cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7925/drs1.ucdlib_32099
title: 40 William Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed early 19th century.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32102
title: 41-42 William Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground, constructed early 19th century.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.1rd58/1
title: Romero-Haro & Alonso-Alvarez 10-3-2014 repository

description: Excel file containing the variables used in the analyses with descriptions of each variable as comments inserted in the cell that defines each variable name.
DOI: 10.5061/dryad.1rd58/2
title: Romero-Haro & Alonso-Alvarez 10-3-2014 REPEATED repository

description: Excel data file containing body mass and tarsus lengths of the birds in the study from the nestling age to adulthood. The file was created to perform the analyses by means of repeated measures mixed models, that is, including the individual identity as a random factor.
DOI: 10.5061/dryad.21f62/28
title: TF_with_outgroup

description: TF phased alignment of longest non-recombining blocks with outgroup (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/29
title: POLA1_with_outgroup

description: POLA1 phased alignment of longest non-recombining blocks with outgroup (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/30
title: GRIA3_with_outgroup

description: GRIA3 phased alignment of longest non-recombining blocks with outgroup (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/31
title: SRY_with_outgroup

description: SRY alignment with outgroup (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/32
title: CYTB_with_outgroups

description: CYTB alignment with outgroups (see GenBank accession numbers in Sup. Table 1).
DOI: 10.5061/dryad.21f62/42
title: CYTB_Lepus_spp

description: CYTB alignment of haplotypes obtained in this work and other Lepus species available in GenBank (see Sup. Figure 4).
DOI: 10.5061/dryad.5nm01/1
title: NZ Giraffe weevil measurements_raw data

description: This file contains all of the body and weapon size measurements of Lasiorhynchus barbicornis from eleven different locations around the North Island of New Zealand.
DOI: 10.5061/dryad.6g2f8/1
title: DataDmitriew&BlanckenhornJEB12488 2014
DOI: 10.5061/dryad.72p9f/1
title: Fig.2.3.4.Tab.1.App.B.C.Mature.Comms.xlsx

description: These data are were used to generate Figures 2, 3 and 4 (and the analyses in Table 1 and Appendices B and C), which describe mature, extant communities on wave-exposed and sheltered rocky intertidal shores in the Gulf of Maine.
DOI: 10.5061/dryad.72p9f/2
title: Fig.5.App.D.Consumer.Dens

description: These data were used to generate Figure 5 (and the analyses in Appendix D), which portray consumer densities on wave-exposed and sheltered rocky intertidal shores in the Gulf of Maine.
DOI: 10.5061/dryad.72p9f/3
title: Fig.6.8.Tab.2.App.E.Manip.Recov

description: These data were used to generate Figures 6 and 8 (and the analyses in Table 2 and Appendix E), which portray species recovery after disturbance in the presence and absence of consumers on wave-exposed (Fig. 6) and sheltered (Fig. 8) rocky intertidal shores in the Gulf of Maine.
DOI: 10.5061/dryad.72p9f/4
title: Fig.7.App.F.Barn.Recruit

description: These data were used to generate Figure 7 (and the analyses in Appendix F), which portrays barnacle recruitment on wave-exposed and sheltered rocky intertidal shores in the Gulf of Maine.
DOI: 10.5061/dryad.72p9f/5
title: Fig.9.App.G.Asco.Recov

description: These data were used to generate Figure 9 (and the analyses in Appendix G), which portray long-term Ascophyllum nodosum recovery on wave-exposed and sheltered rocky intertidal shores in the Gulf of Maine.
DOI: 10.5061/dryad.75t05/1
title: dataset

description: See ReadMe file for details.
DOI: 10.5061/dryad.75t05/2
title: phylogeny

description: Phylogeny coded in Nexus format.
DOI: 10.5061/dryad.75t05/3
title: R script

description: Example R script for Table 4b and Figure 4
DOI: 10.5061/dryad.96g44/9
title: Species.Richness

description: This Rdata file contains an object “richness” that contains abundance counts for each major species collected during random habitat surveys (HabitatSurvey.Rdata). Species richness was calculated from this matrix. Used for Table S7. Blk.mangrove = Black Mangrove (Avicennia germinans)Buttonwood = Conocarpus erectusCedar = Eastern Red Cedar (Juniperus virginiana)Cpalm = Cabbage Palm (Sabal palmetto)Ox-eye = Sea Ox-eye Daisy (Borrichia frutescens)Pepper = Brazilian Pepper (Schinus terebinthifolius)Vacc = Vaccinium sp.Wax-myrt = Wax Myrtle (Morella cerifera)Wt. mangrove = (Laguncularia racemosa)
DOI: 10.5061/dryad.c47vc/1
title: Dalrymple et al. BJLS. data

description: Reflectance spectra and colouration summary statistics
DOI: 10.5061/dryad.c4s8s/10
title: script_cooccurence_analysis

description: Identified non-random co-occurrences and exclusions among all six datasets OTUs.
DOI: 10.5061/dryad.c4s8s/11
title: script_phyla_network

description: Identified non-random co-occurrences and exclusions among OTUs grouped at phylum level.
DOI: 10.5061/dryad.c4s8s/5
title: script_alternative_clustering_methods_cer

description: Alternative methods to cluster sequences into OTUs.
DOI: 10.5061/dryad.c4s8s/6
title: script_threshold_cer

description: Example analysis to determine the clustering threshold approaching species level for a new barcoding marker.
DOI: 10.5061/dryad.c4s8s/7
title: script_fig_cer

description: Produce figure output of the previous script.
DOI: 10.5061/dryad.c4s8s/8
title: script_diversity_statistics

description: Main statistical analyses of diversity patterns.
DOI: 10.5061/dryad.c4s8s/9
title: soil_parameters

description: Additional measured soil parameters.
DOI: 10.5061/dryad.c7v41/1
title: sample genotypes

description: Microsatellite (11 loci) genotype information on the 169 individual tigers from Central India
DOI: 10.5061/dryad.jf29v/1
title: 01 - Output files from Picard "CalculateHsMetrics"

description: Raw coverage estimate per subtarget (aka "baits") per individual estimated by the Picard tool "CalculateHsMetrics". For each individual, two files are available. 1) A "*.HsMetrics" file containing the global Hsmetrics information (see http://picard.sourceforge.net/picard-metric-definitions.shtml#HsMetrics). 2) A "*.HsMetrics.Targets" file containing the coverage information per subtarget.
DOI: 10.5061/dryad.jf29v/2
title: 02 - R matrix of normalized read count data

description: Matrix of normalized read count data in R format. Few formating steps have been performed here (see main MBE paper and script "./01_GetData/script.R" in the pipeline). 1) Normalisation of the read counts. 2) Remove targets with more than 5% of reads with PHRED score&lt;10. Note that these data are those BEFORE the squared root and polynomial transformations.
DOI: 10.5061/dryad.jf29v/3
title: 03 - Squared root and transformed read count data

description: R list resulting from the script  "./02_PreProcessing/script.R" in the pipeline). This list contain several sets of data and information including the matrix of squared root and polynomially transformed read count data (i.e. the data used in the estimation of CNV).
DOI: 10.5061/dryad.mj5m8/1
title: Dryad

description: This excel workbook contains all the data used for analyses in the manuscript. The first worksheet "All" was used for estimating variance components and subsequent analyses involving these metrics. The remaining worksheets were used for the pairwise environment fixed effects ANOVAs. Raw data is indicated by a lower case "o" after the trait abbreviation.
DOI: 10.5061/dryad.nf043/1
title: Data_MacNultyetalPLOSONE

description: Counts of the number of times wolves in different-sized hunting groups attempted and succeeded to attack and capture bison in Yellowstone National Park, 1996-2013. These are the frequency data presented in Figure 2 of the article.
DOI: 10.5061/dryad.p1s20/1
title: ID_Phen

description: Individual inbreeding depression values and their phenotypes associated to each plant.
DOI: 10.5061/dryad.p1s20/2
title: Homozi_Em

description: Individual homozygous values and their phenotypes associated in E. mediohispanicum
DOI: 10.5061/dryad.pt0gh/1
title: Microsatellite_genotypes_Plecotus_austriacus_Razgour_etal_2014

description: Microsatellite genotypes of the Plecotus austriacus samples included in the study, divided into the main geographical population clusters.
DOI: 10.5061/dryad.q72q4/1
title: bird-diversity-data

description: The file contains four different measures of bird diversity for each grid cell of the study area calculated for breeding and wintering distributions separately: 1) the total number of species (i.e. taxonomic richness), 2) the number of IUCN red list species, 3) phylogenetic richness calculated as the sum of branch lengths between root and tips for the species in a community, 4) phylogenetic distinctiveness calculated as the sum of all branch lengths connecting two species averaged across all species in a community. See also the ReadMe file.
DOI: 10.5061/dryad.s0948/1
title: Survival data in response to heat shocks in populations of B. tabaci from Colombian Southwest and Caribbean

description: Here are the data for survival of B. tabaci after heat shocks performed at two treatments: Basal tolerance (45°C: 45°C/1h and then a recovery at 25°C/1h) and induced treatment (40-45°C: 40-45°C/1h, then 40°C/1h and then a recovery time at 25°C/1h). Survival was measured from groups of 10 adults (males and females). These data were assessed from isofemales of B. tabaci belonging to nine populations: six from the Southwest and three in the Caribbean region in Colombia.
DOI: 10.5061/dryad.s0948/2
title: Fecundity data in response to heat shocks in populations of B. tabaci from Colombian Southwest and Caribbean

description: Here are the data for fecundity of B. tabaci after heat shocks performed at two treatments: Basal tolerance (45°C: 45°C/1h and then a recovery at 25°C/1h) and induced treatment (40-45°C: 40-45°C/1h, then 40°C/1h and then a recovery time at 25°C/1h). Couples (males and females) were lead to mate for seven days and then the number of eggs was count. These data were assessed from isofemales of B. tabaci belonging to nine populations: six from the Southwest and three in the Caribbean region in Colombia.
DOI: 10.5061/dryad.s3630/1
title: Dataset for Trivers et al. (2014) PLOS ONE

description: Excel file
DOI: 10.5061/dryad.vp743/5
title: figure 5 data

description: Data for the figures for eggs and weight per period. Measurement, food treatment (food_trt) period, weight and eggs are given.
DOI: 10.5061/dryad.vp743/6
title: figure 6 data

description: Data for time and food dependent response of egg number. Measurement, food treatment, current food level, weight, number of eggs produced and lifespan per individual are given.
DOI: 10.7925/drs1.ucdlib_32108
title: 44 William Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1760.
description: Dublin City Council, Record of Protected Structures (2010), no. 8582
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32111
title: 46 William Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 4 levels above ground, constructed 1760.
description: Dublin City Council, Record of Protected Structures (2010), no. 8584
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32117
title: 48 William Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 4 levels above ground, constructed 1760.
description: Dublin City Council, Record of Protected Structures (2010), no. 8586
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32120
title: 49 William Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1760.
description: Dublin City Council, Record of Protected Structures (2010), no. 8587
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32123
title: 50 William Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1790.
description: Dublin City Council, Record of Protected Structures (2010), no. 8588
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32126
title: 51 William Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1790.
description: Dublin City Council, Record of Protected Structures (2010), no. 8589
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32129
title: 52 William Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1770.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32132
title: 53 William Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1760.
description: Dublin City Council, Record of Protected Structures (2010), no. 8590
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_32135
title: 54 William Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1760.
description: Dublin City Council, Record of Protected Structures (2010), no. 8591
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.20s7c/1
title: 299/33 dataset

description: Aligned fasta file of the 299/33 dataset
DOI: 10.5061/dryad.20s7c/2
title: 185/33 dataset

description: Aligned fasta file for 185/33 dataset
DOI: 10.5061/dryad.20s7c/3
title: 185/31 dataset

description: Aligned fasta file for 185/31 dataset
DOI: 10.5061/dryad.20s7c/4
title: 165/20 dataset

description: Aligned fasta file for 165/20 dataset
DOI: 10.5061/dryad.3r8p4/1
title: Program to compute protein abundance in mass spectrometry

description: The program is to compute protein abundance from spectral counts from mass spectrometry. It computes protein abundance from unique peptides and hared peptides among proteins considered. It is also available at http://kiharalab.org/RACalculator/
DOI: 10.5061/dryad.3rq51/1
title: ALLalignwithcichlidcali_MTDNA

description: tre file based on analysis of all mtDNA data and all calibrations
DOI: 10.5061/dryad.3rq51/2
title: Prunedalignwithcichlidcali_MTDNA

description: newick file tree of divergence times estimated with pruned mtDNA alignment and all calibrations
DOI: 10.5061/dryad.3rq51/3
title: xmlDornburgPruned_ALLmt

description: xml file used in this study for the pruned mtDNA alignment
DOI: 10.5061/dryad.3rq51/4
title: xmlDornburg_all_mt

description: xml file used to generate divergence times using all mtDNA and all calibrations
DOI: 10.5061/dryad.3rq51/5
title: All_calisNuc_All

description: Tree file from beast analysis of all nDNA data with all calibrations
DOI: 10.5061/dryad.4rt17/1
title: Environmental and morphological data for all 43 populations

description: Site means for all relevant environmental and morphological variables examined in the study.
DOI: 10.5061/dryad.5q65k/1
title: MATLAB Statistics for Gene Expression Data

description: This file contains the results of the full model and the individual contrasts, for each of 14 208 genes. The first six worksheets provide data from the full model: p-values for each gene for origin, temperature, population(origin), and the interaction term, q-values for the same, SSQ and degrees of freedom for the same, coefficients for each origin, temperature, population(origin), and interaction, and a summary of the significantly expressed genes for origin alone, temperature alone, both origin and temperature, and the interaction term, under p-value of 0.05 and q-values of 0.05 and 0.1.The remaining three worksheets contain a summary of the number of genes differentially expressed by temperature under the independent contrasts, including the total number, freshwater total, marine total, both marine and freshwater, only freshwater, and only marine, for p-value of 0.05 and q-values of 0.05 and 0.1. p-values and q-values for freshwater and marine contrasts follow.
DOI: 10.5061/dryad.5q65k/2
title: Code used for MATLAB

description: This file contains the code used to generate the data for the marine and freshwater stickleback contrasts.
DOI: 10.5061/dryad.5q65k/3
title: Normalized and Filtered Gene Expression Data

description: This file contains the LIMMA output for normalized and filtered microarray data. This data was then used in MATLAB. Each column contains a new microarray. Rows 1-7 provide descriptive data for each microarray, including population (Hoggan Lake freshwater, HLF; Cranby Lake freshwater, CLF; Oyster Lagoon marines, OLM; Little Campbell River marines, LCM), temperature (7 or 22 degrees C), Origin (marine, freshwater), the tank number the fish was raised in, sex of the fish, the microarray slide the microarray was on, and the microarray filename.
DOI: 10.5061/dryad.5q65k/4
title: LIMMA Supplemental Results

description: LIMMA output file using all 20 021 genes present on the microarray, as described in the supplemental information. Within-population contrasts were performed. Coefficients for all four populations, and associated t-statistics and p-values, along with F-statistics and p-values, are provided. Columns T,U,V,W: 0 = not significantly influenced by temperature; 1 = up-regulated at 22 degrees C; -1 = up-regulated at 7 degrees C. The microarray probe name and its associated Ensembl transcript ID follow.