cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3723040_d2.v1
title: MOESM2 of Paleomagnetic direction and paleointensity variations during the Matuyama–Brunhes polarity transition from a marine succession in the Chiba composite section of the Boso Peninsula, central Japan

description: Additional file 2. Oxygen isotope data of benthic species from the Yoro-River and Yoro-Tabuchi sections. The δ18O values of the Cibicides spp. were converted into those of B. quadrilatera by adding 0.64‰.
DOI: 10.6084/m9.figshare.c.3723040_d2
title: MOESM2 of Paleomagnetic direction and paleointensity variations during the Matuyama–Brunhes polarity transition from a marine succession in the Chiba composite section of the Boso Peninsula, central Japan

description: Additional file 2. Oxygen isotope data of benthic species from the Yoro-River and Yoro-Tabuchi sections. The δ18O values of the Cibicides spp. were converted into those of B. quadrilatera by adding 0.64‰.
DOI: 10.6084/m9.figshare.c.3723112_d2
title: Additional file 11: of An integrative systematic framework helps to reconstruct skeletal evolution of glass sponges (Porifera, Hexactinellida)

description: Partition information (gene boundaries) for molecular supermatrix (RAxML format). (TXT 80 bytes)
DOI: 10.6084/m9.figshare.c.3723112_d3.v1
title: Additional file 12: of An integrative systematic framework helps to reconstruct skeletal evolution of glass sponges (Porifera, Hexactinellida)

description: Combined morphological character matrix of Amphidiscophora and Hexasterophora. (NEX 27.8 KB)
DOI: 10.6084/m9.figshare.c.3723103_d5.v1
title: Additional file 14: Table S8. of Transcriptome analysis of pancreatic cells across distant species highlights novel important regulator genes

description: Conserved beta cell markers. The ZMH excel page shows the genes with beta cell-enriched expression in zebrafish, mice and human. The ZM, ZH, and HM excel pages show genes with beta cell-enriched expression in two species (ZM: zebrafish and mice; ZH: zebrafish and human; HM: human and mice). Beta cell versus alpha cell expression ratio is given as fold change (FC) for each species. The ZMH, ZH, and HM genes also detected as enriched in specific pancreatic cell types in the human single-cell transcriptomic studies [19â  21] are also noted in the columns on the right part. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3723112_d3
title: Additional file 12: of An integrative systematic framework helps to reconstruct skeletal evolution of glass sponges (Porifera, Hexactinellida)

description: Combined morphological character matrix of Amphidiscophora and Hexasterophora. (NEX 27.8 KB)
DOI: 10.6084/m9.figshare.c.3723103_d5
title: Additional file 14: Table S8. of Transcriptome analysis of pancreatic cells across distant species highlights novel important regulator genes

description: Conserved beta cell markers. The ZMH excel page shows the genes with beta cell-enriched expression in zebrafish, mice and human. The ZM, ZH, and HM excel pages show genes with beta cell-enriched expression in two species (ZM: zebrafish and mice; ZH: zebrafish and human; HM: human and mice). Beta cell versus alpha cell expression ratio is given as fold change (FC) for each species. The ZMH, ZH, and HM genes also detected as enriched in specific pancreatic cell types in the human single-cell transcriptomic studies [19â  21] are also noted in the columns on the right part. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3723112_d4.v1
title: Additional file 13: of An integrative systematic framework helps to reconstruct skeletal evolution of glass sponges (Porifera, Hexactinellida)

description: Combined morphological character matrix of Amphidiscophora and Hexasterophora with additional characters not used for phylogenetic inference, including merged total-evidence MP tree of Amphidiscophora and Hexasterophora. (NEX 33.2 KB)
DOI: 10.6084/m9.figshare.c.3723112_d4
title: Additional file 13: of An integrative systematic framework helps to reconstruct skeletal evolution of glass sponges (Porifera, Hexactinellida)

description: Combined morphological character matrix of Amphidiscophora and Hexasterophora with additional characters not used for phylogenetic inference, including merged total-evidence MP tree of Amphidiscophora and Hexasterophora. (NEX 33.2 KB)
DOI: 10.6084/m9.figshare.c.3723103_d6.v1
title: Additional file 15: Table S9. of Transcriptome analysis of pancreatic cells across distant species highlights novel important regulator genes

description: Conserved alpha cell markers. The ZMH excel page shows the genes with alpha cell enriched expression in Zebrafish, Mice and Human. The ZM, ZH and HM excel pages show genes with alpha cell-enriched expression in two species (ZM: Zebrafish and Mice; ZH: Zebrafish and Human; HM: Human and Mice). Alpha cell versus beta cell expression ratio is given as fold change (FC) for the three species. The ZMH, ZH and HM genes also detected as enriched in specific pancreatic cell types in the human single cell transcriptomic studies [19â  21] are also noted in the columns on the right part. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3723103_d6
title: Additional file 15: Table S9. of Transcriptome analysis of pancreatic cells across distant species highlights novel important regulator genes

description: Conserved alpha cell markers. The ZMH excel page shows the genes with alpha cell enriched expression in Zebrafish, Mice and Human. The ZM, ZH and HM excel pages show genes with alpha cell-enriched expression in two species (ZM: Zebrafish and Mice; ZH: Zebrafish and Human; HM: Human and Mice). Alpha cell versus beta cell expression ratio is given as fold change (FC) for the three species. The ZMH, ZH and HM genes also detected as enriched in specific pancreatic cell types in the human single cell transcriptomic studies [19â  21] are also noted in the columns on the right part. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3723124_d1.v1
title: Additional file 1: of Out of hours care in Germany - High utilization by adult patients with minor ailments?

description: Data (British Language). (XLSX 381 kb)
DOI: 10.15468/dl.zvzckz
title: Occurrence Download

description: A dataset containing 6877 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Aix galericulata (Linnaeus, 1758)",
 "Year 2000-2024"
 ]
}

 The dataset includes 6877 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038653-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3723112_d30
title: Additional file 7: of An integrative systematic framework helps to reconstruct skeletal evolution of glass sponges (Porifera, Hexactinellida)

description: Complete 28S rDNA alignment (incl. secondary structure) in Nexus format. (NEX 116 KB)
DOI: 10.6084/m9.figshare.c.3723112_d31.v1
title: Additional file 8: of An integrative systematic framework helps to reconstruct skeletal evolution of glass sponges (Porifera, Hexactinellida)

description: Complete 18S rDNA alignment (incl. secondary structure) in Nexus format. (NEX 116 KB)
DOI: 10.6084/m9.figshare.c.3723112_d29
title: Additional file 6: of An integrative systematic framework helps to reconstruct skeletal evolution of glass sponges (Porifera, Hexactinellida)

description: Complete COI alignment in Nexus format. (NEX 80.8 KB)
DOI: 10.6084/m9.figshare.c.3723112_d31
title: Additional file 8: of An integrative systematic framework helps to reconstruct skeletal evolution of glass sponges (Porifera, Hexactinellida)

description: Complete 18S rDNA alignment (incl. secondary structure) in Nexus format. (NEX 116 KB)
DOI: 10.6084/m9.figshare.c.3723112_d32
title: Additional file 9: of An integrative systematic framework helps to reconstruct skeletal evolution of glass sponges (Porifera, Hexactinellida)

description: Cleaned concatenated alignment (molecular supermatrix) in Nexus format. (NEX 354 KB)
DOI: 10.6084/m9.figshare.c.3723112_d32.v1
title: Additional file 9: of An integrative systematic framework helps to reconstruct skeletal evolution of glass sponges (Porifera, Hexactinellida)

description: Cleaned concatenated alignment (molecular supermatrix) in Nexus format. (NEX 354 KB)
DOI: 10.6084/m9.figshare.c.3723745_d1.v1
title: Additional file 1: of Prevalence and predictors of intra-abdominal hypertension and compartment syndrome in surgical patients in critical care units at Kenyatta National Hospital

description: Raw data set. Description: Demographic details, laboratory tests, clinical information and IAP measurements. (XLSX 38Â kb)
DOI: 10.6084/m9.figshare.c.3723745_d1
title: Additional file 1: of Prevalence and predictors of intra-abdominal hypertension and compartment syndrome in surgical patients in critical care units at Kenyatta National Hospital

description: Raw data set. Description: Demographic details, laboratory tests, clinical information and IAP measurements. (XLSX 38Â kb)
DOI: 10.6084/m9.figshare.c.3723760_d1.v1
title: Additional file 1: of Tumor burden monitoring using cell-free tumor DNA could be limited by tumor heterogeneity in advanced breast cancer and should be evaluated together with radiographic imaging

description: Clinical and pathological variables. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3723760_d1
title: Additional file 1: of Tumor burden monitoring using cell-free tumor DNA could be limited by tumor heterogeneity in advanced breast cancer and should be evaluated together with radiographic imaging

description: Clinical and pathological variables. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3723769_d1.v1
title: Additional file 1: of Biomechanical cadaveric comparison of patellar ligament suture protected by a steel cable versus a synthetic cable

description: Groups of patients. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3723769_d1
title: Additional file 1: of Biomechanical cadaveric comparison of patellar ligament suture protected by a steel cable versus a synthetic cable

description: Groups of patients. (XLSX 13Â kb)
DOI: 10.15468/dl.629kgb
title: Occurrence Download

description: A dataset containing 434 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lantana camara L."
 ]
}

 The dataset includes 434 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038655-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3723808_d1.v1
title: Additional file 1: of Prevalence study and risk factor analysis of selected bacterial, protozoal and viral, including vector-borne, pathogens in cats from Cyprus

description: Sequences of the four amplicons from the positive confirmatory Leishmania spp. qPCR. (TXT 971 bytes)
DOI: 10.6084/m9.figshare.c.3723808_d1
title: Additional file 1: of Prevalence study and risk factor analysis of selected bacterial, protozoal and viral, including vector-borne, pathogens in cats from Cyprus

description: Sequences of the four amplicons from the positive confirmatory Leishmania spp. qPCR. (TXT 971 bytes)
DOI: 10.6084/m9.figshare.c.3723766_d12.v1
title: Additional file 20: of A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis

description: Table of consensus cluster 5 full output of edge-pathway (Jaccard) similarity Mannâ  Whitney U tests. (TXT 68 kb)
DOI: 10.6084/m9.figshare.c.3723766_d12
title: Additional file 20: of A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis

description: Table of consensus cluster 5 full output of edge-pathway (Jaccard) similarity Mannâ  Whitney U tests. (TXT 68 kb)
DOI: 10.6084/m9.figshare.c.3723766_d13.v1
title: Additional file 21: of A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis

description: Table of consensus cluster 6 full output of edge-pathway (Jaccard) similarity Mannâ  Whitney U tests. (TXT 57 kb)
DOI: 10.6084/m9.figshare.c.3723766_d13
title: Additional file 21: of A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis

description: Table of consensus cluster 6 full output of edge-pathway (Jaccard) similarity Mannâ  Whitney U tests. (TXT 57 kb)
DOI: 10.6084/m9.figshare.c.3723841_d2.v1
title: Additional file 2: Table S2. of A repertoire of protease inhibitor families in Amblyomma americanum and other tick species: inter-species comparative analyses

description: Results of Amblyomma americanum BLASTX search against tick sequences in the GenBank database. (XLSX 83 kb)
DOI: 10.6084/m9.figshare.c.3723829_d6.v1
title: Additional file 4: of Genome-wide expression profiling in leaves and roots of date palm (Phoenix dactylifera L.) exposed to salinity

description: Table S1. DEGs and their predicted function in leaves. Only significantly (p, FDRâ
DOI: 10.6084/m9.figshare.c.3723841_d2
title: Additional file 2: Table S2. of A repertoire of protease inhibitor families in Amblyomma americanum and other tick species: inter-species comparative analyses

description: Results of Amblyomma americanum BLASTX search against tick sequences in the GenBank database. (XLSX 83 kb)
DOI: 10.6084/m9.figshare.c.3723766_d22
title: Additional file 2: of A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis

description: Table of Bostwick dataset pathophenotype associations with WGCNA co-expression modules. (TXT 3 kb)
DOI: 10.6084/m9.figshare.c.3723841_d3.v1
title: Additional file 3: of A repertoire of protease inhibitor families in Amblyomma americanum and other tick species: inter-species comparative analyses

description: FASTA sequences for Amblyomma americanum contigs from Illumina sequencing, by PI family. (ZIP 638 kb)
DOI: 10.6084/m9.figshare.c.3723829_d6
title: Additional file 4: of Genome-wide expression profiling in leaves and roots of date palm (Phoenix dactylifera L.) exposed to salinity

description: Table S1. DEGs and their predicted function in leaves. Only significantly (p, FDRâ
DOI: 10.6084/m9.figshare.c.3723841_d3
title: Additional file 3: of A repertoire of protease inhibitor families in Amblyomma americanum and other tick species: inter-species comparative analyses

description: FASTA sequences for Amblyomma americanum contigs from Illumina sequencing, by PI family. (ZIP 638 kb)
DOI: 10.6084/m9.figshare.c.3723766_d24.v1
title: Additional file 31: of A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis

description: Table mapping Xue et al. module numbers to our module names (Fig.Â 5b). (TSV 125 bytes)
DOI: 10.6084/m9.figshare.c.3723829_d7.v1
title: Additional file 5: of Genome-wide expression profiling in leaves and roots of date palm (Phoenix dactylifera L.) exposed to salinity

description: Table S2. Mapping of the DEGs in isolated from leaf tissues on the metabolic pathways using the KEGG database. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3723766_d25.v1
title: Additional file 32: of A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis

description: Table of p values of all Xue et al. modules tested. (TSV 526 bytes)
DOI: 10.6084/m9.figshare.c.3723832_d5
title: Additional file 5: of Discovery and evolution of novel hemerythrin genes in annelid worms

description: The nucleotide alignment used for analyses. (TXT 89 kb)
DOI: 10.6084/m9.figshare.c.3723766_d24
title: Additional file 31: of A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis

description: Table mapping Xue et al. module numbers to our module names (Fig.Â 5b). (TSV 125 bytes)
DOI: 10.6084/m9.figshare.c.3723766_d25
title: Additional file 32: of A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis

description: Table of p values of all Xue et al. modules tested. (TSV 526 bytes)
DOI: 10.6084/m9.figshare.c.3723829_d7
title: Additional file 5: of Genome-wide expression profiling in leaves and roots of date palm (Phoenix dactylifera L.) exposed to salinity

description: Table S2. Mapping of the DEGs in isolated from leaf tissues on the metabolic pathways using the KEGG database. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3723766_d26.v1
title: Additional file 3: of A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis

description: Table of Christmann dataset pathophenotype associations with WGCNA co-expression modules. (TXT 2 kb)
DOI: 10.15454/ihyjcx/4ovkzj
title: Gene_Gene_Bcin-BotPortal.tab

description: Cross-reference table between Botrytis cinerea BcinB010 gene ids and gene ids in other annotations.
DOI: 10.15454/ihyjcx/5pkxl2
title: Gene_Gene_Bcin-BotPortal_v2.tab

description: Cross-reference table between Botrytis cinerea BcinB010 gene ids and gene ids in other annotations. V2
DOI: 10.6084/m9.figshare.28052477
title: Supplementary Table 1-6

description: Supplementary Table 1-6
DOI: 10.6084/m9.figshare.c.3725014_d1.v1
title: MOESM1 of The comparison of automated clustering algorithms for resampling representative conformer ensembles with RMSD matrix

description: Additional file 1. Conformations of every entry under RCKmeans, RCDCT, RCPCA, and RCPCA-RBF.
DOI: 10.6084/m9.figshare.c.3725014_d1
title: MOESM1 of The comparison of automated clustering algorithms for resampling representative conformer ensembles with RMSD matrix

description: Additional file 1. Conformations of every entry under RCKmeans, RCDCT, RCPCA, and RCPCA-RBF.
DOI: 10.6084/m9.figshare.c.3725086_d1.v1
title: Additional file 1: of Generalizing cell segmentation and quantification

description: Source codes of the proposed framework with test images. (ZIP 31244Â kb)
DOI: 10.6084/m9.figshare.c.3725077_d3.v1
title: MOESM3 of Quality management architecture for social media data

description: Additional file 3. An example for data quality management of tweets. Example code can be compared with the corresponding data views (Figs. 14, 15).
DOI: 10.6084/m9.figshare.c.3725086_d1
title: Additional file 1: of Generalizing cell segmentation and quantification

description: Source codes of the proposed framework with test images. (ZIP 31244Â kb)
DOI: 10.6084/m9.figshare.c.3725077_d3
title: MOESM3 of Quality management architecture for social media data

description: Additional file 3. An example for data quality management of tweets. Example code can be compared with the corresponding data views (Figs. 14, 15).
DOI: 10.6084/m9.figshare.c.3725125_d3
title: Additional file 3 of Identification of long non-coding transcripts with feature selection: a comparative study

description: R scripts. R scripts adopted for the experiments described in the paper. (ZIP 44 kb)
DOI: 10.6084/m9.figshare.c.3725131_d4.v1
title: MOESM4 of Assessment of production practices of smallholder potato (Solanum tuberosum L.) farmers in Wolaita zone, southern Ethiopia

description: Additional file 4: SPSS Data document S1. Datasets.
DOI: 10.6084/m9.figshare.c.3725146_d2.v1
title: Additional file 2: of Comparison of nasopharyngeal and guttural pouch specimens to determine the optimal sampling site to detect Streptococcus equi subsp equi carriers by DNA amplification

description: Raw data of 123 samples (nasopharyngeal flocked swabs, nasopharyngeal washes, and gutturalpouch washes) from 40 different S. equi convalesecent horses tested for S. equi via SeeI PCR and eqbE LAMP on 44 different dates. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3725131_d4
title: MOESM4 of Assessment of production practices of smallholder potato (Solanum tuberosum L.) farmers in Wolaita zone, southern Ethiopia

description: Additional file 4: SPSS Data document S1. Datasets.
DOI: 10.6084/m9.figshare.c.3725146_d2
title: Additional file 2: of Comparison of nasopharyngeal and guttural pouch specimens to determine the optimal sampling site to detect Streptococcus equi subsp equi carriers by DNA amplification

description: Raw data of 123 samples (nasopharyngeal flocked swabs, nasopharyngeal washes, and gutturalpouch washes) from 40 different S. equi convalesecent horses tested for S. equi via SeeI PCR and eqbE LAMP on 44 different dates. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3725134_d6
title: Additional file 6 of Comprehensive evaluation of RNA-seq quantification methods for linearity

description: Table S1. Column 1 and 2 show the sample type and replicates index; Column 3 shows total read pairs, column 4-7 show the mapping rate from different quantification methods (Tophat, RSEM, Kallisto and Salmon). (XLS 61 kb)
DOI: 10.6084/m9.figshare.c.3725167_d5.v1
title: Additional file 6: Figure S5. of Exploring the evolutionary origin of floral organs of Erycina pusilla, an emerging orchid model system

description: MADS-box gene lineage trees. (a) FUL-, (b) AP3-, (c) PI-, (d) AG-, (e) STK-, (f) SEP- and (g) AGL6-like trees. Color codes: green node = speciation event; red node = duplication event. Branches are colored along a gradient between blue and red, in proportion to the value of omega (dN/dS) for the third (i.e. the highest) rate class in the BranchSiteREL analysis. Hence, blue and red branches may be interpreted as suggesting, respectively, stabilizing and diversifying selection. Purple branches implicate a moderate level of diversifying selection. (ZIP 1121 kb)
DOI: 10.6084/m9.figshare.c.3725167_d5
title: Additional file 6: Figure S5. of Exploring the evolutionary origin of floral organs of Erycina pusilla, an emerging orchid model system

description: MADS-box gene lineage trees. (a) FUL-, (b) AP3-, (c) PI-, (d) AG-, (e) STK-, (f) SEP- and (g) AGL6-like trees. Color codes: green node = speciation event; red node = duplication event. Branches are colored along a gradient between blue and red, in proportion to the value of omega (dN/dS) for the third (i.e. the highest) rate class in the BranchSiteREL analysis. Hence, blue and red branches may be interpreted as suggesting, respectively, stabilizing and diversifying selection. Purple branches implicate a moderate level of diversifying selection. (ZIP 1121 kb)
DOI: 10.6084/m9.figshare.c.3725179_d1.v1
title: MOESM1 of Gene expression differences between PAXgene and Tempus blood RNA tubes are highly reproducible between independent samples and biobanks

description: Additional file 1. Overview of all samples used in this study and their respective information.
DOI: 10.6084/m9.figshare.c.3725179_d1
title: MOESM1 of Gene expression differences between PAXgene and Tempus blood RNA tubes are highly reproducible between independent samples and biobanks

description: Additional file 1. Overview of all samples used in this study and their respective information.
DOI: 10.6084/m9.figshare.c.3726187_d3.v1
title: Additional file 12: of Gene and protein analysis reveals that p53 pathway is functionally inactivated in cytogenetically normal Acute Myeloid Leukemia and Acute Promyelocytic Leukemia

description: DEGs related oxidative stress. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3726166_d3
title: MOESM3 of An immunohistochemical, enzymatic, and behavioral study of CD157/BST-1 as a neuroregulator

description: Additional file 3. Number of entries to the dark zone.
DOI: 10.6084/m9.figshare.c.3726166_d4.v1
title: MOESM4 of An immunohistochemical, enzymatic, and behavioral study of CD157/BST-1 as a neuroregulator

description: Additional file 4. Time spent mobile and immobile in the inside zone.
DOI: 10.6084/m9.figshare.c.3726187_d3
title: Additional file 12: of Gene and protein analysis reveals that p53 pathway is functionally inactivated in cytogenetically normal Acute Myeloid Leukemia and Acute Promyelocytic Leukemia

description: DEGs related oxidative stress. (XLS 33 kb)