cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.jb48dg0/1
title: social_capital_corruption_replication

description: The zip file contains a CSV of data on the corruption risk scores and social network structure of Hungarian settlements. We also include control variables, described in the readme.txt file. We include code in the R programming language to recreate the models and tables in our paper.
DOI: 10.5061/dryad.jc7s27r/1
title: Scale insect abundance, impervious surface proportions, and temperature data for Acer rubrum study trees

description: Scale insect abundance, impervious surface proportions, and temperature data for Acer rubrum study trees. Scale insect abundance, tree condition, DBH, and Impervious surface (20 m) collected in the field. Impervious surface (125 m) and temperature data was sourced from GIS files and analyzed in R.
DOI: 10.5061/dryad.k205t00/1
title: Supplementary data for meta analysis
DOI: 10.5061/dryad.m66b10q.1
title: Data from: Climbing adaptations, locomotory disparity, and ecological convergence in ancient stem ‘kangaroos’
DOI: 10.5061/dryad.m66b10q.1/1.1
title: Den Boer et al_SourceCode
DOI: 10.5061/dryad.m66b10q.1/2.1
title: Den Boer et al_Astragalus-Trochlear_Results
DOI: 10.5061/dryad.m66b10q.1/3.1
title: Den Boer et al_Astragalus-Medial_Results
DOI: 10.5061/dryad.m66b10q.1/4.1
title: Den Boer et al_Astragalus-Anterior_Results
DOI: 10.5061/dryad.m66b10q.1/5.1
title: Den Boer et al_Astragalus-Plantar_Results
DOI: 10.5061/dryad.m66b10q.2/10.2
title: Den Boer et al_Ungual-Lateral_Results
DOI: 10.5061/dryad.m66b10q.2/9.2
title: Den Boer et al_Ungual-Dorsal_Results
DOI: 10.5061/dryad.nf63rb8/1
title: Data for HIV 6MW PLOS ONE

description: Two sheets one data and one code books included in this file.
DOI: 10.5061/dryad.ts0jb2s/1
title: Friesen_2019_EcologicalApplications_NetworkAnalysis_Data

description: Data used to evaluate ecological connectivity via adult movement using network centrality metrics, multiplex network structures, and network density. Northern Shelf Bioregion, British Columbia, Canada
DOI: 10.5061/dryad.vc6s461/1
title: Transcriptome assembly of Rhodonia placenta FPRL 280

description: Transcriptome assembly of Rhodonia placenta FPRL 280, assembled by trinity. The files contains 114 539 isoforms from 56 520 contigs
DOI: 10.5061/dryad.vc6s461/2
title: Gene lists from all pairwise contrasts

description: Lists of genes that are differential expressed between pairwise comparisons of different treatments. The files are named based on the pairs compared. A read me file is included in the folder and explains the short names of the different treatments.
DOI: 10.5061/dryad.vc6s461/3
title: Gene lists from multifactorial contrasts

description: Lists of genes of differential expressed genes from edgeR. The lists are from differential expression analyses among different wood modification treatments, using time as factor. The files named ..._Pospl1_annotation.txt include gene annotations from the JGI sequenced MAD 698-R.
DOI: 10.17632/39my4f5hb4.1
title: Data for: Regional Upper Albian-Lower Cenomanian Sequence Boundaries, Texas Comanche Shelf: Is timing related to Oceanic Tectonics?
DOI: 10.17632/b4dgp5xrw2.1
title: Data for: Homeownership and Wealth Accumulation for Low-Income Households
DOI: 10.17632/dx5rgvxwcr.1
title: Data for: Gender Disparities in Head and Neck Cancer Chemotherapy Clinical Trials Participation and Treatment.
DOI: 10.17632/j8kmdgkvs8.4
title: Data for: Interactive Programs of MC-ICPMS Data Processing for 230Th/U Geochronology

description: Matlab programs for MC-ICPMS U-Th data processing
DOI: 10.17632/krd2w43xtg.1
title: Data for: Stability Analysis on Veneer Cover System for Landfill Considering the Effect of Internal Seeper

description: direct-sliping failure，analysis result of both failure，Calculation process of Fsf，analysis result of Fsf，floating-uplifted failure
DOI: 10.17632/r7vb9k2mc3.1
title: Data for: How outcome uncertainty, loss aversion and team quality affect stadium attendance in Dutch professional football
DOI: 10.17632/s6dvw52dyx.1
title: Data for: Stability Analysis on Veneer Cover System for Landfill Considering the Effect of Internal Seeper

description: These data mainly include the process and results of calculating the safety factor by different methods
DOI: 10.17632/wk6mybfjys.1
title: Data for: 3347947

description: A research paper about the role of the Security Council in keeping peace and security in Africa, shedding the light on the Libyan crisis as a case study considering it one of the highest intensity spots in Africa.
DOI: 10.5061/dryad.0tr36fp/10
title: L14 ABC infile

description: This is the infile for the ABC analyses of L14. This file contains only the focal SNPs with one row per SNP (plus a header row with variance effective population sizes). Allele frequencies are then given per generation with sublines A and then B. Each row begins with a locus ID, coded as scaffold and position (in bp).
DOI: 10.5061/dryad.0tr36fp/5
title: L14 ABC summary script

description: This R script provides summaries of the credibility and magnitude of estimates of selection, as well as scatterplots of selection coefficient estimates a plot of posterior probabilities for different models.
DOI: 10.5061/dryad.0tr36fp/6
title: Pop. genetic comparisons R script

description: This R script provides analyses comparing patterns of allele frequency change and selection among lines.
DOI: 10.5061/dryad.0tr36fp/7
title: Linkage disequilibrium script

description: This R script plots LD dendrograms, heatmaps, and networks, and plots patterns of allele frequency change by LD cluster.
DOI: 10.5061/dryad.0tr36fp/8
title: Allele frequency data

description: This compressed directory contains the allele frequency estimates for the L11 and L14 lines, sublines and generations. There is one file per line/subline/generation. Each file has one row per locus (21,342 rows), with posterior means, medians and 95% ETPIs for the non-reference allele frequency at each locus.
DOI: 10.5061/dryad.0tr36fp/9
title: Genotype data

description: This compressed directory contains genotype estimates for L11 and L14. There is one file per line, subline and generation. Each file has one row per individual beetle and one column per SNP locus (columns are comma-separated). Genotype estimates given the number of non-reference alleles but are the mean of the posterior and thus not constrained to be integer valued.
DOI: 10.5061/dryad.10m1m8v/1
title: data_ms_Castaneda_et al_JEB_2019

description: File contains data of thermal preference, heat knockdown temperature and heat knockdown time for 60 half/full-sib families.
DOI: 10.5061/dryad.15nd8v3/1
title: Marisa cornuarietis genome v2.0

description: Assembled genome and annotation (GFF, transcripts and protein sequence)
DOI: 10.5061/dryad.15nd8v3/2
title: Lanistes nyassanus genome_v1.0

description: Assembled genome and annotation (GFF, transcripts and protein sequence)
DOI: 10.5061/dryad.15nd8v3/3
title: Pomacea maculata genome_v1.0

description: Assembled genome and annotation (GFF, transcripts and protein sequence)
DOI: 10.5061/dryad.15nd8v3/4
title: Pomacea canaliculata genome_v1.5

description: Assembled genome and annotation (GFF, transcripts and protein sequence)
DOI: 10.5061/dryad.1f62752/1
title: matrix
DOI: 10.5061/dryad.1k23gg6/1
title: Supplementary file
DOI: 10.5061/dryad.3g87c35/1
title: Flexible Gaze Study 1 (Bettle & Rosati)

description: Trial data from Study 1 (overhead barrier). Key for variable codes included as a separate tab in the file.
DOI: 10.5061/dryad.45j0r70/22
title: W2_IgM_R2.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by two rounds of selection using HIV WITO SOSIP. Immunoglobulin heavy chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 2 (R2)
DOI: 10.5061/dryad.45j0r70/23
title: W2_LLC_R1.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by two rounds of selection using HIV WITO SOSIP. Immunoglobulin lambda light chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 1 (R1)
DOI: 10.5061/dryad.45j0r70/24
title: W2_LLC_R2.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by two rounds of selection using HIV WITO SOSIP. Immunoglobulin lambda light chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 2 (R2)
DOI: 10.5061/dryad.45j0r70/25
title: W3_IgM__R1.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by three rounds of selection using HIV WITO SOSIP. Immunoglobulin heavy chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 1 (R1)
DOI: 10.5061/dryad.45j0r70/26
title: W3_IgM_R2.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by three rounds of selection using HIV WITO SOSIP. Immunoglobulin heavy chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 2 (R2)
DOI: 10.5061/dryad.45j0r70/27
title: W3_LLC_R1.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by three rounds of selection using HIV WITO SOSIP. Immunoglobulin lambda light chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 1 (R1)
DOI: 10.5061/dryad.45j0r70/28
title: W3_LLC_R2.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by three rounds of selection using HIV WITO SOSIP. Immunoglobulin heavy chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 2 (R2)
DOI: 10.5061/dryad.45j0r70/29
title: M3_RACE_R1.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by three rounds of selection using HIV WITO SOSIP. Immunoglobulin heavy and light chain variable regions amplified from cDNA made by RACE with barcoded 5' template switch adapters.  NEBnext amplicon sequenced using 400x100 paired end reads on the Illumina MiSeq. This is read 1 (R1)
DOI: 10.5061/dryad.45j0r70/30
title: M3_RACE_R2.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by three rounds of selection using HIV WITO SOSIP. Immunoglobulin heavy and light chain variable regions amplified from cDNA made by RACE with barcoded 5' template switch adapters.  NEBnext amplicon sequenced using 400x100 paired end reads on the Illumina MiSeq. This is read 2 (R2)
DOI: 10.5061/dryad.4g60032/1
title: Numerical data for Nassir et al, 2019

description: This file contains all numerical data for the plots described in the manuscript, Nassir et al., 2019. Numerical data for each figure is represented in each sheet.
DOI: 10.5061/dryad.4g60032/2
title: Numerical values for supplementary info
DOI: 10.5061/dryad.4g60032/3
title: tert sequence used for SMART analysis and structure prediction
DOI: 10.5061/dryad.4g60032/4
title: sequences used for phylogenetic tree construction
DOI: 10.5061/dryad.4rn1q84/1
title: AAC_branchrate estimate_chloroplast168

description: A fasta files containing concatenated chloroplast genes
DOI: 10.5061/dryad.4rn1q84/2
title: estimatingtimetocoalescence

description: An .xlsx file containing the data and calculations used for building the AAC curves presented in the mansucript
DOI: 10.5061/dryad.4rn1q84/3
title: simulations

description: Several files containing code and data for simulations for assemblage accumulation curves. readme file included in the zip folder
DOI: 10.5061/dryad.5b2k785/1
title: EvasteriasPisasterSurvey_Table_2_Fig_1_data

description: Long term Evasterias and Pisaster population data in Burrard Inlet, British Columbia, Canada. Percent of maximum abundance (denoted as “percent_max”) for each species and proportion of each species within the sea star community (denoted as “prop_sp”), during winter surveys from 2008 to 2017. Each survey’s percent of maximum abundance was calculated using the maximum abundance recorded for that site during our surveys from 2008 to 2017. Data are split into “pre” and “post” estimated time of outbreak of wasting disease, n = 9 surveys for years before wasting and n = 40 surveys for years after wasting. Surveys are from 5 sites, and estimates of area surveyed at each site are provided. Salinity is opportunistically reported.
DOI: 10.5061/dryad.5b2k785/2
title: Table3_Fig_2_data

description: Breakdown of disease progression in Evasterias and Pisaster over 28 days, in terms of number of asymptomatic (“num_healthy”) and the number of surviving individuals remaining in a tank “(num_alive”), after experimental exposure to conspecifics with signs of SSWD. “Day” indicates the duration of experiment and “tank” indicates the replicate tanks of initially uninfected sea stars. “Census_sick” and “census_dead” indicates a binary assignment of 0 or 1, where 0 denotes more than half the population of 5 sea stars is healthy/alive and 1 denotes more than half the population is sick/dead. See supplement S1.2 for more details on the methods of the experiments.
DOI: 10.5061/dryad.5b2k785/3
title: TableS3_FigS3_data

description: Mean percent change in wet weight (grams) across competition treatments, from all three experiment rounds. Competition treatments are labeled by the number of sea stars held in a tank, and of what species. Evasterias is abbreviated with “Eva” and Pisaster is abbreviated with “Pi”. The interspecific treatment for Evasterias response was “Eva (2 Eva + 2 Pi)” and for Pisaster response was “Pi (2 Eva + 2 Pi)”. Each treatment was replicated three times per experiment (denoted as “tank” number), with the exception of experiment three, where the interspecific treatment was replicated four times, for a total of 9 replications and 10 replications respectively across all three experiments. Sample size varied per treatment as some sea stars developed signs of SSWD and thus were removed and replaced with uninfected sea stars. Replacement sea star weights were not included in the data set or growth analysis. For more details on the methods see supplement section S1.3.
DOI: 10.5061/dryad.5b2k785/4
title: Fig_S4_data

description: Seasonal abundance data for Pisaster and Evasterias for April 2016 to March 2017. Mean percent of maximum abundance (denoted as “percent_max”) and mean proportion of species in community (denoted as “prop_sp”), over the months of one year. Each survey’s percent of maximum abundance was calculated using the maximum abundance recorded for that site during our surveys in 2016/2017.Surveys are from 5 sites, and estimates of area surveyed at each site are provided. Salinity is opportunistically reported. See supplement section S1.1 for more details on the methods.
DOI: 10.5061/dryad.79n5686/4
title: Survivorship, mass change, and infection loads

description: Included in the spreadsheet are: 1) survival data, initial body mass, infection intensity, time range of L. caerulea; 2) body mass change, and infection intensity of Korean species (B. gargarizans, B. orientalis, H. japonica); 3) body mass change in L. caerulea (mass after infection, measured at the conclusion of the experiment or when the individual died).
DOI: 10.5061/dryad.833qr19/1
title: Stress imprinting_data

description: Data of ROS, osmolytes and phytohormones used in this manuscript
DOI: 10.5061/dryad.bd08ft6.1
title: Data from: Speed-mediated properties of schooling
DOI: 10.5061/dryad.bd08ft6.1/10.1
title: MD Trial Excerpt
DOI: 10.5061/dryad.bd08ft6.1/8.1
title: GC Trial Excerpt
DOI: 10.5061/dryad.bd08ft6.1/9.1
title: SC Trial Excerpt
DOI: 10.5061/dryad.bd08ft6.2/10.2
title: MD Trial Excerpt
DOI: 10.5061/dryad.bd08ft6.2/5.2
title: BN Trial Excerpt
DOI: 10.5061/dryad.bd08ft6.2/8.2
title: GC Trial Excerpt
DOI: 10.5061/dryad.bd08ft6.2/9.2
title: SC Trial Excerpt
DOI: 10.5061/dryad.fq5p33c/1
title: Expe1

description: Experiment 1. Data on vertical re-distribution of artificial seeds buried in the soil at three depths.
DOI: 10.15156/bio/sh1260658.08fu
title: SH1260658.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1260659.08fu
title: SH1260659.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1260660.08fu
title: SH1260660.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1260661.08fu
title: SH1260661.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1260662.08fu
title: SH1260662.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1260663.08fu
title: SH1260663.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25549/one-ouc16651113
title: Harrison M. S., letters (1961-1985)

description: Harrison M. S., letters, correspondence with Dorr Legg about the ONE Annual Meeting, goals for the organization, and starting a group in Toronto (CHAT) (1961-1985)