cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3619223_d3
title: Additional file 3: of Integrative regression network for genomic association study

description: Genes With Node Degree 4 and above. This file provides a list of methylation and mRNA genes, those were collected from the highly connected networks (fused) of different cancer profiles. (ZIP 32Â kb)
DOI: 10.17863/cam.55898
title: Research data supporting "The effect of Al on the formation and stability of a bcc - B2 microstructure in a refractory metal high entropy superalloy system"

description: Data corresponding to the figures and tables in the associated paper. Data includes BSE SEM images, SEM EDX elemental distribution maps and SEM EDX quantitative measurements, TEM HAADF and dark field images, TEM diffraction patterns, STEM EDX elemental distribution maps, differential scanning calorimetry data.
DOI: 10.17863/cam.96455
title: Research data supporting 'Selective Functionalisation of 5-Methylcytosine by Organic Photoredox Catalysis'

description: Gaussian 16 density functional theory (DFT) calculation outputs supporting 'Selective Functionalisation of 5-Methylcytosine by Organic Photoredox Catalysis' In this study, we report a xanthone-photosensitised process that introduces a 4-pyridine modification at a C(sp3)-H bond in the methyl group of 5-methylcytosine. We propose a reaction mechanism for this type of reaction based on density functional calculations and apply transition state analysis calculations to rationalise differences in observed reaction efficiencies between cyanopyridine derivatives. The reaction is initiated by single electron oxidation of 5-methylcytosine followed by deprotonation to generate the methyl group radical. Cross coupling of the methyl radical with 4-cyanopyridine installs a 4-pyridine label at 5-methylcytosine. We present key DFT structures from the study in this dataset.
DOI: 10.17863/cam.82086
title: Research data supporting "An Accurate and Transferable Machine Learning Potential for Carbon"

description: This is a machine learning interatomic potential for carbon, using the GAP framework.
DOI: 10.17863/cam.52089
title: Research data and code supporting The interplay between adolescent friendship quality and resilient functioning following childhood and adolescent adversity

description: These data are part of the larger ROOTs dataset (N=1238) that examined risk and resilience in adolescence from age 14-17.
DOI: 10.34740/kaggle/dsv/10189628
title: World Weather Repository ( Daily Updating )
DOI: 10.17863/cam.85068
title: Research data supporting: Dielectric control of reverse intersystem crossing in thermally activated delayed fluorescence emitters

description: A Microsoft Excel file containing the data that forms the figures in the main text of the publication. The Microsoft Excel file contains the ultrafast transient absorption and photoluminescence data for TXO-TPA and 4CzIPN, presented in wavelength (nm) and time (ps). Also included is the steady state Raman and impulsive vibrational spectra of TXO-TPA and 4CzIPN at 0.5, 3, and 10 ps (in wavenumbers). The full datasets for the quantum-chemical molecular dynamics simulations of TXO-TPA are also presented. See the main manuscript for more details.
DOI: 10.6084/m9.figshare.c.3619256_d3
title: Additional file 3: of Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells

description: A table listing the gene ontology terms of the MCF-7 up-regulated genes that are on small chromosomes and are on compartment switch regions. (XLSX 5 kb)
DOI: 10.6084/m9.figshare.c.3619268_d2
title: Additional file 2: of Novel genetic risk variants for pediatric celiac disease

description: Regulome DB questioned a possible role of the variants of interest in terms of transcription factor binding sites, chromatin states, eQTLs, differentially methylated regions, validated functional SNPs and DNase sensitivity. All variants had minimum or no impact. (XLSX 3.62 mb)
DOI: 10.6084/m9.figshare.c.3619274_d1
title: MOESM2 of Microsatellite loci for Urochloa decumbens (Stapf) R.D. Webster and cross-amplification in other Urochloa species

description: Additional file 2. Magnitude of ΔK determined in STRUCTURE analysis of K, calculated following the ΔK method proposed by Evanno et al. [24].The highest ΔK value corresponds to the optimal K.
DOI: 10.6084/m9.figshare.c.3619274_d2
title: MOESM3 of Microsatellite loci for Urochloa decumbens (Stapf) R.D. Webster and cross-amplification in other Urochloa species

description: Additional file 3. Jaccard’s coefficient for 34 genotypes of Urochloa spp. evaluated using 82 microsatellite markers. Individuals are identified according to their EBC codes (Table 1).
DOI: 10.6084/m9.figshare.c.3619289_d1
title: Additional file 6: of South African HIV-1 subtype C transmitted variants with a specific V2 motif show higher dependence on Îą4Î˛7 for replication

description: Characteristics of IECs used in this study.
DOI: 10.17863/cam.72871
title: Data supporting "β-Hydroxybutyrate Accumulates in the Rat Heart during Low-Flow Ischaemia with Implications for Functional Recovery"

description: Data supporting "β-Hydroxybutyrate Accumulates in the Rat Heart during Low-Flow Ischaemia with Implications for Functional Recovery". See README file for description.
DOI: 10.6084/m9.figshare.c.3619301_d1
title: Additional file 3: Table S1. of Comparative genomics reveals Lysinibacillus sphaericus group comprises a novel species

description: TETRA, ANIb and DDH estimates. The matrices indicate the value for indices TETRA, ANIb, and ANIm, as well as DDH estimates for all the studied L. sphaericus strains. Intra species values are colored as green and interspecies values, as red. Orange color indicates the species boundary where further analyses are required. Numbers in brackets represent the nucleotides used as seed for the respective BLAST search. Threshold values were used as indicated by Rosselló-Móra and Amann [25]. (XLSX 17 kb)
DOI: 10.17863/cam.48269
title: Research data supporting "Observation of a refractory metal matrix containing Zr-Ti- rich precipitates in a Mo0.5NbTa0.5TiZr high entropy alloy"

description: SEM EDX maps, quant and BSE, TEM HAADF, STEM EDX maps and quant, Dark field and Selected area diffraction patterns as in the publication.
DOI: 10.17863/cam.35666
title: Supporting Data for "Identification of Novel Components of Target-of-Rapamycin Signaling Pathway by Network-Based Multi-Omics Integrative Analysis"

description: 1. p-values of the genes and the significantly expressed genes with their directions of regulations in response to rapamycin and caffeine 2. Core proteins of the constructed TOR signaling network 3. Annotation Collection Table (ACT) of the core proteins of TOR Signaling protein interaction network 4. Interactions of the constructed TOR signaling protein interaction network 5. Modules found by MCODE plugin of Cytoscape 6. GO Term enrichment results of the 25 modules identified by MCODE plugin of Cytoscape 7. S. Cerevisiae Receptor List 8. Yeast Transcriptional Regulatory Network 9. Key Transcription Factors that regulates a common set of significantly expressed genes in response to rapamycin and caffeine
DOI: 10.17863/cam.44407
title: Research data supporting ‘WP 10: Classification of environments of entrepreneurship: Factor analysis of Registration Sub-Districts (RSDs) in 1891’

description: This dataset contains the codes for each RSD for the 11 factor codes for entrepreneurs in England and Wales, and the 10 factor codes for employers only in England and Wales: Entrepreneurs: 1 - Commercial, professional & urban 2 - Farming, rural trades, shoes & wool 3 - Small manufacturing 4 - Dealing & retail 5 - Medium & heavy manufacturing 6 - Coal mining 7 - Cotton & waterproof goods 8 - Carriers & lodging 9 - Clothing & agricultural produce 10 - General manufacturing & ports 11 - No strong loading Employers: 1 - Retail, lodging, transport & small crafts 2 - Farming, rural, shoe & building trades 3 - Commercial & professional 4 - Tool, heavy manufacturing & household goods dealers 5 - Agricultural produce, coal & timber dealers 6 - Wool & other textiles 7 - Cotton & silk textiles 8 - Leather & wood manufacturing 9 - Coal mining 10 - No strong loading
DOI: 10.6084/m9.figshare.28023590
title: Higher proportion of high-energy lightning strokes in global high-altitude areas

description: The data provided correspond to the paper titled "Higher proportion of high-energy lightning strokes in global high-altitude areas". The Data.zip file contains three folders and one file. Within the three folders, you will find the data corresponding to the three figures presented in the paper. The file named "script.ncl" contains the codes required to process these data using NCL.
DOI: 10.17863/cam.106519
title: I-CeM Lookup Table -- Hollerith Occupation codes 1911 and 1921

description: This spreadsheet is designed to be used in conjunction with the Integrated Census Microdata (I-CeM) collection of historic census data covering the period 1851 to 1921. For further details of the I-CeM data collection, please visit the comprehensive project website at: https://www.campop.geog.cam.ac.uk/research/projects/icem/ Outline information on the I-CeM project are also provided on the README page of this spreadsheet. This file is specifically related to the I-CeM data collection variable HOLLEROCC
DOI: 10.6084/m9.figshare.c.3619355_d2
title: Additional file 6: of Derivation of consensus inactivation status for X-linked genes from genome-wide studies

description: BED file used to make a UCSC browser track of the XCI domains. This file was used to generate Fig. 4a and colors correspond to Fig. 4a. (BED 5 kb)
DOI: 10.17863/cam.50345
title: Research data supporting 'Coupled modelling of subglacial hydrology and calving-front melting at Store Glacier, West Greenland'

description: Numerical model outputs from my PhD (titled: Will fast glaciers accelerate under climate change?) and the RESPONDER project that form the basis of the figures and data in the associated publication. Data provided as .tar.gz archives containing several thousand .vtu and .pvtu files. The .pvtu and .vtu files are outputs from the numerical finite-element model, Elmer/Ice, set up to model the evolution of the subglacial hydrology of Store Glacier, a tidewater glacier in western Greenland. Information about Elmer/Ice can be found here: http://elmerice.elmerfem.org/ and I hope to have all the code I used uploaded to the main Elmer/Ice repository soon (in the meantime, please contact me if you're interested in the code). The model outputs are grouped into six .tar.gz archives, all representing three months of model time. Each archive contains three sets of files: PostCalve files are output for the ice mesh; Hydro files are outputs for the hydrology mesh (conceptually, at the base of the ice mesh) and channel files are the channel elements on the hydrology mesh (because the channels are complicated). One archive (WinterToUpload) contains the results for a representative winter scenario (no surface melt, only basal and internal melt). Two (Summer12Steady and Summer17Steady) contain results for the summers (Jun-Jul-Aug) of 2012 (high surface melt) and 2017 (low surface melt), respectively, forced using constant average surface melt derived from the regional climate model, RACMO. Two more (Summer12Daily and Summer17Daily) model the same periods, but use daily-resolution surface melt from RACMO to explore whether this more realistic method of forcing really impacts the model results (in some ways it does, in other, it doesn't). Finally, Summer12MT is identical to Summer12Steady, except the mesh resolution is coarser, to check whether that significantly impacts the results (it doesn't). When looking at the results in Paraview, just load in the .pvtu files - they reference the appropriate .vtu files. You only need to worry about individual .vtu files if you want to look at one specific mesh partition at one timestep.
DOI: 10.6084/m9.figshare.c.3619361_d2
title: Additional file 2: of Prognostic relevance of autophagy-related markers LC3, p62/sequestosome 1, Beclin-1 and ULK1 in colorectal cancer patients with respect to KRAS mutational status

description: Raw data converted from SPSS to Excel. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3619343_d3
title: Additional file 3 of A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin

description: Table S3. Classification Test Non-Binders. Set of non-binders in the test set including computational analysis. The peptides in Column A represent the test data set, sorted by Column B. The highest measured values (Max IVIG) are given in Column B, in Column C (mBuffer) the mean of secondary antibody control, and in Column D (mIVIG) the mean of all IVIG measures. In Column E, the sum of all computational methods are summed up whose predictions were correct as outlined in the remaining columns, as in Additional file 2: Table S2. (XLS 1218 kb)
DOI: 10.6084/m9.figshare.c.3619343_d4
title: Additional file 1 of A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin

description: Table S1. Binding training data. Training set of measured binding affinities. This collection of peptides was used to train the Pythia classifier. (TXT 260 kb)
DOI: 10.6084/m9.figshare.c.3619379_d1
title: Additional file 1: of Low level of MAp44, an inhibitor of the lectin complement pathway, and long-term graft and patient survival; a cohort study of 382 kidney recipients

description: Biomarkers levels in quartiles. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3619355_d5
title: Additional file 5: of Derivation of consensus inactivation status for X-linked genes from genome-wide studies

description: BED file used to make a UCSC browser track with color coded consensus XCI status calls for each gene on the X (excluding genes with no XCI status calls). This file was used to generate Fig. 4a and colors correspond to Fig. 4a. (BED 39 kb)
DOI: 10.6084/m9.figshare.c.3619343_d5
title: Additional file 2 of A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin

description: Table S2. Classification Test Binders. Set of binders in the test set including computational analysis. The peptides in Column A represent the test data set, sorted by Column B. The highest measured values (MaxIVIG) are given in Column B, in Column C (mBuffer) the mean of secondary antibody control, and in Column D (mIVIG) the mean of all IVIG measures. In Column E, the sum of all computational methods are summed up whose predictions were correct as outlined in the remaining columns, where the EL-Manzalawy, LuĹĄtrek, PWM, Pythia, Barbarini et al. [2] (Pavia), and PWM2 methods are given. (XLS 1218 kb)
DOI: 10.6084/m9.figshare.c.3619355_d6
title: Additional file 1: Table S1. of Derivation of consensus inactivation status for X-linked genes from genome-wide studies

description: Our consensus XCI status calls for all genes on the X chromosome. The consensus calls from this study are under the column labeled Balaton consensus calls. The data used for the rest of the analyses in this article are also included as columns. The second sheet has descriptions of each column. (XLSX 316 kb)
DOI: 10.17863/cam.101631
title: Research Data supporting "Comprehensive study of Raman optical response of typical substrates for thin-film growth under 633 nm and 785 nm laser excitation"

description: Names of data files correspond to the names of Figures in publication "Comprehensive Study of Raman Optical Response of Typical Substrates for Thin-Film Growth Under 633 nm and 785 nm Laser Excitation" Files: All other files contain .txt data exported from individual graphs in Figures. Please, use any of the following software to plot the data: - OriginLab (https://www.originlab.com/) - Spyder (https://www.spyder-ide.org/) ----------------------- The research project the data originated from: Raman spectroscopy is one of the most efficient and non-destructive techniques for characterising materials. However, it is challenging to analyse thin films using Raman spectroscopy since the substrates beneath the thin film often obscures its optical response. Here, we evaluate the suitability of fourteen commonly employed single-crystal substrates for Raman spectroscopy of thin films using 633 nm and 785 nm laser excitation systems. We determine the optimal wavenumber ranges for thin-film characterization by identifying the most prominent Raman peaks and their relative intensities for each substrate and across substrates. In addition, we compare the intensity of background signals across substrates, which is essential for establishing their applicability for Raman detection in thin films. The substrates LaAlO3 and Al2O3 have the largest free spectral range for both laser systems, while Al2O3 has the lowest background levels, according to our findings. In contrast, the substrates SrTiO3 and Nb:SrTiO3 have the narrowest free spectral range, while GdScO3, NGO and MgO have the highest background levels, making them unsuitable for optical investigations. The dataset usage instructions: Names of data files correspond to the names of Figures whose data they contain. Optical data for Figures 1-3, S1-S5 can be processed using any software for data analysis, such as Spyder (https://www.spyder-ide.org/). All optical data was pre-processed with background subtraction and baseline corrected (multi-polynomial fit of degree 2). The data collection methods: The optical and electrical data (files for Figures 1-3, S1- S5) were collected using self-made setup as described in: Materials and Methods, section 2 and supplementary data. The setup was operated with self-written software in Python 3. All data were collected at the University of Cambridge, Department of Materials Science & Metallurgy.
DOI: 10.17863/cam.37021
title: Research data supporting [Scalable electrochromic nano-pixels using plasmonics]

description: Fig. 1. Electrochromic nanoparticle-on-mirror (eNPoM) nano-pixel. Fig. 2. Electrically-driven optical switching of single eNPoMs. Fig. 3. eNPoMs with varying gaps. Fig. 4. Electrical and optical switching dynamics of eNPoM nano-pixels. Fig. 5. Scalable color generation performance of eNPoM metasurfaces. Fig. 6. Optical dynamics of electrochromic plasmonic nanoparticles.
DOI: 10.17863/cam.61810
title: Dataset for: First experience in clinical application of hyperspectral endoscopy for evaluation of colonic polyps

description: All code and processed images used to prepare the figures associated with this manuscript. Raw endoscopy videos can be obtained on request from the corresponding author.
DOI: 10.15468/dl.s5qdpk
title: Occurrence Download

description: A dataset containing 201 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-3.9833 39.86531,-3.94582 39.86531,-3.94582 39.88434,-3.96935 39.88445,-3.9833 39.88434,-3.9833 39.86531))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is CC-BY 4.0"
 ]
}

 The dataset includes 201 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033189-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.43615
title: Research data supporting "Long-Wavelength Reflecting Filters Found in the Larval Retinas of One Mantis Shrimp Family (Nannosquillidae)"

description: Code used for analysis of paper characterising novel reflecting filters (intrarhabdomal structural reflectors, ISR) in stomatopod crustacean larval retinas.
DOI: 10.17863/cam.32694
title: Research data supporting "Action-Outcome Knowledge Dissociates From Behavior in Obsessive-Compulsive Disorder Following Contingency Degradation"

description: Original and unprocessed raw data is provided in support of the article " Action-Outcome Knowledge Dissociates From Behavior in Obsessive-Compulsive Disorder Following Contingency Degradation ". The article was accepted for publication in 2018 in the journal "Biological Psychiatry: Cognitive Neuroscience and Neuroimaging". The data relate to the main findings of the study originating from the contingency degradation task described in the manuscript. Electronic supporting information is available from the publisher.
DOI: 10.17863/cam.71834
title: Research data supporting "Cell wall compositions determine handedness reversal in helicoidal cellulose architectures of Pollia condensata fruits"

description: Chiral asymmetry in nature encompasses a wide range of disciplines and length-scales. While several natural biomolecules exist only with single-handedness, they can produce complex hierarchical structures with opposite chiralities. Understanding how the handedness is transferred from molecular to the mesoscopic scales is far from trivial. An intriguing example is the transfer of the handedness of helicoidal organisations of cellulose microfibrils in plant cell walls. These cellulose helicoids produce structural colours if their dimension is comparable to the wavelength of visible light. All previously reported examples of a helicoidal structure in plant are left-handed. Remarkably, in the Pollia condensata fruit both left- and right-handed helicoidal cell walls are found in neighbouring cells of the same tissue, which gives rise to an enhanced reflectance. By simultaneously studying optical and mechanical responses of cells with different handednesses, we conclude that the chirality of helicoids results from differences in cell-wall compositions. In detail, we observed that (i) light reflected from right-handed cells is red-shifted compared to light reflected from left-handed cells, (ii) right-handed cells occur more rarely than left-handed ones and (iii) right-handed cells are located mainly in regions corresponding to interlocular divisions. Finally, (iv) right-handed cells have an average lower elastic modulus compared to left-handed cells of the same colour. Our findings, combined with mechanical simulation, suggest that the different chiralities of helicoids in the cell wall may result from different amounts or compositions of hemicelluloses, in accordance with previous hypotheses on their importance in mediating chirality in helicoidal cell-wall architectures.
DOI: 10.17863/cam.111207
title: Early medieval glosses to Boethius’s De Consolatione Philosophiae

description: An edition of the complete corpus of glosses to Boethius's 6th-century Consolation of Philosophy preserved in all surviving manuscripts of the text up to 1100. This includes both marginal and interlinear annotation to copies of the text, as well examples of glosses collected on their own to create rudimentary commentary.
DOI: 10.6084/m9.figshare.c.3619418_d3
title: Additional file 6: of Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis â   a rich resource to identify new transcripts, proteins and to study gene regulation

description: Annotation file gbk. (ZIP 7457 kb)
DOI: 10.6084/m9.figshare.c.3619415_d6
title: Additional file 1: of Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC)

description: Summarized values of PredictProtein for the novel proteins and length-matched annotated proteins. (XLSX 81Â kb)
DOI: 10.6084/m9.figshare.c.3619415_d7
title: Additional file 4: of Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC)

description: Raw data of PredictProtein for all natural sequences (72 novel and 288 annotated) and their 100-times shuffled counterparts. (XLSX 16697Â kb)