cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/d3y42pvx5x.1
title: Trophic_Transfer_of_Microplastic_in_Social_Hymenoptera

description: Relevance, background, gap of knowledge, reduced methods, findigs and interpretation:
Anthropogenic pollutants are one facet of global change contributing to insect decline in terrestrial ecosystems. Microplastic (MP), a major particulate pollutant, is already ubiquitously present in terrestrial ecosystems and expected to further accumulate. However, studies on effects of MP on the ecologically important social insects are still scarce. In social insects, negative effects of MP pollution could not only manifest on the individual but also on the colony level due to cooperative brood care. We tested whether MP particles taken up by workers of the Japanese carpenter ant (Camponotus japonicus) and the buff-tailed bumblebee (Bombus terrestris) are transferred to larval stages during brood care. We exposed ant and bumblebee workers to MP-contaminated food and subsequently analysed the digestive systems of workers, larvae, and pupae for the presence of MP particles. Both, ant and bumblebee workers, had ingested MP particles with food. However, while we found numerous MP particles in the digestive system of bumblebee larvae, we found no MP particles in the digestive system of ant larvae. This is likely due to the infrabuccal pocket (IBP), a filtering device for particulate matter only present in the ants, that effectively prevents the transfer of particulate pollutants such as MP within colonies during cooperative brood care. In contrast, in bumblebees the unobstructed transfer of MP from workers to larvae may entail negative effects on larvae or carry-over effects during development. Thus, negative colony-level effects of pollutants on social Hymenoptera may be exacerbated in those species that lack an IBP.

The data shows the detection of MP on the body surface or in the body (e.g. digestive system) of the different developmental stages (larva, pupa, worker) of ants (Camponotus japonicus) or bumblebees (Bombus terrestris). The data shows a clear assignment of speciment to the treatment groups [fed with MP (fine MP, coarse MP, tire wear particles = TWP), fed with control solutions] and explains their origin (source colonies/microcolonies).

Data Gathering:
The data was gathered after experimental exposition of the organisms to the respective treatments via dissection or tissue clearing. The MP particles were fluorescence labelled and, therefore, were detected with fluorescence microscopy. The tire wear particles were detected via microscopy with visible light and additionally confirmed using a further microscope with higher magnification.

Data and code use:
The data can be used like any other presece/absence data. All important information on the data per coloumn are given in the headers. All steps of analysis are expained in the R-script.
DOI: 10.15468/dl.53cp8g
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dama dama",
 "Country is Croatia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 110 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015160-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/7hy5n477tj
title: Reasearch data for the research article "Moving Abrikosov vortex lattices generate sub-40 nm magnons"

description: Research data underlying research article "Moving Abrikosov vortex lattices generate sub-40 nm magnons" by O. V. Dobrovolskiy, Q. Wang, D. Yu. Vodolazov, R. Sachser , M. Huth, S. Knauer, and A. I. Buzdin.
DOI: 10.17632/7hy5n477tj.1
title: Reasearch data for the research article "Moving Abrikosov vortex lattices generate sub-40 nm magnons"

description: Research data underlying research article "Moving Abrikosov vortex lattices generate sub-40 nm magnons" by O. V. Dobrovolskiy, Q. Wang, D. Yu. Vodolazov, R. Sachser , M. Huth, S. Knauer, and A. I. Buzdin.
DOI: 10.15468/dl.ze94zq
title: Occurrence Download

description: A dataset containing 471 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Myrmothera simplex)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 471 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015162-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/psdmryynyw.2
title: Comparative efficacy of psilocybin versus nicotine patch in smoking cessation

description: BACKGROUND. Annual tobacco-related deaths are estimated at 480,000 in the US and 8 million worldwide, dwarfing mortality for all other drugs of abuse. Most smoking cessation interventions result in modest long-term success rates. A pilot study in 15 treatment-resistant smokers found psilocybin with cognitive behavioral therapy resulted in 80% point-prevalence abstinence rates at 6 months.
METHODS. This comparative efficacy study randomized 82 cigarette smokers to receive either 30 mg/70 kg psilocybin (n=42) or FDA-approved nicotine patch treatment (n=40). Both groups received a 13-week manualized cognitive behavioral therapy (CBT) program for smoking cessation. Introspective psilocybin sessions occurred on the target-quit-date. Biochemically verified prolonged smoking abstinence (primary) and point-prevalence abstinence (secondary) at 6 months were compared between groups using intent-to-treat analysis.
RESULTS. Participants on average were 48 years old, smoked 16 cigarettes daily, and had 8 previous unsuccessful quit attempts. The sample was 40% female and 89% White. Demographics did not differ significantly between groups. At 6-month follow-up, prolonged abstinence rates were 40.5% for psilocybin vs 10% for nicotine patch (odds ratio [OR], 6.1 [95% CI, 2.0 - 23.3], p = .003), and point-prevalence abstinence rates were 52.4% for psilocybin vs 25.0% for nicotine patch (OR=3.3 [95% CI, 1.3 – 8.7], p = .013). No serious adverse events were attributed to psilocybin or nicotine patch. 
CONCLUSIONS. One psilocybin session, compared to nicotine patch treatment, with manualized CBT, significantly and substantially increased long-term tobacco abstinence. Abstinence rates were considerably higher than typical smoking cessation treatments, indicating robust promise of psilocybin for tobacco smoking cessation.
TRIAL REGISTRATION. ClinicalTrials.gov Identifier: NCT01943994
DOI: 10.5281/zenodo.16745539
title: Supplementary Datasets for "Benchmarking Greenhouse Gas Emissions from U.S. Wastewater Treatment for Targeted Reduction"
DOI: 10.15468/dl.n77jct
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Myrmornis stictoptera)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015161-250802193616735/datasets/export for details.
DOI: 10.5066/p9r0hwpr
title: Mean tidal range in marsh units of Fire Island National Seashore and Central Great South Bay salt marsh complex, New York

description: Biomass production is positively correlated with mean tidal range in salt marshes along the Atlantic coast of the United States of America. Recent studies support the idea that enhanced stability of the marshes can be attributed to increased vegetative growth due to increased tidal range. This dataset displays the spatial variation of mean tidal range (i.e. Mean Range of Tides, MN) in the Fire Island National Seashore and Central Great South Bay salt marsh complex, based on conceptual marsh units defined by Defne and Ganju (2018). MN was based on the calculated difference in height between mean high water (MHW) and mean low water (MLW) using the VDatum (v3.5) database ( http://vdatum.noaa.gov/ ). Through scientific efforts initiated with the Hurricane Sandy Science Plan, the U.S. Geological Survey has been expanding national assessment of coastal change hazards and forecast products to coastal wetlands, including the Fire Island National Seashore and Central Great South Bay salt marshes, with the intent of providing Federal, State, and local managers with tools to estimate the vulnerability and ecosystem service potential of these wetlands. For this purpose, the response and resilience of coastal wetlands to physical factors need to be assessed in terms of the ensuing change to their vulnerability and ecosystem services. References: Defne, Z., and Ganju, N.K., 2018, Conceptual marsh units for Fire Island National Seashore and Central Great South Bay salt marsh complex, New York: U.S. Geological Survey data release, https://doi.org/10.5066/P95U2MQ7.
DOI: 10.17632/tt6j24z8g2.1
title: Dataset in municipal biowaste collection strategies in Portugal

description: The dataset provides an updated overview of the separate collection of organic kitchen waste (mostly food waste) across Portugal’s 308 municipalities. Data was collected through a structured questionnaire distributed to all municipalities and a systematic search of secondary official sources, mostly municipal websites and reports.
Collected data comprises (i) waste collection approaches followed by the municipalities, (ii) activity sectors targeted by the separate collection, (iii) Type of collection in single-family, multi-family, or mixed areas, including access to the waste container - free or controlled, (iv) date when separate collection was implemented, (v) changes made to the regular collection as a result of separate collection, (vi) capture rates and (vii) operational and investment costs, (viii) Whether economic incentive mechanisms are present and (ix) number of inhabitants and establishments covered by the separate collection.
DOI: 10.6084/m9.figshare.26356942.v1
title: Data for : "Disentangling the effects of parasite infection and temperature on the aerobic swimming performance of sunfish hosts"

description: This project contains data and metadata for the publication "Disentangling the effects of parasite infection and temperature on the aerobic swimming performance of sunfish hosts" to be submitted in <i>Canadian Journal of Zoology</i><i>.</i> DOI to be included if accepted.We assessed the aerobic swim performance of pumpkinseed sunfish and evaluated the effects of a natural gradient of parasites and temperature (20, 25 and 30°C). We measured critical swimming speed (<i>U</i><sub>crit</sub>) along with metabolic traits : Maximum metabolic rate (MMR), Standard Metabolic Rate (SMR) and Aerobic Scope (AS). There were two experiments. #1 was to evaluate the effects of parasites only and #2 to evaluate the combined effects of parasites and temperature.<br><br>The Main_data file contains all data used in the publication. The metadata file gives additional information on the columns of "Main_data". Different subset files were done (.txt) to facilitate with making figures. The code used for analyses and making figures is included as an R file.
DOI: 10.6084/m9.figshare.26356942
title: Data for : "Disentangling the effects of parasite infection and temperature on the aerobic swimming performance of sunfish hosts"

description: This project contains data and metadata for the publication "Disentangling the effects of parasite infection and temperature on the aerobic swimming performance of sunfish hosts" to be submitted in <i>Canadian Journal of Zoology</i><i>.</i> DOI to be included if accepted.We assessed the aerobic swim performance of pumpkinseed sunfish and evaluated the effects of a natural gradient of parasites and temperature (20, 25 and 30°C). We measured critical swimming speed (<i>U</i><sub>crit</sub>) along with metabolic traits : Maximum metabolic rate (MMR), Standard Metabolic Rate (SMR) and Aerobic Scope (AS). There were two experiments. #1 was to evaluate the effects of parasites only and #2 to evaluate the combined effects of parasites and temperature.<br><br>The Main_data file contains all data used in the publication. The metadata file gives additional information on the columns of "Main_data". Different subset files were done (.txt) to facilitate with making figures. The code used for analyses and making figures is included as an R file.
DOI: 10.17632/cr5hkkdtx2
title: “A time memory engram embedded in a light-entrainable circadian clock” David E. Ehichioya1, S. K. Tahajjul Taufique1, Sofia Farah, Shin Yamazaki - Current Biology

description: [March 1, 2024: Bug-fixed version of FED3.cpp uploaded]

Raw ClockLab and FED3 Data Description:
FED3 data was converted to text file format which can be directly open by the ClockLab. 
Experimental conditions are indicated in the excel file in each data holder. 


FED3 Run Code Description:

“FED3_1.16.1_RF.ino”: a code written specifically for controlling FED3 hardware such as a stepper motor which rotates a disk attached and then dispenses a pellet. It is written using Arduino Integrative Development Environment (Arduino IDE), an open-source platform that uses a programming language based on C++. The “FED3_1.16.1_RF.ino” is a modified version of the original code (“Timed_FR1.ino” with FED3 1.16.1) to enable the feeding schedule cross the midnight (the time date change occurs). For instance, a FED3 feeding schedule from 22:00 to 2:00 cannot be programmed by the original code). With this modified code, the feeding schedule can be programmed as 22:00 to 26:00 and the FED3 provides a continuous feeding window from 22:00 to 2:00.

"FED3.cpp": a code written by C++ containing user-defined functions which are declared within a class (FED3) in the "FED3.h" header file. The "FED3_1.16.1_RF.ino" file calls the class FED3. The “FED3.cpp” and “FED3.h” files are written separately from “FED3_1.16.1_RF.ino” otherwise complicated in a single ino file. Arduino IDE compiles all three files and uploads them onto the FED3 Arduino board (Adafruit Feather M0) which is connected to a PC via a USB cable. We deactivate buzzer and LED lights in the modified FED3.cpp. We also modified FED3.h to display a FED3 version with “RF” extension.



FED3 Data Converter Description:

“FED3_analysis_v1.4.3.py”: a code written for the analysis of data downloaded from the FED3 SD card. It is written using python 3.11.4. This code converts the FED3 data to the text file format which can be opened by the ClockLab.
DOI: 10.17632/cr5hkkdtx2.3
title: “A time memory engram embedded in a light-entrainable circadian clock” David E. Ehichioya1, S. K. Tahajjul Taufique1, Sofia Farah, Shin Yamazaki - Current Biology

description: [March 1, 2024: Bug-fixed version of FED3.cpp uploaded]

Raw ClockLab and FED3 Data Description:
FED3 data was converted to text file format which can be directly open by the ClockLab. 
Experimental conditions are indicated in the excel file in each data holder. 


FED3 Run Code Description:

“FED3_1.16.1_RF.ino”: a code written specifically for controlling FED3 hardware such as a stepper motor which rotates a disk attached and then dispenses a pellet. It is written using Arduino Integrative Development Environment (Arduino IDE), an open-source platform that uses a programming language based on C++. The “FED3_1.16.1_RF.ino” is a modified version of the original code (“Timed_FR1.ino” with FED3 1.16.1) to enable the feeding schedule cross the midnight (the time date change occurs). For instance, a FED3 feeding schedule from 22:00 to 2:00 cannot be programmed by the original code). With this modified code, the feeding schedule can be programmed as 22:00 to 26:00 and the FED3 provides a continuous feeding window from 22:00 to 2:00.

"FED3.cpp": a code written by C++ containing user-defined functions which are declared within a class (FED3) in the "FED3.h" header file. The "FED3_1.16.1_RF.ino" file calls the class FED3. The “FED3.cpp” and “FED3.h” files are written separately from “FED3_1.16.1_RF.ino” otherwise complicated in a single ino file. Arduino IDE compiles all three files and uploads them onto the FED3 Arduino board (Adafruit Feather M0) which is connected to a PC via a USB cable. We deactivate buzzer and LED lights in the modified FED3.cpp. We also modified FED3.h to display a FED3 version with “RF” extension.



FED3 Data Converter Description:

“FED3_analysis_v1.4.3.py”: a code written for the analysis of data downloaded from the FED3 SD card. It is written using python 3.11.4. This code converts the FED3 data to the text file format which can be opened by the ClockLab.
DOI: 10.17632/jhy93c38zt
title: "A novel circadian behavior rhythm in arrhythmic Period triple knockout mice revealed by constant light exposure. " iScience

description: All raw ClockLab files and images used in 
“A novel circadian behavior rhythm in arrhythmic Period triple knockout mice revealed by constant light exposure” S K Tahajjul Taufique1, Alexandra J Brown1, 2, Srinidhi Mahadevan1, 3, 4, David E Ehichioya1, Sofia Farah1, Melody Shen1, and Shin Yamazaki1, 5, 6,*. iScience.

Clock lab files:

Raw data files for running wheel, cage activity, pellet intake, and poking, which can be directly opened by ClockLab. Experimental conditions are indicated in the Excel file in each data folder.

RW data – running wheel
IR data – cage activity recorded using an infrared sensor
Feeder data – pellet intake and poking 

Ex-vivo SCN calcium images:

The fluorescent images of SCN explant from WT and Per 1/2/3 KO mice in constant light conditions.

Confocal images [Compressed (zipped) folder]:

The confocal images of immunohistochemical staining of the SCN (c-Fos) and VTA (c-Fos and tyrosine hydroxylase; TH) from WT and Per 1/2/3 KO mice, and the confocal images of immunohistochemical staining of the hippocampus (c-Fos) and cortex (c-Fos) from Per 1/2/3 KO mice, at CT6 and CT18 in constant light conditions.

Blue channel – DAPI
Green channel - GFP
Red channel - cFos
Far red channel - TH
DOI: 10.17632/jhy93c38zt.2
title: "A novel circadian behavior rhythm in arrhythmic Period triple knockout mice revealed by constant light exposure. " iScience

description: All raw ClockLab files and images used in 
“A novel circadian behavior rhythm in arrhythmic Period triple knockout mice revealed by constant light exposure” S K Tahajjul Taufique1, Alexandra J Brown1, 2, Srinidhi Mahadevan1, 3, 4, David E Ehichioya1, Sofia Farah1, Melody Shen1, and Shin Yamazaki1, 5, 6,*. iScience.

Clock lab files:

Raw data files for running wheel, cage activity, pellet intake, and poking, which can be directly opened by ClockLab. Experimental conditions are indicated in the Excel file in each data folder.

RW data – running wheel
IR data – cage activity recorded using an infrared sensor
Feeder data – pellet intake and poking 

Ex-vivo SCN calcium images:

The fluorescent images of SCN explant from WT and Per 1/2/3 KO mice in constant light conditions.

Confocal images [Compressed (zipped) folder]:

The confocal images of immunohistochemical staining of the SCN (c-Fos) and VTA (c-Fos and tyrosine hydroxylase; TH) from WT and Per 1/2/3 KO mice, and the confocal images of immunohistochemical staining of the hippocampus (c-Fos) and cortex (c-Fos) from Per 1/2/3 KO mice, at CT6 and CT18 in constant light conditions.

Blue channel – DAPI
Green channel - GFP
Red channel - cFos
Far red channel - TH
DOI: 10.15468/dl.tnmnzm
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Entomacrodus thalassinus thalassinus"
 ]
}

 The dataset includes 60 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015163-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.39mp4t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dama dama",
 "Country is Cyprus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015164-250802193616735/datasets/export for details.
DOI: 10.17632/4hvrdhvrbg.1
title: Critical mixture double spike Mg and Fe isotope data of ocean island basalt

description: This word file contains the Mg and Fe isotope data of ocean island basalt
DOI: 10.5281/zenodo.16741445
title: Semantically enriched statewide building dataset based on the Lower Saxony 3D Building Model for urban planning applications

description: This dataset provides a semantically enriched, GIS-compatible representation of all residential buildings across the federal state of Lower Saxony, Germany. It is derived from the official statewide 3D building model (AdV-CityGML 1.0, Level of Detail 2 – LoD2), as published by the Landesamt für Geoinformation und Landesvermessung Niedersachsen (LGLN) via OpenGeoData.NI.

The original CityGML format is highly suitable for modeling detailed and hierarchically structured 3D building geometries (e.g., roof, wall, and ground surfaces). However, its complexity and nested structure pose significant challenges for geospatial processing and large-scale spatial and data analysis — particularly in open-source GIS environments or data science workflows, which typically rely on flat, tabular data structures such as Shapefiles, GeoPackages, or CSV files. Furthermore, the highly detailed 3D geometries introduce considerable computational overhead, making statewide analysis across millions of buildings prohibitively expensive in terms of processing time and hardware requirements.

To address these challenges, the original dataset was algorithmically transformed into a lightweight, analysis-ready representation. Complex 3D geometries were generalized into 2D building footprints, while key semantic attributes — including building height, roof type, usage class, and 3D surface areas — were retained in structured form. This significantly reduces data volume and enables efficient geospatial analyses even on standard computing systems.

The dataset is made available in two interoperable formats:





GeoPackage (.gpkg), which provides native 2D geometries with enriched attribute data and supports spatial operations such as overlays, buffer zones, or proximity calculations in tools like QGIS or Python (GeoPandas).




CSV (.csv), a flat tabular version containing identical attributes, with building geometries expressed as Well-Known Text (WKT), allowing seamless use in data science environments such as Python (pandas, seaborn, matplotlib), R, or Excel.



By bridging semantic richness and technical accessibility, this dataset enables full-coverage, statewide spatial analysis at scale, supporting a wide range of applications in urban planning, environmental assessment, and geospatial research.