cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3561531
title: Data Paper. Data Paper

description: File List Amphibian-skin_bacteria_16S_sequences.fna (MD5: 4cc9026d1aaa6b3f2481a3094824ae84) Amphibian-skin_bacteria_metadata.txt (MD5: 85b14afa771fd80a6de294ea9b5f991c) Description Microbial symbionts of vertebrate skin have an important function in defense of the host against pathogens. In particular, the emerging chytrid fungus Batrachochytrium dendrobatidis, causes widespread disease in amphibians but can be inhibited via secondary metabolites produced by many different skin-associated bacteria. Similarly, the fungal pathogens of terrestrial salamander eggs Mariannaea elegans and Rhizomucor variabilis are also inhibited by a variety of skin-associated bacteria. Indeed, probiotic therapy against fungal diseases is a recent approach in conservation medicine with growing experimental support. We present a comprehensive Antifungal Isolates Database of amphibian skin-associated bacteria that have been cultured, isolated, and tested for antifungal properties. At the start, this database includes nearly 2000 cultured bacterial isolates from 37 amphibian host species across 18 studies on five continents: Africa, Oceania, Europe, and North and South America. As the research community gathers information on additional isolates, the database will be updated periodically. The resulting database can serve as a conservation tool for amphibians and other organisms, and provides empirical data for comparative and bioinformatic studies. The database consists of a FASTA file containing 16S rRNA gene sequences of the bacterial isolates, and a metadata file containing information on the host species, life-stage, geographic region, and antifungal capacity and taxonomic identity of the isolate. <i>Key words</i>: <i>amphibian; antifungal; Batrachochytrium dendrobatidis; culture database; disease ecology; microbiota; probiotic therapy; skin pathogens.</i>
DOI: 10.6084/m9.figshare.3561528
title: Data Paper. Data Paper

description: File List Life_history_data_of_lizards_of_the_world.txt.zip (MD5: 13aa07593aa81a05423bbd0ffc9392cc) Description Life is defined by a capacity for reproduction, yet the ways in which animals reproduce vary tremendously among species. Reproductive life histories are complex phenomena influenced by a variety of factors, such as physical condition of individuals, food supply, bauplan, and phylogenetic history, which are often correlated. Understanding life histories is crucial in evolutionary ecology, because they represent different strategies that evolved to maximize individual fitness. Variation in life history can be attributed to both historical (= phylogenetic) and non-historical (= environmental) causes. We compiled a large data set on lizard life history variables. Our data set consists of life history data for 737 lizard populations, representing 337 species in 33 families from 280 study sites globally. About 64% of these data were collected directly by the authors. Regarding data collected by authors, we sexed lizards by dissection and direct examination of gonads. Females were considered reproductive if vitellogenic follicles or oviductal eggs were present. We regarded the simultaneous presence of enlarged vitellogenic follicles and either oviductal eggs or corpora lutea as evidence for the sequential production of more than one clutch of eggs per year. We considered clutch size as the number of vitellogenic follicles or oviductal eggs in mature females. For each population, we recorded the following variables, if available: adult female mass (g), adult female SVL (mm), female SVL at maturity (based on SVL of smallest reproductive female), offspring SVL (based on hatchling size or smallest individual in population), clutch or litter size (number of offspring per clutch or litter for all reproductive females in the population), total number of clutches or litters per year, clutch frequency (single- or multiple-brooded), relative clutch or litter mass [total volume of eggs or embryos (cc) divided by adult female mass (g)], reproductive mode (oviparous or viviparous), foraging mode (sit-and-wait or active), distribution (tropical or temperate), and preferred habitat type (aquatic, arboreal, bromelicolous, fossorial, psammophilous, saxicolous, semi-arboreal, or terrestrial). These data are valuable to test various life history hypotheses, including phylogenetic design constraints and effects of ecology and climate on reproductive tactics. <i>Key words</i>: <i>ecology; reproduction; Squamata.</i>
DOI: 10.6084/m9.figshare.3561525
title: Appendix A. The effect of pollen exclusion on acorn production.

description: The effect of pollen exclusion on acorn production.
DOI: 10.6084/m9.figshare.3561525.v1
title: Appendix A. The effect of pollen exclusion on acorn production.

description: The effect of pollen exclusion on acorn production.
DOI: 10.6084/m9.figshare.3561522
title: Appendix A. Additional methodological details and results for the wet-sieving method.

description: Additional methodological details and results for the wet-sieving method.
DOI: 10.6084/m9.figshare.3561522.v1
title: Appendix A. Additional methodological details and results for the wet-sieving method.

description: Additional methodological details and results for the wet-sieving method.
DOI: 10.6084/m9.figshare.3561519
title: Appendix B. Additional shade-house experiment comparing the field soil treatment with the AMF + pathogen treatment.

description: Additional shade-house experiment comparing the field soil treatment with the AMF + pathogen treatment.
DOI: 10.6084/m9.figshare.3561519.v1
title: Appendix B. Additional shade-house experiment comparing the field soil treatment with the AMF + pathogen treatment.

description: Additional shade-house experiment comparing the field soil treatment with the AMF + pathogen treatment.
DOI: 10.6084/m9.figshare.3561516
title: Appendix C. Detailed procedures for root staining with trypan blue.

description: Detailed procedures for root staining with trypan blue.
DOI: 10.6084/m9.figshare.3561516.v1
title: Appendix C. Detailed procedures for root staining with trypan blue.

description: Detailed procedures for root staining with trypan blue.
DOI: 10.6084/m9.figshare.3561513
title: Appendix D. Additional seedling growth results.

description: Additional seedling growth results.
DOI: 10.6084/m9.figshare.3561513.v1
title: Appendix D. Additional seedling growth results.

description: Additional seedling growth results.
DOI: 10.6084/m9.figshare.3561510
title: Appendix A. Leaf litter decomposition rates in coarse and fine- mesh bags.

description: Leaf litter decomposition rates in coarse and fine- mesh bags.
DOI: 10.6084/m9.figshare.3561510.v1
title: Appendix A. Leaf litter decomposition rates in coarse and fine- mesh bags.

description: Leaf litter decomposition rates in coarse and fine- mesh bags.
DOI: 10.6084/m9.figshare.3561507
title: Appendix B. Results of mixed-effect models on the effects of trait dissimilarity on leaf decomposition.

description: Results of mixed-effect models on the effects of trait dissimilarity on leaf decomposition.
DOI: 10.6084/m9.figshare.3561507.v1
title: Appendix B. Results of mixed-effect models on the effects of trait dissimilarity on leaf decomposition.

description: Results of mixed-effect models on the effects of trait dissimilarity on leaf decomposition.
DOI: 10.6084/m9.figshare.3561504
title: Appendix C. Nitrogen and phosphorus dynamics after 42 days of litter exposure in a stream.

description: Nitrogen and phosphorus dynamics after 42 days of litter exposure in a stream.
DOI: 10.6084/m9.figshare.3561504.v1
title: Appendix C. Nitrogen and phosphorus dynamics after 42 days of litter exposure in a stream.

description: Nitrogen and phosphorus dynamics after 42 days of litter exposure in a stream.
DOI: 10.6084/m9.figshare.3561501
title: Appendix A. Supplementary figures and tables showing potential sampling biases within the original PBDB data set, the distribution of pairwise distances and corresponding beta indices within each stage, diversity indices using the Chao-2 estimators of shared unsampled taxa, rates of overall genus-level origination and extinction over both pulses of O-S mass extinction, and additional range size/effect size plots (including data for individual brachiopod genera).

description: Supplementary figures and tables showing potential sampling biases within the original PBDB data set, the distribution of pairwise distances and corresponding beta indices within each stage, diversity indices using the Chao-2 estimators of shared unsampled taxa, rates of overall genus-level origination and extinction over both pulses of O-S mass extinction, and additional range size/effect size plots (including data for individual brachiopod genera).
DOI: 10.6084/m9.figshare.3561501.v1
title: Appendix A. Supplementary figures and tables showing potential sampling biases within the original PBDB data set, the distribution of pairwise distances and corresponding beta indices within each stage, diversity indices using the Chao-2 estimators of shared unsampled taxa, rates of overall genus-level origination and extinction over both pulses of O-S mass extinction, and additional range size/effect size plots (including data for individual brachiopod genera).

description: Supplementary figures and tables showing potential sampling biases within the original PBDB data set, the distribution of pairwise distances and corresponding beta indices within each stage, diversity indices using the Chao-2 estimators of shared unsampled taxa, rates of overall genus-level origination and extinction over both pulses of O-S mass extinction, and additional range size/effect size plots (including data for individual brachiopod genera).
DOI: 10.6084/m9.figshare.3561498
title: Appendix A. Map of sampling sites across Europe and data selection method.

description: Map of sampling sites across Europe and data selection method.
DOI: 10.6084/m9.figshare.3561498.v1
title: Appendix A. Map of sampling sites across Europe and data selection method.

description: Map of sampling sites across Europe and data selection method.
DOI: 10.6084/m9.figshare.3561495
title: Appendix B. Table of all carabid beetle species in our data set and their characteristics.

description: Table of all carabid beetle species in our data set and their characteristics.
DOI: 10.6084/m9.figshare.3561495.v1
title: Appendix B. Table of all carabid beetle species in our data set and their characteristics.

description: Table of all carabid beetle species in our data set and their characteristics.
DOI: 10.6084/m9.figshare.3561492
title: Appendix C. Output for GLMM analyses testing for effects of trophic rank, dispersal ability, and body size on SAR.

description: Output for GLMM analyses testing for effects of trophic rank, dispersal ability, and body size on SAR.
DOI: 10.6084/m9.figshare.3561489
title: Appendix D. AIC scores for the generalized linear mixed models of activity density per habitat preference group.

description: AIC scores for the generalized linear mixed models of activity density per habitat preference group.
DOI: 10.6084/m9.figshare.3561489.v1
title: Appendix D. AIC scores for the generalized linear mixed models of activity density per habitat preference group.

description: AIC scores for the generalized linear mixed models of activity density per habitat preference group.
DOI: 10.6084/m9.figshare.3561486
title: Appendix E. Output for GLMM analysis to test for separate effect of trophic rank within medium/good dispersing species.

description: Output for GLMM analysis to test for separate effect of trophic rank within medium/good dispersing species.
DOI: 10.6084/m9.figshare.3561486.v1
title: Appendix E. Output for GLMM analysis to test for separate effect of trophic rank within medium/good dispersing species.

description: Output for GLMM analysis to test for separate effect of trophic rank within medium/good dispersing species.
DOI: 10.6084/m9.figshare.3561483
title: Appendix A. Mathematical rationale of the tradeoff function of branching angles that yields the maximum payoff.

description: Mathematical rationale of the tradeoff function of branching angles that yields the maximum payoff.
DOI: 10.6084/m9.figshare.3561483.v1
title: Appendix A. Mathematical rationale of the tradeoff function of branching angles that yields the maximum payoff.

description: Mathematical rationale of the tradeoff function of branching angles that yields the maximum payoff.
DOI: 10.6084/m9.figshare.3561480
title: Appendix B. ANOVA tables for the comparison of branching angles between colonies of Atta cephalotes and Atta colombica in different habitats, considering trails or colonies as replicates.

description: ANOVA tables for the comparison of branching angles between colonies of Atta cephalotes and Atta colombica in different habitats, considering trails or colonies as replicates.
DOI: 10.6084/m9.figshare.3561480.v1
title: Appendix B. ANOVA tables for the comparison of branching angles between colonies of Atta cephalotes and Atta colombica in different habitats, considering trails or colonies as replicates.

description: ANOVA tables for the comparison of branching angles between colonies of Atta cephalotes and Atta colombica in different habitats, considering trails or colonies as replicates.
DOI: 10.6084/m9.figshare.3561477
title: Appendix C. Description of the experimental approach.

description: Description of the experimental approach.
DOI: 10.6084/m9.figshare.3561477.v1
title: Appendix C. Description of the experimental approach.

description: Description of the experimental approach.
DOI: 10.6084/m9.figshare.3561474
title: Appendix A. Location of Lake Mývatn within Iceland, and location of sampling sites in/around the lake.

description: Location of Lake Mývatn within Iceland, and location of sampling sites in/around the lake.
DOI: 10.6084/m9.figshare.3561474.v1
title: Appendix A. Location of Lake Mývatn within Iceland, and location of sampling sites in/around the lake.

description: Location of Lake Mývatn within Iceland, and location of sampling sites in/around the lake.
DOI: 10.6084/m9.figshare.3561471
title: Appendix B. An illustration of the aquatic and terrestrial midge sampling scheme used to create our model.

description: An illustration of the aquatic and terrestrial midge sampling scheme used to create our model.
DOI: 10.6084/m9.figshare.3561471.v1
title: Appendix B. An illustration of the aquatic and terrestrial midge sampling scheme used to create our model.

description: An illustration of the aquatic and terrestrial midge sampling scheme used to create our model.
DOI: 10.6084/m9.figshare.3561465
title: Appendix C. Details on midge emerge rates from Lake Mývatn, Iceland during 2008–2011, with estimated total midge emergence during those years.

description: Details on midge emerge rates from Lake Mývatn, Iceland during 2008–2011, with estimated total midge emergence during those years.
DOI: 10.6084/m9.figshare.3561465.v1
title: Appendix C. Details on midge emerge rates from Lake Mývatn, Iceland during 2008–2011, with estimated total midge emergence during those years.

description: Details on midge emerge rates from Lake Mývatn, Iceland during 2008–2011, with estimated total midge emergence during those years.
DOI: 10.6084/m9.figshare.3561462
title: Appendix D. Details on the magnitude and pattern of midge infall around Lake Mývatn, Iceland 2008–2011.

description: Details on the magnitude and pattern of midge infall around Lake Mývatn, Iceland 2008–2011.
DOI: 10.6084/m9.figshare.3561462.v1
title: Appendix D. Details on the magnitude and pattern of midge infall around Lake Mývatn, Iceland 2008–2011.

description: Details on the magnitude and pattern of midge infall around Lake Mývatn, Iceland 2008–2011.
DOI: 10.6084/m9.figshare.3561459
title: Appendix E. Model coefficients, evaluation, and comparison to midge infall data collected at Lake Mývatn, 2008–2011.

description: Model coefficients, evaluation, and comparison to midge infall data collected at Lake Mývatn, 2008–2011.
DOI: 10.6084/m9.figshare.3561459.v1
title: Appendix E. Model coefficients, evaluation, and comparison to midge infall data collected at Lake Mývatn, 2008–2011.

description: Model coefficients, evaluation, and comparison to midge infall data collected at Lake Mývatn, 2008–2011.
DOI: 10.6084/m9.figshare.3561456
title: Appendix A. Tables summarizing the sampled sites and the analysis describing patterns in Gyrodactylus abundance.

description: Tables summarizing the sampled sites and the analysis describing patterns in Gyrodactylus abundance.
DOI: 10.6084/m9.figshare.3561453
title: Appendix B. Figures describing the spatial and temporal pattern in Gyrodactylus infection, predator species richness in each course, and the variation between individual sample sites in Gyrodactylus infection.

description: Figures describing the spatial and temporal pattern in Gyrodactylus infection, predator species richness in each course, and the variation between individual sample sites in Gyrodactylus infection.
DOI: 10.6084/m9.figshare.3561453.v1
title: Appendix B. Figures describing the spatial and temporal pattern in Gyrodactylus infection, predator species richness in each course, and the variation between individual sample sites in Gyrodactylus infection.

description: Figures describing the spatial and temporal pattern in Gyrodactylus infection, predator species richness in each course, and the variation between individual sample sites in Gyrodactylus infection.
DOI: 10.6084/m9.figshare.3561450
title: Supplement 1. Data and R script files for the analysis of parasite distribution among Trinidadian guppy populations.

description: File List Trini_data_analysis.R (MD5: 99b589044060d4c16baba6fc32d8781d) This is an R script file containing the code for the analysis presented in the paper. Trini_data.csv (MD5: be7932bc511ace2a80c82e84324e42d0) This is a .csv file containing all of the data used in the analysis presented in the paper. Below is a table explaining what each of the columns refers to. Description -- TABLE: Please see in attached file. --
DOI: 10.6084/m9.figshare.3561447
title: Appendix A. Posterior predictive checks.

description: Posterior predictive checks.
DOI: 10.6084/m9.figshare.3561447.v1
title: Appendix A. Posterior predictive checks.

description: Posterior predictive checks.
DOI: 10.6084/m9.figshare.3561444
title: Appendix A. Geography and identification of Campanulastrum americanum populations in this study.

description: Geography and identification of Campanulastrum americanum populations in this study.
DOI: 10.6084/m9.figshare.3561444.v1
title: Appendix A. Geography and identification of Campanulastrum americanum populations in this study.

description: Geography and identification of Campanulastrum americanum populations in this study.
DOI: 10.6084/m9.figshare.3561441
title: Appendix A. Additional statistical methods used to generate forest type classification, principal components scores for climate and tree stand parameters, and geographic and community distances.

description: Additional statistical methods used to generate forest type classification, principal components scores for climate and tree stand parameters, and geographic and community distances.
DOI: 10.6084/m9.figshare.3561438
title: Appendix B. Statistical results of geographic distance and community structure analyses with plots of MDS scores.

description: Statistical results of geographic distance and community structure analyses with plots of MDS scores.
DOI: 10.6084/m9.figshare.3561438.v1
title: Appendix B. Statistical results of geographic distance and community structure analyses with plots of MDS scores.

description: Statistical results of geographic distance and community structure analyses with plots of MDS scores.
DOI: 10.6084/m9.figshare.3561435
title: Appendix C. Table showing percent cover of tree species in each forest type cluster.

description: Table showing percent cover of tree species in each forest type cluster.
DOI: 10.6084/m9.figshare.3561435.v1
title: Appendix C. Table showing percent cover of tree species in each forest type cluster.

description: Table showing percent cover of tree species in each forest type cluster.
DOI: 10.6084/m9.figshare.3561432
title: Appendix D. Tables showing most significant principal components of principal components analyses of climate data, with figure showing change in climate parameters over the past 60 years.

description: Tables showing most significant principal components of principal components analyses of climate data, with figure showing change in climate parameters over the past 60 years.
DOI: 10.6084/m9.figshare.3561432.v1
title: Appendix D. Tables showing most significant principal components of principal components analyses of climate data, with figure showing change in climate parameters over the past 60 years.

description: Tables showing most significant principal components of principal components analyses of climate data, with figure showing change in climate parameters over the past 60 years.
DOI: 10.6084/m9.figshare.3561429
title: Appendix E. Table showing most significant principal components of principal components analysis of tree stand data, and figures showing relationship of tree stand characteristics with species richness.

description: Table showing most significant principal components of principal components analysis of tree stand data, and figures showing relationship of tree stand characteristics with species richness.
DOI: 10.6084/m9.figshare.3561429.v1
title: Appendix E. Table showing most significant principal components of principal components analysis of tree stand data, and figures showing relationship of tree stand characteristics with species richness.

description: Table showing most significant principal components of principal components analysis of tree stand data, and figures showing relationship of tree stand characteristics with species richness.
DOI: 10.6084/m9.figshare.3561426
title: Appendix F. Tables summarizing statistical results of regression of MFA dimensions with species richness and a summary of site characteristics that tend to be correlated with higher species richness.

description: Tables summarizing statistical results of regression of MFA dimensions with species richness and a summary of site characteristics that tend to be correlated with higher species richness.
DOI: 10.6084/m9.figshare.3561426.v1
title: Appendix F. Tables summarizing statistical results of regression of MFA dimensions with species richness and a summary of site characteristics that tend to be correlated with higher species richness.

description: Tables summarizing statistical results of regression of MFA dimensions with species richness and a summary of site characteristics that tend to be correlated with higher species richness.
DOI: 10.6084/m9.figshare.3561423
title: Appendix G. Figure showing relationship between species richness per site with latitude clustered within each order.

description: Figure showing relationship between species richness per site with latitude clustered within each order.
DOI: 10.6084/m9.figshare.3561423.v1
title: Appendix G. Figure showing relationship between species richness per site with latitude clustered within each order.

description: Figure showing relationship between species richness per site with latitude clustered within each order.
DOI: 10.6084/m9.figshare.3561420
title: Appendix A. Validation of the PHA skin swelling protocols.

description: Validation of the PHA skin swelling protocols.
DOI: 10.6084/m9.figshare.3561420.v1
title: Appendix A. Validation of the PHA skin swelling protocols.

description: Validation of the PHA skin swelling protocols.
DOI: 10.6084/m9.figshare.3561417
title: Appendix B. Path analyses.

description: Path analyses.
DOI: 10.6084/m9.figshare.3561417.v1
title: Appendix B. Path analyses.

description: Path analyses.
DOI: 10.6084/m9.figshare.3561414
title: Appendix C. Down regulation of skin swelling by the tick Ixodes ricinus.

description: Down regulation of skin swelling by the tick Ixodes ricinus.
DOI: 10.6084/m9.figshare.3561414.v1
title: Appendix C. Down regulation of skin swelling by the tick Ixodes ricinus.

description: Down regulation of skin swelling by the tick Ixodes ricinus.