cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28407908.v2
title: Supplemental Data Set

description: <b>Characteristics of the </b><b>c</b><b>ohort </b><b>u</b><b>nderpinning this </b><b>c</b><b>ross-</b><b>s</b><b>ectional </b><b>s</b><b>tudy</b><b>Methods</b>Part A: Metabolomics profiling and data preprocessingPart B: Drug deconfounding analysisPart C: Transcriptomics profiling and data preprocessing<b>Table </b><b>S</b><b>1. </b>Diagnosis and pharmacological treatment of 19 HIV-positive individuals with cardiovascular disease<b>Table </b><b>S2</b><b>.</b><b> </b>Classification of metabolomic features as dysmetabolic, escalation, de-escalation and CVD<b>Table </b><b>S3</b><b>. </b>Classification of transcriptome features as dysmetabolic, escalation, de-escalation and CVD<b>Table </b><b>S4.</b> Classification of metabolomic features as dysmetabolic, escalation, de-escalation and CVD as well as comparison based on the cardiometabolic disease spectrum<b>Table </b><b>S5. </b>Pathway enrichment analysis of metabolome markers in the cardiometabolic disease spectrum in people living with HIV<b>Fig</b><b>.</b><b> S1</b><b> </b>Operational classification of metabolome features from the perspective of CVD pathology<b>Fig. S</b><b>2 </b>Methodology employed for the classification of transcriptome features in the cross-sectional study<b>Fig. S</b><b>3 </b>Transcriptome features associated with CVD and its dysmetabolic pre-morbidities<b>Fig. S</b><b>4 </b>Functional enrichment analysis of transcriptome markers
DOI: 10.6084/m9.figshare.28839773.v1
title: Differentially expressed genes in the fat body of Colorado potato beetle at different life stages

description: Differentially expressed genes in the fat body of Colorado potato beetle at different life stages. RNA-seq data was analyzed using Salmon, DESeq2, and clusterProfiler.
DOI: 10.6084/m9.figshare.3563457.v1
title: Full Archive

description: Full Archive
DOI: 10.6084/m9.figshare.5866971.v1
title: Fipy Benchmark 3

description: Simulation of a dendrite for phase field benchmark 3 https://pages.nist.gov/pfhub/benchmarks/benchmark3.ipynb/<br>
DOI: 10.17632/wccvm8p5gx
title: Evolutionary units delimitation and continental multilocus phylogeny of the hyperdiverse catfish genus Hypostomus

description: Evolutionary units delimitation and continental multilocus phylogeny of the hyperdiverse catfish genus Hypostomus. Jardim de Queiroz L, Cardoso Y, Jacot-des-Combes C, Bahechar IA, Lucena CA, Rapp Py-Daniel L, Sarmento Soares LM, Nylinder S, Oliveira C, Parente TE, Torrente-Vilara G, Covain R, Buckup P, Montoya-Burgos JI. Mol Phylogenet Evol. 2019 Dec 16;145:106711. doi: 10.1016/j.ympev.2019.106711. PMID: 31857199
DOI: 10.6084/m9.figshare.21463119.v1
title: The genome of Chrysanthemum indicum

description: Ci.genome.fa: Genome assembly file Ci.gff3: Gene annotation file Ci.cds.fa: Coding sequences of protein-coding genes Ci.pep.fa: Protein sequences of protein-coding genes
DOI: 10.6084/m9.figshare.24939270.v1
title: Internal tides off California observed by satellite altimetry

description: Multi-satellite altimetry data from 1993 to 2019 (27 years) are used to map internal tides off California. All altimetry data (exact-repeat and non-repeat-track) measured during this period are used. Our 3-step mapping procedure consists of two rounds of plane wave analysis with a spatial bandpass filter in between. Internal tide parameters are computed from the World Ocean Atlas 2018 hydrographic climatology. Three internal tide constituents are mapped: mode-1 M2, mode-2 M2, and mode-1 S2. The internal tide field of each constituent is a superposition of multiple internal waves; therefore, at each grid point, we determine five waves in arbitrary horizontal directions. In the end, we divide the multi-wave interference field into 3 components by propagation direction, and the results give a clear view of internal tidal beams.
DOI: 10.6084/m9.figshare.28539434.v1
title: Network Topology Generation Code

description: The dataset contains codes generated by the BA network, codes generated by the WS network, and codes generated by the BA hypernetwork, and the real dataset is taken from https://www.cs.cornell.edu/~arb/data/phs-email-Enron/ .
DOI: 10.6084/m9.figshare.12162420.v1
title: GTT-1-protein-011.dcd

description: Trajectories dataTrajectories of WW domain
DOI: 10.6084/m9.figshare.21680636.v1
title: Supplementary Material for: Proton beam therapy versus radiofrequency ablation for patients with treatment-naïve single hepatocellular carcinoma: a propensity score analysis

description: Introduction: Proton beam therapy (PBT) is known to be an effective locoregional treatment for hepatocellular carcinoma (HCC). However, few comparative studies in treatment-naïve cases have been reported. The aim of this study was to compare the survival outcomes of PBT with those of radiofrequency ablation (RFA) in patients with treatment-naïve solitary HCC. Methods: Ninety-five consecutive patients with treatment-naïve HCC, a single nodule measuring ≤5 cm in diameter, and a Child-Pugh score of ≤8 who were treated with PBT at the University of Tsukuba Hospital between 2001 and 2013 were enrolled in the study. In addition, 836 patients with treatment-naïve HCC treated by RFA at the University of Tokyo Hospital during the same period were analyzed as controls. Recurrence-free survival (RFS) and overall survival (OS) were compared in 83 patient pairs after propensity score matching. Results: The 1-year, 3-year, and 5-year RFS rates were 86.6%, 49.5%, and 35.5%, respectively, in the PBT group and 59.5%, 34.0%, and 20.9% in the RFA group (p = 0.058); the respective OS rates were 97.6%, 77.8%, and 57.1% in the PBT group and 95.1%, 81.7%, and 67.7% in the RFA group (p = 0.16). Regarding adverse effects, no grade 3 or higher adverse events were noted in the PBT; however, two grade 3 adverse events occurred within 30 days of RFA in the RFA group, one hemoperitoneum and one hemothorax.. Discussion/Conclusion: After propensity score matching, PBT showed no significant difference in RFS and OS compared to RFA. PBT can be an alternative for patients with solitary treatment-naïve HCC.
DOI: 10.6084/m9.figshare.25907686.v1
title: Dataset for ASE paper

description: Dataset for ASE paper: React
DOI: 10.6084/m9.figshare.c.3656888_d2.v1
title: Additional file 3 of Detecting very low allele fraction variants using targeted DNA sequencing and a novel molecular barcode-aware variant caller

description: The spreadsheet lists all unique heterozygous NA12878 variants in the N0030 target region, as well as the corresponding gene names. (XLSX 67.6 kb)
DOI: 10.17632/rkmf4gxdwb
title: LINF_170009400

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.14921670.v2
title: A squeezed quantum microcomb on a chip. Data for figure 2 to 6

description: These are all the raw data for the figure 2 to 6 in "A squeezed quantum microcomb on a chip".
DOI: 10.6084/m9.figshare.25249801.v1
title: <b>Users’ Unverified Information-Sharing Behavior on Social Media: The Role of Reasoned and Social Reactive Pathways</b>

description: <b>Users’ Unverified Information-Sharing Behavior on Social Media: The Role of Reasoned and Social Reactive Pathways</b>
DOI: 10.6084/m9.figshare.28158104.v1
title: Data for "Effects of ambient temperature on EV's electricity consumption are reduced in a warming world"

description: This dataset includes global simulations of electric vehicle (EV) electricity consumption patterns from 2010 to 2100 across a 0.5°×0.5° spatial resolution grid. It covers data on EV stock, vehicle-miles traveled (VMT), electricity efficiency, and ambient temperature impacts. The dataset integrates historical data, climate scenarios (RCP-SSP pathways), and machine learning predictions to estimate EV electricity demand, oil displacement, and indirect greenhouse gas emissions. Additionally, it includes monthly average temperature data, EV response functions to temperature, and projections for global EV adoption and energy use under multiple policy scenarios.
DOI: 10.6084/m9.figshare.28919663.v1
title: Supplementary Material for: Effect of early life income and sugars intake on child oral health – marginal structural modelling using a birth cohort study

description: Introduction: Determinants of oral health are formed early and influenced by variations in socioeconomic status (SES). It is unclear whether early-life SES influences child oral health directly, or indirectly through determinants such as intake of free sugars. This study applied the marginal structural modelling approach to household income at birth and free sugar intake to investigate pathways those determinants influence child oral health. Methods: We used data collected in SMILE, a population-based birth cohort study of Australian mother/newborn dyads, who have been followed-up prospectively since birth with questionnaires and clinical assessment. Area- and individual-level factors collected at childbirth were background confounders. Household income at childbirth (Low/Medium/High) and free sugar intake at age two years (Low/Medium/High) were used as primary exposure and mediator to investigate pathways through which SES at childbirth influences oral health. By applying the causal inference approach and using marginal structural modelling, we estimated the controlled direct effect of household income and the direct effect and mediating effect of intake of free sugars on dental caries experience. We developed a causal directed acyclic graph to guide the analysis. The baseline confounders were balanced using a stabilised inverse probabilities of treatment weight, mimicking randomisation. Results: Low household income at childbirth was associated with 1.65 (95%CI: 1.01, 3.02) times higher accumulated dental caries experience by age five years than in children born to high-income households. High intake of free sugars had strong direct effects on both the prevalence (1.55 (95%CI: 1.03, 2.32)) and cumulative experience (2.64 (95%CI: 1.36, 5.15)) of dental caries by age five years. Proportions of effects of income were mediated by intake of free sugars. Conclusion: Socioeconomic variations at birth and immediate determinants such as intake of sugars, directly and indirectly, influence oral health. Timely and appropriate addressing of those variations may limit inequity in oral health.
DOI: 10.6084/m9.figshare.29063642.v1
title: Sorghum virgatum genome

description: Sorghum virgatum genome
DOI: 10.60893/figshare.jap.28189931.v1
title: atomic coordinates

description: atomic coordinates file
DOI: 10.17632/99hz92ysph
title: Data for: The Asymmetric relationship between financial development, trade openness, foreign capital flows, and renewable energy consumption: Fresh evidence from Panel NARDL investigation

description: Data pertinent to renewable energy consumption, trade openness, financial developent : Panel data
DOI: 10.6084/m9.figshare.22580416.v1
title: <b>Following the feeder: A global synthesis of disturbance-based foraging associations of birds Dataset</b>

description: The dataset used in the paper Following the feeder: A global synthesis of disturbance-based foraging associations of birds, Dominguez et al., Journal of Animal Ecology. <br>
DOI: 10.6084/m9.figshare.25778103.v1
title: Environmental Data

description: Climate model data of marine layers (Sea Surface Temperature, Sea Surface Salinity, Sea Ice Cover, and Sea Ice Thickness) for the years 11,700 BP to 2020 CE that has been downscaled to 1.0ºx1.0º, masked to ocean areas 45ºN and above, and then calculated a 35-year running average on. Unprocessed climate model data is originally from Armstrong et al. (https://www.nature.com/articles/s41597-019-0277-1) and has been processed in the same manner as Westbury et al. (https://www.biorxiv.org/content/10.1101/2024.04.10.588858v1).
DOI: 10.6084/m9.figshare.25651674.v1
title: Supplementary Material for Scalable Contract Design.xlsx

description: external market price coefficient and internal parameters of users.
DOI: 10.6084/m9.figshare.28334486.v1
title: Data for manuscript “Climate action contributor and carbon space appropriator: national image construction of China in dual-carbon commitment from Indian media's perspective” in journal H & SSC

description: This is the dataset for the manuscript, including news reports from three mainstream Indian media.
DOI: 10.5281/zenodo.10949807
title: On the Moreau–Jean scheme with the Frémond impact law: energy conservation and dissipation properties for elastodynamics with contact, impact and friction — data

description: This deposit contains the data output of the systems described in On the Moreau–Jean scheme with the Frémond impact law. Energy conservation and dissipation properties for elastodynamics with contact impact and friction. The codes that generated this data are available in another deposit archived on Zenodo, as well as in a GitHub repository archived on Software Heritage, which is the preferred method of obtaining the codes. Two of the files in this deposit ("deformed_sliding_block_mesh.png" and "sliding_block_mesh.png") are required for one of the codes in the code deposit to run successfully ("block_mesh_plot.py", with the files assumed to be located in the folder specified in the data_folder variable of the file "path_file.py"), but the deposits are otherwise independent.
DOI: 10.34740/kaggle/dsv/12818698
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.ghp5n9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenothera tetraptera",
 "Country is Zimbabwe",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025771-250811113504898/datasets/export for details.
DOI: 10.5281/zenodo.14752891
title: Additional Data from: Machine Learning for Enhanced Identification Probability in RPLC/HRMS Non-Targeted Workflows

description: §  Additional file 1

A spreadsheet with a list of compounds used to train the pre-trained model, the molecular fingerprint-to-retention time index (MF-to-RTI) model.

§  Additional file 2

A spreadsheet with a list of pre-selected cumulative neutral loss (CNL) masses-of-interest and their corresponding quantities.

§  Additional file 3

A spreadsheet with a list of compounds and their corresponding quantities of tandem mass spectra used for training the cumulative neutral loss-to-retention time index (CNL-to-RTI) model.

§  Additional file 4

A spreadsheet file with 3 sheets with a list of true RTI values of compound calibrants used in Model 1’s training and testing with publicly available MS/MS spectra, accompanying the predicted values from Models 1 and 2, and the RTI error from their true values for training (sheet 1), testing (sheet 2), and assessing the calibrants with RTIs from different systems (sheet 3).

§  Additional file 5

A spreadsheet file with 4 sheets collecting all reference MS/MS spectral matching results for the compound Pencycuron in various degrees of black tea matrix (sheet 1, summary; sheet 2, data for samples with no tea matrix; sheet 3, data for samples with the 100x-diluted matrix; sheet 3, data for samples with the 10x-diluted matrix).
DOI: 10.5281/zenodo.16402775
title: Additional Data from: Machine Learning for Enhanced Identification Probability in RPLC/HRMS Non-Targeted Workflows

description: §  Additional file 1

A spreadsheet with a list of compounds used to train the pre-trained model, the molecular fingerprint-to-retention time index (MF-to-RTI) model.

§  Additional file 2

A spreadsheet with a list of pre-selected cumulative neutral loss (CNL) masses-of-interest and their corresponding quantities.

§  Additional file 3

A spreadsheet with a list of compounds and their corresponding quantities of tandem mass spectra used for training the cumulative neutral loss-to-retention time index (CNL-to-RTI) model.

§  Additional file 4

A spreadsheet file with 3 sheets with a list of true RTI values of compound calibrants used in Model 1’s training and testing with publicly available MS/MS spectra, accompanying the predicted values from Models 1 and 2, and the RTI error from their true values for training (sheet 1), testing (sheet 2), and assessing the calibrants with RTIs from different systems (sheet 3).

§  Additional file 5

A spreadsheet file with 4 sheets collecting all reference MS/MS spectral matching results for the compound Pencycuron in various degrees of black tea matrix (sheet 1, summary; sheet 2, data for samples with no tea matrix; sheet 3, data for samples with the 100x-diluted matrix; sheet 3, data for samples with the 10x-diluted matrix).
DOI: 10.15468/dl.cdj74c
title: Occurrence Download

description: A dataset containing 331482 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Asparagus Tourn. ex L."
 ]
}

 The dataset includes 331482 records from 1914 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017378-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26377903
title: EdgeHOG: a method for fine-grained ancestral gene order inference at large scale

description: This repository contains all the scripts and datasets (simulations, YGOB, OMA Vertebrata species) used for the benchmarking of EdgeHOG. It all also contains the data and scripts used for downstream analyses, i.e the functional annotation of reconstructed contigs in LECA, the sequences of the HOGs in LECA’s contigs having more than two genes, the study of the conservation of LECA's adjacencies in extant eukaryotes and the dating of gene adjacencies in extant eukaryotes (along with plots with dated adjacencies for 706 eukaryotic genomes)
DOI: 10.6084/m9.figshare.26377903.v1
title: EdgeHOG: a method for fine-grained ancestral gene order inference at large scale

description: This repository contains all the scripts and datasets (simulations, YGOB, OMA Vertebrata species) used for the benchmarking of EdgeHOG. It all also contains the data and scripts used for downstream analyses, i.e the functional annotation of reconstructed contigs in LECA, the sequences of the HOGs in LECA’s contigs having more than two genes, the study of the conservation of LECA's adjacencies in extant eukaryotes and the dating of gene adjacencies in extant eukaryotes (along with plots with dated adjacencies for 706 eukaryotic genomes)
DOI: 10.15468/dl.c25x62
title: Occurrence Download

description: A dataset containing 40772 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex acetosella L.",
 "Country is Belgium"
 ]
}

 The dataset includes 40772 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010300-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kaenmv
title: Occurrence Download

description: A dataset containing 1715 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ceiba pentandra",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1715 records from 199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005005-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djygwf
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cephalohibiscus peekelii",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005007-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18449142
title: ABOLITIONISMINTHENORTHANDTHESOUTHOFAMERICAINTHE19THCENTURY

description: This article presents a comprehensive literary and historical analysis of abolitionism in the Northern and Southern United States during the nineteenth century. Abolitionism is examined not as a unified national movement but as a regionally differentiated ideological phenomenon shaped by distinct economic systems, social structures, and cultural values. The study emphasizes the crucial role of literature as a medium through which abolitionist and anti-abolitionist ideas were articulated, disseminated, and contested.

       The primary objective of the research is to identify and compare the ideological foundations of Northern abolitionist discourse and Southern pro-slavery rhetoric, with particular attention to their representation in literary texts. The article seeks to demonstrate how literature functioned both as a reflection of historical realities and as an active instrument of moral persuasion and ideological resistance. In the Northern states, abolitionist literature emerged as a powerful force aimed at mobilizing public opinion against slavery, while in the Southern states literary and political discourse largely served to justify and preserve the slaveholding system.

      Methodologically, the study adopts an interdisciplinary qualitative approach that combines historical analysis, comparative literary criticism, and discourse analysis. Primary sources include abolitionist novels, autobiographical narratives, essays, and pro-slavery texts, while secondary sources consist of scholarly works in American history and literary studies. This methodological framework enables a balanced examination of abolitionism as both a socio-political movement and a cultural-literary phenomenon.

     The discussion highlights significant thematic and rhetorical contrasts between Northern and Southern texts. Northern abolitionist writers employed sentimentalism, realism, and moral argumentation to expose the brutality of slavery and evoke empathy for enslaved individuals. In contrast, Southern discourse constructed an idealized image of plantation life, emphasizing paternalism, racial hierarchy, and social stability, while portraying abolitionism as a dangerous and radical ideology.

      The results of the study demonstrate that literature played a decisive role in deepening sectional divisions and intensifying ideological polarization in the decades preceding the American Civil War. By revealing how competing literary narratives shaped regional identities and moral worldviews, the article underscores the scholarly value of abolitionist literature as a vital source for understanding nineteenth-century American history and culture.