cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/wdcc/cmip5.nccnmr8
title: cmip5 output1 NCC NorESM1-M rcp85, served by ESGF

description: Project: IPCC Assessment Report 5 and Coupled Model Intercomparison Project data sets - These data belong to two projects: 1) to the Assessment Report No 5 of the International Panel on Climate Change (IPCC-AR5) and 2) to the Coupled Model Intercomparison Project No 5 (CMIP5). CMIP5 is executed by the Program for Climate Model Diagnosis and Intercomparison (PCMDI) on behalf of the World Climate Research Programme (WCRP). Most of the data is replicated between the three data nodes at the World Data Centre for Climate (WDCC), the British Atmospheric Data Centre (BADC), and the PCMDI. The project embraces the simulations with about 30 climate models of about 20 institutes worldwide. Summary: rcp85 is an experiment of the CMIP5 - Coupled Model Intercomparison Project Phase 5 ( https://pcmdi.llnl.gov/mips/cmip5 ). CMIP5 is meant to provide a framework for coordinated climate change experiments for the next five years and thus includes simulations for assessment in the AR5 as well as others that extend beyond the AR5. 4.2 rcp85 (4.2 RCP8.5) - Version 1: Future projection (2006-2100) forced by RCP8.5. RCP8.5 is a representative concentration pathway which approximately results in a radiative forcing of 8.5 W m-2 at year 2100, relative to pre-industrial conditions. RCPs are time-dependent, consistent projections of emissions and concentrations of radiatively active gases and particles. Experiment design: https://pcmdi.llnl.gov/mips/cmip5/experiment_design.html List of output variables: https://pcmdi.llnl.gov/mips/cmip5/datadescription.html Output: time series per variable in model grid spatial resolution in netCDF format Earth System model and the simulation information: CIM repository Entry name/title of data are specified according to the Data Reference Syntax ( https://pcmdi.llnl.gov/mips/cmip5/docs/cmip5_data_reference_syntax.pdf ) as activity/product/institute/model/experiment/frequency/modeling realm/MIP table/ensemble member/version number/variable name/CMOR filename.nc .
DOI: 10.17608/k6.auckland.7034063.v1
title: Rotational scans on Wood

description: Rotational scans of laser ultrasound on two samples of Radiata Pine (SG6 and SG12 grade). These are used and described in our paper submitted to Wave Motion
DOI: 10.5286/isis.e.rb1810474
title: Neutron PDF Analysis of Solid Methylaluminoxane as an Activating Catalyst Support

description: Methylaluminoxane (MAO) is the most commonly used activator and co-catalyst for transition metal complexes in olefin polymerisation reactions. Despite its widespread use, there remains considerable debate about the precise composition, structure and catalytic function. We have recently developed an insoluble form of solid MAO which acts as an activator and support in slurry-phase ethylene polymerisation. We aim to probe the structure of amorphous sMAO using total neutron scattering measurements at GEM/POLARIS. By comparison of the experimental neutron pair distribution function (PDF) for fully deuterated sMAO with X-ray PDF data of sMAO, and simulated data for DFT calculated structures of MAO, we will model the main phases of sMAO with the aim of linking structure to polymerisation activity.
DOI: 10.25934/00001149
title: An Open Label Study to Evaluate the Effects of Ezogabine/Retigabine Added to Existing Anti-epileptic Drug(s) on Urinary Voiding Function in Subjects With Partial Onset Seizures

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25989/f0cj-f069
title: Materials Experiment and Analysis Database:
DOI: 10.21227/hf84-f893
title: Datasets and codes for "Deep Probabilistic Learning for Process Quality Evaluation with a Case Study of Gear Hobbing Process"

description: Datasets and codes for "Deep Probabilistic Learning for Process Quality Evaluation with a Case Study of Gear Hobbing Process"
DOI: 10.20350/digitalcsic/8347
title: Cuenco con grafitti en el interior, de plata. Detalle del borde interior - 096_029
DOI: 10.25318/2710035101-fra
title: Dépenses courantes au titre de la recherche et développement intra-muros des entreprises en pourcentage des revenus, selon le pays de contrôle et la taille de l'effectif

description: Ce tableau contient 33 séries, avec des données pour les années 2014 - 2015 (il n'y a pas nécessairement de données pour toutes les années pour l'ensemble des combinaisons). Ce tableau contient des données telles que décrites par les dimensions suivantes (Les combinaisons ne sont pas toutes disponibles) : Géographie (1 élément : Canada) ; Pays de contrôle (3 éléments : Total, pays de contrôle; Canada; Étrangers) ; Taille de l'effectif (11 éléments : Effectif total; 1 à 4 employés; 5 à 9 employés; 10 à 19 employés; ...).
DOI: 10.4225/25/598d20360d77f
title: First vertical derivative of the Bouguer gravity grid of Northern Wiso Basin Gravity survey

description: This NTGS_North_Wiso_Gravity_P201580_SCBA267GUVD.nc grid includes ground gravity point data for the Northern Wiso Basin Gravity survey acquired for the geological survey of NT
DOI: 10.15124/crd42012003507
title: Systematic review of the literature on life story work with people with dementia in all settings

description: Systematic review protocol registration
DOI: 10.18430/m34weo
title: X-ray diffraction data for the crystal Structure of a Putative acetoin(Diacetyl) Reductase Burkholderia cenocepacia (4WEO)
DOI: 10.17632/vtp2x5jy5h.1
title: Data for: 3659758

description: Excel spreadsheet accompanying the paper.
DOI: 10.25592/dgs.corpus-type-18489
title: BERG1A^ (MEINE DGS – annotiert. Öffentliches Korpus der Deutschen Gebärdensprache, mehrere Releases)
title: MOUNTAIN1A^ (MY DGS – annotated. Public Corpus of German Sign Language, several releases)

description: Ein Type aus der Annotation von MEINEDGS mit allen seinen Tokens aus MEINEDGS: The Public DGS Corpus consists of more than 50 hours of video data from the DGS-Korpus project made available together with annotations for research purposes. In this project, data were collected all across Germany in the timeframe 2010-2012. The public corpus shows 330 informants in 4 different age groups (from 18 years on) from 13 different regions. All parts are conversations between two informants in German Sign Language (DGS). The majority of transcripts included cover discussions and reports on Deaf life and personal experiences, although there are examples of other tasks such as story retellings as well.<br>Transcripts are made available in iLex and ELAN format as well as in SRT subtitles format that can be imported in MaxQDA and other analysis tools, together with the mp4 video files in 360p50. Über diese versionsunabhängige DOI ist die jeweils neueste Version des Datensatzes auffindbar.
description: A type from the annotation of MYDGS including all its tokens in MYDGS: Das Öffentliche DGS-Korpus besteht aus mehr als 50 Stunden Video aus dem Projekt DGS-Korpus , die zusammen mit Annotationen für Forschungszwecke zur Verfügung gestellt werden. Die Datenerhebung im Projekt fand im Zeitraum 2010-2012 in ganz Deutschland statt. Das öffentliche Korpus besteht aus Gesprächen jeweils zweier Informantinnen oder Informanten in Deutscher Gebärdensprache. Das Korpus umfasst 330 Informantinnen und Informanten in vier verschiedenen Altersgruppen (ab 18 Jahren) aus 13 verschiedenen Regionen. Der Schwerpunkt der Sammlung liegt auf Transkripten von Diskussionen und Berichten über das Leben Gehörloser sowie persönliche Erfahrungen, sie enthält aber auch Beispiele anderer Erhebungsformate wie Nacherzählungen.<br>Transkripte werden im iLex- und ELAN-Format sowie als SRT-Untertiteldateien (zum Import etwa in MaxQDA) zur Verfügung gestellt. Die zugehörigen MP4-Videodaten sind durchgängig im Format 360p50. This version-dependent DOI allows you to find the latest version of the dataset.
DOI: 10.17614/q4x05xq5r
title: (1s,2r,4r)-2-azido-4-hydroxy-6-oxocyclohexyl benzoate
DOI: 10.18749/dodis-9441
title: dodis.ch/9441
DOI: 10.7270/q24q7x0x
title: BindingDB Entry 525: Histone demethylase inhibitors

description: Small molecule binding data for protein Homo sapiens lysine demethylase 2A (KDM2A), Homo sapiens lysine demethylase 2B (KDM2B), and histone lysine demethylase PHF8 isoform 2, Uniprot Q8NHM5 and Q9Y2K7
DOI: 10.21220/v5f59j
title: Cruise: YR110816, Stations:  S4941- S4946, Clay Bank, York River Virginia 1.5-hour MUDBED Calibration Survey
DOI: 10.6084/m9.figshare.17870613
title: Additional file 1 of Synovial calprotectin for the diagnosis of periprosthetic joint infection: a diagnostic meta-analysis

description: Additional file 1. Search strategy.
DOI: 10.6084/m9.figshare.8957663
title: Additional file 8: of De novo transcriptome sequencing and gene expression profiling of Magnolia wufengensis in response to cold stress

description: Table S8. Differentially expressed genes (DEGs) associated with membrane components. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.6860834
title: Dynamic MTORC1-TFEB feedback signaling regulates hepatic autophagy, steatosis and liver injury in long-term nutrient oversupply

description: Normal metabolism requires a controlled balance between anabolism and catabolism. It is not completely known how this balance can be retained when the level of nutrient supply changes in the long term. We found that in murine liver anabolism, as represented by the phosphorylation of RPS6KB (ribosomal protein S6 kinase), was soon elevated while catabolism, as represented by TFEB (transcription factor EB)-directed gene transcription and lysosomal activities, was downregulated after the administration of a high-fat diet (HFD). Surprisingly, neither the alteration in RPS6KB phosphorylation nor that in TFEB functions was static over the long course of HFD feeding. Instead, the 2 signals exhibited dynamic alterations in opposite directions, which could be explained by the dependence of MTORC1 (MTOR complex 1) activation on TFEB-supported lysosome function and the feedback suppression of TFEB by MTORC1. Disruption of the dynamics by enforced expression of TFEB in HFD-fed mice at the peaks of MTORC1 activation restored lysosome function. Consistently, interference of MTORC1 activation with rapamycin or with a constitutively activated RRAGA mutant at the peak or nadir of MTORC1 oscillation enhanced or reduced the lysosome function, respectively. These treatments also improved or exacerbated hepatic steatosis and liver injury, respectively. Finally, there was a significant inverse correlation between TFEB activation and steatosis severity in the livers of patients with non-alcohol fatty liver diseases, supporting the clinical relevance of TFEB-regulated events. Thus, maintaining catabolic function through feedback mechanisms during enhanced anabolism, which is caused by nutrient oversupply, is important for reducing liver pathology.
DOI: 10.6084/m9.figshare.20488455
title: Additional file 6 of Systematic transcriptome profiling of pyroptosis related signature for predicting prognosis and immune landscape in lower grade glioma

description: Additional file 6: Table S5. Drug or small molecule compounds predicted using L1000FWD and CMap tools.
DOI: 10.6084/m9.figshare.8957783.v1
title: Additional file 10: of The heterotrimeric G protein Î˛ subunit RGB1 is required for seedling formation in rice

description: Table S5. Genes specifically expressed in the SAM, vascular tissues and developing roots. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.20488458.v1
title: Additional file 7 of Systematic transcriptome profiling of pyroptosis related signature for predicting prognosis and immune landscape in lower grade glioma

description: Additional file 7: Table S6. RiskScore values for glioma cell lines predicted based on signature genes expression.
DOI: 10.6084/m9.figshare.13152004
title: Additional file 2 of Genetic polymorphisms of PGF and TNFAIP2 genes related to cervical cancer risk among Uygur females from China

description: Additional file 2.
DOI: 10.5281/zenodo.10492619
title: Transcriptomics of mononuclear cells of Meniere Disease (MD) patients

description: Total RNA was sequenced to a minimum of 40 million 150 bp paired-end reads (12Gb) per sample. Library preparation was performed using the NEBNext® UltraTM Directional RNA Library Prep Kit (New England BioLabs, Massachusetts, USA). RNA-seq was performed on a Novaseq 6000 (Illumina, California, USA) at the Novogene Cambridge Science Park (UK) installations.

The data files from the Novaseq 6000 sequencing platform are transformed to sequence reads by CASAVA base recognition (Base Calling). RSEM software package was used for estimating gene and isoform expression levels.  The FASTQ files were pre-processed with BBTools to remove adapters as described in the sequencing library documentation, to trim low-quality regions (discarding reads of quality lower than 26) and selecting reads with a minimum length of 135 nucleotides. Reads were aligned to the GRCh38 reference human genome assembly using STAR (version 2.5).

Differential expression analysis was performed using the ExpHunter Suite Bioconductor package, which used DESeq2 and edgeR packages. Genes are labelled as prevalent or possible differentially expressed genes (DEG), based on package results: if a gene is detected as differentially expressed by the two packages it is considered a prevalent DEG. On the other hand, if a gene is detected as differentially expressed by only one, it is considered a possible DEG. A gene is considered differentially expressed if it presents an adjusted p < 0.05 and absolute logFC ≥ 1. ExpHunter Suite performs score integration to obtain combined logFC and adjusted p-value/FDR values for each gene across all packages. The comparisons for this study were: MD patients versus controls, MDL patients versus controls, MDH patients versus controls, and MDL versus MDH patients.
DOI: 10.5281/zenodo.10492618
title: Transcriptomics of mononuclear cells of Meniere Disease (MD) patients

description: Total RNA was sequenced to a minimum of 40 million 150 bp paired-end reads (12Gb) per sample. Library preparation was performed using the NEBNext® UltraTM Directional RNA Library Prep Kit (New England BioLabs, Massachusetts, USA). RNA-seq was performed on a Novaseq 6000 (Illumina, California, USA) at the Novogene Cambridge Science Park (UK) installations.

The data files from the Novaseq 6000 sequencing platform are transformed to sequence reads by CASAVA base recognition (Base Calling). RSEM software package was used for estimating gene and isoform expression levels.  The FASTQ files were pre-processed with BBTools to remove adapters as described in the sequencing library documentation, to trim low-quality regions (discarding reads of quality lower than 26) and selecting reads with a minimum length of 135 nucleotides. Reads were aligned to the GRCh38 reference human genome assembly using STAR (version 2.5).

Differential expression analysis was performed using the ExpHunter Suite Bioconductor package, which used DESeq2 and edgeR packages. Genes are labelled as prevalent or possible differentially expressed genes (DEG), based on package results: if a gene is detected as differentially expressed by the two packages it is considered a prevalent DEG. On the other hand, if a gene is detected as differentially expressed by only one, it is considered a possible DEG. A gene is considered differentially expressed if it presents an adjusted p < 0.05 and absolute logFC ≥ 1. ExpHunter Suite performs score integration to obtain combined logFC and adjusted p-value/FDR values for each gene across all packages. The comparisons for this study were: MD patients versus controls, MDL patients versus controls, MDH patients versus controls, and MDL versus MDH patients.
DOI: 10.6084/m9.figshare.8957828
title: Additional file 7: of The heterotrimeric G protein Î˛ subunit RGB1 is required for seedling formation in rice

description: Table S2. Genotypes of the seeds in the T0-, T1-, and T2-generation transgenic seedlings. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8957792
title: Additional file 11: of The heterotrimeric G protein Î˛ subunit RGB1 is required for seedling formation in rice

description: Table S6. Gene expression involved in various response/regulatory pathways. (XLSX 82 kb)
DOI: 10.6084/m9.figshare.8957645
title: Additional file 5: of De novo transcriptome sequencing and gene expression profiling of Magnolia wufengensis in response to cold stress

description: Table S5. Lipid metabolism-related genes that were differentially expressed during cold treatment. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.8957669
title: Additional file 9: of De novo transcriptome sequencing and gene expression profiling of Magnolia wufengensis in response to cold stress

description: Table S9. Transmembrane transport-related genes that were differentially expressed during cold treatment. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.17870613.v1
title: Additional file 1 of Synovial calprotectin for the diagnosis of periprosthetic joint infection: a diagnostic meta-analysis

description: Additional file 1. Search strategy.
DOI: 10.6084/m9.figshare.13151917
title: Additional file 5 of Integration analysis of PacBio SMRT- and Illumina RNA-seq reveals candidate genes and pathway involved in selenium metabolism in hyperaccumulator Cardamine violifolia

description: Additional file 5: Table S1. Integrity annotation of all the transcripts. (XLS 24495 kb)
DOI: 10.6084/m9.figshare.13152120.v1
title: Additional file 2 of Downregulation of the ubiquitin ligase KBTBD8 prevented epithelial ovarian cancer progression

description: Additional file 2: Table 1. KBTBD8 shRNA information. This table shows all the sequences and locations of human KBTBD8 shRNAs used in this study. shRNAs were cloned into the plasmid GV248 cutted by AgeI/EcoRI. GV248 vector map is attached below. Table 2: Primers for Flag-6 × leu-KBTBD8-EGFP in pcDNA3.1 (+). This table includes primers for amplifying full-length CDS (coding sequences) of KBTBD8 and EGFP. pcDNA3.1 (+) vector map is attached below. Table 3: Primers for Q-PCR. This table outlines all primers for Q-PCR in Fig. 2h–j. Table 4: KEGG pathway classification of all differentially-expressed genes in KBTBD8-depleted cells. This table outlines all carcinogenesis-related differentially expressed genes in KBTBD8-depleted cells by KEGG pathway classification in Fig. 7k.
DOI: 10.6084/m9.figshare.8957792.v1
title: Additional file 11: of The heterotrimeric G protein Î˛ subunit RGB1 is required for seedling formation in rice

description: Table S6. Gene expression involved in various response/regulatory pathways. (XLSX 82 kb)
DOI: 10.6084/m9.figshare.8957783
title: Additional file 10: of The heterotrimeric G protein Î˛ subunit RGB1 is required for seedling formation in rice

description: Table S5. Genes specifically expressed in the SAM, vascular tissues and developing roots. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.13152141
title: Additional file 3 of Early response to heat stress in Chinese tongue sole (Cynoglossus semilaevis): performance of different sexes, candidate genes and networks

description: Additional file 3 Enriched Gene Ontology (GO) terms and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways of sex-specific DEGs under heat stress. The differentially expressed genes (DEGs) specifically changed in females, pseudomales, or males in comparison of heat-stress (HS) vs. control (CT) groups were subjected to GO enrichment analysis and resulted significant GO terms (p &lt; 0.05) were listed in Sheet 1. KEGG pathway enrichment analysis of these sex-specific DEGs was listed in Sheet 2 (p &lt; 0.05).
DOI: 10.6084/m9.figshare.13152165
title: Additional file 3 of Insights into the mechanism of Arnebia euchroma on leukemia via network pharmacology approach

description: Additional file 3 Table S1. Components of A. euchroma and content score.
DOI: 10.6084/m9.figshare.13152138.v1
title: Additional file 2 of Early response to heat stress in Chinese tongue sole (Cynoglossus semilaevis): performance of different sexes, candidate genes and networks

description: Additional file 2. Shared and sex-specific genes involved in high temperature response. Interested differentially expressed genes (DEGs) shared in females, pseudomales and males, and DEGs specifically changed in females, pseudomales or males between control (CT) and heat-stress (HS) groups were listed.
DOI: 10.6084/m9.figshare.13152168
title: Additional file 4 of Insights into the mechanism of Arnebia euchroma on leukemia via network pharmacology approach

description: Additional file 4. Table S2. Known and predicted component-target interactions.
DOI: 10.6084/m9.figshare.13152168.v1
title: Additional file 4 of Insights into the mechanism of Arnebia euchroma on leukemia via network pharmacology approach

description: Additional file 4. Table S2. Known and predicted component-target interactions.
DOI: 10.6084/m9.figshare.13152171
title: Additional file 5 of Insights into the mechanism of Arnebia euchroma on leukemia via network pharmacology approach

description: Additional file 5. Table S3. Eight central attributes of targets.
DOI: 10.6084/m9.figshare.20488466
title: Additional file 10 of A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population

description: Additional file 10: Table S10. Read depth statistics and bin size selection for CNVnator.
DOI: 10.6084/m9.figshare.13152177
title: Additional file 7 of Insights into the mechanism of Arnebia euchroma on leukemia via network pharmacology approach

description: Additional file 7. Table S5. 34 KEGG pathways.
DOI: 10.6084/m9.figshare.20488469
title: Additional file 11 of A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population

description: Additional file 11: Table S11. qPCR primer and probe sequence information.
DOI: 10.6084/m9.figshare.13152202.v2
title: Additional file 7 of Genetic architecture of cardiometabolic risks in people living with HIV

description: Additional file 7: Table S10. Prevalence and clinical impact of high European-based and multiethnic polygenic risk scores for type-2 diabetes (T2D) and myocardial infarction (MI) in people living with HIV.
DOI: 10.6084/m9.figshare.20488466.v1
title: Additional file 10 of A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population

description: Additional file 10: Table S10. Read depth statistics and bin size selection for CNVnator.
DOI: 10.6084/m9.figshare.13152117
title: Additional file 1 of Downregulation of the ubiquitin ligase KBTBD8 prevented epithelial ovarian cancer progression

description: Additional file 1: Dataset 1. This table includes scores of all the points of the ovarian tissue microarray. Table 1 in the results part was generalized from this table. Dataset 2: This table contains all upregulated genes and related information in the KBTBD8-knockdown group in contrast to control ( $$\left| {\log 2{\text{FC}}} \right| \ge 1$$ log 2 FC ≥ 1 ). Dataset 3: This table contains all downregulated genes and related information in the KBTBD8-knockdown group in contrast to control ( $$\left| {\log 2{\text{FC}}} \right| \ge 1$$ log 2 FC ≥ 1 ). Dataset 4: This table includes all 39 genes and related information that encoding proteins interacting with the KBTBD8-regulated multiple essential cell cycle kinases in Fig. 2l.
DOI: 10.6084/m9.figshare.13152177.v1
title: Additional file 7 of Insights into the mechanism of Arnebia euchroma on leukemia via network pharmacology approach

description: Additional file 7. Table S5. 34 KEGG pathways.