cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12300965
title: Oncidium phylogenetic analysis.zip

description: Genus <em>Oncidium Sw</em>. is widely regarded as a polyphiletic, and the taxonomic boundaries between him and such genera as <em>Odontoglossum</em> Kunth. or <em>Miltonia</em> Lindley remain blurred. The aim of the study was to determine the phylogenetic relationships within the genus <em>Oncidium</em> <em>s.lato</em> based on the DNA sequences analysis. The correlation between molecular data and geographical distribution of the studied species was also examined. Two markers were used for the analysis: the ITS sequence derived from the nuclear genome and the matK gene that is part of mitochondrial DNA. Sequences were obtained by DNA isolation from frozen leaves, polymerase chain reaction (PCR) and sequencing. For their analysis in the PAUP* program, a feature-based parsimony (MP) method was used, and for assessing the reliability of the resulting trees, the non-parametric bootstrap method. The ITS MP search resulted in 10 000 trees (CI=0.49; RI=0.631). The aligned matrix resulted in 814 characters of which 433 were parsimony informative. The matK MP search resulted in 10 000 trees (CI=0.505; RI=0.714). The aligned matrix resulted in 1359 characters of which 358 were parsimony informative. This dataset contains two image files with phylogenetic trees - the first one based on ITS analysis of 190 species and the second one based on the matK analysis of 154 species. The upper numbers above branches are the Fitch values and lower numbers are the bootstrap values. The information about geographical distribution is added. The dataset includes also two NEXUS files (for ITS and for matK) with DNA sequences.
DOI: 10.6084/m9.figshare.12300887
title: SARS-CoV s level 1 and level 2 human spreaders at high threshold

description: It contains interactions between SARS-CoV s level 1 & level 2 human spreaders at high threshold.<br>
DOI: 10.6084/m9.figshare.12300890
title: SARS-CoV2-Human level 1 spreaders as identified by Fuzzy PPI thresholding

description: It contains interactions between SARS-CoV2 and human level 1 spreaders.<br>
DOI: 10.6084/m9.figshare.12300881
title: SARS-CoV s level 1 and level 2 human spreaders at low threshold

description: It contains interactions between SARSCoV s level 1 & level 2 human spreaders at low threshold.<br>
DOI: 10.6084/m9.figshare.12300965.v1
title: Oncidium phylogenetic analysis.zip

description: Genus <em>Oncidium Sw</em>. is widely regarded as a polyphiletic, and the taxonomic boundaries between him and such genera as <em>Odontoglossum</em> Kunth. or <em>Miltonia</em> Lindley remain blurred. The aim of the study was to determine the phylogenetic relationships within the genus <em>Oncidium</em> <em>s.lato</em> based on the DNA sequences analysis. The correlation between molecular data and geographical distribution of the studied species was also examined. Two markers were used for the analysis: the ITS sequence derived from the nuclear genome and the matK gene that is part of mitochondrial DNA. Sequences were obtained by DNA isolation from frozen leaves, polymerase chain reaction (PCR) and sequencing. For their analysis in the PAUP* program, a feature-based parsimony (MP) method was used, and for assessing the reliability of the resulting trees, the non-parametric bootstrap method. The ITS MP search resulted in 10 000 trees (CI=0.49; RI=0.631). The aligned matrix resulted in 814 characters of which 433 were parsimony informative. The matK MP search resulted in 10 000 trees (CI=0.505; RI=0.714). The aligned matrix resulted in 1359 characters of which 358 were parsimony informative. This dataset contains two image files with phylogenetic trees - the first one based on ITS analysis of 190 species and the second one based on the matK analysis of 154 species. The upper numbers above branches are the Fitch values and lower numbers are the bootstrap values. The information about geographical distribution is added. The dataset includes also two NEXUS files (for ITS and for matK) with DNA sequences.
DOI: 10.6084/m9.figshare.12300965.v2
title: Oncidium phylogenetic analysis.zip

description: Genus <em>Oncidium Sw</em>. is widely regarded as a polyphiletic, and the taxonomic boundaries between him and such genera as <em>Odontoglossum</em> Kunth. or <em>Miltonia</em> Lindley remain blurred. The aim of the study was to determine the phylogenetic relationships within the genus <em>Oncidium</em> <em>s.lato</em> based on the DNA sequences analysis. The correlation between molecular data and geographical distribution of the studied species was also examined. Two markers were used for the analysis: the ITS sequence derived from the nuclear genome and the matK gene that is part of mitochondrial DNA. Sequences were obtained by DNA isolation from frozen leaves, polymerase chain reaction (PCR) and sequencing. For their analysis in the PAUP* program, a feature-based parsimony (MP) method was used, and for assessing the reliability of the resulting trees, the non-parametric bootstrap method. The ITS MP search resulted in 10 000 trees (CI=0.49; RI=0.631). The aligned matrix resulted in 814 characters of which 433 were parsimony informative. The matK MP search resulted in 10 000 trees (CI=0.505; RI=0.714). The aligned matrix resulted in 1359 characters of which 358 were parsimony informative. This dataset contains two image files with phylogenetic trees - the first one based on ITS analysis of 190 species and the second one based on the matK analysis of 154 species. The upper numbers above branches are the Fitch values and lower numbers are the bootstrap values. The information about geographical distribution is added. The dataset includes also two NEXUS files (for ITS and for matK) with DNA sequences.
DOI: 10.6084/m9.figshare.12300866
title: SARS-CoV spreaders and its level 1 human spreaders

description: It contains interactions between SARS-CoV spreaders and its level 1 human spreader proteins.<br>
DOI: 10.6084/m9.figshare.12300872
title: text_figures_tables.zip from Predicting left ventricular contractile function via Gaussian process emulation in aortic-banded rats

description: Cardiac contraction is the result of integrated cellular, tissue and organ function. Biophysical <i>in silico</i> cardiac models offer a systematic approach for studying these multi-scale interactions. The computational cost of such models is high, due to their multi-parametric and nonlinear nature. This has so far made it difficult to perform model fitting and prevented global sensitivity analysis (GSA) studies. We propose a machine learning approach based on Gaussian process emulation of model simulations using probabilistic surrogate models, which enables model parameter inference via a Bayesian history matching (HM) technique and GSA on whole-organ mechanics. This framework is applied to model healthy and aortic-banded hypertensive rats, a commonly used animal model of heart failure disease. The obtained probabilistic surrogate models accurately predicted the left ventricular pump function (R<sup>2</sup> = 0.92 for ejection fraction). The HM technique allowed us to fit both the control and diseased virtual bi-ventricular rat heart models to magnetic resonance imaging and literature data, with model outputs from the constrained parameter space falling within 2 SD of the respective experimental values. The GSA identified Troponin C and cross-bridge kinetics as key parameters in determining both systolic and diastolic ventricular function.This article is part of the theme issue ‘Uncertainty quantification in cardiac and cardiovascular modelling and simulation’.
DOI: 10.6085/aa/mb042x_042mtbd022r00_20040802.40.2
title: (:unkn)
DOI: 10.6085/aa/mb042x_042mtbd022r00_20040802.50.1
title: OCNMS: Physical Oceanography: moored temperature data: Makah Bay, Washington, USA (MB042)

description: This metadata record describes moored seawater temperature data collected at Makah Bay, Washington, USA, by OCNMS. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2004-08-02. The instrument depth was 022 meters, in an overall water depth of 42 meters (both relative to Mean Sea Level, MSL). The sampling interval was 10.0 minutes.
DOI: 10.6085/aa/mb042x_042mtbd022r00_20040802.50.2
title: OCNMS: Physical Oceanography: moored temperature data: Makah Bay, Washington, USA (MB042)

description: This metadata record describes moored seawater temperature data collected at Makah Bay, Washington, USA, by OCNMS. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2004-08-02. The instrument depth was 022 meters, in an overall water depth of 42 meters (both relative to Mean Sea Level, MSL). The sampling interval was 10.0 minutes.
DOI: 10.6085/aa/mb042x_042mtbd022r00_20040831.40.1
title: (:unkn)
DOI: 10.6085/aa/mb042x_042mtbd022r00_20040831.40.2
title: (:unkn)
DOI: 10.6085/aa/mb042x_042mtbd022r00_20040831.50.1
title: OCNMS: Physical Oceanography: moored temperature data: Makah Bay, Washington, USA (MB042)

description: This metadata record describes moored seawater temperature data collected at Makah Bay, Washington, USA, by OCNMS. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2004-08-31. The instrument depth was 022 meters, in an overall water depth of 42 meters (both relative to Mean Sea Level, MSL). The sampling interval was 10.0 minutes.
DOI: 10.6085/aa/mb042x_042mtbd022r00_20040831.50.4
title: OCNMS: Physical Oceanography: moored temperature data: Makah Bay, Washington, USA (MB042)

description: This metadata record describes moored seawater temperature data collected at Makah Bay, Washington, USA, by OCNMS. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2004-08-31. The instrument depth was 022 meters, in an overall water depth of 42 meters (both relative to Mean Sea Level, MSL). The sampling interval was 10.0 minutes.
DOI: 10.6085/aa/mb042x_042mtbd022r00_20050425.40.1
title: (:unkn)
DOI: 10.6085/aa/mb042x_042mtbd022r00_20050425.50.1
title: OCNMS: Physical Oceanography: moored temperature data: Makah Bay, Washington, USA (MB042)

description: This metadata record describes moored seawater temperature data collected at Makah Bay, Washington, USA, by OCNMS. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-04-25. The instrument depth was 022 meters, in an overall water depth of 42 meters (both relative to Mean Sea Level, MSL). The sampling interval was 2.0 minutes.
DOI: 10.6085/aa/mb042x_042mtbd022r00_20050425.50.2
title: OCNMS: Physical Oceanography: moored temperature data: Makah Bay, Washington, USA (MB042)

description: This metadata record describes moored seawater temperature data collected at Makah Bay, Washington, USA, by OCNMS. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-04-25. The instrument depth was 022 meters, in an overall water depth of 42 meters (both relative to Mean Sea Level, MSL). The sampling interval was 2.0 minutes.
DOI: 10.6085/aa/mb042x_042mtbd022r00_20050425.50.5
title: OCNMS: Physical Oceanography: moored temperature data: Makah Bay, Washington, USA (MB042)

description: This metadata record describes moored seawater temperature data collected at Makah Bay, Washington, USA, by OCNMS. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-04-25. The instrument depth was 022 meters, in an overall water depth of 42 meters (both relative to Mean Sea Level, MSL). The sampling interval was 2.0 minutes.
DOI: 10.6085/aa/mb042x_042mtbd022r00_20050531.40.2
title: (:unkn)
DOI: 10.6085/aa/mb042x_042mtbd022r00_20050531.50.1
title: OCNMS: Physical Oceanography: moored temperature data: Makah Bay, Washington, USA (MB042)

description: This metadata record describes moored seawater temperature data collected at Makah Bay, Washington, USA, by OCNMS. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-05-31. The instrument depth was 022 meters, in an overall water depth of 42 meters (both relative to Mean Sea Level, MSL). The sampling interval was 2.0 minutes.
DOI: 10.6085/aa/mb042x_042mtbd022r00_20050531.50.4
title: OCNMS: Physical Oceanography: moored temperature data: Makah Bay, Washington, USA (MB042)

description: This metadata record describes moored seawater temperature data collected at Makah Bay, Washington, USA, by OCNMS. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-05-31. The instrument depth was 022 meters, in an overall water depth of 42 meters (both relative to Mean Sea Level, MSL). The sampling interval was 2.0 minutes.
DOI: 10.6085/aa/mb042x_042mtbd022r00_20050531.50.6
title: OCNMS: Physical Oceanography: moored temperature data: Makah Bay, Washington, USA (MB042)

description: This metadata record describes moored seawater temperature data collected at Makah Bay, Washington, USA, by OCNMS. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-05-31. The instrument depth was 022 meters, in an overall water depth of 42 meters (both relative to Mean Sea Level, MSL). The sampling interval was 2.0 minutes.
DOI: 10.6085/aa/mb042x_042mtbd022r00_20050627.40.2
title: (:unkn)
DOI: 10.6085/aa/mb042x_042mtbd022r00_20050627.50.3
title: OCNMS: Physical Oceanography: moored temperature data: Makah Bay, Washington, USA (MB042)

description: This metadata record describes moored seawater temperature data collected at Makah Bay, Washington, USA, by OCNMS. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-06-27. The instrument depth was 022 meters, in an overall water depth of 42 meters (both relative to Mean Sea Level, MSL). The sampling interval was 2.0 minutes.
DOI: 10.6085/aa/mb042x_042mtbd022r00_20050627.50.4
title: OCNMS: Physical Oceanography: moored temperature data: Makah Bay, Washington, USA (MB042)

description: This metadata record describes moored seawater temperature data collected at Makah Bay, Washington, USA, by OCNMS. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-06-27. The instrument depth was 022 meters, in an overall water depth of 42 meters (both relative to Mean Sea Level, MSL). The sampling interval was 2.0 minutes.
DOI: 10.6085/aa/mb042x_042mtbd022r00_20050803.40.1
title: (:unkn)
DOI: 10.6085/aa/mb042x_042mtbd022r00_20050803.40.2
title: (:unkn)
DOI: 10.6085/aa/ssm001_022mtbd000r00_20050721.40.1
title: (:unkn)
DOI: 10.6085/aa/ssm001_022mtbd000r00_20050721.50.2
title: PISCO: Physical Oceanography: moored temperature data: San Simeon, California, USA (SSM001)

description: This metadata record describes moored seawater temperature data collected at San Simeon, California, USA, by PISCO. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-07-22. The instrument depth was 000 meters, in an overall water depth of 22 meters (both relative to Mean Sea Level, MSL). The sampling interval was 2.0 minutes.
DOI: 10.6085/aa/ssm001_022mtbd000r00_20050902.40.1
title: (:unkn)
DOI: 10.6085/aa/ssm001_022mtbd000r00_20050902.50.2
title: PISCO: Physical Oceanography: moored temperature data: San Simeon, California, USA (SSM001)

description: This metadata record describes moored seawater temperature data collected at San Simeon, California, USA, by PISCO. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-09-02. The instrument depth was 000 meters, in an overall water depth of 22 meters (both relative to Mean Sea Level, MSL). The sampling interval was 2.0 minutes.
DOI: 10.6085/aa/ssm001_022mtbd000r00_20050902.50.3
title: PISCO: Physical Oceanography: moored temperature data: San Simeon, California, USA (SSM001)

description: This metadata record describes moored seawater temperature data collected at San Simeon, California, USA, by PISCO. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-09-02. The instrument depth was 000 meters, in an overall water depth of 22 meters (both relative to Mean Sea Level, MSL). The sampling interval was 2.0 minutes.
DOI: 10.6085/aa/ssm001_022mtbd000r00_20050902.50.4
title: PISCO: Physical Oceanography: moored temperature data: San Simeon, California, USA (SSM001)

description: This metadata record describes moored seawater temperature data collected at San Simeon, California, USA, by PISCO. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-09-02. The instrument depth was 000 meters, in an overall water depth of 22 meters (both relative to Mean Sea Level, MSL). The sampling interval was 2.0 minutes.
DOI: 10.6085/aa/ssm001_022mtbd000r00_20051019.40.2
title: (:unkn)
DOI: 10.6085/aa/ssm001_022mtbd000r00_20051019.50.4
title: PISCO: Physical Oceanography: moored temperature data: San Simeon, California, USA (SSM001)

description: This metadata record describes moored seawater temperature data collected at San Simeon, California, USA, by PISCO. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-10-19. The instrument depth was 000 meters, in an overall water depth of 22 meters (both relative to Mean Sea Level, MSL). The sampling interval was 2.0 minutes.
DOI: 10.6085/aa/ssm001_022mtbd000r00_20051019.50.5
title: PISCO: Physical Oceanography: moored temperature data: San Simeon, California, USA (SSM001)

description: This metadata record describes moored seawater temperature data collected at San Simeon, California, USA, by PISCO. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-10-19. The instrument depth was 000 meters, in an overall water depth of 22 meters (both relative to Mean Sea Level, MSL). The sampling interval was 2.0 minutes.
DOI: 10.6085/aa/ssm001_022mtbd000r00_20051204.40.1
title: (:unkn)
DOI: 10.6085/aa/ssm001_022mtbd000r00_20051204.50.2
title: PISCO: Physical Oceanography: moored temperature data: San Simeon, California, USA (SSM001)

description: This metadata record describes moored seawater temperature data collected at San Simeon, California, USA, by PISCO. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-12-04. The instrument depth was 000 meters, in an overall water depth of 22 meters (both relative to Mean Sea Level, MSL). The sampling interval was -14.2 minutes.
DOI: 10.6085/aa/ssm001_022mtbd000r00_20051204.50.3
title: PISCO: Physical Oceanography: moored temperature data: San Simeon, California, USA (SSM001)

description: This metadata record describes moored seawater temperature data collected at San Simeon, California, USA, by PISCO. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-12-04. The instrument depth was 000 meters, in an overall water depth of 22 meters (both relative to Mean Sea Level, MSL). The sampling interval was -14.2 minutes.
DOI: 10.6085/aa/ssm001_022mtbd000r00_20051204.50.5
title: PISCO: Physical Oceanography: moored temperature data: San Simeon, California, USA (SSM001)

description: This metadata record describes moored seawater temperature data collected at San Simeon, California, USA, by PISCO. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-12-04. The instrument depth was 000 meters, in an overall water depth of 22 meters (both relative to Mean Sea Level, MSL). The sampling interval was -14.2 minutes.
DOI: 10.6085/aa/ssm001_022mtbd000r00_20060220.40.1
title: (:unkn)
DOI: 10.6085/aa/ssm001_022mtbd000r00_20060220.50.1
title: PISCO: Physical Oceanography: moored temperature data: San Simeon, California, USA (SSM001)

description: This metadata record describes moored seawater temperature data collected at San Simeon, California, USA, by PISCO. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2006-02-20. The instrument depth was 000 meters, in an overall water depth of 22 meters (both relative to Mean Sea Level, MSL). The sampling interval was 4.0 minutes.
DOI: 10.6085/aa/ssm001_022mtbd000r00_20060220.50.3
title: PISCO: Physical Oceanography: moored temperature data: San Simeon, California, USA (SSM001)

description: This metadata record describes moored seawater temperature data collected at San Simeon, California, USA, by PISCO. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2006-02-20. The instrument depth was 000 meters, in an overall water depth of 22 meters (both relative to Mean Sea Level, MSL). The sampling interval was 4.0 minutes.
DOI: 10.6085/aa/ssm001_022mtbd000r00_20060504.40.1
title: (:unkn)
DOI: 10.6085/aa/ssm001_022mtbd000r00_20060504.50.2
title: PISCO: Physical Oceanography: moored temperature data: San Simeon, California, USA (SSM001)

description: This metadata record describes moored seawater temperature data collected at San Simeon, California, USA, by PISCO. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBIC32+4+27) beginning 2006-05-04. The instrument depth was 000 meters, in an overall water depth of 22 meters (both relative to Mean Sea Level, MSL). The sampling interval was 4.0 minutes.
DOI: 10.6085/aa/ssm001_022mtbd000r00_20060504.50.5
title: PISCO: Physical Oceanography: moored temperature data: San Simeon, California, USA (SSM001)

description: This metadata record describes moored seawater temperature data collected at San Simeon, California, USA, by PISCO. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBIC32+4+27) beginning 2006-05-04. The instrument depth was 000 meters, in an overall water depth of 22 meters (both relative to Mean Sea Level, MSL). The sampling interval was 4.0 minutes.
DOI: 10.6085/aa/ssm001_022mtbd000r00_20060720.40.2
title: (:unkn)
DOI: 10.6085/aa/argxxx_015mtbd003r00_20090212.40.1
title: (:unkn)
DOI: 10.6085/aa/argxxx_015mtbd003r00_20110803.50.1
title: PISCO: Physical Oceanography: moored temperature data: Point Arguello, California, USA (ARGXXX)

description: This metadata record describes moored seawater temperature data collected at Point Arguello, California, USA, by PISCO. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBIC32+4+27) beginning 2011-08-03. The instrument depth was 003 meters, in an overall water depth of 15 meters (both relative to Mean Sea Level, MSL). The sampling interval was 4.0 minutes.
DOI: 10.6085/aa/argxxx_015mtbd009r00_19990525.40.2
title: (:unkn)
DOI: 10.6085/aa/mb042x_042mtbd022r00_20050531.50.5
title: OCNMS: Physical Oceanography: moored temperature data: Makah Bay, Washington, USA (MB042)

description: This metadata record describes moored seawater temperature data collected at Makah Bay, Washington, USA, by OCNMS. Measurements were collected using a StowAway Tidbit Temperature Logger (Onset Computer Corp. TBI32-05+37) beginning 2005-05-31. The instrument depth was 022 meters, in an overall water depth of 42 meters (both relative to Mean Sea Level, MSL). The sampling interval was 2.0 minutes.
DOI: 10.6085/aa/mb042x_042mtbd022r00_20050627.40.1
title: (:unkn)