cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2b6gwx
title: CCDC 2151179: Experimental Crystal Structure Determination

description: Related Article: Tushar S. Basu Baul, Bietlaichhai Hlychho, Maheswara Rao Addepalli, Andrew Duthie, Olivia Sarkar, Arpan Dey Bhowmik, Ansuman Chattopadhyay, María G. Vasquez-Ríos, Herbert Höpfl|2022|J.Mol.Struct.|1277|134827|doi:10.1016/j.molstruc.2022.134827
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b6gxy
title: CCDC 2151180: Experimental Crystal Structure Determination

description: Related Article: Tushar S. Basu Baul, Bietlaichhai Hlychho, Maheswara Rao Addepalli, Andrew Duthie, Olivia Sarkar, Arpan Dey Bhowmik, Ansuman Chattopadhyay, María G. Vasquez-Ríos, Herbert Höpfl|2022|J.Mol.Struct.|1277|134827|doi:10.1016/j.molstruc.2022.134827
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b6gyz
title: CCDC 2151181: Experimental Crystal Structure Determination

description: Related Article: Tushar S. Basu Baul, Bietlaichhai Hlychho, Maheswara Rao Addepalli, Andrew Duthie, Olivia Sarkar, Arpan Dey Bhowmik, Ansuman Chattopadhyay, María G. Vasquez-Ríos, Herbert Höpfl|2022|J.Mol.Struct.|1277|134827|doi:10.1016/j.molstruc.2022.134827
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b6gz0
title: CCDC 2151182: Experimental Crystal Structure Determination

description: Related Article: Tushar S. Basu Baul, Bietlaichhai Hlychho, Maheswara Rao Addepalli, Andrew Duthie, Olivia Sarkar, Arpan Dey Bhowmik, Ansuman Chattopadhyay, María G. Vasquez-Ríos, Herbert Höpfl|2022|J.Mol.Struct.|1277|134827|doi:10.1016/j.molstruc.2022.134827
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b6h02
title: CCDC 2151183: Experimental Crystal Structure Determination

description: Related Article: Tushar S. Basu Baul, Bietlaichhai Hlychho, Maheswara Rao Addepalli, Andrew Duthie, Olivia Sarkar, Arpan Dey Bhowmik, Ansuman Chattopadhyay, María G. Vasquez-Ríos, Herbert Höpfl|2022|J.Mol.Struct.|1277|134827|doi:10.1016/j.molstruc.2022.134827
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15159/phytop.104
title: Small lakes 2011

description: Methods of phytoplankton processing. Samples were preserved with Lugol’s (acidified iodine) solution and processed using the Utermöhl (1958) method. Phytoplankton biomass was calculated from counts of cells or colonies using a Nikon Eclipse Ti-S inverted microscope at x200 and x400 magnification. Preserved sample (3 ml) was settled overnight. Identification and measurements took place in the course of counting. Counting units are independent (single) algal cells, colonies or filaments/trichomes. Biovolumes of algal cells, colonies and/or filaments were calculated using assigned geometric shapes dimensions, and converted to biomass assuming the specific density of 1 g cm-3 in accordance with Edler (1979). References of methods accepted Approved by CEN on 14 July 2006 “Water quality - Guidance standard on the enumeration of phytoplankton using inverted microscopy (Utermöhl technique)” (CEN 15204, 2006) European Standard EN 15204:2006 Edler, L. (ed.) 1979. Recommendations on methods for marine biological studies in the Baltic Sea. Phytoplankton and chlorophyll. – BMB WG 9. Utermöhl, H., (1958). Zur Vervollkommnung der quantitativen Phytoplankton-Methodik. Mitteilungen der Internationale Vereinigung für Theoretische und Angewandte Limnologie 9: 1-38. Biovolume calculation for pelagic and benthic microalgae | Request PDF. Available from: https://www.researchgate.net/publication/220031275_Biovolume_calculation_for_pelagic_and_benthic_microalgae [accessed Oct 29 2018]. The most commonly used traditional biomass estimate for microalgae is cell biovolume, which is calculated from microscopically measured linear dimensions (Steinman et al. 1991, Snoeijs 1994, Sommer 1994, 1995, Hillebrand and Sommer 1997). Huber-Pestalozzi, G., Komarek, J., Fott, B. 1983. Das Phytoplankton des Süsswassers. 7(1). Chlorophyceae. Chlorococcales. Stuttgart. 1044. S. Komarek, J., Anagnostidis, K. 1999. Süsswasserflora von Mitteleuropa. 19/1. Cyanoprocaryota. 1. Chroococcales. Elsevier Spectrum Academischer Verlag. Heidelberg. Berlin. 548 S. Komarek, J., Anagnostidis, K. 2005. Süsswasserflora von Mitteleuropa. 19/2. Cyanoprocaryota. 2. Oscillatoriales. Elsevier Spectrum Academischer Verlag. 759 S. Komárek, J., 2013. Cyanoprokaryota 3. Teil: Heterocystous Genera. Süsswasserflora von Mitteleuropa. B. 19/3. Springer Spektrum. 1130 S. Krammer, K., Lange-Bertalot, H. 1997-1991. Süsswasserflora von Mitteleuropa. Bacillariophyceae. B. 2, 1-4. Spectrum Academischer Verlag.Heidelberg. Berlin. Popovský, J., Pfiester, L.A. 2008. Dinophyceae (Dinoflagellida). Süsswasserflora von Mitteleuropa. B. 6. Springer Spektrum. 272 S. Косинская Е.К. 1960. Флора споровых растений СССР. Том 5. Конъюгаты и Сцеплянки. (2). Изд. АН СССР. Москва-Ленинград. 706 стр. In Russian.
DOI: 10.21227/8mrc-z624
title: diabetes_data_upload

description: "Early Stage Diabetes Risk Prediction Dataset" from the University of California, Irvine (UCI) machine learning Repository. This data was collected from a direct questionnaire of patients from the Diabetes Hospital in Sylhet, Bangladesh. It contains a total of 520 people with diabetes. Related symptoms are in the reference, of which 320 people have diabetes, and 200 do not.
DOI: 10.6084/m9.figshare.21670412
title: Supplement_Material_1 Quality control of Hi-C data

description: Quality control of Hi-C data
DOI: 10.6084/m9.figshare.21670412.v1
title: Supplement_Material_1

description: Quality control of Hi-C data
DOI: 10.17894/ucph.4d0d9a09-b40b-4a3a-93ef-d6c249f49a90
title: PBMetaD simulations of Histatin5 with a99SB-disp at different temperatures

description: Molecular dynamics simulations of the 24 residues peptide Histatin 5. Simulations are performed at 283 K, 293 K, 310 K and 323 K with the a99SB-disp force field and its water. Parallel-bias metadynamics is used to accelerate the sampling of the radius of gyration and of backbone dihedrals.
DOI: 10.34740/kaggle/dsv/4807166
title: 2021 World Population (updated daily)
DOI: 10.15159/phytop.105
title: Small lakes 2012

description: Methods of phytoplankton processing. Samples were preserved with Lugol’s (acidified iodine) solution and processed using the Utermöhl (1958) method. Phytoplankton biomass was calculated from counts of cells or colonies using a Nikon Eclipse Ti-S inverted microscope at x200 and x400 magnification. Preserved sample (3 ml) was settled overnight. Identification and measurements took place in the course of counting. Counting units are independent (single) algal cells, colonies or filaments/trichomes. Biovolumes of algal cells, colonies and/or filaments were calculated using assigned geometric shapes dimensions, and converted to biomass assuming the specific density of 1 g cm-3 in accordance with Edler (1979). References of methods accepted Approved by CEN on 14 July 2006 “Water quality - Guidance standard on the enumeration of phytoplankton using inverted microscopy (Utermöhl technique)” (CEN 15204, 2006) European Standard EN 15204:2006 Edler, L. (ed.) 1979. Recommendations on methods for marine biological studies in the Baltic Sea. Phytoplankton and chlorophyll. – BMB WG 9. Utermöhl, H., (1958). Zur Vervollkommnung der quantitativen Phytoplankton-Methodik. Mitteilungen der Internationale Vereinigung für Theoretische und Angewandte Limnologie 9: 1-38. Biovolume calculation for pelagic and benthic microalgae | Request PDF. Available from: https://www.researchgate.net/publication/220031275_Biovolume_calculation_for_pelagic_and_benthic_microalgae [accessed Oct 29 2018]. The most commonly used traditional biomass estimate for microalgae is cell biovolume, which is calculated from microscopically measured linear dimensions (Steinman et al. 1991, Snoeijs 1994, Sommer 1994, 1995, Hillebrand and Sommer 1997). Huber-Pestalozzi, G., Komarek, J., Fott, B. 1983. Das Phytoplankton des Süsswassers. 7(1). Chlorophyceae. Chlorococcales. Stuttgart. 1044. S. Komarek, J., Anagnostidis, K. 1999. Süsswasserflora von Mitteleuropa. 19/1. Cyanoprocaryota. 1. Chroococcales. Elsevier Spectrum Academischer Verlag. Heidelberg. Berlin. 548 S. Komarek, J., Anagnostidis, K. 2005. Süsswasserflora von Mitteleuropa. 19/2. Cyanoprocaryota. 2. Oscillatoriales. Elsevier Spectrum Academischer Verlag. 759 S. Komárek, J., 2013. Cyanoprokaryota 3. Teil: Heterocystous Genera. Süsswasserflora von Mitteleuropa. B. 19/3. Springer Spektrum. 1130 S. Krammer, K., Lange-Bertalot, H. 1997-1991. Süsswasserflora von Mitteleuropa. Bacillariophyceae. B. 2, 1-4. Spectrum Academischer Verlag.Heidelberg. Berlin. Popovský, J., Pfiester, L.A. 2008. Dinophyceae (Dinoflagellida). Süsswasserflora von Mitteleuropa. B. 6. Springer Spektrum. 272 S. Косинская Е.К. 1960. Флора споровых растений СССР. Том 5. Конъюгаты и Сцеплянки. (2). Изд. АН СССР. Москва-Ленинград. 706 стр. In Russian.
DOI: 10.5281/zenodo.7503225
title: Combined temperature and potential induced defect steering for local doping control in Cu2ZnSnSe4

description: Raw experimental data of publication submitted at Materials Today: Physics ''Combined temperature and potential induced defect steering for local doping control in Cu2ZnSnSe4''
DOI: 10.5281/zenodo.7503224
title: Combined temperature and potential induced defect steering for local doping control in Cu2ZnSnSe4

description: Raw experimental data of publication submitted at Materials Today: Physics ''Combined temperature and potential induced defect steering for local doping control in Cu2ZnSnSe4''
DOI: 10.5281/zenodo.6617710
title: Direct access to millions of mutations by Whole Genome Sequencing of an oilseed rape mutant population

description: Induced mutations are an essential source of genetic variation in plant breeding. EMS mutagenesis has been frequently applied, and mutants have been detected by phenotypic or genotypic screening of large populations. In this study, a rapeseed M<sub>2</sub> population was derived from M<sub>1</sub> parent cultivar “Express” treated with EMS. Whole genomes were sequenced from fourfold (4x) pools of 1,988 M<sub>2</sub> plants representing 497 M<sub>2</sub> families. Detected mutations were not evenly distributed and displayed distinct patterns across the 19 chromosomes with lower mutation rates towards the ends. Mutation frequencies ranged from 32/Mb to 48/Mb. On average, 284,442 single nucleotide polymorphisms per M<sub>2</sub> DNA pool were found resulting from EMS mutagenesis. 55% were C→T and G→A transitions, characteristic for EMS induced (‘canonical’) mutations, whereas the remaining SNPs were ‘non-canonical’ transitions (15%) or transversions (30%). Additionally, we detected 88,725 high confidence insertions and deletions (InDels) per pool. On average, each M<sub>2</sub> plant carried 39,120 canonical mutations, corresponding to a frequency of one mutation per 23.6 kb. Roughly 82% of such mutations were located either 5 kb upstream or downstream (~56%) of gene coding regions or within intergenic regions (26%). The remaining 18% were located within regions coding for genes. All mutations detected by whole-genome sequencing could be verified by comparison with known mutations. Furthermore, all sequences are accessible via the online tool “EMS Brassica” (http://www.emsbrassica.plantbreeding.uni-kiel.de/), which enables direct identification of mutations in any target sequence. The sequence resource described here will further add value for functional gene studies in rapeseed breeding.
description: This work was funded by the Federal Ministry of Education and Research (BMBF) within the framework of the project IRFFA: Improved Rapeseed as Fish Feed in Aquaculture (grant number 031B0357B).
DOI: 10.5281/zenodo.6617711
title: Direct access to millions of mutations by Whole Genome Sequencing of an oilseed rape mutant population

description: Induced mutations are an essential source of genetic variation in plant breeding. EMS mutagenesis has been frequently applied, and mutants have been detected by phenotypic or genotypic screening of large populations. In this study, a rapeseed M<sub>2</sub> population was derived from M<sub>1</sub> parent cultivar “Express” treated with EMS. Whole genomes were sequenced from fourfold (4x) pools of 1,988 M<sub>2</sub> plants representing 497 M<sub>2</sub> families. Detected mutations were not evenly distributed and displayed distinct patterns across the 19 chromosomes with lower mutation rates towards the ends. Mutation frequencies ranged from 32/Mb to 48/Mb. On average, 284,442 single nucleotide polymorphisms per M<sub>2</sub> DNA pool were found resulting from EMS mutagenesis. 55% were C→T and G→A transitions, characteristic for EMS induced (‘canonical’) mutations, whereas the remaining SNPs were ‘non-canonical’ transitions (15%) or transversions (30%). Additionally, we detected 88,725 high confidence insertions and deletions (InDels) per pool. On average, each M<sub>2</sub> plant carried 39,120 canonical mutations, corresponding to a frequency of one mutation per 23.6 kb. Roughly 82% of such mutations were located either 5 kb upstream or downstream (~56%) of gene coding regions or within intergenic regions (26%). The remaining 18% were located within regions coding for genes. All mutations detected by whole-genome sequencing could be verified by comparison with known mutations. Furthermore, all sequences are accessible via the online tool “EMS Brassica” (http://www.emsbrassica.plantbreeding.uni-kiel.de/), which enables direct identification of mutations in any target sequence. The sequence resource described here will further add value for functional gene studies in rapeseed breeding.
description: This work was funded by the Federal Ministry of Education and Research (BMBF) within the framework of the project IRFFA: Improved Rapeseed as Fish Feed in Aquaculture (grant number 031B0357B).
DOI: 10.5281/zenodo.7309423
title: Thermal regimes and hatching success related data for wild king cobra nests from the Western Himalayas, Uttarakhand, India

description: This dataset, collected between 2009-2020, describes the thermal regimes of wild king cobra nests from the foothills of the Western Himalayas of Uttarakhand, northern India. Nest and ambient temperatures at nest sites were recorded every hour via automatic data loggers during, mostly, the latter part of incubation period (post natural nest-abandonment by female king cobras). Nest attributes (e.g. size, weight etc.) and hatching success parameters (i.e. percentage of hatched eggs and offspring size) are also provided per nest. All uploaded data have been analyzed in the paper: "House warming: wild king cobra nests have thermal regimes that positively affect hatching success and hatchling size" by Dolia et al. (currently under review in Journal of Thermal Biology.)
description: This dataset is part of the author's (Jignasu Dolia) ongoing PhD research. Please contact him for permissions to use it or for any clarifications regarding this data-set. Part of this research was supported by grants awarded to the author by the Mohamed Bin Zayed Species Conservation Fund (UAE), Rufford Foundation (UK), Idea Wild (USA) and Wildlife Conservation Trust (INDIA).
DOI: 10.5281/zenodo.7309422
title: Thermal regimes and hatching success related data for wild king cobra nests from the Western Himalayas, Uttarakhand, India

description: This dataset, collected between 2009-2020, describes the thermal regimes of wild king cobra nests from the foothills of the Western Himalayas of Uttarakhand, northern India. Nest and ambient temperatures at nest sites were recorded every hour via automatic data loggers during, mostly, the latter part of incubation period (post natural nest-abandonment by female king cobras). Nest attributes (e.g. size, weight etc.) and hatching success parameters (i.e. percentage of hatched eggs and offspring size) are also provided per nest. All uploaded data have been analyzed in the paper: "House warming: wild king cobra nests have thermal regimes that positively affect hatching success and hatchling size" by Dolia et al. (currently under review in Journal of Thermal Biology.)
description: This dataset is part of the author's (Jignasu Dolia) ongoing PhD research. Please contact him for permissions to use it or for any clarifications regarding this data-set. Part of this research was supported by grants awarded to the author by the Mohamed Bin Zayed Species Conservation Fund (UAE), Rufford Foundation (UK), Idea Wild (USA) and Wildlife Conservation Trust (INDIA).
DOI: 10.6084/m9.figshare.21815019
title: Supplementary Material for: Laparoscopic versus open approach for Siewert-type II/III adenocarcinoma of the esophagogastric junction: A systematic review and meta-analysis

description: Introduction Due to the specific location, the potential advantages of laparoscopic gastrectomy (LG) compared with open gastrectomy (OG) for Siewert II/III adenocarcinoma of the esophagogastric junction (AEG) remain uncertain. The current study aimed to compare the short- and long-term outcomes of LG versus OG in treating Siewert type II/III adenocarcinoma. Methods We searched PubMed, Embase, Web of Science, Medline (hosted by Ovid), and the Cochrane Library for publications, till July 2022 and then used the Revman5.3 software for statistical analysis. Results Ten publications from 10 medical centres were included, with 1516 cases from the LG group and 1219 from the OG group. Meta-analysis results showed that the LG group was superior to the OG group in intraoperative blood loss, hospital stay, lymph nodes retrieved, time to ambulation, time to first flatus, time to diet, 5-year overall survival, and 5-year disease-free survival. There was no significant difference between the two groups in operative time, overall complications, proximal margin, distal margin, pulmonary infection, anastomotic leakage, mortality, ileus, or absolute infection. Conclusions Compared with OG, LG is associated with better surgical and long-term outcomes in Siewert type II/III AEG. LG is a safe and feasible option for treating Siewert type II/III AEG. However, studies with large sample sizes, long follow-up periods, and rigorous designs are needed for verification.
DOI: 10.6084/m9.figshare.21815022
title: Supplementary Material for: Laparoscopic versus open approach for Siewert-type II/III adenocarcinoma of the esophagogastric junction: A systematic review and meta-analysis

description: Introduction Due to the specific location, the potential advantages of laparoscopic gastrectomy (LG) compared with open gastrectomy (OG) for Siewert II/III adenocarcinoma of the esophagogastric junction (AEG) remain uncertain. The current study aimed to compare the short- and long-term outcomes of LG versus OG in treating Siewert type II/III adenocarcinoma. Methods We searched PubMed, Embase, Web of Science, Medline (hosted by Ovid), and the Cochrane Library for publications, till July 2022 and then used the Revman5.3 software for statistical analysis. Results Ten publications from 10 medical centres were included, with 1516 cases from the LG group and 1219 from the OG group. Meta-analysis results showed that the LG group was superior to the OG group in intraoperative blood loss, hospital stay, lymph nodes retrieved, time to ambulation, time to first flatus, time to diet, 5-year overall survival, and 5-year disease-free survival. There was no significant difference between the two groups in operative time, overall complications, proximal margin, distal margin, pulmonary infection, anastomotic leakage, mortality, ileus, or absolute infection. Conclusions Compared with OG, LG is associated with better surgical and long-term outcomes in Siewert type II/III AEG. LG is a safe and feasible option for treating Siewert type II/III AEG. However, studies with large sample sizes, long follow-up periods, and rigorous designs are needed for verification.
DOI: 10.6084/m9.figshare.21815022.v1
title: Supplementary Material for: Laparoscopic versus open approach for Siewert-type II/III adenocarcinoma of the esophagogastric junction: A systematic review and meta-analysis

description: Introduction Due to the specific location, the potential advantages of laparoscopic gastrectomy (LG) compared with open gastrectomy (OG) for Siewert II/III adenocarcinoma of the esophagogastric junction (AEG) remain uncertain. The current study aimed to compare the short- and long-term outcomes of LG versus OG in treating Siewert type II/III adenocarcinoma. Methods We searched PubMed, Embase, Web of Science, Medline (hosted by Ovid), and the Cochrane Library for publications, till July 2022 and then used the Revman5.3 software for statistical analysis. Results Ten publications from 10 medical centres were included, with 1516 cases from the LG group and 1219 from the OG group. Meta-analysis results showed that the LG group was superior to the OG group in intraoperative blood loss, hospital stay, lymph nodes retrieved, time to ambulation, time to first flatus, time to diet, 5-year overall survival, and 5-year disease-free survival. There was no significant difference between the two groups in operative time, overall complications, proximal margin, distal margin, pulmonary infection, anastomotic leakage, mortality, ileus, or absolute infection. Conclusions Compared with OG, LG is associated with better surgical and long-term outcomes in Siewert type II/III AEG. LG is a safe and feasible option for treating Siewert type II/III AEG. However, studies with large sample sizes, long follow-up periods, and rigorous designs are needed for verification.