cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17722794
title: MS/ARM data,  δ¹³Corg data, and cyclostratigraphic analysis parameters of the Hanggai and Wanhe sections
DOI: 10.15468/dl.h2wjr9
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((8.88301 43.38777,7.85513 42.59518,8.29683 41.64161,9.47138 41.27834,9.85941 41.53428,9.83877 42.40942,9.53162 43.25349,8.88301 43.38777))",
 "OccurrenceStatus is Present",
 "TaxonKey is Brachypodium stacei"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009709-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frdur3
title: Occurrence Download

description: A dataset containing 278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Opuntia megacantha"
 ]
}

 The dataset includes 278 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009710-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wrp6ds
title: Occurrence Download

description: A dataset containing 6837 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rousettus aegyptiacus",
 "Year 1970-2025"
 ]
}

 The dataset includes 6837 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009711-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17605/osf.io/crz6h
title: Child and Adolescent Mental Health Initiative (CAMHI)

description: As a result of a decade of partnership between the Stavros Niarchos Foundation (SNF) and the Child Mind Institute (CMI), the Children and Adolescent Mental Health Initiative (CAMHI) has been established to help enhance child and adolescent mental health care capacity and strengthen the infrastructure for prevention, assessment, and treatment of mental health struggles faced by children and adolescents in Greece. Under the SNF’s Health Initiative and the associated public-private partnership in place between SNF and the Greek State, the Child Mental Health Initiative (CAMHI) envisions to expand access to mental health care and offer ground-up resources in ways that can reinforce the critical work done by mental health and child protection providers across the country.

Aimed (a) to raise mental health literacy and awareness; b) to increase access to evidence-based mental health care; (c) to build out technological capacity, and (d) to establish a country-wide Referral Network for children and adolescent mental health care, the CAMHI builds on a solid open science-based framework aspiring to leverage scientific knowledge production about children and adolescent mental health and mental health care in Greece. To approach that, the initiative has been following three research approaches (checkout the Home wiki for more).
DOI: 10.15468/dl.btrz33
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "StateProvince is one of (Aguascalientes, Guanajuato, San Luis Potosí, Zacatecas, Jalisco)",
 "TaxonKey is Opuntia megacantha"
 ]
}

 The dataset includes 105 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009713-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9qvyj
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Protobothrops cornutus)",
 "DecimalLatitude is greater than or equal to 0",
 "DecimalLatitude is less than or equal to 60",
 "DecimalLongitude is greater than or equal to 60",
 "DecimalLongitude is less than or equal to 150",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 57 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009712-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q5jue8
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-9.11119 42.83205,-9.09987 42.83164,-9.09751 42.85355,-9.1079 42.85911,-9.12025 42.84841,-9.11119 42.83205))",
 "OccurrenceStatus is Present",
 "TaxonKey is Thalasseus sandvicensis",
 "Year 2024-2025"
 ]
}

 The dataset includes 20 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009718-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f5898a
title: Occurrence Download

description: A dataset containing 18809 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 64.085278",
 "DecimalLatitude is less than or equal to 69.085278",
 "DecimalLongitude is greater than or equal to -140.0",
 "DecimalLongitude is less than or equal to -135.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 18809 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009715-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fcukyg
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Protobothrops dabieshanensis)",
 "DecimalLatitude is greater than or equal to 0",
 "DecimalLatitude is less than or equal to 60",
 "DecimalLongitude is greater than or equal to 60",
 "DecimalLongitude is less than or equal to 150",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009719-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.82j9rw
title: Occurrence Download

description: A dataset containing 89251 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amphibalanus improvisus"
 ]
}

 The dataset includes 89251 records from 245 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009693-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26301/9cpm-7h71
title: Kuda Miskiiy - Gaafaru (KFA-GFR-3)

description: Maldives Heritage Survey works to systematically inventory and digitally document the endangered cultural heritage of the Maldives. The materials documented through this work are critically endangered, facing both natural and human threats that jeopardize the survival and accessibility of historical information for this vital node in pre-modern global economic and religious networks at the cross-roads of an interconnected Indian Ocean world. The data made available here was collected by our Field Team using a FARO Focus S350 Lidar scanner and Drone DJI Phantom 4 Pr for photogrammetry.
description: The sole remaining coral stone mosque on the island. This small mosque currently serves as the islandâ€™s only mosque for women. While documenting this structure a date of 1269 AH (1853 CE) was discovered, inscribed into one of its beams. Parts of the earlier structure were renovated in 2002. The coconut thatch roof has been replaced with corrugated metal.
description: Photogrammetry - Aerial, LiDAR - Terrestrial
DOI: 10.5281/zenodo.17700778
title: FANTASIA Lite V0 – LookUp Table – UniProt November 2025 – Experimental Evidence Code (Last Layer)

description: FANTASIA Lite V0 – LookUp Table

UniProt November 2025 – Experimental Evidence Code (Layer 0 Only)

 

Release: November 2025System: Protein Information System (PIS v3.1.0)Compatibility: FANTASIA Lite V0

📖 Overview
This package contains the lookup table used by FANTASIA Lite V0, a lightweight tool for protein functional annotation based on ProtT5 and Ankh3 embeddings.The lookup table was built from the UniProt November 2025 release and includes only proteins with experimental evidence, ensuring high-quality functional annotations.All data was generated using PIS v3.1.0, the internal system used to extract and preprocess UniProt, PDB, and GOA data. This release is specifically designed to work out-of-the-box with FANTASIA Lite V0.



Core Statistics



Total accessions: 127,546 UniProt entries

Total proteins: 127,546 protein records

Total unique sequences: 124,397 (3,149 proteins share identical sequences due to isoforms and redundancy)

Total GO annotations: 627,932 experimental annotations

Sequence redundancy: 2.47%


Embedding Coverage (Layer 0)



ProtT5-XL-UniRef50: 124,397 embeddings (100% coverage)

Ankh3-Large: 124,397 embeddings (100% coverage)



No database server or external dependencies are required.

📦 Package Contents
(fantasia_lite_lookup_table.zip)Inside the ZIP file, you will find:

lookup_table.npz



Purpose: Precomputed protein embeddings (ProtT5 and Ankh3 only)

Content: Last-layer compressed embeddings for all reference sequences

Usage: Enables fast nearest-neighbor search during annotation

Format: NumPy .npz archive


annotations.json



Purpose: GO annotations of the reference proteins

Content: Experimentally supported GO terms (Molecular Function (F), Biological Process(P), Cellular Component(C))

Evidence included: EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC

Format: JSON mapping from proteins to their GO terms


accessions.json



Purpose: Mapping of internal indices to UniProt accessions

Content: UniProt ID, metadata, sequence length

Usage: Allows the pipeline to retrieve source identifiers

Format: JSON list/dict


🔬 Included GO Evidence Codes (Experimental Only)



EXP — Inferred from Experiment

IDA — Inferred from Direct Assay

IPI — Inferred from Physical Interaction

IMP — Inferred from Mutant Phenotype

IGI — Inferred from Genetic Interaction

IEP — Inferred from Expression Pattern

TAS — Traceable Author Statement

IC — Inferred by Curator
DOI: 10.5281/zenodo.17720428
title: FANTASIA Lite V0 – LookUp Table – UniProt November 2025 – Experimental Evidence Code (Last Layer)

description: FANTASIA Lite V0 – LookUp Table

UniProt November 2025 – Experimental Evidence Code (Layer 0 Only)

 

Release: November 2025System: Protein Information System (PIS v3.1.0)Compatibility: FANTASIA Lite V0

📖 Overview
This package contains the lookup table used by FANTASIA Lite V0, a lightweight tool for protein functional annotation based on ProtT5 and Ankh3 embeddings.The lookup table was built from the UniProt November 2025 release and includes only proteins with experimental evidence, ensuring high-quality functional annotations.All data was generated using PIS v3.1.0, the internal system used to extract and preprocess UniProt, PDB, and GOA data. This release is specifically designed to work out-of-the-box with FANTASIA Lite V0.



Core Statistics



Total accessions: 127,546 UniProt entries

Total proteins: 127,546 protein records

Total unique sequences: 124,397 (3,149 proteins share identical sequences due to isoforms and redundancy)

Total GO annotations: 627,932 experimental annotations

Sequence redundancy: 2.47%


Embedding Coverage (Layer 0)



ProtT5-XL-UniRef50: 124,397 embeddings (100% coverage)

Ankh3-Large: 124,397 embeddings (100% coverage)



No database server or external dependencies are required.

📦 Package Contents
(fantasia_lite_lookup_table.zip)Inside the ZIP file, you will find:

lookup_table.npz



Purpose: Precomputed protein embeddings (ProtT5 and Ankh3 only)

Content: Last-layer compressed embeddings for all reference sequences

Usage: Enables fast nearest-neighbor search during annotation

Format: NumPy .npz archive


annotations.json



Purpose: GO annotations of the reference proteins

Content: Experimentally supported GO terms (Molecular Function (F), Biological Process(P), Cellular Component(C))

Evidence included: EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC

Format: JSON mapping from proteins to their GO terms


accessions.json



Purpose: Mapping of internal indices to UniProt accessions

Content: UniProt ID, metadata, sequence length

Usage: Allows the pipeline to retrieve source identifiers

Format: JSON list/dict


🔬 Included GO Evidence Codes (Experimental Only)



EXP — Inferred from Experiment

IDA — Inferred from Direct Assay

IPI — Inferred from Physical Interaction

IMP — Inferred from Mutant Phenotype

IGI — Inferred from Genetic Interaction

IEP — Inferred from Expression Pattern

TAS — Traceable Author Statement

IC — Inferred by Curator
DOI: 10.34740/kaggle/dsv/13878677
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.6084/m9.figshare.30720353
title: A data binning-based multi-task prediction method for earthquake casualty prediction

description: Reliable earthquake casualty estimates can help governments make quick and precise resource allocation decisions for victim rescue. Although machine learning has been widely applied to casualty prediction, large disparities across earthquake cases and limitedavailable data hinder accurate modeling. This paper proposes a data binning-based multi-task prediction method that enahnces forecasting through task decomposition and adaptive estimator optimization. A data binning tree algorithm first partitions samples into bins with minimal target dispersion by identifying shared attribute patterns. Learning strategies are then tailored by bin size:  for small bins, prediction rules are derived from the tree structure; for big bins, regression models are adaptively constructed using a customized evolutionary algorithm to select the optimal model, parameters, and feature subset. For any new case, we first identify the corresponding bin and then apply the associated estimator. Using real-world earthquake cases, comprehensive experiments verify that the proposed method outperforms several state-of-the-art methods in casualty prediction.
DOI: 10.6084/m9.figshare.30720353.v1
title: A data binning-based multi-task prediction method for earthquake casualty prediction

description: Reliable earthquake casualty estimates can help governments make quick and precise resource allocation decisions for victim rescue. Although machine learning has been widely applied to casualty prediction, large disparities across earthquake cases and limitedavailable data hinder accurate modeling. This paper proposes a data binning-based multi-task prediction method that enahnces forecasting through task decomposition and adaptive estimator optimization. A data binning tree algorithm first partitions samples into bins with minimal target dispersion by identifying shared attribute patterns. Learning strategies are then tailored by bin size:  for small bins, prediction rules are derived from the tree structure; for big bins, regression models are adaptively constructed using a customized evolutionary algorithm to select the optimal model, parameters, and feature subset. For any new case, we first identify the corresponding bin and then apply the associated estimator. Using real-world earthquake cases, comprehensive experiments verify that the proposed method outperforms several state-of-the-art methods in casualty prediction.
DOI: 10.15468/dl.3m694s
title: Occurrence Download

description: A dataset containing 697 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodiola fastigiata"
 ]
}

 The dataset includes 697 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009720-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6ng2k
title: Occurrence Download

description: A dataset containing 16560 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BEL",
 "OccurrenceStatus is Present",
 "TaxonKey is Solanum dulcamara L.",
 "Year 2010-2025"
 ]
}

 The dataset includes 16560 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013791-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zrxrg8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Medicago polymorpha",
 "Country is Madagascar",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024748-250811113504898/datasets/export for details.
DOI: 10.5061/dryad.fp030jg
title: Data from: Habituation underpins preference for mates with novel phenotypes in the guppy

description: Populations harbor enormous genetic diversity in ecologically important
 traits. Understanding the processes that maintain this variation is a
 long-standing challenge in evolutionary biology. Recent evidence indicates
 that a mating preference for novel sexual signals can be a powerful force
 maintaining genetic diversity. However, the proximate underpinnings of
 this preference, and its generality, remain unclear. Here, we test the
 hypothesis that preference for novel sexual signals is underpinned by
 habituation, a nearly ubiquitous form of learning whereby individuals
 become less responsive to repetitive stimuli. We use the Trinidadian guppy
 (Poecilia reticulata), in which male colour patterns are diverse yet
 heritable. We show that repeated exposure to males with a given colour
 pattern reduces female interest in males with that pattern, and that
 interest recovers following brief isolation. These results fulfil two core
 criteria of habituation: responsiveness decline, and spontaneous recovery.
 To distinguish habituation from sensory adaptation and fatigue, we also
 demonstrate stimulus specificity and dishabituation. These results provide
 the first evidence that habituation causes preference for novel sexual
 signals, addressing the mechanistic underpinnings of this mating
 preference. Given the pervasiveness of habituation among taxa and sensory
 contexts, our findings suggest that preference for novelty may play an
 underappreciated role in mate choice and the maintenance of genetic
 variation.
description: Daniel_Proc_B_2019_Data
DOI: 10.5061/dryad.n88s5r3
title: Data from: The preference-performance relationship as a means of classifying parasitoids according to their specialization degree

description: Host range in parasitoids could be described by the preference-performance
 hypothesis (PPH) where preference is defined as host acceptance and
 performance is defined as the sum of all species on which parasitoid
 offspring can complete their life cycle. The PPH predicts that highly
 suitable hosts will be preferred by ovipositing females. However,
 generalist parasitoids may not conform to this hypothesis if they attack a
 large range of hosts of varying suitability. Under laboratory conditions,
 we tested the PPH relationship of three aphid parasitoids currently
 considered as generalist species (Aphelinus abdominalis, Aphidius ervi,
 Diaeretiella rapae). As expected, the three parasitoids species showed low
 selectivity i.e. females stung all aphid species encountered (at least in
 some extent). However, depending on the parasitoid species, only 42-58% of
 aphid species enabled producing parasitoid offspring. We did not find a
 correlation between the extent of preference and the performance of three
 generalist aphid parasitoids. For A. ervi, host phylogeny is also
 important as females showed higher attack and developmental rates on hosts
 closely related to the most suitable one. In addition, traits such as (i)
 the presence of protective secondary endosymbionts, e.g., Hamiltonella
 defensa detected in Aphis fabae and Metopolophium dirhodum, and (ii) the
 sequestration of plant toxins as defense mechanism against parasitism
 e.g., in Aphis nerii and Brevicoryne brassicae, were likely at play to
 some extent in narrowing parasitoid host range. The lack of PPH
 relationship involved a low selectivity leading to a high adaptability, as
 well as selection pressure; the combination of which enabled the
 production of offspring in a new host species or a new environment.
 Testing for PPH relationships in parasitoids may provide useful cues to
 classify parasitoids in terms of specialization degree.
description: DataPreference and
 performance data of three generalist parasitoids.
DOI: 10.5061/dryad.f9s73ms
title: Data from: Environmental veto synchronizes mast seeding in four contrasting tree species

description: Synchronized and variable reproduction by perennial plants, called mast
 seeding, is a major reproductive strategy of trees. Resource budget models
 proposed that masting relies on the depletion of resources following
 fruiting events, which leads to temporal fluctuations in fruiting; while
 outcross pollination or external factors preventing reproduction in some
 years synchronize seed production among trees. We used seed production
 data for four species (Quercus ilex, Q. humilis, Sorbus aucuparia, Pinus
 albicaulis) to parametrize resource budget models of masting. Based on
 species life history characteristics, we hypothesized that pollen coupling
 should synchronize reproduction in S. aucuparia and P. albicaulis, while
 in Q. ilex and Q. humilis environmental veto should be a major factor.
 Pollen coupling was stronger in S. aucuparia and P. albicaulis than in
 oaks, while veto was more frequent in the latter. Yet, in all species,
 costs of reproduction were too small to impose a replenishment period. A
 synchronous environmental veto, in the presence of environmental
 stochasticity, was sufficient to produce observed variability and
 synchrony in reproduction. In the past, vetoes like frost events that
 prevent reproduction have been perceived as negative for plants. In fact,
 they could be selectively favored as a way to create mast seeding.
description: Q.humilis_seed_productionsite - site ID; treeid - tree ID; acorns - acorn counthumilis.csvQ.ilex_seed_productionsite - site ID; treeid - tree ID; acorns - acorn countilex.csvS.aucuparia_fruit_productiontreeid - treeID; fruits - fruit countsorbus.csvP.albicaulis_cone_productionTreeName - treeID; site - site ID; cones - cone countWBP_data.txt