cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8011535
title: Type 2 Diabetes

description: Dataset from the Vanderbilt sets of data. Diabetes diagnosed by A1c of 6.5 or greater. Demographics factors and lab values included. Can be used for multiple purposes. Note the various worksheets, including the codebook
DOI: 10.6084/m9.figshare.8011544.v1
title: ISS manual versus automatico.sav

description: Base de datos del artículo publicado en Plos One con doi:10.1371/journal.pone.0216206.
DOI: 10.6084/m9.figshare.8011265
title: Multiple Antibiotic Resistance in Edwardsiella tarda

description: Figure 1 Agarose gels of PCR products from <i>E.tarda</i> using universal primers targeting prokaryotic 16S rRNA (A), species specific primers (B) showing in data table (table. docx). Figure 2 Phylogenetic analysis based on 16S rRNA of <i>E. tarda</i> recovered from hybrid red tilapia in this study and other isolates retrieved from GenBank (Accession No. MK761174, NR024770, NR114737, NR026331, NR024769, KU879058, KM111593, KC570942, KC438300, DQ360844, EU259315, GQ258634, GQ292549) Figure 3 Antibiotic resistant patterns was analyzed based on antibiotic resistant results. Figure 4 The heat map test for antibiotic susceptibility was analyzed based on antibiotic resistant results showing in data table (heat.xlsx). 10 represent susceptible, 5 represent intermediated, and 1 represent resistance. The heat map was performed in R (version 3.5) Figure 5 Agarose gels of PCR products of resistant genes <i>bla<sub>TEM</sub></i>, <i>sul3</i>, <i>tetA</i> <br><br>
DOI: 10.6084/m9.figshare.8011310
title: Study of two different vinblastine dosages for treatment of mast cell tumor in dogs

description: Study of two different vinblastine dosages for treatment of mast cell tumor in dogs. Dogs were divided into two groups: Experimental Group (EG) and Control Group (CG). We selected 23 dogs that received a dose of 3 mg/m² VBL (experimental group) and 32 that received a dose of 2 mg/m² VBL (control group).
DOI: 10.6084/m9.figshare.8011310.v1
title: Study of two different vinblastine dosages for treatment of mast cell tumor in dogs

description: Study of two different vinblastine dosages for treatment of mast cell tumor in dogs. Dogs were divided into two groups: Experimental Group (EG) and Control Group (CG). We selected 23 dogs that received a dose of 3 mg/m² VBL (experimental group) and 32 that received a dose of 2 mg/m² VBL (control group).
DOI: 10.6084/m9.figshare.8011265.v1
title: Multiple Antibiotic Resistance in Edwardsiella tarda

description: Figure 1 Agarose gels of PCR products from <i>E.tarda</i> using universal primers targeting prokaryotic 16S rRNA (A), species specific primers (B) showing in data table (table. docx). Figure 2 Phylogenetic analysis based on 16S rRNA of <i>E. tarda</i> recovered from hybrid red tilapia in this study and other isolates retrieved from GenBank (Accession No. MK761174, NR024770, NR114737, NR026331, NR024769, KU879058, KM111593, KC570942, KC438300, DQ360844, EU259315, GQ258634, GQ292549) Figure 3 Antibiotic resistant patterns was analyzed based on antibiotic resistant results. Figure 4 The heat map test for antibiotic susceptibility was analyzed based on antibiotic resistant results showing in data table (heat.xlsx). 10 represent susceptible, 5 represent intermediated, and 1 represent resistance. The heat map was performed in R (version 3.5) Figure 5 Agarose gels of PCR products of resistant genes <i>bla<sub>TEM</sub></i>, <i>sul3</i>, <i>tetA</i> Figure 6 Agarose gels of ERIC-PCR, ERIC patterns were analyzed using GelJ software (version 2.0)<br>
DOI: 10.6084/m9.figshare.8011265.v3
title: Multiple Antibiotic Resistance in Edwardsiella tarda

description: Figure 1 Agarose gels of PCR products from <i>E.tarda</i> using universal primers targeting prokaryotic 16S rRNA (A), species specific primers (B) showing in data table (table. docx). Figure 2 Phylogenetic analysis based on 16S rRNA of <i>E. tarda</i> recovered from hybrid red tilapia in this study and other isolates retrieved from GenBank (Accession No. MK761174, NR024770, NR114737, NR026331, NR024769, KU879058, KM111593, KC570942, KC438300, DQ360844, EU259315, GQ258634, GQ292549) Figure 3 Antibiotic resistant patterns was analyzed based on antibiotic resistant results. Figure 4 The heat map test for antibiotic susceptibility was analyzed based on antibiotic resistant results showing in data table (heat.xlsx). 10 represent susceptible, 5 represent intermediated, and 1 represent resistance. The heat map was performed in R (version 3.5) Figure 5 Agarose gels of PCR products of resistant genes <i>bla<sub>TEM</sub></i>, <i>sul3</i>, <i>tetA</i> <br><br>
DOI: 10.6084/m9.figshare.8011265.v2
title: Multiple Antibiotic Resistance in Edwardsiella tarda

description: Figure 1 Agarose gels of PCR products from <i>E.tarda</i> using universal primers targeting prokaryotic 16S rRNA (A), species specific primers (B) showing in data table (table. docx). Figure 2 Phylogenetic analysis based on 16S rRNA of <i>E. tarda</i> recovered from hybrid red tilapia in this study and other isolates retrieved from GenBank (Accession No. MK761174, NR024770, NR114737, NR026331, NR024769, KU879058, KM111593, KC570942, KC438300, DQ360844, EU259315, GQ258634, GQ292549) Figure 3 Antibiotic resistant patterns was analyzed based on antibiotic resistant results. Figure 4 The heat map test for antibiotic susceptibility was analyzed based on antibiotic resistant results showing in data table (heat.xlsx). 10 represent susceptible, 5 represent intermediated, and 1 represent resistance. The heat map was performed in R (version 3.5) Figure 5 Agarose gels of PCR products of resistant genes <i>bla<sub>TEM</sub></i>, <i>sul3</i>, <i>tetA</i> <br><br>
DOI: 10.6084/m9.figshare.8010923
title: low resolution simulation

description: low resolution simulation
DOI: 10.6084/m9.figshare.8010923.v1
title: low resolution simulation

description: low resolution simulation
DOI: 10.6084/m9.figshare.8010824
title: Tracking Holocene drift-ice limits on the northwest–southwest Iceland shelf: Comparing proxy data with observation and historical evidence

description: We detail variations in the weight percent (wt%) of quartz, a proxy for drift ice, in fifteen marine sediment cores from the northwest, west, and southwest Iceland shelf throughout the past 10 cal ka BP. We present the first map of iceberg distributions in Iceland waters between 1983 and 2011 and a new compilation of sea-ice records in the century from 850 to 1950 CE. The wt% of quartz, determined by quantitative X-ray diffraction (qXRD) analysis, is used to evaluate changes in the importation of drift ice. Small wt% of quartz were added to milled basalt (0% quartz), and to a mixture of non-clay and clay minerals; the qXRD method replicated 0 percent quartz, while measured 1–3 percent quartz always resulted in a “presence” estimate. The outer sites in the northwest sector lie close to the average position of the sea-ice margin between 1870 and 1920 CE; the southwest shelf sites lie south of this limit. Transects of cores along the Húnaflói and Djúpáll troughs indicate that the traces of drift ice decrease rapidly landward from the outer sites. The cores from the west/southwest of Iceland have limited amounts of quartz, generally possibly limited incursions of drift ice.
DOI: 10.6084/m9.figshare.8010824.v1
title: Tracking Holocene drift-ice limits on the northwest–southwest Iceland shelf: Comparing proxy data with observation and historical evidence

description: We detail variations in the weight percent (wt%) of quartz, a proxy for drift ice, in fifteen marine sediment cores from the northwest, west, and southwest Iceland shelf throughout the past 10 cal ka BP. We present the first map of iceberg distributions in Iceland waters between 1983 and 2011 and a new compilation of sea-ice records in the century from 850 to 1950 CE. The wt% of quartz, determined by quantitative X-ray diffraction (qXRD) analysis, is used to evaluate changes in the importation of drift ice. Small wt% of quartz were added to milled basalt (0% quartz), and to a mixture of non-clay and clay minerals; the qXRD method replicated 0 percent quartz, while measured 1–3 percent quartz always resulted in a “presence” estimate. The outer sites in the northwest sector lie close to the average position of the sea-ice margin between 1870 and 1920 CE; the southwest shelf sites lie south of this limit. Transects of cores along the Húnaflói and Djúpáll troughs indicate that the traces of drift ice decrease rapidly landward from the outer sites. The cores from the west/southwest of Iceland have limited amounts of quartz, generally possibly limited incursions of drift ice.
DOI: 10.6084/m9.figshare.8010821
title: MV12

description: Data
DOI: 10.6084/m9.figshare.8010821.v1
title: MV12

description: Data
DOI: 10.6084/m9.figshare.8010701
title: Supplementary Material for: Gastrointestinal Beriberi and Wernicke’s Encephalopathy Triggered by One Session of Heavy Drinking

description: An otherwise healthy 30-year-old male acquired gastrointestinal beriberi and subsequent Wernicke’s encephalopathy after 1 session of heavy drinking. Nausea, vomiting, and anorexia relentlessly progressed. The patient developed external ophthalmoplegia after 2 months. Intravenous 1,000 mg thiamine reversed both neurologic and gastrointestinal symptoms within hours. It is hard to diagnose gastrointestinal beriberi since the symptoms are nonspecific. The patient underwent 11 emergency room visits, 3 hospital admissions, and laparoscopic cystectomy within 2 months, but the gastrointestinal symptoms continued to progress. Two months after the onset of gastrointestinal symptoms, external ophthalmoplegia appeared, and, therefore, intravenous thiamine was given. The simultaneous resolution of the debilitating gastrointestinal symptoms and external ophthalmoplegia was unique. Thiamine deficiency remains underdiagnosed and should be considered in patients who develop unexplained gastroparesis or autonomic nervous failure of the digestive system, even in the nonalcoholic population.
DOI: 10.6084/m9.figshare.8010701.v1
title: Supplementary Material for: Gastrointestinal Beriberi and Wernicke’s Encephalopathy Triggered by One Session of Heavy Drinking

description: An otherwise healthy 30-year-old male acquired gastrointestinal beriberi and subsequent Wernicke’s encephalopathy after 1 session of heavy drinking. Nausea, vomiting, and anorexia relentlessly progressed. The patient developed external ophthalmoplegia after 2 months. Intravenous 1,000 mg thiamine reversed both neurologic and gastrointestinal symptoms within hours. It is hard to diagnose gastrointestinal beriberi since the symptoms are nonspecific. The patient underwent 11 emergency room visits, 3 hospital admissions, and laparoscopic cystectomy within 2 months, but the gastrointestinal symptoms continued to progress. Two months after the onset of gastrointestinal symptoms, external ophthalmoplegia appeared, and, therefore, intravenous thiamine was given. The simultaneous resolution of the debilitating gastrointestinal symptoms and external ophthalmoplegia was unique. Thiamine deficiency remains underdiagnosed and should be considered in patients who develop unexplained gastroparesis or autonomic nervous failure of the digestive system, even in the nonalcoholic population.
DOI: 10.6084/m9.figshare.8010668
title: Maple script for memristor simulations

description: This is a maple script that enables the simulation of the electrical properties of the Hewlett Packard memristor model and a NTC thermistor model which is a memristor itself. State dependent Ohms law, corresponding state equations and resulting differential equations are solved numerically. The plots for different cases are included; These cases are: single memristor simulations of both memristors, each of both memristors in parallel with a capacitance, both memristors in parallel to each other, both memristors in parallel to each other and in parallel to a capacitance. The simulations are based on a sinusoidal voltage source without any DC offset. Simulations with an additional DC offset are conducted, as well.<br>
DOI: 10.6084/m9.figshare.8010617
title: Charity Open Access Fund (COAF) open access spend and compliance monitoring: 2017-18

description: This dataset contains details of the 2017-2018 Charity Open Access Fund (COAF) open access spend. During this period the members of COAF were Wellcome Trust, Versus Arthritis, British Heart Foundation, Bloodwise, Cancer Research UK and Parkinson’s UK. In addition to reporting spend, the data has been analysed through our “compliance monitoring” tool (developed for us by Cottage Labs) to help us determine programmatically whether the paper is in the Europe PMC repository and what licence (if any) is attached to the article. The dataset includes information when an article processing charge (APC) was levied to the COAF fund. If an author has self-archived a paper, this information is not included in this dataset. Equally, data are not included in cases where a researcher (based at an institution not in receipt of a COAF block grant) received a supplement to their grant to cover OA publishing costs. We hope that this data will be of use to help better understand the cost of OA publishing. If through use of this data you identify errors or believe the status of an article to be incorrect please notify Diego Baptista (d.baptista[at]welcome.ac.uk). We will endeavour to investigate these issues and correct errors where identified. Corrections to the dataset will be published as a new version of the dataset along with a note explaining the changes.
DOI: 10.6084/m9.figshare.8010617.v1
title: Charity Open Access Fund (COAF) open access spend and compliance monitoring: 2017-18

description: This dataset contains details of the 2017-2018 Charity Open Access Fund (COAF) open access spend. During this period the members of COAF were Wellcome Trust, Versus Arthritis, British Heart Foundation, Bloodwise, Cancer Research UK and Parkinson’s UK. In addition to reporting spend, the data has been analysed through our “compliance monitoring” tool (developed for us by Cottage Labs) to help us determine programmatically whether the paper is in the Europe PMC repository and what licence (if any) is attached to the article. The dataset includes information when an article processing charge (APC) was levied to the COAF fund. If an author has self-archived a paper, this information is not included in this dataset. Equally, data are not included in cases where a researcher (based at an institution not in receipt of a COAF block grant) received a supplement to their grant to cover OA publishing costs. We hope that this data will be of use to help better understand the cost of OA publishing. If through use of this data you identify errors or believe the status of an article to be incorrect please notify Diego Baptista (d.baptista[at]welcome.ac.uk). We will endeavour to investigate these issues and correct errors where identified. Corrections to the dataset will be published as a new version of the dataset along with a note explaining the changes.
DOI: 10.6084/m9.figshare.8010446
title: A genomic resource derived from the integration of genome sequences, expressed transcripts and genetic markers in ramie

description: A ramie genomic resource including the sequences assembled into the chromosomes using genetic map and the SNPs with the genotypes in population of QDY/ZSZ1.
DOI: 10.6084/m9.figshare.8010404
title: DigChem: Identification of disease–gene–chemical relationships from Medline abstracts

description: Paper:Jeongkyun Kim, Jung-jae Kim, Hyunju Lee* (2019) DigChem: Identification of disease-gene-chemical relationships from Medline abstracts. PLoS Computational Biology, In press.<br>Introduction:In this study, we propose a deep learning model based on bidirectional long short-term memory to identify the evidence sentences of relationships among genes, chemicals, and diseases from Medline abstracts. Then, we develop the search engine DigChem to enable disease–gene–chemical relationship searches for 35,124 genes, 56,382 chemicals, and 5,675 diseases. We show that the identified relationships are reliable by comparing them with manual curation and existing databases.<br>Description:DigChem is available at http://gcancer.org/digchem. The unique triplets identified from DigChem can be downloaded from here.
DOI: 10.6084/m9.figshare.8010404.v1
title: DigChem: Identification of disease–gene–chemical relationships from Medline abstracts

description: Paper:Jeongkyun Kim, Jung-jae Kim, Hyunju Lee* (2019) DigChem: Identification of disease-gene-chemical relationships from Medline abstracts. PLoS Computational Biology, In press.<br>Introduction:In this study, we propose a deep learning model based on bidirectional long short-term memory to identify the evidence sentences of relationships among genes, chemicals, and diseases from Medline abstracts. Then, we develop the search engine DigChem to enable disease–gene–chemical relationship searches for 35,124 genes, 56,382 chemicals, and 5,675 diseases. We show that the identified relationships are reliable by comparing them with manual curation and existing databases.<br>Description:DigChem is available at http://gcancer.org/digchem. The unique triplets identified from DigChem can be downloaded from here.
DOI: 10.6084/m9.figshare.8010389
title: seqs_16s_tiger_microbiota.fna

description: Gut microbiota and their putative metabolic functions in fragmented Bengal tiger population of Nepal<br><br>Tiger microbiota feces16s rRNA gene amplicon metagenomics of tiger feces<br>
DOI: 10.6084/m9.figshare.8010380.v1
title: A fuzzy optimization model for the electric vehicle routing problem with time windows and recharging stations

description: This is the experimental data of the manuscript entitled "A fuzzy optimization model for the electric vehicle routing problem with time windows and recharging stations". All data are saved in the file with txt format.
DOI: 10.6084/m9.figshare.8010389.v1
title: seqs.fna

description: Gut microbiota and their putative metabolic functions in fragmented Bengal tiger population of Nepal<br><br>Tiger microbiota feces16s rRNA gene amplicon metagenomics of tiger feces<br>
DOI: 10.6084/m9.figshare.8010368
title: 2018-064_De-identified data.xlsx

description: Trend of health care utilization of gout and rheumatoid arthritis patients in Hawaii
DOI: 10.6084/m9.figshare.8010368.v1
title: 2018-064_De-identified data.xlsx

description: Trend of health care utilization of gout and rheumatoid arthritis patients in Hawaii
DOI: 10.6084/m9.figshare.8010368.v3
title: 2018-064_De-identified data.xlsx

description: Trend of health care utilization of gout and rheumatoid arthritis patients in Hawaii
DOI: 10.6084/m9.figshare.8010368.v2
title: 2018-064_De-identified data.xlsx

description: Trend of health care utilization of gout and rheumatoid arthritis patients in Hawaii
DOI: 10.6084/m9.figshare.8010308
title: Additional Files Caraballo et al. G3.xlsx

description: <b>Additional Files</b> <b>Additional File 1</b>. <b>(xls). </b>Species names, phyla, database and Accession Numbers of the 189 UGGT (and UGGT-like) sequences included in this study. The criteria for excluded sequences is detailed. <b>Additional File 2. (fas).</b> Unaligned 189 UGGT (and UGGT-like) protein sequences. <b>Additional File 3. (fas).</b> Alignment of 189 UGGT (and UGGT-like) protein sequences used for phylogenetic inference. <b>Additional File 4. (doc).</b> Aminoacidic positions corresponding to each UGGT domain taken as reference sequences.
DOI: 10.6084/m9.figshare.8010308.v1
title: Additional Files Caraballo et al. G3.xlsx

description: <b>Additional Files</b> <b>Additional File 1</b>. <b>(xls). </b>Species names, phyla, database and Accession Numbers of the 189 UGGT (and UGGT-like) sequences included in this study. The criteria for excluded sequences is detailed. <b>Additional File 2. (fas).</b> Unaligned 189 UGGT (and UGGT-like) protein sequences. <b>Additional File 3. (fas).</b> Alignment of 189 UGGT (and UGGT-like) protein sequences used for phylogenetic inference. <b>Additional File 4. (doc).</b> Aminoacidic positions corresponding to each UGGT domain taken as reference sequences.
DOI: 10.6084/m9.figshare.8010272
title: Data Availability.rar

description: The Data Availability of DSC,TGA and FTIR
DOI: 10.6084/m9.figshare.8010185
title: SSVEP recordings (21 files)

description: 21 recordings SSVEP
DOI: 10.6084/m9.figshare.8010272.v1
title: Data Availability.rar

description: The Data Availability of DSC,TGA and FTIR
DOI: 10.6084/m9.figshare.8010065
title: Structure output for the fiordland crested penguin and the snares crested penguin (without location priors)

description: This file contains the structure input file (.str, .txt) and the plots (.html) generated for different values of <i>K</i> in Structure, using the filtered SNP dataset that contains the fiordland crested penguin (<i>E. pachyrhynchus</i>) and the snares crested penguin (<i>E. robustus</i>), without location priors.
DOI: 10.6084/m9.figshare.8010041
title: Structure output for the snares crested penguin (without location priors)

description: This file contains the structure input file (.str, .txt) and the plots (.html) generated for different values of <i>K</i> in Structure, using the filtered SNP dataset that contains the snares crested penguin (<i>E. robustus</i>), without location priors.
DOI: 10.6084/m9.figshare.8010053
title: Structure output for the fiordland crested penguin and the snares crested penguin (with location priors)

description: This file contains the structure input file (.str, .txt) and the plots (.html) generated for different values of <i>K</i> in Structure, using the filtered SNP dataset that contains the fiordland crested penguin (<i>E. pachyrhynchus</i>) and the snares crested penguin (<i>E. robustus</i>), with location priors.
DOI: 10.6084/m9.figshare.8010053.v1
title: Structure output for the fiordland crested penguin and the snares crested penguin (with location priors)

description: This file contains the structure input file (.str, .txt) and the plots (.html) generated for different values of <i>K</i> in Structure, using the filtered SNP dataset that contains the fiordland crested penguin (<i>E. pachyrhynchus</i>) and the snares crested penguin (<i>E. robustus</i>), with location priors.
DOI: 10.6084/m9.figshare.8010065.v1
title: Structure output for the fiordland crested penguin and the snares crested penguin (without location priors)

description: This file contains the structure input file (.str, .txt) and the plots (.html) generated for different values of <i>K</i> in Structure, using the filtered SNP dataset that contains the fiordland crested penguin (<i>E. pachyrhynchus</i>) and the snares crested penguin (<i>E. robustus</i>), without location priors.
DOI: 10.6084/m9.figshare.8009987
title: Structure output for the snares crested penguin (with location priors)

description: This file contains the structure input file (.str, .txt) and the plots (.html) generated for different values of <i>K</i> in Structure, using the filtered SNP dataset that contains the snares crested penguin (<i>E. robustus</i>), with location priors.
DOI: 10.6084/m9.figshare.8009975
title: Structure output for the fiordland crested penguin (without location priors)

description: This file contains the structure input file (.str, .txt) and the plots (.html) generated for different values of <i>K</i> in Structure, using the filtered SNP dataset that contains the fiordland crested penguin (<i>E. pachyrhynchus</i>), without location priors.
DOI: 10.6084/m9.figshare.8009987.v1
title: Structure output for the snares crested penguin (with location priors)

description: This file contains the structure input file (.str, .txt) and the plots (.html) generated for different values of <i>K</i> in Structure, using the filtered SNP dataset that contains the snares crested penguin (<i>E. robustus</i>), with location priors.