cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14984075
title: Applications of the Third-Generation DNA Sequencing Technology to the Detection of Hop Tolerance Genes and Discrimination of <i>Saccharomyces</i> Yeast Strains

description: To expand the applicability of the third-generation DNA sequencing technologies for the brewing industry, the new experimental protocols for quality control (QC) brewery laboratories have been developed, using the MinION system. Firstly, the hop tolerance genes, <i>horA</i> and <i>horC</i>, were amplified with multiplex PCR, and the PCR amplicons were sequenced by the MinION system. As a result, all of the beer spoilage lactic acid bacteria (LAB) strains carrying <i>horA</i> and/or <i>horC</i> were positively identified. Secondly, <i>STA1</i>, <i>SbKEX2</i> and <i>GEX1</i>, were evaluated as diagnostic marker genes (DMGs) for discriminating <i>Saccharomyces cerevisiae</i> and <i>S. pastorianus</i> strains that possess essentially indistinguishable nucleotide sequences of the rDNA and internal transcribed spacer (ITS) regions. As a consequence of multiplex PCR specific to <i>STA1</i>, <i>SbKEX2</i> and <i>GEX1</i>, these DMGs were shown to separate these hard-to-discriminate strains into four groups, namely top-fermenting ale yeast strains (<i>S. cerevisiae</i>), bottom-fermenting lager yeast strains (<i>S. pastorianus</i>), non-brewing <i>S. cerevisiae</i> wild yeast strains, and <i>S. cerevisiae</i> var. <i>diastaticus</i>. This study also demonstrated that the multiplexed PCR amplicons are independently recognized and correctly identified by the MinION system. Taken together, the newly developed methods using the MinION system are applicable to the identification and discrimination of important brewery microorganisms for microbiological QC. It was also shown that the concurrent applications of the rDNA-sequencing-based species identification and DMG approaches by the MinION system are useful for the breweries that now manufacture both traditional beers and non-traditional beverages. Supplemental data for this article is available online at https://doi.org/10.1080/03610470.2021.1939606 .
DOI: 10.6084/m9.figshare.14984075.v1
title: Applications of the Third-Generation DNA Sequencing Technology to the Detection of Hop Tolerance Genes and Discrimination of <i>Saccharomyces</i> Yeast Strains

description: To expand the applicability of the third-generation DNA sequencing technologies for the brewing industry, the new experimental protocols for quality control (QC) brewery laboratories have been developed, using the MinION system. Firstly, the hop tolerance genes, <i>horA</i> and <i>horC</i>, were amplified with multiplex PCR, and the PCR amplicons were sequenced by the MinION system. As a result, all of the beer spoilage lactic acid bacteria (LAB) strains carrying <i>horA</i> and/or <i>horC</i> were positively identified. Secondly, <i>STA1</i>, <i>SbKEX2</i> and <i>GEX1</i>, were evaluated as diagnostic marker genes (DMGs) for discriminating <i>Saccharomyces cerevisiae</i> and <i>S. pastorianus</i> strains that possess essentially indistinguishable nucleotide sequences of the rDNA and internal transcribed spacer (ITS) regions. As a consequence of multiplex PCR specific to <i>STA1</i>, <i>SbKEX2</i> and <i>GEX1</i>, these DMGs were shown to separate these hard-to-discriminate strains into four groups, namely top-fermenting ale yeast strains (<i>S. cerevisiae</i>), bottom-fermenting lager yeast strains (<i>S. pastorianus</i>), non-brewing <i>S. cerevisiae</i> wild yeast strains, and <i>S. cerevisiae</i> var. <i>diastaticus</i>. This study also demonstrated that the multiplexed PCR amplicons are independently recognized and correctly identified by the MinION system. Taken together, the newly developed methods using the MinION system are applicable to the identification and discrimination of important brewery microorganisms for microbiological QC. It was also shown that the concurrent applications of the rDNA-sequencing-based species identification and DMG approaches by the MinION system are useful for the breweries that now manufacture both traditional beers and non-traditional beverages. Supplemental data for this article is available online at https://doi.org/10.1080/03610470.2021.1939606 .
DOI: 10.7916/d8-v49y-ef51
title:  A coupled mode of cloud, atmospheric circulation, and sea ice controlled by wave-3 pattern in Antarctic winter: Data

description: This study examines coupled relationships among clouds, atmospheric circulation, and sea ice in Antarctic winter. We find that the wave-3 pattern dominates the leading co-variability mode among cloud, atmospheric circulation, and sea ice. In the mid-troposphere, the pressure, meridional wind, and clouds form a coupled wave-3 pattern. Both horizontal transport and vertical motion contribute to cloud formation, resulting in maximum cloud anomalies spatially between maximum meridional wind and pressure anomalies. The radiative effect of the cloud pattern can generate 12-cm sea ice anomalies in one month in the Amundsen Sea. It also strengthens the sea ice anomalies that are directly induced by low-level atmospheric circulation anomalies. In contrast, the radiative forcing of anomalous clouds in the lower troposphere is suppressed by the dynamic and thermodynamic effects of the circulation anomalies. These discoveries provide a better understanding of Antarctica’s interactive processes, and also offer physical evidence for climate model validations.
DOI: 10.5281/zenodo.4737501
title: Order and disorder – an integrative structure of the full-length human growth hormone receptor -- MD Trajectories

description: Trajectories and initial coordinate files for the MD simulations reported in the associated manuscript "Order and disorder – an integrative structure of the full-length human growth hormone receptor" by Kassem and Araya-Secchi et al. Other related input files available at: https://github.com/Niels-Bohr-Institute-XNS-StructBiophys/GHRModel
DOI: 10.5281/zenodo.4737500
title: Order and disorder – an integrative structure of the full-length human growth hormone receptor -- MD Trajectories

description: Trajectories and initial coordinate files for the MD simulations reported in the associated manuscript "Order and disorder – an integrative structure of the full-length human growth hormone receptor" by Kassem and Araya-Secchi et al. Other related input files available at: https://github.com/Niels-Bohr-Institute-XNS-StructBiophys/GHRModel
DOI: 10.25625/z9ezht/40ancr
title: Azhar et al_Coleoptera.Diptera.Hemiptera.Lepidoptera_Abundances_2013-14.tab

description: :unav
DOI: 10.25625/z9ezht
title: Azhar et al_Coleoptera.Diptera.Hemiptera.Lepidoptera_Abundances_2013-14

description: Abundances of potential hosts of parasitoid wasps in 32 EFForTS study sites, collected in Dry Season and Rainy Season 2013/14 Potential hosts are: Coleoptera (adults), Diptera (adults), Hemiptera (adults), Lepidoptera (adults+larvae)
DOI: 10.6084/m9.figshare.19514239
title: Dataset 2.xlsx

description: The genetic map information in this study
DOI: 10.6084/m9.figshare.19514239.v1
title: Dataset 2.xlsx

description: The genetic map information in this study
DOI: 10.6084/m9.figshare.19514248
title: Dataset 3.xlsx

description: Data of kernel traits of BLE18 in three environments
DOI: 10.17632/bj3gygvh5d.1
title: Garcovich et al, Dermatol Ther 2021

description: An IgM  modified ELISA based on collagen VII
DOI: 10.17632/bw4v6y37v2.1
title: Gasparini et al Eu J Dermatol 2021

description: Western blot (raw data) on laminin 332. Two MMP patients react with laminin 332.
DOI: 10.17632/33yh9jbk7v.1
title: Senatore et al, Int J Dermatol 2021

description: Western blot on laminin 421 with a serum from a pemphigoid patient (raw data)
DOI: 10.17632/hwnf4zn4tf.1
title: La construcción material de la montaña mendocina en el campo arquitectónico e ingenieril (1890-1930):  Prácticas y saberes extranjeros 

description: La consolidación del Estado moderno en la Argentina, implicó la aparición de nuevos temas y programas en la disciplina arquitectónica e ingenieril. Sumado a ello, la modernización tecnológica operante desde la llegada del ferrocarril, significó la incorporación de nuevas tecnologías y materiales que, de la mano de inmigrantes (en su mayoría europeos) llegados al país en un contexto favorable que apoyaba su arraigo, revolucionó la construcción material y simbólica del espacio. En Mendoza, esta revolución se tradujo en la incorporación del espacio montañés al esquema productivo que, hasta ese momento, se había orientado predominantemente a la actividad agro-ganadera y agrícola para exportación. En este marco, el artículo problematiza el modo en que la “nueva” mirada de la cordillera cristalizó en la implantación de equipamientos e infraestructuras: centrales hidroeléctricas, hoteles y plantas potabilizadoras; elementos vinculados en el vasto territorio por la línea férrea en los primeros tiempos y luego por la traza caminera. La búsqueda se orienta a la expresión material y tecnológica de estos elementos, tanto desde el accionar de técnicos y profesionales extranjeros que se desempeñaron en las obras, como de empresas de mayor envergadura que operaron sobre el territorio, impactándolo con tecnologías, saberes y prácticas novedosas. Para ello, el estudio se nutre del modelo narrativo histórico, del análisis fotográfico y del análisis de contenido de documentos históricos.
DOI: 10.17632/rpdr4pcj36.1
title: Structural problems of Latin American cities 450 years after Caracas’ foundation

description: Latin American cities face many problems that compromise them from different angles such as lack of infrastructure, government fragmentation, and environmental degradation. At the same time, each city tries to come up with its own solutions, but there are so many difficulties that in many cases it is difficult to keep attention and efforts focused on all these directions. For these reasons, this research aims to define some of the most common problems faced by cities in Latin America. Disseminating these similarities could help to face those problems, since, if local governments recognize that they face the same situations as their neighbors, they could organize themselves to study them and find solutions. To achieve these objectives, this research reviewed the diagnoses made by hundreds of Best Practice proposals collected in the libraries of UN Habitat and the Dubai International Award for Best Practices. Based on these results, this research built a proposal for the contest "Participatory Projects in Public Space Contest" organized in commemoration of the 450 years of Caracas. This proposal served as a case study where some of these cross-cutting problems in the region were explored. At the same time, the contest served as a framework to make these results public and promote discussion on some of these important issues. Finally, this research links different stages and synthesizes some important efforts that are intended to serve as a reference framework to better understand serious and everyday problems that are manifested in Latin American cities.
DOI: 10.17632/t2yh9r2323.1
title: Una aproximación a la arquitectura de Richard Neutra desde su empatía con el usuario en el proceso de proyecto

description: El artículo presenta una aproximación a la obra del arquitecto Richard Neutra analizando y poniendo en valor la empatía con el usuario, así como las acciones realizadas durante el proceso de proyecto orientadas a conocer y satisfacer las necesidades del mismo. Aunque en el campo del diseño es habitual contar con técnicas de empatía que se trabajan de manera consciente, en arquitectura se ha venido haciendo de una manera más subconsciente. Debido a ello la exploración sobre el usuario ha quedado implícitamente integrada y, por tanto, diluida en una investigación inicial más amplia, vinculada a garantizar la funcionalidad del programa. La obra de Richard Neutra se presenta como adecuada para realizar este estudio, por el foco constante que el arquitecto pone en buscar el bienestar de las personas a través de los espacios habitados que diseña. La investigación se estructura en tres partes diferenciadas: la atención hacia las dimensiones fisiológica y psicológica de la persona; el análisis de la relación que se establece entre la persona y la naturaleza a través de su arquitectura; y la presentación de ejemplos específicos de técnicas aplicadas por el arquitecto para conocer al usuario, su estructura familiar y sus necesidades. A través de los casos estudiados y con apoyo de feedback específico de algunos de sus clientes, se confirma la fuerte orientación hacia el usuario en la arquitectura de Neutra, buscando garantizar su bienestar físico y emocional a través de la configuración de los espacios, así como la expansión del ser mediante la conexión con la naturaleza. Un arquitecto adelantado a su tiempo, que construye un fuerte vínculo empático con sus usuarios y aplica una serie de técnicas de empatía que tendrán un largo desarrollo posterior dentro de lo que hoy se conoce como Design Thinking.
DOI: 10.6084/m9.figshare.19514254
title: Dataset 4.xlsx

description: Data of kernel traits of BLSM3 in three environments
DOI: 10.6084/m9.figshare.19514254.v1
title: Dataset 4.xlsx

description: Data of kernel traits of BLSM3 in three environments
DOI: 10.17632/ghx7rv2b7k.1
title: Supplementary table S3. Antibiogram of Enterobacterales isolated from ready-to-eat Street food of Ambato, Ecuador

description: Antibiogram of Enterobacterales isolated from ready-to-eat Street food of Ambato, Ecuador
DOI: 10.17632/pjr2sh7t42.1
title: Supplementary table S4. Primers used in this study and PCR conditions.

description: Primers used in this study and PCR conditions.
DOI: 10.17632/46r5hp87y6.1
title: Supplementary table S5. Antibiotic resistance genes and virulence genes harbored by Enterobacterales isolates from ready-to-eat street food in Ecuador.

description: Antibiotic resistance genes and virulence genes harbored by Enterobacterales isolates from ready-to-eat street food in Ecuador.
DOI: 10.17632/grzsgk8k3v.1
title: Dataset HR_ST

description: The dataset comprises the data used for the investigation of the impacts of four different management styles, namely democratic, autocratic, paternalistic and Laissez Faire management styles on psychological, emotional, social well-beings of employees from services industry. The data was collected using online questionnaire survey that assessed democratic management style (3 items), autocratic management style (4 items), paternalistic management style (2 items), Laissez Faire management style (3 items), psychological well-being (4 items), emotional well-being (3 items) and social well-being (4 items). The questionnaire was distributed from September 2020 to October 2020 and a total of 889 responses were collected from two services firms. The respondents were selected based on purposive sampling technique. Descriptive and inferential statistics were utilized to analyze the data collected.
DOI: 10.17632/z6s88ymm25.1
title: Lack of ethylene does not affect reproductive success and synergid cell death in Arabidopsis

description: 
The signaling pathway of the gaseous hormone ethylene is involved in plant reproduction, growth, devel- opment, and stress responses. During reproduction, the two synergid cells of the angiosperm female gametophyte both undergo programmed cell death (PCD)/degeneration but in a different manner: PCD/ degeneration of one synergid facilitates pollen tube rupture and thereby the release of sperm cells, while PCD/degeneration of the other synergid blocks supernumerary pollen tubes. Ethylene signaling was postu- lated to participate in some of the synergid cell functions, such as pollen tube attraction and the induction of PCD/degeneration. However, ethylene-mediated induction of synergid PCD/degeneration and the role of ethylene itself have not been firmly established. Here, we employed the CRISPR/Cas9 technology to knock out the five ethylene-biosynthesis 1-aminocyclopropane-1-carboxylic acid oxidase (ACO) genes and created Arabidopsis mutants free of ethylene production. The ethylene-free mutant plants showed normal triple responses when treated with ethylene rather than 1-aminocyclopropane-1-carboxylic acid, but had increased lateral root density and enlarged petal sizes, which are typical phenotypes of mutants defective in ethylene signaling. Using these ethylene-free plants, we further demonstrated that production of ethylene is not necessarily required to trigger PCD/degeneration of the two synergid cells, but certain com- ponents of ethylene signaling including transcription factors ETHYLENE-INSENSITIVE 3 (EIN3) and EIN3- LIKE 1 (EIL1) are necessary for the death of the persistent synergid cell.
DOI: 10.17632/569ppjpyj4.1
title: Impact of agency conflict between shareholders and management on overinvestment in Russian companies depending on their ownership structure, Masters paper

description: Dataset for empirical part of masters paper
DOI: 10.17632/fzjrrjxcb8.1
title: LINF_250019000

description: NPL4
Leishmania infantum (strain JPCM5)
DOI: 10.17632/83tynj2x8z.2
title: Dataset Of High-Throughput Ligand Screening Against the RNA Packaging Signals Regulating Hepatitis B Virus Nucleocapsid Formation

description: Raw data and average/SEM calculations for the article entitled: "Dataset Of High-Throughput Ligand Screening Against the RNA Packaging Signals Regulating Hepatitis B Virus Nucleocapsid Formation"
DOI: 10.17632/dt64wtvt4j.1
title: Desvelando a cidade noturna pela paisagem, contribuições para a discussão da biodiversidade noturna

description: Este artigo se dedica ao estudo da noite, esta outra face da cidade. Quando inter-relacionamos noite e cidade, a definição do noturno se abre em uma diversidade de valores, interpretações e questões. Os sinais do céu noturno traduzidos em formas de linguagem, demonstram como as relações entre o céu e a Terra fizeram parte da nossa construção cultural, mas hoje estas relações são distantes da sociedade contemporânea urbana, como se a noite fosse uma paisagem esquecida, invisibilizada ou até residual. A paisagem ao anoitecer também abriga uma natureza noturna, muitas vezes invisível aos nossos olhos, seja pelas suas próprias características, mas também por nossa falta de compreensão e conhecimento. Isto se reflete na ausência desta dinâmica no planejamento e projeto das cidades, demonstrando lacunas que precisam ser discutidas frente às transformações de valores ambientais e à própria questão ambiental que se impõem como um desafio da metrópole. Desta forma, este artigo visa explicitar - dentre as múltiplas facetas da cidade noturna - a dimensão ambiental que a noite contém, como forma de impulsionar um debate crítico sobre estas discussões na cidade contemporânea. Ao desviar de um olhar predominantemente antropocêntrico para a noite das cidades, buscamos formas de abordagem da cidade noturna, que possam alinhar as dinâmicas da biodiversidade noturna urbana.
DOI: 10.17632/hy2vkn2v7z.2
title: Experimental characterization and modelling of bisphenol-a type epoxy polymer in high strain rates and low temperatures

description: Raw Data for the paper 'Experimental characterization and modelling of bisphenol-a type epoxy polymer in high strain rates and low temperatures'
DOI: 10.5517/ccdc.csd.cc2bfz70
title: CCDC 2158382: Experimental Crystal Structure Determination

description: Related Article: Monika Haberecht, Michael Bolte, Matthias Wagner|2022|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2bg140
title: CCDC 2158441: Experimental Crystal Structure Determination

description: Related Article: Thorsten Morawitz, Michael Bolte, Matthias Wagner|2022|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2bg184
title: CCDC 2158445: Experimental Crystal Structure Determination

description: Related Article: David Eckensberger, Michael Bolte, Matthias Wagner|2022|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2bg1b6
title: CCDC 2158447: Experimental Crystal Structure Determination

description: Related Article: Hannes Vitze, Michael Bolte, Matthias Wagner|2022|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2bg1c7
title: CCDC 2158448: Experimental Crystal Structure Determination

description: Related Article: Hannes Vitze, Michael Bolte, Matthias Wagner|2022|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2bg1d8
title: CCDC 2158449: Experimental Crystal Structure Determination

description: Related Article: Hannes Vitze, Michael Bolte, Matthias Wagner|2022|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2bg1mh
title: CCDC 2158456: Experimental Crystal Structure Determination

description: Related Article: Kerstin Kunz, Michael Bolte, Matthias Wagner|2022|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2bg1nj
title: CCDC 2158457: Experimental Crystal Structure Determination

description: Related Article: Kerstin Kunz, Michael Bolte, Matthias Wagner|2022|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2bg1yt
title: CCDC 2158466: Experimental Crystal Structure Determination

description: Related Article: Sebastian Scheuermann, Michael Bolte, Matthias Wagner|2022|CSD Communication|||
DOI: 10.14457/tu.the.2020.1169
title: Recovery of lithium from simulated secondary resources using combination technique of solvent extraction and electrodialysis

description: Lithium extraction is currently too inefficient to be economical or marketable. The objective of this work was to study the separation mechanism involved in lithium recovery from spent battery leachate via the combination of solvent extraction and an electrodialysis technique. The first step was to determine the best extractant and the most inexpensive approach to recover lithium chemically from lithium-ion batteries from a solution containing another desired metal. The Li2CO3 solution was used to represent leachate solution from a spent battery. The extraction efficiency of various extracting types was investigated. The highest level of efficiency for extracting lithium ions from aqueous solution was obtained with bis(2-ethylhexyl) phosphate (DEHPA), with 75% recovery. By studying the effects of selected extractants in this experiment, it was found that the acidic extractant group provided a better extraction efficiency than solvating extractants. Influential variables, including extraction time, pH of aqueous solution, and initial concentration were investigated further. The results indicate that 6 h of extraction brings the system to equilibrium, and pH 1.5 provides the best extraction efficiency. Another experiment was performed to determine the membrane efficiency using a Nafion membrane series without potential. It was found that the membrane from an extrusion melt process (Nafion117, Nafion115) achieved a higher level of efficiency than a membrane from a solution casting process (Nafion211, Nafion212). The highest level of efficiency was 52%, and this was achieved with the Nafion117 membrane. Then, the electrodialysis experiment was set up. This was done on a small scale with about 150 mL of Li2CO3 and 150 mL of DEHPA. The influences of the applied voltage and equilibrium separation were investigated. The greatest efficiency, 50%, was obtained with 0.8 V and the Nafion117 membrane. Separation began after 10 min and reached equilibrium after 30 min. There was a significant decrease in the time taken, from 32 h to 30 min, when the electrodialysis experiment was conducted as compared with a condition where no potential was applied.
DOI: 10.14457/tu.the.2020.1170
title: Analysis of water infiltration and heat transfer in multi-layered rectangular porous packed bed

description: The characteristics of heat transfer and water infiltration by hot water into the two-dimensional granular packed bed are experimentally studied. This investigation focused on the two-dimensional flow inside the column of unsaturated granular packed bed assuming the initial temperature at any point between the water and solid matrix equal to local thermal value. This study illustrated the dynamics of heat transfer and water infiltration in various testing cases. Furthermore, the influence of particle sizes also shown as well. The results presented here can be used as basic information for research on other purposes such as heat and water movement in the ground.