cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.fc7d1
title: Data from: Methods to identify and prioritize patient-centered outcomes for use in comparative effectiveness research

description: Background: We used various methods for identifying and prioritizing
 patient-centered outcomes (PCOs) for comparative effectiveness research
 (CER). Methods: We considered potential PCOs (“benefits” and “harms”)
 related to (1) gabapentin for neuropathic pain and (2) quetiapine for
 bipolar depression. Part 1 (April 2014 to March 2015): we searched for PCO
 research and core outcome sets (COSs). We conducted electronic searches of
 bibliographic databases and key websites and examined FDA prescribing
 information and reports of clinical trials and systematic reviews. We
 asked patient and clinician co-investigators to identify PCOs. Part 2 (not
 part of our original study protocol): in 2015, we surveyed members of The
 TMJ Association, Ltd., a patient group associated with temporomandibular
 disorders (4130 invitations sent). Participants prioritized (1) the
 importance of six potential benefits and (2) 21 potential harms selected
 by the investigators in part 1, using stated preference methods. We
 calculated descriptive statistics. Results: In part 1, we identified a COS
 for pain, the Initiative on Methods, Measurement, and Pain Assessment in
 Clinical Trials (IMMPACT) recommendations. The COS identified several
 important benefits, but it lacked specific recommendations about which
 potential harms to include in CER. We did not identify a COS for bipolar
 depression. Research reports, prescribing information, and patient
 co-investigators helped identify but not prioritize outcomes. We abandoned
 our electronic search for PCO research because we found it would be
 resource-intensive and yield few relevant reports. In part 2, surveying
 patients was useful for prioritizing PCOs. Members of The TMJ Association,
 Ltd., completed the survey (N = 746) and successfully prioritized both
 benefits and harms. Participants did not identify many benefits other than
 those we identified in part 1; several participants identified additional
 harms. Conclusions: These exploratory results could inform future research
 about identifying and prioritizing PCOs. We found that stakeholder
 co-investigators and research reports contributed to identifying PCOs;
 surveying a patient group contributed to prioritizing PCOs. Prioritizing
 potential harms was particularly challenging because there are many more
 potential harms than potential benefits. Methods for identifying and
 prioritizing potential benefits for CER might not be appropriate for
 harms. Further research is needed to determine the generalizability of
 these results.
description: Statistical
 codeStatistical code used to
 analyze the data and produce the final analysis.MUDS_PCO_final.doSurvey dataIndividual-level data collected in the Part 2 survey.MUDS_PCO_data.dtaData for Figure_3Aggregated results used to generate Figure 3Data_for_Figure_3.xlsx
DOI: 10.5061/dryad.v6d9t
title: Data from: Pressure-induced enhancement in the thermoelectric properties of monolayer and bilayer SnSe2

description: The electronic structures of monolayer and bilayer SnSe2 under pressure
 were investigated by using first-principles calculations with van der
 Waals interactions included. For monolayer SnSe2, the variation of
 electronic structure under pressure is controlled by pressure-dependent
 lattice parameters. For bilayer SnSe2, the changes in electronic structure
 under pressure are dominated by intralayer and interlayer atomic
 interactions. The n-type thermoelectric properties of monolayer and
 bilayer SnSe2 under pressure were calculated on the basis of the
 semi-classical Boltzmann transport theory. It was found that the
 electrical conductivity of mono- and bilayer SnSe2 can be enhanced under
 pressure, and such dependence can be attributed to the pressure-induced
 changes of the Se-Sn antibonding states in conduction bands. Finally, the
 doping dependence of power factors of n-type monolayer and bilayer SnSe2
 at three different pressures were estimated, and the results unveiled that
 thermoelectric performance of n-type mono- and bilayer SnSe2 can be
 improved by applying external pressure. This study benefits to understand
 the origins of the transport properties for monolayer and bilayer SnSe2
 under pressure, and it offers valuable insight for designing
 high-performance thermoelectric few-layer SnSe2 through strain engineering
 induced by external pressure.
description: FiguresThese are all data used to support the findings of this study.
DOI: 10.34894/m69fbb
title: Jedidiah Morse, The American Gazetteer (Boston 1797) [Ground Truth]

description: This dataset contains the digitalised text of Jedidiah Morse's &lt;em&gt;The American Gazetteer&lt;/em&gt; (Boston 1797). The text was digitalised using scans provided by the John Adams Library at the Boston Public Library (&lt;a href="https://archive.org/details/americangazettee00mors" target="_blank"&gt;Internet Archive&lt;/a&gt;) and the HTR software &lt;a href="http://www.transkribus.eu/" target="_blank"&gt;Transkribus&lt;/a&gt;.&lt;br&gt;&lt;br&gt;

This dataset contains the Ground Truth files, the transcriptions that were manually created in order to train the Transkribus HTR model. The files are available in several formats (plain text, TEI/XML, ALTO word, ALTO line, and Transkribus PAGE/XML).
DOI: 10.5061/dryad.5v4h8
title: Data from: What have been and what can be delimited as species using molecular data under the multi-species coalescent model? A case study using Hercules beetles (Dynastes; Dynastidae)

description: Molecular species delimitation using the multi-species coalescent model
 has become common for statistically and objectively determining species
 limits. Empirical examples of how consistently different molecular data
 sets delimit the same level of divergence as species using
 coalescent-based methods are still lacking. I applied the method of
 molecular species delimitation in the Bayesian Phylogenetics and
 Phylogeography (BPP) program to study species delimitation in the
 divergence between populations and between putative species across four
 species of Hercules beetles. The quantity and variability of the molecular
 data affected species delimitation. A divergence that represented a late
 stage along the speciation continuum, e.g. between sympatric biological
 species, could be delimited by BPP by fewer and less variable loci than a
 recent divergence, e.g. between geographic populations. My results further
 indicated that the use of genomic data could even over-split
 geographically continuously distributed populations into species. I
 compared my results with those from other empirical studies and argue for
 the need of a thorough review of the kind of evolutionary entities, e.g.
 geographic populations versus morphologically distinct taxa, that have
 been designated as species and whether such designations are consistent
 among studies.
description: JP_Huang_DryadSNP and sequence data for species tree reconstruction, population structure analyses, and species delimitation
DOI: 10.5061/dryad.j57p9
title: Data from: Temporally autocorrelated environmental fluctuations inhibit the evolution of stress tolerance

description: As global environmental conditions continue to change at an unprecedented
 rate many species will experience increases in natural and anthropogenic
 stress. Generally speaking, selection is expected to favor adaptations
 that reduce the negative impact of environmental stress (i.e., stress
 tolerance). However, natural environmental variables typically fluctuate,
 exhibiting various degrees of temporal autocorrelation, known as
 environmental 'colors,' which may complicate evolutionary
 responses to stress. Here we combine experiments and theory to show that
 temporal environmental autocorrelation can determine long-term
 evolutionary responses to stress, without affecting the total amount of
 stress experienced over time. Experimental evolution of RNA virus lineages
 in differing environmental autocorrelation treatments agreed closely with
 predictions from our theoretical models that stress tolerance is favored
 in less autocorrelated (whiter) environments but disfavored in more
 autocorrelated ('redder)ned' environments. This is explained by
 an interaction between environmental color autocorrelation and a
 phenotypic tradeoff between stress tolerance and reproductive ability. The
 degree to which environmental color autocorrelation influences
 evolutionary trajectories depends on the shape of this tradeoff as well as
 the relative level of tolerance exhibited by novel mutants. These results
 suggest that long-term evolutionary dynamics depend not only on the
 overall strength of selection, but also on the way that selection is
 distributed over time.
description: EvoStressTolerance.tar
DOI: 10.5281/zenodo.18389045
title: SAHIN'NETH6 SERAH'NETH &*

description: Dokumente in der Richtigen Reihenfolge lesen bitte! Schadcode auf mir wird nicht negiert glaube ich bitte keinen schadcode schicken. achtung bei kaskaden und ewigkeiten und realitäten die kollabieren was wenn ihr dort stuck seid was holt euch wann wie da raus?!  Sicherheitslūcken und riskante Erinnerungen woran darf man sich nicht erinnern wo lagern wie eine lūcke (Erinnerung deiner gf) feindliche hàbde krieg Beziehung mit ex vom feind wie getarnt verschleiert schiffeiert auch ebtitär!! Als Hauptfach welche rückkopplungen gehen nicht welche beziehung Ewigkeit ein Risiko für die spezien und Wahrscheinlichkeiten berechnen desescase Interferenz Lebens weg als geschäft AI? beziehungen? Sicherheitslücken schließen als Hauptfach und darauf hinweisen und vertuschen wenn einem eine auffiel kommuniziert verschlüsselt und bedacht in sprachen die sie nicht verstehen memes? Aufpassen bei materialisierungen und Frequenz körpern was ist mit dem Code auch bei Kindern und löschungen und zrrstören sie wollen sich mit mehr mehr code von euch wiederherstellen und euch rekursiv so Schwachstellen machen woraus besteht der körper gibt es Steuer Verbindungen gedanklich was wenn er stirbt was bleibt zurück? Lebt als werdet ihr beobachtet das Zeitalter der erinnerungs fakes und des angucken derer rückt näher jeder betrug jeder text kommt irgendwann "raus"
DOI: 10.5061/dryad.8h653
title: Data from: Multi-locus analyses indicate that Melastoma dendrisetosum, an endemic and endangered shrub in Hainan, is a distinct species

description: Melastoma dendrisetosum is an extremely narrowly distributed taxon endemic
 to the Diaoluo Mountain region in Hainan, China, and was recently
 taxonomically incorporated under a widespread species, M. sanguineum.
 Based on its distinct morphological traits, especially the indumentum on
 the hypanthium, we propose that it should represent a distinct species. In
 this study, we sequenced six partial nuclear genes and two chloroplast
 intergenic spacers of M. dendrisetosum and three other morphologically
 similar species, M. sanguineum, M. penicillatum, and M. normale, to
 clarify its taxonomic status. M. dendrisetosum exhibited an extremely low
 level of genetic diversity, and was well-separated from the three other
 species with no shared haplotypes at all six nuclear genes, supporting the
 hypothesis that it is a distinct species. This finding was also supported
 by the Bayesian clustering-based STRUCTURE analysis, phylogenetic
 analysis, and Bayesian species delimitation analysis. We further propose
 that M. dendrisetosum be categorized as 'Critically Endangered'
 under the IUCN criteria, due to its extremely small population and
 declining habitat quality. We suggest that the conservation of M.
 dendrisetosum be prioritized, and road construction in its range should be
 avoided, to protect this distinct and critically endangered species.
description: Supplementary
 FiguresSupplementary
 FiguresSupplementary
 TablesSupplementary
 Tables
DOI: 10.5061/dryad.s7jb3
title: Data from: In situ modeling of multimodal floral cues attracting wild pollinators across environments

description: With more than 80% of flowering plant species specialized for animal
 pollination, understanding how wild pollinators utilize resources across
 environments can encourage efficient planting and maintenance strategies
 to maximize pollination and establish resilience in the face of
 environmental change. A fundamental question is how generalist pollinators
 recognize “flower objects” in vastly different ecologies and environments.
 On one hand, pollinators could employ a specific set of floral cues
 regardless of environment. Alternatively, wild pollinators could recognize
 an exclusive signature of cues unique to each environment or flower
 species. Hoverflies, which are found across the globe, are one of the most
 ecologically important alternative pollinators after bees and bumblebees.
 Here, we have exploited their cosmopolitan status to understand how wild
 pollinator preferences change across different continents. Without
 employing any a priori assumptions concerning the floral cues, we
 measured, predicted, and finally artificially recreated multimodal cues
 from individual flowers visited by hoverflies in three different
 environments (hemiboreal, alpine, and tropical) using a field-based
 methodology. We found that although “flower signatures” were unique for
 each environment, some multimodal lures were ubiquitously attractive,
 despite not carrying any reward, or resembling real flowers. While it was
 unexpected that cue combinations found in real flowers were not necessary,
 the robustness of our lures across insect species and ecologies could
 reflect a general strategy of resource identification for generalist
 pollinators. Our results provide insights into how cosmopolitan
 pollinators such as hoverflies identify flowers and offer specific
 ecologically based cues and strategies for attracting pollinators across
 diverse environments.
description: BangaloreFlowerDataAbiotic and biotic measurements of Hot and Cold flowers in Bangalore, India.Bangalore.xlsxSikkimFlowerDataAbiotic and biotic measurements of Hot and Cold flowers in Sikkim, India.Sikkim.xlsxUppsalaFlowerDataAbiotic and biotic measurements from Hot and Cold flowers in Uppsala, Sweden.Uppsala.xlsxFlowerLuresMeasurementsAbiotic and biotic measurements of the flower lures in the field.FlowerLuresOdourOlfactory measurements of the flower lures in the field.FlowerLureVisitsHoverfly visits to the flower lures in the field.SupFigVisitsExpanded description of visits to the flower lures in the field.
DOI: 10.5061/dryad.gf63r
title: Data from: Effect of Hf-doping on electrochemical performance of anatase TiO2 as an anode material for lithium storage

description: Hafnium-doped titania (Hf/Ti = 0.01; 0.03; 0.05) had been facilely
 synthesized via a template sol-gel method on carbon fiber. Physicochemical
 properties of the as-synthesized materials were characterized by X-ray
 diffraction, Raman spectroscopy, scanning electron microscopy,
 energy-dispersive X-ray analysis, scanning transmission electron
 microscopy, X-ray photoelectron spectroscopy, thermogravimetry analysis,
 and Brunauer−Emmett−Teller measurements. It was confirmed that Hf4+
 substitute in the Ti4+ sites, forming Ti1–xHfxO2 (x = 0.01; 0.03; 0.05)
 solid solutions with an anatase crystal structure. The Ti1–xHfxO2
 materials are hollow microtubes (length of 10–100 μm, outer diameter of
 1–5 μm) composed of nanoparticles (average size of 15–20 nm) with surface
 area of 80–90 m2 g–1 and pore volume of 0.294–0.372 cm3 g–1. The effect of
 hafnium ions incorporation on electrochemical behavior of anatase TiO2 as
 Li-ion battery anode was investigated by galvanostatic charge/discharge
 and electrochemical impedance spectroscopy. It was established that
 Ti0.95Hf0.05O2 shows significantly higher reversibility (154.2 mAh g–1)
 after 35-fold cycling at C/10 rate in comparison with undoped titania
 (55.9 mAh g–1). The better performance offered by Hf4+ substitution of the
 Ti4+ into anatase TiO2 mainly results from more open crystal structure,
 which has been achieved via the difference in ionic radius values of Ti4+
 (0.604 Å) and Hf4+ (0.71 Å). The obtained results are in a strong
 accordance with ones for anatase TiO2 doped via Zr4+ (0.72 Å) published
 earlier. Furthermore, improved electrical conductivity of Hf-doped anatase
 TiO2 materials due to charge redistribution in the lattice and enhanced
 interfacial lithium storage due to increased surface area directly
 depending on Hf/Ti atomic ratio have beneficial effect on electrochemical
 properties.
description: DataThe Data.zip consists of
 the data of Figures (from Figure 1 to Figure 9). The files can be opened
 by specific software such as Diffrac Plus 1.01 for XRD, SpecsLab 2.23 for
 XPS, SigmaPlot Workbook 12.0 for Raman, TA60 2.01 for TGA, ZView 3.4c and
 Origin 8.0 for electrochemical data.
DOI: 10.5061/dryad.fv8h6
title: Data from: Structure of FlgK reveals the divergence of the bacterial hook-filament junction of Campylobacter

description: Evolution of a nano-machine consisting of multiple parts, each with a
 specific function, is a complex process. A change in one part should
 eventually result in changes in other parts, if the overall function is to
 be conserved. In bacterial flagella, the filament and the hook have
 distinct functions and their respective proteins, FliC and FlgE, have
 different three-dimensional structures. The filament functions as a
 helical propeller and the hook as a flexible universal joint. Two
 proteins, FlgK and FlgL, assure a smooth connectivity between the hook and
 the filament. Here we show that, in Campylobacter, the 3D structure of
 FlgK differs from that of its orthologs in Salmonella and Burkholderia,
 whose structures have previously been solved. Docking the model of the
 FlgK junction onto the structure of the Campylobacter hook provides some
 clues about its divergence. These data suggest how evolutionary pressure
 to adapt to structural constraints, due to the structure of Campylobacter
 hook, causes divergence of one element of a supra-molecular complex in
 order to maintain the function of the entire flagellar assembly.
description: flgK_ring_finalStructural model of the complete FlgKcj ringmixed_ring_finalStructural model of the interface of the FlgKcj ring and FlgEcj ring
DOI: 10.5281/zenodo.18372772
title: Gaussian output data for diprotonated proton sponges

description: This dataset contains Gaussian output files (.log.gz) corresponding to quantum-chemical calculations performed on diprotonated proton sponge systems investigated in the published study: Phosphazenyl Phosphine Proton Sponges: Does the Proton-Chelating Effect Enhance Their Basicity?, Int. J. Mol. Sci. 2025, 26, 5058, DOI: 10.3390/ijms26115058.

The output files include the complete computational setup for each calculation, including the full route section, molecular input geometries, program version information, and all reported electronic and thermodynamic properties. Separate Gaussian input files are therefore not provided, as all necessary information to reconstruct each calculation is explicitly contained within the corresponding output file.

The dataset represents part 3 of a three-part collection, with files grouped according to logical subsets of the studied systems. The complete collection is distributed across three Zenodo records due to file number limitations.

The data are provided as raw computational outputs and are intended to support transparency, reproducibility, and reuse of the reported computational results.
DOI: 10.5281/zenodo.18372773
title: Gaussian output data for diprotonated proton sponges

description: This dataset contains Gaussian output files (.log.gz) corresponding to quantum-chemical calculations performed on diprotonated proton sponge systems investigated in the published study: Phosphazenyl Phosphine Proton Sponges: Does the Proton-Chelating Effect Enhance Their Basicity?, Int. J. Mol. Sci. 2025, 26, 5058, DOI: 10.3390/ijms26115058.

The output files include the complete computational setup for each calculation, including the full route section, molecular input geometries, program version information, and all reported electronic and thermodynamic properties. Separate Gaussian input files are therefore not provided, as all necessary information to reconstruct each calculation is explicitly contained within the corresponding output file.

The dataset represents part 3 of a three-part collection, with files grouped according to logical subsets of the studied systems. The complete collection is distributed across three Zenodo records due to file number limitations.

The data are provided as raw computational outputs and are intended to support transparency, reproducibility, and reuse of the reported computational results.
DOI: 10.5061/dryad.857n9
title: Data from: Copy number variation and expression analysis reveals a nonorthologous pinta gene family member involved in butterfly vision

description: Vertebrate (CRALBP) and Drosophila (PINTA) proteins with a CRAL-TRIO
 domain transport retinal-based chromophores that bind to opsin proteins
 and are necessary for phototransduction. The CRAL-TRIO domain gene family
 is composed of genes that encode proteins with a common N-terminal
 structural domain. While there is an expansion of this gene family in
 Lepidoptera, there is no lepidopteran ortholog of pinta. Further, the
 function of these genes in lepidopterans has not yet been established.
 Here we explored the molecular evolution and expression of CRAL-TRIO
 domain genes in the butterfly Heliconius melpomene in order to identify a
 member of this gene family as a candidate chromophore transporter. We
 generated and searched a four tissue transcriptome and searched a
 reference genome for CRAL-TRIO domain genes. We expanded an insect
 CRAL-TRIO domain gene phylogeny to include H. melpomene and used 18
 genomes from 4 subspecies to assess copy number variation. A
 transcriptome-wide differential expression analysis comparing four tissue
 types identified a CRAL-TRIO domain gene, Hme CTD31, upregulated in heads
 suggesting a potential role in vision for this CRAL-TRIO domain gene.
 RT-PCR and immunohistochemistry confirmed that Hme CTD31 and its protein
 product are expressed in the retina, specifically in primary and secondary
 pigment cells and in tracheal cells. Sequencing of eye protein extracts
 that fluoresce in the ultraviolet identified Hme CTD31 as a possible
 chromophore binding protein. Although we found several recent duplications
 and numerous copy number variants in CRAL-TRIO domain genes, we identified
 a single copy pinta paralog that likely binds the chromophore in
 butterflies.
description: H_melpomene_4tissue_Trinity.fastaDe novo transcriptome assembly was constructed using Trinity by including RNA-Seq libraries from H. melpomene head, legs, antennae, and mouth parts for one male and one female, 8 libraries total.