cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6193430.v1
title: Additional file 1 of The parthenocarpic gene Pat-k is generated by a natural mutation of SlAGL6 affecting fruit development in tomato (Solanum lycopersicum L.)

description: Table S1. Raw data status of whole genome re-sequencing of â MPK-1â . Table S2. Primer sequences used for fine mapping. Table S3. Primer sequences used for primer walking of the insertion in the Solyc01g093960 gene. Table S4. Primer sequences used for quantitative RT-PCR analysis of the Solyc01g093960 gene. Table S5. The information of SNPs used in QTL analysis in this study. Table S6. The information of SNPs for fine mapping of Pat-k in this study. Figure S1. Amplification products produced by the primers of 093960_fwd and 093960_rev. (XLSX 136Â kb)
DOI: 10.17632/kh3fjww93t
title: Sustainable spatial planning for windfarms in Greece

description: Scientific context Wind energy emerges as the leading RES technology anticipated to cover 25-30% of global electricity demand by 2050 [1]. The Greek State has set an ambitious national goal of achieving 35% of RES in its energy mix by 2030, with the share of wind harnessing rising to 37% of RES (7.05 GW) [2] .This is expected to bring about a conflict terrain of land competition for biodiversity conservation vs windfarm infrastructures. Hereby, we present a sustainable scenario of spatial planning for development projects to maintain the integrity of ecologically sensitive areas and to minimize fragmentation nationwide. Specifically for onshore wind energy investments, it applies as follows: (a) the currently operating windfarms continue to operate for their lifetime all over the country without limitations, (b) the windfarms that have a construction permit are allowed outside the sites of the Natura 2000 network, (c) all other forthcoming windfarm investments (production and evaluation stages) are allowed only in the investment zone, i.e. in the most fragmented zones that lie outside the Natura 2000 network. Description The database consists of five geospatial layers: (a) The investment zone (41.4% of Greek land): it includes the three most fragmented zones (very high, high and medium) according to the Landscape Fragmentation Indicator (2015), of the territory outside the terrestrial part of the Natura 2000. (b) The windfarm-free zone (58.6% of Greek land): it includes the terrestrial part of the Natura 2000 network and the two least fragmented zones (very low and low) outside the network. (c) Windfarm sites (2020): 260 applications of operating windfarms and 1578 applications of windfarms in other permission stages, both onshore and offshore. An application may consist of multiple polygons (1880 polygons in total). (d) The two versions of the Natura 2000 network. The database is linked to the paper (open access): Kati, V., Kassara, C., Vrontisi, Z., Moustakas, A. (2021) The biodiversity-wind energy-land use nexus in a global biodiversit hotspot. Science of the Total Environment. https://doi.org/10.1016/j.scitotenv.2020.144471 Significance, use, limitations The database can be used: (a) in the Strategic Environmental Planning for Renewable Energy Sources (SEA) and (b) in the spatial planning of other development projects (e.g. energy, transport, tourism). The database serves as a horizontal guideline. It does not replace Environmental Impact Assessments, Appropriate Assessments or wildlife sensitivity maps. The database is intended to be used by all stakeholders involved in the wind energy sector, such as investors, Ministry of Environment & Energy, policymakers, competent authorities, NGOs, and the general public. Funding This work was funded by the Natural Environment and Climate Change Agency. References [1] Veers P, et al. (2019) doi: 10.1126/science.aau2027. [2] National Energy and Climate Plan (FEK 4893/Β/31-12-2019)
DOI: 10.17632/xdrpswbhnh
title: Tropical South American rainfall response to Dansgaard-Oeschger stadials of Marine Isotope Stage 5

description: Tropical precipitation patterns will most likely be altered by future climate change, with major socioeconomic consequences for human populations that are highly reliant on water availability for subsistence like populations in northeastern (NE) Brazil. Socioeconomic consequences may be particularly disruptive in the occurrence of abrupt climate change. Understanding the response of tropical precipitation to abrupt climate change is a crucial task for improving future projections and devising adaptation policies. Past abrupt climate change events such as the Dansgaard-Oeschger (DO) cycles may provide relevant insights regarding the dynamics of the climate system under this type of climate change. Here we present a paleoceanographic reconstruction off NE Brazil based on geochemical analyses (stable oxygen isotopes, Mg/Ca and Ba/Ca) performed in planktonic foraminifera, that focus on DO stadials of Marine Isotope Stage 5 (MIS5). Our new Ba/Ca record shows increases in fluvial discharge linked to enhanced continental precipitation over NE Brazil during DO stadials of MIS5. Tropical precipitation patterns were altered with enhanced rainfall in NE Brazil during DO stadials as a consequence of a southward displacement of the Intertropical Convergence Zone, which, in turn, was likely a response to changes in ocean heat transport and sea ice cover, as highlighted by recent climate model simulations. The results presented here provide useful information on how abrupt climate change can impact tropical rainfall, which is crucial for tropical societies in order to delineate strategies to cope with future climate change.
DOI: 10.6084/m9.figshare.3563076.v1
title: Supplement 1. Source code and data for implementing the MCMC algorithm for the mixture t model.

description: File List script.R (MD5: 57da87fd1e041a03add66cc2af0c8933) constraints.MCMC.R (MD5: c52c9d7c30dcb95fae66d473cc4b25e1) update.mu.cpp (MD5: 8a3185afcf71659dbcfbd21be73a14f2) workspace.Rdata (MD5: 7bd75c148d65bf52ef058b182672fe2b) seal.csv (MD5: 4e8a85f13486610fbab515c2fa04bef9) Description script.R contains R code for loading the data (workspace.Rdata), necessary R packages, subroutines (update.mu.cpp), and MCMC algorithm for model fitting (constraints.MCMC.R); simulating data; fitting the model to simulated data and examining the associated results; and fitting the model to the harbor seal telemetry data used in the case study and examining the associated results. constraints.MCMC.R contains code to implement the MCMC algorithm for model fitting as outlined in Appendix B. update.mu.cpp contains optional C++ code for updating -- IMAGE: Please see in attached file. -- in the MCMC algorithm. Use argument Cpp=TRUE to the constraints.MCMC function to implement this C++ routine. workspace.Rdata contains raster data representing the support of -- IMAGE: Please see in attached file. --, bathymetry, and distance to haul-out site; a design matrix of spatially-reference habitat covariates for the resource selection function; and a spatial object containing the Argos telemetry locations of the harbor seal used in our case study. seal.csv contains the <i>x</i>- and <i>y</i>-coordinates of the telemetry locations for the harbor seal used in our case study (in Albers equal area projection), as well as the associated dates, times, and Argos location classes.
DOI: 10.6084/m9.figshare.9988610.v1
title: ERP raw data

description: This is the raw data for the part 2 (ERP, recognition test) for Fantasmas_EEG project
DOI: 10.6084/m9.figshare.28451009.v1
title: Supplementary Material for: Exploring the Interplay of Factors in Chronic Kidney Disease: Insights from a The Malaysian Cohort Study

description: Introduction:
There is an increasing prevalence of chronic kidney disease (CKD) in Malaysia, hence identifying factors associated with the early stage of CKD is crucial for preventive measures. This study investigated the association between various factors and their interaction in a multi-ethnic Malaysian cohort. 
Methods:
A nested case-control analysis was conducted on 3160 eligible participants with renal profile data from The Malaysian Cohort project. CKD status was determined by estimated glomerular filtration rate (eGFR) using the Chronic Kidney Disease Epidemiology Collaboration (CKD-EPI) equation. Multiple logistic regression analysis using the likelihood ratio method were used to identify the factors and their interaction with CKD. 
Results:
This study suggested five factors associated with CKD: gender, ethnicity, physical activity, atherogenic plasma index (AIP), and systolic blood pressure. There was an interaction between AIP and gender, with increased odds of CKD among men with high AIP. 
Conclusions:
As CKD is mainly asymptomatic until it is in the later stages, these five factors serve as valuable tools for predicting CKD and enhancing the identification of at-risk individuals, particularly among men with elevated Atherogenic Index of Plasma (AIP). Future studies should focus on using these factors, especially in preventing new CKD cases and their progression.
DOI: 10.6084/m9.figshare.5241592.v1
title: Erratum: Heme Oxygenase-1 and Acute Kidney Injury following Cardiac Surgery

description: <b><i>Background:</i></b> Intraoperative hemolysis and inflammation are associated with acute kidney injury (AKI) following cardiac surgery. Plasma-free hemoglobin induces heme oxygenase-1 (HO-1) expression. HO-1 degrades heme but increases in experimental models of AKI. This study tested the hypothesis that plasma HO-1 concentrations are associated with intraoperative hemolysis and are increased in patients that develop AKI following cardiac surgery. <b><i>Methods:</i></b> We measured plasma HO-1, free hemoglobin, and inflammatory markers in 74 patients undergoing cardiopulmonary bypass (CPB). AKI was defined as an<b> </b>increase in serum creatinine concentration of 50% or 0.3 mg/dl within 72 h of surgery. <b><i>Results:</i></b> Twenty-eight percent of patients developed AKI. HO-1 concentrations increased from 4.2 ± 0.2 ng/ml at baseline to 6.6 ± 0.5 ng/ml on postoperative day (POD) 1 (p &lt; 0.001). POD1 HO-1 concentrations were 3.1 ng/ml higher (95% CI 1.1-5.1) in AKI patients, as was the change in HO-1 from baseline to POD1 (4.4 ± 1.3 ng/ml in AKI patients vs. 1.5 ± 0.3 ng/ml in no-AKI patients, p = 0.006). HO-1 concentrations remained elevated in AKI patients even after controlling for AKI risk factors and preoperative drug therapy. Peak-free hemoglobin concentrations correlated with peak HO-1 concentrations on POD1 in patients that developed AKI (p = 0.02). Duration of CPB and post-CPB IL-6 and IL-10 concentrations were also associated with increased HO-1 on POD1. <b><i>Conclusion:</i></b> Plasma HO-1 is increased in patients that develop AKI, and CPB duration, hemolysis, and inflammation are associated with increased HO-1 concentrations following cardiac surgery. Strategies that alter hemolysis and HO-1 expression during cardiac surgery may affect risk for AKI.
DOI: 10.21233/cpgn-kx78
title: Tangra Yumco ostracode surface sample dataset

description: Raw data for the Tangra Yumco ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.19164827.v1
title: Imitation inhibition and facial expression recognition: imitation-inhibition training inhibits the impact of interference with facial mimicry

description: PsyArXiv Preprints (3 March 2022, https://psyarxiv.com/7nh6r/)<br>
DOI: 10.17632/rrjj3wmbyr
title: Journal of Islam and Social Sciences; No. 17

description: The journal is set to publish original articles on a wide range of issues including;

 Social philosophy: (in the Quran and other religious texts and the tradition, in the thought of Muslim scholars and comparison of different attitudes and approaches);
 Philosophy of social sciences: (in Islamic sources, convergence and divergence of different perspectives);
 Methodology of social sciences: (review of their function and their role in Islamic religious-Islamic social sciences);
 Social thoughts of Muslim thinkers: (social issues and strategic theories, theories, areas of sociology including sociology of religion, sociology of knowledge, historical sociology, cultural sociology);
 Religious theorizing (inferred from Islamic resources) on social issues;
 Reviewing and comparing social religious propositions of different religions with each other;
 Religious-Islamic sociology (subject, methods, theories, analysis and critique of approaches, goals and application, the relation of Islamic sociology with dominant paradigms in sociology, the role and application of Islamic sociology in Islamic and non-Islamic societies);
DOI: 10.6084/m9.figshare.28861724.v1
title: Molecular markers for <i>Richelia </i>symbionts of open ocean diatom symbioses

description: Decades of research has been devoted to understanding the occurrence, distribution, and activity of different nitrogen fixers in the global oceans. With this work we provide new methods for specific and sensitive detection of three biogeochemically important marine nitrogen fixing <i>Richelia</i> spp. symbionts of diatoms. The nine new quantitative polymerase chain reaction assays were experimentally tested in lab and field samples. The assays target three gene orthologs that when expressed can be indicative of metabolic activities between various <i>Richelia</i> spp.: phosphorus transport (<i>pstS</i>), iron transport (<i>exbB</i>), and a constitutively expressed gene for normalization <i>(rnpA</i>). Our results show that these assays are specific, can detect temporal dynamics in gene expression of lab cultures, and importantly are indicative of relative nutrient limitation (e.g., P, Fe) and are an improvement over the previously used <i>nifH</i> assays as estimations of abundance (DNA based) and metabolic activities (RNA based) were without cross-reaction.
DOI: 10.6084/m9.figshare.6360236.v2
title: Supplementary Data

description: Supplementary Data for Zhou, N., Siegel, Z.D., Zarecor, S., Lee, N., Campbell, D.A., Andorf, C.M., Nettleton, D., Lawrence-Dill, C.J., Ganapathysubramanian, B., Kelly, J.W. and Friedberg, I., 2018. Crowdsourcing image analysis for plant phenomics to generate ground truth data for machine learning. <i>PLoS computational biology</i>, <i>14</i>(7), p.e1006337.<br><br>https://journals.plos.org/ploscompbiol/article?rev=2&id=10.1371/journal.pcbi.1006337<br>
DOI: 10.17632/y428fws6b8
title: PCORM 100143 Dataset in support of - PCORM_PCORM-D-20-00032

description: Excel dataset that supports PCORM 100143
DOI: 10.15468/dl.77jjug
title: Occurrence Download

description: A dataset containing 4100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Timandra comae Schmidt, 1931"
 ]
}

 The dataset includes 4100 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009374-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/56z594pzsj
title: libdlr: Efficient imaginary time calculations using the discrete Lehmann representation

description: We introduce libdlr, a library implementing the recently introduced discrete Lehmann representation (DLR) of imaginary time Green's functions. The DLR basis consists of a collection of exponentials chosen by the interpolative decomposition to ensure stable and efficient recovery of Green's functions from imaginary time or Matsubara frequency samples. The library provides subroutines to build the DLR basis and grids, and to carry out various standard operations. The simplicity of the DLR makes it straightforward to incorporate into existing codes as a replacement for less efficient representations of imaginary time Green's functions, and libdlr is intended to facilitate this process. libdlr is written in Fortran, provides a C header interface, and contains a Python module pydlr. We also introduce a stand-alone Julia implementation, Lehmann.jl.
DOI: 10.25402/fnl.24005472.v1
title: Supplementary material: An overview of reviews with network meta-analyses comparing disease-modifying therapies for relapsing multiple sclerosis

description: Supplementary material: An overview of reviews with network meta-analyses comparing disease-modifying therapies for relapsing multiple sclerosis
DOI: 10.17632/9hgg43s6pr
title: Dataset of the impact of ‘Independent Campus – Freedom to Learn’ policy on Indonesian higher education graduates’ competencies

description: The dataset concern with the impact of the ‘Independent campus – Freedom to learn’ policy or widely known as Merdeka Belajar – Kampus Merdeka (MBKM) policy, on higher education graduates’ competence in an Indonesian private university.
DOI: 10.6084/m9.figshare.12324239.v4
title: Establishing links between Lean Product Development (LPD) practices and wastes incident to New Product Development_Supplemental Material.xlsx

description: This framework is based of a viable structure to establish relations between Lean Product Development practices, and categories of waste that have influence in New Product Development by the view of several authors. It can be observerd that there are more than four dozen types of wastes studied. More than a thousand of relationships have been established between waste and LPD practices. The article considered in its base more than 300 studies to carry out the relationships.
DOI: 10.6084/m9.figshare.16870966.v1
title: Supplementary Material for: Melanogenesis markers expression in premature graying of hair- a cross-sectional study

description: Background: Studies on mice and aging human hair follicles provide compelling evidence that graying of hair results from premature differentiation of Melanocyte stem cells (MeSC) in the niche/bulge. Objective: To analyze whether differentiation of melanocyte stem cells is responsible for premature graying of hair (PGH). Methods: Twenty- five patients of PGH (n=25) attending dermatology department were recruited. Five unpigmented and five pigmented hairs were obtained per patient by separating individual follicles by 1 mm punch biopsies. The hairs were dissected at a distance of 2 mm from the bulb to separate the stem cells (upper segment) (US) from the melanocytes (lower segment) (LS). RNA was extracted from hair follicle segments US and LS, and expression of GP100, Tyrosinase (TYR) and Tyrosinase related protein-1 (TYRP1) genes was quantified using Qiagen one-step RT-PCR kit. Results: We found melanogenesis gene expression in both temporary (US) and permanent (LS) segments of unpigmented and pigmented hair follicles. When compared between the US and LS of white hair, the expression of TYR and GP100 was much higher in US than LS, suggestive of melanogenesis in the bulge. Similarly, when compared between white and black US, the expression of all three genes was higher in white US than black US, although not statistically significant. Limitations: Low samples size and lack of data pertaining to the expression of genes at protein level are the limitations of current study. Conclusion: Even though this pilot study data yielded key information about the expression of GP100, TYR and TYRP-1 at mRNA level, further studies quantifying the expression of these genes at protein level are needed to provide additional clues to further address the results in detail.
DOI: 10.6084/m9.figshare.26063206.v1
title: Supplementary Material for: The application of Cohen’s stress buffering model for weight bias internalization in prebariatric patients

description: Introduction: Weight bias internalization (WBI) is associated with reduced psychological well-being in individuals with obesity. The aim of this study was to investigate the application of Cohen’s stress buffering model of social support for WBI on well-being in patients presenting for bariatric surgery. 
Methods: In N = 804 adult prebariatric patients, WBI, social support, depression severity, health-related quality of life (HRQOL), and self-esteem were assessed by self-report questionnaires. Structural Equation Modeling was applied to test for direct associations between social support and well-being and for a buffering effect of social support on the relationship between WBI and well-being.
Results: After controlling for age, sex, and body mass index, greater social support was directly associated with reduced depression severity and increased self-esteem, but not with increased HRQOL. Contrary to Cohen’s stress buffering model, social support showed no moderating effects on the association between WBI and depression severity, HRQOL, and self-esteem.
Conclusion: These cross-sectional results may indicate that greater social support is associated with improved well-being, supporting it as a potential coping resource in bariatric surgery. Given the absence of supporting evidence for the buffering effect in the present study, future prospective research may re-evaluate the existence of a moderating effect of social support and investigate whether support-focused interventions improve psychological well-being.
DOI: 10.6084/m9.figshare.7898279.v1
title: gVCF_HG03378

description: 1000 Genomes gVCF mapped to hs37d5 for HG03378. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.21440913.v2
title: photoacoustic_patch

description: These files are data generated in the article 'A photoacoustic patch for three-dimensional imaging of hemoglobin and core temperature'.
DOI: 10.6084/m9.figshare.5525413.v1
title: MicroCT of mouse tibiae-oim5

description: MicroCT of mouse tibiae-oim5
DOI: 10.6084/m9.figshare.5696197.v1
title: Thiol/disulfide status regulates the activity of thiol-containing kinases related to energy homeostasis in rat kidney

description: ABSTRACT Considering that thiol-containing enzymes like kinases are critical for several metabolic pathways and energy homeostasis, we investigated the effects of cystine dimethyl ester and/or cysteamine administration on kinases crucial for energy metabolism in the kidney of Wistar rats. Animals were injected twice a day with 1.6 µmol/g body weight cystine dimethyl ester and/or 0.26 µmol/g body weight cysteamine from the 16th to the 20th postpartum day and euthanized after 12 hours. Pyruvate kinase, adenylate kinase, creatine kinase activities and thiol/disulfide ratio were determined. Cystine dimethyl ester administration reduced thiol/disulfide ratio and inhibited the kinases activities. Cysteamine administration increased the thiol/disulfide ratio and co-administration with cystine dimethyl ester prevented the inhibition of the enzymes. Regression between the thiol/disulfide ratio, and the kinases activities were significant. These results suggest that redox status may regulate energy metabolism in the rat kidney. If thiol-containing enzymes inhibition and oxidative stress occur in patients with cystinosis, it is possible that lysosomal cystine depletion may not be the only beneficial effect of cysteamine administration, but also its antioxidant and thiol-protector effect.