cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18457294
title: Impact of Cover Crops on Carbon Sequestration, GHG Emissions, and Soil Health in Mediterranean fruit tree orchards (CLIMCOVER Project)

description: This dataset presents the comprehensive results of a two-year research initiative conducted within the framework of the CLIMCOVER project, focusing on sustainable intensification in modern fruit tree cultivation. The study specifically evaluates the transition from traditional bare soil management to the use of cover crops, with the primary objective of quantifying the benefits of this agroecological practice regarding soil health, climate change mitigation, and ecosystem multifunctionality. By integrating agronomic, physicochemical, and high-throughput molecular indicators, the data facilitates a comparative evaluation of cultivation systems. The dataset includes detailed site metadata and environmental characterization—providing coordinates, climatic variables (temperature, precipitation, and evapotranspiration), and topographical features—alongside in-depth documentation of agricultural management practices, such as tillage, fertilization, and irrigation, all contextualized through specific case study codification.

A significant portion of this research is dedicated to selecting and evaluating the effect of cover crops on Carbon (C) sequestration and the reduction of Greenhouse Gas (GHG) emissions. To ensure high-precision data for climate change mitigation and C farming markets, soil profiles were opened in each plot to identify horizons and sample for inorganic and total organic C. This allows for a robust comparison of soil carbon storage across the entire depth between long-term cover crop implementation and traditional monoculture profiles. Furthermore, direct emissions of CO2, CH4, and N2O were measured monthly over one year using the dynamic gas chamber technique connected to a photoacoustic infrared spectroscopy multi-gas analyzer. These measurements, captured every minute for 5-minute periods to assess linear trends, provide a real-world assessment of how cover crop management affects GHG emissions.

To complement soil and gas data, the study incorporates tree biomass assessments by uprooting trees at the beginning and end of the experiment to measure C content in roots, trunks, stems, and leaves. C sequestration in cover crops was similarly assessed through early summer quadrant sampling (1 m2). All carbon analysis for soil and biomass was performed using an elemental CHNS-O analyzer (EA-1108, Carlo Erba). Overall, this dataset provides a holistic view of carbon cycling and storage, bridging the gap between potential and real GHG emissions within modern orchard ecosystems.
DOI: 10.5281/zenodo.18457293
title: Impact of Cover Crops on Carbon Sequestration, GHG Emissions, and Soil Health in Mediterranean fruit tree orchards (CLIMCOVER Project)

description: This dataset presents the comprehensive results of a two-year research initiative conducted within the framework of the CLIMCOVER project, focusing on sustainable intensification in modern fruit tree cultivation. The study specifically evaluates the transition from traditional bare soil management to the use of cover crops, with the primary objective of quantifying the benefits of this agroecological practice regarding soil health, climate change mitigation, and ecosystem multifunctionality. By integrating agronomic, physicochemical, and high-throughput molecular indicators, the data facilitates a comparative evaluation of cultivation systems. The dataset includes detailed site metadata and environmental characterization—providing coordinates, climatic variables (temperature, precipitation, and evapotranspiration), and topographical features—alongside in-depth documentation of agricultural management practices, such as tillage, fertilization, and irrigation, all contextualized through specific case study codification.

A significant portion of this research is dedicated to selecting and evaluating the effect of cover crops on Carbon (C) sequestration and the reduction of Greenhouse Gas (GHG) emissions. To ensure high-precision data for climate change mitigation and C farming markets, soil profiles were opened in each plot to identify horizons and sample for inorganic and total organic C. This allows for a robust comparison of soil carbon storage across the entire depth between long-term cover crop implementation and traditional monoculture profiles. Furthermore, direct emissions of CO2, CH4, and N2O were measured monthly over one year using the dynamic gas chamber technique connected to a photoacoustic infrared spectroscopy multi-gas analyzer. These measurements, captured every minute for 5-minute periods to assess linear trends, provide a real-world assessment of how cover crop management affects GHG emissions.

To complement soil and gas data, the study incorporates tree biomass assessments by uprooting trees at the beginning and end of the experiment to measure C content in roots, trunks, stems, and leaves. C sequestration in cover crops was similarly assessed through early summer quadrant sampling (1 m2). All carbon analysis for soil and biomass was performed using an elemental CHNS-O analyzer (EA-1108, Carlo Erba). Overall, this dataset provides a holistic view of carbon cycling and storage, bridging the gap between potential and real GHG emissions within modern orchard ecosystems.
DOI: 10.15468/dl.2zzqbs
title: Occurrence Download

description: A dataset containing 231612 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Uca leptodactyla",
 "TaxonKey is Uca minax",
 "TaxonKey is Uca mordax",
 "TaxonKey is Uca pugnax",
 "TaxonKey is Uca rapax",
 "TaxonKey is Uca thayeri",
 "TaxonKey is Undinula vulgaris",
 "TaxonKey is Uromastyx aegyptia",
 "TaxonKey is Uta mearnsi",
 "TaxonKey is Uta stansburiana",
 "TaxonKey is Vampyroteuthis infernalis",
 "TaxonKey is Varanus bengalensis",
 "TaxonKey is Varanus exanthematicus",
 "TaxonKey is Varanus giganteus",
 "TaxonKey is Varanus gouldii",
 "TaxonKey is Varanus panoptes",
 "TaxonKey is Vitrea contracta",
 "TaxonKey is Vitrina pellucida",
 "TaxonKey is Waldeckia obesa",
 "TaxonKey is Xantho hydrophilus",
 "TaxonKey is Xantusia henshawi",
 "TaxonKey is Xantusia vigilis",
 "TaxonKey is Xiphophorus hellerii",
 "TaxonKey is Zebrina detrita"
 ]
 },
 "HasCoordinate is true"
 ]
}

 The dataset includes 231612 records from 867 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007507-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17939917
title: General Healthcare Access Deprivation Modelled Dataset in Pasto, Colombia

description: Produced as part of the IDEAMAPS Data Ecosystem project, this dataset maps the degree of access deprivation to General Healthcare. It is a spatial representation of how communities can reach, choose and use the general healthcare services offered by public facilities. Areas with higher levels of access deprivation are associated with greater difficulties in accessing general healthcare.
DOI: 10.5281/zenodo.17939916
title: General Healthcare Access Deprivation Modelled Dataset in Pasto, Colombia

description: Produced as part of the IDEAMAPS Data Ecosystem project, this dataset maps the degree of access deprivation to General Healthcare. It is a spatial representation of how communities can reach, choose and use the general healthcare services offered by public facilities. Areas with higher levels of access deprivation are associated with greater difficulties in accessing general healthcare.
DOI: 10.15468/dl.9pdkh7
title: Occurrence Download

description: A dataset containing 1447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arctostaphylos alpinus, Arctous alpina)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 1447 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007445-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jhpj7h
title: Occurrence Download

description: A dataset containing 15077 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arenaria serpyllifolia, Arenaria serpyllifolia, Arenaria serpyllifolia, Arenaria serpyllifolia)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 15077 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007447-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.brehv5
title: Occurrence Download

description: A dataset containing 308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Armeria alpina, Armeria alpina, Armeria alpina, Armeria alpina, Armeria alpina, Armeria alpina, Armeria alpina, Armeria alpina)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 308 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007449-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18460139
title: Estimating economy-wide mineral commodity consumption using hybrid input-output modeling: a case study of fluorspar

description: This dataset includes the physical supply and use tables and the mixed-unit direct requirements matrix developed for the publication: Estimating economy-wide mineral commodity consumption using hybrid input-output modeling: a case study of fluorspar.
DOI: 10.15468/dl.qj8d97
title: Occurrence Download

description: A dataset containing 11258591 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Italy",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 11258591 records from 1697 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007356-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.2025
title: Data from: The importance of competition for food and nest-sites in aggressive behaviour of Collared Flycatcher Ficedula albicollis

description: Capsule: Using an experimental approach, this study disentangles effects
 of two important sources on the elicitation of aggressive interspecific
 behaviour. Aims: Although interspecific competition for nest sites is
 broadly assumed to be an example of interference, there are no
 experimental studies supporting this idea. Here the importance of
 competition for nest sites and food for the elicitation of aggressive
 behaviour of a secondary cavity-nesting bird are investigated. Methods:
 The Collared Flycatcher’s Ficedula albicollis responses to mounts of the
 Great Tit Parus major (nest site and food competitor), Chaffinch Fringilla
 coelebs (food competitor) and Dunnock Prunella modularis (control species)
 were tested. Trials were performed near flycatchers’ nests during nest
 building, incubation and care of nestlings. Results: The intensity of dive
 attacks and frequency of contact attacks showed that the aggression of
 Collared Flycatchers decreased in the direction: Great Tit &gt;
 Chaffinch &gt; Dunnock. The difference in aggressiveness was greater
 between Great Tit and Chaffinch than between Chaffinch and Dunnock.
 Aggression directed toward Great Tits increased from the nest building to
 the incubation stage and then decreased markedly in the nestling stage.
 Males were more aggressive than females. Conclusion: These results suggest
 that competition for nest sites, and to a lesser extent for food, may be
 of an interference nature and that the reproductive value hypothesis can
 only partly explain differences in the Collared Flycatcher’s defensive
 behaviour found between sexes and stages of the breeding cycle.
description: dataset
DOI: 10.5061/dryad.1rq8f
title: Data from: Hybrid dysgenesis in Drosophila simulans associated with a rapid invasion of the P-element

description: In a classic example of the invasion of a species by a selfish genetic
 element, the P-element was horizontally transferred from a distantly
 related species into Drosophila melanogaster. Despite causing ‘hybrid
 dysgenesis’, a syndrome of abnormal phenotypes that include sterility, the
 P-element spread globally in the course of a few decades in D.
 melanogaster. Until recently, its sister species, including D. simulans,
 remained P-element free. Here, we find a hybrid dysgenesis-like phenotype
 in the offspring of crosses between D. simulans strains collected in
 different years; a survey of 181 strains shows that around 20% of strains
 induce hybrid dysgenesis. Using genomic and transcriptomic data, we show
 that this dysgenesis-inducing phenotype is associated with the invasion of
 the P-element. To characterize this invasion temporally and
 geographically, we survey 631 D. simulans strains collected on three
 continents and over 27 years for the presence of the P-element. We find
 that the D. simulans P-element invasion occurred rapidly and nearly
 simultaneously in the regions surveyed, with strains containing P-elements
 being rare in 2006 and common by 2014. Importantly, as evidenced by their
 resistance to the hybrid dysgenesis phenotype, strains collected from the
 latter phase of this invasion have adapted to suppress the worst effects
 of the P-element.
description: Pelement_cross_genotype_datasee READMEdata_dryad3-1.xlsx
DOI: 10.5061/dryad.54p68
title: Data from: Transcript levels of major interleukins in relation to the clinicopathological profile of patients with tuberculous intervertebral discs and healthy controls

description: Objectives: The purpose of the present study was to simultaneously examine
 the transcript levels of a large number of interleukins (ILs; IL-9, IL-10,
 IL-12, IL-13, IL-16, IL-17, IL-18, IL-26, and IL-27) and investigate their
 correlation with the clinicopathological profiles of patients with
 tuberculous intervertebral discs. Methods: Clinical data were collected
 from 150 patients participating in the study from January 2013 to December
 2013. mRNA expression levels in 70 tuberculous, 70 herniated, and 10
 control intervertebral disc specimens were determined by real-time
 polymerase chain reaction. Results: IL-10, IL-16, IL-17, IL-18, and IL-27
 displayed stronger expression in tuberculous spinal disc tissue than in
 normal intervertebral disc tissue (P&lt;0.05). Our results illustrated
 multiple correlations among IL-10, IL-16, IL-17, IL-18, and IL-27 mRNA
 expression in tuberculous samples. Smoking habits were found to have a
 positive correlation with IL-17 transcript levels and a negative
 correlation with IL-10 transcript levels (P&lt;0.05). Pain intensity,
 symptom duration, C-reactive protein levels, and the erythrocyte
 sedimentation rate exhibited multiple correlations with the transcript
 levels of several ILs (P&lt;0.05). Conclusions: The experimental data
 imply a double-sided effect on the activity of ILs in tuberculous spinal
 intervertebral discs, suggesting that they may be involved in
 intervertebral discs destruction. Our findings also suggest that smoking
 may affect the intervertebral discs destruction process of spinal
 tuberculosis. However, further studies are necessary to elucidate the
 exact role of ILs in the intervertebral discs destruction process of
 spinal tuberculosis.
description: The data file contains
 information of 150 samples of Ct value in ILs.
DOI: 10.15468/dl.zspbsv
title: Occurrence Download

description: A dataset containing 1647 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jaltomata procumbens",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1647 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000936-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.p502g
title: Data from: Local habitat condition rather than geographic distance determines the genetic structure of Tamarix chinensis populations in Yellow River Delta, China

description: Understanding the extent of genetic diversity in natural populations and
 the correlations between population structure and environmental
 heterogeneity is of great importance to estimation of the potential for
 species to undergo rapid adaptive changes in response to environmental
 variation. In this study, we systematically sampled 800 individuals from
 26 Tamarix chinensis populations distributed throughout the Yellow River
 Delta (YRD) region in China, where a mosaic of habitat patches varying in
 soil salinity was detected. By exploring the micro-geographic genetic
 structure using the co-dominant microsatellite (SSR) markers, we aimed to
 answer questions as to what extent the populations diverged and how
 habitat heterogeneity affected the local population structure and dynamics
 of T. chinensis in YRD. The results demonstrated a moderate high level of
 genetic diversity and a low level of genetic differentiation in T.
 chinensis populations. The genetic variation was mainly maintained within
 populations, with a weak but significant genetic differentiation being
 detected among populations (Fst = 0.053, P &lt; 0.001). While the
 overall genetic diversity within populations decreased progressively along
 with the increasing soil salinity, the locus T1D12 exhibited an elevated
 variation among populations, with the allele 558 (T1D12) showing a
 significantly higher frequency in highly saline habitats than in other
 sites, suggesting that the ecological differences among patchy habitats
 led to weak but significant adaptive divergence among populations. Local
 habitat conditions rather than geographic distances determine the genetic
 structure of T. chinensis populations in YRD.
description: Genetic structure of
 Tamarix chinensis populations in Yellow River Delta,
 ChinaSSRData
 for Dryad.xlsx
DOI: 10.5061/dryad.12s8s
title: Data from: Evolutionary metabolomics reveals domestication-associated changes in tetraploid wheat kernels

description: Domestication and breeding have influenced the genetic structure of plant
 populations due to selection for adaptation from natural habitats to
 agro-ecosystems. Here, we investigate the effects of selection on the
 contents of 51 primary kernel metabolites and their relationships in three
 Triticum turgidum L. subspecies (i.e., wild emmer, emmer, durum wheat)
 that represent the major steps of tetraploid wheat domestication. We
 present a methodological pipeline to identify the signature of selection
 for molecular phenotypic traits (e.g., metabolites and transcripts).
 Following the approach, we show that a reduction in unsaturated fatty
 acids was associated with selection during domestication of emmer (primary
 domestication). We also show that changes in the amino acid content due to
 selection mark the domestication of durum wheat (secondary domestication).
 These effects were found to be partially independent of the associations
 that unsaturated fatty acids and amino acids have with other
 domestication-related kernel traits. Changes in contents of metabolites
 were also highlighted by alterations in the metabolic correlation
 networks, indicating wide metabolic restructuring due to domestication.
 Finally, evidence is provided that wild and exotic germplasm can have a
 relevant role for improvement of wheat quality and nutritional traits.
description: evolutionary
 metabolomics dataContent of 51 polar and
 non-polar primary metabolites from 37 genotypes of Triticum turgidum L.
 including wild emmer, emmer and durum wheatevolutionary
 metabolomics_data.xlsx
DOI: 10.5061/dryad.4622g
title: Data from: Plasmid carriage can limit bacteria-phage coevolution

description: Coevolution with bacteriophages is a major selective force shaping
 bacterial populations and communities. A variety of both environmental and
 genetic factors has been shown to influence the mode and tempo of
 bacteria–phage coevolution. Here, we test the effects that carriage of a
 large conjugative plasmid, pQBR103, had on antagonistic coevolution
 between the bacterium Pseudomonas fluorescens and its phage, SBW25ϕ2.
 Plasmid carriage limited bacteria–phage coevolution; bacteria evolved
 lower phage-resistance and phages evolved lower infectivity in
 plasmid-carrying compared with plasmid-free populations. These differences
 were not explained by effects of plasmid carriage on the costs of phage
 resistance mutations. Surprisingly, in the presence of phages, plasmid
 carriage resulted in the evolution of high frequencies of mucoid bacterial
 colonies. Mucoidy can provide weak partial resistance against SBW25ϕ2,
 which may have limited selection for qualitative resistance mutations in
 our experiments. Taken together, our results suggest that plasmids can
 have evolutionary consequences for bacteria that go beyond the direct
 phenotypic effects of their accessory gene cargo.
description: DYNAMICSDynamics of populations through time. Every 4 transfers populations were measured for bacterial and phage density, colony morphology and plasmid prevalence. Treatments comprise plasmid and phage free (F), phage free, plasmid containing (P), plasmid free and phage containing (FP), plasmid and phage containing (P).RBGInfection/resistance estimates as 'Reduction in Bacterial Growth' (RBG) for 20 clones isolated from each of the phage containing populations at transfer 20. Each clone was estimated against each of the 12 phage populations. The morphology and plasmid status (0, plasmid free or 1, plasmid containing) of each clone is also included. Treatments are identified as plasmid free (FP) and plasmid containing (PP).GROWTH RATESGrowth rates of the ancestral starting strain with and without the plasmid in the presence and absence of mercury (hg).RESISTANCE MUTSFitness of resistance mutants relative to a marked reference strain in 0 and 8 µM of HgCl2 with and without the plasmid. Mutants A1-4 were derived from challenge with the ancestral phage while mutants E1-5 were challenged with evolved phages. WT denotes the wild type, susceptible strain.
DOI: 10.15468/dl.rdufsm
title: Occurrence Download

description: A dataset containing 1977 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((79.74996 5.71946,82.35135 6.20415,81.38969 9.44655,79.66494 9.84124,79.74996 5.71946))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Batrachostomus moniliger",
 "Year 2016-2026"
 ]
}

 The dataset includes 1977 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000937-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.