cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7950752
title: Additional file 2: of Comparative transcriptome analysis and ChIP-sequencing reveals stage-specific gene expression and regulation profiles associated with pollen wall formation in Brassica rapa

description: Table S1. Summary of Brassica rapa assembled transcriptome. Table S2. Statistics of annotation results for Brassica rapa Unigenes. Table S3. The expression of DEGs in floral buds of the fertile and sterile lines (RPKM value). Table S4. The significantly enriched Gene Ontology (GO) terms by DEGs at each stage. Table S5. The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway by DEGs at each stage. Table S6. Expressional changes of putative transcription factors. Table S7. GO analysis of DEGs enriched for H3K4me3 or H3K27me3. Table S8. Primers used in this article. (XLSX 971 kb)
DOI: 10.6084/m9.figshare.24210927
title: Discussion on the thickness of cantilever.csv

description: Data of different thickness of cantilever.
DOI: 10.6084/m9.figshare.24210930
title: Discussion on the target area.csv

description: Data of different target area.
DOI: 10.6084/m9.figshare.24210930.v1
title: Discussion on the target area.csv

description: Data of different target area.
DOI: 10.6084/m9.figshare.16863834
title: Additional file 3 of Identification of GROWTH-REGULATING FACTOR transcription factors in lettuce (Lactuca sativa) genome and functional analysis of LsaGRF5 in leaf size regulation

description: Additional file 3: Table S2. The length and width of LsaGRF5-OE and Lsa-miR396a-OE leaves
DOI: 10.6084/m9.figshare.24210945
title: Discussion on the panda fiber length.csv

description: Data of different panda fiber length.
DOI: 10.6084/m9.figshare.24210945.v1
title: Discussion on the panda fiber length.csv

description: Data of different panda fiber length.
DOI: 10.6084/m9.figshare.24210960
title: Spectral data.CSV

description: Spectral data of h=0.3
DOI: 10.6084/m9.figshare.16863837
title: Additional file 4 of Identification of GROWTH-REGULATING FACTOR transcription factors in lettuce (Lactuca sativa) genome and functional analysis of LsaGRF5 in leaf size regulation

description: Additional file 4: Table S3. The sequences of Primers used in this study
DOI: 10.6084/m9.figshare.16863831
title: Additional file 2 of Identification of GROWTH-REGULATING FACTOR transcription factors in lettuce (Lactuca sativa) genome and functional analysis of LsaGRF5 in leaf size regulation

description: Additional file 2: Table S1. Number of GRF genes and miR396s have been identified in different species
DOI: 10.6084/m9.figshare.16863876
title: Additional file 2 of Comparing COVID-19 physical distancing policies: results from a physical distancing intensity coding framework for Botswana, India, Jamaica, Mozambique, Namibia, Ukraine, and the United States

description: Additional file 2
DOI: 10.6084/m9.figshare.20009663.v1
title: Effects of dietary lysozyme on immune response and fecal microflora in both sows and their offspring

description: ABSTRACT Two studies were conducted to investigate the effects of dietary lysozyme on immune response, fecal microflora in sows and their offspring fed lysozyme from late gestation to the onset of lactation, and growth performance in weaned piglets. Four antibiotic-based treatments (chlortetracycline, colistin, and lysozyme) were applied in experiment 1. Lysozyme addition significantly increased final body weight, average daily gain, and average daily feed intake, improved feed:gain ratio (F:G), and decreased diarrhea rate in weaned piglets. In experiment 2, postpartum sows were fed diets either with amoxicillin and cephalosporin (SC) or lysozyme (SE). Piglets from SC sows were administered enrofloxacin and those from SE sows were administered lysozyme. Lysozyme treatment decreased serum IL-1, IL-6, and IL-10, but did not influence IL-8, TNF-α, or IFN-γ in weaned piglets. Sequencing revealed that lysozyme significantly decreased Chao-1 index in sows and weaned piglets, increased Bifidobacterium longum in sows, and Lactobacillus coleohominis, L. mucosae, L. amylovorus, and L. hamsteri in weaned piglets. The results suggest that dietary supplementation of lysozyme improved the growth performance of weaned piglets, and dietary supplementation of lysozyme for sows increased immune function and modulated the intestinal flora structure in sows and their offspring.
DOI: 10.6084/m9.figshare.21582350.v1
title: Additional file 2 of Identification of LsPIN1 gene and its potential functions in rhizome turning of Leymus secalinus

description: Additional file 2: Table S1. The primers used in this study.
DOI: 10.25549/usctheses-ouc1335472
title: Current Diss 7_31finalfinalfinal
DOI: 10.6084/m9.figshare.25188788
title: Data for the article <i>Toxoplasma</i> Infection and Its Sequential Impact on Physical Health, Stress, and Anxiety: Testing the Stress-Coping Hypothesis in a Nonclinical Sample

description: <i>Toxoplasma gondii</i>, a feline parasite with a wide range of intermediate hosts, infects about a third of the global population. Previously thought to be asymptomatic, research over the past 30 years reveals that life-long latent toxoplasmosis causes discernible psychological and behavioral changes in infected humans. These changes often intensify with time post-infection. These alterations, similar to those observed in infected laboratory and wild-living animals, are believed to be the parasite's way of enhancing its transmission from intermediate to definitive hosts. However, in humans, many behavioral effects of toxoplasmosis manifest differently between genders, leading to the proposal of the Stress-Coping Hypothesis. This theory suggests that the health deterioration from toxoplasmosis results in chronic stress, with men and women responding with distinct coping strategies, thus explaining the gender-specific behavioral differences. This study, conducted on 2,282 individuals who had previously been tested for toxoplasmosis, sought to examine this hypothesis through a survey that included the Perceived Stress Scale and the State-Trait Anxiety Inventory X-2. Results confirmed poorer health, higher stress, and anxiety levels among infected participants. Path analysis showed toxoplasmosis directly negatively impacts physical health, which in turn directly and indirectly (via deteriorated mental health) increases stress and anxiety among infected individuals. This pattern was not seen with borreliosis, serving as a negative control, underscoring the unique impact of toxoplasmosis on human physical and mental health, and well-being.<br>
DOI: 10.25549/usctheses-ouc1342486
title: Introduction
DOI: 10.25549/usctheses-ouc1343546
title: MPLATEGOOD_TEMPLATETHESIS.DVI
DOI: 10.25549/usctheses-ouc1343243
title: Dissertation Draft - Kyle Nakamura
DOI: 10.6084/m9.figshare.16863831.v1
title: Additional file 2 of Identification of GROWTH-REGULATING FACTOR transcription factors in lettuce (Lactuca sativa) genome and functional analysis of LsaGRF5 in leaf size regulation

description: Additional file 2: Table S1. Number of GRF genes and miR396s have been identified in different species
DOI: 10.6084/m9.figshare.20009663
title: Effects of dietary lysozyme on immune response and fecal microflora in both sows and their offspring

description: ABSTRACT Two studies were conducted to investigate the effects of dietary lysozyme on immune response, fecal microflora in sows and their offspring fed lysozyme from late gestation to the onset of lactation, and growth performance in weaned piglets. Four antibiotic-based treatments (chlortetracycline, colistin, and lysozyme) were applied in experiment 1. Lysozyme addition significantly increased final body weight, average daily gain, and average daily feed intake, improved feed:gain ratio (F:G), and decreased diarrhea rate in weaned piglets. In experiment 2, postpartum sows were fed diets either with amoxicillin and cephalosporin (SC) or lysozyme (SE). Piglets from SC sows were administered enrofloxacin and those from SE sows were administered lysozyme. Lysozyme treatment decreased serum IL-1, IL-6, and IL-10, but did not influence IL-8, TNF-α, or IFN-γ in weaned piglets. Sequencing revealed that lysozyme significantly decreased Chao-1 index in sows and weaned piglets, increased Bifidobacterium longum in sows, and Lactobacillus coleohominis, L. mucosae, L. amylovorus, and L. hamsteri in weaned piglets. The results suggest that dietary supplementation of lysozyme improved the growth performance of weaned piglets, and dietary supplementation of lysozyme for sows increased immune function and modulated the intestinal flora structure in sows and their offspring.
DOI: 10.25549/usctheses-ouc1341433
title: Microsoft Word - ARTIST AS REPORTER resubmit2
DOI: 10.25549/usctheses-ouc1341786
title: Collated-9-14-11
DOI: 10.25549/usctheses-ouc1341685
title: Microsoft Word - piunova_tss.doc
DOI: 10.25549/usctheses-ouc1337727
title: PULSED INFRARED DESORPTION OF CO2 GUEST MOLECULES
DOI: 10.25549/usctheses-ouc1342234
title: Microsoft Word - $ASQ102797_supp_undefined_C82BF10E-B24A-11E0-AD7F-D002D352ABB1.docx
DOI: 10.25549/usctheses-ouc1338584
title: The Political Representation of Kurdish and Conservative Muslim Women in Turkey (1990-2010)
DOI: 10.25549/usctheses-ouc1343041
title: 0725-1st revision
DOI: 10.25549/usctheses-ouc1342038
title: DissertationTitle
DOI: 10.25549/usctheses-ouc1344435
title: Microsoft Word - $ASQ112217_supp_undefined_79E4D690-D4DD-11E0-B309-1C08D352ABB1.doc
DOI: 10.25549/usctheses-ouc1343344
title: Microsoft Word - $ASQ116013_supp_665C9512-F2E8-11E0-ACCD-A3E19D1A67F9.docx
DOI: 10.25549/usctheses-ouc1343445
title: Microsoft Word - Dissertation Template.docx
DOI: 10.25549/usctheses-ouc1363136
title: Microsoft Word - Christensen Dissertation Final.docx
DOI: 10.6084/m9.figshare.16864168.v1
title: Tumor suppressor TET2 safeguards enhancers from aberrant DNA methylation and epigenetic reprogramming in ERα-positive breast cancer cells

description: Aberrant DNA methylation is an epigenetic hallmark of malignant tumors. The DNA methylation level is regulated by not only DNA methyltransferases (DNMTs) but also Ten-Eleven Translocation (TET) family proteins. However, the exact role of <i>TET</i> genes in breast cancer remains controversial. Here, we uncover that the ERα-positive breast cancer patients with high <i>TET2</i> mRNA expression had better overall survival rates. Consistently, knockout of <i>TET2</i> promotes the tumorigenesis of ERα-positive MCF7 breast cancer cells. Mechanistically, TET2 loss leads to aberrant DNA methylation (gain of 5mC) at a large proportion of enhancers, accompanied by significant reduction in H3K4me1 and H3K27ac enrichment. By analyzing the epigenetically reprogrammed enhancers, we identify estrogen responsive element (<i>ERE</i>) as one of the enriched motifs of transcriptional factors. Importantly, TET2 loss impairs 17beta-estradiol (E2)-induced transcription of the epigenetically reprogrammed <i>EREs</i>-associated genes through attenuating the binding of ERα. Taken together, these findings shed light on our understanding of the epigenetic mechanisms underlying the enhancer reprogramming during breast cancer pathogenesis.
DOI: 10.6084/m9.figshare.21582770.v1
title: Additional file 2 of Cost-effectively dissecting the genetic architecture of complex wool traits in rabbits by low-coverage sequencing

description: Additional file 2: Table S1. Genotype accuracy and concordance of imputation obtained with the three pipelines on 15 individuals. Table S2. Genotype accuracy and concordance of imputation by the three pipelines with the MAF ranges. Table S3. Genotype accuracy and concordance of imputation with different sample size and depth by BaseVar + STITCH. Table S4. Variant analysis by regions and functions. Table S5. LD decay in the Angora rabbit population. Table S6. Genes located in the selected regions in the Angora rabbit population. Table S7. Enrichment of genes located in the selected regions in the Angora rabbit population. Table S8. LD decay in the Angora and wild rabbit populations. Table S9. Genes located in the selected regions between Angora and wild rabbits. Table S10. Enrichment of genes located in the selected regions between Angora and wild rabbits. Table S11. Genes located in the common regions between within-breed and cross-breed signatures of selection. Table S12. Enrichment of genes located in the common regions between within-breed and cross-breed signatures of selection. Table S13. Significant SNPs for DFW. Table S14. Significant SNPs for CVDFW. Table S15. Significant SNPs for LFW. Table S16. Significant SNPs for BW. Table S17. SNP-based heritability. Table S18. QTL contribution to phenotypic variance. Table S19. Genes overlapping with by QTL.
DOI: 10.25549/usctheses-ouc1349581
title: Chapter 1:  Introduction
DOI: 10.25549/usctheses-ouc1352640
title: Abstract
DOI: 10.25549/usctheses-ouc1359799
title: 376377000M000i000c000r000o000s000o000f000t000 000W000o000r000d000 000-000 000D000i000s000s000e000r000t000a000t000i000o000n000 000S000u000b000m000i000s000s000i0
DOI: 10.25549/usctheses-ouc1344615
title: Preview of ?thesis_main.pdf?
DOI: 10.25549/usctheses-ouc1361347
title: 1-TitlePage
DOI: 10.25549/usctheses-ouc1349682
title: Microsoft Word - Ji_Dissertation_revision
DOI: 10.25549/usctheses-ouc1362407
title: Microsoft Word - $ASQ113886_supp_undefined_9FE98E46-04AB-11E1-B597-20583012225A.doc
DOI: 10.6084/m9.figshare.16863834.v1
title: Additional file 3 of Identification of GROWTH-REGULATING FACTOR transcription factors in lettuce (Lactuca sativa) genome and functional analysis of LsaGRF5 in leaf size regulation

description: Additional file 3: Table S2. The length and width of LsaGRF5-OE and Lsa-miR396a-OE leaves
DOI: 10.25549/usctheses-ouc1359991
title: EAffuso-Dissertation-Final
DOI: 10.25549/usctheses-ouc1353684
title: Microsoft Word - -Dissertation (11, 10.21=FL).doc
DOI: 10.6084/m9.figshare.16863837.v1
title: Additional file 4 of Identification of GROWTH-REGULATING FACTOR transcription factors in lettuce (Lactuca sativa) genome and functional analysis of LsaGRF5 in leaf size regulation

description: Additional file 4: Table S3. The sequences of Primers used in this study
DOI: 10.25549/usctheses-ouc1357832
title: Full Draft 111031
DOI: 10.25549/usctheses-ouc1363722
title: Unsettling the Nation
DOI: 10.25549/usctheses-ouc1366309
title: Table of Contents
DOI: 10.25549/usctheses-ouc1364714
title: Microsoft Word - 1_Front matter FINAL.doc
DOI: 10.25549/usctheses-ouc1360092
title: Microsoft Word - Thesis of Hee Jin Kim-FINAL.docx
DOI: 10.25549/usctheses-ouc1366832
title: Microsoft Word - Exactly Obvious - Final Review-2.docx
DOI: 10.25549/usctheses-ouc1366910
title: joo-hee-oh-june24
DOI: 10.25549/usctheses-ouc1353886
title: Microsoft Word - JiyeKim_Thesis_Revision_ThesisEditor.docx
DOI: 10.17638/datacat.liverpool.ac.uk/2595
title: Consumer preferences, and willingness to pay for safe pork products in rural Kenya
DOI: 10.25549/usctheses-ouc1358034
title: Microsoft Word - TaussD4109701699.docx
DOI: 10.25549/usctheses-ouc1348304
title: Microsoft Word - $ASQ100489_supp_undefined_9C841A88-B234-11E0-8B96-E32D9E1A67F9.doc
DOI: 10.25549/usctheses-ouc1349985
title: Microsoft Word - $ASQ113561_supp_FDD9BAD4-00DD-11E1-B038-F067D352ABB1.docx
DOI: 10.6084/m9.figshare.16863876.v1
title: Additional file 2 of Comparing COVID-19 physical distancing policies: results from a physical distancing intensity coding framework for Botswana, India, Jamaica, Mozambique, Namibia, Ukraine, and the United States

description: Additional file 2
DOI: 10.25549/usctheses-ouc1364916
title: draft.dvi
DOI: 10.6084/m9.figshare.8874827
title: Additional file 2: of A pollution gradient contributes to the taxonomic, functional, and resistome diversity of microbial communities in marine sediments

description: Table S2. Significant statistical comparison result on the top 50 abundant prokaryotes at phylum/family/genus levels. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.8874827.v1
title: Additional file 2: of A pollution gradient contributes to the taxonomic, functional, and resistome diversity of microbial communities in marine sediments

description: Table S2. Significant statistical comparison result on the top 50 abundant prokaryotes at phylum/family/genus levels. (XLSX 46 kb)
DOI: 10.25549/usctheses-ouc1348405
title: Microsoft Word - DEXTER-FinalDraftJuly2011.docx
DOI: 10.6084/m9.figshare.14766990
title: Additional file 3 of Identification of prognostic markers for hepatocellular carcinoma based on the epithelial-mesenchymal transition-related gene BIRC5

description: Additional file 3.
DOI: 10.25549/usctheses-ouc1355409
title: __F_A.eps
DOI: 10.6084/m9.figshare.21582806
title: Additional file 1 of CX3CL1 promotes cell sensitivity to ferroptosis and is associated with the tumor microenvironment in clear cell renal cell carcinoma

description: Additional file 1: Table 1. Abbreviations of cancers in the TCGA-Pancancer cohort.
DOI: 10.6084/m9.figshare.8874833
title: Additional file 3: of A pollution gradient contributes to the taxonomic, functional, and resistome diversity of microbial communities in marine sediments

description: Table S3. Significantly enriched KEGG pathways in Centre Island comparing to Tung Ping Chau. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8874833.v1
title: Additional file 3: of A pollution gradient contributes to the taxonomic, functional, and resistome diversity of microbial communities in marine sediments

description: Table S3. Significantly enriched KEGG pathways in Centre Island comparing to Tung Ping Chau. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.16864168
title: Tumour suppressor TET2 safeguards enhancers from aberrant DNA methylation and epigenetic reprogramming in ERα-positive breast cancer cells

description: Aberrant DNA methylation is an epigenetic hallmark of malignant tumours. The DNA methylation level is regulated by not only DNA methyltransferases (DNMTs) but also Ten-Eleven Translocation (TET) family proteins. However, the exact role of <i>TET</i> genes in breast cancer remains controversial. Here, we uncover that the ERα-positive breast cancer patients with high <i>TET2</i> mRNA expression had better overall survival rates. Consistently, knockout of <i>TET2</i> promotes the tumorigenesis of ERα-positive MCF7 breast cancer cells. Mechanistically, TET2 loss leads to aberrant DNA methylation (gain of 5mC) at a large proportion of enhancers, accompanied by significant reduction in H3K4me1 and H3K27ac enrichment. By analysing the epigenetically reprogrammed enhancers, we identify oestrogen responsive element (<i>ERE</i>) as one of the enriched motifs of transcriptional factors. Importantly, TET2 loss impairs 17beta-oestradiol (E2)-induced transcription of the epigenetically reprogrammed <i>EREs</i>-associated genes through attenuating the binding of ERα. Taken together, these findings shed light on our understanding of the epigenetic mechanisms underlying the enhancer reprogramming during breast cancer pathogenesis.
DOI: 10.6084/m9.figshare.16864168.v2
title: Tumour suppressor TET2 safeguards enhancers from aberrant DNA methylation and epigenetic reprogramming in ERα-positive breast cancer cells

description: Aberrant DNA methylation is an epigenetic hallmark of malignant tumours. The DNA methylation level is regulated by not only DNA methyltransferases (DNMTs) but also Ten-Eleven Translocation (TET) family proteins. However, the exact role of <i>TET</i> genes in breast cancer remains controversial. Here, we uncover that the ERα-positive breast cancer patients with high <i>TET2</i> mRNA expression had better overall survival rates. Consistently, knockout of <i>TET2</i> promotes the tumorigenesis of ERα-positive MCF7 breast cancer cells. Mechanistically, TET2 loss leads to aberrant DNA methylation (gain of 5mC) at a large proportion of enhancers, accompanied by significant reduction in H3K4me1 and H3K27ac enrichment. By analysing the epigenetically reprogrammed enhancers, we identify oestrogen responsive element (<i>ERE</i>) as one of the enriched motifs of transcriptional factors. Importantly, TET2 loss impairs 17beta-oestradiol (E2)-induced transcription of the epigenetically reprogrammed <i>EREs</i>-associated genes through attenuating the binding of ERα. Taken together, these findings shed light on our understanding of the epigenetic mechanisms underlying the enhancer reprogramming during breast cancer pathogenesis.
DOI: 10.6084/m9.figshare.25188839
title: 20240209_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.25188839.v1
title: 20240209_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.21582770
title: Additional file 2 of Cost-effectively dissecting the genetic architecture of complex wool traits in rabbits by low-coverage sequencing

description: Additional file 2: Table S1. Genotype accuracy and concordance of imputation obtained with the three pipelines on 15 individuals. Table S2. Genotype accuracy and concordance of imputation by the three pipelines with the MAF ranges. Table S3. Genotype accuracy and concordance of imputation with different sample size and depth by BaseVar + STITCH. Table S4. Variant analysis by regions and functions. Table S5. LD decay in the Angora rabbit population. Table S6. Genes located in the selected regions in the Angora rabbit population. Table S7. Enrichment of genes located in the selected regions in the Angora rabbit population. Table S8. LD decay in the Angora and wild rabbit populations. Table S9. Genes located in the selected regions between Angora and wild rabbits. Table S10. Enrichment of genes located in the selected regions between Angora and wild rabbits. Table S11. Genes located in the common regions between within-breed and cross-breed signatures of selection. Table S12. Enrichment of genes located in the common regions between within-breed and cross-breed signatures of selection. Table S13. Significant SNPs for DFW. Table S14. Significant SNPs for CVDFW. Table S15. Significant SNPs for LFW. Table S16. Significant SNPs for BW. Table S17. SNP-based heritability. Table S18. QTL contribution to phenotypic variance. Table S19. Genes overlapping with by QTL.
DOI: 10.6084/m9.figshare.14766984
title: Additional file 1 of Identification of prognostic markers for hepatocellular carcinoma based on the epithelial-mesenchymal transition-related gene BIRC5

description: Additional file 1.
DOI: 10.6084/m9.figshare.14766990.v1
title: Additional file 3 of Identification of prognostic markers for hepatocellular carcinoma based on the epithelial-mesenchymal transition-related gene BIRC5

description: Additional file 3.
DOI: 10.6084/m9.figshare.21582646
title: Additional file 1 of A two-step process for in silico screening to assess the performance of qRTPCR kits against variant strains of SARS-CoV-2

description: Additional file 1.
DOI: 10.25549/usctheses-ouc1355712
title: On the move and in the moment: community formation, identity, and opportunity in South central Los Angeles, 1945-2008
DOI: 10.25549/usctheses-ouc1360546
title: Final Dissertation Assembly Revised for Thesis Editors
DOI: 10.25549/usctheses-ouc1347029
title: ()
DOI: 10.25549/usctheses-ouc1362937
title: Microsoft Word - $ASQ111440_supp_undefined_BA0AA86A-D11A-11E0-B6B3-961F3012225A.doc
DOI: 10.25549/usctheses-ouc1345551
title: Microsoft Word - USC_Xiaoxia_PhDThesis_V2
DOI: 10.25549/usctheses-ouc1355914
title: EFFECT OF FOCAL PRESSURE ON THE RETINA AND THE DEVELOPMENT OF
DOI: 10.25549/usctheses-ouc1367689
title: Reimann Master_thesis_revised
DOI: 10.25549/usctheses-ouc1348788
title: Microsoft Word - $ASQ117615_supp_undefined_04B12AF4-0287-11E1-A6A4-3DFF9D1A67F9.docx
DOI: 10.6084/m9.figshare.14766987
title: Additional file 2 of Identification of prognostic markers for hepatocellular carcinoma based on the epithelial-mesenchymal transition-related gene BIRC5

description: Additional file 2.
DOI: 10.25549/usctheses-ouc1347130
title: Microsoft Word - Padoongpatt_TitlePage.docx
DOI: 10.25549/usctheses-ouc1360745
title: Microsoft Word - Jong_In_Kim_DMA_Dissertation VER3.doc
DOI: 10.25549/usctheses-ouc1356116
title: Microsoft Word - Dissertation_Aug_2011_03