cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21239/v9h02k
title: Datos de Granulometría Proyecto: Atención a eventuales emergencias ambientales en la zona marino-costera del departamento del Magdalena

description: Datos granulometricos de las playas de Santa Marta, a partir de muestras recolectadas a 3 profundidades en cada estació. Se hicieron 33 mediciones en cuatro campañas, ver distribucion espacial de estas estaciones en: http://siam.invemar.org.co/sibm-campanas-proyectos Los datos se organizan en las siguientes tablas: GRANULOMETRÍA (GRAMOS) GRANULOMETRÍA (PORCENTAJE) Metodo Folk & Ward Metodo Folk & Ward Description Para determinar los perfiles de las playas se utilizó la metodología propuesta por Emery (1961), que consiste en realizar mediciones topográficas, determinado de forma indirecta las distancias horizontales y desniveles de la playa a través de una estación topográfica TOPCON GPT7505. Se ubicaron con DGPS los puntos de referencia en tierra sobre el cual se niveló la estación topográfica TOPCON GPT7505 y se orientó con respecto al norte; posteriormente esta se giró 180° (vista al mar) buscando la visual de un prisma, anclado a una altura entre 1,60 m y 2,80 m previamente ubicado por una persona a cierta distancia y hasta una profundidad máxima de 1,5 m en agua; a partir de esta posición, se iniciaron las lecturas con desplazamientos en línea recta a intervalos de distancias de 5 m hacia la estación y marcando los cambios topográficos encontrados como la pendiente, escarpes, dunas, bermas de playa y en la zona submareal barras, terrazas y calanes según las características de cada perfil. Por último, se procedió con la descarga y procesamiento de los datos, los cuales fueron exportados en formato XLS para la representación y análisis de los perfiles de playa. Creative Commons BY, NC, 4.0
DOI: 10.7795/720.20220111
title: Dataset for the publication "A Ti/Pt/Co Multilayer Stack for Transfer Function Based Magnetic Force Microscopy Calibrations summary"

description: Magnetic force microscopy (MFM) is a widespread technique for imaging magnetic structures with a resolution of some 10 nanometers. MFM can be calibrated to obtain quantitative (qMFM) spatially resolved magnetization data in units of A/m by determining the calibrated point spread function of the instrument, its instrument calibration function (ICF), from a measurement of a well-known reference sample. Beyond quantifying the MFM data, a deconvolution of the MFM image data with the ICF also corrects the smearing caused by the finite width of the MFM tip stray field distribution. However, the quality of the calibration depends critically on the calculability of the magnetization distribution of the reference sample. Here, we discuss a Ti/Pt/Co multilayer stack that shows a stripe domain pattern as a suitable reference material. A precise control of the fabrication process, combined with a characterization of the sample micromagnetic parameters, allows reliable calculation of the sample’s magnetic stray field, proven by a very good agreement between micromagnetic simulations and qMFM measurements. A calibrated qMFM measurement using the Ti/Pt/Co stack as a reference sample is shown and validated, and the application area for quantitative MFM measurements calibrated with the Ti/Pt/Co stack is discussed.
description: EMPIR projects are co-funded by the European Union’s (EU) Horizon 2020 research and innovation programme and the EMPIR participating states.
DOI: 10.3886/e147963v1
title: Data and code for "Can you move to Opportunity? Evidence from the Great Migration"

description: This paper shows that racial composition shocks during the Great Migration (1940-1970) reduced the gains from growing up in the northern United States for Black families and can explain 27% of the region’s racial upward mobility gap today. I identify northern Black share increases by interacting pre-1940 Black migrants’ location choices with predicted southern county out-migration. Locational changes, not negative selection of families, explain lower upward mobility, with persistent segregation and increased crime and policing as plausible mechanisms. The case of the Great Migration provides a more nuanced view of moving to opportunity when destination reactions are taken into account.<br><br>
description: non-southern US counties and commuting zones<br>. Smallest Geographic Unit: commuting zones, counties
DOI: 10.5281/zenodo.5906144
title: tomato tissue transcriptome -9

description: tomato tissue transcriptome
DOI: 10.5281/zenodo.5906143
title: tomato tissue transcriptome -9

description: tomato tissue transcriptome
DOI: 10.17045/sthlmuni.16573364
title: Fluid Intransitivity in Old Finnish

description: A striking feature of the Finnish language is that a subset of clause subjects behave in various ways like objects. For example, they may be marked with the partitive case in negated clauses, which "normal" subjects never do in Finnish, but objects always do. The subset of subjects in question are those of existential clauses (which broadly correspond to English "there..." clauses, e.g. "there is a book on the table") and possessive clauses (which are similar to existential clauses in Finnish: Finnish does not have a "to have"-verb, and the sentence "I have a book" is expressed like "at me is a book").<br>In the linked paper, I study whether this phenomenon (which is known as "fluid intransitivity" in recent typological literature) is present in the older Finnish language of the 16th and 17th century. I also want to see whether, if there is variation between subject-like and object-like subjects in clauses that correspond to modern Finnish existential and possessive clauses, I can determine which individual factors (such as, for example, negation) promote subject-like or object-like marking.<br>For this purpose, I gathered a database of relevant clauses from two key Old Finnish texts: Agricola's 1548 New Testament translation, and the New Testament section of the 1642 first Finnish Bible (Biblia). I used the electronic versions published by the Institute for the Languages of Finland. <br><br>The relevant clauses in question are clauses which have an intransitive main verb and an indefinite subject NP. I could not select for existential/possessive clauses in a more direct manner as it is precisely in question whether there is an existential clause type in Old Finnish. The resulting corpus (899 clauses from Agricola, 959 clauses from the Biblia) broadly covers the equivalent of modern Finnish existential clauses.<br>These clauses were then coded for variables studied (agreement and case-marking) as well as for several factor groups which I postulate may have affected the variables. The resulting code was then subject to a statistical analysis using the Goldvarb computer program. This analysis included a multivariate analysis which assigned a specific "weight" to individual factor groups.<br><br>For further clarification of methodology, etc. I refer to the linked paper. The file "coding instructions.txt" includes a brief explanation of the codes used in the database. The four spreadsheet files both include raw data (the clauses in question) and coding of variables and factor groups.<br>NOTE: The data files have undergone slight corrections and therefore differ slightly from those underlying <br>the 2016 paper.<br>
DOI: 10.17045/sthlmuni.16573364.v1
title: Fluid Intransitivity in Old Finnish

description: A striking feature of the Finnish language is that a subset of clause subjects behave in various ways like objects. For example, they may be marked with the partitive case in negated clauses, which "normal" subjects never do in Finnish, but objects always do. The subset of subjects in question are those of existential clauses (which broadly correspond to English "there..." clauses, e.g. "there is a book on the table") and possessive clauses (which are similar to existential clauses in Finnish: Finnish does not have a "to have"-verb, and the sentence "I have a book" is expressed like "at me is a book").<br>In the linked paper, I study whether this phenomenon (which is known as "fluid intransitivity" in recent typological literature) is present in the older Finnish language of the 16th and 17th century. I also want to see whether, if there is variation between subject-like and object-like subjects in clauses that correspond to modern Finnish existential and possessive clauses, I can determine which individual factors (such as, for example, negation) promote subject-like or object-like marking.<br>For this purpose, I gathered a database of relevant clauses from two key Old Finnish texts: Agricola's 1548 New Testament translation, and the New Testament section of the 1642 first Finnish Bible (Biblia). I used the electronic versions published by the Institute for the Languages of Finland. <br><br>The relevant clauses in question are clauses which have an intransitive main verb and an indefinite subject NP. I could not select for existential/possessive clauses in a more direct manner as it is precisely in question whether there is an existential clause type in Old Finnish. The resulting corpus (899 clauses from Agricola, 959 clauses from the Biblia) broadly covers the equivalent of modern Finnish existential clauses.<br>These clauses were then coded for variables studied (agreement and case-marking) as well as for several factor groups which I postulate may have affected the variables. The resulting code was then subject to a statistical analysis using the Goldvarb computer program. This analysis included a multivariate analysis which assigned a specific "weight" to individual factor groups.<br><br>For further clarification of methodology, etc. I refer to the linked paper. The file "coding instructions.txt" includes a brief explanation of the codes used in the database. The four spreadsheet files both include raw data (the clauses in question) and coding of variables and factor groups.<br>NOTE: The data files have undergone slight corrections and therefore differ slightly from those underlying <br>the 2016 paper.<br>
DOI: 10.5281/zenodo.5906879
title: Subcutaneous, Paracardiac, and Epicardial Fat CT Density Before/After Contrast Injection: Any Correlation with CAD?

description: Dataset from Monti CB, Capra D, Malavazos A, Florini G, Parietti C, Schiaffino S, Sardanelli F, Secchi F. Subcutaneous, Paracardiac, and Epicardial Fat CT Density Before/After Contrast Injection: Any Correlation with CAD? J Clin Med. 2021 Feb 12;10(4):735. doi: 10.3390/jcm10040735. PMID: 33673256; PMCID: PMC7918165. Abstract Adipose tissue, in particular epicardial adipose tissue, has been identified as a potential biomarker of cardiovascular pathologies such as coronary artery disease (CAD) in the light of its metabolic activity and close anatomic and pathophysiologic relationship to the heart. Our purpose was to evaluate epicardial adipose tissue density at both unenhanced and contrast-enhanced computed tomography (CT), along with CT densities of paracardiac and subcutaneous adipose tissue, as well as the relations of such densities with CAD. We retrospectively reviewed patients who underwent cardiac CT at our institution for CAD assessment. We segmented regions of interest on epicardial, paracardiac, and subcutaneous adipose tissue on unenhanced and contrast-enhanced scans. A total of 480 patients were included, 164 of them presenting with CAD. Median epicardial adipose tissue density measured on contrast-enhanced scans (-81.5 HU; interquartile range -84.9 to -78.0) was higher than that measured on unenhanced scans (-73.4 HU; -76.9 to -69.4) (<em>p</em> &lt; 0.001), whereas paracardiac and subcutaneous adipose tissue densities were not (<em>p</em> ≥ 0.055). Patients with or without CAD, did not show significant differences in density of epicardial, paracardiac, and subcutaneous adipose tissue either on unenhanced or contrast-enhanced scans (<em>p</em> ≥ 0.092). CAD patients may experience different phenomena (inflammation, fibrosis, increase in adipose depots) leading to rises or drops in epicardial adipose tissue density, resulting in variations that are difficult to detect.
DOI: 10.5281/zenodo.5906877
title: Subcutaneous, Paracardiac, and Epicardial Fat CT Density Before/After Contrast Injection: Any Correlation with CAD?

description: Dataset from Monti CB, Capra D, Malavazos A, Florini G, Parietti C, Schiaffino S, Sardanelli F, Secchi F. Subcutaneous, Paracardiac, and Epicardial Fat CT Density Before/After Contrast Injection: Any Correlation with CAD? J Clin Med. 2021 Feb 12;10(4):735. doi: 10.3390/jcm10040735. PMID: 33673256; PMCID: PMC7918165. Abstract Adipose tissue, in particular epicardial adipose tissue, has been identified as a potential biomarker of cardiovascular pathologies such as coronary artery disease (CAD) in the light of its metabolic activity and close anatomic and pathophysiologic relationship to the heart. Our purpose was to evaluate epicardial adipose tissue density at both unenhanced and contrast-enhanced computed tomography (CT), along with CT densities of paracardiac and subcutaneous adipose tissue, as well as the relations of such densities with CAD. We retrospectively reviewed patients who underwent cardiac CT at our institution for CAD assessment. We segmented regions of interest on epicardial, paracardiac, and subcutaneous adipose tissue on unenhanced and contrast-enhanced scans. A total of 480 patients were included, 164 of them presenting with CAD. Median epicardial adipose tissue density measured on contrast-enhanced scans (-81.5 HU; interquartile range -84.9 to -78.0) was higher than that measured on unenhanced scans (-73.4 HU; -76.9 to -69.4) (<em>p</em> &lt; 0.001), whereas paracardiac and subcutaneous adipose tissue densities were not (<em>p</em> ≥ 0.055). Patients with or without CAD, did not show significant differences in density of epicardial, paracardiac, and subcutaneous adipose tissue either on unenhanced or contrast-enhanced scans (<em>p</em> ≥ 0.092). CAD patients may experience different phenomena (inflammation, fibrosis, increase in adipose depots) leading to rises or drops in epicardial adipose tissue density, resulting in variations that are difficult to detect.
DOI: 10.6084/m9.figshare.19068164.v1
title: Online data for "Rain impacts on the surface atmosphere and upper ocean in the central equatorial Pacific"

description: Data from TAO, JRA55do, ROMS and LES used in Whitt, D.B. (2022) "Rain impacts on the surface atmosphere and upper ocean in the central equatorial Pacific" manuscript submitted for publication.
DOI: 10.6084/m9.figshare.14865576.v1
title: S6 - Anvi'o 7 pangenome full databases for Rickettsia, Megaira and Tisiphia (==torix Rickettsia)

description: <b>What is it</b> The Anvi'o 7 databases used to build the pangenome for Rickettsia, Megaira and Tisiphia(==torix Rickettsia) with all annotation information from KEGG and COG20 aswell as pyANI Average Nucleotide Identity scores.<br> <b>Why is it</b> Much information is lost in the transition from interactive figure to a paper appropriate figure. Access to these databases which contain all metadata required will enable anyone with Anvi’o installed to view an interactive version of the pangenome displayed in the paper "Genomic diversity in the genus Rickettsia and its sister groups indicate the torix group are evolutionarily distinct"<br> <b>Use and benefit</b> Transparency and replicability for our data. Also allows others to investigate and extract our raw genomic data.
DOI: 10.17632/gnf7tndkph.1
title: Altered Frequency and Phenotype of HLA-G-Expressing DC-10 in Type 1 Diabetes Patients at Onset and in Subjects at Risk to Develop the Disease. 

description: In the manuscript "Altered Frequency and Phenotype of HLA-G-Expressing DC-10 in Type 1 Diabetes Patients at Onset and in Subjects at Risk to Develop the Disease"  (doi: 10.3389/fimmu.2021.750162.), we reported, for the first time, the evaluation of a population of HLA-G-expressing tolerogenic dendritic cells in the peripheral blood of T1D patients and first-degree relatives demonstrating the impairment in the number and phenotype of DC-10 is associated with the risk to T1D.
The three dataset here loaded (Raw_data_1, 2, and 3) contain all the clinical and immunological data, supporting our conclusions, that have been used to build the manuscript.
An additional file (raw_data_description) contains the main guidelines to correctly associate the raw data with the corresponding figure/table in the manuscript.
DOI: 10.5281/zenodo.5817141
title: Hydrogeological data of groundwater and precipitation monitored in the Vögelsberg landslide catchment

description: Data contains hydrogeological data of precipitation and groundwater within the catchment of the Vögelsberg landslide (Tyrol, Austria) monitored between 2017-11-22 and 2021-07-05. The dataset provides time series of discharge, temperature, electrical conductivity and stable isotope ratios in groundwater and precipitation. Dataset is associated to following preprint: “Pfeiffer, J.; Zieher, T.; Schmieder, J.; Bogaard, T.; Rutzinger, M. and Spötl, C. (2021) Spatial assessment of probable recharge areas - Investigating the hydrogeological controls of an active deep-seated gravitational slope deformation, Natural Hazards and Earth System Sciences Discussions, Vol. 2021, p. 1-29, https://doi.org/10.5194/nhess-2021-388”. Accompanying readme file gives a detailed description of data fields contained in the published data.
DOI: 10.5281/zenodo.5817140
title: Hydrogeological data of groundwater and precipitation monitored in the Vögelsberg landslide catchment

description: Data contains hydrogeological data of precipitation and groundwater within the catchment of the Vögelsberg landslide (Tyrol, Austria) monitored between 2017-11-22 and 2021-07-05. The dataset provides time series of discharge, temperature, electrical conductivity and stable isotope ratios in groundwater and precipitation. Dataset is associated to following preprint: “Pfeiffer, J.; Zieher, T.; Schmieder, J.; Bogaard, T.; Rutzinger, M. and Spötl, C. (2021) Spatial assessment of probable recharge areas - Investigating the hydrogeological controls of an active deep-seated gravitational slope deformation, Natural Hazards and Earth System Sciences Discussions, Vol. 2021, p. 1-29, https://doi.org/10.5194/nhess-2021-388”. Accompanying readme file gives a detailed description of data fields contained in the published data.
DOI: 10.5281/zenodo.5180494
title: Storylines of UK drought based on the 2010–2012 event

description: Model input (precipitation and PET) and output (simulated river flows) using the GR4J hydrological model for 100 UK catchments for the different storylines investigated in the paper submitted to Hydrology and Earth System Sciences (HESS). The storylines investigated are storylines of seasonal contribution, precondition severity, "three dry winters" and climate change.
DOI: 10.5281/zenodo.5180493
title: Storylines of UK drought based on the 2010–2012 event

description: Model input (precipitation and PET) and output (simulated river flows) using the GR4J hydrological model for 100 UK catchments for the different storylines investigated in the paper submitted to Hydrology and Earth System Sciences (HESS). The storylines investigated are storylines of seasonal contribution, precondition severity, "three dry winters" and climate change.
DOI: 10.5281/zenodo.5906142
title: tomato tissue transcriptome -8

description: tomato tissue transcriptome
DOI: 10.5281/zenodo.5906141
title: tomato tissue transcriptome -8

description: tomato tissue transcriptome
DOI: 10.5281/zenodo.5906140
title: tomato tissue transcriptome -7

description: tomato tissue transcriptome
DOI: 10.5281/zenodo.5906139
title: tomato tissue transcriptome -7

description: tomato tissue transcriptome
DOI: 10.25345/c5h57j
title: MassIVE MSV000088733 - Monoclonal Antibody Product Quality Attributes MAM
title: Chimeric IgG1 mAb drug product peptide mapping experiment. Three replicates are provided as 1, 2 and 3
DOI: 10.5281/zenodo.5879316
title: Model output for "Numerically consistent budgets of potential temperature, momentum, and moisture in Cartesian coordinates: application to the WRF model"

description: These data were produced with WRFlux v1.2.1 (https://github.com/matzegoebel/WRFlux/) from a numerical simulation with the community model WRF. Simulations represent the evolution of a convective boundary layer in the atmosphere over an idealized 2D mountain ridge. The data are published in connection with the article "Numerically consistent budgets of potential temperature, momentum and moisture in Cartesian coordinates: Application to the WRF model" in "Geoscientific Model Development" (https://doi.org/10.5194/gmd-15-669-2022). Three-dimensional (x, z, t) fields of five prognostic variables are provided: Potential temperature (T), water vapor mixing ratio (Q), cross-mountain (U), along-mountain (V), and vertical windspeed (W). All fields are averaged in time (30 min averaging interval) and in the along-mountain direction y. The repository contains the following files: grid.nc : variables related to the WRF numerical grid, air density<br> [U,W,T,Q]_flux.nc : resolved and subgrid-scale fluxes<br> [U,W,T,Q]_tendency.nc : resolved and subgrid-scale tendency components<br> UVWT_MEAN.nc : averaged values of the variables themselves<br> plotting.py : python script to approximately reproduce the figures of the paper. Requires the python packages matplotlib, xarray, and netcdf4. Figure 6 in the paper cannot be accurately reproduced with these data since the original figure uses 4D (x, y, z, t) output. For details on the simulation, refer to the article.
DOI: 10.5281/zenodo.5879315
title: Model output for "Numerically consistent budgets of potential temperature, momentum, and moisture in Cartesian coordinates: application to the WRF model"

description: These data were produced with WRFlux v1.2.1 (https://github.com/matzegoebel/WRFlux/) from a numerical simulation with the community model WRF. Simulations represent the evolution of a convective boundary layer in the atmosphere over an idealized 2D mountain ridge. The data are published in connection with the article "Numerically consistent budgets of potential temperature, momentum and moisture in Cartesian coordinates: Application to the WRF model" in "Geoscientific Model Development" (https://doi.org/10.5194/gmd-15-669-2022). Three-dimensional (x, z, t) fields of five prognostic variables are provided: Potential temperature (T), water vapor mixing ratio (Q), cross-mountain (U), along-mountain (V), and vertical windspeed (W). All fields are averaged in time (30 min averaging interval) and in the along-mountain direction y. The repository contains the following files: grid.nc : variables related to the WRF numerical grid, air density<br> [U,W,T,Q]_flux.nc : resolved and subgrid-scale fluxes<br> [U,W,T,Q]_tendency.nc : resolved and subgrid-scale tendency components<br> UVWT_MEAN.nc : averaged values of the variables themselves<br> plotting.py : python script to approximately reproduce the figures of the paper. Requires the python packages matplotlib, xarray, and netcdf4. Figure 6 in the paper cannot be accurately reproduced with these data since the original figure uses 4D (x, y, z, t) output. For details on the simulation, refer to the article.