cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5547814
title: Trifinio_PA_Impact_Governance_Manag_capacity.xlsx

description: Study site is the Trifinio Region of Central America. Forest PAs (12) in Trifinio are classified into two management restriction levels following the IUCN classification system—strict (Categories I-II) and multiple-use (Categories III-IV). PA classifications based on level of decentralization and management capacity is based on interview primary data. Medium resolution remotely sensed Landsat images (30 m pixels) were acquired to develop least-cloud, NDVI values over 30 years in seven epochs, spaced at approximately five-year intervals, starting in 1986 and ending in 2016, during the dry season (between January and March). Two dependent variables were developed with these data: (1) mean NDVI value for 1986-2016, averaging NDVI values across all seven epochs, and (2) annual change of NDVI values between 1986-2016. A number of spatial variables expected to be correlated with designation as a PA and greenness values were sampled for each pixel in the data set. These include baseline NDVI, elevation, slope, and distance to roads, municipality capitals and country capitals.
DOI: 10.6084/m9.figshare.5547817.v1
title: hg19 PAM sites

description: This contains the PAM sites found in hg19 (GrCh37) as described on the ExcisionFinder wiki and manuscript.
DOI: 10.6084/m9.figshare.5547763
title: Microlandscapes_MSPA.zip

description: Contains a shapefile with all the microlandscapes in Mexico containing forests, it includes the 2000-2012 percent change for the main MSPA forest categories:Core, Islet, Perforation and Edge. The other datasets can be merged to this file to have an spatial representation of the rest of the fragmentation categories, as well as geographic characteristics used in matching analyses.
DOI: 10.6084/m9.figshare.5547763.v1
title: Microlandscapes_MSPA.zip

description: Contains a shapefile with all the microlandscapes in Mexico containing forests, it includes the 2000-2012 percent change for the main MSPA forest categories:Core, Islet, Perforation and Edge. The other datasets can be merged to this file to have an spatial representation of the rest of the fragmentation categories, as well as geographic characteristics used in matching analyses.
DOI: 10.6084/m9.figshare.5547757
title: Datasets summarizing forest fragmentation patterns in Mexico

description: These are the tables summarizing forest fragmentation at the national level for Mexico between 2000 and 2012
DOI: 10.6084/m9.figshare.5547757.v1
title: Datasets summarized for each microlandscape and vegetation type

description: These are the tables summarizing forest fragmentation at the national level for Mexico between 2000 and 2012
DOI: 10.6084/m9.figshare.5547730
title: Dataset for: MAP6 interacts with Tctex1 and Cav2.2/N-type calcium channels to regulate calcium signaling in neurons

description: MAP6 proteins were first described as microtubule-stabilizing agents, whose properties were thought to be essential for neuronal development and maintenance of complex neuronal networks. However, deletion of all MAP6 isoforms in MAP6 KO mice does not lead to dramatic morphological aberrations of the brain but rather to alterations in multiple neurotransmissions and severe behavioral impairments. A search for protein partners of MAP6 proteins identified Tctex1 - a dynein light chain with multiple non-microtubule-related functions. The involvement of Tctex1 in calcium signaling led to investigate it in MAP6 KO neurons. In the present study, we show that functional Cav2.2/N-type calcium channels are deficient in MAP6 KO neurons, due to improper location. We also show that MAP6 proteins interact directly with both Tctex1 and the C-terminus of Cav2.2/N-type calcium channels. A balance of these two interactions seems to be crucial for MAP6 to modulate calcium signaling in neurons.
DOI: 10.6084/m9.figshare.5547730.v1
title: Dataset for: MAP6 interacts with Tctex1 and Cav2.2/N-type calcium channels to regulate calcium signaling in neurons

description: MAP6 proteins were first described as microtubule-stabilizing agents, whose properties were thought to be essential for neuronal development and maintenance of complex neuronal networks. However, deletion of all MAP6 isoforms in MAP6 KO mice does not lead to dramatic morphological aberrations of the brain but rather to alterations in multiple neurotransmissions and severe behavioral impairments. A search for protein partners of MAP6 proteins identified Tctex1 - a dynein light chain with multiple non-microtubule-related functions. The involvement of Tctex1 in calcium signaling led to investigate it in MAP6 KO neurons. In the present study, we show that functional Cav2.2/N-type calcium channels are deficient in MAP6 KO neurons, due to improper location. We also show that MAP6 proteins interact directly with both Tctex1 and the C-terminus of Cav2.2/N-type calcium channels. A balance of these two interactions seems to be crucial for MAP6 to modulate calcium signaling in neurons.
DOI: 10.6084/m9.figshare.5547667
title: Dataset for: The left supramarginal gyrus contributes to finger positioning for object use : A neuronavigated TMS study

description: In everyday actions, we grasp dozens of different manipulable objects in ways that accommodate their functional use. Neuroimaging studies showed that grasping objects in a way that is appropriate for their use involves a left-lateralized network including the supramarginal gyrus (SMG), the anterior intraparietal area (AIP) and the ventral premotor cortex (PMv). However, because previous works premised their conclusions on tasks requiring action execution, it has remained difficult to discriminate between the areas involved in specifying the position of fingers onto the object from those implementing the motor program required to perform the action. To address this issue, we asked healthy participants to make judgements about pictures of manipulable objects while repetitive transcranial magnetic stimulation (rTMS) was applied over the left SMG, AIP, PMv or, as a control, the Vertex. The participants were asked to name the part of the image where the thumb or the index finger was expected to contact the object during its normal utilization or where a given attribute of the same object was located. The two tasks were strictly identical in terms of visual display, working memory demands, and response requirements. Results showed that rTMS over SMG slowed down judgements of finger positions but not judgements of object attributes. Both types of judgements remained unaffected when rTMS was applied over AIP or PMv. This finding demonstrates that, within the parieto-frontal network dedicated to object use, at least the left SMG is involved in specifying the appropriate position of the thumb and index onto the object.
DOI: 10.17608/k6.auckland.5547631
title: Drawings of Feedback: Students in NZ

description: There are 193 drawings made by New Zealand primary, middle, and high school students when asked to draw a picture of feedback. This study builds on previous studies in which we asked students to draw pictures of assessment. <br>These files were analysed and described in a published article:Harris, L. R., Brown, G. T. L., & Harnett, J. (2014). Understanding classroom feedback practices: A study of New Zealand student experiences, perceptions, and emotional responses. <i>Educational Assessment, Evaluation and Accountability, 26</i>(2), 107-133. doi:10.1007/s11092-013-9187-5<br><br>An earlier version was presented as:Harris, L. R., Brown, G. T. L., & Harnett, J. (2012, April). <i>Student pictures of feedback: Feedback is for learning and from teachers.</i> Paper presented at the 2012 AERA Annual Meeting of the American Educational Research Association, Vancouver, BC.<br>
DOI: 10.17608/k6.auckland.5547655
title: Hong Kong Drawings of Assessment

description: This collection contains drawings created by Hong Kong University students concerning their perceptions of assessment. This work was done with Dr Zhenlin Wang with the assistance of Candy Tang. The work was funded by a Faculty Internal Research Grant. The work led directly to the publication of Brown, G. T. L., & Wang, Z. (2013). Illustrating assessment: How Hong Kong university students conceive of the purposes of assessment. <i>Studies in Higher Education, 38</i>(7), 1037-1057. doi:10.1080/03075079.2011.616955<br>Earlier versions were presented at conferences:<br>Brown, G. T. L, & Wang, Z. (2011, February). <i>HK University student conceptions of assessment: Similarities and differences to western higher education conceptions</i>. Paper presented at the annual meeting of the Comparative Education Society of Hong Kong, Hong Kong.<br>Brown, G. T. L., & Wang, Z. (2011, September). <i>A complex web of consequence, emotion, and agency: Hong Kong tertiary students’ drawings of assessment</i>. Paper presented to the Symposium on Assessment and Learner Outcomes 2011. Wellington, New Zealand.<br><br>Our joint work on this led to a day-long workshop on visual data analysis:Brown, G. T. L., & Wang, Z. (2011, May 21). <i>Visual data analysis workshop: 1. Theory of visual data collection and analysis; 2. Analysis of Discourse: Categories & Relationships; & 3. From visual data to a survey questionnaire.</i><b> </b>Daylong workshop and presentation to graduate students in the Faculty of Education, South China Normal University, Guangzhou, PRC.<br>
DOI: 10.6084/m9.figshare.5547667.v1
title: Dataset for: The left supramarginal gyrus contributes to finger positioning for object use : A neuronavigated TMS study

description: In everyday actions, we grasp dozens of different manipulable objects in ways that accommodate their functional use. Neuroimaging studies showed that grasping objects in a way that is appropriate for their use involves a left-lateralized network including the supramarginal gyrus (SMG), the anterior intraparietal area (AIP) and the ventral premotor cortex (PMv). However, because previous works premised their conclusions on tasks requiring action execution, it has remained difficult to discriminate between the areas involved in specifying the position of fingers onto the object from those implementing the motor program required to perform the action. To address this issue, we asked healthy participants to make judgements about pictures of manipulable objects while repetitive transcranial magnetic stimulation (rTMS) was applied over the left SMG, AIP, PMv or, as a control, the Vertex. The participants were asked to name the part of the image where the thumb or the index finger was expected to contact the object during its normal utilization or where a given attribute of the same object was located. The two tasks were strictly identical in terms of visual display, working memory demands, and response requirements. Results showed that rTMS over SMG slowed down judgements of finger positions but not judgements of object attributes. Both types of judgements remained unaffected when rTMS was applied over AIP or PMv. This finding demonstrates that, within the parieto-frontal network dedicated to object use, at least the left SMG is involved in specifying the appropriate position of the thumb and index onto the object.
DOI: 10.17608/k6.auckland.5547655.v1
title: Hong Kong Drawings of Assessment

description: This collection contains drawings created by Hong Kong University students concerning their perceptions of assessment. This work was done with Dr Zhenlin Wang with the assistance of Candy Tang. The work was funded by a Faculty Internal Research Grant. The work led directly to the publication of Brown, G. T. L., & Wang, Z. (2013). Illustrating assessment: How Hong Kong university students conceive of the purposes of assessment. <i>Studies in Higher Education, 38</i>(7), 1037-1057. doi:10.1080/03075079.2011.616955<br>Earlier versions were presented at conferences:<br>Brown, G. T. L, & Wang, Z. (2011, February). <i>HK University student conceptions of assessment: Similarities and differences to western higher education conceptions</i>. Paper presented at the annual meeting of the Comparative Education Society of Hong Kong, Hong Kong.<br>Brown, G. T. L., & Wang, Z. (2011, September). <i>A complex web of consequence, emotion, and agency: Hong Kong tertiary students’ drawings of assessment</i>. Paper presented to the Symposium on Assessment and Learner Outcomes 2011. Wellington, New Zealand.<br><br>Our joint work on this led to a day-long workshop on visual data analysis:Brown, G. T. L., & Wang, Z. (2011, May 21). <i>Visual data analysis workshop: 1. Theory of visual data collection and analysis; 2. Analysis of Discourse: Categories & Relationships; & 3. From visual data to a survey questionnaire.</i><b> </b>Daylong workshop and presentation to graduate students in the Faculty of Education, South China Normal University, Guangzhou, PRC.<br>
DOI: 10.6084/m9.figshare.5547628
title: Future of Pacific Salmon in the Face of Environmental Change: Lessons from One of the World's Remaining Productive Salmon Regions

description: Pacific salmon <i>Oncorhynchus</i> spp. face serious challenges from climate and landscape change, particularly in the southern portion of their native range. Conversely, climate warming appears to be allowing salmon to expand northwards into the Arctic. Between these geographic extremes, in the Gulf of Alaska region, salmon are at historically high abundances but face an uncertain future due to rapid environmental change. We examined changes in climate, hydrology, land cover, salmon populations, and fisheries over the past 30–70 years in this region. We focused on the Kenai River, which supports world-famous fisheries but where Chinook Salmon <i>O. tshawytscha</i> populations have declined, raising concerns about their future resilience. The region is warming and experiencing drier summers and wetter autumns. The landscape is also changing, with melting glaciers, wetland loss, wildfires, and human development. This environmental transformation will likely harm some salmon populations while benefiting others. Lowland salmon streams are especially vulnerable, but retreating glaciers may allow production gains in other streams. Some fishing communities harvest a diverse portfolio of fluctuating resources, whereas others have specialized over time, potentially limiting their resilience. Maintaining diverse habitats and salmon runs may allow ecosystems and fisheries to continue to thrive amidst these changes.
DOI: 10.6084/m9.figshare.5547622
title: Appendix 2.1: An updated infrageneric classification of the oaks

description: The Appendix includes the following information (<b>which may be subject to future updates</b>): (i) an overview of earlier systematic schemes for oaks (genera, subgenera, sections) in comparison to the new classification; (ii) diagnostic morphological<br>traits reported by earlier taxonomists extracted from the original literature; (iii) a comprehensive list of formerly and currently accepted species of oaks, compiled from the cited oak monographs and complemented by further data sources.<br><br>
DOI: 10.6084/m9.figshare.5547628.v1
title: Future of Pacific Salmon in the Face of Environmental Change: Lessons from One of the World's Remaining Productive Salmon Regions

description: Pacific salmon <i>Oncorhynchus</i> spp. face serious challenges from climate and landscape change, particularly in the southern portion of their native range. Conversely, climate warming appears to be allowing salmon to expand northwards into the Arctic. Between these geographic extremes, in the Gulf of Alaska region, salmon are at historically high abundances but face an uncertain future due to rapid environmental change. We examined changes in climate, hydrology, land cover, salmon populations, and fisheries over the past 30–70 years in this region. We focused on the Kenai River, which supports world-famous fisheries but where Chinook Salmon <i>O. tshawytscha</i> populations have declined, raising concerns about their future resilience. The region is warming and experiencing drier summers and wetter autumns. The landscape is also changing, with melting glaciers, wetland loss, wildfires, and human development. This environmental transformation will likely harm some salmon populations while benefiting others. Lowland salmon streams are especially vulnerable, but retreating glaciers may allow production gains in other streams. Some fishing communities harvest a diverse portfolio of fluctuating resources, whereas others have specialized over time, potentially limiting their resilience. Maintaining diverse habitats and salmon runs may allow ecosystems and fisheries to continue to thrive amidst these changes.
DOI: 10.6084/m9.figshare.5545711
title: Raw data of the study "Impact of insulin on primary arcuate neurons culture is dependent on early-postnatal nutritional status and neuronal subpopulation"

description: Raw data of the study "Impact of insulin on primary arcuate neurons culture is dependent on early-postnatal nutritional status and neuronal subpopulation" in PlosOne 2018<br>
DOI: 10.6084/m9.figshare.5545696
title: Handling qualitative research outcomes

description: Handling qualitative research outcomes
DOI: 10.6084/m9.figshare.5545711.v1
title: Raw data of the study "Impact of insulin on primary arcuate neurons culture is dependent on early-postnatal nutritional status and neuronal subpopulation"

description: Raw data of the study "Impact of insulin on primary arcuate neurons culture is dependent on early-postnatal nutritional status and neuronal subpopulation" in PlosOne 2018<br>
DOI: 10.6084/m9.figshare.5545696.v1
title: Handling qualitative research outcomes

description: Handling qualitative research outcomes
DOI: 10.6084/m9.figshare.5545645
title: Influence of flow velocity on tsunami loss estimation

description: Figure 1. An example of synthesised earthquake source modelFigure 3. Fragility considering velocity for RC structures (left are fragility surfaces for plain coast and right are fragility surfaces for ria coast)Figure 8. Stochastic tsunami hazard maps for region R2 in Sendai: (a-c) inundation depth; and (d-f) velocityFigure 14. Stochastic tsunami hazard maps for region R1 in Onagawa: (a-c) inundation depth; and (d-f) flow velocity
DOI: 10.6084/m9.figshare.5545492
title: Aptamer selection against vanillin / A. Kuznetsov et al

description: Datasets for original paper "Aptamer selection against vanillin for biosensor fabrication based on aptamer and ion-sensitive field-effect transistor" <br>
DOI: 10.6084/m9.figshare.5545492.v1
title: Aptamer selection against vanillin / A. Kuznetsov et al

description: Datasets for original paper "Aptamer selection against vanillin and biosensor based on aptamer and ion-sensitive field-effect transistor" <br>
DOI: 10.6084/m9.figshare.5545327
title: Phylogeny of Enterococcus faecium

description: A tree file [parsnp-rec-E745-BMCG.tree] in Newick format , resulting from a core-genome sequence-alignment [parsnp.xmfa] generated through parSNP of 73 <i>E. faecium </i>genome sequences.
DOI: 10.6084/m9.figshare.5545195
title: Supplementary Files S1-S2

description: Supplementary Files of the article "<b>Oral microbiomes from hunter-gatherers and traditional farmers reveal shifts</b><b> in commensal balance and pathogen load </b><b>linked</b><b> to diet</b>"<br>Sup. File S1: copy (blank) of the Participant Information Sheet and an English version of the Participant Consent Form. (PDF file)<br>Sup. File S2: Detail of read counts for InterPro terms associated to pantothenate, coenzyme A and urease pathways, by subsistence strategy and by taxon (as determined by Kraken taxonomic classification of metagenomi reads). (PDF file)
DOI: 10.6084/m9.figshare.5545267.v1
title: supplement information-tables.xlsx

description: Table 1 presents the raw data on rodent captured during 4 years. Their abundance is evaluated through the trapping success, which is based on the numbers by trapping night.<br><br>Table 2 presents the bait consumption in grammes per day (J1 to J31) during year 3. <br><br>Table 3 presents the bait consumption in grammes per day (J1 to J31) during year 4.
DOI: 10.6084/m9.figshare.5545147
title: Revision notes for the first pre-registration update for Does prosocial behavior increase well-being in controlled experiments systematic review and a meta-analysis

description: Revision notes for the first pre-registration update for Does prosocial behavior increase well-being in controlled experiments systematic review and a meta-analysis
DOI: 10.6084/m9.figshare.5545165
title: EPOCH output files

description: EPOCH input decks and output files for particle-in-cell simulations in 1, 2 and 3 dimensions.<br>
DOI: 10.6084/m9.figshare.5545195.v1
title: Supplementary Files S1-S2

description: Supplementary Files of the article "<b>Oral microbiomes from hunter-gatherers and traditional farmers reveal shifts</b><b> in commensal balance and pathogen load </b><b>linked</b><b> to diet</b>"<br>Sup. File S1: copy (blank) of the Participant Information Sheet and an English version of the Participant Consent Form. (PDF file)<br>Sup. File S2: Detail of read counts for InterPro terms associated to pantothenate, coenzyme A and urease pathways, by subsistence strategy and by taxon (as determined by Kraken taxonomic classification of metagenomi reads). (PDF file)
DOI: 10.6084/m9.figshare.5545159
title: Evidence from Australian mesic zone dung beetles supports their Gondwanan origin and Mesozoic diversification of the Scarabaeinae. Supplemental Material

description: The evolution of dung beetles remains contentious with two hypotheses reflecting Cretaceous and Paleo­gene origins driven by different methods. We explore biogeographic evidence and phylogeographic origins against vicariance and dispersal scenarios that attribute to the four elements of the Australian fauna using a multi-gene approach. Maximum-likelihood and Bayesian analyses supported the Australasian clade, com­posed of almost all Australian, New Caledonian and New Zealand endemic genera (to the exclusion of <i>Bo­letoscapter</i>). Two Australian lineages with east-west splits and few lineages with restricted, non-overlapping distrbution were identified, and biogeography models provided evidence that vicariance and founder event speciation are important processes in the diversification of Australasian scarabaeines. Our phylogenetic results are largely congruent with a mid-Cretaceous origin of the Australasian clade, the tectonic history of Gondwanaland and climatic history of the Australian continent, and provide compelling evidence that Australian dung beetles are a relictual fauna whose history is linked to mesic zone fragmentation.
DOI: 10.6084/m9.figshare.5545147.v1
title: Revision notes for the first pre-registration update for Does prosocial behavior increase well-being in controlled experiments systematic review and a meta-analysis

description: Revision notes for the first pre-registration update for Does prosocial behavior increase well-being in controlled experiments systematic review and a meta-analysis