cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12056205.v1
title: Association between agronomic characters and hay quality of sweet potato branches

description: ABSTRACT From the perspective of the use of sweet potato branches for animal feed, there is a lack of information on the influence of this action on hay quality. Therefore, the objective was to study the association of sweet potato yield attributes with chemical-bromatological characteristics of hay. Ten sweet potato clones were evaluated, conducted in randomized blocks with five replications. Green and dry mass yield, dry mass content, leaf and stem ratio, total and commercial root yield, and chemical and bromatological characteristics of hay from the branches were determined. Phenotypic correlation and trial analysis between characteristics were estimated. Selection for the highest yield of roots and commercial roots may provide increased hay of crude protein, neutral detergent fiber and acid and total soluble sugars. However, selection for the highest root yield has a negative effect on the starch content of hay and deserves special attention from the breeder.
DOI: 10.6084/m9.figshare.12056157
title: Near-Infrared Photoimmunotherapy for Treatment of Colorectal Cancer in Orthotopic Nude-Mouse Models

description: <b>Background:</b> Photoimmunotherapy (PIT) employs the use of near-infrared (NIR) laser to activate an antibody conjugated to a NIR-activatable dye to promote cancer cell death. PIT has shown to be effective in a number of studies, however, there is no data on its use in colorectal cancers.<b>Methods:</b> Humanized anti-CEA antibody (M5A) was conjugated to NIR-activatable IRDye700DX (M5A-700). PIT was validated in vitro with a colon cancer cell line, using a laser intensity of either 4 J/cm<sup>2</sup>, 8 J/cm<sup>2</sup>, or 16 J/cm<sup>2</sup>. Orthotopic colon cancer mouse-models were established by surgical implantation of LS174T tumor fragments onto the cecum. M5A-700 was administered and PIT was performed 24 hours later using a 690 nm laser. Repeat PIT was performed after 7 days in one group. Control mice received laser treatment only.<b>Results:</b> In vitro PIT demonstrated tumor cell death in a laser intensity dose-dependent fashion. In orthotopic models, control mice demonstrated persistent tumor growth. Mice that underwent PIT one time had tumor growth arrested for one week. The group that received repeated PIT exposure had persistent inhibition of tumor growth.<b>Conclusion:</b> PIT arrests tumor growth in colon cancer orthotopic nude-mouse models. Repeated PIT arrests colon cancer growth for a longer period of time. PIT may be a useful therapy in the future as an adjunct to surgical resection or as primary therapy to suppress tumor progression.<br>This data represents raw tumor volume in each mouse and average tumor volumes per group.
DOI: 10.6084/m9.figshare.12056157.v1
title: Near-Infrared Photoimmunotherapy for Treatment of Colorectal Cancer in Orthotopic Nude-Mouse Models

description: <b>Background:</b> Photoimmunotherapy (PIT) employs the use of near-infrared (NIR) laser to activate an antibody conjugated to a NIR-activatable dye to promote cancer cell death. PIT has shown to be effective in a number of studies, however, there is no data on its use in colorectal cancers.<b>Methods:</b> Humanized anti-CEA antibody (M5A) was conjugated to NIR-activatable IRDye700DX (M5A-700). PIT was validated in vitro with a colon cancer cell line, using a laser intensity of either 4 J/cm<sup>2</sup>, 8 J/cm<sup>2</sup>, or 16 J/cm<sup>2</sup>. Orthotopic colon cancer mouse-models were established by surgical implantation of LS174T tumor fragments onto the cecum. M5A-700 was administered and PIT was performed 24 hours later using a 690 nm laser. Repeat PIT was performed after 7 days in one group. Control mice received laser treatment only.<b>Results:</b> In vitro PIT demonstrated tumor cell death in a laser intensity dose-dependent fashion. In orthotopic models, control mice demonstrated persistent tumor growth. Mice that underwent PIT one time had tumor growth arrested for one week. The group that received repeated PIT exposure had persistent inhibition of tumor growth.<b>Conclusion:</b> PIT arrests tumor growth in colon cancer orthotopic nude-mouse models. Repeated PIT arrests colon cancer growth for a longer period of time. PIT may be a useful therapy in the future as an adjunct to surgical resection or as primary therapy to suppress tumor progression.<br>This data represents raw tumor volume in each mouse and average tumor volumes per group.
DOI: 10.6084/m9.figshare.12056100
title: Indiana.Resultados.xlsx

description: Data obtained from the CHEST App during home visits by community health agents.
DOI: 10.6084/m9.figshare.12056052
title: NLDN location error detemined from towers

description: All the files can be opened in Matlab or Python using scipy.io.loadmat. Tower_info.mat contains information on 1451 towers selected in this study. After_upgrade.mat (before the 2013 upgrade) and before_upgrade.mat (after the 2013 upgrade) give the median location error, median location error in EW and median location in NS for each tower with identifed area with elevated event density .
DOI: 10.6084/m9.figshare.12056037
title: Supplementary files and figures associated with Henson et al. 2018 ISMEJ

description: Supplementary files and figures for Henson et al. 2018 ISME J: Cultivation and genomics of the first freshwater SAR11 (LD12) isolate
DOI: 10.6084/m9.figshare.12056037.v1
title: Supplementary files and figures associated with Henson et al. 2018 ISMEJ

description: Supplementary files and figures for Henson et al. 2018 ISME J: Cultivation and genomics of the first freshwater SAR11 (LD12) isolate
DOI: 10.6084/m9.figshare.12056001
title: Supplemental files and figures for Henson et al. 2016

description: Supplemental files and figures for the mSphere paper Henson et al. 2016 "Artificial seawater media facilitates cultivating members of the microbial majority from the Gulf of Mexico"
DOI: 10.6084/m9.figshare.12055989
title: Supplemental files and figures for Thrash et al. 2017

description: Supplemental files and figures associated with the Thrash et al. 2017 mBio manuscript Metabolic roles of uncultivated bacterioplankton lineages in the northern Gulf of Mexico “Dead Zone.”
DOI: 10.6084/m9.figshare.12055947
title: Supplementary Files for Henson et al. 2018 L&O

description: Supplemental files associated with Henson et al. 2018 <br>https://aslopubs.onlinelibrary.wiley.com/doi/full/10.1002/lno.10811
DOI: 10.6084/m9.figshare.12055947.v2
title: Supplementary Files for Henson et al. 2018 L&O

description: Supplemental files associated with Henson et al. 2018 <br>https://aslopubs.onlinelibrary.wiley.com/doi/full/10.1002/lno.10811
DOI: 10.6084/m9.figshare.12055914
title: Perceptual rules guiding sweet-taste discrimination in the honey bee

description: Excel Data Sets<br>
DOI: 10.6084/m9.figshare.12055911
title: Kone_OR_Data.zip

description: This is a master folder containing all relevant data to Kone et al. 2020.
DOI: 10.6084/m9.figshare.12055914.v1
title: Perceptual rules guiding sweet-taste discrimination in the honey bee

description: Excel Data Sets<br>
DOI: 10.6084/m9.figshare.12055947.v1
title: Untitled ItemSupplementary Files for Henson et al. 2018 L&O

description: Supplemental files associated with Henson et al. 2018 <br>https://aslopubs.onlinelibrary.wiley.com/doi/full/10.1002/lno.10811
DOI: 10.6084/m9.figshare.12055860
title: COVID-19-policy dataset

description: This dataset is a zip file of policy documents from Jan 1st - Mar 31st 2020 relating to the COVID-19 pandemic. <br>The documents are in PDF format and have an accompanying JSON file explaining their provenance: where they were collected from, their publication date, original location etc.<br>You can read more about it here:<br><br>https://blog.overton.io/?p=73
DOI: 10.6084/m9.figshare.12055830
title: Australian arbovirus database

description: A FASTA file containing sequences for arboviruses that have been found in Australia. Whole genome sequences were used in the database if publicly available, and segmented genomes were merged so that each arbovirus was represented by a single sequence.
DOI: 10.6084/m9.figshare.12055860.v1
title: CORD-19-policy dataset

description: This dataset is a zip file of policy documents from Jan 1st - Marc 31st 2020 relating to COVID-19 pandemic. <br>The documents are in PDF format and have an accompanying JSON file explaining their provenance: where they were collected from, their publication date, original location etc.<br>You can read more about it here:<br><br>https://blog.overton.io/?p=73
DOI: 10.6084/m9.figshare.12055911.v1
title: Kone_OR_Data.zip

description: This is a master folder containing all relevant data to Kone et al. 2020.
DOI: 10.6084/m9.figshare.12055794
title: Multi-Goal Prior Selection: A Way to Reconcile Bayesian and Classical Approaches for Random Effects Models

description: <b>The two-level normal hierarchical model has played an important role in statistical theory and applications. In this article, we first introduce a general adjusted maximum likelihood method for estimating the unknown variance component of the model and the associated empirical best linear unbiased predictor of the random effects. We then discuss a new idea for selecting prior for the hyperparameters. The prior, called a multi-goal prior, produces Bayesian solutions for hyperparmeters and random effects that match (in the higher order asymptotic sense) the corresponding classical solution in linear mixed model with respect to several properties. Moreover, we establish for the first time an analytical equivalence of the posterior variances under the proposed multi-goal prior and the corresponding parametric bootstrap second-order mean squared error estimates in the context of a random effects model.</b>
DOI: 10.6084/m9.figshare.12055797
title: Coronavirus COVID-19 Global Recovered cases

description: Latest update on April 3, 2020 (GMT+9) (Tokyo, Japan)
DOI: 10.6084/m9.figshare.12055743
title: Revisiting the minimum set cover, the maximal coverage models and a maximum benefit area selection model to make climate-change-concerned conservation plans effective (MPS file generators)

description: A set of tools that produce mps files of various conservation area prioritization models developed to handle climate change impacts over species range shifts.<br>Models are introduced in the article: <br>Alagador & Cerdeira. 2020. Revisiting the minimum set cover, the maximal coverage models and a maximum benefit area selection model to make climate-change-concerned conservation plans effective, <i>Methods in Ecology and Evolution.</i><br>
DOI: 10.6084/m9.figshare.12055743.v1
title: Revisiting the minimum set cover, the maximal coverage models and a maximum benefit area selection model to make climate-change-concerned conservation plans effective (MPS file generators)

description: A set of tools that produce mps files of various conservation area prioritization models developed to handle climate change impacts over species range shifts.<br>Models are introduced in the article: <br>Alagador & Cerdeira. 2020. Revisiting the minimum set cover, the maximal coverage models and a maximum benefit area selection model to make climate-change-concerned conservation plans effective, <i>Methods in Ecology and Evolution.</i><br>
DOI: 10.6084/m9.figshare.12055794.v2
title: Multi-Goal Prior Selection: A Way to Reconcile Bayesian and Classical Approaches for Random Effects Models

description: <b>The two-level normal hierarchical model has played an important role in statistical theory and applications. In this article, we first introduce a general adjusted maximum likelihood method for estimating the unknown variance component of the model and the associated empirical best linear unbiased predictor of the random effects. We then discuss a new idea for selecting prior for the hyperparameters. The prior, called a multi-goal prior, produces Bayesian solutions for hyperparmeters and random effects that match (in the higher order asymptotic sense) the corresponding classical solution in linear mixed model with respect to several properties. Moreover, we establish for the first time an analytical equivalence of the posterior variances under the proposed multi-goal prior and the corresponding parametric bootstrap second-order mean squared error estimates in the context of a random effects model.</b>
DOI: 10.6084/m9.figshare.12055728
title: Wenli Han.rar

description: 比较P harmacokinetic 小号的tudy ħ esperetin 一压脚提升ö 劳尔埃甲dministration在Ñ ormal和ħ yperuricemia ř 由UPLC-MS / MS ATS。
DOI: 10.6084/m9.figshare.12055797.v1
title: Coronavirus COVID-19 Global Recovered cases

description: Coronavirus COVID-19 Global Recovered cases by Country/Region/Sovereignty
DOI: 10.6084/m9.figshare.12055728.v1
title: Wenli Han.rar

description: 比较P harmacokinetic 小号的tudy ħ esperetin 一压脚提升ö 劳尔埃甲dministration在Ñ ormal和ħ yperuricemia ř 由UPLC-MS / MS ATS。
DOI: 10.6084/m9.figshare.12055797.v2
title: Coronavirus COVID-19 Global Recovered cases

description: Coronavirus COVID-19 Global Recovered cases by Country/Region/Sovereignty
DOI: 10.6084/m9.figshare.12055707
title: Wenli Han Table 1

description: <b>橙皮素在正常和高尿酸血症大鼠中的药代动力学参数（n = 8）</b>
DOI: 10.6084/m9.figshare.12055797.v4
title: Coronavirus COVID-19 Global Recovered cases

description: Latest update on April 3, 2020 (GMT+9) (Tokyo, Japan)
DOI: 10.6084/m9.figshare.12055707.v1
title: Wenli Han Table 1

description: <b>橙皮素在正常和高尿酸血症大鼠中的药代动力学参数（n = 8）</b>
DOI: 10.6084/m9.figshare.12055797.v3
title: Coronavirus COVID-19 Global Recovered cases

description: Latest update on April 3, 2020 (GMT+9) (Tokyo, Japan)
DOI: 10.6084/m9.figshare.12055500
title: Open Access at National Level datasets

description: Two datasets of outputs and channels<br>The outputs dataset consists of 48,177 unique peer-reviewed outputs published in 2016-2017 by researchers affiliated with 14 Finnish universities. It is based on data from the VIRTA publication information service and made available by CSC - IT Center for Science here: https://wiki.eduuni.fi/display/cscvirtajtp/Vuositasoiset+Excel-tiedostot <br>The channels dataset consists of 10,342 publication channels (journals/series and book publishers) used by researchers affiliated with 14 Finnish universities. It is based on Publication Forum authority list of publication channels available here: https://www.tsv.fi/julkaisufoorumi/haku.php?lang=en
DOI: 10.6084/m9.figshare.12055503
title: Variation among biosynthetic gene clusters, secondary metabolite profiles, and cards of virulence across Aspergillus species

description: <i>Aspergillus fumigatus </i>is a major human pathogen. In contrast, <i>Aspergillus</i> <i>fischeri</i> and the recently described <i>Aspergillus</i> <i>oerlinghausenensis</i>, the two species most closely related to <i>A. fumigatus</i>, are not known to be pathogenic. Some of the genetic determinants of virulence (or “cards of virulence”) that <i>A. fumigatus </i>possesses are secondary metabolites that impair the host immune system, protect from host immune cell attacks, or acquire key nutrients. To examine whether secondary metabolism-associated cards of virulence vary between these species, we conducted extensive genomic and secondary metabolite profiling analyses of multiple <i>A. fumigatus</i>, one <i>A. oerlinghausenensis</i>, and multiple<i> A. fischeri</i> strains. We identified two cards of virulence (gliotoxin and fumitremorgin) shared by all three species and three cards of virulence (trypacidin, pseurotin, and fumagillin) that are variable. For example, we found that all species and strains examined biosynthesized gliotoxin, which is known to contribute to virulence, consistent with the conservation of the gliotoxin biosynthetic gene cluster (BGC) across genomes. For other secondary metabolites, such as fumitremorgin, a modulator of host biology, we found that all species produced the metabolite but that there was strain heterogeneity in its production within species. Finally, species differed in their biosynthesis of fumagillin and pseurotin, both contributors to host tissue damage during invasive aspergillosis. <i>A. fumigatus</i> biosynthesized fumagillin and pseurotin, while <i>A. oerlinghausenensis</i> biosynthesized fumagillin and <i>A. fischeri</i> biosynthesized neither. These biochemical differences were reflected in sequence divergence of the intertwined fumagillin/pseurotin BGCs across genomes. These results delineate the similarities and differences in secondary metabolism-associated cards of virulence between a major fungal pathogen and its nonpathogenic closest relatives, shedding light onto the genetic and phenotypic changes associated with the evolution of fungal pathogenicity.
DOI: 10.6084/m9.figshare.12055500.v1
title: Open Access at National Level datasets

description: Two datasets of outputs and channels<br>The outputs dataset consists of 48,177 unique peer-reviewed outputs published in 2016-2017 by researchers affiliated with 14 Finnish universities. It is based on data from the VIRTA publication information service and made available by CSC - IT Center for Science here: https://wiki.eduuni.fi/display/cscvirtajtp/Vuositasoiset+Excel-tiedostot <br>The channels dataset consists of 10,342 publication channels (journals/series and book publishers) used by researchers affiliated with 14 Finnish universities. It is based on Publication Forum authority list of publication channels available here: https://www.tsv.fi/julkaisufoorumi/haku.php?lang=en
DOI: 10.6084/m9.figshare.12055494
title: U.S. Counties represents the counties of the United States in the 50 states, the District of Columbia, and Puerto Rico.

description: U.S. Counties represents the counties of the United States in the 50 states, the District of Columbia, and Puerto Rico.
DOI: 10.6084/m9.figshare.12055497
title: Panov et al 2020 JGR sim data

description: Simulation data used to plot Figures 1, 2, 5, 6, 7 in the paper and Figure F1, F2 in the supplementary material.
DOI: 10.6084/m9.figshare.12055497.v1
title: Panov et al 2020 JGR sim data

description: Simulation data used to plot Figures 1, 2, 5, 6, 7 in the paper and Figure F1, F2 in the supplementary material.
DOI: 10.6084/m9.figshare.12055503.v1
title: Variation among biosynthetic gene clusters, secondary metabolite profiles, and cards of virulence across Aspergillus species

description: <i>Aspergillus fumigatus </i>is a major human pathogen. In contrast, <i>Aspergillus</i> <i>fischeri</i> and the recently described <i>Aspergillus</i> <i>oerlinghausenensis</i>, the two species most closely related to <i>A. fumigatus</i>, are not known to be pathogenic. Some of the genetic determinants of virulence (or “cards of virulence”) that <i>A. fumigatus </i>possesses are secondary metabolites that impair the host immune system, protect from host immune cell attacks, or acquire key nutrients. To examine whether secondary metabolism-associated cards of virulence vary between these species, we conducted extensive genomic and secondary metabolite profiling analyses of multiple <i>A. fumigatus</i>, one <i>A. oerlinghausenensis</i>, and multiple<i> A. fischeri</i> strains. We identified two cards of virulence (gliotoxin and fumitremorgin) shared by all three species and three cards of virulence (trypacidin, pseurotin, and fumagillin) that are variable. For example, we found that all species and strains examined biosynthesized gliotoxin, which is known to contribute to virulence, consistent with the conservation of the gliotoxin biosynthetic gene cluster (BGC) across genomes. For other secondary metabolites, such as fumitremorgin, a modulator of host biology, we found that all species produced the metabolite but that there was strain heterogeneity in its production within species. Finally, species differed in their biosynthesis of fumagillin and pseurotin, both contributors to host tissue damage during invasive aspergillosis. <i>A. fumigatus</i> biosynthesized fumagillin and pseurotin, while <i>A. oerlinghausenensis</i> biosynthesized fumagillin and <i>A. fischeri</i> biosynthesized neither. These biochemical differences were reflected in sequence divergence of the intertwined fumagillin/pseurotin BGCs across genomes. These results delineate the similarities and differences in secondary metabolism-associated cards of virulence between a major fungal pathogen and its nonpathogenic closest relatives, shedding light onto the genetic and phenotypic changes associated with the evolution of fungal pathogenicity.
DOI: 10.6084/m9.figshare.12055296
title: Region 2 model data

description: Region 2 model data (SE)
DOI: 10.6084/m9.figshare.12055503.v2
title: Variation among biosynthetic gene clusters, secondary metabolite profiles, and cards of virulence across Aspergillus species

description: <i>Aspergillus fumigatus </i>is a major human pathogen. In contrast, <i>Aspergillus</i> <i>fischeri</i> and the recently described <i>Aspergillus</i> <i>oerlinghausenensis</i>, the two species most closely related to <i>A. fumigatus</i>, are not known to be pathogenic. Some of the genetic determinants of virulence (or “cards of virulence”) that <i>A. fumigatus </i>possesses are secondary metabolites that impair the host immune system, protect from host immune cell attacks, or acquire key nutrients. To examine whether secondary metabolism-associated cards of virulence vary between these species, we conducted extensive genomic and secondary metabolite profiling analyses of multiple <i>A. fumigatus</i>, one <i>A. oerlinghausenensis</i>, and multiple<i> A. fischeri</i> strains. We identified two cards of virulence (gliotoxin and fumitremorgin) shared by all three species and three cards of virulence (trypacidin, pseurotin, and fumagillin) that are variable. For example, we found that all species and strains examined biosynthesized gliotoxin, which is known to contribute to virulence, consistent with the conservation of the gliotoxin biosynthetic gene cluster (BGC) across genomes. For other secondary metabolites, such as fumitremorgin, a modulator of host biology, we found that all species produced the metabolite but that there was strain heterogeneity in its production within species. Finally, species differed in their biosynthesis of fumagillin and pseurotin, both contributors to host tissue damage during invasive aspergillosis. <i>A. fumigatus</i> biosynthesized fumagillin and pseurotin, while <i>A. oerlinghausenensis</i> biosynthesized fumagillin and <i>A. fischeri</i> biosynthesized neither. These biochemical differences were reflected in sequence divergence of the intertwined fumagillin/pseurotin BGCs across genomes. These results delineate the similarities and differences in secondary metabolism-associated cards of virulence between a major fungal pathogen and its nonpathogenic closest relatives, shedding light onto the genetic and phenotypic changes associated with the evolution of fungal pathogenicity.
DOI: 10.6084/m9.figshare.12055293
title: Region 5 model data

description: Region 5 (HP) model data
DOI: 10.6084/m9.figshare.12055296.v1
title: Region 2 model data

description: Region 2 model data (SE)
DOI: 10.6084/m9.figshare.12055287
title: Region 3 model data

description: Region 3 model data (SW)
DOI: 10.6084/m9.figshare.12055290
title: Region 4 model data

description: Region 4 (WC) model data
DOI: 10.6084/m9.figshare.12055293.v1
title: Region 5 model data

description: Region 5 (HP) model data
DOI: 10.6084/m9.figshare.12055290.v1
title: Region 4 model data

description: Region 4 (WC) model data
DOI: 10.6084/m9.figshare.12055287.v1
title: Region 3 model data

description: Region 3 model data (SW)