cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12470291
title: Table S4 : Final set of consistently divergent CNVs between Choosy and Non-Choosy populations from The role of copy-number variation in the reinforcement of sexual isolation between the two European subspecies of the house mouse

description: this file is in .txt format
DOI: 10.6084/m9.figshare.12470297.v1
title: Table S2 : Consistently divergent CNVs in the Focal Test from The role of copy-number variation in the reinforcement of sexual isolation between the two European subspecies of the house mouse

description: this file is in .txt format
DOI: 10.6084/m9.figshare.12470288
title: Table S1 from Genome-wide patterns of divergence and introgression after secondary contact between <i>Pungitius</i> sticklebacks

description: Calculation of the strength of isolating barriers.
DOI: 10.6084/m9.figshare.12470291.v1
title: Table S4 : Final set of consistently divergent CNVs between Choosy and Non-Choosy populations from The role of copy-number variation in the reinforcement of sexual isolation between the two European subspecies of the house mouse

description: this file is in .txt format
DOI: 10.6084/m9.figshare.12470294.v1
title: Table S3 from Genome-wide patterns of divergence and introgression after secondary contact between <i>Pungitius</i> sticklebacks

description: Re-sequenced samples.
DOI: 10.6084/m9.figshare.12470315.v3
title: Mathematica notebook from The limits to parapatric speciation 3: Evolution of strong reproductive isolation in presence of gene flow despite limited ecological differentiation

description: Gene flow tends to impede the accumulation of genetic divergence. Here, we determine the limits for the evolution of postzygotic reproductive isolation in a model of two populations that are connected by gene flow. We consider two selective mechanisms for the creation and maintenance of a genetic barrier: local adaptation leads to divergence among incipient species due to selection against migrants, and Dobzhansky–Muller incompatibilities (DMIs) reinforce the genetic barrier through selection against hybrids. In particular, we are interested in the maximum strength of the barrier under a limited amount of local adaptation, a challenge that many incipient species may initially face. We first confirm that with classical two-locus DMIs, the maximum amount of local adaptation is indeed a limit to the strength of a genetic barrier. However, with three or more loci and cryptic epistasis, this limit holds no longer. In particular, we identify a minimal configuration of three epistatically interacting mutations that is sufficient to confer strong reproductive isolation.This article is part of the theme issue ‘Towards the completion of speciation: the evolution of reproductive isolation beyond the first barriers’.
DOI: 10.6084/m9.figshare.12470285
title: Table S7 from Genome-wide patterns of divergence and introgression after secondary contact between <i>Pungitius</i> sticklebacks

description: Rank order of <i>F</i><sub>ST</sub> between sympatric stickleback species.
DOI: 10.6084/m9.figshare.12470288.v1
title: Table S1 from Genome-wide patterns of divergence and introgression after secondary contact between <i>Pungitius</i> sticklebacks

description: Calculation of the strength of isolating barriers.
DOI: 10.6084/m9.figshare.12470282
title: Table S6 from Genome-wide patterns of divergence and introgression after secondary contact between <i>Pungitius</i> sticklebacks

description: Migration rates between sympatric stickleback species.
DOI: 10.6084/m9.figshare.12470285.v1
title: Table S7 from Genome-wide patterns of divergence and introgression after secondary contact between <i>Pungitius</i> sticklebacks

description: Rank order of <i>F</i><sub>ST</sub> between sympatric stickleback species.
DOI: 10.6084/m9.figshare.12470252
title: ESM File 6: <b>LPSmaster_wCOLUMNKEY_052220</b> from Flexibility in an emergency life-history stage: acute food deprivation prevents sickness behaviour but not the immune response

description: Data file, column descriptions provided in Tab 1, data contained in Tab 2
DOI: 10.6084/m9.figshare.12470246
title: ESM File 2: <b>Supplementary Materials_Reanalysis</b> from Flexibility in an emergency life-history stage: acute food deprivation prevents sickness behaviour but not the immune response

description: Contains tabs detailing calculation of residual CORT and results from reanalysis using residual CORT.
DOI: 10.6084/m9.figshare.12470252.v2
title: ESM File 6: <b>LPSmaster_wCOLUMNKEY_052220</b> from Flexibility in an emergency life-history stage: acute food deprivation prevents sickness behaviour but not the immune response

description: Data file, column descriptions provided in Tab 1, data contained in Tab 2
DOI: 10.6084/m9.figshare.12470240
title: ESM File 3: <b>Supplementary Tables</b> from Flexibility in an emergency life-history stage: acute food deprivation prevents sickness behaviour but not the immune response

description: Contains Supplementary Tables, captions included in File 1
DOI: 10.6084/m9.figshare.12470246.v2
title: ESM File 2: <b>Supplementary Materials_Reanalysis</b> from Flexibility in an emergency life-history stage: acute food deprivation prevents sickness behaviour but not the immune response

description: Contains tabs detailing calculation of residual CORT and results from reanalysis using residual CORT.
DOI: 10.6084/m9.figshare.12470252.v1
title: ESM File 6: <b>LPSmaster_wCOLUMNKEY_052220</b> from Flexibility in an emergency life-history stage: acute food deprivation prevents sickness behaviour but not the immune response

description: Data file, column descriptions provided in Tab 1, data contained in Tab 2
DOI: 10.6084/m9.figshare.12470246.v1
title: ESM File 2: <b>Supplementary Materials_Reanalysis</b> from Flexibility in an emergency life-history stage: acute food deprivation prevents sickness behaviour but not the immune response

description: Contains tabs detailing calculation of residual CORT and results from reanalysis using residual CORT.
DOI: 10.6084/m9.figshare.12470240.v2
title: ESM File 3: <b>Supplementary Tables</b> from Flexibility in an emergency life-history stage: acute food deprivation prevents sickness behaviour but not the immune response

description: Contains Supplementary Tables, captions included in File 1
DOI: 10.6084/m9.figshare.12470282.v3
title: Table S5 from Genome-wide patterns of divergence and introgression after secondary contact between <i>Pungitius</i> sticklebacks

description: Gene ontology terms enriched at the putatively introgression sites.
DOI: 10.6084/m9.figshare.12470240.v1
title: ESM File 3: <b>Supplementary Tables</b> from Flexibility in an emergency life-history stage: acute food deprivation prevents sickness behaviour but not the immune response

description: Contains Supplementary Tables, captions included in File 1
DOI: 10.6084/m9.figshare.12470282.v4
title: Table S4 from Genome-wide patterns of divergence and introgression after secondary contact between <i>Pungitius</i> sticklebacks

description: Mapping rate for sympatric <i>P. sinensis</i> and <i>P. pungitius</i>.
DOI: 10.6084/m9.figshare.12470282.v5
title: Table S2. from Genome-wide patterns of divergence and introgression after secondary contact between <i>Pungitius</i> sticklebacks

description: De novo genome assembly of <i>Pungitius sinensis</i>.
DOI: 10.6084/m9.figshare.12470204
title: SRR11862870

description: Raw data of sequencing<br>
DOI: 10.6084/m9.figshare.12470189
title: Data_Seismic line 1

description: The six sequence boudnaries interpreted from the seismic reflection profile 1The sesimic interpreted and gravity modelled Moho and crustal thickness
DOI: 10.6084/m9.figshare.12470204.v1
title: SRR11862870

description: Raw data of sequencing<br>
DOI: 10.6084/m9.figshare.12470282.v10
title: Table S3 from Genome-wide patterns of divergence and introgression after secondary contact between <i>Pungitius</i> sticklebacks

description: Re-sequenced samples.
DOI: 10.6084/m9.figshare.12470057
title: Dataset for Deng's 2020 JGR paper

description: Dataset 1. All repeating earthquakes (CC≥0.9) found in this study (Format: Date, Time, Latitude, Longitude, Depth, Magnitude, Type, ID, Cluster_name, Nbranch). Dataset 2. The events before and after relocation at region 1. (Format: yr, mon, day, hr, min, sec, eID, latR, lonR, depR, mag, qID, cID, nbranch, qnpair, qndiffP, qndiffS, rmsP, rmsS, eh, ez, et, latC, lonC, depC) Dataset 3. The events before and after relocation at region 3. (Format: yr, mon, day, hr, min, sec, eID, latR, lonR, depR, mag, qID, cID, nbranch, qnpair, qndiffP, qndiffS, rmsP, rmsS, eh, ez, et, latC, lonC, depC)Dataset 4. Repeating earthquakes with CC≥0.95 found in this study (Format: Date, Time, Latitude, Longitude, Depth, Magnitude, Type, ID, Cluster_name, Nbranch).
DOI: 10.6084/m9.figshare.12470282.v11
title: Table S7 from Genome-wide patterns of divergence and introgression after secondary contact between <i>Pungitius</i> sticklebacks

description: Rank order of <i>F</i><sub>ST</sub> between sympatric stickleback species.
DOI: 10.6084/m9.figshare.12470048
title: JARVIS-DFT Wannier tight binding Hamiltonians for 2D materials

description: In this work, we develop a computational workflow for high-throughput Wannierization of density functional theory (DFT) based electronic band structure calculations. We apply this workflow to 1771 materials, and we create a database with the resulting Wannier-function based tight binding Hamiltonians (WTBH). We evaluate the accuracy of the WTBHs by comparing the Wannier band structures to directly calculated DFT band structures on both the set of k-points used in the Wannierization as well as independent k-points from high symmetry lines. Accurate WTBH can be used for the calculation of many materials properties, and we include a few example applications. We also develop a web-app that can be used to predict electronic properties on-the-fly using WTBH from our database. The tools to generate the Hamiltonian and the database of the WTB parameters will be made publicly available through the websites https://github.com/usnistgov/jarvis and https://www.ctcms.nist.gov/jarviswtb.
DOI: 10.6084/m9.figshare.12470282.v13
title: Table S6 from Genome-wide patterns of divergence and introgression after secondary contact between <i>Pungitius</i> sticklebacks

description: Migration rates between sympatric stickleback species.
DOI: 10.6084/m9.figshare.12470036
title: hand grip strength as a discriminator of sarcopenia and sarcopenic obesity.xls

description: Database manuscript, “Hand grip strength as a discriminator of sarcopenia and sarcopenic obesity. The Brazilian Longitudinal Study of Adult Health (ELSA-Brasil)”
DOI: 10.6084/m9.figshare.12470282.v12
title: Table S1 from Genome-wide patterns of divergence and introgression after secondary contact between <i>Pungitius</i> sticklebacks

description: Calculation of the strength of isolating barriers.
DOI: 10.6084/m9.figshare.12470036.v1
title: hand grip strength as a discriminator of sarcopenia and sarcopenic obesity.xls

description: Database manuscript, “Hand grip strength as a discriminator of sarcopenia and sarcopenic obesity. The Brazilian Longitudinal Study of Adult Health (ELSA-Brasil)”
DOI: 10.6084/m9.figshare.12470045.v1
title: Prospective profile of 116 men with penile cancer in Maranhão (2004 - 2014)

description: Databank of the profile of 116 men with penile cancer in Maranhão – Northeast Brazil (2004 - 2014)
DOI: 10.6084/m9.figshare.12469997
title: Tunable_Assembly-2020

description: withdrawed
DOI: 10.6084/m9.figshare.12470030.v1
title: Retrospective profile of 286 men with penile cancer in Maranhão (2016 - 2018)

description: Databank of the profile of 286 men with penile cancer in Maranhão – Northeast Brazil (2016 - 2018)<br>
DOI: 10.6084/m9.figshare.12470030.v2
title: Retrospective profile of 286 men with penile cancer in Maranhão (2016 - 2018)

description: Databank of the profile of 286 men with penile cancer in Maranhão – Northeast Brazil (2016 - 2018)<br>
DOI: 10.6084/m9.figshare.12470045.v2
title: Prospective profile of 116 men with penile cancer in Maranhão (2004 - 2014)

description: Databank of the profile of 116 men with penile cancer in Maranhão – Northeast Brazil (2004 - 2014)
DOI: 10.6084/m9.figshare.12469997.v2
title: Tunable_Assembly-2020

description: withdrawed
DOI: 10.6084/m9.figshare.12469997.v1
title: Tunable_Assembly_of_Hybrid_Colloids-NatureMat-2020

description: source data in supporting of the manuscript of "Tunable Assembly of Hybrid Colloids Induced by Regioselective Depletion".
DOI: 10.6084/m9.figshare.12469253
title: Table2NormalityTest.xlsx

description: <b>Normality test for each variable</b><br>
DOI: 10.6084/m9.figshare.12469253.v1
title: Table2NormalityTest.xlsx

description: <b>Normality test for each variable</b><br>
DOI: 10.23641/asha.12469187
title: Global coherence in aphasia during conversation (Leaman & Edmonds, 2020)

description: <b>Purpose: </b>Global coherence is an essential macrolinguistic discourse skill that speakers use to formulate discourse to convey meaning with maintenance to a topic. When global coherence is poor, the listener’s ability to understand how the discourse makes sense as a whole is diminished. Measures exist to evaluate global coherence in people with aphasia during monologue tasks (e.g., picture description). The aim of the current research is to develop such a measure for unstructured conversation and to explore how global coherence is impacted by aphasia during conversation. A global coherence measure for conversation is required because markedly different cognitive and linguistic demands are made for production of different types of discourse. Thus, a structured monologue measure cannot be used with validity for unstructured conversation. To adequately evaluate global coherence during conversation, a measure specific to the demands of conversation is required.<b>Method: </b>We adapted the 4-point Global Coherence Scale (Wright & Capilouto, 2012; Wright et al., 2013), a monologue-level measure of global coherence to conversation, resulting in the 4-point Global Coherence Scale in unstructured conversation (GCSconv). We conducted statistical evaluation of the reliability/stability of the 4-point GCSconv in 18 unstructured conversations held by nine people with aphasia. Utterances with low global coherence scores were classified following a recent methodology to describe how breakdown in these utterances contributed to diminished global coherence (Hazamy & Obermeyer, 2019).<b>Results:</b> The 4-point GCSconv demonstrated excellent inter/intrarater reliability and test–retest stability. Nonspecific language and off-topic comments contributed most frequently to lowered global coherence.<b>Conclusions:</b> Findings suggest the 4-point GCSconv may be a feasible and reliable measure of global coherence in conversation. This measure adds to a core of emerging reliable discourse measures for conversation. As such, it has potential to inform assessment and treatment of everyday conversation and to investigate the relationship of global coherence in structured monologue and unstructured conversation.<br><b>Supplemental Material S1.</b> 4-point GCSconv interrater reliability data for varied sampling methodologies. <br><b>Supplemental Material S2. </b>Individual 4-point GCSconv scores.<br><b>Supplemental Material S3.</b> Coded conversational excerpt with comments.<br>Leaman, M. C., & Edmonds, L. A. (2020). Measuring global coherence in people with aphasia during unstructured conversation. <i>American Journal of Speech-Language Pathology. </i>Advance online publication. https://doi.org/10.1044/2020_AJSLP-19-00104<br><b>Publisher Note: </b>This article is part of the Special Issue: Select Papers From the 49th Clinical Aphasiology Conference.<br>
DOI: 10.6084/m9.figshare.12469148
title: Percent_diffs_codon_usage_spike_non_spikeV3.csv

description: Updated dataset % differences in codon usage between spike gene and all other genes from 5064 sequences compared to reference sequence. Corrected references.<br>
DOI: 10.6084/m9.figshare.12469118

description: Students submitted their availability to me and I compiled them into this spreadsheet.
DOI: 10.6084/m9.figshare.12469103
title: Data Diaz-Siefer et al pheromone sentinel experiment

description: Dataset from a sentinel experiment using artificial larvae, with and without insect pheromones, to assess bird attack
DOI: 10.6084/m9.figshare.12469103.v1
title: Data Diaz-Siefer et al pheromone sentinel experiment

description: Dataset from a sentinel experiment using artificial larvae, with and without insect pheromones, to assess bird attack
DOI: 10.6084/m9.figshare.12469052
title: A comparison of two neighborhood-level socioeconomic indexes in the United States: raw data and R code

description: Here are the raw data and R code used in the paper "A comparison of two neighborhood-level socioeconomic indices in the United States" by Boscoe and Li currently under review. The raw data and data dictionary are exactly as they were obtained from the National Historical Geographic Information System (NHGIS). The data comprise the 7 American Community Survey variables used to construct the Yost Index at the block group level for the period 2011-2015. <br>
DOI: 10.6084/m9.figshare.12469055
title: Harlequin Frogs (Lysapsus) prefer mild places to park

description: Temperature affects most aspects of ectotherms’ life history, including physiology and behavior. Studying thermal sensitivity of jumping performance in frogs can help understanding the influence of temperature on different aspects of frog life. Still, studies on the effects of temperature on amphibians are commonly carried out on terrestrial and tree species, creating a gap for aquatic species. We experimentally tested the thermal sensitivity of jumping performance of the Uruguay Harlequin Frog, <i>Lysapsus limellum</i>, assessing three measures: response time, distance of first jump, and total distance travelled. We hypothesized that individuals submitted to extreme temperatures would increase response time, decrease first jump distance, and increase total jump distance. We used an arena with a gradient of air temperature (T<sub>a</sub>) ranging from 20 to 40 ºC. We placed frogs at different T<sub>a</sub> and stimulated them to jump. Then, we analysed the influence of T<sub>a</sub> on the three estimates of jumping performance, using generalized additive models. We found that temperature affected all three measurements of jumping performance, but some relationships were stronger than others. Extreme temperatures increased response time, reduced first jump distance, and increased total distance. The effect was weaker for response time and first jump distance, but substantially stronger for total distance jumped. Although individuals under extreme temperatures experience a reduced jumping performance, they travelled longer distances to find areas with milder temperatures. Thus, we showed that <i>L. limellum</i> thermoregulates by means of behavior, moving through places at different thermal conditions. Additionally, benefits of displacing to thermally suitable places -in terms of enhanced jumping performance- are bigger than the costs of jumping at reduced locomotor performance, at least under experimental conditions. Our results can help understand how climate change affects the locomotor performance of Neotropical amphibians.
DOI: 10.6084/m9.figshare.12468446
title: UPDATED percent differences in codon usage for spike and other genes (Version 2)

description: Updated dataset percent differences in codon usage spike and non-spike genes comparing to reference sequence of SARS-CoV-2. Fixed multiple grouping of different assemblies in same input files.<br>
DOI: 10.6084/m9.figshare.12469055.v1
title: Harlequin Frogs (Lysapsus) prefer mild places to park

description: Temperature affects most aspects of ectotherms’ life history, including physiology and behavior. Studying thermal sensitivity of jumping performance in frogs can help understanding the influence of temperature on different aspects of frog life. Still, studies on the effects of temperature on amphibians are commonly carried out on terrestrial and tree species, creating a gap for aquatic species. We experimentally tested the thermal sensitivity of jumping performance of the Uruguay Harlequin Frog, <i>Lysapsus limellum</i>, assessing three measures: response time, distance of first jump, and total distance travelled. We hypothesized that individuals submitted to extreme temperatures would increase response time, decrease first jump distance, and increase total jump distance. We used an arena with a gradient of air temperature (T<sub>a</sub>) ranging from 20 to 40 ºC. We placed frogs at different T<sub>a</sub> and stimulated them to jump. Then, we analysed the influence of T<sub>a</sub> on the three estimates of jumping performance, using generalized additive models. We found that temperature affected all three measurements of jumping performance, but some relationships were stronger than others. Extreme temperatures increased response time, reduced first jump distance, and increased total distance. The effect was weaker for response time and first jump distance, but substantially stronger for total distance jumped. Although individuals under extreme temperatures experience a reduced jumping performance, they travelled longer distances to find areas with milder temperatures. Thus, we showed that <i>L. limellum</i> thermoregulates by means of behavior, moving through places at different thermal conditions. Additionally, benefits of displacing to thermally suitable places -in terms of enhanced jumping performance- are bigger than the costs of jumping at reduced locomotor performance, at least under experimental conditions. Our results can help understand how climate change affects the locomotor performance of Neotropical amphibians.
DOI: 10.6084/m9.figshare.12468446.v1
title: UPDATED percent differences in codon usage for spike and other genes (Version 2)

description: Updated dataset percent differences in codon usage spike and non-spike genes comparing to reference sequence of SARS-CoV-2. Fixed multiple grouping of different assemblies in same input files.<br>
DOI: 10.6084/m9.figshare.12469052.v1
title: 2011-2015 American Community Survey data from NHGIS

description: These are the raw data used in the paper ""Comparison of two neighborhood-level socioeconomic indices in the United States" by Boscoe and Li currently in preparation, as downloaded from NHGIS, along with the data dictionary.<br>
DOI: 10.6084/m9.figshare.12466043
title: 16S rRNA partial gene sequences of the bacterial strain CC4533 (Sphingobium yanoikuyae PR86 strain variant partial 16S rRNA sequence; GenBank Accession # MN633285.1).

description: Dataset contains 2 abi extension files and corresponding sequence text files obtained from partial sequencing of the 16S rRNA gene of CC4533 strain (<i>Sphingobium yanoikuyae</i> PR86 strain variant). There are 2 electropherogram files and corresponding text files of DNA sequences in the dataset. The 16S rRNA gene was partially amplified from CC4533 and cloned in the TOPO-TA vector (Thermo Scientific Fisher) for DNA sequencing. Sanger dideoxy sequencing technology was used for DNA sequencing.<br>