cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7486325
title: Dataset related to article "In-depth genetic and molecular characterization of Diaphanous Related Formin 2 (DIAPH2) and its role in the inner ear"

description: This record contains data (Table S1 to S4, Figure S1 to S12, File S1) related to article “In-depth genetic and molecular characterization of Diaphanous Related Formin 2 (<em>DIAPH2</em>) and its role in the inner ear” . Specifically, the record contains the following supplementary information to the article: Table S1. Coding sequence coverage of known autosomal recessive and X-linked NSHL-causing genes in exome data. Table S2. Prioritized variants shared between affected siblings III1 and III3. Table S3. CNVs shared between affected siblings III1 and III3. Table S4. Primers used for genetic screening of candidate genes/variants. Figure S1. Analysis of auditory brainstem evoked potentials in proband III3. Figure S2. Expression of mouse <em>Diaph2 </em>mRNA in P4 organ of Corti by RT-PCR. Figure S3. Diaph2 expression in E14.5 and E16.5 wild-type mouse cochlea. Figure S4. Evaluation of Diaph2 expression in whole-mount mouse cochleas. Figure S5. Diaph2 expression in P7 and P14 wild-type mouse cochlea. Figure S6. <em>In-silico</em> analysis of the impact of c.868A&gt;G variant on <em>DIAPH2</em> pre-mRNA splicing. Figure S7. <em>In-vitro</em> analysis of the impact of c.868A&gt;G variant on <em>DIAPH2</em> pre-mRNA splicing. Figure S8. <em>In-vitro</em> characterization of the effect of the c.868A&gt;G variation on splicing using a <em>DIAPH2</em>minigene spanning exons 6 to 9. Figure S9. Analysis of <em>DIAPH2</em> exon 8 splicing in blood from NSHL3 family subjects. Figure S10. <em>In-vivo</em> analysis of <em>Diaph2</em> exon 8 splicing in the mouse cochlea. Figure S11. Pathogenicity prediction of the p.I290V missense variant with 8 commonly used software. Figure S12. DIAPH2 immunolocalization studies in basal conditions. File S1. Supplementary Methods
DOI: 10.6084/m9.figshare.21781916
title: Supplement to: "Releasing global forests from management : how much more carbon could be stored?"

description: Here we provide the data that was produced for the paper "Releasing global forests from management : how much more carbon could be stored?". The scripts that produced these results can be found through the following link: https://github.com/jasperroebroek/biomass_carrying_capacity. Note that the file expected_biomass.tif corresponds to biomass carrying capacity described in the paper.
DOI: 10.6084/m9.figshare.21781904
title: TALLER DE TESIS - TIF & R.Social.pdf

description: The investigations carried out investigations in the agronomy faculty of the National University of San Agustín de Arequipa, Perú. There was no classification of the sub-lines of research in the agronomy school, from 2013 to 2022.
DOI: 10.6084/m9.figshare.21781904.v1
title: TALLER DE TESIS - TIF & R.Social.pdf

description: The investigations carried out investigations in the agronomy faculty of the National University of San Agustín de Arequipa, Perú. There was no classification of the sub-lines of research in the agronomy school, from 2013 to 2022.
DOI: 10.34740/kaggle/dsv/4777557
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.6084/m9.figshare.21641300.v6
title: Young Hoon Soong & Chung, E-S. Monthly potential evapotranspiration dataset based on CMIP6 GCM. Figshare,

description: Regridding Global CMIP6 GCMs datasets(0.5 degree) <br> <br>
DOI: 10.6084/m9.figshare.21641300.v7
title: Young Hoon Soong & Chung, E-S. Monthly potential evapotranspiration metadata download link and code. Figshare,

description: Regridding Global CMIP6 GCMs datasets(0.5 degree) <br> <br>
DOI: 10.6084/m9.figshare.21641300.v8
title: Young Hoon Soong & Chung, E-S. Monthly potential evapotranspiration metadata download link and python code. Figshare,

description: Regridding Global CMIP6 GCMs datasets(0.5 degree) <br> <br>
DOI: 10.6084/m9.figshare.21641300.v9
title: Young Hoon Soong & Chung, E-S. Monthly potential evapotranspiration metadata download link and python code. Figshare

description: Regridding Global CMIP6 GCMs datasets(0.5 degree) <br> <br>
DOI: 10.6084/m9.figshare.21781943
title: Baseline subtracted scattering curves of soluble MtrC and MtrC C453A in 20 mM HEPES, 50 mM NaCl, pH 7.5

description: SAXS scattering curves of solublised MtrC and Solublised MtrC C453A
DOI: 10.6084/m9.figshare.21781928.v1
title: Tsuga data of Taro Co and modern lake sediments.xlsx

description: This dataset contains fossil Tsuga data from Lake Taro Co and main pollen taxa from 90 lakes on the central and western Tibetan Plateau.
DOI: 10.34740/kaggle/dsv/4777695
title: 2021 World Population (updated daily)
DOI: 10.6084/m9.figshare.21781952
title: Sup. Table 2_Differentially expressed genes P635L R636Q mice

description: Sup. Table 2_Differentially expressed genes P635L R636Q mice
DOI: 10.6084/m9.figshare.21781952.v1
title: Sup. Table 2_Differentially expressed genes P635L R636Q mice

description: Sup. Table 2_Differentially expressed genes P635L R636Q mice
DOI: 10.6084/m9.figshare.21781964
title: Sup. Table 3_Differentially spliced genes P635L R636Q mice

description: Sup. Table 3_Differentially spliced genes P635L R636Q mice
DOI: 10.6084/m9.figshare.21781964.v1
title: Sup. Table 3_Differentially spliced genes P635L R636Q mice

description: Sup. Table 3_Differentially spliced genes P635L R636Q mice
DOI: 10.6084/m9.figshare.21781973
title: Sup. Table 6 Tissue specific variants WGS.

description: Sup. Table 6 Tissue specific variants WGS.
DOI: 10.6084/m9.figshare.21781973.v1
title: Sup. Table 6 Tissue specific variants WGS.

description: Sup. Table 6 Tissue specific variants WGS.
DOI: 10.6084/m9.figshare.21781979
title: Sup. Table 4_Differentially expressed genes snRNA-seq

description: Sup. Table 4_Differentially expressed genes snRNA-seq
DOI: 10.6084/m9.figshare.21781979.v1
title: Sup. Table 4_Differentially expressed genes snRNA-seq

description: Sup. Table 4_Differentially expressed genes snRNA-seq
DOI: 10.5281/zenodo.5643266
title: A 3D geomodel of the deep aquifers in the Orléans area of the southern Paris Basin (France)

description: Construction of this dataset is described in the peer-reviewed publication: Mas, P., Calcagno, P., Caritg-Monnot, S. <em>et al.</em> A 3D geomodel of the deep aquifers in the Orléans area of the southern Paris Basin (France). <em>Sci Data</em> <strong>9</strong>, 781 (2022). https://doi.org/10.1038/s41597-022-01876-4 Each geomodel is available in the form of the following files and formats: Metadata sheet description pdf format GeoModeller project format PDF3D format TSurf format VTK format
DOI: 10.5281/zenodo.5643265
title: A 3D geomodel of the deep aquifers in the Orléans area of the southern Paris Basin (France)

description: Construction of this dataset is described in the peer-reviewed publication: Mas, P., Calcagno, P., Caritg-Monnot, S. <em>et al.</em> A 3D geomodel of the deep aquifers in the Orléans area of the southern Paris Basin (France). <em>Sci Data</em> <strong>9</strong>, 781 (2022). https://doi.org/10.1038/s41597-022-01876-4 Each geomodel is available in the form of the following files and formats: Metadata sheet description pdf format GeoModeller project format PDF3D format TSurf format VTK format
DOI: 10.34740/kaggle/dsv/4777787
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.7003747
title: Dataset for In silico study of novel inhibitors to Pseudomonas aeruginosa Lipase enzyme

description: Tarballs of docked structures, MD trajectories and BPMD simulations of novel inhibitors targeting the P. aeruginosa Lipase enzyme. The LIPASE.rar file contains all data for docked structures, BPMD simulations and replica number 3 of the MD simulations. MD simulation data from replicas 1 and 2 are available in the other two rar files.
DOI: 10.5281/zenodo.7003746
title: Dataset for In silico study of novel inhibitors to Pseudomonas aeruginosa Lipase enzyme

description: Tarballs of docked structures, MD trajectories and BPMD simulations of novel inhibitors targeting the P. aeruginosa Lipase enzyme. The LIPASE.rar file contains all data for docked structures, BPMD simulations and replica number 3 of the MD simulations. MD simulation data from replicas 1 and 2 are available in the other two rar files.
DOI: 10.6084/m9.figshare.21559062
title: Supplementary Material for: Stepwise approach for acquisition of microsurgical skills through rat orthotopic liver transplantation experiments

description: Although rat liver transplantation (LT) is useful in training surgeons to perform microsurgery, mastering these surgical techniques remains difficult. Systematized training protocols are needed that enable learning of the proper skills in a short period of time. The present study describes an efficient five-step rat LT training protocol for surgeons designed to be mastered within 3 months through continuous training. The first step was to review all procedures by watching full videos of rat LT and to watch actual LT operations performed by a skilled surgeon, enabling recognition of the anatomy of rat abdominal organs. The second step was to perform ten donor operations, including ex-vivo graft preparation, to learn the atraumatic and delicate techniques. The third step was to perform ten LTs, with the goal of achieving an anhepatic time &lt; 20 min and surviving until the next day. The fourth step was to perform ten additional LTs, with the goal of achieving 7 day survival. The fifth step was to perform 5-10 more LTs, with the goal of achieving 7 day survival in five consecutive LT operations. Systematizing the training was found to increases its efficiency. Furthermore, determining the specific number of operations in advance is useful to maintain motivation for training. Mastering efficient rat LT will not only enhance the success of preclinical research, but will enable young surgeons to better perform vascular anastomoses under a microscope in humans.
DOI: 10.6084/m9.figshare.20367301
title: Italian seismic amplification factors for peak ground acceleration and peak ground velocity

description: Ground motion modification over large areas is generally evaluated by focusing on source effects disregarding local lithostratigraphic site conditions. Hence, amplification maps of peak ground acceleration and peak ground velocity are proposed to improve the forecast of ground motion on a national scale. Topological information about litho-type successions and soil mechanical behaviour were retrieved from the Italian database of seismic microzonation and more than 30 million of seismic site response analyses were performed to quantify the amplification factors (i.e. the ratio between expected ground motion at the site of interest and that at the outcropping engineering bedrock). The maximum value of the amplified peak ground acceleration on the Italian territory results in about twice as much as the value expected at the outcropping of the engineering bedrock. Finally, damage scenario maps based on the amplified ground motion could be produced as a supporting tool for urban planning and emergency system management.
DOI: 10.6084/m9.figshare.20367301.v1
title: Italian seismic amplification factors for peak ground acceleration and peak ground velocity

description: Ground motion modification over large areas is generally evaluated by focusing on source effects disregarding local lithostratigraphic site conditions. Hence, amplification maps of peak ground acceleration and peak ground velocity are proposed to improve the forecast of ground motion on a national scale. Topological information about litho-type successions and soil mechanical behaviour were retrieved from the Italian database of seismic microzonation and more than 30 million of seismic site response analyses were performed to quantify the amplification factors (i.e. the ratio between expected ground motion at the site of interest and that at the outcropping engineering bedrock). The maximum value of the amplified peak ground acceleration on the Italian territory results in about twice as much as the value expected at the outcropping of the engineering bedrock. Finally, damage scenario maps based on the amplified ground motion could be produced as a supporting tool for urban planning and emergency system management.
DOI: 10.6084/m9.figshare.19554674
title: Picher field underground mine workings of the abandoned Tri-State Lead-Zinc Mining District in the United States

description: Mining began in the Picher field, in the Oklahoma and Kansas portion of the Tri-State Lead-Zinc Mining District in the United States, during the 1900s and ceased in the 1970s, producing an estimated 1.5 million metric tons (m-tons) of lead and 8 million m-tons of zinc. Over 400 historical maps of the underground mine workings were compiled into a single, easily editable map. This map was used to create 3D renderings for calculation of underground mine workings area and volume estimates. The workings have an estimated volume of 9,870 ha-meters (80,000 ac-ft), covering an area of 1,440 hectares (3,560 acres). The map and subsequent calculations should be considered to be based on the minimum extent of the mining field due to the likelihood that many historical maps were likely lost or destroyed. The format of the map allows for continuous updates as new information becomes available.
DOI: 10.6084/m9.figshare.19554674.v2
title: Picher field underground mine workings of the abandoned Tri-State Lead-Zinc Mining District in the United States

description: Mining began in the Picher field, in the Oklahoma and Kansas portion of the Tri-State Lead-Zinc Mining District in the United States, during the 1900s and ceased in the 1970s, producing an estimated 1.5 million metric tons (m-tons) of lead and 8 million m-tons of zinc. Over 400 historical maps of the underground mine workings were compiled into a single, easily editable map. This map was used to create 3D renderings for calculation of underground mine workings area and volume estimates. The workings have an estimated volume of 9,870 ha-meters (80,000 ac-ft), covering an area of 1,440 hectares (3,560 acres). The map and subsequent calculations should be considered to be based on the minimum extent of the mining field due to the likelihood that many historical maps were likely lost or destroyed. The format of the map allows for continuous updates as new information becomes available.
DOI: 10.6084/m9.figshare.19077104
title: Coralligenous banks along the western and northern continental shelf of Sardinia Island (Mediterranean Sea)

description: Mapping of coralligenous banks was carried out along the continental shelf of the northern and western margin of Sardinia Island (Italy, western Mediterranean Sea) in the context of the European Marine Strategy Framework Directive (MSFD, 2008/56/EC). Coralligenous banks are bioconstructions produced by calcareous coralline algae. Seafloor mapping was carried out through multibeam echosounder surveys and video transects, using a Remote Operating Vehicles (ROV), in areas not formerly explored. A high-resolution digital model of the seabed (DTM) was obtained from multibeam data. A total surface of 436 km2 of sparse patches of coralligenous banks was mapped in the depth range ~40-160 m. A final map of coralligenous habitat distributions along the western and northern continental shelf of Sardinia (scale 1:250,000) was produced. The base-map is formed by the shaded DTM of the seabed. Other mapped features include the edge of the continental shelf and the distribution of rocky seabed.
DOI: 10.6084/m9.figshare.19077104.v1
title: Coralligenous banks along the western and northern continental shelf of Sardinia Island (Mediterranean Sea)

description: Mapping of coralligenous banks was carried out along the continental shelf of the northern and western margin of Sardinia Island (Italy, western Mediterranean Sea) in the context of the European Marine Strategy Framework Directive (MSFD, 2008/56/EC). Coralligenous banks are bioconstructions produced by calcareous coralline algae. Seafloor mapping was carried out through multibeam echosounder surveys and video transects, using a Remote Operating Vehicles (ROV), in areas not formerly explored. A high-resolution digital model of the seabed (DTM) was obtained from multibeam data. A total surface of 436 km2 of sparse patches of coralligenous banks was mapped in the depth range ~40-160 m. A final map of coralligenous habitat distributions along the western and northern continental shelf of Sardinia (scale 1:250,000) was produced. The base-map is formed by the shaded DTM of the seabed. Other mapped features include the edge of the continental shelf and the distribution of rocky seabed.
DOI: 10.6084/m9.figshare.20445616
title: Bioclimatic drought trend study through the application of the ombroxeric index. A case study: the province of León (Spain)

description: The ombroxeric index (OXI), a drought-indicative bioclimatic index based on the Rivas-Martínez Worldwide Bioclimatic Classification System (WBCS), was used in this work to establish the ombroxericity trends in a defined study area: the province of Leon (Spain). On the basis of large time-scale climatological gridded databases (MOPREDAS and MOTEDAS), with data from 1951 to 2010 at monthly, seasonal an annual study level, a Mann-Kendall test-based trend analysis was carried out and a geostatistical interpolation procedure, Empirical Bayesian Kriging (EBK), was applied. Statistically significant increases were revealed in the months of March and June, as well as in the summer period. These increments are greater in the southernmost areas and could be related with changes in some teleconnection patterns. With this up-to-date approach, besides being aware of the direct bioclimate-altering consequences of the climate change, the prediction of the implications in the vegetation is made possible, due to the typological-predictive character of the model of climate-vegetation reciprocity provided by the WBCS.
DOI: 10.6084/m9.figshare.19727592
title: Towards deciphering the Cenozoic evolution of the East Pisco Basin (southern Peru)

description: The Cenozoic succession of the East Pisco Basin preserves the sedimentary record of several episodes of deformation of the forearc crust along the Peruvian margin. The 1:50,000 scale geological map presented here encompasses an area of about 1,000 km<sup>2</sup> lying astride the Ica River, and contributes to our understanding of the timing and mode of basin filling and deformation. Our novel two-fold megasequence framework provides a sound basis for establishing a first-order tectono-stratigraphic setting of the mid-Eocene–upper Miocene succession exposed in the study area. We interpret that the mid-Eocene to lower Oligocene succession studied in this work (megasequence P) was deposited in a single forearc basin, which was dissected into the present-day West and East Pisco basins by a fault-bounded basement high during the late Oligocene, and subsequently overlain by the Miocene fill of the East Pisco basin (megasequence N).
DOI: 10.6084/m9.figshare.19727592.v2
title: Towards deciphering the Cenozoic evolution of the East Pisco Basin (southern Peru)

description: The Cenozoic succession of the East Pisco Basin preserves the sedimentary record of several episodes of deformation of the forearc crust along the Peruvian margin. The 1:50,000 scale geological map presented here encompasses an area of about 1,000 km<sup>2</sup> lying astride the Ica River, and contributes to our understanding of the timing and mode of basin filling and deformation. Our novel two-fold megasequence framework provides a sound basis for establishing a first-order tectono-stratigraphic setting of the mid-Eocene–upper Miocene succession exposed in the study area. We interpret that the mid-Eocene to lower Oligocene succession studied in this work (megasequence P) was deposited in a single forearc basin, which was dissected into the present-day West and East Pisco basins by a fault-bounded basement high during the late Oligocene, and subsequently overlain by the Miocene fill of the East Pisco basin (megasequence N).
DOI: 10.6084/m9.figshare.20445616.v1
title: Bioclimatic drought trend study through the application of the ombroxeric index. A case study: the province of León (Spain)

description: The ombroxeric index (OXI), a drought-indicative bioclimatic index based on the Rivas-Martínez Worldwide Bioclimatic Classification System (WBCS), was used in this work to establish the ombroxericity trends in a defined study area: the province of Leon (Spain). On the basis of large time-scale climatological gridded databases (MOPREDAS and MOTEDAS), with data from 1951 to 2010 at monthly, seasonal an annual study level, a Mann-Kendall test-based trend analysis was carried out and a geostatistical interpolation procedure, Empirical Bayesian Kriging (EBK), was applied. Statistically significant increases were revealed in the months of March and June, as well as in the summer period. These increments are greater in the southernmost areas and could be related with changes in some teleconnection patterns. With this up-to-date approach, besides being aware of the direct bioclimate-altering consequences of the climate change, the prediction of the implications in the vegetation is made possible, due to the typological-predictive character of the model of climate-vegetation reciprocity provided by the WBCS.
DOI: 10.6084/m9.figshare.20387118.v1
title: Stratigraphic and tectonic architecture of the Middle Jurassic-Upper Cretaceous at the southern front of the Central High Atlas (Morocco): a cartographic revision

description: The Middle Jurassic (Bathonian)-Upper Cretaceous (Maastrichtian) deposits exposed at the southern front of the Central High Atlas (CHA, Southern Morocco) include thick fluvial successions largely undifferentiated in previous studies. These continental strata record a long period of relief formation due to crustal shortening and subsequent denudation that predated the Cenozoic, syn-collisional, tectonic inversion of the CHA. This study, carried out through mapping along more than 270 km between Ouarzazate and Errachidia towns, firstly proposes a rock-stratigraphic unified scheme based on a framework of unconformity-bounded stratigraphic units, including sub-units, differentiated for their specific depositional meaning. Secondly, the geological maps and related cross-sections illustrate the evidence of syn-depositional shortening with distinct deformation styles, outlining pre- and syn-collisional tectonic inversion.
DOI: 10.6084/m9.figshare.20387118
title: Stratigraphic and tectonic architecture of the Middle Jurassic-Upper Cretaceous at the southern front of the Central High Atlas (Morocco): a cartographic revision

description: The Middle Jurassic (Bathonian)-Upper Cretaceous (Maastrichtian) deposits exposed at the southern front of the Central High Atlas (CHA, Southern Morocco) include thick fluvial successions largely undifferentiated in previous studies. These continental strata record a long period of relief formation due to crustal shortening and subsequent denudation that predated the Cenozoic, syn-collisional, tectonic inversion of the CHA. This study, carried out through mapping along more than 270 km between Ouarzazate and Errachidia towns, firstly proposes a rock-stratigraphic unified scheme based on a framework of unconformity-bounded stratigraphic units, including sub-units, differentiated for their specific depositional meaning. Secondly, the geological maps and related cross-sections illustrate the evidence of syn-depositional shortening with distinct deformation styles, outlining pre- and syn-collisional tectonic inversion.