cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.u55ptq
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helichrysum tanaiticum P.A.Smirn."
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239396-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dr6hsm
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Impatiens rhombifolia Y.Q.Lu & Y.L.Chen"
 ]
}

 The dataset includes 43 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252703-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rzga58
title: Occurrence Download

description: A dataset containing 434 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elaphoglossum bellermannianum (Klotzsch) T.Moore"
 ]
}

 The dataset includes 434 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252715-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13952356
title: Instantaneous Bayesian imaging for TEM

description: Supporting data for Paper: Instantaneous Bayesian imaging of large-scale transient electromagnetic data using probabilistic neural networks

here we provide the FloaTEM survey data in Lake ISEO (funded by Acque Bresciane S.r.l. SB) and its STD, as well as the inversion results obtained using EEMverter and probabilistic neural network, and provide a reference code for cPNN.
DOI: 10.5281/zenodo.13952357
title: Instantaneous Bayesian imaging for TEM

description: Supporting data for Paper: Instantaneous Bayesian imaging of large-scale transient electromagnetic data using probabilistic neural networks

here we provide the FloaTEM survey data in Lake ISEO (funded by Acque Bresciane S.r.l. SB) and its STD, as well as the inversion results obtained using EEMverter and probabilistic neural network, and provide a reference code for cPNN.
DOI: 10.6084/m9.figshare.27262560
title: <b>Dual antimicrobial mechanism of a synthetic retinoid targeting the outer membrane of </b><b><i>Porphyromonas gingivalis</i></b>

description: Most antibacterial agents currently used to treat periodontal disease are broad-spectrum, which may induce bacterial antibiotic resistance and exacerbate dysbiosis in the oral cavity. Prior efforts to develop antibiotics targeting <i>P. gingivalis</i> have failed because of its unique outer membrane barrier. Designing more effective and specific antimicrobial agents are essential to address this challenge. This study identified that CD1530 uniquely penetrate the outer membranes of <i>P. gingivalis</i>. Notably, CD1530 exists in neutral and anionic forms at physiologic pH. This abrogates the resistance of <i>P. gingivalis</i> to cationic membrane-active antimicrobial agents. Moreover, CD1530 inhibits different metabolic activities, causing energy depletion and bacterial death. These findings suggest that CD1530 may be useful for overcoming the physical barriers of the outer membrane of <i>P. gingivalis</i>. The present work provides valuable insights for the development of uncharged, membrane-targeting therapeutics to combat a broader range of bacterial infections.
DOI: 10.6084/m9.figshare.27262560.v1
title: <b>Dual antimicrobial mechanism of a synthetic retinoid targeting the outer membrane of </b><b><i>Porphyromonas gingivalis</i></b>

description: Most antibacterial agents currently used to treat periodontal disease are broad-spectrum, which may induce bacterial antibiotic resistance and exacerbate dysbiosis in the oral cavity. Prior efforts to develop antibiotics targeting <i>P. gingivalis</i> have failed because of its unique outer membrane barrier. Designing more effective and specific antimicrobial agents are essential to address this challenge. This study identified that CD1530 uniquely penetrate the outer membranes of <i>P. gingivalis</i>. Notably, CD1530 exists in neutral and anionic forms at physiologic pH. This abrogates the resistance of <i>P. gingivalis</i> to cationic membrane-active antimicrobial agents. Moreover, CD1530 inhibits different metabolic activities, causing energy depletion and bacterial death. These findings suggest that CD1530 may be useful for overcoming the physical barriers of the outer membrane of <i>P. gingivalis</i>. The present work provides valuable insights for the development of uncharged, membrane-targeting therapeutics to combat a broader range of bacterial infections.
DOI: 10.7916/zgzd-6t74
title:  GRID3 UGA - Settlement Extents v3.0
DOI: 10.15468/dl.ce39de
title: Occurrence Download

description: A dataset containing 2560 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus coccinea Münchh."
 ]
}

 The dataset includes 2560 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012249-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9nz74w
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Petalostemum Michx."
 ]
}

 The dataset includes 70 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012250-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yyz2s5
title: Occurrence Download

description: A dataset containing 168115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Elevation 1085.0-2876.0m",
 "OccurrenceStatus is Present",
 "Year 1950-2024"
 ]
}

 The dataset includes 168115 records from 1578 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012164-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8378887
title: Datasets of the DIMet manuscript

description: Datasets for reproducing the results of the manuscript "DIMet : An open-source tool for Differential analysis of targeted Isotope-labeled Metabolomics data". DIMet tool is available here, and the tool documentation is accessible in the DIMet wiki page and in its Galaxy site.


If running in command-line version, download, decompress it and follow the instructions of the documentation in the DIMet wiki page.



	
		
			
			
  Users of the Galaxy version of DIMet:

			

				
download and decompress (unzip) the .zip file.
				
within the 'datasets_manuscript_DIMet/' there is a sub-folder data/, preserve.
				
within 'datasets_manuscript_DIMet/' there is a sub-folder config/, the user can delete it as it is not used in the Galaxy version.
				
use the .csv files that are provided in data/ . The specific .csv files to be given as input are explained in each 'dimet_' module in Galaxy.
DOI: 10.5281/zenodo.10925786
title: Datasets of the DIMet manuscript

description: Datasets for reproducing the results of the manuscript "DIMet : An open-source tool for Differential analysis of targeted Isotope-labeled Metabolomics data". DIMet tool is available here, and the tool documentation is accessible in the DIMet wiki page and in its Galaxy site.

  Users of the Galaxy version of DIMet:



download and decompress (unzip) the .zip file.

within the 'datasets_manuscript_DIMet/' there is a sub-folder data/, preserve.

within 'datasets_manuscript_DIMet/' there is a sub-folder config/, the user can delete it as it is not used in the Galaxy version.

use the .csv files that are provided in data/ . The specific .csv files to be given as input are explained in each 'dimet_' module in Galaxy.

check  metadata_endo_ldh.csv and metadata_timeseries.csv files: if all the content has quotes (") for delimiting the strings, please edit the file in a plain text editor (e.g. Notepad, Gedit, etc) and delete such quotes (replace all " by no character).  These quotes (") in the samples metadata, which are tolerated in the command line version, are not allowed in the galaxy version.


  Users of the command-line version of DIMet:



download, decompress it and follow the instructions of the documentation in the DIMet wiki page.
description: version 0.4 adds the bivariate analysis on the Timeseries dataset
DOI: 10.15468/dl.nvstoa
title: Occurrence Download

description: A dataset containing 932 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Colubrina elliptica (Sw.) Brizicky & W.L.Stern"
 ]
}

 The dataset includes 932 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007198-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xwasr3
title: Occurrence Download

description: A dataset containing 1868 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podarcis lilfordi (Günther, 1874)"
 ]
}

 The dataset includes 1868 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007224-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10579862
title: Datasets of the DIMet manuscript

description: Datasets for reproducing the results of the manuscript "DIMet : An open-source tool for Differential analysis of targeted Isotope-labeled Metabolomics data". DIMet tool is available here, and the tool documentation is accessible in the DIMet wiki page and in its Galaxy site.

  Users of the Galaxy version of DIMet:



download and decompress (unzip) the .zip file.

within the 'datasets_manuscript_DIMet/' there is a sub-folder data/, preserve.

within 'datasets_manuscript_DIMet/' there is a sub-folder config/, the user can delete it as it is not used in the Galaxy version.

use the .csv files that are provided in data/ . The specific .csv files to be given as input are explained in each 'dimet_' module in Galaxy.

check  metadata_endo_ldh.csv and metadata_timeseries.csv files: if all the content has quotes (") for delimiting the strings, please edit the file in a plain text editor (e.g. pad, gedit, etc) and delete such quotes (replace all " by no character).  These quotes (") in the samples metadata, which are tolerated in the command line version, are not allowed in the galaxy version.


  Users of the command-line version of DIMet:



download, decompress it and follow the instructions of the documentation in the DIMet wiki page.
DOI: 10.5281/zenodo.8378886
title: Datasets of the DIMet manuscript

description: Datasets for reproducing the results of the manuscript "DIMet : An open-source tool for Differential analysis of targeted Isotope-labeled Metabolomics data". DIMet tool is available here, and the tool documentation is accessible in the DIMet wiki page and in its Galaxy site.

  Users of the Galaxy version of DIMet:



download and decompress (unzip) the .zip file.

within the 'datasets_manuscript_DIMet/' there is a sub-folder data/, preserve.

within 'datasets_manuscript_DIMet/' there is a sub-folder config/, the user can delete it as it is not used in the Galaxy version.

use the .csv files that are provided in data/ . The specific .csv files to be given as input are explained in each 'dimet_' module in Galaxy.

check  metadata_endo_ldh.csv and metadata_timeseries.csv files: if all the content has quotes (") for delimiting the strings, please edit the file in a plain text editor (e.g. Notepad, Gedit, etc) and delete such quotes (replace all " by no character).  These quotes (") in the samples metadata, which are tolerated in the command line version, are not allowed in the galaxy version.


  Users of the command-line version of DIMet:



download, decompress it and follow the instructions of the documentation in the DIMet wiki page.
description: version 0.4 adds the bivariate analysis on the Timeseries dataset
DOI: 10.15468/dl.84qwtt
title: Occurrence Download

description: A dataset containing 1893251 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 1893251 records from 1365 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007264-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c8cnlk
title: Occurrence Download

description: A dataset containing 1617 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "Geometry POLYGON((-99.330139 20.766386,-99.330139 20.362652,-98.794555 20.362652,-98.794555 20.766386,-99.330139 20.766386))"
 ]
}

 The dataset includes 1617 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007198-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.busgdd
title: Occurrence Download

description: A dataset containing 980 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lepisiota capensis (Mayr, 1862)"
 ]
}

 The dataset includes 980 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007481-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.joommh
title: Occurrence Download

description: A dataset containing 148793 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anser brachyrhynchus Baillon, 1834"
 ]
}

 The dataset includes 148793 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007198-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jeyvv8
title: Occurrence Download

description: A dataset containing 34137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Littorina littorea (Linnaeus, 1758)",
 "Year 1000-2023"
 ]
}

 The dataset includes 34137 records from 239 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020496-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fbjoom
title: Occurrence Download

description: A dataset containing 7442 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tetraonid line transect surveys from Norway: Data from Finnmarkseiendommen (FeFo)"
 ]
}

 The dataset includes 7442 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002737-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w86tes
title: Occurrence Download

description: A dataset containing 220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alchemilla nemoralis Alechin",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 220 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070210-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cshcuu
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "TaxonKey is Cercopagis pengoi (Ostroumov, 1891)"
 ]
}

 The dataset includes 46 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0275824-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nyrtry
title: Occurrence Download

description: A dataset containing 2612 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mimosa quadrivalvis L.",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 2612 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009445-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w6t53k
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alchemilla marsica Buser",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070171-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjeuuo
title: Occurrence Download

description: A dataset containing 1118 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Imperata arundinacea Cirillo",
 "TaxonKey is Saccharum koenigii Retz.",
 "TaxonKey is Imperata cylindrica var. major (Nees) C.E.Hubb.",
 "TaxonKey is Arundo epigeios L.",
 "TaxonKey is Imperata cylindrica var. africana (Andersson) C.E.Hubb.",
 "TaxonKey is Imperata cylindrica var. koenigii (Retz.) Perkins",
 "TaxonKey is Imperata koenigii (Retz.) P.Beauv."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1118 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009445-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.exwr96
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Ophiothrix purpurea von Martens, 1867"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002743-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n7m34r
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anaphalis cavei Chatterjee"
 ]
}

 The dataset includes 72 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009758-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ory1db
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia asepala Maslin"
 ]
}

 The dataset includes 24 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010625-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8q5h2b
title: Occurrence Download

description: A dataset listing the 507 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-90.77405 14.46387,-90.77657 14.43994,-90.75539 14.42627,-90.72817 14.42139,-90.70951 14.42871,-90.68833 14.44532,-90.6964 14.46924,-90.72716 14.48145,-90.75993 14.48145,-90.77405 14.46387))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 507 records were derived from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022376-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9gqcsb
title: Occurrence Download

description: A dataset containing 426 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platanista minor Owen, 1853"
 ]
}

 The dataset includes 426 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026484-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ah7vyh
title: Occurrence Download

description: A dataset containing 305 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Rohrmeistereiplateau und angrenzendes Gebiet"
 ]
}

 The dataset includes 305 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010625-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axjtah
title: Occurrence Download

description: A dataset containing 1657 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Avena byzantina K.Koch"
 ]
}

 The dataset includes 1657 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039327-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.twawzb
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Nesonycteris fardoulisi fardoulisi"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006286-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9sxbja
title: Occurrence Download

description: A dataset containing 987 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tanygnathus lucionensis (Linnaeus, 1766)"
 ]
}

 The dataset includes 987 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010625-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zu8zjr
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agrostophyllum brevipes King & Pantl."
 ]
}

 The dataset includes 27 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022388-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.