cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.2d7h5
title: Data from: Third wave cognitive therapy versus mentalization-based treatment for major depressive disorder: a randomised clinical trial

description: Objective: To compare the benefits and harms of third-wave cognitive
 therapy versus mentalisation-based therapy in a small sample of depressed
 participants. Setting: The trial was conducted at an outpatient
 psychiatric clinic for non-psychotic patients in Roskilde, Denmark.
 Participants: 44 consecutive adult participants diagnosed with major
 depressive disorder. Interventions: 18 weeks of third-wave cognitive
 therapy (n=22) versus 18 weeks of mentalisation-based treatment (n=22).
 Outcomes: The primary outcome was the Hamilton Rating Scale for Depression
 (HDRS) at end of treatment (18 weeks). Secondary outcomes were: remission
 (HDRS &lt;8), Beck's Depression Inventory, Symptom Checklist 90
 Revised and The WHO-Five Well-being Index 1999. Results: The trial
 inclusion lasted for about 2 years as planned but only 44 out of the
 planned 84 participants were randomised. Two mentalisation-based
 participants were lost to follow-up. The unadjusted analysis showed that
 third-wave participants compared with mentalisation-based participants did
 not differ significantly regarding the 18 weeks HDRS score (12.9 vs 17.0;
 mean difference −4.14; 95% CI −8.30 to 0.03; p=0.051). In the analysis
 adjusted for baseline HDRS score, the difference was favouring third-wave
 cognitive therapy (p=0.039). At 18 weeks, five of the third-wave
 participants (22.7%) were in remission versus none of the
 mentalisation-based participants (p=0.049). We recorded no suicide
 attempts or suicides during the intervention period in any of the 44
 participants. No significant differences were found between the two
 intervention groups on the remaining secondary outcomes. Conclusions:
 Third-wave cognitive therapy may be more effective than
 mentalisation-based therapy for depressive symptoms measured on the HDRS.
 However, more randomised clinical trials are needed to assess the effects
 of third-wave cognitive therapy and mentalisation-based treatment for
 depression. Trial registration number: Registered with Clinical Trials
 government identifier: NCT01070134.
description: MIPSYSTATA file. The
 variables are described in the data set. Questions:
 janusjakobsen-at-mac-dot-com
DOI: 10.5061/dryad.84q03k0
title: Data from: Trait-dependant tolerance of bats to urbanisation: a global meta-analysis

description: Urbanization is a severe threat to global biodiversity, often leading to
 taxonomic and functional homogenization. However, current urban ecology
 research has focused mostly on urban birds and plants, limiting our
 ability to make generalisations about the drivers of urban biodiversity
 globally. To address this gap, we conducted a global meta-analysis of 87
 studies, including 180 bat species (Chiroptera) from urban areas in Asia,
 Australia, Europe, North & South America. We aimed to 1)
 understand the importance of functional traits and phylogeny in driving
 changes in urban bat assemblages, and 2) assess the capacity of traits for
 predicting which types of species are most sensitive to urbanization. Our
 results indicate that species-specific functional traits explain
 differences in the intensity of urban habitat use. Urban tolerance mainly
 occurred within the open and edge space foraging and trawling species as
 well as in bats with flexible roosting strategies. In addition, across
 bioregions and independent of phylogeny, urban tolerance correlated with
 higher aspect ratio, a trait enabling fast flight but less agile maneuvers
 during aerial food acquisition. Predictive success varied between
 bioregions, however yielded in a range between 43-83 %. Our analysis
 demonstrates that the local extinction of bat species in urban areas is
 non-random, trait-based and predictable, allowing urban landscape managers
 to tailor local conservation actions to particular types of species.
description: Species specific log
 odds ratio (yi) and its variation (vi) per publication in response to
 urbanisation.Species specific log
 odds ratio (yi) and its variation (vi) per publication. This data was used
 to calculate species-specific estimated effect size of urbanisation.
 Log-odds ratios are derived from lists and numbers of species sampled and
 provided by the original author's publication. Further details
 concerning authors, publications, and which habitat types in urban versus
 non-urban areas where used to calculate the log odds ratio are provided in
 Table SI1 of this publication.Jung &
 Threlfall_Data_LogOddsratio.xlsx
DOI: 10.5061/dryad.h7km8
title: Data from: The value of oviposition timing, queen presence and kinship in a social insect

description: Reproductive cooperation confers benefits, but simultaneously creates
 conflicts among cooperators. Queens in multi-queen colonies of ants share
 a nest and its resources, but reproductive competition among queens often
 results in unequal reproduction. Two mutually non-exclusive factors may
 produce such inequality in reproduction: worker intervention or queen
 traits. Workers may intervene by favouring some queens over others, owing
 to either kinship or queen signals. Queens may differ in their intrinsic
 fecundity at the onset of oviposition or in their timing of the onset of
 oviposition, leading to their unequal representation in the brood. Here,
 we test the role of queen kin value (relatedness) to workers, timing of
 the onset of oviposition and signals of presence by queens in determining
 the maternity of offspring. We show that queens of the ant Formica fusca
 gained a significantly higher proportion of sexuals in the brood when
 ovipositing early, and that the presence of a caged queen resulted in a
 significant increase in both her share of sexual brood and her overall
 reproductive share. Moreover, the lower the kin value of the queen, the
 more the workers invested in their own reproduction by producing males.
 Our results show that both kinship and breeding phenology influence the
 outcome of reproductive conflicts, and the balance of direct and indirect
 fitness benefits in the multi-queen colonies of F. fusca.
description: Queen shares and worker
 reproductionExcel file contains data
 collected on colony productivity, reproductive shares of experimental
 queens, relatedness estimates and worker reproduction.data Ozan et al.
 2013.xlsx
DOI: 10.5061/dryad.8910
title: Data from: No evidence for postcopulatory inbreeding avoidance in Drosophila melanogaster

description: Selection to avoid inbreeding is predicted to vary across species due to
 differences in population structure and reproductive biology. Over the
 past decade, there have been numerous investigations of postcopulatory
 inbreeding avoidance, a phenomenon that first requires discrimination of
 mate (or sperm) relatedness and then requires mechanisms of male ejaculate
 tailoring and/or cryptic female choice to avoid kin. The number of studies
 that have found a negative association between male-female genetic
 relatedness and competitive fertilization success is roughly equal to the
 number of studies that have not found such a relationship. In the former
 case, the underlying mechanisms are largely unknown. The present study was
 undertaken to verify and expand upon a previous report of postcopulatory
 inbreeding avoidance in D. melanogaster, as well as to resolve underlying
 mechanisms of inbreeding avoidance using transgenic flies that express a
 sperm head-specific fluorescent tag. However, siblings did not have a
 lower fertilization success as compared to unrelated males in either the
 first (P1) or second (P2) mate role in sperm competition with a standard
 unrelated competitor male in our study population of D. melanogaster.
 Analyses of mating latency, copulation duration, egg production rate and
 remating interval further revealed no evidence for inbreeding avoidance.
description: Archiveall 8 data files compressed.
DOI: 10.5061/dryad.r1b48
title: Data from: Closing the gap: avian lineage splits at a young, narrow seaway imply a protracted history of mixed population response

description: The evolutionary significance of spatial habitat gaps has been well
 recognized since Alfred Russel Wallace compared the faunas of Bali and
 Lombok. Gaps between islands influence population structuring of some
 species, and flightless birds are expected to show strong partitioning
 even where habitat gaps are narrow. We examined the population structure
 of the most numerous living flightless land bird in New Zealand, Weka
 (Gallirallus australis). We surveyed Weka and their feather lice in native
 and introduced populations using genetic data gathered from DNA sequences
 of mitochondrial genes and nuclear β-fibrinogen and five microsatellite
 loci. We found low genetic diversity among extant Weka population samples.
 Two genetic clusters were evident in the mtDNA from Weka and their lice,
 but partitioning at nuclear loci was less abrupt. Many formerly recognized
 subspecies/species were not supported; instead, we infer one subspecies
 for each of the two main New Zealand islands. Although currently range
 restricted, North Island Weka have higher mtDNA diversity than the more
 wide-ranging southern Weka. Mismatch and neutrality statistics indicate
 North Island Weka experienced rapid and recent population reduction, while
 South Island Weka display the signature of recent expansion. Similar
 haplotype data from a widespread flying relative of Weka and other New
 Zealand birds revealed instances of North Island—South Island partitioning
 associated with a narrow habitat gap (Cook Strait). However, contrasting
 patterns indicate priority effects and other ecological factors have a
 strong influence on spatial exchange at this scale.
description: Weka_micro_matrixMatrix of alleles at five microsatellite loci for individual weka (Gallirallus australis) in New ZealandWeka Control Region haplotypes A–TPartial, homologous, mitochondrial Control Region DNA sequences representing each of 20 haplotypes encountered in a sample of weka (Gallirallus australis)Weka fibrinogen 7 three allelesDNA sequences representing three alleles found in weka (Gallirallus australis) at the nuclear locus β-fibrinogen intron 7 (FGB-7), using PCR with the primers Fib-BI7U (5´ GGA GAA AAC ACA ATG ACA ATT CAC 3´) and Fib-BI7L (5´ TCC CCA GTA GTA TCT GCC ATT AGG GTT T 3´) (Prychitko & Moore 1997)Pseudomenopon lice weka, BR, pukekoRepresentative partial DNA sequences from the mitochondrial Cytochrome oxidase subunit 1 gene in Pseudomenopon feather lice (Phthiraptera) found on Gallirallus australis, Gallirallus philippensis and Porphyrio melanotus bird hosts.Rallicola lice weka, banded rail pukekoRepresentative partial DNA sequences from the mitochondrial Cytochrome oxidase subunit 1 gene in Rallicola feather lice (Phthiraptera) found on Gallirallus australis, Gallirallus philippensis and Porphyrio melanotus bird hosts.
DOI: 10.5061/dryad.rt83q
title: Data from: Repeatable aversion across threat types is linked with life history traits but is dependent on how aversion is measured

description: Personality research suggests that individual differences in risk aversion
 may be explained by links with life history variation. However, few
 empirical studies examine whether repeatable differences in risk avoidance
 behaviour covary with life history traits among individuals in natural
 populations, or how these links vary depending on the context and the way
 risk aversion is measured. We measured two different risk avoidance
 behaviours (latency to enter the nest and inspection time) in wild great
 tits (Parus major) in two different contexts - response to a novel object
 and to a predator cue placed at the nest box during incubation, and
 related these behaviours to female reproductive success and condition.
 Females responded equally strongly to both stimuli, and although both
 behaviours were repeatable, they did not correlate. Latency to enter was
 negatively related to body condition and the number of offspring fledged.
 By contrast, inspection time was directly explained by whether incubating
 females had been flushed from the nest before the trial began. Thus, our
 inferences on the relationship between risk aversion and fitness depend on
 how risk aversion was measured. Our results highlight the limitations of
 drawing conclusions about the relevance of single measures of a
 personality trait such as risk aversion.
description: Davidson et al
 Repeatable aversion across threat types Raw DataRaw data associated with
 the paper by Davidson et al "Repeatable aversion across threat types
 is linked with life history traits but is dependent on how aversion is
 measured".DavidsonQuinn_Aversion_RawData.xlsx
DOI: 10.5061/dryad.s60k4
title: Data from: Nest as an extended phenotype signal of female quality in the great reed warbler

description: Extended phenotypes with signalling function are mostly restricted to
 animal taxa that use construction behaviour during courtship displays.
 However, they can be used also as post-mating signals of mate quality,
 allowing individuals to obtain reliable information about their partners.
 Nest size may have such a signalling function and a lot of indirect
 evidence supports this view. However, direct evidence based on an
 experimental approach is still widely missing. Here we test the role of
 nest size in post-mating signalling of mate quality in the great reed
 warbler Acrocephalus arundinaceus, a passerine with female-restricted
 nest-building behaviour. Based on observational data, clutch size,
 nestling weight, brood size and fledglings’ propensity to return to their
 natal site positively correlated with nest size. Moreover, we
 experimentally enlarged great reed warbler nests to investigate whether
 this manipulation affects male investment in feeding. We found that males
 fed their nestlings significantly more intensively on enlarged nests than
 those on control nests. This suggests that nest size in this species
 serves as a signal of female quality or willingness to invest in
 reproduction and that it pays males to enhance their feeding effort
 according to this signal. Thus, we provide convincing evidence that animal
 communication takes place through the extended phenotypes and that
 post-mating signalling of quality is not restricted only to males, but may
 function equally well in females.
description: Nest size vs. clutch
 sizenestXclutch.txtNest size vs. brood sizenest_sizeXbrood_size.txtNest size vs. offspring return rateReturnNO = nest volume of nests with no fledglings returned to study site ReturnYES = nest volume of nests with one or more fledglings returned to study sitenest_sizeANDrecruts.txtExperimental nest size enlargement vs. nestling body weightdate 1 = 1st May; treatment: C = control, ZV = enlargedExp-nestling_weightXnest_size.txtFeeding effort vs. experimental nest size enlargementdate 1 = 1st May; treatment: C = control, ZV = enlargedExp-nest_sizeXamount_of_prey.txtFeeding effort vs. nest sizedate 1 = 1st MayOBSERV-nest_sizeXamount_of_prey.txtNest size vs. nestling body weightdate 1 = 1st May
DOI: 10.5061/dryad.14762
title: Data from: Burst muscle performance predicts the speed, acceleration, and turning performance of Anna's hummingbirds

description: Despite recent advances in the study of animal flight, the biomechanical
 determinants of maneuverability are poorly understood. It is thought that
 maneuverability may be influenced by intrinsic body mass and wing
 morphology, and by physiological muscle capacity, but this hypothesis has
 not yet been evaluated because it requires tracking a large number of free
 flight maneuvers from known individuals. We used an automated tracking
 system to record flight sequences from 20 Anna's hummingbirds flying
 solo and in competition in a large chamber. We found that burst muscle
 capacity predicted most performance metrics. Hummingbirds with higher
 burst capacity flew with faster velocities, accelerations, and rotations,
 and they used more demanding complex turns. In contrast, body mass did not
 predict variation in maneuvering performance, and wing morphology
 predicted only the use of arcing turns and high centripetal accelerations.
 Collectively, our results indicate that burst muscle capacity is a key
 predictor of maneuverability.
description: annasairdatatrial information, wing morphology, body mass, load lifting performance, and flight maneuvering performance of Anna's hummingbirds
DOI: 10.5061/dryad.h1nj848
title: Data from: Trait evolution in topical rubber (Hevea brasiliensis) trees is related to dry season intensity

description: 1. Drought shapes the distribution and survival of trees even in tropical
 wet forests, and the wood and leaf trait spectra are used to understand
 drought adaptations. However, trait variation may result from ontogenetic
 adjustment or be related to tree size, and not reflect evolutionary
 adaptations. 2. Intraspecific variation in adaptations to drought can be
 an important factor in a species’ distribution and response to climate
 change, but excluding potentially confounding factors and proving adaptive
 evolution is challenging. Provenance trials can identify hereditary
 variability. 3. We analysed wood and leaf traits in rubber (Hevea
 brasiliensis) tree clones from 15 locations in the Amazon basin that were
 planted in northern Thailand, controlled for tree size, tested for genetic
 relatedness and the phylogenetic signal in traits, and compared trait
 variations with the climate at the location of origin. 4. Correlations
 between traits and tree size were low. Intra-specific trait variation was
 similar to relationships in published among-species comparisons and
 correlations among wood traits and correlations among leaf traits were
 stronger than between wood and leaf traits. Genotype explained 30 – 70% of
 the trait variation, and traits differed in how much of this variation was
 controlled by location or the relatedness among clones. 5. There was no
 correlation with mean temperature or total annual rainfall. However,
 rainfall in the driest quarter (19 – 199 mm) was strongly related to leaf
 mass per area, carbon isotopic composition and area-based nitrogen
 content(r2 = 0.54 - 0.70) and weaker to wood traits (vessel density and
 vessel lumen fraction). Trees from locations with a stronger dry season
 also had higher growth rates in Thailand. 6. All traits correlating with
 climate showed a significant phylogenetic signal. We found no evidence of
 increased drought tolerance, but the trait spectrum and higher growth in
 trees from drier locations suggests that deciduous rubber trees have
 adapted via drought avoidance rather than tolerance. Our study also
 underlines the importance of looking at a suite of traits rather than
 individual ones to understand adaptive strategies.
description: Functional traits of
 Hevea brasiliensis cloneswood and leaf traits and
 tree size for Hevea brasiliensis clones from Brazil planted in a
 provenance trial in ThailandHevea
 traits.csv
DOI: 10.5061/dryad.f05mk
title: Data from: Digging through model complexity: using hierarchical models to uncover evolutionary processes in the wild

description: The growing interest for studying questions in the wild requires
 acknowledging that eco-evolutionary processes are complex, hierarchically
 structured and often partially observed or with measurement error. These
 issues have long been ignored in evolutionary biology, which might have
 led to flawed inference when addressing evolutionary questions.
 Hierarchical modelling (HM) has been proposed as a generic statistical
 framework to deal with complexity in ecological data and account for
 uncertainty. However, to date, HM has seldom been used to investigate
 evolutionary mechanisms possibly underlying observed patterns. Here, we
 contend the HM approach offers a relevant approach for the study of
 eco-evolutionary processes in the wild by confronting formal theories to
 empirical data through proper statistical inference. Studying
 eco-evolutionary processes requires considering the complete and often
 complex life histories of organisms. We show how this can be achieved by
 combining sequentially all life histories components and all available
 sources of information through HM. We demonstrate how eco-evolutionary
 processes may be poorly inferred or even missed without using the full
 potential of HM. As a case study, we use the Atlantic salmon and data on
 wild marked juveniles. We assess a reaction norm for migration and two
 potential trade-offs for survival. Overall, HM has a great potential to
 address evolutionary questions and investigate important processes that
 could not previously be assessed in laboratory or short time-scale
 studies.
description: Data_Buoroetal2012_JEBData collected in the field (Scorff river, France). Data file was created using R software. Description of abbreviations can be find in article and code.Models_Buoro et al 2012_JEBCode of the model. Bayesian analysis were conduct using OpenBUGS software.
DOI: 10.5061/dryad.8dk80
title: Data from: Microhabitat partitioning in seagrass mesograzers is driven by consistent species choices across multiple predator and competitor contexts

description: Explanations for the coexistence of multiple species from the same
 functional group or taxonomic clade frequently include fine-scale resource
 partitioning. However, despite the hypothesized importance of niche
 partitioning, we know relatively little about the underlying mechanisms.
 For example, differences in resource use may be fixed consequences of
 organism traits, or they may be achieved via context-dependent behaviors.
 In this study we investigated mechanisms of microhabitat partitioning
 using eight species of marine mesograzers inhabiting seagrass and algae
 habitats, using laboratory trials to measure microhabitat use in the
 presence and absence of both predators and competitors. We found clear
 evidence for microhabitat partitioning between the species, which account
 for over 60% of the mesograzers commonly found in this system and vary in
 both body size and the ability to build tubes on habitat substrates.
 Species-specific microhabitat use was poorly predicted by these two
 traits, but remained remarkably consistent across contexts. Habitat use
 was not affected by the presence of fish predators common in this system,
 even though predation pressure is thought to place strong constraints on
 microhabitat in communities of plant-associated arthropods. The presence
 of competing species also did not affect the relative separation of
 microhabitat use. Behavioral responses to potential competitors did cause
 significant changes in microhabitat use in all of the smallest species,
 but these changes did not depend on competitor identity and were
 relatively small compared to among-species patterns of microhabitat
 partitioning. The consistency of species-specific microhabitat use,
 regardless of the presence of predators or competitors, should make
 coexistence most likely among species that differ in these choices. For
 these species, it appears that the benefits accrued from their selected
 microhabitats are not affected by species interactions, or that any
 benefits of alternative microhabitat use are outweighed by risks
 associated with movement.
description: microhabitat use of
 seagrass grazersmicrohabitat preferences
 for seagrass mesograzers in monoculture, polyculture, high (24 ind. per
 tank) and low (24 ind. per tank) density, and with presence or absence of
 fish predators. grazers could choose between water, ulva, seagrass top,
 and seagrass bottomcount_data_amphipods.txt