cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6489935
title: State of research on carbon sequestration in Bangladesh: a comprehensive review

description: A deep interest is evident in carbon sequestration modeling in Bangladesh from the development of several allometric equations to estimate carbon sequestration by plants. It is linked to the evolving carbon offsetting approaches, for example, Clean Development Mechanism (CDM) and the REDD+, which require certifiable estimate of carbon captured by trees and forests. This review compiled a snapshot of state of the art in carbon modeling in Bangladesh. More than half of the published research focused on the development of allometric equations and forest carbon estimation. The comparison among available studies was challenging due to the use of different terminologies and assumptions and arbitrary combinations of parameters including age, topography, season, slope, crown diameter, etc. The spatial distribution of reports indicated narrow geographical focus outside forests in Chittagong and Sundarbans. Surprisingly, no attempts were evident to explore carbon stocks at the Chittagong Hill Tracts (CHTs) where majority of pristine forest areas of the country occurs. Bangladesh is likely to reforest the vast deforested areas in CHTs under CDM and REDD+ projects which requires extensive carbon modeling. Majority of the reports used conversion factor to calculate soil carbon instead of analytical estimation which might cause inaccurate estimation of soil carbon. Blue carbon assessment and policy implication of carbon studies are two areas where insufficient attention is evident. Bangladesh apparently needs to conduct wide-scale carbon modeling through the integration of GIS, remote sensing, etc to increase precision and accuracy of carbon stock assessments. .
DOI: 10.6084/m9.figshare.6489935.v1
title: State of research on carbon sequestration in Bangladesh: a comprehensive review

description: A deep interest is evident in carbon sequestration modeling in Bangladesh from the development of several allometric equations to estimate carbon sequestration by plants. It is linked to the evolving carbon offsetting approaches, for example, Clean Development Mechanism (CDM) and the REDD+, which require certifiable estimate of carbon captured by trees and forests. This review compiled a snapshot of state of the art in carbon modeling in Bangladesh. More than half of the published research focused on the development of allometric equations and forest carbon estimation. The comparison among available studies was challenging due to the use of different terminologies and assumptions and arbitrary combinations of parameters including age, topography, season, slope, crown diameter, etc. The spatial distribution of reports indicated narrow geographical focus outside forests in Chittagong and Sundarbans. Surprisingly, no attempts were evident to explore carbon stocks at the Chittagong Hill Tracts (CHTs) where majority of pristine forest areas of the country occurs. Bangladesh is likely to reforest the vast deforested areas in CHTs under CDM and REDD+ projects which requires extensive carbon modeling. Majority of the reports used conversion factor to calculate soil carbon instead of analytical estimation which might cause inaccurate estimation of soil carbon. Blue carbon assessment and policy implication of carbon studies are two areas where insufficient attention is evident. Bangladesh apparently needs to conduct wide-scale carbon modeling through the integration of GIS, remote sensing, etc to increase precision and accuracy of carbon stock assessments. .
DOI: 10.6084/m9.figshare.6489929
title: data.zip

description: MAsters thesis data.<br>
DOI: 10.6084/m9.figshare.6489929.v1
title: data.zip

description: MAsters thesis data.<br>
DOI: 10.6084/m9.figshare.6489482
title: Supplemental Material for Karaman et al., 2018

description: File S1 includes Table S1 and Table S2, for accuracies of 200 and 500 QTL scenarios, respectively.Files named as "genoData5chr._X.gz" are:- Genotype data (10 replicates) for 6 generations (G0-G5 as indicated in the article) each with 2200 individuals.- First column is ID, and remaining columns are genotypes on SNPs located on first 5 chromosomes.<br>- Number of SNPs on each chromosome are 2813, 2286, 2132, 2088 and 1835, respectively.<br><br>
DOI: 10.6084/m9.figshare.6489482.v1
title: Supplemental Material for Karaman et al., 2018

description: File S1 includes Table S1 and Table S2, for accuracies of 200 and 500 QTL scenarios, respectively.Files named as "genoData5chr._X.gz" are:- Genotype data (10 replicates) for 6 generations (G0-G5 as indicated in the article) each with 2200 individuals.- First column is ID, and remaining columns are genotypes on SNPs located on first 5 chromosomes.<br>- Number of SNPs on each chromosome are 2813, 2286, 2132, 2088 and 1835, respectively.<br><br>
DOI: 10.6084/m9.figshare.6489479
title: Data of Tunable terahertz metamaterial-based three-dimensional Dirac semimetal film

description: This is the supplementary data of Tunable terahertz metamaterial-based three-dimensional Dirac semimetal film.
DOI: 10.6084/m9.figshare.6489479.v1
title: Data of Tunable terahertz metamaterial-based three-dimensional Dirac semimetal film

description: This is the supplementary data of Tunable terahertz metamaterial-based three-dimensional Dirac semimetal film.
DOI: 10.6084/m9.figshare.6489473.v1
title: Transwell data

description: Migration and invasion assays were performed using Transwell chambers (3422, 24-well insert; 8-μm pore size; Corning Costar, NY, USA) coated with or without Matrigel (356234, BD Biosciences, NJ, USA). 4 × 10<sup>5 </sup>HNSCC cells in DMED medium were placed into the upper chamber, and medium supplementary with 10 % FBS was added to the lower chamber. Then PCI-37A cells were incubated for 24 hours for migration and 48 hours for invasion, and PCI-37A cells were incubated for 8 hours for migration and 24 hours for invasion. Then the migratory or invasive cells were fixed by 4% paraformaldehyde, stained with 0.1% crystal violet, and counted in three random fields under 200x magnification. Transwell migration assay and Martrigel invasion assay showed that an ectopic increased level of miR-92b could raise the migration and invasion ability of PCI-37A cells, while a reduced level of miR-92b led to a significant decrease in the number of migrating or invasive cells.After knocked down with SP1 expression, PCI-37A/B cells showed a significant decrease in migration and invasion.
DOI: 10.6084/m9.figshare.6489464.v1
title: SiRNA, shRNA sequence

description: HNSCC cell lines PCI-4A/4B and PCI-37A/37B were supplied by the University of Pittsburgh Cancer Institute (USA). These cell lines were cultured at 37 °C in a humidified atmosphere of 5% CO<sub>2</sub> in the medium of Dulbecco's modified Eagle's medium (DMEM; Invitrogen, Carlsbad, CA, USA) supplemented with 10% fetal bovine serum (FBS; Gibco, Carlsbad, CA, USA), 100U/ml penicillin G and 100U/ml streptomycin. The RNA oligonucleotide miR-92b mimics, inhibitor, SP1 siRNA, and negative control were synthesized by Genepharma (2603, Genepharma, Shanghai, China). MiR-92b inhibitor and negative control plasmid were purchased from GeneChem (PMDE249003218, GeneChem, Shanghai, China). Transfection agent Lipofectamine 2000 (11668500, Invitrogen) was used according to the manufacturer’s protocol. Cells were harvested 24 hours after transfection for cell migration, invasion, proliferation and wound healing assay, 48 hours after for RNA isolation and 72 hours after for western blot analysis.This is the sequences of siRNA and shRNA used in this study.
DOI: 10.6084/m9.figshare.6489431.v1
title: Lentivector information

description: The lentivector Psico was purchased from Addgene (#11578, Addgene, MA, USA). After being double digested with HpaI /XhoI, the vector was connected with synthetic SP1 knockdown or NC sequences. After screened through sequencing, the positive lentivectors carrying SP1 knock-down sequence or NC were selected for cell infection. PCI-37B cells cultivated in 6-well plate at a confluence of 70% were cocultured with lentivirus suspension (SP1 knock-down 1:100; NC 1:200) for 48 hours. Then cells were cultured with complete culture medium with 15ug/ml puromycin for one week to harvest strains that have stably low levels of SP1 expression.
DOI: 10.6084/m9.figshare.6489419
title: Efficacy and safety of ixekizumab in patients with plaque psoriasis across different degrees of disease severity: results from UNCOVER-2 and UNCOVER-3

description: <b>Purpose:</b> To evaluate short- and long-term efficacy and safety of ixekizumab in patients according to psoriasis severity. <b>Materials and methods:</b> Data were integrated from clinical trials (UNCOVER-2, UNCOVER-3). Patients received placebo, 80-mg ixekizumab every 2 weeks (IXEQ2W), every 4 weeks (IXEQ4W), or 50 mg etanercept (ETN) biweekly for 12 weeks, then open-label IXEQ4W (UNCOVER-3). Psoriasis severity was categorized by baseline Psoriasis Area and Severity Index (PASI &lt;20 and ≥20). Efficacy was evaluated by percentage reaching PASI 75, 90, 100, and absolute PASI ≤5, ≤2, and ≤1. <b>Results:</b> Significantly more patients with PASI ≥20 (vs. PASI &lt;20) were male and had higher body weight. After 12 weeks, both severity groups had significantly more IXEQ2W- than ETN-treated patients reach PASI 75, 90, 100, and absolute PASI ≤5, ≤2, ≤1. Fewer PASI ≥20 vs. PASI &lt;20 patients across treatments reached PASI ≤5, ≤2, and ≤1 at week 12. Efficacy was maintained during 156 weeks of ixekizumab treatment with no differences between groups. The IXEQ2W safety profile was similar between groups except for injection-site reactions (significantly higher in PASI &lt;20). <b>Conclusions:</b> Ixekizumab demonstrated a high level of efficacy and had a consistent safety profile in patients with different baseline psoriasis severity levels.
DOI: 10.6084/m9.figshare.6489419.v1
title: Efficacy and safety of ixekizumab in patients with plaque psoriasis across different degrees of disease severity: results from UNCOVER-2 and UNCOVER-3

description: <b>Purpose:</b> To evaluate short- and long-term efficacy and safety of ixekizumab in patients according to psoriasis severity. <b>Materials and methods:</b> Data were integrated from clinical trials (UNCOVER-2, UNCOVER-3). Patients received placebo, 80-mg ixekizumab every 2 weeks (IXEQ2W), every 4 weeks (IXEQ4W), or 50 mg etanercept (ETN) biweekly for 12 weeks, then open-label IXEQ4W (UNCOVER-3). Psoriasis severity was categorized by baseline Psoriasis Area and Severity Index (PASI &lt;20 and ≥20). Efficacy was evaluated by percentage reaching PASI 75, 90, 100, and absolute PASI ≤5, ≤2, and ≤1. <b>Results:</b> Significantly more patients with PASI ≥20 (vs. PASI &lt;20) were male and had higher body weight. After 12 weeks, both severity groups had significantly more IXEQ2W- than ETN-treated patients reach PASI 75, 90, 100, and absolute PASI ≤5, ≤2, ≤1. Fewer PASI ≥20 vs. PASI &lt;20 patients across treatments reached PASI ≤5, ≤2, and ≤1 at week 12. Efficacy was maintained during 156 weeks of ixekizumab treatment with no differences between groups. The IXEQ2W safety profile was similar between groups except for injection-site reactions (significantly higher in PASI &lt;20). <b>Conclusions:</b> Ixekizumab demonstrated a high level of efficacy and had a consistent safety profile in patients with different baseline psoriasis severity levels.
DOI: 10.6084/m9.figshare.6489353
title: aacna_rtqpcr

description: CT values of RTqPCR
DOI: 10.6084/m9.figshare.6489299
title: Genesis of the Archean–Paleoproterozoic Tabletop Domain, Rudall Province, and its endemic relationship to the West Australian Craton

description: The Tabletop Domain of the Rudall Province has been long thought an exotic entity to the West Australian Craton. Recent re-evaluation of this interpretation suggests otherwise, but is founded on limited data. This study presents the first comprehensive, integrated U–Pb geochronology and Hf-isotope analysis of igneous and metasedimentary rocks from the Tabletop Domain of the eastern Rudall Province. Field observations, geochronology and isotope results confirm an endemic relationship between the Tabletop Domain and the West Australian Craton (WAC), and show that the Tabletop Domain underwent a similar Archean–Paleoproterozoic history to the western Rudall Province. The central Tabletop Domain comprises Archean–Paleoproterozoic gneissic rocks with three main age components. Paleo–Neoarchean (<i>ca</i> 3400–2800 Ma) detritus is observed in metasedimentary rocks and was likely sourced from the East Pilbara Craton. Protoliths to mafic gneiss and metasedimentary rocks are interpreted to have been emplaced and deposited during the early Paleoproterozoic (<i>ca</i> 2400–2300 Ma), and exhibit age and isotopic affinities to the Capricorn Orogen basement (Glenburgh Terrane). Mid–late Paleoproterozoic mafic and felsic magmatism (<i>ca</i> 1880–1750 Ma) is assigned to the Kalkan Supersuite, which is exposed in the western Rudall Province. The Kalkan Supersuite provided the main source of detritus for mid–late Paleoproterozoic metasedimentary rocks in the Tabletop Domain. Similarities in the age and Hf-isotope compositions of detrital zircon from these metasedimentary rocks and Capricorn Orogeny basin sediments suggests that a regionally extensive, linked basin system may have spanned the northern WAC at this time. The Tabletop Domain records evidence for two metamorphic events. Mid–late Paleoproterozoic deformation (<i>ca</i> 1770–1750 Ma) was high-grade, regional and involved the development of gneissic fabrics. In contrast, early Mesoproterozoic (<i>ca</i> 1580 Ma) high-grade deformation was localised and associated with more widespread, late-stage, greenschist facies alteration. These new findings highlight that the Tabletop Domain experienced a much higher grade of deformation than previously assumed, with a Paleoproterozoic metamorphic history similar to that of the western Rudall Province.
DOI: 10.6084/m9.figshare.6489299.v1
title: Genesis of the Archean–Paleoproterozoic Tabletop Domain, Rudall Province, and its endemic relationship to the West Australian Craton

description: The Tabletop Domain of the Rudall Province has been long thought an exotic entity to the West Australian Craton. Recent re-evaluation of this interpretation suggests otherwise, but is founded on limited data. This study presents the first comprehensive, integrated U–Pb geochronology and Hf-isotope analysis of igneous and metasedimentary rocks from the Tabletop Domain of the eastern Rudall Province. Field observations, geochronology and isotope results confirm an endemic relationship between the Tabletop Domain and the West Australian Craton (WAC), and show that the Tabletop Domain underwent a similar Archean–Paleoproterozoic history to the western Rudall Province. The central Tabletop Domain comprises Archean–Paleoproterozoic gneissic rocks with three main age components. Paleo–Neoarchean (<i>ca</i> 3400–2800 Ma) detritus is observed in metasedimentary rocks and was likely sourced from the East Pilbara Craton. Protoliths to mafic gneiss and metasedimentary rocks are interpreted to have been emplaced and deposited during the early Paleoproterozoic (<i>ca</i> 2400–2300 Ma), and exhibit age and isotopic affinities to the Capricorn Orogen basement (Glenburgh Terrane). Mid–late Paleoproterozoic mafic and felsic magmatism (<i>ca</i> 1880–1750 Ma) is assigned to the Kalkan Supersuite, which is exposed in the western Rudall Province. The Kalkan Supersuite provided the main source of detritus for mid–late Paleoproterozoic metasedimentary rocks in the Tabletop Domain. Similarities in the age and Hf-isotope compositions of detrital zircon from these metasedimentary rocks and Capricorn Orogeny basin sediments suggests that a regionally extensive, linked basin system may have spanned the northern WAC at this time. The Tabletop Domain records evidence for two metamorphic events. Mid–late Paleoproterozoic deformation (<i>ca</i> 1770–1750 Ma) was high-grade, regional and involved the development of gneissic fabrics. In contrast, early Mesoproterozoic (<i>ca</i> 1580 Ma) high-grade deformation was localised and associated with more widespread, late-stage, greenschist facies alteration. These new findings highlight that the Tabletop Domain experienced a much higher grade of deformation than previously assumed, with a Paleoproterozoic metamorphic history similar to that of the western Rudall Province.
DOI: 10.6084/m9.figshare.6488336
title: Additional file 9: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: Genome wide distribution of XP-EHH from Azeri and Khuzestani buffalo breed values. (TXT 2963Â kb)
DOI: 10.6084/m9.figshare.6488336.v1
title: Additional file 9: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: Genome wide distribution of XP-EHH from Azeri and Khuzestani buffalo breed values. (TXT 2963Â kb)
DOI: 10.6084/m9.figshare.6488324
title: Additional file 8: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: Genome wide distribution of iHS from Khuzestani buffalo breed values. (TXT 2864Â kb)
DOI: 10.6084/m9.figshare.6488324.v1
title: Additional file 8: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: Genome wide distribution of iHS from Khuzestani buffalo breed values. (TXT 2864Â kb)
DOI: 10.6084/m9.figshare.6488321
title: Additional file 7: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: Genome wide distribution of iHS from Azeri buffalo breed values. (TXT 2913Â kb)
DOI: 10.6084/m9.figshare.6488321.v1
title: Additional file 7: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: Genome wide distribution of iHS from Azeri buffalo breed values. (TXT 2913Â kb)
DOI: 10.6084/m9.figshare.6488306
title: Additional file 5: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: Adjecent r2 information. (XLS 67Â kb)
DOI: 10.6084/m9.figshare.6488306.v1
title: Additional file 5: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: Adjecent r2 information. (XLS 67Â kb)
DOI: 10.6084/m9.figshare.6488288
title: Additional file 2: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: Genomic matrix of studied Iranian Azeri and Khuzestani buffalo breeds. (XLS 1750Â kb)
DOI: 10.6084/m9.figshare.6488288.v1
title: Additional file 2: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: Genomic matrix of studied Iranian Azeri and Khuzestani buffalo breeds. (XLS 1750Â kb)
DOI: 10.6084/m9.figshare.6488273
title: Additional file 13: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: Windowed FST output file. (XLS 6816Â kb)
DOI: 10.6084/m9.figshare.6488273.v1
title: Additional file 13: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: Windowed FST output file. (XLS 6816Â kb)
DOI: 10.6084/m9.figshare.6488264
title: Additional file 12: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: FST output file. (XLS 9242Â kb)
DOI: 10.6084/m9.figshare.6488264.v1
title: Additional file 12: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: FST output file. (XLS 9242Â kb)
DOI: 10.6084/m9.figshare.6488261
title: Additional file 6: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

description: OTUs at Genus level (frequency and correlations). Table S5 A Spearman (p) and Pearson (r) correlation indexes between the soil chemical parameters and the relative abundance of archaeal and bacterial OTUs (only significant values are shown: r or p &gt;0.4 or
DOI: 10.6084/m9.figshare.6488261.v2
title: Additional file 6: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

description: OTUs at Genus level (frequency and correlations). Table S5 A Spearman (p) and Pearson (r) correlation indexes between the soil chemical parameters and the relative abundance of archaeal and bacterial OTUs (only significant values are shown: r or p &gt;0.4 or
DOI: 10.6084/m9.figshare.6488261.v1
title: Additional file 6: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

description: OTUs at Genus level (frequency and correlations). Table S5 A Spearman (p) and Pearson (r) correlation indexes between the soil chemical parameters and the relative abundance of archaeal and bacterial OTUs (only significant values are shown: r or p &gt;0.4 or
DOI: 10.6084/m9.figshare.6488255
title: Additional file 11: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: Map file after QC. (TXT 1809Â kb)
DOI: 10.6084/m9.figshare.6488255.v1
title: Additional file 11: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: Map file after QC. (TXT 1809Â kb)
DOI: 10.6084/m9.figshare.6488249
title: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

description: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures
DOI: 10.6084/m9.figshare.6488249.v2
title: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

description: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures
DOI: 10.6084/m9.figshare.6488249.v1
title: Additional file 5: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

description: Bacteria and Archaea Phyla correlations. Table S4 A1 Bacteria Relative Frequency (overall abundance &gt;0.5%). Table S4 A2 Bacteria Relative Frequency (overall abundance &lt;0.5%). Table S4 B1 Archaea Relative Frequency (related to Bacteria %). Table S4 B2 Archaea Relative Frequency (Only Archaea). Table S4 C Pearson (r) and Spearman (p) correlation indexes between soil parameters and the relative abundance of archaeal and bacterial phyla (only significant values are shown: r or ? &gt;0.4 or
DOI: 10.6084/m9.figshare.6488231
title: Additional file 10: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: Genes included in selected regions (Biomart input & output). (XLS 105Â kb)
DOI: 10.6084/m9.figshare.6488231.v1
title: Additional file 10: of A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

description: Genes included in selected regions (Biomart input & output). (XLS 105Â kb)
DOI: 10.6084/m9.figshare.6488225
title: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

description: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures
DOI: 10.6084/m9.figshare.6488225.v2
title: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

description: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures
DOI: 10.6084/m9.figshare.6488225.v1
title: Additional file 4: of Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

description: Table S6 Random Forests (RF) models for each OTU (no significant values are reported as "0"). (XLSX 622 kb)