cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3559410.v1
title: Appendix F. Details of the ANCOVA model testing the effects of gull density and month on dispersal rate.

description: Details of the ANCOVA model testing the effects of gull density and month on dispersal rate.
DOI: 10.6084/m9.figshare.3559407
title: Appendix G. Figures presenting gull densities and visitations observed in the field.

description: Figures presenting gull densities and visitations observed in the field.
DOI: 10.6084/m9.figshare.3559407.v1
title: Appendix G. Figures presenting gull densities and visitations observed in the field.

description: Figures presenting gull densities and visitations observed in the field.
DOI: 10.6084/m9.figshare.3559404
title: Appendix H. The relationships between α- , β- , and γ-diversity and gull density.

description: The relationships between α- , β- , and γ-diversity and gull density.
DOI: 10.6084/m9.figshare.3559404.v1
title: Appendix H. The relationships between α- , β- , and γ-diversity and gull density.

description: The relationships between α- , β- , and γ-diversity and gull density.
DOI: 10.6084/m9.figshare.3559401
title: Appendix I. Relationships between dispersal rate and diversity for taxa that can only disperse passively and for taxa that can actively disperse.

description: Relationships between dispersal rate and diversity for taxa that can only disperse passively and for taxa that can actively disperse.
DOI: 10.6084/m9.figshare.3559401.v1
title: Appendix I. Relationships between dispersal rate and diversity for taxa that can only disperse passively and for taxa that can actively disperse.

description: Relationships between dispersal rate and diversity for taxa that can only disperse passively and for taxa that can actively disperse.
DOI: 10.6084/m9.figshare.3559398
title: Appendix A. Location of the 19 landmarks digitized for geometric morphometric analyses and detailed explanation of their position.

description: Location of the 19 landmarks digitized for geometric morphometric analyses and detailed explanation of their position.
DOI: 10.6084/m9.figshare.3559398.v1
title: Appendix A. Location of the 19 landmarks digitized for geometric morphometric analyses and detailed explanation of their position.

description: Location of the 19 landmarks digitized for geometric morphometric analyses and detailed explanation of their position.
DOI: 10.6084/m9.figshare.3559395
title: Appendix A. Fatty acid concentrations of the consumer taxa collected in the five boreal lakes.

description: Fatty acid concentrations of the consumer taxa collected in the five boreal lakes.
DOI: 10.6084/m9.figshare.3559392
title: Appendix A. Organic carbon inputs, material, and methods.

description: Organic carbon inputs, material, and methods.
DOI: 10.6084/m9.figshare.3559392.v1
title: Appendix A. Organic carbon inputs, material, and methods.

description: Organic carbon inputs, material, and methods.
DOI: 10.6084/m9.figshare.3559389
title: Appendix B. Zooplankton and macroinvertebrate species list, combined for Schulzensee and Gollinsee.

description: Zooplankton and macroinvertebrate species list, combined for Schulzensee and Gollinsee.
DOI: 10.6084/m9.figshare.3559389.v1
title: Appendix B. Zooplankton and macroinvertebrate species list, combined for Schulzensee and Gollinsee.

description: Zooplankton and macroinvertebrate species list, combined for Schulzensee and Gollinsee.
DOI: 10.6084/m9.figshare.3559386
title: Appendix C. Details of statistical analyses to compare carbon and nitrogen isotope signatures between lakes, treatments, and seasons.

description: Details of statistical analyses to compare carbon and nitrogen isotope signatures between lakes, treatments, and seasons.
DOI: 10.6084/m9.figshare.3559386.v1
title: Appendix C. Details of statistical analyses to compare carbon and nitrogen isotope signatures between lakes, treatments, and seasons.

description: Details of statistical analyses to compare carbon and nitrogen isotope signatures between lakes, treatments, and seasons.
DOI: 10.6084/m9.figshare.3559383
title: Appendix A. Compounds added to lake water to construct growth medium.

description: Compounds added to lake water to construct growth medium.
DOI: 10.6084/m9.figshare.3559383.v1
title: Appendix A. Compounds added to lake water to construct growth medium.

description: Compounds added to lake water to construct growth medium.
DOI: 10.6084/m9.figshare.3559380
title: Appendix B. Relative contribution of phytoplankton functional groups to total chlorophyll a biomass.

description: Relative contribution of phytoplankton functional groups to total chlorophyll a biomass.
DOI: 10.6084/m9.figshare.3559380.v1
title: Appendix B. Relative contribution of phytoplankton functional groups to total chlorophyll a biomass.

description: Relative contribution of phytoplankton functional groups to total chlorophyll a biomass.
DOI: 10.6084/m9.figshare.3559377
title: Appendix A. Statistical results and daily temperature data from the field site.

description: Statistical results and daily temperature data from the field site.
DOI: 10.6084/m9.figshare.3559377.v1
title: Appendix A. Statistical results and daily temperature data from the field site.

description: Statistical results and daily temperature data from the field site.
DOI: 10.6084/m9.figshare.3559374
title: Appendix A. Leaf ties and the invasive Asiatic oak weevil: photo documentation. (Fig. A1, adult weevil, weevil emergence trap, and weevil damage) and figures showing seasonal emergence and mass of adults, density of leaf ties by tree species, and correlation of leaf-tie abundance and weevil abundance by tree species.

description: Leaf ties and the invasive Asiatic oak weevil: photo documentation. (Fig. A1, adult weevil, weevil emergence trap, and weevil damage) and figures showing seasonal emergence and mass of adults, density of leaf ties by tree species, and correlation of leaf-tie abundance and weevil abundance by tree species.
DOI: 10.6084/m9.figshare.3559374.v1
title: Appendix A. Leaf ties and the invasive Asiatic oak weevil: photo documentation. (Fig. A1, adult weevil, weevil emergence trap, and weevil damage) and figures showing seasonal emergence and mass of adults, density of leaf ties by tree species, and correlation of leaf-tie abundance and weevil abundance by tree species.

description: Leaf ties and the invasive Asiatic oak weevil: photo documentation. (Fig. A1, adult weevil, weevil emergence trap, and weevil damage) and figures showing seasonal emergence and mass of adults, density of leaf ties by tree species, and correlation of leaf-tie abundance and weevil abundance by tree species.
DOI: 10.6084/m9.figshare.3559371
title: Appendix A. Chlorophyll contents in pendulous lichens, including chlorophyll methods.

description: Chlorophyll contents in pendulous lichens, including chlorophyll methods.
DOI: 10.6084/m9.figshare.3559371.v1
title: Appendix A. Chlorophyll contents in pendulous lichens, including chlorophyll methods.

description: Chlorophyll contents in pendulous lichens, including chlorophyll methods.
DOI: 10.6084/m9.figshare.3559368
title: Appendix B. Recovery of maximal quantum yield, Fv/Fm, percentage of initial values, after desiccation treatments.

description: Recovery of maximal quantum yield, Fv/Fm, percentage of initial values, after desiccation treatments.
DOI: 10.6084/m9.figshare.3559368.v1
title: Appendix B. Recovery of maximal quantum yield, Fv/Fm, percentage of initial values, after desiccation treatments.

description: Recovery of maximal quantum yield, Fv/Fm, percentage of initial values, after desiccation treatments.
DOI: 10.6084/m9.figshare.3559365
title: Appendix C. Chlorophyll fluorescence parameters (Fv/Fm, F0, and Fm) for all species and treatments.

description: Chlorophyll fluorescence parameters (Fv/Fm, F0, and Fm) for all species and treatments.
DOI: 10.6084/m9.figshare.3559365.v1
title: Appendix C. Chlorophyll fluorescence parameters (Fv/Fm, F0, and Fm) for all species and treatments.

description: Chlorophyll fluorescence parameters (Fv/Fm, F0, and Fm) for all species and treatments.
DOI: 10.6084/m9.figshare.3559362
title: Appendix A. Tables showing output from general linear models.

description: Tables showing output from general linear models.
DOI: 10.6084/m9.figshare.3559362.v1
title: Appendix A. Tables showing output from general linear models.

description: Tables showing output from general linear models.
DOI: 10.6084/m9.figshare.3559359
title: Appendix A. Description of experimental effects and potential artifacts and base statistical tables structured equation modeling.

description: Description of experimental effects and potential artifacts and base statistical tables structured equation modeling.
DOI: 10.6084/m9.figshare.3559359.v1
title: Appendix A. Description of experimental effects and potential artifacts and base statistical tables structured equation modeling.

description: Description of experimental effects and potential artifacts and base statistical tables structured equation modeling.
DOI: 10.6084/m9.figshare.3559356
title: Appendix A. Identification of the best grain size (resolution) for assessing matrix resistance.

description: Identification of the best grain size (resolution) for assessing matrix resistance.
DOI: 10.6084/m9.figshare.3559356.v1
title: Appendix A. Identification of the best grain size (resolution) for assessing matrix resistance.

description: Identification of the best grain size (resolution) for assessing matrix resistance.
DOI: 10.6084/m9.figshare.3559353
title: Data Paper. Data Paper

description: File List fielddata.csv (MD5: 2f2331b6bc827cf6a99dda99e3699b22) genotypedata.csv (MD5: 448e3586babd9a48ea52357e214d9df5) Description This data set includes genotypes for 5000 chinook salmon individuals collected from throughout California's Central Valley between 1998–2013. We genotyped these samples using a panel of 96 single nucleotide polymorphism (SNP) markers. This is the most comprehensive, published genetic characterization to date across all of the California Central Valley Evolutionary Significant Units (ESUs) and includes all major river drainages within each ESU (total of 17 rivers and 5 hatchery populations). These populations are the foci of considerable basic and applied scientific research given the ecological, economic, and cultural importance of salmonid species. Moreover, all Central Valley ESUs are listed as either federally threatened, endangered, or species of concern. This data set improves our ability to study basic ecological questions about salmonid biology, including testing hypotheses about population structure, genetic diversity, introgression between ESUs, and levels of gene flow among populations. Additionally, it provides a baseline to test for changes in genetic diversity due to anthropogenic and natural environmental change. For conducting individual genetic assignment testing, the data set will serve as a baseline to allow identification of future unknown samples, such as juveniles, which are not easily identified and often mix on rearing grounds, allowing us to better study migration patterns and understand fitness and survivorship. Given that many of these loci are employed by chinook researchers across the species’ range, this data set will be useful to researchers studying chinook salmon at both broad and local (Central Valley specific) scales. We hope that publication of this data set will encourage others to build upon it and share similar salmonid data sets from other regions, increasing our understanding of salmonid ecology and improving our ability to sustainably manage and restore these important species. <i>Key words</i>: <i>California; Central Valley; chinook salmon; single nucleotide polymorphisms; genetic diversity.</i>
DOI: 10.6084/m9.figshare.3559353.v1
title: Data Paper. Data Paper

description: File List fielddata.csv (MD5: 2f2331b6bc827cf6a99dda99e3699b22) genotypedata.csv (MD5: 448e3586babd9a48ea52357e214d9df5) Description This data set includes genotypes for 5000 chinook salmon individuals collected from throughout California's Central Valley between 1998–2013. We genotyped these samples using a panel of 96 single nucleotide polymorphism (SNP) markers. This is the most comprehensive, published genetic characterization to date across all of the California Central Valley Evolutionary Significant Units (ESUs) and includes all major river drainages within each ESU (total of 17 rivers and 5 hatchery populations). These populations are the foci of considerable basic and applied scientific research given the ecological, economic, and cultural importance of salmonid species. Moreover, all Central Valley ESUs are listed as either federally threatened, endangered, or species of concern. This data set improves our ability to study basic ecological questions about salmonid biology, including testing hypotheses about population structure, genetic diversity, introgression between ESUs, and levels of gene flow among populations. Additionally, it provides a baseline to test for changes in genetic diversity due to anthropogenic and natural environmental change. For conducting individual genetic assignment testing, the data set will serve as a baseline to allow identification of future unknown samples, such as juveniles, which are not easily identified and often mix on rearing grounds, allowing us to better study migration patterns and understand fitness and survivorship. Given that many of these loci are employed by chinook researchers across the species’ range, this data set will be useful to researchers studying chinook salmon at both broad and local (Central Valley specific) scales. We hope that publication of this data set will encourage others to build upon it and share similar salmonid data sets from other regions, increasing our understanding of salmonid ecology and improving our ability to sustainably manage and restore these important species. <i>Key words</i>: <i>California; Central Valley; chinook salmon; single nucleotide polymorphisms; genetic diversity.</i>
DOI: 10.6084/m9.figshare.3559350
title: Data Paper. Data Paper

description: File List SpeciesList.txt (MD5: 2368c64b689cf66e9ea3b9c9cd50372d) PairwiseList.txt (MD5: 3affef42842b44ad881c52afbfb18ec7) References.txt (MD5: b67f9c6520f279286c78c9eae1e1e440) <br> Revised Data Files August 2015 SpeciesList.txt (MD5: c7f529ed3022cbc3ed086a4f3431c03d) PairWiseList.txt (MD5: 4df0f3426bb184f387cf1bd3fb6d4267) References.txt (MD5: f4291faf30744df9f11678070caa2c1e) PairWise2References.txt (MD5: 937abdd3de410350bf0f4a8359da5607) Description A food web is an ecological network and its topological description consists of the list of nodes, i.e., trophospecies, the list of links, i.e., trophic interactions, and the direction of interactions (who is the prey and who is the predator). Food web topologies are widely used in ecology to describe structural properties of communities or ecosystems. The selection of trophospecies and trophic interactions can be realized in different manners so that many different food webs may be constructed for the same community. In the Barents Sea, many simple food webs have been constructed. We present a comprehensive food web topology for the Barents Sea ecosystem, from plankton to marine mammals. The protocol used to compile the data set includes rules for the selection of taxa and for the selection and documentation of the trophic links. The resulting topology, which includes 244 taxa and 1589 trophic links, can serve as a basis for topological analyses, comparison with other marine ecosystems, or as a basis to build simulation models of the Barents Sea ecosystem. The data set consists of three related tables: (1) the list of taxa, (2) the list of pairwise interactions, and (3) the list of bibliographical references. <i>Key words</i>: <i>benthos; birds; fish; mammals; plankton; trophic interactions.</i>
DOI: 10.6084/m9.figshare.3559350.v1
title: Data Paper. Data Paper

description: File List SpeciesList.txt (MD5: 2368c64b689cf66e9ea3b9c9cd50372d) PairwiseList.txt (MD5: 3affef42842b44ad881c52afbfb18ec7) References.txt (MD5: b67f9c6520f279286c78c9eae1e1e440) <br> Revised Data Files August 2015 SpeciesList.txt (MD5: c7f529ed3022cbc3ed086a4f3431c03d) PairWiseList.txt (MD5: 4df0f3426bb184f387cf1bd3fb6d4267) References.txt (MD5: f4291faf30744df9f11678070caa2c1e) PairWise2References.txt (MD5: 937abdd3de410350bf0f4a8359da5607) Description A food web is an ecological network and its topological description consists of the list of nodes, i.e., trophospecies, the list of links, i.e., trophic interactions, and the direction of interactions (who is the prey and who is the predator). Food web topologies are widely used in ecology to describe structural properties of communities or ecosystems. The selection of trophospecies and trophic interactions can be realized in different manners so that many different food webs may be constructed for the same community. In the Barents Sea, many simple food webs have been constructed. We present a comprehensive food web topology for the Barents Sea ecosystem, from plankton to marine mammals. The protocol used to compile the data set includes rules for the selection of taxa and for the selection and documentation of the trophic links. The resulting topology, which includes 244 taxa and 1589 trophic links, can serve as a basis for topological analyses, comparison with other marine ecosystems, or as a basis to build simulation models of the Barents Sea ecosystem. The data set consists of three related tables: (1) the list of taxa, (2) the list of pairwise interactions, and (3) the list of bibliographical references. <i>Key words</i>: <i>benthos; birds; fish; mammals; plankton; trophic interactions.</i>
DOI: 10.6084/m9.figshare.3559347
title: Data Paper. Data Paper

description: File List manipulative_experiment.csv (MD5: 28379fc1321dc2e9d53d3cdefac130a0) mensurative_study.csv (MD5: 9715ac8059fddc7856d7990d66cffcd3) Description Our data set describes the abundance of seaweeds and invertebrates found in rocky intertidal habitats on the Atlantic coast of Nova Scotia, Canada. One subset of data resulted from a manipulative experiment that tested the effects of macroalgal ecosystem engineers (<i>Ascophyllum nodosum</i> and <i>Fucus</i> spp.) on the richness, diversity, and composition of understory communities along the environmental stress gradient that occurs across elevations because of tides. Abundance data for all understory taxa are provided for 120 quadrats that characterized two macroalgal canopy treatments (canopy vs. no canopy) and three elevation zones (high, middle, and low). Another subset of data resulted from a mensurative study done regionally based on four locations spanning 350 km of coastline. Data from that study describe the abundance of seaweeds (including the canopy-forming species mentioned above) and invertebrates found at three elevation zones (high, middle, and low) for a total of 1170 quadrats. Both the manipulative experiment and the mensurative study revealed that intertidal macroalgal canopies affect the structure of benthic communities at high and middle elevations (where the canopies ameliorate the otherwise harsh conditions during low tides) but have no effects at low elevations (where conditions remain mild during low tides due to short aerial exposures). Because of its taxonomic amplitude and coverage of a wide environmental stress gradient, our data set is potentially useful to address in novel or infrequent ways other broad ecological issues, such as abundance–occupancy relationships, species co-occurrence, species abundance distributions, dominance and rarity, spatial scales of population and community variability, and distribution of phylogenetic diversity. <i>Key words</i>: <i> abundance; alga; canopy; ecosystem engineer; environmental stress gradient; intertidal; invertebrate; rocky shore; seaweed; species distribution.</i>
DOI: 10.6084/m9.figshare.3559347.v1
title: Data Paper. Data Paper

description: File List manipulative_experiment.csv (MD5: 28379fc1321dc2e9d53d3cdefac130a0) mensurative_study.csv (MD5: 9715ac8059fddc7856d7990d66cffcd3) Description Our data set describes the abundance of seaweeds and invertebrates found in rocky intertidal habitats on the Atlantic coast of Nova Scotia, Canada. One subset of data resulted from a manipulative experiment that tested the effects of macroalgal ecosystem engineers (<i>Ascophyllum nodosum</i> and <i>Fucus</i> spp.) on the richness, diversity, and composition of understory communities along the environmental stress gradient that occurs across elevations because of tides. Abundance data for all understory taxa are provided for 120 quadrats that characterized two macroalgal canopy treatments (canopy vs. no canopy) and three elevation zones (high, middle, and low). Another subset of data resulted from a mensurative study done regionally based on four locations spanning 350 km of coastline. Data from that study describe the abundance of seaweeds (including the canopy-forming species mentioned above) and invertebrates found at three elevation zones (high, middle, and low) for a total of 1170 quadrats. Both the manipulative experiment and the mensurative study revealed that intertidal macroalgal canopies affect the structure of benthic communities at high and middle elevations (where the canopies ameliorate the otherwise harsh conditions during low tides) but have no effects at low elevations (where conditions remain mild during low tides due to short aerial exposures). Because of its taxonomic amplitude and coverage of a wide environmental stress gradient, our data set is potentially useful to address in novel or infrequent ways other broad ecological issues, such as abundance–occupancy relationships, species co-occurrence, species abundance distributions, dominance and rarity, spatial scales of population and community variability, and distribution of phylogenetic diversity. <i>Key words</i>: <i> abundance; alga; canopy; ecosystem engineer; environmental stress gradient; intertidal; invertebrate; rocky shore; seaweed; species distribution.</i>
DOI: 10.6084/m9.figshare.3559344
title: Appendix A. Summary statistics and distance metrics.

description: Summary statistics and distance metrics.
DOI: 10.6084/m9.figshare.3559341
title: Appendix B. Algorithm convergence.

description: Algorithm convergence.
DOI: 10.6084/m9.figshare.3559341.v1
title: Appendix B. Algorithm convergence.

description: Algorithm convergence.
DOI: 10.6084/m9.figshare.3559338
title: Supplement 1. C++ code and R script files for summary statistics, distance metrics, population simulation, and sequential Monte Carlo algorithm used for parameter estimation of a stochastic stage-structured population model.

description: File List distanceCode.R (MD5: 263965622e4839af0d19193c0cf32195) obsDataC.R (MD5: 0347a95c067dddee0cf34fe286b7ca9c) popSimCodeC_E.R (MD5: 531aafb2d51a23449756138cd8ea994a) simCohortVec.so (MD5: 3ebd32ff70131efa625f378c59e1e46a) SMCcode_E.R (MD5: d7819abf935cec9b4d6f17962eb4fd78) execSMC_C_E.R (MD5: c2583fd6716ac06fb377f75f0fd10e4b) Description We provide functions to compute distances using all candidate summary statistics and distance metrics in distanceCode.R. obsDataC.R is a data file that was used as our "observed" data set. We simulated many data sets using popSimCodeC_E.R. This source file contains both an R function to simulate a data set and an interface to call C++ code simCohortVec.co to simulate a data set. The actual ABC SMC algorithm is coded in a function in SMCcode_E.R.
DOI: 10.6084/m9.figshare.3559335
title: Appendix A. Unsmoothed maximum likelihood phylogeny including 37 common North American freshwater green algae genera and three outgroups estimated using partial 18S ribosomal RNA and rbcl sequences available on GenBank.

description: Unsmoothed maximum likelihood phylogeny including 37 common North American freshwater green algae genera and three outgroups estimated using partial 18S ribosomal RNA and rbcl sequences available on GenBank.