cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4040811.v1
title: Bird distance-based dataset

description: This data set was taken in the grass-lot and wood-lot on the Northern Essex campus on Oct , 2016 at 9:30 am eastern pacific time. Distance-base method was used as the sampling technique for observing birds in these two environments. A transect was randomly selected in both environments each about equidistance from the beginning of a linear path located in each environment. Data was recorded a total of 5 times on each of the two environmentally differentiating transects and time spent sampling on each point on the transect was about 5 minutes each. The time spent observing was constant so that there was no bias variations in the number and type of birds observed. After each 5 minute interval, the birds were then identified based on their physical features and bird calls and recorded as well as the Beaufort number, distance on the transect, approximate distance from the individual along with the amount spotted and in which environment. This data taken enabled us to compare the number of birds versus the environmental conditions present when they were spotted.
DOI: 10.21942/uva.26248610.v1
title: Comet Survey Data

description: The Covid-19 crisis has had a severe impact on the already strained mental health of healthcareworkers. Trade unions, workers and hospitals are in need of better understanding what measures andinitiatives can be effective to mitigate these effects, in order to avoid that future pandemics put hospitalsand their workers under similar pressure, and to address the more structural mental health problems inthe sector. The project COMET (COvid-19 crisis, MEntal health of healthcare workers and Trade unionactions) aims for an ambitious, exhaustive examination of the responses by unions, workers andhospitals to the mental health impact of Covid-19 .<br>To that aim, the project conducted a survey among the health sector affiliates of the European PublicService Union (EPSU) to provide an overview of the various responses by unions, workers and hospitalsaimed to prevent, soften or treat mental health problems emerging during and after the Covid-19 crisis.This includes responses through collective bargaining, social dialogue and works councils or companyunions.<br>
DOI: 10.6084/m9.figshare.24501271.v2
title: Urban Slum Population Percentage and Urban Slum Population

description: Urban Slum Population Percentage and Urban Slum Population
DOI: 10.6084/m9.figshare.27732255.v1
title: Supplementary Material for: Severely Hyperammonemic Acute Liver Failure due to Paracetamol Overdose: The Impact of High-intensity Continuous Renal Replacement Therapy

description: Introduction: Paracetamol (acetaminophen) induced acute liver failure (ALF) with severe hyperammonemia (ammonia &gt;100 µmol.L-1) is a life-threatening condition. A strategy based on high intensity continuous renal replacement therapy (CRRT) without early (up to day seven) transplantation may enable clinicians to safely identify which patients can recover and survive and which patients require transplantation. 
Methods: We conducted a single-center, retrospective cohort study of patients with severely hyperammonemic paracetamol-induced ALF. The primary outcome was early transplant-free survival. 
Results: We studied 84 patients (median age: 38; female sex: 79 [85%]) over a 12-year period (median ammonia level at ICU admission: 153 µmol.L-1; median peak aspartate aminotransferase (AST): 10,029 U.L-1, median lactate: 5.0 mmol.L-1 and median INR: 4.4) and 55 (65%) with King’s College criteria for transplantation). Overall, 87% received high-intensity CRRT (92% in 2020-2023). Median CRRT intensity was 54 ml.kg-1.hr-1 within the first 48 hours and increased by 1.8 ml.kg-1.hr-1 per year during the study period (p = 0.002). Transplant-free survival to day 7 was 86% in 2011-2023 and 96% in 2020-2023. Overall, only 4 patients were transplanted and only 1 (4%) in 2020-223. On multivariable Cox analysis, factors independently associated with failure to achieve day seven transplant-free survival were higher APACHE III score (HR = 1.05, 95% CI [1.02-1.08]), higher lactate (HR = 1.27, 95% CI [1.12-1.44]) and lower platelet count at ICU admission (HR = 0.85, 95%CI [0.78-0.93]) and the median effluent dose applied within the first 48 hours of ICU admission (HR = 0.67, 95% CI [0.46-0.98]).
Conclusions: Early transplant-free survival is achievable in most patients with paracetamol-induced ALF and severe hyperammonaemia with a treatment based on high-intensity CRRT. Such transplant-free survival increased over time together with increased CRRT dose.
DOI: 10.17632/rmb9rkkj2d.1
title: Supplementary Tables for Vrcan et al., Genome-wide analyses to unravel genetic mechanisms governing udder morphology traits in dairy sheep

description: Supplementary Tables associated to research paper Vrcan et al., Genome-wide analyses to unravel genetic mechanisms governing udder morphology traits in dairy sheep.
DOI: 10.6084/m9.figshare.21970595.v1
title: Supplementary file 1

description: DESeq2 results for maternal gestation and delivery. Excel spreadsheet with four tabs, corresponding to the gestational ages at which maternal peripheral blood plasma was drawn (1st trimester, 2nd trimester, 3rd trimester, delivery).
DOI: 10.6084/m9.figshare.22331755.v1
title: mimic-2-preprocessed

description: Preprocessed version of the MIMIC-II dataset. See https://github.com/theislab/ehrapy-datasets/tree/main/mimic_2
DOI: 10.6084/m9.figshare.25672137.v1
title: Elsafty_RBCs_for_Segmentation_and_Detection_Slide_3

description: Each one of (Elsafty_RBCs_for_Segmentation_and_Detection_Slide_1-25) consists of three primary folders: "Cropped images,” "Masks,” and "Segmented images” corresponding to each slide/patient. The naming scheme for the cropped image, mask, and segmented image of every cell adheres to a consistent format, starting with the slide/patient number, followed by the unique patch/field number, and concluding with the (XYWH) coordination on the patch. All these images are conveniently stored in the lossless ".PNG" format.
DOI: 10.6084/m9.figshare.7916294.v1
title: gVCF_HG03714

description: 1000 Genomes gVCF mapped to hs37d5 for HG03714. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.27152778.v1
title: <b>Land use change-induced abrupt changes in vegetation and the role of climate </b><b>factors</b>

description: Climate and land use change (LUC) are major factors constraining the terrestrial ecosystem. As these impacts are expected to intensify in the future, it is necessary to quantify the effects of anthropogenic LUC on the terrestrial biosphere and its interaction with regional climate. Here, we identify abrupt decreases in Leaf Area Index (LAI), which is highly responsible for cropland expansion, based on Earth system large ensemble simulations. We further examine the role of climate change in the identified LAI reductions. In areas experiencing LUC, a negative relationship between LAI and surface temperature leads to positive feedback, which reinforces decreasing LAI and increasing warming. Moreover, regionally prolonged dry conditions and a shift towards drier climate conditions cause LAI to decrease further. These climate change impacts have a large spatial variation and cause western South America to show the most pronounced LAI response to LUC in the shared socioeconomic pathways (SSP) 3-7.0 scenario. These results highlight the combined effects of LUC and climate change, leading to future abrupt decreases in vegetation cover.
DOI: 10.6084/m9.figshare.28517363.v1
title: Supplementary Table 3. Genetic distances

description: Supplementary Table 3: Genetic Distances for the paper Integrative taxonomic revision of the rove beetle genus Platydracus of the Chinese fauna (Coleoptera, Staphylinidae, Staphylininae)
DOI: 10.6084/m9.figshare.23714373.v1
title: Data from: [ Drivers of human-tiger conflict risk and potential mitigation approaches]

description: Human-wildlife conflict has become a significant challenge for conservationists partic-ularly in areas where endangered species, such as large carnivores, are recovering. If we fail to balance the interests of humans and wildlife, human-wildlife conflict can have adverse outcomes. However, the drivers of human-wildlife conflict, and how to mitigate conflict, are often poorly understood. In this study, we aim to explore triggering reasons and potential mitigating approaches for human-tiger conflict risks through spatio-temporal niche parti-tioning. Based on data of reports of Amur tiger (Panthera tigris altaica) preying on cattle and camera-trap detection data from 2014 to 2019 in Hunchun, northeast China, we predict-ed Amur tiger occurrence and created risk maps of human-tiger potential encounters. We found that Amur tiger occurrence was positively driven by prey distribution and negatively by the distribution of pastures used for domestic cattle grazing (p &lt; 0.01). Predation on live-stock was heightened in areas with limited preferred prey, i.e., wild pig (Sus scrofa) and sika deer (Cervus nippon), and in closer proximity to cattle grazing land (p &lt; 0.01). Based on our models we divided areas utilized by human and tiger low, medium, and high-risk areas on the basis of tiger and human use across multiple spatio-temporal scales. Multiple spa-tio-temporal scale niche partitioning management might effectively reduce the risk of hu-man-tiger encounters, prompt harmonized coexistence between human being and tiger, and also provide new solutions for other areas experiencing human-wildlife conflicts.
DOI: 10.6084/m9.figshare.5467033.v2
title: Effect of iron supplementation -- biom table

description: The biom table was generated using Qiime 1.8.0 using uclust reference based OTU picking against greengene database (gg_13_8). <br>otu_table_filtered.biom was filtered from the biom table by the following script:<br><i>filter_otus_from_otu_table.py -i otu_table.biom -o otu_table_filtered.biom -n 10 -s 2</i><br><br>n= The minimum total observation count of an otu for that otu to be retained,s = The minimum number of samples an OTU must be observed in for that otu to be retained<br>
DOI: 10.6084/m9.figshare.7571105.v1
title: Sharing Electrical Impedance Tomography and neuroimaging data from stroke patients

description: 20 minute lightning talk presentation given by James Avery, from Imperial University, (formerly at University College London), at the Better Science through Better Data 2018 event. The video recording, slides and scribe are included.
DOI: 10.6084/m9.figshare.20179379.v1
title: Supplementary Material for: NELL1-positive HIV-associated lupus-like membranous nephropathy with spontaneous remission

description: Introduction: Kidney biopsy findings in patients with human immunodeficiency virus (HIV) are diverse, and optimal therapy for the various immune complex diseases in the setting of HIV is unknown. Case presentation: A man with well-controlled HIV developed nephrotic range proteinuria and kidney biopsy revealed lupus-like glomerulonephritis with a predominantly membranous pattern of injury. He opted for conservative therapy and experienced spontaneous and sustained remission. Subsequent testing revealed neural epidermal growth factor-like 1 (NELL1)-positive glomerular immune deposits. NELL1-positive glomerular immune deposits were identified in a total 2 of 5 tested HIV-associated MN, which were morphologically dissimilar and one of which weakly co-expressed phospholipase A2 receptor (PLA2R). Discussion: This case suggests potentially different outcomes in patients with immune complex diseases in the setting of HIV based on disease etiology and histopathology. HIV-associated MN is occasionally NELL1-positive.
DOI: 10.6084/m9.figshare.28706756.v1
title: tree.nwk

description: Phylogenetic tree for analysis presented in Naumann et al.
DOI: 10.6084/m9.figshare.28477316.v1
title: Project: Illiterate adolescents

description: Youth-Friendly Health Services (YFHS) centers in Rwanda were established to bridge the gap in information and services related to reproductive health. However, limited research has explored the challenges faced by illiterate adolescents in accessing sexual and reproductive health services. This study examined the accessibility and utilization of adolescent sexual and reproductive health (ASRH) services within YFHS among illiterate adolescents in Rwanda. A total of 150 illiterate adolescents were selected through convenience sampling. Additionally, a checklist was utilized to assess 16 YFHS centers.
DOI: 10.6084/m9.figshare.28702184.v1
title: SHOULDER ABD - UPPER LIMBS

description: Baby shoulder abduction
DOI: 10.6084/m9.figshare.14778381.v1
title: Different growth behaviors and metabolomic profiles in yogurts induced by multi-strain probiotics of Lactobacillus casei Zhang and Bifidobacterium lactis V9 under different fermentation temperatures

description: Growth behaviors and metabolomic profiles<br>
DOI: 10.6084/m9.figshare.14784507.v1
title: Supplementary Material for: Risk Factors Associated with Preterm Prelabor Rupture of Membranes after Cord Occlusion in Monochorionic Diamniotic Twins

description: <b><i>Introduction:</i></b> Preterm prelabor rupture of membranes (PPROM) is a common complication after fetal surgeries. The aim of this study was to assess risk factors for and outcomes after PPROM following cord occlusion (CO) in monochorionic diamniotic (MCDA) pregnancies. <b><i>Methods:</i></b> This was a retrospective cohort study of 188 consecutive MCDA pregnancies treated by bipolar or laser CO, either primarily because of discordant malformation (dMF) or severe selective fetal growth restriction (sFGR), or secondarily when complete bichorionization was not possible in case of twin-to-twin transfusion syndrome (TTTS) or sFGR. Intentional septostomy was performed when needed. The procedure-related PPROM was defined as rupture of membranes &lt;32 weeks’ gestation (PROM &lt;32 weeks). Selected pre-, intra-, and early postoperative variables were analyzed by univariate and binomial logistic regression to determine they are correlated to PROM &lt;32 weeks after CO. <b><i>Results:</i></b> Between 2006 and 2017, 188 cases underwent CO. Diagnosis was TTTS in 28.2% (<i>n</i> = 53), severe sFGR in 49.5% (<i>n</i> = 93), and dMF in 22.3% (<i>n</i> = 42). PROM &lt;32 weeks occurred in 21.3% (<i>n</i> = 40), resulting in worse perinatal outcomes, as preterm birth &lt;32 weeks occurred in 80.7% (vs. 8.3%, <i>p</i> = 0.000), procedure-to-delivery interval was 47.5 days (vs. 125, <i>p</i> = 0.000), gestational age (GA) at birth 30.0 weeks (vs. 37.7 weeks, <i>p</i> = 0.000), and survival 65.0% (vs. 91.1%, <i>p</i> = 0.000). In univariate analysis, indication, anterior placenta, cervical length, GA at surgery, operation time, amniodistention and drainage fluid volumes, chorioamniotic membrane separation, and septostomy were selected as relevant factors to be included in the regression model. In a multivariate analysis, TTTS was the only factor associated to PROM &lt;32 weeks (OR 3.5 CI 95% 1.5–7.9). <b><i>Conclusions:</i></b> PROM &lt;32 weeks after CO increases the risk of preterm delivery. In this cohort, the membrane rupture was more likely when CO was done in the context of TTTS.
DOI: 10.6084/m9.figshare.1549778.v1
title: Correlation in global routing dynamics

description: This folder contains the time series used in the analysis presented in the paper entitled ‘Long-Range Correlations and Memory in the Dynamics of Internet Interdomain Routing' http://arxiv.org/abs/1507.07299
DOI: 10.6084/m9.figshare.16884682.v1
title: Supplementary Material for: Beneficial effects of cardiomyopathy-associated genetic variants on physical performance: a hypothesis-generating scoping review

description: Background Genetic variants associated with cardiomyopathies (CMPs) are prevalent in the general population. In young athletes, CMPs account for roughly a quarter of sudden cardiac death, with further unexplained clustering in specific sports. Consequently, most CMPs form a contra-indication for competitive sports. We hypothesized that genetic variants might (paradoxically) improve physical performance early in life while impairing cardiac function later in life. Methods Systematic PubMed search to investigate whether genetic variants in genes associated with CMPs could be related to beneficial performance phenotypes. Summary In a limited number of studies (n=6), 2860 individuals/ subjects with genetic variants were able to outperform those without said variants, as measured by running speed (~38 m/min in heterozygous (HET) mice, n=6 vs ~32 m/min in wild type (WT) mice, n=7, P=0.004) and distance (966±169 km HET mice vs 561±144 km WT mice, P=0.0035, n=10), elite athlete status in endurance athletes (n=1672, P=1.43*10-8), maximal oxygen uptake in elite athletes (absolute difference not provided, n=32, P=0.005), maximal oxygen uptake in unrelated individuals (n=473, P=0.0025), personal records in highly trained marathon runners (2:26:28±0:06:23 min HET, n=32 vs. 2:28:53±0:05:50 min without polymorphism, n=108, P=0.020), and peripheral muscle force contraction in patients following a cardiac rehabilitation programme (absolute values not provided, n=260). Key message Beneficial effects in genetic variants associated with CMPs could hypothetically play a role in the selection of young athletes, consequently explaining the prevalence of such genetic variants in athletes and the general population.
DOI: 10.6084/m9.figshare.3558873.v1
title: Appendix D. Detailed list of reptile and amphibian captures and observations organized by general habitat type.

description: Detailed list of reptile and amphibian captures and observations organized by general habitat type.
DOI: 10.6084/m9.figshare.24969042.v1
title: Clothing colour preferences as a function of facial complexion

description: One csv file contain colour measures of 24 facial stimuli (iris, hair, and skin colour in CIE L<i>a*</i>b* colour space).The other csv file contains the proportion of warm colours chosen by 87 participants in a 2 alternative forced choice between a warm vs cool colour pair at a high colour saturation and mid-level colour value (lightness), or a high colour value and mid level colour saturation. Facial stimuli vary in eye lightness and in skin lightness.
DOI: 10.17632/zg9jkv4y9r
title: Adoption and actual use of GeoGebra in teaching Limits and Continuity of functions: The mediating effect of the educational background, Experiences, Professional development, Teaching Philosophy, Teacher’s confidences and Age’s.

description: This data helps to identify the interrelationship among teacher's educational background, Experiences, Professional development, Teaching Philosophy, Teacher’s confidences and Age’s on adoption and actual use of GeoGebra
DOI: 10.17632/zg9jkv4y9r.1
title: Adoption and actual use of GeoGebra in teaching Limits and Continuity of functions: The mediating effect of the educational background, Experiences, Professional development, Teaching Philosophy, Teacher’s confidences and Age’s.

description: This data helps to identify the interrelationship among teacher's educational background, Experiences, Professional development, Teaching Philosophy, Teacher’s confidences and Age’s on adoption and actual use of GeoGebra
DOI: 10.6084/m9.figshare.26557301.v1
title: Additional file 1 of Anti-C5a antibody vilobelimab treatment and the effect on biomarkers of inflammation and coagulation in patients with severe COVID-19: a substudy of the phase 2 PANAMO trial

description: Additional file 1. Amsterdam UMC COVID-19 Biobank Investigators.
DOI: 10.6084/m9.figshare.5900308.v1
title: brownbanded bamboo shark gene model predicted on Cpunctatum_v1.0

description: GFF file for brownbanded bamboo shark gene model predicted on Cpunctatum_v1.0
DOI: 10.6084/m9.figshare.12950528.v1
title: Observation data at Shennongjia - Criteria air pollutants, VOCs, OVOCs, and meteorological parameters

description: This dataset contains the observation data of criteria air pollutants, VOCs, OVOCs and meteorology at a national background site in Central China.
DOI: 10.6084/m9.figshare.21539625.v1
title: longitudinal_data.csv

description: Longitudinal data corresponding to analysis code that explores the relationship between offline and online autonomy and competence among adolescents during the Covid-19 pandemic in Perú.
DOI: 10.6084/m9.figshare.28053656.v1
title: Spiritual Fitness Scale: Associations with Positive Mental Well-being and Depression in Poland

description: Spiritual Fitness may be defined as a set of beliefs, principles, or values that sustain an individual's well-being and purpose. It is a vital domain of the human performance optimization paradigm. The SOCOM Spiritual Fitness Scale is a psychometric questionnaire that measures three types of commitment: commitment to the pursuit of meaning, purpose, and values; service and sacrifice for the greater good; and personal connection with a higher power.
DOI: 10.6084/m9.figshare.24549865.v2
title: Fastq files used in: Oomycetes communities are influenced by land use and disease status in Christmas tree production in Southern Québec, Canada.

description: Forests are threatened by many natural stressors intensified by climate change and anthropogenic activities, which tend to increase their susceptibility to pests and pathogens. Consequently, oomycetes-related forest decline or dieback cases are increasing in natural, urban, and agricultural landscapes. Christmas tree growers from Southern Québec, Canada, are experiencing root rot problems, with reported incidences up to 25%. In a previous study, seven Phytophthora spp. were associated with this root rot problem, but the overall diversity of oomycetes has not yet been investigated. Hence, in this study, we use a metabarcoding approach to provide an overview of the diversity, richness, and composition of the oomycetes community in fir plantations compared to surrounding natural forests.Details about data structure and analyses are available at: https://github.com/hvanderheyden/cimdec_phytophthora.
DOI: 10.6084/m9.figshare.5126068.v1
title: Supplementary Material for: Proteomic Analysis of Whole Glomeruli in Patients with IgA Nephropathy Using Microsieving

description: <b><i>Background:</i></b> To promote understanding of immunoglobulin A nephropathy (IgAN) pathophysiology, we tried to elucidate glomerular protein profiles in IgAN, using microsieving that we established recently to isolate glomeruli from renal biopsy samples and proteomic approaches. <b><i>Methods:</i></b> Glomeruli were isolated from renal biopsy samples of patients with IgAN (n = 5) and with minimal change nephrotic syndrome (MCNS; n = 5) using microsieving. Proteins extracted from the isolated glomeruli were separated by 2-dimensional differential gel electrophoresis (2D-DIGE). Proteins with different amounts between the two groups were identified by mass spectrometry. One of the identified proteins, α-actinin-4 (ACTN4), was further analyzed by Western blotting, RT-polymerase chain reaction (PCR), and immunohistochemistry. <b><i>Results:</i></b> By 2D-DIGE, 72 out of the detected 1,170 protein spots showed significantly different intensity between the two groups (p &lt; 0.05). Thirty-four out of the 72 protein spots showed more than 1.5-fold or less than 1/1.5-fold intensity, out of which 16 protein spots were successfully identified. No microbial protein was identified. ACTN4 molecules with a low molecular weight of approximately 77 kDa were found to increase in the IgAN group. Lack of an N-terminal part of ACTN4 was demonstrated by Western blotting. No defect of mRNA for ACTN4 was evidenced by RT-PCR. Predominant existence of ACTN4 in capillary walls of glomeruli of IgAN patients was demonstrated by immunohistochemistry in glomerular sections of patients with IgAN. <b><i>Conclusion:</i></b> Use of microsieving enabled us to biochemically analyze glomerular proteins in renal biopsy samples from patients with glomerular diseases. With this method, we demonstrated skewed glomerular protein profiles in IgAN.