cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4302083
title: Training dataset: Statistical analysis of a HEK/Ecoli Spike-in DIA dataset using MSstats

description: The uploaded files serve as a concise but meaningful training data set in the Galaxy training network (https://galaxyproject.github.io/training-material/). HEK and E.coli cell pellets were lysed with 5 % SDS, 50 mM triethylammonium bicarbonate (TEAB), pH 7.55. The obtained protein extracts were reduced by adding f.c. 5 mM TCEP and alkylated by the addition of f.c. 10 mM iodacetamide. Protein digestion and purification was performed on S-Trap columns. To ensure protein binding to the S-Trap columns, samples were acidified to a final concentration of 1.2 % phosphoric acid (~ pH 2). Six times the sample volume S-Trap buffer (90% aqueous methanol containing a final concentration of 100 mM TEAB, pH 7.1) was added to the samples which were then loaded on the columns and washed with S-Trap buffer. Protein digestion was performed with trypsin and LysC for one hour at 47 °C. Peptides were eluted in three steps with (1) 50 mM TEAB, (2) 0.2 % aqueous formic acid and (3) 50 % acetonitrile containing 0.2 % formic acid. Eluted peptides of HEK and E.coli were mixed in two different ratios and four replicates of each Spike/in ratio were measured and analysed using OpenSwathWorkflow in Galaxy. Results were exported using PyProphet and can be used for the statistical analysis and detection of the two different Spike-in Ratios. The Spike-in ratios were the following: Sample HEK E.coli <br> Spike_in_1 2.5 0.15<br> Spike_in_2 2.5 0.80 Besides the two PyProphet export files, we uploaded a sample annotation file as well as a comparison matrix file.<br> Additionally, we uploaded the Galaxy MSstats training result files: MSstats_ComparisonResult_export_tabular and MSstats_ComparisonResult_msstats_input.
DOI: 10.21258/1383416
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 897103
DOI: 10.21258/1425604
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 891864
DOI: 10.21258/1431620
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 902169
DOI: 10.21258/1425474
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 902043
DOI: 10.21258/1422089
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 891932
DOI: 10.5281/zenodo.4298926
title: Training dataset: DIA data analysis of a HEK/Ecoli Spike-in dataset using OpenSwathWorkflow

description: The eight raw files serve as a concise but meaningful training data set in the Galaxy training network (https://galaxyproject.github.io/training-material/). HEK and E.coli cell pellets were lysed with 5 % SDS, 50 mM triethylammonium bicarbonate (TEAB), pH 7.55. The obtained protein extracts were reduced by adding f.c. 5 mM TCEP and alkylated by the addition of f.c. 10 mM iodacetamide. Protein digestion and purification was performed on S-Trap columns. To ensure protein binding to the S-Trap columns, samples were acidified to a final concentration of 1.2 % phosphoric acid (~ pH 2). Six times the sample volume S-Trap buffer (90% aqueous methanol containing a final concentration of 100 mM TEAB, pH 7.1) was added to the samples which were then loaded on the columns and washed with S-Trap buffer. Protein digestion was performed with trypsin and LysC for one hour at 47 °C. Peptides were eluted in three steps with (1) 50 mM TEAB, (2) 0.2 % aqueous formic acid and (3) 50 % acetonitrile containing 0.2 % formic acid. Eluted peptides of HEK and E.coli were mixed in two different ratios and four replicates of each Spike/in ratio were measured: Sample HEK E.coli MS method<br> Sample1 2.5 0.15 DIA<br> Sample2 2.5 0.15 DIA<br> Sample3 2.5 0.15 DIA<br> Sample4 2.5 0.15 DIA<br> Sample5 2.5 0.80 DIA<br> Sample6 2.5 0.80 DIA<br> Sample7 2.5 0.80 DIA<br> Sample8 2.5 0.80 DIA Additionally, iRT peptides were added and 1µg of each samples was measured using data independent acquisition with a Q-Exactive Plus mass spectrometer. Briefly, a scan range from 400-1000 m/Z was first covered by an MS1 scan followed by 25 consecutive MS2 scans (each 24 m/z broad). In the next cycle another MS1 scan was acquired followd by 26 MS2 scans (also 24m/z broad) in which the window centers were shifted by 50% compared to the previous cycle of MS2 scans. The resulting raw files contain overlapping MS2 scans. Besides the eight raw files, we uploaded a spectral library, a transition list for the iRT peptides as well as an sample annotation file.<br> Additionally, we uploaded the Galaxy PyProphet score training result files: PyProphet score report and PyProphet score.
DOI: 10.21258/1423802
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 891727
DOI: 10.25646/7718
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.21258/1421867
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 892988
DOI: 10.21258/1424011
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 892051
DOI: 10.21258/1384420
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 898072
DOI: 10.21258/1384281
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 897530
DOI: 10.21258/1423783
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 891749
DOI: 10.21258/1422591
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 891674
DOI: 10.21258/1384184
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 898858
DOI: 10.21258/1384055
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 899464
DOI: 10.6084/m9.figshare.13337042
title: SPOT_DEM_Nigeria_assessment

description: This dataset contains derived data from the SPOT DEM's analysis. Including a Microsoft Excel sheet containing elevation differences, coordinates and first order terrain derivatives; shapefiles of same terrain derivatives for Lagos; and maps for both Lagos and Abuja (including land cover maps).
DOI: 10.6084/m9.figshare.13337042.v1
title: Quality Assessment of the 20m SPOT DEM in Nigeria

description: This dataset contains derived data from the SPOT DEM's analysis. Including a Microsoft Excel sheet containing elevation differences, coordinates and first order terrain derivatives; shapefiles of same terrain derivatives for Lagos; and maps for both Lagos and Abuja (including land cover maps).
DOI: 10.6084/m9.figshare.13337048.v1
title: Assessing the interaction between Chinese sturgeon and wake behind D-shaped cylinder

description: This data deposit contains all the datasets needed to draw Figures (4,6) in the paper "Assessing the interaction between Chinese sturgeon and wake behind D-shaped cylinder", which is now under consideration for publication in Water Resources Research
DOI: 10.25505/fiz.icsd.cc24s7jq
title: CSD 1989503: Experimental Crystal Structure Determination

description: Related Article: Mai Lê Anh, Martin Kaiser, Madhav Prasad Ghimire, Manuel Richter, Klaus Koepernik, Markus Gruschwitz, Christoph Tegenkamp, Thomas Doert, Michael Ruck|2020|Chem.-Eur.J.|26|15549|doi:10.1002/chem.202001953
DOI: 10.5517/ccdc.csd.cc24swtn
title: CCDC 1990132: Experimental Crystal Structure Determination

description: Related Article: Shibo Xu, Koji Hirano, Masahiro Miura|2020|Org.Lett.|22|9059|doi:10.1021/acs.orglett.0c03444
DOI: 10.5517/ccdc.csd.cc25dlpw
title: CCDC 2008108: Experimental Crystal Structure Determination

description: Related Article: Gourab Kundu, Theresa Sperger, Kari Rissanen, Franziska Schoenebeck|2020|Angew.Chem.,Int.Ed.|59|21930|doi:10.1002/anie.202009115
DOI: 10.5517/ccdc.csd.cc25rpqc
title: CCDC 2018773: Experimental Crystal Structure Determination

description: Related Article: Haoke Chu, Jie Cheng, Junfeng Yang, Yin-Long Guo, Junliang Zhang|2020|Angew.Chem.,Int.Ed.|59|21991|doi:10.1002/anie.202010164
DOI: 10.5517/ccdc.csd.cc25ts2w
title: CCDC 2020768: Experimental Crystal Structure Determination

description: Related Article: Glen P. Junor, Jan Lorkowski, Cory M. Weinstein, Rodolphe Jazzar, Cezary Pietraszuk, Guy Bertrand|2020|Angew.Chem.,Int.Ed.|59|22028|doi:10.1002/anie.202010744
DOI: 10.5517/ccdc.csd.cc25ts3x
title: CCDC 2020769: Experimental Crystal Structure Determination

description: Related Article: Glen P. Junor, Jan Lorkowski, Cory M. Weinstein, Rodolphe Jazzar, Cezary Pietraszuk, Guy Bertrand|2020|Angew.Chem.,Int.Ed.|59|22028|doi:10.1002/anie.202010744
DOI: 10.5517/ccdc.csd.cc25ts4y
title: CCDC 2020770: Experimental Crystal Structure Determination

description: Related Article: Glen P. Junor, Jan Lorkowski, Cory M. Weinstein, Rodolphe Jazzar, Cezary Pietraszuk, Guy Bertrand|2020|Angew.Chem.,Int.Ed.|59|22028|doi:10.1002/anie.202010744
DOI: 10.5517/ccdc.csd.cc25ts5z
title: CCDC 2020771: Experimental Crystal Structure Determination

description: Related Article: Glen P. Junor, Jan Lorkowski, Cory M. Weinstein, Rodolphe Jazzar, Cezary Pietraszuk, Guy Bertrand|2020|Angew.Chem.,Int.Ed.|59|22028|doi:10.1002/anie.202010744
DOI: 10.5517/ccdc.csd.cc25ts60
title: CCDC 2020772: Experimental Crystal Structure Determination

description: Related Article: Glen P. Junor, Jan Lorkowski, Cory M. Weinstein, Rodolphe Jazzar, Cezary Pietraszuk, Guy Bertrand|2020|Angew.Chem.,Int.Ed.|59|22028|doi:10.1002/anie.202010744
DOI: 10.5517/ccdc.csd.cc25ts71
title: CCDC 2020773: Experimental Crystal Structure Determination

description: Related Article: Glen P. Junor, Jan Lorkowski, Cory M. Weinstein, Rodolphe Jazzar, Cezary Pietraszuk, Guy Bertrand|2020|Angew.Chem.,Int.Ed.|59|22028|doi:10.1002/anie.202010744
DOI: 10.5517/ccdc.csd.cc25ts82
title: CCDC 2020774: Experimental Crystal Structure Determination

description: Related Article: Glen P. Junor, Jan Lorkowski, Cory M. Weinstein, Rodolphe Jazzar, Cezary Pietraszuk, Guy Bertrand|2020|Angew.Chem.,Int.Ed.|59|22028|doi:10.1002/anie.202010744
DOI: 10.5517/ccdc.csd.cc25ts93
title: CCDC 2020775: Experimental Crystal Structure Determination

description: Related Article: Glen P. Junor, Jan Lorkowski, Cory M. Weinstein, Rodolphe Jazzar, Cezary Pietraszuk, Guy Bertrand|2020|Angew.Chem.,Int.Ed.|59|22028|doi:10.1002/anie.202010744
DOI: 10.5517/ccdc.csd.cc25w2lr
title: CCDC 2022024: Experimental Crystal Structure Determination

description: Related Article: Shibo Xu, Koji Hirano, Masahiro Miura|2020|Org.Lett.|22|9059|doi:10.1021/acs.orglett.0c03444
DOI: 10.5517/ccdc.csd.cc25w2ms
title: CCDC 2022025: Experimental Crystal Structure Determination

description: Related Article: Shibo Xu, Koji Hirano, Masahiro Miura|2020|Org.Lett.|22|9059|doi:10.1021/acs.orglett.0c03444
DOI: 10.5517/ccdc.csd.cc25w8jw
title: CCDC 2022208: Experimental Crystal Structure Determination

description: Related Article: Karre Nagaraju, Dongshun Ni, Dawei Ma|2020|Angew.Chem.,Int.Ed.|59|22039|doi:10.1002/anie.202011093
DOI: 10.5517/ccdc.csd.cc25w8kx
title: CCDC 2022209: Experimental Crystal Structure Determination

description: Related Article: Karre Nagaraju, Dongshun Ni, Dawei Ma|2020|Angew.Chem.,Int.Ed.|59|22039|doi:10.1002/anie.202011093
DOI: 10.21258/1419336
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 891908
DOI: 10.5281/zenodo.4307779
title: Uniprot datasets with variable patch sizes for testing taxonomic classification

description: These datasets can be used to test the performance of the taxonomic classification model deposited at https://zenodo.org/record/4306499 and trained using the data deposited at https://zenodo.org/record/4306240 with different patch sizes: 300 +- 10 bases 300 +- 25 bases 300 +- 50 bases Those are the same sequences as used in the test dataset mentioned above, but sampled at different lengths.
description: The authors acknowledge the financial support by the Federal Ministry of Education and Research of Germany (BMBF) in the project deep.Health (project number 13FH770IX6).
DOI: 10.5281/zenodo.4307778
title: Uniprot datasets with variable patch sizes for testing taxonomic classification

description: These datasets can be used to test the performance of the taxonomic classification model deposited at https://zenodo.org/record/4306499 and trained using the data deposited at https://zenodo.org/record/4306240 with different patch sizes: 300 +- 10 bases 300 +- 25 bases 300 +- 50 bases Those are the same sequences as used in the test dataset mentioned above, but sampled at different lengths.
description: The authors acknowledge the financial support by the Federal Ministry of Education and Research of Germany (BMBF) in the project deep.Health (project number 13FH770IX6).
DOI: 10.21258/1422110
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 891889
DOI: 10.21258/1384323
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 897684
DOI: 10.21258/1423486
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 892829
DOI: 10.21258/1421862
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 892958
DOI: 10.21258/1384366
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 897854
DOI: 10.5281/zenodo.4299220
title: elebra-data: competição eleitoral interpartidária

description: Conjunto de bases de dados em diversos formatos com os resultados dos cômputos de uma série de <strong>índices de competição entre partidos</strong> para os resultados das eleições brasileiras.
description: Bases de dados relativas ao primeiro turno das eleições municipais brasileiras.
DOI: 10.5281/zenodo.4299219
title: elebra-data: competição eleitoral interpartidária

description: Conjunto de bases de dados em diversos formatos com os resultados dos cômputos de uma série de <strong>índices de competição entre partidos</strong> para os resultados das eleições brasileiras.
description: Bases de dados relativas ao primeiro turno das eleições municipais brasileiras.
DOI: 10.5281/zenodo.4299756
title: elebra-data: competição eleitoral intrapartidária

description: Conjunto de bases de dados em diversos formatos com os resultados dos cômputos de uma série de <strong>índices de competição dentro dos partidos</strong> para os resultados das eleições brasileiras.
description: Bases de dados relativas ao primeiro turno das eleições municipais brasileiras.
DOI: 10.5281/zenodo.4299755
title: elebra-data: competição eleitoral intrapartidária

description: Conjunto de bases de dados em diversos formatos com os resultados dos cômputos de uma série de <strong>índices de competição dentro dos partidos</strong> para os resultados das eleições brasileiras.
description: Bases de dados relativas ao primeiro turno das eleições municipais brasileiras.
DOI: 10.21258/1424587
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 892002
DOI: 10.21258/1419321
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 891793
DOI: 10.5281/zenodo.4304586
title: Anopheles gambiae (AgamP4) genome conservation score

description: The conservation score storage is a result of a bioinformatics pipeline that integrates a systematic analysis of the data on genetic variation in more than 1,000 wild-caught Anopheles gambiae individuals and conserved syntenic regions of 19 Anopheles species and 3 phylogenetically more distant species of dipterans. The results of this analysis are gathered in the HDF5 data storage system that allows for flexible extraction and bioinformatic manipulation at each genomic position in AgamP4 reference genome.
DOI: 10.5281/zenodo.3965754
title: Anopheles gambiae (AgamP4) genome conservation score

description: The conservation score storage is a result of a bioinformatics pipeline that integrates a systematic analysis of the data on genetic variation in more than 1,000 wild-caught Anopheles gambiae individuals and conserved syntenic regions of 19 Anopheles species and 3 phylogenetically more distant species of dipterans. The results of this analysis are gathered in the HDF5 data storage system that allows for flexible extraction and bioinformatic manipulation at each genomic position in AgamP4 reference genome.
DOI: 10.21258/1422994
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 891818
DOI: 10.21258/1424613
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 891962
DOI: 10.21258/1383837
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 899193
DOI: 10.21258/1422323
title: Schweizerisches Landesforstinventar - Ergebnistabelle Nr. 891829
DOI: 10.6084/m9.figshare.13337075
title: Dataset Exp 4 from Quality–quantity trade-off in the acquisition of token preference by capuchin monkeys (<i>Sapajus</i> spp.)

description: Money represents a cornerstone of human modern economies and how money emerged as a medium of exchange is a crucial question for social sciences. Although non-human primates have not developed monetary systems, they can estimate, combine and exchange tokens. Here, we evaluated quantity-quality trade-offs in token choices in tufted capuchin monkeys as a first step in the investigation of the generalizability of tokens as reinforcers, which is a potentially relevant factor underlying the emergence of money in humans. We measured capuchins' exchange preferences when they were repeatedly provided with 10 units of three token types yielding food combinations varying in quantity and quality. Overall, capuchins maximized their quantitative payoff, preferring tokens associated with a higher food amount, rather than showing violations of rationality. However, some individuals did not maximize their qualitative payoff, possibly because of conditional valuation effects or to the choice overload phenomenon, according to which too many options reduce the accuracy of choice. Our study supports the importance of comparative research to finely analyse the multiple components shaping the economic behaviours of other species, possibly to achieve a more comprehensive, evolutionary- and ecologically based understanding of human economic behaviour.This article is part of the theme issue ‘Existence and prevalence of economic behaviours among non-human primates’.
DOI: 10.6084/m9.figshare.13337075.v1
title: Dataset Exp 4 from Quality–quantity trade-off in the acquisition of token preference by capuchin monkeys (<i>Sapajus</i> spp.)

description: Money represents a cornerstone of human modern economies and how money emerged as a medium of exchange is a crucial question for social sciences. Although non-human primates have not developed monetary systems, they can estimate, combine and exchange tokens. Here, we evaluated quantity-quality trade-offs in token choices in tufted capuchin monkeys as a first step in the investigation of the generalizability of tokens as reinforcers, which is a potentially relevant factor underlying the emergence of money in humans. We measured capuchins' exchange preferences when they were repeatedly provided with 10 units of three token types yielding food combinations varying in quantity and quality. Overall, capuchins maximized their quantitative payoff, preferring tokens associated with a higher food amount, rather than showing violations of rationality. However, some individuals did not maximize their qualitative payoff, possibly because of conditional valuation effects or to the choice overload phenomenon, according to which too many options reduce the accuracy of choice. Our study supports the importance of comparative research to finely analyse the multiple components shaping the economic behaviours of other species, possibly to achieve a more comprehensive, evolutionary- and ecologically based understanding of human economic behaviour.This article is part of the theme issue ‘Existence and prevalence of economic behaviours among non-human primates’.
DOI: 10.6084/m9.figshare.13337087
title: Dataset Exp 1-2-3 from Quality–quantity trade-off in the acquisition of token preference by capuchin monkeys (<i>Sapajus</i> spp.)

description: Money represents a cornerstone of human modern economies and how money emerged as a medium of exchange is a crucial question for social sciences. Although non-human primates have not developed monetary systems, they can estimate, combine and exchange tokens. Here, we evaluated quantity-quality trade-offs in token choices in tufted capuchin monkeys as a first step in the investigation of the generalizability of tokens as reinforcers, which is a potentially relevant factor underlying the emergence of money in humans. We measured capuchins' exchange preferences when they were repeatedly provided with 10 units of three token types yielding food combinations varying in quantity and quality. Overall, capuchins maximized their quantitative payoff, preferring tokens associated with a higher food amount, rather than showing violations of rationality. However, some individuals did not maximize their qualitative payoff, possibly because of conditional valuation effects or to the choice overload phenomenon, according to which too many options reduce the accuracy of choice. Our study supports the importance of comparative research to finely analyse the multiple components shaping the economic behaviours of other species, possibly to achieve a more comprehensive, evolutionary- and ecologically based understanding of human economic behaviour.This article is part of the theme issue ‘Existence and prevalence of economic behaviours among non-human primates’.
DOI: 10.6084/m9.figshare.13337087.v1
title: Dataset Exp 1-2-3 from Quality–quantity trade-off in the acquisition of token preference by capuchin monkeys (<i>Sapajus</i> spp.)

description: Money represents a cornerstone of human modern economies and how money emerged as a medium of exchange is a crucial question for social sciences. Although non-human primates have not developed monetary systems, they can estimate, combine and exchange tokens. Here, we evaluated quantity-quality trade-offs in token choices in tufted capuchin monkeys as a first step in the investigation of the generalizability of tokens as reinforcers, which is a potentially relevant factor underlying the emergence of money in humans. We measured capuchins' exchange preferences when they were repeatedly provided with 10 units of three token types yielding food combinations varying in quantity and quality. Overall, capuchins maximized their quantitative payoff, preferring tokens associated with a higher food amount, rather than showing violations of rationality. However, some individuals did not maximize their qualitative payoff, possibly because of conditional valuation effects or to the choice overload phenomenon, according to which too many options reduce the accuracy of choice. Our study supports the importance of comparative research to finely analyse the multiple components shaping the economic behaviours of other species, possibly to achieve a more comprehensive, evolutionary- and ecologically based understanding of human economic behaviour.This article is part of the theme issue ‘Existence and prevalence of economic behaviours among non-human primates’.