cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bxqt7r
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Russian Federation, Türkiye, Kyrgyzstan, Kazakhstan, Georgia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cervus elaphus Linnaeus, 1758",
 "Year 2010-2019"
 ]
}

 The dataset includes 136 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001259-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29041542
title: Kinetic model assisted synthesis of β-alanine from 3-aminopropionaldehyde by a novel single step enzymatic biotransformation

description: Cell-free enzymatic biotransformation has been the focus of industries for the synthesis of commercially valuable biological compounds. In this study, we explored a kinetic modeling approach to study the novel, single-step, cell-free enzymatic biotransformation of 3-aminopropionaldehyde (3-Apal) to a key drug intermediate, β-alanine. The substrate 3-Apal was converted to β-alanine by the enzyme 3-aminopropionaldehyde dehydrogenase (APALDH), while the enzyme NADH oxidase (NOX) was deployed for cofactor recycling. The enzyme candidates were expressed in recombinant <i>E. coli,</i> with the specific activity of crude lysate being 5 U/mg for APALDH and 1.7 U/mg for NOX. The optimum pH and temperature were identified as pH 7 and 37 °C, respectively. The kinetic parameters were also estimated, as the K<sub>m</sub> values of APALDH for 3-apal and NAD<sup>+</sup> were 0.0375 and 11.96 mM respectively, and the K<sub>m</sub> value of NOX for NADH was 0.07 mM. A kinetic model was developed by incorporating the kinetic parameters obtained from the experiment and from the available literature. With insights from the enzyme kinetics and the simulated kinetic model, the biotransformation was designed in fed-batch mode, and the conversion of 3-Apal to β-alanine up to 15 mM was achieved within 80 min. The model was also validated with the experimental results obtained from the cell-free biotransformation. Further improvement in the yield of β-alanine can be obtained by optimizing the initial cofactor concentration and substrate feed flow rate. Conclusively, the kinetic modeling approach can eliminate the intimidating trial experiments to achieve the maximum product yield in cell-free enzymatic biotransformation.
DOI: 10.6084/m9.figshare.29041542.v1
title: Kinetic model assisted synthesis of β-alanine from 3-aminopropionaldehyde by a novel single step enzymatic biotransformation

description: Cell-free enzymatic biotransformation has been the focus of industries for the synthesis of commercially valuable biological compounds. In this study, we explored a kinetic modeling approach to study the novel, single-step, cell-free enzymatic biotransformation of 3-aminopropionaldehyde (3-Apal) to a key drug intermediate, β-alanine. The substrate 3-Apal was converted to β-alanine by the enzyme 3-aminopropionaldehyde dehydrogenase (APALDH), while the enzyme NADH oxidase (NOX) was deployed for cofactor recycling. The enzyme candidates were expressed in recombinant <i>E. coli,</i> with the specific activity of crude lysate being 5 U/mg for APALDH and 1.7 U/mg for NOX. The optimum pH and temperature were identified as pH 7 and 37 °C, respectively. The kinetic parameters were also estimated, as the K<sub>m</sub> values of APALDH for 3-apal and NAD<sup>+</sup> were 0.0375 and 11.96 mM respectively, and the K<sub>m</sub> value of NOX for NADH was 0.07 mM. A kinetic model was developed by incorporating the kinetic parameters obtained from the experiment and from the available literature. With insights from the enzyme kinetics and the simulated kinetic model, the biotransformation was designed in fed-batch mode, and the conversion of 3-Apal to β-alanine up to 15 mM was achieved within 80 min. The model was also validated with the experimental results obtained from the cell-free biotransformation. Further improvement in the yield of β-alanine can be obtained by optimizing the initial cofactor concentration and substrate feed flow rate. Conclusively, the kinetic modeling approach can eliminate the intimidating trial experiments to achieve the maximum product yield in cell-free enzymatic biotransformation.
DOI: 10.25625/hfb3wx
title: SmartSeparator

description: This dataset accompanies the research article "Smart Separator: Optimizing Conveyor Belt, Vibration Feed, and Drum Speeds of Barrier Eddy Current Separator." The project focuses on applying machine learning techniques—specifically multi-output regression models—to optimize the speeds of critical components in a BECS system for improved separation quality and energy efficiency. The dataset includes a single Excel file containing collected results from 82 experimental scenarios under varying machine conditions. Each row of the Excel file records the input and output parameters used in training and evaluating the predictive models. If you are interested in visual materials (e.g., photos or videos) related to the experimental process, feel free to contact the authors for access. (2025-07-31)
DOI: 10.25625/hfb3wx/bel6j5
title: SpeedOptimizationDataset.ods

description: :unav
DOI: 10.15468/dl.bab7kb
title: Occurrence Download

description: A dataset containing 24802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Sargassum muticum"
 ]
}

 The dataset includes 24802 records from 200 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081107-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6b3v38
title: Occurrence Download

description: A dataset containing 105849 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glyptocephalus cynoglossus"
 ]
}

 The dataset includes 105849 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026911-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8nj3r6
title: Occurrence Download

description: A dataset containing 30853 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Hornungia petraea"
 ]
}

 The dataset includes 30853 records from 437 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026933-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4dvau
title: Occurrence Download

description: A dataset containing 450 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Allium brandegeei",
 "Year 1958-1990"
 ]
}

 The dataset includes 450 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026936-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.md2ugz
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rasbora chrysotaenia)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026937-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nsrte3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Oxybelis aeneus)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026938-250802193616735/datasets/export for details.
DOI: 10.25345/c5959cm6z
title: MassIVE MSV000098765 - ASNA1 E14.5 Mouse Heart Proteomics
title: This dataset contains label-free quantitative (LFQ) proteomics data from embryonic day 14.5 (E14.5) mouse hearts to investigate the effect of ASNA1 knockout on cardiac protein expression. Heart tissues were lysed, proteins were reduced, alkylated, and digested with Trypsin/Lys-C. Peptides were analyzed using an EASY-nanoLC system coupled to an Orbitrap Fusion Lumos Tribrid mass spectrometer (Thermo Fisher Scientific). Data were processed using MaxQuant (version 1.6.11.0) against the Mus musculus UniProt database (July 2022). Protein identification was filtered at a 1% false discovery rate (FDR) at PSM, peptide, and protein levels. Differential expression analysis was performed using a significance threshold of p &lt; 0.05 and fold change &gt;= 1.5.
DOI: 10.15468/dl.kgsnrx
title: Occurrence Download

description: A dataset containing 603 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Oxybelis aeneus)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 603 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026940-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16776959
title: Reconciling coastal sea level rise at tide gauges over 1993-2022

description: Coastal sea level rise is typically observed by tide gauges and satellite altimetry. By nature, these two types of observations represent different definitions of sea level changes. Tide gauges reflect relative sea level changes, but satellite altimetry defines absolute sea level changes. They both suffer from the glacial isostatic adjustment (GIA) effect. Different considerations are required to explain the causes of sea level rise from tide gauges and satellite altimetry. To this end, we synthesize annual sea level rise by integrating ocean reanalysis, and sea level fingerprints that describe modern ocean mass increase. After corrections of GIA and vertical land motions, observations from tide gauges and satellite altimetry are transformed into modern relative sea level rise. At majority locations of tide gauges, sea level budget is closed within uncertainty. This dataset can be used to investigate sea level rise along coast from 1993-2022.
DOI: 10.15468/dl.yjqenp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Oxybelis aeneus)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026939-250802193616735/datasets/export for details.
DOI: 10.15468/dl.2fk6qw
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ACE9060"
 ]
}

 The dataset includes 27 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026941-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3wj5a7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Oxybelis aeneus)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026942-250802193616735/datasets/export for details.
DOI: 10.15468/dl.6rphvk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cetopsis varii)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026943-250802193616735/datasets/export for details.
DOI: 10.15468/dl.jztcu7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Oxybelis aeneus)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026944-250802193616735/datasets/export for details.
DOI: 10.15468/dl.kvw8hy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Oxybelis aeneus)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026945-250802193616735/datasets/export for details.
DOI: 10.15468/dl.pk5kgz
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAA8848"
 ]
}

 The dataset includes 50 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026946-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16748400
title: Data for "Power and Limitations of Linear Programming Decoder for Quantum LDPC Codes"

description: Code used to perform the LP+OSD and BP+OSD decoding simulations and the data that was collected.
DOI: 10.5281/zenodo.16748401
title: Data for "Power and Limitations of Linear Programming Decoder for Quantum LDPC Codes"

description: Code used to perform the LP+OSD and BP+OSD decoding simulations and the data that was collected.
DOI: 10.15468/dl.b9w947
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Devario monticola)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026947-250802193616735/datasets/export for details.
DOI: 10.6084/m9.figshare.29856719
title: all_MAGs_prokka.zip

description: This dataset contains metagenome-assembled genomes (MAGs) reconstructed from four environmental metagenomes collected from the Southern California Bight. A co-assembly was generated using MEGAHIT, and genome binning was performed using a combination of MetaBAT2, CONCOCT, and SemiBin2, followed by refinement and dereplication with MetaWRAP and dRep, respectively.All MAGs were annotated using Prokka and taxonomically classified with GTDB-Tk. Two filtering strategies were applied to select high- and medium-quality MAGs:<b>Initial filter</b>: Completeness ≥50%, contamination ≤10%, resulting in <b>174 MAGs</b>.<b>Stricter filter</b>: Completeness ≥70%, contamination ≤5%, and N50 ≥10,000 bp, resulting in <b>74 high-quality MAGs</b>.This archive includes the annotated Prokka output directories for all 174 MAGs, each labeled with the prefix <code>SPOT_MAG_XXX</code> for clarity and consistency.These annotated MAGs can be used for downstream functional or phylogenetic analyses in marine microbiome research.
DOI: 10.6084/m9.figshare.29856719.v1
title: all_MAGs_prokka.zip

description: This dataset contains metagenome-assembled genomes (MAGs) reconstructed from four environmental metagenomes collected from the Southern California Bight. A co-assembly was generated using MEGAHIT, and genome binning was performed using a combination of MetaBAT2, CONCOCT, and SemiBin2, followed by refinement and dereplication with MetaWRAP and dRep, respectively.All MAGs were annotated using Prokka and taxonomically classified with GTDB-Tk. Two filtering strategies were applied to select high- and medium-quality MAGs:<b>Initial filter</b>: Completeness ≥50%, contamination ≤10%, resulting in <b>174 MAGs</b>.<b>Stricter filter</b>: Completeness ≥70%, contamination ≤5%, and N50 ≥10,000 bp, resulting in <b>74 high-quality MAGs</b>.This archive includes the annotated Prokka output directories for all 174 MAGs, each labeled with the prefix <code>SPOT_MAG_XXX</code> for clarity and consistency.These annotated MAGs can be used for downstream functional or phylogenetic analyses in marine microbiome research.
DOI: 10.15468/dl.bjd9nz
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Dipsas albifrons)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026949-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k2jta8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Dipsas albifrons)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026950-250802193616735/datasets/export for details.