cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.18739/a21n7xn9q
title: Dye 3 trapped gas isotopic analyses covering abrupt warming episodes during last glacial period

description: Gas analyses were measured to reconstruct the 15Nitrogen/14Nitrogen (d15N) anomaly associated with the abrupt warming episodes better known as the Dansgaard-Oeschger (DO) events. In addition to the d15N analyses, we measured the elemental composition of Oxygen, Nitrogen and Argon in order to assess the magnitude of gas loss from the core which was drilled in 1981. The Dye 3 d15N data exhibit larger excursions than d15N data from any other ice core (Greenland or Antarctica). Taken at face value, larger d15N excursions imply larger abrupt temperature increases during the warming phases of the DO events.
DOI: 10.18739/a2c824f12
title: Elemental and isotopic composition of oxygen (O2) and nitrogen (N2) in the Renland Ice Cap (RECAP) ice core, 2018.

description: This proposal seeks to drill, analyze, and interpret a new ice core from the Renland Ice Cap (RECAP) on the eastern coast of Greenland. The project is collaborative between US researchers (T. Sowers, Penn State and J. White, Univ. Colorado, this proposal) and researchers in Denmark’s Center for Ice and Climate (led by B. Vinther) and Alfred Wegener Institute in Bremerhaven, Germany (led by S. Kipfsthul). US efforts described here will focus on gas concentrations and gas isotopes (Sowers) and ice isotopes (White). Primary objectives of this proposal are: 1) link the recent, rapid warming seen in Greenland over the past decade to the baseline record of the past few centuries, as well as the broader Holocene record; 2) provide, for the first time, high-quality records of gases and gas isotopes throughout the Holocene from a Greenland core, and test current theories about the evolution of greenhouse gases in the Holocene and the impact of humans on that evolution; 3) provide, for the first time, a record of ice isotopes at their highest possible resolution available in the ice record, which we hope will provide a high resolution record of Holocene sea ice near eastern Greenland, as well as a history of climate in this region going back into the last interglacial period.
DOI: 10.24432/c5gp7s
title: Census Income
DOI: 10.24432/c5j590
title: Page Blocks Classification
DOI: 10.25493/zk52-e1b
title: Morphological data of human neocortical pyramidal neurons (v1.1) (v1.1)

description: To populate models of synapses, neurons and networks of neurons in the human brain with accurate morphological and physiological parameters of human neurons, it is important to provide physiological morphologies and neuronal recordings of corresponding neuron types. Data from neuronal recordings are being exchanged continuously between Partner within HBP (Mansvelder; VU, Segev; HUJI). The reference data sets here represent digitally reconstructed neocortical pyramidal neurons with matching physiological data, provided by Mansvelder and used by Segev to model single neuron properties. Also morphologies and physiologies of synaptically connected neuron pairs have been exchanged. Using feature extraction, active properties of dendrites and axons of different types of neurons are currently being established (Eyal et al, 2014).
DOI: 10.48670/moi-00019
title: Global ocean biogeochemistry hindcast
DOI: 10.5281/zenodo.10604602
title: Data for "A deamination-driven biocatalytic cascade for the synthesis of ribose-1-phosphate"

description: This externally hosted dataset is for our work "A deamination-driven biocatalytic cascade for the synthesis of ribose-1-phosphate". It contains raw MS and NMR data and source data for all corresponding figures (when applicable) in the main manuscript and SI. 

The .zip file contains all three data sets (MS, NMR, and source data).

This work builds on our previously published biocatalytic synthesis for ribose-1-phosphate (https://doi.org/10.1016/j.mcat.2018.07.028).
DOI: 10.5281/zenodo.10820750
title: Spherical harmonic models of the shape of the Moon (principal axis coordinate system) [LOLA]

description: This archive contains four spherical harmonic models of the shape of the Moon in a principal axis coordinate system, truncated at different maximum spherical harmonic degrees. The highest resolution model has a maximum spherical harmonic degree of 5759, which was generated from a lunar shape model sampled at 64 pixels per degree.

The data used to generate these models are from the LOLA instrument on the Lunar Reconaissance Orbiter, as found in the file ldem_64_pa.img on NASA's PDS website. This image file was first converted to netcdf format using the generic-mapping-tools function xyz2grd, and the resulting gridline-registered netcdf file was read into the pyshtools software and expanded into spherical harmonics using the function SHCoeffs.expand(). The spherical harmonic functions were chosen to be "4pi" normalized and to exclude the Condon-Shortley phase factor of (-1)m. The units of the coefficients are meters.

The four files in this archive are



Moon_LOLA_shape_pa_5759.bshc.gz

Moon_LOLA_shape_pa_2879.bshc.gz

Moon_LOLA_shape_pa_1439.bshc.gz

Moon_LOLA_shape_pa_719.bshc.gz


The numbers 5759, 2879, 1439, and 719 in the filename refer to the maximum spherical harmonic degree of file, which corresponds to effective spatial resolutions of 64, 32, 16, and 8 pixels per degree, respectively. The files are stored in the binary "bshc" format as described in the pyshtools documentation and are furthermore compressed using gzip. The lower resolution models were generated by truncating the spherical harmonic coefficients of the highest resolution model.

This shape model uses the same coordinate system as most lunar gravity models. The principal axis coordinate system differs from the more common mean Earth/polar axis system by about 1 km at the equator. For a mean Earth/polar axis model, use Spherical harmonic models of the shape of the Moon.
DOI: 10.5281/zenodo.11461487
title: Warming could shift the phenological responses of benthic microalgae in temperate intertidal zones

description: Intertidal mudflats colonized by sediment-dwelling microphytobenthos deliver a wide range of ecosystem services. Here we simulate the response of microphytobenthos exposed to changes in light, temperature, and sea level conditions on a temperate tidal mudflat located along the French Atlantic coast in Northwestern Europe predicted by the Intergovernmental Panel on Climate Change. Without sea level rise, microphytobenthos benefit from the balancing effect of net primary production fluctuations, experiencing an increase in winter and a decrease in summer. Under the worst emissions scenario, microphytobenthos bloom up to 14 days earlier in spring and 5 days later in fall, thereby extending the low-level microphytobenthos biomass period by an additional 3 weeks in summer. Sea level rise reduces light exposure leading to a pronounced decline in microphytobenthos under the medium-low emissions and worst emissions scenarios. We provide evidence that the anticipated warmer climate and sea level rise will have an impact on microphytobenthos, potentially triggering cascading effects across the entire food web and disrupting ecosystem services.
DOI: 10.5281/zenodo.12683973
title: Data and scripts for the article entitled "Heatwaves may trigger unexpected surge in aerosol and ozone precursor emissions from sedges in urban landscapes"

description: The package includes the data and scripts for generating the figures for the paper entitled "Heatwaves may trigger unexpected surge in aerosol and ozone precursor emissions from sedges in urban landscapes".
DOI: 10.5281/zenodo.13907999
title: Dataset from the article "A comparative analysis between two flax varieties indicates lignan-mediated salt stress adaptiveness"

description: This is a collection of raw data of the independent variables from the original research article “A comparative analysis between two flax varieties indicates lignan-mediated salt stress adaptiveness”.

 

The file contents and descriptions are as follows:



Biochemical Data.xlsx. This file contains the data of SOD, CAT, APX, GPOX, ROS, MDA, Proline, DPPH antioxidants, polyphenols, and phenolic acid assays.

Genomic Data.xlsx. This file contains the Cq values of Cyklophilin, ETIF5A, microRNA 168a, microRNA 399g, and microRNA 828a obtained using the two-tailed qPCR assay.

Morphological Data.xlsx. This file contains data on shoot-root length, root diameter, root volume, root branching, shoot-root weight, leaf count, and leaf relative water content assays.
DOI: 10.5281/zenodo.4705424
title: Coaxial Octocopter Open Data With Digicam - IGN Calibration 2

description: The data set originate from a series of flights conducted with coaxial octocopter carrying high-quality small camera and navigation sensors. This data was previously used in several peer-reviewed publications and will also be used in ISPRS workshop on dynamic networks given during the 2021 ISPRS Congress. This is part of a larger series of data that will be released gradually after incorporating user's feedback (e.g., on formats, description,etc.). The data set contains the sensor measurements from Camera and the calibration details.
DOI: 10.5281/zenodo.5775519
title: Transnational Ageing Survey 2020

description: Retirement years are often years of change. With increasing life expectancy, retirement is no longer a phase of immobility. New technologies and faster transports have made international mobility easier and as a result, families are often dispersed across countries. In normal times, retirees could therefore be more connected to the world outside, travel more or even settle in a different country than Switzerland.<br> To provide a better understanding of international mobility linked to the retirement of people who live or lived in Switzerland, the NCCR – on the move conducts the Transnational-Ageing Surveys. The first Transnational-Ageing Survey was conducted in the first half of 2020 providing valuable data for improving the quality of life of retirees who live at least part of the year in Switzerland. Both Swiss and foreign nationals of least 55 years old were invited to participate in the survey.<br> Participants are mainly asked questions about their life in Switzerland, their past international mobility, their present travels to other countries and their current or future retirement plans. Other topics include family configuration in Switzerland and abroad, health and well-being and overall living conditions. Codebook along DDI standard in pdf and xml formats, statistical dataset in .por format.
DOI: 10.5883/bold:ads7117
title: Overview of Barcode Index Number - BOLD:ADS7117

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.6084/m9.figshare.20977582
title: Temperature-growth relationships Arctic soil bacterial communities - Cardinal points

description: Cardinal points of the temperature-growth relationships estimated for the soil bacterial communities of 12 arctic sampling sites.
DOI: 10.6084/m9.figshare.26968966
title: Supplementary Material for: Transfusion risk in open, laparoscopic and robotic-assisted surgery: A Propensity Score Matched Case-Control Study Across Surgical Disciplines

description: Introduction: Robotic-assisted surgery is increasingly performed in various surgical disciplines demonstrating improved oncological and functional outcomes compared to conventional surgery.
Problem/objective: Unclear is how robotic-assisted surgery affects perioperative anemia and the need for blood products.
Methods: In this case-control study 15,009 matched patient pairs undergoing urological, visceral or thoracic surgery were included. Pairwise comparisons between robotic-assisted surgery, laparoscopic surgery and open surgery were performed with propensity score matching.
Main results and conclusions: Robotic-assisted surgery compared to open surgery was associated with a risk reduction of allogeneic red blood cell transfusion by RR 0.32 (95% CI 0.27-0.37) and a limited reduction of perioperative hemoglobin (Perioperative hemoglobin difference of 0.40 g/dl, 95% CI 0.31-0.49). Robotic-assisted surgery was associated with a shorter length of hospital stay by 4.29 days (95% CI 3.74-4.84). Compared to laparoscopic surgery, robotic-assisted surgery had no significant effect on red blood cell transfusions (RR 0.94, 95% CI 0.75-1.18), perioperative hemoglobin (0.27 g/dl, 95% CI 0.16-0.38), or length of hospital stay 0.53 days (95% CI -0.14- 1.19).
Implications: Robotic-assisted and laparoscopic procedures are associated with reduced blood transfusions compared to open surgery and, thus the advancement of minimally-invasive procedures constitutes an important measure to improve patient outcomes.
DOI: 10.6084/m9.figshare.27255333
title: Supplementary Material for: Predictive accuracy of clinicians estimates of death and recovery after acute intracerebral hemorrhage: pre-specified analysis in INTERACT3 study

description: Introduction: Accurately predicting a patient’s prognosis is an important component of decision-making in intracerebral hemorrhage (ICH). We aimed to determine clinicians’ ability to predict survival, functional recovery, and return to premorbid activities in patients with ICH.
Methods: Pre-specified secondary analysis of the third INTEnsive care bundle with blood pressure Reduction in Acute Cerebral hemorrhage Trial (INTERACT3), an international, multicenter, stepped-wedge cluster randomized controlled trial. Clinician perspectives on prognosis were collected at hospital admission and Day 7 (or before discharge). Prognosis questions were the likelihood of (i) survival at 48 hours and 6 months, (ii) favorable functional outcome (recovery walking and self-care) and (iii) return to usual activities at 6 months. Clinician predictions were compared with actual outcomes. 
Results: Most clinician participants were from neurosurgery (75%) with a median of 8 working years (IQR 5-14) of experience. Of the 6305 randomized patients who survived 48 hours, 213 (3.4%) were predicted to die (positive predictive value [PPV] 0.99, 95% confidence interval [CI] 0.99-0.99). Of 5435 patients who survived 6 months, 209 (3.8%) were predicted to die (PPV 0.93, 95% CI 0.92-0.93). Predictions on favorable functional outcome (PPV 0.54, 95% CI 0.52-0.56) and satisfied ability to return to usual activities (PPV 0.50, 95% CI 0.49-0.52) were poor. Prediction accuracy varied by working years and region of practice.
Conclusions: In patients with ICH, clinician estimates of death are very good but conversely they are poor in predicting higher levels of functional recovery and activities.
DOI: 10.6084/m9.figshare.27255417
title: Supplementary Material for: Perceptions and responses to diseases among patients with inflammatory bowel disease: text-mining analysis of posts on a Japanese patient community website

description: Introduction: Patients with inflammatory bowel disease (IBD) are increasingly using online platforms to communicate with other patients and healthcare professionals seeking disease-related information and support. Free-text posts on these platforms could provide insights into patients’ everyday lives, which could help to improve patient care. In this proof-of-concept study, we applied text-mining to extract patient needs from free-text posts on a community forum in Japan, and holistically visualized the patients’ perceptions and their connections, and explored the patient characteristic-dependent trends in the use of words.
Methods: Free-text posts written between May 11, 2020 and May 31, 2022 on the community forum were retrieved and subjected to text-mining analysis. Trends in the use of words were extracted from the posts for correspondence and co-occurrence network analyses using KH Coder open-source text-mining software.
Results: Seventy-four posts were analyzed. Using text mining methods, we successfully extracted and visualized a variety of patient concerns and their connections. The correspondence and co-occurrence analyses revealed patient segment-dependent trends in the use of words. For example, patients with a disease duration of ≤5 yrs were more likely to use words related to emotions or their desire to change or quit their job, such as ‘anxiety’ and ‘resignation.’ Patients with a disease duration of &gt;10 yrs were more likely to use words showing that they are finding ways to live with or accept their disease, and are getting used to the lifestyle but some patients continued to experience worsening disease.
Conclusions: We found that free texts posted on an IBD community forum can be a useful source of information to capture the wide variety of thoughts of patients. Text mining procedures can help to visualize the relative importance of the topics identified from free text posts. Our findings of this proof-of-concept study will be useful for generating new hypotheses to better understand and address the needs of patients with IBD.
DOI: 10.6084/m9.figshare.27261744
title: Supplementary Material for: Perceived Stress, Hair Cortisol and Hair Cortisone in Relation to Appetite-Regulating Hormones in Patients with Obesity

description: Introduction: Stress predicts unhealthy eating, obesity, and metabolic deterioration, likely mediated by altered levels of appetite- and metabolism-regulating hormones. Yet, evidence regarding the association between long-term stress and levels of appetite-regulating hormones in humans is lacking. 
Methods: We included 65 patients with obesity (44 women) to investigate the cross-sectional association of biological stress (scalp hair cortisol and cortisone) and psychological stress (Perceived Stress Scale) with overnight-fasted serum levels of the hormonal appetite regulators leptin, adiponectin, insulin, pancreatic polypeptide, gastric-inhibitory peptide, peptide tyrosine-tyrosine, cholecystokinin and agouti-related protein, adjusted for age, sex and body-mass-index. 
Results: Hair cortisone and, in trend, hair cortisol were positively associated with cholecystokinin (p=0.003 and p=0.058, respectively). No other associations between stress measures and hormonal appetite regulators were observed.
Conclusion: Long-term biological stress, measured using scalp hair glucocorticoid levels, is associated with elevated levels of circulating cholecystokinin, indicating a link between long-term stress and hormonal appetite signaling.
DOI: 10.15468/dl.2q6yq9
title: Occurrence Download

description: A dataset containing 91089 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dianthus carthusianorum L."
 ]
}

 The dataset includes 91089 records from 688 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159445-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/5jdd74ggz8.6
title: The Moderating Role of OLA on The Relationship Between FC and SAT

description: The questionnaires were distributed among 460 undergraduate students who study at the 4 universities in Saudi Arabia. The usable data were 417 cases for 3 variables related to the Flipped classroom, Students' Satisfaction and online learning anxiety.
DOI: 10.17632/wmwt7s2d8v.1
title: Medical Data Models

description: collection of medical data models from https://medical-data-models.org approximately 685,000 annotated data elements from &gt;24,000 data models
DOI: 10.18739/a2v698d8z
title: The Greenland spatial fingerprint of Dansgaard-Oeschger events in observations and models, 2018-2023

description: Pleistocene Ice Ages display abrupt Dansgaard-Oeschger (DO) climate oscillations that provide prime examples of Earth System tipping points – abrupt transition that may result in irreversible change. Greenland ice cores provide key records of DO climate variability, but gas-calibrated estimates of the temperature change magnitudes have been limited to central and northwest Greenland. We combine new and existing records of surface temperature, Oxygen-18 (18O), deuterium excess, and accumulation rates, to create a multi-proxy “fingerprint” of the DO impact on Greenland. We use a series of idealized simulations with such models to identify regions of the North Atlantic that are critical in explaining DO variability. In our experiments, wintertime sea-ice cover in the subpolar gyre is both a sufficient and a necessary condition to explain the DO impact on Greenland. This contrasts with the more common suggestion that the Nordic Seas are the nexus of DO activity.
DOI: 10.26190/unsworks/30420
title: Simulated ocean oxygenation during the interglacials MIS 5e and MIS 9e

description: NC files containing 100-year mean of main variables. This dataset includes 100-year averaged main variables for LIG, MIS9e and PI simulations formatted in netcdf files. The variables are: - detrital organic carbon concentration, - insolation flux, - dissolved o2 concentration, - potential temperature, - precipitation, - salinity and - sea water age since surface contact. PI variables are CMIP-formatted, while LIG and MIS9e variables are raw. Thickness and area of ocean grid cell are also available for each simulation.
description: ACCESS-ESM1.5 model simulations.
DOI: 10.5281/zenodo.10848514
title: Point locations for spatial and morphological analyses of barchans in swarms

description: This dataset contains the long-lat coordinates of seven points on ~6000 barchans located in six swarms.

 

Four of the locations are on Earth (three in the Tarfaya region of the Western Sahara, one in Mauritania).

The other two swarms are from high latitudes of the northern hemisphere of Mars.

 

In each location between 850 and 1112 barchans were measured.

 

The measurements were carried out manually by Dominic T Robson and Andreas CW Baas according to the method described in

Robson, D. T., Annibale, A., & Baas, A. C.W. (2022). Reproducing size distributions of swarms of barchan dunes on Mars and Earth using a mean-field model. Physica A: Statistical Mechanics and its Applications, 606, 128042.

 

The included metadata file lists the copyrights and dates (DD/MM/YYYY) for the imagery used, all imagery was accessed through Google Earth.  

 

The metadata file also includes descriptions of the format of the data.  The data themselves are provided in separate comma delimited files for each location.  Only the bedforms identified as barchans are included although other bedforms in the locations were also measured (see Robson et al. Physica A (2022)).

 

Using the seven points recorded for each dune it is possible to calculate:

Body length

Total length

Horn lengths

Total width

Horn-to-horn width

Port flank width

Starboard flank width

Slipface length

Dune orientation

 

The area of the polygons formed by the points also provides an estimate for the basal area of the dune though it is not a perfect match.

 

We hope that these data will be of use to those seeking to study the morphology, size, asymmetry, and spatial distribution of barchans in swarms.

 

Dominic T Robson and Andreas CW Baas.