cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.q8473/1
title: Genetic data and results from feeding experiment

description: The main folder contains a spreadsheet (saved as both and Excel file and a csv file) that lists the genetic ancestry of individuals in terms of mistype and three nuclear markers. This file also contains the details of the feeding experiment, including weekly mass measurements and final calculations of conversion efficiency.  The main folder contains a subfolder called "AFLPs_Structure_Distruct". Within this folder the input file for the STRUCTURE analyses ("structureMatrix") is saved as both and Excel and text file. Input parameter files for the STRUCTURE analysis are also provided. The file "Distruct_K2_outfile.txt" lists the final STRUCTURE ancestry scores used in Fig.2 with individuals in the same order as listed in STRUCTURE input file (this file was produced after running the STRUCTURE output through StructureHarvester, CLUMPP and DISTRUCT).
DOI: 10.5061/dryad.r20tr/1
title: Rhoptropus_afer_morphology_data_

description: Raw morphological data
DOI: 10.5061/dryad.r20tr/2
title: Rhoptropus_afer_Structural_composition_of_avail_habitat_

description: Here are the raw measurements taken in the field to quantify the structural composition of each locality.
DOI: 10.5061/dryad.r20tr/3
title: Rhoptropus_afer_Structural_habitat_used_during_escape_

description: Here are the habitat structures used while escape during simulated predation attempts.
DOI: 10.5061/dryad.s6k44/1
title: Raw data and R code for plotting

description: Data and R code to produce figure 2, which gives (a) Percent righting (N=26 birds, number of drops as indicated) and (b) righting mode (N=26 birds, number of successful rightings as indicated), and (c) vertical force production (N=5 birds, except for N=1 at 14 dph; data represent mean ± 1 s.d.) versus age in Chukar Partridge.  Righting via roll, as accomplished by asymmetric wing and leg movements, is used prior to 14 dph.  Around 9 dph, birds switch to righting via pitch using symmetric wing motions, and vertical force production increases concomitantly.
DOI: 10.5061/dryad.10c30/1
title: Species abundance data across tall wet forest edges

description: Untransformed beetle abundance data from all plots used in this study
DOI: 10.5061/dryad.1dr06/1
title: Gherghel_et_al_Podarcis_muralis

description: Podarcis muralis distribution records used and discussed in the paper. The records are in shapefile format.
DOI: 10.5061/dryad.1kp0s/1
title: Cricket_wings_Dryad

description: Dryad repo. for Pitchers et al. 2014 "The potential influence of morphology on the evolutionary divergence of an acoustic signal" JEBlist of included files:CGwing_analyses_final_2014.Rmd		-		Rmarkdown file for the analysesCGwing_analyses_final_2014.html		-		Html document produced by 'Knitting' the Rmd fileCricket_Wing_LMs.csv			-		datasheet of landmark coordinates from wing imagesCGCricketCallMeasures.csv		-		datasheet of call structure measuresCricket_Wing_Photos.zip			-		archive containing the original, unprocessed wing images
DOI: 10.5061/dryad.1tv93/6
title: Frequency

description: Frequency of alleles used in simulations
DOI: 10.5061/dryad.2d7h5/1
title: MIPSY

description: STATA file. The variables are described in the data set. Questions: janusjakobsen-at-mac-dot-com
DOI: 10.5061/dryad.37n69/10
title: 2012 Soil moisture and temperature

description: Soil moisture and temperature for all sampling points in 2012 for upland grasslands. Data was collected in the field.
DOI: 10.5061/dryad.37n69/5
title: 2011 and 2012 precipitation and temperature

description: 2011 and 2012 precipitation and temperature data from both years. Also a column for 30 year normal accumulated precipitation in mm. Data was obtained from PRISM.
DOI: 10.5061/dryad.37n69/6
title: 2012 Plant height

description: Plant height 2012 in upland grasslands. Measured at 4 points at each sampling point and then an average was calculated. Data in cm and data collected in the field.
DOI: 10.5061/dryad.37n69/7
title: 2012 Arthropod Abundance

description: 2012 Arthropod Abundance data for each sampling point and sampling event. There are separate columns for each arthropod order. Numbers are counts. coleo=Coleoptera, colle=Collembola, de=Dermaptera, di=Diptera, ep= Ephemeroptera, he=Hemiptera, hy=Hymenoptera, le=Lepidoptera, or=Orthoptera, ps= Psocodea, s= spiders (Araneae), th=Thysanoptera. Data collected in the field and analyzed in the lab.
DOI: 10.5061/dryad.37n69/8
title: 2011 Arthropod abundance

description: 2011 Arthropod abundance for each sampling point and sampling event. There are separate columns for each arthropod order. Numbers are counts. coleo=Coleoptera, colle=Collembola, de=Dermaptera, di=Diptera, ep= Ephemeroptera, he=Hemiptera, hy=Hymenoptera, le=Lepidoptera, or=Orthoptera, ps= Psocodea, s= spiders (Araneae), th=Thysanoptera. Data collected in the field and analyzed in the lab.
DOI: 10.5061/dryad.37n69/9
title: 2011 Arthropod biomass

description: 2011 Arthropod biomass in wet meadow grasslands for each sampling point and sampling event. There are separate columns for each arthropod order. Numbers are biomass weights in mg. coleo=Coleoptera, colle=Collembola, de=Dermaptera, di=Diptera, ep= Ephemeroptera, he=Hemiptera, hy=Hymenoptera, le=Lepidoptera, or=Orthoptera, ps= Psocodea, s= spiders (Araneae), th=Thysanoptera. Arthropod orders are split up into size classes specific to each arthropod order. Data collected in the field and analyzed in the lab.
DOI: 10.5061/dryad.4fn70/1
title: Eyetracking data for UFOV-like task

description: This file contains behavioral and eyetracking data collected from participants in the experiment. It also contains the MATLAB codes used to analyze this data.
DOI: 10.5061/dryad.5fc56/2
title: Behaviour

description: This file contains the number of copulations of each male-female pair, alongside with different metrics of MHC genotype (distances or similarity between mating partners, different categorizations of MHC genotype)
DOI: 10.5061/dryad.6h3f7/5
title: Adult fitness (just day 1)
DOI: 10.5061/dryad.6h3f7/6
title: Adult fitnes (over days 1-3)
DOI: 10.5061/dryad.79t6p/1
title: Quattrini_MorphologyData

description: Morphological data on Callogorgia americana americana, C. am. delta, and Callogorgia gracilis collected from the Gulf of Mexico.
DOI: 10.5061/dryad.79t6p/2
title: Quattrini_Callogorgia_ENVABUNDATA

description: Abundances and densities for Callogorgia spp. collected in the Gulf of Mexico, with corresponding site, location, and environmental data.
DOI: 10.5061/dryad.84dp4/2
title: RSBL-2013-0125-Chemistry

description: GC-MS profiles of Pachycondyla inversa workers
DOI: 10.5061/dryad.84dp4/3
title: RSBL-2013-0125-Genotypes

description: Genotypes of Pachycondyla inversa workers and queens on 5 microsatellite loci
DOI: 10.5061/dryad.88h10/6
title: Hpy01N_lib
DOI: 10.5061/dryad.88h10/7
title: Hpy1S_lib
DOI: 10.5061/dryad.88h10/8
title: Hpy01S_lib
DOI: 10.5061/dryad.88h10/9
title: UF_lib
DOI: 10.5061/dryad.8pq6c/2
title: Gene expression Values

description: Raw values from qPCR output, standard curves from each plate; quantity of each gene for each individual
DOI: 10.5061/dryad.9061f/2
title: Cottus_threespecies

description: Genepop datafile for Cottus asper, C.cognatus and C.ricei microsatellite loci genotyped from the Peace River. (C.asper: 2 locations: Alberta, British Columbia; C. cognatus: 2 locations, Dunvegan and Many Islands park; C. ricei: 1 location, Dunvegan)
DOI: 10.5061/dryad.94f1p/1
title: Phylogenetic data matrix for Plesiosauria

description: Morphological phylogenetic data matrix for Plesiosauria analysed by Benson et al. "A giant pliosaurid skull from the Late Jurassic of England". The file is in Nexus format. The character list is available in doi:10.5061/dryad.v843v.
DOI: 10.5061/dryad.9sj49/2
title: Forbesichthys

description: File includes all raw data files and all TDT BioSig worksheets from auditory evoked potentials on all Forbesichthys trials
DOI: 10.5061/dryad.b5c1f/1
title: Experiment1_CAP_results
DOI: 10.5061/dryad.b5c1f/2
title: Experiment2_CAP__results
DOI: 10.5061/dryad.bj852/1
title: Reproductive failure of red squirrels and associated measurements

description: Data collected in the field from 1989 to 2012 on reproductive failure in red squirrels and associated variables. Columns are: LitID- litter ID # in analysis, Grid - study area in which squirrel was living, YR - Year of reproductive attempt, LN - reproductive attempt number of that year for the female (all are the first litter), BDATE - estimated parturition date of litter (based on live trap monitoring of females), FoodSup - whether squirrels were provided food supplementation (1) or not (0), MOMID - unique ear tag numbers of female squirrels, litsize - number of pups in litter, PCI - previous years spruce cone index (log transformed), weas - annual average number of weasel tracks/100km counted in area, marten - annual average number of marten tracks/100km counted in area, pYRSurv - proportion of that years cohort of juveniles that survived the winter to the following year, cold - coldest 4-day average temperature experienced during the first 14 days of lactation (Environment Canada’s National Climate Data and Information Archive (www.climate.weatheroffice.gc.ca)), mBY - birth year of the female, pred - annual average number of mustelid (marten and weasel) tracks/100km counted in area, MAge - maternal age.
DOI: 10.5061/dryad.bs42p/1
title: MECBreedfamily

description: family-level mating system and growth data
DOI: 10.5061/dryad.bs42p/2
title: MECBreedprogeny

description: individual height, heterozygosity and block data
DOI: 10.5061/dryad.c0164/6
title: male reinf learn loop prog - female mat success prop to freqs

description: Program for the section of the paper titled "Male learning model: Learning increases bias towards conspecifics and against heterospecifics III: Variation infemale mating success"
DOI: 10.5061/dryad.c740k/1
title: dataset on the survival and green area of palm seedlings

description: This excel sheet provides data on the survival and the ratio of green area in leaves of palm seedling during 20 months of experimentation in a tropical montane forest of Ecuador. Treatments in deforested area are: herbivory vs. no herbivory & open area vs. presence of the nurse plant Setaria sphacelata vs. artificial shade. Additionally, a treatment in the adjacent secondary forest has been added. 30 repetitions for each treatment.
DOI: 10.5061/dryad.d772v/1
title: concatenated.matrix-vi-24-13.codon.pos

description: Multi-gene nexus file of all the data from my third chapter, it has the gene ID's and codon calls. It is a MrBayes file.
DOI: 10.5061/dryad.d772v/2
title: i-26-13-final-mtDNA-outgroup_CPP_coalescence_clock

description: Nexus MrBayes file from the second chapter of my dissertation that describes how I set up the dated phylogeny along with the associated nucleotide data.
DOI: 10.5061/dryad.gf18v/2
title: SNP genotypes Russian River 2007-2011

description: Two column format SNP genotypes from two hatcheries (WSH and CVFF) in the Russian River.
DOI: 10.5061/dryad.gm7p3/1
title: Animal phylogenies

description: This is a zip file of the animal phylogenies used in this study. The zip file includes some phylogenies not used in the study, but were considered for use. The zip file also contains a README.md file describing its contents.
DOI: 10.5061/dryad.gm7p3/2
title: Plant phylogenies

description: This is a zip file of the animal phylogenies used in this study. The zip file includes some phylogenies not used in the study, but were considered for use. The zip file also contains a README.md file describing its contents.
DOI: 10.5061/dryad.gm7p3/3
title: Network files

description: This is a zip file of the plant-animal networks used in this study. The zip file includes some networks not used in the study, but were considered for use. The zip file also contains a README.md file describing its contents.
DOI: 10.5061/dryad.j4b12/1
title: Tandaus tandanus microsatellite calls

description: This data file includes catchment, water body (location) and latitude and longitude information for each sample used in this study. A total of eight microsatellites were genotyped for each sample, using markers developed by Rourke et al. (2010) specifically for freshwater catfish (Tandanus tandanus). Samples from Cardross Lake, Tahbilk Lagoon, Amphitheatre Reservoir, Centenary Reservoir and samples 865-875 from the Wimmera population have been genotyped previously (Rourke and Gilligan 2010). These samples were re-genotyped for this study due to difficulties calibrating the raw reads between the two studies.
DOI: 10.5061/dryad.j7230/3
title: Project file for Arlequin analyses

description: project file for software Arlequin.
DOI: 10.5061/dryad.j7230/4
title: Pairwise geographic distances among 8 plots

description: Input file for software GenAlEx.
DOI: 10.5061/dryad.jh8j7/5
title: Raw filter Images + Grids

description: These are the high-resolution filter images overlain with a "digital" grid". This grid was used to determine the position from which coloration measurements were collected from each of seven individuals from five different groups.
DOI: 10.5061/dryad.jk832/2
title: simresults

description: File of output from computer program Stabselbin3, on which results shown in Table 1 are based.
DOI: 10.5061/dryad.k37m7/4
title: ITS1_basi

description: ITS1 sequences of basidiomycetous fungi from INSD databases.
DOI: 10.5061/dryad.k37m7/5
title: ITS2_asco

description: ITS2 sequences of ascomycetous fungi from INSD databases
DOI: 10.5061/dryad.k37m7/6
title: ITS2_basi

description: ITS2 sequences of basidiomycetous fungi from INSD databases
DOI: 10.5061/dryad.m466f/25
title: RUB126_distances

description: Pairwise genetic distances at locus RUB126 between the 579 samples analyzed.  These distances were calculated using the meandistance.matrix function in the R package "polysat" version 0.1, using the Bruvo.distance measure.  Each file contains a square matrix with row names and column names (sample names), as produced by the write.csv function in R version 2.11 under default parameters.
DOI: 10.5061/dryad.n5h13/2
title: COI tree file

description: Tree file used to build tree in Figure 2.
DOI: 10.5061/dryad.nt13m/4
title: datasurvaltG1

description: juvenile survival of mites evolving in alternating vs homogeneous environments, when tested in each of these in the first generation of test (ie alternation within a single generation).
DOI: 10.5061/dryad.nt13m/5
title: datasurvaltG2

description: oviposition rate of mites evolving in alternating vs homogeneous environments, when tested in each of these in the second generation of test (ie alternation among generations).
DOI: 10.5061/dryad.nt13m/6
title: datasurvbothG

description: juvenile survival of mites evolving in alternating vs homogeneous environments, when tested in tomato or pepper
DOI: 10.5061/dryad.q36nr/2
title: mullet75_assembly

description: dataset-file
DOI: 10.5061/dryad.q8635/1
title: Mutations and MIC data

description: File contains identified mutations, library sizes and MIC measurements
DOI: 10.5061/dryad.r5k63/1
title: Alignment and phylogenetic trees

description: Sequence alignment and trees for three-locus phylogenetic analysis of legume species.
DOI: 10.5061/dryad.10c30/2
title: Environmental data set

description: Environmental variables measured in the field for each plot used in this study. CWD: Coarse Wood Debris, Plant diversity N1:  Hill number N1 diversity index score.
DOI: 10.5061/dryad.2k0ks/1
title: JEB 2014 00161 data

description: Data on sperm length, testes size, body size (elytra length), P1 and P2. Abbreviations included in column headings
DOI: 10.5061/dryad.2k462/4
title: Data for Figure 3 (part 2)

description: See Readme
DOI: 10.5061/dryad.2qk35/1
title: All parental alleles for both locations

description: Parental Genotypes for males and their mates from both locations, Texas and Florida.
DOI: 10.5061/dryad.2qk35/2
title: Zosterae Fl embryo data sheets

description: All of the embryo genotypes for each males collected in Florida.
DOI: 10.5061/dryad.2v4h6/1
title: Firman Data Biol Lett 2014
DOI: 10.5061/dryad.34jb6/7
title: 1989-2Ch

description: Example of a 1989 two "Ch" note song (.wav format, 16 bit, 44 kHz)
DOI: 10.5061/dryad.34jb6/8
title: 1989-Stutter

description: Example of a 1989 stutter song (.wav format, 16 bit, 44 kHz)
DOI: 10.5061/dryad.39vb6/1
title: Beauvoit et al._tomato fruit sugar model_high affinity_4 dpa

description: COPASI file of kinetic model of 4 DPA-aged fruit parameterized with high affinity vacuolar carriers
DOI: 10.5061/dryad.39vb6/2
title: Beauvoit et al._tomato fruit sugar model_high affinity_8dpa

description: COPASI file of kinetic model of 8 DPA-aged fruit parameterized with high affinity vacuolar carriers
DOI: 10.5061/dryad.39vb6/3
title: Beauvoit et al._tomato fruit sugar model_high affinity_15dpa

description: COPASI file of kinetic model of 15 DPA-aged fruit parameterized with high affinity vacuolar carriers
DOI: 10.5061/dryad.39vb6/4
title: Beauvoit et al._tomato fruit sugar model_high affinity_22dpa

description: COPASI file of kinetic model of 22 DPA-aged fruit parameterized with high affinity vacuolar carriers
DOI: 10.5061/dryad.39vb6/5
title: Beauvoit et al._tomato fruit sugar model_high affinity_27dpa

description: COPASI file of kinetic model of 27 DPA-aged fruit parameterized with high affinity vacuolar carriers
DOI: 10.5061/dryad.39vb6/6
title: Beauvoit et al._tomato fruit sugar model_high affinity_30 dpa

description: COPASI file of kinetic model of 30 DPA-aged fruit parameterized with high affinity vacuolar carriers
DOI: 10.5061/dryad.39vb6/7
title: Beauvoit et al._tomato fruit sugar model_high affinity_35dpa

description: COPASI file of kinetic model of 35 DPA-aged fruit parameterized with high affinity vacuolar carriers
DOI: 10.5061/dryad.39vb6/8
title: Beauvoit et al._tomato fruit sugar model_high affinity_40dpa

description: COPASI file of kinetic model of 40 DPA-aged fruit parameterized with high affinity vacuolar carriers
DOI: 10.5061/dryad.39vb6/9
title: Beauvoit et al._tomato fruit sugar model_high affinity_44 dpa

description: COPASI file of kinetic model of 44 DPA-aged fruit parameterized with high affinity vacuolar carriers
DOI: 10.5061/dryad.3dv00/1
title: SSR allelic profiles of the 68 olive cultivars from southern Italy analyzed at 12 SSR loci
DOI: 10.5061/dryad.3gk26/1
title: Arabidopsis_data_8populations_7nov12
DOI: 10.5061/dryad.43534/4
title: Escape_behavior

description: Data collected by Beatriz Willink during 20110805-20111112. No missing data. Data is the flight initiation distance (FID) in cm from an approaching bird dummy.
DOI: 10.5061/dryad.5q35k/2
title: Sample locations Amitermes meridionalis

description: These are the sample locations of all sampled colonies from the corresponding study.
DOI: 10.5061/dryad.6d186/2
title: Multiple regression data for Pickup et al.

description: This file contains the summary data used in the single and multiple regressions
DOI: 10.5061/dryad.77m77/1
title: Body size, development time, growth rate and juvenile survival

description: Data on the four juvenile traits scored and reported in the publication. Trait scores are given as means for each replicate, normally consisting of 5-10 flies. Means for each selection line can be calculated from this file. All main statitics performed on this file or on calculations of line means from this file. Details on measurements and calculations of each variable can be found in original publication.
DOI: 10.5061/dryad.77m77/2
title: wildtypes

description: Means of the four traits scored for 11 wildtype lines before experimental evolution was initiated. Further details in the original publication.
DOI: 10.5061/dryad.7dk0m36r/1
title: microsatellite data

description: Excel spreadsheet of genotypes at 13 microsatellite data for females, offspring and inferred males. Locus names are included in the first row. Missing data is indicated by 0.
DOI: 10.5061/dryad.7dk0m36r/2
title: microsatellite genotypes
DOI: 10.5061/dryad.7m6kg/24
title: Fig. 4b: ROM 60079 – Nectocaris pteryx from the Burgess Shale

description: Part, direct illumination
DOI: 10.5061/dryad.8346r/2
title: Vireya phylogeny

description: Time-calibrated phylogeny of Rhododendron section Vireya from Webb & Ree (2012).
DOI: 10.5061/dryad.9cs2v/5
title: Offspring Survival Data
DOI: 10.5061/dryad.9v852/5
title: Nannoperca cytb data for continental shelf hypothesis grouped by lineage

description: Mega file for sequence data for cytochrome b gene for testing the continental shelf hypothesis grouped by lineage.  This contains a subset of the complete datafiles.
DOI: 10.5061/dryad.c4d3j/2
title: RAxML tree - 3+ dataset with 24 partitions
DOI: 10.5061/dryad.c740k/2
title: Dataset on the portion of palm seedlings grazed

description: This dataset provides raw data on the portion of palm seedlings grazed in four experimental treatments during a 20 month experiment in the tropical montane forest of Ecuador. 30 repetitions for each treatment. Treatments in open area: control, with the nurse plant Setaria sphacelata, with artificial shade. Additional treatment in the adjacent secondary forest.
DOI: 10.5061/dryad.c740k/3
title: dataset microenvironment

description: This dataset provides average values each 30 minute during 12 days for three microenvironmental parameters in the degraded tropical montane forest of Ecuador: VPD (calculated from relative humidity and temperature 15 cm above soil surface), light intensity and soil temperature 5 cm below soil surface.
DOI: 10.5061/dryad.ch771/1
title: Delivery raw

description: Raw data of visits to the nest by female red-winged blackbirds collected in the field in spring 1989. Excel 2010 was used to make the file. See read me file for details.
DOI: 10.5061/dryad.ch771/2
title: Delivery standardized

description: Standardized and pruned data used in formal analyses presented in the publication. MS Excel was used to create the file. See read me file for additional details.
DOI: 10.5061/dryad.f4f6b/1
title: Pelletier et al_DATA

description: Records from &gt;7000 trophy bighorn rams (Ovis canadensis) harvested in Alberta, Canada, between 1974 and 2011
DOI: 10.5061/dryad.g8010/2
title: seq.data

description: Supplemental Table 1. Sequences retrieved from GenBank.
DOI: 10.5061/dryad.gd8jb/1
title: All_Data_Phentypic_and_Genomic

description: Egg-to-adult viability, Fecundity, Pi estimates, Heat knockdown and Desiccation data.
DOI: 10.5061/dryad.gd93s/5
title: Silene nutans and otites cob

description: Alignment of mitochondrial cob sequences
DOI: 10.5061/dryad.gd93s/7
title: Silene nutans and otites ABCtrp

description: Alignment of nuclear ABCtrp sequences
DOI: 10.5061/dryad.jh8j7/6
title: Raw fin clip Photographs

description: These are the raw images of caudal fin clips collected from a representative albino Micos cavefish and a representative pigmented Micos cavefish.
DOI: 10.5061/dryad.m466f/19
title: leucodermis

description: Samples in the "leucodermis" analysis group.
DOI: 10.5061/dryad.m466f/22
title: pensilvanicus

description: Samples in the "pensilvanicus" analysis group.