cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34808/nfw8-tv18
title: Nontoxic multinodular goitre - Female, 41 - Tissue image [5290730025526061]

description: This is the histopathological image of THYROID GLAND tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 41Clinical description: Numerous nodules of thyroid gland.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter IV - Endocrine, nutritional and metabolic diseasesDiagnosis: Nontoxic multinodular goitreResult of the histopathological examination: Multinodular goitre.Sample:Material: FFPECollecting method: Surgical specimenTopography: THYROID AND OTHER ENDOCRINE GLANDSOrgan: THYROID GLANDTissue: Thyroid glandType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/63fv-6n48
title: B-cell chronic lymphocytic leukemia/small lymphocytic lymphoma - Female, 69 - Tissue image [529073002553821]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 69Clinical description: Enlarged cervical lymph nodes. Suspicion of lymphoma.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: LYMPHOID LEUKEMIAS (C42.1)Diagnosis: B-cell chronic lymphocytic leukemia/small lymphocytic lymphomaResult of the histopathological examination: SLL/CLL-B: CD20+, CD23+, CD5+, CD3-, BCL2+, CyclinD1-, Ki-67 20%.Sample:Material: FFPECollecting method: Excision of lesionsTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Cervical lymph nodeType of staining: positive/IHCStaining: Not applicableAntibody: CD 5Technology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/drc2-eb49
title: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS, Parametrium - Female, 60 - Tissue image [5290730025502101]

description: This is the histopathological image of OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 60Clinical description: Polyp of the endometrium.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: The parametrium is free of tumor.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANSTissue: ParametriumType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/rt14-bx74
title: LYMPH NODES, Obturator lymph node - Female, 60 - Tissue image [5290730025505681]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 60Clinical description: Polyp of the endometrium.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: The lymph node is free of metastasis.Sample:Material: FFPECollecting method: Surgical specimenTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Obturator lymph nodeType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/hwsn-3w85
title: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS, Parametrium - Female, 60 - Tissue image [5290730025502741]

description: This is the histopathological image of OTHER AN UNSPECIFIED FEMALE GENITAL ORGANS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 60Clinical description: Polyp of the endometrium.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: The parametrium is free of tumor.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OTHER AN UNSPECIFIED FEMALE GENITAL ORGANSTissue: ParametriumType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/zsxz-yy04
title: Clear cell renal cell carcinoma, NOS - Female, 64 - Tissue image [5290730025517441]

description: This is the histopathological image of KIDNEY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 64Clinical description: 1,6 x 1,3 x 1,7 cm tumor of right kidney.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Clear cell renal cell carcinoma, NOSResult of the histopathological examination: Clear cell renal cell carcinoma of kidney (G2 WHO/ISUP Nuclear Grading System ).Sample:Material: FFPECollecting method: Surgical specimenTopography: URINARY TRACTOrgan: KIDNEYTissue: Kidney, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/k0vq-nz06
title: Serous cystadenoma, NOS - Female, 58 - Tissue image [529073002551551]

description: This is the histopathological image of OVARY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 58Clinical description: Tumor of left ovary.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: CYSTIC, MUCINOUS AND SEROUS NEOPLASMSDiagnosis: Serous cystadenoma, NOSResult of the histopathological examination: Serous cystadenoma of ovary.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OVARYTissue: OvaryType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/s00w-ba58
title: Mucoepidermoid carcinoma - Male, 25 - Tissue image [5290730025514531]

description: This is the histopathological image of PAROTID GLANID tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 25Clinical description: Tumor of left parotid gland. 25 x 15 mm heterogenous solid tumor on ultrasound.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: MUCOEPIDERMOID NEOPLASMSDiagnosis: Mucoepidermoid carcinomaResult of the histopathological examination: Mucoepidermoid carcinoma of salivary gland (intermediate-grade). Vascular invasion is present (LVI+). CKAE1/AE3+, CK7+, GATA3+, CK5/6+, SOX-10-, S100-, GFAP-, MUC5+, p40+, Ki-67 10%.Sample:Material: FFPECollecting method: Surgical specimenTopography: LIP, ORAL CAVITY AND PHARYNXOrgan: PAROTID GLANIDTissue: Parotid glandType of staining: positive/IHCStaining: Not applicableAntibody: CK 7Technology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/cq1f-4t22
title: LYMPH NODES, Obturator lymph node - Female, 60 - Tissue image [5290730025509071]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 60Clinical description: Polyp of the endometrium.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: The lymph node is free of metastasis.Sample:Material: FFPECollecting method: Surgical specimenTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Obturator lymph nodeType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/r620-ck03
title: Papillary renal cell carcinoma - Male, 51 - Tissue image [5290730025506781]

description: This is the histopathological image of KIDNEY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 51Clinical description: Tumor of right kidney.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Papillary renal cell carcinomaResult of the histopathological examination: Papillary renal cell carcinoma of kidney (type 1).Sample:Material: FFPECollecting method: Surgical specimenTopography: URINARY TRACTOrgan: KIDNEYTissue: Kidney, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/46az-np46
title: LYMPH NODES, Obturator lymph node - Female, 60 - Tissue image [5290730025506571]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 60Clinical description: Polyp of the endometrium.Gender: FemaleDiagnosis:Classification: HealthyClassification code: Diagnosis: Result of the histopathological examination: The lymph node is free of metastasis.Sample:Material: FFPECollecting method: Surgical specimenTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Obturator lymph nodeType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/kr6c-av29
title: Nontoxic multinodular goitre - Female, 41 - Tissue image [5290730025526141]

description: This is the histopathological image of THYROID GLAND tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 41Clinical description: Numerous nodules of thyroid gland.Gender: FemaleDiagnosis:Classification: ICD-10_10-20Classification code: Chapter IV - Endocrine, nutritional and metabolic diseasesDiagnosis: Nontoxic multinodular goitreResult of the histopathological examination: Multinodular goitre.Sample:Material: FFPECollecting method: Surgical specimenTopography: THYROID AND OTHER ENDOCRINE GLANDSOrgan: THYROID GLANDTissue: Thyroid glandType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/zq84-cj97
title: Papillary renal cell carcinoma - Male, 51 - Tissue image [5290730025509471]

description: This is the histopathological image of KIDNEY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 1000 slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 51Clinical description: Tumor of right kidney.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Papillary renal cell carcinomaResult of the histopathological examination: Papillary renal cell carcinoma of kidney (type 1).Sample:Material: FFPECollecting method: Surgical specimenTopography: URINARY TRACTOrgan: KIDNEYTissue: Kidney, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 1000Lens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.6084/m9.figshare.17703164.v1
title: A multiple predictive tool approach for phenotypic and biogeographical ancestry inferences

description: Phenotypic and biogeographical ancestry predictions for 128 Canadians with various self-reported ancestries, generated using the ForenSeq™ DNA Signature Prep kit/Primer Mix B and VEROGEN’s Universal Analysis Software (UAS) v1.3, were compared to predictions derived from the ERASMUS v2.0, Snipper Application v2.5, Forensic Reference/Resource on Genetics knowledge base [FROG-kb] ©2019 and STRUCTURE v2.3.4, web tools. Performance metrics were calculated for all tools tested. The UAS v1.3 eye color predictions were determined to be accurate (91.8% for brown, 82.4% for blue) with no need to complement results with any other predictive tools. For hair color predictions, the UAS v1.3 was accurate for black (93.5%), for red (80.0%) but limited for brown (50.0%) and for blond (31.3%) using the Highest Probability Approach. The ERASMUS web tool could complement the UAS results using a revised Prediction Guide Approach. Non-admixed individuals with ancestries from Africa, East Asia or Europe were predicted with 79.7% accuracy using the UAS v1.3. Admixed individuals and those with ancestries from India, the Middle East and South America were better classified using Snipper, FROG-kb and STRUCTURE. Complementing UAS v1.3 predictions with those obtained from open access web tools thus represents a way to maximize information derivable from unknown samples.
DOI: 10.6084/m9.figshare.17703164
title: A multiple predictive tool approach for phenotypic and biogeographical ancestry inferences

description: Phenotypic and biogeographical ancestry predictions for 128 Canadians with various self-reported ancestries, generated using the ForenSeq™ DNA Signature Prep kit/Primer Mix B and VEROGEN’s Universal Analysis Software (UAS) v1.3, were compared to predictions derived from the ERASMUS v2.0, Snipper Application v2.5, Forensic Reference/Resource on Genetics knowledge base [FROG-kb] ©2019 and STRUCTURE v2.3.4, web tools. Performance metrics were calculated for all tools tested. The UAS v1.3 eye color predictions were determined to be accurate (91.8% for brown, 82.4% for blue) with no need to complement results with any other predictive tools. For hair color predictions, the UAS v1.3 was accurate for black (93.5%), for red (80.0%) but limited for brown (50.0%) and for blond (31.3%) using the Highest Probability Approach. The ERASMUS web tool could complement the UAS results using a revised Prediction Guide Approach. Non-admixed individuals with ancestries from Africa, East Asia or Europe were predicted with 79.7% accuracy using the UAS v1.3. Admixed individuals and those with ancestries from India, the Middle East and South America were better classified using Snipper, FROG-kb and STRUCTURE. Complementing UAS v1.3 predictions with those obtained from open access web tools thus represents a way to maximize information derivable from unknown samples.
DOI: 10.5281/zenodo.6591449
title: Indoor Positioning Simulation For Examination And Correction Of Occupancy Limits In Architectural Design

description: Dataset that contains the images of scenarios used for the analysis and the analysis itself.
DOI: 10.5281/zenodo.6591448
title: Indoor Positioning Simulation For Examination And Correction Of Occupancy Limits In Architectural Design

description: Dataset that contains the images of scenarios used for the analysis and the analysis itself.
DOI: 10.6084/m9.figshare.19919486.v1
title: Untitled Item

description: This is a systematic map database, including all papers reporting cyanotoxin intoxication in terrestrial wildlife.
DOI: 10.6084/m9.figshare.19919486
title: Cyanotoxin Intoxication in Terrestrial Wildlife: A Systematic Map Database

description: This is a systematic map database, including all papers reporting cyanotoxin intoxication in terrestrial wildlife.
DOI: 10.6084/m9.figshare.19919486.v2
title: Cyanotoxin Intoxication in Terrestrial Wildlife: A Systematic Map Database

description: This is a systematic map database, including all papers reporting cyanotoxin intoxication in terrestrial wildlife.
DOI: 10.34740/kaggle/dsv/3715443
title: ECB speeches etc. 1997 to 2022-05-29
DOI: 10.6069/41va-8n81
title: Iron-Regulated Assembly of the Cytosolic Iron-Sulfur Cluster Biogenesis Machinery

description: The cytosolic iron-sulfur (Fe-S) cluster assembly (CIA) pathway delivers Fe-S clusters to nuclear and cytosolic Fe-S proteins involved in essential cellular functions. Although the delivery process is regulated by the availability of iron and oxygen, it remains unclear how CIA components orchestrate the cluster transfer under varying cellular environments. Here, we utilized a targeted proteomics assay for monitoring CIA factors and substrates to characterize the CIA machinery. We find that NUBP1 (NBP35), CIAO3 (NARFL) and CIA substrates associate with NUBP2 (CFD1), a component of the CIA scaffold complex. We also show that NUBP2 weakly associates with the CIA targeting complex (MMS19, CIAO1, CIAO2B) indicating the possible existence of a higher order complex. Interactions between CIAO3 and the CIA scaffold complex are strengthened upon iron supplementation or low oxygen tension, while iron chelation and reactive oxygen species weaken CIAO3 interactions with CIA components. We further demonstrate that CIAO3 mutants defective in Fe-S cluster binding fail to integrate into the higher order complexes. However, these mutants exhibit stronger associations with CIA substrates under conditions in which the association with the CIA targeting complex is reduced suggesting that CIAO3 and CIA substrates may associate in complexes independently of the CIA targeting complex. Together, our data suggest that CIA components potentially form a metabolon whose assembly is regulated by environmental cues and requires Fe-S cluster incorporation in CIAO3. These findings provide additional evidence that the CIA pathway adapts to changes in cellular environment through complex reorganization.
DOI: 10.34740/kaggle/dsv/2648718
title: WHPA Prediction
DOI: 10.6084/m9.figshare.19919516
title: Discovering Neighbors

description: Dataset for "Discovering Neighbors"
DOI: 10.6084/m9.figshare.19919516.v1
title: Discovering Neighbors

description: Dataset for "Discovering Neighbors"
DOI: 10.5281/zenodo.6578708
title: Dataset for An Empirical Study of Hackathon Code Creation and Reuse

description: This dataset is corresponds to our extended analysis done for “The Secret Life of Hackathon Code Where does it come from and where does it go?” (https://doi.org/10.1109/MSR52588.2021.00020, pre-print at: https://arxiv.org/abs/2103.01145) and “Tracking Hackathon Code Creation and Reuse” (https://doi.org/10.1109/MSR52588.2021.00085, pre-print at: https://arxiv.org/pdf/2103.10167). The replication package including the scripts used for generating this dataset from the “World of Code” (https://worldofcode.org/) dataset is available in Github link https://github.com/woc-hack/track_hack. The dataset contains the blob hashes used in the scope of the analysis and the analysis outcome. The columns are as following <strong>DevpostID</strong>: Devpost identification for the hackathon project and it can be used to get the URL for the devpost.com website. Example DevpostID -q9nd5 can be translated to https://devpost.com/software/-q9nd5 <strong>ProjectID</strong>: The Github project name <strong>HackathonEndDate</strong>: Hackathon event end date <strong>BlobHash</strong>: The blob hash used in the analysis <strong>BeforeHackathon-DuringHackathon-AfterHackathon</strong>: This column represents if the blob was first introduced before/during/after the hackathon (1: before, 2: during, 3: after) <strong>SameAuthor-Contributor-OtherAuthor</strong>: This column represents if the blob was first created by someone in the hackathon team, or someone who was a contributor to a project in which one of the members of the hackathon project contributed to as well (contributor), or someone else outside of the hackathon team (1: Author is a hackathon team member, 2: Author Contributed before with a hackathon team member, 3: Author is not related to the hackathon team). <strong>UsedBySmallProject-UsedByMediumProject-UsedByLargeProject</strong>: This column represents if the hackathon blob is reused again after the hackathon event and what is the project size that reused the code (1: not reused, 3: reused in small project, 4: reused in medium project, 5: reused in large project)
DOI: 10.5281/zenodo.6591444
title: Hierarhical method and Dynamic Programming methods for AI-SPRINT GPU Scheduler

description: This repository includes the source code and the datasets of the Hierarchical method and the Dynamic Programming methods used to obtain the results reported in the article "Scheduling Deep Learning Jobs Training in the Cloud: Comparing Multiple Approaches". The two methods constitute a part of the GPU Scheduler developed in the context of the AI-SPRINT project.
DOI: 10.5281/zenodo.6591443
title: Hierarhical method and Dynamic Programming methods for AI-SPRINT GPU Scheduler

description: This repository includes the source code and the datasets of the Hierarchical method and the Dynamic Programming methods used to obtain the results reported in the article "Scheduling Deep Learning Jobs Training in the Cloud: Comparing Multiple Approaches". The two methods constitute a part of the GPU Scheduler developed in the context of the AI-SPRINT project.