cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23725/713y-6086
title: NWD453573.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD453573.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/74c3-yg18
title: NWD533734.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD533734.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/79h1-gm11
title: NWD533584.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD533584.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/7grc-5955
title: NWD602255.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD602255.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/7j2h-7w03
title: NWD838374.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD838374.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/8q2d-7942
title: NWD837983.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD837983.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/9dvw-h058
title: NWD601574.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD601574.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/9mjh-fp93
title: NWD454040.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD454040.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/9n6f-z512
title: NWD759318.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD759318.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/9q7x-rj44
title: NWD838276.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD838276.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/9rky-rt03
title: NWD372207.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD372207.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/a3ev-tf56
title: NWD295259.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD295259.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/a8cf-kw10
title: NWD294656.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD294656.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/arqx-8b28
title: NWD601765.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD601765.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/bch0-fw21
title: NWD760149.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD760149.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/bhdx-gc13
title: NWD920973.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD920973.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/bkz9-jg08
title: NWD920895.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD920895.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.23725/bpa6-q329
title: NWD921127.freeze5.v1.vcf.gz.csi

description: TOPMed: NWD921127.freeze5.v1.vcf.gz.csi <br>File: VCF CSI file
DOI: 10.21227/78st-y656
title: MIRSat-QL

description: High-quality annotated datasets from diverse scenarios play a crucial role in the development of deep learning algorithms. However, due to the strict access limitations of space-based infrared satellite platforms, space-based infrared small target datasets are scarce. Therefore, we have developed the MIRSat-QL dataset, based on a space-based infrared satellite platform, for space-based dynamic scene infrared target detection. Our data is synthesized from space-based infrared satellite images and ground-based infrared cameras capturing airborne targets. The specifics are as follows。背景图像来自上海技术物理研究所 （SITP） 开发的 QLSAT-2 核心有效载荷，其中包括 QLSAT-2 高分辨率光学相机。QLSAT-2 长波红外 （LWIR） 相机在 14 公里的高度提供 500 米的地面分辨率。背景序列包含复杂的场景，例如城市区域、海洋表面、陆地和云。运动目标图像由中波红外 （MWIR） 相机捕获，该相机记录飞机等机载目标，形成用于航空观测的红外运动目标数据集。对数据集进行注释以获得目标掩码。然后将掩码图像和背景图像融合以生成新的图像序列。具体来说，我们首先对掩码图像应用高斯平滑以柔化目标边缘，确保背景和目标之间更平滑的过渡。接下来，我们根据目标区域的像素强度对背景图像和掩码进行加权处理。在非目标区域中，背景被完全显示，而在目标区域中，像素强度被控制以调整目标信噪比。背景加权完成后，目标区域和背景区域被合并以产生最终的融合图像。目标区域的像素通过平滑的蒙版图像直接添加到加权背景图像中，确保两者之间自然平滑的过渡。
DOI: 10.7284/114506
title: Fluorometer data collected during research cruise AT26-05 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7711028
title: Influence of the moisture content on the dynamic modulus of elasticity of concrete made with recycled aggregate

description: Abstract The elastic behavior of the concrete is estimated from its strength or determined by static or dynamic tests. However, because the codes of practice do not standardize the internal moisture content of the concrete and disregard the use of recycled aggregates when proposing equations for the estimation of the modulus of elasticity, discrepancies between the values measured and estimated are frequent. The influence of the moisture content of concrete containing basaltic coarse aggregates and coarse recycled concrete aggregate in the dynamic modulus of elasticity is discussed in this paper. A basalt coarse aggregate and two recycled coarse aggregates where used. For each type of coarse aggregate, concrete with compression strength between 25 MPa and 55 MPa were produced. The dynamic modulus of elasticity of the saturated samples were determined and range from 26 GPa to 46 GPa. There is a significant difference in the value of the dynamic modulus of elasticity for dry concrete versus saturated concrete, also influenced by the type of aggregate. Estimations of the modulus of elasticity from the compressive strength equations proposed by the codes of practice must be improved considering its characteristics.
DOI: 10.6084/m9.figshare.7711031.v1
title: COMPETITIVENESS AND EFFICIENCY FOR THE RUBBER TREE PRODUCTION SYSTEM IN SOUTHERN BAHIA (BRAZIL) THROUGH BY THE POLICY ANALYSIS MATRIX (PAM)

description: ABSTRACT The objective of this survey was to analyze the competitiveness and economic efficiency of the rubber tree (Hevea brasiliensis) production system in the southern of Bahia, through by the Policy Analysis Matrix (PAM). The analysis was divided into four categories: profitability analysis; efficiency analysis; protection analysis; and net transfer of policies. The results it possible to affirm that rubber tree production system is a profitable and competitive activity, in the long term, from a private and social point of view. However, the results point out that producers are penalized for the presence of political measures, which focus on product price and productive inputs. In the sensitivity analysis, it was observed that the indicators are sensitive to the fluctuations in the exchange rate and the social income, thus the changes in the price of natural rubber have a strong impact on determining the competitiveness of this productive system.
DOI: 10.6084/m9.figshare.7711025
title: Nutrient intake and apparent digestibility coefficient of lambs fed with coffee husk in replacement of oat hay

description: ABSTRACT: This study aimed to evaluate the effects of replacing oat hay with coffee husk in the diet of lambs on the intake and apparent digestibility of dry matter (DM), organic matter (OM), crude protein (CP), ether extract (EE), non-fiber carbohydrate (NFC), neutral detergent fiber (NDF), and acid detergent fiber (ADF). The experimental design was 4×4 Latin square with four levels of replacement of oat hay with coffee husk (0, 7.5, 15, and 22.5%) with four individually housed Texel sheep. Intake and apparent digestibility coefficients were measured at four periods of 12 days. All orts and feces were collected, weighed, homogenized, and sampled. The use of coffee husk at up to 22.5% of the total DM in the diet of lambs improved the intake of nutrients. Except for NDF, no significant differences were observed for the apparent digestibility of other parameters (DM, OM, CP, EE, NFC, and the ADF). Coffee husk can be included at up to 22.5% of total dry matter in diets with 30% roughage and 70% concentrate, being a good alternative to reduce feed costs in lamb production.
DOI: 10.6084/m9.figshare.7711028.v1
title: Influence of the moisture content on the dynamic modulus of elasticity of concrete made with recycled aggregate

description: Abstract The elastic behavior of the concrete is estimated from its strength or determined by static or dynamic tests. However, because the codes of practice do not standardize the internal moisture content of the concrete and disregard the use of recycled aggregates when proposing equations for the estimation of the modulus of elasticity, discrepancies between the values measured and estimated are frequent. The influence of the moisture content of concrete containing basaltic coarse aggregates and coarse recycled concrete aggregate in the dynamic modulus of elasticity is discussed in this paper. A basalt coarse aggregate and two recycled coarse aggregates where used. For each type of coarse aggregate, concrete with compression strength between 25 MPa and 55 MPa were produced. The dynamic modulus of elasticity of the saturated samples were determined and range from 26 GPa to 46 GPa. There is a significant difference in the value of the dynamic modulus of elasticity for dry concrete versus saturated concrete, also influenced by the type of aggregate. Estimations of the modulus of elasticity from the compressive strength equations proposed by the codes of practice must be improved considering its characteristics.
DOI: 10.7284/112051
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT26-05 using a C&C C-Nav 2050G instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7711025.v1
title: Nutrient intake and apparent digestibility coefficient of lambs fed with coffee husk in replacement of oat hay

description: ABSTRACT: This study aimed to evaluate the effects of replacing oat hay with coffee husk in the diet of lambs on the intake and apparent digestibility of dry matter (DM), organic matter (OM), crude protein (CP), ether extract (EE), non-fiber carbohydrate (NFC), neutral detergent fiber (NDF), and acid detergent fiber (ADF). The experimental design was 4×4 Latin square with four levels of replacement of oat hay with coffee husk (0, 7.5, 15, and 22.5%) with four individually housed Texel sheep. Intake and apparent digestibility coefficients were measured at four periods of 12 days. All orts and feces were collected, weighed, homogenized, and sampled. The use of coffee husk at up to 22.5% of the total DM in the diet of lambs improved the intake of nutrients. Except for NDF, no significant differences were observed for the apparent digestibility of other parameters (DM, OM, CP, EE, NFC, and the ADF). Coffee husk can be included at up to 22.5% of total dry matter in diets with 30% roughage and 70% concentrate, being a good alternative to reduce feed costs in lamb production.
DOI: 10.6084/m9.figshare.7711013
title: Laryngeal and vocal alterations after thyroidectomy

description: Abstract Introduction: Dysphonia is a common symptom after thyroidectomy. Objective: To analyze the vocal symptoms, auditory-perceptual and acoustic vocal, videolaryngoscopy, the surgical procedures and histopathological findings in patients undergoing thyroidectomy. Methods: Prospective study. Patients submitted to thyroidectomy were evaluated as follows: anamnesis, laryngoscopy, and acoustic vocal assessments. Moments: pre-operative, 1st post (15 days), 2nd post (1 month), 3rd post (3 months), and 4th post (6 months). Results: Among the 151 patients (130 women; 21 men). Type of surgery: lobectomy + isthmectomy n = 40, total thyroidectomy n = 88, thyroidectomy + lymph node dissection n = 23. Vocal symptoms were reported by 42 patients in the 1st post (27.8%) decreasing to 7.2% after 6 months. In the acoustic analysis, f0 and APQ were decreased in women. Videolaryngoscopies showed that 144 patients (95.3%) had normal exams in the preoperative moment. Vocal fold palsies were diagnosed in 34 paralyzes at the 1st post, 32 recurrent laryngeal nerve (lobectomy + isthmectomy n = 6; total thyroidectomy n = 17; thyroidectomy + lymph node dissection n = 9) and 2 superior laryngeal nerve (lobectomy + isthmectomy n = 1; Total thyroidectomy + lymph node dissection n = 1). After 6 months, 10 patients persisted with paralysis of the recurrent laryngeal nerve (6.6%). Histopathology and correlation with vocal fold palsy: colloid nodular goiter (n = 76; palsy n = 13), thyroiditis (n = 8; palsy n = 0), and carcinoma (n = 67; palsy n = 21). Conclusion: Vocal symptoms, reported by 27.8% of the patients on the 1st post decreased to 7% in 6 months. In the acoustic analysis, f0 and APQ were decreased. Transient paralysis of the vocal folds secondary to recurrent and superior laryngeal nerve injury occurred in, respectively, 21% and 1.3% of the patients, decreasing to 6.6% and 0% after 6 months.
DOI: 10.6084/m9.figshare.7711004
title: FINANCIAL ANALYSIS OF ENRICHMENT MODEL USING TIMBER AND NON-TIMBER PRODUCTS OF SECONDARY REMNANTS IN THE ATLANTIC FOREST

description: ABSTRACT Socio-economic aspects can limit the expansion of ecological restoration. One alternative to address this question is the development of restoration models that generate income to farmers in addition to the benefits from conservation itself. We designed and implemented the initiative "Sustenta A Mata," a project developed by The Nature Conservancy and supported by the Brazilian Development Bank (BNDES), to generate economic and social benefits for the communities involved. This study aims to analyze the financial viability of the enrichment restoration initiative in forest remnants based on a 30 year projection. The project was implemented on 17 hectares of land that included timber and non-timber species with a focus on the Juçara Palm (Euterpe edulis Mart.) for the production of fruit. Estimated earnings come from both the production of timber and juçara fruits. We considered input, equipment and labor costs for implementation, maintenance, and harvesting. For the economic analysis we used the following criteria: Net Present Value (NPV); Return on Investment (ROI); Benefit/Cost Ratio (B/C), and Payback. From these indicators the following values were obtained as results: US$4,040.80 of NPV, 13 percent of ROI, 1.59 of B/C and a 13-year Payback. These positive results for the aforementioned indicators reveal that the use of the enrichment restoration initiatives utilized in this project may contribute to the economic viability of the endeavor, contributing to a greater sustainability in rural areas.
DOI: 10.6084/m9.figshare.7711007
title: EFFECT OF FIRE ON FLOWERING AND FRUITING OF ANACARDIUM HUMILE (ANACARDIACEAE) IN CERRADO STRICTO SENSU

description: ABSTRACT Knowledge about the effects of fire on sexual reproduction of Cerrado woody species is fundamental for elaborating public policies and management plans for its conservation. The present study evaluated the effect of a controlled burning on flowering and fruiting of Anacardium humile in an Cerrado stricto sensu environment, in Cavalcante, GO. An area with no fire records for five years was submitted to controlled burning in May 2016, used as the experimental area and its adjacent areas protected from fire as control area. In each area, 16 reproductive individuals were selected and their production of floral buds, flowers and fruits, followed up for 17 months. In 2016 the production of reproductive structures was higher in the control area, since the majority of individuals of the burned area invested in the recovery of vegetative structures (branches) damaged by fire. Only three individuals flowered in the burned area in 2016 and presented greater effort in the production of buds and flowers per panicle than the individuals in the control area, however, the fruit set was equal between the areas. One year after fire, the production of reproductive structures became equal between areas. The control area presented higher fruit production in 2017 in comparison to 2016, indicating a variable pattern in annual fruit production. The impact of fire on the reproductive structures of A. humile is greater in the same year of fire and its reproductive potential can be normalized in the subsequent year.
DOI: 10.6084/m9.figshare.7711010
title: Detection and clearance of a mosquito densovirus contaminant from laboratory stocks of Zika virus

description: BACKGROUND The Zika virus (ZIKV) epidemics that affected South America in 2016 raised several research questions and prompted an increase in studies in the field. The transient and low viraemia observed in the course of ZIKV infection is a challenge for viral isolation from patient serum, which leads to many laboratories around the world sharing viral strains for their studies. C6/36 cells derived from Aedes albopictus larvae are commonly used for arbovirus isolation from clinical samples and for the preparation of viral stocks. OBJECTIVES Here, we report the contamination of two widely used ZIKV strains by Brevidensovirus, here designated as mosquito densovirus (MDV). METHODS Molecular and immunological techniques were used to analyse the MDV contamination of ZIKV stocks. Also, virus passages in mammalian cell line and infecting susceptible mice were used to MDV clearance from ZIKV stocks. FINDINGS MDV contamination was confirmed by molecular and immunological techniques and likely originated from C6/36 cultures commonly used to grow viral stocks. We applied two protocols that successfully eliminated MDV contamination from ZIKV stocks, and these protocols can be widely applied in the field. As MDV does not infect vertebrate cells, we performed serial passages of contaminated stocks using a mammalian cell line and infecting susceptible mice prior to re-isolating ZIKV from the animals’ blood serum. MDV elimination was confirmed with immunostaining, polymerase chain reaction (PCR), and analysis of the mosquitoes that were allowed to feed on the infected mice. MAIN CONCLUSIONS Since the putative impact of viral contaminants in ZIKV strains generally used for research purposes is unknown, researchers working in the field must be aware of potential contaminants and test viral stocks to certify sample purity.
DOI: 10.7284/114600
title: Meteorological Station data collected during research cruise AT26-05 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7711004.v1
title: FINANCIAL ANALYSIS OF ENRICHMENT MODEL USING TIMBER AND NON-TIMBER PRODUCTS OF SECONDARY REMNANTS IN THE ATLANTIC FOREST

description: ABSTRACT Socio-economic aspects can limit the expansion of ecological restoration. One alternative to address this question is the development of restoration models that generate income to farmers in addition to the benefits from conservation itself. We designed and implemented the initiative "Sustenta A Mata," a project developed by The Nature Conservancy and supported by the Brazilian Development Bank (BNDES), to generate economic and social benefits for the communities involved. This study aims to analyze the financial viability of the enrichment restoration initiative in forest remnants based on a 30 year projection. The project was implemented on 17 hectares of land that included timber and non-timber species with a focus on the Juçara Palm (Euterpe edulis Mart.) for the production of fruit. Estimated earnings come from both the production of timber and juçara fruits. We considered input, equipment and labor costs for implementation, maintenance, and harvesting. For the economic analysis we used the following criteria: Net Present Value (NPV); Return on Investment (ROI); Benefit/Cost Ratio (B/C), and Payback. From these indicators the following values were obtained as results: US$4,040.80 of NPV, 13 percent of ROI, 1.59 of B/C and a 13-year Payback. These positive results for the aforementioned indicators reveal that the use of the enrichment restoration initiatives utilized in this project may contribute to the economic viability of the endeavor, contributing to a greater sustainability in rural areas.
DOI: 10.6084/m9.figshare.7711007.v1
title: EFFECT OF FIRE ON FLOWERING AND FRUITING OF ANACARDIUM HUMILE (ANACARDIACEAE) IN CERRADO STRICTO SENSU

description: ABSTRACT Knowledge about the effects of fire on sexual reproduction of Cerrado woody species is fundamental for elaborating public policies and management plans for its conservation. The present study evaluated the effect of a controlled burning on flowering and fruiting of Anacardium humile in an Cerrado stricto sensu environment, in Cavalcante, GO. An area with no fire records for five years was submitted to controlled burning in May 2016, used as the experimental area and its adjacent areas protected from fire as control area. In each area, 16 reproductive individuals were selected and their production of floral buds, flowers and fruits, followed up for 17 months. In 2016 the production of reproductive structures was higher in the control area, since the majority of individuals of the burned area invested in the recovery of vegetative structures (branches) damaged by fire. Only three individuals flowered in the burned area in 2016 and presented greater effort in the production of buds and flowers per panicle than the individuals in the control area, however, the fruit set was equal between the areas. One year after fire, the production of reproductive structures became equal between areas. The control area presented higher fruit production in 2017 in comparison to 2016, indicating a variable pattern in annual fruit production. The impact of fire on the reproductive structures of A. humile is greater in the same year of fire and its reproductive potential can be normalized in the subsequent year.
DOI: 10.6084/m9.figshare.7711010.v1
title: Detection and clearance of a mosquito densovirus contaminant from laboratory stocks of Zika virus

description: BACKGROUND The Zika virus (ZIKV) epidemics that affected South America in 2016 raised several research questions and prompted an increase in studies in the field. The transient and low viraemia observed in the course of ZIKV infection is a challenge for viral isolation from patient serum, which leads to many laboratories around the world sharing viral strains for their studies. C6/36 cells derived from Aedes albopictus larvae are commonly used for arbovirus isolation from clinical samples and for the preparation of viral stocks. OBJECTIVES Here, we report the contamination of two widely used ZIKV strains by Brevidensovirus, here designated as mosquito densovirus (MDV). METHODS Molecular and immunological techniques were used to analyse the MDV contamination of ZIKV stocks. Also, virus passages in mammalian cell line and infecting susceptible mice were used to MDV clearance from ZIKV stocks. FINDINGS MDV contamination was confirmed by molecular and immunological techniques and likely originated from C6/36 cultures commonly used to grow viral stocks. We applied two protocols that successfully eliminated MDV contamination from ZIKV stocks, and these protocols can be widely applied in the field. As MDV does not infect vertebrate cells, we performed serial passages of contaminated stocks using a mammalian cell line and infecting susceptible mice prior to re-isolating ZIKV from the animals’ blood serum. MDV elimination was confirmed with immunostaining, polymerase chain reaction (PCR), and analysis of the mosquitoes that were allowed to feed on the infected mice. MAIN CONCLUSIONS Since the putative impact of viral contaminants in ZIKV strains generally used for research purposes is unknown, researchers working in the field must be aware of potential contaminants and test viral stocks to certify sample purity.