cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3599840_d3
title: MOESM3 of Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis

description: Additional file 3: Table S1. Microarray analysis table of fpgs1-1 and wild-type plants in 35-d-old stem of Arabidopsis.
DOI: 10.6084/m9.figshare.c.3599591_d2
title: Additional file 1: of Prediction of redox-sensitive cysteines using sequential distance and other sequence-based features

description: Table S1. Ranks of top forty features selected by SVM-RFE using RSC758 dataset. Table S2. Ranks of top twenty features selected by SVM-RFE using BALOSCTdb dataset. Table S3. RSC758 dataset used in this study. Table S4. Physical-chemical properties for each amino acid residue. (XLSX 81 kb)
DOI: 10.6084/m9.figshare.c.3599360_d1
title: Additional file 1: of Is PEEK cage better than titanium cage in anterior cervical discectomy and fusion surgery? A meta-analysis

description: Raw data of RevMan 5.1 for Windows. (XLS 27Â kb)
DOI: 10.6084/m9.figshare.c.3599318_d1
title: Additional file 1. of Clinical characteristics and prognosis of 272 postterm choriocarcinoma patients at Peking Union Medical College Hospital: a retrospective cohort study

description: The prognosis related factors of every patient were listed in the worksheet. (XLSX 27.7 kb)
DOI: 10.15468/dl.58y7zt
title: Occurrence Download

description: A dataset containing 817 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eucinostomus dowii (Gill, 1863)"
 ]
}

 The dataset includes 817 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032263-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8rdn7x
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Seriola dorsalis (Gill, 1863)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032264-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3599060_d5
title: Additional file 2: of Phenotypic evaluation and genetic dissection of resistance to Phytophthora sojae in the Chinese soybean mini core collection

description: Information of SNP markers used in association mapping study. (XLS 175Â kb)
DOI: 10.15468/dl.48scf5
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is IND.17_1",
 "TaxonKey is Achatina fulica Bowdich, 1822"
 ]
}

 The dataset includes 22 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032265-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25810/qqj3-y629
title: FIRED El Salvador Nov 2000 - July 2024

description: This is event-level polygons for the fire event delineation (FIRED) product for EL SALVADOR from November 2000  to July 2024. It is derived from the MODIS MCD64A1 burned area product (see https://lpdaac.usgs.gov/products/mcd64a1v061/ for more details). The MCD64A1 is a monthly raster grid of estimated burned dates. Firedpy (https://github.com/earthlab/firedpy) is an algorithm that converts these rasters into events by stacking the entire time series into a spatial-temporal data cube, then uses an algorithm to assign event identification numbers to pixels that fit into the same 3-dimensional spatial temporal window. This particular dataset was created using a spatial parameter of 1 pixels and 5 days. Daily polygons are included and the event identification numbers are the same for both files, but the event-level product has only single polygons for each entire event, while the daily product has separate polygons for each date per event. See the associated paper for more details on the methods and more:

Balch, J.K.; St. Denis, L.A.; Mahood, A.L.; Mietkiewicz, N.P.; Williams, T.M.; McGlinchy, J.; Cook, M.C. FIRED (Fire Events Delineation): An Open, Flexible Algorithm and Database of US Fire Events Derived from the MODIS Burned Area Product (2001–2019). Remote Sens. 2020, 12, 3498. https://doi.org/10.3390/rs12213498
DOI: 10.6084/m9.figshare.c.3598730_d1
title: Additional file 1: Table S1. of Analysis of codon usage bias of envelope glycoprotein genes in nuclear polyhedrosis virus (NPV) and its relation to evolution

description: All the indices of total genes. (XLS 27 kb)
DOI: 10.6084/m9.figshare.c.3598652_d11
title: Additional file 9: of Genome-wide patterns of copy number variation in the Chinese yak genome

description: Over-representation / under-representation of molecular function, cellular component and biological process terms. (XLS 30 kb)
DOI: 10.6084/m9.figshare.c.3598652_d10
title: Additional file 1: of Genome-wide patterns of copy number variation in the Chinese yak genome

description: Basic information relating to yak used in this study, their types, geographical distributions and resequencing data used in the CNV analysis. (XLS 45 kb)
DOI: 10.6084/m9.figshare.c.3598652_d9
title: Additional file 2: of Genome-wide patterns of copy number variation in the Chinese yak genome

description: List of all 98,441 CNV events in this study. (XLSX 2719 kb)
DOI: 10.6084/m9.figshare.c.3598652_d8
title: Additional file 4: of Genome-wide patterns of copy number variation in the Chinese yak genome

description: List of all CNVRs in the yak genome. (XLSX 784 kb)
DOI: 10.6084/m9.figshare.c.3598652_d6
title: Additional file 11: of Genome-wide patterns of copy number variation in the Chinese yak genome

description: Population-differentiated CNVRs with annotated protein coding genes when comparing yak living at high and low altitudes. (XLS 35 kb)
DOI: 10.6084/m9.figshare.c.3598652_d7
title: Additional file 5: of Genome-wide patterns of copy number variation in the Chinese yak genome

description: Primer sequences and confirmation results for qPCR. (XLS 39 kb)
DOI: 10.6084/m9.figshare.c.3598652_d4
title: Additional file 3: of Genome-wide patterns of copy number variation in the Chinese yak genome

description: Summary of CNV events in different individuals. (XLS 35 kb)
DOI: 10.6084/m9.figshare.c.3598652_d3
title: Additional file 10: of Genome-wide patterns of copy number variation in the Chinese yak genome

description: Population-differentiated CNVRs with annotated protein coding genes when comparing wild and domestic yak. (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3598652_d1
title: Additional file 6: of Genome-wide patterns of copy number variation in the Chinese yak genome

description: Statistics for yak segmental duplication. (XLS 28 kb)
DOI: 10.5281/zenodo.14422174
title: Mutation accumulation of SARS-CoV-2 genome in North America, South America, and Oceania: Analysis of over 10.2 million sequences samples from Global Initiative on Sharing Avian Influenza Data

description: Supplementary file 1, Nonsynonymous substitutions identified across three regions.Supplementary file 2,  A list of all gene-specific mutations, including their observed frequencies at each time point,Supplementary file 3, Differences in S gene mutation frequencies across three geographic regions
DOI: 10.5281/zenodo.14422175
title: Mutation accumulation of SARS-CoV-2 genome in North America, South America, and Oceania: Analysis of over 10.2 million sequences samples from Global Initiative on Sharing Avian Influenza Data

description: Supplementary file 1, Nonsynonymous substitutions identified across three regions.Supplementary file 2,  A list of all gene-specific mutations, including their observed frequencies at each time point,Supplementary file 3, Differences in S gene mutation frequencies across three geographic regions
DOI: 10.6084/m9.figshare.c.3598523_d2
title: Additional file 3: Table S3. of Whole genome sequence analysis of the TALLYHO/Jng mouse

description: Classification of TH indels by sets of SO terms associated with the indel. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3598523_d1
title: Additional file 4: Table S4. of Whole genome sequence analysis of the TALLYHO/Jng mouse

description: PCR primer sequences used for validation of selected variants. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.c.3598472_d1
title: Additional file 2: Table S1. of Genome-wide identification and characterisation of HOT regions in the human genome

description: H1hESC TFBS Clusters info. Table S2. Comparison of motifless binding peaks and HOT regions. Table S3. Information of HOT regions in 154 files. Table S4. Key TF genes. Table S5. Developmental TF genes. Table S6. Repetitive elements in HOT regions. Table S7. 1046 Validated elements in HOT regions. Table S8. gene list of associated “gained” HOT regions. Table S9. Enriched TF gene list. Table S10. Enrichment of bivalent genes in HOT regions. Table S11 GO analysis of activated HOT regions in H1-derived cells. (XLSX 766 kb)
DOI: 10.6084/m9.figshare.c.3598475_d1
title: Additional file 1: of Drug resistance characteristics and cluster analysis of M. tuberculosis in Chinese patients with multiple episodes of anti-tuberculosis treatment

description: MIRU-VNTR data of the Beijing family Mtb strain. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3598430_d4
title: MOESM3 of Comparative analysis of the secretomes of Schizophyllum commune and other wood-decay basidiomycetes during solid-state fermentation reveals its unique lignocellulose-degrading enzyme system

description: Additional file 3: Table S2. Identified proteins in the secretomes of four fungi during SSF on Jerusalem artichoke stalk.
DOI: 10.15468/dl.5canhx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paradeontacylix megalaspium Lakshmi & Madhavi, 2007",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032266-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3598445_d2
title: Additional file 1: Table S1a. of Modelling the consequences of a reduction in alcohol consumption among patients with alcohol dependence based on real-life observational data

description: Deterministic sensitivity analysis (risk parameters) - Confidence intervals of number of events per 100,000 patient-years by HDD category. Table S1b. Deterministic sensitivity analysis (risk parameters) - Confidence intervals of number of events per 100,000 patient-years by TAC category. (ZIP 30 kb)
DOI: 10.6084/m9.figshare.c.3598445_d1
title: Additional file 2: Table S2a. of Modelling the consequences of a reduction in alcohol consumption among patients with alcohol dependence based on real-life observational data

description: Probabilisitic sensitivity analysis (alcohol consumption simulation coefficients) - Confidence intervals of number of events per 100,000 patient-years by HDD category. Table S2b. Probabilisitic sensitivity analysis (alcohol consumption simulation coefficients) - Confidence intervals of number of events per 100,000 patient-years by TAC category. (ZIP 30 kb)
DOI: 10.6084/m9.figshare.c.3598391_d8
title: Additional file 6: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

description: Estimated Ka and Ks values of 625 orthologous gene pairs (Ka/Ksâ  &gt;â  1). The sequence length, nonsynonymous substitution rate (Ka), synonymous substitution rate (Ks), Ka/Ks and P-value are shown. (XLSX 51Â kb)
DOI: 10.6084/m9.figshare.c.3598283_d1
title: Additional file 2: Table S1. of The influence of a short-term gluten-free diet on the human gut microbiome

description: Results macronutrient intake per participant. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3598217_d1
title: MOESM1 of Metabolic engineering of Zymomonas mobilis for 2,3-butanediol production from lignocellulosic biomass sugars

description: Additional file 1:Table S1. Sequence information for constructs and major plasmids (1A) used in this work, systems biology datasets used to evaluate Z. mobilis genes that may potentially affect lactate and heterologous 2,3-BDO production (1B), as well as fermentation data and yield at different conditions (1C).
DOI: 10.6084/m9.figshare.c.3597833_d9
title: Additional file 2: Table S1. of Comprehensive analyses of tumor immunity: implications for cancer immunotherapy

description: Purity correlated genes. (XLSX 442 kb)
DOI: 10.6084/m9.figshare.c.3597881_d1
title: Additional file 2: of Comparative transcriptome sequencing and de novo analysis of Vaccinium corymbosum during fruit and color development

description: File S2. Pathway assignment based on KEGG. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3597833_d7
title: Additional file 10: Table S8. of Comprehensive analyses of tumor immunity: implications for cancer immunotherapy

description: HPCA cell index. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3597833_d8
title: Additional file 7: Table S6. of Comprehensive analyses of tumor immunity: implications for cancer immunotherapy

description: Comparison with CIBERSORT. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3597833_d6
title: Additional file 6: Table S5. of Comprehensive analyses of tumor immunity: implications for cancer immunotherapy

description: Additional cancer-specific genes. (XLSX 990 kb)
DOI: 10.6084/m9.figshare.c.3597833_d4
title: Additional file 5: Table S4. of Comprehensive analyses of tumor immunity: implications for cancer immunotherapy

description: CT genes. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.c.3597833_d3
title: Additional file 4: Table S3. of Comprehensive analyses of tumor immunity: implications for cancer immunotherapy

description: Clinical reports on CD8 T cells. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3597833_d1
title: Additional file 9: Table S7. of Comprehensive analyses of tumor immunity: implications for cancer immunotherapy

description: All statistical analysis. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3597761_d5
title: Additional file 3: Table S1. of Cogena, a novel tool for co-expressed gene-set enrichment analysis, applied to drug repositioning and drug mode of action discovery

description: Results of pathway analysis for psoriasis by GSEA, WGCNA and CTD for GSE13355. Pathways from the result of GSEA and pathways in CTD with â  psoriasisâ   as the enquiry are shown in this file, respectively. (XLS 82Â kb)
DOI: 10.6084/m9.figshare.c.3597761_d6
title: Additional file 6: Table S2. of Cogena, a novel tool for co-expressed gene-set enrichment analysis, applied to drug repositioning and drug mode of action discovery

description: Results of drug repositioning for psoriasis based on CMap and NFFinder for GSE13355. The drug repositioning results by CMap and NFFinder are shown. (XLS 972Â kb)
DOI: 10.6084/m9.figshare.c.3597710_d1
title: Additional file 2: of Molecular characterization and functional analysis of barley semi-dwarf mutant Riso no. 9265

description: Table S2. Oligonucleotide sequences used in qRT-PCR assays. (XLS 17 kb)
DOI: 10.6084/m9.figshare.c.3597710_d2
title: Additional file 1: of Molecular characterization and functional analysis of barley semi-dwarf mutant Riso no. 9265

description: Table S1. Primers used to detect flanking genes or sequences of HvGA20ox 2 . (XLS 18 kb)
DOI: 10.15468/dl.ajq7d4
title: Occurrence Download

description: A dataset containing 432 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paralichthys olivaceus (Temminck & Schlegel, 1846)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 432 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032267-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3597539_d2
title: Additional file 4 of ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database

description: Distances of intra protein identified by ECL. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3597500_d7
title: Additional file 1: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

description: Details of markers sequences. Sequences of each SLAF marker on the maps. (XLS 992 kb)
DOI: 10.6084/m9.figshare.c.3597461_d10
title: Additional file 9: Table S9. of Identification of novel and differentially expressed MicroRNAs in goat enzootic nasal adenocarcinoma

description: Significantly enriched signaling pathways (mâ  =â  83) of gene targets of the significantly increased miRNAs in ENA. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3597500_d6
title: Additional file 2: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

description: Details of markers genotypes for F1 individuals. Genotypes of each SLAF marker on the maps for F1 individuals. (XLS 3163 kb)
DOI: 10.6084/m9.figshare.c.3597461_d9
title: Additional file 7: Table S7. of Identification of novel and differentially expressed MicroRNAs in goat enzootic nasal adenocarcinoma

description: Node attributes of the differentially expressed miRNAs and their differentially expressed target genes in ENA. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3597500_d5
title: Additional file 3: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

description: SLAF markers on the 16 linkage groups (LGs). The SLAF markers and their locations in each LG on the maps. (XLS 404 kb)
DOI: 10.6084/m9.figshare.c.3597461_d8
title: Additional file 4: Table S4. of Identification of novel and differentially expressed MicroRNAs in goat enzootic nasal adenocarcinoma

description: Significantly differentially expressed miRNAs in ENA. Positive FoldChange_Log2 indicates upregulation in ENA relative to the para-cancerous tissues; a negative FoldChange_Log2 indicates downregulation in ENA relative to the para-cancerous tissues; inf indicates no expression in para-cancerous tissues; â  inf indicates no expression in ENA. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3597500_d4
title: Additional file 4: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

description: Sequences of discovered SNPs. SNP loci of every marker on the maps are marked in the lowercase. (XLS 992 kb)
DOI: 10.6084/m9.figshare.c.3597461_d7
title: Additional file 5: Table S5. of Identification of novel and differentially expressed MicroRNAs in goat enzootic nasal adenocarcinoma

description: Predicted target genes of the differently expressed miRNAs in ENA. (XLSX 2391 kb)
DOI: 10.6084/m9.figshare.c.3597500_d3
title: Additional file 7: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

description: Relative resistance index of walnut individuals. Statistics of data concerning the relative resistance index (RRI) of 86 individuals containing paternal parent, maternal parent and F1 offspring. (XLS 23 kb)
DOI: 10.6084/m9.figshare.c.3597461_d6
title: Additional file 3: Table S3. of Identification of novel and differentially expressed MicroRNAs in goat enzootic nasal adenocarcinoma

description: The expression of miRNAs in ENA and para-cancerous tissues. (XLSX 171 kb)
DOI: 10.6084/m9.figshare.c.3597509_d1
title: Additional file 1: Appendix 1. of Proteomics analysis reveals novel host molecular mechanisms associated with thermotherapy of ‘Ca. Liberibacter asiaticus’-infected citrus plants

description: Mascot match results and peptide sequences of the 130 differentially-expressed spots presented in Fig. 3. (XLSX 3295 kb)
DOI: 10.6084/m9.figshare.c.3597500_d2
title: Additional file 5: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

description: Haplotype map of the integrated maps. Each row represents a marker. Markers are ranked in accordance with the map order. Each two columns represent an individual; blank columns are used between two individuals. The first and second columns represent the paternal and maternal chromosome, respectively. Green and blue represent the first and second allele from the parents, respectively. White represents the source of alleles that cannot be judged. Gray represents deleted alleles. (XLS 1321 kb)
DOI: 10.6084/m9.figshare.c.3597461_d5
title: Additional file 6: Table S6. of Identification of novel and differentially expressed MicroRNAs in goat enzootic nasal adenocarcinoma

description: Differentially expressed miRNAs and their differentially expressed target genes in ENA. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3597500_d1
title: Additional file 6: of Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.)

description: Heat map of the integrated maps. Markers of each row and column are ranked according to the map order; each small square represents the rate of recombination (r) between two markers. The domain of r is [0.0, 0.5]. The color varies from yellow to red if rMin ≤ r ≤ 3/8rMax. The color is red if r = 3/8rMax. The color varies from red to purple if 3/8rMax
DOI: 10.6084/m9.figshare.c.3597461_d4
title: Additional file 10: Table S10. of Identification of novel and differentially expressed MicroRNAs in goat enzootic nasal adenocarcinoma

description: Significantly enriched signaling pathways (mâ  =â  89) of gene targets of the significantly reduced miRNAs in ENA. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3597461_d3
title: Additional file 2: Table S2. of Identification of novel and differentially expressed MicroRNAs in goat enzootic nasal adenocarcinoma

description: Blast results of all miRNAs against human miRNAs in miRBase v21. (XLSX 152 kb)
DOI: 10.6084/m9.figshare.c.3597461_d1
title: Additional file 8: Table S8. of Identification of novel and differentially expressed MicroRNAs in goat enzootic nasal adenocarcinoma

description: Significantly enriched gene ontology categories the differentially expressed target genes of the differentially expressed miRNAs. (XLSX 85 kb)
DOI: 10.6084/m9.figshare.c.3597461_d2
title: Additional file 1: Table S1. of Identification of novel and differentially expressed MicroRNAs in goat enzootic nasal adenocarcinoma

description: The miRNAs expressed in samples detected by Illumina sequencing. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3597131_d19
title: Additional file 10: Table S8. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

description: Differentially expressed genes (FDR
DOI: 10.6084/m9.figshare.c.3597131_d17
title: Additional file 5: Table S3. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

description: Differentially expressed genes (FDR