cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24043332
title: Gene sequences for the 9,530 MAGs in the 953-species dataset

description: This dataset contains the gene sequences for the 9,530 MAGs used in the paper "Using lossless compression algorithms to improve metagenomics binning and accelerate genome taxonomic classification" by Meir et al., 2024.MAGs in this dataset were collected from these studies:Pasolli E, Asnicar F, Manara S, Zolfo M, Karcher N, Armanini F, et al. Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle. Cell. 2019 Jan 24;176(3):649-662.e20.Almeida A, Nayfach S, Boland M, Strozzi F, Beracochea M, Shi ZJ, et al. A unified sequence catalogue of over 200,000 genomes obtained from the human gut microbiome. Nature Biotechnology. 2021 Jan; 39(1):105-114Forster SC, Kumar N, Anonye BO, Almeida A, Viciani E, Stares MD, et al. A human gut bacterial genome and culture collection for improved metagenomic analyses. Nature Biotechnology. 2019 Feb 04; 37(2) 186-192
DOI: 10.6084/m9.figshare.24043332.v1
title: Gene sequences for the 9,530 MAGs in the 953-species dataset

description: This dataset contains the gene sequences for the 9,530 MAGs used in the paper "Using lossless compression algorithms to improve metagenomics binning and accelerate genome taxonomic classification" by Meir et al., 2024.MAGs in this dataset were collected from these studies:Pasolli E, Asnicar F, Manara S, Zolfo M, Karcher N, Armanini F, et al. Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle. Cell. 2019 Jan 24;176(3):649-662.e20.Almeida A, Nayfach S, Boland M, Strozzi F, Beracochea M, Shi ZJ, et al. A unified sequence catalogue of over 200,000 genomes obtained from the human gut microbiome. Nature Biotechnology. 2021 Jan; 39(1):105-114Forster SC, Kumar N, Anonye BO, Almeida A, Viciani E, Stares MD, et al. A human gut bacterial genome and culture collection for improved metagenomic analyses. Nature Biotechnology. 2019 Feb 04; 37(2) 186-192
DOI: 10.15468/dl.fkb839
title: Occurrence Download

description: A dataset containing 71953 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "TaxonKey is one of (Calophyllum L., Kayea Wall., Kielmeyera Mart., Mammea L., Poeciloneuron Bedd., Mesua L., Caraipa Aubl.)"
 ]
}

 The dataset includes 71953 records from 714 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003790-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k3z96v
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saussurea velutina W.W.Sm."
 ]
}

 The dataset includes 94 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003794-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ymvyjn
title: Occurrence Download

description: A dataset containing 732 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ephedra gerardiana Wall. ex Klotzsch & Garcke"
 ]
}

 The dataset includes 732 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003793-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sb7dnw
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphanizomenon manguinii Bourr."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003795-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d698my
title: Occurrence Download

description: A dataset containing 939 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saussurea gnaphalodes (Royle ex DC.) Sch.Bip."
 ]
}

 The dataset includes 939 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003797-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fyva6a
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodiola smithii (Raym.-Hamet) S.H.Fu"
 ]
}

 The dataset includes 120 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003796-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jgzv82
title: Occurrence Download

description: A dataset containing 548 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodiola fastigiata (Hook.fil. & Thomson) S.H.Fu"
 ]
}

 The dataset includes 548 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003799-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mx3ssf
title: Occurrence Download

description: A dataset containing 306 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithobates sierramadrensis (Taylor, 1939)"
 ]
}

 The dataset includes 306 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003770-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4xb5az
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodiola sacra (Raym.-Hamet) S.H.Fu"
 ]
}

 The dataset includes 115 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003801-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q6z42b
title: Occurrence Download

description: A dataset containing 564 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Megadontomys cryophilus (Musser, 1964)"
 ]
}

 The dataset includes 564 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003800-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26300842.v1
title: Skeletal muscle reprogramming enhances reinnervation after peripheral nerve injury

description: Peripheral Nerve Injuries (PNI) affect more than 20 million Americans and severely impact quality of life by causing long-term disability. The onset of PNI is characterized by nerve degeneration distal to the nerve injury resulting in long periods of skeletal muscle denervation. During this period, muscle fibers atrophy and frequently become incapable of “accepting” innervation because of the slow speed of axon regeneration post injury. We hypothesize that reprogramming the skeletal muscle to an embryonic-like state may preserve its reinnervation capability following PNI. To this end, we generated a mouse model in which NANOG, a pluripotency-associated transcription factor can be expressed locally upon delivery of doxycycline (Dox) in a polymeric vehicle. NANOG expression in the muscle upregulated the percentage of Pax7+ nuclei and expression of eMYHC along with other genes that are involved in muscle development. In a sciatic nerve transection model, NANOG expression led to upregulation of key genes associated with myogenesis, neurogenesis and neuromuscular junction (NMJ) formation. Further, NANOG mice demonstrated extensive overlap between synaptic vesicles and NMJ acetylcholine receptors (AChRs) indicating restored innervation. Indeed, NANOG mice showed greater improvement in motor function as compared to wild-type (WT) animals, as evidenced by improved toe-spread reflex, EMG responses and isometric force production. In conclusion, we demonstrate that reprogramming the muscle can be an effective strategy to improve reinnervation and functional outcomes after PNI.
DOI: 10.6084/m9.figshare.26300842
title: Skeletal muscle reprogramming enhances reinnervation after peripheral nerve injury

description: Peripheral Nerve Injuries (PNI) affect more than 20 million Americans and severely impact quality of life by causing long-term disability. The onset of PNI is characterized by nerve degeneration distal to the nerve injury resulting in long periods of skeletal muscle denervation. During this period, muscle fibers atrophy and frequently become incapable of “accepting” innervation because of the slow speed of axon regeneration post injury. We hypothesize that reprogramming the skeletal muscle to an embryonic-like state may preserve its reinnervation capability following PNI. To this end, we generated a mouse model in which NANOG, a pluripotency-associated transcription factor can be expressed locally upon delivery of doxycycline (Dox) in a polymeric vehicle. NANOG expression in the muscle upregulated the percentage of Pax7+ nuclei and expression of eMYHC along with other genes that are involved in muscle development. In a sciatic nerve transection model, NANOG expression led to upregulation of key genes associated with myogenesis, neurogenesis and neuromuscular junction (NMJ) formation. Further, NANOG mice demonstrated extensive overlap between synaptic vesicles and NMJ acetylcholine receptors (AChRs) indicating restored innervation. Indeed, NANOG mice showed greater improvement in motor function as compared to wild-type (WT) animals, as evidenced by improved toe-spread reflex, EMG responses and isometric force production. In conclusion, we demonstrate that reprogramming the muscle can be an effective strategy to improve reinnervation and functional outcomes after PNI.
DOI: 10.15468/dl.ybgken
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphanizomenon skujae Komárk.-Legn. & Cronberg"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003802-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27195678
title: Chiral Plasmonic-Dielectric Coupling Enables Strong Near-Infrared Chiroptical Responses from Helicoidal Core-Shell Nanoparticles

description: The data represents the chiroptical properties of chiral nanomaterials.
DOI: 10.6084/m9.figshare.27195678.v1
title: Chiral Plasmonic-Dielectric Coupling Enables Strong Near-Infrared Chiroptical Responses from Helicoidal Core-Shell Nanoparticles

description: The data represents the chiroptical properties of chiral nanomaterials.
DOI: 10.6084/m9.figshare.25928314
title: Viscoelastic synthetic antigen-presenting cells for augmenting the potency of cancer therapies

description: Source Data Fig. 6
Source Data Fig. 7
DOI: 10.6084/m9.figshare.25928314.v1
title: Viscoelastic synthetic antigen-presenting cells for augmenting the potency of cancer therapies

description: Source Data Fig. 6
Source Data Fig. 7
DOI: 10.6084/m9.figshare.26150950
title: Noninvasive in vivo photoacoustic detection of malaria with Cytophone in Cameroon

description: Included in the zip file are:
- Cytophone_Data_Viewer_v6.4.exe to plot data
- An example data set (An in vitro hemozoin sample showing many peaks over a stable background)
- Installation Instructions.txt
- Using Cytophone Data Viewer App.docx (A short description of the program, including figures)
DOI: 10.6084/m9.figshare.26150950.v1
title: Noninvasive in vivo photoacoustic detection of malaria with Cytophone in Cameroon

description: Included in the zip file are:
- Cytophone_Data_Viewer_v6.4.exe to plot data
- An example data set (An in vitro hemozoin sample showing many peaks over a stable background)
- Installation Instructions.txt
- Using Cytophone Data Viewer App.docx (A short description of the program, including figures)
DOI: 10.15468/dl.25ymxp
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphanizomenon yezoense M.Watan."
 ]
}

 The dataset includes 36 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003803-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x3nvdf
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphanocapsa annulata G.B.McGregor"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003804-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.puxqtz
title: Occurrence Download

description: A dataset containing 704 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodiola bupleuroides (Wall. ex Hook.fil. & Thomson) S.H.Fu"
 ]
}

 The dataset includes 704 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003805-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.njqbqm
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhodiola atsaensis (Fröd.) H.Ohba"
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003806-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27308829.v1
title: Supplementary Material for: Stroke is Not an Accident: An Integrative Review on the Use of the Term ‘Cerebrovascular Accident’

description: Background: Cerebrovascular accident (CVA) is an outdated term for describing stroke as it implies stroke is an accident. We conducted an integrative review to determine use of CVA in terms of 1) frequency in major medical journals over time; 2) associated publication characteristics (e.g., number of authors, senior author country, topic); and 3) frequency in medical records. 
Methods: We searched Google Scholar for publications in leading neurology and vascular journals (Quartile 1) across two 5-year periods (1998-2002 and 2018-2022) using the terms “cerebrovascular accident” or “CVA.” Two reviewers independently reviewed full-text publications and recorded the frequency of CVA use. Rates of use (per 1,000 articles/year) were calculated for each journal and time period. Associations of publication characteristics with CVA use were determined using multivariable logistic regression models. In addition, admission and discharge forms in the Auckland Regional Community Stroke Study (ARCOS V) were audited for frequency of use of the term CVA. 
Results: Of the 1,643 publications retrieved, 1,539 were reviewed in full. Of these, CVA was used ≥1 time in 676 publications, and ≥2 times in 276 publications (129 in 1998-2002; 147 in 2018-2022). The terms CVA and stroke both appeared in 57% of publications where CVA was used ≥2 times in 1998-2002, compared to 65% in 2018-2022. Majority of publications were on the topic of stroke (22% in 1998-2002; 20% in 2018-2022). There were no associations between publication characteristics and the use of CVA. The highest rate of CVA use in 2018-2022 was in Circulation, and increased over time from 1.3 uses per 1,000 publications in 1998-2002 to 1.8 uses per 1,000 publications in 2018-2022. The largest reduction the use of CVA was in Neuroepidemiology (2.0 uses per 1,000 publications in 1998-2002 to 0 uses in 2018-2022). The term CVA was identified in 0.2% of stroke admission and discharge forms audited (17/7808). 
Conclusion: We found evidence of changes in the use of CVA in the scientific literature over the past two decades. Editors, authors and clinicians should avoid the use of the term CVA as it perpetuates the use of a non-specific, non-diagnostic, and non-scientific term.
DOI: 10.15468/dl.3ak9jd
title: Occurrence Download

description: A dataset containing 661 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphanocapsa conferta (West & G.S.West) Komárk.-Legn. & Cronberg"
 ]
}

 The dataset includes 661 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003807-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8j8msw
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aliterella atlantica J.Rigonato et al."
 ]
}

 The dataset includes 52 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003808-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27308634
title: Information for the 9,530 MAGs in the 953-species dataset

description: This file contains information for the 9,530 MAGs used in the paper "Using lossless compression algorithms to improve metagenomics binning and accelerate genome taxonomic classification"
DOI: 10.6084/m9.figshare.27308634.v1
title: Information for the 9,530 MAGs in the 953-species dataset

description: This file contains information for the 9,530 MAGs used in the paper "Using lossless compression algorithms to improve metagenomics binning and accelerate genome taxonomic classification"
DOI: 10.15468/dl.fwm5bg
title: Occurrence Download

description: A dataset containing 3626 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptodactylus mystacinus (Burmeister, 1861)"
 ]
}

 The dataset includes 3626 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003809-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5ve9e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphanocapsa cumulus Komárek & Cronberg"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003810-241024112534372/datasets/export for details.
DOI: 10.15468/dl.7xeq5p
title: Occurrence Download

description: A dataset containing 6130902 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-79.86567 43.3929, -79.10823 43.3929, -79.10823 44.02373, -79.86567 44.02373, -79.86567 43.3929))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 6130902 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003779-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j978vb
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aliterella vladivostokensis Sh.R.Abdullin, A.Yu.Nikulin, V.B.Bagmet & V.Yu.Nikulin, 2021"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003811-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jj7dp9
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Androsace zambalensis (Petitm.) Hand.-Mazz."
 ]
}

 The dataset includes 133 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003813-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ve6vac
title: Occurrence Download

description: A dataset containing 2766 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphanocapsa delicatissima W.West & G.S.West"
 ]
}

 The dataset includes 2766 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003812-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eq8hse
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alkalinema pantanalense Vieira Vaz et al."
 ]
}

 The dataset includes 126 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003814-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u87jfr
title: Occurrence Download

description: A dataset containing 444 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rheum spiciforme Royle"
 ]
}

 The dataset includes 444 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003815-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8kwfpb
title: Occurrence Download

description: A dataset containing 317 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphanocapsa elachista Yamagishi"
 ]
}

 The dataset includes 317 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003817-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m6dawz
title: Occurrence Download

description: A dataset containing 4971 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptodactylus fragilis (Brocchi, 1877)"
 ]
}

 The dataset includes 4971 records from 224 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003816-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.