cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17188/1712284
title: Materials Data on Sr4Nb2O9 by Materials Project

description: Sr4Nb2O9 crystallizes in the orthorhombic Immm space group. The structure is three-dimensional. there are three inequivalent Sr2+ sites. In the first Sr2+ site, Sr2+ is bonded to twelve O2- atoms to form distorted SrO12 cuboctahedra that share corners with two equivalent SrO12 cuboctahedra, faces with two equivalent SrO12 cuboctahedra, faces with two equivalent SrO6 octahedra, and faces with six NbO6 octahedra. There are a spread of Sr–O bond distances ranging from 2.56–3.03 Å. In the second Sr2+ site, Sr2+ is bonded in a distorted q6 geometry to nine O2- atoms. There are a spread of Sr–O bond distances ranging from 2.64–3.01 Å. In the third Sr2+ site, Sr2+ is bonded to six O2- atoms to form SrO6 octahedra that share corners with six NbO6 octahedra and faces with two equivalent SrO12 cuboctahedra. The corner-sharing octahedra tilt angles range from 0–33°. There are a spread of Sr–O bond distances ranging from 2.39–2.45 Å. There are three inequivalent Nb5+ sites. In the first Nb5+ site, Nb5+ is bonded to six O2- atoms to form NbO6 octahedra that share corners with two equivalent NbO6 octahedra, corners with four equivalent SrO6 octahedra, and faces with four equivalent SrO12 cuboctahedra. The corner-sharing octahedral tilt angles are 0°. There are four shorter (1.97 Å) and two longer (2.09 Å) Nb–O bond lengths. In the second Nb5+ site, Nb5+ is bonded to six O2- atoms to form distorted NbO6 octahedra that share corners with two equivalent NbO6 octahedra, corners with four equivalent SrO6 octahedra, and faces with two equivalent SrO12 cuboctahedra. The corner-sharing octahedra tilt angles range from 0–33°. There are a spread of Nb–O bond distances ranging from 1.90–2.34 Å. In the third Nb5+ site, Nb5+ is bonded to six O2- atoms to form NbO6 octahedra that share corners with six NbO6 octahedra and faces with four equivalent SrO12 cuboctahedra. The corner-sharing octahedral tilt angles are 0°. There are four shorter (1.98 Å) and two longer (2.06 Å) Nb–O bond lengths. There are five inequivalent O2- sites. In the first O2- site, O2- is bonded in a 6-coordinate geometry to four Sr2+ and two Nb5+ atoms. In the second O2- site, O2- is bonded in a 5-coordinate geometry to four Sr2+ and one Nb5+ atom. In the third O2- site, O2- is bonded in a 1-coordinate geometry to four Sr2+ and two Nb5+ atoms. In the fourth O2- site, O2- is bonded in a 2-coordinate geometry to three Sr2+ and one Nb5+ atom. In the fifth O2- site, O2- is bonded in a 2-coordinate geometry to five Sr2+ and one Nb5+ atom.
DOI: 10.17188/1712285
title: Materials Data on CuPd2Au by Materials Project

description: Pd2AuCu crystallizes in the orthorhombic Immm space group. The structure is one-dimensional and consists of two Pd2AuCu ribbons oriented in the (1, 0, 0) direction. Pd is bonded in a linear geometry to one Au and one Cu atom. The Pd–Au bond length is 2.55 Å. The Pd–Cu bond length is 2.33 Å. Au is bonded in a linear geometry to two equivalent Pd atoms. Cu is bonded in a linear geometry to two equivalent Pd atoms.
DOI: 10.6084/m9.figshare.21622784
title: Additional file 32 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 32. Sequences of barcodes used for library preparation of PacBio sequencing samples in FASTA format.
DOI: 10.6084/m9.figshare.21622781
title: Additional file 31 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 31. List showing names of barcodes used for each PacBio sequencing sample.
DOI: 10.6084/m9.figshare.21622778
title: Additional file 30 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 30. Enriched GO terms in the biological pathway ontology for eccDNA-absent genes. The first column lists the GO term, the second column lists the number of genes annotated with each term, the third column lists the number of genes observed in the eccDNA-absent category, the fourth column list the number of genes expected in that category, the fifth column shows is a description of the go term, the sixth column lists the Chi-square value for that GO term, and the final column lists the ratio of the observed number of genes in the eccDNA-associated category divided by the expected number of genes in that category.
DOI: 10.6084/m9.figshare.21622776
title: Additional file 2 of Economic evaluation of COVID-19 rapid antigen screening programs in the workplace

description: Additional file 2. Details of costs.
DOI: 10.6084/m9.figshare.21622772
title: Additional file 2 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 2. List of eccDNA forming regions called using Illumina circularome sequencing data for M. oryzae in this study. The first column describes the sample the eccDNA forming region was called with, the next three columns represent the genomic coordinates of the eccDNA forming region, and the last column represents the number of junction split reads used to call the eccDNA forming region.
DOI: 10.6084/m9.figshare.21622769
title: Additional file 29 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 29. Enriched GO terms in the molecular function ontology for eccDNA-absent genes. The first column lists the GO term, the second column lists the number of genes annotated with each term, the third column lists the number of genes observed in the eccDNA-absent category, the fourth column list the number of genes expected in that category, the fifth column shows is a description of the go term, the sixth column lists the Chi-square value for that GO term, and the final column lists the ratio of the observed number of genes in the eccDNA-associated category divided by the expected number of genes in that category.
DOI: 10.6084/m9.figshare.21622766
title: Additional file 28 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 28. Enriched GO terms in the cellular components ontology for eccDNA-absent genes. The first column lists the GO term, the second column lists the number of genes annotated with each term, the third column lists the number of genes observed in the eccDNA-absent category, the fourth column list the number of genes expected in that category, the fifth column shows is a description of the go term, the sixth column lists the Chi-square value for that GO term, and the final column lists the ratio of the observed number of genes in the eccDNA-associated category divided by the expected number of genes in that category.
DOI: 10.6084/m9.figshare.21622763
title: Additional file 27 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 27. List of GenBank accessions for the genomes of M. oryzae used in this study to search for eccDNA-mediated translocations.
DOI: 10.6084/m9.figshare.21622760
title: Additional file 26 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 26. List of small, genic deletions identified in the M. oryzae Guy11 genome. The first three columns describe genomic coordinates of the deletion, the fourth column is the missing gene’s ID, and the last column is the name of the genome where the deletion is present.
DOI: 10.15151/esrf-es-947341028
title: New insights into the growth of the Neanderthal lineage

description: The last decade has seen an intense scientific debate on Neanderthal lineage growth pattern. The pioneering use of synchrotron imaging on fossils teeth allowed for the first time to record neanderthal dental growth in a non-destructive way. However, relatively few samples have been analyzed and variability in the growth pattern and associated evolutionary mechanisms are still largely unknown. To answer these questions, we collected a large sample of unpublished and invaluable fossil teeth of the Neanderthal lineage in Europe. We have also selected modern human deciduous teeth with the specific focus of investigating their family relationships based on the heritability of dental growth biorhythms which are under strong genetic control. ID19 is the only hard X-ray beamline in Europe enabling to image dental hard tissues microstructure for paleoanthropology with high coherence, low dose, high energy photons, a large field-of-view, and using phase contrast µCT.
DOI: 10.6084/m9.figshare.21622757
title: Additional file 25 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 25. List of GenBank accessions for the genomes of rice-infecting M. oryzae isolates used in this study for gene annotation.
DOI: 10.6084/m9.figshare.21622754
title: Additional file 24 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 24. Enriched GO terms in the biological pathway ontology for eccDNA-associated genes. The first column lists the GO term, the second column lists the number of genes annotated with each term, the third column lists the number of genes observed in the eccDNA-associated category, the fourth column list the number of genes expected in that category, the fifth column shows is a description of the go term, the sixth column lists the Chi-square value for that GO term, and the final column lists the ratio of the observed number of genes in the eccDNA-associated category divided by the expected number of genes in that category.
DOI: 10.34740/kaggle/dsv/4586418
title: Mahanagar Yatayat Dataset
DOI: 10.6084/m9.figshare.21622751
title: Additional file 23 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 23. Enriched GO terms in the molecular function ontology for eccDNA-associated genes. The first column lists the GO term, the second column lists the number of genes annotated with each term, the third column lists the number of genes observed in the eccDNA-associated category, the fourth column lists the number of genes expected in that category, the fifth column shows is a description of the go term, the sixth column lists the Chi-square value for that GO term, and the final column lists the ratio of the observed number of genes in the eccDNA-associated category divided by the expected number of genes in that category.
DOI: 10.6084/m9.figshare.21622748
title: Additional file 22 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 22. Enriched GO terms in the cellular components ontology for eccDNA-associated genes. The first column lists the GO term, the second column lists the number of genes annotated with each term, the third column lists the number of genes observed in the eccDNA-associated category, the fourth column list the number of genes expected in that category, the fifth column shows is a description of the go term, the sixth column lists the Chi-square value for that GO term, and the final column lists the ratio of the observed number of genes in the eccDNA-associated category divided by the expected number of genes in that category.
DOI: 10.6084/m9.figshare.21622745
title: Additional file 21 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 21. List of genes annotated in the M. oryzae Guy11 genome along with other information discussed in this study for each gene. The first three columns describe the genomic coordinates of the gene, the fourth column is the gene’s ID, the fifth column describes whether the gene was predicted to be an effector, the sixth column lists its name if it is a known effector, the seventh column lists the name of the protein in the M. oryzae 70-15 proteome, the eighth column describes whether it is an eccDNA-associated or eccDNA-absent gene, and the last column describes whether this gene was kept in all rice-infecting M. oryzae genomes analyzed.
DOI: 10.6084/m9.figshare.21622742
title: Additional file 20 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 20. List of eccDNA forming regions called using Illumina circularome sequencing data for S. cerevisiae cells from the deletion collection treated with zeocin published by Møller et al. [8]. The first column describes the sample the eccDNA was called with, the next three columns represent the genomic coordinates of the eccDNA forming region, and the last column represents the number of junction split reads used to call the eccDNA forming region.
DOI: 10.6084/m9.figshare.21622736
title: Additional file 19 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 19. List of eccDNA forming regions called using Illumina circularome sequencing data for S. cerevisiae cells from the deletion collection published by Møller et al. [8]. The first column describes the sample the eccDNA was called with, the next three columns represent the genomic coordinates of the eccDNA forming region, and the last column represents the number of junction split reads used to call the eccDNA forming region.
DOI: 10.6084/m9.figshare.21622733
title: Additional file 18 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 18. List of eccDNA forming regions called using Illumina circularome sequencing data for S. cerevisiae GAP1circle cells published by Møller et al. [8]. The first column describes the sample the eccDNA was called with, the next three columns represent the genomic coordinates of the eccDNA forming region, and the last column represents the number of junction split reads used to call the eccDNA forming region.
DOI: 10.6084/m9.figshare.21622730
title: Additional file 17 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 17. List of eccDNA forming regions called using Illumina circularome sequencing data for S. cerevisiae wild type cells published by Møller et al. [7]. The first column describes the sample the eccDNA was called with, the next three columns represent the genomic coordinates of the eccDNA forming region, and the last column represents the number of junction split reads used to call the eccDNA forming region.
DOI: 10.6084/m9.figshare.21622727
title: Additional file 16 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 16. List of eccDNA forming regions called using Illumina circularome sequencing data for A. thaliana flower tissue published by Wang et al. [5]. The first column describes the sample the eccDNA was called with, the next three columns represent the genomic coordinates of the eccDNA forming region, and the last column represents the number of junction split reads used to call the eccDNA forming region.
DOI: 10.6084/m9.figshare.21622724
title: Additional file 15 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 15. List of eccDNA forming regions called using Illumina circularome sequencing data for A. thaliana stem tissue published by Wang et al. [5]. The first column describes the sample the eccDNA was called with, the next three columns represent the genomic coordinates of the eccDNA forming region, and the last column represents the number of junction split reads used to call the eccDNA forming region.
DOI: 10.6084/m9.figshare.21622721
title: Additional file 14 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 14. List of eccDNA forming regions called using Illumina circularome sequencing data for A. thaliana root tissue published by Wang et al. [5]. The first column describes the sample the eccDNA was called with, the next three columns represent the genomic coordinates of the eccDNA forming region, and the last column represents the number of junction split reads used to call the eccDNA forming region.
DOI: 10.6084/m9.figshare.21622718
title: Additional file 13 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 13. List of eccDNA forming regions called using Illumina circularome sequencing data for A. thaliana leaf tissue published by Wang et al. [5]. The first column describes the sample the eccDNA was called with, the next three columns represent the genomic coordinates of the eccDNA forming region, and the last column represents the number of junction split reads used to call the eccDNA forming region.
DOI: 10.6084/m9.figshare.21622715
title: Additional file 12 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 12. List of eccDNA forming regions called using Illumina circularome sequencing data for A. thaliana epi12 mutant tissue published by Lanciano et al. [6]. The first column describes the sample the eccDNA was called with, the next three columns represent the genomic coordinates of the eccDNA forming region, and the last column represents the number of junction split reads used to call the eccDNA forming region.
DOI: 10.6084/m9.figshare.21622712
title: Additional file 11 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 11. List of eccDNA forming regions called using Illumina circularome sequencing data for A. thaliana wild type tissue published by Lanciano et al. [6]. The first column describes the sample the eccDNA was called with, the next three columns represent the genomic coordinates of the eccDNA forming region, and the last column represents the number of junction split reads used to call the eccDNA forming region.
DOI: 10.6084/m9.figshare.21622709
title: Additional file 10 of The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

description: Additional file 10. List of eccDNA forming regions called using Illumina circularome sequencing data for O. sativa callus tissue published by Lanciano et al. [6]. The first column describes the sample the eccDNA was called with, the next three columns represent the genomic coordinates of the eccDNA forming region, and the last column represents the number of junction split reads used to call the eccDNA forming region.
DOI: 10.6084/m9.figshare.21622656
title: Additional file 1 of Daytime fluctuations of endurance performance in young soccer players: a randomized cross-over trial

description: Additional file 1. Exercise data of soccer players.
DOI: 10.6084/m9.figshare.21622608
title: Additional file 9 of Folate regulates RNA m5C modification and translation in neural stem cells

description: Additional file 9. Source codes used to generate figures.
DOI: 10.6084/m9.figshare.21622599
title: Additional file 7 of Folate regulates RNA m5C modification and translation in neural stem cells

description: Additional file 7. Combined raw data, with each figure on a spreadsheet.
DOI: 10.6084/m9.figshare.21622593
title: Additional file 6 of Folate regulates RNA m5C modification and translation in neural stem cells

description: Additional file 6: Table 5. List of high-confidence m5C sites in mouse NSCs.
DOI: 10.6084/m9.figshare.21622587
title: Additional file 5 of Folate regulates RNA m5C modification and translation in neural stem cells

description: Additional file 5: Table 4. List of differentially translated genes.
DOI: 10.6084/m9.figshare.21622584
title: Additional file 4 of Folate regulates RNA m5C modification and translation in neural stem cells

description: Additional file 4: Table 3. List of differentially expressed genes.
DOI: 10.6084/m9.figshare.21622581
title: Additional file 3 of Folate regulates RNA m5C modification and translation in neural stem cells

description: Additional file 3: Table 2. RNA expression level of total and polysome mRNA-seq libraries.
DOI: 10.6084/m9.figshare.21622578
title: Additional file 2 of Folate regulates RNA m5C modification and translation in neural stem cells

description: Additional file 2: Table 1. Library statistics.
DOI: 10.6084/m9.figshare.21623485
title: Evidence, or not, for late Tonian break-up of Rodinia? The Dalradian Supergroup, Scotland

description: Raw data
DOI: 10.6084/m9.figshare.21623485.v1
title: Evidence, or not, for late Tonian break-up of Rodinia? The Dalradian Supergroup, Scotland

description: Raw data
DOI: 10.6084/m9.figshare.21622497
title: Additional file 1 of Bifidobacterium animalis subsp. lactis Probio-M8 undergoes host adaptive evolution by glcU mutation and translocates to the infant’s gut via oral-/entero-mammary routes through lactation

description: Additional file 1: Supplementary Table 1. Information of 11 healthy mother-infant pairs and sample collection. Supplementary Table 2. Genome information of 24 isolates recovered from M8 dry powder. Supplementary Table 3. Genome information of Bifidobacterium animalis subsp. lactis recovered from mother-infant pairs. Supplementary Table 4. Information of metagenome-assembled Bifidobacterium animalis subsp. lactis genomes. Supplementary Table 5. Information of single nucleotide polymorphisms (SNPs) identified in 195 homologous isolates of M8 recovered from mother-infant pairs. Supplementary Table 6. Information of single nucleotide polymorphisms (SNPs) in the glcU gene. Supplementary Table 7. Information of metagenomic data of maternal and infant fecal samples.
DOI: 10.6084/m9.figshare.21622457
title: Additional file 4 of Is the cholesterol-perfluoroalkyl substance association confounded by dietary fiber intake?: a Bayesian analysis of NHANES data with adjustment for measurement error in fiber intake

description: Additional file 4.
DOI: 10.6084/m9.figshare.21622451
title: Additional file 2 of Is the cholesterol-perfluoroalkyl substance association confounded by dietary fiber intake?: a Bayesian analysis of NHANES data with adjustment for measurement error in fiber intake

description: Additional file 2.
DOI: 10.6084/m9.figshare.21622448
title: Additional file 1 of Is the cholesterol-perfluoroalkyl substance association confounded by dietary fiber intake?: a Bayesian analysis of NHANES data with adjustment for measurement error in fiber intake

description: Additional file 1.