cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10679303
title: Dataset acquired during the drainage of Bossons lake in summer 2023

description: All given time are UTC. 

This dataset contains:



Surverse_long_Zlac_15MN.csv : lac level from piezometer since 1st june 2023 every 15 mn, 

Bosson_2023_Halfh.dat : data from piezometers P2 et P3 and thermistances T1 to T6,

data_Tw_chenal_entrance.csv : water temperature at the entrance of chanel, 

GPS_LacLevel.csv : GNSS measurements of lac elevation,

elevation_chenal_entrance.csv : GNSS mesurements of the altitude of the chanel entrance,

chenal_Bossons_date.csv : GNNS measurements of the chanel ice bottom at different dates (31 July 13h30 et 16h50, 1st August 12h30 and 14h30, 2 August 9h00 et 11h50 et 8 August 2023 12h00)

section_chenal_date.csv : measurements of the ice chanel transverse section the 1st August at 8h30 and 13h,

discharge_icechenal.csv : measurements of water discharge in the ice chanel the 31st July, 1st and 2nd August 2023,

discharge_crosette_2023.csv : measurements of water discharge in the Crosette stream the 1st June and 5 July 2023,

Hypsometry_2023-06-26.dat : hypsometry from the bathymetry of 26 June 2023,

PureEmpirical_SeismicReconstructedDischarge.csv : water discharge entering the lake from the pure empirical method using sismic data,

SemiEmpirical_SeismicReconstructedDischarge.csv : water discharge entering the lake from the semi-empirical method using sismic data,

model_output_surverse_10MN.csv : output from the model for the reference simulation.
DOI: 10.5281/zenodo.10679304
title: Dataset acquired during the drainage of Bossons lake in summer 2023

description: All given time are UTC. 

This dataset contains:



Surverse_long_Zlac_15MN.csv : lac level from piezometer since 1st june 2023 every 15 mn, 

Bosson_2023_Halfh.dat : data from piezometers P2 et P3 and thermistances T1 to T6,

data_Tw_chenal_entrance.csv : water temperature at the entrance of chanel, 

GPS_LacLevel.csv : GNSS measurements of lac elevation,

elevation_chenal_entrance.csv : GNSS mesurements of the altitude of the chanel entrance,

chenal_Bossons_date.csv : GNNS measurements of the chanel ice bottom at different dates (31 July 13h30 et 16h50, 1st August 12h30 and 14h30, 2 August 9h00 et 11h50 et 8 August 2023 12h00)

section_chenal_date.csv : measurements of the ice chanel transverse section the 1st August at 8h30 and 13h,

discharge_icechenal.csv : measurements of water discharge in the ice chanel the 31st July, 1st and 2nd August 2023,

discharge_crosette_2023.csv : measurements of water discharge in the Crosette stream the 1st June and 5 July 2023,

Hypsometry_2023-06-26.dat : hypsometry from the bathymetry of 26 June 2023,

PureEmpirical_SeismicReconstructedDischarge.csv : water discharge entering the lake from the pure empirical method using sismic data,

SemiEmpirical_SeismicReconstructedDischarge.csv : water discharge entering the lake from the semi-empirical method using sismic data,

model_output_surverse_10MN.csv : output from the model for the reference simulation.
DOI: 10.6084/m9.figshare.11358281
title: MOESM1 of Downregulation of miR-542-3p promotes osteogenic transition of vascular smooth muscle cells in the aging rat by targeting BMP7

description: Additional file 1: Table S1. oVSMCs vs yVSMCs 2.0 fold upregulated miRNAs. Table S2. oVSMCs vs yVSMCs 2.0 fold downregulated miRNAs. Table S3. Predicted targets of miR-542-3p.
DOI: 10.6084/m9.figshare.11358281.v1
title: MOESM1 of Downregulation of miR-542-3p promotes osteogenic transition of vascular smooth muscle cells in the aging rat by targeting BMP7

description: Additional file 1: Table S1. oVSMCs vs yVSMCs 2.0 fold upregulated miRNAs. Table S2. oVSMCs vs yVSMCs 2.0 fold downregulated miRNAs. Table S3. Predicted targets of miR-542-3p.
DOI: 10.6084/m9.figshare.12931225
title: Marasmioid rhizomorphs in bird nests: Species diversity, functional specificity, and new species from the tropics

description: In tropical and subtropical rainforests, vegetative fungal rhizomorphs from the Marasmiineae are routinely used as construction material in bird nests. Because rhizomorphs seldom produce mushrooms within nests, the fungal species involved remain largely unknown. In turn, this limitation has prevented us from resolving broader questions such as whether specific fungal species are selected by birds for different functional roles (i.e., attachment, or parasite control). To fill some of these gaps, we collected 74 rhizomorph-containing bird nests from the Neo- and Afrotropics and used nuc rDNA internal transcribed spacer ITS1-5.8S-ITS2 (ITS) sequences to discriminate between rhizomorph-forming species. In total we recovered 25 Marasmiineae species used by birds in nest construction, none of which were shared between the Neotropics and the Afrotropics. We also collected Marasmiineae basidiomes in the vicinity of nests and used ITS sequences to match these sporulating morphs with nest rhizomorphs for nine species. Basidiomes from an additional five species were found fruiting from rhizomorphs incorporated within bird nests. Finally, an additional six species were putatively identified based on publicly available sequence data. Rhizomorphs of five species were found to be utilized almost exclusively as lining material in nests. Lining material comes in direct contact with nestlings and is hypothesized to play a role in parasite control. Rhizomorphs from 10 species were used to attach and anchor nests to substrates; we matched six of those to fruiting litter trap-forming species collected in the understory. Litter traps hold large quantities of fallen litter material, suggesting that birds may preferentially use rhizomorphs that are adapted to bearing heavy loads for nest attachment. Finally, we describe two species of <i>Marasmius—M. neocrinis-equi</i>, sp. nov., and <i>M. nidus-avis</i>, sp. nov.—that are commonly found associated with bird nests and show that rhizomorph production is common across the genus.
DOI: 10.6084/m9.figshare.17125820
title: Additional file 7 of YTHDC1-mediated VPS25 regulates cell cycle by targeting JAK-STAT signaling in human glioma cells

description: Additional file 7: Table S1. The mRNAs expression between NC and siVPS25.
DOI: 10.6084/m9.figshare.17125826
title: Additional file 8 of YTHDC1-mediated VPS25 regulates cell cycle by targeting JAK-STAT signaling in human glioma cells

description: Additional file 8: Table S2. Top KEGG enrichment for the down-expressed mRNAs.
DOI: 10.6084/m9.figshare.7164248
title: Additional file 2: of UBN1/2 of HIRA complex is responsible for recognition and deposition of H3.3 at cis-regulatory elements of genes in mouse ES cells

description: Table S3. Primers used for genome editing. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.11358557.v1
title: MOESM6 of Wheat straw increases the defense response and resistance of watermelon monoculture to Fusarium wilt

description: Additional file 6. KEGG pathway enrichment analysis of DEGs.
DOI: 10.6084/m9.figshare.11358560
title: MOESM7 of Wheat straw increases the defense response and resistance of watermelon monoculture to Fusarium wilt

description: Additional file 7. KEGG pathway enrichment analysis of DEGs in profile 1 and profile 6.
DOI: 10.6084/m9.figshare.11358560.v1
title: MOESM7 of Wheat straw increases the defense response and resistance of watermelon monoculture to Fusarium wilt

description: Additional file 7. KEGG pathway enrichment analysis of DEGs in profile 1 and profile 6.
DOI: 10.6084/m9.figshare.12931225.v1
title: Marasmioid rhizomorphs in bird nests: Species diversity, functional specificity, and new species from the tropics

description: In tropical and subtropical rainforests, vegetative fungal rhizomorphs from the Marasmiineae are routinely used as construction material in bird nests. Because rhizomorphs seldom produce mushrooms within nests, the fungal species involved remain largely unknown. In turn, this limitation has prevented us from resolving broader questions such as whether specific fungal species are selected by birds for different functional roles (i.e., attachment, or parasite control). To fill some of these gaps, we collected 74 rhizomorph-containing bird nests from the Neo- and Afrotropics and used nuc rDNA internal transcribed spacer ITS1-5.8S-ITS2 (ITS) sequences to discriminate between rhizomorph-forming species. In total we recovered 25 Marasmiineae species used by birds in nest construction, none of which were shared between the Neotropics and the Afrotropics. We also collected Marasmiineae basidiomes in the vicinity of nests and used ITS sequences to match these sporulating morphs with nest rhizomorphs for nine species. Basidiomes from an additional five species were found fruiting from rhizomorphs incorporated within bird nests. Finally, an additional six species were putatively identified based on publicly available sequence data. Rhizomorphs of five species were found to be utilized almost exclusively as lining material in nests. Lining material comes in direct contact with nestlings and is hypothesized to play a role in parasite control. Rhizomorphs from 10 species were used to attach and anchor nests to substrates; we matched six of those to fruiting litter trap-forming species collected in the understory. Litter traps hold large quantities of fallen litter material, suggesting that birds may preferentially use rhizomorphs that are adapted to bearing heavy loads for nest attachment. Finally, we describe two species of <i>Marasmius—M. neocrinis-equi</i>, sp. nov., and <i>M. nidus-avis</i>, sp. nov.—that are commonly found associated with bird nests and show that rhizomorph production is common across the genus.
DOI: 10.6084/m9.figshare.21316217
title: Additional file 1 of Transcriptome profiling of lung immune responses potentially related to acute respiratory distress syndrome in forest musk deer

description: Additional file 1.
DOI: 10.6084/m9.figshare.7164248.v1
title: Additional file 2: of UBN1/2 of HIRA complex is responsible for recognition and deposition of H3.3 at cis-regulatory elements of genes in mouse ES cells

description: Table S3. Primers used for genome editing. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.17125820.v1
title: Additional file 7 of YTHDC1-mediated VPS25 regulates cell cycle by targeting JAK-STAT signaling in human glioma cells

description: Additional file 7: Table S1. The mRNAs expression between NC and siVPS25.
DOI: 10.6084/m9.figshare.20267649.v1
title: Additional file 4 of Transplantation of bacteriophages from ulcerative colitis patients shifts the gut bacteriome and exacerbates the severity of DSS colitis

description: Additional file 4: Supplementary Table S6. VLP scaffolds shared between the VLP inoculums and HMA-mice post VLP gavage. Scaffolds shared between the healthy VLP inoculum samples and mice given healthy VLPs (tab 1). Scaffolds shared between the UC VLP inoculum samples and mice given UC VLPs (tab 2). Related to Fig. 5.
DOI: 10.6084/m9.figshare.7164350
title: Additional file 11: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

description: Table S5. Elements relate to hormone and stress in the promotor of CRFs predicted by PlantCARE. (XLS 37 kb)
DOI: 10.6084/m9.figshare.17125826.v1
title: Additional file 8 of YTHDC1-mediated VPS25 regulates cell cycle by targeting JAK-STAT signaling in human glioma cells

description: Additional file 8: Table S2. Top KEGG enrichment for the down-expressed mRNAs.
DOI: 10.6084/m9.figshare.7164341.v1
title: Additional file 10: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

description: Table S4. Elements relate to hormone and stress in the promotor of CRFs predicted by PLACE.Table S5. Elements relate to hormone and stress in the promotor of CRFs predicted by PlantCARE. (XLS 39 kb)
DOI: 10.6084/m9.figshare.7164356
title: MOESM1 of Optimization of CRISPR/Cas9 genome editing in cotton by improved sgRNA expression

description: Additional file 1. List of primers used in this study.
DOI: 10.6084/m9.figshare.7164356.v1
title: MOESM1 of Optimization of CRISPR/Cas9 genome editing in cotton by improved sgRNA expression

description: Additional file 1. List of primers used in this study.
DOI: 10.6084/m9.figshare.7164350.v1
title: Additional file 11: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

description: Table S5. Elements relate to hormone and stress in the promotor of CRFs predicted by PlantCARE. (XLS 37 kb)
DOI: 10.6084/m9.figshare.7164383
title: Additional file 1: of Novel mutations in TPM2 and PIEZO2 are responsible for distal arthrogryposis (DA) 2B and mild DA in two Chinese families

description: Table S1. Primer used in this study (XLS 10 kb)
DOI: 10.6084/m9.figshare.20267643
title: Additional file 2 of Transplantation of bacteriophages from ulcerative colitis patients shifts the gut bacteriome and exacerbates the severity of DSS colitis

description: Additional file 2: Supplementary Table S1. VLP scaffolds and bacterial phyla and genera in pooled healthy and UC inoculums. Healthy VLP and UC VLP inoculum scaffolds and annotations (tab 1), bacterial phyla relative abundance (tab 2), bacterial genera relative abundance (tab 3). Related to Fig. 2.
DOI: 10.6084/m9.figshare.7164413.v1
title: Additional file 3: of Novel mutations in TPM2 and PIEZO2 are responsible for distal arthrogryposis (DA) 2B and mild DA in two Chinese families

description: Table S2. Two-point linkage analysis using 3 genetic markers in the DA2B family (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7164413
title: Additional file 3: of Novel mutations in TPM2 and PIEZO2 are responsible for distal arthrogryposis (DA) 2B and mild DA in two Chinese families

description: Table S2. Two-point linkage analysis using 3 genetic markers in the DA2B family (XLSX 9 kb)
DOI: 10.6084/m9.figshare.17125934.v1
title: Additional file 2 of Review of social networks of professionals in healthcare settings—where are we and what else is needed?

description: Appendix 10.
DOI: 10.6084/m9.figshare.17125937.v1
title: Additional file 3 of Review of social networks of professionals in healthcare settings—where are we and what else is needed?

description: Appendix 11 citation matrix.
DOI: 10.6084/m9.figshare.7164518.v1
title: Additional file 11: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

description: Table S5. GO classification of differentially expressed genes. (XLSX 892 kb)
DOI: 10.6084/m9.figshare.19219185.v1
title: Additional file 14 of Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort.

description: Additional file 14: Table S4. Identified TGG genes in 26 different Brassicaceae species. (a) Number of myrosinase gene homologs in 26 Brassicaceae species. (b) Homologous sequence names of myrosinase genes in 26 Brassicaceae species.
DOI: 10.6084/m9.figshare.19219194.v1
title: Additional file 15 of Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort.

description: Additional file 15: Table S5. Homologous sequences of AOP, GSL-OH, CYP79, CYP81F, CYP83, MAM and IPMS genes in 26 Brassicaceae species.
DOI: 10.6084/m9.figshare.19219206.v1
title: Additional file 17 of Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort.

description: Additional file 17: Table S7. Raw data of Ka/Ks ratio calculation results. The ratio was coloured to show the variation tendency. Source genes are from I. indigotica, and query genes from other Brassicaceae species. Eight processes were divided according to the gene functions in glucosinolate metabolic pathways. For subgroup division, CYP79 and CYP83 are thought to be key enzymes in GSL biosynthesis. GGP, SUR and UGT74B are shared with both aliphatic and indole GSL biosynthesis processes, named “common genes”. Different members of GST and ST5 are linked to different GSL formation, and were grouped together. Atypical myrosinases include BGLU28, BGLU30, PEN2 and PYK10, contrast to typical myrosinase TGGs. For side-chain modification, FMO, AOP and GSL-OH take their parts in aliphatic GSL modification, while CYP81F and IGMT modify indole ring in the nature.
DOI: 10.6084/m9.figshare.17125880.v1
title: Additional file 4 of Development and characterization of efficient xylose utilization strains of Zymomonas mobilis

description: Additional file 4: Table S5. List of all the significantly differentially expressed genes of different strains comparison in different sugar media.
DOI: 10.6084/m9.figshare.17125877.v1
title: Additional file 3 of Development and characterization of efficient xylose utilization strains of Zymomonas mobilis

description: Additional file 3: Table S4. List of all the significantly differentially expressed genes in the three strains in response to the different sugar media.
DOI: 10.6084/m9.figshare.21744204.v1
title: Carbon storage and understory plant diversity in boreal Larix gmelinii–Carex schmidtii forested wetlands: A comparison of harvest, fire and draining disturbance

description: ABSTRACT Background: Forested wetlands are an important factor in carbon (C) sequestration. In this study, we compared the short-term effects (5 years) of three harvest intensities and two wildfire severities, and the mid-term effects (25 years) of four groundwater table depth (WTD) drainage for forestry on eco-system C storage and understory vegetation structures in Daxing’anling, northeast of China. Results: We found that: Low intensity harvest slightly enhanced ecosystem C storage, whereas moderate- and high-intensity harvest led to significant reductions (33.2-41.6%) in comparison with the control natural forested wetlands stand (274.54 t C·ha -1), and light and heavy burn caused the ecosystem C storage sig-nificant decreases by 27.8% and 45.2%. As for the drainage for forestry, the ecosystem C storage was higher at the low WTD (316.78 t C·ha -1), and diminished significantly by 24.1-28.1% with the increasing WTD on the forested wetland plantation transect. Compared with the control and high intensity harvest stands (8.28 t ha -1 yr -1, 5.08 t C·ha -1 yr -1 and 6.48 t ha -1 yr -1, 3.52 t C·ha -1 yr -1), significantly higher NPP (net primary productivity, defined by the biomass difference of two measurements) (69.1-83.2%) and annual C sequestration (52.0-78.7%) were observed in the low- and moderate-intensity harvest stands. Significant increases by 48.6% and decreases by 31.5% in NPP or by 52.9% in annual C sequestration were in light and heavy burn stands, respectively. In contrast, the NPP and annual C sequestration (3. 67-10. 34 t ha -1 yr -1 and 1. 59-4. 87 t C·ha -1 yr -1) showed a significant in-creasing trend with increasing WTD, respectively. The understory species diversity indices were generally lower in the harvest and burned stands than the control natural forested wetlands and more pioneer tree species regeneration occurred after the disturbances. Conclusion: Therefore, it seems that low intensity harvest and wildfire could sustain the ecosystem C sink and drainage for forestry is an effect way to restore C sequestration for this forested wetland type.
DOI: 10.6084/m9.figshare.7164359.v1
title: Additional file 1: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

description: Table S1. Primers used for qRT-PCR. (XLS 47 kb)
DOI: 10.6084/m9.figshare.7164572
title: Additional file 15: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

description: Table S7. Down-regulated and up-regulated genes in different pathways. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.7164572.v1
title: Additional file 15: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

description: Table S7. Down-regulated and up-regulated genes in different pathways. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.7164596.v1
title: Additional file 2: of Comparative analysis of rodent and small mammal viromes to better understand the wildlife origin of emerging infectious diseases

description: Table S14. The reads of each viral family related to province and animal species. (XLSX 159 kb)
DOI: 10.6084/m9.figshare.7164593
title: Additional file 1: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

description: Table S1. Primers used in this research. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.20267883.v1
title: Additional file 2 of Mapping the viruses belonging to the order Bunyavirales in China

description: Additional file 2. The dataset for CCHFV records in China used for BRT models.
DOI: 10.6084/m9.figshare.20267643.v1
title: Additional file 2 of Transplantation of bacteriophages from ulcerative colitis patients shifts the gut bacteriome and exacerbates the severity of DSS colitis

description: Additional file 2: Supplementary Table S1. VLP scaffolds and bacterial phyla and genera in pooled healthy and UC inoculums. Healthy VLP and UC VLP inoculum scaffolds and annotations (tab 1), bacterial phyla relative abundance (tab 2), bacterial genera relative abundance (tab 3). Related to Fig. 2.
DOI: 10.6084/m9.figshare.7164611.v1
title: Additional file 2: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

description: Table S2. Summary of sequencing data for each sample. Valid data were obtained after removing adaptor sequences and low-quality reads (Reads with more than 5% unidentified bases or more than 20% low-quality bases). Q20 (%), ratio of reads with quality more than Q20. Q30 (%), ratio of reads with quality more than Q30. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.20267646
title: Additional file 3 of Transplantation of bacteriophages from ulcerative colitis patients shifts the gut bacteriome and exacerbates the severity of DSS colitis

description: Additional file 3: Supplementary Table S5. Differentially abundant bacterial species between healthy-HMA and UC-HMA mice. Related to Fig. 3.
DOI: 10.15468/dl.jbakgo
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Simulium medusaeforme Pomeroy, 1920",
 "Country is Lesotho"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096130-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-48819
title: Snapshots, 10 1/2 months, Southern California, 1932

description: 9 photographs of an infant, Southern California, 1932. "Subject: snapshots, 10 1/2 months; Client: Eleanor Carter; Classifications: H-babies; Original print order; Two dozen; Re-order: 1#1; Size: 8x10; Finish: gl[ossy]; Year: 1932; Job: 4-3-32" -- on envelope front. "2.50" -- on envelope back.
DOI: 10.15468/dl.uchakv
title: Occurrence Download

description: A dataset containing 1370488 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cricetidae",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 1370488 records from 236 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096108-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-110320
title: Gas meter & man reading meter, Los Angeles, Calif., 1941

description: 4 photographs of a gas meter and a uniformed man reading it and writing down the result, Los Angeles, California, 1941 January 30.