cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.pk8hp/2
title: data for multiple site beta diversity
DOI: 10.5061/dryad.qb357/1
title: Data for Namukonde et al. 2018 Biotropica
DOI: 10.5061/dryad.rb86d/3
title: expanded_Supplementary data

description: Supplementary file of empirical data and simulation results
DOI: 10.5061/dryad.rh4qm/2
title: Acronyms of riparian species and riparian guilds

description: The file "Acronyms_Species_Guilds.csv" contain the acronyms (Acronyms) of all the species used in the study, the scientific name and classifier (Species), the Family and the Guilds assignment to all species used in the study.
DOI: 10.5061/dryad.rj10c/1
title: Data colonies

description: Raw data supporting the information presented in Figure 1.
DOI: 10.5061/dryad.rj10c/2
title: Data individuals

description: Raw data supporting the information presented in Figures 2 and 3
DOI: 10.5061/dryad.rj10c/3
title: Data pharmaco

description: Raw data supporting the information presented in Figure 4
DOI: 10.5061/dryad.1pk42/2
title: Density

description: Raw data from the varying parasite density (constant volume, variable parasite number) experiment. Cerc_Density is the number of R. ondatrae cercariae added. ID is the unique tadpole number. Stage is Gosner stage of the tadpole. Meta is number of metacercariae recovered. Mass is final wet mass of tadpole. SVL is snout vent length of the tadpole at the end of the experiment. TL is total length of the tadpole at the end of the experiment.
DOI: 10.5061/dryad.1pk42/3
title: Host_Density_Combined

description: Raw data from the varying host density (constant volume, variable host number) experiment. Cerc_Number is the number of R. ondatrae cercariae added. Meta _Number is the number of metacercariae recovered. Mass is final wet mass of tadpole. Host_Number is the number of tadpoles in the experimental replicate.
DOI: 10.5061/dryad.1pk42/4
title: Karvonen1

description: Raw data from Karvonen et al. 2003 using rainbow trout Oncorhynchus mykiss and Diplostomum spathaceum varying parasite density. Cerc is number of parasites added. Meta is the number of metacercariae. Time is the duration of exposure in minutes. Volume is the size of the experimental area in liters.
DOI: 10.5061/dryad.1pk42/5
title: Karvonen2

description: Raw data from Karvonen et al. 2003 using rainbow trout Oncorhynchus mykiss and Diplostomum spathaceum varying parasite number. Cerc is number of parasites added. Metacerc is the number of metacercariae. Time is the duration of exposure in minutes. Volume is the size of the experimental area in liters.
DOI: 10.5061/dryad.1pk42/6
title: Paller1

description: Raw data from Paller et al. 2003 using minnows Zacco temmincki and Centrocestus armatus varying parasite density. Cerc is number of parasites added. Metacerc is the number of metacercariae. Time is the duration of exposure in minutes. Volume is the size of the experimental area in liters.
DOI: 10.5061/dryad.1pk42/7
title: Paller2

description: Raw data from Paller et al. 2003 using minnows Zacco temmincki and Centrocestus armatus varying parasite number.Cerc is number of parasites added. Metacerc is the number of metacercariae. Time is the duration of exposure in minutes. Volume is the size of the experimental area in liters.
DOI: 10.5061/dryad.2m916/1
title: Raw data for tetracycline treatment

description: Number of male and female adults appeared following tetracycline treatment.
DOI: 10.5061/dryad.2m916/2
title: Raw data for egg hatch rates

description: Egg hatch rates of all-female and normal lines.
DOI: 10.5061/dryad.37s4h/4
title: Phylogenetic trees

description: Phylogenetic trees of birds were obtained from BirdTree (https://birdtree.org/), and used to calculate the phylogenetic indexes. The birdtree.org website accompanies the following studies: Jetz W, Thomas GH, Joy JB, Hartmann K, Mooers AO (2012) The global diversity of birds in space and time. Nature 491: 444-448. http://dx.doi.org/10.1038/nature11631, and Jetz W, Thomas GH, Joy JB, Hartmann K, Redding D, Mooers AO (2014) Distribution and conservation of global evolutionary distinctness in birds. Current Biology 24: 1-12. http://dx.doi.org/10.1016/j.cub.2014.03.011.
DOI: 10.5061/dryad.3d00d/1
title: MiLES16 dataset

description: The MiLES16 database is a dataset of 15 root, leaf and plant functional traits compiled from our own experiment in 2016. Data are provided for 39 accessions from 3 sub-species of Triticum turgidum. It contains a copy of the main data files used for this paper, as well as a description of the studied variables (see below).
DOI: 10.5061/dryad.3kn78/1
title: Dryad msat file
DOI: 10.5061/dryad.4b5n5/1
title: Code and data for Aramillo Irizar et al. (2017)

description: Source code and data for reproducing the analyses reported in the paper.
DOI: 10.5061/dryad.4t85s/1
title: Survival of coral recruits at all combinations of temperature (26 and 30°C) and deposited sediment concentration (30, 60, 90 and 120 mg/cm2) using natural sediment

description: Data set arranged for survival analysis: Temperature (Celsius), Sediment (deposited natural sediment mg/cm2), Time (Weeks), Status (1- dead, 0 - alive).
DOI: 10.5061/dryad.4t85s/2
title: Survival of coral recruits at all combinations of temperature (26 and 30°C) and deposited sediment concentration (30, 60, 90 and 120 mg/cm2) using anthropogenic sediment

description: Data set arranged for survival analysis: Temperature (Celsius), Sediment (deposited natural sediment mg/cm2), Time (Weeks), Status (1- dead, 0 - alive).
DOI: 10.5061/dryad.5637n/1
title: Zip file containing data files and R script

description: This zip file contains all data files and a R script for the production of all analyses and figures presented in Witman & Lamb 2017: "Persistent differences between coastal and offshore kelp forest communities in a warming Gulf of Maine"
DOI: 10.5061/dryad.5ds70/1
title: Aphid data

description: Accession, collection and sequence data for the aphids associated with this publication. Data http://dx.doi.org/10.5883/DS-ASAPH
DOI: 10.5061/dryad.5ds70/2
title: Plant data associated with this manuscript.

description: Accession, collection and sequence data for the plant species used in this manuscript.  Public data originally derived from https://dx.doi.org/10.1186%2F1472-6785-12-25
DOI: 10.5061/dryad.5ds70/3
title: Plant tree (all) Mar 11

description: To create a phylogeny of locally occurring plants in Churchill, we used the existing DNA barcode library derived from the majority of the vascular plants of Churchill (Kuzmina et al. 2012) (Supp. Appendix 1). Each plant species targeted in our study had three DNA barcode gene regions (ITS2, rbcLa, and matK; Hollingsworth et al. 2009) represented with the exception of Larix laricina, which lacked a matK sequence. For each plant species, and each gene region, the highest quality sequence (longest sequence containing the lowest number of ambiguous bases) was selected. The three genes were concatenated using FaBox (Villesen 2007), and the resulting contiguous sequence was used to create a Maximum-Likelihood tree (500 bootstrap replicates) in MEGA6.
DOI: 10.5061/dryad.5ds70/4
title: aphid tree 1000 bootstrap GTR tree consensus
DOI: 10.5061/dryad.6r273/1
title: Marascoetal

description: Spreadsheet "Breed_surv": reproductive performance and survival data; Spreadsheet "cort": corticosterone monitoring data
DOI: 10.5061/dryad.84mh3/1
title: Gladbachus Complete Specimen

description: Braincase, jaws, gill arches, pectoral girdle and associated scales as preserved. File format .stl.
DOI: 10.5061/dryad.84mh3/2
title: Gladbachus Gill Skeleton

description: Reconstructed hyoid arch and gill arches. File format .stl.
DOI: 10.5061/dryad.84mh3/3
title: Gladbachus matrix

description: Nexus file for phylogenetic analysis.
DOI: 10.5061/dryad.bs387/1
title: pathogen_data

description: Data used for analysis and visualisation of infection rate, virulence, and spore production.
DOI: 10.5061/dryad.bs387/2
title: survival_data_10

description: Data used for analysis and visualisation of survival curves and hazard ratios for the day 10 treatment. Included are the aged-matched control cohorts. Age-matched control cohorts were created by filtering control survival data to animals which lived at least 14 days after each exposure age as this is the earliest point in which infection status can be accurately diagnosed.
DOI: 10.5061/dryad.bs387/3
title: survival_data_20

description: Data used for analysis and visualisation of survival curves and hazard ratios for the day 20 treatment. Included are the aged-matched control cohorts. Age-matched control cohorts were created by filtering control survival data to animals which lived at least 14 days after each exposure age as this is the earliest point in which infection status can be accurately diagnosed.
DOI: 10.5061/dryad.bs387/4
title: survival_data_30

description: Data used for analysis and visualisation of survival curves and hazard ratios for the day 30 treatment. Included are the aged-matched control cohorts. Age-matched control cohorts were created by filtering control survival data to animals which lived at least 14 days after each exposure age as this is the earliest point in which infection status can be accurately diagnosed.
DOI: 10.5061/dryad.bs387/5
title: survival_data_40

description: Data used for analysis and visualisation of survival curves and hazard ratios for the day 40 treatment. Included are the aged-matched control cohorts. Age-matched control cohorts were created by filtering control survival data to animals which lived at least 14 days after each exposure age as this is the earliest point in which infection status can be accurately diagnosed.
DOI: 10.5061/dryad.d851q/5
title: matsVarCov

description: RData including MPMs for 109 species with information on vital-rate correlations
DOI: 10.5061/dryad.d8ts9.2
title: Data from: Environmental variation partitioned into separate heritable components
DOI: 10.5061/dryad.d8ts9.2/1.2
title: Supporting Table S1

description: Line mean, standard error and number of replicates per trait for all DGRP lines
DOI: 10.5061/dryad.d8ts9.2/2.2
title: Supporting Table S4

description: Top SNPs associated with V(plast), V(v.plast), V(WE), and V(AE)
DOI: 10.5061/dryad.fn208/1
title: data for Dryad

description: detection data, site covariates, sampling covariates
DOI: 10.5061/dryad.jf7np/1
title: phylogenetic information

description: - align.fasta  = alignment
- align.models = gene regions
- align_w_shtest.tre = maximum likelihood tree with SH-like test listed
- align_w_shtest_treepl_3samp.tre = maximum likelihood tree with divergence time estimation and 3 minimum samples
- raxml_fasttree_sh_boot_all.tre = bootstrap tree set with SH-like test with divergence time estimation
DOI: 10.5061/dryad.jf7np/2
title: climate information

description: bioclimatic climate data for each species
DOI: 10.5061/dryad.kd1d4/54
title: CHELSA_bio10_5_land
DOI: 10.5061/dryad.kd1d4/55
title: CHELSA_bio10_6_land
DOI: 10.5061/dryad.kd1d4/56
title: CHELSA_bio10_7_land
DOI: 10.5061/dryad.kd1d4/57
title: CHELSA_bio10_8_land
DOI: 10.5061/dryad.kd1d4/58
title: CHELSA_bio10_9_land
DOI: 10.5061/dryad.kd1d4/59
title: CHELSA_bio10_10_land
DOI: 10.5061/dryad.kd1d4/60
title: CHELSA_bio10_11_land
DOI: 10.5061/dryad.kd1d4/61
title: CHELSA_bio10_12_land
DOI: 10.5061/dryad.mq56q/1
title: Anderson.et.al.Ecology.model1.LRR.script

description: R script to execute the analysis of covariance on the log response ratio of total plant nutrients in fertilized and unfertilized treatments across 20 grassland sites (model 1).
DOI: 10.5061/dryad.mq56q/2
title: Anderson.et.al.Ecology.model2.SEM.script

description: R script to execute the hierarchical structural equation model (model 2) using a piece-wise approach. The model analyzes direct and indirect effects of climate, herbivory and nutrient supply on total plant nutrient responses (the sum of N, P and K) at multiple spatial scales by combining site- and plot-level predictors in a multi-level structural equation model.
DOI: 10.5061/dryad.mq56q/3
title: Model1.LRR.data

description: Data file required to run model 1. Data included in the file are the site ID, the treatment (fenced or unfenced), mean annual precipitation in mm yr-1 (MAP), average annual temperature in oC (MAT), solar insolation in KWh m-2 day-1 (SOLAR.INS), total soil %N (SOIL.PCT.N), and the log ratio of the total nutrient content in fertilized/total nutrient content in control for carbon (LRR.C), nitrogen (LRR.N), phosphorus (LRR.P) and potassium (LRR.K).
DOI: 10.5061/dryad.mq56q/4
title: Model2.SEM.plot.data

description: Data file required to run model 2 at the plot level. Data included in the file are a row number, site ID, the treatment (2 x 2 NPK fertilizer by fencing), an indicator variable for fence (FENCE), an indicator variable for fertilization (NPK.ADDED), mean annual precipitation in mm yr-1 (MAP), average annual temperature in oC (MAT), solar insolation in KWh m-2 day-1 (SOLAR.INS), atmospheric nitrogen deposition in kg ha-1 yr-1(N.DEPOSITION), a grazing index, total soil %N (SOIL.PCT.N), total aboveground plant biomass in g m-2 (TOTAL.AG.BIOMASS), the percent of biomass that is grass (PERCENT.GRASS.BIOMASS) and the concentration of NPK (plant.NPK), nitrogen (plant.N), phosphorus (plant.P) and potassium (plant.K) in plant tissue.
DOI: 10.5061/dryad.mq56q/5
title: Model2.SEM.site.data

description: Data file required to run model 2 at the site level. Data included in the file are the site ID, average annual temperature in oC (MAT), mean annual precipitation in mm yr-1 (MAP), solar insolation in KWh m-2 day-1 (SOLAR.INS), atmospheric nitrogen deposition in kg ha-1 yr-1(N.DEPOSITION), a grazing index and the percent of biomass that is grass (PERCENT.GRASS.BIOMASS).
DOI: 10.5061/dryad.p63q0/1
title: Bhattacharjee et al_JEB_Raw data_Control

description: Raw data for the control for one time exposure
DOI: 10.5061/dryad.p63q0/2
title: Bhattacharjee et al_JEB_Raw data_Test

description: Raw data for the one time test
DOI: 10.5061/dryad.p63q0/3
title: Bhattacharjee et al_JEB_Raw data_Additional food reward
DOI: 10.5061/dryad.p63q0/4
title: Bhattacharjee et al_JEB_Raw data_Social food reward
DOI: 10.5061/dryad.rb86d/4
title: residual_simulation_expanded

description: Simulations R script
DOI: 10.5061/dryad.sb029/1
title: fruitset

description: To determine the effects of herbivory on fruit set, we experimentally manipulated damage on 39 pairs of plants. On one plant in each pair we selected and bagged two branches with inflorescences at the bud stage that were at approximately the same size, phenological stage, and height on the plant. One of the branches received herbivore damage where one individual of Z. selenesii was placed inside the bag for three days to consume the leaves. In order to prevent the grasshopper from eating the inflorescence, the inflorescence was covered with a second bag during the three days the herbivore was feeding. The damaged branch was subsequently used to measure locally-induced responses to herbivory. The second branch of the same shrub was bagged in the same manner but received no damage and was used to measure systemically-induced responses to herbivory. The second plant in each pair served as an absolute control in which a single branch that was approximately the same size and height was bagged in the same way without placing any herbivore on the plant. After the three-day herbivore treatments, we removed the grasshoppers and the bags and allowed natural pollinator visitation to the inflorescences. We counted the total number of flowers that were aborted and the number that successfully set fruit. The first column (replica) show the number of the replica.  The second column shows the treatment of the branch. The third column shows the number of fruit that was developed in the branch. the fourth column shows the number of flowers in the branch. the fifth column shows the fruit set (proportion of flowers that becomes in fruits).
DOI: 10.5061/dryad.sb029/2
title: morphology

description: To establish if foliar herbivory causes changes in floral morphology and rewards that could alter floral visitation, we selected another 30 pairs of plants (15 pin and 15 thrum) of P. angustifolia. On each pair, we selected branches with inflorescences at the bud stage to serve as locally-induced, systemically-induced, and control branches and applied grasshopper herbivory treatments as described above. After 3 days, grasshoppers and bags were removed and once the flowers opened we took measurements of corolla length, anther length, style length, and distance from anthers to stigma for one flower randomly chosen from each inflorescence. The first column shows the number of the group of plants (bloque), the second column shows the treatment: L, local induction with Z. selenesii; S systemic induction and C, control. The third column shows the Morph of the branch T for Thrum and P for Pin. columns 4 to 7 show the length of different structures in the flower (Corola, anteras (anthers), estilo (Style) and distancia anteras-estigma(distance anthers-stigma)).
DOI: 10.5061/dryad.sb029/3
title: nectar

description: To establish if foliar herbivory causes changes in floral rewards that could alter floral visitation, we selected another 30 pairs of plants (15 pin and 15 thrum) of P. angustifolia. On each pair, we selected branches with inflorescences at the bud stage to serve as locally-induced, systemically-induced, and control branches and applied grasshopper herbivory treatments as described above. After 3 days, grasshoppers and bags were removed. From a subset of the same inflorescences (5 pin and 6 thrum), we also collected nectar on one randomly chosen flower. Nectar volume was measured using 2µL microcapillary pipettes (Drummond Scientific Company, Broomall, PA). The sugar concentration was estimated using a handheld refractometer (Reichert Digital Brix/RI-Chek). Due to low nectar volumes, all samples were diluted in 0.1 mL distilled water prior to taking concentration measurements. The concentration of the floral nectar was then calculated as the measured solution concentration multiplied by the ratio of the final solution volume to the collected nectar volume. The first column shows the flower morph: pin (P) and thrum (T). The second column is the volume in microliters of nectar present in the flower. The third column is the concentration of the nectar in each flower. The fourth column is the treatment of each branch: C control, S systemic induction and L local induction. The fifth column is the block of each pair of plants.
DOI: 10.5061/dryad.sb029/4
title: totalvisits_summed

description: To determine if foliar herbivory affected pollinator visitation, we monitored pollinator visits to 26 pairs of plants from the experiment described above. Plant pairs used for the observations were always located within approximately 2 m of each other to allow simultaneous pollinator observations. On each pair of plants, we recorded floral visitors in a series of one to three separate 30-minute continuous observations conducted after the removal of grasshoppers from the leaves. Just prior to each observation, we counted the number of open flowers on inflorescences from each of the three branches. The locally-induced, systemically induced, and control branches from a single plant pair were then observed simultaneously to record the identity of the floral visitors and the number of flowers visited by each individual visitor. The first column shows the name of the pollinator. the second column is the number for each couple of plants. the third column is the treatment of each branch: L local herbivory, S systemic herbivory, and C control. The fourth column is the number of visits of each pollinator. the fifth column is the number of individuals that made that visit and the sixth column is the average of opened flowers at the moment of the observation.
DOI: 10.5061/dryad.sf211.2
title: Data from: Induced parental care in a poison frog: a tadpole cross-fostering experiment
DOI: 10.5061/dryad.sf211.2/1.2
title: Spreadsheet: Tracking data of tadpole group frogs

description: Tracking points spreadsheet of tadpole group frogs
DOI: 10.5061/dryad.sf211.2/2.2
title: Spreadsheet: Tracking data of jelly group frogs

description: Tracking points spreadsheet of tadpole group frogs
DOI: 10.5061/dryad.sf211.2/3.2
title: Spreadsheet: deposition site locations

description: Deposition sites locations in the study area
DOI: 10.5061/dryad.sf211.2/4.2
title: GIS shapefile: tadpole group points

description: GIS shapefile of tadpole group frog points
DOI: 10.5061/dryad.sf211.2/5.2
title: GIS shapefile: tadpole group lines

description: GIS shapefile of tadpole group frog trajectory lines
DOI: 10.5061/dryad.sf211.2/6.2
title: GIS shapefile: jelly group points

description: GIS shapefile of jelly group frog points
DOI: 10.5061/dryad.sh1p2/1
title: Prior&Palmer 2017_Ecology data

description: Data: 1) short-term experiment (post-treatment), 2) surveys, 3) long-term experiment - growth, number of scale insects (pre to post-treatment), vertebrate herbivory, and ant counts (final experiment date post-treatment)
DOI: 10.5061/dryad.t39g3/1
title: exp_2a_13C_15N_harvest_and_t0_macroinvertebrates

description: See first tab for information
DOI: 10.5061/dryad.t39g3/2
title: exp_2a_biomass_t0_macroinvertebrates

description: See first tab for information
DOI: 10.5061/dryad.t39g3/3
title: exp_2a_survival_and_biomass_harvest_macroinvertebrates

description: See first tab for information
DOI: 10.5061/dryad.t39g3/4
title: exp_2b_13C_15N_part1_harvest_and_t0_macroinvertebrates

description: See first tab for information
DOI: 10.5061/dryad.v1kq6/1
title: hazdat

description: Part 1 - Overall event hazard data, delimited with pipes
DOI: 10.5061/dryad.v1kq6/2
title: endptdat

description: Part 2 - data for multinomial partitioning when an end point occurs with prior prediction probabilities to account for uncertainty, data are pipe delimited.
DOI: 10.5061/dryad.v5tn2/1
title: Data for Rcode

description: Contains the standardised data for the models
DOI: 10.17632/7byg297ptn.1
title: Data for: HEPATOBILIARY INVOLVEMENT IN SYSTEMIC SCLEROSIS AND THE CUTANEOUS SUBSETS. CHARACTERISTICS AND SURVIVAL OF PATIENTS FROM THE SPANISH RESCLE REGISTRY
DOI: 10.17632/nt3zcprmpp.1
title: Data for: The challenge of characterising food waste at a national level – an Australian example

description: The following document provides supporting information for the methodology of the paper and detailed results.
DOI: 10.17632/nt3zcprmpp.2
title: Data for: The challenge of characterising food waste at a national level – an Australian example

description: The following document provides supporting information for the methodology of the paper and detailed results.
DOI: 10.17632/t47ty4745g.1
title: Data for: Adsorption of mixtures of the Yukawa-ions near a hard wall: A density functional study based on the third-order Ornstein-Zernike relation
DOI: 10.17632/x8rcd7cpny.1
title: Data for: Development and Evaluation of Road Vehicle Emission Inventory for Fortaleza Metropolitan Area, Brazil

description: Appendix B. Supplementary data All FE data is available in an excel file.
DOI: 10.5061/dryad.1pk42/1
title: Behavior Volume2

description: Raw data from the host behavior experiment. Number is the number of R. ondatrae cercariae added. Meta is number of metacercariae recovered. Mass is final wet mass of tadpole. SVL is snout vent length of the tadpole at the end of the experiment. Total Length is total length of the tadpole at the end of the experiment. Volume is the size of the arena in liters.
DOI: 10.5061/dryad.1pk42/13
title: Makefile

description: File that allows all the R-code to be run together to create figures, tables, and generate all results.
DOI: 10.5061/dryad.1pk42/14
title: README

description: General description of how to use the makefile to recreate the analysis using R code.
DOI: 10.5061/dryad.1pk42/15
title: main

description: Main R script to run the analysis