cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48610/7f1ad77
title: Paediatric sepsis whole blood transcriptomics

description: This dataset was generated using Illumina sequencing of RNA extracted from whole blood of patients presenting with sepsis to ICU and ED. The dataset was generated in order to find biomarkers which can distinguish different disease classes (i.e. reasons for febrile illness) including bacterial infection, viral infection and non-infectious sepsis, as well as to find biomarkers which can distinguish severe from less severe disease, as measured by total number of organ dysfunctions. The data sets consists of a discovery and validation cohort.
DOI: 10.48610/7f3ae88
title: Data: confocal reflectance imaging as a highly sensitive imaging modality for 3D cell culture

description: Data used to demonstrate confocal reflectance imaging as a highly sensitive imaging modality for 3D cell culture. Data includes reflectance and fluorescence imaging of cultured osteocyte and fibroblast cells in 3D polyisocyanopeptide (PIC) hydrogel, as well as collagen, fibrin, and Matrigel. Confocal reflectance imaging typically suffers high background and poor sensitivity. We demonstrate sensitive and low-background reflectance imaging of cells encapsulated in transparent 3D hydrogels. Nanoscale cell morphology is visualized with sensitivity similar to confocal fluorescence, with low laser power, minimal specimen preparation, and reduced toxicity.
DOI: 10.48610/805a8a0
title: Transient 3D simulations of three optimized sedimentation models using open source CFD drift-flux solver in OpenFOAM (low, high and normal flowrate)

description: Full time results using volume render of solids volume fraction and velocity magnitude with underload initial conditions with 5.9 [L/min], 58.8 [L/min], and 29.4 [L/min] inlet flow rates.
DOI: 10.5281/zenodo.18320825
title: Photovoltaic Semantic Segmentation Dataset

description: Photovoltaic Semantic Segmentation Dataset
DOI: 10.48610/8103437
title: Phenology and reproductive biology of Avena ludoviciana in relation to combined heat and drought stress

description: The phenology and reproductive biology of four Avena ludoviciana biotypes were studied under 1) an ambient temperature treatment (23/12°C day/night) with 100% PAWC (control); 2) an elevated temperature treatment (29/23°C day/night) with 100% PAWC (heat stress); 3) an ambient temperature treatment (23/12°C day/night) with 60% PAWC water stress); and 4) an elevated temperature treatment with a 60% PAWC (combined heat and water stress). Seeds of the biotypes, Biloela 1 (−24.3547, 150.4977) and Biloela 2 (−24.3504, 150.4977) were collected from the northern zone, and Toobeah (−28.3679, 149.5219) and Jandowae (−26.6672, 151.0246) were collected from the southern zone of the Northern Grains Region of Australia. The study was conducted for two years at The University of Queensland Gatton campus.
DOI: 10.15468/dl.m28hb5
title: Occurrence Download

description: A dataset containing 11919 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((6.50125 75.98676,34.80614 75.98676,34.80614 81.00686,6.50125 81.00686,6.50125 75.98676))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta",
 "Year 2017-2026"
 ]
}

 The dataset includes 11919 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001336-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48610/81462a6
title: Cholinergic basal forebrain degeneration due to sleep-disordered breathing project source data

description: These data are the files used and underpinning the publication Qian et al, 2022 Nat Comm.
It includes : Source data for each figure for the graphs, Prism files of statistical analyses, spreadsheets of raw and processed data for cell counts, and biochemical, breathing, and sleep measures.
DOI: 10.48610/8246441
title: Great Barrier Reef non-cyclonic and on-reef wave model predictions

description: Data is contained in NetCDF format (see https://www.unidata.ucar.edu/software/netcdf/) and readable by a range of software (QGIS, python, gfortran). The Great Barrier Reef is broken into four regions (Far Northern Queensland, Cairns to Cooktown, Townsville to Whitsunday and Mackay and Capricorn), and includes a range of wave parameters including significant wave height, peak wave period, wave energy density, wave energy flux, still water and near bed characteristic velocity amplitude, each at mean, maximum and several percentiles (90, 95 & 99) in between. Much more information is contained in See  Roelfsema, C. M., Kovacs, E. M., Ortiz, J. C., Callaghan, D. P., Hock, K., Mongin, M., Johansen, K., Mumby, P. J., Wettle, M., Ronan, M., Lundgren, P., Kennedy, E. V. and Phinn, S. R., 2020. Habitat maps to enhance monitoring and management of the great barrier reef. Coral Reefs. for this particular dataset. See Callaghan, D. P., Leon, J. X. and Saunders, M. I., 2015. Wave modelling as a proxy for seagrass ecological modelling: Comparing fetch and process-based predictions for a bay and reef lagoon. Estuarine, Coastal and Shelf Science, 153: 108-120. on the methods used.
DOI: 10.48610/82ac313
title: Core Sorghum Breeding (Crop Wild Relatives-South East QLD in 2018)

description: Core Sorghum Breeding is focused on the development of sorghum breeding lines incorporating variation in traits predicted to improve productivity in the northern region combination with particular managements. Trial Codes: SCWRGAT18. Trial Types: Crop Wild Relatives. Site Names: Gatton. Site Year(s): 2018. Treatments: Genotype;. Variables: Height (cm) - Height from ground to tip of the head (Decimal); Days to Flower (days) - Days to flower (Integer); RUST (Score) - RUST Visual Rating 1=good, 9=bad (Integer);. Other Columns: TrialAcronym; TrialNumber; TrialStartDate; SiteName; Series; ReplicateNumber; column; row; PlotBarCode.Spatial coverage: GRDC Subregion: South East QLD
DOI: 10.48610/8402be1
title: Supplementary data SLR Automation

description: Supplementary data for the article “Examining the impacts of automation in the mining industry: A Systematic Review using Natural Language Processing."The supplemental data includes Appendix A which is the PRISMA Protocol for systematic literature review, and Appendix B is the final list of documents included in the systematic literature review. This spreadsheet also includes the description of the documents: topic related, country, reference type, research design, participant and the Critical Appraisal Checklists (CASP evaluation). These checklists were designed to be used as educational pedagogic tools, as part of a workshop setting, therefore we do not suggest a scoring system.
DOI: 10.6084/m9.figshare.31101613
title: Jiuzhaigou earthquake coseismic landslide dataset

description: These coseismic landslides were triggered by the 2017 Jiuzhaigou earthquake.
DOI: 10.6084/m9.figshare.31101613.v1
title: Jiuzhaigou earthquake coseismic landslide dataset

description: These coseismic landslides were triggered by the 2017 Jiuzhaigou earthquake.
DOI: 10.48610/8479e01
title: Chickpea trials

description: The project provided support to NACRA in terms of field trial design, data collection, and data analysis and interpretation for two seasons of chickpea trials in the Ord River Irrigation Area in Western Australia. The trials aimed to investigate the impacts of residual soil mineral N concentrations and quantities on chickpea nitrogen-fixation and productivity. The trials included research station and on-farm trials. The trial data, e.g., soil mineral nitrogen levels, chickpea biomass production and yield, and tissue nitrogen content, was generated by NACRA (please contact NACRA for access to these data sets). However, the project generated its own data by calculating derived variables, for example quantifying the proportion and quantity of chickpea nitrogen derived from the atmosphere, i.e., biological N-fixation. These derived variables are provided in this dataset.
DOI: 10.15468/dl.bb7ycy
title: Occurrence Download

description: A dataset containing 798893 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Living Specimen, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Fraxinus excelsior",
 "Year 2000-2026"
 ]
}

 The dataset includes 798893 records from 2763 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001306-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqmfv2
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polygonum aviculare",
 "Country is Belarus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 99 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024476-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xa82uq
title: Occurrence Download

description: A dataset containing 243 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "OccurrenceStatus is Present",
 "TaxonKey is Dioscorea melanophyma"
 ]
}

 The dataset includes 243 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024477-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28062617
title: Low Temperature Deposition of Functional Thin Films on Insulating Substrates Enabled by Selective Ion Acceleration using Synchronized Floating Potential HiPIMS

description: Complete dataset used in the manuscript: "Low Temperature Deposition of Functional Thin Films on Insulating Substrates Enabled by Selective Ion Acceleration using Synchronized Floating Potential HiPIMS"
DOI: 10.6084/m9.figshare.28062617.v1
title: Low Temperature Deposition of Functional Thin Films on Insulating Substrates Enabled by Selective Ion Acceleration using Synchronized Floating Potential HiPIMS

description: Complete dataset used in the manuscript: "Low Temperature Deposition of Functional Thin Films on Insulating Substrates Enabled by Selective Ion Acceleration using Synchronized Floating Potential HiPIMS"
DOI: 10.5281/zenodo.17672093
title: knmf_2022-029-031475_VSI_20251118_164155
DOI: 10.5281/zenodo.17672092
title: knmf_2022-029-031475_VSI_20251118_164155
DOI: 10.15468/dl.pmkyr4
title: Occurrence Download

description: A dataset containing 338 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((128.975 48.046,129.25 48.046,129.25 48.192,128.975 48.192,128.975 48.046))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 338 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002271-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17207143
title: Myelinated fiber labeling and orientation mapping of the human brain with light-sheet fluorescence microscopy

description: This dataset contains the raw data (light-sheet fluorescence microscopy) and the processed images for this work published in NeuroImage:

Myelinated fiber labeling and orientation mapping of the human brain with light-sheet fluorescence microscopy
DOI: 10.5281/zenodo.17207144
title: Myelinated fiber labeling and orientation mapping of the human brain with light-sheet fluorescence microscopy

description: This dataset contains the raw data (light-sheet fluorescence microscopy) and the processed images for this work published in NeuroImage:

Myelinated fiber labeling and orientation mapping of the human brain with light-sheet fluorescence microscopy
DOI: 10.5281/zenodo.17671976
title: Data and Codes for "Global oxygen distributions at the Earth's surface"

description: This repository contains the datasets and source code associated with the manuscript "Global oxygen distributions at the Earth’s surface" 

 

Contents



MATLAB scripts to reproduce all figures from the manuscript (Fig2.m, Fig3.m, Fig4.m, Fig5.m, Fig6.m, and Fig7.m)

A global dataset of oxygen molar fraction and oxygen partial pressure derived from ERA5 monthly mean data covering the period 1940-2024, provided as a netCDF file (oxygen_in_air_1940-2024.nc).


 

Data Processing

Raw ERA5 data are not included in this repository due to their large size and their public availability through the Copernicus Climate Data Store (CDS). 

For Figure 2, the molar fractions within moist air as a function of the water vapor were obtained based on the assumption that oxygen conforms 20.946 ± 0.006%. Error bars reflect possible deviations of up to ±60 ppm in dry-air O₂ due to biological and oxidation processes.

For Figures 3-4, oxygen molar fractions were calculated using the ensemble mean and ensemble spread products from hourly ERA5 data for the specific dates described in the manuscript.

Figures 5, 6, and 7 were generated using the reanalysis product type from the same hourly ERA5 dataset. Data for these figures was retrieved every 3 hours (00, 03, 06, 09, 12, 15, 18, and 21 UTC). Annual average for Figure 7 was calculated using Climate Data Operators (CDO) v2.0.5 and postprocessed with the MATLAB code provided in this repository.

Finally, the global dataset was constructed with the same procedure but using ERA5 monthly means, with consistency verified against results from weighted statistics.

Contact

For further information, please contact: mgvaldecasas@ugr.es
DOI: 10.5281/zenodo.17671977
title: Data and Codes for "Global oxygen distributions at the Earth's surface"

description: This repository contains the datasets and source code associated with the manuscript "Global oxygen distributions at the Earth’s surface" 

 

Contents



MATLAB scripts to reproduce all figures from the manuscript (Fig2.m, Fig3.m, Fig4.m, Fig5.m, Fig6.m, and Fig7.m)

A global dataset of oxygen molar fraction and oxygen partial pressure derived from ERA5 monthly mean data covering the period 1940-2024, provided as a netCDF file (oxygen_in_air_1940-2024.nc).


 

Data Processing

Raw ERA5 data are not included in this repository due to their large size and their public availability through the Copernicus Climate Data Store (CDS). 

For Figure 2, the molar fractions within moist air as a function of the water vapor were obtained based on the assumption that oxygen conforms 20.946 ± 0.006%. Error bars reflect possible deviations of up to ±60 ppm in dry-air O₂ due to biological and oxidation processes.

For Figures 3-4, oxygen molar fractions were calculated using the ensemble mean and ensemble spread products from hourly ERA5 data for the specific dates described in the manuscript.

Figures 5, 6, and 7 were generated using the reanalysis product type from the same hourly ERA5 dataset. Data for these figures was retrieved every 3 hours (00, 03, 06, 09, 12, 15, 18, and 21 UTC). Annual average for Figure 7 was calculated using Climate Data Operators (CDO) v2.0.5 and postprocessed with the MATLAB code provided in this repository.

Finally, the global dataset was constructed with the same procedure but using ERA5 monthly means, with consistency verified against results from weighted statistics.

Contact

For further information, please contact: mgvaldecasas@ugr.es
DOI: 10.5281/zenodo.17668821
title: Supplemental dataset for "How do cold pools influence the size of tropical cyclone embryos?"

description: This dataset is supplemental material to the manuscript "How do cold pools influence the size of tropical cyclone embryos?," which has been submitted to the Journal of the Atmospheric Sciences. 

movie_Fig2.mp4: A movie version of Fig2 that show the horizontal anomaly of midlevel water vapor mixing ratio (first row), near-surface water vapor mixing ratio (second row), and near-surface potential temperature (third row). The first, second, and third column shows the result of Ev=0.2, 1, and 2.5 CM1 simulations, respectively.

Fig. S1: Comparison between the longwave radiative heating rate and surface sensible heating rate in cold pool regions, using the Ev=1 experiment at t=2.5 days and showing the 100 km x 100 km southwest corner of the domain. (a) The total radiative heating rate (shortwave plus longwave) vertically averaged from 0 to z=281.6 m (the lowest four model levels), which is roughly the cold pool height (half the mixed layer depth). The nonuniform vertical grid spacing is considered using a trapezoidal integral. The air density is assumed vertically uniform for simplicity. We find but do not show here that the lowest model level contributes a considerable positive longwave heating rate, but the 2-4th vertical levels contribute to negative longwave heating rate. (b) The effective sensible heating rate is calculated by dividing the surface sensible heat flux by z=281.6 m. In cold pool regions (where the surface sensible heating rate is anomalously high), the total radiative heating rate (~0.5 K/day) is much smaller than the effective sensible heating rate (~3 K/day).  

Fig. S2: The lowest model level (z=25m) - sea surface temperature (300 K) difference ∆θ in the southwest 100 km x 100 km corner of (a) Ev=0.2, (b) Ev=1, and (c) Ev=2.5 CM1 simulations.

 

postprocessing_codes.zip: The postprocessing codes. 

- The script coldpool_size.m diagnoses the mean cold pool size and stores the result in R_array.mat. It plots the mean cold pool ize (Fig. A1) and the flow field (Figs. 2 and 3). 

- The script spectrum.m performs the Fourier analysis and stores the result in spectrum_length_scale.mat. It also plots the spectrum as Fig. 4. 

- The script theory.m reads R_array.mat and spectrum_length_scale.mat and calculates the nonlocal length scale. It plots Figs. 6, 9, 10, 11, 12. 

- The script Fig8_chain_model_nondim.m is the numerical cloud chain model that plots Fig. 8.

- The script coldpool_movie.m plots figures for making a movie version of Fig. 2. 

- The script avi_test.m make the movie. 

 

If you have any questions, please don't hesitate to contact Dr. Hao Fu: haofu@nju.edu.cn
DOI: 10.5281/zenodo.14934511
title: Supplemental dataset for "How do cold pools influence the size of tropical cyclone embryos?"

description: This dataset is supplemental material to the manuscript "How do cold pools influence the size of tropical cyclone embryos?," which has been submitted to the Journal of the Atmospheric Sciences. 

movie_Fig2.mp4: A movie version of Fig2 that show the horizontal anomaly of midlevel water vapor mixing ratio (first row), near-surface water vapor mixing ratio (second row), and near-surface potential temperature (third row). The first, second, and third column shows the result of Ev=0.2, 1, and 2.5 CM1 simulations, respectively.

Fig. S1: Comparison between the longwave radiative heating rate and surface sensible heating rate in cold pool regions, using the Ev=1 experiment at t=2.5 days and showing the 100 km x 100 km southwest corner of the domain. (a) The total radiative heating rate (shortwave plus longwave) vertically averaged from 0 to z=281.6 m (the lowest four model levels), which is roughly the cold pool height (half the mixed layer depth). The nonuniform vertical grid spacing is considered using a trapezoidal integral. The air density is assumed vertically uniform for simplicity. We find but do not show here that the lowest model level contributes a considerable positive longwave heating rate, but the 2-4th vertical levels contribute to negative longwave heating rate. (b) The effective sensible heating rate is calculated by dividing the surface sensible heat flux by z=281.6 m. In cold pool regions (where the surface sensible heating rate is anomalously high), the total radiative heating rate (~0.5 K/day) is much smaller than the effective sensible heating rate (~3 K/day).  

Fig. S2: The lowest model level (z=25m) - sea surface temperature (300 K) difference ∆θ in the southwest 100 km x 100 km corner of (a) Ev=0.2, (b) Ev=1, and (c) Ev=2.5 CM1 simulations.

 

postprocessing_codes.zip: The postprocessing codes. 

- The script coldpool_size.m diagnoses the mean cold pool size and stores the result in R_array.mat. It plots the mean cold pool ize (Fig. A1) and the flow field (Figs. 2 and 3). 

- The script spectrum.m performs the Fourier analysis and stores the result in spectrum_length_scale.mat. It also plots the spectrum as Fig. 4. 

- The script theory.m reads R_array.mat and spectrum_length_scale.mat and calculates the nonlocal length scale. It plots Figs. 6, 9, 10, 11, 12. 

- The script Fig8_chain_model_nondim.m is the numerical cloud chain model that plots Fig. 8.

- The script coldpool_movie.m plots figures for making a movie version of Fig. 2. 

- The script avi_test.m make the movie. 

 

If you have any questions, please don't hesitate to contact Dr. Hao Fu: haofu@nju.edu.cn
DOI: 10.5281/zenodo.17671964
title: weecology/portal-forecasts: 2025-11-21

description: Weekly forecasts for the Portal Project rodent population data. This dataset contains automated forecasts generated using multiple ecological forecasting models for the Portal Project's long-term rodent population study site in Arizona, USA.
description: This release contains the latest automated forecasts from the Portal Project forecasting pipeline. The forecasts are generated weekly and include predictions for multiple rodent species at the Portal Project study site. Data includes both abundance and biomass forecasts with associated uncertainty estimates.
DOI: 10.15468/dl.smfgza
title: Occurrence Download

description: A dataset containing 133756 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prochilodus magdalenae"
 ]
}

 The dataset includes 133756 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002254-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17672155
title: knmf_2022-029-031475_CSM_20251119_161304
DOI: 10.5281/zenodo.17672154
title: knmf_2022-029-031475_CSM_20251119_161304
DOI: 10.15468/dl.9xbu7x
title: Occurrence Download

description: A dataset containing 1163880 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ondatra zibethicus"
 ]
}

 The dataset includes 1163880 records from 776 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002229-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17672033
title: Testing the response of Spiny toads to part-time and full time lighting at night

description: The dataset provides the activity data of wild caught male spiny toads (Bufo spinosus) recorded using videotracking in 1-m wide arenas. The experiment tested the response of toads to part-time and full time lighting at night in order to assess the interest of part-time lighting as a mitigation measure for light pollution. We recorded the distance travelled in the arena and the time spent in the shelter. Analyses were carried out in two ways by considering (1) 20-minutes slotes every 2-hours from 21:00 to 07:00, and (2) the periods when transitions occurred in the part-time treatment, i.e. when light were switched off and on. Behaviour was recorded 30' before and 30' after the transitions occurred respectively at 23;00 and  05:00