cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/7jtqe-5za79
title: Lp02 ΔpilQ

description: Raw data files of Lp02 ΔpilQ
description: <strong>Tilt Series Date:</strong> 2017-03-02</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Materials Sciences F30</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor, also manually processed</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Nicholas Cianciotto at Northwestern University Medical SchoolData collected and processed by Debnath Ghosal</p>
<strong>Sample Preparation:</strong> 4 grids were frozen for Lp02 at OD= 2.8 Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-03-02-1/rawdata/</p>delta_Q0001.mrc,  Tilt Series (Pixel Size 0.39 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-03-02-1/rawdata/delta_Q0001.mrc"
        > <i class="download icon"></i> Download </a></p>

        delta_Q0001_full.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-03-02-1/3dimage_82712/delta_Q0001_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/y8htb-p8w85
title: Thermococcus koakarensis

description: Imaging Thermococcus koakarensis flagella
description: <strong>Tilt Series Date:</strong> 2016-09-19</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Thermococcus kodakarensis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Robert Gunsalus, UCLA. Data collected and processed by Kiwoo and Debnath Ghosal</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Standard Tk medium with starch and sulfur</p>
<strong>Sample Preparation:</strong> 8 grids were frozen for the this strain. Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3.5 sec. Wait time 8 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-09-19-4/3dimage_79250/</p>atlas10005_full.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-09-19-4/3dimage_79250/atlas10005_full.rec"
        > <i class="download icon"></i> Download </a></p>

        atlas10005.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-09-19-4/rawdata/atlas10005.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/8vx12-3d487
title: Thermococcus koakarensis

description: Imaging Thermococcus koakarensis flagella
description: <strong>Tilt Series Date:</strong> 2016-08-25</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Thermococcus kodakarensis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Robert Gunsalus, UCLA. Data collected and processed by Kiwoo and Debnath Ghosal</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Standard Tk medium with starch and sulfur</p>
<strong>Sample Preparation:</strong> 8 grids were frozen for the this strain. Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3.5 sec. Wait time 8 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-08-25-36/rawdata/</p>Tk_250820160036.mrc,  Tilt Series (Pixel Size 0.39 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-08-25-36/rawdata/Tk_250820160036.mrc"
        > <i class="download icon"></i> Download </a></p>

        Tk_250820160036_full.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2016-08-25-36/3dimage_78638/Tk_250820160036_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/eetdm-1kz37
title: Saccharomyces cerevisiae - 6210

description: Raw data files of Saccharomyces cerevisiae - 6210
description: <strong>Tilt Series Date:</strong> 2017-04-21</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Obtained from Dr. Markus Babst, University of Utah</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown overnight in YPD, diluted to 0.2 OD in the morning and allowed to grow till OD ~0.6.</p>
<strong>Sample Preparation:</strong> Cells were diluted to an OD of 0.2-0.25 in YPD, applied to the grid, blotted from behind manually and plunge frozen in liquid ethane-propane mix. ~200 nm lamellae were FIB milled before imaging by TEM.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-04-21-6/rawdata/</p>TS15_LamE.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-04-21-6/rawdata/TS15_LamE.mrc"
        > <i class="download icon"></i> Download </a></p>

        TS15_4bin_DB.rec,  Reconstruction (Pixel Size 0.0 nm), 195.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2017-04-21-6/3dimage_86279/TS15_4bin_DB.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.xrb3e4
title: Occurrence Download

description: A dataset containing 187091 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Specimen)",
 "Geometry POLYGON((-48.286 -16.05,-47.308 -16.05,-47.308 -15.502,-48.286 -15.502,-48.286 -16.05))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 187091 records from 211 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011475-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29178392
title: Figure2a.nc

description: Climate change attribution study.
DOI: 10.6084/m9.figshare.29178392.v1
title: Figure2a.nc

description: Climate change attribution study.
DOI: 10.15468/dl.jhdfum
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Herwigia Nielsen, 1972",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9449 -26.0614,44.9648 -26.0621,44.9648 -25.1504,43.6164 -25.1504,43.93 -25.627,44.5871 -25.7989,44.9449 -26.0614))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009158-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15554958
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250530o Initial

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250530o Initial. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15554959
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250530o Initial

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250530o Initial. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.15468/dl.ftufhv
title: Occurrence Download

description: A dataset containing 2260 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ronderosia bergii"
 ]
}

 The dataset includes 2260 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045600-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qedmns
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Cienfuegosia gerrardii, Cienfuegosia hildebrandtii)"
 ]
}

 The dataset includes 159 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045596-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.beq5tp
title: Occurrence Download

description: A dataset containing 237 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-112.3188 28.49913, -112.1688 28.49913, -112.1688 28.64913, -112.3188 28.64913, -112.3188 28.49913))"
 ]
}

 The dataset includes 237 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045598-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2bttc
title: Occurrence Download

description: A dataset containing 611 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Felidae [GBIF Backbone Taxonomy])",
 "StateProvince is one of (Valle del Cauca)"
 ]
 }
 ]
}

 The dataset includes 611 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045597-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17651863
title: Figure data for "Effect of local environment on Lyα line profile in DESI/ODIN LAEs"

description: Supplementary material to the DESI publication "Effect of local environment on Lyα line profile in DESI/ODIN LAEs" to comply with the data management plan. This contains a .npy file for each figure that contains the data necessary to reproduce each plot. Publication information will be provided when available.
DOI: 10.5281/zenodo.17651862
title: Figure data for "Effect of local environment on Lyα line profile in DESI/ODIN LAEs"

description: Supplementary material to the DESI publication "Effect of local environment on Lyα line profile in DESI/ODIN LAEs" to comply with the data management plan. This contains a .npy file for each figure that contains the data necessary to reproduce each plot. Publication information will be provided when available.
DOI: 10.5281/zenodo.17652015
title: SEM Withered Plant (BSE Series) — Kikoh Matsuura (Art–Science Archive)

description: Parent (series) record for *SEM Withered Plant (BSE)* by Kikoh Matsuura.  This record serves as the hub for all child datasets in the series.

**Files included:**- A series overview (TXT) documenting scope, naming rules, citation style, and file policy- A machine-readable index (CSV) that will be updated to list child datasets (DOIs, imaging parameters, etc.)

Each child dataset contains raw, uncompressed BMP images (≈13 per set, number varies) acquired with a personally owned TECHNEX TinySEM M3-i using the BSE detector under high-vacuum conditions.  Child records provide detailed READMEs with exact parameters (accelerating voltage, working distance, vacuum, pixel size, field of view, frame time, coating).

This parent provides a stable concept DOI for the entire *SEM Withered Plant (BSE)* series.  Child datasets link back via *IsPartOf*, and this parent enumerates them via *HasPart*.  

*This series visualizes the hidden order and chance in withered plants through SEM-BSE, leaving a unique trace at the boundary between art and science.*
DOI: 10.15468/dl.bjwyq5
title: Occurrence Download

description: A dataset containing 17129 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Laguncularia racemosa"
 ]
}

 The dataset includes 17129 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045601-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17651775
title: Survey for Young Specialists

description: A survey was selected as the research method for obtaining primary data from university graduates and employers in the labor market of Almaty city from 30/12/2024 to 20/01/2025
DOI: 10.5281/zenodo.17651774
title: Survey for Young Specialists

description: A survey was selected as the research method for obtaining primary data from university graduates and employers in the labor market of Almaty city from 30/12/2024 to 20/01/2025
DOI: 10.15468/dl.y5udfd
title: Occurrence Download

description: A dataset containing 1679 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Heliconius erato"
 ]
}

 The dataset includes 1679 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045604-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7281/t1/crheah
title: Data associated the publication: Static polystyrene gate charge density modulation of dinaphthothienothiophene with tetrafluorotetracyanoquinodimethane layer doping: Evidence from conductivity and Seebeck coefficient measurements and correlations

description: We relate the static charging of organic field effect transistor (OFET) gate dielectric polymers, the resulting change in threshold voltage shift, and the modulation of thermoelectric properties of the transistor semiconductor. We utilize a bottom gate OFET structure with cross-linkable polystyrene and plain polystyrene (XLPS/PS) bilayer dielectrics and dinaphthothienothiophene (DNTT) organic molecular semiconductor with tetrafluorotetracyanoquinodimethane (F4TCNQ) doping layer. The conductivity and Seebeck coefficient are measured before and after charging. We find that the conductivity increases significantly, while the Seebeck coefficient decreases correspondingly in a trend of S ∝ ln(σ) after the dielectrics were negatively charged, resulting in an average of 5-fold increase in power factor at the maximum charging level. Additionally, temperature-dependent conductivity measurements show that the activation energy decreases with the increasing conductivity. We calculate the Seebeck coefficient based on the activation energy and find the result is consistent with the Mott mobility edge model. This work confirms the charging mechanism in our previous published work, including the location of static charges in the bulk of the dielectric, and demonstrates modulation and enhancement of the thermoelectric properties of organic thermoelectric materials by adjacent chargeable dielectrics without changing the molecular microstructure or applying external gate voltage during operation.
DOI: 10.15468/dl.w7cm79
title: Occurrence Download

description: A dataset containing 29535 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Material sample, Material citation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leopardus pardalis"
 ]
}

 The dataset includes 29535 records from 302 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045603-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8xe37q
title: Occurrence Download

description: A dataset containing 2406 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 6.77807684894965",
 "DecimalLongitude is less than 6.78113640213404",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 2406 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045607-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7281/t1/bnsvvd
title: Data associated with the publication: Characterizing the roles of biogeochemical cycling and ocean circulation in regulating marine copper distributions

description: Despite many improvements in understanding the role of copper (Cu) in microbial metabolism, we still lack the understanding of its biogeochemistry in the ocean. One difficulty is how to interpret the linear depth profiles of dissolved Cu in the ocean. Additionally, the relationships between Cu and macronutrients in the global ocean have not been well characterized. Examining the relationships between observed Cu, PO43–, and Si, we found that Cu was more correlated with Si than PO43– in the global ocean. In our model, both biogeochemical cycling and internal circulation are important for explaining global marine Cu distributions. Our modeling results suggest a deep remineralization of Cu, which is consistent with previous lab results. Furthermore, the modeling results indicate that the uptake of Cu in the Southern Ocean is substantially higher than that in non-Southern Oceans. These results lead us to hypothesize that phytoplankton such as diatoms living in the Southern Ocean dominate marine Cu distributions.
DOI: 10.5281/zenodo.6860713
title: Improving students' privacy awareness – Analysis of a pilot survey to design a VR environment for self-paced learning

description: In this research, we measured the knowledge of students at the University of Debrecen in the field of data privacy awareness, online and password security.


Description



	
In the questionnaire, green-highlighted answer signs the correct answer to each question.
	
Total data set contains the answers to each question and the respondent's age.
	
Correct/incorrect data set contains information if the answer is correct to each question, and it also contains the respondent's age. One means the answer was correct, and zero means the answer was incorrect.
DOI: 10.5281/zenodo.6860712
title: Improving students' privacy awareness – Analysis of a pilot survey to design a VR environment for self-paced learning

description: In this research, we measured the knowledge of students at the University of Debrecen in the field of data privacy awareness, online and password security.


Description



	
In the questionnaire, green-highlighted answer signs the correct answer to each question.
	
Total data set contains the answers to each question and the respondent's age.
	
Correct/incorrect data set contains information if the answer is correct to each question, and it also contains the respondent's age. One means the answer was correct, and zero means the answer was incorrect.
DOI: 10.26025/1912/72457
title: Voltage scans from a prototype hollow core fiber isotope ratio laser spectrometer

description: This dataset consiststs of 900 one-second-long voltage acquisitions across 2000 detector channels from a prototype hollow core fiber isotope ratio laser spectrometer developed and operated at the Woods Hole Oceanographic Institution’s David Center for Ocean Innovation. Each acquisition covers a spectral range of ~2290.55 to 2299.15 cm-1. The operational conditions are 10 torr of pure CO2 in a 1m-long hollow core fiber with an inner diameter of 200 µm at 20ºC. The laser was scanned across this spectral range at 50kHz and each one-second acquisition is the average of 50000 individual spectral scans within that one second.
DOI: 10.17172/nomad/2025.11.19-1
title: NOMAD dataset: PtO2_in_MnO2
DOI: 10.15468/dl.cxuhvt
title: Occurrence Download

description: A dataset containing 19986 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Limulus polyphemus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 19986 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045610-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.