cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hzbne3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rukia ruki",
 "Country is one of (Brunei Darussalam, Indonesia, Philippines, Timor-Leste, Singapore)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029160-250920141307145/datasets/export for details.
DOI: 10.5281/zenodo.15194427
title: Supplemental Confocal Laser Scanning Microscopy Data - An arbuscular mycorrhiza from the 407-million-year-old Windyfield chert identified through advanced fluorescence and Raman imaging (tif format)

description: These data are images obtained on  a 70-μm slice sample from the Windyfield Cherts Unit near Rhynie, Scotland (slide no. NMS G.2022.11.48.1, National Museum of Scotland, Edinburgh).

Data A - Confocal Z-stack of water-conducting cells of the vascular strand, scale bar 10 μm (Fig 1C)

Data B - Confocal Z-stack of H-branching in hyphal development, scale bar 10 μm (Fig.1D)

Data C - Confocal Z-stack of a hypha with pseudoseptum, scale bar 10 μm (Fig. 1E)

Data D - Confocal Z-stack of a fungal spore, scale bar 10 μm (Fig. 1G)

Data E - Confocal Z-stack of a spore, scale bar 10 μm (Fig. 1H)

Data F - Confocal Z-stack of a vesicle and branching hypha, scale bar 10 μm (Fig. 1I)

Data G - Confocal Z-stack of arbuscules, scale bar 10 μm (Fig.1K)

Data H - Z-stack showing relatively short average lifetime of autofluorescence of the arbuscules (blue/cyan) compared to areas of the plant devoid of fungal structures (green). (Fig.2A)

Data H1 - Z-stack of the short lifetime that represents the arbuscules only (Fig.2B)

Data H2 - Z-stack of the long lifetime representing plant-plus-arbuscules. (Fig.2C)
DOI: 10.5281/zenodo.15194428
title: Supplemental Confocal Laser Scanning Microscopy Data - An arbuscular mycorrhiza from the 407-million-year-old Windyfield chert identified through advanced fluorescence and Raman imaging (tif format)

description: These data are images obtained on  a 70-μm slice sample from the Windyfield Cherts Unit near Rhynie, Scotland (slide no. NMS G.2022.11.48.1, National Museum of Scotland, Edinburgh).

Data A - Confocal Z-stack of water-conducting cells of the vascular strand, scale bar 10 μm (Fig 1C)

Data B - Confocal Z-stack of H-branching in hyphal development, scale bar 10 μm (Fig.1D)

Data C - Confocal Z-stack of a hypha with pseudoseptum, scale bar 10 μm (Fig. 1E)

Data D - Confocal Z-stack of a fungal spore, scale bar 10 μm (Fig. 1G)

Data E - Confocal Z-stack of a spore, scale bar 10 μm (Fig. 1H)

Data F - Confocal Z-stack of a vesicle and branching hypha, scale bar 10 μm (Fig. 1I)

Data G - Confocal Z-stack of arbuscules, scale bar 10 μm (Fig.1K)

Data H - Z-stack showing relatively short average lifetime of autofluorescence of the arbuscules (blue/cyan) compared to areas of the plant devoid of fungal structures (green). (Fig.2A)

Data H1 - Z-stack of the short lifetime that represents the arbuscules only (Fig.2B)

Data H2 - Z-stack of the long lifetime representing plant-plus-arbuscules. (Fig.2C)
DOI: 10.5281/zenodo.17222985
title: TFActProfiler

description: This Zenodo record contains the outputs of TFActProfiler and the source datasets used to create it: ChIP-Atlas, CollecTRI, and CellOracle.

ChIP-Atlas: Zou,Z., Ohta,T. and Oki,S. (2024) ChIP-Atlas 3.0: a data-mining suite to explore chromosome architecture together with large-scale regulome data. Nucleic Acids Res., 52, W45–W53.

CollecTRI: Müller-Dott,S., Tsirvouli,E., Vazquez,M., Ramirez Flores,R.O., Badia-I-Mompel,P., Fallegger,R., Türei,D., Lægreid,A. and Saez-Rodriguez,J. (2023) Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities. Nucleic Acids Res., 51, 10934–10949.

CellOracle: Kamimoto,K., Stringa,B., Hoffmann,C.M., Jindal,K., Solnica-Krezel,L. and Morris,S.A. (2023) Dissecting cell identity via network inference and in silico gene perturbation. Nature, 614, 742–751.
DOI: 10.5281/zenodo.17222986
title: TFActProfiler

description: This Zenodo record contains the outputs of TFActProfiler and the source datasets used to create it: ChIP-Atlas, CollecTRI, and CellOracle.

ChIP-Atlas: Zou,Z., Ohta,T. and Oki,S. (2024) ChIP-Atlas 3.0: a data-mining suite to explore chromosome architecture together with large-scale regulome data. Nucleic Acids Res., 52, W45–W53.

CollecTRI: Müller-Dott,S., Tsirvouli,E., Vazquez,M., Ramirez Flores,R.O., Badia-I-Mompel,P., Fallegger,R., Türei,D., Lægreid,A. and Saez-Rodriguez,J. (2023) Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities. Nucleic Acids Res., 51, 10934–10949.

CellOracle: Kamimoto,K., Stringa,B., Hoffmann,C.M., Jindal,K., Solnica-Krezel,L. and Morris,S.A. (2023) Dissecting cell identity via network inference and in silico gene perturbation. Nature, 614, 742–751.
DOI: 10.5281/zenodo.17223043
title: Global groundwater dependent wetland dynamics affected by climate variability and groundwater exaction over the last recent decades

description: Dataset description

This dataset provides monthly estimates of groundwater dependent wetland area and presence at the global scale for the period 1979–2019. Wetland extent was derived from PCR-GLOBWB 2 model outputs of saturated area fraction, combined with GLOBGM water table depth simulations at 1 km spatial resolution. Groundwater dependence was determined by identifying wetland areas with shallow water table conditions consistent with ecological reliance on groundwater. Results were aggregated to biome–realm combinations defined by the World Wide Fund for Nature (WWF) terrestrial ecoregion framework, which consists of 14 terrestrial biomes and 8 biogeographic realms, excluding Antarctica.

Two complementary data products are provided:





Area product (Parquet format): Monthly area of groundwater dependent wetlands aggregated by WWF biome–realm unit, reported in square kilometres. The table includes fields for time (monthly timestamps from 1979–01 to 2019–12), biome and realm identifiers, and wetland area (gde_area_km2).




Presence product (NetCDF format): Monthly boolean presence of groundwaterdependent wetlands on a global 30 arc second grid. The variable wetGDE encodes wetland dependence as 1 (presence) and 0 (absence). Dimensions are latitude, longitude, and time (monthly 1979–01 to 2019–12), in WGS84 geographic coordinates.



Key features





Spatial resolution: 1 km (model input and aggregation), 30 arc second (presence grid)




Temporal resolution: Monthly




Time period: 1979–2019




Spatial units: WWF biome–realm combinations (excluding Antarctica)




Variables:





gde_area_km2 (float, km²), aggregated wetland area per biome–realm and month (Parquet)




wetGDE (byte, 0/1), presence or absence of groundwater dependent wetlands (NetCDF)





Both products are suitable for analyzing the spatial and temporal variability of groundwater dependent wetlands at regional to global scales, and for integration with ecological, hydrological, and climate data.
DOI: 10.5281/zenodo.17223044
title: Global groundwater dependent wetland dynamics affected by climate variability and groundwater exaction over the last recent decades

description: Dataset description

This dataset provides monthly estimates of groundwater dependent wetland area and presence at the global scale for the period 1979–2019. Wetland extent was derived from PCR-GLOBWB 2 model outputs of saturated area fraction, combined with GLOBGM water table depth simulations at 1 km spatial resolution. Groundwater dependence was determined by identifying wetland areas with shallow water table conditions consistent with ecological reliance on groundwater. Results were aggregated to biome–realm combinations defined by the World Wide Fund for Nature (WWF) terrestrial ecoregion framework, which consists of 14 terrestrial biomes and 8 biogeographic realms, excluding Antarctica.

Two complementary data products are provided:





Area product (Parquet format): Monthly area of groundwater dependent wetlands aggregated by WWF biome–realm unit, reported in square kilometres. The table includes fields for time (monthly timestamps from 1979–01 to 2019–12), biome and realm identifiers, and wetland area (gde_area_km2).




Presence product (NetCDF format): Monthly boolean presence of groundwaterdependent wetlands on a global 30 arc second grid. The variable wetGDE encodes wetland dependence as 1 (presence) and 0 (absence). Dimensions are latitude, longitude, and time (monthly 1979–01 to 2019–12), in WGS84 geographic coordinates.



Key features





Spatial resolution: 1 km (model input and aggregation), 30 arc second (presence grid)




Temporal resolution: Monthly




Time period: 1979–2019




Spatial units: WWF biome–realm combinations (excluding Antarctica)




Variables:





gde_area_km2 (float, km²), aggregated wetland area per biome–realm and month (Parquet)




wetGDE (byte, 0/1), presence or absence of groundwater dependent wetlands (NetCDF)





Both products are suitable for analyzing the spatial and temporal variability of groundwater dependent wetlands at regional to global scales, and for integration with ecological, hydrological, and climate data.
DOI: 10.15468/dl.dfvwb3
title: Occurrence Download

description: A dataset containing 63396 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The birds collection (ZO) of the Muséum national d'Histoire Naturelle (MNHN - Paris)"
 ]
}

 The dataset includes 63396 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029139-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r9qxg9
title: Occurrence Download

description: A dataset containing 1320735 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "GadmGid is FRA.12.1_1",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (1928bdf0-f5d2-11dc-8c12-b8a03c50a862, 2cd829bb-b713-433d-99cf-64bef11e5b3e)"
 ]
}

 The dataset includes 1320735 records from 809 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029137-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.grgnm5
title: Occurrence Download

description: A dataset containing 1561 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ommastrephes bartramii"
 ]
}

 The dataset includes 1561 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029163-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccszk5g
title: CCDC 744346: Experimental Crystal Structure Determination

description: Related Article: K.A.Ketuly, A.H.A.Hadi, S.W.Ng|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1822|doi:10.1107/S1600536809025987
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccszk6h
title: CCDC 744347: Experimental Crystal Structure Determination

description: Related Article: P.-C.Cheng, C.-J.Wu, H.-C.Chen, J.-D.Chen, J.-C.Wang|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1825|doi:10.1107/S1600536809026488
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccszk7j
title: CCDC 744348: Experimental Crystal Structure Determination

description: Related Article: H.D.Choi, P.J.Seo, B.W.Son, U.Lee|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1826|doi:10.1107/S1600536809025938
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccszk8k
title: CCDC 744349: Experimental Crystal Structure Determination

description: Related Article: B.T.Gowda, S.Foro, B.S.Saraswathi, H.Fuess|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1827|doi:10.1107/S160053680902649X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.28458.54721
title: Video S4: Turbulent flow at EMBr of 441 mT
DOI: 10.5517/ccszk9l
title: CCDC 744350: Experimental Crystal Structure Determination

description: Related Article: S.Puvaneswary, Y.Alias, S.W.Ng|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1828|doi:10.1107/S1600536809026324
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccszkbm
title: CCDC 744351: Experimental Crystal Structure Determination

description: Related Article: S.Puvaneswary, Y.Alias, S.W.Ng|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1829|doi:10.1107/S1600536809026312
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccszkcn
title: CCDC 744352: Experimental Crystal Structure Determination

description: Related Article: S.Puvaneswary, Y.Alias, S.W.Ng|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1830|doi:10.1107/S1600536809026336
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccszkdp
title: CCDC 744353: Experimental Crystal Structure Determination

description: Related Article: Ya-Wen Zhang, Jian-Quan Wang, Lin Cheng|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1831|doi:10.1107/S1600536809026403
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccszkfq
title: CCDC 744354: Experimental Crystal Structure Determination

description: Related Article: H.Wang, K.-B.Yu, L.-S.Ding, X.-D.Luo, X.-F.Zhang|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1832|doi:10.1107/S1600536809026002
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccszkgr
title: CCDC 744355: Experimental Crystal Structure Determination

description: Related Article: R.T.Boere, M.R.Hassan|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1833|doi:10.1107/S1600536809026348
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccszkhs
title: CCDC 744356: Experimental Crystal Structure Determination

description: Related Article: M.Arfan, M.N.Tahir, R.Khan, S.Saba, M.S.Iqbal|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1834|doi:10.1107/S1600536809026294
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.25040.84481
title: Caso de estudio de la metodología RCM - Equipo de separación Pera Lamort, del sistema de limpieza de OCC (old corrugated cardboard), en la planta PM3 de SKC.
DOI: 10.5517/ccszkjt
title: CCDC 744357: Experimental Crystal Structure Determination

description: Related Article: Shizhou Fu, Zengbin Wei, Xilian Wei, Tao Wu|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1836|doi:10.1107/S160053680902635X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.22262.11848
title: Chimeroma Technology
DOI: 10.5517/ccszkkv
title: CCDC 744358: Experimental Crystal Structure Determination

description: Related Article: Xiao-Ai Wu, Ping Yin, Ling He, Zi-Cheng Li, Wen-Cai Huang|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1837|doi:10.1107/S1600536809026452
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccszklw
title: CCDC 744359: Experimental Crystal Structure Determination

description: Related Article: Xiu-Mei Song, Zhao-Yang Li, Zhao-Yang Wang, Jian-Hua Fu|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1838|doi:10.1107/S1600536809026129
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccszkmx
title: CCDC 744360: Experimental Crystal Structure Determination

description: Related Article: L.Bendjeddou, S.Farah, A.Cherouana|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1839|doi:10.1107/S1600536809026427
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccszkny
title: CCDC 744361: Experimental Crystal Structure Determination

description: Related Article: Zhi-Hua Wang, Jian-Wu Shi, Sheng Zhu, Hua Wang|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1841|doi:10.1107/S1600536809026178
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccszkpz
title: CCDC 744362: Experimental Crystal Structure Determination

description: Related Article: Y.Bingol Alpaslan, H.Tanak, E.Agar, F.Ersahin|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1842|doi:10.1107/S1600536809026191
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccszkr1
title: CCDC 744364: Experimental Crystal Structure Determination

description: Related Article: Xiao-Ru Pan, Fang-Fang Jian|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1844|doi:10.1107/S1600536809025677
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccszks2
title: CCDC 744365: Experimental Crystal Structure Determination

description: Related Article: A.Saeed, J.Simpson|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1845|doi:10.1107/S1600536809024271
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccszkt3
title: CCDC 744366: Experimental Crystal Structure Determination

description: Related Article: Kaozhen Li, Jing Jiao, Yong Wang, Guo-Dong Wei, Daqi Wang|2009|Acta Crystallogr.,Sect.E:Struct.Rep.Online|65|o1846|doi:10.1107/S1600536809026014
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.