cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.tv28j5c
title: Data from: Carry-over effects of early thermal conditions on somatic and germline oxidative damages are mediated by compensatory growth in sticklebacks

description: 1. Most studies of climate change impacts focus on the effects of summer
 temperatures, which can immediately impact fitness of breeders, but winter
 temperatures are expected to have a greater impact on development and
 growth of animals with long-lasting consequences. Exposure to warmer
 temperatures can increase cellular oxidative damage in ectotherms. Yet, it
 is unknown whether thermal stress during early life has prolonged effects
 on oxidative status during adulthood. 2. In an experiment using F1 fish
 originated from a wild three-spined stickleback population at the southern
 edge of its European distribution, we examined whether experimental
 thermal conditions experienced in winter had carry-over effects on
 oxidative status and telomere length, a marker of accumulated stress, in
 the soma and germline during adulthood. For this, oxidative DNA damage,
 enzymatic antioxidant activities and telomere length were measured three
 months after the termination of the temperature manipulation. In addition,
 we tested whether such delayed effects, if any, were due to individuals’
 compensatory growth after experiencing unfavourable growth conditions in
 winter. 3. Warm acclimation during winter induced increased levels of
 oxidative DNA damage in muscle and sperm and increased enzymatic
 antioxidant defences in muscle during the breeding season. Telomere length
 of adult fish was not influenced by thermal conditions experienced during
 early life. 4. Winter temperature manipulation influenced fish to alter
 the temporal pattern of growth trajectories across the juvenile and adult
 stages. Fish reared in warm winter conditions grew at a slower rate than
 the controls during the period of temperature manipulation then
 accelerated body mass gain to catch up during the breeding season. Faster
 somatic growth during the breeding season incurred a higher cost in terms
 of oxidative damage in the warm-treated individuals. 5. For the first
 time, we experimentally show the long-lasting detrimental effects of
 thermal stress and the positive link between catch-up growth and oxidative
 DNA damage in the soma and germline. Winter temperature increases due to
 climate change can reduce fertility and survival of fish by inducing
 catch-up growth. The detrimental effects of winter climate change may
 accumulate across generations through the pre-mutagenic DNA damage in the
 germline.
description: Data from the
 stickleback experiment (Kim et al. 2018)An Excel file with the
 experimental data. Each parameter is explained as a comment in the column
 title.Kim
 et al..xlsx
DOI: 10.5061/dryad.kg0mr83
title: Data from: Song complexity - no correlation between standard deviation of frequency and traditionally used song complexity metrics in passerines: a comment on Pearse et al. (2018)

description: [No abstract entered]
description: Mikula_et_al_SongComplexity
DOI: 10.5061/dryad.9tq18
title: Data from: Nitrogen deposition cancels out exotic earthworm effects on plant-feeding nematode communities

description: The activity and spread of exotic earthworms often are spatially
 correlated with N deposition because both arise from human activities.
 Exotic earthworms, in turn, can also greatly affect soil abiotic and
 biotic properties, as well as related ecological processes. Previous
 studies showed, for example, that earthworms can counteract the
 detrimental effects of plant-feeding nematodes on plant growth. However,
 potential interactive effects of N deposition and exotic earthworms on
 ecosystems are poorly understood. We explored the changes in density of
 plant-feeding nematodes in response to the presence of exotic earthworms,
 and whether these changes are altered by elevated N deposition in a
 two-factorial field mesocosm experiment at the Heshan National Field
 Research Station of Forest Ecosystem, in southern China. Our results show
 that earthworm addition marginally significantly increased the density of
 exotic earthworms and significantly increased the mass of earthworm casts.
 The total density of plant-feeding nematodes was not significantly
 affected by exotic earthworms or N deposition. However, exotic earthworms
 tended to increase the density of plant-feeding nematode taxa that are
 less detrimental to plant growth (r-strategists), while they significantly
 reduced the density of more harmful plant-feeding nematodes
 (K-strategists). Importantly, these earthworm effects were restricted to
 the ambient N deposition treatment, and elevated N deposition cancelled
 out the earthworm effect. Although exotic earthworms and N deposition
 interactively altered foliar N : P ratio in the target tree species, this
 did not result in significant changes in shoot and root biomass in the
 short term. Overall, our study indicates that N deposition can cancel out
 exotic earthworm-induced reductions in the density of harmful
 plant-feeding nematodes. These results suggest that anthropogenic N
 deposition can alter biotic interactions between exotic and native soil
 organisms with potential implications for ecosystem functioning.
description: Nitrogen deposition
 cancels out exotic earthworm effects on plant-feeding nematode
 communitiesData.xlsx
DOI: 10.5061/dryad.57vt3
title: Data from: Visual ecology of true lemurs suggests a cathemeral origin for the primate cone opsin polymorphism

description: In contrast to the majority of primates, which exhibit dedicated
 diurnality or nocturnality, all species of Eulemur are cathemeral. Color
 vision, in particular, is strongly affected by the spectral composition
 and intensity of ambient light, and the impact of activity period on the
 evolution of primate color vision is actively debated. We studied three
 groups of wild brown lemurs (Eulemur fulvus) in Ankarafantsika National
 Park, Madagascar over a one-year span. We also used non-invasive fecal DNA
 collection and analysis to study the opsin genes underlying the color
 vision of 24 individuals. We quantify the color and brightness of dietary
 fruits and modeled the chromaticity and discriminability of food objects
 to different visual phenotypes under daylight, twilight, and moonlight
 conditions. We found that E. fulvus possesses routine dichromacy, unlike
 its congener E. flavifrons, for which polymorphic trichromacy has been
 reported. Our models suggest that dichromacy is well-suited to the
 foraging ecology of E. fulvus. The performance of modeled dichromats and
 trichromats is comparable under nocturnal illuminants and the luminance
 values of most diet items are detectable across light conditions. The
 trichromatic phenotype demonstrates a modest advantage under daylight
 conditions only. Our results, taken together with reports of polymorphic
 trichromacy in E. flavifrons, suggest functional ecological variation in
 the visual system of the genus Eulemur. Interspecific phenotypic variation
 in the color vision of a genus is both unexpected and instructive.
 Ecological differences between species of Eulemur could reveal thresholds
 for the origins of polymorphic trichromacy, which preceded the evolution
 of routine trichromatic vision in humans and other primates.
description: Chromatic and luminance
 distances between fruits and leavesBlue-yellow chromatic,
 Red-green chromatic, and luminance distances between fruits and leaves for
 each plant species in the analysis.Distance.csvChromatic and luminance values of ripe fruitsBlue-yellow, red-green and luminance spectroscopic values of ripe fruits.Values.csv
DOI: 10.15468/dl.h6sras
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Decatoca spenceri",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001264-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.20fc5v4j
title: Data from: Reef fish hybridisation: lessons learnt from butterflyfishes (genus Chaetodon)

description: Natural hybridisation is widespread among coral reef fishes. However, the
 ecological promoters and evolutionary consequences of reef fish
 hybridisation have not been thoroughly evaluated. Butterflyfishes form a
 high number of hybrids and represent an appropriate group to investigate
 hybridisation in reef fishes. This study provides a rare test of
 terrestrially-derived hybridisation theory in the marine environment by
 examining hybridisation between Chaetodon trifasciatus and Chaetodon
 lunulatus at Christmas Island. Overlapping spatial and dietary ecologies
 enable heterospecific encounters. Non-assortative mating and local rarity
 of both parent species appear to permit heterospecific breeding pair
 formation. Microsatellite loci and mtDNA confirmed the status of hybrids,
 which displayed the lowest genetic diversity in the sample and used a
 reduced suite of resources, suggesting decreased adaptability. Maternal
 contribution to hybridisation was unidirectional, and no introgression was
 detected, suggesting limited, localised evolutionary consequences of
 hybridisation. Comparisons to other reef fish hybridisation studies
 revealed that different evolutionary consequences emerge, despite being
 promoted by similar factors, possibly due to the magnitude of genetic
 distance between hybridising species. This study highlights the need for
 further enquiry aimed at evaluating the importance and long-term
 consequences of reef fish hybridisation.
description: Chaetodon trifasciatus X
 C. lunulatus genotypesGenepop format input
 file utilised for population genetic analyses and DAPC. The file includes
 genotypes of both parental species and their hybrids from all locations
 investigated.genepop_input.txt
DOI: 10.5061/dryad.hb269b8
title: Data from: Past is prologue: host community assembly and the risk of infectious disease over time

description: Infectious disease risk is often influenced by host diversity, but the
 causes are unresolved. Changes in diversity are associated with changes in
 community structure, particularly during community assembly; therefore, by
 incorporating change over time, host community assembly may provide a
 framework to resolve causation. In turn, community assembly can be driven
 by many processes, including resource enrichment. To test the hypothesis
 that community assembly causally links host diversity to future disease,
 we experimentally manipulated host diversity and resource supply to hosts,
 then allowed communities to assemble for three years (surveyed 2012-2014).
 Initially, host diversity increased disease. Subsequently, host diversity
 did not directly alter disease. However, host diversity determined the
 trajectory of host community assembly, altering colonization by exotic
 host species and richness-independent host phylogenetic diversity, which
 together reversed the initial increase in disease. Ultimately,
 incorporating the temporal dimension of community assembly revealed novel
 mechanisms linking host diversity to future disease.
description: DRE Assembly Disease
 DataData file supporting the
 manuscript, "Past is prologue: Host community assembly and the risk
 of infectious disease over time". Blk is the experimental block. Plot
 is the ID of the plot. PlantS is host species richness. percov is
 logit-transformed exotic abundance. mpd.obs.z is phylogenetic
 overdispersion. ihs.load is the inverse hyperbolic sine-transformed
 community parasite load. month is the date in which the plot was surveyed.
 Div is initial host diversity (0 monocultures, 1 polycultures). Res is the
 fertilization treatment (0 ambient, 1 fertilized).DRE_Assembly_Disease_DF.csv
DOI: 10.5061/dryad.6c1h2
title: Data from: Insect mating signal and mate preference phenotypes covary among host plant genotypes

description: Sexual selection acting on small initial differences in mating signals and
 mate preferences can enhance signal-preference co-divergence and
 reproductive isolation during speciation. However, the origin of initial
 differences in sexual traits remains unclear. We asked whether biotic
 environments, a source of variation in sexual traits, may provide a
 general solution to this problem. Specifically, we asked whether genetic
 variation in biotic environments provided by host plants can result in
 signal-preference phenotypic covariance in a host-specific, plant-feeding
 insect. We used a member of the Enchenopa binotata species complex of
 treehoppers (Hemiptera: Membracidae) to assess patterns of variation in
 male mating signals and female mate preferences induced by genetic
 variation in host plants. We employed a novel implementation of a
 quantitative genetics method, rearing field-collected treehoppers on a
 sample of naturally-occurring replicated host plant clone lines. We found
 remarkably high signal-preference covariance among host plant genotypes.
 Thus, genetic variation in biotic environments influences the sexual
 phenotypes of organisms living on those environment in a way that promotes
 assortative mating among environments. This consequence arises from
 conditions likely to be common in nature (phenotypic plasticity and
 variation in biotic environments). It therefore offers a general answer to
 how divergent sexual selection may begin.
description: IIGE phenotypic
 covarianceEnchenopa treehoppers
 were reared from nymph to adult on replicated clone lines of their host
 plant Viburnum lentago. We then recorded male signals and constructed
 female mate preference functions from female responses to playback stimuli
 that varied in frequency. Male signal frequency was calculated from the
 signal waveform. Female peak preference was determined from each
 female's preference function. The columns denote the clone line and
 replicate that each treehopper developed on, an individual identifcation
 number, and the signal frequency or peak preference for each male or
 female, respectively, in hertz.IIGE cov
 dryad.xlsx
DOI: 10.5281/zenodo.18384627
title: GPS velocities and earthquake slip vectors in the Aegean
DOI: 10.5061/dryad.519qs
title: Data from: Forward modeling the rubber hand: illusion of ownership modifies motor-sensory predictions by the brain

description: The question of how we attribute observed body parts as our own, and the
 consequences of this attribution on our sensory-motor processes, is
 fundamental to understand how our brain distinguishes between self and
 other. Previous studies have identified interactions between the illusion
 of ownership, and multi-sensory integration and cross-sensory predictions
 by the brain. Here we show that illusory ownership additionally modifies
 the motor-sensory predictions by the brain. In our preliminary
 experiments, we observed a new numbness illusion following the classical
 rubber-hand illusion (RHI); brushing only the rubber hand after induction
 of the RHI results in illusory numbness in one's real hand. Previous
 studies have shown that self-generated actions (like tickling) are
 attenuated by motor-sensory predictions by the so-called forward model.
 Motivated by this finding, here we examined whether the numbness illusion
 after the RHI is different when the rubber hand is brushed oneself,
 compared with when the brushing is performed by another. We observed that,
 all other conditions remaining the same, haptic perception in the real
 hand was lower (numbness higher) during self-generated brushing. Our
 result suggests that RHI reorganizes the forward model, such that we
 predict haptic consequences of self-generated motor actions on the rubber
 hand.
description: datasets
DOI: 10.5061/dryad.tb3d0
title: Data from: Habitat geometry and limited perceptual range affect habitat choice of a trap-building predator

description: By considering various biotic and abiotic factors, organisms are expected
 to distinguish among suitable habitats of different quality and choose the
 one that offers them the highest fitness payoff. According to the
 ideal-free-distribution model, density drives organism choice and
 ultimately distribution among habitats. However, deviations from the basic
 model are common, as it does not take into account intrinsic and extrinsic
 constraints. Two important constraints are those of habitat geometry
 (e.g., habitat area, habitat shape), and perceptual range. We used a
 trap-building predator, the wormlion larva, to examine these constraints.
 We manipulated the geometry of the preferred shaded microhabitat and the
 distance of individuals from it, and assessed their effect on wormlion
 habitat choice, distribution patterns and performance. Habitat geometry
 affected wormlion microhabitat choice and distribution patterns, measured
 as distance from the habitat center and spatial pattern type, but had no
 effect on performance, expressed as the area of the pit-trap constructed.
 The interaction between habitat geometry and density was inconsistent
 regarding the distribution patterns, affecting distance from the center
 but not the spatial pattern type. Furthermore, we found that wormlions
 demonstrated a low perceptual range, which limited their ability to sense
 proximate shaded conditions. We highlight the importance of incorporating
 the interplay between habitat geometry, density and perceptual range when
 studying habitat choice and spatial patterns, and suggest that spatial
 patterns should be analyzed in more than a single way.
description: Full Data
 SetFull data set
 (experiments 1, 2 and 3)FullDataSet251217.xlsx
DOI: 10.5061/dryad.j5sf2
title: Data from: Fire increases genetic diversity of populations of Six-lined Racerunner

description: Wildfires are highly variable and can disturb habitats, leading to direct
 and indirect effects on the genetic characteristics of local populations.
 Florida scrub is a fire-dependent, highly fragmented, and severely
 threatened habitat. Understanding the effect of fire on genetic
 characteristics of the species that use this habitat is critically
 important. We investigated one such lizard, the Six-lined Racerunner
 (Aspidoscelis sexlineata), which has a strong preference for open areas.
 We collected Six-lined Racerunners (n=154) from 11 sites in Highlands
 County Florida and defined two time-since-last-fire categories: recently
 burned and long unburned. We screened genetic variation at six
 microsatellites to estimate genetic differentiation and compare genetic
 diversity among sites to determine the relationship with
 time-since-last-fire. A clear pattern exists between genetic diversity and
 time-since-last-fire in the absence of strong genetic differentiation.
 Genetic diversity was greater and inbreeding was lower in sites with more
 recent time-since-last-fire, and genetic characteristics had significantly
 larger variance in long unburned sites compared to more recently burned
 sites. Our results suggest that fire suppression increases variance in
 genetic characteristics of the Six-lined Racerunner. More generally, fire
 may benefit genetic characteristics of some species that use fire
 dependent habitats and management efforts for such severely fragmented
 habitat will be challenged by the presence of multiple species with
 incompatible fire preferences.
description: Sampling locations,
 time-since-last-fire, and microsatellite genotypes for Six-lined
 Racerunner samples from Highlands Co Florida USARagsdale et al. Dryad Data
 Submission.xlsx
DOI: 10.5061/dryad.844k8
title: Data from: Multilocus phylogeny and biogeography of the New World Pheucticus grosbeaks (Aves: Cardinalidae)

description: Using a multilocus approach, we investigated the tempo and pattern of
 diversification in a widely distributed New World songbird, the cardinalid
 genus Pheucticus. Each of the three geographic groups recovered (North
 American, Middle American, and South American) was comprised of a pair of
 currently recognized species, and four, three, and three geographically
 and genetically distinct phylogeographic lineages respectively.
 Diversification within Pheucticus appears to have occurred at a relatively
 constant pace throughout the Pleistocene and evenly across a broad
 latitudinal distribution. The Isthmus of Panama completion and Pleistocene
 glacial cycles both appear to have played prominent roles in the
 diversification of this group.
description: DNA sequences for 2
 mitochondrial and 8 nuclear genesThis zip file contains
 10 standard Nexus files with DNA sequences for 22 Pheucticus samples and a
 single outgroup taxon (Granatellus venustus) for the loci: mitochondrial
 (ND2, ATPase 8/6), two sex-linked introns (MUSK and ACO1), and six
 autosomal introns (ACA, EEF2, FGB-I5, MYC, ODC, and Anon40). See the paper
 or ask the authors for details.Pheucticus_Nexus_Files.zip
DOI: 10.5061/dryad.95sh0
title: Data from: Factors affecting the structure of Coleoptera assemblages on bracket fungi (Basidiomycota) in a Brazilian forest

description: Insect–fungal interactions are an important but understudied aspect of
 tropical forest ecology. Here we present the first large-scale study of
 insect communities feeding on the reproductive structures of macrofungi
 (basidiomes) in the Neotropics. This trophic interaction is not well
 characterized in most ecosystems; however, beetle consumption of
 basidiomes is thought to be affected by fungal factors, via mechanisms
 analogous to those observed in plant–herbivore interactions and in some
 interactions with fungi as hosts in the Holarctic region. We investigated
 how the composition of beetle assemblages varies as a function of fungal
 taxonomic distance, basidiome consistency, and hyphal systems. We
 collected 367 basidiomes belonging to the orders Polyporales and
 Hymenochaetales in the subtropical Araucaria angustifolia forest region of
 southern Brazil, along with any fauna present or without it. Basidiomes
 were maintained individually in the laboratory in plastic containers for
 up to three months to allow beetles to develop to adulthood, at which
 point the beetles were collected. We found that 207 basidiome specimens
 representing 40 species were associated with beetles. We recorded 447
 occurrences of Coleoptera, representing 90 morphospecies from 20 families.
 We found that assemblages of fungivorous Coleoptera were more similar
 among more closely related fungi. Furthermore, the beetle assemblages
 varied as a function of basidiome toughness, which is influenced by
 sporocarp consistency and hyphal system type. The associations between
 beetles and basidiomes resemble those reported previously in temperate
 zones, suggesting continuity in the structure of such associations across
 a wide latitudinal range.
description: Graf et al
 Biotropica_dataData on beetle
 (Coleoptera) assemblages on Bracket Fungi (Basidiomycota, in the orders
 Polyporales and Hymenochaetales) in a Brazilian Forest.