cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25380/iastate.24185784
title: Diversity Array Technology based genetic polymorphism data of maize inducer and noninducer lines

description: Inducer lines are a critical component of the maize Doubled Haploid (DH) technology, which allows for the rapid development of homozygous inbred lines, saving time and resources. Here, we present a dataset of genetic polymorphisms of a diverse panel of 159 North American and European haploid inducers, genotyped with the Diversity Array Sequencing Technology (DArTseq). We also present a dataset of genetic polymorphisms of a panel of 793 noninducer maize genotypes, which were genotyped with the Diversity Array Sequencing Technology (DArTseq) too. The inducer panel was employed for a quantitative Genome-Wide Association Study (GWAS) analysis, whereas the inducer and noninducer panels were jointly employed for a case-control GWAS. A total of 9007 Single Nucleotide Polymorphism (SNP) markers were employed for both GWAS. The haploid induction rate (HIR) of each inducer was accessed across two planting dates (Trentin et al. 2023). Lack of significant induction ability in the panel of non-inducer genotypes was assumed, and verified by growing them in the field, were no haploid plants were observed. This is in accordance with Chase's (1947) observation that the occurrence of haploid plants in elite inbred lines happens at very low frequencies (&lt;0.1%) (Trentin et al. 2023). Genetic diversity among inducer lines is essential for creating new haploid-inducer lines and enhancing the efficiency of DH line production. We invite the scientific community to access and utilize this dataset, which holds significance for developing next generation haploid inducers. This data can be used further in SNP based- or haplotype based-GWAS and genomic selection (GS). Sharing this genetic polymorphism data in a public repository will facilitate collaboration, accelerate research, and contribute to the advancing maize research and breeding.
DOI: 10.5281/zenodo.7348725
title: Harmfull algae bloom monitoring program dataset; ERDDAP, ERA5 and ONI datasets; and R script for multicriteria analisys in Santa Catarina coastal zone, Brazil.

description: Project Harmful Algae Bloom (HAB) Monitoring Network in Santa Catarina, Brazil - Database and R script with data analysis. This project was funded by the Foundation for Research Support of the State of Santa Catarina – FAPESC and generated a database combining a HAB monitoring dataset with oceanographic (from ERDDAP) and climatic (from ERA5 and ONI) data which was submitted to multicriteria analysis using R. The HAB monitoring dataset was obtained from Cidasc/SC State Government (http://www.cidasc.sc.gov.br/defesasanitariaanimal/monitoramento-de-algas-nocivas/) and contains results of phytoplankton counts in water samples and toxin levels in shellfish samples obtained from 39 points located in shellfish farms distributed along the SC coastline. Oceanographic data were obtained from the ERDDAP/NOAA website (https://coastwatch.pfeg.noaa.gov/erddap/index.html), including the variables mean chlorophyll concentration (mg.m-3) and mean sea surface temperature (ºC); Climate data were obtained from Copernicus/ERA5 (https://cds.climate.copernicus.eu/) including the variables mean air temperature (ºC), mean pressure (Pasc.), mean cloud cover (%), mean precipitation (kg.m-2), radiation (Einsteins.m-2.day-1), mean U wind (m.s-1), and mean V wind (m.s-1).; Oceanic Niño Index (ONI) data were obtained from the NOAA website (https://origin.cpc.ncep.noaa.gov/products/analysis_monitoring/ensostuff/ONI_v5.php); The R script involves a pre-processing routine aimed at summarizing and integrating all datasets and the subsequent data analyses carried out to evidence temporal patterns related to different type of algal blooms. Detailed methods will be provided in a scientific article.
description: This project was funded by the Foundation for Research Support of the State of Santa Catarina - FAPESC.
DOI: 10.5281/zenodo.8387110
title: Chinese request sentences in ten novels

description: <strong>The data contains request sentences extracted from 10 novels. </strong>
DOI: 10.5281/zenodo.8387109
title: Chinese request sentences in ten novels

description: <strong>The data contains request sentences extracted from 10 novels. </strong>
DOI: 10.58119/ulg/49uqnu/kdwday
title: Lucretius_DeRerumNatura_LucrDRN5.BPN

description: :unav
DOI: 10.25380/iastate.24185784.v2
title: Diversity Array Technology based genetic polymorphism data of maize inducer and noninducer lines

description: Inducer lines are a critical component of the maize Doubled Haploid (DH) technology, which allows for the rapid development of homozygous inbred lines, saving time and resources. Here, we present a dataset of genetic polymorphisms of a diverse panel of 159 North American and European haploid inducers, genotyped with the Diversity Array Sequencing Technology (DArTseq). We also present a dataset of genetic polymorphisms of a panel of 793 noninducer maize genotypes, which were genotyped with the Diversity Array Sequencing Technology (DArTseq) too. The inducer panel was employed for a quantitative Genome-Wide Association Study (GWAS) analysis, whereas the inducer and noninducer panels were jointly employed for a case-control GWAS. A total of 9007 Single Nucleotide Polymorphism (SNP) markers were employed for both GWAS. The haploid induction rate (HIR) of each inducer was accessed across two planting dates (Trentin et al. 2023). Lack of significant induction ability in the panel of non-inducer genotypes was assumed, and verified by growing them in the field, were no haploid plants were observed. This is in accordance with Chase's (1947) observation that the occurrence of haploid plants in elite inbred lines happens at very low frequencies (&lt;0.1%) (Trentin et al. 2023). Genetic diversity among inducer lines is essential for creating new haploid-inducer lines and enhancing the efficiency of DH line production. We invite the scientific community to access and utilize this dataset, which holds significance for developing next generation haploid inducers. This data can be used further in SNP based- or haplotype based-GWAS and genomic selection (GS). Sharing this genetic polymorphism data in a public repository will facilitate collaboration, accelerate research, and contribute to the advancing maize research and breeding.
DOI: 10.57745/mzay83
title: 20191024_18-055_9-2.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 12hours WITHOUT Vancomycin. Biological replicate 'C'. SDS Fraction 2/2.
DOI: 10.58119/ulg/49uqnu/dllz0p
title: List of available Latin LASLA BPN files.docx

description: :unav
DOI: 10.58119/ulg/49uqnu/5yjwb0
title: Curtius_CurtiusHistoriaeAlexandriMagni_QCurt09.BPN

description: :unav
DOI: 10.58119/ulg/49uqnu/fxwbjo
title: Curtius_CurtiusHistoriaeAlexandriMagni_QCurt03.BPN

description: :unav
DOI: 10.58119/ulg/49uqnu/ugpguq
title: Tacitus_TacHistoriae_TacHist2.BPN

description: :unav
DOI: 10.58119/ulg/49uqnu/ismzvp
title: Cicero_InLCalpurniumPisonem_CicPis.BPN

description: :unav
DOI: 10.5281/zenodo.8387112
title: Bottom-up effects of apple cultivars on parasitoids via aphid hosts

description: Variability of intraspecific host plant quality for phytophagous insects may have consequences on the structure and functioning of associated food webs. The quality of host plants can affect aphids fitness, influencing their life history traits and altering the nutritional resources available to higher trophic levels, potentially affecting the development of solitary parasitoids. Here, we assessed the potential bottom-up effects of intraspecific variability amongst three cultivars (Gala, Ariane and Greensleeves) of the domesticated apple tree (<em>Malus domestica</em>) with putative resistance towards the rosy apple aphid (<em>Dysaphis plantaginea</em>) on the aphid’s performance, and its cascading effects on the parasitoid <em>Ephedrus cerasicola</em>. We measured aphid pre-reproductive period, lipid and water contents, and recorded their feeding behavior using the electropenetrography technique. Parasitoid developmental duration, sex ratio, hind tibia size and female egg load were measured and used to evaluate <em>E. cerasicola</em> performance according to the cultivar on which their aphid hosts had been reared. Only the development time of parasitoids was found to be longer on Ariane and Green Sleeves cultivars than on the Gala cultivar. Aphid feeding behavior variables related to phloem consumption were negatively impacted on apple tree cultivars on which the development time of parasitoids had been reduced. We discuss in what way cultivar quality can be an important component of tritrophic interactions: the resistant Ariane and Green Sleeves cultivars negatively impacted the aphids but appeared to have limited bottom-up effects on the parasitoids.
DOI: 10.57745/sbstvl
title: 20191024_18-055_2-1.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 6hours WITHOUT Vancomycin. Biological replicate 'B'. SDS Fraction 1/2.
DOI: 10.58119/ulg/49uqnu/h1z5cy
title: Plinius_PliniusEpistulae_PliEp04.BPN

description: :unav
DOI: 10.5281/zenodo.8387111
title: Bottom-up effects of apple cultivars on parasitoids via aphid hosts

description: Variability of intraspecific host plant quality for phytophagous insects may have consequences on the structure and functioning of associated food webs. The quality of host plants can affect aphids fitness, influencing their life history traits and altering the nutritional resources available to higher trophic levels, potentially affecting the development of solitary parasitoids. Here, we assessed the potential bottom-up effects of intraspecific variability amongst three cultivars (Gala, Ariane and Greensleeves) of the domesticated apple tree (<em>Malus domestica</em>) with putative resistance towards the rosy apple aphid (<em>Dysaphis plantaginea</em>) on the aphid’s performance, and its cascading effects on the parasitoid <em>Ephedrus cerasicola</em>. We measured aphid pre-reproductive period, lipid and water contents, and recorded their feeding behavior using the electropenetrography technique. Parasitoid developmental duration, sex ratio, hind tibia size and female egg load were measured and used to evaluate <em>E. cerasicola</em> performance according to the cultivar on which their aphid hosts had been reared. Only the development time of parasitoids was found to be longer on Ariane and Green Sleeves cultivars than on the Gala cultivar. Aphid feeding behavior variables related to phloem consumption were negatively impacted on apple tree cultivars on which the development time of parasitoids had been reduced. We discuss in what way cultivar quality can be an important component of tritrophic interactions: the resistant Ariane and Green Sleeves cultivars negatively impacted the aphids but appeared to have limited bottom-up effects on the parasitoids.
DOI: 10.57745/xdtj39
title: 20191024_18-055_1-1.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 6hours without Vancomycin. Biological replicate 'A'. SDS Fraction1/2.
DOI: 10.58119/ulg/49uqnu/uyvyv7
title: Cicero_ProNegotiatoribusAchaeisFragmenta_CicNegAc.BPN

description: :unav
DOI: 10.58119/ulg/49uqnu/u9vbku
title: Cicero_DeRegeAlexandrinoFragmenta_CicAlex.BPN

description: :unav
DOI: 10.58119/ulg/49uqnu/ttad2g
title: Lucretius_DeRerumNatura_LucrDRN6.BPN

description: :unav
DOI: 10.58119/ulg/49uqnu/digofb
title: Vergilius_Georgica_VerGeor1.BPN

description: :unav
DOI: 10.57745/cz97h3
title: 20191024_18-055_1-2.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 6hours without Vancomycin. Biological replicate 'A'. SDS Fraction2/2.
DOI: 10.57745/43zfrt
title: 20191024_18-055_2-2.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 6hours WITHOUT Vancomycin. Biological replicate 'B'. SDS Fraction 2/2.
DOI: 10.6084/m9.figshare.24212655.v1
title: BOUCHER_supplemental table 2_ Classification of MEN1 variants according to the ACMG-AMP guidelines

description: supplemental table 2_ Classification of MEN1 variants according to the ACMG-AMP guidelines
DOI: 10.5281/zenodo.6620589
title: Euterpe edulis potential model Santa Catarina

description: FISC dataset for presence of E. edulis and biophysical data. R code for data analysis.
DOI: 10.58119/ulg/49uqnu/aub9kc
title: Curtius_CurtiusHistoriaeAlexandriMagni_QCurt10.BPN

description: :unav
DOI: 10.57745/mz0ern
title: 20191024_18-055_4-1.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 6hours WITH Vancomycin. Biological replicate 'A'. SDS Fraction 1/2.
DOI: 10.5281/zenodo.6620588
title: Euterpe edulis potential model Santa Catarina

description: FISC dataset for presence of E. edulis and biophysical data. R code for data analysis.
DOI: 10.58119/ulg/49uqnu/kehh1g
title: Cicero_DeAmicitia_CicAmici.BPN

description: :unav
DOI: 10.57745/arg1hx
title: 20191024_18-055_3-2.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 6hours WITHOUT Vancomycin. Biological replicate 'C'. SDS Fraction 2/2.
DOI: 10.58119/ulg/49uqnu/g4n2co
title: Cicero_DivinatioinQCaecilium_CicDivCa.BPN

description: :unav
DOI: 10.57745/mgjjem
title: 20191024_18-055_3-1.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 6hours WITHOUT Vancomycin. Biological replicate 'C'. SDS Fraction 1/2.
DOI: 10.6084/m9.figshare.23814852
title: Lacticaseibacillus huelsenbergensis sp. novel, isolated from grass silage and corn silage

description: Supplementary material and phylogenetic trees for the manuscript Lacticaseibacillus huelsenbergensis sp. novel, isolated from grass silage and corn silage
DOI: 10.6084/m9.figshare.23814852.v1
title: <i>Lacticaseibacillus huelsenbergensis</i> sp. novel, isolated from grass silage and corn silage

description: Supplementary material for '<i>Lacticaseibacillus huelsenbergensis</i> sp. novel, isolated from grass silage and corn silage', as described in <i>International Journal of Systematic and Evolutionary Microbiology</i>.Supplementary material and phylogenetic trees for the manuscript Lacticaseibacillus huelsenbergensis sp. novel, isolated from grass silage and corn silage
DOI: 10.58119/ulg/49uqnu/gowdbd
title: Caesar_BellumGallicum_CaesBG6.BPN

description: :unav
DOI: 10.57745/j5cbrb
title: 20191024_18-055_4-2.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 6hours WITH Vancomycin. Biological replicate 'A'. SDS Fraction 2/2.
DOI: 10.58119/ulg/49uqnu/szf64f
title: Caesar_BellumGallicum_CaesBG4.BPN

description: :unav
DOI: 10.58119/ulg/49uqnu/hnd9pw
title: Cicero_ProFlacco_CicFlac.BPN

description: :unav
DOI: 10.58119/ulg/49uqnu/jsgjdh
title: LASLA-Dictionary.pdf

description: :unav
DOI: 10.57745/0iszc7
title: 20191024_18-055_6-2b.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 6hours WITH Vancomycin. Biological replicate 'C'. SDS Fraction 2/2.
DOI: 10.58119/ulg/49uqnu/7xpyah
title: Cicero_PhilippicaOratio_CicPhi13.BPN

description: :unav
DOI: 10.58119/ulg/49uqnu/k17rnh
title: Lucretius_DeRerumNatura_LucrDRN1.BPN

description: :unav
DOI: 10.57745/qubifn
title: 20191024_18-055_5-2.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 6hours WITH Vancomycin. Biological replicate 'B'. SDS Fraction 2/2.
DOI: 10.57745/8z0vy4
title: 20191024_18-055_6-1.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 6hours WITH Vancomycin. Biological replicate 'C'. SDS Fraction 1/2.
DOI: 10.57745/6g2fxj
title: 20191024_18-055_5-1.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 6hours WITH Vancomycin. Biological replicate 'B'. SDS Fraction 1/2.
DOI: 10.58119/ulg/49uqnu/2kzlup
title: Curtius_CurtiusHistoriaeAlexandriMagni_QCurt05.BPN

description: :unav
DOI: 10.57745/xxvb3z
title: 20191024_18-055_8-2.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 12hours WITHOUT Vancomycin. Biological replicate 'B'. SDS Fraction 2/2.
DOI: 10.58119/ulg/49uqnu/j7bnbc
title: Horatius_Epodi_HorEpodi.BPN

description: :unav
DOI: 10.57745/raxhjr
title: 20191024_18-055_7-1.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 12hours WITHOUT Vancomycin. Biological replicate 'A'. SDS Fraction 1/2.
DOI: 10.58119/ulg/49uqnu/nf6kwc
title: Seneca_DeProvidentia_SenProvi.BPN

description: :unav
DOI: 10.58119/ulg/49uqnu/dou68r
title: Sallustius_FragmentaHistoriarum_SalHistF.BPN

description: :unav
DOI: 10.57745/nl91b7
title: 20191024_18-055_7-2.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 12hours WITHOUT Vancomycin. Biological replicate 'A'. SDS Fraction 2/2.
DOI: 10.58119/ulg/49uqnu/thbuqr
title: Cicero_InCatilinam_CicCat1.BPN

description: :unav
DOI: 10.58119/ulg/49uqnu/jvkwpx
title: Cicero_InVerremActioSecunda_Cic2Ver2.BPN

description: :unav
DOI: 10.57745/1rpcdm
title: 20191024_18-055_8-1.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 12hours WITHOUT Vancomycin. Biological replicate 'B'. SDS Fraction 1/2.
DOI: 10.58119/ulg/49uqnu/6vrpph
title: Tacitus_TacAgricola_TacAgric.BPN

description: :unav
DOI: 10.57745/9ghqcq
title: 20191024_18-055_9-1.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 12hours WITHOUT Vancomycin. Biological replicate 'C'. SDS Fraction 1/2.
DOI: 10.58119/ulg/49uqnu/x8anmk
title: PseudoCaesar3_BellumHispanum_BHisp.BPN

description: :unav
DOI: 10.57745/7qul9d
title: 20191024_18-055_11-1.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 12hours WITH Vancomycin. Biological replicate 'B'. SDS Fraction1/2.
DOI: 10.58119/ulg/49uqnu/goy27s
title: Horatius_ArsPoetica_HorArsPo.BPN

description: :unav
DOI: 10.58119/ulg/49uqnu/ccdmnr
title: Cicero_InPClodiumEtCCurionemFragmenta_CicClodi.BPN

description: :unav
DOI: 10.58119/ulg/49uqnu/2zxpne
title: Cicero_ProSulla_CicSul.BPN

description: :unav
DOI: 10.57745/cmqw57
title: 20191024_18-055_11-2.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 12hours WITH Vancomycin. Biological replicate 'B'. SDS Fraction 2/2.
DOI: 10.58119/ulg/49uqnu/jl8wip
title: Lucretius_DeRerumNatura_LucrDRN3.BPN

description: :unav
DOI: 10.57745/uphtwi
title: 20191024_18-055_10-2.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 12hours WITH Vancomycin. Biological replicate 'A'. SDS Fraction 2/2.
DOI: 10.5281/zenodo.7469900
title: Local Monitoring of Photosensitizer Transient States Provides Feedback for Enhanced Efficiency and Targeting Selectivity in Photodynamic Therapy.

description: <strong>This folder contains all raw data underlying the results presented in a manuscript, accepted for publication in Scientifc Reports, entitled:</strong> <strong>Local Monitoring of Photosensitizer Transient States Provides Feedback for Enhanced Efficiency and Targeting Selectivity in Photodynamic Therapy.</strong> <strong>Authored by:</strong> Elin Sandberg <sup>1</sup>, Chinmaya V Srambickal <sup>1</sup>, Joachim Piguet <sup>1</sup>, Haichun Liu <sup>1</sup> and Jerker Widengren <sup>1,</sup>* <sup>1</sup> Experimental Biomolecular Physics, Department of Applied Physics, Royal Institute of Technology (KTH), Stockholm, Sweden <sup>* </sup>To whom correspondence should be addressed. Email: jwideng@kth.se. Tel: +46-8-7907813 <strong>The data files are grouped with respect to the figures/tables in the manuscript where the extracted results are presented. </strong> <strong>ABSTRACT</strong> Photodynamic therapy (PDT) fundamentally relies on local generation of PDT precursor states in added photosensitizers (PS), particularly triplet and photo-radical states. Monitoring these states <em>in situ</em> can provide important feedback but is difficult in practice. The states are strongly influenced by local oxygenation, pH and redox conditions, often varying significantly at PDT treatment sites. To overcome this problem, we followed local PDT precursor state populations of PS compounds, via their fluorescence intensity response to systematically varied excitation light modulation. Thereby, we could demonstrate local monitoring of PDT precursor states of methylene blue (MB) and IRdye700DX (IR700), and determined their transitions rates under different oxygenation, pH and redox conditions. By fiber-optics, using one fiber for both excitation and fluorescence detection, the triplet and photo-radical state kinetics of locally applied MB and IR700 could then be monitored in a tissue sample. Finally, potassium iodide and ascorbate were added as possible PDT adjuvants, enhancing intersystem crossing and photoreduction, respectively, and their effects on the PDT precursor states of MB and IR700 could be locally monitored. Taken together, the presented procedure overcomes current methodological limitations and can offer feedback, guiding both excitation and PDT adjuvant application, and thereby more efficient and targeted PDT treatments.
DOI: 10.57745/fqpiwx
title: 20191024_18-055_10-1.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 12hours WITH Vancomycin. Biological replicate 'A'. SDS Fraction1/2.
DOI: 10.57745/cdsaar
title: 20191106_18-055_13-2bis.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 extracellular vesicules after 6hours WITHOUT Vancomycin. Biological replicate 'A'. SDS Fraction 2/2.
DOI: 10.58119/ulg/49uqnu/renmju
title: Tacitus_TacAnnales_TacAnn01.BPN

description: :unav
DOI: 10.58119/ulg/49uqnu/xdad8s
title: Vergilius_Georgica_VerGeor3.BPN

description: :unav
DOI: 10.57745/lcpwoo
title: 20191024_18-055_12-1.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 12hours WITH Vancomycin. Biological replicate 'C'. SDS Fraction 1/2.
DOI: 10.57745/v8tbcl
title: 20191024_18-055_12-2.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 whole cell after 12hours WITH Vancomycin. Biological replicate 'C'. SDS Fraction 2/2.
DOI: 10.57745/xctnns
title: 20191106_18-055_13-1ter.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 extracellular vesicules after 6hours WITHOUT Vancomycin. Biological replicate 'A'. SDS Fraction 1/2.
DOI: 10.57745/cw9cgh
title: 20191106_18-055_14-2bis.mzXML

description: LC-MSMS Analysis of Staphylococcus aureus HG003 extracellular vesicules after 6hours WITHOUT Vancomycin. Biological replicate 'B'. SDS Fraction 2/2.