cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/nedap3/ztedst
title: total.US.2011.hourly.UTC.2.tar

description: :unav
DOI: 10.7910/dvn/nedap3/h41tl0
title: total.US.2011.hourly.UTC.5.tar

description: :unav
DOI: 10.7910/dvn/hpqe8t/q6qame
title: Hospitals_by_Province.tab

description: Hospitals List
DOI: 10.7910/dvn/buxaws/ckiskt
title: Princen et al JPP Information Processing in the EU's CFP Data and Analysis.tab

description: :unav
DOI: 10.7910/dvn/csnwrf/ixqyyj
title: 0- Samples Metadata.xls

description: :unav
DOI: 10.7910/dvn/csnwrf/vtmdjz
title: 10 - HC 3.gci

description: :unav
DOI: 10.7910/dvn/csnwrf/z3mag6
title: 10 - HC 3.cdf

description: :unav
DOI: 10.15468/dl.d55w2c
title: Occurrence Download

description: A dataset listing the 315260 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidoptera"
 ]
}

 The dataset's 315260 records were derived from 11387 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029525-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4e5qp
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Plethodon ainsworthi Lazell, 1998)"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003366-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22qguu
title: Occurrence Download

description: A dataset containing 192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((119.29511 35.32697,119.06689 35.21849,118.80211 34.05923,120.84622 31.97959,122.03536 32.67338,121.48941 33.2072,119.29511 35.32697))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ciconia boyciana Swinhoe, 1873",
 "Year 2020-2024"
 ]
}

 The dataset includes 192 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028956-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12773065
title: ASO-mediated knockdown of GPNMB in mutant-GRN and Grn-deficient peripheral myeloid cells disrupts lysosomal function and immune responses

description: Background: Increases in GPNMB are detectable in FTD-GRN cerebrospinal fluid (CSF) and post-mortem brain, and brains of aged Grn-deficient mice. Although no upregulation of GPNMB is observed in the brains of young Grn-deficient mice, peripheral immune cells of these mice do exhibit this increase in GPNMB. Importantly, the functional significance of GPNMB upregulation in progranulin-deficient states is currently unknown. Given that GPNMB has been discussed as a potential therapeutic target in GRN-mediated neurodegeneration, it is vital for the field to determine what the normal function of GPNMB is in the immune system, and whether targeting GPNMB will elicit beneficial or deleterious effects.

Methods: The effects of GPNMB knock-down via antisense oligonucleotide (ASO) were assessed in peripheral blood mononuclear cells (PBMCs) from 25 neurologically healthy controls (NHCs) and age- and sex-matched FTD-GRN patients, as well as peritoneal macrophages (pMacs) from progranulin-deficient (Grn-/-) and B6 mice. Lysosomal function, antigen presentation and MHC-II processing and recycling were assessed, as well as cytokine release and transcription.

Results: We demonstrate here that ASO-mediated knockdown of GPNMB increases lysosomal burden and cytokine secretion in FTD-GRN carrier and neurologically healthy controls (NHCs) monocytes. ASO-mediated knockdown of GPNMB in Grn-deficient macrophages decreased lysosomal pan-cathepsin activity and protein degradation. In addition, ASO-mediated knockdown of GPNMB increased MHC-II surface expression, which was driven by decreased MHC-II uptake and recycling, in macrophages from Grn-deficient females. Finally, ASO-mediated knockdown of GPNMB dysregulated IFNg-stimulated cytokine transcription and secretion by mouse macrophages due to the absence of regulatory actions of the GPNMB extracellular fragment (ECF). 

Conclusions: Our data herein reveals that GPNMB has a regulatory effect on multiple immune effector functions, including capping inflammation and immune responses in myeloid cells via secretion of its ECF. Therefore, in progranulin-deficient states, the drastic upregulation in GPNMB transcript and protein may represent a compensatory mechanism to preserve lysosomal function in myeloid cells. These novel findings indicate that targeted depletion in FTD-GRN would not be a rational therapeutic strategy because it is likely to dysregulate important immune cell effector functions.
DOI: 10.5281/zenodo.12773066
title: ASO-mediated knockdown of GPNMB in mutant-GRN and Grn-deficient peripheral myeloid cells disrupts lysosomal function and immune responses

description: Background: Increases in GPNMB are detectable in FTD-GRN cerebrospinal fluid (CSF) and post-mortem brain, and brains of aged Grn-deficient mice. Although no upregulation of GPNMB is observed in the brains of young Grn-deficient mice, peripheral immune cells of these mice do exhibit this increase in GPNMB. Importantly, the functional significance of GPNMB upregulation in progranulin-deficient states is currently unknown. Given that GPNMB has been discussed as a potential therapeutic target in GRN-mediated neurodegeneration, it is vital for the field to determine what the normal function of GPNMB is in the immune system, and whether targeting GPNMB will elicit beneficial or deleterious effects.

Methods: The effects of GPNMB knock-down via antisense oligonucleotide (ASO) were assessed in peripheral blood mononuclear cells (PBMCs) from 25 neurologically healthy controls (NHCs) and age- and sex-matched FTD-GRN patients, as well as peritoneal macrophages (pMacs) from progranulin-deficient (Grn-/-) and B6 mice. Lysosomal function, antigen presentation and MHC-II processing and recycling were assessed, as well as cytokine release and transcription.

Results: We demonstrate here that ASO-mediated knockdown of GPNMB increases lysosomal burden and cytokine secretion in FTD-GRN carrier and neurologically healthy controls (NHCs) monocytes. ASO-mediated knockdown of GPNMB in Grn-deficient macrophages decreased lysosomal pan-cathepsin activity and protein degradation. In addition, ASO-mediated knockdown of GPNMB increased MHC-II surface expression, which was driven by decreased MHC-II uptake and recycling, in macrophages from Grn-deficient females. Finally, ASO-mediated knockdown of GPNMB dysregulated IFNg-stimulated cytokine transcription and secretion by mouse macrophages due to the absence of regulatory actions of the GPNMB extracellular fragment (ECF). 

Conclusions: Our data herein reveals that GPNMB has a regulatory effect on multiple immune effector functions, including capping inflammation and immune responses in myeloid cells via secretion of its ECF. Therefore, in progranulin-deficient states, the drastic upregulation in GPNMB transcript and protein may represent a compensatory mechanism to preserve lysosomal function in myeloid cells. These novel findings indicate that targeted depletion in FTD-GRN would not be a rational therapeutic strategy because it is likely to dysregulate important immune cell effector functions.
DOI: 10.6073/pasta/d62d4941d60d58472b5f11111735ca5e
title: Florida Longleaf Pine Surveys of Density and Growth Rates

description: The longleaf pine (Pinus palustris) ecosystem is an endangered global biodiversity hotspot that is a major focus of conservation and restoration efforts. However, most studies of longleaf habitats have not considered their distinct diversity, structure, and function among different communities, which are critical for developing appropriate management strategies. Florida has 51% of the remaining habitat, where it occurs in 5 unique community types. This dataset was collected from 82 plots (160 m2 each) in 23 sites across all 5 community types. We used modified variable area transects to collect data on tree density and growth rates. Tree rings were measured to the nearest 0.001 mm in CooRecorder and crossdated visually and statistically verified in COFECHA. Data was collected by N.Z. in 2018 while in graduate school at Florida State University.
DOI: 10.15468/dl.a4gpe3
title: Occurrence Download

description: A dataset containing 645 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Sex is Male",
 "TaxonKey is Erythrodiplax umbrata (Linnaeus, 1758)"
 ]
}

 The dataset includes 645 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028960-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mdg6mf
title: Occurrence Download

description: A dataset containing 317 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((119.29511 35.32697,119.06689 35.21849,118.80211 34.05923,120.84622 31.97959,122.03536 32.67338,121.48941 33.2072,119.29511 35.32697))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ciconia boyciana Swinhoe, 1873",
 "Year 2000-2024"
 ]
}

 The dataset includes 317 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028962-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.juy5kk
title: Occurrence Download

description: A dataset containing 355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kyrgyzstan",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ferula L."
 ]
}

 The dataset includes 355 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028963-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.saxc6g
title: Occurrence Download

description: A dataset containing 2167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Benin",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vitex doniana Sweet",
 "Year 2000-2024"
 ]
}

 The dataset includes 2167 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028965-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6yauq
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((119.29511 35.32697,119.06689 35.21849,118.80211 34.05923,120.84622 31.97959,122.03536 32.67338,121.48941 33.2072,119.29511 35.32697))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Grus japonensis (Statius Muller, 1776)",
 "Year 2000-2024"
 ]
}

 The dataset includes 224 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028966-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5522/04/26311972.v1
title: Research data for "Stabilization of symmetry-protected long-range entanglement in stochastic quantum circuits"

description: Includes the code and research results used to generate all figures in the article "Stabilization of symmetry-protected long-range entanglement in stochastic quantum circuits".Specifically, the Aaronson-Gottesman algorithm is used to simulate stochastic quantum circuits in one and two dimensions (1D periodic chain, 2D square lattice, and 2D Lieb lattice). The objective is to prepare long-range entangled quantum states (GHZ states) and assess the time needed for their preparation, as well as mitigate potential errors and cut down the prep time, if possible. We also provide a version of the code, where the unitary gates in the quantum circuit do not commute, which leads to the emergence of a measurement-induced entanglement transition.The programs (found in the "codes" folder) are written in C++ and can be used to generate all the results (found in the "results" folder). Compilation and running are described in the README.txt file.
DOI: 10.6084/m9.figshare.26324599
title: <b>Effects of Protein on Green Tea Quality in a Milk-Tea Model during Heat Treatment: Antioxidant Activity, Foaming Properties, and Unbound Small-molecule Metabolome</b>

description: This is supplementary materials for the article "<b>Effects of Protein on Green Tea Quality in a Milk-Tea Model during Heat Treatment: Antioxidant Activity, Foaming Properties, and Unbound Small-molecule Metabolome</b>", published in Journal of Dairy Science.
DOI: 10.6084/m9.figshare.26324599.v2
title: <b>Effects of Protein on Green Tea Quality in a Milk-Tea Model during Heat Treatment: Antioxidant Activity, Foaming Properties, and Unbound Small-molecule Metabolome</b>

description: This is supplementary materials for the article "<b>Effects of Protein on Green Tea Quality in a Milk-Tea Model during Heat Treatment: Antioxidant Activity, Foaming Properties, and Unbound Small-molecule Metabolome</b>", published in Journal of Dairy Science.
DOI: 10.6084/m9.figshare.26324599.v1
title: <b>Effects of Protein on Green Tea Quality in a Milk-Tea Model during Heat Treatment: Antioxidant Activity, Foaming Properties, and Unbound Small-molecule Metabolome</b>

description: This is supplementary materials for the article "<b>Effects of Protein on Green Tea Quality in a Milk-Tea Model during Heat Treatment: Antioxidant Activity, Foaming Properties, and Unbound Small-molecule Metabolome</b>", published in Journal of Dairy Science.
DOI: 10.6084/m9.figshare.26212937.v1
title: Supplementary Material for: Lymphocyte-to-Monocyte Ratio Predicts Survival for Intraductal Papillary Mucinous Neoplasm with Associated Invasive Carcinoma of the Pancreas: Results from a High-volume Center

description: Background: Intraductal papillary mucinous neoplasm (IPMN) is an important precursor lesion of pancreatic cancer. Systemic inflammatory parameters are widely used in the prognosis prediction of cancer; however, their prognostic implications in IPMN with associated invasive carcinoma (IPMN-INV) are unclear. This study aims to explore the prognostic value of systemic inflammatory parameters in patients with IPMN-INV.
Methods: From 2015 to 2021, patients with pathologically confirmed IPMN who underwent surgical resection at Peking Union Medical College Hospital were enrolled. The clinical, radiological and pathological data of the enrolled patients were collected and analyzed. Preoperative systemic inflammatory parameters were calculated as previously reported.
Results: Eighty-six patients with IPMN-INV met the inclusion criteria. The lymphocyte-to-monocyte ratio (LMR) was the only systemic inflammatory parameter independently associated with the cancer-specific survival (CSS). An LMR higher than 3.5 was significantly associated with a favorable CSS in univariate (hazard ratio (HR) 0.305, P = 0.003) and multivariate analyses (HR 0.221, P = 0.001). Other independently prognostic factors included the presence of clinical symptoms, cyst size, N stage and tumor differentiation. Additionally, a model including LMR was established for the prognosis prediction of IPMN-INV and had a C-index of 0.809.
Conclusions: Preoperative LMR could serve as a feasible prognostic biomarker for IPMN-INV. A decreased LMR (cutoff value of 3.5) was an independent predictor of poor survival for IPMN-INV.
DOI: 10.6084/m9.figshare.26325646
title: MRS UAV Experiments - UVDAR Marker Detection Dataset - Raw Camera Recordings

description: A dataset recorded during real-world UAV swarming and agile flight experiments in a desert environment at noon. The dataset consists of multiple UV camera recordings with a resolution of 752x480, taken at 60 FPS, containing 83914 8-bit raw image samples in total.Related paper: "Fast Marker Detection for UV-Based Visual Relative Localisation in Agile UAV Swarms".
DOI: 10.6084/m9.figshare.26325646.v1
title: UVDAR Marker Detection Dataset - MRS UAV Swarming Experiment ROSBag Recordings

description: A dataset recorded during real-world UAV swarming experiments in a desert environment at noon. The dataset consists of five raw recordings taken at 60 FPS and with an exposure interval of 500 μs, containing 83914 8-bit image samples in total.
DOI: 10.15468/dl.d2daec
title: Occurrence Download

description: A dataset containing 205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((119.29511 35.32697,119.06689 35.21849,118.80211 34.05923,120.84622 31.97959,122.03536 32.67338,121.48941 33.2072,119.29511 35.32697))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Grus japonensis (Statius Muller, 1776)",
 "Year 2014-2024"
 ]
}

 The dataset includes 205 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028967-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12773257
title: Are Biomass Feedstocks Sustainable? A Systematic Review of Three Key Sustainability Metrics
DOI: 10.5522/04/25512181
title: Linear trait measurements of Lake Tanganyika catfishes

description: Nine continuous head and body measurements and standard length (SL) were collected from individuals in each catfish radiation (claroteine and <i>Synodontis</i>), totalling 198 specimens. The claroteine dataset consisted of 135 specimens for 13 species, including three separate populations of <i>Lophiobagrus cyclurus</i>from Burundi, Kigoma and Zambia. The <i>Synodontis</i> dataset consisted of 63 specimens in 8 species (minimum 2, maximum 14, median 8.5 samples per species). Please refer to Peart et al. (2024) <i>Evolutionary </i><i>Journal</i><i> of the Linnean Society</i>, Supporting Information<i> </i>Table S1 for the full list of samples included.
DOI: 10.5522/04/25512181.v1
title: Linear trait measurements of Lake Tanganyika catfishes

description: Nine continuous head and body measurements and standard length (SL) were collected from individuals in each catfish radiation (claroteine and <i>Synodontis</i>), totalling 198 specimens. The claroteine dataset consisted of 135 specimens for 13 species, including three separate populations of <i>Lophiobagrus cyclurus</i>from Burundi, Kigoma and Zambia. The <i>Synodontis</i> dataset consisted of 63 specimens in 8 species (minimum 2, maximum 14, median 8.5 samples per species). Please refer to Peart et al. (2024) <i>Evolutionary </i><i>Journal</i><i> of the Linnean Society</i>, Supporting Information<i> </i>Table S1 for the full list of samples included.
DOI: 10.5522/04/25512184
title: Isotope data of Lake Tanganyika catfishes

description: Stable isotope values (δ<sup>15</sup>N) and carbon (δ<sup>13</sup>C) from white muscle tissue from 191 specimens of claroteine and <i>Synodontis</i> catfishes from Lake Tanganyika (Zambia). A total of 113 claroteine specimens (minimum 1, maximum 22, median 10 specimens per species) and 78 <i>Synodontis</i><i> </i>specimens (minimum 11, maximum 21, median 16 specimens per species) as well as a variety of pelagic and littoral basal resources. Please refer to Peart et al. (2024) <i>Evolutionary </i><i>Journal</i><i> of the Linnean Society</i>, Supporting Information<i> </i>Table S1 for the full list of samples included.
DOI: 10.5522/04/25512184.v1
title: Isotope data of Lake Tanganyika catfishes

description: Stable isotope values (δ<sup>15</sup>N) and carbon (δ<sup>13</sup>C) from white muscle tissue from 191 specimens of claroteine and <i>Synodontis</i> catfishes from Lake Tanganyika (Zambia). A total of 113 claroteine specimens (minimum 1, maximum 22, median 10 specimens per species) and 78 <i>Synodontis</i><i> </i>specimens (minimum 11, maximum 21, median 16 specimens per species) as well as a variety of pelagic and littoral basal resources. Please refer to Peart et al. (2024) <i>Evolutionary </i><i>Journal</i><i> of the Linnean Society</i>, Supporting Information<i> </i>Table S1 for the full list of samples included.
DOI: 10.5522/04/25512169
title: ostariophysian fishes nexus file

description: The ostariophysian matrix was constructed using 203 specimens from across the ostariophysians in 146 genera, with two outgroup taxa from the Clupeiformes for the nuclear molecular markers RAG1 exon 3, ENC1 and Plagl2. Please refer to Peart et al. (2024) <i>Evolutionary </i><i>Journal</i><i> of the Linnean Society</i>, Supporting Information<i> </i>Table S2a for the full list of samples included.
DOI: 10.5522/04/25512169.v1
title: ostariophysian fishes nexus file

description: The ostariophysian matrix was constructed using 203 specimens from across the ostariophysians in 146 genera, with two outgroup taxa from the Clupeiformes for the nuclear molecular markers RAG1 exon 3, ENC1 and Plagl2. Please refer to Peart et al. (2024) <i>Evolutionary </i><i>Journal</i><i> of the Linnean Society</i>, Supporting Information<i> </i>Table S2a for the full list of samples included.
DOI: 10.15468/dl.6mqsc5
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crossandra obanensis Heine"
 ]
}

 The dataset includes 9 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028970-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rdwhgd
title: Occurrence Download

description: A dataset containing 2960 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Serrasalmus rhombeus (Linnaeus, 1766)"
 ]
}

 The dataset includes 2960 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028969-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5522/04/25512175
title: 'Big Africa' catfish nexus file

description: The ‘Big Africa’ only phylogeny was constructed using 72 taxa based on RAG1 exon 3, ENC1 and Plagl2, RAG2 and the first and second codon positions of the mitochondrial sequences CO1 and <i>Cytb. </i>Please refer to Peart et al. (2024) <i>Evolutionary </i><i>Journal</i><i> of the Linnean Society</i>, Supporting Information<i> </i>Table S2a for the full list of samples included.
DOI: 10.5522/04/25512175.v1
title: 'Big Africa' catfish nexus file

description: The ‘Big Africa’ only phylogeny was constructed using 72 taxa based on RAG1 exon 3, ENC1 and Plagl2, RAG2 and the first and second codon positions of the mitochondrial sequences CO1 and <i>Cytb. </i>Please refer to Peart et al. (2024) <i>Evolutionary </i><i>Journal</i><i> of the Linnean Society</i>, Supporting Information<i> </i>Table S2a for the full list of samples included.
DOI: 10.15468/dl.hn6cs7
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parides burchellanus (Westwood, 1872)"
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028971-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.