cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/y8wdbn458k.1
title: Negative impacts of free migration

description: Free migration is a common phenomenon in socio-economic development leading to population change and labor redistribution by territory. The process of redistributing labor through migration is one of the crucial factors for socio-economic development, especially concerning natural resources and the environment. It also leads to a negative impact on the increase and assurance of national defense and security. The article analyzes and evaluates the negative impacts of the free migration of ethnic minorities in the northern mountainous provinces of Vietnam on socio-economic development and national defense security assurance. Free migration for ethnic minorities in the northern mountainous areas of Vietnam has caused consequences for a long time. Therefore, the proposal of solutions in this article to reduce the pessimistic effects of free migration aims to meet a dilemma in theory and practice. Achieving this goal article uses both qualitative and quantitative research methods on SEM model analysis to assess the negative impacts of the free migration of ethnic minorities in the northern mountainous provinces for immigration, emigration, and migrants. From there, the work draws policy recommendations for local authorities to limit negative impacts to ensure sustainable development goals. The analysis results of the article contribute to a complete awareness of the negatives of free migration in Vietnam, and Vietnam's policies in solving this problem also contribute to the section that provides data analyzing the situation of free migration in the world.
DOI: 10.17632/8xtcr9pn6h.1
title: Structural insights into the ion selectivity of the MgtE channel for Mg2+ over Ca2+

description: SDS–PAGE gel pictures for Figure S2
DOI: 10.17632/kn5f76dzwd.1
title: Ferns of Mashpi

description: This data summarizes the data of a first survey of terrestrial ferns at Mashpi Biodiversity Reserve, an Ecuadorian Chocó forest relict, one of the most biodiverse areas in the world.  We include two tables, the first one include a species list with the abundance of each species per plot, the total abundance per plot and the species richness per plot. The second one contains measurements of the leaf length and leaf thickness of several leaf samples of 28 species.
DOI: 10.17632/kn5f76dzwd.2
title: Ferns of Mashpi

description: This data summarizes the data of a first survey of terrestrial ferns at Mashpi Biodiversity Reserve, an Ecuadorian Chocó forest relict, one of the most biodiverse areas in the world.  We include two tables, the first one include a species list with the abundance of each species per plot, the total abundance per plot and the species richness per plot. The second one contains measurements of the leaf length and leaf thickness of several leaf samples of 28 species.
DOI: 10.17632/kn5f76dzwd.3
title: Ferns of Mashpi

description: This data summarizes the data of a first survey of terrestrial ferns at Mashpi Biodiversity Reserve, an Ecuadorian Chocó forest relict, one of the most biodiverse areas in the world.  We include two tables, the first one include a species list with the abundance of each species per plot, the total abundance per plot and the species richness per plot. The second one contains measurements of the leaf length and leaf thickness of several leaf samples of 28 species.
DOI: 10.17632/kn5f76dzwd.4
title: Ferns of Mashpi

description: This data summarizes the data of a first survey of terrestrial ferns at Mashpi Biodiversity Reserve, an Ecuadorian Chocó forest relict, one of the most biodiverse areas in the world.  We include tree tables, the first one includes the species with the vouchers, the second one includes a species with the abundance of each species per plot. The third one contains measurements of the leaf length and leaf thickness of several leaf samples of 28 species.

It is also included another file with an R script to calculate the abundance of each species per plot, the total abundance per plot,  the species richness per plot and diversity index per plot.
DOI: 10.17632/wjpsjnf859.1
title: The effect of fault-induced compaction on petrophysical properties of deformation bands in poorly lithified sandstones

description: In this supplementary material you can find the detailed method used to estimate the capillary pressure in this work. In the same file, we inserted the results and methods referred to the applied chemical analyses to support our interpretation. Detailed interpretation can e find in the main text entitled "The effect of fault-induced compaction on petrophysical properties of deformation bands in poorly lithified sandstones".
DOI: 10.17632/wjpsjnf859.2
title: The effect of fault-induced compaction on petrophysical properties of deformation bands in poorly lithified sandstones

description: In this supplementary material you can find the detailed method used to estimate the capillary pressure in this work. In the same file, we inserted the results and methods referred to the applied chemical analyses to support our interpretation. Detailed interpretation can e find in the main text entitled "The effect of fault-induced compaction on petrophysical properties of deformation bands in poorly lithified sandstones".
DOI: 10.6084/m9.figshare.21590274.v1
title: Round 4 - Parent survey

description: The folder contains datasets from the parent survey of primary school grade 2 students in Vietnam in 2019.
DOI: 10.6084/m9.figshare.21590274
title: Round 4 - Parent survey

description: The folder contains datasets from the parent survey of primary school grade 2 students in Vietnam in 2019.
DOI: 10.17632/bvm34vht7r.1
title: LINF_330039000

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/38d7vv96m9.1
title: Original Code for main analyses of Kerner et al., 'Genetic adaptation to pathogens and increased risk of inflammatory disorders in post-Neolithic Europe', 2022

description: Code for reproducing main analyses of Kerner et al., Genetic adaptation to pathogens and increased risk of inflammatory disorders in post-Neolithic Europe (2022).

In this work, we use simulations and an approximate Bayesian computation (ABC)  approach based on time-series of allele frequency trajectories computed from publicly available ancient DNA (1240k capture array) to unravel candidate variants and loci under natural selection over the last 10,000 years in Europe.

For candidate regions, we estimate, at the variant level, selection intensity (s) assuming an additive model with a dominance coefficient of 0.5, and onset of selection (T), i.e., the age at which selection started.

We discover 89 loci, defined on the basis of LD, that are candidates for positive selection and 50 missense variants at conserved positions of the genome that are candidates (p <0.01) for negative selection.

We perform enrichment analyses to assess the impact of the positively-selected loci (see scripts) and functional analyses to assess the pathogenic role of the candidate negatively-selected variants (see paper).

We describe also a polygenic risk score-based approach to study the evolution of variants associated in present-day Europeans by GWAS to infectious and autoimmune traits.

Code is meant to comprehend analyses relating to the main findings of this work. Folders contain code relating to 1) Scans of Selection, 2) Onset of selection analyses, 3) Enrichment analyses and 4) Polygenic risk score analyses.
DOI: 10.17632/v3m3jwm5mg.1
title: Comparison of large-scale ship exhaust emissions across multiple resolutions: From annual to hourly data

description: Annual ship exhaust emissions for 2014 within 300 km of Sydney, Australia, at approximately 1 km resolution, together with activity hours.
DOI: 10.17632/vzd5nncy7h.1
title: LINF_330038900

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/5r94ztgm3w.1
title: LINF_330038800

description: hypothetical protein, conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/267nm35jps.1
title: Qunatifying variations in serum total PSA, BMI and ECOG score in the first 6months of ADT for advanced prostate cancer in a low resource setting 

description: This dataset is generated from an observational cohort study designed to quantify the variations that occur in the serum total PSA, BMI and in the physical performance measured with ECOG. The study population is men with advanced prostate cancer on androgen deprivation therapy. It is in a low resource, low socio-economic setting.
DOI: 10.17632/y9htx3fcjm.1
title: P. aeruginosa Genome-scale Metabolic Network - CCBM1146

description: Metabolic network model of P. aeruginosa CCBM1146: an improved version of the IMO1056 model genome-scale metabolic network.
The model -CCBM1146- which we propose, consists of 1146 genes encoding for 826 enzymes, 136 protein complexes, and transport proteins; it contains 1123 reactions and 880 metabolites.
The first sheet of the excel file contains all data of the metabolic model (description of the model). The second sheet contains data about the metabolites list included in the model. The third sheet contains information of the Biomass reaction. And the fourth sheet contains data to perform the Flux Balance Analysis.
DOI: 10.17632/t9zvgv6d9s.1
title: Supplemental Materials for Survival benefit of sentinel lymph node biopsy in Asian melanoma patients: A retrospective cohort study

description: Mendeley Supplemental Tables and Figures for Survival benefit of sentinel lymph node biopsy in Asian melanoma patients: A retrospective cohort study

Supplemental Table 1. Univariate Analysis for Death from Melanoma and Disease Recurrence.
Supplemental Table 2. Univariate Analysis of the Prognostic Value of Disease Free Survival Stratified by 
Gender.
Supplemental Figure 1. Kaplan-Meier curves of disease-free survival in patients who underwent SLNB (n = 155) 
versus nodal observation (OBS) (n = 59). The p-value was calculated with the log-rank test.
Supplemental Figure 2. Kaplan-Meier curves of disease-free survival in patients who underwent SLNB versus nodal 
observation (OBS) in male and female subgroups. (a) male subgroup (n = 101) (b) female subgroup (n = 113). All pvalues were calculated with the log-rank test.
DOI: 10.17632/hcd7hr7kbp.1
title: Signal intensities of floral cyanogenic glycosides obtained via MALDI-MSI

description: Fresh florets of four Australian native Proteaceae species (Grevillea robusta, Macadamia tetraphylla, Neorites kevedianus and Telopea speciosissima) were collected and prepared for matrix-assisted laser desorption/ionization-mass spectrometry imaging (MALDI-MSI) to visualise cyanogenic glycosides within floral sections using the methods described in Ritmejerytė et al. (2020, 2022) [1,2]. Acquired MSI data were imported into SCiLS Lab software 2017a, in which regions of interest were selected for comparing distributions of two identified cyanogenic glycosides between different tissue types. The signal intensities for each tissue type were then exported as .csv files, with each individual data point indicating the signal intensity of a specific cyanogenic glycoside at each pixel of the imaged section. The data were plotted as box-dot plots using RStudio code "Intensities".

Floral developmental stages for each dataset:
G. robusta - fertilised floret
M. tetraphylla - partially open flower with pollen presenter embedded in perianth
N. kevedianus - fertilised floret
T. speciosissima - open floret

.xlsx files contain raw signal intensities and an image of the floral section imaged with marked regions (tissue types). 
.csv files contain modified signal intensities (divided by 100,000) which is then noted in the y axis title in the figure. Column "Compound" contains two cyanogenic glycosides each detected as +Na and +K adducts, and "Compound2" column contains the ID of cyanogenic glycoside without noting its adduct, which was used to create the plots.

References:
1.	Ritmejerytė E, Miller RE, Bayly MJ, Boughton BA. Chapter 3 - Visualization of cyanogenic glycosides in floral tissues. In: Beale DJ, Hillyer KE, Warden AC, Jones OAH, editors. Applied Environmental Metabolomics: Academic Press; 2022. p. 29-44.
2.	Ritmejerytė E, Boughton BA, Bayly MJ, Miller RE. Unique and highly specific cyanogenic glycoside localisation in stigmatic cells and pollen in the genus Lomatia (Proteaceae). Annals of Botany. 2020;126(3):387-400. doi: 10.1093/aob/mcaa038.
DOI: 10.17632/t45xdpkmy7.1
title: Marmoset Brain Mapping V1

description: Abstract The common marmoset (Callithrix jacchus) is a New-World monkey of growing interest in neuroscience. Magnetic resonance imaging (MRI) is an essential tool to unveil the anatomical and functional organization of the marmoset brain. To facilitate identification of regions of interest, it is desirable to register MR images to an atlas of the brain. However, currently available atlases of the marmoset brain are mainly based on 2D histological data, which are difficult to apply to 3D imaging techniques. Here, we constructed a 3D digital atlas based on high-resolution ex-vivo MRI images, including magnetization transfer ratio (a T1-like contrast), T2w images, and multi-shell diffusion MRI. Based on the multi-modal MRI images, we manually delineated 54 cortical areas and 16 subcortical regions on one hemisphere of the brain (the core version). The 54 cortical areas were merged into 13 larger cortical regions according to their locations to yield a coarse version of the atlas, and also parcellated into 106 sub-regions using a connectivity-based parcellation method to produce a refined atlas. Finally, we compared the new atlas set with existing histology atlases and demonstrated its applications in connectome studies, and in resting state and stimulus-based fMRI. The atlas set has been integrated into the widely-distributed neuroimaging data analysis software AFNI and SUMA, providing a readily usable multi-modal template space with multi-level anatomical labels (including labels from the Paxinos atlas) that can facilitate various neuroimaging studies of marmosets.
DOI: 10.6084/m9.figshare.21590277
title: Round 4 - Student survey

description: The dataset contains information for the student survey on primary school grade 2 students in Vietnam in 2019.
DOI: 10.6084/m9.figshare.21590277.v1
title: Round 4 - Student survey

description: The dataset contains information for the student survey on primary school grade 2 students in Vietnam in 2019.
DOI: 10.17632/4vggkbtf8w.1
title: Photos of various stages of micropropagation of Alpinia zerumbet 

description: Various stages of micropropagation of Alpinia zerumbet
DOI: 10.6084/m9.figshare.21590283
title: Round 4 - Teacher survey

description: The folder contains datasets from the teach survey of primary school grade 3 and grade 2 teachers in Vietnam in 2019.
DOI: 10.6084/m9.figshare.21590283.v1
title: Round 4 - Teacher survey

description: The folder contains datasets from the teach survey of primary school grade 3 and grade 2 teachers in Vietnam in 2019.
DOI: 10.17632/y44hrk82mx.1
title: Morphological features of Alpinia zerumbet in photos

description: Morphological features of Alpinia zerumbet
DOI: 10.17632/kgng2kb8y6.1
title: Supplements for manuscript: Automated classification of hidradenitis suppurativa disease severity by convolutional neural network analyses using clinical images – a prospective study.

description: Figure legends:

Supplemental Fig 1. Study workflow and CNN architecture: The dynamics of the disease were estimated using method A (mixed neural network) and method B with its segmentation variants were implemented to predict the severity scores and localization of lesion area, respectively.

Supplemental Fig 2. Individual Typology Angle (ITA°) map. According to their ITA°, individuals were assigned to one of seven skin classification categories. To see if the difference between actual Fitzpatrick (Expert) and ITA phototype (Scarletred®Vision) are significant, a Mann Whitney U Test was conducted (n=149, significance level 5%). The null hypothesis for this test states that there will be no significant difference between the two groups. The test resulted in a p-value of ≈ 0.09 (> 0.05). Therefore, there is no significant difference between the two groups which supports Scarletred®Vision robustness to compute the ITA° related phototype. 

Supplemental Fig 3. Images were signal augmented and analyzed by measuring SEV*, L*, +a* and +b* values. Clear trends were observed in the SEV*_meandt-refdt and +a*_meandt-refdt (dark green squares, p<0.001), indicating the importance of the SEV* for classification and lesion detection also in this study 13.

Supplemental Fig 4. The CNN predicted score aligned with changes of the IHS4, reflecting HS specific dynamics.
DOI: 10.25381/cput.21516432
title: Voice Recordings from the Focus Group Discussion and Semi Structured Interview

description: These files are that of voice recordings that were taken during the focus group discussion and semi structured interview concerning the opionions of the participants on the focus my study. <br> Ethical Clearance: EFEC 13-2/2020 (CPUT) 20200814-7515 (WCED)
DOI: 10.6084/m9.figshare.19363997.v2
title: Figures, Tables, and Supplementary Info

description: Figures, tables, and supplementary information.
DOI: 10.17632/ddv53zsf9m.1
title: Analysis of Electric Vehicle Charging Station Usage and Profitability in Germany based on Empirical Data 

description: Data generated in the context of the paper creation "Analysis of Electric Vehicle Charging Station Usage and Profitability in Germany based on Empirical Data" to be published with iScience. The data contains usage patterns of various types of electric vehicle charging stations in Germany in the period 2019 - 2021. You find further detailed in the published study.
DOI: 10.17632/9bpszg78pv.1
title: Google Trends as a tool to measure searches for leisure and recreation in the COVID-19 pandemic 

description: Dataset from the Google Trends as a tool to measure searches for leisure and recreation in the COVID-19 pandemic research.
DOI: 10.17632/xtgxdcbk9f.1
title: Data: The Effect of the COVID-19 Pandemic on Risk of Corruption

description: This data repository stores the data for the working paper: The Effect of the COVID-19 Pandemic on Risk of Corruption. The data consists of monthly contract data statistics for 64 federal institutions in Mexico for the period 2018 to 2020.
DOI: 10.17632/by3xyj6jh5.1
title: Pronounced names of surgical instruments

description: This dataset comprises annotated voice recordings of multiple subjects pronouncing the names of four surgical instruments in English.  The voice recordings in the proposed dataset are acquired from volunteering Egyptian physicians who are non-native English speakers over the course of two months. The voice recordings are collected by using WhatsApp messaging app. The dataset is divided into four voice recordings sub-datasets corresponding to the pronounced names of the four surgical instruments, with ten voice recording samples acquired from each speaker for each surgical instrument sub-dataset. The pronounced names of the surgical instruments are “Scalpel”, “Straight Dissection Clamp”, “Straight Mayo Scissor”, and “Curved Mayo Scissor”. The proposed dataset consists of 12 speakers with a total of 405 data samples and approximately one hour of total speech recordings. The proposed voice recordings dataset is appropriate for training and validating different automatic speech recognition systems.
DOI: 10.17632/by3xyj6jh5.2
title: Pronounced names of surgical instruments

description: This dataset comprises annotated voice recordings of English words/phrases pronounced by different subjects for the names of several commonly used surgical instruments.  The collected samples of voice recordings in the proposed dataset are acquired from volunteering physicians who are non-native English speakers. The voice recordings are collected over the duration of 2 months using WhatsApp messaging app. The dataset is divided into 4 voice recordings sub-datasets corresponding to the pronounced names of 4 surgical instruments, with 10 voice recording samples acquired from each speaker for each surgical instrument. The pronounced names of the surgical instruments are “Scalpel”, “Straight Dissection Clamp”, “Straight Mayo Scissor”, and “Curved Mayo Scissor”. For constructing the proposed dataset, 12 speakers have participated, a total of 405 data samples is collected, and approximately one hour of total speech recordings is acquired. The proposed voice recordings dataset is appropriate for training and validating various automatic speech recognition systems related to healthcare and surgical applications.
DOI: 10.17632/by3xyj6jh5.3
title: Pronounced names of surgical instruments

description: This dataset comprises annotated voice recordings of English words/phrases pronounced by different subjects for the names of several commonly used surgical instruments.  The collected samples of voice recordings in the proposed dataset are acquired from volunteering physicians who are non-native English speakers. The voice recordings are collected over the duration of 2 months using WhatsApp messaging app. The dataset is divided into 4 voice recordings sub-datasets corresponding to the pronounced names of 4 surgical instruments, with 10 voice recording samples acquired from each speaker for each surgical instrument. The pronounced names of the surgical instruments are “Scalpel”, “Straight Dissection Clamp”, “Straight Mayo Scissor”, and “Curved Mayo Scissor”. For constructing the proposed dataset, 12 speakers have participated with a total of 400 filtered data samples and approximately 11 minutes of total speech recordings are acquired. The proposed voice recordings dataset is appropriate for training and validating various automatic speech recognition systems related to healthcare and surgical applications.
DOI: 10.17632/h2rw8s4r84.1
title: Isolation, identification, and the molecular binding mechanisms of cyclooxygenase-2 inhibitory peptides from walnut dregs

description: raw data
DOI: 10.17632/t2m927fj5p.1
title: Pulse assessment as an auxiliary tool to predict the severity of chemotherapy-induced myelosuppression: An observational study in patients with breast cancer

description: Abstract: 
Introduction: Bone marrow suppression is a common side effect after chemotherapy and may lead to failure of cancer treatment. However, there is currently no effective assessment tool to predict the severity of myelosuppression for early intervention.
Methods: 35 patients were enrolled in this study. The assessment of radial pressure pulse (RPP) was performed before and after chemotherapy. The correlation between the spectral energy (SE0–10 Hz, SE10–50 Hz, and SE13–50 Hz) of the RPP at six diagnosis positions and the blood cell counts before and after chemotherapy were analyzed. 
Results: Data analysis found that patients with a higher pre-chemotherapy neutrophilic ratio before chemotherapy correlated with higher spectral energy of the right Chun, right Chi, and left Chi. After chemotherapy, the WBC counts was negatively correlated with the right Chi at 0–10 Hz  and 13–50 Hz, and the absolute neutrophil count (ANC) was negatively correlated with the right Chi at 0–10 Hz, 10-50Hz and 13–50 Hz.
Conclusions: The major finding of this study is that the spectral energy of the right Chi correlated with the severity of post-chemotherapy neutropenia, validating the TCM theory that the right Chi pulse corresponds to the relationship of “Kidney yang and essence” and the bone marrow. It was also found through this study that the pre-chemotherapy WBC segment percentage positively correlated with spectral energy of the right Chun, left Chi and Right Chi pulse position, indicating a correlation between the immune system and Defense Qi theory in TCM. This study was registered as a clinical trial: ClinicalTrials.gov ID: NCT05442177.
DOI: 10.17632/4vx4c4dmzf.1
title: Chimpanzee nests, human and animal signs datasheets, r script and workspace.

description:  Data collected in Bili-Uere (DRC) by Dr. T. Hicks from 2004 to 2012.