cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9ew2wt
title: Occurrence Download

description: A dataset containing 219789 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-57.52509 -25.24243,-57.53917 -25.23591,-57.55232 -25.23073,-57.57366 -25.2239,-57.57697 -25.21913,-57.58298 -25.22607,-57.59209 -25.24036,-57.5953 -25.24264,-57.61249 -25.24937,-57.6304 -25.25662,-57.65039 -25.26801,-57.66427 -25.27671,-57.66976 -25.28116,-57.67297 -25.28386,-57.67255 -25.291,-57.67452 -25.31161,-57.67348 -25.31741,-57.66613 -25.32869,-57.66137 -25.33543,-57.64842 -25.34858,-57.64521 -25.35127,-57.64728 -25.3581,-57.64739 -25.36214,-57.64045 -25.36535,-57.63776 -25.36483,-57.6362 -25.35748,-57.63517 -25.35065,-57.63579 -25.34889,-57.63517 -25.34433,-57.63237 -25.33988,-57.63217 -25.33625,-57.62699 -25.33273,-57.6245 -25.33139,-57.62222 -25.32704,-57.62026 -25.32548,-57.62015 -25.32269,-57.61767 -25.31741,-57.61415 -25.31264,-57.61135 -25.31668,-57.60887 -25.31824,-57.60928 -25.32238,-57.60566 -25.32341,-57.59592 -25.32963,-57.59333 -25.33366,-57.58515 -25.33843,-57.56527 -25.32528,-57.55957 -25.31958,-57.55305 -25.30902,-57.55005 -25.29359,-57.54445 -25.27474,-57.54262 -25.27437,-57.54275 -25.27285,-57.54192 -25.27088,-57.5417 -25.2695,-57.54091 -25.26891,-57.54014 -25.26773,-57.53859 -25.26501,-57.53673 -25.26162,-57.53618 -25.26028,-57.53546 -25.25818,-57.53411 -25.25525,-57.53375 -25.25222,-57.53475 -25.25114,-57.5327 -25.24786,-57.52998 -25.24669,-57.52802 -25.24392,-57.52509 -25.24243))",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 219789 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072671-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a6dnss
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pittosporum cherrieri Tirel & Veillon"
 ]
}

 The dataset includes 221 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072740-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y9upwt
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pilea squamosa C.J.Chen"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072739-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yvjf44
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phedimus yangshanicus Z.Chao"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072741-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10901700
title: Huon test data
DOI: 10.5281/zenodo.10901699
title: Huon test data
DOI: 10.15468/dl.mwsnxc
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pentanisia renifolia Verdc."
 ]
}

 The dataset includes 79 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072742-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fj2ba7
title: Occurrence Download

description: A dataset containing 336 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peucedanum vaginatum Ledeb."
 ]
}

 The dataset includes 336 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072743-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zmgbqk
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllanthus comorensis Leandri"
 ]
}

 The dataset includes 9 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072744-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7sbx8c
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pilea stapfiana Gibbs"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072746-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxdhwc
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pittosporum coccineum (Montrouz.) Beauvis."
 ]
}

 The dataset includes 190 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072745-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7qbsf
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pentanisia rubricaulis (K.Schum.) Kårehed & B.Bremer"
 ]
}

 The dataset includes 60 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072748-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgeugw
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peucedanum verticillare Spreng., 1827"
 ]
}

 The dataset includes 158 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072749-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.928xvc
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllanthus comptonii S.Moore"
 ]
}

 The dataset includes 15 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072750-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.spcxuw
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pilea stellarioides H.J.P.Winkl."
 ]
}

 The dataset includes 19 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072751-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnw6m3
title: Occurrence Download

description: A dataset containing 236 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pittosporum collinum Guillaumin"
 ]
}

 The dataset includes 236 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072752-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s5zdta
title: Occurrence Download

description: A dataset containing 498 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pentanisia schweinfurthii Hiern"
 ]
}

 The dataset includes 498 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072753-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.63973n
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peucedanum violaceum R.H.Shan & M.L.Sheh"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072755-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mapjat
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllanthus concolor (Müll.Arg.) Müll.Arg."
 ]
}

 The dataset includes 123 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072756-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnwp53
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pilea stenoneura H.J.P.Winkl."
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072757-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47g5ay
title: Occurrence Download

description: A dataset containing 563 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pittosporum confertiflorum A.Gray"
 ]
}

 The dataset includes 563 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072758-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bm56yu
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peucedanum vourinense (Leute) Hartvig"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072761-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rq73hw
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllanthus confusus Brenan"
 ]
}

 The dataset includes 62 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072762-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tszstj
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pentanisia sykesii Hutch."
 ]
}

 The dataset includes 48 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072759-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbez8a
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-100.00866425559983 19.775190838984148,-97.77078784920721 19.775190838984148,-97.77078784920721 22.013067245376764,-100.00866425559983 22.013067245376764,-100.00866425559983 19.775190838984148))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Agastache mexicana (Kunth) Lint & Epling",
 "Year 1947-2004"
 ]
}

 The dataset includes 35 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072760-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttg9ca
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pilea subcoriacea (Hand.-Mazz.) C.J.Chen"
 ]
}

 The dataset includes 66 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072763-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hhtum4
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pittosporum coriaceum Dryand. ex Aiton"
 ]
}

 The dataset includes 137 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072764-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tkgfas
title: Occurrence Download

description: A dataset containing 24285 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tordylium maximum L."
 ]
}

 The dataset includes 24285 records from 684 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072754-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k37w4r
title: Occurrence Download

description: A dataset containing 139820 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phegopteris connectilis (Michx.) Watt"
 ]
}

 The dataset includes 139820 records from 814 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072747-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.14821253
title: Additional file 3 of Systems pharmacogenomics identifies novel targets and clinically actionable therapeutics for medulloblastoma

description: Additional file 3: Supplementary Table S2. Putative drug targets and drugs in subgroup-specific networks.
DOI: 10.6084/m9.figshare.14821253.v1
title: Additional file 3 of Systems pharmacogenomics identifies novel targets and clinically actionable therapeutics for medulloblastoma

description: Additional file 3: Supplementary Table S2. Putative drug targets and drugs in subgroup-specific networks.
DOI: 10.6084/m9.figshare.14827488
title: Did the irrigation efficiency paradox manifest in Chinese mainland?

description: The
data that support the findings of the study "Did the irrigation efficiency paradox manifest in Chinese mainland?"
DOI: 10.6084/m9.figshare.23740410
title: Beta during sleep in PD Code/Data: v1.0725.2023

description:  Code and source data for the Beta-sleep paper. [uploaded in 0725.2023]
DOI: 10.6084/m9.figshare.6963281
title: Additional file 2: of Transcriptome and DNA methylome reveal insights into yield heterosis in the curds of broccoli (Brassica oleracea L var. italic)

description: Data set 1. DEGs detected by pairwise comparison in NKR-06 and two parents. Data set 2. DEGs detected by pairwise comparison in Bro-12 and two parents. Data set 3. DEGs in the hybrids compared with both parents. Data set 4. Non-additively expressed genes in two hybrid triads. Data set 5. GO functional annotation of the DEGs in the NKR-04/− 05/− 06 hybrid triad. Data set 6. GO functional annotation of the DEGs in the Bro-10/− 11/− 12 hybrid triad. Data set 7. DNA methylation of CG and CHG sites detected in the hybrid broccoli and their parents. Data set 8. Differential DNA methylation levels of CG and CHG sites in NKR-06 hybrid triad. Data set 9. Genes with different methylation levels in NKR-06 hybrid triad. Data set 10 Differential DNA methylation levels of CG and CHG sites in Bro-12 hybrid triad. Data set 11. Genes with differential methylation levels in Bro-12 hybrid triad. (ZIP 5944 kb)
DOI: 10.6084/m9.figshare.12197373.v1
title: Additional file 4 of Contrast diversity patterns and processes of microbial community assembly in a river-lake continuum across a catchment scale in northwestern China

description: Additional file 4: Table S1. The amplicon sequence variants (ASVs) table for all sample.
DOI: 10.25386/genetics.6957152
title: Supplemental Material for Hoffmann et al., 2018

description: Table S1: Ancestry association. Table S2: BMI by ethnicity/nationality for GERA. Table S3: extended novel GERA results in the replication in GIANT. Table S4: Previously known BMI loci. Table S5: SNPs GWAS significant in the meta-analysis of GERA and GIANT. Table S6: Conditional SNPs. Table S7: Sex heterogeneity test. Table S8: Age heterogeneity test. Table S9: Credible sets. Table S10: BMI-associated variants annotation. Table S11:BMI x age pairwise heritability interactions. Figure S1: Age- and sex-adjusted BMI distribution in GERA ethnicity groups. Figure S2: BMI Manhattan and Q-Q plots. Figure S3: Locus plots. Figure S4: GIANT Manhattan imputed SNPs. Figure S5: Effect size comparisons amongst GERA, GIANT, and UKB. Figure S6: dominance Q-Q plot. Figure S7: Epistasis Q-Q plot. Figure S8: Sex effect size differences. Figure S9: sex effect size differences Q-Q plot. Figure S10: Age differences Q-Q plot.
DOI: 10.6084/m9.figshare.12200006
title: RadAtlas 1.0: a knowledgebase focusing on radiation-associated genes

description: <b>Purpose:</b> Ionizing radiation has very complex biological effects, such as inducing damage to DNA and proteins, ionizing water molecules to produce toxic free radicals, and triggering genetic and somatic effects. Understanding the biomolecular response mechanism of radiation is very important for the prevention and treatment of radiation diseases. However, function information of these radiation-associated genes is hidden in numbers of scientific papers and databases, making it difficult to understand the response mechanism of ionizing radiation. <b>Materials and methods:</b> We collected radiation-associated genes by literature and database mining. Literature and database mining was performed on the basis of biomedical literature from PubMed and gene expression datasets from GEO respectively. <b>Results:</b> We built an ionizing radiation related knowledgebase RadAtlas 1.0 (http://biokb.ncpsb.org/radatlas), which contains 598 radiation-associated genes compiled from literature mining, and 611 potential radiation-associated genes collected from gene expression datasets by differential gene expression analysis. We also provide a user-friendly web interface that offers multiple search methods. <b>Conclusions:</b> RadAtlas collected a large amount of information about genes, biological processes, and pathways related to ionizing radiation. It is the first attempt to provide a comprehensive catalog of radiation-associated genes with literature evidence and potential radiation-associated genes with differential expression evidence. We believe that RadAtlas would be a helpful tool to understand the response mechanism to ionizing radiation.
DOI: 10.6084/m9.figshare.14821265.v1
title: Additional file 7 of Systems pharmacogenomics identifies novel targets and clinically actionable therapeutics for medulloblastoma

description: Additional file 7: Supplementary Table S4. Summary of mutational status in human Medulloblastoma of key CIS genes identified in the mutagenesis screen,
DOI: 10.6084/m9.figshare.14821250
title: Additional file 2 of Systems pharmacogenomics identifies novel targets and clinically actionable therapeutics for medulloblastoma

description: Additional file 2: Supplementary Table S1. Network parameters for subgroup-specific network analysis.
DOI: 10.6084/m9.figshare.20064346
title: Additional file 3 of GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species

description: Additional file 3. GenErode pipeline report for analyses of the test dataset based on the Sumatran rhinoceros reference.
DOI: 10.6084/m9.figshare.25163312.v4
title: <b>Lateef/my-repo</b>

description: The suitability of laterite for engineering constructions depends largely on the extensive examination of its compaction and strength characteristics but this is lacking these days due to their cumbersome, costly and time-consuming laboratory tests unlike index properties with cheap and simple tests. To overcome this limitation, artificial neural network (ANN), Gaussian process regression (GPR), and multilinear regression (MLR)models have been developed in this study to predict laterite compaction and strength characteristics from the index properties. To achieve this, laboratory tests were conducted on three hundred samples taken from thirty different laterite deposits within southwest, Nigeria and the experimental dataset obtained was randomly divided into modeling dataset comprising two hundred and forty data points which were used to develop the models and trialing dataset with sixty data points which were used to compare and validate the developed models. Specific gravity (SG), linear shrinkage (LS), liquid limit (LL), plasticity index (PI), and fines content (FC) were selected as the models’ predictors while maximum dry density (MDD), optimum moisture content (OMC) and unconfined compressive strength (UCS) are the targeted output. The developed models’ performances were appraised using various prediction performance metrics.
DOI: 10.6084/m9.figshare.20064343
title: Additional file 2 of GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species

description: Additional file 2. GenErode pipeline report for analyses of the test dataset based on the white rhinoceros reference.
DOI: 10.6084/m9.figshare.19540389
title: Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma

description: The transient receptor potential vanilloid (TRPV) family has been preliminarily discovered to play an important role in various cancers, including clear cell renal cell carcinoma (ccRCC), which is closely associated with immune infiltration. However, the expression and prognosis of TRPV family and tumor-infiltrating immune cells in ccRCC are obscure. This study aimed to explore the prognostic and therapeutic value of the TRPV family expression in ccRCC from the perspective of bioinformatics. We analyzed the transcriptome and clinical data of kidney renal clear cell carcinoma (KIRC) from The Cancer Genome Atlas (TCGA) database. A clustering analysis and immune infiltration analysis were conducted to investigate the influence of the TRPV family genes on ccRCC. Our study found that the TRPV family is an excellent prognostic stratification for ccRCC. Among them, TRPV3 is the most significant prognostic marker of ccRCC. In addition, we performed a drug sensitivity analysis to identify the drugs with the strongest association with TRPV3. As a result, the TRPV family, particularly TRPV3, can act as a prognostic biomarker in ccRCC to determine prognosis and levels of immune infiltration.
DOI: 10.6084/m9.figshare.20064343.v1
title: Additional file 2 of GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species

description: Additional file 2. GenErode pipeline report for analyses of the test dataset based on the white rhinoceros reference.