cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/npt9r48zcz
title: Preparation for mitosis requires gradual CDK1 activation

description: RNA sequencing
4.5 h after double thymidine block release HeLa cells were treated for 2 h either with Cdk1 inhibitor (RO3306) or DMSO. RNA isolation, sequencing, quality control and mapping of reads were performed by the National Genomics Infrastructure at SciLifeLab, Sweden. 

Mathematical model
ODE based mathematical model for Cell Cycle
DOI: 10.17632/r6g4g5nmn2
title: Martian Simulant and Component Data

description: Data associated with Fackrell et al. 2020 Development of Martian regolith simulants: Potential and limitations of Martian regolith as an in-situ resource. Included here is the raw XRF, Mossbauer, Reflectance and XRD files. The XRD files includes both the Raw scan files and CIF files that can be used in Rietveld Software such as Topas, also includes the Topas project file for the internal standard which contains machine specific parameters needed to replicate refinement.
DOI: 10.6084/m9.figshare.6087197.v1
title: 99_V3V4_Silva_naive_bayes_classifier.qza

description: Naive bayes 16S classifier for QIIME2 trained on the V3-V4 region using the SILVA_128_QIIME_release.<br><b>Path to taxonomy file used for training:</b>SILVA_128_QIIME_release/taxonomy/taxonomy_all/99/taxonomy_all_levels.txt<br><br><b>The following primer pair was used:</b>F: S-D-Bact-0341-b-S-17, 5′-CCTACGGGNGGCWGCAG-3′,R: S-D-Bact-0785-a-A-21, 5′-GACTACHVGGGTATCTAATCC-3https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3592464/<br><b>Additional information available here:</b>https://github.com/forestdussault/AmpliconPipeline<br>
DOI: 10.17632/vjs8hd9xwj
title: 16S ribosomal RNA gene sequencing - Mice with or without antibiotics
DOI: 10.17632/7fxzdf992g
title: EVALUATION OF THE QUALITY OF LIVE OF THE SELF.VALENTE OLDER, ADULT PROVINCE OF AREQUIPA, PERU. 2023

description: The following information corresponds to a progress report on the systematic results of a research study that aims to determine the socioeconomic level and its influence on the quality of life of self-sufficient older adults, considering as older adults all individuals who are 60 years of age or older (Law No. 28803, Law of Older Adults, Peru) United Nations Population Fund (UNFPA). The variables are socioeconomic level and quality of life. Data collection instruments, namely questionnaires and surveys, were applied to a stratified randomized sample of 390 older adults distributed in households across 14 representative districts characterized by five socioeconomic levels. The project was submitted to the institutional ethics committee. Validation was conducted through a pilot test to verify the understanding and acceptance of the questions. For the validity and reliability in the correlation of the instrument's items, the Cronbach's alpha coefficient was used. Cronbach's alpha values between 0.70 and 0.90 were employed, indicating good internal consistency. The determination of Cronbach's alpha is recommended for one-dimensional scales with three to twenty items. For the assessment of the quality of life of the self-reliant older adult, the subject of this report, two dimensions were used, each with its own indicators, namely: 1.OPPORTUNITIES DIMENSION: Health, participation, and security indicators. Two questions were answered for each indicator, totaling six questions. The results showed the highest percentages in self-care of their health, participation in recreational activities with their family or friends, and the perception that they have achieved the goals they set in their life. (Table 1) 2.FACTORS DIMENSION: Environmental, socioeconomic, health, and behavioral indicators. Two questions each, totaling eight questions. (Table No. 1) As a result, the highest percentages indicate that urban growth worsens environmental conditions and health problems; that economic income is sufficient for the basic needs of an older adult; that their physical and mental abilities are consistent with their age; and that they are as happy as when they were younger.
DOI: 10.17632/p2bp3fsk86
title: CRYSTALpytools: A Python infrastructure for the Crystal code

description: CRYSTALpytools is an open source Python project available on GitHub that implements a user-friendly interface to the Crystal code for quantum-mechanical condensed matter simulations. CRYSTALpytools provides functionalities to: i) write and read Crystal input and output files for a range of calculations (single-point, electronic structure, geometry optimization, harmonic and quasi-harmonic lattice dynamics, elastic tensor evaluation, topological analysis of the electron density, electron transport, and others); ii) extract relevant information; iii) create workflows; iv) post-process computed quantities, and v) plot results in a variety of styles for rapid and precise visual analysis. Furthermore, CRYSTALpytools allows the user to translate Crystal objects (the central data structure of the project) to and from the Structure and Atoms objects of the pymatgen and ASE libraries, respectively. These tools can be used to create, manipulate and visualise complicated structures and write them efficiently to Crystal input files. Jupyter Notebooks have also been developed for the less Python savvy users to guide them in the use of CRYSTALpytools through a user-friendly graphical interface with predefined workflows to complete different specific tasks.
DOI: 10.6084/m9.figshare.24316621.v1
title: Convection-permitting simulations of current and future climates over the Third Pole region

description: The Third Pole (TP) region, known as the Asian Water Tower, provides a vital water resource for downstream regions. Here we introduce a first set of high-resolution climate change simulations that permit convection at approximately 3.3-km grid spacing with a focus on the TP region using the Icosahedral Nonhydrostatic Weather and Climate Model (ICON). Two 12-year simulations were performed, consisting of a retrospective simulation (2008-2020) with initial and boundary conditions from ERA5 reanalysis and a pseudoglobal warming projection driven by modified reanalysis-derived initial and boundary conditions by adding the monthly CMIP6 ensemble-mean climate change under the SSP5-8.5 scenario. ​Attached are the monthly mean precipitation and surface air temperature over the TP from both present-day and future climate simulations with ICON. These ICON-downscaled climate change simulations provide a high-resolution dataset to the CORDEX CPTP FPS community for the study of regional climate changes and impacts over the TP.
DOI: 10.17632/9t59zjtx3p
title: Data for: The Optomotor Response of Aging Zebrafish Reveals a Complex Relationship between Visual Motion Characteristics and Cholinergic System

description: This dataset was prepared for the article "The Optomotor Response of Aging Zebrafish Reveals a Complex Relationship between Visual Motion Characteristics and Cholinergic System". The main aim of the article was to investigate age-related changes in the motion detection of aging zebrafish (wild-type/AB-strain and achesb55/+). The dataset contains the optomotor responses of zebrafish to drifting gratings (i.e., first-order motion) with different contrast and spatial frequency levels. These responses were presented in the contour plots of Figure 2 and explained in the main text of the article. Overall, the findings suggested that contrast and spatial frequency has a significant effect on the optomotor responses, and in the contrast domain, the changes in the responses are dependent on the age and genotype of the zebrafish.
DOI: 10.6084/m9.figshare.1508534.v1
title: nTOF30T

description: Neutrons at the CUP-TOF with 30cm collimator diameter. Time (150million protons)
DOI: 10.17632/377sjwst7w
title: To pack or not to pack after laparoscopic sacrocolpopexy – a randomized controlled trial

description: Background: No data concerning effect of vaginal packing on surgical outcome of laparoscopic sacrocolpopexy (LSC) exist.
Objective: To test the hypothesis that vaginal packing after LSC is associated with reduced risk of pelvic organ prolapse recurrence.
Study design: This is a double-blind randomized controlled trial to investigate the effect of vaginal packing after LSC on surgical outcome in one-year follow-up. All women planned for LSC without suburethral sling surgery for pelvic organ prolapse stage &gt; 2 according to POPQ were included. Women that finally underwent any other surgery, concomitant vaginal surgery or their vagina was opened during the surgery (e.g. concurrent hysterectomy) were excluded. Of the 512 randomized women enrolled in the period 11/2016 – 6/2022, 455 (89%) women completed the one-year follow-up and were included in the analysis. Vaginal pack was inserted in 214 (47%) women. All women were preoperatively examined including POPQ and completed ICIQ-UI, PFDI and PISQ-12 questionnaires. They were randomized at the end of the surgery using envelope method. The surgical technique remained constant for the study period and was performed by four surgeons. One year after the surgery, the patients were reassessed including the POPQ, PGI-I and quality of life questionnaires. The primary outcome was composite surgical failure defined as a prolapse beyond hymen or symptomatic prolapse or retreatment after one year. Secondary outcomes included anatomical recurrence, quality of life and any late surgery-related complications. The data was analyzed using Wilcoxon two sample test, Median test, χ2 test and Fisher´s exact test. P value &lt;.05 was considered statistically significant. 
Results: The groups did not differ in most preoperative characteristics, except BMI, preoperative PFDI, because of POPDI, operative time and estimated blood loss, which all were higher in the packing group. The numbers of concomitant surgery on the uterus were comparable within the groups; 137 had prior hysterectomy, 249 underwent supracervical hysterectomy and 69 had sacrohysteropexy. No differences in the primary outcome nor any of the recorded variables including the POPQ points position, anatomical recurrence, patient global impression of improvement, quality of life questionnaires and complications were observed between the groups in one-year follow-up. Furthermore, no differences in surgical outcomes were observed even in subgroups according to concomitant surgery on the uterus. There was no difference in the rate of complications. No mesh exposure was observed.
Conclusion: Vaginal packing after LSC is not associated with improved surgical outcome expressed in anatomic recurrence, composite surgical failure or quality of life. In the light of Enhanced Recovery After Surgery recommendations, routine vaginal packing after laparoscopic sacrocolpopexy cannot not be justified.
DOI: 10.17632/cvhz9rk4gw
title: Data for: Temperature-regulated turnover of chromophoric dissolved organic matter in global dark marginal basins

description: The following Supplementary dataset 1 consists of data from 36 stations in the dark South China Sea and the adjacent Northwest Pacific (depth &gt; 200m), which are presented in a table: Cruise information, Station ID, Latitude, Longitude, Samping Depth, Potential temperature, Salinity, apparent oxygen utilization (AOU), aCDOM(254), aCDOM(325), S275-295, peak A, peak M, and peak T. Supplementary dataset 2 provides data for the dark Mediterranean (Med) Sea and Japan Sea sourced from open source database and literature .
DOI: 10.17632/hc7ggnjvpr
title: Newdatasett

description: Dataset description Dataset description Dataset description Dataset description
DOI: 10.17632/by8cmpc6f2
title: thermal conductivity

description: raw data on thermal conductivity of second generation composite
DOI: 10.17632/wpszpcftg2
title: Supplemental Material: Dynamic Time Warping for Lead-Lag Relationships in Lagged Multi-Factor Models

description: The supplemental material includes the equity, ETF, and futures data sets' performance metrics for the entire grid - rescaled to target volatility.
DOI: 10.17632/cstxvwnwcv
title: Data of fractal

description: These are the data used to calculate the fractal dimension of the porous media
DOI: 10.17632/zympd537wv
title: Data for : An Enhanced CNN-LSTM Based Multi-Stage Framework for PV and Load Short-Term Forecasting: DSO Scenarios

description: The provided data is linked to the paper titled "An Enhanced CNN-LSTM Based Multi-Stage Framework for PV and Load Short-Term Forecasting: DSO Scenarios." In this research, a novel multi-stage framework for PV and load Short-Term Forecasting (STF) is introduced, incorporating feature generation, feature selection, and optimal hyperparameter tuning preprocessing techniques. The final stage of the proposed framework presents an enhanced hybrid CNN-LSTM deep learning model architecture.

The effectiveness of this framework is evaluated and compared against other state-of-the-art approaches across various DSO scenarios, encompassing multiple single-phase residential loads, three-phase feeders, and secondary substations. Remarkably, the proposed framework exhibits significant reductions in forecasting errors.

The provided time series data serves the purpose of testing the proposed short-term forecasting methodology. It features a 5-minute resolution for one month (July 2021, a summer month) and consists of 8,920 data points for each data profile.

This data can be categorized into two main categories: load data and PV data. The load data includes three sub-categories representing different DSO scenarios: Multiple residential loads (with 100 and 400 residential loads in separate datasets), three-phase feeder load demands, and three-phase substation load demands. On the other hand, the PV data folder contains PV data for one month (July), along with corresponding weather data.
DOI: 10.6084/m9.figshare.3531011.v1
title: Supplement 1, Revision 1. A spreadsheet to estimate extinction times based on a sighting record, with corrected formulas for two methods.

description: File ListSupplement 1, original Inferring_Extinction_Timing.xls Inferring_Extinction_Timing.csv VBA_Macro_Inferring_Extinction_Timing.txt Supplement 1, Revision 1 VBA_Inferring_Extinction_Timing(version1.1).xlsm Inferring_Extinction_Timing(version1.1).csv VBA_Macro_Inferring_Extinction_Timing(version1.1).txt DescriptionSupplement 1, original Inferring Extinction Timing.xls The file contains a visual basic macro that runs in MS Excel. This macro calculates the upper boundary of 95 % confidence interval of the estimated extinction times, based on observed sightings, and according the seven methods evaluated in the paper. The program has been built and tested in MS Excel 2007 using Windows XP. Macros must be enabled to run the program. Please note that macros are not supported in MS Office 2008 for Macintosh. Inferring Extinction Timing.csv is a comma-delimited version of the main worksheet in the xls file. VBA Macro Inferring Extinction Timing.txt is a text file of the source code for the visual basic macro used in the xls model. Supplement 1, Revision 1 Inferring_Extinction_Timing (version 1.1).xlsm This file contains an amended version of the Visual Basic Macro for MS Excel presented by Rivadeneira et al. (2009, Ecology 90: 1291–1300 Ecological Archives E090-084-S1). The VBA macro is aimed to calculate the upper boundary of 95 % confidence interval of the estimated extinction times, based on observed sightings, and according the seven methods evaluated by Rivadeneira et al. (2009). The new version of the VBA macro provides corrected formulas for two sighting methods. The program has been built and tested in MS Excel 2011 for Mac OS X 10.7.5. Macros must be enabled to run the program. Note: ESA cannot guarantee the portability of Excel files. Inferring_Extinction_Timing (version 1.1).csv is a comma-delimited version of the main worksheet in the xls file. VBA_Macro_Inferring_Extinction_Timing (version 1.1).txt is a text file of the source code for the visual basic macro used in the xlsm model.
DOI: 10.17632/4pjv66mhdw
title: Dataset on characterisation and stability of gingival retraction cord lignocaine-adrenaline nanogel optimised using central composite design

description: The compatibility study on the pharmaceutical ingredients; lignocaine and adrenaline with the excipients was done using attenuated total reflectance-Fourier transform infrared (ATR-FTIR) and ultraviolet-visible (UV-Vis) spectroscopy were used for quantitative analysis of the mixtures. The optimisation of the lignocaine-adrenaline nanoemulsion (LANE) formulation was analysed using Design-Expert software version 11, a randomised Central Composite Design (CCD) Response Surface Methodology (RSM) where it computes the effects of the independent factors and was used around a fixed point for the LANE preparations. 
This research data encompasses the dental aspects of restorative treatment with focus on gingival retraction cords usage in gingival management division. This research was funded by The Ministry of Higher Education of Malaysia; Fundamental Research Grant Scheme (FRGS/1/2022/SKK11/UIAM/03/3).
The data and supplementary material are divided in 2 files:
The accuracy study of LANE at one-point concentration where The LANE suspension was tested with triplicate examination using Uv-Vis spectrophotometer. The result of percentage recovery of lignocaine and adrenaline for LANE were in acceptable level of accuracy which is from 98%-102% mean recovery of drug substances in accordance with United States Pharmacopeia (USP)-857 guideline.
The CCD dataset contains the independent (Xi) and dependent (Yi) variables used in CCD with levels and desirability constraint. Three independent variables (Xi) were considered in this study: Triacetin (w/w) % (X1), polysorbate 80 (Tween80) (w/w) % (X2), and polyethylene glycol 400 (PEG 400) (w/w) % (X3) where it displays the range chosen for each independent variable. Z-average (nm) (Y1), PDI (Y2), zeta potential (mV) (Y3), and pH (Y4) were the dependent variables (Yi) that were taken into consideration and the displays of the intended constraints for every dependent variable. The experiments were designed using 3 factors with 4 central point generating 18 runs as shown in dataset CCD system composition. Each experiment was conducted independently following the runs formulated from the CCD output accordingly. CCD then will produce prediction of optimised LANE formulation based on the Yi analysis and the comparison with the actual test of the selected LANE. Taking into consideration the lowest surfactant concentration possible, the variety of NE constitutions were derived from the calculation of the CCD and for those that did not exhibit drug precipitation or phase separation during preparation or after 72 hours of storage at 25°C were selected for nano-based gel (NBG). Following the constraint applied on the response variables in CCD optimisation criteria, the CCD gave out the numerical solutions of the independent variables with highest desirability of the triacetin, tween 80, and PEG400 at 5%, 14%, and 8% respectively. The CCD point prediction and the actual result of the optimised LANE all done in triplicates.
DOI: 10.17632/wxdc4pwrr4
title: Table 4. Training datasets Natural frequencies of beam using ANSYS

description: To simulate damage, cracks with a fixed width of 1 mm and a length of 25 mm were introduced, with varying depths of 2 mm, 4 mm, and 6 mm. Crack locations were varied from 0 to 700 mm in 25 mm increments from the fixed end, resulting in 87 damaged states. Including the undamaged state, a total of 88 cases were analyzed using numerical modal analysis in ANSYS. These variations in crack depth and location led to random changes in the beam’s natural frequencies. The bending Modes of Frequencies using ANSYS of Damaged states are tabulated below Table 4.
DOI: 10.6084/m9.figshare.19749745.v1
title: H358singlecells_8_PTMs_3_searchengines_percolator

description: Proteome Discoverer 2.4 output data demonstrating the presence of 8 protein post-translational modifications in single human H358 cancer cells.
DOI: 10.17632/sstykgcpy9
title: Phenolic content and antioxidant activity of flowers and stems of Retama raetam and Retama monosperma

description: Raw numerical data from phenolic content and antioxidant activity of flowers and stems of Retama raetam and Retama monosperma from which the graphs (Figure 1-6) and Tables (1-6) have been derived.
DOI: 10.17632/3sh76tw643
title: Vibroacoustic Response of Confined Rotating Flow: A Physically-Coupled Numerical Study

description: This dataset contains the input and configuration files for the fluid dynamic and vibroacoustic simulations of the mixer analyzed in the study "A Vibroacoustic Model for Confined Flows." The simulations follow a one-way coupling approach, starting with the fluid dynamic simulation, proceeding to the structural dynamic simulation, and concluding with the acoustic simulation based on the Ffowcs-Williams and Hawkings (FWH) analogy applied to the outer solid shell of the geometry.

The fluid dynamic simulation is performed using the open-source software OpenFOAM v10, employing the SST k-omega turbulence model. The simulation setup, the geometry and the results are included in the dataset inside the "fluid" folder. The structural simulation is conducted using CalculiX, an open-source finite element solver. It solves the dynamic equation in the solid domain using linear elasticity. All necessary input files for the structural analysis and the results are provided in the dataset inside the "solid" folder. The coupling between the fluid and solid simulations is managed using the open-source library preCICE, with a Nearest Neighbour mapping algorithm. Configuration files for the coupling setup are also included in the dataset in the "precice-config.xml" file.

This dataset enables full reproducibility of the simulations and includes the results of the fluid dynamic, structural, and acoustic simulations to support validation and comparison.
DOI: 10.17632/96jt894stz
title: Preferences of adolescents – A dataset containing linked experimental task measures and register data

description: Supplementary files for the article "Gender differences in preferences of adolescents: evidence from a large-scale classroom experiment" and its accompanying data article.
DOI: 10.17632/22362br9zv
title: Data for: Intact Verbal Fluency Abilities in the Broad Autism Phenotype

description: Verbal Fluency and Broad Autism Phenotype
DOI: 10.6084/m9.figshare.27115126.v1
title: Cannabis Expression Atlas v1

description: <b>Overview</b>This directory contains important files created during the construction of the <b>Cannabis Expression Atlas v1</b>.<b>Directory structure</b>Here, you can find the following files:<b>- `parquet_dir.tar.gz`:</b> A partitioned .parquet directory with the gene-level transcript abundances in TPM and bias-corrected counts created with the <i>arrow</i><i> </i>package.<b>- `se_atlas_gene.rda`: </b>A *SummarizedExperiment* object containing gene-level transcript abundances in TPM and bias-corrected counts, which are stored in the `gene_TPM` and `gene_counts` assays, respectively.<b>- `se_atlas_transcript.rda`:</b> A SummarizedExperiment* object containing transcript-level transcript abundances in TPM and counts, which are stored in the `tx_TPM` and `tx_counts` assays, respectively.The R data files (.rda) can be loaded into an R session using the `load()` function, as it is done for any R data file.