cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.11578/1562069
title: Real-time capable modeling of neutral beam injection on NSTX-U using neural networks

description: A new model of heating, current drive, torque and other effects of neutral beam injection on NSTX-U that uses neural networks has been developed. The model has been trained and tested on the results of the Monte Carlo code NUBEAM for the database of experimental discharges taken during the first operational campaign of NSTX-U. By projecting flux surface quantities onto empirically derived basis functions, the model is able to efficiently and accurately reproduce the behavior of both scalars, like the total neutron rate and shine through, and profiles, like beam current drive and heating. The model has been tested on the NSTX-U real-time computer, demonstrating a rapid execution time orders of magnitude faster than the Monte Carlo code that is well suited for the iterative calculations needed to interpret experimental results, optimization during scenario development activities, and real-time plasma control applications. Simulation results of a proposed design for a nonlinear observer that embeds the neural network calculations to estimate the poloidal flux profile evolution, as well as effective charge and fast ion diffusivity, are presented.
DOI: 10.11578/1562076
title: Gas Puff Imaging Diagnostics of Edge Plasma Turbulence in Magnetic Fusion Devices

description: Gas puff imaging (GPI) is a diagnostic of plasma turbulence which usesa puff of neutral gas at the plasma edge to increase the local visiblelight emission for improved space-time resolution of plasmafluctuations. This paper reviews gas puff imaging diagnostics of edgeplasma turbulence in magnetic fusion research, with a focus on theinstrumentation, diagnostic cross-checks, and interpretationissues. The gas puff imaging hardware, optics, and detectors aredescribed for about 10 GPI systems implemented over the past ~15years. Comparison of GPI results with other edge turbulence diagnosticresults are described and many common features are observed. Severalissues in the interpretation of GPI measurements are discussed, andpotential improvements in hardware and modeling are suggested.
DOI: 10.11578/1562077
title: Neutral recycling effects on ITG turbulence

description: The effects of recycled neutral atoms on tokamak ion temperaturegradient (ITG) driven turbulence have been investigated in a steepedge pedestal, magnetic separatrix configuration, with the full-fedge gryokinetic code XGC1. Ion temperature gradient turbulence isthe most fundamental and robust edge plasma instability, having a longradial correlation length and an ability to impact other forms ofpedestal turbulence. The neutral atoms enhance the ITG turbulence,first, by increasing the ion temperature gradient in the pedestal viathe cooling effects of charge exchange and, second, by a relativereduction in the ExB shearing rate.
DOI: 10.11578/1562082
title: Study of liquid metal surface wave damping in the presence of magnetic fields and electrical currents

description: Experiments and predictions of surface wave damping in liquid metal due to a surface aligned magnetic field and externally regulated j × B force are presented. Fast-flowing, liquid-metal plasma facing components (LM-PFCs) are a proposed alternative to solid PFCs that are unable to handle the high heat flux, thermal stresses, and radiation damage in a tokamak. The significant technical challenges associated with LM-PFCs compared to solid PFCs are justified by greater heat flux management, self-healing properties, and reduced particle recycling. However, undesirable engineering challenges such as evaporation and splashing of the liquid metal introduce excessive impurities into the plasma and degrade plasma performance. Evaporation may be avoided through high-speed flow that limits temperature rise of the liquid metal by reducing heat flux exposure time, but as flow speed increases the surface may become more turbulent and prone to splashing and uneven surfaces. Wave damping is one mechanism that reduces surface disturbance and thus the chances of liquid metal impurity introduction into the plasma. Experiments on the Liquid Metal eXperiment Upgrade (LMX-U) examined damping under the influence of transverse magnetic fields and vertically directed Lorentz force.
DOI: 10.11578/1562086
title: TRANSP-based closed-loop simulations of current profile optimal regulation in NSTX-Upgrade

description: Active control of the toroidal current density profile is critical for the upgraded National Spherical Torus eXperiment device (NSTX-U) to maintain operation at the desired high-performance, MHD-stable, plasma regime. Initial efforts towards current density profile control have led to the development of a control-oriented, physics-based, plasma-response model, which combines the magnetic diffusion equation with empirical correlations for the kinetic profiles and the non-inductive current sources. The developed control-oriented model has been successfully tailored to the NSTX-U geometry and actuators. Moreover, a series of efforts have been made towards the design of model-based controllers, including a linear-quadratic-integral optimal control strategy that can regulate the current density profile around a prescribed target profile while rejecting disturbances. In this work, the tracking performance of the proposed current-profile optimal controller is tested in numerical simulations based on the physics-oriented code TRANSP. These high-fidelity closed-loop simulations, which are a critical step before experimental implementation and testing, are enabled by a flexible framework recentlydeveloped to perform feedback control design and simulation in TRANSP.
DOI: 10.11578/1562090
title: Feedback control design for non-inductively sustained scenarios in NSTX-U using TRANSP

description: This paper examines a method for real-time control of non-inductively sustained scenarios in NSTX-U by using TRANSP,a time-dependent integrated modeling code for prediction and interpretive analysis of tokamak experimental data, as asimulator. The actuators considered for control in this work are the six neutral beam sources and the plasma boundaryshape. To understand the response of the plasma current, stored energy, and central safety factor to these actuatorsand to enable systematic design of control algorithms, simulations were run in which the actuators were modulated anda linearized dynamic response model was generated. A multi-variable model-based control scheme that accounts for thecoupling and slow dynamics of the system while mitigating the effect of actuator limitations was designed andsimulated. Simulations show that modest changes in the outer gap and heating power can improve the response time ofthe system, reject perturbations, and track target values of the controlled values.
DOI: 10.11578/1562092
title: Plasma boundary shape control and real-time equilibrium reconstruction on NSTX-U

description: The upgrade to the National Spherical Torus eXperiment (NSTX-U) included two main improvements: a larger center-stack, enabling higher toroidal field and longer pulse duration, and the addition of three new tangentially aimed neutral beam sources, which increase available heating and current drive, and allow for flexibility in shaping power, torque, current, and particle deposition profiles. To best use these new capabilities and meet the high-performance operational goals of NSTX-U, major upgrades to the NSTX-U Control System (NCS) hardware and software have been made. Several control algorithms, including those used for real-time equilibrium reconstruction and shape control, have been upgraded to improve and extend plasma control capabilities. As part of the commissioning phase of first plasma operations, the shape control system was tuned to control the boundary in both inner-wall limited and diverted discharges. It has been used to accurately track the requested evolution of the boundary (including the size of the inner gap between the plasma and central solenoid, which is a challenge for the ST configuration), X-point locations, and strike point locations, enabling repeatable discharge evolutions for scenario development and diagnostic commissioning.
DOI: 10.25982/63776.53/1637360
title: Isolate genomes from "Ecogenomics of groundwater viruses suggests niche differentiation linked to specific environmental tolerance"

description: Ecogenomics of groundwater viruses suggests niche differentiation linked to specific environmental tolerance. This Narrative contains data for the 261 ENIGMA isolates described in the paper. See Table S2 for a complete list.
DOI: 10.18140/flx/1669661
title: FLUXNET-CH4 US-A03 ARM-AMF3-Oliktok

description: This is the FLUXNET-CH4 version of the carbon flux data for the site US-A03 ARM-AMF3-Oliktok.
DOI: 10.18140/flx/1669662
title: FLUXNET-CH4 US-A10 ARM-NSA-Barrow

description: This is the FLUXNET-CH4 version of the carbon flux data for the site US-A10 ARM-NSA-Barrow.
DOI: 10.25982/95771.20/1828591
title: The moderately defficient enzyme: Catalysis-related damage in vivo and its repair

description: Enzymes have in vivo lifespans. Analysis of lifespans – lifetime totals of catalytic turnovers – suggests that non-survivable collateral chemical damage from the very reactions that enzymes catalyze is a common but underdiagnosed cause of enzyme death. Analysis also implies that many enzymes are moderately deficient in that their active-site regions are not naturally as hardened against such collateral damage as they could be, leaving room for improvement by rational design or directed evolution. Enzyme lifespan might also be improved by engineering systems that repair otherwise fatal active-site damage, of which a handful are known and more are inferred to exist. Unfortunately, the data needed to design and execute such improvements is lacking: there are too few measurements of in vivo lifespan, and existing information on the extent, nature, and mechanisms of active-site damage and repair during normal enzyme operation is too scarce, anecdotal, and speculative to act on. Fortunately, advances in proteomics, metabolomics, cheminformatics, comparative genomics, and structural biochemistry now empower a systematic, data-driven approach to identify, predict, and validate instances of active-site damage and its repair. These capabilities would be practically useful in enzyme redesign and improvement of in-use stability, and could change thinking about which enzymes die young in vivo, and why.
DOI: 10.5439/1973570
title: kazrshipcormd (c1)

description: kazrshipcormd
DOI: 10.5439/1973573
title: gvr (s1)

description: The G-band vapor radiometer (GVR) provides time-series measurements of brightness temperatures from four double sideband channels around the 183.31-GHz water vapor line. Atmospheric emission in this spectral region is primarily due to water vapor, with some influence from liquid water. The GVR is approximately 30 times more sensitive to water vapor than the two-channel microwave radiometer (MWR) for a precipitable water vapor (PWV) amount of less than 2.5 mm. Measurements from this instrument are, therefore, especially useful during low-humidity conditions (PWV &lt; 5 mm). Data products include mentor-processed data.
DOI: 10.5439/1973574
title: 1290bsrwpprecipavg (b1)

description: The radar wind profiler/radio acoustic sounding system (RWP/RASS), available in 915-MHz (for U.S. deployments) and 1290-MHz (for foreign deployments), measures wind profiles and backscattered signal strength between (nominally) 0.1 km and 5 km and virtual temperature profiles between 0.1 km and 2.5 km. However, ARM no longer operates the RASS portion. The RWP transmits electromagnetic energy into the atmosphere in as many as five directions (four tilted in opposing vertical planes and on vertical) and measures the strength and frequency of backscattered energy. Calculation of the Doppler shift of the returned signal allows calculation of the atmospheric wind profile.
DOI: 10.25984/1973648
title: Better Buildings Neighborhood Program Single-Family Home Upgrade Project Dataset

description: Building project data for 75,110 single-family homes upgraded between July 1, 2010, and September 30, 2013 from the Better Building Neighborhood Program. This dataset includes a documentation file and three data tables. Reported data for some elements have been transformed and data for some upgraded homes have been omitted to protect privacy. See documentation file for details.
DOI: 10.5281/zenodo.7942510
title: Paper data

description: Paper data for this study.
DOI: 10.5281/zenodo.7943270
title: Paper data

description: Paper data for this study.
DOI: 10.5281/zenodo.7937951
title: The molecular raw data of microbial communities associated with fish gut - in vitro model system using 16S rRNA Illumina amplicon sequencing approach.

description: This data on the microbial communities and its diversity associated with fish gut. The samples were obtained from fish gut - in vitro model system using 16S rRNA Illumina amplicon sequencing approach.
DOI: 10.6084/m9.figshare.22874387
title: A water surface object detection dataset with complex illuminating condition

description: This dataset contains 433 images from WSODD, 127 images from the boat-types recognition dataset, 417 images containing common objects on the water surface from publicly available photos on the Internet to build the validation dataset. The dataset include totally 977 images and 2138 instances.
DOI: 10.21227/p3r8-vh55
title: FeCAP Resonator Large Signal Measurement Data

description: CMOS-MEMS resonators seamlessly integrated in advanced integrated circuit (IC) technology have the unique capability to enable unprecedented integration of stable frequency references, acoustic spectral processors, and physical sensors. Demonstrations of transducers leveraging piezoelectric properties of emerging ferroelectric materials such as Hafnium Zirconium Oxide (HZO) and Aluminum Scandium Nitride (AlScN) enable high figure of merit (FOM = k^2Q) resonators over a wide range of frequencies. CMOS-integrated ferroelectric transducers using a thickness-scaled variant of these films for low voltage operation are feasible by leveraging advancements in ferroelectric random access memory (FRAM) and ferroelectric field effect transistors (FeFETs). However, until now, there has not been a full treatment of the effects of nonlinear large-signal behaviour on the performance of electromechanical systems built using ferroelectric transducers in the low coercive voltage regime. In this work, CMOS-MEMS resonators in a 130 nm process operating at 700 MHz have been used as a vehicle for understanding the performance impact of nonlinear piezoelectric transduction on frequency references and acoustic filters. The first nonlinear large signal model for such resonators has been developed and employed to extract the nonlinear characteristics over different biasing and applied power. Operating conditions and design guidelines have also been developed for these applications, which can be extended to all resonators of this class. The crystallized understanding of large-signal operation of ferroelectric transducers presented in this work provides opportunities to design and demonstrate new capabilities of electromechanical devices in monolithic CMOS-MEMS platforms.
DOI: 10.34944/dspace/8385
title: Prevalence of Venous Thromboembolism Scoping Review Search Strategy

description: To identify studies to include or consider for this scoping review, the review team worked with a medical librarian (TN) to develop detailed search strategies for each database. The PRISMA-S extension was followed for search reporting. The medical librarian (TN) developed the search for PubMed (NLM) and translated the search for every database searched. The PubMed (NLM) search strategy was reviewed by the research team to check for accuracy and term relevancy, and all final searches were peer-reviewed by another medical librarian (JB) following the PRESS checklist. The databases included in this search are PubMed (NLM), Embase (Elsevier), CINHAL (Ebscohost), Cochrane Central (Wiley), and Web of Science (Clarivate Analytics) using a combination of keywords and subject headings. A grey literature search included a clinical trials registry (clinicaltrials.gov), WHO-International Clinical Trials Registry Platform (https://trialsearch.who.int/), and Search.bioPreprint (https://www.hsls.pitt.edu/). The search was limited to publication year 2000 - 2023. All final searches were performed on February 17, 2023 by the librarian and were fully reported (TN).
description: To identify studies to include or consider for this scoping review, the review team worked with a medical librarian (TN) to develop detailed search strategies for each database. The PRISMA-S extension was followed for search reporting. The medical librarian (TN) developed the search for PubMed (NLM) and translated the search for every database searched. The PubMed (NLM) search strategy was reviewed by the research team to check for accuracy and term relevancy, and all final searches were peer-reviewed by another medical librarian (JB) following the PRESS checklist. The databases included in this search are PubMed (NLM), Embase (Elsevier), CINHAL (Ebscohost), Cochrane Central (Wiley), and Web of Science (Clarivate Analytics) using a combination of keywords and subject headings. A grey literature search included a clinical trials registry (clinicaltrials.gov), WHO-International Clinical Trials Registry Platform (https://trialsearch.who.int/), and Search.bioPreprint (https://www.hsls.pitt.edu/). The search was limited to publication year 2000 - 2023. All final searches were performed on February 17, 2023 by the librarian and were fully reported (TN).
DOI: 10.25901/42kx-tb93
title: Far North Queensland, Leaf Level Physiology, Chemistry and Structural Traits Data, Daintree Rainforest Observatory, Cape Tribulation Site, 2012
DOI: 10.6084/m9.figshare.22877054
title: Original data for analysis.

description: Orignial data for analysis.
DOI: 10.6084/m9.figshare.22877054.v1
title: Original data for analysis.

description: Orignial data for analysis.
DOI: 10.6084/m9.figshare.22785903
title: S-File2_open_active_chromatin_anno_chr16 from Hypoxia induces polycystin-1 expression in the renal epithelium

description: open and active chromatin regions on chromosome 16 of human kidneys
DOI: 10.6084/m9.figshare.22785903.v1
title: S-File2_open_active_chromatin_anno_chr16 from Hypoxia induces polycystin-1 expression in the renal epithelium

description: open and active chromatin regions on chromosome 16 of human kidneys
DOI: 10.6084/m9.figshare.22785906
title: S-File1_diff_expressed_genes from Hypoxia induces polycystin-1 expression in the renal epithelium

description: differentially expressed genes upon HIF-stimulation in human primary tubule cells
DOI: 10.6084/m9.figshare.22785906.v1
title: S-File1_diff_expressed_genes from Hypoxia induces polycystin-1 expression in the renal epithelium

description: differentially expressed genes upon HIF-stimulation in human primary tubule cells
DOI: 10.5519/qd.oct4iag9
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.22875044
title: <strong>Mid-Miocene North–south Trending Dikes in the Aduo Basin of Northeastern Tibet: New Constraints on the Timing of Plateau Uplift</strong>

description: The research data used in the paper "<strong> </strong>Mid-Miocene North–south Trending Dikes in the Aduo Basin of Northeastern Tibet: New Constraints on the Timing of Plateau Uplift " submitted to GRL. <br> Data statement: Clinopyroxene major element compositions by EPMA (Table S1), phlogopite major element compositions by EPMA (Table S2), sanidine major element compositions by EPMA (Table S3), apatite major element compositions by EPMA (Table S4), Phlogopite 40Ar/39Ar data for the Aduo lamprophyres (Table S5) and whole-rock geochemical data(Table S6 ).
DOI: 10.6084/m9.figshare.22875044.v2
title: <strong>Mid-Miocene North–south Trending Dikes in the Aduo Basin of Northeastern Tibet: New Constraints on the Timing of Plateau Uplift</strong>

description: The research data used in the paper "<strong> </strong>Mid-Miocene North–south Trending Dikes in the Aduo Basin of Northeastern Tibet: New Constraints on the Timing of Plateau Uplift " submitted to GRL. <br> Data statement: Clinopyroxene major element compositions by EPMA (Table S1), phlogopite major element compositions by EPMA (Table S2), sanidine major element compositions by EPMA (Table S3), apatite major element compositions by EPMA (Table S4), Phlogopite 40Ar/39Ar data for the Aduo lamprophyres (Table S5) and whole-rock geochemical data(Table S6 ).
DOI: 10.6084/m9.figshare.22875044.v1
title: Aduo lamprophyres data sets

description: Clinopyroxene major element compositions by EPMA (Table S1), phlogopite major element compositions by EPMA (Table S2), sanidine major element compositions by EPMA (Table S3), apatite major element compositions by EPMA (Table S4), Phlogopite 40Ar/39Ar data for the Aduo lamprophyres (Table S5) and whole-rock geochemical data(Table S6 ).
DOI: 10.6084/m9.figshare.22877482.v1
title: Additional file 10 of MUS81 cleaves TOP1-derived lesions and other DNA–protein cross-links

description: Additional file 10. Individual data values. Individual data values used for the graphs present in this paper.
DOI: 10.6084/m9.figshare.22877482
title: Additional file 10 of MUS81 cleaves TOP1-derived lesions and other DNA–protein cross-links

description: Additional file 10. Individual data values. Individual data values used for the graphs present in this paper.
DOI: 10.6084/m9.figshare.22877491
title: Additional file 1 of Progressive resolution optimizer (PRO) predominates over photon optimizer (PO) in sparing of spinal cord for spine SABR VMAT plans

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.22877491.v1
title: Additional file 1 of Progressive resolution optimizer (PRO) predominates over photon optimizer (PO) in sparing of spinal cord for spine SABR VMAT plans

description: Supplementary Material 1
DOI: 10.25442/hku.21075778
title: Supporting data for "Regulation of Vascular Tone by Adipose SIRT1"

description: Cardiovascular diseases are a global epidemic. New drug targets and therapeutic approaches aimed at mitigating this global cancer is top priority. This project investigated the role of adipose SIRT1 in perivascular adipose tissue modulation of vascular tone. Techniques such as wire myography, quatitative PCR, ion detection assays, microscopy, etc. were employed in the project. Also, transgenic mouse models involving overexpression of SIRT1 and Triadin were used. The findings suggested that SIRT1 overexpression in adipose tissues upregulates intracellular calcium machinary activity to induce mitochondrial quality control and mitohormesis, with beneficial PVAT phenotype.The beneficial effect of adipose SIRT1 was found to be via gatekeeping regulatory effect on intracellular calcium release complexes.
DOI: 10.25442/hku.21075778.v1
title: Supporting data for "Regulation of Vascular Tone by Adipose SIRT1"

description: Cardiovascular diseases are a global epidemic. New drug targets and therapeutic approaches aimed at mitigating this global cancer is top priority. This project investigated the role of adipose SIRT1 in perivascular adipose tissue modulation of vascular tone. Techniques such as wire myography, quatitative PCR, ion detection assays, microscopy, etc. were employed in the project. Also, transgenic mouse models involving overexpression of SIRT1 and Triadin were used. The findings suggested that SIRT1 overexpression in adipose tissues upregulates intracellular calcium machinary activity to induce mitochondrial quality control and mitohormesis, with beneficial PVAT phenotype.The beneficial effect of adipose SIRT1 was found to be via gatekeeping regulatory effect on intracellular calcium release complexes.
DOI: 10.6084/m9.figshare.22877590
title: Additional file 1 of Transcriptome profiling of barley in response to mineral and organic fertilizers

description: Additional file 1: Fig. S1. Reads distribution of each sample on genome.