cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/brmlg9
title: WorldFish G20 GIFT Growth line family production

description: These are the families produced for Generation 20 of the WorldFish GIFT tilapia growth line. The growth line is the unique line identifier within the breeding program.
description: Type: Dataset; Sub-type(s): Experimental data
DOI: 10.23729/fd-d0f0dedb-1e92-35b0-b1e4-da3e58435ea4
title: OpenFOAM tutorial case setups for FickianTransportFoam library

description: Dataset contains meshes and steady-state instantaneous fields for combustion tutorial cases, which are published in
https://github.com/Aalto-CFD/DLBFoam-Hydrogen-Tutorials
DOI: 10.15468/dl.8e8jqz
title: Occurrence Download

description: A dataset containing 536 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "GadmGid is one of (GBR.1.13_1, GBR.1.36_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus robur",
 "Year 2020-2025"
 ]
}

 The dataset includes 536 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054402-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17432054
title: Data Repository: Ischemia-Reperfusion AKI Signatures from GEO GSE126805 and GSE90865

description: # Ischemia-Reperfusion Induced Acute Kidney Injury (IRl AKl) Data Repository

This repository contains the processed data files derived from the study of Ischemia-Reperfusion Induced Acute Kidney Injury (IRl AKl) using the GEO datasets GSE126805 and GSE90865. The data has been meticulously processed and organized to facilitate further analysis and research by the scientific community.

## Dataset Description

### GEO Datasets- **GSE126805**: This dataset comprises gene expression profiles from patients with acute kidney injury under ischemia-reperfusion conditions.- **GSE90865**: This dataset includes gene expression data related to the immune response in ischemia-reperfusion injury.

### Processed DataThe processed data includes:- **1-GEO**: Contains scripts and outputs for downloading and preprocessing the original GEO datasets.- **2-Difference**: Files related to differential expression analysis.- **3-Compare**: Data comparison results between different conditions or groups.- **4-GOKEGG**: Results from Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis.- **5-model**: Model files and outputs from predictive modeling based on the identified signatures.- **6-nomogram**: Nomogram files for clinical prediction models.- **7-CIBERSORT-disease**: Application of CIBERSORT algorithm to infer immune cell infiltration.

## Usage

These processed data files are intended for researchers interested in exploring the molecular and immunological aspects of ischemia-reperfusion injury in acute kidney injury. The data can be used to validate existing models, develop new hypotheses, or integrate with other datasets for comprehensive analysis.

## Dependencies

For full utilization of the data, the following tools and libraries are recommended:- **R**: For statistical analysis and data manipulation.- **Python**: For additional data processing and visualization.- **CIBERSORT**: For deconvolution of immune cell populations.

## License

The data in this repository is licensed under the [Creative Commons Attribution 4.0 International License](https://creativecommons.org/licenses/by/4.0/). You are free to share and adapt the material, but must give appropriate credit, provide a link to the license, and indicate if changes were made.
DOI: 10.5281/zenodo.17432055
title: Data Repository: Ischemia-Reperfusion AKI Signatures from GEO GSE126805 and GSE90865

description: # Ischemia-Reperfusion Induced Acute Kidney Injury (IRl AKl) Data Repository

This repository contains the processed data files derived from the study of Ischemia-Reperfusion Induced Acute Kidney Injury (IRl AKl) using the GEO datasets GSE126805 and GSE90865. The data has been meticulously processed and organized to facilitate further analysis and research by the scientific community.

## Dataset Description

### GEO Datasets- **GSE126805**: This dataset comprises gene expression profiles from patients with acute kidney injury under ischemia-reperfusion conditions.- **GSE90865**: This dataset includes gene expression data related to the immune response in ischemia-reperfusion injury.

### Processed DataThe processed data includes:- **1-GEO**: Contains scripts and outputs for downloading and preprocessing the original GEO datasets.- **2-Difference**: Files related to differential expression analysis.- **3-Compare**: Data comparison results between different conditions or groups.- **4-GOKEGG**: Results from Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis.- **5-model**: Model files and outputs from predictive modeling based on the identified signatures.- **6-nomogram**: Nomogram files for clinical prediction models.- **7-CIBERSORT-disease**: Application of CIBERSORT algorithm to infer immune cell infiltration.

## Usage

These processed data files are intended for researchers interested in exploring the molecular and immunological aspects of ischemia-reperfusion injury in acute kidney injury. The data can be used to validate existing models, develop new hypotheses, or integrate with other datasets for comprehensive analysis.

## Dependencies

For full utilization of the data, the following tools and libraries are recommended:- **R**: For statistical analysis and data manipulation.- **Python**: For additional data processing and visualization.- **CIBERSORT**: For deconvolution of immune cell populations.

## License

The data in this repository is licensed under the [Creative Commons Attribution 4.0 International License](https://creativecommons.org/licenses/by/4.0/). You are free to share and adapt the material, but must give appropriate credit, provide a link to the license, and indicate if changes were made.
DOI: 10.15468/dl.3rsxmv
title: Occurrence Download

description: A dataset containing 561 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "GadmGid is one of (GBR.1.13_1, GBR.1.36_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pipistrellus pipistrellus",
 "Year 2020-2025"
 ]
}

 The dataset includes 561 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054404-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13485893
title: Full TMDB Movies Dataset 2024 (1M Movies)
DOI: 10.15468/dl.akn447
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Artemisia kuschakewiczii"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054405-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.82214/6an6-r625
title: MOLOCH–PALM Modeling System – PALM-4U Implementation over Bologna
DOI: 10.6084/m9.figshare.30436888
title: <b>The complete chloroplast genome sequence and phylogenetic position of</b><b> </b><b>Causonis japonica</b><b> (Thunb.) Raf. (Vitaceae)</b>

description: Causonis japonica (Thunb.) Raf. (Vitaceae), the type species of the genus Causonis, holds notable medicinal and systematic value. In this study, we present the complete chloroplast genome of C. japonica (158,414 bp), which exhibits the conserved four-part structure typical of angiosperms—comprising a large single-copy (LSC, 87,629 bp) region, a small single-copy (SSC, 19,101 bp) region, and two inverted repeats (IRa/IRb, 25,842 bp each). The plastome contains 139 annotated genes, including 92 protein-coding genes, 39 tRNA genes, and 8 rRNA genes, with an overall GC proportion of 37%. Among these, 11 genes possess introns (9 single-intron genes, and clpP1 and pafI each with two). The rps12 gene is trans-spliced across three exons, and the inverted repeat segments replicate 8 protein-coding genes, 3 tRNAs, and 4 rRNAs. Phylogenomic inference based on complete chloroplast sequences of Vitaceae confirms C. japonica as an independent evolutionary lineage, distinct from Cissus and Tetrastigma, thereby offering robust molecular evidence for the evolutionary separation and taxonomic integrity of Causonis.
DOI: 10.6084/m9.figshare.30436888.v1
title: <b>The complete chloroplast genome sequence and phylogenetic position of</b><b> </b><b>Causonis japonica</b><b> (Thunb.) Raf. (Vitaceae)</b>

description: Causonis japonica (Thunb.) Raf. (Vitaceae), the type species of the genus Causonis, holds notable medicinal and systematic value. In this study, we present the complete chloroplast genome of C. japonica (158,414 bp), which exhibits the conserved four-part structure typical of angiosperms—comprising a large single-copy (LSC, 87,629 bp) region, a small single-copy (SSC, 19,101 bp) region, and two inverted repeats (IRa/IRb, 25,842 bp each). The plastome contains 139 annotated genes, including 92 protein-coding genes, 39 tRNA genes, and 8 rRNA genes, with an overall GC proportion of 37%. Among these, 11 genes possess introns (9 single-intron genes, and clpP1 and pafI each with two). The rps12 gene is trans-spliced across three exons, and the inverted repeat segments replicate 8 protein-coding genes, 3 tRNAs, and 4 rRNAs. Phylogenomic inference based on complete chloroplast sequences of Vitaceae confirms C. japonica as an independent evolutionary lineage, distinct from Cissus and Tetrastigma, thereby offering robust molecular evidence for the evolutionary separation and taxonomic integrity of Causonis.
DOI: 10.15468/dl.ynw52d
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Linaria longicalcarata"
 ]
}

 The dataset includes 17 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054406-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqjzfg
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Poa palustris"
 ]
}

 The dataset includes 21 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054407-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.62trxv
title: Occurrence Download

description: A dataset containing 195 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moellendorffia"
 ]
}

 The dataset includes 195 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054409-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfqand
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Papaver rhoeas"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054411-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrby6r
title: Occurrence Download

description: A dataset containing 13698 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "GadmGid is one of (GBR.1.13_1, GBR.1.36_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Sciurus carolinensis",
 "Year 2020-2025"
 ]
}

 The dataset includes 13698 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054410-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.catzgn
title: Occurrence Download

description: A dataset containing 244504 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "OccurrenceStatus is Present",
 "TaxonKey is Grus grus"
 ]
}

 The dataset includes 244504 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054383-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22008/fk2/f2yyev
title: Supplementary Data File for Early to Middle Miocene in the North Sea Basin: proxy-based insights into environment, depositional settings and sea surface temperature evolution

description: Supplementary material consists of 7 sheets: 1. Raw counts: Palynofacies counts and the P/D index - the Sønder Vium well 2. Relative abundance of palynofacies - the Sønder Vium well 3. Raw counts: dinoflagellate cysts (in situ and reworked) - the Sønder Vium well 4. Raw counts: Palynofacies counts and the P/D index - the 2/11-12S well 5. Relative abundance of palynofacies - the 2/11-12S well 6. Raw counts: dinoflagellate cysts (in situ and reworked) - the 2/11-12S well 7. GDGT analysis - the 2/11-12S well
DOI: 10.22008/fk2/f2yyev/1dxjyt
title: Supplementary Data File_jm-2024-26.xlsx

description: :unav
DOI: 10.15468/dl.k49vt2
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Seriphidium issykkulense"
 ]
}

 The dataset includes 23 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054412-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc4j3pf
title: CCDC 134654: Experimental Crystal Structure Determination

description: Related Article: Xue-Yi Le, Xiao-Hua Zhou, Kai-Bei Yu, Liang-Nian Ji|2000|Chin.J.Chem.|18|638|doi:10.1002/cjoc.20000180435
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc6535m
title: CCDC 183649: Experimental Crystal Structure Determination

description: Related Article: Ming De Shan, Li Hong Hu, Zhong Liang Chen|2001|Nat.Prod.Lett.|15|139|doi:10.1080/10575630108041271
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc6nyb3
title: CCDC 198875: Experimental Crystal Structure Determination

description: Related Article: S.L.Shea, J.Bould, M.G.S.Londesborough, S.D.Perera, A.Franken, D.L.Ormsby, T.Jelinek, B.Stibr, J.Holub, C.A.Kilner, M.Thornton-Pett, J.D.Kennedy|2003|Pure Appl.Chem.|75|1239|doi:10.1351/pac200375091239
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc70t78
title: CCDC 209319: Experimental Crystal Structure Determination

description: Related Article: M.K.Marchewka, M.Drozd, A.Pietraszko|2003|Mater.Sci.Eng.,B|100|225|doi:10.1016/S0921-5107(03)00108-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccx6lj6
title: CCDC 840488: Experimental Crystal Structure Determination

description: Related Article: M.Mathiselvam, B.Varghese, D.Loganathan|2011|Glycoconjugate J.|28|573|doi:10.1007/s10719-011-9357-y
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccx6lk7
title: CCDC 840489: Experimental Crystal Structure Determination

description: Related Article: M.Mathiselvam, B.Varghese, D.Loganathan|2011|Glycoconjugate J.|28|573|doi:10.1007/s10719-011-9357-y
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.17429834
title: Fast and Spurious: Developer Productivity with GenAI
DOI: 10.5281/zenodo.17430688
title: Fast and Spurious: Developer Productivity with GenAI
DOI: 10.15468/dl.uwzxan
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Stellaria crassifolia"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054413-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17415351
title: Publications related to AI, ML, and NLP within Medicine and Biology_OpenAlex

description: This dataset contains a set of publications retrieved from October 2024 OpenAlex snapshot that are associated with the top-level concepts “Medicine” and “Biology”. From this subset, we selected works additionally categorized under “Artificial Intelligence”, “Machine Learning”, or “Natural Language Processing”.

Each record includes the following metadata fields:

DOI – Digital Object Identifier of the publication

PMID – PubMed identifier (when available)

Year – Year of publication

Countries – Countries of the authors’ affiliations

concepts_AI-ML-NLP_L1 – Level-1 OpenAlex concept IDs, names, and confidence scores related to AI, ML, or NLP

concepts_children_L2 – Level-2 OpenAlex sub-concepts with corresponding IDs, names, and confidence scores

The dataset represents a structured sample for mapping the intersection of AI/ML/NLP research with biomedical and Life Sciences domains.
DOI: 10.5281/zenodo.17415352
title: Publications related to AI, ML, and NLP within Medicine and Biology_OpenAlex

description: This dataset contains a set of publications retrieved from October 2024 OpenAlex snapshot that are associated with the top-level concepts “Medicine” and “Biology”. From this subset, we selected works additionally categorized under “Artificial Intelligence”, “Machine Learning”, or “Natural Language Processing”.

Each record includes the following metadata fields:

DOI – Digital Object Identifier of the publication

PMID – PubMed identifier (when available)

Year – Year of publication

Countries – Countries of the authors’ affiliations

concepts_AI-ML-NLP_L1 – Level-1 OpenAlex concept IDs, names, and confidence scores related to AI, ML, or NLP

concepts_children_L2 – Level-2 OpenAlex sub-concepts with corresponding IDs, names, and confidence scores

The dataset represents a structured sample for mapping the intersection of AI/ML/NLP research with biomedical and Life Sciences domains.
DOI: 10.15468/dl.jzqszu
title: Occurrence Download

description: A dataset containing 118021 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Isoetes"
 ]
}

 The dataset includes 118021 records from 1060 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054356-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive6832.20251217.10
title: Leuconostoc pseudomesenteroides Farrow et al. 1989

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6833.20250331.9.3
title: Leuconostoc pseudomesenteroides Farrow et al. 1989

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0074879.10fu
title: SH0074879.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive6833.20251217.10
title: Leuconostoc pseudomesenteroides Farrow et al. 1989

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6834.20241212.9.2
title: Leuconostoc fallax Martinez-Murcia and Collins 1992

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.