cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.31myqi
title: Occurrence Download

description: A dataset containing 32274 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gambusia affinis (Baird & Girard, 1853)"
 ]
}

 The dataset includes 32274 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002440-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tjgzje
title: Occurrence Download

description: A dataset containing 1080 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Saccharum officinarum L.",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 1080 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000260-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y7d2g4
title: Occurrence Download

description: A dataset containing 176122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 2000-2020",
 "TaxonKey is Iris pseudacorus L."
 ]
}

 The dataset includes 176122 records from 650 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072355-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24948342
title: Proteomics results FigShare.xlsx

description: Raw data of proteomics on peripheral blood neutrophils from multiple sclerosis patients and healthy controls.
DOI: 10.15468/dl.fdvdpm
title: Occurrence Download

description: A dataset containing 13087 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Linepithema humile (Mayr, 1868)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13087 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032058-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rmooni
title: Occurrence Download

description: A dataset containing 3621 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kinosternon flavescens (Agassiz, 1857)"
 ]
}

 The dataset includes 3621 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002440-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24948342.v3
title: Proteomics results FigShare.xlsx

description: Raw data of proteomics on peripheral blood neutrophils from multiple sclerosis patients and healthy controls.
DOI: 10.15468/dl.a3kjhl
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum sisymbriifolium Lam.",
 "Country is Mexico",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000260-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.olw5nm
title: Occurrence Download

description: A dataset containing 947 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Canada",
 "Country is United States of America"
 ]
 },
 {
 "or" : [
 "Month is May",
 "Month is June",
 "Month is July",
 "Month is August"
 ]
 },
 "Year 2015-2015",
 "TaxonKey is Tachinidae"
 ]
}

 The dataset includes 947 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002440-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1mjn1f
title: Occurrence Download

description: A dataset containing 13575 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lonicera japonica Thunb."
 ]
}

 The dataset includes 13575 records from 320 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000260-180925134338326/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hzgcz8
title: Occurrence Download

description: A dataset containing 13759 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scytalopus fuscus Gould, 1837"
 ]
}

 The dataset includes 13759 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057074-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnfmzw
title: Occurrence Download

description: A dataset containing 245 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Ireland, United Kingdom of Great Britain and Northern Ireland, Svalbard and Jan Mayen, Norway, Sweden, Finland, Estonia, Latvia, Lithuania, Portugal, Spain, France, Germany, Belgium, Netherlands, Switzerland, Austria, Italy, Greece, Cyprus, Türkiye, Russian Federation, Belarus, Ukraine, Poland, Czechia, Hungary, Slovakia, Romania, Bulgaria, North Macedonia, Albania, Montenegro, Serbia, Kosovo, Bosnia and Herzegovina, Slovenia, Croatia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Piptatherum miliaceum E.Fourn., 1866"
 ]
}

 The dataset includes 245 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057075-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q1zlbg
title: Occurrence Download

description: A dataset containing 7259 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Herpestes auropunctatus (Hodgson, 1836)"
 ]
}

 The dataset includes 7259 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003684-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t27dm3
title: Occurrence Download

description: A dataset listing the 127 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-13.65814 29.11609,-13.66089 29.11309,-13.66026 29.11133,-13.65675 29.11079,-13.65643 29.11181,-13.65715 29.11587,-13.65814 29.11609))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 127 records were derived from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018157-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7mm5h
title: Occurrence Download

description: A dataset containing 358 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((85.16536 28.07168,85.36914 28.07168,85.36914 28.25255,85.16536 28.25255,85.16536 28.07168))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Insecta"
 ]
}

 The dataset includes 358 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018174-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11109403
title: Derived-ECVs for Case Studies (maps)

description: Climate maps (raster layers .tif) of derived-ecvs with a spatial resolution of 5.5 km (1 km for Azores) obtained by statistically downscaling a set of CMIP6 simulations for different IPCC climate scenarios (historical, SSP1-2.6, SSP2-4.5, SSP5-8.5) and time horizons (reference, short time-horizon, medium time-horizon, long time-horizon). Data are representative of specific climate normals (yearly averaged values) and created by RethinkAction.

We acknowledge the World Climate Research Programme, which, through its Working Group on Coupled Modelling, coordinated and promoted CMIP6. We thank the climate modeling groups for producing and making available their model output, the Earth System Grid Federation (ESGF) for archiving the data and providing access, and the multiple funding agencies who support CMIP6 and ESGF.

Moreover, we acknowledge the Copernicus Climate Change Service (C3S) Climate Data Store (CDS) to provide access to CMIP6, CERRA, ERA5 and ERA5-Land data:



Copernicus Climate Change Service, Climate Data Store, (2021): CMIP6 climate projections. Copernicus Climate Change Service (C3S) Climate Data Store (CDS). DOI: 10.24381/cds.c866074c.

Schimanke S., Ridal M., Le Moigne P., Berggren L., Undén P., Randriamampianina R., Andrea U., Bazile E., Bertelsen A., Brousseau P., Dahlgren P., Edvinsson L., El Said A., Glinton M., Hopsch S., Isaksson L., Mladek R., Olsson E., Verrelle A., Wang Z.Q., (2021): CERRA sub-daily regional reanalysis data for Europe on single levels from 1984 to present. Copernicus Climate Change Service (C3S) Climate Data Store (CDS), DOI: 10.24381/cds.622a565a

Hersbach, H., Bell, B., Berrisford, P., Biavati, G., Horányi, A., Muñoz Sabater, J., Nicolas, J., Peubey, C., Radu, R., Rozum, I., Schepers, D., Simmons, A., Soci, C., Dee, D.,Thépaut, J-N. (2023): ERA5 hourly data on single levels from 1940 to present. Copernicus Climate Change Service (C3S) Climate Data Store (CDS), DOI: 10.24381/cds.adbb2d47

Muñoz Sabater, J. (2019): ERA5-Land hourly data from 1950 to present. Copernicus Climate Change Service (C3S) Climate Data Store (CDS). DOI: 10.24381/cds.e2161bac


Acknowledgement also to:



DRAAC, 2023, Regional climate data provided by the Regional Ditectorate for the Environment and Climate Change of the Regional Autonomous Government of Azores (https://portal.azores.gov.pt/en/web/draac)

SRAA\CCIAM, 2017. Programa Regional de Alterações Climáticas (PRAC), Secretaria Regional do Ambiente e Ação Climática (SRAA) of the Governo dos Açores, Climate Change Impacts, Adaptation and Modelling (CCIAM) of the Faculdade de Ciências da Universidade de Lisboa (FCUL), https://snig.dgterritorio.gov.pt/rndg/srv/por/catalog.search#/metadata/8804acd9-9d0f-40fb-bc2e-e4dff8c2b4b1


This v2 includes metadata.
DOI: 10.5281/zenodo.16738055
title: Derived-ECVs for Case Studies (maps)

description: Climate maps (raster layers .tif) of derived-ecvs with a spatial resolution of 5.5 km (1 km for Azores) obtained by statistically downscaling a set of CMIP6 simulations for different IPCC climate scenarios (historical, SSP1-2.6, SSP2-4.5, SSP5-8.5) and time horizons (reference, short time-horizon, medium time-horizon, long time-horizon). Data are representative of specific climate normals (yearly averaged values) and created by RethinkAction.

We acknowledge the World Climate Research Programme, which, through its Working Group on Coupled Modelling, coordinated and promoted CMIP6. We thank the climate modeling groups for producing and making available their model output, the Earth System Grid Federation (ESGF) for archiving the data and providing access, and the multiple funding agencies who support CMIP6 and ESGF.

Moreover, we acknowledge the Copernicus Climate Change Service (C3S) Climate Data Store (CDS) to provide access to CMIP6, CERRA, ERA5 and ERA5-Land data:



Copernicus Climate Change Service, Climate Data Store, (2021): CMIP6 climate projections. Copernicus Climate Change Service (C3S) Climate Data Store (CDS). DOI: 10.24381/cds.c866074c.

Schimanke S., Ridal M., Le Moigne P., Berggren L., Undén P., Randriamampianina R., Andrea U., Bazile E., Bertelsen A., Brousseau P., Dahlgren P., Edvinsson L., El Said A., Glinton M., Hopsch S., Isaksson L., Mladek R., Olsson E., Verrelle A., Wang Z.Q., (2021): CERRA sub-daily regional reanalysis data for Europe on single levels from 1984 to present. Copernicus Climate Change Service (C3S) Climate Data Store (CDS), DOI: 10.24381/cds.622a565a

Hersbach, H., Bell, B., Berrisford, P., Biavati, G., Horányi, A., Muñoz Sabater, J., Nicolas, J., Peubey, C., Radu, R., Rozum, I., Schepers, D., Simmons, A., Soci, C., Dee, D.,Thépaut, J-N. (2023): ERA5 hourly data on single levels from 1940 to present. Copernicus Climate Change Service (C3S) Climate Data Store (CDS), DOI: 10.24381/cds.adbb2d47

Muñoz Sabater, J. (2019): ERA5-Land hourly data from 1950 to present. Copernicus Climate Change Service (C3S) Climate Data Store (CDS). DOI: 10.24381/cds.e2161bac


Acknowledgement also to:



DRAAC, 2023, Regional climate data provided by the Regional Ditectorate for the Environment and Climate Change of the Regional Autonomous Government of Azores (https://portal.azores.gov.pt/en/web/draac)

SRAA\CCIAM, 2017. Programa Regional de Alterações Climáticas (PRAC), Secretaria Regional do Ambiente e Ação Climática (SRAA) of the Governo dos Açores, Climate Change Impacts, Adaptation and Modelling (CCIAM) of the Faculdade de Ciências da Universidade de Lisboa (FCUL), https://snig.dgterritorio.gov.pt/rndg/srv/por/catalog.search#/metadata/8804acd9-9d0f-40fb-bc2e-e4dff8c2b4b1


This v2 includes metadata.
DOI: 10.15468/dl.rd4m4e
title: Occurrence Download

description: A dataset containing 512 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sesamia inferens"
 ]
}

 The dataset includes 512 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018175-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjq5aw
title: Occurrence Download

description: A dataset containing 782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Squalidus japonicus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 782 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018176-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r4656f
title: Occurrence Download

description: A dataset containing 156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leiosolenus aristatus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 156 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018177-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2xgqj
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fritillaria unibracteata"
 ]
}

 The dataset includes 84 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018179-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3cy7ta
title: Occurrence Download

description: A dataset containing 831 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lithophaga lithophaga",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 831 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018181-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.28351
title: Understanding and Preventing Gender-based Intimate Partner Violence among West African Immigrants of Washington State, USA. A Community-Based Participatory Research.
title: Understanding and Preventing Gender-based Intimate Partner Violence among West African Immigrants of Washington State, USA. A Community-Based Participatory Research.

description: Qualitative interviews and field notes, represented in a spreadsheet or tabular format. Study was a community based participatory research with the Washington West Africa center
description: Qualitative interviews and field notes, represented in a spreadsheet or tabular format. Study was a community based participatory research with the Washington West Africa center
DOI: 10.57760/sciencedb.28349
title: Real-time qPCR
title: Real-time qPCR

description: Total RNA from cells was obtained using the AxyPrep Multisource Total RNA Miniprep kit (Axygen Scientific, Union City, CA, USA) according to the instructions of the manufacturer. Oligo(dT) primers, 2 µg of total RNA and the Superscript II first-strand synthesis system (Invitrogen) were used to synthesize cDNA. Real-time quantitative PCR (qPCR) was performed using TaqMan assay reagent master mix (Applied Biosystems, Foster City, CA, USA); primers and probes (Assay on Demand mix) for human IFN-β and GAPDH (as endogenous control). Gene expression was determined using and Applied Biosystems 7300 real-time PCR system, all experiments were performed in triplicate, and quantification was done using the comparative threshold cycle (ΔCt) method, as described by the manufacturer (Applied Biosystems). The relative amount of IFN-β mRNA was obtained by normalization to the amount of mRNA of cellular GAPDH, as endogenous control.
description: Total RNA from cells was obtained using the AxyPrep Multisource Total RNA Miniprep kit (Axygen Scientific, Union City, CA, USA) according to the instructions of the manufacturer. Oligo(dT) primers, 2 µg of total RNA and the Superscript II first-strand synthesis system (Invitrogen) were used to synthesize cDNA. Real-time quantitative PCR (qPCR) was performed using TaqMan assay reagent master mix (Applied Biosystems, Foster City, CA, USA); primers and probes (Assay on Demand mix) for human IFN-β and GAPDH (as endogenous control). Gene expression was determined using and Applied Biosystems 7300 real-time PCR system, all experiments were performed in triplicate, and quantification was done using the comparative threshold cycle (ΔCt) method, as described by the manufacturer (Applied Biosystems). The relative amount of IFN-β mRNA was obtained by normalization to the amount of mRNA of cellular GAPDH, as endogenous control.
DOI: 10.57760/sciencedb.28348
title: Quantification of IRF3-SUMOylation
title: Quantification of IRF3-SUMOylation

description: To determine SUMOylation of IRF3 in Influenza A infected cells, Global Protein SUMOylation assay kit (Abcam) was used as described by the manufacturer. Briefly, A549 cells were mock-infected or infected with Influenza A/New Caledonia/20/99 (H1N1) or pdm A/H1N1 2009 viruses. Cells were harvested at 12, 16 and 24 hpi, cytoplasmic and nuclear extracts were isolated, as described above. Both subcellular fractions were incubated with the anti-IRF3 rabbit pAb (FL-425) (Santa Cruz Biotechnology, CA, USA) in 8-well assay microwell strips, and SUMO was measured with the anti-SUMO antibody included in the kit by colorimetry (OD measure at 450nm). Positive and negative controls included in the kit were used. To quantify SUMOylation of IRF3, the values from the negative control were subtracted from the values obtained for extracts from mock- infected or viral infected cells and were compared to the level of mock-infected cells. Then calculate percentage of SUMO conjugated using the following formula: Percentage of IRF3-SUMOylation intensity=                   [OD (infected sample - negative control)]                   ___________________________________   x 100                 [OD (Mock-infected sample – negative control)]  The error bars indicate the standard deviation of the duplicates of two independent measurements.
description: To determine SUMOylation of IRF3 in Influenza A infected cells, Global Protein SUMOylation assay kit (Abcam) was used as described by the manufacturer. Briefly, A549 cells were mock-infected or infected with Influenza A/New Caledonia/20/99 (H1N1) or pdm A/H1N1 2009 viruses. Cells were harvested at 12, 16 and 24 hpi, cytoplasmic and nuclear extracts were isolated, as described above. Both subcellular fractions were incubated with the anti-IRF3 rabbit pAb (FL-425) (Santa Cruz Biotechnology, CA, USA) in 8-well assay microwell strips, and SUMO was measured with the anti-SUMO antibody included in the kit by colorimetry (OD measure at 450nm). Positive and negative controls included in the kit were used. To quantify SUMOylation of IRF3, the values from the negative control were subtracted from the values obtained for extracts from mock- infected or viral infected cells and were compared to the level of mock-infected cells. Then calculate percentage of SUMO conjugated using the following formula: Percentage of IRF3-SUMOylation intensity=                   [OD (infected sample - negative control)]                   ___________________________________   x 100                 [OD (Mock-infected sample – negative control)]  The error bars indicate the standard deviation of the duplicates of two independent measurements.
DOI: 10.57760/sciencedb.28361
title: A scalable optoelectronic hybrid photonic Ising accelerator for large-scale 0-1 Knapsack problems solving
title: 适用于大规模0-1背包问题求解的可扩展的光电混合伊辛加速器

description: Calculating Hamiltonian of large-scale Ising models challenges classical computing frame, while Spatial photonic Ising Machine (SPIM), as one of the optoelectronic hybrid schemes, shows great accelerating performance. SPIM with multiple channels further expands its application to general problems with more than 1 rank. We use such accelerator to demonstrate ground-state search of large-scale Knapsack problem with 1600 spins, and get approximate solutions with accuracy of 91.9%, approaching that of computer simulation (93.58%), which proves its ability to accelerate the solution selecting progress in large-scale problems.
description: Calculating Hamiltonian of large-scale Ising models challenges classical computing frame, while Spatial photonic Ising Machine (SPIM), as one of the optoelectronic hybrid schemes, shows great accelerating performance. SPIM with multiple channels further expands its application to general problems with more than 1 rank. We use such accelerator to demonstrate ground-state search of large-scale Knapsack problem with 1600 spins, and get approximate solutions with accuracy of 91.9%, approaching that of computer simulation (93.58%), which proves its ability to accelerate the solution selecting progress in large-scale problems.
DOI: 10.15468/dl.k6tvsh
title: Occurrence Download

description: A dataset containing 5038 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "TaxonKey is Anacamptis fragrans"
 ]
}

 The dataset includes 5038 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018183-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.