cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7924634.v1
title: Online Resource 1 _ Sample List.xlsx

description: Online Resource 1. List of samples used in the study, their location, corresponding environmental characteristics and use in analysis.TOC: Total Organic Carbon; TN:Total Nitrogen; TP: Total Phosphorus; C/N: Carbon to Nitrogen ratio; WWTP: Waste Water Treatment Plant Index; TEI: Tidal Exposure Index; SWLI: Standardized Water Level index, PCA: Principal Component Analysis; MRT: Multivariate Regression Tree; MRPP: Multiresponse Permutation Procedure; LDA: Linear Discriminant Analysis; ISA: Indicator Species Analysis; SWLI TF: SWLI transfer function; TEI TF: TEI transfer function; TN transfer function.<br>
DOI: 10.6084/m9.figshare.7924424
title: gVCF_NA19102

description: 1000 Genomes gVCF mapped to hs37d5 for NA19102. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924430.v1
title: gVCF_HG03742

description: 1000 Genomes gVCF mapped to hs37d5 for HG03742. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924628.v1
title: Online Resource 3_Diatom count data.xlsx

description: Online Resource 3A. Diatom count data.Online Resource 3B. Percentage of livediatom cells in transect dataset<br>Online Resource 3C. Live vs permanent slide diatom count data in six mudflat samples.<br>
DOI: 10.6084/m9.figshare.7924361
title: Biplot approach with self-incompatibility analyses of sib diallel cross data for <i>Lysimachia monelli</i> (Primulaceae)

description: The biplot is a diagnostic tool used to make a visual appraisal of large data matrices with double entries. It has been most commonly used in crop breeding to evaluate genotype × environment interactions. We have employed the biplot method to study the self- and cross-compatibility reactions as evinced by diallel crosses for full-sib progeny arrays in <i>Lysimachia</i> (<i>Anagallis</i>) <i>monelli</i>, a species that has been shown to have single locus, multiallelic self-incompatibility, homomorphic gametophytic type (GSI). The resultant plots show two and three major groups (inter-compatible, intra-incompatible). In all diallel biplots, the high proportion of the total variation explained by two principal components (PC1 and PC2) indicates one-locus SI. Two to four compatible/incompatible clusters found in the analyzed diallels is in accord with a GSI type. More interestingly, the biplots also showed varying degrees of interaction between plants as females (pollen receiving) and plants as males (pollen donors) in the data from two diallels. The biplot method offers an alternative approach to study the genetic control of self-incompatibility via diallel crosses, and we propose that it might be particularly useful to study complex self-incompatibility systems in which conventional methods for the analysis of sib diallel results have proven difficult.
DOI: 10.6084/m9.figshare.7924421
title: gVCF_HG02052

description: 1000 Genomes gVCF mapped to hs37d5 for HG02052. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924421.v1
title: gVCF_HG02052

description: 1000 Genomes gVCF mapped to hs37d5 for HG02052. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924424.v1
title: gVCF_NA19102

description: 1000 Genomes gVCF mapped to hs37d5 for NA19102. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924358
title: gVCF_HG03741

description: 1000 Genomes gVCF mapped to hs37d5 for HG03741. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924361.v1
title: Biplot approach with self-incompatibility analyses of sib diallel cross data for <i>Lysimachia monelli</i> (Primulaceae)

description: The biplot is a diagnostic tool used to make a visual appraisal of large data matrices with double entries. It has been most commonly used in crop breeding to evaluate genotype × environment interactions. We have employed the biplot method to study the self- and cross-compatibility reactions as evinced by diallel crosses for full-sib progeny arrays in <i>Lysimachia</i> (<i>Anagallis</i>) <i>monelli</i>, a species that has been shown to have single locus, multiallelic self-incompatibility, homomorphic gametophytic type (GSI). The resultant plots show two and three major groups (inter-compatible, intra-incompatible). In all diallel biplots, the high proportion of the total variation explained by two principal components (PC1 and PC2) indicates one-locus SI. Two to four compatible/incompatible clusters found in the analyzed diallels is in accord with a GSI type. More interestingly, the biplots also showed varying degrees of interaction between plants as females (pollen receiving) and plants as males (pollen donors) in the data from two diallels. The biplot method offers an alternative approach to study the genetic control of self-incompatibility via diallel crosses, and we propose that it might be particularly useful to study complex self-incompatibility systems in which conventional methods for the analysis of sib diallel results have proven difficult.
DOI: 10.6084/m9.figshare.7924346
title: gVCF_HG02051

description: 1000 Genomes gVCF mapped to hs37d5 for HG02051. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924346.v1
title: gVCF_HG02051

description: 1000 Genomes gVCF mapped to hs37d5 for HG02051. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924358.v1
title: gVCF_HG03741

description: 1000 Genomes gVCF mapped to hs37d5 for HG03741. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924340
title: gVCF_NA19099

description: 1000 Genomes gVCF mapped to hs37d5 for NA19099. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924340.v1
title: gVCF_NA19099

description: 1000 Genomes gVCF mapped to hs37d5 for NA19099. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924337
title: Predicting session-by-session outcomes with the Consultation Interaction Coding Scheme in Cognitive Behaviour Therapy for Severe Health Anxiety

description: This is the SPSS 24 dataset and the SPSS syntax used for the analysis. The syntax files provides guidance notes for each stage of analysis.<br>In a secondary analysis of trial data, two trained raters blind to outcome used audio-visual recordings and transcripts to rate each interaction in the first and second session of cognitive behaviour therapy amongst 50 high service utilisers with severe health anxiety. The Consultation Interaction Coding Scheme (CICS) was used to rate each interaction on the basis of patient activation – a person’s confidence and perceived ability to manage their own health. Sessions were also assessed using the observer-rated working alliance inventory (WAI-O). Multilevel modelling was used to estimate the predictive validity of CICS and WAI-O scores on wellbeing assessed session-by-session using the Outcome Rating Scale.<br>
DOI: 10.6084/m9.figshare.7924337.v1
title: Predicting session-by-session outcomes with the Consultation Interaction Coding Scheme in Cognitive Behaviour Therapy for Severe Health Anxiety

description: This is the SPSS 24 dataset and the SPSS syntax used for the analysis. The syntax files provides guidance notes for each stage of analysis.<br>In a secondary analysis of trial data, two trained raters blind to outcome used audio-visual recordings and transcripts to rate each interaction in the first and second session of cognitive behaviour therapy amongst 50 high service utilisers with severe health anxiety. The Consultation Interaction Coding Scheme (CICS) was used to rate each interaction on the basis of patient activation – a person’s confidence and perceived ability to manage their own health. Sessions were also assessed using the observer-rated working alliance inventory (WAI-O). Multilevel modelling was used to estimate the predictive validity of CICS and WAI-O scores on wellbeing assessed session-by-session using the Outcome Rating Scale.<br>
DOI: 10.6084/m9.figshare.7924100
title: gVCF_HG03740

description: 1000 Genomes gVCF mapped to hs37d5 for HG03740. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924091
title: gVCF_HG02050

description: 1000 Genomes gVCF mapped to hs37d5 for HG02050. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924100.v1
title: gVCF_HG03740

description: 1000 Genomes gVCF mapped to hs37d5 for HG03740. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924082
title: gVCF_NA19098

description: 1000 Genomes gVCF mapped to hs37d5 for NA19098. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924082.v1
title: gVCF_NA19098

description: 1000 Genomes gVCF mapped to hs37d5 for NA19098. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924046
title: gVCF_HG03738

description: 1000 Genomes gVCF mapped to hs37d5 for HG03738. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924010
title: gVCF_NA19096

description: 1000 Genomes gVCF mapped to hs37d5 for NA19096. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924010.v1
title: gVCF_NA19096

description: 1000 Genomes gVCF mapped to hs37d5 for NA19096. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7924007
title: gVCF_HG02049

description: 1000 Genomes gVCF mapped to hs37d5 for HG02049. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7923989
title: gVCF_HG03736

description: 1000 Genomes gVCF mapped to hs37d5 for HG03736. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7923989.v1
title: gVCF_HG03736

description: 1000 Genomes gVCF mapped to hs37d5 for HG03736. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7923953
title: gVCF_NA19095

description: 1000 Genomes gVCF mapped to hs37d5 for NA19095. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7923953.v1
title: gVCF_NA19095

description: 1000 Genomes gVCF mapped to hs37d5 for NA19095. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7923947
title: gVCF_HG02048

description: 1000 Genomes gVCF mapped to hs37d5 for HG02048. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7923947.v1
title: gVCF_HG02048

description: 1000 Genomes gVCF mapped to hs37d5 for HG02048. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7923890
title: gVCF_HG03733

description: 1000 Genomes gVCF mapped to hs37d5 for HG03733. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7923905
title: A DNA barcode reference library of the French Polynesian shore fishes

description: <b>Dataset for "A DNA barcode reference library of the French Polynesian shore fishes."</b><b><br></b>Neighbour-joining tree of 2190 COI barcodes belonging to the 540 coral reef fish species (NJ tree_22 ajn2019.pdf)&Complete collection data (DataSpreadsheet_23Jan2019.xlsx)&Photographs of all voucher specimens in collection<br>
DOI: 10.17028/rd.lboro.7923944.v1
title: ‘Towards a New Sociology of the Text: The Concept of the Author in the Digital Age’ Focus Group Transcriptions

description: The complete (selective) transcriptions of a series of reader response focus groups entitled 'Towards a New Sociology of the Text: The concept of the Author in the Digital Age'. A copy of the demographics survey for these focus groups is available at https://doi.org/10.17028/rd.lboro.7923755.<br>32 participants were asked to discuss a computer-generated news article with one another in focus groups ranging from 3 to 5 participants.<br>These transcriptions were produced as part of a doctoral research project to discern the social and literary implications of natural language generation and computer-generated texts.<br>Prior to beginning the questionnaire, participants agreed that 'I understand that anonymised quotes may be used in publications, reports, web pages, and other research outputs.' Participants were informed that '[t]he [focus group] results will be submitted to Loughborough University as part of a PhD thesis and disseminated via relevant academic/popular publications and/or conferences.'
DOI: 10.6084/m9.figshare.7923863
title: gVCF_NA19093

description: 1000 Genomes gVCF mapped to hs37d5 for NA19093. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17028/rd.lboro.7923944.v3
title: ‘Towards a New Sociology of the Text: The Concept of the Author in the Digital Age’ Focus Group Transcriptions

description: The complete (selective) transcriptions of a series of reader response focus groups entitled 'Towards a New Sociology of the Text: The concept of the Author in the Digital Age'. A copy of the demographics survey for these focus groups is available at https://doi.org/10.17028/rd.lboro.7923755.<br>32 participants were asked to discuss a computer-generated news article with one another in focus groups ranging from 3 to 5 participants.<br>These transcriptions were produced as part of a doctoral research project to discern the social and literary implications of natural language generation and computer-generated texts.<br>Prior to beginning the questionnaire, participants agreed that 'I understand that anonymised quotes may be used in publications, reports, web pages, and other research outputs.' Participants were informed that '[t]he [focus group] results will be submitted to Loughborough University as part of a PhD thesis and disseminated via relevant academic/popular publications and/or conferences.'
DOI: 10.6084/m9.figshare.7923890.v1
title: gVCF_HG03733

description: 1000 Genomes gVCF mapped to hs37d5 for HG03733. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17028/rd.lboro.7923830
title: 'Towards a New Sociology of the Text: The Concept of the Author in the Digital Age' Coded 'Author' Word Associations

description: The coded results of an 'author' word association exercises included in an online reader response questionnaire entitled 'Towards a New Sociology of the Text: The concept of the Author in the Digital Age'. A copy of the questionnaire and its raw results is available at https://doi.org/10.17028/rd.lboro.7447352.v1.<br>500 participants were asked to 'List three things that come to mind when you think of the word "author". Results were according according to 'author' as: (a) identity; (b) connotations; (c) output; and (d) process.<br>This dataset was amassed as part of a doctoral research project to discern the social and literary implications of natural language generation and computer-generated texts.<br>Prior to beginning the questionnaire, participants agreed that 'I understand that anonymised quotes may be used in publications, reports, web pages, and other research outputs.' Participants were informed that '[t]he [questionnaire] results will be submitted to Loughborough University as part of a PhD thesis and disseminated via relevant academic/popular publications and/or conferences.'
DOI: 10.6084/m9.figshare.7923863.v1
title: gVCF_NA19093

description: 1000 Genomes gVCF mapped to hs37d5 for NA19093. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17028/rd.lboro.7923944.v2
title: ‘Towards a New Sociology of the Text: The Concept of the Author in the Digital Age’ Focus Group Transcriptions

description: The complete (selective) transcriptions of a series of reader response focus groups entitled 'Towards a New Sociology of the Text: The concept of the Author in the Digital Age'. A copy of the demographics survey for these focus groups is available at https://doi.org/10.17028/rd.lboro.7923755.<br>32 participants were asked to discuss a computer-generated news article with one another in focus groups ranging from 3 to 5 participants.<br>These transcriptions were produced as part of a doctoral research project to discern the social and literary implications of natural language generation and computer-generated texts.<br>Prior to beginning the questionnaire, participants agreed that 'I understand that anonymised quotes may be used in publications, reports, web pages, and other research outputs.' Participants were informed that '[t]he [focus group] results will be submitted to Loughborough University as part of a PhD thesis and disseminated via relevant academic/popular publications and/or conferences.'
DOI: 10.6084/m9.figshare.7923815
title: gVCF_HG02047

description: 1000 Genomes gVCF mapped to hs37d5 for HG02047. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7923815.v1
title: gVCF_HG02047

description: 1000 Genomes gVCF mapped to hs37d5 for HG02047. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7923806
title: Untitled ItemG1/S transition with mutant p53 as prognostic indicators and therapeutic targets for hepatocellular carcinoma

description: <b>Objectives: </b>The traditional pathologic and histologic diagnosis is very effective for cancer prognostic prediction,such as lung cancer and colorectal cancer. However, for hepatocellular carcinoma (HCC), the second-deadliest cancer, the effects are very limit. <b>Materials and Methods:</b><b> </b>To identify novel biomarkers for outcome prediction and therapeutic targets, we compared the global gene expression of primary HCC samples between long-term survivors (LTSs) and short-term survivors (STSs) in TCGA database. We also explored the association between <i>TP53</i> mutational and patients’ prognosis. Finally, we validated the identified novel molecular biomarkers with databases and experiments. <b>Results: </b>Genes involved in cell cycle were upregulated significantly in STS HCC tissues. The high expressions of eight positive regulators of G<sub>1</sub>/S cell cycle transition were closely associated with patients’ poor prognosis. In addition, patients with <i>TP53</i> mutations, usually with highly expressing cell cycle genes, exhibited STSs. Meanwhile, we identified that patients with both mutant <i>TP53</i> and high expression of five positive regulators of G<sub>1</sub>/S cell cycle transition exhibited a poor survival probability. Finally, we demonstrated that palbociclib significantly inhibited the cell proliferation of HCC cells with p53 mutation. <b>Conclusions: </b>The expression of five positive regulators of G<sub>1</sub>/S transition with TP53 mutation are promising prognostic molecular biomarkers for STSs HCC patients and these people are the potential target patients of a rationale <i>CDK4/6</i> inhibitor therapy.
DOI: 10.6084/m9.figshare.7923806.v1
title: Untitled ItemG1/S transition with mutant p53 as prognostic indicators and therapeutic targets for hepatocellular carcinoma

description: <b>Objectives: </b>The traditional pathologic and histologic diagnosis is very effective for cancer prognostic prediction,such as lung cancer and colorectal cancer. However, for hepatocellular carcinoma (HCC), the second-deadliest cancer, the effects are very limit. <b>Materials and Methods:</b><b> </b>To identify novel biomarkers for outcome prediction and therapeutic targets, we compared the global gene expression of primary HCC samples between long-term survivors (LTSs) and short-term survivors (STSs) in TCGA database. We also explored the association between <i>TP53</i> mutational and patients’ prognosis. Finally, we validated the identified novel molecular biomarkers with databases and experiments. <b>Results: </b>Genes involved in cell cycle were upregulated significantly in STS HCC tissues. The high expressions of eight positive regulators of G<sub>1</sub>/S cell cycle transition were closely associated with patients’ poor prognosis. In addition, patients with <i>TP53</i> mutations, usually with highly expressing cell cycle genes, exhibited STSs. Meanwhile, we identified that patients with both mutant <i>TP53</i> and high expression of five positive regulators of G<sub>1</sub>/S cell cycle transition exhibited a poor survival probability. Finally, we demonstrated that palbociclib significantly inhibited the cell proliferation of HCC cells with p53 mutation. <b>Conclusions: </b>The expression of five positive regulators of G<sub>1</sub>/S transition with TP53 mutation are promising prognostic molecular biomarkers for STSs HCC patients and these people are the potential target patients of a rationale <i>CDK4/6</i> inhibitor therapy.
DOI: 10.6084/m9.figshare.7923761
title: gVCF_HG03731

description: 1000 Genomes gVCF mapped to hs37d5 for HG03731. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17028/rd.lboro.7923755
title: 'Towards a New Sociology of the Text: The Concept of the Author in the Digital Age' Focus Group Demographics Survey

description: The demographics survey required by prospective participants of a series of reader response focus groups entitled 'Towards a New Sociology of the Text: The concept of the Author in the Digital Age'.<br>32 participants were asked to discuss a computer-generated news article with one another in focus groups ranging from 3 to 5 participants.<br>
DOI: 10.6084/m9.figshare.7923752
title: gVCF_NA19092

description: 1000 Genomes gVCF mapped to hs37d5 for NA19092. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7923761.v1
title: gVCF_HG03731

description: 1000 Genomes gVCF mapped to hs37d5 for HG03731. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17028/rd.lboro.7923755.v1
title: 'Towards a New Sociology of the Text: The Concept of the Author in the Digital Age' Focus Group Demographics Survey

description: The demographics survey required by prospective participants of a series of reader response focus groups entitled 'Towards a New Sociology of the Text: The concept of the Author in the Digital Age'.<br>32 participants were asked to discuss a computer-generated news article with one another in focus groups ranging from 3 to 5 participants.<br>
DOI: 10.6084/m9.figshare.7923752.v1
title: gVCF_NA19092

description: 1000 Genomes gVCF mapped to hs37d5 for NA19092. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7923734
title: SI: Radical Stabilization Energies for Enzyme Engineering – Tackling the Substrate Scope of the Radical Enzyme QueE: Docking

description: Docked pdb structures as listed in publication
DOI: 10.6084/m9.figshare.7923734.v1
title: SI: Radical Stabilization Energies for Enzyme Engineering – Tackling the Substrate Scope of the Radical Enzyme QueE: Docking

description: Docked pdb structures as listed in publication
DOI: 10.6084/m9.figshare.7923671
title: gVCF_HG02046

description: 1000 Genomes gVCF mapped to hs37d5 for HG02046. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7923656
title: gVCF_NA19091

description: 1000 Genomes gVCF mapped to hs37d5 for NA19091. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7923671.v1
title: gVCF_HG02046

description: 1000 Genomes gVCF mapped to hs37d5 for HG02046. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.7923659
title: SI: Radical Stabilization Energies for Enzyme Engineering – Tackling the Substrate Scope of the Radical Enzyme QueE: QM input and outputs

description: QM calculation structures and output files for RSE calculations of alternative substrates as listed in publication<br>(Gaussian outputs are truncated by time information to be in compliance with the company's restrictions on sharing calculation data)