cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/vhcev-hdq05
title: Drp1

description: Drp1
description: <strong>Tilt Series Date:</strong> 2013-01-01</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Drp1</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> David Chan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> purified</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-01-01-38/rawdata/</p>drp1_275_8defocus0020.mrc,  Tilt Series (Pixel Size 0.4 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-01-01-38/rawdata/drp1_275_8defocus0020.mrc"
        > <i class="download icon"></i> Download </a></p>

        20_2k_full.rec,  Reconstruction (Pixel Size 1.6 nm), 1.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-01-01-38/3dimage_57467/20_2k_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15483/2585033
title: 2022 Central California Travel Study

description: # 2022 Central California Travel Study
The 2022 Central California Travel Study collected demographic and travel pattern information to better understand household travel behavior in the state’s San Joaquin Valley region.

## Data Collection Agency
The Fresno Council of Governments conducted the household travel study in collaboration with metropolitan planning organizations in Fresno, Kern, Kings, Madera, Merced, San Joaquin, Stanislaus, and Tulare counties in California.

## Survey Methodology
The two-part study consisted of a survey and a travel diary. The survey gathered data on household demographic composition and typical travel behaviors. The travel diary gathered individual travel data during a specified travel period for all members of a given household.

## Travel Diary Methods
Households with smartphones were encouraged to complete their travel diaries using the rMove smartphone app for up to seven consecutive days. Households without smartphones or those unwilling to participate via smartphone completed their travel diaries online (using the web-version of rMove) or by calling the survey call center. These households reported travel for one day (Tuesday, Wednesday, or Thursday).

## Recruitment Sampling Methods
The majority of the recruitment was conducted via address-based sampling, a type of probability sampling, with a focus on reaching county-level targets in collaboration with metropolitan planning organizations in the region.

Supplemental sampling methods, primarily non-probability, were employed during all waves of data collection to improve survey representation. The supplemental sample included targeted outreach to hard-to-survey populations via transit rider email lists; local housing authorities; Nichols Research, a California-based market research firm; and the Ipsos™ KnowledgePanel, an online random probability panel.

See the documentation for more information about sampling and weighting.

## Survey Records, Data, and Documentation
In total, 7,406 households completed 19,084 surveys representing 150,012 trips across 42,567 person-days.
DOI: 10.15468/dl.weapeh
title: Occurrence Download

description: A dataset containing 16165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Geometry POLYGON((-80.4399 43.45367,-80.37948 43.45367,-80.37948 43.4859,-80.4399 43.4859,-80.4399 43.45367))"
 ]
}

 The dataset includes 16165 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047073-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/07s4e-twz36
title: Vibrio cholerae

description: 11apr16a_
description: <strong>Tilt Series Date:</strong> 2011-04-16</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> 2740-80</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 0.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
<strong>Collaborators and Roles:</strong> Mekalanos</p>
  mpa2011-04-16-11_slicer9271.jpg: Vibrio choleraeT6SS (15 nm)ring (8.6 nm) mpa2011-04-16-11_slicer9272.jpg: Vibrio cholerae .  T6SS (17 nm) mpa2011-04-16-11_slicer9273.jpg: Vibrio cholerae .  T6SS (15 nm, 17 nm) .  filament bundle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2011-04-16-11/rawdata/</p>11apr16a_VC9_016_orig.st,  Tilt Series (Pixel Size 0.0 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2011-04-16-11/rawdata/11apr16a_VC9_016_orig.st"
        > <i class="download icon"></i> Download </a></p>

        11apr16a_VC9_016.rec,  Reconstruction (Pixel Size 0.0 nm), 226.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2011-04-16-11/3dimage_34770/11apr16a_VC9_016.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15483/2585035
title: 2022 Kauai Ground Transportation Survey

description: # 2022 Kauai Ground Transportation Survey
The 2022 Kauai Ground Transportation Survey was designed to improve understanding of the transportation preferences of residents and visitors of the Hawaiian island of Kauai.

For residents of Kauai, the survey focused on mode-choice decisions for commute, leisure, and shopping activities and whether they would consider using alternative modes instead of driving if such options were available. For visitors, the survey focused on whether they would consider alternatives to rental cars if such options were available. Ultimately, survey results will inform the development of sustainable transportation strategies for the island.

## Data Collection Agency
NREL and the Kauai Office of Economic Development conducted the study as part of the U.S. Department of Energy's Energy Transitions Initiative Partnership Project.

## Survey Methodology
The survey was conducted July—October 2022. Respondents were recruited via direct email invitation, a press release on the Kauai County website and Facebook page, and posters at community outreach events.

## Survey Records, Data, and Documentation
Survey records include 1,437 participants.
DOI: 10.15483/2585036
title: 2022 National Household Travel Survey - Oahu Add-On

description: # 2022 National Household Travel Survey – Oahu Add-On
The Oahu add-on survey supplements the 2022 National Household Travel Survey (NHTS) with additional household samples and detailed travel behavior for an assigned travel day.

## Data Collection Agency
The Federal Highway Administration conducted the NHTS and corresponding add-on surveys.

## Survey Methodology
The 2022 NHTS, which covered assigned travel dates from January 2022 to January 2023, collected data on the demographic and socioeconomic composition of households as well as detailed information on travel behavior nationwide.

State transportation departments and metropolitan planning agencies—like the Oahu Metropolitan Planning Organization—had the opportunity to purchase extra household samples as part of the NHTS add-on program. These additional samples, along with national samples collected in the add-on areas, are compiled for use in transportation planning, forecasting, and research.

## Survey Records, Data, and Documentation
Survey records include 7,397 participants from 3,170 households in Oahu, Hawaii, as well as detailed information on the travel behavior of each household for a designated 24-hour period. The survey logged over 14,868 trips totaling 165,000 vehicle miles traveled.
DOI: 10.22002/cyqq0-m7h75
title: Vibrio deltaVCA1092

description: V. cholerae strain CO8 (delta VCA1092)
description: <strong>Tilt Series Date:</strong> 2014-04-03</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O1 biovar El Tor</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
  aba2014-04-03-3_slicer3805.jpg: off-center flagellum in Vibrio cholerae cytoplasmic receptor deletion (VCA1092) aba2014-04-03-3_slicer3806.jpg: lump near off-center flagellum in Vibrio cholerae cytoplasmic receptor deletion (VCA1092)
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-03-3/rawdata/</p>delta1092VibrioatlasB0002.mrc,  Tilt Series (Pixel Size 0.33 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-03-3/rawdata/delta1092VibrioatlasB0002.mrc"
        > <i class="download icon"></i> Download </a></p>

        delta1092VibrioatlasB0002_part121_2.rec,  Reconstruction (Pixel Size 1.32 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-03-3/3dimage_40896/delta1092VibrioatlasB0002_part121_2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15483/2585037
title: 2022 Next-Generation National Household Travel Survey - Origin-Destination Data Addendum for the Oahu Region

description: # 2022 Next-Generation National Household Travel Survey – Origin-Destination Data Addendum for the Oahu Region
The 2022 Next-Generation National Household Travel Survey – Origin-Destination Data Addendum for the Oahu Region covers the Hawaiian island of Oahu and five counties in surrounding islands.

An addendum to the nationwide version of the study conducted in 2019, this regional survey provided additional information and spatial granularity about people’s movements to, from, and within the areas under study.

## Data Collection Agency
The survey was conducted for the Oahu Metropolitan Planning Organization.

## Survey Methodology
Data were collected in two zones: the core area (census blocks in the island of Oahu) and the halo area (five counties in adjacent Hawaiian islands).

All trips were assigned an origin zone and a destination zone, as well as a travel mode, purpose, and distance. Sociodemographic information related to age, income, and gender was also collected.

## Survey Records, Data, and Documentation
Survey records include 1,154,167,619 trips.
DOI: 10.15483/2585038
title: 2023 University of Puerto Rico at Mayagüez National Institute for Congestion Reduction Study

description: # 2023 University of Puerto Rico at Mayagüez National Institute for Congestion Reduction Study
The 2023 University of Puerto Rico at Mayagüez National Institute for Congestion Reduction (NCIR) Study provided insight into the travel patterns and associated energy consumption of participants.

Study results helped researchers identify opportunities for the development of policies that could incentivize the use of alternative modes of travel such as transit and micromobility. Such travel modes reduce congestion by reducing the miles traveled by privately owned vehicles in urban and rural areas.

The [National Institute for Congestion Reduction](https://nicr.usf.edu/) provides multimodal congestion reduction strategies through real-world deployments that leverage advances in technology, big data science, and innovative transportation options to optimize the efficiency and reliability of the transportation system for all users.

## Data Collection Agency
The University of Puerto Rico at Mayagüez conducted the study.

## Survey Methodology
The study was conducted in Spanish.

Data collection was enabled via the open-source [NREL OpenPATH platform](https://www.nrel.gov/transportation/openpath). The resulting dataset consists of partially automated travel diaries—combining sensed and surveyed data reflecting patterns of multimodal, end-to-end, individual human mobility—as well as demographic and socioeconomic information from the 17 participants.

## Survey Records, Data, and Documentation
Study records include 17 participants. The total number of trips was 458 and total non-air-miles traveled was approximately 1,469.
DOI: 10.15468/dl.zzk4uf
title: Occurrence Download

description: A dataset containing 7660 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spiraea hypericifolia"
 ]
}

 The dataset includes 7660 records from 342 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047067-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/8g3ya-phn36
title: Acetonema longum

description: Vegetative septa of A. longum
description: <strong>Tilt Series Date:</strong> 2011-04-18</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Matson grew the cells</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-04-18-2/3dimage_25326/</p>11apr18d_gr2_004_full.rec,  Reconstruction (Pixel Size 1.9 nm), 104.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-04-18-2/3dimage_25326/11apr18d_gr2_004_full.rec"
        > <i class="download icon"></i> Download </a></p>

        11apr18d_gr2_004.mrc,  Tilt Series (Pixel Size 0.95 nm), 237.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-04-18-2/rawdata/11apr18d_gr2_004.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2jt8m-s0f35
title: B subtilis bMD208

description: (Ω) cat::Pxyl-gfp-mreB  ΔponA::kan 30 mM xyloseNotes from Mike Dion:clump mildly in liquid LB.  This can be easily disrupted by very mild vortexing, or growing them in the presence of 10 mM MgCl2.  The clumping is the result of their ponA deletionbMD208 and 210 are Graumann's strains that I just recently knocked ponA out of.  These strains have the mut1 variant of GFP that, in addition to mut1, is also L236P.  I determined this by sequencing both of Gruamann's strains.  Both of these grow very slow on LB agar (bMD208 grows worse than bMD210, on LB agar)
description: <strong>Tilt Series Date:</strong> 2013-12-04</p>
<strong>Data Taken By:</strong> Matt Swulius</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> bMD208</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Ethan Garner and Mike Dion</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2013-12-04-22/rawdata/</p>120413_bs208_40013.mrc,  Tilt Series (Pixel Size 0.42 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2013-12-04-22/rawdata/120413_bs208_40013.mrc"
        > <i class="download icon"></i> Download </a></p>

        120413_bs208_40013_part61_15.rec,  Reconstruction (Pixel Size 1.68 nm), 861.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2013-12-04-22/3dimage_35523/120413_bs208_40013_part61_15.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/bb4gc-13t04
title: M. xanthus (Dk1622)

description: Imaged for Lotte in search of T6SS. This is the WT strain that they work with.
description: <strong>Tilt Series Date:</strong> 2012-08-17</p>
<strong>Data Taken By:</strong> Matt Swulius</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 23000x. </p>
<strong>Microscope:</strong> UCLA Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Lotte Soregard-Anderson</p>
  mst2012-08-17-33_slicer4450.jpg: Granule
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2012-08-17-33/rawdata/</p>081712_2_DK1622_14.mrc,  Tilt Series (Pixel Size 1.11 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2012-08-17-33/rawdata/081712_2_DK1622_14.mrc"
        > <i class="download icon"></i> Download </a></p>

        081712_2_DK1622_14_part129_2.rec,  Reconstruction (Pixel Size 2.22 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15483/2585040
title: Baseline vs. DER Scenario

description: Projections and associated uncertainty estimates are generated for a variety of user-selectable EV charging sessions, electricity tariffs, subsidy levels, revenue schemes, charging station configurations, and on-site solar and/or storage options. The outputs are presented in CHIP's web portal browser in the form of easily interpretable graphics (interactive graphs and bar charts) that facilitate convenient comparison among different scenarios to aid decision-making. The user should bring assumptions for modeling on simulation planning horizon, number of EV charging sessions per year, electricity costs (energy and demand charge rates; flat versus time-of-use rate), site capital costs (equipment for EV chargers and transformer), solar PV, and battery energy storage (kW).
DOI: 10.22002/rp1hv-8mk89
title: HIV deltaNef MOLT

description: NLdeltaNefATG, M1, deltaNef, MOLT
description: <strong>Tilt Series Date:</strong> 2014-04-29</p>
<strong>Data Taken By:</strong> Luiza Mendonca</p>
<strong>Species / Specimen:</strong> HIV and deltaNef</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 60.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> fixed 1% formaldehyde</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-04-29-9/3dimage_42108/</p>L020_3__M1_dN_45s0009_full.rec,  Reconstruction (Pixel Size 2.4 nm), 445.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        L020_3__M1_dN_45s0009.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-04-29-9/rawdata/L020_3__M1_dN_45s0009.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.6084/m9.figshare.29988805
title: Crows in Belgrade

description: The folder contains data and R code for a research article "Human population and park features affect escape behaviour in hooded crows across urban landscape".
DOI: 10.6084/m9.figshare.29988805.v1
title: Crows in Belgrade

description: The folder contains data and R code for a research article "Human population and park features affect escape behaviour in hooded crows across urban landscape".
DOI: 10.22002/zy18t-v2g41
title: wild type

description: Raw data files of wild type
description: <strong>Tilt Series Date:</strong> 2014-12-20</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -15.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Arash Komeili</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-20-51/rawdata/</p>wt_atlas40019.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-20-51/rawdata/wt_atlas40019.mrc"
        > <i class="download icon"></i> Download </a></p>

        wt_atlas40019_full.rec,  Reconstruction (Pixel Size 2.4 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-20-51/3dimage_49857/wt_atlas40019_full.rec"
        > <i class="download icon"></i> Download </a></p>