cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34808/8xt4-jt29
title: Neuroendocrine carcinoma, NOS - Female, 67 - Tissue image [6260730021889081]

description: This is the histopathological image of LIVER AND INTRAHEPATIC BILE DUCTS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 67Clinical description: Tumor of left lung. Enlarged retroperitoneal lymph nodes. Tumor of liver.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Neuroendocrine carcinoma, NOSResult of the histopathological examination: Metastasis of neuroendocrine carcinoma (probably from lung) to liver: CKAE1/AE3+ (dot-like), SYN+, CHR focally+, TTF1+, CK7 single cells +, CK20 single cells +, CDX2-, S100-,  LCA-, Ki-67 90%.Sample:Material: FFPECollecting method: Core-needle biopsyTopography: DIGESTIVE ORGANSOrgan: LIVER AND INTRAHEPATIC BILE DUCTSTissue: LiverType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/w531-tx18
title: Superficial spreading melanoma - Female, 38 - Tissue image [6260730021893131]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 38Clinical description: Brown lesion of skin of dorsum with dimensions 1,4 x 1,0 cm.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: NEVI AND MELANOMASDiagnosis: Superficial spreading melanomaResult of the histopathological examination: Superficial spreading melanoma: epithelioid cells, Clark III, Breslow 0,9 mm, mitotic index 4 mitoses/1mm2, TILs NON-BRISKSample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin of backType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34740/kaggle/dsv/3863809
title: Russian Invasion of Ukraine
DOI: 10.15151/esrf-es-771371370
title: The Israeli BAG

description: The BAG is quite large with 24 principal investigators covering almost all groups in Israel. The scientific topics are diverse and so different that depicting them in a short Abstract is extremely difficult. In this context BAG members are studying the parameters that govern protein assemblage, structural impacts of signaling processes in different cascades. There are several projects that are directed towards molecular recognition with implementation towards drug design. In addition, we still have the ribosome project and the design of unique antibiotics with specific functional interactions from the mycinamycins family and their resistance related mechanism compared with other macrolides and the photosystem and how it converts light into energy. Since Covid-19 is still a relevant topic as are other viral infections BAG members are and have been involved in the understanding of the infection process and the means to hinder it.
DOI: 10.15151/esrf-es-771453284
title: Danish Biochemistry and Structural biology BAG

description: This BAG application gathers many danish esrf users with the area of structural biochemistry (including both crystallography, cryoEM and SAXS). Some of the work focuses on carbohydrate active enzymes of all classes, with particular focus on biotechnological applications. Several PIs work in the important membrane proteins area, with both receptors and transporters as main focus, almost all potential or current drug targets. Other groups work on non membrane proteins which are also potential drug targets or in some way known to potentially be involved in disease - enzymes, bacterial antibiotic resistance and survival, DNA binding proteins and other regulators, immune system components. One crystallographic method development project is also included as are two principally bioSAXS projects. BioSAXS in addition contributes to several of the other projects, and infact we ask in this round for less Xtal beamtime and more bioSAXS beamtime.
DOI: 10.21227/k6zj-1027
title: 10 year PlaSim Simulation

description: 10 year simulation of GCM plasim on grid of 32x64 and 6 hour resolution
DOI: 10.57770/k6pijh
title: Effect of anisotropy on injection-induced damage in a slate geothermal reservoir

description: COMSOL input file of the benchmark problem
DOI: 10.6084/m9.figshare.20152871.v1
title: Dataset_effect of propolis on fat mass

description: <strong>Brazilian propolis intake improves body fat mass in community-dwelling elderly females</strong>
DOI: 10.34740/kaggle/dsv/3864023
title: Dutch News Articles
DOI: 10.5281/zenodo.6749204
title: Data Instances for: Who moves the locker? A benchmark study of alternative mobile parcel locker concepts

description: |C|_h.txt |C|: number of customers<br> h: instance |C|;|P|; |C|: number of customers<br> |P|: number of parking spaces Customer (c;size;max_dist;min_time;L;x_1;y_1;...;x_L;y_L;s_1;e_1;...;s_L;e_L) c: customer index <br> size: parcel size<br> max_dist: maximum walking distance<br> min_time: minimum overlap time<br> L: number of whereabouts<br> (x_i,y_i): position of whereabouts i<br> [s_i,e_i]: time window of whereabouts i Parking space (p;x;y)<br> p: parking space index <br> (x,y): position
DOI: 10.5281/zenodo.6749203
title: Data Instances for: Who moves the locker? A benchmark study of alternative mobile parcel locker concepts

description: |C|_h.txt |C|: number of customers<br> h: instance |C|;|P|; |C|: number of customers<br> |P|: number of parking spaces Customer (c;size;max_dist;min_time;L;x_1;y_1;...;x_L;y_L;s_1;e_1;...;s_L;e_L) c: customer index <br> size: parcel size<br> max_dist: maximum walking distance<br> min_time: minimum overlap time<br> L: number of whereabouts<br> (x_i,y_i): position of whereabouts i<br> [s_i,e_i]: time window of whereabouts i Parking space (p;x;y)<br> p: parking space index <br> (x,y): position
DOI: 10.17026/dans-2bc-ra57
title: Beuningen - De Hosterd

description: .
DOI: 10.17026/dans-27e-86n2
title: Bennekom - Boekelo Rioolsleuf

description: nvt
DOI: 10.15151/esrf-es-774880037
title: CryoEM-BAG France: Structural Biology using Cryo-EM in France

description: This proposal gathers Principal investigators from French Institutions that use cryo-EM to unravel the molecular mechanisms associated with various biological processes. Scientists belong to 8 centres that currently use Cryo-EM and have already used ESRF CM01 beamline. All the PIs in this application have submitted application in the two previous Rolling access applications and have or will soon collect data. Most of them will thus need Beam-time prior to august 2020. According to our listing, 14 projects are ready for data collection at ESRF CM01. Projects include the study of bacterial secretion systems (Bordeaux, Lyon, Paris), viruses and their infection mechanisms (Marseille), translation and its control (Bordeaux, Toulouse, Paris, Strasbourg), transcription (Strasbourg, Paris) and Macromolecular transport (Bordeaux, Lyon, Strasbourg).
DOI: 10.5281/zenodo.6749866
title: Code and data for An Upper Bound for Extreme Temperatures over Midlatitude Land

description: This .zip file contains data and Jupyter Notebooks to reproduce the results in "An Upper Bound for Extreme Temperatures over Midlatitude Land" by Zhang and Boos.
DOI: 10.5281/zenodo.6749865
title: Code and data for An Upper Bound for Extreme Temperatures over Midlatitude Land

description: This .zip file contains data and Jupyter Notebooks to reproduce the results in "An Upper Bound for Extreme Temperatures over Midlatitude Land" by Zhang and Boos.
DOI: 10.6084/m9.figshare.20153597
title: S2-pepSummary.xlsx

description: LC-MS analysis of NADPH oxidase isozymes in rice anthers
DOI: 10.6084/m9.figshare.20153597.v2
title: S2-pepSummary.xlsx

description: LC-MS analysis of NADPH oxidase isozymes in rice anthers
DOI: 10.6084/m9.figshare.20153597.v1
title: S2-pepSummary.xlsx

description: LC-MS analysis of NADPH oxidase isozymes in rice anthers
DOI: 10.6084/m9.figshare.20153600
title: S3.xlsx

description: A preliminary analysis of RNA-sequence data for the associated genes in the rice anthers of Nipponbare responsive to HT exposure.
DOI: 10.6084/m9.figshare.20153600.v1
title: S3.xlsx

description: A preliminary analysis of RNA-sequence data for the associated genes in the rice anthers of Nipponbare responsive to HT exposure.
DOI: 10.34820/fk2/i59hmq/2j1w10
title: Data Crawaling Tweeter_keyLobster.csv

description: This data is crawling data from Twitter social media with the keyword #lobster
DOI: 10.34820/fk2/i59hmq/68s5cy
title: Data Crawaling Tweeter_keyLobster.csv

description: This data is data taken through Twitter data crawling. This data uses the keyword lobster
DOI: 10.34820/fk2/i59hmq/o1eg3v
title: Scrapping data penjulan lobster pada ecommerce.csv

description: This data is lobster sales data in e-commerce. This data was taken using the scrapping method.
DOI: 10.34820/fk2/i59hmq
title: Replication Data for: Crawling data tweeter dengan kata kunci Lobster

description: This data is crawling data from Twitter social media with the keyword #lobster
DOI: 10.34740/kaggle/dsv/3864354
title: WallStreetBets 2022
DOI: 10.17026/dans-xbg-xwkg
title: Bergharen - Molenweg

description: .
DOI: 10.17026/dans-272-p2e7
title: PAN-00028094 - Late Medieval rotary key with bit 12 and kidney-shaped handle

description: This find is registered at Portable Antiquities of the Netherlands with number PAN-00028094
DOI: 10.17026/dans-x8j-87x3
title: PAN-00027262 - composite strongly profiled brooch A

description: This find is registered at Portable Antiquities of the Netherlands with number PAN-00027262
DOI: 10.17026/dans-xgk-c42x
title: PAN-00038333 - bow brooch with head-plate and cheeks-hinge group 1

description: This find is registered at Portable Antiquities of the Netherlands with number PAN-00038333
DOI: 10.17026/dans-xsr-j3yf
title: PAN-00041803 - Solid cross pendant group E2

description: This find is registered at Portable Antiquities of the Netherlands with number PAN-00041803
DOI: 10.6084/m9.figshare.15134553
title: Disentangling tumorigenesis-associated DNA methylation changes in colorectal tissues from those associated with ageing

description: Physiological ageing and tumorigenesis are both associated with epigenomic alterations in human tissue cells, the most extensively investigated of which entails de novo cytosine methylation (i.e., hypermethylation) within the CpG dinucleotides of CpG islands. Genomic regions that become hypermethylated during tumorigenesis are generally believed to overlap regions that acquire methylation in normal tissues as an effect of ageing. To define the extension of this overlap, we analysed the DNA methylomes of 48 large-bowel tissue samples taken from women of different ages during screening colonoscopy: 18 paired samples of normal and lesional tissues from donors harbouring a precancerous lesion and 12 samples of normal mucosa from tumour-free donors. Each sample was subjected to targeted, genome-wide bisulphite sequencing of ~2.5% of the genome, including all CpG islands. In terms of both its magnitude and extension along the chromatin, tumour-associated DNA hypermethylation in these regions was much more conspicuous than that observed in the normal mucosal samples from older (vs. younger) tumour-free donors. 83% of the ageing-associated hypermethylated regions (n = 2501) coincided with hypermethylated regions observed in tumour samples. However, 86% of the regions displaying hypermethylation in precancerous lesions (n = 16,772) showed no methylation changes in the ageing normal mucosa. The tumour-specificity of this latter hypermethylation was validated using published sets of data on DNA methylation in normal and neoplastic colon tissues. This extensive set of genomic regions displaying tumour-specific hypermethylation represents a rich vein of putative biomarkers for the early, non-invasive detection of colorectal tumours in women of all ages.
DOI: 10.6084/m9.figshare.15134553.v3
title: Disentangling tumorigenesis-associated DNA methylation changes in colorectal tissues from those associated with ageing

description: Physiological ageing and tumorigenesis are both associated with epigenomic alterations in human tissue cells, the most extensively investigated of which entails de novo cytosine methylation (i.e., hypermethylation) within the CpG dinucleotides of CpG islands. Genomic regions that become hypermethylated during tumorigenesis are generally believed to overlap regions that acquire methylation in normal tissues as an effect of ageing. To define the extension of this overlap, we analysed the DNA methylomes of 48 large-bowel tissue samples taken from women of different ages during screening colonoscopy: 18 paired samples of normal and lesional tissues from donors harbouring a precancerous lesion and 12 samples of normal mucosa from tumour-free donors. Each sample was subjected to targeted, genome-wide bisulphite sequencing of ~2.5% of the genome, including all CpG islands. In terms of both its magnitude and extension along the chromatin, tumour-associated DNA hypermethylation in these regions was much more conspicuous than that observed in the normal mucosal samples from older (vs. younger) tumour-free donors. 83% of the ageing-associated hypermethylated regions (n = 2501) coincided with hypermethylated regions observed in tumour samples. However, 86% of the regions displaying hypermethylation in precancerous lesions (n = 16,772) showed no methylation changes in the ageing normal mucosa. The tumour-specificity of this latter hypermethylation was validated using published sets of data on DNA methylation in normal and neoplastic colon tissues. This extensive set of genomic regions displaying tumour-specific hypermethylation represents a rich vein of putative biomarkers for the early, non-invasive detection of colorectal tumours in women of all ages.
DOI: 10.6084/m9.figshare.15134553.v2
title: Disentangling tumorigenesis-associated DNA methylation changes in colorectal tissues from those associated with ageing

description: Physiological ageing and tumorigenesis are both associated with epigenomic alterations in human tissue cells, the most extensively investigated of which entails de novo cytosine methylation (i.e., hypermethylation) within the CpG dinucleotides of CpG islands. Genomic regions that become hypermethylated during tumorigenesis are generally believed to overlap regions that acquire methylation in normal tissues as an effect of ageing. To define the extension of this overlap, we analysed the DNA methylomes of 48 large-bowel tissue samples taken from women of different ages during screening colonoscopy: 18 paired samples of normal and lesional tissues from donors harbouring a precancerous lesion and 12 samples of normal mucosa from tumour-free donors. Each sample was subjected to targeted, genome-wide bisulphite sequencing of ~2.5% of the genome, including all CpG islands. In terms of both its magnitude and extension along the chromatin, tumour-associated DNA hypermethylation in these regions was much more conspicuous than that observed in the normal mucosal samples from older (vs. younger) tumour-free donors. 83% of the ageing-associated hypermethylated regions (n = 2501) coincided with hypermethylated regions observed in tumour samples. However, 86% of the regions displaying hypermethylation in precancerous lesions (n = 16,772) showed no methylation changes in the ageing normal mucosa. The tumour-specificity of this latter hypermethylation was validated using published sets of data on DNA methylation in normal and neoplastic colon tissues. This extensive set of genomic regions displaying tumour-specific hypermethylation represents a rich vein of putative biomarkers for the early, non-invasive detection of colorectal tumours in women of all ages.
DOI: 10.34820/fk2/jnuzku/xvb6jt
title: Scrapping data penjulan lobster pada ecommerce.csv

description: This data is lobster sales data in e-commerce. This data was taken using the scrapping method.
DOI: 10.34820/fk2/jnuzku
title: Replication Data for: Data penjualan lobster pada ecommerce

description: This data is lobster sales data in e-commerce. This data was taken using the scrapping method.
DOI: 10.6084/m9.figshare.14206733.v1
title: Metabolic plasticity of <i>Salmonella enterica</i> as adaptation strategy in river water

description: The survival of <i>Salmonella</i> in subtropical river water depends on genetic and metabolic reorganization for the expression of alternative metabolic pathways in response to starvation, which allows <i>Salmonella</i> to use environmental carbon sources (C-sources). However, knowledge regarding the metabolic plasticity of <i>Salmonella</i> serotypes for C-source utilization when exposed to these conditions remains unclear. The aim of this study was to evaluate the metabolic response and level of environmental C-source consumption by environmental <i>Salmonella</i> (Oranienburg and Saintpaul) and clinical <i>Salmonella</i> (Typhi) serotypes by comparing laboratory growth against exposure to river water conditions. Metabolic characterization was performed using a Biolog® EcoPlate<sup>TM</sup> containing 31 C-sources. The results obtained under laboratory growth conditions showed that environmental serotypes used 74.1% of the C-sources, whereas the clinical serotype used 45.1%. In contrast, in river water, all strains used up to 96.7% of the C-sources. <i>Salmonella</i> exposure to river water increases its capacity to use environmental C-sources.
DOI: 10.6084/m9.figshare.14191167.v1
title: Loss of thermotolerance in antibiotic-resistant <i>Acinetobacter baumannii</i>

description: Bacterium <i>Acinetobacter baumannii</i> is a leading cause of nosocomial infections. The occurrence of antibiotic-resistant <i>A. baumannii</i> isolates outside hospitals suggests that monitoring of this pathogen in environmental samples is needed. Survival of pandrug-resistant <i>A. baumannii</i> was followed on selective plates with and without carbapenems in water and soil. After a few days of starvation, <i>A. baumannii</i> lost the ability to be cultivated at 44°C on plates supplemented with carbapenems. Once cultivated on plates without carbapenems and/or at 36°C, <i>A. baumannii</i> could grow again at 44°C in the presence of carbapenems. Comparative proteomic analysis revealed that impaired membrane integrity and reduced function of efflux pumps due to elevated temperature combined with antibiotic exposure were the main reasons for this phenomenon. Loss of thermotolerance in the presence of antibiotics points to the need for temperature adjustment in long-term monitoring of <i>A. baumannii</i> in environmental samples, to avoid the underestimation of viable bacteria.
DOI: 10.6084/m9.figshare.14206733
title: Metabolic plasticity of <i>Salmonella enterica</i> as adaptation strategy in river water

description: The survival of <i>Salmonella</i> in subtropical river water depends on genetic and metabolic reorganization for the expression of alternative metabolic pathways in response to starvation, which allows <i>Salmonella</i> to use environmental carbon sources (C-sources). However, knowledge regarding the metabolic plasticity of <i>Salmonella</i> serotypes for C-source utilization when exposed to these conditions remains unclear. The aim of this study was to evaluate the metabolic response and level of environmental C-source consumption by environmental <i>Salmonella</i> (Oranienburg and Saintpaul) and clinical <i>Salmonella</i> (Typhi) serotypes by comparing laboratory growth against exposure to river water conditions. Metabolic characterization was performed using a Biolog® EcoPlate<sup>TM</sup> containing 31 C-sources. The results obtained under laboratory growth conditions showed that environmental serotypes used 74.1% of the C-sources, whereas the clinical serotype used 45.1%. In contrast, in river water, all strains used up to 96.7% of the C-sources. <i>Salmonella</i> exposure to river water increases its capacity to use environmental C-sources.
DOI: 10.6084/m9.figshare.14191167
title: Loss of thermotolerance in antibiotic-resistant <i>Acinetobacter baumannii</i>

description: Bacterium <i>Acinetobacter baumannii</i> is a leading cause of nosocomial infections. The occurrence of antibiotic-resistant <i>A. baumannii</i> isolates outside hospitals suggests that monitoring of this pathogen in environmental samples is needed. Survival of pandrug-resistant <i>A. baumannii</i> was followed on selective plates with and without carbapenems in water and soil. After a few days of starvation, <i>A. baumannii</i> lost the ability to be cultivated at 44°C on plates supplemented with carbapenems. Once cultivated on plates without carbapenems and/or at 36°C, <i>A. baumannii</i> could grow again at 44°C in the presence of carbapenems. Comparative proteomic analysis revealed that impaired membrane integrity and reduced function of efflux pumps due to elevated temperature combined with antibiotic exposure were the main reasons for this phenomenon. Loss of thermotolerance in the presence of antibiotics points to the need for temperature adjustment in long-term monitoring of <i>A. baumannii</i> in environmental samples, to avoid the underestimation of viable bacteria.
DOI: 10.5517/ccdc.csd.cc2b03j0
title: CCDC 2145061: Experimental Crystal Structure Determination

description: Related Article: Dan-Na Song, Wen-Yan Li, Hong-Yun Wang, Jing Zhang, Dao-Jun Zhang, Jun-Jie Wang, Ji-Min Du, Ren-Chun Zhang, Yong-Lin An|2022|Inorg.Chem.|61|8662|doi:10.1021/acs.inorgchem.2c00312
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b03k1
title: CCDC 2145062: Experimental Crystal Structure Determination

description: Related Article: Dan-Na Song, Wen-Yan Li, Hong-Yun Wang, Jing Zhang, Dao-Jun Zhang, Jun-Jie Wang, Ji-Min Du, Ren-Chun Zhang, Yong-Lin An|2022|Inorg.Chem.|61|8662|doi:10.1021/acs.inorgchem.2c00312
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bmt2w
title: CCDC 2163988: Experimental Crystal Structure Determination

description: Related Article: Wisam A. Al Isawi, Matthias Zeller, Gellert Mezei|2022|Inorg.Chem.|61|8611|doi:10.1021/acs.inorgchem.2c01198
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.