cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20375850.v11
title: Dataset Distinct impacts of food restriction and warming on life history traits affect population fitness in vertebrate ectotherms

description: This file contains the data and scripts used in the article "Distinct impacts of food restriction and warming on life history traits affect population fitness in vertebrate ectotherms". <br> Growth, fecundity and survival data are available in df_growth.csv, df_fecundity.csv and df_survival.csv. In these files, "age" is the age of the fish, "temp" is the rearing temperature (20 °C or 30 °C), "food" is the feeding modality (ad libitum ad or restriction res), "condition" is the combination of temperature and resource modalities, "length_mm" is the fish size, fecundity is the number of eggs and "event" is the survival modality (1 = dead, 0 = alive). The scripts 01_growth.R, 02_fecundity and 03_survival.R analyze the growth, fecundity and survival curves. The 01_growth.R script uses the model written in bayesian_model.txt. <br> Integral Projection Models are written in script 04_IPM.R which uses the data cfs_bayes.Rdata (bayesian model posterior distribution), df_reproduction.csv, df_survival_probabilities.csv (Kaplan Meier estimate) and df_size_newborn.csv (data from our laboratory on the size of the newborns). IPMs results are compiled in IPM_model_outputs.csv. The script 05_IPM_sensitivity.R is used to perform sensitivity analysis. The results of these analyses are compiled in IPM_model_sensitivity.csv.
DOI: 10.17632/y48yp2tx9p.1
title: Data for: TCDD-induced allosteric perturbation of the AhR:ARNT bind-ing to DNA

description: Homology model and Molecular dynamics simulations for the AhR:ARNT:DRE complex in presence or absence of the TCDD ligand
DOI: 10.17632/mcwkzrdt9b.1
title: Structural insights into human co-transcriptional capping

description: Co-transcriptional capping of the nascent pre-mRNA 5’ end prevents degradation of RNA polymerase (Pol) II transcripts and suppresses the innate immune response. Here we provide mechanistic insights into the three major steps of human co-transcriptional pre-mRNA capping based on six different cryo-EM structures. The human mRNA capping enzyme, RNGTT first docks to the Pol II stalk to position its triphosphatase domain near the RNA exit site. The capping enzyme then moves on the Pol II surface and its guanylyltransferase receives the pre-mRNA 5’-diphosphate end. Addition of a GMP moiety can occur when the RNA is ~22 nucleotides long, sufficient to reach the active site of the guanylyltransferase. For subsequent cap(1) methylation, the methyltransferase CMTR1 binds the Pol II stalk, and can receive RNA after it is grown to ~29 nucleotides in length. The observed rearrangements of capping factors on the Pol II surface may be triggered by the completion of catalytic reaction steps and are accommodated by domain movements in the elongation factor DSIF.
DOI: 10.17632/ch62xyg365.1
title: Gifting

description: Pretest and 5 studies data
DOI: 10.17632/7hychkj9zs.1
title: MsPHep: An Online Application for Low-Molecular-Weight Heparin Rapid Characterization Based on Mass Spectrometry

description: Test data for Enoxaparin standard using HILIC-MS and SEC-MS methods, and Parameters setting of DeconTools
DOI: 10.17632/trthm858ny.1
title: Blasting Quarry Operations: Land Use Compatibility Issues and Potential Property Value Impacts

description: Aggregate resources are essential for road and building construction. In 2019, the US domestic production reached 1.53 billion tons of crushed stone valued at $18.7 billion produced by an estimated 1,430 companies operating 3,440 quarries, according to the U.S. Geological Survey (USGS) Mineral Commodity Summaries. But, it is also recognized that a quarry blasting below the water table is one of the most noxious, toxic and destructive uses of land, with no reasonable prospect of post-extraction-rehabilitation. If permitted and established in the wrong geographic location, a blasting quarry operation can result in significant deleterious impacts on the environment and local inhabitants and can disrupt short and long-term land use planning objectives. Because a quarry can remain operational for 100+ years, impacting five or more generations; quarries have the potential to cause permanent environmental degradation, destabilize communities, damage, sterilize or diminish the use and enjoyment of residential and non-residential properties, and reduce property values. Blasting is the preferred method of extracting rock in a quarry operation, the consequences of which can lead to environmental and property damage, and to injury or death of human and non-human life. In North America, licensing and operational oversight of a pit or quarry are primarily controlled by the individual states, territories and provinces, and address matters of compliance, while issues related to land use planning and zoning are entirely within the jurisdiction of the local municipalities, counties or regions. Accordingly, this research paper seeks to inform land use planners of the importance of protecting the environment and its inhabitants from the adverse effects, including the diminution in property values, associated with aggregate extraction operations generally and blasting quarries specifically, through the use of permanent onsite setbacks and offsite separation distances to avoid land use incompatibility and sensitive land uses.
DOI: 10.17632/ns9f6mf8jp.1
title: TORS vs Open Oral cancer

description: The original data for comparison of TORS and open surgery for oral cancer.
DOI: 10.17632/9v692scj6g.1
title: Comprehensive Dissection of Human Glioblastoma Inter- and Intra-Tumoral Heterogeneity and Vulnerability with an Integrative strategy of organoid modeling and single clone RNA-sequencing

description: This data contains the processed data of GBO and GHO as a whole and of the single clones genome and transcriptome isolated from GHO.
DOI: 10.17632/kmbctyg57s.1
title: Self-regulated learning and university students' digital behaviors in an online L2 learning environment examined using learning analytics

description: The present study investigates L2 learners’ digital behaviors, using 124 university students who enrolled in a blended learning course. University participants’ online learning behaviors were investigated through learning analytics. Learning analytics is a research method which collects learners’ log data in order to analyze their online behaviors. The findings of this research may be useful when designing and managing an online L2 learning program.
DOI: 10.17632/m268kksxpw.1
title: shear angle and deformation depth data

description: The  shear angle of shear zones decreases continously with descreasing deformation depth. These shear angle and deformation depth data are  collected from the Nujiang Gorge, Taili Beach, and Altai Orogen of China.
DOI: 10.17632/w8bx626k7m.1
title: Data set for Humanoid Robots: Modeling and Control by Dragomir N. Nenchev, Atsushi Konno and Teppei Tsujita

description: The folders named Chapter 2 through Chapter 7 contain the videos cited in the respective chapters of the text. The file names are assigned in the following way: chapter.section- sequential number [citation number].mp4. The Appendix folder contains the two files cited in the Appendix of the book.
DOI: 10.17632/zhnr8zvskb.1
title: Supplementary material-CTCL-FISH

description: Dataset related to article
DOI: 10.6084/m9.figshare.23044853
title: Chamaerops humilis chorology

description: Distribution map of <em>Chamaerops humilis</em>.<br> <br> <br> These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature. The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn"). Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com). <br> <br> Please cite as: Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br> <br> Additional information and used references are on 'supplementary materials' document: https://doi.org/10.6084/m9.figshare.5091901 <br> <br> <br> Chorological maps are part of the "European Atlas of Forest Tree Species" project: https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.5281/zenodo.7948133
title: 2mt Air Temperature, VPD & PAR Dataset Europe (500mt) 2020

description: 2mt Air Temperature, VPD & PAR Dataset Europe (500mt) 2020 Source: ECMWF ERA5 Year: 2020 Region: Europe Temporal Scale: 8 Days Spatial Resolution: 500 meter
DOI: 10.5281/zenodo.7948134
title: 2mt Air Temperature, VPD & PAR Dataset Europe (500mt) 2020

description: 2mt Air Temperature, VPD & PAR Dataset Europe (500mt) 2020 Source: ECMWF ERA5 Year: 2020 Region: Europe Temporal Scale: 8 Days Spatial Resolution: 500 meter
DOI: 10.5281/zenodo.7944477
title: ECMWF Global 8 Day Variables (2mt Air Temp, 2mt Dew Point Temp, Solar Radiation) 2020

description: Input files (2mt Air Temp, 2mt Dew Point Temp, Solar Radiation) are from the year 2020 over the Globe. Source: ECMWF ERA5 Year: 2020 Region: Globe Temporal Scale: 8 Days Spatial Resolution: 9-11km approx
DOI: 10.5281/zenodo.7944478
title: ECMWF Global 8 Day Variables (2mt Air Temp, 2mt Dew Point Temp, Solar Radiation) 2020

description: Input files (2mt Air Temp, 2mt Dew Point Temp, Solar Radiation) are from the year 2020 over the Globe. Source: ECMWF ERA5 Year: 2020 Region: Globe Temporal Scale: 8 Days Spatial Resolution: 9-11km approx
DOI: 10.57841/casdc.0000709
title: TRM14B3000和TRM12B3000-SDMK模块实验数据
DOI: 10.57841/casdc.0000710
title: TRM12B3000-SZXX模块实验数据
DOI: 10.57841/casdc.0000711
title: TMM-FPGA模块实验数据
DOI: 10.57841/casdc.0000712
title: TMM-SCA模块实验数据
DOI: 10.6084/m9.figshare.23045249
title: Supplementary Material for: The Single-Matrix Digit Cancellation Test (SMDCT), a screener for selective attention deficits: standardization in an Italian population sample and clinical usability in acute stroke patients

description: Introduction. This study aimed at validating and providing Italian norms for the Single-Matrix Digit Cancellation Test (SMDCT), a cancellation task to screen for selective attention deficits, as well as providing clinical usability evidence for it in acute stroke patients. Methods. The SMDCT stimulus is a specular, 4-quadrant, horizontally oriented matrix, across which target distribution is homogeneous. Both Accuracy (-A) and Time (-T) outcomes were computed. N=263 healthy participants (HPs) and N=76 acute stroke patients were recruited. N=108 HPs also underwent the Mini-Mental State Examination, Frontal Assessment Battery (FAB) and Trail-Making Test (TMT), whilst patients were further assessed via the Mental Performance in Acute Stroke (MEPS). Regression-based norms were derived (Equivalent Scores). Construct and factorial validity, as well as case-control discrimination, were tested. Results. The matrix was underpinned by a two-component structure reflecting left and right hits. The SMDCT-T and -A were associated with TMT and FAB scores, respectively. Education predicted the SMDCT-A/-T, whereas age the SMDCT-T only. In patients, the SMDCT converged with the MEPS, also accurately discriminating them from HPs. An index of right-left difference differentiated right- from left-damaged patients. Conclusions. The SMDCT is a valid and normed screener for selective attention deficits, encompassing measures of both accuracy and time, whose adoption is encouraged in acute stroke patients. Relatedly, the horizontal disposition of its matrix does allow for the qualitative report of either leftwards of rightwards biases due to underlying visual or attentional-representational deficits in this population.
DOI: 10.5281/zenodo.7956207
title: AuTexTification Dataset (Full data)

description: Datasets of the AuTexTification shared task at IberLEF 2023. This task aims to boost research on the detection of text generated automatically by text generation models. Participants must develop models that exploit clues about linguistic form and meaning to distinguish automatically generated text from human text. This dataset includes the training and test splits with labels for all the subtasks and languages. Additionally, each file includes the domain, the model and the prompt used to generate each sample. The model label mapping for subtask 2 is: {"A": "bloom-1b7", "B": "bloom-3b", "C": "bloom-7b1", "D": "babbage", "E": "curie", "F": "text-davinci-003"}
DOI: 10.5281/zenodo.7956206
title: AuTexTification Dataset (Full data)

description: Datasets of the AuTexTification shared task at IberLEF 2023. This task aims to boost research on the detection of text generated automatically by text generation models. Participants must develop models that exploit clues about linguistic form and meaning to distinguish automatically generated text from human text. This dataset includes the training and test splits with labels for all the subtasks and languages. Additionally, each file includes the domain, the model and the prompt used to generate each sample. The model label mapping for subtask 2 is: {"A": "bloom-1b7", "B": "bloom-3b", "C": "bloom-7b1", "D": "babbage", "E": "curie", "F": "text-davinci-003"}
DOI: 10.5519/1j7weade
title: Thysanoptera Slide Collection

description: The Thysanoptera collection comprises the records of all the slide-mounted Thysanoptera material at the Natural History Museum, London at the time of the project completion (April 2022). This includes the main collection and discrete collections of [Richard Siddoway Bagnall](https://www.wikidata.org/wiki/Q7329042) and [Laurence Mound](https://www.wikidata.org/wiki/Q21045173). Each specimen record has been published with an image capturing both the specimen and its associated labels and creating an inventory record with a unique identifier (Data Matrix barcode), taxon information, type status, country level collection locality. Additional images were taken to capture any information on the reverse of the slides and/or the paper envelopes that house the slides. The data resource generated by the project is available using the link. Please search for the relevant taxa as this dataset if part of a larger project covering a range of Orders and Superfamilies. This collection was digitised as part of the Museum's Digital Collections Programme.
DOI: 10.6084/m9.figshare.23045282
title: Relationship of expression of P53 and Ki-67 with clinicopathologic features of colorectal cancer

description: <strong>Objective:</strong> To discuss the relation of P53, Ki-67 expression and clinicopathologic factors with lymph node metastasis (LNM) in colorectal cancer (CRC) and provide a reference for precision medicine and targeted therapy of CRC. <strong>Methods:</strong> Mainly, the relationship of Ki-67 and P53 expression and clinicopathological factors with LNM in CRC was analyzed. Specifically, the effect of clinicopathological factors and Ki-67 and P53 expression on LNM in CRC patients was analyzed by logistic multivariate regression. <strong>Results:</strong> The positive expression of Ki-67 and P53 was significantly different in depth of tumor invasion, tumor differentiation, nerve invasion, tumor thrombi and LNM; positive P53 expression was significantly different histologically. Besides, CRC patients were more likely to develop LNM if they aged more than 60 years, had adenocarcinoma histology, accompanied by T3 tumor differentiation and depth of invasion, and developed tumor thrombi. Actually, logistic multivariate regression analysis suggested that depth of invasion of the intestinal wall, tumor thrombi, differentiation, and positive expression of Ki-67 and P53 were risk factors for LNM in CRC patients. <strong>Conclusion:</strong> Invasion depth of the intestinal wall, tumor thrombi, differentiation, and expression levels of P53 and Ki-67 are important factors for LNM.
DOI: 10.6084/m9.figshare.23045282.v1
title: Relationship of expression of P53 and Ki-67 with clinicopathologic features of colorectal cancer

description: <strong>Objective:</strong> To discuss the relation of P53, Ki-67 expression and clinicopathologic factors with lymph node metastasis (LNM) in colorectal cancer (CRC) and provide a reference for precision medicine and targeted therapy of CRC. <strong>Methods:</strong> Mainly, the relationship of Ki-67 and P53 expression and clinicopathological factors with LNM in CRC was analyzed. Specifically, the effect of clinicopathological factors and Ki-67 and P53 expression on LNM in CRC patients was analyzed by logistic multivariate regression. <strong>Results:</strong> The positive expression of Ki-67 and P53 was significantly different in depth of tumor invasion, tumor differentiation, nerve invasion, tumor thrombi and LNM; positive P53 expression was significantly different histologically. Besides, CRC patients were more likely to develop LNM if they aged more than 60 years, had adenocarcinoma histology, accompanied by T3 tumor differentiation and depth of invasion, and developed tumor thrombi. Actually, logistic multivariate regression analysis suggested that depth of invasion of the intestinal wall, tumor thrombi, differentiation, and positive expression of Ki-67 and P53 were risk factors for LNM in CRC patients. <strong>Conclusion:</strong> Invasion depth of the intestinal wall, tumor thrombi, differentiation, and expression levels of P53 and Ki-67 are important factors for LNM.
DOI: 10.6084/m9.figshare.23045285
title: Statistics source data

description: Statistics source data in Excel format.
DOI: 10.6084/m9.figshare.23045285.v1
title: Statistics source data

description: Statistics source data in Excel format.
DOI: 10.5063/f1c24twn
title: Dataset on the effect of soil disturbance on ant-diaspore interactions in a tropical savanna

description: This dataset contains information involving interactions between ant species and artificial diaspores. The diaspores were offered in distinct points that were arranged inside different areas (transects) in distinct conditions of soil disturbance (preserved vs. degraded). It also contains data on the frequency, distance, and time of diaspore removal.
DOI: 10.5281/zenodo.7651064
title: Supplemental data for: Increased mutation and gene conversion within human segmental duplications

description: Data used for figure generation and analysis in: <strong>Increased mutation and gene conversion within human segmental duplications</strong> new-assemblies.zip contains all the new assemblies added in this work beyond the HPRC assemblies (Clint PTR, CHM1, HG00514, NA12878, HG03125). All other assemblies used in this analysis are available through the HPRC: assembly_index/Year1_assemblies_v2_genbank.index. all-sample.vcf is a vcf file with all the variant calls used in this analysis. alignments.zip contains all the syntenic alignments used for analysis. data.zip contains annotation data and other information used in analysis and figure making. Code used in figure making and analysis is on GitHub. Snakemake pipelines used in the analysis are also on GitHub: Assembly alignment and IGC calling: https://github.com/mrvollger/asm-to-reference-alignment Variant calling from assembly alignments: https://github.com/mrvollger/sd-divergence Analysis of the triplet content of SNVs: https://github.com/mrvollger/mutyper_workflow
DOI: 10.5281/zenodo.7749643
title: Data products associated with: Tamburo, Withers, Dalba, Moore, and Koskinen (2023) Cassini radio occultation observations of Saturn's ionosphere: Electron density profiles from 2005 to 2013, Journal of Geophysical Research, doi:10.1029/2023JA031310

description: These data products are associated with Tamburo, Withers, Dalba, Moore, and Koskinen (2023) Cassini radio occultation observations of Saturn’s ionosphere: Electron density profiles from 2005 to 2013, Journal of Geophysical Research, doi:10.1029/2023JA031310. At the time of writing, this manuscript is under review. In the future, these data products will be submitted for archiving at the NASA Planetary Data System (PDS).
DOI: 10.18154/rwth-2020-03939
title: Towards a strong-sense validation benchmark database for numerical ladle flow models - Database

description: In numerical computation of ladle metallurgy, multiphase models are essential. Still, these models are afflicted with great uncertainty, making a validation with experimental data mandatory. Validation experiments distinguish fundamentally from deterministic experiments because emphasis is on a complete documentation of all boundary conditions and a detailed uncertainty assessment. For this work, the experimental design for a comprehensive accuracy assessment of numerical models and reported quantities were jointly determined with international numerical experts. The framework comprises a plume analysis and flow measurements in the single- and multiphase region in a water model with defined conditions. All influencing factors are extensively documented and their contribution to the overall data uncertainty is quantified. Detailed data is made publicly available in a validation benchmark database for the isothermal multiphase flow in the ladle. A first draft of a standardized validation procedure including a single number validation score is proposed. With the data provided, the accuracy of numerical models can be quantified more accurately and comparably, thus advancing its further development. It also lays the foundations for a standardization of the validation process, which can lead to greater acceptance of numerical results.
DOI: 10.6084/m9.figshare.21084829.v19
title: List of native-alien populations in South Africa.csv

description: Native-alien population is defined as a population that is within a country to which the species is native and founded by individuals moved by direct human agency (or substantial indirect human agency) over a biogeographical barrier to an area beyond the species’ native range (Nelufule et al. 2022). <br> Reference Nelufule T, Robertson MP, Wilson JRU, Faulkner KT (2022) Native-alien populations—an apparent oxymoron that requires specific conservation attention. <em>NeoBiota</em> 74: 57–74, https://doi.org/10.3897/neobiota.74.81671
DOI: 10.15151/esrf-es-1209797875
title: Plate samples rotations for SAXS measurements of anisotropic precipitates in aluminium alloys

description: We want to assess the possibility of overcoming the strongly anisotropic SAXS signal from non-spherical precipitates in aluminium alloys by rotating the thin samples. For this we need to test several possibilities of integrating the different orientations.