cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5gs5p
title: MassIVE MSV000083558 - CatScott Amanita toxins 031219
title: Using immuno-affinity chromotagraphy to concentrate amatoxin-like peptides from the fly agaric, Amanita muscaria.
DOI: 10.5523/bris.2iw9uz9kakurk2brsd3koror01
title: Data from Surface Tensions of Picoliter Droplets with Sub-Millisecond Surface Age

description: This data set provides the data underlying the figures in our publication "Surface Tensions of Picoliter Droplets with Sub-Millisecond Surface Age", Journal of Physical Chemistry A, 2019.
DOI: 10.15139/s3/x6eumf
title: Vision Zero: City of Philadelphia. Three-Year Action Plan (2017). Philadelphia, Pennsylvania

description: Vision Zero is a strategy to reduce all traffic fatalities and severe injuries to zero, while increasing safe, equitable, and healthy mobility for all. Vision Zero Plans help guide municipalities, counties, and other areas to address these strategies considering the local context.
DOI: 10.5281/zenodo.2591188
title: ICSE 2018 and ICPC 2019 Research Dataset on Live Programming

description: The release includes a dataset analyzed in the two following research works: 

"The Road to Live Programming: Insights From the Practice." (ICSE 2018)

Abstract: Live Programming environments allow programmers to get feedback instantly while changing software. Liveness is gaining attention among industrial and open-source communities; several IDEs offer high degrees of liveness. While several studies looked at how programmers work during software evolution tasks, none of them consider live environments. We conduct such a study based on an analysis of 17 programming sessions of practitioners using Pharo, a mature Live Programming environment. The study is complemented by a survey and subsequent analysis of 16 programming sessions in additional languages, e.g., JavaScript. We document the approaches taken by developers during their work. We find that some liveness features are extensively used, and have an impact on the way developers navigate source code and objects in their work.

"Live Programming and Software Evolution: Questions during a Programming Change Task" (ICPC 2019)

Abstract: Several studies provide the questions developers ask during software evolution tasks, providing foundations for subsequent work. Nevertheless, none of them focus on Live Programming environments that gain in popularity as they are perceived to have a positive effect on programming tasks. Studying the impact of a Live Programming environment on software development activities is thus the goal of this study.

In a partial replication of the study by Sillito et al., we conducted 17 software evolution sessions in a Live Programming environment and report 1,161 developer questions asked during these sessions. We contrast our results with the results by Sillito et al., focusing on the question occurrences, question complexity and what information participants used to gain a required knowledge. We report eight new questions and observe that the Live Programming facilities do have an impact on the way developers ask questions about source code and use tools to gain corresponding knowledge.
DOI: 10.5281/zenodo.2591374
title: PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity

description: <strong>Introduction</strong>

These are the <em>Summary Level-data</em> as presented in:

"PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity". <em>Nature Communications </em>volume 9, Article number: 2904 (2018) doi: 10.1038/s41467-018-04766-9 

If you use these data please cite the corresponding manuscript, which can be downloaded here: https://www.nature.com/articles/s41467-018-04766-9. When you have any questions or comments regarding this study or these files, please contact me via:

Jessica van Setten, PhD | <em>Department of Cardiology, University Medical Center Utrecht, Utrecht University</em> | j.vansetten [at] umcutrecht [dot] nl

 

<strong>Files and description</strong>

The file PR_interval_July2018_summary_results.txt is gzipped and contains the PR interval GWAS meta-analysis summary results of 92,000 European samples. The imputation reference panel used for most studies was HapMap2 (please note: hg18, build36). 


	<em>SNP</em> - variantID (rsID).
	<em>CHR</em> - chromosome numbers [1-22 and X].
	<em>POS</em> - base pair position, hg18 / build36.
	<em>CODED_ALLELE</em> - coded allele, <em>i.e.</em> the effect allele, as represented (and harmonized) across cohorts. Note that this is not necessarily the minor allele.
	<em>NON_CODED_ALLELE</em> - the other allele, <em>i.e.</em> the non-effect allele.
	<em>CODED_ALLELE_FREQ</em> - coded allele frequency, <em>i.e.</em> the effect allele frequency. Note that this is not necessarily the minor allele frequency.
	<em>BETA_FIXED</em> - beta from the fixed-effects model.
	<em>SE_FIXED </em>- standard error from the fixed-effects model.
	<em>P_FIXED  </em>- P-value from the fixed-effects model.
DOI: 10.5281/zenodo.2591375
title: PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity

description: <strong>Introduction</strong>

These are the <em>Summary Level-data</em> as presented in:

"PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity". <em>Nature Communications </em>volume 9, Article number: 2904 (2018) doi: 10.1038/s41467-018-04766-9 

If you use these data please cite the corresponding manuscript, which can be downloaded here: https://www.nature.com/articles/s41467-018-04766-9. When you have any questions or comments regarding this study or these files, please contact me via:

Jessica van Setten, PhD | <em>Department of Cardiology, University Medical Center Utrecht, Utrecht University</em> | j.vansetten [at] umcutrecht [dot] nl

 

<strong>Files and description</strong>

The file PR_interval_July2018_summary_results.txt is gzipped and contains the PR interval GWAS meta-analysis summary results of 92,000 European samples. The imputation reference panel used for most studies was HapMap2 (please note: hg18, build36). 


	<em>SNP</em> - variantID (rsID).
	<em>CHR</em> - chromosome numbers [1-22 and X].
	<em>POS</em> - base pair position, hg18 / build36.
	<em>CODED_ALLELE</em> - coded allele, <em>i.e.</em> the effect allele, as represented (and harmonized) across cohorts. Note that this is not necessarily the minor allele.
	<em>NON_CODED_ALLELE</em> - the other allele, <em>i.e.</em> the non-effect allele.
	<em>CODED_ALLELE_FREQ</em> - coded allele frequency, <em>i.e.</em> the effect allele frequency. Note that this is not necessarily the minor allele frequency.
	<em>BETA_FIXED</em> - beta from the fixed-effects model.
	<em>SE_FIXED </em>- standard error from the fixed-effects model.
	<em>P_FIXED  </em>- P-value from the fixed-effects model.
DOI: 10.17037/data.00001074
title: Search strategies for: "Interventions to improve drinking water supply and quality, sanitation and handwashing facilities in health care facilities, and their effect on health care-associated infections in low and middle-income countries: A systematic review and supplementary scoping review"

description: The search strategy was constructed around three concepts: [1] water, sanitation and hygiene; [2] health care facilities; and [3] low and middle income countries (the LMIC list were taken from the 2017 World Bank country classification). 

The search was limited to primary research or reviews where possible, that were published in English from 1970 to current (see database dates). It was designed for use with the following databases:
[1] OvidSP Medline (1946 to April Week 2 2018);
[2] OvidSP Embase (1947 to 2018 April 23);
[3] OvidSP Global Health (1910 to 2018 week 15);
[4] Ebsco CINAHL Plus (complete database as of 25/04/2018)
[5] Ebsco AfricaWide Information (complete database as of 25/04/2018)
[6] Web of Science Core Collection, which contains the following databases: Science Citation Index Expanded (1970-present); Social Sciences Citation Index (1970-present); Arts & Humanities Citation Index (1975-present); Conference Proceedings Citation Index-Science (1990-present); Conference Proceedings Citation Index-Social Science & Humanities (1990-present); Emerging Sources Citation Index (2015-present).Data last updated 2018/04/25
[7] Web of Science SciELO (1997 – present. Data last updated 24/04/2018).
description: An initial search strategy was constructed by a professional librarian in OvidSP Medline. Comments on the draft search strategy and results were received from the rest of the research team and incorporated into an updated search draft. The OvidSP Medline search was run across all other databases, with edits made to incorporate differences in thesaurus terms and search syntax. This process was repeated until the precision and sensitivity of the search met resource requirements. 

Search results were uploaded to EndNote X8 software and duplicates removed.
DOI: 10.5281/zenodo.2159752
title: Calibrated kinematic Ninapro hand movements data

description: The kinematic data of the Ninapro (Non Invasive Adaptive Prosthetics) database  includes calibrated kinematic data from 77 subjects, performing 40 hand movements and grasps. The whole database aims at allowing worldwide research groups to study hand kinematics. As well the dataset allows also to study the relationship between hand kinematics and muscle activity, since it is linked to sEMG datasets. The final goal of this work is to aid the progress in rehabilitation, physiotherapy, medicine, neuroscience and prosthetics. Therefore, the kinematic database improves the state of the art, being the most accurate, comprehensive and advanced reference for the largest kinematic database existing at the time of writing. <br>
<br>
<strong>Acquisition protocol</strong>:<br>
Hand kinematics was measured using a 22-sensor CyberGlove II dataglove (CyberGlove Systems LLC, www.cyberglovesystems.com). The CyberGlove is a motion capture data glove, instrumented with joint-angle measurements. It uses proprietary resistive bend-sensing technology to transform hand and finger motions into real-time digital joint-angle data.<br>
<br>
The calibrated kinematic Ninapro database includes 40 different movements of 77 intact subjects.<br>
The subjects have to repeat several movement represented by movies that are shown on the screen of a laptop.<br>
The experiment is divided in two exercises:<br>
        • Isometric, isotonic hand configurations and basic wrist movements<br>
        • Grasping and functional movements<br>
Joint angles from raw data were calculated according to a very detailed calibration protocol. The protocol was previously applied to 10 different intact subjects and consists in recording 64 different poses or guided movements to obtain the gains and also some corrections because of cross-coupling effects for specific anatomical angles.

Gracia-Ibáñez, V., Vergara, M., Buffi, J. H., Murray, W. M. & Sancho-Bru, J. L. Across-subject calibration of an instrumented glove to measure hand movement for clinical purposes. C. Comput. Methods Biomech. Biomed. Eng. 20, 587–597 (2017).<br>
<br>
<strong>Data Sets</strong>:<br>
For each subject and exercise, the database contains one file in Matlab format (www.mathworks.com) with synchronized variables. The variables included are the following ones:<br>
        • subject: subject number;<br>
        • exercise: exercise number;<br>
        • glove (22 columns): uncalibrated signal from the 22 sensors of the Cyberglove. Details on the location of the sensors are available at the link: ninapro.hevs.ch/node/123;<br>
        • angles(22 columns): calibrated signal from the 22 sensors of the Cyberglove by applying an across-subject calibration<br>
        • re-stimulus (1 column): the a-posteriori refined label of the movement;<br>
        • re-repetition (1 column): re-stimulus repetition index;<br>
        • order of angles (22 columns) : name of the angles corresponding to variable “angles”.
description: Acknowledgements to : Barbara Caputo, Claudio Castellini, Arjan Gijsberts, Anne-Gabrielle and Mittaz-Hager .
DOI: 10.5281/zenodo.2591421
title: ricklupton/uk-worldsteel-statistics: Initial release

description: Datapackage containing worldsteel statistics for the UK
DOI: 10.5281/zenodo.2591422
title: ricklupton/uk-worldsteel-statistics: Initial release

description: Datapackage containing worldsteel statistics for the UK
DOI: 10.25386/genetics.7801160.v1
title: Supplemental Material for Riabinina et al., 2019

description: Supplementary material for Riabinina et al, 2019. Contains Supplementary Figures, FIgure legends and Tables
DOI: 10.5281/zenodo.2591416
title: Dataset CMKLR1-targeting peptide tracers for PET/MR imaging of breast cancer

description: Dataset for the menuscript CMKLR1-targeting peptide tracers for PET/MR imaging of breast cancer
DOI: 10.5281/zenodo.2591417
title: Dataset CMKLR1-targeting peptide tracers for PET/MR imaging of breast cancer

description: Dataset for the menuscript CMKLR1-targeting peptide tracers for PET/MR imaging of breast cancer
DOI: 10.5281/zenodo.2591194
title: Calibration of Off-the-shelf Anisotropic Magnetoresistance Magnetometers Dataset

description: Measurement data of several digital AMR-magnetometers taken in 'Magnetsrode' Magnetic Laboratory (Braunschweig, Germany) in form of .txt files. MATLAB Code for analysis of that Data. Measurement Log for additional measurement information. Empty folders should remain as they are for MATLAB folder structure when using the provided code.
DOI: 10.5281/zenodo.2591195
title: Calibration of Off-the-shelf Anisotropic Magnetoresistance Magnetometers Dataset

description: Measurement data of several digital AMR-magnetometers taken in 'Magnetsrode' Magnetic Laboratory (Braunschweig, Germany) in form of .txt files. MATLAB Code for analysis of that Data. Measurement Log for additional measurement information. Empty folders should remain as they are for MATLAB folder structure when using the provided code.
DOI: 10.25919/5c87dcf8009b3
title: Parkes observations for project P958 semester 2018OCTS_50

description: A major breakthrough in fast radio burst (FRB) astronomy was recently made when the repeating FRB 121102 was localized to sub-arcsecond precision. The bursts were found to originate in a bright radio nebula (hypothesized to be a young supernova remnant or pulsar wind nebulae) in a distant dwarf galaxy. These dwarf galaxies are also preferential hosts to superluminous supernova and long gamma-ray bursts, and it has been therefore suggested that the source of the repeating FRB could be a young highly magnetised neutron star. While an understanding of the repeating FRB is emerging, it is still unclear what relationship it has to the rest of the population.   Over the last year searches with the Australian Square Kilometre Array Pathfinder (ASKAP) have detected 26 bursts, and over the next six month will likely detect another 12 FRBs, which  will be localized to a few arcseconds.   Here we propose to search this population for repeats.  Our comprehensive sample and a dense monitoring campaign of well localised bursts, at a fluence limit more than 60 times lower than that of their detections, will either confirm the presence of additional repeating FRBs or the uniqueness of FRB 121102 amongst the population.
DOI: 10.5281/zenodo.2591253
title: Model sets and data used in the preprint "Evaluating functional dispersal and its eco-epidemiological implications in a nest ectoparasite"

description: Model sets and data used in the preprint "Evaluating functional dispersal and its eco-epidemiological implications in a nest ectoparasite", reviewed and recommended by Peer Community In Ecology (https://dx.doi.org/10.24072/pci.ecology.100013). See preprint and supplementary materials.
DOI: 10.5281/zenodo.2591254
title: Model sets and data used in the preprint "Evaluating functional dispersal and its eco-epidemiological implications in a nest ectoparasite"

description: Model sets and data used in the preprint "Evaluating functional dispersal and its eco-epidemiological implications in a nest ectoparasite", reviewed and recommended by Peer Community In Ecology (https://dx.doi.org/10.24072/pci.ecology.100013). See preprint and supplementary materials.
DOI: 10.6073/pasta/67b21bea07c32cb90124b2148e46bf06
title: SGS-LTER Long-Term Monitoring Project: Vegetation Cover on Small Mammal Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1999 -2006, ARS Study Number 118 (Reformatted to ecocomDP Design Pattern)

description: This data package is formatted according to the "ecocomDP", a data package design pattern for ecological community surveys, and data from studies of composition and biodiversity. For more information on the ecocomDP project see https://github.com/EDIorg/ecocomDP/tree/master, or contact EDI https://environmentaldatainitiative.org.

This Level 1 data package was derived from the Level 0 data package found here: https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-sgs&identifier=140&revision=17

The abstract below was extracted from the Level 0 data package and is included for context:
DOI: 10.25345/c5c032
title: MassIVE MSV000083559 - GNPS - SEED Grant - Kim - very low birth weight infants
title: Very low birth weight infant fecal samples. Samples were extracted with ethanol and processed on a Thermo Q-exactive mass spectrometer coupled to C18 RP-UPLC for untargeted metabolomic analysis. Positive polarity acquisition of LC-MS/MS.
DOI: 10.5281/zenodo.2591589
title: Does evaluative learning depend on the statistical relationship between stimuli? On the sensitivity of evaluative cue conditioning to ecological contingencies

description: Evaluative conditioning (EC) is concerned with the transfer of valence from an unconditioned stimulus (US) to a conditioned stimulus (CS). Only recently the notion of EC was extended from individual CSs to categories of CSs that share certain cues. That research shows that a contingency implemented between a cue dimension and US valence has a direct effect on the evaluation of stimuli carrying values of this cue dimension. This phenomenon was coined “evaluative cue conditioning” (ECC). The present research tests whether ECC is sensitive to the contingency between a cue dimension and US valence. The present work thereby investigates the impact of ecological contingencies that define contingency by reference to all other CS-US pairings in the learning environment. Two experiments demonstrate that ECC effects are sensitive to the strength of the ecological contingency, suggesting that ECC is a relative phenomenon that depends on the valence of the CS-US pairings in the reference set. Moreover, these findings call for more research on the contingency sensitivity of standard EC effects using this revised definition of contingency.
description: The research reported in this paper was supported by the Ministry of Science, Research, and the Arts of the State of Baden-Württemberg and an Emmy Noether grant of the German Research Foundation (HU 1978/4-1), both awarded to the first author.
DOI: 10.5281/zenodo.2591590
title: Does evaluative learning depend on the statistical relationship between stimuli? On the sensitivity of evaluative cue conditioning to ecological contingencies

description: Evaluative conditioning (EC) is concerned with the transfer of valence from an unconditioned stimulus (US) to a conditioned stimulus (CS). Only recently the notion of EC was extended from individual CSs to categories of CSs that share certain cues. That research shows that a contingency implemented between a cue dimension and US valence has a direct effect on the evaluation of stimuli carrying values of this cue dimension. This phenomenon was coined “evaluative cue conditioning” (ECC). The present research tests whether ECC is sensitive to the contingency between a cue dimension and US valence. The present work thereby investigates the impact of ecological contingencies that define contingency by reference to all other CS-US pairings in the learning environment. Two experiments demonstrate that ECC effects are sensitive to the strength of the ecological contingency, suggesting that ECC is a relative phenomenon that depends on the valence of the CS-US pairings in the reference set. Moreover, these findings call for more research on the contingency sensitivity of standard EC effects using this revised definition of contingency.
description: The research reported in this paper was supported by the Ministry of Science, Research, and the Arts of the State of Baden-Württemberg and an Emmy Noether grant of the German Research Foundation (HU 1978/4-1), both awarded to the first author.
DOI: 10.5061/dryad.8gb1n31/1
title: Post-trial scans

description: These images show the post-trial, 3-dimensional scans of the seal skeletons which were used for analysis. Some images are focussed on points of interest to show the important injuries identified for that individual. Relation back to collision speeds and morphometric data can be made through the published manuscript which details collision speeds for each individual and a full list of pathological indicators of mortality which were identified.
DOI: 10.25919/5c8819e175dc2
title: Parkes observations for project P958 semester 2018OCTS_51

description: A major breakthrough in fast radio burst (FRB) astronomy was recently made when the repeating FRB 121102 was localized to sub-arcsecond precision. The bursts were found to originate in a bright radio nebula (hypothesized to be a young supernova remnant or pulsar wind nebulae) in a distant dwarf galaxy. These dwarf galaxies are also preferential hosts to superluminous supernova and long gamma-ray bursts, and it has been therefore suggested that the source of the repeating FRB could be a young highly magnetised neutron star. While an understanding of the repeating FRB is emerging, it is still unclear what relationship it has to the rest of the population.   Over the last year searches with the Australian Square Kilometre Array Pathfinder (ASKAP) have detected 26 bursts, and over the next six month will likely detect another 12 FRBs, which  will be localized to a few arcseconds.   Here we propose to search this population for repeats.  Our comprehensive sample and a dense monitoring campaign of well localised bursts, at a fluence limit more than 60 times lower than that of their detections, will either confirm the presence of additional repeating FRBs or the uniqueness of FRB 121102 amongst the population.
DOI: 10.5281/zenodo.2591681
title: The outcomes of carbon-oxygen white dwarfs accreting CO-rich material

description: MESA inlist associated files for The outcomes of carbon-oxygen white dwarfs accreting CO-rich material
DOI: 10.5281/zenodo.2591682
title: The outcomes of carbon-oxygen white dwarfs accreting CO-rich material

description: MESA inlist associated files for The outcomes of carbon-oxygen white dwarfs accreting CO-rich material
DOI: 10.5281/zenodo.2591686
title: Hydrogen Burning on Accreting White Dwarfs: Stability, Recurrent Novae, and the Post-nova Supersoft Phase

description: MESA inlists associated with Hydrogen Burning on Accreting White Dwarfs: Stability, Recurrent Novae, and the Post-nova Supersoft Phase
DOI: 10.5281/zenodo.2591687
title: Hydrogen Burning on Accreting White Dwarfs: Stability, Recurrent Novae, and the Post-nova Supersoft Phase

description: MESA inlists associated with Hydrogen Burning on Accreting White Dwarfs: Stability, Recurrent Novae, and the Post-nova Supersoft Phase
DOI: 10.5281/zenodo.2591697
title: On the Observability of Individual Population III Stars and Their Stellar-mass Black Hole Accretion Disks through Cluster Caustic Transits

description: MESA inlists associated with On the Observability of Individual Population III Stars and Their Stellar-mass Black Hole Accretion Disks through Cluster Caustic Transits