cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16328478
title: GVSTRIP: Implementation Dossier - Confidential Evaluation Copy.

description: This data archive presents a working prototype and technical demonstrator of GVSTRIP, a novel, deterministic framework for encoding symbolic biological sequences (initially SARS-CoV-2) into ultra-compact, color-based visual representations.

The method achieves 100% accurate reconstruction of full-length sequences from a sequence of fixed-length color bands. This is not hashing, nor lossy compression but a reversible symbolic encoding that preserves every base (A, T, G, C) while dramatically reducing storage, bandwidth, and cognitive load.

Included are visual outputs, encoded files, validation reports, and controlled scripts that demonstrate the system's capability to:





Compress a ~30,000bp viral genome to 300 colored bands




Generate strips visually distinguishable across lineages




Reconstruct full FASTA sequences from color strips deterministically



This system has been tested on hundreds of SARS-CoV-2 genomes and produces 100% reversible outputs in validation.

This system has been tested on hundreds of SARS-CoV-2 genomes and has consistently demonstrated 100% reversible reconstruction accuracy in full-length, high-quality sequences. In a minority of cases, the accuracy dipped slightly to no less than 94.5%  primarily due to incomplete input sequences, ambiguous bases, or known sequencing artifacts. These occurrences highlight not a flaw in the framework, but the variability of real-world datasets. With targeted support and funding, the system can be robustly scaled for high-throughput batch runs and extended to accommodate larger genomes (e.g., human, bacterial). Future enhancements will also integrate direct linkage of each genomic segment to curated databases (e.g., NCBI, PDB, UniProt), enabling both visual navigation and molecular-level contextualization of each strip.

While this archive contains a working version of the encoder and decoder, not all algorithmic choices or design principles are revealed here. Critical mapping strategies and visual mechanics are abstracted or simplified to protect novelty.

The purpose of this archive is to:





Demonstrate feasibility for funding and academic review




Establish timestamped authorship




Enable early-stage dialogue with technical stakeholders



If you've received access to this DOI, you're invited to reach out via GVAtlas.org or the author's official email for deeper insights, licensing discussions, or collaboration.




Note: This dataset is not public. Redistribution, copying, or citation without written permission of the author is prohibited.
description: Reference:This technical demonstrator builds upon the public concept release available at:Bhatti, T. (2025). On a Deterministic Framework for Highly Compressed Reversible Representations of Symbolic Genomic Entities.https://doi.org/10.6084/m9.figshare.29621057
DOI: 10.5281/zenodo.16328479
title: GVSTRIP: Implementation Dossier - Confidential Evaluation Copy.

description: This data archive presents a working prototype and technical demonstrator of GVSTRIP, a novel, deterministic framework for encoding symbolic biological sequences (initially SARS-CoV-2) into ultra-compact, color-based visual representations.

The method achieves 100% accurate reconstruction of full-length sequences from a sequence of fixed-length color bands. This is not hashing, nor lossy compression but a reversible symbolic encoding that preserves every base (A, T, G, C) while dramatically reducing storage, bandwidth, and cognitive load.

Included are visual outputs, encoded files, validation reports, and controlled scripts that demonstrate the system's capability to:





Compress a ~30,000bp viral genome to 300 colored bands




Generate strips visually distinguishable across lineages




Reconstruct full FASTA sequences from color strips deterministically



This system has been tested on hundreds of SARS-CoV-2 genomes and produces 100% reversible outputs in validation.

This system has been tested on hundreds of SARS-CoV-2 genomes and has consistently demonstrated 100% reversible reconstruction accuracy in full-length, high-quality sequences. In a minority of cases, the accuracy dipped slightly to no less than 94.5%  primarily due to incomplete input sequences, ambiguous bases, or known sequencing artifacts. These occurrences highlight not a flaw in the framework, but the variability of real-world datasets. With targeted support and funding, the system can be robustly scaled for high-throughput batch runs and extended to accommodate larger genomes (e.g., human, bacterial). Future enhancements will also integrate direct linkage of each genomic segment to curated databases (e.g., NCBI, PDB, UniProt), enabling both visual navigation and molecular-level contextualization of each strip.

While this archive contains a working version of the encoder and decoder, not all algorithmic choices or design principles are revealed here. Critical mapping strategies and visual mechanics are abstracted or simplified to protect novelty.

The purpose of this archive is to:





Demonstrate feasibility for funding and academic review




Establish timestamped authorship




Enable early-stage dialogue with technical stakeholders



If you've received access to this DOI, you're invited to reach out via GVAtlas.org or the author's official email for deeper insights, licensing discussions, or collaboration.




Note: This dataset is not public. Redistribution, copying, or citation without written permission of the author is prohibited.
description: Reference:This technical demonstrator builds upon the public concept release available at:Bhatti, T. (2025). On a Deterministic Framework for Highly Compressed Reversible Representations of Symbolic Genomic Entities.https://doi.org/10.6084/m9.figshare.29621057
DOI: 10.15468/dl.34rczp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ganonema farinosum",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030039-250717081556266/datasets/export for details.
DOI: 10.15468/dl.mzaevg
title: Occurrence Download

description: A dataset containing 1694 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriogonum cinereum"
 ]
}

 The dataset includes 1694 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030040-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xbbazn
title: Occurrence Download

description: A dataset containing 501 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lontra provocax"
 ]
}

 The dataset includes 501 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030042-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uba4r2
title: Occurrence Download

description: A dataset containing 421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macaranga capensis",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 421 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030041-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sh6kg7
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myosotis discolor",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030044-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ur6wg
title: Occurrence Download

description: A dataset containing 4632 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cupido minimus"
 ]
}

 The dataset includes 4632 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030043-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gkpg7c
title: Occurrence Download

description: A dataset containing 2105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myosotis discolor",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2105 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030045-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bucbqy
title: Occurrence Download

description: A dataset containing 1649 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eritrichium villosum"
 ]
}

 The dataset includes 1649 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030050-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16324575
title: Reinforcement Learning-Based Target-Specific De Novo Design of Cyclic Peptide Binders

description: Databases required by CYC_BUILDER
DOI: 10.5281/zenodo.16332605
title: Reinforcement Learning-Based Target-Specific De Novo Design of Cyclic Peptide Binders

description: Databases required by CYC_BUILDER
DOI: 10.15468/dl.xqhqqa
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lemna minuta",
 "Country is Albania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030051-250717081556266/datasets/export for details.
DOI: 10.15468/dl.qzajms
title: Occurrence Download

description: A dataset containing 3449 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriogonum jamesii"
 ]
}

 The dataset includes 3449 records from 141 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030046-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.myk34b
title: Occurrence Download

description: A dataset containing 179790 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 {
 "or" : [
 "Country is Djibouti",
 "Country is Somalia",
 "Country is Eritrea",
 "Country is Yemen",
 "Country is Sudan",
 "Country is Saudi Arabia",
 "Country is Ethiopia",
 "Country is South Sudan",
 "Country is Kenya",
 "Country is Egypt"
 ]
 },
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 179790 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074606-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qtifw
title: Occurrence Download

description: A dataset listing the 267 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callithrix penicillata (É.Geoffroy Saint-Hilaire, 1812)"
 ]
}

 The dataset's 267 records were derived from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009347-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4ykeu
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Japan",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ictinogomphus rapax (Rambur, 1842)"
 ]
}

 The dataset includes 25 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0297392-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7wuhpu
title: Occurrence Download

description: A dataset containing 1993 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is ZAF.4.2_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ploceidae",
 "Year is 2018"
 ]
}

 The dataset includes 1993 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0255057-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cc2zve
title: Occurrence Download

description: A dataset containing 260 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Spain",
 "Country is Portugal",
 "Country is Gibraltar"
 ]
 },
 "TaxonKey is Armeria hirta Willd."
 ]
}

 The dataset includes 260 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259488-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxwp2j
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arthrolips fasciata (Erichson, 1842)"
 ]
}

 The dataset includes 35 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088242-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2qsde
title: Occurrence Download

description: A dataset containing 66394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((4.725 52.625,4.775 52.625,4.775 52.675,4.725 52.675,4.725 52.625))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 66394 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305266-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nf7wjn
title: Occurrence Download

description: A dataset containing 6516 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Salamandridae"
 ]
}

 The dataset includes 6516 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259484-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gn2pnj
title: Occurrence Download

description: A dataset containing 71632 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Tilia cordata Mill.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 71632 records from 409 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009348-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfyreg
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hylocereus megalanthus (K.Schum. ex Vaupel) Ralf Bauer"
 ]
}

 The dataset includes 55 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075368-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ay7rcf
title: Occurrence Download

description: A dataset containing 1357 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((4.725 52.525,4.775 52.525,4.775 52.575,4.725 52.575,4.725 52.525))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 1357 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305268-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqqxgh
title: Occurrence Download

description: A dataset containing 17632 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Geometry POLYGON((56.07426 -59.51587,237.11257 -60.52139,236.48842 8.28966,55.48412 9.21468,56.07426 -59.51587))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Meliaceae",
 "Year 1960-1990"
 ]
}

 The dataset includes 17632 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0413365-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vuwtjd
title: Occurrence Download

description: A dataset containing 19611 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "Country is Algeria",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 19611 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009348-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kktb2u
title: Occurrence Download

description: A dataset containing 1886647 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Myrica L., Corylus L., Carya Nutt., Tsuga (Endl.) Carrière, Juglans L., Carpinus L., Sanguisorba L., Thalictrum L.)",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation, Literature Occurrence, Material sample, Specimen, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1886647 records from 1763 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107030-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rs4bcd
title: Occurrence Download

description: A dataset containing 276135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nardus stricta L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 276135 records from 464 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299057-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vkxuc3
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stachys obliqua Waldst. & Kit.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0416443-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wq9nw8
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centaurea pumilio Hill, 1762",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 47 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0293321-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tdu8dy
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tulipa hungarica Borbás",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 16 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0415582-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rt3xu5
title: Occurrence Download

description: A dataset containing 146875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salix repens L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 146875 records from 354 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0260504-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uwd4nd
title: Occurrence Download

description: A dataset containing 2454 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eriophorum brachyantherum Trautv. & C.A.Mey.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2454 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0415899-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7796/igugu.main.study.data.plos.medicine.v1
title: iGugu Main Study Data PLOS Medicine
DOI: 10.15468/dl.u4xng6
title: Occurrence Download

description: A dataset containing 17226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Serapias lingua L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 17226 records from 197 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288712-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wr2f4p
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lotus longesiliquosus R.Roem.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 19 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154650-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.