cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7417727
title: Switching between Numerical Black-box Optimization Algorithms with Warm-starting Policies - Reproduction artifacts

description: # Reproducibility instructions This document details the steps to reproduce the results presented in the paper 'Chaining of Numerical Black-box Algorithms: Investigating the Impact of Warm-Starting and the Switching Point' ## Algorithm code<br> The code for the individual algorithms and the switching routines is included in the 'dynas.zip' folder. ## Data collection<br> To collect the performance data for the static algorithms, the file 'data_collection.py' can be used. This file runs all 5 static algorithm on the function suite used in the paper, using the 'ioh' package. To run it, please modify the 'ioh_dir' variable to a place where the data should be stored. <br> The resulting data is made available under the 'static.zip' file. ## Processing code<br> The code which processes the performance data into the list of usecases is part of the 'Processing_R' notebook. <br> This results in a set of rds-files with the data in IOHanalyzer's internal format, and in a csv file ('Split_performances_relative.csv') with the selected usecases. This csv file can then be read in using the 'visualization' notebook, which can generate Figure 1 from the paper. This notebook can then be used to count the specific usecases, which is the data shown in Table 1. The csv-file containing the selected usecases ('usecases.csv') is also generated here. The 'usecases' csv file can be used in the 'Data_collection_switch' notebook to run the dynamic configurations. This results in the 'Dynamic.zip' data, which can again be read using IOHanalyzer in the 'Processing_R' notebook. This then generates several csv-files, for both the static and dynamic case, containing the per-run hitting times ('RT_samples.zip'). These are then used in the 'Visualization' notebook to generate figure 3 and 4, as well as table 2. ## Countour plots<br> The code for generating Figure 5 is included in the end of the 'Visualization' notebook. ## Performance comparison plot<br> Figure 6 has been generated using IOHanalyzer web-interface (iohanalyzer.liacs.nl), by uploading the files in 'cma_bfgs.zip'. ## Switch point impact plot<br> Figure 7 has been generated using the 'split_experiment' notebook
DOI: 10.5281/zenodo.7186236
title: UIBVFEDMASK

description: After the Covid-19 pandemic the use of face masks has become a common practice in many situations. Partial occlusion of the face due to the use of masks poses new challenges for facial expression recognition because of the loss of significant facial information. Consequently, the identification and classification of facial expressions can be negatively affected when using neural networks in particular. This paper presents a new data set of virtual characters, with and without face masks, with identical geometric information and spatial location. This novelty will certainly allow researchers a better refinement on lost information due to the occlusion of the mask
description: This research was funded by Project EXPLainable Artificial INtelligence systems for health and well-beING (EXPLAINING) grant number PID2019-104829RA-I00 / MCIN/ AEI / 10.13039/501100011033
DOI: 10.5281/zenodo.7440346
title: UIBVFEDMASK

description: After the Covid-19 pandemic the use of face masks has become a common practice in many situations. Partial occlusion of the face due to the use of masks poses new challenges for facial expression recognition because of the loss of significant facial information. Consequently, the identification and classification of facial expressions can be negatively affected when using neural networks in particular. This paper presents a new data set of virtual characters, with and without face masks, with identical geometric information and spatial location. This novelty will certainly allow researchers a better refinement on lost information due to the occlusion of the mask
description: This research was funded by Project EXPLainable Artificial INtelligence systems for health and well-beING (EXPLAINING) grant number PID2019-104829RA-I00 / MCIN/ AEI / 10.13039/501100011033
DOI: 10.6084/m9.figshare.21729359
title: Three-point bending test data and procedures

description: The tests were conducted according to the procedures specified in ASTM D7264 (2015) to determine the flexural stiffness and strength properties by loading the sample to failure.
DOI: 10.6084/m9.figshare.21729332
title: Tensile test data and procedures

description: CFRP coupons were tested in tension on Instron Universal Testing Machine 5900R-4484. Samples were loaded to failure at a constant displacement rate of 0.08 in./min.
DOI: 10.6084/m9.figshare.21084829.v3
title: List of native-alien populations in South Africa.csv

description: Native-alien population is defined as a population that is within a country to which the species is native and founded by individuals moved by direct human agency (or substantial indirect human agency over a biogeographical barrier to an area beyond the species’ native range Nelufule et al. 2022).
DOI: 10.4225/35/5ab9bd1e2f4fb
title: EucFACE hydrological and meteorological measurements from 2012-04-30 to 2014-11-15
DOI: 10.5281/zenodo.4279160
title: Field measurements of aerosol particles near a runway at Narita International Airport, Japan

description: Field measurements of aerosol particles were conducted at an observation point ~180 m from the centerline of runway A (~140 m from the edge of the runway) at Narita International Airport (NRT), Japan, in February 2018. The online aerosol instruments used for the field measurements consisted of an ultrafine condensation particle counter (UCPC; Model 3776, TSI, d<sub>50</sub> = 2.5 nm), a condensation particle counter (CPC; Model 3771, TSI, d<sub>50</sub> = 10 nm), a scanning mobility particle sizer (SMPS; Model 3080, TSI), and an engine exhaust particle sizer (EEPS; TSI). The other instruments included a carbon dioxide (CO<sub>2</sub>) monitor (Model LI-840, Li-Cor Biosciences) and meteorological sensors. The sampling inlet for the UCPC, CPC, and SMPS was switched between an unheated (room temperature) mode and a 350°C heated mode every eight hours during selected time periods to measure the total and the non-volatile particles, respectively. The EEPS was operated independently from the UCPC/CPC/SMPS inlet system and it measured the unheated particle number size distributions during the entire period.
description: {"references": ["Fushimi, A., Saitoh, K., Fujitani, Y., and Takegawa, N.: Identification of jet lubrication oil as a major component of aircraft exhaust nanoparticles, Atmos. Chem. Phys., 19, 6389-6399, doi:10.5194/acp-19-6389-2019, 2019.", "Takegawa, N., Murashima, Y., Fushimi, A., Misawa, K., Fujitani, Y., Saitoh, K., and Sakurai, H.: Characteristics of sub-10 nm particle emissions from in-use commercial aircraft observed at Narita International Airport, Atmos. Chem. Phys. Discuss., doi:10.5194/acp-2020-395, 2020."]}
DOI: 10.6084/m9.figshare.21155131
title: Supplementary Material for: Autoantibodies against Central Nervous System Antigens and the Serum Levels of IL-32 in Patients with Schizophrenia

description: <b><i>Background:</i></b> Schizophrenia is a disease of the nervous system, and immune system disorders can affect its pathogenesis. Activation of microglia, proinflammatory cytokines, disruption of the blood-brain barrier due to inflammation, activation of autoreactive B cells, and consequently the production of autoantibodies against system antigens are among the immune processes involved in neurological diseases. Interleukin-32 (IL-32) is a proinflammatory cytokine that is essential in activating innate and adaptive immune responses. This study aimed to measure the serum level of IL-32 as well as the frequency of autoantibody positivity against several nervous system antigens in patients with schizophrenia. <b><i>Material and Methods:</i></b> This study was conducted on 40 patients with schizophrenia and 40 healthy individuals in the control group. Serum IL-32 levels were measured by ELISA. The frequency of autoantibodies against Hu, Ri, Yo, Tr, CV2, amphiphysin, SOX1, Zic4, ITPR1, CARP, glutamic acid decarboxylase GAD, recoverin, titin, and ganglioside antigens was measured by the indirect immunofluorescence method. <b><i>Results:</i></b> Serum IL-32 levels in patients with schizophrenia were significantly higher compared to the control group. The frequency of autoantibodies against GAD and RI antigens in patients with schizophrenia was significantly higher than in the control group. Autoantibodies were positive in 8 patients for GAD antigen and 5 patients for RI antigen. Autoantibodies were also positive in 2 patients for CV2, 1 patient for Hu, and 1 patient for CARP. Negative results were reported for other antigens. <b><i>Conclusion:</i></b> Our findings suggest that elevated the serum IL-32 level and autoantibodies against GAD and RI antigens may be a reflection of immune system dysregulation in patients with schizophrenia.
DOI: 10.6084/m9.figshare.21716531
title: Supplementary Material for: Impact of the Introduction of a Public Taxi Ride in Rural South Korea on Levels of Healthcare Utilization among Elderly Patients with Diabetes

description: <b><i>Introduction:</i></b> A nine-cent public taxi ride service was introduced to improve public transportation in the rural county of Seocheon, which has an ageing population. This study investigated the effect of this policy on the levels of healthcare utilization in individuals with diabetes aged 65 years or above. <b><i>Methods:</i></b> The Korea National Health Insurance System claims data from January 2006 to May 2013 (pre-intervention) and June 2013 to December 2014 (post-intervention) were used. The treatment group consisted of patients residing in Seocheon, and the control group consisted of patients residing in neighbouring areas with a similar demographic composition. The difference-in-difference approach was used to estimate differences in levels of healthcare utilization between the treatment and control groups before and after the intervention period. <b><i>Results:</i></b> The introduction of public taxi transportation service was associated with an increase in outpatient visits. Specifically, the number of outpatient visits to public health centres increased, whereas those to tertiary hospitals decreased. The number of inpatient visits to general hospitals also increased. <b><i>Conclusion:</i></b> The results of this study confirm a relationship between the introduction of public taxi transportation services and increased healthcare utilization in older patients with diabetes in rural areas. These findings are noteworthy considering the importance of continuous care in managing chronic diseases.
DOI: 10.6084/m9.figshare.21716579
title: Supplementary Material for: The Effectiveness of Metacognitive Therapy Compared to Behavioral Activation for Severely Depressed Outpatients: A Single-Center Randomized Trial

description: <b><i>Introduction:</i></b> Major depressive disorder (MDD) is a highly prevalent and disabling disorder. This study examines two psychotherapy methods for MDD, behavioral activation (BA), and metacognitive therapy (MCT), when applied as outpatient treatments to severely affected patients. <b><i>Methods:</i></b> The study was conducted in a tertiary outpatient treatment center. Patients with a primary diagnosis of MDD (<i>N</i> = 122) were included in the intention-to-treat sample (55.7% female, mean age 41.9 years). Participants received one individual and one group session weekly for 6 months (M). Assessments took place at baseline, pretreatment, mid-treatment (3 M), post-treatment (6 M), and follow-up (12 M). The primary outcome was depressive symptomatology assessed by the Hamilton Rating Scale for Depression at 12 M follow-up. Secondary outcomes included general symptom severity, psychosocial functioning, and quality of life. <b><i>Results:</i></b> Linear mixed models indicated a change in depressive symptoms (<i>F</i>(2, 83.495) = 12.253, <i>p</i> &lt; 0.001) but no between-group effect (<i>F</i>(1, 97.352) = 0.183, <i>p</i> = 0.670). Within-group effect sizes were medium for MCT (post-treatment: <i>d</i> = 0.610; follow-up: <i>d</i> = 0.692) and small to medium for BA (post-treatment: <i>d</i> = 0.636, follow-up: <i>d</i> = 0.326). In secondary outcomes, there were improvements (<i>p</i> ≤ 0.040) with medium to large within-group effect sizes (<i>d</i> ≥ 0.501) but no between-group effects (<i>p</i> ≥ 0.304). Response and remission rates did not differ between conditions at follow-up (response MCT: 12.9%, BA: 13.3%, remission MCT: 9.7%, BA: 10.0%). The deterioration rate was lower in MCT than in BA (χ<sup>2</sup><sub>1</sub> = 5.466, <i>p</i> = 0.019, NTT = 7.4). <b><i>Discussion:</i></b> Both MCT and BA showed symptom reductions. Remission and response rates were lower than in previous studies, highlighting the need for further improvements in adapting/implementing treatments for severely affected patients with MDD.
DOI: 10.6084/m9.figshare.21107269
title: Supplementary Material for: Sex Disparities in the Treatment of Aortic Stenosis and Related Outcomes: An Analysis of the National Inpatient Sample

description: Introduction The impact of transcatheter aortic valve replacement (TAVR) on sex disparities has not been well established. This study sought to examine the impact of sex on outcomes following aortic valve replacement (AVR) for aortic stenosis (AS) in the era of routine TAVR. Methods We performed a cross-sectional analysis of the National Inpatient Sample (2009-18) to study AS visits for all AVR, and in-hospital outcomes as a function of sex. Survey estimation commands were used to provide national estimates. Results There were an estimated 431,344 surgical aortic valve replacement (SAVR) and 189,137 TAVR inpatient visits. Mortality was higher in women after SAVR (3.8%±0.1 vs 2.7%±0.07, p&lt;0.001) and TAVR (2.4%±0.1 vs 1.7%±0.1, p&lt;0.001) compared to men. Female patients undergoing SAVR had higher rates of permanent pacemaker (PPM) implantation, stroke, and bleeding (5.9%±0.1 vs 5%±0.1, 2.8%±0.1 vs 2.3%±0.07, and 37.8%±0.8 vs 29.8%±0.6; p&lt;0.001, respectively) but lower rates of acute kidney injury (AKI) (16.4%±0.3 vs 20.3%±0.3, p&lt;0.001). Women undergoing TAVR had higher rates of stroke and bleeding (2.4%±0.1 vs 1.6%±0.09 and 28.7%±0.6 vs 22%±0.5; p&lt;0.001 respectively) but lower rates of PPM and AKI (9.5%±0.3 vs 10.7%±0.2 and 11.3%±0.3 vs 13.4%±0.3; p&lt;0.001, respectively). Compared with isolated SAVR, isolated TAVR was associated with lower mortality in women during 2016-18, both after multivariable adjustment (OR = 0.40, 95% CI 0.27-0.60) and propensity matching (mean difference 0.66%±0.2), however there was no difference in men. Conclusion Although women continue to have higher in-hospital mortality following both TAVR and SAVR as compared to men, TAVR is associated with a lower in-hospital mortality in women compared to SAVR. Thus, TAVR may represent a potential intervention to narrow the sex-based disparities in the management of AS.
DOI: 10.17188/1307861
title: Materials Data on Li3Sb by Materials Project

description: Li3Sb is Sodium arsenide structured and crystallizes in the hexagonal P6_3/mmc space group. The structure is three-dimensional. there are two inequivalent Li1+ sites. In the first Li1+ site, Li1+ is bonded to four equivalent Sb3- atoms to form a mixture of distorted corner, edge, and face-sharing LiSb4 tetrahedra. There are one shorter (2.82 Å) and three longer (3.03 Å) Li–Sb bond lengths. In the second Li1+ site, Li1+ is bonded in a trigonal planar geometry to three equivalent Sb3- atoms. All Li–Sb bond lengths are 2.71 Å. Sb3- is bonded in a 11-coordinate geometry to eleven Li1+ atoms.
DOI: 10.5281/zenodo.4113244
title: Transmission Electron Microscopy Dataset for Image Deblurring

description: The dataset consists of images corrupted by motion blur together with corresponding high-quality images from two different samples, one of thin sectioned kidney tissue and one of a calibration grid. The data was collected using a MiniTEM microscope (Vironova AB). The motion corrupted images are created by moving the sample under the microscope. Each low-quality (motion blurry) imaging sequence has corresponding high-quality images (captured by stopping the microscope at each position in the sequence). The high-quality frames have a size of 2048 x 2048 pixels with an overlap of 50% between adjacent frames. The low-quality (motion blurry) frames are captured with a size of 1024x1024 with the same motion direction (approximately vertically upwards). All images were captured at a field of view of 32μm, and with a per image exposure time of 15ms and stored as 16 bit tiff files. Both samples are imaged with the same settings and have four imaging sequences each. The dataset contains the raw image files as well as a partitioning into training, validation and testing. For these images, five low-quality images have been registered to each high-quality image. For the five registered images the intersection of all is cropped and stored. 1 of the 4 imaging sequences are chosen as the test set and the last part of another of the imaging sequences as a validation set. The rest is put in the training set. <em><strong>Folder Structures:</strong></em> <strong>Raw data:</strong> Raw data is the unprocessed data and each sample folder contains 4 image sequences. In each of these folders low-quality (motion blurry) images are stored in folder “Low” and corresponding high-quality images are stored in “GT” <strong>TrainValTest:</strong> TrainValTest consist of data where the low-quality frames have been registered to the high-quality frames and divided into a training, validation and test set. Each of the Train, Val, Test folders contains 3 subfolders. “Low” contains folders names the same as the files in “GT” where each folder contains five low-quality (motion blurry) images, registered the that corresponding high-quality image. “GT” contains the corresponding high-quality images down sampled to the same spatial size as the low-quality images. “GT_hr” contains the same images as “GT” but not down sampled.
description: Financially supported by the Swedish Foundation for Strategic Research (grant BD150008), the European Research Council (grant ERC2015CoG 682810), and the Uppsala University AI4Research initiative. Data collected at, and in collaboration with, Vironova AB, Stockholm, Sweden
DOI: 10.5281/zenodo.7050771
title: Sentinel-3 SLSTR and MODIS satellite images of Raikoke 2019 and Eyjafjallajökull 2010 eruptions

description: Dataset used for the study presented in the paper "Volcanic cloud detection using Sentinel-3 satellite data by means of neural networks: the Raikoke 2019 eruption test case" (Petracca, I., De Santis, D., Picchiani, M., Corradini, S., Guerrieri, L., Prata, F., Merucci, L., Stelitano, D., Del Frate, F., Salvucci, G., and Schiavon, G.: Volcanic cloud detection using Sentinel-3 satellite data by means of neural networks: the Raikoke 2019 eruption test case, Atmos. Meas. Tech. Discuss. [preprint], https://doi.org/10.5194/amt-2022-173, in review, 2022.).<br>
description: Terra-Aqua/MODIS data are distributed from the Level-1 and Atmosphere Archive & Distribution System (LAADS) Distributed Active Archive Center (DAAC) and they are available at: https://ladsweb.modaps.eosdis.nasa.gov/search/. Sentinel-3/SLSTR data are distributed from the Copernicus Open Access Hub and they are available at: https://scihub.copernicus.eu/dhus/#/home.
description: {"references": ["Petracca, I., De Santis, D., Picchiani, M., Corradini, S., Guerrieri, L., Prata, F., Merucci, L., Stelitano, D., Del Frate, F., Salvucci, G., and Schiavon, G.: Volcanic cloud detection using Sentinel-3 satellite data by means of neural networks: the Raikoke 2019 eruption test case, Atmos. Meas. Tech. Discuss. [preprint], https://doi.org/10.5194/amt-2022-173, in review, 2022."]}
DOI: 10.5281/zenodo.7107689
title: The OpenMRG data set

description: <strong>Overview</strong> Data for the article "OpenMRG: Open data from Microwave links, Radar, and Gauges for rainfall quantification in Gothenburg, Sweden" (Andersson et al. 2022, Earth Syst. Sci. Data, 14, 5411–5426, https://doi.org/10.5194/essd-14-5411-2022) OpenMRG consists of data from 364 bi-directional commercial microwave links (CML, 10s resolution, true coordinates), one C-band radar composite, and 11 rainfall gauges covering Gothenburg, Sweden during June-August 2015. More details on the data structure and files the are provided in readme.txt. We acknowledge the indispensable support for this work by Hi3G Access AB (providing access to the CML network), Göteborgs Stad – Kretslopp och Vatten (providing the City network data), Ericsson AB (gathering CML data), and the Swedish Meteorological and Hydrological Institute (providing the SMHI gauge and radar data). We also thank Lei Bao, Anna Jacobsson, Christina Larsson, Mohamed Mustafa, Mikael Riedel, Johan Selin, Victor Näslund, and Johan Thuresson for valuable technical contributions and discussion. This work was carried out in the context of the projects MEMO (financed by Vinnova, dnr: 2017-03297), FutureCityFlow (financed by Vinnova, dnr: 2019-04701), and Urban skyfallsinformation (financed by the Swedish Ministry of the Environment and Energy, grant 1:10 for climate adaptation). <strong>Versions</strong> 1.1: revised data set pertaining to the ESSD article by Andersson et al. 2022 (https://doi.org/10.5194/essd-14-5411-2022). These revisions were made on recommendation by the reviewers and include changing variable names and adding more variables to the data set. <br> 1.0: Initial data set, used in ESSD preprint.
description: {"references": ["Andersson, J.C.M., Olsson, J., van de Beek, R. (C Z.), Hansryd, J., 2022. OpenMRG: Open data from Microwave links, Radar, and Gauges for rainfall quantification in Gothenburg, Sweden. Earth System Science Data 14, 5411\u20135426. https://doi.org/10.5194/essd-14-5411-2022"]}
DOI: 10.17037/data.00002534
title: Management of at-risk mothers and infants &lt; 6 months in national and international SAM guidelines: AGREE scoring of guidelines and guideline content spreadsheet

description: This collection consists of : (1) An MS Excel spreadsheet that contains summarised content information of 71 national and international malnutrition guidelines for an overview of available guidance for at-risk mothers and infants &lt; 6 months (Guideline_details_data); (2) An MS Excel spreadsheet that contain the AGREE II scores of 71 national and international malnutrition guidelines assessing their quality (AGREE II review data).
description: The 71 malnutrition guidelines were sourced online (via a common search engine and through resource collections of malnutrition working groups, homepages of national health ministries or NGO homepages) and via professional contacts. They were read in their entirety, then relevant content (e.g. on clinical recommendations) was extracted into an excel spreadsheet to provide a comprehensive overview. Two independent reviewers scored 71 national and international malnutrition guidelines according to the AGREE II framework.