cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3625595_d1
title: Additional file 8: of Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

description: Variants from NL1I reads on the BCMVS2 genome assembly. Variant-call-format file, showing single-nucleotide variants between the NL1I genomic reads and the BCMVS2 genome assembly. (ZIP 12Â kb)
DOI: 10.6084/m9.figshare.c.3625577_d6
title: Additional file 5 of iRDA: a new filter towards predictive, stable, and enriched candidate genes

description: Table S5. Candidate genes. The file provides all the candidate genes selected by four filters over eleven datasets to be evaluated in Figs. 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22 and 23. (XLSX 36 kb)
DOI: 10.17863/cam.95738
title: Research data supporting "Parameterization and modeling protocols for ultra-fast charging Wadsley-Roth lithium-ion batteries from coin to pouch cells"

description: First zip folder contains raw battery cell data in .txt format, embodying a full study of the electrochemistry of the Wadsley-Roth structure (with Nb2O5 as its simplest composition) in different cell formats. The filename refers to the type of cell and type of test.$$ \ $$ Full low-rate electrochemical parameterization data is collected in half cells versus lithium with EIS combined with Galvanostatic Intermittent Titration Technique (GITT), reference cycles (ref), discharge rate tests (dischargerate) and voltage sweeps (VS). Full high-rate electrochemical parameterization data is acquired in 3-electrode cells versus NCA (LiNi0.8Co0.15Al0.05O2) with lithium as reference electrode with alternating pulses with increasing current (sGITT) after formation (form).$$ \ $$ Based on this, pulse (sGITT) and rate performance (chargerate and dischargerate) is modelled (model) in full coin cells (fullcell) and pouch cells (pouchcell) versus NCA. Validation (validation) is carried out with rate (chargerate and dischargerate) experiments in full coin cells and pouch cells from 0.1C to 20C. $$ \ $$ All files have time, current, voltage and capacity data and are linked to the cell parameters including electrode areal mass loading, porosity and thickness as reported in the associated publication. The publication also contains more information regarding the parameterization and modelling method used to acquire the data. $$ \ $$ Second zip folder contains the cell testing program settings that were used to generate this data in .txt format. This format can also be openened with Biologic BT-lab or EC-lab cell cyling software directly. The first half of the filename refers to the type of test (linking to the data above). The second half contains extra information on specific settings. "A" and "T" mean test for anode half cell and three electrode cell respectively. "C" and "D" indicate if the test is testing (fast) charge or discharge capability respectively. "P" indicates if a predelithiation step is added before the rest of the test is started. "R" indicates that the data is collected at high resolution. "E" indicates whether the test is combined with PEIS tests. "####V" indicates the voltage window. '##C' indicates the maximum C-rate used in the test.
DOI: 10.6084/m9.figshare.c.3625577_d7
title: Additional file 4 of iRDA: a new filter towards predictive, stable, and enriched candidate genes

description: Table S4. Parsimonious gene sets of MCC performance. The file provides all the gene sets of four filters over eleven datasets based on MCC measurement from Tables 5 and 7. (XLSX 19 kb)
DOI: 10.17863/cam.35707
title: Variant calls associated with "Parallel adaptation of rabbit populations to myxoma virus"

description: Compressed archive containing three files associated with the manuscript "Parallel adaptation of rabbit populations to myxoma virus". File 1 (rabbit_dataset.vcf) is a VCF file containing genotype calls inferred from the exome-sequencing of 152 European rabbit samples of modern and historical populations from Australia, France and the United Kingdom, collected between 1856 and 2013. Samples were collected to investigate adaptation to myxoma virus in rabbits by comparing pre and post-myxomatosis populations. Each sample name is composed by a code of four strings of abbreviations connected by an underscore (e.g. M_AU_NSW_bh1). The first string states the sample type (M for modern and H for historical), the second refers to the country of origin (AU for Australia, FR for France and UK for the United Kingdom), the third refers to the state (Australia), department (France) or county (United Kingdom), and the fourth string represents the sample location (e.g. city, village) followed by the sample number (to distinguish samples collected in the same location). The VCF was generated using GATK, version 3.5 only for all samples with a minimum coverage of 5x. Details concerning samples, sequencing, bioinformatic pipeline pre-genotype calling and variant/genotype filters are available in the supplementary material of the manuscript and in the header of the VCF file. File 2 (rabbit_dataset.vcf.idx) is the VCF index file. File 3 (rabbit_dataset_allelecount.txt) is an allele count of all SNPs for each historical and modern population inferred from the VCF file. All the variant calls that are described in detail in: Alves et al 2019 Parallel adaptation of rabbit populations to myxoma virus. Science.
DOI: 10.17863/cam.11831
title: Research Data supporting "Adolescent friendships predict later resilient functioning across psychosocial domains in a healthy community cohort'

description: Please refer to READ ME file
DOI: 10.17863/cam.107626
title: Research data supporting "Angle-resolved optical spectroscopy of photonic cellulose nanocrystal films reveals the influence of additives on the mechanism of kinetic arrest"

description: Supporting data for the article "Angle-resolved optical spectroscopy of photonic cellulose nanocrystal films reveals the influence of additives on the mechanism of kinetic arrest", published in Soft Matter (2024). The data is provided within a structured set of folders compressed in zip, each correlating to a specific figure in the article and supplementary information.
DOI: 10.17863/cam.50622
title: Research data supporting 'Extent of N-terminus exposure of monomeric alpha-synuclein determines its aggregation propensity'

description: Raw data files supporting the manuscript 'Extent of N-terminus exposure of monomeric alpha-synuclein determines its aggregation propensity'. Including raw HDX-MS data for up to 6 replicates for two labelling conditions (with and without Ca2+) and MS/MS mapping files. Raw nano-ESI-EM and nano-ESI-IM-MS data of three replicates with and without Ca2+. Raw NMR data files for three aSyn varients with and without Ca2+. Raw ThT-based aggregation kinetic data. Additional AFM files. Primer sequences.
DOI: 10.17863/cam.22617
title: Field observations of settlements during circular shaft excavation in London

description: Field observations of ground surface settlement during circular shaft construction in London
DOI: 10.6084/m9.figshare.c.3625595_d10
title: Additional file 13: of Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

description: Significant alternate-splice transcripts for NL1-I at 4Â days after infection. (ZIP 3Â kb)
DOI: 10.6084/m9.figshare.c.3625619_d5
title: Additional file 10: of Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development

description: Differentially expressed lncRNA loci in pairwise comparisons. (XLSX 2178 kb)
DOI: 10.6084/m9.figshare.c.3625619_d6
title: Additional file 13: of Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development

description: Negative correlation between lncRNA expression and all PC genes. (XLSX 2974 kb)
DOI: 10.17863/cam.64736
title: Supplementary material supporting On the dynamics of stratified particle-laden plumes

description: The spreadsheet contains four separate sheets with a variety of data associated with the paper. The sheet labelled ‘Experimental conditions‘ details the plume source conditions, the strength of the ambient stratification and the particles used. ‘Consequential values’ presents a number of calculated parameters important to understanding plume dynamics including the values of the entrainment coefficient and the virtual source. ‘Measurements’ include experimental values determined either from image analysis or direct sampling; and ‘Time dependent values (Fig 8b)’ provides the raw data to produce Figure 8b.
DOI: 10.6084/m9.figshare.c.3625595_d11
title: Additional file 7: of Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

description: Variants from BCMVS2 reads on the NL1I genome assembly. Variant-call-format file, showing single-nucleotide variants between the BCMVS2 genomic reads and the NL1I genome assembly. (ZIP 13Â kb)
DOI: 10.6084/m9.figshare.c.3625619_d7
title: Additional file 3: of Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development

description: The sequences of 5,884 lncRNAs in the .fasta format. (FASTA 5602 kb)
DOI: 10.6084/m9.figshare.c.3625619_d8
title: Additional file 11: of Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development

description: Primers used in qRT-PCR for validation of ten random lncRNAs. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3625619_d9
title: Additional file 12: of Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development

description: Expression correlations between lncRNAs and adjacent PC genes. (XLSX 894 kb)
DOI: 10.6084/m9.figshare.c.3625619_d10
title: Additional file 15: of Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development

description: LncRNAs in Prunus. (FASTA 1011 kb)
DOI: 10.17863/cam.12354
title: Research data supporting 'Quantum Tricritical Points in NbFe2'

description: Magnetisation, magnetic susceptibility and electrical resistivity data obtained on single crystals of NbFe2 with varying levels of Fe or Nb excess. Analysis in terms of Arrott plots. Resulting phase diagram showing buried ferromagnetic quantum critical point and quantum tricritical points.
DOI: 10.17863/cam.62752
title: Research data supporting "Using pulsed mode scanning electron microscopy for cathodoluminescence studies on hybrid perovskite films"

description: The original data files of the CL maps are found in the data folder. Each map can be opened using Hyperspy in Python. The TRCL files are found in the data folder, inside the TRCL folder. It can be opened using Origin Pro. In that same folder, the time evolution of the CL spectrum is also found. In the si folder (inside the data folder), there are some spreadsheets for the metadata of each scan and the CASINO simulation. In the scripts folder, there is a list of Jupyter Notebooks which show all the processing of the CL maps, as well as the fitting and the plotting methods.
DOI: 10.17863/cam.95331
title: Research Data Supporting "Evaluating Wagner Oxidation Criteria for Protective Al2O3 Scale Formation in Ni-based Superalloys"

description: The figures and modelling data described in the manuscript are enclosed in this dataset. Data are provided for the experimental alloy (Alloy X) and characterised with Wagner’s oxidation criteria in metals (.xlsx file). Wagnerian analyses for commercial alloys are also included. In addition, scanning electron micrographs (.tif files) obtained for Alloy X are provided. Energy dispersive X-ray spectroscopy data are also included (.oip file) with the relevant data files (.dat) and can be opened using the proprietary Oxford Instruments AZtec software. Also included are the raw data for the thermo-gravimetric analysis and the surface areas of Alloy X used to calculate normalised mass gain data (.xlsx file).
DOI: 10.17863/cam.23250
title: Supporting data for: Accumulation and subduction of buoyant material at submesoscale fronts

description: This directory contains the source code and input files required to recreate the simulations reported in Taylor, JPO, 2018. The directories are as follows: for: Fortran source code R0: input and grid files for case with M^2=3e-8, B0=0 R0p1: input and grid files for case with M^2=3e-8, B0=-1.9e-10 R1: input and grid files for case with M^2=3e-8, B0=-1.9e-9 R10: input and grid files for case with M^2=3e-8, B0=-1.9e-8 R0p1_nofront: input and grid files for case with M^2=0, B0=-1.9e-10 R1_nofront: input and grid files for case with M^2=0, B0=-1.9e-9 R10_nofront: input and grid files for case with M^2=0, B0=-1.9e-8
DOI: 10.17863/cam.100572
title: Research data supporting 'Bumblebees negotiate a tradeoff between nectar quality and floral biomechanics'

description: Research data supporting 'Bumblebees negotiate a trade-off between nectar quality and floral biomechanics'. TradeOffData.csv: CSV file with timing data from bee observations. During the experiments, a simple custom computer program was used to record the orientation of flowers which the bee visited and drank sucrose solution from, as well as the time spent visiting, drinking, flying between flowers, or resting. Recordings were triggered in real-time using keyboard shortcuts. This wrapped SQL statements to different keystrokes, with a different keystroke for each behavioural activity. Alongside each observation/behaviour a timestamp in milliseconds was recorded, giving a sequence of such behavioural observations for each bee. The data file records observation ID (a unique sequential number), the colony from which the bees originated (1-3), bee ID, sucrose difference treatment (control, high difference or low difference), foraging surface (coarse-rough or micro-rough), a randomly allocated flower ID for each visit, the observation, the time in milliseconds spent performing the activity, the bout number of the trip, and the drink number for each bee. BeeMasses.csv contains colony ID, bee ID and mass of bee in mg.
DOI: 10.17863/cam.63032
title: Research data supporting Melt-Quenched Glasses from Hybrid Organic-Inorganic Perovskites

description: This data set contains all of the data presented in the paper ", B. K. Shaw et. al, Nature Chem, Accepted”. Several hybrid materials from the metal-organic framework (MOF) family have been demonstrated to form stable high temperature liquids. Quenching then results in the formation of melt-quenched MOF-glasses, which retain the inorganic-organic bonding of the three-dimensional crystalline phase. The properties of this new class of ‘hybrid’ glass are of intense interest in both coordination polymer and glass domains. The phenomenon is however still limited to several structures. Hybrid perovskites occupy a prominent position within solid-state materials chemistry due to their functional properties such as ionic transport, photoconductivity, ferroelectricity and multiferroicity. Here we show that a series of dicyanamide-based hybrid organic-inorganic perovskites melt. Our combined experimental-computational approach demonstrates that they form glasses upon quenching, which largely retain inorganic-organic connectivity. Their very low thermal conductivities (~ 0.2 W m-1 K-1), combined with moderate electrical conductivities (10-3 – 10-5 S m-1) and polymer-like thermo-mechanical properties identify them as a new family of functional glass-formers. The README file in the main directory contains a list of each sub-folder, and the data it contains. These are correlated to the figure numbers in both main manuscript and SI, which present this data.
DOI: 10.6084/m9.figshare.c.3625679_d1
title: Additional file 1: of Thromboelastometry versus free-oscillation rheometry and enoxaparin versus tinzaparin: an in-vitro study comparing two viscoelastic haemostatic testsâ   dose-responses to two low molecular weight heparins at the time of withdrawing epidural catheters from ten patients after major surgery

description: Raw data of our results. (TXT 3 kb)
DOI: 10.6084/m9.figshare.c.3625595_d19
title: Additional file 6: of Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

description: Variants from BCMVS2 reads on the BCMVS2 genome assembly. Variant-call-format file, showing single-nucleotide variants within the BCMVS2 genome. (ZIP 3Â kb)
DOI: 10.6084/m9.figshare.c.3625676_d4
title: Additional file 6: Table S5. of Genome-wide identification of microRNAs in pomegranate (Punica granatum L.) by high-throughput sequencing

description: miRNA nucleotide bias at each position of 24-nt small RNAs. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3625676_d5
title: Additional file 3: Table S2. of Genome-wide identification of microRNAs in pomegranate (Punica granatum L.) by high-throughput sequencing

description: Total counts of variants of known miRNAs. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3625595_d21
title: Additional file 14: of Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

description: Significant alternate-splice transcripts for BCMV-S2 at 4Â days after infection. (ZIP 4Â kb)
DOI: 10.6084/m9.figshare.c.3625676_d6
title: Additional file 4: Table S3. of Genome-wide identification of microRNAs in pomegranate (Punica granatum L.) by high-throughput sequencing

description: List of novel miRNAs, their precursors with hairpin structure sequences. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3625700_d1
title: Additional file 1: File S1. of Gender differences in murine pulmonary responses elicited by cellulose nanocrystals

description: Differentially expressed mRNA profiles upon pharyngeal aspiration exposure to CNC. The differentially up and down-regulated mRNAs in the lungs of male and female mice 3Â months after repeated pharyngeal aspiration with CNC (cumulative dose of 240Â Îźg/mouse). (XLSX 140 kb)
DOI: 10.6084/m9.figshare.c.3625676_d7
title: Additional file 7: Table S6. of Genome-wide identification of microRNAs in pomegranate (Punica granatum L.) by high-throughput sequencing

description: List of target candidates of novel miRNAs. (XLSX 112Â kb)
DOI: 10.6084/m9.figshare.c.3625595_d23
title: Additional file 11: of Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

description: Alternate splice events from the bean genome assembly. (ZIP 82Â kb)
DOI: 10.17863/cam.26410
title: Research data supporting "Indole Pulse Signalling Regulates the Cytoplasmic pH of E. coli in a Memory-Like Manner"

description: This dataset was collected by Fluorescence Spectroscopy and FlowCytometry
DOI: 10.6084/m9.figshare.c.3625700_d2
title: Additional file 4: Table S2. of Gender differences in murine pulmonary responses elicited by cellulose nanocrystals

description: KEGG pathway enrichment analysis of up and down-regulated genes in the lungs of male and female mice exposed to CNC. (XLSX 14 kb)
DOI: 10.17863/cam.39569
title: Supporting data for: Stratification effects in the turbulent boundary layer beneath a melting ice shelf: insights from resolved large-eddy simulations

description: This directory contains the source code and input files to reproduce the results shown in the paper.
DOI: 10.17863/cam.106510
title: I-CeM Lookup Table - Relationship to Household Head code

description: This spreadsheet is designed to be used in conjunction with the Integrated Census Microdata (I-CeM) collection of historic census data covering the period 1851 to 1921. For further details of the I-CeM data collection, please visit the comprehensive project website at: https://www.campop.geog.cam.ac.uk/research/projects/icem/ Outline information on the I-CeM project are also provided on the README page of this spreadsheet. This file relates specifically to the I-CeM data collection variable RELA.
DOI: 10.17863/cam.66855
title: Research data supporting "Minimising embodied carbon in reinforced concrete beams"

description: This dataset contains the programme scripts and spreadsheets associated with the above journal article. This data has been generated during the PhD studies by Amila Jayasinghe. The methodology, flow charts and descriptions of the logic have been explained in detail in the paper. See README.txt for a detailed description of the dataset.
DOI: 10.17863/cam.81229
title: Dataset for: Evaluation of label-free confocal Raman micro-spectroscopy for monitoring oxidative stress in vitro in live human cancer cells

description: The data set consists of a series of Raman spectroscopy experiments conducted on live A549 cells under antioxidant and pro-oxidant conditions. In addition, reference fluorescence microscopy images are included, along with processed image and spectral data. The methods associated with the data acquisition and processing are detailed in the associated manuscript published in Antioxidants.
DOI: 10.6084/m9.figshare.c.3625718_d4
title: MOESM1 of Modeling human enteric dysbiosis and rotavirus immunity in gnotobiotic pigs

description: Additional file 1: Table S1. Experimental design for Gn pig study. Table S2.Â Mean concentration of specified enteropathy biomarkers in large intestinal contents on PID28 and PCD7. Table S3. Mean measurements per group for specified parameter and tissue. V:C is the villous to crypt ratio. Mitotic index was determined by counting mitotic figures in 50 crypts. Measurements are given in mm. Table S4. Weights (in kg) of Gn pigs during the study.
DOI: 10.6084/m9.figshare.c.3625721_d4
title: Additional file 4: Text S2. of Diversity and distribution of alpha satellite DNA in the genome of an Old World monkey: Cercopithecus solatus

description: Alignment used to generate the phylogenetic tree from Fig. 7b. (TXT 48 kb)
DOI: 10.17863/cam.51661
title: Research data supporting "Plant-Inspired Polyaleuritate–Nanocellulose Composite Photonic Films"

description: Plant epidermis is a complex composite material composed of the cuticle and epidermal cells. In order to prevent dehydration, the cuticle, a water barrier composed of an outer layer (proper cuticle) connected to the cell wall of the epidermal cells via a complex matrix often referred to as cutinized cell wall, acts as a compatibilizer for water-repellent cutin and the hydrophilic polysaccharides in the cell walls. Here, biomimetic plant epidermis-inspired films with selective reflection properties were prepared by the formation of an aliphatic polyester coating on chiral nematic cellulose nanocrystal (CNC) films. Aleuritic acid, a polyhydroxylated fatty acid, was sprayed on CNC films and polymerized by hot-pressing. The micromorphology of the resultant samples was characterized by scanning electron microscopy. Polarized optical microscopy confirmed the CNC helicoidal organization in the films, responsible for the reflection of circularly polarized light, before and after hot-pressing. The chemical analysis by attenuated total reflection-Fourier transform infrared spectroscopy confirmed the polymerization of aleuritic acid into polyaleuritate with differences between filter paper and wood pulp substrates that were ascribed to water elimination during polycondensation. The characterization of the mechanical (Young’s modulus and hardness from nanoindentation tests) and hydrodynamic (water uptake and water vapor transmission rate) properties indicated that this process enhances the robustness and waterproof behavior of CNC films. These properties were comparable to those of commercial and biodegradable materials commonly used in packaging such as polyesters and cellulose derivatives, thus making these natural composites ideal for optically responsive packaging applications.