cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26629786
title: Additional file 2 of Transcriptome and metabolome analyses revealed the response mechanism of pepper roots to Phytophthora capsici infection

description: Supplementary Material 2
DOI: 10.15468/dl.c4tvff
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.805187 -33.977225, 148.805187 -33.979471, 148.811924 -33.979471, 148.811924 -33.977225, 148.805187 -33.977225))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070116-240626123714530/datasets/export for details.
DOI: 10.5281/zenodo.10728326
title: Computational screening of the effects of mutations on protein-protein off-rates and dissociation mechanisms by τRAMD

description: Set of data and scripts for the analysis of RAMD dissociation trajectories generated for BN-NS and BT/BCT-BPTI mutants, reported in the manuscript:

"Computational screening of the effects of mutations on protein-protein off-rates and dissociation mechanisms by τRAMD"

by Giulia D'Arrigo, Daria B. Kokh, Ariane Nunes-Alves and Rebecca C. Wade

 



RAMD movies of WT Bn-Bs and D35Abn mutant dissociation pathway (WT-diss.mp4 and D35Abn-diss.mp4)

Protein-Protein.zip contains:




README - set of instructions to go through files and for the use of the scripts

Jupyter notebooks: tauRAMD_PP_Residence_time.ipynb and tauRAMD_PP_Unbinding_pathways.ipynb

Scripts used for analysis and postprocessing RAMD simulations - for the correct usage of the scripts check the corresponding file header

System input files in BN-BS/ and BT_BCT-BPTI/

Experimental data used

2 RAMD movies (.mp4) showing dissociation of WT Bn-Bs and D35Abn mutant
DOI: 10.5281/zenodo.13327834
title: Computational screening of the effects of mutations on protein-protein off-rates and dissociation mechanisms by τRAMD

description: Set of data and scripts for the analysis of RAMD dissociation trajectories generated for BN-NS and BT/BCT-BPTI mutants, reported in the manuscript:

"Computational screening of the effects of mutations on protein-protein off-rates and dissociation mechanisms by τRAMD"

by Giulia D'Arrigo, Daria B. Kokh, Ariane Nunes-Alves and Rebecca C. Wade

 



RAMD movies of WT Bn-Bs and D35Abn mutant dissociation pathway (WT-diss.mp4 and D35Abn-diss.mp4)

Protein-Protein.zip contains:




README - set of instructions to go through files and for the use of the scripts

Jupyter notebooks: tauRAMD_PP_Residence_time.ipynb and tauRAMD_PP_Unbinding_pathways.ipynb

Scripts used for analysis and postprocessing RAMD simulations - for the correct usage of the scripts check the corresponding file header

System input files in BN-BS/ and BT_BCT-BPTI/

Experimental data used

2 RAMD movies (.mp4) showing dissociation of WT Bn-Bs and D35Abn mutant
DOI: 10.6084/m9.figshare.26629786.v1
title: Additional file 2 of Transcriptome and metabolome analyses revealed the response mechanism of pepper roots to Phytophthora capsici infection

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26629792.v1
title: Additional file 4 of Transcriptome and metabolome analyses revealed the response mechanism of pepper roots to Phytophthora capsici infection

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26629789
title: Additional file 3 of Transcriptome and metabolome analyses revealed the response mechanism of pepper roots to Phytophthora capsici infection

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26630704.v1
title: Additional file 11 of Imprinted Dlk1-Gtl2 cluster miRNAs are potential epigenetic regulators of lamb fur quality

description: Additional file 11: Table S8. Differentially expressed miRNAs between good and poor quality fur groups
DOI: 10.6084/m9.figshare.26763871
title: table S1.xlsx

description: the soil properties for the study of fungal plastisphere
DOI: 10.6084/m9.figshare.26629795
title: Additional file 5 of Transcriptome and metabolome analyses revealed the response mechanism of pepper roots to Phytophthora capsici infection

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.26630710.v1
title: Additional file 13 of Imprinted Dlk1-Gtl2 cluster miRNAs are potential epigenetic regulators of lamb fur quality

description: Additional file 13: Table S10. The statistical analysis of miRNAs obtained using the Ensembl database.
DOI: 10.15468/dl.fzjh9e
title: Occurrence Download

description: A dataset containing 35009 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bhutan",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((83.08 23.75,83.08 31.54,96.92 31.54,96.92 23.75,83.08 23.75))"
 ]
}

 The dataset includes 35009 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009554-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qpru5k
title: Occurrence Download

description: A dataset containing 6169 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Anas chlorotis G.R.Gray, 1845"
 ]
}

 The dataset includes 6169 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049992-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8fsbb9
title: Occurrence Download

description: A dataset containing 560 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Sweden, Estonia, Germany, Poland, Switzerland, Austria, Italy, Greece, Bulgaria, Romania, Ukraine, Russian Federation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Fulgensia bracteata (Hoffm.) Räsänen"
 ]
}

 The dataset includes 560 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044724-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wn3fz4
title: Occurrence Download

description: A dataset containing 269 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Orthotomus cinereiceps Sharpe, 1877"
 ]
}

 The dataset includes 269 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050072-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dri1lb
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fig. 4. Simplified macrofossil concentration in sediment core Lz1116"
 ]
}

 The dataset includes 235 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009554-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xreprk
title: Occurrence Download

description: A dataset containing 30833090 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Mexico"
 ]
}

 The dataset includes 30833090 records from 3947 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050095-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hwfocm
title: Occurrence Download

description: A dataset containing 1227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euonymus L.",
 "Geometry POLYGON((121.728515 37.718590,116.630859 36.031331,112.587890 32.398515,109.160156 26.745610,113.378906 21.043491,118.388671 22.755920,121.552734 26.352497,124.101562 29.305561,123.486328 32.768800,121.728515 37.718590))"
 ]
}

 The dataset includes 1227 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003385-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qrmvgn
title: Occurrence Download

description: A dataset containing 1315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Discoglossus jeanneae Busack, 1986"
 ]
}

 The dataset includes 1315 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030553-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zous7z
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Nano and microzooplankton abundance and biomass at station NBP96-04A-17-4"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003385-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3xzbdh
title: Occurrence Download

description: A dataset containing 1327 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Martes zibellina (Linnaeus, 1758)"
 ]
}

 The dataset includes 1327 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049384-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.69xfgb
title: Occurrence Download

description: A dataset containing 409 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kewaceae",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 409 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003385-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uzxyfv
title: Occurrence Download

description: A dataset containing 740 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "Year 2000-2019",
 "GadmGid is one of (COL.30.15_2)"
 ]
 }
 ]
}

 The dataset includes 740 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049378-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.leaijh
title: Occurrence Download

description: A dataset containing 25851 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Saltator atriceps (R.Lesson, 1832)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 25851 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003385-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.usdpqf
title: Occurrence Download

description: A dataset containing 3818 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Inventarios de fauna y flora en los DRMIs Embalse Peñol - Guatapé y Cuenca Alta del Río Guatapé, Las Camelias y el área a declarar Cuenca de San Pedro"
 ]
}

 The dataset includes 3818 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046441-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wabrv6
title: Occurrence Download

description: A dataset containing 12684 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "DecimalLatitude is greater than 40.8945394835804",
 "DecimalLatitude is less than 41.6158968257145",
 "DecimalLongitude is greater than -81.9054286721522",
 "DecimalLongitude is less than -81.2315224836129"
 ]
}

 The dataset includes 12684 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003385-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2hj5k3
title: Occurrence Download

description: A dataset containing 1808 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Sebdeniaceae)"
 ]
}

 The dataset includes 1808 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048137-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.i4rzth
title: Occurrence Download

description: A dataset containing 527 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Washingtonia filifera (Rafarin) H.Wendl. ex de Bary"
 ]
}

 The dataset includes 527 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003385-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r3wygz
title: Occurrence Download

description: A dataset containing 609 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Vochysia divergens Pohl"
 ]
}

 The dataset includes 609 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049388-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vdy33n
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hymenaea oblongifolia Huber",
 "Country is Colombia"
 ]
}

 The dataset includes 110 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003386-150528172251762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9wach9
title: Occurrence Download

description: A dataset containing 15448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Biodiversidad asociada al proyecto Línea de Transmisión de Energía Segundo Circuito San Lorenzo - Calizas a 110 kV, Antioquia"
 ]
}

 The dataset includes 15448 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046448-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.erseya
title: Occurrence Download

description: A dataset containing 2646 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glaucium corniculatum (L.) Rudolph"
 ]
}

 The dataset includes 2646 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003386-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xzp5h7
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000000.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Avena atherantha C.Presl"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035363-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vwpavo
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calyptommatus leiolepis Rodrigues, 1991"
 ]
}

 The dataset includes 16 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003386-150721130643939/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cyjx6s
title: Occurrence Download

description: A dataset containing 150090 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((123.66415 -48.64640,235.97293 -48.64640,235.97293 -3.64640,123.66415 -3.64640,123.66415 -48.64640))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Carex L."
 ]
}

 The dataset includes 150090 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035367-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7auhxc
title: Occurrence Download

description: A dataset containing 12122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caprimulgidae",
 "Country is Mexico"
 ]
}

 The dataset includes 12122 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003386-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9u9exm
title: Occurrence Download

description: A dataset containing 7423 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Monitoreos hidrobiológicos del Valle del Cerrejón en cuatro municipios del departamento de La Guajira"
 ]
}

 The dataset includes 7423 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046429-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yuxjw
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tridacna derasa (Röding, 1798)"
 ]
}

 The dataset includes 73 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003386-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h8ete8
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Atropa acuminata Royle ex Lindl."
 ]
}

 The dataset includes 38 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048744-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xsdst6
title: Occurrence Download

description: A dataset containing 580 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Viola L.",
 "Geometry POLYGON((121.728515 37.857507,117.070312 36.385912,112.412109 33.504759,110.390625 29.228890,112.412109 21.861498,117.685546 22.593726,121.464843 26.273714,123.837890 29.152161,123.925781 34.452218,121.728515 37.857507))"
 ]
}

 The dataset includes 580 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003386-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h2ugwx
title: Occurrence Download

description: A dataset containing 9259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clematis virginiana L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9259 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037063-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.omaojd
title: Occurrence Download

description: A dataset containing 206 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Andrena omninigra Viereck, 1917",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 206 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003386-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pczcym
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alchemilla languescens Juz."
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026139-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktbimm
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fulcaldea stuessyi Roque & V.A.Funk"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003386-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cr6rew
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eupanthalis elongata (Treadwell, 1931)"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054149-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1gobja
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Year 1997-2017",
 "TaxonKey is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 235 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003386-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.