cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22237684.v1
title: PGLSdataNov22.xlsx from Interspecific sociality alters the colonization and extinction rates of birds on subtropical reservoir islands

description: This is the data for the PGLS analysis
DOI: 10.6084/m9.figshare.22237687
title: Flocking propensities for resident birds.xlsx from Interspecific sociality alters the colonization and extinction rates of birds on subtropical reservoir islands

description: This is the data on the species' propensities to flock
DOI: 10.6084/m9.figshare.22237687.v1
title: Flocking propensities for resident birds.xlsx from Interspecific sociality alters the colonization and extinction rates of birds on subtropical reservoir islands

description: This is the data on the species' propensities to flock
DOI: 10.6084/m9.figshare.22237690
title: BiogeographyAnalysisNov22.R from Interspecific sociality alters the colonization and extinction rates of birds on subtropical reservoir islands

description: This is the code for the main ANCOVA analysis
DOI: 10.6084/m9.figshare.22237690.v1
title: BiogeographyAnalysisNov22.R from Interspecific sociality alters the colonization and extinction rates of birds on subtropical reservoir islands

description: This is the code for the main ANCOVA analysis
DOI: 10.6084/m9.figshare.22237693
title: TILcolextra1and0new.csv from Interspecific sociality alters the colonization and extinction rates of birds on subtropical reservoir islands

description: This is the data for the ANCOVA analysis with 2 levels of intraspecific sociality
DOI: 10.6084/m9.figshare.22237693.v1
title: TILcolextra1and0new.csv from Interspecific sociality alters the colonization and extinction rates of birds on subtropical reservoir islands

description: This is the data for the ANCOVA analysis with 2 levels of intraspecific sociality
DOI: 10.6084/m9.figshare.22237663
title: Brando-Forero 20230308 CAF

description: The data used for the tracking of CAF´s strategies and behavior originate entirely in primary sources. The compilation and construction of basic statistical series was possible thanks to the revision and analysis of the Corporation´s annual reports, balance sheets, and income statements, as well as from other publications by the Corporation and by official agencies from shareholding nations – available from public libraries.
DOI: 10.6084/m9.figshare.22237663.v2
title: Brando-Forero 20230308 CAF

description: The data used for the tracking of CAF´s strategies and behavior originate entirely in primary sources. The compilation and construction of basic statistical series was possible thanks to the revision and analysis of the Corporation´s annual reports, balance sheets, and income statements, as well as from other publications by the Corporation and by official agencies from shareholding nations – available from public libraries.
DOI: 10.6084/m9.figshare.22237663.v1
title: Untitled Item

description: The data used for the tracking of CAF´s strategies and behavior originate entirely in primary sources. The compilation and construction of basic statistical series was possible thanks to the revision and analysis of the Corporation´s annual reports, balance sheets, and income statements, as well as from other publications by the Corporation and by official agencies from shareholding nations – available from public libraries.
DOI: 10.25345/c5k35mq12
title: MassIVE MSV000091447 - GNPS_GC-MS_Sugarcane wastes in different solvents
title: This GC-MS dataset contained sugarcane parts i.e. bagasse, filter cake, leave and top, leave, stem and root. Each cane parts were extracted with Soxhlet to compare extraction solvent such as ethanol (EtOH), methanol (MeOH), ethyl acetate (EtOAc), tert-butyl methyl ether (TBME) and hexane.
DOI: 10.6084/m9.figshare.22237705
title: Data analysis from Systemic orchestration of cell size throughout the body: influence of sex and rapamycin exposure in <i>Drosophila melanogaster</i>

description: Data, metadata and R codes used in the statistical analysis
DOI: 10.6084/m9.figshare.22237705.v1
title: Data analysis from Systemic orchestration of cell size throughout the body: influence of sex and rapamycin exposure in <i>Drosophila melanogaster</i>

description: Data, metadata and R codes used in the statistical analysis
DOI: 10.6084/m9.figshare.22237712
title: Data for Taylor et al. (2013) Hagfish Slime Clogging Study from Mechanisms of gill-clogging by hagfish slime

description: Spreadsheet containing all the data presented in the figures in the manuscript.
DOI: 10.6084/m9.figshare.22237739
title: Captions and titles contained in Captions.tex from Identifying the genetic basis of viral spillover using Lassa virus as a test case

description: The rate at which zoonotic viruses spill over into the human population varies significantly over space and time. Remarkably, we do not yet know how much of this variation is attributable to genetic variation within viral populations. This gap in understanding arises because we lack methods of genetic analysis that can be easily applied to zoonotic viruses, where the number of available viral sequences is often limited and opportunistic sampling introduces significant population stratification. Here, we explore the feasibility of using patterns of shared ancestry to correct for population stratification, enabling genome-wide association methods to identify genetic substitutions associated with spillover into the human population. Using a combination of phylogenetically structured simulations and Lassa virus sequences collected from humans and rodents in Sierra Leone, we demonstrate that existing methods do not fully correct for stratification, leading to elevated error rates. We also demonstrate, however, that the Type I error rate can be substantially reduced by confining the analysis to a less-stratified region of the phylogeny, even in an already-small dataset. Using this method, we detect two candidate single-nucleotide polymorphisms associated with spillover in the Lassa virus polymerase gene and provide generalized recommendations for the collection and analysis of zoonotic viruses.
DOI: 10.6084/m9.figshare.22237739.v1
title: Captions and titles contained in Captions.tex from Identifying the genetic basis of viral spillover using Lassa virus as a test case

description: The rate at which zoonotic viruses spill over into the human population varies significantly over space and time. Remarkably, we do not yet know how much of this variation is attributable to genetic variation within viral populations. This gap in understanding arises because we lack methods of genetic analysis that can be easily applied to zoonotic viruses, where the number of available viral sequences is often limited and opportunistic sampling introduces significant population stratification. Here, we explore the feasibility of using patterns of shared ancestry to correct for population stratification, enabling genome-wide association methods to identify genetic substitutions associated with spillover into the human population. Using a combination of phylogenetically structured simulations and Lassa virus sequences collected from humans and rodents in Sierra Leone, we demonstrate that existing methods do not fully correct for stratification, leading to elevated error rates. We also demonstrate, however, that the Type I error rate can be substantially reduced by confining the analysis to a less-stratified region of the phylogeny, even in an already-small dataset. Using this method, we detect two candidate single-nucleotide polymorphisms associated with spillover in the Lassa virus polymerase gene and provide generalized recommendations for the collection and analysis of zoonotic viruses.
DOI: 10.17909/zqdf-7v08
title: JWST/NIRCam Data used in Zhang et al. (2023)
DOI: 10.6084/m9.figshare.22237745
title: Data from Diagnosis of a brain stroke using wideband microwave scattering

description: Uploaded as the second ESM file "Data" including the data at different antennas
DOI: 10.6084/m9.figshare.22237745.v1
title: Data from Diagnosis of a brain stroke using wideband microwave scattering

description: Uploaded as the second ESM file "Data" including the data at different antennas
DOI: 10.6084/m9.figshare.22237748
title: Code from Diagnosis of a brain stroke using wideband microwave scattering

description: uploaded as the first ESM file "CODE.m" (matlab)
DOI: 10.6084/m9.figshare.22237748.v1
title: Code from Diagnosis of a brain stroke using wideband microwave scattering

description: uploaded as the first ESM file "CODE.m" (matlab)
DOI: 10.6084/m9.figshare.22237751
title: wavelet data.rar from Diagnosis of a brain stroke using wideband microwave scattering

description: This paper presents a new computer-aided microwave monitoring system as a promising, portable and inexpensive tool to detect and localize brain stroke using a bank of a new wavelet-matched filters. The head is exposed to microwave radiation over the band from 1.1 to 3 GHz, and the backscattered signals at a hemi-elliptical array of 16 antenna elements surrounding the head are filtered to analyse the perturbation in the microwave signals from the brain. A novel technique is applied to remove the strong reflection from the air-skull interface as a way to estimate the target response and is compared to different techniques from literature to portray their role in the performance. The study results approve that the intensity and the distribution of wavelet energy and Shannon wavelet entropy in the filtered microwave signal, and the novel tool based on the distance between the wavelet energies at symmetric opposite antennas are promising candidate signatures for computer-aided detection and localization of a stroke.
DOI: 10.6084/m9.figshare.22237751.v1
title: wavelet data.rar from Diagnosis of a brain stroke using wideband microwave scattering

description: This paper presents a new computer-aided microwave monitoring system as a promising, portable and inexpensive tool to detect and localize brain stroke using a bank of a new wavelet-matched filters. The head is exposed to microwave radiation over the band from 1.1 to 3 GHz, and the backscattered signals at a hemi-elliptical array of 16 antenna elements surrounding the head are filtered to analyse the perturbation in the microwave signals from the brain. A novel technique is applied to remove the strong reflection from the air-skull interface as a way to estimate the target response and is compared to different techniques from literature to portray their role in the performance. The study results approve that the intensity and the distribution of wavelet energy and Shannon wavelet entropy in the filtered microwave signal, and the novel tool based on the distance between the wavelet energies at symmetric opposite antennas are promising candidate signatures for computer-aided detection and localization of a stroke.
DOI: 10.5281/zenodo.44886
title: Daily Activity and Nest Occupation Patterns of Fox Squirrels (Sciurus niger) Throughout the Year

description: The daily distribution of activity has been studied in detail in ground squirrels in the field as well as in the laboratory, but studies of tree squirrels have been few and generally limited to the sampling of behavior of groups of animals. In this study, the authors investigated the general activity and nest occupation patterns of fox squirrels in a natural setting using temperature-sensitive data loggers that measure activity as changes in the microenvironment of the animal. Data were obtained from 25 distinct preparations, upon 13 unique squirrels, totaling 1385 recording days. Fox squirrels exhibited robust daily rhythmicity of locomotor activity, comparable to that of laboratory rats and gerbils. The animals were clearly diurnal, with a predominantly unimodal activity pattern, although individual squirrels occasionally exhibited bimodal patterns, particularly in the spring and summer. Even during the short days of winter (9 hours), the squirrels typically left the nest after dawn and returned before dusk, spending only about 7 hours out of the nest each day. Although the duration of the daily active phase did not change with the seasons, the squirrels exited the nest earlier in the day when the days became longer in the summer and exited the nest later in the day when the days became shorter in the winter, thus tracking dawn along the seasons. During the few hours each day spent outside the nest, fox squirrels seemed to spend most of the time sitting or lying. These findings suggest that fox squirrels may have adopted a slow life history strategy.
description: Collar temperature is in °C
DOI: 10.5281/zenodo.629492
title: Daily Activity and Nest Occupation Patterns of Fox Squirrels (Sciurus niger) Throughout the Year

description: The daily distribution of activity has been studied in detail in ground squirrels in the field as well as in the laboratory, but studies of tree squirrels have been few and generally limited to the sampling of behavior of groups of animals. In this study, the authors investigated the general activity and nest occupation patterns of fox squirrels in a natural setting using temperature-sensitive data loggers that measure activity as changes in the microenvironment of the animal. Data were obtained from 25 distinct preparations, upon 13 unique squirrels, totaling 1385 recording days. Fox squirrels exhibited robust daily rhythmicity of locomotor activity, comparable to that of laboratory rats and gerbils. The animals were clearly diurnal, with a predominantly unimodal activity pattern, although individual squirrels occasionally exhibited bimodal patterns, particularly in the spring and summer. Even during the short days of winter (9 hours), the squirrels typically left the nest after dawn and returned before dusk, spending only about 7 hours out of the nest each day. Although the duration of the daily active phase did not change with the seasons, the squirrels exited the nest earlier in the day when the days became longer in the summer and exited the nest later in the day when the days became shorter in the winter, thus tracking dawn along the seasons. During the few hours each day spent outside the nest, fox squirrels seemed to spend most of the time sitting or lying. These findings suggest that fox squirrels may have adopted a slow life history strategy.
description: Collar temperature is in °C
DOI: 10.6084/m9.figshare.22237726
title: Chromosome-level genome assembly of an endangered plant Prunus mongolica using PacBio and Hi-C technologies

description: <em>Prunus mongolica</em> is an ecologically and economically important xerophytic tree native to Northwest China. Here, we report a high-quality, chromosome-level <em>P. mongolica</em> genome assembly integrating PacBio high-fidelity sequencing and Hi-C technology. The assembled genome was 233.17 Mb in size, with 98.89% assigned to eight pseudochromosomes. The genome had contig and scaffold N50s of 24.33 Mb and 26.54 Mb, respectively, a BUSCO completeness score of 98.76%, and CEGMA indicated that 98.47% of the assembled genome was reliably annotated. The genome contained a total of 88.54 Mb (37.97%) of repetitive sequences and 23,798 protein-coding genes.
DOI: 10.6084/m9.figshare.22237726.v1
title: Chromosome-level genome assembly of an endangered plant Prunus mongolica using PacBio and Hi-C technologies

description: <em>Prunus mongolica</em> is an ecologically and economically important xerophytic tree native to Northwest China. Here, we report a high-quality, chromosome-level <em>P. mongolica</em> genome assembly integrating PacBio high-fidelity sequencing and Hi-C technology. The assembled genome was 233.17 Mb in size, with 98.89% assigned to eight pseudochromosomes. The genome had contig and scaffold N50s of 24.33 Mb and 26.54 Mb, respectively, a BUSCO completeness score of 98.76%, and CEGMA indicated that 98.47% of the assembled genome was reliably annotated. The genome contained a total of 88.54 Mb (37.97%) of repetitive sequences and 23,798 protein-coding genes.
DOI: 10.5281/zenodo.7663349
title: Himawari-8/AHI hourly clear-sky land surface temperature and emissivity dataset (2021.1-2021.4)

description: This is the clear-sky LST and LSE dataset (0.02°, hourly) derived by the iTES algorithm (Zhou and Cheng, 2020) from the Himawari-8 AHI thermal infrared data. A broadband emissivity (BBE, 8-13.5μm) dataset was also produced using the derived AHI narrowband LSEs (Cheng et al. 2013). The in-situ validation results show that the bias and RMSE of the retrieved AHI LST are 0.19 and 2.93 K in the daytime, and −0.43 and 1.95 K in the nighttime, respectively. The bias and RMSE of the retrieved LSE are less than 0.005 and 0.014, respectively, compared with the latest MYD21 LSE. The time period of this dataset is 2016-2021, covering the AHI 0.02° nominal fixed grid (60°N∼60°S, 80°E∼160°W). This is the LST&E dataset in 2021.01-2021.04 <strong>Dataset Characteristics:</strong> Spatial Coverage: East Asia and Western Pacific regions (60°N∼60°S, 80°E-140°E) Temporal Coverage: 2021.01-2021.04 Spatial Resolution: 0.02 ° Temporal Resolution: one hour Projection: GCS_WGS_1984 Data Format: NetCDF <strong>Citation </strong>(Please cite these papers when using the data)<strong>:</strong> Zhou, S., & Cheng, J. (2020). An Improved Temperature and Emissivity Separation Algorithm for the Advanced Himawari Imager. <em>IEEE Transactions on Geoscience and Remote Sensing, 58</em>, 7105-7124 Cheng, J., et al. (2013). Estimating the Optimal Broadband Emissivity Spectral Range for Calculating Surface Longwave Net Radiation. <em>IEEE Geoscience and Remote Sensing Letters, 10</em>, 401-40 If you have any questions, please contact Prof. Jie Cheng (Jie_Cheng@bnu.edu.cn).
DOI: 10.5281/zenodo.7663348
title: Himawari-8/AHI hourly clear-sky land surface temperature and emissivity dataset (2021.1-2021.4)

description: This is the clear-sky LST and LSE dataset (0.02°, hourly) derived by the iTES algorithm (Zhou and Cheng, 2020) from the Himawari-8 AHI thermal infrared data. A broadband emissivity (BBE, 8-13.5μm) dataset was also produced using the derived AHI narrowband LSEs (Cheng et al. 2013). The in-situ validation results show that the bias and RMSE of the retrieved AHI LST are 0.19 and 2.93 K in the daytime, and −0.43 and 1.95 K in the nighttime, respectively. The bias and RMSE of the retrieved LSE are less than 0.005 and 0.014, respectively, compared with the latest MYD21 LSE. The time period of this dataset is 2016-2021, covering the AHI 0.02° nominal fixed grid (60°N∼60°S, 80°E∼160°W). This is the LST&E dataset in 2021.01-2021.04 <strong>Dataset Characteristics:</strong> Spatial Coverage: East Asia and Western Pacific regions (60°N∼60°S, 80°E-140°E) Temporal Coverage: 2021.01-2021.04 Spatial Resolution: 0.02 ° Temporal Resolution: one hour Projection: GCS_WGS_1984 Data Format: NetCDF <strong>Citation </strong>(Please cite these papers when using the data)<strong>:</strong> Zhou, S., & Cheng, J. (2020). An Improved Temperature and Emissivity Separation Algorithm for the Advanced Himawari Imager. <em>IEEE Transactions on Geoscience and Remote Sensing, 58</em>, 7105-7124 Cheng, J., et al. (2013). Estimating the Optimal Broadband Emissivity Spectral Range for Calculating Surface Longwave Net Radiation. <em>IEEE Geoscience and Remote Sensing Letters, 10</em>, 401-40 If you have any questions, please contact Prof. Jie Cheng (Jie_Cheng@bnu.edu.cn).
DOI: 10.6084/m9.figshare.22238434
title: Hypervolume estimation for the trait space of the flockssubset_2000_random from Neotropical mixed-species bird flocks in a community context

description: Following the best practices recommended in Mammola et al. (2018) and to facilitate repeatability, we included the hypervolume objects
DOI: 10.6084/m9.figshare.22238434.v1
title: Hypervolume estimation for the trait space of the flockssubset_2000_random from Neotropical mixed-species bird flocks in a community context

description: Following the best practices recommended in Mammola et al. (2018) and to facilitate repeatability, we included the hypervolume objects
DOI: 10.6084/m9.figshare.22238437
title: Hypervolume estimation for the trait space of the flocks from Neotropical mixed-species bird flocks in a community context

description: Following the best practices recommended in Mammola et al. (2018) and to facilitate repeatability, we included the hypervolume objects
DOI: 10.6084/m9.figshare.22238437.v1
title: Hypervolume estimation for the trait space of the flocks from Neotropical mixed-species bird flocks in a community context

description: Following the best practices recommended in Mammola et al. (2018) and to facilitate repeatability, we included the hypervolume objects
DOI: 10.6084/m9.figshare.22238440
title: Hypervolume estimation for the trait space of the community_subset_2000_random from Neotropical mixed-species bird flocks in a community context

description: Following the best practices recommended in Mammola et al. (2018) and to facilitate repeatability, we included the hypervolume objects
DOI: 10.6084/m9.figshare.22238440.v1
title: Hypervolume estimation for the trait space of the community_subset_2000_random from Neotropical mixed-species bird flocks in a community context

description: Following the best practices recommended in Mammola et al. (2018) and to facilitate repeatability, we included the hypervolume objects
DOI: 10.6084/m9.figshare.22238443
title: observer_reliability_statistics_no_id_for_reviewers_only.xlsm from Neotropical mixed-species bird flocks in a community context

description: Mixed-species flocks are an important component of bird communities, particularly in the Neotropics, where flocks reach their highest diversity. The extent to which mixed-species flocks represent unique functional or ecological roles within communities, and how these attributes change over environmental gradients, however, is not well understood. We use a trait-based approach to examine functional aspects of flocking assemblages as they relate to those observed in the larger avian community across a 3000 m elevational gradient. Our results reveal similar ecological strategies among flocking species and the communities in which they occur, at the scale of the regional pool and across elevations. Trait variation in flocking and non-flocking assemblages is structured along two major axes defined by size- and resource-related traits. The trait space occupied by flocking species, however, represents only half (51%) that of the larger community. Similarly, the trait space of flocks across elevations is restricted compared to non-flocking species. The shared trait space across flock types represents small-bodied invertivores foraging in lower forest strata, traits associated with increased vulnerability to predation. The concentration of flocking species in functional trait space suggests high niche packing and either more overlap in ecological strategies or more finely divided niches relative to non-flocking species.This article is part of the theme issue ‘Mixed-species groups and aggregations: shaping ecological and behavioural patterns and processes’.