cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21223/p3/f8igi9/iaeq0x
title: PTPV200907_CHAQUI_Exp2.xls

description: :unav
DOI: 10.21223/p3/f8igi9/kyllsf
title: PVS_ Documentation.pdf

description: :unav
DOI: 10.21223/p3/f8igi9/mfdged
title: PTPV200907_CHAQUI_Exp2.xls

description: :unav
DOI: 10.21223/p3/f8igi9/x04ypq
title: Data_dictionary.xlsx

description: :unav
DOI: 10.6084/m9.figshare.26989969.v1
title: Additional file 4 of DeepGAMI: deep biologically guided auxiliary learning for multimodal integration and imputation to improve genotype–phenotype prediction

description: Additional file 4. Prioritized bulk transcription factors to genes and SNPs to gene links for schizophrenia.
DOI: 10.6084/m9.figshare.26989945.v1
title: Additional file 12 of Meningioma animal models: a systematic review and meta-analysis

description: Additional file 12: Uncategorized full data extraction sheet.
DOI: 10.6084/m9.figshare.26989942.v1
title: Additional file 11 of Meningioma animal models: a systematic review and meta-analysis

description: Additional file 11: GEM full data extraction sheet.
DOI: 10.6084/m9.figshare.26989939.v1
title: Additional file 10 of Meningioma animal models: a systematic review and meta-analysis

description: Additional file 10: PTM full data extraction sheet.
DOI: 10.6084/m9.figshare.26989897.v1
title: Additional file 15 of Gene expression in notochord and nuclei pulposi: a study of gene families across the chordate phylum

description: Additional file 15: Supplemental file 3. Tmod protein sequences used in Fig. 3, with their respective accession numbers.
DOI: 10.6084/m9.figshare.26989888.v1
title: Additional file 12 of Gene expression in notochord and nuclei pulposi: a study of gene families across the chordate phylum

description: Additional file 12: Table S5. ENSEMBL gene models for the mouse genes in Fig. S7.
DOI: 10.6084/m9.figshare.26989885.v1
title: Additional file 11 of Gene expression in notochord and nuclei pulposi: a study of gene families across the chordate phylum

description: Additional file 11: Table S4. Mouse and human gene models and probe IDs.
DOI: 10.6084/m9.figshare.26989879.v1
title: Additional file 9 of Gene expression in notochord and nuclei pulposi: a study of gene families across the chordate phylum

description: Additional file 9: Table S2. Danio rerio gene models, ESTs and cloning primers.
DOI: 10.15468/dl.zqvtmd
title: Occurrence Download

description: A dataset containing 3123 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The dataset on terrestrial testate amoebae from forest-steppe ecotone (Middle Volga Territory, Russia) in 2004-2006"
 ]
}

 The dataset includes 3123 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011823-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26986744.v1
title: Additional file 15 of A translatome-transcriptome multi-omics gene regulatory network reveals the complicated functional landscape of maize

description: Additional file 15. Predicted sub-GRN likely occurred in endosperm.
DOI: 10.6084/m9.figshare.26986732.v1
title: Additional file 11 of A translatome-transcriptome multi-omics gene regulatory network reveals the complicated functional landscape of maize

description: Additional file 11: Table S10. Primer information used in the qRT-PCR.
DOI: 10.6084/m9.figshare.26986708.v1
title: Additional file 3 of A translatome-transcriptome multi-omics gene regulatory network reveals the complicated functional landscape of maize

description: Additional file 3: Table S2. Overlap between GRNs and CHIP-seq for single TF.
DOI: 10.6084/m9.figshare.26986417.v1
title: Additional file 7 of Conservation and divergence of canonical and non-canonical imprinting in murids

description: Additional file 7. Syntenic 1kb regions oocyte epigenetic profiling.
DOI: 10.15468/dl.z7ws8w
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Grewia rupestris Schinz",
 "Continent is Africa"
 ]
}

 The dataset includes 38 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011824-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26986414.v1
title: Additional file 6 of Conservation and divergence of canonical and non-canonical imprinting in murids

description: Additional file 6. Allele agnostic RNAseq.
DOI: 10.6084/m9.figshare.26986411.v1
title: Additional file 5 of Conservation and divergence of canonical and non-canonical imprinting in murids

description: Additional file 5. Allele specific RNAseq.
DOI: 10.6084/m9.figshare.26986405.v1
title: Additional file 3 of Conservation and divergence of canonical and non-canonical imprinting in murids

description: Additional file 3: Table S2. Rat and mouse differentially methylated regions.
DOI: 10.6084/m9.figshare.26986390.v1
title: Additional file 1 of Production of indigo by recombinant bacteria

description: Additional file 1. Publication: Production of indigo by recombinant bacteria. Additional file 1 Excel Spreadsheet 1. Mathematical Calculations.
DOI: 10.6084/m9.figshare.26986315.v1
title: Additional file 2 of Hologenome analysis reveals independent evolution to chemosymbiosis by deep-sea bivalves

description: Additional file 2: Table S1. Constitution of prokaryotes in the gill of C. bisecta based on 16S rDNA amplicon analysis. Table S3. Putative transproter genes in SCbi. Table S4. Genes in biosynthesis pathways of amino acids and cofactors. Table S11. The expansion and contraction events among the three symbiotic bivalves (Conchocele bisecta, Archivesica marissinica, Gigantidas platifrons). Table S12. Counts of pfam domains related to the glycosyl hydrolase families in bivalve genomes. Table S13. Number of Pfam protein families related to the PRRs that involved in bacterial recognition.
DOI: 10.6084/m9.figshare.26986012.v1
title: Additional file 2 of The Alzheimer’s disease-linked protease BACE1 modulates neuronal IL-6 signaling through shedding of the receptor gp130

description: Additional file 2: Supplementary Data 1. CSF proteomics of NHP treated with the BACE inhibitor MBI-4.
DOI: 10.21223/p3/3wapnu/1db0br
title: PVS_ documentation.pdf

description: :unav
DOI: 10.21223/p3/3wapnu/yf9tve
title: PTPV201210_PAMP_Exp2.xls

description: :unav
DOI: 10.21223/p3/3wapnu/8ao0fx
title: Data_dictionary.xlsx

description: :unav
DOI: 10.21223/p3/3wapnu/il1azp
title: PTPV201311_PAMP.xls

description: :unav
DOI: 10.21223/p3/3wapnu/mkbroz
title: PTPV201210_PAMP_Exp2.xls

description: :unav
DOI: 10.21223/p3/3wapnu/v4yiyc
title: PTPV201210_PAMP_Exp1.xls

description: :unav
DOI: 10.21223/p3/3wapnu/veluau
title: PTPV201311_PAMP.xls

description: :unav
DOI: 10.21223/p3/3wapnu/wdfgre
title: PTPV201210_PAMP_Exp1.xls

description: :unav
DOI: 10.6084/m9.figshare.26985982.v1
title: Additional file 17 of Investigation of autism-related transcription factors underlying sex differences in the effects of bisphenol A on transcriptome profiles and synaptogenesis in the offspring hippocampus

description: Additional file 17. Expression of estrogen receptors in pAR-overexpressing neuroblastoma SH-SY5Y cell line.
DOI: 10.6084/m9.figshare.26985958.v1
title: Additional file 9 of Investigation of autism-related transcription factors underlying sex differences in the effects of bisphenol A on transcriptome profiles and synaptogenesis in the offspring hippocampus

description: Additional file 9. Biological functions, disorders, and pathways associated with the transcriptional targets of KDM5B that were dysregulated in the male hippocampus predicted by IPA software. Statistical significance was determined using Fisher’s exact test. A p-value &lt; 0.05 was considered significant.
DOI: 10.6084/m9.figshare.26985952.v1
title: Additional file 7 of Investigation of autism-related transcription factors underlying sex differences in the effects of bisphenol A on transcriptome profiles and synaptogenesis in the offspring hippocampus

description: Additional file 7. Biological functions, disorders, and pathways associated with the transcriptional targets of EGR2 that were dysregulated in the female hippocampus predicted by IPA software. Statistical significance was determined using Fisher’s exact test. A p-value &lt; 0.05 was considered significant.
DOI: 10.6084/m9.figshare.26985931.v1
title: Additional file 3 of Control strategies used in lower limb exoskeletons for gait rehabilitation after brain injury: a systematic review and analysis of clinical effectiveness

description: Additional file 3. Relation between outcome metrics and control strategies for stroke.
DOI: 10.6084/m9.figshare.26985925.v1
title: Additional file 1 of Control strategies used in lower limb exoskeletons for gait rehabilitation after brain injury: a systematic review and analysis of clinical effectiveness

description: Additional file 1. Analysis of the studies included in the review.
DOI: 10.5281/zenodo.13749148
title: Zonificación de los incendios - febrero 2024 (SHP)

description: Shapefile (SHP) con la estimación del área afectada mediante una reclasificación del índice de áreas quemadas creado, utilizando LANDSAT 9 del 5 de febrero de 2024. Uso en Sistemas de Información Geográfica. Análisis a cargo de Malcom Bonet y Constanza Romero. Fecha de elaboración: Febrero 2024.

Revisar página 23 del informe CIGIDEN incendios para profundizar en aspectos metodológicos.
DOI: 10.5281/zenodo.13749149
title: Zonificación de los incendios - febrero 2024 (SHP)

description: Shapefile (SHP) con la estimación del área afectada mediante una reclasificación del índice de áreas quemadas creado, utilizando LANDSAT 9 del 5 de febrero de 2024. Uso en Sistemas de Información Geográfica. Análisis a cargo de Malcom Bonet y Constanza Romero. Fecha de elaboración: Febrero 2024.

Revisar página 23 del informe CIGIDEN incendios para profundizar en aspectos metodológicos.
DOI: 10.6084/m9.figshare.26985862.v1
title: Additional file 3 of Magnetic transferrin nanoparticles (MTNs) assay as a novel isolation approach for exosomal biomarkers in neurological diseases

description: Additional file 3: Supplementary Table S3. Normalized 550 protein abundances in 30 samples in three groups, dementia, Parkinson, and multiple scleroisis.
DOI: 10.15468/dl.d5e2hh
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Grewia schinzii K.Schum.",
 "Continent is Africa"
 ]
}

 The dataset includes 80 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011825-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21223/p3/xgkxge/cxv8yv
title: PTPV201311_SUYUB.xls

description: :unav
DOI: 10.21223/p3/xgkxge/wdqzdq
title: PTPV201211_SUYUB.xls

description: :unav
DOI: 10.21223/p3/xgkxge/gtvvwk
title: PTPV201311_SUYUB.xls

description: :unav
DOI: 10.21223/p3/xgkxge/mrlf41
title: Data_dictionary.xlsx

description: :unav
DOI: 10.21223/p3/xgkxge/nvihdj
title: PTPV201211_SUYUB.xls

description: :unav
DOI: 10.21223/p3/xgkxge/yyv4ur
title: PVS_ Documentation.pdf

description: :unav
DOI: 10.15468/dl.76kp8d
title: Occurrence Download

description: A dataset containing 53246 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "Year is greater than or equal to 1999",
 "TaxonKey is Eschscholzia californica Cham.",
 {
 "not" : {
 "DatasetKey" : [
 "is Pl@ntNet automatically identified occurrences"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 }
 ]
}

 The dataset includes 53246 records from 430 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011826-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26996958
title: Additional file 14 of Transcriptomic profiling reveals histone acetylation-regulated genes involved in somatic embryogenesis in Arabidopsis thaliana

description: Additional file 14: Table S4
DOI: 10.6084/m9.figshare.26996949
title: Additional file 11 of Transcriptomic profiling reveals histone acetylation-regulated genes involved in somatic embryogenesis in Arabidopsis thaliana

description: Additional file 11: Dataset S5
DOI: 10.6084/m9.figshare.26996934
title: Additional file 6 of Transcriptomic profiling reveals histone acetylation-regulated genes involved in somatic embryogenesis in Arabidopsis thaliana

description: Additional file 6: Dataset S2
DOI: 10.15468/dl.ncwx65
title: Occurrence Download

description: A dataset containing 141 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Colombia, Mexico, Brazil)",
 "PublishingOrg is one of (cccff716-2694-4209-9f9e-2f7a484465a0, 90fd6680-349f-11d8-aa2d-b8a03c50a862, 7b8aff00-a9f8-11d8-944b-b8a03c50a862)",
 "TaxonKey is Toxicodendron striatum (Ruiz & Pav.) Kuntze"
 ]
}

 The dataset includes 141 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011828-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26996904
title: Additional file 5 of Burden of rare genetic disorders in India: twenty-two years’ experience of a tertiary centre

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.26996859
title: Additional file 13 of Transcriptional and epigenetic characterization of a new in vitro platform to model the formation of human pharyngeal endoderm

description: Additional file 13. Supplementary table S7.
DOI: 10.6084/m9.figshare.26996829
title: Additional file 3 of Transcriptional and epigenetic characterization of a new in vitro platform to model the formation of human pharyngeal endoderm

description: Additional file 3. Supplementary table S2.
DOI: 10.6084/m9.figshare.26996811
title: Additional file 3 of Genetic diversity and signatures of selection in Icelandic horses and Exmoor ponies

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26994853
title: Additional file 17 of Analysis of 3760 hematologic malignancies reveals rare transcriptomic aberrations of driver genes

description: Additional file 17: Table S16. Associations identified between disease entities and genes.
DOI: 10.6084/m9.figshare.26994844
title: Additional file 14 of Analysis of 3760 hematologic malignancies reveals rare transcriptomic aberrations of driver genes

description: Additional file 14: Table S13. Prediction result of the hematologic malignancy driver gene prediction model using the complete dataset and seven IntOGen tools, OUTRIDER, NB-act, FRASER, AbSplice features.
DOI: 10.15468/dl.mstfgj
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Grewia suffruticosa K.Schum.",
 "Continent is Africa"
 ]
}

 The dataset includes 25 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011829-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26990044
title: Additional file 2 of Multi-scale characterisation of homologous recombination deficiency in breast cancer

description: Additional file 2: Supplementary Data Table S1. Mutational signature phenotype clustering of the ICGC breast cancer cohort. Table S2. HRD classification and signature phenotype assignment of the TCGA-BRCA cohort. Table S3. ANOVA analysis of hypoxia levels as a function of ER, BRCA-defect, and HRD status in the TCGA-BRCA cohort. Table S4. The 228-gene HRD signature with centroid templates for each group developed using the TCGA-BRCA training cohort. Table S5. The reduced 26-gene HRD signature with importance values calculated using a graph attention network. Table S6. HRD scores and PRISM values of PARP inhibitor sensitivity for 26 breast cancer cell lines obtained from the Cancer Cell Line Encyclopaedia.
DOI: 10.6084/m9.figshare.26989978
title: Additional file 7 of DeepGAMI: deep biologically guided auxiliary learning for multimodal integration and imputation to improve genotype–phenotype prediction

description: Additional file 7. Prioritized genes and electrophysiological features for cell cortical layers in mouse visual cortex.
DOI: 10.6084/m9.figshare.26989945
title: Additional file 12 of Meningioma animal models: a systematic review and meta-analysis

description: Additional file 12: Uncategorized full data extraction sheet.
DOI: 10.6084/m9.figshare.26989939
title: Additional file 10 of Meningioma animal models: a systematic review and meta-analysis

description: Additional file 10: PTM full data extraction sheet.
DOI: 10.6084/m9.figshare.26989936
title: Additional file 9 of Meningioma animal models: a systematic review and meta-analysis

description: Additional file 9: ECLM full data extraction sheet.
DOI: 10.6084/m9.figshare.26989897
title: Additional file 15 of Gene expression in notochord and nuclei pulposi: a study of gene families across the chordate phylum

description: Additional file 15: Supplemental file 3. Tmod protein sequences used in Fig. 3, with their respective accession numbers.
DOI: 10.6084/m9.figshare.26989891
title: Additional file 13 of Gene expression in notochord and nuclei pulposi: a study of gene families across the chordate phylum

description: Additional file 13: Supplemental file 1. Phip protein sequences used in Fig. S1, with their respective accession numbers.
DOI: 10.5066/p9alg8my
title: Counts of Birds in Aerial Photos from Fall Waterfowl Surveys, Izembek Lagoon, Alaska, 2017-2019

description: This dataset includes tables summarizing image information and bird counts from the aerial digital images taken over open water at Izembek Lagoon in Alaska in fall 2017-2019. These summaries list one record per image and provide the camera parameters, latitude, longitude, altitude, and automated and manual counts representing the total number of birds in each taxon (brant, white-cheeked geese, emperor geese, gulls, and other birds) identified in the image. The original images (.JPG format) and annotations are provided in an accompanying USGS data release (Weiser et al. 2022).
DOI: 10.6084/m9.figshare.26986585
title: Additional file 2 of Proteomic analysis of sialoliths from calcified, lipid and mixed groups as a source of potential biomarkers of deposit formation in the salivary glands

description: Additional file 2. Statistical analysis of data obtained from the SWATH-MS analysis for the studied sialoliths. The table contains pool samples and each analyzed stone with values such as: t-test value and p-value, q-value, medians, fold change and log2 fold change, which were used to type statistically significant changes in protein levels.
DOI: 10.6084/m9.figshare.26986426
title: Additional file 9 of Conservation and divergence of canonical and non-canonical imprinting in murids

description: Additional file 9. Rat 10kb bins epigenetic profiling.
DOI: 10.5281/zenodo.13322241
title: INSA soil image dataset

description: Camera description

1 RGB Camera

Images of each mixture are captured at a distance of ∼ 40cm from a Luxonis OAK-D Pro RGB camera under artificial (ambient) lighting. The camera hasthe following specifications:• Resolution: 12MP (4056x3040)• Frame rate: 60 FPS• Lens Size: 1/2.3 inch• 3 color channels Red+Green+Blue (RGB)

2 InfraRed Camera

To generate the image data under artificial (ambiant) lighting, an Aerial Map-ping Camera (MAPIR) is used which is a low-cost, high-resolution Near-InfraRed (NIR) camera capable of capturing multiple non-distorted images. Some specifications of the camera include:• Resolution: 4000x3000, JPG (24bit)• Shutter Speed: automatic• Lens: 19mm 87° HFOV, F2.8 Fixed Aperture (Survey3W)• Color channels NIR+Green+Blue (NGB)Distance of cameras from soil: ∼40cm

Soil description

The dataset contains:• 3 coarse soils: gravel, Hostun sand and Synthetic coarse sand. Different mixtures are realised with gravel/Hostun sand and gravel/Synthetic sand. Images are taken with the RGB camera.• 2 fine soils: Kaolin (white clay) and silt of Dieppe. The soils were mixed with water at different water content values, and images are taken with the RGB and the InfraRed camera.

 

Acknowledgment

The authors thank the Department of Civil Engineering and Urban Planning of INSA Lyon (GCU INSA Lyon) for the donation and preparation of soils.

This work was supported by ANR within the joint French-German project RE- MATCH ANR-21-FAI2-0009. We would like to express our sincere appreciation to them for their support.
DOI: 10.5281/zenodo.13322242
title: INSA soil image dataset

description: Camera description

1 RGB Camera

Images of each mixture are captured at a distance of ∼ 40cm from a Luxonis OAK-D Pro RGB camera under artificial (ambient) lighting. The camera hasthe following specifications:• Resolution: 12MP (4056x3040)• Frame rate: 60 FPS• Lens Size: 1/2.3 inch• 3 color channels Red+Green+Blue (RGB)

2 InfraRed Camera

To generate the image data under artificial (ambiant) lighting, an Aerial Map-ping Camera (MAPIR) is used which is a low-cost, high-resolution Near-InfraRed (NIR) camera capable of capturing multiple non-distorted images. Some specifications of the camera include:• Resolution: 4000x3000, JPG (24bit)• Shutter Speed: automatic• Lens: 19mm 87° HFOV, F2.8 Fixed Aperture (Survey3W)• Color channels NIR+Green+Blue (NGB)Distance of cameras from soil: ∼40cm

Soil description

The dataset contains:• 3 coarse soils: gravel, Hostun sand and Synthetic coarse sand. Different mixtures are realised with gravel/Hostun sand and gravel/Synthetic sand. Images are taken with the RGB camera.• 2 fine soils: Kaolin (white clay) and silt of Dieppe. The soils were mixed with water at different water content values, and images are taken with the RGB and the InfraRed camera.

 

Acknowledgment

The authors thank the Department of Civil Engineering and Urban Planning of INSA Lyon (GCU INSA Lyon) for the donation and preparation of soils.

This work was supported by ANR within the joint French-German project RE- MATCH ANR-21-FAI2-0009. We would like to express our sincere appreciation to them for their support.
DOI: 10.6084/m9.figshare.26986420
title: Additional file 8 of Conservation and divergence of canonical and non-canonical imprinting in murids

description: Additional file 8. Rat and mouse oocyte 1kb bin DNAme levels.
DOI: 10.6084/m9.figshare.26986402
title: Additional file 2 of Conservation and divergence of canonical and non-canonical imprinting in murids

description: Additional file 2: Table S1. Data displayed in figure panels.
DOI: 10.6084/m9.figshare.26986357
title: Additional file 2 of Systematic in vitro analysis of therapy resistance in glioblastoma cell lines by integration of clonogenic survival data with multi-level molecular data

description: Additional file 2. Compilation of all molecular data collected in this study.