cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fbfrwc
title: Occurrence Download

description: A dataset containing 688 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Insect Species Occurrence Data from Multiple Projects Worldwide with Focus on Bees and Wasps in North America",
 "Geometry POLYGON((-71.01769 20.44545,-73.51537 20.20956,-74.2508 19.65452,-74.73646 18.66933,-74.61158 17.9339,-72.44692 17.17072,-70.71242 17.2401,-68.39512 17.80901,-68.13148 18.87747,-68.54776 19.65452,-70.22676 20.26507,-71.01769 20.44545))"
 ]
}

 The dataset includes 688 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053887-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jh9kv9
title: Occurrence Download

description: A dataset containing 1902 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Berberis amurensis Rupr."
 ]
}

 The dataset includes 1902 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053886-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cjw564
title: Occurrence Download

description: A dataset containing 1090 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phaeoptyx pigmentaria (Poey, 1860)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 1090 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053888-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.py9326
title: Occurrence Download

description: A dataset containing 3368 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lexias pardalis"
 ]
}

 The dataset includes 3368 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053889-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f7ttqb
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phaeoptyx xenus (Böhlke & Randall, 1968)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 216 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053890-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjc6m9
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachyscome angustifolia A.Cunn. ex DC."
 ]
}

 The dataset includes 16 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053891-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6uf3t6
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phanerodon atripes (Jordan & Gilbert, 1880)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 43 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053892-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10088591
title: Rainfall data in Seoul, Korea during 1778-1907

description: Precipitation records from the 18th century were extracted from the digitization of ancient national documents. We provide improved data that removes errors and omissions from past research data.
DOI: 10.5281/zenodo.10622610
title: Rainfall data in Seoul, Korea during 1778-1907

description: Precipitation records from the 18th century were extracted from the digitization of ancient national documents. We provide improved data that removes errors and omissions from past research data.
DOI: 10.5281/zenodo.10622822
title: Rainfall data in Seoul, Korea during 1778-1907

description: Precipitation records from the 18th century were extracted from the digitization of ancient national documents. We provide improved data that removes errors and omissions from past research data.
DOI: 10.5281/zenodo.11076768
title: Precipitation data in Seoul, Korea during 1778-1907

description: Precipitation records from the 18th century were extracted from the digitization of ancient national documents. We provide improved data that removes errors and omissions from past research data.
DOI: 10.5281/zenodo.14586369
title: Precipitation data in Seoul, Korea during 1778-1907

description: Precipitation records from the 18th century were extracted from the digitization of ancient national documents. We provide improved data that removes errors and omissions from past research data.
DOI: 10.5281/zenodo.14586403
title: Precipitation data in Seoul, Korea during 1778-1907

description: Precipitation records from the 18th century were extracted from the digitization of ancient national documents. We provide improved data that removes errors and omissions from past research data



Corrected for wrong date 1786-1-1, 1786-1-2, 1786-1-3, 1874-1-1
DOI: 10.5281/zenodo.7107149
title: Precipitation data in Seoul, Korea during 1778-1907

description: Precipitation records from the 18th century were extracted from the digitization of ancient national documents. We provide improved data that removes errors and omissions from past research data



Corrected for wrong date 1786-1-1, 1786-1-2, 1786-1-3, 1874-1-1
DOI: 10.5281/zenodo.7107150
title: Quality assurance of Korean historical precipitation in Seoul during 1778-1849

description: Precipitation records from the 18th century were extracted from the digitization of ancient national documents. We provide improved data that removes errors and omissions from past research data.
DOI: 10.5281/zenodo.7498402
title: Quality assurance of Korean historical precipitation in Seoul during 1778-1849

description: Precipitation records from the 18th century were extracted from the digitization of ancient national documents. We provide improved data that removes errors and omissions from past research data.
DOI: 10.5281/zenodo.7500189
title: Quality assurance of Korean historical precipitation in Seoul during 1778-1849

description: Precipitation records from the 18th century were extracted from the digitization of ancient national documents. We provide improved data that removes errors and omissions from past research data.
DOI: 10.15468/dl.xazjya
title: Occurrence Download

description: A dataset containing 728 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phanerodon furcatus Girard, 1854",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 728 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053893-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28106909
title: ss&rd_004_rep

description: Replicate of ss&rd_004
DOI: 10.6084/m9.figshare.28106906
title: IVT_neg_004

description: For the generation of in vitro transcribed (IVT) RNA, the poly(A)-tailed RNA underwent reverse transcription to synthesize double-stranded cDNA, which was then used for in vitro transcription. Primers used in reverse transcription referred to previously published protocols (17, 50). The following oligonucleotides were purchased from the BGI Genomics, SZ, PRC: template switching oligo (TSO) T7 primer, 5′-ACTCTAATACGACTCACTATAGGGAGAGGGCrGrGrG-3′, where r indicates ribonucleotide bases; T7 extension primer, 5′-GCTCTAATACGACTCACTATAGG-3′. For the reverse transcription conditions, we referred to a previously published literature (51). In total, 300 ng RNA in 6 μl nuclease-free water was first annealed with 1 μl oligo(dT)23VN primer (10 μM, New England Biolabs) and 1 μl dNTP (10 mM, New England Biolabs) for 3 min at 72°C, 10 min at 4°C, 1 min at 25°C with the lid temperature set at ≥85°C and then held at 4°C. The reverse transcription (RT) mix was assembled containing 3 μl nuclease-free water, 4.4 μl 5xRT Buffer, 1 μl RNaseOut (Invitrogen), 1 μl TSO T7 primer (75 μM), and 1 μl Maxima H Minus Reverse Transcriptase (Thermo Scientific). After adding the RT mix to the annealed RNA, the reaction mixture was incubated following the SSIV RT protocol (51). The RNA template was subsequently hydrolyzed by the Thermostable RNase H (New England Biolabs) according to the manufacturer's instructions. The template-switching cDNA product was purified using the VAHTS RNA Clean Beads. The second-strand cDNA synthesis reaction mixture was assembled on ice consisting of 20 μl template-switching cDNA, 25 μl Q5 Hot Start High Fidelity Master Mix (New England Biolabs), 3.75 μl T7 extension primer (50 μM), and 1.25 μl nuclease-free water. Following the initial denaturation at 95°C for 1 min and 57°C for 30 sec for annealing, the reaction mixture was incubated at 65°C for 10 min. The resulting double-strand DNA (dsDNA) was purified using 1 volume of AMPure XP beads (Beckman Coulter). The in vitro transcription step was performed using the MEGAscript Kit (Ambion, MA, USA) at 37°C for 4 h. IVT RNA prepared in this article refers specifically to modification-free RNA, so the reaction mixture was composed of 2 μl each of NTPs, 2 μl Reaction Buffer, 120 ng ds-cDNA template in 8 μl nuclease-free water, and 2 μl Enzyme Mix.
DOI: 10.4121/e0944cc4-115c-4f85-b52e-8fbc60001f9e
title: The Raw datasets of the study A novel two-component system MprA/B (MprA/B1) was involved in regulation of metabolism, antibiotics resistance and virulence in Nocardia seriolae

description: <em>Nocardia seriolae </em>is one of the most important bacterial pathogens in cultured fish, causing serious necrotic granulomas in tissues. As a Gram-positive bacterium belonging to the order Actinomycetales, the pathogenic mechanism of <em>N. seriolae </em>is complex and not well defined. Two-component systems (TCS) function as signal transducers in prokaryotes that respond to different environmental stimuli. In this study, a novel two-component system gene, <em>mprA/B</em> homolog (<em>mprA/B</em>1), was identified in <em>N. seriolae</em> and a double gene-deficient mutant was generated. The Δ<em>mprA/B</em>1 strain exhibited faster growth and a more turbid bacterial suspension in trypticase soy broth (TSB). Transmission electron microscopy revealed an extra irregular polysaccharide layer outside the cell wall in the Δ<em>mprA/B</em>1 strain. Moreover, the Δ<em>mprA/B</em>1 strain showed a significantly increased sensitivity to macrolides and rifampicin. In a cell line, both strains were able to invade and survive intracellularly and induce cell apoptosis, but the Δ<em>mprA/B</em>1 strain showed lower cell invasion and intracellular survival rates. In largemouth bass, the Δ<em>mprA/B</em>1 strain showed significantly less tissue bacterial load and attenuated virulence. RNA sequencing identified 492 upregulated and 851 downregulated genes in the Δ<em>mprA/B</em>1 strain, and the gene ontology (GO) and kyoto encyclopedia of genes and genomes (KEGG) pathway enrichment showed that many upregulated genes were involved in sugar and amino acid metabolic processes, and many downregulated genes were involved in drug efflux pump and virulence factor. These findings provide functional insights into the role of MprA/B in <em>N. seriolae</em>.<br>
DOI: 10.4121/e0944cc4-115c-4f85-b52e-8fbc60001f9e.v1
title: The Raw datasets of the study A novel two-component system MprA/B (MprA/B1) was involved in regulation of metabolism, antibiotics resistance and virulence in Nocardia seriolae

description: <em>Nocardia seriolae </em>is one of the most important bacterial pathogens in cultured fish, causing serious necrotic granulomas in tissues. As a Gram-positive bacterium belonging to the order Actinomycetales, the pathogenic mechanism of <em>N. seriolae </em>is complex and not well defined. Two-component systems (TCS) function as signal transducers in prokaryotes that respond to different environmental stimuli. In this study, a novel two-component system gene, <em>mprA/B</em> homolog (<em>mprA/B</em>1), was identified in <em>N. seriolae</em> and a double gene-deficient mutant was generated. The Δ<em>mprA/B</em>1 strain exhibited faster growth and a more turbid bacterial suspension in trypticase soy broth (TSB). Transmission electron microscopy revealed an extra irregular polysaccharide layer outside the cell wall in the Δ<em>mprA/B</em>1 strain. Moreover, the Δ<em>mprA/B</em>1 strain showed a significantly increased sensitivity to macrolides and rifampicin. In a cell line, both strains were able to invade and survive intracellularly and induce cell apoptosis, but the Δ<em>mprA/B</em>1 strain showed lower cell invasion and intracellular survival rates. In largemouth bass, the Δ<em>mprA/B</em>1 strain showed significantly less tissue bacterial load and attenuated virulence. RNA sequencing identified 492 upregulated and 851 downregulated genes in the Δ<em>mprA/B</em>1 strain, and the gene ontology (GO) and kyoto encyclopedia of genes and genomes (KEGG) pathway enrichment showed that many upregulated genes were involved in sugar and amino acid metabolic processes, and many downregulated genes were involved in drug efflux pump and virulence factor. These findings provide functional insights into the role of MprA/B in <em>N. seriolae</em>.<br>
DOI: 10.15468/dl.qdevhk
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phenacoscorpius nebris Eschmeyer, 1965",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 23 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053895-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axvvn7
title: Occurrence Download

description: A dataset containing 36622 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mimosa pigra L."
 ]
}

 The dataset includes 36622 records from 382 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053894-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1193604.10fu
title: SH1193604.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1193607.10fu
title: SH1193607.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1193610.10fu
title: SH1193610.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1193612.10fu
title: SH1193612.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1193615.10fu
title: SH1193615.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1193617.10fu
title: SH1193617.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1193618.10fu
title: SH1193618.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.