cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.9fh1s/1
title: bubbleDATA

description: Raw data of the numbers of bubbles on each sheet in 25 trials.
DOI: 10.5061/dryad.9fh1s/2
title: statistics

description: Comparison of the numbers of bubbles on each sheet type. Friedman Test  and Dunn's Multiple Comparisons Test.
DOI: 10.5061/dryad.9s1t9/1
title: WolvesAll_22feb2012.ped

description: Single nucleotide polymorphism (SNP) raw data files for 177 individuals for use with the software PLINK: PED file.
DOI: 10.5061/dryad.9s1t9/2
title: WolvesAll_22feb2012.map

description: Single nucleotide polymorphism (SNP) raw data files for 177 individuals for use with the software PLINK: MAP file.
DOI: 10.5061/dryad.9s1t9/3
title: Italy.txt

description: Single nucleotide polymorphism loci not in Hardy-Weinberg equilibrium for one of the five population clusters detected in the analyses (please see Figure 1, Table 3).
DOI: 10.5061/dryad.9s1t9/4
title: Dinaric-Balkan.txt

description: Single nucleotide polymorphism loci not in Hardy-Weinberg equilibrium for one of the five population clusters detected in the analyses (please see Figure 1, Table 3).
DOI: 10.5061/dryad.9s1t9/5
title: Carpathians.txt

description: Single nucleotide polymorphism loci not in Hardy-Weinberg equilibrium for one of the five population clusters detected in the analyses (please see Figure 1, Table 3).
DOI: 10.5061/dryad.9s1t9/6
title: Northcentral_Europe.txt

description: Single nucleotide polymorphism loci not in Hardy-Weinberg equilibrium for one of the five population clusters detected in the analyses (please see Figure 1, Table 3).
DOI: 10.5061/dryad.9s1t9/7
title: Ukrainian_Steppe.txt

description: Single nucleotide polymorphism loci not in Hardy-Weinberg equilibrium for one of the five population clusters detected in the analyses (please see Figure 1, Table 3).
DOI: 10.5061/dryad.bk90m/2
title: Phenotype data

description: This file contains tapeworm parasite infection scoring data for Tribolium castaneum.
DOI: 10.5061/dryad.d632k/1
title: Kallio et al_raw data

description: Individual level data for 77 bank voles. Headings of the columns: Individual from 1 to 77, sex of the animal, f= female, m=males; PUUV serostatus in September, 0= seronegative, 1=seropositive; MatAb carrier in September, 0= no, 1=yes; PUUV infected = seropositive in November, 0=no, 1= yes, enclosure where the animal has been captured, MatAb prevalence in September = number of MatAb carriers/(Matab carriers+seronegative) in September, treatment FI=founder females infected, MI=founder males infected
DOI: 10.5061/dryad.fg32t/1
title: microsatellite dataset from laboratory reciprocal-cross experiments
DOI: 10.5061/dryad.gd0m3/1
title: Generation Lenght for Mammals
DOI: 10.5061/dryad.gs135/1
title: tree files and sequence alignments

description: The tree_and_alignment.zip includes two folds, the treefile and the alignment. The fole "treefile" contains all trees reconstructed from the corresponding alignments in the "alignment" fold. For details please see the readme.txt file. All files can be opened by text editor such as Editplus or other free editor programs. Also, the tree files can be viewed by FigTree, and the alignments can be viewed by MEGA.
DOI: 10.5061/dryad.qg2rk/1
title: 131120 choice test data

description: Behavioural data of simultaneous choice tests between two urinary stimuli at the end of the branches of a Y maze. Data are time spent (in seconds) in the neutral part, on each branch, and in contact with each stimulus, recorded in laboratory with the Observer 5.0 software. Information about the tested mice and the stimuli are present, as well as references to the sections of the article referring to each test.
DOI: 10.5061/dryad.qg2rk/2
title: Habituation-Discrimination/Generalisation tests

description: Behavioural data of discrimination tests between two urinary stimuli placed on two sides of a box, after habituation to an other urinary stimulus. Data are time spent (in seconds) in contact with each stimulus, recorded in laboratory with the Observer 5.0 software. Information about the tested mice and the stimuli are present, as well as references to the sections of the article referring to each test.
DOI: 10.5061/dryad.qg82k/1
title: 5.8S-LSU_Alignment_Rama&al2014
DOI: 10.5061/dryad.qg82k/2
title: 5.8S_AlignmentForPhylocom_Rama&al2014
DOI: 10.5061/dryad.qg82k/3
title: ITS_OrderAlignments_Rama&al2014
DOI: 10.5061/dryad.r0056/1
title: BaARE.Equus_cab_mito

description: Alignment to the Equus caballus mitochondrial reference genome for sample BaARE.
DOI: 10.5061/dryad.r8ns3/10
title: VCF (variant call format) file of SNPs identified in NYC white-footed mice

description: Variant call format file of SNPs generated using the SAMTOOLS mpileup function.  All populations were used to make probabilistic SNP calls.
DOI: 10.5061/dryad.r8ns3/11
title: Results of Ka / Ks calculations for each white-footed mouse population pair

description: Excel spreadsheet of results from KAKS_Calculator.  Each population pair was compared and the 10 comparisons are displayed in separate tabs.
DOI: 10.5061/dryad.rk204/10
title: Enyalius_Alignments

description: Contains the alignments for the Enyalius samples.
DOI: 10.5061/dryad.rk204/3
title: Draco_CleanReads

description: Contains the cleaned reads for the Draco samples.
DOI: 10.5061/dryad.rk204/4
title: Enyalius_CleanReads

description: Contains cleaned reads for the Enyalius samples.
DOI: 10.5061/dryad.rk204/5
title: AbyssAssemblies

description: Contains the ABySS assembly output for each library. Each file has the following naming convention: LIBRARY_KMER_KMERCOV-contigs.fa
DOI: 10.5061/dryad.rk204/6
title: FinalAssemblies

description: Contains final assemblies for each sample. These are the outputs of pooling the ABySS assemblies for each sample and performing a local clustering and long-read assembly.
DOI: 10.5061/dryad.rk204/7
title: References

description: Contains the references recovered for each locus for each sample.
DOI: 10.5061/dryad.rk204/8
title: Passerines_Alignments

description: Contains alignments for the Passerine samples.
DOI: 10.5061/dryad.rk204/9
title: Draco_Alignments

description: Contains alignments for the Draco samples.
DOI: 10.5061/dryad.rm8jf564/24
title: Primulaceae_rpoB_Yan-etal-2011
DOI: 10.5061/dryad.rm8jf564/25
title: Ranunculaceae_ITS_Telford-etal-2011
DOI: 10.5061/dryad.rm8jf564/26
title: Ranunculaceae_trnH-psbA_Telford-etal-2011
DOI: 10.5061/dryad.rm8jf564/27
title: Rubiaceae_ITS_Guo-etal-2011
DOI: 10.5061/dryad.rm8jf564/28
title: Rubiaceae_trnH-psbA_Guo-etal-2011
DOI: 10.5061/dryad.rm8jf564/29
title: Taxaceae-ITS-Liu-etal-2011
DOI: 10.5061/dryad.rm8jf564/30
title: Taxaceae-trnLF-Liu-etal-2011
DOI: 10.5061/dryad.rm8jf564/31
title: Zingiberaceae_ITS_Shi-etal-2011
DOI: 10.5061/dryad.rm8jf564/32
title: Zingiberaceae_psbK-psbI_Shi-etal-201
DOI: 10.5061/dryad.s3k34/1
title: pedigree

description: This is the reconstructed pedigree associated with all individuals in the phenotype database
DOI: 10.5061/dryad.s3k34/2
title: phenotypes

description: In this file you find all traits measured for each individual (Resistance, Tolerance, Size...).
DOI: 10.5061/dryad.sj2hv/1
title: TimmobDmagnaPublic

description: Time until immobilization during exposure to 37C in Daphnia magna. Columns:
DOI: 10.5061/dryad.sj2hv/2
title: HbPublic

description: Haemoglobin absorption data
DOI: 10.5061/dryad.sj2hv/3
title: SupplementaryTable1

description: Details of Daphnia magna clones' origin and local climate conditions
DOI: 10.5061/dryad.081q1/1
title: R script and data for the analysis of circuit-SDM model

description: The archive contains in the root: A file "README.TXT" to do the analysis. And several files either described in the README file or coresponding to data files: a file "insect.csv" coresponding to per stem abundance of B. fusca across subsaharan localities for the optimisation of the species distribution models. A file "Busseola_fusca.asc" corresponding to maxent projection at present. A file "a_values" corresponding to individual Fst/(1-Fst) values among the genetic samples. There are 4 directories: "Fit" contains de present worldclim data to fit the models. "Climatic_layers" contains the past and future climatic reconstrucitons. "maxent" contains the maxent projections. "cicuitscape" contains the circuitscape executables for cicuit resistance distance calculation.
DOI: 10.5061/dryad.081q1/2
title: genetic_data

description: Microsatellite data
DOI: 10.5061/dryad.081q1/3
title: sample_locations

description: Geographic coordinates of the genetic samples
DOI: 10.5061/dryad.112cs/1
title: Global_archive
DOI: 10.5061/dryad.1m7sm/1
title: Capuchin nut-cracking data
DOI: 10.5061/dryad.1m7sm/2
title: Chimpanzee nut-cracking data
DOI: 10.5061/dryad.1s8f7/1
title: Genotypes of Butia eriospatha individuals.

description: Genotypes of Butia eriospatha individuals. Nine microsatellite loci were used to genotype adults and seedlings individuals of B. eriospatha.
DOI: 10.5061/dryad.1s8f7/2
title: Demography of Butia eriospatha.

description: This data file contain demographic data for four B. eriospatha populations.
DOI: 10.5061/dryad.2h4j5/1
title: Wellcome Trust data - Dryad

description: The Wellcome Trust data. Data given are the journal of publication, the score of the first and second assessors, the 2-year and 5-year impact factors and the number of citations as obtained from Google Scholar in 2011. Please cite Allen et al. (2009) PLoS One 4: e5910 and Eyre-Walker and Stoletzki (2013). PLoS Biology
DOI: 10.5061/dryad.2h4j5/2
title: F1000 data - Dryad

description: F1000 data. Data provided is the journal name, score from the first and second assessor (note that not all papers were assessed by two people), 2-year and 5-year impact factors, the number of assessors (in this analysis - there might have been more than 2) and the number of citations from Google Scholar as of 2011. Please cite Eyre-Walker and Stoletzki (2013) PLoS Biology
DOI: 10.5061/dryad.3ht1p/1
title: AuldetalAmNat2014

description: Field and lab collected data examining parasite interspecies competition and evolution in a natural host-multiparasite system
DOI: 10.5061/dryad.49jg0/1
title: JEvolBiol_Sensory evolution Poecilimon_Database

description: Includes the data from morphometric measurements on structures of the auditory system in different Poecilimon tettigoniids and the data from physiological measurements of hearing thresholds.
DOI: 10.5061/dryad.618fv/1
title: Alignments

description: This folder contain all the clean alignments used for PAML analyses. The name of the files are of the form TaxonomicGroup_Gene.phy.
DOI: 10.5061/dryad.7576g50f/1
title: SupplTable1CostingsbyNatTariffnAfC22010

description: Detailed itemised breakdown of treatment costs for TB, both Pulomnary and Extra-Pulmonary; Latent TB infection; Contact tracing; and Hepatitis. The items are based on the Cambridge TB service and the costs are derived from the NHS national tariff for financial year 2010 - 2011. The health related group codes used are shown. Costs do not include the uplift which varies from centre to centre. This potential shortfall in costs is allowed for in the range of costs modelled within the sensitivity analyses. We also provide a breakdown of potential costs for administering, reading and reporting the mantoux skin test.
DOI: 10.5061/dryad.7576g50f/2
title: SupplementaryInformationTables2to7Rev

description: Excel file of tabulated data from the oneway sensitivity analyses of the health economic model examining: Table 2 IGRA specificity and sensitivity; Table 3 Clinical parameters, namely all causes death rate, TB death rate, prevalence LTBI, prevalence TB, Relapse rate, Hepatitis rate; IGRA and TST repeat rates; Table 4 IGRA and TST costs; Table 5 IGRA specificity, TST specificity and sensitivity; Table 6 Treatment costs for LTBI, TB, Hepatitis. Table 7 shows the parameters included in the Monte Carlo probabilistic sensitivity analysis with their minimum, peak, maximum values, and the average values calculated by the model.
DOI: 10.5061/dryad.7576g50f/3
title: Monte CarloCEDbn12Rerun10to5AllvariableswithCosts

description: Cost Effectiveness Distribution of the Monte Carlo probabilistic sensitivity analysis for 12 key clinical and laboratory parameters after 100,000 iterations. The original values and calculation of incremental costs per healthy life year are shown.
DOI: 10.5061/dryad.7576g50f/4
title: total number of healthy yearsIGRASpec98n5cnBaseCaseRev

description: TreeAgePro 2009 file containing the health economic model at base case
DOI: 10.5061/dryad.7576g50f/5
title: total_number_of_healthy_yearsIGRASpec98n5cnBaseCaseRev12Dbna

description: TreeAgePro file with 12 key clinical and laboratory parameters expressed as triangular distribution to enable Monte Carlo probabilistic sensitivity analysis
DOI: 10.5061/dryad.7gg70/1
title: Furongian dataset

description: Abundance dataset. Samples were collected from restricted 10-20 cm shale intervals. Localities and depositional environments are indicated. Individuals were counted using the MNI protocol. The dataset was taxonomically standardized by the authors. Part of this dataset has been published by Balseiro et al. 2011 Palaios
DOI: 10.5061/dryad.7gg70/2
title: Tremadocian 1 dataset

description: Abundance dataset. Samples were collected from restricted 10-20 cm shale intervals. Localities and depositional environments are indicated. Individuals were counted using the MNI protocol. The dataset was taxonomically standardized by the authors.
DOI: 10.5061/dryad.7gg70/3
title: Tremadocian 2 dataset

description: Abundance dataset. Samples were collected from restricted 10-20 cm shale intervals. Localities and depositional environments are indicated. Individuals were counted using the MNI protocol. The dataset was taxonomically standardized by the authors. Part of this dataset has been published by Balseiro et al. 2011 Lethaia
DOI: 10.5061/dryad.7gg70/5
title: Floian 1 dataset

description: Abundance dataset. Samples were collected from restricted 10-20 cm shale intervals. Localities and depositional environments are indicated. Individuals were counted using the MNI protocol. The dataset was taxonomically standardized by the authors.
DOI: 10.5061/dryad.7gg70/6
title: Floian 2 dataset

description: Abundance dataset. Samples were collected from restricted 10-20 cm shale intervals. Localities and depositional environments are indicated. Individuals were counted using the MNI protocol. The dataset was taxonomically standardized by the authors.
DOI: 10.5061/dryad.94ms3/1
title: SAM_files
DOI: 10.5061/dryad.94ms3/2
title: Reconstructed_sequences
DOI: 10.5061/dryad.94ms3/3
title: Reference_contigs
DOI: 10.5061/dryad.94ms3/4
title: Script
DOI: 10.5061/dryad.94ms3/5
title: Translation_table_for_individuals
DOI: 10.5061/dryad.98n8c/1
title: Visualisation of Encounter Landscapes

description: We  provide  videos that show the motion of the ligand protein along the PCA directions for all the protein complexes mentioned in Table 1. We also provide  distributions of IRMSD and energy values for these complexes
DOI: 10.5061/dryad.9cf75/10
title: STRUCTURE data Class2Rep2

description: STRUCTURE input file for the 196 pea aphids from the wild populations from Tompkins County, New York, USA.  Clones beginning with ABR and AFR were collected from alfalfa fields.Clones beginning with CBR and CFR were collected from clover fields.  Columns in each dataset are:  CloneID, Marker1, Marker2, Marker3, Marker4, Marker5.  All markers are unlinked.  To findthe markers on the map,  use the ID codes in the file called "MarkerIDcodes.txt"
DOI: 10.5061/dryad.9cf75/11
title: STRUCTURE data Class2Rep3

description: STRUCTURE input file for the 196 pea aphids from the wild populations from Tompkins County, New York, USA.  Clones beginning with ABR and AFR were collected from alfalfa fields.Clones beginning with CBR and CFR were collected from clover fields.  Columns in each dataset are:  CloneID, Marker1, Marker2, Marker3, Marker4, Marker5.  All markers are unlinked.  To findthe markers on the map,  use the ID codes in the file called "MarkerIDcodes.txt"
DOI: 10.5061/dryad.9cf75/12
title: STRUCTURE data Class2Rep4

description: STRUCTURE input file for the 196 pea aphids from the wild populations from Tompkins County, New York, USA.  Clones beginning with ABR and AFR were collected from alfalfa fields.Clones beginning with CBR and CFR were collected from clover fields.  Columns in each dataset are:  CloneID, Marker1, Marker2, Marker3, Marker4, Marker5.  All markers are unlinked.  To findthe markers on the map,  use the ID codes in the file called "MarkerIDcodes.txt"
DOI: 10.5061/dryad.9cf75/13
title: STRUCTURE data Class3Rep1

description: STRUCTURE input file for the 196 pea aphids from the wild populations from Tompkins County, New York, USA.  Clones beginning with ABR and AFR were collected from alfalfa fields.Clones beginning with CBR and CFR were collected from clover fields.  Columns in each dataset are:  CloneID, Marker1, Marker2, Marker3, Marker4, Marker5.  All markers are unlinked.  To findthe markers on the map,  use the ID codes in the file called "MarkerIDcodes.txt"
DOI: 10.5061/dryad.9cf75/14
title: STRUCTURE data Class3Rep2

description: STRUCTURE input file for the 196 pea aphids from the wild populations from Tompkins County, New York, USA.  Clones beginning with ABR and AFR were collected from alfalfa fields.Clones beginning with CBR and CFR were collected from clover fields.  Columns in each dataset are:  CloneID, Marker1, Marker2, Marker3, Marker4, Marker5.  All markers are unlinked.  To findthe markers on the map,  use the ID codes in the file called "MarkerIDcodes.txt"
DOI: 10.5061/dryad.9cf75/6
title: STRUCTURE data Class1Rep2

description: STRUCTURE input file for the 196 pea aphids from the wild populations from Tompkins County, New York, USA.  Clones beginning with ABR and AFR were collected from alfalfa fields.Clones beginning with CBR and CFR were collected from clover fields.  Columns in each dataset are:  CloneID, Marker1, Marker2, Marker3, Marker4, Marker5.  All markers are unlinked.  To findthe markers on the map,  use the ID codes in the file called "MarkerIDcodes.txt"
DOI: 10.5061/dryad.9cf75/7
title: STRUCTURE data Class1Rep3

description: STRUCTURE input file for the 196 pea aphids from the wild populations from Tompkins County, New York, USA.  Clones beginning with ABR and AFR were collected from alfalfa fields.Clones beginning with CBR and CFR were collected from clover fields.  Columns in each dataset are:  CloneID, Marker1, Marker2, Marker3, Marker4, Marker5.  All markers are unlinked.  To findthe markers on the map,  use the ID codes in the file called "MarkerIDcodes.txt"
DOI: 10.5061/dryad.9cf75/8
title: STRUCTURE data Class1Rep4

description: STRUCTURE input file for the 196 pea aphids from the wild populations from Tompkins County, New York, USA.  Clones beginning with ABR and AFR were collected from alfalfa fields.Clones beginning with CBR and CFR were collected from clover fields.  Columns in each dataset are:  CloneID, Marker1, Marker2, Marker3, Marker4, Marker5.  All markers are unlinked.  To findthe markers on the map,  use the ID codes in the file called "MarkerIDcodes.txt"
DOI: 10.5061/dryad.9cf75/9
title: STRUCTURE data Class2Rep1

description: STRUCTURE input file for the 196 pea aphids from the wild populations from Tompkins County, New York, USA.  Clones beginning with ABR and AFR were collected from alfalfa fields.Clones beginning with CBR and CFR were collected from clover fields.  Columns in each dataset are:  CloneID, Marker1, Marker2, Marker3, Marker4, Marker5.  All markers are unlinked.  To findthe markers on the map,  use the ID codes in the file called "MarkerIDcodes.txt"
DOI: 10.5061/dryad.c3gh6/1
title: Coevolved Bacteria Exposed to Ancestral Hosts Over Time

description: Figure 1 Data
DOI: 10.5061/dryad.c3gh6/2
title: Mortality Rate Data

description: Figure 2 data
DOI: 10.5061/dryad.d6508/1
title: Genotype, phenotype, and pedigree primary data

description: Files include genotype (*_gens.txt & *_map.txt), phenotype (*_phens.txt), and pedigree (*_ped.txt) files for the MA, FJX, RNAseq, and qPCR animal subsets. Genotype files are space delimited, all other files tab delimited. Phenotype files include covariates used for statistical analyses. Animal Identifiers are common to each analysis set only.
DOI: 10.5061/dryad.dg367/1
title: Search times for background-matching prey

description: Data on blue tits' (Cyanistes caeruleus) search times for artificial, cryptic prey items on two different backgrounds (a or b). The colour pattern of the prey consisted of 4 black shapes, but the prey differed with respect to how closely they resembled the patterning of the two backgrounds. The number of elements that match backgrounds a and b are used to describe prey appearance. Thus for example 3:1 means that the prey had 3 shapes that were found in background a and 1 shape that was found in background b. Each of the 70 birds received 12 subsequent presentations of one prey type and in one background type only. The data show the 12 search times (in seconds) for each individual (s1, s2,...s12).
DOI: 10.5061/dryad.f0s3p/1
title: In-vivo

description: Dataset used for the in-vivo component of the study
DOI: 10.5061/dryad.f0s3p/2
title: In-vitro

description: Dataset used for the in-vitro component
DOI: 10.5061/dryad.gm354/2
title: File 1 Dryad Entry
DOI: 10.5061/dryad.gm354/3
title: File 2 Dryad Group ID
DOI: 10.5061/dryad.gm354/4
title: File 3 Dryad M blainvillii reps BLAST
DOI: 10.5061/dryad.gm354/5
title: File 4 Dryad M molossus reps BLAST
DOI: 10.5061/dryad.gm354/6
title: File 5 Dryad M waterhousii reps BLAST
DOI: 10.5061/dryad.ht62k/1
title: Raw data-Evolution paper- Machado-Schiaffino et al 2014
DOI: 10.5061/dryad.j1kn5tq6/1
title: USYB-2011-142.Suppl

description: Online supplemental material
DOI: 10.5061/dryad.j1kn5tq6/2
title: USYB-2011-142.TableS2

description: Online supplemental material, Table S2
DOI: 10.5061/dryad.j1kn5tq6/3
title: patch MrBayes3.1.2

description: Apply this patch for the original MrBayes 3.1.2 to get the modified version with compound Dirichlet priors
DOI: 10.5061/dryad.jj0kj/1
title: Labonte2014_Friction

description: This file contains measurements of peak friction forces generated by isolated "heel" pads of Indian stick insects, meausred at three different normal loads (n=10).
DOI: 10.5061/dryad.jj0kj/2
title: Labonte2014_AcanthaeAspectRatio

description: This file contains data on the relationship between aspect ratio and contact area of individual acanthae "tiny, hair-like outgrowths), found on the "heel" pads of Indian stick insects.
DOI: 10.5061/dryad.jj0kj/3
title: Labonte2014_AcanthaeContactArea

description: This file contains data on the projected contact area, hair contact density and contact area of individual hairs for "heel" pads of Indian stick insects, measured at five different normal loads (n=10 per normal load).
DOI: 10.5061/dryad.kd38f/1
title: Scripts, data, and appendix for "Analysis and visualization of complex macroevolutionary dynamics"

description: Appendix, with Supplementary Figure S1 - S11 and tables S1-S2. Data files: DNA sequence alignments and morphological dataset. Source code (C++ and R) for analysis and visualization.
DOI: 10.5061/dryad.m48tr/1
title: Body measures and heterozygosity levels

description: This data set includes nestling body measures and heterozygosity levels of nestlings and rearing parents. Nest_ID: Nest of rearing, Chick_ID: Individual nestling's code, Brood_manipul: Brood size manipulation treatment, Infestation: Flea infestation, Original_brood: Brood size before manipulation treatment, HetHLm(f)_f: Functional heterozygosity of foster male (female), HetHLm(f)_n: Neutral heterozygosity of foster male (female), HetHL_f: Nestling functional heterozygosity, HetHL_n: Nestling neutral heterozygosity, Sex: Nestling sex, Weight_d15: Nestling weight 15 days after hatching, Fledged: 1=nestling successfully fledged, 0= nestling died, LPS_response: Difference in thickness measure before and after LPS-Injection, Rank: Nestling hatching rank, Body_cond: Nestling body condition