cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14838807
title: µCT series of Mytilus edulis juvenile (252-1)

description: SRµCT scan of a aposymbiotic M<i>ytilus edulis</i> juvenile. The mussel was sampled close to Kiel, Germany (54.394 N; 10.190 E) at 1.5 m water depth in 2018. The mussel was fixed with 2.5% glutaraldehyde stored in PHEM-buffer. The sample was scanned at the DESY in Hamburg Germany.
DOI: 10.5517/ccdc.csd.cc2846d1
title: CCDC 2089412: Experimental Crystal Structure Determination

description: Related Article: A. Raghuvanshi, A. Krupp, L. Viau, M. Knorr, C. Strohmann|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|718|doi:10.1107/S2056989021006113
DOI: 10.5517/ccdc.csd.cc2846f2
title: CCDC 2089413: Experimental Crystal Structure Determination

description: Related Article: A. Raghuvanshi, A. Krupp, L. Viau, M. Knorr, C. Strohmann|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|718|doi:10.1107/S2056989021006113
DOI: 10.5281/zenodo.5026641
title: USF OmicsHub Metagenomics Workshop demo-data

description: small demo dataset for metagenomics workshop.
description: Excerpted from larger human gut-microbiome shotgun metagenomics dataset
DOI: 10.5281/zenodo.5026640
title: USF OmicsHub Metagenomics Workshop demo-data

description: small demo dataset for metagenomics workshop.
description: Excerpted from larger human gut-microbiome shotgun metagenomics dataset
DOI: 10.6084/m9.figshare.14838867
title: Pol II shCr_bamcoverage.bedgraph

description: Pol II ChIP-Seq
DOI: 10.6084/m9.figshare.14838867.v1
title: Pol II shCr_bamcoverage.bedgraph

description: Pol II ChIP-Seq
DOI: 10.5255/ukda-sn-854728
title: Peer-to-peer Deaf Multiliteracies, 2017-2020

description: This project on multiliteracies involved groups of deaf learners in India, Uganda, and Ghana, both in primary schools and with young adult learners. The Peer-to-Peer Deaf Multiliteracies project examined how some of the dynamics that contribute to learners’ marginalisation can be changed by involving deaf individuals in the design of new teaching approaches, and by using children and young people's lived experiences and existing multilingual-multimodal skills as the starting point for theme-based learning. The aim was for participants to develop not only English literacy, but "multiliteracies", i.e. skills in sign languages, ICT, written English, creative expression through drawing and acting, and other forms of multimodal communication. The data collection includes reports from classroom settings compiled by tutors and by research assistants, pre-and post-tests on language and literacy abilities with learners, samples from an online learning platform, and multimedia portfolios collected from learners. A total of 124 young deaf adults and 79 deaf primary school children took part in the research
DOI: 10.48420/14784570
title: Training data for effect of preventive actions

description: The provided Matlab file contains simulation data for the effect of preventive actions during extreme events in the German transmission network (489 buses, 852 lines). The data can be used for training and testing of machine learning classifiers identifying the optimum preventive action given a set of event parameters. The data contains 2000 events, and for each event and preventive action the results of 100 randomly created event outcomes. Cascading failures were simulated using AC-CFM (https://github.com/mnoebels/AC-CFM).<br>The following preventive actions are considered:1 - no preventive action2 - isolating a vulnerable area3 - islanding into 5 islands4 - islanding into 10 islands<br><br>The file contains the following variables:<br>- network is a struct describing the network and can be used as a network case struct for Matpower. network has an additional field "coordinates", which contains the geographic coordinates of each bus.<br>- scenario_details is a table describing the event properties, such as location, radius, intensity and network load. It also contains the load supplied after pre-event load reduction for the preventive actions.<br>- faulty_lines is a 2000x100x852 matrix describing the lines damaged by each event and for each event outcome. The matrix contains a "1" if the respective line has been damaged, and "0" if not.<br>- load_after_cascade is a 2000x100x4 matrix describing the load supplied after the event for each event, event outcome and preventive action.
DOI: 10.48420/14784570.v1
title: Training data for effect of preventive actions

description: The provided Matlab file contains simulation data for the effect of preventive actions during extreme events in the German transmission network (489 buses, 852 lines). The data can be used for training and testing of machine learning classifiers identifying the optimum preventive action given a set of event parameters. The data contains 2000 events, and for each event and preventive action the results of 100 randomly created event outcomes. Cascading failures were simulated using AC-CFM (https://github.com/mnoebels/AC-CFM).<br>The following preventive actions are considered:1 - no preventive action2 - isolating a vulnerable area3 - islanding into 5 islands4 - islanding into 10 islands<br><br>The file contains the following variables:<br>- network is a struct describing the network and can be used as a network case struct for Matpower. network has an additional field "coordinates", which contains the geographic coordinates of each bus.<br>- scenario_details is a table describing the event properties, such as location, radius, intensity and network load. It also contains the load supplied after pre-event load reduction for the preventive actions.<br>- faulty_lines is a 2000x100x852 matrix describing the lines damaged by each event and for each event outcome. The matrix contains a "1" if the respective line has been damaged, and "0" if not.<br>- load_after_cascade is a 2000x100x4 matrix describing the load supplied after the event for each event, event outcome and preventive action.
DOI: 10.5519/qd.hoc021lm
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (127 records)
DOI: 10.5519/qd.rnr9xdbr
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2 records)
DOI: 10.17632/k4sxpg3344.1
title: Autistic Traits in Adolescents who Self-harm

description: This is raw and analysis data for empirical study, entitled 'Autistic Traits in Adolescents who Self-harm'. The major objective of this study was to test the hypothesis that autistic traits predict the presence and recurrence of self-harm, and to determine any relationship mediated by the Interpersonal Psychological Theory of Suicide (IPTS). We examined autistic traits in 60 adolescents with suicidal or non-suicidal self-harm and 60 healthy controls. We assessed any interaction in Autistic Quotient (AQ) score and self-harm whether it is explained by thwarted belonging/perceived burdensomeness in the Interpersonal Needs Questionnaire (INQ); victimization in Olweus Bully/Victim Questionnaire (OBVQ); maltreatment in Childhood Trauma Questionnaire (CTQ). Impairments in communication (OR= 1.30) and social skill (OR= 1.28) predicted self-harm, yet the association became insignificant after the inclusion of thwarted belonging and perceived burdensomeness, which were independent predictors of the presence of self-harm. AQ social skill (OR= 2.24) and total (OR= 1.37) scores predicted recurrence of self-harm; the interactions were mediated by mostly thwarted belonging ( respectively, b value were 1.49 and 36.68).
DOI: 10.17632/v9gmsj5m59.1
title: Supplementary files for: Bimodal alteration of the oceanic crust revealed by halogen and noble gas systematics in the Oman Ophiolite

description: Data Set S1. Proportion of minerals determined by XRD in all whole rock and mineral separates. Data Set S2. Summary of electron probe microanalysis (EPMA) acquisition parameters. Data Set S3. Full EPMA dataset of major elements and Cl for halogen-bearing minerals including amphibole, iddingsite/serpentine, chlorite as well as thomsonite and prehnite. Data Set S4. Summary of irradiation parameters including neutron fluxes calculated from standards and monitors (Hb3Gr, scapolites, Shallowater), vertical variation in J, ɸtherm and ɸfast and associated linear regressions used to interpolate to sample positions. Data Set S5. Full neutron-irradiated dataset including Cl, Br, I, K, Ca, Ba and U abundances and natural noble gas abundances (Ar, Kr, Xe) and isotopes (40Ar/36Ar). Data Set S6. Full un-irradiated dataset including, He, Ne, Ar, Kr and Xe abundances and isotopes including 3He/4He. Data Set S7. LOI data measured on whole rock samples. Figure S1 - High resolution versions of transmitted light photomicrographs XRD spectra - XRD spectra from mineralogical analysis of whole rocks and minerals
DOI: 10.17632/bmfwr33wv3.1
title: X-ray diffraction images and tensile testing results of 16 NiTiTa alloys

description: The "NiTiTa" folder contains synchrotron X-ray data of 16 different NiTiTa alloys in the annealed condition as well as the standard CeO2 sample used for instrument calibration. Alloy compositions are listed in the related paper. folder "NiTiTa 900C HEAT TREATING.is_tcyclic_RawData" contain raw tensile testing data of alloys heat treated at 900C. "NiTiTa 500C heat treating raw data" contains tensile testing raw data of alloys heat treated at 500C.
DOI: 10.17632/pkshv6zhpc.1
title: Supplementary files for: Asynchronous fluid infiltration and metasomatism in supra-subduction zone oceanic lithosphere: a case study from the Leka Ophiolite Complex, Norway

description: Abstract Subduction of hydrated oceanic lithosphere represents a profound coupling of the Earth’s surface and its interior, with significant implications for both the internal dynamics and chemistry, as well as the surface habitability of our planet. Serpentinised lithospheric mantle is increasingly recognised as an important component in the geochemical cycling of many volatile species. However, our understanding of the extent of hydration and heterogeneity in volatile geochemistry at depth is limited by a lack of samples from in-situ lithospheric mantle. In this study, we apply coupled analyses of halogen abundances and noble gas isotopes to a suite of mineral separates from ultramafic lithologies from the Leka Ophiolite Complex, Norway, in order to trace the sources of fluids and critically assess the relative timing of high- and low-temperature fluid infiltration episodes. Results indicate extreme halogen abundance heterogeneity in the mantle and lower crustal transition zone of the Leka ophiolite, covering much of the known global range of serpentinite compositions. The data extend from near seawater- like compositions (Br/Cl=3.47 x 10-3, I/Cl=3.04x10-6) to very high values of I/Cl (≤6.7 x 10-3) and Br/Cl (≤9.9 x 10-3) and are characterised by a marked decoupling of halogens, both from one another and from noble gases. Relative enrichments in I, 84Kr, 132Xe and radiogenic 40Ar in serpentinites and fresh minerals are attributed to supra-subduction zone fluid infiltration at high temperature followed by serpentinisation by variable mixtures of seawater, fluid-derived from altered oceanic crust and serpentinite dehydration. In addition, assimilation of lower crustal lithologies metasomatised by brine during hydrothermal circulation has resulted in enrichment of Br in some samples. These enrichments are absent, or much less pronounced in non-subduction zone-related samples. Together, these observations allow deconvolution of a series of metasomatic events and indicate that hydration was highly asynchronous, resulting in low and high temperature events mutually overprinting one another. While this complicates our understanding of Leka and other ophiolites as straightforward natural laboratories for oceanic serpentinisation, it demonstrates that complex multi-phase volatile histories can be preserved in ophiolitic materials over timescales of at least ~0.5 Gyr. This raises the prospect that ophiolites may be useful archives of a diverse range of fluid processes over geologically-significant timescales.
DOI: 10.17632/bsn65bztxy.4
title: Time of onset and duration of post-COVID-19 acute telogen effluvium
DOI: 10.17632/8r2jgm6ygh.2
title: Data For: Internet Gaming Disorder: An Emerging Public Health Concern Among an Advanced Level Student Population from Colombo, Sri Lanka

description: The following database contains the data obtained by a cross-sectional survey conducted among 395 Advanced Level students studying in four schools of the Colombo Educational Zone, Sri Lanka. It was the aim of this study to determine the prevalence and associations of Internet Gaming Disorder among a Sri Lankan student population. Participants filled a pretested, self-administered questionnaire exploring sociodemographic factors, academic characteristics, extra-curricular involvement, sleep factors and gaming habits/preferences. Internet Gaming Disorder (IGD) has been assessed using English and Sinhala versions of the Internet Gaming Disorder Scale (IGDS9-SF) developed by Pontes and Griffiths in 2015. Positive IGD status has been determined based on the endorsement of five or more items, with a score of 4/5 or 5/5 considered as an endorsement of a particular item. Motives for gaming have been assessed using the Motives for Online Gaming Questionnaire (MOGQ) and subscale scores (i.e., Social, Escape, Competition, Fantasy, Skill Development, Coping and Recreation) have been summed up using the scores of relevant items (Demetrovics et al., 2011). Sleep Quality has been assessed using the Single Item Sleep Quality Scale (SISQ), scored from 1-10 with higher scores indicating better sleep quality (Snyder et al., 2018). Psychosocial factors such as self-esteem, having no/few friends and not being satisfied with one's appearance has been graded on a 5-point Likert Scale with higher scores indicating higher levels of agreement. A similar scale is used to assess interindividual factors such as the parent-child and teacher-student relationship. Note that the distribution of IGDS9-SF scores is not normal in this sample, warranting the necessity of using non-parametric methods for analysis. Some of the categories in the variables have been amalgamated (shown as “Cat.”) to facilitate analysis in the original study.
DOI: 10.17632/mtsngzp33p.1
title: A report of 1,290 Pediatric hidradenitis suppurativa hospitalizations: A Nation-wide analysis from the Kids’ Inpatient Database

description: Supplemental table of used ICD 10 codes
DOI: 10.17632/s47jxv6cjp.1
title: Isogeometric nonlinear multiscale modelling of woven textiles

description: This zip file accompanies the complete datasets of woven fabric virtual tests conducted at the Computational Mechancis Lab at the University of Cambridge within the years 2016-2020. File structure and what is included Woven Textiles -&gt; Energies - Uni, Bi-axial tests -&gt; energy_nxn.txt - This file contains n*n number of datapoints - Each datapoint has the form; E11 E22 SE -&gt; Stresses - Uni, Bi-axial tests -&gt; stress_nxn.txt - This file contains n*n number of datapoints - Each datapoint has the form; E11 E22 S11 S22
DOI: 10.17632/xp2xt6z7vc.1
title: Wicket Game: The History of Evolution and Commercialization of Cricket in India from a British Nob to a Bollywood Blockbuster

description: IPL player performance and salary data
DOI: 10.17632/b4b39jp8vj.1
title: OVIRS observations of organics and carbonates on Bennu: search for surface feature context

description: The supporting data and supplementary plots of the article corresponding to the same name as the directory. The abstract of the article is: The OSIRIS-REx Visible and InfraRed Spectrometer (OVIRS) onboard the Origins, Spectral Interpretation, Resource Identification, and Security–Regolith Explorer (OSIRIS-REx) spacecraft detected ~3.4-μm absorption features indicative of carbonates and organics on near-Earth asteroid (101955) Bennu. We apply a Kolmogorov-Smirnov similarity test to OVIRS spectra of Bennu and laboratory spectra of minerals to categorize 3.4-μm features observed on Bennu as representing either carbonates or organics. Among the 15,585 spectra acquired by OVIRS during high-resolution (4 to 9 m/spectrum footprint) reconnaissance observations of select locations on Bennu's surface, we find 544 spectral matches with carbonates and 245 spectral matches with organics (total of 789 high-confidence spectral matches). We map the locations of these matches and characterize features of Bennu’'s surface using corresponding image data. Image data are used to quantitatively characterize the albedo within each spectrometer footprint. We find no apparent relationships between spectral classification and surface morphological expression, and we find no correlation between carbon species classification and other spectral properties such as slope or band depth. This suggests either that carbonates and organics are ubiquitous across the surface of Bennu, independent of surface features (consistent with findings from laboratory studies of carbonaceous chondrites), or that the observations do not have the spatial resolution required to resolve differences. However, we find more organic spectral matches at certain locations, including the site from which the OSIRIS-REx mission collected a sample, than at others. Higher concentrations of organics may be explained if these materials have been more recently exposed to surface alteration processes, perhaps by recent crater formation.
DOI: 10.17632/sv9d9hmvrm.1
title: Analysis of local protein accumulation kinetics by live-cell imaging in yeast systems

description: This Dataset relates to Star Protocols paper: "Analysis of local protein accumulation kinetics by live-cell imaging in yeast systems."
DOI: 10.6084/m9.figshare.14587611
title: Supplementary_Table_3_Stool_DEmiRNAs.xlsx

description: Supplementary Table 3. A) Expression levels and differential expression analysis of stool miRNAs; B) Results of the differential expression analysis of the 49 stool DEmiRNAs considering different covariates in the DESeq2 model; C) Results of a correlation analysis between stool DEmiRNAs expression and subject age and years of non-omnivorous diet; D) HMDD annotations for the hairpin of stool DEmiRNAs; E) Differential expression analysis of stool DEmiRNAs considering an independent group of O subjects (O validation).
DOI: 10.6084/m9.figshare.14587611.v4
title: Supplementary_Table_3_Stool_DEmiRNAs.xlsx

description: Supplementary Table 3. A) Expression levels and differential expression analysis of stool miRNAs; B) Results of the differential expression analysis of the 49 stool DEmiRNAs considering different covariates in the DESeq2 model; C) Results of a correlation analysis between stool DEmiRNAs expression and subject age and years of non-omnivorous diet; D) HMDD annotations for the hairpin of stool DEmiRNAs; E) Differential expression analysis of stool DEmiRNAs considering an independent group of O subjects (O validation).
DOI: 10.6084/m9.figshare.14587611.v3
title: Supplementary_Table_3_Stool_DEmiRNAs.xlsx

description: Supplementary Table 3. A) Expression levels and differential expression analysis of stool miRNAs; B) Results of the differential expression analysis of the 49 stool DEmiRNAs considering different covariates in the DESeq2 model; C) Results of a correlation analysis between stool DEmiRNAs expression and subject age and years of non-omnivorous diet; D) HMDD annotations for the hairpin of stool DEmiRNAs; E) Differential expression analysis of stool DEmiRNAs considering an independent group of O subjects (O validation).
DOI: 10.5281/zenodo.5026936
title: Benchmark Dataset for Structure Refinement Methods of Protein Complex Models

description: This is the dataset used in our work entitled " Benchmarking of Structure Refinement Methods for Protein Complex Model " by Jacob Verburgt and Daisuke Kihara, which is under review. ZDOCK Derived Benchmark Dataset: The primary benchmark set used in was directly derived from the ZDOCK Benchmark set. The ZDOCK set contains four structures per target: An unbound ligand, an unbound receptor, a bound ligand, and a bound receptor. The benchmark set is available in such a way where the coordinates of the bound subunits are oriented identical to their complex structure, and the unbound subunits are superimposed onto their respective bound subunits. Our dataset creates the optimially oriented "unbound" complexes by combining the superimposed and unbound subunits, along with removal of waters, ligands, and other non-protein atoms. These unbound complexes are saved in the dataset in the form "XXXX_c_u.pdb", where XXXX is the PDB ID. From the complete ZDOCK Benchmark of 230 targets, 18 targets were removed due to containing multiple ligand chains, which is incompatible with the standard ligand to receptor model used within CAPRI. The ZDOCK PDB IDâ€™s of these targets are 1AKJ", "1BJ1", "1DE4", "1EER", "1EXB", "1EZU", "1GP2", "1I9R", "1JMO", "1K74", "1N2C", "1QFW", "2HMI", "3EO1", "3HMX", "4FQI", "4GXU", and "9QFW". There are an additional 8 targets where the superimpostion of the ligand and receptor structures onto the complex led to entanglement of the chains and were subsequently removed from the dataset. The ZDOCK PDB IDs for these targets are "1BGX", "1H1V", "1IRA", "1R8S", "1Y64", "2OT3", "3AAD", "4GAM". Note: In the work, we also used CAPRI scoring model dataset derived from CAPRI rounds 38-45. This dataset is unable to be distributed directly by us due to CAPRI guidelines, but can be derived from "Scoring round" models from the CAPRI Website . The targets considered were T122-T125, T131-T133, and T136, as these were targets which contained globular protein ligands and receptors. Please contact us directly if you have any further questions on this dataset.
DOI: 10.5281/zenodo.5026935
title: Benchmark Dataset for Structure Refinement Methods of Protein Complex Models

description: This is the dataset used in our work entitled " Benchmarking of Structure Refinement Methods for Protein Complex Model " by Jacob Verburgt and Daisuke Kihara, which is under review. ZDOCK Derived Benchmark Dataset: The primary benchmark set used in was directly derived from the ZDOCK Benchmark set. The ZDOCK set contains four structures per target: An unbound ligand, an unbound receptor, a bound ligand, and a bound receptor. The benchmark set is available in such a way where the coordinates of the bound subunits are oriented identical to their complex structure, and the unbound subunits are superimposed onto their respective bound subunits. Our dataset creates the optimially oriented "unbound" complexes by combining the superimposed and unbound subunits, along with removal of waters, ligands, and other non-protein atoms. These unbound complexes are saved in the dataset in the form "XXXX_c_u.pdb", where XXXX is the PDB ID. From the complete ZDOCK Benchmark of 230 targets, 18 targets were removed due to containing multiple ligand chains, which is incompatible with the standard ligand to receptor model used within CAPRI. The ZDOCK PDB IDâ€™s of these targets are 1AKJ", "1BJ1", "1DE4", "1EER", "1EXB", "1EZU", "1GP2", "1I9R", "1JMO", "1K74", "1N2C", "1QFW", "2HMI", "3EO1", "3HMX", "4FQI", "4GXU", and "9QFW". There are an additional 8 targets where the superimpostion of the ligand and receptor structures onto the complex led to entanglement of the chains and were subsequently removed from the dataset. The ZDOCK PDB IDs for these targets are "1BGX", "1H1V", "1IRA", "1R8S", "1Y64", "2OT3", "3AAD", "4GAM". Note: In the work, we also used CAPRI scoring model dataset derived from CAPRI rounds 38-45. This dataset is unable to be distributed directly by us due to CAPRI guidelines, but can be derived from "Scoring round" models from the CAPRI Website . The targets considered were T122-T125, T131-T133, and T136, as these were targets which contained globular protein ligands and receptors. Please contact us directly if you have any further questions on this dataset.