cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3679060_d1
title: Additional file 1: Table S1. of Draft genome sequences of eight bacteria isolated from the indoor environment: Staphylococcus capitis strain H36, S. capitis strain H65, S. cohnii strain H62, S. hominis strain H69, Microbacterium sp. strain H83, Mycobacterium iranicum strain H39, Plantibacter sp. strain H53, and Pseudomonas oryzihabitans strain H72

description: Additional strain information, including growth conditions and genome completeness/contamination. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3679039_d6.v1
title: Additional file 6: of Fast and accurate mutation detection in whole genome sequences of multiple isogenic samples with IsoMut

description: Example run and tuning of IsoMut. An example run of IsoMut on a reduced dataset for easy testing. (HTML 1353 kb)
DOI: 10.6084/m9.figshare.c.3679039_d6
title: Additional file 6: of Fast and accurate mutation detection in whole genome sequences of multiple isogenic samples with IsoMut

description: Example run and tuning of IsoMut. An example run of IsoMut on a reduced dataset for easy testing. (HTML 1353 kb)
DOI: 10.6084/m9.figshare.c.3679039_d7.v1
title: Additional file 4: of Fast and accurate mutation detection in whole genome sequences of multiple isogenic samples with IsoMut

description: Generating SNV test sets. Workflow for the generation of SNV test cohorts. (HTML 390 kb)
DOI: 10.6084/m9.figshare.c.3679039_d7
title: Additional file 4: of Fast and accurate mutation detection in whole genome sequences of multiple isogenic samples with IsoMut

description: Generating SNV test sets. Workflow for the generation of SNV test cohorts. (HTML 390 kb)
DOI: 10.6084/m9.figshare.c.3680491_d2.v1
title: Additional file 3: of Discovery of new candidate genes for rheumatoid arthritis through integration of genetic association data with expression pathway analysis

description: Data sheet. RA-associated variants and corresponding proximal genes as defined in the study by Okada et al. (XLS 62 kb)
DOI: 10.6084/m9.figshare.c.3680491_d2
title: Additional file 3: of Discovery of new candidate genes for rheumatoid arthritis through integration of genetic association data with expression pathway analysis

description: Data sheet. RA-associated variants and corresponding proximal genes as defined in the study by Okada et al. (XLS 62 kb)
DOI: 10.6084/m9.figshare.c.3680491_d4.v1
title: Additional file 1: Table S1. of Discovery of new candidate genes for rheumatoid arthritis through integration of genetic association data with expression pathway analysis

description: Clinical features of studied groups of patients with RA and healthy controls. Table S2 The expression and replication status of genes, which were grouped in common functional networks with genes previously associated with RA. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3680548_d1
title: Additional file 1: of Supplement of levosimendan to epinephrine improves initial resuscitation outcomes from asphyxial cardiac arrest

description: All data generated or analysed during this study. (ZIP 67 kb)
DOI: 10.6084/m9.figshare.c.3680548_d1.v1
title: Additional file 1: of Supplement of levosimendan to epinephrine improves initial resuscitation outcomes from asphyxial cardiac arrest

description: All data generated or analysed during this study. (ZIP 67 kb)
DOI: 10.6084/m9.figshare.c.3680542_d2.v1
title: MOESM1 of Genomic selection models double the accuracy of predicted breeding values for bacterial cold water disease resistance compared to a traditional pedigree-based model in rainbow trout aquaculture

description: Additional file 1: Table S1. Mean progeny phenotype (MPP) and predictions for BCWD resistance estimated with pedigree-based BLUP (P-BLUP) and genomic selection (GS) models in progeny testing families (PTF) of rainbow trout. The data provided represent the mean progeny phenotype (MPP) and predictions (EBV and GEBV) for BCWD resistance (DAYS and STATUS) using pedigree-based BLUP (P-BLUP) and genomic selection (GS) models (ssGBLUP, wssGBLUP and BayesB) in progeny testing families (PTF) of rainbow trout. The EBV and GEBV for the binary trait STATUS estimated on the underlying scale of liability using a threshold animal model are shown as transformed to the observed scale of probability of survival using a standard normal cumulative distribution function (CDF).
DOI: 10.6084/m9.figshare.c.3680542_d2
title: MOESM1 of Genomic selection models double the accuracy of predicted breeding values for bacterial cold water disease resistance compared to a traditional pedigree-based model in rainbow trout aquaculture

description: Additional file 1: Table S1. Mean progeny phenotype (MPP) and predictions for BCWD resistance estimated with pedigree-based BLUP (P-BLUP) and genomic selection (GS) models in progeny testing families (PTF) of rainbow trout. The data provided represent the mean progeny phenotype (MPP) and predictions (EBV and GEBV) for BCWD resistance (DAYS and STATUS) using pedigree-based BLUP (P-BLUP) and genomic selection (GS) models (ssGBLUP, wssGBLUP and BayesB) in progeny testing families (PTF) of rainbow trout. The EBV and GEBV for the binary trait STATUS estimated on the underlying scale of liability using a threshold animal model are shown as transformed to the observed scale of probability of survival using a standard normal cumulative distribution function (CDF).
DOI: 10.6084/m9.figshare.c.3680542_d4.v1
title: MOESM4 of Genomic selection models double the accuracy of predicted breeding values for bacterial cold water disease resistance compared to a traditional pedigree-based model in rainbow trout aquaculture

description: Additional file 4: Table S2. Mean progeny phenotype (MPP) and genomic predictions for BCWD resistance estimated with BayesB method using five genomic selection (GS) schemes in progeny testing families (PTF) of rainbow trout. The data provided represent the mean progeny phenotype (MPP) and genomic predictions (GEBV) for BCWD resistance (DAYS and STATUS) estimated with BayesB method using five genomic selection (GS) schemes in progeny testing families (PTF) of rainbow trout. The GEBV for the binary trait STATUS estimated on the underlying scale of liability using a threshold animal model are shown as transformed to the observed scale of probability of survival using a standard normal cumulative distribution function (CDF).
DOI: 10.6084/m9.figshare.c.3680578_d5
title: Additional file 3: Table S3. of Spatial and temporal distribution of house infestation by Triatoma infestans in the Toro Toro municipality, Potosi, Bolivia

description: Number of evaluated and infested houses according to each of the three methods described above. (XLS 22 kb)
DOI: 10.6084/m9.figshare.c.3681817_d1.v1
title: Additional file 1: of DMDtoolkit: a tool for visualizing the mutated dystrophin protein and predicting the clinical severity in DMD

description: codes_DMDtoolkit. This folder includes all the codes, manual (“Manual.docx”) and required databases/annotations of DMDtoolkit. For example, “ESE matrices.txt” contains the matrices of serine/arginine-rich (SR) proteins. (RAR 2602 kb)
DOI: 10.6084/m9.figshare.c.3681814_d1.v1
title: Additional file 1 of Transductive learning as an alternative to translation initiation site identification

description: SVM parameters obtained by executing the Grid Search method Due to the high amount of available molecules (around 20 thousand) for the remaining analyzed organisms and the Grid Search’s high runtime (given by the SVM’s execution time and the amount of records in the training set), we use 10% of the available sequences. Those sequences were chosen using the Mersenne Twister method, but keeping the ratio of positive (TIS) and negative (nTIS) classes. Grid Search was executed for each of the organisms and window size defined in this work. This table presents the values for the parameters (C,γ) found by the Grid Search using RBF kernel function, which were used for the training of ISVM and TSVM. (XLS 28.0 kb)
DOI: 10.6084/m9.figshare.c.3681814_d1
title: Additional file 1 of Transductive learning as an alternative to translation initiation site identification

description: SVM parameters obtained by executing the Grid Search method Due to the high amount of available molecules (around 20 thousand) for the remaining analyzed organisms and the Grid Search’s high runtime (given by the SVM’s execution time and the amount of records in the training set), we use 10% of the available sequences. Those sequences were chosen using the Mersenne Twister method, but keeping the ratio of positive (TIS) and negative (nTIS) classes. Grid Search was executed for each of the organisms and window size defined in this work. This table presents the values for the parameters (C,γ) found by the Grid Search using RBF kernel function, which were used for the training of ISVM and TSVM. (XLS 28.0 kb)
DOI: 10.6084/m9.figshare.c.3681817_d1
title: Additional file 1: of DMDtoolkit: a tool for visualizing the mutated dystrophin protein and predicting the clinical severity in DMD

description: codes_DMDtoolkit. This folder includes all the codes, manual (“Manual.docx”) and required databases/annotations of DMDtoolkit. For example, “ESE matrices.txt” contains the matrices of serine/arginine-rich (SR) proteins. (RAR 2602 kb)
DOI: 10.5883/ds-lcerviqc
title: First report of the deer ked, Lipoptena cervi, and associated pathogens in southern Quebec, Canada

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.6084/m9.figshare.28050062
title: Schizolobium parahyba raw GC-MS files

description: Metabolite extraction from Schizolobium parahyba seeds
DOI: 10.6084/m9.figshare.28050062.v1
title: Schizolobium parahyba raw GC-MS files

description: Metabolite extraction from Schizolobium parahyba seeds
DOI: 10.6084/m9.figshare.c.3681865_d1.v1
title: Additional file 2: of Metabolomics variable selection and classification in the presence of observations below the detection limit using an extension of ERp

description: A compressed folder (XERp Software.zip) containing the Matlab scripts to perform XERp as well as an example application. (ZIP 11 kb)
DOI: 10.6084/m9.figshare.c.3681865_d1
title: Additional file 2: of Metabolomics variable selection and classification in the presence of observations below the detection limit using an extension of ERp

description: A compressed folder (XERp Software.zip) containing the Matlab scripts to perform XERp as well as an example application. (ZIP 11 kb)
DOI: 10.15468/dl.962jc8
title: Occurrence Download

description: A dataset containing 174247 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salamandra salamandra (Linnaeus, 1758)"
 ]
}

 The dataset includes 174247 records from 1884 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038059-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d6rjhy
title: Occurrence Download

description: A dataset containing 171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scirpus polyphyllus Vahl",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 171 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0175204-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fmd39f
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen"
 ]
 },
 "Elevation 0.0-1200.0m",
 {
 "or" : [
 "Country is Papua New Guinea",
 "Country is Solomon Islands",
 "Country is Indonesia"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Palaquium Blanco",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 62 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027219-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5jyuwx
title: Occurrence Download

description: A dataset containing 563 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Reesa vespulae (Milliron, 1939)"
 ]
}

 The dataset includes 563 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0175223-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v42z7p
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Polypterus delhezi Boulenger, 1899)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 97 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047263-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xgtfy0
title: Occurrence Download

description: A dataset containing 631 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fadogia cienkowskii Schweinf."
 ]
}

 The dataset includes 631 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027221-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d5aphv
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Ecuador",
 "TaxonKey is Tayassu tajacu (Linnaeus, 1758)"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182307-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.px2bdt
title: Occurrence Download

description: A dataset containing 2633731 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spizella pusilla (A.Wilson, 1810)"
 ]
}

 The dataset includes 2633731 records from 142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047246-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mkmxcj
title: Occurrence Download

description: A dataset containing 356329 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Corylus L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 356329 records from 763 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027222-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yshgyv
title: Occurrence Download

description: A dataset listing the 4992 species recorded in GBIF matching the query:
{
 "PublishingCountry" : [
 "is Israel"
 ]
}

 The dataset's 4992 records were derived from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0236892-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zkrbub
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "HasCoordinate is true",
 "TypeStatus is Lectotype"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027222-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z38bhw
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((33.35346 -18.74886,33.33012 -18.88962,33.42625 -18.9267,33.51688 -18.89786,33.54023 -18.77701,33.52718 -18.74062,33.35346 -18.74886))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 16 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150296-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a75nak
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Magnolia grandiflora L.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 19 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136223-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hyvgex
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trichophorum planifolium (Spreng.) Palla",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 160 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0175222-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ynrfls
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Acanthemblemaria greenfieldi Smith-Vaniz & Palacio, 1974",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 57 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027225-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6pyfq5
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trichophorum clintonii (A.Gray) S.G.Sm.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 104 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0175221-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25srio
title: Occurrence Download

description: A dataset containing 342 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Living Specimen"
 ]
 },
 "Country is Costa Rica",
 "Year 2000-2019",
 "HasCoordinate is true",
 "TaxonKey is Crocodylus acutus (Cuvier, 1807)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 342 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027225-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ct9w6t
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-9.7641 38.24681,-8.41827 38.24681,-8.41827 39.11301,-9.7641 39.11301,-9.7641 38.24681))",
 "HasGeospatialIssue is false",
 "TaxonKey is Thaumetopoea pityocampa (Denis & Schiffermüller), 1776",
 "Year 2000-2021"
 ]
}

 The dataset includes 74 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0236497-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o6lsnd
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lontra longicaudis annectens (Major, 1897)"
 ]
}

 The dataset includes 216 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027226-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.