cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/one-ouc17555574
title: Mattachine Society, Tay-Bush legal defense fund (1961-1962)
DOI: 10.25549/one-ouc17555579
title: Mattachine Society, Long Beach (Harbor) Area Council correspondence and memoranda (1953-1956)
DOI: 10.25549/one-ouc17560442
title: Mattachine Society of Washington, D.C., news releases (1965-1975)

description: Mattachine Society of Washington, D.C.; news releases, bulletins, and announcements documenting the activities of the Mattachine Society of Washington, including materials related to its Committee on Religious Concerns; a series of demonstrations and picketing organized at the White House, Independence Hall, and other government buildings, protesting employment discrimination among federal workers; and a case involving Benning Wentworth and his security clearance working for the U.S. Department of Defense (1965-1975)
DOI: 10.25549/one-ouc17555578
title: Mattachine Society, Long Beach (Harbor) area council meeting minutes (1954-1955)
DOI: 10.6084/m9.figshare.19166903.v1
title: Additional file 2 of A novel 4 immune-related genes as diagnostic markers and correlated with immune infiltrates in major depressive disorder

description: Additional file 2: Table S2. Differentially expressed IRGs between MDD and healthy controls in GSE98793 dataset.
DOI: 10.25549/one-ouc17555580
title: Mattachine Society, Tavern Guild (1964-1967)
DOI: 10.25549/one-ouc17555583
title: Mattachine Society, Long Beach (Harbor) area council constitution and bylaws (1953-1954)
DOI: 10.6084/m9.figshare.16545449.v2
title: Whole-transcriptome analysis of rat cavernosum and identification of circRNA-miRNA-mRNA networks to investigate nerve injury erectile dysfunction pathogenesis

description: There is growing evidence that circular RNAs (circRNAs) play a vital role in many kinds of diseases, including erectile dysfunction (ED). Nevertheless, the role of circRNAs in cavernous nerve-damaging ED (CNI-ED) is unknown. Here, we aimed to discover novel circRNAs, probed their potential role in the CNI-ED, and construct a ceRNA network of circRNAs. Twelve male Sprague Dawley rats were randomly divided into 2 groups by us: bilateral cavernous nerve crush (BCNC) and control groups. Four weeks after surgery, the spongy smooth muscle tissue of the rat penis was sequenced using high-throughput full transcriptome sequencing. We analyzed the expression of circRNAs, miRNAs, and mRNAs in the two groups. Twenty circRNAs with significantly different expressions were selected for RT-qPCR. CeRNA network of circRNAs was established using Cytoscape. GO and KEGG analysis was done by R package. Sequencing showed that 4,587 circRNAs, 762 miRNAs, and 21,661 mRNAs were dysregulated in the BCNC group. The top 20 differentially expressed circRNAs were further verified via RT-qPCR. The ceRNA network contained ten circRNAs, six miRNAs, and 227 mRNAs, including 23 circRNA-miRNA pairs and 227 miRNA-mRNA pairs. GO and KEGG analysis suggested that these ten circRNAs could main regulate energy metabolism processes. A protein‐protein interaction network was constructed with the mRNAs in ceRNA network, and five hub genes were identified. Our study revealed a potential link between circRNAs, miRNAs, and mRNAs in CNI-ED, suggesting that circRNAs may contribute to the occurrence of ED by regulating the cellular energy metabolism in CNI-ED.
DOI: 10.6084/m9.figshare.19166906.v1
title: Additional file 3 of A novel 4 immune-related genes as diagnostic markers and correlated with immune infiltrates in major depressive disorder

description: Additional file 3: Table S3. The proportion of 22 immune cells in GSE98793 dataset.
DOI: 10.25549/one-ouc17551284
title: Mattachine Society, correspondence, Donald Stewart Lucas (1956-1965)
DOI: 10.6084/m9.figshare.12875553
title: Additional file 1 of Horizontal gene transfer in silkworm, Bombyx mori

description: Additional file 1:Genomes used for HGT identification pipeline. (XLS 75 KB)
DOI: 10.25549/one-ouc17551283
title: Mattachine Society, Donald Stewart Lucas interview transcript (undated)
DOI: 10.6084/m9.figshare.12875556.v1
title: Additional file 2 of Horizontal gene transfer in silkworm, Bombyx mori

description: Additional file 2:The results about mapping coexpressed genes with each transferred gene onto pathways. (XLS 60 KB)
DOI: 10.6084/m9.figshare.14444907.v1
title: Additional file 1 of ESR1 as a recurrence-related gene in intrahepatic cholangiocarcinoma: a weighted gene coexpression network analysis

description: Additional file 1: Table-S1. The list of the 1019 DEGs in 29 iCCA samples from TCGA.
DOI: 10.25549/one-ouc17551286
title: Mattachine Society, correspondence, Donald Stewart Lucas (1956-1965)
DOI: 10.6084/m9.figshare.12875556
title: Additional file 2 of Horizontal gene transfer in silkworm, Bombyx mori

description: Additional file 2:The results about mapping coexpressed genes with each transferred gene onto pathways. (XLS 60 KB)
DOI: 10.25549/one-ouc17551289
title: Mattachine Society, correspondence, Wallace O. Maxey (1953-1961)
DOI: 10.6084/m9.figshare.19166954
title: Additional file 3 of Machine-learning based prediction of prognostic risk factors in patients with invasive candidiasis infection and bacterial bloodstream infection: a singled centered retrospective study

description: Additional file 3. Detailed data of drug sensitivity results.
DOI: 10.6084/m9.figshare.19166954.v1
title: Additional file 3 of Machine-learning based prediction of prognostic risk factors in patients with invasive candidiasis infection and bacterial bloodstream infection: a singled centered retrospective study

description: Additional file 3. Detailed data of drug sensitivity results.
DOI: 10.25549/one-ouc17551287
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.6084/m9.figshare.19166948
title: Additional file 1 of Machine-learning based prediction of prognostic risk factors in patients with invasive candidiasis infection and bacterial bloodstream infection: a singled centered retrospective study

description: Additional file 1. Detailed data of patients with invasive Candida infection complicated with bacterial bloodstream infection.
DOI: 10.6084/m9.figshare.19166948.v1
title: Additional file 1 of Machine-learning based prediction of prognostic risk factors in patients with invasive candidiasis infection and bacterial bloodstream infection: a singled centered retrospective study

description: Additional file 1. Detailed data of patients with invasive Candida infection complicated with bacterial bloodstream infection.
DOI: 10.25549/one-ouc17551291
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.25549/one-ouc17551293
title: Mattachine Society, correspondence, Donald Stewart Lucas (1956-1965)
DOI: 10.25549/one-ouc17551298
title: Mattachine Society, correspondence, Dale Olson (1954-1956)
DOI: 10.25549/one-ouc17551299
title: Mattachine Society, correspondence, Donald Stewart Lucas (1956-1965)
DOI: 10.25549/one-ouc17551300
title: Mattachine Society, correspondence, Donald Stewart Lucas (1956-1965)
DOI: 10.25549/one-ouc17551304
title: Mattachine Society, correspondence, Donald Stewart Lucas (1956-1965)
DOI: 10.25549/one-ouc17551301
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.25549/one-ouc17552503
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.6084/m9.figshare.14444866
title: Additional file 5 of Global analysis of HBV-mediated host proteome and ubiquitylome change in HepG2.2.15 human hepatoblastoma cell line

description: Additional file 5: Table S1. Total identified and quantified proteins in response to HBV integration in HepG2.2.15 cells.
DOI: 10.25549/one-ouc17551305
title: Mattachine Society, correspondence, Dale Olson (1954-1956)
DOI: 10.25549/one-ouc17551303
title: Mattachine Society, correspondence, Wallace O. Maxey (1953-1961)
DOI: 10.25549/one-ouc17552559
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.25549/one-ouc17551308
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.25549/one-ouc17552577
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.25549/one-ouc17552561
title: Mattachine Society, Emotional Security Program (1954-1955)
DOI: 10.25549/one-ouc17551302
title: Mattachine Society, Donald Stewart Lucas interview transcript (undated)
DOI: 10.17909/jgpd-kj32
title: Data from "Image deconvolution and PSF reconstruction with STARRED: a wavelet-based two-channel method optimized for light curve extraction"

description: JWST observation of SMACS J0723.3-7327
DOI: 10.25549/one-ouc17552566
title: Mattachine Society, Emotional Security Program (1954-1955)
DOI: 10.25549/one-ouc17551307
title: Mattachine Society, correspondence, Donald Stewart Lucas (1956-1965)
DOI: 10.25549/one-ouc17551359
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.25549/one-ouc17551306
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.25549/one-ouc17552560
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.25549/one-ouc17552570
title: Mattachine Society, First Church of One Brotherhood (1956-1957)
DOI: 10.25549/one-ouc17551368
title: Mattachine Society, Donald Stewart Lucas interview transcript (undated)
DOI: 10.25549/one-ouc17551366
title: Mattachine Society, correspondence, Donald Stewart Lucas (1956-1965)
DOI: 10.25549/one-ouc17551360
title: Mattachine Society, correspondence, Dale Olson (1954-1956)
DOI: 10.25549/one-ouc17551367
title: Mattachine Society, correspondence, Donald Stewart Lucas (1956-1965)
DOI: 10.25549/one-ouc17551364
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.6084/m9.figshare.12875580.v16
title: Additional file of Horizontal gene transfer in silkworm, Bombyx mori

description: Additional file of Horizontal gene transfer in silkworm, Bombyx mori
DOI: 10.6084/m9.figshare.16545449
title: Whole-transcriptome analysis of rat cavernosum and identification of circRNA-miRNA-mRNA networks to investigate nerve injury erectile dysfunction pathogenesis

description: There is growing evidence that circular RNAs (circRNAs) play a vital role in many kinds of diseases, including erectile dysfunction (ED). Nevertheless, the role of circRNAs in cavernous nerve-damaging ED (CNI-ED) is unknown. Here, we aimed to discover novel circRNAs, probed their potential role in the CNI-ED, and construct a ceRNA network of circRNAs. Twelve male Sprague Dawley rats were randomly divided into 2 groups by us: bilateral cavernous nerve crush (BCNC) and control groups. Four weeks after surgery, the spongy smooth muscle tissue of the rat penis was sequenced using high-throughput full transcriptome sequencing. We analyzed the expression of circRNAs, miRNAs, and mRNAs in the two groups. Twenty circRNAs with significantly different expressions were selected for RT-qPCR. CeRNA network of circRNAs was established using Cytoscape. GO and KEGG analysis was done by R package. Sequencing showed that 4,587 circRNAs, 762 miRNAs, and 21,661 mRNAs were dysregulated in the BCNC group. The top 20 differentially expressed circRNAs were further verified via RT-qPCR. The ceRNA network contained ten circRNAs, six miRNAs, and 227 mRNAs, including 23 circRNA-miRNA pairs and 227 miRNA-mRNA pairs. GO and KEGG analysis suggested that these ten circRNAs could main regulate energy metabolism processes. A protein‐protein interaction network was constructed with the mRNAs in ceRNA network, and five hub genes were identified. Our study revealed a potential link between circRNAs, miRNAs, and mRNAs in CNI-ED, suggesting that circRNAs may contribute to the occurrence of ED by regulating the cellular energy metabolism in CNI-ED.
DOI: 10.6084/m9.figshare.16545449.v3
title: Whole-transcriptome analysis of rat cavernosum and identification of circRNA-miRNA-mRNA networks to investigate nerve injury erectile dysfunction pathogenesis

description: There is growing evidence that circular RNAs (circRNAs) play a vital role in many kinds of diseases, including erectile dysfunction (ED). Nevertheless, the role of circRNAs in cavernous nerve-damaging ED (CNI-ED) is unknown. Here, we aimed to discover novel circRNAs, probed their potential role in the CNI-ED, and construct a ceRNA network of circRNAs. Twelve male Sprague Dawley rats were randomly divided into 2 groups by us: bilateral cavernous nerve crush (BCNC) and control groups. Four weeks after surgery, the spongy smooth muscle tissue of the rat penis was sequenced using high-throughput full transcriptome sequencing. We analyzed the expression of circRNAs, miRNAs, and mRNAs in the two groups. Twenty circRNAs with significantly different expressions were selected for RT-qPCR. CeRNA network of circRNAs was established using Cytoscape. GO and KEGG analysis was done by R package. Sequencing showed that 4,587 circRNAs, 762 miRNAs, and 21,661 mRNAs were dysregulated in the BCNC group. The top 20 differentially expressed circRNAs were further verified via RT-qPCR. The ceRNA network contained ten circRNAs, six miRNAs, and 227 mRNAs, including 23 circRNA-miRNA pairs and 227 miRNA-mRNA pairs. GO and KEGG analysis suggested that these ten circRNAs could main regulate energy metabolism processes. A protein‐protein interaction network was constructed with the mRNAs in ceRNA network, and five hub genes were identified. Our study revealed a potential link between circRNAs, miRNAs, and mRNAs in CNI-ED, suggesting that circRNAs may contribute to the occurrence of ED by regulating the cellular energy metabolism in CNI-ED.
DOI: 10.25549/one-ouc17551365
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.25549/one-ouc17552576
title: Mattachine Society, Emotional Security Program (1954-1955)
DOI: 10.25549/one-ouc17551373
title: Mattachine Society, correspondence, Donald Stewart Lucas (1956-1965)
DOI: 10.25549/one-ouc17551371
title: Mattachine Society, correspondence, Donald Stewart Lucas (1956-1965)
DOI: 10.25549/one-ouc17551372
title: Mattachine Society, correspondence, Dale Olson (1954-1956)
DOI: 10.6084/m9.figshare.19166951
title: Additional file 2 of Machine-learning based prediction of prognostic risk factors in patients with invasive candidiasis infection and bacterial bloodstream infection: a singled centered retrospective study

description: Additional file 2. Detailed data on bacterial species in patients with bacterial bloodstream infection.
DOI: 10.25549/one-ouc17551370
title: Mattachine Society, correspondence, Wallace O. Maxey (1953-1961)
DOI: 10.6084/m9.figshare.19166951.v1
title: Additional file 2 of Machine-learning based prediction of prognostic risk factors in patients with invasive candidiasis infection and bacterial bloodstream infection: a singled centered retrospective study

description: Additional file 2. Detailed data on bacterial species in patients with bacterial bloodstream infection.
DOI: 10.25549/one-ouc17551378
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.6084/m9.figshare.12875580.v5
title: Additional file of Horizontal gene transfer in silkworm, Bombyx mori

description: Additional file of Horizontal gene transfer in silkworm, Bombyx mori
DOI: 10.6084/m9.figshare.12875553.v1
title: Additional file 1 of Horizontal gene transfer in silkworm, Bombyx mori

description: Additional file 1:Genomes used for HGT identification pipeline. (XLS 75 KB)
DOI: 10.25549/one-ouc17551374
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.5281/zenodo.10004947
title: Model Counting Competition 2020: Full Instance Set

description: The dataset contains all instances that the organizers of the competition received or collected during the preparation phase of the Model Counting Competition 2020. The dataset includes short benchmark descriptions (00_description.{pdf,txt,md}) by the submitters/collectors (00_authors.txt).
For a more details, we refer to the reportFichte, Hecher, Hamiti: The Model Counting Competition 2020.
-----Changelog:
2023-10-17 (v2): We updated the instances to the most recent competition format in preparation for the report on the competitions 2021-2023. Note that the old instance set contained various instances with incorrect headers (less variables or clauses than in the actual data), unterminated lines, or a few broken lines. We corrected these instances by scripts that are available on github (daajoe:mc_format_tools).
DOI: 10.5281/zenodo.4292167
title: Model Counting Competition 2020: Full Instance Set

description: The dataset contains all instances that the organizers of the competition received or collected during the preparation phase of the Model Counting Competition 2020. The dataset includes short benchmark descriptions (00_description.{pdf,txt,md}) by the submitters/collectors (00_authors.txt).
For a more details, we refer to the reportFichte, Hecher, Hamiti: The Model Counting Competition 2020.
-----Changelog:
2023-10-17 (v2): We updated the instances to the most recent competition format in preparation for the report on the competitions 2021-2023. Note that the old instance set contained various instances with incorrect headers (less variables or clauses than in the actual data), unterminated lines, or a few broken lines. We corrected these instances by scripts that are available on github (daajoe:mc_format_tools).
DOI: 10.5281/zenodo.4292168
title: Model Counting Competition 2020: Full Instance Set

description: The dataset contains all instances that the organizers of the competition received or collected during the preparation phase of the Model Counting Competition 2020. The dataset includes short benchmark descriptions by the submitters. For a more details, we refer to the report<br> Fichte, Hecher, Hamiti: The Model Counting Competition 2020 on ArXiv.
DOI: 10.25549/one-ouc17551375
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.6084/m9.figshare.12875580.v15
title: Additional file of Horizontal gene transfer in silkworm, Bombyx mori

description: Additional file of Horizontal gene transfer in silkworm, Bombyx mori
DOI: 10.6084/m9.figshare.8157167
title: Additional file 10: of Detection of circular RNA expression and related quantitative trait loci in the human dorsolateral prefrontal cortex

description: In-house scripts for circRNA analysis. Scripts of RNA-seq, circQTL, and statistical analysis in this study. (ZIP 56 kb)
DOI: 10.6084/m9.figshare.12875580.v4
title: Additional file of Horizontal gene transfer in silkworm, Bombyx mori

description: Additional file of Horizontal gene transfer in silkworm, Bombyx mori
DOI: 10.6084/m9.figshare.14444919
title: Additional file 5 of ESR1 as a recurrence-related gene in intrahepatic cholangiocarcinoma: a weighted gene coexpression network analysis

description: Additional file 5: Table-S4. Validation of real hub genes.
DOI: 10.6084/m9.figshare.12872144
title: Additional file 1 of Identification of drought tolerant mechanisms in a drought-tolerant maize mutant based on physiological, biochemical and transcriptomic analyses

description: Additional file 1 : Table S1 FPKM value and annotation of all the genes detected from RNA sequencing.
DOI: 10.6084/m9.figshare.8157194
title: Additional file 3: of Detection of circular RNA expression and related quantitative trait loci in the human dorsolateral prefrontal cortex

description: Table S2. List of 10,559 circRNAs. (XLSX 1499 kb)
DOI: 10.25549/one-ouc17552588
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.6084/m9.figshare.8157203
title: Additional file 4: of Detection of circular RNA expression and related quantitative trait loci in the human dorsolateral prefrontal cortex

description: Table S3. Details of RT-PCR primers for validation of 13 selected circRNAs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.12872153.v1
title: Additional file 4 of Identification of drought tolerant mechanisms in a drought-tolerant maize mutant based on physiological, biochemical and transcriptomic analyses

description: Additional file 4 : Table S4 The DEGs specific to C7–2 and C7–2t.
DOI: 10.6084/m9.figshare.8157203.v1
title: Additional file 4: of Detection of circular RNA expression and related quantitative trait loci in the human dorsolateral prefrontal cortex

description: Table S3. Details of RT-PCR primers for validation of 13 selected circRNAs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8157212
title: Additional file 5: of Detection of circular RNA expression and related quantitative trait loci in the human dorsolateral prefrontal cortex

description: Table S4. Results of the gene-set enrichment analysis of host genes. (XLSX 18 kb)
DOI: 10.25549/one-ouc17551377
title: Mattachine Society, correspondence, Gonzalo (Tony) Segura, Jr. (1956-1961)
DOI: 10.6084/m9.figshare.8157173
title: Additional file 1: of Detection of circular RNA expression and related quantitative trait loci in the human dorsolateral prefrontal cortex

description: Table S1. List of Ribo-zero RNA-seq data from ENCODE Project Consortium used in this study. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8157227
title: Additional file 8: of Detection of circular RNA expression and related quantitative trait loci in the human dorsolateral prefrontal cortex

description: Table S7. The detail of circQTL SNPs located in the splicing site. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.12872102
title: Additional file of Protocol for the 3HP Options Trial: a hybrid type 3 implementation-effectiveness randomized trial of delivery strategies for short-course tuberculosis preventive therapy among people living with HIV in Uganda

description: Additional file of Protocol for the 3HP Options Trial: a hybrid type 3 implementation-effectiveness randomized trial of delivery strategies for short-course tuberculosis preventive therapy among people living with HIV in Uganda
DOI: 10.6084/m9.figshare.12872144.v1
title: Additional file 1 of Identification of drought tolerant mechanisms in a drought-tolerant maize mutant based on physiological, biochemical and transcriptomic analyses

description: Additional file 1 : Table S1 FPKM value and annotation of all the genes detected from RNA sequencing.
DOI: 10.6084/m9.figshare.8157218.v1
title: Additional file 6: of Detection of circular RNA expression and related quantitative trait loci in the human dorsolateral prefrontal cortex

description: Table S5. List of circRNAs associated with age of death at an FDRâ &lt;â 0.05. (XLSX 30 kb)
DOI: 10.25549/one-ouc17551376
title: Mattachine Society, correspondence, Dale Olson (1954-1956)
DOI: 10.6084/m9.figshare.14445103
title: Additional file 2 of Bioinformatic analysis identifying FGF1 gene as a new prognostic indicator in clear cell Renal Cell Carcinoma

description: Additional file 2: Table S4. Detailed patients information used for IHC and QPCR experiments.
DOI: 10.6084/m9.figshare.8157194.v1
title: Additional file 3: of Detection of circular RNA expression and related quantitative trait loci in the human dorsolateral prefrontal cortex

description: Table S2. List of 10,559 circRNAs. (XLSX 1499 kb)