cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.20350/digitalcsic/16419
title: Supplementary Information Interplay between Livestock Grazing and Aridity on the Ecological and Nutritional Value of Forage in Semi-arid Mediterranean Rangelands (NE Spain)

description: Fig. S1 Location of study plots in the Middle Ebro Valley (Spain). See Table 1 for further details. Fig. S2 A) Number of sheep droppings (mean ± SE) per m2 for each grazing intensity and location. Different letters indicate significant differences among grazing intensities (post-hoc Tukey HSD test; p &lt; 0.05). Significance of differences was tested by fitting a generalized linear mixed model (GLMM) in which grazing intensity and location were set as fixed factors, and study plot was set as a random intercept effect. A negative binomial distribution of errors was specified in the model to deal with overdispersion. B) Schematic representation of study plots and sampling quadrats. Table S1 Mean (± SE) for the variables of interest at the plot level. See Materials and Methods section for further details. Fig. S3 Initial path diagram with the hypothesized causal relationships among variables. Grazing intensity and aridity level are exogenous variables, while woody index, diversity, plant cover, production, plant C:N ratio and fiber index are endogenous variables. A total of four path diagrams were generated, one for each final variable (i.e., plant cover, forage production, forage C:N ratio and forage fiber index). Directions of the arrows indicate the causal relationships between variables. Dashed arrow indicates a non-hypothesized missing path added during the evaluation of the overall models fit. See Materials and Methods section for further details. Fig. S4 Spearman correlation coefficients among all variables included in the SEM analysis. Blue and red colors indicate positive and negative correlations respectively, with more intense colors denoting higher correlation values. Visual representation of the correlation matrix was created with the GGally package in R 4.0.3. Fig. S5 Direct (dark colors) and indirect (light colors) effects of grazing intensity (solid bars) and aridity (dashed bars) on community plant cover, forage production, C:N ratio and fiber index, community structure and diversity at A) p &lt; 0.05 and B) p &lt; 0.1. Red bars indicate negative effects. Blue bars indicate positive effects. See Materials and Methods section for further details. Table S2 List of plant species found at the study plot level, their labels, forage value (FV) and plant cover (%).
DOI: 10.20350/digitalcsic/16417
title: Supporting Information : Fluorosilicone composites with functionalized graphene oxide for advanced applications
DOI: 10.20350/digitalcsic/16416
title: [Dataset] Assessment of endocrine disruptors effects on zebrafish (Danio rerio) embryos by untargeted LC-HRMS metabolomic analysis

description: The exposure protocol involved zebrafish embryos exposed in groups of 20 to various concentrations of chemical compounds, with five replicates per treatment. The concentrations ranged from the lowest observed effect concentrations (LOECs) to control levels. After exposure, embryos were collected, washed, frozen, and stored. Metabolites were extracted from individual embryo pools using methanol and methionine sulfone. The extraction process included vortexing, sonication, and centrifugation, followed by addition of water and chloroform. The aqueous fraction was dried and reconstituted using acetonitrile-water solution. Liquid chromatography coupled with high-resolution mass spectrometry (LC-HRMS) was used for analysis. Chromatographic separations were carried out on a hydrophilic interaction liquid chromatography (HILIC) column. Mass spectrometry was performed using an Orbitrap mass spectrometer with electrospray ionization in positive and negative modes. The mass spectra were acquired at high resolution, and fragmentation scans were used for metabolite identification. The overall process aimed to analyze the metabolomic profile of zebrafish embryos exposed to different chemical concentrations.
DOI: 10.20350/digitalcsic/16414
title: Supporting Information : Electrolytes for Zn Batteries: Deep Eutectic Solvents in Polymer Gels
DOI: 10.20350/digitalcsic/16415
title: Supplementary Material : Fluorescent dual-mode sensor for the determination of graphene oxide and catechin in environmental or food field
DOI: 10.5281/zenodo.13865509
title: Data on school well-being and resilience in Primary Education
DOI: 10.5281/zenodo.13865510
title: Data on school well-being and resilience in Primary Education
DOI: 10.20350/digitalcsic/16413
title: Supplementary materials : Detailed microstructure analysis through monomeric insertion modes of poly(propylene-co-norbornene) copolymers and poly(propylene-co-ethylene-co-norbornene) terpolymers with low norbornene contents
DOI: 10.20350/digitalcsic/16420
title: Long-range molecular energy transfer mediated by strong coupling to plasmonic topological edge states (dataset)

description: Strong coupling between light and molecular matter is currently attracting interest both in chemistry and physics, in the fast-growing field of molecular polaritonics. The large near-field enhancement of the electric field of plasmonic surfaces and their high tunability make arrays of metallic nanoparticles an interesting platform to achieve and control strong coupling. Two dimensional plasmonic arrays with several nanoparticles per unit cell and crystalline symmetries can host topological edge and corner states. Here we explore the coupling of molecular materials to these edge states using a coupled-dipole framework including long-range interactions. We study both the weak and strong coupling regimes and demonstrate that coupling to topological edge states can be employed to enhance highly-directional long-range energy transfer between molecules.
DOI: 10.20350/digitalcsic/16408
title: [Dataset] Comparative analysis of 1H NMR and 1H–13C HSQC NMR metabolomics to understand the effects of medium composition in yeast growth

description: NMR datasets used in https://doi.org/10.1021/acs.analchem.8b01196. In the corresponding study, we have performed a comparative chemometric analysis between untargeted 1H NMR and 1H-13C HSQC NMR analyses of metabolomics samples from Saccharomyces cerevisiae (yeast) extracts. Specifically, yeast was grown in two different liquid media and their metabolism was characterized at 8 different time-points of a 3-day period. The two media used, YPD (Yeast Peptone Dextrose) and YSC (Yeast nitrogen base Synthetic Complete), are broadly used in yeast lab routines, and results from this analysis should be of interest for improving lab methodologies involving yeast.
DOI: 10.20350/digitalcsic/16407
title: [Dataset] The variability of mass concentrations and source apportionment analysis of equivalent black carbon across urban Europe

description: This study analyzed the variability of equivalent black carbon (eBC) mass concentrations and their sources in urban Europe to provide insights into the use of eBC as an advanced air quality (AQ) parameter for AQ standards. This study compiled eBC mass concentration datasets covering the period between 2006 to 2022 from 50 measurement stations, including 23 urban background (UB), 18 traffic (TR), 7 suburban (SUB), and 2 regional background (RB) sites. The results highlighted the need for the harmonization of eBC measurements to allow for direct comparisons between eBC mass concentrations measured across urban Europe. The eBC mass concentrations exhibited a decreasing trend as follows: TR &gt; UB &gt; SUB &gt; RB. Furthermore, a clear decreasing trend in eBC concentrations was observed in the UB sites moving from Southern to Northern Europe. The eBC mass concentrations exhibited significant spatiotemporal heterogeneity, including marked differences in eBC mass concentration and variable contributions of pollution sources to bulk eBC between different cities. Seasonal patterns in eBC concentrations were also evident, with higher winter concentrations observed in a large proportion of cities, especially at UB and SUB sites. The contribution of eBC from liquid fossil fuel combustion, mostly traffic (eBCT) was higher than that of residential and commercial sources (eBCRC) in all European sites studied. Nevertheless, eBCRC still had a substantial contribution to total eBC mass concentrations at a majority of the sites. eBC trend analysis revealed decreasing trends for eBCT over the last decade, while eBCRC remained relatively constant or even increased slightly in some cities.
DOI: 10.20350/digitalcsic/16405
title: Spanish Marine Ecoregions Exposed to Synchronyzed Surface and Bottom Marine Heatwaves

description: In this repository, two datasets alongside Python and MATLAB codes developed for data analysis and figure representation for an article published in Ocean Modelling were compiled. The synchrony between surface (SMHWs) and bottom marine heatwaves (BMHWs) along the five Spanish Marine Demarcations was determined by computing Pearson’s correlation coefficient between the total monthly SMHW days and the total monthly BMHW days, providing a measure of temporal correlation. Furthermore, integrated exposure to MHWs was established as the overlap of tercile combinations involving both BMHW and SMHW synchrony, together with integrated cumulative intensity, resulting in nine distinct exposure levels.
description: BMHW & SMHW Synchrony; Integrated Exposure to MHWs
DOI: 10.20350/digitalcsic/16402
title: Additional file 1 of METTL1 promotes tumorigenesis through tRNA-derived fragment biogenesis in prostate cancer [Dataset]

description: Additional file 1: Supplementary Figure S1. Expression of RMPs in prostate tumours. A) mRNA expression of RMPs is significantly altered in human normal prostate tissue (N), primary (PT), and metastatic tumour (M). Y-axis shows log2-normalised expression data from Grasso et al. [7],Taylor et al. [6], and Varambally et al. [42] datasets (left panels). Kaplan–Meier curves showing disease-free survival (DFS) of patient groups selected according to decile expression of the indicated RMP genes (middle panel). The right panel shows differential expression in disease-free (DF) and recurrent patient samples from TCGA dataset [3]. B, C) Kaplan–Meier curves representing the disease-free survival (DFS) of patient groups selected according to the decile expression, data from the TCGA dataset [6] (TCGA: n = 491). D, E) PCa cell lines show increased METTL1 protein and mRNA levels. Western blotting showing METTL1, WDR4, AR, PTEN and phosphor-S6K expression (D), and qPCR (E) of normalised mRNA expression (lower panel) in prostate epithelial cell lines (PWR-1E and RWPE-1), benign prostatic hyperplasia cell lines (BPH1), and prostate cancer cell lines (VCap, C4-2, LNCaP, 22Rv1, DU145, and PC3). Mean ± SD (D, E). Statistical tests: ANOVA test (A), log-rank Cox test (A, B); Student’s t-test with Welch’s correction, grouping all data from benign vs. all data from tumour cells ****p &lt; 0.0001 (E).
DOI: 10.20350/digitalcsic/16403
title: Research data supporting "Unified treatment of light emission by inelastic tunneling: interaction of electrons and photons beyond the gap"

description: The dataset includes the numerical data presented in Phys. Rev. X 14, 021017 (2024), "Unified treatment of light emission by inelastic tunneling: interaction of electrons and photons beyond the gap", written by Unai Muniain, Ruben Esteban, Javier Aizpurua and Jean-Jacques Greffet (doi.org/10.1103/PhysRevX.14.021017). The dataset is organized into folders according to the explanation in the README file.
DOI: 10.20350/digitalcsic/16401
title: Table3_Sleep apnea-COPD overlap syndrome is associated with larger left carotid atherosclerotic plaques.docx [Dataset]

description: [Background]: Little is known about whether the overlap syndrome (OS) combining features of chronic obstructive pulmonary disease (COPD) and sleep apnea-hypopnea syndrome increases the risk of stroke associated with COPD itself.
description: [Methods]: We prospectively studied 74 COPD patients and 32 subjects without lung disease. Spirometry and cardiorespiratory polygraphy were used to assess the pulmonary function of the study population and ultrasound measurements of intima media thickness (IMT) as well as the volume of plaques in both carotid arteries were also evaluated.
description: [Results]: Polygraphic criteria of OS were met in 51% of COPD patients. We found that 79% of patients with OS and 50% of COPD patients without OS had atherosclerotic plaques in the left carotid artery (p = 0.0509). Interestingly, the mean volume of atherosclerotic plaques was significantly higher in the left carotid artery of COPD patients with OS (0.07 ± 0.02 ml) than in those without OS (0.04 ± 0.02 ml, p = 0.0305). However, regardless of the presence of OS, no significant differences were observed in both presence and volume of atherosclerotic plaques in the right carotid artery of COPD patients. Adjusted-multivariate linear regression revealed age, current smoking and the apnea/hypopnea index (OR = 4.54, p = 0.012) as independent predictors of left carotid atherosclerotic plaques in COPD patients.
description: [Conclusions]: This study suggests that the presence of OS in COPD patients is associated with larger left carotid atherosclerotic plaques, indicating that OS might be screened in all COPD patients to identify those with higher risk of stroke.
DOI: 10.20350/digitalcsic/16400
title: Table1_Sleep apnea-COPD overlap syndrome is associated with larger left carotid atherosclerotic plaques.docx [Dataset]

description: [Background]: Little is known about whether the overlap syndrome (OS) combining features of chronic obstructive pulmonary disease (COPD) and sleep apnea-hypopnea syndrome increases the risk of stroke associated with COPD itself.
description: [Methods]: We prospectively studied 74 COPD patients and 32 subjects without lung disease. Spirometry and cardiorespiratory polygraphy were used to assess the pulmonary function of the study population and ultrasound measurements of intima media thickness (IMT) as well as the volume of plaques in both carotid arteries were also evaluated.
description: [Results]: Polygraphic criteria of OS were met in 51% of COPD patients. We found that 79% of patients with OS and 50% of COPD patients without OS had atherosclerotic plaques in the left carotid artery (p = 0.0509). Interestingly, the mean volume of atherosclerotic plaques was significantly higher in the left carotid artery of COPD patients with OS (0.07 ± 0.02 ml) than in those without OS (0.04 ± 0.02 ml, p = 0.0305). However, regardless of the presence of OS, no significant differences were observed in both presence and volume of atherosclerotic plaques in the right carotid artery of COPD patients. Adjusted-multivariate linear regression revealed age, current smoking and the apnea/hypopnea index (OR = 4.54, p = 0.012) as independent predictors of left carotid atherosclerotic plaques in COPD patients.
description: [Conclusions]: This study suggests that the presence of OS in COPD patients is associated with larger left carotid atherosclerotic plaques, indicating that OS might be screened in all COPD patients to identify those with higher risk of stroke.
DOI: 10.20350/digitalcsic/16389
title: dataset for dormice and climate at edge populations
DOI: 10.20350/digitalcsic/16388
title: Raw Western blot images from Fig 5D–5F [Dataset]

description: Aquaporin-mediated oocyte hydration is a developmentally regulated adaptive mechanism that co-occurs with meiosis resumption in marine teleosts. It provides the early embryos with vital water until osmoregulatory systems develop, and in the majority of marine teleosts causes their eggs to float. Recent studies have shown that the subdomains of two water channels (Aqp1ab1 and Aqp1ab2) encoded in a teleost-specific aquaporin-1 cluster (TSA1C) co-evolved with duplicated Ywhaz-like (14-3-3ζ-like) binding proteins to differentially control their membrane trafficking for maximal egg hydration. Here, we report that in species that encode the full TSA1C, in-frame intronic splice variants of Aqp1ab1 result in truncated proteins that cause dominant-negative inhibition of the canonical channel trafficking to the plasma membrane. The inhibition likely occurs through hetero-oligomerization and retention in the endoplasmic reticulum (ER) and ultimate degradation. Conversely, in species that only encode the Aqp1ab2 channel we found an in-frame intronic splice variant that results in an intact protein with an extended extracellular loop E, and an out-of frame intronic splice variant with exon readthrough that results in a truncated protein. Both isoforms cause dominant-negative enhancement of the degradation pathway. However, the extended and truncated Aqp1ab2-type variants can also partially escape from the ER to reach the oocyte plasma membrane, where they dominantly-negatively inhibit water flux. The ovarian follicular expression ratios of the Aqp1ab2 isoforms in relation to the canonical channel are lowest during oocyte hydration, but subsequently highest when the canonical channel is recycled, thus leaving the eggs endowed with &gt;90% water. These findings suggest that the expression of inhibitory isoforms of Aqp1ab1 and Aqp1ab2 may represent a new regulatory mechanism through which the cell-surface expression and the activity of the canonical channels can be physiologically modulated during oocyte hydration in marine teleosts.
DOI: 10.20350/digitalcsic/14794
title: tempNorthBryo - mosses occurrences dataset from the temperate region of the north hemisphere

description: [EN] Dataset of publicly available biodiversity information of mosses records from the temperate region of the Northern Hemisphere. It contains 9,195,062 occurrences result of the compilation, cleaning, enrichment and validation from the Global Biodiversity Information Facility (GBIF 2021; phylum=Bryophyta), the Botanical Information and Ecology Network (BIEN), Consortium of North American Bryophyte Herbaria (CNABH) and the Integrated digitized biocollections (iDigBio). This database was created to assess and quantify how the application of different filters and taxonomic standardization databases affect the spatial patterns of species richness (Ronquillo et al, not published).
description: [ES] Conjunto de datos con los 9,195,062 registros disponibles públicamente de presencias de musgos en la región templada del hemisferio norte. Los datos contenidos han sido compilados, limpiados y validados a partir de los registros presentes en el portal de datos de biodiversidad 'Global Biodiversity Information Facility' (GBIF 2021; filo=Bryophyta), 'Botanical Information and Ecology Network' (BIEN), 'Consortium of North American Bryophyte Herbaria' (CNABH) y el portal 'Integrated digitized biocollections' (iDigBio). Esta base de datos fue creada con el objetivo de analizar si la aplicación de diferentes filtros de limpieza de datos y métodos de estandarización taxonómica afectan a la distribución geográfica de la riqueza de especies (Ronquillo et al, no publicado).
DOI: 10.20350/digitalcsic/14810
title: UnitedSixSoilMoss - Six cosmopolite Mediterranean soil moss species global distribution dataset

description: Dataset of publicly available biodiversity information of mosses records of six different species. The selected species are Tortella squarrosa (Brid.) Limpr., Dicranum scoparium Hedw., Syntrichia ruralis (Hedw.) F.Weber & D.Mohr, Ptychostomum capillare (Hedw.) D.T.Holyoak & N.Pedersen, Homalothecium aureum (Spruce) H.Rob. and Hypnum cupressiforme Hedw. The dataset contains 322,595 occurrences result of the compilation, cleaning, enrichment and validation from the Global Biodiversity Information Facility (GBIF; Downloaded in January 2019 from their occurrence website). This database was elaborated to develope species distribution models and make predictions of their future geographical distribution based on different climate change scenarios.
DOI: 10.20350/digitalcsic/16383
title: Dataset of Pollination effectiveness affects the level of generalisation of a plant species with phenotypically plastic flowers

description: [Description of methods used for collection/generation of data] Pollinator surveys, experimental determination of pollinator preference and effectiveness. [Methods for processing the data] R Statistical Software.
description: The datasets include the information of the survays made during more than seven years in six populations of Moricandia arvensis (Brassicaceae) of the SE Spain during spring and summer (Dataset S1), the results of an experiment testing the preference of pollinators for both types of floral morphs of M. arvensis (spring floral morph and summer floral morph) done in field conditions both in spring and summer time (Dataset 2) and the results of an experiment testing the effectiveness of the pollinators of M. arvensis when visiting single flowers, both at the level of fruit production (Dataset 3) and seed production (Dataset 4).
description: Dataset 1-4
DOI: 10.20350/digitalcsic/16382
title: Quantitative Study of Triboemission Kinetics from Polymer Fiber-Reinforced Mortar Paving Blocks: Unraveling the Dynamics of Nanoparticle Aerosol Release

description: Triboemission_data.xlsx DVS_data.xlsx N2_isotherm_data.xlsx He pycnometry_data.xlsx Raman_data.xlsx
description: Mortar blocks with addition of recycled polyurethane fibers (PUF) were subjected to abrasion using an original pin-on-disk tribometer in order to investigate the kinetic parameters and emission mechanisms of fine and ultrafine aerosol nanoparticles and the effect of the fiber concentration on the mechanical, tribological, and triboemission properties. Three different samples, referred as A (20% substitution level), B (40%), and C (60%) and a reference sample (Ref.) were analyzed for this study. The abrasion was performed in an environment chamber with filtered air using a stationary alumina sphere, 20 mm in diameter, which was pressed against the rotating sample using a dead weight of 1.3 kg. The sliding speed was 1 m s-1. A quantitative methodology was employed to assess the deposition rate, particle size distribution, and emissivity. The triboemission properties were correlated with the pore structure, morphology and tribochemical transformations of the particles and worn surfaces. The specific surface area, distribution of micro- and mesopore sizes, and skeleton density were evaluated through a comprehensive analysis involving three distinct methods: dynamic water adsorption, N2 adsorption, and He pycnometry. The mechanically affected zones were characterized using white-light confocal microscopy and Raman spectroscopy. The function of the particle size distribution exhibited two modes, with the most probable particle size falling within the range of 115-156 nm. Interestingly, the PUFs addition did not changed considerably the size of the particles. The aggregation of PUFs resulted in a gradual increase in the volume of pores, particularly mesopores, as well as an increase in the specific surface area. The study's results demonstrated a decline in the deposition rate of aerosol particles within the 10 to 60 nm aerodynamic diameter range as the concentration of PUFs increased. This observation strongly suggested the occurrence of direct emission of polymeric aerosol particles resulting from the abrasion of PUFs. The findings of this research provide valuable insights into the intricate relationship between material composition, particle size distribution, porosity, and emission kinetics.
description: Triboemission_data.xlsx DVS_data.xlsx N2_isotherm_data.xlsx He pycnometry_data.xlsx Raman_data.xlsx
DOI: 10.20350/digitalcsic/16380
title: Supporting information to: Screening of organic chemicals associated to virgin low-density polyethylene microplastic pellets exposed to the Mediterranean Sea environment by combining gas chromatography and liquid chromatography coupled to quadrupole-time-of-flight mass spectrometry

description: 11 páginas, 1 tabla, 2 figuras