cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.g4n13
title: Data from: Using automated digital recording systems as effective tools for the monitoring of birds and amphibians

description: There is a need to improve the quantity and quality of data in
 biodiversity monitoring projects. We compared an automated digital
 recording system (ADRS) with traditional methods (point-counts and
 transects) for the assessment of birds and amphibians. The ADRS proved to
 produce better quantity and quality of data. This new method has 3
 additional advantages: permanent record of a census, 24 h/d data
 collection and the possibility of automated species identification.
description: Site01-01<br>
 Site01-02<br> Site01-03<br> Site02-01<br>
 Site02-02<br> Site02-03<br> Site03-01<br>
 Site03-02<br> Site03-03<br> Site04-01<br>
 Site04-02<br> Site04-03<br> Site05-01<br>
 Site05-02 <br> Site05-03<br> Site06-01<br>
 Site06-02<br> Site06-03<br> Site07-01<br>
 Site07-02<br> Site07-03<br> Site08-01<br>
 Site08-02<br> Site08-03<br> Site09-01<br>
 Site09-02<br> Site09-03<br> Site10-01<br>
 Site10-02<br> Site10-03
DOI: 10.5281/zenodo.18222720
title: Data_set

description: data set for trust and explanation effects.
DOI: 10.5281/zenodo.18222721
title: Data_set

description: data set for trust and explanation effects.
DOI: 10.35079/hbm595.knmv.763
title: Visium (no probes) data from the uterus of a 30-year-old white female
DOI: 10.5061/dryad.kt8m4
title: Data from: IL-33 mediated iLC2 activation and neutrophil IL-5 production in the lung response after severe trauma: a reverse translation study from a human cohort to a mouse trauma model

description: Background: The immunosuppression and immune dysregulation that follows
 severe injury includes type 2 immune responses manifested by elevations in
 interleukin (IL) 4, IL5, and IL13 early after injury. We hypothesized that
 IL33, an alarmin released early after tissue injury and a known regulator
 of type 2 immunity, contributes to the early type 2 immune responses after
 systemic injury. Methods and findings: Blunt trauma patients admitted to
 the trauma intensive care unit of a level I trauma center were enrolled in
 an observational study that included frequent blood sampling. Dynamic
 changes in IL33 and soluble suppression of tumorigenicity 2 (sST2) levels
 were measured in the plasma and correlated with levels of the type 2
 cytokines and nosocomial infection. Based on the observations in humans,
 mechanistic experiments were designed in a mouse model of resuscitated
 hemorrhagic shock and tissue trauma (HS/T). These experiments utilized
 wild-type C57BL/6 mice, IL33-/- mice, B6.C3(Cg)-Rorasg/sg mice deficient
 in group 2 innate lymphoid cells (ILC2), and C57BL/6 wild-type mice
 treated with anti-IL5 antibody. Severely injured human blunt trauma
 patients (n = 472, average injury severity score [ISS] = 20.2) exhibited
 elevations in plasma IL33 levels upon admission and over time that
 correlated positively with increases in IL4, IL5, and IL13 (P &lt;
 0.0001). sST2 levels also increased after injury but in a delayed manner
 compared with IL33. The increases in IL33 and sST2 were significantly
 greater in patients that developed nosocomial infection and organ
 dysfunction than similarly injured patients that did not (P &lt;
 0.05). Mechanistic studies were carried out in a mouse model of HS/T that
 recapitulated the early increase in IL33 and delayed increase in sST2 in
 the plasma (P &lt; 0.005). These studies identified a pathway where
 IL33 induces ILC2 activation in the lung within hours of HS/T. ILC2 IL5
 up-regulation induces further IL5 expression by CXCR2+ lung neutrophils,
 culminating in early lung injury. The major limitations of this study are
 the descriptive nature of the human study component and the impact of the
 potential differences between human and mouse immune responses to
 polytrauma. Also, the studies performed did not permit us to make
 conclusions about the impact of IL33 on pulmonary function. Conclusions:
 These results suggest that IL33 may initiate early detrimental type 2
 immune responses after trauma through ILC2 regulation of neutrophil IL5
 production. This IL33–ILC2–IL5–neutrophil axis defines a novel regulatory
 role for ILC2 in acute lung injury that could be targeted in trauma
 patients prone to early lung dysfunction.
description: DATA REPOSITORY-IL33
 paperDataRepository-IL33.zip
DOI: 10.15468/dl.jq2z3v
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Lagenodelphis hosei"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000429-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.35079/hbm762.frkm.495
title: Visium (no probes) data from the uterus of a 30-year-old white female
DOI: 10.5061/dryad.581f3
title: Data from: Genomic signatures of geographic isolation and natural selection in coral reef fishes

description: The drivers of speciation remain among the most controversial topics in
 evolutionary biology. Initially, Darwin emphasized natural selection as a
 primary mechanism of speciation, but the architects of the modern
 synthesis largely abandoned that view in favour of divergence by
 geographic isolation. The balance between selection and isolation is still
 at the forefront of the evolutionary debate, especially for the
 world's tropical oceans where biodiversity is high, but isolating
 barriers are few. Here, we identify the drivers of speciation in Pacific
 reef fishes of the genus Acanthurus by comparative genome scans of two
 peripheral populations that split from a large Central-West Pacific
 lineage at roughly the same time. Mitochondrial sequences indicate that
 populations in the Hawaiian Archipelago and the Marquesas Islands became
 isolated approximately 0.5 Ma. The Hawaiian lineage is morphologically
 indistinguishable from the widespread Pacific form, but the Marquesan form
 is recognized as a distinct species that occupies an unusual tropical
 ecosystem characterized by upwelling, turbidity, temperature fluctuations,
 algal blooms and little coral cover. An analysis of 3737 SNPs reveals a
 strong signal of selection at the Marquesas, with 59 loci under disruptive
 selection including an opsin Rh2 locus. While both the Hawaiian and
 Marquesan populations indicate signals of drift, the former shows a weak
 signal of selection that is comparable with populations in the
 Central-West Pacific. This contrast between closely related lineages
 reveals one population diverging due primarily to geographic isolation and
 genetic drift, and the other achieving taxonomic species status under the
 influence of selection.
description: Processed Illumina reads
 for Acanthurus reversusDemultiplexed and
 quality filtered Illumina HiSeq2000 reads for all 9 Acanthurus reversus
 samples used in this study. These samples were used as input files for the
 Stacks denovo_map.pl pipeline.ARE_rawRAD_ME_2015.tar.gzProcessed Illumina reads for Acanthurus olivaceusDemultiplexed and quality filtered Illumina HiSeq 2000 reads for all 52 Acanthurus olivaceus samples used in this study. These samples were used as the input files for the Stacks denovo_map.pl pipeline.AOL_rawRAD_ME_2015.tar.gzAll Loci Structure FileAll_Loci_StructureFile.txtCytb AlignmentCytbAlignment.txtGpd2 AlignmentGpd2Alignment.txtLoci under balancing selection Structure FileLoci_under_balancing_selection_StructureFile.txtLoci under divergent selection Structure FileLoci_under_divergent_selection_StructureFile.txtNeutral loci Structure FileNeutral_loci _StructureFile .txtS7 AlignmentS7Alignment.txtSample databaseSample_database.xlsx
DOI: 10.5061/dryad.64c32m5
title: Data from: Sex-dependent differences in central artery hemodynamics in normal and fibulin-5 deficient mice: implications for ageing

description: Mouse models provide unique opportunities to study vascular disease, but
 they demand increased experimental and computational resolution. We
 describe a workflow for combining in vivo and in vitro biomechanical data
 to build mouse-specific computational models of the central vasculature
 including regional variations in biaxial wall stiffness, thickness and
 perivascular support. These fluid–solid interaction models are informed by
 micro-computed tomography imaging and in vivo ultrasound and pressure
 measurements, and include mouse-specific inflow and outflow boundary
 conditions. Hence, the model can capture three-dimensional unsteady flows
 and pulse wave characteristics. The utility of this
 experimental–computational approach is illustrated by comparing central
 artery biomechanics in adult wild-type and fibulin-5 deficient mice, a
 model of early vascular ageing. Findings are also examined as a function
 of sex. Computational results compare well with measurements and data
 available in the literature and suggest that pulse wave velocity, a
 spatially integrated measure of arterial stiffness, does not reflect well
 the presence of regional differences in stiffening, particularly those
 manifested in male versus female mice. Modelling results are also useful
 for comparing quantities that are difficult to measure or infer
 experimentally, including local pulse pressures at the renal arteries and
 characteristics of the peripheral vascular bed that may differ with
 disease.
description: Data_Cuomo_et_al_2018
DOI: 10.35079/hbm528.tbrc.788
title: Visium (no probes) data from the uterus of a 30-year-old white female
DOI: 10.5061/dryad.1j41m
title: Data from: Inordinate spinescence: taxonomic revision and microtomography of the Pheidole cervicornis species group (Hymenoptera, Formicidae)

description: The ant genus Pheidole—for all of its hyperdiversity and global
 ubiquity—is remarkably conservative with regard to morphological
 disparity. A striking exception to this constrained morphology is the
 spinescent morphotype, which has evolved multiple times across distantly
 related lineages of Indoaustralian Pheidole. The Pheidole cervicornis
 group contains perhaps the most extraordinary spinescent forms of all
 Pheidole. Here we present a taxonomic revision of the P. cervicornis
 group, and use microtomographic scanning technology to investigate the
 internal anatomy of the thoracic spines. Our findings suggest the pronotal
 spines of Pheidole majors, are possibly skeletomuscular adaptations for
 supporting their disproportionately large heads. The ‘head support
 hypothesis’ is an alternative to the mechanical defense hypothesis most
 often used to explain spinescence in ants. The P. cervicornis group is
 known only from New Guinea and is represented by the following four
 species, including two described here as new: P. barumtaun Donisthorpe, P.
 drogon sp. nov., P. cervicornis Emery, and P. viserion sp. nov. The group
 is most readily identified by the minor worker caste, which has extremely
 long pronotal spines and strongly bifurcating propodeal spines. The major
 and minor workers of all species are illustrated with specimen
 photographs, with the exception of the major worker of P. cervicornis,
 which is not known.
description: CASENT0709598 (dicom
 files)Original X-ray micro-CT
 scan data for Pheidole barumtaun major worker
 (CASENT0709598)I0001.zipCASENT0282330 (dicom files)Original X-ray micro-CT scan data for Pheidole cervicornis minor worker (CASENT0282330)I0001.zipCASENT0716380 (dicom files)Original X-ray micro-CT scan data for Pheidole drogon major worker (CASENT0716380)I0003.zipCASENT0753009 (dicom files)Original X-ray micro-CT scan data for Pheidole drogon minor worker (CASENT0753009)I0004.zipCASENT0219462 (dicom files)Original X-ray micro-CT scan data for Pheidole viserion major worker (CASENT0219462)DICOMDIR.zipCASENT0282331 (dicom files)Original X-ray micro-CT scan data for Pheidole viserion minor worker (CASENT0282331)I0006.zipCASENT0741213 (dicom files)Original X-ray micro-CT scan data for Pheidole barumtaun minor worker (CASENT0741213)I0001.zip
DOI: 10.5281/zenodo.18380886
title: Open Data for Assessment of Electrophoretic Mobility Determination in Nanoparticle Analysis: Two Parallel Techniques Converging in a Distinctive Parameter
DOI: 10.5281/zenodo.18380885
title: Open Data for Assessment of Electrophoretic Mobility Determination in Nanoparticle Analysis: Two Parallel Techniques Converging in a Distinctive Parameter
DOI: 10.35079/hbm767.xgjm.524
title: Visium (no probes) data from the uterus of a 30-year-old white female
DOI: 10.5061/dryad.pc537
title: Data from: Empirical studies on the network of social groups: the case of Tencent QQ

description: Background: Participation in social groups are important but the
 collective behaviors of human as a group are difficult to analyze due to
 the difficulties to quantify ordinary social relation, group membership,
 and to collect a comprehensive dataset. Such difficulties can be
 circumvented by analyzing online social networks. Methodology/Principal
 Findings: In this paper, we analyze a comprehensive dataset released from
 Tencent QQ, an instant messenger with the highest market share in China.
 Specifically, we analyze three derivative networks involving groups and
 their members—the hypergraph of groups, the network of groups and the user
 network—to reveal social interactions at microscopic and mesoscopic level.
 Conclusions/Significance: Our results uncover interesting behaviors on the
 growth of user groups, the interactions between groups, and their
 relationship with member age and gender. These findings lead to insights
 which are difficult to obtain in social networks based on personal
 contacts.
description: Dataset of QQ group
 social networkParticipation in social
 groups are important but the collective behaviors of human as a group are
 difficult to analyze due to the difficulties to quantify ordinary social
 relation, group membership, and to collect a comprehensive dataset. Such
 difficulties can be circumvented by analyzing online social networks. In
 this paper, we analyze a comprehensive dataset obtained from Tencent QQ,
 an instant messenger with the highest market share in China. Specifically,
 we analyze three derivative networks involving groups and their members {
 the hypergraph of groups, the network of groups and the user network { to
 reveal social interactions at microscopic and mesoscopic level. Our
 results uncover interesting behaviors on the growth of user groups, the
 interactions between groups, and their relationship with member age and
 gender. These findings lead to insights which are difficult to obtain in
 social networks based on personal contacts.replace_Dataset_of_QQ_group_social_network.rar
DOI: 10.15468/dl.ffvx5v
title: Occurrence Download

description: A dataset containing 33535 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "GadmGid is one of (USA.45.13_1, USA.45.9_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 33535 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000430-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.35079/hbm756.vkcq.773
title: Visium (no probes) data from the uterus of a 30-year-old white female
DOI: 10.5061/dryad.78r91
title: Data from: Fine-grain, large-domain climate models based on climate station and comprehensive topographic information improve microrefugia detection

description: Large-domain species distribution models (SDMs) fail to identify
 microrefugia, as they are based on climate estimates that are either too
 coarse or that ignore relevant topographic climate-forcing factors.
 Climate station data are considered inadequate to produce such estimates,
 a viewpoint we challenge here. Using climate stations and topographic
 data, we developed three sets of large-domain (450,000 km²), fine-grain
 (50 m) temperature grids accounting for different levels of topographic
 complexity. Using these fine-grain grids and the Worldclim data, we fitted
 SDMs for 78 alpine species over Sweden, and assessed over- versus
 underestimations of local extinction and area of microrefugia by comparing
 modelled distributions at species' rear edges. Accounting for
 well-known topographic climate-forcing factors improved our ability to
 model fine-scale climate, despite using only climate station data. This
 approach captured the effect of cool air pooling, distance to sea, and
 relative humidity on local-scale temperature, but the effect of solar
 radiation could not be accurately accounted for. Predicted extinction rate
 decreased with increasing spatial resolution of the climate models and
 with increasing number of topographic climate-forcing factors accounted
 for. About half of the microrefugia detected in the most topographically
 complete models were not detected in the coarser SDMs and in the models
 calibrated from climate variables extracted from elevation only. Although
 major limitations remain, climate station data can potentially be used to
 produce fine-grain topoclimate grids, opening up the opportunity to model
 local-scale ecological processes over large domains. Accounting for the
 topographic complexity encountered within landscapes permits the detection
 of microrefugia that would otherwise remain undetected. Topographic
 heterogeneity is likely to have a massive impact on species persistence,
 and should be included in studies on the effects of climate change.
description: Climate
 grids_GEOTIFFHigh resolution (50 m)
 raster maps (format GEOTIFF) of 15 climate variables over Sweden for the
 time period 2000-2010GEOTIFF_Climate_grids.zipClimate grids_R formatHigh resolution (50 m) raster maps (format: R multi-layer grid) of 15 climate variables over Sweden for the time period 2000-2010R_Climate_grids.zip
DOI: 10.35079/hbm523.bzkl.454
title: Visium (no probes) data from the ovary (left) of a 19-year-old white female
DOI: 10.5061/dryad.5h06vv2
title: Data from: A convolutional neural network for detecting sea turtles in drone imagery

description: 1. Marine megafauna are difficult to observe and count because many
 species travel widely and spend large amounts of time submerged. As such,
 management programs seeking to conserve these species are often hampered
 by limited information about population levels. 2. Unoccupied aircraft
 systems (UAS, aka drones) provide a potentially useful technique for
 assessing marine animal populations, but a central challenge lies in
 analyzing the vast amounts of data generated in the images or video
 acquired during each flight. Neural networks are emerging as a powerful
 tool for automating object detection across data domains and can be
 applied to UAS imagery to generate new population-level insights. To
 explore the utility of these emerging technologies in a challenging field
 setting, we used neural networks to enumerate olive ridley turtles
 (Lepidochelys olivacea) in drone images acquired during a mass-nesting
 event on the coast of Ostional, Costa Rica. 3. Results revealed
 substantial promise for this approach; specifically, our model detected 8%
 more turtles than manual counts while effectively reducing the manual
 validation burden from 2,971,554 to 44,822 image windows. Our detection
 pipeline was trained on a relatively small set of turtle examples (N=944),
 implying that this method can be easily bootstrapped for other
 applications, and is practical with real-world UAS datasets. 4. Our
 findings highlight the feasibility of combining UAS and neural networks to
 estimate population levels of diverse marine animals and suggest that the
 automation inherent in these techniques will soon permit monitoring over
 spatial and temporal scales that would previously have been impractical.
description: turtle_image_metadataThis file contains all turtle detections along with relevant metadata such as the image the detection is in, that image's file location, aircraft information, and precise turtle location in each image in both GPS and pixel locations. Also included are many validated false positives with the same metadata but a label of 0 instead of certain or positive turtle.duke_turtlesThis is the first subset of images for the paper. Image metadata as well as turtle locations can be found in turtle_image_metadata.csv.duke_turtles_r1This is the second subset of images for the paper. Image metadata as well as turtle locations can be found in turtle_image_metadata.csv.
DOI: 10.5061/dryad.j4567
title: Data from: Contributions of local speech encoding and functional connectivity to audio-visual speech perception

description: Seeing a speaker’s face enhances speech intelligibility in adverse
 environments. We investigated the underlying network mechanisms by
 quantifying local speech representations and directed connectivity in MEG
 data obtained while human participants listened to speech of varying
 acoustic SNR and visual context. During high acoustic SNR speech encoding
 by temporally entrained brain activity was strong in temporal and inferior
 frontal cortex, while during low SNR strong entrainment emerged in
 premotor and superior frontal cortex. These changes in local encoding were
 accompanied by changes in directed connectivity along the ventral stream
 and the auditory-premotor axis. Importantly, the behavioral benefit
 arising from seeing the speaker’s face was not predicted by changes in
 local encoding but rather by enhanced functional connectivity between
 temporal and inferior frontal cortex. Our results demonstrate a role of
 auditory-frontal interactions in visual speech representations and suggest
 that functional connectivity along the ventral pathway facilitates speech
 comprehension in multisensory environments.
description: Contributions of local
 speech encoding and functional connectivity to audio-visual speech
 perceptionSee
 README.pdfBLG_CK_Speech_2017.matBLG_CK_Speech_2017_README.pdf
DOI: 10.35079/hbm853.ktqz.382
title: Visium (no probes) data from the ovary (left) of a 19-year-old white female