cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/bh2hp3j7vb
title: A Retrospective Cohort Study of Women with Breast Cancer Presenting to Hair Loss Clinic

description: Supplemental figure showing the raw data for "A Retrospective Cohort Study of Women with Breast Cancer Presenting to Hair Loss Clinic"
DOI: 10.17632/4fgcswrw3v
title: Data for: First mitochondrial genomes of true ferns allow modeling the mitogenomic inflation syndrome across all land plant lineages

description: This data repository includes scripts and supporting data sets, like mapping files from RNAseq analysis.
DOI: 10.17632/gfzppjcsjy
title: Computer vision model for sorghum aphid detection using deep learning

description: Imagery collected will be shared upon request because of limited storage capacity on the Mendeley Data cloud. The computer algorithms used in this study are attached.
DOI: 10.17632/h2vmrdz4sg
title: Complementary material

description: Additional material of the article: Photophysical study and in vitro approach against Leishmania panamensis of dicloro-5,10,15,20-tetrakis(4-bromophenyl)porphyrinato Sn(IV)
DOI: 10.17632/j3rrs59jvn
title: LINF_140016400

description: Nucleotide-binding domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/vvjhpmyxb4
title: Data for: Which bird species have gone extinct? A novel quantitative classification approach

description: Estimates of the probability of extinction for bird taxa, based on quantitative estimates of the timing and reliability of records, the timing and adequacy of surveys, and the timing, intensity and extent of threats.
DOI: 10.5281/zenodo.15232603
title: Daily Station Water Level in the Sacramento-San Joaquin Delta, 1915-2023

description: The dataset contains daily maximum and minimum water at twenty-five sites within the Sacramento-San Joaquin Delta, including newly-digitized data spanning the years 1915-1982. Quality assurance procedures and datum corrections were applied to provide time series referenced to a common geocentric datum. Data-rescue and digitization efforts extend available records by several decades, and thus  facilitate analysis of multiple interconnected processes in the Delta, including sea level rise, subsidence, tides, flood hazards, climate patterns, shoreline/habitat changes, bathymetric modifications, and water resources management. 

Version 2 presents data in an updated format displaying year, month, day, hour, minutes, corresponding daily maximum water level, data completeness,  and  year, month, day, hour, minutes, corresponding daily minimum water level, data completeness.

Additional errors in newly digitized data were also corrected.
DOI: 10.17632/z4p8d2j2rt
title: Soil Depth Map for Sri Lanka

description: Although harmonised profile data containing depth information are available, no attempt has been made to comprehensively map this important soil property across Sri Lanka. Hereby we provide the depth map resulting from the kriging map (OK), kriging variance map (OK_var) and random forest map (RFR).  
The resulting map can be used to provide essential information for environmental models that are sensitive to soils with variable depth.
DOI: 10.17632/zzpv74bz9m
title: A GPU-accelerated package for simulation of flow in nanoporous source rocks with many-body dissipative particle dynamics

description: Mesoscopic simulations of hydrocarbon flow in source shales are challenging, in part due to the heterogeneous shale pores with sizes ranging from a few nanometers to a few micrometers. Additionally, the sub-continuum fluid-fluid and fluid-solid interactions in nano- to micro-scale shale pores, which are physically and chemically sophisticated, must be captured. To address those challenges, we present a GPU-accelerated package for simulation of flow in nano- to micro-pore networks with a many-body dissipative particle dynamics (mDPD) mesoscale model. Based on a fully distributed parallel paradigm, the code offloads all intensive workloads on GPUs. Other advancements, such as smart particle packing and no-slip boundary condition in complex pore geometries, are also implemented for the construction and the simulation of the realistic shale pores from 3D nanometer-resolution stack images. Our code is validated for accuracy and compared against the CPU counterpart for speedup. In our benchmark tests, the code delivers nearly perfect strong scaling and weak scaling (with up to 512 million particles) on up to 512 K20X GPUs on Oak Ridge National Laboratory’s (ORNL) Titan supercomputer. Moreover, a single-GPU benchmark on ORNL’s SummitDev and IBM’s AC922 suggests that the host-to-device NVLink can boost performance over PCIe by a remarkable 40%. Lastly, we demonstrate, through a flow simulation in realistic shale pores, that the CPU counterpart requires 840 Power9 cores to rival the performance delivered by our package with four V100 GPUs on ORNL’s Summit architecture. This simulation package enables quick-turnaround and high-throughput mesoscopic numerical simulations for investigating complex flow phenomena in nano- to micro-porous rocks with realistic pore geometries.
DOI: 10.5281/zenodo.15226122
title: Daily Station Water Level in the Sacramento-San Joaquin Delta, 1915-2023

description: The dataset contains daily maximum and minimum water at twenty-five sites within the Sacramento-San Joaquin Delta, including newly-digitized data spanning the years 1915-1982. Quality assurance procedures and datum corrections were applied to provide time series referenced to a common geocentric datum. Data-rescue and digitization efforts extend available records by several decades, and thus  facilitate analysis of multiple interconnected processes in the Delta, including sea level rise, subsidence, tides, flood hazards, climate patterns, shoreline/habitat changes, bathymetric modifications, and water resources management. 

Version 2 presents data in an updated format displaying year, month, day, hour, minutes, corresponding daily maximum water level, data completeness,  and  year, month, day, hour, minutes, corresponding daily minimum water level, data completeness.

Additional errors in newly digitized data were also corrected.
DOI: 10.17632/vpmj48s8jf
title: Antihypertensive treatment guided by genetics: PEARL-HT, the randomized proof-of-concept trial comparing rostafuroxin with losartan

description: We compared a standard antihypertensive losartan treatment with a pharmacogenomics-guided rostafuroxin treatment in never treated
Caucasian and Chinese patients with primary hypertension. Rostafuroxin is a digitoxigenin derivative that selectively
disrupts the binding to the cSrc-SH2 domain of mutant α-adducin and of the ouabain-activated Na-K pump at 10–11 M. Of 902
patients screened, 172 were enrolled in Italy and 107 in Taiwan. After stratification for country and genetic background,
patients were randomized to rostafuroxin or losartan, being the difference in the fall in office systolic blood pressure (OSBP)
after 2-month treatment the primary endpoint. Three pharmacogenomic profiles (P) were examined, considering: P1, adding to
the gene variants included in the subsequent P2, the variants detected by post-hoc analysis of a previous trial; P2, variants of
genes encoding enzymes for endogenous ouabain (EO) synthesis (LSS and HSD3B1), EO transport (MDR1/ABCB1), adducin
(ADD1 and ADD3); P3, variants of the LSS gene only. In Caucasians, the group differences (rostafuroxin 50 μg minus losartan
50 mg in OSBP mmHg) were significant both in P2 adjusted for genetic heterogeneity (P2a) and P3 LSS rs2254524 AA [9.8
(0.6–19.0), P=0.038 and 13.4 (25.4–2.5), P =0.031, respectively]. In human H295R cells transfected with LSS A and LSS C
variants, the EO production was greater in the former (P=0.038); this difference was abolished by rostafuroxin at 10–11 M.
Chinese patients had a similar drop in OSBP to Caucasians with losartan but no change in OSBP with rostafuroxin.
DOI 10.1038/s41397-021-00214-y
DOI: 10.6084/m9.figshare.24512653.v1
title: Social context affects net impact of soil biota on plant growth

description: Dataset for Kenneth J. Oppon et al.(): Social context affects net impact of soil biota on plant growthThe "agrostis_data" file contains the data from the experiment. The "agrostis_metadata" file contains the metadata for the data file.The "published_script" R file contains all code needed to reproduce analyses and figures mentioned within the manuscript.
DOI: 10.17632/mrpw4tt7x9
title: RTEL1 helicase counteracts RAD51-mediated homologous recombination and fork reversal to safeguard replicating genomes Dixit et al.

description: Uncropped blots and microscopy images
DOI: 10.17632/wrpm4dyc2m
title: strawberry experiment data

description: The experiment was conducted in a randomized complete block design, with four replicates. Each experimental unit was composed by eight plants. The 16 treatments tested are listed in table 1. A total of 37 harvests were carried out, twice a week, during the complete maturity stage, segregating commercial from non-commercial fruits. Commercial fruits harvested in each experimental unit were weighed with the aid of a scale. Afterwards, the fruit mass per plant was calculated, dividing total mass of reaped fruits by the number of plants in the experimental units. The values of mean mass of fruits per plant (g plant-1), obtained in each harvest, was continuously accumulated for each experimental units
DOI: 10.17632/7zftc43fph
title: Interacted NiFe2O4 nanoparticles dead layer

description: Spectra and TEM
DOI: 10.17632/2kwk4pyf47
title: Multigrade teaching in schools: A Case Study of an Uruguayan Teacher

description: This dataset originates from a qualitative case study that investigates the pedagogical practices and perceptions of an experienced teacher working in multigrade preschool and primary education classrooms in Uruguay. The study aims to explore how these practices contribute to inclusive education and equity. Data were collected through three in-depth interviews with the teacher, complemented by an analysis of twelve pedagogical documents. The dataset includes thematic content analysis of the interviews and documents, revealing key insights into the teacher's innovative strategies, curricular adaptations, and classroom management techniques in response to emerging challenges. While focused on a single case, the findings highlight the potential of multigrade teaching to foster quality education and meaningful learning through authentic inclusion.
DOI: 10.17632/7pyv3ccrzt
title: Transcriptome atlas of the honeybee across development stages

description: RNAseq data across development stages of the honeybee Apis mellifera.
Samples collected:  4, 6, 8, 11, 18 days after oviposition plus three different adult honeybee castes.
DOI: 10.17632/kzpvsdjrgy
title: Raw images from "Bioorthogonal masked acylating agents for proximity-dependent RNA labeling"

description: Imaging data for probes
DOI: 10.6084/m9.figshare.25045505.v1
title: Additional file 1 of Plasma metabolic profiles predict future dementia and dementia subtypes: a prospective analysis of 274,160 participants

description: Additional file 1: Table S1. UKB Nightingale metabolite measurements and clinical parameters information. Table S2. Detailed dementia outcome definition. Table S3. All 249 metabolites baseline characters of the study participants by dementia case-control status. Table S4. Comparison of covariate distributions for 10 regions. Table S5. Results of associations between plasma metabolites and incident dementia. Table S6. Results of associations between plasma metabolites and incident dementia stratified by sex. Table S7. Results of associations between plasma metabolites and incident dementia stratified by age. Table S8. Results of associations between plasma metabolites and incident dementia stratified by APOE4 carrier status. Table S9. Results of metabolites importance ranking. Table S10. The hazard ratios of MetRS in the full cohort and subgroups. Table S11. Discriminative performance of CPH models.
DOI: 10.17632/7h9r9fgwvf
title: Roaringwaterbay_acousticmonitoring

description: C-POD data (exported as DPM) from 2020-2023 Roaringwater Bay including explanatory variables used for GAM modelling.
DOI: 10.17632/pmg34htc73
title: Финансирование инновационных компаний с учетом их характеристик на разных этапах жизненного цикла

description: В результате формирования выборки из проведенных сделок на российском рынке за период с 2019 г. по 2024 г. в рамках финансирования инновационных компаний на разных этапах жизненного цикла, а также использования регрессионного анализа с участием интегрального показателя в виде размера финансирования и несколькими объясняющими переменными было установлено, что наиболее значимыми факторами являются: число основателей, отношение к ИТ-сектору, размер выручки, ситуация на фондовом рынке, участие венчурных фондов на прошлых раундах финансирования (значимость данных факторов варьируются исходя из этапа жизненного цикла).
Полученные методологические и прикладные результаты могут быть использованы инновационными компаниями в дальнейшем в целях формирования стратегий по привлечению финансирования в создание, внедрение и последующее развитие инновационных товаров и услуг.
DOI: 10.17632/9spxxny27f
title: Dataset on effects of learning curve models on clean energy technology cost developments

description: This dataset includes input data to estimate learning-by-doing (LbD) and learning-by-researching (LbR) rates for onshore wind and solar PV in the United States. Using different learning curve approaches the simulated technology cost developments are also presented. Coefficient of determination (R square) and Root Mean Square Error (RMSE) were applied for quantification of the agreement between simulated and observed technology costs.
DOI: 10.17632/h6cj9knkw5
title: The Role of BUMDes in Sustainable Economic Development at Enrekang Regency

description: Enrekang Regency has 12 sub-districts with 112 villages in it, each village has its own potential in various sectors, especially in the agricultural
sector because it contributes 49.82 percent to economic growth in Enrekang Regency. This is what makes the local government focus its attention on efforts to increase village economic growth. The existence of Badan Usaha Milik Desa (BUMDes) is very much needed because several villages are developed and village original income is quite good because of the role of BUMDes in managing all the potential in the village. The strategic values of the program are 1) the realization of productive collective assets that are managed and utilized jointly by the community, and 2) cumulatively the regional economy can develop, where each region has a specific and unique rural economic base.
DOI: 10.17632/r4bsshkm6w
title: Development of multiple cutaneous immune-related adverse events among cancer patients after immune checkpoint blockade: Supplemental File

description: These files discuss additional methodological details and include two supplemental tables, the first summarizing cirAE characteristics in patients who developed multiple cirAEs after ICI therapy, and the second describing demographic and baseline clinical characteristics of all patients.
DOI: 10.6084/m9.figshare.1399197.v1
title: Provenance RDF Models

description: A reference data set crowdsourced from multiple data sources. Codes to generate multiple provenance RDF models are available. The sample queries for comparative analysis are also included.
DOI: 10.6084/m9.figshare.25564257.v2
title: submission manuscript for PNAS

description: This data is used for submissions to the journal Proceedings of the National Academy of Sciences of the United States of America
DOI: 10.6084/m9.figshare.28113167.v1
title: Supplementary Material for: Aortic root dilatation in an individual with 3p21.31 deletion

description: Interstitial deletions in 3p21.31 are rare and have been associated with developmental delay, intellectual disability, and facial dysmorphism. We report a 2-year-old girl with 3p21.31p14.3 deletion, aortic root dilatation, global developmental delay, hypotonia, and distinctive facial features. To our knowledge, there are no reported individuals with a 3p21.31 interstitial deletion associated with aortic root dilatation. The size of this interstitial deletion is 6.8Mb and it encompasses 120 genes. None of these genes have a known association with aortic complications. A custom gene panel of 37 genes associated with familial thoracic aortic aneurysm did not identify a known monogenic cause of aortic dilatation in this individual. This case therefore represents an expansion of the phenotype associated with 3p21.31 deletions.
DOI: 10.17632/75jjmbkft7
title: A niche driven mechanism determines response and a mutation-independent therapeutic approach for myeloid malignancies- Mosialou et al.

description: Original images of Western blot
DOI: 10.17632/pw45xp8nt9
title: Data for: Gender Gaps in Technology Diffusion

description: This is the full replication file for the study
DOI: 10.17632/np6pv4f5r5
title: The effect of artificial intelligence application on the growth of exporting firms

description: The sample of this paper is set from 2008 to 2016, and 2008 is chosen as the starting year because the “2019 China Artificial Intelligence Industry Market Outlook Research Report” shows that Chinese patents in the field of artificial intelligence began to step into the development stage after 2007 (Yao, J. et al., 2024); the cut-off year to 2016 is because one of the important sources of data in this paper, “China Customs Import and Export Trade Database” is more complete before 2016, and the data updated after 2016 has too much missing information to meet the requirements of calculating foreign value added. The sample subject selects innovative enterprises with export business, and the reason for selecting innovative enterprises is that AI, as a cutting-edge innovative technology, its application and development require enterprises to have certain technological innovation capabilities and adaptability, innovative enterprises usually have strong R&D strength and technological reserves, and they are able to accept and apply AI technology more quickly, so as to seize the first opportunity in the new round of technological revolution, and these enterprises often have more flexible organizational structures and efficient decision-making mechanisms, and are able to quickly adjust their strategies and adapt to market and technological changes in order to better cope with the complex international market environment and intense competitive pressure, and to play an exemplary and leading role; and based on the basic consensus that the number of various types of patents is used to measure corporate innovation in previous studies, this paper screens innovative enterprises based on whether they apply for patents. The annual reports of listed companies are from the Sina Finance website; the import and export data of enterprises are from the China Customs Import and Export Trade Database; other basic information about listed companies is from the Cathay Pacific CSMAR Database, and the two databases are merged by referring to the relevant merging methods of Zhang J et al. (2013).
DOI: 10.17632/rsm85skd4y
title: Data for: Optimization of Dispersed Alkaline Substrate (DAS) technology to remove sulfate and metals from Andean Acid Mine Drainages (AMD) using CaCO3-rich residues from agri-food industries and witherite (BaCO3)

description: Compilation of acid mine drainage data from rivers in Chile and Argentina
DOI: 10.17632/fhkwtyz7cz
title: The impact of virtual reality technology in the era of See & Treat hysteroscopy: A Randomized Controlled Trial.

description: To evaluate the feasibility and effectiveness of virtual reality technology in outpatient hysteroscopy for improving pain and anxiety management and promoting the diffusion of see & treat philosophy.
DOI: 10.17632/zx6k8d6xtt
title: Transcriptome_Data_CP_PDAC-CP_andPDAC

description: Transcriptome Data set (Microarray_Data) for Controls, PDAC-CP and PDAC
DOI: 10.17632/myjcs97g33
title: Neurotransmitters in ASD

description: The plasma and urine neurotransmitters of ASD and healthy controls
DOI: 10.17632/w5bxkfsj4d
title: viewSq, a Visual Molecular Dynamics (VMD) module for calculating, analyzing, and visualizing X-ray and neutron structure factors from atomistic simulations

description: viewSq is a Visual Molecular Dynamics (VMD) module for calculating structure factors (S (q)) and partial structure factors for any user-selected atomic selections (S_sel1,sel2 (q)) derived from computer simulation trajectories, as well as quantifying, analyzing, and visualizing atomic contributions to them. viewSq offers radial distribution functions (g (r)), S (q) and S_sel1,sel2 (q) with and without X-ray atomic form factors or neutron scattering lengths, partial radial distribution functions (g_sel1,sel2 (r)), as well as decompositions of S (q) and S_sel1,sel2 (q) into various positive and negative components (each of which indicate periodic atomic ordering). Additionally, viewSq plots as a function of distance r the Fourier transform summands used to transform g (r) to S (q), allowing understanding of the atom-specific distances around atomic centers that contribute to S (q), S_sel1,sel2 (q), and their various positive and negative components. viewSq will also rank atoms by their contributions to S (q), S_sel1,sel2 (q), and the positive and negative components, and uses VMD to visualize those atoms interactively. Another feature performs the same rankings for atoms within a cutoff distance of a user-selected central atom, allowing the fundamental contributions atoms make with each other to be quantified and interactively visualized. Analysis may be done for any user-selected range of wavenumber (q) for a single structure or a small ensemble of structures. viewSq’s features are illustrated by using a single frame from an MD simulation of a box of water.
DOI: 10.17632/y52ffd3xdc
title: Fish Fry Dataset (FFD): used for stocking density control and health assessment

description: This study presents a dataset of 1101 images of largemouth bass (Micropterus salmoides) fry, specifically designed for small target detection under dense scenes. Each image contains a variable number of fish fries ranging from 20 to 80 individuals. To facilitate health assessment in the aquaculture context, a small number of dead fries are also included in each image. The entire dataset is annotated with a total of 51119 live fish fry and 3586 dead ones. In addition, among the 80 images depicting high density scenarios, there is a prevalence of complex situations such as overlapping, occlusion, and adhesion, which brings challenges to the small target detection task. The dataset is annotated using the labelimg tool and converted to the COCO format. The dataset can be applied to a variety of scenarios including seedling rearing, fry purchase and sale, and survival assessment. It is also valuable for biomass estimation and aquaculture density control. In summary, this dataset provides an invaluable resource for the research community, advancing the study of fry counting and fish population health, thereby contributing to the development of intelligent aquaculture.