cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8134.2/14.2
title: T.longispinosus_tandem

description: Same as Genepop file, but now in Tandem format
DOI: 10.5061/dryad.8134.2/15.2
title: RscriptMicroSatsWithPermutation

description: R script to calculate D and Gst and the associated p-values
DOI: 10.5061/dryad.8134.2/16.2
title: RAllPops_D_Gst_MtDNA_PenningsJEB2011

description: This is R code to calculate Jost D and Gst and the associated p-values (using a permutation test) for MtDNA sequences. There are two versions. The first one (RPairw_D_MtDna_Penningsjeb2011.r) calculates pairwise values (between all pairs of populations in your data) and the second one (RAllPops_D_MtDNA_PenningsJEB2011.r) calculates one global value.
DOI: 10.5061/dryad.8134.2/17.2
title: RPairw_D_Gst_MtDna_Penningsjeb2011

description: This is R code to calculate Jost D and Gst and the associated p-values (using a permutation test) for MtDNA sequences. There are two versions. The first one (RPairw_D_MtDna_Penningsjeb2011.r) calculates pairwise values (between all pairs of populations in your data) and the second one (RAllPops_D_MtDNA_PenningsJEB2011.r) calculates one global value.
DOI: 10.5061/dryad.8134.2/18.2
title: RScript_MtDNA_JostD_and_Gst_Permutation
DOI: 10.5061/dryad.352th/1
title: Niche Reconstruction & Hypothesis Testing

description: R script for niche reconstruction and hypothesis testing. Written for R version 3.1.0 Patched (2014-04-10 r65396) -- "Spring Dance" on  x86_64-apple-darwin10.8.0 (64-bit) platform.
DOI: 10.5061/dryad.352th/2
title: Project Directory

description: Data to perform analysis in script NicheReconstruction&HypothesisTesting.R. Includes phylogenetic tree, environmental projection data for Northern Hemisphere oceans, median suitability from ecological niche models, and median ecological niche model projection results. Refer to manuscript for additional information on data sources and processing.
DOI: 10.5061/dryad.51vs3/1
title: Combined Survey Responses

description: This spreadsheet shows the combined survey responses from Dryad Digital Repository, Figshare and TreeBASE survey populations.
DOI: 10.5061/dryad.60pq3/1
title: Data from Chapman et al (JAE)

description: All data, raw and summarized. All analyses were performed in SPSS (release 21.0.0.0)
DOI: 10.5061/dryad.8134.1
title: Data from: Similar evolutionary potentials in an obligate ant parasite and its two host species
DOI: 10.5061/dryad.ft8pq/1
title: male viability

description: Survival data for reciprocal transplant of dusted males caught across two environments and four replicate populations between 2006-2008.
DOI: 10.5061/dryad.ft8pq/2
title: male_viability_lab

description: Survival times (in hours) of wild caught males, kept in a laboratory from four populations, spanning the two environments of interest
DOI: 10.5061/dryad.ft8pq/3
title: female_fecundity

description: fecundity data for females found to have mated with dusted males
DOI: 10.5061/dryad.gm2sm/1
title: Ahklun Mountain glacier status in 2009

description: Ahklun Mountain glacier status in 2009, area, and mapping confidence at three time steps for a subset of 76 glaciers.
DOI: 10.5061/dryad.gm2sm/2
title: Mapping confidence of Ahklun Mountain glacier files

description: Mapping confidence at three time steps for 76 Ahklun Mountain glaciers, southwestern Alaska.
DOI: 10.5061/dryad.38417/1
title: combined-all-taxa-ML.phy

description: Combined DNA and morphological data for all taxa of squamate study
DOI: 10.5061/dryad.38417/2
title: weighted combined analyses

description: Data files used in the combined data weighted analyses where the DNA data was recoded to 63 binary characters.
DOI: 10.5061/dryad.b028h/1
title: supplementary Table

description: SUPPLEMENTARY TABLE. Ratios of stable isotopes of carbon and nitrogen in shells sampled from modern and archaeological sites of northern-central Patagonia (Río Negro and Chubut) and southern Patagonia (Tierra del Fuego).
DOI: 10.5061/dryad.ft8pq/4
title: sexual_isolation

description: females caught at 4 replicate population across two environments that had mated with marked males
DOI: 10.5061/dryad.ft8pq/5
title: worldclim_data

description: This file contains the location and distance from coast for our 258 randomly generated populations. To add the 9 variables from the WorldClim dataset please see the readme.txt file
DOI: 10.5061/dryad.pb730/1
title: Riparian plant diversity, biomass, species occurence, and environmental variables

description: All data for plant diversity, biomass, species occurrence, and environmental variables used in Hasselquist et al.
DOI: 10.5061/dryad.sb295/1
title: Salamander metamorph body size data

description: Columns indicate: Date = the date of metamorphosis, Day = the day of the experiment, Tank = the experimental tank, Block = the experimental block, Treatment = the experimental treatment, Density = the categorical overall density, Mole = the number of mole salamanders (Ambystoma talpoideum), Spotted = the number of spotted salamanders (Ambystoma maculatum), Species = the species of salamander (talp = Ambystoma talpoideum; mac = Ambystoma maculatum), SVL = metamorph snout-vent length (in cm), and Mass = metamorph mass (in grams).
DOI: 10.5061/dryad.sb295/2
title: Survival Data

description: Columns indicate: Block= the block, Treatment = the experimental treatment, the tank, Density = the categorical density, Species = the salamander species (talp = Ambystoma talpoideum; mac = Ambystoma maculatum), Mole = the number of mole salamanders (Ambystoma talpoideum), Spotted = the number of spotted salamanders (Ambystoma maculatum), Total = the number of surviving salamanders, and Survival = the percent survival.
DOI: 10.5061/dryad.sb295/3
title: R code for analysis and figures

description: Comments are added within the code
DOI: 10.5061/dryad.38417/3
title: morphological partition analyses

description: Data sets used in the morphological partition analyses
DOI: 10.5061/dryad.38417/4
title: squamateDNA-Bayes

description: This data file used for the DNA only Bayesian analyses of extant taxa.  The same data and alignments used in the ML and parsimony analyses.
DOI: 10.5061/dryad.38417/5
title: morphology_alltaxa

description: MrBayes formatted file for Bayesian analyses including ordered multistate characters.  The same character matrix was also used in the Bayesian analyses and parsimony analyses with all characters as unordered.
DOI: 10.5061/dryad.38417/6
title: morphology_alltaxa_ML

description: Morphological data matrix for ML analyses of all taxa.
DOI: 10.5061/dryad.88qt1/1
title: all data underlying the publication

description: All data were collected within the same natural colony in Lake Tanganyika. Each column is commented on, explaining what the respective data mean. Names of territories and fish were arbitrarily chosen.
DOI: 10.5061/dryad.g633d/1
title: Data from: Optimal numbers of matings: the conditional balance between benefits and costs of mating for females of a nuptial gift-giving spider
DOI: 10.5061/dryad.mj226/1
title: manuscript source .Rmd

description: .Rmd file containing the source code for all results presented in the paper, along with raw manuscript text documenting the data and figures shown.
DOI: 10.5061/dryad.ns313/1
title: Data symeon plos1 undernutrition rab
DOI: 10.5061/dryad.pq482/1
title: Genomic sequence data

description: The sequence data file is provided as a ZIP archive containing 3 subfolders, one for each of the three analyzed species (i.e. Lco - Leopardus colocolo; Lge - Leopardus geoffroyi ; Lgu - Leopardus guigna). For each of these species the following sequence files are provided in the fasta format:- unmasked genomic consensus sequence computed for each and all the Asip and Mc1r loci fragments (i.e. for Leopardus colocolo the unmasked consensus sequence file is labeled Lco.fa);- genomic consensus sequence computed for each and all of the Asip and Mc1r loci fragments and masked for repeats and low complexity sequence using RepeatMasker (i.e. for Leopardus colocolo the masked consensus sequence file is labeled Lco_rm.fa);- haplotype sequence data for each of the genomic fragments and each of the analyzed samples, one file per fragment (i.e. Lco_AsipA for AsipA fragment) containing two haplotypic sequences per sample. These sequences are labeled by indicating the genomic fragment, the species, the individual and finally the haplotype (i.e. AsipA_Lco-030_h1 [organism=Leopardus colocolo] ASIP locus segment A). The samples are labeled using the same identifiers as those provided in the manuscript (see Table S1 for details).
DOI: 10.5061/dryad.15fv2/1
title: Tweets database, part 1 of 5

description: Postgres database of tweets (backup created by pg_dump in pgAdmin). Partitioned into 5 smaller files with 'split' command. To assemble use "cat rawdata[1-5] &gt; combined_rawdata.backup"
DOI: 10.5061/dryad.15fv2/2
title: Tweets database, part 2 of 5

description: Postgres database of tweets (backup created by pg_dump in pgAdmin). Partitioned into 5 smaller files with 'split' command. To assemble use "cat rawdata[1-5] &gt; combined_rawdata.backup"
DOI: 10.5061/dryad.15fv2/3
title: Tweets database, part 3 of 5

description: Postgres database of tweets (backup created by pg_dump in pgAdmin). Partitioned into 5 smaller files with 'split' command. To assemble use "cat rawdata[1-5] &gt; combined_rawdata.backup"
DOI: 10.5061/dryad.15fv2/4
title: Tweets database, part 4 of 5

description: Postgres database of tweets (backup created by pg_dump in pgAdmin). Partitioned into 5 smaller files with 'split' command. To assemble use "cat rawdata[1-5] &gt; combined_rawdata.backup"
DOI: 10.5061/dryad.15fv2/5
title: Tweets database, part 5 of 5.

description: Postgres database of tweets (backup created by pg_dump in pgAdmin). Partitioned into 5 smaller files with 'split' command. To assemble use "cat rawdata[1-5] &gt; combined_rawdata.backup"
DOI: 10.5061/dryad.mj226/2
title: supplement source .Rmd

description: A plain-text (.Rmd) file containing all code run in the supplement, together with descriptions.
DOI: 10.5061/dryad.mj226/3
title: CSV files for figures

description: All data tables used to generate figures as CSV files by figure name. (20 files, 13 MB). Note, all data are from simulations, not true observations, and can also be re-generated by running the code provided.  See corresponding code blocks of Manuscript.Rmd and Supplement.Rmd for details.
DOI: 10.5061/dryad.mj226/4
title: Knitr cache file

description: This cache file stores the results of running each of the code chunks in manuscript.Rmd and supplement.Rmd, see http://yihui.name/knitr for details on caching.
DOI: 10.5061/dryad.15fv2/10
title: Followees database, part 5 of 9

description: Postgres database of followees (backup created by pg_dump in pgAdmin). Partitioned into 9 smaller files with 'split' command. To assemble use "cat followees[1-9] &gt; combined_followees.backup"
DOI: 10.5061/dryad.15fv2/11
title: Followees database, part 6 of 9

description: Postgres database of followees (backup created by pg_dump in pgAdmin). Partitioned into 9 smaller files with 'split' command. To assemble use "cat followees[1-9] &gt; combined_followees.backup"
DOI: 10.5061/dryad.15fv2/12
title: Followees database, part 7 of 9

description: Postgres database of followees (backup created by pg_dump in pgAdmin). Partitioned into 9 smaller files with 'split' command. To assemble use "cat followees[1-9] &gt; combined_followees.backup"
DOI: 10.5061/dryad.15fv2/13
title: Followees database, part 8 of 9

description: Postgres database of followees (backup created by pg_dump in pgAdmin). Partitioned into 9 smaller files with 'split' command. To assemble use "cat followees[1-9] &gt; combined_followees.backup"
DOI: 10.5061/dryad.15fv2/14
title: Followees database, part 9 of 9

description: Postgres database of followees (backup created by pg_dump in pgAdmin). Partitioned into 9 smaller files with 'split' command. To assemble use "cat followees[1-9] &gt; combined_followees.backup"
DOI: 10.5061/dryad.15fv2/15
title: Data structure and instructions

description: Contains data description and instructions to recombine database backup and restore data tables
DOI: 10.5061/dryad.15fv2/6
title: Followees database, part 1 of 9

description: Postgres database of followees (backup created by pg_dump in pgAdmin). Partitioned into 9 smaller files with 'split' command. To assemble use "cat followees[1-9] &gt; combined_followees.backup"
DOI: 10.5061/dryad.15fv2/7
title: Followees database, part 2 of 9

description: Postgres database of followees (backup created by pg_dump in pgAdmin). Partitioned into 9 smaller files with 'split' command. To assemble use "cat followees[1-9] &gt; combined_followees.backup"
DOI: 10.5061/dryad.15fv2/8
title: Followees database, part 3 of 9

description: Postgres database of followees (backup created by pg_dump in pgAdmin). Partitioned into 9 smaller files with 'split' command. To assemble use "cat followees[1-9] &gt; combined_followees.backup"
DOI: 10.5061/dryad.15fv2/9
title: Followees database, part 4 of 9

description: Postgres database of followees (backup created by pg_dump in pgAdmin). Partitioned into 9 smaller files with 'split' command. To assemble use "cat followees[1-9] &gt; combined_followees.backup"
DOI: 10.5061/dryad.g7g0n/1
title: mitochondrial

description: Nexus alignments of mtDNA protein coding sequences from one-to-one orthologs of Mouse, Human and Opossum. The Ensembl release 68 stable ID for the Human gene is used as the filename. Species common names are used as the sequence labels.
DOI: 10.5061/dryad.g7g0n/2
title: nuclear

description: Nexus alignments of nuclear protein coding sequences from one-to-one orthologs of Mouse, Human and Opossum. The Ensembl release 68 stable ID for the Human gene is used as the filename. Species common names are used as the sequence labels.
DOI: 10.5061/dryad.g7g0n/3
title: microbial

description: Nexus formatted alignments of 16S rRNA sequences from 3 microbial species. Files differ in species triples present. These alignments were derived from  http://www.secondgenome.com/go/2011-greengenes-taxonomy/. File names are the greengenes sequence identifiers.
DOI: 10.5061/dryad.g7g0n/6
title: Online appendix

description: Supplementary figures and table.
DOI: 10.5061/dryad.mg5ng/1
title: Individual sensitivity thresholds

description: Individual sensitivity thresholds determined by evoked potentials.
DOI: 10.5061/dryad.n4v3b/1
title: Supplementary Mathematica file_Immler&Otto

description: Mathematica file containing full models and approximations referred to in the manuscript.
DOI: 10.5061/dryad.2hv7d/2
title: Supplemental File 2

description: A spreadsheet with all the A-to-G modification sites detected in the coding regions of the squid, along with their number of supporting reads in the five tissues studied.
DOI: 10.5061/dryad.bp907/1
title: Genotypic data and spatial coordinates of female moose in Alaska

description: This file contains genotype data from ten microsatellites and spatial coordinates of female moose from two populations in south-central Alaska (Anchorage and Kenai Peninsula Game Management Unit 15C).  Individuals are also indicated whether they were part of a telemetry/movement study (collared) from which annual home range size was estimated or if sample was obtained from a hunter.  This file was used for to generate infiles for genetic structure analyses in Geneland and R package adegent (sPCA).
DOI: 10.5061/dryad.bp907/2
title: Geneland infiles

description: This zipped folder contains the infiles for used for the program Geneland.  The spatial coordinate file is in UTMs (zone 6 for Anchorage and zone 5 for Kenai Peninsula Game Management Unit 15C).
DOI: 10.5061/dryad.bp907/3
title: sPCA infiles

description: This zipped folder contains the infiles (genepop and coordinate files) for used for the sPCA analysis in the R package adegenet.
DOI: 10.5061/dryad.d048q/1
title: SeedPulls_data

description: This file contains the raw and synthesized data from laboratory trials in which the force required to remove a seed from C, nutans capitula was measured with an ergometer.
DOI: 10.5061/dryad.d048q/2
title: TVdrops_data

description: This data is comprised of terminal velocity trials on seeds extracted from maternal capitula in different regions of the capitular disk.
DOI: 10.5061/dryad.dh777/1
title: figure2data_wholenetworks

description: See Description in file - "1) id.info - the names of the vector represent the names of the individuals making up the networks in all other files, the vector values give whether the individual has an odd (=1) or even (=0) pit tag","2) whole.networks - this list contains the whole networks as given as points in figure 2 (see names on list)"
DOI: 10.5061/dryad.dh777/2
title: figure3data_6daynetworks

description: See description in file - "1) list.6.day.networks - list contains the networks of the 6 day periods shown in Figure 3, in chronological order"
DOI: 10.5061/dryad.dh777/3
title: Table1_contextcomparisons

description: See description in file - "1) sites.vs.patches - the 3 parts of the list give the networks used in table 3 for comparing the selective feeder sites with the open patches, and spatial cooccurences. Networks in chronological order.","2) sites.vs.boxes - same as (1) but for networks at nestboxes instead of the open patches"
DOI: 10.5061/dryad.510tp/1
title: nuDNA Meg14 fasta file

description: Contains fasta sequences of anonymous locus Meg14 for all individuals used in this study
DOI: 10.5061/dryad.510tp/2
title: nuDNA Meg15 fasta file

description: Contains fasta sequences of anonymous locus Meg15 for all individuals used in this study
DOI: 10.5061/dryad.510tp/3
title: nuDNA Meg52 fasta file

description: Contains fasta sequences of anonymous locus Meg52 for all individuals used in this study
DOI: 10.5061/dryad.510tp/4
title: nuDNA Meg60 fasta file

description: Contains fasta sequences of anonymous locus Meg60 for all individuals used in this study
DOI: 10.5061/dryad.510tp/5
title: nuDNA Meg77 fasta file

description: Contains fasta sequences of anonymous locus Meg77 for all individuals used in this study
DOI: 10.5061/dryad.510tp/6
title: nuDNA Meg119 fasta file

description: Contains fasta sequences of anonymous locus Meg119 for all individuals used in this study
DOI: 10.5061/dryad.510tp/7
title: TableS6 - CHC profiles

description: Contains a table with individual cuticular profiles for all individuals used in this study
DOI: 10.5061/dryad.510tp/8
title: TableS7 - Morphometric characters

description: Contains a table with measurements of twelve characters of the legs for all individuals used in this study
DOI: 10.5061/dryad.510tp/9
title: Digital_Images_Cephalothorax_dorsal_Megabunus

description: Contains digital images of the cephalothorax in dorsal view for all individuals used in this study
DOI: 10.5061/dryad.2m1p0/2
title: Alignment of 310 bp. mtDNA control region fragment of M. schreibersii
DOI: 10.5061/dryad.2m1p0/3
title: Alignment of 480bp. 16SrDNA fragment of N. schmidlii
DOI: 10.5061/dryad.2m1p0/4
title: Microsatellite genotype, sex and site of capture of M. schreibersii
DOI: 10.5061/dryad.2m1p0/5
title: Microsatellite genotype, sex, host and site of capture of N. schmidlii
DOI: 10.5061/dryad.510tp/10
title: 16srRNA fasta file

description: Contains fasta sequences of mitochondrial 16SrRNA for all individuals used in this study
DOI: 10.5061/dryad.fd128/1
title: Data from: Odourant dominance in olfactory mixture processing: what makes a strong odourant

description: Responses of Overshadowing groups (AB trained), and Control groups (A trained and B trained) after one conditioning trial
DOI: 10.5061/dryad.fd128/2
title: Data from: Odourant dominance in olfactory mixture processing: what makes a strong odourant

description: Responses of Overshadowing groups (AB trained), and Control groups (A trained and B trained) after three conditioning trials
DOI: 10.5061/dryad.hf7gg/1
title: Gordon.et.al.2015_Data

description: Excel file containing raw data used in analyses.  The Experiment 1 tab holds data relating to the Experiment 1 section of the paper. The Experiment 2 tab holds data relating to the Experiment 2 section of the paper. The Abundance_SpotlightData tab holds data relating to the Dingo, fox, cat and N. fuscus abundance section of the paper.
DOI: 10.5061/dryad.2m1p0/1
title: Alignment of 704bp cytb-fragment of P. melanipherus
DOI: 10.5061/dryad.772qd/1
title: Tall Thistle Plant Data Set

description: Data collected in which rows correspond to individual plants in the experiment
DOI: 10.5061/dryad.772qd/2
title: Flower Head Data Set

description: Tall Thistle Flower Head Data Set
DOI: 10.5061/dryad.88606/1
title: Raw data_MEC-14-1210.R2

description: Data for adult morphology and coloration, egg weight and larval morphormetric traits, and data for gene expression. Ten separate files plus one Readme file are included in the data.
DOI: 10.5061/dryad.8t4gp/1
title: Sequence alignment (MrBayes)

description: Nexus-formatted sequence alignment for five locus + gap plastid phylogenetic analysis of Neotropical Lobelioideae (includes MrBayes block)
DOI: 10.5061/dryad.8t4gp/2
title: Sequence alignment (RAxML)

description: Phylip-formatted sequence alignment for 5-locus + gap maximum likelihood phylogenetic analysis of the Neotropical Lobelioideae (RAxML)
DOI: 10.5061/dryad.8t4gp/3
title: Partition file (RAxML)

description: Partition file for Sequence Alignment (RAxML)
DOI: 10.5061/dryad.8t4gp/4
title: Sequence alignment (PhyloBayes)

description: Phylip-formatted sequence alignment for 5-marker plastid phylogenetic analysis of Neotropical Lobelioideae in PhyloBayes (no gap data)
DOI: 10.5061/dryad.jt8hj/1
title: Appendix A

description: Detailed list of collection depths and dates, as well as sampling sites with latitude/longitude coordinates and the coral cover observed around each of the 74 Leptoseris spp. samples shown for each coral sample, including the 12 Leptoseris samples that were subjected to additional genotyping from the calyx and/or other coenosarc region. Symbiodinium spp. ITS2 sequence (specific ITS2 sequence type names are shown, followed by numbers in superscript indicating how many time each type was recovered). Finally, the Leptoseris spp. clades based on the COX-1-1 mtDNA and corresponding GenBank accession numbers are shown in the last two column.
DOI: 10.5061/dryad.m713m/1
title: data

description: t-maps for every subject and stimulation site, together with template brain
DOI: 10.5061/dryad.4n2c4/1
title: mtDNA_sequence_BEASTanalysis

description: MtDNA nexus file
DOI: 10.5061/dryad.4n2c4/2
title: mtDNA_sequence_BEASTanalysis

description: mtDNA sequence file; input for BEAST analysis
DOI: 10.5061/dryad.4n2c4/3
title: mtDNA_sequence_BEASTanalysis

description: mtDNA chronogram estimated from BEAST
DOI: 10.5061/dryad.4n2c4/4
title: DMW_sequence_BEASTanalysis

description: DMW nexus file
DOI: 10.5061/dryad.772qd/3
title: Greenhouse Seed Quality Data Set

description: Data for effects of apical meristem mining on seed and seedling quality
DOI: 10.5061/dryad.772qd/4
title: Terminal Head Position Diameter and Seeds

description: Data for effects of flower head position within a plant on seeds production
DOI: 10.5061/dryad.772qd/5
title: Axial Head Position Diameter and Seeds

description: Data for comparison of terminal vs. axial flower heads
DOI: 10.5061/dryad.1gm13/1
title: EmpPrior.0.1.1_Dryad
DOI: 10.5061/dryad.4n2c4/10
title: Autosomal_starBEAST_analysis

description: Autosomal *BEAST input file
DOI: 10.5061/dryad.4n2c4/11
title: Autosomal_starBEAST_analysis

description: Autosomal *BEAST chronogram
DOI: 10.5061/dryad.4n2c4/12
title: BPP_sequences

description: BPP sequence input file
DOI: 10.5061/dryad.4n2c4/5
title: DMW_sequence_BEASTanalysis

description: DMW sequence file; input for BEAST
DOI: 10.5061/dryad.4n2c4/6
title: DMW_sequence_BEASTanalysis

description: DMW chronogram estimated from BEAST
DOI: 10.5061/dryad.4n2c4/7
title: STRUCTURE_Input

description: Structure input file
DOI: 10.5061/dryad.4n2c4/8
title: TESS_fullAnalysis_Input

description: TESS full data input file
DOI: 10.5061/dryad.4n2c4/9
title: TESS_reducedSample_Input

description: TESS reduced sample input file