cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34808/y0pf-r418
title: Ganglioneuroblastoma - Female, 2 - Tissue image [6030730027629221]

description: This is the histopathological image of HEART, MEDIASTINUM, AND PLEURA tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 2Clinical description: Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: NEUROEPITHELIOMATOUS NEOPLASMSDiagnosis: GanglioneuroblastomaResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical biopsyTopography: RESPIRATORY SYSTEM AND INTRATORACIC ORGANSOrgan: HEART, MEDIASTINUM, AND PLEURATissue: Mediastinum, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/a58d-1f96
title: Precursor T-cell lymphoblastic leukemia - Male, 4 - Tissue image [6030730027645491]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 4Clinical description: Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: LYMPHOID LEUKEMIAS (C42.1)Diagnosis: Precursor T-cell lymphoblastic leukemiaResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical specimenTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Supraclavicular lymph nodeType of staining: positive/IHCStaining: Not applicableAntibody: CD 10Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.5281/zenodo.6611645
title: Harmonized Cultural Access & Participation Dataset for Music

description: Changes since the last version: in the .csv export there was a naming problem. - `visit_concert`: This is a standard CAP variables about visiting frequencies, in numeric form. <br> - `fct_visit_concert`: This is a standard CAP variables about visiting frequencies, in categorical form. <br> - `is_visit_concert`: binary variable, 0 if the person had not visited concerts in the previous 12 months.<br> - `artistic_activity_played_music`: A variable of the frequency of playing music as an amateur or professional practice, in some surveys we have only a binary variable (played in the last 12 months or not) in other we have frequencies. We will convert this into a binary variable. <br> - `fct_artistic_activity_played_music`: The `artistic_activity_played_music` in categorical representation.<br> - `artistic_activity_sung`: A variable of the frequency of singing as an amateur or professional practice, like played_muisc. Because of the liturgical use of singing, and the differences of religious practices among countries and gender, this is a significantly different variable from played_music.<br> - `fct_artistic_activity_sung`: The `artistic_activity_sung` variable in categorical representation.<br> - `age_exact`: The respondent’s age as an integer number. <br> - `country_code`: an ISO country code<br> - `geo`: an ISO code that separates Germany to the former East and West Germany, and the United Kingdom to Great Britain and Northern Ireland, and Cyprus to Cyprus and the Turiksh Cypriot community.[we may leave Turkish Cyprus out for practical reasons.]<br> - `age_education`: This is a harmonized education proxy. Because we work with the data of more than 30 countries, education levels are difficult to harmonize, and we use the Eurobarometer standard proxy, age of leaving education. It is a specially coded variable, and we will re-code them into two variables, `age_education` and `is_student`. <br> - `is_student`: is a dummy variable for the special coding in age_education for “still studying”, i.e. the person does not have yet a school leaving age. It would be tempting to impute `age` in this case to `age_education`, but we will show why this is not a good strategy.<br> - `w`, `w1`: Post-stratification weights for the 15+ years old population of each country. Use `w1` for averages of `geo` entities treating Northern Ireland, Great Britain, the United Kingdom, the former GDR, the former West Germany, and Germany as geographical areas. Use `w` when treating the United Kingdom and Germany as one territory.<br> - `wex`: Projected weight variable. For weighted average values, use `w`, `w1`, for projections on the population size, i.e., use with sums, use `wex`.<br> - `id`: The identifier of the original survey.<br> - `rowid``: A new unique identifier that is unique in all harmonized surveys, i.e., remains unique in the harmonized dataset.
DOI: 10.5281/zenodo.5917741
title: Harmonized Cultural Access & Participation Dataset for Music

description: Changes since the last version: in the .csv export there was a naming problem. - `visit_concert`: This is a standard CAP variables about visiting frequencies, in numeric form. <br> - `fct_visit_concert`: This is a standard CAP variables about visiting frequencies, in categorical form. <br> - `is_visit_concert`: binary variable, 0 if the person had not visited concerts in the previous 12 months.<br> - `artistic_activity_played_music`: A variable of the frequency of playing music as an amateur or professional practice, in some surveys we have only a binary variable (played in the last 12 months or not) in other we have frequencies. We will convert this into a binary variable. <br> - `fct_artistic_activity_played_music`: The `artistic_activity_played_music` in categorical representation.<br> - `artistic_activity_sung`: A variable of the frequency of singing as an amateur or professional practice, like played_muisc. Because of the liturgical use of singing, and the differences of religious practices among countries and gender, this is a significantly different variable from played_music.<br> - `fct_artistic_activity_sung`: The `artistic_activity_sung` variable in categorical representation.<br> - `age_exact`: The respondent’s age as an integer number. <br> - `country_code`: an ISO country code<br> - `geo`: an ISO code that separates Germany to the former East and West Germany, and the United Kingdom to Great Britain and Northern Ireland, and Cyprus to Cyprus and the Turiksh Cypriot community.[we may leave Turkish Cyprus out for practical reasons.]<br> - `age_education`: This is a harmonized education proxy. Because we work with the data of more than 30 countries, education levels are difficult to harmonize, and we use the Eurobarometer standard proxy, age of leaving education. It is a specially coded variable, and we will re-code them into two variables, `age_education` and `is_student`. <br> - `is_student`: is a dummy variable for the special coding in age_education for “still studying”, i.e. the person does not have yet a school leaving age. It would be tempting to impute `age` in this case to `age_education`, but we will show why this is not a good strategy.<br> - `w`, `w1`: Post-stratification weights for the 15+ years old population of each country. Use `w1` for averages of `geo` entities treating Northern Ireland, Great Britain, the United Kingdom, the former GDR, the former West Germany, and Germany as geographical areas. Use `w` when treating the United Kingdom and Germany as one territory.<br> - `wex`: Projected weight variable. For weighted average values, use `w`, `w1`, for projections on the population size, i.e., use with sums, use `wex`.<br> - `id`: The identifier of the original survey.<br> - `rowid``: A new unique identifier that is unique in all harmonized surveys, i.e., remains unique in the harmonized dataset.
DOI: 10.34808/weaq-c429
title: Precursor T-cell lymphoblastic leukemia - Male, 4 - Tissue image [6030730027635021]

description: This is the histopathological image of HEART, MEDIASTINUM, AND PLEURA tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: VS200 Olympus slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 4Clinical description: Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: LYMPHOID LEUKEMIAS (C42.1)Diagnosis: Precursor T-cell lymphoblastic leukemiaResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical specimenTopography: RESPIRATORY SYSTEM AND INTRATORACIC ORGANSOrgan: HEART, MEDIASTINUM, AND PLEURATissue: Mediastinum, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: VS200 OlympusLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/gnbz-0917
title: Hodgkin lymphoma, nodular sclerosis, NOS - Female, 14 - Tissue image [6030730027632331]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: VS200 Olympus slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 14Clinical description: Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: CHOROBA HODGKINADiagnosis: Hodgkin lymphoma, nodular sclerosis, NOSResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical specimenTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Supraclavicular lymph nodeType of staining: positive/IHCStaining: Not applicableAntibody: CD 45 (LCA)Technology:Equipment: VS200 OlympusLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/bc0d-r388
title: Teratoma with somatic type malignancies - Female, 1 - Tissue image [603073002762641]

description: This is the histopathological image of OTHER AND ILL-DEFINED SITES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: VS200 Olympus slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 1Clinical description: Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: GERM CELL NEOPLASMSDiagnosis: Teratoma with somatic type malignanciesResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical specimenTopography: OTHER AND ILL-DEFINED SITESOrgan: OTHER AND ILL-DEFINED SITESTissue: Sacrococcygeal region, NOSType of staining: positive/IHCStaining: Not applicableAntibody: CD 117Technology:Equipment: VS200 OlympusLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/rhd3-3h07
title: Ganglioneuroblastoma - Female, 2 - Tissue image [6030730027625261]

description: This is the histopathological image of HEART, MEDIASTINUM, AND PLEURA tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 2Clinical description: Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: NEUROEPITHELIOMATOUS NEOPLASMSDiagnosis: GanglioneuroblastomaResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical biopsyTopography: RESPIRATORY SYSTEM AND INTRATORACIC ORGANSOrgan: HEART, MEDIASTINUM, AND PLEURATissue: Mediastinum, NOSType of staining: positive/IHCStaining: Not applicableAntibody: SynaptophysinTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/rhqx-d664
title: Intramuscular hemangioma - Male, 10 - Tissue image [6030730027641831]

description: This is the histopathological image of CONNECTIVE, SUBCUTANEOUS AND OTHER SOFT TISSUES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: VS200 Olympus slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 10Clinical description: Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: BLOOD VESSEL TUMORSDiagnosis: Intramuscular hemangiomaResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical specimenTopography: CONNECTIVE, SUBCUTANEOUS AND OTHER SOFT TISSUESOrgan: CONNECTIVE, SUBCUTANEOUS AND OTHER SOFT TISSUESTissue: Connective, subcutaneous and other soft tissues of forearmType of staining: positive/IHCStaining: Not applicableAntibody: Ki-67Technology:Equipment: VS200 OlympusLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/8q7y-2102
title: Synovial sarcoma, biphasic - Male, 12 - Tissue image [6030730027633971]

description: This is the histopathological image of CONNECTIVE, SUBCUTANEOUS AND OTHER SOFT TISSUES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: VS200 Olympus slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 12Clinical description: Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: SYNOVIAL-LIKE NEOPLASMSDiagnosis: Synovial sarcoma, biphasicResult of the histopathological examination: Sample:Material: FFPECollecting method: Excision of lesionsTopography: CONNECTIVE, SUBCUTANEOUS AND OTHER SOFT TISSUESOrgan: CONNECTIVE, SUBCUTANEOUS AND OTHER SOFT TISSUESTissue: Connective, subcutaneous and other soft tissues of thighType of staining: positive/IHCStaining: Not applicableAntibody: CD 99Technology:Equipment: VS200 OlympusLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.5281/zenodo.6610439
title: Mitochondrial DNA sequencing results control and MELAS fibroblasts. Povea-Cabello, S. et al 2022.

description: Mitochondrial DNA sequencing results from control and MELAS patients-derived dermal fibroblasts. Povea-Cabello, S. et al 2022.
DOI: 10.5281/zenodo.6610438
title: Mitochondrial DNA sequencing results control and MELAS fibroblasts. Povea-Cabello, S. et al 2022.

description: Mitochondrial DNA sequencing results from control and MELAS patients-derived dermal fibroblasts. Povea-Cabello, S. et al 2022.
DOI: 10.34808/wkyq-e257
title: Nerve sheath tumor, NOS - Female, 15 - Tissue image [603073002763621]

description: This is the histopathological image of CONNECTIVE, SUBCUTANEOUS AND OTHER SOFT TISSUES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: VS200 Olympus slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 15Clinical description: Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: NERVE SHEATH TUMORSDiagnosis: Nerve sheath tumor, NOSResult of the histopathological examination: Sample:Material: FFPECollecting method: Excision of lesionsTopography: CONNECTIVE, SUBCUTANEOUS AND OTHER SOFT TISSUESOrgan: CONNECTIVE, SUBCUTANEOUS AND OTHER SOFT TISSUESTissue: Connective, subcutaneous and other soft tissues of head, face, and neckType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: VS200 OlympusLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/n256-ka57
title: Hodgkin lymphoma, nodular sclerosis, NOS - Female, 12 - Tissue image [6030730027626751]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: VS200 Olympus slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 12Clinical description: Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: CHOROBA HODGKINADiagnosis: Hodgkin lymphoma, nodular sclerosis, NOSResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical specimenTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Cervical lymph nodeType of staining: positive/IHCStaining: Not applicableAntibody: CD 30Technology:Equipment: VS200 OlympusLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/dx5b-jm40
title: Ameloblastic fibro-odontoma - Male, 3 - Tissue image [6030730027649111]

description: This is the histopathological image of BONES, JOINTS AND ARTICULAR CARTILAGE OF OTHER AND UNSPECIFIED SITES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 3Clinical description: Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: ODONTOGENIC TUMORSDiagnosis: Ameloblastic fibro-odontomaResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical specimenTopography: BONES, JOINTS and ARTICULAR CARTILAGEOrgan: BONES, JOINTS AND ARTICULAR CARTILAGE OF OTHER AND UNSPECIFIED SITESTissue: MandibleType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.6084/m9.figshare.11869344.v1
title: Muscle recruitment and co-contraction when walking in young women with chronic lumbar pain

description: Abstract Introduction: The lumbar pain is the main musculoskeletal complaint reported by the active population, and it prevents daily activities such as walking. Objective: To assess muscle recruitment and the co-contraction of the trunk muscles during different walking speed in individuals with and without chronic lumbar pain. Method: Thirty-four sedentary young women attended the study, in which 18 belonged to the lumbar pain team (LPT) and 16 to the team without lumbar pain (WLP). We assessed the electromyography activity of the internal oblique (IO) local muscle and lumbar multifidus (MUL), and global external oblique (EO), abdominal rectus (AR) and lumbar iliocostalis (LIC), during walking. The electromyography analysis was performed from the average of the linear envelope value, normalized by the peak of muscle activation. The muscle co-contraction (IO/MUL, EO/LIC, AR/LIC, IO/EO, and the abdominal/paravertebral muscle groups) was calculated with the Falconer and Winter formula. The Shapiro-Wilk test, Multivariate Analysis, mixed Variance Analyses with Bonferroni post-hoc, and Pearson (p &lt; 0.05) correlation coefficient were made by the statistical analysis. Results: In the WLP we could notice that the higher the speed, the higher the MUL activation. The co-contraction data demonstrated that IO/MUL muscles activate 20% more in the LPT, during the preferred speed; however, in the WLP, the results showed that the higher the walking speed, the higher the EO/LIC (21.8%) and IO/MUL (17.8%) muscles activation. Conclusion: The recruitment of local muscles doesn’t differ among the evaluated groups and conditions; however, in WLP, the higher the MUL muscle action, the higher the walking speed.
DOI: 10.6084/m9.figshare.11869344
title: Muscle recruitment and co-contraction when walking in young women with chronic lumbar pain

description: Abstract Introduction: The lumbar pain is the main musculoskeletal complaint reported by the active population, and it prevents daily activities such as walking. Objective: To assess muscle recruitment and the co-contraction of the trunk muscles during different walking speed in individuals with and without chronic lumbar pain. Method: Thirty-four sedentary young women attended the study, in which 18 belonged to the lumbar pain team (LPT) and 16 to the team without lumbar pain (WLP). We assessed the electromyography activity of the internal oblique (IO) local muscle and lumbar multifidus (MUL), and global external oblique (EO), abdominal rectus (AR) and lumbar iliocostalis (LIC), during walking. The electromyography analysis was performed from the average of the linear envelope value, normalized by the peak of muscle activation. The muscle co-contraction (IO/MUL, EO/LIC, AR/LIC, IO/EO, and the abdominal/paravertebral muscle groups) was calculated with the Falconer and Winter formula. The Shapiro-Wilk test, Multivariate Analysis, mixed Variance Analyses with Bonferroni post-hoc, and Pearson (p &lt; 0.05) correlation coefficient were made by the statistical analysis. Results: In the WLP we could notice that the higher the speed, the higher the MUL activation. The co-contraction data demonstrated that IO/MUL muscles activate 20% more in the LPT, during the preferred speed; however, in the WLP, the results showed that the higher the walking speed, the higher the EO/LIC (21.8%) and IO/MUL (17.8%) muscles activation. Conclusion: The recruitment of local muscles doesn’t differ among the evaluated groups and conditions; however, in WLP, the higher the MUL muscle action, the higher the walking speed.
DOI: 10.34808/2m41-tf76
title: Teratoma with somatic type malignancies - Female, 1 - Tissue image [6030730027626481]

description: This is the histopathological image of OTHER AND ILL-DEFINED SITES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: VS200 Olympus slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 1Clinical description: Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: GERM CELL NEOPLASMSDiagnosis: Teratoma with somatic type malignanciesResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical specimenTopography: OTHER AND ILL-DEFINED SITESOrgan: OTHER AND ILL-DEFINED SITESTissue: Sacrococcygeal region, NOSType of staining: positive/IHCStaining: Not applicableAntibody: CK PAN (AE1/AE3)Technology:Equipment: VS200 OlympusLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/6k02-ws03
title: Burkitt lymphoma, NOS - Male, 6 - Tissue image [6030730027616571]

description: This is the histopathological image of RETROPERITONEUM AND PERITONEUM tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 6Clinical description: Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: MATURE B-CELL LYMPHOMASDiagnosis: Burkitt lymphoma, NOSResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical biopsyTopography: RETROPERITONEUM AND PERITONEUMOrgan: RETROPERITONEUM AND PERITONEUMTissue: Peritoneal cavityType of staining: positive/IHCStaining: Not applicableAntibody: CD 79Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk