cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11222080
title: Unique composition and evolution histories of low velocity mantle domains: Data and analysis

description: Dataset and Jupyter notebook accompanying 'Unique composition and evolution histories of low velocity mantle domains'. 

Dataset includes:



Present day properties of simulated mantle for simulations RCY, B=0.22, B=0.44, visc2, visc3, CMB2600, CMB2800, COMP, PRM.

Present day predicted seismic properties for simulations RCY, B=0.22, B=0.44, visc2, visc3, CMB2600, CMB2800, COMP.

Present day predicted seismic properties for simulation PRM assuming 'primordial' material to be i) basaltic oceanic crust ii) chondrite enriched basalt (CEB).

Present day delta Vs for simulations RCY, B=0.22, B=0.44, visc2, visc3, CMB2600, CMB2800, COMP, PRM, filtered using the resolution of seismic tomography model S40RTS.

Properties of simulated mantle at 100 Myr intervals from 900 Ma - 100 Ma inclusive for simulation RCY. 

P-T tables with predicted abundance of post-perovskite for different mantle lithologies (harzburgite, lherzolite and basalt - as defined in the paper).


Jupyter notebook `s-llvps.ipynb` contains code for identifying simulated large low-velocity provinces (S-LLVPs), extracting assoicated model properties and plotting results. Python module files terra_utils.py and ppv.py are also included and required by the code in the notebook. 

There are a number of pre-requisite packages that will need to be installed in order to run the Jupyter notebook, including terratools, a software package written specifically for reading and postprocessing outputs from TERRA simulations. Installation instructions can be found on the GitHub repository. 

Due to the TERRA code pre-dating open source licensing, we do not currently have permission to publicly share all aspects of the code. In code_pieces.F90 we include code snippets which were implemented for this study. 

Simulations were conducted using ARCHER2, the UK's national super-computing service.
DOI: 10.5281/zenodo.14187347
title: leiothlypis_celata_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.14187348
title: leiothlypis_celata_decontaminated_FSCR.fasta.gz
DOI: 10.5285/a697ee6a3b314d4b866ec73d613369bb
title: C3S: Obs4MIPs format GOME-type Total Ozone Essential Climate Variable (GTO-ECV), Version 9.0

description: This dataset contains a time series of monthly averaged total ozone column data from nadir-viewing satellite sensors in Obs4MIPs format. It has been reformated from Version 9 of the GOME-type Total Ozone Essential Climate Variable (GTO-ECV) product, that has been generated as part of the European Union Copernicus Climate Change Service (C3S) ozone project. 

GTO-ECV is generated by combining measurements from several nadir-viewing satellite sensors (GOME/ERS-2, SCIAMACHY/Envisat, OMI/Aura, GOME-2/MetOp-A, GOME-2/MetOp-B, TROPOMI/Sentinel-5P, and GOME-2/MetOp-C) into one single cohesive record. The merging approach was developed in the framework of the European Space Agency’s Climate Change Initiative (ESA-CCI) ozone project.
DOI: 10.6084/m9.figshare.27854706.v2
title: <b>Clinical </b><b>Characteristics </b><b>and Outcomes </b><b>of Patients Admitted to Intensive Care Units after Surgery</b>

description: This study aimed to examine the characteristics and outcomes of postoperative patients admitted to intensive care units (ICUs) in Nepal. A retrospective analysis was conducted across 18 ICUs from January 1, 2020, to December 31, 2023, involving 4,509 surgical patients. The study found that 65.9% of these patients were admitted directly from operating theaters, while 23.9% were transferred from wards. The readmission rate was higher for ward-admitted patients (11%) compared to those admitted directly from surgery (3.66%). Overall, surgical patient mortality was 9%, with significantly higher mortality among those admitted from wards (15.8%) versus those from operating theaters (6%). These findings highlight the need for targeted interventions to improve outcomes for patients transferred from wards to ICUs.
DOI: 10.15472/tsp7kg
title: Registros de Micrurus en Mutatá (Antioquia) y Bahía Solano (Chocó) para bioprospección de los venenos en el contexto de su diversidad taxonómica y aproximación -ómica

description: Los registros de la presente publicación corresponden a los individuos de Micrurus encontrados durante las actividades de campo enmarcadas en el proyecto de investigación titulado: Bioprospección de los venenos de Micrurus en el contexto de su diversidad taxonómica y aproximación -ómica, para el hallazgo de moléculas con actividad sobre patógenos de interés agrícola.
description: El presente conjunto de datos cuenta con 2 registros biológicos de la familia Elapidae observados en Mutatá (Antioquia) y Bahía Solano (Chocó) durante junio y agosto del 2024.
DOI: 10.15468/dl.9b54qv
title: Occurrence Download

description: A dataset containing 14470 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Medicago orbicularis (L.) Bartal."
 ]
}

 The dataset includes 14470 records from 471 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022196-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wq8nfz
title: Occurrence Download

description: A dataset containing 2923 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tecoma stans (L.) Juss. ex Kunth"
 ]
}

 The dataset includes 2923 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022197-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfbyct
title: Occurrence Download

description: A dataset containing 846 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Mephitis macroura Lichtenstein, 1832",
 "Year 1950-2020"
 ]
}

 The dataset includes 846 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020211-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.usvxym
title: Occurrence Download

description: A dataset containing 7201 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-100.61441 45.95424,-70.38559 45.95424,-70.38559 58.04576,-100.61441 58.04576,-100.61441 45.95424))",
 "Geometry POLYGON((-121.24677 39.82764,-121.33905 39.26074,-121.20282 38.30713,-120.67987 38.30273,-119.88007 38.8125,-119.90204 39.30908,-120.13055 39.74854,-120.8952 39.99902,-121.24677 39.82764))"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Picoides arcticus (Swainson, 1832)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7201 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013507-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvvolq
title: Occurrence Download

description: A dataset containing 5451 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Carya aquatica (F.Michx.) Nutt.",
 "TaxonKey is Carya cordiformis (Wangenh.) C.Koch",
 "TaxonKey is Carya floridana Sarg."
 ]
 },
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Fossil",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Unknown evidence",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence"
 ]
 }
 ]
}

 The dataset includes 5451 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011275-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7k244x
title: Occurrence Download

description: A dataset listing the 279068 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset's 279068 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021664-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjgnpk
title: Occurrence Download

description: A dataset containing 475 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Oenocarpus balickii F.Kahn",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 475 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013508-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdl6bc
title: Occurrence Download

description: A dataset containing 1792876 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 1792876 records from 405 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011276-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4lvsnd
title: Occurrence Download

description: A dataset containing 15573 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prosopis L."
 ]
}

 The dataset includes 15573 records from 256 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013508-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjyty9
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anolis petersii Bocourt, 1873"
 ]
}

 The dataset includes 267 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015366-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvx0js
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mirandea sylvatica S.Acosta Castellanos"
 ]
}

 The dataset includes 73 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011276-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hw7ihj
title: Occurrence Download

description: A dataset containing 1224 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Krugiodendron ferreum (Vahl) Urb."
 ]
}

 The dataset includes 1224 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013509-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zu49nv
title: Occurrence Download

description: A dataset containing 14023 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Alligator mississippiensis (Daudin, 1801)",
 "Year 2010-2020"
 ]
}

 The dataset includes 14023 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068660-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m31bzq
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1998-2018",
 "HasCoordinate is true",
 "TaxonKey is Faidherbia albida (Delile) A.Chev.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 224 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011276-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8952ac
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-98.70117 19.72017,-81.29883 8.61361,-56.07422 5.58318,-49.6582 16.71512,-72.50977 26.66219,-85.51758 32.34284,-97.29492 30.58591,-98.70117 19.72017))",
 "HasGeospatialIssue is false",
 "TaxonKey is Carcharhinus signatus (Poey, 1868)"
 ]
}

 The dataset includes 55 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115174-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.l3odrx
title: Occurrence Download

description: A dataset containing 4884 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cryptandra parvifolia (Hook.) Hook.fil., Pleione formosana Hayata)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4884 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013509-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zangm
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia resinifera O.Berg"
 ]
}

 The dataset includes 142 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045160-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jp7bmt
title: Occurrence Download

description: A dataset containing 273402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Drosera L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 273402 records from 587 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002759-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.htefyg
title: Occurrence Download

description: A dataset containing 1664 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Priotelus roseigaster (Vieillot, 1817)"
 ]
}

 The dataset includes 1664 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054926-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4uxtjs
title: Occurrence Download

description: A dataset containing 21303 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((35.32496433333334 32.097476, 69.37031999999999 32.097476, 69.37031999999999 49.184106666666665, 35.32496433333334 49.184106666666665, 35.32496433333334 32.097476))",
 "EventDate is 2020-07-01,2020-07-31"
 ]
}

 The dataset includes 21303 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045162-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wbx2s9
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Berberis dasyclada Ahrendt"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054927-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4qm1p
title: Occurrence Download

description: A dataset containing 4753921 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Literature Occurrence"
 ]
 },
 "TaxonKey is Lamiales"
 ]
}

 The dataset includes 4753921 records from 1000 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002724-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.14975.64163
title: Ad for Southern Innovator Issue 3
DOI: 10.15468/vwm49e
title: Données naturalistes opportunistes issues de la plateforme INaturalist-Données naturalistes opportunistes "poildortie"

description: Données naturalistes opportunistes saisies sur iNaturalist à partir du compte "poildortie"
DOI: 10.13140/rg.2.2.11947.98089
title: Profiling and Curing from Shigella Spp Isolated from Plasmid Diarrheal Patients.8
DOI: 10.13140/rg.2.2.15547.95523
title: Aerospace Vehicle Design - Preliminary and Detailed Design Report
DOI: 10.13140/rg.2.2.16262.91207
title: Không đề 4
DOI: 10.5281/zenodo.17397842
title: Source data for MTA-assisted GWAS in wild barley.

description: Genotype



B1K_raw: 



Raw data from B1K SNP plattform, originally created for Tiwari et al. 2024, Physiologia Plantarum.



B1K_final:



Processed genotyping data.




Phenotype



Merged_file_Tier1_enviro:



Processed high troughput phenotyping data for B1K barley generated in the Photon Systems Instruments Plantscreen phenotyping platform.



Spectrum_Tier1:



Hyperspectral reflectance measurements for B1K barley generated in the Photon Systems Instruments Plantscreen phenotyping platform.



Capitalize_All parameters and ID description:



Trait & sample nomenclature and parameter descriptions of phenotyping data.
DOI: 10.5281/zenodo.17397843
title: Source data for MTA-assisted GWAS in wild barley.

description: Genotype



B1K_raw: 



Raw data from B1K SNP plattform, originally created for Tiwari et al. 2024, Physiologia Plantarum.



B1K_final:



Processed genotyping data.




Phenotype



Merged_file_Tier1_enviro:



Processed high troughput phenotyping data for B1K barley generated in the Photon Systems Instruments Plantscreen phenotyping platform.



Spectrum_Tier1:



Hyperspectral reflectance measurements for B1K barley generated in the Photon Systems Instruments Plantscreen phenotyping platform.



Capitalize_All parameters and ID description:



Trait & sample nomenclature and parameter descriptions of phenotyping data.
DOI: 10.13140/rg.2.2.10034.35523/1
title: Coronavirus Timeline
DOI: 10.15468/dl.ceemme
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Pseudacris collinsorum Ospina, Tieu, Apodaca & Lemmon, 2020)"
 ]
}

 The dataset includes 80 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000532-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14543094
title: Protein Structural Hotspots Detection using AMX
title: Detection of Protein Structural Hotspots using AI Distillation and Explainability: Application to the DAX-1 Protein

description: This archive contains:



a demonstration notebook, prepared for Google Colab: file or link to Colab

an example of input data (pdb structures predicted with OmegaFold):



structure of DAX-1 (UniProt ID: P51843): P51843_WT.pdb

structures of the 8390 single amino acid variants of DAX-1: variants_DAX-1.zip
DOI: 10.5281/zenodo.14549589
title: Protein Structural Hotspots Detection using AMX
title: Detection of Protein Structural Hotspots using AI Distillation and Explainability: Application to the DAX-1 Protein

description: This archive contains:



a demonstration notebook, prepared for Google Colab: AMX.ipynb or link to Colab

an example of input data (pdb structures predicted with OmegaFold):



structure of DAX-1 (UniProt ID: P51843): P51843_WT.pdb

structures of the 8390 single amino acid variants of DAX-1: variants_DAX-1.zip
DOI: 10.5281/zenodo.14845866
title: Protein Structural Hotspots Detection using AMX
title: Detection of Protein Structural Hotspots using AI Distillation and Explainability: Application to the DAX-1 Protein

description: This archive contains examples of input data for the AMX analysis pipeline (demonstration notebook on Google Colab).

Example datasets (structures predicted with OmegaFold):



structure of the 7467  single amino acid variants of P53, plus WT structure, in PDB format: variants_P53.zip

structures of the 8390 single amino acid variants of DAX-1, plus WT structure, in PDB format: variants_DAX-1.zip
DOI: 10.15468/dl.9k7gca
title: Occurrence Download

description: A dataset containing 4947 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Living Specimen, Human Observation, Observation, Material citation, Occurrence evidence, Specimen)",
 "Continent is South America",
 "Country is Colombia",
 "GadmGid is COL.22.32_2",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "Month is one of (January, February, April, March, May, June, July, August, September, October, November, December)",
 "TaxonKey is Animalia",
 "Year 1000-2025"
 ]
}

 The dataset includes 4947 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000535-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8k4epn
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Siren reticulata Graham, Kline, Steen & Kelehear, 2018)"
 ]
}

 The dataset includes 52 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000537-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.akgc92
title: Occurrence Download

description: A dataset containing 54029 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Emys orbicularis (Linnaeus, 1758)"
 ]
}

 The dataset includes 54029 records from 847 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000539-250212154643175/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.