cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive1658.20170829.2
title: Methylocella silvestris Dunfield et al. 2003

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive1659.20170829.2
title: Methylocella tundrae Dedysh et al. 2004

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive1660.20170829.2
title: Beijerinckia derxii subsp. derxii (Tchan 1957) Thompson and Skerman 1981

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive1661.20170829.2
title: Beijerinckia derxii subsp. derxii (Tchan 1957) Thompson and Skerman 1981

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive2634.20170829.2
title: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive2635.20170829.2
title: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive2636.20170829.2
title: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive2637.20170829.2
title: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive2638.20170829.2
title: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive2639.20170829.2
title: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive2640.20170829.2
title: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive2641.20170829.2
title: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive2642.20170829.2
title: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive2643.20170829.2
title: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive3383.20170829.2
title: Cystobacter velatus Reichenbach 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive3384.20170829.2
title: Cystobacter velatus Reichenbach 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive3385.20170829.2
title: Cystobacter velatus Reichenbach 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive3386.20170829.2
title: Cystobacter velatus Reichenbach 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive3387.20170829.2
title: Cystobacter velatus Reichenbach 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive3388.20170829.2
title: Cystobacter velatus Reichenbach 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive3389.20170829.2
title: Cystobacter velatus Reichenbach 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4122.20170829.2
title: Desulfovibrio desulfuricans (Beijerinck 1895) Kluyver and van Niel 1936

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4123.20170829.2
title: Desulfovibrio vietnamensis Dang et al. 2002

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4124.20170829.2
title: Desulfovibrio aespoeensis Motamedi and Pedersen 1998

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4125.20170829.2
title: Desulfovibrio gabonensis Tardy-Jacquenod et al. 1996

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4126.20170829.2
title: Desulfovibrio acrylicus van der Maarel et al. 1997

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4127.20170829.2
title: Desulfovibrio acrylicus van der Maarel et al. 1997

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4128.20170829.2
title: Desulfovibrio intestinalis Fröhlich et al. 1999

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4937.20170829.2
title: Hafnia alvei Moller 1954

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4938.20170829.2
title: Hafnia alvei Moller 1954

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4939.20170829.2
title: Hafnia paralvei Huys et al. 2010

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4940.20170829.2
title: Klebsiella oxytoca (Flügge 1886) Lautrop 1956

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4941.20170829.2
title: Klebsiella oxytoca (Flügge 1886) Lautrop 1956

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4942.20170829.2
title: Klebsiella oxytoca (Flügge 1886) Lautrop 1956

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4943.20170829.2
title: Klebsiella oxytoca (Flügge 1886) Lautrop 1956

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4944.20170829.2
title: Klebsiella oxytoca (Flügge 1886) Lautrop 1956

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive4945.20170829.2
title: Klebsiella oxytoca (Flügge 1886) Lautrop 1956

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5761.20170829.2
title: Fusobacterium nucleatum subsp. polymorphum (ex Knorr 1922) Dzink et al. 1990

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5762.20170829.2
title: Fusobacterium nucleatum subsp. animalis Gharbia and Shah 1992

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5763.20170829.2
title: Fusobacterium nucleatum subsp. vincentii (ex Knorr 1922) Dzink et al. 1990

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5764.20170829.2
title: Fusobacterium sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5765.20170829.2
title: Fusobacterium nucleatum subsp. nucleatum Knorr 1922

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5766.20170829.2
title: Fusobacterium canifelinum Conrads et al. 2004

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5767.20170829.2
title: Fusobacterium canifelinum Conrads et al. 2004

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5768.20170829.2
title: Fusobacterium equinum Dorsch et al. 2001

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.6084/m9.figshare.13294411
title: Additional file 9 of Genomics and lipidomics analysis of the biotechnologically important oleaginous red yeast Rhodotorula glutinis ZHK provides new insights into its lipid and carotenoid metabolism

description: Additional file 9. Ka/Ks results of single-copy orthologous genes.
DOI: 10.6084/m9.figshare.13294399
title: Additional file 5 of Genomics and lipidomics analysis of the biotechnologically important oleaginous red yeast Rhodotorula glutinis ZHK provides new insights into its lipid and carotenoid metabolism

description: Additional file 5. All the genes involved in the biosynthesis of antibiotics in the ZHK genome.
DOI: 10.6084/m9.figshare.16964842
title: Contribution of plant–bacteria interactions to horizontal gene transfer in plants

description: Horizontal gene transfer (HGT) is recognized as a major driver of adaptive evolution in prokaryotes. However, HGT seems impossible in eukaryotes, particularly as recipients; therefore, debate rages regarding whether HGT takes place in eukaryotes, in addition to its potential mechanism or frequency. Bacterial symbionts, whether mutualistic, commensalistic or parasitic, have been considered potential donors for eukaryotes. In this study, we used a bacterial–plant interaction system to systematically investigate HGT in plants. In total, 373 HGT events were identified based on a pipeline procedure, and 90 HGTs were confirmed as true events, with 27.27%–86.5% sequence similarities. We propose that both ancient transfer and recent specific transfer (e.g. Agrobacteria) occurred in the course of plant evolution. The most enriched functional categories of the HGTs were metabolism processes of amino acids, cofactors and vitamins, and carbohydrates, and genetic information processing. Donor bacterial genera were significantly enriched in plant-associated bacterial groups, which indicated that plant–bacterial interaction facilitates HGT in plants. No clade- or species-specific HGTs were detected, and all occurred anciently during the origin of angiosperm plants. In addition, we identified 309 ‘one-species’ HGT events, and as expected, all the events could be accounted for as sequence errors or inaccurate annotations.
DOI: 10.6084/m9.figshare.13294381.v1
title: Additional file 11 of Genomics and lipidomics analysis of the biotechnologically important oleaginous red yeast Rhodotorula glutinis ZHK provides new insights into its lipid and carotenoid metabolism

description: Additional file 11. CDS/cDNA sequences resulted from genome analysis.
DOI: 10.6084/m9.figshare.19579954
title: Additional file 4 of Influence of the geometric and material properties of lumbar endplate on lumbar interbody fusion failure: a systematic review

description: Additional file 4. Available data of patients involved in included studies.
DOI: 10.6084/m9.figshare.20110563
title: Additional file 1 of Transcriptome study digs out BMP2 involved in adipogenesis in sheep tails

description: Additional file 1.
DOI: 10.6084/m9.figshare.19579954.v1
title: Additional file 4 of Influence of the geometric and material properties of lumbar endplate on lumbar interbody fusion failure: a systematic review

description: Additional file 4. Available data of patients involved in included studies.
DOI: 10.6084/m9.figshare.25211728
title: Assessment of the Relationship Between Genetic Determinants of Obesity, Unhealthy Eating Habits and Chronic Obstructive Pulmonary Disease: A Mendelian Randomisation Study

description: <b>Background:</b> Clinical studies have shown that the onset and exacerbation of chronic obstructive pulmonary disease (COPD) are related to obesity and dietary behaviours, but the genetic relationship between them is not clear. <b>Aims:</b> To investigate the relationship between the genetic determinants of obesity, dietary habits (alcohol consumption, intake of sweets, salt intake) and COPD. <b>Methods:</b> Exposure and outcome datasets were obtained from the IEU Open GWAS project. The exposure dataset includes dietary habits (Salt added to food, Sweets intake, Alcohol consumption), obesity level (represented by body mass index (BMI) and body fat percentage (BFP) data sets.). The outcome dataset includes COPD and acute COPD admissions. The collected data were imported into the RStudio software and conducted Mendelian randomisation analysis. Additionally, heterogeneity and horizontal pleiotropy tests were conducted on the data to ensure the veracity of the results. <b>Results:</b> The results showed that BMI was positively correlated with the risk of acute COPD admission (OR = 1.74, 95% CI 1.39–2.18) and COPD (OR = 1.81, 95%CI 1.41–2.33). In addition, BFP was also a risk factor for COPD (OR = 1.98, 95% CI 1.42–2.77) and acute exacerbation of COPD admission (OR = 1.99, 95%CI 1.43–2.77). The increase of salt, sugar and alcohol consumption will not increase the risk of COPD and the risk of hospitalisation due to COPD. <b>Conclusion:</b> Therefore, we should strengthen the guidance of diet and living habits of obese patients. For patients with heavier weight and higher body fat rate, they should be instructed to lose weight and fat to prevent the occurrence of COPD. For obese patients with COPD, more attention should be paid to prevent the occurrence of acute exacerbation of COPD in advance.
DOI: 10.6084/m9.figshare.25211728.v1
title: Assessment of the Relationship Between Genetic Determinants of Obesity, Unhealthy Eating Habits and Chronic Obstructive Pulmonary Disease: A Mendelian Randomisation Study

description: <b>Background:</b> Clinical studies have shown that the onset and exacerbation of chronic obstructive pulmonary disease (COPD) are related to obesity and dietary behaviours, but the genetic relationship between them is not clear. <b>Aims:</b> To investigate the relationship between the genetic determinants of obesity, dietary habits (alcohol consumption, intake of sweets, salt intake) and COPD. <b>Methods:</b> Exposure and outcome datasets were obtained from the IEU Open GWAS project. The exposure dataset includes dietary habits (Salt added to food, Sweets intake, Alcohol consumption), obesity level (represented by body mass index (BMI) and body fat percentage (BFP) data sets.). The outcome dataset includes COPD and acute COPD admissions. The collected data were imported into the RStudio software and conducted Mendelian randomisation analysis. Additionally, heterogeneity and horizontal pleiotropy tests were conducted on the data to ensure the veracity of the results. <b>Results:</b> The results showed that BMI was positively correlated with the risk of acute COPD admission (OR = 1.74, 95% CI 1.39–2.18) and COPD (OR = 1.81, 95%CI 1.41–2.33). In addition, BFP was also a risk factor for COPD (OR = 1.98, 95% CI 1.42–2.77) and acute exacerbation of COPD admission (OR = 1.99, 95%CI 1.43–2.77). The increase of salt, sugar and alcohol consumption will not increase the risk of COPD and the risk of hospitalisation due to COPD. <b>Conclusion:</b> Therefore, we should strengthen the guidance of diet and living habits of obese patients. For patients with heavier weight and higher body fat rate, they should be instructed to lose weight and fat to prevent the occurrence of COPD. For obese patients with COPD, more attention should be paid to prevent the occurrence of acute exacerbation of COPD in advance.
DOI: 10.6084/m9.figshare.20110592
title: Additional file 1 of Treatment of distal radius fractures using a cemented K-wire frame

description: Additional file 1. Patients’ preoperative and postoperative data.
DOI: 10.6084/m9.figshare.16964708.v2
title: Monocyte-related gene biomarkers for latent and active tuberculosis

description: Monocytes are closely associated with tuberculosis (TB). Latent tuberculosis in some patients gradually develops into its active state. This study aimed to investigate the role of hub monocyte-associated genes in distinguishing latent TB infection (LTBI) from active TB. The gene expression profiles of 15 peripheral blood mononuclear cells (PBMCs) samples were downloaded from the gene expression omnibus (GEO) database, GSE54992. The monocyte abundance was high in active TB as evaluated by the Cell-type Identification by Estimating Relative Subsets of RNA Transcripts (CIBERSORT) algorithm. The limma test and correlation analysis documented 165 differentially expressed monocyte-related genes (DEMonRGs) between latent TB and active TB. Functional annotation and enrichment analyses of the DEMonRGs using the database for annotation, visualization, and integration discovery (DAVID) tools showed enrichment of inflammatory response mechanisms and immune-related pathways. A protein-protein interaction network was constructed with a node degree ≥10. The expression levels of these hub DEMonRGs (<i>SERPINA1, FUCA2</i>, and <i>HP</i>) were evaluated and verified using several independent datasets and clinical settings. Finally, a single sample scoring method was used to establish a gene signature for the three DEMonRGs, distinguishing active TB from latent TB. The findings of the present study provide a better understanding of monocyte-related molecular fundamentals in TB progression and contribute to the identification of new potential biomarkers for the diagnosis of active TB.
DOI: 10.6084/m9.figshare.20110566
title: Additional file 2 of Transcriptome study digs out BMP2 involved in adipogenesis in sheep tails

description: Additional file 2: Table S1. The top 8 most significantly affected differentially expressed genes in Hu sheep and Tibetan sheep. Table S2. Primers used in this study for RT-qPCR.
DOI: 10.6084/m9.figshare.20110592.v1
title: Additional file 1 of Treatment of distal radius fractures using a cemented K-wire frame

description: Additional file 1. Patients’ preoperative and postoperative data.
DOI: 10.6084/m9.figshare.13294834.v1
title: Additional file 1 of SNHG17 promotes the proliferation and migration of colorectal adenocarcinoma cells by modulating CXCL12-mediated angiogenesis

description: Additional file 1: Table S1. Sequences for PCR primers and transfection plasmids.
DOI: 10.6084/m9.figshare.25211777
title: FVC2002_DB1.zip

description: Preprocessed fingerprint data
DOI: 10.6084/m9.figshare.13302971
title: Metabolome and microbiome alterations in tongue coating of gastric precancerous lesion patients

description: <b>Objective</b>: This paper seeks to provide mechanistic insight into the pathological transition through the analysis of metabolites and microorganisms in the tongue coating of gastric precancerous lesions (GPL) patients. <b>Methods</b>: GC-TOF-MS and UHPLC-QE-MS metabolomics, combined with 16S rRNA microbiome techniques, were performed to explore the changes in metabolites and microorganisms in the tongue coating of GPL patients. <b>Results</b>: When compared with 15 controls, 133 metabolites were found to be differentially expressed in 60 GPL cases, of which could be divided into ten categories. Among them, most of the differentially expressed metabolites identified were lipids or lipid-like molecules. These metabolites were implicated in 6 metabolic pathways including glycine, serine and threonine metabolism, arginine and proline metabolism, sphingolipid metabolism, valine, leucine and isoleucine degradation, arachidonic acid metabolism, and tyrosine metabolism. The relative abundances of Alloprevotella, Solobacterium, Rothia, Eikenella, and Aggregatibacter in the GPL group increased significantly relative to the controls and were associated with lipids and lipid-like molecules, organic nitrogen compounds, organic oxygen compounds, phenylpropanoids and polyketides, and organoheterocyclic compounds, respectively. <b>Conclusions</b>: Compared with healthy people, the changes of tongue coating metabolites in GPL patients were mainly characterized by alterations in lipid metabolism and were associated with localized changes in the microbiome.
DOI: 10.6084/m9.figshare.19070174
title: Urinary proteomis of neonatal donkeys and adult donkeys

description: All urinary proteins identified in this study and the protein annotations were listed in the dataset.