cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12947933.v1
title: Additional file 5 of Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease

description: Additional file 5: Results of the metabolomic profiling of stool samples.
DOI: 10.6084/m9.figshare.12947924.v1
title: Additional file 2 of Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease

description: Additional file 2: Results of the taxonomic profiling of metagenomic samples.
DOI: 10.6084/m9.figshare.12947936
title: Additional file 6 of Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease

description: Additional file 6: Supplementary text describing details of data analysis methods.
DOI: 10.6084/m9.figshare.12947936.v1
title: Additional file 6 of Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease

description: Additional file 6: Supplementary text describing details of data analysis methods.
DOI: 10.6084/m9.figshare.12947939.v1
title: Additional file 7 of Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease

description: Additional file 7: The results of association studies between significant features (microbes, pathways and metabolites).
DOI: 10.6084/m9.figshare.12947939
title: Additional file 7 of Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease

description: Additional file 7: The results of association studies between significant features (microbes, pathways and metabolites).
DOI: 10.6084/m9.figshare.12947942.v1
title: Additional file 8 of Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease

description: Additional file 8: Functional categorization of pathways with significantly altered abundances.
DOI: 10.6084/m9.figshare.12947954.v1
title: Additional file 2 of Maternal gut microbes shape the early-life assembly of gut microbiota in passerine chicks via nests

description: Additional file 2: Table S1. Metadata for each library in this study.
DOI: 10.6084/m9.figshare.12947942
title: Additional file 8 of Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease

description: Additional file 8: Functional categorization of pathways with significantly altered abundances.
DOI: 10.6084/m9.figshare.12947962
title: Additional file 1 of Diversity of antibiotics in hospital and municipal wastewaters and receiving water bodies and removal efficiency by treatment processes: a systematic review protocol

description: Additional file 1. ROSES form for systematic review protocol of Diversity of antibiotics in hospital and municipal wastewaters and receiving water bodies and removal efficiency by treatment processes.
DOI: 10.6084/m9.figshare.12947954
title: Additional file 2 of Maternal gut microbes shape the early-life assembly of gut microbiota in passerine chicks via nests

description: Additional file 2: Table S1. Metadata for each library in this study.
DOI: 10.6084/m9.figshare.12947962.v1
title: Additional file 1 of Diversity of antibiotics in hospital and municipal wastewaters and receiving water bodies and removal efficiency by treatment processes: a systematic review protocol

description: Additional file 1. ROSES form for systematic review protocol of Diversity of antibiotics in hospital and municipal wastewaters and receiving water bodies and removal efficiency by treatment processes.
DOI: 10.6084/m9.figshare.12948100.v1
title: Additional file 4 of Developmentally regulated activation of defense allows for rapid inhibition of infection in age-related resistance to Phytophthora capsici in cucumber fruit

description: Additional file 4: Supplementary file 4. GO-term enrichment analysis of the resistant network modules
DOI: 10.6084/m9.figshare.12948097.v1
title: Additional file 3 of Developmentally regulated activation of defense allows for rapid inhibition of infection in age-related resistance to Phytophthora capsici in cucumber fruit

description: Additional file 3: Supplementary file 3. Gene module assignment and normalized expression – susceptible network
DOI: 10.6084/m9.figshare.12948100
title: Additional file 4 of Developmentally regulated activation of defense allows for rapid inhibition of infection in age-related resistance to Phytophthora capsici in cucumber fruit

description: Additional file 4: Supplementary file 4. GO-term enrichment analysis of the resistant network modules
DOI: 10.6084/m9.figshare.12948094.v1
title: Additional file 2 of Developmentally regulated activation of defense allows for rapid inhibition of infection in age-related resistance to Phytophthora capsici in cucumber fruit

description: Additional file 2: Supplementary file 2.: Gene module assignment and normalized expression – resistant network
DOI: 10.6084/m9.figshare.12948097
title: Additional file 3 of Developmentally regulated activation of defense allows for rapid inhibition of infection in age-related resistance to Phytophthora capsici in cucumber fruit

description: Additional file 3: Supplementary file 3. Gene module assignment and normalized expression – susceptible network
DOI: 10.6084/m9.figshare.12948091.v1
title: Additional file 1 of Developmentally regulated activation of defense allows for rapid inhibition of infection in age-related resistance to Phytophthora capsici in cucumber fruit

description: Additional file 1: Supplementary file 1.: Genes involved in an early incompatible interaction
DOI: 10.6084/m9.figshare.12948094
title: Additional file 2 of Developmentally regulated activation of defense allows for rapid inhibition of infection in age-related resistance to Phytophthora capsici in cucumber fruit

description: Additional file 2: Supplementary file 2.: Gene module assignment and normalized expression – resistant network
DOI: 10.6084/m9.figshare.12948091
title: Additional file 1 of Developmentally regulated activation of defense allows for rapid inhibition of infection in age-related resistance to Phytophthora capsici in cucumber fruit

description: Additional file 1: Supplementary file 1.: Genes involved in an early incompatible interaction
DOI: 10.6084/m9.figshare.12948169.v1
title: Additional file 1 of Reduced phosphorus intake throughout gestation and lactation of sows is mitigated by transcriptional adaptations in kidney and intestine

description: Additional file 1: Table S1. Most differentially expressed transcripts in jejunum between diverging phosphorus diet groups.
DOI: 10.6084/m9.figshare.12948169
title: Additional file 1 of Reduced phosphorus intake throughout gestation and lactation of sows is mitigated by transcriptional adaptations in kidney and intestine

description: Additional file 1: Table S1. Most differentially expressed transcripts in jejunum between diverging phosphorus diet groups.
DOI: 10.6084/m9.figshare.12948172
title: Additional file 2 of Reduced phosphorus intake throughout gestation and lactation of sows is mitigated by transcriptional adaptations in kidney and intestine

description: Additional file 2: Table S2. Results of the KEGG pathway enrichment analysis considering 79 DEGs obtained from analysis of jejunum.
DOI: 10.6084/m9.figshare.12948172.v1
title: Additional file 2 of Reduced phosphorus intake throughout gestation and lactation of sows is mitigated by transcriptional adaptations in kidney and intestine

description: Additional file 2: Table S2. Results of the KEGG pathway enrichment analysis considering 79 DEGs obtained from analysis of jejunum.
DOI: 10.6084/m9.figshare.12948206
title: Additional file 1 of “I can guess the month … but beyond that, I can’t tell” an exploratory qualitative study of health care provider perspectives on gestational age estimation in Rajasthan, India

description: Additional file 1. Annexure 1
DOI: 10.6084/m9.figshare.12948206.v1
title: Additional file 1 of “I can guess the month … but beyond that, I can’t tell” an exploratory qualitative study of health care provider perspectives on gestational age estimation in Rajasthan, India

description: Additional file 1. Annexure 1
DOI: 10.25345/c5tf26
title: MassIVE MSV000086126 - Global proteome and phosphoproteome characterization of sepsis-induced kidney injury
title: Sepsis-induced acute kidney injury (S-AKI) is the most common complication in hospitalized and critically ill patients, highlighted by a rapid decline of kidney function occurring a few hours or days after sepsis onset. Systemic inflammation elicited by microbial infections is believed to lead to kidney damage under immunocompromised conditions. However, while AKI has been recognized as a disease with long-term sequelae, partly due to the associated higher risk of chronic kidney disease (CKD), the understanding of kidney pathophysiology at the molecular level and the global view of dynamic regulations in situ after S-AKI, including the transition to CKD, remains limited. Existing studies of S-AKI mainly focus on deriving sepsis biomarkers from body fluids. In the present study, we constructed a mid-severity septic murine model using cecal ligation and puncture (CLP), and examined the temporal changes to the kidney proteome and phosphoproteome at day 2 and day 7 after CLP surgery, corresponding to S-AKI and the transition to CKD, respectively, by employing an ultrafast and economical filter-based sample processing method combined with the label-free quantitation approach. Collectively, we identified 2,119 proteins and 2,950 phosphosites through multi-proteomics analyses. Among them, we identified an array of highly promising candidate marker proteins indicative of disease onset and progression accompanied by immunoblot validations, and further denoted the pathways that are specifically responsive to S-AKI and its transition to CKD, which include regulation of cell metabolism regulation, oxidative stress, and energy consumption in the diseased kidneys. Our data can serve as an enriched resource for the identification of mechanisms and biomarkers for sepsis-induced kidney diseases.
DOI: 10.6084/m9.figshare.12948251
title: Dataset of Bacillus subtilis NRS-762 in pure culture on different agar media

description: <i>Bacillus subtilis</i> is an important biotechnology workhorse, but many undomesticated <i>Bacillus subtilis</i> strains exist, and research on these strains are uncovering hitherto unknown facets into their cell biology, metabolism, and physiology. This dataset comprises pictures of <i>B. subtilis</i> NRS-762 in pure culture format on different agar media, including an in-house formulated colourless agar medium. Incubation conditions were 30 <sup>o</sup>C for variable period of time depending on experiment need.
DOI: 10.6084/m9.figshare.12948254
title: Dataset of Escherichia coli DH5α in pure culture on different agar media

description: <i>Escherichia coli </i>DH5α<i> </i>(ATCC 53868) is the workhorse in molecular cloning. But, how does a pure culture of the bacterium look like on solid agar medium? Answer to this question depends on the medium used. Typically, <i>E. coli</i> DH5α would take on a beige, round colony morphology when grown on rich medium such as LB agar or Tryptic Soy Agar. However, the beige colour is absent from <i>E. coli</i> DH5α colonies grown on minimal salts agar such as a formulated colourless agar used in this study. Pictures of <i>E. coli</i> DH5α in pure culture on different agar media are encapsulated as a zip file dataset with this abstract. Incubation conditions were 37 <sup>o</sup>C under variable length of time on different agar media.
DOI: 10.6084/m9.figshare.12948254.v1
title: Dataset of Escherichia coli DH5α in pure culture on different agar media

description: <i>Escherichia coli </i>DH5α<i> </i>(ATCC 53868) is the workhorse in molecular cloning. But, how does a pure culture of the bacterium look like on solid agar medium? Answer to this question depends on the medium used. Typically, <i>E. coli</i> DH5α would take on a beige, round colony morphology when grown on rich medium such as LB agar or Tryptic Soy Agar. However, the beige colour is absent from <i>E. coli</i> DH5α colonies grown on minimal salts agar such as a formulated colourless agar used in this study. Pictures of <i>E. coli</i> DH5α in pure culture on different agar media are encapsulated as a zip file dataset with this abstract. Incubation conditions were 37 <sup>o</sup>C under variable length of time on different agar media.
DOI: 10.5281/zenodo.4025557
title: Degradation corrected 0.05 degree GOME-2 SIF datasets in Amazon area

description: An 8-day instrument degradation corrected 0.05 degree GOME-2 SIF dataset in Amazon area from 2010 to 2018. PK dataset from the spatially downscaled sun-induced fluorescence global product proposed by Gregory Duveiller in 2020 is corrected based on a pseudo-invariant method and then masked. Mean value composite method is used to produce monthly data. Files are organized in TIF format.
DOI: 10.5281/zenodo.4025556
title: Degradation corrected 0.05 degree GOME-2 SIF datasets in Amazon area

description: An 8-day instrument degradation corrected 0.05 degree GOME-2 SIF dataset in Amazon area from 2010 to 2018. PK dataset from the spatially downscaled sun-induced fluorescence global product proposed by Gregory Duveiller in 2020 is corrected based on a pseudo-invariant method and then masked. Mean value composite method is used to produce monthly data. Files are organized in TIF format.
DOI: 10.6084/m9.figshare.12948257
title: Dataset of Pseudomonas aeruginosa PRD-10 in pure culture on different agar media

description: <i>Pseudomonas aeruginosa </i>PRD-10 (ATCC 15442) is useful as a model organism for studying bacterial colonization of metal implants in biomedical settings. Typical culture of the bacterium on solid rich medium would reveal small, round, greenish-yellow mucoid colonies. More importantly, a greenish colouration was easily discernible along the streak lines on the agar plate. Such a colouration disappears during culture of <i>P. aeruginosa</i> PRD-10 on minimal salts agar medium. One important characteristic of this strain of <i>P. aeruginosa</i> was observation of retarded swarming motility. Pictures of <i>P. aeruginosa</i> PRD-10 in pure culture on different agar media are encapsulated as a zip file with this abstract. Incubation conditions were 37 <sup>o</sup>C for variable period of time for different agar media. <i></i>
DOI: 10.6084/m9.figshare.12948260
title: Dataset of Pseudomonas protegens Pf-5 in pure culture on different agar media

description: <i>Pseudomonas protegens</i> Pf-5 (ATCC BAA-477) is a Gram-negative pseudomonad with utility in leaching copper and gold from electronic scrap materials through the secretion of hydrogen cyanide. Typically, the bacterium grows on rich solid medium with a round, greenish colony morphology. But the greenish hue pales upon cultivation in minimal salts-based agar medium. This dataset comprises pictures of <i>P. protegens</i> Pf-5 growth on a variety of agar media. Incubation conditions were 30 <sup>o</sup>C for variable period of time on different agar media.
DOI: 10.6084/m9.figshare.12948260.v1
title: Dataset of Pseudomonas protegens Pf-5 in pure culture on different agar media

description: <i>Pseudomonas protegens</i> Pf-5 (ATCC BAA-477) is a Gram-negative pseudomonad with utility in leaching copper and gold from electronic scrap materials through the secretion of hydrogen cyanide. Typically, the bacterium grows on rich solid medium with a round, greenish colony morphology. But the greenish hue pales upon cultivation in minimal salts-based agar medium. This dataset comprises pictures of <i>P. protegens</i> Pf-5 growth on a variety of agar media. Incubation conditions were 30 <sup>o</sup>C for variable period of time on different agar media.
DOI: 10.5281/zenodo.4025672
title: Thailand ammonia

description: Thailand ammonia data
DOI: 10.6084/m9.figshare.12931844
title: The scope of city walls

description: Most Chinese cities built city walls during the Ming and Qing Dynasties (1368-1911). The scope of the city walls reflected the urban boundaries at that time. This paper describes a methodology to rebuild the urban boundaries of China of 15<sup>th</sup>-19<sup>th</sup> centuries by restoring the scope of their city walls. Firstly, the year of construction or reconstruction of the city walls could be obtained through collection and sorting of the historical <i>Local Chronicles</i> materials. Secondly, specialization of the scope of the city wall could be conducted based on the urban morphology method, and variety of documentation. Correlation and integration of the lifetime and the spatial data would produce the spatio-temporal dataset of the scope of city wall areas. Based on the proximity to the time of most of the city walls built, we generated the 15<sup>th</sup>-19<sup>th</sup> centuries urban boundary dataset of China in six representative years (i.e., 1400, 1537, 1648, 1708, 1787, and 1866). This dataset would contribute to research areas such as global change and land use change.
DOI: 10.6084/m9.figshare.12931844.v2
title: The scope of city walls

description: Most Chinese cities built city walls during the Ming and Qing Dynasties (1368-1911). The scope of the city walls reflected the urban boundaries at that time. This paper describes a methodology to rebuild the urban boundaries of China of 15<sup>th</sup>-19<sup>th</sup> centuries by restoring the scope of their city walls. Firstly, the year of construction or reconstruction of the city walls could be obtained through collection and sorting of the historical <i>Local Chronicles</i> materials. Secondly, specialization of the scope of the city wall could be conducted based on the urban morphology method, and variety of documentation. Correlation and integration of the lifetime and the spatial data would produce the spatio-temporal dataset of the scope of city wall areas. Based on the proximity to the time of most of the city walls built, we generated the 15<sup>th</sup>-19<sup>th</sup> centuries urban boundary dataset of China in six representative years (i.e., 1400, 1537, 1648, 1708, 1787, and 1866). This dataset would contribute to research areas such as global change and land use change.
DOI: 10.6084/m9.figshare.12931844.v1
title: The 15th-19th centuries urban boundary dataset of China reflected by the scope of city walls

description: Most Chinese cities built city walls during the Ming and Qing Dynasties (1368-1911). The scope of the city walls reflected the urban boundaries at that time. This paper describes a methodology to rebuild the urban boundaries of China of 15<sup>th</sup>-19<sup>th</sup> centuries by restoring the scope of their city walls. Firstly, the year of construction or reconstruction of the city walls could be obtained through collection and sorting of the historical <i>Local Chronicles</i> materials. Secondly, specialization of the scope of the city wall could be conducted based on the urban morphology method, and variety of documentation. Correlation and integration of the lifetime and the spatial data would produce the spatio-temporal dataset of the scope of city wall areas. Based on the proximity to the time of most of the city walls built, we generated the 15<sup>th</sup>-19<sup>th</sup> centuries urban boundary dataset of China in six representative years (i.e., 1400, 1537, 1648, 1708, 1787, and 1866). This dataset would contribute to research areas such as global change and land use change.
DOI: 10.6084/m9.figshare.9962654
title: Urban built-up area of 14-19th centuries in China

description: This dataset rebuilds the built-up areas of Chinese cities of 14<sup>th</sup>-19<sup>th</sup> centuries by restoring the time and the scope of city walls. Through the collection and sorting of the <i>Local Chronicles</i> materials, the construction and reconstruction time of each city wall is obtained. The period in which the scope of the city wall unchanged is recorded as a lifetime of the city’s built-up area. Based on the urban morphology method, the <i>Local Chronicles</i> materials, the military topographic map of the first half of the 20<sup>th</sup> century, and remote sensing images of the 1970s are used to spatialize the scope of the city wall. Finally, by correlating and integrating the spatial data of the city wall scope and the lifetime data of the urban built-up area, the spatio-temporal dataset of urban built-up areas of 14<sup>th</sup>-19<sup>th</sup> centuries in China is produced. This dataset is of great significance in the research fields such as global change and land use change.
DOI: 10.6084/m9.figshare.9962654.v2
title: Urban built-up area of 14-19th centuries in China

description: This dataset rebuilds the built-up areas of Chinese cities of 14<sup>th</sup>-19<sup>th</sup> centuries by restoring the time and the scope of city walls. Through the collection and sorting of the <i>Local Chronicles</i> materials, the construction and reconstruction time of each city wall is obtained. The period in which the scope of the city wall unchanged is recorded as a lifetime of the city’s built-up area. Based on the urban morphology method, the <i>Local Chronicles</i> materials, the military topographic map of the first half of the 20<sup>th</sup> century, and remote sensing images of the 1970s are used to spatialize the scope of the city wall. Finally, by correlating and integrating the spatial data of the city wall scope and the lifetime data of the urban built-up area, the spatio-temporal dataset of urban built-up areas of 14<sup>th</sup>-19<sup>th</sup> centuries in China is produced. This dataset is of great significance in the research fields such as global change and land use change.
DOI: 10.6084/m9.figshare.9962654.v1
title: Urban built-up area of 14-19th centuries in China

description: This dataset rebuilds the built-up areas of Chinese cities of 14<sup>th</sup>-19<sup>th</sup> centuries by restoring the time and the scope of city walls. Through the collection and sorting of the <i>Local Chronicles</i> materials, the construction and reconstruction time of each city wall is obtained. The period in which the scope of the city wall unchanged is recorded as a lifetime of the city’s built-up area. Based on the urban morphology method, the <i>Local Chronicles</i> materials, the military topographic map of the first half of the 20<sup>th</sup> century, and remote sensing images of the 1970s are used to spatialize the scope of the city wall. Finally, by correlating and integrating the spatial data of the city wall scope and the lifetime data of the urban built-up area, the spatio-temporal dataset of urban built-up areas of 14<sup>th</sup>-19<sup>th</sup> centuries in China is produced. This dataset is of great significance in the research fields such as global change and land use change.
DOI: 10.6084/m9.figshare.12948263.v1
title: Genetic characterization of multiple components contributing to fusarium head blight resistance of FL62R1, a Canadian bread wheat developed using systemic breeding

description: In this study, nine genomic loci were identified for controlling FHB resistance. SNP markers associated with detected QTL were presented by these four datasets listed here. <br>File 1. Sequence information of SNPs for FHB resistance QTLFile 2. the genetic map of FL62R1/Stettler Population <br>File 3. The genetic map of the FL62R1/Muchmore Population <br>File 4. Details of detected QTL for FHB resistance <br>