cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12754726
title: NIBIO_MLS: a forest point cloud panoptic segmentation dataset from mobile laser scanning (Geoslam Horizon)

description: General description

This dataset consists of a ML-ready labelled mobile laser scanning (MLS) point cloud dataset including 16 manually labelled forest plots (approx. 250 m2) for forest panoptic segmentation and thus including both semantic and instance labels. The data was collected using a Geoslam Horizon RT and processed using Geoslam Hub.

Labels

The data were then labelled into the following semantic classes (label):



1= ground

2= vegetation: these include both branches, leaves, and low vegetation

3= lying deadwood

4= stems


In addition for each tree, a unique tree identifier (treeID) was also assigned to each point.

Data split

Each plot was split into train (50%), validation (25%), and test (25%) sets by dividing the circular plot into four slices, out of which the first two were used for training, the third for validation, and the fourth for test. 

Thus the users might play around with merging the train and validation dataset as they prefer. These two sets can be used during model training, hyperparameter tuning, and model selection. However, the test set should be kept as an independent set to be used for benchmarking against the values reported in the two studies indicated below. 

Citation

To cite this datasets and for a more detailed description use:

Wielgosz, M., Puliti, S., Xiang, B., Schindler, K. and Astrup, R., 2024. SegmentAnyTree: A sensor and platform agnostic deep learning model for tree segmentation using laser scanning data. Remote Sensing of Environment; 

Other studies using these data

Wielgosz, M., Puliti, S., Wilkes, P. and Astrup, R., 2023. Point2Tree (P2T)—Framework for parameter tuning of semantic and instance segmentation used with mobile laser scanning data in coniferous forest. Remote Sensing, 15(15), p.3737; available here

Funding

This work is part of the Center for Research-based Innovation SmartForest: Bringing Industry 4.0 tothe Norwegian forest sector (NFR SFI project no. 309671, smartforest.no).

⚖️ Licensing

📄 Please refer to the specific licenses below for details on how the data can be used.

🔑 Key Licensing Principles:



✅ You may access, use, and share the dataset and models freely.

🔄 Any derivative works (e.g., trained models, code for training, or prediction tools) must also be made publicly available under the same licensing terms.

🌍 These licenses promote collaboration and transparency, ensuring that research using this dataset benefits the broader scientific and open-source community 🙌
DOI: 10.5281/zenodo.12754725
title: NIBIO_MLS: a forest point cloud panoptic segmentation dataset from mobile laser scanning (Geoslam Horizon)

description: General description

This dataset consists of a ML-ready labelled mobile laser scanning (MLS) point cloud dataset including 16 manually labelled forest plots (approx. 250 m2) for forest panoptic segmentation and thus including both semantic and instance labels. The data was collected using a Geoslam Horizon RT and processed using Geoslam Hub.

Labels

The data were then labelled into the following semantic classes (label):



1= ground

2= vegetation: these include both branches, leaves, and low vegetation

3= lying deadwood

4= stems


In addition for each tree, a unique tree identifier (treeID) was also assigned to each point.

Data split

Each plot was split into train (50%), validation (25%), and test (25%) sets by dividing the circular plot into four slices, out of which the first two were used for training, the third for validation, and the fourth for test. 

Thus the users might play around with merging the train and validation dataset as they prefer. These two sets can be used during model training, hyperparameter tuning, and model selection. However, the test set should be kept as an independent set to be used for benchmarking against the values reported in the two studies indicated below. 

Citation

To cite this datasets and for a more detailed description use:

Wielgosz, M., Puliti, S., Xiang, B., Schindler, K. and Astrup, R., 2024. SegmentAnyTree: A sensor and platform agnostic deep learning model for tree segmentation using laser scanning data. Remote Sensing of Environment; 

Other studies using these data

Wielgosz, M., Puliti, S., Wilkes, P. and Astrup, R., 2023. Point2Tree (P2T)—Framework for parameter tuning of semantic and instance segmentation used with mobile laser scanning data in coniferous forest. Remote Sensing, 15(15), p.3737; available here

Funding

This work is part of the Center for Research-based Innovation SmartForest: Bringing Industry 4.0 tothe Norwegian forest sector (NFR SFI project no. 309671, smartforest.no).

⚖️ Licensing

📄 Please refer to the specific licenses below for details on how the data can be used.

🔑 Key Licensing Principles:



✅ You may access, use, and share the dataset and models freely.

🔄 Any derivative works (e.g., trained models, code for training, or prediction tools) must also be made publicly available under the same licensing terms.

🌍 These licenses promote collaboration and transparency, ensuring that research using this dataset benefits the broader scientific and open-source community 🙌
DOI: 10.25850/nioz/7b.b.uh
title: MOBYDICK Zooplankton Fatty Acid

description: Knowledge of the trophic ecology of zooplankton is essential for evaluating their functional roles in marine food webs and nutrient cycling since they represent the link between primary producers and higher trophic levels. Here we investigated the fatty acid (FA) composition of different zooplankton size classes and selected species collected at the vicinity of the Sub-Antarctic Kerguelen Islands in late austral summer 2018 as part of the MOBYDICK research project. The analysis revealed that zooplankton FA composition varied significantly across size classes and species but not among stations. Larger zooplankton generally had higher total FA (TFA) amounts per dry weight (22.1 ± 3.0 vs. 61.9 ± 11.8 mg g-1). Essential FAs (EFA) accounted for 40.5 ± 0.8 % of TFA, with 22:6n-3 (DHA) and 20:5n-3 (EPA) being the most prominent. Diatom trophic markers (TM) were abundant in larger zooplankton size classes, while non-diatom TM were more prevalent in smaller size classes. The FA-based nutritional quality index (NQI) of zooplankton was positively correlated with EFA, and it was higher than the NQI of phytoplankton concurrently collected, indicating its better nutritional quality compared to primary producers. This study highlights the importance of size and species-specific dietary preferences in determining zooplankton FA profiles and the high nutritional quality of this group collected during late austral summer, which significantly contribute to our understanding of zooplankton's ecological role in marine food webs in the Southern Ocean.
DOI: 10.15468/dl.dsf48a
title: Occurrence Download

description: A dataset containing 629 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sicista betulina (Pallas, 1779)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 629 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000053-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/qahp2r
title: MADRS_MaddenDissertation_Chapter4_SupCourtSampled+Population

description: This spreadsheet contains case names, citations, and hyperlinks for the full population of Canadian superior court decisions (other than those from Quebec) from 2022, and identifies the 193 decisions from within this population that were randomly selected for study within Chapter 4 of Mike Madden's doctoral dissertation.
DOI: 10.15468/dl.y7pq2y
title: Occurrence Download

description: A dataset containing 7363 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Canis lupus Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 7363 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000055-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f2yc5m
title: Occurrence Download

description: A dataset containing 710 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Canis aureus Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 710 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000056-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rdcb8
title: Occurrence Download

description: A dataset containing 957260 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-53.90225 47.87031,-53.92142 47.68822,-53.87829 47.38153,-54.18018 46.98859,-54.20414 46.79691,-53.94538 46.81608,-53.61952 47.18506,-53.52368 47.14194,-53.64348 47.07006,-53.56681 46.89275,-53.68661 46.66753,-53.54285 46.60044,-53.37034 46.72983,-53.28888 46.64836,-53.02532 46.6292,-52.57488 47.60196,-52.78572 47.83198,-53.14033 47.45341,-52.91031 48.177,-53.10199 48.04761,-53.17387 48.09553,-53.53327 47.56363,-53.90225 47.87031))",
 "Geometry POLYGON((-54.13226 48.38784,-54.04224 48.1079,-54.15801 48.00266,-54.18433 47.86583,-54.54217 47.36591,-54.64215 47.37643,-54.80003 47.38696,-55.05262 47.22382,-55.37889 46.88177,-55.4894 46.92386,-55.67885 46.84493,-55.96828 46.90808,-56.02617 46.73442,-55.91565 46.66601,-55.69463 46.67127,-54.12118 46.68179,-53.95278 46.8344,-54.18497 46.81129,-54.17539 46.97422,-53.86391 47.39591,-53.93579 47.60675,-53.89266 47.85594,-53.77287 47.77447,-53.38472 48.25846,-53.31763 48.33992,-53.10678 48.37347,-52.91511 48.54598,-53.07803 48.68974,-53.28409 48.5316,-53.2745 48.62744,-53.43743 48.6514,-53.49972 48.49327,-53.65786 48.56035,-54.13226 48.38784))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 957260 records from 252 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000032-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.2909/71347ee9-7277-443b-9ff3-4975c97052e7
title: Climate related economic losses (1980-2023)

description: This indicator considers the number of fatalities, the overall and insured economic losses from weather- and climate-related events in the EEA member countries in the period from 1980 to 2023. Hazards considered are those classified as meteorological hazards, hydrological hazards and climatological hazards, based on the classification by the International Council for Science (ICSU).
DOI: 10.15468/dl.yxaf8b
title: Occurrence Download

description: A dataset containing 876 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ursus arctos Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 876 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000057-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b9rfa7
title: Occurrence Download

description: A dataset containing 178715 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Mexico",
 "Country is Canada"
 ]
 },
 "DatasetKey is hymenoptera",
 {
 "or" : [
 "TaxonKey is Apidae",
 "TaxonKey is Megachilidae",
 "TaxonKey is Melittidae",
 "TaxonKey is Halictidae",
 "TaxonKey is Colletidae",
 "TaxonKey is Andrenidae"
 ]
 }
 ]
}

 The dataset includes 178715 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182032-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrf3fs
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Ukraine",
 "TaxonKey is Ictalurus punctatus (Rafinesque, 1818)"
 ]
}

 The dataset's 1 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000040-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gkub85
title: Occurrence Download

description: A dataset containing 7158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-38.09277 42.37258,75.09277 42.37258,75.09277 87.62742,-38.09277 87.62742,-38.09277 42.37258))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Scolelepis korsuni Sikorski, 1994"
 ]
}

 The dataset includes 7158 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000058-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.58053/mapbiomas/0d2trh
title: Coverage and transitions statistics by land categories and protected areas - Quilombos - MapBiomas Brasil Collection 9

description: Area data (ha) of land cover class for Quilombos from 1985 to 2023, based on MapBiomas Brazil Collection 9
DOI: 10.15468/dl.xyzsa6
title: Occurrence Download

description: A dataset containing 33587 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lutra lutra (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 33587 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000059-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xj3wu9
title: Occurrence Download

description: A dataset containing 1445085 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carassius auratus (Linnaeus, 1758), Carassius carassius (Linnaeus, 1758), Ctenopharyngodon idella (Valenciennes, 1844), Cyprinus carpio Linnaeus, 1758, Esox lucius Linnaeus, 1758, Hypophthalmichthys molitrix (Valenciennes, 1844), Hypophthalmichthys nobilis (Richardson, 1845), Leuciscus idus (Linnaeus, 1758), Leuciscus leuciscus (Linnaeus, 1758), Micropterus salmoides (Lacepède, 1802))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1445085 records from 1197 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000034-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sa4ykf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hypsipetes haynaldi (Blasius, 1890))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292161-220831081235567/datasets/export for details.
DOI: 10.15468/dl.vcqq97
title: Occurrence Download

description: A dataset containing 4468 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Asterodon Pat."
 ]
}

 The dataset includes 4468 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138634-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6xkfac
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melaniparus pallidiventris (Reichenow, 1885))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292124-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4gwy9d
title: Occurrence Download

description: A dataset containing 501 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ficus obliqua G.Forst.",
 "HasGeospatialIssue is FALSE",
 "Year is 2000,2022",
 "HasCoordinate is TRUE",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 501 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138649-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22czkf
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hypsipetes chloris (Finsch, 1867))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292168-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5e9ate
title: Occurrence Download

description: A dataset containing 197 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abrotanella scapigera (F.Muell.) Benth."
 ]
}

 The dataset includes 197 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292144-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c5d6pm
title: Occurrence Download

description: A dataset containing 29169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((5.39732 51.40925,5.53280 51.40925,5.53280 51.46348,5.39732 51.46348,5.39732 51.40925))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 29169 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159886-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4s8pwm
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Betula fargesii Franch."
 ]
}

 The dataset includes 30 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292172-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4j8wf
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-159.91928 21.80068,-159.12709 21.80068,-159.12709 22.31462,-159.91928 22.31462,-159.91928 21.80068))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cyanea coriacea (A.Gray) Hillebr."
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159871-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r4hcup
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abrus bottae Deflers"
 ]
}

 The dataset includes 18 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292167-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ndb55u
title: Occurrence Download

description: A dataset containing 2144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ficus insipida Willd.",
 "HasGeospatialIssue is FALSE",
 "Year is 2000,2022",
 "HasCoordinate is TRUE",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 2144 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138642-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.scztbx
title: Occurrence Download

description: A dataset containing 567 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhynchosia pyramidalis (Lam.) Urb."
 ]
}

 The dataset includes 567 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292186-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.36wrn2
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Ailuropoda melanoleuca (David, 1869)"
 ]
}

 The dataset includes 100 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161137-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdx4rj
title: Occurrence Download

description: A dataset containing 431 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Linum neomexicanum Greene"
 ]
}

 The dataset includes 431 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010588-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.udw3qx
title: Occurrence Download

description: A dataset containing 36630 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stenella coeruleoalba (Meyen, 1833)"
 ]
}

 The dataset includes 36630 records from 345 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161148-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.