cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7734430
title: DeliCS Preprocessed Data

description: This data set consists of pre-processed MRI data as presented in <em>Deep Learning Initialized Compressed Sensing (Deli-CS) in Volumetric Spatio-Temporal Subspace Reconstruction </em>[1]. By downloading this dataset you will be able to re-create the figures presented in the paper using the code available on: https://github.com/SetsompopLab/deli-cs . Each tarball named <strong>caseXXX_preprocessed.tar.gz</strong> contains data related to that subject: <strong>deli_2min.npy</strong> is the DL genrated initial reconstruction. <strong>init_adj_2min.npy</strong> is the inital gridding reconstructions. <strong>ref_2min.npy</strong> is the reference LLR reconstruction (not initialized with deliCS). <strong>ref_6min.npy</strong> is the reference LLR reconstruction using 6 min of MRF acquisition. This is considered gold standard - NOT AVAILABLE FOR TEST CASES 002-004, which are acquired in the clinic. <strong>refine_2min_iters_20.npy </strong>is the reconstruction from the full proposed deliCS pipeline. <strong>T1... .npy </strong>are T1 maps from various matching reconstructions <strong>T2... .npy </strong>are T2 maps from various matching reconstructions Additionally, the tarball named <strong>bartcompare.tar.gz </strong>contains the <strong>ref_2min.npy </strong>density compensated Sigpy reconstruction along with <strong>bartrecon_2min.cfl </strong>and <strong>bartrecon_2min.hdr</strong>, which are the non-density compensated Bart reconstructions shown in figure 3 in [1]. Furthermore, meta-data needed to process the data as presented in [1] are included. Some of the figure generation code requires the subspace basis and dictionary to perform dictionary matching on the fly. The tarball <strong>shared.tar.gz</strong> contains: the k-space trajectory for 2 min data (<strong>traj_grp16_inacc2.mat</strong>) the k-space trajectory for 6 min data (<strong>traj_grp48_inacc1.mat</strong>) the density compensation function for each trajectory (<strong>dcf_2min.npy</strong> and <strong>dcf_6min.npy</strong>) the subspace basis (<strong>phi.mat</strong>) the dictionary (<strong>dictionary.mat</strong>) a scaling factor for the deli reconstruction (<strong>deli_scaling_2min.npy</strong>) [1] Iyer S, Schauman S, Sandino C, et al. Deep Learning Initialized Compressed Sensing (Deli-CS) in Volumetric Spatio-Temporal Subspace Reconstruction. <em>BioRxiv: </em>https://www.biorxiv.org/content/10.1101/2023.03.28.534431v1
description: {"references": ["Iyer S, Schauman S, Sandino C, et al.\u00a0Deep Learning Initialized Compressed Sensing (Deli-CS) in Volumetric Spatio-Temporal Subspace Reconstruction.\u00a0BioRxiv:\u00a0https://www.biorxiv.org/content/10.1101/2023.03.28.534431v1"]}
DOI: 10.3886/icpsr03666.v1
title: Uniform Crime Reports [United States], 1930-1959
title: Version 1

description: This collection contains electronic versions of the Uniform Crime Reports publications for the early years of the Uniform Crime Reporting Program in the United States. The reports, which were published monthly from 1930 to 1931, quarterly from 1932 to 1940, and annually from 1941 to 1959, consist of tables showing the number of offenses known to the police as reported to the Federal Bureau of Investigation by contributing police departments. The term "offenses known to the police" includes those crimes designated as Part I classes of the Uniform Classification code occurring within the police jurisdiction, whether they became known to the police through reports of police officers, citizens, prosecuting or court officials, or otherwise. They were confined to the following group of seven classes of grave offenses, historically those offenses most often and most completely reported to the police: felonious homicide, including murder and nonnegligent manslaughter, and manslaughter by negligence, rape, robbery, aggravated assault, burglary -- breaking and entering, and larceny -- theft (including thefts $50 and over, and thefts under $50, and auto theft). The figures also included the number of attempted crimes in the designated classes excepting attempted murders classed as aggravated assaults. In other words, an attempted burglary or robbery, for example, was reported in the same manner as if the crimes had been completed. "Offenses known to the police" included, therefore, all of the above offenses, including attempts, which were reported by the police departments and not merely arrests or cleared cases.
description: Datasets: DS0: Study-Level Files DS1: Uniform Crime Reports, 1930-1936 DS2: Uniform Crime Reports, 1937-1943 DS3: Uniform Crime Reports, 1944-1959
description: (1) This collection consists of data and documentation combined in the same files. The collection is provided as Portable Document Format (PDF) files. The PDF file format was developed by Adobe Systems Incorporated and can be accessed using PDF reader software, such as the Adobe Acrobat Reader. Information on how to obtain a copy of the Acrobat Reader is provided on the ICPSR Web site.
DOI: 10.5281/zenodo.7782275
title: Exact Thermodynamics and Transport in the Classical Sine-Gordon Model

description: Raw data and Mathematica Notebook for the thermodynamics of the classical sine-Gordon model. It can be found: A transfer matrix code for equilibrium correlation functions. A solver for the classical Thermodynamic Bethe Ansatz and partitioning protocol. Monte Carlo data of the partitioning protocol.
DOI: 10.5281/zenodo.7782274
title: Exact Thermodynamics and Transport in the Classical Sine-Gordon Model

description: Raw data and Mathematica Notebook for the thermodynamics of the classical sine-Gordon model. It can be found: A transfer matrix code for equilibrium correlation functions. A solver for the classical Thermodynamic Bethe Ansatz and partitioning protocol. Monte Carlo data of the partitioning protocol.
DOI: 10.5281/zenodo.7782388
title: Data for the manuscript "Calculations of Excited Electronic States by Converging on Saddle Points Using Generalized Mode Following"

description: Data of all energy curves presented.
DOI: 10.15787/vtt1/oh9jg0
title: Private 5G Technology and Implementation Testing (06-006)

description: Project Description: NEC developed a Video Analytics implementation for traffic intersections using 5G technology. This implementation included both hardware infrastructure and software applications supporting 5G communications, which allows low latency and secure communications. VTTI worked with NEC to facilitate the usage of a 3400-3500 MHz Program Experimental License (PEL) license band without SAS integration to successfully implement a private 5G deployment at the VTTI Smart Road intersection and Data Center. Specific use cases were developed to provide alerting mechanisms to both pedestrians and vehicles using C-V2X/PC5 technology when approaching a traffic intersection and a dangerous situation is detected. VTTI Team collected multiple scenario data at Virginia Tech Transportation Institute’s Smart Road intersection. Each scenario involves road users such as: pedestrian, motorcycle, bicycle, and vehicles doing normal maneuvers around the intersection and in some cases executing maneuvers that can generate alerts by the Private 5G Video Analytics system. Data Scope: VTTI team collected six use case scenarios on a Wireshark trace (pcap format). Each use case scenario data contains around 3K data entries for object detection around the intersection and the proper use case scenario identification. Object identification is being done from each sensor (camera) with XYZ coordinates. Scenario List: Collision Vehicle to Vehicle Overspeed Vehicle Parking Car Pedestrian Crossing Turn Right Car Vehicle – Bike Detection. Data Specification: Please see Data Specification document.
DOI: 10.5281/zenodo.7782370
title: data for: Inconsistencies Detection in Natural Language Requirements using ChatGPT: a Preliminary Evaluation

description: Supplementary material for the paper: Inconsistencies Detection in Natural Language Requirements using ChatGPT: a Preliminary Evaluation In the "gold" sheets there are the requirements: originals requirements are marked with "1" in the third column, mutants are marked with "0".
DOI: 10.5281/zenodo.7782369
title: data for: Inconsistencies Detection in Natural Language Requirements using ChatGPT: a Preliminary Evaluation

description: Supplementary material for the paper: Inconsistencies Detection in Natural Language Requirements using ChatGPT: a Preliminary Evaluation In the "gold" sheets there are the requirements: originals requirements are marked with "1" in the third column, mutants are marked with "0".
DOI: 10.5281/zenodo.7782463
title: Detecting Patterns In UML Diagrammatic Readings - An Experimental Study

description: This experiment was developed within the scope of the thesis "Constructing An Auditory Notation In Software Engineering - Understanding UML Models with voice and sound", with the main purpose of understanding if there any emerging patterns in how different people carry out diagrammatic readings of UML diagrams (Class and State Machine Diagrams, specifically). This is achieved by observing the most common actions amongst the participants.<br> <br> The transcriptions of this study are included here.
DOI: 10.5281/zenodo.7782462
title: Detecting Patterns In UML Diagrammatic Readings - An Experimental Study

description: This experiment was developed within the scope of the thesis "Constructing An Auditory Notation In Software Engineering - Understanding UML Models with voice and sound", with the main purpose of understanding if there any emerging patterns in how different people carry out diagrammatic readings of UML diagrams (Class and State Machine Diagrams, specifically). This is achieved by observing the most common actions amongst the participants.<br> <br> The transcriptions of this study are included here.
DOI: 10.35078/hqklgn
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Varginha| Município: Cristais

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.6084/m9.figshare.22354987.v1
title: Suppressing circIDE/miR-19b-3p/RBMS1 axis exhibits promoting-tumour activity through upregulating GPX4 to diminish ferroptosis in hepatocellular carcinoma

description: Ferroptosis is a newly characterized form of iron-dependent non-apoptotic cell death, which is closely associated with cancer progression. However, the functions and mechanisms in regulation of escaping from ferroptosis during hepatocellular carcinoma (HCC) progression remain unknown. In this study, we reported that the RNA binding motif single stranded interacting protein 1 (RBMS1) participated in HCC development，and functioned as a regulator of ferroptosis. Clinically, the downregulation of RBMS1 occurred in HCC tissues, and low RBMS1 expression was associated with worse HCC patients survival. Mechanistically, RBMS1 overexpression inhibited HCC cell growth by attenuating the expression of glutathione peroxidase 4 (GPX4)and further facilitated ferroptosis <i>in vitro</i> and <i>in vivo</i>. More importantly, a novel circIDE (hsa_circ_0000251) was identified to elevate RBMS1 expression via sponging miR-19b-3p in HCC cells. Collectively, our findings established circIDE/miR-19b-3p/RBMS1 axis as a regulator of ferroptosis, which could be a promising therapeutic target and prognostic factor.
DOI: 10.6084/m9.figshare.22354987
title: Suppressing circIDE/miR-19b-3p/RBMS1 axis exhibits promoting-tumour activity through upregulating GPX4 to diminish ferroptosis in hepatocellular carcinoma

description: Ferroptosis is a newly characterized form of iron-dependent non-apoptotic cell death, which is closely associated with cancer progression. However, the functions and mechanisms in regulation of escaping from ferroptosis during hepatocellular carcinoma (HCC) progression remain unknown. In this study, we reported that the RNA binding motif single stranded interacting protein 1 (RBMS1) participated in HCC development，and functioned as a regulator of ferroptosis. Clinically, the downregulation of RBMS1 occurred in HCC tissues, and low RBMS1 expression was associated with worse HCC patients survival. Mechanistically, RBMS1 overexpression inhibited HCC cell growth by attenuating the expression of glutathione peroxidase 4 (GPX4)and further facilitated ferroptosis <i>in vitro</i> and <i>in vivo</i>. More importantly, a novel circIDE (hsa_circ_0000251) was identified to elevate RBMS1 expression via sponging miR-19b-3p in HCC cells. Collectively, our findings established circIDE/miR-19b-3p/RBMS1 axis as a regulator of ferroptosis, which could be a promising therapeutic target and prognostic factor.
DOI: 10.6084/m9.figshare.22354986
title: Phenotypic and transcriptomic impact of expressing mammalian TET2 in the <i>Drosophila melanogaster</i> model

description: Ten-Eleven Translocation (TET) proteins have recently come to light as important epigenetic regulators conserved in multicellular organisms. TET knockdown studies in rodents have highlighted the critical role of these proteins for proper brain development and function. Mutations in mammalian mTET proteins and mTET2 specifically are frequent and deregulated in leukaemia and glioma respectively. Accordingly, we examined the role of mTET2 in tumorigenesis in larval haemocytes and adult heads in <i>Drosophila melanogaster</i>. Our findings showed that expression of mutant and wild type mTET2 resulted in general phenotypic defects in adult flies and accumulation of abdominal melanotic masses. Notably, flies with mTET2-R43G mutation at the N-terminus of mTET2 exhibited locomotor and circadian behavioural deficits, as well as reduced lifespan. Flies with mTET2-R1261C mutation in the catalytic domain, a common mutation in acute myeloid leukaemia (AML), displayed alterations affecting haemocyte haemostasis. Using transcriptomic approach, we identified upregulated immune genes in fly heads that were not exclusive to TET2 mutants but also found in wild type mTET2 flies. Furthermore, inhibiting expression of genes that were found to be deregulated in mTET2 mutants, such as those involved in immune pathways, autophagy, and transcriptional regulation, led to a rescue in fly survival, behaviour, and hemocyte number. This study identifies the transcriptomic profile of wild type mTET2 versus mTET2 mutants (catalytic versus non-catalytic) with indications of TET2 role in normal central nervous system (CNS) function and innate immunity.
DOI: 10.6084/m9.figshare.22354986.v1
title: Phenotypic and transcriptomic impact of expressing mammalian TET2 in the <i>Drosophila melanogaster</i> model

description: Ten-Eleven Translocation (TET) proteins have recently come to light as important epigenetic regulators conserved in multicellular organisms. TET knockdown studies in rodents have highlighted the critical role of these proteins for proper brain development and function. Mutations in mammalian mTET proteins and mTET2 specifically are frequent and deregulated in leukaemia and glioma respectively. Accordingly, we examined the role of mTET2 in tumorigenesis in larval haemocytes and adult heads in <i>Drosophila melanogaster</i>. Our findings showed that expression of mutant and wild type mTET2 resulted in general phenotypic defects in adult flies and accumulation of abdominal melanotic masses. Notably, flies with mTET2-R43G mutation at the N-terminus of mTET2 exhibited locomotor and circadian behavioural deficits, as well as reduced lifespan. Flies with mTET2-R1261C mutation in the catalytic domain, a common mutation in acute myeloid leukaemia (AML), displayed alterations affecting haemocyte haemostasis. Using transcriptomic approach, we identified upregulated immune genes in fly heads that were not exclusive to TET2 mutants but also found in wild type mTET2 flies. Furthermore, inhibiting expression of genes that were found to be deregulated in mTET2 mutants, such as those involved in immune pathways, autophagy, and transcriptional regulation, led to a rescue in fly survival, behaviour, and hemocyte number. This study identifies the transcriptomic profile of wild type mTET2 versus mTET2 mutants (catalytic versus non-catalytic) with indications of TET2 role in normal central nervous system (CNS) function and innate immunity.
DOI: 10.35078/2dcoky
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Varginha| Município: Crucilândia

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.6084/m9.figshare.13671062
title: Additional file 5 of A multilayered post-GWAS assessment on genetic susceptibility to pancreatic cancer

description: Additional file 5: Table S7. Results from the gene enrichment analysis performed with FUMA in the 1D prioritized genes.
DOI: 10.6084/m9.figshare.13671084
title: Additional file 5 of Specialized metabolic functions of keystone taxa sustain soil microbiome stability

description: Additional file 5:. The example data files and R codes for calculating βNTI metrics.
DOI: 10.6084/m9.figshare.23632611.v1
title: Additional file 1 of Risk factors for periventricular-intraventricular haemorrhage severity in preterm infants: a propensity score-matched analysis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.19962745
title: Radiotherapy-induced bone deterioration is exacerbated in diabetic rats treated with streptozotocin

description: Following radiotherapy, patients have decreased bone mass and increased risk of fragility fractures. Diabetes mellitus (DM) is also reported to have detrimental effects on bone architecture and quality. However, no clinical or experimental study has systematically characterized the bone phenotype of the diabetic patients following radiotherapy. After one month of streptozotocin injection, three-month-old male rats were subjected to focal radiotherapy (8 Gy, twice, at days 1 and 3), and then bone mass, microarchitecture, and turnover as well as bone cell activities were evaluated at 2 months post-irradiation. Micro-computed tomography results demonstrated that DM rats exhibited greater deterioration in trabecular bone mass and microarchitecture following irradiation compared with the damage to bone structure induced by DM or radiotherapy. The serum biochemical, bone histomorphometric, and gene expression assays revealed that DM combined with radiotherapy showed lower bone formation rate, osteoblast number on bone surface, and expression of osteoblast-related markers (ALP, Runx2, Osx, and Col-1) compared with DM or irradiation alone. DM plus irradiation also caused higher bone resorption rate, osteoclast number on bone surface, and expression of osteoclast-specific markers (TRAP, cathepsin K, and calcitonin receptor) than DM or irradiation treatment alone. Moreover, lower osteocyte survival and higher expression of Sost and DKK1 genes (two negative modulators of Wnt signaling) were observed in rats with combined DM and radiotherapy. Together, these findings revealed a higher deterioration of the diabetic skeleton following radiotherapy, and emphasized the clinical importance of health maintenance.
DOI: 10.6084/m9.figshare.13671075
title: Additional file 2 of Specialized metabolic functions of keystone taxa sustain soil microbiome stability

description: Additional file 2: Supplementary dataset 1. Results of null modeling analysis. Supplementary dataset 2. The relative abundance and variation degree of each OTU in every treatment. Supplementary dataset 3. The average variation degree (AVD) valves on different rarefaction depths of sequencing reads. Supplementary dataset 4. The relative abundance of every functional group by taxonomic annotation of the shotgun metagenomic sequencing data.
DOI: 10.6084/m9.figshare.19962648.v1
title: MicroRNA-629-5p promotes osteosarcoma proliferation and migration by targeting caveolin 1

description: Osteosarcoma is a highly malignant tumor that occurs in the bone. Previous studies have shown that multiple microRNAs (miRNAs) regulate the development of osteosarcoma. This study aimed to explore the role of miR-629-5p and its target gene, caveolin 1 (CAV1), in osteosarcoma development. To analyze the expression of miR-629-5p and CAV1 mRNA in osteosarcoma tissues and cell lines, qRT-PCR analysis was performed. Dual-luciferase reporter experiments were subsequently performed to validate the relationship between CAV1 and miR-629-5p. CCK8 assay was used to measure osteosarcoma cell proliferation, and wound-healing assay was performed to study their migratory phenotype. Our findings revealed that miR-629-5p was overexpressed in osteosarcoma tissues and cells, and thereby enhanced cell proliferation and migration. Further, we validated that miR-629-5p targets CAV1 mRNA directly. CAV1 expression, which was negatively correlated with miR-629-5p expression, was found to be downregulated in osteosarcoma tissue samples. Moreover, our data showed that an increase in CAV1 level led to a decline in osteosarcoma cell proliferation and migration, which could be rescued by miR-629-5p upregulation. Overall, our study confirmed that miR-629-5p promoted osteosarcoma proliferation and migration by directly inhibiting CAV1.
DOI: 10.6084/m9.figshare.13671078
title: Additional file 3 of Specialized metabolic functions of keystone taxa sustain soil microbiome stability

description: Additional file 3: Supplementary dataEx1. The community composition and the corresponding AVD values of different bacterial consortia from the study of Niu et al. [19].
DOI: 10.6084/m9.figshare.21009519.v1
title: Additional file 3 of OsFTL4, an FT-like Gene, Regulates Flowering Time and Drought Tolerance in Rice (Oryza sativa L.)

description: Additional file 3. Table S2: Predicted hormone-responsive elements in the OsFTL4 promoter.