cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15547800
title: Towards Supporting Open Source Library Maintainers with Community-Based Analytics

description: Overview

This replication package contains data and scripts used in our study. The package is structured into four main components.

Folder Structure

1. Data





ProcessedData: Contains refined datasets that guide our research questions.




RawData: Contains raw scraped data about dependents from GitHub, selected for analysis.



2. RepoClonerDataAnalyser





The starting repository for the study.




Select the top 10 libraries and their dependents.




Clones repositories and analyzes all research questions.




Implemented in Python.



3. methodTypeResolutionJavaParser





A Java project used for method resolution.




This tool is used for parsing and resolving method types after cloning repositories and filtering potential Java files using the RepoClonerDataAnalyzer project.



4. JacocoCoverageReporter





Converts raw JaCoCo HTML coverage reports into CSV format.


Implemented in Python 


5. Survey Forms



Contains pdf version of survey forms that was shared to maintainers.


Usage Instructions

Each project within this package has its own README file with detailed setup and execution instructions. Below is a high-level guide:





Data Collection: Use RepoClonerDataAnalyser to select, clone, and filter dependents.




Method Resolution: Run methodTypeResolutionJavaParser on filtered Java files.




Coverage Analysis: Use JacocoCoverageReporter to convert JaCoCo HTML reports into CSV format and then Use RepoClonerDataAnalyser for further analysis. 




Data Analysis: Utilize the processed data in the Data folder for research insights.



Requirements





Python 3.x




Java 8+




Required dependencies (listed in individual project README files. In version 1, you might notice a random GitHub repository URL provided in individual README. It is intended solely for context and clarity. It does not lead to an accessible resource and results in a 404 error. We have removed it in version 2 to avoid any confusion.)
DOI: 10.5281/zenodo.5525336
title: Abundance of benthic sessile fauna associated with ARMS from the research" Evaluation of the use of Autonomous Reef Monitoring Structures (ARMS) for capturing the biological diversity of two coral reefs in the Yucatán Península, México " using the point intersection method (400 points per plate on each side) with the CPCe v4.1 soft-ware (Coral Point Count with Excel extension v4.1)

description: *Corresponding autor: edlinguerra@gmail.com

This database contains information on the abundance of benthic sessile fauna associated with ARMS from the research “Evaluation of the use of Autonomous Reef Monitoring Structures (ARMS) to estimate cryptic diversity in two coral reefs of the Yucatan Península, México” using the point intersection method (400 points per plate on each side) with the CPCe v4.1 soft-ware (Coral Point Count with Excel extension v4.1) to analyze 

Krebs, C.J. Estimating Density: Quadrats Counts. In Ecological Methodology; Addison-Wesley Educational Publishers, Inc., 1999; p. 69 ISBN 0321021738

Kohler, K.; Gill, S. Coral Point Count with Excel extensions (CPCe): A Visual Basic program for the determination of coral and substrate coverage using random point count methodology. Comput. Geosci. 2006, 32, 1259–1269





was produced in collaboration with the Biodiversidad Marina de Yucatán project. https://www.bdmy.org.mx/, Universidad Nacional Autonoma de México, Harte Research Institute for Gulf of Mexico Studies and Escuela Nacional de Estudios Superiores
DOI: 10.5281/zenodo.5525335
title: Abundance of benthic sessile fauna associated with ARMS from the research" Evaluation of the use of Autonomous Reef Monitoring Structures (ARMS) for capturing the biological diversity of two coral reefs in the Yucatán Península, México " using the point intersection method (400 points per plate on each side) with the CPCe v4.1 soft-ware (Coral Point Count with Excel extension v4.1)

description: *Corresponding autor: edlinguerra@gmail.com

This database contains information on the abundance of benthic sessile fauna associated with ARMS from the research “Evaluation of the use of Autonomous Reef Monitoring Structures (ARMS) to estimate cryptic diversity in two coral reefs of the Yucatan Península, México” using the point intersection method (400 points per plate on each side) with the CPCe v4.1 soft-ware (Coral Point Count with Excel extension v4.1) to analyze 

Krebs, C.J. Estimating Density: Quadrats Counts. In Ecological Methodology; Addison-Wesley Educational Publishers, Inc., 1999; p. 69 ISBN 0321021738

Kohler, K.; Gill, S. Coral Point Count with Excel extensions (CPCe): A Visual Basic program for the determination of coral and substrate coverage using random point count methodology. Comput. Geosci. 2006, 32, 1259–1269





was produced in collaboration with the Biodiversidad Marina de Yucatán project. https://www.bdmy.org.mx/, Universidad Nacional Autonoma de México, Harte Research Institute for Gulf of Mexico Studies and Escuela Nacional de Estudios Superiores
DOI: 10.6084/m9.figshare.30705248
title: <b><i>Paphiopedilum</i></b><i> </i><b><i>malipoense</i></b>

description: <b>CDS sequence of </b><b><i>Paphiopedilum</i></b><i> </i><b><i>malipoense</i></b>
DOI: 10.6084/m9.figshare.30705248.v1
title: <b><i>Paphiopedilum</i></b><i> </i><b><i>malipoense</i></b>

description: <b>CDS sequence of </b><b><i>Paphiopedilum</i></b><i> </i><b><i>malipoense</i></b>
DOI: 10.34894/ongocf
title: Eye contact during virtual storytelling: Enhancing social evaluation through pupil mimicry

description: The dataset used for the study described in the paper "Eye contact during virtual storytelling: Enhancing social evaluation through pupil mimicry"
DOI: 10.25824/redu/apqyij
title: Dados de estimulação transcutânea espinal

description: Os dados apresentados são resultantes do projeto "Otimização da tsDCS Cervical Baseada em Modelagem: O Impacto da Anatomia Individual e da Direção do Campo Elétrico na Excitabilidade Neuronal". É composto pelos modelos de volume condutor (formato STL) e motoneurônios (formato SWC) utilizados para simulação do campo elétrico e de seu efeito sobre a excitabilidade de motoneurônios. O modelo de volume condutor (pasta STL) foi utilizado para geração do campo elétrico no COMSOL a partir das propriedades elétricas de cada tecido (pasta dielétrico), enquanto os modelos morfológicos (pasta NeuronioMotor) de motoneurônios foram utilizados para amostragem do campo elétrico (COMSOL) e simulação da resposta no potencial de membrana (NEURON). Além disso, apresenta os resultados estatísticos (pasta relatorios) das comparações de campo elétrico e das respostas do potencial de membrana apresentadas e descritas na tese.
DOI: 10.15468/dl.9tjk65
title: Occurrence Download

description: A dataset containing 19421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nyctalus lasiopterus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 19421 records from 394 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007563-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8sskdj
title: Occurrence Download

description: A dataset containing 56584 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-3.91187 42.88055,-3.66737 42.88055,-3.66737 43.01849,-3.91187 43.01849,-3.91187 42.88055))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 56584 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007542-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.twfjnr
title: Occurrence Download

description: A dataset listing the 200 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((12.63045 57.66058,12.64312 57.66058,12.64312 57.6681,12.63045 57.6681,12.63045 57.66058))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 200 records were derived from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007555-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngc2th
title: Occurrence Download

description: A dataset containing 586 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present",
 "TaxonKey is Tremarctos ornatus",
 "Year 2025-2025"
 ]
}

 The dataset includes 586 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007564-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kbsnua
title: Occurrence Download

description: A dataset containing 548 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Riptortus pedestris"
 ]
}

 The dataset includes 548 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007565-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30705260
title: <b>Paphiopedilum</b> <b>micranthum</b>

description: <b>CDS sequence of </b><b> </b><b><i>Paphiopedilum</i></b><i> </i><b><i>micranthum</i></b>
DOI: 10.6084/m9.figshare.30705260.v1
title: <b>Paphiopedilum</b> <b>micranthum</b>

description: <b>CDS sequence of </b><b> </b><b><i>Paphiopedilum</i></b><i> </i><b><i>micranthum</i></b>
DOI: 10.15468/dl.uan3tv
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((94.96626 5.92499,94.29736 4.90197,95.6745 3.80026,97.62217 2.12802,99.23538 -0.40985,102.08803 -4.61996,104.27178 -6.80371,105.8063 -6.23318,107.20312 -2.65262,105.23577 -0.7443,103.99635 0.49512,102.36346 1.28206,100.2584 3.13136,97.18935 5.96433,94.96626 5.92499))",
 "TaxonKey is Callicarpa"
 ]
}

 The dataset includes 71 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007568-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6u5dtx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mammalia",
 "HasCoordinate is true",
 "Geometry POLYGON ((-119.4801 34.9466, -119.4795 34.94667, -119.4794 34.94697, -119.4794 34.94725, -119.4796 34.94758, -119.4797 34.94761, -119.4798 34.94765, -119.4799 34.94771, -119.4801 34.94773, -119.4801 34.94752, -119.4806 34.94737, -119.4804 34.94666, -119.4801 34.9466))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007570-251120083545085/datasets/export for details.
DOI: 10.6084/m9.figshare.30705269
title: <b><i>Paphiopedilum</i></b><i> </i><b><i>emersonii</i></b>

description: <b>CDS sequence of </b><b><i>Paphiopedilum </i></b><b><i>emersonii</i></b>
DOI: 10.6084/m9.figshare.30705269.v1
title: <b><i>Paphiopedilum</i></b><i> </i><b><i>emersonii</i></b>

description: <b>CDS sequence of </b><b><i>Paphiopedilum </i></b><b><i>emersonii</i></b>
DOI: 10.15468/dl.hkzcbq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mammalia",
 "HasCoordinate is true",
 "Geometry POLYGON ((-119.8883 35.04544, -119.8879 35.04615, -119.8892 35.04659, -119.8897 35.04634, -119.8899 35.04615, -119.89 35.04578, -119.8901 35.04506, -119.8883 35.04544))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007572-251120083545085/datasets/export for details.
DOI: 10.15468/dl.8chh7q
title: Occurrence Download

description: A dataset containing 6895 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Eumorpha"
 ]
}

 The dataset includes 6895 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007571-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7k474v
title: Occurrence Download

description: A dataset containing 209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Ochlerotatus cantans"
 ]
}

 The dataset includes 209 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007574-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3334/cdiac/otg.vos_atlantic_companion_line_2007
title: Underway fCO2 measurements in the North Atlantic Ocean on M/V Atlantic Companion VOS line during the 2006-2007 cruises (NCEI Accession 0081030)

description: This dataset includes carbon dioxide, temperature, salinity, and other variables collected via surface underway survey from Volunteer Observing Ship Atlantic Companion in the North Atlantic Ocean from 2006-06-11 to 2007-11-05.
DOI: 10.3334/cdiac/otg.vos_falstaff_2010
title: Underway fCO2 measurements in the North Atlantic Ocean on M/V Falstaff VOS Line from 2002-02-26 to 2005-07-22 (NCEI Accession 0081036)

description: This dataset contains carbon dioxide, temperature, salinity, and other variables collected via surface underway survey from Volunteer Observing Ship FALSTAFF in the North Atlantic Ocean during the 2002-2003 and 2005 cruises.
DOI: 10.3334/cdiac/otg.vos_nuka_2005_lines
title: Partial pressure (or fugacity) of carbon dioxide and SEA SURFACE TEMPERATURE collected from surface underway observations using Carbon dioxide (CO2) gas analyzer, Shower head chamber equilibrator for autonomous carbon dioxide (CO2) measurement and other instruments from NUKA ARCTICA in the Davis Strait, Labrador Sea and others from 2005-01-07 to 2005-12-03 (NCEI Accession 0081037)

description: This dataset includes chemical, physical and surface underway data collected from NUKA ARCTICA in the Davis Strait, Labrador Sea, North Atlantic Ocean, North Sea and Skagerrak from 2005-01-07 to 2005-12-03. These data include Partial pressure (or fugacity) of carbon dioxide - water and SEA SURFACE TEMPERATURE. The instruments used to collect these data include Carbon dioxide (CO2) gas analyzer and Shower head chamber equilibrator for autonomous carbon dioxide (CO2) measurement.

These data were collected by Truls Johannessen of Bjerknes Centre for Climate Research and Are Olsen of University of Bergen; Geophysical Institute (GFI) as part of the VOS_Nuka_Arctica_2005 dataset. CDIAC associated the following cruise ID(s) with this dataset: 26NA20050107-26NA20051130
DOI: 10.25921/xh2m-3a08
title: Oceanographic data and ROV dive-related multimedia and information collected during the EX1202L2 (Gulf of Mexico Exploration) expedition on NOAA Ship OKEANOS EXPLORER in the Gulf of Mexico from 2012-03-19 to 2012-04-11 (NCEI Accession 0087994)

description: This dataset contains oceanographic data collected in areas off the West Florida Shelf, around Desoto Canyon, in the vicinity of the Deepwater Horizon site and Mississippi Canyon. Daily schedules were split between daytime ROV operations (&lt;4000 m) and nightly multibeam surveys. Nightly operations also included CTD casts and water-column experiments. This expedition identified and explored the diversity of benthic habitats in the region, located and characterized submerged cultural resources and their eligibility for the National Register of Historic Places, expanded tests of acoustic methods to detect gas seeps and measure flux, and improved capabilities to explore the water column.
DOI: 10.25921/e983-wn28
title: Oceanographic data and ROV dive-related multimedia and information collected during the EX1202L3 (Gulf of Mexico Exploration) expedition on NOAA Ship OKEANOS EXPLORER in the Gulf of Mexico from 2012-04-11 to 2012-04-29 (NCEI Accession 0087995)

description: This dataset contains oceanographic data collected in the vicinity of the Deepwater Horizon site, Mississippi Canyon, and Green Canyon. Deepwater areas in the vicinity of the Flower Garden Banks were also explored. Daily schedules were split between daytime ROV operations (&lt;4000 m) and nightly multibeam surveys. Nightly operations also included CTD casts. The initial portion of leg III focused on flux experiments using the ROV to ground-truth acoustic data. This expedition identified and explored the diversity of benthic habitats in the region, located and characterized submerged cultural resources and assessed their eligibility for the National Register of Historic Places, and improved capabilities to explore the water column.
DOI: 10.3334/cdiac/otg.clivar_75n_2006
title: Dissolved inorganic carbon, alkalinity, temperature, salinity and other variables collected from discrete sample and profile observations during the G.O. SARS cruise gs2006111 (EXPOCODE 58GS20060721) in the North Greenland Sea and Norwegian Sea from 2006-07-21 to 2006-08-05 (NCEI Accession 0105859)

description: This dataset includes chemical, discrete sample, physical and profile data collected from G.O. SARS in the North Greenland Sea and Norwegian Sea from 2006-07-21 to 2006-08-05 and retrieved during cruise 58GS20060721 (gs2006111). These data include ALKALINITY, CHLOROFLUOROCARBON-11 (CFC-11), CHLOROFLUOROCARBON-12 (CFC-12), DISSOLVED INORGANIC CARBON, DISSOLVED OXYGEN, HYDROSTATIC PRESSURE, NITRATE, NITRITE, PHOSPHATE, Potential temperature (theta), SALINITY, SILICATE and WATER TEMPERATURE. The instruments used to collect these data include Alkalinity titrator, CTD, Coulometer for DIC measurement and bottle. These data were collected by Are Olsen of University of Bergen; Geophysical Institute (GFI), Norway as part of the CLIVAR_75N_2006 dataset.

The International CLIVAR Global Ocean Carbon and Repeat Hydrography Program carries out a systematic and global re-occupation of select WOCE/JGOFS hydrographic sections to quantify changes in storage and transport of heat, fresh water, carbon dioxide (CO2), and related parameters.
DOI: 10.15468/dl.bysc7b
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mammalia",
 "HasCoordinate is true",
 "Geometry POLYGON ((-119.896 35.04811, -119.895 35.04811, -119.8951 35.05008, -119.8964 35.05009, -119.897 35.04811, -119.896 35.04811))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007577-251120083545085/datasets/export for details.
DOI: 10.25921/z06k-2c18
title: Dissolved inorganic carbon (DIC), total alkalinity, temperature, salinity and other variables collected from discrete sample and profile observations during the R/V Pelagia cruise CLIVAR_AR07E_2005 (EXPOCODE 64PE20050907) in the North Atlantic Ocean from 2005-09-07 to 2005-10-05 (NCEI Accession 0108072)

description: This dataset includes discrete profile measurements of dissolved inorganic carbon (DIC), total alkalinity, temperature, salinity, dissolved oxygen and nutrients during the R/V Pelagia cruise CLIVAR_AR07E_2005 (EXPOCODE 64PE20050907) in the North Atlantic Ocean from 2005-09-07 to 2005-10-05. The International CLIVAR Global Ocean Carbon and Repeat Hydrography Program carries out a systematic and global re-occupation of select WOCE/JGOFS hydrographic sections to quantify changes in storage and transport of heat, fresh water, carbon dioxide (CO2), and related parameters.
DOI: 10.48329/d30w-8g08
title: CPRD Aurum Mother-Baby Link June 2025

description: A list of all likely mother-baby pairs in the CPRD Aurum database generated using a probabilistic algorithm applied to the primary care data. Algorithmic linkage is done based on household number plus maternity information from the mother’s primary care record, the infant’s month of birth and care records of newly registered babies. 
description: Access to anonymised data from CPRD is subject to a full licence agreement containing detailed terms and conditions of use. Anonymised patient datasets can be extracted for researchers against specific study specifications, following protocol approval via CPRD's Research Data Governance Process. Further information is available at https://www.cprd.com/data-access.
description: Please contact enquiries@cprd.com for further information or if you have any questions.
DOI: 10.3334/cdiac/otg.clivar_tto_2004
title: Dissolved inorganic carbon, alkalinity, temperature, salinity and other variables collected from discrete sample and profile observations using Alkalinity titrator, CTD and other instruments from the METEOR in the North Atlantic Ocean from 2004-03-10 to 2004-04-13 (NCEI Accession 0108085)

description: This dataset includes chemical, discrete sample, physical and profile data collected from METEOR in the North Atlantic Ocean from 2004-03-10 to 2004-04-13 and retrieved during cruise 06MT20040310. These data include ALKALINITY, CHLOROFLUOROCARBON-11 (CFC-11), CHLOROFLUOROCARBON-12 (CFC-12), Carbon tetrachloride (CCL4), DISSOLVED INORGANIC CARBON, DISSOLVED OXYGEN, HYDROSTATIC PRESSURE, NITRATE, NITRITE, OXYGEN - APPARENT UTILIZATION (AOU), PHOSPHATE, Potential temperature (theta), SALINITY, SIGMA-T, SILICATE and WATER TEMPERATURE. The instruments used to collect these data include Alkalinity titrator, CTD, Coulometer for DIC measurement and bottle. These data were collected by Douglas W. R. Wallace of Dalhousie University; Institute of Oceanography and Toste Tanhua of GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany as part of the TTO_2004 Repeat Section Meteor 60/5 dataset.

The International CLIVAR Global Ocean Carbon and Repeat Hydrography Program carries out a systematic and global re-occupation of select WOCE/JGOFS hydrographic sections to quantify changes in storage and transport of heat, fresh water, carbon dioxide (CO2), and related parameters.
DOI: 10.15468/dl.h295js
title: Occurrence Download

description: A dataset containing 489 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera uncia"
 ]
}

 The dataset includes 489 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007578-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.