cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12795752
title: A. Dunst Network and Table Dialectics of Liberation.zip

description: CSV- file for and PNG image of social network for the "Congress on the Dialectics of Liberation" in London, July 15-30, 1967
DOI: 10.5281/zenodo.12795753
title: A. Dunst Network and Table Dialectics of Liberation.zip

description: CSV- file for and PNG image of social network for the "Congress on the Dialectics of Liberation" in London, July 15-30, 1967
DOI: 10.5517/ccdc.csd.cc2bsx35
title: CCDC 2168887: Experimental Crystal Structure Determination

description: Related Article: An-Na Chen, Yan-Ling Deng, Shu-Sheng Xin, Zhi-Qiang Liu, Li-Juan Zhong, Chun-Yang Pan|2024|J.Mater.Chem.C|12|9939|doi:10.1039/D4TC01298D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g2clj
title: CCDC 2266397: Experimental Crystal Structure Determination

description: Related Article: D.V. Geetha, C.L. Sharath, N. Shivakumar, B.N. Lakshminarayana, K.M. Chandini, K. Balakrishna|2024|J.Mol.Struct.|1317|139016|doi:10.1016/j.molstruc.2024.139016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24vkyj
title: CCDC 1991748: Experimental Crystal Structure Determination

description: Related Article: Changting Wen, Guojin Sun, Lang Liu, Jun Zhang, Mengyao She, Zheng Yang, Ping Liu, Shengyong Zhang, Jianli Li|2024|Green Chemistry|26|7944|doi:10.1039/D4GC02211D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g3qgs
title: CCDC 2267695: Experimental Crystal Structure Determination

description: Related Article: Yogesh S. Tingare, Ya-Chun Hsu, Jyun-Dai Lin, Chaochin Su, Wan-Chun Wang, Sheng-Han Wang, Shi-Yun Lai, Zhi-Ting Wu, Ja-Hon Lin, Hsiou-Hsuan Wang, Wen-Ren Li|2024|J.Mater.Chem.C|12|10145|doi:10.1039/D4TC00688G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dplh6
title: CCDC 2225288: Experimental Crystal Structure Determination

description: Related Article: Xia Li, Debobroto Sensharma, Leigh Loots, Shubo Geng, Sousa Javan Nikkhah, En Lin, Volodymyr Bon, Wansheng Liu, Zhifang Wang, Tao He, Soumya Mukherjee, Matthias Vandichel, Stefan Kaskel, Leonard J. Barbour, Zhenjie Zhang, Michael J. Zaworotko|2024|J.Am.Chem.Soc.|146|18387|doi:10.1021/jacs.4c03555
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dplg5
title: CCDC 2225287: Experimental Crystal Structure Determination

description: Related Article: Xia Li, Debobroto Sensharma, Leigh Loots, Shubo Geng, Sousa Javan Nikkhah, En Lin, Volodymyr Bon, Wansheng Liu, Zhifang Wang, Tao He, Soumya Mukherjee, Matthias Vandichel, Stefan Kaskel, Leonard J. Barbour, Zhenjie Zhang, Michael J. Zaworotko|2024|J.Am.Chem.Soc.|146|18387|doi:10.1021/jacs.4c03555
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gmzkn
title: CCDC 2283322: Experimental Crystal Structure Determination

description: Related Article: James H. W. LaFortune, Ala'aeddeen Swidan, Jeffrey S. Ovens, Zheng-Wang Qu, Stefan Grimme, Michael A. Land, Charles L. B. Macdonald|2023|Chem.-Eur.J.|29|e202302558|doi:10.1002/chem.202302558
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gmzsw
title: CCDC 2283329: Experimental Crystal Structure Determination

description: Related Article: James H. W. LaFortune, Ala'aeddeen Swidan, Jeffrey S. Ovens, Zheng-Wang Qu, Stefan Grimme, Michael A. Land, Charles L. B. Macdonald|2023|Chem.-Eur.J.|29|e202302558|doi:10.1002/chem.202302558
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gqvgj
title: CCDC 2286078: Experimental Crystal Structure Determination

description: Related Article: James H. W. LaFortune, Ala'aeddeen Swidan, Jeffrey S. Ovens, Zheng-Wang Qu, Stefan Grimme, Michael A. Land, Charles L. B. Macdonald|2023|Chem.-Eur.J.|29|e202302558|doi:10.1002/chem.202302558
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gqvhk
title: CCDC 2286079: Experimental Crystal Structure Determination

description: Related Article: James H. W. LaFortune, Ala'aeddeen Swidan, Jeffrey S. Ovens, Zheng-Wang Qu, Stefan Grimme, Michael A. Land, Charles L. B. Macdonald|2023|Chem.-Eur.J.|29|e202302558|doi:10.1002/chem.202302558
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.21227/byq2-0445
title: SDTB dataset

description: The proposed SDTB dataset is collected from microscopic testicular tissue sections of 15 patients diagnosed with azoospermia. It simulates the process of selecting high-quality sperm in a testicular puncture scenario for further infertility diagnosis and treatment. Specifically, a testicular puncture is performed on these patients, followed by cleansing and shredding of the tubule tissue. The samples are then examined under a Nikon ECLIPSS Ti microscope at 200× magnification. The annotations of sperm are initially conducted by one physician and subsequently reviewed and adjusted by another physician. From each patient, 45 to 148 images with 193 to 755 sperm instances are collected. Each image is 1320 × 1080 pixels, which we further resize and pad to 640 × 640 pixels.
DOI: 10.15468/dl.by8zdg
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Neofelis diardi (G.Cuvier, 1823)"
 ]
}

 The dataset includes 68 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032727-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12795728
title: Organoid tiny dataset for stitching (SearchFirst, tif input)

description: Dataset acquired on Yokogawa CV8000 on 2024.06.07 by Nicole Repina, Friedrich Miescher Institute for Biomedical Research

Dataset contains 11 fields of view (each 1000 x 1000 pix) acquired with SearchFirst*. Touching fields have 50 pix overlap. 

60x water objective, 2x2 binning, zyx spacing (6, 0.21667, 0.21667) um per pixel. Each field of view has 6 z-slices.

Mouse small intestinal organoids (day 4) immunostained with the following dyes (2 fluorescence channels):

Channel 1 (C01, 405nm) = DAPI nuclear stainChannel 2 (C02, 488nm) = B-catenin membrane stain

*In SearchFirst, the sample is first imaged with a first-pass low-magnification objective (e.g. 4x). An object detection algorithm is then used to identify object-containing regions. Next, the second-pass acquisition is performed with a higher magnification objective that only acquires object-containing regions. The objects are thus imaged not in a tiled grid. Further, some fields may be standalone, while others may have one or more touching fields that are acquired with the specified pixel overlap.
DOI: 10.5281/zenodo.12795729
title: Organoid tiny dataset for stitching (SearchFirst, tif input)

description: Dataset acquired on Yokogawa CV8000 on 2024.06.07 by Nicole Repina, Friedrich Miescher Institute for Biomedical Research

Dataset contains 11 fields of view (each 1000 x 1000 pix) acquired with SearchFirst*. Touching fields have 50 pix overlap. 

60x water objective, 2x2 binning, zyx spacing (6, 0.21667, 0.21667) um per pixel. Each field of view has 6 z-slices.

Mouse small intestinal organoids (day 4) immunostained with the following dyes (2 fluorescence channels):

Channel 1 (C01, 405nm) = DAPI nuclear stainChannel 2 (C02, 488nm) = B-catenin membrane stain

*In SearchFirst, the sample is first imaged with a first-pass low-magnification objective (e.g. 4x). An object detection algorithm is then used to identify object-containing regions. Next, the second-pass acquisition is performed with a higher magnification objective that only acquires object-containing regions. The objects are thus imaged not in a tiled grid. Further, some fields may be standalone, while others may have one or more touching fields that are acquired with the specified pixel overlap.
DOI: 10.15468/dl.bd2q3x
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (ARG, CHL, PRY, URY, FLK, BRA.21_1, BRA.16_1, BRA.24_1)",
 "TaxonKey is Dieffenbachia aglaonematifolia Engl."
 ]
}

 The dataset includes 31 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032728-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bn2ebj
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helichrysum mannii Hook.fil."
 ]
}

 The dataset includes 42 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032729-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgmghh
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Neofelis nebulosa (Griffith, 1821)"
 ]
}

 The dataset includes 164 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032730-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x62u87
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (ARG, CHL, PRY, URY, FLK, BRA.21_1, BRA.16_1, BRA.24_1)",
 "TaxonKey is Dracontium margaretae Bogner"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032731-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7303/syn61831984
title: PDAC_Spatial_transcriptomics
DOI: 10.5281/zenodo.12795787
title: Organoid tiny dataset for stitching (SearchFirst, ome-zarr)

description: Ome-zarr dataset that is the output of raw tifs (doi 10.5281/zenodo.12795728) processed by Fractal task (see .json file). 

Dataset acquired on Yokogawa CV8000 on 2024.06.07 by Nicole Repina, Friedrich Miescher Institute for Biomedical Research

Dataset contains 11 fields of view (each 1000 x 1000 pix) acquired with SearchFirst*. Touching fields have 50 pix overlap. 

60x water objective, 2x2 binning, zyx spacing (6, 0.21667, 0.21667) um per pixel. Each field of view has 6 z-slices.

Mouse small intestinal organoids (day 4) immunostained with the following dyes (2 fluorescence channels):

Channel 1 (C01, 405nm) = DAPI nuclear stainChannel 2 (C02, 488nm) = B-catenin membrane stain

*In SearchFirst, the sample is first imaged with a first-pass low-magnification objective (e.g. 4x). An object detection algorithm is then used to identify object-containing regions. Next, the second-pass acquisition is performed with a higher magnification objective that only acquires object-containing regions. The objects are thus imaged not in a tiled grid. Further, some fields may be standalone, while others may have one or more touching fields that are acquired with the specified pixel overlap.
DOI: 10.5281/zenodo.12795788
title: Organoid tiny dataset for stitching (SearchFirst, ome-zarr)

description: Ome-zarr dataset that is the output of raw tifs (doi 10.5281/zenodo.12795728) processed by Fractal task (see .json file). 

Dataset acquired on Yokogawa CV8000 on 2024.06.07 by Nicole Repina, Friedrich Miescher Institute for Biomedical Research

Dataset contains 11 fields of view (each 1000 x 1000 pix) acquired with SearchFirst*. Touching fields have 50 pix overlap. 

60x water objective, 2x2 binning, zyx spacing (6, 0.21667, 0.21667) um per pixel. Each field of view has 6 z-slices.

Mouse small intestinal organoids (day 4) immunostained with the following dyes (2 fluorescence channels):

Channel 1 (C01, 405nm) = DAPI nuclear stainChannel 2 (C02, 488nm) = B-catenin membrane stain

*In SearchFirst, the sample is first imaged with a first-pass low-magnification objective (e.g. 4x). An object detection algorithm is then used to identify object-containing regions. Next, the second-pass acquisition is performed with a higher magnification objective that only acquires object-containing regions. The objects are thus imaged not in a tiled grid. Further, some fields may be standalone, while others may have one or more touching fields that are acquired with the specified pixel overlap.
DOI: 10.5281/zenodo.10979154
title: Patient Database - Fungitect

description: Excel table used as patient database including the serial samples taken at each febrile neutropenic episode with information regarding age, gender, underlying disease, IFD scoring, microbiological analysis (bacteria, virus, fungi), prophylaxis and treatment.
DOI: 10.5281/zenodo.10979155
title: Patient Database - Fungitect

description: Excel table used as patient database including the serial samples taken at each febrile neutropenic episode with information regarding age, gender, underlying disease, IFD scoring, microbiological analysis (bacteria, virus, fungi), prophylaxis and treatment.
DOI: 10.5281/zenodo.12795797
title: Patient Database - Fungitect

description: Excel table used as patient database including the serial samples taken at each febrile neutropenic episode with information regarding age, gender, underlying disease, IFD scoring, microbiological analysis (bacteria, virus, fungi), prophylaxis and treatment.
DOI: 10.15468/dl.kvcf8e
title: Occurrence Download

description: A dataset containing 300 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceriops zippeliana Blume"
 ]
}

 The dataset includes 300 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032733-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gx6n5j
title: Occurrence Download

description: A dataset containing 244541 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-120.63591 57.21183,-98.44185 57.21183,-98.44185 71.36281,-120.63591 71.36281,-120.63591 57.21183))"
 ]
}

 The dataset includes 244541 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032732-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jtncj
title: Occurrence Download

description: A dataset containing 4532 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Biological records of potentially host plants of mexican wild bees identified from iNaturalist"
 ]
}

 The dataset includes 4532 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032736-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7jc967
title: Occurrence Download

description: A dataset containing 1470 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pleopeltis pleopeltifolia (Raddi) Alston"
 ]
}

 The dataset includes 1470 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032735-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00005170.1
title: Available IPD datapackage for study 'A Phase I/II Open Label Study of the 17α-Hydroxylase/ C17,20 Lyase Inhibitor, Abiraterone Acetate in Patients With Prostate Cancer Who Have Failed Hormone Therapy'

description: The purpose of this study is to determine the maximum tolerated dose and evaluate the safety, tolerability, and activity at the recommended dose (maximum tolerated dose [MTD]) of abiraterone acetate (also known as CB7630) in participants with hormone refractory prostate (gland that makes fluid that aids movement of sperm) cancer (HRPC).
DOI: 10.15468/dl.vm759n
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mikaniopsis maitlandii C.D.Adams"
 ]
}

 The dataset includes 44 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032738-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.97q5pm
title: Occurrence Download

description: A dataset containing 258 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Distribution of a crested tit (Lophophanes cristatus) in Kharkiv Region, Ukraine"
 ]
}

 The dataset includes 258 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032737-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/c63dfd5cf905769434bfc75faa05bb9e
title: Hallwood Floodplain and Side Channel Restoration Project - Salmonid Redd Surveys on the Yuba River 2014-2023

description: Cramer Fish Sciences (CFS), cbec, inc. ecoengineering, and South Yuba River Citizen’s League, funded and directed by the United States Fish and Wildlife Service’s Anadromous Fish Restoration Program (USFWS AFRP) and Yuba Water Agency, teamed to plan, design, monitor, perform regulatory compliance for the Hallwood Side Channel and Floodplain Restoration Project (Project) on the Yuba River, California. The Project is designed to restore and enhance ecosystem processes, with a primary focus on improving productive juvenile salmonid rearing habitat to increase natural production of fall and spring-run Chinook Salmon ( Oncorhynchus tshawytscha
) and steelhead ( O. mykiss
) in the Yuba River. The Project would enhance and/or create up to 157 acres of seasonally inundated riparian floodplain habitats, 1.7 miles of perennial side and alcove channels, and more than 6.1 miles of seasonal side channels. The design approach focuses on removing unnatural constraints (such as a mid-river training wall and very coarse surface materials left from mining activities) in order to allow natural river and floodplain processes to function. Construction planning efforts include multi-year phasing to remove about 3.2 million cubic yards of material from the site while optimizing habitat establishment in early years and minimizing disturbance to existing high quality riparian and aquatic habitat.
 The Project included a robust monitoring program that measured the effect of restoration on a range of ecological parameters thought to influence salmonid habitat use and productivity and riparian ecosystem function using a Before-After-Control-Impact study framework. Specifically, we monitored salmonid and non-native predator density, juvenile salmonid growth and residence time, predation, invertebrate prey (drift) density and biomass, and changes in acreage of a range of habitat types, including terrestrial and aquatic vegetation. We also examined factors influencing natural riparian tree recruitment following restoration.
 Although restoration actions focused on salmonid rearing habitat, spawning activity was observed on several occasions before and after site construction and was documented to demonstrate utilization by adult Chinook Salmon and steelhead. In 2022 and 2023, additional surveys were conducted in the main channel to confirm that the project did not reduce overall spawning within the project reach.