cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21744180
title: Generalized height-diameter models with random effects for natural forests of central Mexico

description: ABSTRACT Background: Tree height is an important variable in forestry, as it is commonly used to estimate volume and biomass, and to evaluate site productivity. In this study, we developed four generalized equations to model height-diameter ( h-d) relationships for coniferous and broadleaf species. For this purpose, we used information from 49 permanent sampling plots located in the natural forests of Puebla, Mexico. Non-linear fixed and mixed-effects modeling approaches were used to fit generalized versions of the Gompertz function to Pinus patula and the Pinus group, the Näslund function to Abies religiosa, and the Curtis function to the Quercus group. Results: Stand variables included in the models were the number of trees per hectare ( N), quadratic mean diameter ( dg), and basal area per hectare ( G). The results showed a model efficiency (EF) = 0.91 and root mean square error (RMSE) = 2.04 for P. patula, as well as an EF = 0.91 and RMSE = 1.63 for the Pinus group. The EF and RMSE for Abies religiosa were 0.88 and 2.21, while for the Quercus group these values were 0.72 and 1.9, respectively. From the mixed-effects model calibration, only a sub-sample of three trees from different quantiles of the diameter distribution is required to make accurate predictions. No stand-level variables related to tree height are included in any of the selected models, thus no additional measurements beyond tree diameter are required. Conclusion: Compared to conventional non-linear least squares (ONLS), mixed-effects models are more flexible and accurate and represent a new tool for sustainable forest management of natural forests in the study area.
DOI: 10.6084/m9.figshare.21744180.v1
title: Generalized height-diameter models with random effects for natural forests of central Mexico

description: ABSTRACT Background: Tree height is an important variable in forestry, as it is commonly used to estimate volume and biomass, and to evaluate site productivity. In this study, we developed four generalized equations to model height-diameter ( h-d) relationships for coniferous and broadleaf species. For this purpose, we used information from 49 permanent sampling plots located in the natural forests of Puebla, Mexico. Non-linear fixed and mixed-effects modeling approaches were used to fit generalized versions of the Gompertz function to Pinus patula and the Pinus group, the Näslund function to Abies religiosa, and the Curtis function to the Quercus group. Results: Stand variables included in the models were the number of trees per hectare ( N), quadratic mean diameter ( dg), and basal area per hectare ( G). The results showed a model efficiency (EF) = 0.91 and root mean square error (RMSE) = 2.04 for P. patula, as well as an EF = 0.91 and RMSE = 1.63 for the Pinus group. The EF and RMSE for Abies religiosa were 0.88 and 2.21, while for the Quercus group these values were 0.72 and 1.9, respectively. From the mixed-effects model calibration, only a sub-sample of three trees from different quantiles of the diameter distribution is required to make accurate predictions. No stand-level variables related to tree height are included in any of the selected models, thus no additional measurements beyond tree diameter are required. Conclusion: Compared to conventional non-linear least squares (ONLS), mixed-effects models are more flexible and accurate and represent a new tool for sustainable forest management of natural forests in the study area.
DOI: 10.6084/m9.figshare.21744182
title: Kinematic measures of swallowing obtained with ultrasound: a scoping review protocol

description: ABSTRACT Purpose: to identify and synthesize scientific evidence on kinematic measures of swallowing obtained with ultrasound. Methods: a protocol following the methodology proposed by the Joanna Briggs Institute and the Preferred Reporting Items for Systematic Reviews and Meta-Analysis Protocols - extension for scoping reviews (PRISMA-ScR). The search will be made in PubMed/MEDLINE, Scopus, Web of Science, LILACS, ScienceDirect, Embase, and Google Scholar, using a search strategy developed for PubMed/MEDLINE, which will be adapted for each database. Articles will be initially screened by title and abstract by two independent reviewers who will read their full text according to the eligibility criteria. Data in included articles will be extracted by means of a standardized form and the results presented in a flowchart and narrative summary. Final Considerations: once carried out, this protocol will present the state-of-the-art on the research topic and help better understand the possibilities to quantitatively analyze swallowing through ultrasound.
DOI: 10.6084/m9.figshare.21744182.v1
title: Kinematic measures of swallowing obtained with ultrasound: a scoping review protocol

description: ABSTRACT Purpose: to identify and synthesize scientific evidence on kinematic measures of swallowing obtained with ultrasound. Methods: a protocol following the methodology proposed by the Joanna Briggs Institute and the Preferred Reporting Items for Systematic Reviews and Meta-Analysis Protocols - extension for scoping reviews (PRISMA-ScR). The search will be made in PubMed/MEDLINE, Scopus, Web of Science, LILACS, ScienceDirect, Embase, and Google Scholar, using a search strategy developed for PubMed/MEDLINE, which will be adapted for each database. Articles will be initially screened by title and abstract by two independent reviewers who will read their full text according to the eligibility criteria. Data in included articles will be extracted by means of a standardized form and the results presented in a flowchart and narrative summary. Final Considerations: once carried out, this protocol will present the state-of-the-art on the research topic and help better understand the possibilities to quantitatively analyze swallowing through ultrasound.
DOI: 10.6084/m9.figshare.21744183
title: Two Leishmania species separation targeting the ITS-rDNA and Cyt b genes by developing and evaluating HRM- qPCR

description: ABSTRACT Background: Incidence of Cutaneous Leishmaniasis as an infectious and neglected disease is increasing, for the diagnosis of which several traditional methods and conventional PCR techniques have been developed, employing different genes for species identification. Methods: Leishmania parasites were sampled, DNA was extracted, and new specific and sensitive primers were designed. Two ITS-rDNA and Cyt b genes were targeted by qPCR using the High- Resolution Melting method to identify Leishmania parasites. The standard curves were drawn, compared, and identified by high-resolution melting curve analysis. Results: Melting temperature and Cycle of Threshold of ITS-rDNA was higher than Cyt b but Cyt b was more sensitive than ITS-rDNA when Leishmania major and Leishmania tropica were analyzed and evaluated. By aligning melt curves, normalizing fluorescence curves, and difference plotting melt curves, each Leishmania species was distinguished easily. L. major and L. tropica were separated at 83.6 °C and 84.7 °C, respectively, with less than 0.9 °C of temperature difference. Developing sensitivity and specificity of real-time PCR based on EvaGreen could detect DNA concentration to less than one pmol. Conclusions: Precise identification of Leishmania parasites is crucial for strategies of disease control. Real-time PCR using EvaGreen provides rapid, highly sensitive, and specific detection of parasite’s DNA. The modified High-Resolution Melting could determine unique curves and was able to detect single nucleotide polymorphisms according to small differences in the nucleotide content of Leishmania parasites.
DOI: 10.6084/m9.figshare.21744183.v1
title: Two Leishmania species separation targeting the ITS-rDNA and Cyt b genes by developing and evaluating HRM- qPCR

description: ABSTRACT Background: Incidence of Cutaneous Leishmaniasis as an infectious and neglected disease is increasing, for the diagnosis of which several traditional methods and conventional PCR techniques have been developed, employing different genes for species identification. Methods: Leishmania parasites were sampled, DNA was extracted, and new specific and sensitive primers were designed. Two ITS-rDNA and Cyt b genes were targeted by qPCR using the High- Resolution Melting method to identify Leishmania parasites. The standard curves were drawn, compared, and identified by high-resolution melting curve analysis. Results: Melting temperature and Cycle of Threshold of ITS-rDNA was higher than Cyt b but Cyt b was more sensitive than ITS-rDNA when Leishmania major and Leishmania tropica were analyzed and evaluated. By aligning melt curves, normalizing fluorescence curves, and difference plotting melt curves, each Leishmania species was distinguished easily. L. major and L. tropica were separated at 83.6 °C and 84.7 °C, respectively, with less than 0.9 °C of temperature difference. Developing sensitivity and specificity of real-time PCR based on EvaGreen could detect DNA concentration to less than one pmol. Conclusions: Precise identification of Leishmania parasites is crucial for strategies of disease control. Real-time PCR using EvaGreen provides rapid, highly sensitive, and specific detection of parasite’s DNA. The modified High-Resolution Melting could determine unique curves and was able to detect single nucleotide polymorphisms according to small differences in the nucleotide content of Leishmania parasites.
DOI: 10.6084/m9.figshare.21744189
title: Do bird communities of neotropical monodominant forests have their own identity? The case of Eremanthus erythropappus forests

description: ABSTRACT Background: Monodominant Eremanthus erythropappus forests are dispersed in neotropical montane regions of southeastern and northeastern Brazil, forming ecotonal areas among other high altitude phytophysiognomies, with no information from their fauna communities and how these communities vary between phytophysiognomies adjacent. We examined the bird community of three preserved and three managed E. erythropappus forests, and compared them two other coexisting phytophysiognomies (cloud forests and montane fields), being three samples of each, in an ecotonal region between two biodiversity hotspot domains (Cerrado and Atlantic Forest), in southeastern Brazil (1300 to 1570m high). Results: The bird community of the natural E. erythropappus forests was shared with other vegetation, while the managed E. erythropappus forests presented the lowest species richness. However, even though managed E. erythropappus forests has almost no exclusive elements, their community caused a balanced variation (a set of very similar species, only changing the representativeness), suggesting that the abundance of the registered species varies along these phytophysiognomies. Conclusion: The species associated with the natural E. erythropappus forests represented 50% of the total species, in contrast to the remaining 50% associated with the areas of cloud forests and montane fields, and their sharing behaves as an ecotonal community, since its community coincides with elements which are also present in the avifauna of the other two sampled phytophysiognomies. The composition of the avifauna from managed E. erythropappus forests was more similar to the community registered in the montane fields.
DOI: 10.6084/m9.figshare.21744189.v1
title: Do bird communities of neotropical monodominant forests have their own identity? The case of Eremanthus erythropappus forests

description: ABSTRACT Background: Monodominant Eremanthus erythropappus forests are dispersed in neotropical montane regions of southeastern and northeastern Brazil, forming ecotonal areas among other high altitude phytophysiognomies, with no information from their fauna communities and how these communities vary between phytophysiognomies adjacent. We examined the bird community of three preserved and three managed E. erythropappus forests, and compared them two other coexisting phytophysiognomies (cloud forests and montane fields), being three samples of each, in an ecotonal region between two biodiversity hotspot domains (Cerrado and Atlantic Forest), in southeastern Brazil (1300 to 1570m high). Results: The bird community of the natural E. erythropappus forests was shared with other vegetation, while the managed E. erythropappus forests presented the lowest species richness. However, even though managed E. erythropappus forests has almost no exclusive elements, their community caused a balanced variation (a set of very similar species, only changing the representativeness), suggesting that the abundance of the registered species varies along these phytophysiognomies. Conclusion: The species associated with the natural E. erythropappus forests represented 50% of the total species, in contrast to the remaining 50% associated with the areas of cloud forests and montane fields, and their sharing behaves as an ecotonal community, since its community coincides with elements which are also present in the avifauna of the other two sampled phytophysiognomies. The composition of the avifauna from managed E. erythropappus forests was more similar to the community registered in the montane fields.
DOI: 10.6084/m9.figshare.21744191
title: APPLICATION OF VEGETATION INDEXES TO ASSESS CARBON STOCK

description: Abstract This was objectively conducted to estimate the carbon stock, to show the relation between carbon stock and indices and to assess the factors affecting carbon stock in community forests. Three community forests (CFs) namely Gumalchowki, Mahakalsthan and Mahalaxmi of Chandragiri Municipality in Nepal were selected as research sites. Altogether 135 plots were randomly established to collect data from the field. The diameter at breast height and height of the trees were measured in the sample plot. The biomass was calculated using Chave et al., equation which was converted into carbon stock multiplying by default value 0.47. The values of Normalized Difference Vegetation Index (NDVI), Difference Vegetation Index (DVI) and Infrared Percentage Vegetation Index (IPVI) were calculated and regression equation between the indices and carbon stock was performed. The result showed that total above ground carbon stock was highest in Mahalaxmi CF with 30.42 ton/ha, followed by Mahakalsthan CF with 22.62 ton/ha and comparatively lowest with 21.55 ton/ha in Gumalchowki CF. The regression analysis between carbon stock and indices showed significantly and positive correlation. The R2 value of NDVI of Gumalchowki, Mahakalsthan and Mahalaxmi CF were found to be 0.51, 0.54 and 0.58, also, RMSE value of CFs were 1.41, 1.36 and 1.91 respectively. Principal componenet analysis showed that road construction, transmission line expansion, soil erosion, encroachment, disease, weeds, recreation, illegal logging are the major factors affecting carbon stock in all three community forests. This study will be useful to show the correlation between indices and carbon stock.
DOI: 10.6084/m9.figshare.21744191.v1
title: APPLICATION OF VEGETATION INDEXES TO ASSESS CARBON STOCK

description: Abstract This was objectively conducted to estimate the carbon stock, to show the relation between carbon stock and indices and to assess the factors affecting carbon stock in community forests. Three community forests (CFs) namely Gumalchowki, Mahakalsthan and Mahalaxmi of Chandragiri Municipality in Nepal were selected as research sites. Altogether 135 plots were randomly established to collect data from the field. The diameter at breast height and height of the trees were measured in the sample plot. The biomass was calculated using Chave et al., equation which was converted into carbon stock multiplying by default value 0.47. The values of Normalized Difference Vegetation Index (NDVI), Difference Vegetation Index (DVI) and Infrared Percentage Vegetation Index (IPVI) were calculated and regression equation between the indices and carbon stock was performed. The result showed that total above ground carbon stock was highest in Mahalaxmi CF with 30.42 ton/ha, followed by Mahakalsthan CF with 22.62 ton/ha and comparatively lowest with 21.55 ton/ha in Gumalchowki CF. The regression analysis between carbon stock and indices showed significantly and positive correlation. The R2 value of NDVI of Gumalchowki, Mahakalsthan and Mahalaxmi CF were found to be 0.51, 0.54 and 0.58, also, RMSE value of CFs were 1.41, 1.36 and 1.91 respectively. Principal componenet analysis showed that road construction, transmission line expansion, soil erosion, encroachment, disease, weeds, recreation, illegal logging are the major factors affecting carbon stock in all three community forests. This study will be useful to show the correlation between indices and carbon stock.
DOI: 10.6084/m9.figshare.7512197
title: Utility of the Neuropsychiatric Inventory Questionnaire (NPI-Q) in the assessment of a sample of patients with Alzheimer's disease in Chile

description: ABSTRACT The Neuropsychiatric Inventory Questionnaire (NPI-Q) is an informant-based instrument that measures the presence and severity of 12 Neuropsychiatric Symptoms (NPS) in patients with dementia, as well as informant distress. Objective: To measure the psychometric properties of the NPI-Q and the prevalence of NPS in patients with Alzheimer's disease (AD) in Chile. Methods: 53 patients with AD were assessed. Subjects were divided into two different groups: mild AD (n=26) and moderate AD (n=27). Convergent validity was estimated by correlating the outcomes of the NPI-Q with Neuropsychiatric Inventory (NPI) scores and with a global cognitive efficiency test (Addenbrooke's Cognitive Examination - Revised - ACE-R). Reliability of the NPI-Q was analysed by calculating its internal consistency. Prevalence of NPS was estimated with both the NPI and NPI-Q. Results: Positive and significant correlations were observed between the NPI-Q, the NPI, and the ACE-R (r=0.730; p&lt;0.01 and 0.315; p&lt;0.05 respectively). The instrument displayed an adequate level of reliability (Cronbach's alpha=0.783). The most prevalent NPS were apathy/indifference (62.3%) and dysphoria/depression (58.5%). Conclusion: The NPI-Q exhibited acceptable validity and reliability indicators for patients with AD in Chile, indicating that it is a suitable instrument for the routine assessment of NPS in clinical practice.
DOI: 10.6084/m9.figshare.7512197.v1
title: Utility of the Neuropsychiatric Inventory Questionnaire (NPI-Q) in the assessment of a sample of patients with Alzheimer's disease in Chile

description: ABSTRACT The Neuropsychiatric Inventory Questionnaire (NPI-Q) is an informant-based instrument that measures the presence and severity of 12 Neuropsychiatric Symptoms (NPS) in patients with dementia, as well as informant distress. Objective: To measure the psychometric properties of the NPI-Q and the prevalence of NPS in patients with Alzheimer's disease (AD) in Chile. Methods: 53 patients with AD were assessed. Subjects were divided into two different groups: mild AD (n=26) and moderate AD (n=27). Convergent validity was estimated by correlating the outcomes of the NPI-Q with Neuropsychiatric Inventory (NPI) scores and with a global cognitive efficiency test (Addenbrooke's Cognitive Examination - Revised - ACE-R). Reliability of the NPI-Q was analysed by calculating its internal consistency. Prevalence of NPS was estimated with both the NPI and NPI-Q. Results: Positive and significant correlations were observed between the NPI-Q, the NPI, and the ACE-R (r=0.730; p&lt;0.01 and 0.315; p&lt;0.05 respectively). The instrument displayed an adequate level of reliability (Cronbach's alpha=0.783). The most prevalent NPS were apathy/indifference (62.3%) and dysphoria/depression (58.5%). Conclusion: The NPI-Q exhibited acceptable validity and reliability indicators for patients with AD in Chile, indicating that it is a suitable instrument for the routine assessment of NPS in clinical practice.
DOI: 10.6084/m9.figshare.21744200
title: Psychometric properties of the short version of the Five Facets of Mindfulness Questionnaire in Brazilian Portuguese

description: Abstract The aims of the current study were to evaluate the psychometric properties of a short version of the Five Facet Mindfulness Questionnaire (FFMQ-SF-BR) and verify if the addition of wording mechanisms (positive or negative) contributes to the fit of the shortened Brazilian Portuguese version of the FFMQ. Four hundred eight participants answered self-report measurements. Structural equation modelling was employed for both objectives. Adequate model fit was found for the 5-factor FFMQ-SF-BR model, with significant improvements arising from the addition of wording mechanism effects. No evidences of differential item functioning and population heterogeneity were found. Bifactor analysis showed that latent traces are preferred overusing raw sum scores. The FFMQ-SF-BR is suitable to measure mindfulness in the Brazilian population and has the benefits of decreasing data collection length without losing content coverage.
DOI: 10.6084/m9.figshare.21744200.v1
title: Psychometric properties of the short version of the Five Facets of Mindfulness Questionnaire in Brazilian Portuguese

description: Abstract The aims of the current study were to evaluate the psychometric properties of a short version of the Five Facet Mindfulness Questionnaire (FFMQ-SF-BR) and verify if the addition of wording mechanisms (positive or negative) contributes to the fit of the shortened Brazilian Portuguese version of the FFMQ. Four hundred eight participants answered self-report measurements. Structural equation modelling was employed for both objectives. Adequate model fit was found for the 5-factor FFMQ-SF-BR model, with significant improvements arising from the addition of wording mechanism effects. No evidences of differential item functioning and population heterogeneity were found. Bifactor analysis showed that latent traces are preferred overusing raw sum scores. The FFMQ-SF-BR is suitable to measure mindfulness in the Brazilian population and has the benefits of decreasing data collection length without losing content coverage.
DOI: 10.6084/m9.figshare.21744201
title: List of sentences in Portuguese: speech perception evaluation in children

description: ABSTRACT Purpose: to develop lists of sentences in Brazilian Portuguese based on daily vocabulary to evaluate auditory speech perception in children. Methods: a Brazilian Portuguese corpus with adaptations to attend the criteria established for this study and analyzed by judges was used to obtain the sentences. Thirty-seven lists, each composed of thirteen sentences with fifty phonological keywords, were constructed. The material was presented to ten children, aged between 6 and 10 years, with no hearing or communication complaints. The Friedman test was applied to verify possible differences among the lists. The level of significance adopted was 5% (0.05). Results: the mean speech recognition index presented by the participants was 96.8% for all lists. The thirty-seven lists were considered statistically similar (p=0.140). Conclusion: the developed material proved to contain sentences that represent situations of children’s day-to-day communication and its application is easy and quick.