cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6071654
title: Dataset from Evidences of strong sources of DFe and DMn in Ryder Bay, Western Antarctic Peninsula

description: The spatial distribution, biogeochemical cycling and external sources of dissolved iron and dissolved manganese (DFe and DMn) were investigated in Ryder Bay, a small coastal embayment of the West Antarctic Peninsula, during Austral summer (2013 and 2014). Dissolved concentrations were measured throughout the water column at 11 stations within Ryder Bay. The concentration ranges of DFe and DMn were large, between 0.58 and 32.7 nM, and between 0.18 and 26.2 nM, respectively, exhibiting strong gradients from the surface to the bottom. Surface concentrations of DFe and DMn were higher than concentrations reported for the Southern Ocean and coastal Antarctic waters, and extremely high concentrations were detected in deep water. Glacial meltwater and shallow sediments are likely to be the main sources of DFe and DMn in the euphotic zone, while lateral advection associated with local sediment resuspension and vertical mixing are significant sources for intermediate and deep waters. During summer, vertical mixing of intermediate and deep waters and sediment resuspension occurring from Marguerite Trough to Ryder Bay are thought to be amplified by a series of overflows at the sills, enhancing the input of Fe and Mn from bottom sediment and increasing their concentrations up to the euphotic layer.This article is part of the theme issue ‘The marine system of the West Antarctic Peninsula: status and strategy for progress in a region of rapid change’.
DOI: 10.6084/m9.figshare.6071654.v1
title: Dataset from Evidences of strong sources of DFe and DMn in Ryder Bay, Western Antarctic Peninsula

description: The spatial distribution, biogeochemical cycling and external sources of dissolved iron and dissolved manganese (DFe and DMn) were investigated in Ryder Bay, a small coastal embayment of the West Antarctic Peninsula, during Austral summer (2013 and 2014). Dissolved concentrations were measured throughout the water column at 11 stations within Ryder Bay. The concentration ranges of DFe and DMn were large, between 0.58 and 32.7 nM, and between 0.18 and 26.2 nM, respectively, exhibiting strong gradients from the surface to the bottom. Surface concentrations of DFe and DMn were higher than concentrations reported for the Southern Ocean and coastal Antarctic waters, and extremely high concentrations were detected in deep water. Glacial meltwater and shallow sediments are likely to be the main sources of DFe and DMn in the euphotic zone, while lateral advection associated with local sediment resuspension and vertical mixing are significant sources for intermediate and deep waters. During summer, vertical mixing of intermediate and deep waters and sediment resuspension occurring from Marguerite Trough to Ryder Bay are thought to be amplified by a series of overflows at the sills, enhancing the input of Fe and Mn from bottom sediment and increasing their concentrations up to the euphotic layer.This article is part of the theme issue ‘The marine system of the West Antarctic Peninsula: status and strategy for progress in a region of rapid change’.
DOI: 10.6084/m9.figshare.6071570
title: Revision and new proposals regarding <i>Salvia officinalis</i> communities after new findings from the Abruzzo region, Central Adriatic Italy

description: <i>Salvia officinalis</i> communities are not common in Italy. Until recently, the studies carried out in Italy have generally not always been thorough regarding the physiognomic type of these communities and have not clearly distinguished between the real garrigues and the pasture communities (with more or less abundant Chamaephytes). A finer approach, allowing a correct interpretation of micro-mosaic patchiness, is necessary when the “elementary area” is chosen to be analyzed, in order to permit this kind of distinction. In the Abruzzo region, on the Central Adriatic side of Italy, this species is quite rare and is exclusively represented by the <i>angustifolia</i> variety. Actually, only few <i>S. officinalis</i> communities were known and studied in the Abruzzo region. New localities were found for this species and related communities. A newly uploaded dataset from the region is documented here, combining literature review data and new relevés, and is analyzed by multivariate methods. Results show that the <i>Salvia officinalis</i> garrigues of the Abruzzo region are not all attributable to the same plant association, as the coenological features of these communities are quite variable, depending mainly on geomorphological and climate features. Only half of the literature relevés previously attributed to the <i>Saturejo montanae</i>-<i>Salvietum angustifoliae</i> association are clearly ascribable to it, while the other half concerns anomalous aspects, poor in diagnostic species. A new set of diagnostic and differential species is proposed for that association; and two new variants have been proposed. We also propose a new association: <i>Euphorbio spinosae</i>-<i>Salvietum angustifoliae</i>, with two sub-associations, both found in newly studied localities. Further similar thorough reviews are desirable for other associations described in South-Eastern Europe, taking into account a fine separation between chamaephyte dominated communities and those that are mainly hemicryptophytic.
DOI: 10.6084/m9.figshare.6071570.v1
title: Revision and new proposals regarding <i>Salvia officinalis</i> communities after new findings from the Abruzzo region, Central Adriatic Italy

description: <i>Salvia officinalis</i> communities are not common in Italy. Until recently, the studies carried out in Italy have generally not always been thorough regarding the physiognomic type of these communities and have not clearly distinguished between the real garrigues and the pasture communities (with more or less abundant Chamaephytes). A finer approach, allowing a correct interpretation of micro-mosaic patchiness, is necessary when the “elementary area” is chosen to be analyzed, in order to permit this kind of distinction. In the Abruzzo region, on the Central Adriatic side of Italy, this species is quite rare and is exclusively represented by the <i>angustifolia</i> variety. Actually, only few <i>S. officinalis</i> communities were known and studied in the Abruzzo region. New localities were found for this species and related communities. A newly uploaded dataset from the region is documented here, combining literature review data and new relevés, and is analyzed by multivariate methods. Results show that the <i>Salvia officinalis</i> garrigues of the Abruzzo region are not all attributable to the same plant association, as the coenological features of these communities are quite variable, depending mainly on geomorphological and climate features. Only half of the literature relevés previously attributed to the <i>Saturejo montanae</i>-<i>Salvietum angustifoliae</i> association are clearly ascribable to it, while the other half concerns anomalous aspects, poor in diagnostic species. A new set of diagnostic and differential species is proposed for that association; and two new variants have been proposed. We also propose a new association: <i>Euphorbio spinosae</i>-<i>Salvietum angustifoliae</i>, with two sub-associations, both found in newly studied localities. Further similar thorough reviews are desirable for other associations described in South-Eastern Europe, taking into account a fine separation between chamaephyte dominated communities and those that are mainly hemicryptophytic.
DOI: 10.6084/m9.figshare.6071045
title: Theoretical ribosomal protein mass fingerprint of Mus musculus

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Mus musculus.</i><br><br>
DOI: 10.6084/m9.figshare.6071045.v1
title: Theoretical ribosomal protein mass fingerprint of Mus musculus

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Mus musculus.</i><br><br>
DOI: 10.6084/m9.figshare.6071042
title: Theoretical ribosomal protein mass fingerprint of Rattus norvegicus

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Rattus norvegicus.</i><br><br>
DOI: 10.6084/m9.figshare.6071042.v1
title: Theoretical ribosomal protein mass fingerprint of Rattus norvegicus

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Rattus norvegicus.</i><br><br>
DOI: 10.6084/m9.figshare.6070952
title: Journal Information

description: This dataset summarizes the information for 11 journals, including the year for which the p-values of the published articles were extracted, the impact factor for the respective year and the acronym used in the R code for this study.
DOI: 10.6084/m9.figshare.6070952.v1
title: JournalInformation

description: This dataset summarizes the information for 11 journals, including the year for which the p-values of the published articles were extracted, the impact factor for the respective year and the acronym used in the R code for this study.
DOI: 10.6084/m9.figshare.6070859
title: 2018 AACR Drug Target Explorer

description: In the modern drug discovery process, high-throughput screens of drugs are a common and important step in the identification of novel treatments. Frequently, these screens are phenotypic; i.e. they test compounds with known or unknown mechanisms of action in a biological model and evaluate a phenotype. While these types of screens facilitate the identification of active molecules, they also present challenges, including:<br>(1) Identifying the mechanism(s) of action of a compound(2) literature frequently disagrees on drug targets(3) Identifying common targets within screen hits(4) Interpretation of polypharmacologic compounds(5) Identifying structurally/functionally related molecules <br>Multiple tools and databases exist that address these challenges. The majority of these tools allow users to explore drug-target relationships. However, none of the tools fulfill all of the criteria listed in Table 1 of the poster. To address this, we developed the Drug-Target Explorer. This tool enables the user to:<br><br>(1) look up targets for molecules,(2) explore networks of targets and drugs,(3) perform gene list enrichment of targets(4) compare query molecules to cancer screening datasets(5) discover bioactive molecules using a query target<br>We anticipate that the users will include biologists and chemists involved in drug discovery who are interested in performing hypothesis generation of human targets for novel molecules, identifying off-targets for bioactive small molecules of interest, and exploring of the polypharmacologic nature of small molecules.
DOI: 10.6084/m9.figshare.6070760.v1
title: Label legend for full 108 structure atlases

description: A list of anatomical structures available in the histologically-derived atlas from Chakravarty et al., (2006), and in the five resulting atlases generated using the atlas-to-template warping technique.
DOI: 10.6084/m9.figshare.6070757.v1
title: Label legend for final atlases of the striatum, globus pallidus, and thalamus

description: Legend for label values of final atlas labels for the striatum, globus pallidus, and thalamus.
DOI: 10.6084/m9.figshare.6070757
title: Label legend for final atlases of the striatum, globus pallidus, and thalamus

description: Legend for label values of final atlas labels for the striatum, globus pallidus, and thalamus.
DOI: 10.6084/m9.figshare.6070703
title: Examining Chi-Square Test Statistics Under Conditions of Large Model Size and Ordinal Data

description: This study examined the effect of model size on the chi-square test statistics obtained from ordinal factor analysis models. The performance of six robust chi-square test statistics were compared across various conditions, including number of observed variables (<i>p</i>), number of factors, sample size, model (mis)specification, number of categories, and threshold distribution. Results showed that the unweighted least squares (ULS) robust chi-square statistics generally outperform the diagonally weighted least squares (DWLS) robust chi-square statistics. The ULSM estimator performed the best overall. However, when fitting ordinal factor analysis models with a large number of observed variables and small sample size, the ULSM-based chi-square tests may yield empirical variances that are noticeably larger than the theoretical values and inflated Type I error rates. On the other hand, when the number of observed variables is very large, the mean- and variance-corrected chi-square test statistics (e.g., based on ULSMV and WLSMV) could produce empirical variances conspicuously smaller than the theoretical values and Type I error rates lower than the nominal level, and demonstrate lower power rates to reject misspecified models. Recommendations for applied researchers and future empirical studies involving large models are provided.
DOI: 10.6084/m9.figshare.6070703.v1
title: Examining Chi-Square Test Statistics Under Conditions of Large Model Size and Ordinal Data

description: This study examined the effect of model size on the chi-square test statistics obtained from ordinal factor analysis models. The performance of six robust chi-square test statistics were compared across various conditions, including number of observed variables (<i>p</i>), number of factors, sample size, model (mis)specification, number of categories, and threshold distribution. Results showed that the unweighted least squares (ULS) robust chi-square statistics generally outperform the diagonally weighted least squares (DWLS) robust chi-square statistics. The ULSM estimator performed the best overall. However, when fitting ordinal factor analysis models with a large number of observed variables and small sample size, the ULSM-based chi-square tests may yield empirical variances that are noticeably larger than the theoretical values and inflated Type I error rates. On the other hand, when the number of observed variables is very large, the mean- and variance-corrected chi-square test statistics (e.g., based on ULSMV and WLSMV) could produce empirical variances conspicuously smaller than the theoretical values and Type I error rates lower than the nominal level, and demonstrate lower power rates to reject misspecified models. Recommendations for applied researchers and future empirical studies involving large models are provided.
DOI: 10.6084/m9.figshare.6069653.v1
title: Histologically-derived atlas, right hemisphere (MINC format)

description: Histological segmentation of 108 structures for the right hemisphere from Chakravarty et al., (2006)
DOI: 10.6084/m9.figshare.6069653
title: Histologically-derived atlas, right hemisphere (MINC format)

description: Histological segmentation of 108 structures for the right hemisphere from Chakravarty et al., (2006)
DOI: 10.6084/m9.figshare.6069047
title: Model Atlas (MINC format)

description: Majority-voting label fusion of the labels of the striatum, globus pallidus, and thalamus from brains 1-5
DOI: 10.6084/m9.figshare.6069047.v1
title: Model Atlas (MINC format)

description: Majority-voting label fusion of the labels of the striatum, globus pallidus, and thalamus from brains 1-5
DOI: 10.6084/m9.figshare.6069044
title: Model Atlas (NIfTI format)

description: Majority-voting label fusion of the labels of the striatum, globus pallidus, and thalamus from brains 1-5
DOI: 10.6084/m9.figshare.6069044.v1
title: Model Atlas (NIfTI format)

description: Majority-voting label fusion of the labels of the striatum, globus pallidus, and thalamus from brains 1-5
DOI: 10.6084/m9.figshare.6069038
title: Model (NIfTI format)

description: Group-wise average of brains 1-5
DOI: 10.6084/m9.figshare.6069038.v1
title: Model (NIfTI format)

description: Group-wise average of brains 1-5
DOI: 10.6084/m9.figshare.6069035
title: Model (MINC format)

description: Group-wise average of brains 1-5
DOI: 10.6084/m9.figshare.6069035.v1
title: Model (MINC format)

description: Group-wise average of brains 1-5
DOI: 10.6084/m9.figshare.6068831
title: Labels of the striatum, globus pallidus, and thalamus for brain2 (NIfTI format)

description: Final atlas created from the atlas-to-template warping technique performed using the mask_script code to obtain labels for the striatum, globus pallidus, and thalamus. Label legend: 1 - left striatum; 2 - left globus pallidus; 3 - left thalamus; 4 - right striatum; 5 - right globus pallidus; 6 - right thalamus
DOI: 10.6084/m9.figshare.6068831.v1
title: Labels of the striatum, globus pallidus, and thalamus for brain2 (NIfTI format)

description: Final atlas created from the atlas-to-template warping technique performed using the mask_script code to obtain labels for the striatum, globus pallidus, and thalamus. Label legend: 1 - left striatum; 2 - left globus pallidus; 3 - left thalamus; 4 - right striatum; 5 - right globus pallidus; 6 - right thalamus
DOI: 10.6084/m9.figshare.6068822
title: Pseudo-MRI for brain5, left hemisphere (NIfTI format)

description: Pseudo-MRIs was created by manually assigning an intensity value to each label value of the hisotologically-derived atlas based on the intensity of the matching structure in MRI template for which it is registered to (brain5); done separately for each hemisphere
DOI: 10.6084/m9.figshare.6068822.v1
title: Pseudo-MRI for brain5, left hemisphere (NIfTI format)

description: Pseudo-MRIs was created by manually assigning an intensity value to each label value of the hisotologically-derived atlas based on the intensity of the matching structure in MRI template for which it is registered to (brain5); done separately for each hemisphere
DOI: 10.6084/m9.figshare.6068819
title: Pseudo-MRI for brain5, right hemisphere (NIfTI format)

description: Pseudo-MRI was created by manually assigning an intensity value to each label value of the hisotologically-derived atlas based on the intensity of the matching structure in MRI template for which it is registered to (brain5); done separately for each hemisphere
DOI: 10.6084/m9.figshare.6068819.v1
title: Pseudo-MRI for brain5, right hemisphere (NIfTI format)

description: Pseudo-MRI was created by manually assigning an intensity value to each label value of the hisotologically-derived atlas based on the intensity of the matching structure in MRI template for which it is registered to (brain5); done separately for each hemisphere
DOI: 10.6084/m9.figshare.6068816
title: Pseudo-MRI for brain5, right hemisphere (MINC format)

description: Pseudo-MRI was created by manually assigning an intensity value to each label value of the hisotologically-derived atlas based on the intensity of the matching structure in MRI template for which it is registered to (brain5); done separately for each hemisphere
DOI: 10.6084/m9.figshare.6068816.v1
title: Pseudo-MRI for brain5, right hemisphere (MINC format)

description: Pseudo-MRI was created by manually assigning an intensity value to each label value of the hisotologically-derived atlas based on the intensity of the matching structure in MRI template for which it is registered to (brain5); done separately for each hemisphere
DOI: 10.6084/m9.figshare.6068813
title: Pseudo-MRI for brain5, left hemisphere (MINC format)

description: Pseudo-MRIs was created by manually assigning an intensity value to each label value of the hisotologically-derived atlas based on the intensity of the matching structure in MRI template for which it is registered to (brain5); done separately for each hemisphere
DOI: 10.6084/m9.figshare.6068813.v1
title: Pseudo-MRI for brain5, left hemisphere (MINC format)

description: Pseudo-MRIs was created by manually assigning an intensity value to each label value of the hisotologically-derived atlas based on the intensity of the matching structure in MRI template for which it is registered to (brain5); done separately for each hemisphere
DOI: 10.6084/m9.figshare.6068810
title: Brain1 MRI (MINC format)

description: High-resolution T1-weighted image of brain1 acquired on a 3T GE Discovery MR 750 system at 0.3mm isotropic voxels.
DOI: 10.6084/m9.figshare.6068810.v1
title: Brain1 MRI (MINC format)

description: High-resolution T1-weighted image of brain1 acquired on a 3T GE Discovery MR 750 system at 0.3mm isotropic voxels.
DOI: 10.6084/m9.figshare.6068807
title: Brain 3 MRI (MINC format)

description: High-resolution T1-weighted image of brain1 acquired on a 3T GE Discovery MR 750 system at 0.3mm isotropic voxels.
DOI: 10.6084/m9.figshare.6068807.v1
title: Brain 3 MRI (MINC format)

description: High-resolution T1-weighted image of brain1 acquired on a 3T GE Discovery MR 750 system at 0.3mm isotropic voxels.
DOI: 10.6084/m9.figshare.6068804
title: Brain 2 MRI (MINC format)

description: High-resolution T1-weighted image of brain1 acquired on a 3T GE Discovery MR 750 system at 0.3mm isotropic voxels.
DOI: 10.6084/m9.figshare.6068804.v1
title: Brain 2 MRI (MINC format)

description: High-resolution T1-weighted image of brain1 acquired on a 3T GE Discovery MR 750 system at 0.3mm isotropic voxels.
DOI: 10.6084/m9.figshare.6068693
title: Seeing the woods through the saplings: Using wood density to assess the recovery of human-modified Amazonian forests

description: Data used in the paper entitled '<b>Seeing the woods through the saplings: </b><b>Using wood density to assess the recovery of human-modified Amazonian forests'</b>
DOI: 10.6084/m9.figshare.6068693.v1
title: Seeing the woods through the saplings: Using wood density to assess the recovery of human-modified Amazonian forests

description: Data used in the paper entitled '<b>Seeing the woods through the saplings: </b><b>Using wood density to assess the recovery of human-modified Amazonian forests'</b>
DOI: 10.6084/m9.figshare.6068435.v1
title: Effect of community based practise of Baduanjin

description: Adults with cardiovascular diseases in community have lower level of education, most of whom have a low monthly income; thus, community dwelling cardiovascular disease patients are more suitable for an economic program to persist their long term management of the disease. Baduanjin is a traditional Chinese medicine regimen with less physical and cognitive demand; community based exercise of Baduanjin could help to increase self-efficacy in patients with cardiovascular diseases, thus better self management of rehabilitation process.
DOI: 10.6084/m9.figshare.6068234
title: Labels of the striatum, globus pallidus, and thalamus for brain1 (MINC format)

description: Final atlas created from the atlas-to-template warping technique performed using the mask_script code to obtain labels for the striatum, globus pallidus, and thalamus. Label legend: 1 - left striatum; 2 - left globus pallidus; 3 - left thalamus; 4 - right striatum; 5 - right globus pallidus; 6 - right thalamus
DOI: 10.6084/m9.figshare.6068234.v1
title: Labels of the striatum, globus pallidus, and thalamus for brain1 (MINC format)

description: Final atlas created from the atlas-to-template warping technique performed using the mask_script code to obtain labels for the striatum, globus pallidus, and thalamus. Label legend: 1 - left striatum; 2 - left globus pallidus; 3 - left thalamus; 4 - right striatum; 5 - right globus pallidus; 6 - right thalamus
DOI: 10.6084/m9.figshare.6068222
title: Surface representation of left globus pallidus

description: 3D rendering of model atlas label to create surface representation of the left globus pallidus
DOI: 10.6084/m9.figshare.6068222.v1
title: Surface representation of left globus pallidus

description: 3D rendering of model atlas label to create surface representation of the left globus pallidus
DOI: 10.6084/m9.figshare.6068219
title: Brain 4 MRI (MINC format)

description: High-resolution T1-weighted image of brain1 acquired on a 3T GE Discovery MR 750 system at 0.3mm isotropic voxels.