cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.k4880m2
title: Data from: Comparative landscape genetics reveals the evolution of viviparity reduces genetic connectivity in fire salamanders

description: Evolutionary changes in reproductive mode may affect co-evolving traits,
 such as dispersal, though this subject remains largely underexplored. The
 shift from aquatic oviparous or larviparous reproduction to terrestrial
 viviparous reproduction in some amphibians entails skipping the aquatic
 larval stage and, thus, greater independence from water. Accordingly,
 amphibians exhibiting terrestrial viviparous reproduction may potentially
 disperse across a wider variety of sub-optimal habitats and increase
 population connectivity in fragmented landscapes compared to
 aquatic-breeding species. We investigated this hypothesis in the fire
 salamander (Salamandra salamandra), which exhibits both aquatic-
 (larviparity) and terrestrial-breeding (viviparity) strategies. We
 genotyped 426 larviparous and 360 viviparous adult salamanders for 13
 microsatellite loci and sequenced a mitochondrial marker for 133
 larviparous and 119 viviparous individuals to compare population
 connectivity and landscape resistance to gene flow within a landscape
 genetics framework. Contrary to our predictions, viviparous populations
 exhibited greater differentiation and reduced genetic connectivity
 compared to larviparous ones. Landscape genetic analyses indicate
 viviparity may be partially responsible for this pattern, as water courses
 comprised a significant barrier only in viviparous salamanders, likely due
 to their fully terrestrial life cycle. Agricultural areas and, to a lesser
 extent, topography also decreased genetic connectivity in both larviparous
 and viviparous populations. This study is one of very few to explicitly
 demonstrate the evolution of a derived reproductive mode affects patterns
 of genetic connectivity. Our findings open avenues for future research to
 better understand the eco-evolutionary implications underlying the
 emergence of terrestrial reproduction in amphibians.
description: genotypic
 dataGenotype profiles (13
 microsatellites) obtained from sampled fire salamanders in the larviparous
 and pueriparous plots. The genotypic data is displayed in GenAlex
 format.genotype_data.xlsxlarviparous plotIncludes 17 environmental raster layers, input files, and the R code used to perform optimization analyses in larviparous populations of S. salamandra.pueriparous plotIncludes 17 environmental raster layers, input files, and the R code used to perform optimization analyses in pueriparous populations of S. salamandra.
DOI: 10.5061/dryad.3bh25j0
title: Data from: Trophic interactions drive the emergence of diel vertical migration patterns: a game-theoretic model of copepod communities

description: Diel Vertical Migration (DVM), the daily movement of organisms through
 oceanic water columns, is mainly driven by spatio-temporal variations in
 light affecting the intensity of predator-prey interactions. Migration
 patterns of an organism are intrinsically linked to the distribution of
 its conspecifics, its prey, and its predators, each with their own fitness
 seeking imperatives. We present a mechanistic, trait-based model of DVM
 for the different components of a pelagic community. Specifically we
 consider size, sensory mode, and feeding mode as key traits, representing
 a community of copepods that prey on each other and are, in turn, preyed
 upon by fish. Using game theoretic principles, we explore the optimal
 distribution of the main groups of a planktonic pelagic food-web
 simultaneously. Within one single framework, our model reproduces a whole
 suite of observed patterns, such as size-dependent DVM patterns of
 copepods and reverse migrations. These patterns can only be reproduced
 when different trophic levels are considered at the same time. This study
 facilitates a quantitative understanding of the drivers of DVM, and is an
 important step towards mechanistically underpinned predictions of DVM
 patterns and biologically mediated carbon export.
description: Code Matlab codes necessary
 to plot the model. Contains: 1/ Main_code. The main code to run. 2/
 Params_multiple .The m file with the parameters used to run the model. 3/
 Migr_profile_medianes. The code necessary to plot the zooplankton
 migration envelopes. 4/ ciplot. An additional file needed to plot
 correctly the migration envelopes. code.zip
DOI: 10.5061/dryad.vb3g6p1
title: Data from: Longitudinal associations between diurnal cortisol variation and later life cognitive impairment

description: Objective: To determine whether HPAA dysfunction is prospectively
 associated with global cognitive impairment in later life Methods: This
 cross-cohort study integrates two large longitudinal datasets: Whitehall
 II and the National Survey for Health and Development (NSHD), on data
 collected in the Whitehall II study in 2002/2004, 2007/2009 and 2012/2013;
 and for NSHD in 2006/2010 and 2015. Serial salivary cortisol samples were
 collected multiple times within a 24-hour period at mean ages 61.2 and
 65.9 years in Whitehall II and at age 60-64 from NSHD participants.
 Cortisol profile is defined using cortisol awakening response (CAR) and
 am:pm ratio. Cognitive function was measured using the MMSE in Whitehall
 II and ACE-III in NSHD, harmonised into a thirty-point score. Models were
 adjusted for age, sex, diagnoses of hypertension, diabetes, BMI,
 educational attainment and interval between HPAA and cognitive
 assessments. Results: In fully adjusted models, increased am:pm cortisol
 ratio was prospectively associated with better later-life cognitive
 function years later (0.02 fewer errors per SD increase in am:pm cortisol
 ratio, p&lt;0.01) and verbal fluency (0.03 SD increase in verbal
 fluency per SD increase in am:pm ratio, p&lt;0.01). Increasing age,
 lower educational attainment, diagnosis of hypertension, diagnosis of
 diabetes and increased BMI were associated with worse cognitive function
 and poorer verbal fluency. There were no associations between depression
 and later-life cognition or reverse associations between cognition and
 later-life cortisol profiles. Conclusions: Loss of diurnal HPAA variation
 is evident in individuals subsequently experiencing more cognitive
 impairment. It may serve as an early pre-clinical marker of cognitive
 decline.
description: Supplementary Table
 1Supplementary Table
 2Supplementary Table
 3Supplementary Table
 4Supplementary Table
 5Supplementary table
 6Supplementary table
 7Supplementary Fig
 1
DOI: 10.5061/dryad.ps15hf5
title: Data from: Saposin B deficiency as a cause of adult-onset metachromatic leukodystrophy

description: N/A
description: Figure e-1. Brain MRI
 findings in two unrelated subjects with adult-onset MLD caused by ARSA
 mutations.Fenu_Figure_e-1_REVISED.docx
DOI: 10.5061/dryad.tq70kt3
title: Data from: Subcortical heterotopic gray matter brain malformations: classification study of 107 individuals

description: Objective: To better evaluate the imaging spectrum of subcortical
 heterotopic grey matter brain malformations (SUBH), we systematically
 reviewed neuroimaging and clinical data of 107 affected individuals.
 Methods: SUBH is defined as heterotopic gray matter, located within the
 white matter between the cortex and lateral ventricles. Four large brain
 malformation databases were searched for individuals these malformations;
 data on imaging, clinical outcomes and results of molecular testing were
 systematically reviewed and integrated with all previously published
 subtypes to create a single classification system. Results: Review of the
 databases revealed 107 patients with SUBH, the large majority scanned
 during childhood (84%), including more than half before 4 years (59%).
 Although most individuals had cognitive and/or motor disability, 19% had
 normal development. Epilepsy was documented in 69%. Additional brain
 malformations were common and included abnormalities of the corpus
 callosum (65/102, 64%), and, often, brainstem or cerebellum (47/106, 44%).
 Extent of the HET (unilateral or bilateral) did not influence the presence
 or age of onset of seizures. Although genetic testing was not
 systematically performed in this group, the sporadic occurrence and
 frequent asymmetry suggests either postzygotic mutations or prenatal
 disruptive events. Several rare, bilateral forms are caused by mutations
 in genes associated with cell proliferation and polarity (EML1, TUBB,
 KATNB1, CENPJ, GPSM2). Conclusion: This study reveals a broad clinical and
 imaging spectrum of heterotopic malformations and provides a framework for
 their classification.
description: data
 filesummary of imaging
 dataSUBH
 supp table 1.xlsx
DOI: 10.5061/dryad.5ds4833
title: Data from: Epidemiology of placenta previa accreta: a systematic review and meta-analysis

description: Objective To estimate the prevalence and incidence of placenta previa
 complicated by placenta accreta spectrum (PAS) and to examine the
 different criteria being used for the diagnosis. Design Systematic review
 and meta-analysis. Methods PubMed, Google Scholar, clinicalTrials.gov and
 MEDLINE were searched between August 1982 and September 2018 for studies
 reporting on placenta previa and placenta previa with PAS diagnosed in a
 defined obstetric population. Two independent reviewers performed the data
 extraction using a predefined protocol and assessed the risk of bias using
 the Newcastle-Ottawa scale for observational studies, with difference
 agreed by consensus. The primary outcomes were overall prevalence of
 placenta previa, incidence of PAS according to the type of placenta previa
 and the reported clinical outcomes including number of peri-partum
 hysterectomies and direct maternal mortality. The secondary outcomes
 included the criteria used for the prenatal ultrasound diagnosis of
 placenta previa and the criteria used to diagnose and grade PAS at birth.
 Results A total of 258 articles were reviewed and 13 retrospective and 7
 prospective studies were included in the analysis which reported on 587
 women with placenta previa and PAS. The median prevalence of placenta
 previa was 0.56% (IQR 0.39;1.24) whereas the median prevalence of placenta
 previa with PAS was 0.07% (IQR 0.05;0.16). The incidence of PAS in women
 with a placenta previa was 11.10% (IQR 7.65;17.35). The meta-analysis
 indicated a significant level of overall heterogeneity between study
 estimates for the prevalence of placenta previa (P&lt;.001), the
 prevalence of placenta previa with PAS and the incidence of PAS in the
 placenta previa cohort. The high heterogeneity between studies emphasizing
 the need to implement standardized protocols for the diagnoses of both
 placenta previa and PAS, including the type of placenta previa on
 ultrasound imaging and grading of villous invasiveness at delivery.
description: Jauniaux et al Final DB
 for MetaAnalysis for PPv & PAS study 22 Nov 18Data file spreadsheet
 used for meta-analysis
DOI: 10.5061/dryad.kp648r5
title: Data from: Longitudinal diffusion MRI as surrogate outcome measure for myelopathy in adrenoleukodystrophy

description: Objective: To prospectively determine the potential of diffusion MRI
 (dMRI) of the cervical spinal cord and the corticospinal tracts in brain
 as surrogate outcome measure for progression of myelopathy in men with
 adrenoleukodystrophy, as better outcome measures to quantify progression
 of myelopathy would enable clinical trials with less patients and shorter
 follow-up. Methods: Clinical assessment of myelopathy included Expanded
 Disability Status Scale (EDSS), Severity Scoring system for Progressive
 Myelopathy (SSPROM), timed up-and-go and 6-minute walk test. Applied dMRI
 metrics included fractional anisotropy, mean diffusivity, axial
 diffusivity and radial diffusivity. Results: Data was available for 33
 controls and 52 patients. First, cross-sectionally, differences between
 groups (controls vs. patients; controls vs. asymptomatic patients vs.
 symptomatic patients) were statistically significant for fractional
 anisotropy, mean diffusivity and radial diffusivity in spinal cord and
 brain corticospinal tracts (effect size 0.31-0.68). Correlations between
 dMRI metrics and clinical measures were moderate to strong (correlation
 coefficient 0.35-0.60). Second, longitudinally (n=36), change on clinical
 measures was significant after 2-year follow-up for EDSS, SSPROM and timed
 up-and-go (p≤0.021, effect size ≤0.14). Change on brain fractional
 anisotropy and radial diffusivity was slightly larger (p≤0.002, effect
 sizes 0.16-0.28). In addition, a statistically significant change was
 detectable in asymptomatic patients using brain dMRI and not using the
 clinical measures. Change on clinical measures did not correlate to change
 on dMRI metrics. Conclusions: Although effect sizes were small, our
 prospective data illustrate the potential of dMRI as surrogate outcome
 measures for progression of myelopathy in men with adrenoleukodystrophy.
description: Supplementary table
 1Description of subject
 enrollment and the availability of imaging data. Spinal cord imaging was
 added after the study had been initiated.Supplementary table
 2Change of dMRI metrics
 and clinical measures during follow-up including symptomatic patients and
 patients who became symptomatic during follow-upSupplementary table
 3Change of dMRI metrics
 and clinical measures during follow-up including asymptomatic
 patientsSupplementary table
 4Raw
 data on included patients
DOI: 10.5061/dryad.7jm87bt
title: Data from: Asymmetric ON-OFF processing of visual motion cancels variability induced by the structure of natural scenes

description: Animals detect motion using a variety of visual cues that reflect
 regularities in the natural world. Experiments in animals across phyla
 have shown that motion percepts incorporate both pairwise and triplet
 spatiotemporal correlations that could theoretically benefit motion
 computation. However, it remains unclear how visual systems assemble these
 cues to build accurate motion estimates. Here we use comprehensive
 measurements of fruit fly motion perception to show how flies combine
 local pairwise and triplet correlations to reduce variability in motion
 estimates across natural scenes. By generating synthetic images with
 statistics controlled by maximum entropy distributions, we showed that the
 observed improvement occurs only when light-dark asymmetries mimic natural
 ones. Thus, fly behavior suggests that asymmetric ON-OFF processing is
 tuned to the particular statistics of natural scenes. Since all animals
 encounter the world’s light-dark asymmetries, many visual systems are
 likely to use asymmetric ON-OFF processing to improve motion estimation.
description: ThirdOrderKernel_Data_For_Figure_RegenerationThis dataset contains the data needed to regenerate the figures. The code repository can be found in https://github.com/ClarkLabCode/ThirdOrderKernelCode.ThirdOrderKernel_Data.tar.gz
DOI: 10.5281/zenodo.18392999
title: KITOBXONLIK VA KITOBGA QIZIQISH TUSHUNCHALARINING ILMIY-NAZARIY ASOSLARI

description: Maqola boshlang‘ich sinf o‘quvchilarida kitobxonlik va mutolaa madaniyatini shakllantirishning ilmiy-nazariy asoslarini o‘rganadi. Unda jamiyat taraqqiyotida kitobxonlikning roli, kutubxona-axborot muassasalari, oila, maktab va o‘qituvchi-kutubxonachi hamkorligining ahamiyati ta’kidlanadi. Adabiyotlar tahlili, tadqiqot metodologiyasi, bolalar psixologiyasi, omillar: oilaviy tarbiya muammolari va sotsiologik tadqiqot natijalari asosida muammolar tahlil qilingan. Shu bilan birga oliy o‘quv yurtlari bitiruvchilarining pedagogik-psixologik tayyorgarligini takomillashtirish va o‘quv jarayonini mustaqil ishlar bilan uyg‘unlashtirish masalalariga to’xtalgan.
DOI: 10.5281/zenodo.18393000
title: KITOBXONLIK VA KITOBGA QIZIQISH TUSHUNCHALARINING ILMIY-NAZARIY ASOSLARI

description: Maqola boshlang‘ich sinf o‘quvchilarida kitobxonlik va mutolaa madaniyatini shakllantirishning ilmiy-nazariy asoslarini o‘rganadi. Unda jamiyat taraqqiyotida kitobxonlikning roli, kutubxona-axborot muassasalari, oila, maktab va o‘qituvchi-kutubxonachi hamkorligining ahamiyati ta’kidlanadi. Adabiyotlar tahlili, tadqiqot metodologiyasi, bolalar psixologiyasi, omillar: oilaviy tarbiya muammolari va sotsiologik tadqiqot natijalari asosida muammolar tahlil qilingan. Shu bilan birga oliy o‘quv yurtlari bitiruvchilarining pedagogik-psixologik tayyorgarligini takomillashtirish va o‘quv jarayonini mustaqil ishlar bilan uyg‘unlashtirish masalalariga to’xtalgan.
DOI: 10.5061/dryad.k2v4563
title: Data from: Search as a simple take-the-best heuristic

description: Humans commonly engage in a variety of search behaviours, for example when
 looking for an object, a partner, information, or a solution to a complex
 problem. The success or failure of a search strategy crucially depends on
 the structure of the environment and the constraints it imposes on the
 individuals. Here we focus on environments in which individuals have to
 explore the solution space gradually and where their reward is determined
 by one unique solution they choose to exploit. This type of environment
 has been relatively overlooked in the past despite being relevant to
 numerous real-life situations, such as spatial search and various
 problem-solving tasks. By means of a dedicated experimental design, we
 show that the search behaviour of experimental participants can be well
 described by a simple heuristic model. Both in rich and poor solution
 spaces, a take-the-best procedure that ignores all but one cue at a time
 is capable of reproducing a diversity of observed behavioural patterns.
 Our approach, therefore, sheds lights on the possible cognitive mechanisms
 involved in human search.
description: Experimental
 dataExperimental data
 collected in a lab environment. More information available at
 https://github.com/cuehs/search_heuristicmovement.csvparticipantParticipant's demographic data. More information at https://github.com/cuehs/search_heuristicstructureRelationship between level and landscape. More information at https://github.com/cuehs/search_heuristic
DOI: 10.5061/dryad.qp87q01
title: Data from: A Changhsingian (late Permian) nautiloid assemblage from Gujiao, South China

description: A c. 0.30 m thick cherty limestone bed in the Dalong Formation at Gujiao
 (Guizhou) yielded a highly diverse Changhsingian nautiloid assemblage. Its
 age is late Changhsingian, indicated by the co-occurring ammonoid
 Pseudotirolites sp. This assemblage is composed of nine species and five
 taxa in open nomenclature in nine genera, including one new genus and
 three new species: Neotainoceras zhaoi sp. nov., Nodopleuroceras
 gujiaoense sp. nov. and Gujiaonautilus longliensis gen. nov., sp. nov.
 Sholakoceras is for the first time recorded in South China. Compared with
 literature data from 52 sites in various regions worldwide, the material
 described here presents the most diverse Changhsingian nautiloid
 assemblage. Among the genera of the Gujiao assemblage, Pleuronautilus,
 Tainoceras and Liroceras are cosmopolitan, while the others are more
 endemic or genera known so far only from South China .
description: Measurements of the
 Changhsingian nautiloidsTable S1 Occurrences of
 the Changhsingian nautiloids
DOI: 10.5061/dryad.3295k54
title: Data from: Prediction of maize grain yield before maturity using improved temporal height estimates of unmanned aerial systems

description: Weekly unmanned aerial system (UAS) imagery was collected over the College
 Station, TX, 2017 Genomes to Fields (G2F) hybrid trial, across three
 environmental stress treatments, using two UAS platforms. The
 high-altitude (120-m) fixed-wing platform increased the fraction of
 variation attributed to genetics and had highly repeatable
 (R &gt; 60%) height estimates, increasing the genetic
 variance explained (10–40%) over traditional terminal plant height
 measurement (PHT TRML ∼30%), as well as over the
 low-altitude rotary-wing UAS platform (10–20%). A logistic function
 reduced the dimensionality (&gt;20 flights) of each UAS dataset to
 three parameters (inflection point, growth rate, and asymptote) and
 produced a more robust predictive model than independent flight dates,
 effectively summarizing ( R 2 &gt; 0.98)
 the UAS flight dates. The logistic model overcame the need to use specific
 flight dates when comparing different environments. The UAS height
 estimates (r = 0.36–0.48) doubled the correlations to grain yield
 in this G2F experiment compared with
 PHT TRML (r = 0.23–0.28). Parameters of the
 logistical function achieved equivalent correlations (r =
 0.30–0.46) to individual flight dates (r = 0.36–0.48), improving
 grain yield prediction by ∼400% ( R 2 =
 0.25–0.34) over PHTTRML ( R 2 =
 0.06–0.08). Incorporating other UAS-derived parameters beyond plant height
 may allow yield to be accurately predicted before maturity, speeding
 breeding programs. A new public R function to generate ESRI shapefiles for
 plot research is also described.
description: Anderson_Supplemental4Supplemental 4. Document containing UAS height estimates and logistic function parameter on a plot basis (Sheet 1) and pedigree based (sheet 2) for the 2017 G2F trials in College Station, TX. Additional excel sheets contain metric estimates for each trial on a plot basis across all flight (Sheets 3-5), as well as, agronomic trial data, manually measured agronomic traits, and ground truth measurements for each trial (sheets 6-8).
DOI: 10.5061/dryad.7pk843s
title: Data from: Natural history and long-term effects of variant protein reduction in non-V30M ATTR amyloidosis

description: No abstract
description: Table
 e1
DOI: 10.5061/dryad.3tp4r63
title: Data from: Effectiveness of genomic selection by response to selection for winter wheat variety improvement

description: [No description entered]
description: SNP kNN
 50%Genotyping-by-sequencing
 imputed SNP file with 50% missing data using k-nearest neighbor imputation
 methodPhenotypesWheat DH line ID, year, grain yield, SDS sedimentation volume, kernel weight, wheat protein
DOI: 10.5061/dryad.t9n4n3p
title: An investigation of antihypertensive class, dementia, and cognitive decline

description: Objective High blood pressure is one of the main modifiable risk factors
 for dementia. However, there is conflicting evidence regarding the best
 antihypertensive class for optimising cognition. Our objective was to
 determine whether any particular class of antihypertensive was associated
 with a reduced risk of cognitive decline or dementia using comprehensive
 meta-analysis including reanalysis of original participant data. Methods
 To identify suitable studies MEDLINE, Embase and PsycINFO® and
 pre-existing study consortia were searched from inception to December
 2017. Authors of prospective longitudinal human studies or trials of
 antihypertensives were contacted for data-sharing and collaboration.
 Outcome measures were incident dementia or incident cognitive decline
 (classified using the reliable change index method). Data were separated
 into mid and late-life (&gt;65 years) and each antihypertensive class
 was compared to no treatment and to treatment with other
 antihypertensives. Meta-analysis was used to synthesize data. Results Over
 50,000 participants from 27 studies were included. Among those aged
 &gt;65 years, with the exception of diuretics, we found no
 relationship by class with incident cognitive decline or dementia.
 Diuretic use was suggestive of benefit in some analyses but results were
 not consistent across follow-up time, comparator group and outcome.
 Limited data precluded meaningful analyses in those ≤65 years. Conclusions
 Our findings, drawn from the current evidence base, support clinical
 freedom in the selection of antihypertensive regimens to achieve blood
 pressure goals.
description: An investigation of
 antihypertensive class, dementia and cognitive decline. A meta-analysis.
 Online only AppendicesSupplementary data for
 the manuscript entitled 'An investigation of antihypertensive class,
 dementia and cognitive decline. A meta-analysis.'Online only
 Appendices.pdf