cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.k3yp66
title: Occurrence Download

description: A dataset containing 7620 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ursus maritimus Phipps, 1774"
 ]
}

 The dataset includes 7620 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065844-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nqyh7m
title: Occurrence Download

description: A dataset containing 9403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fulica americana Gmelin, 1789",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9403 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004147-150316153013904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqmasn
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aspistes spathis (Cook, 1965)"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140926-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25wzg6
title: Occurrence Download

description: A dataset containing 6379 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Actitis macularia (Linnaeus, 1766)"
 ]
}

 The dataset includes 6379 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012866-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.typv9a
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Peromyscus simulus Osgood, 1904",
 "Country is Mexico",
 "Geometry POLYGON((-106.995849 23.130257,-106.995849 20.416716,-103.677978 20.416716,-103.677978 23.130257,-106.995849 23.130257))"
 ]
}

 The dataset includes 67 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004147-150410134957023/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v3uh43
title: Occurrence Download

description: A dataset containing 3161644 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Malaysia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3161644 records from 905 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198215-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gbhfr8
title: Occurrence Download

description: A dataset containing 346643 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Some Plant Specimens from KUN, IBSC, NAS Herbarium in China from 1900 to 1950"
 ]
}

 The dataset includes 346643 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025573-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqmqr5
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trillium nivale Riddell",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 32 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176127-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjn7k4
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cynometra lukei Beentje"
 ]
}

 The dataset includes 34 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015742-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4cnjl
title: Occurrence Download

description: A dataset containing 11833156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11833156 records from 1601 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025574-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.utn685
title: Occurrence Download

description: A dataset containing 229 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Callitriche hermaphroditica L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 229 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165667-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yns6ax
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cynometra minutiflora F.Muell."
 ]
}

 The dataset includes 12 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015773-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qpwsb9
title: Occurrence Download

description: A dataset containing 839 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Histriophoca fasciata (Zimmermann, 1783)"
 ]
}

 The dataset includes 839 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025575-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nb4qhp
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Euborellia stali (Dohrn, 1864))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034225-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3xxeph
title: Occurrence Download

description: A dataset containing 1184 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Lippia rotundifolia Cham., Lippia rubella (Moldenke) T.R.S.Silva & Salimena, Lippia rugosa A.Chev.)"
 ]
}

 The dataset includes 1184 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034224-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bckhca
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Lithothamnion japonicum Foslie, Lithothamnion kerguelenum (Dickie) Foslie, Lithothamnion labradorense Heydrich)"
 ]
}

 The dataset includes 40 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034226-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2vh4y3
title: Occurrence Download

description: A dataset containing 3828 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Euborellia annulipes (Lucas, 1847))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3828 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034227-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11246910
title: BOSHLANG'ICH SINF MATEMATIKA DARSLARIDA HARAKATLI O'YINLAR VA METODLAR ORQALI MASALALAR YECHISHGA O'RGATISH
DOI: 10.5281/zenodo.11246911
title: BOSHLANG'ICH SINF MATEMATIKA DARSLARIDA HARAKATLI O'YINLAR VA METODLAR ORQALI MASALALAR YECHISHGA O'RGATISH
DOI: 10.5281/zenodo.11246876
title: How well do we know the seasonal cycle in ocean bottom pressure?

description: Sa_harmonics.mat: Annual harmonics (amplitude and phase) calculated from ECCOv4r5, JPL GRACE, and GSFC GRACE data.

Ssa_harmonics.mat: Semiannual harmonics (amplitude and phase) calculated from ECCOv4r5, JPL GRACE, and GSFC GRACE data.

Sta_harmonics.mat: Terannual harmonics (amplitude and phase) calculated from ECCOv4r5, JPL GRACE, and GSFC GRACE data.

GAL_LA_Sa_std.mat: Standard deviation of annual harmonics for gravitational attraction and loading effects.

GAL_La_Ssa_std.mat: Standard deviation of semiannual harmonics for gravitational attraction and loading effects.

g0_getOBP.m: Script to read GSFC GRACE data and remove earthquake signals.

g1_fitcycleOBP.m: Script to calculate harmonics from bottom pressure data.

get_EQphase.m: Function that yields the phases for the equilibrium tide of the major tidal constituents from HW95 catalogue
DOI: 10.5281/zenodo.11246877
title: How well do we know the seasonal cycle in ocean bottom pressure?

description: Sa_harmonics.mat: Annual harmonics (amplitude and phase) calculated from ECCOv4r5, JPL GRACE, and GSFC GRACE data.

Ssa_harmonics.mat: Semiannual harmonics (amplitude and phase) calculated from ECCOv4r5, JPL GRACE, and GSFC GRACE data.

Sta_harmonics.mat: Terannual harmonics (amplitude and phase) calculated from ECCOv4r5, JPL GRACE, and GSFC GRACE data.

GAL_LA_Sa_std.mat: Standard deviation of annual harmonics for gravitational attraction and loading effects.

GAL_La_Ssa_std.mat: Standard deviation of semiannual harmonics for gravitational attraction and loading effects.

g0_getOBP.m: Script to read GSFC GRACE data and remove earthquake signals.

g1_fitcycleOBP.m: Script to calculate harmonics from bottom pressure data.

get_EQphase.m: Function that yields the phases for the equilibrium tide of the major tidal constituents from HW95 catalogue
DOI: 10.15468/dl.zfv3pu
title: Occurrence Download

description: A dataset containing 358 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Lobelia harrisii Urb., Lobelia hartlaubii Buchenau, Lobelia hartwegii Benth. ex A.DC.)"
 ]
}

 The dataset includes 358 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034230-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8492213
title: Global Fossil CO2 Emissions by Year
DOI: 10.6084/m9.figshare.24751755.v6
title: Oxygen-confined photooxidation represents a novel form of oxidative protein damage

description: The uploaded Excel files contain raw data for the paper. Refer to the Methods section for detailed data analysis.
DOI: 10.15468/dl.zvfs4f
title: Occurrence Download

description: A dataset containing 1318 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anisolabis maritima (Bonelli, 1832))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1318 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034232-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11246173
title: blase II: PHOENIX Subset Clone Archive

description: As part of our study, we cloned 1,314 individual PHOENIX spectra (Husser et al. 2013) with blase and optimized their line shapes with ML. These interpretable clones have been saved as state dictionaries in .pt files, which we upload here to be readily accessible to others.

 

You can download and unzip the file in order to access the clone state dictionaries. They can be loaded from disk using torch.load() (Paszke et al. 2019), and input into blase's SparseLinearEmulator (Gully-Santiago & Morley 2022) with its init_state_dict constructor argument.
DOI: 10.5281/zenodo.11246174
title: blase II: PHOENIX Subset Clone Archive

description: As part of our study, we cloned 1,314 individual PHOENIX spectra (Husser et al. 2013) with blase and optimized their line shapes with ML. These interpretable clones have been saved as state dictionaries in .pt files, which we upload here to be readily accessible to others.

 

You can download and unzip the file in order to access the clone state dictionaries. They can be loaded from disk using torch.load() (Paszke et al. 2019), and input into blase's SparseLinearEmulator (Gully-Santiago & Morley 2022) with its init_state_dict constructor argument.
DOI: 10.15468/dl.jt4aj6
title: Occurrence Download

description: A dataset containing 1842 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Lomatium linearifolium (S.Watson) J.F.Sm. & Mansfield, Lomatium lithosolamans J.F.Sm. & Feist, Lomatium lucidum (Nutt.) Jeps.)"
 ]
}

 The dataset includes 1842 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034233-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8npnkp
title: Occurrence Download

description: A dataset containing 38373 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Catharus frantzii Cabanis, 1861"
 ]
}

 The dataset includes 38373 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034234-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fdrgwf
title: Occurrence Download

description: A dataset containing 566 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nala lividipes (Dufour, 1820))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 566 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034235-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.quk2w9
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Lophopogon kingii Hook.f., Lophopogon prasannae K.Prasad, Nagaraju, A.Naray., A.M.Reddy, Sankara Rao & B.R.P, Lophopogon tridentatus (Roxb.) Hack.)"
 ]
}

 The dataset includes 54 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034237-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yt5nd6
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Luehea hoenhei Burret, Luehea ×marnierorum Demoly, Luehea microcarpa R.E.Fr.)"
 ]
}

 The dataset includes 90 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034238-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4zxuzd
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Megachile pluto Smith, 1861"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034239-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngjuzd
title: Occurrence Download

description: A dataset containing 6304 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Labidura riparia (Pallas, 1773))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6304 records from 207 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034240-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7c2jr
title: Occurrence Download

description: A dataset containing 5901 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Luzula abyssinica Parl., Luzula acuminata Raf., Luzula acutifolia Nordensk.)"
 ]
}

 The dataset includes 5901 records from 187 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034241-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqws8r
title: Occurrence Download

description: A dataset containing 18683705 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Observation",
 "OccurrenceStatus is Present",
 "Year 1970-2024"
 ]
}

 The dataset includes 18683705 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034212-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11209303
title: The evolution of antimicrobial peptide resistance in Pseudomonas aeruginosa is severely constrained by random peptide mixtures

description: The prevalence of antibiotic-resistant pathogens has become a major threat to public health, requiring swift initiatives for discovering new strategies to control bacterial infections. Hence, antibiotic stewardship and rapid diagnostics, but also the development, and prudent use, of novel effective antimicrobial agents are paramount. Ideally, these agents should be less likely to select for resistance in pathogens than currently available conventional antimicrobials. The usage of antimicrobial Peptides (AMPs), key components of the innate immune response, and combination therapies, have been proposed as strategies to diminish the emergence of resistance.

Herein, we investigated whether newly developed random antimicrobial peptide mixtures (RPMs) can significantly reduce the risk of resistance evolution in vitro to that of single sequence AMPs, using the ESKAPE pathogen Pseudomonas aeruginosa (P. aeruginosa) as a model Gram-negative bacterium. Infections of this pathogen are difficult to treat due the inherent resistance to many drug classes, enhanced by the capacity to form biofilms. P. aeruginosa was experimentally evolved in the presence of AMPs or RPMs, subsequentially assessing the extent of resistance evolution and cross-resistance/collateral sensitivity between treatments. Furthermore, the fitness costs of resistance on bacterial growth were studied, and whole-genome sequencing used to investigate which mutations could be candidates for causing resistant phenotypes. Lastly, changes in the pharmacodynamics of the evolved bacterial strains were examined.

Our findings suggest that using RPMs bears a much lower risk of resistance evolution compared to AMPs and mostly prevents cross-resistance development to other treatments, while maintaining (or even improving) drug sensitivity. This strengthens the case for using random cocktails of AMPs in favour of single AMPs, against which resistance evolved in vitro, providing an alternative to classic antibiotics worth pursuing.
DOI: 10.5281/zenodo.11209304
title: The evolution of antimicrobial peptide resistance in Pseudomonas aeruginosa is severely constrained by random peptide mixtures

description: The prevalence of antibiotic-resistant pathogens has become a major threat to public health, requiring swift initiatives for discovering new strategies to control bacterial infections. Hence, antibiotic stewardship and rapid diagnostics, but also the development, and prudent use, of novel effective antimicrobial agents are paramount. Ideally, these agents should be less likely to select for resistance in pathogens than currently available conventional antimicrobials. The usage of antimicrobial Peptides (AMPs), key components of the innate immune response, and combination therapies, have been proposed as strategies to diminish the emergence of resistance.

Herein, we investigated whether newly developed random antimicrobial peptide mixtures (RPMs) can significantly reduce the risk of resistance evolution in vitro to that of single sequence AMPs, using the ESKAPE pathogen Pseudomonas aeruginosa (P. aeruginosa) as a model Gram-negative bacterium. Infections of this pathogen are difficult to treat due the inherent resistance to many drug classes, enhanced by the capacity to form biofilms. P. aeruginosa was experimentally evolved in the presence of AMPs or RPMs, subsequentially assessing the extent of resistance evolution and cross-resistance/collateral sensitivity between treatments. Furthermore, the fitness costs of resistance on bacterial growth were studied, and whole-genome sequencing used to investigate which mutations could be candidates for causing resistant phenotypes. Lastly, changes in the pharmacodynamics of the evolved bacterial strains were examined.

Our findings suggest that using RPMs bears a much lower risk of resistance evolution compared to AMPs and mostly prevents cross-resistance development to other treatments, while maintaining (or even improving) drug sensitivity. This strengthens the case for using random cocktails of AMPs in favour of single AMPs, against which resistance evolved in vitro, providing an alternative to classic antibiotics worth pursuing.
DOI: 10.15468/dl.bemwq2
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Merothrips morgani Hood, 1912)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034243-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2s7kvx
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Lyonia macrocalyx (J.Anthony) Airy Shaw, Lyonia macrophylla (Britton) Ekman & Urb., Lyonia maestrensis Acuña & Roig)"
 ]
}

 The dataset includes 193 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034245-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.