cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27088660.v1
title: Neuronal Differentiation of Human Glioma Cells Induced by Parthenolide

description: <b>Objective:</b> Previous drug repositioning studies have suggested that parthenolide may be a differentiation-inducing agent for glioma cells. This study aimed to experimentally verify the neuronal differentiation-inducing effects and proliferative impact of parthenolide on human glioma cells and explore its potential mechanisms. <b>Methods:</b> HE staining was used to observe the morphological changes in human glioma cell lines U87 and A172 induced by parthenolide. Immunocytochemistry was conducted to detect the expression of differentiation markers. The Ki-67 detection and CCK-8 assay were used to assess the effects of parthenolide on cell proliferation. The sphere formation assay was conducted to evaluate the self-renewal. GSCs derived from U87 cells were utilized to assess the ability of parthenolide to induce differentiation in GSCs. Western blot was used to detect the expression of HDAC1. Bioinformatics analysis based on the CGGA database was conducted to evaluate the role of HDAC1 in glioma. <b>Results:</b> Parthenolide (4μM) altered the morphology of U87 and A172 cells, as elongated cell projections were observed. Parthenolide induced glioma cells to express neuronal markers NeuN, MAP2, SYP, and NEFL, but not astrocyte or oligodendrocyte markers. Parthenolide significantly inhibited proliferation and self-renewal in glioma cell. Similar effects were observed in U87 GSCs. Furthermore, parthenolide downregulated HDAC1 expression in glioma cells, and the bioinformatics analysis revealed a potential relationship between neuronal characteristics and low expression of HDAC1 in glioma. <b>Conclusion:</b> Parthenolide induced neuronal differentiation and inhibited the cell proliferation in human glioma cells, which might be associated with the inhibition of HDAC1.
DOI: 10.6084/m9.figshare.13280375.v1
title: Dataset

description: This item contains 20 publicly available datasets taken from PROMISE repository.<br>
DOI: 10.6084/m9.figshare.14788881.v1
title: Scripts used for data analysis and visualization

description: Scripts and software output used in "Genome-wide association study reveals putative bacterial risk factors for cavitary Mycobacterium avium complex lung disease" by Hirokazu Yano, Yukiko Nishiuchi, Kentaro Arikawa, Atsushi Ota, Mari Miki, Fumito Maruyama, Hiroshi Kida, Seigo Kitada, Tomotada Iwamoto<br>
DOI: 10.6084/m9.figshare.28565825.v1
title: <b>EdTech in Science Education: A Path to Genuine Conceptual Understanding</b>

description: EdTech in Science Education: A Path to Genuine Conceptual Understanding
DOI: 10.6084/m9.figshare.12356336.v1
title: Data for for ”Factors explaining students’ attitudes towards learning in genetics and belief in genetic determinism”

description: Data for the manuscript ”Factors explaining students’ attitudes towards learning in genetics and belief in genetic determinism” which is posted in EdArXiv: https://doi.org/10.35542/osf.io/d5hzg.<br>Data is described in detail in the manuscript and short description in readme file is attached here.
DOI: 10.6084/m9.figshare.16578299.v1
title: codes

description: The "codes" directory contains example Matlab and Python scripts to load and analyze the data from each of the four modalities, i.e., WiFi CSI, PWR, UWB and Kinect. The user can replicate some of the figures in the Data Descriptor by running the following main script files: (1) plot_wificsi.m, (2) plot_uwb.m, (3) plot_uwb_fppow_crowdcount.m, (4) plot_PWR_demonstration.m, (5) plot_pwr_spectrogram.py, (6) plot_kinect_data.m. More information on the usage of each of the above scripts can be found within each script file as well as in the "Code availability" section of the Data Descriptor.
DOI: 10.6084/m9.figshare.6200807.v1
title: db_v20

description: MetaPhlAn2 db_v20
DOI: 10.6084/m9.figshare.20279286.v3
title: (1)The genome estimation, assemble statistics based on 41-K-mer, assemble statistics based on Illumina and Nanapore sequencing data, BUSCO assessment, GEGMA assessment, Illumina reads coverage, single nucleotide polymorphisms, Repetitive elements, gene function annotations, non-coding RNA prediction, gene families, gene expansion, and gene contraction of a natural diploid kiwifruit (Actinidia chinensis var. deliciosa) (2) Genone annotation file for a natural diploid kiwifruit (Actinidia chinensis var.deliciosa)

description: Table S1. Genome estimatiion for diploid Actinidia chinensis var. deliciosa; Table S2. Statistics of assembled genome sequences for diploid Actinidia chinensis var. deliciosa based on K-mer=41; Table S3. Statistics of genome of diploid Actinidia chinensis var. deliciosa based on Illumina and Nanapore sequencing data; Table S4. Report of BUSCO resuts for the diploid Actinidia chinensis var. deliciosa genome; Table S5. GEGMA assessment results of diploid Actinidia chinensis var. deliciosa genome; Table S6. Statistics of the Illumina reads coverage in diploid Actinidia chinensis var. deliciosa genome; Table S7. Statistics of the single nucleotide polymorphism of diploid Actinidia chinensis var. deliciosa genome; Table S8. Repetitive elements and their proportions in diploid Actinidia chinensis var. deliciosa genome; Table S9. Statistics of gene function annotations of Actinidia chinensis var. deliciosa genome; Table S10. Statistics of non-coding RNA prediciton for diploid Actinidia chinensis var. deliciosa genome; Table S11. Genes assigned to gene families in diploid Actinidia chinensis var. deliciosa genome; Table S12. Expanded gene familes in GO term; Table S13. Contracted gene families in GO term Genone annotation file for a natural diploid kiwifruit (Actinidia chinensis var.deliciosa)<br> <br> <br>
DOI: 10.6084/m9.figshare.21098470.v2
title: Chromosome-level genome assembly and population genomics of Mongolian racerunner (Eremias argus) provide insights into high-altitude adaptation in lizards

description: We report the first chromosome-level assembly of the Mongolian racerunner (<em>Eremias argus</em>) genome.
DOI: 10.6084/m9.figshare.22040780.v1
title: Glacial geomorphology of the northwest Laurentide Ice Sheet on the northern Interior Plains and western Canadian Shield, Canada

description: The majority of the Northwest Territories of mainland Canada was covered by the northwest sector of the Laurentide Ice Sheet during the Last Glacial Maximum. The increasing coverage of high resolution remotely sensed data, and in particular, digital elevation models provides new opportunities to map the glacial geomorphology and study the glacial history of this remote location. Here we present a comprehensive map of glacial landforms within the northern Interior Plains and adjacent areas of the Canadian Shield, east of the Mackenzie and Richardson mountains, between 60˚N and the Beaufort Sea/Amundsen Gulf, comprising around 6% of the Laurentide Ice Sheet bed. Twelve landform types were identified and mapped from the high resolution ArcticDEM: ice flow parallel lineations, subglacial ribs, crevasse-squeeze ridges, major and minor moraine crests, hummocky terrain complexes and ridges, shear margin moraines, major, minor and lateral and submarginal meltwater channels, esker ridges and complexes, glaciofluvial complexes, perched deltas, raised shorelines and aeolian dunes. Together, these landforms provide a record of the highly dynamic behaviour of the northwest sector of the Laurentide Ice Sheet.
DOI: 10.6084/m9.figshare.12174252.v1
title: Wang et al. example

description: Data corresponding to the Wang et al. examples; both the focused screen and the genome-scale CRISPR screen.
DOI: 10.6084/m9.figshare.28479041.v1
title: Genomic transcriptome and evolution of large-fungi YDJ

description: Genomic and gene structure annotation results
DOI: 10.6084/m9.figshare.23652639.v1
title: Direct electro-conversion of air to nitric acid under mild conditions

description: Source data of figures; DFT optmized structures of reaction intermediates and transition states.
DOI: 10.6084/m9.figshare.28596146.v1
title: Supplementary Material for: Feeding Dynamics In Very Preterm Infants With Delayed Oral Feeding Attainment

description: Introduction: We aimed to characterize features that can accurately identify preterm infants at risk of delay in oral feeding attainment.

Methods: A prospective observational study of infants born between 250/7 to 326/7 weeks’ gestation. Early independent oral feed attainment (EPO) was defined as independent oral feeding within 35 days of initiation and late attainment (LPO) defined at or after 35 days following initiation. Candidate characteristics of comparison included feeding interventions and reasons for feeding discontinuation. 

Results: Of the 257 infants included, 162 infants achieved EPO. Over the first week of oral feeding, LPO infants received fewer feeding interventions (e.g. side lying position, pacing, and re-alertment) and were fed less frequently (2 vs. 3 times per day; p&lt;0.001)

Conclusions: Compared to infants with EPO, infants with LPO differ in employed feeding strategies. These findings could guide resource allocation and facilitate the provision of individualized care.
DOI: 10.6084/m9.figshare.16880542.v1
title: serum biomarkers of colorectal cancer lung metastasis

description: Lung metastasis is a common site of metastasis that reduces the quality of life and survival rates of colorectal cancer patients. The identification of potential diagnostic biomarkers is of great significance to treating lung metastasis in colorectal cancer. In the present study, the metabonomic profiling of serum samples of lung metastasis mice was carried out by using 1H-nuclear magnetic resonance (1H-NMR). The changes in metabolic phenotypes during the progression of lung metastasis of colorectal cancer were noticeable, and some metabolites were identified.
DOI: 10.6084/m9.figshare.28467278.v1
title: Glucosinolate Profiling in <i>Arabidopsis thaliana</i> Using HPLC-DAD: Quantitative Analysis of Secondary Metabolites

description: The dataset includes quantitative measurements of glucosinolate content in <i>Arabidopsis thaliana</i> plant material. The glucosinolate profiles were obtained using High-Performance Liquid Chromatography with Diode-Array Detection (HPLC-DAD), ensuring precise identification and quantification of individual glucosinolates. The data provide insights into the composition and concentration of these secondary metabolites in the analyzed plant samples.
DOI: 10.6084/m9.figshare.7756688.v2
title: Data set - Axshya SAMVAD study - misclassification paper

description: This MS Excel file has two excel sheets, one containing data and the second sheet containing codebook. The data set is related to the Misclassification paper (misclassification of previously treated TB patients as new) from the Axshya SAMVAD study, India
DOI: 10.6084/m9.figshare.19499462.v1
title: patches and local annotations, slide 099, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.25574469.v1
title: Dataset of alpine soil P fractions, PCGs abundances, P cycling processes abundance, and soil properties under global warming

description: The warming-by-precipitation experiment was established in May 2015 at the Alpine Research Station (33°59’N, 102°00’E, ca. 3538 m above sea level) in the eastern Gannan Autonomous Prefecture, Gansu Province, China.A two-factor full factorial interaction manipulation experiment was designed with a randomized block design, including two levels of atmospheric temperature (ambient temperature [T<sup>0</sup>] and warming [T<sup>+</sup>]) and three levels of precipitation (ambient precipitation [nP], 30% precipitation reduction [-P], and 30% precipitation increase [+P]), totally resulting in six treatment combinations. Specifically, six treatments were conducted, including (1) T<sup>0</sup>-P, (2) T<sup>+</sup>-P, (3) T<sup>0</sup>nP, (4) T<sup>+</sup>nP, (5) T<sup>0</sup>+P, and (6) T<sup>+</sup>+P. Each treatment was replicated in four fields (four plots, each 4 m × 4 m). The plots within each block were separated by access paths that were 1.5 m wide, while the distance between adjacent blocks was 5 m.Other information was showed in README.file.
DOI: 10.6084/m9.figshare.3512543.v1
title: Appendix E. A correlation matrix with the three variables used in the principal-components analysis: relative humidity, soil moisture, and total understory cover.

description: A correlation matrix with the three variables used in the principal-components analysis: relative humidity, soil moisture, and total understory cover.
DOI: 10.6084/m9.figshare.9937967.v1
title: Supplementary Material for: Prevalence of Skin Disease in Urban Haiti: A Cross-Sectional Study

description: The prevalence of skin disease varies with geographic location and may be affected by cultural factors. In Haiti, the combination of poor health care access, infrastructure lack, and natural disasters may affect the prevalence of skin conditions. Unfortunately, little epidemiological information has been obtained on the prevalence of skin diseases in Haiti. The objective of this study is to describe data on the prevalence of dermatological conditions in urban areas of Haiti. Univariate, bivariate, and χ<sup>2</sup> analyses were used to evaluate associations. During February 2016, we documented 137 patients. The mean age was 27.7 years; most of the subjects were women (61.3%) in a cohort mostly adult (67.1%). The infectious and inflammatory dermatoses were the most prevalent (74.2%). Infectious skin diseases were more prevalent in men and in adults in general (<i>p</i> &lt; 0.01). Inflammatory conditions were also more common in adults (<i>p</i> &lt; 0.05). Additionally, alopecia and dyschromia were limited to women (<i>p</i> &lt; 0.01). Infectious skin diseases, in particular fungal infections, were amongst the most common diagnoses in the urban area of Haiti. Therefore, improved access to antimicrobial and anti-inflammatory medications would likely benefit Haitian patients with dermatological conditions. These findings may help local public health officials and future dermatological expeditions better serve this population.
DOI: 10.6084/m9.figshare.7042619.v1
title: Supplementary Material for: A Dementia Café as a Bridgehead for Community-Inclusive Care: Qualitative Analysis of Observations by On-the-Job Training Participants in a Dementia Café

description: <b><i>Background/Aims:</i></b> Dementia cafés are becoming widespread as a new approach to dementia care, but their operational procedures and significance have not been adequately studied. <b><i>Methods:</i></b> On-the-job training (OJT) for professionals planning to operate a dementia café in the future was conducted in a pioneering dementia café in Japan. The reports of OJT trainees’ observations and learning were analyzed qualitatively. <b><i>Results:</i></b> Reports could be summarized in up to 9 themes: 2 related to the atmosphere and significance of the café, 3 related to the guests, such as people with dementia and their families, and 4 related to the café staff. <b><i>Discussion:</i></b> The results of the present study identified the elements that make up dementia cafés and their significance and suggest that dementia cafés could be a new type of community resource for dementia care in the future.
DOI: 10.6084/m9.figshare.7835393.v1
title: Supplementary Data 2 for "Digital phenotyping by consumer wearables identifies sleep-associated markers of cardiovascular disease risk and biological aging"

description: All data and R code used in the study.<br>
DOI: 10.6084/m9.figshare.27146595.v2
title: <i>T. b. gambiense</i> type I minicircle annotation and gRNA alignment

description: Next, we used the predicted fully edited mRNA sequences to identify gRNA genes in the 121 <i>T. b. gambiense </i>type 1 Mongo minicircles. To reduce false positives, we limited the maximum number of gRNA genes encoded by a cassette to three. Meanwhile, the same sequence may be aligned to alternatively edited mRNAs and recorded as distinct gRNA genes. We noticed in some alternatively edited mRNAs that certain versions had additional unaccounted-for editing sites, but the same editing sites were covered by gRNAs in other versions. The errors were due to the limit on the number of gRNA genes and were corrected manually by carefully comparing the editing sites across different versions.
DOI: 10.6084/m9.figshare.c.3471585_d73.v1
title: Finokalia, Crete, submicron aerosol size distribution, 2014-2015

description: submicron aerosol size distribution,Finokalia, Crete,  2014-2015
DOI: 10.6084/m9.figshare.5125270.v1
title: Supplementary Material for: Inflammatory Activation after Experimental Cardiac Tamponade

description: <b><i>Background/Purpose:</i></b> Cardiac tamponade is a medical emergency situation associated with a high rate of life-threatening complications, even after immediate interventions. Our aim was to characterize the acute inflammatory consequences of this event in a clinically relevant large animal model. <b><i>Methods:</i></b> Cardiac tamponade was induced for 60 min in anesthetized, ventilated and thoracotomized minipigs by intrapericardial fluid administration, the mean arterial pressure (MAP) being maintained in the interval of 40-45 mm Hg (n = 8). A further group (n = 7) served as sham-operated control. The global macrohemodynamics, including the right- and left-heart end-diastolic volumes (RHEDV and LHEDV), the pulmonary vascular resistance index (PVRI) and the superior mesenteric artery (SMA) flow, were monitored for 240 min, and the intestinal microcirculatory changes (pCO<sub>2</sub> gap) were evaluated by indirect tonometry. Blood samples were taken for the determination of cardiac troponin T and vasoactive inflammatory mediators, including histamine, nitrite/nitrate, big-endothelin, superoxide and high-mobility group box protein-1 levels in association with intestinal leukocyte and complement activation. <b><i>Results:</i></b> The cardiac tamponade induced significant decreases in MAP, cardiac output, LHEDV and SMA flow, while the PVRI and the pCO<sub>2</sub> gap increased significantly. After the removal of fluid from the pericardial sac, the MAP and the LHEDV were decreased, while the PVRI and the pCO<sub>2</sub> gap remained elevated when compared with those in the sham-operated group. In the posttamponade period, the abrupt release of inflammatory mediators was accompanied by a significant splanchnic leukocyte accumulation and complement activation. <b><i>Conclusions:</i></b> The macrocirculatory and splanchnic microcirculatory disturbances were accompanied by a significant proinflammatory reaction; endothelin and the complement system may be significant components of the inflammatory cascade that is activated in this porcine model of pericardial tamponade.
DOI: 10.6084/m9.figshare.4244267.v1
title: Appendix C large tables

description: This excel workbook contains tables C12, C13 and C21. These were too large to fit in my thesis document and so are provided here instead.<br><br>
DOI: 10.6084/m9.figshare.7569032.v2
title: An Empirical Study of Machine Learning Algorithms for Stock Daily Trading Strategy

description: The file includes data, codes,and main results of the paper.<br>
DOI: 10.6084/m9.figshare.9168041.v2
title: A methodology to downscale water demand data with application to the Andes (Ecuador, Peru, Bolivia, Chile)

description: The Andes are a hotspot for water scarcity and anthropogenic pressure on water resources. Here we present high resolution gridded maps (3 arcseconds) of anthropogenic surface water demand in the Andes, disaggregated in the major types of water use: domestic users, irrigated area and hydropower. The dataset has been built by homogenizing, integrating and interpolating direct data from various national hydrological and meteorological services offices and institutions in charge of water resources management using relevant proxy datasets such as the WorldPop population maps and the MapSPAM initiative for irrigated area. <br>
DOI: 10.6084/m9.figshare.13215302.v2
title: CFID-AFLOW-1

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.21295593.v3
title: Data and code for 'Differential patterns of taxonomic and functional diversity for two groups of canopy arthropods across spatial scales'.

description: Data and code for <b>Differential patterns of taxonomic and functional diversity for two groups of canopy arthropods across spatial scales</b>. Data are community (site x species and site x functional group) matrices for hierarchically nested design: individual trees within stands within sites within ecoregions. Arthropods were sampled by canopy fogging.
DOI: 10.6084/m9.figshare.25858537.v2
title: Data from: School Leadership Management and Students’ Engagement Toward High-Quality Development in Rural Schools in Lishui City: Basis for a Framework

description: In the context of distance learning, student engagement has increasingly become a key concern for school administrators and educators. This study examines the impact of leadership management on the high-quality development of rural schools in Lishui City, Zhejiang Province, focusing on four aspects: the responsibilities and decision-making of school leaders, organizational design, talent development, and curriculum planning. A quantitative approach was adopted, involving a questionnaire survey of 130 teachers and 262 students from rural schools in Lishui City. The findings reveal that, in terms of high-quality development, both the school leadership management and student engagement are relatively low, with gender differences observed in student participation. This suggests that the leadership and management practices influencing the high-quality development of rural schools in Lishui are closely related to student engagement. The study recommends that efforts be made to enhance school leadership skills through targeted activities, to further improve student participation and foster high-quality school development.
DOI: 10.6084/m9.figshare.5024546.v4
title: Acer campestre chorology

description: Distribution map of field maple (<i>Acer campestre</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn"). <br>Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com). <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01