cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/cdd0c9cff6f952c2c22a785682843372
title: Non-Photochemical Quenching (NPQ) data for Lake Tahoe and Clear Lake 2016-2022

description: Field chlorophyll a fluorescence and laboratory chlorophyll a measurements were collected at two endmember lakes (in terms of lake clarity and productivity) to develop a Non-Photochemical Quenching (NPQ) correction model. Several chlorophyll a fluorometers were deployed during each sampling event to collect high-resolution measurements. Coincident discrete water samples were collected during the experiment for subsequent laboratory chlorophyll a analysis. The sampling events occurred at Buckingham Park in Clear Lake (39.00°N, 122.75°W) and at Homewood in Lake Tahoe (39.09°N, 120.16°W). This data is associated with a Ph.D. dissertation chapter (https://escholarship.org/uc/item/2m9345g9) and a journal manuscript (https://doi.org/10.1002/lom3.10697).
DOI: 10.22002/0yj3x-peh94
title: P. gingivalis ABK mutant

description: Triple gingipain ABK mutant in the P. gingivalis W50 strain
description: <strong>Tilt Series Date:</strong> 2018-01-15</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Species / Specimen:</strong> Porphyromonas gingivalis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 205.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Reynolds</p>
<strong>Sample Preparation:</strong> Harvested and plunge-frozen from liquid culture.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-01-15-24/rawdata/</p>Pgin_33.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-01-15-24/rawdata/Pgin_33.mrc"
        > <i class="download icon"></i> Download </a></p>

        Pgin_33_part121_28.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-01-15-24/3dimage_91731/Pgin_33_part121_28.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dkeas-k0h69
title: Pseudomonas aeruginosa

description: Raw data files of Pseudomonas aeruginosa
description: <strong>Tilt Series Date:</strong> 2018-12-21</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> PA14 flgI::MrT7 (Tn)</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -10.0 μm,  magnification: 26000x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> These cells were obtained from Diana Newman lab (cells given by the lab manager Shannon Park) from the transposon library. This is number (4658) from the non-redundant list (FLgI mutant).</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-12-21-27/rawdata/</p>Pseudomonas_dflgI31.mrc,  Tilt Series (Pixel Size 0.53 nm), 1.5 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-12-21-27/rawdata/Pseudomonas_dflgI31.mrc"
        > <i class="download icon"></i> Download </a></p>

        Pseudomonas_dflgI31_full.rec,  Reconstruction (Pixel Size 2.12 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-12-21-27/3dimage_99857/Pseudomonas_dflgI31_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/mkjrq-15f78
title: Clostridium thermocellum

description: CTN7 cellulosome-free - provided by Yannick Bomble
description: <strong>Tilt Series Date:</strong> 2019-05-26</p>
<strong>Data Taken By:</strong> William Nicolas</p>
<strong>Species / Specimen:</strong> Clostridium thermocellum</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 50.0°), step: 2°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: -8.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Undefined</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Nicholas Sarai's project on C. thermocellum. He did all the work except the imaging where we were both there.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wnj2019-05-26-6/rawdata/</p>ctn7-3_sq1_cell2.mrc,  Tilt Series (Pixel Size 0.45 nm), 2.6 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wnj2019-05-26-6/rawdata/ctn7-3_sq1_cell2.mrc"
        > <i class="download icon"></i> Download </a></p>

        ctn7-3_sq1_cell2_full.rec,  Reconstruction (Pixel Size 1.8 nm), 1.5 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wnj2019-05-26-6/3dimage_103147/ctn7-3_sq1_cell2_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hmtz7-ry423
title: Caulobacter crescentus

description: Raw data files of Caulobacter crescentus
description: <strong>Tilt Series Date:</strong> 2018-07-14</p>
<strong>Data Taken By:</strong> Lujia Zhang</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> For the research of pilus, WT</p>
<strong>Purification / Growth Conditions / Treatment:</strong> swarmer cell, PVP</p>
<strong>Sample Preparation:</strong> force 4, time 6, humidity 100%, temp. 22</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-07-14-14/rawdata/</p>targ23.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.6 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-07-14-14/rawdata/targ23.mrc"
        > <i class="download icon"></i> Download </a></p>

        targ23_full.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-07-14-14/3dimage_100234/targ23_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/h2ja5-8ym12
title: P. gingivalis wild type

description: Raw data files of P. gingivalis wild type
description: <strong>Tilt Series Date:</strong> 2020-11-06</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Species / Specimen:</strong> Porphyromonas gingivalis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 170.0 eV/Å²,  defocus: -6.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Reynolds</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown and harvested from plates</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-369/rawdata/</p>PginWT9_368.mrc,  Tilt Series (Pixel Size 0.333 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-369/rawdata/PginWT9_368.mrc"
        > <i class="download icon"></i> Download </a></p>

        PginWT9_368_full.rec,  Reconstruction (Pixel Size 1.332 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-369/3dimage_115695/PginWT9_368_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/5mzna-fvj54
title: Caulobacter crescentus

description: Raw data files of Caulobacter crescentus
description: <strong>Tilt Series Date:</strong> 2018-09-11</p>
<strong>Data Taken By:</strong> Lujia Zhang</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> For the research of pilus, WT</p>
<strong>Purification / Growth Conditions / Treatment:</strong> swarmer cell, PVP</p>
<strong>Sample Preparation:</strong> force 4, time 6, humidity 100%, temp. 22</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-09-11-43/rawdata/</p>targ29.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-09-11-43/rawdata/targ29.mrc"
        > <i class="download icon"></i> Download </a></p>

        targ29_part120_2.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-09-11-43/3dimage_100487/targ29_part120_2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/7726v-vy631
title: CR2715_Janelia

description: Legionella thyA ΔdotG.This strain is published in Nat Mic (2018). Roy and Liu.
description: <strong>Tilt Series Date:</strong> 2018-08-27</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -6.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Legionella thyA ΔdotG.This strain is published in Nat Mic (2018). Roy and Liu.CR2715</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-27-613/rawdata/</p>CR2715_201808280028.mrc,  Tilt Series (Pixel Size 0.42 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-27-613/rawdata/CR2715_201808280028.mrc"
        > <i class="download icon"></i> Download </a></p>

        CR2715_201808280028_full.rec,  Reconstruction (Pixel Size 1.68 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-27-613/3dimage_96065/CR2715_201808280028_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.tsmnk2
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cedrus deodara",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046960-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/9nvhg-pqs76
title: Native EC93 Cells Cdi+

description: These are native cells that make CdiA imaged in response to reviewer comments.
description: <strong>Tilt Series Date:</strong> 2018-06-23</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Chris Hayes and Zach Ruhe</p>
<strong>Sample Preparation:</strong> Sample was frozen in BI Vitrobot. -5 ,4 freezing condition</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2018-06-23-5/rawdata/</p>T5NativeCellsCdi+107.mrc,  Tilt Series (Pixel Size 0.538 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2018-06-23-5/rawdata/T5NativeCellsCdi+107.mrc"
        > <i class="download icon"></i> Download </a></p>

        T5NativeCellsCdi+107_full.rec,  Reconstruction (Pixel Size 2.152 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2018-06-23-5/3dimage_93005/T5NativeCellsCdi+107_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/7b751-fyk87
title: P. gingivalis ABK mutant

description: Triple gingipain ABK mutant in the P. gingivalis W50 strain
description: <strong>Tilt Series Date:</strong> 2018-01-18</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Species / Specimen:</strong> Porphyromonas gingivalis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Reynolds</p>
<strong>Sample Preparation:</strong> Harvested and plunge-frozen from liquid culture.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-01-18-3/rawdata/</p>Pgin2_06.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-01-18-3/rawdata/Pgin2_06.mrc"
        > <i class="download icon"></i> Download </a></p>

        Pgin2_06_part61_1.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-01-18-3/3dimage_91821/Pgin2_06_part61_1.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hbtrf-kkw65
title: Pseudomonas aeruginosa

description: Raw data files of Pseudomonas aeruginosa
description: <strong>Tilt Series Date:</strong> 2018-12-21</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> PA14 flgI::MrT7 (Tn)</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -10.0 μm,  magnification: 26000x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> These cells were obtained from Diana Newman lab (cells given by the lab manager Shannon Park) from the transposon library. This is number (4658) from the non-redundant list (FLgI mutant).</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-12-21-31/rawdata/</p>Pseudomonas_dflgI4.mrc,  Tilt Series (Pixel Size 0.53 nm), 1.5 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-12-21-31/rawdata/Pseudomonas_dflgI4.mrc"
        > <i class="download icon"></i> Download </a></p>

        Pseudomonas_dflgI4_full.rec,  Reconstruction (Pixel Size 2.12 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-12-21-31/3dimage_99860/Pseudomonas_dflgI4_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/x04n4-n2a09
title: P. gingivalis wild type

description: Raw data files of P. gingivalis wild type
description: <strong>Tilt Series Date:</strong> 2020-11-06</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Species / Specimen:</strong> Porphyromonas gingivalis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 170.0 eV/Å²,  defocus: -6.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Reynolds</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown and harvested from plates</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-152/rawdata/</p>PginWT9_151.mrc,  Tilt Series (Pixel Size 0.333 nm), 1.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-152/rawdata/PginWT9_151.mrc"
        > <i class="download icon"></i> Download </a></p>

        PginWT9_151_full.rec,  Reconstruction (Pixel Size 1.332 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-152/3dimage_115274/PginWT9_151_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2zy1p-khr65
title: P. gingivalis wild type

description: Raw data files of P. gingivalis wild type
description: <strong>Tilt Series Date:</strong> 2020-11-06</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Species / Specimen:</strong> Porphyromonas gingivalis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 170.0 eV/Å²,  defocus: -6.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Reynolds</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown and harvested from plates</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-217/rawdata/</p>PginWT9_216.mrc,  Tilt Series (Pixel Size 0.333 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-217/rawdata/PginWT9_216.mrc"
        > <i class="download icon"></i> Download </a></p>

        PginWT9_216_full.rec,  Reconstruction (Pixel Size 1.332 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-11-06-217/3dimage_115405/PginWT9_216_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/7v1ps-62168
title: Pseudomonas aeruginosa

description: Raw data files of Pseudomonas aeruginosa
description: <strong>Tilt Series Date:</strong> 2019-01-12</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> PA14 flgI::MrT7 (Tn)</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -9.0 μm,  magnification: 26000x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> These cells were obtained from Diana Newman lab (cells given by the lab manager Shannon Park) from the transposon library. This is number (4658) from the non-redundant list (FlgI).</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-01-12-20/rawdata/</p>Paeruginosa_dflgI5.mrc,  Tilt Series (Pixel Size 0.53 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-01-12-20/rawdata/Paeruginosa_dflgI5.mrc"
        > <i class="download icon"></i> Download </a></p>

        Paeruginosa_dflgI5_full.rec,  Reconstruction (Pixel Size 2.12 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-01-12-20/3dimage_100639/Paeruginosa_dflgI5_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.15839026
title: Gadgetron Parallel Framework Corresponding Demo Datasets

description: This is the demo datasets that can be used with the open-sourced code for the Gadgetron Parallel Framework: ZihanNing/Practical_Inline_Recon_Framework-public: A practical framework to ease inline deployment of established offline MR reconstruction



SENSE demo (/Gadgetron/Parallel_Framework/SENSE_Recon_Demo): RAW_SWI_forSENSE_integratedACS.dat

AlignSENSE demo (/Gadgetron/Parallel_Framework/AlignSENSE_Recon_Demo):



T1-MPRAGE with auto-calibration lines: RAW_T1_MPRAGE_forAlignSENSE_seperateACS.dat

SWI with external reference scan



external reference scan: RAW_external_REF_forAlignSENSE_alignedSWIsmallFOV.dat

SWI: RAW_SWI_forAlignSENSE_smallFOV_seperateACS.dat





radial NUFFT demo (/Gadgetron/Parallel_Framework/radial_NUFFT_Demo): RAW_radial_multiechoGRE_Sodium_Invivo.dat


For detailed information about the code and instructions, please refer to:



git repo: ZihanNing/Practical_Inline_Recon_Framework-public: A practical framework to ease inline deployment of established offline MR reconstruction

user manual: User manual in Notion for the Gadgetron Parallel Framework