cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.qk8v9g1/1
title: Data_Demina_etal_2018

description: This Zip archive includes one csv- and one txt -file. These files provide all data used for the analyses included in the research article along with short description of columns in the data table.
DOI: 10.5061/dryad.rq66m98/1
title: Clutch size

description: Nesting data from 2016-2017 from Eastern Water Dragons at Roma Street Parklands. File includes Nest (1 presence), name of the nest, latitude, longitude, slope measured in degrees, canopy cover, soil compactness (kg/cm), soil type, top soil type, clutch size, mother of the clutch (if known), and season nest was found.
DOI: 10.5061/dryad.rq66m98/2
title: Enviro_data_master

description: File includes environmental variables for Eastern Water Dragon nests and randomly sampled points at Roma Street Parklands. Data is displayed as follows: Nest (1 = presence, 0 = absence), ID of nest or random point, latitude, longitude, compass aspect of the point or nest sampled, slope in degrees, canopy cover, soil compactness (kg/cm), soil type of the nest, top soil, mother of the nest (if known), and season the nest was collected.
DOI: 10.5061/dryad.rq66m98/3
title: Maternal_excursions

description: File includes data for maternal excursions for Eastern Water Dragons at Roma Street Parklands. Data is as follows: ID of nest, maternal ID, total area of mothers 95% KUD (home range), proportion of sand in that home range, proportion of loam in that home range, number of points sampled in home range, number of loam points sampled in home range, number of sand points sampled in home range, nest soil type, excursion behaviour of mother (1 = nesting excursion, 0 = no excursion), length of the excursion, log transformed length of excursion, and log10 transformed length.
DOI: 10.5061/dryad.rq66m98/4
title: nest depth

description: Includes nest depth measurements for Eastern Water Dragons at Roma street Parklands over 2016-2017 nesting seasons.
DOI: 10.5061/dryad.rs776p3/1
title: alldata_attributed_v04122017

description: More information can be found on the Midwest Avian Data Center, a regional node of the Avian Knowledge Network, hosted by Point Blue Conservation Science (http://data.pointblue.org/partners/mwadc/) or through the Zipkin Quantitative Ecology Lab GitHub page (https://zipkinlab.github.io/).
DOI: 10.5061/dryad.s31rc70/1
title: amino acid alignment - tree figure 2A
DOI: 10.5061/dryad.s31rc70/2
title: Output RAxML tree - figure 2A
DOI: 10.5061/dryad.tq4qr23/1
title: Description of datasets

description: A brief description of the datasets used in our study
DOI: 10.17632/4cpv86ry35.2
title: Data for: Transforming screening uptake in low-resource and under-informed populations: a preliminary study of factors influencing women’s decisions to uptake screening

description: Dataset represents women's response about factors that influence decision to utilize screening mammography
DOI: 10.17632/77c986vmn9.1
title: Data for: Influence of the North Atlantic Oscillation on δD and δ18O in meteoric water in the Armenian Highland

description: Stable Isotope values of precipitation samples collected in Armenia in 2012-2013
DOI: 10.17632/y89k76jkn3.1
title: Data for: Of fractal and Fourier: A new measure for local shape complexity for neurological applications

description: Code used in the generation of simulated data, and analysis of the methods described in this paper.
DOI: 10.5061/dryad.1qc2r30/1
title: Figure Supple1. (A) qRT-PCR analysis of miR-322, miR-503 mRNA levels in in vivo myocardial I/S model. (B). Cell apoptosis was determined by Flow analysis in H9c2 cells transfected with shNC or shSmurf2. (C). Cell apoptosis was determined by Flow analysis in H9c2 cells with EZH2 overexpression. (D). Cell apoptosis was determined by Flow analysis in H9c2 cells with Smurf2 overexpression. All the results were shown as mean ± SD (n = 3); * p&lt; 0.05 and ** p &lt; 0.01.
DOI: 10.5061/dryad.1rj6442/1
title: Microsatellite dataset

description: Microsatellite dataset including genotype at each of the 14 study loci and multilocus genotype (MLG) with their code as used in Fig. 1 of the associated paper. Sampling information (populations code, collectors, sampling year, number of individuals genotyped with microsatellite markers) are detailed in Table S1 of the associated paper.
DOI: 10.5061/dryad.1rj6442/2
title: RADseq VCF file (Sargassum muticum)

description: VCF file with ddRad-seq dataset. This dataset comprises 8788 polymorphic loci in a sample of 300 individuals from 21 sampling sites. Raw data had been filtered to keep loci genotyped in minimum 80% of the populations and 50% of individuals per population, representing 20% missing data across the whole dataset. Individual codes are described in the associated microsatellite dataset (see Excell file) and Table S1 of the associated paper.
DOI: 10.5061/dryad.2nv32qh/1
title: OTU table

description: This table list percentage relative abundance for each OTU retained after the sequence quality filtering pipeline for each sample included in this study. The treatment group (both clutch and environmental exposure time) is also listed for each sample.
DOI: 10.5061/dryad.4kd3dq5/28
title: pondsAll.fixedgeno
DOI: 10.5061/dryad.4kd3dq5/29
title: pondsAll.pheno
DOI: 10.5061/dryad.4kd3dq5/30
title: qtl mapping all fam fixed markers
DOI: 10.5061/dryad.4kd3dq5/31
title: README
DOI: 10.5061/dryad.4kd3dq5/32
title: Rqtl
DOI: 10.5061/dryad.4kd3dq5/33
title: SB_stampy_gatk_pipe_v4
DOI: 10.5061/dryad.4kd3dq5/34
title: Size_adjusted_phenotypes
DOI: 10.5061/dryad.4kd3dq5/35
title: vcf2vertical_dep_GATK33_full2
DOI: 10.5061/dryad.6v2k320/1
title: Data file for analysis

description: This file contains all of the data used in the empirical analysis of moose selection for conifer and balsam fir in Isle Royale National Park
DOI: 10.5061/dryad.7482v2n/1
title: CNN Test Imagery and Labels

description: This zip file includes the test images used for reported metrics along with the via_region_data.json label file that has the mask shapes in JSON format as needed for the neural network. Species specific .json files are also included.
DOI: 10.5061/dryad.7482v2n/2
title: CNN Training Imagery and Labels Subset 1

description: This zip file includes the first subset of training images used for training this CNN. This data is only subset for ease of upload and download but should be combined by the user on their local machine. The full label file for all training data is included with both subsets and is identical. That file "via_region_data.json" has the mask shapes in and species IDs in a JSON format as needed for the neural network.
DOI: 10.5061/dryad.7482v2n/3
title: CNN Training Imagery and Labels Subset 2

description: This zip file includes the second subset of training images used for training this CNN. This data is only subset for ease of upload and download but should be combined by the user on their local machine. The full label file for all training data is included with both subsets and is identical. That file "via_region_data.json" has the mask shapes in and species IDs in a JSON format as needed for the neural network.
DOI: 10.5061/dryad.7482v2n/4
title: CNN Validation Imagery and Labels

description: This zip file includes the validation images used for training this CNN. The label file for all validation data is included. That file "via_region_data.json" has the mask shapes in and species IDs in a JSON format as needed for the neural network.
DOI: 10.5061/dryad.78j501j/2
title: Correspondence between plate codes and sample codes.

description: This file includes the correspondece between plate codes and sample codes for the 120 Taxus baccata samples.
DOI: 10.5061/dryad.78j501j/3
title: Taxus Shoot Growth Data

description: This file contains data for Taxus baccata shoot growth measured in the Valsaín clonal bank during four consecutive years (2009-2012). The file also contains individual information about provenance (population), genet and sex.
DOI: 10.5061/dryad.78j501j/4
title: Taxus Shoot Elongation

description: This file contains data for Taxus baccata phenology of shoot elongation from 2010 to 2012. The file also contains individual information about provenance (population), genet and sex.
DOI: 10.5061/dryad.78j501j/5
title: Taxus Male Strobili

description: This file contains data for Taxus baccata phenology of male strobili maturation from 2010 to 2012. The file also contains individual information about provenance (population) and genet.
DOI: 10.5061/dryad.7dk08bc/1
title: WST-8 measurement of N1E-115 activity after 5 hours of hypoxia and 5 hours of hypoxia+24 hours of normoxia

description: This file contains is the data for Fig 1C. It includes the raw Wst-8 measurements of N1E-115 cells after 5 hours of hypoxia and 5 hours of Hypoxia+24 hours of normoxia and these measurements normalized to 100.
DOI: 10.5061/dryad.7dk08bc/2
title: N1E-115 survival after Ciliobrevin Treatment

description: This file contains the WST8 measurements for N1E-115 survival after Ciliobrevin D treatment (sheet B) and N1E-115 survival after hypoxia and Ciliobrevin D treatment (sheet D).
DOI: 10.5061/dryad.7dk08bc/3
title: AraC purification of cortical neuron culture and neuron survival after Tubastatin A and Aurora A Inhibitor I treatment

description: This file contains the data for fig 3. Sheet C contains the counts for cortical neurons (NeuN) and GFAP in AraC treated and non-treated cultures. Sheet E contains the data for the survival counts of Neurons injured by etoposide but treated with Tubastatin A in combination with or without AraC. Sheet F Contains the survival counts of neurons injured by etoposide but treated with Aurora A inhibitor.
DOI: 10.5061/dryad.7dk08bc/4
title: Measurements of primary cilia

description: This file contains the file 6 which includes the measurements of retinal ganglion cell primary cilia length and the counts of their nuclei.
DOI: 10.5061/dryad.7dk08bc/5
title: IFT88 shRNA effects on neuron primary cilia length and survival after axotomy

description: This file contains the data for fig 7. Sheet B,C contains the measurements of retinal ganglion cell primary cilia lengths after treatment with control or IFT88 shRNA. Sheet E contains survival counts of IFT88 treated RGCs after axotomy.
DOI: 10.5061/dryad.7dk08bc/6
title: The effects of various inhibitors and shRNAs targeting ciliary resorption on neuronal survival after axotomy

description: This file contains is the data for Fig 8. Sheet B contains the axotomized retinal ganglion cell survival quantification after treatment with Tubastatin A or Aurora Inhibitor A. Sheet D contains the axotomized retinal ganglion cell survival quantification after treatment with HEF1, NDE1, PLK1, Kif2a shRNAs.
DOI: 10.5061/dryad.852h5m8/1
title: Fish data

description: Data from common bullies (Gobiomorphus cotidianus) collected on February 12-13 2018 in lake Waipori system, South Island, New Zealand. NA indicates missing data.
DOI: 10.5061/dryad.852h5m8/2
title: InvertebrateData

description: Stable C-N isotope of invertebrates collected on February 12, 2018 in lake Waipori, South Island, New Zealand. NA ndicates missing data.
DOI: 10.5061/dryad.c3bm2j9/1
title: Files for simulating stochastic consumer-resource model

description: This ZIP archive contains R files for simulating a continuous-time stochastic consumer-resource model (2 consumers, 1 resource) for 9 parameter values and 2 population sizes. The model is simulated using Gillespie's stochastic simulation algorithm.
DOI: 10.5061/dryad.f1bn36c/1
title: Genotype

description: Microsatellite loci of Parantechinus apicalis
DOI: 10.5061/dryad.j6kn128/1
title: Climate Data

description: Location and climatic variables of each study site. Temperature and precipitation variables were estimated for 2012-2015 using the PRISM Climate Group Model, and day of year of first snowmelt was estimated using a regional regression (Petry et al. 2016).
DOI: 10.5061/dryad.j6kn128/2
title: Climate Data R Code

description: This is the R script for analyses of the relationship between elevation and multiple climatic variables as well as the principal component analysis of these climatic variables. This R script uses the ClimData.csv data file.
DOI: 10.5061/dryad.j6kn128/3
title: Aspen Canopy Surveys Data

description: The abundance of ants and aphids in aspen canopy surveys conducted in 2012.
DOI: 10.5061/dryad.j6kn128/4
title: Aspen Canopy Surveys R Code

description: This is the R script for analyses of aphid and ant abundance in aspen canopy surveys conducted in 2012. This script uses the AspenCanopySurveys.csv data file.
DOI: 10.5061/dryad.j6kn128/5
title: Trophic Level Manipulations Data

description: Data describing interspecific interactions involving host plants, aphids, natural enemies, and ants in two, three, and four trophic levels treatments imposed in 2015.
DOI: 10.5061/dryad.j6kn128/6
title: Trophic Level Manipulations R Code

description: This is the R script for analyses of whether aridity mediated aphid performance directly and indirectly by altering aphid multi-trophic species interactions. This script uses the TrophicLevelManipulations.csv data file.
DOI: 10.5061/dryad.j6kn128/7
title: Ant Abundance and Resource Use Data

description: The abundance of ants collected in pitfall traps in 2012 and 2015 as well as ant bait consumption in 2015.
DOI: 10.5061/dryad.js6j0pr/1
title: Migratory routes and survival parameters

description: Data files include:
1) A spreadsheet (Final Survival Table) that includes: Year identifier (1-7), animal ID (AID), start day interval, stop day interval, death (1 or 0), migration distance (MigDis), summer range (SumRange: 1, 2, or 3), high-use migration route (A, B, C, D, or E), mean ownership index, and route category (threeroute: Exterior, Interior, Low-use)

2) A shapefile (HighAndLowUseRoutes.shp) that contains high (GridCode 2) and low-use (GridCode 1) population-level migration routes depicted in Fig.1. 

3) A shapefile (MigrationLinesRisk.shp) that contains predicted survival probabilities on individual routes as depicted in Fig.3.
DOI: 10.5061/dryad.k02pq01/1
title: Womack_etal_2019_GenomeSizeDataTable_ForDryad

description: Data used and relevant references for Womack et al. 2019 publication in American Naturalist.
DOI: 10.5061/dryad.qk58nt2/5
title: sample_list

description: The list of samples.
DOI: 10.5061/dryad.qk58nt2/6
title: anonylist

description: The list that is used for identifying the linkable-anonymized files.
DOI: 10.5061/dryad.qk58nt2/7
title: WoS

description: The data of Web of Science literature survey.
DOI: 10.5061/dryad.s31rc70/3
title: PhyloBayes_tree_figure 2A
DOI: 10.5061/dryad.t384224/1
title: 20190618 SSR & Greenhouse & Gardens & climate datas
DOI: 10.5061/dryad.t6c3573/1
title: Bistort raw data

description: Demographic data for Polygonum viviparum collected at Niwot Ridge, CO from 2001-2011. szs0 = size at time t, szs1 = size at time t+1, bulbs0 = number of bulbils produced at time t. Details of data collection given in the supporting information.
DOI: 10.5061/dryad.t6c3573/2
title: Gorgonian raw data

description: Demographic data for Paramuricea clavata collected in the NW Mediterranean Sea from 1999-2004. Mortality = source of mortality, Site = site, Plot = plot, Year = annual transition from time t to time t+1, Ncol = colony id, Size = size at time t, Sizenext = size at time t+1, Survnext = dead (0) or alive (1) at time t+1. Details of data collection and reproduction given in supporting information.
DOI: 10.5061/dryad.t6c3573/3
title: Vulpicida raw data

description: Demographic data for Vulpicida pinastri collected in Kennicott Valley, AK from 2004-2009. Year = year at time t, site = site, t0 = size at time t, t1 = size at time t+1, repro = number of offspring assigned based on thallus circumference, survival = dead (0) or alive (1) at time t+1. Details of data collection and reproduction are given in supporting information.
DOI: 10.5061/dryad.t6c3573/4
title: Appendix 1

description: R script for analyses in Figure 2
DOI: 10.5061/dryad.t6c3573/5
title: Appendix 2

description: R script for analyses of coral
DOI: 10.5061/dryad.t6c3573/6
title: Appendix 3

description: R script to simultaneously fit the minimum, maximum, mean, and precision parameters of the beta approach using maximum likelihood
DOI: 10.5061/dryad.tq4qr23/2
title: Catchment Data

description: Environmental data for each EMBER catchment
DOI: 10.5061/dryad.tq4qr23/3
title: Plot data

description: Environmental data for individual EMBER study plots
DOI: 10.5061/dryad.1633c66/1
title: spring_data

description: Spring_data and Fall_data represent databases of used (denoted by column ‘case’ equal to 1) and available steps during spring and fall migration for mule deer in the Red Desert, San Juan Basin, Wyoming Range North, and Wyoming Range South of Wyoming, Idaho, New Mexico, and Colorado (USA) from approximately 2011-2018. The dataset is organized based on a step selection function framework, and can be analyzed using conditional logistic regression. These data were derived from relocations of GPS collared females. Program R was used to create the data file in July of 2019. Column headings exactly match the variables described in the associated publication in Ecology Letters. Please contact Jerod Merkle (jmerkle@uwyo.edu) at University of Wyoming for questions. If not available, please contact any of the authors listed in the associated publication in Ecology Letters.
DOI: 10.5061/dryad.1633c66/2
title: autumn_data

description: Spring_data and Fall_data represent databases of used (denoted by column ‘case’ equal to 1) and available steps during spring and fall migration for mule deer in the Red Desert, San Juan Basin, Wyoming Range North, and Wyoming Range South of Wyoming, Idaho, New Mexico, and Colorado (USA) from approximately 2011-2018. The dataset is organized based on a step selection function framework, and can be analyzed using conditional logistic regression. These data were derived from relocations of GPS collared females. Program R was used to create the data file in July of 2019. Column headings exactly match the variables described in the associated publication in Ecology Letters. Please contact Jerod Merkle (jmerkle@uwyo.edu) at University of Wyoming for questions. If not available, please contact any of the authors listed in the associated publication in Ecology Letters.
DOI: 10.5061/dryad.1g1hh58/1
title: Latitude crossing data of oriental honey buzzards

description: Dates and longitudes on which oriental honey buzzards crossed 30, 25, 20, 15, 10, 5 and 0˚N during autumn and spring migration. Columns represent: bird ID, latitude bird crossed, season, and date and longitude on which bird crossed focal latitude.
DOI: 10.5061/dryad.1g1hh58/2
title: Stopover data of oriental honey buzzards

description: Dates and locations of stopovers by oriental honey buzzards. Columns represent: bird ID, year, date of arrival, date of departure, number of days bird spent in stopover site, and latitude and longitude of centroid of stopover site.
DOI: 10.5061/dryad.1g1hh58/3
title: R scripts to estimate repeatabilities in oriental honey buzzards’ migration

description: This file contains R scripts to estimate repeatabilities of dates and longitudes on which oriental honey buzzards crossed 30, 25, 20, 15, 10, 5 and 0˚N, and repeatabilities of arrival and departure dates, and latitudes and longitudes of centroids of, oriental honey buzzards’ stopovers.
DOI: 10.5061/dryad.1s56s89/1
title: Muñoz-Lazo_S1_Dataset
DOI: 10.5061/dryad.31cf160/1
title: Sequence alignment (nuclear locus Agt1) for Orobanchaceae

description: Alignment of sequences from the nuclear low-copy marker Agt1 from Orobanchaceae and phylogenetic trees (maximum likelihood, Bayesian inference) in nexus format
DOI: 10.5061/dryad.31cf160/2
title: Sequence alignment (nuclear locus AT1G04780) for Orobanchaceae

description: Alignment of sequences from the nuclear low-copy marker AT1G04780 from Orobanchaceae and phylogenetic trees (maximum likelihood, Bayesian inference) in nexus format
DOI: 10.5061/dryad.31cf160/3
title: Sequence alignment (nuclear locus AT1G09680) for Orobanchaceae

description: Alignment of sequences from the nuclear low-copy marker AT1G09680 from Orobanchaceae and phylogenetic trees (maximum likelihood, Bayesian inference) in nexus format
DOI: 10.5061/dryad.31cf160/4
title: Sequence alignment (nuclear locus AT1G14610) for Orobanchaceae

description: Alignment of sequences from the nuclear low-copy marker AT1G14610 from Orobanchaceae and phylogenetic trees (maximum likelihood, Bayesian inference) in nexus format
DOI: 10.5061/dryad.31cf160/5
title: Sequence alignment (nuclear locus AT2G37230) for Orobanchaceae

description: Alignment of sequences from the nuclear low-copy marker AT2G37230 from Orobanchaceae and phylogenetic trees (maximum likelihood, Bayesian inference) in nexus format
DOI: 10.5061/dryad.4h6h6p5/1
title: Lions_data

description: Data for each individual lion
DOI: 10.5061/dryad.5002200/1
title: Thermal tolerance limits of ectotherms and endotherms acorss latitude, elevation, and associated environmental extreme temperature

description: This data file contains thermal tolerance limits for ectotherms and endotherms of the Globtherm Database, with some errors corrected and new methodological and environmental data associated with each limit. All temperatures are in °C. Associated with every thermal limit is the full taxonomy of the species (one single upper or lower thermal limit reported for every species), the thermal limit type (upper = max, lower = min), the temperature of the thermal limit, the metric used to assess thermal limit (lethal limits = LT50 or LT100, critical limits = ct, edges of the thermal neutral zone = TNZ), and the latitude, longitude, and elevation of collection points of individuals assayed. Also included are methodological variables associated with each thermal limit: the acclimation temperature prior to the assay, the starting temperature before temperature ramping (for critical limit studies only), the ramping rate (for critical limit studies only), and the exposure duration (for lethal limit studies only). Extreme episodic environmental temperature associated with each thermal limit is given, and the "acclimation offset" (see paper methods for source details of environmental temperatures and calculation of acclimation offset). Reference code for thermal limit and methodological data are included as "references".
DOI: 10.5061/dryad.56j8vq8/1
title: Pine_AllNatural_GCandTotemIndivs_GWAS_SNPs_June8th2019

description: Alleles of 31634 SNPs for 3500 lodgepole pine seedlings from 281 provenances across British Columbia and Alberta. Individual seedling IDs are the row names (all files in the same order), and column names are the SNP identities. SNP IDs for the array are the concatenation of the genomic contig name (gcontig) and the position of a SNP on the gcontig (pos), separated by a double underscore.
DOI: 10.5061/dryad.56j8vq8/2
title: Pine_AllNatural_GCandTotemIndivs_ControlSNPs_June8th2019

description: 4750 intergenic SNPs used to control for population structure in GPA and GEA analyses. individual seedling IDs are the row names (all files in the same order), and column names are the SNP identities. SNP IDs for the array are the concatenation of the genomic contig name (gcontig) and the position of a SNP on the gcontig (pos), separated by a double underscore.
DOI: 10.5061/dryad.56j8vq8/3
title: PlSeedlots

description: Geographic locations of the 281 lodgepole pine provenances. This file is structured as an input file for batch generation of climate data from ClimateNA.
DOI: 10.5061/dryad.56j8vq8/4
title: Pine_TotemField_AllNaturalSeedling_FinalPhenoData2014_Sept11th2018

description: Raw phenotypic data for the totem field (Vancouver) common garden trial. There are about 100 more seedlings in the raw data than the residual data because the residual data was subsetted to contain only the seedlings that genotyped successfully.