cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12955987
title: Additional file 6 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 6. All genes expressed in the study, with respective FPKM (Fragments per kilo base per million mapped reads) value in each sample.
DOI: 10.6084/m9.figshare.12955978
title: Additional file 3 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 3. List of differentially expressed genes between Majorera Control vs. Majorera Restricted. The Log2 Fold Change (Log2FC), Log2 of counts per million (Log2Counts), calculated P-value and FDR is shown. Raw reads for each gene in each sample are described: Majorera Control (MC1, MC2 and MC3) and Majorera Restricted (ME1, ME2 and ME3).
DOI: 10.6084/m9.figshare.12955978.v1
title: Additional file 3 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 3. List of differentially expressed genes between Majorera Control vs. Majorera Restricted. The Log2 Fold Change (Log2FC), Log2 of counts per million (Log2Counts), calculated P-value and FDR is shown. Raw reads for each gene in each sample are described: Majorera Control (MC1, MC2 and MC3) and Majorera Restricted (ME1, ME2 and ME3).
DOI: 10.6084/m9.figshare.12955987.v1
title: Additional file 6 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 6. All genes expressed in the study, with respective FPKM (Fragments per kilo base per million mapped reads) value in each sample.
DOI: 10.6084/m9.figshare.12955969
title: Additional file 12 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 12 – Output of the edgeR analysis for the Majorera Restricted and Palmera Restricted groups comparison. The Log2 Fold Change (Log2FC), Log2 of counts per million (Log2Counts), calculated P-value and FDR is shown. Raw reads for each gene in each sample are described: Majorera Restricted (ME1, ME2 and ME3) and Palmera Restricted (PE1, PE2 and PE3). NCBI gene and transcript IDs are provided. Only genes with Log2FC &gt; 0.5 or Log2FC
DOI: 10.6084/m9.figshare.12955984.v1
title: Additional file 5 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 5. - List of differentially expressed genes between Majorera Restricted vs. Palmera Restricted. The Log2 Fold Change (Log2FC), Log2 of counts per million (Log2Counts), calculated P-value and FDR is shown. Raw reads for each gene in each sample are described: Majorera Restricted (ME1, ME2 and ME3) and Palmera Restricted (PE1, PE2 and PE3).
DOI: 10.6084/m9.figshare.12955969.v1
title: Additional file 12 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 12 – Output of the edgeR analysis for the Majorera Restricted and Palmera Restricted groups comparison. The Log2 Fold Change (Log2FC), Log2 of counts per million (Log2Counts), calculated P-value and FDR is shown. Raw reads for each gene in each sample are described: Majorera Restricted (ME1, ME2 and ME3) and Palmera Restricted (PE1, PE2 and PE3). NCBI gene and transcript IDs are provided. Only genes with Log2FC &gt; 0.5 or Log2FC
DOI: 10.6084/m9.figshare.12955990.v1
title: Additional file 7 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 7. Tables summarizing the orthologous groups for each DE gene found in the main comparisons established (obtained via Blast2GO, Cluster of orthologs e-Value 1e-3).
DOI: 10.6084/m9.figshare.12955981.v1
title: Additional file 4 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 4. List of differentially expressed genes between Palmera Control vs. Palmera Restricted. The Log2 Fold Change (Log2FC), Log2 of counts per million (Log2Counts), calculated P-value and FDR is shown. Raw reads for each gene in each sample are described: Palmera Control (PC1, PC2 and PC3) and Palmera Restricted (PE1, PE2 and PE3).
DOI: 10.6084/m9.figshare.12955993
title: Additional file 8 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 8. – Details of the primers built for reference and candidate genes to be used in RT-qPCR, expression values from RNA-Seq and qPCR used for expression profiling and correlation analysis.
DOI: 10.6084/m9.figshare.12955993.v1
title: Additional file 8 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 8. – Details of the primers built for reference and candidate genes to be used in RT-qPCR, expression values from RNA-Seq and qPCR used for expression profiling and correlation analysis.
DOI: 10.6084/m9.figshare.12955996.v1
title: Additional file 9 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 9. – Output of the edgeR analysis for the Majorera Control and Majorera Restricted comparison. The Log2 Fold Change (Log2FC), Log2 of counts per million (Log2Counts), calculated P-value and FDR is shown. Raw reads for each gene in each sample are described: Majorera Control (MC1, MC2 and MC3) and Majorera Restricted (ME1, ME2 and ME3). NCBI gene and transcripts IDs are provided. Only genes with Log2FC &gt; 0.5 or Log2FC
DOI: 10.6084/m9.figshare.12955984
title: Additional file 5 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 5. - List of differentially expressed genes between Majorera Restricted vs. Palmera Restricted. The Log2 Fold Change (Log2FC), Log2 of counts per million (Log2Counts), calculated P-value and FDR is shown. Raw reads for each gene in each sample are described: Majorera Restricted (ME1, ME2 and ME3) and Palmera Restricted (PE1, PE2 and PE3).
DOI: 10.6084/m9.figshare.12955963
title: Additional file 10 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 10. – Output of the edgeR analysis for the Palmera Control and Palmera Restricted comparison. The Log2 Fold Change (Log2FC), Log2 of counts per million (Log2Counts), calculated P-value and FDR is shown. Raw reads for each gene in each sample are described: Palmera Control (PC1, PC2 and PC3) and Palmera Restricted (PE1, PE2 and PE3). NCBI gene and transcripts IDs are provided. Only genes with Log2FC &gt; 0.5 or Log2FC
DOI: 10.6084/m9.figshare.12955996
title: Additional file 9 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 9. – Output of the edgeR analysis for the Majorera Control and Majorera Restricted comparison. The Log2 Fold Change (Log2FC), Log2 of counts per million (Log2Counts), calculated P-value and FDR is shown. Raw reads for each gene in each sample are described: Majorera Control (MC1, MC2 and MC3) and Majorera Restricted (ME1, ME2 and ME3). NCBI gene and transcripts IDs are provided. Only genes with Log2FC &gt; 0.5 or Log2FC
DOI: 10.6084/m9.figshare.12955990
title: Additional file 7 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 7. Tables summarizing the orthologous groups for each DE gene found in the main comparisons established (obtained via Blast2GO, Cluster of orthologs e-Value 1e-3).
DOI: 10.6084/m9.figshare.12956008
title: Additional file 2 of Costing malaria interventions from pilots to elimination programmes

description: Additional file 2. Reference implementation scenarios detailing operational assumptions by intervention. A large Excel table that details by intervention resource lists and quantities of resources costed for each operational activity across all implementation stages (i.e. from the initial micro-planning on the new intervention to evaluation). The table offers a descriptive intervention narrative to aid in interpretation of the cost estimates derived here.
DOI: 10.6084/m9.figshare.12956008.v1
title: Additional file 2 of Costing malaria interventions from pilots to elimination programmes

description: Additional file 2. Reference implementation scenarios detailing operational assumptions by intervention. A large Excel table that details by intervention resource lists and quantities of resources costed for each operational activity across all implementation stages (i.e. from the initial micro-planning on the new intervention to evaluation). The table offers a descriptive intervention narrative to aid in interpretation of the cost estimates derived here.
DOI: 10.6084/m9.figshare.12955966
title: Additional file 11 of Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach

description: Additional file 11 – Output of the edgeR analysis for the Majorera Control and Palmera Control groups comparison. The Log2 Fold Change (Log2FC), Log2 of counts per million (Log2Counts), calculated P-value and FDR is shown. Raw reads for each gene in each sample are described: Majorera Control (MC1, MC2 and MC3) and Palmera Control (PC1, PC2 and PC3). NCBI gene and transcripts IDs are provided. Only genes with Log2FC &gt; 0.5 or Log2FC
DOI: 10.6084/m9.figshare.12956014.v1
title: Additional file 4 of Costing malaria interventions from pilots to elimination programmes

description: Additional file 4. Costing models by intervention and scope. The folder contains Stata do-files that detail how operational details as per Additional file 1, are combined with information on prices and quantities of resources collated in Additional file 2 to produce and estimate of intervention costs. The files can be run together with the datasets in Additional file 2 to reproduce estimates presented in the manuscript. The files can be used to also model alternative implementation of interventions or produce estimates for settings other than the reference.
DOI: 10.6084/m9.figshare.12956011
title: Additional file 3 of Costing malaria interventions from pilots to elimination programmes

description: Additional file 3. Costing model inputs database. An Excel table that contains resource lists, respective prices and quantities for each intervention (tabs RR to IRS) that serve as inputs to the costing models (Stata do-files) shared in Additional file 3. For each micro-input the table gives the reference value associated with the reference implementation scenario, minimum and maximum value of the parameter, a flag that denotes how the parameter was treated in sensitivity analysis (i.e. varied within the range or according to the multiplier), resource category grouping matching Fig. 2, parameter label, units, description, and source of data. Additionally, tab “sensitivity” gives multiplier range for each parameter and grouping. Tab “archetypes” gives values of operational and setting inputs by setting archetype.
DOI: 10.6084/m9.figshare.12956015
title: Additional file 6 of On data reduction methods for volcanic tremor characterization: the 2012 eruption of Copahue volcano, Southern Andes

description: Additional file 6. List of 52 long-duration events. A table with the characteristics of the 52 long-duration events.
DOI: 10.6084/m9.figshare.12956014
title: Additional file 4 of Costing malaria interventions from pilots to elimination programmes

description: Additional file 4. Costing models by intervention and scope. The folder contains Stata do-files that detail how operational details as per Additional file 1, are combined with information on prices and quantities of resources collated in Additional file 2 to produce and estimate of intervention costs. The files can be run together with the datasets in Additional file 2 to reproduce estimates presented in the manuscript. The files can be used to also model alternative implementation of interventions or produce estimates for settings other than the reference.
DOI: 10.6084/m9.figshare.12956011.v1
title: Additional file 3 of Costing malaria interventions from pilots to elimination programmes

description: Additional file 3. Costing model inputs database. An Excel table that contains resource lists, respective prices and quantities for each intervention (tabs RR to IRS) that serve as inputs to the costing models (Stata do-files) shared in Additional file 3. For each micro-input the table gives the reference value associated with the reference implementation scenario, minimum and maximum value of the parameter, a flag that denotes how the parameter was treated in sensitivity analysis (i.e. varied within the range or according to the multiplier), resource category grouping matching Fig. 2, parameter label, units, description, and source of data. Additionally, tab “sensitivity” gives multiplier range for each parameter and grouping. Tab “archetypes” gives values of operational and setting inputs by setting archetype.
DOI: 10.6084/m9.figshare.12956071
title: Additional file 10 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 10. OTUs found to differ between baseline and later timepoints in C57BL/6J mice following exposure to TMS PO. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956071.v1
title: Additional file 10 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 10. OTUs found to differ between baseline and later timepoints in C57BL/6J mice following exposure to TMS PO. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956074.v1
title: Additional file 11 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 11. OTUs found to differ between baseline and later timepoints in C57BL/6J mice following exposure to enrofloxacin PO. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956074
title: Additional file 11 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 11. OTUs found to differ between baseline and later timepoints in C57BL/6J mice following exposure to enrofloxacin PO. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956080.v1
title: Additional file 13 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 13. OTUs found to differ between baseline and later timepoints in C57BL/6J mice following exposure to topical TAB. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956077.v1
title: Additional file 12 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 12. OTUs found to differ between baseline and later timepoints in C57BL/6J mice following exposure to enrofloxacin IP. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956077
title: Additional file 12 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 12. OTUs found to differ between baseline and later timepoints in C57BL/6J mice following exposure to enrofloxacin IP. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956083
title: Additional file 14 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 14. OTUs found to differ between baseline and later timepoints in untreated control C57BL/6J mice. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956083.v1
title: Additional file 14 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 14. OTUs found to differ between baseline and later timepoints in untreated control C57BL/6J mice. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956101
title: Additional file 6 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 6. OTUs found to differ between baseline and later timepoints in C57BL/6NHsd mice following exposure to TMS PO. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956080
title: Additional file 13 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 13. OTUs found to differ between baseline and later timepoints in C57BL/6J mice following exposure to topical TAB. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956104.v1
title: Additional file 7 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 7. OTUs found to differ between baseline and later timepoints in C57BL/6NHsd mice following exposure to enrofloxacin PO. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956101.v1
title: Additional file 6 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 6. OTUs found to differ between baseline and later timepoints in C57BL/6NHsd mice following exposure to TMS PO. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956107.v1
title: Additional file 8 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 8. OTUs found to differ between baseline and later timepoints in C57BL/6NHsd mice following exposure to enrofloxacin IP. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956104
title: Additional file 7 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 7. OTUs found to differ between baseline and later timepoints in C57BL/6NHsd mice following exposure to enrofloxacin PO. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956110
title: Additional file 9 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 9. OTUs found to differ between baseline and later timepoints in C57BL/6NHsd mice following exposure to topical TAB. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956110.v1
title: Additional file 9 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 9. OTUs found to differ between baseline and later timepoints in C57BL/6NHsd mice following exposure to topical TAB. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956107
title: Additional file 8 of Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

description: Additional file 8. OTUs found to differ between baseline and later timepoints in C57BL/6NHsd mice following exposure to enrofloxacin IP. Phylum, family, and best taxonomic resolution (Taxonomy) are provided, along with the FDR-adjusted p value, and the relative abundance of that taxa relative to baseline immediately post-treatment (post) and four weeks post-treatment (4w).
DOI: 10.6084/m9.figshare.12956138.v1
title: Additional file 2 of Independent glial subtypes delay development and extend healthy lifespan upon reduced insulin-PI3K signalling

description: Additional file 2. Raw data for lifespan experiments.
DOI: 10.6084/m9.figshare.12956138
title: Additional file 2 of Independent glial subtypes delay development and extend healthy lifespan upon reduced insulin-PI3K signalling

description: Additional file 2. Raw data for lifespan experiments.