cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15127433
title: Temperature-dependent K-edge EXAFS spectra of bcc (Cr, Mo, W) and fcc (Cu, Ag) metal foils

description: The data set contains experimental temperature-dependent (T=10-300 K) K-edge EXAFS spectra of bcc (Cr, Mo, W) and fcc (Cu, Ag) metal foils from 

A. Kuzmin, V. Dimitrijevs, I. Pudza, A. Kalinko,The use of the correlated Debye model for extended x-ray absorption fine structure-based thermometry in body-centered cubic and face-centered cubic metals,Phys. Status Solidi A (2024) 2400623.Doi: 10.1002/pssa.202400623.
DOI: 10.5281/zenodo.15127434
title: Temperature-dependent K-edge EXAFS spectra of bcc (Cr, Mo, W) and fcc (Cu, Ag) metal foils

description: The data set contains experimental temperature-dependent (T=10-300 K) K-edge EXAFS spectra of bcc (Cr, Mo, W) and fcc (Cu, Ag) metal foils from 

A. Kuzmin, V. Dimitrijevs, I. Pudza, A. Kalinko,The use of the correlated Debye model for extended x-ray absorption fine structure-based thermometry in body-centered cubic and face-centered cubic metals,Phys. Status Solidi A (2024) 2400623.Doi: 10.1002/pssa.202400623.
DOI: 10.24414/rob-euref-bogo00pol
title: GNSS data of BOGO00POL, Borowa Gora, Poland

description: Permanent GNSS station dataset as daily RINEX files
DOI: 10.15468/dl.6netat
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "IucnRedListCategory is one of (NE, DD, LC, NT, VU, EN, CR, EW, EX)",
 "OccurrenceStatus is Present",
 "TaxonKey is Dermatemydidae"
 ]
}

 The dataset includes 240 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000865-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xmefn2
title: Occurrence Download

description: A dataset containing 1669 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dalbergia melanoxylon Guill. & Perr.",
 "Continent is Africa"
 ]
}

 The dataset includes 1669 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000866-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15131/shef.data.26355520
title: Electroabsorption in InGaAs and GaAsSb p-i-n photodiodes

description: The application of an electric field to a semiconductor can alter its absorption properties. This electroabsorption effect can have a significant impact on the quantum efficiency of detector structures. The photocurrents in bulk InGaAs and GaAsSb p-i-n photodiodes with intrinsic absorber layer thicknesses ranging from 1 to 4.8 µm have been investigated. By using phase-sensitive photocurrent measurements as a function of wavelength, the absorption coefficients as low as 1cm-1 were extracted for electric fields up to 200 kV/cm. Our findings show that while the absorption coefficients reduce between 1500 – 1650 nm for both materials when subject to an increasing electric field, an absorption coefficient of 100 cm-1 can be obtained at a wavelength of 2 µm, well beyond the band gap energy when they are subject to a high electric field. The results are shown to be in good agreement with theoretical models that use Airy functions to solve for the absorption coefficients in a uniform electric field.
DOI: 10.15131/shef.data.26355520.v1
title: Electroabsorption in InGaAs and GaAsSb p-i-n photodiodes

description: The application of an electric field to a semiconductor can alter its absorption properties. This electroabsorption effect can have a significant impact on the quantum efficiency of detector structures. The photocurrents in bulk InGaAs and GaAsSb p-i-n photodiodes with intrinsic absorber layer thicknesses ranging from 1 to 4.8 µm have been investigated. By using phase-sensitive photocurrent measurements as a function of wavelength, the absorption coefficients as low as 1cm-1 were extracted for electric fields up to 200 kV/cm. Our findings show that while the absorption coefficients reduce between 1500 – 1650 nm for both materials when subject to an increasing electric field, an absorption coefficient of 100 cm-1 can be obtained at a wavelength of 2 µm, well beyond the band gap energy when they are subject to a high electric field. The results are shown to be in good agreement with theoretical models that use Airy functions to solve for the absorption coefficients in a uniform electric field.
DOI: 10.6084/m9.figshare.28719110
title: Supplemental Data for Babicheva et al. "Store-operated Ca2+ entry is involved in endothelium-to-mesenchymal transition in lung vascular endothelial cells"

description: Endothelial-to-mesenchymal transition (EndMT) is a biological process that converts endothelial cells to mesenchymal cells with increased proliferative and migrative abilities. EndMT has been implicated in the development of pulmonary vascular remodeling in pulmonary arterial hypertension (PAH), a fatal and progressive lung vascular disease. Transforming growth factor β<sub>1</sub> (TGF-β<sub>1</sub>), an inflammatory cytokine, is known to induce EndMT in many types of endothelial cells including lung vascular endothelial cells (LVEC). An increase in cytosolic free Ca<sup>2+</sup> concentration ([Ca<sup>2+</sup>]<sub>cyt</sub>) is a major stimulus for cellular proliferation and phenotypic transition, but it is unknown whether Ca<sup>2+</sup> signaling is involved in EndMT. In this study we tested the hypothesis that TGF-β<sub>1</sub>-induced EndMT in human LVEC is Ca<sup>2+</sup>-dependent. Treatment of LVEC with TGF-β<sub>1</sub> for 5-7 days resulted in increase in SNAI1/2 expression, induction of EndMT, upregulation of STIM/Orai1 and enhancement of store-operated Ca<sup>2+</sup> entry (SOCE). Removal (or chelation) of extracellular or intracellular Ca<sup>2+</sup> with EGTA or BAPTA-AM respectively abolished EndMT in response to TGF-β<sub>1</sub>. Moreover, EGTA diminished TGF-β<sub>1</sub>-induced increase in SNAI in a dose-dependent manner. Knockdown of either STIM1 or Orai1 was sufficient to prevent TGF-β-mediated increase in SNAI1/2 and EndMT, but did not rescue the continuous adherent junctions. Blockade of Orai1 channels by AnCoA4 inhibited TGF-β-mediated EndMT and restored PECAM1-positive continuous adherent junctions. In conclusion, intracellular Ca<sup>2+</sup> signaling plays a critical role in TGF-β-associated EndMT through enhanced SOCE and STIM1-Orai1 interaction. Thus, targeting Ca<sup>2+</sup> signaling pathways regulating EndMT may be a novel therapeutic approach to treat PAH and other forms of pre-capillary pulmonary hypertension.
DOI: 10.15468/dl.r34qcx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Aetomylaeus bovinus",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Material sample)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000867-250402121839773/datasets/export for details.
DOI: 10.15468/dl.c8cnkh
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-96.73936 17.01585,-96.73084 17.01585,-96.73084 17.02576,-96.73936 17.02576,-96.73936 17.01585))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000868-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xw2ax9
title: Occurrence Download

description: A dataset containing 571 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dalechampia scandens L.",
 "Continent is Africa"
 ]
}

 The dataset includes 571 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000869-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ear8t
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is CAN.11_1",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Anthoceros agrestis Paton, Riccia beyrichiana Hampe ex Lehm., Riccia bifurca Hoffm., Riccia cavernosa Hoffm.)",
 "Year 1990-2024"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000870-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ejcjea
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Aidablennius sphynx",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Material sample)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000871-250402121839773/datasets/export for details.
DOI: 10.15468/dl.rgqxte
title: Occurrence Download

description: A dataset containing 6804 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Daniellia oliveri (Rolfe) Hutch. & Dalziel",
 "Continent is Africa"
 ]
}

 The dataset includes 6804 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000872-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.am7mav
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Alosa fallax",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Material sample)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000873-250402121839773/datasets/export for details.
DOI: 10.15468/dl.zam374
title: Occurrence Download

description: A dataset containing 398 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Desmodium ospriostreblum Chiov.",
 "Continent is Africa"
 ]
}

 The dataset includes 398 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000874-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e221742
title: Zoo U Intervention Study 2018 (IES Goal 3)

description: This
study evaluates the efficacy of ZooU®, an individualized computer game, to improve
social and emotional learning (SEL) skills in elementary school students.
Reflex® Math served as an active control condition. Two cohorts of students participated,
prior to and following COVID-induced school closures. Cohort 1 included 585
students from 37 classrooms in two elementary schools in the Pacific Northwest
region of the United States (US). Participating students (48% female) were
socioeconomically (41% low-income households), ethnically (21% Hispanic), and
racially (1% Native American, 7% Asian, 6% Black, 7% Pacific Islander, 39%
White, 3% other race, 16% multiple races) diverse. Cohort 2 included 523
students from 42 classrooms in six elementary schools in the Southeastern
region of the US. Participating students (50% female) were socioeconomically (50%
low-income households), ethnically (7% Hispanic), and racially (&lt;1% Asian,
55% Black, 34% White, 1% other race, 3% multiple races) diverse. Results
indicated significant main effects of ZooU on SEL knowledge and teacher-rated
behaviors in cohort 1 (Cohen d = 0.13 to 0.35) but not cohort 2 (Cohen
d = -.27 to .15). Grade was a moderator in cohort 1 (ZooU was more
effective for 2nd graders). Classroom climate was a moderator in both
cohorts (ZooU was more effective in less supportive classrooms in cohort 1 and
more supportive classrooms in cohort 2). Within-treatment group analyses indicated
that increased levels of ZooU game play were associated with improvements in SEL
knowledge in a dose-dependent manner. The study highlights the potential for game-based
interventions to serve as a scalable, cost-effective method (estimated $21/
student) for improving SEL in early elementary grades.
description: No weights were created or used.
description: Response Rates: Ninety-six
percent of all students (97% in treatment, 95.8% in control groups) who
completed a pretest also completed a posttest assessment
description: Presence of Common Scales: SELWeb, Social Skills Improvement System
description: Convenience sample was used.
description: Students in grade 2-4. Smallest Geographic Unit: NA
description: cognitive assessment test; mixed mode; web-based survey;
DOI: 10.3886/e221742v1
title: Zoo U Intervention Study 2018 (IES Goal 3)

description: This
study evaluates the efficacy of ZooU®, an individualized computer game, to improve
social and emotional learning (SEL) skills in elementary school students.
Reflex® Math served as an active control condition. Two cohorts of students participated,
prior to and following COVID-induced school closures. Cohort 1 included 585
students from 37 classrooms in two elementary schools in the Pacific Northwest
region of the United States (US). Participating students (48% female) were
socioeconomically (41% low-income households), ethnically (21% Hispanic), and
racially (1% Native American, 7% Asian, 6% Black, 7% Pacific Islander, 39%
White, 3% other race, 16% multiple races) diverse. Cohort 2 included 523
students from 42 classrooms in six elementary schools in the Southeastern
region of the US. Participating students (50% female) were socioeconomically (50%
low-income households), ethnically (7% Hispanic), and racially (&lt;1% Asian,
55% Black, 34% White, 1% other race, 3% multiple races) diverse. Results
indicated significant main effects of ZooU on SEL knowledge and teacher-rated
behaviors in cohort 1 (Cohen d = 0.13 to 0.35) but not cohort 2 (Cohen
d = -.27 to .15). Grade was a moderator in cohort 1 (ZooU was more
effective for 2nd graders). Classroom climate was a moderator in both
cohorts (ZooU was more effective in less supportive classrooms in cohort 1 and
more supportive classrooms in cohort 2). Within-treatment group analyses indicated
that increased levels of ZooU game play were associated with improvements in SEL
knowledge in a dose-dependent manner. The study highlights the potential for game-based
interventions to serve as a scalable, cost-effective method (estimated $21/
student) for improving SEL in early elementary grades.
description: No weights were created or used.
description: Response Rates: Ninety-six
percent of all students (97% in treatment, 95.8% in control groups) who
completed a pretest also completed a posttest assessment
description: Presence of Common Scales: SELWeb, Social Skills Improvement System
description: Convenience sample was used.
description: Students in grade 2-4. Smallest Geographic Unit: NA
description: cognitive assessment test; mixed mode; web-based survey;
DOI: 10.15468/dl.34uwzt
title: Occurrence Download

description: A dataset containing 6505 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pan troglodytes (Blumenbach, 1775)"
 ]
}

 The dataset includes 6505 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000876-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ty6ykj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Anguilla anguilla",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Material sample)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000875-250402121839773/datasets/export for details.
DOI: 10.15468/ahjhjx
title: Listado taxonómico de peces y lampreas con distribución en México

description: Esta lista reúne la información taxonómica y nomenclatural de las especies de peces y lampreas en México. Contiene un total de 6,668 registros, de los cuales 3,659 corresponden a especies nativas, 202 introducidas y 2,807 taxones con estatus sinónimo, clasificadas de acuerdo con las propuestas más reconocidas y actuales, representando en conjunto 358 familias y 1,791 géneros. El arreglo taxonómico se basa en Van der Laan et al., (2024). El endemismo de 498 especies es con base en Fricke et al. (2024), Ehemann et al. (2018) y Lozano-Vilano & De la Maza-Benignos (2016).
DOI: 10.60707/phrj-n556
title: STEM imaging and EELS of vesicles in pyrrhotite in OREX-501044-104
DOI: 10.60707/vjre-er70
title: STEM imaging and EELS of vesicles in pyrrhotite in OREX-501044-104
DOI: 10.60707/6p24-d278
title: STEM imaging and EELS of vesicles in pyrrhotite in OREX-501044-104
DOI: 10.60707/1z2n-8f95
title: STEM imaging and EELS of vesicles in pyrrhotite in OREX-501044-104
DOI: 10.60707/kjzc-7b77
title: STEM imaging and EELS of vesicles in pyrrhotite in OREX-501044-104
DOI: 10.60707/gr99-pm13
title: STEM imaging and EELS of vesicles in pyrrhotite in OREX-501044-104
DOI: 10.60707/y1r3-xx42
title: STEM imaging and EELS of vesicles in pyrrhotite in OREX-501044-104
DOI: 10.60707/8760-dh15
title: STEM imaging and EELS of vesicles in pyrrhotite in OREX-501044-104
DOI: 10.15468/dl.aaxqg4
title: Occurrence Download

description: A dataset containing 9169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Detarium microcarpum Guill. & Perr.",
 "Continent is Africa"
 ]
}

 The dataset includes 9169 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000877-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eyr95e
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Month is one of (June, July, August)",
 "OccurrenceStatus is Present",
 "TaxonKey is Vermivora cyanoptera Olson & Reveal, 2009"
 ]
}

 The dataset includes 176 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000878-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bj6v64
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Anthias anthias",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Material sample)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000879-250402121839773/datasets/export for details.
DOI: 10.5281/zenodo.15092708
title: Microbiome_effect_on_lipid_metabolism

description: Microbiome_effect_on_lipid_metabolism

This dataset is part of the project by Maria Zimmermann-Kogadeeva in collaboration with Josef Ecker and teams.

It contains data generated in our study as well as public datasets that we used as a reference for proteomics analysis. 

Subfolders:



proteomics_data - proteomics data from our study in mice colonized with OMM12 community

lipidomics data - lipidomics data from our study in mice colonized with OMM12 community

Duparc_et_al - data from Duparc et al, Hepatocyte MyD88 affects bile acids, gut microbiota and metabolome contributing to regulate glucose and lipid metabolism, Gut (2017), https://doi.org/10.1136/gutjnl-2015-310904

expression_atlas - public data downloaded from ExpressionAtlas (Moreno et al, Expression Atlas update: gene and protein expression in multiple species, Nucleic Acids Research (2022), https://doi.org/10.1093/nar/gkab1030)

UNIPROT - Affymetrix Mouse UNIPROT ID mapping file downloaded from Uniprot (The UniProt ConsortiumUniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research (2025), https://doi.org/10.1093/nar/gkae1010)


We are applying the Creative Commons Attribution 4.0 International License for all copyrightable material in this repository. This means that anyone is free to copy, reuse, display and distribute the information in our folder, provided you give us credit by citing this repository. 

If you are reusing data provided in this folder but downloaded from other courses, please include the additional credit information provided in each subfolder. 

https://creativecommons.org/licenses/by/4.0/