cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.60s6033/1
title: fitness of control and selected populations on standard and high protein: carbohydrate diet

description: This data is from laboratory populations of D. melanogaster that have evolved tolerance to chronic larval malnutrition, in an experimental evolution set-up maintained for over 180 generations. The six evolved (selected) populations (S1-S6) and the corresponding six control populations (C1-C6) were raised as larvae on standard and high protein: carbohydrate (high P:C) diet. The emerging adult females were assayed for three traits: a) susceptibility to intestinal infection by Pseudomonas entomophila; b) ability to restore intestinal integrity upon infection (smurf phenotype); and c) body weight upon emergence. The excel file here presents the data from these assays.
DOI: 10.5061/dryad.6fd34vr.1
title: Data from: Alternative reproductive tactics and lifetime reproductive success in a polygynandrous mammal
DOI: 10.5061/dryad.6fd34vr.1/1.1
title: Data for ARTs and lifetime reproductive success in male CGS

description: Male Columbian ground squirrels (Urocitellus columbianus) data collected in the field located in Kananaskis Country, Alberta, Canada. Two separate data sets were used for the different analyses. Data for the direct comparison between satellite and territorial males is in the tab labeled "Direct_Comparison". The data for the lifetime reproductive success analysis is in the tab labeled "Lifetime_Reproductive_Success".
DOI: 10.5061/dryad.6fd34vr.2
title: Data from: Alternative reproductive tactics and lifetime reproductive success in a polygynandrous mammal
DOI: 10.5061/dryad.6fd34vr.2/1.2
title: Data for ARTs and lifetime reproductive success in male CGS

description: Male Columbian ground squirrels (Urocitellus columbianus) data collected in the field located in Kananaskis Country, Alberta, Canada. Two separate data sets were used for the different analyses. Data for the direct comparison between satellite and territorial males is in the tab labeled "Direct_Comparison". The data for the lifetime reproductive success analysis is in the tab labeled "Lifetime_Reproductive_Success".
DOI: 10.5061/dryad.8hq6qv2/1
title: Filtered Genepop file

description: Genepop file containing 8,075 filtered SNPs among all five morphs
DOI: 10.5061/dryad.8j28r94/1
title: R code for theoretical models

description: R code to simulate the three stochastic ecological models described in the associated paper. Contact Jeremy Fox (jefox@ucalgary.ca) with questions.
DOI: 10.5061/dryad.8j28r94/2
title: empirical results summary

description: Comma-delimited text file summarizing the empirical results. Each row gives data for one site. Variables are Lake.ID (unique identifier for each site), cov.NFD.freq (covariance between log-transformed strength of negative frequency dependence and log-transformed mean frequency), richness (the number of species included in the analysis), and gini (the Gini coefficient, a measure of the evenness of species' frequencies). Contact Jeremy Fox with questions (jefox@ucalgary.ca).
DOI: 10.5061/dryad.94jn4t9/12
title: CFD model a2 PART4/7
DOI: 10.5061/dryad.94jn4t9/13
title: CFD model a2 PART5/7
DOI: 10.5061/dryad.94jn4t9/14
title: CFD model a2 PART6/7
DOI: 10.5061/dryad.94jn4t9/15
title: CFD model a2 PART7/7
DOI: 10.5061/dryad.94jn4t9/16
title: CFD models c1 and c2 PART1/5

description: Ansys 19.0 Workbench project file that contains the model and data for the simulation described in the article as "model c1" and "model c2". Raw data files can be found under /dp0/FFF-2/Fluent, /dp0/FFF-3/Fluent. Zip file, 4.09 GB.
DOI: 10.5061/dryad.94jn4t9/17
title: CFD models c1 and c2 PART2/5
DOI: 10.5061/dryad.94jn4t9/18
title: CFD models c1 and c2 PART3/5
DOI: 10.5061/dryad.94jn4t9/19
title: CFD models c1 and c2 PART4/5
DOI: 10.5061/dryad.94jn4t9/20
title: CFD models c1 and c2 PART5/5
DOI: 10.5061/dryad.95fs76f/2
title: Foci Detection and Colocalization 1052 Software.

description: Foci Detection and Colocalization Software. The Image and Data Analysis Core (IDAC) at Harvard Medical School developed a custom MATLAB based software for nuclear foci and colocalization detection in microscopy images based upon their previously described nuclear foci detection software. In brief, unaltered images are analyzed by the software to detect signal intensity over a set threshold to isolate foci from background. The software then uses DAPI staining to generate a mask that defines nuclear areas in the image. Only foci above the fluorescence threshold and within the nuclear masks are scored. The software determines colocalization based on the distance between the centers of nuclear foci in a reference channel to foci in other channels of the image.
DOI: 10.5061/dryad.982dd1k/1
title: Becker et al 2018_Salmonella prevalence

description: Salmonella prevalence in white ibis (fecal samples) and the environment (soil and water samples), mean ibis flock size, and the 95% confidence intervals per each study timepoint.
DOI: 10.5061/dryad.982dd1k/2
title: Becker et al 2018 ibis code

description: R code to perform all simulation and sensitivity analyses
DOI: 10.5061/dryad.9g0k0t0/1
title: Fastq files

description: Fastq files performed on the 16S rRNAV3-V4 regions.
DOI: 10.5061/dryad.9p1tc81/2
title: Anticlea flower data

description: The Excel spreadsheet includes 4 worksheets (each accompanied by legend worksheets) that present flower-level data for different aspects of reproduction.  The "floral traits" worksheet includes variables identifying flower position, type and size and ovule number.  The "pollen production" worksheet presents pollen counts for a sampled subset of flowers.  The "pollen receipt" worksheet presents pollen receipt for a sampled subset of flowers. The "fruits & seeds" worksheet identifies whether individual flowers produced a fruit and, if so, how many seeds it contained.
DOI: 10.5061/dryad.b23d7k8/3
title: Movie S1

description: SMNS 17755a: CT scan, dorsal-ventral
DOI: 10.5061/dryad.b23d7k8/4
title: Movie S2

description: SMNS 17755a: CT scan, lateral-medial
DOI: 10.5061/dryad.b23d7k8/5
title: Movie S3

description: SMNS 17755a: CT scan, anterior-posterior
DOI: 10.5061/dryad.b23d7k8/6
title: Movie S4

description: ZPAL V.39/22: CT scan, ventral-dorsal
DOI: 10.5061/dryad.b23d7k8/7
title: Movie S5

description: ZPAL V.39/22: CT scan, medial-lateral
DOI: 10.5061/dryad.cr1496b/1
title: 191Y_arctos_Slovenia_haploidised_fasta

description: Haploidised fasta sequence generated by mapping Illumina short reads to the reference genome assembly of the giant panda, then randomly selecting a single high quality nucleotide from the read stack for each position of the reference genome. See the original publication for full details. The raw sequencing data is also available from the European Nucleotide Archive. Note that this file will contain abundant errors in comparison to a consensus base call from high coverage data.
DOI: 10.5061/dryad.cr1496b/2
title: 235_arctos_Russia_haploidised_fasta

description: Haploidised fasta sequence generated by mapping Illumina short reads to the reference genome assembly of the giant panda, then randomly selecting a single high quality nucleotide from the read stack for each position of the reference genome. See the original publication for full details. The raw sequencing data is also available from the European Nucleotide Archive. Note that this file will contain abundant errors in comparison to a consensus base call from high coverage data.
DOI: 10.5061/dryad.cr1496b/3
title: Adm1_arctos_Admiralty_haploidised_fasta

description: Haploidised fasta sequence generated by mapping Illumina short reads to the reference genome assembly of the giant panda, then randomly selecting a single high quality nucleotide from the read stack for each position of the reference genome. See the original publication for full details. The raw sequencing data is also available from the European Nucleotide Archive. Note that this file will contain abundant errors in comparison to a consensus base call from high coverage data.
DOI: 10.5061/dryad.cr1496b/4
title: Den_arctos_Denali_haploidised_fasta

description: Haploidised fasta sequence generated by mapping Illumina short reads to the reference genome assembly of the giant panda, then randomly selecting a single high quality nucleotide from the read stack for each position of the reference genome. See the original publication for full details. The raw sequencing data is also available from the European Nucleotide Archive. Note that this file will contain abundant errors in comparison to a consensus base call from high coverage data.
DOI: 10.5061/dryad.cr1496b/5
title: E-VD-1838_spelaeus_Spain_haploidised_fasta

description: Haploidised fasta sequence generated by mapping Illumina short reads to the reference genome assembly of the giant panda, then randomly selecting a single high quality nucleotide from the read stack for each position of the reference genome. See the original publication for full details. The raw sequencing data is also available from the European Nucleotide Archive. Note that this file will contain abundant errors in comparison to a consensus base call from high coverage data.
DOI: 10.5061/dryad.cr1496b/6
title: Ge_arctos_Georgia_haploidised_fasta

description: Haploidised fasta sequence generated by mapping Illumina short reads to the reference genome assembly of the giant panda, then randomly selecting a single high quality nucleotide from the read stack for each position of the reference genome. See the original publication for full details. The raw sequencing data is also available from the European Nucleotide Archive. Note that this file will contain abundant errors in comparison to a consensus base call from high coverage data.
DOI: 10.5061/dryad.cr1496b/7
title: GS136_ingressus_Austria_haploidised_fasta

description: Haploidised fasta sequence generated by mapping Illumina short reads to the reference genome assembly of the giant panda, then randomly selecting a single high quality nucleotide from the read stack for each position of the reference genome. See the original publication for full details. The raw sequencing data is also available from the European Nucleotide Archive. Note that this file will contain abundant errors in comparison to a consensus base call from high coverage data.
DOI: 10.5061/dryad.cr1496b/8
title: HV74_kudarensis_Armenia_haploidised_fasta

description: Haploidised fasta sequence generated by mapping Illumina short reads to the reference genome assembly of the giant panda, then randomly selecting a single high quality nucleotide from the read stack for each position of the reference genome. See the original publication for full details. The raw sequencing data is also available from the European Nucleotide Archive. Note that this file will contain abundant errors in comparison to a consensus base call from high coverage data.
DOI: 10.5061/dryad.cr1496b/9
title: LS039_arctos_Spain_haploidised_fasta

description: Haploidised fasta sequence generated by mapping Illumina short reads to the reference genome assembly of the giant panda, then randomly selecting a single high quality nucleotide from the read stack for each position of the reference genome. See the original publication for full details. The raw sequencing data is also available from the European Nucleotide Archive. Note that this file will contain abundant errors in comparison to a consensus base call from high coverage data.
DOI: 10.5061/dryad.ff265/1
title: Sampling information; microsatellite and SNP genotypes

description: First sheet includes the following information on the sampling: sample name, collection year, country and region of origin, as well as sample type. Second, third and fourth sheets include the microsatellite and SNP databases, respectively, used in the present study.
DOI: 10.5061/dryad.gm18v5f/1
title: Supplementary Figures S1-S10 Notes S1-S9 Tables S1-S7

description: Fig. S1. Plastic round pipes screened in HCR system.
Fig. S2. Experimental design.
Fig. S3. Experimental conditions.
Fig. S4. Control flow of image acquisition.
Fig. S5. Workflow chart of operation HCR.
Fig. S6. Sequence diagram of micro-CT-RGB phenotyping system.
Fig. S7. Diagram of image processing and feature extraction.
Fig. S8. Dynamic growth curve of rice phenotypic traits.
Fig. S9. Modeling results of grain yield using different number of traits.
Fig. S10. Workflow chart of database.
Note S1. The source code of sonogram extraction.
Note S2. The source code of computed tomography reconstruction.
Note S3. The source code of tiller extraction.
Note S4. The source code of tiller rotation.
Note S5. The source code of tiller diameter extraction.
Note S6. The source code of tiller angle extraction.
Note S7. The source code of fill holes.
Note S8. The source code of tiller area traits extraction.
Note S9. Definition of the traits.
Table S1. Main specifications of micro-CT-RGB inspection unit.
Table S2. Manual measurements of 8 plastic pipes with 2 workers.
Table S3. Automatic measurements of 8 plastic pipes with 10 replications.
Table S4. Comparison of rice with automated measurements and manual measurements.
Table S5. The Comparison of actual TTA/TPA and predicated TTA/TPA with 6 models.
Table S6. The statistical analysis results of one-way ANOVA using SPSS software.
Table S7. The statistical analysis results of t-test using SPSS spftware.
DOI: 10.5061/dryad.gm18v5f/2
title: Phenotypic traits

description: Rice accession information and phenotypic traits (RGB, CT, and manual traits) used in this work.
DOI: 10.5061/dryad.mf7hk2q/1
title: Supplementary Table e-1

description: PDF
DOI: 10.5061/dryad.n08qs2s/1
title: Supp. Data 1

description: This spreadsheet provides the raw data used in the article, specifically relating to seagrass cover, cover change, carbon loss, and mapping accuracies. All numbers were calculated in ArcGIS 10.5.
DOI: 10.5061/dryad.n08qs2s/2
title: Supp. Data 2

description: Field points associated with the ground-truthing survey conducted in 2017. All points are recorded in latitude and longitude, and projected in WGS1984. The seagrass column represents presence (1) or absence (0).
DOI: 10.5061/dryad.n08qs2s/3
title: Supp. Data 3

description: Polygons shapefiles of the four seagrass maps; 1986 (LT5), 2000 (LE7), 2016 (LC8), and 2016 (S2A), provided in zipped file. Each shapefile is projected onto WGS184 UTM Zone 37S.
DOI: 10.5061/dryad.n08qs2s/7
title: Supplementary Information

description: This document provides information relating to the aforementioned manuscript. It contains information related to the accompanying data files and is provided to ensure the results are reproducible.
DOI: 10.5061/dryad.nr0kj16/1
title: VBM Appendix 9.27.18
DOI: 10.5061/dryad.pq37vn6/4
title: Household yearly crop production in kg

description: Household yearly crop production in kg
DOI: 10.5061/dryad.pq37vn6/5
title: Distance and visits to markets

description: Distance and visits to markets
DOI: 10.5061/dryad.pq37vn6/6
title: General diet related information of index child

description: General diet related information of index child
DOI: 10.5061/dryad.pq37vn6/7
title: Children's 24hour recall dietary intake data and calculated IDDS

description: Children's 24hour recall dietary intake data and calculated IDDS
DOI: 10.5061/dryad.pq37vn6/8
title: Anthropometry data

description: Anthropometry data (no more than 3 indirect indentifiers per subject are allowed to publish, sex is not included, if this data is needed please contact corresponding author)
DOI: 10.5061/dryad.tk5ts47/4
title: Telemetry data file for the individual recorded
DOI: 10.5061/dryad.tk5ts47/5
title: Telemetry data file for the individual recorded
DOI: 10.17632/2tktr6hb83.1
title: Data for: Overview and features of larval developmental sites of biting midges species associated with livestock in Israel with implications to their control

description: Overview and features of larval developmental sites of biting midges species associated with livestock in Israel with implications to their control The main finding of the article:
DOI: 10.17632/69hn2rmtp9.1
title: Data for: The role of insulin-like growth factor 1 in ALS cell and mouse models: a mitochondrial protector

description: all the experiments were repeated at least 3 times.
DOI: 10.17632/jsfsvv8jw7.1
title: Data for: Insights into the tectonic history of the Western Alps through dating of fissure monazite in the Mont Blanc and Aiguilles Rouges massifs

description: Treated ion probe (SIMS) hydrothermal monazite age data from the Mont Blanc - Aiguilles Rouges area and supplementary images.
DOI: 10.5061/dryad.2jc05rt/1
title: Flightpaths of Predators Intercepting Dummy Targets

description: Flightpaths in XYZ coordinates for killer flies (Coenosia attenuata) and a robber fly (Holcocephala fusca) intercepting dummy targets. Targets traveled either in a linear or erratic fashion. Folders of flightpaths are named both for the fly species that is intercepting the target and the style of target travel (linear or erratic).
DOI: 10.5061/dryad.2tn1rf9/1
title: Seedling emergence

description: Seedling emergence in experimental stations set up in three habitats (Under Pouteria, open interspaces, and dry riverbeds) during 2015 and 2016
DOI: 10.5061/dryad.3jt6kh3/1
title: Stem location, identity and dbh data
DOI: 10.5061/dryad.4cn693k/1
title: Data For "Sex differences in dispersal syndrome are modulated by environment and evolution"

description: This data file contains data from three separate experiments. In each experiment, three traits (Body size, Desiccation resistance and Exploratory Tendency) were measured. The .xlsx file uploaded has three sheets, each containing data from all the three experiments for a given trait.
DOI: 10.5061/dryad.5pp17kd/1
title: Supplementary Figure e-1. Test day and exercise protocol

description: The participant arrived at the laboratory at ~13:00 following a 4 hr fast, having abstained from smoking, alcohol, and caffeine for the preceding 16 hrs. Routine bowel management was completed &gt;24 hrs prior to each trial. Upon arrival, the participant emptied his bladder and confirmed compliance with these pre-exercise requirements. The participant was fitted with surface electrodes to record EMG (Bagnoli; Delsys Inc) signals across multiple muscles, a 12 lead ECG (Cardio-card; Nasiff Associates Inc) and heart rate monitor (T1; Polar) prior to testing (A). We took three resting brachial blood pressure (BP) measurements (Dinamap Pro 300V2; General Electric) before an un-blinded clinician adjusted the neurostimulator (B, C), as per the trial allocation, while investigators left the room. We attached a facemask to an online metabolic cart (TrueOne 2400®; ParvoMedics) to capture breath-by-breath variables. Following a 5 min rest, whereby BP measurements were recorded every minute (D), the participant performed a two-minute warm-up with no resistance (0W) on an arm-crank ergometer (Angio; Lode). We increased power output by 10W/minute, until the participant reached volitional exhaustion (E). The participant cycled at 50 revolutions per minute (rpm) throughout. During every minute of the test we recorded the participants global rating of perceived exertion (RPE) using a (Borg 6 -20) RPE scale. We defined peak oxygen uptake (V̇O2peak) and ventilation as the highest 15-breath rolling averages recorded during exercise. A schematic of the trial day is shown in panel (F).
DOI: 10.5061/dryad.6c31bf2/1
title: 2016_Coho_Jacks_rubias

description: This is multi-locus genotype data for the coho Jacks. These were sampled as returned to Hatchery
DOI: 10.5061/dryad.6c31bf2/2
title: 2016-17_Coho_Fishery_Samples_rubias

description: This is multi-locus genotype data for the coho Jacks. These were samples taken from fishery.
DOI: 10.5061/dryad.6c31bf2/3
title: 2017_Coho_Escapement_rubias

description: This is multi-locus genotype data for the coho escapements. These were sampled as returned to Hatchery
DOI: 10.5061/dryad.6gn844r/1
title: Physical Activity Knowledge in Australian Adults
DOI: 10.5061/dryad.8hq6qv2/2
title: Neutral Genepop file

description: Genepop file containing 5,976 neutral SNPs among five morphs, as determined by BAYESCAN and LOSITAN
DOI: 10.5061/dryad.8hq6qv2/3
title: Adaptive Genepop file

description: Genepop file containing 17 putative adaptive SNPs among five morphs, as determined by BAYESCAN and LOSITAN
DOI: 10.5061/dryad.8hq6qv2/4
title: Fig_S1

description: HDplot (McKinney et al. 2016) illustrating the criteria used for identifying loci as putative paralogs (red points).  Paralogs were categorized based upon a high proportion of heterozygotes and/or high read depth ratios. Loci retained for downstream analyses are colored black.
DOI: 10.5061/dryad.8hq6qv2/5
title: Fig_S2

description: Identifying the optimal number of clusters for the neutral dataset. BIC scores calculated following k-means clustering (a) and associated error for cross validation of ADMIXTURE values (b) for k (1 – 10).
DOI: 10.5061/dryad.8hq6qv2/6
title: Fig_S3

description: Allele frequencies among all five morphs for the 17 putative adaptive loci identified by both BAYESCAN and LOSITAN
DOI: 10.5061/dryad.8hq6qv2/7
title: Fig_S4

description: Pairwise comparison at neutral and adaptive loci (95% confidence intervals) for all five morphs, colored by sympatric (grey) and allopatric (black) pairs.
DOI: 10.5061/dryad.8hq6qv2/8
title: Table_S1

description: Locus-specific summary statistics for the filtered dataset (8,075 loci), calculated within each Arctic charr morph.
DOI: 10.5061/dryad.8hq6qv2/9
title: Table_S2

description: BAYESCAN and LOSITAN output used for partitioning the filtered dataset into neutral and putative adaptive loci.
DOI: 10.5061/dryad.b23d7k8/11
title: Movie S7

description: ZPAL V.39/22: Volumetric render
DOI: 10.5061/dryad.b23d7k8/12
title: Model S1

description: ZPAL V.39/22: 3D render
DOI: 10.5061/dryad.b23d7k8/13
title: Model S2

description: ZPAL V.39/22: 3D model (PDF)
DOI: 10.5061/dryad.b23d7k8/14
title: Matrix

description: Updated matrix for phylogenetic analyses
DOI: 10.5061/dryad.b23d7k8/15
title: Matrix

description: Updated matrix for phylogenetic analyses
DOI: 10.5061/dryad.b23d7k8/16
title: Szczygielski & Sulej - supplement

description: Material descriptions, tables, extended discussion, supplementary figures, character list, character matrix, phylogenetic trees, lists of synapomorphies, and references
DOI: 10.5061/dryad.b23d7k8/17
title: Szczygielski & Sulej - supplement

description: Material descriptions, tables, extended discussion, supplementary figures, character list, character matrix, phylogenetic trees, lists of synapomorphies, and references
DOI: 10.5061/dryad.b23d7k8/8
title: Movie S6

description: ZPAL V.39/22: CT scan, anterior-posterior
DOI: 10.5061/dryad.b701bs0/1
title: Field Data

description: field data comprised of lizard habitat, thermal, and morphological information
DOI: 10.5061/dryad.b701bs0/2
title: achromatic and chromatic contrasts

description: achromatic and chromatic contrasts between lizard dorsal surface and selected microhabitat
DOI: 10.5061/dryad.cr1496b/10
title: NB_maritimus_haploidised_fasta

description: Haploidised fasta sequence generated by mapping Illumina short reads to the reference genome assembly of the giant panda, then randomly selecting a single high quality nucleotide from the read stack for each position of the reference genome. See the original publication for full details. The raw sequencing data is also available from the European Nucleotide Archive. Note that this file will contain abundant errors in comparison to a consensus base call from high coverage data.
DOI: 10.5061/dryad.cr1496b/11
title: SB_maritimus_haploidised_fasta

description: Haploidised fasta sequence generated by mapping Illumina short reads to the reference genome assembly of the giant panda, then randomly selecting a single high quality nucleotide from the read stack for each position of the reference genome. See the original publication for full details. The raw sequencing data is also available from the European Nucleotide Archive. Note that this file will contain abundant errors in comparison to a consensus base call from high coverage data.