cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.67863
title: Unpublished description by M.R. James of Cambridge, University Library, MS Gg.6.28 (poems, in French)

description: Between 1926 and 1930, M.R. James was employed by Cambridge University Library to prepare descriptions of its medieval manuscripts, with a view to superseding the information provided by the five-volume catalogue published between 1856 and 1867. In all, James prepared descriptions of over 1,200 of the Library's manuscripts. However, the unfinished (and often hurried) state of his work, together with the difficulty of deciphering his handwriting, meant that plans to publish his work in the years immediately after his death in 1936 had to be abandoned. Between 2002 and 2011, transcriptions of James's notes were compiled piecemeal by University Library staff, with a view to making them more widely available, but also to aid the preservation of the originals (now accessioned into the University Archives as UA ULIB 7/3/74). This transcription was prepared by Dr Martin Blake. For further information, see: James Freeman, 'Unpublished descriptions of western medieval manuscripts at Cambridge University Library', Transactions of the Cambridge Bibliographical Society (2020); James Freeman, 'M.R. James's descriptions', Cambridge University Library Special Collections Subject Guide (https://www.lib.cam.ac.uk/collections/departments/manuscripts-university-archives/subject-guides/medieval-manuscripts-2/mr); Jayne Ringrose, 'The legacy of M.R. James in Cambridge University Library', in The legacy of M.R. James: Papers from the 1995 Cambidge Symposium, ed. by Lynda Dennison (Donington: Shaun Tyas, 2001), pp. 23-36.
DOI: 10.17863/cam.67864
title: Unpublished description by M.R. James of Cambridge, University Library, MS Gg.6.42 (Alexander Nequam, Florilegium; Geoffrey of Monmouth, Prophetia Merlini; Peter of Blois, De commendatione uini; and other texts)

description: Between 1926 and 1930, M.R. James was employed by Cambridge University Library to prepare descriptions of its medieval manuscripts, with a view to superseding the information provided by the five-volume catalogue published between 1856 and 1867. In all, James prepared descriptions of over 1,200 of the Library's manuscripts. However, the unfinished (and often hurried) state of his work, together with the difficulty of deciphering his handwriting, meant that plans to publish his work in the years immediately after his death in 1936 had to be abandoned. Between 2002 and 2011, transcriptions of James's notes were compiled piecemeal by University Library staff, with a view to making them more widely available, but also to aid the preservation of the originals (now accessioned into the University Archives as UA ULIB 7/3/74). This transcription was prepared by Dr Martin Blake. For further information, see: James Freeman, 'Unpublished descriptions of western medieval manuscripts at Cambridge University Library', Transactions of the Cambridge Bibliographical Society (2020); James Freeman, 'M.R. James's descriptions', Cambridge University Library Special Collections Subject Guide (https://www.lib.cam.ac.uk/collections/departments/manuscripts-university-archives/subject-guides/medieval-manuscripts-2/mr); Jayne Ringrose, 'The legacy of M.R. James in Cambridge University Library', in The legacy of M.R. James: Papers from the 1995 Cambidge Symposium, ed. by Lynda Dennison (Donington: Shaun Tyas, 2001), pp. 23-36.
DOI: 10.17863/cam.67865
title: Unpublished description by M.R. James of Cambridge, University Library, MS Gg.6.45 (Bible)

description: Between 1926 and 1930, M.R. James was employed by Cambridge University Library to prepare descriptions of its medieval manuscripts, with a view to superseding the information provided by the five-volume catalogue published between 1856 and 1867. In all, James prepared descriptions of over 1,200 of the Library's manuscripts. However, the unfinished (and often hurried) state of his work, together with the difficulty of deciphering his handwriting, meant that plans to publish his work in the years immediately after his death in 1936 had to be abandoned. Between 2002 and 2011, transcriptions of James's notes were compiled piecemeal by University Library staff, with a view to making them more widely available, but also to aid the preservation of the originals (now accessioned into the University Archives as UA ULIB 7/3/74). This transcription was prepared by Dr Martin Blake. For further information, see: James Freeman, 'Unpublished descriptions of western medieval manuscripts at Cambridge University Library', Transactions of the Cambridge Bibliographical Society (2020); James Freeman, 'M.R. James's descriptions', Cambridge University Library Special Collections Subject Guide (https://www.lib.cam.ac.uk/collections/departments/manuscripts-university-archives/subject-guides/medieval-manuscripts-2/mr); Jayne Ringrose, 'The legacy of M.R. James in Cambridge University Library', in The legacy of M.R. James: Papers from the 1995 Cambidge Symposium, ed. by Lynda Dennison (Donington: Shaun Tyas, 2001), pp. 23-36.
DOI: 10.5281/zenodo.5150823
title: Absolute units in Arabidopsis clock models up to U2020.3

description: The dataset presents mathematical models of the gene regulatory network of the circadian clock, in the plant <em>Arabidopsis thaliana.</em> The work is published in Urquiza-Garcia and Millar, <strong>Testing the inferred transcription rates of a dynamic, gene network model in absolute units</strong>, In Silico Plants, 2021. Starting from the P2011 model, this project corrects theoretical issues (EC steady state binding assumption) to form an intermediate model (published as U2019.1), rescales parameters to match absolute RNA levels from the TiMet WP1a RNA dataset of Flis et al. 2015 in U2019.2, then reoptimises globally to match RNA timeseries, period and amplitude constraints to produce the U2019.3 model. This project then replaces regulation of the PRRs with repression by later-expressed genes (instead of activation by earlier ones, as in P2011/P2012/U2019) in the U2019.1 model, to create the U2020.1 model, then also rescales to match the RNA levels in the U2020.2 model, and performs a global reoptimisation as above to form U2020.3. The input data files, the computational environment for model development (a Docker image in the 'Reproducibility Toolset' assay) and the relevant model files are included here, as published in Urquiza and Millar, In Silico Plants, 2021. The biorXiv preprint version of the publication is linked inside the archive structure. The DOI for the publication was not yet available but is now: 10.1093/insilicoplants/diab022. This version replaces 10.5281/zenodo.5150794, as the model files' metadata include clearer, updated descriptions. There are no other changes.
description: The dataset is structured as a Research Object with an internal ISA hierarchy, which is automatically generated by the Snapshot function of the FAIRDOMHub.org repository. The Research Object is a .ZIP file with the ISA hierarchy reflected in its subfolder structure. There is metadata at multiple levels of the hierarchy, including in the datafile records. The model files are in Antimony and SBML formats. The KF2014 model in SBML format was excluded from the "snapshot" due to an unresolved technical error in FAIRDOMHub.org, and will be included in a later version of this deposit if possible. The file is publicly available from the live resource by searching for "F2014".
description: {"references": ["Urquiza-Garc\u00eda, U., & Millar, A. J. (2021). Testing the inferred transcription rates of a dynamic, gene network model in absolute units. biorXiv, Cold Spring Harbor Laboratory. https://doi.org/10.1101/2021.03.18.436071", "Urquiza-Garc\u00eda, U., & Millar, A. J. (2021). Testing the inferred transcription rates of a dynamic, gene network model in absolute units. in silico Plants. http://dx.doi.org/10.1093/insilicoplants/diab022"]}
DOI: 10.17863/cam.67866
title: Unpublished description by M.R. James of Cambridge, University Library, MS Hh.1.1 (Missal, Use of Rome)

description: Between 1926 and 1930, M.R. James was employed by Cambridge University Library to prepare descriptions of its medieval manuscripts, with a view to superseding the information provided by the five-volume catalogue published between 1856 and 1867. In all, James prepared descriptions of over 1,200 of the Library's manuscripts. However, the unfinished (and often hurried) state of his work, together with the difficulty of deciphering his handwriting, meant that plans to publish his work in the years immediately after his death in 1936 had to be abandoned. Between 2002 and 2011, transcriptions of James's notes were compiled piecemeal by University Library staff, with a view to making them more widely available, but also to aid the preservation of the originals (now accessioned into the University Archives as UA ULIB 7/3/74). This transcription was prepared by Dr Martin Blake. For further information, see: James Freeman, 'Unpublished descriptions of western medieval manuscripts at Cambridge University Library', Transactions of the Cambridge Bibliographical Society (2020); James Freeman, 'M.R. James's descriptions', Cambridge University Library Special Collections Subject Guide (https://www.lib.cam.ac.uk/collections/departments/manuscripts-university-archives/subject-guides/medieval-manuscripts-2/mr); Jayne Ringrose, 'The legacy of M.R. James in Cambridge University Library', in The legacy of M.R. James: Papers from the 1995 Cambidge Symposium, ed. by Lynda Dennison (Donington: Shaun Tyas, 2001), pp. 23-36.
DOI: 10.17863/cam.67860
title: Unpublished description by M.R. James of Cambridge, University Library, MS Gg.6.24 (Petrus Comestor, Historia scholastica)

description: Between 1926 and 1930, M.R. James was employed by Cambridge University Library to prepare descriptions of its medieval manuscripts, with a view to superseding the information provided by the five-volume catalogue published between 1856 and 1867. In all, James prepared descriptions of over 1,200 of the Library's manuscripts. However, the unfinished (and often hurried) state of his work, together with the difficulty of deciphering his handwriting, meant that plans to publish his work in the years immediately after his death in 1936 had to be abandoned. Between 2002 and 2011, transcriptions of James's notes were compiled piecemeal by University Library staff, with a view to making them more widely available, but also to aid the preservation of the originals (now accessioned into the University Archives as UA ULIB 7/3/74). This transcription was prepared by Dr Martin Blake. For further information, see: James Freeman, 'Unpublished descriptions of western medieval manuscripts at Cambridge University Library', Transactions of the Cambridge Bibliographical Society (2020); James Freeman, 'M.R. James's descriptions', Cambridge University Library Special Collections Subject Guide (https://www.lib.cam.ac.uk/collections/departments/manuscripts-university-archives/subject-guides/medieval-manuscripts-2/mr); Jayne Ringrose, 'The legacy of M.R. James in Cambridge University Library', in The legacy of M.R. James: Papers from the 1995 Cambidge Symposium, ed. by Lynda Dennison (Donington: Shaun Tyas, 2001), pp. 23-36.
DOI: 10.17863/cam.67861
title: Unpublished description by M.R. James of Cambridge, University Library, MS Gg.6.25 (Book of Hours, Use of Sarum)

description: Between 1926 and 1930, M.R. James was employed by Cambridge University Library to prepare descriptions of its medieval manuscripts, with a view to superseding the information provided by the five-volume catalogue published between 1856 and 1867. In all, James prepared descriptions of over 1,200 of the Library's manuscripts. However, the unfinished (and often hurried) state of his work, together with the difficulty of deciphering his handwriting, meant that plans to publish his work in the years immediately after his death in 1936 had to be abandoned. Between 2002 and 2011, transcriptions of James's notes were compiled piecemeal by University Library staff, with a view to making them more widely available, but also to aid the preservation of the originals (now accessioned into the University Archives as UA ULIB 7/3/74). This transcription was prepared by Dr Martin Blake. For further information, see: James Freeman, 'Unpublished descriptions of western medieval manuscripts at Cambridge University Library', Transactions of the Cambridge Bibliographical Society (2020); James Freeman, 'M.R. James's descriptions', Cambridge University Library Special Collections Subject Guide (https://www.lib.cam.ac.uk/collections/departments/manuscripts-university-archives/subject-guides/medieval-manuscripts-2/mr); Jayne Ringrose, 'The legacy of M.R. James in Cambridge University Library', in The legacy of M.R. James: Papers from the 1995 Cambidge Symposium, ed. by Lynda Dennison (Donington: Shaun Tyas, 2001), pp. 23-36.
DOI: 10.17863/cam.67867
title: Unpublished description by M.R. James of Cambridge, University Library, MS Hh.1.2 (Daniel, with gloss)

description: Between 1926 and 1930, M.R. James was employed by Cambridge University Library to prepare descriptions of its medieval manuscripts, with a view to superseding the information provided by the five-volume catalogue published between 1856 and 1867. In all, James prepared descriptions of over 1,200 of the Library's manuscripts. However, the unfinished (and often hurried) state of his work, together with the difficulty of deciphering his handwriting, meant that plans to publish his work in the years immediately after his death in 1936 had to be abandoned. Between 2002 and 2011, transcriptions of James's notes were compiled piecemeal by University Library staff, with a view to making them more widely available, but also to aid the preservation of the originals (now accessioned into the University Archives as UA ULIB 7/3/74). This transcription was prepared by Dr Martin Blake. For further information, see: James Freeman, 'Unpublished descriptions of western medieval manuscripts at Cambridge University Library', Transactions of the Cambridge Bibliographical Society (2020); James Freeman, 'M.R. James's descriptions', Cambridge University Library Special Collections Subject Guide (https://www.lib.cam.ac.uk/collections/departments/manuscripts-university-archives/subject-guides/medieval-manuscripts-2/mr); Jayne Ringrose, 'The legacy of M.R. James in Cambridge University Library', in The legacy of M.R. James: Papers from the 1995 Cambidge Symposium, ed. by Lynda Dennison (Donington: Shaun Tyas, 2001), pp. 23-36.
DOI: 10.17863/cam.67862
title: Unpublished description by M.R. James of Cambridge, University Library, MS Gg.6.26 (sermons; Gesta Romanorum)

description: Between 1926 and 1930, M.R. James was employed by Cambridge University Library to prepare descriptions of its medieval manuscripts, with a view to superseding the information provided by the five-volume catalogue published between 1856 and 1867. In all, James prepared descriptions of over 1,200 of the Library's manuscripts. However, the unfinished (and often hurried) state of his work, together with the difficulty of deciphering his handwriting, meant that plans to publish his work in the years immediately after his death in 1936 had to be abandoned. Between 2002 and 2011, transcriptions of James's notes were compiled piecemeal by University Library staff, with a view to making them more widely available, but also to aid the preservation of the originals (now accessioned into the University Archives as UA ULIB 7/3/74). This transcription was prepared by Dr Martin Blake. For further information, see: James Freeman, 'Unpublished descriptions of western medieval manuscripts at Cambridge University Library', Transactions of the Cambridge Bibliographical Society (2020); James Freeman, 'M.R. James's descriptions', Cambridge University Library Special Collections Subject Guide (https://www.lib.cam.ac.uk/collections/departments/manuscripts-university-archives/subject-guides/medieval-manuscripts-2/mr); Jayne Ringrose, 'The legacy of M.R. James in Cambridge University Library', in The legacy of M.R. James: Papers from the 1995 Cambidge Symposium, ed. by Lynda Dennison (Donington: Shaun Tyas, 2001), pp. 23-36.
DOI: 10.17863/cam.67871
title: Unpublished description by M.R. James of Cambridge, University Library, MS Hh.1.5 (grammatical texts)

description: Between 1926 and 1930, M.R. James was employed by Cambridge University Library to prepare descriptions of its medieval manuscripts, with a view to superseding the information provided by the five-volume catalogue published between 1856 and 1867. In all, James prepared descriptions of over 1,200 of the Library's manuscripts. However, the unfinished (and often hurried) state of his work, together with the difficulty of deciphering his handwriting, meant that plans to publish his work in the years immediately after his death in 1936 had to be abandoned. Between 2002 and 2011, transcriptions of James's notes were compiled piecemeal by University Library staff, with a view to making them more widely available, but also to aid the preservation of the originals (now accessioned into the University Archives as UA ULIB 7/3/74). This transcription was prepared by Dr Martin Blake. For further information, see: James Freeman, 'Unpublished descriptions of western medieval manuscripts at Cambridge University Library', Transactions of the Cambridge Bibliographical Society (2020); James Freeman, 'M.R. James's descriptions', Cambridge University Library Special Collections Subject Guide (https://www.lib.cam.ac.uk/collections/departments/manuscripts-university-archives/subject-guides/medieval-manuscripts-2/mr); Jayne Ringrose, 'The legacy of M.R. James in Cambridge University Library', in The legacy of M.R. James: Papers from the 1995 Cambidge Symposium, ed. by Lynda Dennison (Donington: Shaun Tyas, 2001), pp. 23-36.
DOI: 10.17863/cam.67875
title: Unpublished description by M.R. James of Cambridge, University Library, MS Hh.1.9 (Johannes Tritheim, Chronicon Hirsaugiensis; Cornelius Tacitus, Germania; Baptista Mantuanus, Ecloga; and other texts)

description: Between 1926 and 1930, M.R. James was employed by Cambridge University Library to prepare descriptions of its medieval manuscripts, with a view to superseding the information provided by the five-volume catalogue published between 1856 and 1867. In all, James prepared descriptions of over 1,200 of the Library's manuscripts. However, the unfinished (and often hurried) state of his work, together with the difficulty of deciphering his handwriting, meant that plans to publish his work in the years immediately after his death in 1936 had to be abandoned. Between 2002 and 2011, transcriptions of James's notes were compiled piecemeal by University Library staff, with a view to making them more widely available, but also to aid the preservation of the originals (now accessioned into the University Archives as UA ULIB 7/3/74). This transcription was prepared by Dr Martin Blake. For further information, see: James Freeman, 'Unpublished descriptions of western medieval manuscripts at Cambridge University Library', Transactions of the Cambridge Bibliographical Society (2020); James Freeman, 'M.R. James's descriptions', Cambridge University Library Special Collections Subject Guide (https://www.lib.cam.ac.uk/collections/departments/manuscripts-university-archives/subject-guides/medieval-manuscripts-2/mr); Jayne Ringrose, 'The legacy of M.R. James in Cambridge University Library', in The legacy of M.R. James: Papers from the 1995 Cambidge Symposium, ed. by Lynda Dennison (Donington: Shaun Tyas, 2001), pp. 23-36.
DOI: 10.17863/cam.67869
title: Unpublished description by M.R. James of Cambridge, University Library, MS Dd.3.58 (Chronicle Roll Harold to Edward I, continued to Henry VI)

description: Between 1926 and 1930, M.R. James was employed by Cambridge University Library to prepare descriptions of its medieval manuscripts, with a view to superseding the information provided by the five-volume catalogue published between 1856 and 1867. In all, James prepared descriptions of over 1,200 of the Library's manuscripts. However, the unfinished (and often hurried) state of his work, together with the difficulty of deciphering his handwriting, meant that plans to publish his work in the years immediately after his death in 1936 had to be abandoned. Between 2002 and 2011, transcriptions of James's notes were compiled piecemeal by University Library staff, with a view to making them more widely available, but also to aid the preservation of the originals (now accessioned into the University Archives as UA ULIB 7/3/74). This transcription was prepared by Dr Martin Blake. For further information, see: James Freeman, 'Unpublished descriptions of western medieval manuscripts at Cambridge University Library', Transactions of the Cambridge Bibliographical Society (2020); James Freeman, 'M.R. James's descriptions', Cambridge University Library Special Collections Subject Guide (https://www.lib.cam.ac.uk/collections/departments/manuscripts-university-archives/subject-guides/medieval-manuscripts-2/mr); Jayne Ringrose, 'The legacy of M.R. James in Cambridge University Library', in The legacy of M.R. James: Papers from the 1995 Cambidge Symposium, ed. by Lynda Dennison (Donington: Shaun Tyas, 2001), pp. 23-36.
DOI: 10.17863/cam.67872
title: Unpublished description by M.R. James of Cambridge, University Library, MS Hh.1.6 (Thomas Aquinas, Commentary of Aristotle's Ethica)

description: Between 1926 and 1930, M.R. James was employed by Cambridge University Library to prepare descriptions of its medieval manuscripts, with a view to superseding the information provided by the five-volume catalogue published between 1856 and 1867. In all, James prepared descriptions of over 1,200 of the Library's manuscripts. However, the unfinished (and often hurried) state of his work, together with the difficulty of deciphering his handwriting, meant that plans to publish his work in the years immediately after his death in 1936 had to be abandoned. Between 2002 and 2011, transcriptions of James's notes were compiled piecemeal by University Library staff, with a view to making them more widely available, but also to aid the preservation of the originals (now accessioned into the University Archives as UA ULIB 7/3/74). This transcription was prepared by Dr Martin Blake. For further information, see: James Freeman, 'Unpublished descriptions of western medieval manuscripts at Cambridge University Library', Transactions of the Cambridge Bibliographical Society (2020); James Freeman, 'M.R. James's descriptions', Cambridge University Library Special Collections Subject Guide (https://www.lib.cam.ac.uk/collections/departments/manuscripts-university-archives/subject-guides/medieval-manuscripts-2/mr); Jayne Ringrose, 'The legacy of M.R. James in Cambridge University Library', in The legacy of M.R. James: Papers from the 1995 Cambidge Symposium, ed. by Lynda Dennison (Donington: Shaun Tyas, 2001), pp. 23-36.