cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/rnn78wj7j9
title: Focal HIFU in localized prostate cancer

description: We prospectively enrolled in the study all men diagnosed with localized prostate cancer who accepted FT as an alternative of whole gland treatment (radical prostatectomy or external beam radiotherapy) or declined active surveillance protocol. Inclusion criteria were a histologically biopsy-proven PC, clinically stage ≤T2, age ≥45 years, ≥5 years of life expectancy, grading groups ≤3, and subtotal gland ablation. Exclusion criteria were non-adenocarcinoma histology, grading group ≥4, metastatic/nodal disease or extracapsular extension or seminal vesicle invasion at imaging, active rectal diseases, radio-recurrent PC, whole gland ablation, and hormonal treatment. Patients with lesions located out of the anterior-posterior distance of the device (&gt;40 mm) were also excluded because an efficient treatment could not be achieved.
DOI: 10.6084/m9.figshare.14226572.v1
title: Data: erp and dip files from GO/NoGO task in children with ADHD and TDC

description: Data from 31 subjects (15 ADHD and 16 TDC) recorded with ASA EEG/ERP System (ANT Software, the Netherlands) with 128 Ag/AgCI sintered ring electrodes embedded in a active-shield cap (10-20 system) and shielded co-axial cables. Off-line data treatment with EEGlab software (Delorme & Makeig, 2004) and in house MATLAB-based tools (Cheron et al. 2014). <br><br>More details are available in the related publication: <b>Zarka D, Cebolla A-M, Cevallos C, Palmero-Soler E, Dan B, Cheron G.</b> Caudate and cerebellar involvement in altered P2 and P3 components of GO/NoGO evoked potentials in children with attention-deficit/hyperactivity disorder. <i>Eur J Neurosci. 2021 In press</i>.
DOI: 10.6084/m9.figshare.22723901.v1
title: Woody plant along the elevation gradient of Mt. Meru, Tanzania

description: This is the dataset of woody plant species richness, tree height, and floristic composition of woody plants along an elevation gradient on the eastern slope of Mount Meru, Tanzania. This vegetation data were collected on 44 study plots systematically placed along five transects spanning an elevational range of 1800 m a.s.l (i.e. from 1600 to 3400 m a.s.l.). The dataset is useful in providing insight into plant adaptation to the local environment. Consequently, the dataset will enhance local understanding of important factors and variables for the woody plant distribution. Further, the dataset can also promote collaborations among researchers who would wish to combine and extend their data for further analysis to gain a broader understanding of the phenomenon on a bigger spatial scale. We believe that this data will contribute to the existing global dataset of woody plant distribution along the elevation gradient of afro-tropical mountains. Last but not least, this dataset will act as the baseline information for monitoring the effect of global climate change on woody plant distribution.
DOI: 10.6084/m9.figshare.24312166.v1
title: Multiscale Simulation of polytetrafluoroethylene gasification using thermal plasma: Mechanism investigation with experimental validation

description: This repository contains the source data that support the findings of "Multiscale Simulation of polytetrafluoroethylene gasification using thermal plasma: mechanism investigation with experimental validation".
DOI: 10.6084/m9.figshare.7717640.v3
title: Data from: Recovery of amphibian, reptile, bird and mammal diversity during secondary forest succession in the tropics. Oikos

description: This is the data related with the manuscript "Recovery of amphibian, reptile, bird and mammal diversity during secondary forest succession in the tropics", submitted to Oikos.<br>The files include code of the analysis and figures. This code was created by Orlando Acevedo-Charry, based in several "bloggers" and resource online, and with the encouragement of Zuania Colon and advise of Mitch Aide. Thank you so much!! There are 16 scripts for different analysis-figures. For each script there is included the packages used. Each script will run with the file "MainData.csv", but the "figure script" run with the results of the bootstraps (csv). Have fun!<br>
DOI: 10.6084/m9.figshare.8329967.v2
title: A Bayesian Nonparametric Mixture Measurement Error Model With Application to Spatial Density Estimation Using Mobile Positioning Data With Multi-Accuracy and Multi-Coverage

description: The development of mobile network technologies has made it possible to collect location data of mobile devices through various positioning technologies. The location data can be used to estimate the spatial density of mobile devices, which in turn can be used by mobile service providers to plan for network capacity improvements. The two most prevalent positioning technologies are the assisted global positioning system (AGPS) and cell tower triangulation (CTT) methods. AGPS data provide more accurate location information than CTT data but can cover only a fraction of mobile devices, while CTT data can cover all mobile devices. Motivated by this problem, we propose a Bayesian nonparametric mixture measurement error model to estimate the spatial density function by integrating both noise-free data (i.e., AGPS data) and data contaminated with measurement errors (i.e., CTT data). The proposed model estimates the true latent locations from contaminated data, and the estimated latent locations, combined with noise-free data, are used to infer the model parameters. We model the true density function using a Dirichlet process (DP) mixture model with a bivariate beta distribution for the mixture kernel and a DP prior for the mixing distribution. The use of bivariate beta distributions for the mixture kernel allows the density function to have various shapes with a bounded support. Moreover, the use of a DP prior for the mixing distribution allows the number of mixture components to be determined automatically without being specified in advance. Therefore, the proposed model is very flexible. We demonstrate the effective performance of the proposed model via simulated and real-data examples.
DOI: 10.17632/r2j7b29pp9
title: Visualization and Quantification of Skin Inflammation using Reflectance Confocal Microscopy and Image Segmentation

description: This is the raw data corresponding to the findings reported in our manuscript. The images at each time point were collected using a reflectance confocal microscope and the quantification was performed using CellProfiler. Further details are available in the materials and methods section of the manuscript.
DOI: 10.6084/m9.figshare.29064683.v1
title: Predicting the Potential Distribution of <i>Eriochloa villosa</i> in Spring Maize Fields of Northeast China Using MaxEnt Model and R Language, and Early Warning Research on Climate Change Response

description: It contains the original data and model output results in my pape
DOI: 10.17632/bkjpzttsmc
title: Appendix IDEOM PsA Delphi Survey

description: Supplementary material for the manuscript "Measuring Psoriatic Arthritis Symptoms, A Core Domain in Psoriasis Clinical Trials ".
DOI: 10.17632/zmjp338k5h
title: Data for: An efficient Balanced Teaching-Learning-Based Optimization Algorithm with Individual Restarting Strategy for Solving Global Optimization Problem

description: The attachment includes: 1- BTLBO algorithm code. 2- Codes for running BTLBO. 3- Input data 4-IEEE CEC14 benchmark suits.
DOI: 10.6084/m9.figshare.22687891.v1
title: Biogeographical Districts of the Caatinga Dominion: A Proposal Based on Geomorphology and Endemism - Supplementary data

description: These are the supplementary data to the article "Biogeographical Districts of the Caatinga Dominion: A Proposal Based on Geomorphology and Endemism", published in The Botanical Review. Our study proposes a subdivision of the Caatinga Dominion into biogeographical Provinces, Subprovinces and Districts, and propose an inedited geomorphological and biogeographical map to the whole Caatinga.We provide here the geomorphological map and the shapefile used to produce this map to allow readers to create their own maps based on our proposal. We also provide our biogeographical map in high resolution (in JPEG and PDF formats, with and without the Brejos Nordestinos de Altitude enclaves and with and without the borders of the Brazilian states) for download. The shapefiles used to create our biogeographical map is also available here, with the limits of the proposed biogeographical districts.The mapping of the enclaves of humid forests within Caatinga (Brejos Nordestinos de Altitude district) is a research still in progress by Taynara Rabelo-Costa. She kindly provided a preliminary version of her mapping to allow readers of this article to have an overview of the distribution of these enclaves, but a final version of her map is still being produced and this version should be considered non-final when our study is released. We also provide here a spreadsheet with 329 endemic Caatinga species recording in which district each species is known. Some endemic species are widespread inside Caatinga, while others are restricted to one or few districts.We stimulate biogeographers and those mapping biodiversity in Caatinga to create their own maps, for their own study group, based on our proposal.
DOI: 10.6084/m9.figshare.27522759.v1
title: adverse childhood experiences ad suicide (structured Equational Modeling)

description: Objectives: Major Depressive Disorder (MDD) is a severe and prevalent psychiatric disorder around the world. Suicidal ideation is one of the hallmark symptoms of this disorder. Multiple studies have investigated the role of adverse childhood experiences on the occurrence of suicidal ideation in adulthood. Nevertheless, research examining the underlying mechanisms that mediate this relationship is limited. Accordingly, the present study aimed to investigate whether the relationship between adverse childhood experiences and suicidal ideation is atemporally mediated by emotional reactivity, and probabilistic and reinforcement learning (PRL) in Iranian patients with MDD. Method: Participants included 201 inpatients with MDD who were hospitalized in psychiatric wards of various hospitals in Shiraz, Iran. Participants were selected through the convenient sampling method. The data were collected using the Probabilistic Reward Task, Emotional Reactivity Scale, Beck Scale of Suicidal Ideation, and the Modified Adverse Childhood Experiences – International Questionnaire. Collected data were analyzed using Pearson’s correlation test and structural equation modeling in SPSS and AMOS 26. Results: Adverse childhood experiences had a direct and significant relationship with suicidal ideation (p &lt; .001). Moreover, emotional reactivity and PRL significantly mediated the relationship between adverse childhood experiences and suicidal ideation. Conclusion: Our findings showed that multiple factors including adverse childhood experiences, emotional reactivity, and PRL may have a role in the occurrence of suicidal ideation in patients with MDD. Accordingly, addressing these factors in therapeutic plans should be taken into consideration.
DOI: 10.17632/ttszkr6xb4
title: Digital Divide Dataset

description: WDI Dataset
DOI: 10.6084/m9.figshare.14927256.v1
title: Geologi Regional Pulau Karimunjawa dan Sekitarnya

description: A brief description of the geology of Karimunjawa Island and its surroundings, sourced from secondary data from regional geological maps
DOI: 10.6084/m9.figshare.22691119.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.28788998.v3
title: Dataset for G2c subtype S protein enhances the virulence of G2a subtype PEDV

description: This is a dataset for G2c subtype S protein enhances the virulence of G2a subtype PEDV.
DOI: 10.6084/m9.figshare.8950859.v2
title: Data from "Phylogenomics provides robust support for a two-domains tree of life"

description: Data associated with the paper "Phylogenomics provides robust support for a two-domains tree of life" (including sequence alignments and Newick tree files).
DOI: 10.17632/srwxbk8gxy
title: Data for: The effect of second phase la0.67tio2.87 on the phase structure and impedance spectroscopy of La2Ti2(1 + x)O7 piezoelectric ceramics

description: The impedance spetra of La2Ti2(1 + x)O7 ceramics
DOI: 10.17632/vw8dbhr63z
title: Polymol: A general program for the calculation of ground-state wave functions of polymers

description: Title of program: POLYMOL Catalogue Id: ABYA_v1_0 Nature of problem POLYMOL is an SCF LCGO program, designed for computing the all- electrons band structure of periodic polymers. The program handles only closed shells. Versions of this program held in the CPC repository in Mendeley Data ABYA_v1_0; POLYMOL; 10.1016/0010-4655(70)90013-5 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.19383707.v4
title: Input Files

description: input.vcf and pntest_variants.txt (genotype point estimates) at 5,972 SNPs<br>cz_16s.nexus mtDNA 16s nexus
DOI: 10.6084/m9.figshare.28945064.v3
title: Source Data of "Theoretical Framework for Confined Ion Transport in Two-dimensional Nanochannels"

description: Source Data of Figures 1~4 in Main Text of Article "Theoretical Framework for Confined Ion Transport in Two-dimensional Nanochannels".
DOI: 10.17632/xycmhhcr5h
title: Calculation of atomic integrals between relativistic functions by means of algebraic methods

description: We propose the use of Sturmian basis set for relativistic atomic structure calculations. We describe a numerically stable algebraic calculation of one- and two-particle radial integrals. The method is illustrated on the basis set independent calculation of energies, electric dipole moments, hyperfine integrals and parity non-conserving (PNC) amplitude for Cs in Dirac-Hartree-Fock approximation with frozen core orbitals. The previously reported results for electric dipole moments and PNC amplitude are found to be strongly basis dependent.
DOI: 10.6084/m9.figshare.5110732.v3
title: Fraxinus excelsior chorology

description: Distribution map of European ash (<i>Fraxinus excelsior</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn"). <br>Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com). <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.17632/w63fcbf2yd
title: Results - Viability of Crowd Logistics in Short Food Supply Chains

description: Dataset of results for a hybrid simulation study (ABS + DES) on the viability of crowd logistics concepts in short food supply chains.
The dataset contains the rsults for four different experiment settings. In T1 the participation willingness (to participate as an OD) of the simulation was varied. In T2, the participation and the preference for deliveries was varied. As for T3, the preference for regional food and participation willingness was examined. In T4 the effects of non-stop market opening times (24/7) was observed. All settings were explroed for an urban and a rural population setting based on areas in Bavaria, Germany. In Scenario 1 no crowd logistics activities were allowed (baseline scenario). In Scenario 2 only shoppers at outlets were allowed to participate as ODs, whereas in Scenario 3 also non-shoppers could choose to participate as ODs.
DOI: 10.6084/m9.figshare.1492989.v1
title: Left Atrial Segmentation Challenge 2013: MRI testing

description: This fileset is associated with the Left Atrial Segmentation Challenge 2013 (LASC'13). LASC'13 was part of the STACOM'13 workshop, held in conjunction with MICCAI'13. Seven international research groups, comprising 11 algorithms, participated in the challenge. For a detailed report, please refer to: Tobon-Gomez C, Geers AJ, Peters, J, Weese J, Pinto K, Karim R, Ammar M, Daoudi A, Margeta J, Sandoval Z, Stender B, Zheng Y, Zuluaga, MA, Betancur J, Ayache N, Chikh MA, Dillenseger J-L, Kelm BM, Mahmoudi S, Ourselin S, Schlaefer A, Schaeffter T, Razavi R, Rhode KS. Benchmark for Algorithms Segmenting the Left Atrium From 3D CT and MRI Datasets. IEEE Transactions on Medical Imaging, 34(7):1460–1473, 2015.The challenge is also featured on http://www.cardiacatlas.org/challenges/left-atrium-segmentation-challenge/ The data and code of the challenge have been made publicly available to serve as a benchmark for left atrial segmentation algorithms. Code is hosted on https://github.com/catactg/lasc Feel free to contact us with any questions. This fileset consists of 20 MRI datasets for testing segmentation algorithms. Included are the ground truth segmentation and helper files for standardisation. clippointid1.csv: PointID of clvein1.vtp at which to clip PV1 clippointid2.csv: PointID of clvein2.vtp at which to clip PV2 clippointid3.csv: PointID of clvein3.vtp at which to clip PV3 clippointid4.csv: PointID of clvein4.vtp at which to clip PV4 clvein1.vtp: Centerline of PV1 clvein2.vtp: Centerline of PV2 clvein3.vtp: Centerline of PV3 clvein4.vtp: Centerline of PV4 gt_noclip_mesh.vtp: Surface mesh extracted from gt_noclip.mhd gt_noclip.mhd + gt_noclip.zraw: Labeled image representation of GT gt_std_mesh.vtp: Surface mesh after standardisation gt_std.mhd + gt_std.zraw: Image representation of GT with labels copied from gt_std_mesh.vtp image.mhd + image.raw: Image to segment mitralplane.csv: Point, normal, and insideout flag describing mitral plane location
DOI: 10.6084/m9.figshare.20480703.v2
title: MASTER Data Sheet_April 2022.xlsx

description: Excel sheet containing swimming kinematics data from 6 juvenile and six neonate epaulette sharks. See Porter et al, 2022 for descriptions of all variables.
DOI: 10.6084/m9.figshare.28902263.v1
title: Data of the Effects of Perceived Sustainability Values on Sports Event Participation Intentions.xlsx

description: Sports events can promote local economic development, foster social and cultural exchange, and optimize the natural environment. Therefore, it is crucial to emphasize the sustainable development value of sports events to enhance people's willingness to participate. This study employs structural equation modeling to analyze college students' perceptions and attitudes, as they represent a key driving force for future development. The findings indicate that perceived economic, social, and environmental values of sports events contribute to enhancing individuals' sense of responsibility and well-being, which in turn promotes their intention to participate in sports events. This research provides valuable theoretical and practical insights for continuously enhancing the vibrancy of sports events. (PECV, Perceived economic value; PSV, Perceived social value; PENV, Perceived environmental value; SOR, Sense of responsibility; SOW, Sense of well-being; ITP, Intention to participate.)
DOI: 10.6084/m9.figshare.17109143.v3
title: DATA for ''Lake salinization drives consistent losses of zooplankton abundance and diversity across coordinated mesocosm experiments'' DOI: org/10.1002/lol2.10239

description: NOTE:<br>-This data set includes taxon-specific trait information only.<br>-body length = mm ; body mass = mg (see Appendix/Metadata of the paper for additional info)<br>-Environmental and abundance data reported in this paper can be found here: https://doi.org/10.5683/SP3/BIDMCI-Contact info: mphebert4@gmail.com<br><br>ABSTRACT:<br>Human-induced salinization increasingly threatens inland waters; yet we know little about the multifaceted response of lake communities to salt contamination. By conducting a coordinated experiment of lake salinization across 16 sites in North America and Europe, we quantified the response of zooplankton abundance and (taxonomic and functional) community structure to a broad gradient of environmentally relevant chloride concentrations, ranging from 4 to ca.1400 mgCl/L. We found that crustaceans were distinctly more sensitive to elevated chloride than rotifers; yet rotifers did not show compensatory abundance increases in response to crustacean declines. For crustaceans, our among-lake comparisons indicate: (1) highly consistent decreases in abundance and taxon richness with salinity; (2) widespread chloride sensitivity across major taxonomic groups (Cladocera, Cyclopoida, and Calanoida); and (3) weaker loss of functional than taxonomic diversity. Overall, our study demonstrates that aggregate properties of zooplankton communities can be affected at chloride concentrations relevant to anthropogenic salinization in lakes.<br>
DOI: 10.6084/m9.figshare.19603378.v2
title: Meta data_Zhang et al. 2022.xlsx

description: Enhanced nitrogen deposition has altered forest nitrogen cycling across China, which also affect soil greenhouse gas emissions. This dataset demonstrated the responses of methane uptake and nitrous oxide emission to nitrogen enhanced deposition in forest soils in China and outside of China.
DOI: 10.6084/m9.figshare.28787744.v1
title: RAW Dataset

description: This research investigated combining electroacupuncture (EA) with acupoint-delivered subhypnotic dexmedetomidine (DEX) as a novel approach for treating inflammatory pain