cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/136768
title: Transmissometer data collected during research cruise PE20-03 using a WETLabs C-Star instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136767
title: TSG (Thermosalinograph) data collected during research cruise PE20-03 using a SeaBird SBE-21 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/136773
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise PE20-04 using a Hawaii UHDAS instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.6962215
title: Image data for bioRxiv article named: mtFociCounter - Reproducible, open source and quantitative single-cell analysis of mitochondrial nucleoids and other foci

description: Raw imaging data to reproduce and test the findings of the bioRxiv article: <strong>mtFociCounter </strong>- Reproducible, open source and quantitative single-cell analysis of mitochondrial nucleoids and other foci. It contains data from three imaging days and 2 or three technical replicates on each day.
DOI: 10.5281/zenodo.6962214
title: Image data for bioRxiv article named: mtFociCounter - Reproducible, open source and quantitative single-cell analysis of mitochondrial nucleoids and other foci

description: Raw imaging data to reproduce and test the findings of the bioRxiv article: <strong>mtFociCounter </strong>- Reproducible, open source and quantitative single-cell analysis of mitochondrial nucleoids and other foci. It contains data from three imaging days and 2 or three technical replicates on each day.
DOI: 10.7284/112440
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise PE13-10 using a RDI OS-75 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116160
title: Anemometer data collected during research cruise PE13-10 using a RMYoung 50260 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111936
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise PE13-10 using a SeaBird SBE-911+ instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116557
title: Meteorological Station data collected during research cruise PE13-10 using a CWS Magellan instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112442
title: Transmissometer data collected during research cruise PE13-10 using a WETLabs C-Star instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/147203
title: Gyrocompass data collected during research cruise PE13-20 using a Sperry NAVIGAT X MK 1 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116652
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise PE14-13 using a RDI OS-75 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116656
title: Anemometer data collected during research cruise PE14-13 using a RMYoung 50260 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116659
title: Barometer data collected during research cruise PE14-13 using a Vaisala PTB101B instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124639
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise PE14-13 using a SeaBird SBE-911+ instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116662
title: Gyrocompass data collected during research cruise PE14-13 using a Sperry NAVIGAT X MK 1 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116660
title: Hygrometer data collected during research cruise PE14-13 using a Vaisala HMP45 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116661
title: Meteorological Station data collected during research cruise PE14-13 using a CWS Magellan instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116651
title: TSG (Thermosalinograph) data collected during research cruise PE14-13 using a SeaBird SBE-21 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126341
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise PE16-13 using a Hawaii UHDAS instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124479
title: Barometer data collected during research cruise PE16-13 using a Vaisala PTB101B instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124480
title: Hygrometer data collected during research cruise PE16-13 using a Vaisala HMP45 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124482
title: TSG (Thermosalinograph) data collected during research cruise PE16-13 using a SeaBird SBE-21 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124493
title: Barometer data collected during research cruise PE16-16 using a Vaisala PTB101B instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124494
title: Hygrometer data collected during research cruise PE16-16 using a Vaisala HMP45 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124495
title: Transmissometer data collected during research cruise PE16-16 using a WETLabs C-Star instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.3886/e175541
title: Forecasting Undergraduate Majors: A Natural Language Approach (AERA OPEN)

description: This Repository contains the code related to the AERA Open Major Forecasting Paper <br>Abstract:<br>This Repository contains the code related to the AERA Open Major Forecasting Paper<br><br>Abstract: Commitment to a major is a fateful step in an undergraduate education, yet the relationship between courses taken early in an academic career and ultimate major issuance remains little studied at scale. Using transcript data capturing the academic careers of 26,892 undergraduates enrolled at a private university between 2000 and 2020, we describe enrollment histories using natural-language methods and vector embeddings to forecast terminal major on the basis of course sequences beginning at college entry. We find that (I) a student's very first enrolled course predicts their major thirty times better than random guessing and more than a third better than majority-class voting, (II) modeling strategies substantially influence forecasting metrics, and (III) course portfolios vary substantially within majors, such that students with the same major exhibit relatively modest overlap.<br><br><br>Due to the PII nature of the data as well as to protect the underlying institution, data will not be available in this repository. <br>If interested in obtaining the data, contact Mitchell Stevens stevens4@stanford.edu.<br><br>see the readme in the code folder for additional details on how to execute the code.
DOI: 10.3886/e175541v1
title: Forecasting Undergraduate Majors: A Natural Language Approach (AERA OPEN)

description: This Repository contains the code related to the AERA Open Major Forecasting Paper <br>Abstract:<br>This Repository contains the code related to the AERA Open Major Forecasting Paper<br><br>Abstract: Commitment to a major is a fateful step in an undergraduate education, yet the relationship between courses taken early in an academic career and ultimate major issuance remains little studied at scale. Using transcript data capturing the academic careers of 26,892 undergraduates enrolled at a private university between 2000 and 2020, we describe enrollment histories using natural-language methods and vector embeddings to forecast terminal major on the basis of course sequences beginning at college entry. We find that (I) a student's very first enrolled course predicts their major thirty times better than random guessing and more than a third better than majority-class voting, (II) modeling strategies substantially influence forecasting metrics, and (III) course portfolios vary substantially within majors, such that students with the same major exhibit relatively modest overlap.<br><br><br>Due to the PII nature of the data as well as to protect the underlying institution, data will not be available in this repository. <br>If interested in obtaining the data, contact Mitchell Stevens stevens4@stanford.edu.<br><br>see the readme in the code folder for additional details on how to execute the code.
DOI: 10.6084/m9.figshare.19768174.v9
title: Chemical Multiverse: An Expanded View of Chemical Space

description: Technological advances and practical applications of the chemical space concept in drug discovery, natural product research, and several other research areas are continuously attracting the scientific community´s attention. The current large- and ultra-large chemical spaces are associated not only with the significant increase in the number of compounds that can potentially be made and exist, but also in the increasing number of experimental and calculated descriptors that are emerging that encode the molecular structure and/or property aspects of the molecules. Due to the importance and continued evolution of compound libraries, herein we review definitions proposed in the literature for chemical space and we emphasize the approaches to generate a consensus view of the chemical space. We also introduce the concept of<em> chemical multiverse</em> as an alternative view of the chemical space.
DOI: 10.7284/126357
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise PE17-05B using a Hawaii UHDAS instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124562
title: Barometer data collected during research cruise PE17-05B using a Vaisala PTB101B instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124563
title: Hygrometer data collected during research cruise PE17-05B using a Vaisala HMP45 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124564
title: Transmissometer data collected during research cruise PE17-05B using a WETLabs C-Star instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127682
title: TSG (Thermosalinograph) data collected during research cruise PE17-11 using a SeaBird SBE-21 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127696
title: TSG (Thermosalinograph) data collected during research cruise PE17-13 using a SeaBird SBE-21 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.20483958
title: Chemical Multiverse: An Expanded View of Chemical Space

description: Technological advances and practical applications of the chemical space concept in drug discovery, natural product research, and several other research areas are continuously attracting the scientific community´s attention. The current large- and ultra-large chemical spaces are associated not only with the significant increase in the number of compounds that can potentially be made and exist, but also in the increasing number of experimental and calculated descriptors that are emerging that encode the molecular structure and/or property aspects of the molecules. Due to the importance and continued evolution of compound libraries, herein we review definitions proposed in the literature for chemical space and we emphasize the approaches to generate a consensus view of the chemical space. We also introduce the concept of<em> chemical multiverse</em> as an alternative view of the chemical space.
DOI: 10.6084/m9.figshare.20483958.v1
title: Chemical Multiverse: An Expanded View of Chemical Space

description: Technological advances and practical applications of the chemical space concept in drug discovery, natural product research, and several other research areas are continuously attracting the scientific community´s attention. The current large- and ultra-large chemical spaces are associated not only with the significant increase in the number of compounds that can potentially be made and exist, but also in the increasing number of experimental and calculated descriptors that are emerging that encode the molecular structure and/or property aspects of the molecules. Due to the importance and continued evolution of compound libraries, herein we review definitions proposed in the literature for chemical space and we emphasize the approaches to generate a consensus view of the chemical space. We also introduce the concept of<em> chemical multiverse</em> as an alternative view of the chemical space.
DOI: 10.6084/m9.figshare.20323722.v3
title: Sense of Virtual Community

description: Dataset R code for replication Questionnaire Validity tables FIMIX-PLS Fit Indices Discriminant Validity results
DOI: 10.6084/m9.figshare.19768174
title: Chemical Multiverse

description: Technological advances and practical applications of the chemical space concept in drug discovery, natural product research, and several other research areas are continuously attracting the scientific community´s attention. The current large- and ultra-large chemical spaces are associated not only with the significant increase in the number of compounds that can potentially be made and exist, but also in the increasing number of experimental and calculated descriptors that are emerging that encode the molecular structure and/or property aspects of the molecules. Due to the importance and continued evolution of compound libraries, herein we review definitions proposed in the literature for chemical space and we emphasize the approaches to generate a consensus view of the chemical space. We also introduce the concept of<em> chemical multiverse</em> as an alternative view of the chemical space.
DOI: 10.6084/m9.figshare.19768174.v10
title: Chemical Multiverse: An Expanded View of Chemical

description: Technological advances and practical applications of the chemical space concept in drug discovery, natural product research, and several other research areas are continuously attracting the scientific community´s attention. The current large- and ultra-large chemical spaces are associated not only with the significant increase in the number of compounds that can potentially be made and exist, but also in the increasing number of experimental and calculated descriptors that are emerging that encode the molecular structure and/or property aspects of the molecules. Due to the importance and continued evolution of compound libraries, herein we review definitions proposed in the literature for chemical space and we emphasize the approaches to generate a consensus view of the chemical space. We also introduce the concept of<em> chemical multiverse</em> as an alternative view of the chemical space.
DOI: 10.6084/m9.figshare.20483970
title: Notarius cookei RB0304 decontaminated FSCR

description: .....
DOI: 10.6084/m9.figshare.20483970.v1
title: Notarius cookei RB0304 decontaminated FSCR

description: .....
DOI: 10.6084/m9.figshare.20483979
title: Nisaetus floris decontaminated FSCR

description: ......
DOI: 10.6084/m9.figshare.20483979.v1
title: Nisaetus floris decontaminated FSCR

description: ......
DOI: 10.6084/m9.figshare.20483982
title: Octopus americanus decontaminated FSCR

description: ......
DOI: 10.6084/m9.figshare.20483982.v1
title: Octopus americanus decontaminated FSCR

description: ......
DOI: 10.6084/m9.figshare.20483841
title: Human minor intron-containing gene GO term enrichment vs. human-fungi ortholog background

description: List of GO terms with significant enrichment in human minor intron-containing genes vs. background of human-<em>Rhizophagus irregularis</em> orthologs.
DOI: 10.6084/m9.figshare.20483841.v1
title: Human minor intron-containing gene GO term enrichment vs. human-fungi ortholog background

description: List of GO terms with significant enrichment in human minor intron-containing genes vs. background of human-<em>Rhizophagus irregularis</em> orthologs.
DOI: 10.6084/m9.figshare.20483655
title: Minor (U12-type) intron metadata for thousands of eukaryotic genomes

description: Information about minor introns and their containing genes for thousands of eukaryotic genomes. <br> The columns in the file are: Species: full species name Abbreviation: species name abbreviation Kingdom/phylum: taxonomic info as assigned by NCBI Accession: associated accession ID (dependent on source) Assembly: assembly ID Tax. ID: taxonomic ID (NCBI) Minor intron density (%): percentage of annotated introns which are minor (U12) type Total minor introns: number of annotated minor introns Total introns: total number of annotated introns Corrected minor introns: introns with non-canonical boundaries in the original annotations which contain strong minor-like motifs nearby, "corrected" to the new boundaries; may be enriched for false positives depending on annotation quality BUSCO (%): complete BUSCO score Confident call: "u12-" = confidently lacking minor introns, "u12+" confidently containing minor introns; integrates information about BUSCO score and the presence/absence of minor snRNAs Minor snRNAs: names of any minor snRNAs found in the genome Intron position MWU p-value: the p-value of a two-sided Mann-Whitney U test between major and minor intron positions within their containing genes Median minor intron position: the median position of minor introns within their containing genes Median major intron position: as above, for major introns Median MIG length: the median length (bp) of minor intron-containing genes (sum of the coding sequences) Median non-MIG length: as above, for genes without minor introns Median minor intron length (bp) Median major intron length (bp) Intron length MWU p-value: the p-value of a two-sided Mann-Whitney U test between the lengths of major and minor introns Genome retrieval date Annotation retrieval date<br>
DOI: 10.17632/8n7gc8zfdf.1
title: data for "Distribution areas and factors controlling deep-water corals in the South China Sea"

description: The data included species classification and geochemical information of deep-water corals in the South China Sea, including carbon and oxygen isotopes, major and trace elements, rare earth elements, and so on.
DOI: 10.17632/ktb3yyj7fr.1
title: Supplemental Food for Biological Control of Poinsettia Thrips

description: The decapsulated cysts of the brine shrimp Artemia franciscana were tested as a supplemental food to support populations of the predatory thrips Franklinothrips vespiformis for controlling the poinsettia thrips Echinothrips americanus in greenhouses. We quantified populations of E. americanus and F. vespiformis on lima beans for multiple weeks in the presence or absence of supplemental food. These data were analyzed and presented in figures 1-4 in the publication "Control of Poinsettia Thrips Echinothrips americanus Morgan (Thysanoptera: Thripidae) on Lima Bean by Franklinothrips vespiformis Crawford (Thysanoptera: Aeolothripidae) using Artemia Cysts as Supplemental Food."
DOI: 10.6084/m9.figshare.20459835
title: Use and Quality of Blood Cultures for the Diagnosis of Blood-stream Infections: A Cross-sectional Study in the Ho Teaching Hospital, Ghana; 2019-2021.

description: Bloodstream Infections (BSI) are associated with severe morbidity and mortality. Blood Culture and Drug Susceptibility Testing (CDST) remains vital for the diagnosis and management of BSI. Using retrospective routine medical and laboratory records, we described blood culture requests by clinicians and the quality of CDST processes for the diagnosis of BSI among patients admitted to the Ho Teaching Hospital in Ghana from 2019 to 2021. Of 4,278 patients with suspected BSI, only 8% (351/4,278) had blood CDST requested, with the majority of indications being pneumonia (40%) and neonatal sepsis (22%). Of the 94% (329/351) of blood cultures processed and reported, only 7% (22/329) were culture positive, <em>Klebsiella spp.</em> being the most frequently recovered pathogen (4/22). Of the Gram-negative rod isolates, 8/19 exhibited Multi Drug Resistance. The median lead time from admission to blood CDST reporting was 10 days (IQR: 7– 14). Likely contaminants were recovered from 16% of the specimens. Targeted interventions are required to enhance a) the utilisation of blood CDST by clinicians, b) the quality of laboratory processes and c) Antimicrobial Resistance Surveillance.
DOI: 10.6084/m9.figshare.20459835.v1
title: Use and Quality of Blood Cultures for the Diagnosis of Blood-stream Infections: A Cross-sectional Study in the Ho Teaching Hospital, Ghana; 2019-2021.

description: Bloodstream Infections (BSI) are associated with severe morbidity and mortality. Blood Culture and Drug Susceptibility Testing (CDST) remains vital for the diagnosis and management of BSI. Using retrospective routine medical and laboratory records, we described blood culture requests by clinicians and the quality of CDST processes for the diagnosis of BSI among patients admitted to the Ho Teaching Hospital in Ghana from 2019 to 2021. Of 4,278 patients with suspected BSI, only 8% (351/4,278) had blood CDST requested, with the majority of indications being pneumonia (40%) and neonatal sepsis (22%). Of the 94% (329/351) of blood cultures processed and reported, only 7% (22/329) were culture positive, <em>Klebsiella spp.</em> being the most frequently recovered pathogen (4/22). Of the Gram-negative rod isolates, 8/19 exhibited Multi Drug Resistance. The median lead time from admission to blood CDST reporting was 10 days (IQR: 7– 14). Likely contaminants were recovered from 16% of the specimens. Targeted interventions are required to enhance a) the utilisation of blood CDST by clinicians, b) the quality of laboratory processes and c) Antimicrobial Resistance Surveillance.
DOI: 10.6084/m9.figshare.20483961
title: The impact of relationship to cancer patient and extent of caregiving on adherence to cancer screening in a diverse inner-city community: Dataset.sav

description: Relevant data from the survey were encoded into variables for the manuscript. The complete dataset is included here, but only participants with complete data on a family member with cancer were included in manuscript analyses.
DOI: 10.18112/openneuro.ds004230.v2.2.2
title: First-in-human evaluation of [11C]PS13, a novel PET radioligand, to quantify cyclooxygenase-1 in the brain
DOI: 10.6084/m9.figshare.20484153
title: Figure Data

description: Data used to generate figures.