cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2tmqsy
title: Occurrence Download

description: A dataset containing 12940 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "DatasetKey is Field Museum of Natural History (Zoology) Mammal Collection",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12940 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026825-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ftxf3d
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Ziziphus thyrsiflora Benth."
 ]
}

 The dataset includes 104 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026826-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.20227107
title: Database published in Increasing the number of stressors reduces soil ecosystem services worldwide | Nature Climate Change

description: Rillig M.C. et al. <strong>Increasing the number of stressors reduces soil ecosystem services worldwide </strong>
DOI: 10.15468/dl.bap695
title: Occurrence Download

description: A dataset containing 26526 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "DatasetKey is AMNH Bird Collection",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 26526 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026827-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.x54cw40h
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (559 records)
DOI: 10.6084/m9.figshare.22688020.v2
title: Genomic Correlates of Tailocin Sensitivity

description: Compressed folders containing input/output files for Roary and Scoary analyses as well as phylogenetic analyses from the associated manuscript are included. We also include a raw unedited image used to create overlay assay images in the associated manuscript. File S1 includes documentation of methods for genome sequencing of various strains mentioned in the manuscript, while Table S1 include sequencing statistics for these genomes.
DOI: 10.15468/dl.pptywy
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Agave graminifolia (Rose) Govaerts & Thiede"
 ]
}

 The dataset includes 39 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026828-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ja2af
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "DatasetKey is NMNH Extant Specimen Records (USNM, US)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Allobates zaparo (Silverstone, 1976)"
 ]
}

 The dataset includes 71 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026830-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.whh243
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jacquinia sprucei Mez"
 ]
}

 The dataset includes 96 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026831-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zxz8u2
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Allobates zaparo (Silverstone, 1976)"
 ]
}

 The dataset includes 71 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026832-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3fhz9g
title: Occurrence Download

description: A dataset containing 3638 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Philodendron hederaceum (Jacq.) Schott"
 ]
}

 The dataset includes 3638 records from 209 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026835-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7nkq57
title: Occurrence Download

description: A dataset containing 45362 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "GadmGid is one of (COL.2.108_2)"
 ]
}

 The dataset includes 45362 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026836-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kwg6xx
title: Occurrence Download

description: A dataset containing 2139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Peru",
 "DatasetKey is Registro de Fauna Silvestre en el Inventario Nacional Forestal y de Fauna Silvestre-SERFOR, Perú",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (June, October, November, December)",
 "Year 1963-2024"
 ]
}

 The dataset includes 2139 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026840-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6eg9w
title: Occurrence Download

description: A dataset containing 91341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is 7b8aff00-a9f8-11d8-944b-b8a03c50a862"
 ]
}

 The dataset includes 91341 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026837-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ts745
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Entomology Division, Yale Peabody Museum",
 "GadmGid is USA.27_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus Latreille, 1802",
 "Year 1977-1977"
 ]
}

 The dataset includes 249 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026842-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s5jc6e
title: Occurrence Download

description: A dataset containing 320 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eryngium longifolium Cav."
 ]
}

 The dataset includes 320 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026841-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25573/data.22775651
title: Chapter 59 - Advancing our understanding of tropical forests and improving the predictive capability of vegetation models with data-model integration at BCI - Table S1 - List of NGEE-Tropics Datasets, Barro Colorado Island, Panama

description: Table S1. List of NGEE-Tropics Datasets, Barro Colorado Island, PanamaOnline Supplementary Material for Chitra-Tarak, R., J. F. Needham, A. Hanbury-Brown, E. Robles, C. Varadharajan, R. Knox, and L. Kueppers. 2024. Advancing Our Understanding of Tropical Forests and Improving the Predictive Capability of Vegetation Models With Data-Model Integration at BCI. In The First 100 Years of Research on Barro Colorado: Plant and Ecosystem Science, ed. H. C. Muller-Landau and S. J. Wright: Smithsonian Institution Scholarly Press. https://doi.org/10.5479/si.26880805List of data products with DOIs derived from BCI observations specifically for use by Vegetation Demography Models (VDMs) and new data produced by the NGEE-Tropics project to fill gaps in observations important to VDM simulations, as well as simulation outputs. Complete datasets are publicly available through the NGEE-Tropics archive (https://ngt-data.lbl.gov/dois/). Digital Object Identifiers (DOI) are persistent identifiers that can be used to cite data products. Each dataset is also given a project identifier (Dataset ID). List is as of April 2023. These are data products in addition to all of the research datasets generated at BCI over 100 years.<br>Citation for Online Resource:Chitra-Tarak, R., J. F. Needham, A. Hanbury-Brown, E. Robles, C. Varadharajan, R. Knox, and L. Kueppers. 2024. Chapter 59 - Advancing our understanding of tropical forests and improving the predictive capability of vegetation models with data-model integration at BCI - Table S1 - List of NGEE-Tropics Datasets, Barro Colorado Island, Panama. Smithsonian Figshare. https://doi.org/10.25573/data.22775651
DOI: 10.25573/data.22775651.v1
title: Chapter 59 - Advancing our understanding of tropical forests and improving the predictive capability of vegetation models with data-model integration at BCI - Table S1 - List of NGEE-Tropics Datasets, Barro Colorado Island, Panama

description: Table S1. List of NGEE-Tropics Datasets, Barro Colorado Island, PanamaOnline Supplementary Material for Chitra-Tarak, R., J. F. Needham, A. Hanbury-Brown, E. Robles, C. Varadharajan, R. Knox, and L. Kueppers. 2024. Advancing Our Understanding of Tropical Forests and Improving the Predictive Capability of Vegetation Models With Data-Model Integration at BCI. In The First 100 Years of Research on Barro Colorado: Plant and Ecosystem Science, ed. H. C. Muller-Landau and S. J. Wright: Smithsonian Institution Scholarly Press. https://doi.org/10.5479/si.26880805List of data products with DOIs derived from BCI observations specifically for use by Vegetation Demography Models (VDMs) and new data produced by the NGEE-Tropics project to fill gaps in observations important to VDM simulations, as well as simulation outputs. Complete datasets are publicly available through the NGEE-Tropics archive (https://ngt-data.lbl.gov/dois/). Digital Object Identifiers (DOI) are persistent identifiers that can be used to cite data products. Each dataset is also given a project identifier (Dataset ID). List is as of April 2023. These are data products in addition to all of the research datasets generated at BCI over 100 years.<br>Citation for Online Resource:Chitra-Tarak, R., J. F. Needham, A. Hanbury-Brown, E. Robles, C. Varadharajan, R. Knox, and L. Kueppers. 2024. Chapter 59 - Advancing our understanding of tropical forests and improving the predictive capability of vegetation models with data-model integration at BCI - Table S1 - List of NGEE-Tropics Datasets, Barro Colorado Island, Panama. Smithsonian Figshare. https://doi.org/10.25573/data.22775651
DOI: 10.15468/dl.hcz2sb
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "DatasetKey is LSUMZ Birds Collection",
 "OccurrenceStatus is Present",
 "TaxonKey is Amazilia fimbriata (J.F.Gmelin, 1788)"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026844-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zwakg
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is USA.22_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Sabatia kennedyana Fernald"
 ]
}

 The dataset includes 138 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026843-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xp2syr
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Colibri thalassinus (Swainson, 1827)"
 ]
}

 The dataset includes 43 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026847-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25573/data.22775681
title: Chapter 74 - <i>Ocotea oblonga:</i> a gynodioecious tree - Table S1 - Data for reproductive individuals of <i>Ocotea oblonga </i>censused from 2016 to 2019 in five plots located in BCI.

description: Table S1. Data for reproductive individuals of <i>Ocotea oblonga</i> censused from 2016 to 2019 in five plots located in BCI.<i>Ocotea oblonga </i>censused from 2016 to 2019 in five plots located in BCI.Online Supplementary Material forPenagos Zuluaga, J. C. 2024. <i>Ocotea oblonga:</i> a Gynodioecious Tree. In <i>The First 100 Years of Research on Barro Colorado: Plant and Ecosystem Science</i>, ed. H. C. Muller-Landau and S. J. Wright. Washington, DC: Smithsonian Institution Scholarly Press. https://doi.org/10.5479/si.26880841Plot: the name of the plot in which the tree is located.<br>Tag: the tree tag, a unique identifier within a given plot.<br>X and Y: the distance (m) from the origin (SW corner).<br>Sex: H, trees with hermaphroditic flowers, F: trees with female flowers.<br>Fruits: Fr, produced fruits at least once, NFr, no fruits observed.<br>The data are provided in three different file formats (.pdf, .txt, and .xlsx) to maximize reusability.Citation for dataset:Penagos Zuluaga, J. C. 2024. Chapter 74 - <i>Ocotea oblonga:</i> a gynodioecious tree - Table S1 - Data for reproductive individuals of <i>Ocotea oblonga </i>censused from 2016 to 2019 in five plots located in BCI. Smithsonian Figshare. https://doi.org/10.25573/data.22775681
DOI: 10.25573/data.22775681.v1
title: Chapter 74 - <i>Ocotea oblonga:</i> a gynodioecious tree - Table S1 - Data for reproductive individuals of <i>Ocotea oblonga </i>censused from 2016 to 2019 in five plots located in BCI.

description: Table S1. Data for reproductive individuals of <i>Ocotea oblonga</i> censused from 2016 to 2019 in five plots located in BCI.<i>Ocotea oblonga </i>censused from 2016 to 2019 in five plots located in BCI.Online Supplementary Material forPenagos Zuluaga, J. C. 2024. <i>Ocotea oblonga:</i> a Gynodioecious Tree. In <i>The First 100 Years of Research on Barro Colorado: Plant and Ecosystem Science</i>, ed. H. C. Muller-Landau and S. J. Wright. Washington, DC: Smithsonian Institution Scholarly Press. https://doi.org/10.5479/si.26880841Plot: the name of the plot in which the tree is located.<br>Tag: the tree tag, a unique identifier within a given plot.<br>X and Y: the distance (m) from the origin (SW corner).<br>Sex: H, trees with hermaphroditic flowers, F: trees with female flowers.<br>Fruits: Fr, produced fruits at least once, NFr, no fruits observed.<br>The data are provided in three different file formats (.pdf, .txt, and .xlsx) to maximize reusability.Citation for dataset:Penagos Zuluaga, J. C. 2024. Chapter 74 - <i>Ocotea oblonga:</i> a gynodioecious tree - Table S1 - Data for reproductive individuals of <i>Ocotea oblonga </i>censused from 2016 to 2019 in five plots located in BCI. Smithsonian Figshare. https://doi.org/10.25573/data.22775681
DOI: 10.25345/c5542jm6s
title: MassIVE MSV000096491 - GNPS - Project Rad Alder Metabolomes
title: A reciprocal transplant experiment using leaf packs composed of 10 red alder genotypes with resident presence and absence (gamma-irradiated [25 kGy]) to directly test how leaf-associated residents affect aquatic decomposer community composition and functional assembly, and metabolomic profiles over time. Samples were run in a Kinetex Polar C18 (2.6 um, 50 x 2.1 mm).
DOI: 10.6073/pasta/6957cf577776d39845ffef077a590cfc
title: Leaf litter, soil, and periphyton gene expression along freshwater to marine gradients in Everglades National Park (FCE LTER), Florida, USA, January 2021 and April 2021

description: We collected leaf litter, periphyton, and soil along freshwater to marine gradients at SRS-2, SRS-4, SRS-6, TS/PH-2, TS/Ph-3, TS/Ph-7a, and TS/Ph-10. Samples were collected in January and April of 2021 to understand how microbial communities respond to and influence the breakdown of organic matter along freshwater to marine transects. Data collection for this project is complete. 
 For each site and litter pair we collected a subset of 2-3 g wet mass of litter, a grab sample of soil, and a grab sample of periphyton for each site. All subsamples were preserved at -20°C until extraction, which took place up to a year after initial collection. Samples were sent to Novogene (Novogene Co. Ltd., Beijing, China) for the total RNA extraction followed by metatranscriptome sequencing. 
 We selected n = 12 genes/gene families encoding for focal enzymes to investigate which are important to the breakdown of organic matter: Dioxygenases (associated with aerobic respiration), Sulfatases (associated with the release of sulfates from complex molecules), sulfite reductases (associated with sulfite reduction), methyl coenzyme M reductase and formylmethanofuran (associated with methanogenesis), nitrite reductases (associated with nitrite reduction), cellobiosidase, glucosidase, and xylosidase (associated with cellulose breakdown), phenol oxidase (associated with lignin breakdown), acid phosphatase (associated with phosphate acquisition in acidic environments), and alkaline phosphatase (associated with phosphate acquisition in basic environments). For each gene/family of interest, we searched all annotated transcripts for all entries corresponding to that gene/family and combined all values for a total expression.
 We selected n = 6 monophyletic microbial functional groups, representing sulfate reducers, sulfate oxidizers, methane oxidizers, methanogens, nitrite oxidizers, and ammonia oxidizers associated with sulfate and methane cycling. We filtered all annotated transcripts for all species with the following in the name: in the name: ‘desulfo’ for sulfate reducers, ‘sulfito’ for sulfite oxidizers, ‘methylo’ for methyl/methane oxidizers, ‘methano’ for methanogens, ‘nitro’ for nitrite oxidizers, and ‘nitroso’ for aerobic ammonia oxidizers.
DOI: 10.15468/dl.azwycq
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ferreyranthus excelsus (Poepp. & Endl.) H.Rob. & Brettell"
 ]
}

 The dataset includes 124 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026852-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fmb8k3
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "DatasetKey is NMNH Extant Specimen Records (USNM, US)",
 "OccurrenceStatus is Present",
 "TaxonKey is Allobates zaparo (Silverstone, 1976)"
 ]
}

 The dataset includes 71 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026854-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7jag9a
title: Occurrence Download

description: A dataset containing 1341 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podocnemis lewyana Duméril, 1852"
 ]
}

 The dataset includes 1341 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026853-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25573/data.22720522
title: Chapter 83 - Epiphyte research on BCI - Table S1 - Updated list of epiphyte species on BCI.

description: Table S1 - Updated list of epiphyte species on BCI.Online Supplementary Material forZotz, G. 2024. Epiphyte Research on BCI. Chapter 83 in <i>The First 100 Years of Research on Barro Colorado: Plant and Ecosystem Science</i>, ed. H. C. Muller-Landau and S. J. Wright: Smithsonian Institution Scholarly Press. https://doi.org/10.5479/si.26880865Citation for dataset:Zotz, G. 2024. Chapter 83 - Epiphyte research on BCI - Table S1 - Updated list of epiphyte species on BCI. Smithsonian Figshare. https://doi.org/10.25573/data.22720522
DOI: 10.25573/data.22720522.v1
title: Chapter 83 - Epiphyte research on BCI - Table S1 - Updated list of epiphyte species on BCI.

description: Table S1 - Updated list of epiphyte species on BCI.Online Supplementary Material forZotz, G. 2024. Epiphyte Research on BCI. Chapter 83 in <i>The First 100 Years of Research on Barro Colorado: Plant and Ecosystem Science</i>, ed. H. C. Muller-Landau and S. J. Wright: Smithsonian Institution Scholarly Press. https://doi.org/10.5479/si.26880865Citation for dataset:Zotz, G. 2024. Chapter 83 - Epiphyte research on BCI - Table S1 - Updated list of epiphyte species on BCI. Smithsonian Figshare. https://doi.org/10.25573/data.22720522
DOI: 10.15468/dl.sqwpxa
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "DatasetKey is Museum of Comparative Zoology, Harvard University",
 "OccurrenceStatus is Present",
 "TaxonKey is Amazilia fimbriata (J.F.Gmelin, 1788)"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026855-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jsdvng
title: Occurrence Download

description: A dataset containing 320 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eryngium longifolium Cav."
 ]
}

 The dataset includes 320 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026856-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.