cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/f6tbhy
title: Lidar data acquired by drone at the Bordeaux observatory (Floirac)

description: Acquisition date : 2022/07/06 Sensor :Yellowscan, Surveyor - GNSS-inertial station: Applanix APX-15 UAV - Lidar: Velodyne VLP16 (Puck) : Wavelength: 905 nm / 300,000 pulses per second (300 kHz) / 2 echoes per pulse / Angle of view: 360 deg - Accuracy: 4cm Vector: DJI Matrice 600 Pro drone Flight conditions : - Trajectory design: double grid, distance between lines: 40 m - Speed: 5m/s - Flight height: 50m above ground level, constrained by IGN DTM at 5m spatial resolution -Flight planning software: UGCS-4.0.134 Pre-processing software : - Applanix POSPac UAV 8.4: trajectory post-processing based on the UAV's GNSS inertial unit data, using a reference GNSS base station. The correction solution for each trajectory is exported as an ASCII SBET (Smoothed Best Estimated Trajectory) file. - Yellowscan CloudStation V2106.0.0: The SBET file is integrated into the software to generate point clouds in .las format projected in RGF93/Lambert 93.
DOI: 10.57745/f8oisy
title: Communautés d'insectes et qualité des grumes

description: Les « ambrosia beetles » forment un groupe d’insectes rassemblant des espèces partageant un mode de vie commun. Les adultes s’attaquent généralement à des arbres affaiblis. Ils creusent dans les tissus ligneux de leur hôte (aubier et/ou bois de cœur) un réseau de galeries et inoculent à l’arbre en parallèle des spores de champignons, notamment d’espèces fongiques symbiotiques, qui vont coloniser le bois. Les adultes déposent leurs œufs dans les galeries et les larves qui en sortent se nourrissent du mycélium des champignons qui tapisse les galeries parentales. Le présent rapport comprend plusieurs objectifs : 1. Mettre à jour les données préliminaires présentées précédemment quant aux insectes collectés dans les grumes mises sous nasse en 2022, en présentant l’ensemble des déterminations réalisées et pas seulement celles des premiers relevés. 2. Présenter les résultats des analyses biochimiques réalisées sur les carottes prélevées sur les grumes en 2022. 3. Présenter les travaux réalisés sur l’analyse des frass issus de piqûre sur chêne.
DOI: 10.57745/fjwnm6
title: Analyses Génétiques

description: Etude des différences de susceptibilité au dépérissement entre Q.Petraea et Q.Robur et leurs hybrides sur 535 chênes afin de génotyper 79 marqueurs génétiques, qui nous ont permis de déterminer de manière robuste l’espèce de chaque arbre, mais aussi son degré d’admixture et de le le relier au dépérissement du chêne
DOI: 10.57745/fq7rua
title: Patterns of variation in equine strongyle community structure

description: Equine strongyles encompass more than 64 species that are responsible for growth retardation and the death of animals. The factors underpinning variation in the structure of equine strongyle community remain unknown. We re-analysed horse-based community data collected in Europe and Australia to investigate the main patterns of strongyle community diversity. Strongyle species diversity and community data from 441 horses either collected after necropsy (46 horses in France and 150 – in Australia), or after horse deworming (48 horses in Poland and 197 – in Ukraine) were considered for analysis. These datasets are made available under this repository.
DOI: 10.57745/frjels
title: Data for replication: Vasseur et al Variability and plasticity in plant allometry are related to changes in ecological strategies

description: Data for replication: Vasseur et al Variability and plasticity in plant allometry are related to changes in ecological strategies
DOI: 10.57745/ftaomv
title: Data set related to the article: "Foraging Behavior Shows Individual-Consistency Over Time, and Predicts Range Use in Slow-Growing Free-Range Male Broiler Chickens"

description: Data from Ferreira et al. Foraging behavior shows individual-consistency over time, and predicts range use in slow-growing free-range male broiler chickens The first sheet contains data obtained during the Ranging behavior measurements. The variable recorded was the individual range visits during periods 2 and 3 (after range access). The second sheet contains data obtained during the Behavioral observations (home environment condition and behavioral assays). The variable recorded were: Standing, Resting, Locomotion, Foraging, Feeding/Drinking, Comfort behaviors, Environment pecking, Positive social pecking, Time Spent Near Conspecifics (Social Motivation Test), Number of Zones Visited, and Foraging (Exploration test). The project PPILOW has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement N°816172.
DOI: 10.57745/gddfrg
title: Chapter 4 Aligning marine biodiversity loss and Life Cycle Impact Assessment in the context of fisheries

description: effect curves and SSD
DOI: 10.57745/gfitot
title: Tree Crown Data - MONTANE OSUG

description: This repository presents data on tree and crown dimension collected on four plots along an elevation gradient in the French Alps. These data have been collected in the framework of the OSUG project MONTANE : Multi-trophic biodiversity and multi-functionality across Alpine Environments. The objective of this project was to describe the forest three-dimensional structure and tree species diversity on several selected Orchamp gradients (see more details in [link](https://orchamp.osug.fr/)). In second step this field data were used to calibrate remote sensing methods to describe forest structure and composition at large scale at the individual level with lidar and hyperspectral data (see Tusa et al. 2020). See more information about the protocol at https://forgemia.inra.fr/georges.kunstler/montane_data#
DOI: 10.57745/hj3fxd
title: Éditions XML-TEI d'extraits des Mémoires de Charlotte Duplessis Mornay, née Arbaleste de la Borde

description: Ces fichiers constituent une édition numérique, encodée en XML-TEI, d'extraits des Mémoires de Madame de Mornay, dans l'édition de 1868-1869 par Henriette de Witt (Paris, Mme Veuve Jules Renouard), à partir du texte établi sur Wikisource à l'adresse https://fr.wikisource.org/wiki/M%C3%A9moires_(Madame_de_Mornay). Ils ont été produits par des groupes d'étudiantes et étudiants du master Littérature, Savoir et Culture Numérique (LSCN), lors d'un sprint numérique conçu par Caroline Trotot, Irène Langlet et Philippe Gambette en 2022-2023. Les extraits font l'objet d'analyses produites par les étudiantes et étudiants sur le site https://arbalestelscn.wordpress.com/. Les fichiers XML-TEI sont balisés à l'aide de balises placeName et persName pour repérer et identifier les noms de personnes et les noms de lieux (avec des identifiants Wikidata).
DOI: 10.57745/jcuylt
title: Restoring the complexity of walking in the elderly and its impact on clinical measures around the risk of falls

description: Dataset collected as part of an experiment conducted during a CIFRE doctoral thesis. The data includes all recorded walking sequences (solo and duo) of the participants and their guides, along with the results of clinical tests.
DOI: 10.57745/jmt4kd
title: Data linked to the population genomic study of the worldwide invasion history of Xylosandrus crassiusculus using RADseq data

description: Native to Southeastern Asia, the ambrosia beetle Xylosandrus crassiusculus is invasive worldwide. Its invasion is favoured by its cryptic lifestyle, symbiosis with a fungus that facilitates a broad range of host plants, and predominant sib-mating reproduction. We used COI and RAD sequencing to i) characterise the worldwide genetic structure of the species, ii) disentangle the origin(s) of the non-native populations on the three invaded continents and (iii) analyse the genetic diversity and pathways within each invaded region. The DNA amount extracted from each individual of Xylosandrus crassiusculus was too small to allow the direct construction of RAD libraries, therefore we carried out whole genome amplification. We used the Genomiphi kit V3 following the manufacturer's procedure. We constructed the Individual RAD libraries as follows. DNA was digested using 250 ng of DNA in 22 µL per sample and 0.5 µL of the PstI-HF enzyme for a total volume of 25 µL. The digested fragments from each specimen were tagged with a unique 5- or 6- bp barcode and a P1 adapter using 1.5 µL of P1 adapter (100 nM) and 0.5 µL of T4 Ligase (2.000.000 U/ml) for a total volume of 30.5 µL. Specimens were then pooled 32 by 32 to create seven libraries. Libraries were sonicated on a Covaris S220 (duty cycle 10%, intensity 5, 200 cycles/burst, duration 75 s) to obtain 300-600 bp fragments. Each library was then tagged with a 5- or 6- nucleotide barcode and a P2 adapter using 1 µL of P2 adapter (10 nM) and 0.5 µL of Quick Ligase (2,000,000 U/ml). The sizing and purification steps were realized using AMPure XP beads (Agencourt). We performed 5 PCR enrichment with 15 cycles (30 ng DNA input, NEB Phusion High-Fidelity PCR Master Mix) for each library to increase fragment diversity. After quality control using the Agilent 2100 Bioanalyzer, the libraries were pooled altogether at an equimolar ratio and sent to MGX-Montpellier GenomiX for sequencing. The library was verified on a Fragment Analyser (Agilent, HS NGS fragment Kit), quantified by qPCR (Kapa Library quantification kit) and sequenced on a SP lane in paired-end 2 x 150 nt mode on a Novaseq6000 (Illumina) according to the manufacturer's instructions. We used the RADIS pipeline (Cruaud et al. 2016) to i) demultiplex individuals using process_radtags (Catchen et al. 2013), ii) homogenise read length and remove a few low-quality bases by trimming reads to 139 bp and iii) remove PCR duplicates using clone_filter (Catchen et al. 2013). Using the BWA-MEM algorithm (Li and Durbin 2009), we mapped the loci obtained on Ambrosiella xylebori's genome (Vanderpool et al. 2018) (accession number: ASM277803v1) to create a blacklist. We did the same with the reference genome GRCh38.p13 of Homo sapiens (accession number: GCA_000001405.28)to create a second blacklist.
DOI: 10.57745/fhnyju
title: Periconia digitata proteins identified by mass spectrometry

description: Periconia digitata proteins identified by mass spectrometry
DOI: 10.57745/fnsyle
title: AGRIBALYSE® fruits et légumes. Compléments à la base de données d’inventaires de cycle de vie et démarche d’écoconception de systèmes de culture

description: Ce travail, réalisé entre 2015 et 2017 dans le cadre du programme AGRIBALYSE, a permis de compléter la base de données d’Inventaires de Cycle de Vie (ICV) des produits agricoles français et de contribuer à l’éco-conception de systèmes de cultures permettant d’améliorer l’empreinte environnementale des fruits et légumes et de sensibiliser les acteurs de la filière. Les nouveaux ICVs produits portent sur dix fruits et légumes parmi les plus consommés en France.
DOI: 10.57745/fohfrp
title: Voltammograms obtained during on-site monitoring of Co and Ni

description: This dataset is the result of the development of an analytical flow system for on-site monitoring of trace metals in a river. The system was deployed on site over a one-month period. Here is an example of the data obtained in 24 hours.
DOI: 10.57745/gjruqg
title: Untargeted metabolomics raw data

description: Semi-polar compounds were extracted, including primary and secondary metabolites, using automated high-throughput ethanol extraction procedures at the MetaboHUB-Bordeaux Metabolome (https://metabolome.u-bordeaux.fr/) from 35 mg of fresh powder, following previously established protocols (Luna et al., 2020). All samples were randomised and injected alternately with extraction blanks (prepared without plant material and used to rule out potential contaminants detected by untargeted metabolomics), and 13 Quality control samples that were prepared by mixing 10 µL from each sample. Quality control samples were injected every 8 runs and used for the correction of signal drift during the analytical batch, and the calculation of coefficients of variation for each metabolomic feature so only the most robust ones are retained for chemometrics (Broadhurst et al., 2018). Untargeted analysis was performed on a UHPLC Vanquish (Thermo Fisher Scientific) coupled to a Q-Exactive Plus mass spectrometer (Thermo Fisher Scientific). One µL of sample was injected on a Phenomenex Luna® Omega Polar C18 column (50 x 2.1 mm, 1.6 µm) at 40°C and a gradient of solvent A (milliQ water – 0.1 % formic acid) and solvent B (acetonitrile – 0.1% formic acid) with a flow of 0.5 mL min-1 was used. The gradient elution was set as follows: 0-11.5 min: 1-40% solvent B; 11.5-12.5 min: 40-95% solvent B; 12.5-14 min: 95% solvent B; 14.5-16 min: 1% solvent B. The mass spectrometry data was acquired in negative polarity at 140.000 FWHM resolution with an automatic gain target at 3e6 and maximum IT of 100 ms. The source conditions were as follow: Spray voltage: 3000 V; Sheath gas: 45 a.u; Auxiliary gas: 15 a.u; Capillary temperature: 320°C; Probe heater temperature: 250°C; S-lens RF level: 100. The experiments were in full scan (mass range: 70-1050 m/z) – data depending MS2 with top three precursors and normalized collision energies of 15, 30, 45 using a dynamic exclusion of 5 s.
DOI: 10.57745/gjzfns
title: Raw physiological data describing 5 accessions' response to combined water and nitrogen mild stress in Arabidopsis thaliana (Xue, Loudet et al.)

description: This dataset corresponds to 1 of 4 datasets produced by Z. Xue, O. Loudet et al. at IJPB (INRAE Versailles-Saclay) to describe the response of 5 Arabidopsis thaliana accessions ('Genotype') to mild water and nitrogen deficiencies and their combination. Plants were grown on the Phenoscope robots at IJPB under different 'Conditions' (W+N+ = control condition; W-N+ = mild drought; W+N- = N deficiency; W-N- = combined drought and N deficiency) for 31 days after sowing (DAS) and sampled at this date. 3 to 5 rosettes from one modality were pooled to constitute one sample. Each row is a sample from one of the 2 independent biological replicates ('Experiment'). Traits estimated are nitrate content, water content (%), several elemental analysis parameters (%C, %N, abundance 'AT' and isotopic discrimination 'd' for 15N/14N and for 13C/12C) and derived traits (Total N and Total C per rosette). Corresponding phenotypic (rosette growth) raw data have been deposited in 'INRAE DataVerse' under accession number DOI:10.57745/E8XYSG. Corresponding transcriptomics raw data have been deposited in 'NCBI GEO' under accession number GSE206890. Corresponding metabolomics raw data have been deposited in 'Metabolomics Workbench' under accession number ST002201. This data is analysed in a paper published in The Plant Cell in 2024 (Xue et al.).
DOI: 10.57745/gzkuzs
title: Ventricular-fold dynamics in human phonation

description: This database of images, audio samples and highspeed videos have been established as a supplementary material to the paper : “Ventricular-fold dynamics in human phonation” Bailly L., Henrich Bernardoni N., Müller F., Rohlfs A-K., Hess M., JSLHR, Vol. 57 pp. 1219–1242, August 2014 (https://hal.archives-ouvertes.fr/hal-00998464). It completes Figures B1 and B2 in Appendix B. It includes 58 videos (avi format, without sound for highspeed videos), the 2*58 audio files in wav, "short" and "long" version (with context), 58 images of folds (png format) and 58 associated kymographic images (bmp format). The whole database is 1.66 GB. The largest files are the videos, from 6 to 102 MB.
DOI: 10.57745/kivm0p
title: Enquête sur la fréquentation des forêts aquitaines en 2020

description: Français L'enquête | Elle portait sur la fréquentation des forêts en Aquitaine. Elle a été administrée par questionnaire, et par téléphone, du 7 au 15 décembre 2020, sur un échantillon de 501 individus âgés de 15 ans et plus. Cinq départements sont couverts, la Dordogne, la Gironde, les Landes, le Lot-et-Garonne et les Pyrénées-Atlantiques, soit une population totale de 3,4 millions d’habitants environ. Des quotas ont été définis de sorte à obtenir une répartition des interviews à part égale (n=100) entre chacun des cinq départements, et d’assurer une représentation équilibrée des individus, entre ceux qui habitent près des forêts, et ceux qui en sont éloignés. Le questionnaire | Il s'agit du questionnaire d'enquête en français administré par téléphone, en décembre 2020. D’une durée moyenne de 13 à 14 minutes, le questionnaire abordait les thèmes suivants : la fréquentation des espaces naturels en général, et de la forêt en particulier durant l’année écoulée; les pratiques récréatives de la forêt (activités, fréquence, moyen de transport, composition du groupe) ; les facteurs d’attractivité ; l’impact des mesures sanitaires liées à la gestion de l’épidémie de la Covid-19 sur la fréquentation de la forêt. Des questions supplémentaires sur les caractéristiques sociodémographiques du répondant complètent le questionnaire. English The survey | It concerned the use of forests in Aquitaine. It was administered by questionnaire and by telephone from 7 to 15 December 2020, on a sample of 501 individuals aged 15 years and over. Five departments were covered, the Dordogne, Gironde, Landes, Lot-et-Garonne and Pyrénées-Atlantiques, representing a total population of approximately 3.4 million inhabitants. Quotas were defined in order to obtain an equal distribution of interviews (n=100) between each of the five departments, and to ensure a balanced representation of individuals, between those who live close to the forests and those who are far from them. The questionnaire | This is the english version of the survey questionnaire administered in french by telephone in December 2020. The average length of the questionnaire was 13-14 minutes and it covered the following topics: the recreational use of natural areas in general, and the forest in particular, during the past year; recreational activities in the forest (activities, frequency, means of transport, group composition); attractiveness factors; the impact of sanitary measures related to the management of the Covid-19 epidemic on the use of the forest. Additional questions on the socio-demographic characteristics of the respondent complete the questionnaire.
DOI: 10.57745/f7rjqr
title: Dataset experimentation Barails

description: Dataset containing data and information collected on the grassland restoration experiment of the Barails Park (Bordeaux, France)
DOI: 10.57745/g4d3pg
title: DATA and CODE for "Metabolic consequences of various fruit-based diets in a generalist insect species"

description: This repository includes all DATA and CODE used in the study "Metabolic consequences of various fruit-based diets in a generalist insect species", available on bioRxiv under the accession 2022.10.21.513142
DOI: 10.57745/g9jtzx
title: OSO vecteur 2021 - Département de l'Ariège

description: Produit vectoriel de l'occupation du sol OSO 2021 sur le département de l'Ariège
DOI: 10.57745/gfevrq
title: Données LIDAR ULM - Ripisylve du Ciron, automne 2019

description: Données lidar ULM acquises sur la rivière du Ciron dans le cadre du projet de recherche FRISBEE (Octobre 2019).
DOI: 10.57745/gfmnhd
title: Replication data for: Phase field study of the effective fracture energy increase during dynamic crack propagation in disordered heterogeneous materials.

description: Here are the data used for the creation of the figures of the article «Phase field study of the effective fracture energy increase during dynamic crack propagation in disordered heterogeneous materials.» Some more data are included. The data were obtained with numerical simulations of a phase field model of crack propagation in a disordered material composed of spherical heterogeneities of a given radius placed randomly in a matrix. The heterogeneities elastic moduli are smaller than the matrix ones. Data are mostly position of the crack front during the dynamic crack propagation.
DOI: 10.57745/h3qjtu
title: Raw data used for statistical analysis in SAS for: "Evaluating the effect of phenolic compounds as hydrogen acceptors when ruminal methanogenesis is inhibited in vitro – Part 1. Dairy cows" Huang et al. Animal 2023

description: Raw data used for statistical analysis in SAS for: "Evaluating the effect of phenolic compounds as hydrogen acceptors when ruminal methanogenesis is inhibited in vitro – Part 1. Dairy cows" Huang et al. Animal 2023
DOI: 10.57745/hcfxby
title: 1H-NMR metabolomic data in pigs to improve the understanding of heat stress adaptation mechanisms

description: Heat stress is one of the main limiting performance factors in the pig industry, and its importance is expected to grow with the consequences of a warming climate. Different solutions to temper the influence of heat stress on the performance and well-being of pigs have been studied, and genetic selection appears as a potential solution. Genetic mechanisms behind heat tolerance are still poorly understood, but some differences between breeds and an interaction between genetics and environment have been shown. This study aims to use omics data to understand the metabolic pathways involved in heat stress adaptation. To achieve this, NMR metabolomic data from Longissimus dorsi muscle, liver, plasma, and urine were obtained in an experiment involving 36 pigs from 3 breeds slaughtered before (n=18) or after a 5-day exposure to 32°C (n=18). The animals were raised at the French Experimental Unit PTEA, INRAE, Petit-Bourg in Guadeloupe. 35 samples were available for analysis.
DOI: 10.57745/hddbmy
title: cheese_iron_concentrations_survey

description: Literature survey focusing on the concentration of iron in cheese (mg/kg). This dataset was extracted from 21 research articles and from 2 food databases: Ciqual (https://ciqual.anses.fr/#/cms/download/node/20) from 2020-07-07 and FoodData Central (https://fdc.nal.usda.gov/index.html) from 2024-04-18. The research articles were extracted from a PubMed search from 2024-06-04. The search was based on: ("cheese"[MeSH Terms] OR "cheese"[All Fields] OR "cheeses"[All Fields] OR "cheese s"[All Fields]) AND ("iron"[MeSH Terms] OR "iron"[All Fields]) AND ("concentrate"[All Fields] OR "concentrated"[All Fields] OR "concentrates"[All Fields] OR "concentrating"[All Fields] OR "concentration"[All Fields] OR "concentrations"[All Fields]) A total of 42 hits was found and after curation, 21 research articles were retained for data extraction.
DOI: 10.57745/hg5rxf
title: Calibration for Non Destructive evaluations of the water and chloride contents of concrete mixes based on Portland cement and Blast Furnace Slag

description: This database contains the results of electromagnetic non-destructive (ND) evaluations of several concrete mixes in the laboratory. The measurement cells have been adapted for cores 75 mm in diameter and 70 mm high. The materials studied herein consist of three concrete mixes with Portland cement (CEM I) and various substitution rates of blast furnace slag (BFS). The ND measurement cells are used to determine the calibration curves corresponding to the DC-electrical resistivity (resp. complex permittivity) versus the water or chloride contents. These curves are requested during the step to convert the resistivity (resp. complex permittivity) profiles into either water content profiles [Eid et al. 2024] or chloride profiles [El Achrafi et al. 2023, 2024]. This study has been conducted within the framework of the French DEMCOM research project (ANR-2020-CE22-0008); it seeks to monitor reinforced concrete structures by means of embedded resistivity sensors. These structures are subjected to several environmental conditions, including: drying, wetting by rain, and chloride ingress in the case of marine exposure.
DOI: 10.57745/hgdwwp
title: RPG complété 2021 Région Franche-Comté

description: RPG complété 2021. Complète le RPG campagne 2021 pour les départements de la région Franche-Comté (25, 39, 70, 90). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2023.