cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15096758
title: Processed Data for RegDiffusion-SCENIC pipeline

description: Processed mice lung dataset from GSE276682 (Wu, 2025). This data includes a control group (n=3) and an intervention group (n=3). In the intervention group, mices were administered with intraperitoneal injection of 30mg/ml lipopolysaccharide (LPS) in saline to induce acute lung injury.

The raw FASTQ data was processed with cellranger to generate expression matrix. The count matrix was then processed following standard scanpy procedure and we focused on genes expressed in at least 5 cells. The input data has 55,129 cells and 3,701 genes. 

It's used in the tutorial "Fast SCENIC GRN Analysis with RegDiffusion".

Wu, M., Wang, S., Chen, X., Shen, L., Ding, J., Jiang, H., 2025. Single-cell transcriptome analysis reveals cellular reprogramming and changes of immune cell subsets following tetramethylpyrazine treatment in LPS-induced acute lung injury. PeerJ 13, e18772. https://doi.org/10.7717/peerj.18772
DOI: 10.15468/dl.ujj22d
title: Occurrence Download

description: A dataset containing 949706 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Ghana"
 ]
}

 The dataset includes 949706 records from 522 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003937-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t4a4sj
title: Occurrence Download

description: A dataset containing 6077 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cybaeus L.Koch, 1868"
 ]
}

 The dataset includes 6077 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003962-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gp529m
title: Occurrence Download

description: A dataset containing 241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Lotus azoricus P.W.Ball",
 "Year 1975-2025"
 ]
}

 The dataset includes 241 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003963-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ftsp8u
title: Occurrence Download

description: A dataset containing 276154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is one of (Kenya, Uganda, Tanzania, United Republic of)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Muscicapidae",
 "Year 2010-2025"
 ]
}

 The dataset includes 276154 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003930-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zdpztd
title: Occurrence Download

description: A dataset containing 701 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cycloctenus L.Koch, 1878"
 ]
}

 The dataset includes 701 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003964-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p9mmm8ot
title: Fish eggs collected in the St. Clair, Detroit, and St. Marys rivers, 2005-2022

description: A long-term, multiseason, fish egg sampling program is conducted annually on the Detroit, Saint Clair, and Saint Marys rivers to identify where productive fish spawning habitat currently exists and evaluate habitat restoration projects. Egg mats were placed on the river bottom during the spring and fall at historic spawning areas, candidate fish spawning habitat restoration sites, and completed spawning habitat restoration sites throughout the rivers. Widespread evidence was found of lithophilic spawning by numerous native fish species, including walleye (Sander vitreus), lake whitefish (Coregonus clupeaformis), lake sturgeon (Acipenser fulvescens), suckers (Family: Catostomidae), and trout-perch (Percopsis omiscomaycus). The data describe the number, density, date of collection, and exact collection location of fish eggs collected in the St. Clair (2010-2022), Detroit (2005-2022), and St. Marys rivers (2018-2022).
DOI: 10.15468/dl.57my6k
title: Occurrence Download

description: A dataset containing 7823 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Herpyllus ecclesiasticus Hentz, 1832"
 ]
}

 The dataset includes 7823 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003965-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zdrsw4
title: Occurrence Download

description: A dataset containing 131787 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than 50000",
 "Year is 2006",
 "DecimalLongitude is greater than or equal to 7.38",
 "DecimalLongitude is less than or equal to 9.03",
 "DecimalLatitude is greater than or equal to 55.1",
 "DecimalLatitude is less than or equal to 56.06"
 ]
}

 The dataset includes 131787 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003943-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9k79a8
title: Occurrence Download

description: A dataset containing 2849 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Picumnus nebulosus Sundevall, 1866"
 ]
}

 The dataset includes 2849 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003967-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hnc532
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Toxopsiella Forster, 1964"
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003968-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zk3hc
title: Occurrence Download

description: A dataset containing 4817 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.33_1",
 "TaxonKey is Sylvilagus floridanus (J.A.Allen, 1890)"
 ]
}

 The dataset includes 4817 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003969-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15096735
title: Modeled and measured urban air and land surface temperature data in Salzburg
title: used in "Comparison of numerical modeling and statistical downscaling of land surface temperature as a basis for urban climate analyses"

description: Modeled and measured urban air and land surface temperature data in Salzburg

used in the publication "Comparison of numerical modeling and statistical downscaling of land surface temperature as a basis for urban climate analyses"

 

This record contains the data used in the figures of the publication "Comparison of numerical modeling and statistical downscaling of land surface temperature as a basis for urban climate analyses" submitted to the journal "Urban Climate".

Figure 1: Daytime LST used in the air temperature regression



DMSG-LST_2020-08-01T1400.tif

ECOSTRESS-LST_2023-06-13T1240.tif

LANDSAT-LST_2020-07-30T1000.tif


 

Figure 2: Nighttime LST used in the air temperature regression



DMSG-LST_2020-08-01T0200.tif

ECOSTRESS-LST_2023-07-09T0252.tif


 

Figure 5: Air temperature in Salzburg on 2020-08-01, modeled using terrain height and DMSG-LST for the afternoon and morning



ta_2020-08-01T1400_DMSG-LST.tif

ta_2020-08-01T0200_DMSG-LST.tif


 

Figure 6: Air temperature timeseries, observed and modeled using DMSG-LST and terrain height, for the 2020 period at 6 stations using hourly averages



ta_stations_timeseries_2020-07_DMSG-LST.csv


 

Figure 7, 8. 9, 10: Modeled and measured air temperature at 12 stations in the city of Salzburg for different times 



ta_stations_2020-08-01T1400.csv

ta_stations_2020-08-01T0200.csv

ta_stations_2019-06-30T1400.csv

ta_stations_2019-06-30T0200.csv


 

Figure 11: Air temperature in Salzburg on 2020-08-01, modeled using terrain height and MUKLIMO-T for the afternoon and morning



ta_2020-08-01T1400_MUKLIMO-T.tif

ta_2020-08-01T0200_MUKLIMO-T.tif
DOI: 10.5281/zenodo.15096736
title: Modeled and measured urban air and land surface temperature data in Salzburg
title: used in "Comparison of numerical modeling and statistical downscaling of land surface temperature as a basis for urban climate analyses"

description: Modeled and measured urban air and land surface temperature data in Salzburg

used in the publication "Comparison of numerical modeling and statistical downscaling of land surface temperature as a basis for urban climate analyses"

 

This record contains the data used in the figures of the publication "Comparison of numerical modeling and statistical downscaling of land surface temperature as a basis for urban climate analyses" submitted to the journal "Urban Climate".

Figure 1: Daytime LST used in the air temperature regression



DMSG-LST_2020-08-01T1400.tif

ECOSTRESS-LST_2023-06-13T1240.tif

LANDSAT-LST_2020-07-30T1000.tif


 

Figure 2: Nighttime LST used in the air temperature regression



DMSG-LST_2020-08-01T0200.tif

ECOSTRESS-LST_2023-07-09T0252.tif


 

Figure 5: Air temperature in Salzburg on 2020-08-01, modeled using terrain height and DMSG-LST for the afternoon and morning



ta_2020-08-01T1400_DMSG-LST.tif

ta_2020-08-01T0200_DMSG-LST.tif


 

Figure 6: Air temperature timeseries, observed and modeled using DMSG-LST and terrain height, for the 2020 period at 6 stations using hourly averages



ta_stations_timeseries_2020-07_DMSG-LST.csv


 

Figure 7, 8. 9, 10: Modeled and measured air temperature at 12 stations in the city of Salzburg for different times 



ta_stations_2020-08-01T1400.csv

ta_stations_2020-08-01T0200.csv

ta_stations_2019-06-30T1400.csv

ta_stations_2019-06-30T0200.csv


 

Figure 11: Air temperature in Salzburg on 2020-08-01, modeled using terrain height and MUKLIMO-T for the afternoon and morning



ta_2020-08-01T1400_MUKLIMO-T.tif

ta_2020-08-01T0200_MUKLIMO-T.tif
DOI: 10.15468/dl.u3wy7v
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Grammitis azorica (H.Schaef.) H.Schaef.",
 "Year 1975-2025"
 ]
}

 The dataset includes 35 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003970-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j7wy9g
title: Occurrence Download

description: A dataset containing 39141 species occurrences available in GBIF matching the query:
{
 "and" : [
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "TaxonKey is Cyanistes caeruleus (Linnaeus, 1758)",
 "Year 2024-2025"
 ]
}

 The dataset includes 39141 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003966-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5525/gla.researchdata.1936
title: The effects of a product of the solid-state fermentation of Aspergillus niger on the in vitro rumen fermentation kinetics of rations fed to dairy cattle.
DOI: 10.15468/dl.hg9aca
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Titanobochica Zaragoza & Reboleira, 2010"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003971-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18150/uz1lzj
title: Metafora śmierci i umierania w językach oshiwambo i otjiherero

description: Ze śmiercią i przemijaniem często staramy się oswoić i konstruować takie ich wyobrażenie, które byłoby dla nas łatwiejsze do zaakceptowania. Jednym z podstawowych narzędzi, które pomaga nam ten cel osiągnąć jest metafora.Działanie naukowe prowadzone w ramach grantu MINIATURA 7 koncentruje się na dwóch językach z rodziny bantu: oshiwambo i otjiherero.W Namibii, podobnie jak w innych częściach świata, śmierć i umieranie objęte są tabu kulturowym. Użytkownicy języków oshiwambo i otjiherero, tak jak użytkownicy innych języków naturalnych, często posługują się metaforą, aby opanować strach przed śmiercią i nadać śmierci trochę bardziej zrozumiałą i przyjazną formę.Istnieje luka badawcza, którą działanie ma wypełnić. W Namibii, po uzyskaniu niepodległości, status języka urzędowego nadano językowi angielskiemu, który obecnie praktycznie wyparł języki lokalne ze szkół, mediów, świata polityki czy biznesu. Dominacja języka angielskiego niestety spowodowała również mniejsze zainteresowanie językami lokalnymi ze strony językoznawców. Języki te zostały wprawdzie opisane (np. Fivaz 2003, Möhlig i Kavari 2008), lecz opisy te koncentrują się głównie na ich dystynktywnych cechach fonologicznych, morfologicznych czy składniowych. Niewiele uwagi poświęca się natomiast semantyce. Z moich ustaleń wynika, iż metaforyka języków oshiwambo i otjiherero, szczególnie metafora śmierci, nie została udokumentowana. Nieliczne opisy, które można odnaleźć dotyczą innych subsaharyjskich języków afrykańskich lub innej tematyki. Na przykład Owiredu (2020) porusza temat metafory śmierci w języku akan, Siemiątkowska (2006) w języku hausa, a Ohly (1998) pisze o metaforze w otjiherero, jednak jedynie w kontekście wybranych toponimów.Działanie naukowe prowadzone w ramach grantu MINIATURA 7 jest badaniem pilotażowym i ma pozwolić na lepsze poznanie języków oshiwambo i otjiherero i będzie stanowić uzupełnienie istniejącej literatury.Niniejszy zbiór danych zawiera:notatki sporządzone podczas rozmów z Paavo Hasheela - autorem wielu publikacji dotyczących oshikwanyama - jednego z dwóch dialektów języka oshiwambo,zapiski sporządzone podczas wywiadów z rodzimymi użytkownikami oshiwambo, otjiherero, xhosa i innych języków regionalnych.
DOI: 10.15468/dl.h63u3v
title: Occurrence Download

description: A dataset containing 427 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Metabarcoding survey of Chironomids and Oligochaetes in Lake Maggiore"
 ]
}

 The dataset includes 427 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003972-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cbdq83
title: Occurrence Download

description: A dataset containing 1652 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-34.07296 33.89177,-22.36565 33.89177,-22.36565 43.22441,-34.07296 43.22441,-34.07296 33.89177))",
 "TaxonKey is Platanthera micrantha (Hochst. ex Seub.) Schltr.",
 "Year 1975-2025"
 ]
}

 The dataset includes 1652 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003973-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7msap6
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hormurus polisorum (Volschenk, Locket & Harvey, 2001)"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003974-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6xxfb7
title: Occurrence Download

description: A dataset containing 652 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Platanthera azorica Schltr.",
 "Year 1975-2025"
 ]
}

 The dataset includes 652 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003976-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vhukfw
title: Occurrence Download

description: A dataset containing 1652 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-35.06422 34.43949,-22.35367 34.43949,-22.35367 44.00717,-35.06422 44.00717,-35.06422 34.43949))",
 "TaxonKey is Platanthera micrantha (Hochst. ex Seub.) Schltr.",
 "Year 1975-2025"
 ]
}

 The dataset includes 1652 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003975-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25953931
title: Understanding the contribution of plastic additive in microplastics toxicity from consumer products using fathead minnow (<i>Pimephales promelas</i>)

description: The data is associated with 'Understanding the contribution of plastic additive in microplastics toxicity from consumer products using fathead minnow (<i>Pimephales promelas</i>).' and is about the exposure of fathead minnow to plastic with or without additives to estimate the role of plastic additive in microplastic toxicity.Data are separated by Figures from the paper.
DOI: 10.15468/dl.s8wumv
title: Occurrence Download

description: A dataset containing 7545 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "TaxonKey is Acinonyx jubatus (Schreber, 1775)"
 ]
}

 The dataset includes 7545 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003977-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive147341.20241212.9.2
title: Bifidobacterium animalis subsp. lactis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive147341.20251217.10
title: Bifidobacterium animalis subsp. lactis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0135378.10fu
title: SH0135378.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive147342.20241212.9.2
title: Flavobacterium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive147342.20251217.10
title: Flavobacterium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0135379.10fu
title: SH0135379.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive147343.20241212.9.2
title: Raoultella terrigena

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0135380.10fu
title: SH0135380.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive147343.20251217.10
title: Raoultella terrigena

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.