cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/32gr2rxwjh
title: Supplementary materials of the article: "Adapting GPT-4V for Color Blindness in Dermatology", Wang et al.

description: Supplementary materials of the article: "Adapting GPT-4V for Color Blindness in Dermatology" - Version 4
DOI: 10.6084/m9.figshare.7398539.v1
title: Supplementary Material for: Peiminine Inhibits Glioblastoma in Vitro and in Vivo Through Cell Cycle Arrest and Autophagic Flux Blocking

description: <b><i>Background/Aims:</i></b> Glioblastoma multiforme (GBM) is the most devastating and widespread primary central nervous system tumour in adults, with poor survival rate and high mortality rates. Existing treatments do not provide substantial benefits to patients; therefore, novel treatment strategies are required. Peiminine, a natural bioactive compound extracted from the traditional Chinese medicine Fritillaria thunbergii, has many pharmacological effects, especially anticancer activities. However, its anticancer effects on GBM and the underlying mechanism have not been demonstrated. This study was conducted to investigate the potential antitumour effects of peiminine in human GBM cells and to explore the related molecular signalling mechanisms<i> in vitro</i> and <i>in vivo</i> <b><i>Methods:</i></b> Cell viability and proliferation were detected with MTT and colony formation assays. Morphological changes associated with autophagy were assessed by transmission electron microscopy (TEM). The cell cycle rate was measured by flow cytometry. To detect changes in related genes and signalling pathways <i>in vitro</i> and <i>in vivo</i>, RNA-seq, Western blotting and immunohistochemical analyses were employed.<b><i> Results:</i></b> Peiminine significantly inhibited the proliferation and colony formation of GBM cells and resulted in changes in many tumour-related genes and transcriptional products. The potential anti-GBM role of peiminine might involve cell cycle arrest and autophagic flux blocking via changes in expression of the cyclin D1/CDK network, p62 and LC3. Changes in Changes in flow cytometry results and TEM findings were also observed. Molecular alterations included downregulation of the expression of not only phospho-Akt and phospho-GSK3β but also phospho-AMPK and phospho-ULK1. Furthermore, overexpression of AKT and inhibition of AKT reversed and augmented peiminine-induced cell cycle arrest in GBM cells, respectively. The cellular activation of AMPK reversed the changes in the levels of protein markers of autophagic flux. These results demonstrated that peiminine mediates cell cycle arrest by suppressing AktGSk3β signalling and blocks autophagic flux by depressing AMPK-ULK1 signalling in GBM cells. Finally, peiminine inhibited the growth of U251 gliomas <i>in vivo</i>.<b><i></i></b> <b><i>Conclusion:</i></b> Peiminine inhibits glioblastoma <i>in vitro</i> and <i>in vivo</i> via arresting the cell cycle and blocking autophagic flux, suggesting new avenues for GBM therapy.
DOI: 10.17632/7rvkp3hdct
title: Data for Chen et al "Effect of water on fracture mechanical properties of shales"

description: Experimental data from double torsion fracture mechanics testing of shales under environments of varying water content: dry CO2 gas, ambient air, and water saturated. This data includes KV curves, fracture toughness, and subcritical fracture growth index values.
DOI: 10.6084/m9.figshare.16589744.v1
title: Biome effect on phenotypic and genomic differences in the South America marsh rats

description: Scripts and input files used in the paper submitted to the Biological Journal of the Linnean Society:<br>Prado et al. 2021. Biome effect on phenotypic and genomic differences in the South America marsh rats.<br>(1) Niche Similarity<br>Environmental variables can be download from WorldClim (Hijmans et al., 2005) and ENVIREM (Title & Bemmels, 2018).<br>1-Select&Edit_env_variables.R: Select and edit environmental variables for reduction of environmental self-correlation<br>2-Rarefy_points.R: Filter occurrence points for reduction of spatial self-correlation<br>3-ModelComplexity.R: Select the best parameter combination to achieve a balance between goodness‐of‐fit and model complexity<br>4-Cut_model_by_threshold.R: Construct binary maps based on maxent's threshold<br>5-Niche_Similarity.R: Characterize the ecological niche similarity applying two different approaches: (1) the multivariate environmental niche overlap quantified with the ‘PCA-env’ (Broennimann et al., 2012), and (2) the estimation of n-dimensional environmental hypervolume (Hutchinson, 1957; Blonder et al., 2014).<br>(2) Genomic Structure and Bioinformatics<br>6-Create_whitelist_stacks2e.R: Create a whitelist to remove SNP’s positioned at the end of all loci due to an artificially increased number of SNPs observed at these last positions. Also, it removes loci with high theta values (above the 95 percentiles), given these are suggestive of sequencing and assembly errors.<br>7-sumstat.R: Check the genetic diversity summary statistics for significant differences, and plots their means values and standard errors.<br>8-Pop_structure.R: Perform Principal Component Analysis (PCA), Tracy-Widom test, and Mantel test<br>9-moving&best_lhood.R: Move files among folders to facilitate Fastsimcoal analysis<br>(3) Morphometric Structure<br>10-Morphometrics.R: Perform Normality tests, Principal Component Analysis (PCA), Discriminant Analysis, MANOVA, Student's t-test, Mann-Whitney t-test, Boxplots showing means values and standard errors of variables(4) Association between Environment, Genome, and Morphometry<br>11-dbRDA.R: Perfom Distance-based redundancy analyzes (dbRDA; Legendre & Anderson, 1999) to test for an association between environmental variables and genomic and morphometric distance with and without the effect of the geographic distance
DOI: 10.6084/m9.figshare.7150628.v1
title: FSA score

description: <pre>This figshare folder contains the essential material to compute FSA.</pre>
DOI: 10.17632/xhbn7djvwd
title: Supplementary Data for: Baggage dissociation for sustainable air travel: Design study of ground baggage distribution networks 

description: The file provides supplementary data for the numerical experiment of the paper: Baggage dissociation for sustainable air travel: Design study of ground baggage distribution networks, published at Transportation Research Interdisciplinary Perspectives.
DOI: 10.17632/dttdwzpxcy
title: Proporsi Penjualan Per Jenis Kain

description: Proporsi per jenis kain dari data penjualan harian
DOI: 10.6084/m9.figshare.17072672.v1
title: FMF_Calculator.xlsx

description: DOI 10.1371/journal.pone.0260964<br>
DOI: 10.6084/m9.figshare.24419008.v1
title: Cognitive Function Data

description: The Effects of Moringa oleifera Leaf Extract and Physical Activity on The Levels of Transforming Growth Factor-β, Caspase-3, and Cognitive Function in Geriatric Mice Model Background: This study aimed to assess the effects of Moringa oliefera (MO) leaf extract and physical activity on the levels of TGF-β, Caspace 3, and cognitive function in geriatric mice model. Methods: 30 mice were divided into five groups. The C1 group served as the negative control (given standardized food and water), while C2 was the positive control (treated with D-galactose 150 mg/kgBW/day intraperitoneally for eight weeks, followed by swimming for 30 minutes 2x/week four weeks). The T1, T2, and T3 treatment groups received D-galactose 150 mg/kgBW/day intraperitoneally for eight weeks and MO leaf extract through oral gavage at doses of 100, 200, and 400 mg/kg/day, respectively, along with a similar engagement in swimming sessions. At the end of the study, mice were assessed for cognitive function using the Y-maze test, then TGF-β and caspase-3 levels were measured. Results: The differences in TGF-β and caspase-3 levels between groups were statistically significant (p&lt;0.05). However, no significant differences were observed in the cognitive function of all groups (p&gt;0.05). Conclusions: MO leaf extract significantly influenced TGF-β and caspase-3 levels but did not affect the cognitive function of the geriatric mice model.
DOI: 10.17632/5d22g2fxcx
title: accelerated test

description: test results at sharif university towing tank
DOI: 10.17632/y9mwsnh72t
title: Solution of the Skyrme–Hartree–Fock–Bogolyubov equations in the Cartesian deformed harmonic-oscillator basis. (V) HFODD(v2.08k)

description: Abstract We describe the new version (v2.08k) of the code HFODD which solves the nuclear Skyrme–Hartree–Fock or Skyrme–Hartree–Fock–Bogolyubov problem by using the Cartesian deformed harmonic-oscillator basis. Similarly as in the previous version (v2.08i), all symmetries can be broken, which allows for calculations with angular frequency and angular momentum tilted with respect to the mass distribution. In the new version, three minor errors have been corrected. ... Title of program: HFODD; version. 2.08k Catalogue Id: ADFL_v2_1 [ADVA] Nature of problem The nuclear mean-field and an analysis of its symmetries in realistic cases are the main ingredients of a description of nuclear states. Within the Local Density Approximation, or for a zero-range velocity-dependent Skyrme interaction, the nuclear mean-field is local and velocity dependent. The locality allows for an effective and fast solution of the self-consistent Hartree-Fock equations, even for heavy nuclei, and for various nucleonic (n-particle n-hole) configurations, deformations, excitat ... Versions of this program held in the CPC repository in Mendeley Data ADFL_v1_0; HFODD (v1.60r); 10.1016/S0010-4655(97)00005-2 ADFL_v1_1; HFODD (v1.75r); 10.1016/S0010-4655(00)00121-1 ADFL_v2_0; HFODD (v2.08j); 10.1016/j.cpc.2004.02.003 ADFL_v2_1; HFODD; version. 2.08k; 10.1016/j.cpc.2005.01.014 ADFL_v2_2; HFODD (v2.40h); 10.1016/j.cpc.2009.08.009 ADFL_v3_0; hfodd (v2.49t); 10.1016/j.cpc.2011.08.013 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.21443262.v1
title: Dataset for manuscript "Paleo-Pacific plate subduction and basement mobilization triggered large-scale formation of Mesozoic gold deposits in the northern margin of the North China Craton"

description: The northern margin of the North China Craton (NNCC) hosts Mesozoic gold deposits of significant economic importance. The metal sources of these gold systems have long been debated with mainly magmatic-hydrothermal versus orogenic models. Mercury (Hg) isotopes, which undergo unique mass-independent fractionation, can provide important insights into the source of metals in gold deposits due to the close association between Hg and Au in such systems. Here we investigated the Hg isotopic composition of six gold deposits of Middle Jurassic to Lower Cretaceous age and potential source rocks in the NNCC. Variable ∆199Hg values were observed in bulk ore and pyrite samples (-0.28 to 0.34‰, n=51) and coeval granites (-0.21 to 0.13‰; n=25). The negative ∆199Hg values of these samples mostly agree with that observed for metamorphic basement rocks (-0.37 to 0.11‰; n=32). The positive values of these samples agree with that reported in marine sediments (0 to 0.3‰). So the data suggest binary mixing of ocean-recycled Hg from the subducted slab or the metasomatized mantle, and terrestrial-recycled Hg from the Precambrian basement, in Mesozoic gold deposits. The contribution of Hg (and Au, by analogy) from both reservoirs varies dependent on arc versus intracontinental setting and is ultimately controlled by Paleo-Pacific plate subduction and basement mobilization during Mesozoic granite magmatism.
DOI: 10.17632/pvpd7ftfp6
title: Design of defected TaN supercells dataset

description: Five kinds of supercells which contain point-defects (metal and nitrogen vacancies) are designed to simulate by DFT calculations the configurationnel effects of defects distribution (perfectly ordered, symmetric, clusters and random vacancies) within the lattice, on the structural and elastic properties of defected cubic and non-cubic TaxN y. Same number of metal and nitrogen randomly distributed mimic the random distribution of Schottky defects. The POSCAR files are provided for different defects concentration (removing 1, 2, 3 ..., 12 atoms). "Random" distribution of defects on the metal and nitrogen sites has been obtained by ATAT Monte Carlo calculations within teh Special quasi-random structure method (SQS), while for “Perfectly ordered” structures were found by Cluster Expansion method to have the lowest energies within the interested concentration range. Although they have higher symmetry compared to SQS, it is better to name them specifically as "CE ground state (ordered) structures" to distinguish them from the symmetric ones that were generated manually as for the clusters ones. For the "symmetric case", we considered ordered distribution of vacancies (denoted as “symmetric” configuration) by removing atoms with certain site symmetries from the 2×2×2 supercell. Hence, in the symmetric configurations, all the defected structures remain cubic. The vacancies in “symmetric” configurations are not randomly distributed as in SQS. They are created in a symmetric manner referring to the 4-fold rotational symmetry in cubic lattice . The configurations are generated progressively by removing an atom from the 2×2×2 supercell by one of the following manners, (i) 1 cubic center atom (1 V), (ii) i+ 1 vertex of the cubic (2 V), (iii) 3 face centers (3 V), (iv) i+iii (4 V), (v) i+ii+iii (5 V), (vi) iii+ 3 edge centers (6 V), (vii) vi+i (7 V), (vii) vi+ii (8 V). Note that the structure has still cubic symmetry (equal in 3 directions) after vacancies creation for each step. In the case of "clusters" configurations, the vacancies are manually created by removing adjacent Ta or N atoms, respectively for clustered Ta or N vacancies. For example, a N(0) atom has 12 neighboring N(1-12) atoms, we first remove one N(0), then a neighboring N(1) of this first N(0), then a second neighboring N(2), ... The vacancies form a cluster in such a way. It is the same methodology for Ta atoms.
DOI: 10.17632/5bghs44nnb
title: Investigation of the applicability of adult definitions of disease severity for psoriasis in a pediatric cohort: a prospective registry study

description: Supplemental material belonging to the JAAD publication: 'Investigation of the applicability of adult definitions of disease severity for psoriasis in a pediatric cohort: a prospective registry study', published in the Journal of the American Academy of Dermatology (JAAD), 2025. 

Mendeley Supplemental Methods 
Mendeley Supplemental Table 1. Total number of pediatric psoriasis patients, number of patients meeting R10 definition and number of patients meeting IPCcs definition
Mendeley Supplemental Table 2. Clinical characteristics of patients meeting the IPC Consensus Statement (IPCcs) definition, with consideration of scalp psoriasis thresholds (&gt;5%, &gt;10%, &gt;20% and &gt;50%)
Mendeley Supplemental Table 3. Influence of clinical characteristics on CDLQI with PASI as severity measure: univariable and multivariable logistic regression model
DOI: 10.6084/m9.figshare.23535303.v1
title: TCSF final results

description: Final contigs manually selected from preliminary TCSF results, these contigs were used for further circularization.
DOI: 10.6084/m9.figshare.19529995.v1
title: A Survey on Sustainable Software Ecosystems to Support Experimental and Observational Science at Oak Ridge National Laboratory

description: This archive contains the survey data underlying the paper (official citation to be added when available):<br>David E Bernholdt, Mathieu Doucet, William F Godoy, Addi Malviya-Thakur, and Gregory R Watson, A Survey on Sustainable Software Ecosystems to Support Experimental and Observational Science at Oak Ridge National Laboratory, in International Conference on Computational Science, thematic track 2022 International Workshop on Software Engineering for Computational Science,London, United Kingdom, June 2022.
DOI: 10.17632/scstz8k9w2
title: INFLUENCE OF PRE-FERMENTAL PROCESSING ON BIOLOGICALLY ACTIVE COMPOUNDS AND ANTIOXIDANT PROPERTIES OF SOME BERRIES

description: At present, due to the current environmental situation in the Republic of Azerbaijan and in the
world, great importance is given to the problem of healthy nutrition of the population. A possible
and rational way to increase the biological value of food is currently its fortification due to
natural plant extracts of berries that grow in the forests of Azerbaijan. Due to the lack of data on
the effectiveness of preliminary methods, including enzymatic processing of these berries, this
work was carried out. When performing the work, standard and special research methods were
used. It has been established that there is a tendency to increase the content of phenolic
substances in extracts of various berries with pre-treatment with enzyme preparations from 1.08
times (cornel, Pectinex BE XXL) to 1.46 times (kinkan, Sellolyuks-A) compared with control
samples. The content of flavonoids in all analyzed extracts increases from 1.29 times (kinkan,
Pectinex BE XXL) to 1.68 times (common cranberry, Amylase AG 300 L. The content of
anthocyanins also increases in all analyzed samples from 1.07 times to 1.60 times, the exception
is the dogwood extract sample treated with Amylase AG 300 L. The restorative power of berry
extracts after the use of enzyme preparations increases 1.18-2.33 times, while the antioxidant
activity of berry extracts tends to decrease, with the exception of hawthorn berries and common
cranberries. studies show the feasibility of pre-treatment of the pulp of these berries
DOI: 10.17632/hvjvd4g736
title: Journal of Studies in Islam and Psychology; No. 13

description: The main objective of Studies in Islam and Psychology is to provide an intellectual platform for national and international researchers to discuss their most recent findings related to Islamic psychology and counseling. By doing so, the journal hopes to improve the status of the field in Iran and in the world and to find solutions to theoretical and practical problems the profession is faced with. To serve this purpose, researchers are encouraged to submit their unpublished, original, full-length papers for potential publication in the journal. 

The journal is set to publish original articles on a wide range of issues including;

 The philosophy of psychology with a critical outlook from the perspective of Islam;
 The uses of psychology in the service of the Islamic society and its needs;
 The formation of psychology in the Islamic society;
 Psychological analysis of Islamic concepts in areas such as:
 1. Anthropology, such as: banned, impatience, hasty, captious, pious, faithful;
 2. Belief, such as: God, resurrection, Imamate, intercession, Paradise, Hell and ...;
 3. Value, such as: repentance, trust, self-esteem, mental relaxation, grief, fear;
 4. Practical instructions of Islam, such as: qisas (retaliation), prayers, inheritance, hajj, khums (one fifth);
 Study of psychological findings from Islamic perspective in terms of critique, confirmation and completion, alternative presentation, presentation of new theory;

To let individual researchers and libraries have access to the most recent research findings in the field, the journal allows open-access to its articles. This journal utilizes the Magiran and Noormags preservation systems to create a distributed archiving system for individual and libraries and to permit libraries stakeholders to create permanent archives of the journal.
DOI: 10.17632/m66wgvw7sm
title: RNA polymerase II transcription initiation in holo-TFIID-depleted mouse embryonic stem cells

description: Raw data for Western blots and cell counting associated to the following manuscript

Vincent Hisler, Paul Bardot, Dylane Detilleux, Andrea Bernardini, Matthieu Stierle, Emmanuel Garcia Sanchez, Claire Richard, Lynda Hadj Arab, Cynthia Ehrhard, Bastien Morlet, Yavor Hadzhiev, Matthieu Jung, Stéphanie Le Gras, Luc Négroni, Ferenc Müller, László Tora and Stéphane D. Vincent
RNA polymerase II transcription initiation in holo-TFIID-depleted mouse embryonic stem cells

In these study, we analyzed the impact of the conditional deletion of two genes coding for tow distinct TFIID subunits TAF7 and TAF10 in mouse embryonic stem cells. We investigated the impact of these deletions on TFIID assembly, TFIID chromatin binding and nascent transcription to evaluate the ability of partial TFIID complex to initiate RNA polymerase II transcription initiation.
DOI: 10.17632/2pf6p9gdxk
title: The response of salivary proinflammatory biomarkers to tooth extraction in type II diabetics

description: This study investigated the salivary proinflammatory cytokines in saliva of type II diabetic patients compared to non-diabetic patients at three times, before tooth extraction, two hours, and two days after tooth extraction.
DOI: 10.6084/m9.figshare.13849964.v2
title: Equity in Academia: Supporting Material collected through a workshop at Oxford University (September 2019)

description: These files comprise material collected through an 'Equity in Academia' workshop, convened by the Nuffield Department of Medicine at the University of Oxford in September 2019.<br>The pdf file 'EIA supplementary data' contains qualitative information collected from meeting delegates, before, during and after the workshop.<br>The jpeg files are visual representations of the day's events, summarising themes and discussions. Artwork produced by Alex Hughes at Drawnalism (https://drawnalism.com/), posted with permission.<br>The xls file contains a list of the consortium authorship list.
DOI: 10.6084/m9.figshare.28504373.v1
title: Supllementry file.pdf

description: Supplementry file
DOI: 10.17632/68vx62kspc
title: Evidence of second canal between permanent mandibular central and lateral incisors in China; a systematic review on CBCT studies

description: seiduts TCBC no weiver citametsys a ;anihC ni srosicni laretal dna lartnec ralubidnam tnenamrep neewteb lanac dnoces fo ecnedivE", weiver citametsys eht morf atad ehT
DOI: 10.17632/w8sgp3fy8s
title: Dataset from Soil N and dissolved organic matter chemodiversity: bacterial utilization of soil C and effects on N mineralization after six years of organic and inorganic fertilization

description: We hypothesized that: ⅰ) continuous application of chemical fertilizer and decomposed cow manure alone or in combination can alter soil DOM compositions and mediate strategies for bacterial utilization of soil carbon and, ⅱ) DOM composition and soil nitrogen vary in their relative contributions to nitrogen mineralization in this study. The data included soil organic carbon and total N in paddy soil from 2015 to 2020, alkaline-nitrogen, NO3-N and NH4-N in paddy soil in 2020, the molecular composition of the DOM in soil analyzed by FT-ICR-MS in 2020, bacteria composition in soil 2018 and 2020 under the treatments of organic and inorganic fertilization. We highlighted continuous decomposed cow manure application increased soil nitrogen and recalcitrant components of DOM that mediated the strategies for bacterial carbon utilization and affected the nitrogen mineralizaiton. Total-nitrogen (TN), alkaline-nitrogen (AN) and bacterial diversity played an important effect on nitrogen mineralization, as well as lipids presented a positively total effect on nitrogen mineralization stronger than protein/amino sugars. However, tannins, lignins, condensed aromatics, carbohydrates, and unsaturated hydrocarbons showed a negatively total effect on nitrogen mineralization.
DOI: 10.17632/gsc7ssgj33
title: Data for: Bioleaching of gold from waste printed circuit boards by alkali-tolerant Pseudomonas fluorescens

description: The data includes the changes of gold bioleaching efficiency under the conditions of different pH, different additions of bacteria, different pulp densities, different glycine concentration and different substrate. In addition, there are data on bacterial growth curves drawn using absorbance.
DOI: 10.17632/zs66zj3zzd
title: LINF_150013600

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)