cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.18739/a27w67535
title: Chukchi and Bering Sea surface water particulate organic matter distributions (summer/fall 2012, 2015, 2016, 2017)
DOI: 10.5281/zenodo.2025846
title: Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method

description: This dataset contains a GitHub repository containing all the data, analysis, Nextflow workflows and Jupyter notebooks to replicate the manuscript titled "Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method". It also contains the Multiple Sequence Alignments (MSAs) generated and well as the main figures and tables from the manuscript. The repository is also available at GitHub (https://github.com/cbcrg/dpa-analysis) release `v1.2`. For details on how to use the regressive alignment algorithm, see the T-Coffee software suite (https://github.com/cbcrg/tcoffee).
DOI: 10.5281/zenodo.785619
title: Contemporary phenotypic change in plant quantitative traits

description: This is a new version of the Gorné & Díaz 2017 database (doi:10.5281/zenodo.580095). We cheked the categorization of each case, fixed of some mistakes. Also, we disambiguated the trait type moderator and add a new (mean based) measure of change. This database included studies that provide data of changes in quantitative traits of angiosperms within a known temporal framework (&lt;300 years). The search was performed by Scopus (www.scopus.com), up to 22 December 2015 (search strings in Gorné and Díaz 2017). The database includes studies that measured intraspecific change in a quantitative trait and which report the elapsed time when the phenotypic change occurred. The studies recorded a single population before and after a change in the environment or compared two (or more) populations by measuring a quantitative trait across two situations, where one of them was a new condition of known age. Both, by measuring change directly in the field or by performing common condition experiments (e.g. common garden experiments or reciprocal transplants). Studies reporting results from artificial selection or interspecific hybridization were excluded. The environmental changes included expansions of distributional range, soil or air pollution, exposure to herbicides, changes in salinity, pH, climate, disturbance or irrigation regime, and addition or loss of species in the local community. All data available in each study were recorded, including several observations of the same species. These procedures resulted in a database containing 1716 observations from 128 studies, with changes in populations of 152 species from 34 families, in elapsed times of &lt; 260 years, and covering a wide range of traits, lifespan, growth forms and environmental situations. All data points were categorized according to biological properties of the study system (lifespan, growth form, trait type) and methodological ones. The amount and rate of phenotypic change is expresed as the standardized mean difference Hedges <em>g</em> (Hedges 1981, 1982), a rate of change which is the Hedges <em>g</em> over the elapsed time in years, and the log-transformation of both of them. The standardized mean difference is equal to the <em>haldane</em> numerator, which is a standard rate of evolution (Haldane 1949; Gingerich 1993). In addition, we upgraded the Díaz and Gorné (2017) database, computing the response ratio effect size (<em>logRR</em>) (Hedges et al. 1999) whenever possible. The response ratio is a mean-scaled metric equal to the <em>darwins</em> numerator (Haldane 1949). So that we compute a rate of change similar to <em>darwins</em> (time expressed as years instead of million years). contact email address: gorneld@gmail.com
DOI: 10.6085/aa/bbyx00_xxxitv2xmmr01_20160820.40.1
title: (:unkn)
DOI: 10.6085/aa/bbyx00_xxxitv2xmmr01_20160820.50.1
title: PISCO: Intertidal: mussel growth temperature data: Boiler Bay, Oregon, USA (BBYX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Boiler Bay, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2016-08-20. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 5.0 minute intervals.
DOI: 10.6085/aa/bbyx00_xxxitv2xmmr01_20170427.40.1
title: (:unkn)
DOI: 10.6085/aa/bbyx00_xxxitv2xmmr01_20170427.50.1
title: PISCO: Intertidal: mussel growth temperature data: Boiler Bay, Oregon, USA (BBYX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Boiler Bay, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2017-04-27. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/bbyx00_xxxitv2xmmr02_20160820.40.1
title: (:unkn)
DOI: 10.6085/aa/bbyx00_xxxitv2xmmr02_20160820.50.1
title: PISCO: Intertidal: mussel growth temperature data: Boiler Bay, Oregon, USA (BBYX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Boiler Bay, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2016-08-20. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 5.0 minute intervals.
DOI: 10.6085/aa/bbyx00_xxxitv2xmmr02_20170427.40.1
title: (:unkn)
DOI: 10.6085/aa/bbyx00_xxxitv2xmmr02_20170427.50.1
title: PISCO: Intertidal: mussel growth temperature data: Boiler Bay, Oregon, USA (BBYX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Boiler Bay, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2017-04-27. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/bbyx00_xxxitv2xmmr03_20160820.40.1
title: (:unkn)
DOI: 10.6085/aa/bbyx00_xxxitv2xmmr03_20170525.40.1
title: (:unkn)
DOI: 10.6085/aa/cblx00_xxxitv2xmmr01_20160830.40.1
title: (:unkn)
DOI: 10.6085/aa/cblx00_xxxitv2xmmr01_20170514.40.1
title: (:unkn)
DOI: 10.6085/aa/cblx00_xxxitv2xmmr02_20160830.40.1
title: (:unkn)
DOI: 10.6085/aa/cblx00_xxxitv2xmmr02_20160830.50.1
title: PISCO: Intertidal: mussel growth temperature data: Cape Blanco, Oregon, USA (CBLX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Cape Blanco, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2016-08-30. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 5.0 minute intervals.
DOI: 10.6085/aa/cblx00_xxxitv2xmmr02_20170514.40.1
title: (:unkn)
DOI: 10.6085/aa/cblx00_xxxitv2xmmr02_20170514.50.1
title: PISCO: Intertidal: mussel growth temperature data: Cape Blanco, Oregon, USA (CBLX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Cape Blanco, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2017-05-14. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/cmrx00_xxxitv2xmmr01_20160922.40.1
title: (:unkn)
DOI: 10.6085/aa/cmrx00_xxxitv2xmmr01_20160922.50.1
title: PISCO: Intertidal: mussel growth temperature data: Cape Meares, Oregon, USA (CMRX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Cape Meares, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2016-09-22. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/fckx00_xxxitv2xmmr01_20160819.40.1
title: (:unkn)
DOI: 10.6085/aa/fckx00_xxxitv2xmmr01_20170426.40.1
title: (:unkn)
DOI: 10.6085/aa/fckx00_xxxitv2xmmr03_20160819.40.1
title: (:unkn)
DOI: 10.6085/aa/fckx00_xxxitv2xmmr03_20160819.50.1
title: PISCO: Intertidal: mussel growth temperature data: Fogarty Creek, Oregon, USA (FCKX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Fogarty Creek, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2016-08-19. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/ghvx00_xxxitv2xmmr01_20160818.40.1
title: (:unkn)
DOI: 10.6085/aa/ghvx00_xxxitv2xmmr01_20170515.50.1
title: PISCO: Intertidal: mussel growth temperature data: Gull Haven, Oregon, USA (GHVX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Gull Haven, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2017-05-15. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/pohx00_xxxitv2xmmr01_20160901.40.1
title: (:unkn)
DOI: 10.6085/aa/pohx00_xxxitv2xmmr01_20160901.50.1
title: PISCO: Intertidal: mussel growth temperature data: Port Orford Head, Oregon, USA (POHX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Port Orford Head, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2016-09-01. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 5.0 minute intervals.
DOI: 10.6085/aa/rkpx00_xxxitv2xmmr01_20160831.40.1
title: (:unkn)
DOI: 10.5063/f19c6vn5
title: A Global Map of Human Impact on Marine Ecosystems, 2008

description: What happens in the vast stretches of the world's oceans - both wondrous and worrisome - has too often been out of sight, out of mind. The sea represents the last major scientific frontier on planet earth - a place where expeditions continue to discover not only new species, but even new phyla. The role of these species in the ecosystem, where they sit in the tree of life, and how they respond to environmental changes really do constitute mysteries of the deep. Despite technological advances that now allow people to access, exploit or affect nearly all parts of the ocean, we still understand very little of the ocean's biodiversity and how it is changing under our influence. The goal of the research presented here is to estimate and visualize, for the first time, the global impact humans are having on the ocean's ecosystems. Our analysis, published in Science, February 15, 2008 (http://doi.org/10.1126/science.1149345), shows that over 40% of the world's oceans are heavily affected by human activities and few if any areas remain untouched. The top level of this dataset contains the raster data for the modeled impacts map, along with a high resolution jpg version. Sub-levels of this dataset include: raw stressor data, transformed stressor data (raw data is log(x+1) transformed and rescaled by dividing by maximum global value so values range from 0-1), and ecosystem data. All spatial data are projected in WGS 1984 Mollweide.
DOI: 10.5063/f1f47mcw
title: Transformed Stressor Data: A Global Map of Human Impact on Marine Ecosystems, 2008

description: What happens in the vast stretches of the world's oceans - both wondrous and worrisome - has too often been out of sight, out of mind. The sea represents the last major scientific frontier on planet earth - a place where expeditions continue to discover not only new species, but even new phyla. The role of these species in the ecosystem, where they sit in the tree of life, and how they respond to environmental changes really do constitute mysteries of the deep. Despite technological advances that now allow people to access, exploit or affect nearly all parts of the ocean, we still understand very little of the ocean's biodiversity and how it is changing under our influence. The goal of the research presented here is to estimate and visualize, for the first time, the global impact humans are having on the ocean's ecosystems. Our analysis, published in Science, February 15, 2008 (http://doi.org/10.1126/science.1149345), shows that over 40% of the world's oceans are heavily affected by human activities and few if any areas remain untouched. This dataset contains transformed stressor data from 17 different human activities that directly or indirectly have an impact on the ecological communities in the ocean's ecosystems. The transformed data contains log[X+1]-transformed and rescaled indices between 0-1 for each activity. This transformation to puts each stressor activity on a single, unitless scale that allows direct comparison.
DOI: 10.5063/f1pn93wh
title: Ecosystem Data: A Global Map of Human Impact on Marine Ecosystems, 2008

description: What happens in the vast stretches of the world's oceans - both wondrous and worrisome - has too often been out of sight, out of mind. The sea represents the last major scientific frontier on planet earth - a place where expeditions continue to discover not only new species, but even new phyla. The role of these species in the ecosystem, where they sit in the tree of life, and how they respond to environmental changes really do constitute mysteries of the deep. Despite technological advances that now allow people to access, exploit or affect nearly all parts of the ocean, we still understand very little of the ocean's biodiversity and how it is changing under our influence. The goal of the research presented here is to estimate and visualize, for the first time, the global impact humans are having on the ocean's ecosystems. Our analysis, published in Science, February 15, 2008 (http://doi.org/10.1126/science.1149345), shows that over 40% of the world's oceans are heavily affected by human activities and few if any areas remain untouched. Global data for marine ecosystems are largely non-existent; here we used available data for several ecosystems, modeled the distribution of many other ecosystems, and assumed a uniform distribution for several intertidal ecosystems for which no data exist. We recognize that differences exist in how people classify ecosystems; for example, estuaries are often considered an ecosystem, but here we focus on the ecosystems (also often labeled ‘habitats’) that occur within estuaries (salt marsh, intertidal mud, beach, soft sediment, mangroves, etc.). All ecosystem data were represented at 1 km2 resolution. This dataset contains maps for 20 distinct marine ecosystems used in the impacts model. More information on data sources can be found in the methods section.
DOI: 10.5281/zenodo.2032329
title: TCEQ Ozone Forecasting Raw Data

description: Companion to https://zenodo.org/record/1979000#.XArD6ZxOlB0. Raw data ozone (and NOx) for each of the 6 urban areas used in our modeling. These are text files from TAMIS, provided by TCEQ.
DOI: 10.5281/zenodo.2032330
title: TCEQ Ozone Forecasting Raw Data

description: Companion to https://zenodo.org/record/1979000#.XArD6ZxOlB0. Raw data ozone (and NOx) for each of the 6 urban areas used in our modeling. These are text files from TAMIS, provided by TCEQ.
DOI: 10.6085/aa/bbyx00_xxxitv2xhsr01_20160820.40.1
title: (:unkn)
DOI: 10.6085/aa/bbyx00_xxxitv2xhsr01_20160820.50.1
title: PISCO: Intertidal: site temperature data: Boiler Bay, Oregon, USA (BBYX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Boiler Bay, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2016-08-20. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/bbyx00_xxxitv2xhsr01_20170427.40.1
title: (:unkn)
DOI: 10.6085/aa/bbyx00_xxxitv2xhsr01_20170427.50.1
title: PISCO: Intertidal: site temperature data: Boiler Bay, Oregon, USA (BBYX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Boiler Bay, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2017-04-27. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/bbyx00_xxxitv2xmmr03_20160820.50.1
title: PISCO: Intertidal: mussel growth temperature data: Boiler Bay, Oregon, USA (BBYX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Boiler Bay, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2016-08-20. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 5.0 minute intervals.
DOI: 10.6085/aa/bbyx00_xxxitv2xmmr03_20170525.50.1
title: PISCO: Intertidal: mussel growth temperature data: Boiler Bay, Oregon, USA (BBYX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Boiler Bay, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2017-05-25. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/cblx00_xxxitv2xhsr01_20160830.40.1
title: (:unkn)
DOI: 10.6085/aa/cblx00_xxxitv2xhsr01_20160830.50.1
title: PISCO: Intertidal: site temperature data: Cape Blanco, Oregon, USA (CBLX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Cape Blanco, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2016-08-30. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 5.0 minute intervals.
DOI: 10.6085/aa/cblx00_xxxitv2xhsr01_20170514.40.1
title: (:unkn)
DOI: 10.6085/aa/cblx00_xxxitv2xhsr01_20170514.50.1
title: PISCO: Intertidal: site temperature data: Cape Blanco, Oregon, USA (CBLX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Cape Blanco, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2017-05-14. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/cblx00_xxxitv2xmmr01_20160830.50.1
title: PISCO: Intertidal: mussel growth temperature data: Cape Blanco, Oregon, USA (CBLX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Cape Blanco, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2016-08-30. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 5.0 minute intervals.
DOI: 10.6085/aa/cblx00_xxxitv2xmmr01_20170514.50.1
title: PISCO: Intertidal: mussel growth temperature data: Cape Blanco, Oregon, USA (CBLX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Cape Blanco, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2017-05-14. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/cmrx00_xxxitv2xhsr01_20160922.40.1
title: (:unkn)
DOI: 10.6085/aa/cmrx00_xxxitv2xhsr01_20160922.50.1
title: PISCO: Intertidal: site temperature data: Cape Meares, Oregon, USA (CMRX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Cape Meares, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2016-09-22. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/fckx00_xxxitv2xhsr01_20160819.40.1
title: (:unkn)
DOI: 10.6085/aa/fckx00_xxxitv2xhsr01_20160819.50.1
title: PISCO: Intertidal: site temperature data: Fogarty Creek, Oregon, USA (FCKX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Fogarty Creek, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2016-08-19. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.