cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29389787.v1
title: Supplementary Material for: First European Experience of Shape-Sensing Robotic-assisted bronchoscopy: Learning Curve Analysis

description: Background and Objectives: Shape-sensing robotic-assisted bronchoscopy (ssRAB) is an emerging approach in Europe to diagnose peripheral pulmonary nodules (PPN). There is limited data on how quickly this new technology can be learned.
Methods: This study presents a post-hoc analysis of learning curves from a single-centre prospective study in which PPN were diagnosed by ssRAB combined with standalone (non-integrated) mobile cone-beam computed tomography (mCBCT) by two experienced proceduralists both nascent to ssRAB and mCBCT. All sections of procedure times, number of mCBCT spins, and tool-in-lesion (TIL) were assessed by cumulative sum (CUSUM) analysis.
Results: A total of 45 patients were included in the study with biopsies attempted in 40 subjects (n=17 proceduralist 1, n=23 proceduralist 2), with a median (IQR) nodule size of 20.0 (17.0, 24.0) mm. Median procedure time improved for both proceduralists after case 6. Navigation time showed no learning pattern, while there were different learning patterns for parts of the procedure for both proceduralists. Proceduralist 1 had statistically significantly shorter procedure times compared to proceduralist 2, mostly due to more biopsies taken from proceduralist 2. Both proceduralists were able to obtain TIL confirmed by mCBCT from the first case and demonstrated proficiency after 8 cases.
Conclusion: Competence in ssRAB can be achieved quickly, and procedure times decrease after a few cases. However, as learning curves vary between proceduralists, a sufficient number of cases should be considered to achieve ssRAB proficiency. Not all learning parameters, such as anesthetic or endoscopic staff learning, can be represented in statistical analyses.
DOI: 10.6084/m9.figshare.29389790
title: Supplementary Material for: Long-term outcome of repeat resection versus radiofrequency ablation for intrahepatic recurrence after curative resection of hepatocellular carcinoma initially within BCLC 0-A stages: A multicenter study

description: Background: Hepatocellular carcinoma (HCC) is the most common primary liver cancer with an extremely high recurrence rate. Due to the absence of definitive treatment guidelines for recurrent HCC, this study assessed the effectiveness of repeat resection (RR) versus percutaneous radiofrequency ablation (RFA) in patients initially diagnosed with BCLC stage 0-A primary HCC who developed no more than three recurrent tumors, each ≤3 cm in size, after curative resection.
Methods: This study retrospectively analyzed patients diagnosed with recurrent HCC between January 1, 2010, and May 30, 2022, across five centers, who underwent either RR or RFA. All patients met the eligibility criteria for both treatments. 
Results: This study included 464 patients (224 in the RR group and 240 in the RFA group). Both groups were predominantly male (87.1% vs 82.9%) and aged ≤60 years (72.8% vs 69.9%). The groups showed differences in histological differentiation of initial tumors and size of recurrent tumors, but these baseline characteristics were balanced after propensity score matching (PSM).The median overall survival after retreatment (OS) was 100.3 months in the RR group and 67.4 months in the RFA group (HR 0.612, 95% CI [0.414–0.904], P=0.013). The median recurrence-free survival after retreatment(RFS) was 34.6 months in the RR group and 16.2 months in the RFA group (HR 0.574, 95% CI [0.447–0.737], P&lt;0.001). Both RFS and OS were significantly better in the RR group than in the RFA group. 
Conclusion: In patients with primary HCC classified as BCLC stage 0-A who have undergone curative resection, RR is superior to RFA in terms of both RFS and OS when the recurrent tumors are ≤3 in number and ≤3 cm in size.
DOI: 10.6084/m9.figshare.29389790.v1
title: Supplementary Material for: Long-term outcome of repeat resection versus radiofrequency ablation for intrahepatic recurrence after curative resection of hepatocellular carcinoma initially within BCLC 0-A stages: A multicenter study

description: Background: Hepatocellular carcinoma (HCC) is the most common primary liver cancer with an extremely high recurrence rate. Due to the absence of definitive treatment guidelines for recurrent HCC, this study assessed the effectiveness of repeat resection (RR) versus percutaneous radiofrequency ablation (RFA) in patients initially diagnosed with BCLC stage 0-A primary HCC who developed no more than three recurrent tumors, each ≤3 cm in size, after curative resection.
Methods: This study retrospectively analyzed patients diagnosed with recurrent HCC between January 1, 2010, and May 30, 2022, across five centers, who underwent either RR or RFA. All patients met the eligibility criteria for both treatments. 
Results: This study included 464 patients (224 in the RR group and 240 in the RFA group). Both groups were predominantly male (87.1% vs 82.9%) and aged ≤60 years (72.8% vs 69.9%). The groups showed differences in histological differentiation of initial tumors and size of recurrent tumors, but these baseline characteristics were balanced after propensity score matching (PSM).The median overall survival after retreatment (OS) was 100.3 months in the RR group and 67.4 months in the RFA group (HR 0.612, 95% CI [0.414–0.904], P=0.013). The median recurrence-free survival after retreatment(RFS) was 34.6 months in the RR group and 16.2 months in the RFA group (HR 0.574, 95% CI [0.447–0.737], P&lt;0.001). Both RFS and OS were significantly better in the RR group than in the RFA group. 
Conclusion: In patients with primary HCC classified as BCLC stage 0-A who have undergone curative resection, RR is superior to RFA in terms of both RFS and OS when the recurrent tumors are ≤3 in number and ≤3 cm in size.
DOI: 10.6084/m9.figshare.29389793
title: Supplementary Material for: Clinicopathologic Characteristics of Intraglomerular Malignancy in Kidney Biopsies

description: Introduction: Intraglomerular malignancy (IGM) is a rare finding with current data limited to case reports and small, often postmortem, series. This study aims to characterize the clinicopathologic features of kidney biopsy cases with IGM.

Methods: Renal biopsy cases diagnosed with IGM from January 2000 to June 2023 at Cedars-Sinai Medical Center were retrospectively reviewed. Demographic, clinical characteristics, and pathologic data were collected, and cases were divided into hematologic (HEME) versus non-hematologic (non-HEME) malignancy.

Results: We identified 9 patients with IGM. 5 were hematolymphoid in origin and 4 were from metastatic solid tumor (2 carcinomas from the lung, 1 neuroendocrine tumor of likely lung origin, and 1 from the head and neck). All patients presented with proteinuria and hematuria, and 89% had renal dysfunction. The median serum creatinine was 2.9 (IQR 1.7-5.7) mg/dL. All non-HEME patients had an established malignant diagnosis at the time of kidney biopsy, whereas all HEME cases were initially or concurrently diagnosed at the time of biopsy. Two of the non-HEME biopsies showed extracapillary hypercellularity due to malignant cells, a feature not seen in HEME cases. Of the 8 patients with follow-up available, 7 (88%) died within a median of 69 (IQR 4-161) days. 

Discussion/Conclusion: IGM is a rare presentation of disseminated malignancy, often indicating advanced disease with poor prognosis. Nephropathologists should be aware of IGM as a histologic mimicker of endocapillary hypercellularity or cellular crescent formation. Similarly, the provision of complete clinical history is critical for accurate biopsy assessment and to avoid this diagnostic pitfall. Given its high mortality rate and the short interval between tissue diagnosis and death, the identification of IGM should prompt urgent medical attention.
DOI: 10.6084/m9.figshare.29389793.v1
title: Supplementary Material for: Clinicopathologic Characteristics of Intraglomerular Malignancy in Kidney Biopsies

description: Introduction: Intraglomerular malignancy (IGM) is a rare finding with current data limited to case reports and small, often postmortem, series. This study aims to characterize the clinicopathologic features of kidney biopsy cases with IGM.

Methods: Renal biopsy cases diagnosed with IGM from January 2000 to June 2023 at Cedars-Sinai Medical Center were retrospectively reviewed. Demographic, clinical characteristics, and pathologic data were collected, and cases were divided into hematologic (HEME) versus non-hematologic (non-HEME) malignancy.

Results: We identified 9 patients with IGM. 5 were hematolymphoid in origin and 4 were from metastatic solid tumor (2 carcinomas from the lung, 1 neuroendocrine tumor of likely lung origin, and 1 from the head and neck). All patients presented with proteinuria and hematuria, and 89% had renal dysfunction. The median serum creatinine was 2.9 (IQR 1.7-5.7) mg/dL. All non-HEME patients had an established malignant diagnosis at the time of kidney biopsy, whereas all HEME cases were initially or concurrently diagnosed at the time of biopsy. Two of the non-HEME biopsies showed extracapillary hypercellularity due to malignant cells, a feature not seen in HEME cases. Of the 8 patients with follow-up available, 7 (88%) died within a median of 69 (IQR 4-161) days. 

Discussion/Conclusion: IGM is a rare presentation of disseminated malignancy, often indicating advanced disease with poor prognosis. Nephropathologists should be aware of IGM as a histologic mimicker of endocapillary hypercellularity or cellular crescent formation. Similarly, the provision of complete clinical history is critical for accurate biopsy assessment and to avoid this diagnostic pitfall. Given its high mortality rate and the short interval between tissue diagnosis and death, the identification of IGM should prompt urgent medical attention.
DOI: 10.21227/yh75-qt67
title: "MRU DATAVERSE"

description: " Event Title DataVerse 2025: Where Data Fuels Innovation Tagline Analyze. Integrate. Innovate.Core ThemeDataVerse 2025 is a national-level interdisciplinary competition centered on \"Unlocking the Power of Data: Fueling Innovation Across Disciplines with IEEE DataPort.\" Participants will leverage open-access datasets to engineer solutions for real-world challenges spanning computer science, electronics, mechanical systems, and beyond.Competition StructureRegistration & Dataset SelectionTeams (2-4 members) register and select an IEEE DataPort dataset.Duration: July 10\u201319, 2025.Problem Definition & Abstract SubmissionParticipants identify a challenge aligned with their dataset.Submit abstracts outlining problem statements and technical approaches.Deadline: July 25, 2025.Solution DevelopmentTeams analyze data, apply techniques (statistical modeling, ML, visualization), and develop sustainable solutions.Mandatory use of IEEE DataPort datasets with clear citation.      NOTE : 10 Teams will be shortlisted for the final presentation round.Final EvaluationShortlisted teams present solutions live to an expert jury via Google Meet.Date: August 6, 2025.Technical Focus AreasData Science & Engineering: Predictive maintenance, energy optimization, intelligent automation.Methodologies: Machine learning, signal analysis, system modeling, data visualization.Evaluation Criteria:Relevance of problem statementEffective dataset utilizationTechnical rigor and innovationSolution scalability and documentation quality  Key RequirementsAll phases conducted online; no physical attendance.Final submissions include:Technical report\/slide deck (problem statement, solution, visuals)GitHub repository (code quality assessed)Certificates awarded only to teams completing all phases.  Call to ActionEngineering students nationwide are invited to pioneer data-driven innovation. Transform raw data into impactful solutions while developing cross-disciplinary expertise. Registration opens July 10, 2025.  "
DOI: 10.5281/zenodo.15727385
title: Köln-Sülz Mariannen-Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.15727386
title: Köln-Sülz Mariannen-Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.15727256
title: The haplotype-resolved complete Tetraodon nigroviridis genome provides new insights into the evolution of the most compact vertebrate genome

description: Genome sizes across vertebrates are remarkably variable ranging by a factor of ~250 from ~350Mb to over 92Gb. Pufferfish genomes (e.g., Tetraodon nigroviridis and Takifugu rubripes) are notable for their compact size, with T. nigroviridis possessing the smallest known vertebrate genome. Yet they all maintain a relatively stable number of protein-coding genes. Until recently, the lack of high-quality, complete genome assemblies has hindered detailed investigations into the mechanisms of genome size evolution. Here, we present two haplotype-resolved, complete telomere-to-telomere (T2T) genome assemblies of T. nigroviridis. The two haplotype-resolved T2T assemblies each containing 21 gapless chromosomes with total lengths of 342,798,327 bp and 344,013,623 bp, respectively. It harbors the canonical vertebrate telomeric repeat and a conserved 118-bp centromeric satellite unit shared across all chromosomes. Our analyses reveal that the compact genome of T. nigroviridis is achieved through the repression of transposable elements and the dramatic reduction of intergenic regions and intron sizes, while protein-coding regions remain highly conserved. As the genome shrinks, its genome GC content increases significantly, especially in the small chromosomes. Comparative analyses highlight extraordinary synteny conservation across vertebrates, underscoring the evolutionary stability of synteny units in vertebrate genomes despite a more than 250-fold range in genome size. In particular, chromosome 19 showed extreme synteny conservation throughout teleost evolution. This work not only enhances our understanding of genome size evolution but also serves as a valuable resource for future evolutionary and comparative genomic studies.
DOI: 10.5281/zenodo.15727257
title: The haplotype-resolved complete Tetraodon nigroviridis genome provides new insights into the evolution of the most compact vertebrate genome

description: Genome sizes across vertebrates are remarkably variable ranging by a factor of ~250 from ~350Mb to over 92Gb. Pufferfish genomes (e.g., Tetraodon nigroviridis and Takifugu rubripes) are notable for their compact size, with T. nigroviridis possessing the smallest known vertebrate genome. Yet they all maintain a relatively stable number of protein-coding genes. Until recently, the lack of high-quality, complete genome assemblies has hindered detailed investigations into the mechanisms of genome size evolution. Here, we present two haplotype-resolved, complete telomere-to-telomere (T2T) genome assemblies of T. nigroviridis. The two haplotype-resolved T2T assemblies each containing 21 gapless chromosomes with total lengths of 342,798,327 bp and 344,013,623 bp, respectively. It harbors the canonical vertebrate telomeric repeat and a conserved 118-bp centromeric satellite unit shared across all chromosomes. Our analyses reveal that the compact genome of T. nigroviridis is achieved through the repression of transposable elements and the dramatic reduction of intergenic regions and intron sizes, while protein-coding regions remain highly conserved. As the genome shrinks, its genome GC content increases significantly, especially in the small chromosomes. Comparative analyses highlight extraordinary synteny conservation across vertebrates, underscoring the evolutionary stability of synteny units in vertebrate genomes despite a more than 250-fold range in genome size. In particular, chromosome 19 showed extreme synteny conservation throughout teleost evolution. This work not only enhances our understanding of genome size evolution but also serves as a valuable resource for future evolutionary and comparative genomic studies.
DOI: 10.15468/dl.gp2g9x
title: Occurrence Download

description: A dataset containing 2577 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "TaxonKey is Porifera"
 ]
}

 The dataset includes 2577 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066846-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25326/jqk1-q582
title: Atmospheric simulation chamber study: 1,3,5-trimethylbenzene+NOx+SO2 + NO2 - Aerosol study - particle formation - 2006-06-13
DOI: 10.25326/k9n0-wz52
title: Atmospheric simulation chamber study: alpha-pinene + OH - Aerosol study - particle formation - 2012-06-01
DOI: 10.25326/9ygg-f906
title: Atmospheric simulation chamber study: alpha-pinene+beta-caryophyllene+limonene + OH - Aerosol study - particle formation - 2012-12-06
DOI: 10.25326/e9ra-wt34
title: Atmospheric simulation chamber study: 1,3,5-trimethylbenzene+NOx+SO2 + NO2 - Aerosol study - particle formation - 2006-06-26
DOI: 10.25326/64sb-jj79
title: Atmospheric simulation chamber study: 1,3,5-trimethylbenzene+NOx+SO2 + NO2 - Aerosol study - particle formation - 2006-07-17
DOI: 10.25326/be4f-7v49
title: Atmospheric simulation chamber study: beta-caryophyllene + OH - Aerosol study - particle formation - 2012-06-06
DOI: 10.25326/a8ft-5691
title: Atmospheric simulation chamber study: limonene + OH - Aerosol study - particle formation - 2013-05-14
DOI: 10.25326/c4x2-qw18
title: Atmospheric simulation chamber study: 1,3,5-trimethylbenzene+propene+NOx + NO2 - Aerosol study - particle formation - 2003-03-27
DOI: 10.5281/zenodo.15727393
title: Köln-Sülz Nicolai-Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.15727394
title: Köln-Sülz Nicolai-Apotheke (ca. 1924/1947)

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.25326/6ykh-0194
title: Atmospheric simulation chamber study: 1,3,5-trimethylbenzene+propene+NOx + NO2 - Aerosol study - particle formation - 2003-05-02
DOI: 10.25326/nf4b-qe18
title: Atmospheric simulation chamber study: 1,3,5-trimethylbenzene+propene+NOx + NO2 - Aerosol study - particle formation - 2003-11-03
DOI: 10.25326/pvwp-xb16
title: Atmospheric simulation chamber study: 1,3,5-trimethylbenzene+propene+NOx + NO2 - Aerosol study - particle formation - 2005-02-14
DOI: 10.25326/t6qr-ff89
title: Atmospheric simulation chamber study: 1,3,5-trimethylbenzene+propene+NOx + NO2 - Aerosol study - particle formation - 2004-02-11
DOI: 10.25326/0qfp-cz50
title: Atmospheric simulation chamber study: alpha-pinene+NOx + NO2 - Aerosol study - particle formation - 2005-10-14
DOI: 10.25326/rnjd-0670
title: Atmospheric simulation chamber study: alpha-pinene+NOx + NO2 - Aerosol study - particle formation - 2006-09-29
DOI: 10.25326/w16p-rs61
title: Atmospheric simulation chamber study: alpha-pinene+NOx + NO2 - Aerosol study - particle formation - 2005-09-26
DOI: 10.25326/cyje-b964
title: Atmospheric simulation chamber study: 1,3,5-trimethylbenzene+propene+NOx + NO2 - Aerosol study - particle formation - 2003-04-28
DOI: 10.25326/revq-9544
title: Atmospheric simulation chamber study: alpha-pinene+NOx + NO2 - Aerosol study - particle formation - 2004-11-25
DOI: 10.25326/f4k3-ve59
title: Atmospheric simulation chamber study: 1,3,5-trimethylbenzene+propene+NOx + NO2 - Aerosol study - particle formation - 2003-06-02