cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28294805
title: Ultrafast and accurate sequence alignment and clustering of viral genomes

description: These files are associated with the publication "Ultrafast and accurate sequence alignment and clustering of viral genomes".phage-genomes.fnaComplete genome sequences of 4,244 bacteriophages in FASTA formatphage-ICTV_taxonomy.csvTaxonomic affiliations of 4,244 bacteriophages according to the ICTV taxonomyphage-genomes_simulated_mutations.csvThe expected (true) total ANI (tANI) values in the 70-100% range, derived from 10,000 pairs of bacteriophage genomes subjected to simulated mutations, including different levels of substitution, insertion, deletion, duplication, inversion, and translocation events. Mutations were introduced using Mutation-Simulator v3.0.2. Column descriptions:sample: sample IDref_id: Reference genome IDalt_id: Altered reference IDtotal_ani: True total ANI [%]ref_length: Reference genome lengthalt_length: Altered reference genome lengthsn: Substitions frequencyde: Deletions frequencyins: Insertions frequencydu: Duplications frequencyinv: Inversions frequencytl: Translocations frequencyn_sn: Substituted nucleotidesn_de: Deleted nucleotidesn_ins: Inserted nucleotidesn_du: Duplicated nucleotidesn_inv: Inverted nucleotidesn_tl: Translocated nucleotidesphage-genomes_simulated_mutations.fnaNucleotide sequences of reference and altered genomes.viruses-sample_contigs.fna94,225 viral metagenomic contigs subsampled from IMG/VR v4.1.viruses-blastn_ani.csv4,361,743 contig pairs obtained in BLASTn satisfying the threshold of ANI ≥ 95% and alignment fraction (query coverage) ≥ 85%
DOI: 10.5281/zenodo.13953069
title: Digital Orthophotos and water-land-boundaries at the Elbe eastuary (Germany), July 2022, Sat-Land-Fluss-project

description: In July 2022 we mapped the tidal area of the Elbe near Cuxhaven and Brunsbüttel. The data was gathered by UAV (Unmanned Aerial Vehicle) with a RBG camera and a PDGNSS-Rover (Precice Differential Global Navigation Satellite System) in three areas: 1) Otterndorf at low tidal level (beach area), 2) Neufelderkoog at low tidal level (wadden area), 3) Neufeld at high tidal level (flooded reed area).

For each area we provide a digital orthophoto and the correlation of the measurement timing to the local sea level. The measurements were obtained at the same time as the radar satellite Sentinel 1 crossed the area. 

The data is structured in three  zip-archives corresponding to the study areas:1) 20220712_Tnw_Otterndorf.zip: provides the time series data as comma-separated text files (CSV) provides (a) a digital orthophoto at 1,5 cm resolution, (b) an overview jpg showing of the measurement times and the local sea level, (c) timing of the UAV-flightlines and (d) two PDGNSS measurement series collected simultaneously as csv. (downloadable as 10.4 GB zip archive), 2) 20220712_Tnw_NeufelderkoogPriel.zip: provides (a) a digital orthophoto at 2 cm resolution and (b) an overview jpg showing of the measurement times and the local sea level (downloadable as 6,3 GB zip archive), 3) 20220720_Thw_Neufeld.zip: provides (a) a digital orthophoto at 2 cm resolution and (b) an overview jpg showing of the measurement times and the local sea level (downloadable as 8,4 GB zip archive).

The data is used in the frame of the project "satellite based water-land-boundary detection" (Sat-Land-Fluss), as validation for Sentinel-1 derived water-land determinations. Sat-Land-Fluss was a R&D project lasting from 2020-2024,  funded by the German Federal Ministry for Digital and Transport in the 4th project call "National Copernicus Application" (50EW2015).
DOI: 10.5281/zenodo.13953070
title: Digital Orthophotos and water-land-boundaries at the Elbe eastuary (Germany), July 2022, Sat-Land-Fluss-project

description: In July 2022 we mapped the tidal area of the Elbe near Cuxhaven and Brunsbüttel. The data was gathered by UAV (Unmanned Aerial Vehicle) with a RBG camera and a PDGNSS-Rover (Precice Differential Global Navigation Satellite System) in three areas: 1) Otterndorf at low tidal level (beach area), 2) Neufelderkoog at low tidal level (wadden area), 3) Neufeld at high tidal level (flooded reed area).

For each area we provide a digital orthophoto and the correlation of the measurement timing to the local sea level. The measurements were obtained at the same time as the radar satellite Sentinel 1 crossed the area. 

The data is structured in three  zip-archives corresponding to the study areas:1) 20220712_Tnw_Otterndorf.zip: provides the time series data as comma-separated text files (CSV) provides (a) a digital orthophoto at 1,5 cm resolution, (b) an overview jpg showing of the measurement times and the local sea level, (c) timing of the UAV-flightlines and (d) two PDGNSS measurement series collected simultaneously as csv. (downloadable as 10.4 GB zip archive), 2) 20220712_Tnw_NeufelderkoogPriel.zip: provides (a) a digital orthophoto at 2 cm resolution and (b) an overview jpg showing of the measurement times and the local sea level (downloadable as 6,3 GB zip archive), 3) 20220720_Thw_Neufeld.zip: provides (a) a digital orthophoto at 2 cm resolution and (b) an overview jpg showing of the measurement times and the local sea level (downloadable as 8,4 GB zip archive).

The data is used in the frame of the project "satellite based water-land-boundary detection" (Sat-Land-Fluss), as validation for Sentinel-1 derived water-land determinations. Sat-Land-Fluss was a R&D project lasting from 2020-2024,  funded by the German Federal Ministry for Digital and Transport in the 4th project call "National Copernicus Application" (50EW2015).
DOI: 10.15468/dl.zbeqd5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malacocottus kincaidi Gilbert & Thompson, 1905",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001574-250127130748423/datasets/export for details.
DOI: 10.15468/dl.uhp2be
title: Occurrence Download

description: A dataset containing 307143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Pl@ntNet automatically identified occurrences",
 "Country is Belgium"
 ]
}

 The dataset includes 307143 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001529-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18150/glxjco
title: Conjugation of 2-oxazoline copolymers with acyclic and macrocyclic chelating compounds of polyamino polycarboxylic structure

description: In this work, we introduce a new synthetic pathway to obtain conjugates of poly(2-oxazoline)s (POx) and chelating agents (CA), applying the triazine-based coupling compound. Conjugates based on 2-ethyl- (EtOx) and 2-(3-butenyl)-2-oxazoline (ButEnOx) copolymers coupled with acyclic and macrocyclic chelating compounds: diethylenetriaminepentaacetic acid (DTPA) or 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid (DOTA) were obtained (POx-DTPA or POx-DOTA). Nuclear magnetic resonance spectra are presented. By the modification, the ability for complexation of ions have been imparted to the macromolecules. Studies on the uptake of various cations (including these stabilizing outer membrane (OM) of Gram-negative bacteria) at different environmental pH for POx-DTPA and POx-DOTA are presented. Also, the energy dispersive X-ray (EDX) spectra and X-ray photoelectron spectra (XPS) are shown. The analysis of minimal inhibitory concentration (MIC) and minimal bactericidal concentration (MBC) with the use of Gram-negative strains E. coli and P. aeruginosa has shown that conjugates exhibit bactericidal properties. The cytometric analysis revealed permeability of bacterial OM after POx-DOTA treatment, comparable to low-molecular weight chelator EDTA known from its bactericidal properties, or even better than EDTA in case of POx-DTPA. In addition to antibacterial activity, the systems remained non-toxic to human fibroblasts in a wide range of concentrations, making them promising for further fundamental studies on antibacterial polymers.The following files are deposited in the repository: the energy dispersive X-ray (EDX) spectra of the conjugates complexed with metal ions, nuclear magnetic resonance (NMR) spectra of the conjugates, SEC chromatograms (RI and LS signal) of the conjugates, bacterial cell membrane permeability test results (RFU and Flow cytometry analysis), cytotoxicity assay results.
DOI: 10.57967/hf/4286
title: gn-humor-detection
DOI: 10.15468/dl.gseahz
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Semicossyphus reticulatus (Valenciennes, 1839)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 44 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001575-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3hzu5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cossyphus reticulatus Valenciennes, 1839",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001577-250127130748423/datasets/export for details.
DOI: 10.1594/pangaea.964596
title: Convolutional neural network training dataset and results of AWI-ICENet1 retracker

description: This data set include the simulated and corresponding reference data in binary format used for the training of the AWI-ICENet1 retracker algorithm, which is a convolutional neural network (CNN). The simulation is carried out at 1000 randomly selected locations spread over the Antarctic ice sheet. At each location a reference waveform is simulated based on the local topography. This waveform is modulated using 95 different attenuation rates ranging from 1 to 20 dB (step width 0.2 dB). Finally 45 noisy waveforms are generated from each modulated waveform. Therefore, at each location 95*40=3800 waveforms are generated. The simulated data consist of a total of 3.8 Mio waveforms. The AWI-ICENet1 retracker is applied to the full CryoSat-2 time series. Monthly elevation change is estimated for Greenland and Antarctica and compared to estimates derived from ICESat-2. Here, we provide raster data sets of the elevation change, rates of elevation change and additional parameters such as correlation with backscatter and leading edge width as netcdf files. The CryoSat-2 elevation change products of AWI-ICENet1 are estimated for the time periods: 2011-2022, 2019-2022 for Greenland and Antarctica and 2011-2014 for Greenland only and are provided as monthly gridded georeferenced netcdf files. As input to the AWI processing we used the reprocessed Baseline_E Level_1B waveform product provided by ESA. Additional we provide the ICESat-2 elevation change products for 2019-2022 for Greenland and Antarctica as monthly gridded georeferenced netcdf files which are based on the same processing strategy. As input to our processing we used the ATL06.006 ICESat-2 data product provided by NASA.
description: We provide for each of the 1000 locations 3 different binary files.The first file named as e.g. ATT_ARR_000958.bin contains the 95 attenuation settings. This is a double precision file of size 760 Byte.The second file named as e.g REF_ARR_000958.bin contains the 95 reference retracking positions. This is a double precision file of size 760 Byte.The third file named as e.g. SIM_WF_NOISE_000958.bin contains the 3800 waveforms. A single waveform consist of 128 samples. This is a floating-point precision file of size 1945600 Byte. In addition a file named RANDOM_POINT_LIST_4326.dat is provided which contains the 1000 geographic locations (Id/Longitude/Latitude). This is a double-precision binary file of size 24000 Byte.The netcdf files are self explaining and include monthly raster data sets of various variables.The projection is EPSG:3031 for Antarctica and EPSG:3413 for Greenland. Pixel resolution is 5km.
DOI: 10.21335/nmdc-1654657723
title: Svinoy transect oxygen and dissolved inorganic carbon

description: We report on a pilot study using a CO2 optode deployed on a Seaglider in the Norwegian Sea for 8 months (March to October 2014). The optode measurements required drift- and lag-correction, and in situ calibration using discrete water samples collected in the vicinity. We found the optode signal correlated better with the concentration of CO2, c(CO2), than with its partial pressure, p(CO2). Using the calibrated c(CO2) and a regional parameterisation of total alkalinity (AT) as a function of temperature and salinity, we calculated total dissolved inorganic carbon concentrations, CT, which had a standard deviation of 10 µmol kg-1 compared with direct CT measurements. The glider was also equipped with an oxygen (O2) optode. The O2 optode was drift-corrected and calibrated using a c(O2) climatology for deep samples (R2 = 0.89; RMSE = 0.009 µmol kg-1). The survey area was a source of O2 and a sink of CO2 for most of the summer. The deployment captured two different surface waters: the Norwegian Atlantic Current (NwAC) and the Norwegian Coastal Current (NCC). The NCC was characterised by lower c(O2) and CT than the NwAC, as well as lower N(O2), N(CT) and craw(Chl a). Our results show the potential of glider data to simultaneously capture time and depth-resolved variability in CT and O2.
DOI: 10.21957/hrkg-9c18
title: Deterministic ECMWF forecast data with additional precipitation flux parameters
DOI: 10.5281/zenodo.10701641
title: SDUST2020MGCR: a global marine gravity change rate model determined from multi-satellite altimeter data

description: SDUST2020MGCR.nc is the global marine gravity change rate model covering 70°S~70°N and 0°~360°E on 5′×5′ grids. The dataset contains geospatial information (latitude, longitude), SDUST2020MGCR and an attachment data (GIA MGCR).
DOI: 10.5281/zenodo.4309748
title: Marine terraces of the last interglacial period along the Pacific coast of South America (1°N-40°S)

description: This database comprises ~2,000 measurements of last interglacial marine terrace elevations along ~5,000 km of the western South American coast from northern Ecuador to south-central Chile (1°N-40°S). We used quantitatively replicable approaches constrained by previously published terrace-age estimates. Uncertainties were estimated on the basis of measurement errors and the distance from these referencing points.
DOI: 10.5281/zenodo.4683015
title: MUA PLidar and Sun Photometer Dataset for Dust-related Ice Nucleation Particle Concentration Profile

description: The polarization lidar data were saved to HDF5 format with file naming as <strong>yyyymmdd_plidar.h5</strong>. Each of the <strong>HDF5</strong> file contains the measurements at the fully day. And empty profiles were filled with NaN. The data consist of Analog data (AD) and Photon count rate data (PC) with dimension of height (2048 bins) * time (1024 profiles). The spatial and temporal resolution is 30 m and 1 min, respectively. The sun photometer AOD data were saved to .dat format with file naming as <strong>yyyymmdd.dat.</strong>
description: {"references": ["He, Y., Zhang, Y., Liu, F., Yin, Z., Yi, Y., Zhan, Y., and Yi, F.: Retrievals of dust-related particle mass and ice-nucleating particle concentration profiles with ground-based polarization lidar and sun photometer over a megacity in central China, Atmos. Meas. Tech., 14, 5939\u20135954, https://doi.org/10.5194/amt-14-5939-2021, 2021.", "He, Y., Yin, Z., Liu, F., and Yi, F.: Technical note: Identification of two ice-nucleating regimes for dust-related cirrus clouds based on the relationship between number concentrations of ice-nucleating particles and ice crystals, Atmos. Chem. Phys., 22, 13067\u201313085, https://doi.org/10.5194/acp-22-13067-2022, 2022.", "Kong, W., and Yi, F.: Convective boundary layer evolution from lidar backscatter and its relationship with surface aerosol concentration at a location of a central China megacity, Journal of Geophysical Research: Atmospheres, 2015."]}
DOI: 10.5281/zenodo.4772909
title: Data of Karhunen-Loéve (KL) ensemble generation algorithm for biogenic emissions from EURAD-IM

description: The files provided here include the input and output of the KL ensemble generation algorithm for a specific application to biogenic emissions. The data refers to the manuscript "Efficient ensemble generation for uncertain correlated parameters in atmospheric chemical models" by A.Vogel and H.Elbern which has been submitted to GMD (discussion preprint available at: https://gmd.copernicus.org/preprints/gmd-2021-26). Further information on the data can be found in the README.txt-File.
DOI: 10.5439/1482713
title: ARM: Ka-Band Scanning ARM Cloud Radar (KASACR); Vertically-Pointing Scan

description: Ka-Band Scanning ARM Cloud Radar (KASACR); Vertically-Pointing Scan
DOI: 10.5440/1781066
title: Surface Meteorology at Teller Mile 47 Watershed, Seward Peninsula, Alaska, Ongoing from 2018

description: Meteorological data are currently being collected at one location at the Teller Mile 47 (TL_MM47) Research Basin Site, Seward Peninsula (N64 58' 36.918", W166 12' 32.67", 67 meters above sea level). The site was installed and initial measurements started in September 2018 and it has operated continuously since then. The meteorological station is co-located with a continuous snow depth sensor and two soil pits for subsurface temperature and moisture measurements.These data are being collected to better understand the energy dynamics above the active layer and permafrost. They complement in-situ snow and soil measurements also at this location. The data could also be used as supporting measurements for other research and modeling activities.There are 35 comma separated value format (*.csv) files provided, where each file contains the full data for an individual parameter (e.g. air temperature at 1.5 meters above the ground surface (teller_m47_air_temperature_150cm_ags_Avg.csv) or soil temperature 20 centimeters below ground surface (teller_m47_dry_soil_pit_temperature_20cmbgs_Avg.csv)) plus the time in Universal Coordinated Time (UTC) and Alaska Standard Time (UTC time minus nine hours).The site was installed and initial measurements started in September 2018. It has been operated continuously since. Primary data gaps are due to battery failure or sensor failure. These data are being collected to better understand the surface energy dynamics above the active layer and permafrost.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a 10-year research effort (2012-2022) to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy?s Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy?s Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
DOI: 10.7488/ds/7764
title: Phenotypic and fitness consequences of plasticity in the rhythmic replication of malaria parasites.

description: The environment that parasites experience within their host changes dramatically over 24 hours. How rhythms shape host-parasite-vector interactions is poorly understood due to the challenges of disentangling the roles of rhythms of multiple interacting species in the context of the complex lifecycles of parasites. Using canonical circadian clock disrupted hosts, we probe the limits of flexibility in the rhythmic replication of malaria (Plasmodium) parasites and quantify the consequences for fitness proxies of both parasite and host. We reveal that parasites alter the duration of their replication rhythm to resonate with host rhythms that have short (21 hour) daily T-cycles as accurately as when infecting host with 24 hour cycles, but are unable to extend their replication rhythm in hosts with long (27 hour) cycles. Despite matching the period of short T-cycle hosts, parasites are unable to lock to the correct phase, resulting in lower within-host productivity and a reduction in transmission potential. However, parasites in long T-cycle hosts do not experience substantial fitness costs. Furthermore, T-cycle duration does not affect disease severity in clock disrupted hosts. Understanding the rhythmic replication of malaria parasites offers the opportunity to interfere with parasite timing to improve health and reduce transmission.
DOI: 10.5281/zenodo.4542559
title: MAPM Campaign PM Data

description: PM data from the 2019 MAPM field campaign in Christchurch. Contains data from: ODINs ES-642s For other data from the MAPM campaign see here: https://doi.org/10.5281/zenodo.4536640