cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.v15dv41xr
title: Morphological and olfactory tree traits influence the susceptibility and suitability of the apple species Malus domestica and M. sylvestris to Anthonomus pomorum

description: The florivorous apple blossom weevil, Anthonomus pomorum (Coleoptera:
 Curculionidae), is the most economically relevant insect pest of European
 apple orchards in early spring. Neither efficient monitoring nor
 ecologically sustainable management of this insect pest has yet been
 implemented. To identify heritable traits of apple trees that might
 influence host selection of A. pomorum, we compared susceptibility of
 apple tree species using infestation rates of the domesticated apple,
 Malus domestica (Rosaceae: Pyreae), and the European crab apple, M.
 sylvestris. We evaluated the suitability of the two apple species for A.
 pomorum by quantifying the mass of weevil offspring. Because volatile
 organic compounds (VOCs) emitted from flower  buds of
 domesticated apple have previously been suggested to mediate female weevil
 preference via olfactory cues, we conducted bioassay experiments with
 blossom buds of both apple species to explore the olfactory preference of
 adult weevils and, furthermore, identified the headspace VOCs of blossom
 buds of both apple species through GC-MS analysis. The infestation
 analysis showed that A. pomorum infested the native European crab apple
 stronger than the domesticated apple, which originated from Central Asia.
 The European crab apple also appeared to be better suited for weevil
 larval development than the domesticated apple, as weevils emerging from
 M. sylvestris had a higher body mass than those emerging from M.
 domestica. These field observations were supported by olfactory bioassays,
 which showed that A. pomorum significantly preferred the odor of M.
 sylvestris buds compared to the odor of M. domestica buds. The analysis of
 headspace VOCs indicated differences in the blossom bud volatiles
 separating several M. domestica individuals from M. sylvestris
 individuals. This knowledge might be employed in further studies to repel
 A. pomorum from M. domestica blossom buds.
DOI: 10.5061/dryad.fxpnvx0tp
title: Capture history of Asiatic black bear from Himachal Pradesh, India

description: Robust population estimation of rare or elusive threatened species lacking
 distinct identifiable features poses a challenge in the field of
 conservation and management. The Asiatic black bear (Ursus thibetanus) is
 one such species. Methodological frameworks—such as radiotelemetry,
 genetic sampling, and camera-trapping—though crucial and advantageous,
 sometimes require additional information through invasive methods for
 individual identification. In this study, we estimated the population
 density of Asiatic black bear in 2 protected areas in the Indian Himalayan
 Region without information on individual identification. We conducted the
 study through a spatial capture–recapture framework using camera traps in
 the summer during May–July 2018 in Daranghati Wildlife Sanctuary (WLS) and
 May–July 2019 in Rupi Bhaba WLS. Using the recently developed Spatial
 Presence–Absence model, we estimated g0 (detection probability), σ (scale
 or movement parameter related to home range of the species), and N
 (population size) of Asiatic black bears from the camera-trap data using a
 Bayesian framework. We estimated a population density of 2.5
 individuals/100 km2 (95% Credible Interval = 1.42–9.63 individuals/100
 km2) from Daranghati WLS and 0.3 individuals/100 km2 (95% Credible
 Interval = 0.2–0.7 individuals/100 km2) from Rupi Bhaba WLS. Abundance
 estimates produced by extrapolating these densities were 11 Asiatic black
 bear individuals (95% Credible Interval = 4–27) from Daranghati WLS and 2
 Asiatic black bear individuals (95% Credible Interval = 1–3) from Rupi
 Bhaba WLS. This is the first population estimate of Asiatic black bear
 from the Indian Himalaya without individual identification. We recommend
 that this method, which provides minimal sampling bias and ease of
 sampling, can be replicated in other mountainous landscapes for a robust
 density estimation of this species.
description: The data was collected using deploying camera traps in different
 protected areas of Himachal Pradesh. The motion-triggered camera was
 deployed for 40-50 days to detect the presence of different mammals in the
 areas. Once the camera trap sampling is done, the data
 is processed the accumulate the presence of the animals using a sampling
 window of 24 hours.
description: There are three different values in the dataset. 1 denotes when
 the species is detected and 0 when the species is not detected. The NA
 denotes when the camera was not active a the sampling site.
DOI: 10.15468/dl.nmnezm
title: Occurrence Download

description: A dataset containing 318 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((105 20,170 20,170 70,105 70,105 20))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Galium triflorum"
 ]
}

 The dataset includes 318 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003067-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.qv9s4mwgm
title: Hoplodactylus duvaucelii sequencing reads (FastQ) - modern, historic and ancient

description: Methodological and technological improvements are continually
 revolutionizing the field of ancient DNA. Most ancient DNA extraction
 methods require the partial (or complete) destruction of finite museum
 specimens, which disproportionately impacts small or fragmentary subfossil
 remains, and future analyses. We present a minimally destructive ancient
 DNA extraction method optimized for small vertebrate remains. We applied
 these methods to detect lost mainland genetic diversity in the large New
 Zealand diplodactylid gecko genus Hoplodactylus, which
 is presently restricted to predator-free island and mainland
 sanctuaries. We present the first mitochondrial genomes for New
 Zealand diplodactylid geckos, recovered from 19 modern, six
 historic/archival (1898 to 2011) and 16
 Holocene Hoplodactylus duvaucelii sensu
 latu specimens, and one modern Woodworthia sp.
 specimen. No obvious damage was observed in post-extraction micro-CT
 reconstructions. All ‘large gecko’ specimens examined from extinct
 populations were found to be conspecific with
 extant Hoplodactylus species, suggesting their large
 relative size evolved only once in the New Zealand diplodactylid
 radiation. Phylogenetic analyses
 of Hoplodactylus samples recovered two genetically (and
 morphologically) distinct North and South Island clades, probably
 corresponding to distinct species. Finer phylogeographic structuring
 within Hoplodactylus spp. highlighted the
 impacts of Late-Cenozoic biogeographic barriers, including the opening and
 closure of Pliocene marine straits, fluctuations in size and suitability
 of glacial refugia, and eustatic sea-level change. Recent mainland
 extinction obscured these signals from the modern tissue derived
 data. These results highlight the utility of minimally
 destructive DNA extraction in genomic analyses of less well studied small
 vertebrate taxa, and the conservation of natural history collections.
description: This
 dataset contains the unprocessed fastQ files generated from modern (n =
 19), historic (n = 6) and ancient (n = 16)<em> Hoplodactylus
 duvaucelii </em>specimens; with the former sequenced an Illumina
 MiSeq (Otago Genomics) using 2 × 150 bp (paired-end) sequencing chemistry,
 and the latter two on an Illumina NextSeq using 2 x 75bp (paired-end)
 sequencing chemistry and custom sequencing primers.
DOI: 10.6078/d1sm5h
title: Isolation controls reestablishment mechanisms and post-drying community structure in an intermittent stream

description: Biota in disturbance-prone landscapes have evolved a variety of strategies
 to persist long term, either locally (resistance) or by regional
 recolonization (resilience). Habitat fragmentation and isolation can limit
 the availability of recolonization pathways, and thus the dynamics of
 community reestablishment. However, empirical studies on how isolation may
 control the mechanisms that enable community recovery remain scarce. Here,
 we studied a pristine intermittent stream (Chalone Creek, Pinnacles
 National Park, California) to understand how isolation (distance from a
 perennial pool) alters invertebrate community recolonization after drying.
 We monitored benthic invertebrate reestablishment during the rewetting
 phase along a ~2-km gradient of isolation, using mesh traps that selected
 for specific recolonization pathways (i.e., drift, flying,
 swimming/crawling, and vertical migration from the hyporheic). We
 collected daily emigration samples, surveyed the reestablished benthic
 community after 6 weeks, and compared assemblages across trap types and
 sites. We found that isolation mediated migration dynamics by delaying
 peak vertical migration from the hyporheic by ca. 1 day on average per 250
 m of dry streambed. The relative importance of reestablishment mechanisms
 varied longitudinally–with more resistance strategies (up to 99.3% of
 encountered individuals) in the upstream reaches, and increased drift and
 aerial dispersal in the more fragmented habitats (up to 17.2% and 18%
 respectively). Resistance strategists persisting in the hyporheic
 dominated overall (88.2% of individuals, ranging 52.9%–99.3% across
 sites), but notably, most of these organisms subsequently outmigrated
 downstream (85.6% on average; ranging 52.1%–96% across sites). Thus,
 contrary to conventional wisdom, resistance strategists largely
 contributed to downstream resilience as well as to local community
 recovery. Finally, increased isolation was associated with a general
 decrease in benthic invertebrate diversity, and a 3-fold increase in the
 relative abundance of drought-resistant stoneflies. Our results advance
 the notion that understanding spatial context is key to predicting
 post-disturbance community dynamics. Considering the interaction between
 disturbance and fragmentation may help inform conservation in ecosystems
 that are subject to novel environmental regimes.
DOI: 10.5281/zenodo.18399791
title: DATASET FOR STUDY: Test–Retest Reliability of Postural Sway Measures Using a Portable Low-Cost Force Plate

description: Objective: To investigate the test-retest reliability of center of pressure (CoP) parameters during bipedal and unipedal stance in healthy individuals using low-cost force plates system. Methods: A total of 27 healthy adults completed two laboratory sessions 7-10 days apart, performing three 30-second bipedal and three 30-second unipedal stance trials on each leg per session. Postural sway was recorded using a portable force plate while participants stood barefoot, maintained visual fixation, and held their hands on their hips. Results: Unipedal stance demonstrated consistently higher reliability (ICC > 0.85 for total CoP displacement displacement velocity) compared to bipedal stance, which showed poor reliability (low ICC) with exceptionally high within-subject variability (CV > 60% for ellipse area). Conclusion: Bipedal quiet standing is unsuitable for longitudinal balance assessment due to its low reliability. The unipedal stance, as a more challenging postural task, provides more reliable and robust measures of postural control, with total CoP displacement and sway velocity being the most stable indicator. Low-cost force plates showed as objective balance assessment tool through postural sway measurement accessible for wider clinical and research use.
DOI: 10.5281/zenodo.18399792
title: DATASET FOR STUDY: Test–Retest Reliability of Postural Sway Measures Using a Portable Low-Cost Force Plate

description: Objective: To investigate the test-retest reliability of center of pressure (CoP) parameters during bipedal and unipedal stance in healthy individuals using low-cost force plates system. Methods: A total of 27 healthy adults completed two laboratory sessions 7-10 days apart, performing three 30-second bipedal and three 30-second unipedal stance trials on each leg per session. Postural sway was recorded using a portable force plate while participants stood barefoot, maintained visual fixation, and held their hands on their hips. Results: Unipedal stance demonstrated consistently higher reliability (ICC > 0.85 for total CoP displacement displacement velocity) compared to bipedal stance, which showed poor reliability (low ICC) with exceptionally high within-subject variability (CV > 60% for ellipse area). Conclusion: Bipedal quiet standing is unsuitable for longitudinal balance assessment due to its low reliability. The unipedal stance, as a more challenging postural task, provides more reliable and robust measures of postural control, with total CoP displacement and sway velocity being the most stable indicator. Low-cost force plates showed as objective balance assessment tool through postural sway measurement accessible for wider clinical and research use.
DOI: 10.15468/dl.scgvp8
title: Occurrence Download

description: A dataset containing 15300330 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Macro-moth distribution records for the UK from Butterfly Conservation, up to 2019",
 "TaxonKey is Noctuidae",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 15300330 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003077-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7280/d1j10m
title: Distinct colon mucosa microbiomes associated with Tubular Adenomas and Serrated Polyps

description: Background: Colorectal cancer is the second most deadly and third most
 common cancer in the world. Its development is heterogenous, with multiple
 mechanisms of carcinogenesis. Two distinct mechanisms include the
 adenoma-carcinoma sequence and the serrated pathway. The gut microbiome
 has been identified as a key player in the adenoma-carcinoma sequence, but
 its role in serrated carcinogenesis is less clear. In this study, we
 characterized the gut microbiome of 140 polyp-free and polyp-bearing
 individuals using colon mucosa and fecal samples to determine if
 microbiome composition was associated with each of the two key pathways.
 Methods: Characterization of the gut microbiome was performed
 using a combination of amplicon and shotgun sequencing. Microbial taxonomy
 was assigned, and we compared the diversity and composition of different
 sampling methods within the same individual. Additionally, we also
 compared the microbial diversity and composition of mucosal samples from
 polyp-free, tubular adenoma, and serrated polyp-bearing individuals.
 Shotgun samples were also cross-assembled into contiguous sequences to
 examine the functional potential of microbial metagenomes. 
 Results: We discovered significant differences between the microbiomes of
 colon mucosa and fecal samples, with sample type explaining 14% of the
 variation observed in the microbiome. Multiple mucosal samples were
 collected from each individual to investigate whether the gut microbiome
 differed between polyp and healthy intestinal tissue, but no differences
 were found. Colon mucosa sampling revealed that the microbiomes of
 individuals with tubular adenomas and serrated polyps were significantly
 different from each other and polyp-free individuals, explaining 2-10% of
 the variance in the microbiome. Further analysis revealed differential
 abundances of 6 microbes and 1,143 microbial genes across tubular adenoma,
 serrated polyp, and polyp-free cases.
DOI: 10.7280/d1d99j
title: Data from: Comparative impacts of long-term trends in snowmelt and species interactions on plant population dynamics

description: Climate change can impact plant fitness and population persistence
 directly through changing abiotic conditions and indirectly through its
 effects on species interactions. Pollination and seed predation are
 important biotic interactions that can impact plant fitness, but their
 impact on population growth rates relative to the role of direct climatic
 effects is unknown. We combined 13 years of experiments on pollen
 limitation of seed set and pre-dispersal seed predation in Ipomopsis
 aggregata, a subalpine wildflower, with a long-term demographic study that
 has documented declining population growth with earlier spring snowmelt
 date. We determined how pollen limitation and seed predation changed with
 snowmelt date over 21 years and incorporated those effects into an
 integral projection model to assess relative impacts of biotic factors on
 population growth. Both pollen limitation and the difference in stigma
 pollen load between pollen-supplemented and control plants declined over
 years. Neither pollen limitation nor seed predation changed detectably
 with snowmelt date, suggesting an absence of indirect effects of that
 specific abiotic factor on these indices of biotic interactions. The
 projected biotic impacts of pollen limitation and seed predation on
 population growth rate were small compared to factors associated with
 snowmelt date. Providing full pollination would delay the projected date
 when earlier snowmelt will cause populations to fall below replacement by
 only 14 years. Synthesis. Full pollination and elimination of seed
 predation would not compensate for the strong detrimental effects of early
 snowmelt on population growth rate, which in I. aggregata appears driven
 largely by abiotic environmental factors. The reduction over two decades
 in pollen limitation also suggests that natural selection on floral traits
 may weaken with continued climate change. These results highlight the
 value of studying both abiotic factors and biotic interactions to
 understand how climate change will influence plant populations.
description: Data were collected on plants in the field, using (1)
 supplemental hand-pollinations and subsequent recording of seed production
 and seed predation,  (2) counts of pollen grains on stigmas, and (3)
 observations of eggs oviposited by seed predators.
description: ReadMe files are provided separately for: (1) pollen limitation
 files (Campbell_JEcology_pollenlim19871990,
 Campbell_JEcology_pollenlim19952002, Campbell_JEcology_pollenlim20032007),
 (2) pollen loads on stigmas (Campbell_JEcology_pollenloads), and (3) eggs
 of flies on flowers (Campbell_JEcology_eggs). A summary by year and site
 is in Campbell_JEcology_summarybyyearsite. Missing data is indicated by
 "."
DOI: 10.7272/q61g0jhj
title: Cannabis industry businesses, organizations, and individuals that lobby in Colorado

description: This dataset contains information about the cannabis industry businesses,
 organizations, and individuals that lobby in Colorado. Its primary purpose
 is to serve as a repository of names, affiliations, and connections which
 can assist other researchers in identifying members of the cannabis
 industry or those representing cannabis industry interests in other areas.
description: This data was collected between February and September of 2021
 using a snowball search of publicly available government databases, public
 news media articles, and public business websites. Lobbying expenditure
 and income totals represent spending between July 1, 2009 and June 30,
 2021 and are adjusted for inflation into June 2021 dollars using consumer
 price index data from the U.S. Bureau of Labor and Statistics. Additional
 client information was gathered from the Colorado Department of
 State's (CDOS) website, public business webpages, and internet
 searches. Bill information was gathered from the Colorado state General
 Assembly's website and combined with data from the CDOS lobbying
 database.
DOI: 10.5281/zenodo.18399741
title: Data from: A data-driven approach for optimization design of elevated subway station constrained by transient thermal comfort
DOI: 10.5281/zenodo.18399742
title: Data from: A data-driven approach for optimization design of elevated subway station constrained by transient thermal comfort
DOI: 10.5061/dryad.2bvq83bs4
title: Data from: Mridha S and Kümmerli R (2022) Enforced specialization fosters mutual cheating and not division of labour in the bacterium Pseudomonas aeruginosa

description: A common way for bacteria to cooperate is via the secretion of beneficial
 public goods (proteases, siderophores, biosurfactants) that can be shared
 among individuals in a group. Bacteria often simultaneously deploy
 multiple public goods with complementary functions. This raises
 the question whether natural selection could favour division of labour
 where subpopulations or species specialise in the production of a single
 public good, whilst sharing the complementary goods at the group level.
 Here we use an experimental system, where we mix engineered specialists of
 the bacterium Pseudomonas aeruginosa that can each only
 produce one of the two siderophores, pyochelin or pyoverdine, and explore
 the conditions under which specialization can lead to division of labour.
 When growing pyochelin and pyoverdine specialists at different mixing
 ratios under different levels of iron limitation, we found that
 specialists could only successfully complement each other in environments
 with moderate iron limitation and grow as good as the generalist wildtype
 but not better. Under more stringent iron limitation, the dynamics in
 specialist communities was characterized by mutual cheating and
 with higher proportions of pyochelin producers greatly compromising group
 productivity. Nonetheless, specialist communities remained stable through
 negative frequency-dependent selection. Our work shows that specialization
 in a bacterial community can be spurred by cheating and does not
 necessarily result in beneficial division of labour. We propose that
 natural selection might favour fine-tuned regulatory mechanisms in
 generalists over division of labour because the former enables generalists
 to remain flexible and adequately adjust public good investments in
 fluctuating environments.