cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17100525
title: Table 1 in New Hyphessobrycon from the upper rio Pardo drainage in eastern Brazil (Teleostei: Characiformes: Characidae)

description: Table 1. Morphometric data of holotype (MCP 40916) and paratypes (MCP 40141; MZUSP 94439) of Hyphessobrycon vinaceus from the upper rio Pardo drainage (n = 10 including the holotype). SD = standard deviation.
HolotypeRangeMeanSDStandard length (mm)56.546.7-62.855.0-Percents of standard lengthPredorsal distance50.050.0-55.852.61.55Prepelvic distance47.246.9-49.948.31.12Prepectoral distance24.624.2-26.525.40.77Preanal distance65.265.2-69.467.01.45Depth at dorsal-fin origin31.430.1-35.832.11.82Caudal peduncle depth12.811.4-13.512.80.60Caudal peduncle length16.414.9-17.415.90.74Anal-fin base22.820.7-25.122.21.39Dorsal-fin length22.922.4-24.223.20.56Pelvic-fin length16.215.1-17.116.30.63Pectoral-fin length19.718.9-21.720.00.85Head length24.123.9-26.725.21.04Percents of head lengthSnout length23.821.1-25.823.81.37Upper jaw length41.339.6-47.243.32.47Orbital diameter27.524.2-31.427.92.05Interorbital width34.832.1-36.734.71.21
description: Published as part of Bertaco, Vinicius A., Malabarba, Luiz R. & Dergam, Jorge A., 2007, New Hyphessobrycon from the upper rio Pardo drainage in eastern Brazil (Teleostei: Characiformes: Characidae), pp. 247 in Neotropical Ichthyology 5 (3) on page 247, DOI: 10.1590/S1679-62252007000300003, http://zenodo.org/record/17100496
DOI: 10.5281/zenodo.17100526
title: Table 1 in New Hyphessobrycon from the upper rio Pardo drainage in eastern Brazil (Teleostei: Characiformes: Characidae)

description: Table 1. Morphometric data of holotype (MCP 40916) and paratypes (MCP 40141; MZUSP 94439) of Hyphessobrycon vinaceus from the upper rio Pardo drainage (n = 10 including the holotype). SD = standard deviation.
HolotypeRangeMeanSDStandard length (mm)56.546.7-62.855.0-Percents of standard lengthPredorsal distance50.050.0-55.852.61.55Prepelvic distance47.246.9-49.948.31.12Prepectoral distance24.624.2-26.525.40.77Preanal distance65.265.2-69.467.01.45Depth at dorsal-fin origin31.430.1-35.832.11.82Caudal peduncle depth12.811.4-13.512.80.60Caudal peduncle length16.414.9-17.415.90.74Anal-fin base22.820.7-25.122.21.39Dorsal-fin length22.922.4-24.223.20.56Pelvic-fin length16.215.1-17.116.30.63Pectoral-fin length19.718.9-21.720.00.85Head length24.123.9-26.725.21.04Percents of head lengthSnout length23.821.1-25.823.81.37Upper jaw length41.339.6-47.243.32.47Orbital diameter27.524.2-31.427.92.05Interorbital width34.832.1-36.734.71.21
description: Published as part of Bertaco, Vinicius A., Malabarba, Luiz R. & Dergam, Jorge A., 2007, New Hyphessobrycon from the upper rio Pardo drainage in eastern Brazil (Teleostei: Characiformes: Characidae), pp. 247 in Neotropical Ichthyology 5 (3) on page 247, DOI: 10.1590/S1679-62252007000300003, http://zenodo.org/record/17100496
DOI: 10.48539/hbm785.cgsg.458
title: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Blood/Pelvis, v1.3

description: [Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables](https://humanatlas.io/asctb-tables) aim to<br>capture the nested *part_of* structure of anatomical human body parts, the typology of cells, and biomarkers used to<br>identify cell types. The tables are authored and reviewed by an international team of experts.
DOI: 10.48539/hbm693.ngdl.755
title: Musculoskeletal Crosswalk, v1.1

description: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables (https://humanatlas.io/asctb-tables) aim to capture<br>anatomical human body parts, the typology of cells, and biomarkers used to identify cell types. The tables are<br>authored and reviewed by an international team of experts. This table describes relationships between anatomical<br>structures in the muscular system and skeleton ASCT+B tables. This includes (1) bone “adjacent_to” bone crosswalks and<br>(2) muscle “attached_to” bone, ligament, tendon, fascia, or skin crosswalks. The bone “adjacent_to” relationships may<br>indicate a joint and joining structures. The “attached_to” relationships have a “Relationship2” value of<br>“has_muscle_origin” or “has_muscle_insertion”. The focus of this initial version of this crosswalk table is the upper<br>extremities, but it will be expanded in the future to other parts of the body.
DOI: 10.15468/dl.vxt5y5
title: Occurrence Download

description: A dataset containing 681778 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is FRA.1_1",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (28eb1a3f-1c15-4a95-931a-4af90ecb574d, c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f)"
 ]
}

 The dataset includes 681778 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053547-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7a6u6
title: Occurrence Download

description: A dataset containing 172321 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melica uniflora"
 ]
}

 The dataset includes 172321 records from 1375 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053482-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yjkmz6
title: Occurrence Download

description: A dataset containing 3687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is Melastomataceae"
 ]
}

 The dataset includes 3687 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053583-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48539/hbm477.rwsm.936
title: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Brain, v1.1

description: [Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables](https://humanatlas.io/asctb-tables) aim to<br>capture the nested *part_of* structure of anatomical human body parts, the typology of cells, and biomarkers used to<br>identify cell types. The tables are authored and reviewed by an international team of experts.
DOI: 10.48539/hbm994.kxqs.423
title: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Uterus, v1.2

description: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables (https://humanatlas.io/asctb-tables) aim to capture<br>the nested uterus structure of anatomical human body parts, the typology of cells, and biomarkers used to identify<br>cell types. The tables are authored and reviewed by an international team of experts. The Uterus ASCT+B table provides<br>a comprehensive mapping of the anatomical structures, cell types, and biomarkers specific to the human uterus. This<br>table includes detailed hierarchical relationships among uterine anatomical structures, associated cell types, and<br>their corresponding biomarkers. It serves as a valuable resource for understanding the cellular composition and<br>molecular characteristics of the uterus within the human reference atlas. A description of this Uterus ASCT+B table<br>can be found in ""Anatomical Structures, Cell Types, and Biomarkers Tables Plus 3D Reference Organs in Support of a<br>Human Reference Atlas"" by Börner et al. 2021. The database and code used to generate the more simplified view of the<br>Uterus in these ASCT+B tables may be found here:<br>(https://github.com/hubmapconsortium/hra-vccf). <br><br>**Bibliography:** <br><br>* Börner, Katy, Sarah A. Teichmann, Ellen M. Quardokus, James C. Gee, Kristen Browne, David Osumi-Sutherland, Bruce W. Herr II, et al. 2021. “Anatomical Structures, Cell Types and Biomarkers of the Human Reference Atlas.” *Nature Cell Biology* 23 (11): 1117–28. https://doi.org/10.1038/s41556-021-00788-6.
DOI: 10.5517/ccdc.csd.cc2k9nwf
title: CCDC 2362785: Experimental Crystal Structure Determination

description: Related Article: Qingxia Zhao, Haojie Ge, Huimin Jin, Lingfeng Chen, Guang Liang, Patrick J. Walsh, Jie Li|2025|J.Org.Chem.|90|11852|doi:10.1021/acs.joc.5c01270
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lfbw8
title: CCDC 2396110: Experimental Crystal Structure Determination

description: Related Article: Vera V. Khrizanforova, Robert R. Fayzullin, Ruslan B. Zaripov, Tatiana P. Gerasimova, Vladimir I. Morozov, Evgeniya B. Krasovskaya, Yulia H. Budnikova|2025|ChemCatChem|17|e00078|doi:10.1002/cctc.202500078
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lfbyb
title: CCDC 2396112: Experimental Crystal Structure Determination

description: Related Article: Vera V. Khrizanforova, Robert R. Fayzullin, Ruslan B. Zaripov, Tatiana P. Gerasimova, Vladimir I. Morozov, Evgeniya B. Krasovskaya, Yulia H. Budnikova|2025|ChemCatChem|17|e00078|doi:10.1002/cctc.202500078
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lfbzc
title: CCDC 2396113: Experimental Crystal Structure Determination

description: Related Article: Vera V. Khrizanforova, Robert R. Fayzullin, Ruslan B. Zaripov, Tatiana P. Gerasimova, Vladimir I. Morozov, Evgeniya B. Krasovskaya, Yulia H. Budnikova|2025|ChemCatChem|17|e00078|doi:10.1002/cctc.202500078
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lp0s3
title: CCDC 2403485: Experimental Crystal Structure Determination

description: Related Article: Nai-Te Yao, Yun-Jia Shen, Yang Wu, Meng Qiu, Yang Yang, Yi-Ling Shang, Ye Zhang, Han-Yuan Gong|2025|Org.Lett.|27|9253|doi:10.1021/acs.orglett.5c02806
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lp0w6
title: CCDC 2403488: Experimental Crystal Structure Determination

description: Related Article: Nai-Te Yao, Yun-Jia Shen, Yang Wu, Meng Qiu, Yang Yang, Yi-Ling Shang, Ye Zhang, Han-Yuan Gong|2025|Org.Lett.|27|9253|doi:10.1021/acs.orglett.5c02806
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.48539/hbm565.dvkx.367
title: Anatomical Structures, Cell Types and Biomarkers (ASCT+B) Tables to 2D Functional Tissue Unit (FTU) Reference Object Library Crosswalk, v1.2

description: This lookup table maps [Anatomical Structures, Cell Types and Biomarkers (ASCT+B)<br>Table](https://humanatlas.io/asctb-tables) terms to anatomical structure and cell type terms used in the<br>[CCF-2D-reference-object-library](https://humanatlas.io/2d-ftu-illustrations).
DOI: 10.48539/hbm783.tqtd.539
title: OMAP-2 Organ Mapping Antibody Panel (OMAP) for Multiplexed Antibody-Based Imaging of Human Intestines with CODEX, v1.2

description: OMAP-2 was designed for CODEX (CO Detection by IndEXing) imaging of fresh frozen human intestine<br>(https://doi.org/10.1038/s41596-021-00556-8, https://doi.org/10.1002/eji.202048891). The panel contains 54 antibodies<br>and the nuclear marker Hoechst for image alignment and nuclear segmentation. This panel provides spatial context for<br>all anatomical structures and most cell types present in the [ASCT+B intestine<br>table,v1.1](https://doi.org/10.48539/HBM325.NZPB.589). However, this panel does not include a marker for tuft cells, M<br>cells, and subsets of major cell types that are known to be present in the intestine (e.g., neuroendocrine cell<br>lineages, distinctions between alpha/beta and gamma/delta T cells, and IgA+ plasma cells). In general the panel was<br>aimed to provide a broad representation of cell types found in the intestine spanning stromal, immune, and epithelial<br>origins and could be used across disease settings of the intestine. Data from this panel has been analyzed as<br>described previously (https://doi.org/10.3389/fimmu.2021.727626, https://doi.org/10.1101/2021.11.25.469203). All<br>antibodies are custom conjugated in house with oligonucleotide barcodes (no lot number available) and run using CODEX<br>imaging per previous protocols (https://doi.org/10.1038/s41596-021-00556-8). Representative datasets using this OMAP<br>can be found here: https://doi.org/10.5061/dryad.76hdr7t1p; https://doi.org/10.5061/dryad.gmsbcc2sq.
DOI: 10.48539/hbm546.ckgw.888
title: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Urinary Bladder, v1.0

description: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables (https://humanatlas.io/asctb-tables) aim to capture<br>the nested urinary-bladder structure of anatomical human body parts, the typology of cells, and biomarkers used to<br>identify cell types. The tables are authored and reviewed by an international team of experts. The Urinary Bladder<br>ASCT+B table v1.0 provides a comprehensive mapping of the anatomical structures, cell types, and biomarkers specific<br>to the human urinary bladder. This table includes detailed hierarchical relationships among bladder anatomical<br>structures, associated cell types, and their corresponding biomarkers. It serves as a valuable resource for<br>understanding the cellular composition and molecular characteristics of the urinary bladder within the human reference<br>atlas. A description of this Urinary Bladder ASCT+B table can be found in ""Anatomical Structures, Cell Types, and<br>Biomarkers Tables Plus 3D Reference Organs in Support of a Human Reference Atlas"" by Börner et al. 2021. The database<br>and code used to generate the more simplified view of the Urinary Bladder in these ASCT+B tables may be found here:<br>(https://github.com/hubmapconsortium/hra-vccf). <br><br>**Bibliography:** <br><br>* Börner, Katy, Sarah A. Teichmann, Ellen M. Quardokus, James C. Gee, Kristen Browne, David Osumi-Sutherland, Bruce W. Herr II, et al. 2021. “Anatomical Structures, Cell Types and Biomarkers of the Human Reference Atlas.” *Nature Cell Biology* 23 (11): 1117–28. https://doi.org/10.1038/s41556-021-00788-6.
DOI: 10.48539/hbm636.mxkp.682
title: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Kidney, v1.4

description: [Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables](https://humanatlas.io/asctb-tables) aim to<br>capture the nested *part_of* structure of anatomical human body parts, the typology of cells, and biomarkers used to<br>identify cell types. The tables are authored and reviewed by an international team of experts. The kidney ASCT+B<br>tables are generated from a variety of publicly available human kidney datasets and from data generated by HuBMAP and<br>KPMP consortia. Most of the markers listed are observed in more than one study or orthogonally validated. Note that<br>these are predicted markers and a single marker to annotate a cell type is not likely sufficient or specific.<br>Therefore, these are just a guide, more accurate annotation should be done using the entire set of enriched genes in a<br>cluster. The cell types shown here are at much higher granularity, although general markers for many of the<br>structures are also shown. There is a tradeoff in uncertainty of cell type annotation with higher granularity and as<br>spatial validation approaches become more robust we will be accordingly revising these.
DOI: 10.48539/hbm693.rtrn.866
title: 3D Reference Organ for Kidney, Male, Right, v1.0

description: [This reference organ](https://humanatlas.io/3d-reference-library) was created using data from the Visible Human Male,<br>provided by the National Library of Medicine.
DOI: 10.48539/hbm723.kfrp.582
title: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Heart, v1.3

description: [Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables](https://humanatlas.io/asctb-tables) aim to<br>capture the nested *part_of* structure of anatomical human body parts, the typology of cells, and biomarkers used to<br>identify cell types. The tables are authored and reviewed by an international team of experts.
DOI: 10.5285/5a74b5aa-ebe2-4079-a870-7f6c34e6ac3d
title: Predictive Seabed Sediments UK v1

description: The BGS Predictive Seabed Sediments UK v1 dataset includes digital maps of seabed sediment (SBS) composition across the UK Continental Shelf (UKCS). The dataset includes one classified SBS map (Folk sediment class; vector), and three percentage-sediment maps (rasters) giving the proportions of gravel, sand, and mud.
The dataset is generated using a machine learning algorithm known as a Distributional Random Forest (DRF). The model uses input data to predictively classify what seabed sediments are most likely to be the dominant sediment present. It does so, using more than 38,000 seabed sediment samples (collated from various sources) with measurements of the proportion of mud, sand and gravel from locations across the study area. The predictions are constrained against covariate variables that are known to influence which sediment is most likely to occur. These include bathymetry data morphometric derivatives (at multiple spatial scales), as well as hydrodynamic data layers (currents and tidal).
The dataset was reviewed via a qualitative assessment (QA) protocol by subject-area experts (e.g. contrasting with previous mapping, and local examples of higher-resolution data and mapping), and following methodological improvements based on this feedback, updated SBS map products were prepared. 
The dataset is presented at a national-scale, with a spatial resolution of approximately 110m, covering the UKCS (slightly modified UKCS area based on data availability).
DOI: 10.15468/dl.xxkb4n
title: Occurrence Download

description: A dataset containing 400 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Fejervarya multistriata",
 "Year 2000-2025"
 ]
}

 The dataset includes 400 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053589-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48539/hbm323.sgdf.945
title: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Lung, v1.1

description: [Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables](https://humanatlas.io/asctb-tables) aim to<br>capture the nested *part_of* structure of anatomical human body parts, the typology of cells, and biomarkers used to<br>identify cell types. The tables are authored and reviewed by an international team of experts.
DOI: 10.15468/dl.u38y7m
title: Occurrence Download

description: A dataset containing 1178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malpighia emarginata",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1178 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053587-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jqbf63
title: Occurrence Download

description: A dataset containing 14301 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Icterus bullockii (Swainson, 1827)"
 ]
}

 The dataset includes 14301 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188272-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.duh7km
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceratozamia zoquorum Pérez-Farr., Vovides & Iglesias"
 ]
}

 The dataset includes 62 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146037-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6pf4km
title: Occurrence Download

description: A dataset containing 296 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galium poiretianum Ball"
 ]
}

 The dataset includes 296 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012991-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2la4kp
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "TaxonKey is Cedrela odorata L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 115 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031995-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a5qub4
title: Occurrence Download

description: A dataset containing 20367 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Icteria virens (Linnaeus, 1758)"
 ]
}

 The dataset includes 20367 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188270-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hgwzmu
title: Occurrence Download

description: A dataset containing 1173 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ficus trichopoda Baker"
 ]
}

 The dataset includes 1173 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012990-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.