cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26993149.v1
title: Additional file 1 of Transcriptome-wide association studies associated with Crohn’s disease: challenges and perspectives

description: Additional file 1. The list of susceptibility genes in various tissue types screened out by different TWAS methods.
DOI: 10.6084/m9.figshare.26993152.v1
title: Additional file 2 of Transcriptome-wide association studies associated with Crohn’s disease: challenges and perspectives

description: Additional file 2. All susceptibility genes associated with CD in various tissue types screened by TWAS.
DOI: 10.6084/m9.figshare.26993155.v1
title: Additional file 3 of Transcriptome-wide association studies associated with Crohn’s disease: challenges and perspectives

description: Additional file 3. The total significant results of GO functional analyses.
DOI: 10.6084/m9.figshare.26993179
title: Additional file 2 of Transcriptomic meta-analysis to identify potential antifungal targets in Candida albicans

description: Supplementary Material 2. Additional Table .xlsx contains DESeq2 detailed results
DOI: 10.6084/m9.figshare.26993179.v1
title: Additional file 2 of Transcriptomic meta-analysis to identify potential antifungal targets in Candida albicans

description: Supplementary Material 2. Additional Table .xlsx contains DESeq2 detailed results
DOI: 10.6084/m9.figshare.26993182
title: Additional file 3 of Transcriptomic meta-analysis to identify potential antifungal targets in Candida albicans

description: Supplementary Material 3. Additional Table .xlsx contains the complete target gene lists and their frequency in the selected GO clusters
DOI: 10.6084/m9.figshare.26993107
title: Additional file 2 of Data release: targeted systematic literature search for tick and tick-borne pathogen distributions in six countries in sub-Saharan Africa from 1901 to 2020

description: Additional file 2: Dataset S1. Excel sheet of all articles and data.
DOI: 10.6084/m9.figshare.26993176
title: Additional file 1 of Transcriptomic meta-analysis to identify potential antifungal targets in Candida albicans

description: Supplementary Material 1. Additional Table .xlsx contains detailed samples information
DOI: 10.6084/m9.figshare.26993152
title: Additional file 2 of Transcriptome-wide association studies associated with Crohn’s disease: challenges and perspectives

description: Additional file 2. All susceptibility genes associated with CD in various tissue types screened by TWAS.
DOI: 10.34740/kaggle/dsv/9367733
title: BBC Burmese News rss
DOI: 10.6084/m9.figshare.26993062
title: Additional file 1 of Genome-wide identification and characterization of flowering genes in Citrus sinensis (L.) Osbeck: a comparison among C. Medica L., C. Reticulata Blanco, C. Grandis (L.) Osbeck and C. Clementina

description: Additional file 1: Table S1. List of primers used in RT-PCR analysis. Table S2. Location of CREs on various flowering genes in sweet orange. Table S3. GO annotation of flowering genes in sweet orange. Table S4. Gene function analysis of flowering genes in sweet orange. Table S5. String clustering of the flowering related proteins in sweet orange. Table S6. K-mean clustering of the flowering related proteins in sweet orange. Table S7. rkpdm values of flowering genes expressed in different tissues of different citrus species. Fig. S1. Melt curve of the genes (a) CsFT (b) CsCO (c) CsSOC (d) CsAP (e) CsSEP (f) CsLFY.
DOI: 10.6084/m9.figshare.26993182.v1
title: Additional file 3 of Transcriptomic meta-analysis to identify potential antifungal targets in Candida albicans

description: Supplementary Material 3. Additional Table .xlsx contains the complete target gene lists and their frequency in the selected GO clusters
DOI: 10.6084/m9.figshare.26993062.v1
title: Additional file 1 of Genome-wide identification and characterization of flowering genes in Citrus sinensis (L.) Osbeck: a comparison among C. Medica L., C. Reticulata Blanco, C. Grandis (L.) Osbeck and C. Clementina

description: Additional file 1: Table S1. List of primers used in RT-PCR analysis. Table S2. Location of CREs on various flowering genes in sweet orange. Table S3. GO annotation of flowering genes in sweet orange. Table S4. Gene function analysis of flowering genes in sweet orange. Table S5. String clustering of the flowering related proteins in sweet orange. Table S6. K-mean clustering of the flowering related proteins in sweet orange. Table S7. rkpdm values of flowering genes expressed in different tissues of different citrus species. Fig. S1. Melt curve of the genes (a) CsFT (b) CsCO (c) CsSOC (d) CsAP (e) CsSEP (f) CsLFY.
DOI: 10.6084/m9.figshare.26993203
title: Additional file 2 of ThermomiR-377-3p-induced suppression of Cirbp expression is required for effective elimination of cancer cells and cancer stem-like cells by hyperthermia

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26993203.v1
title: Additional file 2 of ThermomiR-377-3p-induced suppression of Cirbp expression is required for effective elimination of cancer cells and cancer stem-like cells by hyperthermia

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26993113
title: Additional file 1 of The role of mesolevel characteristics of the health care system and socioeconomic factors on health care use – results of a scoping review

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.26993101.v1
title: Additional file 2 of Genome-wide detection of positive and balancing signatures of selection shared by four domesticated rainbow trout populations (Oncorhynchus mykiss)

description: Additional file 2: Table S1. Shared signatures of selection between the French lines (LB, LC and SY) and the American pooled population (HA) detected by the XP-EHH statistics. Table S2. List of ROH islands for the LB population. Table S3. List of ROH islands for the LC population. Table S4. List of ROH islands for the SY population. Table S5. List of ROH islands for the HA population. Table S6. List of significant signatures of selection identified by iHS for the LB population. Table S7. List of significant signals of selection identified by iHS for the LC population. Table S8. List of significant signals of selection identified by iHS for the SY population. Table S9. List of significant signals of selection identified by iHS for the HA population. Table S10. iHS and ROH values per population within the nine overlapping regions detected among the four populations. Table S11. List of the 253 genes included in the nine shared genomic regions. In bold, genes identified as linked to domestication in the literature. Table S12. List and functions of the 17 genes annotated in the three homozygous regions (chr2_a, chr2_c and chr15_a) shared by the four rainbow trout populations, and the 15 genes in the six other regions previously identified in the literature as signatures of selection [159, 166–183]. Table S13. List of the heterozygous regions (i.e., large regions without ROH) for the LB population. Table S14. List of the heterozygous regions (i.e., large regions without ROH) for the LC population. Table S15. List of the heterozygous regions (i.e., large regions without ROH) for the SY population. Table S16. List of the heterozygous regions (i.e., large regions without ROH) for the HA population. Table S17. List of the 29 genes included in the four heterozygous genomic regions. Table S18. Percentage of protein homology between rainbow trout and nine other vertebrate species for the genes annotated in the heterozygous chr10_a, chr13_a, chr19_a and chr19_b regions.
DOI: 10.6084/m9.figshare.26993233
title: Additional file 2 of Genome-wide profiling of histone (H3) lysine 4 (K4) tri-methylation (me3) under drought, heat, and combined stresses in switchgrass

description: Additional file 2: Supplemental Table 2. ChIP-Seq analysis of differentially marked histone H3K4me3 peaks in response to DT and DTHT.
DOI: 10.6084/m9.figshare.26993236
title: Additional file 3 of Genome-wide profiling of histone (H3) lysine 4 (K4) tri-methylation (me3) under drought, heat, and combined stresses in switchgrass

description: Additional file 3: Supplemental Table 3. Average number of H3K4me3 peaks in DT and DTHT-treated samples.
DOI: 10.6084/m9.figshare.26993107.v1
title: Additional file 2 of Data release: targeted systematic literature search for tick and tick-borne pathogen distributions in six countries in sub-Saharan Africa from 1901 to 2020

description: Additional file 2: Dataset S1. Excel sheet of all articles and data.
DOI: 10.6084/m9.figshare.26993113.v1
title: Additional file 1 of The role of mesolevel characteristics of the health care system and socioeconomic factors on health care use – results of a scoping review

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.26993239.v1
title: Additional file 4 of Genome-wide profiling of histone (H3) lysine 4 (K4) tri-methylation (me3) under drought, heat, and combined stresses in switchgrass

description: Additional file 4: Supplemental Table 4. Reads per million (RPM) of the differential peaks identified between DT vs Ctrl, DTHT vs Ctrl, and DTHT vs DT.
DOI: 10.6084/m9.figshare.26993230
title: Additional file 1 of Genome-wide profiling of histone (H3) lysine 4 (K4) tri-methylation (me3) under drought, heat, and combined stresses in switchgrass

description: Additional file 1: Supplemental Table 1. List of primers selected for real-time quantitative PCR (q-RT-PCR) from ChIP-Seq.
DOI: 10.6084/m9.figshare.26993233.v1
title: Additional file 2 of Genome-wide profiling of histone (H3) lysine 4 (K4) tri-methylation (me3) under drought, heat, and combined stresses in switchgrass

description: Additional file 2: Supplemental Table 2. ChIP-Seq analysis of differentially marked histone H3K4me3 peaks in response to DT and DTHT.
DOI: 10.6084/m9.figshare.26993242.v1
title: Additional file 5 of Genome-wide profiling of histone (H3) lysine 4 (K4) tri-methylation (me3) under drought, heat, and combined stresses in switchgrass

description: Additional file 5: Supplemental Table 5. DT and DTHT-responsive peaks correlated with corresponding protein coding genes identified by RNA-Seq analysis.
DOI: 10.6084/m9.figshare.26993236.v1
title: Additional file 3 of Genome-wide profiling of histone (H3) lysine 4 (K4) tri-methylation (me3) under drought, heat, and combined stresses in switchgrass

description: Additional file 3: Supplemental Table 3. Average number of H3K4me3 peaks in DT and DTHT-treated samples.
DOI: 10.6084/m9.figshare.26993239
title: Additional file 4 of Genome-wide profiling of histone (H3) lysine 4 (K4) tri-methylation (me3) under drought, heat, and combined stresses in switchgrass

description: Additional file 4: Supplemental Table 4. Reads per million (RPM) of the differential peaks identified between DT vs Ctrl, DTHT vs Ctrl, and DTHT vs DT.
DOI: 10.6084/m9.figshare.26993242
title: Additional file 5 of Genome-wide profiling of histone (H3) lysine 4 (K4) tri-methylation (me3) under drought, heat, and combined stresses in switchgrass

description: Additional file 5: Supplemental Table 5. DT and DTHT-responsive peaks correlated with corresponding protein coding genes identified by RNA-Seq analysis.
DOI: 10.6084/m9.figshare.26993245.v1
title: Additional file 6 of Genome-wide profiling of histone (H3) lysine 4 (K4) tri-methylation (me3) under drought, heat, and combined stresses in switchgrass

description: Additional file 6: Supplemental Table 6. AgriGO analysis of genes associated with differential peaks involved in biological, molecular, and cellular functions in response to DT and DTHT.
DOI: 10.6084/m9.figshare.26993245
title: Additional file 6 of Genome-wide profiling of histone (H3) lysine 4 (K4) tri-methylation (me3) under drought, heat, and combined stresses in switchgrass

description: Additional file 6: Supplemental Table 6. AgriGO analysis of genes associated with differential peaks involved in biological, molecular, and cellular functions in response to DT and DTHT.
DOI: 10.6084/m9.figshare.26993230.v1
title: Additional file 1 of Genome-wide profiling of histone (H3) lysine 4 (K4) tri-methylation (me3) under drought, heat, and combined stresses in switchgrass

description: Additional file 1: Supplemental Table 1. List of primers selected for real-time quantitative PCR (q-RT-PCR) from ChIP-Seq.
DOI: 10.6084/m9.figshare.26993176.v1
title: Additional file 1 of Transcriptomic meta-analysis to identify potential antifungal targets in Candida albicans

description: Supplementary Material 1. Additional Table .xlsx contains detailed samples information
DOI: 10.15468/dl.j7bcqe
title: Occurrence Download

description: A dataset containing 50154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Specimen, Material citation, Material sample, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ephedra Tourn. ex L."
 ]
}

 The dataset includes 50154 records from 620 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011679-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26993266
title: Additional file 1 of Multi-omics data elucidate parasite-host-microbiota interactions and resistance to Haemonchus contortus in sheep

description: Additional file 1: Table S1. edgeR analysis of differential gene expression in the abomasum between H. contortus-susceptible and H. contortus-resistant Morada Nova sheep. Table S2. DESeq2 analysis of differential gene expression in the abomasum between H. contortus-susceptible and H. contortus-resistant Morada Nova sheep. Table S3. DESeq2 analysis of differential transcript expression in the abomasum between H. contortus-susceptible and H. contortus-resistant Morada Nova sheep. Table S4. Ballgown analysis of differential transcript expression in the abomasum between H. contortus-susceptible and H. contortus-resistant Morada Nova sheep. Table S5. Annotation and impact of homozygous SNPs between resistant and susceptible Morada Nova sheep detected after case-control variant calling of RNA-seq data. Table S6. Genes located in the +/- 1 Mbp window of each significant SNP by GWAS for EPG in Morada Nova sheep. Table S11. DESeq2 analysis of differential gene expression in H. contortus recovered from resistant and susceptible Morada Nova sheep. Table S12. edgeR analysis of differential gene expression in H. contortus recovered from resistant and susceptible Morada Nova sheep. Table S13. DESeq2 analysis of differential transcript expression in H. contortus recovered from resistant and susceptible Morada Nova sheep. Table S14. Ballgown analysis of differential transcript expression in H. contortus recovered from resistant and susceptible Morada Nova sheep. Table S15. Genes expressed in H. contortus recovered from resistant and susceptible Morada Nova sheep. Table S16. Gene-level features and ASV modules associated with resistance to H. contortus. Table S17. ASV taxonomy of gene co-expression modules from sheep feces and rumen content associated with resistance to H. contortus. Table S18. Gene-level relevant pathways and ASV modules in H. contortus-resistant and H. contortus-susceptible Morada Nova sheep. Table S19. Transcript-level features and ASV modules associated with resistance to H. contortus. Table S20. Transcript functional co-expression modules and ASVs associated with resistance to H. contortus. Table S21. Transcript-level relevant pathways and ASV modules in H. contortus-resistant and H. contortus-susceptible Morada Nova sheep.
DOI: 10.6084/m9.figshare.26993266.v1
title: Additional file 1 of Multi-omics data elucidate parasite-host-microbiota interactions and resistance to Haemonchus contortus in sheep

description: Additional file 1: Table S1. edgeR analysis of differential gene expression in the abomasum between H. contortus-susceptible and H. contortus-resistant Morada Nova sheep. Table S2. DESeq2 analysis of differential gene expression in the abomasum between H. contortus-susceptible and H. contortus-resistant Morada Nova sheep. Table S3. DESeq2 analysis of differential transcript expression in the abomasum between H. contortus-susceptible and H. contortus-resistant Morada Nova sheep. Table S4. Ballgown analysis of differential transcript expression in the abomasum between H. contortus-susceptible and H. contortus-resistant Morada Nova sheep. Table S5. Annotation and impact of homozygous SNPs between resistant and susceptible Morada Nova sheep detected after case-control variant calling of RNA-seq data. Table S6. Genes located in the +/- 1 Mbp window of each significant SNP by GWAS for EPG in Morada Nova sheep. Table S11. DESeq2 analysis of differential gene expression in H. contortus recovered from resistant and susceptible Morada Nova sheep. Table S12. edgeR analysis of differential gene expression in H. contortus recovered from resistant and susceptible Morada Nova sheep. Table S13. DESeq2 analysis of differential transcript expression in H. contortus recovered from resistant and susceptible Morada Nova sheep. Table S14. Ballgown analysis of differential transcript expression in H. contortus recovered from resistant and susceptible Morada Nova sheep. Table S15. Genes expressed in H. contortus recovered from resistant and susceptible Morada Nova sheep. Table S16. Gene-level features and ASV modules associated with resistance to H. contortus. Table S17. ASV taxonomy of gene co-expression modules from sheep feces and rumen content associated with resistance to H. contortus. Table S18. Gene-level relevant pathways and ASV modules in H. contortus-resistant and H. contortus-susceptible Morada Nova sheep. Table S19. Transcript-level features and ASV modules associated with resistance to H. contortus. Table S20. Transcript functional co-expression modules and ASVs associated with resistance to H. contortus. Table S21. Transcript-level relevant pathways and ASV modules in H. contortus-resistant and H. contortus-susceptible Morada Nova sheep.
DOI: 10.6084/m9.figshare.26993269
title: Additional file 2 of Multi-omics data elucidate parasite-host-microbiota interactions and resistance to Haemonchus contortus in sheep

description: Additional file 2: Table S7. Cis-eQTL for differentially expressed genes between resistant and susceptible Morada Nova sheep. Table S8. Trans-eQTL for differentially expressed genes between resistant and susceptible Morada Nova sheep. Table S9. Cis-eQTL for differentially expressed transcripts between resistant and susceptible Morada Nova sheep. Table S10. Trans-eQTL for differentially expressed transcripts between resistant and susceptible Morada Nova sheep.
DOI: 10.6084/m9.figshare.26993269.v1
title: Additional file 2 of Multi-omics data elucidate parasite-host-microbiota interactions and resistance to Haemonchus contortus in sheep

description: Additional file 2: Table S7. Cis-eQTL for differentially expressed genes between resistant and susceptible Morada Nova sheep. Table S8. Trans-eQTL for differentially expressed genes between resistant and susceptible Morada Nova sheep. Table S9. Cis-eQTL for differentially expressed transcripts between resistant and susceptible Morada Nova sheep. Table S10. Trans-eQTL for differentially expressed transcripts between resistant and susceptible Morada Nova sheep.
DOI: 10.6084/m9.figshare.26993299
title: Additional file 1 of Hepatozoon (Eucoccidiorida: Hepatozoidae) in wild mammals of the Americas: a systematic review

description: Additional file 1: Table S1. Wild mammals with reported Hepatozoon spp. in the Americas.Table S2. Primer details and thermal conditions used for the molecular diagnosis and genotyping of Hepatozoon in wild mammals of the Americas.Table S3. 18S rDNA Hepatozoon sequences (≥387 bp) listed in GenBank database until December 2022, flanking one or more of the nine SSU rRNA regions.Table S4. Genetic variants of Hepatozoon spp. circulating among wild mammals in the Americas.
DOI: 10.6084/m9.figshare.26993299.v1
title: Additional file 1 of Hepatozoon (Eucoccidiorida: Hepatozoidae) in wild mammals of the Americas: a systematic review

description: Additional file 1: Table S1. Wild mammals with reported Hepatozoon spp. in the Americas.Table S2. Primer details and thermal conditions used for the molecular diagnosis and genotyping of Hepatozoon in wild mammals of the Americas.Table S3. 18S rDNA Hepatozoon sequences (≥387 bp) listed in GenBank database until December 2022, flanking one or more of the nine SSU rRNA regions.Table S4. Genetic variants of Hepatozoon spp. circulating among wild mammals in the Americas.
DOI: 10.6084/m9.figshare.26993314
title: Additional file 1 of Macroalgal microbiomes unveil a valuable genetic resource for halogen metabolism

description: Additional file 1: Table S1. Sphaerococcus coronopifolius. Table S2. Sequencing Metadata. Table S3. Sphaerococcus coronopifolius. Table S4. High- and medium-quality MAGs. Genome sizes, completness and contaminations estimated are reported. Table S5. GTDB-Tk taxonomic classification of Sphaerococcus coronopifolius MAGs. Table S6. Number of novel candidate taxa emerged after the GTDB-Tk classification of binned prokaryotic MAGs. Table S7. Gene density. Table S9. Annotated BRENDA-EC161 functions* in each single MAG§ and taxonomic affiliation†.
DOI: 10.6084/m9.figshare.26993314.v1
title: Additional file 1 of Macroalgal microbiomes unveil a valuable genetic resource for halogen metabolism

description: Additional file 1: Table S1. Sphaerococcus coronopifolius. Table S2. Sequencing Metadata. Table S3. Sphaerococcus coronopifolius. Table S4. High- and medium-quality MAGs. Genome sizes, completness and contaminations estimated are reported. Table S5. GTDB-Tk taxonomic classification of Sphaerococcus coronopifolius MAGs. Table S6. Number of novel candidate taxa emerged after the GTDB-Tk classification of binned prokaryotic MAGs. Table S7. Gene density. Table S9. Annotated BRENDA-EC161 functions* in each single MAG§ and taxonomic affiliation†.
DOI: 10.6084/m9.figshare.26993329
title: Additional file 2 of TYROBP/DAP12 knockout in Huntington’s disease Q175 mice cell-autonomously decreases microglial expression of disease-associated genes and non-cell-autonomously mitigates astrogliosis and motor deterioration

description: Additional file 2: Table S1. Pathway enrichment analysis for upregulated genes detected in human HD datasets. Top 10 significant pathways are shown (WikiPathway 2021 Human).
DOI: 10.6084/m9.figshare.26993329.v1
title: Additional file 2 of TYROBP/DAP12 knockout in Huntington’s disease Q175 mice cell-autonomously decreases microglial expression of disease-associated genes and non-cell-autonomously mitigates astrogliosis and motor deterioration

description: Additional file 2: Table S1. Pathway enrichment analysis for upregulated genes detected in human HD datasets. Top 10 significant pathways are shown (WikiPathway 2021 Human).
DOI: 10.6084/m9.figshare.26993335
title: Additional file 3 of TYROBP/DAP12 knockout in Huntington’s disease Q175 mice cell-autonomously decreases microglial expression of disease-associated genes and non-cell-autonomously mitigates astrogliosis and motor deterioration

description: Additional file 3: Table S2. Overrepresented Gene Ontology (GO) terms within the STRING protein-protein interaction (PPI) network.
DOI: 10.6084/m9.figshare.26993335.v1
title: Additional file 3 of TYROBP/DAP12 knockout in Huntington’s disease Q175 mice cell-autonomously decreases microglial expression of disease-associated genes and non-cell-autonomously mitigates astrogliosis and motor deterioration

description: Additional file 3: Table S2. Overrepresented Gene Ontology (GO) terms within the STRING protein-protein interaction (PPI) network.
DOI: 10.6084/m9.figshare.26993338
title: Additional file 4 of TYROBP/DAP12 knockout in Huntington’s disease Q175 mice cell-autonomously decreases microglial expression of disease-associated genes and non-cell-autonomously mitigates astrogliosis and motor deterioration

description: Additional file 4: Table S3. DEGs detected in bulk transcriptomics. Q175 vs WT comparison.