cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15412160
title: Geographical database of Iberian peatland and swob records

description: Recent efforts have compiled distribution data on Iberian Peninsula peatlands, however, the criteria used to characterise these ecosystems have often been derived from regions where peatlands are more extensive and typically occur under wetter climatic conditions. As a result, many peat-accumulating wetlands in this region were overlooked. Identifying and improving the distribution mapping of peatlands is crucial for their conservation and management. Here, we present an updated geographical dataset of peatlands and swobs —i.e. wetlands with a potential to form peat— of the Iberian Peninsula.  Peatland and swob records in Portugal and Spain were compiled through an extensive literature review, also incorporating data from recently published Iberian peatland maps. Additionally, field surveys conducted between 2011–2015, 2018–2021, and 2023–2024 provided additional records. A total of 445 records were included in the database, representing the current knowledge on the distribution of Iberian peatlands and swobs. This dataset allows the identification of occurrence hotspots, highlights underrepresented regions, and provides a foundation for future research and conservation planning.
DOI: 10.5281/zenodo.14809474
title: SPT-NRTL: A physics-guided machine learning model to predict thermodynamically consistent activity coefficients

description: The data repository contains the following:



Database of 100 Mio. sets of NRTL Parameters predicted using SPT-NRTL

Jupyter notebook to get the corresponding NRTL parameters for given SMILES code combination

Lookup table to match the SMILES codes with the corresponding hashs used for the file names


The work is part of the following publication: https://doi.org/10.1016/j.fluid.2023.113731
DOI: 10.5281/zenodo.14809475
title: SPT-NRTL: A physics-guided machine learning model to predict thermodynamically consistent activity coefficients

description: The data repository contains the following:



Database of 100 Mio. sets of NRTL Parameters predicted using SPT-NRTL

Jupyter notebook to get the corresponding NRTL parameters for given SMILES code combination

Lookup table to match the SMILES codes with the corresponding hashs used for the file names


The work is part of the following publication: https://doi.org/10.1016/j.fluid.2023.113731
DOI: 10.57841/casdc.0005494
title: 一种转录调控网络促进了番茄果肉中的花青素合成
DOI: 10.18112/openneuro.ds006188.v1.0.0
title: PAFIN: PennLINC AFfective INstability- ASLPrep Derivatives
DOI: 10.5281/zenodo.14753578
title: Femur vesseltree (blood-let mouse)

description: This repository is one part of three zenodo entries belonging to the same project, dealing with the vessel tree of femur bones.

Complete femur bones were extracted, stained, and imaged on light-sheet fluorescence microscope in small tiles as described in the accompanying publication (REF).

The individual tiles were stitched in Fiji using the BigStitcher and build the foundation of all analysis results shown here. Individual tiles can be obtained upon request (too large file size for a single zenodo entry).

Each femur was imaged on four different channels:ch0: Megakaryocytes (Anti-GPIX labeled with Alexa750)ch1: Blood vessels (CD31-high, Anti-CD31 labeled with Alexa647)ch2: Blood vessels (CD31-low, Anti-CD105 labeled with  Alexa546)ch3: (residual) Autofluorescence, captured at 488 nm

Three samples are provided:

1) Young naive mouse: VK-AA501 (10.5281/zenodo.14752863)

2) Aged mouse: VK-AA760 (10.5281/zenodo.14753479)

3) Blood-let mouse: VK-AA764 (10.5281/zenodo.14753578)
DOI: 10.15468/dl.jrqqg8
title: Occurrence Download

description: A dataset containing 4736 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Triticum durum Desf."
 ]
}

 The dataset includes 4736 records from 160 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030813-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15450405
title: costus_amazonicus_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.15450406
title: costus_amazonicus_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.15450283
title: Errors of approximate analytical solutions for pressurized toroidal shells

description: This dataset is presented for the paper "Curved pipes subjected to mechanochemical corrosion under pressure: Analytical and numerical estimates of the lifetime". 

AUTHORS: A. Ilyin, Y. Pronina. Saint-Petersburg State University

Corresponding E-MAIL: y.pronina@spbu.ru

A linearly elastic toroidal shell with mean toroidal radius R, inner radius ri and outer radius ro loaded with internal pi and external po pressures (pi ≥ 0 and po ≥ 0) is considered. The dataset contains the values of the relative error in circumferential stresses calculated by the approximate analytical "thin-shell" (eq.(8) of this paper) and "thick-shell" (eq.(9)-(10) of this paper) solutions compared to Finite element modeling (FEM) results, for the inner and outer surfaces at the torus intrados. For the "thin-shell" solution the graphical representation of the current dataset is presented in Figure 7(a) for the inner surface and in Figure 7(b) for the outer surface of the toroidal shell. For the "thick-shell" solution the graphical representation of the current dataset is presented in Figure 8(a) and Figure 8(b) for the inner and outer surfaces, correspondingly.

The values of the error are calculated using the following formula:

        Error = (S^{an} - S^{FEM})/S^{FEM} * 100%where:S^{an} -- circumferential stress obtained by the approximate analytical solution (eq.(8) - eq.(10)),S^{FEM} -- circumferential stress obtained by the Finite element modeling (FEM).

NOTATIONS:

ro -- outer radius of the toroidal shell;ri -- inner radius of the toroidal shell;R -- mean radius of the toroidal shell;h -- relative thickness of the toroidal shell ( h = (ro - ri) / 2 );Error_Inner_Thin -- relative error of the "thin-shell” solution (eq. 8) compared to the FEM for the inner surface (Figure 7 (a)), in percent;Error_Outer_Thin -- relative error of the "thin-shell” solution (eq. 8) compared to the FEM for the outer surface (Figure 7 (b)), in percent;Error_Inner_Thick -- relative error of the modified Kornecki solution (eq. 10) compared to the FEM for the inner surface (Figure 8 (a)), in percent;Error_Outer_Thick -- relative error of the modified Kornecki solution (eq. 9) compared to the FEM for the outer surface (Figure 8 (b)), in percent.
DOI: 10.5281/zenodo.15450284
title: Errors of approximate analytical solutions for pressurized toroidal shells

description: This dataset is presented for the paper "Curved pipes subjected to mechanochemical corrosion under pressure: Analytical and numerical estimates of the lifetime". 

AUTHORS: A. Ilyin, Y. Pronina. Saint-Petersburg State University

Corresponding E-MAIL: y.pronina@spbu.ru

A linearly elastic toroidal shell with mean toroidal radius R, inner radius ri and outer radius ro loaded with internal pi and external po pressures (pi ≥ 0 and po ≥ 0) is considered. The dataset contains the values of the relative error in circumferential stresses calculated by the approximate analytical "thin-shell" (eq.(8) of this paper) and "thick-shell" (eq.(9)-(10) of this paper) solutions compared to Finite element modeling (FEM) results, for the inner and outer surfaces at the torus intrados. For the "thin-shell" solution the graphical representation of the current dataset is presented in Figure 7(a) for the inner surface and in Figure 7(b) for the outer surface of the toroidal shell. For the "thick-shell" solution the graphical representation of the current dataset is presented in Figure 8(a) and Figure 8(b) for the inner and outer surfaces, correspondingly.

The values of the error are calculated using the following formula:

        Error = (S^{an} - S^{FEM})/S^{FEM} * 100%where:S^{an} -- circumferential stress obtained by the approximate analytical solution (eq.(8) - eq.(10)),S^{FEM} -- circumferential stress obtained by the Finite element modeling (FEM).

NOTATIONS:

ro -- outer radius of the toroidal shell;ri -- inner radius of the toroidal shell;R -- mean radius of the toroidal shell;h -- relative thickness of the toroidal shell ( h = (ro - ri) / 2 );Error_Inner_Thin -- relative error of the "thin-shell” solution (eq. 8) compared to the FEM for the inner surface (Figure 7 (a)), in percent;Error_Outer_Thin -- relative error of the "thin-shell” solution (eq. 8) compared to the FEM for the outer surface (Figure 7 (b)), in percent;Error_Inner_Thick -- relative error of the modified Kornecki solution (eq. 10) compared to the FEM for the inner surface (Figure 8 (a)), in percent;Error_Outer_Thick -- relative error of the modified Kornecki solution (eq. 9) compared to the FEM for the outer surface (Figure 8 (b)), in percent.
DOI: 10.7266/n7-qzw5-kc72
title: Short-lived radioisotope (SLRad) data collected aboard R/V Weatherbird II cruises WB-0812 and WB-1012 and R/V Pelican cruise PE12-22 in the northern Gulf of Mexico from 2012-04-09 to 2012-10-18
DOI: 10.15468/dl.3m5bbc
title: Occurrence Download

description: A dataset containing 46458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ardea purpurea Linnaeus, 1766",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 46458 records from 275 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003291-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29093099
title: Minimizing Data Loss in Bluetooth Low Energy (BLE) - Experiments data

description: Bluetooth Low Energy (BLE) is a preferred wireless protocol for Industrial Internet of Things (IIoT) due to its low energy consumption and wide adoption. However, when BLE is accessed via the Web Bluetooth API, it faces challenges such as packet loss, limited control over connection parameters, and restricted throughput.This thesis aims to evaluate the reliability of BLE communication using the Web Bluetooth API and to propose application-layer solutions to reduce packet loss, improve latency, and maintain stable long-term connections in industrial monitoring contexts.An empirical experimental approach was used, involving three sequential experiments that tested different BLE configurations. These included the use of parallel transmission modules, varying data transmission intervals, and timestamp-based packet handling. Performance metrics such as packet loss and jitter were analyzed.Results showed that using two BLE modules in parallel reduced packet loss to zero and minimized jitter. A transmission interval of 2 Hz provided the best trade-off between performance and stability across all packet sizes. Application layer strategies improved connection reliability without requiring hardware level changes.The study shows that BLE communication over the Web Bluetooth API can be stabilized through application-level techniques, enabling real-time and reliable IIoT data transmission with now hardware modification needed.
DOI: 10.6084/m9.figshare.29093099.v1
title: Minimizing Data Loss in Bluetooth Low Energy (BLE) - Experiments data

description: Bluetooth Low Energy (BLE) is a preferred wireless protocol for Industrial Internet of Things (IIoT) due to its low energy consumption and wide adoption. However, when BLE is accessed via the Web Bluetooth API, it faces challenges such as packet loss, limited control over connection parameters, and restricted throughput.This thesis aims to evaluate the reliability of BLE communication using the Web Bluetooth API and to propose application-layer solutions to reduce packet loss, improve latency, and maintain stable long-term connections in industrial monitoring contexts.An empirical experimental approach was used, involving three sequential experiments that tested different BLE configurations. These included the use of parallel transmission modules, varying data transmission intervals, and timestamp-based packet handling. Performance metrics such as packet loss and jitter were analyzed.Results showed that using two BLE modules in parallel reduced packet loss to zero and minimized jitter. A transmission interval of 2 Hz provided the best trade-off between performance and stability across all packet sizes. Application layer strategies improved connection reliability without requiring hardware level changes.The study shows that BLE communication over the Web Bluetooth API can be stabilized through application-level techniques, enabling real-time and reliable IIoT data transmission with now hardware modification needed.
DOI: 10.6084/m9.figshare.29093099.v2
title: Minimizing Data Loss in Bluetooth Low Energy (BLE) - Experiments data

description: Bluetooth Low Energy (BLE) is a preferred wireless protocol for Industrial Internet of Things (IIoT) due to its low energy consumption and wide adoption. However, when BLE is accessed via the Web Bluetooth API, it faces challenges such as packet loss, limited control over connection parameters, and restricted throughput.This thesis aims to evaluate the reliability of BLE communication using the Web Bluetooth API and to propose application-layer solutions to reduce packet loss, improve latency, and maintain stable long-term connections in industrial monitoring contexts.An empirical experimental approach was used, involving three sequential experiments that tested different BLE configurations. These included the use of parallel transmission modules, varying data transmission intervals, and timestamp-based packet handling. Performance metrics such as packet loss and jitter were analyzed.Results showed that using two BLE modules in parallel reduced packet loss to zero and minimized jitter. A transmission interval of 2 Hz provided the best trade-off between performance and stability across all packet sizes. Application layer strategies improved connection reliability without requiring hardware level changes.The study shows that BLE communication over the Web Bluetooth API can be stabilized through application-level techniques, enabling real-time and reliable IIoT data transmission with now hardware modification needed.
DOI: 10.15468/dl.xdjmyc
title: Occurrence Download

description: A dataset containing 6799 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Quercus variabilis Blume)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6799 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003292-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yky758
title: Occurrence Download

description: A dataset containing 30672 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ardeola ralloides (Scopoli, 1769)",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 30672 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003293-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.48hhvu
title: Occurrence Download

description: A dataset containing 1446 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ostorhinchus aureus (Lacepède, 1802)"
 ]
}

 The dataset includes 1446 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003294-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sx2gms
title: Occurrence Download

description: A dataset containing 11394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Quercus velutina Lam.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11394 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003296-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15450311
title: Starship giant transposons dominate plastic genomic regions in a fungal plant pathogen and drive virulence evolution

description: Starships form a recently discovered superfamily of giant transposons in Pezizomycotina fungi, implicated in mediating horizontal transfer of diverse cargo genes between fungal genomes. Their elusive nature has long obscured their significance, and their impact on genome evolution remains poorly understood. Here, we reveal a surprising abundance and diversity of Starships in the phytopathogenic fungus Verticillium dahliae. Remarkably, Starships dominate the plastic genomic compartments involved in host colonization, are enriched in virulence-associated genes, and exhibit genetic and epigenetic characteristics associated with adaptive genome evolution. We further uncover extensive horizontal transfer of Starships between Verticillium species and, strikingly, from distantly related Fusarium fungi. Finally, we demonstrate how Starship activity facilitated the de novo formation of a novel virulence gene. Our findings illuminate the profound influence of Starship dynamics on fungal genome evolution and the development of virulence.
DOI: 10.5281/zenodo.15450312
title: Starship giant transposons dominate plastic genomic regions in a fungal plant pathogen and drive virulence evolution

description: Starships form a recently discovered superfamily of giant transposons in Pezizomycotina fungi, implicated in mediating horizontal transfer of diverse cargo genes between fungal genomes. Their elusive nature has long obscured their significance, and their impact on genome evolution remains poorly understood. Here, we reveal a surprising abundance and diversity of Starships in the phytopathogenic fungus Verticillium dahliae. Remarkably, Starships dominate the plastic genomic compartments involved in host colonization, are enriched in virulence-associated genes, and exhibit genetic and epigenetic characteristics associated with adaptive genome evolution. We further uncover extensive horizontal transfer of Starships between Verticillium species and, strikingly, from distantly related Fusarium fungi. Finally, we demonstrate how Starship activity facilitated the de novo formation of a novel virulence gene. Our findings illuminate the profound influence of Starship dynamics on fungal genome evolution and the development of virulence.
DOI: 10.5281/zenodo.15450416
title: bucephala_clangula_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.15450417
title: bucephala_clangula_zanfona_1.fasta.gz
DOI: 10.7266/n7pv6hb6
title: Biomarkers and PAHs concentrations in caged and wild oysters, Grande Terre, Breton Sound, Barataria Bay, Sister Lake, 2010-2011.
DOI: 10.15468/dl.r6ef35
title: Occurrence Download

description: A dataset containing 3209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Benin",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Monotes kerstingii Gilg"
 ]
}

 The dataset includes 3209 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003300-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7mfb4y
title: Occurrence Download

description: A dataset containing 5413 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Randia aculeata L.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5413 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003299-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jq6c7t
title: Occurrence Download

description: A dataset containing 2441 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viscum articulatum Burm.fil."
 ]
}

 The dataset includes 2441 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003298-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqwh6a
title: Occurrence Download

description: A dataset containing 2102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zanthoxylum scandens Blume"
 ]
}

 The dataset includes 2102 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003302-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11849459
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.33cxk2
title: Occurrence Download

description: A dataset containing 771 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zanthoxylum rhetsa (Roxb.) DC."
 ]
}

 The dataset includes 771 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003301-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vhyxgr
title: Occurrence Download

description: A dataset containing 1765 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ostorhinchus cyanosoma (Bleeker, 1853)"
 ]
}

 The dataset includes 1765 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003304-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ynv26f
title: Occurrence Download

description: A dataset containing 255 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amphibalanus subalbidus (Henry, 1973)"
 ]
}

 The dataset includes 255 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003305-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uww2xd
title: Occurrence Download

description: A dataset containing 3209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Benin",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Monotes kerstingii Gilg"
 ]
}

 The dataset includes 3209 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003306-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.