cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.jd523
title: Data from: Survey design for precise fire management conservation targets

description: Common goals of ecological fire management are to sustain biodiversity and
 minimize extinction risk. A novel approach to achieving these goals
 determines the relative proportions of vegetation growth stages
 (equivalent to successional stages, which are categorical representations
 of time since fire) that maximize a biodiversity index. The method
 combines data describing species abundances in each growth stage with
 numerical optimization to define an optimal growth-stage structure which
 provides a conservation-based operational target for managers. However,
 conservation targets derived from growth-stage optimization are likely to
 depend critically on choices regarding input data. There is growing
 interest in use of growth-stage optimization as a basis for fire
 management, thus understanding of how input data influence the outputs is
 crucial. Simulated datasets provide a flexible platform for systematically
 varying aspects of survey design and species inclusions. We used
 artificial data with known properties, and a case-study dataset from
 southeastern Australia, to examine the influence of (i) survey design
 (total number of sites, and their distribution among growth stages) and
 (ii) species inclusions (total number of species and their level of
 specialization) on the precision of conservation targets. Based on our
 findings, we recommend that survey designs for precise estimates would
 ideally involve at least 80 sites, and include at least 80 species.
 Greater numbers of sites and species will yield increasingly reliable
 results, but fewer might be sufficient in some circumstances. An even
 distribution of sites among growth stages was less important than the
 total number of sites, and omission of species is unlikely to have a major
 influence on results as long as several species specialize on each growth
 stage. We highlight the importance of examining the responses of
 individual species to growth stage before feeding survey data into the
 growth-stage optimization black box, and advocate use of a resampling
 procedure to determine the precision of results. Collectively, our
 findings form a reproducible guide to designing ecological surveys that
 yield precise conservation targets through growth-stage optimization, and
 ultimately help sustain biodiversity in fire-prone systems.
description: Simulated-data_Community-ASimulated data for Community A, derived from response functions in Data S1.Simulated-date_Community-BSimulated data for Community B, derived from response functions in Data S1.Case-study-data_faunaBird and ground-dwelling mammal presence-absence data collected at sites in forby forest, Otway Ranges, Victoria, Australia.Case-study-data_floraFlora presence-absence data collected at sites in forby forest, Otway Ranges, Victoria, Australia.README plus case-study-data_species-listDefinitions of species codes in 'Case-study-data_fauna.csv.' and 'Case-study-data_flora.csv'.Case-study-data_species-list.csv
DOI: 10.5061/dryad.2r2j2
title: Data from: Big groups attract bad eggs: brood parasitism correlates with but does not cause cooperative breeding

description: There has been great interest in how complex social behaviours such as
 cooperative breeding evolve and are maintained; however, it is still
 unclear what exact phenomena trigger the transition to cooperative
 breeding. Recent work in birds has suggested a number of factors
 associated with cooperative breeding, including environmental uncertainty
 and brood parasitism. One recent study found a correlation between brood
 parasitism and cooperative breeding, but it examined this relationship
 from a geographically restricted perspective. We investigated evolutionary
 correlations between brood parasitism and cooperative breeding at a global
 scale, including nearly half of all bird species and brood parasites. At a
 global level, we found a strong positive correlation between cooperative
 breeding and brood parasitism. However, when partitioned regionally, we
 found that the global pattern was driven exclusively by relationships
 within Africa and Australia, suggesting that any causal relationship in
 the transition to cooperative breeding is idiosyncratic. In addition, we
 found that even where a correlation was supported, transition rates
 between states were more consistent with cooperative breeding attracting
 brood parasitism, rather than brood parasites driving the evolution of
 cooperative breeding, weakening any hypothesized causal connection.
description: Brood parasitism and
 cooperative breeding datasetsThe following are the
 original dataset, phylogenetic trees, and command code associated with the
 publication: Wells, M.T.; Barker, F.K. 201X. "Big groups attract bad
 eggs: brood parasitism correlates with but does not cause cooperative
 breeding" Animal Behaviour, XX(X) pp. X-X This dataset includes the
 following: the full original data set; the dataset trimmed to regional or
 taxonomic variations; command code for BayesTraits analyses; Phylogenetic
 Maximum Clade Credibility (MCC) trees for full (global) analyses, as well
 as taxon and regional analyses; and code for reflecting and rescaling
 branch length artifacts when producing the MCC trees.Dryad.zip
DOI: 10.17632/s8tmr9zddz.1
title: Precipitation reshapes the impact pathway of nitrogen addition on grassland community stability

description: This dataset supports a thirteen-year field manipulation experiment designed to address a key scientific question: how do altered precipitation regimes modulate the effects of nitrogen deposition on the stability of alpine grassland communities? In the context of global change, nitrogen deposition and precipitation variability interact, yet their combined effects on ecosystem stability—especially in sensitive alpine regions—remain poorly understood. Through a long-term multi-factor experiment, this study reveals that precipitation patterns play a critical "switch" role in mediating nitrogen enrichment effects. The data originate from a long-term experimental platform in the Tianshan alpine grasslands of China and include relevant ecosystem stability metrics with accompanying annotations.
DOI: 10.25921/j46j-ee36
title: Soil Logs, grain size analysis, and water quality measurements at West Fork Hoquiam River Dam Removal and Groundwater Replacement Preliminary Design and Permitting project from 2024-04-29 to 2024-10-15 (NCEI Accession 0306762)

description: Drilling of the exploratory boreholes and installation of the monitoring well was completed by Anderson Environmental Contracting, LLC (AEC), using sonic drilling methods. An Aspect geologist was on-Site to observe the drilling and characterize the samples under the direction of a Washington State-licensed hydrogeologist (LHG). Aspect logged the borehole in general accordance with ASTM International (ASTM) Method D2488, Standard Practice for Description and Identification of Soils (Visual-Manual Procedure). To confirm the soil type of the shallow aquifer, Aspect submitted a representative soil sample to Hayre McElroy & Associates of Redmond, Washington, for laboratory analysis of grain-size distribution.
In addition, water quality samples were taken from the TW-01 to categorize the shallow aquifer water quality at the site. These water quality samples were sent to Fremont Analytical, Inc of Seattle, Washington, for laboratory analysis.
DOI: 10.25921/58n6-y273
title: Water Head and Groundwater Levels at West Fork Hoquiam River Dam Removal and Groundwater Replacement Preliminary Design and Permitting project from 2024-04-29 to 2024-10-15 (NCEI Accession 0306763)

description: Following installation of Monitoring Wells in 2024, each well was equipped with a data logger to document background groundwater levels at the site. This data set contains the compensated water level data. The continuous data is reported in Water above datalogger. The static groundwater level measurements allow for the adjustment of the continuous data.
DOI: 10.5061/dryad.k86k2
title: Data from: Typhonium muaklekense sp. nov. (Araceae) from Thailand

description: Typhonium muaklekense D. Sookchaloem & S. Maneeanakekul is
 described and illustrated. The new species resembles T. roxburghii Schott
 and T. varians Hett. & Sookch. in the spathe. Drawings,
 photographs and a table comparing diagnostic features of T. muaklekense,T.
 roxburghii and T. varians are provided.
description: Habitat of Typhonium
 muaklekense sp. nov.Typhonium muaklekense
 sp. nov. was collected from the Muak Lek district, Saraburi province,
 Thailand. Morphologically, the spathe of this species resembles T.
 roxburghii Schott and T. varians Hett. & Sookch., but the leaves are
 distinctly different by orbicular leaf blades. Critical observation and
 analysis of the specimens indicated that they represent a previously
 unrecognized species that we are naming T. muaklekense based on its
 occurrence in the Muak Lek district, Saraburi province, Thailand.
 Typhonium muaklekense D. Sookchaloem & S. Maneeanakekul is described
 and illustrated. The new species resembles T. roxburghii Schott and T.
 varians Hett. & Sookch. in the spathe. Drawings, photographs and a
 table comparing diagnostic features of T. muaklekense, T. roxburghii and
 T. varians are provided.DSC_0547.JPG
DOI: 10.25921/avbh-jv68
title: Soil logs, grain size analysis, and Pebble Count at West Fork Hoquiam River Dam Removal and Groundwater Replacement Preliminary Design and Permitting project from 2023-09-24 to 2023-09-30 (NCEI Accession 0306764)

description: The data set contains pebble count data for transects located directly downstream of the Hoquiam Dam. The dataset was used to inform hydraulic design (channel restoration, erosion rates, and other key parameters).

Additionally, the data set includes sediment coring and grain size analyses for transects upstream of the dam to verify estimates of sediment thickness
and characterize the grain-size of sediment impounded by the Dam.
DOI: 10.25921/mcn1-tm67
title: Water Head and Groundwater Levels at West Fork Hoquiam River Dam Removal and Groundwater Replacement Preliminary Design and Permitting project from 2024-04-29 to 2024-08-10 (NCEI Accession 0306765)

description: Following installation of Monitoring Wells in 2024, each well was equipped with a data logger to document groundwater levels at the site during. Water levels included in this data set document the shallow aquifer's response to pumping completed at Test Well Nos. 1 and 2.

 This data set contains the compensated water level data. The continuous data is reported in Water above datalogger. The static groundwater level measurements allow for the adjustment of the continuous data.
DOI: 10.5061/dryad.f9154
title: Data from: The complex relationship of exposure to new Plasmodium infections and incidence of clinical malaria in Papua New Guinea

description: The molecular force of blood-stage infection (molFOB) is a quantitative
 surrogate metric for malaria transmission at population level and for
 exposure at individual level. Relationships between molFOB, parasite
 prevalence and clinical incidence were assessed in a
 treatment-to-reinfection cohort, where P.vivax (Pv) hypnozoites were
 eliminated in half the children by primaquine (PQ). Discounting relapses,
 children acquired equal numbers of new P. falciparum (Pf) and Pv
 blood-stage infections/year (Pf-molFOB=0-18, Pv-molFOB=0-23) resulting in
 comparable spatial and temporal patterns in incidence and prevalence of
 infections. Including relapses, Pv-molFOB increased &gt;3-fold
 (relative to PQ-treated children) showing greater heterogeneity at
 individual (Pv-molFOB=0-36) and village levels. Pf- and Pv-molFOB were
 strongly associated with clinical episode risk. Yearly Pf clinical
 incidence rate (IR=0.28) was higher than for Pv (IR=0.12) despite lower
 Pf-molFOB. These relationships between molFOB, clinical incidence and
 parasite prevalence reveal a comparable decline in Pf and Pv transmission
 that is normally hidden by the high burden of Pv relapses.
description: Albinama_eLife_DatabaseData from: The complex relationship of exposure to new Plasmodium infections and incidence of clinical malaria in Papua New Guinea.
DOI: 10.5061/dryad.3ph7k
title: Data from: Frequent and parallel habitat transitions as driver of unbounded radiations in the Cape flora

description: The enormous species richness in the Cape Floristic Region (CFR) of
 Southern Africa is the result of numerous radiations, but the temporal
 progression and possible mechanisms of these radiations are still poorly
 understood. Here, we explore the macroevolutionary dynamics of the
 Restionaceae, that include 340 species which are found in all vegetation
 types in the Cape flora and are ecologically dominant in fynbos. Using an
 almost complete (i.e. 98%) species-level time calibrated phylogeny and
 models of diversification dynamics, we show that species diversification
 is constant through the Cenozoic, with no evidence of an acceleration with
 the onset of the modern winter-wet climate, or a recent density-dependent
 slowdown. Contrary to expectation, species inhabiting the oldest (montane)
 and most extensive (drylands) habitats did not undergo higher
 diversification rates than species in the younger (lowlands) and more
 restricted (wetland) habitats. We show that the rate of habitat
 transitions is more closely related to the speciation rate than to time,
 and that more than a quarter of all speciation events are associated with
 habitat transitions. This suggests that the unbounded Restionaceae
 diversification resulted from numerous, parallel, habitat shifts, rather
 than persistence in an habitat stimulating speciation. We speculate that
 this could be one of the mechanisms resulting in the hyper-diverse Cape
 flora.
description: Chronogram (Maximum
 Clade Credibility Tree) of RestionaceaeMolecular Dating using
 BEAST of African RestionaceaeMCC_AFRICANRESTIOS.treHabitat coding of African Restionaceae0: coastal wetlands; 1: montane wetlands; 2: coastal drylands; 3: montane drylandsWD_MC_fit_Discrete.txtBayesian consensus tree from MrBayesConsensus tree from the MrBayes analyses of African RestionaceaeCHLOR_FINAL_NODUPLIC.con.tre1000 posterior trees from the molecular dating analysis of African RestionaceaeThe set of 1,000 trees from the posterior distribution of the BEAST analysis used for habitat reconstructions and models of evolutionCHLOR_FINAL_NODUPLIC_1000.trees.zip
DOI: 10.5061/dryad.74839
title: Data from: Quantifying the effects of temperature on mosquito and parasite traits that determine the transmission potential of human malaria

description: Malaria transmission is known to be strongly impacted by temperature.
 Current understanding of how temperature affects mosquito and parasite
 life history traits derives from a limited number of empirical studies.
 These studies, some dating back to the early part of last century, are
 often poorly controlled, have limited replication, explore a narrow range
 of temperatures and use a mixture of parasite and mosquito species. Here,
 we use a single pairing of the Asian mosquito vector, Anopheles stephensi
 and the human malaria parasite, Plasmodium falciparum to conduct a
 comprehensive evaluation of the thermal performance curves of a range of
 mosquito and parasite traits relevant to transmission. We show biting
 rate, adult mortality rate, parasite development rate and vector
 competence all to be temperature sensitive. Importantly, we find
 qualitative and quantitative differences to the assumed
 temperature-dependent relationships. To explore the overall implications
 of temperature for transmission we first use a standard model of relative
 vectorial capacity. This approach suggests a temperature optimum for
 transmission of 29ºC, with minimum and maximum temperatures of 12 and
 38ºC, respectively. However, the robustness of the vectorial capacity
 approach is challenged by the fact that the empirical data violate several
 of the model’s simplifying assumptions. Accordingly, we present an
 alternative model of relative force of infection that better captures the
 observed biology of the vector-parasite interaction. This model suggests a
 temperature optimum for transmission of 26ºC, with a minimum and maximum
 of 17 and 35ºC, respectively. The differences between the models lead to
 potentially divergent predictions for the potential impacts of current and
 future climate change on malaria transmission. The study provides a
 framework for more detailed, system-specific studies that are essential to
 develop an improved understanding on the effects of temperature on malaria
 transmission.
description: Code for survival
 distributions, creation of Figure 2Script used with
 accompanying datasets to derive survival distributions, infectious
 distributions, and to create Figure 2.PBiol.R.Code.RNumerical Data Underlying Figure CreationSupplement that shows numerical data for figure creation throughout manuscript.PLoS.Biology.DataFigures.Supplemental.xlsxSporogony dataSporozoite prevalence over time by replicate cup for each temperature and experimental block.infectious.data.csvSurvival dataSurvival data for each replicate cup in each temperature and experimental block.temp.surv.csv
DOI: 10.5061/dryad.55678
title: Data from: MoO2 nanosheets embedded in amorphous carbon matrix for sodium-ion batteries

description: MoO2 nanosheets embedded in the amorphous carbon matrix (MoO2/C) are
 successfully synthesized via a facile hydrothermal method and investigated
 as an anode for sodium-ion batteries. Because of the efficient ion
 transport channels and good volume change accommodation, MoO2/C delivers a
 discharge/charge capacity of 367.8/367.0 mAh g−1 with high coulombic
 efficiency (99.4%) after 100 cycles at a current density of 50 mA g−1.
description: READMERSOS-170892.rar
DOI: 10.5061/dryad.qc7n5
title: Data from: Naturally acquired antibody responses to more than 300 Plasmodium vivax proteins in three geographic regions

description: Plasmodium vivax remains an important cause of malaria in South America
 and the Asia-Pacific. Naturally acquired antibody responses against
 multiple P. vivax proteins have been described in numerous countries,
 however, direct comparison of these responses has been difficult with
 different methodologies employed. We measured antibody responses against
 307 P. vivax proteins at the time of P. vivax infection, and at 2–3 later
 time-points in three countries. We observed that seropositivity rates at
 the time of infection were highest in Thailand, followed by Brazil then
 PNG, reflecting the level of antigenic input. The majority of
 sero-reactive antigens in all sites induced short-lived antibody responses
 with estimated half-lives of less than 6 months, although there was a
 trend towards longer-lived responses in PNG children. Despite these
 differences, IgG seropositivity rates, magnitude and longevity were highly
 and significantly rank-correlated between the different regions,
 suggesting such features are reflective of the individual protein.
description: Thailand_AlphaScreen_dataAlphaScreen measurements of antibody response in longitudinal cohort from Thailand.Brazil_AlphaScreen_dataAlphaScreen measurements of antibody response in longitudinal cohort from Brazil.PNG_AlphaScreen_dataAlphaScreen measurements of antibody response in longitudinal cohort from Papua New Guinea.Pv_Protein_InformationDescription of P. vivax proteins.Three_site_parametersEstimated parameters for the antibody dynamics in Thailand, Brazil and Papua New Guinea.
DOI: 10.5061/dryad.0pn79
title: Data from: Widespread increases in iron concentration in European and North American freshwaters

description: Recent reports of increasing iron (Fe) concentrations in freshwaters are
 of concern, given the fundamental role of Fe in biogeochemical processes.
 Still, little is known about the frequency and geographical distribution
 of Fe trends, or about the underlying drivers. We analyzed temporal trends
 of Fe concentrations across 340 water bodies distributed over 10 countries
 in northern Europe and North America in order to gain a clearer
 understanding of where, to what extent, and why Fe concentrations are on
 the rise. We found that Fe concentrations have significantly increased in
 28% of sites, and decreased in 4%, with most positive trends located in
 northern Europe. Regions with rising Fe concentrations tend to coincide
 with those with organic carbon (OC) increases. Hence, Fe and OC increases
 may not be directly mechanistically linked, but may nevertheless be
 responding to common regional-scale drivers such as declining sulfur
 deposition or hydrological changes. A role of hydrological factors was
 supported by covarying trends in Fe and dissolved silica, as these
 elements tend to stem from similar soil depths. A positive relationship
 between Fe increases and conifer cover suggests that changing land-use and
 expanded forestry could have contributed to enhanced Fe export, although
 increases were also observed in non-forested areas. We conclude that the
 phenomenon of increasing Fe concentrations is widespread, especially in
 northern Europe, with potentially significant implications for wider
 ecosystem biogeochemistry, and for the current browning of freshwaters.
description: Fe
 TrendsThe data file
 (FeTrends.xlxs) contains data for the 340 water bodies (headwater streams,
 higher-order streams, lakes and river mouths) included in the Fe trends
 study (Björnerås et al. 2017). The data has been collected from various
 monitoring programs and initiatives in 10 countries and include time
 series of iron (Fe), organic carbon (OC), silica (Si) and sulfate (SO4)
 concentrations in surface waters spanning from 1990 to 2013. Catchment
 variables, such as catchment size and land-use, are also included in the
 dataset, as well as climate data (precipitation and air
 temperature).FeTrends.xlsx