cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/tn6srpk8fj
title: Effects of Ovarian Cyst Types on Ovarian Reserve After Three-Dimensional Laparoscopic Cystectomy

description: Aim: Our study aims to compare the effect of three-dimensional (3D) laparoscopic ovarian cystectomy on ovarian reserve in terms of different cyst types.
Methods: Participants who will be treated surgically for ovarian cysts between 2018 and 2020 were included in our study. The participants' AMH and FSH levels were investigated before and 6 months after the surgery. All surgeries were performed under general anesthesia with a three-dimensional (3D) laparoscopy. After histopathological evaluation, the participants were divided into three groups; Group 1: Endometrioma, Group 2: Mature cystic teratoma (Dermoid cyst), and Group 3: Serous or mucinous cystadenoma.
Results: A total of fifty-one women were included in the study. No significant difference was found between the groups in terms of peri-operative findings as operation time, intraoperative blood loss, postoperative hemoglobin decreases, and maximum cyst diameter. There was no significant difference between the groups in terms of pre-operative AMH (p = 0.97) and pre-operative FSH (p = 0.22) values. Post-operative AMH values in endometrioma (p &lt;0.001) and dermoid cyst (p = 0.004) groups were significantly low compared to pre-operative AMH values. Pre- and post-operative AMH reduction was more pronounced in the endometriosis group than in other groups. The post-operative FSH levels in all groups tended to increase compared to pre-operative levels, but the increase did not reach a significant level (p = 0.092).
Conclusion: 3D laparoscopic cystectomy to remove endometrioma and dermoid cysts significantly reduces ovarian reserve (OR). Laparoscopic cystectomy for serous-mucinous cysts does not affect OR.
DOI: 10.17632/x24rjk9sfk
title: Data for: Resource-constrained multi-project scheduling with activity and time flexibility

description: The research dataset includes benchmark data for the resource-constrained project scheduling with alternative activity chains (RCPSP-AC) of Tao & Dong (2017), the new multi-project version (RCMPSP-AC) and a new version featuring multiple projects, activity chains and time flexibility (RCMPSP-ACTF).
DOI: 10.17632/yts7nxtyx4
title: COVID-19 Retractions June-November 2022

description: All data gathered from Retraction Watch Database, which was accessed in June and November 2022. The data show a higher total citation number per retracted article than would be expected based on the CiteScore of the journal they were published in. Data also show an increase in the number of citations for articles analyzed in both June and November. Tabs include "COVID Ret Data" which shows all retracted articles, "Inclusion only" which shows only articles meeting inclusion criteria within our manuscript, "Citations Jun vs Nov 2022" which compares citations between the two time periods and whether the articles have "retracted" or "withdrawn" prior to their title in Google Scholar, "Stratification (Ret Reason)" which was used to analyze the data based on reason for retraction and retracting party, "Charts" which was used to generated figures for the manuscript, and finally "Key" which was used to define variables for data collectors.
DOI: 10.17632/zfcsvvwghm
title: Why do pressure injuries still occur? A multi-centre qualitative study of nurses and caregivers

description: Supplementary Documents for Why do pressure injuries still occur? A multi-centre qualitative study of nurses and caregivers
DOI: 10.17632/7g9jk4jvz6
title: Estimated parameters of modelled heat and electric load profiles of non-residential buildings

description: This data is an online resource for the article "K. B. Lindberg, S. J. Bakker and I. Sartori. Modelling electric and heat load profiles of non‐residential buildings for use in long-term aggregate load forecasts. Utilities Policy, 2019" . The table presents the estimated values of the model parameters, including the p-value and overall R-squared of the 18 regression models. When applying the data together with the explanatory variables (outdoor temperature and 24-hour-moving average of the outdoor temperature), load profiles for each of the 18 building categories (7 regular and 2 efficient, both heat and electric specific load profiles) can be predicted. The heat load profiles reflect the heat demand of the building, that is the sum of space heating demand and domestic hot water demand. The consumption of electricity (if using a heat pump) or natural gas (if using a gas boiler) is found by dividing the heat load by the efficiency of the heat technology. The electric load profiles reflect the electric specific demand of the building, that is demand that cannot be met by any other energy carrier than electricity. For example electricity used for lighting, electric appliances, washing machines, dishwashers, fans and pumps.
DOI: 10.6084/m9.figshare.22705294.v1
title: MGE Sequence

description: Integrases and transposases sequences were conducted by searching the protein sequences in NCBI RefSeq database (https://www.ncbi.nlm.nih.gov/refseq/). Insertion sequences (ISs) elements sequences were conducted by ISfinder database.
DOI: 10.6084/m9.figshare.4004913.v1
title: Supplementary Material for: Fluoxetine Treatment Rescues Energy Metabolism Pathway Alterations in a Posttraumatic Stress Disorder Mouse Model

description: <br>Posttraumatic stress disorder (PTSD) is a prevalent psychiatric disorder. Several studies have attempted to characterize molecular alterations associated with PTSD, but most findings were limited to the investigation of specific cellular markers in the periphery or defined brain regions. In the current study, we aimed to unravel affected molecular pathways/mechanisms in the fear circuitry associated with PTSD. We interrogated a foot shock-induced PTSD mouse model by integrating proteomics and metabolomics profiling data. Alterations at the proteome level were analyzed using in vivo <sup>15</sup>N metabolic labeling combined with mass spectrometry in the prelimbic cortex (PrL), anterior cingulate cortex (ACC), basolateral amygdala, central nucleus of the amygdala and CA1 of the hippocampus between shocked and nonshocked (control) mice, with and without fluoxetine treatment. In silico pathway analyses revealed an upregulation of the citric acid cycle pathway in PrL, and downregulation in ACC and nucleus accumbens (NAc). Chronic fluoxetine treatment prevented decreased citric acid cycle activity in NAc and ACC and ameliorated conditioned fear response in shocked mice. Our results shed light on the role of energy metabolism in PTSD pathogenesis and suggest potential therapy through mitochondrial targeting.
DOI: 10.6084/m9.figshare.5765496.v1
title: Summary Data Files

description: These are the summary data files for both human and monkey data. See the user guide for individual descriptions.<br>Control data summaries can be generated with the scripts provided in this collection (see user guide).
DOI: 10.17632/7w4cb4mdd4
title: Allele frequency data for SNPs on a combined-species SNP array for European seabass and gilthead seabream

description: SNP arrays are enabling tools for high-resolution studies of the genetic basis of complex traits, and for incorporating genetic markers to expedite genetic gain in selective breeding programmes. The European seabass (Dicentrarchus labrax) and the gilthead seabream (Sparus aurata) are two primary fish species of importance for Mediterranean aquaculture. The aim of our study was to design a combined-species, 60K SNP array for the European seabass and the gilthead seabream, and to test its performance on farmed and wild populations from multiple locations throughout the Mediterranean. The data presented here are part of the validation process of the abovementioned platform and represents the allele frequencies of the SNPs on the array that were genotyped across 23 European seabass and 26 gilthead seabream populations sampled mainly from the Mediterranean Sea. The data comprises two text files, one for each fish species. Each file contains seven tab separated columns that indicate: chromosome/scaffold ID (1st column), position of the SNP (2nd column), SNP ID (3rd column), reference allele (4th column), alternate allele (5th column), the number of individuals successfully genotyped (6th column) and the average allele frequency of the SNP (7th column). The data shows that the majority of the SNPs on the platform are highly polymorphic across the sampled European seabass and gilthead seabream populations. The allele frequency information can be used to generate low-density panels to perform genetic research in both fish species.
DOI: 10.6084/m9.figshare.12792890.v1
title: Pancreatic cancer cells (MIA) cocultured with pancreatic cancer ctDNA

description: Whole genome sequencing data generated on pancreatic cells cocultured with circulating tumor DNA from a pancreatic cancer patient.The sequence underwent de novo assembly using SPADES 3.12.0This file is the contigs.fasta output from the SPADES assembly on the WGS data.
DOI: 10.6084/m9.figshare.28660535.v1
title: UCM 187.21 digital model and image set

description: UCM 187.21 pterosaur tracks<i>Pteraichnus </i>isp.Summerville Formation, Klondike BluffsOxfordian, Upper Jurassic
DOI: 10.6084/m9.figshare.28862963.v1
title: Figure 1. Positive correlation between social competence and academic performance

description: This figure illustrates a simulated positive correlation between social competence and academic performance, based on the findings reported by Tabassum, Akhter, and Iqbal (2020). Created using Python matplotlib.
DOI: 10.17632/6zpxnhjxzz
title: Blood Smear Images Dataset for AI-based Malaria Parasite Prediction

description: The Dataset contain two categories of data: 
1. Raw Dataset: This contain the blood smear images with both negative and positive cells
2. The Annotated folder: This contain blood smear images with the equivalent annotation
DOI: 10.17632/8854gnh9rw
title: Synthetic dataset of 3D head models and anthropometric landmarks

description: This repository presents the dataset described in the article "Anthropometric Landmark Detection in 3D Head Surfaces Using a Deep Learning Approach", published in IEEE Journal of Biomedical and Health Informatics (2021). The dataset comprises synthetic head models (STL files) and the respective anthropometric landmarks (Matlab files). The main goal of this dataset is to promote the development of methods to assess head shape.
DOI: 10.5061/dryad.10351qn
title: Data from: The adhesion function of the sodium channel beta subunit (β1) contributes to cardiac action potential propagation
DOI: 10.6084/m9.figshare.3551739.v1
title: Appendix D. Life table response experiment (LTRE) details.

description: Life table response experiment (LTRE) details.
DOI: 10.6084/m9.figshare.5212603.v1
title: Lifestyle dictionary

description: Lifestyle dictionary used for named entity recognition of lifestyle factors associated with diseases.
DOI: 10.6084/m9.figshare.8224130.v1
title: Supplementary Material for: A Case-Control Study of the Association of the Polymorphisms of <b><i>MTHFR</i></b> and <b><i>APOE</i></b> with Risk Factors and the Severity of Coronary Artery Disease

description: <b><i>Objectives:</i></b> To explore the association between single-nucleotide polymorphisms (SNPs) in <i>MTHFR</i> and <i>APOE</i> and the risk of CAD and, more importantly, the severity of CAD and the profile of serum lipids, we performed a case-control study in a Chinese Han population. <b><i>Methods:</i></b> A total of 1,207 cases of consecutive CAD-suspected inpatients were recruited, and 406 CAD cases and 231 non-CAD controls were enrolled for the final analysis after screening for exclusion criteria. All subjects had undergone coronary angiography, and the severity of CAD was evaluated by 2 cardiologists according to the Gensini scores. The genotypes of <i>MTHFR</i> and <i>APOE</i>were detected using real-time PCR, and then verified by Sanger sequencing. Environmental risk factors, such as age, sex, smoking, alcohol consumption, hypertension, diabetes, dyslipidemia, and BMI were collected. Statistical analyses (the χ<sup>2</sup> test, binary logistic regression analysis, and ordinal polytomous logistic regression analysis) were performed with SPSS v16.0. <b><i>Results:</i></b> The genotypes of<b><i></i></b>all the subjects included in the CAD and non-CAD groups in this study were successfully detected, with an agreement of 100% with Sanger sequencing. The distributions of genotypes<i> CT</i> and <i>TT</i> at <i>MTHFR C667T</i> were higher in CAD cases than in non-CAD controls (OR 1.99, 95% CI 1.34–2.95; OR 1.77, 95% CI 1.18–2.67; <i>p</i> &lt; 0.05), whereas genotype <i>AC</i> at <i>MTHFR A1298C</i>was lower in CAD cases (OR 0.71, 95% CI 0.50–1.02; <i>p</i> &lt; 0.05). A significant association was observed in genotypes <i>CT</i> and <i>TT</i> at <i>MTHFR C667T</i> and the risk of CAD (OR 1.44, 95% CI 1.27–3.67; OR 1.56, 95% CI 0.88–2.78;<i> p</i> &lt; 0.05). Both genotypes and alleles of <i>APOE</i> were comparable in the CAD cases and non-CAD controls (<i>p</i> &gt; 0.05). The genotype <i>TT</i> at <i>MTHFR C667T</i> and ε4<i>+</i> at <i>APOE</i> were more likely to be found in the CAD subgroup with a Gensini score ≥72 (<i>p</i> = 0.040 and <i>p</i> = 0.028, respectively). Meanwhile, in the patients with genotype <i>TT</i>,<i></i>a higher level of serum Hcy was detected, while genotype ε4+ patients possessed higher levels of serum apolipoprotein E (ApoE) and low-density lipoprotein cholesterol (LDL-C) than other genotypes. <b><i>Conclusion:</i></b> This study revealed that the SNP site of <i>MTHFR C667T</i>is associated<i></i>with the risk of CAD in this Chinese Han population. In addition, the genotypes of <i>TT</i> in <i>MTHFR C667T</i> and ε4<i>+</i>in <i>APOE</i> may increase the severity of CAD, and higher Hcy, LDL-C, and ApoE levels may be involved in this pathogenic process.
DOI: 10.17632/kggw362x4z
title: Soil moisture

description: The soil moisture data used in the study
DOI: 10.17632/94fk36x2b7
title: Qualification of an Inductively Coupled Plasma Mass Spectrometry (ICP-MS) Semi-quantitative Method used for Analysis of Extractables and Leachables from Medical Devices, Medical Device Componentry and Other Associated Materials

description: This technical note summarizes the qualification of a ICP-MS method for use in elemental extractables testing from medical devices and medical device componentry.
DOI: 10.17632/w8263v4vkr
title: Sustainable supply network operational planning Investigational input Data

description: The global awakening is increasing to protect environment and to consider social dimension with economic growth. Due to the government legislations in this direction, supply networks for the manufacturing are facing obligation to include economic, social & environmental aspects for operational planning. The present work developed a model for Supply Network Operational (SOSN) Sustainable planning for retreading companies including the features such as uncertainty , business profit, environmental performance (carbon discharge policies) & social aspect.
DOI: 10.25452/figshare.plus.27098065.v1
title: Pre-processed neural and behavioral data, including raw fluorescence

description: This dataset contains pickled Python files of pre-processed neural and behavioral data, for each experimental day, used throughout: Sosa, Plitt, Giocomo. 2025. A flexible hippocampal population code for experience relative to reward. <i>Nature Neuroscience</i>. https://doi.org/10.1038/s41593-025-01985-4Hippocampal neurons were recorded in dorsal CA1 using 2-photon calcium imaging and synchronized with virtual reality (VR) behavior in head-fixed mice. This data is referred to as "pre-processed" because raw imaging and VR sessions have been aligned, imaging data have been curated in suite2p, dF/F has been calculated from the raw fluorescence, and place cells have been classified by spatial information computed from deconvolved 'events' compared to the shuffled spatial information scores within animal, but no other analyses have been run. Raw fluorescence and neuropil fluorescence for each cell's region of interest are included, giving the user the option to re-extract dF/F using a different method or parameters if desired. The <code>pickle</code> or <code>dill</code> package in Python is required to load this dataset. The data loaded from these files is referred to as <code>multi_anim_sess</code> in the code. See the code base on Github for usage and additional documentation, particularly this README describing the file contents.See the accompanying dataset: Post-processed neural and behavioral data class with reward-relative cells identified.<br><br>File name format: [list-of-mouse-numbers]_expday[day number]_speed[speed threshold below which neural data are excluded for place cell calculations, in cm/s]_perms[number of shuffles for spatial information comparison]<i>_</i>[maximin = baseline method for dF/F]<i>_</i>[events = type of data (deconvolved activity events) used to calculate spatial information]<br>The pickle file is a Python dictionary, where each entry of the dictionary corresponds to an individual animal's dictionary. Days numbered [3, 5, 7, 8, 10, 12, 14], corresponding to "switch" days in the paper, in which a hidden reward zone "switched" locations on a virtual linear track.Place cells were identified separately within two trials sets: "set 0" for before the reward switch, and "set 1" for after the reward switch. In animals without a reward switch, "set 0" and "set 1" correspond to the 1st and 2nd half of trials, respectively.<br><br>
DOI: 10.6084/m9.figshare.3518798.v1
title: Appendix C. Results for statistical analyses of AMF treatments on plant biomass and AMF colonization on plant traits.

description: Results for statistical analyses of AMF treatments on plant biomass and AMF colonization on plant traits.
DOI: 10.17632/6szdbhrbg7
title: Institutional arrangements matter for tax cooperation: An experiment of sanctioning order in public goods

description: This is the database and Stata commands used to generate the results obtained on the paper with the same name (currently under review)
DOI: 10.17632/fj3y6c58dy
title: BSHF: A program to solve the Hartree–Fock equations for arbitrary central potentials using a B-spline basis

description: BSHF solves the Hartree–Fock equations in a B-spline basis for atoms, negatively charged ions, and systems of N electrons in arbitrary central potentials. In the B-spline basis the Hartree–Fock integro-differential equations are reduced to a computationally simpler eigenvalue problem. As well as solving this for the ground-state electronic structure self-consistently, the program can calculate discrete and/or continuum excited states of an additional electron or positron in the field of the frozen-target N-electron ground state. It thus provides an effectively complete orthonormal basis that can be used for higher-order many-body theory calculations. Robust and efficient convergence in the self-consistent iterations is achieved by a number of strategies, including by gradually increasing the strength of the electron–electron interaction by scaling the electron charge from a reduced value to its true value. The functionality and operation of the program is described in a tutorial style example.
DOI: 10.6084/m9.figshare.23849010.v1
title: Not just range limits: warming rate and thermal sensitivity shape climate change vulnerability in a species range centre

description: Raw and cleaned data associated with Beaty et al. 2023 publication titled under the same name. In this publication, the intraspecific variability in thermal sensitivity of two populations of a marine snail, <i>Nucella lamellosa,</i> was measured using a mesocosm experiment and reciprocal transplant. Growth, feeding rate, and survival were measured along with environmental parameters (e.g., temperature, pH, salinity) in both the lab and field experiments. The three mesocosm datasets provide the raw growth, survival, and per capita feeding data for snails involved in the mesocosm experiment. The reciprocal transplant dataset includes the growth and survival data for all snails involved in the 2019 reciprocal transplant across the four study sites. The weight regressions csv provides submerged and dry snail weight to estimate regression relationships per source population.
DOI: 10.6084/m9.figshare.25954711.v1
title: Dataset for Correlation Analysis and Multiple Comparisons

description: This dataset contains data from a pilot study that quantitatively measured the developmental characteristics of deictic verb use in Japanese-speaking children.The dataset includes two SPSS files:<b>240603Correlations among three variables.sav</b>: Results of the correlation analysis among linguistic responses, body movements based on actual directions, and the amount of body movement.<b>240603Multiple comparisons of number of correct responses.sav</b>: Results of the multiple comparison analysis of the number of correct responses to four types of question sentences.This dataset is useful for researching language acquisition, cognitive development, and the relationship between language and body movements in Japanese-speaking children.
DOI: 10.17632/2nt447bcbw
title: Universidad de Santander - Colombia. Balance de los resultados de Investigación 2017-2022

description: Objetivo del informe:
Analizar la evolución de los resultados de investigación, en especial los que se derivan de la producción de artículos científicos y esfuerzo de innovación, y su impacto científico, innovación, visibilidad y societal.
Fuente de datos:
Los datos han sido generados a partir de Scopus y la Oficina Europea de Patentes, y analizados con herramientas de SCImago y SciVal. Se usaron indicadores comúnmente aceptados, los que dan un panorama comprensivo de los resultados en diferentes niveles de significancia. La ventana de observación utilizada es 2017-2022.  Los datos 2022 son provisionales.
DOI: 10.17632/djsrjn5yww
title: Construction of cold-set Mickering emulsion gel using whey protein assembly particles as oil-water interfacial stabilizer and gelling agent: Phase stability, nonlinear rheology, and tribology

description: The current dataset includes supplementary data for the manuscript titled "Construction of cold-set Mickering emulsion gel using whey protein assembly particles as oil-water interfacial stabilizer and gelling agent: Phase stability, nonlinear rheology, and tribology".
DOI: 10.17632/w4d97jr7tb
title: Survey data on supply chain resilience，flexibility and reconfiguration of Chinese non-manufacturing SMEs

description: Survey data on supply chain resilience，flexibility and reconfiguration of Chinese non-manufacturing SMEs
DOI: 10.6084/m9.figshare.1537420.v1
title: Striving for Excellence Sometimes Hinders High Achievers - Databases, Codebooks, and Syntaxes

description: Data_Experiment1.sav: Database (SPSS file) for Experiment 1. Codebook_Experiment1: .xls file that recapitulates meannings of each label mentioned in the Database. Syntax_Experiment1: Syntax with the filter and main analysis commands (SPSS file). Data_Experiment2.sav: Database (SPSS file) for Experiment 2. Codebook_Experiment2: .xls file that recapitulates meannings of each label mentioned in the Database. Syntax_Experiment2: Syntax with the filter and main analysis commands (SPSS file).