cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3633014_d7.v1
title: Additional file 10: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: FPs associated with non-coding genes. FPs within 1Â kb upstream of the indicated non-coding genes are noted. The distance of the FP from the TSS of each gene is indicated. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 163Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d5.v1
title: Additional file 5: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: FPs mapping to 3â   UTRs. FPs mapping to the 3â   UTRs of the indicated genes are noted. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d6.v1
title: Additional file 6: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: Intragenic FPs. The number of intragenic FPs located within various genes is noted. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 243Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d4.v1
title: Additional file 8: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: FPs mapping to introns. Genes with intronic FPs and FP positions within introns are noted. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d3.v1
title: Additional file 7: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: FPs mapping to exons. Genes with exonic FPs and the FP positions within exons are noted. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d2.v1
title: Additional file 11: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: Moyo-S vs. Moyo-R SNPs mapping to FPs. Moyo-S vs. Moyo-R SNPs at the indicated positions mapped to the FPs. The supercontig location of each SNP and corresponding FP ID numbers are indicated. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 181Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d1.v1
title: Additional file 9: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: FPs mapping to intron-exon boundaries. The intron-exon boundary locations of FPs in the indicated genes are noted. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 174Â kb)
DOI: 10.15468/dl.7hkfku
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zeus nebulosus Temminck & Schlegel, 1845",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035633-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3632819_d3.v1
title: Additional file 1: Table S1. of Genomic survey sequencing for development and validation of single-locus SSR markers in peanut (Arachis hypogaea L.)

description: Details of the identified in silico 134,652 single-locus SSR markers, which were determined based on the de novo genome assembly sequences of A. hypogaea. The table includes the SSR loci in the assembly sequences, the expected SSR size, the SSR type, primer and motif information. (XLSX 17082Â kb)
DOI: 10.6084/m9.figshare.c.3632813_d4.v1
title: MOESM2 of Targeting LAMP2 in human cerebrospinal fluid with a combination of immunopurification and high resolution parallel reaction monitoring mass spectrometry

description: Additional file 2: Table S2. Identified peptides following IP of LAMP2 in human CSF.
DOI: 10.6084/m9.figshare.c.3632819_d1.v1
title: Additional file 2: Table S2. of Genomic survey sequencing for development and validation of single-locus SSR markers in peanut (Arachis hypogaea L.)

description: The synthesized 1,790 developed single-locus SSR markers and their amplified situation. (XLSX 121Â kb)
DOI: 10.6084/m9.figshare.c.3632813_d2.v1
title: MOESM1 of Targeting LAMP2 in human cerebrospinal fluid with a combination of immunopurification and high resolution parallel reaction monitoring mass spectrometry

description: Additional file 1: Table S1. Identified proteins following IP of LAMP2 in human CSF.
DOI: 10.6084/m9.figshare.c.3632813_d1.v1
title: MOESM4 of Targeting LAMP2 in human cerebrospinal fluid with a combination of immunopurification and high resolution parallel reaction monitoring mass spectrometry

description: Additional file 4: Table S3. Quantitative data produced by the HR-PRM-MS method and raw-data processing.
DOI: 10.6084/m9.figshare.c.3632783_d1.v1
title: Additional file 2: Table S1. of Small RNA and degradome profiling reveals miRNA regulation in the seed germination of ancient eudicot Nelumbo nucifera

description: Detailed information of the known miRNAs identified in sacred lotus during seed germination. Table S2. Detailed information of the novel miRNAs identified from sacred lotus during seed germination. Table S3. The expression level of all known miRNAs of the germinating seeds at 0 h, 12 h, 24 h, 36 h and 72 h. Table S4. The significantly differential expression level of the known miRNAs of the germinating seeds at 12 h, 24 h, 36 h and 72 h in comparison with 0 h. Table S5. The targets of known miRNA identified in sacred lotus during the seed germination. Table S6. The targets of novel miRNA predicted in sacred lotus during the seed germination. Table S7. GO enrichment analysis for all the target genes. Table S8. KEGG pathway enrichment analysis for the targets of differentially expressed miRNAs. Table S9. The common and specific miRNA editing in sacred lotus during the seed germination. Table S10. Primers of miRNAs and targets in sacred lotus for qRT-PCR and miRNA editing in this study. (XLSX 203 kb)
DOI: 10.6084/m9.figshare.c.3632582_d1.v1
title: Additional file 1: of Abnormal plasma DNA profiles in early ovarian cancer using a non-invasive prenatal testing platform: implications for cancer screening

description: CNVs &gt;15 Mb in the Western Australia Biospecimen Bank Dataset, CNVs reported in an ovarian cancer genome atlas, and coordinates of overlapping regions. (XLS 52 kb)
DOI: 10.6084/m9.figshare.c.3632552_d2.v1
title: Additional file 5: of Integrating transcriptomics and metabolomics to characterise the response of Astragalus membranaceus Bge. var. mongolicus (Bge.) to progressive drought stress

description: Table S4. Raw metabolomics data under different stages of drought stress (nâ  =â  8). (CSV 13 kb)
DOI: 10.6084/m9.figshare.c.3632528_d8.v1
title: Additional file 10: of Identification and comprehensive analyses of the CBL and CIPK gene families in wheat (Triticum aestivum L.)

description: Probes and selected microarray data in expression analysis. (XLS 66Â kb)
DOI: 10.6084/m9.figshare.c.3632516_d5.v1
title: Additional file 5: of RNAi-mediated down-regulation of the expression of OsFAD2-1: effect on lipid accumulation and expression of lipid biosynthetic genes in the rice grain

description: Gene expression (RPKM) values of affected genes in Lipid biosynthesis pathway. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3632516_d6.v1
title: Additional file 1: of RNAi-mediated down-regulation of the expression of OsFAD2-1: effect on lipid accumulation and expression of lipid biosynthetic genes in the rice grain

description: Amounts and fatty acid profiles of various lipids in Fad2 silenced rice. (XLSX 31Â kb)
DOI: 10.15468/dl.xszjjt
title: Occurrence Download

description: A dataset containing 927 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sebastiscus marmoratus (Cuvier, 1829)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 927 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035634-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3632336_d8.v1
title: Additional file 1: of Quantitative trait loci analysis and genome-wide comparison for silique related traits in Brassica napus

description: Mean value and phenotypic variation of the seven silique traits of KN population in 3/4 microenvironments. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3632342_d4.v1
title: Additional file 7:  of RNA-seq for gene identification and transcript profiling in relation to root growth of bermudagrass (Cynodon dactylon) under salinity stress

description: Selected cell wall related DEGs. (XLS 25 kb)
DOI: 10.6084/m9.figshare.c.3632342_d3.v1
title: Additional file 4:  of RNA-seq for gene identification and transcript profiling in relation to root growth of bermudagrass (Cynodon dactylon) under salinity stress

description: Differentially expressed genes in two genotypes of bermudagrass. (XLS 1612 kb)
DOI: 10.6084/m9.figshare.c.3632342_d2.v1
title: Additional file 1:  of RNA-seq for gene identification and transcript profiling in relation to root growth of bermudagrass (Cynodon dactylon) under salinity stress

description: GO_classification. (XLS 10826 kb)
DOI: 10.6084/m9.figshare.c.3632342_d1.v1
title: Additional file 2:  of RNA-seq for gene identification and transcript profiling in relation to root growth of bermudagrass (Cynodon dactylon) under salinity stress

description: KOG_classification. (XLS 270 kb)
DOI: 10.6084/m9.figshare.c.3632336_d5.v1
title: Additional file 3: of Quantitative trait loci analysis and genome-wide comparison for silique related traits in Brassica napus

description: Detailed information of identified and consensus QTLs associated with the seven silique traits in the KN population. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.c.3632336_d3.v1
title: Additional file 5: of Quantitative trait loci analysis and genome-wide comparison for silique related traits in Brassica napus

description: Detailed information of unique QTLs associated with the seven silique traits in KN population. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.c.3632336_d4.v1
title: Additional file 8: of Quantitative trait loci analysis and genome-wide comparison for silique related traits in Brassica napus

description: Thirty-four QTLs obtained from the five chosen maps were aligned onto the consensus map. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3632336_d2.v1
title: Additional file 11: of Quantitative trait loci analysis and genome-wide comparison for silique related traits in Brassica napus

description: Function of the 25 candidate genes. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3632336_d1.v1
title: Additional file 10: of Quantitative trait loci analysis and genome-wide comparison for silique related traits in Brassica napus

description: Comparative mapping results between Arabidopsis and B. napus. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3632255_d1.v1
title: Additional file 2 of Protein complex detection based on partially shared multi-view clustering

description: Functional enrichment of the predicted protein complexes. We provide the functional enrichment analysis results of the complexes predicted by PSMVC with respect to the three individual subontology (BP, MF, CC) in this section. (XLSX 187 kb)
DOI: 10.15468/dl.2jhwww
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sebastes marmoratus Cuvier, 1829",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035635-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3632150_d1.v1
title: Additional file 3: of Role of plant MicroRNA in cross-species regulatory networks of humans

description: The technical details and p-values to describe the enrichment of GO terms for Arabidopsis. (XLS 109 kb)
DOI: 10.6084/m9.figshare.c.3632048_d2.v1
title: Additional file 2: Table S1. of Systematic identification of Ctr9 regulome in ERα-positive breast cancer

description: Identification of ERα and Ctr9 targets by analyzing the ChIP-seq and microarray data sets. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3631874_d1.v1
title: MOESM7 of Genomic and secretomic insight into lignocellulolytic system of an endophytic bacterium Pantoea ananatis Sd-1

description: Additional file 7: Table S3. Primers used for quantitative real-time PCR in this study.xlsx.
DOI: 10.6084/m9.figshare.c.3631856_d2.v1
title: Additional file 2: Figures S1–S6. of Integrative genomic analysis reveals functional diversification of APOBEC gene family in breast cancer

description: Figure S1. Expression profiles of APOBEC family genes in breast tumor tissues and adjacent normal tissues in relation to ER status. Figure S2. Comparison of chromatin states in APOBEC1 (A), APOBEC2 (B), APOBEC4 (C), and AICDA (D) genes in ER+ (MCF-7), ER− (HCC1954) breast cancer cells, and normal cells (HMEC). Chromatin states characterized by the ChromHMM algorithm are represented by different colors shown in the bottom. Figure S3. Kaplan-Meier curve for overall survival of four patient groups with higher (top 50 %) or lower (bottom 50 %) expression of APOBEC3B and APOBEC3C genes in breast cancer. Figure S4. Distribution of the number of somatic mutations (A) and C&gt;T/G&gt;A mutations (B) per tumor exome. The red curve is a kernel density estimate. Figure S5. Relationship between mRNA levels of APOBEC3B (upper panel) and APOBEC3C (lower panel) and number of somatic SNVs per tumor exome stratified by the ER status. The black lines and red curves are drawn from the linear regression model and local regression smoothing, respectively. Figure S6. Expression profiles of APOBEC family genes in breast tumor tissues in relation with copy numbers of APOBEC3B. (ZIP 559 kb)
DOI: 10.6084/m9.figshare.c.3631850_d1.v1
title: Additional file 2: of Evidence and knowledge gaps on the disease burden in sexual and gender minorities: a review of systematic reviews

description: Summary table of review of systematic reviews. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3631856_d1.v1
title: Additional file 1: of Integrative genomic analysis reveals functional diversification of APOBEC gene family in breast cancer

description: Tables S1 and S2. Table S1. Data characteristics in this study. Table S2. Expression levels of APOBEC family genes across ten breast cell lines. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3631817_d3.v1
title: Additional file 2: Table S1. of Heterogeneity in global gene expression profiles between biopsy specimens taken peri-surgically from primary ER-positive breast carcinomas

description: Demographics for study I and study II. Table S2. Correlation of paired expression levels in 13 genes reported in breast cancer (complementing TableÂ 1). Table S3. A) Canonical pathways and B) top networks identified in study I. Table S4. Genes correlated with time elapsed in study I. Table S5. Top pathways identified from 116 genes correlated with time elapsed. Table S6. Top networks identified from 116 genes correlated with time elapsed. Table S7. Intrinsic subtype concordance between pairs. Table S8. Top pathways identified in study II. Table S9. Top networks identified in study II. Table S10. Top 20 genes identified in study I and their p value in study II. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3631766_d9.v1
title: Additional file 3: Figure S2. of TRAPLINE: a standardized and automated pipeline for RNA sequencing data analysis, evaluation and annotation

description: Visualization for RNA transcript quality control and comparison of per base quality score Q. The images are taken before (A) and after (B) quality trimming procedure (removes reads with Q â ¤ 20) to estimate the effect of trimming. The quality score Q is plotted to the read position by using the FastQC package in Galaxy (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/). The color indicates the quality of the read: "red" low quality, "orange" median quality, "green" good quality. Red line expresses the mean of the measured values (yellow boxes are inter-quartile range) and the blue line represents the mean quality. (ZIP 81 kb)
DOI: 10.15468/dl.rg42yf
title: Occurrence Download

description: A dataset containing 291 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.33005 10.81029,-75.34658 10.77234,-75.39482 10.66157,-74.97025 10.15785,-74.73998 10.30657,-74.55289 10.80309,-74.83833 11.17488,-75.33005 10.81029))",
 "OccurrenceStatus is Present",
 "TaxonKey is Diptera"
 ]
}

 The dataset includes 291 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035636-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3631544_d2.v1
title: Additional file 3: of Estimation of tulathromycin depletion in plasma and milk after subcutaneous injection in lactating goats using a nonlinear mixed-effects pharmacokinetic modeling approach

description: All plasma tulathromycin and milk CP-60,300 concentration data used in the model simulation. (XLSX 84 kb)
DOI: 10.15468/dl.93yjbn
title: Occurrence Download

description: A dataset containing 532 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Portunus trituberculatus (Miers, 1876)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 532 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035637-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3631490_d1.v1
title: Additional file 3: Table S1. of Formation of diploid and triploid hybrid groupers (hybridization of Epinephelus coioides ♀ × Epinephelus lanceolatus ♂) and their 5S gene analysis

description: Embryo development records of the groupers. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3631472_d1.v1
title: Additional file 1: Table S1. of Low-molecular-weight-heparin can benefit women with recurrent pregnancy loss and sole protein S deficiency: a historical control cohort study from Taiwan

description: Details of the 47 livebirths (resulting in 48 live-birth babies from 46 singletons and 1 twin pregnancy) from 37 patients prescribed low molecular weight heparin low molecular weight heparin. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3631340_d8.v1
title: Additional file 6: of Identification of alternative splicing events by RNA sequencing in early growth tomato fruits

description: Novel protein sequences. Protein sequences of unique NTR transcripts. Deduced protein sequences of the 137 putative protein coding sequences from NTRs that share no homology with any protein sequences in NCBI database. (TXT 20Â kb)
DOI: 10.6084/m9.figshare.c.3631235_d1.v1
title: Additional file 2: Table S1. of Risk estimates of mortality attributed to low concentrations of ambient fine particulate matter in the Canadian community health survey cohort

description: Comparison of all variables (Pearson's correlation or ANOVA/T-Test). (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3631226_d2.v1
title: Additional file 1: of Changes in enterovirus serotype constituent ratios altered the clinical features of infected children in Guangdong Province, China, from 2010 to 2013

description: Sequence data of non-EV71/CVA16 enterovirus isolated from HFMD/HA inpatients admitted to Zhujiang hospital between 2010 to 2013. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3631226_d1.v1
title: Additional file 2: of Changes in enterovirus serotype constituent ratios altered the clinical features of infected children in Guangdong Province, China, from 2010 to 2013

description: Demographical and clinical information of HFMD/HA patients admitted to Zhujiang hospital between 2010-2013. (XLS 4462Â kb)
DOI: 10.6084/m9.figshare.c.3631175_d11.v1
title: Additional file 12: Table S8. of Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit

description: KEGG annotation of up and down regulated unigenes by DEGs. (XLS 1411 kb)
DOI: 10.6084/m9.figshare.c.3631175_d12.v1
title: Additional file 11: Table S7. of Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit

description: GO annotation of up and down regulated unigenes by DEGs. (XLS 54 kb)
DOI: 10.6084/m9.figshare.c.3631175_d10.v1
title: Additional file 8: Table S5. of Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit

description: Distribution and expression patterns of key enzymes involved in lipid metabolism. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3631175_d7.v1
title: Additional file 6: Table S4. of Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit

description: Distribution of unigenes assigned into KEGG public database. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3631175_d8.v1
title: Additional file 13: Table S9. of Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit

description: The designed primers of the key enzymes involved in lipid metabolism for qRT-PCR. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3631175_d5.v1
title: Additional file 10: Table S6. of Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit

description: FPKM comparison of up and down regulated unigenes by DEGs. (XLS 5071 kb)
DOI: 10.6084/m9.figshare.c.3631175_d6.v1
title: Additional file 4: Table S2. of Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit

description: Distribution of unigenes assigned into GO public database. (XLS 31 kb)
DOI: 10.6084/m9.figshare.c.3631175_d4.v1
title: Additional file 5: Table S3. of Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit

description: Distribution of unigenes assigned into COG public database. (XLS 21 kb)
DOI: 10.6084/m9.figshare.c.3631175_d1.v1
title: Additional file 3: Table S1. of Transcriptome analysis revealed the dynamic oil accumulation in Symplocos paniculata fruit

description: The distribution of sequencing reads in each library. (XLSX 9 kb)
DOI: 10.15468/dl.q7tt3t
title: Occurrence Download

description: A dataset containing 6876 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Spodoptera litura (Fabricius, 1775)"
 ]
}

 The dataset includes 6876 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035638-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvd46r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leucobacter triazinivorans",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035639-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3630887_d3.v1
title: Additional file 1: Table S1. of Derivation of chicken induced pluripotent stem cells tolerant to Newcastle disease virus-induced lysis through multiple rounds of infection

description: List of differentially expressed genes between BA3NI-I0 and BA3NI-I6 (average of biological triplicates). (XLSX 57 kb)