cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3334/cdiac/otg.aoml_bigelow_ecoast_2016
title: Partial pressure (or fugacity) of carbon dioxide, salinity and other variables collected from Surface underway observations using Carbon dioxide (CO2) gas analyzer, Shower head chamber equilibrator for autonomous carbon dioxide (CO2) measurement and other instruments from NOAA Ship HENRY B. BIGELOW in the North Atlantic Ocean and Stellwagen Bank National Marine Sanctuary from 2016-04-08 to 2016-11-21 (NCEI Accession 0157405)

description: This dataset includes Surface underway, chemical, meteorological and physical data collected from NOAA Ship HENRY B. BIGELOW in the North Atlantic Ocean and Stellwagen Bank National Marine Sanctuary from 2016-04-08 to 2016-11-21. These data include AIR-SEA DIFFERENCE - PARTIAL PRESSURE (OR FUGACITY) OF CARBON DIOXIDE, BAROMETRIC PRESSURE, Partial pressure (or fugacity) of carbon dioxide - atmosphere, Partial pressure (or fugacity) of carbon dioxide - water, SALINITY and SEA SURFACE TEMPERATURE. The instruments used to collect these data include Carbon dioxide (CO2) gas analyzer and Shower head chamber equilibrator for autonomous carbon dioxide (CO2) measurement.

These data were collected by Denis Pierrot, Kevin F. Sullivan, and Rik Wanninkhof of NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML) as part of the Bigelow_ECoast_33HH20160408, Bigelow_ECoast_33HH20160506, Bigelow_ECoast_33HH20160517, Bigelow_ECoast_33HH20160606, Bigelow_ECoast_33HH20160627, Bigelow_ECoast_33HH20160718, Bigelow_ECoast_33HH20160810, Bigelow_ECoast_33HH20160908, Bigelow_ECoast_33HH20160928, Bigelow_ECoast_33HH20161011, Bigelow_ECoast_33HH20161101 and Bigelow_ECoast_33HH20161116 dataset. CDIAC associated the following cruise ID(s) with this dataset: 33HH20160408, 33HH20160506, 33HH20160517, 33HH20160606, 33HH20160627, 33HH20160718, 33HH20160810, 33HH20160908, 33HH20160928, 33HH20161011, 33HH20161101 and 33HH20161116
DOI: 10.3334/cdiac/otg.aoml_bigelow_ecoast_2015
title: Partial pressure (or fugacity) of carbon dioxide, salinity and other variables collected from Surface underway observations using Carbon dioxide (CO2) gas analyzer, Shower head chamber equilibrator for autonomous carbon dioxide (CO2) measurement and other instruments from NOAA Ship HENRY B. BIGELOW in the North Atlantic Ocean and Stellwagen Bank National Marine Sanctuary from 2015-03-12 to 2015-11-17 (NCEI Accession 0157418)

description: This dataset includes Surface underway, chemical, meteorological and physical data collected from NOAA Ship HENRY B. BIGELOW in the North Atlantic Ocean and Stellwagen Bank National Marine Sanctuary from 2015-03-12 to 2015-11-17. These data include AIR-SEA DIFFERENCE - PARTIAL PRESSURE (OR FUGACITY) OF CARBON DIOXIDE, BAROMETRIC PRESSURE, Partial pressure (or fugacity) of carbon dioxide - atmosphere, Partial pressure (or fugacity) of carbon dioxide - water, SALINITY and SEA SURFACE TEMPERATURE. The instruments used to collect these data include Carbon dioxide (CO2) gas analyzer and Shower head chamber equilibrator for autonomous carbon dioxide (CO2) measurement.

These data were collected by Denis Pierrot, Kevin F. Sullivan, and Rik Wanninkhof of NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML) as part of the Bigelow_ECoast_33HH20150312, Bigelow_ECoast_33HH20150323, Bigelow_ECoast_33HH20150407, Bigelow_ECoast_33HH20150427, Bigelow_ECoast_33HH20150519, Bigelow_ECoast_33HH20150610, Bigelow_ECoast_33HH20150624, Bigelow_ECoast_33HH20150727, Bigelow_ECoast_33HH20150812, Bigelow_ECoast_33HH20150901, Bigelow_ECoast_33HH20150923, Bigelow_ECoast_33HH20151007, Bigelow_ECoast_33HH20151027 and Bigelow_ECoast_33HH20151112 dataset. CDIAC associated the following cruise ID(s) with this dataset: 33HH20150312, 33HH20150323, 33HH20150407, 33HH20150427, 33HH20150519, 33HH20150610, 33HH20150624, 33HH20150727, 33HH20150812, 33HH20150901, 33HH20150923, 33HH20151007, 33HH20151027 and 33HH20151112
DOI: 10.3334/cdiac/otg.coast_delware_316g20120202
title: Dissolved inorganic carbon, pH, alkalinity, temperature, salinity and other variables collected from discrete sample and profile observations using CTD, bottle and other instruments from NOAA Ship DELAWARE II in the North Atlantic Ocean and Stellwagen Bank National Marine Sanctuary from 2012-02-02 to 2012-02-19 (NCEI Accession 0157436)

description: This dataset includes chemical, discrete sample, physical and profile data collected from NOAA Ship DELAWARE II in the North Atlantic Ocean and Stellwagen Bank National Marine Sanctuary from 2012-02-02 to 2012-02-19. These data include AMMONIUM (NH4), DISSOLVED INORGANIC CARBON (DIC), DISSOLVED OXYGEN, HYDROSTATIC PRESSURE, NITRATE, SALINITY, SIGMA-THETA, TOTAL ALKALINITY (TA), WATER TEMPERATURE, pH, phosphate and silicate. The instruments used to collect these data include CTD and bottle.

These data were collected by Donald C. Melrose of NMFS/NEFSC/Narragansett Lab and Denis Pierrot, Leticia Barbero, and Rik Wanninkhof of NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML) as part of the Coastal_Delware_II_2012 dataset. CDIAC associated the following cruise ID(s) with this dataset: DE_1202

The Global Coastal Carbon Data Project data includes the bottle (discrete) and surface (underway) carbon-related measurements from coastal research cruises, the data from time series cruises and coastal moorings. The coastal regions data are very important for the understanding of carbon cycle on the continental margins.
DOI: 10.25921/prc6-2058
title: Dissolved inorganic carbon, pH, alkalinity, temperature, salinity and other variables collected from discrete sample and profile observations using CTD, bottle and other instruments from NOAA Ship PISCES in the North Atlantic Ocean from 2012-10-27 to 2012-11-13 (NCEI Accession 0157447)

description: This dataset includes chemical, discrete sample, physical and profile data collected from NOAA Ship PISCES in the North Atlantic Ocean from 2012-10-27 to 2012-11-13. These data include AMMONIUM (NH4), DISSOLVED INORGANIC CARBON (DIC), DISSOLVED OXYGEN, HYDROSTATIC PRESSURE, NITRATE, SALINITY, SIGMA-THETA, TOTAL ALKALINITY (TA), WATER TEMPERATURE, pH, phosphate and silicate. The instruments used to collect these data include CTD and bottle.

These data were collected by Donald C. Melrose of NMFS/NEFSC/Narragansett Lab and Denis Pierrot, Leticia Barbero, and Rik Wanninkhof of NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML) as part of the Coastal_Pisces_2012 dataset. CDIAC associated the following cruise ID(s) with this dataset: PC1207

The Global Coastal Carbon Data Project data includes the bottle (discrete) and surface (underway) carbon-related measurements from coastal research cruises, the data from time series cruises and coastal moorings. The coastal regions data are very important for the understanding of carbon cycle on the continental margins.
DOI: 10.15468/dl.3kjzfv
title: Occurrence Download

description: A dataset containing 135405305 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 135405305 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053375-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3334/cdiac/otg.aoml_bigelow_ecoast_2011_2012
title: Partial pressure (or fugacity) of carbon dioxide, eater temperature, salinity and other variables collected from surface underway observations during NOAA Ship Henry B. Bigelow cruises in the North Atlantic Ocean, US East Coast from 2011-03-01 to 2012-08-24 (NCEI Accession 0157459)

description: This dataset includes surface underway, chemical, meteorological and physical data collected during NOAA Ship Henry B. Bigelow cruises in the North Atlantic Ocean, US East Coast from 2011-03-01 to 2012-08-24. These data include partial pressure (or fugacity) of carbon dioxide - atmosphere, partial pressure (or fugacity) of carbon dioxide - water, barometric pressure, sea surface salinity and sea surface temperature. The instruments used to collect these data include Carbon dioxide (CO2) gas analyzer and Shower head chamber equilibrator for autonomous carbon dioxide (CO2) measurement. These data were collected by Christopher C. Taylor and Jonathan A. Hare of NMFS/NEFSC/Narragansett Lab and Kevin F. Sullivan and Rik Wanninkhof of NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML) as part of the Bigelow_ECoast_2011_2012 dataset. The Global Coastal Carbon Data Project data includes the bottle (discrete) and surface (underway) carbon-related measurements from coastal research cruises, the data from time series cruises and coastal moorings. The coastal regions data are very important for the understanding of carbon cycle on the continental margins.
DOI: 10.3334/cdiac/otg.coast_gu2014bt
title: Dissolved inorganic carbon, pH, alkalinity, temperature, salinity and other variables collected from discrete sample and profile observations using CTD, bottle and other instruments from NOAA Ship GORDON GUNTER in the North Atlantic Ocean and Stellwagen Bank National Marine Sanctuary from 2014-03-01 to 2014-03-08 (NCEI Accession 0157464)

description: This dataset includes chemical, discrete sample, physical and profile data collected from NOAA Ship GORDON GUNTER in the North Atlantic Ocean and Stellwagen Bank National Marine Sanctuary from 2014-03-01 to 2014-03-08. These data include AMMONIUM (NH4), DISSOLVED INORGANIC CARBON (DIC), DISSOLVED OXYGEN, HYDROSTATIC PRESSURE, NITRATE, SALINITY, SIGMA-THETA, TOTAL ALKALINITY (TA), WATER TEMPERATURE, pH, phosphate and silicate. The instruments used to collect these data include CTD and bottle.

These data were collected by Donald C. Melrose of NMFS/NEFSC/Narragansett Lab and Denis Pierrot, Leticia Barbero, and Rik Wanninkhof of NOAA Atlantic Oceanographic and Meteorological Laboratory (AOML) as part of the Gordon_Gunter_Coastal_Cruises_2014 dataset. CDIAC associated the following cruise ID(s) with this dataset: GU_1401
DOI: 10.15468/cp4kp6
title: Kliopsyllus schminkei sp. n. (Copepoda, Harpacticoida, Paramesochridae) - a new copepod from the southeast Atlantic deep sea (Angola Basin) *

description: This dataset contains the digitized treatments in Plazi based on the original journal article Veit-Köhler, Gritta, Drewes, Jan (2009): Kliopsyllus schminkei sp. n. (Copepoda, Harpacticoida, Paramesochridae) - a new copepod from the southeast Atlantic deep sea (Angola Basin) *. Zootaxa 2096 (1): 313-326, DOI: 10.11646/zootaxa.2096.1.18, URL: https://biotaxa.org/Zootaxa/article/view/zootaxa.2096.1.18AbstractA new species of Kliopsyllus (Paramesochridae) has been collected with a multicorer from the abyssal Angola Basin in 2000 (on the DIVA-1 cruise, RV Meteor 48/1). Kliopsyllus schminkei sp. n. is the second most abundant Kliopsyllusspecies in the Angola Basin and raises the number of valid members of the genus to 33. The new species is placed in the genus Kliopsyllus because of its typical segmentation and the setation of the swimming legs. K. schminkei sp. n. is unique within the genus and can be distinguished from the other species by a large apical pore on the P5 baseoendopodal lobes of the male, a length:width ratio of the furcal rami of 9 to 10: 1 in both sexes, and an exceptional ratio of the length of the furcal rami to the whole body size of one fourth in the female and one fifth in the male. The new species is one of the four deep-sea Kliopsyllus -species described until now.
DOI: 10.6084/m9.figshare.30882779
title: Raw data of <i>Nontrivial Stark Shift Effect and Switchable Chiroptical Activity of Coupled Magic Size Nanoclusters</i>

description: Raw data of Nontrivial Stark Shift Effect and Switchable Chiroptical Activity of Coupled Magic Size Nanoclusters
DOI: 10.6084/m9.figshare.30882779.v1
title: Raw data of <i>Nontrivial Stark Shift Effect and Switchable Chiroptical Activity of Coupled Magic Size Nanoclusters</i>

description: Raw data of Nontrivial Stark Shift Effect and Switchable Chiroptical Activity of Coupled Magic Size Nanoclusters
DOI: 10.15468/dl.82hc3u
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Swedish Malaise Trap Project (SMTP) - Asilidae"
 ]
}

 The dataset includes 90 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053411-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c53776812
title: MassIVE MSV000100220 - RNF4_mediated degradation of Groucho_TLE1 releases repression for zygotic genome activation
title: Zygotic genome activation (ZGA) is regulated by maternally provided factors in totipotent embryos. How reprogramming factors are kept inactive in oocytes and activated to initiate ZGA in embryos has remained elusive for decades. Here, we report the discovery that the SUMO-targeted E3 ubiquitin ligase RNF4 is an essential activator of ZGA by targeting the transcriptional co-repressor Groucho/TLE1 for degradation. We identified RNF4 as a candidate regulator in a targeted knockdown screen for ZGA in 2-cell mouse embryos. Using an Rnf4e8-AID degron mouse model, we demonstrate that RNF4 is required for transcription of &gt;1500 genes including ZGA genes regulated by OBOX transcription factors in 2-cell embryos. Ultra-high sensitivity mass spectrometry of single Rnf4e8-AID/e8-AID embryos identified Groucho/TLE1 as a target of RNF4. Mutation of potentially SUMOylated lysine residues stabilized TLE1 and caused downregulation of genes that are also downregulated upon RNF4 degradation, suggesting that TLE1 degradation is one of the mechanisms by which RNF4 orchestrates ZGA. Our work implies that RNF4-mediated degradation of Groucho/TLE1 converts inactive to active totipotency reprogramming factors for ZGA.
DOI: 10.5281/zenodo.17937079
title: Tuning the Photophysical Properties of Flavins by Attaching an Aryl Moiety via Direct C–C Bond Coupling

description: Palladium-catalyzed Suzuki reactions of brominated flavin derivatives (5-deazaflavins, alloxazines, and isoalloxazines) with boronic acids or boronic acid esters that occur readily under mild conditions were shown to be an effective tool for the synthesis of a broad range of 7/8-arylflavins. In general, the introduction of an aryl/heteroaryl group by means of a direct C–C bond has been shown to be a promising approach to tuning the photophysical properties of flavin derivatives. The aryl substituents caused a bathochromic shift in the absorption spectra of up to 52 nm and prolonged the fluorescence lifetime by up to 1 order of magnitude. Moreover, arylation of flavin derivatives decreased their ability to generate singlet oxygen.
DOI: 10.5281/zenodo.17937080
title: Tuning the Photophysical Properties of Flavins by Attaching an Aryl Moiety via Direct C–C Bond Coupling

description: Palladium-catalyzed Suzuki reactions of brominated flavin derivatives (5-deazaflavins, alloxazines, and isoalloxazines) with boronic acids or boronic acid esters that occur readily under mild conditions were shown to be an effective tool for the synthesis of a broad range of 7/8-arylflavins. In general, the introduction of an aryl/heteroaryl group by means of a direct C–C bond has been shown to be a promising approach to tuning the photophysical properties of flavin derivatives. The aryl substituents caused a bathochromic shift in the absorption spectra of up to 52 nm and prolonged the fluorescence lifetime by up to 1 order of magnitude. Moreover, arylation of flavin derivatives decreased their ability to generate singlet oxygen.
DOI: 10.5281/zenodo.17101954
title: Nighttime artificial light intensity in local climate zones: A comparative study for global cities

description: Introduction

These archives contain data and results used in the submitted manuscript titled "Urban light pollution in local climate zones: a comparative study for global cities". There are several (sub)folders with various data.

A. Archive results-LCZs.zip

1) 01_Abs-values: Absolute values of the nighttime radiance (NTR) in delineated local climate zones preceded by an R script in PNG and SVG format (boxplots).

2) 02_Differences: Absolute and relative differences of the nighttime radiance (NTR) between the analyzed years and the reference year 2012. Outputs were produced by an R script as boxplots in PNG and SVG format. Note that some relative differences should be misleading (e.g., in the case of very small values of NTR, the relative increase can be enormous).

3) 03_Cities: Individual results for all the cities, including all boxplots, GIS layers (GeoTiff), maps (PNG), and tables (CSV). Some cities have a different name than was used in the manuscript (e.g., Duisburg-Dortmund vs. Ruhr Region). Part of this folder is also the LCZ layer.

B. Archive CityAreas.zip

A set of 32 metropolitan areas was selected using the population ranking for individual continents. The spatial extent of these areas was based on the Global urban and rural settlement dataset (Liu et al., 2024). The second step was evaluation using the first version of the Global Urban Polygons and Points Dataset (GUPPD)(CEISIN Columbia University and JRC European Commission, 2024). Finally, each selected polygon extent was extended manually about its surroundings, using satellite images, to consider the effects of (sub-) urbanisation.

C. Archive results-Cities-CorrPlots.zip

The difference between the zones was tested using analysis of variance (ANOVA) and the Tukey HSD test. Evaluating the Tukey HSD test, the difference between individual classes was used as a 'hit' indicator in the correlation matrix ('hit' means statistically significant difference). In most cases, 'hits' were identified in the majority of the LCZ combinations. Note that the number of grid cells for each LCZ needs to be considered.

D. Archive results-table-LP_2012-2023.zip

Aggregated table for all the analyzed cities. It contains the following columns: LCZ_code (Integer) with the code of the grid's LCZ, City (String) name, Group (String), and Y2012 (up to Y2023)(Decimal) with NTR values. Note that the first two rows are identical; it is not an error (the surface is practically the same).
DOI: 10.15468/dl.549sq3
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Calotriton arnoldi",
 "Year 1971-2010"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053412-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7289/v5rb72wh
title: Dissolved inorganic carbon, total alkalinity, pH on Total Scale, nutrients and other variables collected from profile and discrete sample observations using CTD, Niskin bottle and other instruments during NOAA Ship Gordon Gunter cruises in the Gulf of Maine, Georges Bank, and Mid-Atlantic Bight from 2016-05-21 to 2016-06-20 (NCEI Accession 0168902)

description: This dataset contains dissolved inorganic carbon, Total alkalinity, pH on Total Scale, nutrients and other variables measured from profile discrete measurement in the Northeast coast of the US. Increasing amounts of atmospheric carbon dioxide from human industrial activities are causing changes in global ocean carbon chemistry resulting in a reduction in pH, a process termed ocean acidification. Studies have demonstrated adverse effects on calcifying organisms, particularly some invertebrates, corals, sea urchins, pteropods, and coccolithophores. This effort is in support of the coastal monitoring and research objectives of the NOAA Ocean Acidification Program (OAP).
DOI: 10.7289/v5mk6b6n
title: Dissolved inorganic carbon, total alkalinity, pH on Total Scale, nutrients and other variables collected from profile and discrete sample observations using CTD, Niskin bottle and other instruments in the Gulf of Maine, Georges Bank, and Mid-Atlantic Bight from 2016-08-07 to 2016-11-11 (NCEI Accession 0169051)

description: This dataset contains dissolved inorganic carbon, Total alkalinity, pH on Total Scale, nutrients and other variables measured from profile discrete measurement in the Northeast coast of the US. Increasing amounts of atmospheric carbon dioxide from human industrial activities are causing changes in global ocean carbon chemistry resulting in a reduction in pH, a process termed ocean acidification. Studies have demonstrated adverse effects on calcifying organisms, particularly some invertebrates, corals, sea urchins, pteropods, and coccolithophores. This effort is in support of the coastal monitoring and research objectives of the NOAA Ocean Acidification Program (OAP).
DOI: 10.15468/dl.5bpcky
title: Occurrence Download

description: A dataset containing 6383 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "OccurrenceStatus is Present",
 "TaxonKey is Carpobrotus edulis"
 ]
}

 The dataset includes 6383 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053413-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17600758
title: Bathymetry of Lake Motzfeldt (South Greenland)

description: This dataset contains bathymetric measurements of Lake Motzfeldt in South Greenland. The measurements were conducted with a Kongsberg EA440 single-beam echo-sounder with a 38|200 khz combi transducer. The instrument was mounted to an aluminium frame attached to an inflatable boat. An Emlid Reach RS3 GNSS receiver was used for geolocation. The measurements were corrected for sound velocity based on a CTD measurement in the lake. The data was manually cleaned from outliers. The data was aquired during two field campaings in August 2024 and August 2025.

We provide the cleaned xyz data in a .csv format for both frequencies and both field campaings. Additionally, we provide xyz points for the shoreline of the lake.



LM_2024_38khz.csv

LM_2024_200khz.csv

LM_2025_38khz.csv

LM_2025_200khz.csv

LM_shoreline.csv


Furthermore, we provide gridded bathymetry in .tif format for the 200 khz frequency at 25 m resolution:



LM_bathy_grid_positive.tif


The grid files were produced using the Python implementation of the Generic Mapping Tool (PyGMT), by calculating a block-median with a grid cell-size of 25 m, before applying a spline interpolation function with a tension factor of 0.6. The coordinate system is EPSG 3413.

Reference: Vacek, F., Nick, F. M., Benn, D., Zwarts, M. P. A., Immerzeel, W., and van de Wal, R. S. W.: Contrasting dynamics of lake- and marine-terminating glaciers under same climatic conditions, EGUsphere [preprint], https://doi.org/10.5194/egusphere-2025-5733, 2025.