cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/pzv7p36v6c
title: REFOC: Parkfield focal mechanism catalog

description: Dataset S1. 
Supporting information for:
 
REFOC: A new focal mechanism calculation algorithm using inter-event relative radiation patterns: Application to the earthquakes in the Parkfield area

Yifang Cheng1,2, Richard M Allen1,2, and Taka'aki Taira1,2 

1 Department of Earth and Planetary Sciences, University of California, Berkeley, Berkeley, California, U.S.A.
2 Berkeley Seismological Laboratory, University of California, Berkeley, Berkeley, California, U.S.A.
DOI: 10.6084/m9.figshare.12561890.v1
title: JVASP-51728 to JVASP-53229

description: JARVIS-DFT input/output files
DOI: 10.6084/m9.figshare.26997382.v1
title: Online Integration of Capillary Electrophoresis and Dual Detector Taylor Dispersion Analysis via a 3D Printed Instrument - FIGURES

description: These are the data from figures in the manuscript "Online Integration of Capillary Electrophoresis and Dual Detector Taylor Dispersion Analysis via a 3D Printed Instrument". A citation will be added when the manuscript is accepted for publication
DOI: 10.17632/zybvystks3
title: Sostenibilidad NIIF

description: Interrelación entre la información financiera contenida en los IFRS de Contabilidad y la información financiera contenida en los IFRS de Sostenibilidad
DOI: 10.6084/m9.figshare.16337802.v1
title: Biometrics

description: Biometric data
DOI: 10.6084/m9.figshare.21295320.v1
title: SData3

description: Results of DIAMOND BLAST search of the "core" genes of our terpene BGCs against NCBI nr database
DOI: 10.6084/m9.figshare.28398899.v1
title: Data on Table 1. Demographics

description: Demographic data and M. abscessus infection shown in Table 1.
DOI: 10.6084/m9.figshare.3515324.v1
title: Supplement 1. R script for computation of functional diversity and functional specialization indices.

description: File List FDind.R -- R source code for indices computation Description The FDind.R R program computes the 3 functional diversity indices presented in Villéger et al. 2008 (Ecology 89:2290–2301), and the functional specialization index proposed by Bellwood et al. 2006 (Proc. R. Soc. B. 273:101–107). Computation requires R libraries « ape » and « geometry » and two matrices as inputs: « traits » (S*T): T traits values for the S species (at least 2 quantitative continuous traits, i.e., numeric values) « abundances » (C*S) : abundances for the S species in C communities (NA allowed) The function returns a dataframe (C*5) with Species richness (Nbsp), functional richness (FRic), functional evenness (FEve), functional divergence (FDiv) and functional specialization (FSpe) values for each of the C communities. A basic example is provided at the end of the script. Details on indices computation are presented in Appendix B.
DOI: 10.6084/m9.figshare.7093580.v1
title: Supplementary Material for: Administration of Thyrotropin-Releasing Hormone in the Hypothalamic Paraventricular Nucleus of Male Rats Mimics the Metabolic Cold Defense Response

description: <b><i>Background:</i></b> Cold exposure increases thyrotropin-releasing hormone (TRH) expression primarily in the hypothalamic paraventricular nucleus (PVN). The PVN is a well-known hypothalamic hub in the control of energy metabolism. TRH terminals and receptors are found on PVN neurons. We hypothesized that TRH release in the PVN plays an important role in the control of thermogenesis and energy mobilization during cold exposure. <b><i>Methods:</i></b> Male Wistar rats were exposed to a cold environment (4°C) or TRH retrodialysis in the PVN for 2 h. We compared the effects of cold exposure and TRH administration in the PVN on plasma glucose, corticosterone, and thyroid hormone concentrations, body temperature, locomotor activity, as well as metabolic gene expression in the liver and brown adipose tissue. <b><i>Results:</i></b> Cold exposure increased body temperature, locomotor activity, and plasma corticosterone concentrations, but blood glucose concentrations were similar to that of room temperature control animals. TRH administration in the PVN also promptly increased body temperature, locomotor activity and plasma corticosterone concentrations. However, TRH administration in the PVN markedly increased blood glucose concentrations and endogenous glucose production (EGP) compared to saline controls. Selective hepatic sympathetic or parasympathetic denervation reduced the TRH-induced increase in glucose concentrations and EGP. Gene expression data indicated increased gluconeogenesis in liver and lipolysis in brown adipose tissue, both after cold exposure and TRH administration. <b><i>Conclusions:</i></b> We conclude that TRH administration in the rat PVN largely mimics the metabolic and behavioral changes induced by cold exposure indicating a potential link between TRH release in the PVN and cold defense.
DOI: 10.17632/48mtr333f8
title: VNIR of Fe/Mg-rich clays

description: Dataset of visible/near-IR data of Fe/Mg-rich clays. They are mainly from submarine hydrothermal sites but there are a few terrestrial clays of similar mineralogy or composition that are here introduced for comparison with the main group of submarine clays. Articles related with this dataset are: 2018 Manuel Sánchez-Marañón, Javier Cuadros, Joseph R. Michalski, Manuel Melgosa, Vesselin Dekov. Identification of iron in Earth analogues of Martian phyllosilicates using visible reflectance spectroscopy: spectral derivatives and color parameters. Applied Clay Science 165, 264-276. DOI: https://doi.org/10.1016/j.clay.2018.08.016 2016 Javier Cuadros, Joe R. Michalski, Vesselin Dekov, Janice L. Bishop Octahedral chemistry of 2:1 clay minerals and hydroxyl band position in the near-infrared. Application to Mars. American Mineralogist, 101, 554-563. DOI: http://dx.doi.org/10.2138/am-2016-5366 2015 Joseph R. Michalski, Javier Cuadros, Janice L. Bishop, M. Darby Dyar, Vesselin Dekov, and Saverio Fiore Constraints on the crystal-chemistry of Fe/Mg-rich smectitic clays on Mars and links to global alteration trends Earth and Planetary Science Letters 427, 215-225. doi:10.1016/j.epsl.2015.06.020 2013 Javier Cuadros, Joseph R. Michalski, Vesselin Dekov, Janice Bishop, Saverio Fiore, M. Darby Dyar Crystal-chemistry of interstratified Mg/Fe-clay minerals from seafloor hydrothermal sites. Chemical Geology 360-361, 142-158. http://dx.doi.org/10.1016/j.chemgeo.2013.10.016
DOI: 10.26180/22137335.v1
title: Datasets of the manuscript by Ghedini & Marshall, titled <em>"Metabolic evolution in response to interspecific competition in a eukaryote"</em> (2023) Current Biology.

description: The zipfolder contains all data and code used for the analyses and to produce the figures of the paper. <br> <em>Summary of the work:</em> We experimentally evolved a focal phytoplankton species (<em>Dunaliella tertiolecta</em>) in 3 environments: competition-free ("none"), with a population of conspecifics ("intra") or in the presence of a community of three other species ("inter") for 10 weeks (~70 generations). After 35 and 70 generations we used common garden experiements to determine the evolution of cell morphology (size and shape), metabolism (photosynthesis, respiration, net energy over 24 hours) and demography (max. pop. growth rate, carrying capacity in terms of cell numbers, max. pop. biomass). Finally we tested whether metabolic theory predicts the evolution of these demographic traits (i.e., the scaling of population parameters with cell size across the evolved lineages). We started phase 1 (experimental evolution) with 20 lineages for each competition treatment but lost 13 lineages of the interspecific treatment because of contamination by one of the interspecific competitors in the first 6 weeks. To continue the experiment, we established an additional lineage from each of the remaining seven replicates (labelled as "B" in the data files) but lost another 4 for the same reason by the end of the experiment. Thus, the data collected during common garden tests are from 6 lineages evolved with interspecific competitors after 35 generations (the seventh lineage was found contaminated during the common garden and thus discarded), and 10 lineages after 70 generations (<em>n</em> = 20 for the competition-free and intraspecific treatment). Common gardens lasted 16 days and all lineages were phenotyped multiple times as populations grew (once per day for 12 and 13 days after 35 and 70 generations, respectively). <br> The datasets present the metabolic (photosynthesis, respiration), morphological (cell size and shape), and demographic data (population biovolume, cell abundance) of the focal population after 35 and 70 generations of experimental evolution alone, with intraspecific or interspecific competitors measured in common garden experiments.
DOI: 10.6084/m9.figshare.2067249.v1
title: s_typhi_wong_holt.aln.gz

description: A multi FASTA alignment of Salmonella Typhi genomes, mapped to CT18 ( AL513382) with repeat regions and mobile elements filtered out. It is an intermediate result from the Nature Genetics paper "Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events" by Vanessa Wong. This dataset is used as part of another paper on the SNP-sites software.
DOI: 10.6084/m9.figshare.29149889.v1
title: New insights on the uppermost Maastrichtian and Danian paleoenvironment from integrated magnetostratigraphy and multiproxy analyses of a shallow marine carbonate section, Northeastern, Brazil

description: This is a supplementary file related to the above title research paper submitted for publication in Global and Planetary Change Journal.
DOI: 10.6084/m9.figshare.4652536.v2
title: Madjedbebe Geoarchaeology & Lithics, 2012-2015 Excavations

description: Research compendium for Madjedbebe Geoarchaeology & Lithics, 2012-2015 Excavations
DOI: 10.17632/253wjnx2hp
title: Benchmark dataset and results for a real-world package delivery problem

description: This dataset contains all the instances employed in the experimentation described in the paper "Optimizing Package Delivery with Quantum Annealers: Addressing Time-Windows and Simultaneous Pickup and Delivery". 

Results discussed in the paper are also included in this dataset.
DOI: 10.17632/c8gsmz8p33
title: TARCER — A mathematica program for the reduction of two-loop propagator integrals

description: Abstract TARCER is an implementation of the recurrence algorithm of O.V. Tarasov for the reduction of two-loop propagator integrals with arbitrary masses to a small set of basis integrals. The tensor integral reduction scheme is adapted to moment integrals emerging in operator matrix element calculations. Title of program: TARCER V 1.0 Catalogue Id: ADIF_v1_0 Nature of problem Reduction of Feynman integrals in pertubative two-loop calculations. Versions of this program held in the CPC repository in Mendeley Data ADIF_v1_0; TARCER V 1.0; 10.1016/S0010-4655(98)00042-3 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/fgp97vndw4
title: Academic Resilience

description: Academic Resilience
DOI: 10.17632/yf2ggcz77d
title: Effect of Strain-Counterstrain in Combination With Phonophoresis in Patients with Temporomandibular Joint Dysfunction: A Quasi-Experimental Study.

description: BACKGROUND: Any instability related to the Temporomandibular joint or surrounding structures of the joint results in increasing pain .It is characterized by pain, reduced function, limitation in jaw mobility. It has great impact on quality of life of patients as its functional is directly related to feeding, emotional expression and social health etc. AIM: This study was focused on determining the effect of strain-counterstrain in combination with phonophoresis on pain and mouth opening in TMJ Dysfunction. METHOD: The study was included the age of 20-45 years in TMJ Dysfunction to allocate a single treatment group (strain- counterstrain and phonophoresis). Outcome Jaw Functional Limitation Scale-8 was used to measure the jaw disability, Numeric Rating Scale was used for pain . The outcomes were measured performed at baseline and after 3 weeks of treatment. Data was collected, analyzed and elucidate for results. DISCUSSION: This study to compares the effects of Strain-counterstrain and phonophoresis of pain and orofacial function of patients with TMD dysfunction. Strain-counterstrain and modality are treatment options for lessen the pain and correspondingly function of massters muscles. .RESULTS: The finding of the study showed that Strain-Counterstrain with Phonophoresis was found to be resulted and effective significant improvement in all the variables (P=&lt;0.05). CONCLUSION: This study proved Stain-Counterstrain and Phonophoresis as treatment to improve the symptoms in individual with TMJ dysfunction. KEY WORDS: Humans, Quality of Life, Phonophoresis,Temporomandibular Joint ,Temporomandibular Joint Dysfunction Syndrome, Mouth Pain,Outcome Assessment, Health Care.
DOI: 10.6084/m9.figshare.21938018.v2
title: List-scheduling vs. cluster-scheduling

description: A set of DAGs (task graphs) in the GXL file format, used in experiments for heuristic scheduling https://doi.org/10.1109/TPDS.2018.2808959. Includes task graphs used in practice as well as ones randomly generated through different techniques.
DOI: 10.6084/m9.figshare.22362808.v2
title: GDSC010 matrix results

description: GDSC010 matrix results
DOI: 10.6084/m9.figshare.23590107.v1
title: De novo assembly of Melilotus officinalis

description: This study reports a high-quality de novo assembly for Melilotus officinalis obtained at the chromosomal level using PacBio third-generation Hi-Fi sequencing. The generated high-quality genome assembly of Melilotus officinalis provides a key basis for accelerating the research and molecular breeding of this important forage crop. The genome is also valuable for future studies on legume forage biology, evolution, and genome-wide mapping of quantitative trait loci associated with the relevant agronomic traits.
DOI: 10.6084/m9.figshare.26682646.v1
title: Additional file 8 of A genome-wide study of the lipoxygenase gene families in Medicago truncatula and Medicago sativa reveals that MtLOX24 participates in the methyl jasmonate response

description: Additional file 8. Table S6. Conserved structural domains in Medicago sativa LOXs.
DOI: 10.6084/m9.figshare.7976528.v3
title: mass spectrometry, ELISA, western blotting and immunoassay data

description: Table 1: list of proteins co-precipitated with TRKB.Table 2: list of interactions disrupted by fluoxetine.figure 1: in vivo WB/ELISA, CABS docking, AP2M:peptide ELISAfigure 2: in vitro/vivo WB/ELISA, surface TRKBfigure 3: in vitro/ex vivo ELISA, validation with siAP2Mfigure 4: in vitro ELISA/immunostaining
DOI: 10.17632/w7m3bhnvcr
title: LCS ScR

description: These are the Extended data for the study titled "A comprehensive systematic scoping review for Physiotherapy Interventions for people living with Long COVID". 
Underlying data 
Scoping final dataset.xls
Scoping SPSS.sav
Extended data 1: Scoping Reviews (PRISMA-ScR) Checklist
Extended data 2: 27-score PRISMA checklist
Extended data 3: 25-score CONSORT Checklist
Extended data 4: 22-score STROBE checklist 
Extended data 5: 13-score CARE checklist 
Extended data 6: 23-score AGREE checklist 
Extended data 7: 33-score SPIRIT checklist 
Extended data 8: Recommended Physiotherapy and rehabilitation strategies summary 
Competing interests
The authors declared that they have no known competing financial interests or personal relationships that could have appeared to influence the work that will be reported in this paper. The scoring checklist has been prepared from the guidelines of EQUATOR NETWORK, and the copyright states, “No material may be modified, edited or taken out of context such that its use creates a false or misleading statement or impression as to the positions, statements or actions of the EQUATOR Network.” We didn’t make any modifications to the original guideline, we made a score out of the guideline checklist.
DOI: 10.6084/m9.figshare.4557352.v1
title: Data from A phosphorus threshold for mycoheterotrophic plants in tropical forests

description: Raw data used in this study (.xlsx file). Different data types are enclosed in different tabs in the worksheet.
DOI: 10.6084/m9.figshare.14204696.v1
title: Supplemental Table S2

description: This table is shows all annotated features using LC-MS/MS- and <sup>1</sup>H-NMR- based metabolomics analysis.
DOI: 10.6084/m9.figshare.22732682.v1
title: V2R clades classification

description: Text files named according to the V2R family sublades contain the sequences names that belong to this subclade.
DOI: 10.6084/m9.figshare.28375271.v1
title: Supplementary Material for: Step-down therapy using vonoprazan for giant gastric polyps in long-term proton pump inhibitor administration

description: Introduction
Gastroesophageal reflux disease (GERD) is diagnosed based on bothersome symptoms, such as heartburn, and the presence of mucosal breaks endoscopically. Treatments that suppress gastric acid, such as proton pump inhibitor (PPI) and vonoprazan, are frequently administered. Several studies reported regarding the safety and side effects of long-term PPI administration, including an association with gastric polyps. We report a case of maintained symptom resolution and significantly shrank gastric polyps by performing step-down therapy, which is minimal acid-suppressing treatment.
Case Presentation
A female patient in her 60s taking proton pump inhibitor (PPI) for reflux esophagitis for &gt;10 years. An upper gastrointestinal endoscopy revealed two gastric polyps measuring 20 mm and 10 mm. She was referred to our hospital for resection, but narrow-band imaging revealed a non-neoplastic lesion. PPI was discontinued and step-down therapy using vonoprazan was performed. During the treatment, a lifestyle guidance app (Muneyake PRO) was used to record daily heartburn symptoms, oral medication status, and daily life status. She was worried that her symptoms would worsen due to discontinuation, but she gained her understanding when the use of the app to monitor her symptoms was explained. The app was useful for understanding the progress of symptoms and the status of oral medication. Step-down therapy was performed only twice after PPI discontinuation, and symptoms have not worsened and follow-up endoscopy revealed significant gastric polyp shrinkage.
Conclusion
We experienced a case in which minimal acid-suppression treatment; step-down therapy using vonoprazan resulted in GERD symptom control and significant gastric polyp shrinkage.
DOI: 10.6084/m9.figshare.c.3626525_d6.v1
title: Additional file 1: Table S1. of Farewell to GBM-O: Genomic and transcriptomic profiling of glioblastoma with oligodendroglioma component reveals distinct molecular subgroups

description: Targeted amplicon DNA sequencing coding exons. (XLSX 91 kb)
DOI: 10.17632/sc5vjygtr2
title: Data for: Growth hormone supplementation may improve the pregnancy rate and endometrial receptivity for patients aged &gt;40 years undertaking in vitro fertilization

description: This study included women aged &gt; 40 years (range, 40–43 years) with previous experience of POR or poor ovarian reserve (POSEIDON group 4) undergoing their first ART treatment in our institution between January 2009 and March 2014. These patients were given the option of using GH, but may or may not have elected to utilize GH during the cycle when initially offered (due to costs or other concerns). This cohort study evaluated 182 cycles with and 160 without GH supplementation.
DOI: 10.6084/m9.figshare.14433590.v1
title: Trained deep learning models

description: Trained models for four deep learning based segmentation pipelines are included here. These include Unet models for the Plantseg and the Unet+Watershed and Cellpose pipelines and a MaskRCNN model for the MRCNN+Watershed pipeline.<br>
DOI: 10.6084/m9.figshare.26170162.v1
title: Infrared data.zip

description: Infrared CO image data
DOI: 10.17632/ggv2cd88my
title: A cross sectional study on psychoactive drug use among school-going adolescents: Data from drug burdened hot-spots in Malaysia.

description: This data belongs to a sample of 3382 students from 5 different zones, gazetted as drug-burdened hotspots in Malaysia. The data consists of the sample's demographic characteristics and the prevalence rate of psychoactive drug use among school-going adolescents. The Alcohol, Smoking, and Substance Involvement Screening Test (ASSIST) was utilized to measure the frequency of drug consumption by type and the adolescents’ involvement in drug abuse and drug-related behaviour.
DOI: 10.6084/m9.figshare.14221940.v2
title: data in Tokara Strait

description: data used in Tokara Strait<br>
DOI: 10.6084/m9.figshare.22560115.v1
title: Data for Takahashi et al., 2023: 'Polarization of magnetospheric ULF waves excited by an interplanetary shock on 27 February 2014' Submitted to JGR Space Physics.

description: The data to make each of the figures are provided as IDL save files which can be opened with the 'restore' command.
DOI: 10.6084/m9.figshare.27918621.v2
title: Supplementary file to Exploring barriers to LARC utilization among the pastoralist women in southern Ethiopia: Qualitative study approach, 2024

description: This study used a qualitative descriptive study design included thirty-three pastoralist women for focus group discussions and twelve key informants for IDI, who were purposefully selected from three pastoral districts. Participants were interviewed and explored the primary barriers to using LARC. The principal researcher led the interview using a semi-structured interview guide that allowed for flexibility in exploring issues added by an audio tape. The approach included a broad inductive thematic analysis, with significant concepts derived from transcripts.
DOI: 10.6084/m9.figshare.27979307.v1
title: <b>A comprehensive dataset on cytotoxicity of ionic liquids</b>

description: A comprehensive dataset of cytotoxicity of 1227 ILs, compiled from 158 research papers and including 3837 data entries.The following information is provided: substance name, empirical formula, CAS, SMILES, molecular weight, cytotoxicity value, details on the experimental setup, and reference to the original publication.
DOI: 10.17632/r92y33x5pp
title: Dataset for Turbulent Flow in Binary Interaction: PTV

description: This part covers the collected data for performing the technique Particle Tracking Velocimetry (PTV). The subfolders contain raw images in format .tiff for both cases, images showing the particles' detection after running the pertinent Matlab code, and the tracking of particles along all images. Additionally, MatLab codes are provided to generate data of particle detection and tracking.
DOI: 10.17632/v7ym5f9y9z
title: Long-term alterations in anxiety, depression, and sleep quality after bariatric surgery

description: This observational cohort study aims to explore the timing of psychological health and sleep quality alterations and investigate the correlation between anxiety, depression, and sleep quality after bariatric surgery for patients with overweight and obesity.
DOI: 10.17632/ww2nj5842c
title: Protein 3D structure models

description: This data set consists of a large number of protein 3D structure models can be used to train a machine learning method for protein model quality assessment and protein model refinement. The 3D models are generated by the RaptorX software package (see https://github.com/j3xugit/RaptorX-3DModeling).
DOI: 10.17632/zphhggj2ch
title: NDWI2 (Sentinel 2 Satellite) DataSet for maping Changes from Grasslands to Arable Lands

description: Supllementary Material for Scientific Publication