cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5120647.v1
title: Supplementary Material for: Evaluation of a Novel Anti-Mucin 1 (MUC1) Antibody (PankoMab) as a Potential Diagnostic Tool in Human Ductal Breast Cancer; Comparison with Two Established Antibodies

description: <i>Aim: </i>PankoMab is a novel antibody that recognizes a tumor-specific epitope of Mucin 1 (MUC1). The aim of this study was the evaluation of PankoMab as a potential diagnostic tool and its comparison with two established antibodies against MUC1 in human ductal breast cancer. <i>Materials and Methods: </i>Breast carcinomas were obtained from 82 patients. MUC1 expression and hormone receptor status were determined by immunohistochemistry of paraffin-embedded material. <i>Results: </i>PankoMab revealed strong correlation to hormone receptor expression. DF3 showed no correlation with grading, lymph node involvement and/or estrogen receptor (ER) expression. In the subgroup of lymph node-positive and ER-negative tumors, we saw a significantly reduced DF3 staining in G3 tumors compared to G2 tumors. VU-4-H5 showed increased staining intensity in correlation with increased grading. In addition, we also identified a significantly higher expression of the VU-4-H5 epitope in lymph node-positive carcinomas compared to carcinomas without lymph node involvement. <i>Conclusion: </i>PankoMab revealed strong correlation to hormone receptor expression in ductal carcinoma of the breast. VU-4-H5 showed increased staining intensity in correlation with increased grading and lymph node involvement. PankoMab and VU-4-H5 staining could be a useful combination in ductal breast cancer prognosis by immunohistochemistry.
DOI: 10.17632/rs38hnh5ft
title: Supplementary Data: Bridging Computational Stratigraphy and Reservoir Simulation for Geologically Realistic High-resolution Reservoir Modeling

description: The two reservoir models in this dataset are part of the supplementary material of the paper “Bridging Computational Stratigraphy and Reservoir Simulation for Geologically Realistic High-resolution Reservoir Modeling” published in SPE Journal. https://doi.org/10.2118/212244-PA. Please cite this paper if you use this dataset. Feel free to email the corresponding author if you have questions. - Authors: Boxiao Li, Lewis Li, Xian-Huan Wen, Tao Sun - Affiliation: Chevron Technical Center, Houston, TX, USA - Corresponding author: Boxiao Li; email: boxiao.li at chevron.com The following two synthetic fluvial-deltaic reservoir models are built from Computational Stratigraphy (CompStrat), a state-of-the-art earth-modeling method that captures the key heterogeneities in subsurface reservoirs through modeling of the detailed flow and sediment transportation processes in various depositional environments. The model in "CompStratFluvialDeltaicModel.zip" is a sector model (as shown in "CompStratFluvialDeltaicModel.JPG"): - Dimension: 40x40x2801 - DX = DY = 20 m for all cells, DZ varies - Number of defined cells: 4,479,071 - Model properties included: grainsize, porosity, permeability, shale body label, shale sub-body label, score, and class - Latest update: July 15th, 2023 The model in "CompStratFluvialDeltaicModel_Large.zip" is a much larger model (as shown in "CompStratFluvialDeltaicModel_Large.JPG"). The previous sector model is taken from (20,20) to (119, 119). - Dimension: 201x201x2801 - DX = DY = 20 m for all cells, DZ varies - Number of defined cells: 113,090,331 - Model properties included: grainsize - Latest update: July 15th, 2023 The models are shared in three formats: RESQML v2.0.1, Eclipse EGRID, and Eclipse ASCII. Note that the grids in different formats loaded in different software may be mirror-flipped, or the origin location may be different. The “RESQMLv2” folder contains the RESQML files (“.epc” and “.h5” files). Do not change the file names as there may be internal mapping between the “.epc” and “.h5” files. RESQML is an upstream oil and gas data-exchange standard that facilitates reliable, automated exchange of data among software packages used in subsurface workflows, for example for earth and reservoir modeling workflows. https://www.energistics.org/resqml-data-standards The “Eclipse_EGRID” folder contains the “.egrid” file (the model grid) and the “.GRDECL” file (the model properties). The property values of undefined cells are set to -9999. The “Eclipse_ASCII” folder contains four “.GRDECL” files describing the model grid and properties in ASCII format. The property values of undefined cells are set to -9999.
DOI: 10.6084/m9.figshare.13614605.v1
title: ACME_Paper_rds_files

description: RDS datasets from García-Castro et al, ACME dissociation: a versatile cell fixation-dissociation method for single-cell transcriptomics<br><br>https://www.biorxiv.org/content/10.1101/2020.05.26.117234v2.full
DOI: 10.6084/m9.figshare.19091426.v1
title: Internal coordinates for 7-AIH+ (aug-cc-pVDZ)

description: Structured dataset containing the Z-Matrix representation of the molecular geometries of protonated 7-azaindole extracted from Newton-X NAMD trajectories. The Z-Matrices are represented as flattened vectors with 42 columns, where 15 correspond to bond lengths, 14 correspond to angles, and the last 13 columns contains the dihedral angles. The geometries were extracted from Newton-X outputs and converted into the Z-matriix representation using the ULaMDyn package.
DOI: 10.6084/m9.figshare.23576031.v1
title: Anthropogenic change exposure scores for individual Common Cuckoo, <em>Cuculus canorus</em>

description: <strong>risk_scores_per_bird-season.csv </strong> Mean and accumulated composite anthropogenic change exposure scores for 239 <em>Cuculus canorus</em> bird-seasons. Change exposure was calculated by combining ten years of tracking data from the British Trust for Ornithology Cuckoo Tracking Project with threat maps capturing direct mortality threats, habitat change, and climate change. Dataset includes metrics of autumn migratory route longitude at a bird-year level; an additional column indicates whether the bird-season is considered data-poor. <br> <strong>aggregated_risk_scores_per-site.csv</strong> Anthropogenic change exposure scores aggregated across bird-seasons from each of the eleven breeding site locations, and associated breeding site population change (calculated using BTO Bird Atlas Frequency Indices). <br> <strong>aggregated_risk_scores_per-site_data_poor_removed.csv</strong> As above, but where aggregated anthropogenic change exposure scores have been calculated excluding data-poor bird-seasons.
DOI: 10.6084/m9.figshare.3413671.v1
title: Survey resource based on UTAUT model for acceptance of mobile learning among students and teachers

description: This document presents an instrument based on the TAM model (Davis, 1989) and UTAUT Model (Venkatesh, Morris, Davis, & Davis, 2003) and adapted to measure the acceptance of mobile technologies among students and teachers by adding two additional constructs: reliability and recommendation in order to measure the level of necessity of a new tool to certificate Apps (Briz-Ponce, Juanes-Méndez, & García-Peñalvo, 2014a).
DOI: 10.6084/m9.figshare.5241733.v1
title: Erratum: Aspirin plus Clopidogrel as Secondary Prevention after Stroke or Transient Ischemic Attack: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Antiplatelet agents are the mainstay for secondary prevention of non-cardioembolic stroke. This systematic review examined the safety and efficacy of short-, middle-, and long-term aspirin in combination with clopidogrel as secondary prevention of stroke or transient ischemic attack (TIA) of presumed arterial origin. <b><i>Methods:</i></b> PubMed, EmBase, and CENTRAL were searched up to May 2014. Randomized controlled trials (RCTs) that compared aspirin plus clopidogrel versus aspirin or clopidogrel as secondary prevention of stroke or TIA of arterial origin were included. The analyses were stratified into short-term (≤3 months), middle-term (&gt;3 months and &lt;1 year), and long-term (≥1 year). Outcomes were compared using risk ratio (RR) and 95% confidence interval (95% CI). <b><i>Results:</i></b> Eight RCTs (20,728 patients) were included in the overall analysis. Compared with aspirin or clopidogrel alone, the complete analysis of all the data indicated that the combination therapy significantly reduced the risk of stroke recurrence (RR, 0.82; 95% CI 0.70-0.96, p = 0.01) and major vascular events (RR, 0.84; 95% CI 0.73-0.96, p &lt; 0.01). But the risk of hemorrhagic stroke (RR, 1.59; 95% CI 1.08-2.33, p = 0.02) and major bleeding (RR, 1.83; 95% CI 1.37-2.45, p &lt; 0.01) was increased. No RCT studied middle-term combination therapy. The analyses were therefore stratified into only two subgroups, short- and long-term treatment. Stratified analysis of short-term treatment showed that relative to monotherapy, the drug combination reduced the risk of stroke recurrence (RR, 0.69; 95% CI 0.59-0.81, p &lt; 0.01) and did not increase the risk of hemorrhagic stroke (RR, 1.23; 95% CI 0.50-3.04, p = 0.65) and major bleeding events (RR, 2.17; 95% CI 0.18-25.71, p = 0.54). Short-term combination therapy was associated with a significantly lower risk of major vascular events (RR, 0.70; 95% CI 0.69 to 0.82, p &lt; 0.01). Stratified analysis of long-term treatment revealed that the combination treatment did not decrease the risk of stroke recurrence (RR, 0.92; 95% CI 0.83-1.03, p = 0.15), but was associated with a significantly higher risk of hemorrhagic stroke (RR, 1.67; 95% CI 1.10-2.56, p = 0.02) and major bleeding events (RR, 1.90; 95% CI 1.46-2.48, p &lt; 0.01). Long-term combination therapy failed to reduce the risk of major vascular events (RR, 0.92; 95% CI 0.84-1.03, p = 0.09). <b><i>Conclusions:</i></b> Compared with monotherapy, short-term aspirin in combination with clopidogrel is more effective as secondary prevention of stroke or TIA without increasing the risk of hemorrhagic stroke and major bleeding events. Long-term combination therapy does not reduce the risk of stroke recurrence, and is associated with increased major bleeding events. The clinical applicability of the findings of this systematic review, however, needs to be confirmed in future clinical trials.
DOI: 10.6084/m9.figshare.5997656.v2
title: A basic total evidence matrix for basal angiosperms — combining Soltis et al. (2011) with Doyle & Endress (2010)

description: This fileset includes a curated, reduced version of the matrix used by Soltis et al. (2011) that I generated in 2012 for a colleague at the Swedish Museum of Natural History, who was looking for plant matrices that can be used for total-evidence dating. The experiment failed, and the project was abondoned (see Footnote 7 of the linked post).<br><br>The taxon set was reduced to match the set used in Sareela et al. (2007), respectively Doyle & Endress (2010).<br><br>The final matrix combines data from placeholder-genera and well-covered gene regions (nuclear-encoded 18S rDNA, 25S rDNA; mitochondrial <i>atp1</i>, <i>matR, nad5; </i>plastid <i>atpB, matK, ndhF, psbB...psbH, rbcL, rpoC2) </i>and corresponding morphological data as extra partition<i>.<br> <br></i><b>Content<br></b>— An 7z-archive (http://www.7-zip.org/) including the matrices, a fully annotated version generated with and optimised for Mesquite (http://mesquiteproject.wikispaces.com/) and a simple-NEXUS version for MrBayes.<br>— Several draft graphs as PDF: a ML tree inferred from the matrix (bootstrap support annotated) with RAxML (00all.ML...); a Bayesian total evidence generated with MrBayes by my colleague (01b.withFossils....); a neighbour-net based on morphological distance inferred from the morphological partition in the combined matrix.<br>— A tabulation of the checked data, with some curating information, in two formats: CSV (for general compatibility), and xlsx (for further functionality, includes summarising Pivot-table)— Additional figures (v. 2) shown in blogposts using this matrix or subsets of it (see provided links)<br><br>Cited literature (make sure to include as <b>addititional</b> reference when re-using the data provided here)<br>Sareela JM, Rai HS, Doyle JA, ... , Briggs BG, Graham SW. 2007. Hydatellaceae identified as a new branch near the base of the angiosperm phylogenetic tree. Nature 446:312–315. — no data from this study has been used for generating the matrix.<br>Soltis DE, Smith SA, Cellinese N, ..., Donoghue MJ, Soltis PS. 2011. Angiosperm phylogeny: 17 genes, 640 taxa. American Journal of Botany 98:704–730 — this is the main source, but not exclusive source, for the genetic data (some data has been updated, and blanks filled)<br>Doyle JA, Endress PK. 2010. Integrating Early Cretaceous fossils into the phylogeny of living angiosperms: Magnoliidae and eudicots. Journal of Systematics and Evolution 48:1–35. — this is the source of the morphological data<br><b></b><br><br><br><br><br>
DOI: 10.6084/m9.figshare.7601888.v1
title: Feasibility of integrated HIV-CVD care in LMICs- scoping review data.xlsx

description: This is a dataset of all variables extracted in a scoping review of the feasibility of multi-level, integrated HIV and cardiovascular disease (CVD) care in low and middle income countries. Additional information for determining risk of bias of the selected studies are also included.
DOI: 10.17632/j26vc4c25s
title: Appendix 1. New media literacy scale (Koc & Barut, 2016)

description: This is the original scale of new media literacy (Koc & Barut, 2016), which is used in a research "The Important Role of New Media Literacy (NML) in Vietnam: Adaptation and Validation of the NML Scale"
DOI: 10.25442/hku.28945076.v1
title: <i>Supporting data for "Investigation of the mechanisms of bottom-up temporal attention: Causes of and interventions for the Emotion-induced blindness effect"</i>

description: This study tested the causes of and interventions for the Emotion-induced blindness (EIB) effect. The dataset includes (1) affective ratings of emotional images which cause the EIB effect, (2) the performance of attention tasks (RSVP task and recognition task) that test the EIB effect and (3) the EEG brain waves during the attention task.
DOI: 10.6084/m9.figshare.19241982.v2
title: Dataset - F1000 - 109708.xlsx

description: This research was conducted on Islamic money market mutual funds registered with the OJK using three years (2015-2018) with a total sample of 36 Islamic money market mutual funds. There is one dependent variable in this research, namely the Islamic money market mutual funds’ performance, and three independent variables: asset allocation policy, investment manager performance, and risk level. The asset allocation policy variable was measured using Sharpe’s Asset Class Factor Model, the investment manager performance using the Treynor-Mazuy Model, the level of risk using the Standard Deviation Formula, and the performance of the Islamic money market mutual funds using the Shape Ratio
DOI: 10.17632/3y8xsx2wxb
title: Typing health: the potential of text messaging to manage atopic dermatitis

description: Supplementary material for the article 'Typing Health: The Potential of Text Messaging to Manage Atopic Dermatitis'.
DOI: 10.17632/b3ny46b2w2
title: Karenia brevis monthly bloom frequency maps on the West Florida Shelf

description: This dataset provides monthly frequency maps of Karenia brevis blooms (red tides) on the West Florida Shelf, 1978-1986, 2003-2024.

It integrates data from two satellite sensors:
- CZCS-derived maps: Covering 1978-1986, based on CZCS Nimbus-7 data
- MODIS-derived maps: Covering 2003-2019, based on MODIS Aqua data
- VIIRS-derived maps: Covering 2012-2014, based on VIIRS SNPP data

Two spatial resolutions are provided:
- 1 km resolution, geographic extent: 88.0°W to 81.0°W, 23.0°N to 31.0°N
- 0.1° resolution, geographic extent: 87.5°W to 81.0°W, 25.0°N to 30.5°N

File Formats:
- TIFF (.tif): Each file contains monthly bloom frequency values ranging from 0 to 1, indicating the proportion of days within the month when a bloom was detected at each pixel. Pixels with no valid observations are marked as NaN.
- PNG (.png): Visualization-ready images using a 'jet' colormap, where values from 0 to 1 are mapped to a color gradient (blue to red) for rapid visual inspection.

Each file name follows the format:
YYYY_MM_monthly_frequency_SENSOR_RESOLUTION.EXT
Where:
YYYY_MM = year and month of observation
SENSOR = MODIS or VIIRS
RESOLUTION = 1km or 0.1deg
EXT = file extension (.tif or .png)
DOI: 10.6084/m9.figshare.12886943.v4
title: Datasets of Insulin, phenylalanine kinetic and integrin-associated proteins in MHD and Rac1 mKO mice

description: Insulin sensitivity and phenylalanine kinetic (Ra, Rd and MCR) values are shown in maintenance hemodialysis (MHD) patients versus not-MHD but insulin resistant subjects;<br>Content of the Integrin-associated proteins ILK, PINCH1, parvin, FAK and Rac1 as well as dystrophin and the proteins of the traditional insulin-stimulated glucose uptake pathway Akt and PINCH1 is shown for MHD and controls, and Rac1 mKO and wild type mouse models. <br><br>
DOI: 10.6084/m9.figshare.14332802.v1
title: Effectiveness of Narrative Therapy on Adult Attachment Styles and Expressivity in Low Marital Satisfaction

description: This paper aims to investigate the effectiveness of narrative therapy on adult attachment styles and expressivity in low marital satisfaction
DOI: 10.6084/m9.figshare.22122656.v1
title: Dietary knowledge assessment among the patients with type 2 diabetes in Madinah: A cross-sectional study

description: dataset related to study.
DOI: 10.6084/m9.figshare.22361269.v1
title: Supplementary Material for: Improving the Clinical Interpretation of Transcutaneous Carbon Dioxide and Oxygen Measurements in the Neonatal Intensive Care Unit

description: <b><i>Introduction:</i></b> Transcutaneous blood gas monitoring allows for continuous non-invasive evaluation of carbon dioxide and oxygen levels. Its use is limited as its accuracy is dependent on several factors. We aimed to identify the most influential factors to increase usability and aid in the interpretation of transcutaneous blood gas monitoring. <b><i>Methods:</i></b> In this retrospective cohort study, transcutaneous blood gas measurements were paired to arterial blood gas withdrawals in neonates admitted to the neonatal intensive care unit. The effects of patient-related, microcirculatory, macrocirculatory, respiratory, and sensor-related factors on the difference between transcutaneously and arterially measured carbon dioxide and oxygen values (ΔPCO<sub>2</sub> and ΔPO<sub>2</sub>) were evaluated using marginal models. <b><i>Results:</i></b> A total of 1,578 measurement pairs from 204 infants with a median [interquartile range] gestational age of 27<sup>3</sup>/<sub>7</sub> [26<sup>1</sup>/<sub>7</sub>–31<sup>3</sup>/<sub>7</sub>] weeks were included. ΔPCO<sub>2</sub> was significantly associated with the postnatal age, arterial systolic blood pressure, body temperature, arterial partial pressure of oxygen (PaO<sub>2</sub>), and sensor temperature. ΔPO<sub>2</sub> was, with the exception of PaO<sub>2</sub>, additionally associated with gestational age, birth weight Z-score, heating power, arterial partial pressure of carbon dioxide, and interactions between sepsis and body temperature and sepsis and the fraction of inspired oxygen. <b><i>Conclusion:</i></b> The reliability of transcutaneous blood gas measurements is affected by several clinical factors. Caution is recommended when interpreting transcutaneous blood gas values with an increasing postnatal age due to skin maturation, lower arterial systolic blood pressures, and for transcutaneously measured oxygen values in the case of critical illness.
DOI: 10.6084/m9.figshare.25345678.v2
title: Figure 3 Raw Data - 2022-10-27 - 1330

description: 2022-10-27 181207 S PH 50x25um-1330cm-1 2mW-TA 87nm-hBNonRuCl-nanspecdata
DOI: 10.6084/m9.figshare.26616214.v6
title: <b>MAMMALS IN URBAN CENTERS: a dataset from the perspective of the media in Brazil</b>

description: The continuous growth of the urban population, coupled with habitat loss, has resulted in unanticipated interactions between animals and humans in urban centers. In this study, we investigated the presence of mammals in urban centers through newspaper reports on websites. Specifically, we examined: i) the frequency of photographic records, ii) the temporal trends (2001 to 2021) and spatial trends (Brazilian regions and states) of the records, iii) the orders, families, and species most frequently reported in urban centers. We searched for news on the Google platform (http://www.google.com.br). We employed combinations of the keywords "mammals in urban centers," "mammals found in the city," and "mammal found in the municipality." We excluded repeated news items, sites that experienced technical problems during the search period, and those that did not cover the topic. We compiled a total of 733 websites. Of the total number of sites, 89% (n = 652) had photographic records. The records spanned from 2002 to 2021, with 73% (n = 534) occurring in the last four years. The Southeast (41%, n = 302), South (25%, n = 182), and Midwest (18%, n = 129) regions stood out. The animals recorded belonged to 55 mammal species (16 vulnerable and 3 endangered), distributed in 22 families and 10 orders. This is the first study that utilize websites for diagnosing the mammal fauna present in urban centers in Brazil. The dataset generated here could aid in understanding the occurrence of mammal species in the urban environment.
DOI: 10.6084/m9.figshare.29019131.v3
title: Indicator data of each city in Zhejiang

description: <pre>This dataset compiles multi-dimensional economic indicators (A1-C6) across Hangzhou, Ningbo, etc., covering outputs, investments, and consumption metrics for urban building economy analysis. </pre>
DOI: 10.6084/m9.figshare.3567735.v1
title: Supplement 2. Data and references for human height data used in Fig. 4B and F.

description: File List HumanHeightWikipediaJan192011.csv<br> HumanHeightDataFile.csv<br> HeightHumanDataRefsFeb32011.doc Description HumanHeightWikipediaJan192011.csv contains height data originally downloaded from Wikipedia “Human Height” page, Jan. 19, 2011. HumanHeightDataFile.csv contains average per country male and female human height data with country name and latitude used for Figure 4. HeightHumanDataRefsFeb32011.doc contains publications and other sources for average per country human height data, based on sources listed on Wikipedia, supplemented with addition information and sources.
DOI: 10.6084/m9.figshare.4813882.v1
title: Extensive impact of non-antibiotic drugs on human gut bacteria

description: Supplementary data files for a study to quantify the impact of drugs on human gut commensals.
DOI: 10.6084/m9.figshare.6981842.v1
title: Model output and meta-analysis data from INTERFACE paper

description: Model output and meta-analysis data from model-experiment comparison that came out of INTERFACE workshop. Includes output from five soil carbon models and a meta-analysis of warming and litter addition experiments.<br>Code is posted at: https://github.com/bsulman/INTERFACE-model-experiment-synthesis
DOI: 10.6084/m9.figshare.9868193.v1
title: Monitoring spawning migrations of potamodromous fish species via eDNA

description: Dataset for the titled publication. The file includes data of environmental variables, eDNA concentrations obtained from filtered water samples and fish counts, all obtained during the 2017 spawning season of <em>Alburnus mento</em> and <em>Vimba vimba </em> in the river Zeller Ache. Environmental variables and eDNA samples were measured / taken at two points in the rivers (data sheets ZA1 and ZA3), fish were counted in seven river sections, and daily discharge was provided by an automatic measurement station at the most upstream river section.<br>See the "readme" tab for detailed information contained in the two tabs named "ZA1" and "ZA3".