cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14362023
title: Data for 'Solid Effect Dynamic Nuclear Polarization Enhancement of >500 at 9.4 T'

description: This data is associated with the publication "Solid Effect Dynamic Nuclear Polarization Enhancement of >500 at 9.4 T" and contains the NMR raw data discussed in the publication.
DOI: 10.15468/3b2xug
title: Projeto Conexão Mata Atlântica - Monitoramento Ecossistêmico - Fauna e Flora - Rio de Janeiro - Campanha 06

description: Projeto Conexão Mata Atlântica - Monitoramento Ecossistêmico - Fauna e Flora - Rio de Janeiro - Campanha 06 (2023).
O Projeto Conexão Mata Atlântica - Recuperação de Serviços de Clima e Biodiversidade no Corredor Sudeste da Mata Atlântica Brasileira - é uma iniciativa do governo federal, por meio do Ministério da Ciência, Tecnologia e Inovações (MCTI), e dos governos dos estados de São Paulo, Minas Gerais e Rio de Janeiro, com apoio técnico e financeiro do GEF/BID. Tem como objetivo recuperar e preservar serviços ecossistêmicos associados à biodiversidade e captura de carbono da floresta, a partir de uma abordagem de manejo sustentável da paisagem na região da bacia do rio Paraíba do Sul. Atua na promoção de atividades de restauração ecológica de florestas nativas e regeneração natural, com benefícios de captura e manutenção de estoques de carbono relacionados ao uso da terra, mudança do uso do solo e silvicultura, para incremento da biodiversidade.
DOI: 10.6084/m9.figshare.c.3640946_d11
title: Additional file 7: Table S4. of Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion

description: Is a table listing the up-regulated genes in SZ. (XLS 212Â kb)
DOI: 10.6084/m9.figshare.c.3640946_d12
title: Additional file 9: Figure S3. of Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion

description: Is a figure with a bar plot presenting uncorrected expression values of 22q11.2 genes in control and SZ samples. Three genes flanking the deleted region at either side were also included. Asterisks (*) on the top of genes indicated significantly differential expression at the genome-wide scale (FDRâ
DOI: 10.6084/m9.figshare.c.3640946_d10
title: Additional file 8: Table S5. of Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion

description: Is a table listing the down-regulated genes in SZ. (XLS 127Â kb)
DOI: 10.6084/m9.figshare.c.3640946_d8
title: Additional file 1: Table S1. of Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion

description: Is a table listing the patients and controls used in this study. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.c.3640946_d6
title: Additional file 5: Table S2. of Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion

description: Is a table listing summary statistics of RNA-seq. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3640946_d3
title: Additional file 6: Table S3. of Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion

description: Is a table listing the entire gene list with corrected expression values. (XLS 5575Â kb)
DOI: 10.6084/m9.figshare.c.3640946_d4
title: Additional file 11: Table S6. of Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion

description: Is a table listing enriched GO terms of the co-expression networks in different regions of the embryonic and adolescence brains. (XLS 482Â kb)
DOI: 10.5519/qd.67hmm39e
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.15468/dl.ruqpgc
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Antarctica, Asia, Oceania, Europe, North America, South America)",
 "TaxonKey is Paracles fusca Walker, 1856",
 "Year 1856-2024"
 ]
}

 The dataset includes 108 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033491-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3623513_d1
title: Additional file 2: Table S2. of Comparative transcriptional profiling of orange fruit in response to the biocontrol yeast Kloeckera apiculata and its active compounds

description: List and MapMan analysis of differentially expressed genes in citrus in response to K. apiculata, the extract and phenylethanol, respectively. (XLS 264 kb)
DOI: 10.6084/m9.figshare.c.3623495_d1
title: Additional file 1 of Measuring and assessing HIV/AIDS stigma and discrimination among migrant workers in Zhejiang, China

description: Data set of the C-HSS (B1-B24) and knowledge of HIV/AIDS (C1-C8). (XLS 447 kb)
DOI: 10.6084/m9.figshare.c.3623486_d1
title: Additional file 1: Table S1. of Association of a rare NOTCH4 coding variant with systemic sclerosis: a family-based whole exome sequencing study

description: Table of rare coding variants segregating with the SSc/scleroderma phenotype. (XLS 27 kb)
DOI: 10.6084/m9.figshare.c.3623429_d5
title: Additional file 2: Table S2. of Small RNA and PARE sequencing in flower bud reveal the involvement of sRNAs in endodormancy release of Japanese pear (Pyrus pyrifolia 'Kosui')

description: PAREsnip identified the target of small RNAs. (XLSX 672Â kb)
DOI: 10.6084/m9.figshare.c.3623429_d4
title: Additional file 5: Table S4. of Small RNA and PARE sequencing in flower bud reveal the involvement of sRNAs in endodormancy release of Japanese pear (Pyrus pyrifolia 'Kosui')

description: Abundance of novel miRNAs in each libary. (XLSX 57Â kb)
DOI: 10.6084/m9.figshare.c.3623429_d3
title: Additional file 1: Table S1. of Small RNA and PARE sequencing in flower bud reveal the involvement of sRNAs in endodormancy release of Japanese pear (Pyrus pyrifolia 'Kosui')

description: Information of sRNA clusers annotated by ShortStack. (XLSX 28366Â kb)
DOI: 10.6084/m9.figshare.c.3623429_d1
title: Additional file 3: Table S3. of Small RNA and PARE sequencing in flower bud reveal the involvement of sRNAs in endodormancy release of Japanese pear (Pyrus pyrifolia 'Kosui')

description: Target of known miRNAs in pear identified by PARE-seq. (XLSX 38 kb)
DOI: 10.15468/dl.zbnepb
title: Occurrence Download

description: A dataset containing 6286 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tortella fragilis (Drumm.) Limpr."
 ]
}

 The dataset includes 6286 records from 187 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033492-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3609011_d5
title: Additional file 6: of The human disease network in terms of dysfunctional regulatory mechanisms

description: 154 related pathways in Allergic asthma, Type 2 diabetes and Chronic kidney disease. (XLS 49Â kb)
DOI: 10.6084/m9.figshare.c.3609011_d3
title: Additional file 3: of The human disease network in terms of dysfunctional regulatory mechanisms

description: 1326 significant Disease-Disease links. (XLS 358Â kb)
DOI: 10.6084/m9.figshare.c.3609011_d2
title: Additional file 7: of The human disease network in terms of dysfunctional regulatory mechanisms

description: FZD8, FOXN1 and TLE2 -centered differentially coexpressed links of Allergic asthma, Type 2 diabetes and Chronic kidney disease. (XLS 34Â kb)
DOI: 10.6084/m9.figshare.c.3609011_d1
title: Additional file 1: of The human disease network in terms of dysfunctional regulatory mechanisms

description: Series information of 108 diseases from GEO. (XLS 41Â kb)
DOI: 10.6084/m9.figshare.c.3608984_d1
title: Additional file 1: of Functional genomics analyses of RNA-binding proteins reveal the splicing regulator SNRPB as an oncogenic candidate in glioblastoma

description: Contains supplementary Tables S1–S10. Table S1. GBM RNA-Seq samples from TCGA and Normal samples from SRA and TCGA. Table S2. Differentially expressed RBPs in GBM data from TCGA. Table S3. Differentially expressed RBPs in GSCs data. Table S4. RBPs expression in GBM samples from TCGA vs. normal brain samples from GTEx. Table S5. Wilcoxon rank-sum test results: GBM vs. lower grade gliomas. Table S6. Knockdown efficiency measured by qRT-PCR. Table S7. Differentially expressed genes upon SNRPB knockdown. Table S8. Functional annotation of differentially expressed genes upon SNRPB knockdown. Table S9. Summary of differentially regulated splicing events upon SNRPB knockdown. Table S10. Functional annotation of differentially spliced genes upon SNRPB knockdown. (XLS 822 kb)
DOI: 10.6084/m9.figshare.c.3608924_d2
title: Additional file 3: of Comparative sequence analysis of Cyclospora cayetanensis apicoplast genomes originating from diverse geographical regions

description: 33,598 bases long ungapped apicoplast genome sequences for building the tree in Fig.Â 5. KP866208_corrected was not included in this analysis. The sequences were first aligned on MEGA7 and bases positions with â  Nâ   were removed from all strains to create an ungapped sequence file. MEGA 7 suite was used for this analysis as described. (FASTA 409 kb)
DOI: 10.15468/dl.uj9wtw
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anathallis dantasii Luer, Toscano & Baptista"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033493-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3597251_d2
title: Additional file 2: of HIV-1 and HIV-2 exhibit similar mutation frequencies and spectra in the absence of G-to-A hypermutation

description: Table S2. Output of 2Â Ă Â 150 Illumina sequencing of HIV-1 and HIV-2 after data processing. For each sample, the numbers of read pairs before and after quality filtering are indicated, both grouped across all amplicons and separated by amplicon.
DOI: 10.6084/m9.figshare.c.3597248_d4
title: Additional file 3: of 
                     De novo assembly and comparative transcriptome analysis of Euglena gracilis in response to anaerobic conditions

description: Data and list for 2080 DEGs in response to anaerobic conditions. (XLS 1336Â kb)
DOI: 10.6084/m9.figshare.c.3597251_d5
title: Additional file 5: of HIV-1 and HIV-2 exhibit similar mutation frequencies and spectra in the absence of G-to-A hypermutation

description: Table S3. Determination of intra-sample recombination frequencies from PCR. The frequency of intra-sample recombination resulting from PCR was determined using a set of genetic markers that were incorporated into the HIV-1 and HIV-2 plasmid controls.
DOI: 10.6084/m9.figshare.c.3597266_d1
title: Additional file 1: of Distal 10q trisomy with copy number gain in chromosome region 10q23.1â  10q25.1: the Wnt signaling pathway is the most pertinent to the gene content in the region of copy number gain: a case report

description: Detail information of the qPCR primers, gene content of the CNVR, and results of GO analysis.
DOI: 10.6084/m9.figshare.c.3597251_d6
title: Additional file 11: of HIV-1 and HIV-2 exhibit similar mutation frequencies and spectra in the absence of G-to-A hypermutation

description: Table S6. HIV-1 and HIV-2 primer and barcode sequences for Illumina sequencing.
DOI: 10.6084/m9.figshare.c.3597251_d7
title: Additional file 3: of HIV-1 and HIV-2 exhibit similar mutation frequencies and spectra in the absence of G-to-A hypermutation

description: Dataset S1. HIV-1 and HIV-2 mutation frequencies determined by Illumina sequencing. For each sample, this dataset lists the numbers of reference bases, mutations, mutation frequencies, and relative percentages of many different mutational types. The data is shown both grouped across all amplicons and separated by amplicon (as different tabs within the spreadsheet).
DOI: 10.6084/m9.figshare.c.3597263_d3
title: Additional file 3: of Variation in population levels of physical activity in European children and adolescents according to cross-European studies: a systematic literature review within DEDIPAC

description: Data extraction file. The complete data extraction file. (XLSX 91Â kb)
DOI: 10.15468/dl.gf6r3w
title: Occurrence Download

description: A dataset containing 6384 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tortella humilis (Hedw.) Jenn."
 ]
}

 The dataset includes 6384 records from 205 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033495-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3600809_d10
title: Additional file 2: of Phylogenetic approaches to microbial community classification

description: Summary of microbiome samples. Human oral cavity samples came from HMP with associated abbreviations. OTUs were picked using a closed-reference strategy with a 97Â % identity threshold. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3600998_d4
title: Additional file 2: Table S2. of MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae

description: 75 miRNAs with strong evidence of being known miRNAs in other species (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3601019_d2
title: Additional file 13: Table S10. of The genome of the emerging barley pathogen Ramularia collo-cygni

description: RT-PCR primer details. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3601016_d2
title: Additional file 4:Â Table S3. of VarElect: the phenotype-based variation prioritizer of the GeneCards Suite

description: Vcf file produced from the exome sequencing of the Congenital Diarrhea clinical case described in the results section. (GZ 14654Â kb)
DOI: 10.6084/m9.figshare.c.3600998_d5
title: Additional file 5: Table S5. of MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae

description: Spearman's coefficients (Ď ) and p-values for the correlation between expression values of D. melanogaster and B. dorsalis orthologous miRNAs across life stages. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3601019_d3
title: Additional file 10: Table S8. of The genome of the emerging barley pathogen Ramularia collo-cygni

description: BLASTp top hits for putative metabolic cluster genes on Contig17. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3601022_d2
title: Additional file 3 of Do little interactions get lost in dark random forests?

description: Simulation code. Replication material for all simulation studies. (ZIP 44 kb)
DOI: 10.6084/m9.figshare.c.3601028_d1
title: Additional file 5: Table S10. of Cyclic AMP signaling restricts activation and promotes maturation and antioxidant defenses in astrocytes

description: Antibodies used in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3601028_d2
title: Additional file 3: Tables S2–S8. of Cyclic AMP signaling restricts activation and promotes maturation and antioxidant defenses in astrocytes

description: Lists of genes regulated in cAMP-treated cells and present in published astrocyte signatures. Genes that are regulated in cAMP-treated cells (genes within the “core enrichment” as defined by GSEA analysis), and that are reported to be regulated in previously published astrocyte signatures: developing (Table S2), mature (Table S3), cytokine-treated (Table S4), LPS (Table S5), MCAO (Table S6), in vivo (Table S7) and in vitro (Table S8) astrocytes. The lists represent the respective intersections in the Venn diagrams of Figure 4C. In GSEA analysis, genes were ranked on the basis of signal-to-noise ratio within the microarray data, starting with strongly upregulated and ending with strongly downregulated genes. The third column of the tables indicate the rank of the respective gene, i.e. low rank values indicate strong upregulation and high ones close to the maximal value of 21,492 indicate strong downregulation. (XLS 108 kb)
DOI: 10.6084/m9.figshare.c.3601022_d4
title: Additional file 1 of Do little interactions get lost in dark random forests?

description: Software package. Version of the software package ranger, including the pairwise permutation importance measure. (GZ 39.9 kb)
DOI: 10.6084/m9.figshare.c.3601016_d4
title: Additional file 5:Â Table S4. of VarElect: the phenotype-based variation prioritizer of the GeneCards Suite

description: Two vcf files produced from the exome sequencing of the Capillary Leak Syndrome clinical case described in the results section, consisting of the inflicted child as well as cousin. (GZ 13018Â kb)
DOI: 10.6084/m9.figshare.c.3601019_d5
title: Additional file 9: Table S7. of The genome of the emerging barley pathogen Ramularia collo-cygni

description: RT-PCR analysis of Ramularia collo-cygni homologs of dothistromin biosynthesis genes and predicted secondary metabolism genes on Contig17. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3601016_d5
title: Additional file 3: Table S2. of VarElect: the phenotype-based variation prioritizer of the GeneCards Suite

description: Gene lists and corresponding phenotypes for Phenomyzer and Exomiser benchmarking. (XLSX 16.0 kb)
DOI: 10.6084/m9.figshare.c.3601019_d6
title: Additional file 12: Table S9. of The genome of the emerging barley pathogen Ramularia collo-cygni

description: Details of fungal genomes used for comparative genomics in this study. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.25028460
title: Evaluation of master’s degree programmes in project and construction management: an agglomerative hierarchical clustering study

description: This study examines master's degree programmes in project and construction management in Turkey and the TRNC until 2022. It covers 16 master's degree programmes and represents their current status. The study groups courses to evaluate and develop the contents of the master's degree programmes. It creates course knowledge areas through course grouping and provides the numerical data necessary for the clustering process. The study clusters similar and related master's degree programmes using the AHC method and proposes new programme names for the classes obtained with AHC. This paper intends to serve as a guide for research on active master's degree programmes in project and construction management, to update and/or develop such programmes, and to evaluate the past and present situation for future studies.
DOI: 10.6084/m9.figshare.25028460.v1
title: Evaluation of master’s degree programmes in project and construction management: an agglomerative hierarchical clustering study

description: This study examines master's degree programmes in project and construction management in Turkey and the TRNC until 2022. It covers 16 master's degree programmes and represents their current status. The study groups courses to evaluate and develop the contents of the master's degree programmes. It creates course knowledge areas through course grouping and provides the numerical data necessary for the clustering process. The study clusters similar and related master's degree programmes using the AHC method and proposes new programme names for the classes obtained with AHC. This paper intends to serve as a guide for research on active master's degree programmes in project and construction management, to update and/or develop such programmes, and to evaluate the past and present situation for future studies.
DOI: 10.6084/m9.figshare.25111234
title: Environmental life cycle assessment (LCA) for design of climate-resilient bridges – a comprehensive review and a case study

description: The life cycle assessment (LCA) study of a bridge and bridge network would provide the environmental profile and hotspot information including the GHG emission of different life stages, among the components. Compared with a rapid adoption of Road LCA into the procurement process in the developed countries, Bridge LCA however remains a nascent area where a few studies conducted in North America. The critical issues of environmental profile, hotspots and benchmarks of bridges remain a challenge due to the complexity of bridge structures, data collection and unfamiliarity of LCA in the bridge community. To address the challenge, this study presents a comprehensive bibliometric analysis and review regarding life cycle environmental impacts assessment of bridge projects around the world to identify the research pattern in order to capture the areas of research needed inside this theme. As a proof of concept, this study continues with conducting an LCA case study of a Bridge Replacement Project on a Canadian signature highway, demonstrating the adoption of the LCA methodology and a framework to streamline the collection of data, to develop, present, and interpret the environmental impacts, in terms of the durability and service life of the bridge asset. The study found that stainless steel rebar decks outperformed black steel decks in terms of CO2 reduction by over 10%, with transport fleet impacts being a significant part of the bridge’s overall environmental impact, highlighting the need for diverse functional units in bridge life cycle assessment studies.
DOI: 10.6084/m9.figshare.25111234.v1
title: Environmental life cycle assessment (LCA) for design of climate-resilient bridges – a comprehensive review and a case study

description: The life cycle assessment (LCA) study of a bridge and bridge network would provide the environmental profile and hotspot information including the GHG emission of different life stages, among the components. Compared with a rapid adoption of Road LCA into the procurement process in the developed countries, Bridge LCA however remains a nascent area where a few studies conducted in North America. The critical issues of environmental profile, hotspots and benchmarks of bridges remain a challenge due to the complexity of bridge structures, data collection and unfamiliarity of LCA in the bridge community. To address the challenge, this study presents a comprehensive bibliometric analysis and review regarding life cycle environmental impacts assessment of bridge projects around the world to identify the research pattern in order to capture the areas of research needed inside this theme. As a proof of concept, this study continues with conducting an LCA case study of a Bridge Replacement Project on a Canadian signature highway, demonstrating the adoption of the LCA methodology and a framework to streamline the collection of data, to develop, present, and interpret the environmental impacts, in terms of the durability and service life of the bridge asset. The study found that stainless steel rebar decks outperformed black steel decks in terms of CO2 reduction by over 10%, with transport fleet impacts being a significant part of the bridge’s overall environmental impact, highlighting the need for diverse functional units in bridge life cycle assessment studies.
DOI: 10.6084/m9.figshare.c.3603176_d2
title: Additional file 1: of Sociodemographic, clinical, and psychosocial factors associated with depression among type 2 diabetic outpatients in Black Lion General Specialized Hospital, Addis Ababa, Ethiopia: a cross-sectional study

description: This is a cleaned comma delimited (*.csv) dataset titled â  Patients sociodemographic, clinical, psychosocial, and depressive symptom raw dataâ  . It comprises patientsâ   sociodemographic, clinical, psychosocial, and depressive symptoms information. All data was anonymized. (CSV 87 kb)