cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/hb36p-z9p51
title: HUVECs infx pNLBg1I_endptvirus

description: Raw data files of HUVECs infx pNLBg1I_endptvirus
description: <strong>Tilt Series Date:</strong> 2013-11-04</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 170.0 eV/Å²,  defocus: -6.0 μm,  magnification: 19500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> pNLGFPBg1I obtained from Irvin Chen (UCLA)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Whole cells were grown on Au finder grids and infected with pNLGFPBg1I. Sample was frozen after endpoint of virus infection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-11-04-47/rawdata/</p>13nov04_Endptvirus_montage_21x21tgt_0018.mrc,  Tilt Series (Pixel Size 0.56 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-11-04-47/rawdata/13nov04_Endptvirus_montage_21x21tgt_0018.mrc"
        > <i class="download icon"></i> Download </a></p>

        13nov04_Endptvirus_montage_21x21tgt_0018_full.rec,  Reconstruction (Pixel Size 2.24 nm), 430.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-11-04-47/3dimage_33919/13nov04_Endptvirus_montage_21x21tgt_0018_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/rrd86-p4x72
title: Pseudoalteromonas Iuteoviolacea MP121

description: P Iuteo DvipABhcpI Dbact2 BP-sfGFP
description: <strong>Tilt Series Date:</strong> 2013-06-22</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Pseudoalteromonas luteoviolacea</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: 10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> purified and processed by Gregor, Collaboration with Newman lab</p>
<strong>Purification / Growth Conditions / Treatment:</strong> on plate</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, Yi-Wei1</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2013-06-22-14/rawdata/</p>2013_06_22_mp121_0019.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2013-06-22-14/rawdata/2013_06_22_mp121_0019.mrc"
        > <i class="download icon"></i> Download </a></p>

        2013_06_22_mp121_0019_2k_sec_full.rec,  Reconstruction (Pixel Size 1.97 nm), 801.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2013-06-22-14/3dimage_28824/2013_06_22_mp121_0019_2k_sec_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/y6h43-e0m07
title: Agrobacterium tumefaciens C58

description: Agro C58
description: <strong>Tilt Series Date:</strong> 2013-10-23</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Induction for T-pilus with 200uM AS</p>
<strong>Sample Preparation:</strong> Manual blotting</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-23-8/rawdata/</p>c58_berk_home_195k0008.mrc,  Tilt Series (Pixel Size 0.56 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-23-8/rawdata/c58_berk_home_195k0008.mrc"
        > <i class="download icon"></i> Download </a></p>

        c58_berk_home_195k0008.rec,  Reconstruction (Pixel Size 0.0 nm), 1.6 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-23-8/3dimage_49051/c58_berk_home_195k0008.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/grdbe-qyg89
title: Alongum

description: Alongum_periplasmiclayers
description: <strong>Tilt Series Date:</strong> 2012-05-20</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-30.0°, 30.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> WesleyChen helped remove layers</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-35/rawdata/</p>alongLys_20015.mrc,  Tilt Series (Pixel Size 0.95 nm), 512.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-35/rawdata/alongLys_20015.mrc"
        > <i class="download icon"></i> Download </a></p>

        alongLys_20015_full.rec,  Reconstruction (Pixel Size 1.95 nm), 309.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-35/3dimage_56790/alongLys_20015_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/cejxp-tm346
title: Agro VirB8-GFP

description: Raw data files of Agro VirB8-GFP
description: <strong>Tilt Series Date:</strong> 2013-10-03</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells were grown in liquid at 19C and induced with 200uM AS for 24 hours</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-03-11/rawdata/</p>virb8_24h_2750012.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-03-11/rawdata/virb8_24h_2750012.mrc"
        > <i class="download icon"></i> Download </a></p>

        virb8_24h_2750012_part121_2.rec,  Reconstruction (Pixel Size 1.56 nm), 801.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-03-11/3dimage_31835/virb8_24h_2750012_part121_2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/gsx77-vjj84
title: Bdellovibrio attack-phase

description: Raw data files of Bdellovibrio attack-phase
description: <strong>Tilt Series Date:</strong> 2012-11-14</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Bdellovibrio bacteriovorus</p>
<strong>Strain:</strong> HD100</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFTomo</p>
<strong>Collaborators and Roles:</strong> Strain from Liz Sockett</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown in S17-1 prey solution at 30 degrees. OD600=0.2</p>
<strong>Sample Preparation:</strong> Vitrobot settings: 100% humidity, 3µl sample, 10 nm BSA treated gold. -3 offset, 4 sec blot time, no drain. Ethane/propane mix.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2012-11-14-63/rawdata/</p>Bdellovibrio_wt_20121114_0030022.mrc,  Tilt Series (Pixel Size 0.33 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2012-11-14-63/rawdata/Bdellovibrio_wt_20121114_0030022.mrc"
        > <i class="download icon"></i> Download </a></p>

        Bdellovibrio_wt_20121114_0030022_full.rec,  Reconstruction (Pixel Size 1.32 nm), 441.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2012-11-14-63/3dimage_23594/Bdellovibrio_wt_20121114_0030022_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.7yuxmb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Atoconeura kenya, Atoconeura, Atoconeura eudoxia, Atoconeura aethiopica, Atoconeura luxata, Atoconeura biordinata, Allocnemis cyanura, Allocnemis, Trithemis, Elattoneura villiersi, Elattoneura, Thermochoria equivocata, Thermochoria, Thermochoria jeanneli, Ischnura elegans, Ischnura, Selysiothemis nigra, Selysiothemis, Hemistigma affine, Hemistigma, Aciagrion, Sympetrum fonscolombii, Sympetrum, Micromacromia camerunica, Micromacromia, Micromacromia zygoptera, Aethiothemis erythromelas, Aethiothemis, Aciagrion gracile, Aciagrion dondoense, Trithetrum navasi, Trithetrum, Trithetrum congoense, Aciagrion africanum, Trithemis tropicana, Hadrothemis vrijdaghi, Hadrothemis, Hadrothemis scabrifrons, Hadrothemis defecta, Hadrothemis camarensis, Hadrothemis versuta, Hadrothemis infesta, Hadrothemis coacta, Hemicordulia, Diastatomma multilineatum, Diastatomma, Mastigogomphus chapini, Mastigogomphus, Crenigomphus kavangoensis, Crenigomphus, Pseudagrion merina, Pseudagrion, Allocnemis marshalli, Hemicordulia asiatica, Microgomphus, Cordulegaster boltonii algirica, Cordulegaster boltonii, Cordulegaster, Hemicordulia similis, Allocnemis elongata, Orthetrum malgassicum, Orthetrum, Lestinogomphus silkeae, Lestinogomphus, Hemicordulia virens, Microgomphus nyassicus, Paragomphus serrulatus, Paragomphus, Aeshna isoceles, Aeshna, Neurocordulia, Mortonagrion stygium, Mortonagrion, Pyrrhosoma nymphula, Pyrrhosoma, Proplatycnemis pseudalatipes, Proplatycnemis, Neophya rutherfordi, Neophya, Allocnemis superba, Elattoneura vittata, Onychogomphus nigrotibialis, Onychogomphus, Cordulia, Cordulia aenea, Stenocypha molindica, Stenocypha, Platycypha picta, Platycypha, Syncordulia venator, Syncordulia, Syncordulia gracilis, Crocothemis, Metacnemis valida, Metacnemis, Crocothemis sanguinolenta, Crocothemis erythraea, Platycypha rufitibia, Crocothemis saxicolor, Crocothemis striata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((40.3629 -22.8988,40.7455 -22.7347,40.8996 -22.3696,40.751 -22.0066,40.3849 -21.8351,39.9523 -22.0203,39.831 -22.3517,39.978 -22.7301,40.3629 -22.8988))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045891-250811113504898/datasets/export for details.
DOI: 10.22002/sk8r8-ajt29
title: gold labeled CheA- in vitro

description: post wash sample - gold labeled CheA, 1.8 nm gold, post ternary formation snap rxn.
description: <strong>Tilt Series Date:</strong> 2013-03-22</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 41000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Heather Hodge and Laura Kiessling</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Buffer: 1x Snap + 1mM DTT 50 mM Tris Hcl pH 7.5, 100 mM Ncl, 0.1% Tween-200)</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-03-22-72/rawdata/</p>HTH1B_10026.mrc,  Tilt Series (Pixel Size 0.2989 nm), 1.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-03-22-72/rawdata/HTH1B_10026.mrc"
        > <i class="download icon"></i> Download </a></p>

        HTH1B_10026_part67_3.rec,  Reconstruction (Pixel Size 0.5978 nm), 2.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-03-22-72/3dimage_26515/HTH1B_10026_part67_3.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/93vsa-x4r46
title: COS7 tfx CHMP4A and VPS4B(E235Q)

description: Whole cell ECT of COS7 cell expressing CHMP4A and VPS4B(E235Q)
description: <strong>Tilt Series Date:</strong> 2012-03-13</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1.5°, constant angular increment, dosage: 60.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> CHMP4A and VPS4B (E235Q) expression constructs provided by W.Sundquist (Utah)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> lipofectamine transfection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-13-8/rawdata/</p>12mar13_c121_1_Cos74ADN_AT1bt1_0001.mrc,  Tilt Series (Pixel Size 0.9 nm), 561.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        12mar13_c121_1_Cos74ADN_AT1bt1_0001_full.rec,  Reconstruction (Pixel Size 1.8 nm), 722.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/8rc8y-pg836
title: HIV capsid purified trim5 alpha

description: 41000 6df, with slit 91/A2
description: <strong>Tilt Series Date:</strong> 2013-12-13</p>
<strong>Data Taken By:</strong> Stephen Carter</p>
<strong>Species / Specimen:</strong> HIV cores</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 91.0 eV/Å²,  defocus: -6.0 μm,  magnification: 41000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> 3dmod and SIRT reconstruction</p>
<strong>Collaborators and Roles:</strong> Wes Sundquist</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Purified recombinant trim5 alpha decorated with decorated HIV cores</p>
<strong>Sample Preparation:</strong> B grid</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2013-12-13-43/rawdata/</p>Trim5alpha41000df60023.mrc,  Tilt Series (Pixel Size 0.26 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2013-12-13-43/rawdata/Trim5alpha41000df60023.mrc"
        > <i class="download icon"></i> Download </a></p>

        Trim5alpha41000df60023_part121_2.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2013-12-13-43/3dimage_36099/Trim5alpha41000df60023_part121_2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.yhq6w9
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Boulengerochromis microlepis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 44 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045894-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/qxq80-t4n14
title: HUVECs infx pNLBg1I_endptvirus

description: Raw data files of HUVECs infx pNLBg1I_endptvirus
description: <strong>Tilt Series Date:</strong> 2013-11-04</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 170.0 eV/Å²,  defocus: -6.0 μm,  magnification: 19500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> pNLGFPBg1I obtained from Irvin Chen (UCLA)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Whole cells were grown on Au finder grids and infected with pNLGFPBg1I. Sample was frozen after endpoint of virus infection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-11-04-10/rawdata/</p>13nov04_Endptvirus_montage_21x21tgt_0004.mrc,  Tilt Series (Pixel Size 0.56 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-11-04-10/rawdata/13nov04_Endptvirus_montage_21x21tgt_0004.mrc"
        > <i class="download icon"></i> Download </a></p>

        13nov04_Endptvirus_montage_21x21tgt_0004_full.rec,  Reconstruction (Pixel Size 2.24 nm), 430.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-11-04-10/3dimage_33796/13nov04_Endptvirus_montage_21x21tgt_0004_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/c6esc-rqk43
title: MJ sacculi

description: Skinny B. subtilis MJ007 sacculi of sporulating cells
description: <strong>Tilt Series Date:</strong> 2012-03-01</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> MJ007, ponA null</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Kit Pogliano</p>
<strong>Purification / Growth Conditions / Treatment:</strong> see Mol Micro Tocheva et al reference</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-03-01-4/rawdata/</p>mjsac0004.mrc,  Tilt Series (Pixel Size 1.9 nm), 1.1 GB  
        
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        mjsac0004_part128_2.rec,  Reconstruction (Pixel Size 3.8 nm), 619.4 MB  
        
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DOI: 10.22002/w5hj9-ayr02
title: Agrobacterium tumefaciens

description: C58 wild type
description: <strong>Tilt Series Date:</strong> 2013-07-28</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Polara</p>
<strong>Collaborators and Roles:</strong> Pat Zabryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> C58 wild type</p>
<strong>Sample Preparation:</strong> 200uM AS, grown on agar + liquid for 2 days</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-28-11/3dimage_29410/</p>c58_au20011_part121_41.rec,  Reconstruction (Pixel Size 1.92 nm), 712.7 MB  
        
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        c58_au20011.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
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