cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7404384
title: Global groundwater recharge estimates

description: Groundwater recharge estimates have been presented in Berghuijs et al. (2022). The estimates exclude regions with mean temperatures below −2°C and regions with aridity below 1. The estimates consist of total groundwater recharge (units mm per year) and the fraction of precipitation becoming groundwater recharge (dimensionless).
description: {"references": ["Berghuijs, W. R.,\u00a0\u00a0Luijendijk, E.,\u00a0\u00a0Moeck, C.,\u00a0\u00a0van der Velde, Y., &\u00a0\u00a0Allen, S. T.\u00a0(2022).\u00a0\u00a0Global recharge data set indicates strengthened groundwater connection to surface fluxes.\u00a0Geophysical Research Letters,\u00a049, e2022GL099010.\u00a0https://doi.org/10.1029/2022GL099010"]}
DOI: 10.5281/zenodo.7938267
title: River Sediment Database (RivSed)

description: The River Sediment Database (RivSed) database contains surface suspended sediment concentrations (SSC) derived from Landsat 5, 7, and 8 Level 1 Collection 1 surface reflectance from all rivers in the contiguous USA that are ~60 meters wide or greater. SSC represent spatially integrated "reach" median concentrations over the footprint of NHDPlusV2 centerlines where high quality river water pixels were detected within each Landsat image from 1984-2018. This is built in the River Surface Reflectance database (RiverSR) also in Zenodo (Gardner et al,. 2020 <em>Geophysical Research Letters</em>). The paper associated with RivSed: <strong>Gardner, J., Pavelsky, T. M., Topp, S., Yang, X., Ross, M. R., & Cohen, S. (2023). Human activities change suspended sediment concentration along rivers. <em>Environmental Research Letters. </em>https://iopscience.iop.org/article/10.1088/1748-9326/acd8d8</strong> <strong>Files:</strong> 1) Metadata (riverSed_v1.0_metadata.pdf): Description of all data files associated with this repository. 2) RiverSed (RiverSed_USA_v1.1.txt). Table of SSC and associated data that is joinable to nhdplusv2_modified_v1.0.shp based on the "ID" column and to the original NHDplusV2 flowlines with the "COMID" column. 3) Shapefile of river centerlines to which the reflectance data can be attached (nhdplusv2_modified_v1.0.shp). 4) Shapefile of the reach polygons associated with each nhdplusv2_modified reach. (nhdplusv2_polygons_v1.0.shp). 5) The look up table for reach IDs of original (COMID) and modified (ID) NHDplusV2 centerlines. (COMID_ID.csv). Short reaches were joined together to optimize for remote sensing data collection and make more consistent reach lengths. 6) SSC-Landsat matchup database with extended metadata on locations and in-situ data derived from Aquasat (Ross et al., 2019) (Aquasat_TSS_v1.1.csv) 7) The final training data used to build the xgboost machine learning model (train_clean_xgb_v1.1.csv) 8) The xgboost model that can make SSC predictions over inland waters in USA using Landsat bands/band combinations (finalmodel_xgb_v1.1.rds and .RData). The model can only be loaded in R for now.
DOI: 10.5287/bodleian:bej7r6y0d
title: Data underpinning paper group-personalized regression models for prediction of mental health scores from objective mobile phone data streams
DOI: 10.6084/m9.figshare.19341533
title: Temperature-Dependent Thermal IR Optical Constants of Water from Data Archaeology (v1.0)

description: <b>Temperature-Dependent Thermal IR Optical Constants of Water from Data Archaeology</b> <b>(v1.0)</b><br><br>OVERVIEW:<br>These files contain temperature-dependent thermal IR optical constants of water derived from a data archaeology and rescue of reflectance data originally published by <i>Pinkley et al.</i> (1977).<br>The six (6) NetCDF files contain lookup tables (LUT) of the temperature-dependent optical constants for each of the 6 previously published datasets referenced, namely <i>Hale & Querry,</i> (25<sup>o</sup>C, 298 K); <i>Bertie & Lan </i>(25<sup>o</sup>C, 298 K); <i>Downing & Williams </i>(27<sup>o</sup>C, 300 K); <i>Pontier & Dechambenoy</i> (27<sup>o</sup>C, 300 K); <i>Segelstein</i> (30<sup>o</sup>C, 303 K); and<i> Wieliczka et al. </i>(30<sup>o</sup>C, 303 K).<br><br>These data are described in the companion paper "Temperature-dependent optical constants of water in the thermal infrared derived from data archaeology" (<i>Nalli et al.,</i> <i>Optics Continuum,</i> 2022, doi:10.1364/OPTCON.450833).<br><br>NETCDF VARIABLE DEFINITIONS:<br><i><b>T:</b></i> Temperature (K) [1 x <i>n</i><sub>temp</sub>]<br><i><b>v:</b></i> Wavenumber (cm<sup>-1</sup>) [<i>n</i><sub>chan</sub> x 1]<br><i><b>n:</b></i> Refractive Index, Re(<i>N<sub>v</sub></i>) [<i>n</i><sub>chan</sub> x <i>n</i><sub>temp</sub>]<br><i><b>k:</b></i> Extinction Coefficient, Im(<i>N<sub>v</sub></i>) [<i>n</i><sub>chan</sub> x <i>n</i><sub>temp</sub>]<br><b>d<i>n:</i></b> Friedman Salinity Correction for <i>n</i> [<i>n</i><sub>chan</sub> x 1]<br><b>d<i>k:</i></b> Friedman Salinity Correction for <i>k</i> [<i>n</i><sub>chan</sub> x 1]<br>CONTACT<b>:</b><br>Dr. Nicholas R. Nalli<br>IMSG, Inc. at NOAA/NESDIS/STAR<br>NCWCP E/RA2<br>5830 University Research Court #2841<br>College Park, MD 20740-3818 USA<br>E-mail: Nick.Nalli@noaa.gov<br>
DOI: 10.6084/m9.figshare.21618636.v1
title: Psychtoolbox data

description: This folder contains psychtoolbox data for all 34 participants. <br> Each .mat file contains three structure data as followings: 'cfg' structure is the configuration of the experiment presentation. 'Para' structure contains all parameters for the study. The field SentMat is the sentences matrix that is shown to the participant. The field CondMat is the condition matrix, the first column is the position of the target word (also the flickering word) in a given sentence; the second column is the condition index for a given sentence, 11--incongruent target, 12--congruent target. The field FixDuration is the duration of cross-fixation in the baseline period, unit in second. 'Result' structure is the outputs from psychtoolbox. The fields FixationON, StartBoxON, SentenceON, and ITION are the time points when triggers 1, 2, 4, and 16 are sent to both the MEG and EyeLink system. Those triggers can be used to align the clocks in the experiment presentation computer, MEG data acquisition computer, and the EyeLink computer. The fields RT and CORR are the reaction time (unit in second) and accuracy of the responses to the comprehension question (please note that only 12% of the sentences were followed by a question). The field WordLocation contains the coordinates for all the words that are presented on the screen -- [x_start, y_start, x_end, y_end], unit in pixel. Please note that we used the rapid mode of PROPixx projector, where the coordinates here are just half of the coordinates on the participant's screen (also the Eyelink coordinate). Thus, <strong>please multiply these coordinates by 2 when you locate eye movement samples to a given word.</strong>
DOI: 10.6084/m9.figshare.25495030
title: Supplementary Material for: Regulation of the MCHergic Neural Circuit to Dorsal Raphe Nucleus on Emotion-Related Behaviors and Intestinal Dysfunction in Mice Model of Irritable Bowel Syndrome with Diarrhea

description: Abstract
Introduction:
Irritable bowel syndrome with diarrhea (IBS-D) is frequently accompanied by depression and anxiety, resulting in a reduced quality of life and increased medical expenditures. Although psychological factors are known to play an important role in the genesis and development of IBS-D, an understanding of the central neural control of intestinal dysfunction remains elusive. Melanin-concentrating hormone (MCH) is a gut–brain peptide involved in regulating feeding, sleep–wake rhythms, and emotional states. 
Methods: 
This study investigated the regulation of the MCHergic neural circuit from the lateral hypothalamic area (LHA) to the dorsal raphe nucleus (DRN) on anxiety- and depression-like behaviors, intestinal motility, and visceral hypersensitivity in a mice model of IBS-D. The models of IBS-D were prepared by inducing chronic unpredictable mild stress (CUMS).
Results: 
Chemogenetic activation of the MCH neurons in the LHA could excite serotonin (5-HT) neurons in the DRN and induce anxiety- and depression-like behaviors and IBS-D-like symptoms, which could be recovered by microinjection of the MCH receptor antagonist SNAP94847 into the DRN. The mice model of IBS-D showed a reduction of 5-HT and brain-derived neurotrophic factor (BDNF) expression in the DRN, while an elevation of 5-HT and BDNF was observed in the colon through immunofluorescent staining, ELISA, and western blot analysis. SNAP94847 treatment in the DRN alleviated anxiety- and depression-like behaviors, improved intestinal motility, and alleviated visceral hypersensitivity responses by normalizing the 5-HT and BDNF expression in the DRN and colon. 
Conclusion: 
This study suggests that the activation of MCH neurons in the LHA may induce IBS-D symptoms via the DRN and that the MCH receptor antagonist could potentially have therapeutic effects.
DOI: 10.7483/opendata.atlas.uxkx.txbn
title: Datasets used to train the Generative Adversarial Networks used in ATLFast3
DOI: 10.15468/dl.2j98u2
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.405435 -33.795315, 148.40768 -33.795315, 148.40768 -33.793069, 148.405435 -33.793069, 148.405435 -33.795315)), ((148.405435 -33.795315, 148.398697 -33.795315, 148.398697 -33.802053, 148.396451 -33.802053, 148.396451 -33.80879, 148.403189 -33.80879, 148.403189 -33.806544, 148.405435 -33.806544, 148.405435 -33.795315)))"
 ]
}

 The dataset includes 90 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046321-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e7apxk
title: Occurrence Download

description: A dataset containing 631 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.13_1",
 "TaxonKey is one of (Adiantum nelumboides X.C.Zhang, Dendrobium flexicaule Z.H.Tsi, S.C.Sun & L.G.Xu, Paeonia qiui Y.L.Pei & D.Y.Hong, Paeonia rockii (S.G.Haw & Lauener) T.Hong & J.J.Li ex D.Y.Hong, Ceratopteris chingii Y.H.Yang & Jun H.Yu, Ceratopteris thalictroides (L.) Brongn., Brasenia schreberi J.F.Gmel., Ottelia alismoides (L.) Pers., Paris bashanensis F.T.Wang & Tang, Paris delavayi Franch., Paris fargesii Franch., Paris polyphylla Sm., Paris polyphylla var. alba H.Li & R.J.Mitchell, Paris polyphylla var. chinensis (Franch.) H.Hara, Paris polyphylla var. latifolia F.T.Wang & C.Yu Chang, Paris polyphylla var. stenophylla Franch., Paris thibetica Franch., Paris nitida G.W.Hu, Zhi Wang & Q.F.Wang, Paris qiliangiana H.Li, Jun Yang bis & Y.H.Wang, Paris polyphylla var. yunnanensis (Franch.) Hand.-Mazz., Cardiocrinum cathayanum (E.H.Wilson) Stearn, Fritillaria monantha Migo, Fritillaria taipaiensis P.Y.Li, Lilium fargesii Franch., Bletilla striata (Thunb.) Rchb.f., Dendrobium hancockii Rolfe, Dendrobium lohohense Tang & F.T.Wang, Dendrobium moniliforme (L.) Sw., Dendrobium nobile Lindl., Gastrodia elata Blume, Gymnadenia orchidis Lindl., Coptis chinensis Franch., Nelumbo nucifera Gaertn., Paeonia cathayana D.Y.Hong & K.Y.Pan, Paeonia ostii T.Hong & J.X.Zhang, Paeonia ×baokangensis Z.L.Dai & T.Hong, Myriophyllum ussuriense (Regel) Maxim., Glycine soja (L.) Merr., Prunus kansuensis Rehder, Morus wittiorum Hand.-Mazz., Trapa incisa Siebold & Zucc., Citrus cavaleriei H.Lév., Fagopyrum dibotrys (D.Don) H.Hara, Camellia sinensis (L.) Kuntze, Actinidia arguta (Siebold & Zucc.) Planch. ex Miq., Actinidia chinensis Planch., Actinidia macrosperma C.F.Liang, Echinocodon draco (Pamp.) D.Y.Hong, Panax bipinnatifidus Seem., Panax vietnamensis Ha & Grushv., Panax japonicus (T.Nees) C.A.Mey., Changium smyrnioides H.Wolff, Chuanminshen violaceum M.L.Sheh & R.H.Shan)"
 ]
}

 The dataset includes 631 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046322-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7yg2g
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.39196 -33.811036, 148.39196 -33.817773, 148.396451 -33.817773, 148.396451 -33.815527, 148.398697 -33.815527, 148.398697 -33.811036, 148.39196 -33.811036))"
 ]
}

 The dataset includes 19 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046323-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13192146
title: Finow Stern-Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.15468/dl.zzw3wp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.367256 -33.826756, 148.367256 -33.831248, 148.373993 -33.831248, 148.373993 -33.826756, 148.367256 -33.826756))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046324-240626123714530/datasets/export for details.
DOI: 10.5281/zenodo.13192090
title: Fiddichow Adler-Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963 [Funktion: Im Findbuch anzeigen]

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.15468/dl.adc2h7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.973622 -33.831248, 148.973622 -33.83574, 148.980359 -33.83574, 148.980359 -33.831248, 148.973622 -33.831248))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046325-240626123714530/datasets/export for details.
DOI: 10.34943/bac35831-7a22-4ee1-bcbb-bde67427dd63
title: Baynes Sound Junction Box Deployed 2024-07-30

description: The Signal Combiner Unit V2 09 was deployed on 2024-07-30 at Baynes Sound. Baynes Sound is located between Denman Island and Vancouver Island. This device is a Junction Box. Junction Boxes supply power and communications to deployed instruments. Junction boxes have a number of serial and ethernet ports, including 400V ethernet ports that enable connections to other junction boxes and high-voltage instruments. Junction boxes can convert high voltages to lower voltages (15V, 24V or 48V) required by many instruments. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/306cfed7-78ae-4791-8def-36528523a816
title: Baynes Sound Conductivity Temperature Depth Deployed 2024-07-30

description: The Sea-Bird SeaCAT SBE19plus V2 6001 was deployed on 2024-07-30 at Baynes Sound. Baynes Sound is located between Denman Island and Vancouver Island. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/1b4b6b44-1b40-449c-a4ea-8cc73528d8c0
title: Baynes Sound Junction Box Deployed 2024-07-30

description: The Signal Combiner Unit V2 07 was deployed on 2024-07-30 at Baynes Sound. Baynes Sound is located between Denman Island and Vancouver Island. This device is a Junction Box. Junction Boxes supply power and communications to deployed instruments. Junction boxes have a number of serial and ethernet ports, including 400V ethernet ports that enable connections to other junction boxes and high-voltage instruments. Junction boxes can convert high voltages to lower voltages (15V, 24V or 48V) required by many instruments. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/56dc6804-6015-4761-be89-bf542256a5f0
title: Baynes Sound Oxygen Sensor Deployed 2024-07-30

description: The Sea-Bird SBE 63 Dissolved Oxygen Sensor 630636 was deployed on 2024-07-30 at Baynes Sound. Baynes Sound is located between Denman Island and Vancouver Island. This device is a Oxygen Sensor. Oxygen sensors measure dissolved oxygen concentration in seawater. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/9d3d1354-f6cf-4a18-99c9-7f09a9efa5c2
title: Baynes Sound Carbon Dioxide Sensor Deployed 2024-07-30

description: The Pro-Oceanus CO2-Pro CV (SN 40-717-75) was deployed on 2024-07-30 at Baynes Sound. Baynes Sound is located between Denman Island and Vancouver Island. This device is a Carbon Dioxide Sensor. Carbon Dioxide sensors monitor CO2 levels in the ocean. CO2 sensors measure the partial pressure, or the concentration of dissolved CO2 in seawater by a variety of techniques. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/5169a9d8-7dd0-4365-9d1b-f7e0f2588eb2
title: Baynes Sound Carbon Dioxide Sensor Deployed 2024-07-30

description: The Pro-Oceanus CO2-Pro CV (SN 34-216-75) was deployed on 2024-07-30 at Baynes Sound. Baynes Sound is located between Denman Island and Vancouver Island. This device is a Carbon Dioxide Sensor. Carbon Dioxide sensors monitor CO2 levels in the ocean. CO2 sensors measure the partial pressure, or the concentration of dissolved CO2 in seawater by a variety of techniques. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/764cf036-d5d1-41d6-a46a-2fda2630011a
title: Baynes Sound Conductivity Temperature Depth Deployed 2024-07-30

description: The Sea-Bird SeaCAT SBE19plus V2 7768 was deployed on 2024-07-30 at Baynes Sound. Baynes Sound is located between Denman Island and Vancouver Island. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/c7cdf775-c9e4-43ae-a436-b4b403c52376
title: Baynes Sound Oxygen Sensor Deployed 2024-07-30

description: The Aanderaa Optode 4531A (S/N 2062) was deployed on 2024-07-30 at Baynes Sound. Baynes Sound is located between Denman Island and Vancouver Island. This device is a Oxygen Sensor. Oxygen sensors measure dissolved oxygen concentration in seawater. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.15468/dl.9uastx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.203313 -33.837985, 148.203313 -33.840231, 148.205558 -33.840231, 148.205558 -33.837985, 148.203313 -33.837985))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046326-240626123714530/datasets/export for details.
DOI: 10.34943/b76aaa64-c917-4a47-8b79-0e910e35b1e9
title: Baynes Sound Oxygen Sensor Deployed 2024-07-30

description: The Sea-Bird SBE 63 Dissolved Oxygen Sensor 631478 was deployed on 2024-07-30 at Baynes Sound. Baynes Sound is located between Denman Island and Vancouver Island. This device is a Oxygen Sensor. Oxygen sensors measure dissolved oxygen concentration in seawater. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/4e023cde-d96d-495d-9fa1-b40ec71efbb1
title: Baynes Sound Junction Box Deployed 2024-07-30

description: The Signal Combiner Unit V2 08 was deployed on 2024-07-30 at Baynes Sound. Baynes Sound is located between Denman Island and Vancouver Island. This device is a Junction Box. Junction Boxes supply power and communications to deployed instruments. Junction boxes have a number of serial and ethernet ports, including 400V ethernet ports that enable connections to other junction boxes and high-voltage instruments. Junction boxes can convert high voltages to lower voltages (15V, 24V or 48V) required by many instruments. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.