cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14554824.v2
title: Pyrocystis lunula predicted transcript contigs, predicted CDS and peptide

description: Pyrocystis lunula transcript contigs and predicted peptides from de novo assembly. <br>
DOI: 10.6084/m9.figshare.21574764.v1
title: Hilsa Sad MS RAW and Results Files

description: A mass-spectrometry-based proteomic platform was employed to dissect the muscle tissue proteome collected from the riverine habitat hilsa samples.
DOI: 10.6084/m9.figshare.28120499.v1
title: Supplementary material-2025.1.14

description: This study analyzed the composition of the microbial community in raw milk and its effects on flavor compounds by comparing samples from cows raised on pasture (PXN) and in housing (HXN). In August 2023, nine raw milk samples from Holstein cows were collected from a pasture in the Xilin Gol League, Inner Mongolia, China, and labelled as the PXN group. Simultaneously, nine raw milk samples were collected from Holstein cows raised by individual farmers in the region and labelled as the HXN group.
DOI: 10.6084/m9.figshare.5144164.v1
title: Root Shoot global data individual trees

description: Dataset for the research article entitled: "Tree size and climatic water deficit control root to shoot ratio in individual trees globally" by Ledo et al, 2017 - New Phytologist<br><b><br>A global dataset of individual tree Root:Shoot values, compiled from whole-tree harvesting studies. The dataset encompasses 409 sites and a total of 3416 trees of 212 species of both above- and below-ground biomass.</b>
DOI: 10.6084/m9.figshare.12623681.v1
title: Database published in The global distribution and environmental drivers of the soil antibiotic resistome | Microbiome | Full Text

description: Database published in The global distribution and environmental drivers of the soil antibiotic resistome | Microbiome | Full Text
DOI: 10.6084/m9.figshare.24591516.v1
title: Supplementary Material for: Cardiovascular Disease Risk Scores and Incident Dementia and Cognitive Decline in Older Men and Women

description: Introduction: Risk factors for cardiovascular disease (CVD) also increase the risk of dementia. However, whether commonly used CVD risk scores are associated with dementia risk in older adults who do not have a history of CVD, and potential gender differences in this association, remains unclear. The aim of this study was to determine whether CVD risk scores are prospectively associated with cognitive decline and dementia in initially healthy older men and women. Methods: 19,114 participants from a prospective cohort of individuals aged 65+ years without known CVD or dementia at recruitment. The Atherosclerotic Cardiovascular Disease risk score (ASCVDRS), Systematic Coronary Risk Evaluation2- Older Persons (SCORE2-OP) and the Framingham risk score (FRS) were calculated at baseline. Risk of dementia (according to DSM-IV criteria) and cognitive decline (defined as a &gt;1.5 standard deviation (SD) decline in global cognition, episodic memory, psychomotor speed or verbal fluency from the previous year) were assessed using Hazard Ratio (HR). Results: Over a median follow-up of 6.4 years, 850 individuals developed dementia and 4352 cognitive decline. Men and women in the highest ASCVDRS tertile had a 41% (95%CI 1.08,1.85) and 45% (1.11,1.89) increased risk of dementia compared to the lowest tertile respectively. Likewise, men and women in the highest SCORE2-OP tertile had a 64% (1.24,2.16) and 60% (1.22,2.11) increased risk of dementia compared to the lowest tertile respectively. Findings were similar but the risk was slightly lesser when examining risk of cognitive decline for both ASCVDRS and SCORE2-OP. However, FRS was only associated with the risk of cognitive decline among women (highest vs. lowest tertiles: 1.13 [1.01-1.26]). Conclusion: These findings suggest the utility of the ASCVDRS and SCORE2-OP in clinical practice, to not only assess future risk of CVD, but also as potential early indicators of cognitive impairment, even in relatively healthy older men and women.
DOI: 10.6084/m9.figshare.23722023.v1
title: Habitat suitability correlates with mean population fitness of a threatened marsupial predator

description: Raw data used in study to correlate northern quoll habitat suitability with measures of mean population fitness.
DOI: 10.6084/m9.figshare.16529508.v1
title: The biologic data of the manuscript Near-infrared Manipulation of Multiple Neuronal Populations via Trichromatic Upconversion

description: Using multi-color visible lights for independent optogenetic manipulation of multiple neuronal populations offers the ability for sophisticated brain functions and behavior dissection. To mitigate invasive fiber insertion, infrared light excitable upconversion nanoparticles (UCNPs) with deep tissue penetration have been implemented in optogenetics. However, due to the chromatic crosstalk induced by the multiple emission peaks, conventional UCNPs or their mixture cannot independently activate multiple targeted neuronal populations. Here, we report NIR multi-color optogenetics by the well-designed trichromatic UCNPs with excitation-specific luminescence. The blue, green and red color emissions can be separately tuned by switching excitation wavelength to match respective spectral profiles of optogenetic proteins ChR2, C1V1 and ChrimsonR, which enables selective activation of three distinct neuronal populations. These files include the neuron recording, stimulation results, thermal test and the other data
DOI: 10.17028/rd.lboro.24279709.v1
title: Supplementary information files for Fate of density waves in the presence of a higher-order van Hove singularity

description: Supplementary files for article Fate of density waves in the presence of a higher-order van Hove singularityTopological transitions in electronic band structures, resulting in van Hove singularities in the density of states, can considerably affect various types of orderings in quantum materials. Regular topological transitions (of neck formation or collapse) lead to a logarithmic divergence of the electronic density of states (DOS) as a function of energy in two dimensions. In addition to the regular van Hove singularities, there are higher-order van Hove singularities (HOVHS) with a power-law divergence in DOS. By employing renormalization group techniques, we study the fate of a spin-density wave phase formed by nested parts of the Fermi surface, when a HOVHS appears in parallel. We find that the phase formation can be boosted by the presence of the singularity, with the critical temperature increasing by orders of magnitude, under certain conditions. We discuss possible applications of our findings to a range of quantum materials such as Sr<sub>3</sub>Ru<sub>2</sub>O<sub>7</sub>, Sr<sub>2</sub>RuO<sub>4</sub>, and transition metal dichalcogenides.
DOI: 10.17632/mjxnhfxr2t
title: Development of an Optimal and Efficient Solution Methodologies for Delivery Sequencing in Last Mile Delivery of LPG Cylinders in India

description: The data includes customers geocoded delivery location, delivery agents delivery sequencing decision and a complete distance matrix.
DOI: 10.17632/mjxnhfxr2t.1
title: Development of an Optimal and Efficient Solution Methodologies for Delivery Sequencing in Last Mile Delivery of LPG Cylinders in India

description: The data includes customers geocoded delivery location, delivery agents delivery sequencing decision and a complete distance matrix.
DOI: 10.6084/m9.figshare.1416249.v3
title: An examination into the extent that word of mouth has on the buying decisions of consumers with disabilities

description: The purpose of this paper is to attempt to understand how WOM affects upon people with disabilities in regards to their purchasing decisions of specialist products and services. In order to achieve this there will be an attempt to discover the importance of WOM when people with disabilities are purchasing specialist products and services, and also discovers the different ways the people who different impairments receive WOM information. The main methods employed to generate the results were: a chosen research approach of qualitative, the population in the study was selected by the non-probability sampling method called purposive sampling technique which is homogeneous sampling. The chosen data collection method was to use Facebook for asynchronous communication by e-mailing participates the interview over the platform. The chosen analytical approach was thematic analysis and then axial coding which was followed by a deductive reasoning approach was used in order to develop a hypothesis. The main themes to emerge from the data collected were: NWOM has twice the impact on consumers’ decision making process, the respondents still would possibly react negative to PWOM, WOM would have more effect than advertising, higher trust placed in friends and the existing users of products/services over experts and salespeople, respondents preferred to obtain WOM in the pre-purchasing phase of buying products and services in order to reduce the risk of buying products or signing up to services, high prices can evoke NWOM, market mavens with disabilities could spread WOM, the best to access WOM was via electronic forms. The overall conclusion was that WOM was very influential when people with disabilities are purchasing products and services.
DOI: 10.6084/m9.figshare.28838249.v1
title: SRR3414637.uniq.sorted.bamhisat

description: SRR3414637
DOI: 10.25573/serc.22025405.v5
title: 2023 Water Quality Data, Bocas del Toro, MarineGEO, Smithsonian Tropical Research Institute

description: This data has moved to a consolidated dataset here: https://doi.org/10.25573/serc.24794262<br>
DOI: 10.6084/m9.figshare.16943756.v1
title: A noncanonical autophagy is involved in the transfer of <i>Plasmodium</i>-microvesicles to astrocytes

description: Cerebral malaria is a neuroinflammatory disease induced by <i>P. falciparum</i> infection. In animal models, the neuro-pathophysiology of cerebral malaria results from the sequestration of infected red blood cells (iRBCs) in microvessels that promotes the activation of glial cells in the brain. This activation provokes an exacerbated inflammatory response characterized by the secretion of proinflammatory cytokines and chemokines, leading to brain infiltration by pathogenic CD8<sup>+</sup> T lymphocytes. Astrocytes are a major subtype of brain glial cells that play an important role in maintaining the homeostasis of the central nervous system, the integrity of the brain–blood barrier and in mounting local innate immune responses. We have previously shown that parasitic microvesicles (<i>Pb</i>A-MVs) are transferred from iRBCs to astrocytes. The present study shows that an unconventional LC3-mediated autophagy pathway independent of ULK1 is involved in the transfer and degradation of <i>Pb</i>A-MVs inside the astrocytes. We further demonstrate that inhibition of the autophagy process by treatment with 3-methyladenine blocks the transfer of <i>Pb</i>A-MVs, which remain localized in the astrocytic cell membrane and are not internalized. Moreover, bafilomycin A<sub>1</sub>, another drug against autophagy promotes the accumulation of <i>Pb</i>A-MVs inside the astrocytes by inhibiting the fusion with lysosomes, and prevents ECM in mice infected with <i>Pb</i>A. Finally, we establish that RUBCN/rubicon or ATG5 silencing impede astrocyte production in CCL2 and CXCL10 chemokines induced by <i>Pb</i>A stimulation. Altogether, our data suggest that a non-canonical autophagy-lysosomal pathway may play a key role in cerebral malaria through regulation of brain neuro-inflammation by astrocytes.
DOI: 10.6084/m9.figshare.21820632.v1
title: Burden and outcomes of chronic kidney disease in patients presenting with hypertensive crisis

description: Objectives To determine prevalence of chronic kidney disease (CKD) in patients presenting with hypertensive crises and to determine their 30-day outcomes with respect to blood pressure (BP), creatinine level, and mortality. Methods Patients admitted to the HTN-C were prospectively enrolled. Demographics, examinations, target organ damage (TOD), and investigations were recorded. Patients were classified as hypertensive emergency(HTN-E) or hypertensive urgent(HTN-U). TODs included cardiovascular (acute coronary syndromes and pulmonary edema), neurological (stroke, encephalopathy), ocular (retinal hemorrhage, papilledema), renal (acute kidney injury-AKI), and hematological (microangiopathic hemolytic anemia). The CKD burden was determined. BP, creatinine, and mortality were assessed at discharge and after 30 days. AKI was confirmed at follow-up, with a reduction in creatinine level of &gt;25%. Results 235/262 patients had HTN-E; patients were mostly male and middle-aged. The TOD with decreasing frequency was cardiovascular(53%), ocular(29%), neurological(26%), and AKI(24%). Patients with CKD were significantly younger, had hypertension with ≥2 drugs, and had a higher proportion of TOD. Patients with CKD had significantly higher BP and creatinine levels at discharge and at 30 days; the non-CKD group had a higher inpatient mortality rate and lower mortality at 30 days. Conclusions Specific markers of AKI in patients with underlying CKD are needed to prioritize care during hypertensive crises. Better community-level support in the form of physicians, nephrologists, and dialysis centers is required for timely assessment of the diagnosis and progression of CKD, recognition and treatment of AKI, control of blood pressure, and regular dialysis, which may reduce the load on emergency departments for hypertensive crises.
DOI: 10.6084/m9.figshare.15168909.v1
title: Source Data: Transformation of tenofovir into stable ProTide nanocrystals with long-acting pharmacokinetic profiles

description: Raw data for main and supplementary figures from: Cobb et al.,<i> Transformation of tenofovir into stable ProTide nanocrystals</i> <i>with long-acting pharmacokinetic profiles</i>. Nature Communications (2021).<br>
DOI: 10.6084/m9.figshare.28218782.v1
title: <b>Platelet-Based Biomarkers: A New Frontier in Inflammation Monitoring for Respiratory Infections</b>

description: Platelets are essential for haemostasis and have emerging roles in inflammation, particularly in respiratory infections like pulmonary tuberculosis (PTB) and pneumonia. The objective of this study was to assess alterations in platelet counts and indices and their association with ESR in PTB and pneumonia patients compared to healthy controls, in evaluating their diagnostic and prognostic potential. A retrospective case-control study was conducted at a tertiary care center involving 450 participants: 158 PTB patients, 142 pneumonia patients, and 150 healthy controls. Laboratory data including platelet counts, MPV, Pct, PDW, and ESR were retrieved from the hospital’s Laboratory Information System. Receiver Operating Characteristic (ROC) curve analysis using SPSS to determine diagnostic efficacy. PTB and pneumonia patients had significantly higher platelet counts and Pct, and lower MPV compared to controls (p&lt;0.001). In PTB patients, platelet count positively correlated with Pct and ESR, and negatively with MPV and PDW (p&lt;0.001). Similar patterns were observed in pneumonia patients. ROC analysis identified platelet count and Pct cutoff values of 312,500/µl and 0.21%, respectively, with moderate sensitivity and specificity for differentiating PTB from pneumonia. ESR cutoff was 66.5 mm/h with comparable diagnostic performance. Altered platelet counts and indices in PTB and pneumonia patients correlate with ESR levels, suggesting their utility as non-invasive diagnostic and prognostic markers in respiratory infections. Further prospective studies are needed to validate these findings and integrate platelet indices into clinical diagnostics.
DOI: 10.6084/m9.figshare.13129529.v1
title: Natural regeneration in urban forests is limited by early-establishment dynamics: implications for management

description: Data comparing urban and rural forest in NYC metro region. Data include forest strata (canopy, sapling, seedling, seed rain, and seed bank), stocking, and advance regeneration. Data was collected from 2016 to 2018.<br>
DOI: 10.6084/m9.figshare.23634468.v4
title: result.xls

description: This data is the collection of measurements of subcortical nuclei of brain in MRI of brains.
DOI: 10.6084/m9.figshare.3558825.v1
title: Appendix A. Site and herbivore exclosure design information.

description: Site and herbivore exclosure design information.
DOI: 10.6084/m9.figshare.14635986.v1
title: Trap versus net: behavioural sampling bias caused by capture method in three-spined sticklebacks

description: Dataset
DOI: 10.6084/m9.figshare.28157662.v1
title: Additional file 9 of VCP regulates early tau seed amplification via specific cofactors

description: Supplementary Material 9: Supplemental Table 1.
DOI: 10.4121/21750611.v1
title: Additional data for the paper: Free-Space Diffused Light Collimation and Concentration

description: We are providing raw data and calculation files for the paper: <strong>Free-Space Diffused Light Collimation and Concentration.</strong> The files contain additional simulation results and explanations thereof. Furthermore, spectro-angular emission raw data as well as UV-spectroscopy data is included. Finally, calculation files are also included.
DOI: 10.5281/zenodo.15314676
title: Supporting Dataset and Code for Changing Aerosol Chemistry is Redefining HONO Sources

description: 该数据集和相关的 Python 代码支持标题为“改变气溶胶化学正在重新定义 HONO 源”的文章中提出的发现。

观测数据是通过 2019 年至 2023 年在北京进行的长期实地测量获得的。提供了两个数据文件:一个包含主稿中使用的处理数据,另一个支持补充信息。

还包括两个 Python 脚本。一个用于拟合气溶胶 pH 值,另一个用于拟合 NO₂ 吸收系数 (γNO₂)。这两个模型都利用随机森林算法结合 SHAP (SHapley Additive explanations) 分析来量化影响变量的相对重要性。

这些资源旨在提高文章中报告的结果的透明度和可重复性。

如果你使用这个数据集或代码,请引用以下文章:

张玉生.(2025). “改变气溶胶化学正在重新定义 HONO 源”的支持数据集和代码。芝诺多。https://doi.org/10.5281/zenodo.15314677
DOI: 10.5281/zenodo.15314677
title: Supporting Dataset and Code for Changing Aerosol Chemistry is Redefining HONO Sources

description: 该数据集和相关的 Python 代码支持标题为“改变气溶胶化学正在重新定义 HONO 源”的文章中提出的发现。

观测数据是通过 2019 年至 2023 年在北京进行的长期实地测量获得的。提供了两个数据文件:一个包含主稿中使用的处理数据,另一个支持补充信息。

还包括两个 Python 脚本。一个用于拟合气溶胶 pH 值,另一个用于拟合 NO₂ 吸收系数 (γNO₂)。这两个模型都利用随机森林算法结合 SHAP (SHapley Additive explanations) 分析来量化影响变量的相对重要性。

这些资源旨在提高文章中报告的结果的透明度和可重复性。

如果你使用这个数据集或代码,请引用以下文章:

张玉生.(2025). “改变气溶胶化学正在重新定义 HONO 源”的支持数据集和代码。芝诺多。https://doi.org/10.5281/zenodo.15314677
DOI: 10.6084/m9.figshare.6991847.v1
title: Systemic effects induced by intralesional injection of ω-conotoxin MVIIC after spinal cord injury in rats

description: Background:Calcium channel blockers such as conotoxins have shown a great potential to reduce brain and spinal cord injury. MVIIC neuroprotective effects analyzed in in vitromodels of brain and spinal cord ischemia suggest a potential role of this toxin in preventing injury after spinal cord trauma. However, previous clinical studies with MVIIC demonstrated that clinical side effects might limit the usefulness of this drug and there is no research on its systemic effects. Therefore, the present study aimed to investigate the potential toxic effects of MVIIC on organs and to evaluate clinical and blood profiles of rats submitted to spinal cord injury and treated with this marine toxin. Rats were treated with placebo or MVIIC (at doses of 15, 30, 60 or 120 pmol) intralesionally following spinal cord injury. Seven days after the toxin administration, kidney, brain, lung, heart, liver, adrenal, muscles, pancreas, spleen, stomach, and intestine were histopathologically investigated. In addition, blood samples collected from the rats were tested for any hematologic or biochemical changes.Results:The clinical, hematologic and biochemical evaluation revealed no significant abnormalities in all groups, even in high doses. There was no significant alteration in organs, except for degenerative changes in kidneys at a dose of 120 pmol.Conclusions:These findings suggest that MVIIC at 15, 30 and 60 pmol are safe for intralesional administration after spinal cord injury and could be further investigated in relation to its neuroprotective effects. However, 120 pmol doses of MVIIC may provoke adverse effects on kidney tissue.
DOI: 10.6084/m9.figshare.1320528.v1
title: Dataset: Fibroblast Reprogramming Diversity

description: Referenced in: "Defining phenotypic respecification diversity using multiple cell lines and reprogramming regimens". Stem Cells and Development, 22(19), 2641-2654 (2013) and "Cellular decision-making bias: the missing ingredient in cell functional diversity". arXiv:1310.8268 (2013).
DOI: 10.6084/m9.figshare.13475310.v1
title: Roaring_model.xlsx

description: Data set used to assess the effect of climate on the roaring rate of red deer in the Doñana Population.
DOI: 10.6084/m9.figshare.13507362.v4
title: Responses to the Greek version of the Approaches to Study Skills Inventory for Students

description: An Excel file that contains all the responses to the inventory and additional information for each responder (see Dedos S.G. & Fousakis D. manuscript for details)An additional file is attached that contains a codebook in .htm format for the responses to the Greek version of the Approaches to Study Skills Inventory for Students (see Dedos S.G. & Fousakis D. manuscript for details)<br>
DOI: 10.6084/m9.figshare.19918327.v1
title: Supplementary Table S1 and the associated references

description: Table S1 from the paper "The evolution of aggressive and amicable play fighting in primates: A phylogenetic perspective" submitted to the <em>International Journal of Play </em>by Pellis et al. This table describes species for which reasonable guestimates about character states of play fighting could be made. As described in the text, where possible, each species was given a ranked rating. For feature A, a score of 1 signifies little aggressive play (i.e., mostly amicable play) and a score of 4 signifies virtually all aggressive play (i.e., little or no amicable play. Similarly, for feature B, a score of 1 signifies little to no mixing of amicable and aggressive play, and a score of 3 signifies considerable mixing. In both cases, scores between the extremes signify intermediate states.
DOI: 10.6084/m9.figshare.21130181.v2
title: Forward-facing 2

description: This data set is generated using the Coppelia Sim.The second forward-facing camera dataset is also created using cameras with 120o field of view attached to each robot and accessed programmatically. <br> However, unlike forward-facing Dataset 1, every 75-frame sequence will be horizontally concatenated with sequences from the other robots at the same time . <br> The final sequence will be 75 images of size 64x512 pixels. 436 instances are generated after concatenating the robots’ camera data.