cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14322846
title: When roads cross streams: fish assemblage responses to fluvial fragmentation in lowland Amazonian streams

description: ABSTRACT Roads affect biodiversity by increasing mortality rates, habitat loss, and natural landscape fragmentation. Poorly installed culverts can impound streams, changing the environmental conditions, and affecting aquatic communities. We evaluated the effects of road crossings on the taxonomic composition and functional structure of fish assemblages in lowland eastern Amazonian streams, Brazil. We tested the hypothesis that the presence of road-derived impoundments affects assemblage taxonomic and functional composition and structure. Two predictions were addressed: (1) Species and functional group composition will differ in impounded reaches in relation to lotic reaches; (2) Assemblages in downstream lotic reaches will be richer in species and functional groups in relation to upstream lotic and impoundment reaches. We sampled five streams crossed by roads presenting impoundment formation, conducted by visual census (day, dusk, and night) in 200 m line transects. Assemblage composition from lentic reaches was different from lotic reaches, and Shannon diversity from downstream reaches was different from upstream and impoundment, however, beta diversity partitioning between lotic reaches showed higher nestedness contribution, reinforcing the role of impoundment in limiting fish dispersal between lotic reaches. These results suggest that impoundments impose environmental and dispersal constraints to fish, affecting their longitudinal distribution in streams fragmented by roads.
DOI: 10.6084/m9.figshare.14322846.v1
title: When roads cross streams: fish assemblage responses to fluvial fragmentation in lowland Amazonian streams

description: ABSTRACT Roads affect biodiversity by increasing mortality rates, habitat loss, and natural landscape fragmentation. Poorly installed culverts can impound streams, changing the environmental conditions, and affecting aquatic communities. We evaluated the effects of road crossings on the taxonomic composition and functional structure of fish assemblages in lowland eastern Amazonian streams, Brazil. We tested the hypothesis that the presence of road-derived impoundments affects assemblage taxonomic and functional composition and structure. Two predictions were addressed: (1) Species and functional group composition will differ in impounded reaches in relation to lotic reaches; (2) Assemblages in downstream lotic reaches will be richer in species and functional groups in relation to upstream lotic and impoundment reaches. We sampled five streams crossed by roads presenting impoundment formation, conducted by visual census (day, dusk, and night) in 200 m line transects. Assemblage composition from lentic reaches was different from lotic reaches, and Shannon diversity from downstream reaches was different from upstream and impoundment, however, beta diversity partitioning between lotic reaches showed higher nestedness contribution, reinforcing the role of impoundment in limiting fish dispersal between lotic reaches. These results suggest that impoundments impose environmental and dispersal constraints to fish, affecting their longitudinal distribution in streams fragmented by roads.
DOI: 10.6084/m9.figshare.14322879
title: Reproductive biology of Parona signata (Actinopterygii: Carangidae), a valuable economic resource, in the coastal area of Mar del Plata, Buenos Aires, Argentina

description: ABSTRACT The reproductive biology and life cycle of Parona leatherjacket, Parona signata, present in Mar del Plata (38º 00’S 57º 33’W) coast, was studied. Samples were obtained monthly since January 2018 to February 2019 from the artisanal fishermen and the commercial fleet of Mar del Plata. A histological analysis was carried out and the main biologic-reproductive parameters were estimated: fecundity, oocyte frequency distribution and gonadosomatic index (GSI). Both the macroscopic and microscopic analyses showed reproductive activity in March and November. Mature females were recorded, which showed hydrated oocytes, as was evidenced by the histological procedures. Both, the histological and the oocyte diameter distribution analyses showed the presence of all oocyte maturation stages in ovaries in active-spawning subphase, indicating that P. signata is a multiple spawner with indeterminate annual fecundity. Batch fecundity ranged between 36,426 and 126,035 hydrated oocytes/ female. Relative fecundity ranged between 42 and 150 oocytes/ g female ovary free.
DOI: 10.6084/m9.figshare.14322879.v1
title: Reproductive biology of Parona signata (Actinopterygii: Carangidae), a valuable economic resource, in the coastal area of Mar del Plata, Buenos Aires, Argentina

description: ABSTRACT The reproductive biology and life cycle of Parona leatherjacket, Parona signata, present in Mar del Plata (38º 00’S 57º 33’W) coast, was studied. Samples were obtained monthly since January 2018 to February 2019 from the artisanal fishermen and the commercial fleet of Mar del Plata. A histological analysis was carried out and the main biologic-reproductive parameters were estimated: fecundity, oocyte frequency distribution and gonadosomatic index (GSI). Both the macroscopic and microscopic analyses showed reproductive activity in March and November. Mature females were recorded, which showed hydrated oocytes, as was evidenced by the histological procedures. Both, the histological and the oocyte diameter distribution analyses showed the presence of all oocyte maturation stages in ovaries in active-spawning subphase, indicating that P. signata is a multiple spawner with indeterminate annual fecundity. Batch fecundity ranged between 36,426 and 126,035 hydrated oocytes/ female. Relative fecundity ranged between 42 and 150 oocytes/ g female ovary free.
DOI: 10.6084/m9.figshare.14322877
title: Genetic differentiation through dispersal and isolation in two freshwater fish species from coastal basins of Northeastern Brazil

description: Abstract The coastal basins in Northeastern Brazil used in this study make up two different ecoregions for freshwater fishes (Amazonas estuary and coastal drainages, and Parnaiba) and two areas of endemism for Characiformes (Maranhão and Parnaíba), and exhibits a diversified yet poorly explored freshwater fish fauna. The population structure and biogeography of two migratory freshwater fish species that are commercially exploited from Maranhão and Parnaíba regions were herein analyzed. Molecular sequence data and statistical analyses were used to estimate haplotypes networks and lineage divergence times and correlated with hydrographic history of drainage and paleodrainages of the region. A total of 171 sequences was produced for both species, Schizodon dissimilis (coI, n = 70) and Prochilodus lacustris (D-loop, n = 101). All analyses identified the presence of three genetically delimited groups of S. dissimilis and six groups of P. lacustris. The lineage time analyses indicate diversification among these species within the past 1 million year. The results indicate the influence of geodispersal in the formation of the ichthyofauna in the studied area through headwater stream capture events and reticulated connections between the mouths of rivers along the coastal plain due to eustatic sea level fluctuations.
DOI: 10.6084/m9.figshare.14322877.v1
title: Genetic differentiation through dispersal and isolation in two freshwater fish species from coastal basins of Northeastern Brazil

description: Abstract The coastal basins in Northeastern Brazil used in this study make up two different ecoregions for freshwater fishes (Amazonas estuary and coastal drainages, and Parnaiba) and two areas of endemism for Characiformes (Maranhão and Parnaíba), and exhibits a diversified yet poorly explored freshwater fish fauna. The population structure and biogeography of two migratory freshwater fish species that are commercially exploited from Maranhão and Parnaíba regions were herein analyzed. Molecular sequence data and statistical analyses were used to estimate haplotypes networks and lineage divergence times and correlated with hydrographic history of drainage and paleodrainages of the region. A total of 171 sequences was produced for both species, Schizodon dissimilis (coI, n = 70) and Prochilodus lacustris (D-loop, n = 101). All analyses identified the presence of three genetically delimited groups of S. dissimilis and six groups of P. lacustris. The lineage time analyses indicate diversification among these species within the past 1 million year. The results indicate the influence of geodispersal in the formation of the ichthyofauna in the studied area through headwater stream capture events and reticulated connections between the mouths of rivers along the coastal plain due to eustatic sea level fluctuations.
DOI: 10.6084/m9.figshare.14322907
title: Habitat use, trophic, and occurrence patterns of Inpaichthys kerri and Hyphessobrycon vilmae (Pisces: Characidae) in Amazonian streams

description: Abstract Fish ecomorphology and diet can help us to understand species response to impacts and coexistence patterns. Thus, we developed a comparative analysis of ecomorphology and diet of Inpaichthys kerri and Hyphessobrycon vilmae and tested for environmental variables that explain their abundance in headwater streams. We sampled streams from the Aripuanã River basin, Mato Grosso State, Brazil. We sampled environmental variables following a standardized protocol and used 30 and 80 individuals from each species to obtain ecomorphological attributes and feeding index, respectively. To identify environmental variables that influence species abundance, we developed generalized additive mixed models. Inpaichthys kerri presented broader and deeper caudal peduncles, more dorsal eyes, and larger fins, besides the lower consumption of aquatic insects, algae, and detritus when compared to H. vilmae. Inpaichthys kerri was more abundant in fast waters with little amounts of marginal grasses, conditions associated with more forested streams, while H. vilmae was more in streams with more abundant marginal grasses from pasture. Deforestation in the Aripuanã basin threatens the persistence of I. kerri, since its optimal environmental conditions tend to be replaced by H. vilmae optimal conditions. Natural history helps us to understand species occurrence and represents a substantial contribution for more effective conservation measures.
DOI: 10.6084/m9.figshare.14322907.v1
title: Habitat use, trophic, and occurrence patterns of Inpaichthys kerri and Hyphessobrycon vilmae (Pisces: Characidae) in Amazonian streams

description: Abstract Fish ecomorphology and diet can help us to understand species response to impacts and coexistence patterns. Thus, we developed a comparative analysis of ecomorphology and diet of Inpaichthys kerri and Hyphessobrycon vilmae and tested for environmental variables that explain their abundance in headwater streams. We sampled streams from the Aripuanã River basin, Mato Grosso State, Brazil. We sampled environmental variables following a standardized protocol and used 30 and 80 individuals from each species to obtain ecomorphological attributes and feeding index, respectively. To identify environmental variables that influence species abundance, we developed generalized additive mixed models. Inpaichthys kerri presented broader and deeper caudal peduncles, more dorsal eyes, and larger fins, besides the lower consumption of aquatic insects, algae, and detritus when compared to H. vilmae. Inpaichthys kerri was more abundant in fast waters with little amounts of marginal grasses, conditions associated with more forested streams, while H. vilmae was more in streams with more abundant marginal grasses from pasture. Deforestation in the Aripuanã basin threatens the persistence of I. kerri, since its optimal environmental conditions tend to be replaced by H. vilmae optimal conditions. Natural history helps us to understand species occurrence and represents a substantial contribution for more effective conservation measures.
DOI: 10.6084/m9.figshare.14322928.v1
title: First study of food webs in a large glacial river: the trophic role of invasive trout

description: Abstract The aim of this study was to determine the food webs structure of a large Patagonian river in two river sections (Upstream and Midstream) and to evaluate isotopic overlap between native and introduced species. We used stable isotope analyses of δ15N and δ13C and stomach content. The Upstream section had a more complex food webs structure with a greater richness of macroinvertebrates and fish species than Midstream. Upstream basal resources were dominated by filamentous algae. Lake Trout were found to have a higher trophic position than all other fish species in that area although, the most abundant fish species, were Rainbow Trout. Depending on the life stage, Rainbow Trout shifted from prey to competitor/predator. In the Midstream section, the base of the food webs was dominated by coarse particulate organic matter, and adult Rainbow Trout had the highest trophic level. Isotopic values changed among macroinvertebrates and fish for both areas. The two most abundant native and invasive species — Puyen and Rainbow Trout — showed an isotopic separation in Midstream but did not in Upstream areas. The presence of invasive fish that occupy top trophic levels can have a significant impact on native fish populations that have great ecological importance in the region.
DOI: 10.6084/m9.figshare.14322928
title: First study of food webs in a large glacial river: the trophic role of invasive trout

description: Abstract The aim of this study was to determine the food webs structure of a large Patagonian river in two river sections (Upstream and Midstream) and to evaluate isotopic overlap between native and introduced species. We used stable isotope analyses of δ15N and δ13C and stomach content. The Upstream section had a more complex food webs structure with a greater richness of macroinvertebrates and fish species than Midstream. Upstream basal resources were dominated by filamentous algae. Lake Trout were found to have a higher trophic position than all other fish species in that area although, the most abundant fish species, were Rainbow Trout. Depending on the life stage, Rainbow Trout shifted from prey to competitor/predator. In the Midstream section, the base of the food webs was dominated by coarse particulate organic matter, and adult Rainbow Trout had the highest trophic level. Isotopic values changed among macroinvertebrates and fish for both areas. The two most abundant native and invasive species — Puyen and Rainbow Trout — showed an isotopic separation in Midstream but did not in Upstream areas. The presence of invasive fish that occupy top trophic levels can have a significant impact on native fish populations that have great ecological importance in the region.
DOI: 10.6084/m9.figshare.14322930
title: Genetic diversity and aquaculture conservation for a threatened Neotropical catfish

description: Abstract Due to the ecological importance of Lophiosilurus alexandri, the present work evaluated its genetic representativeness by comparing wild stocks to broodstocks that were kept at three restocking hatcheries along the São Francisco River. A total of 97 samples were genotyped for newly developed microsatellite markers. Low levels of genetic diversity (average alleles number of 4.2 alleles) were detected in all cases, being more severe in captive groups. Significant pairwise FST and DEST values, Structure, and DAPC analyses showed that wild animals were structured in two groups, and a third group was formed by captive animals, evidencing the need to adopt genetic criteria to retain genetic diversity in the hatcheries. For this reason, three full-sib families were constructed to select the best relatedness estimator for L. alexandri and establish a cut-off value aimed to avoid full-sibling matings in the hatcheries. Two estimators, Wang (RW) and Lynch & Li (RLL), were accurate in reflecting the relatedness level for full-sibs in this species. According to them, less than 50% of the potential breeding matings in the three hatcheries are advisable. The innate low diversity of L. alexandri highlights the importance of minimizing inbreeding and retaining genetic diversity towards the species recovery.
DOI: 10.6084/m9.figshare.14322930.v1
title: Genetic diversity and aquaculture conservation for a threatened Neotropical catfish

description: Abstract Due to the ecological importance of Lophiosilurus alexandri, the present work evaluated its genetic representativeness by comparing wild stocks to broodstocks that were kept at three restocking hatcheries along the São Francisco River. A total of 97 samples were genotyped for newly developed microsatellite markers. Low levels of genetic diversity (average alleles number of 4.2 alleles) were detected in all cases, being more severe in captive groups. Significant pairwise FST and DEST values, Structure, and DAPC analyses showed that wild animals were structured in two groups, and a third group was formed by captive animals, evidencing the need to adopt genetic criteria to retain genetic diversity in the hatcheries. For this reason, three full-sib families were constructed to select the best relatedness estimator for L. alexandri and establish a cut-off value aimed to avoid full-sibling matings in the hatcheries. Two estimators, Wang (RW) and Lynch & Li (RLL), were accurate in reflecting the relatedness level for full-sibs in this species. According to them, less than 50% of the potential breeding matings in the three hatcheries are advisable. The innate low diversity of L. alexandri highlights the importance of minimizing inbreeding and retaining genetic diversity towards the species recovery.
DOI: 10.5066/p9gzzl8s
title: Basin Characteristics Rasters for West Virginia StreamStats 2021

description: The U.S. Geological Survey (USGS) has calculated over 25 different basin characteristics as part of preparing the West Virginia StreamStats 2021 application. These datasets are raster representations of various environmental, geological, and land use attributes within the West Virginia StreamStats 2021 study area and will be served in the West Virginia StreamStats 2021 application to describe delineated watersheds. The StreamStats application provides access to spatial analytical tools that are useful for water-resources planning and management, and for engineering and design purposes. The map-based user interface can be used to delineate drainage areas, get basin characteristics, and estimates of flow statistics for data-collection stations and user-selected ungaged sites.
DOI: 10.6084/m9.figshare.14322961
title: Parturition time for the Blacktip shark, Carcharhinus limbatus (Carcharhiniformes: Carcharhinidae), in Southwestern Atlantic

description: Abstract The determination of the period of parturition and identification of nursery areas are fundamental for the management and conservation of a fishing resource. Through combination of monthly abundance, length measurements, and development time of embryos we inferred about parturition time of the Blacktip sharks, Carcharhinus limbatus, from Southwestern Atlantic. Specimens of C. limbatus were caught from 2002 and 2008 by artisanal fleets from three different locations along the Brazilian coast using gillnets (mesh width ranging between 30 and 120 mm between opposite knots and operating from 9 to 120 m in depth), handlines (19 to 140 m depth) and longlines (6 to 90 m depth). Through a comparative analysis of fisheries landing data collected, we have verified neonatal (&lt; 90 cm) catch peaks at specific times of the year in different locations and, matching with birth prediction of embryos, propose that C. limbatuspresents a well-defined parturition time in late spring-early summer in Southwestern Atlantic. Moreover, we indicate supposed nursery grounds for the species along the Brazilian coast. This information will be crucial for stock assessments of the species and may serve as a basis for determining fisheries management measures.
DOI: 10.6084/m9.figshare.14322961.v1
title: Parturition time for the Blacktip shark, Carcharhinus limbatus (Carcharhiniformes: Carcharhinidae), in Southwestern Atlantic

description: Abstract The determination of the period of parturition and identification of nursery areas are fundamental for the management and conservation of a fishing resource. Through combination of monthly abundance, length measurements, and development time of embryos we inferred about parturition time of the Blacktip sharks, Carcharhinus limbatus, from Southwestern Atlantic. Specimens of C. limbatus were caught from 2002 and 2008 by artisanal fleets from three different locations along the Brazilian coast using gillnets (mesh width ranging between 30 and 120 mm between opposite knots and operating from 9 to 120 m in depth), handlines (19 to 140 m depth) and longlines (6 to 90 m depth). Through a comparative analysis of fisheries landing data collected, we have verified neonatal (&lt; 90 cm) catch peaks at specific times of the year in different locations and, matching with birth prediction of embryos, propose that C. limbatuspresents a well-defined parturition time in late spring-early summer in Southwestern Atlantic. Moreover, we indicate supposed nursery grounds for the species along the Brazilian coast. This information will be crucial for stock assessments of the species and may serve as a basis for determining fisheries management measures.
DOI: 10.17870/bathspa.12263129
title: About the Heads - 300-word Statement

description: <i>About the Heads</i> is a response to the collection of stone heads which have been stored in the Undercroft to Queen Anne’s Court at the Old Royal Naval College since the turn of the 18th century. <br>This item contains the 300-word Statement for the project.
DOI: 10.17870/bathspa.12263138
title: About the Heads - Research Timeline and Research Questions

description: <i>About the Heads</i> is a response to the collection of stone heads which have been stored in the Undercroft to Queen Anne’s Court at the Old Royal Naval College since the turn of the 18th century. <br>This item contains the Research Timeline and Research Questions for the project.
DOI: 10.17870/bathspa.12263138.v1
title: About the Heads - Research Timeline and Research Questions

description: <i>About the Heads</i> is a response to the collection of stone heads which have been stored in the Undercroft to Queen Anne’s Court at the Old Royal Naval College since the turn of the 18th century. <br>This item contains the Research Timeline and Research Questions for the project.
DOI: 10.17870/bathspa.12252089
title: About the Heads - Methods and Process

description: <i>About the Heads</i> is a response to the collection of stone heads which have been stored in the Undercroft to Queen Anne’s Court at the Old Royal Naval College since the turn of the 18th century. <br>This item contains evidence relating to the Methods and Process of creating and curating the <i>About the Heads</i> exhibition, which took place at the University of Greenwich’ Heritage Gallery from 18th April to 24th May 2019. <br> <b></b><i></i><sub></sub><sup></sup><br><b>Photographs of the stone heads by Camilla Wilson, used with permission.</b><br><b>This work is under copyright and may not be used without permission. Use of this repository acknowledges cooperation with its policies and relevant copyright law.</b><br><b></b><i></i><sub></sub><sup></sup><br>