cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3791050_d18
title: Additional file 26: Table S17. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: GOstats results for durophage intersection set. This is an excel table of providing GOstats overrepresentation enrichment analysis results for each of the 4 durophage intersection sets. (XLS 53Â kb)
DOI: 10.6084/m9.figshare.c.3791071_d15
title: Additional file 23: Table S11. of Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

description: Compared plantTFDB, wheatTFDB and this study. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d19
title: Additional file 27: Table S18. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: WebGestalt results for scale-biter intersection set. This is an excel table of providing WebGestalt overrepresentation enrichment analysis results for each of the 4 scale-biter intersection sets. Human symbols were used for analysis and genes without orthology assignment were excluded. (XLS 74Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d20.v1
title: Additional file 28: Table S19. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: WebGestalt results for durophage intersection set. This is an excel table of providing WebGestalt overrepresentation enrichment analysis results for each of the 4 durophage intersection sets. Human symbols were used for analysis and genes without orthology assignment were excluded. (XLS 66Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d24
title: Additional file 31: Table S22. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: edgeR results table for identification of DE genes. This is a tab delimited table of the results from pair-wise comparisons among taxa at each stage to test for differential expression of genes using edgeR. GLM models were built for each stage and TMM normalization was calculated and applied at each stage. Genes filtered in a given stage are represented by NA. (GZ 10772Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d27.v1
title: Additional file 5: Table S2. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: GSEA results for Hallmark gene sets along PC axes at each stage. Excel table provides results from GSEA enrichment analysis for Hallmark gene sets along PC axes at each stage. Genes were pre-ranked by loadings on each axis prior to analysis. Human gene identifiers were used, and genes without an identifiable human ortholog were excluded from analysis. (XLS 98Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d27
title: Additional file 5: Table S2. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: GSEA results for Hallmark gene sets along PC axes at each stage. Excel table provides results from GSEA enrichment analysis for Hallmark gene sets along PC axes at each stage. Genes were pre-ranked by loadings on each axis prior to analysis. Human gene identifiers were used, and genes without an identifiable human ortholog were excluded from analysis. (XLS 98Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d29.v1
title: Additional file 7: Table S4. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: GSEA results for Hallmark gene sets for genes over- or underexpressed in the scale-biter. Excel table provides results from GSEA enrichment analysis for Hallmark gene sets in genes differentially expressed in the scale-biter. Genes were pre-ranked by logFC in the scale-biter relative to all other taxa. Human gene identifiers were used, and genes without an identifiable human ortholog were excluded from analysis. (XLS 49Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d28.v1
title: Additional file 6: Table S3. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: GSEA results for Canonical Pathways gene sets along PC axes at each stage. Excel table provides results from GSEA enrichment analysis for Canonical Pathways gene sets along PC axes at each stage. Genes were pre-ranked by loadings on each axis prior to analysis. Human gene identifiers were used, and genes without an identifiable human ortholog were excluded from analysis. (XLS 552Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d28
title: Additional file 6: Table S3. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: GSEA results for Canonical Pathways gene sets along PC axes at each stage. Excel table provides results from GSEA enrichment analysis for Canonical Pathways gene sets along PC axes at each stage. Genes were pre-ranked by loadings on each axis prior to analysis. Human gene identifiers were used, and genes without an identifiable human ortholog were excluded from analysis. (XLS 552Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d29
title: Additional file 7: Table S4. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: GSEA results for Hallmark gene sets for genes over- or underexpressed in the scale-biter. Excel table provides results from GSEA enrichment analysis for Hallmark gene sets in genes differentially expressed in the scale-biter. Genes were pre-ranked by logFC in the scale-biter relative to all other taxa. Human gene identifiers were used, and genes without an identifiable human ortholog were excluded from analysis. (XLS 49Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d30.v1
title: Additional file 8: Table S5. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: GSEA results for Hallmark gene sets for genes over- or underexpressed in the durophage. Excel table provides results from GSEA enrichment analysis for Hallmark gene sets in genes differentially expressed in the durophage. Genes were pre-ranked by logFC in the scale-biter relative to all other taxa. Human gene identifiers were used, and genes without an identifiable human ortholog were excluded from analysis. (XLS 49Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d30
title: Additional file 8: Table S5. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: GSEA results for Hallmark gene sets for genes over- or underexpressed in the durophage. Excel table provides results from GSEA enrichment analysis for Hallmark gene sets in genes differentially expressed in the durophage. Genes were pre-ranked by logFC in the scale-biter relative to all other taxa. Human gene identifiers were used, and genes without an identifiable human ortholog were excluded from analysis. (XLS 49Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d31.v1
title: Additional file 9: Table S6. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: GSEA results for Canonical Pathways gene sets for genes over- or underexpressed in the scale-biter. Excel table provides results from GSEA enrichment analysis for Canonical Pathways gene sets in genes differentially expressed in the scale-biter. Genes were pre-ranked by logFC in the scale-biter relative to all other taxa. Human gene identifiers were used, and genes without an identifiable human ortholog were excluded from analysis. (XLS 162Â kb)
DOI: 10.6084/m9.figshare.c.3791050_d31
title: Additional file 9: Table S6. of The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

description: GSEA results for Canonical Pathways gene sets for genes over- or underexpressed in the scale-biter. Excel table provides results from GSEA enrichment analysis for Canonical Pathways gene sets in genes differentially expressed in the scale-biter. Genes were pre-ranked by logFC in the scale-biter relative to all other taxa. Human gene identifiers were used, and genes without an identifiable human ortholog were excluded from analysis. (XLS 162Â kb)
DOI: 10.6084/m9.figshare.c.3791104_d1.v1
title: Additional file 1: of Serum micro-rna profiles in patients with autosomal dominant polycystic kidney disease according to hypertension and renal function

description: List of miRNAs included in the Qiagen miScript miRNA PCR Array Human Serum & Plasma 384HC in Excel format. (XLSX 12.5 KB)
DOI: 10.6084/m9.figshare.c.3791104_d1
title: Additional file 1: of Serum micro-rna profiles in patients with autosomal dominant polycystic kidney disease according to hypertension and renal function

description: List of miRNAs included in the Qiagen miScript miRNA PCR Array Human Serum & Plasma 384HC in Excel format. (XLSX 12.5 KB)
DOI: 10.15151/esrf-dc-2007535936
title: Structural anisotropy characterization of fiber-reinforced hydrogels scaffolds during extrusion-based 3D printing for soft tissue repair.

description: Engineered biomimicking soft tissues have been greatly improved by the use of extrusion-based 3D bioprinting techniques. They are classically made of fiberreinforced hydrogels with designed rheological behavior in order to give mechanical strength and structural support for the cell development. However, the mechanical properties of the extruded material which are influenced by the relationship between the hydrogel rheological behavior and the printing conditions remain unpredictable. Our team has developed a numerical approach to model the orientation of the matrix polymer chains and nanofibrils during extrusion-based 3D printing. To validate the model, the polymer and nanofibril flow-induced anisotropic orientation of the extruded material at the output of the nozzle are needed.
DOI: 10.6084/m9.figshare.c.3791131_d2.v1
title: Additional file 11: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Module membership of all filtered transcripts as defined by WGCNA. Values are the kME (module eigengene connectivity). Circadian rhythm and clock genes are highlighted in yellow (XLSX 17289Â kb).
DOI: 10.6084/m9.figshare.c.3791137_d1
title: Additional file 1: of The validity and psychometric properties of the Japanese version of the Compulsive Internet Use Scale (CIUS)

description: Translation and back translation of Japanese version of Compulsive Internet Use Scale (CIUS). (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3791131_d2
title: Additional file 11: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Module membership of all filtered transcripts as defined by WGCNA. Values are the kME (module eigengene connectivity). Circadian rhythm and clock genes are highlighted in yellow (XLSX 17289Â kb).
DOI: 10.6084/m9.figshare.c.3791131_d3.v1
title: Additional file 12: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Summary details of all 64 gene modules. Gene module rows are highlighted with different colors to reflect transcript abundance differences between red and white grapes for each module (red highlight for red grapes, green highlight for white grapes and yellow highlight for no distinction between red and white grapes) (XLSX 99Â kb).
DOI: 10.6084/m9.figshare.c.3791131_d3
title: Additional file 12: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Summary details of all 64 gene modules. Gene module rows are highlighted with different colors to reflect transcript abundance differences between red and white grapes for each module (red highlight for red grapes, green highlight for white grapes and yellow highlight for no distinction between red and white grapes) (XLSX 99Â kb).
DOI: 10.6084/m9.figshare.c.3791131_d4.v1
title: Additional file 13: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Annotations of the top 100 hub (kME) genes in the turquoise module. Highlight colors represent different GO categories assigned to each gene (XLSX 111Â kb).
DOI: 10.6084/m9.figshare.c.3791131_d4
title: Additional file 13: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Annotations of the top 100 hub (kME) genes in the turquoise module. Highlight colors represent different GO categories assigned to each gene (XLSX 111Â kb).
DOI: 10.6084/m9.figshare.c.3791131_d5.v1
title: Additional file 14: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Network statistics for the petal analysis on the filtered set of 15,092 genes. V1 ID is as in Additional file 3. The table includes all genes of the network model based on a Spearman correlation threshold of 0.703. Each geneâ  s cluster coefficient (localCC) and connectivity degree (k) are included (XLSX 423Â kb).
DOI: 10.6084/m9.figshare.c.3791131_d9.v1
title: Additional file 2: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Log2 counts per million of filtered and normalized read counts (XLSX 11815Â kb).
DOI: 10.6084/m9.figshare.c.3791155_d3
title: Additional file 3: of High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra

description: Q. rubra mapped markers and associated data. The table shows all of the mapped framework and SNP markers, the cM distances between them, marker category, position on the Q. rubra linkage group, the sequence in which the marker occurs and the genotypes for the 217 full-sib progeny used for mapping. (XLSX 890Â kb)
DOI: 10.6084/m9.figshare.c.3791131_d10.v1
title: Additional file 3: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Differential expression results from edgeR of the significantly affected transcripts in common from berry skins of seven grapevine cultivars at different °Brix levels. V1 ID refers to the transcript identification of the gene loci of the V1 version of the PN40024 Vitis vinifera reference genome. Cultivar abbreviations are Cabernet Sauvignon (CS), Merlot (ME), Pinot Noir (PN), Chardonnay (CD) and Semillon (SM). P-values and adjusted p-values (PAdj) were calculated for each of the comparisons between the different °Brix levels for each cultivar (XLSX 2391 kb).
DOI: 10.15468/dl.zy2kks
title: Occurrence Download

description: A dataset containing 2056 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aluterus scriptus (Osbeck, 1765)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 2056 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038738-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57754/fdat.jzzym-ewq17
title: Nominal aspectuality SUM

description: This data set comprises adjusted data from a rating study in which participants read single sentences on the screen and rate their acceptability on a scale from 1-7.
Acceptability judgement study on nominal aspectuality in Romances languages and Romance-based creole languages
description: Research carried out in work package C07 of the SFB 833.
DOI: 10.15468/dl.w9erqw
title: Occurrence Download

description: A dataset containing 222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amblyraja hyperborea (Collett, 1879)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 222 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038739-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3791131_d9
title: Additional file 2: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Log2 counts per million of filtered and normalized read counts (XLSX 11815Â kb).
DOI: 10.6084/m9.figshare.c.3791131_d10
title: Additional file 3: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Differential expression results from edgeR of the significantly affected transcripts in common from berry skins of seven grapevine cultivars at different °Brix levels. V1 ID refers to the transcript identification of the gene loci of the V1 version of the PN40024 Vitis vinifera reference genome. Cultivar abbreviations are Cabernet Sauvignon (CS), Merlot (ME), Pinot Noir (PN), Chardonnay (CD) and Semillon (SM). P-values and adjusted p-values (PAdj) were calculated for each of the comparisons between the different °Brix levels for each cultivar (XLSX 2391 kb).
DOI: 10.15468/dl.zdbrut
title: Occurrence Download

description: A dataset containing 5807 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amblyraja radiata (Donovan, 1808)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 5807 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038741-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3791131_d11
title: Additional file 4: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Annotation of the differentially expressed genes (DEGs) and count data associated with each gene. V1 ID is the same as in Additional file 3. AtID refers to Arabidopsis thaliana gene loci. Headings on the column refer to the cultivar abbreviation followed by the number of the replicate and the number of the °Brix level. The final columns compute the differences between °Brix levels for each cultivar and average them for all cultivars. Color highlights represent decreasing (green) or increasing (red) differences for the gene for the 26 to 20 °Brix comparison (26–20) (XLSX 3136 kb).
DOI: 10.6084/m9.figshare.c.3791161_d4.v1
title: MOESM3 of De novo assembly, functional annotation, and analysis of the giant reed (Arundo donax L.) leaf transcriptome provide tools for the development of a biofuel feedstock

description: Additional file 3: Table S1. Distribution of gene ontology (GO) terms among biological process, molecular functions and cellular components categories using Blast2GO.
DOI: 10.6084/m9.figshare.c.3791131_d12.v1
title: Additional file 5: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Statistical results from gene set enrichment analysis of the DEGs using BinGO (XLSX 271Â kb).
DOI: 10.6084/m9.figshare.c.3791131_d12
title: Additional file 5: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: Statistical results from gene set enrichment analysis of the DEGs using BinGO (XLSX 271Â kb).
DOI: 10.15468/dl.n2hmpn
title: Occurrence Download

description: A dataset containing 14845 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus iria L."
 ]
}

 The dataset includes 14845 records from 497 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038740-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3791161_d4
title: MOESM3 of De novo assembly, functional annotation, and analysis of the giant reed (Arundo donax L.) leaf transcriptome provide tools for the development of a biofuel feedstock

description: Additional file 3: Table S1. Distribution of gene ontology (GO) terms among biological process, molecular functions and cellular components categories using Blast2GO.
DOI: 10.6084/m9.figshare.c.3791161_d5.v1
title: MOESM4 of De novo assembly, functional annotation, and analysis of the giant reed (Arundo donax L.) leaf transcriptome provide tools for the development of a biofuel feedstock

description: Additional file 4: Table S2. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways analysis for A. donax leaf transcriptome.
DOI: 10.6084/m9.figshare.c.3791131_d14.v1
title: Additional file 7: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

description: BinGO analysis of the top 500 DEGs with a positive difference between 26 and 20° Brix (26–20) (XLSX 73 kb).
DOI: 10.6084/m9.figshare.c.3791161_d5
title: MOESM4 of De novo assembly, functional annotation, and analysis of the giant reed (Arundo donax L.) leaf transcriptome provide tools for the development of a biofuel feedstock

description: Additional file 4: Table S2. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways analysis for A. donax leaf transcriptome.
DOI: 10.17183/stations_mag_shom
title: Séries temporelles de mesures de l'intensité du champ magnétique terrestre à des stations déployées par le Shom

description: Le Shom déploie des stations de mesures en continue de l'intensité du champ magnétique terrestre. 
Les séries temporelles mesurées sont validées et principalement exploitées pour réduire les effets du champ magnétique externe sur les données acquises à la mer.
Les principales sources de données sont la Station Magnétique du Shom (SMS) et les stations EPOMAG (Equipement Ponctuel d'Observation du champ MAGnétique terrestre).
DOI: 10.6084/m9.figshare.c.3791164_d5.v1
title: Additional file 5: Table S5. of Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents

description: Genetic diversity indices of symbiont 16S rRNA gene from 45 individuals of host Bathymodiolus mussels in the EPR and PAR. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3791164_d4.v1
title: Additional file 4: Table S3. of Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents

description: Bacterial symbiont community in the gill tissues of host mussels, B. thermophilus and B. antarcticus, based on NGS data of 16S ribosomal RNA gene from 45 individual host mussels. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3791164_d5
title: Additional file 5: Table S5. of Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents

description: Genetic diversity indices of symbiont 16S rRNA gene from 45 individuals of host Bathymodiolus mussels in the EPR and PAR. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3791164_d4
title: Additional file 4: Table S3. of Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents

description: Bacterial symbiont community in the gill tissues of host mussels, B. thermophilus and B. antarcticus, based on NGS data of 16S ribosomal RNA gene from 45 individual host mussels. (XLSX 16Â kb)