cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.14457/cu.the.2012.939
title: Demographic, socio-economic, and environmental factors associated with diarrhoea morbidity in children under- five in rural Odisha : a study of Rayagada District-India

description: Background: According to the UNICEF report, pneumonia and diarrhoea, the two biggest killers of children, killed about 2,197,000 children less than five years of age in 2010, making up 29 per cent of all child deaths under age five worldwide. And with 609,000 deaths India topped the list of the 75 countries with the highest mortality burden attributed to the two diseases The main purpose of this study was to determine the association of demographic, socio-economic, and environmental with diarrhoea morbidity in children under five in rural odisha, India.Methods: A cross-sectional study was carried out in the severely Diarrhoea affected blocks of the Rayagada District to find out the association between socio-economic, environmental and demographic factors with Diarrhoea among under five children. The study was be based on the primary information obtained from the mothers of the under five children. Quantitative research methodology was applied for this study. Data Analysis was done using binary logistic regression with statistical significance of each analysis against the p value of 0.2.Results: it was observed that out of the 630 children studies 42% had diarrhoea within last two months of the study. Factors like mother’s education, age of the child, child’s immunization status, Breast feeding status, source of drinking water, its treatment and cooking place has association in diarrhoea outcome of a under five child. After Binary logistic regression it was found that factors like age of the child and source of drinking water and separate room for cooking were highly associated with diarrhoea in under-five children of the study area.Conclusions: considering the high prevalence of the diarrhoea Continued efforts to promote hygienic practices in child care, special attention in the care of children within the age group 7-12 months, treatment of both water source and awareness about treatment of water before consumption and availability of anti-diarrhoeal medicines at the village level round the year, prolonged breast feeding and promotion of Health Education are recommended.
DOI: 10.25550/1-70kp
title: Activity of predicted human neural crest enhancer near Zfhx4 in E13.5 transgenic mouse embryos– Tg(hg38_chr8:76914760-76915623::LacZ).

description: Tg(hg38_chr8:76914760-76915623::LacZ) demonstrates no reproducible enhancer activity at E13.5.
DOI: 10.25550/25w8
title: MicroCT-Head Wnt1-Cre;Alk5fl/fl mouse at P0

description: This dataset includes microCT scans of the head tissue of Wnt1-Cre;Alk5fl/fl (YC389CCMB) at P0. The scans are in NiFTI format, which can be read by a number of free software applications including those listed below. To receive the scans in DICOM format, please email info@facebase.org. The following programs allow you to load and explore files in NiFTI format: -- ImageJ, a java-based program that runs on most operating systems, including MAC OSX -- MBAT, from the Laboratory of Neural Imaging at USC -- Mango, from Neuroimaging Informatics Tools and Resources Clearinghouse, offers desktop, web, and iPad-compatible versions -- MRIcro, which runs on Windows and Linux systems
DOI: 10.25550/26pr
title: Cell Proliferation Heat Map of E10.5 mouse embryo

description: Whole mount staining was used for E10.5 samples. All samples were stained with Ki67 and DAPI. E10.5 whole mount embryos were imaged using Optical Projection Tomography (OPT). Heat maps were generated from images using ImageJ and Amira. Heat maps for E10.5 whole mount embryos showed proliferative cells in specific regions of the embryo.
DOI: 10.25550/3q22
title: Activity of human neural crest enhancer near FOXI2 in E11.5 transgenic mouse embryo – Tg(hg38_chr10:127774583-127775373::LacZ).

description: Tg(hg38 _chr10:127774583-127775373::LacZ) with human biased activity in the 2nd branchial arch and an expansion of expression in the frontonasal process when compared to the activity of the equivalent chimp enhancer. LacZ signal was also consistently observed in the periocular mesenchyme, distal maxillary and mandibular 1st branchial arch, anterior forelimb and hindlimb buds, and dorsal root ganglia.
DOI: 10.25550/3q26
title: Activity of chimp neural crest enhancer near FOXI2 in E11.5 transgenic mouse embryo – Tg(panTro4_chr10:127449059-127449849::LacZ).

description: Tg(panTro4_chr10:127449059-127449849::LacZ) chimp neural crest enhancer with activity in the frontonasal process, periocular mesenchyme, distal maxillary and mandibular 1st branchial arch, anterior forelimb and hindlimb buds, and dorsal root ganglia. This enhancer lacks the expression in the rostral frontonasal process and 2nd branchial arch that is observed with the equivalent human enhancer, demonstrating human biased activity when comparing these two species.
DOI: 10.25550/v2m
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm463

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr13:119304649-119305832 **Name:** mCF149 **Vista Enhancer ID:** mm463 **Nearest craniofacial gene or locus:** FGF10 **Enhancer expression:** positive **Tissues where active:** branchial arch **Comment on OPT files:** embryo damaged during OPT. Has to be re-sent. This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * 4 movie (.avi) files: A CLIP file that provides an overview of the 3-D model generated by Optical Projection Tomography (OPT). Thresholding-based false-color representation shows unstained regions of the embryo in green, LacZ signal in red. In addition, 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. See links in External Referece section to download the following movie files: Overview movie, Coronal plane movie, Sagittal plane movie, Transverse plane movie * 4 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ] * Tested element.txt: Download the text file mCF149metadata.txt from the External Reference section .
DOI: 10.25550/vsj
title: Gene expression microarray - mouse E8.5 Hindbrain Neural Epithelium

description: Gene expression microarray using tissue obtained by laser capture microdissection (LCM) from the Hindbrain Neural Epithelium of mouse embryos at E8.5.
DOI: 10.14457/cu.the.2012.940
title: Evaluation of low salinity brine injection in sandstone reservoir

description: Water injection is a process to maintain reservoir pressure and to sweep remaining hydrocarbon toward a production well when primary recovery is not adequate. Recent studies suggested that injecting Low Salinity Brine (LSB) could yield additional oil recovery. LSB injection is simulated using CMG STARS in this study.The results show that sensitivity of several parameters significantly affects the effectiveness of LSB injection in inclined sandstone reservoirs. LSB is assumed to be injected throughout the production period of reservoir. The result shows that LSB injection yields 5.1% to 7.7% of additional oil recovery factor compared to conventional waterflooding. Besides, the benefit of LSB injection is greater when formation water salinity is higher, reaching 15.2% to 16.7% when formation water is 100,000 ppm. The presence of mobile connate water, highly viscous oil, and oil-wet reservoir significantly reduces the ultimate oil recovery factor. Besides, unsuitable Corey-oil exponent leads to an error in simulation. The LSB slug size of 0.25 PV seems to be an optimal size, whereas LSB injection should be implemented from the first day of reservoir exploitation. Injection rate also significantly affects the oil recovery since the worst injection rate leads to water tongueing and hence, early water breakthrough is pronounced. Under the production conditions used in this simulation study, the dip angle of 45° is found as the best inclination that stabilizes the waterflood front and provides the best LSB injection result.
DOI: 10.15468/zfvecn
title: One new species and one new Chinese record of Neoperla (Plecoptera: Perlidae) from Mount Shiwandashan of the Guangxi Zhuang Autonomous Region of southern China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mo, Raorao, Yao, Gang, Wang, Guoquan, Li, Weihai (2019): One new species and one new Chinese record of Neoperla (Plecoptera: Perlidae) from Mount Shiwandashan of the Guangxi Zhuang Autonomous Region of southern China. Zootaxa 4652 (3): 497-506, DOI: https://doi.org/10.11646/zootaxa.4652.3.6
DOI: 10.25550/26zc
title: Images of P0 neonates and E10.5 mouse embryos from two different Fgf8 allelic series

description: Robustness to perturbation is a fundamental feature of complex organisms. Mutations are the raw material for evolution, yet robustness to their effects is required for species survival. The mechanisms that produce robustness are poorly understood. Nonlinearities are a ubiquitous feature of development that may link variation in development to phenotypic robustness. Here, we manipulate the gene dosage of a signaling molecule, Fgf8, a critical regulator of vertebrate development. We demonstrate that variation in Fgf8 expression has a nonlinear relationship to phenotypic variation, predicting levels of robustness among genotypes. Differences in robustness are not due to gene expression variance or dysregulation, but emerge from the nonlinearity of the genotype–phenotype curve. In this instance, embedded features of development explain robustness differences. How such features vary in natural populations and relate to genetic variation are key questions for unraveling the origin and evolvability of this feature of organismal development.
DOI: 10.25550/3qha
title: Activity of chimp neural crest enhancer near COL13A1 in E11.5 transgenic mouse embryo – Tg(panTro4_chr10: 68198369-68199194::LacZ).

description: Tg(panTro4_chr10: 68198369- 68199194::LacZ) chimp neural crest enhancer with activity in the forebrain, midbrain, hindbrain, trigeminal (V) ganglion, and midgut. This enhancer lacks the expression in the frontonasal process, optic cup, branchial arches, heart field, limb buds, and somites that is observed with the equivalent human enhancer, demonstrating a human species-specific bias when comparing these two species.
DOI: 10.25550/3tgj
title: Activity of predicted human neural crest enhancer near ALX4 in E11.5 transgenic mouse embryo - Tg(hg38_chr11:44385724-44386444::LacZ)

description: Tg(hg38_chr11:44385724-44386444::LacZ) shows minimal to no replicable enhancer activity following multiple rounds of construct injection. Weak LacZ expression was observed in the midbrain of 1/19 PCR positive embryos.
DOI: 10.25550/3tja
title: Activity of predicted P. troglodytes neural crest enhancer near ALX4 in E11.5 transgenic mouse embryo - Tg(panTro4_chr11:44486755-44487474::LacZ)

description: Tg(panTro4_chr11:44486755-44487474::LacZ) shows minimal to no replicable enhancer activity following multiple rounds of injection. Strong lacZ expression was observed in one 1/12 total PCR positive embryos.
DOI: 10.25550/tkg
title: microMRI images of skulls of Wnt1 * Tgfbr2F/F * Alk5F/+ mice at E18.5

description: microMRI images of skulls of Wnt1Tgfbr2F/F * Alk5F/+ mice at E18.5. The dataset contains 3-D images in niftii format for 1 mouse.
DOI: 10.25550/tt4
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm400

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr6: 4503540-4505066 **Name:** mCF86 **Vista Enhancer ID:** mm400 **Nearest craniofacial gene or locus:** Col1A2 **Enhancer expression:** positive **Tissues where active:** branchial arch, facial mesenchyme, nose, limbs **Comment on OPT files:** signal is internal This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * 4 movie (.avi) files: A CLIP file that provides an overview of the 3-D model generated by Optical Projection Tomography (OPT). Thresholding-based false-color representation shows unstained regions of the embryo in green, LacZ signal in red. In addition, 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. See links in External Referece section to download the following movie files: Overview movie, Coronal plane movie, Sagittal plane movie, Transverse plane movie * 4 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ]. * Tested element.txt: Download the text file mCF86metadata.txt from the External Reference section
DOI: 10.25550/ty4
title: microCT - Soft Tissue of Msx1-- Mouse at E15.5

description: Mouse ID: AH264 This dataset includes 1 microCT scan of the skull of an Msx1-- mouse at E15.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tyy
title: microCT - Bone Tissue of a K14-Cre;Fgfr2fl/fl mouse at E17.5

description: Mouse ID: ZZ290 This dataset includes microCT scans of the skull of a K14-Cre;Fgfr2fl/fl mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vrr
title: Skull vault formation in individual WT AB Fish

description: An individual fish was imaged successively from 11-15 dpf by confocal microscopy, during the period of induction and growth of the frontal and parietal bones. The fish was transgenic for col1a1a:gfp, marking chondrocytes, and for sp7:mcherry, marking osteoblasts.
DOI: 10.25550/vvp
title: microMRI images of skulls of Msx1+/- mice at E18.5

description: microMRI images of skulls of Msx1+/- mice at E18.5. The dataset contains 3-D images in niftii format for each of 7 mice.
DOI: 10.5281/zenodo.3441860
title: SE-179

description: This dataset contains a collection of Stackexchange (https://stackexchange.com/) posts, grouped by StackExchange sites and authors. It is split into training and test files, whereby the respective filename corresponds to the respective author. Note that not all authors of the training set are present in the test set.
DOI: 10.5281/zenodo.3441861
title: SE-179

description: This dataset contains a collection of Stackexchange (https://stackexchange.com/) posts, grouped by StackExchange sites and authors. It is split into training and test files, whereby the respective filename corresponds to the respective author. Note that not all authors of the training set are present in the test set.
DOI: 10.15468/mjsdwc
title: A new species of suckermouth catfish (Mochokidae: Chiloglanis) from the Rio Mongo in Equatorial Guinea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Schmidt, Ray C., Barrientos, Christian (2019): A new species of suckermouth catfish (Mochokidae: Chiloglanis) from the Rio Mongo in Equatorial Guinea. Zootaxa 4652 (3): 507-519, DOI: https://doi.org/10.11646/zootaxa.4652.3.7
DOI: 10.25550/23rt
title: Interpremaxillary suture, WT and Fgfr2+/S252W (Apert syndrome mouse model), E16.5 and E18.5

description: RNA-Seq libraries are from laser capture microdissections of C57BL/6J Fgfr2+/+ (W) and C57BL/6J Apert syndrome EIIA-Cre+;Fgfr2+/S252W (A) mice, at development stages TS24/E16.5 (6) and TS26/E18.5 (8), from the interpremaxillary suture (IPM), with 5 biological replicates (1-5), of the suture mesenchyme (SM) and premaxillary bone osteogenic front (PM). “W8IPM1SM”, for example, indicates WT, E18.5, interpremaxillary suture, replicate 1, suture mesenchyme.
DOI: 10.25550/2a8p
title: Whole-genome transcriptome profiling of E14.5 Wnt1-Cre;Tgfbr2flfl by microarray of maxilla and mandible

description: We performed the global gene expression profiling analysis of the proximal (P ) and distal (D) regions of the mandible and proximal (P ) and distal (D) regions of the maxilla using microarray. Total RNA samples (1 ug per sample) were converted into biotin-labeled cRNA using the GeneChip® IVT Labeling Kit and standard protocols recommended by Affymetrix (Santa Clara, CA). Fragmented cRNA was applied to GeneChip, Mouse Genome 430 2.0 Arrays (Affymetrix) that contain probe sets designed to detect over 39,000 transcripts. Microarrays were hybridized, processed and scanned, as previously described using manufacturers recommended conditions.
DOI: 10.25550/2arp
title: Intermaxillary suture, WT and Fgfr2+/S252W (Apert syndrome mouse model), E16.5 and E18.5

description: RNA-Seq libraries are from laser capture microdissections of C57BL/6J Fgfr2+/+ (W) and C57BL/6J Apert syndrome EIIA-Cre+;Fgfr2+/S252W (A) mice, at development stages TS24/E16.5 (6) and TS26/E18.5 (8), from the intermaxillary suture (IM), with 5 biological replicates (1-5), of the suture mesenchyme (SM) and maxillary bone osteogenic front (MX). “W8IM1SM”, for example, indicates WT, E18.5, intermaxillary suture, replicate 1, suture mesenchyme.
DOI: 10.25550/2b8y
title: FB0075_Trio WES_Oculoectodermal syndrome

description: The purpose of this study is to collect, process, and study samples from individuals with known or possible genetic disease, and their family members. The study’s broad goals are to better understand the genetic causes of disease in order to improve the ability to diagnose, treat, and even prevent illness. Our goal is to obtain a genetic diagnosis for health problem(s) the proband has, so the information can be used, when appropriate, to guide medical decisions made by the affected individuals doctor. This is restricted-access human data. To gain access to this data, you must first go through the [process outlined here](/odocs/data-guidelines/). This case was brought to the attention of FaceBase from Dr. Joan Stoler of Boston Children's Hospital. Phenotype - Cutis aplasia - Limb length discrepancy noted during first year of life - Non-ossifying fibromas - Oral surgery for tooth extraction, addition of caps and crowns for tooth decay
DOI: 10.25550/tmj
title: ChIP-seq of multiple histone marks and RNA-seq from e11.5 mouse face subregions

description: ChIP-seq, RNA-seq and transgenic assays to identify non-coding regulatory elements (enhancers) active during craniofacial development
DOI: 10.25550/tva
title: Gene expression microarray - mouse E10.5 medial-nasal process

description: Gene expression microarray using tissue obtained by laser capture microdissection (LCM) from the medial-nasal process of mouse embryos at E10.5. The results are also presented as tracks on the Genome Browser (see links in the Additional Information section).
DOI: 10.25550/v66
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm428

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr5:38308981-38309832 **Name:** mCF114 **Vista Enhancer ID:** mm428 **Nearest craniofacial gene or locus:** Msx1 **Enhancer expression:** positive **Tissues where active:** branchial arch, facial mesenchyme, genital tubercle, limb **Comment on OPT files:** slightly damaged embryo This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * 4 movie (.avi) files: A CLIP file that provides an overview of the 3-D model generated by Optical Projection Tomography (OPT). Thresholding-based false-color representation shows unstained regions of the embryo in green, LacZ signal in red. In addition, 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. See links in External Referece section to download the following movie files: Overview movie, Coronal plane movie, Sagittal plane movie, Transverse plane movie * 4 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ] * Tested element.txt: Download the text file mCF114metadata.txt from the External Reference section .
DOI: 10.25550/vwj
title: microMRI images of skulls of wild type mice at E13.5

description: microMRI images of skulls of unaffected wild type mice at E13.5. The dataset contains 3-D images in niftii format for each of 4 mice.
DOI: 10.25550/vy0
title: Skull vault formation in individual WT AB Fish

description: An individual fish was imaged successively from 12-25 dpf by confocal microscopy, during the period of induction and growth of the frontal and parietal bones. The fish was transgenic for col1a1a:gfp, marking chondrocytes, and for sp7:mcherry, marking osteoblasts.
DOI: 10.5519/qd.2g0l7yj2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (6075 records)
DOI: 10.25550/tke
title: microCT - Bone Tissue of C57BL6J at E17.5

description: This dataset includes 1 microCT scan of the skull of a C57BL6J mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tyc
title: Mouse E8.5 HCR images

description: a collection of HCR images of mice at E8.5. Includes expression data from: Wnt1-GFP, Msx1, Twist1, and Wnt1.
DOI: 10.25550/v2r
title: microCT - Soft Tissue of Tgfbr2 control mouse at E16.5

description: Mouse ID: JI312 This dataset includes microCT scans of the skull of Tgfbr2 control mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format