cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15486/ngt/2377278
title: Comparative analysis of nutrient concentrations in generalist and specialist tree species and soils, Manaus, Brazil

description: This dataset was collected near Manaus, Brazil, at ZF-2 site, inside the North-South transect plots from 20221011 to 20221020. Measurements were made on specialists and generalist tree species along topographic gradient (in upland high-clay content soils of plateaus and high sandy content and partially flooded soils of valleys). We selected nine species (with four replicates each, totaling 35 individuals) occurring in different topographic positions: three plateau specialists, three valley specialists, and three generalists, where leaf and trunk samples were collected from each individual, and soil samples for carbon and nutrient analysis and quantification. Three soil pits were opened around each sample tree, about one meter apart (total of 105 soil pits each 60-cm deep), where soil samples were collected at four depths: 0-5, 5-10, 10-30 and 30-50 cm. In each of the three pits around each tree, one single sample was taken at each depth and combined to obtain a composite sample per depth per individual tree (35 trees × 4 depths = 140 soil samples). The files “Plant_Nutrient_Concentrations_NS_Transect_Manaus.csv” and “Soil_Nutrient_Concentrations_NS_Transect_Manaus.csv” contain the nutrient concentration data from plant and soil material, respectively. Additionally, the file “Sample_Info.csv” contains details about each variable including units and data type. The file “Species_Info.csv” includes information about each sampled individual, such as species, family, diameter at the breast height (DBH), and more. The dataset is ready to be used in any programming language like python or R.
This dataset was originally published on the NGEE Tropics Archive and is being mirrored on ESS-DIVE for long-term archival
Acknowledgement: Funding for NGEE-Tropics data resources was provided by the U.S. Department of Energy Office of Science, Office of Biological and Environmental Research.
DOI: 10.15468/dl.ekcbbt
title: Occurrence Download

description: A dataset containing 8021 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stigmochelys pardalis",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset includes 8021 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008211-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18343832
title: Connecting the Dots: A Machine Learning Ready Dataset for Ionospheric Forecasting Models

description: Dataset to support the work "Connecting the Dots: A Machine Learning Ready Dataset for Ionospheric Forecasting Models"

Description can be found in the README.md file of the dataset.

To access the dataset, go here: https://gofile.me/7O2fB/3rDfVCOAI (soon to be publicly accessible). The uploaded dataset here only represents the directory structure of the true dataset.
DOI: 10.5281/zenodo.18343833
title: Connecting the Dots: A Machine Learning Ready Dataset for Ionospheric Forecasting Models

description: Dataset to support the work "Connecting the Dots: A Machine Learning Ready Dataset for Ionospheric Forecasting Models"

Description can be found in the README.md file of the dataset.

To access the dataset, go here: https://gofile.me/7O2fB/3rDfVCOAI (soon to be publicly accessible). The uploaded dataset here only represents the directory structure of the true dataset.
DOI: 10.15468/dl.wm5apu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barbus barbus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1815",
 "Year is less than or equal to 1819"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008212-260120142942310/datasets/export for details.
DOI: 10.5281/zenodo.18341098
title: FRS-KG

description: The Facility Registry Service Knowledge Graph (FRS-KG) instantiates facility data for the 48 contiguous states from the U.S. EPA Facility Registry Service (FRS) along with their NAICS codes in a turtle format RDF based knowledge graph. It uses the Facilities and Industries Ontology (FIO) as the main schema, extended by concepts from GeoSPARQL, DublinCore, and Prov Ontologies. Inferences are also instantiated using the owl2 RL ruleset. The dataset covers over 4.8 million facilities in the coterminus United States as of November 2025.
DOI: 10.5281/zenodo.18341099
title: FRS-KG

description: The Facility Registry Service Knowledge Graph (FRS-KG) instantiates facility data for the 48 contiguous states from the U.S. EPA Facility Registry Service (FRS) along with their NAICS codes in a turtle format RDF based knowledge graph. It uses the Facilities and Industries Ontology (FIO) as the main schema, extended by concepts from GeoSPARQL, DublinCore, and Prov Ontologies. Inferences are also instantiated using the owl2 RL ruleset. The dataset covers over 4.8 million facilities in the coterminus United States as of November 2025.
DOI: 10.15468/dl.9m4hya
title: Occurrence Download

description: A dataset containing 1988 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Laserpitium latifolium",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1988 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008216-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttsddb
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is 6ea87510-0561-11d8-b851-b8a03c50a862",
 "TaxonKey is Melanoplus bakeri",
 "Year 1900-2026"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008215-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqxvfj
title: Occurrence Download

description: A dataset containing 6822 records in GBIF matching the query:
SELECT
 '207' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 8.098015256935714
 AND decimalLatitude &lt;= 12.166598047573723
 AND decimalLongitude &gt;= -70.83067653341342
 AND decimalLongitude &lt;= -65.25780903919457
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 6822 records were derived from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008196-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ey69hc
title: Occurrence Download

description: A dataset containing 95176 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Monitoring populations of Popillia japonica (Newman, 1838) over 16 years in the Azorean Islands"
 ]
}

 The dataset includes 95176 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008200-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q6edzb
title: Occurrence Download

description: A dataset containing 15828 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Testudo graeca",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset includes 15828 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008217-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmqu49
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barbus barbus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1820",
 "Year is less than or equal to 1824"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008219-260120142942310/datasets/export for details.
DOI: 10.15468/dl.jwad99
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lecokia cretica",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 65 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008220-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvxw8y
title: Occurrence Download

description: A dataset containing 4406 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-74.24287 4.57981,-74.2058 4.57981,-74.2058 4.60439,-74.24287 4.60439,-74.24287 4.57981))",
 "OccurrenceStatus is Present",
 "TaxonKey is Chordata",
 "Year 2016-2026"
 ]
}

 The dataset includes 4406 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008221-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nr28nd
title: Occurrence Download

description: A dataset containing 38203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Testudo hermanni",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset includes 38203 records from 250 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008222-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4mfee
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barbus barbus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1825",
 "Year is less than or equal to 1829"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008225-260120142942310/datasets/export for details.
DOI: 10.15468/dl.9p9sdb
title: Occurrence Download

description: A dataset containing 10479 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudoxyrhophiidae"
 ]
}

 The dataset includes 10479 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008224-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9mzkv
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cephaloscyllium cooki Last, Séret & White, 2008"
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001576-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26603404
title: Additional file 2 of Costs of reproduction are present but latent in eusocial bumblebee queens

description: Additional file 2: Table S1. GLMM testing for the effects of treatment and time on queen fertility following R or C treatment. Table S2. Numbers of reads in each mRNA-seq library. Table S3. Numbers of read pairs that pseudoaligned to the B. terrestris transcriptome using Kallisto. Table S4. Gene expression in queen brain following R or C treatment. Table S5. Gene expression in queen fat body following R or C treatment. Table S6. Gene expression in queen ovaries following R or C treatment. Table S7. Statistical overlap of age-related genes between R and C treatments. Table S8. Overlapping genes of age-related genes between R and C treatments. Table S9. GO terms associated with DEGs between R and C treatments. Table S10. Statistical overlap in gene lists between the current study and comparable Drosophila melanogaster studies. Table S11. Overlapping genes in gene lists between current study and comparable Drosophila melanogaster studies; Table S12. Statistical overlap in age-related genes from the current study and ageing-related genes from the Drosophila melanogaster GenAge database. Table S13. Overlapping genes between current study and the Drosophila melanogaster GenAge database. Table S14. Statistical overlap in age-related genes from the current study and ageing-related genes from the TI-J-LiFe network. Table S15. Overlapping genes between the current study and the TI-J-LiFe network. Table S16. Statistical overlap between age-related genes from current study and ageing-related genes from the enzymatic antioxidant gene set. Table S17. Overlapping genes between the current study and the enzymatic antioxidant gene set. Table S18. Differentially expressed genes in queen brain between R and C treatments. Table S19. Differentially expressed genes in queen fat body between R and C treatments. Table S20. Differentially expressed genes in queen ovaries between R and C treatments. Table S21. Statistical overlap in age-related genes within treatment and between treatments. Table S22. Overlapping genes between age-related genes within treatment and between treatments. Table S23. Treatment group, recorded longevity, and sample sizes for each Bombus terrestris queen. Table S24. GLMM model outputs. Table S25. Numbers of read pairs that pseudoaligned to the Bombus terrestris transcriptome using HISAT2. Table S26. Normalised read counts from pseudoalignment of brain mRNA-seq reads against the Holobee barcode database. Table S27. Normalised read counts from pseudoalignment of fat body mRNA-seq reads against the Holobee barcode database. Table S28. Normalised read counts from pseudoalignment of ovaries mRNA-seq reads against the Holobee barcode database.
DOI: 10.6084/m9.figshare.26603404.v1
title: Additional file 2 of Costs of reproduction are present but latent in eusocial bumblebee queens

description: Additional file 2: Table S1. GLMM testing for the effects of treatment and time on queen fertility following R or C treatment. Table S2. Numbers of reads in each mRNA-seq library. Table S3. Numbers of read pairs that pseudoaligned to the B. terrestris transcriptome using Kallisto. Table S4. Gene expression in queen brain following R or C treatment. Table S5. Gene expression in queen fat body following R or C treatment. Table S6. Gene expression in queen ovaries following R or C treatment. Table S7. Statistical overlap of age-related genes between R and C treatments. Table S8. Overlapping genes of age-related genes between R and C treatments. Table S9. GO terms associated with DEGs between R and C treatments. Table S10. Statistical overlap in gene lists between the current study and comparable Drosophila melanogaster studies. Table S11. Overlapping genes in gene lists between current study and comparable Drosophila melanogaster studies; Table S12. Statistical overlap in age-related genes from the current study and ageing-related genes from the Drosophila melanogaster GenAge database. Table S13. Overlapping genes between current study and the Drosophila melanogaster GenAge database. Table S14. Statistical overlap in age-related genes from the current study and ageing-related genes from the TI-J-LiFe network. Table S15. Overlapping genes between the current study and the TI-J-LiFe network. Table S16. Statistical overlap between age-related genes from current study and ageing-related genes from the enzymatic antioxidant gene set. Table S17. Overlapping genes between the current study and the enzymatic antioxidant gene set. Table S18. Differentially expressed genes in queen brain between R and C treatments. Table S19. Differentially expressed genes in queen fat body between R and C treatments. Table S20. Differentially expressed genes in queen ovaries between R and C treatments. Table S21. Statistical overlap in age-related genes within treatment and between treatments. Table S22. Overlapping genes between age-related genes within treatment and between treatments. Table S23. Treatment group, recorded longevity, and sample sizes for each Bombus terrestris queen. Table S24. GLMM model outputs. Table S25. Numbers of read pairs that pseudoaligned to the Bombus terrestris transcriptome using HISAT2. Table S26. Normalised read counts from pseudoalignment of brain mRNA-seq reads against the Holobee barcode database. Table S27. Normalised read counts from pseudoalignment of fat body mRNA-seq reads against the Holobee barcode database. Table S28. Normalised read counts from pseudoalignment of ovaries mRNA-seq reads against the Holobee barcode database.
DOI: 10.6084/m9.figshare.26603407
title: Additional file 3 of Costs of reproduction are present but latent in eusocial bumblebee queens

description: Additional file 3. MultiQC generated report on sample qualities for all brain libraries.
DOI: 10.6084/m9.figshare.26603407.v1
title: Additional file 3 of Costs of reproduction are present but latent in eusocial bumblebee queens

description: Additional file 3. MultiQC generated report on sample qualities for all brain libraries.
DOI: 10.6084/m9.figshare.26603410
title: Additional file 4 of Costs of reproduction are present but latent in eusocial bumblebee queens

description: Additional file 4. MultiQC generated report on sample qualities for all fat body libraries.
DOI: 10.6084/m9.figshare.26603410.v1
title: Additional file 4 of Costs of reproduction are present but latent in eusocial bumblebee queens

description: Additional file 4. MultiQC generated report on sample qualities for all fat body libraries.
DOI: 10.6084/m9.figshare.26603413
title: Additional file 5 of Costs of reproduction are present but latent in eusocial bumblebee queens

description: Additional file 5. MultiQC generated report on sample qualities for all ovaries libraries.
DOI: 10.6084/m9.figshare.26603413.v1
title: Additional file 5 of Costs of reproduction are present but latent in eusocial bumblebee queens

description: Additional file 5. MultiQC generated report on sample qualities for all ovaries libraries.
DOI: 10.5061/dryad.z8w9ghx9s
title: Data from: Life-history theory provides a framework for detecting resource limitation: a test of the Nutritional Buffer Hypothesis

description: For ungulates and other long-lived species, life-history theory predicts
 that nutritional reserves are allocated to reproduction in a
 state-dependent manner because survival is highly conserved. Further, as
 per-capita food abundance and nutritional reserves decline (i.e.,
 density-dependence intensifies), reproduction and recruitment become
 increasingly sensitive to weather. Thus, the degree to which weather
 influences vital rates should be associated with proximity to nutritional
 carrying capacity—a notion that we refer to as the Nutritional Buffer
 Hypothesis. We tested the Nutritional Buffer Hypothesis using six moose
 (Alces alces) populations that varied in calf recruitment (33-69 calves/
 100 cows). We predicted that populations with high calf recruitment were
 nutritionally buffered against the effects of unfavorable weather, and
 thus were below nutritional carrying capacity. We applied a suite of tools
 to quantify habitat and nutritional condition of each population and found
 that increased browse condition, forage quality, and body fat were
 associated with increased pregnancy and calf recruitment, thereby
 providing multiple lines of evidence that declines in calf recruitment
 were underpinned by resource limitation. From 2001 to 2015, recruitment
 was more sensitive to interannual variation in weather (e.g., winter
 severity, drought) and plant phenology (e.g., duration of spring) for
 populations with reduced browse condition, forage quality, and body fat,
 suggesting these populations lacked the nutritional reserves necessary to
 buffer demographic performance against the effects of unfavorable weather.
 Further, average within-population calf recruitment was determined by
 regional climatic variation, suggesting that the pattern of reduced
 recruitment near the southern range boundary of moose stems from an
 interaction between climate and resource limitation. When coupled with
 information on habitat, nutrition, weather, and climate, life-history
 theory provides a framework to estimate nutritional limitation, proximity
 to nutritional carrying capacity, and impacts of climate change for
 ungulates.
description: see manuscript and its supplemental materials
description: see ReadMe.rtf