cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6188333
title: Late Paleozoic geology of the Queensland Plateau (offshore northeastern Australia)

description: The southwestern Pacific region consists of segmented and translated continental fragments of the Gondwanan margin. Tectonic reconstructions of this region are challenged by the fact that many fragmented continental blocks are submerged and/or concealed under younger sedimentary cover. The Queensland Plateau (offshore northeastern Australia) is one such submerged continental block. We present detrital zircon geochronological and morphological data, complemented by petrographic observations, from samples obtained from the only two drill cores that penetrated the Paleozoic metasedimentary strata of the Queensland Plateau (Ocean Drilling Program leg 133, sites 824 and 825). Results provide maximum age constraints of 319.4 ± 3.5 and 298.9 ± 2.5 Ma for the time of deposition, which in conjunction with evidence for deformation, indicate that the metasedimentary successions are most likely upper Carboniferous to lower Permian. A comparison of our results with a larger dataset of detrital zircon ages from the Tasmanides suggests that the Paleozoic successions of the Queensland Plateau formed in a backarc basin that was part of the northern continuation of the New England Orogen and/or the East Australian Rift System. However, unlike most of the New England Orogen, a distinctive component of the detrital zircon age spectra of the Mossman Orogen is also recognised, suggesting the existence of a late Paleozoic drainage system that crossed the northern Tasmanides <i>en route</i> from the North Australian Craton. A distinctive shift from abraded zircon grains to grains with well-preserved morphology at <i>ca</i> 305 Ma reflects a direct drainage of first-cycle sediments, most likely from an outboard arc and/or backarc magmatism.
DOI: 10.6084/m9.figshare.6188333.v1
title: Late Paleozoic geology of the Queensland Plateau (offshore northeastern Australia)

description: The southwestern Pacific region consists of segmented and translated continental fragments of the Gondwanan margin. Tectonic reconstructions of this region are challenged by the fact that many fragmented continental blocks are submerged and/or concealed under younger sedimentary cover. The Queensland Plateau (offshore northeastern Australia) is one such submerged continental block. We present detrital zircon geochronological and morphological data, complemented by petrographic observations, from samples obtained from the only two drill cores that penetrated the Paleozoic metasedimentary strata of the Queensland Plateau (Ocean Drilling Program leg 133, sites 824 and 825). Results provide maximum age constraints of 319.4 ± 3.5 and 298.9 ± 2.5 Ma for the time of deposition, which in conjunction with evidence for deformation, indicate that the metasedimentary successions are most likely upper Carboniferous to lower Permian. A comparison of our results with a larger dataset of detrital zircon ages from the Tasmanides suggests that the Paleozoic successions of the Queensland Plateau formed in a backarc basin that was part of the northern continuation of the New England Orogen and/or the East Australian Rift System. However, unlike most of the New England Orogen, a distinctive component of the detrital zircon age spectra of the Mossman Orogen is also recognised, suggesting the existence of a late Paleozoic drainage system that crossed the northern Tasmanides <i>en route</i> from the North Australian Craton. A distinctive shift from abraded zircon grains to grains with well-preserved morphology at <i>ca</i> 305 Ma reflects a direct drainage of first-cycle sediments, most likely from an outboard arc and/or backarc magmatism.
DOI: 10.6084/m9.figshare.6188318
title: A Survey of Rabbit Handling Methods Within the United Kingdom and the Republic of Ireland

description: Rabbits are commonly kept in a variety of settings, including homes, laboratories, and veterinary clinics. Despite the popularity of keeping this prey species, little research has investigated current methods of handling. The aim of this study was to examine the experience of caregivers (owners and keepers) in using five handling methods commonly referred to in books written for companion animal (pet) owners and veterinary and/or laboratory personnel. An online survey was completed by 2644 respondents, representing all three of these groups, and breeders. Data were acquired to determine sources that participants used to gain knowledge of different handling methods, the methods they used and for what purposes they used them, and their perceptions of any associated difficulties or welfare concerns. Results indicated that participants most frequently used the method of supporting a rabbit’s body against a person’s chest, which was considered the easiest and most welfare-friendly method of the handling methods explored. “Scruffing with rear support” was the least used method and was considered to be distressing and painful for the rabbit. As rabbits are a terrestrial prey species, being picked up is likely an innately stressful experience. Additional research is encouraged to explore the experience of rabbits during handling to identify methods that can be easily used with the fewest welfare compromises.
DOI: 10.6084/m9.figshare.6188318.v1
title: A Survey of Rabbit Handling Methods Within the United Kingdom and the Republic of Ireland

description: Rabbits are commonly kept in a variety of settings, including homes, laboratories, and veterinary clinics. Despite the popularity of keeping this prey species, little research has investigated current methods of handling. The aim of this study was to examine the experience of caregivers (owners and keepers) in using five handling methods commonly referred to in books written for companion animal (pet) owners and veterinary and/or laboratory personnel. An online survey was completed by 2644 respondents, representing all three of these groups, and breeders. Data were acquired to determine sources that participants used to gain knowledge of different handling methods, the methods they used and for what purposes they used them, and their perceptions of any associated difficulties or welfare concerns. Results indicated that participants most frequently used the method of supporting a rabbit’s body against a person’s chest, which was considered the easiest and most welfare-friendly method of the handling methods explored. “Scruffing with rear support” was the least used method and was considered to be distressing and painful for the rabbit. As rabbits are a terrestrial prey species, being picked up is likely an innately stressful experience. Additional research is encouraged to explore the experience of rabbits during handling to identify methods that can be easily used with the fewest welfare compromises.
DOI: 10.6084/m9.figshare.6188114
title: Additional file 1: of Quantitative study of medicinal plants used by the communities residing in Koh-e-Safaid Range, northern Pakistani-Afghan borders

description: Field data of the research project Quantitative study of medicinal plants used by the communities residing in Koh-e-Safaid Range northern Pakistani-Afghan border. (XLSX 167Â kb)
DOI: 10.6084/m9.figshare.6188114.v1
title: Additional file 1: of Quantitative study of medicinal plants used by the communities residing in Koh-e-Safaid Range, northern Pakistani-Afghan borders

description: Field data of the research project Quantitative study of medicinal plants used by the communities residing in Koh-e-Safaid Range northern Pakistani-Afghan border. (XLSX 167Â kb)
DOI: 10.6084/m9.figshare.6188111
title: Additional file 3: of Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

description: MS data. Table S5. Proteins identified by MS in visceral fat of broiler and layer females at the onset of sexual maturation (422 proteins). Table S6. A. List of enriched pathways obtained using Ingenuity software and the MS differential proteins (P ≤ 0.05). B. List of proteins involved in the Intrinsic Prothrombin Activation Pathway: details on their expression at the protein and mRNA levels. Excel Worksheet xlsm 216 KB. (XLSX 142 kb)
DOI: 10.6084/m9.figshare.6188111.v1
title: Additional file 3: of Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

description: MS data. Table S5. Proteins identified by MS in visceral fat of broiler and layer females at the onset of sexual maturation (422 proteins). Table S6. A. List of enriched pathways obtained using Ingenuity software and the MS differential proteins (P ≤ 0.05). B. List of proteins involved in the Intrinsic Prothrombin Activation Pathway: details on their expression at the protein and mRNA levels. Excel Worksheet xlsm 216 KB. (XLSX 142 kb)
DOI: 10.6084/m9.figshare.6188090
title: Additional file 2: of Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

description: Table S4. The primers used for the qPCR analyses. Excel Worksheet xlsm 12Â KB. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6188090.v1
title: Additional file 2: of Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

description: Table S4. The primers used for the qPCR analyses. Excel Worksheet xlsm 12Â KB. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6188069
title: Additional file 1: of Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

description: RNA-seq. Data. Table S1. Information about the RNA sequencing. Table S2: Transcripts identified by RNA-seq in visceral fat of broiler and layer females at the onset of sexual maturation. Table S3 Enriched pathways obtained using Ingenuity software and the RNA-seq differential transcripts (FDR ≤ 0.05; absolute fold change ≥1.5). A. List of enriched pathways. B. Schematic presentation of the enriched pathways. C. Expression pattern of the differentially expressed transcripts (FDR ≤ 0.05; absolute fold change ≥1.5) implicated in the in the PTEN pathway. Excel Worksheet xlsm 3.1 MB. (XLSX 3193 kb)
DOI: 10.6084/m9.figshare.6188069.v1
title: Additional file 1: of Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

description: RNA-seq. Data. Table S1. Information about the RNA sequencing. Table S2: Transcripts identified by RNA-seq in visceral fat of broiler and layer females at the onset of sexual maturation. Table S3 Enriched pathways obtained using Ingenuity software and the RNA-seq differential transcripts (FDR ≤ 0.05; absolute fold change ≥1.5). A. List of enriched pathways. B. Schematic presentation of the enriched pathways. C. Expression pattern of the differentially expressed transcripts (FDR ≤ 0.05; absolute fold change ≥1.5) implicated in the in the PTEN pathway. Excel Worksheet xlsm 3.1 MB. (XLSX 3193 kb)
DOI: 10.6084/m9.figshare.6188054
title: Additional file 2: of Complex evolution of the GSTM gene family involves sharing of GSTM1 deletion polymorphism in humans and chimpanzees

description: Sequence alignment of the GSTM1 region of 7 deleted humans and 7 deleted chimpanzees and reference genomes of both species. (TXT 252 kb)
DOI: 10.6084/m9.figshare.6188054.v1
title: Additional file 2: of Complex evolution of the GSTM gene family involves sharing of GSTM1 deletion polymorphism in humans and chimpanzees

description: Sequence alignment of the GSTM1 region of 7 deleted humans and 7 deleted chimpanzees and reference genomes of both species. (TXT 252 kb)
DOI: 10.6084/m9.figshare.6188048
title: Additional file 2: of Use of dietary indices to control for diet in human gut microbiota studies

description: HEI creation. (ZIP 233Â kb)
DOI: 10.6084/m9.figshare.6188048.v1
title: Additional file 2: of Use of dietary indices to control for diet in human gut microbiota studies

description: HEI creation. (ZIP 233Â kb)
DOI: 10.6084/m9.figshare.6188045
title: Additional file 4: of A microorganismsâ journey between plant generations

description: Fungal dataset. (XLS 166Â kb)
DOI: 10.6084/m9.figshare.6188045.v1
title: Additional file 4: of A microorganismsâ journey between plant generations

description: Fungal dataset. (XLS 166Â kb)
DOI: 10.6084/m9.figshare.6188033
title: MOESM4 of MicroRNA expression profiling for the prediction of resistance to neoadjuvant radiochemotherapy in squamous cell carcinoma of the esophagus

description: Additional file 4. Comparison of published miRNA/miRNA array data with the results of the microarray analysis of the present study.
DOI: 10.6084/m9.figshare.6188033.v1
title: MOESM4 of MicroRNA expression profiling for the prediction of resistance to neoadjuvant radiochemotherapy in squamous cell carcinoma of the esophagus

description: Additional file 4. Comparison of published miRNA/miRNA array data with the results of the microarray analysis of the present study.
DOI: 10.6084/m9.figshare.6188021
title: Additional file 1: of Complex evolution of the GSTM gene family involves sharing of GSTM1 deletion polymorphism in humans and chimpanzees

description: Table S1. The functional GSTM analyzed. Table S2. The GSTM pseudogenes detected. Table S3. PCR primers and sequencing primers. Figure S1. NJ and ML tree of the primate and tree shrew GSTM genes. Figure S2. A dotplot of Humans and Chimpanzees GSTM gene cluster. Figure S3. Genotyping results in chimpanzees by ddPCR and read-depth approaches. Figure S4. The length and frequency of the deletions shared between humans and chimpanzees. Figure S5. The manual alignment of the SDs of humans, chimpanzees and orangutans. Figure S6. Maximum likelihood trees of the human and chimpanzee segmental duplications using MAFFT [66]. Figure S7. The probability of a deletion with a similar upstream breakpoint to recurrently evolve independently in chimpanzees and humans given a particular mutation rate. (ZIP 2977 kb)
DOI: 10.6084/m9.figshare.6188021.v1
title: Additional file 1: of Complex evolution of the GSTM gene family involves sharing of GSTM1 deletion polymorphism in humans and chimpanzees

description: Table S1. The functional GSTM analyzed. Table S2. The GSTM pseudogenes detected. Table S3. PCR primers and sequencing primers. Figure S1. NJ and ML tree of the primate and tree shrew GSTM genes. Figure S2. A dotplot of Humans and Chimpanzees GSTM gene cluster. Figure S3. Genotyping results in chimpanzees by ddPCR and read-depth approaches. Figure S4. The length and frequency of the deletions shared between humans and chimpanzees. Figure S5. The manual alignment of the SDs of humans, chimpanzees and orangutans. Figure S6. Maximum likelihood trees of the human and chimpanzee segmental duplications using MAFFT [66]. Figure S7. The probability of a deletion with a similar upstream breakpoint to recurrently evolve independently in chimpanzees and humans given a particular mutation rate. (ZIP 2977 kb)
DOI: 10.6084/m9.figshare.6188015
title: Additional file 3: of A microorganismsâ journey between plant generations

description: Bacterial dataset. (XLS 2420Â kb)
DOI: 10.6084/m9.figshare.6188015.v1
title: Additional file 3: of A microorganismsâ journey between plant generations

description: Bacterial dataset. (XLS 2420Â kb)
DOI: 10.6084/m9.figshare.6188012
title: MOESM3 of MicroRNA expression profiling for the prediction of resistance to neoadjuvant radiochemotherapy in squamous cell carcinoma of the esophagus

description: Additional file 3. Complete results of microarray analysis.
DOI: 10.6084/m9.figshare.6188012.v1
title: MOESM3 of MicroRNA expression profiling for the prediction of resistance to neoadjuvant radiochemotherapy in squamous cell carcinoma of the esophagus

description: Additional file 3. Complete results of microarray analysis.
DOI: 10.6084/m9.figshare.6188003
title: Additional file 2: of A microorganismsâ journey between plant generations

description: Archaeal dataset. (XLS 34Â kb)
DOI: 10.6084/m9.figshare.6188003.v1
title: Additional file 2: of A microorganismsâ journey between plant generations

description: Archaeal dataset. (XLS 34Â kb)
DOI: 10.6084/m9.figshare.6187886
title: MOESM6 of Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes

description: Additional file 6: Table S3. Imputation quality of the established CAD associated SNPs in the discovery cohorts.
DOI: 10.6084/m9.figshare.6187886.v1
title: MOESM6 of Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes

description: Additional file 6: Table S3. Imputation quality of the established CAD associated SNPs in the discovery cohorts.
DOI: 10.6084/m9.figshare.6187874
title: MOESM2 of Antimicrobial resistance among clinically relevant bacterial isolates in Accra: a retrospective study

description: Additional file 2. List of isolates and proportion (%) of resistance against each tested antibiotic. Data shown for each laboratory. Total list of all bacteria isolated at the six laboratories and the percentage of resistant bacteria against all tested antibiotics. TH (Trust Hospital); MDC (Mediplast Diagnostic Center); PSGL (Patholab Solutions Ghana Limited); LAGH (LA General Hospital); G2ML (G2 Medical Laboratory); HTMC (Holy Trinity Medical Center).
DOI: 10.6084/m9.figshare.6187874.v1
title: MOESM2 of Antimicrobial resistance among clinically relevant bacterial isolates in Accra: a retrospective study

description: Additional file 2. List of isolates and proportion (%) of resistance against each tested antibiotic. Data shown for each laboratory. Total list of all bacteria isolated at the six laboratories and the percentage of resistant bacteria against all tested antibiotics. TH (Trust Hospital); MDC (Mediplast Diagnostic Center); PSGL (Patholab Solutions Ghana Limited); LAGH (LA General Hospital); G2ML (G2 Medical Laboratory); HTMC (Holy Trinity Medical Center).
DOI: 10.6084/m9.figshare.6187862
title: MOESM5 of Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes

description: Additional file 5: Table S2. Imputation quality of SNPs with association p-values &lt; 1.0 × 10-5 in the discovery cohorts.
DOI: 10.6084/m9.figshare.6187862.v1
title: MOESM5 of Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes

description: Additional file 5: Table S2. Imputation quality of SNPs with association p-values &lt; 1.0 × 10-5 in the discovery cohorts.
DOI: 10.6084/m9.figshare.6187817
title: Additional file 4: of The presence of human mesenchymal stem cells of renal origin in amniotic fluid increases with gestational time

description: KEGG pathways of exclusive groups and shared genes of AF-MSCs, HREpCs and UM51. (XLSX 76Â kb)
DOI: 10.6084/m9.figshare.6187817.v1
title: Additional file 4: of The presence of human mesenchymal stem cells of renal origin in amniotic fluid increases with gestational time

description: KEGG pathways of exclusive groups and shared genes of AF-MSCs, HREpCs and UM51. (XLSX 76Â kb)
DOI: 10.6084/m9.figshare.6187811
title: Additional file 1: of Metabolomic analysis of longissimus from underperforming piglets relative to piglets with normal preweaning growth

description: Supplemental muscle data. (XLSX 1373 kb)
DOI: 10.6084/m9.figshare.6187811.v1
title: Additional file 1: of Metabolomic analysis of longissimus from underperforming piglets relative to piglets with normal preweaning growth

description: Supplemental muscle data. (XLSX 1373 kb)
DOI: 10.6084/m9.figshare.6187805
title: MOESM3 of Convalescent Plasmodium falciparum-specific seroreactivity does not correlate with paediatric malaria severity or Plasmodium antigen exposure

description: Additional file 3. Annotations of PfEMP1/var genes and domains encoded.
DOI: 10.6084/m9.figshare.6187805.v1
title: MOESM3 of Convalescent Plasmodium falciparum-specific seroreactivity does not correlate with paediatric malaria severity or Plasmodium antigen exposure

description: Additional file 3. Annotations of PfEMP1/var genes and domains encoded.
DOI: 10.6084/m9.figshare.6187793
title: Additional file 3: of The presence of human mesenchymal stem cells of renal origin in amniotic fluid increases with gestational time

description: GOs of exclusive groups and shared genes of AF-MSCs, HREpCs and UM51. (XLS 331Â kb)
DOI: 10.6084/m9.figshare.6187793.v1
title: Additional file 3: of The presence of human mesenchymal stem cells of renal origin in amniotic fluid increases with gestational time

description: GOs of exclusive groups and shared genes of AF-MSCs, HREpCs and UM51. (XLS 331Â kb)
DOI: 10.6084/m9.figshare.6187787
title: Additional file 2: of Effects of desiccation stress on adult female longevity in Aedes aegypti and Ae. albopictus (Diptera: Culicidae): results of a systematic review and pooled survival analysis

description: Table S2. Summary of the methods, results and conclusions of the 17 studies included in the present review. (format: .xlsx) (XLSX 60 kb)
DOI: 10.6084/m9.figshare.6187787.v1
title: Additional file 2: of Effects of desiccation stress on adult female longevity in Aedes aegypti and Ae. albopictus (Diptera: Culicidae): results of a systematic review and pooled survival analysis

description: Table S2. Summary of the methods, results and conclusions of the 17 studies included in the present review. (format: .xlsx) (XLSX 60 kb)
DOI: 10.6084/m9.figshare.6187778
title: Additional file 2: of The presence of human mesenchymal stem cells of renal origin in amniotic fluid increases with gestational time

description: Gene list of exclusive groups and shared genes of AF-MSCs, HREpCs and UM51. (XLS 995Â kb)
DOI: 10.6084/m9.figshare.6187778.v1
title: Additional file 2: of The presence of human mesenchymal stem cells of renal origin in amniotic fluid increases with gestational time

description: Gene list of exclusive groups and shared genes of AF-MSCs, HREpCs and UM51. (XLS 995Â kb)
DOI: 10.6084/m9.figshare.6187769
title: MOESM1 of Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes

description: Additional file 1: Table S1. Main design and sample characteristics of the discovery and replication studies.
DOI: 10.6084/m9.figshare.6187769.v1
title: MOESM1 of Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes

description: Additional file 1: Table S1. Main design and sample characteristics of the discovery and replication studies.
DOI: 10.6084/m9.figshare.12894032
title: R0189_20171007a_videos

description: Rat 0189, skilled reaching data collected on 10/7/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12894032.v1
title: R0189_20171007a_videos

description: Rat 0189, skilled reaching data collected on 10/7/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.6187418
title: Untitled Item

description: used in the manuscript
DOI: 10.6084/m9.figshare.6187418.v1
title: Untitled Item

description: used in the manuscript
DOI: 10.6084/m9.figshare.6187307
title: Data from Social object play between captive bottlenose and Risso’s dolphins

description: The file set contains video and excel data of social object play between captive bottlenose and Risso's dolphins taken at the Kujukushima Aquarium, Umi Kirara, Japan.
DOI: 10.6084/m9.figshare.6187256
title: The Diorisis Ancient Greek Corpus

description: An annotated corpus of literary Ancient Greek sourced from the Perseus Canonical Greek Lit repository (https://github.com/PerseusDL/canonical-greekLit), “The Little Sailing” digital library (http://www.mikrosapoplous.gr/en/texts1en.html), and the Bibliotheca Augustana digital library (http://www.hs-augsburg.de/~harsch/augustana.html#gr).<br>The corpus consists of 820 texts spanning between the beginnings of the AG literary tradition (Homer) and the fifth century AD, and it counts 10,206,421 words.