cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.5u0ito
title: Occurrence Download

description: A dataset containing 10607 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Desmidiaceae Engels"
 ]
}

 The dataset includes 10607 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000131-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.73429j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Meuschenia freycineti)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188446-230224095556074/datasets/export for details.
DOI: 10.15468/dl.odrouv
title: Occurrence Download

description: A dataset containing 290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Poicephalus flavifrons (Ruppell, 1845)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 290 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022000-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p3uqw1
title: Occurrence Download

description: A dataset containing 770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sicyos angulatus L.",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Specimen"
 ]
 },
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 770 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000131-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jhapei
title: Occurrence Download

description: A dataset containing 260 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinella bergi (Céspedez, 2000)"
 ]
}

 The dataset includes 260 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010368-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gj392d
title: Occurrence Download

description: A dataset containing 469 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "Country is United States of America",
 "Geometry POLYGON((-96.68705 48.93104,-96.6514 43.38727,-90.8046 43.4764,-91.55328 44.01117,-91.62458 45.54417,-91.00068 46.77414,-90.50157 46.86327,-89.55681 48.05758,-94.61928 48.87756,-94.70841 49.41233,-95.22535 49.44798,-95.261 49.05582,-96.68705 48.93104))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Centaurea stoebe L."
 ]
}

 The dataset includes 469 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004489-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zfwty
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Enoplosus armatus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188461-230224095556074/datasets/export for details.
DOI: 10.15468/dl.ultna9
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ateles fusciceps fusciceps"
 ]
}

 The dataset includes 40 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000131-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mxkk4c
title: Occurrence Download

description: A dataset containing 3370 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Biodiversity assessment in the Yangambi Biosphere Reserve"
 ]
}

 The dataset includes 3370 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129254-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bi0ebl
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cameroon",
 "TaxonKey is Ledermanniella cristata (Engl.) C.Cusset"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000131-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jcd3u6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Cirripectes hutchinsi)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188497-230224095556074/datasets/export for details.
DOI: 10.15468/dl.5nd5wt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Panulirus cygnus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188489-230224095556074/datasets/export for details.
DOI: 10.15468/dl.b7rg8r
title: Occurrence Download

description: A dataset containing 1285 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Iguana iguana (Linnaeus, 1758)"
 ]
}

 The dataset includes 1285 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129266-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.17126171.v1
title: Additional file 3 of Comparative transcriptomic analysis of gonadal development and renewal in the ovoviviparous black rockfish (Sebastes schlegelii)

description: Additional file 3: Table S3. Key DEGs in each KEGG pathway identified in the testes at different developmental stages.
DOI: 10.6084/m9.figshare.17126174.v1
title: Additional file 4 of Comparative transcriptomic analysis of gonadal development and renewal in the ovoviviparous black rockfish (Sebastes schlegelii)

description: Additional file 4: Table S4. Significantly enriched DEGs in the ovaries of black rockfish at different developmental stages.
DOI: 10.6084/m9.figshare.7164686
title: Additional file 1: of Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis glomerata L.)

description: Table S1. Summary statistics of RNA sequencing in different samples. Table S2. Summary of transcriptome sequencing for D. glomerata. Table S3. Summary statistics of the quality of sRNA sequencing. Table S4. Summary statistics of sRNA sequencing in samples from different stages. Table S5. Summary statistics of sRNA mapping results. Table S6. Length distribution of total sRNA. Table S7. Summary statistics and Length distribution of known miRNAs and novel miRNAs. Table S8. Statistics of differentially expressed miRNAs. Table S9. The targets of differentially expressed miRNAs. Table S10. Statistics for significant DEGs. (XLSX 313 kb)
DOI: 10.5281/zenodo.10679418
title: THE JADID MOVEMENT FROM THE POINT OF VIEW OF FOREIGN SCIENTISTS
DOI: 10.5281/zenodo.10679419
title: THE JADID MOVEMENT FROM THE POINT OF VIEW OF FOREIGN SCIENTISTS
DOI: 10.6084/m9.figshare.10311392
title: Table S11 from Multivariable regulation of gene expression plasticity in metazoans

description: An important capacity of genes is the rapid change of expression levels to cope with environment, known as expression responsiveness or plasticity. Elucidating the genomic mechanisms determining expression plasticity is critical for understanding the molecular basis of phenotypic plasticity, fitness and adaptation. In this study, we systematically quantified gene expression plasticity in four metazoan species by integrating changes of expression levels under a large number of genetic and environmental conditions. From this, we demonstrated that expression plasticity measures a distinct feature of gene expression that is orthogonal to other well-studies features including gene expression level and tissue specificity/broadness. Expression plasticity is conserved across species with important physiological implications. The magnitude of expression plasticity is highly correlated with gene function and genes with high plasticity are implicated in disease susceptibility. Genome-wide analysis identified many conserved promoter <i>cis</i>-elements, <i>trans</i>-acting factors (such as CFCF), and gene body histone modifications (H3K36me3, H3K79me2 and H4K20me1) that are significantly associated with expression plasticity. Analysis of expression changes in perturbation experiments further validated a causal role of specific transcription factors and histone modifications. Collectively, this work reveals general properties, physiological implications and multivariable regulation of gene expression plasticity in metazoans, extending the mechanistic understanding of gene regulation.
DOI: 10.6084/m9.figshare.10311416.v1
title: Table S8 from Multivariable regulation of gene expression plasticity in metazoans

description: An important capacity of genes is the rapid change of expression levels to cope with environment, known as expression responsiveness or plasticity. Elucidating the genomic mechanisms determining expression plasticity is critical for understanding the molecular basis of phenotypic plasticity, fitness and adaptation. In this study, we systematically quantified gene expression plasticity in four metazoan species by integrating changes of expression levels under a large number of genetic and environmental conditions. From this, we demonstrated that expression plasticity measures a distinct feature of gene expression that is orthogonal to other well-studies features including gene expression level and tissue specificity/broadness. Expression plasticity is conserved across species with important physiological implications. The magnitude of expression plasticity is highly correlated with gene function and genes with high plasticity are implicated in disease susceptibility. Genome-wide analysis identified many conserved promoter <i>cis</i>-elements, <i>trans</i>-acting factors (such as CFCF), and gene body histone modifications (H3K36me3, H3K79me2 and H4K20me1) that are significantly associated with expression plasticity. Analysis of expression changes in perturbation experiments further validated a causal role of specific transcription factors and histone modifications. Collectively, this work reveals general properties, physiological implications and multivariable regulation of gene expression plasticity in metazoans, extending the mechanistic understanding of gene regulation.
DOI: 10.6084/m9.figshare.7164989
title: Additional file 1: of In Situ Electrospinning Iodine-Based Fibrous Meshes for Antibacterial Wound Dressing

description: Figure. S1. Pore size distribution of the as-spun PVP/I (a-a3), PVP/PVPI (b-b3) and PVB/PVPI(c-c3) fibrous mats with concentration of I/PVPI 0%, 1%, 2% and 5%, respectively. Figure S2. Electrospun PVP-I meshes onto human injured finger, can stem the bleeding quickly, and then heal the wound well. Figure S3. In situ electrospun PVP/I meshes onto human hand and finger, the as-spun meshes showed good conformability on the finger. (ZIP 24007 kb)
DOI: 10.6084/m9.figshare.10311425.v1
title: Table S10 from Multivariable regulation of gene expression plasticity in metazoans

description: An important capacity of genes is the rapid change of expression levels to cope with environment, known as expression responsiveness or plasticity. Elucidating the genomic mechanisms determining expression plasticity is critical for understanding the molecular basis of phenotypic plasticity, fitness and adaptation. In this study, we systematically quantified gene expression plasticity in four metazoan species by integrating changes of expression levels under a large number of genetic and environmental conditions. From this, we demonstrated that expression plasticity measures a distinct feature of gene expression that is orthogonal to other well-studies features including gene expression level and tissue specificity/broadness. Expression plasticity is conserved across species with important physiological implications. The magnitude of expression plasticity is highly correlated with gene function and genes with high plasticity are implicated in disease susceptibility. Genome-wide analysis identified many conserved promoter <i>cis</i>-elements, <i>trans</i>-acting factors (such as CFCF), and gene body histone modifications (H3K36me3, H3K79me2 and H4K20me1) that are significantly associated with expression plasticity. Analysis of expression changes in perturbation experiments further validated a causal role of specific transcription factors and histone modifications. Collectively, this work reveals general properties, physiological implications and multivariable regulation of gene expression plasticity in metazoans, extending the mechanistic understanding of gene regulation.
DOI: 10.6084/m9.figshare.17126168.v1
title: Additional file 2 of Comparative transcriptomic analysis of gonadal development and renewal in the ovoviviparous black rockfish (Sebastes schlegelii)

description: Additional file 2: Table S2. Information on the total raw reads and clean reads of 18 gonadal transcripts obtained at different developmental stages.
DOI: 10.6084/m9.figshare.17126276.v1
title: Gastrodin attenuates perfluorooctanoic acid-induced liver injury by regulating gut microbiota composition in mice

description: Perfluorooctanoic acid (PFOA) can accumulate in the livers of humans and animals via the food chain, resulting into liver injury, which is closely related to intestinal flora dysbiosis. Gastrodin has been reported to have hepatoprotective effect. However, whether gastrodin can alleviate PFOA-induced liver injury via modulating gut microbiota remains unclear. Herein, a PFOA-induced liver injury model was established by gavage of PFOA (5 mg/kg body weight) in 2% Tween 80 solution once daily for 6 weeks in mice, and then gastrodin in saline (20 mg/kg body weight) was used once daily for 8 weeks to treat liver damage. The biochemical indexes associated with liver function, oxidative stress, and inflammatory factors were examined. Hematoxylin-eosin staining was used to determine the liver histopathological changes. Besides, 16S rRNA sequencing was used to analyze the difference of gut microbiota between the model and treatment groups. The results showed that gastrodin significantly improved the oxidative stress caused by PFOA. Intestinal flora analysis showed that gastrodin treatment significantly increased the relative abundance of probiotics, such as <i>Lactobacillus, Bifidobacterium,</i> and <i>Bacteroides</i>, while the harmful bacteria, including <i>Desulfovibrio</i> were decreased. Gastrodin treatment also significantly increased the level of short-chain fatty acids (SCFAs), such as butyric acid and isobutyric acid. Spearman correlation analysis showed that the composition changes of gut microbiota and SCFAs increase were both beneficial to alleviate the liver injury caused by PFOA. To sum up, gastrodin can effectively alleviate PFOA-induced liver injury through regulating gut microbiota composition.
DOI: 10.6084/m9.figshare.7164989.v1
title: Additional file 1: of In Situ Electrospinning Iodine-Based Fibrous Meshes for Antibacterial Wound Dressing

description: Figure. S1. Pore size distribution of the as-spun PVP/I (a-a3), PVP/PVPI (b-b3) and PVB/PVPI(c-c3) fibrous mats with concentration of I/PVPI 0%, 1%, 2% and 5%, respectively. Figure S2. Electrospun PVP-I meshes onto human injured finger, can stem the bleeding quickly, and then heal the wound well. Figure S3. In situ electrospun PVP/I meshes onto human hand and finger, the as-spun meshes showed good conformability on the finger. (ZIP 24007 kb)
DOI: 10.6084/m9.figshare.17126177.v1
title: Additional file 5 of Comparative transcriptomic analysis of gonadal development and renewal in the ovoviviparous black rockfish (Sebastes schlegelii)

description: Additional file 5: Table S5. Primers used in quantitative real-time PCR (qPCR) validation.
DOI: 10.6084/m9.figshare.7164725.v1
title: Additional file 3: of Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis glomerata L.)

description: Table S11. The primers used for qRT-PCR. Table S12. Targets of miRNAs in the BV stage, VE stage, and AV stage. Table S13. Statistics for GO enrichment results. Table S14. DEGs in the VE-BV-UP vs AV-VE-DOWN and VE-BV-DOWN vs AV-VE-UP comparisons. Table S15. Concerned DEGs in the VE-BV, AV-VE, and HT-BH comparison. Table S16. The genes in the brown-module. Table S17. The targets of miR530. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.7164944.v1
title: Additional file 1: of Circular RNA BCRC-3 suppresses bladder cancer proliferation through miR-182-5p/p27 axis

description: Table S1. Clinicopathological features of 47Â BC patients and the expression of BCRC-3 and miR-182-5p. Table S2 Detailed information of primers and RNA sequences used in this study. (ZIP 22 kb)
DOI: 10.6084/m9.figshare.17126210
title: Additional file 3 of Combining QTL-seq and linkage mapping to uncover the genetic basis of single vs. paired spikelets in the advanced populations of two-ranked maize×teosinte

description: Additional file 3: Table S3. Genotypes and phenotypes of the mapping populations using traditional QTL mapping.
DOI: 10.5281/zenodo.10679175
title: Data set for "Continuous adiabatic frequency conversion for FMCW-LiDAR"

description: The repository contains raw data and processing scripts for the manuscript “Continuous adiabatic frequency conversion for FMCW-LiDAR”.

Acknowledgements:

This work was financially supported by the German Research Foundation, DFG (Grant No. BR 4194/12-1) and by the Federal Ministry of Education and Research, BMBF (Grant No. 13N16555).
DOI: 10.5281/zenodo.10679176
title: Data set for "Continuous adiabatic frequency conversion for FMCW-LiDAR"

description: The repository contains raw data and processing scripts for the manuscript “Continuous adiabatic frequency conversion for FMCW-LiDAR”.

Acknowledgements:

This work was financially supported by the German Research Foundation, DFG (Grant No. BR 4194/12-1) and by the Federal Ministry of Education and Research, BMBF (Grant No. 13N16555).
DOI: 10.6084/m9.figshare.12408179
title: Ellipse areas and distances

description: Numerical values for Fig 7 and 12
DOI: 10.6084/m9.figshare.7164899.v1
title: Additional file 2: of Adjacent segment degeneration or disease after cervical total disc replacement: a meta-analysis of randomized controlled trials

description: File S1. Original data of 11 included articles. (ZIP 12 mb)
DOI: 10.6084/m9.figshare.17126152
title: Additional file 1 of 4D Structural root architecture modeling from digital twins by X-Ray Computed Tomography

description: Additional file 1. Dataset.
DOI: 10.6084/m9.figshare.15029821
title: Identification of an epithelial-mesenchymal transition related long non-coding RNA (LncRNA) signature in Glioma

description: Epithelial–mesenchymal transition (EMT)-related long non-coding RNAs (lncRNAs) may be exploited as potential therapeutic targets in gliomas. However, the prognostic value of EMT-related lncRNAs in gliomas is unclear. We obtained lncRNAs from The Cancer Genome Atlas and constructed EMT-related lncRNA co-expression networks to identify EMT-related lncRNAs. The Chinese Glioma Genome Atlas (CGGA) was used for validation. Gene set enrichment and principal component analyses were used for functional annotation. The EMT–lncRNA co-expression networks were constructed. A real-time quantitative polymerase chain reaction assay was performed to validate the bioinformatics results. A nine-EMT-related lncRNAs (HAR1A, LINC00641, LINC00900, MIR210HG, MIR22HG, PVT1, SLC25A21-AS1, SNAI3-AS1, and SNHG18) signature was identified in patients with glioma. Patients in the low-risk group had a longer overall survival (OS) than those in the high-risk group (P &lt; 0.0001). Additionally, patients in the high-risk group showed no deletion of chromosomal arms 1p and/or 19q, isocitrate dehydrogenase wild type, and higher World Health Organization grade. Moreover, the signature was identified as an independent factor and was significantly associated with OS (P = 0.041, hazard ratio = 1.806). These findings were further validated using the CGGA dataset. The low- and high-risk groups showed different EMT statuses based on principal component analysis. To study the regulatory function of lncRNAs, a lncRNA-mediated ceRNA network was constructed, which showed that complex interactions of lncRNA–miRNA–mRNA may be a potential cause of EMT progression in gliomas. This study showed that the nine-EMT-related lncRNA signature has a prognostic value in gliomas.
DOI: 10.6084/m9.figshare.7164944
title: Additional file 1: of Circular RNA BCRC-3 suppresses bladder cancer proliferation through miR-182-5p/p27 axis

description: Table S1. Clinicopathological features of 47Â BC patients and the expression of BCRC-3 and miR-182-5p. Table S2 Detailed information of primers and RNA sequences used in this study. (ZIP 22 kb)