cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30198412.v1
title: Data and Code for Chagumaira et al "Communicating expected uncertainty in a geostatistical survey"

description: R code for the analyses questionnaire contingency partition analysis presented by Chagumaira et al "Communicating uncertainties in spatial predictions of grain micronutrient concentration." The data provided with this script are anonymized and contain no personal information about participants in the study. This is in accordance with the terms under which ethical approval for the study which was granted by University of Nottingham School of Biosciences Research Ethics Committees (SBREC202122022FEO). We hold consent forms from all participants which record that they understand and have given informed consent to these terms. Note that oversight of research ethics for this work by the University of Nottingham was undertaken in agreement with research partners in Malawi and Ethiopia, where research into and capacity strengthening for research ethics for food system studies is part of the scope of the GeoNutrition Project (Bill and Melinda Gates Foundation, INV-009129).
DOI: 10.13140/rg.2.2.27833.22883
title: Historical mannequins: bust 40, waist 27. VIDEO
DOI: 10.13140/rg.2.2.14411.45600
title: Historical mannequins: bust 38, waist 26. VIDEO
DOI: 10.6084/m9.figshare.30179629
title: <b>Green Prompt Engineering: Investigating the Energy Impact of </b><b>Prompt Design in Software Engineering</b>

description: This replication package contains the raw data, scripts, and necessary materials to reproduce the research study titled "<b>Green Prompt Engineering: Investigating the Energy Impact of </b><b>Prompt Design in Software Engineering</b>". The package is organized into several directories, each containing specific types of files such as datasets, scripts, measurements, and analysis notebooks.
DOI: 10.6084/m9.figshare.30179629.v2
title: <b>Green Prompt Engineering: Investigating the Energy Impact of </b><b>Prompt Design in Software Engineering</b>

description: This replication package contains the raw data, scripts, and necessary materials to reproduce the research study titled "<b>Green Prompt Engineering: Investigating the Energy Impact of </b><b>Prompt Design in Software Engineering</b>". The package is organized into several directories, each containing specific types of files such as datasets, scripts, measurements, and analysis notebooks.
DOI: 10.6084/m9.figshare.30179629.v1
title: <b>Green Prompt Engineering: Investigating the Energy Impact of </b><b>Prompt Design in Software Engineering</b>

description: This replication package contains the raw data, scripts, and necessary materials to reproduce the research study titled "<b>Green Prompt Engineering: Investigating the Energy Impact of </b><b>Prompt Design in Software Engineering</b>". The package is organized into several directories, each containing specific types of files such as datasets, scripts, measurements, and analysis notebooks.
DOI: 10.13140/rg.2.2.31188.67200
title: Historical mannequins: bust 36, waist 25. VIDEO
DOI: 10.15468/dl.4gpu6x
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leersia hexandra",
 "Country is Haiti",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018572-250920141307145/datasets/export for details.
DOI: 10.15468/dl.c273y2
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leersia hexandra",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018573-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wsz45v
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leersia hexandra",
 "Country is Madagascar",
 "HasCoordinate is true"
 ]
}

 The dataset includes 113 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018576-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.13572.59527
title: Historical mannequins: bust 46, waist 28. VIDEO
DOI: 10.15468/dl.sh6cu3
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample)",
 "DatasetKey is one of (Triplehorn Insect Collection, The Ohio State University, Field Museum of Natural History (Zoology) Insect, Arachnid and Myriapod Collection, Illinois Natural History Survey Insect Collection, University of Kentucky Insect Collection, BugGuide - Identification, Images, & Information For Insects, Spiders & Their Kin For the United States & Canada, New Mexico State Collection of Arthropods, Snow Entomological Museum Collection, Santa Barbara Museum of Natural History Entomology Collection, Auburn University Museum of Natural History Entomology, International Barcode of Life project (iBOL), Coleção Entomológica do Setor Palotina, Universidade Federal do Paraná, Insecta of Costa Rica (INBio), University of Texas, Biodiversity Center, Entomology Collection (UTIC), Recent Invertebrates Specimens, Colección de insectos agrícolas del proyecto diversidad en sistemas de cultivos, San Diego Natural History Museum Entomology Department, University of Delaware Insect Research Collection, Insectos asociados a cultivos de hortalizas con criterios agroecológicos en el departamento del Magdalena, University of California Santa Barbara Invertebrate Zoology Collection, Insectarium de Montréal (IMQC), Texas A&M University Insect Collection, Entomology Collection at the Natural History Museum of Utah, Monitoreo de insectos benéficos asociados a Diaphorina citri en los departamentos de La Guajira y Santander, Artrópodos y microroganismos asociados al cultivo del guandul en los departamentos del Atlántico y Magdalena, CAS Entomology (ENT), Northern Arizona University - Walnut Canyon National Monument Collection, Computarización de la colección científica del proyecto de control biológico de malezas de CSIRO-Australia)",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "LifeStage is Adult",
 "TaxonKey is Cycloneda sanguinea"
 ]
}

 The dataset includes 165 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018575-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30217327
title: Supplementary Material for: Bowel preparation for colonoscopy: the patient point of view.

description: Background: Colonoscopy is a common procedure that requires adequate bowel preparation. Polyethylene glycol (PEG) is widely used but commonly associated with patient complaints, including the split-dose administration schedule. Mannitol could be an attractive alternative as it acts quickly, requires low volumes, and is palatable. A recent Phase III international, multicenter, randomized study (SATISFACTION) compared the efficacy and safety of bowel preparation using same-day oral mannitol or a split-dose regimen of 2L PEG-ASC. Objectives: This study investigated the effects of the two laxatives on the Bowel Cleansing Impact Review (BOCLIR), a questionnaire exploring the degree of satisfaction of patients undergoing preparation for a colonoscopy. Methods: The BOCLIR measures the acceptability and tolerability of bowel cleansers on three unidimensional scales (satisfaction, symptoms, and activity limitations). The total score is the sum of the three sub-scores and ranges from 0 to 108, with higher scores representing worse patient experiences. Results: This post hoc analysis included 476 patients who completed the BOCLIR questionnaire: 236 in the mannitol group and 240 in the PEG-ASC group. The difference in the least square means of the total score was –8.01 (95% CI –10.70 to –5.31), with a highly significant difference in favor of mannitol (p˂0.0001). Conclusions: This post hoc analysis of the SATISFACTION study shows that bowel preparation with mannitol was far preferable to PEG-ASC in terms of acceptability and tolerability. Based on these results, mannitol may be close to an ideal preparation from the patient’s point of view.
DOI: 10.6084/m9.figshare.30217327.v1
title: Supplementary Material for: Bowel preparation for colonoscopy: the patient point of view.

description: Background: Colonoscopy is a common procedure that requires adequate bowel preparation. Polyethylene glycol (PEG) is widely used but commonly associated with patient complaints, including the split-dose administration schedule. Mannitol could be an attractive alternative as it acts quickly, requires low volumes, and is palatable. A recent Phase III international, multicenter, randomized study (SATISFACTION) compared the efficacy and safety of bowel preparation using same-day oral mannitol or a split-dose regimen of 2L PEG-ASC. Objectives: This study investigated the effects of the two laxatives on the Bowel Cleansing Impact Review (BOCLIR), a questionnaire exploring the degree of satisfaction of patients undergoing preparation for a colonoscopy. Methods: The BOCLIR measures the acceptability and tolerability of bowel cleansers on three unidimensional scales (satisfaction, symptoms, and activity limitations). The total score is the sum of the three sub-scores and ranges from 0 to 108, with higher scores representing worse patient experiences. Results: This post hoc analysis included 476 patients who completed the BOCLIR questionnaire: 236 in the mannitol group and 240 in the PEG-ASC group. The difference in the least square means of the total score was –8.01 (95% CI –10.70 to –5.31), with a highly significant difference in favor of mannitol (p˂0.0001). Conclusions: This post hoc analysis of the SATISFACTION study shows that bowel preparation with mannitol was far preferable to PEG-ASC in terms of acceptability and tolerability. Based on these results, mannitol may be close to an ideal preparation from the patient’s point of view.
DOI: 10.13140/rg.2.2.16928.03845
title: Historical mannequins: bust 42, waist 26. VIDEO
DOI: 10.6084/m9.figshare.30217330
title: Supplementary Material for: Short-term topical minoxidil use associated with acute central serous chorioretinopathy: A case report

description: Introduction: Minoxidil is a topical, over-the-counter, FDA-approved drug used to treat male and female pattern hair loss. Three case reports were published associating long term use of topical minoxidil to CSCR after four, six and eight months of use. In this report, we will present a case of CSCR after one week of topical minoxidil use that resolved with discontinuation of medication and observation six weeks later.
Case presentation: A 34-year-old Hispanic male presented with a two-week history of central visual loss and flashes in the left eye. His only medication use was 5% topical minoxidil foam for hair loss he started one week prior to symptom onset. Ophthalmic exam revealed a round elevation of parafoveal region of the left macula with OCT evidence of subretinal fluid and an inferior PED consistent with CSCR. Given recent initiation of topical minoxidil, we suspected that minoxidil may be inducing CSCR. Topical minoxidil was discontinued with recommended observation. There was complete resolution of CSCR at six week follow up. 
Conclusion: Subacute, unilateral central visual loss in an otherwise healthy 34-year-old male was found to be caused by minoxidil-induced CSCR. The correlation of topical minoxidil use one week prior to symptom onset with resolution of findings six weeks after discontinuing the medication suggests CSCR as a side effect of topical minoxidil. This case report suggests that short-term use of topical minoxidil, as short as one week, can induce CSCR. Our case shows that minoxidil-induced CSCR can be managed with medication discontinuation and observation.
DOI: 10.6084/m9.figshare.30217330.v1
title: Supplementary Material for: Short-term topical minoxidil use associated with acute central serous chorioretinopathy: A case report

description: Introduction: Minoxidil is a topical, over-the-counter, FDA-approved drug used to treat male and female pattern hair loss. Three case reports were published associating long term use of topical minoxidil to CSCR after four, six and eight months of use. In this report, we will present a case of CSCR after one week of topical minoxidil use that resolved with discontinuation of medication and observation six weeks later.
Case presentation: A 34-year-old Hispanic male presented with a two-week history of central visual loss and flashes in the left eye. His only medication use was 5% topical minoxidil foam for hair loss he started one week prior to symptom onset. Ophthalmic exam revealed a round elevation of parafoveal region of the left macula with OCT evidence of subretinal fluid and an inferior PED consistent with CSCR. Given recent initiation of topical minoxidil, we suspected that minoxidil may be inducing CSCR. Topical minoxidil was discontinued with recommended observation. There was complete resolution of CSCR at six week follow up. 
Conclusion: Subacute, unilateral central visual loss in an otherwise healthy 34-year-old male was found to be caused by minoxidil-induced CSCR. The correlation of topical minoxidil use one week prior to symptom onset with resolution of findings six weeks after discontinuing the medication suggests CSCR as a side effect of topical minoxidil. This case report suggests that short-term use of topical minoxidil, as short as one week, can induce CSCR. Our case shows that minoxidil-induced CSCR can be managed with medication discontinuation and observation.
DOI: 10.13140/rg.2.2.23638.92481
title: Historical mannequins: bust 40, waist 25. VIDEO
DOI: 10.6084/m9.figshare.30217333
title: Supplementary Material for: Compartment-specific NK cell phenotypes reveal distinct maturation and activation states in inflammatory arthritis

description: Introduction: Synovial natural-killer (NK) cells contribute to inflammation in arthritis by secreting cytokines and modulating synovial fibroblast activation. The aim of this study is to describe systemic versus local inflammatory changes of NK-cell-subsets as well as their physical cell-cell-interactions in arthritis patients. 
Methods: Spectral-flow-cytometry was used to compare paired peripheral blood (PB) and synovial fluid (SF) immune cells from patients with active inflammatory arthritis and healthy controls. Physical cell-cell-interactions within tissues were studied by applying a recently developed cellular-interaction-mapping framework. 
Results: Our paired approach revealed significant local enrichment of immature and activated NK-cells in SF, characterized by elevated markers of early differentiation, immune-checkpoint-regulation, and tissue-residency, highlighting tightly controlled immune activation at inflamed sites. Single-cell-analysis confirmed heterogeneity within SF-NK-cells, suggesting multiple co-existing activation states and developmental stages. PB-NK-cells from patients differed profoundly compared to healthy controls, showing less immature NK-cell subsets and an enrichment of mature, pro-inflammatory subsets indicative of systemic immune activation. Cellular-interaction-mapping revealed mainly NK/neutrophil-interactions of patients’ NK-cells, while interactions with B-cells, T-cells or monocytes were negligible. T-cells also displayed profound local and systemic alterations. Cellular-interaction-mapping revealed that next to NK-cell/neutrophil interactions, interactions between B-cells with monocytes and T-cells with neutrophils characterize joint inflammation.
Conclusion: This paired high-dimensional-analysis revealed systemic and local alterations in NK-cell-subsets shaped by co-existing developmental stages and immune regulatory mechanisms. Cellular-interaction-mapping indicated that neutrophils are a main interaction-partner of NK-cells in inflamed joints.
DOI: 10.6084/m9.figshare.30217333.v1
title: Supplementary Material for: Compartment-specific NK cell phenotypes reveal distinct maturation and activation states in inflammatory arthritis

description: Introduction: Synovial natural-killer (NK) cells contribute to inflammation in arthritis by secreting cytokines and modulating synovial fibroblast activation. The aim of this study is to describe systemic versus local inflammatory changes of NK-cell-subsets as well as their physical cell-cell-interactions in arthritis patients. 
Methods: Spectral-flow-cytometry was used to compare paired peripheral blood (PB) and synovial fluid (SF) immune cells from patients with active inflammatory arthritis and healthy controls. Physical cell-cell-interactions within tissues were studied by applying a recently developed cellular-interaction-mapping framework. 
Results: Our paired approach revealed significant local enrichment of immature and activated NK-cells in SF, characterized by elevated markers of early differentiation, immune-checkpoint-regulation, and tissue-residency, highlighting tightly controlled immune activation at inflamed sites. Single-cell-analysis confirmed heterogeneity within SF-NK-cells, suggesting multiple co-existing activation states and developmental stages. PB-NK-cells from patients differed profoundly compared to healthy controls, showing less immature NK-cell subsets and an enrichment of mature, pro-inflammatory subsets indicative of systemic immune activation. Cellular-interaction-mapping revealed mainly NK/neutrophil-interactions of patients’ NK-cells, while interactions with B-cells, T-cells or monocytes were negligible. T-cells also displayed profound local and systemic alterations. Cellular-interaction-mapping revealed that next to NK-cell/neutrophil interactions, interactions between B-cells with monocytes and T-cells with neutrophils characterize joint inflammation.
Conclusion: This paired high-dimensional-analysis revealed systemic and local alterations in NK-cell-subsets shaped by co-existing developmental stages and immune regulatory mechanisms. Cellular-interaction-mapping indicated that neutrophils are a main interaction-partner of NK-cells in inflamed joints.
DOI: 10.5281/zenodo.15798808
title: Mango pangenome reveals dramatic impacts of reference bias on population genomic analyses
DOI: 10.5281/zenodo.15798809
title: Mango pangenome reveals dramatic impacts of reference bias on population genomic analyses
DOI: 10.6084/m9.figshare.30217336
title: Supplementary Material for: Who are people with psychosis delusional about? A study of social agents in the phenomenology of delusions

description: Introduction: Delusions frequently involve strong beliefs about, or interactions with, illusory social agents. Although such agents have been systematically described in hallucinations, few studies have investigated their nature and identity in delusions.

Methods: We identified 205 electronic mental health records describing the content of delusions from the Clinical Record Interactive Search (CRIS) platform at South London and Maudsley NHS Foundation Trust. Delusional content was classified as non-social, implicitly social, or explicitly social. Descriptions of illusory social agents from explicitly social delusions were extracted and categorized using an upward coding analysis. A hierarchical cluster analysis identified distinct groupings of illusory social agents.

Results: Most delusions (83.4%) contained explicit references to illusory social agents. Across 238 instances, we identified 220 distinct agent identities, with a mean of 1.17 agents per record. The majority were humans (85.1%), most often identified as family members (31.0%), followed by acquaintances (17.2%), religious figures (13.2%), unnamed persons (12.8%), professionals (11.8%), and cultural figures (10.9%). Hierarchical clustering revealed two distinct groups: one including socially proximate agents and the other more socially distant agents. These findings indicate a social gradient in delusions.

Conclusion: Social content predominates in delusions, with patients experiencing delusions about socially closer individuals more frequently. We discuss the extent to which social gradient may not be unique to delusional misidentification syndromes but may instead represent a general feature of delusions. Better characterization of social agents in delusions could inform mechanistic accounts of these symptoms and, in clinical practice, guide family support and risk assessment.
DOI: 10.6084/m9.figshare.30217336.v1
title: Supplementary Material for: Who are people with psychosis delusional about? A study of social agents in the phenomenology of delusions

description: Introduction: Delusions frequently involve strong beliefs about, or interactions with, illusory social agents. Although such agents have been systematically described in hallucinations, few studies have investigated their nature and identity in delusions.

Methods: We identified 205 electronic mental health records describing the content of delusions from the Clinical Record Interactive Search (CRIS) platform at South London and Maudsley NHS Foundation Trust. Delusional content was classified as non-social, implicitly social, or explicitly social. Descriptions of illusory social agents from explicitly social delusions were extracted and categorized using an upward coding analysis. A hierarchical cluster analysis identified distinct groupings of illusory social agents.

Results: Most delusions (83.4%) contained explicit references to illusory social agents. Across 238 instances, we identified 220 distinct agent identities, with a mean of 1.17 agents per record. The majority were humans (85.1%), most often identified as family members (31.0%), followed by acquaintances (17.2%), religious figures (13.2%), unnamed persons (12.8%), professionals (11.8%), and cultural figures (10.9%). Hierarchical clustering revealed two distinct groups: one including socially proximate agents and the other more socially distant agents. These findings indicate a social gradient in delusions.

Conclusion: Social content predominates in delusions, with patients experiencing delusions about socially closer individuals more frequently. We discuss the extent to which social gradient may not be unique to delusional misidentification syndromes but may instead represent a general feature of delusions. Better characterization of social agents in delusions could inform mechanistic accounts of these symptoms and, in clinical practice, guide family support and risk assessment.
DOI: 10.15468/dl.65w6gm
title: Occurrence Download

description: A dataset containing 364 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron pulchrum"
 ]
}

 The dataset includes 364 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018577-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.