cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/1brhfc
title: Données de réplication pour : Trait-environment associations diverge between native and alien breeding bird assemblages on the world's oceanic islands.

description: This archive contains the material necessary to replicate the analyses performed in Rault et al (2023) : Trait-environment associations diverge between native and alien breeding bird assemblages on the worlds oceanic islands. Global Ecology and Biogeography. Aim: To investigate spatial variations in the ecological trait structure of breeding bird assemblages across the world’s oceanic islands. To test the hypothesis that native and naturalized alien bird species are filtered by different processes, leading to diverging associations between traits and insular environmental gradients. Location: Oceanic islands worldwide. Time period: Current. Major taxa studied: Terrestrial breeding birds. Methods: We assessed the composition of breeding terrestrial bird assemblages from the extent-of-occurrence maps of 3170 native and 169 naturalized alien species occurring on 4660 oceanic islands. We quantified the ecological trait structures of species assemblages with respect to diet, mobility, and body mass as the standardized distance between a mean pairwise trait distance index and its expectation from a null model. We used spatial generalized additive models to relate trait structure to proxies of environmental conditions and human impact on land for all species, native species only, and alien species only. Content of the archive: The archive encompasses the data and R script necessary to replicate the analyses described in the Materials and Methods of the associated publication. The data set encompasses data on extant terrestrial breeding birds living on oceanic islands worldwide extracted from Birdlife Internationals extent of occurrence geodatabase, and ecological traits associated with these species compiled from multiple sources. The archive encompasses the data and R script necessary to replicate the analyses described in the Material and Methods of the associated publication. Data collection, compilation, origin and analytical pipeline are described in the article.
DOI: 10.57745/1owxrk
title: formic acid (HCOOH) MIR spectroscopy

description: The research context is SI (système international)-referenced high resolution molecular spectroscopy using mid-infrared optical frequency synthesis. This research domain is developped to improve molecular spectroscopy with outcomes in atmosphere physics, astrophysics and fundamental constant determination. The data correspond to 1440 recordings of the nu6 (J’ = 21, Ka’ = 2, Kc’ = 20) ← (J” =21, Ka” = 3, Kc” = 19) vibrational transition at 9.17 µm in HCOOH taken under various experimental conditions given in the 5 first rows. The first column, from line 6 to the last one gives the laser frequency in Hz with respect to the center of the line. Columns 2 to 1441 lines 6 to the last one give the saturated absorption signal in arbitrary unit. The signal is obtained using third harmonic phase-sensitive detection. The detailled structure of the data file is explained in the readme file. The data can be used to plot 1440 saturated absorption lines. They can be fitted using saturated absorption line profiles to determine the line center and the linewidth.
DOI: 10.57745/1xgamx
title: Hydrological reconstruction (1960-2021) of the Butiznica DRN (Croatia)

description: Hydrological model outputs at daily time step for the reconstruction period (1960-2021) in the Butiznica DRN (Croatia). Simulated discharge, baseflow an state of flow (flowing/dry) is spatially distributed at the reach scale. Other hydroclimatic variables (temperature, precipitation, rainfall, snowfall, potential evapotranspiration, actual evapotranspiration, vegetation interception, snow water equivalent, saturation of the soil layer, saturation of the grounwater layer) are spatially aggregated at the catchment scale.
DOI: 10.57745/21cqds
title: Potential range the brown marmorated stinkbug Halyomorpha halys (Stål, 1855) according to current and future climate conditions: results from species distribution modeling

description: The dataset provides the rasters of climate suitability for the Brown Marmorated StinkBug (Halyomorpha halys) according to current and future climate conditions used in Streito et al 2021 [Streito, J.-C., Chartois, M., Pierre, É., Dusoulier, F., Armand, J.-M., Gaudin, J., Rossi, J.-P., 2021. Citizen science and niche modeling to track and forecast the expansion of the brown marmorated stinkbug Halyomorpha halys (Stål, 1855). Scientific Reports 11, 11421. https://doi.org/10.1038/s41598-021-90378-1]. The methods used to generate the dataset are described in this reference.
DOI: 10.57745/3cqhli
title: Géoréférencement sites Nivelle

description: Ce classeur Excel propose les coordonnées GPS (google earth points en degrés/minutes/secondes) de tous les points d'intérêts sur la Nivelle pour l'UMR Ecobiop.
DOI: 10.57745/0jylzu
title: Genotypic data of near-diagnostic genetic markers for four western European white oak species identification

description: The data set comprises three files that served for the discovery and validation of 38 SNP markers that exhibit near diagnostic frequency profiles among four western European white oak species (Quercus petraea, Quercus pubescens, Quercus pyrenaica and Quercus robur): File "TrainingPopulationsSet1" File "TrainingPopulationsSet2" File "ValidationPopulations"
DOI: 10.57745/1g5uqp
title: Untargeted metabolomic (LC-MS-MS) analysis of the spermosphere of eight common bean genotypes (Phaseolus vulgaris L)

description: Effect of plant genotype and production site on metabolite diversity of germinating common bean (Phaseolus vulgaris L.) seed exudates analysed by untargeted metabolomics LC-MS/MS.
DOI: 10.57745/1p18zo
title: In vivo data collected from a study on 49 rabbits to evaluate the safety, dose-finding and stability of a vaccine against Clostridioides

description: In vivo data collected from a study on 49 rabbits to evaluate the safety, dose-finding and stability of a vaccine against Clostridioides difficile infection. English (2024-02-22)
DOI: 10.57745/1vsdog
title: Effect of metabolic rate on time-lag changes in otolith microchemistry: an experimental approach using Salmo trutta

description: We reported significant lags (i.e. weeks to months) between changes in water chemistry and subsequent change in otolith composition and highlighted substantial inter-individual variations in the timing and magnitude of Sr/Ca and Ba/Ca responses Data published in doi:10.1242/jeb.245265.
DOI: 10.57745/26aoq3
title: RPG complété 2020 Région Limousin

description: RPG complété 2020. Complète le RPG campagne 2020 pour les départements de la région Limousin (19, 23, 87). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2022.
DOI: 10.57745/2hitdv
title: DEPHY FERME network's low input winegrowing systems: performances and traceability

description: A dataset featuring the traceability of farming operations for 343 winegrowing systems. These systems are demonstration farms, scattered accross mainland France and committed to a voluntary network to reduce their pesticide-use. Showcased data is associated with social, technical, economical and environmental performance indicators at system level; and covers two periods: 1 to 3 campains prior to network entry & the 2017-2020 campaigns. Data tables available: Raw data spreadsheet of farming operations. Computed data at farm level : performance indicators (Treatment Frequency Index, workload, expenses, grenhouse gas emissions, etc.) Glossary and description of the variables All data have been stored and produced via the Agrosyst information system, then selected and consolidated by the authors.
DOI: 10.57745/2ztmgr
title: QUANTIF - Crop yield loss due to weed biomass, seed predators and farming systems

description: Data collected to quantify the contribution of weed seed predators to crop yield in arable lands
DOI: 10.57745/3yxtlg
title: Source Data for G4 density in M. arenaria

description: We used the G4-Hunter software76 with a window size of 25 and a minimal score of 1.2 to detect regions possibly forming G4-quadruplexes on the composite terminal repeats as well as the whole genome sequences of Meloidogyne arenaria. Using an in-house script, we retrieved only the non-overlapping positions, distant by more than 25 bp, and the score for each G4-quadruplex position, and we plotted their frequency using Rstudio.
DOI: 10.57745/1c8tim
title: Données sur les niveaux d'empathie et de créativité de 2 groupes de 22 et 23 étudiants - Balle assise et Handball

description: Il s'agit de données relatives à des quasi-expérimentations (expérimentations menées en milieu écologique) réalisées avec 45 étudiants en STAPS de l'Université de Picardie Jules Verne à Amiens. Pour commencer, nous réalisons la passation d'un questionnaire sociométrique auprès des étudiants afin de mettre au jour le niveau d'empathie socio-affective de chaque participant. Ensuite, ces derniers étaient amenés à participer à deux jeux collectifs : la Balle assise et le handball. Le déroulement des jeux est filmé. Nous relevons ensuite l'ensemble des communications praxiques de chaque joueur afin de questionner les liens entre la créativité et l'empathie dans ces deux jeux collectifs. Ce document présente les résultats obtenus pour différents indicateurs de créativité (1)et d'empathie (2). Pour la créativité (1), les trois indicateurs sont la fluidité (nombre de communications praxiques du joueur), la flexibilité (variabilité des communications praxiques) et la convergence (note de 0 à 10 attribuée par des juges formés sur la prestation créative globale du joueur). Pour l'empathie (2), nous avons deux indices: l'empathie instrumentale (niveau d'empathie du joueur en situation de jeu) et l'empathie socio-affective (obtenue à partir du questionnaire sociométrique. Hormis pour l'empathie socio-affective, nous obtenons chacun de ces indices aussi bien pour le handball que pour la balle assise.
DOI: 10.57745/1fb3sd
title: Cyathostomin genomics

description: This repository contains the shell and R scripts used to investigate the genome structure, transcriptomic differences between males and females, and genome-wide diversity across space and time of Cylicocyclus nassatus.
DOI: 10.57745/1wdpe4
title: Distribution of G4s and Minc repeats on M. incognita contigs

description: The density of Minc composite repeats per 100kb window is represented by a color gradient with positive values (red) indicating a density in the sense strand and negative values (blue) indicating a density on the reverse complement strand. Gray triangles above bars indicate regions of the contigs where less than 100% of the repeats are on the same strand. The heights of bars in the histogram represent the density of G4-quadruplex forming regions in the same windows. Only contigs containing repeat arrays and shorter than the N80 value are represented. The same figure for contigs with a size above or equal to N80 is available as Figure 3 in the manuscript.
DOI: 10.57745/2vaeoq
title: P. bellottii stock assessment in Ghana - Côte d’Ivoire by length frequencies analysis - Rectified pseudo-cohort analysis LBB –

description: In this report, included within WP1 - DEMERSTEM, we apply two data-poor adapted and length-based methods, which are first introduced, before application to the P. senegalensis stock of Ghana - Côte d’Ivoire.
DOI: 10.57745/2wxos0
title: Metagenomic data associated (raw, merged, normalized and analyzed) associated to the evaluation of the preventive treatments for intestinal mucositis in a murine model using Lacticaseibacillus rhamnosus L156.4 and Lacticaseibacillus rhamnosus

description: Shotgun metagenomic sequencing data were generated from fecal samples collected from BALB/c mice treated with live, inactivated, or supernatant preparations of Lacticaseibacillus rhamnosus L156.4 or LGG, as part of a 5-FU-induced intestinal mucositis model. A total of 28 samples were processed. DNA was extracted using the QIAamp DNA Stool Mini Kit and sequenced on an Illumina HiSeq 2500 platform (2 × 150 bp paired-end). Raw reads were quality-checked (FastQC), filtered (Phred score &lt; 30, via Fastp), and taxonomically classified using Kraken2 against the NCBI nr + euk database. Downstream analyses included bacterial community profiling, PCA (Bray-Curtis), and diversity indices (Shannon, Chao1, Pielou) computed using STAMP and Vegan (RStudio). Dataset includes raw FASTQ files, taxonomic classification tables, and diversity metrics.
DOI: 10.57745/2ype0f
title: L'UTILISATION DE LA VÉGÉTATION POUR PROTÉGER LE SOL CONTRE L'ÉROSION, LES GLISSEMENTS DE TERRAIN ET LES TEMPÊTES

description: Rapport décrivant l'utilisation de la végétation pour fixer le sol sur les pentes et aider à protéger le sol contre les glissements de terrain peu profonds, l'érosion et les tempêtes
DOI: 10.57745/37gmkp
title: Données sol - fosses

description: 60 fosses ont été creusées (Hivers 2020) à la pelleteuse jusqu’à atteindre la roche mère. Les prélèvements ont été faits par plages fixes (0-10 cm, 10-20 cm, 20-40 cm, 40-60 cm, 60-100 cm, puis tous les mètres) par les scientifiques et le collectif de bénévoles en mars et avril 2021. Une description pédologique a également été faite par des pédologues confirmés. Les sols ont été analysés au sein d’INRAE-BEF et dans la plateforme SILVATECH de l’infrastructure nationale de recherche IN-SYLVA –France
DOI: 10.57745/3li3fj
title: Aphid adaptation to cucurbits: sugars, cucurbitacin and phloem structure in resistant and susceptible melons

description: Dataset of the publication Sadon et al, 2022, "Aphid adaptation to cucurbits: sugars, cucurbitacin and phloem structure in resistant and susceptible melons. " Abundance and variability of phloem-associated metabolites in six melon genotypes. We quantified seven phloem-associated metabolites in the parental lines and the pairs of isogenic and near-isogenic lines.
DOI: 10.57745/3vmb3y
title: Mobi-Switch : a boardgame about urban mobility sustainability

description: Mobi-Switch is a board game developed by a team from INRAE's UMR RECOVER, as part of the ANR SwITCh project. The aim of the game is to raise awareness of the sustainability of urban mobility and the challenges associated with it. Players take on the role of elected representatives wishing to improve the sustainability of mobility on their territory. In addition to the collective goal of sustainable mobility, each player is assigned a personal goal. In each round (6 in total, corresponding to the 6 years of a municipal mandate), each player chooses a project from the cards in his or her hand, and tries to convince the others to adhere to his or her project. Each project has an impact on the indicators shown on the game board. It's up to the players to make the right choices to steer mobility towards greater sustainability, while trying to achieve their personal goals.
DOI: 10.57745/1x4qyo
title: (FAIRCHAIN)CS-Gre_datapaper

description: This dataset contains the data related to the LCA of the baseline scenario for the Greek CS of FAIRCHAIN project: - Raw data; - LCI; - LCIA; - Possible extra data (sensitivity analysis, etc.). A related data paper is submitted to data in brief.
DOI: 10.57745/2cocon
title: Multi-wavelength temporal sequences and spectra of the solar granulation in the quiet Sun at disk centre from space missions

description: This dataset contains sequences (6 hours duration) of the solar granulation, at disk centre, at several wavelengths of the photosphere and the chromosphere, obtained at the same time. The SOT onboard HINODE provided images in the blue continuum and G band (photosphere); the AIA instrument onboard SDO provided also UV images (chromosphere); the IRIS satellite provided UV slit jaw images at two wavelengths (photosphere and chromosphere) together with spectra of MgII h and k lines. These sequences concern the quiet Sun at disk centre and therefore are of general purpose.
DOI: 10.57745/2cxmru
title: Environmental drivers of local and temporal variations in the community of oak-associated borers (Coleoptera: Buprestidae)

description: This dataset contains the R script used for the paper "Environmental drivers of local and temporal variations in the community of oak-associated borers (Coleoptera: Buprestidae)", currently published in the peer-reviewed journal "European Journal of Forest Research". During the BUCHE (2016-2018) and the CANOPEE (2019-2021) projects, the P2E and INRAE EFNO teams sampled Agrilinae in the canopy of six oak-dominated forests in France (Orléans, Vierzon, Marcenat, Chantilly, Boulogne, Châteauroux). Insects were caught with green multi-funnel traps hung in the canopy of oak tree. Collected insects were identified at the species level by Aurélien Sallé, Elodie Le Souchu and Xavier Pineau at the University of Orléans. All the analyses were performed by Elodie Le Souchu. Aurélien Sallé supervised the work.
DOI: 10.57745/4hns1j
title: Physio-morphological characterization of sunflower response to cold

description: Phenotypic and physiologic data of sunflower response to night chilling stress
DOI: 10.57745/1jyqbj
title: Bilberrymap pilot area Västerbotten Sweden

description: Local bilberry map about the most potential location for bilberry picking located in pilot area in Västerbotten, Sweden. Map was produced and added to ICT-tool for berry picking phone-application in the project.
DOI: 10.57745/1rwgzk
title: Textual Annotation and Provenance Ontology

description: Textual Annotation and Provenance Ontology (TAPO) stores the results of NLP workflow processes and describes all the provenance information like tools used. TAPO is an extention of W3C Web Annotation Ontology dedicated to store the process that have generated the annotation. TAPO was first used to annotate French agricultural alert bulletins called : Bulletin de Santé du Végétal. This ontology was build during the D2KAB project.
DOI: 10.57745/2ykutc
title: TREEPEACE: Fluctuating selection and rapid evolution of oaks during recent climatic transitions

description: This dataset describes the phenotypic assessments collected in a common garden located at INRAE Pierroton research station in the South West of France (44°44’N, 00°46’W). The study compares three age structured cohorts of sessile oak (Quercus petraea) sampled in three different forests. Each cohort comprised a set of open pollinated progenies. The experimental layout was a complete block design with three replicates; open-pollinated families were randomly allocated to row plots in each block, regardless of the cohort or forest from which they originated. Sixteen phenotypic traits were assessed. Depending on the trait, assessments were made either at the single tree level, or at the plot level or at the family level. This dataset is composed of three files: The file Treepeace_SingleTree_level.csv provides phenotypic data surveyed at the tree level. The file Treepeace_Plot _level.csv provides phenotypic data surveyed at the plot level. The file Treepeace_Progeny _level.csv provides phenotypic data surveyed at the progeny level.
DOI: 10.57745/3eelgx
title: Gear Statistical tolerance analysis results

description: The provided dataset is the result of many gears simulations based on complex gears models. In this file, 40000 statistical tolerance analysis results based on Monte-Carlo simulation (MC sample size = 1000000). The following data are labeled via different colors and detailed as follows: (1). 15 inputs parameters (colored in light blue in the Excel file), some are tolerances defined by designers and applied on the gears characteristics as bounders to meet, and some are shifts on key parameters of these gears mainly due to their manufacturing. The last input parameter is the Kinematic Transmission Error (KTE). (2). Three outputs are available (colored in gold in the provided file): the number of non- conformity of each type of produced gears and the most important output the amount of final conformity rate (the most expensive ones).
DOI: 10.57745/3j1xpo
title: R package WallomicsData

description: Datasets from the WallOmics project. Contains phenomics, metabolomics, proteomics and transcriptomics data collected from two organs of five ecotypes of the model plant Arabidopsis thaliana exposed to two temperature growth conditions. Exploratory and integrative analyses of these data are presented in Durufle et al (2020) (doi:10.1093/bib/bbaa166) and Durufle et al (2020) (doi:10.3390/cells9102249).
DOI: 10.57745/3qr6sf
title: Characteristics of material flows and by-products from F (quantity and quality of the products that will be processed)

description: This dataset contains raw data on the characterization of raw materials (apple pomace, grape pomace, and molasses with sugar content estimated by Brix), semi-finished products (pomace wine) with parameters like Brix, pH, acidity, and alcohol content, as well as apple pomace fermented(composition in protein, mycotoxins, ash, various minerals), and finally apple and grape pomace vinegar: acidity, pH, alcohol content. Mass balances of different raw materials, by-products, and finished products are presented. Data were collected through trials on pilot installations and at Cogiterres production site during the years 2021, 2022, and 2023. A comprehensive chemical analysis was performed on apple pomace vinegar to determine its composition. This analysis included the identification of polyphenols, organic acids, sugars, cations, anions, as well as alcohol and methanol content
DOI: 10.57745/3qyciy
title: Eco-campus summer school on infiltration processes

description: Stormwater management by means of infiltration structures such as water sensitive urban design (WSUD) is widely implemented around the world. The understanding of mechanisms related to infiltration represents a great interest for researchers and students involved in research activities or training in line with stormwater management. The new research team Reseed, gathering researchers from INSA Lyon DEEP and IRSTEA Reversal (INRAE on January 2020), in the framework of OTHU, is organizing a bi-annual summer school on this topic. This project-based learning workshop drives the participants through the different steps necessary to carry out their researches from smart metrology to data science and web tools for modelling purposes.
DOI: 10.57745/3zyyv9
title: Dataset of the measured flow intrusion form a flooded street to an adjacent building

description: Within the French national ANR DEUFI project (2018-2023), the Task WP1a aimed at measuring the discharge flow intrusion from a flooded street to a building through openings such as damaged doors, windows, etc.. We also tested the influence of obstacles located on the facade or in the street on this intrusion discharge.