cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27270306
title: <b>Figure 4. Activation of innate immune signaling induces HSV-1 reactivation from latent infection.</b>

description: 4A-E. Neurons latently infected with Stayput-GFP were treated with ligands for the DNA/RNA sensing pathways: <br>4A. Number of Us11-GFP expressing neurons at 2 days post treatment with; Mock (not treated), LY294002 (20μM) and DMXAA (50 μg/mL). <br>4B. Number of Us11-GFP expressing neurons at 2 days post treatment with; Mock (not treated), LY294002 (20μM) and ADU-S100 (10 μg/mL).<br>4C. Number of Us11-GFP expressing neurons at 2 days post treatment with; Mock (not treated), LY294002 (20μM) and Poly(dA-dT)/LyoVec (5 μg/mL).  <br>4D. Number of Us11-GFP expressing neurons at 2 days post treatment with; Mock (not treated), LY294002 (20μM) and ISD (5μg/mL; D) <br>4E. Number of Us11-GFP expressing neurons at 2 days post treatment with; Mock (not treated), LY294002 (20μM), Poly(I:C) (HMW), or Poly(I:C) (LMW) (10 μg/mL).<br>4F. Number of Us11-GFP expressing neurons at 2 days post co-infection or Mock (not treated). Neurons latently infected with Stayput-GFP were co-infected with the HCoV-OC43 at an MOI of 3 PFU/cell.4G. Number of Us11-GFP expressing neurons at 2 days post treatment with; Mock (not treated), DMXAA (50 μg/mL) and DMXAA (50 μg/mL) + GNE-3511(4 μΜ). Neurons latently infected with Stayput-GFP were reactivated with DMXAA in the presence or absence of the DLK inhibitor GNE-3511 (4 μΜ).  4H. Relative expression of <i>ICP27</i> mRNA quantified by RT-qPCR at 18 hours post-reactivation (Phase I). Neurons latently infected with KOS-SPA and KOS-UL98 were treated with either LY294002 or DMXAA or LY294002, followed 2.5 hours later by DMXAA.
DOI: 10.6084/m9.figshare.27270306.v2
title: <b>Figure 4. Activation of innate immune signaling induces HSV-1 reactivation from latent infection.</b>

description: 4A-E. Neurons latently infected with Stayput-GFP were treated with ligands for the DNA/RNA sensing pathways: <br>4A. Number of Us11-GFP expressing neurons at 2 days post treatment with; Mock (not treated), LY294002 (20μM) and DMXAA (50 μg/mL). <br>4B. Number of Us11-GFP expressing neurons at 2 days post treatment with; Mock (not treated), LY294002 (20μM) and ADU-S100 (10 μg/mL).<br>4C. Number of Us11-GFP expressing neurons at 2 days post treatment with; Mock (not treated), LY294002 (20μM) and Poly(dA-dT)/LyoVec (5 μg/mL).  <br>4D. Number of Us11-GFP expressing neurons at 2 days post treatment with; Mock (not treated), LY294002 (20μM) and ISD (5μg/mL; D) <br>4E. Number of Us11-GFP expressing neurons at 2 days post treatment with; Mock (not treated), LY294002 (20μM), Poly(I:C) (HMW), or Poly(I:C) (LMW) (10 μg/mL).<br>4F. Number of Us11-GFP expressing neurons at 2 days post co-infection or Mock (not treated). Neurons latently infected with Stayput-GFP were co-infected with the HCoV-OC43 at an MOI of 3 PFU/cell.4G. Number of Us11-GFP expressing neurons at 2 days post treatment with; Mock (not treated), DMXAA (50 μg/mL) and DMXAA (50 μg/mL) + GNE-3511(4 μΜ). Neurons latently infected with Stayput-GFP were reactivated with DMXAA in the presence or absence of the DLK inhibitor GNE-3511 (4 μΜ).  4H. Relative expression of <i>ICP27</i> mRNA quantified by RT-qPCR at 18 hours post-reactivation (Phase I). Neurons latently infected with KOS-SPA and KOS-UL98 were treated with either LY294002 or DMXAA or LY294002, followed 2.5 hours later by DMXAA.
DOI: 10.5281/zenodo.14589216
title: Finnish AGel amyloidosis haplotype sharing trees
DOI: 10.5281/zenodo.14589217
title: Finnish AGel amyloidosis haplotype sharing trees
DOI: 10.15468/dl.38untu
title: Occurrence Download

description: A dataset containing 2103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syngnathus louisianae Günther, 1870",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 2103 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054838-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kpt535
title: Occurrence Download

description: A dataset containing 3668 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dalea candida Willd.",
 "Geometry POLYGON((-109 26, -87 26, -87 44, -109 44, -109 26))"
 ]
}

 The dataset includes 3668 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054837-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10357151
title: Rabindrik Values Questionnaire data
DOI: 10.6084/m9.figshare.25627044
title: Code and data for article "Negative global-scale association between genetic diversity and speciation rates in mammals"

description: This is a little overview of the analyses performed for the manuscript submitted entitled "Negative global-scale association between genetic diversity and speciation rates in mammals".OtherDataThis folder includes data from previously published articles and used for this project. It includes the available geographic coordinates for cyt b sequences, data from Upham et al. 2019 (DR tip speciation rates and used nuclear loci), the trait data and other nuclear datasets. Other Upham et a. 2019 files that were required to get ClaDS speciation rates are in 5.speciation_rate/inputs folder.Figures_tableThis folder includes all the table, and main figures and supplementary figures used in the manuscript, both in pdf and png format. The folder Phylopics includes the phylopic svg files used in figure 1, and it includes link for each in PhylopicLinks.txt. Scripts used in the analyses organized by folders1. Folder_per_family.R:* Extract GenBank sequence for a given family to get metadata per family using NCBI taxonomy database and prepare folders to parallelize SuperCrunch per family 2.nameMatching Scripts that improve how many sequences in GenBank can be matched into Upham et al. 2019 tree3.superCrunch_family Scripts to run alignment of GenBank sequences per species4.genetic_diversityScripts to get genetic diversity per species and the data used for analyses.5.speciation_Rate Scripts to get speciation rates per species and the data used for analyses.6.mutationRate Scripts to get mutation rates per species and the data used for analyses.7.pgls Scripts to run PGLS analyses and the results.8.bmlmScripts to run BMLM analyses and the resultsFigures_v3.RmdRmarkdown file with code used to make all the figures, including some extra models mentioned in the manuscript. It also includes the code used to export the Source Data files used for each figure, versions of the used packages and exports the R working environment.Output as HTML file Figures_v3.html that can be opened in a browser.data.tar.xzSource data file with all the data used to make the figures.
DOI: 10.6084/m9.figshare.25627044.v1
title: AfonsoSilvaEtAl_MammalsGeneticDiversitySpeciationRates.zip

description: This zip file contains all used data and analyses performed for the manuscript submitted entitled "Negative global-scale association between genetic diversity and speciation rates in mammals".
DOI: 10.15468/dl.5va69h
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Belize",
 "DatasetKey is one of (Tropicos MO Specimen Data, Tropicos Specimens Non-MO, Natural History Museum (London) Collection Specimens, Digitalización y Sistematización de las Colecciones Biológicas Nacionales del Instituto de Biología, UNAM (Plantas vasculares), Rapid Assessment Program (RAP) Biodiversity Survey Database, Louisiana State University, Shirley C. Tucker Herbarium - Vascular Plants, NMNH Extant Specimen Records (USNM, US))",
 "OccurrenceStatus is Present",
 "TaxonKey is Critonia sexangularis (Klatt) R.M.King & H.Rob."
 ]
}

 The dataset includes 17 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054839-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tsdajw
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syngnathus springeri Herald, 1942",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 152 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054840-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ey4c2g
title: Occurrence Download

description: A dataset containing 2070440 species occurrences available in GBIF matching the query:
{
 "GadmGid" : [
 "is SWE.1_1"
 ]
}

 The dataset includes 2070440 records from 229 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054833-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u4x25k
title: Occurrence Download

description: A dataset containing 7387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Desmanthus illinoensis (Michx.) MacMill. ex B.L.Rob. & Fernald",
 "Geometry POLYGON((-109 26, -87 26, -87 44, -109 44, -109 26))"
 ]
}

 The dataset includes 7387 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054841-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrx9cf
title: Occurrence Download

description: A dataset containing 10255 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Synodus foetens (Linnaeus, 1766)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 10255 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054842-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.68h9ay
title: Occurrence Download

description: A dataset containing 34053414 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material citation, Specimen, Occurrence evidence, Fossil)",
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 34053414 records from 2676 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005319-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.augahz
title: Occurrence Download

description: A dataset containing 5155688 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is China"
 ]
}

 The dataset includes 5155688 records from 2633 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034168-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive161507.20241212.9.2
title: <i>Roseomonas</i> <i>tokyonensis</i> Furuhata <i>et al.</i> 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive161507.20251217.10
title: <i>Roseomonas</i> <i>tokyonensis</i> Furuhata <i>et al.</i> 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive161508.20241212.9.2
title: <i>Bacteroides</i> <i>propionicifaciens</i> Ueki <i>et al.</i> 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive161508.20251217.10
title: <i>Bacteroides</i> <i>propionicifaciens</i> Ueki <i>et al.</i> 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.uncvs4
title: Occurrence Download

description: A dataset containing 732 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((110.13931 -46.72792,173.86069 -46.72792,173.86069 -21.27208,110.13931 -21.27208,110.13931 -46.72792))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hookerochloa hookeriana"
 ]
}

 The dataset includes 732 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078906-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive161509.20241212.9.2
title: <i>Natrinema</i> <i>gari</i> Tapingkae <i>et al.</i> 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive161509.20251217.10
title: <i>Natrinema</i> <i>gari</i> Tapingkae <i>et al.</i> 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.cqmsuk
title: Occurrence Download

description: A dataset containing 5976 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apidae",
 "Country is China",
 "Year is greater than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5976 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078890-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive161510.20241212.9.2
title: Nocardia roseoalba Jiang et al.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive161510.20251217.10
title: Nocardia roseoalba Jiang et al.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.7mrrez
title: Occurrence Download

description: A dataset containing 3337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melitaea varia",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 5000",
 "Year is greater than or equal to 1970",
 "Country is one of (Italy, Switzerland, Germany, Austria, Slovenia, France)"
 ]
}

 The dataset includes 3337 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078886-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive161511.20241212.9.2
title: <i>Dietzia</i> <i>natronolimnaea</i> Duckworth <i>et al.</i> 1999

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.aas5jq
title: Occurrence Download

description: A dataset containing 440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (function (name, pos = -1, envir = as.environment(pos), all.names = FALSE, pattern, sorted = TRUE) \n{\n if (!missing(name)) {\n pos &lt;- tryCatch(name, error = function(e) e)\n if (inherits(pos, \"error\")) {\n name &lt;- substitute(name)\n if (!is.character(name)) \n name &lt;- deparse(name)\n warning(gettextf(\"%s converted to character string\", sQuote(name)), domain = NA)\n pos &lt;- name\n }\n }\n all.names &lt;- .Internal(ls(envir, all.names, sorted))\n if (!missing(pattern)) {\n if ((ll &lt;- length(grep(\"[\", pattern, fixed = TRUE))) && ll != length(grep(\"]\", pattern, fixed = TRUE))) {\n if (pattern == \"[\") {\n pattern &lt;- \"\\\\[\"\n warning(\"replaced regular expression pattern '[' by '\\\\\\\\['\")\n }\n else if (length(grep(\"[^\\\\\\\\]\\\\[&lt;-\", pattern))) {\n pattern &lt;- sub(\"\\\\[&lt;-\", \"\\\\\\\\\\\\[&lt;-\", pattern)\n warning(\"replaced '[&lt;-' by '\\\\\\\\[&lt;-' in regular expression pattern\")\n }\n }\n grep(pattern, all.names, value = TRUE)\n }\n else all.names\n}, Acanthoscelides obtectus, Aulacaspis yasumatsui, Brontispa longissima, Callosobruchus maculatus, Frankliniella occidentalis, Heteropsylla cubana, Leptocybe invasa, Opogona sacchari, Quadrastichus erythrinae, Procambarus clarkii, Corythucha ciliata, Blattella germanica)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Country is one of (China, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 440 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078911-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive161511.20251217.10
title: <i>Dietzia</i> <i>natronolimnaea</i> Duckworth <i>et al.</i> 1999

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive161512.20250331.9.3
title: <i>Methylobacterium</i> sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.6dbzb4
title: Occurrence Download

description: A dataset containing 13736 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((27.98747 9.39687,28.12125 8.98664,28.692 8.49615,29.63731 7.66677,30.62722 6.81063,30.98394 5.8029,31.6082 4.6703,31.78656 5.82965,31.59037 8.20185,31.76873 9.49497,30.9661 9.91412,29.48571 9.45038,27.98747 9.39687))"
 ]
}

 The dataset includes 13736 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078905-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mr6vzc
title: Occurrence Download

description: A dataset containing 440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (function (name, pos = -1, envir = as.environment(pos), all.names = FALSE, pattern, sorted = TRUE) \n{\n if (!missing(name)) {\n pos &lt;- tryCatch(name, error = function(e) e)\n if (inherits(pos, \"error\")) {\n name &lt;- substitute(name)\n if (!is.character(name)) \n name &lt;- deparse(name)\n warning(gettextf(\"%s converted to character string\", sQuote(name)), domain = NA)\n pos &lt;- name\n }\n }\n all.names &lt;- .Internal(ls(envir, all.names, sorted))\n if (!missing(pattern)) {\n if ((ll &lt;- length(grep(\"[\", pattern, fixed = TRUE))) && ll != length(grep(\"]\", pattern, fixed = TRUE))) {\n if (pattern == \"[\") {\n pattern &lt;- \"\\\\[\"\n warning(\"replaced regular expression pattern '[' by '\\\\\\\\['\")\n }\n else if (length(grep(\"[^\\\\\\\\]\\\\[&lt;-\", pattern))) {\n pattern &lt;- sub(\"\\\\[&lt;-\", \"\\\\\\\\\\\\[&lt;-\", pattern)\n warning(\"replaced '[&lt;-' by '\\\\\\\\[&lt;-' in regular expression pattern\")\n }\n }\n grep(pattern, all.names, value = TRUE)\n }\n else all.names\n}, Acanthoscelides obtectus, Aulacaspis yasumatsui, Brontispa longissima, Callosobruchus maculatus, Frankliniella occidentalis, Heteropsylla cubana, Leptocybe invasa, Opogona sacchari, Quadrastichus erythrinae, Procambarus clarkii, Corythucha ciliata, Blattella germanica)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Country is one of (China, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 440 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078907-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive161512.20251217.10
title: <i>Methylobacterium</i> sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive161513.20250331.9.3
title: <i>Methylobacterium</i> sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.94uunr
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pseudotsuga gausseni"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078912-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive161513.20251217.10
title: <i>Methylobacterium</i> sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.