cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.763906
title: Seawater carbonate chemistry in tide pools near Aber, Crozon penisula (France), 2009

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
DOI: 10.1594/pangaea.848775
title: The effects of water acidification, temperature and salinity on the regenerative capacity of the polychaete Diopatra neapolitana

description: Changes in seawater pH, temperature and salinity are expected to occur in the near future, which can be a threat to aquatic systems, mainly for marine coastal areas, and their inhabiting species. Hence, the present study proposes to evaluate the effects of temperature shifts, pH decrease and salinity changes in the tissue's regenerative capacity of the polychaete Diopatra neapolitana. This study evidenced that D. neapolitana individuals exposed to lower pH exhibited a significantly lower capacity to regenerate their body, while with the increase of temperature individuals showed a higher capacity to regenerate their tissues. Furthermore, the present work demonstrated that individuals exposed to salinities 28 and 35 did not present significant differences between them, while salinities 21 and 42 negatively influenced the regenerative capacity of D. neapolitana. At the end of regeneration, comparing all conditions, high salinity (42) seemed to have a greater impact on the regenerative capacity of individuals than the other factors, since under this condition individuals took longer to completely regenerate. Overall, this study demonstrated that variations in abiotic factors can strongly affect D. neapolitana's performance.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2015-08-17.
description: Supplement to: Pires, Adília; Figueira, Etelvina; Moreira, Anthony; Soares, Amadeu M V M; Freitas, Rosa (2015): The effects of water acidification, temperature and salinity on the regenerative capacity of the polychaete Diopatra neapolitana. Marine Environmental Research, 106, 30-41
DOI: 10.1594/pangaea.956107
title: Seawater carbonate chemistry and disease susceptibility in the eastern oyster Crassostrea virginica

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-02-28.
DOI: 10.1594/pangaea.967053
title: Seawater carbonate chemistry and cellular and alterations in gene expression in Mercenaria mercenaria

description: Northern quahog (Mercenaria mercenaria) were fertilized under normal pCO2 and reared under acidified (pH ~ 7.5, pCO2 ~ 1200 ppm) or control (pH ~ 7.9, pCO2 ~ 600 ppm) conditions before sampled at 2 days (larvae), 32 days (postsets), 5 and 10 months (juveniles) and submitted to RNA and DNA sequencing to evaluate alterations in gene expression and genetic variations.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-04-23.
DOI: 10.1594/pangaea.956080
title: Seawater carbonate chemistry and the growth rate of marine diatom Skeletonema marinoi

description: Because of their large population sizes and rapid cell division rates, marine microbes have, or can generate, ample variation to fuel evolution over a few weeks or months, and subsequently have the potential to evolve in response to global change. Here we measure evolution in the marine diatom Skeletonema marinoi evolved in a natural plankton community in CO2-enriched mesocosms deployed in situ. Mesocosm enclosures are typically used to study how the species composition and biogeochemistry of marine communities respond to environmental shifts, but have not been used for experimental evolution to date. Using this approach, we detect a large evolutionary response to CO2 enrichment in a focal marine diatom, where population growth rate increased by 1.3-fold in high CO2-evolved lineages. This study opens an exciting new possibility of carrying out in situ evolution experiments to understand how marine microbial communities evolve in response to environmental change.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-02-28.
DOI: 10.1594/pangaea.956081
title: Seawater carbonate chemistry and growth and carbon metabolism of the seaweed Fucus vesiculosus in the western Baltic Sea

description: Warming and acidification of the oceans as a consequence of increasing CO2-concentrations occur at large scales. Numerous studies have shown the impact of single stressors on individual species. However, studies on the combined effect of multiple stressors on a multi-species assemblage, which is ecologically much more realistic and relevant, are still scarce. Therefore, we orthogonally crossed the two factors warming and acidification in mesocosm experiments and studied their single and combined impact on the brown alga Fucus vesiculosus associated with its natural community (epiphytes and mesograzers) in the Baltic Sea in all seasons (from April 2013 to April 2014). We superimposed our treatment factors onto the natural fluctuations of all environmental variables present in the Benthocosms in so-called delta-treatments. Thereby we compared the physiological responses of F. vesiculosus (growth and metabolites) to the single and combined effects of natural Kiel Fjord temperatures and pCO2 conditions with a 5 °C temperature increase and/or pCO2 increase treatment (1100 ppm in the headspace above the mesocosms). Responses were also related to the factor photoperiod which changes over the course of the year. Our results demonstrate complex seasonal pattern. Elevated pCO2 positively affected growth of F. vesiculosus alone and/or interactively with warming. The response direction (additive, synergistic or antagonistic), however, depended on season and daylength. The effects were most obvious when plants were actively growing during spring and early summer. Our study revealed for the first time that it is crucial to always consider the impact of variable environmental conditions throughout all seasons. In summary, our study indicates that in future F. vesiculosus will be more affected by detrimental summer heat-waves than by ocean acidification although the latter consequently enhances growth throughout the year. The mainly negative influence of rising temperatures on the physiology of this keystone macroalga may alter and/or hamper its ecological functions in the shallow coastal ecosystem of the Baltic Sea.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-02-28.
DOI: 10.1594/pangaea.967082
title: Seawater carbonate chemistry and the immune performance of Mercenaria mercenaria to infection by Vibrio species

description: This study was designed to assess the physiological cost of resilience to acidification in the hard clam (Mercenaria mercenaria, also known as northern quahog). We examined growth and susceptibility to bacterial infection of larval and juvenile clams reared in seawater with altered pCO2. We specifically focused on changes in immune performances, measured as alterations of resistance of larvae and juveniles towards opportunistic Vibrio spp., among clams exposed to acidified seawater. By examining different life history stages, we were able to document differences in exposure time to acidification as well as potential carry-over effects. To determine if increased susceptibility to infection was direct or indirect, we examined the response of the Vibrio species used in the bacterial challenge to different pH treatments and their native presence in the treatment tanks prior to bacterial challenges. Furthermore, we determined if reduced immune function induced by exposure to acidification was permanent or if clams can rebound and restore immunity after transfer to low pCO2/high pH conditions (indicating a plastic response and/or a selection event) and if early survival in OA conditions was related to success at later stages (through either acclimation or carry over effects).
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-03-28.
DOI: 10.1594/pangaea.967074
title: Seawater carbonate chemistry and coccolithophores and diatoms resilient to oceanalkalinity enhancement

description: Here, we investigatethe impacts of moderate (~700 μmol/kg) and high (~2700 μmol/kg) limestone-inspired alkalinity additionson two biogeochemically and ecologically important phytoplankton functional group representatives: Emilianiahuxleyi (calcium carbonate producer) and Chaetoceros sp. (silica producer). The growth rate and elemental ratiosof both taxa were estimated.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-03-28.
DOI: 10.1594/pangaea.967107
title: Seawater carbonate chemistry and Pseudo-nitzschia australis growth and toxicity

description: To gain a better understanding of what drives Pseudo-nitzschia australis growth and toxicity during upwelling and marine heatwave events, multiple-driver scenario or 'cluster' experiments were conducted using temperature, pCO2, and nutrient levels reflecting conditions during upwelling (13 ◦C, 900 ppm pCO2, replete nutrients) and two intensities of marine heatwaves (19 ◦C or 20.5 ◦C, 250 ppm pCO2, reduced macronutrients). We also conducted single-driver experiments to gain a mechanisticunderstanding of which drivers most impact P. australis growth and toxicity.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-04-03.
DOI: 10.1594/pangaea.733912
title: Seawater carbonate chemistry and biological processes during experiments with haploid and diploid life stages of Emiliania huxleyi, Calcidiscus leptoporus and Syracosphaera pulchra

description: The response of Emiliania huxleyi (Lohmann), Calcidiscus leptoporus (Murray and Blackman), and Syracosphaera pulchra (Lohmann) to elevated partial pressure of carbon dioxide (pCO2) was investigated in batch cultures. For the first time, we reported on the response of the non-calcifying (haploid) life stage of these three species. Growth rate, cell size, particulate inorganic (PIC) and particulate organic carbon (POC) of both life stages were measured at two different pCO2 (400 and 760 ppm) and their organic and inorganic carbon production calculated. The two life stages within the same species generally exhibited a similar response to elevated pCO2, the response of the haploid stage being often more pronounced than that of the diploid stage. The growth rate was consistently higher at elevated pCO2 but the response of other processes varied among species. Calcification rate of C. leptoporus and of S. pulchra did not change at elevated pCO2 while it increased in E. huxleyi. Particulate organic carbon production and cell size of both life stages of S. pulchra and of the haploid stage of E. huxleyi markedly decreased at elevated pCO2. It remained unaltered in the diploid stage of E. huxleyi and C. leptoporus and increased in the haploid stage of the latter. The PIC:POC ratio increased in E. huxleyi and was constant in C. leptoporus and S. pulchra. Elevated pCO2 has a significant effect on these three coccolithophores species, the haploid stage being more sensitive. This must be taken into account when predicting the fate of coccolithophores in the future ocean.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
description: Supplement to: Fiorini, Sarah; Gattuso, Jean-Pierre; van Rijiswijk, Pieter; Middelburg, Jack J (2010): Coccolithophores lipid and carbon isotope composition and their variability related to changes in seawater carbonate chemistry. Journal of Experimental Marine Biology and Ecology, 394(1-2), 74-85
DOI: 10.1594/pangaea.915978
title: Seawater carbonate chemistry and mussel respiration and calcification rates

description: Marine habitat‐forming species often play critical roles on rocky shores by ameliorating stressful conditions for associated organisms. Such ecosystem engineers provide structure and shelter, for example, by creating refuges from thermal and desiccation stresses at low tide. Less explored is the potential for habitat formers to alter interstitial seawater chemistry during their submergence. Here, we quantify the capacity for dense assemblages of the California mussel, Mytilus californianus, to change seawater chemistry (dissolved O2, pH, and total alkalinity) within the interiors of mussel beds at high tide via respiration and calcification. We established a living mussel bed within a laboratory flow tank and measured vertical pH and oxygen gradients within and above the mussel bed over a range of water velocities. We documented decreases of up to 0.1 pH and 25 μmol O2/kg internal to the bed, along with declines of 100 μmol/kg in alkalinity, when external flows were  95% of the time. Reductions in pH and O2 inside mussel beds may negatively impact resident organisms and exacerbate parallel human‐induced perturbations to ocean chemistry while potentially selecting for improved tolerance to altered chemistry conditions.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-05-6.
DOI: 10.1594/pangaea.956159
title: Seawater carbonate chemistry and the metabolic response of thecosome pteropods from the North Atlantic and North Pacific oceans

description: As anthropogenic activities directly and indirectly increase carbon dioxide (CO2) and decrease oxygen (O2) concentrations in the ocean system, it becomes important to understand how different populations of marine animals will respond. Water that is naturally low in pH, with a high concentration of carbon dioxide (hypercapnia) and a low concentration of oxygen, occurs at shallow depths (200–500 m) in the North Pacific Ocean, whereas similar conditions are absent throughout the upper water column in the North Atlantic. This contrasting hydrography provides a natural experiment to explore whether differences in environment cause populations of cosmopolitan pelagic calcifiers, specifically the aragonitic-shelled pteropods, to have a different physiological response when exposed to hypercapnia and low O2. Using closed-chamber end-point respiration experiments, eight species of pteropods from the two ocean basins were exposed to high CO2 (  800 µatm) while six species were also exposed to moderately low O2 (48 % saturated, or  130 µmol/kg) and a combined treatment of low O2/high CO2. None of the species tested showed a change in metabolic rate in response to high CO2 alone. Of those species tested for an effect of O2, only Limacina retroversa from the Atlantic showed a response to the combined treatment, resulting in a reduction in metabolic rate. Our results suggest that pteropods have mechanisms for coping with short-term CO2 exposure and that there can be interactive effects between stressors on the physiology of these open ocean organisms that correlate with natural exposure to low O2 and high CO2. These are considerations that should be taken into account in projections of organismal sensitivity to future ocean conditions.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-02-28.
DOI: 10.1594/pangaea.953111
title: Seawater carbonate chemistry for the transgenerational experiment on synergistic genomic mechanisms of adaptation to ocean warming and acidification in a marine copepod

description: Metazoan adaptation to global change relies on selection of standing genetic variation. Determining the extent to which this variation exists in natural populations, particularly for responses to simultaneous stressors, is essential to make accurate predictions for persistence in future conditions. Here, we identified the genetic variation enabling the copepod Acartia tonsa to adapt to experimental ocean warming, acidification, and combined ocean warming and acidification (OWA) over 25 generations of continual selection. Replicate populations showed a consistent polygenic response to each condition, targeting an array of adaptive mechanisms including cellular homeostasis, development, and stress response. We used a genome-wide covariance approach to partition the allelic changes into three categories: selection, drift and replicate-specific selection, and laboratory adaptation responses. The majority of allele frequency change in warming (57%) and OWA (63%) was driven by shared selection pressures across replicates, but this effect was weaker under acidification alone (20%). OWA and warming shared 37% of their response to selection but OWA and acidification shared just 1%, indicating that warming is the dominant driver of selection in OWA. Despite the dominance of warming, the interaction with acidification was still critical as the OWA selection response was highly synergistic with 47% of the allelic selection response unique from either individual treatment. These results disentangle how genomic targets of selection differ between single and multiple stressors and demonstrate the complexity that nonadditive multiple stressors will contribute to predictions of adaptation to complex environmental shifts caused by global change.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-12-23.
DOI: 10.1594/pangaea.807758
title: Hydrochemistry measured on water bottle samples during Hakurei-Maru cruise NH92-2
DOI: 10.1594/pangaea.956135
title: Seawater carbonate chemistry and fouling community structure and diversity

description: 1.Increasing levels of CO2 in the atmosphere are affecting ocean chemistry, leading to increased acidification (i.e., decreased pH) and reductions in calcium carbonate saturation state. 2.Many species are likely to respond to acidification, but the direction and magnitude of these responses will be based on interspecific and ontogenetic variation in physiology and the relative importance of calcification. Differential responses to ocean acidification among species will likely result in important changes in community structure and diversity. 3.To characterize potential impacts of ocean acidification on community composition and structure, we examined the response of a marine fouling community to experimental CO2 enrichment in field-deployed flow-through mesocosm systems. 4.Acidification significantly altered community structure by altering the relative abundances of species and reduced community variability, resulting in more homogenous biofouling communities from one experimental tile to the next both among and within the acidified mesocosms. Mussel (Mytilus trossulus) recruitment was reduced by over 30% in the elevated CO2 treatment compared to the ambient treatment by the end of the experiment. Strong differences in mussel cover (up to 40% lower in acidified conditions) developed over the second half of the 10-week experiment. Acidification did not appear to affect mussel growth, as average mussel sizes were similar between treatments at the end of the experiment. Hydroid (Obelia dichotoma) cover was significantly reduced in the elevated CO2 treatment after eight weeks. Conversely, the percent cover of bryozoan colonies (Mebranipora membranacea) was higher under acidified conditions with differences becoming apparent after six weeks. Neither recruitment nor final size of barnacles (Balanus crenatus) was affected by acidification. By the end of the experiment, diversity was 41% lower in the acidified treatment relative to ambient conditions. 5.Overall, our findings support the general expectation that OA will simplify marine communities by acting on important ecological processes that ultimately determine community structure and diversity.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-02-28.