DOI: 10.5281/zenodo.4775125
title: Detection-and-Tracking of Dolphins of Aerial Videos and Images

description: This Project consists of two datasets, both of aerial images and videos of dolphins, being taken by drones. The data was captured from few places (Italy and Israel coast lines). The aim of the project is to examine automated dolphins detection and tracking from aerial surveys. The project description, details and results are presented in the paper (link to the paper). Each dataset was organized and set for a different phase of the project. Each dataset is located in a different zip file: 1. Detection - Detection.zip 2. Tracking - Tracking.zip Further information about the datasets' content and annotation format is below. * In aim to watch each file content, use the preview option, in addition a description appears later on this section. <strong>Detection Dataset</strong> This dataset contains 1125 aerial images, while an image can contain several dolphins. The detection phase of the project is done using RetinaNet, supervised deep learning based algorithm, with the implementation of Keras RetinaNet. Therefore, the data was divided into three parts - Train, Validation and Test. The relations is 70%, 15%, 15% respectively. The annotation format follows the requested format of that implementation (Keras RetinaNet). Each object, which is a dolphin, is annotated as a bounding box coordinates and a class. For this project, the dolphins were not distinguished into species, therefore, a dolphin object is annotated as a bounding box, and classified as a 'Dolphin'. Detection zip file includes: A folder for each - Train, Validation and Test subsets, which includes the images An annotations CSV file for each subset A class mapping csv file (one for all the subsets). *The annotation format is detailed in <strong>Annotation </strong>section. Detection zip file content: <pre><code>Detection |——————train_set (images) |——————train_set.csv |——————validation_set (images) |——————train_set.csv |——————test_set (images) |——————train_set.csv └——————class_mapping.csv</code></pre> <strong>Tracking</strong> This dataset contains 5 short videos (10-30 seconds), which were trimmed from a longer aerial videos, captured from a drone. The tracking phase of the project is done using two metrics: VIAME application, using the tracking feature Re3: Real-Time Recurrent Regression Networks for Visual Tracking of Generic Objects, by Daniel Gordon. For this project, the author's Tensorflow implementation is being used Both metrics demand the videos' frames sequence as an input. Therefore, the videos' frames were extracted. The first frame was annotated manually for initialization, and the algorithms track accordingly. Same as the Detection dataset, each frame can includes several objects (dolphins). For annotation consistency, the videos' frames sequences were annotated similar to the Detection Dataset above, (details can be found in <strong>Annotation </strong>section). Each video's frames annotations separately. Therefore, Tracking zip file contains a folder for each video (5 folders in total), named after the video's file name. Each video folder contains: Frames sequence directory, which includes the extracted frames of the video An annotations CSV file A class mapping CSV file The original video in MP4 format The examined videos description and details are displayed in 'Videos Description.xlsx' file. Use the preview option for displaying its content. Tracking zip file content: <pre><code>Tracking |——————DJI_0195_trim_0015_0045 | └——————frames (images) | └——————annotations_DJI_0195_trim_0015_0045.csv | └——————class_mapping_DJI_0195_trim_0015_0045.csv | └——————DJI_0195_trim_0015_0045.MP4 |——————DJI_0395_trim_0010_0025 | └——————frames (images) | └——————annotations_DJI_0395_trim_0010_0025.csv | └——————class_mapping_DJI_0395_trim_0010_0025.csv | └——————DJI_0195_trim_0015_0045.MP4 |——————DJI_0395_trim_00140_00150 | └——————frames (images) | └——————annotations_DJI_0395_trim_00140_00150.csv | └——————class_mapping_DJI_0395_trim_00140_00150.csv | └——————DJI_0395_trim_00140_00150.MP4 |——————DJI_0395_trim_0055_0085 | └——————frames (images) | └——————annotations_DJI_0395_trim_0055_0085.csv | └——————class_mapping_DJI_0395_trim_0055_0085.csv | └——————DJI_0395_trim_0055_0085.MP4 └——————HighToLow_trim_0045_0070 └—————frames (images) └—————annotations_HighToLow_trim_0045_0070.csv └—————class_mapping_HighToLow_trim_0045_0070.csv └—————HighToLow_trim_0045_0070.MP4</code></pre> <strong>Annotations format</strong> Both datasets have similar annotation format which is described below. The data annotation format, of both datasets, follows the requested format of Keras RetinaNet Implementation, which was used for training in the Dolphins Detection phase of the project. Each object (dolphin) is annotated by a bounding box left-top and right-bottom coordinates and a class. Each image or frame can includes several objects. All data was annotated using Labelbox application. For each subset (Train, Validation and Test of Detection dataset, and each video of Tracking Dataset) there are two corresponded CSV files: Annotations CSV file Class mapping CSV file Each line in the <strong>Annotations CSV</strong> file contains an annotation (bounding box) in an image or frame.<br> The format of each line of the CSV annotation is: <em>path/to/image.jpg -</em> a path to the image/frame <em>x1, y1 - </em>image coordinates of the left upper corner of the bounding box <em>x2, y2 - </em>image coordinates of the right bottom corner of the bounding box <em>class_name</em> - class name of the annotated object <pre><code>path/to/image.jpg,x1,y1,x2,y2,class_name</code></pre> An example from <em>`train_set.csv`</em>: <pre><code>.\train_set\1146_20170730101_ce1_sc_GOPR3047 103.jpg,506,644,599,681,Dolphin .\train_set\1146_20170730101_ce1_sc_GOPR3047 103.jpg,394,754,466,826,Dolphin .\train_set\1147_20170730101_ce1_sc_GOPR3047 104.jpg,613,699,682,781,Dolphin .\train_set\1147_20170730101_ce1_sc_GOPR3047 104.jpg,528,354,586,443,Dolphin .\train_set\1147_20170730101_ce1_sc_GOPR3047 104.jpg,633,250,723,307,Dolphin</code></pre> This defines a dataset with 2 images: <em>`1146_20170730101_ce1_sc_GOPR3047 103.jpg`</em> which contains 2 objects classified as 'Dolphin' <em>`1146_20170730101_ce1_sc_GOPR3047 104.jpg`</em> which contains 3 objects classified as 'Dolphin' Each line in the <strong>Class Mapping CSV</strong> file contains a mapping: <pre><code>class_name,id</code></pre> An example: <pre><code>Dolphin,0</code></pre>