cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.6nb35
title: Data from: Temperature-dependent body size effects determine population responses to climate warming

description: Current understanding of animal population responses to rising
 temperatures is based on the assumption that biological rates such as
 metabolism, which governs fundamental ecological processes, scale
 independently with body size and temperature, despite empirical evidence
 for interactive effects. Here we investigate the consequences of
 interactive temperature- and size-scaling of vital rates for the dynamics
 of populations experiencing warming using a stage-structured
 consumer-resource model. We show that interactive scaling alters
 population and stage-specific responses to rising temperatures, such that
 warming can induce shifts in population regulation and stage-structure,
 influence community structure and govern population responses to
 mortality. Analyzing experimental data for 20 fish species, we found
 size-temperature interactions in intraspecific scaling of metabolic rate
 to be common. Given the evidence for size-temperature interactions and the
 ubiquity of size structure in animal populations, we argue that accounting
 for size-specific temperature effects is pivotal for understanding how
 warming affects animal populations and communities.
description: Lindmark.et.al.2017.empirical_data_fishbaseData on oxygen consumption (proxy for metabolic rate) in relation to body mass and temperature, in teleost fish. Originally collated from Fishbase (http://www.fishbase.org/search.php), using selection criteria specified in the article.
DOI: 10.5061/dryad.fq15r87
title: Data from: Host investment into symbiosis varies among genotypes of the legume Acmispon strigosus, but host sanctions are uniform

description: Efficient host control predicts the extirpation of ineffective symbionts,
 but they are nonetheless widespread in nature. We tested three hypotheses
 for the maintenance of symbiotic variation in rhizobia that associate with
 a native legume: 1) partner mismatch between host and symbiont, such that
 symbiont effectiveness varies with host genotype, 2) resource satiation,
 whereby extrinsic sources of nutrients relax host control, and 3)
 variation in host control among host genotypes. We inoculated Acmispon
 strigosus from six populations with three Bradyrhizobium strains that vary
 in symbiotic effectiveness on sympatric hosts. We measured proxies of host
 and symbiont fitness in single- and co-inoculations under fertilization
 treatments of zero added nitrogen and near-growth-saturating nitrogen. We
 examined two components of host control: ‘host investment’ into nodule
 size during single- and co-inoculations, and ‘host sanctions’ against less
 effective strains during co-inoculations. The Bradyrhizobium strains
 displayed conserved growth effects on hosts, and host control did not
 decline under experimental fertilization. Host sanctions were robust in
 all hosts, but host lines from different populations varied significantly
 in measures of host investment in both single- and co-inoculation
 experiments. Variation in host investment could promote variation in
 symbiotic effectiveness and prevent the extinction of ineffective
 Bradyrhizobium from natural populations.
description: Wendlandt_2018_New_Phytologist_Raw_DataRaw data collected from individual plants (per-plant raw data) and individual nodules (per-nodule raw data) corresponding to Wendlandt et al 2018 (New Phytologist). Per-plant data include measures of leaf number at time of inoculation, shoot and root mass at time of harvest, total number and dry mass of root nodules, and nitrogen isotopic data from leaf tissue. Per-nodule data include nodule area, number of rhizobial cells per nodule (for nodules from plants inoculated with a single strain), and number of rhizobial colonies identified as particular strains (for nodules from plants co-inoculated with three strains).
DOI: 10.5061/dryad.2bg877b
title: Data from: Porous poly-l-lactide-co-ε-caprolactone scaffold: a novel biomaterial for vaginal tissue engineering

description: The surgical reconstruction of functional neovagina is challenging and
 susceptible to complications. Therefore, developing tissue engineering
 based treatment methods for vaginal defects is important. Our aim was to
 develop and test a novel supercritical carbon dioxide foamed
 poly-l-lactide-co-ε-caprolactone (scPLCL) scaffold for vaginal
 reconstruction. The scaffolds were manufactured and characterized for
 porosity (65±4%), pore size (350±150µm) and elastic modulus (2.8±0.4MPa).
 Vaginal epithelial (EC) and stromal cells (SC) were isolated, expanded,
 and characterized with flow cytometry. Finally, cells were cultured with
 scPLCL scaffolds in separate and/or co-cultures. Their attachment,
 viability, proliferation and phenotype were analyzed. Both cell types
 strongly expressed cell surface markers CD44, CD73, and CD166. Strong
 expression of CD326 was detected with ECs and CD90 and CD105 with SCs.
 Both ECs and SCs attached and maintained viability on scPLCL. Further,
 scPLCL supported the proliferation of especially ECs, which also
 maintained epithelial phenotype (cytokeratin expression) during 14d
 assessment period. Interestingly, ECs expressed uroplakin (UP) Ia, UPIb,
 and UPIII markers, further, UPIa and UPIII expression was significantly
 higher on ECs cultured on scPLCL than on cell culture plastic. In
 conclusion, the scPLCL is potential scaffold for vaginal tissue
 engineering and the results of this study further illustrates the
 excellent biocompatibility of PLCL.
description: Sartonevaetal_Cell
 proliferation_CyQuant_dataSartonevaetal_CyQuant_data.xlsxSartonevaetal_QPCR_dataSartonevaetal_QPCR data.xlsxPLCL_tensiletest_dataPLCL tensiletest_data.xlsxPLCL_Interconnectivity_dataPLCL scaffold interconnectivity data
DOI: 10.5061/dryad.r161gf4
title: Data from: Floral community predicts pollinators' color preference: implications for Batesian floral mimicry

description: Animals that rely on nectar are expected to display floral trait
 preferences correlating to the signals of nectar source flowers. Batesian
 mimicry evolves to exploit these pre-existing signal-receiver
 relationships, attracting pollinators through an adaptive resemblance to
 specific co-occurring rewarding species. The nectar-feeding long-proboscid
 flies of South Africa are pollinators for several deceptive orchid species
 that are putatively Batesian mimics. We tested whether flies’ measured
 color preference varied among communities providing different
 nectar-source diets, which would indicate the necessary signal-receiver
 conditions for the evolution of advergent Batesian mimicry. We introduced
 artificial rewardless flowers into flowering communities that supported
 divergent nectar-diets in resident flies and inferred floral trait
 preferences of a long-proboscid fly species (Prosoeca ganglbaueri) from
 visitation behavior to these artificial flowers. The experiment showed
 that the preference of flies for white versus pink was strongly predicted
 by the colors of flowers most commonly visited by flies at a site.
 Furthermore, generalization in preference was positively correlated with
 the variance in nectar-community hue, i.e. flies showed more generalized
 preference in more spectrally diverse flower communities. The floral tube
 length of local nectar sources also influenced how readily the flies
 probed the artificial flowers during attempted foraging. These results
 support the hypothesis that nectarless orchids pollinated by P.
 ganglbaueri experience selection for traits that exploit site-specific
 mutualistic relationships between fly pollinators and their local floral
 communities.
description: Spectral and behavioral
 dataAverage spectra for
 flowers in the study. Behavioral response data to interview
 bouquets.data_archive_Whitehead_etal.xlsx
DOI: 10.5061/dryad.8kc1n09
title: Data from: Periphytic algae decouple fungal activity from leaf litter decomposition via negative priming

description: 1. Well-documented in terrestrial settings, priming effects describe
 stimulated heterotrophic microbial activity and decomposition of
 recalcitrant carbon by additions of labile carbon. In aquatic settings,
 algae produce labile exudates which may elicit priming during organic
 matter decomposition, yet the directions and mechanisms of aquatic priming
 effects remain poorly tested. 2. We tested algal-induced priming during
 decomposition of two leaf species of contrasting recalcitrance,
 Liriodendron tulipifera and Quercus nigra, in experimental streams under
 light or dark conditions. We measured litter-associated algal, bacterial,
 and fungal biomass and activity, stoichiometry, and litter decomposition
 rates over 43 days. 3. Light increased algal biomass and production rates
 and increased bacterial abundance 141-733% and fungal production rates
 20-157%. Incubations with a photosynthesis inhibitor established that
 algal activity directly stimulated fungal production rates in the
 short-term. 4. Algal-stimulated fungal production rates on both leaf
 species were not coupled to long-term increases in fungal biomass accrual
 or litter decomposition rates, which were 154-157% and 164-455% greater in
 the dark, respectively. The similar patterns on fast- vs. slow-decomposing
 L. tulipifera and Q. nigra, respectively, indicated that substrate
 recalcitrance may not mediate priming strength or direction. 5. In this
 example of negative priming, periphytic algae decoupled fungal activity
 from decomposition, likely by providing labile carbon invested toward
 greater fungal growth and reproduction instead of recalcitrant carbon
 degradation. If common, algal-induced negative priming could stimulate
 heterotrophy reliant on labile carbon yet suppress decomposition of
 recalcitrant carbon, modifying energy and nutrients available to upper
 trophic levels and enhancing organic carbon storage or export in well-lit
 aquatic habitats.
description: Summary of raw data
 presented in manuscript.This Excel document
 includes the raw data for all analyses presented in the manuscript
 including algal biomass, bacterial abundance, fungal biomass, production
 rates of algae, bacteria, and fungi, microbial production responses to
 DCMU manipulations, bulk litter carbon:nitrogen and carbon:phosphorus
 contents, and leaf disk dry mass to calculate decomposition rates over
 time. Bold column headings indicate sampling date, light treatment, leaf
 species, stream/splitplot, and the response with units
 indicated.FunctEcolPrimingMS_Halvorson_DryadData.xlsx
DOI: 10.15468/dl.gmgus2
title: Occurrence Download

description: A dataset containing 402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brugmansia sanguinea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 402 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000834-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n77tfb
title: Occurrence Download

description: A dataset containing 7062 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Austria",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amanita muscaria"
 ]
}

 The dataset includes 7062 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000835-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.bn5155f
title: Data from: Functional traits and environmental conditions predict community isotopic niches and energy pathways across spatial scales

description: 1. Despite ongoing research in food web ecology and functional
 biogeography, the links between food-web structure, functional traits and
 environmental conditions across spatial scales remain poorly understood.
 Trophic niches, defined as the amount of energy and elemental space
 occupied by species and food webs, may help bridge this divide. 2. Here,
 we ask how the functional traits of species, the environmental conditions
 of habitats and the spatial scale of analysis jointly determine the
 characteristics of trophic niches. We used isotopic niches as a proxy of
 trophic niches, and conducted analyses at spatial scales ranging from
 local food webs and metacommunities to geographically distant sites. 3. We
 sampled aquatic macroinvertebrates from 104 tank bromeliads distributed
 across five sites from Central to South America, and compiled the
 macroinvertebrates’ functional traits and stable isotope values (δ15N and
 δ13C). We assessed how isotopic niches within each bromeliad were
 influenced by the functional trait composition of their associated
 invertebrates and environmental conditions (i.e., habitat size, canopy
 cover, and detrital concentration). We then evaluated whether the diet of
 dominant predators and, consequently, energy pathways within food webs,
 reflected functional and environmental changes among bromeliads across
 sites. Finally, we determined the extent to which the isotopic niches of
 macroinvertebrates within each bromeliad contributed to the metacommunity
 isotopic niches within each site, and compared these metacommunity-level
 niches over biogeographic scales. 4. At the bromeliad level, isotopic
 niches increased with the functional richness of species in the food web
 and the detrital concentration in the bromeliad. The diet of top predators
 tracked shifts in prey biomass along gradients of canopy cover and
 detrital concentration. Bromeliads that grew under heterogeneous canopy
 cover displayed less trophic redundancy and therefore combined to form
 larger metacommunity isotopic niches. Finally, the size of metacommunity
 niches depended on within-site heterogeneity in canopy cover. 5. Our
 results suggest that the trophic niches occupied by food webs can
 predictably scale from local food webs to metacommunities to biogeographic
 regions. This scaling process is determined by both the functional traits
 of species and heterogeneity in environmental conditions.
description: Study site, aquatic
 invertebrates, and stable isotope values (carbon and
 nitrogen))Dryad_invertebrate_site_data.csvEnvironmental descriptors for each tank bromeliadDryad_environmental_gradients_data.csv
DOI: 10.5061/dryad.3d2m3
title: Data from: Genetic constraints underlying human reproductive timing in a premodern Swiss village

description: The trade-off between reproductive investment in early versus late life is
 central to life-history theory. Despite abundant empirical evidence
 supporting different versions of this trade-off, the specific trade-off
 between age at first reproduction (AFR) and age at last reproduction (ALR)
 has received little attention, especially in long-lived species with a
 pronounced reproductive senescence such as humans. Using genealogical data
 for a 19th-century Swiss village, we (i) quantify natural selection acting
 on reproductive timing, (ii) estimate the underlying additive genetic
 (co)variances, and (iii) use these to predict evolutionary responses.
 Selection gradients were computed using multiple linear regression, and
 the additive genetic variance–covariance matrix was estimated using a
 restricted maximum-likelihood animal model. We found strong selection for
 both an early AFR and a late ALR, which resulted from selection for an
 earlier and longer reproductive period (RP, i.e., ALR-AFR). Furthermore,
 postponing AFR shortened RP in both sexes, but twice as much in women.
 Finally, AFR and ALR were strongly and positively genetically correlated,
 which led to a considerable reduction in the predicted responses to
 selection, or even rendered them maladaptive. These results provide
 evidence for strong genetic constraints underlying reproductive timing in
 humans, which may have contributed to the evolution of menopause.
description: Burkli_Postma_dataPhenotypic data and pruned pedigree containing all individuals whose records contribute to the estimation of quantitative genetic parameters for age at first reproduction and age at last reproduction
DOI: 10.5061/dryad.v382k
title: Data from: The evolution of sexual signal modes and associated sensor morphology in fireflies (Lampyridae, Coleoptera)

description: Animals employ different sexual signal modes (e.g. visual, acoustic,
 chemical) in different environments and behavioural contexts. If sensory
 structures are costly, then evolutionary shifts in primary signal mode
 should be associated with changes in sensor morphology. Further, sex
 differences are expected if male and female signalling behaviours differ.
 Fireflies are known for their light displays, but many species communicate
 exclusively with pheromones, including species that recently lost their
 light signals. We performed phylogenetically-controlled analyses of male
 eye and antenna size in 46 North American taxa and found that light
 signals are associated with larger eyes and shorter antennae. In addition,
 following a transition from nocturnal light displays to diurnal
 pheromones, eye size reductions occur more rapidly than antenna size
 increases. In agreement with the North American taxa, across 101 worldwide
 firefly taxa in 32 genera, we found light displays are associated with
 larger eye and smaller antenna sizes in both males and females. For those
 taxa with both male and female data, we found sex differences in eye size
 and, for diurnal species, in antenna size.
description: Male Eye and Antenna
 Morphology Worldwide data setThis file contains the
 large worldwide data set (N=106 lampyrid taxa and N=1 lycid taxon as
 outgroup) of male eye and antenna measurements (including Ohba's
 unscaled and scaled data).Morphology worldwide data set
 .xlsxMale-Female paired
 worldwide dataThe data in the table
 are the mean measurement values for eye and antenna measurements of 28
 male-female pairs of fireflies (ksh and Ohba data sets)Male-Female worldwide paired
 analysis.xlsxNorth American Male Eye
 and Antenna data setThe data in the table
 are the mean values for male eye and antenna measurements from 46 North
 American taxaData for PGLS
 analysisLog transformed male
 eye, antenna and body size (pronotum) data of North American
 fireflies.all_traits_cont.csv
DOI: 10.5061/dryad.643387c
title: Data from: Subjective cognitive decline and risk of MCI: the Mayo Clinic Study of Aging

description: Objective: We investigated different dimensions of subjective cognitive
 decline (SCD) to determine which was the best prognostic risk factor for
 incident mild cognitive impairment (MCI) among cognitively unimpaired (CU)
 participants. Methods: We included 1167 CU participants, aged 70-95 years
 from the Mayo Clinic Study of Aging based on 2 concurrent SCD scales (part
 of the Blessed memory test and the 39-item ECog, which included a
 validated 12-item derivative) and a single question assessing worry about
 cognitive decline. We evaluated multiple ways to dichotomize scores. In
 continuous models we compared average scores on 4 ECog domains and
 multi-domain (39 and 12-item) ECog scores. Cox proportional hazard models
 were used to assess the association between each measure and risk of MCI
 in models adjusted for objective memory performance, depression, anxiety,
 sex, APOEε4 carriership and medical comorbidities. Results: It was
 possible to select a substantial group of participants (14%) at increased
 risk of incident MCI based on combined baseline endorsement of any
 consistent SCD on the ECog (any item scored ≥3; HR 12-item ECog 2.17
 [1.51-3.13]) and worry (HR 1.79 [1.24-2.58]) in an adjusted model
 combining these dimensions. In continuous models, all ECog domains and the
 multi-domain scores were associated with risk of MCI with a small
 advantage for multi-domain SCD (HR 12-item ECog 2.13 [1.36-3.35] per point
 increase in average score). Information provided by the informant
 performed comparable to self-perceived SCD. Conclusion: Prognostic value
 of SCD for incident MCI improves when both consistency of SCD and
 associated worry are evaluated.
description: Distribution and
 predictive value of all self-perceived SCD and iSCD measures for incident
 MCI in the MCSATable 1: Distribution
 and predictive value of SCD scores. Table 2: Distribution and predictive
 value of iSCD scores.Supplementary material SCD in
 MCSA AHA 20180319.docx
DOI: 10.5061/dryad.9n2sm
title: Data from: Plant defences limit herbivore population growth by changing predator–prey interactions

description: Plant quality and predators are important factors affecting herbivore
 population growth, but how they interact to regulate herbivore populations
 is not well understood. We manipulated jasmonate-induced plant resistance,
 exposure to the natural predator community and herbivore density to test
 how these factors jointly and independently affect herbivore population
 growth. On low-resistance plants, the predator community was diverse and
 abundant, promoting high predator consumption rates. On high-resistance
 plants, the predator community was less diverse and abundant, resulting in
 low predator consumption rate. Plant resistance only directly regulated
 aphid population growth on predator-excluded plants. When predators were
 present, plant resistance indirectly regulated herbivore population growth
 by changing the impact of predators on the herbivorous prey. A possible
 mechanism for the interaction between plant resistance and predation is
 that methyl salicylate, a herbivore-induced plant volatile attractive to
 predators, was more strongly induced in low-resistance plants. Increased
 plant resistance reduced predator attractant lures, preventing predators
 from locating their prey. Low-resistance plants may regulate herbivore
 populations via predators by providing reliable information on prey
 availability and increasing the effectiveness of predators.
description: Data on the effects of
 plant defenses and predators on herbivoresData from manipulative
 laboratory and field experiments.Kersch-Becker et al_Proc
 B_data.xlsx
DOI: 10.5061/dryad.fn909
title: Data from: Effects of offspring and parental inbreeding on parent-offspring communication

description: There is mounting evidence that inbreeding can have complex effects on
 social interactions among inbred and outbred individuals. Here, we
 investigate effects of offspring and maternal inbreeding on
 parent-offspring communication in the burying beetle Nicrophorus
 vespilloides. We find effects of the interaction between offspring and
 maternal inbreeding on maternal behavior. Outbred females provided more
 direct care towards inbred larvae, while inbred females provided similar
 levels of direct care towards inbred and outbred larvae. Furthermore, we
 find direct and indirect effects of offspring inbreeding on offspring
 begging and maternal behavior, respectively. Inbred larvae spent less time
 begging than outbred larvae, and (outbred) females provided more direct
 care and less indirect care towards inbred larvae. Finally, we find
 effects of the interaction between offspring and maternal inbreeding on
 larval body mass. Inbred and outbred offspring grew to a similar size when
 the female was outbred, whilst inbred offspring were smaller size when the
 female was inbred. Our results suggest that outbred females provided more
 care towards inbred offspring to compensate for their poor genetic
 quality. Our study advances our understanding of inbreeding by showing
 that inbreeding can have direct effects on the behavior of inbred
 individuals and indirect effects on the behavior of outbred individuals,
 and that indirect effects on outbred individuals, in turn, may influence
 the fitness of inbred individuals.
description: Data on effects of
 offspring and parental inbreeding on parent-offspring communication in
 Nicrophorus vespilloidesMattey et
 al..csv