DOI: 10.6084/m9.figshare.27174660
title: Data Associated with the manuscript entitled "Validating the genus <i>Pocheina</i> (Acrasidae, Heterolobosea, Excavata) leads to the recognition of three major lineages within Acrasidae."

description: The transcriptome assembly from Pocheina flagellata HUNT2 and untrimmed and trimmed SSU and ITS alignments. Pocheinaflagellata.HUNT2.RNAseq Pocheinaflagellata.HUNT2.RNAseq/Proteome Pocheinaflagellata.HUNT2.RNAseq/PochHUN2.fas Pocheinaflagellata.HUNT2.RNAseq/TrinityAssembly Pocheinaflagellata.HUNT2.RNAseq/PochHUN2.fas.Transdecoder Pocheinaflagellata.HUNT2.RNAseq/RAWdata Pocheinaflagellata.HUNT2.RNAseq/RAWdata/HI.3808.005.N719---S518.PochHUN2_R2.fastq.gz Pocheinaflagellata.HUNT2.RNAseq/RAWdata/HI.3808.005.N719---S518.PochHUN2_R1.fastq.gz Pocheinaflagellata.HUNT2.RNAseq/PochHUN2.fas.Transdecoder/PochHUN2.fas.transdecoder.cds Pocheinaflagellata.HUNT2.RNAseq/PochHUN2.fas.Transdecoder/PochHUN2.fas.transdecoder.pfam.dat Pocheinaflagellata.HUNT2.RNAseq/PochHUN2.fas.Transdecoder/PochHUN2.fas.transdecoder.gff3 Pocheinaflagellata.HUNT2.RNAseq/PochHUN2.fas.Transdecoder/PochHUN2.fas.transdecoder.bed Pocheinaflagellata.HUNT2.RNAseq/PochHUN2.fas.Transdecoder/PochHUN2.fas.transdecoder.pep Pocheinaflagellata.HUNT2.RNAseq/PochHUN2.fas.Transdecoder/PochHUN2.fas.transdecoder.mRNA Pocheinaflagellata.HUNT2.RNAseq/TrinityAssembly/PochHUN2_trinity_out.Trinity.fasta Pocheinaflagellata.HUNT2.RNAseq/Proteome/PochHUN2.faaSSU_and_ITS.Fig2-3-4-S1 SSU_and_ITS.Fig2-3-4-S1/Allo.ITS SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU58S SSU_and_ITS.Fig2-3-4-S1/All.58S SSU_and_ITS.Fig2-3-4-S1/pdistances SSU_and_ITS.Fig2-3-4-S1/All.SSU SSU_and_ITS.Fig2-3-4-S1/All.SSU.fas SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU SSU_and_ITS.Fig2-3-4-S1/All.ITS.fas SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU/Trees SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU/Alignment-Untrimmed SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU/Alignment-Trimmed SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU/Alignment-Trimmed/Acrasidae.SSU.LINSI.BMGEg0.6.nexus SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU/Alignment-Untrimmed/Acrasidae.SSU.fas SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU/Trees/RAxML_bipartitions.Acrasidae.SSU.LINSI.BMGEg0.6.ML300BS1000.tre SSU_and_ITS.Fig2-3-4-S1/All.SSU SSU_and_ITS.Fig2-3-4-S1/All.SSU/Trees SSU_and_ITS.Fig2-3-4-S1/All.SSU/Alignment-Untrimmed SSU_and_ITS.Fig2-3-4-S1/All.SSU/Alignment-Trimmed SSU_and_ITS.Fig2-3-4-S1/All.SSU/Alignment-Trimmed SSU_and_ITS.Fig2-3-4-S1/All.SSU/Alignment-Trimmed/All.SSU.LINSI.BMGEg0.6.nexus SSU_and_ITS.Fig2-3-4-S1/All.SSU/Alignment-Trimmed/All.SSU.LINSI.BMGEg0.6.phy SSU_and_ITS.Fig2-3-4-S1/All.SSU/Alignment-Untrimmed/All.SSU.fas SSU_and_ITS.Fig2-3-4-S1/All.SSU/Trees/RAxML_bipartitions.All.SSU.LINSI.BMGEg0.6.ML300BS1000.tre SSU_and_ITS.Fig2-3-4-S1/All.SSU/Trees/All.SSU.LINSI.BMGEg0.6.nexus.con.tre SSU_and_ITS.Fig2-3-4-S1/pdistances/Pocheina.ITS.fas SSU_and_ITS.Fig2-3-4-S1/pdistances/Acrasidae.ITS1_ITS2.fas SSU_and_ITS.Fig2-3-4-S1/pdistances/TableS1.Acrasidae.ITS1_ITS2.pdist-diff.xlsx SSU_and_ITS.Fig2-3-4-S1/pdistances SSU_and_ITS.Fig2-3-4-S1/pdistances/pdistcalculator_differences.py SSU_and_ITS.Fig2-3-4-S1/pdistances/pdistcalculator_considergaps.py SSU_and_ITS.Fig2-3-4-S1/pdistances/pdistcalculator.py SSU_and_ITS.Fig2-3-4-S1/pdistances/length.py SSU_and_ITS.Fig2-3-4-S1/pdistances/Acrasidae.ITS1-nogaps.fas SSU_and_ITS.Fig2-3-4-S1/pdistances/Acrasidae.ITS1_ITS2.pdist.tsv SSU_and_ITS.Fig2-3-4-S1/pdistances/Acrasidae.ITS1_ITS2.pdist-diff.tsv SSU_and_ITS.Fig2-3-4-S1/pdistances/Acrasidae.ITS1.length SSU_and_ITS.Fig2-3-4-S1/pdistances/Acrasidae.ITS2.fas SSU_and_ITS.Fig2-3-4-S1/pdistances/Acrasidae.ITS1.fas SSU_and_ITS.Fig2-3-4-S1/pdistances/Acrasidae.ITS2-nogaps.fas SSU_and_ITS.Fig2-3-4-S1/pdistances/Acrasidae.ITS2.length SSU_and_ITS.Fig2-3-4-S1/All.58S SSU_and_ITS.Fig2-3-4-S1/All.58S/Trees SSU_and_ITS.Fig2-3-4-S1/All.58S/Alignment-Untrimmed SSU_and_ITS.Fig2-3-4-S1/All.58S/Aligment-Trimmed SSU_and_ITS.Fig2-3-4-S1/All.58S/Aligment-Trimmed/All.58S.fas SSU_and_ITS.Fig2-3-4-S1/All.58S/Aligment-Trimmed/All.58S.nexus SSU_and_ITS.Fig2-3-4-S1/All.58S/Alignment-Untrimmed/All.58S.fas SSU_and_ITS.Fig2-3-4-S1/All.58S/Trees/All.58S.nexus.con.tre SSU_and_ITS.Fig2-3-4-S1/All.58S/Trees/RAxML_bipartitions.All.58S.ML300BS1000.tre SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU58S SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU58S/Trees SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU58S/Alignment-Untrimmed SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU58S/Alignment-Trimmed SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU58S/Alignment-Trimmed SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU58S/Alignment-Trimmed/Acrasidae.SSU.LINSI.BMGEg0.6.nexus SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU58S/Alignment-Trimmed/Acrasidae.SSU58S.fas SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU58S/Alignment-Trimmed/Acrasidae.SSU58S.nexus SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU58S/Alignment-Untrimmed SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU58S/Alignment-Untrimmed/Acrasidae.SSU.fas SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU58S/Alignment-Untrimmed/All.58S.nexus SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU58S/Trees/Acrasidae.SSU58S.nexus.con.tre SSU_and_ITS.Fig2-3-4-S1/Acrasidae.SSU58S/Trees/RAxML_bipartitions.Acrasidae.SSU58S.ML300BS1000.tre SSU_and_ITS.Fig2-3-4-S1/Allo.ITS SSU_and_ITS.Fig2-3-4-S1/Allo.ITS/Trees SSU_and_ITS.Fig2-3-4-S1/Allo.ITS/Alignment-Untrimmed SSU_and_ITS.Fig2-3-4-S1/Allo.ITS/Alignment-Trimmed SSU_and_ITS.Fig2-3-4-S1/Allo.ITS/Alignment-Trimmed/Allo.ITS.LINSI.BMGEg0.6.phy SSU_and_ITS.Fig2-3-4-S1/Allo.ITS/Alignment-Trimmed/Allo.ITS.LINSI.BMGEg0.6.nexus SSU_and_ITS.Fig2-3-4-S1/Allo.ITS/Alignment-Untrimmed/Allo.ITS.fas SSU_and_ITS.Fig2-3-4-S1/Allo.ITS/Trees/RAxML_bipartitions.Allo.ITS.LINSI.BMGEg0.6.ML300BS1000.tre SSU_and_ITS.Fig2-3-4-S1/Allo.ITS/Trees/Allo.ITS.LINSI.BMGEg0.6.nexus.con.treSSU_introns.Fig5 SSU_introns.Fig5/Pocheina.IntronDetails.txt SSU_introns.Fig5/Pocheina.INTRON-MAP.pdf