cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/fm4m8kr6cz
title: Early experience of adopting a generative diffusion model for the synthesis of fundus photographs

description: This study was based on a publicly accessible and deidentified FP image database, which was released by a previous study. To reduce the noise of different borders, we selected FPs where all boundaries of the circular mask were intact. Finally, 1000 FPs were used to train the diffusion model. Therefore, this study was exempt from ethical review according to the guidelines by Korea National Institute for Bioethics Policy. All the procedures were performed in accordance with the ethical standards of the 1964 Declaration of Helsinki and its later amendments. 
As shown in Figure 1, we trained the DDPM based on U-Net backbone architecture, which is the most popular form of generative diffusion model. After training, serial multiple denoising U-Nets can generate FPs using random noise seeds. The input image size was set to a pixel resolution of 128 × 128. This was the maximum resolution required to finalize the proper training with our computational resources. We set the time step to the default value of 1000 because fewer numbers produce severely noisy or blurred synthetic images. All codes for the implementation of the DDPM are available on the webpage (https://github.com/lucidrains/denoising-diffusion-pytorch). For reproducibility, our FP images and modified codes, which can be implemented in Google Colaboratory, were released in the data repository.
DOI: 10.3535/a3c-xnl-atb
title: Acanthodii

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q4d-vyl-9en
title: Richmond meteorite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22829051.v1
title: Supplementary Materials_NBME-22-1647

description: Figures, Videos, and Source Data for the manuscript "In-ear integrated sensor array for the continuous monitoring of brain activity and of lactate in sweat".
DOI: 10.3535/2yl-qf0-w1t
title: Skolithos linearis (Haldeman, 1840)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/a9g-zpe-alz
title: Pyrite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rdw-x61-jp6
title: †Ungula ingrica (Eichwald, 1829)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23543243.v1
title: Additional file 1 of Comparative phylogenetic analysis and transcriptomic profiling of Dengue (DENV-3 genotype I) outbreak in 2021 in Bangladesh

description: Supplementary Material 1
DOI: 10.3535/bka-q8k-t55
title: Tuff

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cz4-mw9-r15
title: Sophora L.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vl4-f0z-prd
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12509831.v2
title: Data accompanying Singh et al 2020

description: Data accompanying: https://arxiv.org/abs/2001.08349<br>
DOI: 10.3535/2wn-qz4-e9v
title: Andesite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fcp-r53-pkt
title: marble

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cfm-w84-q32
title: †Maclurites Lesueur, 1818

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nhz-0y2-nnd
title: Gabbro

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/cnmh45zvv4
title: Coal industry

description: Coal industry after sanctions in Russia
DOI: 10.17632/gfsfmmpmf4
title: BIOENERGY IN SOUTH AMERICA: DIRECTIONS AND CHALLENGES FOR BIOFUELS

description: Biofuels have become a global interest for many private and public investors, since, in several European countries, bioenergy is considered a part of the energy matrix. However, South America is entering the same path, promoting and applying policies for the production of liquid and gaseous biofuels, so that they are developed in a more environmentally friendly way, have a social impact, and are economically sustainable. It could represent a strategic opportunity for the development of the entire southern continent’s energy matrix, in addition to the fact that biofuels can be an ally in the fight against climate change and stimulate economic development, reducing rural poverty and promoting more integrated and efficient agricultural systems. This work aims to demonstrate the existence of bioenergy in South America, its state of the art in the countries, updated information, production, use of biofuels, and also showing the policies applied throughout these years, to provide an information base.
DOI: 10.3535/4p1-1j2-xt5
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r44-brs-6c4
title: Volcanic ash

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.10031897.v1
title: Sample dataset for OnClass

description: Unifying single-cell annotations based on the Cell Ontology
DOI: 10.6084/m9.figshare.25772520.v1
title: Primers for dsRNA related topic （Kuruma shrimp）

description: This is supplementary data to the article (Double-strand RNA induces antiviral transcriptional response through the Dicer-2/AMPK/FoxO axis in an arthropod).
DOI: 10.3535/0fq-j61-rxj
title: Nerft meteorite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/20d-ajk-vtc
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16640938.v1
title: Additional file 1 of Methodology of optimisation for a nanostructured two-photon absorption photodetector

description: Additional file 1 Supplementary materials.
DOI: 10.3535/aq1-vw7-skj
title: Olenellus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mhr-v59-fwn
title: Tuff

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.17701214.v1
title: EEG Dataset for RSVP and P300 Speller Brain-Computer Interfaces

description: EEG dataset for subject 41
DOI: 10.6084/m9.figshare.23907711.v1
title: YFP_quenching_assay_data

description: Data for manuscript: Gain-of-function CFTR restores essential epithelial function with greater efficacy than wildtype or codon optimized CFTR when expressed in cystic fibrosis airway cells.
DOI: 10.6084/m9.figshare.28089736.v1
title: “A patent review on arachidonic acid lipoxygenase (LOX) inhibitors for the treatment of neurodegenerative diseases (2018-present)”

description: Neuroinflammation is correlated to neurodegenerative diseases like Alzheimer’s disease (AD), Amyotrophic Lateral Sclerosis (ALS), Multiple Sclerosis (MS), Huntington Disease (HD), and Parkinson’s disease (PD). A lot of recent research and patents are focused on the design and synthesis of arachidonic acid lipoxygenase (ALOX) inhibitors for the treatment of neurodegenerative diseases. The survey covers natural products, synthesis, hybrids, and assessments of biological effects in biological studies as ALOX inhibitors. A survey of patent publications from 2018 to present, taken from Google Scholar, Espanet, Web of Science, Drugbank, Scopus, or PubMed is analyzed. The authors suggest that (i) numerous areas of biology-pharmacology need to be considered: selectivity, in vivo studies, toxicity, bioavailability, and drug-likeness, the mechanism of action in different animals and humans, evaluation of more efficient and selective biological tests; (ii) synthetic method outbalance in the discovery and production of ALOX inhibitors with greater selectivity. Several ALOX inhibitors show promising results for the treatment of neurological disorders. Their clinical evaluation will be critical to assess therapeutic utility. The compounds for which the mechanism of action and their bioavailability are well defined can be used as lead compounds for the treatment of neurodegenerative diseases.
DOI: 10.6084/m9.figshare.28151984.v2
title: Adaptive Porous Microspheres Enable Fast, Secure, High-Capacity DNA Storage

description: This study presents a faster, safer, and higher-capacity solution for dynamic DNA storage, utilizing adaptive porous microspheres that can seamlessly switch between pore-closed and pore-open states.
DOI: 10.3535/9ad-5nc-z5k
title: Diplocraterion helmerseni (Öpik, 1929)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kd8-2pz-je3
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20222184.v1
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 119)

description: There are 17 files in this dataset. This is the 119th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20338818.v1
title: STAMPS 2022 atlas MGs output

description: Processed as described here: https://hackmd.io/@astrobiomike/STAMPS-2022-micro-div-MGs
DOI: 10.6084/m9.figshare.7605431.v1
title: run_time_boxplots.pdf

description: Boxplots summarising the run time of each tool,generated from the file run_time_and_memory.tsv.
DOI: 10.17632/766xx8kkj2
title: The Riegeom package: abstract tensor calculation

description: Abstract This paper describes a new package for abstract tensor calculation. Riegeom can efficiently simplify generic tensor expressions written in the indicial format. It addresses the problem of the cyclic symmetry and the dimension dependent relations of Riemann tensor polynomials. There are tools to manipulate tensors such as substitution and symmetrization functions. The main tensors of the Riemannian geometry have been implemented. The underlying algorithms are based on a precise mathematical fo... Title of program: Riegeom Catalogue Id: ADLM_v1_0 Nature of problem Simplification of tensor expressions and tensor manipulation in the indicial format. Useful for calculations in General Relativity and Riemannian Geometry. Versions of this program held in the CPC repository in Mendeley Data ADLM_v1_0; Riegeom; 10.1016/S0010-4655(99)00480-4 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.3535/ene-m07-crr
title: †Ungula ingrica (Eichwald, 1829)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/msb-rft-46j
title: Diplocraterion helmerseni (Öpik, 1929)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/jnpkbby43k
title: Data for: Neural representation of bat predation risk and evasive flight in moths: a modelling approach

description: All data for Goerlitz et al, J Theor Biol bat parameters, moth parameters, detection distances, buffer distances
DOI: 10.3535/1nk-1gd-snc
title: †Maclurites Lesueur, 1818

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kfh-d5q-h63
title: †Scenella Billings, 1872

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0d9-2hb-4xz
title: †Scenella Billings, 1872

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/73n-nm7-yfp
title: Basalt

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20995963.v1
title: The native mussel Mytilus chilensis genome reveals adaptative molecular signatures facing the marine environment

description: The blue mussel <em>Mytilus chilensis</em> is a key socioeconomic species inhabiting the southern coast of Chile. This endemic marine mussel supports a booming aquaculture industry, which entirely relies on artificially collected seeds from natural beds that are translocated to diverse physical-chemical ocean farming conditions. Furthermore, mussel production is threatened by a broad range of microorganisms, pollution, and environmental stressors that eventually impact its survival and growth. Herein, understanding the genomic basis of the local adaption is pivotal to developing sustainable shellfish aquaculture. We present a high-quality reference genome of <em>M. chilensis</em>, which is the first chromosome-level genome for a Mytilidae member in South America. The assembled genome size was 1.93 Gb, with a contig N50 of 134 Mb. Through Hi-C proximity ligation, 11,868 contigs were clustered, ordered, and assembled into 14 chromosomes in congruence with the karyological evidence. The <em>M. chilensis</em> genome comprises 34,530 genes and 4,795 non-coding RNAs. A total of 57% of the genome contains repetitive sequences with predominancy of LTR-retrotransposons and unknown elements. Comparative genome analysis was conducted among <em>M. chilensis</em> and <em>M. coruscus</em>, revealing genic rearrangements distributed into the whole genome. Notably, Steamer-like elements associated with horizontal transmissible cancer were explored in reference genomes, suggesting putative phylogenetic relationships at the chromosome level in Bivalvia. Genome expression analysis was also conducted, showing putative genomic differences between two ecologically different mussel populations. Collectively, the evidence suggests that local genome adaptation can be analyzed to develop sustainable mussel production. The genome of <em>M. chilensis</em> provides pivotal molecular knowledge for the <em>Mytilus</em>complex evolution and will help to understand how climate change can impact mussel biology.
DOI: 10.6084/m9.figshare.21228908.v1
title: Haze-BC-climate

description: Data for article
DOI: 10.6084/m9.figshare.3521666.v1
title: Full Archive

description: Full Archive
DOI: 10.17632/g6n2n67szt
title: Going deeper into plutonium sorption affected by redox

description: Data S1 includes sorption data for plutonium, uranium and thorium
DOI: 10.3535/xw8-x3n-1pq
title: Mollusca

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y4c-yqp-0dt
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tww-hqr-l3s
title: Tremataspis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20349134.v2
title: Diversity and ecology of <i>Salvia officinalis</i> communities in the Western Balkans

description: Vegetation diversity and ecology of grassland communities with <i>Salvia officinalis</i> were assessed in the natural range of the species in the Western Balkans, using the Braun-Blanquet approach. With the aim of defining the differences among the communities and identifying the main environmental gradients, cluster analysis (Flexible Beta method) and non-metric multidimensional scaling ordination were applied. From a total of 346 phytosociological relevés (259 relevés were used from the literature, and 87 new relevés were collected recently in Montenegro and the Middle Dalmatian Islands of Croatia), seventeen associations were identified. Three associations (<i>Brachypodio retusi-Salvietum officinalis</i>, <i>Salvietum brachyodonti-officinalis</i> and <i>Salvio officinalis-Phlomidetum fruticosae</i>) and one subassociation (<i>Stipo</i>-<i>Salvietum officinalis campanuletosum lingulatae</i>) were described for the first time. Most of the associations belong to the alliances <i>Saturejion subspicatae</i> and <i>Chrysopogono grylli-Koelerion splendentis</i>, separated along an altitudinal and thermal gradient. They were classified in the order <i>Koelerietalia splendentis</i> and in the class <i>Helianthemo cani-Seslerietea nitidae</i>, whose presence in the western Balkans is a syntaxonomic novelty. Three associations belong to three other vegetation classes, <i>Festuco-Brometea erecti</i>, <i>Lygeo sparti-Stipetea tenacissimae</i> and <i>Ononido-Rosmarinetea</i>.
DOI: 10.3535/1e1-ktn-17h
title: †Scenella Billings, 1872

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3b9-fj3-hxx
title: Diorite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yaa-pqe-cpx
title: Basalt

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11881194.v1
title: Genome sequence of Staphylococcus aureus SD1

description: This is a genome sequence (proteins) of a clinical isolate of S. aureus susceptible to daptomycin.
DOI: 10.6084/m9.figshare.6509984.v2
title: Blueschist-facies overprint of a Late Triassic Tethyan oceanic crust in a subduction-accretion complex in north-central Anatolia, Turkey

description: These supplementary materials are related to the paper entitled 'Blueschist-facies overprint of a Late Triassic Tethyan oceanic crust in a subduction-accretion complex in north-central Anatolia, Turkey'
DOI: 10.3535/h30-fxg-pv6
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12443495.v14
title: The human O-GlcNAcome database

description: This database is a manually curated list of all the <i>O</i>-GlcNAcylated human proteins known to date. For each protein is reported the <i>O</i>-GlcNAc site(s), reference(s) and technique(s) used to determine O-GlcNAc status and sites.Each protein is scored for <i>O</i>-GlcNAcylation based on publications, techniques and identification of sites.The search flowchart is attached.<br><br>
DOI: 10.3535/erm-y4d-qcn
title: Basalt

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ez0-phq-3xp
title: †Lophospira Whitfield, 1886

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pwb-34j-yzm
title: Krasnojarsk meteorite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3603458_d6.v1
title: MOESM6 of Composition and genomic organization of arthropod Hox clusters

description: Additional file 6: Table S2. Â  Calculated spatial relationship of Hox genes.
DOI: 10.17632/yktyfs9hrm
title: Data for 'Monopsony Rent Surcharges for SDG Financing: The Case of Japan'

description: The shortage of financial resources for achieving the Sustainable Development Goals (SDGs) is a serious issue. This study attempts to estimate the amount of monopsony rent surcharges which would be able to be imposed on large corporations in Japan as a financial resource for achieving SDGs. Using the dynamic pseudo-equilibrium approach and mathematical programming, the results show that the average total amount of monopsony rent of 5581 Japanese companies was 10,098.4 billion yen per year in the 2010s. Additionally, the sum of the corporate income tax rate and monopsony rent rate consistently remained at approximately 50% from 1980 to 2020, while the corporate income tax rate declined from approximately 44.7% to less than 27.9%. 

 These folders contain the data and programs used for the above estimation, and a brief explanation of them is given below. 
 You can obtain the results by loading the programs in the folder 'ExcelMacro&MatlabPrograms' while referring to the explanations from 1) to 7).

1) ExcelMacro&MatlabPrograms
This folder includes the program files available for Macro in Excel and MATLAB to do data processing, calculations, and processing of results. 

2) 1RawData
This folder includes the files that had been downloaded accounting data of Japanese listed companies from Nikkei Needs Financial Quest data base.

3) 2ProcessedData
They are the data files processed by loading the programs from 1 to 8 in dataprocessing.xlsb one by one. 

4) 3InputData
This folder includes the processed data after loading ReturntoScale2023L.m and processing the program 9 in dataprocessing.xlsb. They are input data for rent calculation by RentCal2023Japan.m.

5) 4Results
The rent calculation results by RentCal2023Japan.m are in the folder ‘4Results’. 

6) 5ProcessedResults
Macro 123, 13(Ave), 14(T), and 15(TS) in resultprocessing.xlsb were loaded to process the results of the calculation together with input data files to create summary tables of results.

7) Tables
 This folder includes the tables quoted in the manuscript which were created by data extracted from the files in ‘5ProcessedResults’.
DOI: 10.3535/b1v-hmc-kyt
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/p7rj439ff5
title: Data for: Impact of different play modes when using multitouch tabletops on group communication and motivation of primary school children

description: Paper: Impact of different interaction protocols on group communication and motivation of primary school children when using multitouch tabletops
DOI: 10.3535/c1x-w2j-hrn
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qc1-ezh-9r4
title: Amphorichnus papillatus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7s3-vsa-5wq
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/b1k-673-yk7
title: Conichnus conicus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1292887.v4
title: Parent talk and child language

description: It is commonly assumed that children's language is heavily influenced by parental language. I examine the evidence for this proposition.