cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/k3f6fnz6xr
title: Role of CD40 on CD14- CD16+ monocyte in mediating the effect of Dialister on Depression

description: Objective: To explore the cause-and-effect link between gut microbiota and depression, and to determine and measure the function of immune cells as possible intermediaries.Methods：This research involved conducting a dual-sample Mendelian randomization analysis (MR) on genetically forecasted gut microbiota (7,738 individuals) and depression (25,087 individuals and 92,695 controls), utilizing aggregate data from a genome-wide association study (GWAS). The primary MR analysis employed inverse variance-weighted (IVW), along with additional techniques, and we executed heterogeneity and level pleiotropy tests to corroborate the primary MR findings. Furthermore, genetic variations in immune cell signatures were extracted from an extensive, open-label genome-wide social study (GWAS) with 3757 participants, utilizing a two-phase MR analysis to ascertain and measure the impact of CD40 on the CD14-CD16+ monocyte-driven effects of Microbacterium on depression.Results: By MR analysis, five gut bacteria were associated with a reduced risk of depression: Butyrivibrio (OR=0.9922, 95%, CI=0.9864-0.9980, P=0.0084), Sutterellaceae (OR=0.9843, 95%CI=0.9732-0.9956, P=0.0067), Dialister (OR=0.9887, 95%CI=0.9775-1.0000, P=0.0497), Bacteroides (OR=0.9883, 95%CI=0.9768-1.0000, P=0.0476), Butyrivibrio_crossotus (OR=0.9933, 95%CI=0.9879-0.9988, P=0.0166), and there was no strong evidence of a causal relationship between depression and gut bacteria. The im-muno phenotype were identified as significantly associated with depression risk. In addition, we also found that the proportion of CD40 on CD14- CD16+ monocyte-mediated in genetically predicted Dialister on depression was 5.42%.Conclusions: Our study identified five gut microbiota that reduced the risk of depression, and twenty-seven immunophenotypes are significantly associated with depression. Of these, the CD40-mediated microbiota has small effect on CD14-CD16+ monocytes, but these effects are largely unknown and additional potential factors need to be investigated. Clinically, attention should be paid to the effects of the gut microbiome on depression.
DOI: 10.17632/pds7nxm5pf
title: 2. Procedural details of the three stages of the comparative move analysis

description: Procedural details of the three stages of the comparative move analysis
DOI: 10.17632/pw4thmh9b8
title: LINF_190013000

description: Vps53-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/y9vfwkwxk5
title: Application of Artificial Neural Networks to Evaluate Femur Development in the Human Fetus

description: data used to develop the ANN model
DOI: 10.17632/zzyvgc4mdx
title: Data for: Methane and carbon dioxide emissions from cul-tivated and native mangrove species in Dongzhai Harbor, Hainan

description: Paper data
DOI: 10.17632/3csvgh5ph2
title: Data for: Verification of the Current Coupling Collision Probability Method with Orthogonal Flux Expansion for the Assembly Calculations

description: Results of calculations for the manuscript "Verification of the Current Coupling Collision Probability Method with Orthogonal Flux Expansion for the Assembly Calculations"
DOI: 10.17632/ggjxnx26dk
title: ASRI-95014

description: In this article, we wanted to show that if management decision-making methods are used based on the available information on the parameters related to the production status and animal health, it is possible to make the best choice in cases where there is a slight difference between nutritional treatments.
DOI: 10.17632/mg38whggpj
title: Immunohistochemical results of keloid

description:  Keloid. Immunohistochemical staining was carried out using CD4 antibody, CD68 antibody, IL-1β antibody, IL-6 antibody, E-selectin antibody, VCAM-1 antibody and visualized by a standard streptavidin biotin horseradish peroxidase technique. Scale bar:100 μm.
DOI: 10.17632/nvdf6mb6d5
title: Raw data for seroprevalence study

description: Raw data for HAV seroprevalence study
DOI: 10.17632/nzw53yp6bj
title: Ellobius Talpinus

description: To find out whether the social subterranean rodent, the northern mole vole (Ellobius talpinus) hibernate in winter, nine individuals from Southern Siberia were captured in late autumn, and implanted with original loggers, that constantly recorded body temperature (Tb) and locomotor activity and then released.
DOI: 10.17632/s3ymp5kgv6
title: LINF_240023300

description: calcium/calmodulin-dependent protein kinase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/sm4ygw3fmw
title: Classification of energy conversion system design approaches for manufacturing companies

description: This dataset contains the complete classification of 125 research articles addressing the topic of energy conversion system (ECS) design for manufacturing companies. The classification bases on the ECS design framework published by Ganschinietz, C. (2021). Besides the classification presented by two matrices (landscape and portrait), the Excel-File also contains the empirical analysis summarized in the associated paper. The publication related to the data set explains all the details: “On-site energy conversion systems for manufacturing companies – A review and literature analysis”.

Ganschinietz, C. (2021): Design of on-site energy conversion systems for manufacturing companies – A concept-centric research framework, Journal of Cleaner Production, Volume 310, 2021, https://doi.org/10.1016/j.jclepro.2021.127258.
DOI: 10.17632/v9y6jvmk4b
title: LDHU3_13.1300

description: mt-SAF16; Leishmania donovani (HU3 strain)
DOI: 10.17632/9bwc2gcmzn
title: S2 File. Content proficiency assessments.

description: S2 File. Content proficiency assessments.
DOI: 10.17632/bzvrgpzsw2
title: European birth data of the Systematic Review

description: Search terms and search strategy. 
Note: The search strategy was modified based on the search engine's used.
DOI: 10.17632/fngbxjwgx2
title: Paleomagnetic samples - Plio-Pleistocene volcanics in the northern sector of the Antiñir-Copahue fault system (Neuquén Cordillera, Argentina)

description: Zijderveld diagrams from paleomagnetic samples and interpreted directions, ready to be opened in Remasoft (AGICO) program.

The first number of the name of the Bella Vista (BV) section samples corresponds to the name of the site. For example, sample BV1-1.2 corresponds to site BV1.
In the case of the Río Huaraco section (NH), samples NH1, 2 and 3 correspond to site NH1; NH4, 5 and 6 to site NH2; NH7, 8 and 9 to site NH3; NH10, 11 and 12 to site NH4; NH13, 14 and 15 to site NH5; NH 16 and 17 to site 6; NH18 and 19 to site 7; and NH20 and 21 to site NH 8.

All samples were obtained from Plio-Pleistocene basaltic lavas.
DOI: 10.17632/hrs7bttwhn
title: Data for: Dataset for NiO/ZnO biomorphic nanocomposite using a poplar tree leaf template to generate an enhanced gas sensing platform to detect n-butanol

description: The dataset in this articles describes the mophology and semiconductor properties of PTLT ZnO and PTLT NiO/ZnO. Fig. 1 describes the morphology of PTLT ZnO. Fig. 2 describes the diameter stastics of non-template ZnO and PTLT ZnO. Fig. 3 describes the UV-Vis Res spectrum of PTLT ZnO and PTLT NiO/ZnO.
DOI: 10.17632/hw5wcy8jzt
title: Raw data for all anatical data in the manuscript by Nie et al. to be published by Geochimica et Cosmochimica Acta as " Volatile and hydrogen isotopes in apatite reveal slab tearing-induced high temperature S-type granitic magmatism in South China".

description: Raw data for all anatical data in the manuscript by Nie et al. to be published by Geochimica et Cosmochimica Acta as " Volatile and hydrogen isotopes in apatite reveal slab tearing-induced high temperature S-type granitic magmatism in South China".
DOI: 10.17632/kbfkkcpvck
title: LINF_320006200

description: MEKK-related kinase 1 | MRK1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/s9cbtrmk4x
title: Non-classical operational calculus in determining the shape of a compressed column

description: MS Excel file with formulas and graphs describing the relationship between the compressive axial force subjected to a column and the column deflection
DOI: 10.17632/stt32dp5r5
title: The role of Insurance in disaster risk reduction in South America
DOI: 10.17632/w5zy4vct6r
title: Clinical-histopathological features and cancer gene analysis of cutaneous epithelioid angiosarcoma: a report of four cases

description: We have summarized the clinical information for the four epithelioid angiosarcoma.
DOI: 10.17632/w6z3g43syk
title: Data 3 of 3 for: Optical coherence tomography imaging of evoked neural activity in sciatic nerve of rat

description: For description and Read_me.txt, see "Data 1 of 3 for: Optical coherence tomography imaging of evoked neural activity in sciatic nerve of rat"
DOI: 10.17632/w7gt8zdp3r
title: Assessment of antibiotic pharmacokinetics, molecular biomarkers and clinical status in critically ill adults diagnosed with community-acquired pneumonia

description: The protocol of a clinical study aimed at the characterization of the pharmacokinetics of piperacillin and tazobactam and its association with the concentrations of inflammatory markers and adrenal steroids during CAP therapy will be investigated in up to 40 critically ill patients.
DOI: 10.17632/5jjkyrn7gn
title: LINF_110006300

description: cell cycle sequence binding phosphoprotein | RBP33; Leishmania infantum
DOI: 10.17632/5wjr4p48mv
title: uric acid level and cognitive function schizophrenics

description: uric acid level and cognitive function schizophrenics
DOI: 10.17632/75cz4xmzdv
title: Visually imapired paper

description: SPSS file with the data published for the paper titled:
Differences in performance and preference of visually-impaired individuals in an object localization task between tactile, verbal and sonification cueing modalities
DOI: 10.17632/g885pdr98z
title: Expression of foraging genes is associated with the division of labor among Western and Eastern honey bee adult workers

description: In the division of labor (DOL), individual bees exhibit varying behavioral responses to the same stimulus. Specifically, the response of adult worker bees to sucrose is highly variable and closely linked to differences in the behavioral decision-making. However, it is unclear whether patterns of gene-behavior interactions influence the DOL. In this study, we investigated the DOL mechanism in honeybee adult workers is associated with the sucrose responsiveness of bee foragers. First, we quantified the gustatory response scores (GRS) of the Western bee Apis mellifera and the Eastern bee Apis cerana under four tasks, that is, pollen foraging, nectar foraging, water foraging, and guarding. Second, we determined the mRNA levels of six forage-related genes in bees’ brains, namely the foraging genes Amfor and Acfor, which encode a cyclic guanosine monophosphate-dependent protein kinase, the dopamine receptor genes AmOct and AcOct, and the insulin receptor genes AmInR and AcInR. The results revealed that among Western bees, water and pollen foragers had the highest GRS. Among Eastern bees, water foragers had significantly higher GRS than nectar foragers. However, we observed no significant difference in the GRS between A. mellifera and A. cerana bee species under different tasks. The highest expression of foraging genes was detected in water foragers among A. mellifera species and guard bees among A. cerana species. Furthermore, we observed a significant positive correlation between foraging gene expressions and GRS in both Western and Eastern foragers. The results suggest that both bee species exhibit the same sensitivity in foraging for food in their ecological niches, and PKG signaling in the bees’ brain is directly linked to the DOL.
DOI: 10.17632/n8mhp2n7rh
title: Transition cow nutrition and management strategies of dairy herds in the northeastern US: Part III – Associations of management and dietary factors with analytes, health, milk yield, and reproduction

description: The objective was to evaluate relationships between putative periparturient management factors at the pen- and herd-level with metabolic- and inflammation-related analytes, health disorders, milk yield, and reproductive performance. Multiparous and primiparous cows from 72 farms in the Northeastern US were enrolled in a prospective cohort study. Farms were visited three times during the prepartum and postpartum periods: far-off dry, close-up dry, and fresh periods. For the prepartum period, our results support increasing the proportion of particles on the 19-mm sieve of the Penn State Particle Separator, optimizing bunk space, and not overfeeding ME to decrease the prevalence of elevated postpartum NEFA, BHB, and Hp concentrations, decrease disorder incidence, maximize milk yield, and improve pregnancy risk to first service. For the fresh period, our results generally support optimizing bunk space, avoiding commingling, increasing the feeding frequency, avoiding high physically effective undigested neutral detergent fiber (NDF) after 240 h of in vitro fermentation and high total fermentable carbohydrate diets while optimizing the inclusion of forage NDF, and ensuring adequate diet metabolizable energy (ME) and metabolizable protein to reduce the prevalence of elevated postpartum NEFA, BHB, and Hp concentrations, minimize disorder incidence, maximize milk yield, and improve pregnancy risk to first service. At the herd-level, our results generally support not vaccinating in the calving pen, minimizing the number of prepartum and postpartum pen moves, and avoiding long stays in the calving pen after parturition to reduce the prevalence of elevated biomarker concentrations, decrease disorder incidence, increase milk yield and improve reproductive performance.
DOI: 10.17632/njd29jsdfr
title: Dissecting regulatory pathways for transcription recovery following DNA damage reveals a non-canonical function of the histone chaperone HIRA

description: Original data used in our publication by Bouvier et al., 2021, including original microscopy images, western-blot scans, FACS data, results of image analyses and of nascent transcriptome analyses. Folders are organized as Main Figures and Supplementary Figures with a subfolder for each figure panel. We combine cell imaging and genome-wide analyses of nascent transcripts to dissect the mechanisms underlying the function of the histone chaperone complex HIRA in transcription recovery following UV damage in human cells.
DOI: 10.17632/sggwff4d25
title: Influence of buried organic material on wind erosion: a wind tunnel investigation

description: The data package is experimental data on the various parts of the manuscript "Influence of buried organic material on wind erosion: a wind tunnel investigation". All data is stored in the excel table.
DOI: 10.17632/wn52z3bzn7
title: LINF_360049300

description: Qb-SNARE protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/wnnwmmf9bx
title: Changes in arrival and breeding in Common Swifts (Apus apus) in Israel

description: Data and R script for publication: Changes in arrival and breeding in Common Swifts (Apus apus) in Israel
DOI: 10.17632/zv9hxkbdxf
title: LINF_200017400

description: Domain of unknown function (DUF1935) 
Leishmania infantum (strain JPCM5)
DOI: 10.17632/4g3wyn2d8j
title: RCT Cognitive stimulation and biomarkers

description: Clinical trial with Oficina da Lembranca, a cognitive stimulation with computers, and biomarkers of neuroplasticity and neurodegeneration concentration.
DOI: 10.17632/bys6mnjmgp
title: LINF_260007800

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/jmyy9h8zx6
title: Soybean harvest after adding pollinator habitat

description: Data were collected to explore the impacts of added pollinator habitat planted adjacent or far away from soybean fields on the bee community and soybean yield (see Levenson, Hannah K; Sharp, April E; Tarpy, David R (2022), “Bee community metrics in different field types”, Mendeley Data, V1, doi: 10.17632/tfdcmfpwz9.1). This dataset includes information on soybean harvest from two different field types: a soybean field planted adjacent to the pollinator habitat (which acts as the treatment field) and a soybean field planted far away from the pollinator habitat (which acts as a negative control field).
DOI: 10.17632/r3nkyz4rs7
title: VZVF-PRP

description: The vesicovaginal fistula (VVF) is an abnormal pathway that runs between the bladder and the vagina, permitting urine to be continuously discharged into the vagina inadvertently.  
Platelet-rich plasma (PRP), platelet-derived growth factor (PDGF), transfoming growth factor ß (TGF ß), vascular endothelial growth factor (VEGF) and endothelial growth factor (EGF) and adhesion proteins that play a role in tissue healing are found [7]. It can promote cell migration, proliferation, differentiation, angiogenesis and removal of tissue debris through growth factors and chemical mediators [7,8].  As a result, PRP can accelerate the closure of the fistula line by helping tissue repair, healing and regeneration.
DOI: 10.17632/rscy8v7fkb
title: Data for: Permian subduction of the Paleo-Pacific oceanic lithosphere beneath the Jiamusi Block: Geochronological and geochemical evidence from the Luobei mafic intrusions in northeast China

description: Tables S1-S3
DOI: 10.17632/s3w6brxhjm
title: LINF_150010400

description: protein of unknown function - conserved Leishmania infantum (strain JPCM5)
DOI: 10.17632/vfmx3cj97c
title: Paired emitter detector diode array for colorimetric detection of water treatment chemicals dataset

description: This repository contains the data used to determine the emission and absorption spectra of LEDs, as well as the measurements obtained from this system to assess the concentration of copper sulfate, iodine, and potassium permanate .
DOI: 10.17632/vngmg75bvb
title: LINF_360069600

description: Flagellum attachment zone protein 5 | FAZ5
Leishmania infantum (strain JPCM5)
DOI: 10.17632/zdykgmv68n
title: Ammonia is associated with Sepsis-Associated Encephalopathy: A Prospective Observational Study

description: A cohort of 99 patients diagnosed with sepsis 3.0 were recruited for this investigation, with serum and cerebrospinal fluid concentrations of neuron-specific enolase (NSE), S100 calcium-binding protein β (S100β), ammonia, and astrocytes being analyzed.
DOI: 10.17632/zpx9p63dxx
title: LINF_230013000

description: PAP2 superfamily
Leishmania infantum (strain JPCM5)
DOI: 10.17632/2ck8dm945d
title: Tendencias de análisis de datos con implicaciones de relaciones difusas

description: Caracterizar las tendencias generadas en el análisis de datos con implicaciones de relaciones difusas.
DOI: 10.17632/dn92cbcm7g
title: Bidirectional substrate shuttling between the 26S proteasome and the Cdc48 ATPase promotes protein degradation, Li et al

description: This dataset contains fluorescent gel images, coomassie blue stained SDS-PAGE gel images, and western blot images included in the manuscript Bidirectional substrate shuttling between the 26S proteasome and the Cdc48 ATPase promotes protein degradation, by Li et al
DOI: 10.17632/j2w6b4w7jb
title: LINF_180009900

description: BTB/POZ domain containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/j9dmxk5vgt
title: What You See and Read

description: Data used for the paper "What You See and Read: Framing Effect of Valenced Text and Photograph in Political News."
DOI: 10.17632/mbhnd2b9c7
title: RAD51AP1 regulates ALT-HDR through chromatin-directed homeostasis of TERRA

description: Alternative lengthening of telomeres (ALT) is a homology-directed repair (HDR) mechanism of telomere elongation that controls proliferation in subsets of highly aggressive cancer. Recent studies have revealed that TERRA (telomere repeat-containing RNA) acts to initiate ALT-associated HDR (ALT-HDR). Here we report that RAD51AP1, a crucial ALT factor, interacts with TERRA and utilizes it to generate D- and R- loop HR intermediates. We also show that RAD51AP1 binds to and may generate and potentially stabilize TERRA-containing R-loops, as RAD51AP1 depletion reduces R-loop formation at telomere DNA breaks. Proteomic analyses uncover a new role for RAD51AP1-mediated TERRA R-loop homeostasis in a mechanism of chromatin-directed suppression of TERRA and prevention of transcription-replication collisions during ALT-HDR. Intriguingly, we find that both TERRA binding and this non-canonical function of RAD51AP1 require its intrinsic SUMO-SIM regulatory axis. These findings provide new insights into the multi-contextual functions of RAD51AP1 within the ALT mechanism and regulation of TERRA.
DOI: 10.17632/vpnzvwyrvs
title: Exploring Self-Determination Theory through Mathematical Modelling

description: This code generates three sets of data representing different mathematical models of autonomy, competence, and relatedness over a specified time interval.

Linear Model: The linear functions for autonomy, competence, and relatedness depict a steady increase over time. Each function follows a straight line with a positive slope, indicating a linear relationship between time and satisfaction level for each psychological need.
Exponential Model: The exponential functions for autonomy, competence, and relatedness exhibit exponential growth patterns. As time progresses, the satisfaction level for each need increases at an accelerating rate, resulting in a curve that steepens over time.
Logistic Growth Model: The logistic growth functions for autonomy, competence, and relatedness represent a sigmoidal curve, characterized by an initial rapid growth phase followed by a gradual approach towards a saturation point. These functions reflect the idea that psychological needs may experience rapid development initially but eventually reach a limit as they approach their maximum satisfaction levels.
The plotted graphs visually represent the evolution of autonomy, competence, and relatedness according to each mathematical model. The x-axis represents time, while the y-axis represents the satisfaction level of each psychological need. The legend in each plot identifies which curve corresponds to autonomy, competence, or relatedness.

Overall, this code provides a visual comparison of different models of Self-Determination Theory, offering insights into how these psychological needs may evolve over time according to various mathematical assumptions.
DOI: 10.17632/xjmfz3zh2t
title: Source data (respiration-body)

description: The results of body ownership and locations sense.
DOI: 10.17632/xpkg7msyg6
title: Supplemental Material - Word choice in patient reviews: An analysis of the nonspecific language used to describe dermatologists 

description: Paper Title: Word choice in patient reviews: An analysis of the nonspecific language used to describe dermatologists.

Supplemental material includes demographic data of the dermatologists included in the paper subdivided by sex, race, and ethnicity. Additionally, it is organized based on the institution the dermatologists were employed.
DOI: 10.17632/yc2nbffdtf
title: Data for: Rarefied Gas Transport in Heterogeneous Shale Matrix Using a Practical Apparent Permeability Model and Fuzzy Statistical Method

description: mass flux ratio data vs Knudsen number
DOI: 10.17632/8n8k3c7s9w
title: Solid-Liquid-Gas-Like phase transition in electric field driven dense granular media

description: This dataset supports the article "Solid-Liquid-Gas-Like Phase Transition in Electric Field Driven Dense Granular Media". The data are provided in txt.
DOI: 10.17632/rvc7jrvh57
title: LINF_330005100

description: mitoribosomal protein uS10m
Leishmania infantum (strain JPCM5)
DOI: 10.17632/t2mp4f5fcw
title: MiTAPH (mitochondrial method study)

description: Variation in mitochondrial respiration in human adipose tissue
DOI: 10.17632/c6x4cmv59k
title: LDHU3_18.1590

description: ttaggg binding factor | TRF; Leishmania donovani (HU3 strain)