cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1438848
title: Amber Lipid17 Simulations Of Popc/Pops Membranes With Cacl2

description: <strong>System: </strong>Simulations of POPC/POPS (5:1, 144 lipids in total) membranes with  various CaCl2 concentrations. 

<strong>Number of POPS:</strong> 24.

<strong>Number of POPC</strong> 120.

<strong>Number of waters:</strong> 5760 (excluded from uploaded trajectories)

<strong>Number of Ca+2 Ions: </strong>52 (500mm), 104 (1000mm), 208 (2000mm), 311 (3000mm), 415 (4000mm)

<strong>Lipid model:</strong> Amber Lipid 17 [IR Gould, AA Skjevik, CJ Dickson, BD Madej, RC Walker: "Lipid17: A Comprehensive AMBER Force Field for the Simulation of Zwitterionic and Anionic Lipids" in prep. (2018)].

<strong>Ion models: </strong> Li/Merz Ions [Li, P. <em>J. Chem. Theory Comput.</em> <strong>9</strong> 2733-2748 (2013)].

<strong>Water model:</strong> TIP3P [WL Jorgensen, J Chandrasekhar, JD Madura, RW Impey, ML Klein <em>J. Chem. Phys.</em> <strong>79</strong> 926 (1983)].

<strong>Simulation engine:</strong> Amber16 [DA Case et al. <em>AMBER 2017</em> UCSF (2017)].

<strong>Number of independent repeats per setup: </strong>2.<br>
<strong>Trajectory lengths per repeat:</strong> 200 ns.<br>
<strong>Previously equilibrated for:</strong> 300 ns.<br>
<strong>Sampling rate:</strong> every 10 ps.

<strong>Time integration step:</strong> 2 fs.

<strong>Thermodynamic ensemble:</strong> NpT. <br>
<strong>Temperature coupling:</strong> 'Langevin' at T = 298 K.<br>
<strong>Pressure coupling: '</strong>Berendsen' [<em>J. Chem. Phys.</em> <strong>81</strong> 3684 (1984); <em>J. Chem. Phys.</em> <strong>103</strong> 10252 (1995)] with xy and z coupled separately at p = 1.0 bar with no surface tension.

<strong>Electrostatics: </strong>PME [<em>J. Chem. Phys.</em> <strong>98</strong> 10089 (1993);<em> J. Chem. Theory Comput.</em> <strong>9</strong> 3878 (2013)].<br>
<strong>Van der Waals:</strong> Turned off between 1.0 nm and 1.5 nm.

<strong>Constraints: </strong>Lengths of covalent bonds involving Hydrogens in lipids using SHAKE [<em>J. Comput. Phys.</em> <strong>23</strong> 327 (1977)], in water using SETTLE [<em>J. Comput. Chem. </em><strong>13</strong> 952 (1992)].

<strong>Used in publications: </strong>OHS Ollila et al. "NMRlipids IV: Headgroup & glycerol backbone structures, and cation binding in bilayers with PS lipids" in prep (2018).
description: B.K acknowledges financial support from International Max Planck Research School on Multiscale Bio-Systems
DOI: 10.5061/dryad.pb62bk0/1
title: GNU Octave/MATLAB model implementation

description: This file can be used to compute model runs as in Figure 2 from the publication.
DOI: 10.7487/2018.271.1.1145
title: Jake Bedford

description: 1960-2015 North Sea raw plankton, only MSFD taxa. Data provided by Clare Ostle
DOI: 10.7910/dvn/djeerb
title: Replication Data for: Nowhere to Go Why do Some Civil Wars Generate More Refugees than Others?
DOI: 10.7910/dvn/djeerb/7seji3
title: replication_data.tab
DOI: 10.7910/dvn/djeerb/abgan6
title: replication models do-file.do
DOI: 10.7910/dvn/djeerb/ak36su
title: replication for figures.R
DOI: 10.7910/dvn/djeerb/lm6eel
title: moore and shellman replication - Figure A2.R
DOI: 10.7910/dvn/djeerb/prqj2i
title: moore and shellman replication -Table A7.do
DOI: 10.7910/dvn/djeerb/rvoljk
title: moore_toreplicate.tab
DOI: 10.17632/c3vd8d376h.1
title: Data for: Voting and satisfaction with democracy in flexible-list PR

description: The analysis are based on these three datasets. We also include the do-file. In case the paper is accepted, we'll clean the do-file to make sure it's easy to replicate the analysis as an outside researcher.
DOI: 10.5281/zenodo.1438378
title: Rera Tangsa Wordlist_2

description: This Rera wordlist contains 400 words. The recordings were collected from a native speaker Sahtum Ronrang.
description: I would like to thank Dr. Stephen Morey for funding this project. Also, I am very much thankful to Sahtum Ronrang for her time in collecting the word list.
DOI: 10.5281/zenodo.1438379
title: Rera Tangsa Wordlist_2

description: This Rera wordlist contains 400 words. The recordings were collected from a native speaker Sahtum Ronrang.
description: I would like to thank Dr. Stephen Morey for funding this project. Also, I am very much thankful to Sahtum Ronrang for her time in collecting the word list.
DOI: 10.7910/dvn/8ttxz7/zavssl
title: README.md
DOI: 10.5281/zenodo.1438358
title: Dataset Comparison of MRI-based automated segmentation methods and functional neurosurgery targeting with direct visualization of the Ventro-intermediate thalamic nucleus at 7T

description: Scientific Reports - Nature - DOI : 10.1038/s41598-018-37825-8

##################################<br>
"Comparison of MRI-based automated segmentation methods and functional neurosurgery targeting with direct visualization of the Ventro-intermediate thalamic nucleus at 7T"<br>
##################################

E. Najdenovska*, C. Tuleasca*, J. Jorge, P. Maeder, J.P. Marques, T. Roine,  D. Gallichan, J.-P. Thiran, M. Levivier, and M. Bach Cuadra

*Equally contributed authors

<br>
Copyright (c) - All rights reserved. University of Lausanne. 2018.

<br>
To reproduce the analyses presented in the referred study, in this repository you could find the MR images acquired from nine young healthy subjects (YS1-YS5), four elderly healthy subject (ES1-ES4) and two drug-resistant tremor patients treated treated with Vim radiosurgery by Gamma Knife (P1 and P2).

The provided dataset includes the following NifTI files:

- MPRRAGE @3T<br>
- DWI @3T (together with the corresponding bvals and bvecs)<br>
- MP2RAGE @7T<br>
- SWI @7T<br>
- binary masks of the manual delineation of both left and right Vim respectively that were done on the SWI (as NifTI files as well).

Additionally, for the young cohort (YS1-YS5) we include as well the images used for building the quadrilateral of Guiot:<br>
- T2-w @3T<br>
- T2 CISS @3T

For the patients (P1 and P2), a follow-up MPRAGE (acquired at 3T) with Gadolinium enhancement is also provided.

——————————————<br>
Notes:<br>
1. For YS3 MP2RAGE at 7T is missing, instead MPRAGE at 3T was used

2. The code performing the thalamic nuclei clustering could be found in Zenodo (DOI: 10.5281/zenodo.123768)
DOI: 10.5281/zenodo.1438478
title: Architecture Of Pol Ii(G) And Molecular Mechanism Of Transcription Regulation By Gdown1

description: This repository contains the modeling files and the analysis related to the article "Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1" by Jishage et al. in Nat Struct Mol Biol 2018.

<strong>For more information</strong> about how to reproduce this modeling, see the Sali lab website or the README file.
DOI: 10.5281/zenodo.1438479
title: Architecture Of Pol Ii(G) And Molecular Mechanism Of Transcription Regulation By Gdown1

description: This repository contains the modeling files and the analysis related to the article "Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1" by Jishage et al. in Nat Struct Mol Biol 2018.

<strong>For more information</strong> about how to reproduce this modeling, see the Sali lab website or the README file.
DOI: 10.5281/zenodo.1438468
title: Difficult Fastq Files

description: These FASTQ files cause problems for salmontools.
DOI: 10.5281/zenodo.1438469
title: Difficult Fastq Files

description: These FASTQ files cause problems for salmontools.
DOI: 10.17632/wpkb3syx8t.1
title: Data for: Subacute clinical features after arthroscopy surgical reconstruction of complete anterior cruciate ligament rupture: A case-control study

description: Data
DOI: 10.5281/zenodo.1437803
title: Qpcr Cytokines Upon Treatment

description: Raw data (Ct values) of qPCR performed on zebrafish rag1+/+ (wt) and rag1-/- (mutant) intestines dissected 6 hours after i.p. injection with PBS, Vibrio anguillarum or Anisakis simplex extract.
DOI: 10.5281/zenodo.1437804
title: Qpcr Cytokines Upon Treatment

description: Raw data (Ct values) of qPCR performed on zebrafish rag1+/+ (wt) and rag1-/- (mutant) intestines dissected 6 hours after i.p. injection with PBS, Vibrio anguillarum or Anisakis simplex extract.
DOI: 10.5281/zenodo.1438364
title: BIONICS preliminary data_V1

description: In the uploaded PDF preliminary data concerning the synthesis and the morphological, physicochemical and biological characterization of biomimetic lipid nanocapsules are provided.
DOI: 10.5281/zenodo.1438365
title: BIONICS preliminary data_V1

description: In the uploaded PDF preliminary data concerning the synthesis and the morphological, physicochemical and biological characterization of biomimetic lipid nanocapsules are provided.
DOI: 10.17632/79b9k5wc59.1
title: Data for: Revisiting Global Economic Activity and Crude Oil Prices: a Wavelet Analysis

description: This zip file includes data sets of two commonly-used crude oil prices and an indicator for global economic activities, as well as some other confounding factors. We employ the dataset to investigate the time- and frequency-varying relationship between crude oil prices and global economic activity. A PDF file documenting the software output results of our analyses is also included.
DOI: 10.17632/t4rp7sf49s.1
title: Data for: Inflation in Africa, 1960-2015

description: The data are in word format. Annual inflation rates for African countries
DOI: 10.5061/dryad.3gk6pr4/1
title: Species cover by aspect and summit at 1m2 plot scale

description: Plant species cover (%) by aspect (N, S, E and W) and summit (1-ALZ, 2-HUA, 3-SIN, 4-ISA) at 1m2 plot scale (mean of four plots by aspect). Total of 16 plot by summit. For base line (2006-08), re-survey 1 (2012) and resurvey 2 (2017), following GLORIA protocol, in Cumbres Calchaquies, Tucuman, Argentina.
DOI: 10.5281/zenodo.1438476
title: Earthquake Nucleation Size: Evidence Of Loading Rate Dependence In Laboratory Faults

description: The data presented here is complementary to the manuscript 'Earthquake Nucleation Size: Evidence of Loading Rate Dependence in Laboratory Faults'.

It comprises selected movies of rupture propagation at different loading rates as well as strain gages time signals filtered at 500 kHz and 30 kHz.

Useful information about the processed data can be found in excel spreadsheets and text files given in the folders. Some python scripts are also available to plot the data.
DOI: 10.5281/zenodo.1438477
title: Earthquake Nucleation Size: Evidence Of Loading Rate Dependence In Laboratory Faults

description: The data presented here is complementary to the manuscript 'Earthquake Nucleation Size: Evidence of Loading Rate Dependence in Laboratory Faults'.

It comprises selected movies of rupture propagation at different loading rates as well as strain gages time signals filtered at 500 kHz and 30 kHz.

Useful information about the processed data can be found in excel spreadsheets and text files given in the folders. Some python scripts are also available to plot the data.
DOI: 10.21227/2ktd-y454
title: Numerical optimization of adhesive mounted MEMS pressure sensors

description: Our research addresses time-dependent hysteresis effects in adhesive packaged MEMS pressure sensors.Typically calibrated inside a certain temperature and pressure range, they provide precise pressure measurements, giventhat certain setting times after temperature changes are maintained. Signal errors arise when temperature changesinduce time-dependent viscoelastic relaxation in the adhesive which cannot be compensated by calibration. High precisionapplications which demand absolute signal accuracies below 30Pa on chips well below 1mm scales, while the requirementof factory calibration before soldering demands highly temperature stable adhesives. An experimentally verified, finiteelement-based simulation model is used to investigate static and hysteretic stresses in the sensor, demonstrating alarge potential for the reduction of temperature-dependent stresses affecting signal, including hysteretic stresses. This isachieved by determination of adhesive geometries that allow stress compensation, balancing opposing adverse stressesto cancel out. Using this approach, it is demonstrated that the signal hysteresis can be significantly reduced, whilemaintaining critical characteristics such as sensitivity and size.
DOI: 10.5281/zenodo.1439473
title: Dwd European Weather

description: opendata.dwd.de - OpenData by Deutscher Wetter Dienst

Conditions: https://www.dwd.de/EN/service/copyright/copyright_node.html

dates and times are UTC.
DOI: 10.5523/bris.qpqzeqc3q53m2dwczp69q3pv0
title: GainLossDataRelease

description: GainLoss tasks data from the DARet1 Study.
This study aimed to investigate what roles dopamine plays in the retrieval of different types of memory. Healthy older participants learned several memory tasks on one day, and then came back in the next day to be tested on them. On day 2 they received either a placebo or a drug (Levodopa, a dopamine precursor) and were tested 1 hour later. Participants completed both conditions (drug and placebo) in a randomised order, fully double-blinded.
DOI: 10.25919/5bae3e143e69c
title: Parkes observations for project P958 semester 2018APRS_BPSR_12

description: A major breakthrough in fast radio burst (FRB) astronomy was recently made when the repeating FRB 121102 was localized to sub-arcsecond precision. The bursts were found to originate in a bright radio nebula (hypothesized to be a young supernova remnant or pulsar wind nebulae) in a distant dwarf galaxy. These dwarf galaxies are also preferential hosts to superluminous supernova and long gamma-ray bursts, and it has been therefore suggested that the source of the repeating FRB could be a young highly magnetised neutron star. While an understanding of the repeating FRB is emerging, it is still unclear what relationship it has to the rest of the population.   Over the next six months, searches with the Australian Square Kilometre Array Pathfinder (ASKAP) are poised to detect at least 20 additional FRBs, some that will be localized to a few arcseconds.   Here we propose to search this population for repeats.  Our comprehensive sample and a dense monitoring campaign of well localised bursts, at a fluence limit more than 60 times lower than that of their detections, will either confirm the presence of additional repeating FRBs or the uniqueness of FRB 121102 amongst the population.
DOI: 10.5281/zenodo.1439083
title: Dwd European Weather

description: opendata.dwd.de - OpenData by Deutscher Wetter Dienst

Conditions: https://www.dwd.de/EN/service/copyright/copyright_node.html

dates and times are UTC.
DOI: 10.25919/5bb17463284aa
title: Flood inundation extent and duration for the Fitzroy catchment in Western Australia

description: This dataset provides flood inundation extent and duration for the Fitzroy catchment in Western Australia for the flood events of 2001, 2002, 2006, 2007, 2009, 2011 and 2014. The data are in raster format. The values in the raster file shows the duration of inundation (days) during an event. The following are the start and end time for each flood.

FLOOD YEAR	START DATE		END DATE	DURATION (DAYS)	EXCEEDANCE PROBABILITY (YEARS)
2001	16/02/2001		14/03/2001	27	1 in 16
2002	20/02/2002		7/03/2002	16	1 in 25
2006	16/03/2006		23/03/2006	8	1 in 2
2007	29/03/2007		6/04/2007	9	1 in 3
2009	26/01/2009		14/02/2009	20	1 in 5
2011	25/02/2011		31/03/2011	35	1 in 25
2014	1/02/2014		18/02/2014	18	1 in 3
DOI: 10.25919/5bb17504035b1
title: Parkes observations for project P892 semester 2018APRS_BPSR_54

description: SUPERBx looks at the highest Galactic latitudes in a search for pulsars and fast radio bursts (FRBs). We use optimised GPU codes and supercomputing to search for these, making discoveries in real time. Handling our data as it comes in is essential for the SKA Phase I era so this work applies directly to the high-data rates of next generation telescopes. Our pulsar discoveries are typically nearby scintillating sources, intermittent sources and those in interesting binary systems. Our FRB discoveries have discovery lags of ~1 second, rather than months/years and these feed rapid alerts to the world-wide follow-up community via a dedicated VOEvent format an Astronomer's Telegrams. The goal of this is to allow localisation of the discovered FRBs. This is key for identifying FRB host galaxies, so as to solve the mystery of their progenitors and to exploit their many uses as tools for precision cosmology measurements.
DOI: 10.15785/sbgrid/557
title: X-Ray Diffraction data from Protein, source of 6CDS structure

description: Native datasets
description: Two datasets (1st dataset 360 frames and the second one is 153) need to be merged for processing.
Beam centre="1507 1496". AutoProc used for data processing. Space group is P 1 21 1
DOI: 10.18119/n9js3t
title: Fig. 2 HPV-human Protein Network Map
DOI: 10.5281/zenodo.1439100
title: Ontology-Based Data Access Using Ontop

description: This data set includes example software artifacts and a guide on how to materialize the data architecture for the use of Ontop in Ontology-Based Data Access (OBDA).
DOI: 10.5281/zenodo.1439101
title: Ontology-Based Data Access Using Ontop

description: This data set includes example software artifacts and a guide on how to materialize the data architecture for the use of Ontop in Ontology-Based Data Access (OBDA).
DOI: 10.18119/n9988c
title: Figure 6.
DOI: 10.18119/n9f30v
title: Figure 5.
DOI: 10.25919/5bb17d0273885
title: Parkes observations for project P892 semester 2018APRS_BPSR_53

description: SUPERBx looks at the highest Galactic latitudes in a search for pulsars and fast radio bursts (FRBs). We use optimised GPU codes and supercomputing to search for these, making discoveries in real time. Handling our data as it comes in is essential for the SKA Phase I era so this work applies directly to the high-data rates of next generation telescopes. Our pulsar discoveries are typically nearby scintillating sources, intermittent sources and those in interesting binary systems. Our FRB discoveries have discovery lags of ~1 second, rather than months/years and these feed rapid alerts to the world-wide follow-up community via a dedicated VOEvent format an Astronomer's Telegrams. The goal of this is to allow localisation of the discovered FRBs. This is key for identifying FRB host galaxies, so as to solve the mystery of their progenitors and to exploit their many uses as tools for precision cosmology measurements.
DOI: 10.5281/zenodo.1438546
title: Amip Simulations Of Icam5 And Speedy-Ier

description: This repository contains AMIP simulations of isotope-enabled models iCAM5 (1971-2005) and SPEEDY-IER (1966-2000) for the JGR-Atmosphere paper "Impact of convective activity on precipitation \(\delta^{18}O\) in isotope-enabled general circulation models". These simulations are forced by the modern sea surface temperature and sea ice following the AMIP protocol. The file "attmAG1_1966-2000.nc" has all outputs from SPEEDY-IER. Other files are iCAM5 outputs, which include convective (PRECC) /large-scale precipitation (PRECL), precipitation isotopes (PRECT_H216O, PRECT_H218O), water vapor isotopes (H216OV, H218OV, HDOV).
DOI: 10.5281/zenodo.1438547
title: Amip Simulations Of Icam5 And Speedy-Ier

description: This repository contains AMIP simulations of isotope-enabled models iCAM5 (1971-2005) and SPEEDY-IER (1966-2000) for the JGR-Atmosphere paper "Impact of convective activity on precipitation \(\delta^{18}O\) in isotope-enabled general circulation models". These simulations are forced by the modern sea surface temperature and sea ice following the AMIP protocol. The file "attmAG1_1966-2000.nc" has all outputs from SPEEDY-IER. Other files are iCAM5 outputs, which include convective (PRECC) /large-scale precipitation (PRECL), precipitation isotopes (PRECT_H216O, PRECT_H218O), water vapor isotopes (H216OV, H218OV, HDOV).
DOI: 10.17037/data.00000821
title: IDEAS project - Professional advice network study in Ethiopia

description: The IDEAS project sought to improve the health and survival of mothers and babies through generating evidence to inform policy and practice.

This collection contains quantitative data, collection tools and documentation associated with a social network analysis study of the professional advice networks used by health care workers in Ethiopia. The cross-sectional, mixed-methods observational network study compared professional advice networks of 160 healthcare workers in 8 primary health care units (PHCUs) across four regions of Ethiopia; Amhara, Oromia, SNNP and Tigray. PHCUs include a health centre and typically 5 satellite health posts. 

Data captured included health care worker advice seeking and giving for the provision of four areas along the continuum of maternal and newborn care: antenatal care, childbirth care, postnatal care and newborn care. Additional information captured regarded professional advice exchange beyond the roster of health care workers in the PHCU. Network metrics were qualitatively compared to continuum of care coverage data as a secondary analysis. Twenty semi-structured qualitative interviews of purposively selected subjects followed the collection of quantitative network data to interpret and explain network roles and patterns observed.
DOI: 10.17861/490f2eff-e1a8-45d0-846d-3444b42af3f1
title: Data supporting: State-recycling and time-resolved imaging in topological photonic lattices

description: Raw experimental data
DOI: 10.25919/5bae4d8d48162
title: Parkes observations for project P958 semester 2018APRS_BPSR_13

description: A major breakthrough in fast radio burst (FRB) astronomy was recently made when the repeating FRB 121102 was localized to sub-arcsecond precision. The bursts were found to originate in a bright radio nebula (hypothesized to be a young supernova remnant or pulsar wind nebulae) in a distant dwarf galaxy. These dwarf galaxies are also preferential hosts to superluminous supernova and long gamma-ray bursts, and it has been therefore suggested that the source of the repeating FRB could be a young highly magnetised neutron star. While an understanding of the repeating FRB is emerging, it is still unclear what relationship it has to the rest of the population.   Over the next six months, searches with the Australian Square Kilometre Array Pathfinder (ASKAP) are poised to detect at least 20 additional FRBs, some that will be localized to a few arcseconds.   Here we propose to search this population for repeats.  Our comprehensive sample and a dense monitoring campaign of well localised bursts, at a fluence limit more than 60 times lower than that of their detections, will either confirm the presence of additional repeating FRBs or the uniqueness of FRB 121102 amongst the population.
DOI: 10.17632/ty933hstnn.1
title: Data for: Children’s fairness in two Chinese Schools: A combined ethnographic and experimental study

description: Data files and R code for "Children’s fairness in two Chinese Schools: A combined ethnographic and experimental study" by Anni Kajanus,*, Katherine McAuliffe, Felix Warneken, Peter R. Blake