cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28561562
title: Supplementary Material for: Accuracy of intraocular lens power calculation in microspherophakia patients: comparison of 7 formulas

description: Introduction: To compare the accuracy of seven formulas for intraocular lens (IOL) power calculation in patients with microspherophakia (MSP).
Methods: A retrospective case series included 44 eyes from 28 patients with MSP. The mean prediction error (PE) was calculated and the accuracy was determined by formula performance index (FPI), median absolute error (MedAE), and percentage of eyes with a prediction error within ± 0.25 diopters (D), ± 0.50 D, ± 0.75 D and ± 1.00 D. Depending on whether the patients had Marfan syndrome (MFS), MSP patients 36 were sub-divided into MFS and Non-MFS group.
Results: In the non-MFS subgroup, the performance of formulas ranked by FPI from highest to lowest was BUII, EVO, Kane, Haigis, SRK/T, Holladay 1 and Hoffer Q. In the MFS subgroup, Kane achieved the best accuracy regarding the lowest MedAE and the largest percentage of PE in the range of ± 0.50 D. Similar results were obtained in eyes with shallow ACD. In the regular ACD subgroup, the EVO provided the highest prediction accuracy and SRK/T took the second place. In the deep ACD subgroup, Holladay 1 performed superiorly presenting the lowest SD values, MAE and MedAE.
Conclusions: Overall, new generation formulas showed a better trend of refractive outcomes in MSP patients. The Holladay 1 formula was suggested for eyes with deep ACD, while Haigis was not recommended.
DOI: 10.6084/m9.figshare.28674785
title: Supplementary Material for: Younger and older adults' aging well construals: A quantitative word use and topics comparison

description: Introduction: Individuals’ construals of aging capture how they think of aging, and what aging well means to them. Assessing such construals is important for understanding attitudes towards aging and, ultimately, how to tailor personalized aging well interventions to an individual.
Methods: We analyzed 100 younger adults and 92 older adults’ spoken narratives of what aging well means to them using two language analysis approaches, closed vocabulary, word-count analysis via Linguistic Inquiry and Word Count (LIWC) and open vocabulary, word-co-occurrence analysis via topic modelling. 
Results: Younger and older adults’ spoken narratives differed in both word and topic use. Younger adults used more words related to physical aspects, more tentative language, and expressed themselves via higher status language (clout), while older adults used authentic language, i-talk, and words related to work, home, family, and religion. Topic modelling complemented the LIWC analyses and showed that younger adults primarily discussed topics of bodily and cognitive decline, and strategies of preventing aging, conveying concerns about, and negative stereotypes of aging. Older adults topicalized family reflections, openness to new experiences, and their social engagement, signaling a more positive outlook on (continued) aging.
Conclusion: Our complimentary word-count and word-co-occurrence language analyses of aging well construals revealed stark differences between younger and older adults’ perceptions of aging well, that raise important questions about intergenerational exchanges and communications about aging more broadly. Further, we found that aging construals of older adults are useful for estimating their future outlook, an important aspect of resilience against cognitive decline and possible entry point for targeted precision aging interventions.
DOI: 10.6084/m9.figshare.28704968
title: Supplementary Material for: Pleuroperitoneal leak: a rare complication of peritoneal dialysis Case report

description: Introduction: Pleuroperitoneal leakage is a rare but dramatical cause of pleural effusion, it can lead to the cessation of peritoneal dialysis. It typically manifests as respiratory distress and reduced drainage volumes. 
Case presentation: In this article, we report a case of pleuroperitoneal leak in a patient undergoing continuous ambulatory peritoneal dialysis (CAPD) who presented to the emergency with shortness of breath, lower limb edema, and weight gain .The diagnosis was established through pleural puncture, revealing that the pleural fluid is transudative with elevated glucose level which is pathognomonic for this condition “sweet hydrothorax”. Furthermore, the composition of this fluid was almost identical to the peritoneal dialysis effluent. The management of this case involved temporarily discontinuing peritoneal dialysis and performing pleurodesis. The evolution was favorable, and peritoneal dialysis was resumed two weeks later. 
Conclusion: Patients on peritoneal dialysis who present with significant pleural effusion, especially if it is unilateral, should prompt clinicians to consider the possibility of a pleuroperitoneal leak.
DOI: 10.13020/1xfm-mw95
title: Radiatively Driven Convection, 2019 field campaign

description: From May-July 2019, a large array of equipment was deployed in western Lake Superior to study a process called Radiatively Driven Convection (RDC). This occurs when solar radiation is incident on fresh water whose temperature is below the temperature of maximum density, heating and densifying surface waters, driving convection. The goal of the project was to characterize the spatial and temporal scales of this convective process.
description: The primary datasets included here are 
1. temperature data from a large number of precision thermistors
2. current and backscatter data from an acoustic Doppler current profiler (ADCP). 
3. Meteorological data from a surface meteorology buoy
4. Conductivity-temperature-depth (CTD) casts from three cruises associated with the deployment
DOI: 10.15154/1503209
title: Adolescent Brain Cognitive Development Study (ABCD) - Annual Release 2.0

description: The ABCD Curated Annual Release 2.0 includes high quality baseline data from ~11,800 research participants, including minimally processed brain image volumes and tabulated structural MRI, diffusion MRI, resting-state fMRI and task fMRI results, as well as all non-imaging assessment data from the genetics, mental health, physical health, neurocognition, substance use, mobile technology, and culture & environment domains. All personally identifiable information is removed from the data to ensure participant confidentiality and anonymity. For a detailed description of all the measures included in this release, download the Curated Annual Release 2.0 Summary document.
DOI: 10.15156/bio/1280049
title: UNITE general FASTA release for Fungi

description: This release consists of a single FASTA file: the RepS/RefS of all SHs, adopting the dynamically use of clustering thresholds whenever available.
DOI: 10.17632/k7pt2j84f7.1
title: On-board recordings reveal how bats maneuver under severe acoustic interference

description: Data and codes
DOI: 10.17632/w294vd3pgh.2
title: Code and data for "Incoherent feedback from coupled amino acids and ribosome pools generates damped oscillations in growing bacteria"

description: Experimental data gathered and code used for the simulations employed in the manuscript "Incoherent feedback from coupled amino acids and ribosome pools generates damped oscillations in growing bacteria".
In the "shift simulations" folder, you can find the simulation of a base model, which can be used to reproduce the oscillatory behavior induced by nutrient shifts. In addition, there is a code for the numerical computation of the steady-state conditions.
In the "CHI BIO DATA" folder, you can find the data gathered during the chi bio experiments. 
In the "Microfluidic (30 degrees) data" folder, you can find the data gathered during the microfluidic experiments performed at 30 degrees.
For more information on the data and code, please refer to the method section of the paper.

Abstract
 Current theories of bacterial growth physiology demonstrate impressive predictive power but are often phenomenological, lacking mechanistic detail. Incorporating such details would significantly enhance our ability to predict and control bacterial growth under varying environmental conditions. The "Flux Controlled Regulation" (FCR) model serves as a reference framework, linking ribosome allocation to translation efficiency through a steady-state assumption. However, it neglects ppGpp-mediated nutrient sensing and transcriptional regulation of ribosomal operons. We propose a mechanistic model that extends the FCR framework by incorporating three key components: (i) the amino acid pool, (ii) ppGpp sensing of translation elongation rate, and (iii) transcriptional regulation of protein allocation by ppGpp-sensitive promoters. Our model aligns with observed steady-state growth laws and makes testable predictions for unobserved quantities. Here, we show that during environmental changes, the incoherent feedback between sensing and regulation generates oscillatory relaxation dynamics, a behavior that we support by new and existing experimental data.
DOI: 10.17909/2e9c-ec27
title: NUV images for blue blob star formation rates

description: These GALEX NUV images were used to calculate the SFR estimates for the blue blobs in Dey et al.
DOI: 10.18128/d050.v15.0
title: National Historical Geographic Information System: Version 15.0

description: The National Historical Geographic Information System (NHGIS) provides free online access to summary statistics and GIS boundary files for U.S. censuses and other nationwide surveys from 1790 through the present. GIS files include: counties and states since 1790, census tracts since 1910, metropolitan areas since 1950, place and county subdivision boundaries since 1980, place points since 1900, all standard census reporting areas since 1990, 200 and 2010 centers of population for four geographic levels, and SABINS school attendance areas for 2009-12. Summary tables from decennial censuses and the American Community Survey include county and state tables since 1790; census tract tables since 1910; and tables for all original census summary levels, down to census blocks, since 1970. Highlights of additional summary tables include County Business Patterns data (annual, 1970-2002), vital statistics for counties and states (births and deaths: annual, 1915-2007; marriages and divorces: selected years, 1867-2010), agricultural census data (1840-1950), religious bodies data (1850-1952), manufacturing census data (1840-1940), and 2010 census data for SABINS school attendance areas. NHGIS also includes geographic crosswalks summarizing associations between 190-2010 census blocks, environmental summaries describing land cover by county and census tract and climate characteristics by county, and time series tables providing comparable statistics from multiple source years with standardized categories and geography. NHGIS data are available through an online access system and are available free of charge to registered users at http://nhgis.org.
DOI: 10.18140/flx/1669695
title: FLUXNET-CH4 US-StJ St Jones Reserve

description: This is the FLUXNET-CH4 version of the carbon flux data for the site US-StJ St Jones Reserve.
DOI: 10.18430/m36mai
title: X-ray diffraction data for the crystal structure of Deoxyuridine 5'-triphosphate nucleotidohydrolase from Legionella pneumophila Philadelphia 1 (6MAI)
DOI: 10.18430/m36mao
title: X-ray diffraction data for the crystal structure of Deoxyuridine 5'-triphosphate nucleotidohydrolase from Legionella pneumophila Philadelphia 1 in complex with dUMP (Deoxyuridine 5'-monophosphate) (6MAO)
DOI: 10.21238/s8spray1618
title: California Underwater Glider Network

description: The overarching goal of the California Underwater Glider Network is to sustain baseline observations of climate variability off the coast of California. The technical approach is to deploy autonomous underwater gliders in a network to provide real-time data. The CUGN uses Spray underwater gliders making repeated dives from the surface to 500 m and back, repeating the cycle every 3 hours, and traveling 3 km in the horizontal during that time. The CUGN includes gliders on three of the traditional cross-shore CalCOFI lines: line 66.7 off Monterey Bay, line 80 off Point Conception, and line 90 off Dana Point. The glider missions typically last about 100 days, and cover over 2000 km, thus providing 4-6 sections on lines extending 300-500 km offshore. Since 2005 the CUGN has covered 200,000 km over ground in 28 glider-years, while doing 90,000 dives.
DOI: 10.21954/ou.rd.26089588.v1
title: Global distribution and seasonality of martian atmospheric HCl explained through heterogeneous chemistry - Dataset

description: This dataset contains information on the atmospheric fields of Mars, as simulated by a Mars Global Circulation Model (MGCM) that has been extended to include gas-phase chlorine chemistry and heterogeneous chlorine chemistry. It contains the results of two simulations, one with only gas-phase chlorine chemistry (GP) and one with gas-phase and heterogeneous chlorine chemistry (HET).The data included here covers the output from two simulation of approximately 2.5 Mars Years (halfway through MY 34 until the end of MY 36). Further information about the dataset can be found in the included reference document 'Dataset_Introduction.pdf'
DOI: 10.4228/zalf-8mqs-9382
title: Weather Data Muencheberg starting 1991

description: The automatic weather station Müncheberg was installed in 1991 by the Leibniz Centre for Agricultural Landscape Research (ZALF) e.V. and is managed by the Research Platform "Models & Simulation". The station is located within the municipality Müncheberg, district Märkisch-Oderland, state Brandenburg, Germany. Altitude in meter: 62 NN, Geographic latitude: 52,517681 N, Geographic longitude: 14,123200 E,Type: FMA 86. In 2001, the station was replaced by a new system of the same type (Lambrecht SYMNET/IND).
In 1991, data have been collected for: soil temperatur in 20cm depth (°C); global radiation (J/cm²); relative humidity (%); air temperature, 20cm above ground (°C); air temperature, 2m above ground (°C); precipitation (mm); wind velocity(m/s); evaporation (mm)
In 1992 - 1999, data have been collected for: leaf wetness (%); soil temperature in 20cm depth (°C); soil temperature in 5cm depth (°C); soil temperature in 50cm depth (°C); global radiation (J/cm²); relative humidity (%); air temperature, 20cm above ground (°C); air temperature, 2m above ground (°C); precipitation (mm); wind velocity (m/s).
Since 2000, data have been collected for: soil temperature in 20cm depth (°C); soil temperature in 5cm depth (°C); soil temperature in 50cm depth (°C); global radiation (J/cm²); relative humidity (%); air temperature, 20cm above ground (°C); air temperature, 2m above ground (°C); precipitation (mm); wind velocity (m/s).

This datacollection consists of the following original DOI:
https://doi.org/10.4228/ZALF.1991.103
https://doi.org/10.4228/ZALF.1992.108
https://doi.org/10.4228/ZALF.1993.112
https://doi.org/10.4228/ZALF.1994.113
https://doi.org/10.4228/ZALF.1995.114
https://doi.org/10.4228/ZALF.1996.115
https://doi.org/10.4228/ZALF.1997.116
https://doi.org/10.4228/ZALF.1998.117
https://doi.org/10.4228/ZALF.1999.118
https://doi.org/10.4228/ZALF.2000.119
https://doi.org/10.4228/ZALF.2001.123
https://doi.org/10.4228/ZALF.2002.120
https://doi.org/10.4228/ZALF.2003.121
https://doi.org/10.4228/ZALF.2004.124
https://doi.org/10.4228/ZALF.2005.126
https://doi.org/10.4228/ZALF.2006.125
https://doi.org/10.4228/ZALF.2007.129
https://doi.org/10.4228/ZALF.2008.127
https://doi.org/10.4228/ZALF.2009.128
https://doi.org/10.4228/ZALF.2010.170
https://doi.org/10.4228/ZALF.2011.283
https://doi.org/10.4228/ZALF.2012.284
https://doi.org/10.4228/ZALF.2013.285
https://doi.org/10.4228/ZALF.2017.321
https://doi.org/10.4228/ZALF.2015.330
https://doi.org/10.4228/ZALF.2016.331
https://doi.org/10.4228/ZALF.DK.104
https://doi.org/10.4228/ZALF.DK.105
https://doi.org/10.4228/zalf.dk.166
https://doi.org/10.4228/zalf.dk.167
DOI: 10.5066/p97s2iid
title: National Land Cover Database (NLCD) 2011 Land Cover Conterminous United States (ver. 2.0, May 2024)

description: The National Land Cover Database 2011 (NLCD2011) USFS percent tree canopy product was produced through a cooperative project conducted by the Multi-Resolution Land Characteristics (MRLC) Consortium (www.mrlc.gov). The MRLC Consortium is a partnership of federal agencies, consisting of the U.S. Geological Survey, the National Oceanic and Atmospheric Administration, the U.S. Environmental Protection Agency, the U.S. Department of Agriculture (USDA) National Agricultural Statistics Service, the U.S. Forest Service, the National Park Service, the U.S. Fish and Wildlife Service, the Bureau of Land Management, NASA, and the U.S. Army Corps of Engineers. One of the primary goals of the project was to generate current, consistent, and seamless national land cover, percent tree canopy, and percent impervious cover at medium spatial resolution. This product is the cartographic version of the NLCD2011 percent tree canopy cover dataset for CONUS at medium spatial resolution (30 m). It was produced by the USDA Forest Service Remote Sensing Applications Center (RSAC). Tree canopy values range from 0 to 100 percent. The analytic tree canopy layer was produced using a Random Forests? regression algorithm. The cartographic product is a filtered version of the regression algorithm output.
DOI: 10.5066/p9izro3v
title: Central Valley Hydrologic Model version 2 (CVHM2): Well Log Lithology Database and Texture Model

description: These data encompass the geologic framework model for the Central Valley Hydrologic Model Version 2 (CVHM2) study. This includes (1) the Well Log Database which contains borehole information and lithology used in creating the geologic framework, (2) Well Logs with Classification Information which explains how percent coarse values were determined for each borehole, and (3) the Three-Dimensional Framework Model.
DOI: 10.5281/zenodo.10868070
title: Datasets for "Reconciling global terrestrial evapotranspiration estimates from multi-product intercomparison and evaluation"

description: Datasets for "Reconciling global terrestrial evapotranspiration estimates from multi-product intercomparison and evaluation"
DOI: 10.5281/zenodo.14296990
title: FETCH4 Simulation Datasets
DOI: 10.5281/zenodo.14847081
title: Raw data of the research paper
DOI: 10.5281/zenodo.14990263
title: Calcareous Nannofossils, Carbonate Compensation Depth Changes, and Geochemical Proxies across the Eocene-Oligocene Transition: Insights from IODP Site U1438

description: This supporting information provides data regarding the age-depth model and calcareous nannofossil biostratigraphy. 

Figure S1 consist of a global paleogeographic reconstruction at 33 Ma with location of discussed sites. 

We also add four supplementary tables (ST), corresponding to the range chart in counts (ST1a), the range chart in percentages (ST1b), the paleoecologic affinities of some species (ST2), and the geochemical data (ST3).

The manuscript was submitted to Paleoceanography and Paleoclimatology
DOI: 10.5281/zenodo.15011652
title: Global relationships between crop yield and pollinator abundance

description: This data represents the subset of the CropPol database (Allen-Perkins et al., 2022) utilized for the analisys carried out in Vezzani et al 2025 (Global relationships between crop yield and pollinator abundance). For a detailed description of the CropPol database, we refer to the manuscript by Allen-Perkins et al  (2023). The full CropPol dataset, as well as a detailed description of all variables, can be found on the public available Zenodo online repository via https://zenodo.org/doi/10.5281/zenodo.4311291 (Bartomeus & Allen-Perkins 2023).

 

Allen-Perkins, A., Magrach, A., Dainese, M., Garibaldi, L. A., Kleijn, D., Rader, R., Reilly, J. R., Winfree, R., Lundin, O., McGrady, C. M., Brittain, C., Biddinger, D. J., Artz, D. R., Elle, E., Hoffman, G., Ellis, J. D., Daniels, J., Gibbs, J., Campbell, J. W., … Bartomeus, I. (2022). CropPol: A dynamic, open and global database on crop pollination, Ecology, 103, e3614, https://doi.org/https://doi.org/10.1002/ecy.3614

Bartomeus, I. & Allen-Perkins, A. ibartomeus/OBservData: Blueberry. Zenodo https://zenodo.org/doi/10.5281/ zenodo.4311291 (2023).
DOI: 10.5281/zenodo.6342097
title: SVAD Vertebral Neural Canal dimensions

description: This file consists in the complete dataset of antero-posterior (AP) and transverse (TR) diameters measured on the vertebral neural canal (VNC) of the tenth thoracic to the fifth lumbar vertebrae of contemporary individuals from the Subadult Virtual Anthropology Database (SVAD) aged between birth and 20 years from Colombia (dry bone data), France, the Netherlands, Taiwan, and the United States (vertebral surfaces segmented from computed tomography scans). The dataset includes AP and TR diameters, age in years and days, biological sex, country of origin, numerical values of country-level and state-level Human Developmental Indices (HDI), numerical Gini index (country-level of inequality), categorical HDI levels, categorical Gini levels, life history stage, manner of death, and cause of death when applicable. <br> <br> The US individuals originate from the New Mexico Decedent Image Database (NMDID) where the original demogrpahic data and CT scans can be downloaded from. <br> CT scans for individuals from France, the Netherlands, and Taiwan are not openly available for other research.
DOI: 10.58053/mapbiomas/xxuka8
title: Collection 9 of the Annual Land Cover and Land Use Maps of Brazil (1985-2023)

description: The MapBiomas Collection 9 includes annual land cover and land use (LCLU) data and maps from 1985 to 2023. This collection is the result of nine years of the MapBiomas Project and is under constant development. It includes data on land cover and land use, transitions between different classes, and mosaic quality.