cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8957729.v1
title: MOESM9 of Automated analysis of evolving interfaces during in situ electron microscopy

description: Additional file 9: Code S4. Code S4 is a Mathematica notebook file that gives an overview of the image processing work flow described in the text. It can be used with Video S5 to generate the raw image assets need to construct Fig. 6 in the main text.
DOI: 10.6084/m9.figshare.8957723
title: MOESM8 of Automated analysis of evolving interfaces during in situ electron microscopy

description: Additional file 8: Code S3. Code S3 is a Mathematica notebook file that gives an overview of the image processing work flow described in the text. It can be used with Video S4 to generate the raw image assets need to construct Fig. 5 in the main text.
DOI: 10.6084/m9.figshare.8957720
title: Additional file 2: of MatHaz: a Matlab code to assist with probabilistic spatio-temporal volcanic hazard assessment in distributed volcanic fields

description: Excel template for obtaining the parameters Î´ and Î¸ of a Weibull function. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.8957717
title: MOESM7 of Automated analysis of evolving interfaces during in situ electron microscopy

description: Additional file 7: Code S2. Code S2 is a Mathematica notebook file that gives an overview of the image processing work flow described in the text. It can be used with Video S3 to generate the raw image assets need to construct Fig. 3 in the main text.
DOI: 10.6084/m9.figshare.8957720.v1
title: Additional file 2: of MatHaz: a Matlab code to assist with probabilistic spatio-temporal volcanic hazard assessment in distributed volcanic fields

description: Excel template for obtaining the parameters Î´ and Î¸ of a Weibull function. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.8957726.v1
title: Additional file 3: of MatHaz: a Matlab code to assist with probabilistic spatio-temporal volcanic hazard assessment in distributed volcanic fields

description: Excel file containing the topography of the CLV area written in ASCII format. (XLSX 1035 kb)
DOI: 10.6084/m9.figshare.8957714
title: Additional file 1: of MatHaz: a Matlab code to assist with probabilistic spatio-temporal volcanic hazard assessment in distributed volcanic fields

description: Excel file containing sheets for different volcano-structural datasets for the CLV. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.8957723.v1
title: MOESM8 of Automated analysis of evolving interfaces during in situ electron microscopy

description: Additional file 8: Code S3. Code S3 is a Mathematica notebook file that gives an overview of the image processing work flow described in the text. It can be used with Video S4 to generate the raw image assets need to construct Fig. 5 in the main text.
DOI: 10.6084/m9.figshare.8957711
title: MOESM6 of Automated analysis of evolving interfaces during in situ electron microscopy

description: Additional file 6: Code S1. Code S1 is a Mathematica notebook file that gives an overview of the image processing work flow described in the text. It can be used with Video S2 to generate the raw image assets need to construct Figs. 1, 2 in the main text. AÂ narrated screencast outlining the use of this file can be found in Video S1.
DOI: 10.6084/m9.figshare.8957717.v1
title: MOESM7 of Automated analysis of evolving interfaces during in situ electron microscopy

description: Additional file 7: Code S2. Code S2 is a Mathematica notebook file that gives an overview of the image processing work flow described in the text. It can be used with Video S3 to generate the raw image assets need to construct Fig. 3 in the main text.
DOI: 10.6084/m9.figshare.8957714.v1
title: Additional file 1: of MatHaz: a Matlab code to assist with probabilistic spatio-temporal volcanic hazard assessment in distributed volcanic fields

description: Excel file containing sheets for different volcano-structural datasets for the CLV. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.8957711.v1
title: MOESM6 of Automated analysis of evolving interfaces during in situ electron microscopy

description: Additional file 6: Code S1. Code S1 is a Mathematica notebook file that gives an overview of the image processing work flow described in the text. It can be used with Video S2 to generate the raw image assets need to construct Figs. 1, 2 in the main text. AÂ narrated screencast outlining the use of this file can be found in Video S1.
DOI: 10.6084/m9.figshare.8957666
title: Additional file 3: of Effects of participatory learning and action with womenâ s groups, counselling through home visits and crĂ¨ches on undernutrition among children under three years in eastern India: a quasi-experimental study

description: Dataset. (CSV 3605 kb)
DOI: 10.6084/m9.figshare.8957666.v1
title: Additional file 3: of Effects of participatory learning and action with womenâ s groups, counselling through home visits and crĂ¨ches on undernutrition among children under three years in eastern India: a quasi-experimental study

description: Dataset. (CSV 3605 kb)
DOI: 10.6084/m9.figshare.8957408
title: Additional file 2: of AluMine: alignment-free method for the discovery of polymorphic Alu element insertions

description: Table S1 showing frequencies of Alu signature sequences. Table S2 showing filtering statistics based on genotyping of EGP individuals. Table S3 showing results of REF- element discovery in two CEPH families. Table S4 and Table S5 summarizing results of PCR validation. TableS6 showing PCR primer sequences and PCR product lengths. (XLSX 2079 kb)
DOI: 10.6084/m9.figshare.8957408.v1
title: Additional file 2: of AluMine: alignment-free method for the discovery of polymorphic Alu element insertions

description: Table S1 showing frequencies of Alu signature sequences. Table S2 showing filtering statistics based on genotyping of EGP individuals. Table S3 showing results of REF- element discovery in two CEPH families. Table S4 and Table S5 summarizing results of PCR validation. TableS6 showing PCR primer sequences and PCR product lengths. (XLSX 2079 kb)
DOI: 10.6084/m9.figshare.8957075
title: PLoS_One_FPGA_Calhoun_CZO_soil_gas_data

description: This dataset of deep soil oxygen and carbon dioxide concentrations spans two years of observations from observational research in: hardwood forests, pine forests, and agricultural fields. An accompanying dataset includes the locations of buried PVC chambers used to sample and analyze soil air. The specific names of research plots in the soil gas concentration dataset have been removed as they are not pertinent for the current manuscript under revision which is entirely focused on the methodological development of the apparatus designed and used over the course of this research. Because there is a plot of one treatment's (hardwood forest) average O<sub>2</sub> and CO<sub>2 </sub>the treatment "H" for hardwood forests was preserved. All other data points had simply been used in validation analyses comparing gas-chromatography CO<sub>2</sub> measurements to field measurements and, as such, their treatments have no bearing in the methods paper to be published in PLoS. All statistical analyses were conducted on field and laboratory measurements obtained via the "FPGA" contained in this soil gas measurement dataset. The gap-filled column in this soil gas dataset was solely used for visualization when plotting heatmaps.
DOI: 10.6084/m9.figshare.8957075.v1
title: PLoS_One_FPGA_Calhoun_CZO_soil_gas_data

description: This dataset of deep soil oxygen and carbon dioxide concentrations spans two years of observations from observational research in: hardwood forests, pine forests, and agricultural fields. An accompanying dataset includes the locations of buried PVC chambers used to sample and analyze soil air. The specific names of research plots in the soil gas concentration dataset have been removed as they are not pertinent for the current manuscript under revision which is entirely focused on the methodological development of the apparatus designed and used over the course of this research. Because there is a plot of one treatment's (hardwood forest) average O<sub>2</sub> and CO<sub>2 </sub>the treatment "H" for hardwood forests was preserved. All other data points had simply been used in validation analyses comparing gas-chromatography CO<sub>2</sub> measurements to field measurements and, as such, their treatments have no bearing in the methods paper to be published in PLoS. All statistical analyses were conducted on field and laboratory measurements obtained via the "FPGA" contained in this soil gas measurement dataset. The gap-filled column in this soil gas dataset was solely used for visualization when plotting heatmaps.
DOI: 10.6084/m9.figshare.8956997
title: Peruvian Scientific Journal Titles in Emerging Sources Citation Index-Web of Science (June-2019)

description: Data is part current research around a thesis degree in Spanish intitled "Calidad editorial, impacto científico y visibilidad web de las revistas científicas de universidades peruanas". Incluye general metrics about 22 scientific and scholary journal published by universities and other editorial types indexing at Emerging Sources Citation Index (WoS) updated on June, 2019.
DOI: 10.6084/m9.figshare.8956964
title: grid.264756.4

description: Network Graphs for institution grid.264756.4 created for "What Does a University Look Like?" poster
DOI: 10.6084/m9.figshare.8956964.v1
title: grid.264756.4

description: Network Graphs for institution grid.264756.4 created for "What Does a University Look Like?" poster
DOI: 10.6084/m9.figshare.8956955
title: Ecological and Distributional Databases for Neotropical Birds

description: This dataset is uploaded to FigShare by Jacob B. Socolar in support of a forthcoming publication. The University of Chicago Press has granted permission to JBS to upload and publish these data. <br>USERS OF THESE DATA SHOULD CITE THE ORIGINAL PUBLICATION:<br>Theodore A. Parker III, Douglas F. Stotz, and John W. Fitzpatrick (1996) Ecological and Distributional Databases for Neotropical Birds. University of Chicago Press, Chicago. ISBN: 9780226646763<br><br>See also:https://www.press.uchicago.edu/ucp/books/book/chicago/E/bo3618705.html <br>The file "Parker_Stotz_Fitzpatrick_1996.zip" unarchives to a folder called "Parker_Stotz_Fitzpatrick_1996". That folder contains three items:<br>1) readme.txt is a read-me document that contains some additional details in addition to repeating the information below.<br>2) license.pdf is a copy of the license granted to Jacob Socolar by University of Chicago Press to re-publish these data on figshare.com (license states "datadryad.org or a similar repository")<br>3) The 'databases' folder contains the files published as:Theodore A. Parker III, Douglas F. Stotz, and John W. Fitzpatrick (1996) Ecological and Distributional Databases for Neotropical Birds. University of Chicago Press, Chicago. ISBN: 9780226646763<br>See also:https://www.press.uchicago.edu/ucp/books/book/chicago/E/bo3618705.html <br>These databases were originally published as a companion to the book "Neotropical Birds: Ecology and Conservation", by Douglas F. Stotz, John W. Fitzpatrick, Theodore A. Parker III, and Debra K. Moskovits, copyright 1996 University of Chicago Press.<br>If using the data provided in this folder, please cite the references provided above. This item on FigShare (with date 2019) should not replace or supersede the above citations.
DOI: 10.26180/5d369804283f0
title: GTDB_r89_54k

description: A collection of (compressed) index database files suitable for use with Centrifuge, Kraken1 and Kraken2 that can be used to classify metagenomes using the GTDB_r89_54k index. More information and details at: https://github.com/rrwick/Metagenomics-Index-Correction<br>
DOI: 10.6084/m9.figshare.8956943
title: 00-plotting-with-collab

description: taken in a descicator
DOI: 10.6084/m9.figshare.8956892
title: CCDB_8141.jpg

description: Morphology of mitochondria in peripheral nerves
DOI: 10.6084/m9.figshare.8956943.v2
title: 00-plotting-with-collab

description: taken in a descicator
DOI: 10.6084/m9.figshare.8956892.v1
title: CCDB_8141.jpg

description: Morphology of mitochondria in peripheral nerves
DOI: 10.26180/5d36975febd05
title: NCBI_r88_Human17k

description: A collection of (compressed) index database files suitable for use with Centrifuge, Kraken1 and Kraken2 that can be used to classify metagenomes using the NCBI_r88_Human17k index, as described in Meric, Wick et al. (2019) manuscript. More information and details at: https://github.com/rrwick/Metagenomics-Index-Correction<br>
DOI: 10.6084/m9.figshare.8956808
title: Rice Oil for Treatment of Cutaneous Punch Wounds in Rats: local and systemic effects

description: This study evaluated the local and systemic effects of the topical use of rice oil in healing ulcers. Punch skin wounds were produced on the dorsum of thirty rats, and saline solut<b>i</b>on, mineral oil or rice oil were topically administered. The healing process was evaluated (blindly) by histology (optical microscopy to evaluate cellularity), quantification of cytokines and adipokines <i>in situ</i>, in real-time PCR and with serum by ELISA.
DOI: 10.23641/asha.8956775
title: A comprehensive evaluation of tinnitus apps (Deshpande & Shimunova, 2019)

description: <b>Purpose:</b> The use of mobile phones is on the rise worldwide. Many people who experience tinnitus often turn to the Internet and applications (apps) on their smartphones to acquire information on tinnitus and solutions to “cure” tinnitus. The aim of this study was to evaluate and summarize features offered by tinnitus-related apps on different mobile platforms.<b>Method: </b>This study was conducted on 3 mobile platforms— Apple iOS, Google Android, and Windows. The key word <i>tinnitus </i>was searched, and all free and paid apps were downloaded. Relevant apps were reviewed in-depth and then classified into 4 categories based on their functionality—“tinnitus education, awareness, and prevention,” “tinnitus assessment and measurement,” “tinnitus management,” and “misinformation.”<b>Results: </b>All mobile platforms yielded both free and paid tinnitus apps, allowing individuals to learn more about tinnitus, assess and measure their own tinnitus, gain access to different sounds to help manage their tinnitus, and find strategies to better cope with their tinnitus. The Google Android platform revealed the most number of tinnitus apps. The “tinnitus management” category consistently outperformed the other categories—containing the most number of apps and the most number of features. A small proportion of misinformation apps were detected across platforms. There were no significant differences in the total number of features between free and paid apps (except on the Windows platform). A cost–feature analysis revealed that more expensive apps did not necessarily offer more number of features.<b>Conclusions:</b> This study reveals that a variety of tinnitus-related apps—both free and paid—are available on different mobile platforms. Clinicians should be aware that patients with tinnitus often rely on apps for additional help and should be prepared to direct them to valid apps. Implications for end users are discussed as well.<br><b>Supplemental Material S1. </b>List of tinnitus apps and associated features available on the iOS mobile platform.<br><b>Supplemental Material S2. </b>List of tinnitus apps and associated features available on the Android mobile platform.<br><b>Supplemental Material S3. </b>List of tinnitus apps and associated features available on the Windows mobile platform. <br>Deshpande, A. K., & Shimunova, T. (2019). A comprehensive evaluation of tinnitus apps.<i> American Journal of Audiology, 28, </i>605–616<i>. </i>https://doi.org/10.1044/2019_AJA-18-0135
DOI: 10.6084/m9.figshare.8956808.v1
title: Rice Oil for Treatment of Cutaneous Punch Wounds in Rats: local and systemic effects

description: This study evaluated the local and systemic effects of the topical use of rice oil in healing ulcers. Punch skin wounds were produced on the dorsum of thirty rats, and saline solut<b>i</b>on, mineral oil or rice oil were topically administered. The healing process was evaluated (blindly) by histology (optical microscopy to evaluate cellularity), quantification of cytokines and adipokines <i>in situ</i>, in real-time PCR and with serum by ELISA.
DOI: 10.23641/asha.8956775.v1
title: A comprehensive evaluation of tinnitus apps (Deshpande & Shimunova, 2019)

description: <b>Purpose:</b> The use of mobile phones is on the rise worldwide. Many people who experience tinnitus often turn to the Internet and applications (apps) on their smartphones to acquire information on tinnitus and solutions to “cure” tinnitus. The aim of this study was to evaluate and summarize features offered by tinnitus-related apps on different mobile platforms.<b>Method: </b>This study was conducted on 3 mobile platforms— Apple iOS, Google Android, and Windows. The key word <i>tinnitus </i>was searched, and all free and paid apps were downloaded. Relevant apps were reviewed in-depth and then classified into 4 categories based on their functionality—“tinnitus education, awareness, and prevention,” “tinnitus assessment and measurement,” “tinnitus management,” and “misinformation.”<b>Results: </b>All mobile platforms yielded both free and paid tinnitus apps, allowing individuals to learn more about tinnitus, assess and measure their own tinnitus, gain access to different sounds to help manage their tinnitus, and find strategies to better cope with their tinnitus. The Google Android platform revealed the most number of tinnitus apps. The “tinnitus management” category consistently outperformed the other categories—containing the most number of apps and the most number of features. A small proportion of misinformation apps were detected across platforms. There were no significant differences in the total number of features between free and paid apps (except on the Windows platform). A cost–feature analysis revealed that more expensive apps did not necessarily offer more number of features.<b>Conclusions:</b> This study reveals that a variety of tinnitus-related apps—both free and paid—are available on different mobile platforms. Clinicians should be aware that patients with tinnitus often rely on apps for additional help and should be prepared to direct them to valid apps. Implications for end users are discussed as well.<br><b>Supplemental Material S1. </b>List of tinnitus apps and associated features available on the iOS mobile platform.<br><b>Supplemental Material S2. </b>List of tinnitus apps and associated features available on the Android mobile platform.<br><b>Supplemental Material S3. </b>List of tinnitus apps and associated features available on the Windows mobile platform. <br>Deshpande, A. K., & Shimunova, T. (2019). A comprehensive evaluation of tinnitus apps.<i> American Journal of Audiology, 28, </i>605–616<i>. </i>https://doi.org/10.1044/2019_AJA-18-0135
DOI: 10.6084/m9.figshare.8956715
title: Workshop1
DOI: 10.6084/m9.figshare.8956712
title: Major bias and knowledge gaps on fragmentation research in a megadiverse country

description: Data from: Major bias and knowledge gaps on fragmentation research in a megadiverse country
DOI: 10.6084/m9.figshare.8956694
title: grid.253615.6

description: Network Graphs for institution grid.253615.6 created for "What Does a University Look Like?" poster
DOI: 10.6084/m9.figshare.8956694.v1
title: grid.253615.6

description: Network Graphs for institution grid.253615.6 created for "What Does a University Look Like?" poster
DOI: 10.6084/m9.figshare.8956649
title: M2.r2.peaks.fixed.bb

description: aaa
DOI: 10.6084/m9.figshare.8956649.v1
title: M2.r2.peaks.fixed.bb

description: aaa
DOI: 10.6084/m9.figshare.8956550
title: Comparative genomics of the fish pathogens Edwardsiella ictaluri 93-146 and Edwardsiella piscicida C07-087

description: Supplementary Material for 'Comparative genomics of the fish pathogens <i>Edwardsiella ictaluri</i> 93-146 and <i>Edwardsiella piscicida</i> C07-087' as published in <i>Microbial Genomics</i><br>
DOI: 10.6084/m9.figshare.8956550.v1
title: Comparative genomics of the fish pathogens Edwardsiella ictaluri 93-146 and Edwardsiella piscicida C07-087

description: Supplementary Material for 'Comparative genomics of the fish pathogens <i>Edwardsiella ictaluri</i> 93-146 and <i>Edwardsiella piscicida</i> C07-087' as published in <i>Microbial Genomics</i><br>
DOI: 10.6084/m9.figshare.8956481
title: Microbial responses to warming enhance soil carbon loss following translocation across a tropical forest elevation gradient

description: Sequence and meta-data for article 'Microbial responses to warming enhance soil carbon loss following translocation across a tropical forest elevation gradient'<br>Please disregard earlier versions, which contain errors.
DOI: 10.6084/m9.figshare.8956481.v3
title: Microbial responses to warming enhance soil carbon loss following translocation across a tropical forest elevation gradient

description: Sequence and meta-data for article 'Microbial responses to warming enhance soil carbon loss following translocation across a tropical forest elevation gradient'<br>Please disregard earlier versions, which contain errors.
DOI: 10.6084/m9.figshare.8956481.v2
title: Microbial responses to warming enhance soil carbon loss following translocation across a tropical forest elevation gradient

description: sequence and meta-data for article 'Microbial responses to warming enhance soil carbon loss following translocation across a tropical forest elevation gradient'
DOI: 10.6084/m9.figshare.8955170
title: grid.168010.e

description: Network Graphs for institution grid.168010.e created for "What Does a University Look Like?" poster
DOI: 10.6084/m9.figshare.8953607
title: SPOT_Reference_Database

description: This is the version 2 of our in house (Fuhrman Lab @ USC) reference genome database. It is composed from metagenomically assembled genomes from the San Pedro Ocean Time Series (SPOT).<br>
DOI: 10.6084/m9.figshare.8953559
title: The genetic relationships within <i>Apiognomonia errabunda</i> and related species

description: Species of <i>Apiognomonia</i> are some of the most ubiquitous leaf-associated fungi of broad-leaved trees of the northern temperate zone. Especially widespread and diverse is <i>Apiognomonia errabunda</i>, found mostly on beech, oak, and linden. This species and its closest relatives are known for their complicated phylogenetic relationships that have caused considerable confusion in the past. In the present paper, we describe the results of a three-gene-based reconstruction of phylogenetic relationships between <i>A. errabunda, A. veneta</i>, and <i>A. hystrix</i> for 373 isolates. Using combined information from the nuc rDNA internal transcribed spacer region ITS1‐5.8S‐ITS2 (ITS barcode) and intron regions of actin (<i>ACT</i>) and calmodulin (<i>CAL</i>) genes for 263 isolates, we confirmed the occurrence of host-associated lineages within <i>A. errabunda</i>. However, the clustering of isolates by host species was incomplete: some isolates occurred on the “wrong” hosts and a number of isolates carried mixed genetic profile, indicating substantial level of inter-host group recombination. In addition, a number of isolates were identified as putative, pending further verification, interspecies hybrids between the much more divergent <i>A. errabunda</i> and <i>A. hystrix</i>.