cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17608/k6.auckland.25106468.v1
title: <b>Identifying ATP evoked responses from the carotid body in spontaneously hypertensive rats</b>

description: In spontaneously hypertensive rats (SHR), the carotid body (CB) is enlarged. Functionally, ATP acting on P2X3 receptors expressed in petrosal chemoreceptive afferent neurones underpins chemoreflex sympathetic overactivation (i.e., hyperreflexia). As the exact mechanisms remain elusive, the following experiments were performed to investigate the generation, breakdown and physiological responses of adenosine 5’-triphosphate (ATP) in the CB of SHRs: First, we quantified the amount of ATP released from CBs of Wistar and SHRs (3-5 weeks old) in vitro; second, we carried out quantitative analysis of gene expression of six enzymes, which are all involved with the extracellular metabolism of ATP Ectonucleotide pyrophosphatase/phosphodiesterase, Enpp1-3; Ectonucleoside triphosphate diphosphohydrolase, Entpd2-3; and ecto-5′-nucleotidase, Nt5e). Second, we quantified the gene expression for tyrosine hydroxylase (Th), Pannexin 1 channel (Panx 1), and the gene encoding, hypoxia-inducible factor-2α (HIF-2α; Epas1). Third, using live cell confocal imaging of ATP depletion, we quantified the amount of ATP released from dissociated glomus cells in both strains. Lastly, we used the working heart-brainstem preparation for functional analysis of CB-evoked responses in both strains. We found, that the CBs of SHRs release a greater amount of ATP relative to normotensive rats (P&lt;0.05). This was associated with the upregulation of enzyme transcripts, Enpp2-3, Nt5e, and Th (p&lt;0.05). Live cell confocal imaging did not show any difference in ATP depletion between both strains, thus indicating that the latter is mediated by a greater number of glomus cells in the hyperplasic CB. The latter was accompanied by upregulation of Epas1, which is known to mediate glomus cell lineage expansion in models of chronic sustained hypoxia. focal application to the CB of either ATP or α, β-methylene ATP produced hyperpnoea and sympathetic activation. In SHRs, α, β-methylene ATP microperfusion produced an enhanced sympathoexcitation relative to Wistars rats. In addition, P2X3 receptor antagonism produced a greater reduction in CB sensory firing evoked by cyanide in SHR. Thus, P2X3 receptor antagonism remains an attractive option for lower sympathetic activity in CB-mediated cardiovascular disease.
DOI: 10.15468/dl.z7mnjp
title: Occurrence Download

description: A dataset containing 800 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year is greater than or equal to 1970",
 "TaxonKey is Bactrocera cucurbitae (Coquillett, 1899)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 800 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136114-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vtueuu
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paspalum limbatum Henrard"
 ]
}

 The dataset includes 63 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182381-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4erkzj
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echium amoenum Fisch. & C.A.Mey."
 ]
}

 The dataset includes 105 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186686-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a4996u
title: Occurrence Download

description: A dataset containing 971 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Vascular Plants from Praia da Vitória (Terceira, Azores, Portugal)"
 ]
}

 The dataset includes 971 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136120-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ijilhd
title: Occurrence Download

description: A dataset containing 1999 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "DecimalLatitude is greater than 39.2112987336838",
 "DecimalLatitude is less than 39.6906616138739",
 "DecimalLongitude is greater than -78.0140712591133",
 "DecimalLongitude is less than -77.3624336710098"
 ]
}

 The dataset includes 1999 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000182-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gwntu6
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echium bethencourtii A.Santos"
 ]
}

 The dataset includes 31 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186694-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lhamsa
title: Occurrence Download

description: A dataset containing 9099428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9099428 records from 1167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000182-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.18739303.v1
title: Additional file 5 of Characterization and regulation mechanism analysis of ubiquitin-conjugating family genes in strawberry reveals a potential role in fruit ripening

description: Additional file 5: Table S4. Ka, Ks and Ka/Ks of paralogous gene pairs of UBC genes among three Rosaceae species.
DOI: 10.6084/m9.figshare.18739297
title: Additional file 3 of Characterization and regulation mechanism analysis of ubiquitin-conjugating family genes in strawberry reveals a potential role in fruit ripening

description: Additional file 3: Table S2. Collinear pairs identified between Arabidopsis and strawberry.
DOI: 10.5281/zenodo.10539135
title: Molecular phylogeny and biogeography of the aquatic dance fly subfamily Clinocerinae (Diptera: Empididae)

description: Supplementary Data for:

Molecular phylogeny and biogeography of the aquatic dance fly subfamily Clinocerinae (Diptera: Empididae) 

Tanja Vojvoda Zeljko1, Martina Pavlek1, Emma Wahlberg2, Bradley J. Sinclair3, Marija Ivković4,*

1Ruđer Bošković Institute, Bijenička cesta 54, Zagreb, Croatia; 2Department of Zoology, Swedish Museum of Natural History, Stockholm, Sweden; 3Canadian National Collection of Insects and Canadian Food Inspection Agency, Ottawa, Canada; 4Division of Zoology, Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia

 *Correspondence: Marija Ivković, Division of Zoology, Department of Biology, Faculty of Science, University of Zagreb, Horvatovac 102A, 10000 Zagreb, Croatia. E-mail: marija.ivkovic@biol.pmf.hr

This dataset is provided to enable replication of the phylogenetic analysis presented in the research article “Molecular phylogeny and biogeography of the aquatic dance fly subfamily Clinocerinae (Diptera: Empididae)”

1. Content and Description for the files used in the maximum – likelihood analysis:



AlignmentFile.phy: This file contains the concatenated nucleotide sequences used in the study.

Command_IqTree.txt: A text file detailing the commands executed in IQ-TREE for reproducing the phylogenetic analysis.

Input_For_Partitions.txt: Contains information used to define partitions in the phylogenetic analysis, corresponding to different codon positions.

Note.txt: Supplementary comments regarding the analysis or dataset.

Partitions.txt.best_scheme.nex: Nexus file containing the best partitioning scheme as determined by ModelFinder within IQ-TREE, specifying how the dataset was divided into subsets for phylogenetic analysis.

Partitions.txt.best_scheme.nex.best_model.nex: Nexus file detailing the best-fit evolutionary model for each partition identified by ModelFinder.

Partitions.txt.best_scheme.nex.log: Log file documenting the progress and results of the IQ-TREE execution.

Partitions.txt.best_scheme.nex.treefile: The final tree file produced by IQ-TREE, representing the best-scoring maximum likelihood phylogenetic tree.


2. Content and Description for the files used in the Bayesian inference analysis:



Clinocer_alignm.nex - This file contains the concatenated nucleotide alignment used for Bayesian phylogenetic analysis with MrBayes. The file can be used to load it into MrBayes to initiate the Bayesian inference analysis.

MrBayesRun0.pbs – a PBS script used to submit MrBayes analysis job to a high-performance computing cluster using the PBS queuing system. It includes a simple command for loading necessary modules, executing MrBayes, and specifying computational resources.

Clinocer_alignm.con.tre - The final tree file produced by MrBayes
DOI: 10.5281/zenodo.10539136
title: Molecular phylogeny and biogeography of the aquatic dance fly subfamily Clinocerinae (Diptera: Empididae)

description: Supplementary Data for:

Molecular phylogeny and biogeography of the aquatic dance fly subfamily Clinocerinae (Diptera: Empididae) 

Tanja Vojvoda Zeljko1, Martina Pavlek1, Emma Wahlberg2, Bradley J. Sinclair3, Marija Ivković4,*

1Ruđer Bošković Institute, Bijenička cesta 54, Zagreb, Croatia; 2Department of Zoology, Swedish Museum of Natural History, Stockholm, Sweden; 3Canadian National Collection of Insects and Canadian Food Inspection Agency, Ottawa, Canada; 4Division of Zoology, Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia

 *Correspondence: Marija Ivković, Division of Zoology, Department of Biology, Faculty of Science, University of Zagreb, Horvatovac 102A, 10000 Zagreb, Croatia. E-mail: marija.ivkovic@biol.pmf.hr

This dataset is provided to enable replication of the phylogenetic analysis presented in the research article “Molecular phylogeny and biogeography of the aquatic dance fly subfamily Clinocerinae (Diptera: Empididae)”

1. Content and Description for the files used in the maximum – likelihood analysis:



AlignmentFile.phy: This file contains the concatenated nucleotide sequences used in the study.

Command_IqTree.txt: A text file detailing the commands executed in IQ-TREE for reproducing the phylogenetic analysis.

Input_For_Partitions.txt: Contains information used to define partitions in the phylogenetic analysis, corresponding to different codon positions.

Note.txt: Supplementary comments regarding the analysis or dataset.

Partitions.txt.best_scheme.nex: Nexus file containing the best partitioning scheme as determined by ModelFinder within IQ-TREE, specifying how the dataset was divided into subsets for phylogenetic analysis.

Partitions.txt.best_scheme.nex.best_model.nex: Nexus file detailing the best-fit evolutionary model for each partition identified by ModelFinder.

Partitions.txt.best_scheme.nex.log: Log file documenting the progress and results of the IQ-TREE execution.

Partitions.txt.best_scheme.nex.treefile: The final tree file produced by IQ-TREE, representing the best-scoring maximum likelihood phylogenetic tree.


2. Content and Description for the files used in the Bayesian inference analysis:



Clinocer_alignm.nex - This file contains the concatenated nucleotide alignment used for Bayesian phylogenetic analysis with MrBayes. The file can be used to load it into MrBayes to initiate the Bayesian inference analysis.

MrBayesRun0.pbs – a PBS script used to submit MrBayes analysis job to a high-performance computing cluster using the PBS queuing system. It includes a simple command for loading necessary modules, executing MrBayes, and specifying computational resources.

Clinocer_alignm.con.tre - The final tree file produced by MrBayes
DOI: 10.6084/m9.figshare.18739317.v1
title: Additional file 9 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regeneration

description: Additional file 9: Table S8. Primers used for qRT-PCR and plasmid construct.
DOI: 10.6084/m9.figshare.18739314
title: Additional file 8 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regeneration

description: Additional file 8: Table S7. phenoype analysis of the cheRNA T-DNA insertion mutants.
DOI: 10.6084/m9.figshare.18739296
title: Additional file 4 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regeneration

description: Additional file 4: Table S3. Public datasets used in this study.
DOI: 10.6084/m9.figshare.14544853
title: Additional file 9 of Comparative transcriptomic analysis reveals an association of gibel carp fatty liver with ferroptosis pathway

description: Additional file 9: Table S7 Aquaculture conditions in the Luo-Fu Lotus Farm. Lists of conditions include Water temperature (WT), dissolved oxygen (DO), total nitrogen (TN), ammonia (NH4-N), nitrate (NO3-N), nitrite (NO2-N), and total phosphorus (TP).
DOI: 10.6084/m9.figshare.13498082.v1
title: Additional file 1 of A pan-kidney cancer study identifies subtype specific perturbations on pathways with potential drivers in renal cell carcinoma

description: Additional file 1: Table S1. Differentially expressed genes within pathways.
DOI: 10.6084/m9.figshare.13498082
title: Additional file 1 of A pan-kidney cancer study identifies subtype specific perturbations on pathways with potential drivers in renal cell carcinoma

description: Additional file 1: Table S1. Differentially expressed genes within pathways.
DOI: 10.6084/m9.figshare.18739494.v1
title: Additional file 3 of Geometric morphology and population genomics provide insights into the adaptive evolution of Apis cerana in Changbai Mountain

description: Additional file 3.
DOI: 10.6084/m9.figshare.18739317
title: Additional file 9 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regeneration

description: Additional file 9: Table S8. Primers used for qRT-PCR and plasmid construct.
DOI: 10.58131/es1r-5y81/a7pr3q/vj1ynx
title: Ensayo dataset.xlsx

description: :unav
DOI: 10.6084/m9.figshare.18739290.v1
title: Additional file 2 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regeneration

description: Additional file 2: Table S1. Sequencing information.
DOI: 10.58131/es1r-5y81/a7pr3q
title: Linea de investigación historia ambiental

description: Ensayo cargue de datos de la linea de de historia ambiental.
DOI: 10.58131/es1r-5y81/a7pr3q/vkjhto
title: Ensayo 2.xlsx

description: :unav
DOI: 10.6084/m9.figshare.18739290
title: Additional file 2 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regeneration

description: Additional file 2: Table S1. Sequencing information.
DOI: 10.25549/examiner-m24321
title: Shooting in Costa Mesa, 1960

description: 1 image. Shooting in Costa Mesa, 15 August 1960. Chief Art McKenzie (with rifle used by John Myers) after shooting up apartment; Mrs. James Lewallen (next door neighbor); Wayne Lewallen -- 4 years. ; Caption slip reads: "Photographer: Bob Davis. Date: 1960-08-15. Assignment: Shooting in Costa Mesa. Special instructions: 4 x 4 royal pan. 2 shots: Chief Art McKenzie, with rifle used by John Myers, 23, after shooting up apratment [sic], then himself in head, non-fatal... Mrs. James Lewallen, holds son, Wayne, 4, after they were routed from bed by shots and teargas, next door neighbor looking at hole in window where teargas was fired in."
DOI: 10.25549/examiner-m24426
title: West Hollywood incorporation map, 1960

description: 1 image. West Hollywood incorporation map, 9 June 1960. Rudy Dahl (with map of West Hollywood). ; Caption slip reads: "Photographer: Snow. Date; 06-09. Reporter: Farrell. Assignment: West Hollywood incorporation. special instructions: Monday. 27-28: Rudy Dahl with map of West Hollywood."
DOI: 10.25549/examiner-m24402
title: Strange animal, 1960

description: 1 image. Strange animal, 15 June 1960. Lars Hansen (with strange animal he found in his patio). ; Caption slip reads: "Photographer: Paegel. Date: 1960-06-15. Reporter: Farrell. Assignment: Strange animal. Special instructions: Monday. Actor Lars Hansen and animal which he found in his patio.
DOI: 10.25549/examiner-m24373
title: Brazilian, 1960

description: 1 image. Brazilian, 18 August 1960. Reverend Gustav Hardt (head of Brazilian Agriculture Project). ; Caption slip reads: "Photographer: Rinquist. Date: 1960-08-18. Reporter: Cowles. Assignment: Brazilian. Rev. Gustav Hardt, head of Brazilian Agriculture Project."
DOI: 10.25549/examiner-m24417
title: Navy P.I.O. (Public Information Offricer), 1960

description: 1 image. Navy P.I.O. (Public Information Officer), 18 August 1960. Lieutenant Commander Frank Coghlan. ; Caption slip reads: "Photographer: Snow. Date: 08-18. Assignment: Navy P.I.O. Special instructions: Sunday. Lt. Cmdr. Frank Coghlan."
DOI: 10.25549/examiner-m24383
title: Shillelagh presentation, 1960

description: 1 image. Shillelagh presentation, 18 August 1960. Colonel Paul Scordas (Commanding Officer of Los Angeles Ordnance District, United States Army), receives Shillelagh; Gerald J. Lynch (presenting Shillelagh), Vice president, Ford Motor Company; Roy P. Jackson (General Operations Manager of Aeronutronic's Tactical Weapon Systems Operations). (Handout). ; Supplementary material reads: "Shillelagh presentation -- Col. Paul Scordas, commanding officer of the Los Angeles Ordnance District, U.S. Army, receives a genuine Irish shillelagh from Gerald J. Lynch (left), vice president of Ford Motor Company's Defense products group and general manager of the Company's Aeronutronic Division, symbolizing the lethal new Army Shillelagh guided missile system under development by Aeronutronic. Looking on is Roy P. Jackson, (right), general operations manager of Aeronujtronic's Tactical Weapon Systems Operations which has responsibility for the Shillelagh program. From: The News Bureau, Aeronutronic Division, Ford Motor Company, Ford Road/Newport Beach, Calif., ORiole 5-1234, Ext. 1236."
DOI: 10.25549/examiner-m24346
title: Polio meeting, 1960

description: 1 image. Polio meeting, 18 August 1960. Dr. K.H. Sutherland (Chief Deputy, County Health Officer); Robert A. Wilkinson (National foundation Vice Chairman); Dr. Leo Tepper (Medical Director, Los Angeles City Health Department). ; Caption slip reads: "Photographer: Lou Mack. Date: 1960-08-18. Reporter: Boynoff. Assignment: Polio meeting. 31-32. L/r, standing: Dr. K.H. Sutherland, Ch. Dep., County Health Officer; seated: Robert A. Wilkinson, National Foundation Vice Chairman & Dr. Leo Tepper, Medical Director, Los Angeles City Health Dept."
DOI: 10.25549/examiner-m24361
title: Suit over drink-stained dress, 1960

description: 1 image. Suit over drink-stained dress, 18 August 1960. Marie McDonald (with the dress). ; Caption slip reads: "Photographer: Glickman. Date: 1960-08-18. Reporter: Glickman. Assignment: Marie McDonald and drink-stained dress."
DOI: 10.25549/examiner-m24388
title: Post position contest winner, 1960

description: 1 image. Post position contest winner, 18 August 1960. Mrs. Ruth Mosher (winner of $3,158). ; Caption slip reads: "Photographer: Lapp. Date: 1960-08-18. Assignment: Gen. Prom., Post position. Special instructions: Send print to Photo Ed. 61-62: Mrs. Ruth Mosher, winner of $3158.00 in post position. (For Friday's paper)."
DOI: 10.25549/examiner-m24395
title: Car into pole at 23rd Street and San Pedro Street, 1960

description: 1 image. Car into pole at 23rd Street and San Pedro Street, 18 August 1960. Caption slip reads: "Photographer: Snow. Date: 08-18. Reporter: Mann. Assignment: Code 26. 105-106: Car into pole -- 23rd & San Pedro."
DOI: 10.25549/examiner-m24319
title: Sheriff's rodeo advance, 1960

description: 1 image. Sheriff's rodeo advance, 18 August 1960. Ray York (Jockey with mule he will ride in Sheriff's rodeo); Jayne Mansfield (Rodeo queen). (Handout). ; Supplementary material reads: "American Airlines photo. Jockey Ray York, just off a 600 mile-per-hour American Airlines jet from New York, tries the saddle of six-mile-per-hour mule he'll ride in race at Sheriff's Rodeo on Sunday at Coliseum. Actress Jayne Mansfield, rodeo queen, also met jockey on arrival in Los Angeles."
DOI: 10.25549/examiner-m24325
title: Lester Wagner (Travelers Aid representative), 1960

description: 1 image.  Lester Wagner (Travelers Aid representative), 18 August 1960. Lester Wagner (Travelers Aid representative); Ai Rau So (Korean orphan). (Handout).
DOI: 10.25549/examiner-m24317
title: Rape and burglary suspect in jail, 1960

description: 1 image. Rape and burglary suspect in jail, 18 August 1960. Joseph Goodman -- 39 years (face hidden) suspect; Sergeant William Stambler. ; Caption slip reads: "Photographer: Tompkins. Date: 1960-08-18. Reporter: Tompkins. Assignment: Rape and burglary suspect at WLA jail. 70-71: Armed robbery and rape suspect Joseph Goodman -- 39 -- hides from camera at WLA Police Station. Other man in pic. is Detective Sgt. William Stambler."
DOI: 10.25549/examiner-m24384
title: Register to vote, 1960

description: 1 image. Register to vote, 18 August 1960. Mayor Norris Poulson; Richard Richards (State Senator); Camille Connor; Wendy Howard. (Handout).
DOI: 10.25549/examiner-m24364
title: National Association of Employment Agencies, 1960

description: 1 image. National Association of Employment Agencies, 18 August 1960. Mrs. Vera Sugg (of London); Miss Helen McCarthy (of Los Angeles). ; Caption slip reads: "Photographer: Snow. Date: 08-18. Reporter: Frederick. Assignment: Nat'l. Assn. of Employment Agencies. L-R: Mrs. Vera Sugg, of London, England, and Miss Helen McCarthy of L.A."
DOI: 10.25549/examiner-m24312
title: Child support, 1960

description: 1 image. Child support, 18 August 1960. Mr. and Mrs. Earl Konajeri; Children: Shery -- 4 months; Sally -- 2 years; Scott -- 2 years; Sandra -- 18 months; Suzanne -- 8 years. ; Caption slip reads: "Photographer: Mitchell. Date: 1960-08-18. Reporter: Pony Garner. Assignment: Child Support. 75-76: L to R: Shery, 4 mos. (?) Earl Konajeri holding Sally, 2 mos.; Scot, 2 yrs.; Shirley Konajeri holding Sandra, 18 (?) mos.; Suzanne, 8 yrs.?
DOI: 10.25549/examiner-m24324
title: World trade, 1960

description: 1 image. World trade, 18 August 1960. Lily Dajahi (Miss Israel); John H. Johnson; Iona Pinto (Miss India); Elizabeth Hodacs (Miss Australia). Girls reaching for social security cards). ; Caption slip reads: "Photographer: Lapp. Date: 1960-08-18. Reporter: Slater. Assignment: World trade. L to R: Miss Israel -- Lily Dajahi; John H. Johnson, Soc. Sec. Mgr., Santa Monica Office; Miss India -- Iona Pinto; Miss Australia -- Elizabeth Hodacs. Girls reaching for Soc. Sec. cards."
DOI: 10.25549/examiner-m24411
title: Divorce, 1960

description: 1 image. Divorce, 24 August 1960. Freda Avery. ; Caption slip reads: "Photographer: Mitchell. Date: 1960-08-24. Reporter: Pony Garner. Assignment: Divorce. 75-76: Freda Avery."