cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15035781
title: French Food Outlets Locations

description: The dataset presented here draws on several French institutional database sources. The aim is to develop a nationwide database of food outlet locations that can be automatically enriched and updated with a high level of reliability. To this end, we created a flexible and dynamic Python script that can be widely utilized by a maximum of users. Data can be updated either on a daily basis to create a series of files within a limited timeframe, or on a monthly basis to reflect updates to the SIRENE 3.11 database of the national statistical institute INSEE.

The data set was generated using the Jupyter Notebook processes available in the FEAST simulation library. Link: https://github.com/FEAST-simulation-library/French-Food-Outlets
DOI: 10.5281/zenodo.15035782
title: French Food Outlets Locations

description: The dataset presented here draws on several French institutional database sources. The aim is to develop a nationwide database of food outlet locations that can be automatically enriched and updated with a high level of reliability. To this end, we created a flexible and dynamic Python script that can be widely utilized by a maximum of users. Data can be updated either on a daily basis to create a series of files within a limited timeframe, or on a monthly basis to reflect updates to the SIRENE 3.11 database of the national statistical institute INSEE.

The data set was generated using the Jupyter Notebook processes available in the FEAST simulation library. Link: https://github.com/FEAST-simulation-library/French-Food-Outlets
DOI: 10.7910/dvn/oxpyfg
title: Dataverse submission for Rollout of Pediatric Dolutegravir: Cost-Effectiveness of Viral Load Testing for Transitioning ART-experienced Children to Dolutegravir in South Africa

description: These materials are from an analysis funded in part by the National Institutes of Health. We are sharing these on the Harvard Dataverse in compliance with the Data Sharing and Management Plan associated with support from R37 HD079214 (PI: Ciaranello). The full analysis has been published in Lancet Glob Health, and relevant components of the published manuscript and appendix are reproduced here.
DOI: 10.7910/dvn/otl6lo
title: Executive Agreements Database, Statement Regarding Agreement Between The United States and Hungary Concerning Economic, Technical and Related Assistance. Signed At Budapest December 22, 1995.

description: TIAS 12715 cover memo
DOI: 10.7910/dvn/oxiwwv
title: CitcomS output data for Jones and Evans (2023)

description: This multi-directory dataset contains the output files necessary to reproduce plots and animations from Jones and Evans (2023), "The Early Lunar Interior State and Origins of the Mg-Suite: Antipodal Mantle Overturn After a ≤4.495–4.42 Ga South Pole–Aitken Impact".
DOI: 10.7910/dvn/ndxjj3
title: A92_5196b.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/26eba03c-6153-1486-b437-0cc9206137fb'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/26eba03c-6153-1486-b437-0cc9206137fb
DOI: 10.7910/dvn/ywhtlz
title: A13_24495.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/b5c87a85-b9a3-4ef5-9483-d895e2f82fac'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/b5c87a85-b9a3-4ef5-9483-d895e2f82fac
DOI: 10.15468/dl.2a5kwk
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Plethodon jacksoni Newman, 1954)"
 ]
}

 The dataset includes 152 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010050-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqevw4
title: Occurrence Download

description: A dataset containing 693 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Lithobates sphenocephalus utricularius (Harlan, 1826))"
 ]
}

 The dataset includes 693 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010051-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/hhpvls
title: modbm_us_102_8_062

description: [Petitions] : To the Congress of the United States. The petition of the undersigned, citizens of [-] in the Commonwealth of Massachusetts .
description: URN-3:FHCL.HOUGH:100937283
DOI: 10.7910/dvn/ix3awv
title: P calibration on Maize

description: Result for experiment
DOI: 10.7910/dvn/b7q8so
title: A88_1876.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/b63db849-e5d0-4787-b522-5bc73ce4618f'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/b63db849-e5d0-4787-b522-5bc73ce4618f
DOI: 10.7910/dvn/i8nvlz
title: Modelo de regressão linear múltipla aplicada nas Instituições Federais de Ensino Técnico da Região Nordeste

description: Educação, Eficiência acadêmica, Institutos federai, Nordeste
DOI: 10.7910/dvn/owsbgz
title: A16_31421.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/35512c94-2315-49bb-ab2f-01b0be8e529e'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/35512c94-2315-49bb-ab2f-01b0be8e529e
DOI: 10.7910/dvn/tbkyfm
title: Code and data for arXiv:2501.19097

description: Code and data for arXiv:2501.19097 "Analysis of the sensitivity of tumor control probability in molecular radiotherapy to uncertainties in the dose rate curves"

Code and data are shared as matlab files (.m and .mat). Information on the content of each file can be found in the README file.
DOI: 10.7910/dvn/sbvfac
title: 2023 Kentucky Youth Tobacco Control Workshop Survey Data

description: This set includes data for the baseline and feedback surveys of the 2023 Kentucky Youth Tobacco Control Workshop and is intended to supplement research works relating to this event.
DOI: 10.7910/dvn/iex083
title: Replication Data: Leveraging Researcher Domain Expertise to Annotate Concepts within Imbalanced Data

description: In this manuscript, we describe a method to utilize researcher domain expertise to annotate concepts efficiently and accurately within an imbalanced dataset. This folder contains two scripts that run two variations of the simulation referred to in our paper. Additionally, we included two separate datasets that were utilized in the simulations. For each, we shared the list of document embeddings used for classification, together with a corresponding CSV which holds the categorical labels for each embedding. We recommend first reading the "README" text file, before running the scripts.
DOI: 10.15468/dl.ykzjvg
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "TaxonKey is Rhincodon typus Smith, 1828"
 ]
}

 The dataset includes 44 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010052-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/luxurs
title: A04_14370b.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/def0abdb-0b42-4d27-bfbb-1a86dd25522b'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/def0abdb-0b42-4d27-bfbb-1a86dd25522b
DOI: 10.7910/dvn/thm6hu
title: KD and CBF

description: Contains value of cerebral brain perfusion for different parts of the brain
DOI: 10.7910/dvn/ix8tsa
title: The phospholipase effector Tle1Vc promotes Vibrio cholerae virulence by killing competitors and impacting gene expression

description: Vibrio cholerae utilizes the Type VI secretion system (T6SS) to gain an advantage in interbacterial competition by delivering antiprokaryotic effectors in a contact-dependent manner. However, the impact of T6SS and its secreted effectors on physiological behavior remains poorly understood. In this study, we present Tle1Vc, a lipase effector in atypical pathogenic V. cholerae E1 that is secreted by T6SS via its interaction with VgrG1E1. Tle1Vc contains a DUF2235 domain and belongs to the Tle1 (type VI lipase effector) family. Bacterial toxicity assays, lipase activity assays, and site-directed mutagenesis revealed that Tle1Vc-induced toxicity required two aspartic acid residues (D417 and D496) and a serine residue (S356). Cell intoxication with Tle1Vc leads to membrane depolarization and altered membrane permeability. Tli1tox-, a cognate immunity protein, directly interacts with Tle1Vc to neutralize its toxicity. Moreover, Tle1Vc can kill multiple microorganisms and promote in vivo fitness of V. cholerae. Tle1Vc induces bacterial motility by increasing the expression of flagellar-related genes independently of functional T6SS and the tit-for-tat (TFT) response, where Pseudomonas aeruginosa uses its T6SS-H1 cluster to counterattack other offensive attackers. Our study also demonstrated that the physical puncture of E1 T6SS can induce a moderate TFT response, which is essential to the Tle1Vc-mediated strong TFT response, maximizing effector functions. Overall, our study characterized the Tle1Vc lipase effector and its physiological significance.
DOI: 10.7910/dvn/scnyb0
title: Replication Data for: Our Common Bonds

description: replication data for the analyses in Our Common Bonds (University of Chicago Press, 2023).
DOI: 10.23645/epacomptox.28912631
title: Evaluating Life-Stage and Population Toxicokinetic Variability Using In Vitro CYP450 and UGT Metabolism Systems

description: Absorption, Distribution, Metabolism and Excretion (ADME) are all subject to variation in different human populations as well as lifestages. While physiologic differences will affect all four of these toxicokinetic properties to a moderate degree, differences in metabolism due to either differing enzyme abundances over a lifespan or genetic polymorphisms may have a more significant effect, which could potentially be predicted with an understanding of the physicochemical properties and toxicokinetic differences for each chemical. As experimental data to inform the contribution of either cytochrome P450 enzymes and/or uridine diphosphoglucuronosyl transferases (UGTs) to xenobiotic metabolism is very limited, particularly for non-drug chemicals subject to TSCA, FIFRA, and other legislative mandates, this effort set out to generate in vitro toxicokinetic clearance data for a subset of isozymes known to affect toxicokinetic variability more readily than others based on earlier studies by this lab. The data were used as inputs in a PBTK modeling platform designed to adjust for ontogenetic differences across different lifestages, to evaluate the contribution of each toward toxicokinetic variability. This dataset provides chemical-specific information, toxicokinetic assay and analytical data used as inputs in the model; along with model outputs for evaluation.Search for CCTE records in EPA’s Science Inventory by typing in the title at this link:https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.23645/epacomptox.28912631.v1
title: Evaluating Life-Stage and Population Toxicokinetic Variability Using In Vitro CYP450 and UGT Metabolism Systems

description: Absorption, Distribution, Metabolism and Excretion (ADME) are all subject to variation in different human populations as well as lifestages. While physiologic differences will affect all four of these toxicokinetic properties to a moderate degree, differences in metabolism due to either differing enzyme abundances over a lifespan or genetic polymorphisms may have a more significant effect, which could potentially be predicted with an understanding of the physicochemical properties and toxicokinetic differences for each chemical. As experimental data to inform the contribution of either cytochrome P450 enzymes and/or uridine diphosphoglucuronosyl transferases (UGTs) to xenobiotic metabolism is very limited, particularly for non-drug chemicals subject to TSCA, FIFRA, and other legislative mandates, this effort set out to generate in vitro toxicokinetic clearance data for a subset of isozymes known to affect toxicokinetic variability more readily than others based on earlier studies by this lab. The data were used as inputs in a PBTK modeling platform designed to adjust for ontogenetic differences across different lifestages, to evaluate the contribution of each toward toxicokinetic variability. This dataset provides chemical-specific information, toxicokinetic assay and analytical data used as inputs in the model; along with model outputs for evaluation.Search for CCTE records in EPA’s Science Inventory by typing in the title at this link:https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.7910/dvn/oytbih
title: Replication Data for: Favorable effects, modes of use, and adverse reactions to cannabinoids in the management of autoimmune diseases: A scoping review.

description: Cannabinoids are coadjuvant drugs to treat chronic pain, fatigue, and spasticity symptoms in patients with autoimmune diseases[AImmDs]. We conducted a Scoping Review to provide an overview of the available evidence regarding the favorable effects, modes of use, and adverse drug reactions (ADRs) secondary to cannabinoids used as coadjuvant drugs for patients with AImmDs. Papers that estimated Cannabis, cannabinoids, or metabolites' effects on symptoms in AImmDs´ patients were retrieved, and data regarding specific cannabinoids, types [THC, CBD], drug presentation, administration route, outcomes measured, and adverse effects were described. 55 out of 71 papers were selected, 38 Randomized Clinical Trials[RCTs], and 17 Systematic Literature Reviews[SLRs], most focused in patients with Multiple Sclerosis (51/55;92.7%); Spasticity (29/55;52.7%), followed by pain (23/55;41.8%) were the primary outcomes. Sublingual route[spray] was used in half of the RCTs (19/38); Dizziness (14/19), vertigo (7/19), and dry-mouth (6/19) were the main ADRs described after the sublingual route. The ADRs overall risk, estimated with RR[95%CI] in patients with spasticity, ranged from 1.18[1.10-1.27] to 1.82[1.10-3.00], and estimated with OR[95%CI], ranged from 1.41[1.04-1.92] to 2.77[1.22-6.55]. The most favorable effects of cannabinoids were spasticity reduction, modulation of chronic pain, improvement of bladder function, and did not show a favorable effect on the quality of life. Finally, ADRs were primarily mild, reversible, and mainly affected the CNS (vertigo, dizziness, drowsiness, memory impairment, feeling of drunkenness, gait disturbance) and the gastrointestinal tract (dry mouth, nausea).
DOI: 10.5281/zenodo.15318916
title: Data Products for "Additional JWST/NIRSpec Transits of the Rocky M Dwarf Exoplanet GJ 1132 b Reveal a Featureless Spectrum"

description: Data products from "Additional JWST/NIRSpec Transits of the Rocky M Dwarf Exoplanet GJ 1132 b Reveal a Featureless Spectrum" by Bennett et al. (2025). 

This repository contains the following: 



Transmission Spectra: Reduced transmission spectra for all four observations as shown in Figures 3 and 4. Individual transit observations are included for each reduction pipeline (FIREFLy, Eureka!, and ExoTiC-JEDI) as well as weighted mean of all four visits, and the weighted mean of visits 2-4 (with Visit 1 excluded).

Stellar Spectra: Flux-calibrated stellar spectra for each individual observation, along with the respective best-fit PHOENIX model (as seen in Figure 5). 

Atmospheric Forward Models: All forward models used in Figure 6. 

Retrieval Results: Corners plots and results files for POSEIDON retrievals run for all reduction pipelines. Includes results using the weighted mean for all four visits as well as results using the weighted mean of visits 2-4 (with Visit 1 excluded).


For any additional questions or requests, please contact Katie Bennett at kbenne50@jhu.edu.
DOI: 10.5281/zenodo.15318917
title: Data Products for "Additional JWST/NIRSpec Transits of the Rocky M Dwarf Exoplanet GJ 1132 b Reveal a Featureless Spectrum"

description: Data products from "Additional JWST/NIRSpec Transits of the Rocky M Dwarf Exoplanet GJ 1132 b Reveal a Featureless Spectrum" by Bennett et al. (2025). 

This repository contains the following: 



Transmission Spectra: Reduced transmission spectra for all four observations as shown in Figures 3 and 4. Individual transit observations are included for each reduction pipeline (FIREFLy, Eureka!, and ExoTiC-JEDI) as well as weighted mean of all four visits, and the weighted mean of visits 2-4 (with Visit 1 excluded).

Stellar Spectra: Flux-calibrated stellar spectra for each individual observation, along with the respective best-fit PHOENIX model (as seen in Figure 5). 

Atmospheric Forward Models: All forward models used in Figure 6. 

Retrieval Results: Corners plots and results files for POSEIDON retrievals run for all reduction pipelines. Includes results using the weighted mean for all four visits as well as results using the weighted mean of visits 2-4 (with Visit 1 excluded).


For any additional questions or requests, please contact Katie Bennett at kbenne50@jhu.edu.
DOI: 10.7910/dvn/y2qsba
title: A98_10039.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/ae0d7079-a440-494c-84a8-4c3ebf1764cc'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/ae0d7079-a440-494c-84a8-4c3ebf1764cc
DOI: 10.7910/dvn/ovfjjr
title: A97_8475.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/4969d415-275b-441c-828d-b2a172f4c35a'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/4969d415-275b-441c-828d-b2a172f4c35a
DOI: 10.7910/dvn/mskdqq
title: Executive Agreements Database, Statement Concerning the Agreement with Panama Regarding the Status of United States Personnel Who May be Temporarily Present in Panama. Effected by Exchange of Notes Act Panama City April 2 and 24, 2008. Entered into force April 24, 2008.

description: KAV 8376 cover memo
DOI: 10.7910/dvn/tyfrk9
title: A91_4057.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/a20429e6-3155-d67e-b7a7-993954d5fae5'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/a20429e6-3155-d67e-b7a7-993954d5fae5
DOI: 10.7910/dvn/jnqjou
title: A08_16876.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/1bb112aa-c79c-831f-0213-2a1bd072bd8f'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/1bb112aa-c79c-831f-0213-2a1bd072bd8f
DOI: 10.7910/dvn/onuzld
title: A96_7858.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/fe9fe853-414a-b31f-7e66-6f29da5238c8'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/fe9fe853-414a-b31f-7e66-6f29da5238c8
DOI: 10.7910/dvn/otins6
title: CYP26

description: A qualitative model describing the inhibition of CYP26
DOI: 10.6084/m9.figshare.28912022
title: Video_1 S2A 10usLipiddisepersionXY

description: Video_1 S2A 10usLipiddisepersionXY
DOI: 10.7910/dvn/ozpklo
title: ReadMe_MIT_Libraries_Wunsch_Conservation_Lab_on_The_Intangible_Podcast_2023_Transcription

description: ReadMe_MIT_Libraries_Wunsch_Conservation_Lab_on_The_Intangible_Podcast_2023_Transcription
DOI: 10.7910/dvn/tz2hxu
title: A97_8495.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/1460cb34-3425-4940-91b0-9d14ece23ead'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/1460cb34-3425-4940-91b0-9d14ece23ead
DOI: 10.7910/dvn/j0dqsj
title: A10_18198.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/5ce649f0-9e4a-4fbc-88da-990b1bb23a21'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/5ce649f0-9e4a-4fbc-88da-990b1bb23a21
DOI: 10.7910/dvn/ytu6gk
title: Behavior Testing : Novel Object Recognition (NOR)

description: Videos and raw data related to novel object recognition test.
DOI: 10.7910/dvn/yrnbbg
title: Replication Data for "Reversing Sahelian Droughts" figures

description: The simulation input and output files required to reproduce the figures in the paper, “Reversing Sahelian droughts” can be found in these directories. 

The subcomponents of each figure and the scripts to generate them are located in the folder corresponding to each Figure number. 

The CESM simulation output files required to reproduce the figures are located in the directories named “Input_[Figure]”

Final descriptive simulation “short names” map to the shortnames in scripts and input files as follows:

Slab ocean (SOM) simulations:
ref_preind = 1xco2
ref_warm_world = 2xco2
io_cooled_strongly = t4Ind
io_cooled = t3Ind

SST prescribed simulations:
historical = cntrl
historical branch 1, historical branch 2 = historical-branch1, historical-branch2
drought_reverse = t4anom1, t4anom2, t4anom3

If you have any questions, please contact kricke@ucsd.edu for further information.
DOI: 10.7910/dvn/tkthpq
title: A00_13072.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/39502bbe-7ed9-e63b-9fa6-32eab61b7978'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/39502bbe-7ed9-e63b-9fa6-32eab61b7978
DOI: 10.7910/dvn/mnn8cn
title: A16_31089.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/3cec824e-60e1-451e-aaa8-32faf60c170d'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/3cec824e-60e1-451e-aaa8-32faf60c170d
DOI: 10.7910/dvn/opjbir
title: Ribosomal protein database of Carnobacterium divergens DSM 20623

description: This work presents the ribosomal protein database of Carnobacterium divergens DSM 20623. Original data for the work came from the annotated proteome data of the bacterium downloaded from UniProt. Using an in-house MATLAB ribosomal protein database analysis software, the original proteome data file was parsed to extract protein name and amino acid sequence of all ribosomal proteins in the species. The database also includes calculated variables such as number of residues, molecular weight, and nucleotide sequence. Overall, the presented database could serve as a ribosomal protein mass fingerprint for use in microbial identification, or it could be used in fundamental studies seeking to uncover new insights into ribosomal protein biology.
description: The author declares no conflicts of interest. No funding was used in this work.
DOI: 10.15468/dl.wyw4sc
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Plethodon pauleyi Felix, Wooten, Pierson & Camp, 2019)"
 ]
}

 The dataset includes 30 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010054-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/opwuqu
title: Executive Agreements Database, Statement Concerning the Agreement with Panama Regarding the Status Of United States Personnel Who May Be Temporarily Present In Panama Effected By Exchange Of Notes Act Panama June 16 and July 8, 2008 Entered Into Force July 8, 2008

description: KAV 8438 cover memo