cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5848050
title: Physical oceanography for fur seal movement analysis

description: NetCDF files for surface wind, geostrophic current, and sea surface temperature in the North Pacific, fall/winter 2005-2006
DOI: 10.6084/m9.figshare.5848050.v1
title: Oceanography variables for fur seal movement analysis

description: NetCDF files for surface wind, geostrophic current, and sea surface temperature in the North Pacific, fall/winter 2005-2006
DOI: 10.6084/m9.figshare.5848020
title: Pups_2005.csv

description: Northern fur seal pup telemetry data from fall 2005, Bering Sea Alaska
DOI: 10.6084/m9.figshare.5848020.v1
title: Pups_2005.csv

description: Northern fur seal pup telemetry data from fall 2005, Bering Sea Alaska
DOI: 10.6084/m9.figshare.5848017
title: mdl_hs.m

description: Analysis and control of the dynamical response of a higher order drifting oscillator
DOI: 10.6084/m9.figshare.5848017.v1
title: mdl_hs.m

description: Analysis and control of the dynamical response of a higher order drifting oscillator
DOI: 10.6084/m9.figshare.5847963
title: Supplemental_Material_FoV

description: This document contains four tables which are four design examples used in our paper titled as "Nonconvex field of view cameras using monocentric multiscale design". The first table shows prescription of a ring FoV MMS lens, the second is prescription of multifocal MMS lens design, the third one shows MTF curves of the multifocal lens design, and the final one shows prescription of 360 horizontal FoV MMS lens with interleaving strategy.
DOI: 10.6084/m9.figshare.5847963.v1
title: Supplemental_Material_nonconvex_FoV

description: This document contains four tables which are four design examples used in our paper titled as "Nonconvex field of view cameras using monocentric multiscale design". The first table shows prescription of a ring FoV MMS lens, the second is prescription of multifocal MMS lens design, the third one shows MTF curves of the multifocal lens design, and the final one shows prescription of 360 horizontal FoV MMS lens with interleaving strategy.
DOI: 10.6084/m9.figshare.5847957
title: IonTorrent_Raw_FASTQ

description: Data are raw sequencing fastq files from ION Torrent PGM, used in manuscript MEN12770, accepted in Molecular Ecology Resources on January 30, 2018. Article DOI: 10.1111/1755-0998.12770<br>
DOI: 10.6084/m9.figshare.5847951
title: MiSeq_Raw_FASTQ

description: Files are raw paired-end sequences files from Illumina MiSeq. Sample indexes and adaptors were removed during demultiplexing on the machine. Data were used in manuscript MEN12770, accepted in Molecular Ecology Resources on January 30, 2018. Article DOI: 10.1111/1755-0998.12770
DOI: 10.6084/m9.figshare.5847951.v1
title: MiSeq_Raw_FASTQ

description: Files are raw paired-end sequences files from Illumina MiSeq. Sample indexes and adaptors were removed during demultiplexing on the machine. Data were used in manuscript MEN12770, accepted in Molecular Ecology Resources on January 30, 2018. Article DOI: 10.1111/1755-0998.12770
DOI: 10.6084/m9.figshare.5847933
title: Imaging Flow Cytometry Dataset For Aged Buccal, Contact Epithelial and Vaginal Cells

description: Buccal and contact samples were obtained pursuant to VCU-IRB approved protocol ID#HM20000454_CR3. The ten volunteers for buccal samples were asked to swab the inside of cheek for 30 seconds. Swabs were left to dry for 1 hour to 6 days. For contact samples, ten volunteers (six of whom were buccal cell donors) were asked to hold/rub a conical tube (P/N 229421; Celltreat Scientific) for five minutes to deposit cells. Tubes were left out for 24 hours to 5 days to dry before collecting cells. Cells were collected from the surface with 1 sterile, pre-wetted swab, and 1 sterile, dry swab. Ten vaginal samples were obtained pursuant to VCU-IRB approved protocol ID#HM20002931_Ame2. Volunteers were asked to swab the inside of the vaginal cavity, and swabs were dried and stored at room temperature until analysis. Storage times ranged from 48 hours to approximately eight weeks. Swabs were eluted in 1 mL of 1x Cell Staining Buffer (P/N 420201; Biolegend), and gently vortexed for 10 seconds. Samples were centrifuged at 1500 × g at 4°C for 5 minutes. The supernatant was discarded, and the cell pellets were dissolved in 100 uL of 1x Cell Staining Buffer for imaging flow cytometry. <br>All samples were analyzed using an Amnis® Imagestream X Mark II (EMD Millipore, Burlington MA) equipped with 405nm, 488nm, 561nm, and 642nm lasers. Laser voltages for all tests were set at 120mW, 100mW, 100mW and 150mW, respectively. Images of individual events were captured in five detector channels labeled: 1 (430-505nm), 2 (505-560nm), 3 (560-595nm), 5 (640-745nm), and 6 (745-780nm). Channel 4 was used to capture Brightfield images. Magnification was set at 40x and autofocus was enabled so that the focus varied with cell size. <br>
DOI: 10.6084/m9.figshare.5847699
title: Mechanism underlying rapid responses to boron deprivation in Arabidopsis roots

description: Transferring hydroponically grown Arabidopsis plants (<i>Arabidopsis thaliana</i> L.) to boron (B)-free medium kills the cells in root tips within an hour. To understand the mechanism underlying the induced rapid cell death, the Arabidopsis response to B deprivation was characterized using inhibitors of presumably involved cellular processes. The results suggest that stretching of the plasma membrane and the influx of calcium ions through mechanosensitive channels triggered the responses and that reactive oxygen species were overproduced under B-deprived condition. In addition, nitric oxide was observed to be involved in cell death, suggesting that Arabidopsis root cells undergo programmed cell death upon B deprivation. RNA sequencing analysis revealed that B deprivation induced transcriptome changes that resembled pathogen-induced responses. In summary, we speculate that B deprivation induces hypersensitive responses in Arabidopsis roots as a response to defective cell wall structures.
DOI: 10.6084/m9.figshare.5847699.v1
title: Mechanism underlying rapid responses to boron deprivation in Arabidopsis roots

description: Transferring hydroponically grown Arabidopsis plants (<i>Arabidopsis thaliana</i> L.) to boron (B)-free medium kills the cells in root tips within an hour. To understand the mechanism underlying the induced rapid cell death, the Arabidopsis response to B deprivation was characterized using inhibitors of presumably involved cellular processes. The results suggest that stretching of the plasma membrane and the influx of calcium ions through mechanosensitive channels triggered the responses and that reactive oxygen species were overproduced under B-deprived condition. In addition, nitric oxide was observed to be involved in cell death, suggesting that Arabidopsis root cells undergo programmed cell death upon B deprivation. RNA sequencing analysis revealed that B deprivation induced transcriptome changes that resembled pathogen-induced responses. In summary, we speculate that B deprivation induces hypersensitive responses in Arabidopsis roots as a response to defective cell wall structures.
DOI: 10.6084/m9.figshare.5847678
title: Evaluating the effects of alternate wetting and drying (AWD) on methane and nitrous oxide emissions from a paddy field in Thailand

description: Alternate wetting and drying (AWD) is a water-saving irrigation technique in a paddy field that can reduce the emission of methane, a potent greenhouse gas (GHG). It is being adopted to Asian countries, but different results are reported in literatures on methane, nitrous oxide emission, and rice productivity under AWD. Therefore, the local feasibility needs to be investigated before its adoption by farmers. The current study carried out a 3-year experiment in an acid sulfate paddy field in Prachin Buri, Thailand. During five crops (3 dry and 2 wet seasons), three treatments of water management were compared: continuous flooding (CF), flooding whenever surface water level declined to 15 cm below the soil surface (AWD), and site-specific AWD (AWDS) that weakened the criteria of soil drying (AWDS). Methane and nitrous oxide emissions were measured by a closed chamber method. Rice grain yield did not significantly (<i>p</i>
DOI: 10.6084/m9.figshare.5847678.v1
title: Evaluating the effects of alternate wetting and drying (AWD) on methane and nitrous oxide emissions from a paddy field in Thailand

description: Alternate wetting and drying (AWD) is a water-saving irrigation technique in a paddy field that can reduce the emission of methane, a potent greenhouse gas (GHG). It is being adopted to Asian countries, but different results are reported in literatures on methane, nitrous oxide emission, and rice productivity under AWD. Therefore, the local feasibility needs to be investigated before its adoption by farmers. The current study carried out a 3-year experiment in an acid sulfate paddy field in Prachin Buri, Thailand. During five crops (3 dry and 2 wet seasons), three treatments of water management were compared: continuous flooding (CF), flooding whenever surface water level declined to 15 cm below the soil surface (AWD), and site-specific AWD (AWDS) that weakened the criteria of soil drying (AWDS). Methane and nitrous oxide emissions were measured by a closed chamber method. Rice grain yield did not significantly (<i>p</i>
DOI: 10.6084/m9.figshare.5847654
title: Effects of alternate wetting and drying technique on greenhouse gas emissions from irrigated rice paddy in Central Luzon, Philippines

description: Alternate wetting and drying (AWD) technique has been widely reported to reduce methane (CH<sub>4</sub>) emission from irrigated rice paddies. However, little is known about its feasibility in an environment that has distinct weather conditions involving tropical wet season (WS). To investigate the AWD’s feasibility in terms of reducing greenhouse gas (GHG) emissions both in dry season (DS) and WS, 3-year field experiments were conducted in Central Luzon, Philippines. Three treatments of water management were continuous flooding (CF), flooding when surface water level naturally declines to 15 cm below the soil surface (AWD), and site-specific AWD that modified the criteria of soil drying (AWDS). Methane and nitrous oxide (N<sub>2</sub>O) fluxes were measured using a closed chamber method, and the global warming potential (GWP) of the two GHGs was calculated. Rice grain yield did not significantly differ among treatments. In accordance with the previous findings, the seasonal total CH<sub>4</sub> emission was significantly greater in WS than in DS. The effect of treatment was significant, but the reduction rate by AWD was just 1.7% compared to CF. The seasonal total N<sub>2</sub>O emission was significantly affected by cropping season and treatment. The AWD increased the N<sub>2</sub>O emission by 97%, especially in DS. The resultant GWP did not significantly differ among three treatments. The results indicate that the AWD and AWDS with the current settings were insufficient to reduce the annual GHG emissions in this site. However, fragmentary results obtained in the last DS suggest that an earlier rice residue incorporation and keeping dry soil conditions in the preceding fallow season is effective in reducing CH<sub>4</sub> emission in combination with an earlier implementation of AWD.
DOI: 10.5519/qd.xyapmfuy
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2 records)
DOI: 10.7910/dvn/8nel7b/3gafzp
title: POPPA_Codebook_Feb20.pdf

description: Codebook of the expert survey
DOI: 10.17632/dj4ybp77jw.2
title: Concatenated protein gene sequences of 183 Clonorchis sinensis specimens

description: This data set contains aligned concatenated protein gene sequences of 183 Clonorchis sinensis (phylum Platyhelminthes; class Trematoda; family Opisthorchiidae) specimens. The alignment includes polymorphic positions represented by IUPAC ambiguity characters; this polymorphism likely represents heteroplasmy as a result of multiple, distinct mitochondrial genomes being present within an individual worm. Sequence names correspond to specimen nos.
DOI: 10.5281/zenodo.3672783
title: Dataset of Paper "Enhanced numerical simulation of photocatalytic reactors with an improved solver for the radiative transfer equation"

description: Dataset of Paper "Enhanced numerical simulation of photocatalytic reactors with an improved solver for the radiative transfer equation": - Data of the incident radiation profiles in the annular reactor. - Average and net values of main radiation magnitudes in the tubular reactor at different photocatalyst concentration
DOI: 10.5519/qd.n0ey3516
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (10631 records)
DOI: 10.5257/unesco/scn/2019-06
title: Research and Experimental Development Statistics (June 2019 Edition)

description: Studies have found that every dollar invested in R generates nearly two dollars in return. While the rate will vary, R is an important driver of economic growth. To seize this potential, governments need reliable and precise data. In response, the UIS produces a wide range of indicators on the human and financial resources invested in R for countries at all stages of development.
DOI: 10.17632/38kf5yw7gk.1
title: Late ERP amplitude for self-face perception positively associated with heartbeat perception accuracy

description: The repository contains the ERP data for self-face, friend's face and other's face perception. Raw Data folder contain the EEG data in Brain Products format. Epoched Data folder contain processed EEG data in EEGLAB format. sLORETA files folder contain data of source mean amplitude within-cluster of significant correlations between ERP and heartbeat perception scores. Also, repository include subject description file with the antropometric and psychometric data.
DOI: 10.17632/9rdfbfctm7.1
title: Data set accompanying the article: Unraveling the Seasonality of UV Exposure in Reef Waters of a Rapidly Warming (Sub-)tropical Sea

description: This data set comprises of the underlying data used in Figures 2 (incident UV), 3 & 6 (Temperature, Chl-a and aCDOM), 4 (Kd), 5 (in situ UV exposure) and 7 (projected temperature and UV-B) of the publication entitled "Unraveling the Seasonality of UV Exposure in Reef Waters of a Rapidly Warming (Sub-)tropical Sea". Keywords: Red Sea, coral reefs, marine optics, ultraviolet radiation (UV), daily UV exposure, downwelling diffuse attenuation coefficient (Kd), chlorophyll-a, CDOM, temperature, seasonality, climate change
DOI: 10.17632/fs3z4kcxn8.1
title: Data for Analysis of Nano-Silica and Xanthan Gum as a High-Temperature Thixotropic Agent for Oil-Well Cement

description: Data for Analysis of Nano-Silica and Xanthan Gum as a High-Temperature Thixotropic Agent for Oil-Well Cement
DOI: 10.5281/zenodo.3673110
title: 2019 Eurobarometer on Food Safety in the EU_Datasets

description: This Special Eurobarometer, commissioned by EFSA, provides insights in terms of: Europeans’ overall interest in food safety, including factors affecting food-related decisions, main information channels on food-related risks, changes in behaviour and views on complexity of communication about food-related risks. Awareness and risk perceptions when it comes to food safety topics, trust in different sources of information and understanding of the EU food safety system The survey was carried out by the Kantar network in the 28 EU Member States between the 9<sup>th</sup> and 26<sup>th</sup> of April 2019. Some 27,655 respondents from different social and demographic groups were interviewed face-to-face at home in their mother tongue. Additional data was collected during November 2019 in the following pre-accession countries: Albania, Montenegro, Serbia, North Macedonia and Turkey. The methodology used is that of the Standard Eurobarometer surveys carried out by the Directorate-General for Communication. It is the same for all countries and territories covered in the survey. The datasets published are distributed as follows: Volume A: Countries Volume AA: Groups of countries Volume B: EU/socio-demographics Volume C: Country/socio-demographics Microdata <em>Disclaimer &gt; In accordance with Regulation (EU) 2018/1725 on the protection of natural persons with regard to the processing of personal data applicable to EFSA, some data elements were excluded from the eb_91.3_EFSA_Microdata file published hereby, in order to prevent that individual respondents may be identifiable. The excluded data elements include occupation and the region of respondent’s residence within the country. </em>
description: EU; XLS; socialscience@efsa.europa.eu
DOI: 10.17632/h5w65yh7t4.2
title: Harris et al. 2020 Supplementary Material

description: Supplementary Materials for Harris et al. (2020): "Stable isotope compositions of herbivore teeth indicate climatic stability leading into the mid-Miocene Climatic Optimum, in Idaho, U.S.A." Supplementary Text + Supplementary Tables S1-S4
DOI: 10.17632/72b47vpgtz.1
title: Quantified processed microarray data for 22 individuals with and without proliferative retinopathy

description: Quality control from RNA extraction was performed using the Agilent bio-analyzer, processed using the Illumina™ TotalPrep™-96 RNA Amplification Kit (ThermoFisher 4393543), hybridized to Illumina HT12v4 microarrays (Catalog number: 4393543), and scanned on an Illumina HiScan scanner [22] [23]. For each of the 22 individuals, three biological replicates were profiled, with each sample being assessed at both standard glucose conditions (11mM of glucose), as well as high glucose conditions (30mM of glucose). Biological replicates were split from the same mother flask; cells were grown in separate flasks and run on different microarray plates on different days. Each biological replicate was generated from a separate frozen aliquot of that cell line. The gene expression data comprised a total of 144 samples from 22 individuals (3 replicates per individual and treatment, except for 3 individuals with 5 replicates). Gene expression was assessed in two conditions, standard glucose and high glucose, and generated from four different groups of gene expression arrays run at a given time that were carefully designed to minimize potential batch effects. BeadChip data were extracted using GenomeStudio (version GSGX 1.9.0) and the raw expression and control probe data from the four different batches were preprocessed using a lumiExpresso function in the lumi R package [8, 9] in three steps: (i) background correction (lumiB function with the bgAdjust method); (ii) variance stabilizing transformation (lumiT function with the log2 option); (iii) normalization (lumiN function with the robust spline normalization (rsn) algorithm that is a mixture of quantile and loess normalization). To remove unexpressed probes, we applied a detection filter to retain probes with strong true signal by applying Illumina BeadArrays detection p-values &lt; 0.01 followed by removing probes that did not have annotated genes, resulting in a total of 15,591 probes.
DOI: 10.17632/cd9yrcgrbd.1
title: Data for: Field scale quantification indicates potential for variability in return flows from flood irrigation in the high altitude western US

description: Associated research in : Gordon, B. L., Paige, G. B., Miller, S. N., Claes, N., & Parsekian, A. D. (2020). Field scale quantification indicates potential for variability in return flows from flood irrigation in the high altitude western US. Agricultural Water Management, 232, 106062. Readme: The included files are: Calculated Flow, Calculated_Losses, Calculated_Return_Flows, ET_Not_Interpolated, Precipitation, and GIS Database. All the data (except GIS) are in tab delimited ASCII files. GIS data are in standard formats, most site specific information including soils, meadow delineation, instrumentation, etc. can be found in the site_information file. Flow data (Calculated_Flow, Calculated_Losses, Calculated_Return_Flows) were obtained using developed rating curves at each site, where each stilling well was instrumented with a pressure transducer (Level TROLL 500 Data Logger, In-Situ, USA) and manual flow measurements consisting of 25+ individual points for each measurement were made using an electromagnetic current meter (MF Pro, OTT Hydromet, USA). ET data include both measurements from a Large Aperture Scintillometer (LAS MKII, Kipp & Zonen, NLD) and from Penman-Monteith Calculations performed on raw meteorological data collected on site. For Penman-Monteith, we include both raw values and values modified using a crop coefficient from Pochop et al. (1992). Precipitation data were collected using a tipping bucket rain gauge (Rain Collector II, Davis Instruments, USA). All data (except the ET data for the scintillometer) are from May 2015 to October 2015; the ET data from the scintillometer are from June 2015 to October 2015. If you have any questions, or would like raw flow data or unprocessed meterological data, please contact me via email at: beatrice.gordon1@gmail.com
DOI: 10.17632/xcs7y2wcph.2
title: Example dataset for SoundTrap array

description: A sample dataset of a 3-element SoundTrap array, as recorded on the bench is available here. This is supplementary research data to accompany the following article: Malinka CE, Atkins J, Johnson MP, Tonnesen PH, Dunn CA, Claridge DE, Aguilar de Soto N, Madsen PT. "An autonomous hydrophone array to study the acoustic ecology of deep-water toothed whales." Deep Sea Research I. https://doi.org/10.​1016/​j.​dsr.​2020.​103233 This data is included to allow for testing of the MATLAB library (github.com/cemalinka/SoundTrapArray) for the time synchronisation of all channels on the SoundTrap array. 1678024710 is the transmitter, and the other two SoundTraps are receivers. Upon using this software and data, taps of both receivers against the transmitter at the end of the ~2.5 h long deployment will be accurately time-aligned in the resulting multi-channel WAV files.
DOI: 10.17632/3228jznyct.1
title: Magnetic Tweezers Data in Brief: A benchmark data set for the mechanical properties of double-stranded DNA and RNA under torsional constraint

description: The data sets are organised in folders corresponding to the respective figures in the paper.
DOI: 10.17632/vn73k5bvmn.1
title: Geochemical data for Late Paleozoic syn-collisional mafic igneous complex from southwestern Tianshan
DOI: 10.17632/xhstnyj5fg.2
title: a Spontaneously Combusting Coal-Mine Waste Heap in Ban Chaung, Dawei District, Myanmar

description: These datasets involve 1) ambient air quality testing, 2) spontaneous combustion fire frequency record, 3) temperature anomalies detected by Landsat, 4) photos of mine waste heap as well as affected environment, 5) estimation of remedial cost, 6) VDO of gas emission from a crack on top of the mine waste heap, and 7) XRD analysis of coal-mine waste
DOI: 10.5258/soton/d1216
title: Data from paper on "In vivo delivery of VEGF RNA and protein to increase osteogenesis and intraosseous angiogenesis"

description: Data from paper on "In vivo delivery of VEGF RNA and protein to increase osteogenesis and intraosseous angiogenesis" in Scientific Reports (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6882814/)
DOI: 10.17632/bb7stxv4p3.1
title: Data for: A Profit-to-Provisioning Approach to Setting the Countercyclical Capital Buffer: The Czech Example

description: The banking prudential indicators time series. The use of the time series is free. However, we kindly ask the user to cite one of the following papers, in which the results were first published: Pfeifer, L., & M. Hodula (2018). A Profit-to-Provisioning Approach to Setting the Countercyclical Capital Buffer: The Czech Example. CNB Working Paper Series No 5/2018. Prague: Czech National Bank. or Pfeifer, L., & M. Hodula (2018). A Profit-to-Provisioning Approach to Setting the Countercyclical Capital Buffer: The Czech Example. ESRB Paper Series No 82/August 2018. Frankfurt am Main: European Systemic Risk Board. Disclaimer: We provide the time series in good faight. The views expressed are those of the authors and do not necessarily reflect the official views of the CNB or ESRB.