cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15121/1812319
title: GOOML Big Kahuna Forecast Modeling and Genetic Optimization Files

description: This submission includes example files associated with the Geothermal Operational Optimization using Machine Learning (GOOML) Big Kahuna fictional power plant, which uses synthetic data to model a fictional power plant. A forecast was produced using the GOOML data model framework and fictional input data, and a genetic optimization is included which determines optimal flash plant parameters. The inputs and outputs associated with the forecast and genetic optimization are included. The input and output files consist of data, configuration files, and plots. A link to the Physics-Guided Neural Networks (phygnn) GitHub repository is also included, which augments a traditional neural network loss function with a generic loss term that can be used to guide the neural network to learn physical or theoretical constraints. phygnn is used by the GOOML framework to help integrate its machine learning models into the relevant physics and engineering applications. Note that the data included in this submission are intended to provide a demonstration of GOOML's capabilities. Additional files that have not been released to the public are needed for users to run these models and reproduce these results. Units can be found in the readme data resource.
DOI: 10.17894/ucph.9f722b4c-df81-4faf-b509-e8f570f161e8
title: Rhino horn consumers
DOI: 10.6084/m9.figshare.16840972.v1
title: HIV-gp120

description: Deciphering the glycosylation of viral envelope (Env) glycoprotein is critical for evaluating viral invasion and the host’s immune response, and developing preventive vaccines and antiviral drugs. However, the site-specific N- or O-glycosylation characterization of these highly glycosylated Env proteins is still very challenging, although glycoproteomics has made significant advances in sample preparation, mass spectrometry fragmentation technique, and data analysis software. Here, we presented a hybrid dissociation technique, EThcD-sceHCD, by combining electron transfer/higher-energy collisional dissociation (EThcD) and stepped collision energy/higher-energy collisional dissociation (sceHCD), and integrated EThcD-sceHCD into a sequential glycoproteomic workflow (N/O-GlycoHybrid). Using this workflow, we characterized the site-specific N/O-glycosylation of the human immunodeficiency virus type 1 (HIV-1) Env protein gp120. Comparing with commonly used fragmentation mode (e.g. HCD, sceHCD, EThcD), EThcD-sceHCD was more reliable at generating fragment ion types sufficient for the robust characterization of intact N/O-glycopeptide, and can achieve more in-depth intact glycopeptides identification. Finally, eighteen N-glycosites and five O-glycosites with attached glycans were assigned unambiguously from heavily glycosylated gp120 using EThcD-sceHCD-MS/MS. These results indicated that the N/O-GlycoHybrid can achieve better performance and simultaneous analysis of the N/O-glycosylation of a highly glycosylated protein containing many potential glycosites in one process. Knowledge of the glycosylation landscape of the Env glycoprotein will be useful for the development of vaccines and drugs targeted toward HIV-1.
DOI: 10.6084/m9.figshare.16840972
title: HIV-gp120

description: Deciphering the glycosylation of viral envelope (Env) glycoprotein is critical for evaluating viral invasion and the host’s immune response, and developing preventive vaccines and antiviral drugs. However, the site-specific N- or O-glycosylation characterization of these highly glycosylated Env proteins is still very challenging, although glycoproteomics has made significant advances in sample preparation, mass spectrometry fragmentation technique, and data analysis software. Here, we presented a hybrid dissociation technique, EThcD-sceHCD, by combining electron transfer/higher-energy collisional dissociation (EThcD) and stepped collision energy/higher-energy collisional dissociation (sceHCD), and integrated EThcD-sceHCD into a sequential glycoproteomic workflow (N/O-GlycoHybrid). Using this workflow, we characterized the site-specific N/O-glycosylation of the human immunodeficiency virus type 1 (HIV-1) Env protein gp120. Comparing with commonly used fragmentation mode (e.g. HCD, sceHCD, EThcD), EThcD-sceHCD was more reliable at generating fragment ion types sufficient for the robust characterization of intact N/O-glycopeptide, and can achieve more in-depth intact glycopeptides identification. Finally, eighteen N-glycosites and five O-glycosites with attached glycans were assigned unambiguously from heavily glycosylated gp120 using EThcD-sceHCD-MS/MS. These results indicated that the N/O-GlycoHybrid can achieve better performance and simultaneous analysis of the N/O-glycosylation of a highly glycosylated protein containing many potential glycosites in one process. Knowledge of the glycosylation landscape of the Env glycoprotein will be useful for the development of vaccines and drugs targeted toward HIV-1.
DOI: 10.6084/m9.figshare.16840975
title: The nationwide spatial distribution of Australian bulk-billing only medical practices- mid 2020

description: The physical addresses of bulk-billing only medical practices and geographical coordinates
DOI: 10.6084/m9.figshare.16840975.v1
title: The nationwide spatial distribution of Australian bulk-billing only medical practices- mid 2020

description: The physical addresses of bulk-billing only medical practices and geographical coordinates
DOI: 10.5281/zenodo.5587402
title: processed datasets of deepsignal-plant

description: processed datasets of deepsignal-plant
DOI: 10.25919/7d4w-z176
title: Parkes observations for project P595 semester 2021OCTS_01

description: We propose to continue the PULSE@Parkes project in which high school students from Australia and around the World use the Parkes radio telescope in a remote observing model to observe and analyse pulsar data. The data from some PULSE@Parkes observations are used to support the space missions, other observations supplement the P456 Pulsar Timing Array project and the remainder were chosen in order to make a detailed analysis of pulsar timing irregularities and intermittency.
DOI: 10.25919/w08d-tp07
title: Parkes observations for project P1032 semester 2021OCTS_01

description: This project aims to continue to perform rapid measurements of relativistic parameters of southern binary pulsar systems using data from the Parkes Ultra Wideband Low (UWL) receiver and the MeerKAT telescope thereby enabling measurement of their component masses and in some cases, test theories of gravity. We will use the UWL data to obtain significant orbital coverage and timing baseline on these pulsars and obtain important constraints on orbital and temporal DM variations that will help in identifying the nature of the companion star. We will then use MeerKAT data at crucial orbital phases to improve our chances of measuring the relativistic parameters. Increase in the number of measured NS masses has profound implications for NS internal structure and for stellar and binary evolution physics. From this semester, we are converting this proposal into a ``Large project" proposal.
DOI: 10.6084/m9.figshare.16821439.v3
title: Genotyping data for Quercus aliena and Quercus dentata

description: Genotyping data for all 778 samples scored using Genemarker v. 2.2. Then normalzed the score by FlexiBinv2 in TXT format.
DOI: 10.5517/ccdc.csd.cc28k5vw
title: CCDC 2101888: Experimental Crystal Structure Determination

description: Related Article: Zhengxin Kang, Fan Lv, Qinghua Wu, Heng Li, Zhongxin Li, Feng-xi Wu, Zhaoyun Wang, Lijuan Jiao, Erhong Hao|2021|Org.Lett.|23|7986|doi:10.1021/acs.orglett.1c02996
DOI: 10.5517/ccdc.csd.cc28k5yz
title: CCDC 2101891: Experimental Crystal Structure Determination

description: Related Article: Zhengxin Kang, Fan Lv, Qinghua Wu, Heng Li, Zhongxin Li, Feng-xi Wu, Zhaoyun Wang, Lijuan Jiao, Erhong Hao|2021|Org.Lett.|23|7986|doi:10.1021/acs.orglett.1c02996
DOI: 10.5517/ccdc.csd.cc28kkhx
title: CCDC 2102249: Experimental Crystal Structure Determination

description: Related Article: Yunqiao Guo, Die Zhang, Ting Zheng, Ling Huang, Daojiang Gao, Jian Bi, Guohong Zou|2021|Cryst.Growth Des.|21|5976|doi:10.1021/acs.cgd.1c00931
DOI: 10.5517/ccdc.csd.cc28kkjy
title: CCDC 2102250: Experimental Crystal Structure Determination

description: Related Article: Yunqiao Guo, Die Zhang, Ting Zheng, Ling Huang, Daojiang Gao, Jian Bi, Guohong Zou|2021|Cryst.Growth Des.|21|5976|doi:10.1021/acs.cgd.1c00931
DOI: 10.6084/m9.figshare.16841070
title: Additional file 8 of Differential expression analysis using a model-based gene clustering algorithm for RNA-seq data

description: Additional file 8. Concordance rate between methods for Pickrell data. This file provides additional information given in Table 4. The “Sheet1” shows the percentage of genes assigned to the same pattern that are common between the two methods. For example, DESeq2 and TCC have a total of 51,812 similar patterns, and the concordance rate is therefore calculated as 51,812/51,910 = 0.9981. The “Sheet2” shows the results for each cluster obtained using MBCdeg-based methods: (a–c) MBCdeg1 with K = 3–5 and (d–f) MBCdeg2 with K = 3–5. The number of genes (column B), centers m (columns C–E), L2 Norm (column F), and the patterns assigned (column G) for each cluster are shown.
DOI: 10.6084/m9.figshare.16841070.v1
title: Additional file 8 of Differential expression analysis using a model-based gene clustering algorithm for RNA-seq data

description: Additional file 8. Concordance rate between methods for Pickrell data. This file provides additional information given in Table 4. The “Sheet1” shows the percentage of genes assigned to the same pattern that are common between the two methods. For example, DESeq2 and TCC have a total of 51,812 similar patterns, and the concordance rate is therefore calculated as 51,812/51,910 = 0.9981. The “Sheet2” shows the results for each cluster obtained using MBCdeg-based methods: (a–c) MBCdeg1 with K = 3–5 and (d–f) MBCdeg2 with K = 3–5. The number of genes (column B), centers m (columns C–E), L2 Norm (column F), and the patterns assigned (column G) for each cluster are shown.
DOI: 10.6084/m9.figshare.16841102
title: Additional file 1 of One-year follow-up after treatment of proximal and/or middle one-third humeral shaft fractures with a helical plate: healing rates, complications and functional outcome measures

description: Additional file 1.
DOI: 10.6084/m9.figshare.16841102.v1
title: Additional file 1 of One-year follow-up after treatment of proximal and/or middle one-third humeral shaft fractures with a helical plate: healing rates, complications and functional outcome measures

description: Additional file 1.
DOI: 10.5519/qd.3q31xmma
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.25919/efhc-rp08
title: Parkes observations for project P1068 semester 2021APRS_27

description: In the fast-moving world of Fast Radio Bursts (FRBs), the critical question of what fraction of FRBs emit repeat bursts remains unanswered. Of order 20 repeating FRBs are now known, and their spectro-temporal properties hint at differences with apparently non-repeating bursts - the poor statistics preclude a definitive diagnosis. FRB 180301 is a promising source for further study for multiple reasons: it is an active repeater similar to the FRB 121102 and the most active FRB source visible to Parkes, and it shows diverse polarization properties across the repeat bursts. We have detected multiple repeat bursts from this source in our campaign last semester. The signal-to-noise ratio (S/N) of these detections are not sufficiently significant to measure their spectro-polarimetric properties. We request Parkes observations with the UWL receiver to continue the monitoring of this FRB source in order to characterize the broadband emission properties. Some of the key goals for these future observations are: to constrain the repetition rate, identify any variation of pulse characteristics over time, measure the polarimetric properties and provide insight into the emission mechanisms. The diverse polarization angle swings in the FAST detections and significant circular polarization in the original Parkes detection indicate the progenitor is embedded in an extreme magneto-ionic environment with complex field structure that has not been seen before. Understanding these diverse polarization properties from this source could be the key to distinguish repeater sources from the apparent non-repeaters ones.
DOI: 10.6084/m9.figshare.16841319.v1
title: Additional file 6 of High-throughput and affordable genome-wide methylation profiling of circulating cell-free DNA by methylated DNA sequencing (MeD-seq) of LpnPI digested fragments

description: Additional file 6: Supplementary Tables. Table S1 - Spearman correlations comparing inputs of MeD-seq. Table S2 - Isolation and sequencing parameters of all samples.
DOI: 10.6084/m9.figshare.16841325.v1
title: Additional file 1 of A prospective cohort study providing insights for markers of adverse pregnancy outcome in older mothers

description: Additional file 1.
DOI: 10.6084/m9.figshare.16841312.v1
title: Additional file 11 of Experimental and computational modeling for signature and biomarker discovery of renal cell carcinoma progression

description: Additional file 11: Supplementary Table S1.
DOI: 10.6084/m9.figshare.16841315.v1
title: Additional file 12 of Experimental and computational modeling for signature and biomarker discovery of renal cell carcinoma progression

description: Additional file 12: Supplementary Table S2.
DOI: 10.6084/m9.figshare.16841318.v1
title: Additional file 13 of Experimental and computational modeling for signature and biomarker discovery of renal cell carcinoma progression

description: Additional file 13: Supplementary Table S3.
DOI: 10.6084/m9.figshare.14195924
title: Monthly direct and indirect greenhouse gases emissions from household consumption in the major Japanese cities

description: Including both direct and indirect emission inventories, direct emission intensities, household size information and mapping process.
DOI: 10.6084/m9.figshare.14195924.v4
title: Monthly direct and indirect greenhouse gases emissions from household consumption in the major Japanese cities

description: Including both direct and indirect emission inventories, direct emission intensities, household size information and mapping process.
DOI: 10.6084/m9.figshare.16841201.v1
title: Additional file 2 of The contributions of public health policies and healthcare quality to gender gap and country differences in life expectancy in the UK

description: Additional file 2: Table A1. Absolute number of avoidable and non-avoidable causes of death in the UK in 2001-2003 and 2014-2016, stratified by sex. Table A2. Results of Arriaga’s decomposition for the UK. Table A3. Results of Arriaga’s decomposition for England & Wales. Table A4. Results of Arriaga’s decomposition for Northern Ireland. Table A5. Results of Arriaga’s decomposition for Scotland. Table A6. Age- and cause-specific contributions to gap in life expectancy between England & Wales vs. Northern Ireland. Table A7. Age- and cause-specific contributions to gap in life expectancy between England & Wales vs. Scotland.
DOI: 10.6084/m9.figshare.16841169.v1
title: Additional file 3 of Access to primary care and cognitive impairment: results from a national community study of aging Americans

description: Additional file 3.
DOI: 10.6084/m9.figshare.16841166.v1
title: Additional file 2 of Access to primary care and cognitive impairment: results from a national community study of aging Americans

description: Additional file 2.
DOI: 10.6084/m9.figshare.16841163.v1
title: Additional file 1 of Access to primary care and cognitive impairment: results from a national community study of aging Americans

description: Additional file 1.
DOI: 10.6084/m9.figshare.16841160.v1
title: Additional file 2 of Unusual course of disease and genetic profile in Li-Fraumeni syndrome-associated osteosarcoma – a case report

description: Additional file 2. Detailed list of potentially relevant genes affected by different CNA profile. List of potentially affected genes due to CNA and potentially affected genes due to differences to previously reported CNA. Validated (candidate) oncogenes in OS according to Rickel et al. (2017) were depicted in fat letters.
DOI: 10.6084/m9.figshare.16841159.v1
title: Additional file 1 of Platelet-rich plasma treatment improves postoperative recovery in patients with pilonidal sinus disease: a randomized controlled clinical trial

description: Additional file 1. : Consent Form and Follow-up Form.
DOI: 10.6084/m9.figshare.16841142.v1
title: Additional file 2 of Plasma leakage in dengue: a systematic review of prospective observational studies

description: Additional file 2. Quality assessment of each included study.
DOI: 10.6084/m9.figshare.16841325
title: Additional file 1 of A prospective cohort study providing insights for markers of adverse pregnancy outcome in older mothers

description: Additional file 1.
DOI: 10.6084/m9.figshare.16841319
title: Additional file 6 of High-throughput and affordable genome-wide methylation profiling of circulating cell-free DNA by methylated DNA sequencing (MeD-seq) of LpnPI digested fragments

description: Additional file 6: Supplementary Tables. Table S1 - Spearman correlations comparing inputs of MeD-seq. Table S2 - Isolation and sequencing parameters of all samples.
DOI: 10.6084/m9.figshare.16841318
title: Additional file 13 of Experimental and computational modeling for signature and biomarker discovery of renal cell carcinoma progression

description: Additional file 13: Supplementary Table S3.
DOI: 10.6084/m9.figshare.16841315
title: Additional file 12 of Experimental and computational modeling for signature and biomarker discovery of renal cell carcinoma progression

description: Additional file 12: Supplementary Table S2.
DOI: 10.6084/m9.figshare.16841312
title: Additional file 11 of Experimental and computational modeling for signature and biomarker discovery of renal cell carcinoma progression

description: Additional file 11: Supplementary Table S1.
DOI: 10.6084/m9.figshare.16841201
title: Additional file 2 of The contributions of public health policies and healthcare quality to gender gap and country differences in life expectancy in the UK

description: Additional file 2: Table A1. Absolute number of avoidable and non-avoidable causes of death in the UK in 2001-2003 and 2014-2016, stratified by sex. Table A2. Results of Arriaga’s decomposition for the UK. Table A3. Results of Arriaga’s decomposition for England & Wales. Table A4. Results of Arriaga’s decomposition for Northern Ireland. Table A5. Results of Arriaga’s decomposition for Scotland. Table A6. Age- and cause-specific contributions to gap in life expectancy between England & Wales vs. Northern Ireland. Table A7. Age- and cause-specific contributions to gap in life expectancy between England & Wales vs. Scotland.
DOI: 10.6084/m9.figshare.16841169
title: Additional file 3 of Access to primary care and cognitive impairment: results from a national community study of aging Americans

description: Additional file 3.
DOI: 10.6084/m9.figshare.16841166
title: Additional file 2 of Access to primary care and cognitive impairment: results from a national community study of aging Americans

description: Additional file 2.
DOI: 10.6084/m9.figshare.16841163
title: Additional file 1 of Access to primary care and cognitive impairment: results from a national community study of aging Americans

description: Additional file 1.
DOI: 10.6084/m9.figshare.16841160
title: Additional file 2 of Unusual course of disease and genetic profile in Li-Fraumeni syndrome-associated osteosarcoma – a case report

description: Additional file 2. Detailed list of potentially relevant genes affected by different CNA profile. List of potentially affected genes due to CNA and potentially affected genes due to differences to previously reported CNA. Validated (candidate) oncogenes in OS according to Rickel et al. (2017) were depicted in fat letters.
DOI: 10.6084/m9.figshare.16841159
title: Additional file 1 of Platelet-rich plasma treatment improves postoperative recovery in patients with pilonidal sinus disease: a randomized controlled clinical trial

description: Additional file 1. : Consent Form and Follow-up Form.
DOI: 10.6084/m9.figshare.16841142
title: Additional file 2 of Plasma leakage in dengue: a systematic review of prospective observational studies

description: Additional file 2. Quality assessment of each included study.
DOI: 10.6084/m9.figshare.16841400
title: S8Text from Immune lag is a major cost of prokaryotic adaptive immunity during viral outbreaks

description: Supplementary Text
DOI: 10.6084/m9.figshare.16841400.v1
title: S8Text from Immune lag is a major cost of prokaryotic adaptive immunity during viral outbreaks

description: Supplementary Text
DOI: 10.5281/zenodo.5548470
title: 5A-6B RNA-Seq data

description: RNA Seq data 5A-6B
DOI: 10.5281/zenodo.5548469
title: 5A-6B RNA-Seq data

description: RNA Seq data 5A-6B
DOI: 10.15468/wjc3q6
title: Checklist of extant species recorded in Preah Roka Wildlife Sanctuary, Cambodia

description: A checklist of all extant species recorded in Preah Roka Wildlife Sanctuary, Preah Vihear Province, Cambodia. The dataset includes Khmer vernacular names.
DOI: 10.14457/cu.the.2000.172
title: The effect to cloud point on the foaming of nonionic/anionic surfactant mixtures
DOI: 10.5281/zenodo.5576799
title: 10 years of Human-NAO Interaction Research

description: The evolving field of human-robot interaction (HRI) necessitates that we better understand how social robots operate and interact with humans. This scoping review provides an overview of about 300 research works focusing on the use of the NAO robot from 2010 to 2020. This study presents one of the most extensive and inclusive pieces of evidence on the deployment of the humanoid NAO robot and its global reach.
DOI: 10.5281/zenodo.5576798
title: 10 years of Human-NAO Interaction Research

description: The evolving field of human-robot interaction (HRI) necessitates that we better understand how social robots operate and interact with humans. This scoping review provides an overview of about 300 research works focusing on the use of the NAO robot from 2010 to 2020. This study presents one of the most extensive and inclusive pieces of evidence on the deployment of the humanoid NAO robot and its global reach.
DOI: 10.5517/ccdc.csd.cc26tw64
title: CCDC 2050656: Experimental Crystal Structure Determination

description: Related Article: Jia Feng, Limin Wang, Xiaoping Xue, Zengyin Chao, Biqiong Hong, Zhenhua Gu|2021|Org.Lett.|23|8056|doi:10.1021/acs.orglett.1c03070
DOI: 10.5517/ccdc.csd.cc26tw86
title: CCDC 2050658: Experimental Crystal Structure Determination

description: Related Article: Jia Feng, Limin Wang, Xiaoping Xue, Zengyin Chao, Biqiong Hong, Zhenhua Gu|2021|Org.Lett.|23|8056|doi:10.1021/acs.orglett.1c03070
DOI: 10.5517/ccdc.csd.cc26tw97
title: CCDC 2050659: Experimental Crystal Structure Determination

description: Related Article: Jia Feng, Limin Wang, Xiaoping Xue, Zengyin Chao, Biqiong Hong, Zhenhua Gu|2021|Org.Lett.|23|8056|doi:10.1021/acs.orglett.1c03070
DOI: 10.5517/ccdc.csd.cc27d6d8
title: CCDC 2067309: Experimental Crystal Structure Determination

description: Related Article: Lan Wei, Shiteng Ding, Mingqing Liu, Zongxiang Yu, Yuanjing Xiao|2021|Org.Lett.|23|7718|doi:10.1021/acs.orglett.1c02646
DOI: 10.5517/ccdc.csd.cc24nypg
title: CCDC 1986346: Experimental Crystal Structure Determination

description: Related Article: Jindou Yang, Hai T. Dong, Mi Sook Seo, Virginia A. Larson, Yong-Min Lee, Jason Shearer, Nicolai Lehnert, Wonwoo Nam|2021|J.Am.Chem.Soc.|143|16943|doi:10.1021/jacs.1c04919