cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hx2g39
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callulops stictogaster (Zweifel, 1972)"
 ]
}

 The dataset includes 102 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0307871-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pjhnkb
title: Occurrence Download

description: A dataset containing 10841 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euphrasia micrantha Rchb.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 10841 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116131-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4dqn2k
title: Occurrence Download

description: A dataset containing 18876 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euphrasia salisburgensis Funck",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 18876 records from 198 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116134-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.77dc42
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amolops chayuensis Sun, Luo, Sun & Zhang, 2013"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0307858-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m4kffy
title: Occurrence Download

description: A dataset containing 263118 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geranium dissectum L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 263118 records from 1883 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116174-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12709457
title: Upload of RTX-KG2.8.4c_sentence_data.csv

description: This is an automated upload of RTX-KG2.8.4c_sentence_data.csv.
DOI: 10.5281/zenodo.12709458
title: Upload of RTX-KG2.8.4c_sentence_data.csv

description: This is an automated upload of RTX-KG2.8.4c_sentence_data.csv.
DOI: 10.5281/zenodo.12709503
title: Upload of true_false_chembl_labeled_triple.csv

description: This is an automated upload of true_false_chembl_labeled_triple.csv.
DOI: 10.5281/zenodo.12709504
title: Upload of true_false_chembl_labeled_triple.csv

description: This is an automated upload of true_false_chembl_labeled_triple.csv.
DOI: 10.5281/zenodo.12709505
title: Upload of updated_neo4j_triple_data.csv

description: This is an automated upload of updated_neo4j_triple_data.csv.
DOI: 10.5281/zenodo.12709506
title: Upload of updated_neo4j_triple_data.csv

description: This is an automated upload of updated_neo4j_triple_data.csv.
DOI: 10.5281/zenodo.12709507
title: Upload of test_df_mixtral3_icl.csv

description: This is an automated upload of test_df_mixtral3_icl.csv.
DOI: 10.5281/zenodo.12709508
title: Upload of test_df_mixtral3_icl.csv

description: This is an automated upload of test_df_mixtral3_icl.csv.
DOI: 10.5281/zenodo.12709510
title: Upload of test_df_mixtral4_icl.csv

description: This is an automated upload of test_df_mixtral4_icl.csv.
DOI: 10.5281/zenodo.12709511
title: Upload of test_df_mixtral4_icl.csv

description: This is an automated upload of test_df_mixtral4_icl.csv.
DOI: 10.18430/m38k1g
title: X-ray diffraction data for the crystal structure of ethylene glycol-bound glycerol dehydrogenase from Klebsiella pneumoniae (8K1G)
DOI: 10.5281/zenodo.12709512
title: Upload of test_df_mixtral2_icl.csv

description: This is an automated upload of test_df_mixtral2_icl.csv.
DOI: 10.5281/zenodo.12709513
title: Upload of test_df_mixtral2_icl.csv

description: This is an automated upload of test_df_mixtral2_icl.csv.
DOI: 10.18430/m38k1h
title: X-ray diffraction data for the crystal structure of ethylene glycol-bound glycerol dehydrogenase from Klebsiella pneumoniae (8K1H)
DOI: 10.18430/m38k4q
title: X-ray diffraction data for the crystal structure of nanobody HuNb103 bound to human interleukin-4 receptor subunit alpha (8K4Q)
DOI: 10.18430/m38kg2
title: X-ray diffraction data for the crystal structure of p97-N/D1 hexamer in complex with FAF1-UBX domain (8KG2)
DOI: 10.18430/m38p8e
title: X-ray diffraction data for the crystal structure of endolysin gp46 from Pseudomonas aeruginosa bacteriophage vB_PaeM_KTN6 (8P8E)
DOI: 10.5281/zenodo.12709514
title: Upload of human_labeled_neo4j.csv

description: This is an automated upload of human_labeled_neo4j.csv.
DOI: 10.5281/zenodo.12709515
title: Upload of human_labeled_neo4j.csv

description: This is an automated upload of human_labeled_neo4j.csv.
DOI: 10.18430/m38pps
title: X-ray diffraction data for the dimeric RbdA EAL, in apo state (8PPS)
DOI: 10.18430/m38s1r
title: X-ray diffraction data for the crystal structure of SHANK1 PDZ in complex with a SLiM internal ligand (8S1R)
DOI: 10.18430/m38sip
title: X-ray diffraction data for the structure of a mouse IgG antibody fragment that binds Inosine, an RNA modification (8SIP)
DOI: 10.5281/zenodo.12709516
title: Upload of labeled_dataset.csv

description: This is an automated upload of labeled_dataset.csv.
DOI: 10.5281/zenodo.12709517
title: Upload of labeled_dataset.csv

description: This is an automated upload of labeled_dataset.csv.
DOI: 10.18430/m38tca
title: X-ray diffraction data for the structure of a mouse IgG antibody antigen-binding fragment (Fab) targeting N6-methyladenosine (m6A), an RNA modification, no ligand (8TCA)
DOI: 10.18430/m38vev
title: X-ray diffraction data for the structure of a mouse IgG antibody antigen-binding fragment (Fab) targeting N6-methyladenosine (m6A), an RNA modification, m6A nucleoside ligand (8VEV)
DOI: 10.18430/m38vm2
title: X-ray diffraction data for the crystal Structure of NRAS Q61K bound to GTP (8VM2)
DOI: 10.18430/m38wt3
title: X-ray diffraction data for the crystal structure of peptidoglycan DL-endopeptidase CwlO (8WT3)
DOI: 10.5281/zenodo.12709518
title: Upload of train_df_llama_icl.csv

description: This is an automated upload of train_df_llama_icl.csv.
DOI: 10.5281/zenodo.12709519
title: Upload of train_df_llama_icl.csv

description: This is an automated upload of train_df_llama_icl.csv.
DOI: 10.18430/m38wt4
title: X-ray diffraction data for the crystal structure of DL-endopeptidase CwlO complexed with IseA (8WT4)
DOI: 10.18430/m39bja
title: X-ray diffraction data for the c. difficile Tcdb cysteine protease domain in complex with IP6 (9BJA)
DOI: 10.18430/m39ezj
title: X-ray diffraction data for the apo human TDO in complex with a bound inhibitor (Cpd-4) (9EZJ)
DOI: 10.5281/zenodo.12709520
title: Upload of train_df_mixtral2_icl.csv

description: This is an automated upload of train_df_mixtral2_icl.csv.
DOI: 10.5281/zenodo.12709521
title: Upload of train_df_mixtral2_icl.csv

description: This is an automated upload of train_df_mixtral2_icl.csv.
DOI: 10.5281/zenodo.12709522
title: Upload of test_df_gpt_3_5_turbo_icl.csv

description: This is an automated upload of test_df_gpt_3_5_turbo_icl.csv.
DOI: 10.5281/zenodo.12709523
title: Upload of test_df_gpt_3_5_turbo_icl.csv

description: This is an automated upload of test_df_gpt_3_5_turbo_icl.csv.
DOI: 10.5281/zenodo.12709524
title: Upload of true_false_chembl_labeled.csv

description: This is an automated upload of true_false_chembl_labeled.csv.
DOI: 10.5281/zenodo.12709525
title: Upload of true_false_chembl_labeled.csv

description: This is an automated upload of true_false_chembl_labeled.csv.
DOI: 10.5281/zenodo.12709526
title: Upload of train_df_mixtral3_icl.csv

description: This is an automated upload of train_df_mixtral3_icl.csv.
DOI: 10.5281/zenodo.12709527
title: Upload of train_df_mixtral3_icl.csv

description: This is an automated upload of train_df_mixtral3_icl.csv.
DOI: 10.48659/m0k4-8b86
title: Quit Rent Rolls in Philadelphia County (Penn Family Estates), Due 1688/9

description: This dataset was created from a volume listing quit rents due in Philadelphia County, 1 March 1688/9, held within the Penn Family Estates Collection at the American Philosophical Society Library. Quit rents (also quitrents or quit-rents) were fees collected by proprietors of the British colonies, in this case William Penn, to reinforce power and ownership over the land rented by farmers. They also represented a way for the English Crown to keep hold over the colonies. The dataset lists names of individuals and their status (first purchaser, renter, etc.), quantity of land in acres, dates of survey and dates of purchase, amount and form of payment of rent, and other details.


This dataset is a part of the Magazine of American Datasets (MEAD). To view more of the collection, visit https://repository.upenn.edu/exhibits/orgunit/mead.
description: The transcription and structuring of this document were undertaken by Molly E. Nebiolo and lightly edited by Cynthia Heider. Detailed information on structure, normalization, etc. can be found in the accompanying documentation. These datasets were created as part of the American Philosophical Society's Open Data Initiative (Learn more at http://diglib.amphilsoc.org/data). Although contributors took care to minimize mistakes and inconsistencies in the creation of these items, and have included any assumptions or choices made on their part that may affect interoperability or integrity of the data, APS cannot guarantee that they are free of instances of human error. They are offered "as is," and researchers are encouraged to consult the original records in digital or physical format in the event of uncertainty. If you have feedback or notice errors in the data, please contact us at digitalprojects@amphilsoc.org.
DOI: 10.5281/zenodo.12709326
title: The Earth BioGenome Project Phase II: Illuminating the Eukaryotic Tree of Life. Data file underpinning Figure 2A and Figure 2B

description: These datasheets accompany the article "The Earth BioGenome Project Phase II: Illuminating the Eukaryotic Tree of Life" in Frontiers in Science

This file contains data processed from Catalog of Life on 31 December 2023. The catalog was downloaded and post-processed to

remove prokaryotic taxa

remove extinct and fossil taxa

remove taxon names that were listed as junior synonyms

remove taxon names listed as "invalid"

Total living, valid eukaryotic genera 167,085

The taxa were sorted by the nomenclatorial Code under which they were declared (to avoid namespace clashes)

International Code for Algae, Fungi and Plants https://www.iapt-taxon.org/nomen/main.php

Algal, Fungal, Plant code genera 31,076

International Code of Zoological Nomenclature https://www.iczn.org/the-code/the-code-online/

Zoological code genera 136,009

The Code-sorted taxa were aggregated by the generic portion of their names, and two plots were generated:

a plot aggregating the cumulative number of species in genera sorted by species number (Figure 2A)

a plot illustrating the distribution of the size of genera (Figure 2B)

This data file gives access to these processed data for

Figure 2 A Data

Figure 2 B Data

The original data including the intermediate calculations of values, and the plotted graphs, are available as a GoogleDoc at https://docs.google.com/spreadsheets/d/1V-bTtWjIRasC3AgID0jGlyToKqI-H9h1aPeSxUpNrjk/edit?usp=sharing
DOI: 10.5281/zenodo.12709327
title: The Earth BioGenome Project Phase II: Illuminating the Eukaryotic Tree of Life. Data file underpinning Figure 2A and Figure 2B

description: These datasheets accompany the article "The Earth BioGenome Project Phase II: Illuminating the Eukaryotic Tree of Life" in Frontiers in Science

This file contains data processed from Catalog of Life on 31 December 2023. The catalog was downloaded and post-processed to

remove prokaryotic taxa

remove extinct and fossil taxa

remove taxon names that were listed as junior synonyms

remove taxon names listed as "invalid"

Total living, valid eukaryotic genera 167,085

The taxa were sorted by the nomenclatorial Code under which they were declared (to avoid namespace clashes)

International Code for Algae, Fungi and Plants https://www.iapt-taxon.org/nomen/main.php

Algal, Fungal, Plant code genera 31,076

International Code of Zoological Nomenclature https://www.iczn.org/the-code/the-code-online/

Zoological code genera 136,009

The Code-sorted taxa were aggregated by the generic portion of their names, and two plots were generated:

a plot aggregating the cumulative number of species in genera sorted by species number (Figure 2A)

a plot illustrating the distribution of the size of genera (Figure 2B)

This data file gives access to these processed data for

Figure 2 A Data

Figure 2 B Data

The original data including the intermediate calculations of values, and the plotted graphs, are available as a GoogleDoc at https://docs.google.com/spreadsheets/d/1V-bTtWjIRasC3AgID0jGlyToKqI-H9h1aPeSxUpNrjk/edit?usp=sharing
DOI: 10.6084/m9.figshare.26240120
title: LC-MS/MS screen of day 21 cortical neurons differentiated from <i>UBE3A</i> knockout and <i>UBE3A </i>wild-type isogenic control human induced pluripotent stem cells

description: We used tandem mass tag (TMT) labeling to profile whole-cell lysates from <i>UBE3A </i>knockout and isogenic control neurons differentiated for 21 days in neuronal culture conditions. Three independent replicates of <i>UBE3A </i>knockout and control cultures were lysed in urea lysis buffer, digested in trypsin, each lysate was labeled with a unique isobaric tandem mass tag (TMT), and the samples combined for analysis by analyzed by liquid chromatography with tandem mass spectrometry (LC-MS/MS). LC-MS/MS analysis identified a total of 5,621 proteins of which 5,590 were detected in all 6 samples. MaxQuant software (version 1.6.14.0.) was used to normalize protein signals per sample and generate relative protein abundances (expressed as fold-change in the KO from the control) and student’s t-tests used to determine significant differences.
DOI: 10.6084/m9.figshare.26240120.v1
title: LC-MS/MS screen of day 21 cortical neurons differentiated from <i>UBE3A</i> knockout and <i>UBE3A </i>wild-type isogenic control human induced pluripotent stem cells

description: We used tandem mass tag (TMT) labeling to profile whole-cell lysates from <i>UBE3A </i>knockout and isogenic control neurons differentiated for 21 days in neuronal culture conditions. Three independent replicates of <i>UBE3A </i>knockout and control cultures were lysed in urea lysis buffer, digested in trypsin, each lysate was labeled with a unique isobaric tandem mass tag (TMT), and the samples combined for analysis by analyzed by liquid chromatography with tandem mass spectrometry (LC-MS/MS). LC-MS/MS analysis identified a total of 5,621 proteins of which 5,590 were detected in all 6 samples. MaxQuant software (version 1.6.14.0.) was used to normalize protein signals per sample and generate relative protein abundances (expressed as fold-change in the KO from the control) and student’s t-tests used to determine significant differences.
DOI: 10.6084/m9.figshare.26240213
title: Data Double Pendulum Swinging Out of Phase

description: This data set show the cartesian positions of the two pivots of a double pendulum swinging in the mode where the two blocks are pi radians out of phase.
DOI: 10.15468/dl.8mtryq
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paroctopus digueti (Perrier & Rochebrune, 1894)"
 ]
}

 The dataset includes 161 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019747-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kx5cyk
title: Occurrence Download

description: A dataset containing 3231 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lymantria mathura Moore, 1865"
 ]
}

 The dataset includes 3231 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019748-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/d43beae9778169a125029fefaf1a97e6
title: CVPIA Predation Contact Point Study - 2021: Impacts of Water Diversions in the Sacramento – San Joaquin Delta

description: The Central Valley Project Improvement Act (CVPIA) has led to the implementation of a Decision Support Model (DSM) to assist in the prioritization of CVPIA restoration actions. The fall-run Chinook salmon (Oncorhynchus tshawytscha) DSM depends on a coarse-resolution salmon life-cycle model to predict the population benefits of different restoration actions and scenarios. One critical element of the life-cycle model is how to incorporate predation mortality during the juvenile rearing and outmigration portion of the salmon life-cycle in the Sacramento-San Joaquin Delta (the Delta). Of particular importance to potential restoration activities, is the predation mortality that occurs in proximity to, and as a result of contact points between predator and prey fishes. Water diversions that support agricultural and municipal use result in fish mortality through entrainment and impingement. Additionally, this infrastructure may attract both predators and prey fishes, thereby increasing predation rates and prey mortality near these anthropogenic contact points.
 Throughout the spring of 2021, we used ARIS (adaptive resolution imaging sonar; Sound Metrics) sonars to compare piscivore abundance at 30 small water diversions in the north Delta to adjacent shorelines. We used predation event recorders (PERs) to assess the predation risk of juvenile salmonids with linear distance (m) from diversions and other predation drivers in the north Delta. Finally, we used a boat electrofishing survey to determine the piscivore community structure and compare spatial trends in black bass (Micropterus spp.) CPUE and relative abundance throughout these waterways.
 Piscivore abundance was greater near small water diversions than at adjacent shorelines and the predation risk of juvenile salmonids increased with proximity to diversions. Additionally, predation risk increased with increasing piscivore abundance and decreasing water depth. The north Delta predator community was dominated by black basses (Micropterus spp.), which likely drove the negative relationship of predation risk with water depth, given habitat requirements of these species. Furthermore, increased smallmouth (Micropterus dolomieu) and Spotted Bass (Micropterus punctulatus) prevalence in our study sites compared to past Delta predation studies, may have diminished the commonly seen temperature effects on predation, given metabolic requirements of these species.
DOI: 10.15468/dl.cs4cky
title: Occurrence Download

description: A dataset containing 69011 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polytrichum commune Hedw."
 ]
}

 The dataset includes 69011 records from 558 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019749-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2gq7fw
title: CCDC 2285488: Experimental Crystal Structure Determination

description: Related Article: Jordan M. Witte, Emmanuel Ayim, Christopher J. Sams, Jasmine B. Service, Caitlyn C. Kant, Lillian Bambalas, Daniel Wright, Austin Carter, Kelly Moran, Isabella G. Rohrig, Gregory M. Ferrence, Shawn R. Hitchcock|2024|J.Org.Chem.|89|9569|doi:10.1021/acs.joc.4c01057
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2grk4y
title: CCDC 2286750: Experimental Crystal Structure Determination

description: Related Article: Ernesto Costa-Villén, Mercè Font-Bardia, Júlia Mayans, Albert Escuer|2024|Cryst.Growth Des.|24|5806|doi:10.1021/acs.cgd.4c00598
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2grk5z
title: CCDC 2286751: Experimental Crystal Structure Determination

description: Related Article: Ernesto Costa-Villén, Mercè Font-Bardia, Júlia Mayans, Albert Escuer|2024|Cryst.Growth Des.|24|5806|doi:10.1021/acs.cgd.4c00598
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2grk60
title: CCDC 2286752: Experimental Crystal Structure Determination

description: Related Article: Ernesto Costa-Villén, Mercè Font-Bardia, Júlia Mayans, Albert Escuer|2024|Cryst.Growth Des.|24|5806|doi:10.1021/acs.cgd.4c00598
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2grk71
title: CCDC 2286753: Experimental Crystal Structure Determination

description: Related Article: Ernesto Costa-Villén, Mercè Font-Bardia, Júlia Mayans, Albert Escuer|2024|Cryst.Growth Des.|24|5806|doi:10.1021/acs.cgd.4c00598
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2grk82
title: CCDC 2286754: Experimental Crystal Structure Determination

description: Related Article: Ernesto Costa-Villén, Mercè Font-Bardia, Júlia Mayans, Albert Escuer|2024|Cryst.Growth Des.|24|5806|doi:10.1021/acs.cgd.4c00598
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.