cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7924/r4bz6fw61
title: Data from: Multi-modal investigation reveals pathogenic features of diverse DDX3X missense mutations.

description: De novo mutations in the RNA binding protein DDX3X cause neurodevelopmental disorders including DDX3X syndrome and autism spectrum disorder. Amongst ~200 mutations identified to date, half are missense. While DDX3X loss of function is known to impair neural cell fate, how the landscape of missense mutations impacts neurodevelopment is almost entirely unknown. Here, we integrate transcriptomics, proteomics, and live imaging to demonstrate clinically diverse DDX3X missense mutations perturb neural development via distinct cellular and molecular mechanisms. Using mouse primary neural progenitors, we investigate four recurrently mutated DDX3X missense variants, spanning clinically severe (2) to mild (2). While clinically severe mutations impair neurogenesis, mild mutations have only a modest impact on cell fate. Moreover, expression of severe mutations leads to profound neuronal death. Using a proximity labeling screen in neural progenitors, we discover DDX3X missense variants have unique protein interactors. We observe notable overlap amongst severe mutations, suggesting common mechanisms underlying altered cell fate and survival. Transcriptomic analysis and subsequent cellular investigation highlights new pathways associated with DDX3X missense variants, including upregulated DNA Damage Response. Notably, clinically severe mutations exhibit excessive DNA damage in neurons, associated with increased cytoplasmic DNA:RNA hybrids and formation of stress granules. These findings highlight aberrant RNA metabolism and DNA damage in DDX3X-mediated neuronal cell death. In sum our findings reveal new mechanisms by which clinically distinct DDX3X missense mutations differentially impair neurodevelopment.
DOI: 10.15468/dl.2fezqr
title: Occurrence Download

description: A dataset containing 3205 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alocasia macrorrhizos"
 ]
}

 The dataset includes 3205 records from 215 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004683-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17127563
title: Regulation in ecological systems: an overview - Supplementary material

description: List of 14 papers and 2 book chapters from which information was extracted on how ecologists have used the concept of regulation. The table has 10 columns, as follows:




Source
Database
Terms or expressions using regulat* throughout the text
Abstract
Description of the regulation process
Type of ecosystems
Organization level of description
Mechanism description
Control type
Explanation on the classification of control types
DOI: 10.15468/dl.yrvbwm
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Two new species and a new country record of the genus Achalinus (Reptilia Squamata: Xenodermidae) from China"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004684-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yjtngk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polyodon spathula",
 "Country is Belarus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004686-250914085247600/datasets/export for details.
DOI: 10.15468/dl.5xd6xy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polyodon spathula",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004685-250914085247600/datasets/export for details.
DOI: 10.15468/dl.5m6by7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polyodon spathula",
 "Country is Bulgaria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004687-250914085247600/datasets/export for details.
DOI: 10.15468/dl.af3g9u
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Phylogenetic relationships based on morphological data and taxonomy of the genus Salvadora Baird & Girard, 1853 (Reptilia, Colubridae)"
 ]
}

 The dataset includes 15 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004688-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.62du4z
title: Occurrence Download

description: A dataset containing 458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "TaxonKey is Abies pinsapo"
 ]
}

 The dataset includes 458 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004690-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13070573
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.uq3fts
title: Occurrence Download

description: A dataset containing 19214 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Occurrence evidence)",
 "Continent is one of (North America, South America)",
 "TaxonKey is Orthemis ferruginea"
 ]
}

 The dataset includes 19214 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004689-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17127682
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250915u Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250915u Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.17127681
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250915u Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250915u Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.16040131
title: Impact of System Size on the Biophysical Properties of Multi-Component Lipid Bilayers: A Systematic Study Using Molecular Dynamics Simulations

description: Topology, parameter, coordinate, and trajectory files for symmetric lipid membrane patches with 50, 100, 150, 200, 250, and 300 lipids per leaflet used in an all-atom molecular dynamics study. The trajectories have been stripped of water molecules.
DOI: 10.5281/zenodo.17127529
title: Impact of System Size on the Biophysical Properties of Multi-Component Lipid Bilayers: A Systematic Study Using Molecular Dynamics Simulations

description: Topology, parameter, coordinate, and trajectory files for symmetric lipid membrane patches with 50, 100, 150, 200, 250, and 300 lipids per leaflet used in an all-atom molecular dynamics study. The trajectories have been stripped of water molecules.
DOI: 10.15468/dl.tqt4w9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polyodon spathula",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004692-250914085247600/datasets/export for details.
DOI: 10.15468/dl.shc8ye
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polyodon spathula",
 "Country is Greece",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004694-250914085247600/datasets/export for details.
DOI: 10.15468/dl.u3ydtj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polyodon spathula",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004693-250914085247600/datasets/export for details.
DOI: 10.7910/dvn/mqorje
title: Is Ethnic Violence Self-Perpetuating? Quasi-Experimental Evidence from Hindu-Muslim Riots in India

description: Ethnic riots tend to occur in the same places over time. We study whether this serial correlation exists because ethnic riots tend to be self-perpetuating or because both past and future riots are caused by the same underlying factors that persist through time. To answer this question, we leverage the fact that the timing of major Hindu festivals in India is exogenously determined by the lunar calendar and that when a major Hindu festival happens to fall on a Friday—the principal day Muslims attend mosque—the likelihood of a Hindu-Muslim riot increases significantly. Using this instrument, we find that the well-documented serial correlation in Hindu-Muslim riots disappears entirely (T=1950-2006). This suggests that the observed recurrence of riots is not driven by the riots themselves, but by underlying conditions that remain unaddressed. Once these confounding factors are accounted for, we find no 
"additional" effect of past riots on future riots.
DOI: 10.15468/dl.tfvrv2
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is El Salvador",
 "OccurrenceStatus is Present",
 "TaxonKey is Lampropeltis triangulum"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004695-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3rkm2d
title: Occurrence Download

description: A dataset containing 3205 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alocasia macrorrhizos"
 ]
}

 The dataset includes 3205 records from 215 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004696-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvqscg
title: Occurrence Download

description: A dataset containing 3594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Occurrence evidence)",
 "Continent is one of (North America, South America)",
 "TaxonKey is Paltothemis lineatipes"
 ]
}

 The dataset includes 3594 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004697-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ywdq2
title: Occurrence Download

description: A dataset containing 9524 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Phylogenomics and the rise of the angiosperms"
 ]
}

 The dataset includes 9524 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004698-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqyygf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polyodon spathula",
 "Country is Romania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004700-250914085247600/datasets/export for details.
DOI: 10.15468/dl.gh7qrk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polyodon spathula",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004699-250914085247600/datasets/export for details.
DOI: 10.15468/dl.zm2ghy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polyodon spathula",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004701-250914085247600/datasets/export for details.
DOI: 10.5281/zenodo.17033776
title: Abiotic controls on warm-water carbonates through geological times

description: Evaluation of global carbonate distribution and accumulation over the past 265 Myr accounting for changes in paleogeography, plate tectonics, and paleo-climatic conditions.
description: The approach relies on (1) paleo-environmental ocean variables from the HadCM3 (BRIDGE) coupled atmosphere-ocean-vegetation Hadley Centre climate models, (2) the observed modern photozoan-T factory defined after Michel et al., (3) the updated continental margins and paleocoastlines dataset available on Zenodo based on the paleogeography maps from the PALEOMAP project, and (4) sediment flux derived from global scale landscape evolution model for the Phanerozoic HydroShare. In addition, sensitivity tests are making use of the fossil records from the Paleo Reefs PARED database.

Data Acquisition

Paleo-environmental oceanic variables from the HadCM3 climate models  for both smoothed and Foster et al. CO2 curves are available from the Bristol Research Initiative for the Dynamic Global Environment (BRIDGE) website: (BRIDGE) https://www.paleo.bristol.ac.uk}{https://www.paleo.bristol.ac.uk.

The observed modern photozoan-T factory is available from Laugié et al. 2019. The updated continental margins and paleo-coastlines dataset from Kocsis et al., 2021 are compiled in a Zenodo repository available from https://doi.org/10.5281/zenodo.3903163.

Finally, sediment and water flux derived from the global scale landscape evolution model Salles et al. 2023 are available for the Phanerozoic from HydroShare.

Scientific software

The scientific software used in this study, Biomod2, is written in R language and is available from CRAN from the following url: https://cran.r-project.org/web/packages/biomod2/index.html and the software documentation can be found in https://biomodhub.github.io/biomod2. Examples of R and Python scripts, as well as Jupyter Notebooks used in our pre- and post-processing workflows, are available from the following GitHub link: https://github.com/Geodels/paleoReef.
description: All provided data are available as geotiff files.
The dataset contains the environmental variables for each time slice (approximately every 5 Myr) and for 2 CO2 scenarios (Foster & Smooth curves - Foster_ensemble.zip and Smooth_ensemble.zip):

currents
ocean stream
SSS max
SSS min
SST max
SST min
sediment influx
Then the results from the species distribution model (BIOMOD2) ensemble models are provided for each CO2 scenarios and contains four variables (FosterCO2.zip and Smooth_CO2.zip): 

median of probabilities (median),
mean of probabilities (mean),
weighted mean of probabilities according to single evaluation scores (wmean) and
committee averaging score (ca):
Additional information are provided in the companion GitHub repository.
DOI: 10.15468/dl.v95rer
title: Occurrence Download

description: A dataset containing 1208 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Reptilia collection of the Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Portugal"
 ]
}

 The dataset includes 1208 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004702-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.upp55w
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Cyrtodactylus tahuna sp. nov., a new bent-toed gecko (Reptilia: Squamata: Gekkonidae) from Sangihe Island, North Sulawesi, Indonesia"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004703-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjna7w
title: Occurrence Download

description: A dataset containing 259297 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is WELT Herbarium at Museum of New Zealand Te Papa Tongarewa"
 ]
}

 The dataset includes 259297 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004691-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xkz87
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polyodon spathula",
 "Country is Serbia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004705-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4jeuz3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polyodon spathula",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004706-250914085247600/datasets/export for details.
DOI: 10.5281/zenodo.17127715
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250915u Initial

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250915u Initial. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.17127716
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250915u Initial

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250915u Initial. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.15468/dl.7wande
title: Occurrence Download

description: A dataset containing 16057 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Occurrence evidence)",
 "Continent is one of (North America, South America)",
 "TaxonKey is Pantala flavescens"
 ]
}

 The dataset includes 16057 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004704-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qavq42
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polyodon spathula",
 "Country is Slovenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004707-250914085247600/datasets/export for details.
DOI: 10.15468/dl.puavj9
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is A new species of the genus Rhynchocalamus Günther, 1864 (Reptilia: Squamata: Colubridae) from Ilam province in western Iran"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004708-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17127684
title: Global data on tail abnormalities in geckos and environmental metrics

description: This database comprises 136,069 gecko records classified for the presence or absence of tail abnormalities, spanning 122 genera and sourced from iNaturalist. Each entry integrates geographic, temporal, taxonomic, annual climate variables (precipitation, thermal amplitude, solar radiation), and PM2.5 concentrations, matched to the nearest pollution monitoring site. Environmental data were extracted from WorldClim 2.1 and a global air pollution dataset, enabling investigation of how broad-scale environmental gradients and air quality influence the occurrence of caudal abnormalities in geckos.
DOI: 10.15468/dl.ex6hnx
title: Occurrence Download

description: A dataset containing 4093 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Occurrence evidence)",
 "TaxonKey is Perithemis intensa"
 ]
}

 The dataset includes 4093 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004710-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e237342v5
title: Virginia election data repository

description: <br>
.An exhaustive collection of Virginia election dataset-To map and publish as many partisan Virginia statewide, federal, congressional and state legislative elections as possible, which had precinct level results on the department of elections website. This was so that they could be analyzed by researchers in the field of political science. A lesser but important goal was data preservation. Prior to this project, DRA only had election data for Virginia for 2008, 2012, 2016 and onwards. There was no data for lower level offices that occurred prior to 2017. This project sought to fill in these gaps. To be included, the data had to have been available by precinct on the Virginia Department of Elections website<br>