cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3836503
title: User Experience Optimization Experiment Simulations

description: # The `uxo_sim` Package A package for simulations of data matching industry UX optimization experiments, as discussed in: ```<br> @article{van_adelsberg_modeling_2019,<br> title = {Modeling {A}/{B} {Test} {Data} is {Hard}: {Effects} of {Overdispersion}, {RandomWalks}, and {Cointegration}},<br> language = {en},<br> journal = {NeurIPS 2019 Workshop on Robust AI in Financial Services: Data, Fairness, Explainability, Trustworthiness, and Privacy},<br> author = {van Adelsberg, Matthew and Sweeney, Mackenzie},<br> month = dec,<br> year = {2019}<br> }<br> ``` The code for running the simulations is included, along with figures and CSV files for each of three specific simulation runs that are used in a publication currently under review for ICML 2020. ## Packages: 1. `data`: code for running the simulations to produce datasets<br> 2. `viz`: code for visualizing the simulation outputs ## Scripts: 1. `save_datasets`: save CSV for each simulated dataset in the `inventory`<br> 2. `save_figs`: save PNG figure for each simulated dataset in `plots` ## Simulation Datasets: ### `fixed_effects_od_20_21_seed27` Data is simulated from a beta-binomial distribution with overdispersion parameter `gamma=0.01` for each of the two treatments and rates `theta=0.20` and `theta=0.21`. This corresponds to beta distribution parameters `alpha, beta = 19.8, 79.2` and `alpha, beta = 20.79, 78.21`. ### `drift_down_then_up` Data is simulated from a beta-binomial distribution with overdispersion parameter `gamma=0.01` for each of the two treatments. The rates start at `theta=0.20` and `theta=0.21` and then: 1. decrease by 0.005 each day for 20 days<br> 2. increase by 0.005 each day for 30 days<br> 3. stay constant for 10 days The corresponding beta distribution parameters on each day are a function of `theta, gamma` and can be obtained via this function (implemented in `uxo_sims.data.simulations`:<br> ```python<br> def alpha_beta_from_gamma_theta(gamma, theta):<br> virtual_sample_size = 1 / gamma - 1<br> alpha = theta * virtual_sample_size<br> beta = virtual_sample_size - alpha<br> return alpha, beta<br> ``` <br> ### `arm_addition` Data is simulated from a beta-binomial distribution with overdispersion parameter `gamma=0.01` for each of the two treatments. The rates start at `theta=0.10` and `theta=0.11` and increase by 0.005 each day for 40 days. The corresponding beta distribution parameters can be obtained with the same function as indicated in `drift_down_then_up`.
description: These datasets were used in a research paper titled "Effects of Model Misspecification on BayesianBandits: Case Studies in UX Optimization," published in the proceedings of the International Conference on Data Mining, 2020.
DOI: 10.5441/001/1.702j854s/1
title: Use of visual familiar cues in anosmic pigeons

description: Gagliardo A, Pollonara E, Wikelski M (2020) Pigeons remember visual landmarks after one release and rely upon them more if they are anosmic. Anim Behav. 166:85-94. doi:10.1016/j.anbehav.2020.05.009
description: Anosmic birds' homing ability is impaired when challenged to navigate over unfamiliar areas. Nevertheless, anosmic pigeons, Columba livia, show unimpaired navigation when released within a familiar area, suggesting that they may rely on familiar visual landmarks for navigation. However, direct evidence for the reliance on familiar visual landmarks during homing in anosmic birds has never been provided. In this study we tracked pigeons subjected singly to one training flight from each of three locations. Prior to their second release from each site, half of the birds were made anosmic while the others were not manipulated. The level of route fidelity was analysed separately for three phases of the homing process, in which familiar visual cues may have different relevance and may be used within different cognitive strategies: (1) ‘Initial decision making’; (2) ‘En route navigation’; (3) ‘Local navigation around home’. Compared to control birds, the anosmic birds flew significantly closer to previously overflown locations in the ‘En route navigation’ phase, while no difference in route fidelity emerged during phases (1) and (3). Our results showed that a single experience is sufficient for pigeons to learn release site features, and that familiar visual landmarks constitute a critical source of navigational information in olfactorily deprived birds during the homing process.
DOI: 10.5441/001/1.702j854s/2
title: Use of visual familiar cues in anosmic pigeons-reference-data

description: Gagliardo A, Pollonara E, Wikelski M (2020) Pigeons remember visual landmarks after one release and rely upon them more if they are anosmic. Anim Behav. 166:85-94. doi:10.1016/j.anbehav.2020.05.009
description: Anosmic birds' homing ability is impaired when challenged to navigate over unfamiliar areas. Nevertheless, anosmic pigeons, Columba livia, show unimpaired navigation when released within a familiar area, suggesting that they may rely on familiar visual landmarks for navigation. However, direct evidence for the reliance on familiar visual landmarks during homing in anosmic birds has never been provided. In this study we tracked pigeons subjected singly to one training flight from each of three locations. Prior to their second release from each site, half of the birds were made anosmic while the others were not manipulated. The level of route fidelity was analysed separately for three phases of the homing process, in which familiar visual cues may have different relevance and may be used within different cognitive strategies: (1) ‘Initial decision making’; (2) ‘En route navigation’; (3) ‘Local navigation around home’. Compared to control birds, the anosmic birds flew significantly closer to previously overflown locations in the ‘En route navigation’ phase, while no difference in route fidelity emerged during phases (1) and (3). Our results showed that a single experience is sufficient for pigeons to learn release site features, and that familiar visual landmarks constitute a critical source of navigational information in olfactorily deprived birds during the homing process.
DOI: 10.17632/yn3pknwcn2.1
title: Revised Library of Functions for "A Virtual Analog Computer for Your Desktop"

description: Revised Library of Functions is an update to the library originally published by Arthur Glazar [1]. The original starter library of functions was published simultaneoulsy Steve Taranovich [2]. The original library contains basic operators for use in LTspice electronic simulation software [3]. LTspice is a high performance SPICE simulator, schematic capture and waveform viewer with enhancements and models for easing the simulation of analog circuits [3]. The library of operators includes integration, differentiation, summation, inversion, multiplication, and division. The original version of these operators was for LTspiceIV, and these original files still work in LTspiceXVII. However, the original 3Summer file contained an error which needs to be fixed before the operator can be used. That file has been corrected here. That and the other files have also been updated and simplifed for easier use in the Windows 10 operating system. Analog computing is receiving increased attention in recent years because of extremely high processing speeds at very low energy cost [4]. In addition to being fun to use, analog computers are excellent teaching tools for solving differential equations. As explained by Arthur Glazar, analog computers became extinct in the 1970s for good reasons, but the reasons for the demise are eliminated in a virtual implementation [1]. In applications such as automatic process control, analog representations allow clear visualization of the flow of information through the control network. Analog signal processing is still common in other apllications such as instrumentation for chemical analysis. The files provided here allow the user to explore and learn the basics of analog computing in the LTspice environment.
DOI: 10.17632/6gtf9wxj3j.1
title: Effect of drilling induced defects on the mechanical properties of carbon fiber-reinforced thermoplastic polyamide

description: The files represent the result for the flexural and tensile tests. The initial state as well as two different drill hole qualities were examined. The quasi-static experiments of the undrilled / drilled specimens were carried out on an universal testing machine. The 5.9 mm diameter holes were made in the center of gravity. Ultimate tensile (UTS), open-hole tensile (OHT) and ultimate flexural (UFS), open-hole flexural (OHF) strengths and the load progression were determined for at least five individual test specimens. The test set-up for the 4-point flexural tests were adapted from ISO 14125. The corresponding set-up for the tensile tests was in accordance to ISO 527-4. Both test set-ups are describe in detail in the manuscript. A first key finding is that the drill hole quality has neither a critical influence onto the fiber dominated strength under tensile load nor onto the matrix dominated flexural strength. Both drill hole qualities led to about the same decrease of the particular strength value in comparison with the undrilled specimens. Therefore one can say, that the borehole itself is by far the most strength limiting factor, whereas the machining quality seems to be minor relevant for the strength behavior in drilled thermoplastic CFRP laminates under static loading. A second key finding is that the detected strength degradation induced by a 5.9 mm borehole was significantly higher under 4-point flexural loading (14%) compared to the 8 % under tensile loading. This shows, that tests under 4-point flexural load have a greater influence on the mechanical properties of drilled CFRTP than under tensile load.
DOI: 10.17632/3hg38s24sv.1
title: Raw data of particles accumulation in wind tunnel lab on the bogie of high-speed train in different cases

description: When high-speed train runs in environment with a large number of airborne particles which may accumulate on the bogie of the train, the normal operation of the bogie will be affected to reduce the riding comfort and train safety. The protective devices around the bogie were normally considered as an efficiency opinion to reduce the entry of particles into the bogie area. However, at present, there are relatively few analyses on the protective effects of diverse protective measures against different types of particles. In order to test the protective effects of shirt boards and spoilers, the airborne particle transport processes around the bogie were simulated in wind tunnel Lab. Three kinds of typical particles, including artificial snow particle, wheat bran, sieved soil, were employed to represent the different statuses of airborne particles in real conditions. Three parameters, including the relative reduction ratio (for artificial snow particles), the relative particle flux reduction ratio of fine wheat bran, and the relative concentration reduction ratio of fine sieve soil particles, were taken as the indexes to assess the protective effects.
DOI: 10.17632/989bhtp9bx.1
title: Lorentzian Filter Correction of Turbulence Measurements on Oscillating Floating Platforms: Impact on Wind Spectra and Eddy Covariance Fluxes

description: This data repository complements the Article "Lorentzian Filter Correction of Turbulence Measurements on Oscillating Floating Platforms: Impact on Wind Spectra and Eddy Covariance Fluxes" (MS# 2020WR027583R). Please use ReadMe file The Loretzian filter is a MATLAB code. Raw data was acquired from Eddy Covariance stations and processed through MATLAB using the Lorentzian filter or the code of Ikawa and Oechel et al. (2015) mentioned in the paper to achieve filtered data. Then, the data was processed through the EddyPro software (Licor) to achieve wind spectra, co-spectra and the different fluxes.
DOI: 10.17632/9sv5f2rchd.1
title: 2DH reef_lagoon_channel experiment data

description: This repository provides the experimental data required to reproduce the results presented in "Laboratory study on wave-induced setup and wave-driven current in a 2DH reef-lagoon-channel system" and "Laboratory study on wave transformation and run-up in a 2DH reef-lagoon-channel system".
DOI: 10.17632/5zk9x44c39.1
title: The Chyulu Hills volcanic field (Kenya): lineament traces and volcanic vents
DOI: 10.17632/mr5jdjnxdw.1
title: Effect of oxidation on quality of Chiba tofu produced by soy isolate protein when subjected to storage

description: Chiba tofu is a new type of vegetarian food, which prepared by soy protein isolate (SPI). According to factory feedback, the oxidative modification of SPI during the storage process, could affect quality of Chiba tofu. Consequently, the main objective of this study was to prepare Chiba tofu by SPI with different storage periods and evaluate the effect of different oxidation degree on structural characteristics of SPI and rheology, texture, microstructure and sensory of Chiba tofu rheology, texture, microstructure and sensory.
DOI: 10.17632/z2vffnyzb5.1
title: PGRMC1 in human decidualization

description: Suplementary Material
DOI: 10.17632/yrpmwhw5dg.1
title: Folliculitis decalvans microbiological signature and disease clinical stage

description: Supplemental files.
DOI: 10.5258/soton/d1504
title: Dataset for: Controllable duration and repetition-rate picosecond pulses from a high-average-power OP-GaAs OPO

description: This dataset supports the publication: Fu, Qiang et al (2020) Controllable duration and repetition-rate picosecond pulses from a high-average-power OP-GaAs OPO. Optics Express.
DOI: 10.6084/m9.figshare.12996806.v1
title: R0229_20181029a_videos

description: Rat 0229, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.17632/k2g2p5z9x6.2
title: SA Grid

description: Codes for SA lattice subtraction and Lys amine SASA calculation.
DOI: 10.17632/kh9jnbvv6f.1
title: Matlab codes - Micropolar modeling of tetra-chiral and tetra-achiral lattices

description: The MATLAB codes are about plotting directional properties – Young’s, shear, bulk moduli, and Poisson’s ratio of tetra-chiral and tetra-achiral lattices. The code on the tetra-chiral lattice also shows an axial-shear coupling effect.
DOI: 10.17632/8mf35ntz9z.2
title: Severe reactive astrocytes precipitate pathological hallmarks of Alzheimer’s disease via H2O2-production
DOI: 10.17632/gfdy6fm8f9.1
title: USCO2Emission

description: Consumption and CO2 Emissions of Nuclear Energy and Fossil Fuels
DOI: 10.17632/92rgnswtn8.1
title: Modeling the human aging transcriptome across tissues, health status, and sex
DOI: 10.17632/3ykf8xz8kc.2
title: First Simultaneous Lidar Observations of Thermosphere-Ionosphere Fe and Na (TIFe and TINa) Layers at McMurdo (77.84S, 166.67E), Antarctica with Concurrent Measurements of Aurora Activity, Enhanced Ionization Layers, and Converging Electric Field

description: This dataset supports the article "First Simultaneous Lidar Observations of Thermosphere-Ionosphere Fe and Na (TIFe and TINa) Layers at McMurdo (77.84S, 166.67E), Antarctica with Concurrent Measurements of Aurora Activity, Enhanced Ionization Layers, and Converging Electric Field" (submitted to Geophysical Research Letters on August 3, 2020 and revised on September 23, 2020). The data are provided in MatLb format. Plotting programs are also included.
DOI: 10.17632/7bnpfb623x.1
title: Possible Transient Luminous Events observed in Jupiter's upper atmosphere
DOI: 10.17632/sx47m336t8.1
title: Thermal Maturation effect on TOC

description: Data for Experimental study on the effect of thermal maturation on TOC
DOI: 10.17632/c2s237t3cv.1
title: Data on in vitro Antioxidant and Anticholine Esterase Activity of Ethanol Stem Bark Extract of Daniella oliveri (Holfe) Hutch and Dalz
DOI: 10.17632/jw3zwf8rdp.3
title: Sepehr_RumTel01

description: The expansion of social networks has accelerated the transmission of information and news at every communities. Over the past few years, the number of users, audiences and social networking publishers, are increased dramatically too. Among the massive amounts of information and news reported on these networks, we are faced with issues that have not been verified which is called “rumors”. Identifying rumors on social networks is carried out in the form of rumor detection approaches; the massive amount of these news and information force to use the machine learning techniques. The most important problem with auto-detection approaches is the lack of a database of rumors. For that matter, in this article, a collection of rumors published on the social network “telegrams” have been collected. These data are gathered from five Persian-language channels that have specially reviewed this issue. The collected data set contains 3283 messages with 2829 attachments, having a volume of over 1.6 gigabytes. This dataset can also be used for different purposes of natural language processing.
DOI: 10.17632/7vjm5bsyyt.1
title: Phosphorylation of PDHA by AMPK drives TCA cycle to promote cancer metastasis-Zhen Cai
DOI: 10.17632/3v8yndf2tn.1
title: Appendices for PhD Thesis titled The effect of ecosystem change, restoration, and plant diversity on thermally imaged surface temperature

description: Appendices for the PhD thesis titled "The effect of ecosystem change, restoration, and plant diversity on thermally imaged surface temperature"
DOI: 10.17632/bhvb3xmphc.3
title: Contrasting responses of β-diversity and functional composition of aquatic insect communities across local to regional scales in Neotropical streams

description: Supplementary Material from the original research article entitled: “Contrasting responses of β-diversity and functional composition of aquatic insect communities across local to regional scales in Neotropical streams”. Authors: Gilberto Nicacio, Erlane José Cunha, Neusa Hamada and Leandro Juen. This article is a preprint and has not been certified by peer review available on bioRxiv (DOI: 10.1101/2020.09.14.297077). ARTICLE INFORMATION: In this manuscript, we tested variation in community composition of Ephemeroptera, Trichoptera, and Plecoptera between regions with distinct ecological gradients known as Amazonian interfluves. We calculated beta diversity by computing Sorensen dissimilarities and evaluated environmental factors interact to structure taxonomical and functional composition in streams. Thus, we addressed discussion about effects of habitat structure and geographical distances considered as the main determinants for driving species diversity and distribution. Then, our results provide empirical support for patterns of beta diversity and functional composition of aquatic insect assemblages between regional contexts. In summary, species replacement generated most of community dissimilarities and were associated with geographical distances and environmental variation.
DOI: 10.5258/soton/d0945
title: Data for "The role of clay content on the response of railway track foundations during free-to-drain cyclic changes in principal stress rotation"

description: Data used in the paper "The role of clay content on the response of railway track foundations during free-to-drain cyclic changes in principal stress rotation", TRGEO_2019_64
DOI: 10.17632/sks63zhwby.1
title: Detailed Key Methods

description: Detailed key methods relating to manuscript: Olcina Monica, M., Kim Ryan, K., Balanis Nikolas, G., Li Caiyun, G., von Eyben, R., Graeber Thomas, G., Ricklin, D., Stucki, M., Giaccia Amato, J., Intracellular C4BPA levels regulate NF-κB dependent apoptosis, ISCIENCE (2020), doi: https://doi.org/10.1016/j.isci.2020.101594.
DOI: 10.17632/732n8426y5.1
title: Rheumatoid arthritis UPLC-MS lipidomics

description: RA patients who were about to commence treatment with methotrexate (MTX) were selected from the Rheumatoid Arthritis Medication Study. Using European League Against Rheumatism (EULAR) response criteria, 50 patients were categorized as good responders and 50 as non-responders at 6 months following the initiation of MTX treatment. Data on serum lipid levels were generated using UPLC-MS and supervised machine learning methods were used to predict a EULAR nonresponse.
DOI: 10.17632/8svrmx2cmv.1
title: Job Posts & Online Courses

description: Our study sheds light on the intersection between the analytics skills currently in demand by the job marketplace and the offer of MOOCs for developing such skills. Using a custom web scraper software on Python we have scraped from the web the description of more than 14.000 job posts and 3.600 Data Analytics online courses in order to systematically capture the demand of data skills and available development opportunities. We deleted the duplicate job offers and courses, we also deleted the job offers and courses which are not related to our study, then we have built a dataset containing 9.067 job offer and 764 online courses.
DOI: 10.35000/tedb-qd70
title: Occurrences of Rhamnus alnifolia

description: This custom download contains the occurrences of Rhamnus alnifolia. Due to some issue described here: https://github.com/gbif/portal-feedback/issues/2749, it is currently not possible to generate a download of the occurrences with the name Rhamnus alnifolia. Therefore we queried the verbatim names in our database. SQL query: “WHERE v_scientificname LIKE 'Rhamnus alnifolia%'”. Number of occurrences: 3316 Format: tab-delimited and the fields included in the download are the same as in a SIMPLE download from GBIF.
DOI: 10.21227/ds0w-vm07
title: Linear model

description: Linear model y = \sum_i (w_i * t_i) with t_i the full available candidates
DOI: 10.5258/soton/d1403
title: Dataset for: Hollow Core Optical Fibres with Comparable Attenuation 1 to Silica Fibres 2 between 600 and 1100 nm

description: Dataset supports: Sakr, H (2020). Hollow Core Optical Fibres with Comparable Attenuation 1 to Silica Fibres 2 between 600 and 1100 nm. Nature Communications.
DOI: 10.5258/soton/d1540
title: Dataset for: Modelling railway ballasted track settlement in vehicle-track interaction analysis

description: Data used in the preparation of figures presented in the paper: Grossoni, I.et al. (2020). Modelling railway ballasted track settlement in vehicle-track interaction analysis. Transportation Geotechnics, [100433].
DOI: 10.5258/soton/d1524
title: Dataset for: 'Compact picosecond mid-IR PPLN OPO with controllable peak powers'

description: This dataset supports the publication: Wu, Yudi et al (2020) Compact picosecond mid-IR PPLN OPO with controllable peak powers. OSA Continuum.
DOI: 10.15139/s3/wb168q
title: Data for: Live-cell super-resolved PAINT imaging of pN cellular traction forces

description: Source data for the main figures in Nature Methods "Live-cell super-resolved PAINT imaging of pN cellular traction forces" by Brockman and Su, et al. 2020 DOI: 10.1038/s41592-020-0929-2
DOI: 10.5281/zenodo.4048253
title: The BrukerAPI test data set (Bruker ParaVision v6.0.1)

description: This data set contains data from 45 experiments performed using the Bruker ParaVision v6.0.1 software. The purpose of this data set is to test the unified application programming interface to the Bruker data format - the <strong>BrukerAPI</strong>. See the software repository for more information. The data was measured using the following pulse sequences: FLASH.ppg FLASHAngio.ppg IgFLASH.ppg MGE.ppg MSME.ppg RARE.ppg FAIR_RARE.ppg RAREVTR.ppg RAREst.ppg MDEFT.ppg FISP.ppg FLOWMAP.ppg DtiStandard.ppg EPI.ppg FAIR_EPI.ppg CASL_EPI.ppg DtiEpi.ppg T1_EPI.ppg T2_EPI.ppg T2S_EPI.ppg SPIRAL.ppg DtiSpiral.ppg UTE.ppg UTE3D.ppg ZTE.ppg CSI.ppg FieldMap.ppg SINGLEPULSE.ppg NSPECT.ppg EPSI.ppg PRESS.ppg STEAM.ppg ISIS.ppg CPMG.ppg RfProfile.ppg The data was measured by the NMR group at the Institute of Scientific Instruments of the CAS, v. v. i. Change Log: Version 1.0.0 Initial release Version 1.1.0 Compressed NumPy arrays were added to each data set to enable data reading tests