cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15656471
title: QuRE Dataset

description: Please cite this dataset as: Femmer, H., Houdek, F., Unterbusch, M., & Vogelsang, A. (2025, September). Description and Comparative Analysis of QuRE: A New Industrial Requirements Quality Dataset. In 2025 IEEE 33rd International Requirements Engineering Conference Workshops (REW) (pp. 23–29).

The paper describing the dataset can be found here: https://ieeexplore.ieee.org/abstract/document/11190221

 

This record contains the dataset (QuRE.csv) and replication package (QuRE-analysis-main.zip) associated with the paper "Description and Comparative Analysis of QuRE: A New Industrial Requirements Quality Dataset."

The QuRE (Quality in Requirements) dataset consists of 2,111 industrial requirements, annotated through a real-world quality review process conducted over several years. The dataset has been used extensively in an industrial context and is now released to the research community to support empirical studies on requirements quality.

This version (1.0.1) corrects a previous issue in which the file 1_QuRE_description.ipynb was empty.

The accompanying replication package includes descriptive statistics, comparative analyses with existing and synthetic requirements datasets, and additional material to facilitate reuse and validation.
DOI: 10.5281/zenodo.16049822
title: QuRE Dataset

description: Please cite this dataset as: Femmer, H., Houdek, F., Unterbusch, M., & Vogelsang, A. (2025, September). Description and Comparative Analysis of QuRE: A New Industrial Requirements Quality Dataset. In 2025 IEEE 33rd International Requirements Engineering Conference Workshops (REW) (pp. 23–29).

The paper describing the dataset can be found here: https://ieeexplore.ieee.org/abstract/document/11190221

 

This record contains the dataset (QuRE.csv) and replication package (QuRE-analysis-main.zip) associated with the paper "Description and Comparative Analysis of QuRE: A New Industrial Requirements Quality Dataset."

The QuRE (Quality in Requirements) dataset consists of 2,111 industrial requirements, annotated through a real-world quality review process conducted over several years. The dataset has been used extensively in an industrial context and is now released to the research community to support empirical studies on requirements quality.

This version (1.0.1) corrects a previous issue in which the file 1_QuRE_description.ipynb was empty.

The accompanying replication package includes descriptive statistics, comparative analyses with existing and synthetic requirements datasets, and additional material to facilitate reuse and validation.
DOI: 10.15468/dl.x7vhc9
title: Occurrence Download

description: A dataset containing 17712034 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "InstitutionKey is not null",
 "CollectionKey is not null"
 ]
 },
 "BasisOfRecord is one of (Specimen, Fossil, Material sample, Living Specimen)",
 "PublishingCountry is United Kingdom of Great Britain and Northern Ireland"
 ]
}

 The dataset includes 17712034 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002552-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q2wp7s
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Peltogyne catingae glabra"
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002583-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jwv45
title: Occurrence Download

description: A dataset containing 17712034 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "InstitutionKey is not null",
 "CollectionKey is not null"
 ]
 },
 "BasisOfRecord is one of (Specimen, Fossil, Material sample, Living Specimen)",
 "PublishingCountry is United Kingdom of Great Britain and Northern Ireland"
 ]
}

 The dataset includes 17712034 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002548-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.an3fbk
title: Occurrence Download

description: A dataset containing 322 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Agalychnis lemur"
 ]
}

 The dataset includes 322 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002584-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5m32np8k
title: MassIVE MSV000099645 - XIAMENUNIVERSITY-QIUYAN-MS17-17S-17-Methylincisterol (CKJ-2204)
title: 17S-17-Methylincisterol is a compound with distinct chemical characteristics, having a relative molecular mass of 346.
DOI: 10.6084/m9.figshare.29973850
title: Data for: "Tetrafunctional Cyclobutanes Tune Toughness via Network Strand Continuity"

description: Data files associated with, "Tetrafunctional Cyclobutanes Tune Toughness via Network Strand Continuity."
DOI: 10.6084/m9.figshare.29973850.v1
title: Data for: "Tetrafunctional Cyclobutanes Tune Toughness via Network Strand Continuity"

description: Data files associated with, "Tetrafunctional Cyclobutanes Tune Toughness via Network Strand Continuity."
DOI: 10.17026/ar/vwozn1
title: Archeologisch Bureauonderzoek netversterking plangebied Oldeberkoop, gemeenten Ooststellingwerf en Weststellingwerf

description: Qterra B.V. (“opdrachtgever”) heeft T&A Survey (“T&A”) opdracht verleend voor het uitvoeren van een archeologisch bureauonderzoek in het kader van het project netversterking plangebied Oldeberkoop, gemeenten Ooststellingwerf en Weststellingwerf.
DOI: 10.15468/dl.3wr8wq
title: Occurrence Download

description: A dataset containing 8512 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation)",
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepus granatensis",
 "Year 2000-2025"
 ]
}

 The dataset includes 8512 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002586-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4y8xw5
title: Occurrence Download

description: A dataset containing 53744 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Northern Gulf Fauna Survey"
 ]
}

 The dataset includes 53744 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002578-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/ba5c4882-7e64-4f22-b359-5240f6231fa7.v2
title: Code underlying publication: "Regional dissection of subpolar North Atlantic overturning reveals complex spatial heterogeneity indicative of governing processes"

description: Collection of analysis routines and plotting helpers that accompany the manuscript "Regional dissection of subpolar North Atlantic overturning reveals complex spatial heterogeneity indicative of governing processes", submitted to Journal of Physical Oceanography in 2025. All functions are implemented using xarray, numpy, scipy and matplotlib. The file can be executed as a script to reproduce all figures included in the manuscript. All modules necessary to run are mentioned in the first section of the code. Any units follow the SI convention unless otherwise noted.
DOI: 10.15468/dl.ay4nzv
title: Occurrence Download

description: A dataset containing 731 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Symplocos lucida"
 ]
}

 The dataset includes 731 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002588-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30454787
title: Planilha de Lucro

description: Planilha de finanças.
DOI: 10.6084/m9.figshare.30454787.v1
title: Planilha de Lucro

description: Planilha de finanças.
DOI: 10.5281/zenodo.17405602
title: Oxycodone intervention causes immediate shift in microbiota composition and fermentation activity in healthy humans

description: Opioid-induced bowel dysfunction (OIBD) is a significant clinical challenge associated with opioid therapy for acute and chronic pain management. This study investigates the impact of oxycodone treatment on gut microbiome structure and function, focusing on microbial diversity, taxonomic composition, and short-chain fatty acid (SCFA) production. Healthy participants in a cross-over study received placebo and oxycodone treatments, and microbial community structure was analysed using 16S rRNA gene amplicon sequencing and shotgun metagenomics (EudraCT: 2013-001540-60).

Results revealed significant reductions in microbial richness and evenness in oxycodone-treated participants, with altered taxonomic composition, including increased abundance of Akkermansia muciniphila. Functional analysis identified changes in SCFA production pathways, with elevated concentrations of acetate, butyrate, and propionate in oxycodone-treated samples. Canonical correspondence analysis (CCA) confirmed treatment-induced shifts in microbial community clustering.

This study highlights the potential role of the gut microbiome in the pathophysiology of OIBD, providing insights into microbial biomarkers and functional pathways affected by opioid therapy. Findings underscore the need for microbiome-targeted interventions to mitigate the gastrointestinal side effects of opioid use.

 

DATA: Based on the 16S rRNA gene amplicon data (European Nucleotide Archive (ENA) accession number PRJEB96047), samples from the fifth day of each treatment period from three participants receiving placebo in the first treatment period and oxycodone in the second treatment period were chosen for metagenomic sequencing and prepared using the Native Barcoding Kit 24 V14 (Oxford Nanopore Technologies, United Kingdom) following the manufacturer's protocol. The six samples were equimolarly pooled into two pools, each containing three libraries and sequenced in parallel on two PromethION R.10.4.1 flow cells (Oxford Nanopore Technologies, United Kingdom) for 72 hours.

This upload contains the binned metagenomes including metadata.
DOI: 10.5281/zenodo.17405603
title: Oxycodone intervention causes immediate shift in microbiota composition and fermentation activity in healthy humans

description: Opioid-induced bowel dysfunction (OIBD) is a significant clinical challenge associated with opioid therapy for acute and chronic pain management. This study investigates the impact of oxycodone treatment on gut microbiome structure and function, focusing on microbial diversity, taxonomic composition, and short-chain fatty acid (SCFA) production. Healthy participants in a cross-over study received placebo and oxycodone treatments, and microbial community structure was analysed using 16S rRNA gene amplicon sequencing and shotgun metagenomics (EudraCT: 2013-001540-60).

Results revealed significant reductions in microbial richness and evenness in oxycodone-treated participants, with altered taxonomic composition, including increased abundance of Akkermansia muciniphila. Functional analysis identified changes in SCFA production pathways, with elevated concentrations of acetate, butyrate, and propionate in oxycodone-treated samples. Canonical correspondence analysis (CCA) confirmed treatment-induced shifts in microbial community clustering.

This study highlights the potential role of the gut microbiome in the pathophysiology of OIBD, providing insights into microbial biomarkers and functional pathways affected by opioid therapy. Findings underscore the need for microbiome-targeted interventions to mitigate the gastrointestinal side effects of opioid use.

 

DATA: Based on the 16S rRNA gene amplicon data (European Nucleotide Archive (ENA) accession number PRJEB96047), samples from the fifth day of each treatment period from three participants receiving placebo in the first treatment period and oxycodone in the second treatment period were chosen for metagenomic sequencing and prepared using the Native Barcoding Kit 24 V14 (Oxford Nanopore Technologies, United Kingdom) following the manufacturer's protocol. The six samples were equimolarly pooled into two pools, each containing three libraries and sequenced in parallel on two PromethION R.10.4.1 flow cells (Oxford Nanopore Technologies, United Kingdom) for 72 hours.

This upload contains the binned metagenomes including metadata.
DOI: 10.3929/ethz-b-000574061
title: Extended Data for "Transparent sunlight-activated antifogging metamaterials"
DOI: 10.15468/dl.vqsunm
title: Occurrence Download

description: A dataset containing 15380 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Leontopodium nivale alpinum"
 ]
}

 The dataset includes 15380 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002589-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17452856
title: Pharmacology of psychotropic drugs
DOI: 10.5281/zenodo.17452855
title: Pharmacology of psychotropic drugs
DOI: 10.17026/ar/zvscx8
title: Archeologisch Bureauonderzoek netversterking Ameland west, Hollum, Ballum en Nes, gemeente Ameland

description: In opdracht van Qterra BV heeft T&A Survey te Amsterdam in april 2025 een archeologisch bureauonderzoek uitgevoerd. Het betreft geplande werkzaamheden op locatie Ameland west, locaties Hollum, Ballum en Nes. In het kader van de netversterking zal binnen het plangebied een nieuwe kabel worden gelegd. Gedeeltelijk worden kabels ook uitgenomen. Daarbij wordt uitsluitend in open ontgraving gewerkt. Persingen en HDD-boringen zijn niet gepland. Het tracé heeft een lengte van 20 km.
DOI: 10.5281/zenodo.15364101
title: Raw data for the manuscript: Sublethal Effects of Microplastics Sourced from Polypropylene Agricultural Plastics on Four Soil Invertebrate Species
DOI: 10.5281/zenodo.15364100
title: Raw data for the manuscript: Sublethal Effects of Microplastics Sourced from Polypropylene Agricultural Plastics on Four Soil Invertebrate Species
DOI: 10.15468/dl.anxaau
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendrocnide luzonensis"
 ]
}

 The dataset includes 83 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002591-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13984897
title: Magnetic fabric data in the Central Sichuan Basin, South China

description: Table S1 shows the summary of magnetic scalar and directional data in paleogeographic coordinate system along the transect AA’ across the Central Sichuan basin. For this study, a total of 337 standard oriented rock samples were collected from 29 sites within the Triassic-Cretaceous sediments for room-temperature magnetic fabric measurements along a ~210 km-long transect from the Longquan Shan fault to the Huaying Shan fault across the Central Sichuan basin using an electricity-powered portable drill.
DOI: 10.5281/zenodo.17396773
title: Magnetic fabric data in the Central Sichuan Basin, South China

description: Table S1 shows the summary of magnetic scalar and directional data in paleogeographic coordinate system along the transect AA’ across the Central Sichuan basin. For this study, a total of 337 standard oriented rock samples were collected from 29 sites within the Triassic-Cretaceous sediments for room-temperature magnetic fabric measurements along a ~210 km-long transect from the Longquan Shan fault to the Huaying Shan fault across the Central Sichuan basin using an electricity-powered portable drill.
DOI: 10.15468/dl.jrbzmt
title: Occurrence Download

description: A dataset containing 105801 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carcharhinus leucas",
 "HasCoordinate is true",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Material citation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Occurrence evidence",
 "BasisOfRecord is Specimen"
 ]
 },
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 105801 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002514-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f64q7h
title: Occurrence Download

description: A dataset containing 4977 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Pyrgus andromedae"
 ]
}

 The dataset includes 4977 records from 137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002592-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/vc62vx
title: Archeologisch Bureauonderzoek netversterking Ameland oost, Nes en Buren, gemeente Ameland

description: Qterra B.V. (“opdrachtgever”) heeft T&A Survey (“T&A”) op 21-03-2025 schriftelijk opdracht verleend voor het uitvoeren van een archeologisch bureauonderzoek. Het plangebied ligt in en rondom de dorpen Nes en Buren in de volgende straten: Ballumerweg, Verdekspad, Achterdijken, Reeweg, Hoogte Eggenweg, Bureweg, Vrijewilpad, Noordwal, Paasduinweg, Klein Vaarwaterweg, Strandweg en Zwarteweg. De opdrachtgever is voornemens nieuwe kabels aan te leggen en oude kabels te verwijderen.
DOI: 10.5281/zenodo.15206129
title: Mechanistic Insights into the Dry Oxidation of Amorphous Silicon Nitride: A DFT Study

description: This repository contains the library of structures generated and used for our study "Mechanistic Insights into the Dry Oxidation of Amorphous Silicon Nitride: A DFT Study" (https://doi.org/10.1039/D5TC03484A). It contains the following ASE databases: 



Oi_HSE.db with all structures and lattice parameters of the oxygen interstitials,

ON_HSE.db with all structures and lattice parameters of the oxygen substitutions,

Ni_HSE.db with all structures and lattice parameters of the nitrogen interstitials,

NEB.tar.gz with ASE databases of all individual NEB paths. The naming convention follows Figure 6 in the main article: NEB-1_a12 is path 1 for reaction pathway a step 1->2.

CP2K_Build_Input_Data Metadata and version of the cp2k software package (https://doi.org/10.1063/5.0007045) with the non-standard settings (like functional, basis sets, cut-offs, SCF settings). Default settings, like optimization algorithms, print commands, etc., are not listed for readability. It cannot be directly executed, but sections can be used with their own minimal cp2k example.
DOI: 10.5281/zenodo.15206130
title: Mechanistic Insights into the Dry Oxidation of Amorphous Silicon Nitride: A DFT Study

description: This repository contains the library of structures generated and used for our study "Mechanistic Insights into the Dry Oxidation of Amorphous Silicon Nitride: A DFT Study" (https://doi.org/10.1039/D5TC03484A). It contains the following ASE databases: 



Oi_HSE.db with all structures and lattice parameters of the oxygen interstitials,

ON_HSE.db with all structures and lattice parameters of the oxygen substitutions,

Ni_HSE.db with all structures and lattice parameters of the nitrogen interstitials,

NEB.tar.gz with ASE databases of all individual NEB paths. The naming convention follows Figure 6 in the main article: NEB-1_a12 is path 1 for reaction pathway a step 1->2.

CP2K_Build_Input_Data Metadata and version of the cp2k software package (https://doi.org/10.1063/5.0007045) with the non-standard settings (like functional, basis sets, cut-offs, SCF settings). Default settings, like optimization algorithms, print commands, etc., are not listed for readability. It cannot be directly executed, but sections can be used with their own minimal cp2k example.
DOI: 10.6084/m9.figshare.28399830
title: ESRRA (estrogen related receptor, alpha) induces ribosomal protein RPLP1-mediated adaptive hepatic translation during prolonged starvation

description: Protein translation is an energy-intensive ribosome-driven process that is reduced during nutrient scarcity to conserve cellular resources. During prolonged starvation, cells selectively translate specific proteins to enhance their survival (adaptive translation); however, this process is poorly understood. Accordingly, we analyzed protein translation and mRNA transcription by multiple methods <i>in vitro</i> and <i>in vivo</i> to investigate adaptive hepatic translation during starvation. While acute starvation suppressed protein translation in general, proteomic analysis showed that prolonged starvation selectively induced translation of lysosome and autolysosome proteins. Significantly, the expression of the orphan nuclear receptor, ESRRA (estrogen related receptor, alpha) increased during prolonged starvation and served as a master regulator of this adaptive translation by transcriptionally stimulating <i>Rplp1</i> (ribosomal protein lateral stalk subunit P1) gene expression. Overexpression or siRNA knockdown of <i>Esrra in vitro</i> or <i>in vivo</i> led to parallel changes in <i>Rplp1</i> gene expression, lysosome and macroautophagy/autophagy protein translation, and autophagy activity. Remarkably, we have found that ESRRA had dual functions by not only regulating transcription but also controlling adaptive translation via the ESRRA-RPLP1-lysosome-autophagy pathway during prolonged starvation.