cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7071311.v1
title: Additional file 9: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

description: Table S6. Detailed information on pathway analysis of DE transcripts. (XLSX 68 kb)
DOI: 10.6084/m9.figshare.7071281
title: Additional file 7: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

description: Table S5. Detailed information on GO term analysis in female upregulated transcripts. (XLSX 94 kb)
DOI: 10.6084/m9.figshare.7071281.v1
title: Additional file 7: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

description: Table S5. Detailed information on GO term analysis in female upregulated transcripts. (XLSX 94 kb)
DOI: 10.6084/m9.figshare.7071260
title: Additional file 5: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

description: Table S4. Detailed information on GO term analysis in male upregulated transcripts. (XLSX 99 kb)
DOI: 10.6084/m9.figshare.7071260.v1
title: Additional file 5: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

description: Table S4. Detailed information on GO term analysis in male upregulated transcripts. (XLSX 99 kb)
DOI: 10.6084/m9.figshare.7071251
title: Additional file 2: of Epidemiology of self-medication in Ethiopia: a systematic review and meta-analysis of observational studies

description: Table S2. Data abstraction format. The table presented the ways of data collection (study characteristics and outcome measures) in Microsoft excel format. It also contained a raw data for primary and secondary outcomes analyses. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.7071251.v1
title: Additional file 2: of Epidemiology of self-medication in Ethiopia: a systematic review and meta-analysis of observational studies

description: Table S2. Data abstraction format. The table presented the ways of data collection (study characteristics and outcome measures) in Microsoft excel format. It also contained a raw data for primary and secondary outcomes analyses. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.7071242
title: Additional file 4: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

description: Table S3. Detailed information on GO term analysis of DE transcripts. (XLSX 78 kb)
DOI: 10.6084/m9.figshare.7071242.v1
title: Additional file 4: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

description: Table S3. Detailed information on GO term analysis of DE transcripts. (XLSX 78 kb)
DOI: 10.6084/m9.figshare.7071224
title: Additional file 3: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

description: Table S2. Detailed information on the top 50 most significantly upregulated DE transcripts. (XLSX 81 kb)
DOI: 10.6084/m9.figshare.7071224.v1
title: Additional file 3: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

description: Table S2. Detailed information on the top 50 most significantly upregulated DE transcripts. (XLSX 81 kb)
DOI: 10.6084/m9.figshare.7071215
title: MOESM3 of Benefits and limitations of three-dimensional printing technology for ecological research

description: Additional file 3. 3D image file (STL format) of Anolis sagrei lizard we made.
DOI: 10.6084/m9.figshare.7071215.v1
title: MOESM3 of Benefits and limitations of three-dimensional printing technology for ecological research

description: Additional file 3. 3D image file (STL format) of Anolis sagrei lizard we made.
DOI: 10.6084/m9.figshare.7071206
title: Additional file 2: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

description: Table S1. Summary of raw sequencing reads, trimmed sequencing reads and sequence read assemblies. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.7071206.v1
title: Additional file 2: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

description: Table S1. Summary of raw sequencing reads, trimmed sequencing reads and sequence read assemblies. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.7071107
title: Additional file 11: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

description: Table S8. Detailed information on pathway analysis in male and female upregulated transcripts. (XLSX 72 kb)
DOI: 10.6084/m9.figshare.7071107.v1
title: Additional file 11: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

description: Table S8. Detailed information on pathway analysis in male and female upregulated transcripts. (XLSX 72 kb)
DOI: 10.6084/m9.figshare.7071095
title: Additional file 10: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

description: Table S7. Detailed information on function of upregulated genes belonging to the phosphatidylinositol signaling pathway. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.7071095.v1
title: Additional file 10: of Transcriptomic analysis of male and female Schistosoma mekongi adult worms

description: Table S7. Detailed information on function of upregulated genes belonging to the phosphatidylinositol signaling pathway. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.7070921
title: Additional file 1: of Heparin-binding protein in ventilator-induced lung injury

description: Datasets. Datasets of ICU patients, pigs and healthy volunteers. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7070921.v1
title: Additional file 1: of Heparin-binding protein in ventilator-induced lung injury

description: Datasets. Datasets of ICU patients, pigs and healthy volunteers. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.12652100.v7
title: Global surface ocean pCO2 from CSIR-ML6 (v2020)

description: An update to the original CSIR-ML6 method. The following changes have been made: SOCATv2020 is used; ERA5 wind data and MSLP are used (instead of ERA interim).<br><b>spco2</b> = surface pCO2 for the ensemble average<b>spco2_ensemble</b> = individual ensemble members of spco2<b>fgco2</b> = air-sea CO2 fluxes <b>area_mask</b> = the area per pixel - doubles as mask for the data<br><b>CSV files </b>- fluxes annually resampled fluxes (PgC yr) for global, &gt;30N, 30N - 30S, &lt;30S- areas (km2) for the regions mentioned above<br>Please cite the dataset as well as the original publication (https://doi.org/10.5194/gmd-12-5113-2019).
DOI: 10.6084/m9.figshare.7070873
title: MOESM2 of IgG subclass responses to excreted-secreted antigens of Plasmodium falciparum in a low-transmission malaria area of the Peruvian Amazon

description: Additional file 2. Raw data of the AU, OD, parasitaemia and characteristics of study participants.
DOI: 10.6084/m9.figshare.7070873.v1
title: MOESM2 of IgG subclass responses to excreted-secreted antigens of Plasmodium falciparum in a low-transmission malaria area of the Peruvian Amazon

description: Additional file 2. Raw data of the AU, OD, parasitaemia and characteristics of study participants.
DOI: 10.6084/m9.figshare.7070837
title: Additional file 2: of Dispersion of Lutzomyia longipalpis and expansion of visceral leishmaniasis in São Paulo State, Brazil: identification of associated factors through survival analysis

description: Table S2. Information about gas pipeline. Municipalities of SP where the northern section of the gas pipeline crosses, the construction starts dates, and the respective classification of the simultaneous or non-simultaneous construction in relation to the vector presence and disease in dogs and humans are presented. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7070837.v1
title: Additional file 2: of Dispersion of Lutzomyia longipalpis and expansion of visceral leishmaniasis in São Paulo State, Brazil: identification of associated factors through survival analysis

description: Table S2. Information about gas pipeline. Municipalities of SP where the northern section of the gas pipeline crosses, the construction starts dates, and the respective classification of the simultaneous or non-simultaneous construction in relation to the vector presence and disease in dogs and humans are presented. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7070822
title: Additional file 1: of Dispersion of Lutzomyia longipalpis and expansion of visceral leishmaniasis in São Paulo State, Brazil: identification of associated factors through survival analysis

description: Table S1. Information about all variables for each municipality used in this study. (XLSX 110 kb)
DOI: 10.6084/m9.figshare.7070822.v1
title: Additional file 1: of Dispersion of Lutzomyia longipalpis and expansion of visceral leishmaniasis in São Paulo State, Brazil: identification of associated factors through survival analysis

description: Table S1. Information about all variables for each municipality used in this study. (XLSX 110 kb)
DOI: 10.6084/m9.figshare.7070807
title: Additional file 6: of Mutational signature distribution varies with DNA replication timing and strand asymmetry

description: Table S5. Values of the strand-specific mutational signatures. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.7070807.v1
title: Additional file 6: of Mutational signature distribution varies with DNA replication timing and strand asymmetry

description: Table S5. Values of the strand-specific mutational signatures. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.7070795
title: Additional file 5: of Mutational signature distribution varies with DNA replication timing and strand asymmetry

description: Table S4. List of all samples. (XLSX 1426 kb)
DOI: 10.6084/m9.figshare.7070795.v1
title: Additional file 5: of Mutational signature distribution varies with DNA replication timing and strand asymmetry

description: Table S4. List of all samples. (XLSX 1426 kb)
DOI: 10.6084/m9.figshare.7070789
title: Additional file 4: of Mutational signature distribution varies with DNA replication timing and strand asymmetry

description: Table S3. Values of data points. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7070789.v1
title: Additional file 4: of Mutational signature distribution varies with DNA replication timing and strand asymmetry

description: Table S3. Values of data points. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7070768
title: Additional file 6: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

description: Table S2. Terpene synthase (TS), non-ribosomal peptide synthetase (NRPS), polyketide synthase (PKS) and hybrid PKS-NRPS genes identified in the genome of T. atrobrunneum ITEM 908, predicted protein sequences, their putative orthologue and % of identity in Trichoderma spp. (XLSX 54Â kb)
DOI: 10.6084/m9.figshare.7070768.v1
title: Additional file 6: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

description: Table S2. Terpene synthase (TS), non-ribosomal peptide synthetase (NRPS), polyketide synthase (PKS) and hybrid PKS-NRPS genes identified in the genome of T. atrobrunneum ITEM 908, predicted protein sequences, their putative orthologue and % of identity in Trichoderma spp. (XLSX 54Â kb)
DOI: 10.6084/m9.figshare.7070753
title: Additional file 5: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

description: Table S1. Comparative analysis of PFAM domains associated to CAZYmes in Trichoderma spp. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.7070753.v1
title: Additional file 5: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

description: Table S1. Comparative analysis of PFAM domains associated to CAZYmes in Trichoderma spp. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.7070735
title: Additional file 4: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

description: The file contains the PFAM functional domains of Trichoderma atrobrunneum ITEM 908 predicted by the PFAM annotator tool implemented in the Galaxy platform (Galaxy tool Version 1.0.0). (TXT 1927Â kb)
DOI: 10.6084/m9.figshare.7070735.v1
title: Additional file 4: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

description: The file contains the PFAM functional domains of Trichoderma atrobrunneum ITEM 908 predicted by the PFAM annotator tool implemented in the Galaxy platform (Galaxy tool Version 1.0.0). (TXT 1927Â kb)
DOI: 10.6084/m9.figshare.7070717
title: Additional file 3: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

description: The file contains gene coordinates of Trichoderma atrobrunneum ITEM 908. (GTF 26492Â kb)
DOI: 10.6084/m9.figshare.7070717.v1
title: Additional file 3: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

description: The file contains gene coordinates of Trichoderma atrobrunneum ITEM 908. (GTF 26492Â kb)
DOI: 10.6084/m9.figshare.7070705
title: Additional file 2: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

description: Trichoderma atrobrunneum ITEM 908 protein sequences: the file contains the multifasta of the proteins predicted by Augustus [100] implemented in the Galaxy platform (Galaxy tool Version 1.0.0) (FASTA 5102Â kb)
DOI: 10.6084/m9.figshare.7070705.v1
title: Additional file 2: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

description: Trichoderma atrobrunneum ITEM 908 protein sequences: the file contains the multifasta of the proteins predicted by Augustus [100] implemented in the Galaxy platform (Galaxy tool Version 1.0.0) (FASTA 5102Â kb)
DOI: 10.6084/m9.figshare.7070690
title: Additional file 1: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

description: The file contains the multi sequence alignment of ITS-TEF1 concatenated datasets used for the phylogenetic analysis of Trichoderma spp. (MAS 69Â kb)
DOI: 10.6084/m9.figshare.7070690.v1
title: Additional file 1: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

description: The file contains the multi sequence alignment of ITS-TEF1 concatenated datasets used for the phylogenetic analysis of Trichoderma spp. (MAS 69Â kb)
DOI: 10.6084/m9.figshare.7070666
title: Additional file 2: of The linear mitochondrial genome of the quarantine chytrid Synchytrium endobioticum; insights into the evolution and recent history of an obligate biotrophic plant pathogen

description: Table S1. mitogenomes and mitochondrial genes included in the Bayesian inference (BI) of phylogeny Table S2. SNP percentages of polymorphic sites relative to the S. endobioticum 1(D1)_MB42 mitogenome Table S3. Mitochondrial haplotype classification of S. endobioticum isolates based on informative sites in coding sequences of seven mitochondrial genes Table S4. Fungal materials and NexGen sequence information. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.7070666.v1
title: Additional file 2: of The linear mitochondrial genome of the quarantine chytrid Synchytrium endobioticum; insights into the evolution and recent history of an obligate biotrophic plant pathogen

description: Table S1. mitogenomes and mitochondrial genes included in the Bayesian inference (BI) of phylogeny Table S2. SNP percentages of polymorphic sites relative to the S. endobioticum 1(D1)_MB42 mitogenome Table S3. Mitochondrial haplotype classification of S. endobioticum isolates based on informative sites in coding sequences of seven mitochondrial genes Table S4. Fungal materials and NexGen sequence information. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.7070183
title: Morning-a-month Website Usability Testing for a Materials Science Gateway

description: Science gateways, offering access to scientific tools and large amounts of data in the form of web portals and other applications, are often run by the research groups who produce these tools and data. As the prevalence of these gateways increases, a key issue that arises is that of usability. The developers of gateways want users to be able to interact with the gateways easily and efficiently. However, design choices are typically made by members of the research groups involved and can be ad-hoc, biased, and generally unpredictable. To ensure users can make full use of a gateway, the need arises for a usability study.<br>The resources needed to do a large-scale usability study are quite significant. Ideal usability testing would involve comparing multiple versions of a user interface to see which version users prefer. In addition to the time and effort needed to produce these versions, many participants need to be found, scripts need to be written, and a large amount of time needs to be dedicated for the testing session itself. <br>While the benefits of large-scale usability testing are obvious, research groups often have neither the user numbers nor the rate of development that would warrant such an effort. Additionally, these groups often do not have the resources needed to fund/staff such an endeavor. <br>When starting a usability testing initiative at the Materials Project, our approach was to make usability testing as easy as possible while still obtaining valuable information. We focused on a ``one morning a month'' model and held 3 testing sessions over the course of 3 months, with 10 participants in total. Each session made use of a script to keep participant experience consistent. Scripts were slightly tweaked between sessions to obtain information on the impact of the script itself on user behavior. Each session was streamed live to observers in another room as well as recorded for later review, and observations were noted immediately after each session was over. With only 10 participants and a minimal budget, we were able to draw conclusions about web design and user behavior specific to our portal. We hope these conclusions, as well as our notes on the testing process itself, prove useful to developers of other science gateways.
DOI: 10.6084/m9.figshare.7070177
title: Groundwater model data and code

description: Model results and code from the manuscript: Zipper et al., "Groundwater controls on post-fire permafrost thaw: Water and energy balance effects"
DOI: 10.6084/m9.figshare.7070177.v1
title: Groundwater model data and code

description: Model results and code from the manuscript: Zipper et al., "Groundwater controls on post-fire permafrost thaw: Water and energy balance effects"
DOI: 10.6084/m9.figshare.7070153
title: Franquias: Empreendedorismo e carreira

description: O material ilustra a palestra apresentada na Semana Acadêmica de Administração da Universidade São Francisco, USF - Bragança Paulista, em 12/09/2018, apresentada pelo Coord. Adm. Sidney L. Vitorino do Grupo de Excelência em Franquias - GEF do Centro de Conhecimento do Conselho Regional de Administração de São Paulo CRA-SP.Como atividade voluntária em parceria do GEF | CRA-SP e a USF- Bragança, apresentada aos cursos de graduação em Economia, Administração de Empresas e Contabilidade.
DOI: 10.6084/m9.figshare.7070153.v1
title: Franquias: Empreendedorismo e carreira

description: O material ilustra a palestra apresentada na Semana Acadêmica de Administração da Universidade São Francisco, USF - Bragança Paulista, em 12/09/2018, apresentada pelo Coord. Adm. Sidney L. Vitorino do Grupo de Excelência em Franquias - GEF do Centro de Conhecimento do Conselho Regional de Administração de São Paulo CRA-SP.Como atividade voluntária em parceria do GEF | CRA-SP e a USF- Bragança, apresentada aos cursos de graduação em Economia, Administração de Empresas e Contabilidade.
DOI: 10.6084/m9.figshare.7070123.v1
title: 1. Brillouin frequency shift.txt

description: Supporting Fig. 4
DOI: 10.6084/m9.figshare.7070084
title: Mitochondrial genome annotation (Mfannot)

description: Mfannot outputs for mitochondrial genomes annotation
DOI: 10.6084/m9.figshare.7070000
title: 2016_Krishnan_VPS_eLife

description: Associated publication: Krishnan, A., Woo, C. W., Chang, L. J., Ruzic, L., Gu, X., Lopez-Sola, M., ... & Wager, T. D. (2016). Somatic and vicarious pain are represented by dissociable multivariate brain patterns. <i>Elife</i>, <i>5</i>, e15166.<br>Abstract: Understanding how humans represent others’ pain is critical for understanding pro-social behavior. ‘Shared experience’ theories propose common brain representations for somatic and vicarious pain, but other evidence suggests that specialized circuits are required to experience others’ suffering. Combining functional neuroimaging with multivariate pattern analyses, we identified dissociable patterns that predicted somatic (high versus low: 100%) and vicarious (high versus low: 100%) pain intensity in out-of-sample individuals. Critically, each pattern was at chance in predicting the other experience, demonstrating separate modifiability of both patterns. Somatotopy (upper versus lower limb: 93% accuracy for both conditions) was also distinct, located in somatosensory versus mentalizing-related circuits for somatic and vicarious pain, respectively. Two additional studies demonstrated the generalizability of the somatic pain pattern (which was originally developed on thermal pain) to mechanical and electrical pain, and also demonstrated the replicability of the somatic/vicarious dissociation. These findings suggest possible mechanisms underlying limitations in feeling others’ pain, and present new, more specific, brain targets for studying pain empathy.
DOI: 10.6084/m9.figshare.7070000.v1
title: 2016_Krishnan_VPS_eLife

description: Associated publication: Krishnan, A., Woo, C. W., Chang, L. J., Ruzic, L., Gu, X., Lopez-Sola, M., ... & Wager, T. D. (2016). Somatic and vicarious pain are represented by dissociable multivariate brain patterns. <i>Elife</i>, <i>5</i>, e15166.<br>Abstract: Understanding how humans represent others’ pain is critical for understanding pro-social behavior. ‘Shared experience’ theories propose common brain representations for somatic and vicarious pain, but other evidence suggests that specialized circuits are required to experience others’ suffering. Combining functional neuroimaging with multivariate pattern analyses, we identified dissociable patterns that predicted somatic (high versus low: 100%) and vicarious (high versus low: 100%) pain intensity in out-of-sample individuals. Critically, each pattern was at chance in predicting the other experience, demonstrating separate modifiability of both patterns. Somatotopy (upper versus lower limb: 93% accuracy for both conditions) was also distinct, located in somatosensory versus mentalizing-related circuits for somatic and vicarious pain, respectively. Two additional studies demonstrated the generalizability of the somatic pain pattern (which was originally developed on thermal pain) to mechanical and electrical pain, and also demonstrated the replicability of the somatic/vicarious dissociation. These findings suggest possible mechanisms underlying limitations in feeling others’ pain, and present new, more specific, brain targets for studying pain empathy.
DOI: 10.6084/m9.figshare.7070084.v2
title: Mitochondrial genome annotation (Mfannot)

description: Mfannot outputs for mitochondrial genomes annotation
DOI: 10.6084/m9.figshare.7070084.v1
title: Mitochondrial genome annotation (Mfannot)

description: Mfannot outputs for mitochondrial genomes annotation