cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0085299.10fu
title: SH0085299.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive17691.20250331.9.3
title: Oscillibacter valericigenes Iino et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.18154035
title: Dynamics of bacterial biofilm development imaged using light sheet fluorescence microscopy

description: Source data of the figures and supplementary figures in the published the article.

psd_mvp_control_source_code.zip



Source code of the application for controling the pump of the biofilm flow system described in the publication.

https://github.com/fuzikt/psd_mvp_control


source_reconstruction_of_Fig3_SA_cluster1_RGB.tif



multiview reconstruction (3D) of of 20-h-old S. aureus biofilm shown in Fig.3. in the publication.

tif file can be opened in ImageJ (Fiji)


source_reconstruction_of_Fig3_SA_cluster2_RGB.tif



multiview reconstruction (3D) of of 20-h-old S. aureus biofilm shown in Fig.3. in the publication.

tif file can be opened in ImageJ (Fiji)


source_reconstruction_of_Fig4_cross_section.tif



multiview reconsruction (3D) of 5-day-old S. aureus biofilm shown in Fig.4. in the publication..

tif file can be opened in ImageJ (Fiji)


source_reconstruction_of_Fig6_PA_cluster1_GB.tif



multiview reconstruction (3D) of 23-h-old P. aeruginosa biofilm shown in Fig.6. in the publication.

tif file can be opened in ImageJ (Fiji)


source_reconstruction_of_Fig6_PA_cluster2_GB.tif



multiview reconstruction (3D) of 23-h-old P. aeruginosa biofilm shown in Fig.6. in the publication.

tif file can be opened in ImageJ (Fiji)


source_reconstruction_of_Fig8_SAPA_cluster1_RG.tif



multiview reconstruction (3D) of mixed P. aeruginosa and S. aureus biofilm after 64 h of development shown in Fig.8. in the publication.

tif file can be opened in ImageJ (Fiji)


source_reconstruction_of_Fig8_SAPA_cluster2_RG.tif



multiview reconstruction (3D) of mixed P. aeruginosa and S. aureus biofilm after 64 h of development shown in Fig.8. in the publication.

tif file can be opened in ImageJ (Fiji)


supplementary_material.pdf



Supplementary material  


Supplementary_movie1.mp4



Supplementary movie 1


Supplementary_movie2.mp4



Supplementary movie 2


Supplementary_movie3.mp4



Supplementary movie 3


Supplementary_movie4.mp4



Supplementary movie 4


Supplementary_movie5.mp4



Supplementary movie 5


Supplementary_movie6.mp4



Supplementary movie 6
DOI: 10.13145/bacdive17691.20251217.10
title: Oscillibacter valericigenes Iino et al. 2007

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive17692.20250331.9.3
title: Hydrogenoanaerobacterium saccharovorans Song and Dong 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0085300.10fu
title: SH0085300.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.4wc25t
title: Occurrence Download

description: A dataset containing 2504 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Goodyera schlechtendaliana"
 ]
}

 The dataset includes 2504 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076940-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18154034
title: Dynamics of bacterial biofilm development imaged using light sheet fluorescence microscopy

description: Source data of the figures and supplementary figures in the published the article.

psd_mvp_control_source_code.zip



Source code of the application for controling the pump of the biofilm flow system described in the publication.

https://github.com/fuzikt/psd_mvp_control


source_reconstruction_of_Fig3_SA_cluster1_RGB.tif



multiview reconstruction (3D) of of 20-h-old S. aureus biofilm shown in Fig.3. in the publication.

tif file can be opened in ImageJ (Fiji)


source_reconstruction_of_Fig3_SA_cluster2_RGB.tif



multiview reconstruction (3D) of of 20-h-old S. aureus biofilm shown in Fig.3. in the publication.

tif file can be opened in ImageJ (Fiji)


source_reconstruction_of_Fig4_cross_section.tif



multiview reconsruction (3D) of 5-day-old S. aureus biofilm shown in Fig.4. in the publication..

tif file can be opened in ImageJ (Fiji)


source_reconstruction_of_Fig6_PA_cluster1_GB.tif



multiview reconstruction (3D) of 23-h-old P. aeruginosa biofilm shown in Fig.6. in the publication.

tif file can be opened in ImageJ (Fiji)


source_reconstruction_of_Fig6_PA_cluster2_GB.tif



multiview reconstruction (3D) of 23-h-old P. aeruginosa biofilm shown in Fig.6. in the publication.

tif file can be opened in ImageJ (Fiji)


source_reconstruction_of_Fig8_SAPA_cluster1_RG.tif



multiview reconstruction (3D) of mixed P. aeruginosa and S. aureus biofilm after 64 h of development shown in Fig.8. in the publication.

tif file can be opened in ImageJ (Fiji)


source_reconstruction_of_Fig8_SAPA_cluster2_RG.tif



multiview reconstruction (3D) of mixed P. aeruginosa and S. aureus biofilm after 64 h of development shown in Fig.8. in the publication.

tif file can be opened in ImageJ (Fiji)


supplementary_material.pdf



Supplementary material  


Supplementary_movie1.mp4



Supplementary movie 1


Supplementary_movie2.mp4



Supplementary movie 2


Supplementary_movie3.mp4



Supplementary movie 3


Supplementary_movie4.mp4



Supplementary movie 4


Supplementary_movie5.mp4



Supplementary movie 5


Supplementary_movie6.mp4



Supplementary movie 6
DOI: 10.13145/bacdive17692.20251217.10
title: Hydrogenoanaerobacterium saccharovorans Song and Dong 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive17693.20250331.9.3
title: Nitriliruptor alkaliphilus Sorokin et al. 2009 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive17693.20251217.10
title: Nitriliruptor alkaliphilus Sorokin et al. 2009 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive17694.20250331.9.3
title: Kiloniella laminariae Wiese et al. 2009 emend. Yang et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0085301.10fu
title: SH0085301.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive17694.20251217.10
title: Kiloniella laminariae Wiese et al. 2009 emend. Yang et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0085302.10fu
title: SH0085302.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive17695.20250331.9.3
title: Algoriphagus antarcticus Van Trappen et al. 2004

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive17695.20251217.10
title: Algoriphagus antarcticus Van Trappen et al. 2004

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive17696.20250331.9.3
title: Algoriphagus marincola (Yoon et al. 2004) Nedashkovskaya et al. 2007 emend. Hahnke et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive17696.20251217.10
title: Algoriphagus marincola (Yoon et al. 2004) Nedashkovskaya et al. 2007 emend. Hahnke et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0085303.10fu
title: SH0085303.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.qyx87w
title: Occurrence Download

description: A dataset containing 38026686 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 GBIF_EEARGCODE(1000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)) eeacellcode,
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, GBIF_EEARGCODE(1000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)), "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, GBIF_EEARGCODE(1000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)), "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, GBIF_EEARGCODE(1000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)), "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, GBIF_EEARGCODE(1000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)), "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, GBIF_EEARGCODE(1000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)), "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, GBIF_EEARGCODE(1000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)), "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'DE'
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL AND occurrence.hascoordinate = TRUE)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year",
 GBIF_EEARGCODE(1000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000))

 The dataset's 38026686 records were derived from 2702 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076912-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vhgm97
title: Occurrence Download

description: A dataset containing 30597 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Emballonuridae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 30597 records from 309 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058002-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-13853
title: McClelland work product: Background for chapter 6, 1991-02-27 - 1991-05-29 (1 of 2)

description: Nancy McClelland work product: Background for chapter 6, 1991 February 27 - May 29 (1 of 2). PART OF A SERIES: The staff of Gibson, Dunn & Crutcher coordinated witness interviews and conducted an extensive review of complaints filed against LAPD officers. Included in the series are summaries of witness interviews, statistics and investigative reports related to citizen complaints, an analysis on adjudicated cases involving use-of-force complaints, reports regarding LAPD's recruitment of African American officers and community oriented policing, and an excerpt from Malcolm Sparrow's Beyond 9-1-1. Also included are materials related to the firm's work product, including attorney notes, work plans, memoranda, and drafts of chapters for the Commission report.
DOI: 10.15468/dl.oltauu
title: Occurrence Download

description: A dataset containing 56781 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apis mellifera Linnaeus, 1758"
 ]
}

 The dataset includes 56781 records from 405 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001154-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-11963
title: Transcripts from Independent Commission public hearing, 1991-05-01

description: Paperwork and transcript from Independent Commission public meeting, 1991 May 1 - June 6. PART OF A SERIES: The series consists of miscellaneous source materials that were collected and analyzed over the course of the Independent Commission's investigation. Included are the following: article clippings pertaining to the Rodney King incident; legal materials related to the Gates v. Board of Los Angeles Police Commissioners case, including appellate documents, court transcripts, preliminary injunctions, and briefs; black-and-white photographs; essays and articles related to police misconduct; issues of The Thin Blue Line, the Los Angeles Police Protective League's monthly publication, and Perspectives on Policing, a newsletter published by the United States Department of Justice; materials regarding policing issues in other major United States cities, including commission reports and Pate and Hamilton's book The Big Six: Policing America's Largest Cities; supplemental materials and appendices to the Independent Commission's report; requests for copies of the Commission report; transcripts from public hearings conducted by members of the Commission; and instructional materials related to the Video Incident Capture System, a video camera system that provides video and audio records of police officers' activities while on patrol.
DOI: 10.15468/dl.a2vsuc
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Stomoxys calcitrans (Linnaeus, 1758)"
 ]
}

 The dataset's 1 records were derived from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002666-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-11779
title: Various requests for copies of the Christopher Commission Report

description: Various requests for copies of the Christopher Commission Report. PART OF A SERIES: The series consists of miscellaneous source materials that were collected and analyzed over the course of the Independent Commission's investigation. Included are the following: article clippings pertaining to the Rodney King incident; legal materials related to the Gates v. Board of Los Angeles Police Commissioners case, including appellate documents, court transcripts, preliminary injunctions, and briefs; black-and-white photographs; essays and articles related to police misconduct; issues of The Thin Blue Line, the Los Angeles Police Protective League's monthly publication, and Perspectives on Policing, a newsletter published by the United States Department of Justice; materials regarding policing issues in other major United States cities, including commission reports and Pate and Hamilton's book The Big Six: Policing America's Largest Cities; supplemental materials and appendices to the Independent Commission's report; requests for copies of the Commission report; transcripts from public hearings conducted by members of the Commission; and instructional materials related to the Video Incident Capture System, a video camera system that provides video and audio records of police officers' activities while on patrol.