cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.myqtjj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((100.528 1.133184, 100.457723 1.127616, 100.389178 1.11105, 100.324052 1.083893, 100.26395 1.046816, 100.210351 1.00073, 100.164576 0.946771, 100.127751 0.886269, 100.100783 0.820712, 100.084334 0.7517160000000001, 100.078811 0.680979, 100.084347 0.610243, 100.100807 0.54125, 100.127785 0.475698, 100.164616 0.415201, 100.210393 0.361248, 100.26399 0.315169, 100.324086 0.278097, 100.389203 0.250945, 100.457736 0.234382, 100.528 0.228816, 100.598264 0.234382, 100.666797 0.250945, 100.731914 0.278097, 100.79201 0.315169, 100.845607 0.361248, 100.891384 0.415201, 100.928215 0.475698, 100.955193 0.54125, 100.971653 0.610243, 100.977189 0.680979, 100.971666 0.7517160000000001, 100.955217 0.820712, 100.928249 0.886269, 100.891424 0.946771, 100.845649 1.00073, 100.79205 1.046816, 100.731948 1.083893, 100.666822 1.11105, 100.598277 1.127616, 100.528 1.133184))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040758-251120083545085/datasets/export for details.
DOI: 10.15468/dl.x7ucr6
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mexidrilus postspermathecatus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040756-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9f5ntk
title: Occurrence Download

description: A dataset containing 725 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Abisara bifasciata"
 ]
}

 The dataset includes 725 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040757-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/icpsr38618.v2
title: Federal Justice Statistics Program: Charges Filed Against Defendants in Criminal Cases in District Court, 2020
title: Version 2

description: The data contain records of charges filed against defendants whose cases were filed by United States attorneys in United States district court during fiscal year 2020. The data are charge-level records, and more than one charge may be filed against a single defendant. The data were constructed from the Executive Office for United States Attorneys (EOUSA) Central Charge file. The charge-level data may be linked to defendant-level data (extracted from the EOUSA Central System file) through the CS_SEQ variable, and it should be noted that some defendants may not have any charges other than the lead charge appearing on the defendant-level record. The Central Charge and Central System data contain variables from the original EOUSA files as well as additional analysis variables. Variables containing identifying information (e.g., name, Social Security Number) were either removed, coarsened, or blanked in order to protect the identities of individuals. These data are part of a series designed by Abt Associates and the Bureau of Justice Statistics. Data and documentation were prepared by Abt Associates.
description: Datasets: 
DS1: Federal Justice Statistics Program: Charges Filed Against Defendants in Criminal Cases in District Court, 2020
description: Charges filed against defendants in United States district court during fiscal year 2020.
DOI: 10.3886/icpsr38618
title: Federal Justice Statistics Program: Charges Filed Against Defendants in Criminal Cases in District Court, 2020
title: Archival Version

description: The data contain records of charges filed against defendants whose cases were filed by United States attorneys in United States district court during fiscal year 2020. The data are charge-level records, and more than one charge may be filed against a single defendant. The data were constructed from the Executive Office for United States Attorneys (EOUSA) Central Charge file. The charge-level data may be linked to defendant-level data (extracted from the EOUSA Central System file) through the CS_SEQ variable, and it should be noted that some defendants may not have any charges other than the lead charge appearing on the defendant-level record. The Central Charge and Central System data contain variables from the original EOUSA files as well as additional analysis variables. Variables containing identifying information (e.g., name, Social Security Number) were either removed, coarsened, or blanked in order to protect the identities of individuals. These data are part of a series designed by Abt Associates and the Bureau of Justice Statistics. Data and documentation were prepared by Abt Associates.
description: Datasets: 
DS1: Federal Justice Statistics Program: Charges Filed Against Defendants in Criminal Cases in District Court, 2020
description: Charges filed against defendants in United States district court during fiscal year 2020.
DOI: 10.15468/dl.hrre4q
title: Occurrence Download

description: A dataset containing 1581 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyparrhenia subplumosa",
 "Continent is Africa"
 ]
}

 The dataset includes 1581 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040759-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/qaufut
title: PAN-00165903 - terra sigillata kom type Drag. 37 (EG)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00165903&lt;/p&gt;
description: Modified: 2025-10-22T16:14:40+02:00
DOI: 10.15468/dl.wunbp7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((100.935 1.140184, 100.864723 1.134616, 100.796178 1.11805, 100.731052 1.090893, 100.670949 1.053816, 100.61735 1.00773, 100.571575 0.953771, 100.53475 0.893269, 100.507782 0.827712, 100.491334 0.7587159999999999, 100.48581 0.687979, 100.491347 0.617243, 100.507807 0.548249, 100.534784 0.482697, 100.571615 0.422201, 100.617393 0.368248, 100.670989 0.322169, 100.731086 0.285097, 100.796203 0.257945, 100.864736 0.241382, 100.935 0.235816, 101.005264 0.241382, 101.073797 0.257945, 101.138914 0.285097, 101.199011 0.322169, 101.252607 0.368248, 101.298385 0.422201, 101.335216 0.482697, 101.362193 0.548249, 101.378653 0.617243, 101.38419 0.687979, 101.378666 0.7587159999999999, 101.362218 0.827712, 101.33525 0.893269, 101.298425 0.953771, 101.25265 1.00773, 101.199051 1.053816, 101.138948 1.090893, 101.073822 1.11805, 101.005277 1.134616, 100.935 1.140184))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040763-251120083545085/datasets/export for details.
DOI: 10.15468/dl.snn3sf
title: Occurrence Download

description: A dataset containing 26315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-73.63792 41.13411,-73.46379 41.13411,-73.46379 41.26408,-73.63792 41.26408,-73.63792 41.13411))"
 ]
}

 The dataset includes 26315 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040762-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.79p6g9
title: Occurrence Download

description: A dataset containing 1913 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Olavius algarvensis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1913 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040764-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.td8fay
title: Occurrence Download

description: A dataset containing 71246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orchidaceae",
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 71246 records from 223 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040740-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34894/vdhkfn
title: Data entry + forum activity log data, birth certificates Suriname

description: The 'data entry + forum activity log data' contains anonymized information on the transcription process of birth certificates from the Surinameses civil registry. &lt;BR&gt;
 &lt;BR&gt;
The birth civil certificates were transcribed by 654 volunteers on the Dutch crowdsourcing platform HetVolk from September 2021 until February 2022. The project was completed in 4 batches to account for small changes in the available information on birth certificates. A fifth "puzzle" batch was created for birth certificates that were hard to read. To support data entry, a forum was hosted on Ning. Here volunteers could ask for help, discuss interesting findings, and find look-up tables. 171 volunteers in total posted at least one message on the forum. &lt;BR&gt;
 &lt;BR&gt;
User accounts on Het Volk and Ning were linked by Thunnis van Oort and Rick Mourits. First, matches were established by automatically matching individuals with an indentical name or e-mail address. Second, we manually checked for matches that we might have missed due to small spelling variations. Third, all established matches were verified by hand. Last, we anonymized the user names to make the data suitable for analysis in line with the GDPR. &lt;BR&gt;
 &lt;BR&gt;
Data entry log data contains information on the: &lt;BR&gt;
- volunteer (anonymized userID, linked to forum post log data) &lt;BR&gt;
- project (batch 1-4, puzzle) &lt;BR&gt;
- itemID (anonymized certificate identifier) &lt;BR&gt;
- entry (entry, skipped, or impossible certificate) &lt;BR&gt;
- date &lt;BR&gt;
- time &lt;BR&gt;
 &lt;BR&gt;
Forum post log data contains information on the: &lt;BR&gt;
- volunteer (anonymized userID, linked to data entry log data) &lt;BR&gt;
- reaction_on (whether posts replied to a former userID) &lt;BR&gt;
- topicID (anonymized post topic) &lt;BR&gt;
- entry (original post or reply) &lt;BR&gt;
- date &lt;BR&gt;
- time
DOI: 10.15468/dl.q7w63y
title: Occurrence Download

description: A dataset containing 1285027 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Melastomataceae"
 ]
}

 The dataset includes 1285027 records from 841 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040695-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yud2a
title: Occurrence Download

description: A dataset containing 2908 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is UCDavis - Western USA - Monarch Butterflies - 1892-2005",
 "Geometry POLYGON((-178.67369 16.49517,-54.87701 16.49517,-54.87701 65.99265,-178.67369 65.99265,-178.67369 16.49517))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1902-2025"
 ]
}

 The dataset includes 2908 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040765-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17867925
title: GSE269885: RNA-seq analysis of human CD19 CAR T cells overexpressing RAB5

description: Full metadata and both raw and processed datafiles are available through NCBI GEO (accession #GSE269885)

 

Chimeric antigen receptor (CAR) T cells (CARTs) are engineered T cells designed to target specific molecules on the surface of cancer cells. Using a continuous antigen exposure (CAE) assay to model this interaction, we observed that tumors can capture CAR molecules, leaving the CARTs devoid of surface-expressed CARs and unable to kill tumors after repeated challenges. Overexpression of Rab5, a key regulator of endocytosis, prevents the loss of CARs and enhances CARTs activity. Rab5 significantly increased the endocytic recycling of T cells without causing other perturbations to CART function. Interestingly, we observed membrane protrusions on the CART cell surface, which disappeared after multiple tumor challenges. Rab5 overexpression maintained these protrusions after multiple tumor engagements, and the presence of membrane protrusions correlated with tumor clearance. In vivo, Rab5-expressing CARTs demonstrated improved activity and were able to clear an otherwise recalcitrant mesothelin-expressing solid cancer. These findings suggest that engineering CARTs with Rab5 overexpression could enhance the clinical efficacy of CAR T cell therapy.

 

Human CD4+ and CD8+ T cells from four different healthy donors were used simultaneously for CART generation. Cells were transduced with either 19BBz-tEGFR or 19BBz-Rab5 vectors. To profile baseline differences between these two populations, CARTs expanded in vitro for 9 days were collected for analysis. To profile differences under repeated tumor challenges, beginning at day 9, CARTs were co-cultured with K.19.GFP cells at a 1:2 ratio (CARTs effector:target). Every 2 days, target cells were replenished to rechallenge CARTs. After the third round of target replenishment, at 48 hours post-plating, CD3+CAR+ cells were enriched. Dead cells were removed using the Dead Cell Removal Kit (Miltenyi Biotec). T cells were isolated from target K562 cells with using the Dynabeads™ Untouched™ Human T Cells Kit (Invitrogen). Surface CAR-positive cells were sorted by flow cytometry. A portion of each sample was reserved to test Rab5 overexpression via immunoblotting. For RNA-sequencing analysis, while another portion with 1x106 cells from each sample were flash-frozen in liquid nitrogen and sent to BGI Genomics for sample QC, mRNA isolation, RNA library preparation and sequencing. To address potential variability in genes with low read count, filtering was performed to omit genes in which more than 4 samples had a read count <10. Genes with an adjusted p-value <0.05 were considered significant, and those with fold changes of >3 were defined as differentially expressed genes (DEGs) for the present study.
DOI: 10.5281/zenodo.17867924
title: GSE269885: RNA-seq analysis of human CD19 CAR T cells overexpressing RAB5

description: Full metadata and both raw and processed datafiles are available through NCBI GEO (accession #GSE269885)

 

Chimeric antigen receptor (CAR) T cells (CARTs) are engineered T cells designed to target specific molecules on the surface of cancer cells. Using a continuous antigen exposure (CAE) assay to model this interaction, we observed that tumors can capture CAR molecules, leaving the CARTs devoid of surface-expressed CARs and unable to kill tumors after repeated challenges. Overexpression of Rab5, a key regulator of endocytosis, prevents the loss of CARs and enhances CARTs activity. Rab5 significantly increased the endocytic recycling of T cells without causing other perturbations to CART function. Interestingly, we observed membrane protrusions on the CART cell surface, which disappeared after multiple tumor challenges. Rab5 overexpression maintained these protrusions after multiple tumor engagements, and the presence of membrane protrusions correlated with tumor clearance. In vivo, Rab5-expressing CARTs demonstrated improved activity and were able to clear an otherwise recalcitrant mesothelin-expressing solid cancer. These findings suggest that engineering CARTs with Rab5 overexpression could enhance the clinical efficacy of CAR T cell therapy.

 

Human CD4+ and CD8+ T cells from four different healthy donors were used simultaneously for CART generation. Cells were transduced with either 19BBz-tEGFR or 19BBz-Rab5 vectors. To profile baseline differences between these two populations, CARTs expanded in vitro for 9 days were collected for analysis. To profile differences under repeated tumor challenges, beginning at day 9, CARTs were co-cultured with K.19.GFP cells at a 1:2 ratio (CARTs effector:target). Every 2 days, target cells were replenished to rechallenge CARTs. After the third round of target replenishment, at 48 hours post-plating, CD3+CAR+ cells were enriched. Dead cells were removed using the Dead Cell Removal Kit (Miltenyi Biotec). T cells were isolated from target K562 cells with using the Dynabeads™ Untouched™ Human T Cells Kit (Invitrogen). Surface CAR-positive cells were sorted by flow cytometry. A portion of each sample was reserved to test Rab5 overexpression via immunoblotting. For RNA-sequencing analysis, while another portion with 1x106 cells from each sample were flash-frozen in liquid nitrogen and sent to BGI Genomics for sample QC, mRNA isolation, RNA library preparation and sequencing. To address potential variability in genes with low read count, filtering was performed to omit genes in which more than 4 samples had a read count <10. Genes with an adjusted p-value <0.05 were considered significant, and those with fold changes of >3 were defined as differentially expressed genes (DEGs) for the present study.
DOI: 10.15468/dl.5fau7y
title: Occurrence Download

description: A dataset containing 3294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyperthelia dissoluta",
 "Continent is Africa"
 ]
}

 The dataset includes 3294 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040766-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ndphnh
title: Occurrence Download

description: A dataset containing 24537 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pycnonotus capensis (Linnaeus, 1766)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 24537 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003479-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sn4wy3
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acalypha pippenii McVaugh"
 ]
}

 The dataset includes 45 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008677-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wtqprr
title: Occurrence Download

description: A dataset containing 2059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parmelina pastillifera (Harm.) Hale",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 2059 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037198-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhj8gb
title: Occurrence Download

description: A dataset containing 2768 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-180.12058 -9.14823,-6.87942 -9.14823,-6.87942 60.14823,-180.12058 60.14823,-180.12058 -9.14823))",
 "HasCoordinate is true",
 "TaxonKey is Sciurus griseus Ord, 1818",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2768 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003479-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6fshry
title: Occurrence Download

description: A dataset containing 4502 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parmelina tiliacea (Hoffm.) Hale",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 4502 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037201-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ogjx4c
title: Occurrence Download

description: A dataset containing 871 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pterois antennata (Bloch, 1787)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 871 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003481-150410134957023/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukzvyt
title: Occurrence Download

description: A dataset containing 1266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parmelina quercina (Willd.) Hale",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 1266 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037204-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4tcnp8
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lychnophora harleyi H.Rob."
 ]
}

 The dataset includes 25 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0169465-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.