cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20331670.v1
title: Associations of discharge destination and length of stay in lower extremity free flap reconstruction

description: Patients with lower extremity defects requiring free flap reconstruction often have difficult postoperative courses with prolonged length of stay and need for transfer to a post-acute care facility. The primary aim of this study was to determine associations of preoperative and perioperative variables with length of stay and discharge destination in patients undergoing lower extremity free flap reconstruction. The secondary aim was to determine associations of various complications with their discharge destination. The 2011– 2017 NSQIP database was queried for CPT codes for free flap procedures and ICD-9/ICD-10 codes for lower extremities. Univariate and multivariate analyses were used to determine associations of preoperative and perioperative variables with length of stay and discharge destination in patients undergoing lower extremity free flap reconstruction and associations of complications with their discharge destination. A total of 420 patients were identified who underwent lower extremity reconstruction in 2011–2017. Of 79.8% were discharged home and 21.2% were discharged to destinations other than home. On multivariate analysis, female gender, age &gt; 55, ASA class &gt; 2 and dependent functional status were found to have independent associations with discharge to post-acute care facilities. ASA classification greater than 2, active smoking, and discharge to a post-acute care facility all were independently associated with prolonged length of stay. Increased length of stay and discharge to post-acute care facility are closely associated. Understanding variables that influence length of stay and need for discharge to post-acute care facilities can help identify patients that may be triaged through appropriate interventions and expectation management.
DOI: 10.6084/m9.figshare.22011287.v1
title: Data set.xlsx

description: The data set is the data obatined by the copropagating longitudinal acoustic wave experiment. Data include strain, strain rate， and the variation of nonlinear viscoelastic modulus in different trigger delay time of the experiment
DOI: 10.5281/zenodo.7662705
title: OpenD5

description: The OpenD5.pkl dataset.
DOI: 10.5281/zenodo.7662706
title: OpenD5

description: The OpenD5.pkl dataset.
DOI: 10.5281/zenodo.7683302
title: OpenD5

description: The OpenD5.pkl dataset.
DOI: 10.25345/c5vx06d0f
title: MassIVE MSV000091375 - EBV iPOND in cancer-causing Epstein-Barr virus infected cells
title: We describe how the cancer-causing Epstein-Barr virus (EBV), a prototypic herpesvirus, alters proteome at viral replication forks prominently identifies chromatin modifying and transcriptional repression proteins. Specifically, to transition from transcription, the viral DNA polymerase processivity factor EA-D is SUMOylated by the transcriptional corepressor KAP1-TRIM28. KAP1 function is triggered by phosphorylation via the PI3K-related kinase ATM and the helicase RECQ5 at the transcription machinery. SUMO-EA-D recruits the histone loader CAF1 and the methyltransferase SETDB1 to silence the parental genome, prioritizing replication. Thus, DNA repair, epigenetic, and transcription-replication interference pathways orchestrate the handover from transcription to replication, a fundamental feature of DNA viruses
DOI: 10.34740/kaggle/ds/2944328
title: World Earthquake Data From 1906-2022
DOI: 10.34740/kaggle/dsv/5077832
title: OntoUML/UFO Catalog
DOI: 10.6084/m9.figshare.7991276
title: Outcome measures & analyses scripts for "Corticomuscular control of walking in older people and people with Parkinson’s disease"

description: Time- and frequency domain, gait and clinical outcome measures during overground and treadmill walking in healthy young, healthy older and people with Parkinson's disease; input data into SPSS. Data were recorded via EEG from left and right sensorimotor cortices and EMG from left and right Tibialis Anterior muscles.<br>
DOI: 10.5281/zenodo.7332091
title: Integrative in situ mapping of single-cell transcriptional states and tissue histopathology in an Alzheimer disease model

description: Amyloid-β plaques and neurofibrillary tau tangles are the neuropathologic hallmarks of Alzheimer’s disease (AD), but the spatiotemporal cellular responses and molecular mechanisms underlying AD pathophysiology remain poorly understood. Here we introduce STARmap PLUS to simultaneously map single-cell transcriptional states and disease marker proteins in brain tissues of AD mouse models at a voxel size of 95  95  350 nm. This high-resolution spatial transcriptomics map revealed a core-shell structure where disease-associated microglia (DAM) closely contact amyloid-β plaques, whereas disease-associated astrocyte-like cells (DAA-like) and oligodendrocyte precursor cells (OPC) are enriched in the outer shells surrounding the plaque-DAM complex. Hyperphosphorylated tau emerged mainly in excitatory neurons in the CA1 region accompanied by infiltration of oligodendrocyte subtypes into the axon bundles of hippocampal alveus. The integrative STARmap PLUS method bridges single-cell gene expression profiles with tissue histopathology at subcellular resolution, providing an unprecedented roadmap to pinpoint the molecular and cellular mechanisms of AD pathology and neurodegeneration.
DOI: 10.5281/zenodo.7332090
title: Integrative in situ mapping of single-cell transcriptional states and tissue histopathology in an Alzheimer disease model

description: Amyloid-β plaques and neurofibrillary tau tangles are the neuropathologic hallmarks of Alzheimer’s disease (AD), but the spatiotemporal cellular responses and molecular mechanisms underlying AD pathophysiology remain poorly understood. Here we introduce STARmap PLUS to simultaneously map single-cell transcriptional states and disease marker proteins in brain tissues of AD mouse models at a voxel size of 95  95  350 nm. This high-resolution spatial transcriptomics map revealed a core-shell structure where disease-associated microglia (DAM) closely contact amyloid-β plaques, whereas disease-associated astrocyte-like cells (DAA-like) and oligodendrocyte precursor cells (OPC) are enriched in the outer shells surrounding the plaque-DAM complex. Hyperphosphorylated tau emerged mainly in excitatory neurons in the CA1 region accompanied by infiltration of oligodendrocyte subtypes into the axon bundles of hippocampal alveus. The integrative STARmap PLUS method bridges single-cell gene expression profiles with tissue histopathology at subcellular resolution, providing an unprecedented roadmap to pinpoint the molecular and cellular mechanisms of AD pathology and neurodegeneration.
DOI: 10.5281/zenodo.7683099
title: Integrative in situ mapping of single-cell transcriptional states and tissue histopathology in an Alzheimer disease model

description: Amyloid-β plaques and neurofibrillary tau tangles are the neuropathologic hallmarks of Alzheimer’s disease (AD), but the spatiotemporal cellular responses and molecular mechanisms underlying AD pathophysiology remain poorly understood. Here we introduce STARmap PLUS to simultaneously map single-cell transcriptional states and disease marker proteins in brain tissues of AD mouse models at a voxel size of 95  95  350 nm. This high-resolution spatial transcriptomics map revealed a core-shell structure where disease-associated microglia (DAM) closely contact amyloid-β plaques, whereas disease-associated astrocyte-like cells (DAA-like) and oligodendrocyte precursor cells (OPC) are enriched in the outer shells surrounding the plaque-DAM complex. Hyperphosphorylated tau emerged mainly in excitatory neurons in the CA1 region accompanied by infiltration of oligodendrocyte subtypes into the axon bundles of hippocampal alveus. The integrative STARmap PLUS method bridges single-cell gene expression profiles with tissue histopathology at subcellular resolution, providing an unprecedented roadmap to pinpoint the molecular and cellular mechanisms of AD pathology and neurodegeneration.
DOI: 10.5281/zenodo.6999041
title: MCMC samples of the posterior distribution from the paper "TESS spots a mini-neptune interior to a hot saturn in the TOI-2000 system"

description: This dataset contains the Hamiltonian Monte Carlo samples of the posterior distribution of the planetary and stellar parameters from the paper "TESS Spots a Mini-Neptune Interior to a Hot Saturn in the TOI-2000 System". The file format, NetCDF, is based on HDF5, and is meant to be read by the Python package ArviZ. Hot jupiters (<em>P</em> &lt; 10 d, <em>M</em> &gt; 60 M<sub>⊕</sub>) are almost always found alone around their stars, but four out of hundreds known have inner companion planets. These rare companions allow us to constrain the hot jupiter's formation history by ruling out high-eccentricity tidal migration. Less is known about inner companions to hot Saturn-mass planets. We report here the discovery of the TOI-2000 system, which features a hot Saturn-mass planet with a smaller inner companion. The mini-neptune TOI-2000 b (\(2.64^{+0.11}_{-0.12}\) R<sub>⊕</sub>, 10.3 ± 2.2 M<sub>⊕</sub>) is in a 3.10-day orbit, and the hot saturn TOI-2000 c (7.97 ± 0.12 R<sub>⊕</sub>, 75.7 ± 3.8 M<sub>⊕</sub>) is in a 9.13-day orbit. Both planets transit their host star TOI-2000 (TIC 371188886, <em>V</em> = 10.98, <em>TESS</em> magnitude = 10.36), a metal-rich ([Fe/H] = \(0.438^{+0.041}_{-0.042}\)) G dwarf 174 pc away. <em>TESS</em> observed the two planets in sectors 9–11 and 36–38, and we followed up with ground-based photometry, spectroscopy, and speckle imaging. Radial velocities from HARPS allowed us to confirm both planets by direct mass measurement. In addition, we demonstrate constraining planetary and stellar parameters with MIST stellar evolutionary tracks through Hamiltonian Monte Carlo under the PyMC framework, achieving higher sampling efficiency and shorter run time compared to traditional Markov chain Monte Carlo. Having the brightest host star in the <em>V</em> band among similar systems, TOI-2000 b and c are superb candidates for atmospheric characterization by the JWST, which can potentially distinguish whether they formed together or TOI-2000 c swept along material during migration to form TOI-2000 b.
DOI: 10.5281/zenodo.7683293
title: MCMC samples of the posterior distribution from the paper "TESS spots a mini-neptune interior to a hot saturn in the TOI-2000 system"

description: This dataset contains the Hamiltonian Monte Carlo samples of the posterior distribution of the planetary and stellar parameters from the paper "TESS Spots a Mini-Neptune Interior to a Hot Saturn in the TOI-2000 System". The file format, NetCDF, is based on HDF5, and is meant to be read by the Python package ArviZ. Hot jupiters (<em>P</em> &lt; 10 d, <em>M</em> &gt; 60 M<sub>⊕</sub>) are almost always found alone around their stars, but four out of hundreds known have inner companion planets. These rare companions allow us to constrain the hot jupiter's formation history by ruling out high-eccentricity tidal migration. Less is known about inner companions to hot Saturn-mass planets. We report here the discovery of the TOI-2000 system, which features a hot Saturn-mass planet with a smaller inner companion. The mini-neptune TOI-2000 b (2.70 ± 0.15 R<sub>⊕</sub>, 11.0 ± 2.4 M<sub>⊕</sub>) is in a 3.10-day orbit, and the hot saturn TOI-2000 c (\(8.14^{+0.31}_{-0.30}\) R<sub>⊕</sub>, \(81.7^{+4.7}_{-4.6}\) M<sub>⊕</sub>) is in a 9.13-day orbit. Both planets transit their host star TOI-2000 (TIC 371188886, <em>V</em> = 10.98, <em>TESS</em> magnitude = 10.36), a metal-rich ([Fe/H] = \(0.439^{+0.041}_{-0.043}\)) G dwarf 174 pc away. <em>TESS</em> observed the two planets in sectors 9–11 and 36–38, and we followed up with ground-based photometry, spectroscopy, and speckle imaging. Radial velocities from HARPS allowed us to confirm both planets by direct mass measurement. In addition, we demonstrate constraining planetary and stellar parameters with MIST stellar evolutionary tracks through Hamiltonian Monte Carlo under the PyMC framework, achieving higher sampling efficiency and shorter run time compared to traditional Markov chain Monte Carlo. Having the brightest host star in the <em>V</em> band among similar systems, TOI-2000 b and c are superb candidates for atmospheric characterization by the JWST, which can potentially distinguish whether they formed together or TOI-2000 c swept along material during migration to form TOI-2000 b.
DOI: 10.5281/zenodo.6999040
title: MCMC samples of the posterior distribution from the paper "TESS spots a mini-neptune interior to a hot saturn in the TOI-2000 system"

description: This dataset contains the Hamiltonian Monte Carlo samples of the posterior distribution of the planetary and stellar parameters from the paper "TESS Spots a Mini-Neptune Interior to a Hot Saturn in the TOI-2000 System". The file format, NetCDF, is based on HDF5, and is meant to be read by the Python package ArviZ. Hot jupiters (<em>P</em> &lt; 10 d, <em>M</em> &gt; 60 M<sub>⊕</sub>) are almost always found alone around their stars, but four out of hundreds known have inner companion planets. These rare companions allow us to constrain the hot jupiter's formation history by ruling out high-eccentricity tidal migration. Less is known about inner companions to hot Saturn-mass planets. We report here the discovery of the TOI-2000 system, which features a hot Saturn-mass planet with a smaller inner companion. The mini-neptune TOI-2000 b (2.70 ± 0.15 R<sub>⊕</sub>, 11.0 ± 2.4 M<sub>⊕</sub>) is in a 3.10-day orbit, and the hot saturn TOI-2000 c (\(8.14^{+0.31}_{-0.30}\) R<sub>⊕</sub>, \(81.7^{+4.7}_{-4.6}\) M<sub>⊕</sub>) is in a 9.13-day orbit. Both planets transit their host star TOI-2000 (TIC 371188886, <em>V</em> = 10.98, <em>TESS</em> magnitude = 10.36), a metal-rich ([Fe/H] = \(0.439^{+0.041}_{-0.043}\)) G dwarf 174 pc away. <em>TESS</em> observed the two planets in sectors 9–11 and 36–38, and we followed up with ground-based photometry, spectroscopy, and speckle imaging. Radial velocities from HARPS allowed us to confirm both planets by direct mass measurement. In addition, we demonstrate constraining planetary and stellar parameters with MIST stellar evolutionary tracks through Hamiltonian Monte Carlo under the PyMC framework, achieving higher sampling efficiency and shorter run time compared to traditional Markov chain Monte Carlo. Having the brightest host star in the <em>V</em> band among similar systems, TOI-2000 b and c are superb candidates for atmospheric characterization by the JWST, which can potentially distinguish whether they formed together or TOI-2000 c swept along material during migration to form TOI-2000 b.
DOI: 10.5281/zenodo.7683334
title: Virtual NGS data used in the paper "Optimal k-mer values for good-quality triploid genome assemblies" and its assembly results

description: Despite technological advancements, whole-genome sequencing remains technically challenging for organisms with higher-ploidy genomes. Therefore, the use of short-read sequencing platforms for this purpose has been attempted, but the conditions that result in poor-quality genomes have not been elucidated. Therefore, in the present study, simulated sequences mimicking the accumulation of insertion/deletion mutations were created to clarify the permissible differences between homologous chromosomes and the k-mer sizes for good-quality genome assembly from short-read sequencing data for triploid species. The results illustrated that a narrow range of k-mers permits the generation of high-quality assemblies for any level of difference between homologous chromosomes. <br> This dataset consists of the virtual haploid genome (O.fasta), triploid genome data (reference_sequense), NGS read data (NGS_reads), and assembly results (all_contigs) created in this study.<br>
DOI: 10.5281/zenodo.7683333
title: Virtual NGS data used in the paper "Optimal k-mer values for good-quality triploid genome assemblies" and its assembly results

description: Despite technological advancements, whole-genome sequencing remains technically challenging for organisms with higher-ploidy genomes. Therefore, the use of short-read sequencing platforms for this purpose has been attempted, but the conditions that result in poor-quality genomes have not been elucidated. Therefore, in the present study, simulated sequences mimicking the accumulation of insertion/deletion mutations were created to clarify the permissible differences between homologous chromosomes and the k-mer sizes for good-quality genome assembly from short-read sequencing data for triploid species. The results illustrated that a narrow range of k-mers permits the generation of high-quality assemblies for any level of difference between homologous chromosomes. <br> This dataset consists of the virtual haploid genome (O.fasta), triploid genome data (reference_sequense), NGS read data (NGS_reads), and assembly results (all_contigs) created in this study.<br>
DOI: 10.25959/1rxp-g309
title: Tasmanian Wilderness World Heritage Area (TWWHA) Bushfire Recovery: Lake Mackenzie Rehabilitation Trials Data - Sphagnum Restoration Trial

description: This record presents data from the 𝘚𝘱𝘩𝘢𝘨𝘯𝘶𝘮 rehabilitation trial, designed to test whether various combinations of fertiliser, shadecloth and 𝘚𝘱𝘩𝘢𝘨𝘯𝘶𝘮 transplants can promote recovery of the 𝘚𝘱𝘩𝘢𝘨𝘯𝘶𝘮 communities burnt in the 2016 fire. There were two facets to the 𝘚𝘱𝘩𝘢𝘨𝘯𝘶𝘮 restoration trials at Lake Mackenzie: (1) investigating the use of small unoccupied aerial systems (UAS) to identify moderately and severely damaged 𝘚𝘱𝘩𝘢𝘨𝘯𝘶𝘮, and (2) testing whether recovery of fire-damaged 𝘚𝘱𝘩𝘢𝘨𝘯𝘶𝘮 could be improved by applying shadecloth, fertiliser or transplanting healthy 𝘚𝘱𝘩𝘢𝘨𝘯𝘶𝘮. This dataset represents component (2) of this project.
DOI: 10.25959/hys9-cb16
title: Tasmanian Wilderness World Heritage Area (TWWHA) Bushfire Recovery: Lake Mackenzie Rehabilitation Trials Data - Pencil Pine mortality

description: The aim of this study was to evaluate the reliability of assessments of fire impacts on pencil pine populations made one year post-fire. In particular, we quantified delayed mortality occurring between one and four years post-fire, and attempted to determine whether the ultimate fate of stems could be predicted from measurements of canopy damage made one year post-fire. In addition, we quantified resprouting and juvenile presence four years after the fire. For full details, refer to Bliss 𝘦𝘵 𝘢𝘭 (2021).
DOI: 10.25959/sa6x-gd36
title: Tasmanian Wilderness World Heritage Area (TWWHA) Bushfire Recovery: Lake Mackenzie Rehabilitation Trials Data - Post-fire restoration of Pencil Pines

description: The primary goal of this trial was to identify best-practice methods (interventions) for restoring burnt pencil pine (𝘈𝘵𝘩𝘳𝘰𝘵𝘢𝘹𝘪𝘴 𝘤𝘶𝘱𝘳𝘦𝘴𝘴𝘰𝘪𝘥𝘦𝘴) stands. We selected five study sites in the Lake Mackenzie area. We sought to develop methods to rehabilitate burnt Pencil Pine stands (not create new stands) and hence targeted areas with fire-killed Pencil Pines. We selected three sites burnt in the 2016 fires (Burnt sites henceforth) and two which were not burnt in 2016, but contained dead Pencil Pines from the 1960’s fires (Unburnt sites henceforth). We chose sites which were relatively accessible and which captured environmental variability. Sites did not have formal boundaries or fixed size; they were simply a tool to achieve geographic spread.
DOI: 10.25442/hku.21997580
title: Supporting Data For "Quantity Display Optimization in Online Grocery Retailing: How Visual Aids of Quantity Presentation Increase Preference for Larger-Quantity Packs over Smaller-Quantity Packs"

description: Online retailing platforms are adopting various practices to present quantities of grocery items on the webpages where consumers make quantity-based purchase decisions. The current research identifies a solution based on visual aids—supplementing the numerical information with a corresponding number of visual icons—to promote product packs containing more individual units. Thirteen preregistered, incentive-compatible studies (<em>N</em> = 6,388) demonstrate that our proposed solution of visual aids of quantity presentation shifts consumers’ preferences from smaller-quantity packs toward larger-quantity packs, compared to the numerical presentation of quantity. This research extends the literature by demonstrating that visual aids can even influence perceptions of easy-to-assess quantities and generates novel managerial insights into the optimization of quantity presentation practice on online grocery shopping.
DOI: 10.25442/hku.21997580.v2
title: Supporting Data For "Quantity Display Optimization in Online Grocery Retailing: How Visual Aids of Quantity Presentation Increase Preference for Larger-Quantity Packs over Smaller-Quantity Packs"

description: Online retailing platforms are adopting various practices to present quantities of grocery items on the webpages where consumers make quantity-based purchase decisions. The current research identifies a solution based on visual aids—supplementing the numerical information with a corresponding number of visual icons—to promote product packs containing more individual units. Thirteen preregistered, incentive-compatible studies (<em>N</em> = 6,388) demonstrate that our proposed solution of visual aids of quantity presentation shifts consumers’ preferences from smaller-quantity packs toward larger-quantity packs, compared to the numerical presentation of quantity. This research extends the literature by demonstrating that visual aids can even influence perceptions of easy-to-assess quantities and generates novel managerial insights into the optimization of quantity presentation practice on online grocery shopping.
DOI: 10.25442/hku.21997580.v1
title: Supporting Data For "Visual Influences on Quantity Perception on Online Grocery Retailing"

description: Online retailing platforms are adopting various practices to present quantities of grocery items on the webpages where consumers make quantity-based purchase decisions. <br> The current research identifies a solution based on visual aids—supplementing the numerical information with a corresponding number of visual icons—to promote product packs containing more individual units. Thirteen preregistered, incentive-compatible studies (<em>N</em> = 6,388) demonstrate that our proposed solution of visual aids of quantity presentation shifts consumers’ preferences from smaller-quantity packs toward larger-quantity packs, compared to the numerical presentation of quantity. <br> This research extends the literature by demonstrating that visual aids can even influence perceptions of easy-to-assess quantities and generates novel managerial insights into the optimization of quantity presentation practice on online grocery shopping.
DOI: 10.6084/m9.figshare.22178573
title: DataS1.zip

description: R code files include the min-linear logistic regression model which we incorporated a minimum structure in logistic regression to account for the von Liebig’s Law of Minimum and the analysis. Data files are the Asiatic black bear (<em>Ursus thibetanus</em>) distribution data (presence/absence) which we extracted from Liu et al. (2009) and layers of environmental predictors.
DOI: 10.6084/m9.figshare.22178573.v1
title: DataS1.zip

description: R code files include the min-linear logistic regression model which we incorporated a minimum structure in logistic regression to account for the von Liebig’s Law of Minimum and the analysis. Data files are the Asiatic black bear (<em>Ursus thibetanus</em>) distribution data (presence/absence) which we extracted from Liu et al. (2009) and layers of environmental predictors.
DOI: 10.5281/zenodo.7682978
title: TTV Constraints on Additional Planets in the WD 1856+534 system - Files

description: Fit files of each of the parameter slices