cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4729639.v2
title: Data_survey.xlsx

description: This file contains the responses from 135 teachers to the questionnaire for measuring teachers' attitudes toward teaching integrated STEM. The meaning of the item codes can be found in the accompanying document.
DOI: 10.6084/m9.figshare.4729627.v1
title: Knotting task execution based a hand-rope relation

description: In this paper, we focus on relationship between the rope and fingers to implement a knot and estimate error occurred during execution of knotting task. In the previous work, the authors have proposed a method for making various knots from synthesis of basic operations called skills that are derived from analyzing the knotting processes. Each individual skill has an operation to handle the rope and conditions for executing and completing the task skill. By combining these skills, we can make the whole knotting process robust. In this paper, the ‘relations’, which describe the positions of the rope relative to the fingers, found from the successful cases, using the teaching data, were defined as the conditions of the task skills. Relation of rope and fingers at a specific state is presented by using propositional variables and logical connectives. Knotting skills were constructed to be executed robustly using the detected conditions. Occurrence of an error is estimated by finding out an abnormal relation. In this case, a corrective action can be inserted to modify the position of contact points, which are relative to the unsatisfied conditions to satisfy the detected conditions; therefore, skill execution is more reliable. We confirm the effectiveness of the methods through experiments.
DOI: 10.6084/m9.figshare.4729639.v1
title: Data_survey.xlsx

description: This file contains the responses from 135 teachers to the questionnaire for measuring teachers' attitudes toward teaching integrated STEM. The meaning of the item codes can be found in the accompanying document.
DOI: 10.6084/m9.figshare.4729597
title: Miscellaneous data

description: datasets of populations of the community, etc.
DOI: 10.6084/m9.figshare.4729597.v1
title: Miscellaneous data

description: datasets of populations of the community, etc.
DOI: 10.6084/m9.figshare.4729594
title: 166 strains.xlsx

description: Data sets for 166 uropathogenic E. coli isolates from the patients with community-acquired acute urinary tract infections.
DOI: 10.6084/m9.figshare.4729594.v1
title: 166 strains.xlsx

description: Data sets for 166 uropathogenic E. coli isolates from the patients with community-acquired acute urinary tract infections.
DOI: 10.6084/m9.figshare.4729348
title: Diversity of culturable nocardioform actinomycetes from wastewater treatment plants in Spain and their role in the biodegradability of aromatic compounds

description: Currently, municipal and industrial wastewater treatment plants (WWTPs) are mainly focusing on reduction of biological oxygen demand and on the removal of nutrients. However, there are microorganisms that interfere with the process. In this environment, there is a large diversity of microorganisms that have not been studied in detail and that could provide real and practical solutions to the foaming problems. Among such microorganisms, Gram-positive actinomycete bacteria are of special interest because they are known for producing secondary metabolites as well as chemically diverse compounds and for their capacity to degrade recalcitrant pollutants. Three different media were chosen to isolate actinomycetes from 28 WWTPs in Spain. A total of 189 activated sludge samples were collected; 126 strains were isolated and identified to belong to 1 suborder, i.e. <i>Corynebacterineae</i>, and 7 genera, i.e. <i>Corynebacterium, Dietzia, Gordonia, Mycobacterium, Rhodococcus, Tsukamurella and Williamsia</i>. Furthermore, 71 strains were capable of biodegrading at least 1 aromatic product, and that 27 of them amplified for catA gene. The results of this research help us understand the complexity of the foam-forming microbial populations in Spain and it shows that WWTPs can be a good source of microorganisms that can degrade phenol or naphthalene.
DOI: 10.6084/m9.figshare.4729348.v1
title: Diversity of culturable nocardioform actinomycetes from wastewater treatment plants in Spain and their role in the biodegradability of aromatic compounds

description: Currently, municipal and industrial wastewater treatment plants (WWTPs) are mainly focusing on reduction of biological oxygen demand and on the removal of nutrients. However, there are microorganisms that interfere with the process. In this environment, there is a large diversity of microorganisms that have not been studied in detail and that could provide real and practical solutions to the foaming problems. Among such microorganisms, Gram-positive actinomycete bacteria are of special interest because they are known for producing secondary metabolites as well as chemically diverse compounds and for their capacity to degrade recalcitrant pollutants. Three different media were chosen to isolate actinomycetes from 28 WWTPs in Spain. A total of 189 activated sludge samples were collected; 126 strains were isolated and identified to belong to 1 suborder, i.e. <i>Corynebacterineae</i>, and 7 genera, i.e. <i>Corynebacterium, Dietzia, Gordonia, Mycobacterium, Rhodococcus, Tsukamurella and Williamsia</i>. Furthermore, 71 strains were capable of biodegrading at least 1 aromatic product, and that 27 of them amplified for catA gene. The results of this research help us understand the complexity of the foam-forming microbial populations in Spain and it shows that WWTPs can be a good source of microorganisms that can degrade phenol or naphthalene.
DOI: 10.6084/m9.figshare.4729345
title: MCMC executable

description: This zip file contains all files required to run the MCMC analysis.
DOI: 10.6084/m9.figshare.4729333
title: Palatable food self-administration and reinstatement are not affected by dual orexin receptor antagonism

description: The effect of central microinjections of the dual orexin receptor antagonist, TCS 1102, on palatable food seeking in rats.<br><br>Data for a paper in Progress in Neuropsychopharmacology & Biological Psychiatry.<br><br><br>
DOI: 10.6084/m9.figshare.4729333.v1
title: Palatable food self-administration and reinstatement are not affected by dual orexin receptor antagonism

description: The effect of central microinjections of the dual orexin receptor antagonist, TCS 1102, on palatable food seeking in rats.<br><br>Data for a paper in Progress in Neuropsychopharmacology & Biological Psychiatry.<br><br><br>
DOI: 10.5281/zenodo.4012058
title: Replication data for: Consumer preference testing of boiled sweetpotato (Ipomoea batatas (L.) Lam.) using crowdsourced citizen science in Ghana and Uganda

description: Sweetpotato (<em>Ipomoea batatas</em> (L.) Lam.) is an underutilised crop with good adaptability under low rainfall conditions, poor soils, and minimal farm inputs or labour. It is a nutritionally rich, climate-smart perennial root crop. These agronomic attributes, together with the relatively short growing period, render it an ideal candidate crop for enhancing food security and improving livelihoods in Africa. A crowdsourcing citizen science approach, triadic comparison of technologies (<em>tricot</em>), could support the identification of potential genotypes for the market of sweetpotato. We evaluated whether the <em>tricot</em> approach can produce reliable information about consumer preferences. We studied consumer preferences related to boiled sweetpotato prepared from 27 genotypes in Ghana and Uganda. We were specifically interested in evaluating if a more independent style of evaluation (<em>Home tasting</em>) would produce results comparable to an approach that involves control over preparation (<em>Community tasting</em>). Two trials were performed and compared. In Home tasting 420 participants received raw roots in randomised variety combinations to cook, taste and score at their homes whilst in Centralised tasting, 1041 participants received the boiled varieties to taste and score at a centralised locations. Participants ranked the varieties in order of overall preference, color, and taste. The results show significant differences based on district, highlighting the importance of citizen science trials in identifying consumer preference based on geographic location. Both Home and Centralised tasting approaches gave similar rankings for best overall acceptability, which was strongly correlated to taste. Although there was gender balance amongst participants who took part in the Home tasting compared to the Centralised tasting exercise, no significant relationships between gender and the rankings for overall acceptability were observed. Our results show that the tricot approach can be successfully applied to consumer preference studies. Future studies should include more quality attributes to further decipher the taste attribute used by consumers in ranking the varieties. Overall, breeders can benefit from using the citizen science to identify favourable consumer quality traits to target in demand-led breeding programmes, leading to increased uptake of new varieties.
DOI: 10.6084/m9.figshare.4728727
title: JurgensGaylord_DataFile1.xlsx

description: Temperature data collected by Maxim iButton thermochron loggers deployed in mussel and seaweed beds, relative to rock clearings, along the US west coast June to October 2012 and 2013, summarized as frequency of exceeding temperature thresholds, by habitat location, at local and regional scales.
DOI: 10.6084/m9.figshare.4728721
title: Data from: The hidden costs of living in a transformed habitat: ecological and evolutionary consequences in a tripartite mutualistic system with a keystone mistletoe

description: Original dataset from Fonturbel et al. (2019) The hidden costs of living in a transformed habitat: ecological versus evolutionary consequences on a tripartite mutualistic system with a keystone mistletoe, published in Science of the Total Environment 651: 2740-2748.
DOI: 10.6084/m9.figshare.4728727.v1
title: JurgensGaylord_DataFile1.xlsx

description: Temperature data collected by Maxim iButton thermochron loggers deployed in mussel and seaweed beds, relative to rock clearings, along the US west coast June to October 2012 and 2013, summarized as frequency of exceeding temperature thresholds, by habitat location, at local and regional scales.
DOI: 10.6084/m9.figshare.4728703
title: Sequence Metadata

description: GenBank accession numbers, hosts, sampling dates, and discretizations for the 299 sequences used in this study
DOI: 10.6084/m9.figshare.4728721.v2
title: Data from: The hidden costs of living in a transformed habitat: ecological and evolutionary consequences in a tripartite mutualistic system with a keystone mistletoe

description: Original dataset from Fonturbel et al. (2019) The hidden costs of living in a transformed habitat: ecological versus evolutionary consequences on a tripartite mutualistic system with a keystone mistletoe, published in Science of the Total Environment 651: 2740-2748.
DOI: 10.6084/m9.figshare.4728721.v1
title: Data from: The hidden costs of living in a transformed habitat: ecological and evolutionary consequences in a tripartite mutualistic system with a keystone mistletoe

description: Original dataset from Fonturbel et al. (2018) The hidden costs of living in a transformed habitat: ecological versus evolutionary consequences on a tripartite mutualistic system with a keystone mistletoe, published in Science of the Total Environment.<br>
DOI: 10.6084/m9.figshare.4728613
title: Narrow microtunnel technology for the isolation and precise identification of axonal communication among distinct hippocampal subregion networks

description: Communication between different sub regions of the hippocampus is fundamental tolearning and memory. However accurate knowledge about information transferbetween sub regions from access to the activity in individual axons is lacking. MEMSdevices with microtunnels connecting two sub networks have begun to approach thisproblem but the commonly used 10 μm wide tunnels frequently measure signals frommultiple axons. To reduce this complexity, we compared polydimethylsiloxane (PDMS)microtunnel devices each with a separate tunnel width of 2.5, 5 or 10 μm bridging twowells aligned over a multi electrode array (MEA). Primary rat neurons were grown inthe chambers with neurons from the dentate gyrus on one side and hippocampal CA3on the other. After 2-3 weeks of culture, spontaneous activity in the axons inside thetunnels was recorded. We report electrophysiological, exploratory data analysis forfeature clustering and visual evidence to support the expectation that 2.5 μm widetunnels have fewer axons per tunnel and therefore more clearly delineated signals than10 or 5 μm wide tunnels. Several measures indicated that fewer axons per electrodeenabled more accurate detection of spikes. A clustering analysis comparing thevariations of spike height and width for different tunnel widths revealed tighter clustersrepresenting unique spikes with less height and width variation when measured innarrow tunnels. Wider tunnels tended toward more diffuse clusters from a continuumof spike heights and widths. Standard deviations for multiple cluster measures, suchas Average Dissimilarity, Silhouette Value (S) and Separation Factor (averagedissimilarity/S value), support a conclusion that 2.5 μm wide tunnels containing feweraxons enable more precise determination of individual action potential peaks, theirpropagation direction, timing, and information transfer between sub networks.
DOI: 10.6084/m9.figshare.4728631
title: Mellott et al.PlosOne.DataFile.xlsx

description: Individual data points for each figure in <br>PLoS One. 2017 Jan 19;12(1):e0170450. doi: 10.1371/journal.pone.0170450. eCollection 2017.Perinatal Choline Supplementation Reduces Amyloidosis and Increases Choline Acetyltransferase Expression in the Hippocampus of the APPswePS1dE9 Alzheimer's Disease Model Mice.
DOI: 10.6084/m9.figshare.4728631.v1
title: Mellott et al.PlosOne.DataFile.xlsx

description: Individual data points for each figure in <br>PLoS One. 2017 Jan 19;12(1):e0170450. doi: 10.1371/journal.pone.0170450. eCollection 2017.Perinatal Choline Supplementation Reduces Amyloidosis and Increases Choline Acetyltransferase Expression in the Hippocampus of the APPswePS1dE9 Alzheimer's Disease Model Mice.
DOI: 10.6084/m9.figshare.4728406
title: Blanco et al Gomphonema.csv

description: Supplementary data for the paper "Disentangling diatom species complexes: does morphometry suffice?" by Blanco et al.
DOI: 10.6084/m9.figshare.4728613.v1
title: Narrow microtunnel technology for the isolation and precise identification of axonal communication among distinct hippocampal subregion networks

description: Communication between different sub regions of the hippocampus is fundamental tolearning and memory. However accurate knowledge about information transferbetween sub regions from access to the activity in individual axons is lacking. MEMSdevices with microtunnels connecting two sub networks have begun to approach thisproblem but the commonly used 10 μm wide tunnels frequently measure signals frommultiple axons. To reduce this complexity, we compared polydimethylsiloxane (PDMS)microtunnel devices each with a separate tunnel width of 2.5, 5 or 10 μm bridging twowells aligned over a multi electrode array (MEA). Primary rat neurons were grown inthe chambers with neurons from the dentate gyrus on one side and hippocampal CA3on the other. After 2-3 weeks of culture, spontaneous activity in the axons inside thetunnels was recorded. We report electrophysiological, exploratory data analysis forfeature clustering and visual evidence to support the expectation that 2.5 μm widetunnels have fewer axons per tunnel and therefore more clearly delineated signals than10 or 5 μm wide tunnels. Several measures indicated that fewer axons per electrodeenabled more accurate detection of spikes. A clustering analysis comparing thevariations of spike height and width for different tunnel widths revealed tighter clustersrepresenting unique spikes with less height and width variation when measured innarrow tunnels. Wider tunnels tended toward more diffuse clusters from a continuumof spike heights and widths. Standard deviations for multiple cluster measures, suchas Average Dissimilarity, Silhouette Value (S) and Separation Factor (averagedissimilarity/S value), support a conclusion that 2.5 μm wide tunnels containing feweraxons enable more precise determination of individual action potential peaks, theirpropagation direction, timing, and information transfer between sub networks.
DOI: 10.6084/m9.figshare.4726396
title: Use_of_Dental_Sealants_by_KP_Dentists.csv

description: Survey of dentists regarding usage of dental sealants.
DOI: 10.6084/m9.figshare.4728406.v1
title: Blanco et al Gomphonema.csv

description: Supplementary data for the paper "Disentangling diatom species complexes: does morphometry suffice?" by Blanco et al.
DOI: 10.6084/m9.figshare.4726246
title: BHA Average_networks

description: Average structural and functional networks from 12 controls to build BHA<br>
DOI: 10.6084/m9.figshare.4728577.v2
title: Classical Mechanics Examples

description: <i>Note: This application is currently designed to run on Windows and requires the 2016 LabVIEW runtime engine. It is available free to download in the references. </i><i><br></i><b>Brachistochrone</b>- An example of how a cycloid is the solution to the shortest path between two points in a particular potential.<b>2-D Membrane Modes-</b> The first few normal modes of a 2-D membrane.<b>Coupled Harmonic Oscillators-</b> Select up to 10 masses (and 11 springs) and examine their normal modes of oscillation ordered in ascending frequency with various spring constants.
DOI: 10.6084/m9.figshare.4726087
title: 14 - Exploring_ocean_specific_cassette_gene_homologs

description: n excel file with information on ocean specific gene homologs and predicted fucntion: KEGG annotation and blast result etc. <br>
DOI: 10.6084/m9.figshare.4726246.v1
title: BHA Average_networks

description: Average structural and functional networks from 12 controls to build BHA<br>
DOI: 10.6084/m9.figshare.4728577
title: Classical Mechanics Examples

description: <i>Note: This application is currently designed to run on Windows and requires the 2016 LabVIEW runtime engine. It is available free to download in the references. </i><i><br></i><b>Brachistochrone</b>- An example of how a cycloid is the solution to the shortest path between two points in a particular potential.<b>2-D Membrane Modes-</b> The first few normal modes of a 2-D membrane.<b>Coupled Harmonic Oscillators-</b> Select up to 10 masses (and 11 springs) and examine their normal modes of oscillation ordered in ascending frequency with various spring constants.
DOI: 10.17034/3d5b501b-907b-4e5f-a166-c1a404051560
title: Dataset for "Ultrafast critical ground state preparation via bang-bang protocols"

description: Code, notebooks, and data used to produce the results presented in: Luca Innocenti, Gabriele De Chiara, Mauro Paternostro, Ricardo Puebla (2020). "Ultrafast critical ground state preparation via bang-bang protocols"
DOI: 10.6084/m9.figshare.4726081
title: 12 - SingleCell_BATS_HOT_metadata

description: An excel file with metadata on the 115 single-cells used in this study (96 single-cells from BATS as described in Kashtan et al Science 2014, and the additional new 19 singel-cells from HOT)
DOI: 10.6084/m9.figshare.4726084
title: 13 - DenovoAssemblies_QUAST_ReportExcel.xlsx

description: QUAST report statistics of the denovo assemblies of the 19 Prochlorococcus partial genomes from HOT.
DOI: 10.6084/m9.figshare.4726081.v1
title: 12 - SingleCell_BATS_HOT_metadata

description: An excel file with metadata on the 115 single-cells used in this study (96 single-cells from BATS as described in Kashtan et al Science 2014, and the additional new 19 singel-cells from HOT)
DOI: 10.6084/m9.figshare.4728577.v3
title: Classical Mechanics Examples

description: <i>Note: This application is currently designed to run on Windows and requires the 2016 LabVIEW runtime engine. It is available free to download in the references. </i><i><br></i><b>Brachistochrone</b>- An example of how a cycloid is the solution to the shortest path between two points in a particular potential.<b>2-D Membrane Modes-</b> The first few normal modes of a 2-D membrane.<b>Coupled Harmonic Oscillators-</b> Select up to 10 masses (and 11 springs) and examine their normal modes of oscillation ordered in ascending frequency with various spring constants.
DOI: 10.6084/m9.figshare.4726072
title: 10 - BATS_HOT_ALL_WG_tree

description: Phyllogenetic tree (nwk format ) of the 115 single cells (as well as of 5 HLII strains) based on whole-genome sequences (the alignment in file 9:BATS_HOT_ALL_WG_algn.fasta).
DOI: 10.6084/m9.figshare.4726078
title: 11 - nc_COGS_all.fasta

description: Classification of genes into Clusters of Orthologous Genes (COGs).<br><br>Each entry is a gene (or partial gene sequence) in one of the 115 single cells denovo assembled genomes or in a genome of a cultured strains.<br><br>The number in the beginnig of each header is the COG ID.<br><br>The fatsa headers for genes in a single cell genome has the following format:<br>&gt;COG ID|MDA name|Detailed name|contig__|Start bp|End bp|+/- Strand|Method|Description<br>The fatsa headers for genes in a complete genome of a cultured strain has the following format:<br>&gt;COG ID|Short name|Detailed name|Start bp|End bp|+/- Strand|Method|
DOI: 10.6084/m9.figshare.4726066
title: 8 - C1_composite_genome.gbk

description: The composite genome that was used as a reference in the reference-guided assembly that yeilded the whole-genome multi-alignment<br>ITS_HOT_BATS_115_aligned.fasta.<br>The C1 composite genomes was built from overlapping large contigs of different single cells within the C1-cN2 clade. <br>
DOI: 10.6084/m9.figshare.4726078.v1
title: 11 - nc_COGS_all.fasta

description: Classification of genes into Clusters of Orthologous Genes (COGs).<br><br>Each entry is a gene (or partial gene sequence) in one of the 115 single cells denovo assembled genomes or in a genome of a cultured strains.<br><br>The number in the beginnig of each header is the COG ID.<br><br>The fatsa headers for genes in a single cell genome has the following format:<br>&gt;COG ID|MDA name|Detailed name|contig__|Start bp|End bp|+/- Strand|Method|Description<br>The fatsa headers for genes in a complete genome of a cultured strain has the following format:<br>&gt;COG ID|Short name|Detailed name|Start bp|End bp|+/- Strand|Method|
DOI: 10.6084/m9.figshare.4726087.v2
title: 14 - Exploring_ocean_specific_cassette_gene_homologs

description: n excel file with information on ocean specific gene homologs and predicted fucntion: KEGG annotation and blast result etc. <br>
DOI: 10.6084/m9.figshare.4726039
title: 7 - ITS_HOT_BATS_115_single_cells_tree.nwk

description: Phyllogenetic tree of the 115 single cells (as well as of 5 HLII strains) based on ITS sequences. as presented in Fig S3.<br>
DOI: 10.6084/m9.figshare.4726042
title: 9 - BATS_HOT_ALL_WG_algn.fasta

description: Reference-guide assembly of the partial genomes of the 115 single cells in the study. The reference genome used is C1_composite_genome (file no. 8 above).<br>This data was used to generate the whole-genome tree in Fig 3.
DOI: 10.6084/m9.figshare.4726087.v1
title: 14 - Exploring_ocean_specific_cassette_gene_homologs.xlsx

description: n excel file with information on ocean specific gene homologs and predicted fucntion: KEGG annotation and blast result etc. <br>
DOI: 10.6084/m9.figshare.4726066.v1
title: 8 - C1_composite_genome.gbk

description: The composite genome that was used as a reference in the reference-guided assembly that yeilded the whole-genome multi-alignment<br>ITS_HOT_BATS_115_aligned.fasta.<br>The C1 composite genomes was built from overlapping large contigs of different single cells within the C1-cN2 clade. <br>