cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18692352
title: Linked collectors and determiners for: Discovery of the bee genus Perdita in the West Indies (Hymenoptera: Andrenidae): a new species from Isla Cabritos in the Dominican Republic.

description: Natural history specimen data linked to collectors and determiners held within, "Discovery of the bee genus Perdita in the West Indies (Hymenoptera: Andrenidae): a new species from Isla Cabritos in the Dominican Republic". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2eac2bd6-7aaa-4d9d-a751-8b498817e899 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2eac2bd6-7aaa-4d9d-a751-8b498817e899. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10506524
title: Linked collectors and determiners for: Discovery of the bee genus Perdita in the West Indies (Hymenoptera: Andrenidae): a new species from Isla Cabritos in the Dominican Republic.

description: Natural history specimen data linked to collectors and determiners held within, "Discovery of the bee genus Perdita in the West Indies (Hymenoptera: Andrenidae): a new species from Isla Cabritos in the Dominican Republic". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2eac2bd6-7aaa-4d9d-a751-8b498817e899 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2eac2bd6-7aaa-4d9d-a751-8b498817e899. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18668580
title: Tumor ROIs for: Comprehensive evaluation of cross-cancer generalization in histopathology segmentation models across 21 tumor types

description: This dataset accompanies the paper "Comprehensive evaluation of cross-cancer generalization in histopathology segmentation models across 21 tumor types."

It contains 7,616 tumor tissue regions of interest (ROIs) extracted from whole-slide images (WSIs) across 21 TCGA cancer types. Rectangular tumor regions were annotated in QuPath and exported as JPEG images. The original ROIs were extracted at native scanner resolution (varying across slides) and used at full size for the segmentation experiments described in the paper. For this deposit the images have been downsampled to a uniform resolution of 0.5 µm/px (approximately 20× equivalent magnification) to reduce the total dataset size while preserving sufficient detail for visual inspection and reuse. These ROIs served as the input for evaluating five organ-specific deep learning segmentation models (trained on breast, colon, lung, kidney, and prostate tissue).

Contents

The dataset is organized as 21 TAR archives, one per TCGA project:



TCGA-BLCA (445 ROIs), TCGA-BRCA (1,007), TCGA-CESC (276), TCGA-CHOL (38), TCGA-COADREAD (590), TCGA-ESCA (157), TCGA-HNSC (456), TCGA-KICH (109), TCGA-KIRC (512), TCGA-KIRP (282), TCGA-LIHC (372), TCGA-LUAD (379), TCGA-LUSC (301), TCGA-MESO (84), TCGA-OV (106), TCGA-PAAD (199), TCGA-PRAD (415), TCGA-SKCM (457), TCGA-STAD (374), TCGA-THCA (504), TCGA-UCEC (553)


Each archive extracts to a directory named after its TCGA project. Individual files follow the naming convention:

{TCGA-ID}_{mpp}_tumor_original.jpg



TCGA-ID — TCGA case and slide identifier

mpp — spatial resolution in microns per pixel (0.500)

tumor_original — indicates an unprocessed tumor tissue ROI


Related datasets



Evaluation data (scoring results, Dice coefficients, clinical metadata): 10.5281/zenodo.18518811

Code (annotation, inference, scoring, and analysis pipeline): 10.5281/zenodo.18520078

Segmentation masks (model prediction masks for all ROIs): 10.5281/zenodo.18669667
DOI: 10.5281/zenodo.18668579
title: Tumor ROIs for: Comprehensive evaluation of cross-cancer generalization in histopathology segmentation models across 21 tumor types

description: This dataset accompanies the paper "Comprehensive evaluation of cross-cancer generalization in histopathology segmentation models across 21 tumor types."

It contains 7,616 tumor tissue regions of interest (ROIs) extracted from whole-slide images (WSIs) across 21 TCGA cancer types. Rectangular tumor regions were annotated in QuPath and exported as JPEG images. The original ROIs were extracted at native scanner resolution (varying across slides) and used at full size for the segmentation experiments described in the paper. For this deposit the images have been downsampled to a uniform resolution of 0.5 µm/px (approximately 20× equivalent magnification) to reduce the total dataset size while preserving sufficient detail for visual inspection and reuse. These ROIs served as the input for evaluating five organ-specific deep learning segmentation models (trained on breast, colon, lung, kidney, and prostate tissue).

Contents

The dataset is organized as 21 TAR archives, one per TCGA project:



TCGA-BLCA (445 ROIs), TCGA-BRCA (1,007), TCGA-CESC (276), TCGA-CHOL (38), TCGA-COADREAD (590), TCGA-ESCA (157), TCGA-HNSC (456), TCGA-KICH (109), TCGA-KIRC (512), TCGA-KIRP (282), TCGA-LIHC (372), TCGA-LUAD (379), TCGA-LUSC (301), TCGA-MESO (84), TCGA-OV (106), TCGA-PAAD (199), TCGA-PRAD (415), TCGA-SKCM (457), TCGA-STAD (374), TCGA-THCA (504), TCGA-UCEC (553)


Each archive extracts to a directory named after its TCGA project. Individual files follow the naming convention:

{TCGA-ID}_{mpp}_tumor_original.jpg



TCGA-ID — TCGA case and slide identifier

mpp — spatial resolution in microns per pixel (0.500)

tumor_original — indicates an unprocessed tumor tissue ROI


Related datasets



Evaluation data (scoring results, Dice coefficients, clinical metadata): 10.5281/zenodo.18518811

Code (annotation, inference, scoring, and analysis pipeline): 10.5281/zenodo.18520078

Segmentation masks (model prediction masks for all ROIs): 10.5281/zenodo.18669667
DOI: 10.25549/rbm-c58-6665
title: Man in pelvis cloth lifting weights

description: Man in pelvis cloth lifting weights. This is plate 322, captioned "Lifting and letting down two 50-lb. dumbbells" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-6666
title: Man in pelvis cloth lifting weights

description: Man in pelvis cloth lifting weights. This is plate 322, captioned "Lifting and letting down two 50-lb. dumbbells" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-6667
title: Man in pelvis cloth lifting weights

description: Man in pelvis cloth lifting weights. This is plate 322, captioned "Lifting and letting down two 50-lb. dumbbells" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-6675
title: Man in pelvis cloth lifting weights

description: Man in pelvis cloth lifting weights. This is plate 322, captioned "Lifting and letting down two 50-lb. dumbbells" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-12584
title: Man in pelvis cloth positioning bayonet

description: Man in pelvis cloth positioning bayonet. This is plate 351, captioned "'Fix' and 'unfix bayonets'" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.5281/zenodo.10506526
title: Linked collectors and determiners for: MLZ Fish Collection (Arctos).

description: Natural history specimen data linked to collectors and determiners held within, "MLZ Fish Collection (Arctos)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/415cdd20-b2a4-45b1-8918-b6a4bf188ffe using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/415cdd20-b2a4-45b1-8918-b6a4bf188ffe. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18692357
title: Linked collectors and determiners for: MLZ Fish Collection (Arctos).

description: Natural history specimen data linked to collectors and determiners held within, "MLZ Fish Collection (Arctos)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/415cdd20-b2a4-45b1-8918-b6a4bf188ffe using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/415cdd20-b2a4-45b1-8918-b6a4bf188ffe. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18692358
title: Linked collectors and determiners for: The structure of the cataract causing P 23 T mutant of human gamma-D crystallin.

description: Natural history specimen data linked to collectors and determiners held within, "The structure of the cataract causing P 23 T mutant of human gamma-D crystallin". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/4caaf0c8-bd51-4d80-86ba-5544792d65ce using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/4caaf0c8-bd51-4d80-86ba-5544792d65ce. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10506530
title: Linked collectors and determiners for: The structure of the cataract causing P 23 T mutant of human gamma-D crystallin.

description: Natural history specimen data linked to collectors and determiners held within, "The structure of the cataract causing P 23 T mutant of human gamma-D crystallin". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/4caaf0c8-bd51-4d80-86ba-5544792d65ce using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/4caaf0c8-bd51-4d80-86ba-5544792d65ce. Formatted as a Frictionless Data package.
DOI: 10.25549/rbm-c58-12595
title: Man in pelvis cloth positioning bayonet

description: Man in pelvis cloth positioning bayonet. This is plate 351, captioned "'Fix' and 'unfix bayonets'" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-12589
title: Man in pelvis cloth positioning bayonet

description: Man in pelvis cloth positioning bayonet. This is plate 351, captioned "'Fix' and 'unfix bayonets'" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-12747
title: Man in pelvis cloth positioning bayonet

description: Man in pelvis cloth positioning bayonet. This is plate 352, captioned "'Shoulder' and 'carry arms'" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-12740
title: Man in pelvis cloth positioning bayonet

description: Man in pelvis cloth positioning bayonet. This is plate 352, captioned "'Shoulder' and 'carry arms'" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-6716
title: Man in pelvis cloth lifting weights

description: Man in pelvis cloth lifting weights. This is plate 323, captioned "Lifting and letting down two 50-lb. dumbbells" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-6718
title: Man in pelvis cloth lifting weights

description: Man in pelvis cloth lifting weights. This is plate 323, captioned "Lifting and letting down two 50-lb. dumbbells" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-6728
title: Man in pelvis cloth lifting weights

description: Man in pelvis cloth lifting weights. This is plate 323, captioned "Lifting and letting down two 50-lb. dumbbells" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-6720
title: Man in pelvis cloth lifting weights

description: Man in pelvis cloth lifting weights. This is plate 323, captioned "Lifting and letting down two 50-lb. dumbbells" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-6722
title: Man in pelvis cloth lifting weights

description: Man in pelvis cloth lifting weights. This is plate 323, captioned "Lifting and letting down two 50-lb. dumbbells" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-21014
title: Two nude blacksmiths hammering on anvil

description: Two nude blacksmiths hammering on anvil. This is plate 377, captioned "Two blacksmiths, hammering on anvil" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-13407
title: Man in pelvis cloth hammering an anvil

description: Man in pelvis cloth hammering an anvil. This is plate 378 captioned "Blacksmith, hammering on anvil with two hands" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-13416
title: Man in pelvis cloth hammering an anvil

description: Man in pelvis cloth hammering an anvil. This is plate 378 captioned "Blacksmith, hammering on anvil with two hands" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.5281/zenodo.10506532
title: Linked collectors and determiners for: Alien plants of Kyrgyzstan.

description: Natural history specimen data linked to collectors and determiners held within, "Alien plants of Kyrgyzstan". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/5b2a5f78-87b9-4880-aa5b-8a8618fe9a1a using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/5b2a5f78-87b9-4880-aa5b-8a8618fe9a1a. Formatted as a Frictionless Data package.
DOI: 10.25549/rbm-c58-13417
title: Man in pelvis cloth hammering an anvil

description: Man in pelvis cloth hammering an anvil. This is plate 378 captioned "Blacksmith, hammering on anvil with two hands" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-13427
title: Man in pelvis cloth hammering an anvil

description: Man in pelvis cloth hammering an anvil. This is plate 378 captioned "Blacksmith, hammering on anvil with two hands" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.5281/zenodo.18692365
title: Linked collectors and determiners for: Ocean Genome Legacy Collection.

description: Natural history specimen data linked to collectors and determiners held within, "Ocean Genome Legacy Collection". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/968dfa3e-3614-4bab-a3b5-e9209bdd6078 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/968dfa3e-3614-4bab-a3b5-e9209bdd6078. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10506538
title: Linked collectors and determiners for: Ocean Genome Legacy Collection.

description: Natural history specimen data linked to collectors and determiners held within, "Ocean Genome Legacy Collection". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/968dfa3e-3614-4bab-a3b5-e9209bdd6078 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/968dfa3e-3614-4bab-a3b5-e9209bdd6078. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18692366
title: Linked collectors and determiners for: Texas Tech University, E. L. Reed Herbarium.

description: Natural history specimen data linked to collectors and determiners held within, "Texas Tech University, E. L. Reed Herbarium". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/a6f37a35-cb18-4395-9a0c-5be222c8e6c8 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/a6f37a35-cb18-4395-9a0c-5be222c8e6c8. Formatted as a Frictionless Data package.
DOI: 10.25549/rbm-c58-6927
title: Man in pelvis cloth lifting weights

description: Man in pelvis cloth lifting weights. This is plate 324, captioned "Curling a 50-lb. dumbbell" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.5281/zenodo.10506540
title: Linked collectors and determiners for: Texas Tech University, E. L. Reed Herbarium.

description: Natural history specimen data linked to collectors and determiners held within, "Texas Tech University, E. L. Reed Herbarium". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/a6f37a35-cb18-4395-9a0c-5be222c8e6c8 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/a6f37a35-cb18-4395-9a0c-5be222c8e6c8. Formatted as a Frictionless Data package.
DOI: 10.25549/rbm-c58-20370
title: Nude man lifting and holding two 50-lb dumbbells

description: Nude man lifting and holding two 50-lb dumbbells. This is plate 325, captioned "Lifting and holding two 50-lb dumbbells" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-20362
title: Nude man lifting and holding two 50-lb dumbbells

description: Nude man lifting and holding two 50-lb dumbbells. This is plate 325, captioned "Lifting and holding two 50-lb dumbbells" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-20365
title: Nude man lifting and holding two 50-lb dumbbells

description: Nude man lifting and holding two 50-lb dumbbells. This is plate 325, captioned "Lifting and holding two 50-lb dumbbells" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.25549/rbm-c58-20368
title: Nude man lifting and holding two 50-lb dumbbells

description: Nude man lifting and holding two 50-lb dumbbells. This is plate 325, captioned "Lifting and holding two 50-lb dumbbells" from Eadweard Muybridge. Animal locomotion: an electro-photographic investigation of consecutive phases of animal movements. 1872-1885 / published under the auspices of the University of Pennsylvania. Plates. The plates printed by the Photo-Gravure Company. Philadelphia, 1887.
DOI: 10.5281/zenodo.18692368
title: Linked collectors and determiners for: A new species of the genus Acrolocha (Coleoptera: Staphylinidae: Omaliinae) from Yunnan Province, China.

description: Natural history specimen data linked to collectors and determiners held within, "A new species of the genus Acrolocha (Coleoptera: Staphylinidae: Omaliinae) from Yunnan Province, China". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/a9ab053d-a82f-43a7-8f2f-931c58c14d77 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/a9ab053d-a82f-43a7-8f2f-931c58c14d77. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10506542
title: Linked collectors and determiners for: A new species of the genus Acrolocha (Coleoptera: Staphylinidae: Omaliinae) from Yunnan Province, China.

description: Natural history specimen data linked to collectors and determiners held within, "A new species of the genus Acrolocha (Coleoptera: Staphylinidae: Omaliinae) from Yunnan Province, China". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/a9ab053d-a82f-43a7-8f2f-931c58c14d77 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/a9ab053d-a82f-43a7-8f2f-931c58c14d77. Formatted as a Frictionless Data package.