cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2lcpsg
title: CCDC 2394526: Experimental Crystal Structure Determination

description: Related Article: Ajal P. Shaji, Nachiketh Sudarshan, Burkhard König, Purushothaman Gopinath|2025|J.Org.Chem.|90|5550|doi:10.1021/acs.joc.5c00234
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.4dtpsk
title: Occurrence Download

description: A dataset containing 16266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Geitonoplesium A.Cunn. ex R.Br."
 ]
}

 The dataset includes 16266 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001264-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/bwuios
title: ShIOEnv_40cmd_7x10K

description: Datasets of Linux command inputs and their observed execution behaviors collected from the ShIOEnv environment for 40 utilities. Each dataset is curated using different methods of argument construction from a defined context-free grammar (CFG):

&lt;ul&gt;
&lt;li&gt; &lt;b&gt; unconstrained random truncated (UCRT) &lt;/b&gt;: randomly select productions from the full set of productions, truncated randomly to reduce argument redundancy. &lt;/li&gt;
&lt;li&gt; &lt;b&gt; unconstrained policy network (UCPN-m0) &lt;/b&gt;: policy network updated using proximal policy optimization over 20,000 episodes with a redundancy score margin of 0, selecting from the full set of productions. &lt;/li&gt;
&lt;li&gt; &lt;b&gt; unconstrained policy network (UCPN-m50) &lt;/b&gt;: policy network updated using proximal policy optimization over 20,000 episodes with a redundancy score margin of 0.50, selecting from the full set of productions. &lt;/li&gt;
&lt;li&gt; &lt;b&gt; grammar-constrained random truncated (GCRT) &lt;/b&gt;: randomly select productions from valid expansions, truncated randomly to reduce argument redundancy. &lt;/li&gt;
&lt;li&gt; &lt;b&gt; grammar-constrained policy network (GCPN-m0) &lt;/b&gt;: policy network updated using proximal policy optimization over 20,000 episodes with a redundancy score margin of 0, selecting from valid expansions. &lt;/li&gt;
&lt;li&gt; &lt;b&gt; grammar-constrained policy network (GCPN-m50) &lt;/b&gt;: policy network updated using proximal policy optimization over 20,000 episodes with a redundancy score margin of 0.50, selecting from valid expansions. &lt;/li&gt;
&lt;li&gt; &lt;b&gt; NL2Bash &lt;/b&gt;: Bootstrapped NL2Bash dataset adapted to be executable in the default container provided in ShIOEnv. &lt;/li&gt;
&lt;/ul&gt;

Refer to dataset_dist_&lt;tag&gt;.png for distributions of each field in each dataset.

The generating environment and agent are available on GitHub: https://github.com/synlab-jragsdale/ShIOEnv/tree/main
DOI: 10.15468/dl.xh5tr2
title: Occurrence Download

description: A dataset containing 302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lontra felina (Molina, 1782)"
 ]
}

 The dataset includes 302 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001265-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zzs7at
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (South Africa, Lesotho)",
 "DatasetKey is one of (Museum of Comparative Zoology, Harvard University, IZIKO South Africa Museum Collection (1800-2013), iNaturalist Research-grade Observations, Ohio State Acarology Laboratory (OSAL), Ohio State University, LACM Entomology Collection)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Boophilus decoloratus Minning, 1934"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001266-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmx89u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Craugastor megacephalus)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081118-250717081556266/datasets/export for details.
DOI: 10.15468/dl.dafuz3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Craugastor megacephalus)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081117-250717081556266/datasets/export for details.
DOI: 10.15468/dl.kxmxgn
title: Occurrence Download

description: A dataset containing 20929 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bubulcus ibis",
 "Year 2020-2025"
 ]
}

 The dataset includes 20929 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027232-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nsdsjs
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lissachatina fulica",
 "Year 2024-2025"
 ]
}

 The dataset includes 289 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027235-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tf73sq
title: Occurrence Download

description: A dataset containing 9084 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Schistes albogularis)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 9084 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027234-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16749354
title: Data for TI-transmon paper

description: Data and analysis notebooks for measurements presented in arXiv:2506.18232.
DOI: 10.5281/zenodo.16749353
title: Data for TI-transmon paper

description: Data and analysis notebooks for measurements presented in arXiv:2506.18232.
DOI: 10.15468/dl.x77gwv
title: Occurrence Download

description: A dataset containing 2915 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Schistes geoffroyi)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 2915 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027237-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzrdb5
title: Occurrence Download

description: A dataset containing 386 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei, Hong Kong, Macao)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is EN",
 "OccurrenceStatus is Present",
 "TaxonKey is Anguilla japonica"
 ]
}

 The dataset includes 386 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027236-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.536t7v
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lycodontis laysanus"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027238-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xygdb9
title: Occurrence Download

description: A dataset containing 9501052 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Larus saundersi, Macronyx fuelleborni, Psittacula columboides, Chrysococcyx osculans, Parula pitiayumi, Parus gambeli, Coracina melas, Cissa thalassina, Turdoides gularis, Eudyptes sclateri, Phalacrocorax colensoi, Pernis ptilorhyncus, Chrysococcyx meyeri, Nectarinia chalcomelas, Zoothera pinicola, Macronous striaticeps, Francolinus griseostriatus, Tadorna radjah, Copsychus cebuensis, Melidectes princeps, Schistocichla schistacea, Coracina schisticeps, Oenanthe lugentoides, Haematopus ater, Pinaroloxias inornata, Lonchura cantans, Dryocopus schulzii, Calyptocichla serinus, Hemispingus reyi, Nectarinia comorensis, Synthliboramphus hypoleucus, Certhilauda erythrochlamys, Phalacrocorax auritus, Ortygospiza locustella, Serinus ankoberensis, Bradornis pallidus, Serinus mozambicus, Philesturnus carunculatus, Meliphaga gracilis, Thripias pyrrhogaster, Loxops caeruleirostris, Melophus lathami, Thripias xantholophus, Pomatorhinus gravivox, Puffinus tenuirostris, Rallina leucospila, Prinia leucopogon, Monarcha browni, Anas discors, Parus xanthogenys)",
 "HasCoordinate is true",
 {
 "not" : {
 "Issue" : [
 "is one of (Coordinate invalid, Coordinate out of range, Zero coordinate, Country coordinate mismatch, Taxon match fuzzy, Taxon match higher rank, Coordinate uncertainty meters invalid, Coordinate precision invalid, Recorded date invalid, Recorded date mismatch, Footprint WKT mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 9501052 records from 507 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027198-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4n3sm7
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lates stappersii)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027239-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfwt3q
title: Occurrence Download

description: A dataset containing 16705 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Schistochlamys melanopis)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 16705 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027240-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tq7jry
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anguilla bicolor"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027241-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.65z2za
title: Occurrence Download

description: A dataset containing 9812 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Schistochlamys ruficapillus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 9812 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027242-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.28904
title: Dataset on Soil Enzyme Activities, Physicochemical Properties, and Microbial Community Composition in Winter Wheat Fields of Lankeshan, Xin'an County, Luoyang (2023-2024)
title: Dataset on Soil Enzyme Activities, Physicochemical Properties, and Microbial Community Composition in Winter Wheat Fields of Lankeshan, Xin'an County, Luoyang (2023-2024)

description: This dataset captures multi-dimensional soil health indicators across four critical growth stages (jointing-JS, flowering-FS, grain filling-GP, ripening-RP) of winter wheat under five fertilization regimes. It integrates:Soil enzyme activities: Urease (UE), catalase (CAT), sucrase (SC), and neutral phosphatase (NP) (measured via Solarbio kits with Thermo Fisher Multiskan SkyHigh).Physicochemical properties: Total nitrogen (TN), available phosphorus (AP), available potassium (AK), soil organic matter (SOM), ammonium nitrogen (AN), and pH.Microbial community composition: Relative abundances of bacterial phyla (e.g., Actinomycetota, Pseudomonadota) and fungal phyla (e.g., Ascomycota, Basidiomycota) (Illumina NovaSeq by Majorbio, Shanghai).Depth-stratified: 0-10 cm and 10-20 cm layers via auger with five-point sampling.Temporal resolution: Triplicates per treatment at each growth stage.
description: This dataset captures multi-dimensional soil health indicators across four critical growth stages (jointing-JS, flowering-FS, grain filling-GP, ripening-RP) of winter wheat under five fertilization regimes. It integrates:Soil enzyme activities: Urease (UE), catalase (CAT), sucrase (SC), and neutral phosphatase (NP) (measured via Solarbio kits with Thermo Fisher Multiskan SkyHigh).Physicochemical properties: Total nitrogen (TN), available phosphorus (AP), available potassium (AK), soil organic matter (SOM), ammonium nitrogen (AN), and pH.Microbial community composition: Relative abundances of bacterial phyla (e.g., Actinomycetota, Pseudomonadota) and fungal phyla (e.g., Ascomycota, Basidiomycota) (Illumina NovaSeq by Majorbio, Shanghai).Depth-stratified: 0-10 cm and 10-20 cm layers via auger with five-point sampling.Temporal resolution: Triplicates per treatment at each growth stage.
DOI: 10.57760/sciencedb.28902
title: Molecular Hydrophobicity in Early Stage Developability Assessments
title: Molecular Hydrophobicity in Early Stage Developability Assessments

description: This dataset provides a comprehensive characterization of 43 IgG1KO antibodies, detailing their variable light and heavy chain sequences. Key parameters measured include the calculated isoelectric point (pI), the percentage of the main peak in analytical size-exclusion chromatography (aSEC % Main), and profiles from analytical hydrophobic interaction chromatography—specifically retention time, % Main, and peak width. Additionally, the dataset includes results from a hydrophobicity slurry assay using butyl-derivatized resin across varying concentrations of ammonium sulfate (340 mM, 515 mM, and 770 mM). Normalized data values are provided, along with calculated recovery percentages based on the formula: (% Recovery = Slurry Recovery / (Normalized Concentration × 0.57)). These data offer valuable insights into the development and optimization of the hydrophobicity slurry assay.
description: This dataset provides a comprehensive characterization of 43 IgG1KO antibodies, detailing their variable light and heavy chain sequences. Key parameters measured include the calculated isoelectric point (pI), the percentage of the main peak in analytical size-exclusion chromatography (aSEC % Main), and profiles from analytical hydrophobic interaction chromatography—specifically retention time, % Main, and peak width. Additionally, the dataset includes results from a hydrophobicity slurry assay using butyl-derivatized resin across varying concentrations of ammonium sulfate (340 mM, 515 mM, and 770 mM). Normalized data values are provided, along with calculated recovery percentages based on the formula: (% Recovery = Slurry Recovery / (Normalized Concentration × 0.57)). These data offer valuable insights into the development and optimization of the hydrophobicity slurry assay.
DOI: 10.15468/dl.hp6jmy
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gymnothorax gilberti"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027243-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.26650
title: PubMed knowledge graph 2.0: Connecting papers, patents, and clinical trials in biomedical science
title: PubMed knowledge graph 2.0: Connecting papers, patents, and clinical trials in biomedical science

description: Papers, patents, and clinical trials are indispensable types of scientific literature in biomedicine, crucial for knowledge sharing and dissemination. However, these documents are often stored in disparate databases with varying management standards and data formats, making it challenging to form systematic, fine-grained connections among them. To address this issue, we introduce PKG 2.0, a comprehensive knowledge graph dataset encompassing over 36 million papers, 1.3 million patents, and 0.48 million clinical trials in the biomedical field. PKG 2.0 integrates these previously dispersed resources through various links, including biomedical entities, author networks, citation relationships, and research projects.For more details, please refer to our paper or dataset homepage:Paper: Xu, J., Yu, C., Xu, J. et al. PubMed knowledge graph 2.0: Connecting papers, patents, and clinical trials in biomedical science. Sci Data ​​12​​, 1018 (2025). https://doi.org/10.1038/s41597-025-05343-8Homepage: https://pubmedkg.github.io/Updates:[Jul 20, 2025] The PKG dataset has been updated to PKG24S4 based on the PubMed 2025 Baseline. Meanwhile, data from other sources integrated in the dataset have also been updated correspondingly to ensure the timeliness and consistency of the overall data.
description: Papers, patents, and clinical trials are indispensable types of scientific literature in biomedicine, crucial for knowledge sharing and dissemination. However, these documents are often stored in disparate databases with varying management standards and data formats, making it challenging to form systematic, fine-grained connections among them. To address this issue, we introduce PKG 2.0, a comprehensive knowledge graph dataset encompassing over 36 million papers, 1.3 million patents, and 0.48 million clinical trials in the biomedical field. PKG 2.0 integrates these previously dispersed resources through various links, including biomedical entities, author networks, citation relationships, and research projects.For more details, please refer to our paper or dataset homepage:Paper: Xu, J., Yu, C., Xu, J. et al. PubMed knowledge graph 2.0: Connecting papers, patents, and clinical trials in biomedical science. Sci Data ​​12​​, 1018 (2025). https://doi.org/10.1038/s41597-025-05343-8Homepage: https://pubmedkg.github.io/Updates:[Jul 20, 2025] The PKG dataset has been updated to PKG24S4 based on the PubMed 2025 Baseline. Meanwhile, data from other sources integrated in the dataset have also been updated correspondingly to ensure the timeliness and consistency of the overall data.
DOI: 10.15468/dl.ecvkbb
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Asia",
 "Country is Philippines",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anas luzonica"
 ]
}

 The dataset includes 87 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027244-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.