cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7778254
title: Nutrition, gUT Microbiota, and BRain AgINg: the NutBrain Study (NutBrain)

description: The NutBrain Study is a multidisciplinary research project that incorporates modern and advanced technologies (i.e microbiome and neuroimaging) into traditional epidemiologic design study aimed to address key questions about the role of modifiable risk factors on cognitive impairment, with a particular focus on dietary habits and their association with gut microbiota and markers of brain-ageing process. NutBrain is a cross-sectional study of community–dwelling adults aged 65 years or more living in the Lombardy Region (Italy). The study was started on October 1, 2018, and ended on January 31, 2023, and was divided into two phases: 1) participants’ screening and data collection and 2) clinical evaluation. At the presentation point, people were screened for global cognitive function and specific domains (standard neuropsychological tests). Socio-demographic characteristics (sex, age, education, living conditions, job positions) along with lifestyles (physical activity, smoking, leisure activities) and dietary habits (collected through a food frequency questionnaire), medical history (diseases), use of drugs, functional status (ADL, IADL, walking disability, weakness), and anthropometric measurements (weight, height, body composition) were also recorded. Individuals suspected to have mild cognitive impairment (MCI) at the screening phase, underwent a clinical evaluation including a neurological examination and Magnetic Resonance Imaging (MRI) scanning (total volume, white matter, grey ventricular cerebrospinal fluid, and hippocampal volumes). In this phase, faecal samples were also collected for the analysis of the gut microbiota (16S rRNA analysis) and blood samples for the determination of the APOE genotype (presence of the ε4 allele) and biological markers of interest including inflammatory markers (CRP, IL6, TNF-α) and low molecular weight metabolites (metabolomic analysis). For each subject with a confirmed diagnosis of MCI, one/two cognitively intact controls of the same sex and age were visited and underwent the same protocol.
description: Funding: Ricerca Finalizzata GR-2016-02361730, Ministry of Health, Italy
DOI: 10.4121/21118990
title: Data supporting the paper: Stability of a two-dimensional biomorphoelastic model for post-burn contraction

description: This online resource shows Matlab figures, videos, and simulation data files corresponding to the paper <em>Stability of a two-dimensional biomorphoelastic model for post-burn contraction. </em>We analyze the stability in the corresponding paper, and numerically validate these stability constraints. The videos show an example of an unstable simulation. The figures are Matlab figures that were shown in the paper. The collection of videos correspond to Figure 4 and Figure 6 in the paper. There is a README.pdf. The simulation data is created with the Matlab codes.
DOI: 10.4121/21118990.v1
title: Data supporting the paper: Stability of a two-dimensional biomorphoelastic model for post-burn contraction

description: This online resource shows Matlab figures, videos, and simulation data files corresponding to the paper <em>Stability of a two-dimensional biomorphoelastic model for post-burn contraction. </em>We analyze the stability in the corresponding paper, and numerically validate these stability constraints. The videos show an example of an unstable simulation. The figures are Matlab figures that were shown in the paper. The collection of videos correspond to Figure 4 and Figure 6 in the paper. There is a README.pdf. The simulation data is created with the Matlab codes.
DOI: 10.5519/qd.ax3osbh2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.22360330
title: Data from Remodelling and dysfunction of the sinus node in pulmonary arterial hypertension

description: Data
DOI: 10.6084/m9.figshare.22360330.v1
title: Data from Remodelling and dysfunction of the sinus node in pulmonary arterial hypertension

description: Data
DOI: 10.6084/m9.figshare.22347727
title: Ståhl et al. The Role of Human and Pet Personalities and Pet Unwanted Behaviour in Attachment to Dogs and Cats: a SEM approach

description: Personality and unwanted behavior questionnaire data of 2545 finnish pet dogs and 788 finnish pet cats and personality, mental well-being, and pet attachment questionnaire data of their 2724 owners.
DOI: 10.6084/m9.figshare.22347727.v2
title: Ståhl et al. The Role of Human and Pet Personalities and Pet Unwanted Behaviour in Attachment to Dogs and Cats: a SEM approach

description: Personality and unwanted behavior questionnaire data of 2545 finnish pet dogs and 788 finnish pet cats and personality, mental well-being, and pet attachment questionnaire data of their 2724 owners.
DOI: 10.6084/m9.figshare.22347727.v1
title: Ståhl et al. The Role of Human and Pet Personalities and Pet Unwanted Behaviour in Attachment to Dogs and Cats: a SEM approach

description: Personality and unwanted behavior questionnaire data of 2545 finnish pet dogs and 788 finnish pet cats and personality, mental well-being, and pet attachment questionnaire data of their 2724 owners.
DOI: 10.6084/m9.figshare.22360267
title: Imano et al. AJPHCP figure data

description: These data were used to make figures in the munuscript published in AJPHCP.
DOI: 10.6084/m9.figshare.22360267.v1
title: Imano et al. AJPHCP figure data

description: These data were used to make figures in the munuscript published in AJPHCP.
DOI: 10.25919/6av7-rc72
title: Parkes observations for project PX500 semester 2022OCTS_28

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries. As the observing time has been purchased this proposal (and the related PX501) does not require TAC grading. The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first, relating to this proposal, will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period. The second type of time will be scheduled in shorter blocks and the data archived with a 10 year embargo.
DOI: 10.25919/e4c0-gb62
title: Parkes observations for project PX500 semester 2022OCTS_27

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries. As the observing time has been purchased this proposal (and the related PX501) does not require TAC grading. The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first, relating to this proposal, will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period. The second type of time will be scheduled in shorter blocks and the data archived with a 10 year embargo.
DOI: 10.17909/khyq-ed06
title: RN FUV HD 175362
DOI: 10.34808/xak8-rr65
title: Inserts amplification for knockout cassette construction

description: The goal of the study was to obtain optimal conditions for amplification of upstream and downstream genes fragments and introduce a cleavage site for restriction enzymes into them thanks to which it will be possible to clone fragments into a plasmid containing elements of the knockout cassette. The constructed cassettes will enable the removal of the tested genes from the C. albicans SC5314 genome using the SAT1-flipper method.
The deletion of tested genes encoding enzymes O-acetylhomoserine sulfhydrylases Met15p, homoserine O-acetyltransferases Met2p and cystathionine-γ-synthases Str2p enable the assessment of the impact of those enzymes on the phenotype of cells, on the virulence of the strain, and allows to recognize the in vivo function of the tested proteins in L-methionine biosynthesis.
The studies were financially supported from the project OPUS 20 financed by the National Science Centre (No. UMO-2020/39/B/NZ7/01519).
DOI: 10.5281/zenodo.6091360
title: COVID Image segmentation datasets and trained model

description: COVID CT scan datasets for segmentation and trained model for prediction created by training uNet. The referred paper is: https://www.sciencedirect.com/science/article/pii/S2666990021000069 Origin of datasets: https://medicalsegmentation.com/covid19/
DOI: 10.17037/data.00003316
title: Data for: Antenatal versus general population HIV prevalence in Siaya, Western Kenya

description: A tabular dataset that brings together HIV status information from two data sources: [1] a population-based HIV prevalence survey among Siaya HDSS residents performed in 2018, and [2] a surveillance of 13 public antenatal clinics (ANC) located in the HDSS area that was performance between February and November 2018. A subset of ANC records (1,122 out of 1,724 women) were individually linked to the HDSS database. The dataset was analysed in the PLOS ONE paper “Comparison of programmatic data from antenatal clinics with population-based HIV prevalence estimates in the era of universal test and treat in western Kenya”. The study is a collaboration between the Kenya Medical Research Institute (KEMRI) and the London School of Hygiene and Tropical Medicine (ALPHA Network & MESH Network). KEMRI is the custodian of the HDSS and ANC data used in the study.
DOI: 10.5445/ir/1000157325
title: Research data "Impact of Saharan dust outbreaks on short-range weather forecast errors in Europe"
DOI: 10.6084/m9.figshare.21087065
title: Evaluating reporting of patient-reported outcomes in peptic ulcer disease: a meta-epidemiological study of randomized controlled trials

description: Peptic ulcer disease (PUD) can significantly affect quality of life (QoL). These QoL outcomes are often patient-reported, and their inclusion in clinical trials supplements efficacy outcomes to provide the patients’ perspective. This assese existing literature for completeness of PRO reporting across randomized controlled trials (RCTs) evaluating PUD. This meta-epidemiological, cross-sectional study that assessed completeness of reporting among RCTs addressing management of PUD. We conducted a comprehensive literature search] to identify RCTs with a PRO as a primary or secondary outcome. These RCTs were assessed for completion of reporting according to the PRO adaptation of CONSORT checklist. RCTs were also assessed for Risk of Bias (RoB) using the Cochrane RoB 2.0 tool. Masked, duplicate screening of 829 results = yielded a final sample of 35 RCTs. The average completeness of reporting was 32.9% according to the CONSORT-PRO adaptation. Twenty-one (of 35; 60%) of the RCTs were assessed as having ‘high’ risk of bias and nine (of 35; 25.71%) were assessed as having ‘some concerns’ for risk of bias. Bivariate regression found completeness of reporting to be positively associated with increased PRO follow-up duration, sample size, and studies with conflicts of interest. RCTs examining the treatment and prevention of PUD with PROs as an outcome measure have deficient reporting and ‘high’ risk of bias according to the CONSORT-PRO and Cochrane RoB guidelines.
DOI: 10.6084/m9.figshare.21087065.v1
title: Evaluating reporting of patient-reported outcomes in peptic ulcer disease: a meta-epidemiological study of randomized controlled trials

description: Peptic ulcer disease (PUD) can significantly affect quality of life (QoL). These QoL outcomes are often patient-reported, and their inclusion in clinical trials supplements efficacy outcomes to provide the patients’ perspective. This assese existing literature for completeness of PRO reporting across randomized controlled trials (RCTs) evaluating PUD. This meta-epidemiological, cross-sectional study that assessed completeness of reporting among RCTs addressing management of PUD. We conducted a comprehensive literature search] to identify RCTs with a PRO as a primary or secondary outcome. These RCTs were assessed for completion of reporting according to the PRO adaptation of CONSORT checklist. RCTs were also assessed for Risk of Bias (RoB) using the Cochrane RoB 2.0 tool. Masked, duplicate screening of 829 results = yielded a final sample of 35 RCTs. The average completeness of reporting was 32.9% according to the CONSORT-PRO adaptation. Twenty-one (of 35; 60%) of the RCTs were assessed as having ‘high’ risk of bias and nine (of 35; 25.71%) were assessed as having ‘some concerns’ for risk of bias. Bivariate regression found completeness of reporting to be positively associated with increased PRO follow-up duration, sample size, and studies with conflicts of interest. RCTs examining the treatment and prevention of PUD with PROs as an outcome measure have deficient reporting and ‘high’ risk of bias according to the CONSORT-PRO and Cochrane RoB guidelines.
DOI: 10.6084/m9.figshare.21173928
title: The impact of fibrodysplasia ossificans progressiva (FOP) on patients and their family members: results from an international burden of illness survey

description: Fibrodysplasia ossificans progressiva (FOP) is an ultra-rare, genetic disorder of heterotopic ossification within soft, connective tissues resulting in limited joint function and severe disability. We present results from an international burden of illness survey (NCT04665323) assessing physical, quality of life (QoL), and economic impacts of FOP on patients and family members. Patient associations in 15 countries invited their members to participate; individuals with FOP and their family members were eligible. The survey was available online, in 11 languages, from 18 January–30 April 2021. Participants responded to assessments measuring joint function, QoL, healthcare service and living adaptation utilization, out-of-pocket costs, employment, and travel. The survey received 463 responses (patients, n = 219; family members, n = 244). For patients, decreased joint function was associated with reduced QoL and greater reliance on living adaptations. Nearly half of primary caregivers experienced a mild to moderate impact on their health/psychological wellbeing. Most primary caregivers and patients (≥18 years) reported that FOP impacted their career decisions. Data from this survey will improve understanding of the impact of FOP on patients and family members, which is important for identifying unmet needs, optimizing care, and improving support for the FOP community.
DOI: 10.6084/m9.figshare.21173928.v1
title: The impact of fibrodysplasia ossificans progressiva (FOP) on patients and their family members: results from an international burden of illness survey

description: Fibrodysplasia ossificans progressiva (FOP) is an ultra-rare, genetic disorder of heterotopic ossification within soft, connective tissues resulting in limited joint function and severe disability. We present results from an international burden of illness survey (NCT04665323) assessing physical, quality of life (QoL), and economic impacts of FOP on patients and family members. Patient associations in 15 countries invited their members to participate; individuals with FOP and their family members were eligible. The survey was available online, in 11 languages, from 18 January–30 April 2021. Participants responded to assessments measuring joint function, QoL, healthcare service and living adaptation utilization, out-of-pocket costs, employment, and travel. The survey received 463 responses (patients, n = 219; family members, n = 244). For patients, decreased joint function was associated with reduced QoL and greater reliance on living adaptations. Nearly half of primary caregivers experienced a mild to moderate impact on their health/psychological wellbeing. Most primary caregivers and patients (≥18 years) reported that FOP impacted their career decisions. Data from this survey will improve understanding of the impact of FOP on patients and family members, which is important for identifying unmet needs, optimizing care, and improving support for the FOP community.
DOI: 10.6084/m9.figshare.21494499
title: Cost-effectiveness of using a 20-valent pneumococcal conjugate vaccine to directly protect adults in England at elevated risk of pneumococcal disease

description: Despite the current pneumococcal vaccination program in England for older adults and adults with underlying conditions, disease burden remains high. We evaluated cost-effectiveness of 20-valent pneumococcal conjugate vaccine (PCV20) compared to current pneumococcal recommendations for adults in England. Lifetime outcomes/costs of invasive pneumococcal disease (IPD) and community-acquired pneumonia (CAP) among adults aged 65–99 years and adults aged 18–64 years with underlying conditions in England were projected using a deterministic cohort model. Vaccination with PCV20 was compared with 23-valent pneumococcal polysaccharide vaccine (PPV23) from the National Health Service perspective. PCV20 was cost saving compared with PPV23 in base case and most sensitivity analyses. In the base case, replacing PPV23 with PCV20 prevented 7,789 and 140,046 cases of IPD and hospitalized CAP, respectively, and 22,199 associated deaths, resulting in incremental gain of 91,375 quality-adjusted life-years (QALYs) and incremental savings of £160M. In probabilistic sensitivity analyses, PCV20 (vs. PPV23) was cost saving in 85% of simulations; incremental cost per QALY was below £30,000 in 99% of simulations. PCV20 vaccination in adults aged 65–99 years and those aged 18–64 years with underlying comorbidities in England is expected to prevent more hospitalizations, save more lives, and yield lower overall costs than current recommendations for PPV23.
DOI: 10.6084/m9.figshare.21494499.v1
title: Cost-effectiveness of using a 20-valent pneumococcal conjugate vaccine to directly protect adults in England at elevated risk of pneumococcal disease

description: Despite the current pneumococcal vaccination program in England for older adults and adults with underlying conditions, disease burden remains high. We evaluated cost-effectiveness of 20-valent pneumococcal conjugate vaccine (PCV20) compared to current pneumococcal recommendations for adults in England. Lifetime outcomes/costs of invasive pneumococcal disease (IPD) and community-acquired pneumonia (CAP) among adults aged 65–99 years and adults aged 18–64 years with underlying conditions in England were projected using a deterministic cohort model. Vaccination with PCV20 was compared with 23-valent pneumococcal polysaccharide vaccine (PPV23) from the National Health Service perspective. PCV20 was cost saving compared with PPV23 in base case and most sensitivity analyses. In the base case, replacing PPV23 with PCV20 prevented 7,789 and 140,046 cases of IPD and hospitalized CAP, respectively, and 22,199 associated deaths, resulting in incremental gain of 91,375 quality-adjusted life-years (QALYs) and incremental savings of £160M. In probabilistic sensitivity analyses, PCV20 (vs. PPV23) was cost saving in 85% of simulations; incremental cost per QALY was below £30,000 in 99% of simulations. PCV20 vaccination in adults aged 65–99 years and those aged 18–64 years with underlying comorbidities in England is expected to prevent more hospitalizations, save more lives, and yield lower overall costs than current recommendations for PPV23.
DOI: 10.17632/mxz55n7xft.1
title: MRONJ incidence after tooth extractions Appendix

description: Data used in a systematic review "Incidence and risk factors for medication-related osteonecrosis after tooth extraction in cancer patients – A systematic review". The systematic review aims at investigating the incidence of and risk factors for MRONJ after tooth extractions in cancer patients treated with high-dose intravenous bisphosphonate and denosumab. The protocol followed the PRISMA statement list and was registered in PROSPERO. Searches were performed for literature published up to April 2021 in the electronic databases PubMed, Embase, Web of Science and CINAHL, and then supplemented by manual research resulting in 771 identified articles, of which seven studies fitted the population, intervention, comparison, and outcome (PICO) framework. In this appendix the articles deselected in the last stage of the process are shown.
DOI: 10.21334/npolar.2020.eed6abd6
title: Coastal map series for Svalbard in scale 1:250,000

description: Composing the Coastal map series for Svalbard, except Nordaustlandet and Kvitøya. Eight map sheets in scale 1:250,000. Contains information about the morphology (classification in four or five variations) and loose masses, as well as biological information. The field work was done by Professor Johan Ludvig Solli, Blindern and Rune Ødegård, also from UiO.Aerial photography, film recording from helicopter and field work.
DOI: 10.6084/m9.figshare.22227181
title: Supplementary Materials from Comment on "Ultrastructure reveals ancestral vertebrate pharyngeal skeleton in yunnanozoans"

description: The PDF file includes: Figs. S1 and S2 Tables S1 and S2 References
DOI: 10.6084/m9.figshare.21249087
title: Dataset for phylogenetic analyses with MrBayes commands from Comment on "Ultrastructure reveals ancestral vertebrate pharyngeal skeleton in yunnanozoans"

description: We re-checked and amended the matrix of Tian <em>et al</em>. in the light of the published literature. We revised 69 characters used by Tian et al. and conducted the phylogenetic analysis using both the methods described in the paper and additional model-based approaches. NEXUS file formatted for MrBayes with commands necessary to execute the analyses.
DOI: 10.6084/m9.figshare.13607444
title: Finding the Exact Value of the Maximum Allowable Upper Bound of the Delay Parameters in the Multiple-Delays LTI Systems

description: These files are related to the following paper: -R. Abolpour, M. Dehghani, "Finding the Exact Value of the Maximum Allowable Upper Bound of the Delay Parameters in the Multiple-Delays LTI Systems," Journal of Vibration and Control, 2023 The dataset contains details of 10 systems in Example 2 and the results of the proposed method compared to other two previous methods in the literature. The dataset is a mat file which can be opened by Matlab and gives the details of ten systems and the upper bound of delay. t0 gives the details of our proposed method. t1 shows the result of the following paper: Lee, W.I., Lee, S.Y. and Park, P., 2018. Affine Bessel–Legendre inequality: application to stability analysis for systems with time-varying delays. <em>Automatica</em>, <em>93</em>, pp.535-539.<br> t2 presents the result of the following paper: Zeng, H.B., He, Y., Wu, M. and She, J., 2015. Free-matrix-based integral inequality for stability analysis of systems with time-varying delay. <em>IEEE Transactions on Automatic Control</em>, <em>60</em>(10), pp.2768-2772.<br>
DOI: 10.5281/zenodo.7784749
title: Copy number aberrations segmentfile

description: Copy number aberrations. Segmentfile.
DOI: 10.5281/zenodo.7784748
title: Copy number aberrations segmentfile

description: Copy number aberrations. Segmentfile.
DOI: 10.5281/zenodo.7783409
title: ERGA Post Assembly training dataset

description: This Zenodo repository includes the required datasets for following the ERGA post-assembly quality control training. Fastq files of chondrosia reniformis, part of erythrolamprus reginae and eschrichtius robustus
DOI: 10.5281/zenodo.7783408
title: ERGA Post Assembly training dataset

description: This Zenodo repository includes the required datasets for following the ERGA post-assembly quality control training. Fastq files of chondrosia reniformis, part of erythrolamprus reginae and eschrichtius robustus