cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2su42p
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The Hemiptera collection (EH) of the Muséum national d'Histoire naturelle (MNHN - Paris)",
 "Country is Croatia"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039807-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/usctheses-ouc11399kj37
title: White Gold: Lithium and the Future of the Salton Sea Community Organizationsâ€™ Fight for Equity in Imperial Valley
DOI: 10.15468/dl.u38bak
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Herbarium Senckenbergianum (FR) - Fungi",
 "Country is Croatia"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039812-250525065834625/datasets/export for details.
DOI: 10.15468/dl.vrecpy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphora ovalis (Kützing) Kützing, 1844",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((30.0251 -31.3959,30.5701 -30.7329,30.5701 -28.5786,25.5395 -28.5786,25.5395 -32.9007,28.2048 -32.9007,28.5753 -32.6569,29.4902 -31.7517,30.0251 -31.3959))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039811-250525065834625/datasets/export for details.
DOI: 10.15468/dl.8zagwu
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nomada opaca Alfken, 1913"
 ]
}

 The dataset includes 216 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039808-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gg9y7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is R-Algae - Herbário do Museu Nacional",
 "Country is Croatia"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039813-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kkeuy4
title: Occurrence Download

description: A dataset containing 628008 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eriocoma hymenoides (Roem. & Schult.) Rydb., Anax junius (Drury, 1773), Apis mellifera Linnaeus, 1758, Aquilegia coerulea James, Argia vivida Hagen, 1865, Ariolimax columbianus (A.Gould, 1851), Mahonia aquifolium (Pursh) Nutt., Boletus edulis Bull., Bouteloua gracilis (Kunth) Lag. ex Griffiths, Calochortus nuttallii Torr., Cantharellus californicus D.Arora & Dunham, Cantharellus formosus Corner, Carnegiea gigantea (Engelm.) Britton & Rose, Castilleja linariifolia Benth., Echinocereus triglochidiatus Engelm., Eschscholzia californica Cham., Lewisia rediviva Pursh, Libellula quadrimaculata Linnaeus, 1758, Myosotis alpestris F.W.Schmidt, Nassella pulchra (Hitchc.) Barkworth, Elymus smithii (Rydb.) Gould, Pepsis thisbe Lucas, 1895, Philadelphus lewisii Pursh, Pseudoroegneria spicata (Pursh) Á.Löve, Papilio multicaudata Kirby, 1884, Yucca glauca Nutt.)",
 "Country is one of (United States of America, Canada, Mexico)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 628008 records from 564 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039787-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dtjxkn
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Synodontis acanthomias)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 25 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001849-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k3afd7
title: Occurrence Download

description: A dataset containing 2633 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hemidactylus frenatus",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2633 records from 137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001850-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/wqa1-3r64
title: A Standard Metadata Template for Representing Mineral Spectral Reference Samples

description: This dataset contains a standard template for representing the metadata of mineral spectral reference specimens in the CSIRO Mineral Resources Discovery program. The template includes core properties of samples such as their name, identifier, type, and location, as well as associated metadata such as project, hazard declaration and physical storage. 
The template will be used to catalogue reference samples used for mineral spectral analysis (NVCL). It has been developed iteratively, revised, and improved based on feedback from researchers and lab technicians. This standardized template can prevent duplicate sample metadata entry and lower metadata redundancy, thereby improving the program's physical sample curation and discovery.
DOI: 10.15468/dl.d62aaz
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hemidactylus frenatus",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001851-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.58raab
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hemidactylus frenatus",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001852-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e44frz
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Avena byzantina",
 "Year 1999-2024"
 ]
}

 The dataset includes 111 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001853-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cm2yzs
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Solanum chmielewskii"
 ]
}

 The dataset includes 87 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001854-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30122839
title: New Hampshire wildlife-vehicle collision hotspots

description: Counts of mammal detections at wildlife-vehicle collision hotspots in New Hampshire, USA from 2023-2024 associated with the paper entitled "Close but not crossing: A novel camera trap study design to inform wildlife road ecology and vehicle collision mitigation"
DOI: 10.6084/m9.figshare.30122839.v1
title: New Hampshire wildlife-vehicle collision hotspots

description: Counts of mammal detections at wildlife-vehicle collision hotspots in New Hampshire, USA from 2023-2024 associated with the paper entitled "Close but not crossing: A novel camera trap study design to inform wildlife road ecology and vehicle collision mitigation"
DOI: 10.15468/dl.tr4rtg
title: Occurrence Download

description: A dataset containing 2853993577 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is one of (North America, South America, Europe, Oceania)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2853993577 records from 39764 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001728-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26345461
title: Interstate environmental peacebuilding A systematic review Coding Description.docx

description: Coding description
DOI: 10.6084/m9.figshare.26345461.v1
title: Interstate environmental peacebuilding A systematic review Coding Description.docx

description: Coding description
DOI: 10.6084/m9.figshare.26345338
title: ­­­­­­Genome assembly of the <i>Bos gaurus</i> in Vietnam using nanopore sequencing­­­Genome assembly of the <i>Bos gaurus</i> in Vietnam using nanopore sequencing

description: The gaur (<i>Bos gaurus</i>) is one of the largest wild cattle species in the Bovidae family and is among the most threatened mammals in Vietnam. Listed as vulnerable on the IUCN Red List since 1986, gaurs are found in various provinces across Vietnam, including Lai Chau, Son La, Thanh Hoa, Nghe An, and several others. Their population has drastically declined, with current estimates showing about 30-50 individuals in the Northwest and fewer than 300 in the Central Highlands. Conservation efforts are crucial, and genome assembly is vital, providing valuable information for effective conservation strategies.Using Oxford Nanopore sequencing technologies, this study generated over 49 Giga-bases of trimmed whole genome sequencing reads from the muscle tissue of a deceased gaur collected in 2014 in Quang Nam, Vietnam. These reads were assembled into a 2.61 Gb draft genome, comprising 32,004 contigs, 54 scaffolds, with an N50 of 324.5 kilobases and a GC content of 41.86%. The BUSCO completeness value, using the mammalia_odb10 dataset, was 83.4%. This Vietnamese gaur genome assembly will serve as a valuable resource for conservation genetic research in this species.
DOI: 10.15468/dl.z5f7rq
title: Occurrence Download

description: A dataset containing 6856 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phoenix dactylifera L."
 ]
}

 The dataset includes 6856 records from 259 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032080-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26345464
title: Selected articles coding.xlsx

description: Selected articles coding
DOI: 10.6084/m9.figshare.25624221
title: KMP assembly and gene annotation

description: The total DNA of a blood sample of a male Korean minipig (27 months old) was extracted, and DNA libraries for short, long, and Hi-C reads were constructed and sequenced. Contigs were generated by connecting PacBio subreads (79.78x) using Canu (v1.9), and the high-quality contigs supported by at least 50 subreads were selected for the subsequent procedure. The remaining contigs were polished using GenomicConsensus (v2.3.3). To build a chromosome-level genome assembly, the contigs were scaffolded using short reads, long reads, and multiple reference genomes (Bama, Göttingen, Meishan, Duroc, Landrace, Large white, cow, and goat) by RACA. Subsequently, Hi-C reads were aligned to the scaffolds using the Arima Hi-C mapping pipeline and SALSA2 was run for the Hi-C scaffolding. Lastly, the correction of misassemblies and the gap closing were done with short read data twice using Pilon (v1.22).For gene annotation, RNAs from 26 different tissues (appendix, backfat, bone marrow, brain, colon, forelimb muscle, groin, heart, hindlimb muscle, intestine, kidney, liver, lung, lymph node, nipple, pancreas, phren, pituitary gland, rib, sirloin, spinal cord, spleen, stomach, tenderloin, testis, and thymus) were extracted and sequenced on the Illumina platform. To annotate protein-coding genes, RNA-seq data were mapped to the chromosome-level scaffolds in the KMP assembly using HISAT2 (v2.2.1). Using the RNA-seq and gene annotation data of different species (pig, human, cow, and goat), we predicted the protein-coding genes in the KMP assembly by running GeMoMa (v1.9). For annotating non-coding genes, various types of non-coding RNAs, including rRNA, snRNA, and miRNA, were annotated using the Rfam database and Infernal (v1.1.3). Additionally, tRNA and rRNA were predicted with tRNAscan-SE (v2.0.5) and RNAmmer (v1.2), respectively. The final annotation was generated by merging all predictions using the Perl script (https://github.com/jkimlab/NCMD_study) provided by the previous study.<br>The sequencing read data for genome assembly and annotation can be obtained at NCBI SRA under the project of the PRJNA1104148.
DOI: 10.6084/m9.figshare.25624221.v2
title: KMP assembly and gene annotation

description: The total DNA of a blood sample of a male Korean minipig (27 months old) was extracted, and DNA libraries for short, long, and Hi-C reads were constructed and sequenced. Contigs were generated by connecting PacBio subreads (79.78x) using Canu (v1.9), and the high-quality contigs supported by at least 50 subreads were selected for the subsequent procedure. The remaining contigs were polished using GenomicConsensus (v2.3.3). To build a chromosome-level genome assembly, the contigs were scaffolded using short reads, long reads, and multiple reference genomes (Bama, Göttingen, Meishan, Duroc, Landrace, Large white, cow, and goat) by RACA. Subsequently, Hi-C reads were aligned to the scaffolds using the Arima Hi-C mapping pipeline and SALSA2 was run for the Hi-C scaffolding. Lastly, the correction of misassemblies and the gap closing were done with short read data twice using Pilon (v1.22).For gene annotation, RNAs from 26 different tissues (appendix, backfat, bone marrow, brain, colon, forelimb muscle, groin, heart, hindlimb muscle, intestine, kidney, liver, lung, lymph node, nipple, pancreas, phren, pituitary gland, rib, sirloin, spinal cord, spleen, stomach, tenderloin, testis, and thymus) were extracted and sequenced on the Illumina platform. To annotate protein-coding genes, RNA-seq data were mapped to the chromosome-level scaffolds in the KMP assembly using HISAT2 (v2.2.1). Using the RNA-seq and gene annotation data of different species (pig, human, cow, and goat), we predicted the protein-coding genes in the KMP assembly by running GeMoMa (v1.9). For annotating non-coding genes, various types of non-coding RNAs, including rRNA, snRNA, and miRNA, were annotated using the Rfam database and Infernal (v1.1.3). Additionally, tRNA and rRNA were predicted with tRNAscan-SE (v2.0.5) and RNAmmer (v1.2), respectively. The final annotation was generated by merging all predictions using the Perl script (https://github.com/jkimlab/NCMD_study) provided by the previous study.<br>The sequencing read data for genome assembly and annotation can be obtained at NCBI SRA under the project of the PRJNA1104148.
DOI: 10.15468/dl.z7yfeh
title: Occurrence Download

description: A dataset containing 2988 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platax teira (Forsskål, 1775)"
 ]
}

 The dataset includes 2988 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032081-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26345611
title: Supplementary Material for: Bilateral Endogenous Bacterial Endophthalmitis with Asynchrony for 14 months due to Klebsiella pneumoniae: A Case Report

description: Introduction: To describe a vary rare case of endogenous bacterial endophthalmitis caused by Klebsiella pneumoniae in both eyes with a difference in the onset of symptoms of 14 months in an immunocompetent patient.
Case Presentation: A 66-year-old immunocompetent man presented with asynchronous bilateral endogenous endophthalmitis produced by the Klebsiella pneumoniae bacterium at the starting point of a liver abscess after cholecystectomy surgery, causing endophthalmitis 1 year and 2 months apart between an eye and another. The first was diffuse anteroposterior endophthalmitis in the left eye that ended in visual loss and phthisis bulbi due to delayed initial diagnosis and established treatment, and the second was focal endophthalmitis in the right eye that preserved the organ and resulted in a vision of 20/20 due to early suspected diagnosis and rapid instituted treatment.
Conclusion: To our knowledge, this is the first published case of a long asynchronous bilateral endogenous bacterial endophthalmitis caused by Klebsiella pneumoniae with a prolonged difference of 14 months in the onset of symptoms between one eye and another. This case is a vision-threatening ophthalmologic emergency that can be associated with life-threatening systemic morbidities. The early diagnosis of infection represents a challenge for clinicians, ophthalmologists and microbiologists.
DOI: 10.6084/m9.figshare.26345611.v1
title: Supplementary Material for: Bilateral Endogenous Bacterial Endophthalmitis with Asynchrony for 14 months due to Klebsiella pneumoniae: A Case Report

description: Introduction: To describe a vary rare case of endogenous bacterial endophthalmitis caused by Klebsiella pneumoniae in both eyes with a difference in the onset of symptoms of 14 months in an immunocompetent patient.
Case Presentation: A 66-year-old immunocompetent man presented with asynchronous bilateral endogenous endophthalmitis produced by the Klebsiella pneumoniae bacterium at the starting point of a liver abscess after cholecystectomy surgery, causing endophthalmitis 1 year and 2 months apart between an eye and another. The first was diffuse anteroposterior endophthalmitis in the left eye that ended in visual loss and phthisis bulbi due to delayed initial diagnosis and established treatment, and the second was focal endophthalmitis in the right eye that preserved the organ and resulted in a vision of 20/20 due to early suspected diagnosis and rapid instituted treatment.
Conclusion: To our knowledge, this is the first published case of a long asynchronous bilateral endogenous bacterial endophthalmitis caused by Klebsiella pneumoniae with a prolonged difference of 14 months in the onset of symptoms between one eye and another. This case is a vision-threatening ophthalmologic emergency that can be associated with life-threatening systemic morbidities. The early diagnosis of infection represents a challenge for clinicians, ophthalmologists and microbiologists.
DOI: 10.15468/dl.8b4rtk
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rasbora myersi Brittan, 1954",
 "Year 2000-2024"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032082-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvum3f
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rasbora paviana Tirant, 1885",
 "Year 2000-2024"
 ]
}

 The dataset includes 19 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032083-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.basaq7
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rasbora rubrodorsalis Donoso-Büchner & Schmidt, 1997",
 "Year 2000-2024"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032084-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p9yh4c20
title: Shrew (Sorex sp.) Gut Contents Identified by DNA Metabarcoding, North America, 1968-2016

description: This data package contains four tables related to helminths and bacteria identified in the guts of North American shrews (Genus: Sorex). Tables include: two tables of specimen information about each shrew, such as species, museum collection identification, and NCBI accession IDs; one table of NBCI GenBank accession numbers of previously identified DNA sequences used in this study to design the helminth markers and serve as a reference library for the sequences obtained; and one table of taxonomic details of gut bacteria identified in this study.
DOI: 10.34816/ifao.archives.153252
title: TÔD_pv_2004_02929

description: Référence : pv_2004_02929<br />Site : Tôd<br />Secteur : Temple de Montou<br />Type : photographie<br />
DOI: 10.15468/dl.yhzwfz
title: Occurrence Download

description: A dataset listing the 9 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.2.23_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Reptilia"
 ]
}

 The dataset's 9 records were derived from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0369872-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-233088
title: United National Auxiliary Convention, COGIC, syllabus, 1990

description: [description english/roman)] United National Auxiliary Convention, Church of God in Christ (COGIC), syllabus, "UNAC in training, vo. VI", San Francisco, California, 1990 July 2-7.