cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5667436.v1
title: EFFECT OF THIDIAZURON CONCENTRATION AND APPLICATION PERIOD ON ‘ROYAL GALA’ APPLE FRUITING AND PRODUCTION

description: ABSTRACT ‘Gala’ apple trees have low fruit set in restrictive pollination situations, being an obstacle to the achievement of high production rates in orchards in southern Brazil, which can be minimized by the use of growth regulators. The aim of this study was to evaluate the effect of thidiazuron concentrations in ‘Royal Gala’ apple fruiting and production, grown in mild winter conditions. The experiment was conducted during the 2011/2012, 2012/2013 and 2013/2014 crop years in Fraiburgo, SC, on ‘Royal Gala’ apple trees in Marubakaido rootstock M9 with filter. In all evaluation cycles, the experimental design was a randomized block with factorial arrangement (6x2) with six TDZ concentrations and two application forms, with six replicates, and the experimental unit consisting of one plant. The TDZ concentrations of each treatment were applied split into two seasons. The first application was performed on pink bud stage (E2) and the second application was in full bloom stage (F2). The variables evaluated were: fruit set (%), return bloom (%), number and weight of fruits per plant, mean fruit weight (g) and average number of seeds per fruit. Data were submitted to analysis of variance, in which for significant variables by the F test, analysis of contrast and polynomial regression were performed in order to evaluate the response of variables with increasing TDZ concentration. TDZ is effective even at low concentrations, increasing the production and fruit set of ‘Gala’ apples in the climatic conditions of southern Brazil.
DOI: 10.6084/m9.figshare.5667433
title: Simple protocol for population (Sanger) sequencing for Zika virus genomic regions

description: BACKGROUND A number of Zika virus (ZIKV) sequences were obtained using Next-generation sequencing (NGS), a methodology widely applied in genetic diversity studies and virome discovery. However Sanger method is still a robust, affordable, rapid and specific tool to obtain valuable sequences. OBJECTIVE The aim of this study was to develop a simple and robust Sanger sequencing protocol targeting ZIKV relevant genetic regions, as envelope protein and nonstructural protein 5 (NS5). In addition, phylogenetic analysis of the ZIKV strains obtained using the present protocol and their comparison with previously published NGS sequences were also carried out. METHODS Six Vero cells isolates from serum and one urine sample were available to develop the procedure. Primer sets were designed in order to conduct a nested RT-PCR and a Sanger sequencing protocols. Bayesian analysis was used to infer phylogenetic relationships. FINDINGS Seven complete ZIKV envelope protein (1,571 kb) and six partial NS5 (0,798 Kb) were obtained using the protocol, with no amplification of NS5 gene from urine sample. Two NS5 sequences presented ambiguities at positions 495 and 196. Nucleotide analysis of a Sanger sequence and consensus sequence of previously NGS study revealed 100% identity. ZIKV strains described here clustered within the Asian lineage. MAIN CONCLUSIONS The present study provided a simple and low-cost Sanger protocol to sequence relevant genes of the ZIKV genome. The identity of Sanger generated sequences with published consensus NGS support the use of Sanger method for ZIKV population studies. The regions evaluated were able to provide robust phylogenetic signals and may be used to conduct molecular epidemiological studies and monitor viral evolution.
DOI: 10.6084/m9.figshare.5667433.v1
title: Simple protocol for population (Sanger) sequencing for Zika virus genomic regions

description: BACKGROUND A number of Zika virus (ZIKV) sequences were obtained using Next-generation sequencing (NGS), a methodology widely applied in genetic diversity studies and virome discovery. However Sanger method is still a robust, affordable, rapid and specific tool to obtain valuable sequences. OBJECTIVE The aim of this study was to develop a simple and robust Sanger sequencing protocol targeting ZIKV relevant genetic regions, as envelope protein and nonstructural protein 5 (NS5). In addition, phylogenetic analysis of the ZIKV strains obtained using the present protocol and their comparison with previously published NGS sequences were also carried out. METHODS Six Vero cells isolates from serum and one urine sample were available to develop the procedure. Primer sets were designed in order to conduct a nested RT-PCR and a Sanger sequencing protocols. Bayesian analysis was used to infer phylogenetic relationships. FINDINGS Seven complete ZIKV envelope protein (1,571 kb) and six partial NS5 (0,798 Kb) were obtained using the protocol, with no amplification of NS5 gene from urine sample. Two NS5 sequences presented ambiguities at positions 495 and 196. Nucleotide analysis of a Sanger sequence and consensus sequence of previously NGS study revealed 100% identity. ZIKV strains described here clustered within the Asian lineage. MAIN CONCLUSIONS The present study provided a simple and low-cost Sanger protocol to sequence relevant genes of the ZIKV genome. The identity of Sanger generated sequences with published consensus NGS support the use of Sanger method for ZIKV population studies. The regions evaluated were able to provide robust phylogenetic signals and may be used to conduct molecular epidemiological studies and monitor viral evolution.
DOI: 10.6084/m9.figshare.5667430
title: Reading the past with tools of the future: a digital analysis of critical texts from the early nineteenth century

description: Abstract This article examines a set of critical texts produced in the United Kingdom, France and Portugal between 1797 and 1821 in order to understand how men of letters reacted to novels in the early nineteenth century and what criteria they used in their analyses. It inquires whether the language in which the texts were written and its purpose interfered in thinking about fiction. The study uses a digital annotation tool, DLNotes2, which allows comparisons between large amounts of data with an accuracy that a regular reading would not allow. The analysis revealed the existence of a transnational literate community, which thought about the novels in a very similar way.
DOI: 10.6084/m9.figshare.5667430.v1
title: Reading the past with tools of the future: a digital analysis of critical texts from the early nineteenth century

description: Abstract This article examines a set of critical texts produced in the United Kingdom, France and Portugal between 1797 and 1821 in order to understand how men of letters reacted to novels in the early nineteenth century and what criteria they used in their analyses. It inquires whether the language in which the texts were written and its purpose interfered in thinking about fiction. The study uses a digital annotation tool, DLNotes2, which allows comparisons between large amounts of data with an accuracy that a regular reading would not allow. The analysis revealed the existence of a transnational literate community, which thought about the novels in a very similar way.
DOI: 10.6084/m9.figshare.5667427
title: High burden and frailty: association with poor cognitive performance in older caregivers living in rural areas

description: Abstract Introduction: Older caregivers living in rural areas may be exposed to three vulnerable conditions, i.e., those related to care, their own aging, and their residence context. Objective: To analyze the association of burden and frailty with cognition performance in older caregivers in rural communities. Method: In this cross-sectional survey, 85 older caregivers who cared for dependent elders were included in this study. Global cognition (Addenbrooke's Cognitive Examination – Revised; Mini Mental State Examination), burden (Zarit Burden Interview) and frailty (Fried's frailty phenotype) were assessed. All ethical principles were observed. Results: Older caregivers were mostly women (76.7%); mean age was 69 years. Cognitive impairment was present in 15.3%, severe burden in 8.2%, frailty in 9.4%, and pre-frailty in 52.9% of the older caregivers. More severely burdened or frail caregivers had worse cognitive performance than those who were not, respectively (ANOVA test). Caregivers presenting a high burden level and some frailty degree (pre-frail or frail) simultaneously were more likely to have a reduced global cognition performance. Conclusion: A significant number of older caregivers had low cognitive performance. Actions and resources to decrease burden and physical frailty may provide better cognition and well-being, leading to an improved quality of life and quality of the care provided by the caregivers.
DOI: 10.6084/m9.figshare.5667427.v1
title: High burden and frailty: association with poor cognitive performance in older caregivers living in rural areas

description: Abstract Introduction: Older caregivers living in rural areas may be exposed to three vulnerable conditions, i.e., those related to care, their own aging, and their residence context. Objective: To analyze the association of burden and frailty with cognition performance in older caregivers in rural communities. Method: In this cross-sectional survey, 85 older caregivers who cared for dependent elders were included in this study. Global cognition (Addenbrooke's Cognitive Examination – Revised; Mini Mental State Examination), burden (Zarit Burden Interview) and frailty (Fried's frailty phenotype) were assessed. All ethical principles were observed. Results: Older caregivers were mostly women (76.7%); mean age was 69 years. Cognitive impairment was present in 15.3%, severe burden in 8.2%, frailty in 9.4%, and pre-frailty in 52.9% of the older caregivers. More severely burdened or frail caregivers had worse cognitive performance than those who were not, respectively (ANOVA test). Caregivers presenting a high burden level and some frailty degree (pre-frail or frail) simultaneously were more likely to have a reduced global cognition performance. Conclusion: A significant number of older caregivers had low cognitive performance. Actions and resources to decrease burden and physical frailty may provide better cognition and well-being, leading to an improved quality of life and quality of the care provided by the caregivers.
DOI: 10.6084/m9.figshare.5667421
title: Adaptation and validation of the Melbourne Decision Making Questionnaire to Brazilian Portuguese

description: Abstract Introduction: Decision making (DM) is among the most important abilities for everyday functioning. However, the most widely used measures of DM come from behavioral paradigms, whose ecological validity and standalone use has been criticized in the literature. Though these issues could be addressed by the use of DM questionnaires as a complementary assessment method, no such instruments have been validated for use in Brazilian Portuguese. Therefore, the aim of this study was to conduct the translation and validation of the Melbourne Decision Making Questionnaire (MDMQ) for use in a Brazilian population. Methods: The adaptation of the MDMQ involved the following steps: translation, back-translation, expert review and pilot study. These steps were followed by factor analysis and internal consistency measurements, which led to the exclusion of 4 items from the scale. The 18-item version of the MDMQ was then administered to a validation sample consisting of healthy adults, as well as patients with bipolar disorder (BD) and major depressive disorder (MDD). Results: The instrument displayed good internal consistency, with the hypervigilance subscale showing the lowest, though still acceptable, Cronbach's alpha value. Its factor structure was comparable to that of the original MDMQ according to confirmatory factor analysis. Nevertheless, the MDMQ was sensitive to both depression severity and the presence of MDD and BD, both of which are known to have an impact on DM ability. Conclusion: The version of the MDMQ produced in the present study may be an important addition to neuropsychological assessment batteries with a focus on DM and related abilities
DOI: 10.6084/m9.figshare.5667421.v1
title: Adaptation and validation of the Melbourne Decision Making Questionnaire to Brazilian Portuguese

description: Abstract Introduction: Decision making (DM) is among the most important abilities for everyday functioning. However, the most widely used measures of DM come from behavioral paradigms, whose ecological validity and standalone use has been criticized in the literature. Though these issues could be addressed by the use of DM questionnaires as a complementary assessment method, no such instruments have been validated for use in Brazilian Portuguese. Therefore, the aim of this study was to conduct the translation and validation of the Melbourne Decision Making Questionnaire (MDMQ) for use in a Brazilian population. Methods: The adaptation of the MDMQ involved the following steps: translation, back-translation, expert review and pilot study. These steps were followed by factor analysis and internal consistency measurements, which led to the exclusion of 4 items from the scale. The 18-item version of the MDMQ was then administered to a validation sample consisting of healthy adults, as well as patients with bipolar disorder (BD) and major depressive disorder (MDD). Results: The instrument displayed good internal consistency, with the hypervigilance subscale showing the lowest, though still acceptable, Cronbach's alpha value. Its factor structure was comparable to that of the original MDMQ according to confirmatory factor analysis. Nevertheless, the MDMQ was sensitive to both depression severity and the presence of MDD and BD, both of which are known to have an impact on DM ability. Conclusion: The version of the MDMQ produced in the present study may be an important addition to neuropsychological assessment batteries with a focus on DM and related abilities
DOI: 10.6084/m9.figshare.5667418
title: Successional stage effect on the availability of tree cavities for cavity-nesting birds in an Atlantic Forest park from the state of São Paulo, Brazil

description: Abstract The availability of suitable cavities and substrate for hole construction can limit the populations of birds that rely on tree hollows to reproduce. Several studies have focused on the effects of types of habitats, and types of human disturbances on cavities abundance, but the effect of successional stages in the Atlantic Forest has been poorly addressed. In this study we aimed to compare the availability and biometric characteristics of tree cavities between primary and mid-successional stage sites in an Atlantic Forest area from southeastern Brazil. Based on nest characteristics described in the literature, we inferred if hollows present in secondary sites could harbor the large secondary-nester Atlantic Forest birds, with special attention to toucans and hawks. From September 2016 to April 2017, 96 cavities were sampled, 67 in the primary, and 29 in the secondary plots. Our data revealed that the communities of cavity-nester birds in mid-successional stage areas may be more affected by the reduced cavity availability than by cavities quality, as the number of cavities in these sites was less than half than that found in mature forests. We also provide evidences that the largest cavity nesters, such as the biggest hawks, might have limited nesting possibilities in mid-successional stage areas especially due to small cavity entrances, which may have important reflects in conservation strategies.
DOI: 10.6084/m9.figshare.5667418.v1
title: Successional stage effect on the availability of tree cavities for cavity-nesting birds in an Atlantic Forest park from the state of São Paulo, Brazil

description: Abstract The availability of suitable cavities and substrate for hole construction can limit the populations of birds that rely on tree hollows to reproduce. Several studies have focused on the effects of types of habitats, and types of human disturbances on cavities abundance, but the effect of successional stages in the Atlantic Forest has been poorly addressed. In this study we aimed to compare the availability and biometric characteristics of tree cavities between primary and mid-successional stage sites in an Atlantic Forest area from southeastern Brazil. Based on nest characteristics described in the literature, we inferred if hollows present in secondary sites could harbor the large secondary-nester Atlantic Forest birds, with special attention to toucans and hawks. From September 2016 to April 2017, 96 cavities were sampled, 67 in the primary, and 29 in the secondary plots. Our data revealed that the communities of cavity-nester birds in mid-successional stage areas may be more affected by the reduced cavity availability than by cavities quality, as the number of cavities in these sites was less than half than that found in mature forests. We also provide evidences that the largest cavity nesters, such as the biggest hawks, might have limited nesting possibilities in mid-successional stage areas especially due to small cavity entrances, which may have important reflects in conservation strategies.
DOI: 10.6084/m9.figshare.5667415
title: Resection of Left Atrial Myxoma in a Patient with Retrosternal Gastric Tube: a Case Report

description: Abstract The median sternotomy remains the standard approach in cardiovascular surgery but, in some conditions, it can be considered difficult to perform, especially in patients with history of esophagectomy. This case report describes a successful resection of a left atrial myxoma through a right anterolateral thoracotomy approach in a patient with a previous retrosternal gastric tube reconstruction. The decision for the best surgical approach was made after a heart surgery team discussion. Through this surgical access, a safe and excellent exposure of the left atrium was possible, and a complete resection of the myxoma was performed without any injury to the gastric tube.
DOI: 10.6084/m9.figshare.5667415.v1
title: Resection of Left Atrial Myxoma in a Patient with Retrosternal Gastric Tube: a Case Report

description: Abstract The median sternotomy remains the standard approach in cardiovascular surgery but, in some conditions, it can be considered difficult to perform, especially in patients with history of esophagectomy. This case report describes a successful resection of a left atrial myxoma through a right anterolateral thoracotomy approach in a patient with a previous retrosternal gastric tube reconstruction. The decision for the best surgical approach was made after a heart surgery team discussion. Through this surgical access, a safe and excellent exposure of the left atrium was possible, and a complete resection of the myxoma was performed without any injury to the gastric tube.
DOI: 10.6084/m9.figshare.5667412
title: Cymbopogon citratus essential oil: effect on polymicrobial caries-related biofilm with low cytotoxicity

description: Abstract The objective of this study was to evaluate the effects of Cymbopogon citratus essential oil and its main compound (citral) against primary dental colonizers and caries-related species. Chemical characterization of the essential oil was performed by gas chromatography/mass spectroscopy (GC/MS), and the main compound was determined. Antimicrobial activity was tested against Actinomyces naeslundii, Lactobacillus acidophilus, S. gordonii, S. mitis, S. mutans, S. sanguinis and S. sobrinus. Minimum inhibitory and bactericide concentrations were determined by broth microdilution assay for streptococci and lactobacilli reference, and for clinical strains. The effect of the essential oil on bacterial adhesion and biofilm formation/disruption was investigated. Negative (without treatment) and positive controls (chlorhexidine) were used. The effect of citral on preformed biofilm was also tested using the same methodology. Monospecies and microcosm biofilms were tested. ANOVA or Kruskal-Wallis tests were used (α=0.05). Cytotoxicity of the essential oil to human keratinocytes was performed by MTT assay. GC/MS demonstrated one major component (citral). The essential oil showed an inhibitory effect on all tested bacterial species, including S. mutans and L. acidophilus. Essential oil of C. citratus (10X MIC) reduced the number of viable cells of lactobacilli and streptococci biofilms (p &lt; 0.05). The essential oil inhibited adhesion of caries-related polymicrobial biofilm to dental enamel (p &lt; 0.01). Citral significantly reduced the number of viable cells of streptococci biofilm (p &lt; 0.001). The essential oil showed low cytotoxicity to human keratinocytes. Based on these findings, this study can contribute to the development of new formulations for products like mouthwash, against dental biofilms.
DOI: 10.6084/m9.figshare.5667412.v1
title: Cymbopogon citratus essential oil: effect on polymicrobial caries-related biofilm with low cytotoxicity

description: Abstract The objective of this study was to evaluate the effects of Cymbopogon citratus essential oil and its main compound (citral) against primary dental colonizers and caries-related species. Chemical characterization of the essential oil was performed by gas chromatography/mass spectroscopy (GC/MS), and the main compound was determined. Antimicrobial activity was tested against Actinomyces naeslundii, Lactobacillus acidophilus, S. gordonii, S. mitis, S. mutans, S. sanguinis and S. sobrinus. Minimum inhibitory and bactericide concentrations were determined by broth microdilution assay for streptococci and lactobacilli reference, and for clinical strains. The effect of the essential oil on bacterial adhesion and biofilm formation/disruption was investigated. Negative (without treatment) and positive controls (chlorhexidine) were used. The effect of citral on preformed biofilm was also tested using the same methodology. Monospecies and microcosm biofilms were tested. ANOVA or Kruskal-Wallis tests were used (α=0.05). Cytotoxicity of the essential oil to human keratinocytes was performed by MTT assay. GC/MS demonstrated one major component (citral). The essential oil showed an inhibitory effect on all tested bacterial species, including S. mutans and L. acidophilus. Essential oil of C. citratus (10X MIC) reduced the number of viable cells of lactobacilli and streptococci biofilms (p &lt; 0.05). The essential oil inhibited adhesion of caries-related polymicrobial biofilm to dental enamel (p &lt; 0.01). Citral significantly reduced the number of viable cells of streptococci biofilm (p &lt; 0.001). The essential oil showed low cytotoxicity to human keratinocytes. Based on these findings, this study can contribute to the development of new formulations for products like mouthwash, against dental biofilms.