cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.3m00k
title: Data from: Adaptation, clonal interference, and frequency-dependent interactions in a long-term evolution experiment with Escherichia coli

description: Twelve replicate populations of Escherichia coli have been evolving in the
 laboratory for &gt;25 years and 60,000 generations. We analyzed
 bacteria from whole-population samples frozen every 500 generations
 through 20,000 generations for one well-studied population, called Ara−1.
 By tracking 42 known mutations in these samples, we reconstructed the
 history of this population’s genotypic evolution over this period. The
 evolutionary dynamics of Ara−1 show strong evidence of selective sweeps as
 well as clonal interference between competing lineages bearing different
 beneficial mutations. In some cases, sets of several mutations approached
 fixation simultaneously, often conveying no information about their order
 of origination; we present several possible explanations for the existence
 of these mutational cohorts. Against a backdrop of rapid selective sweeps
 both earlier and later, two genetically diverged clades coexisted for
 &gt;6000 generations before one went extinct. In that time, many
 additional mutations arose in the clade that eventually prevailed. We show
 that the clades evolved a frequency-dependent interaction, which prevented
 the immediate competitive exclusion of either clade, but which collapsed
 as beneficial mutations accumulated in the clade that prevailed. Clonal
 interference and frequency dependence can occur even in the simplest
 microbial populations. Furthermore, frequency dependence may generate
 dynamics that extend the period of coexistence that would otherwise be
 sustained by clonal interference alone.
description: Ara-1_GenotypingThis file contains all data, analysis scripts, and preliminary results and analysis related to Veracode Genotyping of Ara-1 from 0 to 20,000 generations of E. coli evolution.Ara-1_Frequency_DependenceThis file contains plate counts, analysis scripts, and preliminary figures related to the frequency-dependent selection in Ara-1 between 10,000 and 15,000 generations.
DOI: 10.5061/dryad.49g98
title: Data from: Molecular phylogeny of the diverse parasitoid wasp genus Ophion Fabricius (Hymenoptera: Ichneumonidae: Ophioninae)

description: Ophion Fabricius is a diverse genus of nocturnal ichneumonid wasps
 (Insecta: Hymenoptera) that is particularly species-rich in temperate
 areas, yet has received little taxonomic attention in the Holarctic
 region, where most species occur. While there have been some attempts to
 divide Ophion into monophyletic species groups, the vast majority of
 species have been lumped into a single, paraphyletic group, the O. luteus
 species group, which is defined only by the lack of characters specific to
 the other groups. The challenging morphology of this large catch-all group
 has limited attempts to subdivide it, and no phylogenetic hypothesis has
 been proposed for the genus as a whole. In this study, we use DNA sequence
 data [28S ribosomal RNA (28S), cytochrome oxidase 1 (COI) and internal
 transcribed spacer 2 (ITS2)] to present the first molecular phylogeny of
 Ophion. We also describe the secondary structure of ITS2 for the first
 time in Ichneumonidae, and explore its implications for phylogeny
 estimation. We define 13 species groups, nine of which were previously
 considered part of the O. luteus species group s.l. The included species
 groups are the O. minutus, O. areolaris, O. scutellaris, O. flavidus, O.
 parvulus, O. slossonae, O. nigrovarius, O. pteridis, O. luteus s.s., and
 O. obscuratus species groups, along with three groups lacking described
 species (Species group 1, New Zealand group, Madagascar group). This study
 provides a framework for future studies of this diverse and
 morphologically challenging genus.
description: COI sequence
 matrixNexus file with COI
 sequence matrix used in phylogenetic analysesCOI_alignment.nexITS2 sequence matrixNexus file with ITS2 sequence matrix used in phylogenetic analysesITS2_alignment.nex28S sequence matrixNexus file with 28S (D2-D3 region) sequence matrix used in phylogenetic analyses28S_alignment.nexConcatenated sequence matrixConcatenated sequence matrix for taxa with all loci presentConcatenated_common.nexConcatenated_allConcatenated sequence matrix for all taxa and all loci
DOI: 10.5061/dryad.ch656
title: Data from: Daytime solar heating controls downy mildew Peronospora belbahrii in sweet basil

description: The biotrophic oomycete Peronospora belbahrii causes a devastating downy
 mildew disease in sweet basil. Due to the lack of resistant cultivars
 current control measures rely heavily on fungicides. However, resistance
 to fungicides and strict regulation on their deployment greatly restrict
 their use. Here we report on a ‘green’ method to control this disease.
 Growth chamber studies showed that P. belbahrii could hardly withstand
 exposure to high temperatures; exposure of spores, infected leaves, or
 infected plants to 35-45°C for 6-9 hours suppressed its survival.
 Therefore, daytime solar heating was employed in the field to control the
 downy mildew disease it causes in basil. Covering growth houses of sweet
 basil already infected with downy mildew with transparent
 infra-red-impermeable, transparent polyethylene sheets raised the daily
 maximal temperature during sunny hours by 11-22°C reaching 40-58°C
 (greenhouse effect). Such coverage, applied for a few hours during 1-3
 consecutive days, had a detrimental effect on the survival of P.
 belbahrii: killing the pathogen and/or suppressing disease progress while
 enhancing growth of the host basil plants.
description: fig 1Fig 1. 15.11.2013 b kill
 mycelium in leaves JMPkill mycelium in leaves
 JMPFig 2. 20.9.2013 basil
 heat to branches JMPabasil heat to branches
 JMPaFig.3. 10.11.2013 a
 basil attached spores in 100%RHbasil attached spores in
 100%RHFig.4. 9.11.2013
 attached spores in ambient RH jmp 3ttached spores in
 ambient RH jmp 3fwddryaddatapackagereceivedforreviewdoi10_5061dry.zipFig 5. 27.9.2013 2.5.2012 23.10.2012 dispersed spores in vivo jmpFig.4. 9.11.2013 attached spores in ambient RH jmp 3Fig. 6. 8.12.2013 wet-dry spores heatFig 8. 26.11.2013 heat shock BR3 BR6 JMPaFig 7. 17.3.2014. Attached spores RHsFig.9. 9.4.2014 Basil fungicides and heatFig 10. 11.5.2014 Houses A-E.Fig.11. 7.6..2014 small houses heatingFig 12. 22.6.2014Fig 13. 12.8.2014 13.8.2014FIG 13. supplement .14.8.2014 House F
DOI: 10.5061/dryad.pq075
title: Data from: High genetic variation and moderate to high values for genetic parameters of Picea abies resistance to Pissodes strobi

description: Genetic parameters of Picea abies resistance to the white pine weevil
 (Pissodes strobi Peck) were estimated from 193 full-sib and 166 half-sib
 families in six 10-year-old progeny trials. The estimated family and
 individual heritability values for the cumulative weevil attack rate
 between ages 6 and 10 (CWA6–10) were high and moderate for both full-sib
 families (0.61 and 0.28, respectively) and half-sib families (0.85 and
 0.40, respectively), indicating strong genetic control for this trait in
 Norway spruce. The fact that specific combining ability (SCA) variance
 represents 35 % of the general combining ability (GCA) variance suggests
 that non-additive (dominant) effects are weak. The strong type B
 correlations found for CWA6–10 (rˆB=0.96 for full-sib families and
 rˆB=0.81 for half-sib families) indicate that family ranks were stable
 across sites. For three of the five sites with high attack levels, genetic
 correlations were not significant between CWA6–10 and tree height at age
 5. Moderate positive genetic correlations were detected between CWA6–10
 and tree diameter at age 10 (rˆA from 0.29 to 0.60), but specific families
 showing both high resistance and good diameter growth can be found. These
 results suggest that the genetic improvement of Norway spruce for
 resistance to white pine weevil can be achieved successfully without
 adversely affecting growth.
description: File_full_sibsFile_half_sibsFile_LAR
DOI: 10.15468/dl.bb37ra
title: Occurrence Download

description: A dataset containing 238 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Agathis philippinensis"
 ]
}

 The dataset includes 238 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001635-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7sajg
title: Occurrence Download

description: A dataset listing the 36 species recorded in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "RecordedBy is one of (Du Chaillu, Du Chaillu Coll., Du Chaillu P.B., Du Chaillu P.B.?, du Chaillu)"
 ]
}

 The dataset's 36 records were derived from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001613-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fprrx8
title: Occurrence Download

description: A dataset containing 17676 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is c0758a16-296b-4ec3-97fd-8a057d9060f3",
 "TypeStatus is Type"
 ]
}

 The dataset includes 17676 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005354-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15778/resif.1a2009
title: ArLiTA : Architecture de la Lithosphère de Terre Adélie, Antarctique, code 1A, funded and instrumented by IPEV, CNRS-INSU, RESIF-SISMOB, Laboratoire Magmas et Volcans (UMR 6524), Université de Saint Etienne, Université de La Réunion, IPGP

description: ArLiTA aims at characterizing the structures and the deformation patterns of the Terre Adélie and George V Land (East Antarctica: 135 to 145° E). The ArLiTA project includes multidisciplinary approaches and combines various analyses and interpretation methods, in order to relate field observations to geodynamic models. Those includes studies from the crystal scale to regional structures mapped by seismological data analysis and includes measurement of the anisotropy of magnetic susceptibility (AMS) to map the deformation patterns (foliation, lineation) of the different crustal blocks from the Neoarchean and Paleoproterozoic crustal segments. ArLiTA project also includes petrological and geochemical analyses to investigate relationships between the deformation structures and the transfers of geological fluids (silicate melts, hydrous or carbon-rich fluids, etc…) within the crust.
ArLiTA deployed four broad band three components seismic stations east of the GEOSCOPE station DRV located at the Dumont d’Urville French base. These stations were operating from Nov 2009 to Dec 2012 along the Terre Adélie and the George V Land coastal area and improves the instrumental coverage of East-Antarctica and of the Terre Adélie Craton (TAC). 
https://dossier.univ-st-etienne.fr/arlita/www/
DOI: 10.17866/rd.salford.30665549
title: The Omnipotence of Dream: 300 word statement

description: This is the 300 word statement that provides an overview for The Omnipotence of Dream collection.
DOI: 10.17866/rd.salford.30665549.v1
title: The Omnipotence of Dream: 300 word statement

description: This is the 300 word statement that provides an overview for The Omnipotence of Dream collection.
DOI: 10.15468/dl.q5d7cw
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Living Specimen)",
 "TaxonKey is Elusor macrurus"
 ]
}

 The dataset includes 79 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005355-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2zpuha
title: Occurrence Download

description: A dataset containing 31410249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Switzerland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 31410249 records from 885 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005325-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17698432
title: XX_XXI. mendeetako zerrendak
DOI: 10.5517/ccdc.csd.cc2c09f4
title: CCDC 2175035: Experimental Crystal Structure Determination

description: Related Article: Chengming Li,  Weihua Zhuang,  Yongjie Zhou,  Linfeng He,  Jiayin Yang,  Gang Xu,  Rongchuan Su,  Mao Chen,  Jingsong You|2025|Nat.Commun.|16|7330|doi:10.1038/s41467-025-62763-1
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fm5fp
title: CCDC 2252752: Experimental Crystal Structure Determination

description: Related Article: Rui Tang,  Shuo Xu,  Gang Cheng,  Kam-Hung Low,  Dongdong Zhang,  Lian Duan,  Chi-Ming Che|2025|Nat.Commun.|16|7776|doi:10.1038/s41467-025-62867-8
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hdsk8
title: CCDC 2306200: Experimental Crystal Structure Determination

description: Related Article: Yi-Jie Ding,  Sheng-Ye Zhang,  Ya-Ning Li,  Shu-Yang Yu,  Kongchanghao Huang,  Yuchen Zhang,  Jun-Fang Li,  Xiao-Yan Wang,  Yong Tang|2025|Nat.Commun.|61|6939|doi:10.1038/s41467-025-62145-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hdt0r
title: CCDC 2306214: Experimental Crystal Structure Determination

description: Related Article: Yi-Jie Ding,  Sheng-Ye Zhang,  Ya-Ning Li,  Shu-Yang Yu,  Kongchanghao Huang,  Yuchen Zhang,  Jun-Fang Li,  Xiao-Yan Wang,  Yong Tang|2025|Nat.Commun.|61|6939|doi:10.1038/s41467-025-62145-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2j3hrx
title: CSD 2327069: Experimental Crystal Structure Determination

description: Related Article: Jun Min Seo, Hongil Jo, Myung Ho Choi, Kang Min Ok, Hong Young Chang, Sun Woo Kim|2024|Crystals|14|197|doi:10.3390/cryst14020197
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2km28k
title: CCDC 2371818: Experimental Crystal Structure Determination

description: Related Article: Ya-Jie Wang,  Ke-Xin Zheng,  Yi-He Yu,  Zhengkun Xie,  Pengyao Xing,  Shuang-Quan Zang|2025|Nat.Commun.|61|7450|doi:10.1038/s41467-025-62816-5
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ktbvl
title: CCDC 2377850: Experimental Crystal Structure Determination

description: Related Article: Chengming Li,  Weihua Zhuang,  Yongjie Zhou,  Linfeng He,  Jiayin Yang,  Gang Xu,  Rongchuan Su,  Mao Chen,  Jingsong You|2025|Nat.Commun.|16|7330|doi:10.1038/s41467-025-62763-1
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l4ldr
title: CCDC 2387694: Experimental Crystal Structure Determination

description: Related Article: Yuhao Wang, Jinping Zhong, Fada Feng, Yikui Zeng, Dengfeng Yan, Xudong Li|2025|Nanoscale|17|25868|doi:10.1039/d5nr03175c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lm0fp
title: CCDC 2401552: Experimental Crystal Structure Determination

description: Related Article: Heng Yang,  Xiangke Zhang,  Fei-Yang Cao,  Yu-Heng Zhang,  Yan Pan,  Ye-Cheng Wang,  Mingji Dai,  Jian-Jun Dai|2025|Nat.Commun.|16|7706|doi:10.1038/s41467-025-63052-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lppdd
title: CCDC 2404124: Experimental Crystal Structure Determination

description: Related Article: Rebecca F. Sheppard,  Kevin Dollberg,  Nick Michel,  John A. Seed,  Ashley J. Wooles,  Jingzhen Du,  Carsten von Hänisch,  Stephen T. Liddle|2025|Nat.Commun.|16|7136|doi:10.1038/s41467-025-61612-5
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lppff
title: CCDC 2404125: Experimental Crystal Structure Determination

description: Related Article: Rebecca F. Sheppard,  Kevin Dollberg,  Nick Michel,  John A. Seed,  Ashley J. Wooles,  Jingzhen Du,  Carsten von Hänisch,  Stephen T. Liddle|2025|Nat.Commun.|16|7136|doi:10.1038/s41467-025-61612-5
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lppgg
title: CCDC 2404126: Experimental Crystal Structure Determination

description: Related Article: Rebecca F. Sheppard,  Kevin Dollberg,  Nick Michel,  John A. Seed,  Ashley J. Wooles,  Jingzhen Du,  Carsten von Hänisch,  Stephen T. Liddle|2025|Nat.Commun.|16|7136|doi:10.1038/s41467-025-61612-5
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lpphh
title: CCDC 2404127: Experimental Crystal Structure Determination

description: Related Article: Rebecca F. Sheppard,  Kevin Dollberg,  Nick Michel,  John A. Seed,  Ashley J. Wooles,  Jingzhen Du,  Carsten von Hänisch,  Stephen T. Liddle|2025|Nat.Commun.|16|7136|doi:10.1038/s41467-025-61612-5
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lppjj
title: CCDC 2404128: Experimental Crystal Structure Determination

description: Related Article: Rebecca F. Sheppard,  Kevin Dollberg,  Nick Michel,  John A. Seed,  Ashley J. Wooles,  Jingzhen Du,  Carsten von Hänisch,  Stephen T. Liddle|2025|Nat.Commun.|16|7136|doi:10.1038/s41467-025-61612-5
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lm0gq
title: CCDC 2401553: Experimental Crystal Structure Determination

description: Related Article: Heng Yang,  Xiangke Zhang,  Fei-Yang Cao,  Yu-Heng Zhang,  Yan Pan,  Ye-Cheng Wang,  Mingji Dai,  Jian-Jun Dai|2025|Nat.Commun.|16|7706|doi:10.1038/s41467-025-63052-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m19tt
title: CCDC 2414336: Experimental Crystal Structure Determination

description: Related Article: Ye Zheng,  Li Huang,  Chunlan Song,  Jiakun Li|2025|Nat.Commun.|61|6920|doi:10.1038/s41467-025-62093-2
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.