cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh2913496.08fu
title: SH2913496.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2913497.08fu
title: SH2913497.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.bthkmp
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podochilus appendiculatus J.J.Sm."
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079581-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78kppq
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potentilla monanthes Lindl. ex Lehm."
 ]
}

 The dataset includes 83 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079582-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jz5be9
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polystachya anthoceros la Croix & P.J.Cribb"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079584-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwjwhs
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina nandanensis (S.X.Huang)"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079583-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b9j3yu
title: Occurrence Download

description: A dataset containing 85088 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ateles paniscus (Linnaeus, 1758), Sapajus apella (Linnaeus, 1758), Alouatta macconnelli Elliot, 1910, Dasyprocta leporina (Linnaeus, 1758), Chiropotes sagulatus (Traill, 1821), Saguinus martinsi (Thomas, 1912), Myoprocta acouchy (Erxleben, 1777), Choloepus didactylus (Linnaeus, 1758), Saimiri sciureus (Linnaeus, 1758), Mazama americana (Erxleben, 1777), Pithecia pithecia (Linnaeus, 1766), Puma concolor (Linnaeus, 1771), Leopardus wiedii (Schinz, 1821), Tamandua tetradactyla (Linnaeus, 1758), Nasua nasua (Linnaeus, 1766), Bradypus variegatus Schinz, 1825, Tapirus terrestris (Linnaeus, 1758), Myrmecophaga tridactyla Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 85088 records from 461 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079525-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yxgxxu
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podochilus australiensis (F.M.Bailey) Schltr."
 ]
}

 The dataset includes 53 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079586-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6fxtr9
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina napoensis (Z.Yu Li) Mich.Möller & A.Weber"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079587-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kew8xu
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potentilla mongolica Krasch."
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079589-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.udpqhy
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polystachya armeniaca la Croix & P.J.Cribb"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079588-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhjjnr
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podochilus banaensis Ormerod"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079590-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mgb3yv
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polystachya asper P.J.Cribb & Podz."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079592-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47qjhs
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina ningmingensis (Yan Liu & W.H.Wu) W.B.Xu & K.F.Chung"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079591-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vz2jzc
title: Occurrence Download

description: A dataset containing 13373 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potentilla montana Brot."
 ]
}

 The dataset includes 13373 records from 464 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079593-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sfvrz5
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podochilus bancanus J.J.Sm."
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079594-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8002366
title: BBC News
DOI: 10.15468/dl.7jrjqz
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polystachya aurantiaca Schltr."
 ]
}

 The dataset includes 19 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079595-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvgtm3
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina niveolanosa F.Wen, S.Li & W.C.Chou"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079596-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6b7ug3
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potentilla montenegrina Pant."
 ]
}

 The dataset includes 59 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079598-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ep4hbj
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podochilus bicaudatus Schltr."
 ]
}

 The dataset includes 17 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079599-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qua9tg
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polystachya bamendae Szlach., Baranow & Mytnik"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079600-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.24zvut
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina obtusidentata (W.T.Wang) Mich.Möller & A.Weber"
 ]
}

 The dataset includes 16 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079601-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ff2rqu
title: Occurrence Download

description: A dataset containing 7873 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ipomoea hederacea Jacq."
 ]
}

 The dataset includes 7873 records from 303 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079597-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nwxmbp
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potentilla morrisonensis Hayata"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079602-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4w7utz
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podochilus bilabiatus J.J.Sm."
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079603-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u2yjqn
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polystachya bancoensis Burg"
 ]
}

 The dataset includes 33 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079605-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjtjqg
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina ophiopogoides (D.Fang & W.T.Wang) Yin Z.Wang"
 ]
}

 The dataset includes 28 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079606-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sj2wew
title: Occurrence Download

description: A dataset containing 806 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potentilla multicaulis Bunge"
 ]
}

 The dataset includes 806 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079607-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7m4cpd
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podochilus cucullatus J.J.Sm."
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079608-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8393661
title: GSA-GxE: A Framework of Global Sensitivity Analysis of Maize Coupled with Genetics by Environments (GxE) Model

description: We present the coupled Global Sensitivity Analysis (GSA) and Genetics by Environment model (GxE) framework (Sarzaeim and Muñoz-Arriola, submitted). GSA-GxE uses the sensitivity analysis method PAWN (Pianosi and Wagener, 2015) coupled with the environmental covariance matrix used in GxE modeling (Jarquin et al., 2014). GSA-GxE estimates the relative sensitivity of maize yield predictability to hydroclimate variables that interact with maize genetics from the environmental covariances and genetic marker structures. We include hydroclimate variables like temperature (T), solar radiation (SR), rainfall (R), and relative humidity (RH). The data, codes, and scripts presented here were used to develop and test the GSA-GxE framework. They were built upon an enhanced version of the multi-dimensional Genomes to Fields (G2F) database consisting of maize genetic, phenotypic, environmental, and metadata in 84 field experiments in 2014-2017 across the U.S. and province of Ontario, Canada (Sarzaeim et al., 2020, 2022, 2023). This digital package contains a multi-dimensional Climate and Omics dataset, the GSA-GxE framework created in Python, and the GxE model developed in R.


Acknowledgement


This work was supported by the Agriculture and Food Research Initiative Grant number NEB-21-176 and NEB-21-166 from the USDA National Institute of Food and Agriculture, Plant Health and Production and Plant Products: Plant Breeding for Agricultural Production. In addition, we thank the Genomes to Fields (G2F) Initiative for providing the database; and Quantifying Life Sciences Initiative at the University of Nebraska-Lincoln.
DOI: 10.5281/zenodo.8393662
title: GSA-GxE: A Framework of Global Sensitivity Analysis of Maize Coupled with Genetics by Environments (GxE) Model

description: We present the coupled Global Sensitivity Analysis (GSA) and Genetics by Environment model (GxE) framework (Sarzaeim and Muñoz-Arriola, submitted). GSA-GxE uses the sensitivity analysis method PAWN (Pianosi and Wagener, 2015) coupled with the environmental covariance matrix used in GxE modeling (Jarquin et al., 2014). GSA-GxE estimates the relative sensitivity of maize yield predictability to hydroclimate variables that interact with maize genetics from the environmental covariances and genetic marker structures. We include hydroclimate variables like temperature (T), solar radiation (SR), rainfall (R), and relative humidity (RH). The data, codes, and scripts presented here were used to develop and test the GSA-GxE framework. They were built upon an enhanced version of the multi-dimensional Genomes to Fields (G2F) database consisting of maize genetic, phenotypic, environmental, and metadata in 84 field experiments in 2014-2017 across the U.S. and province of Ontario, Canada (Sarzaeim et al., 2020, 2022, 2023). This digital package contains a multi-dimensional Climate and Omics dataset, the GSA-GxE framework created in Python, and the GxE model developed in R.


Acknowledgement


This work was supported by the Agriculture and Food Research Initiative Grant number NEB-21-176 and NEB-21-166 from the USDA National Institute of Food and Agriculture, Plant Health and Production and Plant Products: Plant Breeding for Agricultural Production. In addition, we thank the Genomes to Fields (G2F) Initiative for providing the database; and Quantifying Life Sciences Initiative at the University of Nebraska-Lincoln.
DOI: 10.15468/dl.me9su9
title: Occurrence Download

description: A dataset listing the 390 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is MEX.25.7_2",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2015-2024"
 ]
}

 The dataset's 390 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079585-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3kcs3k
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polystachya batkoi Szlach. & Olszewski"
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079609-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7j3d6z
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina orthandra (W.T.Wang) Mich.Möller & A.Weber"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079610-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vgysgu
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potentilla multiceps T.T.Yu & C.L.Li"
 ]
}

 The dataset includes 37 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079612-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gerfg4
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Podochilus cultratus Lindl."
 ]
}

 The dataset includes 37 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079611-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8s2hfu
title: Occurrence Download

description: A dataset containing 920 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Paradisaea rubra Daudin, 1800",
 "Year 2000-2024"
 ]
}

 The dataset includes 920 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079613-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgqmma
title: Occurrence Download

description: A dataset containing 920 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Paradisaea rubra Daudin, 1800",
 "Year 2000-2024"
 ]
}

 The dataset includes 920 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079614-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wcpdfa
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polystachya bella Summerh."
 ]
}

 The dataset includes 32 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079615-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p7xtym
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina parvifolia (W.T.Wang) Yin Z.Wang & J.M.Li"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079616-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.