cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11871102.v1
title: Row Data Day 20-Plasminogen_2.fq.gz

description: Row data for mRNA sequensing of sample from radiation wounds treated with plasminogen for 20 days.
DOI: 10.6084/m9.figshare.11871087
title: Row Data Day 0-1fq.gz

description: Row data for mRNA sequensing of sample from radiation wounds before treatment.
DOI: 10.6084/m9.figshare.11871090
title: Row Data Day 20-PBS_2.fq.gz

description: Row data for mRNA sequensing of sample from radiation wounds treated with PBS for 20 days.
DOI: 10.6084/m9.figshare.11871096.v1
title: Row Data Day 20-PBS_1.fq.gz

description: Row data for mRNA sequensing of sample from radiation wounds treated with PBS for 20 days.
DOI: 10.6084/m9.figshare.11871090.v1
title: Row Data Day 20-PBS_2.fq.gz

description: Row data for mRNA sequensing of sample from radiation wounds treated with PBS for 20 days.
DOI: 10.6084/m9.figshare.11871084
title: Supplementary Material for: Publication Patterns of Presentations at the 16th Quadrennial Meeting of the World Society for Stereotactic and Functional Neurosurgery

description: <b><i>Background:</i></b> The quality of a scientific meeting can be quantified by the rate of full publications arising from the presented abstracts and the impact factor of the journals in which the studies were published. <b><i>Objectives:</i></b> The aim of this study was to investigate the publication rates of presentations from the 2013 World Society for Stereotactic and Functional Neurosurgery (WSSFN) quadrennial meeting. <b><i>Methods:</i></b> Scopus and PubMed databases were searched for the authors of the presentations to identify full publications arising from the relevant abstracts. Author and content matching were used to match an abstract with a full publication. Mann-Whitney U and Kruskal-Wallis tests were used for statistical analysis. <b><i>Results:</i></b> In total, 77% (57/74), 56% (44/79), and 50% (79/157) of the paper, flash, and poster presentations, respectively, have been published, with an overall publication rate of 58% (180/310). Articles received a total of 5,227 citations, with an average of 29 ± 64.1 citations per article. The first authors who published their studies had a significantly higher <i>h</i>-index than those who did not publish (<i>p</i> = 0.003). The most preferred journals for publication were <i>Journal of Neurosurgery</i>, <i>Acta Neurochirurgica,</i> and <i>Stereotactic and Functional Neurosurgery.</i> The majority of the articles (117/180 [65%]) were published in a quartile 1 or 2 journal. The average journal impact factor (JIF) was 4.5 for all presentations, and 7.8 for paper session presentations. Studies presented in paper sessions were published in significantly higher-impact factor journals than those presented in poster sessions (<i>p</i> &lt; 0.001). <b><i>Conclusions:</i></b> The WSSFN Congress had a relatively high overall publication rate (58%) compared to both other neurosurgical congresses and congresses in other scientific fields. The average JIF of 7.8 is a reflection of the high quality and high impact of the paper session presentations.
DOI: 10.6084/m9.figshare.11871084.v1
title: Supplementary Material for: Publication Patterns of Presentations at the 16th Quadrennial Meeting of the World Society for Stereotactic and Functional Neurosurgery

description: <b><i>Background:</i></b> The quality of a scientific meeting can be quantified by the rate of full publications arising from the presented abstracts and the impact factor of the journals in which the studies were published. <b><i>Objectives:</i></b> The aim of this study was to investigate the publication rates of presentations from the 2013 World Society for Stereotactic and Functional Neurosurgery (WSSFN) quadrennial meeting. <b><i>Methods:</i></b> Scopus and PubMed databases were searched for the authors of the presentations to identify full publications arising from the relevant abstracts. Author and content matching were used to match an abstract with a full publication. Mann-Whitney U and Kruskal-Wallis tests were used for statistical analysis. <b><i>Results:</i></b> In total, 77% (57/74), 56% (44/79), and 50% (79/157) of the paper, flash, and poster presentations, respectively, have been published, with an overall publication rate of 58% (180/310). Articles received a total of 5,227 citations, with an average of 29 ± 64.1 citations per article. The first authors who published their studies had a significantly higher <i>h</i>-index than those who did not publish (<i>p</i> = 0.003). The most preferred journals for publication were <i>Journal of Neurosurgery</i>, <i>Acta Neurochirurgica,</i> and <i>Stereotactic and Functional Neurosurgery.</i> The majority of the articles (117/180 [65%]) were published in a quartile 1 or 2 journal. The average journal impact factor (JIF) was 4.5 for all presentations, and 7.8 for paper session presentations. Studies presented in paper sessions were published in significantly higher-impact factor journals than those presented in poster sessions (<i>p</i> &lt; 0.001). <b><i>Conclusions:</i></b> The WSSFN Congress had a relatively high overall publication rate (58%) compared to both other neurosurgical congresses and congresses in other scientific fields. The average JIF of 7.8 is a reflection of the high quality and high impact of the paper session presentations.
DOI: 10.6084/m9.figshare.11871057
title: Supplementary Material for: Cognitive Remediation Therapy Does Not Enhance Treatment Effect in Obsessive-Compulsive Disorder and Anorexia Nervosa: A Randomized Controlled Trial

description: <b><i>Background:</i></b> Guideline-recommended therapies are moderately successful in the treatment of obsessive-compulsive disorder (OCD) and anorexia nervosa (AN), leaving room for improvement. Cognitive inflexibility, a common trait in both disorders, is likely to prevent patients from engaging in treatment and from fully benefiting from existing therapies. Cognitive remediation therapy (CRT) is a practical augmentation intervention aimed at ameliorating this impairing cognitive style prior to disorder-specific therapy. <b><i>Objective:</i></b> To compare the effectiveness of CRT and a control treatment that was not aimed at enhancing flexibility, named specialized attention therapy (SAT), as add-ons to treatment as usual (TAU). <b><i>Methods:</i></b> In a randomized controlled multicenter clinical trial, 71 adult patients with OCD and 61 with AN were randomized to ten twice-weekly sessions with either CRT or SAT, followed by TAU. Patients were evaluated at baseline, post-CRT/SAT, and after 6 and 12 months, with outcomes being quantified using the Yale-Brown Obsessive Compulsive Scale for OCD and the Eating Disorder Examination Questionnaire for AN. <b><i>Results:</i></b> Across study groups, most importantly CRT+TAU was not superior to control treatment (SAT)+TAU in reducing OCD and AN pathology. Contrary to expectations, SAT+TAU may have been more effective than CRT+TAU in patients being treated for OCD. <b><i>Conclusions:</i></b> CRT did not enhance the effect of TAU for OCD and AN more than SAT. Unexpectedly, SAT, the control condition, may have had an augmentation effect on TAU in OCD patients. Although this latter finding may have been due to chance, the effect of SAT delivered as a pretreatment add-on intervention for adults with OCD and AN merits future efforts at replication.
DOI: 10.6084/m9.figshare.11871045
title: Supplementary Material for: Association Analysis of Tumor Necrosis Factor Alpha Promoter Polymorphisms and Vitiligo Susceptibility in South Indian Tamils

description: Tumor necrosis factor alpha (TNF-α) has been associated with the pathogenesis of several autoimmune diseases. Also, various studies in different ethnics showed an association between TNF-α gene polymorphisms and susceptibility to vitiligo. The paucity of genetic data led us to undertake this study to evaluate the association of five TNF-α SNPs (rs1799964, rs1800630, rs1799724, rs1800629, and rs361525) with the development of vitiligo in South Indian Tamils. A total of 264 vitiligo patients and 264 healthy controls were recruited and TNF-α genotyping was performed using amplification-refractory mutation system polymerase chain reaction and TaqMan allele discrimination assay. Circulatory TNF-α levels were measured by enzyme-linked immunosorbent assay. We observed that a single polymorphic allele A in the promoter region -308 (rs1800629) conferred significant risk to develop vitiligo (<i>p</i> = 0.0002, OR = 1.70, 95% CI = 1.28–2.25), whereas the other polymorphisms failed to contribute to disease risk (<i>p</i> &gt; 0.05). From the constructed haplotypes, TCCAG was found to be a significant risk factor for vitiligo (<i>p</i> &lt; 0.05). Also, a strong linkage disequilibrium was observed between the following SNPs: (1) rs1799964 and rs1800629 (2) rs1800630 and rs1799724 (D’ = 0.90). Analysis of the influence of genotype on phenotypes revealed that the A allele of rs361525 was a risk factor for vitiligo in females (<i>p</i> = 0.04, OR = 0.45, 95% CI = 0.21–0.95), whilst the rs1800629 allele conferred protection against early disease onset (<i>p</i> &lt; 0.05). A statistically significant difference in plasma TNF-α levels was found between cases and controls (<i>p</i> &lt; 0.05). The TNF-α -308A allele and TCCAG haplotype were identified as genetic risk factors for vitiligo susceptibility in South Indian Tamils.
DOI: 10.6084/m9.figshare.11871057.v1
title: Supplementary Material for: Cognitive Remediation Therapy Does Not Enhance Treatment Effect in Obsessive-Compulsive Disorder and Anorexia Nervosa: A Randomized Controlled Trial

description: <b><i>Background:</i></b> Guideline-recommended therapies are moderately successful in the treatment of obsessive-compulsive disorder (OCD) and anorexia nervosa (AN), leaving room for improvement. Cognitive inflexibility, a common trait in both disorders, is likely to prevent patients from engaging in treatment and from fully benefiting from existing therapies. Cognitive remediation therapy (CRT) is a practical augmentation intervention aimed at ameliorating this impairing cognitive style prior to disorder-specific therapy. <b><i>Objective:</i></b> To compare the effectiveness of CRT and a control treatment that was not aimed at enhancing flexibility, named specialized attention therapy (SAT), as add-ons to treatment as usual (TAU). <b><i>Methods:</i></b> In a randomized controlled multicenter clinical trial, 71 adult patients with OCD and 61 with AN were randomized to ten twice-weekly sessions with either CRT or SAT, followed by TAU. Patients were evaluated at baseline, post-CRT/SAT, and after 6 and 12 months, with outcomes being quantified using the Yale-Brown Obsessive Compulsive Scale for OCD and the Eating Disorder Examination Questionnaire for AN. <b><i>Results:</i></b> Across study groups, most importantly CRT+TAU was not superior to control treatment (SAT)+TAU in reducing OCD and AN pathology. Contrary to expectations, SAT+TAU may have been more effective than CRT+TAU in patients being treated for OCD. <b><i>Conclusions:</i></b> CRT did not enhance the effect of TAU for OCD and AN more than SAT. Unexpectedly, SAT, the control condition, may have had an augmentation effect on TAU in OCD patients. Although this latter finding may have been due to chance, the effect of SAT delivered as a pretreatment add-on intervention for adults with OCD and AN merits future efforts at replication.
DOI: 10.6084/m9.figshare.11870976
title: Supplementary Materials

description: Supplementary Table 1. 2233 genes with variance importance in projection score &gt; 1.5.Supplementary Table 2. Enrichment analysis of transcription factors based on T peripheral helper cells signature genes.Supplementary Table 3-5. Enrichment analysis of Gene Ontology Biological Process (3), Molecular Function (4) and Cellular Component (5) based on T peripheral helper cells signature genes.
DOI: 10.6084/m9.figshare.11870973
title: Proteome database of Enterobacter cloacae EcWSU1

description: <i>Enterobacter cloacae</i> is a Gram-negative facultative anaerobic bacterium of clinical significance. A member of the gut microbiota, certain strains of <i>E. cloacae</i> is known to cause disease, which explains why there is increasing attention on understanding its pathophysiology. This work seeks to provide basic proteomic information of the bacterium by parsing the UniProt proteome file of <i>E. cloacae</i> ECWSU1 using an in-house MATLAB proteome analysis software. Overall, the presented proteome database should be useful in guiding genome editing experiments to understand how loss of function of particular genes affect pathogenesis of this emerging human pathogen. <br><br>
DOI: 10.6084/m9.figshare.11870976.v1
title: Supplementary Materials

description: Supplementary Table 1. 2233 genes with variance importance in projection score &gt; 1.5.Supplementary Table 2. Enrichment analysis of transcription factors based on T peripheral helper cells signature genes.Supplementary Table 3-5. Enrichment analysis of Gene Ontology Biological Process (3), Molecular Function (4) and Cellular Component (5) based on T peripheral helper cells signature genes.
DOI: 10.6084/m9.figshare.11870946
title: Patterns of inquiry-based science instruction and student science achievement in PISA 2015

description: Scientific literacy is a central aim of science education. The <i>Programme for International Student Assessment</i> (PISA) provides a measure of secondary students’ scientific literacy and reported science instruction in 72 countries. Researchers have analyzed PISA data to identify important relationships between science instruction and students’ science achievement. The purpose of this study is to further explore these relationships by using PISA 2015 data from a sample of 13 participating countries representing a range of mean science achievement. We use Latent Profile Analysis (LPA) to explore how students from highest- and lowest-performing profiles characterize the inquiry-based science instruction they experience. We then use cluster analysis to compare patterns in inquiry-based instruction reported by students in the highest-performing profiles in each country and examine relationships between inquiry-based and other instructional practices. Findings from our analysis reveal fundamental differences in the frequency and nature of inquiry-based instruction reported by students associated with the highest and lowest levels of science achievement. For the highest performing profiles of students, results illustrate both consistencies and unique features of science instruction students report across four distinct clusters of countries. We discuss implications of these results for theory, research, and the design of science learning environments.
DOI: 10.6084/m9.figshare.11870943
title: Low-cost emerging technologies as a tool to support informal environmental education in children from vulnerable public schools of southern Chile

description: Reform to the Chilean educational system seeks to improve public education, adapting the school curriculum to new technologies and the information revolution. Our study focused on highlighting potential issues with environmental and technological education, offering opportunities to complement the current Chilean curriculum with an interdisciplinary approach. During a five-week period interspersed through the school semester, 115 underprivileged children in seventh grade from five public schools of southern Chile participated in workshops based on Arduino technology to address current environmental problems caused by global change and anthropization. Surveys were conducted to participating students and included both open and closed-ended questions, which measured attitudes and perceptions towards science and the use of technology in classrooms and daily lives. Surveys were analysed quantitatively with basic statistics and qualitatively by building semantic networks of the relationships between different concepts expressed by the students. Results did not show significant changes in attitudes towards science or technology before and after the workshops but students reported mixed feelings about science. Indifference and fear emerged, coupled with the need for more interactive experiences. Curiosity and enthusiasm also surfaced when students were using new technologies. Since the school curriculum is generally focused exclusively towards the completion of specific curricular aims, highly vulnerable schools in Chile have few opportunities to access interactive, hands-on activities. Low-cost, emergent technologies, such Arduinos, have a high potential for improving student's attitude towards science and technology and their use should be considered when tailoring school curriculum in Chile and elsewhere.
DOI: 10.6084/m9.figshare.11870946.v1
title: Patterns of inquiry-based science instruction and student science achievement in PISA 2015

description: Scientific literacy is a central aim of science education. The <i>Programme for International Student Assessment</i> (PISA) provides a measure of secondary students’ scientific literacy and reported science instruction in 72 countries. Researchers have analyzed PISA data to identify important relationships between science instruction and students’ science achievement. The purpose of this study is to further explore these relationships by using PISA 2015 data from a sample of 13 participating countries representing a range of mean science achievement. We use Latent Profile Analysis (LPA) to explore how students from highest- and lowest-performing profiles characterize the inquiry-based science instruction they experience. We then use cluster analysis to compare patterns in inquiry-based instruction reported by students in the highest-performing profiles in each country and examine relationships between inquiry-based and other instructional practices. Findings from our analysis reveal fundamental differences in the frequency and nature of inquiry-based instruction reported by students associated with the highest and lowest levels of science achievement. For the highest performing profiles of students, results illustrate both consistencies and unique features of science instruction students report across four distinct clusters of countries. We discuss implications of these results for theory, research, and the design of science learning environments.
DOI: 10.6084/m9.figshare.11870976.v2
title: Supplementary Materials

description: Supplementary Table 1. 2233 genes with variance importance in projection score &gt; 1.5.Supplementary Table 2. Enrichment analysis of transcription factors based on T peripheral helper cells signature genes.Supplementary Table 3-5. Enrichment analysis of Gene Ontology Biological Process (3), Molecular Function (4) and Cellular Component (5) based on T peripheral helper cells signature genes.
DOI: 10.6084/m9.figshare.11870943.v1
title: Low-cost emerging technologies as a tool to support informal environmental education in children from vulnerable public schools of southern Chile

description: Reform to the Chilean educational system seeks to improve public education, adapting the school curriculum to new technologies and the information revolution. Our study focused on highlighting potential issues with environmental and technological education, offering opportunities to complement the current Chilean curriculum with an interdisciplinary approach. During a five-week period interspersed through the school semester, 115 underprivileged children in seventh grade from five public schools of southern Chile participated in workshops based on Arduino technology to address current environmental problems caused by global change and anthropization. Surveys were conducted to participating students and included both open and closed-ended questions, which measured attitudes and perceptions towards science and the use of technology in classrooms and daily lives. Surveys were analysed quantitatively with basic statistics and qualitatively by building semantic networks of the relationships between different concepts expressed by the students. Results did not show significant changes in attitudes towards science or technology before and after the workshops but students reported mixed feelings about science. Indifference and fear emerged, coupled with the need for more interactive experiences. Curiosity and enthusiasm also surfaced when students were using new technologies. Since the school curriculum is generally focused exclusively towards the completion of specific curricular aims, highly vulnerable schools in Chile have few opportunities to access interactive, hands-on activities. Low-cost, emergent technologies, such Arduinos, have a high potential for improving student's attitude towards science and technology and their use should be considered when tailoring school curriculum in Chile and elsewhere.
DOI: 10.6084/m9.figshare.11870799
title: Additional file 3 of Identification of proteins from the secretory/excretory products (SEPs) of the branchiuran ectoparasite Argulus foliaceus (Linnaeus, 1758) reveals unique secreted proteins amongst haematophagous ecdysozoa

description: Additional file 3: Table S3. OmicsBOx (Blast2Go) analysis, using whole NCBI as Blast search and InterProscan for protein function assignment.
DOI: 10.6084/m9.figshare.11870799.v1
title: Additional file 3 of Identification of proteins from the secretory/excretory products (SEPs) of the branchiuran ectoparasite Argulus foliaceus (Linnaeus, 1758) reveals unique secreted proteins amongst haematophagous ecdysozoa

description: Additional file 3: Table S3. OmicsBOx (Blast2Go) analysis, using whole NCBI as Blast search and InterProscan for protein function assignment.
DOI: 10.6084/m9.figshare.11870793
title: Additional file 2 of Identification of proteins from the secretory/excretory products (SEPs) of the branchiuran ectoparasite Argulus foliaceus (Linnaeus, 1758) reveals unique secreted proteins amongst haematophagous ecdysozoa

description: Additional file 2: Table S2. Argulus foliaceus positive hits.
DOI: 10.6084/m9.figshare.11870793.v1
title: Additional file 2 of Identification of proteins from the secretory/excretory products (SEPs) of the branchiuran ectoparasite Argulus foliaceus (Linnaeus, 1758) reveals unique secreted proteins amongst haematophagous ecdysozoa

description: Additional file 2: Table S2. Argulus foliaceus positive hits.
DOI: 10.6084/m9.figshare.11870787
title: Additional file 1 of Identification of proteins from the secretory/excretory products (SEPs) of the branchiuran ectoparasite Argulus foliaceus (Linnaeus, 1758) reveals unique secreted proteins amongst haematophagous ecdysozoa

description: Additional file 1: Table S1. All the hits initially returned by the MS with highlights to those that fell below the MASCOT assigned score of 35 which indicates a P-value &lt; 0.05, hits above 35 that did not meet validation criteria and proteins identified as positive as they pass all criteria.
DOI: 10.6084/m9.figshare.11870787.v1
title: Additional file 1 of Identification of proteins from the secretory/excretory products (SEPs) of the branchiuran ectoparasite Argulus foliaceus (Linnaeus, 1758) reveals unique secreted proteins amongst haematophagous ecdysozoa

description: Additional file 1: Table S1. All the hits initially returned by the MS with highlights to those that fell below the MASCOT assigned score of 35 which indicates a P-value &lt; 0.05, hits above 35 that did not meet validation criteria and proteins identified as positive as they pass all criteria.
DOI: 10.6084/m9.figshare.11870715
title: Additional file 1 of Effect of food limitation and reproductive activity on fecal glucocorticoid metabolite levels in banded mongooses

description: Additional file 1. Raw data for fecal glucocorticoid metabolites and candidate variables from free-ranging banded mongooses in northern Botswana.
DOI: 10.6084/m9.figshare.11870715.v1
title: Additional file 1 of Effect of food limitation and reproductive activity on fecal glucocorticoid metabolite levels in banded mongooses

description: Additional file 1. Raw data for fecal glucocorticoid metabolites and candidate variables from free-ranging banded mongooses in northern Botswana.