cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14219575
title: Improved prediction of chemoresistance in patients with diffuse large B-cell lymphoma through a new interim positron emission tomography-computed tomography evaluation model

description: The positron emission tomography (PET) could predict the prognosis of DLBCL patients, but the exact procedure on interim PET (iPET) to determine chemoresistant patients remains elusive. We retrospectively analyzed 593 newly diagnosed DLBCL patients uniformly treated with R-CHOP regimen. Among them, 352 patients diagnosed from August 2010 to December 2016 were included in the test cohort and 241 patients diagnosed from January 2017 to December 2019 were included in the validation cohort. The iPET was evaluated with Deauville criteria and ΔSUVmax method. The reduction of maximal SUV between baseline and after 4 cycles of chemotherapy were defined as ΔSUVmax. The survival functions were depicted using the Kaplan–Meier method and compared with the log-rank test. Patients with iPET Deauville 4 had heterogeneous outcome and end of treatment complete response rates (eCRR). Combined Deauville with ΔSUVmax method, we proposed a modified-Deauville model: patients with Deauville 4 and ΔSUVmax &gt; 70%, as well as those with Deauville 1–3, were reclassified into the modified-Deauville negative group, while patients with Deauville 4 and ΔSUVmax ≤ 70%, as well as those with Deauville 5, into the modified-Deauville positive group. In the test cohort, 3-year PFS, OS and eCRR of modified-Deauville negative group were 80.2%, 89.9% and 91.8%, significantly higher than those of positive group (12.5%, 27.3% and 29.2%, <i>p</i> ≤ .001). Similar results were found in the validation cohort, that 3-year PFS, OS and eCRR were 87.8%, 95.4%, 96.3% in modified-Deauville negative group, and 27.4%, 32.5%, 13.5% in positive group. Through modified-Deauville model, patients in iPET positive group had very low eCRR and were resistant to conventional chemotherapy. The modified-Deauville model could better distinguish DLBCL patients with poor response to chemotherapy. Accordingly, these patients could be recognized early and provided with alternative therapeutic agents, which might improve the clinical outcome of refractory DLBCL patients.
DOI: 10.6084/m9.figshare.14219575.v1
title: Improved prediction of chemoresistance in patients with diffuse large B-cell lymphoma through a new interim positron emission tomography-computed tomography evaluation model

description: The positron emission tomography (PET) could predict the prognosis of DLBCL patients, but the exact procedure on interim PET (iPET) to determine chemoresistant patients remains elusive. We retrospectively analyzed 593 newly diagnosed DLBCL patients uniformly treated with R-CHOP regimen. Among them, 352 patients diagnosed from August 2010 to December 2016 were included in the test cohort and 241 patients diagnosed from January 2017 to December 2019 were included in the validation cohort. The iPET was evaluated with Deauville criteria and ΔSUVmax method. The reduction of maximal SUV between baseline and after 4 cycles of chemotherapy were defined as ΔSUVmax. The survival functions were depicted using the Kaplan–Meier method and compared with the log-rank test. Patients with iPET Deauville 4 had heterogeneous outcome and end of treatment complete response rates (eCRR). Combined Deauville with ΔSUVmax method, we proposed a modified-Deauville model: patients with Deauville 4 and ΔSUVmax &gt; 70%, as well as those with Deauville 1–3, were reclassified into the modified-Deauville negative group, while patients with Deauville 4 and ΔSUVmax ≤ 70%, as well as those with Deauville 5, into the modified-Deauville positive group. In the test cohort, 3-year PFS, OS and eCRR of modified-Deauville negative group were 80.2%, 89.9% and 91.8%, significantly higher than those of positive group (12.5%, 27.3% and 29.2%, <i>p</i> ≤ .001). Similar results were found in the validation cohort, that 3-year PFS, OS and eCRR were 87.8%, 95.4%, 96.3% in modified-Deauville negative group, and 27.4%, 32.5%, 13.5% in positive group. Through modified-Deauville model, patients in iPET positive group had very low eCRR and were resistant to conventional chemotherapy. The modified-Deauville model could better distinguish DLBCL patients with poor response to chemotherapy. Accordingly, these patients could be recognized early and provided with alternative therapeutic agents, which might improve the clinical outcome of refractory DLBCL patients.
DOI: 10.6084/m9.figshare.14219576.v1
title: Improved prediction of chemoresistance in patients with diffuse large B-cell lymphoma through a new interim positron emission tomography-computed tomography evaluation model

description: The positron emission tomography (PET) could predict the prognosis of DLBCL patients, but the exact procedure on interim PET (iPET) to determine chemoresistant patients remains elusive. We retrospectively analyzed 593 newly diagnosed DLBCL patients uniformly treated with R-CHOP regimen. Among them, 352 patients diagnosed from August 2010 to December 2016 were included in the test cohort and 241 patients diagnosed from January 2017 to December 2019 were included in the validation cohort. The iPET was evaluated with Deauville criteria and ΔSUVmax method. The reduction of maximal SUV between baseline and after 4 cycles of chemotherapy were defined as ΔSUVmax. The survival functions were depicted using the Kaplan–Meier method and compared with the log-rank test. Patients with iPET Deauville 4 had heterogeneous outcome and end of treatment complete response rates (eCRR). Combined Deauville with ΔSUVmax method, we proposed a modified-Deauville model: patients with Deauville 4 and ΔSUVmax &gt; 70%, as well as those with Deauville 1–3, were reclassified into the modified-Deauville negative group, while patients with Deauville 4 and ΔSUVmax ≤ 70%, as well as those with Deauville 5, into the modified-Deauville positive group. In the test cohort, 3-year PFS, OS and eCRR of modified-Deauville negative group were 80.2%, 89.9% and 91.8%, significantly higher than those of positive group (12.5%, 27.3% and 29.2%, <i>p</i> ≤ .001). Similar results were found in the validation cohort, that 3-year PFS, OS and eCRR were 87.8%, 95.4%, 96.3% in modified-Deauville negative group, and 27.4%, 32.5%, 13.5% in positive group. Through modified-Deauville model, patients in iPET positive group had very low eCRR and were resistant to conventional chemotherapy. The modified-Deauville model could better distinguish DLBCL patients with poor response to chemotherapy. Accordingly, these patients could be recognized early and provided with alternative therapeutic agents, which might improve the clinical outcome of refractory DLBCL patients.
DOI: 10.5281/zenodo.8047756
title: Assessing the Accuracy of 2-D Planetary Evolution Models against the 3-D Sphere

description: Datasets concerning isoviscous simulations:
Tables containing the time averaged (on the last 10% of the run) values for all the outputs and geometry studied. There is one table per Ra number with a given heating mode. In total there are 15 tables for each scenarios (i.e., three different heating modes and five different Ra numbers)


Datasets concerning temperature dependent simulations:
Tables containing the time averaged (on the last 10% of the run) values for all the outputs and geometry studied for temperature dependent viscosity simulations. Only one Ra is investigated. In total three tables, for three heating modes.


Datasets concerning thermal evolution simulations with and without crust:
Tables containing dimensional present day values of all the investigated outputs for different geometries and planet scenarios for cases with and without crust. In total six tables, for three planets.
DOI: 10.5281/zenodo.8047757
title: Assessing the Accuracy of 2-D Planetary Evolution Models against the 3-D Sphere

description: Datasets concerning isoviscous simulations:
Tables containing the time averaged (on the last 10% of the run) values for all the outputs and geometry studied. There is one table per Ra number with a given heating mode. In total there are 15 tables for each scenarios (i.e., three different heating modes and five different Ra numbers)


Datasets concerning temperature dependent simulations:
Tables containing the time averaged (on the last 10% of the run) values for all the outputs and geometry studied for temperature dependent viscosity simulations. Only one Ra is investigated. In total three tables, for three heating modes.


Datasets concerning thermal evolution simulations with and without crust:
Tables containing dimensional present day values of all the investigated outputs for different geometries and planet scenarios for cases with and without crust. In total six tables, for three planets.
DOI: 10.6084/m9.figshare.22604611
title: Additional file 1 of Genome-wide allele and haplotype-sharing patterns suggested one unique Hmong–Mein-related lineage and biological adaptation history in Southwest China

description: Additional file 1. Table S1. Z-scores of admixture-f3 in the form f3(X, Y; Miao_Longli). Table S2. Z-scores of admixture-f3 in the form f3(X, Y; Miao_Duyun). Table S3. Z-scores of admixture-f3 in the form f3(X, Y; Miao_Congjiang). Table S4. Z-scores of admixture-f3 in the form f3(X, Y; Miao_Nayong). Table S5. Results of f4-statistics in the form f4(Northern Han, Four Miao populations; reference populations, Mbuti). Table S6. Results of f4-statistics in the form f4(Han, Four Miao populations; reference populations, Mbuti). Table S7. Results of f4-statistics in the form f4(Miao_Congjiang, Four Miao populations; reference populations, Mbuti). Table S8. Two-way admixture models for the formation of Miao people. Table S9. Three-way admixture models for the formation of Miao people. Table S10. MALDER results showed the admixture times of Miao people.
DOI: 10.6084/m9.figshare.22604611.v1
title: Additional file 1 of Genome-wide allele and haplotype-sharing patterns suggested one unique Hmong–Mein-related lineage and biological adaptation history in Southwest China

description: Additional file 1. Table S1. Z-scores of admixture-f3 in the form f3(X, Y; Miao_Longli). Table S2. Z-scores of admixture-f3 in the form f3(X, Y; Miao_Duyun). Table S3. Z-scores of admixture-f3 in the form f3(X, Y; Miao_Congjiang). Table S4. Z-scores of admixture-f3 in the form f3(X, Y; Miao_Nayong). Table S5. Results of f4-statistics in the form f4(Northern Han, Four Miao populations; reference populations, Mbuti). Table S6. Results of f4-statistics in the form f4(Han, Four Miao populations; reference populations, Mbuti). Table S7. Results of f4-statistics in the form f4(Miao_Congjiang, Four Miao populations; reference populations, Mbuti). Table S8. Two-way admixture models for the formation of Miao people. Table S9. Three-way admixture models for the formation of Miao people. Table S10. MALDER results showed the admixture times of Miao people.
DOI: 10.15129/f9be75b4-4d2c-4d0f-9795-e660d9912735
title: Data for: "Unbiased Discovery of Dynamic Peptide-ATP Complexes"

description: Supporting Information for the related publication "Unbiased Discovery of Dynamic Peptide-ATP Complexes".
DOI: 10.5281/zenodo.10262094
title: Suppl. Data for AKI-to-CKD_human-mouse

description: Suppl. Data for AKI-to-CKD_human-mouse
DOI: 10.5281/zenodo.10262095
title: Suppl. Data for AKI-to-CKD_human-mouse

description: Suppl. Data for AKI-to-CKD_human-mouse
DOI: 10.5281/zenodo.10269220
title: Suppl. Data for AKI-to-CKD_human-mouse

description: Suppl. Data for AKI-to-CKD_human-mouse
DOI: 10.5281/zenodo.10512855
title: Suppl. Data for AKI-to-CKD_human-mouse

description: Suppl. Data for AKI-to-CKD_human-mouse
DOI: 10.6084/m9.figshare.22608086.v1
title: Additional file 3 of Proteomic Analysis of Protective Effects of Dl-3-n-Butylphthalide against mpp + -Induced Toxicity via downregulating P53 pathway in N2A Cells

description: Additional file 3.
DOI: 10.6084/m9.figshare.22608089
title: Additional file 4 of Proteomic Analysis of Protective Effects of Dl-3-n-Butylphthalide against mpp + -Induced Toxicity via downregulating P53 pathway in N2A Cells

description: Additional file 4.
DOI: 10.5066/p1bq48w3
title: Louisiana Outer Coast Restoration Project – 2022 habitat map, Shell Island

description: This data release includes 2022 data for the Louisiana Outer Coast Restoration Project for Shell Island. Specifically, this data release includes a detailed habitat map, general habitat map, and georeferenced imagery. These habitat maps are developed using the methods and classification scheme from Louisiana Coastal Protection and Restoration Authority’s (CPRA) Barrier Island Comprehensive Monitoring (BICM) program. For more details on BICM habitat classes, see the Entity and Attribute Information section of the metadata. Please consult the accompanying readME.txt file for information and recommendations on the contents of this dataset (that is, dataset and recommended symbology). For more information about BICM habitat mapping, see Enwright and others (2020).

References:
Enwright, N.M., SooHoo, W.M., Dugas, J.L., Conzelmann, C.P., Laurenzano, C., Lee, D.M., Mouton, K., and Stelly, S.J., 2020, Louisiana Barrier Island Comprehensive Monitoring Program—Mapping habitats in beach, dune, and intertidal environments along the Louisiana Gulf of Mexico shoreline, 2008 and 2015–16: U.S. Geological Survey Open-File Report 2020–1030, 57 p., https://doi.org/10.3133/ofr20201030.
DOI: 10.6084/m9.figshare.22608145
title: Additional file 1 of Investigating the molecular mechanisms of delirium-like neuropsychiatric disorder induced by electromagnetic pulse based on bioinformatics analysis

description: Additional file 1. Differentially expressed lncRNAs between the EMP and the sham group.
DOI: 10.6084/m9.figshare.22608145.v1
title: Additional file 1 of Investigating the molecular mechanisms of delirium-like neuropsychiatric disorder induced by electromagnetic pulse based on bioinformatics analysis

description: Additional file 1. Differentially expressed lncRNAs between the EMP and the sham group.
DOI: 10.6084/m9.figshare.22608151
title: Additional file 3 of Investigating the molecular mechanisms of delirium-like neuropsychiatric disorder induced by electromagnetic pulse based on bioinformatics analysis

description: Additional file 3. The detailed information of the differentially expressed lncRNA-mRNA pairs.
DOI: 10.6084/m9.figshare.22608151.v1
title: Additional file 3 of Investigating the molecular mechanisms of delirium-like neuropsychiatric disorder induced by electromagnetic pulse based on bioinformatics analysis

description: Additional file 3. The detailed information of the differentially expressed lncRNA-mRNA pairs.
DOI: 10.57841/casdc.0003355
title: 认知队列数据
DOI: 10.6084/m9.figshare.14219576
title: Improved prediction of chemoresistance in patients with diffuse large B-cell lymphoma through a new interim positron emission tomography-computed tomography evaluation model

description: The positron emission tomography (PET) could predict the prognosis of DLBCL patients, but the exact procedure on interim PET (iPET) to determine chemoresistant patients remains elusive. We retrospectively analyzed 593 newly diagnosed DLBCL patients uniformly treated with R-CHOP regimen. Among them, 352 patients diagnosed from August 2010 to December 2016 were included in the test cohort and 241 patients diagnosed from January 2017 to December 2019 were included in the validation cohort. The iPET was evaluated with Deauville criteria and ΔSUVmax method. The reduction of maximal SUV between baseline and after 4 cycles of chemotherapy were defined as ΔSUVmax. The survival functions were depicted using the Kaplan–Meier method and compared with the log-rank test. Patients with iPET Deauville 4 had heterogeneous outcome and end of treatment complete response rates (eCRR). Combined Deauville with ΔSUVmax method, we proposed a modified-Deauville model: patients with Deauville 4 and ΔSUVmax &gt; 70%, as well as those with Deauville 1–3, were reclassified into the modified-Deauville negative group, while patients with Deauville 4 and ΔSUVmax ≤ 70%, as well as those with Deauville 5, into the modified-Deauville positive group. In the test cohort, 3-year PFS, OS and eCRR of modified-Deauville negative group were 80.2%, 89.9% and 91.8%, significantly higher than those of positive group (12.5%, 27.3% and 29.2%, <i>p</i> ≤ .001). Similar results were found in the validation cohort, that 3-year PFS, OS and eCRR were 87.8%, 95.4%, 96.3% in modified-Deauville negative group, and 27.4%, 32.5%, 13.5% in positive group. Through modified-Deauville model, patients in iPET positive group had very low eCRR and were resistant to conventional chemotherapy. The modified-Deauville model could better distinguish DLBCL patients with poor response to chemotherapy. Accordingly, these patients could be recognized early and provided with alternative therapeutic agents, which might improve the clinical outcome of refractory DLBCL patients.
DOI: 10.6084/m9.figshare.22608184
title: Additional file 2 of Investigating associations between blood metabolites, later life brain imaging measures, and genetic risk for Alzheimer’s disease

description: Additional file 2: Supplementary file 2: Table 2. Full module analysis results (models 1-3).
DOI: 10.15156/bio/sh157162.07fu
title: SH157162.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh157163.07fu
title: SH157163.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh157164.07fu
title: SH157164.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh157165.07fu
title: SH157165.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh157166.07fu
title: SH157166.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh157167.07fu
title: SH157167.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.