cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tdusnm
title: Occurrence Download

description: A dataset containing 42236 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Taxus baccata L."
 ]
}

 The dataset includes 42236 records from 148 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001602-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28443374
title: 3D-PanoPACT_Data_Code

description: Supporting source data and codes for Wang et al. "Cross-regional real-time visualization of systemic physiology and dynamics with 3D panoramic photoacoustic computed tomography (3D-PanoPACT)"
DOI: 10.6084/m9.figshare.28443374.v2
title: 3D-PanoPACT_Data_Code

description: Supporting source data and codes for Wang et al. "Cross-regional real-time visualization of systemic physiology and dynamics with 3D panoramic photoacoustic computed tomography (3D-PanoPACT)"
DOI: 10.5281/zenodo.14892641
title: JINOYATLARNI BARVAQT OLDINI OLISHDA ILG'OR XORIJIY TAJRIBALARNI AMALIYOTGA JORIY ETISHNI TAKOMILLASHTIRISH

description: Ushbu maqolada jinoyatlarni barvaqt oldini olish hamda ushbu jarayonda ilg’or xorijiy tajribalardan foydalanish chora tadbirlari haqida so’z boradi.
DOI: 10.5281/zenodo.14892642
title: JINOYATLARNI BARVAQT OLDINI OLISHDA ILG'OR XORIJIY TAJRIBALARNI AMALIYOTGA JORIY ETISHNI TAKOMILLASHTIRISH

description: Ushbu maqolada jinoyatlarni barvaqt oldini olish hamda ushbu jarayonda ilg’or xorijiy tajribalardan foydalanish chora tadbirlari haqida so’z boradi.
DOI: 10.5281/zenodo.14892806
title: THE HOLY QURAN: SEMANTIC ESSENCE AND THE INTERPRETATION

description: In the current article, researches proposed clarification of semantic essence and the interpretation of the Holy Quran on the examples of its English alternatives comprising differences between translation and taweel (allegorical interpretation) and tafseer (commentary/exegesis) which are used to express the meanings of the Holy Qur'an in different languages. Furthermore, the researchers also provide categorical classification of English translations of the Holy Qur'an based on their linguistic and theological characteristics.
DOI: 10.5281/zenodo.14892807
title: THE HOLY QURAN: SEMANTIC ESSENCE AND THE INTERPRETATION

description: In the current article, researches proposed clarification of semantic essence and the interpretation of the Holy Quran on the examples of its English alternatives comprising differences between translation and taweel (allegorical interpretation) and tafseer (commentary/exegesis) which are used to express the meanings of the Holy Qur'an in different languages. Furthermore, the researchers also provide categorical classification of English translations of the Holy Qur'an based on their linguistic and theological characteristics.
DOI: 10.5281/zenodo.14892820
title: CYBER-SECURITY TACTICS IN MITIGATING CYBERCRIMES: A REVIEW AND PROPOSAL

description: Cyber-Security Tactics in Mitigating Cyber-Crimes: A Review and Proposal

 



Authors


Adeniyi Phillips, Ibraheem Ojelade, Esther Taiwo, Callistus Obunadike and Kunle Oloyede, Austin Peay State University, USA

 



Abstract

This article underscores the urgent need for a global response to cyber threats, discusses the risks associated with increasing reliance on technology, and sets the stage for a review focused on understanding and mitigating cybercrimes. In summary, the passage discusses the internet's impact on national development and the growing problem of cybercrime. It calls for a deeper understanding of the characteristics and motivations of cybercriminals and highlights several questions that need to be addressed to effectively combat cybercrime and its detrimental effects on society. The classification of cybercrime is summarized into five categories: Cybercrimes against Persons (including cyber pornography, cyber stalking, financial cybercrimes, phishing, and vishing), Cybercrimes against Property (involving intellectual property violations, data theft, and "Man in the Middle" attacks), Cybercrimes against Government, Denial of Service (DOS) Attacks, and Other Cybercrimes (comprising data diddling, salami attacks, email bombing, email spoofing, logic bombs, internet time theft, and mobile and wireless technology-related cybercrimes). This classification helps understand the diverse nature of cybercrimes, their attack methods, and tools used in their commission. This article discusses cybercrimes against government and the importance of cybersecurity. It highlights key cybercrimes against governments, including cyberterrorism and hacking/cracking activities. The text emphasizes the need for a cybersecurity culture and presents goals and prevention strategies to enhance cyber protection. It also mentions crime detection steps, tools, and defense methods to safeguard against cybercrimes. The passage emphasizes the importance of protecting electronic evidence and using software and hardware tools for digital forensic investigations. It also mentions various cybersecurity technologies and methods, such as network access control, honeypots, encryption, and intrusion detection systems, to prevent cyberattacks. Overall, the passage underscores the significance of cybersecurity in protecting critical information infrastructure and reducing cybercrime risks. Essentially, the need for comprehensive cybersecurity measures to protect against cybercrimes and the importance of detecting, preventing, and mitigating cyber threats against governments and critical information infrastructure.

Keywords

Cybercrimes, cyber-security, information, and communication technology (ICT), cyberspace, Cyber-Terrorists
DOI: 10.5281/zenodo.14892821
title: CYBER-SECURITY TACTICS IN MITIGATING CYBERCRIMES: A REVIEW AND PROPOSAL

description: Cyber-Security Tactics in Mitigating Cyber-Crimes: A Review and Proposal

 



Authors


Adeniyi Phillips, Ibraheem Ojelade, Esther Taiwo, Callistus Obunadike and Kunle Oloyede, Austin Peay State University, USA

 



Abstract

This article underscores the urgent need for a global response to cyber threats, discusses the risks associated with increasing reliance on technology, and sets the stage for a review focused on understanding and mitigating cybercrimes. In summary, the passage discusses the internet's impact on national development and the growing problem of cybercrime. It calls for a deeper understanding of the characteristics and motivations of cybercriminals and highlights several questions that need to be addressed to effectively combat cybercrime and its detrimental effects on society. The classification of cybercrime is summarized into five categories: Cybercrimes against Persons (including cyber pornography, cyber stalking, financial cybercrimes, phishing, and vishing), Cybercrimes against Property (involving intellectual property violations, data theft, and "Man in the Middle" attacks), Cybercrimes against Government, Denial of Service (DOS) Attacks, and Other Cybercrimes (comprising data diddling, salami attacks, email bombing, email spoofing, logic bombs, internet time theft, and mobile and wireless technology-related cybercrimes). This classification helps understand the diverse nature of cybercrimes, their attack methods, and tools used in their commission. This article discusses cybercrimes against government and the importance of cybersecurity. It highlights key cybercrimes against governments, including cyberterrorism and hacking/cracking activities. The text emphasizes the need for a cybersecurity culture and presents goals and prevention strategies to enhance cyber protection. It also mentions crime detection steps, tools, and defense methods to safeguard against cybercrimes. The passage emphasizes the importance of protecting electronic evidence and using software and hardware tools for digital forensic investigations. It also mentions various cybersecurity technologies and methods, such as network access control, honeypots, encryption, and intrusion detection systems, to prevent cyberattacks. Overall, the passage underscores the significance of cybersecurity in protecting critical information infrastructure and reducing cybercrime risks. Essentially, the need for comprehensive cybersecurity measures to protect against cybercrimes and the importance of detecting, preventing, and mitigating cyber threats against governments and critical information infrastructure.

Keywords

Cybercrimes, cyber-security, information, and communication technology (ICT), cyberspace, Cyber-Terrorists
DOI: 10.5281/zenodo.14888254
title: Amphibians data for correlative models
title: Presence data, correlation analysis and contribution percentage of variables

description: This dataset includes presence data, macroclimate variables data and their correlation analysis, and variable contribution percentage to correlative models. All this data was used in the development of the chapter 3 in the doctoral thesis called "Tolerancia y sensibilidad al calentamiento global de las especies de anuros de la región centro-oeste de Argentina: una aproximación fisiológica y mecanística."
DOI: 10.5281/zenodo.14888253
title: Amphibians data for correlative models

description: This dataset includes presence data, macroclimate variables data and their correlation analysis, and variable contribution percentage to correlative models. The data were used in the development of the chapter 4 of the doctoral thesis called "Tolerancia y sensibilidad al calentamiento global de las especies de anuros de la región centro-oeste de Argentina: una aproximación fisiológica y mecanística."
DOI: 10.5281/zenodo.14892514
title: Amphibians data for correlative models

description: This dataset includes presence data, macroclimate variables data and their correlation analysis, and variable contribution percentage to correlative models. The data were used in the development of the chapter 4 of the doctoral thesis called "Tolerancia y sensibilidad al calentamiento global de las especies de anuros de la región centro-oeste de Argentina: una aproximación fisiológica y mecanística."
DOI: 10.15468/dl.f7ew8c
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bassia scoparia (L.) A.J.Scott",
 "Country is Australia",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 70 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001607-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7118555
title: MUHAI Benchmark : Task 2 (Credibility of knowledge-based generated gossip stories)

description: Meaning and Understanding in Human-Centric AI (MUHAI) Benchmark
Task 2 (Credibility of knowledge-based generated gossip stories)


 


This dataset aims at investigating whether the use of Knowledge Graphs has an impact on the credibililty of automatically-generated stories.



The submission includes the following data:



	
Generated stories (.txt)
	
Story generation template 
	
A tsv file with entities and triples (to be used for generating stories)
	
Evaluation description : Questions and metrics submitted to the users



The "gossip stories" are generated with the T5 languge model fine-tuned on the WebNLG challenge. The model takes the triples (file 3) as input and generates one sentence each. A link prediction algorithm based on Jaccard's similarity learns the likelihood of two entities to be related (3). Then, the narrative continues with automatically generated celebrity background descriptions.


The credibility of the story is evaluated using a questionnaire based on Gaziano et. al. The questionnaire was filled in by the test subjects after reading each generated article. One for a KG-generated text where links were predicted using the link prediction and one for text that was generated using triples of random entities (celebrities). 


Full code available at : https://github.com/kmitd/muhai-credibility-KR
DOI: 10.5281/zenodo.7118556
title: MUHAI Benchmark : Task 2 (Credibility of knowledge-based generated gossip stories)

description: Meaning and Understanding in Human-Centric AI (MUHAI) Benchmark
Task 2 (Credibility of knowledge-based generated gossip stories)


 


This dataset aims at investigating whether the use of Knowledge Graphs has an impact on the credibililty of automatically-generated stories.



The submission includes the following data:



	
Generated stories (.txt)
	
Story generation template 
	
A tsv file with entities and triples (to be used for generating stories)
	
Evaluation description : Questions and metrics submitted to the users



The "gossip stories" are generated with the T5 languge model fine-tuned on the WebNLG challenge. The model takes the triples (file 3) as input and generates one sentence each. A link prediction algorithm based on Jaccard's similarity learns the likelihood of two entities to be related (3). Then, the narrative continues with automatically generated celebrity background descriptions.


The credibility of the story is evaluated using a questionnaire based on Gaziano et. al. The questionnaire was filled in by the test subjects after reading each generated article. One for a KG-generated text where links were predicted using the link prediction and one for text that was generated using triples of random entities (celebrities). 


Full code available at : https://github.com/kmitd/muhai-credibility-KR
DOI: 10.5281/zenodo.14892824
title: ABDULLA QODIRIY HAYOTI: MILLIY UYG'ONISH YO'LIDAGI FIDOYILIK

description: Abdulla Qodiriy o‘zbek milliy adabiyoti va ma’naviy uyg‘onish harakatining asoschilaridan biri sifatida nafaqat yozuvchi, balki o‘z xalqining ravnaqi yo‘lida fidokorona xizmat qilgan ziyoli sifatida ham tarixda o‘chmas iz qoldirgan. Uning hayoti o‘zbek xalqining mustamlaka asoratidan chiqishga bo‘lgan intilishi, milliy o‘zlik va adabiy erkinlik yo‘lidagi kurash bilan chambarchas bog‘liq. Ushbu maqolada Qodiriyning bolaligi, ta’lim olgan davri, ijodiy faoliyati, jadidchilik harakatidagi ishtiroki va qatag‘on qurboni sifatidagi og‘ir taqdiri keng yoritiladi.

Qodiriy hayoti millatning uyg‘onish davri bilan uzviy bog‘liq bo‘lib, u jadidlar safida turib xalqni ilmlilik, taraqqiyot va milliy uyg‘onishga chorlagan. Uning asarlari milliy ruhni uyg‘otish, tarixiy xotirani tiklash va jamiyatni adolatga yetaklash g‘oyalariga asoslangan. “O‘tkan kunlar” va “Mehrobdan chayon” romanlari nafaqat badiiy yuksaklik, balki tarixiy saboqlari bilan ham muhim ahamiyat kasb etadi. Ushbu maqolada yozuvchining ijodiy merosi, uning asarlarida milliy o‘zlik va ijtimoiy haqiqatning aks etishi, shuningdek, uning qatag‘on davridagi fojiali qismati tahlil qilinadi.

Qodiriy hayoti va ijodi yoshlar tarbiyasida muhim o‘rin tutib, ularga milliy o‘zlikni anglash, vatanparvarlik va adolat yo‘lida kurashish kabi tamoyillarni singdiradi. Uning shaxsiy hayoti va ijodi fidoyilik, xalq manfaati yo‘lida o‘zini qurbon qilish namunasi bo‘lib, bugungi kunda ham dolzarb bo‘lib qolmoqda. Ushbu maqola orqali Qodiriyning milliy uyg‘onish yo‘lidagi xizmatlari va uning zamonaviy yosh avlod uchun ahamiyati chuqur tahlil qilinadi.
DOI: 10.5281/zenodo.14892825
title: ABDULLA QODIRIY HAYOTI: MILLIY UYG'ONISH YO'LIDAGI FIDOYILIK

description: Abdulla Qodiriy o‘zbek milliy adabiyoti va ma’naviy uyg‘onish harakatining asoschilaridan biri sifatida nafaqat yozuvchi, balki o‘z xalqining ravnaqi yo‘lida fidokorona xizmat qilgan ziyoli sifatida ham tarixda o‘chmas iz qoldirgan. Uning hayoti o‘zbek xalqining mustamlaka asoratidan chiqishga bo‘lgan intilishi, milliy o‘zlik va adabiy erkinlik yo‘lidagi kurash bilan chambarchas bog‘liq. Ushbu maqolada Qodiriyning bolaligi, ta’lim olgan davri, ijodiy faoliyati, jadidchilik harakatidagi ishtiroki va qatag‘on qurboni sifatidagi og‘ir taqdiri keng yoritiladi.

Qodiriy hayoti millatning uyg‘onish davri bilan uzviy bog‘liq bo‘lib, u jadidlar safida turib xalqni ilmlilik, taraqqiyot va milliy uyg‘onishga chorlagan. Uning asarlari milliy ruhni uyg‘otish, tarixiy xotirani tiklash va jamiyatni adolatga yetaklash g‘oyalariga asoslangan. “O‘tkan kunlar” va “Mehrobdan chayon” romanlari nafaqat badiiy yuksaklik, balki tarixiy saboqlari bilan ham muhim ahamiyat kasb etadi. Ushbu maqolada yozuvchining ijodiy merosi, uning asarlarida milliy o‘zlik va ijtimoiy haqiqatning aks etishi, shuningdek, uning qatag‘on davridagi fojiali qismati tahlil qilinadi.

Qodiriy hayoti va ijodi yoshlar tarbiyasida muhim o‘rin tutib, ularga milliy o‘zlikni anglash, vatanparvarlik va adolat yo‘lida kurashish kabi tamoyillarni singdiradi. Uning shaxsiy hayoti va ijodi fidoyilik, xalq manfaati yo‘lida o‘zini qurbon qilish namunasi bo‘lib, bugungi kunda ham dolzarb bo‘lib qolmoqda. Ushbu maqola orqali Qodiriyning milliy uyg‘onish yo‘lidagi xizmatlari va uning zamonaviy yosh avlod uchun ahamiyati chuqur tahlil qilinadi.
DOI: 10.25921/rk8h-t126
title: National Coral Reef Monitoring Program: Calcification rates of crustose coralline algae derived from calcification accretion units (CAUs) deployed in the Florida Reef Tract

description: The calcification rate data described here are from in-house developed calcification accretion units (CAUs) deployed by scuba divers in the Florida Reef Tract, in accordance with protocols developed by Price et al. (2012), and as a part of NOAA's ongoing National Coral Reef Monitoring Program (NCRMP). 

CAUs allow for recruitment and colonization of Crustose Coralline Algae and hard corals. By measuring the change in weight of the CAUs, the reef carbonate accretion rate can be calculated for that time period. Monitoring net accretion over successive deployments allows for the detection of changes in calcification rates over time.

This study provides information about spatial patterns of algal calcification and accretion rates and serves as a basis for detecting changes associated with changing seawater chemistry due to ocean acidification. These data can also be used in comparative analyses across natural gradients, thereby assisting efforts to determine whether key reef-building taxa can acclimatize to changing oceanographic environments. These data will have immediate, direct impacts on predictions of reef resilience in a higher carbon dioxide (CO2) world and on the design of reef management strategies.
DOI: 10.25921/0g6h-a882
title: National Coral Reef Monitoring Program: Calcification rates of crustose coralline algae derived from calcification accretion units (CAUs) deployed in the U.S. Virgin Islands

description: The calcification rate data described here are from in-house developed calcification accretion units (CAUs) deployed by scuba divers in the United States Virgin Islands, in accordance with protocols developed by Price et al. (2012), and as a part of NOAA's ongoing National Coral Reef Monitoring Program (NCRMP). 

CAUs allow for recruitment and colonization of Crustose Coralline Algae and hard corals. By measuring the change in weight of the CAUs, the reef carbonate accretion rate can be calculated for that time period. Monitoring net accretion over successive deployments allows for the detection of changes in calcification rates over time.

This study provides information about spatial patterns of algal calcification and accretion rates and serves as a basis for detecting changes associated with changing seawater chemistry due to ocean acidification. These data can also be used in comparative analyses across natural gradients, thereby assisting efforts to determine whether key reef-building taxa can acclimatize to changing oceanographic environments. These data will have immediate, direct impacts on predictions of reef resilience in a higher carbon dioxide (CO2) world and on the design of reef management strategies.
DOI: 10.5281/zenodo.10470557
title: Telomere-to-Telomere assembly and annotation of PN40024

description:     PN40024, a highly homozygous Pinot Noir inbred line, was used for T2T genome assembly. In total, we generated 39.12Gb (~65X coverage) HiFi reads by the PacBio platform. The preliminary assembly were conducted using Hifiasm on HiFi reads, and Mumer was used to order and orient the contig-level assemblies using the PN40024.v3 genome as the reference, forming 169 contigs representing 19 chromosomes.

     The PN_T2T genome size (494.87M) is longer than that of 12X.v0 (426.18M). Due to the accuracy of HiFi long reads, the N50 length PN_T2T of (26.89 Mb) is 260 times higher than PN_v3 (~102Kb). For all 9423 gaps in 12X.v0 assembly, PN_T2T assembly is the gap-free grape genome.To validate the quality of our assembly, K-mer and BUSCO were conducted. We used K-mer to evaluate genomic heterozygosity, estimated 99.8%. BUSCO to evaluate genomic completeness, about 98.5% of the core conserved plant genes were found complete in the genome assembly.

The PN40024.T2T genome assembly: PN40024.T2T.fa

The PN40024.T2T gene annotation: PN40024.gff3

The PN40024.T2T TE annotation: PN40024.TE.gff

The PN40024.T2T centromere annotation: PN40024.trf.gff3

The PN40024.T2T protein sequence: PN40024.protein.fa

The PN40024.T2T cds sequence: PN40024.cds.fa

Comparison of gene annotation among PN_T2T and 12X.v0, 12X.v2, PN40024.v4, PN40024.v4.1: correlation.list
DOI: 10.5281/zenodo.10969867
title: The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding

description: PN40024, a highly homozygous inbred line originating from ‘Helfensteiner’, was used for T2T genome assembly. In total, 21 Gb (21 024 461 524 bp, ∼42× coverage) HiFi reads were generated by the PacBio platform. For the preliminary assembly, hifiasm was used to assemble the HiFi reads. We then used MUMmer and the 12X.v0 genome version (V. vinifera genome assembly 12X.v0 to order the 38 contigs into 19 chromosomes.

     The PN_T2T genome size was finally generated (494.87 Mb), being 69 Mb longer than 12X.v0  using the same statistical method. The k-mer metric was used to evaluate genomic homozygosity, estimated at 99.8%. The BUSCO for this genome is up to 98.5%.

The PN40024.T2T genome assembly: PN40024.T2T.fa

The PN40024.T2T gene annotation: PN40024.gff3

The PN40024.T2T TE annotation: PN40024.TE.gff

The PN40024.T2T centromere annotation: PN40024.trf.gff3

The PN40024.T2T protein sequence: PN40024.protein.fa

The PN40024.T2T cds sequence: PN40024.cds.fa

Comparison of gene annotation among PN_T2T and 12X.v0, 12X.v2, PN40024.v4, PN40024.v4.1: correlation.list

Mitochondrial assembly sequence of PN40024: PN_T2T_mit.fa

Annotation of mitochondrial assembly for PN40024:PN_T2T_mit.gff3

Chloroplast assembly sequence of PN40024: PN_T2T_chl.fa

Annotation of chloroplast assembly for PN40024: PN_T2T_chl.gff3

Citation: 

Please cite this paper when using the data of PN_T2T for your publications.

Xiaoya Shi, Shuo Cao, Xu Wang, Siyang Huang, Yue Wang, Zhongjie Liu, Wenwen Liu, Xiangpeng Leng, Yanling Peng, Nan Wang, Yiwen Wang, Zhiyao Ma, Xiaodong Xu, Fan Zhang, Hui Xue, Haixia Zhong, Yi Wang, Kekun Zhang, Amandine Velt, Komlan Avia, Daniela Holtgräwe, Jérôme Grimplet, José Tomás Matus, Doreen Ware, Xinyu Wu, Haibo Wang, Chonghuai Liu, Yuling Fang, Camille Rustenholz, Zongming Cheng, Hua Xiao, Yongfeng Zhou, The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding, Horticulture Research, Volume 10, Issue 5, May 2023, uhad061, https://doi.org/10.1093/hr/uhad061