cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.c2pt0/1
title: Dataset analyzed for paper described above

description: Data for 577 two-year-old humans who participated in the Boston University Twin Project.  Twin pairs were assigned to cluster j, and individuals (monozygotic) or twin pairs (dizygotic) to cluster k. Collection of data for Mental Development Index (MDI) and Elicited Composite Score (EIS) described in doi:10.1007/s10519-007-9160-5; genotyping for 5HTTLPR described in doi:10.1186/1471-244X-10-102. Variable "male" is assigned value of 1 if male, 0 if female; variable "short_allele" is assigned value of 1 if individual has 1 or 2 copies of short allele at 5HTTLPR.
DOI: 10.5061/dryad.c79vc/1
title: Trait values per species

description: Trait values for all the species used in the phenotypic rate analyses.
DOI: 10.5061/dryad.c79vc/2
title: Color validation

description: Spectral and RGB measurements for species used in the colour validation analyses.
DOI: 10.5061/dryad.f5f1t/1
title: CT scan renderings of the jacket #2 of CRILAR-Pv 530/1

description: The video shows a 3D reconstruction of the 5 eggs present in the jacket #2 of CRILAR-Pv 530/1. In addition, it is shown in detail an external and internal view of e1. Inside it, the slices show several cracks that are normal to the bedding plane and describe a slightly concentric pattern.
DOI: 10.5061/dryad.f862c/53
title: M616E24-Normal Control RBC+WGA

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/54
title: M618E0-Control C3D

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/55
title: M618E0-Control C4D

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/56
title: M618E0-Control DAF

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/57
title: M618E0-Control IgG

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/58
title: M618E0-Control RBC

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/59
title: M618E0-Control RBC+WGA

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/60
title: M618E0-Sepsis +DAF

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/61
title: M618E0-Sepsis C3D

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/62
title: M618E0-Sepsis C4D

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.g40f0/1
title: haplotypes_info

description: Information on the background of haplotypes (Asian, European or both) for all Large White pigs.
DOI: 10.5061/dryad.hm202/1
title: Supplementary table 1

description: Species and GenBank accession numbers for rag1 sequences used in this study.
DOI: 10.5061/dryad.hm202/2
title: Supplementary figure 1

description: Unconstrained topology for selected taxa in the salamander family Plethodontidae using Rag1 sequence obtained from GenBank.
DOI: 10.5061/dryad.hm202/3
title: Supplementary figure 2

description: Topology for selected taxa in the salamander family Plethodontidae using Rag1 sequence obtained from GenBank. This topology is constrained to form a monophyletic unit for Pseudotrition, Gyrinophilus, and Stereochilus.
DOI: 10.5061/dryad.hm202/4
title: Supp. Fig. 3 - Gland presence parsimony

description: Parsimony reconstruction of mental glands within Plethodontidae. Two states were considered: absent (white) and present (black). Pie charts at each node provide the most parsimonious reconstruction for each node. The phylogeny was reconstructed using a Bayesian analysis of Rag1 sequences (see Materials and Methods).
DOI: 10.5061/dryad.hm202/5
title: Supp. Fig. 4 - Gland morphology parsimony

description: Parsimony reconstruction of mental gland morphology within Plethodontidae. Six unordered states were considered: absent (white), small pad (black), large pad (red), anterior protrusion (yellow), bifurcated (green), and fan-shaped (blue). Pie charts at each node provide the most parsimonious reconstruction for each node. The phylogeny was reconstructed using a Bayesian analysis of Rag1 sequences (see Materials and Methods).
DOI: 10.5061/dryad.v7f30/1
title: BEAST_files

description: BEAST files, including input .xml and final maximum clade credibility tree.
DOI: 10.5061/dryad.v7f30/2
title: RAxML_files

description: RAxML files, including input alignment & partition file and final tree.
DOI: 10.5061/dryad.v7f30/3
title: PartitionFinder_files

description: Input & output from PartitionFinder analyses.
DOI: 10.5061/dryad.v7f30/4
title: Arctotherium_SeqData_Filtered_Collapsed.fastq

description: FASTQ file containing filtered, de-mulitplexed, and collapsed MiSeq (Illumina) sequencing reads corresponding to the Arctotherium enriched genomic library. See main publication for full details on data processing.
DOI: 10.5061/dryad.v83fj/5
title: Primer sequences and lists of module genes
DOI: 10.5061/dryad.v83fj/6
title: R commands used in this study
DOI: 10.5061/dryad.v83fj/8
title: Names non correlated lincRNAs

description: Names of the 1853 lincRNAs with no correlated gene expression with the nearest coding gene
DOI: 10.5061/dryad.v83fj/9
title: Names lincRNAs

description: The names of the 2421 lincRNAs.
DOI: 10.5061/dryad.184s0/1
title: Tsengetal_PRSB_STL_files

description: STL files of 3D mandible models analyzed in the study.
DOI: 10.5061/dryad.184s0/2
title: Tsengetal_PRSB_FE_models

description: Finite element models of all species analyzed in the study, with forces loaded. In Strand7 file format.
DOI: 10.5061/dryad.20t9v/17
title: Demographic estimation data - s9481

description: A Matlab file containing data related to demographic parameter estimation by means of Approximate Bayesian Computation.
DOI: 10.5061/dryad.20t9v/18
title: Demographic estimation data - s8148

description: A Matlab file containing data related to demographic parameter estimation by means of Approximate Bayesian Computation.
DOI: 10.5061/dryad.20t9v/19
title: Demographic estimation data - s48101

description: A Matlab file containing data related to demographic parameter estimation by means of Approximate Bayesian Computation.
DOI: 10.5061/dryad.20t9v/20
title: Demographic estimation data - s7061

description: A Matlab file containing data related to demographic parameter estimation by means of Approximate Bayesian Computation.
DOI: 10.5061/dryad.21723/1
title: LahtiArdia16 Data+Figuress

description: Data underlying analyses and figures in our paper.
DOI: 10.5061/dryad.256hn/11
title: Ghirsutum_TM1_15dpa

description: Illumina HiSeq 2500 100-bp single-end RNA-seq from Gossypium hirsutum accession TM-1 fiber at 15 days post anthesis, grown in greenhouse; format: fastq.gz
DOI: 10.5061/dryad.256hn/14
title: Ghirsutum_TX665_10dpa

description: Illumina HiSeq 2500 100-bp single-end RNA-seq from Gossypium hirsutum accession TX665 fiber at 10 days post anthesis, grown in greenhouse; format: fastq.gz
DOI: 10.5061/dryad.256hn/15
title: Ghirsutum_TX665_15dpa

description: Illumina HiSeq 2500 100-bp single-end RNA-seq from Gossypium hirsutum accession TX665 fiber at 15 days post anthesis, grown in greenhouse; format: fastq.gz
DOI: 10.5061/dryad.256hn/16
title: Ghirsutum_TX665_20dpa

description: Illumina HiSeq 2500 100-bp single-end RNA-seq from Gossypium hirsutum accession TX665 fiber at 20 days post anthesis, grown in greenhouse; format: fastq.gz
DOI: 10.5061/dryad.256hn/17
title: Ghirsutum_TX2095_5dpa

description: Illumina HiSeq 2500 100-bp single-end RNA-seq from Gossypium hirsutum accession TX2095 fiber at 5 days post anthesis, grown in greenhouse; format: fastq.gz
DOI: 10.5061/dryad.256hn/18
title: Ghirsutum_TX2095_10dpa

description: Illumina HiSeq 2500 100-bp single-end RNA-seq from Gossypium hirsutum accession TX2095 fiber at 10 days post anthesis, grown in greenhouse; format: fastq.gz
DOI: 10.5061/dryad.256hn/19
title: Ghirsutum_TX2095_15dpa

description: Illumina HiSeq 2500 100-bp single-end RNA-seq from Gossypium hirsutum accession TX2095 fiber at 15 days post anthesis, grown in greenhouse; format: fastq.gz
DOI: 10.5061/dryad.256hn/20
title: Ghirsutum_TX2095_20dpa

description: Illumina HiSeq 2500 100-bp single-end RNA-seq from Gossypium hirsutum accession TX2095 fiber at 20 days post anthesis, grown in greenhouse; format: fastq.gz
DOI: 10.5061/dryad.256hn/21
title: Ghirsutum_yuc_5dpa

description: Illumina HiSeq 2500 100-bp single-end RNA-seq from Gossypium hirsutum var yucatanense fiber at 5 days post anthesis, grown in greenhouse; format: fastq.gz
DOI: 10.5061/dryad.256hn/22
title: Ghirsutum_yuc_10dpa

description: Illumina HiSeq 2500 100-bp single-end RNA-seq from Gossypium hirsutum var yucatanense fiber at 10 days post anthesis, grown in greenhouse; format: fastq.gz
DOI: 10.5061/dryad.52hp1/1
title: BeaulieuOMearaSupplementalMaterials

description: Supplemental Materials document
DOI: 10.5061/dryad.52hp1/8
title: R scripts used in the manuscript
DOI: 10.5061/dryad.6n579/1
title: Juvenile surival

description: The input file used for the juvenile survival analysis first individual covariate is the standardized connectivity to goshawk nest sites, and the second individual covariate is the standardized distance to the nearest goshawk nest site
DOI: 10.5061/dryad.6n579/2
title: Temporal covariates for juvenile survival analysis

description: Temporal covariates for juvenile survival analysis. The first covariate is the standardized autumn vole density, The second is the standardized local goshawk abundance. The third is the standardized total goshawk abundance. The 4th is the interaction between the 1st and 2nd covariates. The 5th is the interaction between the 1st and 3rd covariate.
DOI: 10.5061/dryad.6p46m/1
title: Data_nectar_GTX_spatial

description: Data file (.csv format) containing individual plant coordinates, nectar GTX concentration and climatic and environmental covariates
DOI: 10.5061/dryad.8734c/1
title: Fig2_RawData

description: Figure 2. µXRF maps of element distributions in unstained methacrylate-embedded thin mid-tubule sections of woodlouse hepatopancreas. A. Light micrograph of a transverse section from a woodlouse sampled at 02:00 hours (i.e. the beginning of ‘B’-cell restitution during darkness). Note that the morphology of the sections used for ?XRF is relatively unclear; this is due to a lack of differential contrast in sections that were unstained and infiltrated with methacrylate resin. S5_sp_light3x10.tifB. Superimposed Cu, Fe and Zn µXRF maps of the section depicted in 2A; note the co-distribution of Cu and Zn in ‘S’-cells (arrow heads), and the distribution of diffuse Fe mainly in ‘B’-cell apical cytoplasm that might be undergoing blebbing (arrows), and some Fe signal within the tubule lumen (broken arrows). File Prefix 6191C. Superimposed Cu, P and S µXRF maps of the section depicted in 2A; note the co-distribution of Cu and S in ‘S’-cells (arrowheads), and the mainly apical distribution of P in ‘B’-cells (arrows). File Prefix 6191D. Light micrograph of a mid-tubule transverse section from a woodlouse at 12:00 hours (i.e. at the beginning of ‘B’-cell extrusion during the day). S4_sp_Light4x10E. Superimposed Cu, Fe and Zn µXRF maps of the section depicted in 2D; note that there is a partial section of a second tubule in the top-right of the micrograph, and that the transition metal distribution patterns are similar to those seen in 2B. File prefix - 5983F. Expanded view µXRF maps for the region delineated by a broken-lined rectangle in 2E; note that Fe is distributed above and below the nuclear plane (arrow) of the prominent ‘B’-cell, albeit mainly in the apical cytoplasm. File prefix - 5984G and H are schematic diagrams derived from Hames and Hopkin [36] illustrating the gross difference between ‘B’- and ‘S’-cell morphology (G), and a ‘clock’ summarizing the diurnal cycle of apocrine secretion in ‘B’-cells in relation to the light:dark regime with our two XAS sampling points superimposed upon it (H).File types included:tif - Image files (Light Micrographs).dat : map data showing the stage positions in mm and windowed fluorescence counts.  Column format:Horizontal  position ; vertical position; time per point (ms); I0; It; Idrain; mca file..edf file ESRF format file for program PyMCA containing the summed MCA files for each point in a map row by row. Binary data format.rgb file windowed detector counts for selected chemical elements of interest , column format:y index; x index; time;  i0  it  idrain; then elements as listed in first row.
DOI: 10.5061/dryad.8734c/2
title: Fig3_RawData

description: Figure 3.Panel A. Cu K-edge XANES spectra from:O. asellus ‘S’-cells at 02:00 hours (red; i-iv) Spectral range 5960-65 (n=5)Spectral range 6085-89 (n=5)Spectral range 6099-103 (n=5)Spectral range 6123-27 (n=5)O. asellus 12:00 hours (green; v-vi); Spectral range 5993-98 (n=4)Spectral range 6174 (n=1)O. asellus ‘B’-cells at 02:00 hours (blue; vii-xi) Spectral range 5975-79 (n=5)Spectral range 6090-94 (n=5)Spectral range 6110-14 (n=5)Spectral range 6133-37 (n=5)Spectral range 6148-49 (n=2)O. asellus 12:00 hours (brown; xii) clock time Spectral range 6175 (n=1)see Table 2 for the fit dataFile type provided: XAS_dtc.dat  - deadtime corrected (DTC) XAS files; column format:Monochromator angle  :  energy : time per point  :  I0  : It;  Idrain :  raw fluorescence counts channels 1-9: summed raw fluorescence counts: DTC flu counts channels 1-9: summed DTC fluorescence counts
DOI: 10.5061/dryad.8734c/3
title: Fig4_RawData

description: Figure 4. A. Cu K-edge EXAFS data (solid lines) and fits (broken lines) from: O. asellus ‘S’-cell at 02:00 hours (red; i)Spectral Range 5960-65 (n=5)O. asellus  ‘B’-cells at 02:00 hours (blue; ii & iii)Spectral Range 5975-79 (n=5)Spectral Range 6148-49 (n=2)O. asellus ‘B’-cells 12:00 hours (brown; iv) Spectral Range 6175 (n=2)(see Table 3 for corresponding quantitative data). B. Fourier transforms of the Cu EXAFS data (solid lines) and fits (broken lines) depicted in Fig. 4A.File type provided: XAS_dtc.dat  - deadtime corrected (DTC) XAS files; column format:Monochromator angle  :  energy : time per point  :  I0  : It;  Idrain :  raw fluorescence counts channels 1-9: summed raw fluorescence counts: DTC flu counts channels 1-9: summed DTC fluorescence counts
DOI: 10.5061/dryad.8734c/4
title: Fig5_RawData

description: Figure 5. A. Fe K-edge XANES spectra from: O. asellus ‘S’-cell at 12:00 hours (green; i)Spectral Range 6172 (n=1)O. asellus ‘B’-cells at 02:00 hours (blue; ii - iv)Spectral Range 5967-74 (n=8)Spectral Range 6104-08 (n=5)Spectral Range 6128-32 (n=5)O. asellus ‘B’-cells 12:00 hours (brown; v - vi)Spectral Range 5985-91 (n=7)Spectral Range 6170-71 (n=2)(see Table 2 for the fit data)File type provided: XAS_dtc.dat  - deadtime corrected (DTC) XAS files; column format:Monochromator angle  :  energy : time per point  :  I0  : It;  Idrain :  raw fluorescence counts channels 1-9: summed raw fluorescence counts: DTC flu counts channels 1-9: summed DTC fluorescence counts
DOI: 10.5061/dryad.8734c/5
title: Fig6_RawData

description: Figure 6. A. Fe K-edge EXAFS data (solid lines) and fits (broken lines) from: O. asellus ‘S’-cell at 12:00 hours (green; i)Spectral Range 6172 (n=1)O. asellus  ‘B’-cells 02:00 hours (blue; ii)Spectral Range 5967-74 (n=7)O. asellus  ‘B’-cells 12:00 hours (brown; iii & iv)Spectral Range 5985-91 (n=7)Spectral Range 6170-71 (n=2)(see Table 3 for corresponding quantitative data). B. Fourier transforms of the Fe EXAFS data (solid lines) and fits (broken lines) depicted in Fig. 6A.File type provided: XAS_dtc.dat  - deadtime corrected (DTC) XAS files; column format:Monochromator angle  :  energy : time per point  :  I0  : It;  Idrain :  raw fluorescence counts channels 1-9: summed raw fluorescence counts: DTC flu counts channels 1-9: summed DTC fluorescence counts
DOI: 10.5061/dryad.8qj84/3
title: Experiment 3 - Oviposition bioassay data

description: Two-choice oviposition bioassay data generated in the laboratory. Column headings: Replicate – replicate number.Ripe_Eggs – number of eggs laid on a ripe blueberry inoculated with 3 ul of minimal medium after 23 hours.Ripe+Hu_Eggs – number of eggs laid on a ripe blueberry inoculated with 3 ul of a Hanseniaspora uvarum suspension grown in liquid minimal medium after 23 hours.
DOI: 10.5061/dryad.8qj84/4
title: Experiment 4 - Oviposition & Feeding (OviCAFE) bioassay data

description: Oviposition and Feeding (OviCAFE) bioassay data generated in the laboratory. Column headings:Replicate – replicate number.Treatment – solution contained in the feeding capillary; either liquid minimal medium (Media) or a suspension of Hanseniaspora uvarum grown in liquid minimal medium (Yeast).Amount_ul - amount of each treatment consumed by the Drosophila suzukii female in 23 hours.Eggs - number of eggs laid by each fly after 23 hours.
DOI: 10.5061/dryad.8qj84/5
title: Experiment 5 - Insecticide bioassay data

description: Insecticide bioassay data generated in the laboratory. Column headings:Replicate – replicate number.Treatment – treatment applied to each arena (bowl). Hu_Entrust – Hanseniaspora uvarum and spinosad insecticide; Entrust – spinosad insecticide alone; Hu_Alone – Hanseniaspora uvarum alone; Water_control – water. Treatments with insecticide contained 5 mg of active ingredient/L. Eggs_total – total number of eggs laid on the 5 cherries in each arena by 10 Drosophila suzukii females after 16 hours.Females_alive – number of alive Drosophila suzukii females in each arena after 24 hours.Females_dead – number of dead Drosophila suzukii females in each arena after 24 hours.
DOI: 10.5061/dryad.8rc4r/10
title: Appendix_1
DOI: 10.5061/dryad.8rc4r/11
title: Appendix_2
DOI: 10.5061/dryad.8rc4r/4
title: 4_RAxML_oufilies
DOI: 10.5061/dryad.8rc4r/5
title: 5_BEAST_infiles_outfiles
DOI: 10.5061/dryad.8rc4r/6
title: 6_Delimitations_results

description: For mtCOI, nu28S, and nuITS1 includes results of the methods: ABGD, GMYC-BEAST, GMYC-PATHd8, GMYC-r8s, bGMYC, and PTP. In the case of nu28S, and nuITS1 also chromatogram information (inside the haplowebs folder) and in the case of nuITS1 also heterozygosities and the files for the haplowebs method.
DOI: 10.5061/dryad.8rc4r/7
title: 7_JML_tests_infiles_outfiles

description: Also includes infiles and outfiles of the starBEAST simulations
DOI: 10.5061/dryad.8rc4r/8
title: 8_STRUCTURE_NewHybrids_infiles_outfiles
DOI: 10.5061/dryad.8rc4r/9
title: 9_Rotifer_microphotographs
DOI: 10.5061/dryad.c1b54/2
title: FARMTABLE1

description: Farm information
DOI: 10.5061/dryad.c1b54/3
title: FARMTABLE2

description: Flock data: optical flow, Campylobacter status and temperature
DOI: 10.5061/dryad.d9v38/1
title: Optical recordings of &gt;11,000 RGCs

description: The dataset contains recordings of 11,210 retinal ganglion cells from the mouse retina obtained by two-photon calcium imaging with the synthetic calcium indicator OGB-1 to a standardized set of stimuli (see Baden et al. 2016 for details). In addition, the dataset contains morphological, genetic and immunohistochemical metadata, where available.
DOI: 10.5061/dryad.f862c/63
title: M618E0-Sepsis IgG

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/64
title: M618E0-Sepsis RBC

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/65
title: M618E0-Sepsis RBC+WGA

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/66
title: M618E24-Data1

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/67
title: M618E24-Data2

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/68
title: M618E24-Data3

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/69
title: M618E24-Data4

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/70
title: M618E24-Data5

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/71
title: M618E24-Data6

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.g40f0/2
title: phenotypes_info

description: Information on the phenotypes backfat and litter size for all Large White pigs in the experiment.
DOI: 10.5061/dryad.hm202/10
title: Supp. Fig. 9 - Biting restraint parsimony

description: Parsimony reconstruction of biting/restraint behavior within Plethodontidae. Two states were considered: absent (white) and present (black). Pie charts at each node provide the most parsimonious reconstruction for each node. The phylogeny was reconstructed using a Bayesian analysis of Rag1 sequences (see Materials and Methods).
DOI: 10.5061/dryad.hm202/6
title: Supp. Fig. 5 - Head rubbing parsimony

description: Parsimony reconstruction of heading rubbing within Plethodontidae. Two states were considered: absent (white) and present (black). Pie charts at each node provide the most parsimonious reconstruction for each node. The phylogeny was reconstructed using a Bayesian analysis of Rag1 sequences (see Materials and Methods).
DOI: 10.5061/dryad.hm202/7
title: Supp. Fig. 6 - Pulling parsimony

description: Parsimony reconstruction of pulling behavior within Plethodontidae. Two states were considered: absent (white) and present (black). Pie charts at each node provide the most parsimonious reconstruction for each node. The phylogeny was reconstructed using a Bayesian analysis of Rag1 sequences (see Materials and Methods).
DOI: 10.5061/dryad.hm202/8
title: Supp. Fig. 7 - Snapping parsimony

description: Parsimony reconstruction of snapping behavior within Plethodontidae. Two states were considered: absent (white) and present (black). Pie charts at each node provide the most parsimonious reconstruction for each node. The phylogeny was reconstructed using a Bayesian analysis of Rag1 sequences (see Materials and Methods).
DOI: 10.5061/dryad.hm202/9
title: Supp. Fig. 8 - Slapping parsimony

description: Parsimony reconstruction of slapping behavior within Plethodontidae. Two states were considered: absent (white) and present (black). Pie charts at each node provide the most parsimonious reconstruction for each node. The phylogeny was reconstructed using a Bayesian analysis of Rag1 sequences (see Materials and Methods
DOI: 10.5061/dryad.j0v43/1
title: RegenerationFinal

description: Data file with seedling abundance records arranged by site, elevation and X-Y coordinates.
DOI: 10.5061/dryad.j1617/1
title: Herbivory experiment data.

description: Master data file consisting of 6 tabs including a metadata tab explaining all contents.
DOI: 10.5061/dryad.k6c82/1
title: AE phylogenies

description: This is a .zip file containing concatenated and individual Anchored Enrichment loci nucleotide matrices for phylogenetic inference.
DOI: 10.5061/dryad.k6c82/2
title: Aphonopelma_morphology_images

description: A spreadsheet with filename information for all morphology images associated with species in the revision.
DOI: 10.5061/dryad.k6c82/3
title: CO1_accessions

description: Spreadsheet listing the CO1 GenBank accession numbers.
DOI: 10.5061/dryad.km484/1
title: Figueroa-Lara A, Gonzalez-Block M, Alarcón-Irigoyen J_PLoS_26_12_2015
DOI: 10.5061/dryad.p0h3t/1
title: TBSS_FA_CBF_N43data

description: N=43 files for TBSS analysis of FA and CBF data