cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.cd57c84/1
title: Metabolites in the shoot and root identified by LC-MS under sole nitrate, 75/25 nitrate and ammonium ratio supply, and sole ammonium supply in 12d for maize (Zhengdan 958) seedlings in hydroponic condition.

description: Metabolites in the shoot and root identified by LC-MS under sole nitrate, 75/25 nitrate and ammonium ratio supply, and sole ammonium supply in 12d for maize (Zhengdan 958) seedlings in hydroponic condition.
 Using the R (V3.3.2) XCMS package to identify peaks identification, peaks filtration,
 peaks alignment. In among, the main parameters are bw=5, ppm=15, peakwidth=c(10,120), mzwid=0.015, mzdiff=0.01, method=”centWave”.
 Obtain a data matrix including information such as“mass to charge ration, m/z”, retention time and intensity. In among, positive ion mode obtains 16068 precursor molecules and negative ion mode obtains 5259 precursor molecules for each N forms. The data was exported to excel for subsequent analysis. 
 SCK, ST1 and ST2 indicate the metabolites in the shoot of sole nitrate supply, mixed N supply and sole ammonium supply in 12d, respectively. RCK, RT1 and RT2 indicate the metabolites in the root of sole nitrate supply, mixed N supply and sole ammonium supply in 12d, respectively.
DOI: 10.5061/dryad.cd57c84/2
title: Supplementary Material

description: Supplementary tables and figures
DOI: 10.5061/dryad.fb17m59/1
title: Stable_isotope_Data

description: Perch and source stable isotope data
DOI: 10.5061/dryad.fb17m59/2
title: Diet Data

description: Perch diet data
DOI: 10.5061/dryad.fb17m59/3
title: Morphology_Perch_erken_classifiers_Data

description: Classifiers for morphological data
DOI: 10.5061/dryad.j1m1t3t/1
title: R code used in modeling

description: R code used in modeling; use in combination with attached RData object
DOI: 10.5061/dryad.j1m1t3t/2
title: lizard_data

description: RData object used in modeling; use in combination with attached R code
DOI: 10.5061/dryad.jr412dq/2
title: Goodman_etal_Chernobyl_nonrep

description: Data on non-reproducing Daphnia pulex sampled from the Chernobyl Exclusion Zone and tested under UK background radiation dose rates at the University of Stirling.
DOI: 10.5061/dryad.k79v6/1
title: R Code for statistical analyses

description: This file contains all R code necessary to carry out the statistical analyses used throughout the paper, aside from the calculation of masculinity scores, which can be found in the SPSS Code file. Brief explanations of each procedure are also provided.
DOI: 10.5061/dryad.k79v6/2
title: SPSS Code for Facial Masculinity

description: This file contains the syntax for the regression of facial features (N=8) on sex, including saving the unstandardized predicted variables, which we used as facial masculinity scores. Load the Facial Measures file in SPSS and run this code to reproduce the analysis.
DOI: 10.5061/dryad.k79v6/3
title: Facial measures

description: File containing feature measurements of all male and female faces, along with color and luminance data. Use this file to reproduce masculinity scores (in conjunction with SPSS Code) and analyses of facial masculinity by age, color, and luminance analyses (in conjunction with R Code).
DOI: 10.5061/dryad.k79v6/4
title: Experimental Trial Data

description: This file contains [female] subject metadata, stimulus [masculine and feminine male] metadata, and all trial data for all 107 experimental trials. Use in conjunction with R Code to reproduce all main analyses and the analyses of the effects of familiarity (co-group-membership) on look-time.
DOI: 10.5061/dryad.k79v6/5
title: Color Data

description: The file contains RGB values for all stimulus male faces. Use in conjunction with the equations for calculating color and luminance, which can be found in subsection Methods &gt; Potential confounds of facial masculinity
DOI: 10.5061/dryad.kc0490t/3
title: XPS properties of the Graphene quantum dots

description: The full scan XPS spectrum of the graphene quantum dots (GQDs): present three peaks at 285.09, 531.2 and 1071.17 eV, which correspond to C1s, O1s and Na1s, respectively. The C1s spectrum of GQDs demonstrated oxygen-containing functional group, it shown that citric acid occurred incomplete carbonization and formed a large amount of C=O during pyrolysis.
DOI: 10.5061/dryad.kc835.6
title: Data from: Genome sequence of M6, a diploid inbred clone of the high glycoalkaloid-producing tuber-bearing potato species Solanum chacoense, reveals residual heterozygosity.
DOI: 10.5061/dryad.kc835.6/14.6
title: Readme.txt
DOI: 10.5061/dryad.kc835.6/2.6
title: 523_3_assembly_ALLPATHS_v4.1.fasta

description: Genome assembly of S. chacoense M6, containing 8,260 scaffold sequences
DOI: 10.5061/dryad.n60t8b3/1
title: River herring eDNA and field abundance data from Plough et al
DOI: 10.5061/dryad.q9h2ds8/1
title: ToothMorph

description: ToothMorph is a zipped directory which includes all code, csv files, data matrices, and analyses used in this manuscript. Details are included in a readme file within this directory.
This code is also available on GitHub (see github.com/esibert/toothmorph), however this data package also includes saved RData workspace images and calculation output csv files, which are too large to include on GitHub.
DOI: 10.5061/dryad.q9h2ds8/2
title: DSDP-596_Ichthyolith_Images

description: Images of all ichthyoliths included in analysis for Two pulses of morphological diversification in Pacific pelagic fishes following the Cretaceous-Paleogene Mass Extinction, Sibert, Elizabeth, Friedman, Matthew, Hull, Pincelli, Hunt, Gene, Norris, Richard, Proceedings of the Royal Society B
DOI: 10.5061/dryad.s7v0bh2/1
title: table e-1

description: Variable names in the Nationwide Inpatient Sample (NIS) and ICD9-CM codes used to identify covariates included in our multivariable models.
DOI: 10.5061/dryad.t2c668d/2
title: Emydura_metadata

description: Specimen metadata to accompany the raw data file when read into a genlight object using gl.read.dart.2row.r in R package dartR.
DOI: 10.5061/dryad.t2c668d/3
title: svd
DOI: 10.5061/dryad.t2c668d/4
title: MBD_LEB

description: An input file for New Hybrids to examine admixture between the Murray Darling Basin and the Lake Eyre Basin, via the Paroo and Bulloo rivers. Generated using gl.nhybrids.r in the dartR package.
DOI: 10.5061/dryad.t2c668d/5
title: Fitzroy_Burdekin

description: An input file for New Hybrids to examine admixture between the Fitzroy River basin and the Burdekin River basin. Generated using gl.nhybrids.r in dartR package.
DOI: 10.5061/dryad.t2c668d/6
title: fitch_infile

description: An input file for Phylip to construct the distance phylogeny. Generated using gl2phylip.r in the dartR package.
DOI: 10.5061/dryad.t2c668d/7
title: emsth_treemix

description: A gzip file provided as input to treemix, generated by gl2treemix.r, for use with the unix commands
treemix -i emsth_treemix.gz -o emsth_treemix9 -root EmvicVict -m 9
plot_tree("emsth_treemix9", cex=0.05)
plot_resid("emsth_treemix9","poporder",cex=0.5)
DOI: 10.5061/dryad.t2c668d/8
title: Emydura_SNPs_2Row

description: Combined R scripts used to generate the results. Draws heavily on R package dartR (Gruber et al., 2018)
DOI: 10.5061/dryad.t2c668d/9
title: EmSth_mtDNA

description: A PAUP* nexus file for conducting the RAXML analysis of mtDNA sequence data.
DOI: 10.5061/dryad.t50q216/45
title: PsHemiptericin GNBPRNAi and Ec

description: Relative expression level to L32 (fig. 5e).
DOI: 10.5061/dryad.t50q216/46
title: PsHemiptericin GNBPRNAi and Ml

description: Relative expression level to L32 (fig. 5f).
DOI: 10.5061/dryad.t50q216/47
title: PsLysozyme b1 GNBPRNAi and Ec

description: Relative expression level to L32 (fig. 5g).
DOI: 10.5061/dryad.t50q216/48
title: PsLysozyme b1 GNBPRNAi and Ml

description: Relative expression level to L32 (fig. 5h).
DOI: 10.5061/dryad.t50q216/49
title: PsLysozyme c1 GNBPRNAi and Ec

description: Relative expression level to L32 (fig. 5i).
DOI: 10.5061/dryad.t50q216/50
title: PsLysozyme c1 GNBPRNAi and Ml

description: Relative expression level to L32 (fig. 5j).
DOI: 10.5061/dryad.t50q216/51
title: PsRelish RNAi timelapse

description: Relative expression level to L32 (fig. S12).
DOI: 10.5061/dryad.t50q216/52
title: PsImd RNAi check

description: Relative expression level to L32 (fig. S13a).
DOI: 10.5061/dryad.t50q216/53
title: PsMyD RNAi check

description: Relative expression level to L32 (fig. S13b).
DOI: 10.5061/dryad.vn42tj2/1
title: Data available from Dryad (Tables 1 and 2)

description: Table 1. The association of PD and other brain pathologies with the progression of parkinsonism in older adults in MAP and ROS alone.
Table 2. Pathology Risk Score Is Associated with the Rate of Progressive Parkinsonism in MAP and ROS alone.
DOI: 10.17632/bwf4xydp32.1
title: Data for: Effects of clay properties in the landslides Genesis in flysch massif: case study of Aïn Draham, North western Tunisia
DOI: 10.5061/dryad.0j18k00/1
title: Projected future climate analogs of 2020-2280 CE, using a baseline of geohistorical climates back to the Eocene

description: This dataset contains Matlab code to calculate multivariate distances. It compares future time periods (target) to a reference baseline (reference). Considering these one-to-many comparisons, the minimum multivariate distance for a focal location is defined as the closest analog. The input climate data, as well as output analog data, are included as well.
DOI: 10.5061/dryad.1d73qk4/1
title: Figure 3

description: Simulated data for determining p* for Figure 3
DOI: 10.5061/dryad.1jc66q0/1
title: Divergent management_Species and environmental data and R script

description: The file contains the input files and script used for analyses in R 3.2.2 assessing butterfly richness along a 
successional gradient in a grassland-timber plantation mosaic. Script is for the following analyses: calculation of rarefied species richness, 
plotting of rarefaction curves, linear mixed model to test for effect of seral stage on species richness, testing for correlated environmental
variables, model selection and averaging to determine effect of env variables on species richness, indicator value analysis. 
Base tables that were used for assemblage-level analyses in Primer 6 and Canoco 5 software are included as excel files.
DOI: 10.5061/dryad.1qb07gs/1
title: Perch_activity

description: This package contains the files required to reproduce the analyses reported in the article.
DOI: 10.5061/dryad.1r004vb/1
title: Data for-Personality and plasticity in neophobia levels vary with anthropogenic disturbance but not toxic metal exposure in urban great tits

description: This file contains data from a novel object test performed on incubating female great tits in Antwerp, Belgium, in 2018, to test for effects of toxic metal pollution and anthropogenic disturbance levels on neophobia and other behavioral traits.  Incubating females were presented with up to two different novel objects which were placed on the top of the nest box.  We recorded the latency of females to return to the nest ("On 1" in the file) in the presence of a novel object, after being flushed from the nest.  To account for differences in sensitivity to disturbance at the nest, the return latency of all females was also recorded during a baseline trial, in which females were flushed from the nest, but no novel object was placed on top of the box.  The file contains information on trial type (O = object, B = baseline), female ID, study site, nest box ID, distance from the metal pollution source, distance from public paths/roads,  and whether or not the box was in a publicly accessible area for all trials.  Nest date, recording time, the order of trials and female age (ASY=after second year, SY=second year) are also included.  The column "On 1" contains return latencies, and was our primary response variable.  Female novel environment exploration scores and hissing (nest defense) scores are also included, as are fledgling numbers.  This data was used to assess relationships between neophobia, other behavioral traits, and fitness.
DOI: 10.5061/dryad.32c2qh4/1
title: Online supplement

description: Supplemental file
DOI: 10.5061/dryad.40bv330/1
title: Benthic community data from towed-diver surveys around Jarvis Island

description: Benthic community data collected via towed-diver surveys in March – April of 2006, 2008 and 2010 for Jarvis Island. Divers were towed with instrumented boards at ~3 km h-1 suspended ~1 m above the benthos at a target depth of 15 m. The tow boards were equipped with a high-resolution digital SLR camera. The percent cover of five functional groups, namely hard coral (split in to four morphological subcategories: plating, branching, free living, and digitate), crustose coralline algae (CCA), macroalgae, turf algae, and soft coral was extracted from each image using Coral Point Count software with Excel extensions.

Column names as follows: PHOTOID- ID of individual photograph taken (month, day, year_tow number_photo number along that tow). ISLAND- The island the dataset is for, in this case JAR=Jarvis. DIVEYEAR- Year in which survey was conducted. LAT- Latitude and LON- Longitude of the camera position calculated from a layback model to accurately georeference each image position (WGS 1984). DEPTH- Depth of tow board (meters). TEMP- Temperature of tow board (degrees Celsius). The following are all percentage cover values for the major groups, BRAN- Branching coral, CCA- Crustose coralline algae, DIG- Digitate coral, MAC- Macroalgae, PLATE- Plating coral, SOFT- Soft coral, TURF- Turf.
DOI: 10.5061/dryad.40bv330/2
title: Submersible temperature recorder (STR) data from locations around Jarvis Island

description: Records from five SBE 39 STRs used to quantify long-term intra-island gradients in reef-level temperature. Each STR recorded temperature (0.002 degrees Celcius accuracy) on an hourly basis between 2004 and 2010. The data is in NetCDF format, and contains two 1-dimensional variables, temperature (degrees Celsius) and time (days since 0001-01-01 00:00:00). Note that STRs 006 and 022 are the same station, the logger was serviced and replaced.
DOI: 10.5061/dryad.40bv330/3
title: Total nitrogen concentrations from locations around Jarvis Island during 2006

description: Total nitrogen (NO2 + NO3) from water samples collected using a hand deployed 5 L Niskin bottle string at depths of 10 and 20 m (to match the depths of our benthic surveys – see below) at sites around the perimeter of Jarvis Island. Water samples (100 ml) were immediately pulled from each Niskin and frozen at -20 °C. The concentration of total nitrogen (NO2 + NO3) in each sample was later quantified at NOAA’s Pacific Marine Environmental Laboratories.

Column names as follows: LOC- Location on compass bearing of sample around Jarvis Island. SITE- Site label. DEPTH- Depth of sample (meters). LAT- Latitude and LON- Longitude of the of the Niskin deployment (WGS 1984). TOTALN- The concentration of total nitrogen (NO2 + NO3).
DOI: 10.5061/dryad.5qd036v/1
title: Sophoricoside
DOI: 10.5061/dryad.6hq8p8j/1
title: Table e-1

description: Supplemental Table listing ICD9-CM codes used to identify those with comorbid psychiatric disease.
DOI: 10.5061/dryad.785sc4d/1
title: Demographic data red coral Corallium rubrum

description: Demographic data for eight red coral (Corallium rubrum) populations in the NW Mediterranean Sea (Spain and France). This dataset includes colony size-based estimates of annual survival, shrinkage and fecundity rates of red coral populations subjected to different disturbances (fishing and warming) and a growth model based in coral colonies from two populations.
DOI: 10.5061/dryad.7947gd0/1
title: raw database

description: Raw data regarding the paper entitled "The Demanding Grey Zone: Sport Indices by Cardiac Magnetic Resonance Imaging Differentiate Hypertrophic Cardiomyopathy from Athlete’s Heart" is presented in the current file. Codes applied in the database are presented in a separate spreadsheet. Abbreviations are listed in the manuscript.
DOI: 10.5061/dryad.7jv4466.2
title: Data from: Ocean warming and acidification may challenge the riverward migration of glass eels
DOI: 10.5061/dryad.7jv4466.2/4.2
title: Santos&Borges_etal_Data

description: In this file, the data from our study on the influence of ocean warming and ocean acidification on the riverward migration of glass eels is present. These include survival and behavioural outputs as well as a code sheet for easier table read. The tables are R software ready and can be exported as '.csv' in order to run in the Rscript.
DOI: 10.5061/dryad.7jv4466.2/5.2
title: Santos&Borges_etal_Rscript

description: This is the code for the Rscript of the statistical analysis performed in our study.
DOI: 10.5061/dryad.7p048mk/1
title: Gender outcomes_anonymized

description: Gender, review scores and editorial decisions for the first submissions of all standard papers (re-submissions and non-standard papers are deleted) submitted to Evolution, Functional Ecology (FE), Journal of Applied Ecology (JAPPL), Journal of Animal Ecology (JANIM), Journal of Ecology (JECOL) and Methods in Ecology and Evolution (MEE) over the period of our study. These data allow recreation of nearly all analyses in the published manuscript. Data on geographic location of authors is not included to ensure the dataset cannot be de-anonymized.
DOI: 10.5061/dryad.8076h3r/1
title: Data Supplement

description: Supplementary Tables (e-1, e-2, e-3),                   Supplementary Figures (e-1, e-2, e-3),                   METASTROKE Acknowledgments
DOI: 10.5061/dryad.83dv5j7/1
title: Numerical data table

description: Numerical data from figures 1-5. The table contains cellular data for morphology, physiology and modelling used in the article.
DOI: 10.5061/dryad.8qm8r4m/1
title: Sighting histories_juveniles&adults_Robust Design models

description: This file contains the monthly sighting histories of 205 marked juvenile and adult bottlenose dolphins sighted off the east coast of Scotland between 1989 and 2015, and used to estimate survival rate using a robust design modelling framework. The file can be imported into RMark, and then converted to an .inp file to fit mark-recapture models (using MARK software). Time intervals (i.e. primary and secondary occasions) for robust design analysis are given in the file "time.intervals.txt"
DOI: 10.5061/dryad.8qm8r4m/4
title: Sighting histories_adults only_Robust Design models

description: This file contains a restricted dataset of only adult bottlenose dolphins, sighted off the east coast of Scotland between 1989 and 2015. The monthly sighting histories were used to investigate if the detected trend in juvenile&adult survival was more likely a change in adult or juvenile survival. The file can be imported into RMark, and then converted to an .inp file to fit mark-recapture models (using MARK software). Time intervals (i.e. primary and secondary occasions) for robust design analysis are given in the file "time.intervals.txt"
DOI: 10.5061/dryad.8qm8r4m/5
title: Time intervals for Robust Design models

description: This file contains the time intervals (primary and secondary occasions) defined for the datasets JuvAd_Robust design models.txt and Adult only_Robust design models.txt. These time intervals are defined to use in RMark package when fitting mark-recapture models.
DOI: 10.5061/dryad.979f850/1
title: CanaryBarley

description: Dataset accompanying Hagenblad et al. Morphological and genetic characterization of barley (Hordeum vulgare L.) landraces in the Canary Islands, Genet Res Crop Evol.
DOI: 10.5061/dryad.9hr4060/1
title: pac2DataDRYAD

description: Datasets that accompany: Reynolds TL, DeLucia PR, Esquibel KA, Gage T, Wheeler NJ, Randell JA, Stevenson JG, Zheng K. Evaluating a Handheld Decision Support Device in Pediatric Intensive Care Settings. The objective of this study was to evaluate end-user acceptance and the effect of a commercial handheld decision support device in pediatric intensive care settings. The technology, pac2, was designed to assist nurses in calculating medication dose volumes and infusion rates at the bedside.
DOI: 10.5061/dryad.c69g0d5/1
title: Seed viability

description: Seed viability.zip contains all species viability data used in generating species species t50 curves, all seed and plant traits used in the analysis as well as moisture content of seeds following hydration each RH level for two weeks.
DOI: 10.5061/dryad.d9b02tp/1
title: SNP genotypes and mycorrhizal phenotype data for loblolly pine population in Southern Mississippi

description: This file contains data for 152 loblolly pine genotypes (column 'Tree').  The next 4512 columns contain SNP marker data, followed by 14 columns of ectomycorrhizal colonization data.
DOI: 10.5061/dryad.fb17m59/4
title: Morphology_Erken

description: TPS morphology file
DOI: 10.5061/dryad.fb17m59/5
title: Data genodive microsatellite

description: Microsatellite genodive file
DOI: 10.5061/dryad.fp11572/1
title: data used for analyses

description: original data
DOI: 10.5061/dryad.h544560/2
title: high myopia database
DOI: 10.5061/dryad.j406q83/1
title: EMG and mechanical work of foot during stepping

description: September 10 2018

This dataset was constructed using Matlab 2017b.

The data are organized into three structures: 'Down', 'Level', and 'Up' which contain the data for the corresponding condition.

At the deepest level of each structure, the data are organized into matrices where each row corresponds to the stance phase data of a single step for a single subject. The total number of rows is equal to the number of total steps across all subjects for that condition. The number of columns represents the average length of stance phase for that condition across all participants at a down-sampled rate of 150 Hz.

There are two exceptions to this format:
1) The field 'StanceTime' is an array in which each element is the duration of stance time for each stance time in seconds.
2) The field 'Subject' is an integer array where each element corresponds to the subject from which the data come from.

Moment data are normalized by the weight of the participant and are in units of Nm/kg.
Force data are normalized by the weight of the participant and are in units of Nm/kg.
Power data are normalized by the weight of the participant and are in units of W/kg.
EMG data are normalized on a range of 0 to 1 based on the minimum and maximum EMG recorded during the stance phase of all conditions on a per-participant basis.
Speed data are in units of m/s.
Length data are in units of m.
DOI: 10.5061/dryad.kc835.6/1.6
title: M6_v4.1_masked_PM.fa

description: Masked pseudomolecules of S. chacoense M6, containing 12 chromosomes
DOI: 10.5061/dryad.kc835.6/13.6
title: M6_v4.1_PM.fa

description: Pseudomolecules of S. chacoense M6, containing 12 chromosomes
DOI: 10.5061/dryad.kc835.6/15.6
title: M6_v4.1_scaffold.agp

description: AGP file describing the assembly of S. chacoense M6 scaffolds within the pseudomolecules
DOI: 10.5061/dryad.kc835.6/16.6
title: m6.hc.gene_models.all_chrs.gff

description: Generic feature format file (gff3) of high-confidence genes in S. chacoense M6, including ChrUn
DOI: 10.5061/dryad.kc835.6/3.6
title: short_summary_BUSCO_output.txt

description: Output file from running BUSCO on the genome assembly
DOI: 10.5061/dryad.kc835.6/4.6
title: full_table_BUSCO_output.tsv

description: Output file from running BUSCO on the genome assembly
DOI: 10.5061/dryad.kc835.6/5.6
title: m6.hc.gene_models.chr.gff3

description: Generic feature format file (gff3) of high-confidence genes in S. chacoense M6 (Corrected version as of 06/2018)
DOI: 10.5061/dryad.kc835.6/6.6
title: pasa_m6.hc.gene_models.cdna.fa

description: Transcript sequences (cDNA) of high-confidence genes in S. chacoense M6
DOI: 10.5061/dryad.kc835.6/7.6
title: pasa_m6.hc.gene_models.cds.fa

description: Coding sequences (CDS) of high-confidence genes in S. chacoense M6
DOI: 10.5061/dryad.nc3g27s/1
title: Structure input file

description: The input file to recreate the structure analysis
DOI: 10.5061/dryad.q3fv55j/1
title: PlantGrowth

description: Plant species growth data incluiding initial predicted biomass