cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive7050.20241212.9.2
title: Methanothrix thermoacetophila Nozhevnikova and Chudina 1988

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7053.20241212.9.2
title: Methanomethylovorans hollandica Lomans et al. 2004

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7055.20241212.9.2
title: Methanosalsum zhilinae (Mathrani et al. 1988) Boone and Baker 2002

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.14258052
title: Whole genome re-sequencing workshop data: fastq files and reference genomes

description:  

Whole genome re-sequencing data analysis workshop datasets. The files are necessary inputs for the workshop in https://github.com/PoODL-CES/Genomics_learning_workshop

Tools and scripts listed in the https://github.com/PoODL-CES/Genomics_learning_workshop repository.

 

These are subsampled fastq files from:Khan, A., Patel, K., Shukla, H., Viswanathan, A., van der Valk, T., Borthakur, U., Nigam, P., Zachariah, A., Jhala, Y.V., Kardos, M. and Ramakrishnan, U., 2021. Genomic evidence for inbreeding depression and purging of deleterious genetic variation in Indian tigers. Proceedings of the National Academy of Sciences, 118(49), p.e2023018118.

The reference genome is from :

Shukla, H., Suryamohan, K., Khan, A., Mohan, K., Perumal, R.C., Mathew, O.K., Menon, R., Dixon, M.D., Muraleedharan, M., Kuriakose, B. and Michael, S., 2023. Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex predation. GigaScience, 12, p.giac112.

 

The reference has been indexed using:

bwa index GCA_021130815.1_PanTigT.MC.v3_genomic.fna
DOI: 10.6084/m9.figshare.28748267
title: Native PAGE results, Supplementary Fig. 4b,c

description: This native PAGE assay is to evalute the photo-induced concentration changes of the single-SE motifs (dimer or monomer) under UV and visible light (Vis), Supplementary Fig. 4b,cUnder 'PAGE' folder, there are three sets of the imaged gel sheets (n = 3), one of which appears in Supplementary Fig. 4b.These images were analyzed by imageJ to generate .csv files ('*_new.csv') that contain the measured band fluorescence intensities (n = 3) for different azobenzene insertion sites (1x7, 3x5, 2x1x5) with control (no azo).Python script ('*.py') generates the bar plots of the evaluated concentrations for the monomer and dimers.
DOI: 10.6084/m9.figshare.28749197
title: ST4_H3N2_pan99.fasta

description: Human lung adenocarcinoma cells (A549) and human monocytic cells (THP-1) were infected with H3N23 influenza virus A virus. Transcriptome analysis were performed by next generation RNA sequencing of three replicates each for infected A549 cells at 4, 8 and 24h p.i. and infected THP-1 cells at 4, 8, 12 and 24h p.i., and corresponding set of non-infected controls. The sequence of the virus used for infections is provided here.
DOI: 10.13145/bacdive7057.20241212.9.2
title: Methanimicrococcus blatticola Sprenger et al. 2000

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7058.20241212.9.2
title: Methanococcoides methylutens Sowers and Ferry 1985

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7060.20241212.9.2
title: Methanococcoides burtonii Franzmann et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7061.20241212.9.2
title: Methanococcoides alaskense Singh et al. 2005

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7062.20241212.9.2
title: Methanohalobium evestigatum Zhilina and Zavarzin 1988

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7064.20241212.9.2
title: Methanohalophilus halophilus (Zhilina 1984) Wilharm et al. 1991

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7068.20241212.9.2
title: Methanohalophilus mahii Paterek and Smith 1988

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive7074.20241212.9.2
title: Methanohalophilus portucalensis Boone et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.6084/m9.figshare.26739192
title: Additional file 8 of The cacao gene atlas: a transcriptome developmental atlas reveals highly tissue-specific and dynamically-regulated gene networks in Theobroma cacao L

description: Additional File 8: RNA Quality Values
DOI: 10.6084/m9.figshare.26739192.v1
title: Additional file 8 of The cacao gene atlas: a transcriptome developmental atlas reveals highly tissue-specific and dynamically-regulated gene networks in Theobroma cacao L

description: Additional File 8: RNA Quality Values
DOI: 10.6084/m9.figshare.26739195
title: Additional file 9 of The cacao gene atlas: a transcriptome developmental atlas reveals highly tissue-specific and dynamically-regulated gene networks in Theobroma cacao L

description: Additional File 9: Read Count Statistics
DOI: 10.6084/m9.figshare.26739195.v1
title: Additional file 9 of The cacao gene atlas: a transcriptome developmental atlas reveals highly tissue-specific and dynamically-regulated gene networks in Theobroma cacao L

description: Additional File 9: Read Count Statistics
DOI: 10.6084/m9.figshare.26739201
title: Additional file 11 of The cacao gene atlas: a transcriptome developmental atlas reveals highly tissue-specific and dynamically-regulated gene networks in Theobroma cacao L

description: Additional File 11: Gene Annotations and RBBH
DOI: 10.6084/m9.figshare.26739201.v1
title: Additional file 11 of The cacao gene atlas: a transcriptome developmental atlas reveals highly tissue-specific and dynamically-regulated gene networks in Theobroma cacao L

description: Additional File 11: Gene Annotations and RBBH
DOI: 10.6084/m9.figshare.26739204.v1
title: Additional file 12 of The cacao gene atlas: a transcriptome developmental atlas reveals highly tissue-specific and dynamically-regulated gene networks in Theobroma cacao L

description: Additional File 12: Quantseq RNA-seq processing software commands and parameters
DOI: 10.6084/m9.figshare.26739204
title: Additional file 12 of The cacao gene atlas: a transcriptome developmental atlas reveals highly tissue-specific and dynamically-regulated gene networks in Theobroma cacao L

description: Additional File 12: Quantseq RNA-seq processing software commands and parameters
DOI: 10.6084/m9.figshare.26112919
title: Additional file 1 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.26112919.v1
title: Additional file 1 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.26113078
title: Additional file 2 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26113078.v1
title: Additional file 2 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26739219
title: Additional file 3 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.26739219.v1
title: Additional file 3 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.26739222
title: Additional file 4 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 4.
DOI: 10.6084/m9.figshare.26739222.v1
title: Additional file 4 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 4.
DOI: 10.6084/m9.figshare.26739225
title: Additional file 5 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 5.
DOI: 10.6084/m9.figshare.26739225.v1
title: Additional file 5 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 5.
DOI: 10.6084/m9.figshare.26739228
title: Additional file 6 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 6.
DOI: 10.6084/m9.figshare.26739228.v1
title: Additional file 6 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 6.
DOI: 10.6084/m9.figshare.26739231
title: Additional file 7 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 7.
DOI: 10.6084/m9.figshare.26739231.v1
title: Additional file 7 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 7.
DOI: 10.6084/m9.figshare.26739234
title: Additional file 8 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 8.
DOI: 10.6084/m9.figshare.26739234.v1
title: Additional file 8 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 8.
DOI: 10.6084/m9.figshare.26739237
title: Additional file 9 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 9.
DOI: 10.6084/m9.figshare.26739237.v1
title: Additional file 9 of Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote

description: Supplementary Material 9.
DOI: 10.6084/m9.figshare.26113081
title: Additional file 2 of Genome-wide identification of JAZ gene family members in autotetraploid cultivated alfalfa (Medicago sativa subsp. sativa) and expression analysis under salt stress

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26113081.v1
title: Additional file 2 of Genome-wide identification of JAZ gene family members in autotetraploid cultivated alfalfa (Medicago sativa subsp. sativa) and expression analysis under salt stress

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26739240
title: Additional file 3 of Genome-wide identification of JAZ gene family members in autotetraploid cultivated alfalfa (Medicago sativa subsp. sativa) and expression analysis under salt stress

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26739240.v1
title: Additional file 3 of Genome-wide identification of JAZ gene family members in autotetraploid cultivated alfalfa (Medicago sativa subsp. sativa) and expression analysis under salt stress

description: Supplementary Material 3
DOI: 10.6073/pasta/2412a5415242a5141b8587d7d978b084
title: High-frequency time series of inorganic carbon chemistry in the Upper Clark Fork River (Montana, USA) during the summer of 2021.

description: This dataset was collected in the Upper Clark Fork River, MT from July to August in 2021. The dataset contains high-frequency measurements of dissolved oxygen, alkalinity, partial pressure of carbon dioxide and other environmental variables.
DOI: 10.25549/independent-c69-2784
title: Gates v. Police Commission [14], 114. Transcript of 1991-05-07 proceedings, 1991-05-10

description: Exhibit (pp. 002092-002230): Chief Gates v. Police Commission. Appellate documents, volume 3, 1991 May 1-9 [folder 2 of 3]. Superior Court of the State of California for the County of Los Angeles, Department no. 85, Hon. Ronald M. Sohigian, Judge. Daryl F. Gates, etc., plaintiff, v. Board of Police Commissioners, etc., et al., defendants. No. BS 00 789. Related to case no. BC 025 356. Transcript of 1991 May 7 proceedings, transcribed 1991 May 10. PART OF A SERIES: The series consists of miscellaneous source materials that were collected and analyzed over the course of the Independent Commission's investigation. Included are the following: article clippings pertaining to the Rodney King incident; legal materials related to the Gates v. Board of Los Angeles Police Commissioners case, including appellate documents, court transcripts, preliminary injunctions, and briefs; black-and-white photographs; essays and articles related to police misconduct; issues of The Thin Blue Line, the Los Angeles Police Protective League's monthly publication, and Perspectives on Policing, a newsletter published by the United States Department of Justice; materials regarding policing issues in other major United States cities, including commission reports and Pate and Hamilton's book The Big Six: Policing America's Largest Cities; supplemental materials and appendices to the Independent Commission's report; requests for copies of the Commission report; transcripts from public hearings conducted by members of the Commission; and instructional materials related to the Video Incident Capture System, a video camera system that provides video and audio records of police officers' activities while on patrol.
DOI: 10.15468/dl.2yhbde
title: Occurrence Download

description: A dataset containing 16046 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ochthoeca cinnamomeiventris (Lafresnaye, 1843)"
 ]
}

 The dataset includes 16046 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037535-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtdzzc
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Notholaena neglecta Maxon"
 ]
}

 The dataset includes 43 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002843-150316153013904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-2725
title: Gates v. Police Commission [14], 114. Transcript of 1991-05-07 proceedings, 1991-05-10

description: Exhibit (pp. 002092-002230): Chief Gates v. Police Commission. Appellate documents, volume 3, 1991 May 1-9 [folder 2 of 3]. Superior Court of the State of California for the County of Los Angeles, Department no. 85, Hon. Ronald M. Sohigian, Judge. Daryl F. Gates, etc., plaintiff, v. Board of Police Commissioners, etc., et al., defendants. No. BS 00 789. Related to case no. BC 025 356. Transcript of 1991 May 7 proceedings, transcribed 1991 May 10. PART OF A SERIES: The series consists of miscellaneous source materials that were collected and analyzed over the course of the Independent Commission's investigation. Included are the following: article clippings pertaining to the Rodney King incident; legal materials related to the Gates v. Board of Los Angeles Police Commissioners case, including appellate documents, court transcripts, preliminary injunctions, and briefs; black-and-white photographs; essays and articles related to police misconduct; issues of The Thin Blue Line, the Los Angeles Police Protective League's monthly publication, and Perspectives on Policing, a newsletter published by the United States Department of Justice; materials regarding policing issues in other major United States cities, including commission reports and Pate and Hamilton's book The Big Six: Policing America's Largest Cities; supplemental materials and appendices to the Independent Commission's report; requests for copies of the Commission report; transcripts from public hearings conducted by members of the Commission; and instructional materials related to the Video Incident Capture System, a video camera system that provides video and audio records of police officers' activities while on patrol.
DOI: 10.25549/independent-c69-2715
title: Gates v. Police Commission [14], 114. Transcript of 1991-05-07 proceedings, 1991-05-10

description: Exhibit (pp. 002092-002230): Chief Gates v. Police Commission. Appellate documents, volume 3, 1991 May 1-9 [folder 2 of 3]. Superior Court of the State of California for the County of Los Angeles, Department no. 85, Hon. Ronald M. Sohigian, Judge. Daryl F. Gates, etc., plaintiff, v. Board of Police Commissioners, etc., et al., defendants. No. BS 00 789. Related to case no. BC 025 356. Transcript of 1991 May 7 proceedings, transcribed 1991 May 10. PART OF A SERIES: The series consists of miscellaneous source materials that were collected and analyzed over the course of the Independent Commission's investigation. Included are the following: article clippings pertaining to the Rodney King incident; legal materials related to the Gates v. Board of Los Angeles Police Commissioners case, including appellate documents, court transcripts, preliminary injunctions, and briefs; black-and-white photographs; essays and articles related to police misconduct; issues of The Thin Blue Line, the Los Angeles Police Protective League's monthly publication, and Perspectives on Policing, a newsletter published by the United States Department of Justice; materials regarding policing issues in other major United States cities, including commission reports and Pate and Hamilton's book The Big Six: Policing America's Largest Cities; supplemental materials and appendices to the Independent Commission's report; requests for copies of the Commission report; transcripts from public hearings conducted by members of the Commission; and instructional materials related to the Video Incident Capture System, a video camera system that provides video and audio records of police officers' activities while on patrol.
DOI: 10.25549/independent-c69-2699
title: Gates v. Police Commission [14], 114. Transcript of 1991-05-07 proceedings, 1991-05-10

description: Exhibit (pp. 002092-002230): Chief Gates v. Police Commission. Appellate documents, volume 3, 1991 May 1-9 [folder 2 of 3]. Superior Court of the State of California for the County of Los Angeles, Department no. 85, Hon. Ronald M. Sohigian, Judge. Daryl F. Gates, etc., plaintiff, v. Board of Police Commissioners, etc., et al., defendants. No. BS 00 789. Related to case no. BC 025 356. Transcript of 1991 May 7 proceedings, transcribed 1991 May 10. PART OF A SERIES: The series consists of miscellaneous source materials that were collected and analyzed over the course of the Independent Commission's investigation. Included are the following: article clippings pertaining to the Rodney King incident; legal materials related to the Gates v. Board of Los Angeles Police Commissioners case, including appellate documents, court transcripts, preliminary injunctions, and briefs; black-and-white photographs; essays and articles related to police misconduct; issues of The Thin Blue Line, the Los Angeles Police Protective League's monthly publication, and Perspectives on Policing, a newsletter published by the United States Department of Justice; materials regarding policing issues in other major United States cities, including commission reports and Pate and Hamilton's book The Big Six: Policing America's Largest Cities; supplemental materials and appendices to the Independent Commission's report; requests for copies of the Commission report; transcripts from public hearings conducted by members of the Commission; and instructional materials related to the Video Incident Capture System, a video camera system that provides video and audio records of police officers' activities while on patrol.
DOI: 10.25549/independent-c69-2862
title: Gates v. Police Commission [17]. Transcript of 1991-04-25 proceedings, 1991-04-29

description: Exhibit (pp. 001810-001956): Chief Gates v. Police Commission. Appellate documents, volume 4, 1991 April 8 - May 20 [folder 2 of 2]. Superior Court of the State of California for the County of Los Angeles, Department no. 85, Honorable Ronald M. Sohigian, Judge. Daryl F. Gates, plaintiff, v. Board of Police Commissioners, defendant. No. BS 006 789. Transcript of 1991 April 25 proceedings, 1991 April 29. PART OF A SERIES: The series consists of miscellaneous source materials that were collected and analyzed over the course of the Independent Commission's investigation. Included are the following: article clippings pertaining to the Rodney King incident; legal materials related to the Gates v. Board of Los Angeles Police Commissioners case, including appellate documents, court transcripts, preliminary injunctions, and briefs; black-and-white photographs; essays and articles related to police misconduct; issues of The Thin Blue Line, the Los Angeles Police Protective League's monthly publication, and Perspectives on Policing, a newsletter published by the United States Department of Justice; materials regarding policing issues in other major United States cities, including commission reports and Pate and Hamilton's book The Big Six: Policing America's Largest Cities; supplemental materials and appendices to the Independent Commission's report; requests for copies of the Commission report; transcripts from public hearings conducted by members of the Commission; and instructional materials related to the Video Incident Capture System, a video camera system that provides video and audio records of police officers' activities while on patrol.