cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23904797
title: A new sturgeon from the Upper Cretaceous Horseshoe Canyon Formation in central Alberta, Canada

description: The posterior portion of a sturgeon skull preserved in a nodule was recovered from the latest Campanian sediments of the Horseshoe Canyon Formation in the city of Edmonton, Alberta, Canada. It is described here as a new genus and species of Acipenseriformes. The skull represents an individual of at least 2 meters in total length. This species is of particular interest because different bones of the skull show a surface ornamentation with different patterns; the clavicle has large pits, the dermal skull bones have smaller pits and radiating ridges, and the subopercle shows fine radiating ridges. The new taxon, here named †<i>Boreiosturion labyrinthicus</i>, can be confidently included in the extant family Acipenseridae but a phylogenetic analysis does not further resolve relationships. This fossil is the first documentation of sturgeon in the latest Campanian of North America, and bridges the gap between the mid-Campanian assemblage of Dinosaur Park and the late Maastrichtian material from the Hell Creek Formation.
DOI: 10.6084/m9.figshare.23904797.v1
title: A new sturgeon from the Upper Cretaceous Horseshoe Canyon Formation in central Alberta, Canada

description: The posterior portion of a sturgeon skull preserved in a nodule was recovered from the latest Campanian sediments of the Horseshoe Canyon Formation in the city of Edmonton, Alberta, Canada. It is described here as a new genus and species of Acipenseriformes. The skull represents an individual of at least 2 meters in total length. This species is of particular interest because different bones of the skull show a surface ornamentation with different patterns; the clavicle has large pits, the dermal skull bones have smaller pits and radiating ridges, and the subopercle shows fine radiating ridges. The new taxon, here named †<i>Boreiosturion labyrinthicus</i>, can be confidently included in the extant family Acipenseridae but a phylogenetic analysis does not further resolve relationships. This fossil is the first documentation of sturgeon in the latest Campanian of North America, and bridges the gap between the mid-Campanian assemblage of Dinosaur Park and the late Maastrichtian material from the Hell Creek Formation.
DOI: 10.6084/m9.figshare.24015105
title: Anatomy and phylogenetic affinities of a new silesaurid assemblage from the Carnian beds of south Brazil

description: New specimens and the reassessment of many silesaurids have recently shed light on the origin and early evolution of dinosaurs and their close relatives. Yet, the group is relatively poorly represented in South America, an area that likely played an important role in dinosaurian origins. Since the discovery of <i>Sacisaurus agudoensis</i> from the Norian Caturrita Formation, only the fragmentary <i>Gamatavus antiquus</i> and <i>Amanasaurus nesbitti</i> have been reported from the Triassic of south Brazil. Here we describe disarticulated silesaurid remains from Waldsanga, one of the most important tetrapod-bearing localities of the Santa Maria Formation, which represent the second Carnian occurrence of the group in Brazil. The postcranial elements exhibit a combination of dinosauromorph symplesiomorphies and silesaurid diagnostic traits, showing that a conservative anatomy is pervasive among early dinosauromorphs. We also conducted a set of exploratory analyses to infer the phylogenetic relations of the new occurrence and the robustness of some of the most recent phylogenetic hypotheses in face of the increasing diversity of Silesauridae. This revealed a rather uncertain evolutionary scenario not only for Silesauridae, but for early dinosauromorphs in general.
DOI: 10.6084/m9.figshare.23828164
title: A new clevosaurid (Lepidosauria: Rhynchocephalia) from the Upper Triassic of India

description: A new clevosaurid rhynchocephalian is described from the Upper Triassic Tiki Formation of the Rewa Gondwana Basin of India. The material is based on several partial craniomandibular elements containing acrodont and fully ankylosed tooth implantations and on the basis of multiple diagnostic features is assigned to a new taxon, <i>Clevosaurus nicholasi</i>. Phylogenetic analysis nests the Tiki rhynchocephalian within the clade Clevosauridae, where it is recovered as an early-diverging taxon basal to the other clevosaurs except for a clade comprising <i>C. convallis</i> + <i>Sigmala sigmala</i>. The autapomorphic characters of <i>Clevosaurus nicholasi</i> include a very robust dentary with an obliquely angled narrow lip of the secondary bone at the symphysis, anteriorly bifurcated Meckelian canal, a sub-dental shelf on the dentary, acrodont marginal anterior teeth, and absence of or smooth lateral and medial wear facets on the marginal dentary and maxillary teeth, respectively. The Late Triassic rhynchocephalian record of the Gondwana is relatively sparse in comparison with that of the Laurasian regions, and the new clevosaur represents the first Late Triassic record from India. Based on the paleobiogeographic distribution, a possible Gondwanan origin for Clevosauridae is hypothesized.
DOI: 10.6084/m9.figshare.23828164.v1
title: A new clevosaurid (Lepidosauria: Rhynchocephalia) from the Upper Triassic of India

description: A new clevosaurid rhynchocephalian is described from the Upper Triassic Tiki Formation of the Rewa Gondwana Basin of India. The material is based on several partial craniomandibular elements containing acrodont and fully ankylosed tooth implantations and on the basis of multiple diagnostic features is assigned to a new taxon, <i>Clevosaurus nicholasi</i>. Phylogenetic analysis nests the Tiki rhynchocephalian within the clade Clevosauridae, where it is recovered as an early-diverging taxon basal to the other clevosaurs except for a clade comprising <i>C. convallis</i> + <i>Sigmala sigmala</i>. The autapomorphic characters of <i>Clevosaurus nicholasi</i> include a very robust dentary with an obliquely angled narrow lip of the secondary bone at the symphysis, anteriorly bifurcated Meckelian canal, a sub-dental shelf on the dentary, acrodont marginal anterior teeth, and absence of or smooth lateral and medial wear facets on the marginal dentary and maxillary teeth, respectively. The Late Triassic rhynchocephalian record of the Gondwana is relatively sparse in comparison with that of the Laurasian regions, and the new clevosaur represents the first Late Triassic record from India. Based on the paleobiogeographic distribution, a possible Gondwanan origin for Clevosauridae is hypothesized.
DOI: 10.6084/m9.figshare.23931635
title: Late Miocene ‘οvibovin’ bovids (Mammalia, Bovidae) from Çorakyerler, Turkey

description: Fossil ‘ovibovin’ bovids are described from the Upper Miocene of Çorakyerler (north-central Anatolia). Two taxa have been recognized: the predominant <i>Criotherium argalioides</i>, known by several craniodental remains, and the less common <i>Hezhengia</i>? cf. <i>inundata</i>, documented by a few dentitions. A review of <i>C. argalioides</i> records from Samos and Kemiklitepe D and a thorough comparison with the Çorakyerler sample provides new data on the morphological and metric variability of this taxon, as well as its chronological and geographic range. <i>Hezhengia</i>? cf. <i>inundata</i> from Çorakyerler reveals important similarities with the Garkin (Turkey) taxon, which, in contrast to previous studies, we find more similar to the Chinese <i>Hezhengia</i> than to the Chinese <i>Plesiaddax</i> as originally suggested. The same is true for “<i>Plesiaddax</i>” <i>simplex</i> from Kayadibi (Turkey), which is referred to as <i>Hezhengia</i>? <i>simplex</i>. The co-occurrence of two ‘ovibovin’ bovids of similar size in the same assemblage was previously suspected but never before documented.
DOI: 10.6084/m9.figshare.23931635.v2
title: Late Miocene ‘οvibovin’ bovids (Mammalia, Bovidae) from Çorakyerler, Turkey

description: Fossil ‘ovibovin’ bovids are described from the Upper Miocene of Çorakyerler (north-central Anatolia). Two taxa have been recognized: the predominant <i>Criotherium argalioides</i>, known by several craniodental remains, and the less common <i>Hezhengia</i>? cf. <i>inundata</i>, documented by a few dentitions. A review of <i>C. argalioides</i> records from Samos and Kemiklitepe D and a thorough comparison with the Çorakyerler sample provides new data on the morphological and metric variability of this taxon, as well as its chronological and geographic range. <i>Hezhengia</i>? cf. <i>inundata</i> from Çorakyerler reveals important similarities with the Garkin (Turkey) taxon, which, in contrast to previous studies, we find more similar to the Chinese <i>Hezhengia</i> than to the Chinese <i>Plesiaddax</i> as originally suggested. The same is true for “<i>Plesiaddax</i>” <i>simplex</i> from Kayadibi (Turkey), which is referred to as <i>Hezhengia</i>? <i>simplex</i>. The co-occurrence of two ‘ovibovin’ bovids of similar size in the same assemblage was previously suspected but never before documented.
DOI: 10.6084/m9.figshare.23931635.v1
title: Late Miocene ‘ovibovin’ bovids (Mammalia, Bovidae) from Çorakyerler, Turkey

description: Fossil ‘ovibovin’ bovids are described from the Upper Miocene of Çorakyerler (north-central Anatolia). Two taxa have been recognized: the predominant <i>Criotherium argalioides</i>, known by several craniodental remains, and the less common <i>Hezhengia</i>? cf. <i>inundata</i>, documented by a few dentitions. A review of <i>C. argalioides</i> records from Samos and Kemiklitepe D and a thorough comparison with the Çorakyerler sample provides new data on the morphological and metric variability of this taxon, as well as its chronological and geographic range. <i>Hezhengia</i>? cf. <i>inundata</i> from Çorakyerler reveals important similarities with the Garkin (Turkey) taxon, which, in contrast to previous studies, we find more similar to the Chinese <i>Hezhengia</i> than to the Chinese <i>Plesiaddax</i> as originally suggested. The same is true for “<i>Plesiaddax</i>” <i>simplex</i> from Kayadibi (Turkey), which is referred to as <i>Hezhengia</i>? <i>simplex</i>. The co-occurrence of two ‘ovibovin’ bovids of similar size in the same assemblage was previously suspected but never before documented.
DOI: 10.5281/zenodo.10517991
title: Ulm Experiments UC5
DOI: 10.5281/zenodo.10517992
title: Ulm Experiments UC5
DOI: 10.5281/zenodo.10526890
title: Identification of clinical disease trajectories in neurodegenerative disorders with natural language processing

description: This repository is linked to the study Identification of clinical disease trajectories in neurodegenerative disorders with natural language processing of which a preprint version can be found on this link. 

 

This study aids cross-disorder brain research by converting medical record summaries into clinical disease trajectories.
















 

Data reposited here describes the following data types: Donor general information, labelled sentences (training data), clinical disease trajectories, and neuropathological diagnosis metadata.
DOI: 10.5281/zenodo.10526891
title: Identification of clinical disease trajectories in neurodegenerative disorders with natural language processing

description: This repository is linked to the study Identification of clinical disease trajectories in neurodegenerative disorders with natural language processing of which a preprint version can be found on this link. 

 

This study aids cross-disorder brain research by converting medical record summaries into clinical disease trajectories.
















 

Data reposited here describes the following data types: Donor general information, labelled sentences (training data), clinical disease trajectories, and neuropathological diagnosis metadata.
DOI: 10.17031/6596dc53ef484
title: 1975 Marine Biological Association of the UK (MBA) Bay of Biscay RV Sarsia Cruise June-July
title: 1975 MBA Bay of Biscay RV Sarsia Cruise June-July

description: Records from the RV Sarsia Cruise in June-July of 1975 along the European continental slope in the Bay of Biscay. Samples collected using 4ft rectangular dredge, anchor dredge and Norway Agassiz trawls. Records supplied by Dr. Eve Southward and collated by DASSH as part of the 'Dredging the Depths' project.
DOI: 10.5281/zenodo.7858115
title: PretoxTM Corpus: a gold standard corpus of preclinical treatment-related findings annotated from toxicology reports

description: The PretoxTM Corpus is a gold standard corpus of preclinical treatment-related findings annotated from toxicology reports.


Example documents annotated by domain experts, also known as a gold standard corpus, are needed in order to develop, train, and validate text mining tools. To this aim we designed and performed an annotation activity for the development of the corpus of treatment-related findings: the PretoxTM corpus.


A treatment-related finding expression enclose several named entities; the most relevant one is the abnormal effect detected; which depending on the study domain of the finding, can be given by a measurement, test, or examination named Study Test and an abnormal Manifestation result obtained for that study test; or by an abnormal Finding in study domains where there is no associated test or measurement (e.g., clinical, macroscopic and microscopic). Other related named entities that could be present to complete the treatment-related finding are; the Specimen of the abnormal observation, the Sex of the subject, the Group of subjects in which the observation was detected and the Dose level administration of the compound. Examples of sentences with treatment-related findings are: “The decrease in food consumption and body weight of the animals from the mid dose onwards is regarded as evidence of general toxicity.” and "At dose level 3, absolute and relative liver weights were increased in male rats.”.


Contributions: The PretoxTM corpus was developed by BSC, with the contribution of IMIM and a team of experts from the eTRANSAFE EFPIA partners.


License: Creative Commons Attribution-ShareAlike 4.0 International (cc by sa 4.0).


The PretoxTM resources have been developed as part of the eTRANSAFE project.


For more information about PretoxTM please visit:


PretoxTM Corpus Gitlab: https://gitlab.bsc.es/inb/etransafe/preclinical-toxicological-corpus/


PretoxTM central documentation: https://pretoxtm.gitlab.io/documentation/
DOI: 10.5281/zenodo.7858116
title: PretoxTM Corpus: a gold standard corpus of preclinical treatment-related findings annotated from toxicology reports

description: The PretoxTM Corpus is a gold standard corpus of preclinical treatment-related findings annotated from toxicology reports.


Example documents annotated by domain experts, also known as a gold standard corpus, are needed in order to develop, train, and validate text mining tools. To this aim we designed and performed an annotation activity for the development of the corpus of treatment-related findings: the PretoxTM corpus.


A treatment-related finding expression enclose several named entities; the most relevant one is the abnormal effect detected; which depending on the study domain of the finding, can be given by a measurement, test, or examination named Study Test and an abnormal Manifestation result obtained for that study test; or by an abnormal Finding in study domains where there is no associated test or measurement (e.g., clinical, macroscopic and microscopic). Other related named entities that could be present to complete the treatment-related finding are; the Specimen of the abnormal observation, the Sex of the subject, the Group of subjects in which the observation was detected and the Dose level administration of the compound. Examples of sentences with treatment-related findings are: “The decrease in food consumption and body weight of the animals from the mid dose onwards is regarded as evidence of general toxicity.” and "At dose level 3, absolute and relative liver weights were increased in male rats.”.


Contributions: The PretoxTM corpus was developed by BSC, with the contribution of IMIM and a team of experts from the eTRANSAFE EFPIA partners.


License: Creative Commons Attribution-ShareAlike 4.0 International (cc by sa 4.0).


The PretoxTM resources have been developed as part of the eTRANSAFE project.


For more information about PretoxTM please visit:


PretoxTM Corpus Gitlab: https://gitlab.bsc.es/inb/etransafe/preclinical-toxicological-corpus/


PretoxTM central documentation: https://pretoxtm.gitlab.io/documentation/
DOI: 10.6084/m9.figshare.19729480.v2
title: Predicting short-term PM2.5 concentrations at fine temporal resolutions using a multi-branch temporal graph convolutional neural network

description:   
The compressed package (study code.zip) contains the code files implemented by an under review paper ("Predicting short-term PM2.5 concentrations at fine temporal resolutions using a multi-branch temporal graph convolutional neural network").
<br>
Among the study code.zip, main.py is the model code based on a multi-branch temporal graph convolutional neural network. tgcn.py is the temporal graph convolutional network. utils.py contains some functions of graph convolution process. input_data.py is data processing.
<br>
The zip file (study data.zip) provides an example of air quality data including PM2.5 concentrations and some meteorological data. input_data.zip also contains a N by N adjacency matrix, which describes the spatial relationship between air quality monitoring stations.
DOI: 10.5281/zenodo.10419358
title: Database of best practice for pondscape NbS for CC adaptation and mitigation

description: We built an inventory (database) of Nature-based Solutions (NbS) actions (creation, restoration, and management) in ponds and pondscapes (ponds at the landscape scale) in a diversity of social-ecological settings to assess the best practices. We formulated an online questionnaire that was shared with pond stakeholders. The questionnaire asked general (e.g., number of ponds, area of the pondscape, etc.) and specific (e.g., costs of the action, stakeholders involved, etc.) information on the NbS action implemented, and on 11 associated Nature's Contributions to People (NCPs). Among the NCPs we included, for instance, habitat creation for biodiversity, regulation of climate, learning or physical and physiological experiences. The database contains information gathered through the questionnaire, research papers and relevant web pages and platforms.

We used three different approaches to obtain information on NbS actions implemented in ponds/pondscapes and the associated NCPs mainly focusing on Europe and Uruguay: 1) the development of a user-friendly online questionnaire on NbS implemented in ponds/pondscapes and associated NCPs, which was shared in the form of a survey through the platform Survey Monkey with PONDERFUL members and pond Stakeholders; 2) the search of information in research papers; and 3) the search of information on web pages such as https://oppla.eu, https://renature-project.eu, https://climate-adapt.eea.europa.eu, https://una.city. We requested permissions from the respondents to make the data available.
DOI: 10.5281/zenodo.10419359
title: Database of best practice for pondscape NbS for CC adaptation and mitigation

description: We built an inventory (database) of Nature-based Solutions (NbS) actions (creation, restoration, and management) in ponds and pondscapes (ponds at the landscape scale) in a diversity of social-ecological settings to assess the best practices. We formulated an online questionnaire that was shared with pond stakeholders. The questionnaire asked general (e.g., number of ponds, area of the pondscape, etc.) and specific (e.g., costs of the action, stakeholders involved, etc.) information on the NbS action implemented, and on 11 associated Nature's Contributions to People (NCPs). Among the NCPs we included, for instance, habitat creation for biodiversity, regulation of climate, learning or physical and physiological experiences. The database contains information gathered through the questionnaire, research papers and relevant web pages and platforms.

We used three different approaches to obtain information on NbS actions implemented in ponds/pondscapes and the associated NCPs mainly focusing on Europe and Uruguay: 1) the development of a user-friendly online questionnaire on NbS implemented in ponds/pondscapes and associated NCPs, which was shared in the form of a survey through the platform Survey Monkey with PONDERFUL members and pond Stakeholders; 2) the search of information in research papers; and 3) the search of information on web pages such as https://oppla.eu, https://renature-project.eu, https://climate-adapt.eea.europa.eu, https://una.city. We requested permissions from the respondents to make the data available.
DOI: 10.5281/zenodo.10101332
title: Attentional Processing Differentiate Individual Capacity in Associative Learning

description: This repository contains:

 

- the behavioral raw data and the behavioral data coded according to the confusion matrix

- workflow for preprocessing (History file from BrainVision Analyzer version 2.2)

- the list of removed segments (per participant) after artifact rejection

- preprocessed EEG data (average by participant)
DOI: 10.5281/zenodo.10101333
title: Attentional Processing Differentiate Individual Capacity in Associative Learning

description: This repository contains:
 
- the behavioral raw data, and the procedure for performing the SDT analyses of the data with SPSS.
 
- preprocessed EEG data (average by participant)
DOI: 10.5281/zenodo.10534080
title: Attentional Processing Differentiate Individual Capacity in Associative Learning

description: This repository contains:

 

- the behavioral raw data and the behavioral data coded according to the confusion matrix

- workflow for preprocessing (History file from BrainVision Analyzer version 2.2)

- the list of removed segments (per participant) after artifact rejection

- preprocessed EEG data (average by participant)
DOI: 10.5281/zenodo.10534110
title: Identification of clinical disease trajectories in neurodegenerative disorders with natural language processing

description: This repository is linked to the study Identification of clinical disease trajectories in neurodegenerative disorders with natural language processing of which a preprint version can be found on this link. 

 

This study aids cross-disorder brain research by converting medical record summaries into clinical disease trajectories.
















 

Data reposited here describes the following data types: Donor general information, labelled sentences (training data), clinical disease trajectories, and neuropathological diagnosis metadata.
DOI: 10.5281/zenodo.10534111
title: Identification of clinical disease trajectories in neurodegenerative disorders with natural language processing

description: This repository is linked to the study Identification of clinical disease trajectories in neurodegenerative disorders with natural language processing of which a preprint version can be found on this link. 

 

This study aids cross-disorder brain research by converting medical record summaries into clinical disease trajectories.
















 

Data reposited here describes the following data types: Donor general information, labelled sentences (training data), clinical disease trajectories, and neuropathological diagnosis metadata.
DOI: 10.5281/zenodo.10263272
title: Dataset of Saccadic compression of time as a marker for Developmental Dyslexia
DOI: 10.5281/zenodo.10263273
title: Dataset of Saccadic compression of time as a marker for Developmental Dyslexia