cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17311570
title: Open European offshore wind turbine database

description: An open  European offshore wind turbine database for mesoscale modelling of European offshore wind farms is presented, containing all operating wind farms as of commissioning date before August 2025. The approach integrates turbine locations from the OpenStreetMap [1] and EMODnet [2] with metadata on turbine and wind farm properties from additional public sources.

The turbine information is augmented with generic thrust and power curves calculated via the pyWake [3] turbine generator [4].

References[1] OpenStreetMap contributors (2025). Distributed under the Open Database License (ODbL)[2] https://emodnet.ec.europa.eu/geoviewer/ [3] Mads M. Pedersen, Alexander Meyer Forsting, Paul van der Laan, Riccardo Riva, Leonardo A. Alcayaga Romàn, Javier Criado Risco, Mikkel Friis-Møller, Julian Quick, Jens Peter Schøler Christiansen, Rafael Valotta Rodrigues, Bjarke Tobias Olsen and Pierre-Elouan Réthoré. (2023, February). PyWake 2.5.0: An open-source wind farm simulation tool. https://gitlab.windenergy.dtu.dk/TOPFARM/PyWake, DTU Wind, Technical University of Denmark.[4] https://topfarm.pages.windenergy.dtu.dk/PyWake/notebooks/WindTurbines.html
DOI: 10.5281/zenodo.17311571
title: Open European offshore wind turbine database

description: An open  European offshore wind turbine database for mesoscale modelling of European offshore wind farms is presented, containing all operating wind farms as of commissioning date before August 2025. The approach integrates turbine locations from the OpenStreetMap [1] and EMODnet [2] with metadata on turbine and wind farm properties from additional public sources.

The turbine information is augmented with generic thrust and power curves calculated via the pyWake [3] turbine generator [4].

References[1] OpenStreetMap contributors (2025). Distributed under the Open Database License (ODbL)[2] https://emodnet.ec.europa.eu/geoviewer/ [3] Mads M. Pedersen, Alexander Meyer Forsting, Paul van der Laan, Riccardo Riva, Leonardo A. Alcayaga Romàn, Javier Criado Risco, Mikkel Friis-Møller, Julian Quick, Jens Peter Schøler Christiansen, Rafael Valotta Rodrigues, Bjarke Tobias Olsen and Pierre-Elouan Réthoré. (2023, February). PyWake 2.5.0: An open-source wind farm simulation tool. https://gitlab.windenergy.dtu.dk/TOPFARM/PyWake, DTU Wind, Technical University of Denmark.[4] https://topfarm.pages.windenergy.dtu.dk/PyWake/notebooks/WindTurbines.html
DOI: 10.5061/dryad.5b7n3
title: Data from: Morphometric analysis of inter- and intraspecific variation in the Cambrian helcionelloid mollusc Mackinnonia

description: Phylogenetic relationships within the helcionelloids have been difficult
 to establish. One of the reasons for this is that qualitative approaches
 to investigating morphological variation in this group have struggled to
 identify clear patterns. An alternative method of identifying these
 patterns is to study these organisms quantitatively. Here this approach is
 exemplified by employing morphometric methods to investigate patterns of
 subtle morphological variation in two species of Mackinnonia Runnegar in
 Bengtson et al from Cambrian Series 2, Stages 3–4. Specifically, a
 combination of elliptical Fourier and multivariate analyses were conducted
 to study intra- and interspecific variation in protoconch form as well as
 variation in ontogenetic trajectory of the teleoconch of two species of
 Mackinnonia. The material used consists of two assemblages of Mackinnonia
 rostrata (Zhou & Xiao), from the Shackleton Limestone of
 Antarctica and Ajax Limestone of Australia, and an assemblage of
 Mackinnonia taconica (Landing & Bartowski) from the Bastion
 Formation of Greenland. Results of this study show significant
 (p&lt;0.0001) differences in protoconch shape between all three
 groups. Ontogenetic sequences of outline curves truncated at successive
 rugae significantly (p&lt;0.05) discriminate between M. rostrata and
 M. taconica. These techniques uncovered significant intraspecific
 morphological variation of disparate assemblages of M. rostrata despite
 shared qualitative features and structure a conceptual framework for
 understanding such patterns of variation and put this in the context of
 the incipient species concept.
description: Ontogeny
 dataset.jmp file (type used in
 analysis in JMP software) including EFA residuals and PCA results for all
 data including for each rib and protoconchs of all
 data.Ontogeny
 dataset.csv file including EFA
 residuals and PCA results for all data including for each rib and
 protoconchs of all data.Protoconch
 dataset.jmp file (type used in
 analysis in JMP software) including EFA residuals and PCA results for
 protoconch data onlyProtoconch
 dataset.csv file including EFA
 residuals and PCA results for protoconch data only
DOI: 10.5061/dryad.2n1dd47
title: Data from: The epidemiology of avian pox and interaction with avian malaria in Hawaiian forest birds

description: Despite the purported role of avian pox (Avipoxvirus spp.) in the decline
 of endemic Hawaiian birds, few studies have been conducted on the dynamics
 of this disease, its impact on free-living avian populations, or its
 interactions with avian malaria (Plasmodium relictum). We conducted four
 longitudinal studies of 3-7 years in length and used generalized linear
 models to evaluate cross–sectional prevalence of active pox infection and
 individuals with healed deformities that had recovered from pox. Our goal
 was to understand how species, season, elevation, malaria infection, and
 other biological characteristics influenced pox infection in ‘Apapane,
 Hawai`i ‘Amakihi, ‘I‘iwi, and Japanese White-eye across low-, mid-, and
 high-elevation forests on the island of Hawai`i. We also used multi-state
 capture-recapture (longitudinal) models to estimate pox infection rates,
 recovery rates, and potential pox-related mortality. Pox infection rates
 were typically highest in low-elevation forests, followed by mid
 elevation, and lowest in high-elevation forests. We also found seasonal
 changes in pox prevalence throughout the annual cycle; typically
 increasing from spring through summer, peaking in fall, and declining in
 winter. These seasonal changes occurred in low- and mid-elevation forests,
 but not in high elevations where pox infection was low. Seasonal and
 elevation patterns of pox infection are like those for avian malaria,
 strongly implicating mosquito vectors, rather than other biting arthropods
 or contact transmission, as the primary source of transmitting both
 diseases. Most native Hawaiian birds recovered from pox infection within 6
 months; frequently without permanent lesions. Contrary to our
 expectations, we found no direct evidence that pox is a substantial
 mortality factor in any of the three native bird species we studied. Birds
 with chronic malaria infection were more likely to have both active pox
 infection and healed pox lesions suggesting a synergistic interaction that
 may influence the evolution of pox virulence. Because pox infection can be
 assessed visually, and birds have a high recovery rate, this disease may
 be a sensitive indicator of the seasonal and annual risk of transmission
 of malaria in Hawai`i.
description: Pox
 DataFile 1: Pox Data This
 Excel Worksheet contains the capture records for birds used in this study.
 The file is sorted by Site, Species, Bandno, and Date. Columns in the
 dataset are defined in the Readme file.
DOI: 10.5061/dryad.rd46vq3
title: Data from: A synthesis of animal-mediated seed dispersal of palms reveals distinct biogeographic differences in species interactions

description: Aim: To synthesize published knowledge on palm-frugivore seed dispersal
 observations and to test whether broad-scale differences in geographic
 coverage, diversity, composition and functional structure of plant-animal
 interactions emerge between biogeographic regions. Location: Neotropics
 and Afrotropics. Methods: We constructed a meta-network for both regions
 by aggregating observations of pairwise palm-frugivore interactions from
 the primary literature. We assessed sampling completeness with
 accumulation curves and estimated knowledge gaps for individual palm
 species and geographic units within biogeographic regions. We compared the
 taxonomic composition as well as structural indices of regional
 interaction networks and tested whether functional trait matching (i.e.
 the relationship between palm fruit size and frugivore body size) differs
 between regions. Results: A total of 750 unique pairwise interaction
 records were retrieved from the primary literature covering 340 frugivores
 and 126 palms. Sampling completeness of frugivore interactions within
 biogeographic regions and for individual palm species was low (often
 &lt;50%), geographic coverage limited, and relative knowledge gaps
 were largest in areas with high palm species richness. Interaction
 diversity and network modularity was larger in the Neotropics than the
 Afrotropics. A positive fruit size-body mass relationship (i.e. functional
 trait matching) was statistically significant in the Afrotropics, but not
 in the Neotropics. Main conclusions: Available data on palm-frugivore
 interactions suggest major biogeographic differences in ecological
 networks among regions, even when taking differences in palm species
 richness into account. The Neotropics showed a larger interaction
 diversity and more modular network structure than the Afrotropics.
 Broad-scale morphological trait matching among plants and frugivores was
 only observed in the Afrotropics. The lack of a Neotropical trait matching
 relationship might be driven by the late Quaternary extinctions of
 mammalian megafauna in this region. Although our work has increased the
 digital availability of palm-frugivore interaction observations, massive
 knowledge gaps of interaction diversity remain in the tropics.
description: PalmFrugDatasetOCT2018Dataset containing species interaction records of palm-frugivore seed dispersal observations from the Neotropics and AfrotropicsReferencesDatasetFile with reference source of the interaction records reported in the dataset PalmFrugDatasetOCT2018.csv
DOI: 10.5061/dryad.8955
title: Data from: Gene flow between wheat and wild relatives: empirical evidence from Aegilops geniculata, Ae. neglecta and Ae. triuncialis

description: Gene flow between domesticated species and their wild relatives is
 receiving growing attention. The present study addressed introgression
 between wheat and natural populations of its wild relatives (Aegilops
 species). The sampling included 472 individuals, collected from 32
 Mediterranean populations of three widespread Aegilops species
 (Ae. geniculata, Ae. neglecta and
 Ae. triuncialis), and compared wheat field borders to areas
 isolated from agriculture. Individuals were characterized with AFLP
 fingerprinting, analysed through two computational approaches (i.e.
 Bayesian estimations of admixture and fuzzy clustering), and sequences
 marking wheat-specific insertions of transposable elements. With this
 combined approach, we detected substantial gene flow between wheat and
 Aegilops species. Specifically, Ae. neglecta and
 Ae. triuncialis showed significantly more admixed individuals
 close to wheat fields than in locations isolated from agriculture. In
 contrast, little evidence of gene flow was found in
 Ae. geniculata. Our results indicated that reproductive barriers
 have been regularly bypassed during the long history of sympatry between
 wheat and Aegilops.
description: AFLPdata_Aegilops_Wheat
DOI: 10.5061/dryad.4cv02
title: Data from: Genetic consequences of population expansions and contractions in the common hippopotamus (Hippopotamus amphibius) since the Late Pleistocene

description: Over the past two decades, an increasing amount of phylogeographic work
 has substantially improved our understanding of African biogeography, in
 particular the role played by Pleistocene pluvial–drought cycles on
 terrestrial vertebrates. However, still little is known on the
 evolutionary history of semi-aquatic animals, which faced tremendous
 challenges imposed by unpredictable availability of water resources. In
 this study, we investigate the Late Pleistocene history of the common
 hippopotamus (Hippopotamus amphibius), using mitochondrial and nuclear DNA
 sequence variation and range-wide sampling. We documented a global
 demographic and spatial expansion approximately 0.1–0.3 Myr ago, most
 likely associated with an episode of massive drainage overflow. These
 events presumably enabled a historical continent-wide gene flow among
 hippopotamus populations, and hence, no clear continental-scale genetic
 structuring remains. Nevertheless, present-day hippopotamus populations
 are genetically disconnected, probably as a result of the mid-Holocene
 aridification and contemporary anthropogenic pressures. This unique
 pattern contrasts with the biogeographic paradigms established for
 savannah-adapted ungulate mammals and should be further investigated in
 other water-associated taxa. Our study has important consequences for the
 conservation of the hippo, an emblematic but threatened species that
 requires specific protection to curtail its long-term decline.
description: XML file for molecular
 calibration analysisXML file used in BEAST
 for the molecular calibration analysis of CR H. amphibius sequences, using
 the split with H. liberiensis (sequence OGR) as a
 reference.MolecularCalibration.xmlXML for EBSP analysisXML file used in BEAST for the Extended Bayesian Skyline Plot (EBSP) analysis of H. amphibius, based on control region, cytochrome-b and nuclear HMG-2 sequencesEBSP.xmlCodes used for EBSP simulation analysesSet of codes used for generating simulated datasets and performing EBSP analyses. File "ms_beast.R" runs the coalescent simulator MS (via package "phyclust" providing a R version of MS) to generate sequences from the template file "testalt_template" and create XML input files for use in BEAST. File "run.sh" runs these XML inputs in BEAST. File "plots.R" is used to visualize generated skyline plots.EBSP_simulations.zipSequence alignmentsFASTA alignments of all H. amphibius' sequences included in this study: mitochondrial control region ("Hippo_CR_all.fas"), cytochome-B ("Hippo_cytB_all.fas") and nuclear HMG-2 (Hippo_Nucl_all.fas"). Taxon ID are listed in Supplementary Table S1.SequenceAlignments.zip
DOI: 10.5061/dryad.tf45v
title: Data from: Land cover diversity increases predator aggregation and consumption of prey

description: A lower diversity of land cover types is purported to decrease arthropod
 diversity in agroecosystems and is dependent on patterns of land use and
 fragmentation. Ants, important providers of ecosystem services such as
 biological control, are susceptible to landscape-level changes. We
 determined the relationships between land cover diversity and
 fragmentation on the within-field spatial associations of ants to pests
 and resulting predation events by combining mapping and molecular tools.
 Increased land cover diversity and decreased fragmentation increased ant
 abundance, spatial association to pests and predation. Land cover
 diversity and fragmentation were more explanatory than land cover types.
 Even so, specific land cover types, such as deciduous forest, influenced
 ant and pest diversity more so than abundance. These results indicate that
 geospatial techniques and molecular gut content analysis can be combined
 to determine the role of land use in influencing predator–prey
 interactions and resulting predation events in agroecosystems.
description: Penn et
 al_ELE_FinalDataAll arthropod
 information gathered in the field. Landscape data collected from USDA NASS
 Crop Data Layer. Definitions included in excel
 spreadsheet.
DOI: 10.6073/pasta/d119678ff4ff2097087475aeb1862f04
title: Plant functional traits in the black sand extended growing season experiment, 2023.

description: Climate change is predicted to affect the alpine at a more rapid rate than other ecosystems. One predicted consequence is earlier snowmelt, which the Niwot Ridge LTER site Black Sand experiment aimed to replicate. Black sand was hand-spread across the early snowmelt treatment to cause a more rapid snowmelt than in the control plots. Sand was still spread across the control plots after snowmelt to control for the effects of the sand on vegetation. Each treatment also contained ITEX chambers which raised the temperature of individual plots. Within this larger experiment, we measured plant functional traits to see if they varied across the four treatments: control, control + ITEX, early snowmelt, and early snowmelt + ITEX.
DOI: 10.5061/dryad.5781r
title: Data from: Maternal egg hormones in the mating context: the effect of pair personality

description: Animal personality traits emerge developmentally from the interaction of
 genetic and early environmental factors. Maternal hormones, such as
 androgens (testosterone, T and androstenedione, A4), transferred to
 embryos and egg yolks may simultaneously organize multiple behavioural and
 physiological traits. Whereas previous studies demonstrated an association
 between the mother's personality and yolk androgen levels, the
 independent effects of the male partner's personality and pair
 combination are unknown. We test this association using an ecological
 model species for personality research, the great tit (Parus major) using
 multiple approaches: 1) a wild population, 2) a randomly-mated captive
 population, and 3) an experimental study with (dis)assortatively mated
 pairs from lines selected for fast exploration/boldness or slow
 exploration/shyness. Egg androgen concentrations were associated with
 variation in female personality traits, and the experimental data
 suggested that this is independent of male personality: experimental
 females from slow-shy line tended to have higher egg T concentrations than
 females from the fast-bold line, with no effect of male personality. Shy
 females from the wild population had higher egg A4 concentration than bold
 females. However, in the correlative data yolk hormones were linked with
 male personality, as well as the interaction between female and male
 traits and yolk androgen levels: Male handling responsiveness correlated
 negatively with egg A4 concentration in wild birds. In randomly-mated
 birds, pairs that were mated assortatively for personality had lower egg T
 concentrations than disassortatively mated pairs. Given that egg androgens
 are known mediators of avian personality, our results suggest that
 maternal hormones might contribute to the heritability of personality, may
 be sensitive to the social context of mating, and act as key drivers of
 individual differences.
description: Ruuskanen_FE2017_dataData for Ruuskanen et al. FE 2017
DOI: 10.5061/dryad.g763q
title: Data from: Postzygotic isolation involves strong mitochondrial and sex-specific effects in Tigriopus californicus, a species lacking heteromorphic sex chromosomes

description: Detailed studies of the genetics of speciation have focused on a few model
 systems, particularly Drosophila. The copepod Tigriopus californicus
 offers an alternative that differs from standard animal models in that it
 lacks heteromorphic chromosomes (instead, sex determination is polygenic)
 and has reduced opportunities for sexual conflict, because females mate
 only once. Quantitative trait loci (QTL) mapping was conducted on
 reciprocal F2 hybrids between two strongly differentiated populations,
 using a saturated linkage map spanning all 12 autosomes and the
 mitochondrion. By comparing sexes, a possible sex ratio distorter was
 found but no sex chromosomes. Although studies of standard models often
 find an excess of hybrid male sterility factors, we found no QTL for
 sterility and multiple QTL for hybrid viability (indicated by
 non-Mendelian adult ratios) and other characters. Viability problems were
 found to be stronger in males, but the usual explanations for weaker
 hybrid males (sex chromosomes, sensitivity of spermatogenesis, sexual
 selection) cannot fully account for these male viability problems.
 Instead, higher metabolic rates may amplify deleterious effects in males.
 Although many studies of standard speciation models find the strongest
 genetic incompatibilities to be nuclear–nuclear (specifically X
 chromosome–autosome), we found the strongest deleterious interaction in
 this system was mito–nuclear. Consistent with the snowball theory of
 incompatibility accumulation, we found that trigenic interactions in this
 highly divergent cross were substantially more frequent (&gt;6 × )
 than digenic interactions. This alternative system thus allows important
 comparisons to studies of the genetics of reproductive isolation in more
 standard model systems.
description: t_californicus_rqtl_fileFile used for rqtl, including marker linkage data, individual marker data (allele by population of origin, or heterozygote), phenotypic data (measured in the lab), mitochondrial background and sex.t_californicus_raw_morphodataThis contains the raw developmental and morphological data, as well as the transformed and mean-corrected values
DOI: 10.5061/dryad.p9s05
title: Data from: Movements of four native Hawaiian birds across a naturally fragmented landscape

description: Animals often increase their fitness by moving across space in response to
 temporal variation in habitat quality and resource availability, and as a
 result of intra and inter-specific interactions. The long-term persistence
 of populations and even whole species depends on the collective patterns
 of individual movements, yet animal movements have been poorly studied at
 the landscape level. We quantified movement behavior within four native
 species of Hawaiian forest birds in a complex lava-fragmented landscape:
 Hawai‛i ‘Amakihi (Chlorodrepanis virens), ‘Oma‘o (Myadestes obscurus),
 ‘Apapane (Himatione sanguinea), and ‘I‘iwi (Drepanis coccinea). We
 evaluated the relative importance of six potential intrinsic and extrinsic
 drivers of movement behavior and patch fidelity: 1) forest fragment size,
 2) the presence or absence of invasive rats (Rattus sp.), 3) season, 4)
 species, 5) age, and 6) sex. The study was conducted across a landscape of
 34 forest fragments varying in size from 0.07 to 12.37 ha, of which 16 had
 rats removed using a treatment-control design. We found the largest
 movements in the nectivorous ‘Apapane and ‘I‘iwi, intermediate levels in
 the generalist Hawai‛i ‘Amakihi, and shortest average movement for the
 ‘Oma‘o, a frugivore. We found evidence for larger patch sizes increasing
 patch fidelity only in the ‘Oma‘o, and an effect of rat-removal increasing
 patch fidelity of Hawai‛i ‘Amakihi only after two years of rat-removal.
 Greater movement during the non-breeding season was observed in all
 species, and season was an important factor in explaining higher patch
 fidelity in the breeding season for ‘Apapane and ‘I‘iwi. Sex was important
 in explaining patch fidelity in ‘Oma‘o only, with males showing higher
 patch fidelity. Our results provide new insights into how these native
 Hawaiian species will respond to a changing environment, including habitat
 fragmentation and changing distribution of threats from climate change.
description: Knowlton et al. JAB
 DATAAll birds banded,
 resights and recaptures, including when and where and distances
 moved.