cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.g5sbvf
title: Occurrence Download

description: A dataset containing 27994 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Répartition historique du loup en France métropolitaine"
 ]
}

 The dataset includes 27994 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018020-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8oj6pz
title: Occurrence Download

description: A dataset containing 5549320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5549320 records from 943 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004370-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qy9wsp
title: Occurrence Download

description: A dataset containing 1839 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Apeiba echinata Gaertn., Apeiba aspera Aubl., Apeiba macropetala Ducke, Apeiba petoumo Aubl., Apeiba hispida Gaertn., Apeiba discolor (Spreng.) G.Don)"
 ]
}

 The dataset includes 1839 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032045-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfxfy9
title: Occurrence Download

description: A dataset containing 1629 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psidium sartorianum (O.Berg) Nied."
 ]
}

 The dataset includes 1629 records from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279786-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.555dnd
title: Occurrence Download

description: A dataset containing 1036 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Pristimantis variabilis (Lynch, 1968)"
 ]
}

 The dataset includes 1036 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021500-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvk7q2
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-99.54194 27.44387,-99.54137 27.43098,-99.52164 27.43038,-99.52203 27.4458,-99.54194 27.44387))"
 ]
}

 The dataset includes 134 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0290679-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nqsq4k
title: Occurrence Download

description: A dataset containing 341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Valeriana rotundifolia Vill.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 341 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010074-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yirs0g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is 47608203",
 "TaxonKey is 19892282",
 "TaxonKey is 19892110",
 "TaxonKey is 19892321",
 "TaxonKey is 19893004",
 "TaxonKey is 19892293",
 "TaxonKey is 19891467",
 "TaxonKey is 19891464",
 "TaxonKey is 19892735",
 "TaxonKey is 19892404"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011166-190918142434337/datasets/export for details.
DOI: 10.15468/dl.ezngp4
title: Occurrence Download

description: A dataset containing 21773 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((118.98152168266303 21.901096614567063,122.98152168266303 21.901096614567063,122.98152168266303 25.901096614567063,118.98152168266303 25.901096614567063,118.98152168266303 21.901096614567063))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Calidris ruficollis (Pallas, 1776)"
 ]
}

 The dataset includes 21773 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252369-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sf9zdd
title: Occurrence Download

description: A dataset containing 38569 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudacris regilla (Baird & Girard, 1852)"
 ]
}

 The dataset includes 38569 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066241-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qxefyg
title: Occurrence Download

description: A dataset containing 3484 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hydrochoerus hydrochaeris (Linnaeus, 1766)"
 ]
}

 The dataset includes 3484 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011175-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjfm4j
title: Occurrence Download

description: A dataset containing 1999 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 8.222185951984",
 "DecimalLongitude is less than 8.22524550516839",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 1999 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007041-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mu7beh
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Timor-Leste",
 "TaxonKey is Eucalyptus urophylla S.T.Blake"
 ]
}

 The dataset includes 41 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038011-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bcpjyp
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera onca onca"
 ]
}

 The dataset includes 48 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010075-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.45q27e
title: Occurrence Download

description: A dataset containing 49339 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((-119.04613 31.58741,-97.07909 9.67181,-78.40453 6.32788,-75.98661 36.26891,-119.04613 31.58741))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Icterus pectoralis (Wagler, 1829)"
 ]
}

 The dataset includes 49339 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066231-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qyde3r
title: Occurrence Download

description: A dataset containing 1545579 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Marattia Sw., Osmunda L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Osmunda L., Osmunda L., Osmunda L., Osmunda L., Osmunda L., Osmunda L., Osmunda L., Osmunda L., Osmunda L., Osmunda L., Osmunda L., Osmunda L., Cheiropleuria C.Presl, Cheiropleuria C.Presl, Cheiropleuria C.Presl, Marattia Sw., Marattia Sw., Marattia Sw., Marattia Sw., Marattia Sw., Marattia Sw., Marattia Sw., Ptisana Murdock, Ptisana Murdock, Ptisana Murdock, Ptisana Murdock, Ptisana Murdock, Ptisana Murdock, Ptisana Murdock, Ptisana Murdock, Ptisana Murdock, Ptisana Murdock, Ptisana Murdock, Ptisana Murdock, Marattia Sw., Marattia Sw., Ptisana Murdock, Ptisana Murdock, Ptisana Murdock, Ptisana Murdock, Ptisana Murdock, Ptisana Murdock, Ptisana Murdock, Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Dipteris Reinw., Dipteris Reinw., Dipteris Reinw., Dipteris Reinw., Dipteris Reinw., Dipteris Reinw., Dipteris Reinw., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Equisetum L., Osmunda L., Osmunda L., Taiwania Hayata, Cunninghamia R.Br., Cunninghamia R.Br., Leptopteris C.Presl, Leptopteris C.Presl, Todea Willd., Leptopteris C.Presl, Leptopteris C.Presl)",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation, Literature Occurrence, Material sample, Specimen, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1545579 records from 1486 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273782-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.8215274
title: Additional file 3: of Dysbiosis of the intestinal microbiota in neurocritically ill patients and the risk for death

description: Clinical information of all patients in the neuroICU group in this study. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.8215274.v1
title: Additional file 3: of Dysbiosis of the intestinal microbiota in neurocritically ill patients and the risk for death

description: Clinical information of all patients in the neuroICU group in this study. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.8215280
title: Additional file 4: of Dysbiosis of the intestinal microbiota in neurocritically ill patients and the risk for death

description: Îą-Diversities and taxa of all samples collected from neuroICU and HCs in this study. (XLSX 922 kb)
DOI: 10.6084/m9.figshare.8215280.v1
title: Additional file 4: of Dysbiosis of the intestinal microbiota in neurocritically ill patients and the risk for death

description: Îą-Diversities and taxa of all samples collected from neuroICU and HCs in this study. (XLSX 922 kb)
DOI: 10.6084/m9.figshare.8215349
title: Additional file 8: of Single-cell RNA sequencing reveals the impact of chromosomal instability on glioblastoma cancer stem cells

description: Table S1. Differentially expressed genes unadjusted for copy number. The column names refer to the T.score, T.test p value, Mann-Whitney U test p value, the log2 gene expression fold change and the average gene expression between GliNS2 and CB660 cells. Table S2. Copy number dependent differentially expressed genes. The column names that are labeled in green refer to the CNV unadjusted T.score, T.test p value, Mann-Whitney U test p value and the Bonferroni adjusted p value. The column names that are labeled in red refer to the CNV adjusted coefficient in the model, p value and adjusted p value. The column names that are labeled in blue refer to the pearson correlation coefficient between original gene expression and its estimated copy number, spearman correlation coefficient between original gene expression and its estimated copy number and the chromosome position of the genes. Table S3. Copy number independent differentially expressed genes. The column names that are labeled in green refer to the CNV unadjusted T.score, T.test p value, Mann-Whitney U test p value and the Bonferroni adjusted p value. The column names that are labeled in red refer to the CNV adjusted coefficient in the model, p value and adjusted p value. The column names that are labeled in blue refer to the pearson correlation coefficient between original gene expression and its estimated copy number, spearman correlation coefficient between original gene expression and its estimated copy number and the chromosome position of the genes. Table S4. Copy number adjusted differentially expressed genes enrichment. Gene ontology enrichment analysis of the CI genes. The column names refer to the gene ontology (GO) term, the number of genes in the GO term, the number of overlapped genes between CI genes and the GO term, the enrichment ratio of the GO term, the statistical significance of the enrichment (p value) and the statistical significance of the enrichment after multiple testing correction (p.adjust). Table S5. Genes enriched in negative regulation of cell cycle. The column names refer to the coefficient of the gene in the copy number adjusted model, the p value of each gene after copy number adjustment, the log2 gene fold change between GliNS2 and CB660 cells, the average gene expression between GliNS2 and CB660 cells, the Pearson and Spearman correlation between original gene expression and copy number variation, the position of each gene on the chromosome, the GO term ID and GO term name. Table S6. Dataset summary. Sample sizes for the five additional microarray gene expression datasets used to perform association analysis of clinical factors and prediction of patient survival. (XLSX 434 kb)
DOI: 10.6084/m9.figshare.8215349.v1
title: Additional file 8: of Single-cell RNA sequencing reveals the impact of chromosomal instability on glioblastoma cancer stem cells

description: Table S1. Differentially expressed genes unadjusted for copy number. The column names refer to the T.score, T.test p value, Mann-Whitney U test p value, the log2 gene expression fold change and the average gene expression between GliNS2 and CB660 cells. Table S2. Copy number dependent differentially expressed genes. The column names that are labeled in green refer to the CNV unadjusted T.score, T.test p value, Mann-Whitney U test p value and the Bonferroni adjusted p value. The column names that are labeled in red refer to the CNV adjusted coefficient in the model, p value and adjusted p value. The column names that are labeled in blue refer to the pearson correlation coefficient between original gene expression and its estimated copy number, spearman correlation coefficient between original gene expression and its estimated copy number and the chromosome position of the genes. Table S3. Copy number independent differentially expressed genes. The column names that are labeled in green refer to the CNV unadjusted T.score, T.test p value, Mann-Whitney U test p value and the Bonferroni adjusted p value. The column names that are labeled in red refer to the CNV adjusted coefficient in the model, p value and adjusted p value. The column names that are labeled in blue refer to the pearson correlation coefficient between original gene expression and its estimated copy number, spearman correlation coefficient between original gene expression and its estimated copy number and the chromosome position of the genes. Table S4. Copy number adjusted differentially expressed genes enrichment. Gene ontology enrichment analysis of the CI genes. The column names refer to the gene ontology (GO) term, the number of genes in the GO term, the number of overlapped genes between CI genes and the GO term, the enrichment ratio of the GO term, the statistical significance of the enrichment (p value) and the statistical significance of the enrichment after multiple testing correction (p.adjust). Table S5. Genes enriched in negative regulation of cell cycle. The column names refer to the coefficient of the gene in the copy number adjusted model, the p value of each gene after copy number adjustment, the log2 gene fold change between GliNS2 and CB660 cells, the average gene expression between GliNS2 and CB660 cells, the Pearson and Spearman correlation between original gene expression and copy number variation, the position of each gene on the chromosome, the GO term ID and GO term name. Table S6. Dataset summary. Sample sizes for the five additional microarray gene expression datasets used to perform association analysis of clinical factors and prediction of patient survival. (XLSX 434 kb)
DOI: 10.5281/zenodo.10680273
title: СРАВНИТЕЛЬНАЯ ОЦЕНКА АНТИБАКТЕРИАЛЬНОЙ ТЕРАПИИ ПРИ ОБОСТРЕНИИ ХРОНИЧЕСКОЙ ОБСТРУКТИВНОЙ БОЛЕЗНИ ЛЕГКИХ
DOI: 10.5281/zenodo.10680274
title: СРАВНИТЕЛЬНАЯ ОЦЕНКА АНТИБАКТЕРИАЛЬНОЙ ТЕРАПИИ ПРИ ОБОСТРЕНИИ ХРОНИЧЕСКОЙ ОБСТРУКТИВНОЙ БОЛЕЗНИ ЛЕГКИХ
DOI: 10.6084/m9.figshare.8215394
title: Additional file 2: of Characterization of a novel Helitron family in insect genomes: insights into classification, evolution and horizontal transfer

description: Table S1. List of copies of the Helitron based on searches of WGS database in C. suppressalis. Table S2. Estimates of evolutionary divergence between Hel1 transposon of 28 speices . The number of base differences per site from between sequences are shown. The analysis involved 34 nucleotide sequences. Codon positions included were 1st + 2nd + 3rd + Noncoding. All ambiguous positions were removed for each sequence pair. There were a total of 131 positions in the final dataset. Evolutionary analyses were conducted in MEGA7.0. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.8215394.v1
title: Additional file 2: of Characterization of a novel Helitron family in insect genomes: insights into classification, evolution and horizontal transfer

description: Table S1. List of copies of the Helitron based on searches of WGS database in C. suppressalis. Table S2. Estimates of evolutionary divergence between Hel1 transposon of 28 speices . The number of base differences per site from between sequences are shown. The analysis involved 34 nucleotide sequences. Codon positions included were 1st + 2nd + 3rd + Noncoding. All ambiguous positions were removed for each sequence pair. There were a total of 131 positions in the final dataset. Evolutionary analyses were conducted in MEGA7.0. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.8215409
title: Additional file 4: of Characterization of a novel Helitron family in insect genomes: insights into classification, evolution and horizontal transfer

description: Data S3. The list of the analyzed species and corresponding amount of sequence data. (XLSX 2613 kb)
DOI: 10.6084/m9.figshare.8215409.v1
title: Additional file 4: of Characterization of a novel Helitron family in insect genomes: insights into classification, evolution and horizontal transfer

description: Data S3. The list of the analyzed species and corresponding amount of sequence data. (XLSX 2613 kb)
DOI: 10.6084/m9.figshare.24037211
title: Additional file 2 of Single-cell resolution analysis reveals the preparation for reprogramming the fate of stem cell niche in cotton lateral meristem

description: Additional file 2: Table S1. Number of cells identified in our single cell data. The same cell types of Jin668 and TM-1 were aligned one by one.
DOI: 10.6084/m9.figshare.24037211.v1
title: Additional file 2 of Single-cell resolution analysis reveals the preparation for reprogramming the fate of stem cell niche in cotton lateral meristem

description: Additional file 2: Table S1. Number of cells identified in our single cell data. The same cell types of Jin668 and TM-1 were aligned one by one.
DOI: 10.6084/m9.figshare.17128368
title: Cytochrome P450s in plant terpenoid biosynthesis: discovery, characterization and metabolic engineering

description: As the largest family of natural products, terpenoids play valuable roles in medicine, agriculture, cosmetics and food. However, the traditional methods that rely on direct extraction from the original plants not only produce low yields, but also result in waste of resources, and are not applicable at all to endangered species. Modern heterologous biosynthesis is considered a promising, efficient, and sustainable production method, but it relies on the premise of a complete analysis of the biosynthetic pathway of terpenoids, especially the functionalization processes involving downstream cytochrome P450s. In this review, we systematically introduce the biotech approaches used to discover and characterize plant terpenoid-related P450s in recent years. In addition, we propose corresponding metabolic engineering approaches to increase the effective expression of P450 and improve the yield of terpenoids, and also elaborate on metabolic engineering strategies and examples of heterologous biosynthesis of terpenoids in <i>Saccharomyces cerevisiae</i> and plant hosts. Finally, we provide perspectives for the biotech approaches to be developed for future research on terpenoid-related P450.
DOI: 10.6084/m9.figshare.17128368.v1
title: Cytochrome P450s in plant terpenoid biosynthesis: discovery, characterization and metabolic engineering

description: As the largest family of natural products, terpenoids play valuable roles in medicine, agriculture, cosmetics and food. However, the traditional methods that rely on direct extraction from the original plants not only produce low yields, but also result in waste of resources, and are not applicable at all to endangered species. Modern heterologous biosynthesis is considered a promising, efficient, and sustainable production method, but it relies on the premise of a complete analysis of the biosynthetic pathway of terpenoids, especially the functionalization processes involving downstream cytochrome P450s. In this review, we systematically introduce the biotech approaches used to discover and characterize plant terpenoid-related P450s in recent years. In addition, we propose corresponding metabolic engineering approaches to increase the effective expression of P450 and improve the yield of terpenoids, and also elaborate on metabolic engineering strategies and examples of heterologous biosynthesis of terpenoids in <i>Saccharomyces cerevisiae</i> and plant hosts. Finally, we provide perspectives for the biotech approaches to be developed for future research on terpenoid-related P450.