cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6dbwrp
title: Occurrence Download

description: A dataset containing 12302 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echinacea purpurea (L.) Moench"
 ]
}

 The dataset includes 12302 records from 256 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072531-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nw3hgu
title: Occurrence Download

description: A dataset containing 294 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wollemia nobilis W.G.Jones et al."
 ]
}

 The dataset includes 294 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072533-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14672119
title: Metagenomics of compost
DOI: 10.5281/zenodo.14672120
title: Metagenomics of compost
DOI: 10.15125/bath-00535
title: Coding of US Presidential discourse on protection

description: This dataset is based on NVivo coding of all clauses in US Presidential Papers (Public Papers of the Presidents of the United States 1989–2012 [Washington, D.C.: US Government Printing Office]) with the word "protect" in any of its forms. Clauses are coded for their referent objects (who is being protected). For those clauses that deal with the protection of global civilians (referent object is not US or allies, but people in other countries), coding is also done for the agent of protection and for the method of protection (protection by changing someone else's behaviour vs. protection by changing one's own behaviour).
description: The coding rules and theoretical connections can be found in the following publications:

1. Kivimäki, Timo. The Failure to Protect. The Path to and Consequences of Humanitarian Interventionism. (Cheltenham: Edward Elgar Publishing, 2019).

2. Kivimäki, Timo. “How Does Nationalist Selfishness Creep into Cosmopolitan Protection?” Global Responsibility to Protect, vol. 10, no. 1 (January 2019).
description: Stata files are in release 117 format, corresponding to Stata version 13.
description: Further relevant documentation may be found in the following resources.

   Kivimäki, T.,  2019.   The Failure to Protect.         Edward Elgar Publishing.  Available from: https://doi.org/10.4337/9781788111010.  

   Kivimäki, T.,  2019.   How Does Nationalist Selfishness Creep into Cosmopolitan Protection?    Global Responsibility to Protect, 11(1), 42-76.  Available from: https://doi.org/10.1163/1875984x-01101004.
DOI: 10.15125/bath-01466
title: Peacification. Data for the elaboration of the social realities peace and security framing constitutes in conflicts.

description: This data reveals the association between peace and security framing in US presidential speech on the one hand, and the US impact on fatalities in US conflicts on the other. Specifically, it compares the frequency of certain key terms and references in presidential speech from the period 1993-2014, as they were coded from the text in the “Public Papers of the Presidents of the United States”, with statistics on fatalities of organised violence during the same period, drawn from Uppsala University's UCDP Georeferenced Event Dataset.
description: The data is based on NVivo content analysis of US Presidential Papers from 1993 until the end of 2013, for the period of humanitarian interventionism. The quantified textual data is then moved to StataB 18 package, and merged with data from Uppsala University's UCDP Georeferenced Event Dataset (GED) Global version 24.1:

- Davies, Shawn, Garoun Engström, Therese Pettersson & Magnus Öberg (2024). Organized violence 1989-2023, and the prevalence of organized crime groups. Journal of Peace Research 61(4).

- Sundberg, Ralph and Erik Melander (2013) Introducing the UCDP Georeferenced Event Dataset. Journal of Peace Research 50(4).

Some of the word frequency calculations are from the following dataset:

- Kivimäki, T., 2019. Coding of US Presidential discourse on protection. Bath: University of Bath Research Data Archive.
description: Textual content analysis is created by using NVivo R 1.6 package while the preparation of conflict data has been created by using StataB 18 package.
description: The data consists of coding of text as explained in the codebook, and monthly observations of conflict data as explained in the codebook and in the associated article.
description: Further relevant documentation may be found in the following resources.

   Davies, S., Engström, G., Pettersson, T., and Öberg, M.,  2024.   Organized violence 1989–2023, and the prevalence of organized crime groups.    Journal of Peace Research, 61(4), 673-693.  Available from: https://doi.org/10.1177/00223433241262912.  

   Sundberg, R., and Melander, E.,  2013.   Introducing the UCDP Georeferenced Event Dataset.    Journal of Peace Research, 50(4), 523-532.  Available from: https://doi.org/10.1177/0022343313484347.  

   Kivimäki, T.,  2019.   Coding of US Presidential discourse on protection.       Version 1.  Bath: University of Bath Research Data Archive.  Available from: https://doi.org/10.15125/BATH-00535.  

   Kivimäki, T.,  2025.   Is Securitisation a Natural and Useful Response to Existential Threats? Introducing the Idea of Peacification.    Social Sciences, 14(1), 43.  Available from: https://doi.org/10.3390/socsci14010043.
DOI: 10.6084/m9.figshare.28203137
title: Genome-wide association analysis provides insights into the genomics and extracellular expression of <i>Staphylococcus aureus</i> proteases

description: Extracellular proteases are a class of <i>Staphylococcus aureus</i> virulence factors that thwart the immune system, promote nutrient acquisition, and shape the activity of virulence determinants. <i>S. aureus</i> displays considerable phenotypic and genotypic variation within clinical important lineages, giving rise to diverse infection types. Therefore, understanding how protease expression influences pathogenicity requires consideration of the underlying genes and their regulation in natural populations. In this study we determined the protease activity of 134 USA300 S. aureus isolates from clinical infections and asymptomatic carriage. In high-throughput casein hydrolysis assays, bloodstream infection isolates had significantly lower protease activity than carriage isolates. To identify the genetic variation underlying this variation in protease expression, we employed a <i>k</i>-mer-based genome wide association study, identifying 68 genes with polymorphisms significantly associated with proteolytic activity. Population-scale genomic variation was compared with strains from a sequenced- defined transposon library, validating the function of 27 loci that were significantly associated with decreased protease expression. Associated genes included known protease-regulating genes, including<i> agrA</i>, but most were novel. These included genes linked to central metabolism, permeases, transporters and membrane proteins. Characterizing the complexity of protease regulation and expression will enhance our fundamental understanding of <i>S. aureus</i> virulence which may result in improved treatment options for problematic clinical <i>S. aureus</i> infections.
DOI: 10.6084/m9.figshare.28203137.v3
title: Genome-wide association analysis provides insights into the genomics and extracellular expression of <i>Staphylococcus aureus</i> proteases

description: Extracellular proteases are a class of <i>Staphylococcus aureus</i> virulence factors that thwart the immune system, promote nutrient acquisition, and shape the activity of virulence determinants. <i>S. aureus</i> displays considerable phenotypic and genotypic variation within clinical important lineages, giving rise to diverse infection types. Therefore, understanding how protease expression influences pathogenicity requires consideration of the underlying genes and their regulation in natural populations. In this study we determined the protease activity of 134 USA300 S. aureus isolates from clinical infections and asymptomatic carriage. In high-throughput casein hydrolysis assays, bloodstream infection isolates had significantly lower protease activity than carriage isolates. To identify the genetic variation underlying this variation in protease expression, we employed a <i>k</i>-mer-based genome wide association study, identifying 68 genes with polymorphisms significantly associated with proteolytic activity. Population-scale genomic variation was compared with strains from a sequenced- defined transposon library, validating the function of 27 loci that were significantly associated with decreased protease expression. Associated genes included known protease-regulating genes, including<i> agrA</i>, but most were novel. These included genes linked to central metabolism, permeases, transporters and membrane proteins. Characterizing the complexity of protease regulation and expression will enhance our fundamental understanding of <i>S. aureus</i> virulence which may result in improved treatment options for problematic clinical <i>S. aureus</i> infections.
DOI: 10.6084/m9.figshare.28203137.v2
title: Genome-wide association analysis provides insights into the genomics and extracellular expression of <i>Staphylococcus aureus</i> proteases

description: Extracellular proteases are a class of <i>Staphylococcus aureus</i> virulence factors that thwart the immune system, promote nutrient acquisition, and shape the activity of virulence determinants. <i>S. aureus</i> displays considerable phenotypic and genotypic variation within clinical important lineages, giving rise to diverse infection types. Therefore, understanding how protease expression influences pathogenicity requires consideration of the underlying genes and their regulation in natural populations. In this study we determined the protease activity of 134 USA300 S. aureus isolates from clinical infections and asymptomatic carriage. In high-throughput casein hydrolysis assays, bloodstream infection isolates had significantly lower protease activity than carriage isolates. To identify the genetic variation underlying this variation in protease expression, we employed a <i>k</i>-mer-based genome wide association study, identifying 68 genes with polymorphisms significantly associated with proteolytic activity. Population-scale genomic variation was compared with strains from a sequenced- defined transposon library, validating the function of 27 loci that were significantly associated with decreased protease expression. Associated genes included known protease-regulating genes, including<i> agrA</i>, but most were novel. These included genes linked to central metabolism, permeases, transporters and membrane proteins. Characterizing the complexity of protease regulation and expression will enhance our fundamental understanding of <i>S. aureus</i> virulence which may result in improved treatment options for problematic clinical <i>S. aureus</i> infections.
DOI: 10.15468/dl.efqsp9
title: Occurrence Download

description: A dataset containing 2746 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spongonema tomentosum (Huds.) Kütz."
 ]
}

 The dataset includes 2746 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072534-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gwmh4
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fundulus lima Vaillant, 1894"
 ]
}

 The dataset includes 151 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0314076-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rnct5s
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Adesmia longiseta DC."
 ]
}

 The dataset includes 29 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001693-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvmk42
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sphinx pinastri Linnaeus, 1758",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Poland",
 "Country is Poland"
 ]
 }
 ]
}

 The dataset includes 224 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0385994-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jv7937
title: Occurrence Download

description: A dataset containing 481083 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Month is December",
 {
 "or" : [
 "TaxonKey is Animalia",
 "TaxonKey is Plantae",
 "TaxonKey is Chromista"
 ]
 },
 "Year 2021-2022"
 ]
}

 The dataset includes 481083 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0183883-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g295hc
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taraxacum cyrtolobum G.E.Haglund"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006092-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2e94pa
title: Occurrence Download

description: A dataset containing 391 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rasbora sumatrana (Bleeker, 1852)"
 ]
}

 The dataset includes 391 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0314083-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s7sed4
title: Occurrence Download

description: A dataset containing 3312 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Dataset of the plant-Buprestidae (Coleoptera) interactions from Mexico"
 ]
}

 The dataset includes 3312 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0121814-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.adydhc
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Greece",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Epilobium montanum L."
 ]
}

 The dataset includes 52 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136299-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fbb8x3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apolychrosis candidus Pogue, 1986",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Poland",
 "Country is Poland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0385995-210914110416597/datasets/export for details.
DOI: 10.15468/dl.fe97tb
title: Occurrence Download

description: A dataset containing 9230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campaea perlata (Guenée)",
 {
 "or" : [
 "Country is United States of America",
 "Country is United States",
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 9230 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130293-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.152804
title: TÔD_pv_2004_02322

description: Référence : pv_2004_02322<br />Site : Tôd<br />Secteur : Temple de Montou<br />Type : photographie<br />
DOI: 10.15468/dl.49b6z7
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Rhododendron maoerense D.Fang & Q.Z.Li",
 "TaxonKey is Rhododendron maoerense W.P.Fang & G.Z.Li"
 ]
 }
 ]
}

 The dataset includes 33 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0365097-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.152805
title: TÔD_pv_2004_02323

description: Référence : pv_2004_02323<br />Site : Tôd<br />Secteur : Temple de Montou<br />Type : photographie<br />
DOI: 10.15468/dl.acuger
title: Occurrence Download

description: A dataset containing 10821 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mentha arvensis L."
 ]
}

 The dataset includes 10821 records from 312 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136289-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxwqtb
title: Occurrence Download

description: A dataset containing 13150 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Fossil",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 "Country is Colombia",
 "HasCoordinate is true",
 "TaxonKey is Catharus ustulatus (Nuttall, 1840)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13150 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001144-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.152806
title: TÔD_pv_2004_02324

description: Référence : pv_2004_02324<br />Site : Tôd<br />Secteur : Temple de Montou<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.152807
title: TÔD_pv_2004_02325

description: Référence : pv_2004_02325<br />Site : Tôd<br />Secteur : Temple de Montou<br />Type : photographie<br />
DOI: 10.15468/dl.ursjbr
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agathidium kyotoense Angelini & De Marzo, 1988",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0310593-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wum8mb
title: Occurrence Download

description: A dataset containing 989 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum candidum Lindl."
 ]
}

 The dataset includes 989 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136324-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.152808
title: TÔD_pv_2004_02326

description: Référence : pv_2004_02326<br />Site : Tôd<br />Secteur : Temple de Montou<br />Type : photographie<br />
DOI: 10.15468/dl.qj3km9
title: Occurrence Download

description: A dataset containing 3296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-73.8162590999999964 40.7499345000000019, -73.8162590999999964 40.7518947200000028, -73.8162590999999964 40.7528748300000032, -73.8162590999999964 40.7543895499999991, -73.8162590999999964 40.7553696599999995, -73.8162590999999964 40.7567061700000011, -73.8162590999999964 40.7587554899999986, -73.8162590999999964 40.7597355999999991, -73.8135809099999989 40.7597355999999991, -73.8118847199999948 40.7597355999999991, -73.8096529000000032 40.7597355999999991, -73.8073318000000000 40.7597355999999991, -73.8073318000000000 40.7582208800000032, -73.8073318000000000 40.7571516699999989, -73.8073318000000000 40.7558151599999974, -73.8073318000000000 40.7548350499999970, -73.8073318000000000 40.7533203300000011, -73.8073318000000000 40.7520729200000034, -73.8073318000000000 40.7499345000000019, -73.8092065299999973 40.7499345000000019, -73.8114383599999968 40.7499345000000019, -73.8140272699999969 40.7499345000000019, -73.8162590999999964 40.7499345000000019))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 3296 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095653-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.152809
title: TÔD_pv_2004_02327

description: Référence : pv_2004_02327<br />Site : Tôd<br />Secteur : Temple de Montou<br />Type : photographie<br />
DOI: 10.34816/ifao.archives.152810
title: TÔD_pv_2004_02328

description: Référence : pv_2004_02328<br />Site : Tôd<br />Secteur : Temple de Montou<br />Type : photographie<br />