cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6jmdxs
title: Occurrence Download

description: A dataset containing 29354 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-75.0481821000000053 39.8871929000000023, -75.0481821000000053 39.8905489400000022, -75.0481821000000053 39.8932337700000019, -75.0481821000000053 39.8968135499999974, -75.0481821000000053 39.9006170600000019, -75.0481821000000053 39.9059867200000014, -75.0481821000000053 39.9095664999999968, -75.0439376900000070 39.9095664999999968, -75.0381300600000003 39.9095664999999968, -75.0350028699999996 39.9095664999999968, -75.0285251300000056 39.9095664999999968, -75.0229405000000042 39.9095664999999968, -75.0229405000000042 39.9062104599999969, -75.0229405000000042 39.9006170600000019, -75.0229405000000042 39.8961423399999973, -75.0229405000000042 39.8925625600000018, -75.0229405000000042 39.8871929000000023, -75.0265147899999931 39.8871929000000023, -75.0312055699999974 39.8871929000000023, -75.0358963599999953 39.8871929000000023, -75.0414806200000015 39.8871929000000023, -75.0455012900000042 39.8871929000000023, -75.0481821000000053 39.8871929000000023))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 29354 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081022-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jcch9s
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Excorallana quadricornis (Hansen, 1890)"
 ]
}

 The dataset includes 47 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0119392-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7z5y9
title: Occurrence Download

description: A dataset containing 9977 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Amaranthus powellii S.Watson"
 ]
}

 The dataset includes 9977 records from 226 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109707-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-78683
title: Redemption tidings, vol. 58, nos. 1-52, 7 Jan. - 30 Dec. 1982

description: [description english/roman)] Issued weekly. "The pentecostal voice of Assemblies of God" -- subtitle. Includes Global action, 1 Apr. 1982 (in vol. 58, no. 13).
DOI: 10.15468/dl.qjs9q6
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orthoconchoecia bispinosa (Claus, 1890)"
 ]
}

 The dataset includes 33 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127098-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zs4vsj
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orthione furcata (Richardson, 1904)"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127093-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h8xwjj
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ostrincola gracilis Wilson C.B., 1944"
 ]
}

 The dataset includes 53 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127115-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k2z8yj
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Osphranticum labronectum Forbes S.A., 1882"
 ]
}

 The dataset includes 35 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127111-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.43kzqp
title: Occurrence Download

description: A dataset containing 141 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ourozeuktes bopyroides (Lesueur, 1814)"
 ]
}

 The dataset includes 141 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127116-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6xyuhv
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abronia fuscolabialis (Tihen, 1944))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033103-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7twkar
title: Occurrence Download

description: A dataset containing 11994 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Trifolium repens L."
 ]
}

 The dataset includes 11994 records from 429 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127118-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rm8bnt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Sinocarum acronemifolium (C.B.Clarke) P.K.Mukh. & Constance)",
 {
 "or" : [
 "Country is China",
 "Country is Chinese Taipei"
 ]
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031790-240906103802322/datasets/export for details.
DOI: 10.25377/sussex.26113753
title: Data for 'Feeling Heard: an uncontrolled feasibility study evaluating a novel intervention pathway for psychosis patients who are distressed by hearing voices'

description: Data for paper published in <i>Psychosis </i>(May 2024). The data file contains itemised data for all clinical measures. This includes data that was not presented in the published paper, i.e., data that was collected at monthly intervals between the baseline, post-GiVE and final assessments. The data is contained within an SPSS file.<b>Abstract</b>Cognitive Behaviour Therapy for psychosis (CBTp) has been the psychological intervention recommended for the treatment of psychosis for the past two decades. However, benefits from and access to CBTp are limited. Responses to these issues have included the targeting of CBTp at single symptoms and the delivery of CBT-informed interventions by briefly trained therapists. We sought to combine these approaches by drawing upon a wider workforce of therapists to deliver a pathway of interventions for distressing voices.This study was an uncontrolled feasibility study evaluating a pathway of CBT-informed interventions offered to psychosis patients who were distressed by hearing voices. The evaluation of outcomes focused on recruitment, retention, potential for effectiveness and safety.<br>
DOI: 10.25377/sussex.26113753.v2
title: Data for 'Feeling Heard: an uncontrolled feasibility study evaluating a novel intervention pathway for psychosis patients who are distressed by hearing voices'

description: Data for paper published in <i>Psychosis </i>(May 2024). The data file contains itemised data for all clinical measures. This includes data that was not presented in the published paper, i.e., data that was collected at monthly intervals between the baseline, post-GiVE and final assessments. The data is contained within an SPSS file.<b>Abstract</b>Cognitive Behaviour Therapy for psychosis (CBTp) has been the psychological intervention recommended for the treatment of psychosis for the past two decades. However, benefits from and access to CBTp are limited. Responses to these issues have included the targeting of CBTp at single symptoms and the delivery of CBT-informed interventions by briefly trained therapists. We sought to combine these approaches by drawing upon a wider workforce of therapists to deliver a pathway of interventions for distressing voices.This study was an uncontrolled feasibility study evaluating a pathway of CBT-informed interventions offered to psychosis patients who were distressed by hearing voices. The evaluation of outcomes focused on recruitment, retention, potential for effectiveness and safety.<br>
DOI: 10.25377/sussex.26113753.v1
title: Data for 'Feeling Heard: an uncontrolled feasibility study evaluating a novel intervention pathway for psychosis patients who are distressed by hearing voices' (2024)

description: Data for paper published in <i>Psychosis </i>(May 2024). The data file contains itemised data for all clinical measures. This includes data that was not presented in the published paper, i.e., data that was collected at monthly intervals between the baseline, post-GiVE and final assessments. The data is contained within an SPSS file.<b>Abstract</b>Cognitive Behaviour Therapy for psychosis (CBTp) has been the psychological intervention recommended for the treatment of psychosis for the past two decades. However, benefits from and access to CBTp are limited. Responses to these issues have included the targeting of CBTp at single symptoms and the delivery of CBT-informed interventions by briefly trained therapists. We sought to combine these approaches by drawing upon a wider workforce of therapists to deliver a pathway of interventions for distressing voices.This study was an uncontrolled feasibility study evaluating a pathway of CBT-informed interventions offered to psychosis patients who were distressed by hearing voices. The evaluation of outcomes focused on recruitment, retention, potential for effectiveness and safety.<br>
DOI: 10.15468/dl.dcuds8
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nyctanolis pernix Elias & Wake, 1983"
 ]
}

 The dataset includes 35 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031791-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgggst
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((14.58961 52.17992,14.58307 52.17757,14.57116 52.1775,14.54047 52.17035,14.55246 52.14791,14.57767 52.14807,14.59686 52.17381,14.59298 52.17708,14.58961 52.17992))"
 ]
}

 The dataset includes 17 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031792-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7458032
title: Deep learning-driven fragment ion series classification enables highly precise and sensitive de novo peptide sequencing

description: This Zenodo record contains the dataset and model weights for "Deep learning-driven fragment ion series classification enables highly precise and sensitive de novo peptide sequencing".
DOI: 10.5281/zenodo.13844085
title: Deep learning-driven fragment ion series classification enables highly precise and sensitive de novo peptide sequencing

description: This Zenodo record contains the dataset and model weights for "Deep learning-driven fragment ion series classification enables highly precise and sensitive de novo peptide sequencing".


 


This repository contains the following files:



	

	
For the human dataset by Wang et al.:

	

		

		
train_val_test_split.csv containing the mapping of the correct peptide by MaxQuant to either train, validation or test set
		
		

		
psms_train_val_test.csv containing the mapping of correct PSMs (scan number, raw file and correct peptide by MaxQuant) to either train, validation or test set
		
		

		
updated_spectralis_test_out.csv as before containing Spectralis-EA predictions and scores on test set, as well as initial peptides and scores by Casanovo and Novor and now containing also correct peptides by MaxQuant and Spectralis-scores on the combination of Casanovo and Novor sequences (column named spectralis_score_onlyRescoring)
		
		

		
spectralis_test_out_heart_analysis.csv subset of 20220822_spectralis_test_out.csv containing only PSMs for the tissue heart with the computation of precision and recall values
		
		

		
spectralis_test_out_pointnovo_deepnovo.csv containing predictions by DeepNovo and PointNovo with original scores and Spectralis-score, as well as correct peptides by MaxQuant
		
	
	



 



	

	
For the nine-species dataset by Tran et al.:

	

		

		
spectralis_ninespecies_out.csv containing spectrum identifiers, correct peptides by PEAKSDB, predicted peptides by the different de novo sequencing tools as well as original scores and Spectralis-scores for the different PSMs.
DOI: 10.5281/zenodo.7458031
title: Deep learning-driven fragment ion series classification enables highly precise and sensitive de novo peptide sequencing

description: This Zenodo record contains the dataset and model weights for "Deep learning-driven fragment ion series classification enables highly precise and sensitive de novo peptide sequencing".


 


This repository contains the following files:



	

	
For the human dataset by Wang et al.:

	

		

		
train_val_test_split.csv containing the mapping of the correct peptide by MaxQuant to either train, validation or test set
		
		

		
psms_train_val_test.csv containing the mapping of correct PSMs (scan number, raw file and correct peptide by MaxQuant) to either train, validation or test set
		
		

		
updated_spectralis_test_out.csv as before containing Spectralis-EA predictions and scores on test set, as well as initial peptides and scores by Casanovo and Novor and now containing also correct peptides by MaxQuant and Spectralis-scores on the combination of Casanovo and Novor sequences (column named spectralis_score_onlyRescoring)
		
		

		
spectralis_test_out_heart_analysis.csv subset of 20220822_spectralis_test_out.csv containing only PSMs for the tissue heart with the computation of precision and recall values
		
		

		
spectralis_test_out_pointnovo_deepnovo.csv containing predictions by DeepNovo and PointNovo with original scores and Spectralis-score, as well as correct peptides by MaxQuant
		
	
	



 



	

	
For the nine-species dataset by Tran et al.:

	

		

		
spectralis_ninespecies_out.csv containing spectrum identifiers, correct peptides by PEAKSDB, predicted peptides by the different de novo sequencing tools as well as original scores and Spectralis-scores for the different PSMs.
DOI: 10.5281/zenodo.8393846
title: Deep learning-driven fragment ion series classification enables highly precise and sensitive de novo peptide sequencing

description: This Zenodo record contains the dataset and model weights for "Deep learning-driven fragment ion series classification enables highly precise and sensitive de novo peptide sequencing". This repository contains the following files: For the human dataset by Wang et al.: train_val_test_split.csv containing the mapping of the correct peptide by MaxQuant to either train, validation or test set psms_train_val_test.csv containing the mapping of correct PSMs (scan number, raw file and correct peptide by MaxQuant) to either train, validation or test set updated_spectralis_test_out.csv as before containing Spectralis-EA predictions and scores on test set, as well as initial peptides and scores by Casanovo and Novor and now containing also correct peptides by MaxQuant and Spectralis-scores on the combination of Casanovo and Novor sequences (column named spectralis_score_onlyRescoring) spectralis_test_out_heart_analysis.csv subset of 20220822_spectralis_test_out.csv containing only PSMs for the tissue heart with the computation of precision and recall values spectralis_test_out_pointnovo_deepnovo.csv containing predictions by DeepNovo and PointNovo with original scores and Spectralis-score, as well as correct peptides by MaxQuant For the nine-species dataset by Tran et al.: spectralis_ninespecies_out.csv containing spectrum identifiers, correct peptides by PEAKSDB, predicted peptides by the different de novo sequencing tools as well as original scores and Spectralis-scores for the different PSMs.
DOI: 10.15468/dl.hd555z
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Sinocarum bellum (C.B.Clarke) Pimenov & Kljuykov)",
 {
 "or" : [
 "Country is China",
 "Country is Chinese Taipei"
 ]
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031793-240906103802322/datasets/export for details.
DOI: 10.5281/zenodo.13782981
title: The central role of oxo clusters in zirconium-based esterification catalysis

description: Data of the figures in the publication "The central role of oxo clusters in zirconium-based esterification catalysis".DOI: https://doi.org/10.1002/smsc.202400369

The .pxp documents contain the experimental data of the figures in the manuscript and SI and they can be opened/edited with the software IGOR Pro 6.3 or higher.

 

Figure 1: Structural representation of catalysts used in this article. A) Nanocrystal (ZrO2 ), B) Metal-organic framework (UiO-66), (C) Zr6 oxo cluster (Zr6-acetate) and D) Zr12 oxo cluster (Zr12-acetate)

Figure 2: Catalytic esterification of oleic acid with ethanol in ortho-dichlorobenzene (o-DCB). The catalyst is either Zr12-oleate, ZrO2 nanocrystals or the MOF UiO-66. The reactions were performed in triplicate.

Figure 3: Catalytic esterification, comparing Zr12 oxo clusters and UiO-66, for different carboxylic acid substrates. The conditions are identical to Figure 1: 120 °C, 12 mol% zirconium, 0.2 M carboxylic acid, molecular sieves, and four equivalents of ethanol.

Figure 4: Catalytic esterification of oleic acid with hexanol. The reaction is either done in mesitylene (using four equivalents hexanol), without mesitylene (using four equivalents hexanol), or without mesitylene and a reduced 1.2 equivalents of hexanol. In the latter case, we recovered the catalyst and used this for a second catalytic reaction. The dotted line corresponds to the maximum yield that can be obtained when excluding the oleate ligands on the catalyst surface.

Figure 5: PDF refinement for A) Zr12-oleate cluster before catalysis, and after the first and second round of catalysis, B) and for catalyst recovered after 30 min with and without molecular sieves using Zr(OR)4 as the catalyst. The values in square brackets correspond to the ratio of monomer to dimer-cluster in the fit. The refinement is performed using both Zr6- and Zr12-propionate structures obtained from the single crystal structure (CCDC 604529).

Figure S1 - S24: Figures from Supporting Information.
DOI: 10.5281/zenodo.13782982
title: The central role of oxo clusters in zirconium-based esterification catalysis

description: Data of the figures in the publication "The central role of oxo clusters in zirconium-based esterification catalysis".DOI: https://doi.org/10.1002/smsc.202400369

The .pxp documents contain the experimental data of the figures in the manuscript and SI and they can be opened/edited with the software IGOR Pro 6.3 or higher.

 

Figure 1: Structural representation of catalysts used in this article. A) Nanocrystal (ZrO2 ), B) Metal-organic framework (UiO-66), (C) Zr6 oxo cluster (Zr6-acetate) and D) Zr12 oxo cluster (Zr12-acetate)

Figure 2: Catalytic esterification of oleic acid with ethanol in ortho-dichlorobenzene (o-DCB). The catalyst is either Zr12-oleate, ZrO2 nanocrystals or the MOF UiO-66. The reactions were performed in triplicate.

Figure 3: Catalytic esterification, comparing Zr12 oxo clusters and UiO-66, for different carboxylic acid substrates. The conditions are identical to Figure 1: 120 °C, 12 mol% zirconium, 0.2 M carboxylic acid, molecular sieves, and four equivalents of ethanol.

Figure 4: Catalytic esterification of oleic acid with hexanol. The reaction is either done in mesitylene (using four equivalents hexanol), without mesitylene (using four equivalents hexanol), or without mesitylene and a reduced 1.2 equivalents of hexanol. In the latter case, we recovered the catalyst and used this for a second catalytic reaction. The dotted line corresponds to the maximum yield that can be obtained when excluding the oleate ligands on the catalyst surface.

Figure 5: PDF refinement for A) Zr12-oleate cluster before catalysis, and after the first and second round of catalysis, B) and for catalyst recovered after 30 min with and without molecular sieves using Zr(OR)4 as the catalyst. The values in square brackets correspond to the ratio of monomer to dimer-cluster in the fit. The refinement is performed using both Zr6- and Zr12-propionate structures obtained from the single crystal structure (CCDC 604529).

Figure S1 - S24: Figures from Supporting Information.
DOI: 10.15468/dl.ed6j7s
title: Occurrence Download

description: A dataset containing 678557 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Macro-moth distribution records for the UK from Butterfly Conservation, up to 2019",
 "GadmGid is GBR.1.87_1"
 ]
}

 The dataset includes 678557 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031761-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccpm19m
title: CCDC 643910: Experimental Crystal Structure Determination

description: Related Article: J.McGinley, J.F.Gallagher, B.Murray, B.Creaven|2007|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.