cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13750860
title: SlideCNA example data

description: This repository contains the data necessary to follow the slideCNA vignettes showcasing possible avenues of copy number aberration (CNA) calling in slide-seq data. 

 

Raw data to prepare input to slideCNA starting:

HTAPP-895-SMP-7359_scRNAseq_processed.h5ad: annotated scRNAseq reference data for annotation transfer (input for slide-seq cell type annotation with RCTD and beadsplitting)

HTAPP-895-SMP-7359_slide_seq_processed.h5ad: cleaned slide-seq unannotated raw data (input for slide-seq cell type annotation with RCTD and beadsplitting)

 

Prepared data for direct input to slideCNA:

HTAPP-895-SMP-7359_slide-seq_processed_bs.h5ad: slide-seq beadsplitting results (as direct input for slideCNA)

HTAPP-895-SMP-7359_slide-seq_processed_RCTD.h5ad: slide-seq data with RCTD cell type annotation (as direct input for slideCNA)

gene_pos.Robj: genomic gene positions along the chromosomes (input for slideCNA)

 

CNA profiles to calculate correlations between different method-data combinations:

HTAPP-878-SMP-7149_correlation.tar.gz

HTAPP-880-SMP-7179_correlation.tar.gz

HTAPP-895-SMP-7359_correlation.tar.gz

HTAPP-944-SMP-7479_correlation.tar.gz
DOI: 10.5281/zenodo.14753051
title: SlideCNA example data

description: This repository contains the data necessary to follow the slideCNA vignettes showcasing possible avenues of copy number aberration (CNA) calling in slide-seq data. 

 

Raw data to prepare input to SlideCNA (txt format):

HTAPP-895-SMP-7359_slide-seq_beads.txt: Slide-seq bead metadata (as input for RCTD)

HTAPP-895-SMP-7359_slide-seq_coords.txt: Slide-seq bead spatial coordinates (pos_x, pos_y) (as input for RCTD)

HTAPP-895-SMP-7359_scRNA-seq_counts.txt: matching scRNA-seq counts (as input for RCTD and direct input for SlideCNA on non-spatial data)

HTAPP-895-SMP-7359_scRNA-seq_cell_types.txt: scRNA-seq cell type annotations (as input for RCTD)

HTAPP-895-SMP-7359_scRNA-seq_cells_df.txt: scRNA-seq cell metadata including cell label, annotation for cluster type (“Malignant”, “Non-malignant”) (as direct input for SlideCNA on non-spatial data)

 

Prepared data for direct input to SlideCNA (txt format):

HTAPP-895-SMP-7359_slide-seq_beads_annotated.txt: Slide-seq bead metadata including bead label, annotation for cluster type (“Malignant”, “Non-malignant”), and spatial coordinates of each bead (pos_x, pos_y) (as direct input for SlideCNA)

HTAPP-895-SMP-7359_slide-seq_counts.txt: Slide-seq counts (as direct input for SlideCNA)

HTAPP-895-SMP-7359_slide-seq_bs_beads_df.txt: Slide-seq bead metadata after TACCO bead decomposition with split bead label, annotation for cluster type (“Malignant”, “Non-malignant”), and spatial coordinates of each split bead (pos_x, pos_y) (as direct input for SlideCNA)

HTAPP-895-SMP-7359_slide-seq_bs_counts.txt: Slide-seq counts after TACCO bead decomposition (as direct input for SlideCNA)

gene_pos.txt: genomic gene positions along the chromosomes (as direct for input for slideCNA)

 

Raw data to prepare input to slideCNA starting (h5ad format):

HTAPP-895-SMP-7359_scRNAseq_processed.h5ad: annotated scRNAseq reference data for annotation transfer (input for slide-seq cell type annotation with RCTD and beadsplitting)

HTAPP-895-SMP-7359_slide_seq_processed.h5ad: cleaned slide-seq unannotated raw data (input for slide-seq cell type annotation with RCTD and beadsplitting)

 

Prepared data for direct input to slideCNA (h5ad format):

HTAPP-895-SMP-7359_slide-seq_processed_RCTD.h5ad: slide-seq data with RCTD cell type annotation (as direct input for slideCNA)

HTAPP-895-SMP-7359_slide-seq_processed_bs.h5ad: slide-seq beadsplitting results (as direct input for slideCNA)

gene_pos.Robj: genomic gene positions along the chromosomes (input for slideCNA)

 

CNA profiles to calculate correlations between different method-data combinations:

HTAPP-878-SMP-7149_correlation.tar.gz

HTAPP-880-SMP-7179_correlation.tar.gz

HTAPP-895-SMP-7359_correlation.tar.gz

HTAPP-944-SMP-7479_correlation.tar.gz
DOI: 10.15468/dl.kqghbb
title: Occurrence Download

description: A dataset containing 2706873 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is INSDC Sequences",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2706873 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009812-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.28eudh
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Kaloula verrucosa Boulenger, 1904"
 ]
}

 The dataset includes 271 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009815-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jwae5w
title: Occurrence Download

description: A dataset containing 7887 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bradypus variegatus Schinz, 1825"
 ]
}

 The dataset includes 7887 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009816-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93ecdf
title: Occurrence Download

description: A dataset containing 7887 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bradypus variegatus Schinz, 1825"
 ]
}

 The dataset includes 7887 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009817-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28562531
title: MRdb - Inflammatory cytokines

description: MRdb - Inflammatory cytokines (41)
DOI: 10.6084/m9.figshare.28562531.v1
title: Inflammatory cytokines

description: Inflammatory cytokines
DOI: 10.15468/dl.4s87wf
title: Occurrence Download

description: A dataset containing 8678000 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Emberiza Linnaeus, 1758",
 "Year 1000-2025"
 ]
}

 The dataset includes 8678000 records from 5311 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009810-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.by4hfr
title: Occurrence Download

description: A dataset containing 1349 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Faidherbia albida (Delile) A.Chev.",
 "HasCoordinate is true",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 1349 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072815-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15756611
title: HCF Monsoon Onset Forecast June 19, 2025

description: In the forecast file, the values represent the forecasted probabilities of monsoon onset in each interval after the forecast date. All probabilities rounded to 4 digits after the decimal point. For more details see here.
DOI: 10.5281/zenodo.15756612
title: HCF Monsoon Onset Forecast June 19, 2025

description: In the forecast file, the values represent the forecasted probabilities of monsoon onset in each interval after the forecast date. All probabilities rounded to 4 digits after the decimal point. For more details see here.
DOI: 10.15468/dl.cakmad
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Geokichla princei (Sharpe, 1874)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 61 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072817-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15756596
title: HCF Monsoon Onset Forecast June 26, 2025

description: In the forecast file, the values represent the forecasted probabilities of monsoon onset in each interval after the forecast date. All probabilities rounded to 4 digits after the decimal point. For more details see here.
DOI: 10.5281/zenodo.15756597
title: HCF Monsoon Onset Forecast June 26, 2025

description: In the forecast file, the values represent the forecasted probabilities of monsoon onset in each interval after the forecast date. All probabilities rounded to 4 digits after the decimal point. For more details see here.
DOI: 10.15468/dl.ezer8s
title: Occurrence Download

description: A dataset containing 7472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Geopelia striata (Linnaeus, 1766)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 7472 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072820-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34847/nkl.1ef57s5v
title: AGRINION - Stele funeraria di Athenodoros
title: Agrinion 15B

description: buono
description: numero di inventario
description: Source: Socal, Michela
description: Provenance: 1.0
description: Provenance: Dorsoduro 3484/D Venezia
description: Provenance: Italia
description: Provenance: Università Ca' Foscari
description: Provenance: Venezia
description: Provenance: primo piano
description: created: 1981-1985
DOI: 10.15468/dl.uehke8
title: Occurrence Download

description: A dataset containing 23054 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Geronticus calvus (Boddaert, 1783)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 23054 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072822-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mx9wr5
title: Occurrence Download

description: A dataset containing 9219 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 9219 records from 295 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072825-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mr2fub
title: Occurrence Download

description: A dataset containing 2524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Geronticus eremita (Linnaeus, 1758)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 2524 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072826-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15758991
title: Testes, Resultados e Datasets para a Abordagem de Migração de Dados Não Estruturados para Bancos de Dados Relacionais Usando Modelos de Linguagem de Larga Escala Pré Treinados

description: Testes, Resultados e Datasets para o trabalho de conclusão de cusro: Abordagem de Migração de Dados Não Estruturados para Bancos de Dados Relacionais Usando Modelos de Linguagem de Larga Escala Pré Treinados.
DOI: 10.5281/zenodo.15758992
title: Testes, Resultados e Datasets para a Abordagem de Migração de Dados Não Estruturados para Bancos de Dados Relacionais Usando Modelos de Linguagem de Larga Escala Pré Treinados

description: Testes, Resultados e Datasets para o trabalho de conclusão de cusro: Abordagem de Migração de Dados Não Estruturados para Bancos de Dados Relacionais Usando Modelos de Linguagem de Larga Escala Pré Treinados.
DOI: 10.15468/dl.q64ngg
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Glareola cinerea Fraser, 1843",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 242 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072828-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uc4wq3
title: Occurrence Download

description: A dataset containing 5042 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Glareola nordmanni Fischer von Waldheim, 1842",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 5042 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072831-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e234607v1
title: ECIN Replication Package for "Supply Disruptions, Economic Slack, and the State-Dependent Phillips Curve"

description: This project includes codes and data to replicate "Supply Disruptions, Economic Slack, and the State-Dependent Phillips Curve."<br><br><b>Abstract:</b><br>This paper investigates how supply disruptions and economic slack affect the responsiveness of inflation to changes in aggregate demand. We propose and estimate a nonlinear Phillips curve, whereby the sensitivity of inflation to changes in demand varies with supply conditions and the amount of slack in the economy. We find evidence that supply disruptions and low unemployment both steepen the Phillips curve, thereby amplifying the inflationary effects of increased demand. Our results suggest that the effects of fiscal policy on inflation depend on the prevailing supply conditions and the level of unemployment in the economy.
description: Data reflects aggregate data for the U.S., for U.S. regions, and for U.S. states.
DOI: 10.15468/dl.wugnjc
title: Occurrence Download

description: A dataset containing 523955 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is ZAF.3.1.1_1",
 "OccurrenceStatus is Present",
 "Year 2020-2025"
 ]
}

 The dataset includes 523955 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072818-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pt5ytk
title: Occurrence Download

description: A dataset containing 4454 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Glareola nuchalis G.R.Gray, 1849",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 4454 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072833-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffkb7g
title: Occurrence Download

description: A dataset containing 669260 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aconitum septentrionale Koelle, Thalictrum minus L., Carex globularis L., Deschampsia flexuosa (L.) Trin., Solidago virgaurea L.)",
 "Geometry POLYGON ((-180 45.53015, 180 45.53015, 180 83.62313, -180 83.62313, -180 45.53015))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "CoordinateUncertaintyInMeters is less than or equal to 50000"
 ]
}

 The dataset includes 669260 records from 923 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072824-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15785/sbgrid/1176
title: X-Ray Diffraction data from Flavin-dependent tryptophan 7-halogenase RebH in complex with 6-bromo-Ltryptophan, source of 9H6M structure

description: data with anomalous signal from bromine
description: The XDS.INP file used for processing is given as template. Only the first 3000 of 3600 images were used because of radiation damage.
DOI: 10.15468/dl.x7mbvw
title: Occurrence Download

description: A dataset containing 1430 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Glareola ocularis J.Verreaux, 1833",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 1430 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072835-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrxqqt
title: Occurrence Download

description: A dataset containing 18614 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Glareola pratincola (Linnaeus, 1766)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 18614 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072837-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive5954.20250331.9.3
title: Halorubrum distributum (Zvyagintseva and Tarasov 1989) Oren and Ventosa 1996

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0073996.10fu
title: SH0073996.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive5954.20251217.10
title: Halorubrum distributum (Zvyagintseva and Tarasov 1989) Oren and Ventosa 1996

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5955.20250331.9.3
title: Halorubrum ezzemoulense Kharroub et al. 2006 emend. Corral et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0073997.10fu
title: SH0073997.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive5955.20251217.10
title: Halorubrum ezzemoulense Kharroub et al. 2006 emend. Corral et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive5956.20250331.9.3
title: Halorubrum cibi Roh and Bae 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.