cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.n7s5up
title: Occurrence Download

description: A dataset containing 12225017 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "DatasetKey is Observation.org, Nature data from around the World",
 "Geometry POLYGON((5.25286 53.15999,5.40482 52.80706,5.93783 52.72738,6.59626 52.63234,7.04776 52.58283,7.14809 52.76154,7.33736 52.98659,7.33736 53.23684,7.11288 53.39011,6.80287 53.53013,6.0439 53.58093,5.07113 53.47291,5.25286 53.15999))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12225017 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038857-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3769805_d1.v1
title: Additional file 10: of Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range

description: Summary of distribution of similar proteins with CAZyme domains encoded by the Venturia secretomes. CAZyme domains were identified using the CAZymes analysis toolkit (CAT) server. Filled grey boxes in columns indicate presence of a similar protein or proteins in that secretome identified by OrthoMCL clustering. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3769805_d1
title: Additional file 10: of Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range

description: Summary of distribution of similar proteins with CAZyme domains encoded by the Venturia secretomes. CAZyme domains were identified using the CAZymes analysis toolkit (CAT) server. Filled grey boxes in columns indicate presence of a similar protein or proteins in that secretome identified by OrthoMCL clustering. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3769805_d2.v1
title: Additional file 11: of Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range

description: Classification of proteases in the secretomes of the Venturia pathogens. Filled grey boxes in columns indicate presence of similar proteins in that secretome identified by OrthoMCL clustering: aspartate and serine (including those annotated as subtilases) proteases, metalloproteases and unclassified peptidases. Several of the proteases were similar (
DOI: 10.6084/m9.figshare.c.3769724_d13.v1
title: Additional file 21: of Transcriptome analysis of smut fungi reveals widespread intergenic transcription and conserved antisense transcript expression

description: Primers used in this study. (XLSX 244 kb)
DOI: 10.6084/m9.figshare.c.3769724_d12
title: Additional file 20: of Transcriptome analysis of smut fungi reveals widespread intergenic transcription and conserved antisense transcript expression

description: RT-PCR results supporting in silico analysis. (XLSX 242 kb)
DOI: 10.6084/m9.figshare.c.3769724_d12.v1
title: Additional file 20: of Transcriptome analysis of smut fungi reveals widespread intergenic transcription and conserved antisense transcript expression

description: RT-PCR results supporting in silico analysis. (XLSX 242 kb)
DOI: 10.6084/m9.figshare.c.3770735_d1.v1
title: Additional file 1: of What are the working mechanisms of a web-based workplace sitting intervention targeting psychosocial factors and action planning?

description: Dataset. Data collected and used in this study. (XLS 108Â kb)
DOI: 10.15468/dl.5634qy
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arnoglossus rueppelii (Cocco, 1844)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 82 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038898-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3770735_d1
title: Additional file 1: of What are the working mechanisms of a web-based workplace sitting intervention targeting psychosocial factors and action planning?

description: Dataset. Data collected and used in this study. (XLS 108Â kb)
DOI: 10.15468/dl.3fer7e
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sesleria juncifolia Suffren, Sesleria apennina Ujhelyi, Sesleria tenuifolia Schrad., Cynosurus juncifolius Wulfen, Sesleria ujhelyii Strgar, Sesleria tenuifolia var. istriaca Deyl, Cynosurus juncifolius Wulfen ex Mert. & W.D.J.Koch, Sesleria kalnikensis Jáv., Aira juncifolia Wulfen, Aira juncifolia Wulfen ex Kunth, Sesleria interrupta Vis., Sesleria tenuifolia subsp. kalnikensis (Jáv.) Deyl, Sesleria juncifolia subsp. kalnikensis (Jáv.) Jogan, Sesleria tenuifolia var. juncifolia (Suffren) Marches.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 158 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038899-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3770813_d2.v1
title: Additional file 2: of Inferring the physical properties of yeast chromatin through Bayesian analysis of whole nucleus simulations

description: Table listing all 144 models used for inference and their parameter values. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.c.3770771_d8
title: Additional file 6: of Genome-wide DNA methylation analysis reveals loci that distinguish different types of adipose tissue in obese individuals

description: Enrichment results for genes mapping to DMRs only observed in the after weight loss analysis. All pathways passing Bonferroni correction (Pâ  â ¤â  0.05) are shown. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3770771_d8.v1
title: Additional file 6: of Genome-wide DNA methylation analysis reveals loci that distinguish different types of adipose tissue in obese individuals

description: Enrichment results for genes mapping to DMRs only observed in the after weight loss analysis. All pathways passing Bonferroni correction (Pâ  â ¤â  0.05) are shown. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3770813_d2
title: Additional file 2: of Inferring the physical properties of yeast chromatin through Bayesian analysis of whole nucleus simulations

description: Table listing all 144 models used for inference and their parameter values. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.c.3770771_d9.v1
title: Additional file 7: of Genome-wide DNA methylation analysis reveals loci that distinguish different types of adipose tissue in obese individuals

description: Enrichment results for genes mapping to DMRs observed in both the before and after weight loss analyses. All pathways passing Bonferroni correction (Pâ  â ¤â  0.05) are shown. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3770771_d9
title: Additional file 7: of Genome-wide DNA methylation analysis reveals loci that distinguish different types of adipose tissue in obese individuals

description: Enrichment results for genes mapping to DMRs observed in both the before and after weight loss analyses. All pathways passing Bonferroni correction (Pâ  â ¤â  0.05) are shown. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3770813_d3.v1
title: Additional file 3: of Inferring the physical properties of yeast chromatin through Bayesian analysis of whole nucleus simulations

description: Table listing all image-based distance measurements used for parameter inference. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.c.3770771_d11.v1
title: Additional file 9: of Genome-wide DNA methylation analysis reveals loci that distinguish different types of adipose tissue in obese individuals

description: Summary of Pearson’s correlation data passing a P ≤ 0.001 threshold for comparison of Δbeta (subcutaneous adipose vs omentum) and Δclinical trait (before vs after weight loss). (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3770813_d4.v1
title: Additional file 4: of Inferring the physical properties of yeast chromatin through Bayesian analysis of whole nucleus simulations

description: Entire set of measured distances between nine pairs of loci used to analyze distance distributions. (XLSX 160 kb)
DOI: 10.5281/zenodo.14512702
title: test
DOI: 10.5281/zenodo.14512703
title: test
DOI: 10.6084/m9.figshare.c.3772022_d1.v1
title: Additional file 1: of European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures

description: Isolates analysed in this study including source, sequence depth and MLVA and MLST sequence types. * coverage is low but even: SNPs can be confidently called in most cases. ** Different genome and year of isolation to our isolate of the same name. †Also sequenced by Joseph et al. 2015 but with lower coverage. †† MTs differ from those derived in Laroucau et al. 2009, and were derived from and checked using NGS data. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3772013_d3.v1
title: Additional file 3: of Gene expression profile during proliferation and differentiation of rainbow trout adipocyte precursor cells

description: Significant biological functions associated with the differentiation phase of adipogenesis determined by IPA software. (XLSX 14 kb)
DOI: 10.60656/32cff3647faa4044
title: Custom collection of ice water content data from Bucharest, Chilbolton, Galați, Hyytiälä, Jülich, and 6 other sites on 7 Jan 2023
DOI: 10.15468/dl.6y2ead
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arnoglossus thori Kyle, 1913",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 235 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038900-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3772013_d3
title: Additional file 3: of Gene expression profile during proliferation and differentiation of rainbow trout adipocyte precursor cells

description: Significant biological functions associated with the differentiation phase of adipogenesis determined by IPA software. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3772022_d1
title: Additional file 1: of European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures

description: Isolates analysed in this study including source, sequence depth and MLVA and MLST sequence types. * coverage is low but even: SNPs can be confidently called in most cases. ** Different genome and year of isolation to our isolate of the same name. †Also sequenced by Joseph et al. 2015 but with lower coverage. †† MTs differ from those derived in Laroucau et al. 2009, and were derived from and checked using NGS data. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3772022_d2.v1
title: Additional file 2: of European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures

description: Recombination-associated genes identified within C. abortus. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3772022_d2
title: Additional file 2: of European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures

description: Recombination-associated genes identified within C. abortus. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3772052_d4.v1
title: Additional file 4: Table S4. of 
                     RUNX2 repeat variation does not drive craniofacial diversity in marsupials

description: Copywrite information for images used in the study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3772061_d2
title: Additional file 2: of Identification of differentially expressed Atlantic salmon miRNAs responding to salmonid alphavirus (SAV) infection

description: shows all primer sequences of primers used in the RT-qPCR along with R-square values and efficiency measurements. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3772061_d3.v1
title: Additional file 3: of Identification of differentially expressed Atlantic salmon miRNAs responding to salmonid alphavirus (SAV) infection

description: gives a complete overview of all results from RT-qPCR analysis showing the magnitude of change in each SAV-group compared to controls at each of the time points along with measurements of significance (adjusted p-values). All results from comparing different SAV groups within same time points are also summarized in Additional file 2. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3772052_d4
title: Additional file 4: Table S4. of 
                     RUNX2 repeat variation does not drive craniofacial diversity in marsupials

description: Copywrite information for images used in the study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3772061_d3
title: Additional file 3: of Identification of differentially expressed Atlantic salmon miRNAs responding to salmonid alphavirus (SAV) infection

description: gives a complete overview of all results from RT-qPCR analysis showing the magnitude of change in each SAV-group compared to controls at each of the time points along with measurements of significance (adjusted p-values). All results from comparing different SAV groups within same time points are also summarized in Additional file 2. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3772061_d4.v1
title: Additional file 4: of Identification of differentially expressed Atlantic salmon miRNAs responding to salmonid alphavirus (SAV) infection

description: shows all SAV responsive immune network genes that were included in the target gene analysis against the DE miRNAs (knowledge based approach. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3772061_d4
title: Additional file 4: of Identification of differentially expressed Atlantic salmon miRNAs responding to salmonid alphavirus (SAV) infection

description: shows all SAV responsive immune network genes that were included in the target gene analysis against the DE miRNAs (knowledge based approach. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3772061_d6.v1
title: Additional file 6: of Identification of differentially expressed Atlantic salmon miRNAs responding to salmonid alphavirus (SAV) infection

description: shows complete results from target gene predictions using all Atlantic salmon transcripts in Refseq, Genbank as input in the in silico analysis (holistic approach). (XLSX 220 kb)
DOI: 10.6084/m9.figshare.c.3772112_d1
title: Additional file 1: of A survey of proteomic biomarkers for heterotopic ossification in blood serum

description: Selection reaction monitoring (SRM) peptide transition parameters for protein candidates. Transition parameters and retention times of the 30 peptides were confirmed individually using an Agilent 6495 Triple Quadrapole Mass Spectrometer for both doubly and triply charged precursor ions. Five or 6 transitions per peptide precursor were selected for SRM analysis. In total, 350 transitions were optimized to identify and quantify 30 peptides. SRM target protein names, representative proteotypic peptide sequences, and SRM transition parameters are provided. (XLSX 68Â kb)
DOI: 10.6084/m9.figshare.c.3772112_d2
title: Additional file 2: of A survey of proteomic biomarkers for heterotopic ossification in blood serum

description: iTRAQ serum gene ontology enrichment analysis. All proteins quantified in the serum via iTRAQ were analyzed using BiNGO and cytoscape on June 23, 2016. An over-representation analysis, hypergeometric test with a Benjamini & Hochberg False Discovery Rate (FDR) correction, was executed with a significance level of &lt;0.05. (XLSX 130Â kb)
DOI: 10.15468/dl.d8xxn3
title: Occurrence Download

description: A dataset containing 4931412 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation)",
 "Continent is one of (Africa, Asia, Oceania, Europe, North America, South America)",
 "TaxonKey is Gastropoda"
 ]
}

 The dataset includes 4931412 records from 3568 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038791-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.iyxlzr
title: Occurrence Download

description: A dataset containing 3796 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Adoxaceae"
 ]
}

 The dataset includes 3796 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017748-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zjkwht
title: Occurrence Download

description: A dataset containing 105498 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "GadmGid is ESP.2_1",
 "Geometry POLYGON((-0.9715 40.0586,-0.50148 40.04893,-0.20994 41.1196,-0.82256 41.47057,-1.25583 41.49378,-1.71687 41.47778,-1.70263 40.04506,-0.9715 40.0586))",
 {
 "or" : [
 "PublishingOrg is 7b4f2f30-a456-11d9-8049-b8a03c50a862",
 "PublishingOrg is ebda1cab-dda8-418b-8f25-df1e71ff5bc2",
 "PublishingOrg is cb202839-87c6-456a-821c-dc5b268a200f",
 "PublishingOrg is 0363cbd4-f666-455e-8e86-0bbddcf51950",
 "PublishingOrg is 7338b4d9-d75b-4edb-b238-b09f52397f49",
 "PublishingOrg is da86174a-a605-43a4-a5e8-53d484152cd3",
 "PublishingOrg is 8209258a-80e8-4094-aba2-a3febe5ed45b",
 "PublishingOrg is 6f3ccc65-0a54-4e65-ae7e-13b92d618e7c",
 "PublishingOrg is 4c91866b-3c2e-4568-aca0-3ab0a1c1a45e",
 "PublishingOrg is c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f"
 ]
 },
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 105498 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184553-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3kepik
title: Occurrence Download

description: A dataset containing 168271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "Year 2013-2018",
 "Geometry POLYGON((12.499008178710936 55.60628125130211,12.580032348632809 55.60550550374785,12.60749816894531 55.62179298063114,12.666549682617186 55.637298574163,12.643203735351559 55.73406960018028,12.52510070800781 55.72943006127542,12.467422485351559 55.71860232605971,12.441329956054684 55.70931902037367,12.460556030273434 55.66751683835719,12.499008178710936 55.60628125130211))",
 {
 "or" : [
 "DatasetKey is DOF/BirdLife Denmark - Observations from DOFbasen",
 "DatasetKey is KTP Ring Data",
 "DatasetKey is iNaturalist Research-grade Observations",
 "DatasetKey is Biodiversity Now / Nature Check (Biodiversitet Nu / NaturTjek)",
 "DatasetKey is Bioblitz 2013 Copenhagen Denmark",
 "DatasetKey is Bioblitz 2014 Kalvebod Fælled, Denmark",
 "DatasetKey is Threatened species occurrences, Denmark 1991-2015",
 "DatasetKey is naturgucker"
 ]
 }
 ]
}

 The dataset includes 168271 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017750-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2c7pw
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melicoccus espiritosantensis Acev.-Rodr."
 ]
}

 The dataset includes 37 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179525-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wfs8ay
title: Occurrence Download

description: A dataset containing 24534 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence, Observation)",
 "TaxonKey is Imperata cylindrica (L.) P.Beauv."
 ]
}

 The dataset includes 24534 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049194-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ntsnnu
title: Occurrence Download

description: A dataset containing 11002 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Dataset of Phenology of flora of mediterranean high-mountains meadows (Sierra Nevada)"
 ]
}

 The dataset includes 11002 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017750-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jh5qea
title: Occurrence Download

description: A dataset containing 3033 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gerbillus gerbillus (Olivier, 1800)"
 ]
}

 The dataset includes 3033 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001623-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vuzynl
title: Occurrence Download

description: A dataset containing 7135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Caprifoliaceae"
 ]
}

 The dataset includes 7135 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017750-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bkpk9n
title: Occurrence Download

description: A dataset containing 2920 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tanakia lanceolata (Temminck & Schlegel, 1846))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2920 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049195-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ew8u5t
title: Occurrence Download

description: A dataset containing 772803 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-10.83398 40.68925,-8.06543 40.68925,-8.06543 42.3507,-10.83398 42.3507,-10.83398 40.68925))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 772803 records from 324 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0188400-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.