broad vegetation transitions

description: Potential changes in nighttime land surface temperature at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 4 broad vegetation classes.
DOI: 10.6084/m9.figshare.5217745
title: Potential changes in shortwave reflected radiation following detailed vegetation transitions

description: Potential changes in shortwave reflected radiation at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 10 detailed vegetation classes.
DOI: 10.6084/m9.figshare.5217736
title: Potential changes in sensible and ground heat following broad vegetation transitions

description: Potential changes in sensible and ground heat at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 4 broad vegetation classes.
DOI: 10.6084/m9.figshare.5217739
title: Potential changes in longwave emitted radiation (clear sky only) following broad vegetation transitions

description: Potential changes in longwave emitted radiation (clear sky only) at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 4 broad vegetation classes.
DOI: 10.6084/m9.figshare.5217745.v1
title: Potential changes in shortwave reflected radiation following detailed vegetation transitions

description: Potential changes in shortwave reflected radiation at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 10 detailed vegetation classes.
DOI: 10.6084/m9.figshare.5217733.v1
title: Potential changes in longwave emitted radiation following broad vegetation transitions

description: Potential changes in longwave emitted radiation at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 4 broad vegetation classes.
DOI: 10.6084/m9.figshare.5217742.v1
title: Potential changes in nighttime land surface temperature following broad vegetation transitions

description: Potential changes in nighttime land surface temperature at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 4 broad vegetation classes.
DOI: 10.6084/m9.figshare.5217727
title: Potential changes in nighttime land surface temperature following detailed vegetation transitions

description: Potential changes in nighttime land surface temperature at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 10 detailed vegetation classes.
DOI: 10.6084/m9.figshare.5217730
title: Potential changes in longwave emitted radiation following detailed vegetation transitions

description: Potential changes in longwave emitted radiation at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 10 detailed vegetation classes.
DOI: 10.6084/m9.figshare.5217736.v1
title: Potential changes in sensible and ground heat following broad vegetation transitions

description: Potential changes in sensible and ground heat at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 4 broad vegetation classes.
DOI: 10.6084/m9.figshare.5217724
title: Potential changes in daytime land surface temperature following broad vegetation transitions

description: Potential changes in daytime land surface temperature at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 4 broad vegetation classes.
DOI: 10.6084/m9.figshare.5217730.v1
title: Potential changes in longwave emitted radiation following detailed vegetation transitions

description: Potential changes in longwave emitted radiation at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 10 detailed vegetation classes.
DOI: 10.6084/m9.figshare.5217739.v1
title: Potential changes in longwave emitted radiation (clear sky only) following broad vegetation transitions

description: Potential changes in longwave emitted radiation (clear sky only) at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 4 broad vegetation classes.
DOI: 10.6084/m9.figshare.5217718
title: Potential changes in latent heat following broad vegetation transitions

description: Potential changes in latent heat at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 4 broad vegetation classes.
DOI: 10.6084/m9.figshare.5217721
title: Potential changes in latent heat following detailed vegetation transitions

description: Potential changes in latent heat at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 10 detailed vegetation classes.
DOI: 10.6084/m9.figshare.5217727.v1
title: Potential changes in nighttime land surface temperature following detailed vegetation transitions

description: Potential changes in nighttime land surface temperature at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 10 detailed vegetation classes.
DOI: 10.6084/m9.figshare.5217712
title: Potential changes in albedo following broad vegetation transitions

description: Potential changes in albedo at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 4 broad vegetation classes.
DOI: 10.6084/m9.figshare.5217715
title: Potential changes in sensible and ground heat following detailed vegetation transitions

description: Potential changes in sensible and ground heat at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 10 detailed vegetation classes.
DOI: 10.6084/m9.figshare.5217715.v1
title: Potential changes in sensible and ground heat following detailed vegetation transitions

description: Potential changes in sensible and ground heat at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 10 detailed vegetation classes.
DOI: 10.6084/m9.figshare.5217721.v1
title: Potential changes in latent heat following detailed vegetation transitions

description: Potential changes in latent heat at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 10 detailed vegetation classes.
DOI: 10.6084/m9.figshare.5217724.v1
title: Potential changes in daytime land surface temperature following broad vegetation transitions

description: Potential changes in daytime land surface temperature at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 4 broad vegetation classes.
DOI: 10.6084/m9.figshare.5217709
title: Potential changes in albedo following detailed vegetation transitions

description: Potential changes in albedo at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 10 detailed vegetation classes.
DOI: 10.6084/m9.figshare.5217712.v1
title: Potential changes in albedo following broad vegetation transitions

description: Potential changes in albedo at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 4 broad vegetation classes.
DOI: 10.6084/m9.figshare.5217718.v1
title: Potential changes in latent heat following broad vegetation transitions

description: Potential changes in latent heat at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 4 broad vegetation classes.
DOI: 10.6084/m9.figshare.5217652
title: TableS4_AB_nonorm_trinotate_annotation_report.xlsx

description: Annotation details for the Coccinia grandis de novo transcriptome.<br>
DOI: 10.6084/m9.figshare.5217709.v1
title: Potential changes in albedo following detailed vegetation transitions

description: Potential changes in albedo at a spatial resolution of 1 degree and for every month of a climatological year covering 2008-2012 following a vegetation transition amongst 10 detailed vegetation classes.
DOI: 10.6084/m9.figshare.5217652.v1
title: TableS4_AB_nonorm_trinotate_annotation_report.xlsx

description: Annotation details for the Coccinia grandis de novo transcriptome.<br>
DOI: 10.6084/m9.figshare.5217625
title: Assessing and Quantifying Clusteredness: The OPTICS Cordillera

description: This article provides a framework for assessing and quantifying “clusteredness” of a data representation. Clusteredness is a global univariate property defined as a layout diverging from equidistance of points to the closest neighboring point set. The OPTICS algorithm encodes the global clusteredness as a pair of clusteredness-representative distances and an algorithmic ordering. We use this to construct an index for quantification of clusteredness, coined the OPTICS Cordillera, as the norm of subsequent differences over the pair. We provide lower and upper bounds and a normalization for the index. We show the index captures important aspects of clusteredness such as cluster compactness, cluster separation, and number of clusters simultaneously. The index can be used as a goodness-of-clusteredness statistic, as a function over a grid or to compare different representations. For illustration, we apply our suggestion to dimensionality reduced 2D representations of Californian counties with respect to 48 climate change related variables. Online supplementary material is available (including an R package, the data and additional mathematical details).
DOI: 10.6084/m9.figshare.5217625.v1
title: Assessing and quantifying clusteredness: The OPTICS Cordillera

description: This paper provides a framework for assessing and quantifying “clusteredness” of a data representation. Clusteredness is a global univariate property defined as a layout diverging from equidistance of points to the closest neighbouring point set. The OPTICS algorithm encodes the global clusteredness as a pair of clusteredness-representative distances and an algorithmic ordering. We use this to construct an index for quantification of clusteredness, coined the OPTICS Cordillera, as the norm of subsequent differences over the pair. We provide lower and upper bounds and a normalization for the index. We show the index captures important aspects of clusteredness such as cluster compactness, cluster separation and number of clusters simultaneously. The index can be used as a goodness-of-clusteredness statistic, as a function over a grid or to compare different representations. For illustration, we apply our suggestion to dimensionality reduced 2D representations of Californian counties with respect to 48 climate change related variables. Online supplementary material is available (including an R package, the data and additional mathematical details).
DOI: 10.17632/2sf4n8s6f2.1
title: hawgent dynamic mathematics software learning media

description: This learning media is made with hawgent dynamic mathematics software to help students understand math concepts and help teachers to explain math concepts more deeply.
DOI: 10.6084/m9.figshare.5217571
title: Supplementary Material for: Correlating the Genetic and Physical Map of Barley Chromosome 3H Revealed Limitations of the FISH-Based Mapping of Nearby Single-Copy Probes Caused by the Dynamic Structure of Metaphase Chromosomes

description: Genetic maps are based on the recombination frequency of molecular markers which often show different positions in comparison to the corresponding physical maps. To decipher the position and order of DNA sequences genetically mapped to terminal and interstitial regions of barley (<i>Hordeum vulgare</i>) chromosome 3H, fluorescence in situ hybridization (FISH) on mitotic metaphase chromosomes was performed with 16 genomic single-copy probes derived from fingerprinted BAC contigs. Long genetic distances at subterminal regions translated into short physical distances, confirming that recombination events occur more often at distal regions of chromosome 3H. Nonoverlapping FISH signals were frequently obtained for probes with a physical distance of at least 30-60 kb. Only 8% of the analyzed chromosomes showed a symmetric order of FISH signals on both sister chromatids. Due to the dynamic packing of metaphase chromatin, the order of 2 adjacent single-copy signals along the chromosome arms outside the (peri)centromeric region can only reliably be determined if the cytological distance is approximately 3%, corresponding to 21.6 Mb.
DOI: 10.6084/m9.figshare.5217550
title: Metabolomics analysis of rice responses to salinity stress revealed elevation of serotonin, and gentisic acid levels in leaves of tolerant varieties

description: A GC-MS based analytical approach was undertaken to understand the metabolomic responses of seedlings of 2 salt sensitive (Sujala and MTU 7029) and 2 tolerant varieties (Bhutnath, and Nonabokra) of indica rice (<i>Oryza sativa</i> L.) to NaCl induced stress. The 4 varieties responded differently to NaCl treatment with respect to the conserved primary metabolites (sugars, polyols, amino acids, organic acids and certain purine derivatives) of the leaf of rice seedlings. However, there were significant differences in salt induced production of chorismic acid derivatives. Serotonin level was increased in both the salt tolerant varieties in response to NaCl induced stress. In both the salt tolerant varieties, increased production of the signaling molecule gentisic acid in response to NaCl treatment was noticed. Salt tolerant varieties also produced increased level of ferulic acid and vanillic acid. In the salt sensitive varieties, cinnamic acid derivatives, 4-hydroxycinnamic acid (in Sujala) and 4-hydroxybenzoic acid (in MTU 7029), were elevated in the leaves. So increased production of the 2 signaling molecules serotonin and gentisic acid may be considered as 2 important biomarker compounds produced in tolerant varieties contributing toward NaCl tolerance.
DOI: 10.6084/m9.figshare.5217556
title: A Conjugate Model for Dimensional Analysis

description: Dimensional analysis (DA) is a methodology widely used in physics and engineering. The main idea is to extract key variables based on physical dimensions. Its overlooked importance in statistics has been recognized recently. However, most literature treats DA as merely a preprocessing tool, leading to multiple statistical issues. In particular, there are three critical aspects: (a) the nonunique choice of basis quantities and dimensionless variables; (b) the statistical representation and testing of DA constraints; (c) the spurious correlations between post-DA variables. There is an immediate need for an appropriate statistical methodology that integrates DA and the quantitative modeling. In this article, we propose a power-law type of “DA conjugate” model that is useful for incorporating dimensional information and analyzing post-DA variables. Adapting the similar idea of “conjugacy” in Bayesian analysis, we show that the proposed modeling technique not only produces flexible and effective results, but also provides good solutions to the above three issues. A modified projection pursuit regression analysis is implemented to fit the additive power-law model. A numerical study on ocean wave speed is discussed in detail to illustrate and evaluate the advantages of the proposed procedure. Supplementary materials for this article are available online.