cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1617743.v2
title: A systematic review of ecological prevention methods of Lyme disease (Lyme borreliosis) in humans

description: This review analyzed previous research conducted regarding Lyme disease ecological prevention methods. A formalized systematic review search using Web of Science was performed. The terms ‘ecological Lyme disease prevention’ OR ‘arcaracide Lyme disease’ OR ‘insecticide Lyme disease’ were used in the search, and 140 publications were produced that were published in the year 1990 or later. Nine duplicate publications were removed. The abstracts were screened and one publication that was produced in a foreign language was removed. The full articles were screened, and 38 review articles were excluded. The remaining publications were thoroughly screened for relevance to the review topic. 52 publications were excluded, for reasons including that the experiments related to a different disease, Lyme disease prevention in pets, public surveys, DNA sequencing or analysis of B. burgdorferi, and computer models. The studies analyzed in this review were published in 11 different peer-reviewed journals. The majority of studies were published in the Journal of Medical Entomology (52.5%) and Vector-Borne and Zoonotic Diseases (15%).
DOI: 10.6084/m9.figshare.1617748.v1
title: La cocina preelectoral del CIS. Diciembre de 2015

description: La cocina preelectoral del CIS. Diciembre de 2015. Diferencia entre % de estimación de voto y % de estimación de escaños.
DOI: 10.6084/m9.figshare.1617743.v1
title: A systematic review of ecological prevention methods of Lyme disease (Lyme borreliosis) in humans

description: This review analyzed previous research conducted regarding Lyme disease ecological prevention methods. A formalized systematic review search using Web of Science was performed. The terms ‘ecological Lyme disease prevention’ OR ‘arcaracide Lyme disease’ OR ‘insecticide Lyme disease’ were used in the search, and 140 publications were produced that were published in the year 1990 or later. Nine duplicate publications were removed. The abstracts were screened and one publication that was produced in a foreign language was removed. The full articles were screened, and 38 review articles were excluded. The remaining publications were thoroughly screened for relevance to the review topic. 52 publications were excluded, for reasons including that the experiments related to a different disease, Lyme disease prevention in pets, public surveys, DNA sequencing or analysis of B. burgdorferi, and computer models. The studies analyzed in this review were published in 11 different peer-reviewed journals. The majority of studies were published in the Journal of Medical Entomology (52.5%) and Vector-Borne and Zoonotic Diseases (15%).
DOI: 10.6084/m9.figshare.1617748.v3
title: La cocina preelectoral del CIS. Diciembre de 2015

description: La cocina preelectoral del CIS. Diciembre de 2015. Diferencia entre % de estimación de voto y % de estimación de escaños.
DOI: 10.6084/m9.figshare.1617788.v2
title: Cross flow expt dataset

description: Prelim dataset for flow tank experiments
DOI: 10.6084/m9.figshare.1617545
title: A test of the stress-gradient hypothesis including abiotic stress and consumer pressure during an extreme drought year

description: The stress gradient hypothesis original purposed the frequency of plant interactions along countervailing gradients of abiotic stress and consumer pressure. However, research to date has studied these two stressors in isolation rather than together, thereby potentially neglecting the interaction of these factors on plant composition. During an extreme drought in the arid central valley of California, USA, we artificially manipulated a soil moisture gradient and erected animal exclosures to examine the interactions between dominant shrubs and the subordinate annual community. There was a high frequency of positive interactions between shrubs and the annual community at all levels of soil moisture and consumer pressure. Shrub facilitation and water addition displayed similar effect sizes on plant communities, however, the shrub facilitation effect was significantly stronger in watered plots. Shrubs and positive interactions maintain productivity of annual plant communities at environmental extremes despite reductions in droughts stress or consumer pressure and these positive effects are even more pronounced with water addition. The relationship between consumer pressure and abiotic stress on plant interactions is non-linear, particularly since shrubs can facilitate understorey plants through a series of different mechanisms.
DOI: 10.6084/m9.figshare.1617748.v2
title: La cocina preelectoral del CIS. Diciembre de 2015

description: La cocina preelectoral del CIS. Diciembre de 2015. Diferencia entre % de estimación de voto y % de estimación de escaños.
DOI: 10.6084/m9.figshare.1617538
title: Huizhou in the Late Imperial Yangzi River Delta

description: Map pertaining to entire issue
DOI: 10.6084/m9.figshare.1617539
title: Bayesian identification of bacterial strains from sequencing data

description: Benchmarking data for bacterial strain identification as published in Microbial Genomics in the following article: 'Bayesian identification of bacterial strains from sequencing data' [DOI: 10.1099/mgen.0.000075]
DOI: 10.6084/m9.figshare.1617738.v1
title: Author's Response: HPV vaccination in India

description: The Indian government is quite correct not to prioritize HPV vaccination as a public health priority
DOI: 10.6084/m9.figshare.1617538.v1
title: Huizhou in the Late Imperial Yangzi River Delta

description: Map pertaining to entire issue
DOI: 10.6084/m9.figshare.1617539.v1
title: Benchmarking data for bacterial strain identification

description: Benchmarking data for bacterial strain identification. See http://arxiv.org/abs/1511.06546 for details.
DOI: 10.6084/m9.figshare.1617519
title: Exp1_Sample1

description: Please view the full "Benchmarking data for bacterial strain identification set" http://figshare.com/articles/Benchmarking_data_for_bacterial_strain_identification/1617539
DOI: 10.6084/m9.figshare.1617539.v2
title: Benchmarking data for bacterial strain identification

description: Benchmarking data for bacterial strain identification. See http://arxiv.org/abs/1511.06546 for details.
DOI: 10.6084/m9.figshare.1617519.v1
title: Benchmarking data for bacterial strain identification

description: See http://arxiv.org/abs/1511.06546 for details
DOI: 10.6084/m9.figshare.1617516
title: Caffeine consumption and memory task performance - Systematic Review

description: The search criteria included an electronic search of “Web of Science” database from the commencement of the databases to 27 November 2015. The search terms used were “coffee” AND “memory” AND “cognit*” in topic area of search in order to conduct a review of caffeine consumption and performance in memory tasks. The search resulted in 80 articles out of which ten were excluded during screening of document type for only primary articles. Further screening of eligibility for articles was done where caffeine consumption was reported either by self-reports of daily caffeine intake by subjects or clinical induction of caffeine by researchers and if memory tests was performed to measure memory. This final screening resulted in 24 articles from which research area of study, caffeine assessed, population studied, caffeine treatment/ level studied and if it was induced or reported, number and names of memory tests used, aspect of memory tested for and finally which caffeine group showed significant effect on memory and on which aspect of memory. The specific extraction factors were used to review the extent of memory tests used to test caffeine’s effect on performance in different aspects of memory.
DOI: 10.6084/m9.figshare.1617539.v3
title: Benchmarking data for bacterial strain identification

description: Benchmarking data for bacterial strain identification. See http://arxiv.org/abs/1511.06546 for details.
DOI: 10.6084/m9.figshare.1617519.v3
title: Exp1_Sample1

description: Please view the full "Benchmarking data for bacterial strain identification set" http://figshare.com/articles/Benchmarking_data_for_bacterial_strain_identification/1617539
DOI: 10.6084/m9.figshare.1617504
title: Tutorial Data for MGKit

description: Tutorial Data to use in case the tutorial script can't be completed
DOI: 10.6084/m9.figshare.1617519.v2
title: Benchmarking data for bacterial strain identification: Exp1_Sample1

description: Benchmarking data for bacterial strain identification See http://arxiv.org/abs/1511.06546 for details
DOI: 10.6084/m9.figshare.1617503
title: Systematic Review of the Functional Role of AMPK in mammalian tissues

description: METHODS In order to analyze current research on AMPK, a systematic literature review using the York University Library research guides was conducted using Web of Science from all years. Thursday, November 12 2015 a literary search was administered using the basic search terms: ‘AMPK*’ AND ‘energy’ AND ‘exercise’ while selecting topic from the drop-down menu. This initially rendered 349 publications from the web of science core collection. Using the refine results toolbar, unrelated topics were removed. This included: Orthopedics, Mathematics and the like. The refining process rendered a total of 137 search results from all databases. These publications were further refined to include Cardiovascular system cardiology and sport sciences, thus producing a total of (40) publications. The refined cardiovascular system cardiology and sport science publications were then exported into an excel sheet using the create citation report tool on web of science. Data was manually sorted according to relevance of keywords within the abstract including: (i) types of exercise subjects underwent (ii) affected bodily function, (iii) likelihood of damage reversal, (iv) publication date and number of studies. Abstract of all (40) articles were reviewed and assessed for relevance to topic. Excluded articles included those that made no mention of AMPK in the body, procedure in testing for AMPK levels and type of exercise. Of the (40) reviewed articles, (6) were removed with a total of (34) articles remaining. These were sorted manually upon reviewing the text in full, (34) of the remaining articles after thorough assessment produced a total number of (32) articles. (32) of the remaining articles spanned from 2001-2015 in publication date.
DOI: 10.6084/m9.figshare.1617539.v4
title: Benchmarking data for bacterial strain identification

description: Benchmarking data for bacterial strain identification. See http://arxiv.org/abs/1511.06546 for details.
DOI: 10.6084/m9.figshare.1617503.v1
title: Systematic Review of the Functional Role of AMPK in mammalian tissues

description: METHODS In order to analyze current research on AMPK, a systematic literature review using the York University Library research guides was conducted using Web of Science from all years. Thursday, November 12 2015 a literary search was administered using the basic search terms: ‘AMPK*’ AND ‘energy’ AND ‘exercise’ while selecting topic from the drop-down menu. This initially rendered 349 publications from the web of science core collection. Using the refine results toolbar, unrelated topics were removed. This included: Orthopedics, Mathematics and the like. The refining process rendered a total of 137 search results from all databases. These publications were further refined to include Cardiovascular system cardiology and sport sciences, thus producing a total of (40) publications. The refined cardiovascular system cardiology and sport science publications were then exported into an excel sheet using the create citation report tool on web of science. Data was manually sorted according to relevance of keywords within the abstract including: (i) types of exercise subjects underwent (ii) affected bodily function, (iii) likelihood of damage reversal, (iv) publication date and number of studies. Abstract of all (40) articles were reviewed and assessed for relevance to topic. Excluded articles included those that made no mention of AMPK in the body, procedure in testing for AMPK levels and type of exercise. Of the (40) reviewed articles, (6) were removed with a total of (34) articles remaining. These were sorted manually upon reviewing the text in full, (34) of the remaining articles after thorough assessment produced a total number of (32) articles. (32) of the remaining articles spanned from 2001-2015 in publication date.
DOI: 10.6084/m9.figshare.1617504.v2
title: Tutorial Data for MGKit

description: Tutorial Data to use in case the tutorial script can't be completed
DOI: 10.6084/m9.figshare.1617504.v1
title: Tutorial Data for MGKit

description: Tutorial Data to use in case the tutorial script can't be completed
DOI: 10.6084/m9.figshare.1617539.v5
title: Benchmarking data for bacterial strain identification

description: Benchmarking data for bacterial strain identification. See http://arxiv.org/abs/1511.06546 for details.
DOI: 10.6084/m9.figshare.1617205
title: Computationally Efficient Changepoint Detection for a Range of Penalties

description: In the multiple changepoint setting, various search methods have been proposed, which involve optimizing either a constrained or penalized cost function over possible numbers and locations of changepoints using dynamic programming. Recent work in the penalized optimization setting has focused on developing an exact pruning-based approach that, under certain conditions, is linear in the number of data points. Such an approach naturally requires the specification of a penalty to avoid under/over-fitting. Work has been undertaken to identify the appropriate penalty choice for data-generating processes with known distributional form, but in many applications the model assumed for the data is not correct and these penalty choices are not always appropriate. To this end, we present a method that enables us to find the solution path for all choices of penalty values across a continuous range. This permits an evaluation of the various segmentations to identify a suitable penalty choice. The computational complexity of this approach can be linear in the number of data points and linear in the difference between the number of changepoints in the optimal segmentations for the smallest and largest penalty values. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.1617205.v1
title: Computationally Efficient Changepoint Detection for a Range of Penalties

description: In the multiple changepoint setting, various search methods have been proposed, which involve optimizing either a constrained or penalized cost function over possible numbers and locations of changepoints using dynamic programming. Recent work in the penalized optimization setting has focused on developing an exact pruning-based approach that, under certain conditions, is linear in the number of data points. Such an approach naturally requires the specification of a penalty to avoid under/over-fitting. Work has been undertaken to identify the appropriate penalty choice for data-generating processes with known distributional form, but in many applications the model assumed for the data is not correct and these penalty choices are not always appropriate. To this end, we present a method that enables us to find the solution path for all choices of penalty values across a continuous range. This permits an evaluation of the various segmentations to identify a suitable penalty choice. The computational complexity of this approach can be linear in the number of data points and linear in the difference between the number of changepoints in the optimal segmentations for the smallest and largest penalty values. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.1617539.v6
title: Benchmarking data for bacterial strain identification

description: Benchmarking data for bacterial strain identification. See http://arxiv.org/abs/1511.06546 for details.
DOI: 10.6084/m9.figshare.1616968
title: A systematic Review: Aquatic Therapy on Arthritis

description: The following key words were searched using the Web of Science database: “aqua*” AND “exercise” AND “*arthritis”. The year of the publication was not restricted to any specific year. The language of the studies was limited to English and the resulting database was extracted on an excel file. After the extraction of the database, studies without the words aquatic, exercise or arthritis in the titles were excluded from the study. Meta-analyses and systematic reviews were excluded from the database as well. Studies not relating to aquatic therapy and any form of arthritis were not included. Only studies in which subjects selected were diagnosed with any form of arthritis were included. Reports where subjects were not inside the water performing an exercise protocol was excluded. Reports that consisted of both aquatic therapy and class education outside the pool were also included. There was no exclusion in water temperature used in the studies. Studies were individually reviewed for relevance and then categorized into the age of the subjects used, the type of arthritis subjects were diagnosed with, the number of aquatic exercise training performed each week, the length of the aquatic exercise training and the span of the experiment. Studies that were not restricted to subjects of one type of arthritis were independently classified. Experiments performed on subjects with a large range of age were independently classified. The frequency of studies performed on different forms of arthritis, age groups were counted. The number of studies with different frequency of aquatic exercise training a week, the length of the training and the total span the experiment took were also characteristics of interest.
DOI: 10.6084/m9.figshare.1616476
title: Systematic review data

description: The search for related articles was done through Web of Science with access provided by York University. Most of the diatom-related research consisted of the taxonomy, and the biochemistry part of it. To excluded such unrelated research, search terms used were ‘diatom*’, ‘carbon fixation*’, ‘diversity*’, and ‘marine’, all with AND search function. Excluding duplicate results, the database showed 29 search results regarding with the topics. 20 journal articles were selected for qualitative synthesis where remaining 8 articles were excluded. Most of the excluded articles were relatively out of date which were from late 1990s, and on different focus of study other than diatoms such as biochemistry. From the 21 articles that marked relevant, following dataset were extracted in order to observe the trends. (i) How many different diatom species they used for the experiments, (ii) levels of their study on diatoms, such as in species level, population level, community level, or ecosystem level, and (iii) methodology they used for the experiments. These dataset were individually reviewed and categorized for graphical analysis, and to support the objective for the review. To compare the frequency of the studies conducted based on these categories, bar-graph analysis and chi-squared tests were conducted. For chi-squared test the expected values are evenly distributed frequencies for all values, and were done using excel function command CHITEST.
DOI: 10.6084/m9.figshare.1616476.v1
title: Systematic review data

description: The search for related articles was done through Web of Science with access provided by York University. Most of the diatom-related research consisted of the taxonomy, and the biochemistry part of it. To excluded such unrelated research, search terms used were ‘diatom*’, ‘carbon fixation*’, ‘diversity*’, and ‘marine’, all with AND search function. Excluding duplicate results, the database showed 29 search results regarding with the topics. 20 journal articles were selected for qualitative synthesis where remaining 8 articles were excluded. Most of the excluded articles were relatively out of date which were from late 1990s, and on different focus of study other than diatoms such as biochemistry. From the 21 articles that marked relevant, following dataset were extracted in order to observe the trends. (i) How many different diatom species they used for the experiments, (ii) levels of their study on diatoms, such as in species level, population level, community level, or ecosystem level, and (iii) methodology they used for the experiments. These dataset were individually reviewed and categorized for graphical analysis, and to support the objective for the review. To compare the frequency of the studies conducted based on these categories, bar-graph analysis and chi-squared tests were conducted. For chi-squared test the expected values are evenly distributed frequencies for all values, and were done using excel function command CHITEST.
DOI: 10.6084/m9.figshare.1615928
title: Supplemental data for "The effects of subsampling gene trees on coalescent methods applied to ancient divergences"

description: Supplemental data for "The effects of subsampling gene trees on coalescent methods applied to ancient divergences," which will be published in the journal Molecular Phylogenetics and Evolution
DOI: 10.6084/m9.figshare.1615928.v1
title: Supplemental data for "The effects of subsampling gene trees on coalescent methods applied to ancient divergences"

description: Supplemental data for "The effects of subsampling gene trees on coalescent methods applied to ancient divergences," which will be published in the journal Molecular Phylogenetics and Evolution
DOI: 10.6084/m9.figshare.1615055
title: DoOP chordate v1.4 dataset, sequence data for 3000 nt promoter regions

description: 3000 nt promoter sequences for the DoOP database, chordate section, v1.4.
DOI: 10.6084/m9.figshare.1615057
title: DoOP chordate v1.1 dataset

description: Promoter sequences, alignments and conserved motifs for the DoOP database, chordate section, v1.1.
DOI: 10.6084/m9.figshare.1615056
title: DoOP chordate v1.0 dataset

description: Promoter sequences, alignments and conserved motifs for the DoOP database, chordate section, v1.0.
DOI: 10.6084/m9.figshare.1615054
title: DoOP chordate v1.4 dataset, alignment data for 3000 nt promoter regions

description: 3000 nt promoter alignments for the DoOP database, chordate section, v1.4.
DOI: 10.6084/m9.figshare.1615053
title: DoOP chordate v1.4 dataset, motif data for 3000 nt promoter regions

description: 3000 nt promoter motifs for the DoOP database, chordate section, v1.4.
DOI: 10.6084/m9.figshare.1615055.v1
title: DoOP chordate v1.4 dataset, sequence data for 3000 nt promoter regions

description: 3000 nt promoter sequences for the DoOP database, chordate section, v1.4.
DOI: 10.6084/m9.figshare.1615056.v1
title: DoOP chordate v1.0 dataset

description: Promoter sequences, alignments and conserved motifs for the DoOP database, chordate section, v1.0.
DOI: 10.6084/m9.figshare.1615054.v1
title: DoOP chordate v1.4 dataset, alignment data for 3000 nt promoter regions

description: 3000 nt promoter alignments for the DoOP database, chordate section, v1.4.
DOI: 10.6084/m9.figshare.1615049
title: DoOP chordate v1.4 dataset, sequence data for 500 nt promoter regions

description: 500 nt promoter sequences for the DoOP database, chordate section, v1.4.
DOI: 10.6084/m9.figshare.1615050
title: DoOP chordate v1.4 dataset, motif data for 1000 nt promoter regions

description: 1000 nt promoter motifs for the DoOP database, chordate section, v1.4.
DOI: 10.6084/m9.figshare.1615051
title: DoOP chordate v1.4 dataset, alignment data for 1000 nt promoter regions

description: 1000 nt promoter alignments for the DoOP database, chordate section, v1.4.
DOI: 10.6084/m9.figshare.1615053.v1
title: DoOP chordate v1.4 dataset, motif data for 3000 nt promoter regions

description: 3000 nt promoter motifs for the DoOP database, chordate section, v1.4.
DOI: 10.6084/m9.figshare.1615048
title: DoOP chordate v1.4 dataset, alignment data for 500 nt promoter regions

description: 500 nt promoter alignments for the DoOP database, chordate section, v1.4.