cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10257842
title: Staple food crops from Brazilian Biofortification Program have high protein quality and hypoglycemic action in Wistar rats

description: Abstract Biofortified staple food crops have become an effective tool by which to address micronutrient deficiencies in many at-risk populations. The effect of these food crops on the micronutrient status has been evaluated, however there is no studies investigating their protein quality, neither by themselves or in a food combination. Thus, this study investigated the effect of combinations of beans and rice, target for biofortification, with high carotenoids content crops (sweet potato and pumpkin) on protein quality, intestinal function and glycemia. Eight groups were evaluated (n=6): 1) rice + Caupi bean (RCB); 2) rice + Pontal bean (RPB); 3) rice + Caupi bean + pumpkin (RCBP); 4) rice + Pontal bean + pumpkin (RPBP); 5) rice + Caupi bean + sweet potato (RCBS); 6) rice + Pontal bean + sweet potato (RPBS); 7) casein (positive control); and 8) nitrogen free (negative control). Tested groups showed high protein quality, and groups containing Caupi bean showed higher true digestibility. Groups containing Pontal bean had a greater reduction of blood glucose compared to casein. Tested groups showed higher fecal excretion of lipids. Combination of food target for biofortification showed high protein quality, and the combinations containing Pontal beans showed hypoglycemic effect.
DOI: 10.6084/m9.figshare.10257830
title: Quality of ‘Tainung 1’ papaya produced by partial root zone drying

description: Resumo A significant portion of papaya production in the state of Minas Gerais originates from irrigated crops, and irrigation management using the partial root zone drying technique (PRD) is a fundamental alternative to reduce water waste. This study aimed to evaluate the quality of ‘Tainung 1’ papaya produced under PRD in semi-arid conditions of northern state of Minas Gerais. PRD treatments were composed of reduction of the calculated irrigation water (CIW) by 50%, applied on one side of the irrigation line, with alternation of 7, 14 and 21 days or without alternation and full irrigation, applying 100 % CIW in both lateral plant rows. Each experimental plot consisted of ten plants, and from six plants, fruits were harvested for evaluations at harvest point and when ripe. At harvest point, fruits had peel color, titratable acidity, ratio, pulp size and thickness similar to those produced without water deficit. Firmness, soluble solids content, fresh mass and central cavity diameter are distinct as a function of PRD condition. When ripe, only firmness varied according to PRD treatments. The quality of ‘Tainung 1’ papaya produced by partial root zone drying in semi-arid conditions was not compromised.
DOI: 10.6084/m9.figshare.10257833.v1
title: DEMOGRAPHIC ANALYSIS OF ACETABULAR FRACTURES TREATED IN A QUATERNARY CARE HOSPITAL FROM 2005 TO 2016

description: ABSTRACT Objective: Analyze the clinical and sociodemographic data on acetabular fractures in a Brazilian quaternary care hospital and compare with data reported in the literature. Methods: A descriptive, analytical cross-sectional epidemiological study analyzing 87 patients with acetabular fractures at Hospital São Paulo (UNIFESP/EPM) between 2005 and 2016. Demographic variables such as age, sex, occupation, educational level and color were investigated. Acetabular fractures were classified according to the AO/OTA group and Judet and Letournel classification. Therapeutic approach, hospital length of stay and waiting time for surgery as well as complications were analyzed. Associations were established among the various variables obtained. Results: The mean age of patients with acetabulum fractures was 39.8 years (SD 13.1 years). There was a predominance of posterior wall (34.5%) and dual-column (14.9%) fractures. The average hospital length of stay was 14.4 days. More than 90% of patients underwent a surgical procedure. One-fourth of patients had complications, the main one being infection (12.6%). Conclusions: Unimodal age distribution was obtained with a predominance of white male economically active patients. There was a predominance of posterior wall fractures. More than 90% of patients underwent surgery before they had been in hospital for 14 days. A statistically significant association was found between complications and exceeded length of hospital stay. Level of evidence II, Retrospective study.
DOI: 10.6084/m9.figshare.10257842.v1
title: Staple food crops from Brazilian Biofortification Program have high protein quality and hypoglycemic action in Wistar rats

description: Abstract Biofortified staple food crops have become an effective tool by which to address micronutrient deficiencies in many at-risk populations. The effect of these food crops on the micronutrient status has been evaluated, however there is no studies investigating their protein quality, neither by themselves or in a food combination. Thus, this study investigated the effect of combinations of beans and rice, target for biofortification, with high carotenoids content crops (sweet potato and pumpkin) on protein quality, intestinal function and glycemia. Eight groups were evaluated (n=6): 1) rice + Caupi bean (RCB); 2) rice + Pontal bean (RPB); 3) rice + Caupi bean + pumpkin (RCBP); 4) rice + Pontal bean + pumpkin (RPBP); 5) rice + Caupi bean + sweet potato (RCBS); 6) rice + Pontal bean + sweet potato (RPBS); 7) casein (positive control); and 8) nitrogen free (negative control). Tested groups showed high protein quality, and groups containing Caupi bean showed higher true digestibility. Groups containing Pontal bean had a greater reduction of blood glucose compared to casein. Tested groups showed higher fecal excretion of lipids. Combination of food target for biofortification showed high protein quality, and the combinations containing Pontal beans showed hypoglycemic effect.
DOI: 10.6084/m9.figshare.10257731
title: Statistics and validation of data, and processing result data for publication "Numerical simulation of the irrigation effects on surface fluxes and local climate in typical mountain-oasis-desert systems in the Central Asia arid area"

description: Statistics and validation of data, and processing result data for publication "Numerical simulation of the irrigation effects on surface fluxes and local climate in typical mountain-oasis-desert systems in the Central Asia arid area"
DOI: 10.6084/m9.figshare.10257830.v1
title: Quality of ‘Tainung 1’ papaya produced by partial root zone drying

description: Resumo A significant portion of papaya production in the state of Minas Gerais originates from irrigated crops, and irrigation management using the partial root zone drying technique (PRD) is a fundamental alternative to reduce water waste. This study aimed to evaluate the quality of ‘Tainung 1’ papaya produced under PRD in semi-arid conditions of northern state of Minas Gerais. PRD treatments were composed of reduction of the calculated irrigation water (CIW) by 50%, applied on one side of the irrigation line, with alternation of 7, 14 and 21 days or without alternation and full irrigation, applying 100 % CIW in both lateral plant rows. Each experimental plot consisted of ten plants, and from six plants, fruits were harvested for evaluations at harvest point and when ripe. At harvest point, fruits had peel color, titratable acidity, ratio, pulp size and thickness similar to those produced without water deficit. Firmness, soluble solids content, fresh mass and central cavity diameter are distinct as a function of PRD condition. When ripe, only firmness varied according to PRD treatments. The quality of ‘Tainung 1’ papaya produced by partial root zone drying in semi-arid conditions was not compromised.
DOI: 10.6084/m9.figshare.10257695
title: Freshwater common reeds in the Yellow River Delta responding to salt stress_Salt stress

description: Freshwater common reed (F) in Yellow River Delta responding to salt stress. F300 (300 mmol/L NaCl treatment)：F5, F9, F33.
DOI: 10.6084/m9.figshare.10257692
title: The Life Aquatic With Spiders

description: Trees, matrices, PartitionFinder output
DOI: 10.6084/m9.figshare.10257695.v1
title: Freshwater common reeds in the Yellow River Delta responding to salt stress_Salt stress

description: Freshwater common reed (F) in Yellow River Delta responding to salt stress. F300 (300 mmol/L NaCl treatment)：F5, F9, F33.
DOI: 10.6084/m9.figshare.10257671
title: Raw Data Dictionary

description: This is a file that explains all terms, initials, and numbers presented in the raw data on https://doi.org/10.6084/m9.figshare.10072898<br>The published article can be found on http://dx.doi.org/10.12688/f1000research.21007.1<br>
DOI: 10.6084/m9.figshare.10257692.v1
title: The Life Aquatic With Spiders

description: Trees, matrices, PartitionFinder output
DOI: 10.6084/m9.figshare.10257659
title: BioCompute Object - RNA-Seq Differential Expression & Pathway Analysis - Generated by BCO App

description: An example BioCompute Object (BCO) generated by the BCO App (https://github.com/sbg/bco-app). The BCO is generated from the Common Workflow Language (CWL) workflow “RNA-Seq Quantification (HISAT2, StringTie)” and the corresponding execution results. The workflow is publicly available from the Cancer Genomics Cloud public apps gallery (https://cgc.sbgenomics.com/public/apps).
DOI: 10.6084/m9.figshare.10257671.v1
title: Raw Data Dictionary

description: This is a file that explains all terms, initials, and numbers presented in the raw data on https://doi.org/10.6084/m9.figshare.10072898<br>The published article can be found on http://dx.doi.org/10.12688/f1000research.21007.1<br>
DOI: 10.6084/m9.figshare.10257659.v1
title: BioCompute Object - RNA-Seq Differential Expression & Pathway Analysis - Generated by Genomics Compliance Suite

description: An example BioCompute Object (BCO) generated by the Genomics Compliance Suite (https://github.com/sbg/gcs). The BCO is generated from the Common Workflow Language (CWL) workflow “RNA-Seq Quantification (HISAT2, StringTie)” and task execution results. The workflow is publicly available from the Cancer Genomics Cloud public apps gallery (https://cgc.sbgenomics.com/public/apps).
DOI: 10.6084/m9.figshare.10257659.v2
title: BioCompute Object - RNA-Seq Differential Expression & Pathway Analysis - Generated by BCO App

description: An example BioCompute Object (BCO) generated by the BCO App (https://github.com/sbg/bco-app). The BCO is generated from the Common Workflow Language (CWL) workflow “RNA-Seq Quantification (HISAT2, StringTie)” and the corresponding execution results. The workflow is publicly available from the Cancer Genomics Cloud public apps gallery (https://cgc.sbgenomics.com/public/apps).
DOI: 10.6084/m9.figshare.10257659.v4
title: BioCompute Object - RNA-Seq Differential Expression & Pathway Analysis - Generated by BCO App

description: An example BioCompute Object (BCO) generated by the BCO App (https://github.com/sbg/bco-app). The BCO is generated from the Common Workflow Language (CWL) workflow “RNA-Seq Quantification (HISAT2, StringTie)” and the corresponding execution results. The workflow is publicly available from the Cancer Genomics Cloud public apps gallery (https://cgc.sbgenomics.com/public/apps).
DOI: 10.5522/04/10257485
title: Viscosity, Density and Deformation Mechanisms data for Slab Orphaning

description: Data outputs from the finite volume/difference code StagYY (Tackley, 2008) for viscosity, density and deformation mechanisms for the paper: <br>Slab Orphaning as a Mechanism for Slab Break-Off in the Mid-Mantle<br><br>By Grima, A.G., Crameri, F. and Lithgow-Bertelloni, C. (2019). <br>PNAS<br>Files can be post processed and analysed with post processing codes such as StagLab, freely available from http://doi.org/10.5281/zenodo.1199037. <br><br><br>
DOI: 10.6084/m9.figshare.10257659.v3
title: BioCompute Object - RNA-Seq Differential Expression & Pathway Analysis - Generated by BCO App

description: An example BioCompute Object (BCO) generated by the BCO App (https://github.com/sbg/bco-app). The BCO is generated from the Common Workflow Language (CWL) workflow “RNA-Seq Quantification (HISAT2, StringTie)” and the corresponding execution results. The workflow is publicly available from the Cancer Genomics Cloud public apps gallery (https://cgc.sbgenomics.com/public/apps).
DOI: 10.5522/04/10257485.v1
title: Viscosity, Density and Deformation Mechanisms data for Slab Orphaning

description: Data outputs from the finite volume/difference code StagYY (Tackley, 2008) for viscosity, density and deformation mechanisms for the paper: <br>Slab Orphaning as a Mechanism for Slab Break-Off in the Mid-Mantle<br><br>By Grima, A.G., Crameri, F. and Lithgow-Bertelloni, C. (2019). <br>PNAS<br>Files can be post processed and analysed with post processing codes such as StagLab, freely available from http://doi.org/10.5281/zenodo.1199037. <br><br><br>
DOI: 10.6084/m9.figshare.10257458
title: Digital holograms of isolated HL60 cell nuclei

description: <b>Digital holograms of isolated HL60 cell nuclei<br></b><br>These data were originally used by Schürmann et al. [1] for the<br>quantification of the refractive index of isolated HL60 cell nuclei.<br><br><br>Raw data<br>The data are related to [1] according to the following scheme<br>(last part before suffix indicates cell cycle stage):<br><br>Figure 5 - 1st measurement:<br>2014-05-29_DHM_HL60-nuclei-G1.zip<br>2014-05-29_DHM_HL60-nuclei-G2.zip<br>2014-05-29_DHM_HL60-nuclei-S.zip<br><br>Figure 5 - 2nd measurement:<br>2014-07-03_DHM_HL60-nuclei-G1.zip<br>2014-07-03_DHM_HL60-nuclei-G2.zip<br>2014-07-03_DHM_HL60-nuclei-S.zip<br><br><br>Data analysis<br>Data analysis in [1] has been performed largely manual. In [2],<br>the analysis has been revisited with DryMass [3] which enables an<br>automated data analysis. The .cfg files are DryMass configuration<br>files [4], i.e. analysis recipes that allow a complete data analysis<br>from scratch. The file "HL60nuc.cfg" contains the basic data analysis<br>recipe. The file "ignore_ROIs.txt" contains the ignored regions of<br>interest for each measurement. The other .cfg files contain the same<br>information with default values filled in by DryMass. The analysis<br>has been tested with DryMass version 0.10.0.<br><br>To run an analysis, issue e.g. the following command:<br><br> dm_analyze_sphere -p 2014-05-29_DHM_HL60-nuclei-G1.cfg 2014-05-29_DHM_HL60-nuclei-G1.zip<br><br><br>References<br>[1] M. Schürmann et al., "Cell nuclei have lower refractive index and mass density than cytoplasm," Journal of Biophotonics 9(10): 1068–1076, 2016. doi:10.1002/jbio.201500273.<br>[2] P. Müller et al., "DryMass: handling and analyzing quantitative phase microscopy images of cell-sized objects," manuscript in preparation.<br>[3] https://drymass.readthedocs.io/<br>[4] https://drymass.readthedocs.io/en/stable/sec_gs_configuration_file.html<br><br>
DOI: 10.6084/m9.figshare.10257392
title: The interplay of recent vegetation and sea ice dynamics – results from a regional Earth system model over the Arctic

description: These files support the analysis for the manuscript "The interplay of recent vegetation and sea ice dynamics – results from a regional Earth system model over the Arctic", which was submitted to the journal Geophysical Research Letters. The regional Earth system model outputs are included in the files "feedback_MONMEAN.tar.gz" and "non-feedback_MONMEAN.tar.gz". The vegetation indexes are included in "veg.nc". To extract the climate variables, the users should refer to the variable namelist file "rca.txt".Sea ice data sets are included in the file "sea ice.zip".<br>Any questions regarding to these data sets should be forwarded to the correponding author of the manuscript via wenxin.zhang@nateko.lu.se
DOI: 10.6084/m9.figshare.10257389
title: PRJNA327743.zip

description: Test assembly dataset for centreseq derived from BioProject PRJNA327743.<br>
DOI: 10.6084/m9.figshare.10257392.v1
title: The interplay of recent vegetation and sea ice dynamics – results from a regional Earth system model over the Arctic

description: These files support the analysis for the manuscript "The interplay of recent vegetation and sea ice dynamics – results from a regional Earth system model over the Arctic", which was submitted to the journal Geophysical Research Letters. The regional Earth system model outputs are included in the files "feedback_MONMEAN.tar.gz" and "non-feedback_MONMEAN.tar.gz". The vegetation indexes are included in "veg.nc". To extract the climate variables, the users should refer to the variable namelist file "rca.txt".Sea ice data sets are included in the file "sea ice.zip".<br>Any questions regarding to these data sets should be forwarded to the correponding author of the manuscript via wenxin.zhang@nateko.lu.se
DOI: 10.6084/m9.figshare.10257389.v1
title: PRJNA327743.zip

description: Test assembly dataset for centreseq derived from BioProject PRJNA327743.<br>
DOI: 10.6084/m9.figshare.10257284
title: Codes and Data for Manuscript IJGIS-2019-0308

description: This repository contains the codes and simulated dataset for paper entitled "Computational improvements to multiscale geographically weighted regression"
DOI: 10.6084/m9.figshare.10257068
title: final_bins_nucl.tar.gz

description: Assembled NCLDV genomic nucleic acid sequences for Moniruzzaman et al., 2019. <br>
DOI: 10.6084/m9.figshare.10257284.v1
title: Codes and Data for Manuscript IJGIS-2019-0308

description: This repository contains the codes and simulated dataset for paper entitled "Computational improvements to multiscale geographically weighted regression"
DOI: 10.6084/m9.figshare.10255811
title: Blocklist Features - Cell Profiler

description: CellProfiler features that are known to be noisy and generally unreliable. We recommend removing these features before downstream analyses.
DOI: 10.6084/m9.figshare.10255739
title: Receptor_Alim_2019_Pose_E_D_1.mdb (1).zip

description: In this contribution, we combine two molecular modeling strategies: molecular docking and three-dimensional quantitative structure-activity relationship (3D-QSAR). First, the molecular docking methodology was applied to a series of 34 analogues of AHL on the TraR transcriptional receptor to simulate the binding of analogues at the active TraR site. Secondly, 3D-QSAR models were generated to describe the correlation with the experimental biological activity using partial least squares (PLS) calculations and steric and electrostatic properties, which theoretically predict the activity of the 34 AHL analogues through statistical parameters and evaluate the prediction of the models obtained. Two alignment models were constructed; one using the optimized structures of the 34 analogues (ligand-based model) and another using the conformations of the best poses generated in the docking with TraR (receptor-based model).
DOI: 10.6084/m9.figshare.10255739.v1
title: Receptor_Alim_2019_Pose_E_D_1.mdb (1).zip

description: In this contribution, we combine two molecular modeling strategies: molecular docking and three-dimensional quantitative structure-activity relationship (3D-QSAR). First, the molecular docking methodology was applied to a series of 34 analogues of AHL on the TraR transcriptional receptor to simulate the binding of analogues at the active TraR site. Secondly, 3D-QSAR models were generated to describe the correlation with the experimental biological activity using partial least squares (PLS) calculations and steric and electrostatic properties, which theoretically predict the activity of the 34 AHL analogues through statistical parameters and evaluate the prediction of the models obtained. Two alignment models were constructed; one using the optimized structures of the 34 analogues (ligand-based model) and another using the conformations of the best poses generated in the docking with TraR (receptor-based model).
DOI: 10.6084/m9.figshare.10255811.v1
title: Blacklist Features - Cell Profiler

description: CellProfiler features that are known to be noisy and generally unreliable. We recommend removing these features before downstream analyses.
DOI: 10.6084/m9.figshare.10255811.v2
title: Blocklist Features - Cell Profiler

description: CellProfiler features that are known to be noisy and generally unreliable. We recommend removing these features before downstream analyses.
DOI: 10.6084/m9.figshare.10255619
title: CoryneRegNet 7 data

description: This compressed file contains transcriptional regulatory networks (TRNs) in simple interaction file (SIF) and comma-separated values (CSV) formats as well as operon information in CSV format for the 228 strains presented in CoryneRegNet 7.
DOI: 10.6084/m9.figshare.10255619.v1
title: CoryneRegNet 7 data

description: This compressed file contains transcriptional regulatory networks (TRNs) in simple interaction file (SIF) and comma-separated values (CSV) formats as well as operon information in CSV format for the 228 strains presented in CoryneRegNet 7.
DOI: 10.6084/m9.figshare.10255571
title: The Bouba–Kiki Effect in Persons with Prelingual Auditory Deprivation

description: The “bouba–kiki effect” refers to the correspondence between arbitrary visual and auditory stimuli. Previous studies have demonstrated that neurodevelopmental conditions and sensory impairment affect subjects’ performance on the bouba–kiki task. This study examined the bouba–kiki effect in participants with severe-to-profound hearing loss. Sixteen participants with severe- to- profound hearing loss who were habilitated aurally and used oral language for everyday communication and 16 matched hearing peers were presented with the bouba–kiki task auditorily and orthographically. Verbal intelligence (Wechsler Adult Intelligence Scale – Third Edition) was determined for all participants and was similar in both groups. Our results demonstrate a reduced bouba–kiki effect in participants with severe-to-profound hearing loss compared to their hearing peers, though they performed above chance level. Moreover, the age at the first use of a hearing device was associated with participants’ performance on the bouba–kiki task in adulthood. Better performance was shown in participants who used a hearing device at infancy before 23 months of age. These results support a relationship between early auditory or linguistic deprivation, and performance on the bouba–kiki task, and are discussed in the light of the role of a sensitive period on the development of the effect. This study is the first to show that prelingual deafness affects cross-modal auditory–visual correspondence resulting in reduced sound symbolism.
DOI: 10.6084/m9.figshare.10255577.v1
title: NBS n the Water Sector and Urban Resilience

description: · In urban water management, Nature-based Solutions concept have emerged as sustainable solutions, addressing climate change challenges. · A reflection on urban resilience assessment, with focus on urban water management, and Ecosystem Services is made. · The attributes for a comprehensive assessment framework of urban resilience and the main contributes of Nature-based Solutions for resilience are identified.
DOI: 10.6084/m9.figshare.10255526
title: Metadata record for: Full-length transcriptome sequencing from multiple tissues of duck, Anas platyrhynchos

description: This dataset contains key characteristics about the data described in the Data Descriptor Full-length transcriptome sequencing from multiple tissues of duck, Anas platyrhynchos. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format<br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>