cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29541919.v1
title: The complete mitochondrial genome and phylogenetic analysis of a leaf insect <i>Cryptophyllium oyae</i> Cumming & Le Tirant, 2020 (Phasmatodea: Phylliidae) in China

description: Stick insects have evolved remarkable camouflage adaptations, but their geographical distribution and phylogeny remain insufficiently understood. In this study, we confirmed the presence of <i>Cryptophyllium oyae</i> Cumming and Le Tirant in China, and presented its complete mitochondrial genome (16,820 bp) for the first time. The genome consists of 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and a control region. Additionally, a phylogenetic tree using mitochondrial genomes from 51 Phasmatodea species confirmed <i>C. oyae</i> belongs to the Phylliidae clade. This study enhances taxonomic identification and provides insights for phylogenetic analysis and conservation of Phasmatodea species in future studies.
DOI: 10.6084/m9.figshare.29541919
title: The complete mitochondrial genome and phylogenetic analysis of a leaf insect <i>Cryptophyllium oyae</i> Cumming & Le Tirant, 2020 (Phasmatodea: Phylliidae) in China

description: Stick insects have evolved remarkable camouflage adaptations, but their geographical distribution and phylogeny remain insufficiently understood. In this study, we confirmed the presence of <i>Cryptophyllium oyae</i> Cumming and Le Tirant in China, and presented its complete mitochondrial genome (16,820 bp) for the first time. The genome consists of 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and a control region. Additionally, a phylogenetic tree using mitochondrial genomes from 51 Phasmatodea species confirmed <i>C. oyae</i> belongs to the Phylliidae clade. This study enhances taxonomic identification and provides insights for phylogenetic analysis and conservation of Phasmatodea species in future studies.
DOI: 10.6084/m9.figshare.29559907
title: Characterization of the complete chloroplast genome of a woody invasive species, <i>Leucaena leucocephala</i> in Korea

description: <i>Leucaena leucocephala</i> (Lam.) de Wit 1961 (Caesalpinioideae; Fabaceae) is a shrub or small tree that has various ecological and economic usefulness. Here, we sequenced the complete chloroplast genome of <i>L. leucocephala</i> and analyzed its phylogenomic position in the mimosoid clade. The chloroplast genome of <i>L. leucocephala</i> was 167,423 bp with a pair of inverted repeats of 26,058 bp, a large single-copy region of 95,915 bp, and a small single-copy region of 19,392 bp. Genome annotation predicted 114 genes, including 80 protein-coding, 30 tRNA, and four rRNA genes. The phylogenomic analyses showed that <i>Leucaena</i> was closely related to <i>Dichrostachys</i> in the core mimosoid clade.
DOI: 10.6084/m9.figshare.29559907.v1
title: Characterization of the complete chloroplast genome of a woody invasive species, <i>Leucaena leucocephala</i> in Korea

description: <i>Leucaena leucocephala</i> (Lam.) de Wit 1961 (Caesalpinioideae; Fabaceae) is a shrub or small tree that has various ecological and economic usefulness. Here, we sequenced the complete chloroplast genome of <i>L. leucocephala</i> and analyzed its phylogenomic position in the mimosoid clade. The chloroplast genome of <i>L. leucocephala</i> was 167,423 bp with a pair of inverted repeats of 26,058 bp, a large single-copy region of 95,915 bp, and a small single-copy region of 19,392 bp. Genome annotation predicted 114 genes, including 80 protein-coding, 30 tRNA, and four rRNA genes. The phylogenomic analyses showed that <i>Leucaena</i> was closely related to <i>Dichrostachys</i> in the core mimosoid clade.
DOI: 10.6084/m9.figshare.29485069
title: The complete mitochondrial genome of <i>Microphysogobio chinssuensis</i> (Cypriniformes: Gobioninae) from Shanxi Province of China

description: <i>Microphysogobio chinssuensis</i> Nichols 1926, one of the most common <i>Microphysogobio</i> species in the Yellow River Basin, is endemic to China. However, high-quality molecular data such as mitochondrial DNA, remain scare. In this study, the complete mitochondrial genome of <i>M. chinssuensis</i> protospecies collected from its type locality, Shanxi Province of China, was sequenced, assembled, and annotated. Our study not only provides essential molecular characterization of <i>M. chinssuensis</i> from its type locality, which would serve as an important reference for identification, but also would provide reliable genetic resources for further taxonomic, systematic, and genetic studies of the genus <i>Microphysogobio</i>.
DOI: 10.6084/m9.figshare.29485069.v1
title: The complete mitochondrial genome of <i>Microphysogobio chinssuensis</i> (Cypriniformes: Gobioninae) from Shanxi Province of China

description: <i>Microphysogobio chinssuensis</i> Nichols 1926, one of the most common <i>Microphysogobio</i> species in the Yellow River Basin, is endemic to China. However, high-quality molecular data such as mitochondrial DNA, remain scare. In this study, the complete mitochondrial genome of <i>M. chinssuensis</i> protospecies collected from its type locality, Shanxi Province of China, was sequenced, assembled, and annotated. Our study not only provides essential molecular characterization of <i>M. chinssuensis</i> from its type locality, which would serve as an important reference for identification, but also would provide reliable genetic resources for further taxonomic, systematic, and genetic studies of the genus <i>Microphysogobio</i>.
DOI: 10.6084/m9.figshare.29559452
title: The first complete chloroplast genome sequence of <i>Sterculia foetida</i> Linnaeus (Malvaceae) and a comparative phylogenetic analysis

description: <i>Sterculia foetida</i> L. (1753), a tree species in the family Malvaceae, is widely cultivated in tropical regions  for its applications in food, medicine, and biodiesel production. This study reports the first complete chloroplast genome sequence of <i>S. foetida</i>, which is 162,637 bp long with a GC content of 36.68%, containing a large single-copy region (91,324 bp), a small single-copy region (20,347 bp), and two inverted repeat regions (25,483 bp each). The genome encodes 130 genes: 85 protein-coding genes, eight rRNA genes, and 37 tRNA genes. Phylogenetic analysis shows <i>S. foetida</i> is closely related to <i>S. pexa</i>.
DOI: 10.6084/m9.figshare.29559452.v1
title: The first complete chloroplast genome sequence of <i>Sterculia foetida</i> Linnaeus (Malvaceae) and a comparative phylogenetic analysis

description: <i>Sterculia foetida</i> L. (1753), a tree species in the family Malvaceae, is widely cultivated in tropical regions  for its applications in food, medicine, and biodiesel production. This study reports the first complete chloroplast genome sequence of <i>S. foetida</i>, which is 162,637 bp long with a GC content of 36.68%, containing a large single-copy region (91,324 bp), a small single-copy region (20,347 bp), and two inverted repeat regions (25,483 bp each). The genome encodes 130 genes: 85 protein-coding genes, eight rRNA genes, and 37 tRNA genes. Phylogenetic analysis shows <i>S. foetida</i> is closely related to <i>S. pexa</i>.
DOI: 10.6084/m9.figshare.29581611
title: Complete chloroplast genome structural and phylogenetic analysis of <i>Physostegia virginiana</i> (L.) Benth. 1930 (Lamiaceae)

description: <i>Physostegia virginiana</i> (L.) Benth. (1930) is an ornamental plant with great potential for landscaping application and cut-flower using in China. To explore its phylogenetic position and analyze the characteristics of its chloroplast (cp) genome, this study sequenced the whole cp genome of <i>P. virginiana</i>. The results revealed that the total length of the cp genome was 152,880 bp, and the lengths of the large single-copy region (LSC) and small single-copy region (SSC) were 84,428 and 17,396 bp, respectively. The lengths of the inverted repeat regions (IRa and IRb) were both 25,528 bp. The cp genome of <i>P. virginiana</i> contains 131 coding genes, namely, 86 protein-coding genes, 37 tRNA genes and eight rRNA genes. The total GC content of the cp genome was 38.38%. The phylogenetic results revealed that <i>P. virginiana</i> was closely related to <i>Gomphostemma lucidum</i>. The results of this study provide a molecular basis for the phylogenetic localization of <i>P. virginiana</i> and basic data for its identification and resource development.
DOI: 10.6084/m9.figshare.29581611.v1
title: Complete chloroplast genome structural and phylogenetic analysis of <i>Physostegia virginiana</i> (L.) Benth. 1930 (Lamiaceae)

description: <i>Physostegia virginiana</i> (L.) Benth. (1930) is an ornamental plant with great potential for landscaping application and cut-flower using in China. To explore its phylogenetic position and analyze the characteristics of its chloroplast (cp) genome, this study sequenced the whole cp genome of <i>P. virginiana</i>. The results revealed that the total length of the cp genome was 152,880 bp, and the lengths of the large single-copy region (LSC) and small single-copy region (SSC) were 84,428 and 17,396 bp, respectively. The lengths of the inverted repeat regions (IRa and IRb) were both 25,528 bp. The cp genome of <i>P. virginiana</i> contains 131 coding genes, namely, 86 protein-coding genes, 37 tRNA genes and eight rRNA genes. The total GC content of the cp genome was 38.38%. The phylogenetic results revealed that <i>P. virginiana</i> was closely related to <i>Gomphostemma lucidum</i>. The results of this study provide a molecular basis for the phylogenetic localization of <i>P. virginiana</i> and basic data for its identification and resource development.
DOI: 10.6084/m9.figshare.29645593
title: Complete mitochondrial genome sequencing and phylogenetic analysis of the Light-vented Bulbul (<i>Pycnonotus sinensis</i>) killed by window collision in South Korea in 2023

description: The Light-vented Bulbul (<i>Pycnonotus sinensis</i>) has rapidly expanded across East Asia, particularly in South Korea since the early 2000s. This study presents the complete mitochondrial genomes of five individuals died from window collisions in Seoul. The genomes, sequenced using next-generation sequencing technology, are 16,923bp long and contain 13 protein-coding genes, 22 tRNAs, and 2 rRNAs. Phylogenetic analysis revealed that South Korean <i>P. sinensis</i> forms a monophyletic clade with <i>P. sinensis hainanus</i> from China, indicating high genetic similarity. These findings provide essential data for understanding of <i>P. sinensis</i> population structure and regional adaptation.
DOI: 10.6084/m9.figshare.29645593.v1
title: Complete mitochondrial genome sequencing and phylogenetic analysis of the Light-vented Bulbul (<i>Pycnonotus sinensis</i>) killed by window collision in South Korea in 2023

description: The Light-vented Bulbul (<i>Pycnonotus sinensis</i>) has rapidly expanded across East Asia, particularly in South Korea since the early 2000s. This study presents the complete mitochondrial genomes of five individuals died from window collisions in Seoul. The genomes, sequenced using next-generation sequencing technology, are 16,923bp long and contain 13 protein-coding genes, 22 tRNAs, and 2 rRNAs. Phylogenetic analysis revealed that South Korean <i>P. sinensis</i> forms a monophyletic clade with <i>P. sinensis hainanus</i> from China, indicating high genetic similarity. These findings provide essential data for understanding of <i>P. sinensis</i> population structure and regional adaptation.
DOI: 10.6084/m9.figshare.29545297
title: Chloroplast genome sequencing and phylogenetic analysis of <i>Brassica tournefortii</i> Gouan (Brassicaceae)

description: This study reported the chloroplast genome of <i>Brassica tournefortii</i> Gouan (Brassicaceae). The chloroplast genome was 153,167 bp, including a large single copy region of 83,247 bp, a small single copy region of 17,816 bp, and two inverted repeat regions of 26,052 bp. It contains 129 genes, comprising 84 coding sequences (CDSs), 37 tRNAs, and 8 rRNAs. Phylogenetic analysis of 78 CDSs showed <i>B. tournefortii</i> closely related to <i>B. carinata</i> A.Braun and <i>B. nigra</i> (L.) W.D.J.Koch. These findings provide essential chloroplast genome data for <i>B. tournefortii</i>, supporting research on species identification, evolutionary studies, and understanding species invasion mechanisms.
DOI: 10.6084/m9.figshare.29545297.v1
title: Chloroplast genome sequencing and phylogenetic analysis of <i>Brassica tournefortii</i> Gouan (Brassicaceae)

description: This study reported the chloroplast genome of <i>Brassica tournefortii</i> Gouan (Brassicaceae). The chloroplast genome was 153,167 bp, including a large single copy region of 83,247 bp, a small single copy region of 17,816 bp, and two inverted repeat regions of 26,052 bp. It contains 129 genes, comprising 84 coding sequences (CDSs), 37 tRNAs, and 8 rRNAs. Phylogenetic analysis of 78 CDSs showed <i>B. tournefortii</i> closely related to <i>B. carinata</i> A.Braun and <i>B. nigra</i> (L.) W.D.J.Koch. These findings provide essential chloroplast genome data for <i>B. tournefortii</i>, supporting research on species identification, evolutionary studies, and understanding species invasion mechanisms.
DOI: 10.6084/m9.figshare.29589286
title: Characterizing the complete mitogenome of <i>Heterosentis holospinus</i> Amin, Heckman & Ha, 2011 (Palaeacanthocephala: Echinorhynchida: Arhythmacanthidae) and its mitochondrial phylogeny

description: <i>Heterosentis holospinus</i> Amin, Heckman & Ha, 2011 is a parasitic acanthocephalan, with <i>Cynoglossus bilineatus</i> Lacepède, 1802 identified as a new definitive host. We sequenced and annotated its complete mitochondrial genome, which spans 16,560 bp and contains 36 genes, including 22 tRNAs, 12 PCGs and 2 rRNAs. Phylogenetic analysis supports the monophyly of <i>Heterosentis</i> and its current taxonomic status. This study enriches essential molecular data that contribute to a clearer phylogenetic framework for Acanthocephala and highlight the utility of mitochondrial genomes in resolving taxonomic relationships at both the genus and family levels.
DOI: 10.6084/m9.figshare.29589286.v1
title: Characterizing the complete mitogenome of <i>Heterosentis holospinus</i> Amin, Heckman & Ha, 2011 (Palaeacanthocephala: Echinorhynchida: Arhythmacanthidae) and its mitochondrial phylogeny

description: <i>Heterosentis holospinus</i> Amin, Heckman & Ha, 2011 is a parasitic acanthocephalan, with <i>Cynoglossus bilineatus</i> Lacepède, 1802 identified as a new definitive host. We sequenced and annotated its complete mitochondrial genome, which spans 16,560 bp and contains 36 genes, including 22 tRNAs, 12 PCGs and 2 rRNAs. Phylogenetic analysis supports the monophyly of <i>Heterosentis</i> and its current taxonomic status. This study enriches essential molecular data that contribute to a clearer phylogenetic framework for Acanthocephala and highlight the utility of mitochondrial genomes in resolving taxonomic relationships at both the genus and family levels.
DOI: 10.6084/m9.figshare.29529656
title: The complete mitochondrial genome of <i>Symplocos tanakana</i>

description: <i>Symplocos tanakana</i> Nakai (1918) is a deciduous shrub or small tree with multiple applications. It is native to China and belongs to the Symplocaceae family. This study presents the complete mitochondrial genomic sequence of <i>S. tanakana.</i> This is the first member of the Symplocaceae family for which the complete mitochondrial genomic sequence is being reported. The mitochondrial genome was assembled into a single 877,273-bp circular molecule that contains 290 open reading frames (ORFs) and 68 annotated genes, including 38 protein-coding, 3 ribosomal RNA, and 27 transfer RNA genes. Phylogenetic analysis of the mitochondrial genomes of 33 species from 17 plant families using the maximum likelihood method showed evolutionary relationships. These findings enhance our understanding of the <i>S. tanakana</i> mitochondrial genomic features and provide a basis for the development of <i>S. tanakana</i> molecular markers.
DOI: 10.6084/m9.figshare.29529656.v1
title: The complete mitochondrial genome of <i>Symplocos tanakana</i>

description: <i>Symplocos tanakana</i> Nakai (1918) is a deciduous shrub or small tree with multiple applications. It is native to China and belongs to the Symplocaceae family. This study presents the complete mitochondrial genomic sequence of <i>S. tanakana.</i> This is the first member of the Symplocaceae family for which the complete mitochondrial genomic sequence is being reported. The mitochondrial genome was assembled into a single 877,273-bp circular molecule that contains 290 open reading frames (ORFs) and 68 annotated genes, including 38 protein-coding, 3 ribosomal RNA, and 27 transfer RNA genes. Phylogenetic analysis of the mitochondrial genomes of 33 species from 17 plant families using the maximum likelihood method showed evolutionary relationships. These findings enhance our understanding of the <i>S. tanakana</i> mitochondrial genomic features and provide a basis for the development of <i>S. tanakana</i> molecular markers.
DOI: 10.15151/esrf-es-2188150495
title: RIXS on GaAs

description: We will test RIXS at the Ga K and As K edges in a GaAs crystal. The data will be used in the M.Sc. thesis of M. Hamza and it will also be excellent input for the development of first principles RIXS simulations.
DOI: 10.15468/dl.4b5b2g
title: Occurrence Download

description: A dataset containing 4401 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campylopus introflexus",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4401 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059460-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mgzbfy
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Grafisia torquata)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 106 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059461-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.auk2kc
title: Occurrence Download

description: A dataset containing 174 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silene gallica",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 174 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059462-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3xxgfq
title: Occurrence Download

description: A dataset containing 749 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silene gallica",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 749 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059463-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48623/aperta.286121
title: Increasing Depressive Symptoms Of Students In Turkey (Türkiye), 1990-2023: Effects Of Gender, Socioeconomic Status, Anxiety, And The Covid-19 Pandemic

description: The prevalence and severity of depression seem to be increasing in many countries. Students can be especially vulnerable to depression, and the COVID-19 pandemic seemed to exacerbate depression severity in many countries. We wished to quantify these increases in depression severity in an emerging and developing country, for which epidemiological data were scarce. We analysed mean Beck Depression Inventory scores, as reported for 446 samples of students in Turkey (Türkiye), in journal articles and theses published between 1990 and 2023. Mean depression scores increased by 2.64 points on average during the study period, but this increase was largely restricted to women students. Mean depression scores increased by 1.85 points when the pandemic began, but this does not account for the overall increase across the study period. The difference between women and men’s scores increased when the pandemic began, but this increase was temporary. Depression’s negative correlation with socioeconomic status, on the other hand, did not change during the study period. Depression’s positive correlation with anxiety, however, did increase. These results show that students’ depression scores can vary across time, in an emerging and developing country where this had not been thoroughly studied. However, the effects of the pandemic, though measurable, may have been less severe than many of us feared.
DOI: 10.15468/dl.m6ebqs
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silene gallica",
 "Country is Uruguay",
 "HasCoordinate is true"
 ]
}

 The dataset includes 62 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059464-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hey5cw
title: Occurrence Download

description: A dataset containing 1070 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campylopus introflexus",
 "Country is Germany",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1070 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059465-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ff62g7
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campylopus introflexus",
 "Country is Latvia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059466-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.thuske
title: Occurrence Download

description: A dataset containing 12770734 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Junco hyemalis)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 12770734 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059439-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ys7nn
title: Occurrence Download

description: A dataset containing 19728 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campylopus introflexus",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 19728 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059468-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.