cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1259206
title: Fvb genome assembly of Fragaria vesca (wild strawberry)

description: This is an assembly of the Fragaria vesca (wild strawberry) reference genome, designated Fvb. Details are provided in: Tennessen JA, Govindarajulu R, Liston A, Ashman TL (2014) Evolutionary origins and dynamics of octoploid strawberry subgenomes revealed by dense targeted capture linkage maps. Genome Biol Evol. doi:10.1093/gbe/evu261
DOI: 10.6084/m9.figshare.1259128
title: Meta data for systematic review of HGH as a viable treatment in anti aging, disease therapy, athletic enhancement

description: Meta data for systematic review of HGH as a viable treatment in anti aging, disease therapy, athletic enhancement
DOI: 10.6084/m9.figshare.1259248.v2
title: Arsenic efflux from Microcystis aeruginosa under different phosphate regimes

description: Phytoplankton plays an important role in arsenic speciation, distribution, and cycling in<br>freshwater environments. Little information, however, is available on arsenic efflux from<br>the cyanobacteria Microcystis aeruginosa under different phosphate regimes. This<br>study investigated M. aeruginosa arsenic efflux and speciation by pre-exposing it to 10<br>μM arsenate or arsenite for 24 h during limited (12 h) and extended (13 d) depuration<br>periods under phosphate enriched (+P) and phosphate depleted (−P) treatments.<br>Arsenate was the predominant species detected in algal cells throughout the<br>depuration period while arsenite only accounted for no greater than 45% of intracellular<br>arsenic. During the limited depuration period, arsenic efflux occurred rapidly and only<br>arsenate was detected in solutions. During the extended depuration period, however,<br>arsenate and dimethylarsinic acid (DMA) were found to be the two predominant<br>arsenic species detected in solutions under −P treatments, but arsenate was the only<br>species detected under +P treatments. Experimental results also suggest that<br>phosphorus has a significant effect in accelerating arsenic efflux and promoting<br>arsenite bio-oxidation in M. aeruginosa. Furthermore, phosphorus depletion can<br>reduce arsenic efflux from algal cells as well as accelerate arsenic reduction and<br>methylation. These findings can contribute to our understanding of arsenic<br>biogeochemistry in aquatic environments and its potential environmental risks under<br>different phosphorus levels.
DOI: 10.6084/m9.figshare.1259248.v1
title: Arsenic efflux from Microcystis aeruginosa under different phosphate regimes

description: Phytoplankton plays an important role in arsenic speciation, distribution, and cycling in<br>freshwater environments. Little information, however, is available on arsenic efflux from<br>the cyanobacteria Microcystis aeruginosa under different phosphate regimes. This<br>study investigated M. aeruginosa arsenic efflux and speciation by pre-exposing it to 10<br>μM arsenate or arsenite for 24 h during limited (12 h) and extended (13 d) depuration<br>periods under phosphate enriched (+P) and phosphate depleted (−P) treatments.<br>Arsenate was the predominant species detected in algal cells throughout the<br>depuration period while arsenite only accounted for no greater than 45% of intracellular<br>arsenic. During the limited depuration period, arsenic efflux occurred rapidly and only<br>arsenate was detected in solutions. During the extended depuration period, however,<br>arsenate and dimethylarsinic acid (DMA) were found to be the two predominant<br>arsenic species detected in solutions under −P treatments, but arsenate was the only<br>species detected under +P treatments. Experimental results also suggest that<br>phosphorus has a significant effect in accelerating arsenic efflux and promoting<br>arsenite bio-oxidation in M. aeruginosa. Furthermore, phosphorus depletion can<br>reduce arsenic efflux from algal cells as well as accelerate arsenic reduction and<br>methylation. These findings can contribute to our understanding of arsenic<br>biogeochemistry in aquatic environments and its potential environmental risks under<br>different phosphorus levels.
DOI: 10.6084/m9.figshare.1259128.v1
title: Meta data for systematic review of HGH as a viable treatment in anti aging, disease therapy, athletic enhancement

description: Meta data for systematic review of HGH as a viable treatment in anti aging, disease therapy, athletic enhancement
DOI: 10.6084/m9.figshare.1259245.v2
title: PONE-D-14-41268

description: data
DOI: 10.6084/m9.figshare.1259069
title: STOCK OPTIONS: CONTROVERSIAL ASPECTS CONCERNING TAXATION IN THE FIELD OF EMPLOYMENT TAX AND INDIVIDUAL INCOME TAX

description: The agility of the modern corporate world has been leading corporations to seek ways<br>of stimulating the interest and loyalty of their employees, among those ways stands<br>the granting of employee stock options, a growing practice in Brazil. This paper aims,<br>primarily, the comprehension of this institution within the Brazilian legal system, so that<br>in a second stage one may analyze the potential tax implications of its use concerning<br>Social Contributions and Individual Income Tax, considering the lack of regulation in<br>the field of taxation. It also briefly exposes the north-american taxation systematics<br>regarding the monetary amounts that arise from employee stock options plans, as an<br>attempt to expose potential paths for the national legislator.
DOI: 10.6084/m9.figshare.1259245.v1
title: Data

description: PONE-D-14-41268R2
DOI: 10.6084/m9.figshare.1259069.v1
title: STOCK OPTIONS: CONTROVERSIAL ASPECTS CONCERNING TAXATION IN THE FIELD OF EMPLOYMENT TAX AND INDIVIDUAL INCOME TAX

description: The agility of the modern corporate world has been leading corporations to seek ways<br>of stimulating the interest and loyalty of their employees, among those ways stands<br>the granting of employee stock options, a growing practice in Brazil. This paper aims,<br>primarily, the comprehension of this institution within the Brazilian legal system, so that<br>in a second stage one may analyze the potential tax implications of its use concerning<br>Social Contributions and Individual Income Tax, considering the lack of regulation in<br>the field of taxation. It also briefly exposes the north-american taxation systematics<br>regarding the monetary amounts that arise from employee stock options plans, as an<br>attempt to expose potential paths for the national legislator.
DOI: 10.6084/m9.figshare.1259060
title: Excel file - systematic review support

description: Literature search methods: A systematic review was done in November 2014 using the databases Web of Science and Google Scholar to collect and analyse the primary literature to date written about tool use and tool making behaviour in non-human animals. The search for publications on Google Scholar was done using the search terms “tool+using+making+animals”, including only articles, written in a non-limited period of time, sorted by relevance. Since Google Scholar provided a large amount of articles in a descending order from more relevant to less relevant, we detected relevant articles doing a first manual scan looking at the title and at the abstract until relevance was consistent, producing a total of 23 possible publications.The search for literature that was executed using the database Web of Science was done using the search terms “Tool*” (Topic) AND “Use* OR Utilization*” (Topic) AND “Mak*” (Topic) AND “Animal*”(Topic). This produced a result of 316 possible publications. Then we refined the results using the following search categories: “Behavioral Sciences”, “Ecology”, “Zoology”. We also selected only articles. After that, 9 articles were left. Then these underwent a title and abstract scan for relevance to the specific topic. The full text of the remaining articles was processed, and the articles that did not provide specific information about the occurrence of tool use and/or tool behaviour in animals were excluded. We also excluded all the secondary literature as reviewed primary literature without providing its own data. Articles whose content was not focused on the specified topic and articles whose data provided were not enough were also excluded. Of the 339 initial publications, 32 were screened: 2 were removed for not being primary research articles, 24 were directly related to the topic, 6 were excluded with reasons listed above. The remaining 24 studies included in the analysis were composed of experiments from 1973 to 2014. Out of 24 articles, 4 were written in 2005, 2 in 1982, 2 in 1990, 2 in 1994, 2 in 2003 and 2 in 2014. All articles that were included in this review were published in English in a total of 17 journals. Journal of Comparative Psychology published 4 articles out of 24 and Primates published 3. Analysis of the literature: Studies were coded by the geographical location (country's name), the duration (total lenght of the research measured in months), the type of the experiment performed ( observational, experimental), the common name of the animal observed or used as experimental subject, the activity that was the scope of the tool use behaviour, the kind of tool being used.
DOI: 10.6084/m9.figshare.1259059
title: META-DATA for SYSTEMATIC REVIEW OF THYROID HORMONE

description: META-DATA of systematic review performed on thyroid hormone in humans
DOI: 10.6084/m9.figshare.1259057
title: Zipped FASTA file of Fvb assembly

description: Fvb_genome.fas.gz. Zipped FASTA file of our Fvb assembly.
DOI: 10.6084/m9.figshare.1259058
title: A Systematic Review of Nutrient Fluxes within an Agricultural Watershed

description: A search on the topic of nutrient fluxes in agricultural watersheds was done using Thomson Reuters Web of Science to determine the present primary and peer-reviewed research available. The search was done on November 20, 2014 using Boolean search methods with the terms: “nutrient flux*” (topic), AND “watershed*” (title), AND “agricult*” (topic); which resulted in 60 relevant articles found. The 60 articles found were then further refined in two stages. The first stage is more brief, checking the title and abstract for relevance; articles that are duplicates or not written in the English language was removed as well. Articles not excluded in this initial refinement went through a more detailed examination to test for relevance. Overall, in order to be deemed relevant, articles must be studying some flux of nutrients within an agricultural watershed; if these two requirements were not met, then the article was excluded. Articles excluded within the second refinement stage usually involved studies that focussed on models testing nutrient flux, or the study areas was not focussed on agriculture. A total of 35 articles remained relevant after the two stages of refinement.
DOI: 10.6084/m9.figshare.1259060.v1
title: Excel file - systematic review support

description: Literature search methods: A systematic review was done in November 2014 using the databases Web of Science and Google Scholar to collect and analyse the primary literature to date written about tool use and tool making behaviour in non-human animals. The search for publications on Google Scholar was done using the search terms “tool+using+making+animals”, including only articles, written in a non-limited period of time, sorted by relevance. Since Google Scholar provided a large amount of articles in a descending order from more relevant to less relevant, we detected relevant articles doing a first manual scan looking at the title and at the abstract until relevance was consistent, producing a total of 23 possible publications.The search for literature that was executed using the database Web of Science was done using the search terms “Tool*” (Topic) AND “Use* OR Utilization*” (Topic) AND “Mak*” (Topic) AND “Animal*”(Topic). This produced a result of 316 possible publications. Then we refined the results using the following search categories: “Behavioral Sciences”, “Ecology”, “Zoology”. We also selected only articles. After that, 9 articles were left. Then these underwent a title and abstract scan for relevance to the specific topic. The full text of the remaining articles was processed, and the articles that did not provide specific information about the occurrence of tool use and/or tool behaviour in animals were excluded. We also excluded all the secondary literature as reviewed primary literature without providing its own data. Articles whose content was not focused on the specified topic and articles whose data provided were not enough were also excluded. Of the 339 initial publications, 32 were screened: 2 were removed for not being primary research articles, 24 were directly related to the topic, 6 were excluded with reasons listed above. The remaining 24 studies included in the analysis were composed of experiments from 1973 to 2014. Out of 24 articles, 4 were written in 2005, 2 in 1982, 2 in 1990, 2 in 1994, 2 in 2003 and 2 in 2014. All articles that were included in this review were published in English in a total of 17 journals. Journal of Comparative Psychology published 4 articles out of 24 and Primates published 3. Analysis of the literature: Studies were coded by the geographical location (country's name), the duration (total lenght of the research measured in months), the type of the experiment performed ( observational, experimental), the common name of the animal observed or used as experimental subject, the activity that was the scope of the tool use behaviour, the kind of tool being used.
DOI: 10.6084/m9.figshare.1259058.v1
title: A Systematic Review of Nutrient Fluxes within an Agricultural Watershed

description: A search on the topic of nutrient fluxes in agricultural watersheds was done using Thomson Reuters Web of Science to determine the present primary and peer-reviewed research available. The search was done on November 20, 2014 using Boolean search methods with the terms: “nutrient flux*” (topic), AND “watershed*” (title), AND “agricult*” (topic); which resulted in 60 relevant articles found. The 60 articles found were then further refined in two stages. The first stage is more brief, checking the title and abstract for relevance; articles that are duplicates or not written in the English language was removed as well. Articles not excluded in this initial refinement went through a more detailed examination to test for relevance. Overall, in order to be deemed relevant, articles must be studying some flux of nutrients within an agricultural watershed; if these two requirements were not met, then the article was excluded. Articles excluded within the second refinement stage usually involved studies that focussed on models testing nutrient flux, or the study areas was not focussed on agriculture. A total of 35 articles remained relevant after the two stages of refinement.
DOI: 10.6084/m9.figshare.1259059.v1
title: META-DATA for SYSTEMATIC REVIEW OF THYROID HORMONE

description: META-DATA of systematic review performed on thyroid hormone in humans
DOI: 10.6084/m9.figshare.1259055
title: Table showing how we created the Fvb assembly such that one should be able to recreate it

description: Fvb_Scaffold_Order.txt. Shows how we created the Fvb assembly such that one should be able to recreate it.
DOI: 10.6084/m9.figshare.1259056
title: Annotation file for Fvb giving the gene positions

description: Fvb.gff3. Annotation file for Fvb giving the gene positions
DOI: 10.6084/m9.figshare.1259048
title: Prunus orthologs mapped onto Fragaria assemblies

description: Figure 2. Prunus orthologs mapped onto Fragaria assemblies. Each horizontal line represents an orthologous gene, colored according to its Prunus chromosome, and with a width corresponding to its position on this Prunus chromosome (wider lines are close to the start of their respective Prunus chromosome). Its x-axis position indicates the Fragaria pseudochromosome onto which it is assembled. Its y-axis position indicates its position on this Fragaria pseudochromosome. Thus, regions showing lines of the same color and similar width indicate high synteny between the two genera. Overall, Fvb shows higher synteny than FvH4.
DOI: 10.6084/m9.figshare.1259047
title: Mapping of scaffolds from FvH4 reference genome assembly to Fvb assembly

description: Figure 1. Mapping of scaffolds from FvH4 reference genome assembly to Fvb assembly. The path of every scaffold or scaffold segment is represented by a line (orange = inverted in diploid linkage maps; purple = not inverted in diploid linkage maps; black = no information about scaffold orientation in diploid linkage maps, retained default non-inverted orientation).
DOI: 10.6084/m9.figshare.1259055.v2
title: Table showing how we created the Fvb assembly such that one should be able to recreate it

description: Fvb_Scaffold_Order.txt. Shows how we created the Fvb assembly such that one should be able to recreate it.
DOI: 10.6084/m9.figshare.1259056.v2
title: Annotation file for Fvb giving the gene positions

description: Fvb.gff3. Annotation file for Fvb giving the gene positions
DOI: 10.6084/m9.figshare.1259057.v1
title: Fvb_genome.fas.gz

description: zipped FASTA file of our assembly
DOI: 10.6084/m9.figshare.1259048.v2
title: Prunus orthologs mapped onto Fragaria assemblies

description: Figure 2. Prunus orthologs mapped onto Fragaria assemblies. Each horizontal line represents an orthologous gene, colored according to its Prunus chromosome, and with a width corresponding to its position on this Prunus chromosome (wider lines are close to the start of their respective Prunus chromosome). Its x-axis position indicates the Fragaria pseudochromosome onto which it is assembled. Its y-axis position indicates its position on this Fragaria pseudochromosome. Thus, regions showing lines of the same color and similar width indicate high synteny between the two genera. Overall, Fvb shows higher synteny than FvH4.
DOI: 10.6084/m9.figshare.1259056.v1
title: Fvb.gff3

description: annotation file giving the gene positions
DOI: 10.6084/m9.figshare.1259045
title: A brief description of the methodology for generating this assembly

description: GenerationFvbAssembly.doc. A brief description of the methodology for generating this assembly.
DOI: 10.6084/m9.figshare.1259047.v2
title: Mapping of scaffolds from FvH4 reference genome assembly to Fvb assembly

description: Figure 1. Mapping of scaffolds from FvH4 reference genome assembly to Fvb assembly. The path of every scaffold or scaffold segment is represented by a line (orange = inverted in diploid linkage maps; purple = not inverted in diploid linkage maps; black = no information about scaffold orientation in diploid linkage maps, retained default non-inverted orientation).
DOI: 10.6084/m9.figshare.1259055.v1
title: Fvb_Scaffold_Order.txt

description: Shows how we created the assembly such that one should be able to recreate it.
DOI: 10.6084/m9.figshare.1259047.v1
title: Figure1.pdf

description: Figure 1. Mapping of scaffolds from FvH4 reference genome assembly to Fvb assembly. The path of every scaffold or scaffold segment is represented by a line (orange = inverted in diploid linkage maps; purple = not inverted in diploid linkage maps; black = no information about scaffold orientation in diploid linkage maps, retained default non-inverted orientation).
DOI: 10.6084/m9.figshare.1259048.v1
title: Figure2.pdf

description: Figure 2. Prunus orthologs mapped onto Fragaria assemblies. Each horizontal line represents an orthologous gene, colored according to its Prunus chromosome, and with a width corresponding to its position on this Prunus chromosome (wider lines are close to the start of their respective Prunus chromosome). Its x-axis position indicates the Fragaria pseudochromosome onto which it is assembled. Its y-axis position indicates its position on this Fragaria pseudochromosome. Thus, regions showing lines of the same color and similar width indicate high synteny between the two genera. Overall, Fvb shows higher synteny than FvH4.
DOI: 10.6084/m9.figshare.1259057.v3
title: Zipped FASTA file of Fvb assembly

description: Fvb_genome.fas.gz. Zipped FASTA file of our Fvb assembly.
DOI: 10.6084/m9.figshare.1259043
title: README for Fvb genome assembly of Fragaria vesca (wild strawberry)

description: read me file describing other files
DOI: 10.6084/m9.figshare.1259027
title: GREAT WORKS, BIG IMPACTS AND PROMOTION (SUBSIDIARY AND CONTROLLABLE) OF NATIONAL SUSTAINABLE DEVELOPMENT

description: At present, the "big" cities are almost always marked by great works, therefore,<br>cause major impacts, some positive, others less so. However, when it comes to<br>public works is necessary, first by contrasting the various rights and interests - public<br>and private - for purposes of assessing the feasibility and even the legitimacy to carry<br>out pretense of this order upon consideration of its multidimensional sustainability. In<br>this sense, the conduct of public bidding and even the affirmation of public contracts<br>having as object of major public works, especially in the urban setting from the right<br>to sustainable cities, brings to light the question of judicial review and its limits. It is in<br>this environment that the Government, organized the market and even civil society<br>will seek legal certainty, which claims legal certainty and certainty in the law, equality<br>in its application and further consideration of the foregoing as a benchmark for<br>predictability.
DOI: 10.6084/m9.figshare.1259045.v2
title: A brief description of the methodology for generating this assembly

description: GenerationFvbAssembly.doc. A brief description of the methodology for generating this assembly.
DOI: 10.6084/m9.figshare.1259057.v2
title: Zipped FASTA file of Fvb assembly.

description: Fvb_genome.fas.gz. Zipped FASTA file of our Fvb assembly.
DOI: 10.6084/m9.figshare.1259027.v1
title: GREAT WORKS, BIG IMPACTS AND PROMOTION (SUBSIDIARY AND CONTROLLABLE) OF NATIONAL SUSTAINABLE DEVELOPMENT

description: At present, the "big" cities are almost always marked by great works, therefore,<br>cause major impacts, some positive, others less so. However, when it comes to<br>public works is necessary, first by contrasting the various rights and interests - public<br>and private - for purposes of assessing the feasibility and even the legitimacy to carry<br>out pretense of this order upon consideration of its multidimensional sustainability. In<br>this sense, the conduct of public bidding and even the affirmation of public contracts<br>having as object of major public works, especially in the urban setting from the right<br>to sustainable cities, brings to light the question of judicial review and its limits. It is in<br>this environment that the Government, organized the market and even civil society<br>will seek legal certainty, which claims legal certainty and certainty in the law, equality<br>in its application and further consideration of the foregoing as a benchmark for<br>predictability.
DOI: 10.6084/m9.figshare.1259045.v1
title: GenerationFvbAssembly.doc

description: A brief description of the methodology for generating this assembly.
DOI: 10.6084/m9.figshare.1259023
title: FISHERY INDUCES SPERM DEPLETION AND REDUCTION IN MALE REPRODUCTIVE POTENTIAL FOR CRAB SPECIES UNDER MALE-BIASED HARVEST STRATEGY

description: 10.1371/journal.pone.0115525 Paper data PLOS ONE Pardo et al. FUNDING : FONDECYT 1110445
DOI: 10.6084/m9.figshare.1259043.v2
title: README for Fvb genome assembly of Fragaria vesca (wild strawberry)

description: read me file describing other files
DOI: 10.6084/m9.figshare.1259008
title: Systematic Review: Retinal Degeneration

description: Meta-data on the article
DOI: 10.6084/m9.figshare.1259011
title: The Effects of Acid Deposition on the Invasion of Ecosystems by Non-Native Species: A Systematic Review

description: The effects of acid deposition on invasive species was analyzed using 25 peer-reviewed journal articles.The purpose was to determine whether acid deposition aids in or inhibits the invasion of ecosystems, and to identify gaps in this body of research. Searches were conducted using Web of Science and Google Scholar in November 2014. Results were filtered based of relevance to the topic, and non-relevant articles were excluded from the review.