cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9783827.v1
title: High-Throughput Screening Platform for Solid Electrolytes Combining Hierarchical Ion-Transport Prediction Algorithms

description: The combination of a materials database with high-throughput ion-transport calculations is an effective approach to screen for promising solid electrolytes. However, automating the complicated preprocessing involved in currently widely used ion-transport characterization algorithms, such as the first-principles nudged elastic band (FP-NEB) method, remains challenging. Here, we report on high-throughput screening platform for solid electrolytes (SPSE) that integrates a materials database with hierarchical ion-transport calculations realized by implementing empirical algorithms to assist in FP-NEB calculation. We first preliminarily screen candidates and determine the approximate ion-transport paths using empirical geometric analysis and bond valence method. A chain of images is then automatically generated along these paths for accurate FP-NEB calculation. In addition, an open web interface is actualized to enable access to the SPSE database, thereby facilitating machine learning. This interactive platform provides a workflow toward high-throughput screening for future discovery and design of promising solid electrolytes and the SPSE database is based on the FAIR principles for the benefit of the broad research community.<br>
DOI: 10.6084/m9.figshare.9783788.v1
title: Acute high-intensity and moderate-intensity interval exercise do not change corticospinal excitability in low fit, young adults

description: p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; text-align: justify; font: 12.0px 'Times New Roman'} Previous research has demonstrated a lack of neuroplasticity induced by acute exercise in low fit individuals, but the influence of exercise intensity is unclear. In the present study, we assessed the effect of acute high-intensity (HI) or moderate-intensity (MOD) interval exercise on neuroplasticity in individuals with low fitness, as determined by the International Physical Activity Questionnaire (IPAQ) and peak oxygen uptake (VO2peak) test (n = 19). Transcranial magnetic stimulation (TMS) was used to assess corticospinal excitability via area under the motor evoked potential (MEP) recruitment curve before and following training. Corticospinal excitability was unchanged after HI and MOD, suggesting no effect of acute exercise on neuroplasticity as measured via TMS in sedentary young individuals. Repeated bouts of exercise, i.e., physical training, may be required to induce short-term changes in corticospinal excitability in previously sedentary individuals.
DOI: 10.6084/m9.figshare.9783755
title: Open Access fNIRS Dataset for Classification of Unilateral Finger- and Foot-Tapping

description: fNIRS dataset for ternary classification
DOI: 10.6084/m9.figshare.9783782.v1
title: enzyme activities_Ziervogel and Arnosti_Guaymas.xlsx

description: This data set contains hydrolysis rates of carbohydrates measured in the water column at a site in Guayamas basin, Gulf of California. <br>
DOI: 10.6084/m9.figshare.9783659
title: MOESM4 of What are the effects of control of mosquitoes and other nematoceran Diptera using the microbial agent Bacillus thuringiensis israelensis (Bti) on aquatic and terrestrial ecosystems? A systematic review protocol

description: Additional file 4. Completed ROSES form.
DOI: 10.6084/m9.figshare.9783659.v1
title: MOESM4 of What are the effects of control of mosquitoes and other nematoceran Diptera using the microbial agent Bacillus thuringiensis israelensis (Bti) on aquatic and terrestrial ecosystems? A systematic review protocol

description: Additional file 4. Completed ROSES form.
DOI: 10.6084/m9.figshare.9783554
title: MOESM2 of Comparative transcriptomic analysis of a wing-dimorphic stonefly reveals candidate wing loss genes

description: Additional file 2: Table S4. All gene-clusters significantly differentially expressed across full-winged and vestigial-winged ecotypes (FDRâ â ¤â 0.01), including annotations.
DOI: 10.6084/m9.figshare.9783554.v1
title: MOESM2 of Comparative transcriptomic analysis of a wing-dimorphic stonefly reveals candidate wing loss genes

description: Additional file 2: Table S4. All gene-clusters significantly differentially expressed across full-winged and vestigial-winged ecotypes (FDRâ â ¤â 0.01), including annotations.
DOI: 10.6084/m9.figshare.9783512
title: Additional file 8: of Combining morphological and genomic evidence to resolve species diversity and study speciation processes of the Pallenopsis patagonica (Pycnogonida) species complex

description: Summary of information used for species delimitation of the Pallenopsis patagonica species complex. Table including all information used for species delimitation of the Pallenopsis patagonica species complex. For species delimitation, morphological and genetic analyses were considered. Previously published results are also included. Black filling indicates missing data. (XLS 78â kb) (XLS 78 kb)
DOI: 10.6084/m9.figshare.9783512.v1
title: Additional file 8: of Combining morphological and genomic evidence to resolve species diversity and study speciation processes of the Pallenopsis patagonica (Pycnogonida) species complex

description: Summary of information used for species delimitation of the Pallenopsis patagonica species complex. Table including all information used for species delimitation of the Pallenopsis patagonica species complex. For species delimitation, morphological and genetic analyses were considered. Previously published results are also included. Black filling indicates missing data. (XLS 78â kb) (XLS 78 kb)
DOI: 10.6084/m9.figshare.9783485
title: Additional file 4: of Combining morphological and genomic evidence to resolve species diversity and study speciation processes of the Pallenopsis patagonica (Pycnogonida) species complex

description: Morphological measurements of the Pallenopsis patagonica species complex. Table including all measured characters of all individuals used for morphometric analyses. Detailed information about ID, voucher number, sex as well as species and mitochondrial clade assignment is given. Missing values are substituted with a question mark (?). (XLS 158 kb)
DOI: 10.6084/m9.figshare.9783485.v1
title: Additional file 4: of Combining morphological and genomic evidence to resolve species diversity and study speciation processes of the Pallenopsis patagonica (Pycnogonida) species complex

description: Morphological measurements of the Pallenopsis patagonica species complex. Table including all measured characters of all individuals used for morphometric analyses. Detailed information about ID, voucher number, sex as well as species and mitochondrial clade assignment is given. Missing values are substituted with a question mark (?). (XLS 158 kb)
DOI: 10.5281/zenodo.4002201
title: Last Interglacial Sea Levels within the Gulf of Mexico and northwestern Caribbean Sea

description: This file provides a summary of the ages and elevations of previously published relative sea-level constraints during the Last Interglacial (LIG; also known as marine isotope stage 5e, MIS5e) across the Gulf of Mexico and northwestern Caribbean Sea including the Yucatan Peninsula. I used a standardized database template to compile 32 sea-level indicators including the insertion of 16 U-series ages on corals, 1 electron spin resonance age, 2 amino acid racemization ages and 26 luminescence ages.
DOI: 10.6084/m9.figshare.9783311
title: Processed genomic data

description: Data used for https://github.com/lotteanna/repeated_adaptation/<br>Associated with data https://doi.org/10.6084/m9.figshare.7217744.v1
DOI: 10.6084/m9.figshare.9783311.v1
title: Processed genomic data

description: Data used for https://github.com/lotteanna/repeated_adaptation/<br>Associated with data https://doi.org/10.6084/m9.figshare.7217744.v1
DOI: 10.6084/m9.figshare.9783299
title: МЕТОДИ ОЦІНКИ ДЕВЕЛОПЕРСЬКИХ ПРОЕКТІВ

description: <i><br></i><i>Впровадження нових законодавчих вимог щодо залучення громадськості до процесу прийняття ключових рішень щодо будівельних та девелоперських проектів вимагає доопрацювання їх методів оцінки. Наявні методи інвестиційної оцінки, оцінки впливу на довкілля, містобудівної оцінки та експертизи проектів будівництва мають ряд методологічних недоліків та застосовуються державними органами наприкінці процесу планування деяких проектів, коли простір для коректування їхньої інвестиційної ідеї вже сильно обмежений обраною ділянкою будівництва та прийнятими ключовими рішеннями щодо проекту. Тому девелоперу пропонується на початкових етапах планування визначати зону впливу девелоперського проекту та здійснювати оцінку впливу проекту в економічній, соціальній, екологічній та містобудівній сферах. Результати такої оцінки дають змогу отримати реальні вимірні аргументи для діалогу з громадськістю при подальшому проведенні громадських слухань щодо девелоперського проекту, а також можуть використовуватись у процесі реалізації проекту для управління залученням зацікавлених сторін.</i> <i> </i>
DOI: 10.6084/m9.figshare.9783299.v1
title: МЕТОДИ ОЦІНКИ ДЕВЕЛОПЕРСЬКИХ ПРОЕКТІВ

description: <i><br></i><i>Впровадження нових законодавчих вимог щодо залучення громадськості до процесу прийняття ключових рішень щодо будівельних та девелоперських проектів вимагає доопрацювання їх методів оцінки. Наявні методи інвестиційної оцінки, оцінки впливу на довкілля, містобудівної оцінки та експертизи проектів будівництва мають ряд методологічних недоліків та застосовуються державними органами наприкінці процесу планування деяких проектів, коли простір для коректування їхньої інвестиційної ідеї вже сильно обмежений обраною ділянкою будівництва та прийнятими ключовими рішеннями щодо проекту. Тому девелоперу пропонується на початкових етапах планування визначати зону впливу девелоперського проекту та здійснювати оцінку впливу проекту в економічній, соціальній, екологічній та містобудівній сферах. Результати такої оцінки дають змогу отримати реальні вимірні аргументи для діалогу з громадськістю при подальшому проведенні громадських слухань щодо девелоперського проекту, а також можуть використовуватись у процесі реалізації проекту для управління залученням зацікавлених сторін.</i> <i> </i>
DOI: 10.6084/m9.figshare.9783116
title: supplemental table s1

description: <b>Supplementa</b><b>l</b><b> table S1. </b>List of RT-PCR primers used in this study
DOI: 10.6084/m9.figshare.9783104
title: Table S1

description: (a) The XRD analytical results for the samples in the lab(b)The plot of quartz and aragonite content from different cold seep areas.
DOI: 10.6084/m9.figshare.9783104.v1
title: Table S1

description: (a) The XRD analytical results for the samples in the lab(b)The plot of quartz and aragonite content from different cold seep areas.
DOI: 10.6084/m9.figshare.9783101
title: DOS1.xlsx

description: The<b> </b><i>in situ</i> detection of authigenic carbonates at different locations at Site F
DOI: 10.6084/m9.figshare.9783080
title: noglacier

description: Two sets of experiments considering with (control) and without (sensitivity) glacier respectively were designed in WRF3.9.1 model with a resolution of 3 km.
DOI: 10.6084/m9.figshare.9783101.v1
title: DOS1.xlsx

description: The<b> </b><i>in situ</i> detection of authigenic carbonates at different locations at Site F
DOI: 10.6084/m9.figshare.9783080.v1
title: noglacier

description: Two sets of experiments considering with (control) and without (sensitivity) glacier respectively were designed in WRF3.9.1 model with a resolution of 3 km.
DOI: 10.6084/m9.figshare.9783062
title: glacier

description: Two sets of experiments considering with (control) and without (sensitivity) glacier respectively were designed in WRF3.9.1 model with a resolution of 3 km.
DOI: 10.6084/m9.figshare.9782813
title: Transcriptome of Escherichia coli K-12 (MG1655) at stationary phase in minimal medium

description: Gene expression analysis provides a lens into the cellular processes dominant in a cell at a particular point in time. Such understanding helps guide further experiments as well as providing the bedrock on which theoretical underpinnings of cellular processes emanates. In essence, gene expression analysis tells us the genes implicated in particular cellular processes and is the starting point for in-depth mechanistic studies. Two approaches operating at different levels of biological complexities are available for probing gene expression analysis, one of which is proteomics, the other is RNA-seq based transcriptome analysis. While proteomics workflow has been automated significantly over the past decade with the advent of liquid chromatography mass spectrometry, the dataset obtained pales in comparison to that available from RNA sequencing (RNA-seq). Specifically, probing the transcriptome of cells using contemporary next-generation high throughput sequencing typically generates millions of reads, which when aligned to a reference genome of the same species, tells a quantitative story of the relative expression levels of different genes in the organism. Hence, RNA-seq is the dominant technology utilized for gaining an understanding of the differential expression of genes at the global level with the assumption that mRNA abundance correlates linearly with protein abundance, hence, providing a readout of gene expression levels. This work entails the processing of a RNA-seq dataset of <i>Escherichia coli</i> K-12 (MG1655) during stationary growth in liquid minimal medium (Array Express accession number: E-GEOD-77325) using an in-house MATLAB software. A total of 3.5 million reads was processed to yield the final transcriptome dataset, which is catalogued in an Excel table detailing the gene abbreviation, description of gene function, gene sequence, and expression count. The last variable, which signifies expression level of a gene, is calculated based on the alignment of a RNA-seq read with a corresponding gene sequence. The software does not count reads that include part of the 5’ UTR of a gene. Overall, the top ten highest expressed genes of <i>E. coli</i> K-12 during stationary phase growth were ompF, fliC, ompA, fusA, tufA, ompC, metE, rpsA, ompT, and gapA. Such a catalogue of highly expressed genes speaks of the importance of outer membrane proteins, translation related proteins, and glyceraldehyde-3-phosphate dehydrogenase A in driving cellular processes during stationary phase. Overall, the dataset should provide a good reference for researchers interested in the gene expression patterns of <i>E. coli</i> K-12 during stationary phase growth, as well as providing a starting point for further investigation of differences in gene expression patterns of <i>E. coli</i> between different growth phases.<br><br>
DOI: 10.6084/m9.figshare.9782762
title: Patients dataset.xlsx

description: This dataset for our study that investigated the hypoglycaemia problem-solving ability of patients who have diabetes mellitus and factors that determine their attitudes and perceptions towards their previous events in three countries in the Middle East (Jordan, Saudi Arabia and Kuwait).
DOI: 10.6084/m9.figshare.9782729
title: Appendix 3.pdf

description: Search strategy, list of excluded studies and quality assessment. <br>
DOI: 10.6084/m9.figshare.9782729.v1
title: Appendix 3.pdf

description: Search strategy, list of excluded studies and quality assessment. <br>
DOI: 10.6084/m9.figshare.9782573
title: Additional file 9: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for relaxed-clock analysis with two clock rates, all fossil calibrations, and the western clade of Uma calibration in the Pleistocene. (XML 667 kb)
DOI: 10.6084/m9.figshare.9782570
title: Additional file 8: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for relaxed-clock analysis with two clock rates and all fossil calibrations except for the sand lizard calibration. (XML 667 kb)
DOI: 10.6084/m9.figshare.9782573.v1
title: Additional file 9: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for relaxed-clock analysis with two clock rates, all fossil calibrations, and the western clade of Uma calibration in the Pleistocene. (XML 667 kb)
DOI: 10.6084/m9.figshare.9782564
title: Additional file 7: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for relaxed-clock analysis with two clock rates and all fossil calibrations. (XML 667 kb)
DOI: 10.6084/m9.figshare.9782570.v1
title: Additional file 8: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for relaxed-clock analysis with two clock rates and all fossil calibrations except for the sand lizard calibration. (XML 667 kb)
DOI: 10.6084/m9.figshare.9782558
title: Additional file 6: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for relaxed-clock analysis with one clock rate, all fossil calibrations, and the western clade of Uma calibration in the Pleistocene. (XML 664 kb)
DOI: 10.6084/m9.figshare.9782564.v1
title: Additional file 7: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for relaxed-clock analysis with two clock rates and all fossil calibrations. (XML 667 kb)
DOI: 10.6084/m9.figshare.9782555
title: Additional file 5: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for relaxed-clock analysis with one clock rate and all fossil calibrations except for the sand lizard calibration. (XML 663 kb)
DOI: 10.6084/m9.figshare.9782549
title: Additional file 4: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for relaxed-clock analysis with one clock rate and all fossil calibrations. (XML 663 kb)
DOI: 10.6084/m9.figshare.9782558.v1
title: Additional file 6: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for relaxed-clock analysis with one clock rate, all fossil calibrations, and the western clade of Uma calibration in the Pleistocene. (XML 664 kb)
DOI: 10.6084/m9.figshare.9782546
title: Additional file 3: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: Concatenated molecular data and MrBayes block for non-clock and strict-clock phylogenetic analysis. Additional fileÂ 3 also contains the maximum clade credibility tree files for the BEAST divergence time analyses with all fossil calibrations, as shown in Fig.Â 8. (TXT 547 kb)
DOI: 10.6084/m9.figshare.9782549.v1
title: Additional file 4: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for relaxed-clock analysis with one clock rate and all fossil calibrations. (XML 663 kb)
DOI: 10.6084/m9.figshare.9782555.v1
title: Additional file 5: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for relaxed-clock analysis with one clock rate and all fossil calibrations except for the sand lizard calibration. (XML 663 kb)
DOI: 10.6084/m9.figshare.9782537
title: Additional file 2: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: GenBank accession numbers for molecular data. Identifiers of sequences accessioned at DataDryad are also included. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.9782546.v1
title: Additional file 3: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: Concatenated molecular data and MrBayes block for non-clock and strict-clock phylogenetic analysis. Additional fileÂ 3 also contains the maximum clade credibility tree files for the BEAST divergence time analyses with all fossil calibrations, as shown in Fig.Â 8. (TXT 547 kb)
DOI: 10.6084/m9.figshare.9782537.v1
title: Additional file 2: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: GenBank accession numbers for molecular data. Identifiers of sequences accessioned at DataDryad are also included. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.9782522
title: Additional file 12: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for multispecies coalescent analysis with the sand calibration and the Pleistocene calibration. (XML 312 kb)
DOI: 10.6084/m9.figshare.9782516
title: Additional file 11: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for multispecies coalescent analysis with the sand calibration and the Pliocene calibration. (XML 312 kb)
DOI: 10.6084/m9.figshare.9782522.v1
title: Additional file 12: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for multispecies coalescent analysis with the sand calibration and the Pleistocene calibration. (XML 312 kb)
DOI: 10.6084/m9.figshare.9782510
title: Additional file 10: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for multispecies coalescent analysis with only the sand lizard calibration. (XML 311 kb)
DOI: 10.6084/m9.figshare.9782510.v1
title: Additional file 10: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for multispecies coalescent analysis with only the sand lizard calibration. (XML 311 kb)
DOI: 10.6084/m9.figshare.9782516.v1
title: Additional file 11: of The first known fossil Uma: ecological evolution and the origins of North American fringe-toed lizards

description: BEAST xml file for multispecies coalescent analysis with the sand calibration and the Pliocene calibration. (XML 312 kb)
DOI: 10.6084/m9.figshare.9782504
title: Additional file 1: of Deciphering DNA methylation signatures of pancreatic cancer and pancreatitis

description: Table S1. List of genes presenting differential DNA methylation between healthy pancreas, chronic pancreatitis or pancreatic cancer. CP: chronic pancreatitis; HiR: high PT-risk; IPMN: papillary mucinous neoplasms; PIN: pancreatic intraepithelial neoplasias; PT: pancreatic adenocarcinoma; PTX: pancreatic adenocarcinoma xenografts. Hyper:DNA hypermethylation; hypo: DNA hypomethylation; –: no change; inv.: invasive; *: non-significant; #: cohort size &lt;10; §: p16INK4a specific region; $: p14ARF specific region; £: associated with longer survival. Grey background: genes analysed in both primary and liquid biopsies (XLS 57 kb)
DOI: 10.6084/m9.figshare.9782492
title: Actin filaments in mouse kidney sections

description: 3D-pSIM images of Actin filaments in mouse kidney sections<br>Raw microscope image from conventional microscope GE DeltaVision OMX SR, SIM reconstruction result via the associated software SoftWoRx and the corresponding pSIM images.<br>Metadata file of the raw images are accompanied.<br>Pixel size: 80nm in raw data and 40 nm in high-resolution reconstructed data
DOI: 10.6084/m9.figshare.9782498
title: Additional file 1: of Most of anti-glycolipid IgG-antibodies associated to neurological disorders occur without their IgM counterpart

description: Contingency tables for statistical analysis of the different comparisons. Tables were exported from the analyses performed in Graph Pad Prism 6. (XLS 59 kb)