cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28020935.v1
title: Maianthemum stellatum raw GC-MS files

description: Metabolite extraction from Maianthemum stellatum
DOI: 10.5517/ccdc.csd.cc2jr1dr
title: CCDC 2345844: Experimental Crystal Structure Determination

description: Related Article: Chuan-Wen Lei, Jiao-Jiao Lei, Xiao-Li Feng, Wen-Hui Zhang, Ze-Gang Ma, You-Ping Tian, Ying Zhou|2025|Tetrahedron|169|134360|doi:10.1016/j.tet.2024.134360
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.c.3601532_d9
title: Additional file 3: Table S2. of Integrating network, sequence and functional features using machine learning approaches towards identification of novel Alzheimer genes

description: The complete lists of features obtained after each selection technique.
DOI: 10.6084/m9.figshare.c.3601532_d10
title: Additional file 4: Table S3. of Integrating network, sequence and functional features using machine learning approaches towards identification of novel Alzheimer genes

description: Confusion matrix. Predictions by the individual base classifier algorithms on the Entrez Gene dataset.
DOI: 10.6084/m9.figshare.c.3601532_d11
title: Additional file 6: Table S4. of Integrating network, sequence and functional features using machine learning approaches towards identification of novel Alzheimer genes

description: List of the genes, and their features values, predicted to be Alzheimerâ  s associated by all the classifier algorithms.
DOI: 10.6084/m9.figshare.c.3601559_d7
title: Additional file 10: of Muscle cell identity requires Pax7-mediated lineage-specific DNA demethylation

description: Individual gene expression values normalized by a reference gene are shown for the two or three biological replicates analysed. (XLSX 49 kb)
DOI: 10.5281/zenodo.14420607
title: Processed data

description: Cleaned, processed data used to generate respective figures and tables in the publication: 

Callahan JW, Morales JC, Atherton JF, Wang D, Kostic S, Bevan MD. (2024) Movement-related increases in subthalamic activity optimize locomotion. Cell Rep 43:114495. doi: 10.1016/j.celrep.2024.114495.
DOI: 10.5281/zenodo.14420608
title: Processed data

description: Cleaned, processed data used to generate respective figures and tables in the publication: 

Callahan JW, Morales JC, Atherton JF, Wang D, Kostic S, Bevan MD. (2024) Movement-related increases in subthalamic activity optimize locomotion. Cell Rep 43:114495. doi: 10.1016/j.celrep.2024.114495.
DOI: 10.15468/dl.n78nj8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hippoglossus grigorjewi Herzenstein, 1890",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032452-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3601712_d3
title: Additional file 2 of Identification of key player genes in gene regulatory networks

description: MCDS. This file includes the implementation of ILP formulation for MCDS problem using glpk solver. (SAGE 4 kb)
DOI: 10.6084/m9.figshare.c.3601721_d1
title: Additional file 1: of 
                     C9orf72 is differentially expressed in the central nervous system and myeloid cells and consistently reduced in C9orf72, MAPT and GRN mutation carriers

description: Supplementary Data. Figure S1: Definition of TSSs at the C9orf72 locus; Figure S2: C9orf72 expression changes in challenged CD14+ monocytes. Figure S3: Distinct TSSs expression at C9orf72 locus in CNS, myeloid and lymphoid cells. Figure S4: Sense and antisense C9orf72 transcripts at the C9orf72 locus. Figure S5: Distinct C9orf72 TSSs expression in control brains. Figure S6: C9orf72 expression in adult and fetal cortex. Figure S7: C9orf72 expression level in CD14+ monocytes, brain tissue and microglia. Figure S8: C9orf72 expression in brains of patients with different neurodegenerative diseases. Figure S9: C9orf72 expression in CD14+ monocytes. Suppl. excel File 1: WGCNA results. Suppl. excel File 2: Correlations values between C9orf72 TSS(s) and all the other TSSs in the co-expressed modules. Table S1: Expression of C9orf72 TSSs as defined in CAGEseq dataset 1. Table S2: Expression of C9orf72 TSSs as defined in CAGEseq dataset 2. Table S3: List of primers used in this study. Table S4: Biological functions significant to the three modules related to C9orf72 TSSs as identified by WGCNA. Table S5: Biological functions significant for genes that correlate with C9orf72 TSSs in the WGCNA identified modules. Table S6: Summary of the Mann-Whitney test performed on NRQ values from qPCR experiments on medial frontal gyrus. (ZIP 20675ย�kb)
DOI: 10.15468/dl.qctjek
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mammalia",
 "Geometry POLYGON ((-89.64635 21.05226, -89.55094 21.05226, -89.55094 21.14205, -89.64635 21.14205, -89.64635 21.05226))",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material citation)"
 ]
 }
 }
 ]
}

 The dataset includes 149 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032453-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3601712_d4
title: Additional file 1 of Identification of key player genes in gene regulatory networks

description: MDS. This file includes the implementation of ILP formulation for MDS problem using glpk solver. (SAGE 1 kb)
DOI: 10.6084/m9.figshare.c.3601712_d5
title: Additional file 4 of Identification of key player genes in gene regulatory networks

description: Data.This folder contains GRN files for E. coli, S. cerevisiae, pluripotency network of mouse ESC and breast cancer network modules. (ZIP 278 kb)
DOI: 10.6084/m9.figshare.c.3601733_d1
title: Additional file 1: Table S1. of Molecular phylogenetics reveals convergent evolution in lower Congo River spiny eels

description: Specimens, collection information, and GenBank numbers. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.c.3601733_d2
title: Additional file 2: of Molecular phylogenetics reveals convergent evolution in lower Congo River spiny eels

description: Supplemental Files: xml files for Bayesian analyses (File 1: concatenated loci; File 2: divergence dating). (ZIP 49Â kb)
DOI: 10.6084/m9.figshare.c.3601733_d3
title: Additional file 3: Figure S1-S2. of Molecular phylogenetics reveals convergent evolution in lower Congo River spiny eels

description: Phylogenetic trees constructed using Bayesian inference (BEAST) as described in the text, using (S1) cytochrome b and (S2) concatenated nuclear markers. (ZIP 1811Â kb)
DOI: 10.15468/dl.e9cxan
title: Occurrence Download

description: A dataset containing 70964 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetName is NSF 1503065 (EPICC)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 70964 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032451-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/a9250a8d9e19631dfdd0b719aba955c2
title: Intertidal Crab Data in Midcoast Maine: 2018-2024

description: Invasive species have caused major disruptions to ecosystems worldwide. The European green crab invaded North America in the 1800s and is considered one of the world’s 100 worst invaders by the IUCN. Observations of spatiotemporal green crab population dynamics are essential for predicting and managing the ecological and economic impacts of this harmful invasive species. These data come from a standardized method for assessing green crab population dynamics in the rocky intertidal zone of New England and Atlantic Canada. Data was collected from 10 survey sites located along the coast of Maine from Yarmouth, ME (furthest point south), to Walpole, ME (furthest site north) from January, 2018 to November, 2024. Data was collected following the survey design described in McMahan (2020), using a 1m^2 quadrat to sample rocky intertidal habitat. The resulting data collected using this protocol has a wide range of uses, including to inform ecological research, conservation efforts, mitigation strategies, and fishery development, as well as for educational outreach purposes.
DOI: 10.6084/m9.figshare.c.3601763_d6
title: Additional file 2: of 
                     matK-QR classifier: a patterns based approach for plant species identification

description: The PSSM and distance matrices of matK and rbcL loci datasets. (XLSX 2899Â kb)
DOI: 10.6084/m9.figshare.c.3601775_d1
title: Additional file 7 of Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans

description: Differentially Expressed Genes. Differntially expressed genes as called by edgeR, DESeq2 and PoissonSeq as well as the consensus set of all three methods. Includes fold change and p-values. (XLSX 370 KB)
DOI: 10.6084/m9.figshare.c.3601763_d7
title: Additional file 6: of 
                     matK-QR classifier: a patterns based approach for plant species identification

description: The details of the recall, precision and F-measure values of signatures, BLASTn, SVM, Naive Bayesian, RIPPER, and C4.5 methods. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3601787_d2
title: Additional file 2: of Metabolites involved in cellular communication among human cumulus-oocyte-complex and sperm during in vitro fertilization

description: Table S2. In silico analysis of the gene expression in cumulus cells related with PHS and LPC synthesis using the GSE46490 data (XLS 8 kb)
DOI: 10.6084/m9.figshare.c.3601775_d3
title: Additional file 3 of Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans

description: Estimated RNA Counts Per Cell. Estimated count of each mRNA in an average methanol and acetate grown cell. (XLSX 277 KB)
DOI: 10.6084/m9.figshare.c.3601775_d4
title: Additional file 4 of Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans

description: Read Counts. Unnormalized and normalized reads mapped onto the M. acetivorans reference genome. (XLSX 4782 KB)
DOI: 10.6084/m9.figshare.c.3601775_d5
title: Additional file 2 of Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans

description: Metabolic Model and Maps. A zip file archive containing the iST807 metabolic model in the SBML format, an Excel spreadsheet including descriptions of the metabolic model and the metabolic map in formats compatible with Cytoscape and Escher. (ZIP 1392 KB)
DOI: 10.5281/zenodo.14419643
title: dbNSFPv4.9a
DOI: 10.5281/zenodo.14419644
title: dbNSFPv4.9a
DOI: 10.6084/m9.figshare.c.3601955_d1
title: Additional file 2: of Detecting genotyping errors at Schistosoma japonicum microsatellites with pedigree information

description: Genotype data on offspring miracidia and their parental worms. (XLS 48 kb)
DOI: 10.34740/kaggle/dsv/10171426
title: chatGPT reviews from google play store
DOI: 10.15468/dl.v3dbv3
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Albatrossia pectoralis (Gilbert, 1892)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 289 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032456-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3601970_d1
title: Additional file 2: Table S2. of Genome-wide association and genomic prediction identifies associated loci and predicts the sensitivity of Tobacco ringspot virus in soybean plant introductions

description: T RSV sensitivities of 697 soybean PIs that used for GWAS. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.c.3601970_d2
title: Additional file 1: Table S1. of Genome-wide association and genomic prediction identifies associated loci and predicts the sensitivity of Tobacco ringspot virus in soybean plant introductions

description: LUP and GEBV of unscreened 18,955 USDA Soybean Germplasm Collection. (XLSX 890 kb)
DOI: 10.5066/p14dvcsk
title: Physical and Imagery-Based Morphological Measures of Pacific Walruses in Human Care

description: This dataset contains morphological measures of 21 Pacific walruses in human care in the United States, Belgium, and Germany measured directly and via an aerially mounted camera in 2022 and 2023. Six individuals were measured twice: once at their typical annual lowest body mass and once at their typical annual maximum body mass. The remaining 15 individuals were measured on one occasion. Straight-line linear measures of width behind the front flippers and at the hip, full girth behind the front flippers, straight line length, snout width, and body mass were collected as direct, physical measures. Straight line body length, width behind the front flippers, width at the hip, and body area footprint were measured from aerial imagery.
DOI: 10.6084/m9.figshare.c.3601997_d7
title: Additional file 8: of Transcriptomic and proteomic analyses of core metabolism in Clostridium termitidis CT1112 during growth on Îą-cellulose, xylan, cellobiose and xylose

description: Potential cre sequences identified within the C. termitidis CT1112 genome (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3602003_d4
title: Additional file 1: Table S1. of Association analysis for disease resistance to Fusarium oxysporum in cape gooseberry (Physalis peruviana L)

description: List of the germplasm used for association of the cape gooseberry resistance response to F. oxysporum in the present study. (XLS 50 kb)
DOI: 10.6084/m9.figshare.c.3602006_d1
title: MOESM1 of The intestinal distribution pattern of appetite- and glucose regulatory peptides in mice, rats and pigs

description: Additional file 1: Table S1. Measured concentrations.
DOI: 10.6084/m9.figshare.c.3601997_d10
title: Additional file 9: of Transcriptomic and proteomic analyses of core metabolism in Clostridium termitidis CT1112 during growth on α-cellulose, xylan, cellobiose and xylose

description: Highly expressed ABC type sugar transporters identified in the transcriptome and proteome of C. termitidis. Normalized proteomic Z-scores Pnet are represented as: (i) P0: xylose grown cells – cellobiose grown cells; (ii) P1: α-cellulose grown cells – cellobiose grown cells; and (iii) P2: xylan grown cells – cellobiose grown cells. Normalized transcriptomic Z-scores Rnet are represented as: (i) R0: xylose grown cells – cellobiose grown cells; (ii) R1: α-cellulose grown cells – cellobiose grown cells; and (iii) R2: xylan grown cells – cellobiose grown cells. Highlighted cells represent Znet-value threshold for up and down regulation of ± 1.65 (representing the outermost 10 % of the data set). Up-regulation in the corresponding substrate with respect to cellobiose are highlighted in red, while down-regulation in the corresponding substrate with respect to cellobiose are highlighted in green. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3601997_d11
title: Additional file 11: of Transcriptomic and proteomic analyses of core metabolism in Clostridium termitidis CT1112 during growth on Îą-cellulose, xylan, cellobiose and xylose

description: RNA seq and Proteomics expression values of enzymes identified in C. termitidis carbon metabolism pathways. CB: cellobiose; AC: Îą â  cellulose. Numbers in brackets indicate replicate samples (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3601997_d12
title: Additional file 6: of Transcriptomic and proteomic analyses of core metabolism in Clostridium termitidis CT1112 during growth on α-cellulose, xylan, cellobiose and xylose

description: Expression values and Znet values of genes and gene products identified in C. termitidis cultured under various substrate conditions. Normalized proteomic Z-scores Pnet are represented as: (i) P0: xylose grown cells – cellobiose grown cells; (ii) P1: α-cellulose grown cells – cellobiose grown cells; and (iii) P2: xylan grown cells – cellobiose grown cells. Normalized transcriptomic Z-scores Rnet are represented as: (i) R0: xylose grown cells – cellobiose grown cells; (ii) R1: α-cellulose grown cells – cellobiose grown cells; and (iii) R2: xylan grown cells – cellobiose grown cells. For any protein or RNA transcripts, a negative value represents higher expression on cellobiose, while a positive value represents higher expression in any of the other corresponding substrate. Signal to Noise ratios (S/N) of individual genes under two comparing conditions are given. S/N0: xylose grown cells vs cellobiose grown cells; S/N1: α-cellulose grown cells – cellobiose grown cells; S/N2: xylan grown cells – cellobiose grown cells. Genes with a S/N value 2.8 or greater have a false discovery rate (FDR) 10 % or less. CB, Cellobiose; AC, α-cellulose; Numbers in brackets indicate biological replicate. (XLSX 817 kb)
DOI: 10.6084/m9.figshare.c.3602033_d1
title: Additional file 1: Figure S1. of Improved transcription and translation with L-leucine stimulation of mTORC1 in Roberts syndrome

description: Quantitation of Western blotting in Fig. 1a and b. Figure S2. Gene transcription and translation pattern of WT cells and ESCO2-Corrected cells. Figure S3. The boxplots display the show expression of mRNAs with 5â  TOP sequences (a), PRTE sequences (b), and Babel genes (c). Figure S4. Motif and GO terms associated with genes with increased translational efficiency upon L-leucine treatment in RBS cells. Figure S5. mTORC2 show regulated genes do not show a coherent response to L-leucine. Figure S6. GTL2-regulated miRNAs are increased in RBS cells independent of L-Leu. Figure S7. Homeobox (HOX) gene expression is reduced in RBS cells. (ZIP 4.64 MB)
DOI: 10.15468/dl.f8qzvt
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mammalia",
 "Geometry POLYGON ((-88.18462 20.84599, -88.08824 20.84599, -88.08824 20.93542, -88.18462 20.93542, -88.18462 20.84599))",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material citation)"
 ]
 }
 }
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032458-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3602084_d1
title: Additional file 2: Table S1. of Circulating microRNAs as biomarkers for rituximab therapy, in neuromyelitis optica (NMO)

description: miRNA normalized counts in patients with NMO. (XLSX 157Â kb)
DOI: 10.15468/dl.753e8p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macrurus pectoralis Gilbert, 1892",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032461-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.27948810
title: The five-years overall survival and recurrence free survival of neoadjuvant systemic therapy in breast cancer Sudanese patients: A retrospective comparative study

description: Questionnaire of the manuscript entitled "The five-years overall survival and recurrence free survival of neoadjuvant systemic therapy in breast cancer Sudanese patients: A retrospective comparative study"
DOI: 10.6084/m9.figshare.27948810.v1
title: The five-years overall survival and recurrence free survival of neoadjuvant systemic therapy in breast cancer Sudanese patients: A retrospective comparative study

description: Questionnaire of the manuscript entitled "The five-years overall survival and recurrence free survival of neoadjuvant systemic therapy in breast cancer Sudanese patients: A retrospective comparative study"
DOI: 10.6084/m9.figshare.c.3602108_d4
title: Additional file 6: of The expression pattern of matrix-producing tumor stroma is of prognostic importance in breast cancer

description: Information in Additional file 10 in Excel format. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3602123_d2
title: Additional file 2: of Extent of pre-translational regulation for the control of nucleocytoplasmic protein localization

description: Classification of all NLS motifs considered in this study, including their sequence, class, regulation modes, number of encoding transcripts and number of encoding exons. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3602132_d1
title: MOESM1 of Draft genome sequence of non-shiga toxin-producing Escherichia coli O157 NCCP15738

description: Additional files 1: Table S1. Bacterial strain list used for phylogenetic analysis.
DOI: 10.6084/m9.figshare.c.3602108_d5
title: Additional file 5: of The expression pattern of matrix-producing tumor stroma is of prognostic importance in breast cancer

description: R object containing signatures defined in reference [17]. (RDATA 704 bytes)
DOI: 10.6084/m9.figshare.c.3602132_d2
title: MOESM3 of Draft genome sequence of non-shiga toxin-producing Escherichia coli O157 NCCP15738

description: Additional files 3: Table S3. Lateral flagella genes of non-STEC O157 NCCP15738.
DOI: 10.6084/m9.figshare.c.3602132_d3
title: MOESM2 of Draft genome sequence of non-shiga toxin-producing Escherichia coli O157 NCCP15738

description: Additional files 2: Table S2. Annotated genes of non-STEC O157 NCCP15738 using RAST server.
DOI: 10.6084/m9.figshare.c.3602138_d1
title: Additional file 3: Table S2. of Identification of internalin-A-like virulent proteins in Leishmania donovani

description: Probable Inl-A-like LRR regions within the L. donovani Inl-A-like proteins. (XLS 25 kb)
DOI: 10.6084/m9.figshare.c.3602138_d3
title: Additional file 2: Table S1. of Identification of internalin-A-like virulent proteins in Leishmania donovani

description: List of L. donovani proteins showing similarity to bacterial virulence factors enlisted in VFDB database [12]. (XLS 33 kb)
DOI: 10.6084/m9.figshare.c.3602135_d4
title: Additional file 1: of Development of genome-wide InDel markers and their integration with SSR, DArT and SNP markers in single barley map

description: Single genetic map consisting of SSR, DarTs, SNP and InDel markers in barley. The marker names, physical positions, chromosome positions, primer sequences, amplicon, InDels and references are listed in the file. # means that the markers were not anchored to POPSEQ genetic maps, but could be anchored to Morex physical maps. (XLSX 378 kb)
DOI: 10.6084/m9.figshare.c.3602108_d7
title: Additional file 4: of The expression pattern of matrix-producing tumor stroma is of prognostic importance in breast cancer

description: The R code used to generate signatures, figures and tables. (R 31Â kb)