cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3622898_d11
title: Additional file 9: of Effects of drought and salt-stresses on gene expression in Caragana korshinskii seedlings revealed by RNA-seq

description: GO distribution of upregulated or downregulated DEGs in drought- and salt-treated C. korshinskii. GO functional classification annotation provides a gene list and gene number for every specific GO term. (XLS 89 kb)
DOI: 10.6084/m9.figshare.c.3622898_d10
title: Additional file 7: of Effects of drought and salt-stresses on gene expression in Caragana korshinskii seedlings revealed by RNA-seq

description: Functional annotation of DEGs and unknown DEGs in drought- and salt-treated C. korshinskii. Contigs with absolute values of |log2Ratio| â Ľ1 and FDR â ¤0.05 were identified as DEGs. (XLS 830 kb)
DOI: 10.6084/m9.figshare.c.3622898_d9
title: Additional file 17: of Effects of drought and salt-stresses on gene expression in Caragana korshinskii seedlings revealed by RNA-seq

description: DEGs upregulated or downregulated in both drought- and salt-treated C. korshinskii expressed in Arabidopsis datasets. (XLS 211 kb)
DOI: 10.6084/m9.figshare.c.3622898_d7
title: Additional file 16: of Effects of drought and salt-stresses on gene expression in Caragana korshinskii seedlings revealed by RNA-seq

description: Similarities and differences analysis of contigs between C. korshinskii and Arabidopsis datasets. (XLS 777 kb)
DOI: 10.6084/m9.figshare.c.3622898_d5
title: Additional file 12: of Effects of drought and salt-stresses on gene expression in Caragana korshinskii seedlings revealed by RNA-seq

description: Candidate functional genes involved in drought and salt tolerance in C. korshinskii. Among those functional genes, 171 contigs were upregulated and 170 contigs were downregulated in drought-treated C. korshinskii, while 100 contigs were upregulated and 189 contigs were downregulated in salt-treated C. korshinskii. (XLS 222 kb)
DOI: 10.6084/m9.figshare.c.3622898_d4
title: Additional file 20: of Effects of drought and salt-stresses on gene expression in Caragana korshinskii seedlings revealed by RNA-seq

description: Related transcription factors and DEGs expressed in both C. korshinskii and Arabidopsis. (XLS 101 kb)
DOI: 10.6084/m9.figshare.c.3622898_d2
title: Additional file 19: of Effects of drought and salt-stresses on gene expression in Caragana korshinskii seedlings revealed by RNA-seq

description: Primers of 38 contigs used to confirm the sequencing quality. (XLS 24 kb)
DOI: 10.6084/m9.figshare.c.3622898_d3
title: Additional file 11: of Effects of drought and salt-stresses on gene expression in Caragana korshinskii seedlings revealed by RNA-seq

description: Summary of upregulated or downregulated DEGs in drought- and salt-treated C. korshinskii enriched in KEGG pathways. The FDR values for all pathways are less than or equal to 0.05. (XLS 30 kb)
DOI: 10.6084/m9.figshare.c.3622898_d1
title: Additional file 5: of Effects of drought and salt-stresses on gene expression in Caragana korshinskii seedlings revealed by RNA-seq

description: Functional annotation of all contigs and RPKM expression values. The all-contigs set was used to search protein databases (nr, GO, Swiss-Prot, KEGG, COG, and InterProScan) using BLASTX (E-value &lt;10â  5). (XLS 14509 kb)
DOI: 10.15468/dl.7fzf85
title: Occurrence Download

description: A dataset containing 788 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "Geometry POLYGON((-356.71345 51.48967,-364.73032 48.92506,-363.17148 39.54163,-344.24277 39.88424,-336.89397 49.79526,-331.10401 66.64268,-345.8016 66.81863,-356.71345 51.48967))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Equus Linnaeus, 1758",
 "Year 2021-2021"
 ]
}

 The dataset includes 788 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032174-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bh343g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelamys orientalis Temminck & Schlegel, 1844",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032175-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3622709_d9
title: Additional file 10: Table S9. of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases

description: Significant associations between DNA methylation and corresponding nearby genetic variants and between the genetic variant and CRP in the largest published GWAS of CRP (nâ  =â  66,185). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3622730_d8
title: Additional file 1: of Mapping and validation of major quantitative trait loci for kernel length in wild barley (Hordeum vulgare ssp. spontaneum)

description: Phenotypic performance of barley kernel length of Baudin/Awcs276 recombinant inbred lines (RILs) population. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3622730_d7
title: Additional file 2: of Mapping and validation of major quantitative trait loci for kernel length in wild barley (Hordeum vulgare ssp. spontaneum)

description: Analysis of variance (ANOVA) for kernel length of the Baudin/Awcs276 recombinant inbred line (RILs) population over the three years. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3622709_d8
title: Additional file 7: Table S6. of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases

description: Association results of the 58 replicated hits in CD4+ cells in the GOLDN study. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3622730_d6
title: Additional file 11: of Mapping and validation of major quantitative trait loci for kernel length in wild barley (Hordeum vulgare ssp. spontaneum)

description: Genotyping of the Baudin/Awcs276 recombinant inbred line (RILs) population using the markers ABG453 and HVM40. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3622730_d5
title: Additional file 7: of Mapping and validation of major quantitative trait loci for kernel length in wild barley (Hordeum vulgare ssp. spontaneum)

description: Information for high-resolution melt (HRM) markers developed based on the linkage genome-wide diversity array technology (DArT) markers. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3622709_d6
title: Additional file 3: Table S3. of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases

description: Discovery and replication results of the 218 significant associations in the discovery population. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3622730_d4
title: Additional file 12: of Mapping and validation of major quantitative trait loci for kernel length in wild barley (Hordeum vulgare ssp. spontaneum)

description: Mapping positions of the markers ABG453 and HVM40 on linkage group (LG) 4 and LG6. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3622730_d3
title: Additional file 9: of Mapping and validation of major quantitative trait loci for kernel length in wild barley (Hordeum vulgare ssp. spontaneum)

description: Genotyping information of the Fleet/Awcs276 recombinant inbred line (RILs) population. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3622709_d5
title: Additional file 5: Table S5. of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases

description: Meta-analysis results including all European and African-American whole blood studies. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3622712_d4
title: Additional file 4: Table S4. of Quantitative proteomic analysis for novel biomarkers of buccal squamous cell carcinoma arising in background of oral submucous fibrosis

description: GO analysis was done for 30 differential proteins from BSCC to OSF to NBM. There are 3 excel files in the supplement table S4. No. 1 is “go indexe by GO_molecular_ function”, which presents that in the molecular function protein binding contains the most proteins. No. 2 is “go indexe by GO_biological_process”, which presents that in the biological process cell redox homeostasis contains the most proteins. No. 3 is “go indexe by GO_cell_component”, which presents that in the cell component cytoplasm contains the most proteins. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3622730_d2
title: Additional file 5: of Mapping and validation of major quantitative trait loci for kernel length in wild barley (Hordeum vulgare ssp. spontaneum)

description: Genotyping information of the Baudin/Awcs276 recombinant inbred line (RILs) population. (XLSX 1007 kb)
DOI: 10.6084/m9.figshare.c.3622730_d1
title: Additional file 3: of Mapping and validation of major quantitative trait loci for kernel length in wild barley (Hordeum vulgare ssp. spontaneum)

description: Average kernel length of the Baudin/Awcs276 recombinant inbred line (RILs) population. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3622712_d3
title: Additional file 2: Table S2. of Quantitative proteomic analysis for novel biomarkers of buccal squamous cell carcinoma arising in background of oral submucous fibrosis

description: There are four excel files in the supplement table S2. No. 1 is “total proteins”, which presents all identified proteins among NBM, OSF and BSCC. No.2 is “DP-(115–117)”, which presents the differential proteins identified between OSF (115) and NBM (117). Red proteins mean the upregulated differential proteins in OSF with the change fold (115:117) &gt; 2, while the blue proteins mean the downregulated proteins in OSF with the change fold (115:117)
DOI: 10.6084/m9.figshare.c.3622712_d2
title: Additional file 3: Table S3. of Quantitative proteomic analysis for novel biomarkers of buccal squamous cell carcinoma arising in background of oral submucous fibrosis

description: KEGG pathway analysis was done for 30 differential proteins from BSCC to OSF to NBM. There are 2 excel files in the supplement table S3. No. 1 is “pathway indexe by Pathway_kegg”, which presents 32 pathways in total 30 proteins and the pathway of Systemic lupus erythematosus contains the most proteins. No. 2 is “pathway indexe by Symbol”, which presents ADH4 contains the most pathways. (XLS 22 kb)
DOI: 10.6084/m9.figshare.c.3622709_d2
title: Additional file 8: Table S7. of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases

description: Associations of the replicated loci with nine cardiometabolic phenotypes. Significant CpG-phenotype associations are highlighted in yellow. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3622712_d1
title: Additional file 1: Table S1. of Quantitative proteomic analysis for novel biomarkers of buccal squamous cell carcinoma arising in background of oral submucous fibrosis

description: Age, TNM grade, UICC classification, BSCC histological grade, OSF histological grade, survival status and time, and the IHC expression of ANXA4 and FLNA were recorded as the clinicopathological data of 94 cases.
DOI: 10.6084/m9.figshare.c.3622709_d1
title: Additional file 9: Table S8. of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases

description: Significant methylation-expression results and corresponding expression-CRP results for the replicated CpGs. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3622559_d1
title: Additional file 1: of Combined ultrasound-guided cutting-needle biopsy and standard pleural biopsy for diagnosis of malignant pleural effusions

description: Excel: Detailed results of CNB, SPB, CNB or SPB of the 17 2 UPE patients. (XLS 33Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d16
title: Additional file 11: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Protein sequences of the ABCG transporters of the eight species. (FA 126Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d15
title: Additional file 12: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Protein sequences of the ABCH transporters of the seven species except H. sapiens. (FA 54Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d13
title: Additional file 14: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Log2 RPKM values of 82 PxABCs in larvae of the susceptible strain and two insecticide (chlorpyrifos and fipronil)-resistant strains of P. xylostella. (FA 172Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d14
title: Additional file 8: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Protein sequences of the ABCD transporters of the eight species. (FA 80Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d12
title: Additional file 2: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Protein sequences of the 19 ABC transporter fragments of P. xylostella. (FA 78Â kb)
DOI: 10.15468/dl.yhfeem
title: Occurrence Download

description: A dataset containing 5692 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stenella longirostris (Gray, 1828)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5692 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032176-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3622484_d10
title: Additional file 3: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Phylogenetic tree and gene structure of ABCs in P. xylostella. The left side of the figure presents the phylogenetic relationship among ABC transporters in P. xylostella and the right, the corresponding gene structures. The green bars represent exons, and black lines represent introns. The digits (0, 1 and 2) on each of the black lines represent three different phases of the introns existed in eukaryotic genes. The length of genes is measured with a scale on the bottom right. Protein sequences used for phylogenetic analysis are provided in the Additional file 1. (FA 30Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d8
title: Additional file 16: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Expression profiles of 18 selected ABC genes in the susceptible strain and two insecticide (chlorpyrifos and fipronil)-resistant strains of P. xylostella as determined by qRT-PCR. X axis: samples; Y axis: relative expression values; 3-rd: third day of the 3rd-instar larvae; 4-th: third day of the 4th-instar larvae; Pupae: third day of the pupa stage; Males: virgin male adults; Females: virgin female adults; SS: susceptible strain; CRS: chlorpyrifos-resistant strains; FRS: fipronil-resistant strain. (FA 5Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d6
title: Additional file 9: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Protein sequences of the ABCE transporters of the eight species. (FA 7Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d5
title: Additional file 4: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Protein sequences of the ABCA transporters of the eight species. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.c.3622490_d2
title: Additional file 2: of MicroRNA expression and gene regulation drive breast cancer progression and metastasis in PyMT mice

description: Supplementary tables. (XLSX 1081 kb)
DOI: 10.6084/m9.figshare.c.3622484_d3
title: Additional file 15: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Expression profiles of 18 selected ABC genes at different developmental stages of the susceptible P. xylostella as determined by qRT-PCR. X axis: samples; Y axis: relative expression values; E: eggs; 11: the 1st-instar larvae; 21–22: first and second day of the 2nd-instar larvae; 31–32: first and third day of the 3rd-instar larvae; 41–44: each day of the 4th-instar larvae; P1-p4: each day of pupa stage; AM: virgin male adult; AF: virgin female adult; A*M: post-mating male adult; A*F: post-mating female adult. (FA 12 kb)
DOI: 10.6084/m9.figshare.c.3622484_d4
title: Additional file 1: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Protein sequences of the 82 ABC transporters of P. xylostella. (FA 17Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d2
title: Additional file 13: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Log2 RPKM values of 82 PxABCs at different developmental stages and in different tissues of the susceptible P. xylostella. (FA 27Â kb)
DOI: 10.6084/m9.figshare.c.3622484_d1
title: Additional file 5: of Characterization and expression profiling of ATP-binding cassette transporter genes in the diamondback moth, Plutella xylostella (L.)

description: Protein sequences of the full ABCB transporters of the eight species. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3622376_d2
title: Additional file 3: of Comparative transcript profiling of resistant and susceptible peanut post-harvest seeds in response to aflatoxin production by Aspergillus flavus

description: Summary of GO, KOG, and KEGG classifications of the assembled unigenes. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3622376_d1
title: Additional file 7: of Comparative transcript profiling of resistant and susceptible peanut post-harvest seeds in response to aflatoxin production by Aspergillus flavus

description: Pearson correlation analysis between samples. (RAR 473 kb)
DOI: 10.6084/m9.figshare.c.3622220_d17
title: Additional file 3: of The unique transcriptional response produced by concurrent estrogen and progesterone treatment in breast cancer cells results in upregulation of growth factor pathways and switching from a Luminal A to a Basal-like subtype

description: Assessment of receptor negative cells for E2-mediated PR upregulation. Relative steady state levels of ERα, PR-A, PR-B, AR and the ERα regulated gene CTSD and PR regulated gene FKBP5 in the ERα and PR negative breast cancer cells BT-20, MDA-MB-231 and MDA-MB-453 treated for 16 h with ethanol (v.c.), 10nM DHT, 10nM P4 and 10nM E2. (XLS 760 kb)
DOI: 10.6084/m9.figshare.c.3622220_d16
title: Additional file 7: of The unique transcriptional response produced by concurrent estrogen and progesterone treatment in breast cancer cells results in upregulation of growth factor pathways and switching from a Luminal A to a Basal-like subtype

description: Significantly enriched pathways in response to hormonal treatments in ZR-75-1 cells. (XLS 10 kb)
DOI: 10.6084/m9.figshare.c.3622220_d14
title: Additional file 14: of The unique transcriptional response produced by concurrent estrogen and progesterone treatment in breast cancer cells results in upregulation of growth factor pathways and switching from a Luminal A to a Basal-like subtype

description: Significantly enriched pathways in response to a timecourse of P4 treatment in E2 pretreated ZR-75-1 cells. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3622220_d15
title: Additional file 5: of The unique transcriptional response produced by concurrent estrogen and progesterone treatment in breast cancer cells results in upregulation of growth factor pathways and switching from a Luminal A to a Basal-like subtype

description: Genes significantly regulated by hormonal treatments in comparison to VC in T-47D cells. (XLS 233 kb)
DOI: 10.6084/m9.figshare.c.3622220_d13
title: Additional file 8: Figure S2. of The unique transcriptional response produced by concurrent estrogen and progesterone treatment in breast cancer cells results in upregulation of growth factor pathways and switching from a Luminal A to a Basal-like subtype

description: Validation of the 4 independent ChIP assays that were pooled for ChIP-sequencing. (XLS 884 kb)
DOI: 10.6084/m9.figshare.c.3622220_d12
title: Additional file 1: of The unique transcriptional response produced by concurrent estrogen and progesterone treatment in breast cancer cells results in upregulation of growth factor pathways and switching from a Luminal A to a Basal-like subtype

description: Sequences of Primers used in this report. (XLS 11 kb)
DOI: 10.6084/m9.figshare.c.3622220_d10
title: Additional file 2: of The unique transcriptional response produced by concurrent estrogen and progesterone treatment in breast cancer cells results in upregulation of growth factor pathways and switching from a Luminal A to a Basal-like subtype

description: Validation of binding sites by peak height in independent samples.ZR-75-1 cells were plated, treated, ChIP and subjected to RT-qPCR as described in materials and methods. (XLS 1611 kb)
DOI: 10.6084/m9.figshare.c.3622220_d11
title: Additional file 16: of The unique transcriptional response produced by concurrent estrogen and progesterone treatment in breast cancer cells results in upregulation of growth factor pathways and switching from a Luminal A to a Basal-like subtype

description: SIgnificantly enriched pathways by gene response cluster. (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3622220_d9
title: Additional file 4: of The unique transcriptional response produced by concurrent estrogen and progesterone treatment in breast cancer cells results in upregulation of growth factor pathways and switching from a Luminal A to a Basal-like subtype

description: Genes significantly regulated by hormonal treatments in comparison to VC treatment in ZR-75-1 cells. (XLS 356 kb)
DOI: 10.6084/m9.figshare.c.3622220_d7
title: Additional file 15: of The unique transcriptional response produced by concurrent estrogen and progesterone treatment in breast cancer cells results in upregulation of growth factor pathways and switching from a Luminal A to a Basal-like subtype

description: SIgnificantly enriched pathways in response to 4 hours of P4 treatment in E2 pretreated cells. (XLS 22 kb)
DOI: 10.6084/m9.figshare.c.3622220_d8
title: Additional file 11: of The unique transcriptional response produced by concurrent estrogen and progesterone treatment in breast cancer cells results in upregulation of growth factor pathways and switching from a Luminal A to a Basal-like subtype

description: Motif enrichment in the ZR-75-1 ChIP-sequencing datasets. (XLS 11 kb)
DOI: 10.6084/m9.figshare.c.3622220_d6
title: Additional file 17: of The unique transcriptional response produced by concurrent estrogen and progesterone treatment in breast cancer cells results in upregulation of growth factor pathways and switching from a Luminal A to a Basal-like subtype

description: Assessment of the Estrogen primed, progesterone regulation of PAM50 genes. (XLS 386 kb)
DOI: 10.6084/m9.figshare.c.3622220_d5
title: Additional file 6: of The unique transcriptional response produced by concurrent estrogen and progesterone treatment in breast cancer cells results in upregulation of growth factor pathways and switching from a Luminal A to a Basal-like subtype

description: Significantly enriched pathways in response to hormonal treatment in T-47D cells. (XLS 41 kb)