cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1228054.08fu
title: SH1228054.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1228055.08fu
title: SH1228055.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1228056.08fu
title: SH1228056.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/th027739
title: TH027739
title: Triblidiaceae

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.6084/m9.figshare.22840529
title: Supplementary Material for: Cerebrovascular Pulsatility Index is Reduced in Autosomal Dominant Polycystic Kidney Disease

description: Introduction: Cerebrovascular dysfunction, characterized by increased brain pulsatile flow, reduced cerebrovascular reactivity, and cerebral hypoperfusion precedes the onset of dementia and is linked to cognitive dysfunction. Autosomal dominant polycystic kidney disease (ADPKD) may increase the risk of dementia, and intracranial aneurysms are more prevalent in ADPKD patients. However, cerebrovascular function has not been previously characterized in patients with ADPKD. Methods: Using transcranial Doppler, we compared middle cerebral artery (MCA) pulsatility index (PI; cerebrovascular stiffness) and MCA blood velocity response to hypercapnia (normalized for blood pressure and end-tidal CO2; cerebrovascular reactivity) in patients with early-stage ADPKD vs. age-matched healthy controls. We also administered the NIH cognitive toolbox (cognitive function) and measured carotid-femoral pulse-wave velocity (PWV; aortic stiffness). Results: Fifteen participants with ADPKD (9F, 27±4 yrs, eGFR: 106±22 ml/min/1.73m2) were compared to 15 healthy controls (8F, 29±4 yrs, eGFR: 109±14 ml/min/1.73m2). MCA PI was unexpectedly lower in ADPKD (0.71±0.07) vs. controls (0.82±0.09 A.U.; p&lt;0.001); however, normalized MCA blood velocity in response to hypercapnia did not differ between groups (2.0±1.2 vs. 2.1±0.8 %△/mmHg; p=0.85). Lower MCA PI was associated with a lower crystalized composite score (cognition), which persisted after adjustment for age, sex, eGFR, and education (β = 0.58, p=0.007). There was no association of MCA PI with carotid-femoral PWV (r=0.01, p=0.96), despite greater carotid-femoral PWV in ADPKD, suggesting MCA PI reflects vascular properties other than arterial stiffness (such as low wall shear stress) in ADPKD. Discussion/Conclusion: MCA PI is lower in patients with ADPKD. Follow-up research on this observation is merited, as low PI has been associated with intracranial aneurysm in other populations.
DOI: 10.6084/m9.figshare.23541204
title: Supplementary Material for: A Dietary Pattern for High Estimated Total Fat Amount Is Associated with Enhanced Allergy Sensitization and Atopic Diseases among Singapore/Malaysia Young Chinese Adults

description: <b><i>Introduction:</i></b> Frequent dietary patterns for fast food diets are suggested to be a risk factor for atopic disease development. Excessive dietary fats in fast foods are postulated to promote low-grade chronic inflammation. However, no studies in Asia have yet to characterize the dietary pattern for high-fat foods with atopic diseases. Thus, this study aims to assess the association between dietary fats with the prevalence of atopic diseases in an allergic cohort. <b><i>Methods:</i></b> Through an investigator-administered questionnaire that follows the International Study of Asthma and Allergies in Childhood (ISAAC) protocol, we evaluated the eating habits, lifestyle behaviours, sociodemographics, and atopic symptoms, and history among 11,494 young Chinese adults in Singapore and Malaysia. A skin prick test (SPT) for common house dust mites was also conducted to determine the atopic (allergic) status. We identified 1,550 atopic dermatitis (AD), 1,301 allergic asthma (AS), and 3,757 allergic rhinitis (AR) atopic cases. We derived a novel dietary index, Diet Quality based on Total Fat Amount (DQTFA), to examine the association between eating patterns for estimated total fat amount with various atopic outcomes. <b><i>Results:</i></b> There was a preponderance of subjects having positive SPT reaction (69.0%) with the prevalence of AR being the highest (32.7%), then AD (13.5%), and AS (11.3%). Additionally, there is a significantly higher proportion of subjects with an atopy background and atopic diseases consume diets with a high estimated mean fat amount. The adherence to a dietary pattern of the higher estimated total fat amount was shown to be strongly associated with all atopic diseases and exhibited dose-dependent responses in the univariate analysis. These associations remained significant even with the adjustments for age, gender, body mass index, use of alcohol, sedentary lifestyles, and physical activity. A dietary pattern for high-fat amount is more strongly associated with AS (adjusted odds ratio [AOR]: 1.524; 95% confidence interval [CI]: 1.216–1.725; <i>p</i> &lt; 0.001) and AR (AOR: 1.294; 95% CI: 1.107–1.512; <i>p</i> &lt; 0.001) compared to AD (AOR: 1.278; 95% CI: 1.049–1.559; <i>p</i> &lt; 0.05). Finally, it was shown that having either one of the atopic comorbidities was strongly associated with a dietary pattern of high-fat amounts (AOR: 1.360; 95% CI: 1.161–1.594; <i>p</i> &lt; 0.001). <b><i>Conclusion:</i></b> Our findings altogether provide initial evidence that the dietary pattern of a diet high in fat amount is associated with an increased risk of atopy and atopic diseases in young Chinese adults in Singapore and Malaysia. Balancing the consumption of dietary fats and changing personal dietary habits by choosing foods of the lower fat amount may reduce the associated odds of atopic diseases.
DOI: 10.6084/m9.figshare.23041943
title: Supplementary Material for: Differential unmet needs and experience of restorative dental care in trajectories of dental caries experience: a birth cohort study.

description: Dental caries is a chronic and cumulative disease but little has been reported on the continuity of the disease and its treatment through life. Group-based multi-trajectory modelling was used to identify developmental trajectories of untreated carious tooth surfaces (DS), restored tooth surfaces (FS), and teeth extracted due to caries (MT) from ages 9 to 45 years in a New Zealand longitudinal birth cohort, the Dunedin Multidisciplinary Health and Development Study (n=975). Associations between early life risk factors and trajectory group membership were examined by specifying the probability of group membership according to a multinomial logit model. Six trajectory groups were identified and labelled: ‘low caries rate’; ‘moderate caries rate, maintained’; ‘moderate caries rate, unmaintained’; ‘high caries rate, restored’; ‘high caries rate, tooth loss’; and ‘high caries rate, untreated caries’. The two moderate-caries-rate groups differed in count of FS. The three high-caries-rate groups differed in the relative proportion of accumulated DS, FS, and MT. Early childhood risk factors associated with less favourable trajectories included higher dmfs scores at age 5, lack of exposure to community water fluoridation during the first five years of life, lower childhood IQ, and low childhood socioeconomic status. Parent self-ratings of their own or their child’s oral health as ‘poor’ were associated with less favourable caries experience trajectories. Children who had clinical signs of dental caries together with a parent rating of child’s oral health as poor were more likely to follow a less favourable caries trajectory. Higher deciduous dentition caries experience at age 5 years was associated with less favourable caries trajectories, as were children whose parents gave ‘poor’ ratings of their own or their child’s oral health. These findings highlight the considerable intergenerational continuity in dental caries risk and experience from early childhood to midlife. Subjective measures of child oral health are informative and might aid as predictors of adult caries experience in cases where childhood dental clinical data were not available.
DOI: 10.6084/m9.figshare.23041943.v1
title: Supplementary Material for: Differential unmet needs and experience of restorative dental care in trajectories of dental caries experience: a birth cohort study.

description: Dental caries is a chronic and cumulative disease but little has been reported on the continuity of the disease and its treatment through life. Group-based multi-trajectory modelling was used to identify developmental trajectories of untreated carious tooth surfaces (DS), restored tooth surfaces (FS), and teeth extracted due to caries (MT) from ages 9 to 45 years in a New Zealand longitudinal birth cohort, the Dunedin Multidisciplinary Health and Development Study (n=975). Associations between early life risk factors and trajectory group membership were examined by specifying the probability of group membership according to a multinomial logit model. Six trajectory groups were identified and labelled: ‘low caries rate’; ‘moderate caries rate, maintained’; ‘moderate caries rate, unmaintained’; ‘high caries rate, restored’; ‘high caries rate, tooth loss’; and ‘high caries rate, untreated caries’. The two moderate-caries-rate groups differed in count of FS. The three high-caries-rate groups differed in the relative proportion of accumulated DS, FS, and MT. Early childhood risk factors associated with less favourable trajectories included higher dmfs scores at age 5, lack of exposure to community water fluoridation during the first five years of life, lower childhood IQ, and low childhood socioeconomic status. Parent self-ratings of their own or their child’s oral health as ‘poor’ were associated with less favourable caries experience trajectories. Children who had clinical signs of dental caries together with a parent rating of child’s oral health as poor were more likely to follow a less favourable caries trajectory. Higher deciduous dentition caries experience at age 5 years was associated with less favourable caries trajectories, as were children whose parents gave ‘poor’ ratings of their own or their child’s oral health. These findings highlight the considerable intergenerational continuity in dental caries risk and experience from early childhood to midlife. Subjective measures of child oral health are informative and might aid as predictors of adult caries experience in cases where childhood dental clinical data were not available.
DOI: 10.6084/m9.figshare.23040205
title: Serum biomarkers for monitoring response to tuberculosis treatment: an assessment of the effect of different covariates among slow and fast treatment responders

description: The long duration of tuberculosis treatment, as well as the 2-year post-treatment follow-up period often required for predicting relapse, present a hindrance to drug development and treatment monitoring efforts. Therefore, there is need for treatment response biomarkers to inform treatment time shortening, clinical decision-making, and inform clinical trials. To assess the abilities of serum host biomarkers to predict treatment response among active PTB patients. Active pulmonary TB patients (n = 53) as confirmed by sputum MGIT culture were enrolled at a TB treatment centre in Kampala, Uganda. We evaluated concentrations of 27 serum host biomarkers at baseline, month 2, and month 6 following the initiation of anti-tuberculosis treatment using the luminex platform for their ability to predict sputum culture status at month-2 post treatment initiation. There were significant differences in concentrations of IL1ra, IL1β, IL6, IP10, MCP-1, and IFNγ during treatment. A bio-signature comprising TTP, TNFα, PDGF-BB, IL9, and GCSF best predicted month 2 culture conversion with sensitivity and specificity of 82% (95% CI; 66 -92% and 57 -96% respectively). Slow anti-TB treatment responders had higher pro-inflammatory marker levels during treatment. The strongest correlation was observed between VEGF and IL12p70 (0.94), IL17A and basic FGF (0.92), basic FGF, and IL2 (0.88), and IL10 with IL17A (0.87). We identified host biomarkers that predicted early response to PTB treatment, which may be valuable in future clinical trials and treatment monitoring. Similarly, strong correlations between biomarkers provide options for biomarkers substitutions during the development of treatment response monitoring tools or point of care tests.
DOI: 10.6084/m9.figshare.23040205.v1
title: Serum biomarkers for monitoring response to tuberculosis treatment: an assessment of the effect of different covariates among slow and fast treatment responders

description: The long duration of tuberculosis treatment, as well as the 2-year post-treatment follow-up period often required for predicting relapse, present a hindrance to drug development and treatment monitoring efforts. Therefore, there is need for treatment response biomarkers to inform treatment time shortening, clinical decision-making, and inform clinical trials. To assess the abilities of serum host biomarkers to predict treatment response among active PTB patients. Active pulmonary TB patients (n = 53) as confirmed by sputum MGIT culture were enrolled at a TB treatment centre in Kampala, Uganda. We evaluated concentrations of 27 serum host biomarkers at baseline, month 2, and month 6 following the initiation of anti-tuberculosis treatment using the luminex platform for their ability to predict sputum culture status at month-2 post treatment initiation. There were significant differences in concentrations of IL1ra, IL1β, IL6, IP10, MCP-1, and IFNγ during treatment. A bio-signature comprising TTP, TNFα, PDGF-BB, IL9, and GCSF best predicted month 2 culture conversion with sensitivity and specificity of 82% (95% CI; 66 -92% and 57 -96% respectively). Slow anti-TB treatment responders had higher pro-inflammatory marker levels during treatment. The strongest correlation was observed between VEGF and IL12p70 (0.94), IL17A and basic FGF (0.92), basic FGF, and IL2 (0.88), and IL10 with IL17A (0.87). We identified host biomarkers that predicted early response to PTB treatment, which may be valuable in future clinical trials and treatment monitoring. Similarly, strong correlations between biomarkers provide options for biomarkers substitutions during the development of treatment response monitoring tools or point of care tests.
DOI: 10.4121/479b9031-a1f5-426c-b7a9-7e9225ce9536
title: Survey on Opportunity Management as part of Project Risk Management

description: The project to set-up the survey in this dataset was supported by the Association for Project Management (APM), and the survey has been sent sent to its corporate member organisations. The survey was intended to help to gain a better understanding of the policies and practice around Opportunity Management as a part of Project Risk Management. The survey has been designed and analysed by members of the APM Risk SIG and Delft University of Technology (The Netherlands). Results of the survey have been presented to APM to help the development of APM's documented approach to Project Risk Management in publications such as the APM Body of Knowledge and SIG Guides. In addition, anonymous and aggregated survey results are used for academic publications, providing more insight into the practice of Opportunity Management. The dataset contains:- Survey questions as they have been entered into Qualtrics (TM) [PDF]- Coding scheme that has been used to code the answers to the survey questions [PDF]- Raw answers to the survey questions (fully anonymized) [CSV]- Data Management Plan (DMP) for the survey as part of the HREC application [PDF]- HREC approval from TU Delft for the research protocol [PDF]- readme.txt file with this content
DOI: 10.4121/479b9031-a1f5-426c-b7a9-7e9225ce9536.v1
title: Survey on Opportunity Management as part of Project Risk Management

description: The project to set-up the survey in this dataset was supported by the Association for Project Management (APM), and the survey has been sent sent to its corporate member organisations. The survey was intended to help to gain a better understanding of the policies and practice around Opportunity Management as a part of Project Risk Management. The survey has been designed and analysed by members of the APM Risk SIG and Delft University of Technology (The Netherlands). Results of the survey have been presented to APM to help the development of APM's documented approach to Project Risk Management in publications such as the APM Body of Knowledge and SIG Guides. In addition, anonymous and aggregated survey results are used for academic publications, providing more insight into the practice of Opportunity Management. The dataset contains:- Survey questions as they have been entered into Qualtrics (TM) [PDF]- Coding scheme that has been used to code the answers to the survey questions [PDF]- Raw answers to the survey questions (fully anonymized) [CSV]- Data Management Plan (DMP) for the survey as part of the HREC application [PDF]- HREC approval from TU Delft for the research protocol [PDF]- readme.txt file with this content
DOI: 10.15468/dl.5hvyjm
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-110.7552 24.60324,-110.48543 24.24935,-110.07353 24.22905,-110.02132 24.50462,-110.16925 24.815,-110.7552 24.60324))",
 "TaxonKey is Pocillopora verrucosa (Ellis & Solander, 1786)"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053253-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ecar4h
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Suberanthus neriifolius (A.Rich.) Borhidi & M.Fernández"
 ]
}

 The dataset includes 33 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009195-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcw8gx
title: Occurrence Download

description: A dataset containing 7052 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pelophylax nigromaculatus (Hallowell, 1861)"
 ]
}

 The dataset includes 7052 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088193-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.62pyd6
title: Occurrence Download

description: A dataset containing 3661 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fish Specimen Collection of National Museum, Philippines"
 ]
}

 The dataset includes 3661 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0291549-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ujxnv
title: Occurrence Download

description: A dataset containing 528975 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Madagascar"
 ]
}

 The dataset includes 528975 records from 313 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037410-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ai07ev
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-100.01953125 36.4849079147628, -103.0517578125 36.52023248191558, -103.095703125 32.1309667996123, -106.6552734375 32.056507629154474, -103.271484375 28.952399052966186, -102.3486328125 29.871134918931105, -101.4697265625 29.871134918931105, -100.283203125 28.567155979494256, -100.01953125 36.4849079147628))",
 "HasCoordinate is true",
 "TaxonKey is Artemisia L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 116 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009195-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.