cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.x69p8czn8
title: Instituto Nacional de Investigación Agropecuaria (INIA) Rice Breeding Program Historical Dataset

description: Breeding programs generate vast amounts of data which are often scattered
 in separate files. This hinders the application of modern breeding tools
 such as multi-environment analyses and genomic selection. This dataset is
 the result of consolidating 23 years of phenotypic, pedigree, and genomic
 records from the Uruguayan national rice breeding program. All the
 available data from 1997 to 2020 corresponding to field trials, blast
 nurseries, laboratory analyses of milling and cooking quality, pedigree
 information, and genomic information for selected advanced breeding lines
 are gathered. Records of 996 trials in 12 locations over a span of 23
 years, 91,636 field plots with information on 14 phenotypic variables,
 pedigree for 19,447 genotypes, and genomic information regarding 61,260
 SNP markers for 965 genotypes were recovered. The dataset is structured in
 Trials, Phenotypes, Lines, Genomic Information, and SNP Tables. Genotype
 identification has been coded.
description: A detailed description on data collection and processing is
 available in the corresponding manuscript submitted to Crop Science
 journal. Briefly, for data unification a uniform format spreadsheet was
 designed with standardized names for fields, creating one spreadsheet per
 trial. An R code was created and used to merge trial's data into a
 single table. All tables were then unified into one with all the available
 IRBP information. A relational database structure was defined by
 identifying the elements that constituted the system and the key fields
 that connected them. Variable names and levels of all categorical
 variables were standardized. 
description: Data files are in txt format.
DOI: 10.5061/dryad.rn8pk0pfk
title: Microbial community dynamics during decomposition of insect exuviae and frass in soil

description: As the mass-rearing industry of insects for food and feed is expected to
 grow, residual streams associated with this activity will become
 increasingly available. Before these residues can be used as organic
 amendments, more knowledge on the decomposition and dynamics of the
 involved microbial communities is needed. This study investigated
 decomposition, N-mineralization, and fungal/bacterial community
 composition during 16 weeks of incubation of exuviae and frass of black
 soldier fly, mealworm, and house cricket in arable soil. Decomposition of
 insect residues in litterbags was rapid, with more than 50% weight loss in
 2 weeks. Accumulation of mineral-N from insect materials distributed in
 the soil was also highest during the first 2 weeks, but it was more
 profound for exuviae than their frass counterparts. Soil amendment with
 insect residues enriched soil microbial inhabitants belonging to
 Gammaproteobacteria, Bacilli, Actinobacteria, and Mortierellomycetes.
 Comparison of microbial community composition in soil amended with
 sterilized and nonsterilized mealworm exuviae indicated that the presence
 of microbial propagules in the exuviae had no significant influence on the
 composition of bacterial decomposers and a minor, but significant impact
 on fungal community composition. Overall, our results reveal a good
 prospect of using insect residual streams as soil amendment.
description: The data was collected from a 16-week pot experiment in a
 controlled environment, where exuviae and frass were amended into soil at
 1% (w/w). The dataset includes N-mineralization, ergosterol, pH, and qPCR
 measurements obtained during the study. The data provided in this database
 is raw/unprocessed.
DOI: 10.5061/dryad.k6djh9w9r
title: Resistance of termite mounds to variation in long-term fire regimes across semi-arid African savannas

description: 1. Fire regimes are expected to change with climate change, resulting in a
 crucial need to understand the specific ways in which variable fire
 regimes impact important contributors to ecosystem functioning, such as
 mound-building termites. Termite mounds and fire are both important agents
 of savanna ecosystem heterogeneity and functioning, but there is little
 understanding of how they interact across savanna types. 2. We used very
 high-resolution LiDAR remote sensing to measure the size, density, and
 distribution of termite mounds across approximately 1,300 ha of
 experimental burn plots in four South African savanna landscapes
 representing a wide range of fire treatments differing in seasonality and
 frequency of burning. 3. In nutrient-poor granitic savannas, fire had no
 impact on termite mound size, densities, and spatial distributions. In
 nutrient-rich basaltic savannas with high mammalian herbivore abundance
 and intermediate rainfall, very frequent fires caused a decrease in
 termite mound size, whereas in arid nutrient-rich basaltic savannas, fires
 that occurred at intermediate frequencies and in transitional seasons
 (i.e., late dry season and late wet season) decreased the degree of
 spatial overdispersal exhibited by mounds. 4. Overall, our results suggest
 that termite mounds are resistant to variation in fire seasonality and
 frequency, likely indicating that ecosystem services provided by
 mound-building termites will be unaffected by changing fire regimes.
 However, consideration of changes to termite mound size and distribution
 could be necessary for land managers in specific savanna types, such as
 nutrient-rich soils with high mammalian herbivore abundance.
description: The dataset consists of shape files of termite mounds and
 experimental burn plots manually deliniated from drone-based LiDAR and RGB
 remote sensing data at 10cm resolution. The plot level data is also
 provided in a csv document format.
description: Any GIS software, open source or proporietary.
DOI: 10.5061/dryad.ht76hdrkf
title: Data for: Single-blind determination of methane detection limits and quantification accuracy using aircraft-based LiDAR

description: Methane detection limits, emission rate quantification accuracy, and
 potential cross-species interference are assessed for Bridger Photonics’
 Gas Mapping LiDAR (GML) system utilizing data collected during laboratory
 testing and single-blind controlled release testing. Laboratory testing
 identified no significant interference in the path-integrated methane
 measurement from the gas species tested (ethylene, ethane, propane,
 n-butane, i-butane, and carbon dioxide). The controlled release study,
 comprised of 650 individual measurement passes, represents the largest
 dataset collected to date to characterize GML with respect to point-source
 emissions. Binomial regression is utilized to create detection curves
 illustrating the likelihood of detecting an emission of a given size under
 different wind conditions and for different flight altitudes.
 Wind-normalized methane detection limits (90% detection rate) of 0.25
 (kg/h)/(m/s) and 0.41 (kg/h)/(m/s) are observed at a flight 
 altitude of 500 feet and 675 feet above ground level, respectively.
 Quantification accuracy is also assessed for emissions ranging from 0.15
 to 1400 kg/h. When emission rate estimates were generated using wind from
 High-Resolution Rapid Refresh (HRRR) model (the primary wind source that
 Bridger uses for their commercial operations), linear regression indicates
 bias of 8.1% (R2 = 0.89). For 95% of controlled releases above Bridger’s
 stated production-sector detection sensitivity (3 kg/h with 90%
 probability of detection), accuracy of individual emission rate estimates
 produced using HRRR wind ranged from -64.1% to 87.0%. Across all
 controlled releases 38.1% of estimates had error within +/- 20%, and 87.3%
 of measurements were within a factor of two (-50% to +100% error). At low
 wind speed (less than 2 m/s) and low emission rates (less than 3 kg/h)
 emission estimates are biased high; however, when removed do not impact
 the regression significantly. The aggregate quantification error including
 all detected emission events was +8.2% using the HRRR wind source. The
 resulting detection curves and quantification accuracy illustrate
 important implications which must be considered when using measurements
 from GML or other remote emission measurement techniques to inform or
 validate inventory models, or to audit reported emission levels from oil
 and gas systems.
DOI: 10.5061/dryad.f7m0cfz0r
title: Pliotomodon and Deperetomys from North America

description: In this study we appraised the dental morphology and potential origin of
 two Neogene cricetodontine-like muroids, Pliotomodon
 primitivus from sediments in northern California and an
 undescribed muroid from central Oregon. Dental features
 of Pliotomodon are similar to those of Eurasian genera
 such
 as Byzantinia, Hispanomys and Ruscinomys, but the unusual morphology of M3/m3, with continuous enamel connections across their lingual surfaces closing the hypoflexus and posteroflexid, respectively, plus retention of only three roots on M1, suggests Pliotomodon arose from an ancestor distinct from the one that gave rise to the large late Neogene hypsodont cricetodontines of the Old World. Another archaic cricetodontine-like rodent, from the Warm Springs region of the John Day Formation in Oregon, is named as a new species of Deperetomys, D. dingusi, sp. nov. 
description: Supplementary file 1 (Supplementary Table 1) includes
 measurements and body mass data collected at museums to create equation 1
 in the text. Supplementary file 2 (Supplementary Table 2) is a
 chronologically ordered summary of measurements and body mass estimates
 for cricetodontine and cricetodontine-like Old and New World rodents taken
 from the literature and generated for this study.
 Supplementary data file 3 lists the characters and states for
 phylogenetic analysis using the TNT program of the Willi Hennig Society,
 determined through observation and coding of specimens. The characters and
 states are from López-Guerrero, P. 2014, Cricetodontini (Rodentia,
 Mammalia) del Mioceneo medio y superior del área de Daroca (Aragón,
 España): sistemática y filogenia. Supplementary data
 file 4 represents the character and state matrix used by TNT, and
 Supplementary data file 5 provides the single most parsimonious tree from
 the TNT analysis and lists of hypothesized terminal taxa apomorphies and
 node synapomorphies.
description: MS Word, MS Excel, Adobe Acrobat, TextEdit
DOI: 10.6078/d14d92
title: Data for: Thermal vulnerability in a mountain stream network: Temporal, spatial, and biological data

description: As climate change continues to increase air temperature in high-altitude
 ecosystems, it has become critical to understand the controls and scales
 of aquatic habitat vulnerability to warming. Here we used a nested array
 of high-frequency sensors, and advances in time-series models, to examine
 spatiotemporal variation in thermal vulnerability in a model Sierra Nevada
 watershed. Stream thermal sensitivity to atmospheric warming fluctuated
 strongly over the year and peaked in spring and summer—when hot days
 threaten invertebrate communities most. The reach scale (~50 m) best
 captured variation in summer thermal regimes. Elevation, discharge, and
 conductivity were important correlates of summer water temperature across
 reaches, but upstream water temperature was the paramount
 driver—supporting that cascading warming occurs downstream in the network.
 Finally, we used our estimated summer thermal sensitivity and downscaled
 projections of summer air temperature to forecast end-of-the-century
 stream warming, when extreme drought years like 2020-2021 become the norm.
 We found that 25.5% of cold-water habitat may be lost under
 business-as-usual RCP 8.5 (or 7.9% under mitigated RCP 4.5). This
 estimated reduction suggests that 27.2% of stream macroinvertebrate
 biodiversity (11.9% under the mitigated scenario) will be stressed or
 threatened in what was previously cold‑water habitat. Our quantitative
 approach is transferrable to other watersheds with spatially‑replicated
 time series and illustrates the importance of considering variation in the
 vulnerability of mountain streams to warming over both space and time.
 This approach may inform watershed conservation efforts by helping
 identify, and potentially mitigate, sites and time windows of peak
 vulnerability.
description: Please see the README.md
 document.
description: Please see the README.md
 document.
DOI: 10.5068/d1q38n
title: Data from: Total synthesis of lissodendoric acid A via stereospecific trapping of a strained cyclic allene

description: This data set includes FID files for NMR spectra obtained during the
 course of our study of the total synthesis of lissodendoric acid A.
 Lissodendoric acid A is manzamine alkaloid, with a complex structure. Our
 concise total synthesis hinges on the development of a regioselective,
 diastereoselective, and stereospecific trapping of a fleeting cyclic
 allene intermediate. This key step swiftly assembles the azadecalin
 framework of the natural product, allows for a succinct synthetic endgame,
 and enables a 12-step total synthesis. These studies demonstrate that
 strained cyclic allenes are versatile building blocks in chemical
 synthesis. The data set includes both proton and carbon NMR FID files for
 all synthetic intermediates. The files may be reused.
description: The FID files can be opened using Bruker's TopSpin software
 (free for academic users).  Other free software can also be utilized to
 process FID files, such as VnmrJ, SpinWorks, NMRPipe, matNMR 3, or
 iNMR.
DOI: 10.5061/dryad.d2547d85p
title: Goryeocrinus pentagrammos n. gen. n. sp. (Rhodocrinitidae; Diplobathrida), the first record of camerate crinoid from the Middle Ordovician (Darriwilian) of South Korea (East Gondwana)

description: Goryeocrinus pentagrammos n. gen. n. sp. from the
 Jigunsan Formation of South Korea is described, which is the first
 diplobathrid record from Middle Ordovician (middle Darriwilian) of East
 Gondwana. Phylogenetic analyses suggest
 that G. pentagrammos is a member of the
 paraphyletic Rhodocrinitidae of the Diplobathrida and most closely related
 to Paradiabolocrinus from the Late Ordovician (Sandbian)
 of Laurentia. G. pentagrammos is characterized
 by having a pentameral, flat bowl-shaped calyx, conspicuous pentagrammatic
 ridge formed by bifurcated median ray ridge and pentagonal basal ridge, at
 least two interradials in the first row of regular interrays, and
 anitaxial ridge originating from CD interray but close to C ray radial,
 and lacking intrabrachials and interradials between secundibrachials. The
 occurrence of G. pentagrammos from South Korea (East
 Gondwana) drastically expands Ordovician paleogeographic range of the
 camerates which have otherwise been recorded from Laurentia, West
 Gondwana, Avalonia, and Baltica.
DOI: 10.5061/dryad.w9ghx3fsm
title: Carryover effects in a sea star: Juvenile resource availability does not compensate for a poor larval environment

description: Carryover effects are widespread in nature and can link early-life
 experiences to the regulation of populations. However, for organisms with
 complex life cycles, it is unclear whether offspring can overcome negative
 early-life experiences when provided with abundant post-metamorphic
 resources. We tested this by rearing larvae of the keystone sea
 star Asterias forbesi, under high or low food conditions, and
 then reared the juveniles for 2–3 weeks under one of four food treatments.
 Larvae reared under low food conditions took longer to reach metamorphosis
 and settled as smaller juveniles with fewer spines. For early settlers
 (mean age at settlement = 24.0 d), carryover effects of low larval food
 significantly reduced post-metamorphic size, mussel consumption and
 growth. However for late settlers (mean age at settlement = 29.3 d), there
 were no carryover effects of larval food availability detected
 post-metamorphosis. The differences between early and late settlers may
 indicate a trade-off between larval duration and the presence of carryover
 effects. Our data suggest that carryover effects mediated by body size at
 settlement could determine post-metamorphic survival, growth, and
 performance, ultimately impacting the recruitment of this keystone
 predator.
DOI: 10.5061/dryad.ffbg79czm
title: Tracking the path from learning to innate predator recognition in Lymnaea stagnalis

description: Organisms evolve adaptive strategies to adjust to the rapidly changing
 environmental stressors. Predation pressure is one of the strongest
 selective forces and organisms respond to predatory threats via innate and
 learned responses. We utilized a natural, experimental set-up, where two
 lakes –Stoney and Margo in Saskatchewan, Canada containing natural
 populations of the prey Lymnaea stagnalis differed in the presence and
 absence of an invasive, predatory Northern crayfish, Faxonius virilis. We
 exploited the contrast in the predation backgrounds of the snail
 populations from the two lakes to test, a) if predator-naïve snails learn
 to detect a novel invasive predator, b) predator recognition in
 predator-experienced snails is innate, and, c) if learning about a novel
 predator gets transmitted to the successive generations. We quantified
 predator fear memory formation using a higher-order learning paradigm
 called configural learning. We found that a) predator-naïve snails learned
 to recognize the novel predator even after a brief exposure to predator
 cues highlighting the role of learning in combating invasive predators, b)
 predator recognition in predator-experienced snails is innate, and, c) the
 learning and predator detection mechanisms is not transmitted to
 successive generations. The population variation observed in the
 predator-detection mechanism may be due to the activation and deactivation
 of a predatory template as a function of predator exposure in the
 environment. We find an interesting study system to address how fear
 learning occurs and the possible mechanism of the formation of innate fear
 recognition from a learned fear recognition.
DOI: 10.5061/dryad.msbcc2g2f
title: Data for: Variable food alters responses of larval crown-of-thorns starfish to ocean warming but not acidification

description: We examined whether warming, acidification, and different food
 availability regimes interacted to affect the survival, development, and
 growth of larval crown-of-thorns starfish, Acanthaster sp. (CoTS). Larvae
 were reared in all combinations of two temperatures (26, 30 °C), two pH
 levels (pH 8.0, 7.6), and three food regimes (‘low’ ration: 1,000 cells
 mL-1; ‘switch’ ration: 1,000 cells mL-1 until day 11, followed by 50,000
 cells mL-1; and ‘high’ ration: 50 000 cells mL-1). 
description: See Methods section of the related paper "Variable food
 alters responses of larval crown-of-thorns starfish to ocean warming but
 not acidification" <em>Communication Biology </em>for
 details. Mos, B., Mesic, N. & Dworjanyn, S.A.
 Variable food alters responses of larval crown-of-thorns starfish to ocean
 warming but not acidification. <em>Commun Biol</em>
 <strong>6</strong>, 639 (2023). https://doi.org/10.1038/s42003-023-05028-1
description: The data file is an Excel Worksheet (.xlsx) which can be accessed
 with Excel, Excel Viewer, Google Sheets or other spreadsheet
 programs.
DOI: 10.15468/dl.dm3g5y
title: Occurrence Download

description: A dataset containing 332 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mapping of subtidal Laminaria hyperborea and Saccorhiza polyschides in Northern Portugal"
 ]
}

 The dataset includes 332 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003322-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.rn8pk0pfm
title: Informing the design of urban green and blue spaces through an understanding of European's usage and preferences

description: In light of global climate change and the biodiversity crisis, making
 cities more resilient through an adjusted design of urban green and blue
 spaces is crucial. Nature-based solutions help address these challenges
 while providing opportunities for nature experiences, and providing
 cultural ecosystem services that support public health. The COVID-19
 pandemic and its associated stressors highlighted the interrelated
 socio-ecological services provided by nature-based solutions like urban
 green and blue spaces. This pan-European study therefore aimed to enhance
 the socio-ecological understanding of green and blue spaces to support
 their design and management. Using an online survey, green and blue space
 preferences, usage, and pandemic-related changes in greenspace visit and
 outdoor recreation frequencies were examined. Greenspace visit and outdoor
 recreation frequencies were associated with respondents’ (N=584 from 15
 countries) geographic location, dominant type of neighborhood greenspace,
 and greenspace availability during the pandemic, but not greenspace
 perceptions or sociodemographic background. Greenspace visit and outdoor
 recreation frequencies were generally high, however Southern Europeans
 reported lower greenspace visit and outdoor recreation frequencies both
 before and during the pandemic than Northern Europeans. Many Southern
 Europeans also reported having few neighborhood greenspaces and low
 greenspace availability during the pandemic. The most common outdoor
 recreational activity among respondents before the pandemic was walking or
 running with the most frequently stated purpose of time spent outdoors
 being restorative in nature (i.e. relaxing or calming down). Most
 Europeans had positive perceptions of green and blue spaces with
 preferences for structurally diverse and natural or unmanaged green
 elements. This highlights the importance of accessible green and blue
 spaces both in everyday life and during times of crisis. Stakeholders,
 their preferences, and regional and cultural differences should be
 included in the co-design of urban green and blue spaces to maximize their
 potential for both people and nature.
DOI: 10.15468/dl.nbuxfj
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Falcataria toona",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 221 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003323-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.