cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7908914
title: Confocal and STED Live F-actin dataset

description: Paired confocal and STED images of F-actin nanostructures in living neurons using the far-red fluorogenic dye SiR-Actin. This dataset was used to train and test the TA-GAN model for confocal-to-STED super-resolution of axonal and dendritic F-actin in living neurons (Resolution Enhancement with a Task-Assisted GAN to Guide Optical Nanoscopy Image Analysis and Acquisition). All images : 20 nm/pixel. Folders:<br> - train : 753 pairs of confocal/STED images (varying sizes)<br> - valid : 47 pairs of confocal/STED images (varying sizes)<br> - test_initial & test_final : 84 confocal/STED pairs acquired before (initial) and 84 acquired after (final) control sequences where 15 confocal images of the full FOV (500 x 500 pixels = 10μm x 10μm) were acquired at 1 frame/minute. In addition to the confocal image, a sub-region (100 x 100 pixels = 2μm x 2μm) was selected outside the central ROI (300 x 300 pixels = 6μm x 6μm) and acquired with the STED modality at every time step; the signal decrease due to photobleaching effects can therefore be more prononced in the border region outside the central ROI.<br> - test_series : contains 149 series of images acquired with TA-GAN assistance using the change-based Dice coefficient threshold or the variability-based threshold. The test_series folder contains folders with names corresponding to "[date of acquisition]_cs[coverslip number]_ROI[selected region number]". Each folder contains three subfolders : input, full_STED, and initial_final_confocal. <br> - Input : this folder contains three-channel images for each of the 15 frames in the series. The first channel is the full FOV confocal image (10μm x 10μm), the second channel is the STED sub-region (2μm x 2μm) with zero-padding to match the shape of the FOV, and the third channel is a decision map of 0s and 1s, with the 1s indicating the position in the FOV of the STED sub-region.<br> - full_STED : this folder contains all the STED FOVs (10μm x 10μm) acquired when triggered by the TA-GAN assistance. The number of full_STED FOVs varies from 0 to 15 per region, with a mean of 2.8 STED images per series. The full FOV STED images acquired before (initialSTED.tif) and after (finalSTED.tif) the series of 15 frames are also included.<br> - initial_final_confocal : The full FOV confocal images acquired before (initialConfocal.tif) and after (finalConfocal.tif) the series of 15 frames.
description: {"references": ["Bouchard, C., Wiesner, T., Desch\u00eanes, A., Bilodeau, A., Gagn\u00e9, C., & Lavoie-Cardinal, F. (2021). Resolution Enhancement with a Task-Assisted GAN to Guide Optical Nanoscopy Image Analysis and Acquisition. bioRxiv, 2021-07."]}
DOI: 10.5281/zenodo.7908913
title: Confocal and STED Live F-actin dataset

description: Paired confocal and STED images of F-actin nanostructures in living neurons using the far-red fluorogenic dye SiR-Actin. This dataset was used to train and test the TA-GAN model for confocal-to-STED super-resolution of axonal and dendritic F-actin in living neurons (Resolution Enhancement with a Task-Assisted GAN to Guide Optical Nanoscopy Image Analysis and Acquisition). All images : 20 nm/pixel. Folders:<br> - train : 753 pairs of confocal/STED images (varying sizes)<br> - valid : 47 pairs of confocal/STED images (varying sizes)<br> - test_initial & test_final : 84 confocal/STED pairs acquired before (initial) and 84 acquired after (final) control sequences where 15 confocal images of the full FOV (500 x 500 pixels = 10μm x 10μm) were acquired at 1 frame/minute. In addition to the confocal image, a sub-region (100 x 100 pixels = 2μm x 2μm) was selected outside the central ROI (300 x 300 pixels = 6μm x 6μm) and acquired with the STED modality at every time step; the signal decrease due to photobleaching effects can therefore be more prononced in the border region outside the central ROI.<br> - test_series : contains 149 series of images acquired with TA-GAN assistance using the change-based Dice coefficient threshold or the variability-based threshold. The test_series folder contains folders with names corresponding to "[date of acquisition]_cs[coverslip number]_ROI[selected region number]". Each folder contains three subfolders : input, full_STED, and initial_final_confocal. <br> - Input : this folder contains three-channel images for each of the 15 frames in the series. The first channel is the full FOV confocal image (10μm x 10μm), the second channel is the STED sub-region (2μm x 2μm) with zero-padding to match the shape of the FOV, and the third channel is a decision map of 0s and 1s, with the 1s indicating the position in the FOV of the STED sub-region.<br> - full_STED : this folder contains all the STED FOVs (10μm x 10μm) acquired when triggered by the TA-GAN assistance. The number of full_STED FOVs varies from 0 to 15 per region, with a mean of 2.8 STED images per series. The full FOV STED images acquired before (initialSTED.tif) and after (finalSTED.tif) the series of 15 frames are also included.<br> - initial_final_confocal : The full FOV confocal images acquired before (initialConfocal.tif) and after (finalConfocal.tif) the series of 15 frames.
description: {"references": ["Bouchard, C., Wiesner, T., Desch\u00eanes, A., Bilodeau, A., Gagn\u00e9, C., & Lavoie-Cardinal, F. (2021). Resolution Enhancement with a Task-Assisted GAN to Guide Optical Nanoscopy Image Analysis and Acquisition. bioRxiv, 2021-07."]}
DOI: 10.5281/zenodo.7982346
title: Labeled sampling of related discussion posts

description: This is a labeled sampling of (uN)related discussion posts. Each file contains master_discussion_id;target_discussion_id;R or N The label R means that the master_discussion and target_discussion are related. The label N means that the master_discussion and target_discussion are unrelated. Projects: Gatsby, Homebrew, and Next.js https://github.com/gatsbyjs/gatsby/discussions/ https://github.com/orgs/Homebrew/discussions/ https://github.com/vercel/next.js/discussions/
DOI: 10.5281/zenodo.7982345
title: Labeled sampling of related discussion posts

description: This is a labeled sampling of (uN)related discussion posts. Each file contains master_discussion_id;target_discussion_id;R or N The label R means that the master_discussion and target_discussion are related. The label N means that the master_discussion and target_discussion are unrelated. Projects: Gatsby, Homebrew, and Next.js https://github.com/gatsbyjs/gatsby/discussions/ https://github.com/orgs/Homebrew/discussions/ https://github.com/vercel/next.js/discussions/
DOI: 10.5519/qd.rdbw3grh
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (595634 records)
DOI: 10.5519/qd.8x2q6fv8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (367998 records)
DOI: 10.6084/m9.figshare.22787735.v3
title: Supplemental Table S5: Number of disease cases of each disease categories included in each disease-fluctuation relationship (DFR) groups, and their proportion to the total number of disease cases and milk fluctuations.

description: Investigating the relationship between fluctuations in daily milk yield as resilience indicators and health traits in Holstein cattle
DOI: 10.6084/m9.figshare.22787750.v2
title: Supplemental Table S7: Estimates of parity and lactation stage fixed effect on milk fluctuation traits.

description: Investigating the relationship between fluctuations in daily milk yield as resilience indicators and health traits in Holstein cattle
DOI: 10.15132/10000204
title: HIC Transplantation

description: Abstract
An anonymised dataset derived from routinely collected data from patients (over 16 years old) who have undergone kidney or pancreas and kidney transplantation after 1 January 2005 and have been followed up in any of the participating centres in the period of observation.
DOI: 10.6084/m9.figshare.23257742
title: Circumference of tree trunks in Poplar tree plantations

description: Circumference of tree trunks at breast height (approximately 140 cm from the ground) in two Poplar tree plantations (approximately 10 and 15 years old plantations) on the outskirts of Nyíradony and respectively Nyírbogát, Hungary. The plantations have the distinct characteristic of minimal human influence after their establishment. The measurements were taken on May 3, 2023. <br> Data from the younger plantation: Filename: Circumference_10y_plantation.csv/Circumference_10y_plantation.xlsx <br> Data from the older plantation: Filename: Circumference_15y_plantation.csv/Circumference_15y_plantation.xlsx <br> The data was measured manually using a standard tailor's tape measure. The circumferences are measured in centimeters. A "0" value in the matrix indicates that the corresponding tree is missing (either dried out or not planted, etc.).
DOI: 10.6084/m9.figshare.23257742.v1
title: Circumference of tree trunks in Poplar tree plantations

description: Circumference of tree trunks at breast height (approximately 140 cm from the ground) in two Poplar tree plantations (approximately 10 and 15 years old plantations) on the outskirts of Nyíradony and respectively Nyírbogát, Hungary. The plantations have the distinct characteristic of minimal human influence after their establishment. The measurements were taken on May 3, 2023. <br> Data from the younger plantation: Filename: Circumference_10y_plantation.csv/Circumference_10y_plantation.xlsx <br> Data from the older plantation: Filename: Circumference_15y_plantation.csv/Circumference_15y_plantation.xlsx <br> The data was measured manually using a standard tailor's tape measure. The circumferences are measured in centimeters. A "0" value in the matrix indicates that the corresponding tree is missing (either dried out or not planted, etc.).
DOI: 10.34992/ehtt-fb57
title: Canadian Arctic 2018 gridT and icemod NEMO 3.6, LIM2 and BLINGv0+DIC data
DOI: 10.3886/e188341
title: ECIN Replication Package for "How certain are we about the role of uncertainty in the economy?"

description: Although the causes and consequences of uncertainty in the US economy have attracted a strong research interest over the past decade, the literature still lacks a consensus on several aspects. To name two matters of debate, it remains unclear whether uncertainty shocks are a source or the result of recessions and whether uncertainty shocks have adverse (or even stimulating) effects on the economy. We find that ambiguous results in these regards can be traced back to the selection of an appropriate identification strategy in structural vector autoregressive (SVAR) models. As a potential solution, we propose an easy-to-employ and agnostic identification approach that utilizes tools of independent component analysis (ICA). In addition, ICA-based identification allows straightforward model augmentation as an elegant means to reconsider the results of some prominent studies that point to realized volatility as the actual trigger of economic slowdowns rather than uncertainty shocks. Overall, we find that both macroeconomic and financial uncertainty are exogenous to business cycle fluctuations and cause economic slowdowns. Moreover, our results show that realized volatility is the result of economic and financial turbulence, not the cause.
DOI: 10.3886/e188341v1
title: ECIN Replication Package for "How certain are we about the role of uncertainty in the economy?"

description: Although the causes and consequences of uncertainty in the US economy have attracted a strong research interest over the past decade, the literature still lacks a consensus on several aspects. To name two matters of debate, it remains unclear whether uncertainty shocks are a source or the result of recessions and whether uncertainty shocks have adverse (or even stimulating) effects on the economy. We find that ambiguous results in these regards can be traced back to the selection of an appropriate identification strategy in structural vector autoregressive (SVAR) models. As a potential solution, we propose an easy-to-employ and agnostic identification approach that utilizes tools of independent component analysis (ICA). In addition, ICA-based identification allows straightforward model augmentation as an elegant means to reconsider the results of some prominent studies that point to realized volatility as the actual trigger of economic slowdowns rather than uncertainty shocks. Overall, we find that both macroeconomic and financial uncertainty are exogenous to business cycle fluctuations and cause economic slowdowns. Moreover, our results show that realized volatility is the result of economic and financial turbulence, not the cause.
DOI: 10.3886/e188341v2
title: ECIN Replication Package for "How certain are we about the role of uncertainty in the economy?"

description: Although the causes and consequences of uncertainty in the US economy have attracted a strong research interest over the past decade, the literature still lacks a consensus on several aspects. To name two matters of debate, it remains unclear whether uncertainty shocks are a source or the result of recessions and whether uncertainty shocks have adverse (or even stimulating) effects on the economy. We find that ambiguous results in these regards can be traced back to the selection of an appropriate identification strategy in structural vector autoregressive (SVAR) models. As a potential solution, we propose an easy-to-employ and agnostic identification approach that utilizes tools of independent component analysis (ICA). In addition, ICA-based identification allows straightforward model augmentation as an elegant means to reconsider the results of some prominent studies that point to realized volatility as the actual trigger of economic slowdowns rather than uncertainty shocks. Overall, we find that both macroeconomic and financial uncertainty are exogenous to business cycle fluctuations and cause economic slowdowns. Moreover, our results show that realized volatility is the result of economic and financial turbulence, not the cause.
DOI: 10.5517/ccdc.csd.cc28rp0r
title: CCDC 2108124: Experimental Crystal Structure Determination

description: Related Article: Longlong Song, Lulu Xiong, Dan Ni, Weixiong Chen, Jian Ji, Jian Xue, Xuwen Chen, Xiang Wu, Xiao He, Shunying Liu|2023|ACS Catalysis|13|6509|doi:10.1021/acscatal.2c05824
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c3q29
title: CCDC 2178310: Experimental Crystal Structure Determination

description: Related Article: Zeqing Duan, Min Liu, Bing Zheng, Yi Tang, Juan Du, Lei Wang, Songcheng Yu, Yongjun Wu, Hongchao Guo|2023|Org.Lett.|25|3298|doi:10.1021/acs.orglett.3c01066
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/jeqq8q
title: Colección de Oología del Instituto Nacional de Biodiversidaddel Ecuador (INABIO)

description: Colección de Oología del Instituto Nacional de Biodiversidaddel Ecuador (INABIO), ex Museo Nacional de Ciencias Naturales (MECN).
DOI: 10.34740/kaggle/dsv/5806719
title: Cristiano Ronaldo | All Club Goals
DOI: 10.5517/ccdc.csd.cc2ckxjd
title: CCDC 2191964: Experimental Crystal Structure Determination

description: Related Article: Zeqing Duan, Min Liu, Bing Zheng, Yi Tang, Juan Du, Lei Wang, Songcheng Yu, Yongjun Wu, Hongchao Guo|2023|Org.Lett.|25|3298|doi:10.1021/acs.orglett.3c01066
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f3cvs
title: CCDC 2237575: Experimental Crystal Structure Determination

description: Related Article: Quentin Gaudillat, Anna Krupp, Thibaut Zwingelstein, Vincent Humblot, Carsten Strohmann, Isabelle Jourdain, Michael Knorr, Lydie Viau|2023|Dalton Trans.|52|5859|doi:10.1039/D3DT00683B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f3cwt
title: CCDC 2237576: Experimental Crystal Structure Determination

description: Related Article: Quentin Gaudillat, Anna Krupp, Thibaut Zwingelstein, Vincent Humblot, Carsten Strohmann, Isabelle Jourdain, Michael Knorr, Lydie Viau|2023|Dalton Trans.|52|5859|doi:10.1039/D3DT00683B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f5yxh
title: CCDC 2240057: Experimental Crystal Structure Determination

description: Related Article: Jie Zhu, Menghua Xu, Baihui Gong, Aijun Lin, Shang Gao|2023|Org.Lett.|25|3271|doi:10.1021/acs.orglett.3c01007
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f76ws
title: CCDC 2241265: Experimental Crystal Structure Determination

description: Related Article: Gal Segalovich-Gerendash, Mark Baranov, N. Gabriel Lemcoff, Ravindra S. Phatake|2023|Organometallics|42|825|doi:10.1021/acs.organomet.3c00093
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ffyqk
title: CCDC 2247739: Experimental Crystal Structure Determination

description: Related Article: Victor A. Brotsman, Nadezhda B. Tamm, Ilya N. Ioffe, Andrei A. Eliseev, Alexey A. Goryunkov, Konstantin A. Lyssenko, Sergey I. Troyanov|2023|Dalton Trans.|52|6244|doi:10.1039/D3DT00887H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ffyrl
title: CCDC 2247740: Experimental Crystal Structure Determination

description: Related Article: Victor A. Brotsman, Nadezhda B. Tamm, Ilya N. Ioffe, Andrei A. Eliseev, Alexey A. Goryunkov, Konstantin A. Lyssenko, Sergey I. Troyanov|2023|Dalton Trans.|52|6244|doi:10.1039/D3DT00887H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/5806758
title: CS: GO - Map identification
DOI: 10.15132/10000205
title: Tayside Bowel Screening Dataset

description: Abstract
NHS Tayside health board bowel screening program.

Documentation
From NHS Tayside health board bowel sceening program. Covers Pilot and Programme period. Pilot runs from Mar 2000 to mid-2007. Programme runs from 2007 onwards.
DOI: 10.6084/m9.figshare.21674462
title: Data table 3 - Detailed information of the rare and Pathogenic/Likely pathogenic variants found in the cohort

description: Objectives: Inborn error of immunity (IEI) comprises a broad group of inherited immunological disorders that usually display an overlap in many clinical manifestations challenging their diagnosis. The identification of disease-causing variants comprises the gold-standard approach to ascertain IEI diagnosis. The efforts to increase the availability of clinically relevant genomic data for these disorders constitute an important improvement in the study of rare genetic disorders. This work aims to make available whole-exome sequencing (WES) data of Brazilian patients' suspicion of IEI without a genetic diagnosis. We foresee a broad use of this dataset by the scientific community in order to provide a more accurate diagnosis of IEI disorders.Data description: Twenty singleton unrelated patients treated at four different hospitals in the state of Rio de Janeiro, Brazil were enrolled in our study. Half of the patients were male with mean ages of 9±3, while females were 12±10 years old. The WES was performed in the Illumina NextSeq platform with at least 90% of sequenced bases with a minimum of 30 reads depth. Each sample had an average of 20,274 variants, comprising 116 classified as rare pathogenic or likely pathogenic according to ACMG guidelines. The genotype-phenotype association was impaired by the lack of detailed clinical and laboratory information, besides the unavailability of molecular and functional studies which, comprise the limitations of this study. Overall, the access to clinical exome sequencing data is limited, challenging exploratory analyses and the understanding of genetic mechanisms underlying disorders. Therefore, by making these data available, we aim to increase the number of WES data from Brazilian samples despite contributing to the study of monogenic IEI-disorders. <br>