cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/119027
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1416 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119028
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1417 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119029
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1418 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119030
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1419 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119031
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1420 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119032
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1421 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750229
title: MOESM2 of The complete genome and methylome of Helicobacter pylori hpNEAfrica strain HP14039

description: Additional file 2: Table S1. Strains used in this study to construct core genome phylogenetic tree.
DOI: 10.7284/119033
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1422 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750226
title: MOESM1 of The complete genome and methylome of Helicobacter pylori hpNEAfrica strain HP14039

description: Additional file 1. The original genbank file that shows annotation features of HP14039.
DOI: 10.6084/m9.figshare.7750229.v1
title: MOESM2 of The complete genome and methylome of Helicobacter pylori hpNEAfrica strain HP14039

description: Additional file 2: Table S1. Strains used in this study to construct core genome phylogenetic tree.
DOI: 10.6084/m9.figshare.7750226.v1
title: MOESM1 of The complete genome and methylome of Helicobacter pylori hpNEAfrica strain HP14039

description: Additional file 1. The original genbank file that shows annotation features of HP14039.
DOI: 10.6084/m9.figshare.7750214
title: A comparative map of macroautophagy and mitophagy in the vertebrate eye

description: Photoreception is pivotal to our experience and perception of the natural world; hence the eye is of prime importance for most vertebrate animals to sense light. Central to visual health is mitochondrial homeostasis, and the selective autophagic turnover of mitochondria (mitophagy) is predicted to play a key role here. Despite studies that link aberrant mitophagy to ocular dysfunction, little is known about the prevalence of basal mitophagy, or its relationship to general autophagy, in the visual system. In this study, we utilize the <i>mito</i>-QC mouse and a closely related general macroautophagy reporter model to profile basal mitophagy and macroautophagy in the adult and developing eye. We report that ocular macroautophagy is widespread, but surprisingly mitophagy does not always follow the same pattern of occurrence. We observe low levels of mitophagy in the lens and ciliary body, in stark contrast to the high levels of general MAP1LC3-dependent macroautophagy in these regions. We uncover a striking reversal of this process in the adult retina, where mitophagy accounts for a larger degree of the macroautophagy taking place, specifically in the photoreceptor neurons of the outer nuclear layer. We also show the developmental regulation of autophagy in a variety of ocular tissues. In particular, mitophagy in the adult mouse retina is reversed in localization during the latter stages of development. Our work thus defines the landscape of mitochondrial homeostasis in the mammalian eye, and in doing so highlights the selective nature of autophagy <i>in vivo</i> and the specificity of the reporters used. <b>Abbreviations:</b> ATG: autophagy related; GFP: green fluorescent protein; LC3: microtubule associated protein 1 light chain 3; ONH: optic nerve head; ONL: outer nuclear layer; RPE: retinal pigment epithelium.
DOI: 10.7284/119034
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1423 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750214.v1
title: A comparative map of macroautophagy and mitophagy in the vertebrate eye

description: Photoreception is pivotal to our experience and perception of the natural world; hence the eye is of prime importance for most vertebrate animals to sense light. Central to visual health is mitochondrial homeostasis, and the selective autophagic turnover of mitochondria (mitophagy) is predicted to play a key role here. Despite studies that link aberrant mitophagy to ocular dysfunction, little is known about the prevalence of basal mitophagy, or its relationship to general autophagy, in the visual system. In this study, we utilize the <i>mito</i>-QC mouse and a closely related general macroautophagy reporter model to profile basal mitophagy and macroautophagy in the adult and developing eye. We report that ocular macroautophagy is widespread, but surprisingly mitophagy does not always follow the same pattern of occurrence. We observe low levels of mitophagy in the lens and ciliary body, in stark contrast to the high levels of general MAP1LC3-dependent macroautophagy in these regions. We uncover a striking reversal of this process in the adult retina, where mitophagy accounts for a larger degree of the macroautophagy taking place, specifically in the photoreceptor neurons of the outer nuclear layer. We also show the developmental regulation of autophagy in a variety of ocular tissues. In particular, mitophagy in the adult mouse retina is reversed in localization during the latter stages of development. Our work thus defines the landscape of mitochondrial homeostasis in the mammalian eye, and in doing so highlights the selective nature of autophagy <i>in vivo</i> and the specificity of the reporters used. <b>Abbreviations:</b> ATG: autophagy related; GFP: green fluorescent protein; LC3: microtubule associated protein 1 light chain 3; ONH: optic nerve head; ONL: outer nuclear layer; RPE: retinal pigment epithelium.
DOI: 10.7284/119035
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1424 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7749731
title: Prevalence Human Values in SE Publications

description: This data is the classification result used in the publication titled "A Study on the Prevalence of Human Values in Software Engineering Publications, 2015 – 2018"
DOI: 10.6084/m9.figshare.7749713
title: TreeBASEdmp-2019-02-21

description: TreeBASE (http://www.treebase.org) schema and data ingestible by PostgreSQL
DOI: 10.7284/119036
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1425 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7749713.v1
title: TreeBASEdmp-2019-02-21

description: TreeBASE (http://www.treebase.org) schema and data ingestible by PostgreSQL
DOI: 10.7284/119037
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1426 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119038
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1427 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7749605
title: CCDB_1032.jpg

description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
DOI: 10.6084/m9.figshare.7749596
title: CCDB_1031..jpg

description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
DOI: 10.6084/m9.figshare.7749605.v1
title: CCDB_1032.jpg

description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
DOI: 10.7284/119039
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1428 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7749590
title: CCDB_1030.jpg

description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
DOI: 10.6084/m9.figshare.7749596.v1
title: CCDB_1031..jpg

description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
DOI: 10.6084/m9.figshare.7749548
title: Earth Analytics Applications | Data for Rim Fire California 2013

description: This directory contains vector and raster data for the 2013 Rim Fire in California. All raster data have been cropped using the fire perimeter vector boundary provided by Monitoring Trends in Burn Severity (MTBS), which is also in this dataset (mtbs_rim_fire_bounds.shp). <br>The data are products gathered from various sources including MTBS, Geospatial Multi-Agency Coordination (GeoMAC), MODIS Active Fire, MODIS Burned Area, and Incident Status Summary (ICS 209) reports.
DOI: 10.7284/119040
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1501 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7749590.v1
title: CCDB_1030.jpg

description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
DOI: 10.6084/m9.figshare.7749521
title: SupplTbl.1patryrafatmetabolomics and Rawdata

description: This is a supplementary table file for a metabolomic analysis on conditionally immortalized glomerular endothelial cells<br>
DOI: 10.7284/119041
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1502 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7749497
title: Circulating Angiotensin peptides levels in Acute Respiratory Distress Syndrome correlate with clinical outcomes: A pilot study

description: Thirty-nine ARDS patients were consented and enrolled within 24 hours of ARDS diagnosis. Plasma RAS peptide levels were quantified at study entry and 24, 48 and 72 hours using a liquid chromatography-mass spectrometry based metabolomics assay. RAS peptide concentrations were compared between survivors and non-survivors, and were correlated with clinical and pulmonary measures.
DOI: 10.6084/m9.figshare.7749497.v1
title: Circulating Angiotensin peptides levels in Acute Respiratory Distress Syndrome correlate with clinical outcomes: A pilot study

description: Thirty-nine ARDS patients were consented and enrolled within 24 hours of ARDS diagnosis. Plasma RAS peptide levels were quantified at study entry and 24, 48 and 72 hours using a liquid chromatography-mass spectrometry based metabolomics assay. RAS peptide concentrations were compared between survivors and non-survivors, and were correlated with clinical and pulmonary measures.
DOI: 10.6084/m9.figshare.7749464
title: CCDB_1028.jpg

description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
DOI: 10.6084/m9.figshare.7749476
title: CCDB_1029.jpg

description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
DOI: 10.7284/119042
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1503 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7749431
title: Actigraph Data for Study Participants

description: This data set contains the raw data from the accelerometers worn by the study participants.
DOI: 10.6084/m9.figshare.7749464.v1
title: CCDB_1028.jpg

description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
DOI: 10.6084/m9.figshare.7749476.v1
title: CCDB_1029.jpg

description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
DOI: 10.7284/119043
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1504 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7749395
title: Raw data for Figure 2

description: Raw data for Figure 2
DOI: 10.6084/m9.figshare.7749395.v1
title: Raw data for Figure 2

description: Raw data for Figure 2
DOI: 10.7284/119044
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1505 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119045
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1506 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7749332
title: On the role of soil water retention characteristic on aerobic microbial respiration

description: This data package accompanies manuscript entitled "<b>On the role of soil water retention characteristic on aerobic microbial respiration</b>" by Teamrat A. Ghezzehei, Benjamin Sulman, Chelsea L. Arnol, Nathaniel A. Bogie and Asmeret Asefaw Berhe, published in Biogeosciences (2019)<br>For additional information contact Soil Physics Lab at UC Merced (https://soilphysics.ucmerced.edu) taghezzehei@ucmerced.edu<br><b>Contents</b>:There are two self-contained R files that fit the proposed respiration model to experimental data. The codes are well anottated and self-explanatory. They read raw and proceesed data from accompanying folders and produce tabulated outputs and figures. A figures folder contains all the figures that are included in the paper and generated by these codes. <br>Both R codes will load the required packages at the start of execution.<br>Data used for model testing were obtained by one the following:1. Digitizing published figures2. Supplemental materials published by other researchers.<br><b>Data sources for this study are</b>:1. Moyano, F. E., Vasilyeva, N., Bouckaert, L., Cook, F., Craine, J., Yuste, J.C., Don, A., Epron, D., Formanek, P., Franzluebbers, A., Ilstedt, U., Kätterer, T., Orchard, V., Reichstein, M., Rey, A., Ruamps, L., Subke, J. A., Thomsen, I. K. and Chenu, C.: The moisture response of soil heterotrophic respiration: interaction with soil properties, Biogeosciences, 9(3), 1173–1182, doi:10.5194/bg-9-1173-2012, 2012.2.Arnold, C., Ghezzehei, T. A. and Berhe, A. A.: Decomposition of distinct organic matter pools is regulated by moisture status in structured wetland soils, Soil Biol Biochem, doi:10.1016/j.soilbio.2014.10.029, 2015.3. Miller, A. E., Schimel, J. P., Meixner, T., Sickman, J. O. and Melack, J. M.: Episodic rewetting enhances carbon and nitrogen release from chaparral soils, Soil Biol Biochem Soil Biol Biochem, 37(12), 2195–2204, doi:10.1016/j.soilbio.2005.03.021, 2005.<br>
DOI: 10.7284/119046
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1507 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7749323
title: Series 9

description: Not yet
DOI: 10.6084/m9.figshare.7749284
title: Daily coverage of CIMR (Arctic, Antarctic, and Global views)

description: <b>Caption:</b> Daily coverage of the Copernicus Imaging Microwave Radiometer (CIMR) mission. The colormap shows the number of revisits during a 24 hours period. Arctic, Antarctic, and Global views are presented.<br><b>Context:</b>The CIMR mission is specifically designed to ensure sub-daily coverage everywhere in the Arctic region, so as to support the <b>Integrated EU Arctic Policy</b>. Particularly, CIMR will achieve full sub-daily coverage of the Arctic Ocean and adjacent seas (including "no hole at the pole").<br>By symmetry, the excellent coverage will also be available over the Antarctic region.<br>More than 95% of the globe will be covered on a daily basis.
DOI: 10.6084/m9.figshare.7749320
title: Integrating alpha, beta, taxonomic and phylogenetic diversity on anuran fauna in different environmental gradients of tropical forests in western Ecuador - Supplementary material

description: The scripts are presented with the R-code of statistical, ecological and phylogenetic analysis. It also includes the input files to run and replicate the analysis.
DOI: 10.7284/119047
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1508 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7749323.v1
title: Series 9

description: Not yet
DOI: 10.7284/119048
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1509 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7746806
title: Multi image tiling of the trophosome area of Paracatenula sp. santandrea

description: Five specimen of Paracatenula sp. santandrea were fixed with PHEM buffered glutaraldehyde as described by Montanaro et al. (doi: 10.7717/peerj.1860 ) and processed with a high pressure freezer. Samples freeze-substituted in acetone with 1% w/v osmium tetroxide as described by McDonald and Webb (doi:10.1111/j.1365-2818.2011.03526.x ). All samples were embedded in Low Viscosity Resin using centrifugation embedding as described by McDonald (doi: 10.1017/S1431927613013846 ) and ultrathing sections were cut, mounted on slot grids, contrasted with lead citrate and uranyl acetate and then imaged with a Quanta FEG 250 scanning electron microscope equipped with a STEM detector. Images were recorded with a 10-20% overlap to allow reassembly with imaging software afterwards. Each image stack represents one sample.
DOI: 10.6084/m9.figshare.7749281.v1
title: BugDB.zip

description: A bug prediction dataset contains code and community smells
DOI: 10.7284/119049
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1510 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7746806.v1
title: Multi image tiling of the trophosome area of Paracatenula sp. santandrea

description: Five specimen of Paracatenula sp. santandrea were fixed with PHEM buffered glutaraldehyde as described by Montanaro et al. (doi: 10.7717/peerj.1860 ) and processed with a high pressure freezer. Samples freeze-substituted in acetone with 1% w/v osmium tetroxide as described by McDonald and Webb (doi:10.1111/j.1365-2818.2011.03526.x ). All samples were embedded in Low Viscosity Resin using centrifugation embedding as described by McDonald (doi: 10.1017/S1431927613013846 ) and ultrathing sections were cut, mounted on slot grids, contrasted with lead citrate and uranyl acetate and then imaged with a Quanta FEG 250 scanning electron microscope equipped with a STEM detector. Images were recorded with a 10-20% overlap to allow reassembly with imaging software afterwards. Each image stack represents one sample.
DOI: 10.7284/119050
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1511 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119051
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1512 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.25380/iastate.7746635
title: Distributed shear apparatus experiments using semi-brittle analog Carbopol Ultrez 21

description: Journal of Geophysical Research - Solid EarthTitle: The impact of rheology on the transition from stick-slip to creep in a semi-brittle analog (Published)Authors: Thomas Birren and Jacqueline E. ReberAffiliation: Department of Geological and Atmospheric Sciences, Iowa State University, Ames, IA 50011<br>This data set contains distributed shear apparatus experiments using semi-brittle analog, Carbopol Ultrez 21 at concentrations of 1, 2, and 3 wt.%. Measurements of pulling force and displacement show the slip behavior of the material ranges from stick-slip to creep for concentrations from high to low. Additionally, we provide particle image velocimetry outputs from PIVlab (a Matlab application) containing vectorized data of flow in our experiments. Original top-looking-down, time-lapse photographs are included where fracture morphology can be easily observed.
DOI: 10.6084/m9.figshare.7749281.v3
title: BugDB.zip

description: A bug prediction dataset contains code and community smells
DOI: 10.7284/119052
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1513 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7749281.v4
title: DB.zip

description: A bug prediction dataset contains code and community smells