cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21080512
title: Supplementary_Data.xlsx

description: Around 20 NSN- or SN-GVOs per replica were collected and processed to obtain hairpin-bisulfite amplicons for major satellites and IAP_LTR1a. Briefly, 100 ng salmon sperm DNA was added as carrier DNA and samples were treated with Proteinase K (0.2 mg/ml in 2 mM Tris-HCl, 1 mM EDTA). Proteinase K was inactivated with 8.14 mM Pefabloc SC (Sigma-Aldrich), followed by restriction with DdeI (NEB) for IAP-LTR1a or Eco47I (Fermentas) for major satellites. Subsequently, ligation of the Hairpin linker (Pho-TNACCCGGTADDDDDDDDTACCGGG for IAP_LTR1a and Pho-GACGGGCCTADDDDDDDDTAGGCCC for major Satellites) was performed with T4 Ligase (NEB) and samples were bisulfite treated. Amplification was performed using HOT FIREPol DNA Polymerase (Solis BioDyne) using fusion primer including sequences for preparation of TruSeq amplicon libraries (major Satellites: 95°C 15’ 40x (95°C 1’, 56°C 2’, 72°C 1’) with F-ccatctcatccctgcgtgtctccgacgactacgagtgcgtggaaaatttagaaatgtttaatgtag, R-cctatcccctgtgtgccttggcagtcgactacgagtgcgtaacaaaaaaactaaaaatcataaaaa; IAP-LTR1a: 95°C 15’ 45x (95°C 1’, 51°C 45’’, 72°C 1’) supplemented with HotStart IT Binding Protein (Affymetrix) with F-ccatctcatccctgcgtgtctccgacgactacgagtgcgtttttttttttaggagagttatattt, R-cctatcccctgtgtgccttggcagtcgactacgagtgcgtatcactccctaattaactacaac). Amplicons were purified and further amplified with TruSeq primers including barcodes (5 cycles), pooled and sequenced on an Illumina Miseq machine in a 2x150 bp run. Obtained reads were analyzed using BiQAnalyzer HT. The methylation pattern obtained and the sequence identity, conversion rate of the DNA and the linker are given.
DOI: 10.6084/m9.figshare.21080512.v2
title: Supplementary_Data.xlsx

description: Around 20 NSN- or SN-GVOs per replica were collected and processed to obtain hairpin-bisulfite amplicons for major satellites and IAP_LTR1a. Briefly, 100 ng salmon sperm DNA was added as carrier DNA and samples were treated with Proteinase K (0.2 mg/ml in 2 mM Tris-HCl, 1 mM EDTA). Proteinase K was inactivated with 8.14 mM Pefabloc SC (Sigma-Aldrich), followed by restriction with DdeI (NEB) for IAP-LTR1a or Eco47I (Fermentas) for major satellites. Subsequently, ligation of the Hairpin linker (Pho-TNACCCGGTADDDDDDDDTACCGGG for IAP_LTR1a and Pho-GACGGGCCTADDDDDDDDTAGGCCC for major Satellites) was performed with T4 Ligase (NEB) and samples were bisulfite treated. Amplification was performed using HOT FIREPol DNA Polymerase (Solis BioDyne) using fusion primer including sequences for preparation of TruSeq amplicon libraries (major Satellites: 95°C 15’ 40x (95°C 1’, 56°C 2’, 72°C 1’) with F-ccatctcatccctgcgtgtctccgacgactacgagtgcgtggaaaatttagaaatgtttaatgtag, R-cctatcccctgtgtgccttggcagtcgactacgagtgcgtaacaaaaaaactaaaaatcataaaaa; IAP-LTR1a: 95°C 15’ 45x (95°C 1’, 51°C 45’’, 72°C 1’) supplemented with HotStart IT Binding Protein (Affymetrix) with F-ccatctcatccctgcgtgtctccgacgactacgagtgcgtttttttttttaggagagttatattt, R-cctatcccctgtgtgccttggcagtcgactacgagtgcgtatcactccctaattaactacaac). Amplicons were purified and further amplified with TruSeq primers including barcodes (5 cycles), pooled and sequenced on an Illumina Miseq machine in a 2x150 bp run. Obtained reads were analyzed using BiQAnalyzer HT. The methylation pattern obtained and the sequence identity, conversion rate of the DNA and the linker are given.
DOI: 10.6084/m9.figshare.21080512.v1
title: Supplementary_Data.xlsx

description: Around 20 NSN- or SN-GVOs per replica were collected and processed to obtain hairpin-bisulfite amplicons for major satellites and IAP_LTR1a. Briefly, 100 ng salmon sperm DNA was added as carrier DNA and samples were treated with Proteinase K (0.2 mg/ml in 2 mM Tris-HCl, 1 mM EDTA). Proteinase K was inactivated with 8.14 mM Pefabloc SC (Sigma-Aldrich), followed by restriction with DdeI (NEB) for IAP-LTR1a or Eco47I (Fermentas) for major satellites. Subsequently, ligation of the Hairpin linker (Pho-TNACCCGGTADDDDDDDDTACCGGG for IAP_LTR1a and Pho-GACGGGCCTADDDDDDDDTAGGCCC for major Satellites) was performed with T4 Ligase (NEB) and samples were bisulfite treated. Amplification was performed using HOT FIREPol DNA Polymerase (Solis BioDyne) using fusion primer including sequences for preparation of TruSeq amplicon libraries (major Satellites: 95°C 15’ 40x (95°C 1’, 56°C 2’, 72°C 1’) with F-ccatctcatccctgcgtgtctccgacgactacgagtgcgtggaaaatttagaaatgtttaatgtag, R-cctatcccctgtgtgccttggcagtcgactacgagtgcgtaacaaaaaaactaaaaatcataaaaa; IAP-LTR1a: 95°C 15’ 45x (95°C 1’, 51°C 45’’, 72°C 1’) supplemented with HotStart IT Binding Protein (Affymetrix) with F-ccatctcatccctgcgtgtctccgacgactacgagtgcgtttttttttttaggagagttatattt, R-cctatcccctgtgtgccttggcagtcgactacgagtgcgtatcactccctaattaactacaac). Amplicons were purified and further amplified with TruSeq primers including barcodes (5 cycles), pooled and sequenced on an Illumina Miseq machine in a 2x150 bp run. Obtained reads were analyzed using BiQAnalyzer HT. The methylation pattern obtained and the sequence identity, conversion rate of the DNA and the linker are given.
DOI: 10.5281/zenodo.7135108
title: Fibroblast cells dataset

description: High resolution images of fibroblast cell cultures at 10x and 4x magnifications
DOI: 10.5281/zenodo.7135107
title: Fibroblast cells dataset

description: High resolution images of fibroblast cell cultures at 10x and 4x magnifications
DOI: 10.6084/m9.figshare.21258369.v1
title: Fig6_machine_learning

description: Fig6_machine_learning
DOI: 10.6084/m9.figshare.21258369
title: Fig6_machine_learning

description: Fig6_machine_learning
DOI: 10.5281/zenodo.7135146
title: CROCI Performance Dataset

description: A dataset containing CSV files for testing the performance of the CRowdsourced Open Citations Index.
DOI: 10.5281/zenodo.7135145
title: CROCI Performance Dataset

description: A dataset containing CSV files for testing the performance of the CRowdsourced Open Citations Index.
DOI: 10.5281/zenodo.7135148
title: Wiki3DRank demo data for IBERSID 2022

description: Wiki3DRank application demo data for IBERSID 2022. Includes results, SPARQL queries used, and data obtained from Wikidata Query Service and XTools on literary works, music albums, movies, and Tolkien's Legendarium.
DOI: 10.5281/zenodo.7135147
title: Wiki3DRank demo data for IBERSID 2022

description: Wiki3DRank application demo data for IBERSID 2022. Includes results, SPARQL queries used, and data obtained from Wikidata Query Service and XTools on literary works, music albums, movies, and Tolkien's Legendarium.
DOI: 10.6084/m9.figshare.21259152
title: Expression landscape of lncRNAs, circRNAs, and miRNAs in the adult intestine of Haemonchus contortus -- Supplementary files.zip

description: This file provides details information around the most comprehensive atlas of non-coding and coding transcripts and their potential biological functions in the intestine of <em>H. contortus</em>, which is a hematophagous nematode of small ruminants and can cause major productivity and enormous economic losses to agricultural industries worldwide. it also lay the foundation for further functional research, and a profound understanding of intestinal ncRNA profiles and their biology will greatly contribute to the discovery of new therapeutic targets in this worm. <br>
DOI: 10.6084/m9.figshare.21259152.v1
title: Expression landscape of lncRNAs, circRNAs, and miRNAs in the adult intestine of Haemonchus contortus -- Supplementary files.zip

description: This file provides details information around the most comprehensive atlas of non-coding and coding transcripts and their potential biological functions in the intestine of <em>H. contortus</em>, which is a hematophagous nematode of small ruminants and can cause major productivity and enormous economic losses to agricultural industries worldwide. it also lay the foundation for further functional research, and a profound understanding of intestinal ncRNA profiles and their biology will greatly contribute to the discovery of new therapeutic targets in this worm. <br>
DOI: 10.21227/73ne-y825
title: Simultaneously-collected Multimodal Mannequin Lying Pose (SMaL)

description: Simultaneously-collected multimodal Mannequin Lying pose (SMaL) dataset is a infant pose dataset based on a posable mannequin. The SMaL dataset contains a set of 300 unique poses under three cover conditions using three sensor modalities: color imaging, depth sensing, and pressure sensing. It represents the first multimodal dataset for infant pose estimation and the first dataset to explore under the cover pose estimation for infants.
DOI: 10.5281/zenodo.7135199
title: Machine learning on large-scale proteomics data identifies tissue- and cell type-specific proteins

description: Using data from 183 public human data sets from PRIDE, a machine learning model was trained to identify tissue and cell-type specific protein patterns. PRIDE projects were searched with ionbot and tissue/cell type annotation was manually added. Data from physiological samples were used to train a Random Forest model on protein abundances to classify samples into tissues and cell types. Subsequently, a one-vs-all classification and feature importance were used to analyse the most discriminating protein abundances per class. Based on protein abundance alone, the model was able to predict tissues with 98% accuracy, and cell types with 99% accuracy. The F-scores describe a clear view on tissue-specific proteins and tissue-specific protein expression patterns. In-depth feature analysis shows slight confusion between physiologically similar tissues, demonstrating the capacity of the algorithm to detect biologically relevant patterns. These results can in turn inform downstream uses, from identification of the tissue of origin of proteins in complex samples such as liquid biopsies, to studying the proteome of tissue-like samples such as organoids and cell lines
DOI: 10.5281/zenodo.7135198
title: Machine learning on large-scale proteomics data identifies tissue- and cell type-specific proteins

description: Using data from 183 public human data sets from PRIDE, a machine learning model was trained to identify tissue and cell-type specific protein patterns. PRIDE projects were searched with ionbot and tissue/cell type annotation was manually added. Data from physiological samples were used to train a Random Forest model on protein abundances to classify samples into tissues and cell types. Subsequently, a one-vs-all classification and feature importance were used to analyse the most discriminating protein abundances per class. Based on protein abundance alone, the model was able to predict tissues with 98% accuracy, and cell types with 99% accuracy. The F-scores describe a clear view on tissue-specific proteins and tissue-specific protein expression patterns. In-depth feature analysis shows slight confusion between physiologically similar tissues, demonstrating the capacity of the algorithm to detect biologically relevant patterns. These results can in turn inform downstream uses, from identification of the tissue of origin of proteins in complex samples such as liquid biopsies, to studying the proteome of tissue-like samples such as organoids and cell lines
DOI: 10.5281/zenodo.4980609
title: Data and code related to publication "Migration pulsedness alters patterns of allele fixation and local adaptation in a mainland-island model" - Aubree et al. 2021

description: Those data sets and codes are related to the manuscript "Migration pulsedness alters patterns of allele fixation and local adaptation in a mainland-island model" available on BioRXiv. All the information that are necessary to use those data sets and codes are contained in the file "readme.txt".
description: Identifiers of the publication are not yet known at the data publication date.
DOI: 10.5281/zenodo.4980610
title: Data and code related to publication "Migration pulsedness alters patterns of allele fixation and local adaptation in a mainland-island model" - Aubree et al. 2021

description: Those data sets and codes are related to the manuscript "Migration pulsedness alters patterns of allele fixation and local adaptation in a mainland-island model" available on BioRXiv. All the information that are necessary to use those data sets and codes are contained in the file "readme.txt".
description: Identifiers of the publication are not yet known at the data publication date.
DOI: 10.5281/zenodo.7133443
title: Data and code related to publication "Migration pulsedness alters patterns of allele fixation and local adaptation in a mainland-island model" - Aubree et al. 2021

description: Those data sets and codes are related to the manuscript "Migration pulsedness alters patterns of allele fixation and local adaptation in a mainland-island model" available on BioRXiv. All the information that are necessary to use those data sets and codes are contained in the file "readme.txt".
description: Identifiers of the publication are not yet known at the data publication date.
DOI: 10.34740/kaggle/dsv/4275285
title: california_housing_updated
DOI: 10.34740/kaggle/ds/2519021
title: california_housing_updated
DOI: 10.6084/m9.figshare.19783210
title: Melt rate time series from the Filchner-Ronne Ice Shelf

description: Time series of basal melt rates from the Filchner-Ronne Ice Shelf as published in the following paper (please cite if using these data): <br> Vaňková, I., & Nicholls, K. W. (2022). Ocean variability beneath the Filchner-Ronne Ice Shelf inferred from basal melt rate time series. Journal of Geophysical Research: Oceans, 127, e2022JC018879. https://doi. org/10.1029/2022JC018879
DOI: 10.3886/e113186v1-128340
title: Replication data for: Escaping Malthus: Economic Growth and Fertility Change in the Developing World

description: Following mid-twentieth century predictions of Malthusian catastrophe, fertility in the developing world more than halved, while living standards more than doubled. We analyze how fertility change related to economic growth during this episode, using data on 2.3 million women from 255 household surveys. We find different responses to fluctuations and long-run growth, both heterogeneous over the life cycle. Fertility was procyclical but declined and delayed with long-run growth; fluctuations late (but not early) in the reproductive period affected lifetime fertility. The results are consistent with models of the escape from the Malthusian trap, extended with a life cycle and liquidity constraints.
DOI: 10.5281/zenodo.7135295
title: Breakout rooms serve as a suitable tool for interprofessional pre-service online training among students within health, social, and education study programs

description: Research data.
DOI: 10.5281/zenodo.7135294
title: Breakout rooms serve as a suitable tool for interprofessional pre-service online training among students within health, social, and education study programs

description: Research data.
DOI: 10.5519/qd.09dv9b0j
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1021 records)
DOI: 10.6084/m9.figshare.21259230
title: Chemical-anatomical characterization of stems of Asparagaceae species with potential use for lignocellulosic fibers and biofu-els

description: Data from the manuscript of Asparagaceae species: FTIR lignin, FTIR cellulose, extractives and lignocellulose.
DOI: 10.5281/zenodo.7134754
title: Flow cytometry gating 2D: nD x (HIPC, sangerP2.2)

description: Processed data set.
DOI: 10.5281/zenodo.7134753
title: Flow cytometry gating 2D: nD x (HIPC, sangerP2.2)

description: Processed data set.
DOI: 10.6084/m9.figshare.3761562.v2359
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.7135458
title: Dataset of "Interclonal mutually beneficial cooperation mediated by TGF-β1 enhances invasion of breast cancer cells"

description: Original pictures from Figures 1A and 1B. Dataset from Figure 2-6 with data analysis (including Wound Healing assay, Transwell migration and invasion assay) on MCF7, MDA and H2122 AS cell lines
DOI: 10.5281/zenodo.7135457
title: Dataset of "Interclonal mutually beneficial cooperation mediated by TGF-β1 enhances invasion of breast cancer cells"

description: Original pictures from Figures 1A and 1B. Dataset from Figure 2-6 with data analysis (including Wound Healing assay, Transwell migration and invasion assay) on MCF7, MDA and H2122 AS cell lines
DOI: 10.6084/m9.figshare.21259287
title: Urinary Bladder Cancer Images

description: The slides of urinary bladdr cancer tissues were stained with hematoxylin-eosin (HE) in standard histopathological procedures. Formalin-fixed and paraffin-embedded tissue sections were cut into 4 µm thick slices, and were stained using a Tissue-Tek DRS 2000E-D2 Slide Stainer (Sakura Finetek Japan) according to the manufacturer’s instructions. Using the AxioVision SE64Rel.4.9.1.1 (Carl Zeiss Meditec AG, Germany) software, images were captured with an Axio Imager Z.1 (Carl Zeiss Meditec AG, Germany) microscope equipped with an EC Plan-NEOFLUOAR 20x/0.5NA lens.
DOI: 10.34740/kaggle/dsv/4275774
title: Pakistan Urdu Movies 1947 - 2021
DOI: 10.5517/ccdc.csd.cc289drr
title: CCDC 2094414: Experimental Crystal Structure Determination

description: Related Article: Lei Wang, Ani Wang, WenXia Fan, Jie Pan, Zhenzhen Xue, Guoming Wang|2022|Inorg.Chem.|61|14899|doi:10.1021/acs.inorgchem.2c02669
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.22002/6e4zb-6n929
title: Enhanced Superconductivity in Spin-Orbit Proximitized Bernal Bilayer Graphene

description: #Data for Enhanced Superconductivity in Spin-Orbit Proximitized Bernal Bilayer Graphene.
This dataset contains the experimental data from the following paper: Yiran Zhang, Robert Polski, Alex Thomson, Etienne Lantagne-Hurtubise, Cyprian Lewandowski, Haoxin Zhou, Kenji Watanabe, Takashi Taniguchi, Jason Alicea, and Stevan Nadj-Perge, "Enhanced Superconductivity in Spin-Orbit Proximitized Bernal Bilayer Graphene", see also ArXiv: 2205.05087
Excel files are processed experimental data for Fig.1 to Fig.4 in the main text, please refer to Fig1.xlsx to Fig4.xlsx. Within each excel file, the spreadsheet name is the physical quantity of the corresponding panel, together with the unit.
DOI: 10.6084/m9.figshare.20044022
title: Comparison of fractal and grid electrodes for studying the effects of spatial confinement on dissociated retinal neuronal and glial behavior

description: written MATLAB codes and all glial and neuronal measured parameters (raw data) for each electrode sample used in the experiments resulting in the manuscript titled "Controlled assembly of retinal cells on fractal and Euclidean electrodes".
DOI: 10.22002/wecmz-csm13
title: Enhanced Superconductivity in Spin-Orbit Proximitized Bernal Bilayer Graphene v2

description: #Data for Enhanced Superconductivity in Spin-Orbit Proximitized Bernal Bilayer Graphene.
This dataset contains the experimental data from the following paper: Yiran Zhang, Robert Polski, Alex Thomson, Etienne Lantagne-Hurtubise, Cyprian Lewandowski, Haoxin Zhou, Kenji Watanabe, Takashi Taniguchi, Jason Alicea, and Stevan Nadj-Perge, "Enhanced Superconductivity in Spin-Orbit Proximitized Bernal Bilayer Graphene", see also ArXiv: 2205.05087
Excel files are processed experimental data for Fig.1 to Fig.4 in the main text, please refer to Fig1.xlsx to Fig4.xlsx. Within each excel file, the spreadsheet name is the physical quantity of the corresponding panel, together with the unit.
Refer to BLGWSe2.ipynb for code and data analysis.
DOI: 10.6084/m9.figshare.21259359
title: Untitled Item

description: data for
DOI: 10.6084/m9.figshare.21259359.v1
title: Untitled Item

description: data for
DOI: 10.5281/zenodo.7135297
title: Genomic resources for Macadamia tetraphylla and an examination of its historic use as a crop resource in Hawaii

description: <em>Macadamia tetraphylla </em>is a wild relative of the economically valuable crop <em>Macadamia integrifolia. </em>Genomic knowledge of crop wild relatives is central to determining their possible role in breeding programs to mitigate biotic and abiotic stress in the future. The data stored here represent SNP files for material found on Oahu and assembled transcriptomes from different tissue types.
DOI: 10.5281/zenodo.7135296
title: Genomic resources for Macadamia tetraphylla and an examination of its historic use as a crop resource in Hawaii

description: <em>Macadamia tetraphylla </em>is a wild relative of the economically valuable crop <em>Macadamia integrifolia. </em>Genomic knowledge of crop wild relatives is central to determining their possible role in breeding programs to mitigate biotic and abiotic stress in the future. The data stored here represent SNP files for material found on Oahu and assembled transcriptomes from different tissue types.
DOI: 10.5281/zenodo.7135691
title: CINWA: Database of Cultivated plants and their names in the indigenous languages of South America

description: <strong>This repository contains source data for CINWA - Database of Cultivated plants and their names in the indigenous languages of South America. If you use these data please cite the database. Aguilar Panchi, Evelyn Michelle, Saetbyul Lee, Evgenia Brodetsky, and Matthias Urban (eds.). 2022. CINWA - Database of Cultivated plants and their names in the indigenous languages of South America. Version 0.9. Available online at cinwa.org. If you would like to cite specific data entries, please also acknowledge the original source by consulting the reference that is associated with that entry. For example: Cook, Dorothy M., and Frances L. Gralow. 2001. Diccionario bilingüe koreguaje-español español-koreguaje. Santafé de Bogotá: Editorial Alberto Lleras Camargo. In: Aguilar Panchi, Evelyn Michelle, Saetbyul Lee, Evgenia Brodetsky, and Matthias Urban (eds.). 2022. CINWA - Database of Cultivated plants and their names in the indigenous languages of South America. Version 0.9. Available online at cinwa.org.</strong>
DOI: 10.5281/zenodo.7135690
title: CINWA: Database of Cultivated plants and their names in the indigenous languages of South America

description: <strong>This repository contains source data for CINWA - Database of Cultivated plants and their names in the indigenous languages of South America. If you use these data please cite the database. Aguilar Panchi, Evelyn Michelle, Saetbyul Lee, Evgenia Brodetsky, and Matthias Urban (eds.). 2022. CINWA - Database of Cultivated plants and their names in the indigenous languages of South America. Version 0.9. Available online at cinwa.org. If you would like to cite specific data entries, please also acknowledge the original source by consulting the reference that is associated with that entry. For example: Cook, Dorothy M., and Frances L. Gralow. 2001. Diccionario bilingüe koreguaje-español español-koreguaje. Santafé de Bogotá: Editorial Alberto Lleras Camargo. In: Aguilar Panchi, Evelyn Michelle, Saetbyul Lee, Evgenia Brodetsky, and Matthias Urban (eds.). 2022. CINWA - Database of Cultivated plants and their names in the indigenous languages of South America. Version 0.9. Available online at cinwa.org.</strong>
DOI: 10.5281/zenodo.7135715
title: The World Atlas of Language Structures Online

description: <strong>Dryer, Matthew S. & Haspelmath, Martin (eds.) 2013. The World Atlas of Language Structures Online. Leipzig: Max Planck Institute for Evolutionary Anthropology. (Available online at https://wals.info)</strong>
DOI: 10.5281/zenodo.7135714
title: The World Atlas of Language Structures Online

description: <strong>Dryer, Matthew S. & Haspelmath, Martin (eds.) 2013. The World Atlas of Language Structures Online. Leipzig: Max Planck Institute for Evolutionary Anthropology. (Available online at https://wals.info)</strong>