cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30018262.v1
title: <b>Allied male dolphins use synchronous displays to strengthen social bonds in a cooperative context (Data, R Code and Supplementary Videos)</b>

description: From fireflies to fiddler crabs and anurans to apes, males from across the animal kingdom perform synchronous displays in the mating context. Most do so in competition for mates, but few species synchronise signal production cooperatively. For example, synchrony in humans is cooperative; where interpersonal synchrony increases affiliation, cooperative ability, and group cohesion. Interestingly, multi-level alliances of male Indo-Pacific bottlenose dolphins in Shark Bay, Western Australia, also engage in cooperative synchrony. Adult males form pairs or trios to cooperatively herd single oestrus females, during which males perform elaborate synchronous displays. These displays comprise synchronous turns, leaps, and surfacing bouts around the female, but the function remains equivocal. Here, we used drone mounted video coupled with 40 years of behavioural data to investigate what social factors influence the performance of these synchronous displays by male dolphins. We found that males perform synchronous displays for longer after engaging in affiliative contact behaviour, and that those with weaker social bonds engaged in more precise synchrony with each other. Aligning with recent research on vocal synchrony in this population, we provide evidence that male dolphins use synchrony to both maintain and strengthen their social bonds. These findings suggest that dolphins have converged with humans on the use of synchronous displays to sustain multiple social bonds in nested, complex social systems.
DOI: 10.6084/m9.figshare.30674993
title: Effect and mechanism of magnesium-modified biochar from citrus peel on cadmium remediation of water, soil, and plant

description: Cadmium (Cd) pollution influences environmental quality and human health, and magnesium (Mg)-modified biochar can efficiently clean Cd. However, to date, the effects and mechanisms of Mg-modified biochar generated from agricultural waste on comprehensive Cd remediation in water, soil, and plant is limited. In this study, the Mg-modified and unmodified biochars were produced from citrus peels. It was found that the surface area and pore volume of modified biochars were higher than those of unmodified biochars. After Mg modification, increase in H/C, O/C, and (O + N)/C ratios indicated Mg-modified biochars had a greater proportion of aromatic structures. In aqueous experiment, maximum Cd adsorption capacity and removal rate were observed in MgBC600, which was 182.24 mg/g and 97.75%. In pot experiment, MgBC600 significantly reduced Cd concentration of pakchoi by 44.40–46.20% and enhanced biomass by 40.68–112.50%. The application of MgBC600 promoted Cd immobilization by converting bioavailable Cd into insoluble forms. Mineral precipitation was the main mechanism (63.82–86.04%) of biochars for Cd remediation. XPS and XRD analysis proved the form of precipitation was CdO, Cd(OH)<sub>2</sub>, and CdCO<sub>3</sub>. Therefore, this study provides a theoretical basis for the resource utilization of citrus peels and the future application of Mg-modified biochar for environmental purification and safe crop production. Cadmium (Cd) pollution influences environmental quality and human health. This is the first study to integrate multiple perspectives (the effects of water, soil, and plant) to reveal the Cd adsorption mechanism of Mg-modified biochar produced from the agricultural waste citrus peel. We pointed out that the precipitation formation of CdO, Cd(OH)<sub>2</sub>, and CdCO<sub>3</sub> was the main mechanism of biochars for Cd remediation in both water and soil. This study provides a solid theoretical basis for the resource utilization of citrus peels and the future application of Mg-modified biochar for environmental purification and safe crop production (<i>e.g.,</i> vegetables).
DOI: 10.6084/m9.figshare.30674993.v1
title: Effect and mechanism of magnesium-modified biochar from citrus peel on cadmium remediation of water, soil, and plant

description: Cadmium (Cd) pollution influences environmental quality and human health, and magnesium (Mg)-modified biochar can efficiently clean Cd. However, to date, the effects and mechanisms of Mg-modified biochar generated from agricultural waste on comprehensive Cd remediation in water, soil, and plant is limited. In this study, the Mg-modified and unmodified biochars were produced from citrus peels. It was found that the surface area and pore volume of modified biochars were higher than those of unmodified biochars. After Mg modification, increase in H/C, O/C, and (O + N)/C ratios indicated Mg-modified biochars had a greater proportion of aromatic structures. In aqueous experiment, maximum Cd adsorption capacity and removal rate were observed in MgBC600, which was 182.24 mg/g and 97.75%. In pot experiment, MgBC600 significantly reduced Cd concentration of pakchoi by 44.40–46.20% and enhanced biomass by 40.68–112.50%. The application of MgBC600 promoted Cd immobilization by converting bioavailable Cd into insoluble forms. Mineral precipitation was the main mechanism (63.82–86.04%) of biochars for Cd remediation. XPS and XRD analysis proved the form of precipitation was CdO, Cd(OH)<sub>2</sub>, and CdCO<sub>3</sub>. Therefore, this study provides a theoretical basis for the resource utilization of citrus peels and the future application of Mg-modified biochar for environmental purification and safe crop production. Cadmium (Cd) pollution influences environmental quality and human health. This is the first study to integrate multiple perspectives (the effects of water, soil, and plant) to reveal the Cd adsorption mechanism of Mg-modified biochar produced from the agricultural waste citrus peel. We pointed out that the precipitation formation of CdO, Cd(OH)<sub>2</sub>, and CdCO<sub>3</sub> was the main mechanism of biochars for Cd remediation in both water and soil. This study provides a solid theoretical basis for the resource utilization of citrus peels and the future application of Mg-modified biochar for environmental purification and safe crop production (<i>e.g.,</i> vegetables).
DOI: 10.5281/zenodo.12684793
title: Data to the paper "Drop impact onto a moving substrate: Aerodynamic rebound"

description: These are the data used in the paper :"Drop Impact onto a  Moving Substrate: Aerodynamic Rebound."The work of Reda Kamal was funded by the European Union’s Horizon Europe research andinnovation program under the Marie Skłodowska-Curie grant agreement No 101072551 (TRACES).
DOI: 10.5281/zenodo.12684794
title: Data to the paper "Drop impact onto a moving substrate: Aerodynamic rebound"

description: These are the data used in the paper :"Drop Impact onto a  Moving Substrate: Aerodynamic Rebound."The work of Reda Kamal was funded by the European Union’s Horizon Europe research andinnovation program under the Marie Skłodowska-Curie grant agreement No 101072551 (TRACES).
DOI: 10.5281/zenodo.15124940
title: Data for study "A Multicenter Study to Standardize a Mouse Pneumonia Model with Pseudomonas aeruginosa and Klebsiella pneumoniae for Antibiotic Development"

description: The rise of antimicrobial resistance (AMR) underscores the urgent need for new therapeutic strategies. Reliable animal data is crucial for accelerating antibiotic development, and standardized murine infection models, such as the neutropenic mouse pneumonia model, could be key to enabling the generation of efficacy data with improved reproducibility and comparability among different laboratories. Improving reproducibility is essential for enhancing clinical translation. This study aims to establish a standardized murine pneumonia model to enhance the translation of preclinical findings into clinical applications. 

Using a consensus lung infection protocol, we tested 32 Klebsiella pneumoniae and Pseudomonas aeruginosa strains. Fifteen strains met our predefined virulence criteria—demonstrating at least a one log10 increase in bacterial load from baseline to endpoint while sustaining mouse survival for at least 12 hours post-inoculation. These strains are deposited at the German Collection of Microorganisms and Cell Cultures GmbH (DSMZ) and available to researchers.

Further studies at two or three independent sites (depending on strain) confirmed the virulence of eight strains, showing minimal variability in bacterial growth. These strains were incorporated into the COMBINE Preclinical Bacterial Strain Repository (PBSR) held at DSMZ. Based on these findings, we propose standardized experimental conditions, together with this defined strain panel, as a robust murine pneumonia model for preclinical testing of novel antibacterial therapies. This model provides a reproducible and well-characterized foundation for evaluating new anti-infective candidates. Ultimately, we believe the COMBINE protocol can improve the reliability and comparability of preclinical efficacy testing, and potentially reduce the number of animals needed, thus also contributing to the 3R (reduce, refine, replace) principles in animal welfare.

COMBINE Pneumonia Model resources



COMBINE preclinical repository with bacterial strains found to be reproducibly virulent and fulfilling performance criteria in the COMBINE standardised pneumonia mouse model.

Data from the COMBINE Multicenter Study to Standardize a Mouse Pneumonia Model with Pseudomonas aeruginosa and Klebsiella pneumoniae for Antibiotic Development  

Arrazuria R, Kerscher B, Huber KE, Hoover JL, Lundberg CV, Hansen JU, Sordello S, Renard S, Aranzana-Climent V, Hughes D, Gribbon P, Friberg LE, Bekeredjian-Ding I (2022): Expert workshop summary: Advancing toward a standardized murine model to evaluate treatments for antimicrobial resistance lung infections.Front Microbiol 13: 988725.

Arrazuria R, Kerscher B, Huber KE, et al. Variability of murine bacterial pneumonia models used to evaluate antimicrobial agents. Frontiers in Microbiology. 2022;13:988728.
DOI: 10.5281/zenodo.15124939
title: Data for study "A Multicenter Study to Standardize a Mouse Pneumonia Model with Pseudomonas aeruginosa and Klebsiella pneumoniae for Antibiotic Development"

description: The rise of antimicrobial resistance (AMR) underscores the urgent need for new therapeutic strategies. Reliable animal data is crucial for accelerating antibiotic development, and standardized murine infection models, such as the neutropenic mouse pneumonia model, could be key to enabling the generation of efficacy data with improved reproducibility and comparability among different laboratories. Improving reproducibility is essential for enhancing clinical translation. This study aims to establish a standardized murine pneumonia model to enhance the translation of preclinical findings into clinical applications. 

Using a consensus lung infection protocol, we tested 32 Klebsiella pneumoniae and Pseudomonas aeruginosa strains. Fifteen strains met our predefined virulence criteria—demonstrating at least a one log10 increase in bacterial load from baseline to endpoint while sustaining mouse survival for at least 12 hours post-inoculation. These strains are deposited at the German Collection of Microorganisms and Cell Cultures GmbH (DSMZ) and available to researchers.

Further studies at two or three independent sites (depending on strain) confirmed the virulence of eight strains, showing minimal variability in bacterial growth. These strains were incorporated into the COMBINE Preclinical Bacterial Strain Repository (PBSR) held at DSMZ. Based on these findings, we propose standardized experimental conditions, together with this defined strain panel, as a robust murine pneumonia model for preclinical testing of novel antibacterial therapies. This model provides a reproducible and well-characterized foundation for evaluating new anti-infective candidates. Ultimately, we believe the COMBINE protocol can improve the reliability and comparability of preclinical efficacy testing, and potentially reduce the number of animals needed, thus also contributing to the 3R (reduce, refine, replace) principles in animal welfare.

COMBINE Pneumonia Model resources



COMBINE preclinical repository with bacterial strains found to be reproducibly virulent and fulfilling performance criteria in the COMBINE standardised pneumonia mouse model.

Data from the COMBINE Multicenter Study to Standardize a Mouse Pneumonia Model with Pseudomonas aeruginosa and Klebsiella pneumoniae for Antibiotic Development  

Arrazuria R, Kerscher B, Huber KE, Hoover JL, Lundberg CV, Hansen JU, Sordello S, Renard S, Aranzana-Climent V, Hughes D, Gribbon P, Friberg LE, Bekeredjian-Ding I (2022): Expert workshop summary: Advancing toward a standardized murine model to evaluate treatments for antimicrobial resistance lung infections.Front Microbiol 13: 988725.

Arrazuria R, Kerscher B, Huber KE, et al. Variability of murine bacterial pneumonia models used to evaluate antimicrobial agents. Frontiers in Microbiology. 2022;13:988728.
DOI: 10.15468/dl.cwdczu
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Phylloscopus umbrovirens yemenensis"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002010-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sc54w6
title: Occurrence Download

description: A dataset containing 3837 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dikerogammarus villosus)",
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Specimen, Unknown evidence, Machine Observation, Occurrence evidence)",
 "Year is greater than or equal to 1971",
 "Year is less than or equal to 2025",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3837 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002008-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.11588/duerer.online.69203d776b969
title: Albrecht-Dürer-Haus, 186401
DOI: 10.15468/dl.3449ck
title: Occurrence Download

description: A dataset containing 353095 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae)",
 "Year is one of (2022, 2023, 2024, 2025)",
 "Geometry POLYGON((\n 11.5 54.9,\n 12.7 54.9,\n 12.7 55.9,\n 11.5 55.9,\n 11.5 54.9\n))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 353095 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001998-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3ebjg
title: Occurrence Download

description: A dataset listing the 1876 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lampyridae"
 ]
}

 The dataset's 1876 records were derived from 1385 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002001-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3w3459
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Specimen)",
 "OccurrenceStatus is Present",
 "TaxonKey is Apis mellifera Linnaeus, 1758",
 "Year 2025-2025"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003743-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ayxt2r
title: Occurrence Download

description: A dataset containing 13059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syzygium cumini (L.) Skeels",
 "HasCoordinate is true",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 13059 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003749-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29972617
title: The raw data of Chilo suppressalis based on microsatellite molecular markers in 2021, 2023 and 2024

description: A systematic study was conducted on the genetic variation, genetic differentiation, and genetic structure of Chilo suppressalis populations collected in Shenyang during the months of June to August in 2021, 2023, and 2024, using 12 microsatellite loci.
DOI: 10.6084/m9.figshare.29972617.v3
title: The raw data of Chilo suppressalis based on microsatellite molecular markers in 2021, 2023 and 2024

description: A systematic study was conducted on the genetic variation, genetic differentiation, and genetic structure of Chilo suppressalis populations collected in Shenyang during the months of June to August in 2021, 2023, and 2024, using 12 microsatellite loci.
DOI: 10.6084/m9.figshare.29972617.v2
title: The raw data of Chilo suppressalis based on microsatellite molecular markers in 2021, 2023 and 2024

description: A systematic study was conducted on the genetic variation, genetic differentiation, and genetic structure of Chilo suppressalis populations collected in Shenyang during the months of June to August in 2021, 2023, and 2024, using 12 microsatellite loci.
DOI: 10.15468/dl.zfsa8n
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "GadmGid is DEU.3_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Chaenotheca ferruginea (Turner ex Sm.) Mig."
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012821-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15477791
title: DAS data off the Cape Muroto in the Nankai Trough after the M7.6 Noto Peninsula earthquake

description: Distributed Acoustic Sensing (DAS) data (hdf5 data) with the Muroto Cable, southwest Japan, after the M7.6 Noto Peninsula earthquake (07:10 UTC, January 1, 2024). The period of DAS data is 7:00-24:00 on January 1.

The DAS measurement is conducted by AP Sensing with a sensing length of ~120 km along the Muroto Cable. Gauge length is 78.4 m. The waveforms were stacked in successive 5 channels to downsample to 49-m spacing and decimated to 100 Hz sampling.

The analysis of tremors which ocurred after the Noto Peninsula earthquake is described in a submitted paper.

Zip files include DAS data in hdf5 format. The file name of zip files indicate yyyymmdd_hh. The filename of hdf5 DAS data show the start time (year-month-day_hour.minute.second) in UTC. The data length of each file is one minute (100 Hz x 60 s=6000 points). The values of matrices in hdf5 files are converted to differential phase by multiplying pi/32768. After integrating the differential phases, phases can be converted to strain based on equation (10) of SEAFOM (2018) (https://seafom.com/?mdocs-file=1270). The optical wavelength of DAS system is 1550 nm, the effective index of refraction in sensing fiber is 1.4682, the photo-elastic scaling factor is 0.78.

channel_muroto.txt: DAS channel position information that are used for locating tremors. The first, second, third, fourth colums are channel number, longitude, latitude, elevation (m), respectively.

tremor_list_2024.txt: Tremor list observed by DAS after the Noto Peninsula earthquake. The first, second, third, fourth, fifth, sixth, sevnth, eighth colums are year, month, day, hour (UTC), minute, longitude, latitude, depth (km), respectively. We did not use channels further from 105 km, because the geometry of DAS cable is unclear in this range (updated 2025/08/20).
DOI: 10.5281/zenodo.16907853
title: DAS data off the Cape Muroto in the Nankai Trough after the M7.6 Noto Peninsula earthquake

description: Distributed Acoustic Sensing (DAS) data (hdf5 data) with the Muroto Cable, southwest Japan, after the M7.6 Noto Peninsula earthquake (07:10 UTC, January 1, 2024). The period of DAS data is 7:00-24:00 on January 1.

The DAS measurement is conducted by AP Sensing with a sensing length of ~120 km along the Muroto Cable. Gauge length is 78.4 m. The waveforms were stacked in successive 5 channels to downsample to 49-m spacing and decimated to 100 Hz sampling.

The analysis of tremors which ocurred after the Noto Peninsula earthquake is described in a submitted paper.

Zip files include DAS data in hdf5 format. The file name of zip files indicate yyyymmdd_hh. The filename of hdf5 DAS data show the start time (year-month-day_hour.minute.second) in UTC. The data length of each file is one minute (100 Hz x 60 s=6000 points). The values of matrices in hdf5 files are converted to differential phase by multiplying pi/32768. After integrating the differential phases, phases can be converted to strain based on equation (10) of SEAFOM (2018) (https://seafom.com/?mdocs-file=1270). The optical wavelength of DAS system is 1550 nm, the effective index of refraction in sensing fiber is 1.4682, the photo-elastic scaling factor is 0.78.

channel_muroto.txt: DAS channel position information that are used for locating tremors. The first, second, third, fourth colums are channel number, longitude, latitude, elevation (m), respectively.

tremor_list_2024.txt: Tremor list observed by DAS after the Noto Peninsula earthquake. The first, second, third, fourth, fifth, sixth, sevnth, eighth colums are year, month, day, hour (UTC), minute, longitude, latitude, depth (km), respectively. We did not use channels further from 105 km, because the geometry of DAS cable is unclear in this range (updated 2025/08/20).
DOI: 10.15468/dl.47fgta
title: Occurrence Download

description: A dataset containing 2885 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Thunbergia alata",
 "Year 1865-2015"
 ]
}

 The dataset includes 2885 records from 240 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024458-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7z88q
title: Occurrence Download

description: A dataset containing 8443 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xanthogaleruca luteola (O.F.Müller, 1766)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8443 records from 284 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009074-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/1qt-rq9-r7x
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4gq-s0p-hea
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6pc-ghh-cf7
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3fc-adx-8aw
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xt1-tvs-4sc
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.