cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12896309.v2
title: An updated dataset of the global occurrence of the Atlantic blue crab Callinectes sapidus Rathbun, 1896 (Brachyura: Portunidae)

description: The Atlantic blue crab Callinectes sapidus is a portunid native to the western Atlantic, from New England to Uruguay. The species was introduced in Europe in 1901 and in recent years it has become invasive; additionally, a significant northward expansion has been emphasized also in its native range. Here we present a harmonized global compilation of occurrences of the Atlantic blue crab Callinectes sapidus from native and non-native distribution ranges. Data are derived from online databases (GBIF, BISON, OBIS, and iNaturalist) as well as from peer-reviewed literature and unpublished sources gathered from personal communications and from available-on-request databases either directly maintained by the Hellenic Centre for Marine Research (HCMR; https://www.hcmr.gr), or connected with the HCMR, such as the Ellenic Network on Aquatic Invasive Species (ELNAIS; https://elnais.hcmr.gr). The dataset consists of 40,388 geo-referenced occurrences, 39,824 from native and 564 from non-native ranges, recorded in 53 countries. It contains taxonomic information (i.e., scientific name together with the name of who described the taxon originally complemented by the unique identifier of the species provided by the World Register of Marine Species - WoRMS; www.marinespecies.org), the sources from which the records were collated with the original identification codes if available, spatial and temporal information (i.e., coordinates in decimal degrees and year of record; if available also the month and day of record were included), and the country where the occurrences were recorded. In addition, flagging fields were included to categorise i) the status of the species at the record’s location (i.e., native or non-native) supplemented by notes identifying uncertain taxonomic identifications and records associated with unsuccessful introductions; ii) the most recent records with different coordinates to the third decimal, complemented by an additional field flagging each entry with unique coordinates with a progressively increasing integer, while less recent records in the same location are flagged by the same integer and iii) records located under fully marine conditions, in-land records, and those located in coastal areas. The dataset is complemented by a complete list of literature sources, including permanent identifiers (bibliographic Citation DOI) if available, a table describing the details of each flagging field, and a list of notes related with outliers and unsuccessful intentional introductions outside the native range. Notes are numbered according to the flags included in the dataset.<br>
DOI: 10.6084/m9.figshare.16726042.v1
title: SPSS Data

description: The survey was conducted by Google Forms through social media channels (WhatsApp, Twitter, Facebook, etc.) between October 01 and November 01, 2020, when the 2nd COVID-19 wave began. Five hundred thirteen individuals older than age 18 and from Turkey participated in the research. The respondents were directed to research's website through a link, and they participated in the online questionnaire voluntarily and anonymously.
DOI: 10.17632/ysky8r2wkd
title: Repository of 2D shapes with known roundness and sphericity

description: This repository contains 2D black and white jpg shapes with known Wadell roundness R and sphericity S. Its purpose is to serve as training and test images for roundness and sphericity measurement artificial vision algorithms, in particular with application to fracking sands.
The dataset contains 1300 figures that cover the full range of possible combinations of roundness R and sphericity S with 0.1<R<0.9 and 0.15<S<1, with steps of 0.05 in both R and S.
There are approximately 4.3 figures for each possible combination of R and S in the indicated ranges and steps.

The basic data set is in the artificial500 folder, where the files are on average 500px wide. The same figures are available in smaller average sizes of 100px and 200px in the artificial100 and artificial200 folders, in order to test the insensitivity of the measurement algorithms to image accuracy.

The artiShapes.xlsx excel sheet contains the true Wadell roundness and sphericity corresponding to each jpg filename.
DOI: 10.5522/04/14825334.v1
title: When less is more: Robot swarms adapt better to changes with constrained communication [Real Kilobots experiments frames and tracking data]

description: Real robots experiments data of the paper:<br>M. S. Talamali, A. Saha, J. A. R. Marshall, A. Reina, When less is more: Robot swarms adapt better to changes with constrained communication. Sci. Robot. 6, eabf1416 (2021).
DOI: 10.6084/m9.figshare.22289473.v2
title: Table 10. Regression Analysis Results of Hypothesis 1

description: Regression Analysis Results of Hypothesis 1
DOI: 10.17632/y4cpkdz77d
title: Mechanism of noncoding RNA associated N6-Methyladenosine recognition by an RNA processing complex during IgH DNA recombination

description: Immunoglobulin heavy chain (IgH) locus-associated G-rich long noncoding RNA (SµGLT) is important for physiological and pathological B cell DNA recombination. We demonstrate that the METTL3 enzyme-catalyzed N6-methyladenosine (m6A) RNA modification drives recognition and 3’-end processing of SµGLT by the RNA exosome, promoting class switch recombination (CSR) and suppressing chromosomal translocations. The recognition is driven by interaction of the MPP6 adaptor protein with nuclear m6A reader YTHDC1. MPP6 and YTHDC1 promote CSR by recruiting AID and the RNA exosome to actively transcribing SµGLT. Direct suppression of m6A modification of SµGLT or of m6A reader YTHDC1 reduces CSR. Moreover, METTL3, an essential gene for B cell development in the bone marrow and germinal center, suppresses IgH-associated aberrant DNA breaks and prevents genomic instability. Taken together, we propose coordinated and central roles for MPP6, m6A modification, and m6A reader proteins in controlling long noncoding RNA processing, DNA recombination and development in B cells.
DOI: 10.17632/zwfhvt2zgp
title: One year buoy datasets off the coast of Terengganu in the southern South China Sea

description: This dataset comprised oceanographic data collected by an oceanographic buoy off the coast of Terengganu in the southern South China Sea (SCS) at 4.87 °N and 104.83 °E as part of a collaboration between Universiti Malaysia Terengganu (Malaysia) and the First Institute of Oceanography (China). The dataset includes surface sea water temperature, surface sea water salinity, and eastward and northward sea water velocities recorded from the surface to the bottom. The data were obtained every 30 minutes between 1 December 2019 and 26 November 2020.
DOI: 10.6084/m9.figshare.27677610.v1
title: Supplementary Material for: Demographics and Immunotherapy Efficacy for Advanced Hepatocellular carcinoma: A Systematic Review and Meta-Analysis of Phase III Clinical Trials

description: Introduction: Immune checkpoint inhibitors (ICIs) are fundamental in treating advanced hepatocellular carcinoma (HCC). Considering previous reports implied varied responses among patient subgroups, such as patients with different hepatitis etiologies, we planned this meta-analysis to identify specific populations that might derive greater survival benefits from ICIs as a first-line treatment.

Methods: We conducted a comprehensive search in PubMed and the Cochrane Library for phase III clinical trials comparing ICIs and multikinase inhibitors (MKIs) as first-line therapies for advanced HCC. We extracted and synthesized hazard ratios (HRs) for overall survival (OS) across different patient subgroups mainly using the random effect model.

Results: Our analysis included nine phase III trials involving ICIs, either alone or in combination with other treatments, compared with MKIs. The synthesized HRs for patients with hepatitis B virus, hepatitis C virus, and nonviral etiologies were 0.74, 0.77, and 0.86, respectively, showing no significant differences (p = 0.13). Such finding remained when we only analyzed clinical trials with positive results. HRs consistently favored ICIs across various demographics such as age, sex, geographic region, performance status, alpha-fetoprotein levels, and disease stage or extent. Notably, patients with extrahepatic spread showed a trend towards better outcomes (HR 0.73) compared to those without (HR 0.85, p = 0.07).

Conclusion: The efficacy of ICIs as a first-line treatment for advanced HCC was consistent across diverse patient subgroups, regardless of hepatitis etiology or other demographic factors. These findings do not support using these characteristics to determine the use of ICI therapy in advanced HCC.
DOI: 10.17632/2wdxsg4g6w
title: The impact of hydrothermal silicification on fault zone porosity and permeability: insights from the Kornos-Aghios Ioannis Normal Fault, Lemnos Island, Greece

description: This dataset is related to the publication "The impact of hydrothermal silicification on fault zone porosity and permeability: insights from the Kornos-Aghios Ioannis Normal Fault, Lemnos Island, Greece", by L.R. Berio, F.H.R. Bezerra, M.F.P. Brito, M.A.F. Rodrigues, F. Storti and F. Balsamo. In the dataset, data are subdivided by publication figures.
DOI: 10.17632/sdnwjxjhc8
title: Research data of "A Comparative Analysis of Collocational Preferences for the Word “People” in Korean Across Chinese, North Korean, and South Korean News Corpora"

description: A Korean corpus of 3 million Korean "eojeol" containing news texts from three countries, namely, Yanbian Daily of China, Rodong Sinmun of North Korea, and Joongang Ilbo of South Korea, was constructed. The segments containing the word “people”(인민) were further selected, and the frequency of occurrence of each lexeme type and lexeme combination type was counted.
DOI: 10.6084/m9.figshare.13578759.v1
title: Additional file 1 of Genome evolution during bread wheat formation unveiled by the distribution dynamics of SSR sequences on chromosomes using FISH

description: Additional file 1. SSR sequence dynamics observed between wheat and its diploid progenitors.
DOI: 10.6084/m9.figshare.16564815.v2
title: r2SCAN, SCAN, and PBEsol calcluations for 6,307 solid materials

description: This data file contains density functional theory calculations for approximately 6,000 crystalline solid materials, each computed using the PBEsol, SCAN, and r2SCAN functionals. Note that <b>all DFT calculations contained here are also available via the Materials Project API Tasks endpoint </b>by querying for the `parameters["task_id"]` attribute of each ComputedStructureEntry (see below). These task_ids uniquely identify each individual DFT calculation. This data differs slightly from the data returned by the API in that it contains additional metadata pertaining to the computed bandgap, formation energy, degree of electron localization, and computational time for each material. The datafile is structured as a serialized list of python dictionaries which can be loaded into memory using the 'monty.serialization.loadfn' function. Each dictionary is similar to a 'materials document' object returned by the Materials Project API. This document contains information about the composition of the material and pymatgen ComputedStructureEntry objects for each of the three DFT calculations. Specifically, every document contains the following keys: · 'material_id' - the unique identifier of the material in the Materials Project Database. Note that this ID is distinct from the task_id associated with each ComputedStructureEntry. task_ids uniquely identify individual DFT calculations whereas the material_id uniquely identifies a material (i.e., a structure)<br> · 'formula_pretty' – the chemical formula of the material · 'elements’ – list of chemical elements in the material · 'nelements' – number of elements in the material (e.g. 2 for a binary material) · 'chemsys' – chemical system of the material (e.g. ‘Cl-Na’ for sodium chloride) · 'composition' – pymatgen Composition object for the material · 'entries' – dictionary of ComputedStructureEntry for each DFT calculation performed on this material. Keys are ‘r2scan`, `scan`, and `pbesol`. · 'compound_type' – Category of the material. ‘Weakly-bound’, ‘Strongly-bound’ or ‘U, Np, Pu’
DOI: 10.6084/m9.figshare.29053340.v1
title: Methylation SRR5836476

description: Differential methylation
DOI: 10.17632/bns689jpmg
title: Cognitive Evolutionary Therapy versus Standard Cognitive Therapy for Depression: A Single-Blinded Randomized Clinical Trial

description: Depression is one of the most common mental disorders and the leading cause of disability worldwide. Despite the benefits of the current treatments, continued efforts are needed to improve existing interventions or create new ones. This dataset contains the research data of a randomized controlled clinical trial which compared the efficacy of Cognitive-Evolutionary Therapy for depression with the efficacy of Cognitive Therapy for depression.
DOI: 10.17632/dddb2prk4p
title: Reflectance spectra of boreal forest floor elements: ferns, herbaceous plants and decaying wood

description: This dataset contains spectral reflectance factors at wavelengths from 350 to 2500 nm measured on boreal forest floor elements in three sub-sites around the Hyytiälä forest station (61◦ 51’N, 24◦ 18’E) in Finland. The data were collected in situ at the peak growing season from July 19 to 29, 2023 on 11 ferns, 11 common wood sorrel (Oxalis acetosella L.), 10 May lily (Maianthemum bifolium (L.) F.W. Schmidt) and 15 decaying wood samples. In addition, field measurements were associated with metadata describing the target and its surrounding environment. The table "spectral_measurements.csv" contains the hemispherical-conical reflectance factors for each target. The table "description.csv" contains metadata for each target. The file "sample_photos.pdf" contains photographs of the targets and their surrounding environment. For further details on data collection, the measurement process and the content of the data files, see README.pdf. If using the data, please cite the Mendeley Dataset: Mercier, Audrey; Karlqvist, Susanna; Hovi, Aarne; Rautiainen, Miina (2023), “Reflectance spectra of boreal forest floor elements: ferns, herbaceous plants and decaying wood”, Mendeley Data, V1, doi: 10.17632/dddb2prk4p.1 Funding: European Union – NextGenerationEU as part of the Research Council of Finland project ARTISDIG (decision number 348152).
DOI: 10.6084/m9.figshare.29095709.v2
title: Quality Attributes ADRs - ISO/IEC 25010: 2023

description: leveraging the ISO/IEC 25010:2023 standard, we used prompt engineering to apply the quality model's taxonomy in order to identify the explicit or implicit quality attributes affected by the trade-offs described in the ADR "consequences" section.
DOI: 10.17632/xr3bgz58rh
title: Lift augmentation by incorporating bend twist coupled composites in flapping wing

description: Data for Publication
DOI: 10.17632/z42pxrxsjr
title: Global Fast-Food Sentiment DB: Deep Learning Analysis of Twitter Feedback

description: The 'Global Fast-Food Sentiment DB: Deep Learning Analysis of Twitter Feedback' dataset comprises data collected from Twitter about three major fast-food restaurants - McDonald’s, Burger King, and KFC - which were listed among the top 25 most valuable restaurant brands by Brand Finance in 2022. The dataset includes English and Turkish tweets collected within a specific date range. Turkish tweets were translated into English to enhance classification accuracy. These brands were selected due to their high recognition both domestically and internationally. Online reviews about these brands were gathered from Twitter.

Tweets written in English and Turkish between September 9, 2022, and October 9, 2022, were collected, resulting in 145,551 English and 3,392 Turkish tweets. The data collection was conducted using the Python programming language, with the Snscrape library utilized for scraping tweets. To augment the number of Turkish tweets, additional data from June 8, 2022, onward were collected, totaling 12,391 Turkish tweets. The dataset also includes the location, date, and time information of the tweets.

The raw tweets underwent specific preprocessing steps. Polarity and subjectivity values were then derived using the TextBlob library. Based on polarity, the sentiment of the tweet content was classified as positive, negative, or neutral. The attributes of the created dataset include Text, Translated text (Only in the Turkish dataset), Cleaned text, Location, Date and time, Polarity value, Subjectivity value, Language, and Sentiment.

In the dataset composed of English tweets, McDonald’s is the most tweeted about brand with a total of 77,388 tweets. In contrast, in the dataset consisting of Turkish tweets, Burger King is the most mentioned brand with 2,334 tweets. The numbers of tweets gathered for each brand are as follows: For the English dataset, McDonald’s: 77,388 tweets, KFC: 24,904 tweets, and Burger King: 15,309 tweets; for the Turkish dataset, Burger King: 2,334 tweets, KFC: 1,831 tweets, and McDonald’s: 1,119 tweets. These numbers reflect the frequency of discussions surrounding each brand on social media, indicating a higher volume of English tweets for McDonald’s and a predominant Turkish conversation about Burger King within the context of our study.
DOI: 10.6084/m9.figshare.22213933.v1
title: Metadata WyoFlex Dataset

description: The Metadata.xls file contains the following information: (i) the participant’s identification defined as ParticipantX, where X varies from 1 to 28; (ii) Age, the participant’s age in years; (iii) Physical activity; (iv) Gender, the participant’s gender (Male or Female); (v) Laterality; (vi) Anthropomorphic dimensions in meters.
DOI: 10.17632/54r883j5zr
title: Smartphone Image Dataset for Aegle Marmelos, Hog Plum and Lemon Plant Leaf

description: Diseased, infected (encompassing multiple distinct diseases), and healthy leaves of Lemon, Aegle Marmelos, and Hog Plum were systematically collected. These leaves were photographed individually using android smartphone device Poco X3 Pro. Each leaf was captured from five angles under controlled conditions to capture diverse disease characteristics. Subsequently, the images were resized and excluded if any blurred or low-quality images were captured. In total, the dataset comprises approximately 3941 raw images and 12295 augmented images, encompassing a broad spectrum of diseased, infected, and healthy leaves for all three plant species.
DOI: 10.17632/c62dvhrcw9
title: Original western blot images

description: Original image of western blot.
DOI: 10.6084/m9.figshare.1541156.v3
title: Gender & Eye Color for Section 01

description: For the purposes of understanding and learning how to use figshare as well as understanding meta-data, data was collected from a sample size of 20(lab class section 01) in room 118 of the Lumbers Building in York University Keele campus under the supervision of Teaching Assistant Bailey Hewitt. Data was obtained mainly through inquiring participants in the sample size about their gender(male or female) and eye color(brown, hazel, blue, or green) by the four authors. The data suggests that the sample size is mostly female gendered with the majority having a brown eye color. The magnitude of this sample is too small to represent any population, If this data set was compared to the class next door, it will vary greatly, making it an unreliable source.
DOI: 10.6084/m9.figshare.20304240.v1
title: PIV data

description: Collection of PIV data for 3 swimming trials in the thrust wake and 1 steady swimming trial: - velocity fields - fluid/body interfaces - pressure fields
DOI: 10.6084/m9.figshare.25284943.v1
title: Chromosome-level genome assembly of the predatory stink bug Arma custos (Hemiptera: Pentatomidae)

description: Chromosome-level genome assembly of the predatory stink bug Arma custos (Hemiptera: Pentatomidae)
DOI: 10.17632/5pwm65phvm
title: Data for: Children's understanding of economic demand: A dissociation between inference and choice

description: Data for Smith, Applin, Blake, & Kibbe, Children’s understanding of economic demand: A dissociation between inference and choice.
DOI: 10.6084/m9.figshare.22004126.v2
title: Supporting Information

description: Data reported in the manuscript. Scripts used to generate the data.
DOI: 10.6084/m9.figshare.27242205.v1
title: Full-length transcriptome annotation of a pyrosome, <i>Pyrosoma atlanticum</i> (Chordata, Thaliacea)

description: The figures in the manuscript, the sequences files produced in bioinformatic pipeline from raw data to full-length transcriptome (CCSs, FLNC reads, consensus isoforms, HQ isoforms, LQ isoforms, transcripts, SSRs, lncRNAs, CDSs, CDSs (mRNA) and TFs), the prediction results of SSRs, CDSs, TFs, lncRNAs, the annotations of genes by eggNOG, COG, GO, KEGG, Pfam, KOG, NR and Swissprot, and the FPKM (Fragments Per Kilobase of transcript per Million mapped reads) values of three replicates generated by Illumine sequencing in <i>Pyrosoma atlanticum</i>
DOI: 10.6084/m9.figshare.5808429.v1
title: Figure 2c.xlsx

description: Raw data for Figure 2c.
DOI: 10.6084/m9.figshare.6267443.v1
title: aaa

description: aadedre
DOI: 10.17632/fsxf7mx8y4
title: Supplemental data for gastrointestinal comorbidities in acne vulgaris patients: a population-based retrospective study

description: Supplemental data for gastrointestinal comorbidities in acne vulgaris patients: a population-based retrospective study
DOI: 10.17632/khmxj6x6zv
title: Codes to produce figures in "Stochastic fluctuations and quasi-pattern formation in reaction-diffusion systems with anomalous transort"

description: Codes used to produce the data seen in the figures of the main paper
DOI: 10.6084/m9.figshare.19242567.v1
title: THE DATA FOR CORRELATION BETWEEN EGGSHELL COLORS AND EGG QUALITY TRAITS IN A WENSHANG BARRED CHICKEN POPULATION.xlsx

description: 温尚棒鸡中蛋重、蛋形指数、蛋壳轻度、蛋壳强度、蛋黄颜色、蛋壳厚度的测量数据。
DOI: 10.17632/9thyzzwd5d
title: Tree Segmentation and Change Detection of Large Urban Areas Based on Airborne LiDAR: Datasets and Supplementary Materials

description: Dataset of sample and reference territories for the article entitled "Tree segmentation and change detection of large urban areas based on airborne LiDAR".
DOI: 10.6084/m9.figshare.20550741.v1
title: Dummy cfDNA samples for the ITSFASTR pipeline

description: The archive contains 10 paired Illumina and 10 Oxford Nanopore Technologies (ONT) dummy cfDNA sequencing read files (.fq.gz) created by merging multiple real files from lung cancer patients respectively, followed by random downsampling to 100k reads. The original Illumina files were produced by shallow whole genome 150 bp paired end sequencing of plasma cfDNA samples, while the original ONT files by shallow whole genome sequencing using the PCR barcoding kit (SQK-PBK004).
DOI: 10.6084/m9.figshare.3551478.v1
title: Appendix C. The effect of undetected species on estimated species frequencies.

description: The effect of undetected species on estimated species frequencies.