cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.923591
title: Synthesis data on plant community composition, plant traits and ecosystem properties from the Jena Main experiment

description: Data on plant communities (biomass and relative cover of all target species), plant traits (41 different traits, measured on 59 species), and 42 ecosystem properties/functions, measured between 2003 and 2012 in the Jena Main Biodiversity experiment. In floodplain grasslands of the Saale river, near Jena (Germany) 78 20x20 m grassland plots were set up, in which combinations of 1, 2, 4, 8 or 16 species were sown, from a species pool of 60. Thereby, the aim was to create a gradient in plant species richness and functional composition. In each year from 2003-2012, relative cover (in %) of each target species was estimated within 3x3 m subplots. In addition, plant biomass was measured in both spring and summer.In addition, we compiled trait data for 59 of the 60 sown species, based on a combination of existing literature, pot experiments and measurements in the Jena Main Biodiversity experiment monoculture (1-species) plots. Data on 41 traits was collected. Finally, we measured in 41 different ecosystem functions in the Jena Main Biodiversity experiment. Each ecosystem function was measured in at least 3 different years between 2003 and 2012.The "R2.model.random.text[x]" (where x is a number from 1 to 40) are secondary data files, and the outcome of statistical models. In these, 100 times a random subset of 1 to 40 (out of the 41) plant traits were analysed as predictors of the 42 ecosystem functions, in order to assess how the proportion of variance in ecosystem functioning explained by traits (R2 values) depends on the number of traits analysed.
description: This dataset has been carefully reviewed and curated in accordance with PANGAEA's exceptionally high quality standards. However, due to discontinued communication from the authors' side, it did not receive the usual formal approval by the authors and therefore lacks final scientific validation.
DOI: 10.1594/pangaea.974143
title: Multibeam bathymetry processed data (Atlas Hydrosweep DS 2 echo sounder entire dataset) of RV POLARSTERN during cruise ARK-XXII/1c (PS70), Hausgarten, Arctic Ocean

description: Multibeam data were collected during RV Polarstern cruise ARK-XXII/1c (2007-07-09 to 2007-07-25). Multibeam sonar system was Atlas Hydrographic Hydrosweep DS 2 multibeam echo sounder. Data are processed with Caris HIPS, including sound velocity correction with SV data from CTDs and World Ocean Atlas 18 (https://www.ncei.noaa.gov/archive/accession/NCEI-WOA18), tidal correction with TPXO9_atlas_v5 (https://www.tpxo.net), and manual cleaning. The soundings are combined in daily files, the format is XYZ ASCII ( ). Additional grids have been computed with depth dependent cell size to visualize the data. These grids are not meant for scientific analysis or navigation, but for overview purposes only.
description: These data should not be used for navigational purposes.
DOI: 10.5061/dryad.rs5g0
title: Data from: Multiple cross-species transmission events of human adenoviruses (HAdV) during hominine evolution

description: Human adenoviruses (HAdV; species HAdV-A to -G) are highly prevalent in
 the human population, and represent an important cause of morbidity and,
 to a lesser extent, mortality. Recent studies have identified close
 relatives of these viruses in African great apes, suggesting that some
 HAdV may be of zoonotic origin. We analyzed more than 800 fecal samples
 from wild African great apes and humans to further investigate the
 evolutionary history and zoonotic potential of hominine HAdV. HAdV-B and
 -E were frequently detected in wild gorillas (55%) and chimpanzees (25%),
 respectively. Bayesian ancestral host reconstruction under discrete
 diffusion models supported a gorilla and chimpanzee origin for these viral
 species. Host switches were relatively rare along HAdV evolution, with
 about ten events recorded in 4.5 My. Despite presumably rare direct
 contact between sympatric populations of the two species, transmission
 events from gorillas to chimpanzees were observed, suggesting that habitat
 and dietary overlap may lead to fecal-oral cross-hominine transmission of
 HAdV. Finally, we determined that two independent HAdV-B transmission
 events to humans occurred more than 100,000 years ago. We conclude that
 HAdV-B circulating in humans are of zoonotic origin and have probably
 affected global human health for most of our species lifetime.
description: Short adenovirus (hexon
 sequences) derived from great ape and human fecal
 samplesThis FASTA file
 comprises 582 sequencesShort_hexon_sequences.fasta
DOI: 10.1594/pangaea.945778
title: Terrestrial cosmogenic nuclides 10Be and 26Al from the lower section of the Colorado River

description: We collected six samples of exposed streambed sand (250-850 μm) from the lower section of the Colorado River, along a ~450km distance starting south of Hoover Dam and ending near Yuma (see exact locations in data table). All samples collected were prepared at the Cosmogenic Laboratory, Institute of Earth Sciences, Hebrew University of Jerusalem, following standard procedures (Bierman & Caffee, 2001 (doi:10.2475/ajs.301.4-5.326); Kohl & Nishiizumi, 1992 (doi:10.1016/0016-7037(92)90401-4)). Be and Al isotopic ratios were measured at the accelerator mass spectrometry (AMS) facility (ASTER) at CEREGE, Aix-en-Provence, France, and normalized to accepted AMS standards.
description: This dataset has been carefully reviewed and curated in accordance with PANGAEA's exceptionally high quality standards. However, due to discontinued communication from the authors' side, it did not receive the usual formal approval by the authors and therefore lacks final scientific validation.
DOI: 10.1594/pangaea.974141
title: Multibeam bathymetry processed data (Atlas Hydrosweep DS 3 echo sounder entire dataset) of RV POLARSTERN during cruise ANT-XXVII/1 (PS77), Atlantic Ocean

description: Multibeam data were collected during RV Polarstern cruise ANT-XXVII/1 (2010-10-25 to 2010-11-26). Multibeam sonar system was Atlas Hydrographic Hydrosweep DS 3 multibeam echo sounder. Data are processed with Caris HIPS, including sound velocity correction with SV data from SVPs and World Ocean Atlas 18 (https://www.ncei.noaa.gov/archive/accession/NCEI-WOA18), tidal correction with TPXO9_atlas_v5 (https://www.tpxo.net), and manual cleaning. The soundings are combined in daily files, the format is XYZ ASCII ( ). Additional grids have been computed with depth dependent cell size to visualize the data. These grids are not meant for scientific analysis or navigation, but for overview purposes only.
description: These data should not be used for navigational purposes.
DOI: 10.1594/pangaea.960055
title: Physicochemical data of porewater collected after incubations

description: The subterranean estuary (STE) has been recognised as a reactive biogeochemical zone at the groundwater–seawater interface in coastal areas. In this study, we collected sediments from different seasons (April 2021 [storm season) and September 2021 [dry season]) from Mobile Bay, USA. Shallow sediment cores (up to 2 m) were recovered using a Geoprobe coring system (Model 5410, Geoprobe Systems, Inc.). We conducted controlled laboratory experiments using these sediments and subjected them to various nitrate inputs (Storm/Dry 2-4, GW1-2), saline solutions (Storm/Dry 5-6, SW1-2), and incubation times (Storm/Dry 7-8). We measured (1) inorganic nutrients (nitrate, nitrite, ammonium, phosphate), (2) dissolved organic carbon (DOC), and (3) dissolved organic nitrogen (DON) concentration. Dissolved organic matter (DOM) quality was analyzed with Fourier-transform ion cyclotron resonance mass spectrometry.
description: This dataset has been carefully reviewed and curated in accordance with PANGAEA's exceptionally high quality standards. However, due to discontinued communication from the authors' side, it did not receive the usual formal approval by the authors and therefore lacks final scientific validation.
DOI: 10.1594/pangaea.974142
title: Multibeam bathymetry processed data (Atlas Hydrosweep DS 2 echo sounder entire dataset) of RV POLARSTERN during cruise ARK-XXII/1a (PS70), Norwegian Sea, North Atlantic Ocean

description: Multibeam data were collected during RV Polarstern cruise ARK-XXII/1a (2007-05-25 to 2007-06-21). Multibeam sonar system was Atlas Hydrographic Hydrosweep DS 2 multibeam echo sounder. Data are processed with Caris HIPS, including sound velocity correction with SV data from CTDs and World Ocean Atlas 18 (https://www.ncei.noaa.gov/archive/accession/NCEI-WOA18), tidal correction with TPXO9_atlas_v5 (https://www.tpxo.net), and manual cleaning. The soundings are combined in daily files, the format is XYZ ASCII ( ). Additional grids have been computed with depth dependent cell size to visualize the data. These grids are not meant for scientific analysis or navigation, but for overview purposes only.
description: These data should not be used for navigational purposes.
DOI: 10.1594/pangaea.936028
title: Comparing fine-scale structural and hydrologic connectivity within unimproved and improved grassland

description: Grasslands vary with diverse forms and functions ranging from monocultures of perennial rye grass to more biodiverse unimproved grasslands which cover around 5% of Europe. Despite the broad diversity of grassland types, within environmental and flood risk models grasslands are frequently represented by a singular set of hydrological and structural parameters which belies their diversity and complexity. This study aimed to determine empirically the extent to which improved vs unimproved grasslands exhibit different hydrological connectivity. Working in SW England at neighbouring field sites with comparable slopes and rainfall regimes, we used unpiloted aerial vehicles to survey a tussocky Molinia caerulea dominated unimproved grassland field (MCUG) field and a Lolium perenne dominated improved grassland (LPIG) field. Using digital photogrammetry workflows applied to the overlapping aerial images, we produced a digital surface model (DSM) at 0.03m resolution from which flow pathways were modelled using GIS and compared with 1m LiDAR and DSM produced by a global navigation satellite system (GNSS). MCUG had longer, tortuous pathways through the dense tussock network with a drainage density of 2.54m m¯². This was significantly greater than drainage density in the LPIG (1.82m m̄²). As a result of this study, we rescaled the Manning's n value for MCUG according to photogrammetrically-derived roughness values. We suggest it should lie between 0.075 and 0.09. Our data shows that MCUG can play an important role in reducing overland flow impacts when compared to LPIG through lower connectivity which can delay runoff to rivers.
description: This dataset has been carefully reviewed and curated in accordance with PANGAEA's exceptionally high quality standards. However, due to discontinued communication from the authors' side, it did not receive the usual formal approval by the authors and therefore lacks final scientific validation.
DOI: 10.1594/pangaea.960052
title: DOM molecular composition of porewater collected after incubations

description: The subterranean estuary (STE) has been recognised as a reactive biogeochemical zone at the groundwater–seawater interface in coastal areas. In this study, we collected sediments from different seasons (April 2021 [storm season) and September 2021 [dry season]) from Mobile Bay, USA. Shallow sediment cores (up to 2 m) were recovered using a Geoprobe coring system (Model 5410, Geoprobe Systems, Inc.). We conducted controlled laboratory experiments using these sediments and subjected them to various nitrate inputs (Storm/Dry 2-4, GW1-2), saline solutions (Storm/Dry 5-6, SW1-2), and incubation times (Storm/Dry 7-8). Dissolved organic matter (DOM) molecular composition was analyzed with Fourier-transform ion cyclotron resonance mass spectrometry.
description: This dataset has been carefully reviewed and curated in accordance with PANGAEA's exceptionally high quality standards. However, due to discontinued communication from the authors' side, it did not receive the usual formal approval by the authors and therefore lacks final scientific validation.
DOI: 10.5061/dryad.vn66m
title: Data from: Variability in primary productivity determines metapopulation dynamics

description: Temporal variability in primary productivity can change habitat quality
 for consumer species by affecting the energy levels available as food
 resources. However, it remains unclear how habitat quality fluctuations
 may determine the dynamics of spatially structured populations, where the
 effects of habitat size, quality, and isolation have been customarily
 assessed assuming static habitats. We present the first empirical
 evaluation on the effects of stochastic fluctuations in primary
 productivity —a major outcome of ecosystem functions— on the
 metapopulation dynamics of a primary consumer. A unique 13-year dataset
 from an herbivore rodent was used to test the hypothesis that inter-annual
 variations in primary productivity determine habitat occupancy patterns
 and colonization and extinction processes. Inter-annual variability in
 productivity and in the growing season phenology significantly influenced
 habitat colonization patterns and occupancy dynamics. These effects lead
 to changes in connectivity to other potentially occupied habitat patches,
 which then feedback into occupancy dynamics. According to the results, the
 dynamics of primary productivity accounted for &gt; 50% of the
 variation in occupancy probability, depending on patch size and landscape
 configuration. Evidence connecting primary productivity dynamics and
 spatial population processes has broad implications for metapopulation
 persistence in fluctuating and changing environments.
description: Database primary
 productivity and metapopulation dynamicsNestorFernandez_DataArvicola.csv
DOI: 10.1594/pangaea.902516
title: Isotopes analysis of Neogloboquadrina dutertrei from ODP Site 202-1238

description: This dataset has been carefully reviewed and curated in accordance with PANGAEA's exceptionally high quality standards. However, due to discontinued communication from the authors' side, it did not receive the usual formal approval by the authors and therefore lacks final scientific validation.
DOI: 10.1594/pangaea.931474
title: Incubation chamber assays time series of chemical and biological variables from sample of the southeastern Mediterranean Sea

description: This dataset has been carefully reviewed and curated in accordance with PANGAEA's exceptionally high quality standards. However, due to discontinued communication from the authors' side, it did not receive the usual formal approval by the authors and therefore lacks final scientific validation.
DOI: 10.1594/pangaea.917939
title: Oceanographic profile of CTD cast K180528_TowYo_001_Cast_004
DOI: 10.1594/pangaea.931426
title: Down-core sediments and pore-water physicochemical characteristics from the southeastern Mediterranean Sea

description: This dataset has been carefully reviewed and curated in accordance with PANGAEA's exceptionally high quality standards. However, due to discontinued communication from the authors' side, it did not receive the usual formal approval by the authors and therefore lacks final scientific validation.
DOI: 10.1594/pangaea.917949
title: Oceanographic profile of CTD cast K180528_TowYo_001_Cast_013
DOI: 10.1594/pangaea.974204
title: Multibeam bathymetry processed data (Atlas Hydrosweep DS 3 echo sounder entire dataset) of RV POLARSTERN during cruise PS99.1 (ARK-XXX/1.1), Norwegian Sea, North Atlantic Ocean

description: Multibeam data were collected during RV Polarstern cruise PS99.1 (2016-06-13 to 2016-06-22). Multibeam sonar system was Atlas Hydrographic Hydrosweep DS 3 multibeam echo sounder. Data are processed with Caris HIPS, including sound velocity correction with SV data from World Ocean Atlas 18 (https://www.ncei.noaa.gov/archive/accession/NCEI-WOA18), tidal correction with TPXO9_atlas_v5 (https://www.tpxo.net), and manual cleaning. The soundings are combined in daily files, the format is XYZ ASCII ( ). Additional grids have been computed with depth dependent cell size to visualize the data. These grids are not meant for scientific analysis or navigation, but for overview purposes only.
description: These data should not be used for navigational purposes.
DOI: 10.5061/dryad.h25hj
title: Data from: Within-range translocations and their consequences in European larch

description: In contrast to biological invasions, translocations of individuals within
 a species range are understudied, due to difficulties in systematically
 detecting them. This results in limited knowledge about the corresponding
 processes and uncertainties regarding the status of extant populations.
 European larch, a forest tree whose fragmented native distribution is
 restricted to the Alps and to other Central European mountains, has been
 massively planted for at least 300 years. Here we focus on the genetic
 characterization of translocations having taken place within its native
 range. Microsatellite variation at 13 nuclear loci and sequence data of
 two mitochondrial DNA fragments were analyzed on the basis of a
 comprehensive range-wide population sample. Two complementary methods
 (Geneclass and Structure) were used to infer translocation events based on
 nuclear data whereas mitochondrial data were used for validation of these
 inferences. Using Geneclass, we found translocation events in a majority
 of populations. Additional cases of translocation and many instances of
 admixture were identified using Structure, thanks to the clear-cut
 ancestral genetic structure detected in this species. In particular, a
 strong divide between Alpine and Central European populations, also
 apparent at mitochondrial markers, helped uncover details on translocation
 events and related processes. Translocations and associated admixture
 events were found to be heterogeneously distributed across the species
 range, with a particularly high frequency in Central Europe. Furthermore,
 translocations frequently involved multiple geographic sources, some of
 which were over-represented. Our study illustrates the importance of
 range-wide investigations for tracing translocations back to their origins
 and for revealing some of their consequences. It provides some first clues
 for developing suitable conservation and management strategies.
description: 130224_Larix_sample_info130224_Larix_sample_info_mt_ha
DOI: 10.1594/pangaea.907173
title: Swath Bathymetry compilation offshore Brunt Ice Shelf

description: Compilation of swath bathymetric data acquired by the Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany, and the British Antarctic Survey, Cambridge, UK, until 2019. The data were gridded in Antarctic Polar Stereographic Projection with true scale at 71°S (EPSG:3031). The resolution of the compiled grid is 25 m. The grid format is TIFF.
description: Supplement to: Arndt, Jan Erik; Larter, Robert D; Hillenbrand, Claus-Dieter; Sørli, Simon; Forwick, Matthias; Smith, James A; Wacker, Lukas (2020): Past ice sheet–seabed interactions in the northeastern Weddell Sea embayment, Antarctica. The Cryosphere, 14(6), 2115-2135
DOI: 10.1594/pangaea.946970
title: Neodymium isotope record of IODP Site 303-U1304 for MIS 12-11

description: This data set reports neodymium (Nd) isotopic signatures at IODP Site 303-U1304 at the southern Gardar Drift in the North Atlantic to investigate changes in the deep water mass provenance from 374.3 to 468.5 ka covering Marine Isotope Stages (MIS) 12 and 11. The samples were taken along the shipboard splice and the age model of Xuan et al. (2016, doi:10.1016/j.quascirev.2016.04.010) was applied. The authigenic Nd isotopes were extracted from the sediment by bulk sediment leaching following the protocol of Blaser et al. (2016, doi:10.1016/j.chemgeo.2016.06.024). The isotope ratios were measured on a MC-ICP-MS (Neptune plus) coupled to a desolvator (Apex HF) at the Institute of Environmental Physics, Heidelberg University, Germany and were corrected to 146Nd/144Nd = 0.7219.
description: This dataset has been carefully reviewed and curated in accordance with PANGAEA's exceptionally high quality standards. However, due to discontinued communication from the authors' side, it did not receive the usual formal approval by the authors and therefore lacks final scientific validation.
DOI: 10.1594/pangaea.902529
title: Total organic carbon flux of ODP Site 202-1240

description: This dataset has been carefully reviewed and curated in accordance with PANGAEA's exceptionally high quality standards. However, due to discontinued communication from the authors' side, it did not receive the usual formal approval by the authors and therefore lacks final scientific validation.
DOI: 10.1594/pangaea.953049
title: 3D geological models and XML source file of the observation in the Aiguilles Rouges massif (Western Alps)

description: This dataset has been carefully reviewed and curated in accordance with PANGAEA's exceptionally high quality standards. However, due to discontinued communication from the authors' side, it did not receive the usual formal approval by the authors and therefore lacks final scientific validation.
DOI: 10.5061/dryad.16dt35k
title: Data from: Wolbachia infection associated with increased recombination in Drosophila

description: Wolbachia is a maternally-transmitted endosymbiotic bacteria that infects
 a large diversity of arthropod and nematode hosts. Some strains of
 Wolbachia are parasitic, manipulating host reproduction to benefit
 themselves, while other strains of Wolbachia exhibit obligate or
 facultative mutualisms with their host. The effects of Wolbachia on its
 host are many, though primarily relate to host immune and reproductive
 function. Here we test the hypothesis that Wolbachia infection alters the
 frequency of homologous recombination during meiosis. We use D.
 melanogaster as a model system, and survey recombination in eight
 wild-derived Wolbachia-infected (strain wMel) and Wolbachia-uninfected
 strains, controlling for genotype. We measure recombination in two
 intervals of the genome. Our results indicate that Wolbachia infection is
 associated with increased recombination in one genomic interval and not
 the other. The effect of Wolbachia infection on recombination is thus
 heterogenous across the genome. Our data also indicate a reproductive
 benefit of Wolbachia infection; infected females show higher fecundity
 than their uninfected genotypic controls. Given the prevalence of
 Wolbachia infection in natural populations, our findings suggest that
 Wolbachia infection is likely to contribute to recombination rate and
 fecundity variation among individuals in nature.
description: RawDataAll of the raw count data associated with this manuscript
DOI: 10.1594/pangaea.974736
title: Multibeam bathymetry processed data (Atlas Hydrosweep DS 3 echo sounder entire dataset) of RV POLARSTERN during cruise PS93.1, Greenland Sea, Arctic Ocean

description: Multibeam data were collected during RV Polarstern cruise PS93.1 (2015-06-29 to 2015-07-17). Multibeam sonar system was Atlas Hydrographic Hydrosweep DS 3 multibeam echo sounder. Data are processed with Caris HIPS, including sound velocity correction with SV data from CTDs and World Ocean Atlas 18 (https://www.ncei.noaa.gov/archive/accession/NCEI-WOA18), tidal correction with TPXO9_atlas_v5 (https://www.tpxo.net), and manual cleaning. The soundings are combined in daily files, the format is XYZ ASCII ( ). Additional grids have been computed with depth dependent cell size to visualize the data. These grids are not meant for scientific analysis or navigation, but for overview purposes only.
description: These data should not be used for navigational purposes.