cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12067332.v3
title: DL_Models_Inference_Results

description: This dataset contains all the inference results for 83 runs of training experiments on the FPN2-WS and MRCNN nuclear segmentation models
DOI: 10.6084/m9.figshare.12067332.v4
title: DL_Models_Inference_Results

description: This dataset contains all the inference results for 83 runs of training experiments on the FPN2-WS and MRCNN nuclear segmentation models
DOI: 10.6084/m9.figshare.12066711
title: SURGICAL RESOURCES latestmarch2016.xlsx

description: Surgical resources in South Africa according to province (2016)
DOI: 10.6084/m9.figshare.12066717
title: Wood and bark of Buddleja: uniseriate phellem, and systematic and ecological patterns

description: Wood anatomical traits and bioclimatic data for studied <i>Buddleja </i>and <i>Freylinia</i> specimens and species. <br>Frankiewicz KE, Chau JH, Oskolski AA. 2020. Wood and bark of Buddleja: uniseriate phellem, and systematic and ecological patterns. IAWA Journal
DOI: 10.6084/m9.figshare.12067332.v5
title: DL_Models_Inference_Results

description: This dataset contains all the inference results for 83 runs of training experiments on the FPN2-WS and MRCNN nuclear segmentation models
DOI: 10.6084/m9.figshare.12066717.v1
title: Wood and bark of Buddleja: uniseriate phellem, and systematic and ecological patterns (data matrix)

description: Wood anatomical traits and bioclimatic data for studied <i>Buddleja </i>and <i>Freylinia</i> specimens and species. <br>Frankiewicz KE, Chau JH, Oskolski AA. 2020. Wood and bark of Buddleja: uniseriate phellem, and systematic and ecological patterns. IAWA Journal: in press
DOI: 10.6084/m9.figshare.12066717.v3
title: Wood and bark of Buddleja: uniseriate phellem, and systematic and ecological patterns

description: Wood anatomical traits and bioclimatic data for studied <i>Buddleja </i>and <i>Freylinia</i> specimens and species. <br>Frankiewicz KE, Chau JH, Oskolski AA. 2020. Wood and bark of Buddleja: uniseriate phellem, and systematic and ecological patterns. IAWA Journal
DOI: 10.6084/m9.figshare.12066717.v2
title: Wood and bark of Buddleja: uniseriate phellem, and systematic and ecological patterns IAWA Journal (in press)

description: Wood anatomical traits and bioclimatic data for studied <i>Buddleja </i>and <i>Freylinia</i> specimens and species. <br>Frankiewicz KE, Chau JH, Oskolski AA. 2020. Wood and bark of Buddleja: uniseriate phellem, and systematic and ecological patterns. IAWA Journal: in press
DOI: 10.5281/zenodo.4000398
title: TweetBLM: A Hate Speech Dataset and Analysis of BlackLivesMatter-related Microblogs on Twitter

description: Collection of BLM related tweets and their corresponding labels of hate speech.
DOI: 10.6084/m9.figshare.12065406
title: DATA-PlosOne

description: APA Rome flows per hourAPA London flows per hours
DOI: 10.6084/m9.figshare.12065079
title: Relationship between periodontitis and rheumatoid arthritis in Vietnamese patients

description: <b>Objective:</b> This study aimed to survey periodontal status of Vietnamese patients with rheumatoid arthritis (RA) and investigates the association between periodontitis and RA in these patients. <b>Materials and methods:</b> We conducted a cross-sectional descriptive study on 150 RA patients and another 150 patients with osteoarthritis (OA). RA was evaluated using the DAS28 disease activity score based on C-reactive protein levels (DAS28-CRP), disease activity classification, and serum levels of RA biomarkers. Periodontal status was determined using periodontal indices. <b>Results:</b> The proportion of periodontitis cases in the RA group was significantly higher than the OA group (67 and 28%, respectively). The rate of severe periodontitis observed in the RA group was also significantly higher than that in the OA group (22.7 and 8%, respectively). RA patients with periodontitis had higher DAS28-CRP scores, disease activity levels, ACPA positivity and higher serum levels of CRP and ACPAs. Periodontitis is associated with an increased risk for RA (odds ratio [OR]: 5.14, 95% confidence interval [CI]: 3.14 − 8.41) and with higher disease activity classification (OR: 2.7, 95% CI: 1.14 − 6.42). <b>Conclusions:</b> Vietnamese RA patients often presented with a more serious periodontal condition than OA patients. We observed an association between periodontal disease (PD) status and clinic symptoms and biochemical/immunological characteristics of RA.
DOI: 10.6084/m9.figshare.12065406.v1
title: DATA-PlosOne

description: APA Rome flows per hourAPA London flows per hours
DOI: 10.6084/m9.figshare.12065079.v1
title: Relationship between periodontitis and rheumatoid arthritis in Vietnamese patients

description: <b>Objective:</b> This study aimed to survey periodontal status of Vietnamese patients with rheumatoid arthritis (RA) and investigates the association between periodontitis and RA in these patients. <b>Materials and methods:</b> We conducted a cross-sectional descriptive study on 150 RA patients and another 150 patients with osteoarthritis (OA). RA was evaluated using the DAS28 disease activity score based on C-reactive protein levels (DAS28-CRP), disease activity classification, and serum levels of RA biomarkers. Periodontal status was determined using periodontal indices. <b>Results:</b> The proportion of periodontitis cases in the RA group was significantly higher than the OA group (67 and 28%, respectively). The rate of severe periodontitis observed in the RA group was also significantly higher than that in the OA group (22.7 and 8%, respectively). RA patients with periodontitis had higher DAS28-CRP scores, disease activity levels, ACPA positivity and higher serum levels of CRP and ACPAs. Periodontitis is associated with an increased risk for RA (odds ratio [OR]: 5.14, 95% confidence interval [CI]: 3.14 − 8.41) and with higher disease activity classification (OR: 2.7, 95% CI: 1.14 − 6.42). <b>Conclusions:</b> Vietnamese RA patients often presented with a more serious periodontal condition than OA patients. We observed an association between periodontal disease (PD) status and clinic symptoms and biochemical/immunological characteristics of RA.
DOI: 10.6084/m9.figshare.12063744
title: Adjusting for reporting lags using public iPHIS file

description: Excel spreadsheet that demonstrates inflation of RHS for lags in reporting for COVID-19. Data are derived from: https://data.ontario.ca/dataset/confirmed-positive-cases-of-covid-19-in-ontario. Assumes exponential hazards with average lags of 5, 6 or 7 days.
DOI: 10.6084/m9.figshare.12063744.v1
title: Adjusting for reporting lags using public iPHIS file

description: Excel spreadsheet that demonstrates inflation of RHS for lags in reporting for COVID-19. Data are derived from: https://data.ontario.ca/dataset/confirmed-positive-cases-of-covid-19-in-ontario. Assumes exponential hazards with average lags of 5, 6 or 7 days.
DOI: 10.25375/uct.12063591
title: High temperatures are associated with substantial reductions in breeding success and offspring quality in an arid-zone bird

description: Datasets include hornbill provisioning data (20200402_ProvisioningData; table 1), female and chick body mass change (20200402_MbChange; table 2 and figure 1), fledgling development data (20200402_FledglingDevelopment; figure 2), probability of fledging success data (20200402_FledgingProbability; figure 3) and data for SEM analysis (20200402_SEMdata; figure 4).
DOI: 10.25375/uct.12063591.v1
title: High temperatures are associated with substantial reductions in breeding success and offspring quality in an arid-zone bird

description: Datasets include hornbill provisioning data (20200402_ProvisioningData; table 1), female and chick body mass change (20200402_MbChange; table 2 and figure 1), fledgling development data (20200402_FledglingDevelopment; figure 2), probability of fledging success data (20200402_FledgingProbability; figure 3) and data for SEM analysis (20200402_SEMdata; figure 4).
DOI: 10.15131/shef.data.12063498
title: Children, Technology and Play – Family Case Studies Audio transcriptions

description: The <i>Family Case Studies Audio Transcriptions</i> dataset forms part of <b>Children, Technology and Play</b> (2019-2020), an 8-month co-produced study by academics from the University of Sheffield and University of Cape Town, South Africa, the LEGO Foundation and Dubit. The study explored the contemporary play environments of children to identify the ways in which their play is shaped by technology, examine the relationship between digital play, learning and creativity, and explore the role of adults in mediating digital play. The UK research included case studies of 10 families in Sheffield with focus children aged 3-11. Each was visited 6 times at home and a range of qualitative data collection methods was employed. This dataset comprises the transcriptions of audio interviews with the famiiles, the teachers of the focus child/children and the leaders of out-of-school clubs they attended, plus a spreadsheet containing relevant metadata. Personal and school names have been pseudonymised. The project received ethical approval from the University of Sheffield (no. 028701). The research tools and other datasets from the study are deposited elsewhere in ORDA and have been brought together in the <b>Children, Technology and Play collection</b>.
DOI: 10.5522/04/12063558
title: Non-invasive MRI of Blood-Cerebospinal Fluid Barrier Function; Combined Diffusion/ ASL sequence (Figure 1 E)

description: This is the combined diffusion-weighed / arterial spin labelling data set from the work 'Non-invasive MRI of Blood-Cerebrospinal Fluid Barrier Function' (Evans et al., 2020, Figure 1E]. The experiments were designed to ensure there was negligible intra-vascular signal contributions from the BCSFB-ASL signal. <br> The data is in Matlab format. The BCSFB-ASL data is in a 4D array where the first two array elements are the 2D MRI images, the 3rd element is the interleaved tagged and control images (inner most loop) together with the B0 and diffusion weighted images (b=200 s/mm2) together with the number of repetitions (outer most loop, 20 repetitions) and the 4th element is the number of inflow times (750, 2750 and 6500 ms).<br>The traditional ASL data is in the same format but there is only 1 inflow time (750ms) and 5 rather then 20 repetitions.
DOI: 10.5522/04/12063558.v1
title: Non-invasive MRI of Blood-Cerebospinal Fluid Barrier Function; Combined Diffusion/ ASL sequence (Figure 1 E)

description: This is the combined diffusion-weighed / arterial spin labelling data set from the work 'Non-invasive MRI of Blood-Cerebrospinal Fluid Barrier Function' (Evans et al., 2020, Figure 1E]. The experiments were designed to ensure there was negligible intra-vascular signal contributions from the BCSFB-ASL signal. <br> The data is in Matlab format. The BCSFB-ASL data is in a 4D array where the first two array elements are the 2D MRI images, the 3rd element is the interleaved tagged and control images (inner most loop) together with the B0 and diffusion weighted images (b=200 s/mm2) together with the number of repetitions (outer most loop, 20 repetitions) and the 4th element is the number of inflow times (750, 2750 and 6500 ms).<br>The traditional ASL data is in the same format but there is only 1 inflow time (750ms) and 5 rather then 20 repetitions.
DOI: 10.15131/shef.data.12063498.v2
title: Children, Technology and Play – Family Case Studies Audio transcriptions

description: The <i>Family Case Studies Audio Transcriptions</i> dataset forms part of <b>Children, Technology and Play</b> (2019-2020), an 8-month co-produced study by academics from the University of Sheffield and University of Cape Town, South Africa, the LEGO Foundation and Dubit. The study explored the contemporary play environments of children to identify the ways in which their play is shaped by technology, examine the relationship between digital play, learning and creativity, and explore the role of adults in mediating digital play. The UK research included case studies of 10 families in Sheffield with focus children aged 3-11. Each was visited 6 times at home and a range of qualitative data collection methods was employed. This dataset comprises the transcriptions of audio interviews with the famiiles, the teachers of the focus child/children and the leaders of out-of-school clubs they attended, plus a spreadsheet containing relevant metadata. Personal and school names have been pseudonymised. The project received ethical approval from the University of Sheffield (no. 028701). The research tools and other datasets from the study are deposited elsewhere in ORDA and have been brought together in the <b>Children, Technology and Play collection</b>.
DOI: 10.6084/m9.figshare.12063480
title: FlowFrontNet Data: Sensor to Flowfront / Dryspot

description: Data from PAM RTM Simulations: Variations in the textile yield changes in the flowfront.<br>Two datasets are published:1. Sensor data (pressure) and corresponding flow front images2. Sensor data (pressure) and corresponding classifications in dryspot and no dryspot.<br>For more information see the FlowFrontNet paper.<br>Version History:6. Added "chunked" datasets that can be loaded with ordinary amounts of memory.5. Starting with version 5, an unshuffled version of the training set is was added due to popular request.4. Training, validation and test set are now available as pickled lists of tensors.&lt;3: Training set available as pickeled Dataiterator. Not user-friendly because correct environment with corresponding classes had to be loaded.
DOI: 10.15131/shef.data.12063498.v1
title: Children, Technology and Play – Family Case Studies Audio transcriptions

description: The <i>Family Case Studies Audio Transcriptions</i> dataset forms part of <b>Children, Technology and Play</b> (2019-2020), an 8-month co-produced study by academics from the University of Sheffield and University of Cape Town, South Africa, the LEGO Foundation and Dubit. The study explored the contemporary play environments of children to identify the ways in which their play is shaped by technology, examine the relationship between digital play, learning and creativity, and explore the role of adults in mediating digital play. The UK research included case studies of 10 families in Sheffield with focus children aged 3-11. Each was visited 6 times at home and a range of qualitative data collection methods was employed. This dataset comprises the transcriptions of audio interviews with the famiiles, the teachers of the focus child/children and the leaders of out-of-school clubs they attended, plus a spreadsheet containing relevant metadata. Personal and school names have been pseudonymised. The project received ethical approval from the University of Sheffield (no. 028701). The research tools and other datasets from the study are deposited elsewhere in ORDA and have been brought together in the <b>Children, Technology and Play collection</b>.
DOI: 10.6084/m9.figshare.12063450
title: phosphorylation of CBX8

description: We performed in vitro phosphorylation of CBX8 and used mass spectrometry to identify which residue of CBX8 was phosphorylated by PKD1-CA. Three phosphorylated serine sites including Ser219, Ser236, and Ser256 were mapped by mass spectrometry
DOI: 10.6084/m9.figshare.12063450.v1
title: phosphorylation of CBX8

description: We performed in vitro phosphorylation of CBX8 and used mass spectrometry to identify which residue of CBX8 was phosphorylated by PKD1-CA. Three phosphorylated serine sites including Ser219, Ser236, and Ser256 were mapped by mass spectrometry
DOI: 10.6084/m9.figshare.12063480.v1
title: FlowFrontNet Data: Sensor to Flowfront / Dryspot

description: Data from PAM RTM Simulations: Variations in the textile yield changes in the flowfront.<br>Two datasets are published:1. Sensor data (pressure) and corresponding flow front images2. Sensor data (pressure) and corresponding classifications in dryspot and no dryspot.<br>For more information see the FlowFrontNet paper.
DOI: 10.6084/m9.figshare.12063387
title: Comparison of methods to obtain and maintain cultures of the pinewood nematode, <i>Bursaphelenchus xylophilus</i>

description: The pinewood nematode <i>Bursaphelenchus xylophilus</i>, native from North America, is the causal agent of the pine wilt disease, being considered one of the most important invasive pests in Eurasian pine forests. The establishment of laboratory isolates of <i>B. xylophilus</i> has been crucial to research on this important pathogen of pine trees. However, studies on the effects of <i>in vitro</i> serial passage on the pathogen evolution, and suitability of standard culture media to the wild populations have been surprisingly few. In the present work, we tested the suitability of different culture media for obtaining <i>B. xylophilus</i> lab populations from dauer larvae that have been isolated from pine sawyer beetles (<i>Monochamus</i> spp.), which serve as their vector. We conducted studies in North America and Portugal. Results showed that adding groundwood (xylem from pine trees) to standard agar medium dramatically improves the survival and growth of wild populations of <i>B. xylophilus</i> in the laboratory. Further, malt extract agar proved to be more suitable than potato dextrose agar. Once in culture, <i>B. xylophilus</i> grew well feeding on either of two fungus species: <i>Botrytis cinerea</i> or <i>Ophiostoma minus</i>. Growth rates were highest on <i>B. cinerea</i>, the most widely used fungus to maintain lab cultures of <i>B. xylophilus</i>, but <i>O. minus</i> has the advantage of being a natural associate and putative diet of wild populations. There remains a need for better understanding of how to obtain and maintain laboratory populations of this pathogen such that their natural characteristics are maintained.
DOI: 10.6084/m9.figshare.12063480.v2
title: FlowFrontNet Data: Sensor to Flowfront / Dryspot

description: Data from PAM RTM Simulations: Variations in the textile yield changes in the flowfront.<br>Two datasets are published:1. Sensor data (pressure) and corresponding flow front images2. Sensor data (pressure) and corresponding classifications in dryspot and no dryspot.<br>For more information see the FlowFrontNet paper.
DOI: 10.6084/m9.figshare.12063387.v2
title: Comparison of methods to obtain and maintain cultures of the pinewood nematode, <i>Bursaphelenchus xylophilus</i>

description: The pinewood nematode <i>Bursaphelenchus xylophilus</i>, native from North America, is the causal agent of the pine wilt disease, being considered one of the most important invasive pests in Eurasian pine forests. The establishment of laboratory isolates of <i>B. xylophilus</i> has been crucial to research on this important pathogen of pine trees. However, studies on the effects of <i>in vitro</i> serial passage on the pathogen evolution, and suitability of standard culture media to the wild populations have been surprisingly few. In the present work, we tested the suitability of different culture media for obtaining <i>B. xylophilus</i> lab populations from dauer larvae that have been isolated from pine sawyer beetles (<i>Monochamus</i> spp.), which serve as their vector. We conducted studies in North America and Portugal. Results showed that adding groundwood (xylem from pine trees) to standard agar medium dramatically improves the survival and growth of wild populations of <i>B. xylophilus</i> in the laboratory. Further, malt extract agar proved to be more suitable than potato dextrose agar. Once in culture, <i>B. xylophilus</i> grew well feeding on either of two fungus species: <i>Botrytis cinerea</i> or <i>Ophiostoma minus</i>. Growth rates were highest on <i>B. cinerea</i>, the most widely used fungus to maintain lab cultures of <i>B. xylophilus</i>, but <i>O. minus</i> has the advantage of being a natural associate and putative diet of wild populations. There remains a need for better understanding of how to obtain and maintain laboratory populations of this pathogen such that their natural characteristics are maintained.
DOI: 10.6084/m9.figshare.12063480.v3
title: FlowFrontNet Data: Sensor to Flowfront / Dryspot

description: Data from PAM RTM Simulations: Variations in the textile yield changes in the flowfront.<br>Two datasets are published:1. Sensor data (pressure) and corresponding flow front images2. Sensor data (pressure) and corresponding classifications in dryspot and no dryspot.<br>For more information see the FlowFrontNet paper.
DOI: 10.6084/m9.figshare.12063387.v1
title: Methods to obtain and maintain cultures of pinewood nematodes, <i>Bursaphelenchus xylophilus</i>

description: The pinewood nematode <i>Bursaphelenchus xylophilus</i>, native from North America, is the causal agent of the pine wilt disease, being considered one of the most important invasive pests in Eurasian pine forests. The establishment of laboratory isolates of <i>B. xylophilus</i> has been crucial to research on this important pathogen of pine trees. However, studies on the effects of <i>in vitro</i> serial passage on the pathogen evolution, and suitability of standard culture media to the wild populations have been surprisingly few. In the present work, we tested the suitability of different culture media for obtaining <i>B. xylophilus</i> lab populations from dauer larvae that have been isolated from pine sawyer beetles (<i>Monochamus</i> spp.), which serve as their vector. We conducted studies in North America and Portugal. Results showed that adding groundwood (xylem from pine trees) to standard agar medium dramatically improves the survival and growth of wild populations of <i>B. xylophilus</i> in the laboratory. Further, malt extract agar proved to be more suitable than potato dextrose agar. Once in culture, <i>B. xylophilus</i> grew well feeding on either of two fungus species: <i>Botrytis cinerea</i> or <i>Ophiostoma minus</i>. Growth rates were highest on <i>B. cinerea</i>, the most widely used fungus to maintain lab cultures of <i>B. xylophilus</i>, but <i>O. minus</i> has the advantage of being a natural associate and putative diet of wild populations. There remains a need for better understanding of how to obtain and maintain laboratory populations of this pathogen such that their natural characteristics are maintained.
DOI: 10.5522/04/12063333
title: Non-invasive MRI of Blood-Cerebrospinal Fluid Barrier; Scan -rescan study (reproduceability)

description: This is the scan-rescan data set from the work 'Non-invasive MRI of Blood-Cerebrospinal Fluid Barrier Function' (Evans <i>et al., </i>2020, supplementary Figure 7].<br>The same 6 mice were scanned at baseline and then 24 hours later with the BCSFB-ASL technique.<br>The data is in Matlab format. The ASL data is in a 4D array where the first two array elements are the 2D MRI images, the 3rd element is the interleaved tagged and control images together with the number of repetitions (20 repetitions) and the 4th element is the number of inflow times (750, 1500, 4000 and 6500 ms). <br><br>
DOI: 10.6084/m9.figshare.12063480.v4
title: FlowFrontNet Data: Sensor to Flowfront / Dryspot

description: Data from PAM RTM Simulations: Variations in the textile yield changes in the flowfront.<br>Two datasets are published:1. Sensor data (pressure) and corresponding flow front images2. Sensor data (pressure) and corresponding classifications in dryspot and no dryspot.<br>For more information see the FlowFrontNet paper.
DOI: 10.5522/04/12063333.v1
title: Non-invasive MRI of Blood-Cerebrospinal Fluid Barrier; Scan -rescan study (reproduceability)

description: This is the scan-rescan data set from the work 'Non-invasive MRI of Blood-Cerebrospinal Fluid Barrier Function' (Evans <i>et al., </i>2020, supplementary Figure 7].<br>The same 6 mice were scanned at baseline and then 24 hours later with the BCSFB-ASL technique.<br>The data is in Matlab format. The ASL data is in a 4D array where the first two array elements are the 2D MRI images, the 3rd element is the interleaved tagged and control images together with the number of repetitions (20 repetitions) and the 4th element is the number of inflow times (750, 1500, 4000 and 6500 ms). <br><br>