cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j0dv1jrn
title: A Deceitful Handshake. In Art of Science

description: Caption: Ever wondered how SARS-CoV-2 latches onto human cells? Computer simulations capture the atomic-level details of this deadly encounter leading to infection. Participant category: Postdoc Department: Chemistry and Biochemistry The image shows the atom-by-atom reconstruction of the interaction between the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2, spherical particle coming from above) and the angiotensin-converting enzyme 2 (ACE-2, depicted with yellow and red cartoons) exposed on the host cell plasma membrane (flat lipid bilayer on the bottom). The virus utilizes a prominent glycoprotein, called spike (colored in gray), to latch onto ACE-2. This encounter complex allows the virus to gain entry into and infect the host cell, thus appearing like a “deceitful handshake”. At the Amaro lab, in the Chemistry and Biochemistry department at UCSD, we have been using biophysics and high-performance computing to fight COVID-19. As shown in this image, our effort culminated with the building of the all-atom SARS-CoV-2 viral envelope model, a system bearing over 300 million atoms integrating multiple cryoEM, cryoET, glycomic and lipidomic data. Molecular dynamics simulations of this system will usher in new opportunities for drug and vaccine design and enable the investigation of viral infection at subcellular scales. (References: Casalino L, Gaieb Z et al., Beyond Shielding: The Roles of Glycans in the SARS-CoV-2 Spike Protein. ACS Cent. Sci. 2020; Casalino L, Dommer AC, Gaieb Z, et al., AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics. BioRxiv 2020).
DOI: 10.6075/j0hm58b0
title: Bigeye Octopus Suckers. In Art of Science

description: Caption: A sucker for suckers Participant category: Graduate student Department: Marine Biology Research Division (MBRD) at Scripps Institution of Oceanography Closeup shot of the suckers of a North Pacific Bigeye octopus ("Octopus californicus"), collected from a deep-sea trawl on a research vessel and kept in Scripps Institution of Oceanography's Experimental Aquarium.
DOI: 10.6075/j00p0zwk
title: Drifting World through the Scripps Plankton Camera. In Art of Science

description: Caption: The collage of tiny ocean drifters imaged by the Scripps Plankton Camera showing the hidden beauty of the underwater world that is unseen to naked eyes. Participant category: Graduate student Department: Scripps Institution of Oceanography This image is a collage of many representative species of plankton from the Scripps Plankton Camera, showing the hidden beauty of these tiny organisms that cannot be seen by naked eyes. The Scripps Plankton Camera, developed by the Jaffe Lab, is an underwater microscope system that autonomously collects in situ images of plankton at Scripps Pier. The system utilizes darkfield microscopy technique to image these small and mostly transparent marine organisms. The underwater microscope has been running for more than five years and has collected more than millions of images of these plankton. The Jaffe Lab collaborates with many ecologists, both at UCSD and at other institutions around the world, to capitalize on this novel underwater imaging technology and on the large dataset it produces. The system has helped scientists better understand these organisms and can ultimately contribute to new discoveries of the ecology of the ocean.
DOI: 10.6075/j0833rwv
title: Red, White & Blue. In Art of Science

description: Caption: Trichrome staining was performed on a Formalin-Fixed Paraffin-Embedded (FFPE) mouse Pancreatic Cancer Tumor slide. The muscle tissues and collagens differentially stain in Red and Blue color, respectively. Participant category: Faculty/Scientist Affiliation: Division of Surgical Oncology, Department of Surgery, Moores Cancer Center, University of California, San Diego, La Jolla, California. Formalin-Fixed, Paraffin-Embedded (FFPE) tissue slides from a mouse pancreatic cancer tumor were stained with the Trichrome histological staining method. Collagens and muscle tissues are stained differentially in blue and red color, respectively.
DOI: 10.6075/j0930t1n
title: Drosophila melanogaster. In Art of Science

description: Caption: Workhorse of genetics: Drosophila melanogaster Participant category: Faculty/Scientist Affiliation: National Center for Microscopy and Imaging Research at UC San Diego Long considered the linchpin of genomics research since they are easy to manipulate, inexpensive to maintain, have short generation times and share many genes involved in human diseases, these model organisms have led to countless discoveries in biomedicine. This scanning electron micrograph was generated as part of a collaboration between the National Center for Microscopy and Imaging Research at UCSD and the laboratory of renowned UCSD scientist Dr. Michael Karin to better understand genes and aging (see: Lee et al., Science. 2010 Mar 5;327(5970):1223-8). Image by Thomas Deerinck, NCMIR, UCSD.
DOI: 10.6075/j04b316c
title: Whirlwind of neurites extending from fluorescent neurons in cultured explants of embryonic mouse brain tissue. In Art of Science

description: Caption: Molecular programs for neuronal development can unfold semi-autonomously, allowing these neurons from tiny pieces of embryonic brain tissue on a vast, alien culture dish to grow into elaborate forms. Participant category: Graduate student Department: Neurosciences Embryonic mouse neurons labeled with green fluorescent protein, with profusions of neurites extending outwards in swirls. Image captured on a confocal STORM microscope at 10x magnification. The neurons are nascent inhibitory interneurons within tissue explants microdissected from embryonic mouse brains and grown on top of a primary cortical culture for 8 days.
DOI: 10.6075/j0jm29ht
title: Art of Science

description: Data curators at the UC San Diego Library have the privilege of working with researchers from a wide range of scientific disciplines as they prepare data for the Library’s Research Data Collections repository. The visually stunning nature of some of these research data sets has inspired the Library’s Research Data Curation Program (RDCP) to host its inaugural Art of Science contest, which aims to celebrate the beauty that can emerge during scientific exploration and raise awareness of the Library’s data curation services. In February 2021, UC San Diego and affiliate students, postdoctoral and faculty researchers were invited to submit images or graphics related to their research, along with a caption that explains their work in an engaging and accessible way. Images could be obtained by any imaging technique, could be the result of modeling and simulation, or could be obtained by combining multiple images into one artistic image. Photographs could also be of instrumentation, apparatus, devices or other objects used in your scientific investigation. Researcher-artists were allowed to modify images to enhance their aesthetic. The Library Research Data Curation Program acknowledges the generous support of Wendy Ibsen and Arica Lubin for sharing their insights about producing the UC Santa Barbara “Art of Science” contest; Brian Wolf for demonstrating UC Santa Barbara “Art of Science” website development tools; and Erinna Lin, our awesome graphic designer, for creating the gorgeous “Art of Science” logo. -- About Submissions and Winner Selection -- Contest Submission Guidelines • Submissions should be original research outputs based on original research conducted in residence at or in affiliation with UC San Diego. • Include a title and a caption (referred to as “subtitle” on the submission website) that communicates the science behind the image in a clear and engaging way, and a detailed description. • Images may be obtained by any imaging technique, or may be the result of modeling and simulation, or can be obtained by combining multiple images into one artistic image. Photographs may also be of instrumentation, apparatus, devices or other objects used in your scientific investigation. • Images may be modified to enhance their aesthetic. Winner Selection Judge Nominations: A panel of judges composed of faculty members, senior academic staff, and campus administrators reviews all eligible entries based on the following evaluation criteria: • Image: aesthetic excellence (captivating, stunning, and/or otherwise visually interesting) as well as scientific or technical interest. • Caption: communicates the science behind the image in a clear and engaging way. Open voting: Anyone with a PollUnit “Art of Science” contest link can vote for a single favorite image. The image with the most number of “Likes” is designated as the “open voting favorite.”
DOI: 10.7298/6g8h-da29
title: Data from: A private channel of nitrogen alleviates interspecific competition for an annual legume
DOI: 10.15468/qvwmsb
title: Redescription of the goby genus Gobiosoma (Teleostei: Gobiidae: Gobiosomatini), with the synonymy of the genus Enypnias

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tornabene, Luke, Van Tassell, James L. (2014): Redescription of the goby genus Gobiosoma (Teleostei: Gobiidae: Gobiosomatini), with the synonymy of the genus Enypnias. Journal of Natural History 48 (23 - 24): 1413-1437, DOI: 10.1080/00222933.2013.840938, URL: http://dx.doi.org/10.1080/00222933.2013.840938
DOI: 10.6084/m9.figshare.13138331.v13
title: Geospatial analysis of soil erosion including precipitation scenarios in a conservation area of the Amazon Region in Peru

description: The Tilacancha Private Conservation Area provides fresh water to the City of Chachapoyas, Amazonas. Therefore, the amount of soil lost in the year and under precipitation scenarios was determined. Individually, the values ​​of the factors were obtained: Rain erosivity (R) in 2019 and simulating increase and decrease of 15% of rainfall, soil erodibility (K), length and degree of slope (LS), land cover (C) and conservation practices (P); and they were integrated into USLE, obtaining A = R*K*LS*PC, (t/ha.yr). Six ranges of erosion were found, the ACP had areas where from 0.4 to 665.20 t/ha.yr of soil was lost. A 15% reduction in rainfall would represent a loss of soil from 0.20 to 301.56 t/ha.yr and an increase in rainfall by 15%, the erosion ranges would vary from 0.5 to 1028.84 t/ha.yr.
DOI: 10.6084/m9.figshare.12018069
title: <i>Discostella lacuskarluki</i> (Manguin ex Kociolek & Reviers) comb. nov.: a common nanoplanktonic diatom of Arctic and boreal lakes

description: <i>Cyclotella lacuskarluki</i> Manguin ex Kociolek & Reviers is a small diatom known only from the original drawing that provides little information on the morphology of this taxon. As Manguin’s original materials are lost, recently collected samples from Lake Karluk, Alaska, the type locality of the species, were studied with light and scanning electron microscopy to determine its identity. As a result of this investigation, <i>C. lacuskarluki</i> is transferred here to the genus <i>Discostella</i>. <i>Discostella lacuskarluki</i> is 2.5–7 µm in diameter, has a shallow mantle, a stellar pattern of alveoli in the valve centre that may be reduced or completely absent, bifurcating costae and 4–5 marginal fultoportulae opening externally by short thickened tubes with round openings. We observed this species in numerous lakes across Alaska, in Lake Tahoe, Nevada, in several lakes across Canada, and in tundra and tree-line lakes of Northeastern Siberia. Although direct comparison with other <i>Discostella</i> species is difficult because the small size of these diatoms requires high-resolution imagery to reveal ultrastructural details, it appears that <i>D. lacuskarluki</i> is conspecific with <i>D. tatrica</i> Procházková et al. recently described from lakes of Central Europe and also reported from the European part of Russia. It is also conspecific with <i>D. nipponica</i> (Skvotzov) Tuji & D. M. Williams known from Japan. The apparent wide distributional range of this species indicates that it has been overlooked and commonly reported as <i>D. pseudostelligera</i> or <i>D. stelligera</i> in arctic, boreal and alpine lakes.
DOI: 10.6084/m9.figshare.12018069.v1
title: <i>Discostella lacuskarluki</i> (Manguin ex Kociolek & Reviers) comb. nov.: a common nanoplanktonic diatom of Arctic and boreal lakes

description: <i>Cyclotella lacuskarluki</i> Manguin ex Kociolek & Reviers is a small diatom known only from the original drawing that provides little information on the morphology of this taxon. As Manguin’s original materials are lost, recently collected samples from Lake Karluk, Alaska, the type locality of the species, were studied with light and scanning electron microscopy to determine its identity. As a result of this investigation, <i>C. lacuskarluki</i> is transferred here to the genus <i>Discostella</i>. <i>Discostella lacuskarluki</i> is 2.5–7 µm in diameter, has a shallow mantle, a stellar pattern of alveoli in the valve centre that may be reduced or completely absent, bifurcating costae and 4–5 marginal fultoportulae opening externally by short thickened tubes with round openings. We observed this species in numerous lakes across Alaska, in Lake Tahoe, Nevada, in several lakes across Canada, and in tundra and tree-line lakes of Northeastern Siberia. Although direct comparison with other <i>Discostella</i> species is difficult because the small size of these diatoms requires high-resolution imagery to reveal ultrastructural details, it appears that <i>D. lacuskarluki</i> is conspecific with <i>D. tatrica</i> Procházková et al. recently described from lakes of Central Europe and also reported from the European part of Russia. It is also conspecific with <i>D. nipponica</i> (Skvotzov) Tuji & D. M. Williams known from Japan. The apparent wide distributional range of this species indicates that it has been overlooked and commonly reported as <i>D. pseudostelligera</i> or <i>D. stelligera</i> in arctic, boreal and alpine lakes.
DOI: 10.5519/0047020
title: Deepak_Blythia_Herpetoreas

description: DNA sequence alignments
DOI: 10.5519/0038230
title: Deepak_Xylophis

description: Alignments of DNA sequence data used in phylogenetic analysis
DOI: 10.5519/0075623
title: Deepak_Xylophis_mosaicus

description: DNA sequence alignment
DOI: 10.5519/0053882
title: Das_Hebius_pealii

description: DNA sequence alignments
DOI: 10.5519/0077337
title: Giri_Smithophis

description: Phylogenetic datasets
DOI: 10.15142/t3zk5s
title: Sweeping Langmuir Probe (SLP) of the STORMs Sounding Rocket Mission

description: On October 30, 2007 NASA launched rocket 36.218 carrying the mission: “Investigation of Mid Latitude Ionospheric Irregularities Associated with Terrestrial Weather Systems” also known as the STORMS Mission. The rocket was launched from Wallops Island, Virginia (37.95◦ N, 284.53◦ E, 67.5◦ dip angle) at twelve minutes past local midnight. It flew along an azimuth of 114◦ and reached apogee near 394 km. The rocket payload had a suite of instruments from Utah State University/Space Dynamic Lab (USU/SDL) and University of Texas, Dallas (UTD), for making in-situ electron density, wind and electric field measurements.

The Sweeping Langmuir Probe or SLP was one of the instruments of the rocket payload and built by Utah State University. It operated in 2 modes: (1) Fixed mode, during which the bias voltage to the instrument was fixed at 3V , (2) Sweeping mode, during which the bias voltage applied to the probe was swept through a voltage range periodically. There was 19 such sweeps made by the instrument through the entire trajectory of the rocket and during each of these 19 sweeps the bias voltage was swept from -1V to 3 V in 1024 steps.

In this workbook, we present the current collected by the SLP during each of the 19 sweeps. The voltage measured by one of the four floating potential probes (FPP) is also included along with bias voltage and SLP current to aid in data analysis of the SLP current.

Each sheet of the workbook contains data from one of 19 sweeps of SLP.
DOI: 10.6084/m9.figshare.13138331.v14
title: Geospatial analysis of soil erosion including precipitation scenarios in a conservation area of the Amazon Region in Peru

description: The Tilacancha Private Conservation Area provides fresh water to the City of Chachapoyas, Amazonas. Therefore, the amount of soil lost in the year and under precipitation scenarios was determined. Individually, the values ​​of the factors were obtained: Rain erosivity (R) in 2019 and simulating increase and decrease of 15% of rainfall, soil erodibility (K), length and degree of slope (LS), land cover (C) and conservation practices (P); and they were integrated into USLE, obtaining A = R*K*LS*PC, (t/ha.yr). Six ranges of erosion were found, the ACP had areas where from 0.4 to 665.20 t/ha.yr of soil was lost. A 15% reduction in rainfall would represent a loss of soil from 0.20 to 301.56 t/ha.yr and an increase in rainfall by 15%, the erosion ranges would vary from 0.5 to 1028.84 t/ha.yr.
DOI: 10.5519/0072507
title: ALICE test images

description: Images used to test different software pipelines for label extraction.
DOI: 10.35090/8hqw-c147
title: Meridional Heat and Salinity Transports and the Surface Freshwater Exchange Derived from the OSNAP (Overturning in the Subpolar North Atlantic Program) Array between August 2014 and May 2018
DOI: 10.15142/t3ts3v
title: Refined climate downscaling for the Intermountain West

description: Large biases associated with climate projections are problematic when it comes to their regional application in the assessment of water resources and ecosystems. We produced a set of regional climate projections that have the systematic biases reduced. The dataset first utilized a statistical regression technique and a global reanalysis dataset to correct biases in the globally-simulated variables that are subsequently used to drive the regional model. The bias-corrected global simulation data led to a more realistic regional climate simulation of precipitation and associated atmospheric dynamics, as well as snow water equivalent (SWE) in comparison to the original globally-driven simulation. This effective and economical method provides a useful tool to reduce biases in regional climate downscaling simulations of water resource variables.
DOI: 10.15142/t3np4n
title: DNA methylation in lung tissues of mouse offspring exposed in utero to polycyclic aromatic hydrocarbons: Appendix F. Gene ontology maps

description: This archive includes 10 individual image files, each of which depicts a Gene Ontolgoy map for GO terms representing hypermethylated gene promoters unique for the indicated tissue(s) (listed first in file name) compared to other tissues (listed in parentheses in file name).
DOI: 10.15468/xzxfpc
title: A checklist of Scoliidae (Insecta: Hymenoptera) from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Liu, Zhen, Achterberg, Cornelis Van, He, Jun-Hua, Chen, Xue-Xin (2021): A checklist of Scoliidae (Insecta: Hymenoptera) from China. Zootaxa 4966 (2): 101-126, DOI: https://doi.org/10.11646/zootaxa.4966.2.1
DOI: 10.15468/2vhj36
title: A new species-group of Clubiona Latreille, 1804 and descriptions of four new species from Borneo (Araneae, Clubionidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dankittipakul, Pakawin, Singtripop, Tippawan (2014): A new species-group of Clubiona Latreille, 1804 and descriptions of four new species from Borneo (Araneae, Clubionidae). Journal of Natural History (J. Nat. Hist.) 48 (31 - 32): 1923-1936, DOI: 10.1080/00222933.2014.902140, URL: http://dx.doi.org/10.1080/00222933.2014.902140
DOI: 10.15468/w5huxz
title: Revision of Palaearctic Idiotypa (Hymenoptera, Diapriidae, Diapriinae, Spilomicrini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Chemyreva, Vasilisa G., Notton, David G., Zaldívar-Riverón, Alejandro (2021): Revision of Palaearctic Idiotypa (Hymenoptera, Diapriidae, Diapriinae, Spilomicrini). Zootaxa 4966 (2): 127-144, DOI: https://doi.org/10.11646/zootaxa.4966.2.2
DOI: 10.5281/zenodo.4783634
title: DISTRIBUTION OF THE CHLAMYDIA TRACHOMATIS F GENOTYPE IN THE GENITAL INFECTIONS OF WOMEN FROM OF THE CITY OF BELÉM, IN THE AMAZON REGION OF BRAZIL

description: Data of study
DOI: 10.15468/8jbsbj
title: First record of the genus Arphthicarus Niedbała (Acari: Oribatida: Phthiracaridae) from China, with descriptions of two new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Liu, Dong, Wu, Donghui, Chen, Jun (2014): First record of the genus Arphthicarus Niedbała (Acari: Oribatida: Phthiracaridae) from China, with descriptions of two new species. Journal of Natural History (J. Nat. Hist.) 48 (35 - 36): 2199-2206, DOI: 10.1080/00222933.2014.909064, URL: http://dx.doi.org/10.1080/00222933.2014.909064
DOI: 10.5281/zenodo.4783633
title: DISTRIBUTION OF THE CHLAMYDIA TRACHOMATIS F GENOTYPE IN THE GENITAL INFECTIONS OF WOMEN FROM OF THE CITY OF BELÉM, IN THE AMAZON REGION OF BRAZIL

description: Data of study
DOI: 10.15468/s98az9
title: Description of two new genera and two new species of antipatharian corals in the family Aphanipathidae (Cnidaria: Anthozoa: Antipatharia)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Opresko, Dennis M., Bo, Marzia, Stein, David P., Evankow, Ann, Distel, Daniel L., Brugler, Mercer R. (2021): Description of two new genera and two new species of antipatharian corals in the family Aphanipathidae (Cnidaria: Anthozoa: Antipatharia). Zootaxa 4966 (2): 161-174, DOI: https://doi.org/10.11646/zootaxa.4966.2.4
DOI: 10.15468/sguq6x
title: Gekko phuyenensis sp. nov. (Squamata: Gekkonidae), a new species from southern Vietnam

description: This dataset contains the digitized treatments in Plazi based on the original journal article Nguyen, Vu Dang Hoang, Nguyen, Luan Thanh, Orlov, Nikolai L., Murphy, Robert W., Nguyen, Sang Ngoc (2021): Gekko phuyenensis sp. nov. (Squamata: Gekkonidae), a new species from southern Vietnam. Zootaxa 4966 (2): 175-186, DOI: https://doi.org/10.11646/zootaxa.4966.2.5
DOI: 10.15468/ef98x4
title: A new species of Bolitoglossa (Caudata: Plethodontidae) of the Bolitoglossa franklini group from an isolated cloud forest in northern Guatemala

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dahinten-Bailey, Hellen, Serrano, Marcelo J., Alonso-Ascencio, Margarita, Cruz-Font, Jose J., Rosito-Prado, Isabella, Ruiz-Villanueva, Kennedy J. A., Vásquez-Almazan, Carlos, Ariano-Sánchez, Daniel (2021): A new species of Bolitoglossa (Caudata: Plethodontidae) of the Bolitoglossa franklini group from an isolated cloud forest in northern Guatemala. Zootaxa 4966 (2): 202-214, DOI: https://doi.org/10.11646/zootaxa.4966.2.7
DOI: 10.15468/y5uakw
title: New species of the cicada genus Semia Matsumura (Hemiptera: Cicadidae) from China and a phylogeny of Semia spp. and their relatives based on molecular data

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yang, Mingsheng, Wei, Cong (2014): New species of the cicada genus Semia Matsumura (Hemiptera: Cicadidae) from China and a phylogeny of Semia spp. and their relatives based on molecular data. Journal of Natural History (J. Nat. Hist.) 48 (37 - 38): 2307-2323, DOI: 10.1080/00222933.2014.908975, URL: http://dx.doi.org/10.1080/00222933.2014.908975
DOI: 10.15468/m97mem
title: Apertochrysa Tjeder, 1966, a new senior synonym of Pseudomallada Tsukaguchi 1995 (Neuroptera: Chrysopidae: Chrysopinae: Chrysopini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Breitkreuz, Laura, Duelli, Peter, Oswald, John (2021): Apertochrysa Tjeder, 1966, a new senior synonym of Pseudomallada Tsukaguchi 1995 (Neuroptera: Chrysopidae: Chrysopinae: Chrysopini). Zootaxa 4966 (2): 215-225, DOI: https://doi.org/10.11646/zootaxa.4966.2.8