cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11390277.v1
title: SurgeryAnalysisPublic.sav

description: Dataset for: No evidence that that childhood genital surgery influences gender congruence in adults with atypical sex characteristics: Results of a combined quantitative analysis of 282 cases in 58 academic articles
DOI: 10.6084/m9.figshare.22640869.v1
title: Table S1. Taxonomy table indicating the taxonomic assignment of each ASV

description: Table containing all ASVs IDs and its taxonomic classification for buffelgrass microbiome study.
DOI: 10.6084/m9.figshare.28593299.v2
title: Temperatura control y handicaped ASY

description: Control y handicaped
DOI: 10.6084/m9.figshare.28696292.v1
title: ICML 2025 Submission 9082

description: Rebuttal Figures and Tables for ICML 2025 Submission 9082
DOI: 10.6084/m9.figshare.3553395.v1
title: Appendix A. From telemetry data to multi-state capture-recapture (MS-CR) histories.

description: From telemetry data to multi-state capture-recapture (MS-CR) histories.
DOI: 10.6084/m9.figshare.24572683.v2
title: ReptTraits: a comprehensive dataset of ecological traits in reptiles

description: Trait datasets are increasingly being used in studies investigating the eco-evolutionary theory and global conservation initiatives. Reptiles are emerging as a key group for studying these questions, with new data accumulation accelerating. We collected data, from earlier databases and the primary literature, to create the most up-to-date dataset on reptilian traits with 40 traits from 12060 species of reptile (Amphisbaenia, Crocodylia, Rhynchocephalia, Sauria, Serpentes and Testudines). Data were collected from 1288 data sources published between 1820–2023. The data encompass various morphological, physiological, behavioural, and performance traits along with availability of genetic data, IUCN red list assessments, and population trends. Our intention is to make this resource freely accessible, ensuring its current status and encouraging the inclusion of additional relevant traits in the future. Gaps in trait data might impede our ability to conduct large-scale analyses but we aim to catalyse a collaborative effort within the scientific community to address these data gaps.
DOI: 10.6084/m9.figshare.5756514.v1
title: American Geophysical Union Annual Meeting Tweets 2017

description: Archive of ~32k tweets posted between November 4, 2017 and January 4, 2017 with the hashtag #AGU17. Retrieved using TAGS v6.1.7 (http://tags.hawksey.info)
DOI: 10.6084/m9.figshare.1513839.v1
title: Retinotopic mapping tutorial

description: My old retinotopic mapping tutorial and the associated Matlab functions for data analysis.
DOI: 10.6084/m9.figshare.22002014.v1
title: Raw Data NatCat.zip

description: Raw Data for NatCat
DOI: 10.6084/m9.figshare.28786040.v1
title: 原始data.xls

description: Metagenomics Capture targeted next-generation sequencing
DOI: 10.6084/m9.figshare.25331611.v1
title: SIBO data

description: A study on the correlation between small intestinal bacteria overgrowth,blood lipid levels, and premature birth.
DOI: 10.6084/m9.figshare.5135869.v1
title: NGS-based analysis of base-substitution signatures created by yeast DNA polymerase eta and zeta on undamaged and abasic DNA templates in vitro

description: This fileset contains NGS data used in the paper titled above. Data from two NGS runs (16K and 17A) are lincluded. Please see Figshare16K.xlsx and Figshare17A.xlsx for text explanation and barcode information.<br><br><br><br><br>
DOI: 10.6084/m9.figshare.26578184.v1
title: Additional file 2 of Whole-genome sequencing analysis of two heat-evolved Escherichia coli strains

description: Additional file 2.
DOI: 10.6084/m9.figshare.24797745.v1
title: Data from: Shoreline armoring potentially diminishes the ecological roles of parrotfishes in urban coral reefs

description: These file consist of data on benthic covers based on point intersect transect (PIT) surveys, parrotfish grazing intensity and the quantity of cyanobacteria and inorganic sediment in EAM at Pulau Hantu and Kusu Island in Singapore.
DOI: 10.6084/m9.figshare.7177547.v1
title: Supplementary Material for: Thermal Response of Epigenetic Genes Informs Turtle Sex Determination with and without Sex Chromosomes

description: Vertebrate sexual fate can be established by environmental cues (e.g., temperature-dependent sex determination, TSD) or by genetic content (genotypic sex determination, GSD). While methylation is implicated in TSD, the influence of broader epigenetic processes in sexual development remains obscure. Here, we investigated for the first time the embryonic gonadal expression of the genome-wide epigenetic machinery in turtles, including genes and noncoding RNAs (ncRNAs) involved in DNA/histone acetylation, methylation, ubiquitination, phosphorylation, and RNAi. This machinery was active and differentially thermosensitive in TSD versus GSD (ZZ/ZW) turtles. Methylation and histone acetylation genes responded the strongest. The results suggest these working hypotheses: (i) TSD might be mediated by epigenetically controlled hormonal pathways (via acetylation, methylation, and ncRNAs), or by (ii) hormonally controlled epigenetic processes, and (iii) key epigenetic events prior to the canonical thermosensitive period may explain differences between TSD and GSD. Novel epigenetic candidate regulators other than methylation were identified, including previously unknown ncRNAs that could potentially mediate gonadogenesis. These findings illuminate the molecular ecology of reptilian sex determination and permitted hypothesis building to help guide future functional studies on the epigenetic transduction of external cues in TSD versus GSD systems.
DOI: 10.6084/m9.figshare.7789538.v1
title: Benthic_codefile_Depth moderates loss of marine benthic communities.csv

description: Benthic code for image classification and classified data of marine benthic communities in Western Australia. Used for manuscript: Depth moderates loss of marine benthic communities associated with a marine heatwave
DOI: 10.6084/m9.figshare.25201076.v3
title: JOV DATASET_2.xlsx

description: This is the dataset from the article being submitted to the Journal Of Vegetation Science, entitled: "Dynamics of Functional, Phylogenetic, and Taxonomic Diversity in Tree Communities Across a Flood Gradient with Distinct Fire Histories: Unveiling Patterns in a Wetlands Ecosystem"This study investigates the interactions between richness, functional, phylogenetic, and taxonomic diversity of tree communities across a flood gradient in the Pantanal, a wetlands ecosystem, especially following the catastrophic 2020 fire. We uncover complex patterns of response of tree communities to flooding gradients and fire histories, highlighting the importance of these factors in shaping the composition and structure of communities in wetland environments.
DOI: 10.6084/m9.figshare.16716106.v1
title: Behavioral Responses

description: Online Behavioral Data<br>In this experiment, 60 participants viewed images and pressed keys to indicate their current perception of the image. The images were shown in 3 different sizes and 4 different locations. Each of these was shown for 2x60 second trials Each participant saw one of three images: Rubin face-vase Necker cube with the view from above consistent with the green face being closest Necker cube with the view from above consistent with the blue face being closest<br><br>This .mat file contains the raw responses to each of the images. All times are given in ms from the start of the trial.Responses can be for one of the 2 percepts, or for UNSURE. NaN indicates pressing a button unrelated to the percepts.For Rubin face vase, the percepts are face or vase.For Necker cube, the percepts are green or blue, which is the colour of the face perceived as closest.<br>The trial condition is found in the field Subjects.data.size.trial.image and Subjects.data.location.trial.image <br>size conditions for Necker Cube = Small (4deg), Centre (8deg) , Big (12deg)size conditions for FaceVase = Centre (8deg) , Big (12deg) , XLarge (16deg)<br><br>location conditions = Left, Right, Bottom, Top
DOI: 10.6084/m9.figshare.23936259.v2
title: Transcriptome and translatome comparison of tissues from Arabidopsis thaliana

description: Translation is one of the multiple complementary steps that orchestrates gene activity. In contrast to the straightforwardness of transcriptional surveys, genome-wide profiles of the translational landscape of plant cells remain technically challenging and are less well explored. Protein-coding genes are expressed at a variable degree of efficiency, resulting in pronounced discordance among the regulatory levels that govern gene activity. Ribo-Seq is an extremely useful tool for estimating translation efficiency, but limited data sets are available for plants. Here, we compare inventories of expressed and translated RNA populations, generated by mRNA sequencing (RNA-Seq) and ribosome footprinting (Ribo-Seq) of shoots and roots of <i>Arabidopsis thaliana</i> seedlings. Our data set provides information on the translational fitness of protein-coding mRNAs and lncRNAs that may aid in obtaining a comprehensive picture of the regulatory levels governing genes activity across the genome.<br>
DOI: 10.6084/m9.figshare.3187531.v1
title: Gas Prices Dataset

description: This is a version of the gas prices dataset used in the following paper:<br><i>Data Polygamy: The Many-Many Relationships among Urban Spatio-Temporal Data Sets, F. Chirigati, H. Doraiswamy, T. Damoulas, and J. Freire. In Proceedings of the 2016 ACM SIGMOD International Conference on Management of Data (SIGMOD), 2016</i><br>The dataset includes records of the average gasoline price in dollars per gallon for New York, from 2000 to 2014. The original data is available at the U.S. Energy Information Administration website: https://www.eia.gov/petroleum/gasdiesel/xls/pswrgvwall.xls
DOI: 10.6084/m9.figshare.13311929.v1
title: Rawdata from RCT -english version.xlsx

description: This is the raw data in Excel form from the RCT part of the study where we describe de-identified patient characteristics and hospital events events, oropharyngeal culture results throughout hospitalisation.
DOI: 10.6084/m9.figshare.5005256.v1
title: Microsatellite alleles and collecting information

description: The dataset contains allele calls for all individuals used in the analyses, and associated collecting information<br>Microsatellite loci names are Ctest7, Ctest9, Ctest10, Ctest11, Ctest12, Ctest16, Ctest18, Ctest31, Ctest 32, Ctest36, Ctest47<br>Microsatellite allele calls are diploid. Each allele is denoted by three digits, and both alleles are in the same cell, without separator. The numbers represent the DNA fragment length
DOI: 10.6084/m9.figshare.16415802.v2
title: Data and Model Checkpoints for "Weakly Supervised Concept Map Generation through Task-Guided Graph Translation"

description: Data and model checkpoints for paper "Weakly Supervised Concept Map Generation through Task-Guided Graph Translation" by Jiaying Lu, Xiangjue Dong, and Carl Yang. The paper has been accepted by IEEE Transactions on Knowledge and Data Engineering (TKDE). <br> `GT-D2G-*.tar.gz` are model checkpoints for GT-D2G variants. These models are trained by `seed=27`. `nyt/dblp/yelp.*.win5.pickle.gz` are initial graphs generated by NLP pipelines. `glove.840B.restaurant.400d.vec.gz` is the pre-trained embedding for the Yelp dataset. <br> For more instructions, please refer to our GitHub repo.
DOI: 10.6084/m9.figshare.17109350.v1
title: count-data-lung-annotated.rds

description: tissue-specific single-cell read count data showing the changes with parabiosis
DOI: 10.6084/m9.figshare.24877758.v1
title: Mitochondrial Proteomics for RV Extracts (TMT10Plex) Using Proteome Discoverer Software

description: TMT10plex analysis of mitochondrial enrichments from control, MCT-AAV-GFP, and MCT-AAV-JPH2
DOI: 10.6084/m9.figshare.16862599.v1
title: Seasonal variation and potential roles of dark septate fungi in an arid grassland

description: High temperatures and extended drought in temperate and tropical arid ecosystems promote the colonization of diverse microenvironments by dark septate fungi (DSF). These fungi contribute to soil nutrient cycling, soil stabilization, and plant survival, but the roles of individual DSF species, their distributions, and their community diversity are poorly understood. The objective of this study was to evaluate the distribution, seasonal variation, and potential roles of DSF on plant growth. We collected biocrust (lichen-, moss-, and cyanobacterium-dominated biocrusts) soils at different depths and rhizosphere soils from two grasses, <i>Bromus tectorum</i> and <i>Pleuraphis jamesii</i>, in an arid grassland near Moab, Utah, USA. Seasonal variation of DSF was evaluated using culture-based approaches and compared with fungal community profiles from next-generation sequencing (NGS). Culturing showed that DSF were 30% more abundant in biocrusts compared with the focal rhizospheres. The abundance of DSF varied seasonally in belowground samples (rhizosphere and below-biocrust), with a significant increase during the summer months. Pleosporales was the dominant order (35%) in both biocrust and rhizosphere soils out of 817 isolated fungi. Dominant DSF genera in culture included <i>Alternaria, Preussia, Cladosporium, Phoma</i>, and an unknown Pleosporales. Similar results were observed in biocrust and rhizosphere soils NGS. Further, seed germination experiments using dominant taxa were conducted to determine their potential roles on germination and seedling growth using maize as a model plant. <i>Cladosporium</i> and unknown Pleosporales isolates showed plant growth–promoting ability. The variation in abundance of DSF, their differential occurrence in different microenvironments, and their ability to grow in a xerotolerant medium reflect adaptations to summer environmental conditions and to changes in the abundance of organic matter, as well as a potential increase in plant investment in these fungi when heat and drought stresses are more severe.
DOI: 10.6084/m9.figshare.27193236.v2
title: <b>Building Trust through ESG</b>

description: The research explores how Environmental, Social, and Governance (ESG) practices influence consumer behavior in the fashion industry. It examines the role of corporate image and word-of-mouth (WOM) in mediating the relationship between ESG practices and consumer trust, which in turn affects purchase decisions. Through a survey of Generation Z consumers, the study highlights how positive ESG practices improve brand image, increase trust, and encourage sustainable fashion consumption. The findings emphasize the importance of ethical behavior and sustainability in shaping consumer loyalty and competitive advantage for fashion companies.
DOI: 10.6084/m9.figshare.28843931.v1
title: Inter-Site Correlation of Ambient Air Pollutants Across Swiss Plateau NABEL Stations (2015–2019)

description: This dataset presents inter-site Spearman correlation matrices for six ambient air pollutants—PM10, PM2.5, elemental carbon (EC), sulfur dioxide (SO2), nitrogen dioxide (NO2), and carbon monoxide (CO)—as recorded by the Swiss NABEL monitoring network between 2015 and 2019.<br>The analysis is limited to NABEL stations located within the Swiss Plateau. Monitoring sites situated at high altitudes or south of the Alps were excluded for two primary reasons:(1) none of the patients in the associated clinical dataset reside in those regions, and(2) these areas represent distinct meteorological and pollution zones that are not representative of typical outpatient exposure in the Swiss Plateau.<br>The resulting Spearman correlation matrices reveal strong coherence in pollutant levels across all included sites. Within this context, the Zurich–Kaserne monitoring site stands out as both the most representative and comprehensive dataset available. It is geographically close to the clinical setting in Pfäffikon SZ—approximately 27 kilometers in straight-line distance—with the patient population largely confined to a radius of 60 kilometers, and the majority residing within 25 kilometers of the practice.<br>Zurich–Kaserne provides long-term, near-continuous monitoring for all six pollutants. While PM2.5 shows a moderate gap in data coverage (missing 186 out of 1,645 possible daily values), a robust imputation strategy was employed to reconstruct missing PM2.5 data. Specifically, missing values were predicted using a gradient-boosted regression tree model (XGBoost) trained on other pollutants (PM10, NO2, SO2, CO) measured concurrently at the same site. Predicted values were constrained to remain below or equal to PM10 to ensure physical plausibility. The remaining five pollutants (PM10, EC, NO2, SO2, CO) exhibited minimal missingness and required only occasional linear interpolation, which is flagged in the data.<br>In addition to the Excel file, a map of the included NABEL measuring sites is provided. This visual reference shows the geographic distribution and names of all stations considered in the analysis. It helps illustrate the spatial coherence of pollutant trends across the Swiss Plateau and highlights the central location of the Zurich–Kaserne site relative to the clinical population.<br>These findings justify the use of Zurich–Kaserne as the primary reference station for environmental exposure modeling in toxicokinetic analyses, particularly in studies correlating air pollutant exposure with urinary metal excretion in outpatient settings.<br>
DOI: 10.6084/m9.figshare.7751825.v1
title: RNA-Seq data files

description: RNA expression matrices - FPKM from STAR, cufflinks and TPM from STAR, RSEM, Toil
DOI: 10.6084/m9.figshare.19367111.v1
title: olink ChipRun_IIM raw data

description: To investigate the immune response related protein profiling in plasma of patients with idiopathic inflammatory myopathies (IIM). In addition, to establish the immune-response related proteins of IIM patients with myositis-specific antibodies (MSAs). In order to demonstrate the potential biomarkers for interstitial lung disease (ILD) of IIM patients, the plasma protein profiling was evaluated.36 IIM patients and 25 healthy controls were enrolled in our study. 92 plasma immune response related proteins were detected by Olink proteomics. Plasma protein profiling of IIM patients with different MSAs and patients with/without ILD were analyzed as well.
DOI: 10.6084/m9.figshare.6034067.v1
title: Supplementary Material for: Whole-Genome Linkage Analysis with Whole-Exome Sequencing Identifies a Novel Frameshift Variant in <b><i>NEFH</i></b> in a Chinese Family with Charcot-Marie-Tooth 2: A Novel Variant in <b><i>NEFH</i></b> for Charcot-Marie-Tooth 2

description: <b><i>Background:</i></b> Charcot-Marie-Tooth disease (CMT) is the most common neurodegenerative disorder of the peripheral nervous system. More than 50 genes/loci were found associated with the disease. We found a family with autosomal-dominant CMT2. <b><i>Objective:</i></b> To reveal the pathogenic gene of the family and further investigate the function of the variant. <b><i>Methods:</i></b> DNA underwent whole-genome linkage analysis for all family members and whole-exome sequencing for 2 affected members. Neurofilament light polypeptide and wild-type or mutant neurofilament heavy polypeptide (NEFH) were co-transfected into SW13 (vim–) cells. The <i>nefh</i>-knockdown zebrafish model was produced by using morpholino antisense oligonucleotides. <b><i>Results:</i></b> We identified a novel insertion variant (c.3057insG) in <i>NEFH</i> in the family. The variant led to the loss of a stop codon and an extended 41 amino acids in the protein. Immunofluorescence results revealed that mutant <i>NEFH</i> disrupted the neurofilament network and induced aggregation of NEFH protein. Knockdown of<i> nefh</i> in zebrafish caused a slightly or severely curled tail. The motor ability of <i>nefh</i>-knockdown embryos was impaired or even absent, and the embryos showed developmental defects of axons in motor neurons. The abnormal phenotype and axonal developmental defects could be rescued by injection of human wild-type but not human mutant<i> NEFH</i> mRNA. <b><i>Conclusions:</i></b> We identified a novel stop loss variant in <i>NEFH</i> that is likely pathogenic for CMT2, and the results provide further evidence for the role of an aberrant assembly of neurofilament in CMT.
DOI: 10.6084/m9.figshare.10283225.v4
title: freshwater chemical properties for New Moscow region

description: Please, cited as Pukalchik et al. (2019) https://doi.org/10.6084/m9.figshare.10283225<br>A total of 1600 water samples were collected during 2017-2018 from wells (1215 sites), rivers (225 sites) and springs (160 sites) in the region. Water samples were collected from the well, river, or spring by using a 2-L stainless-steel container. The samples were bottled and then immediately transported to the laboratory for chemical analysis, eliminating the need for conservation methods. For each water sample, 25 parameters were measured. The pH was measured by using a HANNA pH-meter 213. Anions (NO<sub>3</sub>, NO<sub>2</sub>, PO<sub>4</sub>, SO<sub>4</sub> and Cl) were measured by ion chromatography using a Dionex 1100 instrument. NH<sub>4</sub> content was obtained on an HACH DR2800 using colorimetric determination with Nessler’s reagent. Cation (K, Cr, Ni, Ca, Zn, Fe, Mn, Na, Cu, Mg) contents were obtained by inductively coupled plasma atomic emission spectroscopy on an ICP-OES Agilent 5110 spectroscope. Mineralization was measured by gravimetric analysis consisting of evaporation at 105°C in a drying chamber. Alkalinity was obtained by titration with 0.05N HCl. Hardness was measured by titration with Trilon B and eriochrome black.
DOI: 10.25403/upresearchdata.22059389.v1
title: The development of a measurement instrument to measure the audit quality climate in audit firms

description: This dataset was used in the study "An audit quality climate in audit firms". The dataset was responses from non-executive employees at large audit firms and the Auditor-General of South Africa. The Qualtrix XM platform was used as the data collection software and the data was exported to, and analysed, using Statistical Package for the Social Sciences (SPSS) version 27 and Analysis of Moment Structures (AMOS) version27. A quantitative research methodology was used to analyze the data. The dataset includes the results from the exploratory factor analyses and confirmatory factor analyses that were done to determine six audit quality climate dimensions. These six dimensions are contained in a measurement instrument called the "Audit Firm Quality Climate Measurement Instrument". The dataset further include the descriptive statistics and basic dimensions of the identified audit quality climate dimensions. Furthermore, Madia's assessment of normality and Harman's single factor test is included.
DOI: 10.6084/m9.figshare.12479306.v1
title: India's elevation profile in a GeoTIFF file

description: India's elevation data as a single TIFF file. See https://github.com/dilawar/map-india-center for more details.<br>
DOI: 10.6084/m9.figshare.12287816.v1
title: Data and code for the data analyses used in Maciá-Vicente, Piepenbring, Koukol (2020) IMA Fungus 11:16, doi: 10.1186/s43008-020-00036-w

description: Data and code for Maciá-Vicente, Piepenbring, Koukol (2020) IMA Fungus 11:16, doi: <b></b>10.1186/s43008-020-00036-w