cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13311246
title: Multi-modality medical image dataset for medical image processing in Python lesson

description: This dataset contains a collection of medical imaging files for use in the "Medical Image Processing with Python" lesson, developed by the Netherlands eScience Center. 

The dataset includes:



SimpleITK compatible files: MRI T1 and CT scans (training_001_mr_T1.mha, training_001_ct.mha), digital X-ray (digital_xray.dcm in DICOM format), neuroimaging data (A1_grayT1.nrrd, A1_grayT2.nrrd). Data have been downloaded from here. 

MRI data: a T2-weighted image (OBJECT_phantom_T2W_TSE_Cor_14_1.nii in NIfTI-1 format). Data have been downloaded from here. 

Example images for the machine learning lesson: chest X-rays (rotatechest.png, other_op.png), cardiomegaly example (cardiomegaly_cc0.png).

Additional anonymized data: TBA


These files represent various medical imaging modalities and formats commonly used in clinical research and practice. They are intended for educational purposes, allowing students to practice image processing techniques, machine learning applications, and statistical analysis of medical images using Python libraries such as scikit-image, pydicom, and SimpleITK.
DOI: 10.5281/zenodo.13932977
title: Multi-modality medical image dataset for medical image processing in Python lesson

description: This dataset contains a collection of medical imaging files for use in the "Medical Image Processing with Python" lesson, developed by the Netherlands eScience Center. 

The dataset includes:



SimpleITK compatible files: MRI T1 and CT scans (training_001_mr_T1.mha, training_001_ct.mha), digital X-ray (digital_xray.dcm in DICOM format), neuroimaging data (A1_grayT1.nrrd, A1_grayT2.nrrd). Data have been downloaded from here. 

MRI data: a T2-weighted image (OBJECT_phantom_T2W_TSE_Cor_14_1.nii in NIfTI-1 format). Data have been downloaded from here. 

Example images for the machine learning lesson: chest X-rays (rotatechest.png, other_op.png), cardiomegaly example (cardiomegaly_cc0.png).

Array data: Array data for the Intro to Medical Imaging lesson. Numpy arrays were created by processing and manipulation of publicly available data i.e. from the Schepp Logan phantom and from the NYU FastMRI dataset

Additional anonymized data: TBA


These files represent various medical imaging modalities and formats commonly used in clinical research and practice. They are intended for educational purposes, allowing students to practice image processing techniques, machine learning applications, and statistical analysis of medical images using Python libraries such as scikit-image, pydicom, and SimpleITK.
DOI: 10.5281/zenodo.14032428
title: Multi-modality medical image dataset for medical image processing in Python lesson

description: This dataset contains a collection of medical imaging files for use in the "Medical Image Processing with Python" lesson, developed by the Netherlands eScience Center. 

The dataset includes:



SimpleITK compatible files: MRI T1 and CT scans (training_001_mr_T1.mha, training_001_ct.mha), digital X-ray (digital_xray.dcm in DICOM format), neuroimaging data (A1_grayT1.nrrd, A1_grayT2.nrrd). Data have been downloaded from here. 

MRI data: a T2-weighted image (OBJECT_phantom_T2W_TSE_Cor_14_1.nii in NIfTI-1 format). Data have been downloaded from here. 

Example images for the machine learning lesson: chest X-rays (rotatechest.png, other_op.png), cardiomegaly example (cardiomegaly_cc0.png).

Array data: Array data for the Intro to Medical Imaging lesson. Numpy arrays were created by processing and manipulation of publicly available data i.e. from the Schepp Logan phantom and from the NYU FastMRI dataset

Data for the anonymization exercises: ultrasound (identifiable_us.jpg) dowloaded from here, and DICOM data (our_sample_dicom.dcm) shared for this course specifically by a colleague

Additional anonymized data: TBA


These files represent various medical imaging modalities and formats commonly used in clinical research and practice. They are intended for educational purposes, allowing students to practice image processing techniques, machine learning applications, and statistical analysis of medical images using Python libraries such as scikit-image, pydicom, and SimpleITK.
DOI: 10.5281/zenodo.14592145
title: Multi-modality medical image dataset for medical image processing in Python lesson

description: This dataset contains a collection of medical imaging files for use in the "Medical Image Processing with Python" lesson, developed by the Netherlands eScience Center. 

The dataset includes:



SimpleITK compatible files: MRI T1 and CT scans (training_001_mr_T1.mha, training_001_ct.mha), digital X-ray (digital_xray.dcm in DICOM format), neuroimaging data (A1_grayT1.nrrd, A1_grayT2.nrrd). Data have been downloaded from here. 

MRI data: a T2-weighted image (OBJECT_phantom_T2W_TSE_Cor_14_1.nii in NIfTI-1 format). Data have been downloaded from here. 

Example images for the machine learning lesson: chest X-rays (rotatechest.png, other_op.png), cardiomegaly example (cardiomegaly_cc0.png).

Array data: Array data for the Intro to Medical Imaging lesson. Numpy arrays were created by processing and manipulation of publicly available data i.e. from the Schepp Logan phantom and from the NYU FastMRI dataset

Data for the anonymization exercises: ultrasound (identifiable_us.jpg) dowloaded from here, and DICOM data (our_sample_dicom.dcm) shared for this course specifically by a colleague

Histopathology data: histopathology slide images from openslide library samples in the freely distributable test data 


These files represent various medical imaging modalities and formats commonly used in clinical research and practice. They are intended for educational purposes, allowing students to practice image processing techniques, machine learning applications, and statistical analysis of medical images using Python libraries such as scikit-image, pydicom, and SimpleITK.
DOI: 10.15468/dl.hs5p9u
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Amauropelta tamandarei (Rosenst.) Salino & T.E.Almeida",
 "TaxonKey is Thelypteris tamandarei (Rosenst.) Ponce"
 ]
 }
 ]
}

 The dataset includes 48 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259909-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ygg7he
title: Occurrence Download

description: A dataset containing 1605587 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Haliaeetus leucocephalus (Linnaeus, 1766)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1605587 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012237-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f8h4bn
title: Occurrence Download

description: A dataset containing 164581 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((12.48668 55.66474,12.5589 55.66458,12.56043 55.70594,12.5011 55.70607,12.48776 55.70619,12.48668 55.66474))"
 ]
}

 The dataset includes 164581 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0257021-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wk4qjk
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Borojoa patinoi Cuatrec."
 ]
}

 The dataset includes 101 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074809-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yvehrx
title: Occurrence Download

description: A dataset containing 684 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gymnopleurus sturmi MacLeay, 1821"
 ]
}

 The dataset includes 684 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011382-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpre4f
title: Occurrence Download

description: A dataset containing 800 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Holcosus festivus (Lichtenstein & Martens, 1856)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 800 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012238-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3t6x8
title: Occurrence Download

description: A dataset containing 877 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Amauropelta rivularioides (Fée) Salino & T.E.Almeida",
 "TaxonKey is Aspidium rivularioides Fée",
 "TaxonKey is Thelypteris rivularioides (Fée) Abbiatti"
 ]
 }
 ]
}

 The dataset includes 877 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259903-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e72zrn
title: Occurrence Download

description: A dataset containing 363 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-5.65796 36.87737,-5.13321 36.87737,-5.13321 37.12045,-5.65796 37.12045,-5.65796 36.87737))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Erica arborea L."
 ]
}

 The dataset includes 363 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238835-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dhha23
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Vernonia extensa Wall. ex DC."
 ]
}

 The dataset includes 93 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0267024-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vc742y
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Loepa katinka Westwood, 1847"
 ]
}

 The dataset includes 53 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0268150-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7gnv2m
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Puya raimondii Harms"
 ]
}

 The dataset includes 62 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008250-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cpxdqd
title: Occurrence Download

description: A dataset containing 2014 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Vigna caracalla (L.) Verdc.",
 "TaxonKey is Cocculus carolinus (L.) DC.",
 "TaxonKey is Cocculus hirsutus (L.) Diels",
 "TaxonKey is Cocculus laurifolius DC.",
 "TaxonKey is Coccus hesperidum Linnaeus, 1758",
 "TaxonKey is Cochlearia glastifolia L.",
 "TaxonKey is Cochlearia megalosperma (Maire) Vogt"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2014 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012240-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nfkyw3
title: Occurrence Download

description: A dataset containing 1577 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Clangula hyemalis (Linnaeus, 1758)",
 "Year 2011-2018"
 ]
}

 The dataset includes 1577 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237313-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2cpswj
title: Occurrence Download

description: A dataset containing 325 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bactris mexicana Mart."
 ]
}

 The dataset includes 325 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012240-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dacnvy
title: Occurrence Download

description: A dataset containing 1023 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Christella conspersa (Schrad.) Á.Löve & D.Löve",
 "TaxonKey is Thelypteris conspersa (Schrad.) A.R.Sm."
 ]
 }
 ]
}

 The dataset includes 1023 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259914-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8y2ec
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Papua New Guinea",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Loriculus tener P.L.Sclater, 1877"
 ]
}

 The dataset includes 30 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0214142-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vv2w6y
title: Occurrence Download

description: A dataset containing 146158 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potamopyrgus antipodarum (J.E.Gray, 1843)"
 ]
}

 The dataset includes 146158 records from 289 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012597-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5nay26
title: Occurrence Download

description: A dataset containing 59998 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Naturalis Biodiversity Center (NL) - Cnidaria"
 ]
}

 The dataset includes 59998 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003787-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4arawt
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Year 2010-2018",
 "HasCoordinate is true",
 "TaxonKey is Pseudobombax ellipticum (Kunth) Dugand",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 68 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012241-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.us2fc3
title: Occurrence Download

description: A dataset containing 1003 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tubulidentata"
 ]
}

 The dataset includes 1003 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219790-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbpzjh
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mesoplodon mirus True, 1913"
 ]
}

 The dataset includes 86 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242964-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vtyvva
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Liolaemus koslowskyi Etheridge, 1993",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 98 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012241-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tgpger
title: Occurrence Download

description: A dataset containing 12539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The Coleoptera collection (EC) of the Muséum national d'Histoire naturelle (MNHN - Paris)"
 ]
}

 The dataset includes 12539 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003788-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ejkr2
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anemia gomesii Christ"
 ]
}

 The dataset includes 23 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229151-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8wgyng
title: Occurrence Download

description: A dataset containing 199 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Urtica kioviensis Rogow."
 ]
}

 The dataset includes 199 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0225293-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czd592
title: Occurrence Download

description: A dataset containing 680 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Odocoileus virginianus (Zimmermann, 1780)",
 "TaxonKey is Odocoileus virginianus macrourus (Rafinesque, 1817)",
 "TaxonKey is Odocoileus virginianus margaritae Osgood, 1910",
 "TaxonKey is Odocoileus virginianus rothschildi (Thomas, 1902)",
 "TaxonKey is Odocoileus virginianus thomasi Merriam, 1898",
 "TaxonKey is Odocoileus virginianus virginianus",
 "TaxonKey is Odocoileus virginianus borealis Miller, 1900",
 "TaxonKey is Odocoileus virginianus mayensis",
 "TaxonKey is Odocoileus virginianus sinaloae J.A.Allen, 1903",
 "TaxonKey is Odocoileus virginianus carminis Goldman & Kellog, 1940"
 ]
 }
 ]
}

 The dataset includes 680 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013079-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tgetgh
title: Occurrence Download

description: A dataset containing 1985 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Hippopotamus amphibius Linnaeus, 1758",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1985 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012241-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.md42d6
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "Geometry POLYGON((120.74872 12.40734,120.25485 12.83764,116.69194 12.85483,115.86295 7.54488,121.78937 7.56236,120.74872 12.40734))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tridacna Bruguière, 1797"
 ]
}

 The dataset includes 34 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219791-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.997pxs
title: Occurrence Download

description: A dataset containing 2067 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Cenchrus incertus M.A.Curtis"
 ]
}

 The dataset includes 2067 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0225294-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uz26c2
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Buxus sclerophylla Eg.Köhler"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240050-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ju9wfw
title: Occurrence Download

description: A dataset containing 1919 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panyapedaliodes Forster, 1964"
 ]
}

 The dataset includes 1919 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012241-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.