cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15558520
title: LeafMachine2 Data: Casuarinaceae Leaf Outlines and ECT

description: Casuarinaceae - 50 leaves - 6.9 MB: This repository contains HDF5 (.h5) files with leaf morphological data for species in the Casuarinaceae family. Each file represents a single leaf specimen and contains leaf shape outlines, the 128x128 ECT matrix, and associated metadata.

File Contents

This dataset contains 50 leaves from taxa in the family Casuarinaceae. Some leaves may be partial, predated, broken, or incomplete. 

Each .h5 file contains the following datasets:



ECT_matrices/ - Euler Characteristic Transform (ECT) matrices capturing topological features of leaf shapes

shapes/shape_0 - Coordinate array (x,y) defining the leaf outline boundary. 

component_names - Original filename identifier (without extension)

group_labels - Taxonomic classification dictionary containing:



family: Taxonomic family name

genus: Genus classification

genus_species: Binomial species name

fullname: Complete taxonomic identifier




Data Format

Files are organized with standardized naming: [Herbarium]_[ID]_[Family]_[Genus]_[Species]__[LeafID].h5

Shape coordinates are normalized to a unit circle centered at the origin (-0.5 to 0.5 range), vertically oriented.

Uncompressed Size:

6.9 MB

Usage

Code for reading, processing, and analyzing these files is available at: https://github.com/Gene-Weaver/LM2-Data-Tools

The repository includes functions for extracting data and generating visualizations.

Citation: Please cite the LeafMachine2 paper and this dataset.



Weaver, W. N., & Smith, S. A. (2023). From leaves to labels: Building modular machine learning networks for rapid herbarium specimen analysis with LeafMachine2. Applications in Plant Sciences, 11(5), e11548. https://doi.org/10.1002/aps3.11548
DOI: 10.15468/dl.m6mvp4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathytroctes microlepis Günther, 1878",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((17.8454 -33.8607,17.8905 -34.1504,17.9648 -34.1504,17.9648 -25.1504,14.3389 -25.1504,14.4725 -26.5137,15.1589 -28.0715,16.3623 -29.3594,16.8947 -30.6715,17.7447 -31.9232,17.8096 -32.2341,17.5192 -32.4186,17.3515 -32.9009,17.8454 -33.8607))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010629-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.18299882
title: Replication material for paper "Rudolph et al.: Empathy Informs Host Community Attitudes toward Climate Migrants in Rural Bangladesh"
DOI: 10.5281/zenodo.18312920
title: Supporting data for the manuscript "A comparative study of non-destructive techniques for estimating dislocation densities in heteroepitaxial AlN layers"

description: Supporting data for the manuscript "A comparative study of non-destructive techniques for estimating dislocation densities in heteroepitaxial AlN layers"
DOI: 10.5281/zenodo.18312921
title: Supporting data for the manuscript "A comparative study of non-destructive techniques for estimating dislocation densities in heteroepitaxial AlN layers"

description: Supporting data for the manuscript "A comparative study of non-destructive techniques for estimating dislocation densities in heteroepitaxial AlN layers"
DOI: 10.7910/dvn/sr84po
title: Sophie Germain primes generated by the polynomial P(n) = 3n^2 + 3n + 23 (sequence)

description: This dataset is a sequence of Sophie Germain primes generated by the polynomial 
P(n) = 3n^2 + 3n + 23. I raise the question of whether there are infinitely many such primes.
DOI: 10.15468/dl.z8cy3s
title: Occurrence Download

description: A dataset containing 3275 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canarium australianum"
 ]
}

 The dataset includes 3275 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004775-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18338042
title: THE ROLE OF OUTDOOR EXTRACURRICULAR ACTIVITIES IN ADVANCING LANGUAGE LEARNING
DOI: 10.5281/zenodo.18338040
title: THE ROLE OF OUTDOOR EXTRACURRICULAR ACTIVITIES IN ADVANCING LANGUAGE LEARNING
DOI: 10.57745/rnqfav
title: DSM15722_bakta.zip

description: Genome annotation of Vreelandella sulfidaeris DSM15722 with Bakta version 1.11.0.
DOI: 10.57745/sjmflw
title: DSM15722_antismash.zip

description: Genome annotation of Vreelandella sulfidaeris DSM15722 with antiSMASH version 8.0.4.
DOI: 10.57745/ksgqms
title: Vreelandella_sulfidaeris_DSM15722

description: Genome annotation of Vreelandella sulfidaeris DSM15722 with Bakta version 1.11.0 and antiSMASH version 8.0.4.
DOI: 10.5281/zenodo.18337246
title: Data repository for "Ultrasensitive Magnetometer based on Cusp Points of the Photon-Magnon Synchronization Mode"

description: This data repository contains the datasets used to reproduce the figures in the paper entitled Ultrasensitive Magnetometer based on Cusp Points of the Photon-Magnon Synchronization Mode. The files are named according to their corresponding figure numbers.
DOI: 10.5281/zenodo.18337245
title: Data repository for "Ultrasensitive Magnetometer based on Cusp Points of the Photon-Magnon Synchronization Mode"

description: This data repository contains the datasets used to reproduce the figures in the paper entitled Ultrasensitive Magnetometer based on Cusp Points of the Photon-Magnon Synchronization Mode. The files are named according to their corresponding figure numbers.
DOI: 10.5281/zenodo.18219649
title: Online repository for surface roughnesses of Chang'E-5 and Chang'E-6 lunar samples
DOI: 10.5281/zenodo.18337696
title: Online repository for surface roughnesses of Chang'E-5 and Chang'E-6 lunar samples
DOI: 10.5281/zenodo.18338051
title: sản phẩm tiểu luận kĩ năng số khai thác tài nguyên giáo dục mở
DOI: 10.5281/zenodo.18338052
title: sản phẩm tiểu luận kĩ năng số khai thác tài nguyên giáo dục mở
DOI: 10.15468/dl.pqeemc
title: Occurrence Download

description: A dataset containing 2207193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Synedrellopsis grisebachii, Tilesia baccata, Tripsacum lanceolatum, Triraphis andropogonoides, Urochloa arrecta, Urochloa jubata, Urochloa mollis, Urochloa oligobrachiata, Urochloa paucispicata, Urochloa plantaginea, Urochloa platyphylla, Urochloa dura, Urochloa trichopus, Vachellia caven, Vellosiella spathacea, Veronica javanica, Zephyranthes chlorosolen, Vachellia aroma, Acaena argentea, Acmella glaberrima, Agrostis vinealis, Alisma lanceolatum, Alopecurus aequalis, Ambrosia arborescens, Ammannia latifolia, Antidesma bunius, Aphanes arvensis, Apium prostratum, Arctotis acaulis, Argyranthemum frutescens, Aristotelia chilensis, Arnica angustifolia, Atriplex rosea, Bidens laevis, Bidens pseudocosmos, Bothriochloa laguroides, Bothriochloa saccharoides, Bromus lanceolatus, Calendula tripterocarpa, Catabrosa aquatica, Cenchrus myosuroides, Centaurium littorale, Chenopodium carnosulum, Chenopodium vulvaria, Clematis bonariensis, Clematis campestris, Crepis pulchra, Crotalaria grahamiana, Croton setigerus, Cupressus goveniana, Cynoglossum creticum, Cynoglossum zeylanicum, Cynosurus cristatus, Cyperus articulatus, Cyperus laevigatus, Cyperus squarrosus, Daucus pusillus, Deschampsia setacea, Digitaria aequiglumis, Eleocharis montana, Eleocharis palustris, Epilobium obscurum, Eragrostis elongata, Eriochloa montevidensis, Euphorbia falcata, Euphorbia platyphyllos, Festuca filiformis, Festuca juncifolia, Freesia refracta, Galium divaricatum, Galium parisiense, Gentiana prostrata, Gynerium sagittatum, Hordeum secalinum, Hypericum inodorum, Elymus hystrix, Iberodes linifolia, Indigofera truxillensis, Knautia integrifolia, Lampranthus multiradiatus, Lathyrus cicera, Leontodon hirtus, Leontodon taraxacoides, Leucojum vernum, Linum catharticum, Logfia gallica, Lotus angustissimus, Lupinus albus, Lythrum album, Lythrum maritimum, Lythrum portula, Madia sativa, Malva nicaeensis, Medicago monspeliaca, Microchloa indica, Myosotis laxa, Myosotis ramosissima, Myosotis stricta)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2207193 records from 4703 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004647-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/96sb28ft9n.1
title: Leukemia Classification

description: Contains ALL infected and normal non cancerous cells
DOI: 10.6084/m9.figshare.27332124
title: Raw data and R code on participant data collection in study in the DRC characterizing the effects of monetary incentives on data collection.

description: Malaria is one of the deadliest vector borne diseases effecting sub-Saharan Africa. A suite of systems are being used to monitor and manage malaria risk and disease incidence, with an increasing focus on technological interventions that allow private citizens to remotely record and upload data. However, data collected by citizen scientists must be standardised and consistent if it is to be used for scientific analysis. Studies that aim to improve data collection quality and quantity have often included incentivisation, providing citizen scientists with monetary or other benefits for their participation in data collection. We tested whether monetary incentives enhance participation and data collection in a study trialling an acoustic mosquito sensor. Working with the community in two health districts in the Democratic Republic of Congo, we measured data collection participation, completeness, and community responses. Our results showed mixed responses to the incentive, with more participants interested in the social status and monetary value of the technology used than the monetary incentive itself. The effect of incentives on data collection varied over the course of the trial, increasing participation in the start of the trial but with no effect in the latter half of the trial. Feedback from participants showed that opinions on technology, research objectives, and incentives varied between communities, and was associated with differences in data collection quantity and quality, suggesting that differences in community interest in data collection and the incentives may be more important than the incentive value itself. These results suggest that though there is an initial benefit, extrinsic motivations do not override differences in intrinsic motivations over time, and enhanced communication and dialogue with participants may improve citizen science participation and attitudes.
DOI: 10.25919/8err-m038
title: Parkes observations for project P1365 semester 2025APRS_02

description: We propose a timing follow-up project for two newly discovered pulsars, J0915-6635 and J0917-6642, from the MWA-SMART survey. These pulsars were recently discovered from a blind periodic search of an 80-min SMART survey observation, with an localisation precision of 4 arcminutes. Initial flux density estimates suggest they are faint, requiring follow-up with the Parkes UWL receiver for precise timing solutions, flux density measurements, and polarimetric analysis. Initial analysis suggests a flux density 0.2-0.5 mJy for J0915-6635, and 0.1-0.3 mJy for J0917-6642 at 1.4 GHz, assuming a spectral index of -1.6. Observations with the Murriyang's UWL receiver will help enable a faster convergence to the full coherent timing solution and determine their spin and astrometric parameters, as well as further investigate this through measurements of pulsar flux densities and spectral indices. We will also perform a polarimetric analysis across a wide frequency range to better constrain the pulsars' geometries and emission properties.
DOI: 10.25919/a2d6-hq91
title: Parkes observations for project PX500 semester 2025APRS_02

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries. As the observing time has been purchased this proposal (and the related PX501) does not require TAC grading. The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first, relating to this proposal, will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period. The second type of time will be scheduled in shorter blocks and the data archived with a 10 year embargo.
DOI: 10.15468/dl.yg53b7
title: Occurrence Download

description: A dataset containing 15408 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate reprojected, The taxon concept ID was not used in backbone matching, The taxon ID was not used in backbone matching, Coordinate rounded, Continent derived from coordinates, Country derived from coordinates)",
 "OccurrenceStatus is Present",
 "TaxonKey is Aegypius monachus (Linnaeus, 1766)",
 "Year 1970-2015"
 ]
}

 The dataset includes 15408 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001437-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x82sfr
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Rhododendron pomense Cowan & Davidian"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001198-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z45weu
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((12.94796 29.47918,73.05204 29.47918,73.05204 53.52082,12.94796 53.52082,12.94796 29.47918))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Carpomya pardalina (Bigot, 1891)"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001193-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bpem7u
title: Occurrence Download

description: A dataset containing 13070 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thunnus albacares",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1970",
 "Year is less than or equal to 1979"
 ]
}

 The dataset includes 13070 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006762-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ptwx8s
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Begonia callistemon"
 ]
}

 The dataset's 1 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006756-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jm9yyb
title: Occurrence Download

description: A dataset containing 3548 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aythya baeri"
 ]
}

 The dataset includes 3548 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006763-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k2ecqc
title: Occurrence Download

description: A dataset containing 8380 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thunnus albacares",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 1989"
 ]
}

 The dataset includes 8380 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006765-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrvxxa
title: Occurrence Download

description: A dataset containing 70716 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Anser cygnoides"
 ]
}

 The dataset includes 70716 records from 190 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006731-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csq92m
title: Occurrence Download

description: A dataset containing 5022 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Scaptotrigona pectoralis"
 ]
}

 The dataset includes 5022 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006764-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hhkqpw
title: Occurrence Download

description: A dataset containing 142034 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is fd515d3a-b237-42de-bba6-760008580da5",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 142034 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006759-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30663536
title: Processed single-cell RNA-seq dataset of cancer-associated fibroblasts in breast cancer patients receiving anti–PD-1 therapy

description: This dataset contains the processed single-cell RNA sequencing (scRNA-seq) data used in the study <b>“Molecular Remodeling of Cancer-Associated Fibroblasts in Breast Cancer Patients Receiving Anti–PD-1 Immunotherapy”</b> (Do et al., 2025).<br>All data included here were <b>reprocessed and analyzed from publicly available sources</b>. No raw sequencing reads are redistributed.<b>Source of Original Data</b>The dataset is derived from the <b>BioKey study</b>, whose raw scRNA-seq, scTCR-seq, and CITE-seq reads are deposited under <b>restricted access</b> in the European Genome-phenome Archive (EGA):Study: <b>EGAS00001004809</b>Raw single-cell reads: <b>EGAD00001006608</b>Processed per-patient count matrices available at: <i>http://biokey.lambrechtslab.org</i>Access to raw reads requires approval from the UZ Leuven–VIB Data Access Committee according to GDPR regulations.<br>This Figshare deposit <b>does not include any raw sequencing files</b>, in compliance with the restrictions of the original study.<b>Content of the Deposited Files</b><b>1. </b><code><strong>cohort1.h5ad</strong></code><b> (AnnData object)</b>This file contains the <b>processed, normalized, and annotated gene expression matrix</b> for fibroblast and stromal cells from <b>31 treatment-naive breast cancer patients</b> receiving a single dose of pembrolizumab.<b>2. </b><code><strong>cohort1_metadata.csv</strong></code>This file contains the <b>complete cell-level metadata</b> corresponding to the <code>.h5ad</code> object.<b>Intended Use</b>This dataset is shared to support transparency and reproducibility of the analyses performed in our study, specifically:identification of CAF subtypesdifferential expression analysispathway enrichmentcell–cell interaction inferencecross-dataset validationThe data may be freely reused for research and educational purposes, provided proper citation.<b>Citation</b>If using this dataset, please cite:<b>Khanh Van Do, An Van Tran, Anh Duc Pham, Trang Thu Mac, Thang </b><b>Luong Pham and Han Ngoc Do. Molecular Remodeling of Cancer-Associated Fibroblasts in Breast Cancer Patients Receiving Anti–PD-1 Immunotherapy. (2025).</b>And acknowledge the <b>original BioKey study</b> that generated the raw sequencing data.
DOI: 10.6084/m9.figshare.30663536.v1
title: Processed single-cell RNA-seq dataset of cancer-associated fibroblasts in breast cancer patients receiving anti–PD-1 therapy

description: This dataset contains the processed single-cell RNA sequencing (scRNA-seq) data used in the study <b>“Molecular Remodeling of Cancer-Associated Fibroblasts in Breast Cancer Patients Receiving Anti–PD-1 Immunotherapy”</b> (Do et al., 2025).<br>All data included here were <b>reprocessed and analyzed from publicly available sources</b>. No raw sequencing reads are redistributed.<b>Source of Original Data</b>The dataset is derived from the <b>BioKey study</b>, whose raw scRNA-seq, scTCR-seq, and CITE-seq reads are deposited under <b>restricted access</b> in the European Genome-phenome Archive (EGA):Study: <b>EGAS00001004809</b>Raw single-cell reads: <b>EGAD00001006608</b>Processed per-patient count matrices available at: <i>http://biokey.lambrechtslab.org</i>Access to raw reads requires approval from the UZ Leuven–VIB Data Access Committee according to GDPR regulations.<br>This Figshare deposit <b>does not include any raw sequencing files</b>, in compliance with the restrictions of the original study.<b>Content of the Deposited Files</b><b>1. </b><code><strong>cohort1.h5ad</strong></code><b> (AnnData object)</b>This file contains the <b>processed, normalized, and annotated gene expression matrix</b> for fibroblast and stromal cells from <b>31 treatment-naive breast cancer patients</b> receiving a single dose of pembrolizumab.<b>2. </b><code><strong>cohort1_metadata.csv</strong></code>This file contains the <b>complete cell-level metadata</b> corresponding to the <code>.h5ad</code> object.<b>Intended Use</b>This dataset is shared to support transparency and reproducibility of the analyses performed in our study, specifically:identification of CAF subtypesdifferential expression analysispathway enrichmentcell–cell interaction inferencecross-dataset validationThe data may be freely reused for research and educational purposes, provided proper citation.<b>Citation</b>If using this dataset, please cite:<b>Khanh Van Do, An Van Tran, Anh Duc Pham, Trang Thu Mac, Thang </b><b>Luong Pham and Han Ngoc Do. Molecular Remodeling of Cancer-Associated Fibroblasts in Breast Cancer Patients Receiving Anti–PD-1 Immunotherapy. (2025).</b>And acknowledge the <b>original BioKey study</b> that generated the raw sequencing data.