cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15189760
title: BoneDat, a database of standardized bone morphology for in-sillico analyses

description: BoneDat is a comprehensive standardized human bone morphology dataset derived from 278 clinical lumbopelvic Computed Tomography (CT) scans. The cohort spans ages 16 to 91 years, is balanced by sex, and is categorized into ten age groups. The dataset provides meticulously curated morphological data on the pelvis, sacrum, and L4/L5 vertebrae.

The contents include:



Raw Data: Anonymized CT scans in NIfTI format (.nii.gz) and an accompanying table with subject metadata (unique ID, age at scan, sex) and Hounsfield Unit calibration values from reference tissues for potential retrospective Bone Mineral Density (BMD) estimation.

Segmentations: Multi-label segmentation masks (NIfTI format) delineating individual pelvic bones, the sacrum, and L4/L5 vertebrae, generated using the Biomedisa algorithm with manual refinement and expert validation. Trimmed CT scans corresponding to the masks are also provided.

Normalized Geometries: Volumetric meshes (*.vtk format) representing the spatially normalized geometry of each subject's lumbopelvic region. These were created by applying subject-specific deformation fields (obtained during registration) to a high-quality template mesh, followed by mesh relaxation.

Reference Templates: Average lumbopelvic morphology templates (NIfTI format) represent the entire cohort's mean shape generated using an iterative, unbiased template estimation algorithm (SyN ANTs).

Registration Data: Outputs from the multi-stage registration process (ANTs: rigid, affine, Symmetric Normalization - SyN), including rigidly aligned CT volumes, non-linearly warped CT volumes registered to the template space, affine transformation matrices (.mat), and non-linear deformation fields (.nii.gz or *.mat).


BoneDat provides a structured dataset of raw and processed lumbopelvic morphological data. Due to its substantial size, particularly the extensive registration outputs, the dataset is distributed across seven linked repositories:

BoneDat-part1: https://doi.org/10.5281/zenodo.15188359

BoneDat-part2: https://doi.org/10.5281/zenodo.15189451

BoneDat-part3: https://doi.org/10.5281/zenodo.15189455

BoneDat-part4: https://doi.org/10.5281/zenodo.15189459

BoneDat-part5: https://doi.org/10.5281/zenodo.15189469

BoneDat-part6: https://doi.org/10.5281/zenodo.15189474

BoneDat-part7: https://doi.org/10.5281/zenodo.15189605

The data, standardized through rigorous segmentation and registration protocols, is suitable for statistical shape modeling, computational analysis, and machine learning applications.

The folder "additional_data" provides results and metadata of the examples in the associated article: BoneDat, a database of standardized bone morphology for in-sillico analyses
DOI: 10.5281/zenodo.15189761
title: BoneDat, a database of standardized bone morphology for in-sillico analyses

description: BoneDat is a comprehensive standardized human bone morphology dataset derived from 278 clinical lumbopelvic Computed Tomography (CT) scans. The cohort spans ages 16 to 91 years, is balanced by sex, and is categorized into ten age groups. The dataset provides meticulously curated morphological data on the pelvis, sacrum, and L4/L5 vertebrae.

The contents include:



Raw Data: Anonymized CT scans in NIfTI format (.nii.gz) and an accompanying table with subject metadata (unique ID, age at scan, sex) and Hounsfield Unit calibration values from reference tissues for potential retrospective Bone Mineral Density (BMD) estimation.

Segmentations: Multi-label segmentation masks (NIfTI format) delineating individual pelvic bones, the sacrum, and L4/L5 vertebrae, generated using the Biomedisa algorithm with manual refinement and expert validation. Trimmed CT scans corresponding to the masks are also provided.

Normalized Geometries: Volumetric meshes (*.vtk format) representing the spatially normalized geometry of each subject's lumbopelvic region. These were created by applying subject-specific deformation fields (obtained during registration) to a high-quality template mesh, followed by mesh relaxation.

Reference Templates: Average lumbopelvic morphology templates (NIfTI format) represent the entire cohort's mean shape generated using an iterative, unbiased template estimation algorithm (SyN ANTs).

Registration Data: Outputs from the multi-stage registration process (ANTs: rigid, affine, Symmetric Normalization - SyN), including rigidly aligned CT volumes, non-linearly warped CT volumes registered to the template space, affine transformation matrices (.mat), and non-linear deformation fields (.nii.gz or *.mat).


BoneDat provides a structured dataset of raw and processed lumbopelvic morphological data. Due to its substantial size, particularly the extensive registration outputs, the dataset is distributed across seven linked repositories:

BoneDat-part1: https://doi.org/10.5281/zenodo.15188359

BoneDat-part2: https://doi.org/10.5281/zenodo.15189451

BoneDat-part3: https://doi.org/10.5281/zenodo.15189455

BoneDat-part4: https://doi.org/10.5281/zenodo.15189459

BoneDat-part5: https://doi.org/10.5281/zenodo.15189469

BoneDat-part6: https://doi.org/10.5281/zenodo.15189474

BoneDat-part7: https://doi.org/10.5281/zenodo.15189605

The data, standardized through rigorous segmentation and registration protocols, is suitable for statistical shape modeling, computational analysis, and machine learning applications.

The folder "additional_data" provides results and metadata of the examples in the associated article: BoneDat, a database of standardized bone morphology for in-sillico analyses
DOI: 10.5281/zenodo.15212767
title: Fire Probability Index (FPI) – Tambacounda, Senegal, 1999-2024

description: Science Case Name 



Multi-Hazards in Senegal.





Dataset Name/Title 



Fire Probability Index (FPI) – Tambacounda, Senegal, 1999-2024





Dataset Description 



The dataset contains gridded data on FPI over Tambacounda area of Senegal.





Key Methodologies 



FPI is computed from the fuel moisture content (FMC) and vegetation conent (VC) (Huesca et al., 2009). 

FMC is a function of the relative humidity of air (RH), air temperature, and extinction moisture content (EMC) of the fuel (also named as extinction humidity). The shape of the relationship is linear or quadratic, depending on the RH class.

VC is computed from NDVI as the relative greenness, further normalized to the maximum possible VC (computed assuming NDVI equals 1).





Temporal Domain 



1999-2024, dekadal (10-daily)





Spatial Domain 



Tambacounda, Senegal, West Africa

Spatial resolution 1 km x 1 km, ca 0.01°x0.01° (EPGS:4326)





Key Variables/Indicators 



Spatio-temporal clusters of heatwave events





Data Format 



ENVI files





Source Data 



ERA5-Land daily average air temperature and relative humidity

Copernicus land monitoring dekadal NDVI





Accessibility 



Zenodo, https://doi.org/10.5281/zenodo.15212768 





Stakeholder Relevance 



Identifying and assessing past heatwave events for multi-hazard events monitoring, prediction and preparedness.





Limitations/Assumptions 



Two levels of extinction moisture contents (EMC) were used (15% and 40%) because the true value is not known.





Additional Outputs/information



The dataset access is currently restricted due to pending related publication.





Contact Information 



Egor Prikaziuk (UT-ITC, Faculty of Geo-Information Science and Earth Observation, ITC, University of Twente, the Netherlands)
DOI: 10.15468/dl.qkwybt
title: Occurrence Download

description: A dataset containing 789 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Chenopodium berlandieri Moq."
 ]
}

 The dataset includes 789 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259340-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yffb25
title: Occurrence Download

description: A dataset containing 319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-89.36025 -12.83722,-57.55444 -12.83722,-57.55444 -0.10930,-89.36025 -0.10930,-89.36025 -12.83722))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Erythrina edulis Triana ex Micheli"
 ]
}

 The dataset includes 319 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219900-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e523ku
title: Occurrence Download

description: A dataset containing 209146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epilobium palustre L.",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 209146 records from 834 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259355-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjq7wn
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Andrena parathoracica Hirashima, 1957",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 16 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219877-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.basg6j
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Homalomena pyrospatha Bogner"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248561-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p7fwsb
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Laplacea tomentosa G.Don"
 ]
}

 The dataset includes 30 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0187926-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d6jygc
title: Occurrence Download

description: A dataset containing 1407 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ananas comosus (L.) Merr."
 ]
}

 The dataset includes 1407 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010135-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csbyuy
title: Occurrence Download

description: A dataset containing 655 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "GadmGid is BEL.3.3_1",
 "TaxonKey is Bombus lapidarius (Linnaeus, 1758)",
 "Year 2000-2022"
 ]
}

 The dataset includes 655 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0202578-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2c9567
title: Occurrence Download

description: A dataset containing 264 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Artabotrys hexapetalus (L.f.) Bhandari"
 ]
}

 The dataset includes 264 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248562-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gskswg
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dumasia cordifolia Benth. ex Baker",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 99 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0266218-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmf2eh
title: Occurrence Download

description: A dataset containing 3720 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boana boans (Linnaeus, 1758)"
 ]
}

 The dataset includes 3720 records from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259345-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mrk764
title: Occurrence Download

description: A dataset containing 498 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "PublishingOrg is one of (256035fe-75ff-4a7c-94bc-86af590c9050)",
 "DatasetKey is one of (Herbario Enrique Forero de la Universidad de la Amazonia (HUAZ))",
 "TaxonKey is one of (Araceae)"
 ]
 }
 ]
}

 The dataset includes 498 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0208844-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhdcrx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nesocoelopus miyatakei Sakai, 1979",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219889-220831081235567/datasets/export for details.
DOI: 10.15468/dl.25hztn
title: Occurrence Download

description: A dataset containing 18300 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agropyron cristatum (L.) Gaertn.",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 18300 records from 361 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0259349-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjxfb4
title: Occurrence Download

description: A dataset containing 5512 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((24.73803 -27.24832,32.31784 -27.24832,32.31784 -24.21769,24.73803 -24.21769,24.73803 -27.24832))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anthropoides paradiseus (A.A.H.Lichtenstein, 1793)"
 ]
}

 The dataset includes 5512 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007293-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3q8cu
title: Occurrence Download

description: A dataset containing 3766 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((22.41659 -27.11255,33.90096 -27.11255,33.90096 -22.52077,22.41659 -22.52077,22.41659 -27.11255))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Circus ranivorus (Daudin, 1800)"
 ]
}

 The dataset includes 3766 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007294-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gmd294
title: Occurrence Download

description: A dataset containing 186607 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Triturus Rafinesque, 1815)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than 10000",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 186607 records from 883 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007270-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8nvzg2
title: Occurrence Download

description: A dataset containing 170641 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Czechia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (LC, NT, VU, EN, CR)",
 "License is one of (CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 1924-2024"
 ]
}

 The dataset includes 170641 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007267-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u7wdgj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apus apus (Linnaeus, 1758)",
 "Year is 19",
 "Country is Netherlands"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007297-241107131044228/datasets/export for details.
DOI: 10.15468/dl.a2msvz
title: Occurrence Download

description: A dataset containing 4443 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((22.07779 -27.43065,34.11585 -27.43065,34.11585 -22.61749,22.07779 -22.61749,22.07779 -27.43065))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eupodotis caerulescens (Vieillot, 1820)"
 ]
}

 The dataset includes 4443 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007298-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7mp8p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Haematopus ostralegus Linnaeus, 1758",
 "Year is 19",
 "Country is Netherlands"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007300-241107131044228/datasets/export for details.
DOI: 10.15468/dl.a7vd4a
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudorasbora parva (Temminck & Schlegel, 1846)",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 50 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007302-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6bzsjj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vanessa atalanta (Linnaeus, 1758)",
 "Year is 19",
 "Country is Netherlands"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007305-241107131044228/datasets/export for details.
DOI: 10.15468/dl.vqddrr
title: Occurrence Download

description: A dataset containing 2043 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((25.76388 -27.21357,32.08648 -27.21357,32.08648 -24.68562,25.76388 -24.68562,25.76388 -27.21357))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eupodotis senegalensis (Vieillot, 1820)"
 ]
}

 The dataset includes 2043 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007304-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nagmpb
title: Occurrence Download

description: A dataset containing 717 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "OccurrenceStatus is Present",
 "TaxonKey is Melanosuchus niger (Spix, 1825)"
 ]
}

 The dataset includes 717 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007306-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z2r5sg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polyommatus icarus (von Rottemburg, 1775)",
 "Year is 19",
 "Country is Netherlands"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007308-241107131044228/datasets/export for details.
DOI: 10.15468/dl.y4xb6q
title: Occurrence Download

description: A dataset containing 3240 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((26.32637 -27.22643,30.79371 -27.22643,30.79371 -25.44027,26.32637 -25.44027,26.32637 -27.22643))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eupodotis caerulescens (Vieillot, 1820)"
 ]
}

 The dataset includes 3240 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007307-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3bxfmk
title: Occurrence Download

description: A dataset containing 645 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((25.07461 -27.45143,34.41989 -27.45143,34.41989 -23.71492,25.07461 -23.71492,25.07461 -27.45143))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gorsachius leuconotus (Wagler, 1827)"
 ]
}

 The dataset includes 645 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007311-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqdabk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelophylax esculentus (Linnaeus, 1758)",
 "Year is 19",
 "Country is Netherlands"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007312-241107131044228/datasets/export for details.