cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10342838
title: São Joaquim e a Virgem (Montemor-o-Novo)

description: This is a religious statue from the 17th century, of the Convento da Saudação, of Saint Joachim and the infant Virgin. The statue is made of painted and gilded wood. This is a piece of the collection of the museum of São Domingos, in Montemor-o-Novo.

Photos from Canon 5D Mk IV (35mm lens). Completely processed (aligned, scaled, modeled, cleaned, simplified, unwrapped, textured, meshed) in Reality Capture.

Source: Objaverse 1.0 / Sketchfab
DOI: 10.6084/m9.figshare.11635029.v2
title: Additional file 2 of Maternal blood folate status during early pregnancy and occurrence of autism spectrum disorder in offspring: a study of 62 serum biomarkers

description: Additional file 2: Figure S2. Associations between sampling year and studied biomarkers. The smooth line was fitted with loess. a All participants. b Case group. c Control group.
DOI: 10.6084/m9.figshare.11635029.v1
title: MOESM2 of Maternal blood folate status during early pregnancy and occurrence of autism spectrum disorder in offspring: a study of 62 serum biomarkers

description: Additional file 2: Figure S2. Associations between sampling year and studied biomarkers. The smooth line was fitted with loess. a All participants. b Case group. c Control group.
DOI: 10.6084/m9.figshare.11635023
title: Additional file 1 of Maternal blood folate status during early pregnancy and occurrence of autism spectrum disorder in offspring: a study of 62 serum biomarkers

description: Additional file 1: Figure S1. Seasonal variations of studied biomarkers. The smooth line was fitted with locally weighted scatterplot smoothing (loess). a All participants. b Case group. c Control group.
DOI: 10.6084/m9.figshare.11635023.v2
title: Additional file 1 of Maternal blood folate status during early pregnancy and occurrence of autism spectrum disorder in offspring: a study of 62 serum biomarkers

description: Additional file 1: Figure S1. Seasonal variations of studied biomarkers. The smooth line was fitted with locally weighted scatterplot smoothing (loess). a All participants. b Case group. c Control group.
DOI: 10.6084/m9.figshare.11635023.v1
title: MOESM1 of Maternal blood folate status during early pregnancy and occurrence of autism spectrum disorder in offspring: a study of 62 serum biomarkers

description: Additional file 1: Figure S1. Seasonal variations of studied biomarkers. The smooth line was fitted with locally weighted scatterplot smoothing (loess). a All participants. b Case group. c Control group.
DOI: 10.6084/m9.figshare.11635014
title: MOESM9 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 9: Table S5. Differentially abundant OTUs before and after weaning in the W28 group.
DOI: 10.6084/m9.figshare.11635008
title: MOESM8 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 8: Table S4. Differentially abundant OTUs before and after weaning in the W21 group.
DOI: 10.6084/m9.figshare.11635014.v1
title: MOESM9 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 9: Table S5. Differentially abundant OTUs before and after weaning in the W28 group.
DOI: 10.6084/m9.figshare.11635008.v1
title: MOESM8 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 8: Table S4. Differentially abundant OTUs before and after weaning in the W21 group.
DOI: 10.6084/m9.figshare.11635002
title: MOESM7 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 7: Table S3. Differentially abundant OTUs before and after weaning in the W14 group.
DOI: 10.6084/m9.figshare.11635002.v1
title: MOESM7 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 7: Table S3. Differentially abundant OTUs before and after weaning in the W14 group.
DOI: 10.6084/m9.figshare.11634996
title: MOESM2 of Transcriptome of pleuropodia from locust embryos supports that these organs produce enzymes enabling the larva to hatch

description: Additional file 2: Table S1. Embryonic transcriptome of S. gregaria: numbers of sequenced reads and assembled transcripts. Table S2. RNA-seq expression analysis: numbers of sequenced and mapped reads. Table S3. Number of differentially expressed genes at selected levels of stringency. Table S4. Differential expression of genes, whose expression dynamics in the early stages of pleuropodia development is known. Table S5. Comparison between differential expression of selected genes obtained by RNA-seq and real-time RT-PCR. Table S6. GOs enriched in the downregulated DEGs from the highly secreting pleuropodia (joined sample 10, 11 and 12 days). Table S7. GOs enriched in the upregulated DEGs from the highly secreting pleuropodia (joined sample 10, 11 and 12 days). Table S8. GOs enriched in the downregulated DEGs from each developmental stage . Table S9. GOs enriched in the upregulated DEGs from each developmental stage. Table S10. Genes for core transporters expressed in the pleuropodia. Table S11. S. gregaria genes for proteins with GO “proteolysis” that were upregulated in the highly secreting pleuropodia. Table S12. Differential gene expression of S. gregaria homologs (or close relatives) of known genes for MF proteases in the highly secreting pleuropodia. Table S13. Immunity-related proteins expressed in the highly secreting pleuropodia. Table S14. Genes for lysozymes identified in the S. gregaria embryonic transcriptome. Table S15. Genes for ecdysone biosynthesis enzymes identified in the S. gregaria embryonic transcriptome. Table S16. RNA-seq differential gene expression of S. gregaria ecdysone biosynthesis enzymes in the pleuropodia at diverse stages. Table S17. S. gregaria genes with GO terms “hormone biosynthetic process” upregulated in the highly secreting pleuropodia. Table S18. Sequences of primers.
DOI: 10.6084/m9.figshare.11634996.v1
title: MOESM2 of Transcriptome of pleuropodia from locust embryos supports that these organs produce enzymes enabling the larva to hatch

description: Additional file 2: Table S1. Embryonic transcriptome of S. gregaria: numbers of sequenced reads and assembled transcripts. Table S2. RNA-seq expression analysis: numbers of sequenced and mapped reads. Table S3. Number of differentially expressed genes at selected levels of stringency. Table S4. Differential expression of genes, whose expression dynamics in the early stages of pleuropodia development is known. Table S5. Comparison between differential expression of selected genes obtained by RNA-seq and real-time RT-PCR. Table S6. GOs enriched in the downregulated DEGs from the highly secreting pleuropodia (joined sample 10, 11 and 12 days). Table S7. GOs enriched in the upregulated DEGs from the highly secreting pleuropodia (joined sample 10, 11 and 12 days). Table S8. GOs enriched in the downregulated DEGs from each developmental stage . Table S9. GOs enriched in the upregulated DEGs from each developmental stage. Table S10. Genes for core transporters expressed in the pleuropodia. Table S11. S. gregaria genes for proteins with GO “proteolysis” that were upregulated in the highly secreting pleuropodia. Table S12. Differential gene expression of S. gregaria homologs (or close relatives) of known genes for MF proteases in the highly secreting pleuropodia. Table S13. Immunity-related proteins expressed in the highly secreting pleuropodia. Table S14. Genes for lysozymes identified in the S. gregaria embryonic transcriptome. Table S15. Genes for ecdysone biosynthesis enzymes identified in the S. gregaria embryonic transcriptome. Table S16. RNA-seq differential gene expression of S. gregaria ecdysone biosynthesis enzymes in the pleuropodia at diverse stages. Table S17. S. gregaria genes with GO terms “hormone biosynthetic process” upregulated in the highly secreting pleuropodia. Table S18. Sequences of primers.
DOI: 10.6084/m9.figshare.11634960
title: MOESM19 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 19: Table S15. Differentially abundant OTUs at 60 days of age for the weaning groups.
DOI: 10.6084/m9.figshare.11634957
title: MOESM18 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 18: Table S14. Differentially abundant genera after weaning for the weaning groups.
DOI: 10.6084/m9.figshare.11634960.v1
title: MOESM19 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 19: Table S15. Differentially abundant OTUs at 60 days of age for the weaning groups.
DOI: 10.6084/m9.figshare.11634951
title: MOESM9 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 9: Table S9. Scaled Kleinberg’s hub scores per gene for each WGCNA module significantly correlated with phenotypic traits in the AL-T0/AL-T1 and AL-T0/AL-T2 contrasts.
DOI: 10.6084/m9.figshare.11634954
title: MOESM17 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 17: Table S13. Differentially abundant OTUs after weaning for the weaning groups.
DOI: 10.6084/m9.figshare.11634957.v1
title: MOESM18 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 18: Table S14. Differentially abundant genera after weaning for the weaning groups.
DOI: 10.6084/m9.figshare.11634954.v1
title: MOESM17 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 17: Table S13. Differentially abundant OTUs after weaning for the weaning groups.
DOI: 10.6084/m9.figshare.11634945
title: MOESM8 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 8: Table S8. Estimated Hub scores (K) values for genes differentially expressed in the AL-T0/AL-T1 and AL-T0/AL-T2 contrasts.
DOI: 10.6084/m9.figshare.11634948
title: MOESM16 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 16: Table S12. Differentially abundant genera before weaning for the weaning groups.
DOI: 10.6084/m9.figshare.11634951.v1
title: MOESM9 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 9: Table S9. Scaled Kleinberg’s hub scores per gene for each WGCNA module significantly correlated with phenotypic traits in the AL-T0/AL-T1 and AL-T0/AL-T2 contrasts.
DOI: 10.6084/m9.figshare.11634945.v1
title: MOESM8 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 8: Table S8. Estimated Hub scores (K) values for genes differentially expressed in the AL-T0/AL-T1 and AL-T0/AL-T2 contrasts.
DOI: 10.6084/m9.figshare.11634942
title: MOESM15 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 15: Table S11. Differentially abundant phyla before weaning for the weaning groups.
DOI: 10.6084/m9.figshare.11634948.v1
title: MOESM16 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 16: Table S12. Differentially abundant genera before weaning for the weaning groups.
DOI: 10.6084/m9.figshare.11634939
title: MOESM7 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 7: Table S7. mRNA-to-mRNA significant interactions detected with the PCIT algorithm in the AL-T0/AL-T1 and AL-T0/AL-T2 contrasts.
DOI: 10.6084/m9.figshare.11634936
title: MOESM14 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 14: Table S10. Differentially abundant OTUs before weaning for the weaning groups.
DOI: 10.6084/m9.figshare.11634939.v1
title: MOESM7 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 7: Table S7. mRNA-to-mRNA significant interactions detected with the PCIT algorithm in the AL-T0/AL-T1 and AL-T0/AL-T2 contrasts.
DOI: 10.6084/m9.figshare.11634942.v1
title: MOESM15 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 15: Table S11. Differentially abundant phyla before weaning for the weaning groups.
DOI: 10.6084/m9.figshare.11634933
title: MOESM6 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 6: Table S6. miRNA-to-mRNA significant interactions detected with the PCIT algorithm in the AL-T0/AL-T1 and AL-T0/AL-T2 contrasts.
DOI: 10.6084/m9.figshare.11634936.v1
title: MOESM14 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 14: Table S10. Differentially abundant OTUs before weaning for the weaning groups.
DOI: 10.6084/m9.figshare.11634927
title: MOESM5 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 5: Table S5. Pathway Enrichment and GO Enrichment analyses in the AL-T0/AL-T2 contrast.
DOI: 10.6084/m9.figshare.11634930
title: MOESM13 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 13: Table S9. Differences in alpha diversity, beta diversity, and richness among sampling points. General differences were determined using ANOVAs, and Tukey’s HSD tests were employed for the post-hoc comparisons. Significant p-values are in bold.
DOI: 10.6084/m9.figshare.11634933.v1
title: MOESM6 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 6: Table S6. miRNA-to-mRNA significant interactions detected with the PCIT algorithm in the AL-T0/AL-T1 and AL-T0/AL-T2 contrasts.
DOI: 10.6084/m9.figshare.11634927.v1
title: MOESM5 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 5: Table S5. Pathway Enrichment and GO Enrichment analyses in the AL-T0/AL-T2 contrast.
DOI: 10.6084/m9.figshare.11634930.v1
title: MOESM13 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 13: Table S9. Differences in alpha diversity, beta diversity, and richness among sampling points. General differences were determined using ANOVAs, and Tukey’s HSD tests were employed for the post-hoc comparisons. Significant p-values are in bold.
DOI: 10.6084/m9.figshare.11634921
title: MOESM4 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 4: Table S4. Pathway Enrichment and GO Enrichment analyses in the AL-T0/AL-T1 contrast.
DOI: 10.6084/m9.figshare.11634924
title: MOESM12 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 12: Table S8. Differences in normalized F. prausnitzii abundances among sampling points for the four weaning groups. General differences were determined using ANOVAs, and Tukey’s HSD tests were employed to compare F. prausnitzii abundances between weaning groups for each sampling point: before weaning, after weaning, and at 60 days of age. Significant p-values are in bold.
DOI: 10.6084/m9.figshare.11634921.v1
title: MOESM4 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 4: Table S4. Pathway Enrichment and GO Enrichment analyses in the AL-T0/AL-T1 contrast.
DOI: 10.6084/m9.figshare.11634918
title: MOESM11 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 11: Table S7. Differences in normalized F. prausnitzii abundances among weaning groups across all sampling points. The existence of a general difference among the groups was determined using an ANOVA, and Tukey’s HSD tests were employed to carry out post-hoc comparisons between all the groups at all the sampling points. Significant p-values are in bold.
DOI: 10.6084/m9.figshare.11634924.v1
title: MOESM12 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 12: Table S8. Differences in normalized F. prausnitzii abundances among sampling points for the four weaning groups. General differences were determined using ANOVAs, and Tukey’s HSD tests were employed to compare F. prausnitzii abundances between weaning groups for each sampling point: before weaning, after weaning, and at 60 days of age. Significant p-values are in bold.
DOI: 10.6084/m9.figshare.11634915
title: MOESM3 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 3: Table S3. Differentially dispersed mRNAs in the AL-T0/AL-T1 and AL-T0/AL-T2 contrasts.
DOI: 10.6084/m9.figshare.11634915.v1
title: MOESM3 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 3: Table S3. Differentially dispersed mRNAs in the AL-T0/AL-T1 and AL-T0/AL-T2 contrasts.
DOI: 10.6084/m9.figshare.11634918.v1
title: MOESM11 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 11: Table S7. Differences in normalized F. prausnitzii abundances among weaning groups across all sampling points. The existence of a general difference among the groups was determined using an ANOVA, and Tukey’s HSD tests were employed to carry out post-hoc comparisons between all the groups at all the sampling points. Significant p-values are in bold.
DOI: 10.6084/m9.figshare.11634909
title: MOESM10 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 10: Table S6. Differentially abundant OTUs before and after weaning in the W42 group.
DOI: 10.6084/m9.figshare.11634906
title: MOESM2 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 2: Table S2. Differentially expressed mRNAs in the AL-T0/AL-T1 and AL-T0/AL-T2 contrasts.
DOI: 10.6084/m9.figshare.11634909.v1
title: MOESM10 of Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

description: Additional file 10: Table S6. Differentially abundant OTUs before and after weaning in the W42 group.
DOI: 10.6084/m9.figshare.11634903
title: MOESM1 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 1: Table S1. Meat quality and gluteus medius fatty acids composition traits recorded in AL-T0, AL-T1 and AL-T2 Duroc gilts.
DOI: 10.6084/m9.figshare.11634906.v1
title: MOESM2 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 2: Table S2. Differentially expressed mRNAs in the AL-T0/AL-T1 and AL-T0/AL-T2 contrasts.
DOI: 10.6084/m9.figshare.11634903.v1
title: MOESM1 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 1: Table S1. Meat quality and gluteus medius fatty acids composition traits recorded in AL-T0, AL-T1 and AL-T2 Duroc gilts.
DOI: 10.6084/m9.figshare.11634894
title: MOESM14 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 14: Table S14. Gene co-expression modules significantly associated with meat quality and fatty acids composition traits according to the WGCNA algorithm (AL-T0/AL-T2 contrast).
DOI: 10.6084/m9.figshare.11634891
title: MOESM4 of Comparative transcriptomics reveals candidate carotenoid color genes in an East African cichlid fish

description: Additional file 4. Supplementary information on the qPCR experiment: Candidate reference genes selected based on RNA-Seq data; qPCR primers for candidate reference and target genes; Cq and RQ values of target genes; paired t-tests for dorsoventral expression level differences.
DOI: 10.6084/m9.figshare.11634891.v1
title: MOESM4 of Comparative transcriptomics reveals candidate carotenoid color genes in an East African cichlid fish

description: Additional file 4. Supplementary information on the qPCR experiment: Candidate reference genes selected based on RNA-Seq data; qPCR primers for candidate reference and target genes; Cq and RQ values of target genes; paired t-tests for dorsoventral expression level differences.
DOI: 10.6084/m9.figshare.11634894.v1
title: MOESM14 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 14: Table S14. Gene co-expression modules significantly associated with meat quality and fatty acids composition traits according to the WGCNA algorithm (AL-T0/AL-T2 contrast).
DOI: 10.6084/m9.figshare.11634885
title: MOESM13 of Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

description: Additional file 13: Table S13. Gene co-expression modules significantly associated with meat quality and fatty acids composition traits according to the WGCNA algorithm (AL-T0/AL-T1 contrast).