cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7961555.v1
title: Additional file 8: of Computational enhancer prediction: evaluation and improvements

description: Table S5. Data for pCRMeval for 29 training sets with varying offsets on a semi-continuous scale. Values for training set sensitivity, REDfly recovery, REDfly recall, expression pattern precision and expression pattern recall with starting position offsets of 0, 5, 15, 40, 80 and 125 base pairs are reported. (XLSX 2034 kb)
DOI: 10.6084/m9.figshare.7961540
title: Additional file 6: of Computational enhancer prediction: evaluation and improvements

description: Table S4. Data for pCRMeval for 29 training sets with varying offsets at a fixed cutoff. Values for training set sensitivity, REDfly recovery, REDfly recall, expression pattern precision and expression pattern recall with starting position offsets of 0, 5, 15, 40, 80 and 125 base pairs are reported. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.7961540.v1
title: Additional file 6: of Computational enhancer prediction: evaluation and improvements

description: Table S4. Data for pCRMeval for 29 training sets with varying offsets at a fixed cutoff. Values for training set sensitivity, REDfly recovery, REDfly recall, expression pattern precision and expression pattern recall with starting position offsets of 0, 5, 15, 40, 80 and 125 base pairs are reported. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.7961522
title: Additional file 4: of Computational enhancer prediction: evaluation and improvements

description: Table S3. Data for pCRMeval for 29 training sets on a semi-continuous scale. Values for training set sensitivity, REDfly recovery, REDfly recall, expression pattern precision and expression pattern recall are reported. (XLSX 276 kb)
DOI: 10.6084/m9.figshare.7961522.v1
title: Additional file 4: of Computational enhancer prediction: evaluation and improvements

description: Table S3. Data for pCRMeval for 29 training sets on a semi-continuous scale. Values for training set sensitivity, REDfly recovery, REDfly recall, expression pattern precision and expression pattern recall are reported. (XLSX 276 kb)
DOI: 10.6084/m9.figshare.7961504
title: Additional file 2: of Computational enhancer prediction: evaluation and improvements

description: Table S2. Data for pCRMeval for 29 training sets at a fixed cutoff. Values for training set sensitivity, REDfly recovery, REDfly recall, expression pattern precision and expression pattern recall are reported. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7961504.v1
title: Additional file 2: of Computational enhancer prediction: evaluation and improvements

description: Table S2. Data for pCRMeval for 29 training sets at a fixed cutoff. Values for training set sensitivity, REDfly recovery, REDfly recall, expression pattern precision and expression pattern recall are reported. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7961498
title: Additional file 1: of Computational enhancer prediction: evaluation and improvements

description: Table S1. Sizes of expression-pattern annotated CRM groups in REDfly. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7961498.v1
title: Additional file 1: of Computational enhancer prediction: evaluation and improvements

description: Table S1. Sizes of expression-pattern annotated CRM groups in REDfly. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.12877723.v9
title: Additional file of RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization

description: Additional file of RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization
DOI: 10.6084/m9.figshare.12877702
title: Additional file 3 of RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization

description: Additional file 3:Variance of gene expression across different tissue types. Standard deviation of the top 50 probe sets that were most stable across all conditions (5014 samples from the AffymetrixHuman133 2.0 platform) across 186 different tissue categories. (XLS 224 KB)
DOI: 10.6084/m9.figshare.12877702.v1
title: Additional file 3 of RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization

description: Additional file 3:Variance of gene expression across different tissue types. Standard deviation of the top 50 probe sets that were most stable across all conditions (5014 samples from the AffymetrixHuman133 2.0 platform) across 186 different tissue categories. (XLS 224 KB)
DOI: 10.6084/m9.figshare.12877708
title: Additional file 5 of RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization

description: Additional file 5:Ranks of the SD of commonly used reference genes across different mouse tissues. Ranks of the SD across different tissues of probe sets representing commonly used reference genes in mouse (AffymetrixMouse430 2.0 platform). (XLS 26 KB)
DOI: 10.6084/m9.figshare.12877714
title: Additional file 7 of RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization

description: Additional file 7:Original measurement data of RT-qPCR validation experiments. For each validation experiment, the original Cq values for each sample are provided. (XLS 59 KB)
DOI: 10.6084/m9.figshare.12877714.v1
title: Additional file 7 of RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization

description: Additional file 7:Original measurement data of RT-qPCR validation experiments. For each validation experiment, the original Cq values for each sample are provided. (XLS 59 KB)
DOI: 10.6084/m9.figshare.12877708.v1
title: Additional file 5 of RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization

description: Additional file 5:Ranks of the SD of commonly used reference genes across different mouse tissues. Ranks of the SD across different tissues of probe sets representing commonly used reference genes in mouse (AffymetrixMouse430 2.0 platform). (XLS 26 KB)
DOI: 10.6084/m9.figshare.12877723.v11
title: Additional file of RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization

description: Additional file of RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization
DOI: 10.6084/m9.figshare.12877723.v13
title: Additional file of RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization

description: Additional file of RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization
DOI: 10.5281/zenodo.4004037
title: Supplementary Materials_(Article) Identification of the regional and economic contexts of sustainable urban logistics policies

description: Supplementary materials to the article topics - Identification of the regional and economic contexts of sustainable urban logistics policies
DOI: 10.6084/m9.figshare.12877729
title: Additional file 1 of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file 1:Table S1 List of insect specific proteins (excel file). (XLS 22 KB)
DOI: 10.6084/m9.figshare.12877732.v1
title: Additional file 2 of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file 2:Table S2 Functional characteristics of insect specific proteins (excel file). (XLS 35 KB)
DOI: 10.6084/m9.figshare.12877744.v1
title: Additional file 6 of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file 6:Table S6 List of candidate taxonomically restricted genes involved in eusocial evolution (excel file). (XLS 43 KB)
DOI: 10.6084/m9.figshare.12877741
title: Additional file 5 of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file 5:Table S5 Name and classification of genes expressed in the Hypopharyngeal gland (excel file). (XLS 32 KB)
DOI: 10.6084/m9.figshare.12877741.v1
title: Additional file 5 of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file 5:Table S5 Name and classification of genes expressed in the Hypopharyngeal gland (excel file). (XLS 32 KB)
DOI: 10.6084/m9.figshare.12877756.v2
title: Additional file of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee
DOI: 10.5281/zenodo.4004036
title: Supplementary Materials_(Article) Identification of the regional and economic contexts of sustainable urban logistics policies

description: Supplementary materials to the article topics - Identification of the regional and economic contexts of sustainable urban logistics policies
DOI: 10.6084/m9.figshare.12877729.v1
title: Additional file 1 of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file 1:Table S1 List of insect specific proteins (excel file). (XLS 22 KB)
DOI: 10.6084/m9.figshare.12877747
title: Additional file 7 of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file 7:Table S7 List of manual EST alignments to gene predictions (excel file). (XLS 92 KB)
DOI: 10.6084/m9.figshare.12877756.v5
title: Additional file of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee
DOI: 10.6084/m9.figshare.12877732
title: Additional file 2 of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file 2:Table S2 Functional characteristics of insect specific proteins (excel file). (XLS 35 KB)
DOI: 10.6084/m9.figshare.12877735
title: Additional file 3 of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file 3:Table S3 Taxonomically restricted genes with paralogs (parent genes) that show wide conservation (excel file). (XLS 32 KB)
DOI: 10.6084/m9.figshare.12877744
title: Additional file 6 of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file 6:Table S6 List of candidate taxonomically restricted genes involved in eusocial evolution (excel file). (XLS 43 KB)
DOI: 10.6084/m9.figshare.12877735.v1
title: Additional file 3 of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file 3:Table S3 Taxonomically restricted genes with paralogs (parent genes) that show wide conservation (excel file). (XLS 32 KB)
DOI: 10.6084/m9.figshare.12877756.v4
title: Additional file of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee
DOI: 10.6084/m9.figshare.12877747.v1
title: Additional file 7 of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file 7:Table S7 List of manual EST alignments to gene predictions (excel file). (XLS 92 KB)
DOI: 10.6084/m9.figshare.12877756.v8
title: Additional file of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee
DOI: 10.6084/m9.figshare.12877756.v3
title: Additional file of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee
DOI: 10.6084/m9.figshare.12877756.v7
title: Additional file of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee
DOI: 10.6084/m9.figshare.12877738.v1
title: Additional file 4 of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file 4:Table S4 Table showing the results from an analysis of the relationship between homology status and pattern of gene expression with different cut-off p-values for significance. (XLS 26 KB)
DOI: 10.6084/m9.figshare.12877756.v6
title: Additional file of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee
DOI: 10.6084/m9.figshare.12877738
title: Additional file 4 of Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

description: Additional file 4:Table S4 Table showing the results from an analysis of the relationship between homology status and pattern of gene expression with different cut-off p-values for significance. (XLS 26 KB)
DOI: 10.6084/m9.figshare.7961375
title: Additional file 6: of Incremental cost and health gains of the 2016 WHO antenatal care recommendations for Rwanda: results from expert elicitation

description: Calculation of discounted Life Years Saved.Â (XLSX 33 kb)
DOI: 10.6084/m9.figshare.12877759
title: Additional file 1 of Rhythms and synchronization patterns in gene expression in the Aedes aegypti mosquito

description: Additional file 1: Supplementary Information. This is a zip archive file that contains Supplemental Table 1 (MS Excel file), Supplemental Table 2 (MS Excel file) and Supplemental Figure 1 (Adobe PDF file). Supplemental Table 1 reports the experiment design for sample collection with date, time, pooling and replication information. Supplemental Table 2 reports the results of straight application of periodicity tests to reconstructed 48 h expression profiles (see Methods). Supplemental Figure 1 illustrates the process of generation of circadian expression heat map (presented in Figure 1). (ZIP 7 MB)
DOI: 10.6084/m9.figshare.12877759.v1
title: Additional file 1 of Rhythms and synchronization patterns in gene expression in the Aedes aegypti mosquito

description: Additional file 1: Supplementary Information. This is a zip archive file that contains Supplemental Table 1 (MS Excel file), Supplemental Table 2 (MS Excel file) and Supplemental Figure 1 (Adobe PDF file). Supplemental Table 1 reports the experiment design for sample collection with date, time, pooling and replication information. Supplemental Table 2 reports the results of straight application of periodicity tests to reconstructed 48 h expression profiles (see Methods). Supplemental Figure 1 illustrates the process of generation of circadian expression heat map (presented in Figure 1). (ZIP 7 MB)
DOI: 10.6084/m9.figshare.7961375.v1
title: Additional file 6: of Incremental cost and health gains of the 2016 WHO antenatal care recommendations for Rwanda: results from expert elicitation

description: Calculation of discounted Life Years Saved.Â (XLSX 33 kb)
DOI: 10.6084/m9.figshare.7961366
title: Additional file 5: of Incremental cost and health gains of the 2016 WHO antenatal care recommendations for Rwanda: results from expert elicitation

description: Calculation of incremental cost.Â (XLSX 34 kb)
DOI: 10.6084/m9.figshare.7961366.v1
title: Additional file 5: of Incremental cost and health gains of the 2016 WHO antenatal care recommendations for Rwanda: results from expert elicitation

description: Calculation of incremental cost.Â (XLSX 34 kb)
DOI: 10.6084/m9.figshare.12877786.v1
title: Additional file of Rhythms and synchronization patterns in gene expression in the Aedes aegypti mosquito

description: Additional file of Rhythms and synchronization patterns in gene expression in the Aedes aegypti mosquito
DOI: 10.6084/m9.figshare.7961312
title: Additional file 1: of L-lactate induces specific genome wide alterations of gene expression in cultured bovine granulosa cells

description: Table S1. List of gene-specific primers used in qPCR. Table S2. Principal component analysis of microarray dataset. Table S3. Principal component analysis of qPCR. Table S4. Differential expressed clusters of lactate vs. vehicle control -treated GC. Table S5. Affected pathways identified by IPA. Table S6. Upstream regulators identified by IPA (pâ
DOI: 10.6084/m9.figshare.7961309
title: Additional file 2: of Gaze behavior and cognitive states during fingerprint target group localization

description: Tables of Fixation Data. (XLSX 7142 kb)
DOI: 10.6084/m9.figshare.7961312.v1
title: Additional file 1: of L-lactate induces specific genome wide alterations of gene expression in cultured bovine granulosa cells

description: Table S1. List of gene-specific primers used in qPCR. Table S2. Principal component analysis of microarray dataset. Table S3. Principal component analysis of qPCR. Table S4. Differential expressed clusters of lactate vs. vehicle control -treated GC. Table S5. Affected pathways identified by IPA. Table S6. Upstream regulators identified by IPA (pâ
DOI: 10.6084/m9.figshare.7961309.v1
title: Additional file 2: of Gaze behavior and cognitive states during fingerprint target group localization

description: Tables of Fixation Data. (XLSX 7142 kb)
DOI: 10.6084/m9.figshare.7961288
title: Additional file 8: of Culture-enriched human gut microbiomes reveal core and accessory resistance genes

description: Table S4. Number of resistance genes observed per culture-independent or culture-enriched microbiomes with 70 percent identity to reference resistance genes from MERGEM. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7961291
title: Additional file 9: of Culture-enriched human gut microbiomes reveal core and accessory resistance genes

description: Table S6. Potential species origin of antibiotic resistance genes. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.7961291.v1
title: Additional file 9: of Culture-enriched human gut microbiomes reveal core and accessory resistance genes

description: Table S6. Potential species origin of antibiotic resistance genes. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.7961288.v1
title: Additional file 8: of Culture-enriched human gut microbiomes reveal core and accessory resistance genes

description: Table S4. Number of resistance genes observed per culture-independent or culture-enriched microbiomes with 70 percent identity to reference resistance genes from MERGEM. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7961279
title: Additional file 3: of The Vitamin C, Thiamine and Steroids in Sepsis (VICTAS) Protocol: a prospective, multi-center, double-blind, adaptive sample size, randomized, placebo-controlled, clinical trial

description: World Health Organization Trial Registration Data. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7961279.v1
title: Additional file 3: of The Vitamin C, Thiamine and Steroids in Sepsis (VICTAS) Protocol: a prospective, multi-center, double-blind, adaptive sample size, randomized, placebo-controlled, clinical trial

description: World Health Organization Trial Registration Data. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7961255
title: Additional file 3: of Identification of ADGRE5 as discriminating MYC target between Burkitt lymphoma and diffuse large B-cell lymphoma

description: File S3. RNA-Seq data of differentially expressed genes derived from comparison of BL vs. DLBCL, BL vs. DLBCLneg, DLBCLneg vs. DLBCLpos and BL vs. DLBCLpos. (XLSX 13003 kb)
DOI: 10.6084/m9.figshare.7961258
title: Additional file 4: of Culture-enriched human gut microbiomes reveal core and accessory resistance genes

description: Table S3. Assembled genome size per species. (XLSX 377 kb)
DOI: 10.6084/m9.figshare.7961252
title: Additional file 3: of Comparative genomics reveals a lack of evidence for pigeons as a main source of stx2f-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes

description: Fasta format of the bfpA gene sequences detected in this study. (FASTA 5 kb)
DOI: 10.6084/m9.figshare.7961258.v1
title: Additional file 4: of Culture-enriched human gut microbiomes reveal core and accessory resistance genes

description: Table S3. Assembled genome size per species. (XLSX 377 kb)
DOI: 10.6084/m9.figshare.7961246
title: Additional file 3: of Culture-enriched human gut microbiomes reveal core and accessory resistance genes

description: Table S2. Taxonomic profiling at the rank of species. (XLS 6107 kb)
DOI: 10.6084/m9.figshare.7961255.v1
title: Additional file 3: of Identification of ADGRE5 as discriminating MYC target between Burkitt lymphoma and diffuse large B-cell lymphoma

description: File S3. RNA-Seq data of differentially expressed genes derived from comparison of BL vs. DLBCL, BL vs. DLBCLneg, DLBCLneg vs. DLBCLpos and BL vs. DLBCLpos. (XLSX 13003 kb)
DOI: 10.6084/m9.figshare.7961252.v1
title: Additional file 3: of Comparative genomics reveals a lack of evidence for pigeons as a main source of stx2f-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes

description: Fasta format of the bfpA gene sequences detected in this study. (FASTA 5 kb)
DOI: 10.6084/m9.figshare.7961240
title: Additional file 2: of Identification of ADGRE5 as discriminating MYC target between Burkitt lymphoma and diffuse large B-cell lymphoma

description: File S2. ChIP-Seq data of differentially bound MYC and H3K4 target genes derived from comparison of BL vs. DLBCL, BL vs. DLBCLneg, DLBCLneg vs. DLBCLpos and BL vs. DLBCLpos. (XLSX 1673 kb)
DOI: 10.6084/m9.figshare.7961243
title: Additional file 2: of Comparative genomics reveals a lack of evidence for pigeons as a main source of stx2f-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes

description: Table S2. Absence/Presence of E. coli virulence factors in 223 stx2f-carrying strains. (XLSX 119 kb)
DOI: 10.6084/m9.figshare.7961246.v1
title: Additional file 3: of Culture-enriched human gut microbiomes reveal core and accessory resistance genes

description: Table S2. Taxonomic profiling at the rank of species. (XLS 6107 kb)
DOI: 10.6084/m9.figshare.7961237
title: Additional file 1: of Comparative genomics reveals a lack of evidence for pigeons as a main source of stx2f-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes

description: Table S1. Characteristics of all 223 stx2f-carrying strains analysed in this study; accession number, country, source, isolation year, in silico serotype, in silico ST, rpoB sequence analysis and assembly statistics. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.7961243.v1
title: Additional file 2: of Comparative genomics reveals a lack of evidence for pigeons as a main source of stx2f-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes

description: Table S2. Absence/Presence of E. coli virulence factors in 223 stx2f-carrying strains. (XLSX 119 kb)
DOI: 10.6084/m9.figshare.7961240.v1
title: Additional file 2: of Identification of ADGRE5 as discriminating MYC target between Burkitt lymphoma and diffuse large B-cell lymphoma

description: File S2. ChIP-Seq data of differentially bound MYC and H3K4 target genes derived from comparison of BL vs. DLBCL, BL vs. DLBCLneg, DLBCLneg vs. DLBCLpos and BL vs. DLBCLpos. (XLSX 1673 kb)