cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.2pq32/1
title: FKW genotypes for Dryad

description: Nuclear genotype data for false killer whales.  Genotypes are from 16 nuclear microsatellite loci.  AnimalID is the identifier from the SWFSC Tissue Archive.  The column Stratum specifies the way in which samples were stratified in Martien et al., 2014, Journal of Heredity.  Abbreviations are CNP=Central North Pacific, ETP=Eastern Tropical Pacific, MHI=Main Hawaiian Islands, NWHI=Northwest Hawaiian Islands
DOI: 10.5061/dryad.4f2t0/1
title: Aggression Data

description: aggression by mares during suckling; data collected in the field; Microsoft Excel; MareCat.=mare category; FoalCat=foal category; TOD=time of day; em=early morning; lm=late morning; ea=early afternoon; la=late afternoon; TotAgg=total number of aggressive acts by mares during suckling.
DOI: 10.5061/dryad.4f2t0/2
title: Contact Data

description: contact maintenance between mares and foals; data collected in the field; Microsoft Excel; foalcat=foal category;perc.app=percent of movements that were approaches by the foals; perc.leave=percent of movements that were leaves by the foals; diff.percapp.percleave=%approaches-%leaves by the foals
DOI: 10.5061/dryad.4f2t0/3
title: Distance Data

description: distance between mares and foals; data collected in the field, Microsoft Excel; MareCat=mare category; FoalCat=foal category; TOD=time of day; EM=early morning; LM=late morning; EA=early afternoon; LA=late afternoon; Distmeters=distance between mares and foals in meters.
DOI: 10.5061/dryad.4f2t0/4
title: Intake Rate Data

description: intake rate (suckling bouts/hour*suckling bout duration) by foals; data collected in the field; Microsoft Excel; MareCat=mare category; FoalCat=foal category; SUEM=number of suckling bouts in the early morning; SULM=number of suckling bouts in the late morning; SUEA=number of suckling bouts in the early afternoon; SULA=number of suckling bouts in the late morning; TotSU=total number of suckling bouts; TotTime Hrs= total hours foals were watched; su.per.hr=suckling bouts per hour; sec.per.bout=duration of bouts in seconds; su.hr.sec.bout=suckles/hour * seconds/bout.
DOI: 10.5061/dryad.4f2t0/5
title: Suckling Termination Data

description: termination of suckling by the mares; data collected in the field; Microsoft Excel; TOD=time of day; em=early morning; lm=late morning; ea=early afternoon; la=late afternoon; Term=terminator of suckling; m=mare; f=foal; Termdum=dummy variable for terminator of suckling; 1=mare; 0=foal.
DOI: 10.5061/dryad.4f2t0/6
title: Weather Data

description: temperature and precipitation data for 1995 and 1996; data collected from National Climate Data Center. 2009. (accessed August 17, 2009), http://www.ncdc.noaa.gov/oa/climate/climatedata.html#monthly; Microsoft Excel; T=temperature; max=maximum; min=minimum; sumprcp=sum precipitation.
DOI: 10.5061/dryad.4kp4r/1
title: Supplementary Figure 1 (Domingo et al.)
DOI: 10.5061/dryad.4kp4r/10
title: Supplementary Table 7 (Domingo et al.)
DOI: 10.5061/dryad.4kp4r/11
title: Supplementary Table 8 (Domingo et al.)
DOI: 10.5061/dryad.4kp4r/12
title: Supplementary Table 9 (Domingo et al.)
DOI: 10.5061/dryad.566n8/5
title: List of individuals

description: List of individuals and their Genbank accession number on each loci
DOI: 10.5061/dryad.566n8/6
title: IMa2 input file for 3 P. densata groups

description: Input file of IMa2 used in multipopulation analyses for 3 P.densata groups
DOI: 10.5061/dryad.72s5k/1
title: Wheeldon et al ECE3_693 Autosomal Microsatellite Data

description: Autosomal microsatellite genotypes of historical (pop 1) and contemporary (pop 2) coyotes from southeastern Ontario, eastern wolves (pop 3) from Algonquin Provincial Park, gray wolves (pop 4) from northeastern Ontario, and domestic dogs (pop 5).
DOI: 10.5061/dryad.73b8m/1
title: Dung beetle preference

description: The first excel sheet ("Callibration beetle_weight") contains a table with numbers of dung beetles and their corresponding weights. The second excel sheet ("Dung beetle preference study") contains a table describing the number of dung beetles caught after 12, 24 or 36 hours with dung of different herbivore species. In the third excel sheet ("Dung watercontent") we calculated the water content of dung from different herbivore species: "el" is elephant, "wl" is wildebeest, "zb" is zebra and "bf" is buffalo.
DOI: 10.5061/dryad.73b8m/2
title: Dung decomposition experiment

description: The first excel sheet ("all data") is an overview of the dung decomposition experiment containing the relative weight and nutrient (C, N and P) loss together with C, N and P release rates of dung from different herbviore species ("bf" is buffalo, "gf" is giraffe, "rb" is reedbuck, "wb" is waterbuck, "wh" is warthog and "wl" is wildebeest) collected after 41 or 167 days. Dung was placed in dung bags with a fine (mesh.size =1) or coarse (mesh.size = 2) mesh, whereby the latter allowed acces of macrofauna to the dung. Signs of termite and/or dung beetle attack were recorded in the "termites" and "dungbeetles" columns, which were combined to form the "soil.fauna" column. The second excel sheet ("t=0") contains a table with weight and nutrient contents of the dung at the start of the experiment.
DOI: 10.5061/dryad.73b8m/3
title: Dung beetle experiment

description: First excel sheet ("dungbeetle cages") is an overview table of relative biomass loss and C, N and P release rates from dung undergoing different dung beetle and crushing treatments: "nodb.nomash" is no dung beeltes + not crushed, "nodb.mash" is no dung beetles + crushed, "db.nomash" is dung beetles + not crushed and "db.mash" is dung beetles + crushed. Weight and nutrients of the dung at the start of the experiment are indicated by "t0" and these are calculated from data in the second excel sheet ("t0_all species"). Weight and nutrients of the dung when collected (either at day 15, 29 or 47) are indicated by "tx".
DOI: 10.5061/dryad.77rf2/1
title: Microsatellite data

description: Microsatellite data file for genepop and structure analyses
DOI: 10.5061/dryad.77rf2/2
title: Table S1

description: Tissue samples used in this study including mtDNA lineage/clade and microsatellite cluster assignments, whether morphology was scored, and specific locality information.
DOI: 10.5061/dryad.77rf2/3
title: CHIONACTIS_mtDNA_ND1_Matrix

description: ND1 mtDNA sequence data for all samples used in this study. The sequence matrix is aligned and in nexus format.
DOI: 10.5061/dryad.7r4p9/1
title: 16S Sequences scorpions 181 bp

description: This file contains 16S sequences of 24 species of scorpions at a length of 181 basepairs.
DOI: 10.5061/dryad.7t3h6/1
title: Data File (Konstantakopoulou et al 2014)

description: Raw data file for 'A qualitative study of stakeholder views regarding participation in locally commissioned enhanced optometric services.'
DOI: 10.5061/dryad.8q6f5/1
title: dataset for the four-day pairing test

description: The dataset was created in excel. All variables included in this dataset are described in details in the associated manuscript. For binary variables, 0 indicates absence and 1 presence. "Decr" and "cont" refer to decreased and control broods respectively.
DOI: 10.5061/dryad.8q6f5/2
title: dataset for five-minute mating test

description: The dataset was created in excel. All variables included in this dataset are described in details in the associated manuscript. For binary variables, 0 indicates absence and 1 presence. "Decr" and "cont" refer to decreased and control broods respectively. missing values are indicated by "na".
DOI: 10.5061/dryad.935qb/1
title: Miller et al 2014 Paleobiology SOM and Appendices

description: Supplemental Online Materials and Appendices for "Ecological fidelity of functional traits based on species presence-absence in a modern mammalian bone assemblage (Amboseli, Kenya)."
DOI: 10.5061/dryad.b6091/1
title: Experimental and simulation data of nest-site selection by Apis mellifera

description: This zip folder contains three major sub-folders with experimental and simulation data from our study. The folder "RateofNewDancers" contains a summary spreadsheet of our field observations of new dancers appearing on the surface of 8 small and 8 large artificial swarms of Apis mellifera, along with reduced data and the MATLAB code we used for analysis. Swarm experiments were performed between the 28th of September 2009 and the 20th of January 2010 at the University of Sydney's Crommelin Field Station, Pearl Beach, New South Wales, Australia (Latitude: 33.55 degrees South, Longitude: 151.30 degrees East). The folder "VideoAnalysisofWaggleDances" contains the raw data files generated by our MATLAB programme to aid in the analysis of waggle dances on two small and one large experimental swarm. Also provided in "VideoAnalysisofWaggleDances" are MATLAB files to analyse the distinct sites danced for by bees in each of the three swarms. "ExampleSimulationCodesandData" contains the MATLAB codes used to perform all the individual-based simulations described in our main manuscript and sections S5-S7 of our online supplementary material. Also contained in "ExampleSimulationCodesandData" is the output data from all the simulations and the MATLAB codes used to analyse that data.
DOI: 10.5061/dryad.bm558/1
title: Visitation and behavioral data to artificial floral arrays

description: These data were collected in the field and are for three separate types of artificial floral arrays. Each type of array is on its own datasheet ('tab').  Column header descriptions are denoted in the first tab.
DOI: 10.5061/dryad.c3287/2
title: Hargreaves etal 2013 metaanalysis bioliography

description: Full citation details for all studies included in meta-analysis
DOI: 10.5061/dryad.cd48f/1
title: List of Microsatellite alleles

description: The microsatellite allele sizes (in baseapirs, ?=missing data) are listed under respective loci for all isolates of Sclerotinia sclerotiorum.
DOI: 10.5061/dryad.cn667/1
title: raw_data

description: This is the raw data associated with the the paper accepted in Proceedings of Royal Society: Biological Sciences, entitled; "Food vibrations: Asian spice sets lips trembling". It is a human psychophysical data about tactile frequency perception.Please see the README.txt for the detail of the data structure, as well as the summary of the data acquisition.
DOI: 10.5061/dryad.ct74m/1
title: Genotype data for Barnacle paternity study of Pollicipes elegans-- BMC Evol. Bio

description: This spreadsheet contains two tabs. The first contains the larval genotype data for each of the 14 broods (C1- C22) used for the paternity analyses. The mother's genotype is the first row of each brood's dataset. Each subsequent row (emb1-embX) is the genotype of each embryo sampled for that brood. Pole1-Pole44 are the microsatellite markers used. The Second tab contains the adult genotype data from 3 barnacle aggregations used for analysis of relatedness and fine-scale population structure. Data are arranged by aggregation (1-3) for 8 microsatellite markers.
DOI: 10.5061/dryad.f3s8n/1
title: Offspring survival and body weight
DOI: 10.5061/dryad.gf680/1
title: Fernandez-Lopez_&_Pavia_measurements
DOI: 10.5061/dryad.h3k4n/1
title: Tissue mix DNA amplicon pool (.fastq)

description: This file contains the DNA sequences and quality scores that resulted from Ion Torrent amplicon sequencing of a fish tissue mixture that matched the seal diet in the study. See manuscript text for details.
DOI: 10.5061/dryad.h3k4n/2
title: Seal scat DNA amplicon pool (.fastq)

description: This file contains the DNA sequences and quality scores that resulted from Ion Torrent amplicon sequencing of 48 individually amplified seal scats from the feeding trial. The harbour seals were fed: capelin (Mallotus villosus) (40%), Pacific herring (Clupea pallasii) (30%), chub mackerel (Scomber japonicus) (15%), and market squid (Loligo opalescens) (15%). See text for details.
DOI: 10.5061/dryad.h3k4n/3
title: Figure_Data

description: Data used to create figures 2-5. See Readme file for details
DOI: 10.5061/dryad.h97pk/1
title: R scripts

description: R scripts to perform the analyses performed in the paper.
DOI: 10.5061/dryad.h97pk/2
title: *Beast analysis xml file

description: xml file used to perform the species tree analysis.
DOI: 10.5061/dryad.h97pk/3
title: bpp Species Delim Control File

description: control file used to perform the BP&P species delimitation analysis.
DOI: 10.5061/dryad.h97pk/4
title: Supplementary figures

description: Supplementary figures 1, 2, and 3.
DOI: 10.5061/dryad.j8b02/1
title: Notonectid dispersal data

description: This data was collected in the field at the Koffler Scientific Reserve in Ontario, Canada. Column headings: round - the number of notonectids in each tank were counted twice in two rounds (first and last rounds); tank# - there were 30 tanks in the experiment, each tank appears twice in the datasheet, once in the first round once in the last round; block - the 30 tanks were split into three time blocks (1, 2, and 3); fish treatment - tanks received no fish (no) or one caged fish (yes); notonectid density - categorical density treatment (low, medium, or high); initial #notonectids - number of notonectids initially placed in tank, corresponds to notonectid density treatment (low = 19, medium = 38, high = 60); total #dead notonectids - total number of notonectids found dead in given tank as of the given round; remaining #notonectids - total number of living notonectids found in given tank in given round
DOI: 10.5061/dryad.jp8r1/10
title: Lemmus.complete.8.9.result.BEAST

description: Tree file obtained from BEAST and summarised in TreeAnnotator. For the complete dataset using a mutation rate of 8.9 % per million years
DOI: 10.5061/dryad.jp8r1/11
title: Lemmus.complete.30.inputBEAST

description: Input file to BEAST, for analysing the complete dataset using a mutation rate of 30 % per million years
DOI: 10.5061/dryad.jp8r1/12
title: Lemmus.complete.30.result.BEAST

description: Tree file obtained from BEAST and summarised in TreeAnnotator. For the complete dataset using a mutation rate of 30 % per million years
DOI: 10.5061/dryad.jp8r1/13
title: Lemmus.complete.50.inputBEAST

description: Input file to BEAST, for analysing the complete dataset using a mutation rate of 50 % per million years
DOI: 10.5061/dryad.jp8r1/14
title: Lemmus.complete.50.result.BEAST

description: Tree file obtained from BEAST and summarised in TreeAnnotator. For the complete dataset using a mutation rate of 50 % per million years
DOI: 10.5061/dryad.jp8r1/6
title: Lemmus.partial.30.result.BEAST

description: Tree file obtained from BEAST and summarised in TreeAnnotator. For the partial dataset using a mutation rate of 30 % per million years
DOI: 10.5061/dryad.jp8r1/7
title: Lemmus.partial.50.inputBEAST

description: Input file to BEAST, for analysing the partial dataset using a mutation rate of 50 % per million years
DOI: 10.5061/dryad.jp8r1/8
title: Lemmus.partial.50.result.BEAST

description: Tree file obtained from BEAST and summarised in TreeAnnotator. For the partial dataset using a mutation rate of 50 % per million years
DOI: 10.5061/dryad.jp8r1/9
title: Lemmus.complete.8.9.inputBEAST

description: Input file to BEAST, for analysing the complete dataset using a mutation rate of 8.9 % per million years
DOI: 10.5061/dryad.k1t1f/4
title: ReadMe_Ruhfeletal_Viridiplantae
DOI: 10.5061/dryad.k8m7b/1
title: Observed number of fruits

description: Data were collected in the field
DOI: 10.5061/dryad.n4s1r/1
title: Genotypes

description: This file contains genotypes at 10 microsatellite loci for Chinook salmon collected in the fish passage facility at Landsburg Diversion Dam, Cedar River, WA, USA. Values of "0" indicated no observation at the given locus for that individual.
DOI: 10.5061/dryad.n4s1r/2
title: Phenotypes

description: This file contains the non-genetic data on each individual in the study. "Adipose" refers to the presence or absence of the adipose fin; salmon hatcheries in this region generally remove this fin prior to release. Thus "Absent" indicates hatchery origin.
DOI: 10.5061/dryad.n8s6t/1
title: Bombyx_mandarina

description: Confocal microscopic image of the antennal lobe in the brain of male Bombyx mandarina
DOI: 10.5061/dryad.n8s6t/2
title: Bombyx_mori

description: Confocal microscopic image of the antennal lobe in the brain of male Bombyx mori
DOI: 10.5061/dryad.nh8f0/1
title: DATASETS
DOI: 10.5061/dryad.qv633/1
title: split

description: A perl script that takes a fastq file obtained by bidirectional sequencing and separates the forward and reverse reads in two different files.
DOI: 10.5061/dryad.tf25c/10
title: Fig4_16(PCG12RT)

description: Add new mitochondrial genome of Paraplea frontalis in Figure 4
DOI: 10.5061/dryad.tf25c/9
title: Fig4_16(PCG123RT)

description: Add new mitochondrial genome of Paraplea frontalis in Figure 4
DOI: 10.5061/dryad.tq34k/1
title: mutation rates data

description: Data collected in the lab and analysed using R software. Malthusian parameters used to describe growth rates in competition experiments.
DOI: 10.5061/dryad.0dm16/1
title: Bromelioideae complete alignment

description: Combined plastid and nuclear alignment of Bromelioideae (+ outgroups) in Nexus format with gene partitions defined for MrBayes
DOI: 10.5061/dryad.0dm16/2
title: Bromelioideae 100 BEAST trees

description: Random sample of 100 trees from the BEAST relaxed clock analyses (log-normal rates, Yule prior)
DOI: 10.5061/dryad.0q08k/1
title: Tables S2-S4. Output from Lagrange analysis.

description: Tables include detailed results, including all possible reconstructions, from the three separate biogeographical analyses using Lagrange.
DOI: 10.5061/dryad.0q08k/2
title: Combined dataset

description: The combined (rbcL, rbcL-accD IGS, rbcL-atpB IGS, trnGR, and trnLF) dataset as nexus file. Data partitions and excluded characters are listed.
DOI: 10.5061/dryad.22d26/1
title: SystBiol_TreeData.tar
DOI: 10.5061/dryad.22d26/2
title: Supplementary Materials

description: Supplementary materials
DOI: 10.5061/dryad.3n4h2/1
title: Koala habitat map and road traffic volumes, Port Stephens, Australia

description: This zipped data file contains two ESRI spatial layers: (1) a raster layer of koala habitat in Port Stephens, Australia, and (2) a shapefile of road trafiic volumes (axle-pairs per day) on major roads in Port Stephens, Australia.
DOI: 10.5061/dryad.4kp4r/13
title: Supplementary Table 10 (Domingo et al.)
DOI: 10.5061/dryad.4kp4r/14
title: Supplementary Text (Domingo et al.)
DOI: 10.5061/dryad.4kp4r/2
title: Supplementary Figure 2 (Domingo et al.)
DOI: 10.5061/dryad.4kp4r/3
title: Supplementary Figure 3 (Domingo et al.)
DOI: 10.5061/dryad.4kp4r/4
title: Supplementary Table 1 (Domingo et al.)
DOI: 10.5061/dryad.4kp4r/5
title: Supplementary Table 2 (Domingo et al.)
DOI: 10.5061/dryad.4kp4r/6
title: Supplementary Table 3 (Domingo et al.)
DOI: 10.5061/dryad.4kp4r/7
title: Supplementary Table 4 (Domingo et al.)
DOI: 10.5061/dryad.58ss8/1
title: hASTV-S

description: Human Astrovirus structural gene
DOI: 10.5061/dryad.58ss8/2
title: HAV-S

description: Hepatitis A virus - structural gene
DOI: 10.5061/dryad.58ss8/4
title: BEFV-S

description: Bovine ephemeral fever virus
DOI: 10.5061/dryad.690jk/1
title: Fusinatto et al.CrypticGeneticDiversityEuparkerella

description: Folder with all data and main input files used in this manuscript and a read-me file with instructions
DOI: 10.5061/dryad.73b8m/4
title: Dung deposition per collection time

description: This excel file consists of several sheets representing different dung collection times (time0-time13). The sheets describe at which site (MAC = Mkwaja area and SAC = Saadani area) dung was collected (in biomass) and which herbivore species deposited that dung. Time0, time6 and time10 were collection times at the start of a field season in which the dungplot was cleared; these data were not taken into account for the dung deposition analyses.
DOI: 10.5061/dryad.73b8m/5
title: Dung deposition per guild

description: In this excel file the dung deposition data of "Dung deposition per collection time.xls" are combined into dung biomass deposited per herbivore feeding strategy and digestive physiology group (noted as column "guild" in the file): "rum.br" is ruminant browser, "nonrum.gr" is non-ruminant grazer and "rum.gr" is ruminant grazer. The dung biomass deposition is combined with the N and P contents of dung in dry and wet periods to estimate annual N and P inputs through dung.
DOI: 10.5061/dryad.73b8m/6
title: Dung nutrient overview

description: An overview of dung nutrient concentrations (C, N and P) and ratios of the most common herbivore species of Saadani National Park collected on several occasions during two years. Dung was collected for several experiments (under column "data": see excel file for abbreviations of experiments) and in two areas (under column "location": "SA" is Saadani area, "MK" is Mkwaja area).
DOI: 10.5061/dryad.73b8m/7
title: Resin bag experiment

description: Calculated adsorbed N and P values of resin bags placed for 34 days in pots containing only soil, soil and dung, or soil, dung and dung beetles (see column "treatment").
DOI: 10.5061/dryad.7h6p6/1
title: Lake Paijanne TP_TN_data Tolonen et al. Fig_2 & 3

description: This Excel-table contains data used to result the figures 2 and 3 of the paper: Tolonen et al. 2014. The relevance of ecological status to ecosystem functions and services in a large boreal lake. Journal of Applied Ecology. doi: 10.1111/1365-2664.12245.
DOI: 10.5061/dryad.7h6p6/2
title: Lake Paijanne loading Tolonen et al. Fig. 1

description: Nutrient and organic loading in northern and central Lake Paijanne, Finland from 1960 to 2012.
DOI: 10.5061/dryad.7h6p6/3
title: Lake Paijanne oxygen data Tolonen et al. Fig. 4

description: Oxygen concentrations in the sub-basins of Lake Paijanne from 1960s to 2012.
DOI: 10.5061/dryad.7h6p6/4
title: Lake Paijanne ecologica quality ratios Tolonen et al. Fig. 5

description: Temporal variation of ecological status (1965-2012), expressed as ecological quality ratios, of Lake Paijanne. Ecological quality ratios given separately for different quality elements: water quality, phytoplankton and profundal macroinvertebrates as well as for combined ecological status.
DOI: 10.5061/dryad.7h6p6/5
title: EQR vs_ecosystem functions & services Tolonen et al. Fig. 6

description: Data used to draw figure 6 in Tolonen et al. (2014) i.e. combined ecological status in relation to species diversity of a) phytoplankton, b) zooplankton and c) macroinvertebrates, ecosystem functions parameters including d) phytoplankton, e) bacterial and f) zooplankton production, and g) trophic transfer efficiency of phytoplankton to zooplankton production, and ecosystem services related to fisheries h) CPUE gill-net catch of local fishermen and i) density of coregonid larvae.
DOI: 10.5061/dryad.82th6/7
title: 18S-16S rDNA clones from bioaerosol sample G6 (S6F3)

description: 18S-16S rDNA clones from a maize pollen enriched bioaerosol sample collected with a pollen trap (PMF/Sigma 2, TIEM Technique, Germany) in a coexistence field trial in the Ghent area, Belgium. Sequences obtained from sample G6. Primers used: 515f 5’-GTGCCAGCMGCCGCGGTAA-3’ (M=A-C) 1391r 5’-GACGGGCGGTGWGTRCA-3’(W=A-T; R=A-G).
DOI: 10.5061/dryad.ds304/1
title: SNP Genotypes and geographic data collected from chum salmon populations in Alaska

description: This data file contains the following data: 1) SNP genotypes for each individual fish, 2) geographic and temporal information associated with each collection, 3) population genetic indices and citation data for each SNP genotyped, 4) waterway distance between each collection site, as calculated by a least-cost path analysis in ARC-GIS.
DOI: 10.5061/dryad.gd031k26/10
title: Supplemental Dataset 11
DOI: 10.5061/dryad.gd031k26/11
title: Supplemental Dataset 12
DOI: 10.5061/dryad.gd031k26/9
title: Supplemental Dataset 10
DOI: 10.5061/dryad.h0228/6
title: DarwinTunes-medley-at-600-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.h97pk/5
title: Supplementary table 1

description: Table S1