cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15250091
title: Dataset for Towards Understanding Performance Bugs in Popular Data Science Libraries

description: In our paper, we conducted a large-scale empirical study to characterize performance bugs in seven popular data science libraries.

We identified 202 performance bugs. By analyzing these bugs (including bug description, patches, and project development history), we analyzed their impacts, proposed a taxonomy of the root causes and summarized three challenges for locating root causes and four challenges for fixing these performance bugs.

We found there are about 20% of fixes has LOC not larger than 10, which indicates they can be fixed through simple changes. We then manually checked the patch and found several fixing strategies with small LOC that can be automated. We believe that this study can facilitate future research and the development of data science ecosystems. Both data science libraries' developers and users can receive useful guidance from our study.


This dataset contains 202 performance bugs in data science core libraries, and their impacts, root causes, location and fixing challenge, and fixing strategy.

Our replication package consists of three main folders:RQ1&2_Impacts_and_Root_Causes, RQ3_Root_Causes_Locating_Fixing_Effort_Challenge and RQ4_Fixing_Strategy.


RQ1&2_Impacts_and_Root_Causes


In this folder we first placed the identified impact (Explicit and Implicit). Then we gave the identified symptoms and root cause taxonomy. In each file (corresponding to each iteration), we provided the repo name, issue number, and the label (symptom and root cause).


RQ3_Root_Causes_Locating_Fixing_Effort_Challenge


The challenge in locating and fixing these bugs in data science libraries are identified here.


RQ4_Fixing_Strategy


We provided the identified fixing strategy with small LOC. In the file, we provided the repo name, issue number, and the label (fixing strategy).
DOI: 10.5281/zenodo.15250092
title: Dataset for Towards Understanding Performance Bugs in Popular Data Science Libraries

description: In our paper, we conducted a large-scale empirical study to characterize performance bugs in seven popular data science libraries.

We identified 202 performance bugs. By analyzing these bugs (including bug description, patches, and project development history), we analyzed their impacts, proposed a taxonomy of the root causes and summarized three challenges for locating root causes and four challenges for fixing these performance bugs.

We found there are about 20% of fixes has LOC not larger than 10, which indicates they can be fixed through simple changes. We then manually checked the patch and found several fixing strategies with small LOC that can be automated. We believe that this study can facilitate future research and the development of data science ecosystems. Both data science libraries' developers and users can receive useful guidance from our study.


This dataset contains 202 performance bugs in data science core libraries, and their impacts, root causes, location and fixing challenge, and fixing strategy.

Our replication package consists of three main folders:RQ1&2_Impacts_and_Root_Causes, RQ3_Root_Causes_Locating_Fixing_Effort_Challenge and RQ4_Fixing_Strategy.


RQ1&2_Impacts_and_Root_Causes


In this folder we first placed the identified impact (Explicit and Implicit). Then we gave the identified symptoms and root cause taxonomy. In each file (corresponding to each iteration), we provided the repo name, issue number, and the label (symptom and root cause).


RQ3_Root_Causes_Locating_Fixing_Effort_Challenge


The challenge in locating and fixing these bugs in data science libraries are identified here.


RQ4_Fixing_Strategy


We provided the identified fixing strategy with small LOC. In the file, we provided the repo name, issue number, and the label (fixing strategy).
DOI: 10.15468/dl.x4w43a
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Herpestes javanicus",
 "Country is Saint Kitts and Nevis",
 "HasCoordinate is true"
 ]
}

 The dataset includes 32 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045948-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xx2mad
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tapinoma melanocephalum",
 "Country is Saudi Arabia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045949-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qfxpm
title: Occurrence Download

description: A dataset containing 16861 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rissa tridactyla",
 "MediaType is Image"
 ]
}

 The dataset includes 16861 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045950-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmfgq4
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "Geometry POLYGON((10.333 50,10.5 50,10.5 50.1,10.333 50.1,10.333 50))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Heracleum mantegazzianum",
 "Year 1977-2020"
 ]
}

 The dataset includes 15 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045951-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mkm48e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trichomycterus bomboizanus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045952-250717081556266/datasets/export for details.
DOI: 10.15468/dl.58myhx
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tapinoma melanocephalum",
 "Country is Solomon Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 85 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045953-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.be7up9
title: Occurrence Download

description: A dataset containing 1761 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhinolophus hipposideros",
 "MediaType is Image"
 ]
}

 The dataset includes 1761 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045954-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7hqkt
title: Occurrence Download

description: A dataset containing 274418 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anthus spinoletta)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 274418 records from 882 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045918-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bd2sh5
title: Occurrence Download

description: A dataset containing 26978 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Riparia riparia",
 "MediaType is Image"
 ]
}

 The dataset includes 26978 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045955-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4xg8ky
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tapinoma melanocephalum",
 "Country is Somalia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045956-250717081556266/datasets/export for details.
DOI: 10.15468/dl.cxvdbq
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chenopodium urbicum",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045957-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aee83b
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Changnienia amoena"
 ]
}

 The dataset includes 42 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045958-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15242142
title: Files: The sequence of a complete bacteriophage (DgiS1ag)

description: Files:



Assemblies: Acinetobacter guillouiae and Rickettsia (fna files).

Kraken: Results from kraken 2 (tgz files).

Mummer: Results from MUMmer and R script to visualize them (R and delta files).

Perl script: Script for taxa assignment of contigs from eggNOG-mapper annotation (pl file).
DOI: 10.5281/zenodo.15247309
title: Files: The sequence of a complete bacteriophage (DgiS1ag)

description: Files:



Assemblies: Acinetobacter guillouiae and Rickettsia (fna files).

Kraken: Results from kraken 2 (tgz files).

Mummer: Results from MUMmer and R script to visualize them (R and delta files).

Perl script: Script for taxa assignment of contigs from eggNOG-mapper annotation (pl file).
DOI: 10.15468/dl.m4pbtc
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tapinoma melanocephalum",
 "Country is Tanzania, United Republic of",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045959-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48564/unibafd-53x0k-zxv69
title: The Laki variety of Harsin

description: This corpus contains sound files (as WAV) and transcriptions (as PDF) of texts in the Laki variety of Harsin as documented by Sara Belelli in her dissertation (Belelli 2021). It contains a selection of seven texts recorded between the 10th of January 2014 (20th of Dey 1392) and the 27th of February 2014 (8th of Esfand 1392) in the city of Harsin.

Citation



Belelli, Sara. 2021. The Laki variety of Harsin: Corpus and sound files. Bamberg: University of Bamberg. (DOI: 10.48564/unibafd-53x0k-zxv69) (date accessed)
DOI: 10.48564/unibafd-5ny05-56352
title: The Laki variety of Harsin

description: This corpus contains sound files (as WAV) and transcriptions (as PDF) of texts in the Laki variety of Harsin as documented by Sara Belelli in her dissertation (Belelli 2021). It contains a selection of seven texts recorded between the 10th of January 2014 (20th of Dey 1392) and the 27th of February 2014 (8th of Esfand 1392) in the city of Harsin.

Citation



Belelli, Sara. 2021. The Laki variety of Harsin: Corpus and sound files. Bamberg: University of Bamberg. (DOI: 10.48564/unibafd-53x0k-zxv69) (date accessed)
DOI: 10.15468/dl.qdcb8p
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pantherophis guttatus",
 "Country is Bahamas",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045960-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c84ma4
title: Occurrence Download

description: A dataset containing 169507 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Chlidonias hybrida)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 169507 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045929-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvtfkj
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dorstenia poinsettifolia longicauda"
 ]
}

 The dataset includes 44 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045962-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hdndsw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lates longispinis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045963-250717081556266/datasets/export for details.
DOI: 10.15468/dl.uf3n2g
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tapinoma melanocephalum",
 "Country is Tonga",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045964-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48564/unibafd-ft675-b3y16
title: The Corpus of Contemporary Kurdish Newspaper Texts

description: The CCKNT comprises written Northern Kurdish (Kurmanjî) journalistic texts, compiled from online newspaper texts in 1999. The corpus consists of 483 texts, totalling around 214 000 words. It contains texts from two Kurdish publications: Azadiya Welat, a weekly Kurdish newspaper, and CTV, a company that broadcasts news items in Kurdish on the internet. The texts are not tagged or translated.

The corpus was compiled as part of a project on modern Kurdish syntax, conducted from 1999–2001 at the Seminar für Allgemeine und Vergleichende Sprachwissenschaft at the University of Kiel.

 

Citation



Haig, Geoffrey. 2001. The Corpus of Contemporary Kurdish Newspaper Texts (CCKNT). Kiel: University of Kiel. (DOI: 10.48564/unibafd-v6rmw-cx940) (date accessed)
DOI: 10.48564/unibafd-v6rmw-cx940
title: The Corpus of Contemporary Kurdish Newspaper Texts

description: The CCKNT comprises written Northern Kurdish (Kurmanjî) journalistic texts, compiled from online newspaper texts in 1999. The corpus consists of 483 texts, totalling around 214 000 words. It contains texts from two Kurdish publications: Azadiya Welat, a weekly Kurdish newspaper, and CTV, a company that broadcasts news items in Kurdish on the internet. The texts are not tagged or translated.

The corpus was compiled as part of a project on modern Kurdish syntax, conducted from 1999–2001 at the Seminar für Allgemeine und Vergleichende Sprachwissenschaft at the University of Kiel.

 

Citation



Haig, Geoffrey. 2001. The Corpus of Contemporary Kurdish Newspaper Texts (CCKNT). Kiel: University of Kiel. (DOI: 10.48564/unibafd-v6rmw-cx940) (date accessed)
DOI: 10.15468/dl.mxbyqu
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Caliphylla mediterranea"
 ]
}

 The dataset includes 35 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045966-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34943/7a15410e-5a59-4d2e-9afc-13e4d82274ef
title: ODP 1027C Circulation Obviation Retrofit Kit Deployed 2018-06-24

description: The CORK P (1027C) was deployed on 2018-06-24 at ODP 1027C. ODP 1027C is a borehole site used to pinpoint an area within Cascadia Basin. This device is a Circulation Obviation Retrofit Kit. Circulation Obviation Retrofit Kit (CORK) instruments seal the top of boreholes, to prevent circulation between the open hole and the ocean bottom water. CORKs monitor subseafloor hydrology by collecting in-situ pressure and temperature measurements from the formation deep below the seafloor. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/318cbff4-ff29-46c4-8690-b8d89bfa074f
title: ODP 1027C Circulation Obviation Retrofit Kit Deployed 2018-06-24

description: The CORK P (1027C) was deployed on 2018-06-24 at ODP 1027C. ODP 1027C is a borehole site used to pinpoint an area within Cascadia Basin. This device is a Circulation Obviation Retrofit Kit. Circulation Obviation Retrofit Kit (CORK) instruments seal the top of boreholes, to prevent circulation between the open hole and the ocean bottom water. CORKs monitor subseafloor hydrology by collecting in-situ pressure and temperature measurements from the formation deep below the seafloor. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.6084/m9.figshare.29616800.v1
title: Distribution of larval habitats and efficiency of various trap settings for sympatric <i>Aedes albopictus</i> and <i>Aedes aegypti</i> in LaReunion

description: Two <i>Aedes</i> mosquitoes, vectors of dengue and chikungunya viruses, are found in Saint-Joseph (La Reunion): <i>Aedes albopictus</i> (the most widespread and abundant) and <i>Aedes aegypti</i>, with contrasted ecology. This study aimed to prepare a boosted sterile insect technique control trial using sterile male <i>Aedes albopictus</i> treated with a larval biocide. We assessed the efficacy of two mosquito traps to catch these two species. Also, we investigated which breeding sites they share. Using a standard comparison procedure, we showed that BG Sentinel adult traps baited with bottled carbon dioxide were equally attractive for both species. The survey of breeding sites showed that Aedes aegypti can be found in vacoas (<i>Pandanus utilis</i>) located several hundred meters away from ravines. However, larvae of <i>Aedes albopictus</i> were found in most vacoas, thus reassuring that targeting this species in the control program would also allow to suppress <i>Aedes aegpti</i> populations
DOI: 10.57830/2314003
title: UPDE Trail of Geology

description: This Story Map of UPDE Trail of Geology provides a virtual tour of geological features along the Upper Delaware Scenic and Recreational River. The map provides information on landmarks within the Upper Delaware Scenic and Recreational River corridor such as the Hawk's Nest cliffs, the Big Eddy Narrows, the Skinners Falls rapids, Jensens Ledges, and Point Mountain.  


In 1978 Congress designated the Upper Delaware Scenic and Recreational River (UPDE) as a unit of the National Wild and Scenic Rivers System.  Forming part of the Pennsylvania (PA) - New York (NY) border, the Upper Delaware Scenic and Recreational River flows approximately 73.3 river miles across two states, five counties, and fifteen municipalities.  The UPDE river corridor is an area of natural and scenic beauty.  Rural in nature, the Upper Delaware is covered by a mix of deciduous and coniferous forests.  Small communities (hamlets) and agricultural areas dot the landscape.  As one of the largest undammed waterways in the eastern United States, the river provides high-quality water, ecologic diversity and integrity, and many recreational opportunities.
DOI: 10.57783/8tg3-6062
title: Automated Grain Boundary Detection via U-Net: Images

description: This repository contains the images used for the article available at: 

https://doi.org/10.1093/micmic/ozad115

Please cite as: 
MJ Patrick, JK Eckstein, JR Lopez, S Toderas, SA Asher, SI Whang, S Levine, JM Rickman, K Barmak, "Automated Grain Boundary Detection for Bright-Field Transmission Electron Microscopy Images via U-Net", Microsc. Microanal. 29 (2023) 1968–1979, https://doi.org/10.1093/micmic/ozad115

The data here consist of bright-field TEM micrographs of aluminum thin films, hand labels, and automated tracings. The test data was collected on the Columbia Nano Initiative Electron Microscopy's FEI Talos F200X S/TEM.
DOI: 10.57783/01q1-ka82
title: Automated Grain Boundary Detection via U-Net: Images

description: This repository contains the images used for the article available at: 

https://doi.org/10.1093/micmic/ozad115

Please cite as: 
MJ Patrick, JK Eckstein, JR Lopez, S Toderas, SA Asher, SI Whang, S Levine, JM Rickman, K Barmak, "Automated Grain Boundary Detection for Bright-Field Transmission Electron Microscopy Images via U-Net", Microsc. Microanal. 29 (2023) 1968–1979, https://doi.org/10.1093/micmic/ozad115

The data here consist of bright-field TEM micrographs of aluminum thin films, hand labels, and automated tracings. The test data was collected on the Columbia Nano Initiative Electron Microscopy's FEI Talos F200X S/TEM.