cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.n42zpe
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Sitophilus zeamais Motschulsky & V.de, 1855",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 230 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087801-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aj5dgk
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Centrolene buckleyi (Boulenger, 1882))",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087802-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vbkrqd
title: Occurrence Download

description: A dataset containing 6021 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rutidosis DC."
 ]
}

 The dataset includes 6021 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087803-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hp3hfn
title: Occurrence Download

description: A dataset containing 128989 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Chiasmia clathrata (Linnaeus, 1758)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 128989 records from 812 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087775-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tsyz3c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Centrolene geckoideum Jiménez de la Espada, 1872)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087806-240626123714530/datasets/export for details.
DOI: 10.15468/dl.jq2f4q
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron sophistarum Craven"
 ]
}

 The dataset includes 24 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087804-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h8ebmc
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Sitophilus zeamais Motschulsky & V.de, 1855",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 230 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087805-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gq3bnf
title: Occurrence Download

description: A dataset containing 4809 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sannantha Peter G.Wilson"
 ]
}

 The dataset includes 4809 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087807-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.j3073/6
title: G2_sims_4Myr

description: Simulations, G2 format, 3000 replicates, 4 million years
DOI: 10.5061/dryad.j3073/7
title: G2_sims_10Myr

description: Simulations, G2 format, 3000 replicates, 10 million years
DOI: 10.5061/dryad.j3073/8
title: G3_sims_4Myr

description: Simulations, G3 format, 3000 replicates, 4 million years
DOI: 10.5061/dryad.j3073/9
title: G3_sims_10Myr

description: Simulations, G3 format, 3000 replicates, 10 million years
DOI: 10.5061/dryad.j70qf/1
title: Navarro-Cano_et_al_2018_JAPPL

description: Nurse traits and soil data used in the paper
DOI: 10.5061/dryad.j7h0c/1
title: Breeding data associated with microsatellite allele length

description: Data are records of all attempted breedings of bank voles, and information about microsatellite allele length at two loci (Avpr1a and oxtr), and also information about litter size.
DOI: 10.5061/dryad.nb320/1
title: Agronomic and molecular data on two historical maize poulation across a long-term participatory breeding program

description: ANNEX I. Data on the agronomic performance of two historical maize populations, Amiúdo and Castro Verde, and their derived selection cycles from multi-location field trials. ANNEX II. Genotypic matrix of the alleles per individual plant, scored in base pairs. Thirty random individual plants from each cycle (initial populations and selection cycles) were genotyped with 20 microsatellite markers.
DOI: 10.5061/dryad.r58r0/1
title: Corytophanidae: data, trees, R code, TPS files

description: data, trees, R code, TPS files
DOI: 10.5061/dryad.rk3gn/2
title: Survival data

description: This file contains raw survival data for all the analysis, including post-infection mortality across generations; priming and resistance at generation 8 and 11 and priming in PI lines against a high infection dose
DOI: 10.5061/dryad.sh02b/6
title: Species density_Ishikari

description: The density of the focal species in Ishikari (Japan) during the period 1997 to 2005
DOI: 10.5061/dryad.t9n0r/1
title: Colony sampling data

description: This file contains the results for each bryozoan colony collected (1 colony = 1 row) during this study. Various infection and environmental parameters are presented for each colony collected in each river, tree and trip. The first tab contains the data and the second tab contains the legend of the first tab.
DOI: 10.5061/dryad.vk8cd/1
title: Shapes files of forest fragments in the Eastern Arc Mountains

description: Forest fragments containing native forest ≥10 ha in size and with ≥50% tree cover in 13 Eastern Arc Mountains located in Tanzania and Kenya.
DOI: 10.5061/dryad.0r20b/1
title: Quercus_kerrii_SSR

description: SSR data for Quercus kerrii
DOI: 10.5061/dryad.15d3s/1
title: Simulation script

description: R script used to simulate the invasion data used in the study.
DOI: 10.5061/dryad.15d3s/2
title: Experimental data

description: Experimental data of the invasions of T.chilonis performed for this study.
DOI: 10.5061/dryad.18bv1/1
title: pyrad parameters

description: These are the parameters used to demultiplex and process the data in pyrad.
DOI: 10.5061/dryad.1pk42/46
title: karvonen2

description: Table of parameter estimates of the varying parasite number experiment from Karvonen et al. 2003. Experiment gives the experimental condition. Model gives the specific form of the transmission function tested, the parameter column gives the specific parameter from the function estimated and the MLE column gives the maximum likelihood estimate.
DOI: 10.5061/dryad.1pk42/47
title: paller1

description: Table of parameter estimates of the varying parasite density experiment from Paller et al. 2007. Experiment gives the experimental condition. Model gives the specific form of the transmission function tested, the parameter column gives the specific parameter from the function estimated and the MLE column gives the maximum likelihood estimate.
DOI: 10.5061/dryad.1pk42/48
title: paller2

description: Table of parameter estimates of the varying parasite number experiment from Paller et al. 2007. Experiment gives the experimental condition. Model gives the specific form of the transmission function tested, the parameter column gives the specific parameter from the function estimated and the MLE column gives the maximum likelihood estimate.
DOI: 10.5061/dryad.1pk42/49
title: paras_density

description: Table of parameter estimates of the parasite density experiment. Experiment gives the experimental condition. Model gives the specific form of the transmission function tested, the parameter column gives the specific parameter from the function estimated and the MLE column gives the maximum likelihood estimate.
DOI: 10.5061/dryad.1pk42/50
title: time

description: Table of parameter estimates of the varying exposure duration experiment. Experiment gives the experimental condition. Model gives the specific form of the transmission function tested, the parameter column gives the specific parameter from the function estimated and the MLE column gives the maximum likelihood estimate.
DOI: 10.5061/dryad.1pk42/51
title: volume

description: Table of parameter estimates of the varying parasite number (constant density) experiment. Experiment gives the experimental condition. Model gives the specific form of the transmission function tested, the parameter column gives the specific parameter from the function estimated and the MLE column gives the maximum likelihood estimate.
DOI: 10.5061/dryad.4vg17/1
title: Dryad Accession for Hotaling et al. 2017, Journal of Biogeography

description: Relevant files for the associated study: input files for PLINK and Fastsimcoal2, a key of individuals/populations, and raw SNP catalog as output by STACKS with a whitelist for the loci/SNPs used in this study.
DOI: 10.5061/dryad.5h74t/1
title: articleDOI 10.1111_jav.01446_fairywren song data

description: See README
DOI: 10.5061/dryad.6jd34/1
title: Structure data file_complete dataset

description: This is an input file for the clustering software Structure that contains multilocus genotype data of several taxa of the Daphnia longispina complex (Daphnia longispina = 103 individuals; D. galeata = 134 individuals; D. cucullata = 75 individuals; Daphnia divergent mitochondrial clade I = 3 individuals; Daphnia divergent mitochondrial clade II = 11; Daphnia divergent mitochondrial clade III = 35 individuals). Information on the microsatellite loci as well as the populations are available in the publication or in the additional file associated to the publication.
DOI: 10.5061/dryad.6jd34/2
title: Structure parameter file_complete dataset

description: This file summarizes the Structure parameters that were used to obtain the results for the whole dataset presented in the publication.
DOI: 10.5061/dryad.6jd34/4
title: Structure results K=1-10_complete dataset

description: This file contains the results of the Structure analysis presented in the publication using the whole dataset. The zipfile includes the Evanno table as well as the indfiles for K1-10 that were obtained from Structure Harvester.
DOI: 10.5061/dryad.6jd34/5
title: Structure date file_subset longispina

description: This is an input file for the clustering software Structure that contains multilocus genotype data of Daphnia longispina (N = 103), Daphnia divergent mitochondrial clade II (N = 8), and Daphnia divergent mitochondrial clade III (N = 9). Information on the microsatellite loci as well as the populations are available in the publication or in the additional file associated to this publication.
DOI: 10.5061/dryad.6jd34/6
title: Structure parameter file_subset longispina

description: This file summarizes the Structure parameters that were used to obtain the results of the taxon D. longispina (including individuals belonging to mitochondrial clade II and III) presented in the publication.
DOI: 10.5061/dryad.6jd34/7
title: Structure results K=1-15_subset longispina

description: This file contains the results of the Structure analysis of D. longispina (including individuals belonging to divergent clades II and III) presented in the publication. The zipfile includes the Evanno table as well as the indfiles for K1-15 that were obtained from Structure Harvester.
DOI: 10.5061/dryad.6qj2n/1
title: raw_data

description: This is the raw data used in the analysis of inbreeding depression in Arabidopsis lyrata for the paper: "Relatively weak inbreeding depression in selfing but also in outcrossing populations of North American Arabidopsis lyrata"
DOI: 10.5061/dryad.7gd5q/1
title: Supplemental Data for Zhang et al. (2017). Plant Cell 10.1105/tpc.17.00348. Plastic Transcriptomes Stabilize Immunity to Pathogen Diversity: The Jasmonic Acid and Salicylic Acid Networks Within the Arabidopsis/Botrytis Pathosystem
DOI: 10.5061/dryad.8153g/28
title: BEAST_mtDNADataset5_equidsOnly_reducedPartns_rootNotConstrained_inclEovodovi.mcc
DOI: 10.5061/dryad.8153g/29
title: EPA_mtDNADataset4_allPartns_exclHippidion
DOI: 10.5061/dryad.8153g/30
title: EPA_mtDNADataset4_allPartns_inclHippidion
DOI: 10.5061/dryad.8153g/31
title: EPA_mtDNADataset4_reducedPartns_exclHippidion
DOI: 10.5061/dryad.8153g/32
title: EPA_mtDNADataset4_reducedPartns_inclHippidion
DOI: 10.5061/dryad.8153g/33
title: MrBayes_mtDNAdataset1_rhinoOut_allPartns_exclHippidion.con
DOI: 10.5061/dryad.8153g/34
title: MrBayes_mtDNAdataset1_rhinoOut_allPartns_inclHippidion.con
DOI: 10.5061/dryad.8153g/35
title: MrBayes_mtDNAdataset1_rhinoOut_reducedPartns_exclHippidion.con
DOI: 10.5061/dryad.8153g/36
title: MrBayes_mtDNAdataset1_rhinoOut_reducedPartns_inclHippidion.con
DOI: 10.5061/dryad.8153g/38
title: MrBayes_mtDNAdataset2_tapirOut_allPartns_inclHippidion.con
DOI: 10.5061/dryad.87c6j/1
title: R script analysing variants described in the paper

description: The file contains R code that loads the data from the R package HardyWeinberg. Functions are called that analyse the data and reproduce the tables given in the paper.
DOI: 10.5061/dryad.8ks16/4
title: 4st_generation_library

description: The archive includes the raw (fastq) and filtered (fasta) sequences of the 4st generation random library described in the main text.
DOI: 10.5061/dryad.b20ps/1
title: BergEtAl2017_AtlanticCod_TransatlanticDataset_PLINK-format

description: SNP array data for 316 individuals of Atlantic cod (Gadus morhua), genotyped at 8,165 loci in standard PLINK file format. The PLINK file format consists of two files, a map file and a ped file. 
In the map file, the first column defines the linkage group, the second column contains the loci names (dbSNP accession numbers), the third line describes the position within the linkage groups (here all are set to 0) and the fourth column defines the order of the SNPs within each linkage group.
In the ped file, column one is used to separate the populations (pop-1 to pop-9), column 2 defines the individuals within each population (denoted as the population abbreviation followed by the individual number) where the populations are abbreviated as follows: Can-N_PB = Placentia Bay, Can-N_SG = Southern Gulf of St. Lawrence, Can-S_SB = Sambro, Can-S_GM = Gulf of Maine, Can-S_BB = Browns Bank, Ice_F = Iceland Frontal, Ice_C = Iceland Coastal, NEAC = Northeast Arctic cod, NCC = Norwegian coastal cod. The genotypes are given as numbers from column 7 and onwards, where 1=A, 2=C, 3=G, 4=T. (For a thorough description of the PLINK format, please see https://www.cog-genomics.org/plink).
All SNPs are referred to by their database of Single Nucleotide Polymorphisms (dbSNP) accession numbers, available from: http://www.ncbi.nlm.nih.gov/SNP.
DOI: 10.5061/dryad.b5n38/3
title: TelemecoEtAl2017_JAnimEcol_MetaboliteSummary

description: Summary of metabolites for each treatment and species with functional groupings
DOI: 10.5061/dryad.bp479/1
title: ACCF Raw Data

description: Raw data of surgical results of our ACCF patients series
DOI: 10.5061/dryad.ck858/10
title: Reflectance_Lachrymal

description: Reflectance data of the lachrymal region of Neolamprologus brichardi.
DOI: 10.5061/dryad.ck858/11
title: Reflectance_Vertical_Facial_Stripe

description: Reflectance data of the vertical facial stripe of Neolamprologus brichardi.
DOI: 10.5061/dryad.ck858/12
title: Reflectance_Yellow

description: Reflectance data of the facial yellow patch of Neolamprologus brichardi.
DOI: 10.5061/dryad.ck858/13
title: Territorial_Combat

description: Behavioral data from dyadic territorial combats of Neolamprologus brichardi.
DOI: 10.5061/dryad.ck858/14
title: Woundsnow

description: Reflectance data of wound snow and wound spray (KOI MED®) used to manipulate the horizontal facial stripe of Neolamprologus brichardi.
DOI: 10.5061/dryad.ck858/7
title: Reflectance_Branchiostegal_Membrane

description: Reflectance data of the white branchiostegal membrane of Neolamprologus brichardi.
DOI: 10.5061/dryad.ck858/8
title: Reflectance_Head

description: Reflectance data of the head region of Neolamprologus brichardi.
DOI: 10.5061/dryad.ck858/9
title: Reflectance_Horizontal_Facial_Stripe

description: Reflectance data of the horizontal facial stripe of Neolamprologus brichardi.
DOI: 10.5061/dryad.d0bq0/1
title: Grab et al. Landscape influences pest control and yield

description: This data file contains site level information on the abundance of the pest Lygus lineolaris, the parasitism rates of Lygus nymphs, yield of the focal crop strawberry and surrounding land cover at multiple scales for each of three collection periods during fruit ripening across 13 farms in the finger lakes region of New York State
DOI: 10.5061/dryad.d27gv/1
title: Regan et al. (2017)
DOI: 10.5061/dryad.dg31k/1
title: Appendix_1_rao_calculation

description: Rao’s Q diversity - Appendix 1 provides an example spreadsheet to perform the calculation while the complete R code is stored in the GitHub repository:
https://github.com/mattmar/spectralrao.
DOI: 10.5061/dryad.f71vq/1
title: Validation data

description: Validation data used to validate the DBN model for Amphibolis in Jurien Bay, Halophila at Hay Point, and Zostera at Gladstone (supporting information S4 through S6, respectively).
DOI: 10.5061/dryad.f71vq/2
title: Lateral Growth from Existing Individuals

description: DBN CPT (visualised in supporting information S7)
DOI: 10.5061/dryad.f71vq/3
title: Physiological Status of Plants

description: DBN CPT (visualised in supporting information S7)
DOI: 10.5061/dryad.f71vq/4
title: Rate of Recovery in Shoot Density

description: DBN CPT (visualised in supporting information S7)
DOI: 10.5061/dryad.fr684/1
title: Muyshondt et al. - Data and code

description: The file contains the Matlab data and code belonging to the manuscript entitled "Sound attenuation in the ear of domestic chickens (Gallus gallus domesticus) as a result of beak opening" by Muyshondt et al.
DOI: 10.5061/dryad.gf7bh/1
title: 2017_ArcilaHernandezetal_ExperimentalColonies_Dryad

description: 2017_ArcilaHernandezetal_ExperimentalColonies_Dryad is a csv file with data by block and treatment for assays on ant foraging, stable isotopes, morphology, colony size, and count data of 16S sequences obtained with qPCR and 454 pyrosequencing.
DOI: 10.5061/dryad.gf7bh/2
title: 2017_ArcilaHernandezetal_wildcolonies_Dryad

description: 2017_ArcilaHernandezetal_wildcolonies_Dryad is a csv file with count and weight data of worker and reproductive ants in wild colonies
DOI: 10.5061/dryad.hq7b8/1
title: Supplementary tables and figures
DOI: 10.5061/dryad.hr1f1/1
title: LSM stack. Polygonia c-album (Swedish strain)

description: The file shows a stack of optical sections obtained by LSM scanning of anti-synapsid stained central brain of a female Polygonia c-album.
DOI: 10.5061/dryad.hr1f1/2
title: Raw data of Central brain, Mushroom body calyx and Antennal lobe volumes

description: This file contains the raw data for central brain, mushroom body calyx and antennal lobe volumes for Aglais urticae, Aglais io and Swedish/English Polygonia c-album. The first column specifies the treatment the butterfly female underwent (i.e. Newly eclosed, Unmated, Simple or Complex). The second column specifies the species identity. In the 3rd-5th column the central brain volume, mushroom body calyx volume and antennal lobe volume are given respectively. The 6th and 7th column describe the relative mushroom body calyx volume and relative antennal lobe volume respectively, both corrected for central brain size.
DOI: 10.5061/dryad.k1jt9/1
title: trait-based predictors

description: This file contains trait-based indices derived from measurements of plant traits in the mixtures of the Jena Experiment for 60 grassland species. All abbreviations of variable names are explained in the data file as well as in the related publication. Abbreviations of species names are explained in the READ me file.
DOI: 10.5061/dryad.k1jt9/2
title: Species performance measures

description: This file contains measures of species performance (population-level biomass, relative yields, performance plasticities) for 60 study species based on aboveground biomass harvested in the mixtures of the Jena Experiment at estimated peak canopy development (late May) in the study years 2005-2009. All abbreviations of variables are explained in the data file; abbreviations of species names are explained in the READ me file.
DOI: 10.5061/dryad.kc4dc/1
title: Color_Data_All_pops

description: Coloration dataset for entire populations
DOI: 10.5061/dryad.kc4dc/2
title: Colour_Data_Santa_Cecilia

description: Coloration dataset for Santa Cecilia Individuals
DOI: 10.5061/dryad.kc4dc/3
title: Histology_Data_Melanosomes

description: Melanosome measurements and data from histology analysis (TEM)
DOI: 10.5061/dryad.kn5s2/1
title: tower_longterm_surfacewater

description: File contains 7 years of surface water chemistry from the Timberlake Observatory for Wetland Restoration (TOWeR) site.
DOI: 10.5061/dryad.mn652/1
title: Data on plant stoichiometry from Jena Trait-based experiment

description: The data set contains the lemental composition of plants in the Jena trait-based experiment, including derived variables. The columns are explained in the read me file.
DOI: 10.5061/dryad.qn77s/1
title: Matlab script for manipulation of host by parasite

description: Matlab script for the model to explore under what conditions the two strategies of host manipulation allow trophically-transmitted parasites to persist in predator-prey systems: decreasing predation chance early in the development of the parasite, or increasing predation chance to increase the transmission rate of the parasites.
DOI: 10.5061/dryad.qn77s/2
title: Function used by the Matlab script

description: Function used by the Matlab script to model the effect of parasite presence on population dynamics of the intermediate and definitive hosts.