cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3866515_d2.v1
title: Additional file 11:  of 
                     De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance

description: Fusion read relative frequency in breast cancer subtypes. Expression for 79 breast cancer specific fusion transcripts as well as those associated wild-type 5â ˛- and 3- reference genes is summarized in the file. Expression is the normalized RNA-Seq read counts as estimated using RSEM and followed by upper quartile normalization. Fusion transcripts were divided into two breast cancer sub-type groups: ER and/or HER2 positive and triple negative. The first sheet in the excel file contains the data columns and a key describing the data is on the second excel sheet. (XLSX 39Â kb)
DOI: 10.5287/ora-mnwaqmxey
title: PARSEME GRC 2024 (Xenophon, Lysias, Plato)

description: Dataset related to the PARSEME GRC initiative, release 1 of the corpus
DOI: 10.6084/m9.figshare.c.3866515_d2
title: Additional file 11:  of 
                     De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance

description: Fusion read relative frequency in breast cancer subtypes. Expression for 79 breast cancer specific fusion transcripts as well as those associated wild-type 5â ˛- and 3- reference genes is summarized in the file. Expression is the normalized RNA-Seq read counts as estimated using RSEM and followed by upper quartile normalization. Fusion transcripts were divided into two breast cancer sub-type groups: ER and/or HER2 positive and triple negative. The first sheet in the excel file contains the data columns and a key describing the data is on the second excel sheet. (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.c.3866527_d1.v1
title: Additional file 1: of Are the anomalous vertebral arteries more hypoplastic?: retrospective linear mixed model approach

description: Are the anomalous vertebral arteries more hypoplastic. Raw data for the statistical analyses. Description of data: id, identification; gender; side (1: right, 2: left); V1, vertebral artery with an anomalous origin from the aorta (1: yes, 0: no); V2, vertebral artery not passing through the 6th cervical transverse foramen (1: yes, 0: no); Dia_VA, diameter of the vertebral artery (mm). (CSV 10 kb)
DOI: 10.6084/m9.figshare.c.3866515_d3.v1
title: Additional file 1:  of 
                     De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance

description: Summary statistics on raw and processed RNA-Seq data from the 55 breast samples used in this study. Additional columns contain statistics on assembled contigs, initial and final number of chimeric transcripts after filtering. The first sheet in the excel file contains the data columns and a key describing the data is on the second excel sheet. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3866527_d1
title: Additional file 1: of Are the anomalous vertebral arteries more hypoplastic?: retrospective linear mixed model approach

description: Are the anomalous vertebral arteries more hypoplastic. Raw data for the statistical analyses. Description of data: id, identification; gender; side (1: right, 2: left); V1, vertebral artery with an anomalous origin from the aorta (1: yes, 0: no); V2, vertebral artery not passing through the 6th cervical transverse foramen (1: yes, 0: no); Dia_VA, diameter of the vertebral artery (mm). (CSV 10 kb)
DOI: 10.6084/m9.figshare.c.3866515_d3
title: Additional file 1:  of 
                     De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance

description: Summary statistics on raw and processed RNA-Seq data from the 55 breast samples used in this study. Additional columns contain statistics on assembled contigs, initial and final number of chimeric transcripts after filtering. The first sheet in the excel file contains the data columns and a key describing the data is on the second excel sheet. (XLSX 18Â kb)
DOI: 10.5284/1124519
title: Images from a Building Recording Survey (Level 2) of Former Public Toilets, North Road, Durham, 2023 to 2024

description: This collection consists of images from a building recording survey (level 2) by NB Architecture of the former public toilets at North Road, Durham, between 2023 and 2024. This is ahead of the partial demolition of existing former toilets & refurbishment with addition of first floor over to form a cafe.
DOI: 10.6084/m9.figshare.c.3866515_d6.v1
title: Additional file 4:  of 
                     De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance

description: Cancer specific in-frame fusions where at least one protein domain from each (5′ and 3′) of the participating genes is covered by the ORFs involved in the chimera formation. Protein domain names (as defined by SMART database) are present in columns K and T. The first sheet in the excel file contains the data columns and a key describing the data is on the second excel sheet. (XLSX 115 kb)
DOI: 10.6084/m9.figshare.c.3866533_d3
title: Additional file 12: of Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters

description: Comparison of gene content between characterized secondary metabolism gene clusters and orthologous C. higginsianum clusters (.xlsx) (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3866554_d2.v1
title: Additional file 2 of Surface EMG signals in very late-stage of Duchenne muscular dystrophy: a case study

description: Raw sEMG signals during the triceps MVICs. MAT file containing two vectors of data (30001x1) of the raw sEMG signals of the biceps (EMGb) and the triceps (EMGt). Data was measured at 1 kHz. (MAT 424 kb)
DOI: 10.6084/m9.figshare.c.3866554_d1
title: Additional file 1 of Surface EMG signals in very late-stage of Duchenne muscular dystrophy: a case study

description: Raw sEMG signals during the biceps MVICs. MAT file containing two vectors of data (30001x1) of the raw sEMG signals of the biceps (EMGb) and the triceps (EMGt). Data was measured at 1 kHz. (MAT 421 kb)
DOI: 10.6084/m9.figshare.c.3866515_d6
title: Additional file 4:  of 
                     De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance

description: Cancer specific in-frame fusions where at least one protein domain from each (5′ and 3′) of the participating genes is covered by the ORFs involved in the chimera formation. Protein domain names (as defined by SMART database) are present in columns K and T. The first sheet in the excel file contains the data columns and a key describing the data is on the second excel sheet. (XLSX 115 kb)
DOI: 10.6084/m9.figshare.c.3866554_d2
title: Additional file 2 of Surface EMG signals in very late-stage of Duchenne muscular dystrophy: a case study

description: Raw sEMG signals during the triceps MVICs. MAT file containing two vectors of data (30001x1) of the raw sEMG signals of the biceps (EMGb) and the triceps (EMGt). Data was measured at 1 kHz. (MAT 424 kb)
DOI: 10.6084/m9.figshare.c.3866554_d3
title: Additional file 3 of Surface EMG signals in very late-stage of Duchenne muscular dystrophy: a case study

description: Raw sEMG signals during the biceps SVICs. MAT file containing two vectors of data (59806x1) of the raw sEMG signals of the biceps (EMGb) and the triceps (EMGt). Data was measured at 1 kHz. (MAT 854 kb)
DOI: 10.6084/m9.figshare.c.3866515_d7.v1
title: Additional file 5:  of 
                     De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance

description: Cancer specific in-frame fusions where the 3′ partner gene is up regulated by &gt;2X relative to the intact gene in normal tissue samples. Expression is the normalized RNA-Seq read counts as estimated using RSEM and followed by upper quartile normalization. Expression fold change for the 3′- gene is present in column U. The first sheet in the excel file contains the data columns and a key describing the data is on the second excel sheet. (XLSX 113 kb)
DOI: 10.6084/m9.figshare.c.3866515_d7
title: Additional file 5:  of 
                     De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance

description: Cancer specific in-frame fusions where the 3′ partner gene is up regulated by &gt;2X relative to the intact gene in normal tissue samples. Expression is the normalized RNA-Seq read counts as estimated using RSEM and followed by upper quartile normalization. Expression fold change for the 3′- gene is present in column U. The first sheet in the excel file contains the data columns and a key describing the data is on the second excel sheet. (XLSX 113 kb)
DOI: 10.6084/m9.figshare.c.3866554_d4
title: Additional file 4 of Surface EMG signals in very late-stage of Duchenne muscular dystrophy: a case study

description: Raw sEMG signals during the triceps SVICs. MAT file containing two vectors of data (59706x1) of the raw sEMG signals of the biceps (EMGb) and the triceps (EMGt). Data was measured at 1 kHz. (MAT 853 kb)
DOI: 10.15468/dl.uda65b
title: Occurrence Download

description: A dataset containing 926 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chelidonichthys obscurus (Walbaum, 1792)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 926 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039324-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3866563_d3.v1
title: Additional file 1: of Performance of risk prediction for inflammatory bowel disease based on genotyping platform and genomic risk score method

description: Members of the International IBD Genetics Consortium. (XLS 48Â kb)
DOI: 10.6084/m9.figshare.c.3866563_d3
title: Additional file 1: of Performance of risk prediction for inflammatory bowel disease based on genotyping platform and genomic risk score method

description: Members of the International IBD Genetics Consortium. (XLS 48Â kb)
DOI: 10.17632/bgmftbm8zt.1
title: Tree leaf Classification Dataset

description: This dataset contains high-quality images of tree leaves from three species: Neem, Jujube, and Bougainvillea. Designed for machine learning and deep learning applications. The dataset is ideal for research in plant species identification.
DOI: 10.6084/m9.figshare.c.3866515_d10.v1
title: Additional file 8:  of 
                     De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance

description: Detailed information for gene-desert-I and gene-desert-II chimeric transcripts. The first sheet of the excel file contains the key defining column entries. The data for cancer specific, normal control and shared chimeric transcripts is presented separately in second, third and fourth sheets, respectively. Cells in the gene name columns (‘geneName1’ and ‘geneName2’) with value “none” represent gene-desert regions. (XLSX 72 kb)
DOI: 10.17632/bgmftbm8zt.2
title: Tree leaf Classification Dataset

description: This dataset contains high-quality images of tree leaves from three species: Neem, Jujube, and Bougainvillea. Designed for machine learning and deep learning applications. The dataset is ideal for research in plant species identification.
DOI: 10.6084/m9.figshare.c.3866515_d11.v1
title: Additional file 9:  of 
                     De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance

description: Fusion read frequency for 79 breast cancer specific fusion-protein transcripts relative to total reads. Expression for fusion transcripts, as well as, those associated wild-type 5′- and 3′- reference transcripts is summarized in the file. Expression is the normalized RNA-Seq read counts as estimated using RSEM followed by upper quartile normalization. Fusion read frequency is shown in column H. The first sheet in the excel file contains the data columns and a key describing the data is on the second excel sheet. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3866515_d10
title: Additional file 8:  of 
                     De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance

description: Detailed information for gene-desert-I and gene-desert-II chimeric transcripts. The first sheet of the excel file contains the key defining column entries. The data for cancer specific, normal control and shared chimeric transcripts is presented separately in second, third and fourth sheets, respectively. Cells in the gene name columns (‘geneName1’ and ‘geneName2’) with value “none” represent gene-desert regions. (XLSX 72 kb)
DOI: 10.6084/m9.figshare.c.3866515_d11
title: Additional file 9:  of 
                     De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance

description: Fusion read frequency for 79 breast cancer specific fusion-protein transcripts relative to total reads. Expression for fusion transcripts, as well as, those associated wild-type 5′- and 3′- reference transcripts is summarized in the file. Expression is the normalized RNA-Seq read counts as estimated using RSEM followed by upper quartile normalization. Fusion read frequency is shown in column H. The first sheet in the excel file contains the data columns and a key describing the data is on the second excel sheet. (XLSX 19 kb)
DOI: 10.15468/dl.nh7k7r
title: Occurrence Download

description: A dataset containing 10036 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Acris gryllus (LeConte, 1825))"
 ]
}

 The dataset includes 10036 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039325-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qhxdc
title: Occurrence Download

description: A dataset containing 366 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Nylanderia fulva (Mayr, 1862)"
 ]
}

 The dataset includes 366 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039326-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzfxha
title: Occurrence Download

description: A dataset containing 546 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chelon auratus (Risso, 1810)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 546 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039327-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3866533_d24
title: Additional file 7: of Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters

description: Correspondence between old and new gene IDs. (XLSX 359 kb)
DOI: 10.6084/m9.figshare.c.3866533_d25
title: Additional file 8: of Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters

description: (A) Gene category predictions and transcriptomic analysis by RNA-Seq of four developmental stages of C. higginsianum. VA: appressoria in vitro, PA: appressoria in planta, BP: biotrophic phase, NP: necrotrophic phase. (B) Annotation of secondary metabolism key genes and clusters. (XLSX 4943 kb)
DOI: 10.15468/dl.492m9k
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-8.20955 36.78423,-7.53261 36.78423,-7.53261 37.1301,-8.20955 37.1301,-8.20955 36.78423))",
 "HasCoordinate is true",
 "TaxonKey is Zostera marina L."
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039328-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.akyjaj
title: Occurrence Download

description: A dataset containing 407 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma annulatum Cope, 1886)"
 ]
}

 The dataset includes 407 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039329-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/xzjppbmn58.1
title: Contribution of mozambioside roasting products to coffee´s bitter taste

description: This project was conceived and realized at the Leibniz Institute for Food Systems Biology at the Technical University of Munich, Lise-Meitner Str. 34, 85354 Freising, Germany.
Please refer to the paper "Contribution of mozambioside roasting products to coffee´s bitter taste, published in: Food Chemistry (https://doi.org/10.1016/j.foodchem.2024.142547)
All protocols are described (methods section) and all results are discussed.
DOI: 10.6084/m9.figshare.c.3867811_d6.v1
title: Additional file 6: Table S2. of Large-scale deployment of a rice 6Â K SNP array for genetics and breeding applications

description: Information on the 6,000 SNPs used for the C6AIR design (CSV 1977 kb)
DOI: 10.6084/m9.figshare.c.3867814_d2
title: Additional file 2: of A subset of conserved mammalian long non-coding RNAs are fossils of ancestral protein-coding genes

description: Table S1. GLCPs in each of the six reference species. (XLSX 104 kb)
DOI: 10.17632/mkfyw445sk.1
title: Soil respiration and soil Physicochemical properties

description: Changes in the natural elevation gradient of forests lead to significant differences in environmental factors such as temperature and humidity, creating a robust framework for modeling and predicting the effects of future environmental shifts on soil respiration dynamics and the associated feedback mechanisms within forest ecosystems. As a critical component of the carbon (C) cycle, soil respiration is highly sensitive to variations in environmental factors and plays a key role in the feedback mechanisms that respond to these changes. Despite the importance of soil respiration in subtropical montane systems, the variation patterns and driving factors of its components across different elevations remain unclear. Specifically, our analysis of the significance of environmental factors affecting soil respiration components will enhance the design and interpretation of studies related to forest C dynamics in the context of global change, both in applied research and foundational studies.
Our study investigated the impact of elevation gradients on soil respiration in Pinus taiwanensis forests, a species restored in subtropical montane forests in China, and examined how each respiratory component responds to elevation-induced changes in soil environmental factors, including soil physicochemical properties and enzyme activities. Our findings revealed that the soil respiration components in Pinus taiwanensis forests displayed substantial temporal and spatial variability, primarily influenced by moisture and temperature. Moreover, moisture and temperature, along with other environmental factors, played a significant role in driving the spatial variability of soil respiration.
DOI: 10.6084/m9.figshare.c.3867811_d6
title: Additional file 6: Table S2. of Large-scale deployment of a rice 6Â K SNP array for genetics and breeding applications

description: Information on the 6,000 SNPs used for the C6AIR design (CSV 1977 kb)
DOI: 10.6084/m9.figshare.c.3867814_d3.v1
title: Additional file 3: of A subset of conserved mammalian long non-coding RNAs are fossils of ancestral protein-coding genes

description: Table S2. Coordinates of the conserved lncRNAs from human and mouse considered in this study (in BED format). (XLSX 1079 kb)
DOI: 10.6084/m9.figshare.c.3867814_d3
title: Additional file 3: of A subset of conserved mammalian long non-coding RNAs are fossils of ancestral protein-coding genes

description: Table S2. Coordinates of the conserved lncRNAs from human and mouse considered in this study (in BED format). (XLSX 1079 kb)
DOI: 10.6084/m9.figshare.c.3867814_d4.v1
title: Additional file 4: of A subset of conserved mammalian long non-coding RNAs are fossils of ancestral protein-coding genes

description: Table S4. Positionally conserved GLCPâ  lncRNA and GLCPâ  pseudogene pairs. (XLSX 188 kb)
DOI: 10.6084/m9.figshare.c.3867814_d4
title: Additional file 4: of A subset of conserved mammalian long non-coding RNAs are fossils of ancestral protein-coding genes

description: Table S4. Positionally conserved GLCPâ  lncRNA and GLCPâ  pseudogene pairs. (XLSX 188 kb)
DOI: 10.15468/dl.qzcryc
title: Occurrence Download

description: A dataset containing 13026 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chelon labrosus (Risso, 1827)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 13026 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039330-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3867868_d2
title: Additional file 11: Table S6. of The transcription factor Maf-S regulates metabolic resistance to insecticides in the malaria vector Anopheles gambiae

description: Primer Tables. RNAi primers used in the synthesis of dsRNA, each with a T7 promoter region (shown in lower case) and sequences of primers used in all qPCR validation. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3867868_d4.v1
title: Additional file 2: Table S1. of The transcription factor Maf-S regulates metabolic resistance to insecticides in the malaria vector Anopheles gambiae

description: Information on microarray data sets from insecticide resistant populations. Population name represents the area from which the strain was sampled in addition to insecticide exposure, where relevant. Country of origin, species, susceptible reference strain and paper reference are also given. (XLSX 10Â kb)