cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1074326.10fu
title: SH1074326.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1074327.10fu
title: SH1074327.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1074331.10fu
title: SH1074331.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1074332.10fu
title: SH1074332.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1074334.10fu
title: SH1074334.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.9dbtdq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreolalax pingii (Liu, 1943)",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002330-250227182400228/datasets/export for details.
DOI: 10.15468/dl.8h2txu
title: Occurrence Download

description: A dataset containing 226832 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Buddleja davidii Franch.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 226832 records from 1442 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002322-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pu7p79
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pethia conchonius (Hamilton, 1822))",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002354-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqys7m
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreolalax popei (Liu, 1947)",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002331-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93c2ds
title: Occurrence Download

description: A dataset containing 7985 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Salix babylonica L.)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7985 records from 337 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002332-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74skge
title: Occurrence Download

description: A dataset containing 350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Ambystoma amblycephalum"
 ]
}

 The dataset includes 350 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059106-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17274457
title: Choices that matter: the impact of substitution models on machine learning-based species delimitation inference

description: REPOSITORY STILL UNDER CONSTRUCTION

Here we provide the datasets, input and output files used and/or produced during the realization of the work “Choices that matter: the impact of substitution models on machine learning-based species delimitation inference”. In this study, we evaluated the effect of substitution-model heterogeneity on ML-based inference of species limits and demographic models

The READ-ME.txt file contains a brief description of each of the files in the folders provided here.

Authors: Matheus M. A. Salles*, Fabricius M. C. B. Domingos*Author for Correspondence: Matheus Salles, Zoology Graduate Program, Federal University of Paraná, Brazil, matheusmaciel.salles@gmail.com
DOI: 10.15468/dl.z928ky
title: Occurrence Download

description: A dataset containing 223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enterolobium contortisiliquum",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 223 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059107-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/1fxr-x451
title: Parkes observations for project P1328 semester 2024OCTS_08

description: Fast radio bursts are peculiar micro-millisecond duration transients, which have been seen to be extragalactic in origin. Since their discovery, a dichotomy has emerged in their population. Some FRBs have been seen to be repeating, while others have not been seen to be repeating. The repeating FRBs, such as FRB 20180301A, provide an unparalleled window into their circumburst environment due to their repeating nature, which can be used to constrain possible progenitor models and test underlying emission mechanisms. Additionally, FRB 20180301A has been seen to have interesting polarisation properties, such as a switch in the sign of RM, indicating a reversal in the magnetic field and a marked reduction in the linear polarisation fraction towards lower frequencies (depolarisation). The previous Parkes/Murriyang source follow-up has also revealed a temporal evolution in the dispersion measure (DM) of the source and tentative evidence for correlation in the DM and rotation measure (RM). The ultra-wideband low (UWL) receiver on Parkes/Murriyang is ideally suited to explore the wideband spectro-temporal and polarimetric behaviour of the source. We propose regular monitoring of FRB 20180301A using UWL to model the magnetic field evolution, study its circumburst media using depolarisation behaviour, and constrain any correlation of DM and RM.
DOI: 10.15468/dl.q92djw
title: Occurrence Download

description: A dataset containing 2382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Raja brachyura Lafont, 1871",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2382 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016482-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.un4erc
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Raja kwangtungensis Chu, 1960",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016483-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r38frr
title: Occurrence Download

description: A dataset containing 366229 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Trifolium dubium Sibth."
 ]
}

 The dataset includes 366229 records from 2458 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016367-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.6377460
title: Precipitation objects under the current and future climate: WRF 6-km hydroclimate simulation of the western US

description: This folder includes the precipitation objects that are used in the following manuscript:

Chen et al., Sharpening of Cold Season Storms over the Western US.

It is generated using WRF V3.8 at PNNL. A historical simulation ("NARR") is done for 1981-2010, and five future simulations ("CanESM2", "CESM1-CAM5", "GFDL-ESM2M", "HadGEM2-ES", "MPI-ESM-MR") are done for 2041-2070 using the Pseudo Global Warming (PGW) approach. For the WRF model configuration and the simulation details, please refer to the abovementioned manuscript and Chen et al. (2018).

This is the preliminary version of the dataset that contains the precipitation object features as analyzed in the manuscript. More data (including the WRF raw precipitation output) and the finalized scripts will be included here before the manuscript is published.

 

Reference:

Chen, X., L. R. Ruby, Y. Gao, Y. Liu, M. Wigmosta, and M. Richmond (2018), Predictability of Extreme Precipitation in Western U.S. Watersheds Based on Atmospheric River Occurrence, Intensity, and Duration, Geophys. Res. Lett. doi: 10.1029/2018GL079831

Chen, X., L. R. Ruby, Y. Gao, Y. Liu, and M. Wigmosta (2023), Sharpening of Cold Season Storms over the Western US, Nat. Clim. Change. doi: 10.1038/s41558-022-01578-0
DOI: 10.5281/zenodo.6378027
title: Precipitation objects under the current and future climate: WRF 6-km hydroclimate simulation of the western US

description: This folder includes the precipitation objects that are used in the following manuscript:

Chen et al., Sharpening of Cold Season Storms over the Western US.

It is generated using WRF V3.8 at PNNL. A historical simulation ("NARR") is done for 1981-2010, and five future simulations ("CanESM2", "CESM1-CAM5", "GFDL-ESM2M", "HadGEM2-ES", "MPI-ESM-MR") are done for 2041-2070 using the Pseudo Global Warming (PGW) approach. For the WRF model configuration and the simulation details, please refer to the abovementioned manuscript and Chen et al. (2018).

This is the preliminary version of the dataset that contains the precipitation object features as analyzed in the manuscript. More data (including the WRF raw precipitation output) and the finalized scripts will be included here before the manuscript is published.

 

Reference:

Chen, X., L. R. Ruby, Y. Gao, Y. Liu, M. Wigmosta, and M. Richmond (2018), Predictability of Extreme Precipitation in Western U.S. Watersheds Based on Atmospheric River Occurrence, Intensity, and Duration, Geophys. Res. Lett. doi: 10.1029/2018GL079831

Chen, X., L. R. Ruby, Y. Gao, Y. Liu, and M. Wigmosta (2023), Sharpening of Cold Season Storms over the Western US, Nat. Clim. Change. doi: 10.1038/s41558-022-01578-0
DOI: 10.15468/dl.uvxqns
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-71.40009 -33.0338,-71.39435 -33.0338,-71.39435 -33.02816,-71.40009 -33.02816,-71.40009 -33.0338))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 20 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074962-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etmx3v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erysimum cheiri (L.) Crantz",
 "Country is Albania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074963-250525065834625/datasets/export for details.
DOI: 10.15468/dl.yawayw
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erysimum cheiri (L.) Crantz",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 47 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074965-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.94xzek
title: Occurrence Download

description: A dataset containing 1922 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erysimum cheiri (L.) Crantz",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1922 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074964-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gm9qnn
title: Occurrence Download

description: A dataset containing 1534 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Portugal, Spain)",
 "TaxonKey is Plecotus auritus (Linnaeus, 1758)"
 ]
}

 The dataset includes 1534 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074966-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15764129
title: Green Article

description: The Final SPSS DataSet Related to the Research article with my own Correspondence.
DOI: 10.5281/zenodo.15764130
title: Green Article

description: The Final SPSS DataSet Related to the Research article with my own Correspondence.
DOI: 10.15468/dl.zf2ujg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella (Valenciennes, 1844)",
 "Country is Algeria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074968-250525065834625/datasets/export for details.
DOI: 10.15468/dl.w2kawn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella (Valenciennes, 1844)",
 "Country is Cambodia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074970-250525065834625/datasets/export for details.
DOI: 10.15468/dl.uxdwdn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella (Valenciennes, 1844)",
 "Country is Bolivia (Plurinational State of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074969-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15764172
title: branta_sandvicensis_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.15764173
title: branta_sandvicensis_zanfona_1.fasta.gz
DOI: 10.15468/dl.rajcmf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella (Valenciennes, 1844)",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074974-250525065834625/datasets/export for details.
DOI: 10.15468/dl.c3unbg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella (Valenciennes, 1844)",
 "Country is Guyana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074975-250525065834625/datasets/export for details.
DOI: 10.15468/dl.7mw8qr
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella (Valenciennes, 1844)",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074976-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12313862
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.6084/m9.figshare.29344979
title: ELISA nanostring and bacterial.xlsx

description: Bulk RNA data from ileum mucosa<br>Bacterial data from intestinal lumen<br>Intraluminal antimicrobial peptides and inflammatory markers (identified by ELISA)
DOI: 10.6084/m9.figshare.29344979.v1
title: ELISA nanostring and bacterial.xlsx

description: Bulk RNA data from ileum mucosa<br>Bacterial data from intestinal lumen<br>Intraluminal antimicrobial peptides and inflammatory markers (identified by ELISA)
DOI: 10.6084/m9.figshare.29344979.v2
title: ELISA nanostring and bacterial.xlsx

description: Bulk RNA data from ileum mucosa<br>Bacterial data from intestinal lumen<br>Intraluminal antimicrobial peptides and inflammatory markers (identified by ELISA)
DOI: 10.15468/dl.mcnxb8
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella (Valenciennes, 1844)",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074979-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cc8hvc
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella (Valenciennes, 1844)",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 24 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074980-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.