cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8154038.v1
title: Kolosov.et.al.2019.J.Exp.Biol.Data.Septate.Junction.Manuscript.zip

description: This .zip file contains data and images accompanying Kolosov et al. (2019) Septate junction in the distal ileac plexus of larval lepidopteran Trichoplusia ni: alterations in paracellular permeability during ion transport reversal<b> </b>Published in Journal of Experimental Biology.<br>For detailed descriptions of methods and analyses performed please see the main manuscript.<br><b>This archive contains:</b>1) An excel file containing qPCR and permeability data organized into tabs.2) Two sets of TEM images.3) A set of immunoblot images.<br>
DOI: 10.6084/m9.figshare.8153969
title: Two new species of <i>Tuber</i> previously reported as <i>Tuber malacodermum</i>

description: Recent collections of <i>Tuber malacodermum</i> from Spain, Corsica, and Mexico were compared in an integrative morphological and molecular phylogenetic framework, including study of type material. Phylogenetic analyses of nuc rDNA internal transcribed spacer (ITS1-5.8S-ITS2 = ITS) and nuc 28S rDNA (28S) regions showed that specimens from Spain and Corsica form a monophyletic group closely related to <i>T. melosporum</i> and <i>T. rufum</i>, whereas Mexican specimens form a clade within the <i>T. lyonii</i> species complex. Peridium and ascospore morphology contribute clear morphological distinctions among specimens from Spain and Corsica, Mexico, and the type specimen of <i>T. malacodermum</i>. Based on results of the morphological and molecular phylogenetic analyses, we assigned the specimens from Spain and Corsica to <i>Tuber pustulatum</i>, sp. nov., and the Mexican specimens to <i>Tuber theleascum</i>, sp. nov. We restrict <i>T. malacodermum</i> to the sole type material. Formal descriptions and illustrations of these taxa are provided.
DOI: 10.6084/m9.figshare.8153969.v1
title: Two new species of <i>Tuber</i> previously reported as <i>Tuber malacodermum</i>

description: Recent collections of <i>Tuber malacodermum</i> from Spain, Corsica, and Mexico were compared in an integrative morphological and molecular phylogenetic framework, including study of type material. Phylogenetic analyses of nuc rDNA internal transcribed spacer (ITS1-5.8S-ITS2 = ITS) and nuc 28S rDNA (28S) regions showed that specimens from Spain and Corsica form a monophyletic group closely related to <i>T. melosporum</i> and <i>T. rufum</i>, whereas Mexican specimens form a clade within the <i>T. lyonii</i> species complex. Peridium and ascospore morphology contribute clear morphological distinctions among specimens from Spain and Corsica, Mexico, and the type specimen of <i>T. malacodermum</i>. Based on results of the morphological and molecular phylogenetic analyses, we assigned the specimens from Spain and Corsica to <i>Tuber pustulatum</i>, sp. nov., and the Mexican specimens to <i>Tuber theleascum</i>, sp. nov. We restrict <i>T. malacodermum</i> to the sole type material. Formal descriptions and illustrations of these taxa are provided.
DOI: 10.6084/m9.figshare.8153852
title: Somatic VCF file of 185 matched CMT-normal pairs

description: This VCF file is merged variant calls of whole exome sequencing of 185 matched CMT and normal samples called by Mutect2<br>
DOI: 10.6084/m9.figshare.8153834
title: Germline VCF files of 197 CMTs and 185 normal samples

description: The compressed file is germline mutations (SNPs and indels) of 197 CMTs and 185 normal samples called by GATK haplotype caller.<br>
DOI: 10.6084/m9.figshare.8153834.v1
title: Germline VCF files of 197 CMTs and 185 normal samples

description: The compressed file is germline mutations (SNPs and indels) of 197 CMTs and 185 normal samples called by GATK haplotype caller.<br>
DOI: 10.6084/m9.figshare.8153828
title: Dataset for: Targeting the site encoded by SERPINA1*E342K for treating alpha-1 antitrypsin deficiency associated liver diseases

description: Alpha1-antitrypsin (AAT) deficiency predisposes individuals to emphysema and liver diseases such as cirrhosis and hepatocellular carcinoma. The deficiency results from mutations in the SERPIN1A gene encoding AAT molecules that cause hepatotoxic retention within the endoplasmic reticulum. Since the E342K mutation is the basis for destabilization leading to lung and liver pathology, we used the crystal structure of the mutated AAT as the basis for molecular docking selection of candidate compounds that may bind and stabilize the 342K structural pocket. We identified compounds that inhibited intracellular accumulation of AAT in hepatocytes in vitro. These data suggest that drug binding to a structural site encoded by a mutation associated with AAT deficiency has the potential for clinical utility by modulating conformational transitions.
DOI: 10.6084/m9.figshare.8153828.v1
title: Dataset for: Targeting the site encoded by SERPINA1*E342K for treating alpha-1 antitrypsin deficiency associated liver diseases

description: Alpha1-antitrypsin (AAT) deficiency predisposes individuals to emphysema and liver diseases such as cirrhosis and hepatocellular carcinoma. The deficiency results from mutations in the SERPIN1A gene encoding AAT molecules that cause hepatotoxic retention within the endoplasmic reticulum. Since the E342K mutation is the basis for destabilization leading to lung and liver pathology, we used the crystal structure of the mutated AAT as the basis for molecular docking selection of candidate compounds that may bind and stabilize the 342K structural pocket. We identified compounds that inhibited intracellular accumulation of AAT in hepatocytes in vitro. These data suggest that drug binding to a structural site encoded by a mutation associated with AAT deficiency has the potential for clinical utility by modulating conformational transitions.
DOI: 10.6084/m9.figshare.8153819
title: DATASET for the manuscript titled "Does variability of footfall kinematics correlate with dynamic stability of the centre of mass during walking?"

description: Gait variability is a sensitive metric for assessing functional deficits in individuals with mobility impairments. To correctly represent the temporal evolution of gait kinematics, nonlinear measures require extended and uninterrupted time series.<br>The full-body gait patterns of twenty healthy subjects were captured during five walking trials (at least 5 minutes) on a treadmill under different weight perturbation conditions with both weight reductions (of 40 and 20% using a harness labelled har40 and har20) as well as weight additions (of 40% and 20% using weight vests labelled wei40 and wei20) and these were compared against normal weight condition (normg).<br><br>Data is presented at .mat files for all subjects and conditions.<br><br>
DOI: 10.6084/m9.figshare.8153819.v1
title: Does variability of footfall kinematics correlate with dynamic stability of the centre of mass during walking?

description: Gait variability is a sensitive metric for assessing functional deficits in individuals with mobility impairments. To correctly represent the temporal evolution of gait kinematics, nonlinear measures require extended and uninterrupted time series.<br>The full-body gait patterns of twenty healthy subjects were captured during five walking trials (at least 5 minutes) on a treadmill under different weight perturbation conditions with both weight reductions (of 40 and 20% using a harness labelled har40 and har20) as well as weight additions (of 40% and 20% using weight vests labelled wei40 and wei20) and these were compared against normal weight condition (normg).<br><br>Data is presented at .mat files for all subjects and conditions.<br><br>
DOI: 10.6084/m9.figshare.8153819.v2
title: DATASET for the manuscript titled "Does variability of footfall kinematics correlate with dynamic stability of the centre of mass during walking?"

description: Gait variability is a sensitive metric for assessing functional deficits in individuals with mobility impairments. To correctly represent the temporal evolution of gait kinematics, nonlinear measures require extended and uninterrupted time series.<br>The full-body gait patterns of twenty healthy subjects were captured during five walking trials (at least 5 minutes) on a treadmill under different weight perturbation conditions with both weight reductions (of 40 and 20% using a harness labelled har40 and har20) as well as weight additions (of 40% and 20% using weight vests labelled wei40 and wei20) and these were compared against normal weight condition (normg).<br><br>Data is presented at .mat files for all subjects and conditions.<br><br>
DOI: 10.6084/m9.figshare.8153810
title: Citibike Data - June 2018

description: Where do Citi Bikers ride? When do they ride? How far do they go? Which stations are most popular? What days of the week are most rides taken on? We've heard all of these questions and more from you, and we're happy to provide the data to help you discover the answers to these questions and more. We invite developers, engineers, statisticians, artists, academics and other interested members of the public to use the data we provide for analysis, development, visualization and whatever else moves you. - Trip Duration (seconds) - Start Time and Date - Stop Time and Date - Start Station Name - End Station Name - Station ID - Station Lat/Long - Bike ID - User Type (Customer = 24-hour pass or 3-day pass user; Subscriber = Annual Member) - Gender (Zero=unknown; 1=male; 2=female) - Year of Birth Source https://www.citibikenyc.com/system-data
DOI: 10.6084/m9.figshare.8153762
title: pcare.csv

description: Dataset used for the statistical analyses of the paper on environmental effects on parental care visitation patterns in blue tits Cyanistes caeruleus.<br>
DOI: 10.6084/m9.figshare.8153762.v1
title: pcare.csv

description: Dataset used for the statistical analyses of the paper on environmental effects on parental care visitation patterns in blue tits Cyanistes caeruleus.<br>
DOI: 10.6084/m9.figshare.8153630
title: Towards a more flexible language of thought: Bayesian grammar updates after each concept exposure

description: In the text files, columns correspond to the 6 concepts, rows are times spent in that concept by each participant (in miliseconds).<br>The file time_target.txt correponds to the 23 participants from the target group.<br>The file time_control.txt corresponds to the 21 participants from the control group.
DOI: 10.6084/m9.figshare.8153630.v2
title: Towards a more flexible language of thought: Bayesian grammar updates after each concept exposure

description: In the text files, columns correspond to the 6 concepts, rows are times spent in that concept by each participant (in miliseconds).<br>The file time_target.txt correponds to the 23 participants from the target group.<br>The file time_control.txt corresponds to the 21 participants from the control group.
DOI: 10.6084/m9.figshare.8153630.v1
title: Learning is Compiling AMT data

description: In the text files, columns correspond to the 6 concepts, rows are times spent in that concept by each participant (in miliseconds).<br>The file time_target.txt correponds to the 23 participants from the target group.<br>The file time_control.txt corresponds to the 21 participants from the control group.
DOI: 10.6084/m9.figshare.8153627
title: Clinical information with sample submission numbers

description: Clinical information with SRA and GEO submission numbers
DOI: 10.6084/m9.figshare.8153627.v1
title: Clinical information with sample submission numbers

description: Clinical information with sample submission numbers
DOI: 10.6084/m9.figshare.12871310
title: Supplementary Material for: One-Year Course of Periprocedural Anticoagulation in Atrial Fibrillation Ablation: Results of a German Nationwide Survey

description: <b><i>Introduction:</i></b> Periprocedural oral anticoagulation (OAC) strategies for atrial fibrillation (AF) ablation procedures are changing rapidly. <b><i>Objective:</i></b> To assess the management and course of periprocedural OAC for AF ablation procedures in experienced electrophysiology (EP) centers in Germany over the last 12 months. <b><i>Methods:</i></b> The data are based on an electronic questionnaire, which was sent to 35 experienced EP centers in September 2018 and then exactly 1 year later. Participants provided information on their periprocedural OAC management, the handling with dual therapy (OAC plus single antiplatelet therapy), the availability of specific antidotes, the transseptal puncture approach, and noteworthy complications. <b><i>Results:</i></b> Responses were received from all 35 centers and represent 10,010 AF ablation procedures annually. In 2018, the administration of vitamin K antagonist (VKA) was continued throughout the procedure at all centers (100%). In contrast, the majority of centers used minimally interrupted periprocedural non-vitamin K antagonist oral anticoagulants (NOAC) (54.3%), 13 centers (37.2%) completely interrupted NOAC, and only 3 centers (8.5%) continued NOAC throughout the procedure. At the 1-year follow-up survey, 32 centers were found to have continued their previous strategy of periprocedural OAC and 3 changed from a minimally interrupted to a continued NOAC strategy. Of note, 30 centers (85.7%) performed transseptal puncture fluoroscopically without additional cardiac imaging. In the setting of uninterrupted periprocedural OAC management, no relevant complications were noted. <b><i>Conclusion:</i></b> Our survey shows marked heterogeneous periprocedural OAC management at experienced EP centers in Germany. Whereas continuation of VKA has already been integrated into clinical practice, the majority of centers still use a minimally interrupted NOAC strategy.
DOI: 10.6084/m9.figshare.8153474
title: Samples, methods and clinical information

description: Samples, methods and clinical information for 197 canine mammary gland tumors
DOI: 10.6084/m9.figshare.8153474.v1
title: Sample methods and clinical information

description: Sample methods and clinical information for 197 canine mammary gland tumors
DOI: 10.6084/m9.figshare.8153441
title: Dataset S2 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153441.v1
title: Dataset S2 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153438
title: Dataset S10 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153438.v1
title: Dataset S10 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153435
title: Dataset S1 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153435.v1
title: Dataset S1 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153432
title: Dataset S3 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Supplementary Methods, Figures and Tables;Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153432.v1
title: Dataset S3 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Supplementary Methods, Figures and Tables;Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153429
title: Dataset S8 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153429.v1
title: Dataset S8 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153426
title: Dataset S7 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153426.v1
title: Dataset S7 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153423
title: Dataset S4 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153423.v1
title: Dataset S4 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153420
title: Dataset S6 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153420.v1
title: Dataset S6 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153417
title: Dataset S5 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153417.v1
title: Dataset S5 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153414
title: Dataset S9 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153414.v1
title: Dataset S9 from Conserving evolutionary history does not result in greater diversity over geological timescales

description: Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).
DOI: 10.6084/m9.figshare.8153342
title: A comparison of the effect of supplementation and sunlight exposure on serum vitamin D and parathyroid hormone: A systematic review and meta-analysis

description: <b>Background:</b> Supplementation and getting sunlight exposure are two treatments for vitamin D deficiency. However, studies reported conteroversial findings regarding the efficacy of these two methods. <b>Objective:</b> To compare the effect of oral vitamin D supplementation with sunlight exposure on serum vitamin D and parathyroid hormone (PTH). <b>Methods:</b> A computer-based literature search through PubMed, Scopus and Google scholar search engines was conducted until April 2019 to find clinical trials which compared the effect of oral vitamin D supplementation with sunlight exposure on serum vitamin D and PTH. Means for serum 25-hydroxy vitamin D3 (25(OH) D3) and PTH concentration were extracted. A subgroup analysis was used to detect potential sources of inter-study heterogeneity. Mean differences (MD) were analyzed using a random-effects model (the DerSimonian-Laird approach). <b>Results:</b> A total of seven papers were included in the meta-analysis. Pooled analysis showed that vitamin D supplementation significantly elevated levels of serum 25(OH) D3 in comparison with sunlight exposure (MD: 8.56nmol/l, 95%CI: 4.15, 12.97, T<sup>2</sup> = 40.32%, H<sup>2</sup> = 9.45%, P for heterogeneity p <b>Conclusion:</b> Vitamin D supplementation was more effective than sun exposure at increasing serum 25(OH) D3. The difference between efficacy of vitamin D supplementation and sun exposure was lower in studies which used long-term sun exposure or applied UVB treatment instead of direct sunlight.
DOI: 10.6084/m9.figshare.8153342.v1
title: A comparison of the effect of supplementation and sunlight exposure on serum vitamin D and parathyroid hormone: A systematic review and meta-analysis

description: <b>Background:</b> Supplementation and getting sunlight exposure are two treatments for vitamin D deficiency. However, studies reported conteroversial findings regarding the efficacy of these two methods. <b>Objective:</b> To compare the effect of oral vitamin D supplementation with sunlight exposure on serum vitamin D and parathyroid hormone (PTH). <b>Methods:</b> A computer-based literature search through PubMed, Scopus and Google scholar search engines was conducted until April 2019 to find clinical trials which compared the effect of oral vitamin D supplementation with sunlight exposure on serum vitamin D and PTH. Means for serum 25-hydroxy vitamin D3 (25(OH) D3) and PTH concentration were extracted. A subgroup analysis was used to detect potential sources of inter-study heterogeneity. Mean differences (MD) were analyzed using a random-effects model (the DerSimonian-Laird approach). <b>Results:</b> A total of seven papers were included in the meta-analysis. Pooled analysis showed that vitamin D supplementation significantly elevated levels of serum 25(OH) D3 in comparison with sunlight exposure (MD: 8.56nmol/l, 95%CI: 4.15, 12.97, T<sup>2</sup> = 40.32%, H<sup>2</sup> = 9.45%, P for heterogeneity p <b>Conclusion:</b> Vitamin D supplementation was more effective than sun exposure at increasing serum 25(OH) D3. The difference between efficacy of vitamin D supplementation and sun exposure was lower in studies which used long-term sun exposure or applied UVB treatment instead of direct sunlight.
DOI: 10.6084/m9.figshare.8153312
title: DEM_P16_007228_P15_007017

description: This is a CTX DEM made from images P15_007017_1969_XI_16N329W and P16_007228_1973_XI_17N329W<br>