cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11956035.v1
title: Genomic assessment of suitability of pigs for inclusion in the Pied Danish Pig conservation program – A case study

description: Breed assignment was performed for pigs putatively belonging to Pied Danish Pigs, an endangered Danish conservation breed. DNA array data were available for the candidates who had insufficient pedigree information. So were data for a reference population of animals from Danish conservation breeds as well as data from a range of Northern European pig breeds, and wild boar. Breed proportions were estimated using the program ADMIXTURE. Half the candidates were found to have at least 95% of their ancestry from Pied Danish Pigs. Several candidates showed varying degrees of admixture with other breeds, most notably Gloucester Old Spot. The same was observed for several of the Pied Danish Pig reference animals. The analyzes identified suitable breeding candidates and prevented unwanted recent admixture from spreading in the breeding population.
DOI: 10.6084/m9.figshare.11956026
title: A Score-Driven Conditional Correlation Model for Noisy and Asynchronous Data: An Application to High-Frequency Covariance Dynamics

description: The analysis of the intraday dynamics of covariances among high-frequency returns is challenging due to asynchronous trading and market microstructure noise. Both effects lead to significant data reduction and may severely affect the estimation of the covariances if traditional methods for low-frequency data are employed. We propose to model intraday log-prices through a multivariate local-level model with score-driven covariance matrices and to treat asynchronicity as a missing value problem. The main advantages of this approach are: (i) all available data are used when filtering the covariances, (ii) market microstructure noise is taken into account, (iii) estimation is performed by standard maximum likelihood. Our empirical analysis, performed on 1-sec NYSE data, shows that opening hours are dominated by idiosyncratic risk and that a market factor progressively emerges in the second part of the day. The method can be used as a nowcasting tool for high-frequency data, allowing to study the real-time response of covariances to macro-news announcements and to build intraday portfolios with very short optimization horizons.
DOI: 10.6084/m9.figshare.11956026.v2
title: A Score-Driven Conditional Correlation Model for Noisy and Asynchronous Data: an Application to High-Frequency Covariance Dynamics*

description: The analysis of the intraday dynamics of covariances among high-frequency returns is challenging due to asynchronous trading and market microstructure noise. Both effects lead to significant data reduction and may severely affect the estimation of the covariances if traditional methods for low-frequency data are employed. We propose to model intraday log-prices through a multivariate local-level model with score-driven covariance matrices and to treat asynchronicity as a missing value problem. The main advantages of this approach are: (i) all available data are used when filtering the covariances, (ii) market microstructure noise is taken into account, (iii) estimation is performed by standard maximum likelihood. Our empirical analysis, performed on 1-second NYSE data, shows that opening hours are dominated by idiosyncratic risk and that a market factor progressively emerges in the second part of the day. The method can be used as a nowcasting tool for high-frequency data, allowing to study the real-time response of covariances to macro-news announcements and to build intraday portfolios with very short optimization horizons.
DOI: 10.6084/m9.figshare.11956026.v3
title: A Score-Driven Conditional Correlation Model for Noisy and Asynchronous Data: An Application to High-Frequency Covariance Dynamics

description: The analysis of the intraday dynamics of covariances among high-frequency returns is challenging due to asynchronous trading and market microstructure noise. Both effects lead to significant data reduction and may severely affect the estimation of the covariances if traditional methods for low-frequency data are employed. We propose to model intraday log-prices through a multivariate local-level model with score-driven covariance matrices and to treat asynchronicity as a missing value problem. The main advantages of this approach are: (i) all available data are used when filtering the covariances, (ii) market microstructure noise is taken into account, (iii) estimation is performed by standard maximum likelihood. Our empirical analysis, performed on 1-sec NYSE data, shows that opening hours are dominated by idiosyncratic risk and that a market factor progressively emerges in the second part of the day. The method can be used as a nowcasting tool for high-frequency data, allowing to study the real-time response of covariances to macro-news announcements and to build intraday portfolios with very short optimization horizons.
DOI: 10.6084/m9.figshare.11955798
title: Data from: Active escape of prey from predator vent via the digestive tract

description: Sugiura S (2020) Active escape of prey from predator vent via the digestive tract. Current Biology (https://doi.org/10.1016/j.cub.2020.06.026)
DOI: 10.6084/m9.figshare.11955687
title: Springer Nature APCs in the Wild Survey

description: Raw survey data and questions for the APCs in the Wild Survey run by Springer Nature in 2019.
DOI: 10.6084/m9.figshare.11955612
title: Elastic Chains: Data and code

description: Data used in the figures in a paper "Dynamics of a long chain in turbulent flows: Impact of vortices," by <br> J. R. Picardo, R. Singh, <strong>Samriddhi Sankar Ray</strong>, and D. Vincenzi. <br> <strong>Philosophical Transactions of the Royal Society A</strong> (<em>in press);</em> ArXiv: 1912.11431.<br>Please read the ReadMe file for help with the use of this data set.
DOI: 10.6084/m9.figshare.11955621
title: Phylogenetic results in newick files

description: Phylogenetic results using each Dromar and Apis MLE or All Dromar and Apis MLE in newick files by fasttree with bootstrap 1000 times made from clustal omega alignments results.
DOI: 10.6084/m9.figshare.11955591
title: Dataset 4 from Interaction mechanisms quantified from dynamical features of frog choruses

description: Call timing of three frogs obtained from Dataset 4.
DOI: 10.6084/m9.figshare.11955621.v1
title: Phylogenetic results in newick files

description: Phylogenetic results using each Dromar and Apis MLE or All Dromar and Apis MLE in newick files by fasttree with bootstrap 1000 times made from clustal omega alignments results.
DOI: 10.6084/m9.figshare.11955621.v2
title: Phylogenetic results in newick files

description: Phylogenetic results using each Dromar and Apis MLE or All Dromar and Apis MLE in newick files by fasttree with bootstrap 1000 times made from clustal omega alignments results.
DOI: 10.6084/m9.figshare.11955591.v1
title: Dataset 4 from Interaction mechanisms quantified from dynamical features of frog choruses

description: Call timing of three frogs obtained from Dataset 4.
DOI: 10.6084/m9.figshare.11955612.v1
title: Elastic Chains: Data and code

description: Data used in the figures in a paper "Dynamics of a long chain in turbulent flows: Impact of vortices," by <br> J. R. Picardo, R. Singh, <strong>Samriddhi Sankar Ray</strong>, and D. Vincenzi. <br> <strong>Philosophical Transactions of the Royal Society A</strong> (<em>in press);</em> ArXiv: 1912.11431.
DOI: 10.6084/m9.figshare.11955582
title: Dataset 3 from Interaction mechanisms quantified from dynamical features of frog choruses

description: Call timing of three frogs obtained from Dataset 3.
DOI: 10.6084/m9.figshare.11955585
title: Dataset 1 from Interaction mechanisms quantified from dynamical features of frog choruses

description: Call timing of three frogs obtained from Dataset 1.
DOI: 10.6084/m9.figshare.11955582.v1
title: Dataset 3 from Interaction mechanisms quantified from dynamical features of frog choruses

description: Call timing of three frogs obtained from Dataset 3.
DOI: 10.6084/m9.figshare.11955585.v1
title: Dataset 1 from Interaction mechanisms quantified from dynamical features of frog choruses

description: Call timing of three frogs obtained from Dataset 1.
DOI: 10.6084/m9.figshare.11955579
title: Dataset 2 from Interaction mechanisms quantified from dynamical features of frog choruses

description: Call timing of three frogs obtained from Dataset 2.
DOI: 10.6084/m9.figshare.11955579.v1
title: Dataset 2 from Interaction mechanisms quantified from dynamical features of frog choruses

description: Call timing of three frogs obtained from Dataset 2.
DOI: 10.6084/m9.figshare.11955537
title: Microbial imprints on sulfide minerals in submarine hydrothermal deposits of the East Pacific Rise

description: Diverse numbers of iron- and sulfur-oxidizing microbes have been found in submarine hydrothermal deposits. They have played a prominent role in weathering of seafloor sulfide deposits. However, evidence for microbe-mineral interactions in sediments is rare. Mineralogic analysis and SEM-EDX examination of sulfide deposits from the East Pacific Rise demonstrated that (1) sulfide minerals were extensively leached, with characteristic microbial dissolution pits on mineral surfaces; (2) the possible <i>Acidithiobacillus</i>-like bacteria and possible metabolites were found closely associated with the dissolution pits <i>in situ</i>. The results provide direct evidence for microbial leaching on the solid mineral crystals, most likely by the contact mechanisms, in the seafloor sulfide deposits. The uploaded datasets include the data for Figure 2-5 in the paper.
DOI: 10.25592/uhhfdm.1462
title: ZISA_BR_ZI

description: Sub-corpus of the ZISA project with one Italian and one Portuguese learner. The ZISA project contains audio recordings of five adult learners of German as an L2 with L1s Spanish, Italian and Portuguese. Recording sessions (interview/conversation) in German once or twice a month over approx. two years starting 3-14 weeks after their arrival in Germany. Only transcripts and metadata are available. Orthographic transcription according to project internal conventions.
DOI: 10.6084/m9.figshare.11955537.v1
title: Microbial imprints on sulfide minerals in submarine hydrothermal deposits of the East Pacific Rise

description: Diverse of iron- and sulfur-oxidizing microbes have been found in submarine hydrothermal deposits. They have played a prominent role in weathering of seafloor sulfide deposits. However, evidence for microbe-mineral interactions in sediments is rare. Mineralogic analysis and SEM examination of sulfide deposits from the East Pacific Rise demonstrated that (1) sulfide minerals were extensively leached, with characteristic microbial dissolution pits on mineral surfaces; (2) the <i>Acidithiobacillus</i>-like bacteria and possible metabolites were found closely associated with the dissolution pits <i>in situ</i>. The results provide direct evidence for microbial leaching on the solid mineral crystals, most likely by the contact mechanisms, in the seafloor sulfide deposits; and hopefully, the typical microbial imprints on sulfide minerals provide new clues to the search for extraterrestrial life. The uploaded datasets include the data for Figure 2, Figure4 and Figure 5 in the paper.
DOI: 10.25592/uhhfdm.1461
title: ZISA_BR_ZI

description: Sub-corpus of the ZISA project with one Italian and one Portuguese learner. The ZISA project contains audio recordings of five adult learners of German as an L2 with L1s Spanish, Italian and Portuguese. Recording sessions (interview/conversation) in German once or twice a month over approx. two years starting 3-14 weeks after their arrival in Germany. Only transcripts and metadata are available. Orthographic transcription according to project internal conventions.
DOI: 10.6084/m9.figshare.11955444
title: glmnet model

description: This is the ranking model used in "a Bayesian retrosynthesis algorithm".
DOI: 10.6084/m9.figshare.11955498.v3
title: Dataset and code for paper "Where is my child? Spatiotemporal distribution of child trafficking in China and predicting the locations of missing children"

description: The file (baby_find_home_data.txt) is data obtained from a Chinese public welfare website (https://baobeihuijia.com/) looking for missing children.<br>The file (code_v2.zip) is a code file implemented by an under review paper ("Where is my child? Spatiotemporal distribution of child trafficking in China and predicting the locations of missing children").<br>This project uses two C ++ open source libraries (Alglib and CJsonObject). This project complies with the GPL license.<br>Alglib (https://www.alglib.net/) is an open source numerical analysis and data processing library for personal and academic use, developed for the ALGLIB Project Company. Detailed implementation of random forest algorithm used in this project. This library complies with the GPL license.<br>CJsonObject (https://github.com/Bwar/CJsonObject) is a C ++ version of the JSON open source library developed by Bwar based on CJSON. Used in this project for data reading and formatting output. This library complies with the MIT license.
DOI: 10.6084/m9.figshare.11955405
title: Revision qPCR_to determine Wolbachia DNA density and viral RNA from the same fly

description: Column headers correspond to the host (Species), Wolbachia infection status (Wolbachia status), Virus infection status (FHV or DCV), Ct values for FHV, DCV, Wolbachia and the control fly gene Actin5C (2 technical replicates for each).
DOI: 10.6084/m9.figshare.11955444.v1
title: glmnet

description: This is the ranking model used in "a Bayesian retrosynthesis algorithm".
DOI: 10.6084/m9.figshare.11955444.v2
title: glmnet model

description: This is the ranking model used in "a Bayesian retrosynthesis algorithm".
DOI: 10.6084/m9.figshare.11955318
title: Dataset

description: The alignments, best substitution model, phylogeny, r8s result, MAPS results of the MS "<b>The genome of a cave plant, <i>Primulina huaijiensis</i>, provides insights into adaptation to limestone karst habitats</b>".
DOI: 10.6084/m9.figshare.11955270
title: Assembled unigenes for Curcuma kwangsiensis

description: RNA sequencing and Assembled unigenes for <i>Curcuma kwangsiensis</i>
DOI: 10.6084/m9.figshare.11955270.v1
title: Assembled unigens for Curcuma kwangsiensis

description: <i>C. kwangsiensis</i> RNA was used to construct cDNA libraries with fragment a length of 200 bp. Then, paired-end sequencing was performed using an Illumina HiSeq<sup>TM</sup> 2500 following the manufacturer’s instructions (Illumina, San Diego, CA). The quality of the raw reads was assessed using SeqQC-V2.2 software, and high-quality reads (Q &lt; 20) were assembled using the Trinity software with default parameters. Only these high-quality, filtered reads were utilized for further analysis. The assembled sequences were compared against the nonredundant protein database (nr) using BLASTX with a threshold E-value of 10<sup>-6</sup>.
DOI: 10.6084/m9.figshare.11955270.v4
title: Assembled unigenes for Curcuma kwangsiensis

description: RNA sequencing and Assembled unigenes for <i>Curcuma kwangsiensis</i>
DOI: 10.6084/m9.figshare.11955270.v3
title: Assembled unigenes for Curcuma kwangsiensis

description: RNA sequencing and functional analysis for <i>Curcuma kwangsiensis</i>
DOI: 10.6084/m9.figshare.11955183
title: GO terms (Molecular Function) similarity

description: Pairwise GO term sets (Molecular Function) similarities induced by drug-pairs and their PPI partners (degree =2) among all small-molecule drugs modeled by semantic similarity.
DOI: 10.6084/m9.figshare.11955183.v2
title: GO terms (Molecular Function) similarity

description: Pairwise GO term sets (Molecular Function) similarities induced by drug-pairs and their PPI partners (degree =2) among all small-molecule drugs modeled by semantic similarity.
DOI: 10.6084/m9.figshare.11955180
title: GO term (Cellular Component) similarity

description: Pairwise GO term sets (Cellular Component) similarities induced by drug-pairs and their PPI partners (degree =2) among all small-molecule drugs modeled by semantic similarity.
DOI: 10.6084/m9.figshare.11955183.v1
title: GO terms (Molecular Function) similarity

description: Pairwise GO term sets (Molecular Function) similarities induced by drug-pairs and their PPI partners (degree =2) among all small-molecule drugs modeled by semantic similarity.
DOI: 10.6084/m9.figshare.11955177
title: GO term (Biological Process) similarity

description: Pairwise GO term sets (Biological Process) similarities induced by drug-pairs and their PPI partners (degree =2) among all small-molecule drugs modeled by semantic similarity.
DOI: 10.6084/m9.figshare.11955177.v2
title: GO term (Biological Process) similarity

description: Pairwise GO term sets (Biological Process) similarities induced by drug-pairs and their PPI partners (degree =2) among all small-molecule drugs modeled by semantic similarity.
DOI: 10.6084/m9.figshare.11955180.v2
title: GO term (Cellular Component) similarity

description: Pairwise GO term sets (Cellular Component) similarities induced by drug-pairs and their PPI partners (degree =2) among all small-molecule drugs modeled by semantic similarity.
DOI: 10.26180/5e6579b674428
title: Towards the Summer Night: A Mentoring Project for Australian Composers Identifying as Women

description: The Summers Night Project is an ongoing composer-mentoring programme established in 2018 by musicians Cat Hope and Gabriella Smart, with the support of the Perth-based new music organisation Tura New Music. The project aims to support and mentor emerging Australian female and gender minority composers to create new compositions for performance, with the aim of growing the gender diversity of composers in music programmes across Australia. Three composers were chosen from a national call for submissions, and works were performed by an ensemble consisting of members from the Decibel and Soundstream new music ensembles. Three new works were workshopped, recorded then performed on a short tour of Perth, Adelaide and Melbourne, Australia in July 2018. The project takes its name and inspiration from Australian feminist Anne Summers, author of the ground-breaking examination of women in Australia's history Damned Whores and God's Police (1975) and was inspired by her 2017 Women's Manifesto. This article examines the rationale for such a project, the processes and results of the project itself, and plans for its futur
DOI: 10.6084/m9.figshare.11955177.v1
title: GO term (Biological Process) similarity

description: Pairwise GO term sets (Biological Process) similarities induced by drug-pairs and their PPI partners (degree =2) among all small-molecule drugs modeled by semantic similarity.
DOI: 10.6084/m9.figshare.11955120
title: Urinary incontinence and CO2 Laser

description: Symptoms of Urinary Stress Incontinence were evaluated before, and 1 month after the last session (3 sessions with a 30-day interval between them) in 50 post-menopausal women (Middle Age - Menopause, Interquartile Range Parity - BMI).
DOI: 10.6084/m9.figshare.11955087
title: O-PUP-CPZ-W11-F-CO-ASSEMBLY

description: This data pack is suitable for anvi'o v6.1 or later. This particular dataset contains one set of co-assemblies of comparable samples that were used in Miyoshi and Miyoshi et al. (2020) study to subsequently generate a final set of non-redundant MAGs.
DOI: 10.6084/m9.figshare.11955090
title: O-PUP-CPZ-W11-M-CO-ASSEMBLY

description: This data pack is suitable for anvi'o v6.1 or later. This particular dataset contains one set of co-assemblies of comparable samples that were used in Miyoshi and Miyoshi et al. (2020) study to subsequently generate a final set of non-redundant MAGs.
DOI: 10.6084/m9.figshare.11955108
title: Source Data file for "Genome-wide Analysis Reveals Important Contribution of Immune System Pathways to the Genetic Architecture of Asthma"

description: This is the Source Data file for the manuscript entitled "Genome-wide Analysis Reveals Important Contribution of Immune System Pathways to the Genetic Architecture of Asthma" by Yi Han et al.
DOI: 10.6084/m9.figshare.11955084
title: O-PUP-CPZ-W07-CO-ASSEMBLY

description: This data pack is suitable for anvi'o v6.1 or later. This particular dataset contains one set of co-assemblies of comparable samples that were used in Miyoshi and Miyoshi et al. (2020) study to subsequently generate a final set of non-redundant MAGs.
DOI: 10.6084/m9.figshare.11955090.v1
title: O-PUP-CPZ-W11-M-CO-ASSEMBLY

description: This data pack is suitable for anvi'o v6.1 or later. This particular dataset contains one set of co-assemblies of comparable samples that were used in Miyoshi and Miyoshi et al. (2020) study to subsequently generate a final set of non-redundant MAGs.
DOI: 10.6084/m9.figshare.11955084.v1
title: O-PUP-CPZ-W07-CO-ASSEMBLY

description: This data pack is suitable for anvi'o v6.1 or later. This particular dataset contains one set of co-assemblies of comparable samples that were used in Miyoshi and Miyoshi et al. (2020) study to subsequently generate a final set of non-redundant MAGs.
DOI: 10.6084/m9.figshare.11955081
title: O-PUP-CPZ-W03-CO-ASSEMBLY

description: This data pack is suitable for anvi'o v6.1 or later. This particular dataset contains one set of co-assemblies of comparable samples that were used in Miyoshi and Miyoshi et al. (2020) study to subsequently generate a final set of non-redundant MAGs.
DOI: 10.6084/m9.figshare.11955075
title: O-PUP-CON-W07-CO-ASSEMBLY

description: This data pack is suitable for anvi'o v6.1 or later. This particular dataset contains one set of co-assemblies of comparable samples that were used in Miyoshi and Miyoshi et al. (2020) study to subsequently generate a final set of non-redundant MAGs.
DOI: 10.6084/m9.figshare.11955075.v1
title: O-PUP-CON-W07-CO-ASSEMBLY

description: This data pack is suitable for anvi'o v6.1 or later. This particular dataset contains one set of co-assemblies of comparable samples that were used in Miyoshi and Miyoshi et al. (2020) study to subsequently generate a final set of non-redundant MAGs.
DOI: 10.6084/m9.figshare.11955078
title: O-PUP-CON-W11-CO-ASSEMBLY

description: This data pack is suitable for anvi'o v6.1 or later. This particular dataset contains one set of co-assemblies of comparable samples that were used in Miyoshi and Miyoshi et al. (2020) study to subsequently generate a final set of non-redundant MAGs.
DOI: 10.6084/m9.figshare.11955078.v1
title: O-PUP-CON-W11-CO-ASSEMBLY

description: This data pack is suitable for anvi'o v6.1 or later. This particular dataset contains one set of co-assemblies of comparable samples that were used in Miyoshi and Miyoshi et al. (2020) study to subsequently generate a final set of non-redundant MAGs.
DOI: 10.6084/m9.figshare.11955066
title: O-DAM-CON-W03-CO-ASSEMBLY

description: This data pack is suitable for anvi'o v6.1 or later. This particular dataset contains one set of co-assemblies of comparable samples that were used in Miyoshi and Miyoshi et al. (2020) study to subsequently generate a final set of non-redundant MAGs.
DOI: 10.6084/m9.figshare.11955069
title: O-DAM-CPZ-W03-CO-ASSEMBLY

description: This data pack is suitable for anvi'o v6.1 or later. This particular dataset contains one set of co-assemblies of comparable samples that were used in Miyoshi and Miyoshi et al. (2020) study to subsequently generate a final set of non-redundant MAGs.
DOI: 10.6084/m9.figshare.11955072
title: O-PUP-CON-W03-CO-ASSEMBLY

description: This data pack is suitable for anvi'o v6.1 or later. This particular dataset contains one set of co-assemblies of comparable samples that were used in Miyoshi and Miyoshi et al. (2020) study to subsequently generate a final set of non-redundant MAGs.
DOI: 10.6084/m9.figshare.11955066.v1
title: O-DAM-CON-W03-CO-ASSEMBLY

description: This data pack is suitable for anvi'o v6.1 or later. This particular dataset contains one set of co-assemblies of comparable samples that were used in Miyoshi and Miyoshi et al. (2020) study to subsequently generate a final set of non-redundant MAGs.