cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2fcx80
title: CCDC 2245772: Experimental Crystal Structure Determination

description: Related Article: Cristian Gutiérrez-Peña, Macarena Poyatos, Eduardo Peris|2023|Organometallics|42|1487|doi:10.1021/acs.organomet.3c00120
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.11583/dtu.14673570
title: Deterministic multi-mode gates on a scalable photonic quantum computing platform

description: Data and analysis code (MatLab) supporting "Deterministic multi-mode gates on a scalable photonic quantum computing platform" (Nature Physics 2021,https://doi.org/10.1038/s41567-021-01296-y).This repository includes data and corresponding analysis code for quantum gates and circuits implemented on a continuous variable cluster state by projective measurements and characterized by gate tomography. For more information, see readme.txt.<br> <br> © Technical University of Denmark
DOI: 10.11583/dtu.14673570.v1
title: Deterministic multi-mode gates on a scalable photonic quantum computing platform

description: Data and analysis code (MatLab) supporting "Deterministic multi-mode gates on a scalable photonic quantum computing platform" (Nature Physics 2021,https://doi.org/10.1038/s41567-021-01296-y).This repository includes data and corresponding analysis code for quantum gates and circuits implemented on a continuous variable cluster state by projective measurements and characterized by gate tomography. For more information, see readme.txt.<br> <br> © Technical University of Denmark
DOI: 10.5281/zenodo.8130407
title: CN-861-2_selection-of-resistant-mutants-acba-ATCC-17578-psae-ATCC-27853_MIC_RUB_2023-05-31

description: Selection of resistant mutants to cystobactamid CN-861-2
DOI: 10.5281/zenodo.8130406
title: CN-861-2_selection-of-resistant-mutants-acba-ATCC-17578-psae-ATCC-27853_MIC_RUB_2023-05-31

description: Selection of resistant mutants to cystobactamid CN-861-2
DOI: 10.5281/zenodo.8130437
title: CN-861-2_selection-of-resistant-mutants-acba-ATCC-17578-psae-ATCC-27853_SNP-table_RUB_2023-05-31

description: Selection of resistant mutants to cystobactamid CN-861-2
DOI: 10.5281/zenodo.8130436
title: CN-861-2_selection-of-resistant-mutants-acba-ATCC-17578-psae-ATCC-27853_SNP-table_RUB_2023-05-31

description: Selection of resistant mutants to cystobactamid CN-861-2
DOI: 10.5281/zenodo.8130313
title: CAT-BF_clinical_isolates_MIC_RUB_2023-05-31

description: MIC values of Cathelicidin BF towards clinical isolates
DOI: 10.5281/zenodo.8130312
title: CAT-BF_clinical_isolates_MIC_RUB_2023-05-31

description: MIC values of Cathelicidin BF towards clinical isolates
DOI: 10.4121/12375721-959a-4452-a8cb-dc44277bfe86
title: Data underlying chapter 5 of PhD thesis: Exploring the potential of yeast mitochondria for synthetic cell research

description: The attached datasets belongs to the PhD thesis of Charlotte Koster, more particularly Chapter 5 entitled "Exploration of mRNA-sized RNA import into <em>Saccharomyces cerevisiae</em> mitochondria by a combined synthetic biology and adaptive laboratory evolution approach".Abstract: Efficient gene integration using RNA-guided endonucleases has not yet been achieved in the mitochondrial genome. Import of nucleic acids into mitochondria, a controversial feature, is essential for implementation of Cas9-mediated genome engineering of mitochondria. Short RNA import naturally occurs in mitochondria, and several putative import mechanisms and determinants have been proposed. However to date, import of gene-length RNA, required for gene integration in the mitochondrial genome, has never been described. The goal of this study was to devise and test experimental strategies to detect and improve the import of mRNA-sized RNA in mitochondria, using S. cerevisiae as model. A first fluorescence-based screening approach, relying on mitochondrial import of a fluorescent protein encoding mRNA revealed weak and stochastic RNA import, independent of the import signal fused to the mRNA. This screening also suggested a positive impact of mitochondrial co-import of the mRuby2 fluorescent protein with the mRNA. An adaptive laboratory evolution (ALE) approach, imposing a strong selection pressure for mRNA import to mitochondria, was then designed and tested to improve mitochondrial mRNA import. While the ALE approach did not improve mitochondrial mRNA import in the present study, it is a promising, unambiguous method for future studies testing different RNAs or mutants.
DOI: 10.4121/12375721-959a-4452-a8cb-dc44277bfe86.v1
title: Data underlying chapter 5 of PhD thesis: Exploring the potential of yeast mitochondria for synthetic cell research

description: The attached datasets belongs to the PhD thesis of Charlotte Koster, more particularly Chapter 5 entitled "Exploration of mRNA-sized RNA import into <em>Saccharomyces cerevisiae</em> mitochondria by a combined synthetic biology and adaptive laboratory evolution approach".Abstract: Efficient gene integration using RNA-guided endonucleases has not yet been achieved in the mitochondrial genome. Import of nucleic acids into mitochondria, a controversial feature, is essential for implementation of Cas9-mediated genome engineering of mitochondria. Short RNA import naturally occurs in mitochondria, and several putative import mechanisms and determinants have been proposed. However to date, import of gene-length RNA, required for gene integration in the mitochondrial genome, has never been described. The goal of this study was to devise and test experimental strategies to detect and improve the import of mRNA-sized RNA in mitochondria, using S. cerevisiae as model. A first fluorescence-based screening approach, relying on mitochondrial import of a fluorescent protein encoding mRNA revealed weak and stochastic RNA import, independent of the import signal fused to the mRNA. This screening also suggested a positive impact of mitochondrial co-import of the mRuby2 fluorescent protein with the mRNA. An adaptive laboratory evolution (ALE) approach, imposing a strong selection pressure for mRNA import to mitochondria, was then designed and tested to improve mitochondrial mRNA import. While the ALE approach did not improve mitochondrial mRNA import in the present study, it is a promising, unambiguous method for future studies testing different RNAs or mutants.
DOI: 10.11583/dtu.21511842
title: Unlabelled training datasets of AIS Trajectories from Danish Waters for Abnormal Behavior Detection

description: This item is part of the collection "AIS Trajectories from Danish Waters for Abnormal Behavior Detection" <br> DOI: https://doi.org/10.11583/DTU.c.6287841 <br> Using Deep Learning for detection of maritime abnormal behaviour in spatio temporal trajectories is a relatively new and promising application. Open access to the Automatic Identification System (AIS) has made large amounts of maritime trajectories publically avaliable. However, these trajectories are unannotated when it comes to the detection of abnormal behaviour. <br> The lack of annotated datasets for abnormality detection on maritime trajectories makes it difficult to evaluate and compare suggested models quantitavely. With this dataset, we attempt to provide a way for researchers to evaluate and compare performance. <br> We have manually labelled trajectories which showcase abnormal behaviour following an collision accident. The annotated dataset consists of 521 data points with 25 abnormal trajectories. The abnormal trajectories cover amoung other; Colliding vessels, vessels engaged in Search-and-Rescue activities, law enforcement, and commercial maritime traffic forced to deviate from the normal course <br> These datasets consists of unlabelled trajectories for the purpose of training unsupervised models. For labelled datasets for evaluation please refer to the collection. Link in Related publications. <br> The data is saved using the pickle format for Python Each dataset is split into 2 files with naming convention: datasetInfo_XXX data_XXX Files named "data_XXX" contains the extracted trajectories serialized sequentially one at a time and must be read as such. Please refer to provided utility functions for examples. Files named "datasetInfo" contains Metadata related to the dataset and indecies at which trajectories begin in "data_XXX" files. <br> The data are sequences of maritime trajectories defined by their; timestamp, latitude/longitude position, speed, course, and unique ship identifer MMSI. In addition, the dataset contains metadata related to creation parameters. The dataset has been limited to a specific time period, ship types, moving AIS navigational statuses, and filtered within an region of interest (ROI). Trajectories were split if exceeding an upper limit and short trajectories were discarded. All values are given as metadata in the dataset and used in the naming syntax. <br> Naming syntax: data_AIS_Custom_STARTDATE_ENDDATE_SHIPTYPES_MINLENGTH_MAXLENGTH_RESAMPLEPERIOD.pkl <br> See datasheet for more detailed information and we refer to provided utility functions for examples on how to read and plot the data.<br>
DOI: 10.26165/juelich-data/9jvhek
title: Replication Data for: Formation of highly oxygenated organic molecules from the oxidation of limonene by OH radical: significant contribution of H-abstraction pathway

description: Quantum chemical data used for the theoretical kinetic data, including geometries and vibrational wavenumbers at the M06-2X-D3/aug-cc-pVTZ level of theory, and energies at methodologies up to CCSD(T)/aug-cc-pVTZ
DOI: 10.11583/dtu.16438236
title: Brief communication: Impact of common ice mask in surface mass balance estimates over the Antarctic ice sheet

description: Here is the data used for the publication "Brief communication: Impact of ice mask in surface mass balance estimates over the Antarctic ice sheet" in The Cryosphere by Hansen et al 2021.<br><br>The masks are all regridded to 0.11 degree, and the SMB files gives the summed SMB amount in giga tonnes for the period 1987-2016 (29 years) <br>
DOI: 10.11583/dtu.16438236.v1
title: Brief communication: Impact of common ice mask in surface mass balance estimates over the Antarctic ice sheet

description: Here is the data used for the publication "Brief communication: Impact of ice mask in surface mass balance estimates over the Antarctic ice sheet" in The Cryosphere by Hansen et al 2021.<br><br>The masks are all regridded to 0.11 degree, and the SMB files gives the summed SMB amount in giga tonnes for the period 1987-2016 (29 years) <br>
DOI: 10.6084/m9.figshare.23652730
title: Power_system_inertia_estimation_with_CNN_Linaro_et_al_2023

description: Data for the paper "Continuous Estimation of Power System Inertia Using Convolutional Neural Networks " by Daniele Linaro, Federico Bizzarri, Davide del Giudice, Cosimo Pisani, Giorgio M. Giannuzzi, Samuele Grillo and Angelo Brambilla.<br> This zip file contains the data required to generate all the figures in the paper, including those in the supplementary materials. Two Jupyter notebooks are included, for the main and supplementary figures, respectively. <br> For any question, please contact danielelinaro@gmail.com.
DOI: 10.5281/zenodo.8130370
title: Magnetic resonance images

description: This repository contains two datasets of magnetic resonance images. The datasets were generated and collected from the following sources: 1. BrainWeb: Simulated Brain Database: http://www.bic.mni.mcgill.ca/brainweb/ 2. IXI dataset (Information eXtraction from Images): https://brain-development.org/ixi-dataset/
DOI: 10.5281/zenodo.8130369
title: Magnetic resonance images

description: This repository contains two datasets of magnetic resonance images. The datasets were generated and collected from the following sources: 1. BrainWeb: Simulated Brain Database: http://www.bic.mni.mcgill.ca/brainweb/ 2. IXI dataset (Information eXtraction from Images): https://brain-development.org/ixi-dataset/
DOI: 10.11583/dtu.7980065
title: Data Set for Design and Testing of a Horizontal Rock Bed for High Temperature Thermal Energy Storage

description: Data presented in the paper titled "Design and Testing of a Horizontal Rock Bed for High Temperature Thermal Energy Storage.<b>" </b>Data is generally collected at 1 Hz and temperature, air flow rate, and pressures are logged. All data logged using Labview. <br>
DOI: 10.11583/dtu.7980065.v1
title: Data Set for Design and Testing of a Horizontal Rock Bed for High Temperature Thermal Energy Storage

description: Data presented in the paper titled "Design and Testing of a Horizontal Rock Bed for High Temperature Thermal Energy Storage.<b>" </b>Data is generally collected at 1 Hz and temperature, air flow rate, and pressures are logged. All data logged using Labview. <br>
DOI: 10.11583/dtu.7931444
title: ALEX17 Multi-lidar measurements: vizualizing flow patterns with 2D and 3D wind fields over complex terrain

description: The present dataset is part of the Alaiz Experiment-2017 (ALEX17) conducted close to Pamplona, Spain, from Nov/2017 to Jul/2019. The unique feature of this dataset is the scale (~20km^2) and complexity (&gt;500m elevation change) of the topography covered by the measurements. This dataset consists of measurements of five long-range windscanner lidar systems, performing synchronized scanning trajectories that connects and follow both ridges in a 10km Z-shaped transect 125m a.g.l. where the 2D or 3D wind field can be reconstructed. The lidar scans also measure three 2D/3D virtual met masts in strategic points of the domain.
DOI: 10.11583/dtu.7931444.v1
title: ALEX17 Multi-lidar measurements: vizualizing flow patterns with 2D and 3D wind fields over complex terrain

description: The present dataset is part of the Alaiz Experiment-2017 (ALEX17) conducted close to Pamplona, Spain, from Nov/2017 to Jul/2019. The unique feature of this dataset is the scale (~20km^2) and complexity (&gt;500m elevation change) of the topography covered by the measurements. This dataset consists of measurements of five long-range windscanner lidar systems, performing synchronized scanning trajectories that connects and follow both ridges in a 10km Z-shaped transect 125m a.g.l. where the 2D or 3D wind field can be reconstructed. The lidar scans also measure three 2D/3D virtual met masts in strategic points of the domain.
DOI: 10.11583/dtu.10008020
title: data for: Northern European Salmo trutta (L.) populations are genetically divergent across geographical regions and environmental gradients.

description: SNP genotype data used in: Bekkevold, D. , Höjesjö, J. , Nielsen, E. E., Aldvén, D. , Als, T. D., Sodeland, M. , Kent, M. P., Lien, S. and Hansen, M. M. (2019), Northern European <i>Salmo trutta</i> (L.) populations are genetically divergent across geographical regions and environmental gradients. Evol Appl. doi:10.1111/eva.12877.<br>The file is a comma-separated text file, where each row gives a list of 3782 genotypes; one row per individual (2090 total). Each individual is denoted by its collection ID, given as a 'River number' following Table 1 in Bekkevold et al. (doi:10.1111/eva.12877), followed by an underscore (_), followed by 'Individual number'. Individual SNP locus names are given in the top row. Genotypes are given as the copy number of the major allele (0,1,2). Missing genotypes are given as 9.<br>
DOI: 10.11583/dtu.10008020.v1
title: data for: Northern European Salmo trutta (L.) populations are genetically divergent across geographical regions and environmental gradients.

description: SNP genotype data used in: Bekkevold, D. , Höjesjö, J. , Nielsen, E. E., Aldvén, D. , Als, T. D., Sodeland, M. , Kent, M. P., Lien, S. and Hansen, M. M. (2019), Northern European <i>Salmo trutta</i> (L.) populations are genetically divergent across geographical regions and environmental gradients. Evol Appl. doi:10.1111/eva.12877.<br>The file is a comma-separated text file, where each row gives a list of 3782 genotypes; one row per individual (2090 total). Each individual is denoted by its collection ID, given as a 'River number' following Table 1 in Bekkevold et al. (doi:10.1111/eva.12877), followed by an underscore (_), followed by 'Individual number'. Individual SNP locus names are given in the top row. Genotypes are given as the copy number of the major allele (0,1,2). Missing genotypes are given as 9.<br>
DOI: 10.11583/dtu.10259798
title: Systems approach to the development of integrated solutions in the Nordic manufacturing industry

description: Solutions are a seamless integration of product and services to fulfil customer needs. The project focuses on how to integrate product development processes (based on product characteristics) and service development processes (based on activities and processes) to develop integrated solutions through a systems approach. Specifically, the project targets the issue of uncertainty management within solution development which manifests itself in high failure rates across industry sectors (as high as 79% failure rates with 25% of companies incurring losses). These uncertainties can arise from the increased operational complexity of solution development and is thus a core issue for managers in practice. This project will focus on categorising these uncertainties, identifying suitable management approaches for reducing and navigating uncertainties and disseminating results and guiding heuristics to engineering managers and other leading practitioners in relevant companies.
DOI: 10.11583/dtu.10259798.v1
title: Systems approach to the development of integrated solutions in the Nordic manufacturing industry

description: Solutions are a seamless integration of product and services to fulfil customer needs. The project focuses on how to integrate product development processes (based on product characteristics) and service development processes (based on activities and processes) to develop integrated solutions through a systems approach. Specifically, the project targets the issue of uncertainty management within solution development which manifests itself in high failure rates across industry sectors (as high as 79% failure rates with 25% of companies incurring losses). These uncertainties can arise from the increased operational complexity of solution development and is thus a core issue for managers in practice. This project will focus on categorising these uncertainties, identifying suitable management approaches for reducing and navigating uncertainties and disseminating results and guiding heuristics to engineering managers and other leading practitioners in relevant companies.
DOI: 10.57775/1d7v-s555
title: The impact of COVID-19 on chronic care patients health care utilization and health outcomes in Haiti, Malawi, Mexico and Rwanda

description: Title: The impact of COVID-19 on chronic care patients health care utilization and health outcomes in Haiti, Malawi, Mexico and Rwanda

Original data source: Electronic Medical Records

Date range: March 1st, 2019-Feb 28th, 2021

Geographic region: Non-representative subnational regions of Haiti, Malawi, Mexico, and Rwanda

Clinical populations: Diabetes, HIV, and hypertension patients

Level of data: Aggregated by country, sex, age category, clinical population, and pre- vs post-COVID-19 period

Size of the data: 35 KB

Research question/s that use the dataset

Has the COVID-19 pandemic changed the risk of poor clinical outcomes among chronic care patients living with HIV, cardiovascular disease and diabetes programs in Haiti, Malawi, Mexico and Rwanda?
Among these patients, how has care utilization changed during the COVID-19 pandemic?
Useful Links https://icoda-research.org/project/dp-pih-covco/

Data access information: In order to request access to data, please contact Jean Claude Mugunga, jmugunga@pih.org, with a description of your study team, your research questions, and which countr(ies) and clinical program(s) you would like data for. Note that Dr. Mugugna will reach out to representatives from each country you request data from for approval before sharing the data.
DOI: 10.57775/23y0-rg03
title: Data set: Service delivery and institutional mortality indicators from Nepal

description: This dataset contains a series of service delivery and institutional mortality indicators from the Nepal dhis2 for the period of January 2019 to December 2020. This monthly dataset includes 15 months pre-COVID and 9 months during the pandemic.

The unit of analysis is the palika (lowest subnational administrative division in Nepal). The dataset covers all palikas (N=753) over 24 months.

Data cleaning included: imputing 0s for missing mortality indicator values if the service that it relates to is non-missing (e.g., facility deliveries and maternal deaths, neonatal deaths and stillbirths, inpatient admissions and inpatient deaths). For any given indicator, removing any unit that reports less than 15 out of 24 months. Set to missing any value greater than 3.5 standard deviation from the mean over 24 months.

Permissions to use this dataset must be obtained from the Ministry of Health and Population of Nepal.
DOI: 10.57775/5v69-mc44
title: Data set: Service delivery and institutional mortality indicators from Lao PDR

description: This dataset contains a series of service delivery and institutional mortality indicators from the Lao People's Democratic Republic dhis2 for the period of January 2019 to December 2020. This monthly dataset includes 15 months pre-COVID and 9 months during the pandemic.

The unit of analysis is the health facility. The dataset covers all regions over 24 months, and includes all public sector health facilities in the country.

Data cleaning included: imputing 0s for missing mortality indicator values if the service that it relates to is non-missing (e.g., facility deliveries and maternal deaths, neonatal deaths and stillbirths, inpatient admissions and inpatient deaths). For any given indicator, removing any unit that reports less than 15 out of 24 months. Set to missing any value greater than 3.5 standard deviation from the mean over 24 months.

Permissions to use this dataset must be obtained from the Ministry of Health Lao PDR.
DOI: 10.11583/dtu.8647211
title: Deterministic generation of a two-dimensional cluster state

description: Data and analysis code supporting "Deterministic generation of a two-dimensional cluster state" (https://doi.org/10.1126/science.aay4354). This repository includes two data sets: A short set of 400us long time traces, and a long set of 4ms long time traces, both acquired from two homodyne detectors continuously measuring x- and p-quadratures on the output af a temporal multiplexed 2D cluster state generation setup. With the code provided, quadratures of the cluster state's temporal modes are extracted from the time traces, and the nullifier variance are calculated as result. For more information, see readme.txt.
DOI: 10.5523/bris.2inq7agt7hyy62g2px1uczc2w5
title: Data for: Bayesian spatio-temporal models for mapping urban pedestrian traffic

description: Data and code in the R programming language associated with the manuscript "Bayesian spatio-temporal models for mapping urban pedestrian traffic" published in the Journal of Transport Geography. All data is derived from openly available sources.
DOI: 10.11583/dtu.21155521
title: 2H-TMDC CO and H adsorption databases

description: ASE databases with most favorable adsorption sites for H , CO and COOH at four different 2H-TMDC edges calculated by DFT. Initial TMDC structures are selected from the Computational 2D database (C2DB) based on thermodynamic and dynamic stability criteria. The results are presented in the following article: <br> Pedersen, P. D. et al., Trends in CO2 reduction on Transition Metal Dichalcogenide Edges, ACS Catalysis (2023)