cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1674664.08fu
title: SH1674664.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh311297.07fu
title: SH311297.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh311298.07fu
title: SH311298.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh311299.07fu
title: SH311299.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25625/wte3oi/mzd1pp
title: Fig3 bottom left raw data

description: ref640_125im_4p_200c_0d40_conv_1.tif
DOI: 10.25625/wte3oi/l5418s
title: Fig3 top right

description: AVG_ref640_250im_4p_200c_0d40_conv_1.tif
DOI: 10.25625/wte3oi
title: Figure 3

description: Data for Figure 3 All data files are standard TIFF files or text files. The TIFF files can be opened in ImageJ or Fiji. The super-resolved ISM images have been obtained from the raw data with the software provided at https://projects.gwdg.de/projects/csdism-2020.
DOI: 10.25387/g3.12725096
title: Supplemental Material for Kim et al., 2020

description: Supplementary tables for "A comprehensive, flexible collection of SARS-CoV-2 coding regions"
DOI: 10.25387/g3.12749888
title: Supplemental Material for Uebel et al., 2020

description: Supplemental Figures for Uebel et al, 2020
DOI: 10.25387/g3.12767864
title: Supplemental Material for Zurn et al., 2020

description: Four Supplementary Tables for Manuscript G3/2020/401449R1
DOI: 10.5286/isis.e.rb1690238-1
title: coherent scattering on boson peak of protein
DOI: 10.5517/ccdc.csd.cc23wdcs
title: CCDC 1962745: Experimental Crystal Structure Determination

description: Related Article: Zhenmin Li, Jianwei Xie, Li Wu, Muhammad Suleman, Ping Lu, Yanguang Wang|2020|Tetrahedron|76|131371|doi:10.1016/j.tet.2020.131371
DOI: 10.25387/g3.12725096.v1
title: Supplemental Material for Kim et al., 2020

description: Supplementary tables for "A comprehensive, flexible collection of SARS-CoV-2 coding regions"
DOI: 10.25387/g3.12749888.v1
title: Supplemental Material for Uebel et al., 2020

description: Supplemental Figures for Uebel et al, 2020
DOI: 10.25387/g3.12767864.v1
title: Supplemental Material for Zurn et al., 2020

description: Four Supplementary Tables for Manuscript G3/2020/401449R1
DOI: 10.15468/7b3y82
title: Galumna capensis dissimilis Engelbrecht, 1969, a junior synonym of Galumna lawrencei Jacot, 1940 (Acari, Oribatida, Galumnidae), with remarks on type material

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ermilov, Sergey G., Hugo-Coetzee, Elizabeth A. (2020): Galumna capensis dissimilis Engelbrecht, 1969, a junior synonym of Galumna lawrencei Jacot, 1940 (Acari, Oribatida, Galumnidae), with remarks on type material. Zootaxa 4750 (3): 441-442, DOI: https://doi.org/10.11646/zootaxa.4750.3.12
DOI: 10.15468/qeat7r
title: The advertisement call of Proceratophrys redacta (Anura, Odontophrynidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Simões, Cássio Rachid M. A., Pontes, Bruna Elizabeth Silva De, Trevisan, Camila Costa, Abreu, Rafael Oliveira De, Juncá, Flora Acuña, Solé, Mirco, Araújo, Carlos Barros De, Napoli, Marcelo Felgueiras (2020): The advertisement call of Proceratophrys redacta (Anura, Odontophrynidae). Zootaxa 4750 (3): 447-450, DOI: https://doi.org/10.11646/zootaxa.4750.3.14
DOI: 10.15468/dbhkdr
title: Larval development and osteology of Callanthias platei (Teleostei: Callanthiidae) from Desventuradas Islands, South Pacific

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zavala-Muñoz, Francisca, Bustos, Claudia A., Landaeta, Mauricio F., Stantinidis, Peter Kon- (2020): Larval development and osteology of Callanthias platei (Teleostei: Callanthiidae) from Desventuradas Islands, South Pacific. Zootaxa 4751 (1): 143-152, DOI: https://doi.org/10.11646/zootaxa.4751.1.8
DOI: 10.15468/mxj7se
title: Tracing the roots: clarification on the type locality of Halobates sexualis Distant (Heteroptera: Gerridae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Samuel, Amos Shem (2020): Tracing the roots: clarification on the type locality of Halobates sexualis Distant (Heteroptera: Gerridae). Zootaxa 4755 (2): 399-400, DOI: https://doi.org/10.11646/zootaxa.4755.2.13
DOI: 10.15468/2wyegn
title: Replacement name for the cicada genus Pycnoides Sanborn, 2020 (Hemiptera: Cicadidae: Cicadinae: Platypleurini) and sixteen new combinations

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sanborn, Allen F. (2020): Replacement name for the cicada genus Pycnoides Sanborn, 2020 (Hemiptera: Cicadidae: Cicadinae: Platypleurini) and sixteen new combinations. Zootaxa 4759 (4): 591-592, DOI: https://doi.org/10.11646/zootaxa.4759.4.10
DOI: 10.15468/qved24
title: On the taxonomy of the desert lizard Liolaemus stolzmanni (Steindachner, 1891) A third point of view (Squamata: Liolaemidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Troncoso-Palacios, Jaime, Escobar-Gimpel, Víctor (2020): On the taxonomy of the desert lizard Liolaemus stolzmanni (Steindachner, 1891) A third point of view (Squamata: Liolaemidae). Zootaxa 4763 (1): 138-144, DOI: https://doi.org/10.11646/zootaxa.4763.1.12
DOI: 10.25386/genetics.12597794
title: Supplemental Material for Que et al., 2020

description: Supplemental tables; Supplemental figures; Intermediate data files for generating main and supplemental figures (zipped), R markdown files for generating main and supplemental figures (zipped)
DOI: 10.25386/genetics.12597794.v2
title: Supplemental Material for Que et al., 2020

description: Supplemental tables; Supplemental figures; Intermediate data files for generating main and supplemental figures (zipped), R markdown files for generating main and supplemental figures (zipped)
DOI: 10.25386/genetics.12597794.v1
title: Supplemental Material forQue et al., 2020

description: Supplemental tables; Supplemental figures; Intermediate data files for generating main and supplemental figures (zipped), R markdown files for generating main and supplemental figures (zipped)
DOI: 10.15468/x8yzm2
title: Mabuia wirzi Roux, 1925 (Squamata: Scincidae), an overlooked synonym of Dasia olivacea Gray, 1839, with notes on the synonymy of Dasia olivacea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Shea, Glenn M., Iskandar, Djoko T. (2020): Mabuia wirzi Roux, 1925 (Squamata: Scincidae), an overlooked synonym of Dasia olivacea Gray, 1839, with notes on the synonymy of Dasia olivacea. Zootaxa 4763 (1): 145-150, DOI: https://doi.org/10.11646/zootaxa.4763.1.13
DOI: 10.5281/zenodo.3974814
title: Chromosight benchmarks and processed data

description: Input data and scripts required to rerun chromosight's benchmarks and associated figures, as well as output results in text format. The record contains 2 tarballs corresponding to two different benchmarks. Each tarball contains the scripts, input and output data of its benchmark: <strong>Performance benchmark:</strong> This benchmark is contained in "20200406_benchmark_chromosight_performance.tar.gz" and compares chromosight running time and RAM use with 2 other softwares. This benchmark is run on a real high resolution human Hi-C matrix with different subsampling values. Benchmark scripts are expected to be run on a regular laptop or desktop. <strong>Results benchmark:</strong> This benchmark is contained in "20200406_benchmark_chromosight_results.tar.gz" and assess chromosight's ability to detect chromatin loop patterns on Hi-C contact maps. Chromosight is compared to 4 other softwares. For each software, precision, recall (=sensitivity) and F1 scores are measured using 2000 small synthetic Hi-C matrices with known loop coordinates. Each software is run with a range of 50-200 parameter combinations for all data. Scripts to run this benchmark are written to run as a job array on a SLURM computing cluster to reduce compute time. <strong>Processed data files</strong> The contact matrices in cool format, which are used to generate figures throughout the manuscript.
DOI: 10.15468/kbxxay
title: Tachiramantis lassoalcalai (Barrio-Amorós, Rojas-Runjaic & Barros, 2010) (Anura, Craugastoridae): a new combination revealed by molecular evidence, with a description of its advertisement call

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rojas-Runjaic, Fernando J. M., Echevarría, Lourdes Y., Becerra-Rondón, Adriana C., Infante-Rivero, Edwin E. (2020): Tachiramantis lassoalcalai (Barrio-Amorós, Rojas-Runjaic & Barros, 2010) (Anura, Craugastoridae): a new combination revealed by molecular evidence, with a description of its advertisement call. Zootaxa 4778 (2): 372-382, DOI: https://doi.org/10.11646/zootaxa.4778.2.8
DOI: 10.5519/qd.qnom0z4x
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1279 records)
DOI: 10.6073/pasta/638d6486ab43b0d420b4341dcac90ef8
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 2 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.6073/pasta/e5dcd882ba378f5836cfafe8608ce87c
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 2 meteorological station: 1-hour summary data: 2017 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-2 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/45f16eb86dc2d0430372354eecff7283
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 2 meteorological station: Daily summary data: 2013 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-2 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/988a003dcb2f8d71c92e23c6eab00ec5
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 10 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.15468/vn6ujc
title: The identity of Chelodina oblonga Gray 1841 (Testudines: Chelidae) reassessed

description: This dataset contains the digitized treatments in Plazi based on the original journal article Shea, Glenn, Thomson, Scott, Georges, Arthur (2020): The identity of Chelodina oblonga Gray 1841 (Testudines: Chelidae) reassessed. Zootaxa 4779 (3): 419-437, DOI: https://doi.org/10.11646/zootaxa.4779.3.9
DOI: 10.6073/pasta/ed4bc917626b44ad61afd3cea893efaf
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 10 meteorological station: 1-hour summary data: 2017 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-10 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/35104b19d3a2aa3da1dd8d1d1401b8fd
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 10 meteorological station: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily Average of 30-minute Soil Volumetric Water Content data at 10 cm at CSIS Block-10. Collection of soil water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured every 30 minutes at 10 cm depth at 3 locations at each of the 4 plots per block and averaged for the daily value. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded at an automated meteorological station installed at Jornada LTER CSIS Block-10 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/1688b2976b2574171f0cdb5cde704e0c
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 10 meteorological station: Daily summary data: 2013 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-10 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/c95a2b422ddce3e8bb607138aa95d214
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 10 meteorological station: 1-second summary precipitation data: 2017 - ongoing

description: 1-second summary precipitation data at CSIS Block-10 met station. Total precipitation per second is recorded only if there is measurable precipitation. This is recorded at an automated meteorological station installed at Jornada LTER CSIS Block-10 site.. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset. IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping bucket rain gauge. If there is missing data due to equipment or other problems, there will be no indication of this within this dataset. The user needs to review precipitation values in the 30 minute or hourly summary datasets to determine if there are missing data in this 1 second detailed precipitation dataset.
DOI: 10.6073/pasta/e25688c7199b71f13601249decf78af6
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 10 meteorological station: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at 10 cm at CSIS Block-10. Collection of soil volumetric water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured at 10 cm depth at 3 locations at each of the 4 plots per block. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded every 30 minutes at an automated meteorological station installed at Jornada LTER CSIS Block-10 site. This is an ONGOING dataset.