cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14936055.v2
title: Code from: To stay close or go far? When streaked shearwaters decide the duration of their trips at sea

description: Revealing the timing of decision-making by animals is crucial to understand the behavioral strategy of animals and their relationships with the surrounding environment. Although GPS tracking data of animals in the wild enable computational analysis of animal movement, it is difficult to identify the timing of decision-making from multi-dimensional time-series data consisting of dozens of parameters such as speed and orientation. In this study, we developed a machine learning method based on a group of classifiers to determine the timing when streaked shearwaters (<i>Calonectris leucomelas</i>) decide to conduct short (an average of 15 h) or long (&gt;1 day) foraging trips by analyzing GPS trajectories. In our method, each classifier is responsible for different time periods of data and is designed to predict the type of the foraging trip by processing the multi-dimensional time-series data extracted from trajectory segments within the period. We found that the types of trips were predicted with high accuracy (approximately 70%) only from the initial 5 h of trajectory data, indicating that the shearwaters decided the types of trips at a very early phase after starting their trips. Following the machine learning method, an in-depth analysis of the initial 5 h period of the trips suggested that the shearwaters conducted long-term trips when they could not catch fish during this time. Our framework opens new directions for the analysis of tracking data and provides evidence of in-situ decision-making by wild animals.
DOI: 10.6084/m9.figshare.11777595
title: C. nubiana protein-coding genes

description: This file contain C. nubiana predicted protein coding sequences and its functional annotations metadata.
DOI: 10.6084/m9.figshare.11777595.v1
title: C. nubiana protein-coding genes

description: This file contain C. nubiana predicted protein coding sequences and its functional annotations metadata.
DOI: 10.25416/ntr.14447256.v1
title: NTR - Curator and Critical Friend Affiliations

description: Please view this file to see a list of our current curators, critical friends, and organisation affiliations.<br><br><br><br>Last Updated April 2021
DOI: 10.25416/ntr.14447256
title: NTR - Curator and Critical Friend Affiliations

description: Please view this file to see a list of our current curators, critical friends, and organisation affiliations.<br><br><br><br>Last Updated April 2021
DOI: 10.6084/m9.figshare.11954382
title: SNV and INDELs

description: SNV and INDELS and associated annotations
DOI: 10.6084/m9.figshare.11954382.v1
title: SNV and INDELs

description: SNV and INDELS and associated annotations
DOI: 10.5281/zenodo.5101120
title: Knutson et al 2020 North Atlantic TC Projections Simulations of Multiplicative Changes in Cat03 and Cat45 Frequencies

description: Coming soon.
DOI: 10.5281/zenodo.5095404
title: Knutson et al 2020 North Atlantic TC Projections Simulations of Multiplicative Changes in Cat03 and Cat45 Frequencies

description: Coming soon.
DOI: 10.6084/m9.figshare.14979762
title: Table S1.xlsx

description: q312312
DOI: 10.6084/m9.figshare.14979762.v2
title: Table S1.xlsx

description: q312312
DOI: 10.6084/m9.figshare.14979762.v1
title: Table S1.xlsx

description: q312312
DOI: 10.5281/zenodo.5101135
title: UrbanNH3

description: R code for urban NH3 paper.
DOI: 10.5281/zenodo.5101134
title: UrbanNH3

description: R code for urban NH3 paper.
DOI: 10.6084/m9.figshare.14979771
title: Petrological and geochemical records of melt extraction and crystal accumulation in highly alkaline rocks from the Central Asian Orogenic Belt DATA

description: Petrological and geochemical records of melt extraction and crystal accumulation in highly alkaline rocks from the Central Asian Orogenic Belt DATA
DOI: 10.6084/m9.figshare.14979771.v1
title: Petrological and geochemical records of melt extraction and crystal accumulation in highly alkaline rocks from the Central Asian Orogenic Belt DATA

description: Petrological and geochemical records of melt extraction and crystal accumulation in highly alkaline rocks from the Central Asian Orogenic Belt DATA
DOI: 10.6084/m9.figshare.14979657
title: Supplementary Material for: Effects of Dingchuan Decoction on Lung Function and Clinical Effectiveness Rate in Children with Asthma: A Systematic Review and Meta-Analysis

description: Dingchuan decoction (DCD) is a traditional Chinese prescription for asthma that remains popular today. To systematically evaluate the effect of DCD on lung function, clinical effectiveness rate, and safety in children with asthma, significant databases were searched for randomized controlled trials from their inception to September 9, 2019. Randomized controlled trials assessing the effect of DCD on lung function and clinical effectiveness rate in children with asthma were included in this meta-analysis. The methodological quality of the included trials was assessed using the Cochrane risk of bias tool. RevMan 5.3 was used for data analysis. Fourteen studies with 1,384 children were reviewed. FEV<sub>1</sub> improvement rate (mean difference [MD] 12.50, 95% confidence interval [CI] 8.72–16.29), PEF improvement rate (MD 14.28, 95% CI 11.08–17.49), and clinical effectiveness rate (relative risk 1.19, 95% CI 1.14–1.25) significantly increased in the DCD group when compared to simple conventional medication. Four trials suggest that DCD is safe for children. In conclusion, the use of DCD combined with conventional medication improves lung function and clinical effectiveness rate better than simple conventional medication. However, the selected trials lack blinding and large-scale studies. Therefore, to better manage DCD in clinical practice, more randomized controlled trials and large-scale studies are required for further evaluation.
DOI: 10.6084/m9.figshare.14979678
title: Supplementary Material for: Interventions to Support Informal Caregivers of People with Chronic Obstructive Pulmonary Disease: A Systematic Literature Review

description: <b><i>Background:</i></b> Chronic obstructive pulmonary disease (COPD) imposes tremendous challenges for both patients and informal caregivers. Caregivers are key players in the management of COPD. Recently, COVID-19 further increased reliance on informal caregivers who urgently need specific support. This systematic literature review aimed to systematically describe the content and explore the effects of interventions to support informal caregivers of people with COPD. <b><i>Methods:</i></b> A mixed-methods systematic review was conducted. PubMed, Scopus, Web of Science, and EBSCO were searched. Studies implementing interventions supporting informal caregivers of people with COPD were included. Data were extracted and analysed in outcome domains and categories using framework analysis. <b><i>Results:</i></b> Twenty (14 quantitative, 4 mixed-methods, and 2 qualitative) studies were included. Informal caregivers were mainly female (86%). Caregiving context was poorly/never described. Interventions included patient-caregiver dyads and never caregivers only. Informal caregivers were invited to participate if available. Interventions were delivered across all COPD phases (acute/stable/advanced) and settings (inpatient/outpatient/home), with a wide range of total length, frequency, and duration of sessions. All included education about the disease and its management. Discharge/action plans (<i>n</i> = 12); adherence to therapy and healthy lifestyles (<i>n</i> = 9); and family concerns and psychosocial issues (<i>n</i> = 7) were also commonly addressed. Only 9 (45%) studies reported caregiver-related outcomes, and overall positive effects were observed in 7/9 outcome domains, using a high variety of qualitative and qualitative methods. Often categories were addressed but not assessed. <b><i>Conclusion:</i></b> Interventions have a narrow scope (i.e., education) and have not been specifically designed to support informal caregivers. Current evidence showed positive effects, but high methodological heterogeneity exists. Future studies need to explore caregiver-tailored, taking into consideration gender differences; multicomponent; and flexibly administered interventions to effectively support COPD caregivers.
DOI: 10.6084/m9.figshare.14979678.v1
title: Supplementary Material for: Interventions to Support Informal Caregivers of People with Chronic Obstructive Pulmonary Disease: A Systematic Literature Review

description: <b><i>Background:</i></b> Chronic obstructive pulmonary disease (COPD) imposes tremendous challenges for both patients and informal caregivers. Caregivers are key players in the management of COPD. Recently, COVID-19 further increased reliance on informal caregivers who urgently need specific support. This systematic literature review aimed to systematically describe the content and explore the effects of interventions to support informal caregivers of people with COPD. <b><i>Methods:</i></b> A mixed-methods systematic review was conducted. PubMed, Scopus, Web of Science, and EBSCO were searched. Studies implementing interventions supporting informal caregivers of people with COPD were included. Data were extracted and analysed in outcome domains and categories using framework analysis. <b><i>Results:</i></b> Twenty (14 quantitative, 4 mixed-methods, and 2 qualitative) studies were included. Informal caregivers were mainly female (86%). Caregiving context was poorly/never described. Interventions included patient-caregiver dyads and never caregivers only. Informal caregivers were invited to participate if available. Interventions were delivered across all COPD phases (acute/stable/advanced) and settings (inpatient/outpatient/home), with a wide range of total length, frequency, and duration of sessions. All included education about the disease and its management. Discharge/action plans (<i>n</i> = 12); adherence to therapy and healthy lifestyles (<i>n</i> = 9); and family concerns and psychosocial issues (<i>n</i> = 7) were also commonly addressed. Only 9 (45%) studies reported caregiver-related outcomes, and overall positive effects were observed in 7/9 outcome domains, using a high variety of qualitative and qualitative methods. Often categories were addressed but not assessed. <b><i>Conclusion:</i></b> Interventions have a narrow scope (i.e., education) and have not been specifically designed to support informal caregivers. Current evidence showed positive effects, but high methodological heterogeneity exists. Future studies need to explore caregiver-tailored, taking into consideration gender differences; multicomponent; and flexibly administered interventions to effectively support COPD caregivers.
DOI: 10.21942/uva.14931798
title: arXiv:2104.06814 Raw Data. analysis tools etc

description: Raw data, analysis tools and other usefull information from arXiv:2104.06814
DOI: 10.21942/uva.14931798.v2
title: arXiv:2104.06814 Raw Data. analysis tools etc

description: Raw data, analysis tools and other usefull information from arXiv:2104.06814
DOI: 10.21942/uva.14931798.v1
title: arXiv:2104.06814 Raw Data. analysis tools etc

description: Raw data, analysis tools and other usefull information from arXiv:2104.06814
DOI: 10.21227/5fr9-6x03
title: Clamp-on measurements of fluid flow in small diameter metal pipes using ultrasonic guided waves

description: Clamp-on ultrasonic transit time difference is used extensively to calculate the volumetric flow rate of a fluid through a pipe. The operating principle is that waves travelling along a path that is generally against the flow direction take longer to travel the same path than waves travelling along the same path in the opposite direction. The transit time difference between the waves travelling in opposite directions can be used to calculate the flow rate through the pipe, by applying suitable mathematical correction factors. The approach is non-disruptive and non-invasive and can be retrospectively fitted to pipes and easily relocated to different positions. When ultrasonic clamp-on transducers are attached to pipes with diameters of less than 30mm and a wall thickness of less than a few millimetres, the resulting guided waves can appear confusing, and produce very different signals to those observed on larger diameter pipes. The experimentally observed behaviour of these guided waves in fluid-filled, small diameter pipes is analysed, modelled and explained. Experiments are performed in copper pipes of sizes that are commonly used in buildings, and accurate measurements of water flow rates are taken down to a few millilitres per second . This technique presents new possibilities for smart metering of water supplies, where the positioning of the small clamp-on transducers is not sensitive to variations in water temperature, and low power electronics can be used.
DOI: 10.17632/537jgxk7hv.1
title: new_LVH_detection

description: detecting LVH and identifying the etiology of LVH
DOI: 10.17632/34ymt5z7yd.1
title: WTAU

description: The dataset in for WTA problem, includes three different set. Set A is for small-scale WTA problem, Set B is for large-scale WTA problem, and Set C is for the WTA problem with uncertainty.
DOI: 10.17632/76v4gwxyv8.1
title: VCE

description: Objective: To provide more evidence about the safety and effectiveness of external cephalic version (ECV) in a new hospital setting, and thus increasing its external validity of former studies, and estimate the costs avoided by implementing a protocol in order to attempt vaginal delivery of fetuses in breech presentation intended reduce the rate of caesarean section. Study Design: Prospective monitoring from December 2013 to December 2018. Setting: Department of Obstetrics and Gynaecology, Son Llàtzer University Hospital, Palma de Mallorca, Spain. Population: 561 female candidates who at 34–35 weeks’ gestation (WG) had fetuses in the breech presentation. Methods: Recruitment and training of personnel in ECV, information provided to midwives at the hospital and health centres in the area about the new care management algorithm, recruitment of the target population, appointment for consultation and application of the ECV protocol at 36-37 WG to confirm the persistence of breech presentation and perform ECV in the absence of contraindications. Results: Of 561 candidates, 403 women (71.8%) still had fetuses in the breech presentation. ECV was performed on 388, and the procedure was successful in 199 (55.9%). Of these, 153 (76.9%) had a vaginal delivery, in contrast with 4 (2.5%) for whom the ECV was not successful. The percentage of caesarean sections for breech presentation fell from 21.2% in 2013 to 12.2% in 2018 (a 42.5% mean reduction in incidence. The overall avoided expenditure from the start of ECV protocol application was €278,352.11. Discussion: The introduction of the ECV protocol reduced the number of breech presentations at term, prevented 153 caesarean sections for breech presentation, did not affect maternal or perinatal morbidity or mortality and can be considered an efficient intervention.
DOI: 10.17632/spdcdmvm4g.1
title: Instances for Pm|Mt,Mf|w_jC_j

description: The data set for the scheduling jobs on parallel machines with families and multitasking
DOI: 10.17632/mtmfrgpmdt.1
title: The effects of Lactobacillus hilgardii 4785 and Lactobacillus buchneri 40788 on the microbiome, fermentation, and aerobic stability of corn silage ensiled for various times

description: We evaluated the ability of an inoculant containing a combination of Lactobacillus hilgardii and L. buchneri to modify the microbiome and improve the aerobic stability of whole-plant corn silage after various lengths of ensiling.
DOI: 10.17632/jvwtc23k46.1
title: Elecsys HIV Signal-to-Cutoff

description: Supplementary file 1: Data for 28,952 HIV screening tests on 24,556 unique patients using the Roche Diagnostics Elecsys HIV combi PT assay. All laboratory data involve analysis on serum or plasma. Specific data fields include: unique patient identification number (deidentified), whether result was first or only HIV screening test performed for the specific patient within the retrospective timeframe or a repeat test (further indicating days after initial testing), age in years, sex (as recorded in the electronic medical record), clinical location/unit at time of testing (emergency department, infectious disease clinic, obstetrics, inpatient, or outpatient), HIV screening result (negative or positive), and S/CO value. Supplementary file 2: Data for 163 positive HIV screening tests on 142 unique patients using the Roche Diagnostics Elecsys HIV combi PT assay. All laboratory data involve analysis on serum or plasma. Specific data fields include: unique patient identification number (deidentified), whether result was first or only HIV screening test performed for the specific patient within the retrospective timeframe or a repeat test (further indicating days after initial testing), age in years, sex (as recorded in the electronic medical record), clinical location/unit at time of testing (emergency department, infectious disease clinic, obstetrics, inpatient, or outpatient), S/CO value, result of antibody differentiation assay (Bio-Rad Geenius), results of HIV RNA PCR, days between HIV RNA PCR and the antecedent HIV screen, HIV results classification (false positive, confirmed positive), and clinical notes.
DOI: 10.17632/jvwtc23k46.2
title: Elecsys HIV Signal-to-Cutoff

description: Supplementary file 1: Data for 28,952 HIV screening tests on 24,556 unique patients using the Roche Diagnostics Elecsys HIV combi PT assay. All laboratory data involve analysis on serum or plasma. Specific data fields include: unique patient identification number (deidentified), whether result was first or only HIV screening test performed for the specific patient within the retrospective timeframe or a repeat test (further indicating days after initial testing), age in years, sex (as recorded in the electronic medical record), clinical location/unit at time of testing (emergency department, infectious disease clinic, obstetrics, inpatient, or outpatient), HIV screening result (negative or positive), and S/CO value. Supplementary file 2: Data for 163 positive HIV screening tests on 142 unique patients using the Roche Diagnostics Elecsys HIV combi PT assay. All laboratory data involve analysis on serum or plasma. Specific data fields include: unique patient identification number (deidentified), whether result was first or only HIV screening test performed for the specific patient within the retrospective timeframe or a repeat test (further indicating days after initial testing), age in years, sex (as recorded in the electronic medical record), clinical location/unit at time of testing (emergency department, infectious disease clinic, obstetrics, inpatient, or outpatient), S/CO value, result of antibody differentiation assay (Bio-Rad Geenius), results of HIV RNA PCR, days between HIV RNA PCR and the antecedent HIV screen, HIV results classification (false positive, confirmed positive), and clinical notes.
DOI: 10.17632/8jnjprtsj7.1
title: Ecological Correlates related to adolescent movement behaviors: a latent class analysis

description: Data file referring to the analysis of the manuscript entitled "Ecological Correlates related to adolescent movement behaviors: a latent class analysis". More details regarding the methodology, results and analysis are presented in the manuscript. Observation: Column titles in the date sheet are presented in portuguese language
DOI: 10.17632/h4dmtpgdnf.1
title: Temporal and spatial differences between predicted and measured organic carbon in South Atlantic sediments: constraints to organic facies modelling

description: The evaluation of total organic carbon (TOC) content from wells is a routine practice for assessing source rock potential, and because of this, empirical relationships to estimate TOC content have been proposed and used in organic facies modeling. However, no critical evaluations address how well the available TOC-predictive equations estimate the TOC content in recent and past sediments of the South Atlantic. In order to investigate the performance of the available TOC-predictive equations in this study, we compiled a large South Atlantic dataset composed of new and published modern TOC, dry bulk density, and sedimentation rate with the associated satellite-derived net primary productivity. We repeat this exercise for another time interval using the same input parameters but estimating net primary productivity using transfer functions. Our results indicate that all equations tend to overestimate the modern TOC distribution, mainly at the continental margins and at the edges of the subtropical gyre. In addition, the equations perform better in the eastern compared to the western South Atlantic. The reason for that may rely on the fact that these equations were built under the consideration that an increase in primary productivity must generate an increase in TOC, which is not always the case. The tendency to overestimate the TOC content was also apparent for the downcore data, although with reduced magnitude. The reasons behind the different performances of equations are explained by the way they incorporate the input parameters into their formulations, which is especially relevant for primary productivity, sedimentation rates, and the inclusion of processes such as the carbon flux. Our compilation indicates that the use of a single equation is not adequate to resolve the broad spatial TOC distribution in marine environments and that organic facies modelling software should consider regional aspects in order to produce adequate quantitative estimations of TOC content. Additionally, we used our dataset to investigate the optimal environmental conditions linked to organic-rich sediments in the South Atlantic. Our results show that high productivity, shallow depths, and ideal sedimentation conditions are required for the occurrence of organic-rich sediments and can be viewed as important factors preconditioning the formation of black shales in the South Atlantic.
DOI: 10.17632/hsf33vf567.1
title: A novel mTORC1-GRASP55 signaling axis reshapes the extracellular proteome upon stress. Nüchel et al.

description: Cells communicate with their environment via surface proteins and secreted factors. However, how environmental cues modify the extracellular proteome is not known. Unconventional protein secretion (UPS) is an evolutionarily conserved process, via which proteins reach the cell surface or the extracellular space upon stress. The Golgi-associated GRASP55 protein facilitates unconventional secretion of distinct cargo proteins. Notably, despite the emerging importance of UPS for human disease, its regulation and biological role remain poorly understood. Here, we identify mTORC1 as the first signaling pathway controlling UPS. Mechanistically, mTORC1 phosphorylates GRASP55 directly to retain its Golgi localization, thus revealing a physiological role for mTORC1 at the Golgi. Stimuli that inhibit mTORC1 cause GRASP55 dephosphorylation and relocalization to UPS compartments. Through multiple unbiased proteomic analyses, we comprehensively characterize numerous cargoes that follow this unconventional secretory route to shape the cellular secretome and surfactome. Using MMP2 secretion as a proxy for UPS, we provide important insights on its regulation and physiological role. Collectively, our findings reveal the mTORC1-GRASP55 signaling hub as the integration point in stress signaling upstream of UPS, and as a key coordinator of the cellular adaptation to stress.
DOI: 10.17632/g2v2p48m2k.1
title: Supplemental Material for JAAD Research Letter: "Prognostic value of lymphovascular invasion in early-stage Merkel cell carcinoma: a retrospective analysis in the National Cancer Database"

description: Supplemental material for JAAD research letter: "Prognostic value of lymphovascular invasion in early-stage Merkel cell carcinoma: a retrospective analysis in the National Cancer Database"