cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3632327_d13.v1
title: Additional file 21: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ  infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

description: Properties of predicted Fop-37622 genes/proteins. (XLSX 4021 kb)
DOI: 10.6084/m9.figshare.c.3632339_d7.v1
title: MOESM1 of Conservation and divergence of bHLH genes in the calcisponge Sycon ciliatum

description: Additional file 1. Sequences of all the identified Sycon bHLH proteins.
DOI: 10.6084/m9.figshare.c.3632327_d14.v1
title: Additional file 20: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ  infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

description: Properties of predicted Foc -38-1 genes/proteins. (XLSX 6173 kb)
DOI: 10.6084/m9.figshare.c.3633380_d1.v1
title: MOESM2 of Membrane bound modified form of clade B Env, JRCSF is suitable for immunogen design as it is efficiently cleaved and displays all the broadly neutralizing epitopes including V2 and C2 domain-dependent conformational epitopes

description: Additional file 2. Materials and methods.
DOI: 10.6084/m9.figshare.c.3633353_d3.v1
title: Additional file 1: of Systematic identification and analysis of frequent gene fusion events in metabolic pathways

description: Is an excel file containing Supplemental Tables S1-S16. (XLSX 11230 kb)
DOI: 10.6084/m9.figshare.c.3635033_d2.v1
title: Additional file 2. of lobChIP: from cells to sequencing ready ChIP libraries in a single day

description: Excel file with list of samples, read statistics and overlap between the datasets.
DOI: 10.6084/m9.figshare.c.3636041_d4.v1
title: Additional file 3: of A robust prognostic gene expression signature for early stage lung adenocarcinoma

description: TCGA LUSC clinical data. (TXT 124 kb)
DOI: 10.6084/m9.figshare.c.3636047_d2.v1
title: Additional file 17: Table S3. of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression

description: Transcription rate analysis. Transcription rates were fitted for genes in individual polycistronic transcription units that share a common transcription initiation region. The lists of genes used are in the following sheets. The top sheet also shows calculations for some other transcription units. (XLSX 43Â kb)
DOI: 10.6084/m9.figshare.c.3636047_d1.v1
title: Additional file 6: of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression

description: Script for model BS-F (R 2Â kb)
DOI: 10.6084/m9.figshare.c.3636047_d3.v1
title: Additional file 14: Table S2. of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression

description: Sheet 1: Results for coding regions present in both sheets 1 and 2 of Additional file 9: Table S1 are compared, using PC-A and BS-D for modelling. Column “BS ratio/PC ratio” is column M divided by column H and indicates possible developmental regulation of processing. Column O: “1. BS low”: mRNA amount is at least 4 times less than expected in bloodstream forms; “2. PC Low”: mRNA amount is at least 4 times less than expected in procyclic forms; 3. Both low: mRNA amount is at least 4 times less than expected in both forms; 4. Normal: remaining genes, except for “5. BS high”: mRNA amount is at least 4 times more than expected in bloodstream forms. Data for 5′-UTRs and upstream ORFs are from TritrypDB. Sheet 2: mRNAs that were at least 4 times less abundant than predicted in bloodstream forms, and more abundant than predicted procyclic forms. Sheet 3: mRNAs that were at least 4 times less abundant than predicted in both bloodstream and procyclic forms. Note that columns Q and R are not independent since each includes the mRNA abundance. Sheet 4: Statistical analyses. Sequence information was taken from from TritrypDB. (XLSX 796 kb)
DOI: 10.6084/m9.figshare.c.3636047_d6.v1
title: Additional file 2: of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression

description: Script for model BS-B (R 2Â kb)
DOI: 10.6084/m9.figshare.c.3636047_d7.v1
title: Additional file 7: of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression

description: Script for model PC-A (R 2Â kb)
DOI: 10.6084/m9.figshare.c.3636047_d8.v1
title: Additional file 4: of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression

description: Script for model BS-D (R 2Â kb)
DOI: 10.6084/m9.figshare.c.3636047_d11.v1
title: Additional file 18: Table S4. of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression

description: Ribosome profiling data. Jensen - data from [20]; Silicotryp - data from [16] and this paper. All numbers were suitably rounded after the calculations had been finished. Gene annotation is partly from tritrypDB and partly manual. Sheet 1: Raw read counts for all ORFs. RP = ribosome profiling, FR = fragmented poly(A) + RNA. BS = bloodstream, PC = procyclic. Sheet 2: Reads for the unique gene set of genes [9], used in subsequent calculations. Sheet 3: DeSeq comparison of Jensen and Silicotryp results (total ribosome profiling reads per ORF) for procyclic forms. Sheet 4: DeSeq comparison of Jensen and Silicotryp results (total ribosome profiling reads per ORF) for bloodstream forms. Sheet 5: DeSeq comparison of Jensen and Silicotryp results (total fragmented RNA reads per ORF) for procyclic forms. Sheet 6: DeSeq comparison of Jensen and Silicotryp results (total fragmented RNA reads per ORF) for bloodstream forms. Sheet 7: ORFs that showed significant differences in ribosome profiling reads between the Jensen and Silicotryp datasets. Red are higher in Silicotryp and blue are lower. Sheet 8: Reads per million calculated for the unique gene set. Sheet 9: Alignment statistics. rp = ribosome profiling; fr = fragmented poly(A) + RNA. PC- = procyclic, BS = cultured bloodstream forms. Sheet 10: Alternative normalisation using EdgeR. (XLSX 7622 kb)
DOI: 10.6084/m9.figshare.c.3636047_d9.v1
title: Additional file 5: of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression

description: Script for model BS-E (R 2Â kb)
DOI: 10.6084/m9.figshare.c.3636047_d10.v1
title: Additional file 3: of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression

description: Script for model BS-C (R 2Â kb)
DOI: 10.6084/m9.figshare.c.3636047_d15.v1
title: Additional file 8: of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression

description: Script for model PC-B (R 2Â kb)
DOI: 10.6084/m9.figshare.c.3636047_d16.v1
title: Additional file 13: of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression

description: Script for polypyrimidine tract analysis (R 2Â kb)
DOI: 10.6084/m9.figshare.28052201
title: The impact of totally laparoscopic gastrectomy and laparoscopy-assisted gastrectomy for patients with gastric carcinoma on postoperative intestinal function recovery

description: Surgery is still the most definitive way to treat gastric cancer. With the development of laparoscopic technology, the surgical approach of laparoscopic intervention is quickly accepted and widely used in surgical treatment because of its less trauma, less intraoperative bleeding, and quicker postoperative recovery; however, it also has unfavorable factors, such as the difficulty of operation and the long duration of operation, which have a certain impact on surgical results. In this study, we intend to further explore the advantages and disadvantages of the two surgical modalities by comparing TNFα, IL-1, IL-6, IL-10, COX-2 and PGE2 in serum after total laparoscopy and laparoscopy-assisted radical mastectomy for gastric cancer, as well as postoperative exhaustion time and the incidence of related complications, with the following specific protocols:Seventy patients with gastric cancer were randomly divided into two groups, and underwent total laparoscopic and laparoscopic-assisted radical gastric cancer surgery, respectively, to compare the intraoperative bleeding and operation time of the two surgical procedures, postoperative time of the first exhaustion of gas, time of bowel sound recovery, hospitalization time, and complications, and the patients were evaluated for postoperative pain assessment (VAS assessment) and short-term quality of survival assessment (SF-36 assessment). Changes in serum levels of TNFα, IL-1, IL-6, IL-10, COX-2 and PGE2 were observed in patients after the two surgical modalities, and their correlation with the postoperative time to exhaustion was analyzed.To explore the effects of total laparoscopy and laparoscopy-assisted radical gastric cancer surgery on patients' serum levels of TNFα, IL-1, IL-6, IL-10, COX-2 and PGE2 through the detection of various indexes. To clarify the effects of the two master modalities on the postoperative time to exhaustion and the incidence of related complications. To clarify whether changes in serum levels of relevant validation indexes in perioperative patients can be a marker of postoperative intestinal obstruction.
DOI: 10.6084/m9.figshare.28052201.v1
title: The impact of totally laparoscopic gastrectomy and laparoscopy-assisted gastrectomy for patients with gastric carcinoma on postoperative intestinal function recovery

description: Surgery is still the most definitive way to treat gastric cancer. With the development of laparoscopic technology, the surgical approach of laparoscopic intervention is quickly accepted and widely used in surgical treatment because of its less trauma, less intraoperative bleeding, and quicker postoperative recovery; however, it also has unfavorable factors, such as the difficulty of operation and the long duration of operation, which have a certain impact on surgical results. In this study, we intend to further explore the advantages and disadvantages of the two surgical modalities by comparing TNFα, IL-1, IL-6, IL-10, COX-2 and PGE2 in serum after total laparoscopy and laparoscopy-assisted radical mastectomy for gastric cancer, as well as postoperative exhaustion time and the incidence of related complications, with the following specific protocols:Seventy patients with gastric cancer were randomly divided into two groups, and underwent total laparoscopic and laparoscopic-assisted radical gastric cancer surgery, respectively, to compare the intraoperative bleeding and operation time of the two surgical procedures, postoperative time of the first exhaustion of gas, time of bowel sound recovery, hospitalization time, and complications, and the patients were evaluated for postoperative pain assessment (VAS assessment) and short-term quality of survival assessment (SF-36 assessment). Changes in serum levels of TNFα, IL-1, IL-6, IL-10, COX-2 and PGE2 were observed in patients after the two surgical modalities, and their correlation with the postoperative time to exhaustion was analyzed.To explore the effects of total laparoscopy and laparoscopy-assisted radical gastric cancer surgery on patients' serum levels of TNFα, IL-1, IL-6, IL-10, COX-2 and PGE2 through the detection of various indexes. To clarify the effects of the two master modalities on the postoperative time to exhaustion and the incidence of related complications. To clarify whether changes in serum levels of relevant validation indexes in perioperative patients can be a marker of postoperative intestinal obstruction.
DOI: 10.6084/m9.figshare.c.3637061_d8.v1
title: Additional file 2: of Conserved 3â ˛ UTR stem-loop structure in L1 and Alu transposons in human genome: possible role in retrotransposition

description: Coordinates of 401242 Alus used in the study. (CSV 12945Â kb)
DOI: 10.6084/m9.figshare.c.3637088_d3.v1
title: Additional file 3: of Gene changes may minimize masculinizing and defeminizing influences of exposure to male cotwins in female callitrichine primates

description: Summary of amino acid residue substitutions and predicted change in structure/function (PROVEAN, SIFT, and PolyPhen) for the six candidate genes for human, Saimiri, and four callitrichine primates. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3638243_d10.v1
title: Additional file 12: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination

description: Transcriptional and translational profiles of photosystem. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3638243_d12.v1
title: Additional file 1: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination

description: Total list of all transcripts in all the three samples mapped to Arabidopsis TAIR 10.0 genome. (XLSX 4615 kb)
DOI: 10.6084/m9.figshare.c.3638243_d13.v1
title: Additional file 13: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination

description: Transcriptional and translational profiles of CBB enzymes. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3638243_d14.v1
title: Additional file 16: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination

description: Transcriptional and translational profiles of TCA cycle enzymes. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3638243_d17.v1
title: Additional file 10: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination

description: Proteomics data of nuclear-encoded proteins. (XLSX 1353 kb)
DOI: 10.6084/m9.figshare.c.3638243_d20.v1
title: Additional file 15: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination

description: Transcriptional and translational profiles of glycolysis enzymes. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3638243_d19.v1
title: Additional file 4: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination

description: Total list of significant DEGs at (a) T1 compared with T0, (b) T8 compared with T0 and (c) T8 compared with T1. (XLSX 1863 kb)
DOI: 10.6084/m9.figshare.c.3638270_d2.v1
title: MOESM2 of ADMIRE: analysis and visualization of differential methylation in genomic regions using the Infinium HumanMethylation450 Assay

description: Additional file 2. Comparison of available tools and packages for analysis of Illumina HumanMethylation450 Assays.
DOI: 10.6084/m9.figshare.c.3638243_d21.v1
title: Additional file 3: of Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination

description: Transcriptional and translational profiles of mitochondrion-encoded genes. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3638270_d1.v1
title: MOESM7 of ADMIRE: analysis and visualization of differential methylation in genomic regions using the Infinium HumanMethylation450 Assay

description: Additional file 7. Significantly differentially methylated promoter regions in RA.
DOI: 10.6084/m9.figshare.c.3638270_d5.v1
title: MOESM4 of ADMIRE: analysis and visualization of differential methylation in genomic regions using the Infinium HumanMethylation450 Assay

description: Additional file 4. Significantly differentially methylated tiling regions in AF. Tiling regions were annotated with their nearest gene (see Methods).
DOI: 10.6084/m9.figshare.c.3638270_d6.v1
title: MOESM3 of ADMIRE: analysis and visualization of differential methylation in genomic regions using the Infinium HumanMethylation450 Assay

description: Additional file 3. ADMIRE documentation. The documentation provides description of all available parameters, input and output files as well as an example analysis of the atrial fibrillation data used in this publication.
DOI: 10.6084/m9.figshare.c.3639305_d1.v1
title: Additional file 1: Table S1. of Detection and prediction of insider threats to cyber security: a systematic literature review and meta-analysis

description: Overview of the proposed insider threat detection algorithms. (XLSX 25.6 kb)
DOI: 10.15468/dl.vjdnby
title: Occurrence Download

description: A dataset containing 744 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Aralia elata (Miq.) Seem."
 ]
}

 The dataset includes 744 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038619-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wwb2qm
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vampyressa melissa Thomas, 1926"
 ]
}

 The dataset includes 52 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179446-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s5oof1
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is CUMV Mammal Collection"
 ]
}

 The dataset includes 64 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017573-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qtkk35
title: Occurrence Download

description: A dataset containing 1040 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Taxus cuspidata Siebold & Zucc.",
 "TaxonKey is Taxus caespitosa Nakai"
 ]
 }
 ]
}

 The dataset includes 1040 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006435-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kxg0og
title: Occurrence Download

description: A dataset containing 6400 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-69.51152 44.05501,-66.30351 44.05501,-66.30351 45.34041,-69.51152 45.34041,-69.51152 44.05501))",
 "DatasetKey is NaGISA Project",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6400 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017573-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mka65
title: Occurrence Download

description: A dataset containing 1025 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vanessa virginiensis (Drury, 1773)"
 ]
}

 The dataset includes 1025 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003628-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nozn2x
title: Occurrence Download

description: A dataset containing 180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "Year 2018-2018",
 "HasCoordinate is true",
 "TaxonKey is Puma concolor (Linnaeus, 1771)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 180 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017574-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hmsx53
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alchemilla lainzii S.E.Fröhner"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0169367-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hywnbh
title: Occurrence Download

description: A dataset containing 1443 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Ceriops tagal (Perr.) C.B.Rob.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1443 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017575-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gyvaft
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Phytelephas macrocarpa Ruiz & Pav."
 ]
}

 The dataset's 3 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184484-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.stpmpt
title: Occurrence Download

description: A dataset containing 6400 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-69.51152 44.05501,-66.30351 44.05501,-66.30351 45.34041,-69.51152 45.34041,-69.51152 44.05501))",
 "DatasetKey is NaGISA Project",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6400 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017575-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n5d8qu
title: Occurrence Download

description: A dataset containing 1174 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepus alleni Mearns, 1890"
 ]
}

 The dataset includes 1174 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003631-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11315559
title: AbdanHusnan/datasetETI: DatasetKel9

description: No description provided.