cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19382216.v1
title: Supplementary Material for: Sociodemographic, Clinical, Lifestyle and Psychological Correlates of Peripheral Neuropathy among 2–12-Year Colorectal Cancer Survivors

description: Background Peripheral neuropathy (PN) is a debilitating complication among colorectal cancer (CRC) survivors that can become chronic. No large-scale study has yet analyzed correlates in multivariable models. We did multivariable analyses to find correlates of PN. Methods In 1,516 all-stage Dutch CRC survivors, cross-sectional data were collected on sensory, motor, autonomic and total PN, sociodemographic (age, sex, education, employment, partner), clinical (time since diagnosis, tumor location, stage, chemotherapy, radiotherapy, co-morbidities), lifestyle (alcohol, smoking, physical activity, body mass index), psychological factors (anxiety, depression, personality) and health-related quality of life (HRQoL). After multiple imputation, correlates were analyzed with linear regressions and eliminated with backwards selection. Results CRC survivors (69 years; 42% female) were on average five years post-diagnosis, and 28-65% reported PN. PN was associated with older age, being male (sensory) or female (motor), shorter time since diagnosis, chemotherapy, co-morbidities, anxiety, depression, and worse scores on HRQoL domains, and pain, nausea, vomiting, insomnia, constipation and financial problems. Conclusions In multivariable analyses, PN is affected by receiving chemotherapy, aging, sex, co-morbidities, stress-related factors and HRQoL in CRC survivors. Future PN-related studies can include these factors, and they can be examined in longitudinal studies to gain more knowledge about chronicity and severity of PN.
DOI: 10.18742/25043606.v1
title: Social media, Smartphone use and Self-Harm (3S-YP) study data

description: The Social media, Smartphone use and Self-Harm (3S-YP) study is a prospective observational cohort study to investigate the associations between social media and smartphone use and self-harm in young people. Young people aged 13–25 years old from secondary mental health services were recruited and followed for up to 6 months. Data collected in the study includes questionnaire data and data extracted from electronic health records (EHR) and user generated data sources.
DOI: 10.6084/m9.figshare.23266070.v1
title: Supplementary Material for: Evaluation of a dementia training course for staff of a center of dementia care

description: Introduction: Literature shows poor dementia training and competencies among health and social professionals. Due to the growing prevalence of people with dementia and all the related care demands, specialized training is increasingly needed but must be effective in terms of impact on knowledge, behaviours and attitudes. We aimed to analyse the impact of a first-level dementia training course for staff of a new specialized center for people with dementia, considering the first three levels of Kirkpatrick’s evaluation framework, namely staff reaction (satisfaction), skills and learning (knowledge and dementia attitudes), and behaviour changes. Methods: Single-center group pre-post design study of a 12-session online course. An online questionnaire was administered to measure satisfaction, expectations, knowledge/learning, attitudes (Dementia Attitude Scale) and new behaviours/practices. We compared perceived knowledge (Wilcoxon signed-rank test) and attitudes (paired T-test). Thematic analysis explored new behaviours/practices. Results: 85 professionals and 1 volunteer were included (median age 31, 92% female). Satisfaction with the training was high (median 4/5). Perceived knowledge improved (median 3 to 4; p˂0.001). The knowledge test median score was 70.8%. After training, participants showed better attitudes towards dementia (mean 116.5, SD 10.3 to mean 122.2, SD 11.5; p˂0.001). Most (93%) said their behaviour/practice changed. Thematic analysis yielded four new behaviour/practice dimensions: knowledge, care provision/interaction, communication, family/caregivers, self-confidence and importance of physical environment. Conclusions: The course improved all dimensions evaluated, suggesting it effectively provides first-level dementia training. This may be transferable to similar settings.
DOI: 10.6084/m9.figshare.7619135.v1
title: Supplementary Material for: Clinical Outcomes of Arteriovenous Access in Incident Hemodialysis Patients with Medicare Coverage, 2012–2014

description: <b><i>Background:</i></b> Chronic hemodialysis requires a mode of vascular access through an arteriovenous fistula (AVF), a prosthetic arteriovenous graft (AVG), or a central venous catheter (CVC). AVF is recommended over AVG or CVC due to increased patency and decreased intervention rates for those that mature. AVG are preferred over CVC due to decreased infection and mortality risk. The aims of this study were to evaluate the lifespan of AVF and AVG in maturation, sustained access use, and abandonment. <b><i>Methods:</i></b> The United States Renal Data System (USRDS), Medicare claims, and CROWNWeb were used to identify access placements. Patients with a first end-stage renal disease (ESRD) service from January 1, 2012 to June 30, 2014 with continuous coverage with Medicare as primary payer and ≥1 AVF or AVG placed after ESRD onset were included. Maturation was defined as the first use of the access for hemodialysis recorded in CROWNWeb. Sustained access use was defined as 3 consecutive months of use without catheter placement or replacement. Accesses that were never used at any time post-placement were considered abandoned. <b><i>Results:</i></b> The cohort included 38,035 AVF placements and 12,789 AVG placements. Sixty-nine percent of AVF and 72% of AVG matured. Fifty-two percent of AVF and 51% of AVG achieved sustained access use. One quarter of AVF and 14% of AVG were abandoned without use as recorded in CROWNWeb. <b><i>Conclusion:</i></b> Although considered the gold standard for vascular access, only half of AVF and AVG placements achieved sustained access use. The USRDS database has inherent limitations but provides useful clinical insight into maturation, sustained use, and abandonment.
DOI: 10.6084/m9.figshare.14195969.v1
title: Study3_FS2021.sav

description: Study 3 where video conditions were used to assess impact of nature and urban spaces (with and without people) on social wellbeing.
DOI: 10.6084/m9.figshare.16888459.v2
title: Variation of 4 MV X-ray dose rate in fractionated irradiation strongly impacts biological endothelial cell response <i>in vitro</i>

description: Even though X-ray beams are widely used in medical diagnosis or radiotherapy, the comparisons of their dose rates are scarce. We have recently demonstrated in vitro (clonogenic assay, cell viability, cell cycle, senescence) and in vivo (weight follow-up of animals and bordering epithelium staining of lesion), that for a single dose of irradiation, the relative biological effectiveness (RBE) deviates from 1 (up to twofold greater severe damage at the highest dose rate depending on the assay) when increasing the dose rate of high energy X-ray beams. To further investigate the impact of the dose rate on RBE, in this study, we performed in vitro fractionated irradiations by using the same two dose rates (0.63 and 2.5 Gy.min<sup>−1</sup>) of high-energy X-rays (both at 4 MV) on normal endothelial cells (HUVECs). We investigated the viability/mortality, characterized radiation-induced senescence by using flow cytometry and measured gene analysis deregulations on custom arrays. The overall results enlighten that, in fractionated irradiations when varying the dose rate of high-energy X-rays, the RBE of photons deviates from 1 (up to 2.86 for viability/mortality experiments performed 21 days postirradiation). These results strengthen the interest of multiparametric analysis approaches in providing an accurate evaluation of the outcomes of irradiated cells in support of clonogenic assays, especially when such assays are not feasible.
DOI: 10.6084/m9.figshare.5660800.v1
title: Additional file 8 of OMSV enables accurate and comprehensive identification of large structural variations from nanochannel-based single-molecule optical maps

description: Pseudo-autosomal regions in hg38. This file provides the locations of pseudo-autosomal regions in the human reference genome hg38. (BED 0.078 kb)
DOI: 10.6084/m9.figshare.7380776.v1
title: Supplementary Material for: Molecular Epidemiology of <b><i>ALK</i></b> Rearrangements in Advanced Lung Adenocarcinoma in Latin America

description: <b><i>Objective:</i></b> Latin American countries are heterogeneous in terms of lung cancer incidence and exposure to potential carcinogens. We evaluated the frequency and clinical characteristics of <i>ALK</i> rearrangements (<i>ALKr</i>) in Latin America. <b><i>Methods:</i></b> A total of 5,130 lung cancer patients from 10 Latin American countries were screened for inclusion. <i>ALKr</i> detection was performed by fluorescence in situ hybridization (FISH), immunohistochemistry (IHC), and real-time reverse transcriptase-polymerase chain reaction (RT-PCR) to assess method variability. Demographic and clinicopathologic characteristics were analyzed. <b><i>Results:</i></b> Among the 5,130 patients screened, 8.4% (<i>n</i> = 433) had nonevaluable FISH tests. Evaluable FISH analyses revealed positive <i>ALKr</i> in 6.8% (320/4,697) of the study population, which included patients from 9 countries. <i>ALKr</i> distribution for each country was: Mexico 7.6% (79/1,034), Colombia 4.1% (10/242), Argentina 6.0% (153/2,534), Costa Rica 9.5% (13/137), Panama 4.4% (5/114), Uruguay 5.4% (2/37), Chile 8.6% (16/185), Venezuela 8.9% (13/146), and Peru 10.8% (29/268). RT-PCR showed high positive (83.6%) and negative (99.7%) predictive values when compared to the gold standard FISH. In contrast, IHC only showed a high negative predictive value (94.6%). <b><i>Conclusions:</i></b> Although there is a clear country and continental variability in terms of <i>ALKr</i> frequency, this difference is not significant and the overall incidence of <i>ALKr</i> in Latin America does not differ from the rest of the world.
DOI: 10.6084/m9.figshare.27651033.v1
title: pancreas_2019_subset

description: Subset of the pancreatic endocrinogenesis dataset (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132188)
DOI: 10.6084/m9.figshare.12649757.v2
title: processed QM9 (dense)

description: Processed dataset (dense graph) used in IncidenceNet
DOI: 10.6084/m9.figshare.13259891.v1
title: MS raw files for ''The half-life of the bone-derived hormone osteocalcin is regulated through O-glycosylation in mice, but not in humans''

description: This includes 6 mass spectrometry raw data files related to the manuscript <i>“<b>The half-life of the bone-derived hormone osteocalcin is regulated through O-glycosylation in mice, but not in humans</b>” </i>by Al Rifai et al.<b></b> Data format: ThermoFisher Scientific raw formatSoftware: Qual Browser (Thermo Xcalibur 4.0) List of files indicating the data each contains and the corresponding figure or table in the manuscript: <b>QE_20141210_OCN_01.raw</b> : top-down proteomic analysis on osteocalcin immunoprecipitated from mouse osteoblasts supernatant. Raw data corresponding to Table 2. <b>QE_20170612_FER_02_2.raw</b>: top-down proteomic analysis on osteocalcin immunoprecipitated from mouse bone homogenate. Raw data corresponding to Table 3 and Figure 1H. <b>QE_20190129_FER_01.raw: </b>Full mass spectrometry data of purified glycosylated mouse uncarboxylated OCN. Raw data corresponding to Figure 3A.<b></b> <b>QE_20190124_FER_01.raw:</b> Full mass spectrometry data of purified non-glycosylated mouse uncarboxylated OCN. Raw data corresponding to Figure 3B. <b>QE_20190411_FER_01_2.raw:</b> Full mass spectrometry data of purified glycosylated human uncarboxylated OCN. Raw data corresponding to Figure 5E. <b>QE_20190411_FER_02_2.raw</b>: Full mass spectrometry data of purified non-glycosylated human uncarboxylated OCN. Raw data corresponding to Figure 5F.
DOI: 10.6084/m9.figshare.26105017.v1
title: Genome assembly and annotation for faba bean (<i>Vica faba</i>) and common bean (<i>Phaseolus vulgaris</i>)

description: Genome assembly and annotation for faba bean (<i>Vica faba</i>) and common bean (<i>Phaseolus vulgaris</i>)
DOI: 10.6084/m9.figshare.12372014.v1
title: Abundance of sessile species in wave-exposed intertidal habitats along the Atlantic Canadian coast

description: Abundance (expressed as percent cover) of macroalgae and sessile invertebrates at the high and mid-intertidal zones of 8 wave-exposed locations spanning 415 km of the Atlantic coast of Nova Scotia, Canada (summer 2017).<br>
DOI: 10.6084/m9.figshare.19765672.v1
title: DataSPS.xlsx

description: Data used to develop a Social and Professional Stress (SPS) scale for parents of children with autism spectrum disorder
DOI: 10.17632/8dbhv9hc55
title: Dataset of physicochemical and microbiological analysis of drinking water samples in two rural communities of the Colombian Caribbean

description: Physicochemical and microbiological characterization of water samples for human consumption in households located in the El Cascajo and La Delfina villages
DOI: 10.6084/m9.figshare.21382419.v1
title: BIOL 3250 Data with Meta-Data Assignment for Balcony Birdwatching.xlsx

description: YORKU BIOL 3250: Data with Meta-Data Assignment for Balcony Birdwatching. In this data set each row on the data sheet represents a species level observation. For the sake of clarity, the field observations were coded as one species per behaviour per row. The purpose of collecting this data is to determine whether noise pollution and loud noises have an impact on the foraging behaviour of common urban birds. This experimental data was collected between October 6 th , 8th and 9th , 2022. The birds were observed from a balcony to maintain distance and to not interrupt their behavior but also to have a vantage point. Observations were taken within a 60-minute window between 4:30-5:30 p.m. EST on each date. The birds were observed with bare eyes and pictures were taken for species identification. The birds were identified using inaturalist and google reverse image search was used to confirm the identification. In order to measure any impact on foraging behaviour, the birds that were observed to forage were timed on how long they would forage before flying or moving away. This time spent was measured using a stopwatch and the average time in minutes per species was recorded in minutes. Since the site of observation remained constant, the dates of observation were chosen based on familiarity with the area so the birds could be observed in mild background noise (light traffic), medium background noise (traffic+ ice cream truck music), and loud background noise (loud music being played on a nearby field).
DOI: 10.17632/ypff9pyb6z
title: Urban Heat Island (UHI) by Local Weather Types (LWT) maps for Lisbon Metropolitan Area (LMA)

description: Urban Heat Island (UHI) by local weather types (LWT) maps for the Lisbon Metropolitan Area (LMA) are made available. 
These maps were derived from the Copernicus Land Monitoring Service climate variables dataset that contains hourly air temperature raster data for 100 European cities (2008-2017), namely Lisbon and part of its metropolitan area.
Fifteen raster GeoTIFF maps (Appendix 1) depicting UHI intensity by LWT in LMA are presented here. For each LWT, twenty-four hourly average UHI raster GeoTIFF maps are provided for each LWT (Appendix 2 to 16). 
Thermal summer: 
 Raster GeoTIFF maps with the name “SUmild_cloudy” represent average UHI on mild, cloudy and humid days with light rain and moderate NW winds.
 Raster GeoTIFF maps with the name “SUmildNW” depict average UHI on mild, sunny and humid  days with moderate NW and N winds.
 Raster GeoTIFF grids with the name “SUmildN” represent average UHI intensity on mild, sunny and humid days with strong N winds.
 Raster GeoTIFF maps with the name “SUhot” indicate average UHI on hot, sunny and humid summer days with moderate N winds.
 Raster GeoTIFF maps with the name “SUvhot” depict average UHI on very hot, sunny and humid days with moderate N winds. 

Thermal winter 
Raster GeoTIFF maps with the name “WcoldN” indicate average UHI on cold, cloudy and dry days with weak and variable winds, specially from N and NW.
Raster GeoTIFF grids with the name “WcoldSW” depict average UHI on cold, cloudy, rainy and dry days with moderate SW and W winds.
Raster GeoTIFF maps with the name “WvcoldN” represent average UHI on very cold, sunny and dry with moderate N winds.
Raster GeoTIFF maps with the name “WvcoldNE” represent average UHI on Very cold, sunny and dry with weak NE, E and N winds.

Thermal spring 
Raster GeoTIFF maps with the name “ScoldNW” represent average UHI on cold, cloudy and dry days with weak precipitation and moderate and variable winds, specially from NW, SW and W.
Raster GeoTIFF maps with the name “ScoldN” depict average UHI on cold with moderate cloud coverage, dry and with moderate N winds.
Raster GeoTIFF maps with the name “Smild” indicate average UHI on mild, sunny and humid spring days with moderate N winds.

Thermal autumn
Raster GeoTIFF grids with the name “Acold” indicate average UHI on cold, with moderate cloud cover and dry days with moderate N and NE winds.
Raster GeoTIFF maps with the name “Acool” indicate average UHI on cool, cloudy, humid and rainy days with moderate SW and W winds .
Raster GeoTIFF maps with the name “Amild” represent average UHI on mild, with moderate cloud cover, humid, with possibility of rain and weak N, NE and S winds.

Raster GeoTIFF maps representing hourly average UHI intensity by LWT (Appendix 2 to 16) share the same name but end with with the respective hour (example: “SUmild_cloudy_1am” - hourly average UHI intensity at 1 am on mild, cloudy and humid summer days). 

An ArcGIS symbology layer (∗.lyr), named “UHI_symbology”, is also provided.
DOI: 10.6084/m9.figshare.23598711.v1
title: Supplementary Material for: Adiponectin Levels in Inflammatory Bowel Disease – A Systematic Review and Meta-analysis

description: Introduction: Adipose tissue plays an important role in the pathogenesis of inflammatory conditions. The role of adipokines in inflammatory bowel disease (IBD) has been evaluated in the current literature with conflicting results. The aim of this study was to evaluate adiponectin levels in IBD patients, including Crohn's disease (CD) and ulcerative colitis (UC), compared to controls, as well as further subgroup analyses. Hence, assessing the potential role of adiponectin as a surrogate marker. Methods: We performed a systematic electronic search on PubMed, EMBASE, Scopus and Cochrane Library, including observational or interventional studies evaluating serum or plasma adiponectin levels in IBD patients on humans. The primary summary outcome was the mean difference (MD) in serum or plasma adiponectin levels between IBD patients vs. controls. Subgroups analyses were conducted involving adiponectin levels in CD and UC compared to controls, as well as CD compared to UC. Results: A total of 20 studies were included in our qualitative synthesis and 14 studies in our quantitative synthesis, with a total population sample of 2,085 subjects. No significant MD in serum adiponectin levels was observed between IBD patients vs. controls (-1.331 [95% CI -3.135–0.472]), UC patients vs. controls (-0.213 [95% CI -1.898–1.472]), and CD patients vs. controls (-0.851 [95% CI -2.263–0.561]). Nevertheless, a significant MD was found between UC patients vs. CD patients (0.859 [95% CI 0.097–1.622]). Conclusions: Serum adiponectin levels were not able to differentiate between IBD, UC and CD patients compared to controls. However, significantly higher serum adiponectin levels were observed in UC compared to CD patients.
DOI: 10.6084/m9.figshare.25415206.v1
title: Road Surface Type Dataset of Kenya

description: Road Surface Type Dataset of Kenya
DOI: 10.6084/m9.figshare.13303121.v2
title: 2020-03 US COVID-19 vaccine questionnaire

description: Questionnaire and dataset and code for an analysis of COVID-19 vaccination preferences.
DOI: 10.6084/m9.figshare.28844258.v1
title: Chemical and isotope data of brine deposits in the Jianghan Basin

description: A long-lived interaction between Li-bearing minerals and formation waters under certain temperatures during brine migration and storage is an important process for gaining a significant amount of Li enrichment in continental evaporite basins.
DOI: 10.6084/m9.figshare.23582829.v1
title: Development and Validation of a Risk Score System for Early Prediction of Venous Thromboembolism in Patients with Lung Cancer

description: The data collected included: patient identification (medical record number, year of hospitalization), demographic and clinicopathological data (age, gender, BMI, WHO status, smoking, hypertension, diabetes, dyslipidemia, coronary artery disease, heart failure, surgical history), biological data(blood cell count (White blood cells, Hemoglobin, Platelets), C-reactive Protein (CRP), creatinine), lung cancer data (stage of disease, histological type, TNM classification, length of follow-up, surgical treatment, chemotherapy, the regimen of chemotherapy (platinum-based chemotherapy), radiation), VTE data (occurrence of PE, the occurrence of DVT, the occurrence of DVT, time to onset of VTE).
DOI: 10.6084/m9.figshare.756087.v1
title: Evolutionary Systems Biology Homework Assignment

description: Homework assignment for Evolutionary Systems Biology course. For more information, please see: Evolutionary Systems Biology syllabus:<br>http://figshare.com/articles/Evolutionary_Systems_Biology_syllabus/756085 Course Content (slides):<br>http://syntheticdaisies.blogspot.com/p/evolutionary-systems-biology-course.html
DOI: 10.6084/m9.figshare.21996764.v1
title: Effects of vitamin E and selenium administration on transportation stress in pregnant dairy heifers - supplementary material

description: Ingredient and chemical composition of feed and circulating ESe results in this study
DOI: 10.6084/m9.figshare.28672877.v1
title: Computational Datasets for 'Nucleosome Spacing Can Fine-Tune Higher Order Chromatin Assembly'

description: Computational Datasets for 'Nucleosome Spacing Can Fine-Tune Higher Order Chromatin Assembly'
DOI: 10.17632/nr5fh8y7b8
title: Reduced partition function ratios of iron, magnesium, oxygen, and silicon isotopes in olivine: A GGA and GGA + U study

description: Data package associated with the manuscript “Reduced partition function ratios of iron, magnesium, oxygen, and silicon isotopes in olivine: A GGA and GGA + U study”. The data include bond lengths and β-factors depicted in the figures in the main text and supplementary material, as well as the calculated crystal data and phonon frequencies for all the minerals investigated in the present study.
DOI: 10.6084/m9.figshare.25472395.v1
title: DATASET. The Dilemma Between Industry 4.0 and Society 5.0: A Technological Evolution of Digital Transformation or a Humanitarian Revolution of Well-being?

description: This review study a bibliometric analysis was conducted at the Scopus database using keywords and classifying the research reports into the following five clusters. The research reports covered the period of analysis 2018-2024 and they are presented in alphabetical order of last name of first authors, followed by the descending order of publication: from the newest to the oldest. All clusters results have been presented in the form of Tables 1-5, having also the calculated subtotals presented in alignment with the years of publication per cluster.
DOI: 10.6084/m9.figshare.25658829.v7
title: F1000 Data DLIR NCCT Brain

description: AI model for improving image quality of CT brain