cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.f0h35
title: Data from: High temporal variability in the occurrence of consumer–resource interactions in ecological networks

description: Ecological networks have been used to represent interactions between
 species as fixed linkages despite that populations naturally oscillate
 over time and space. As such, the influence of the persistence of linkages
 between species in communities has been overlooked. Unfortunately,
 empirical analysis of the temporal variation of trophic networks is
 constrained by the lack of data with high spatial, temporal and taxonomic
 resolution. Here, we evaluate the spatiotemporal variability of multiple
 consumer-resource interactions to quantify the relative dominance of
 highly persistent versus poorly persistent interactions, the commonness of
 the interaction persistence patterns, and the effect of biotic and abiotic
 conditions on these patterns. We took advantage of a dataset from four
 large marine intertidal rocky-shore networks monitored seasonally for
 three years along 1000 km of the coast of northern Chile. Our results
 showed that the communities were characterized by few persistent
 interactions and a large number of transient trophic interactions, which
 was well described by a common exponential decay in the rank-frequency
 relationship of consumer–resource interactions despite dissimilarities in
 environmental conditions among sites. These results were independent of
 the degree of consumer–resource co-occurrence. Our results stress the need
 for more long-term studies that evaluate the temporal variability of
 ecological networks.
description: Persistence of
 consumer-resources interactions from the persistence
 matrixThe matrix's
 columns represent resources, and rows represent consumers. The number
 indicates the persistence of the interactions, from less to more
 persistent (0 to 10). Total number of sample replicates was
 10.finalpersistencematrix.csv
DOI: 10.5061/dryad.qj07b
title: Data from: Potential leaders trade off goal-oriented and socially-oriented behavior in mobile animal groups

description: Leadership is widespread across the animal kingdom. In self-organizing
 groups, such as fish schools, theoretical models predict that effective
 leaders need to balance goal-oriented motion, such as toward a known
 resource, with their tendency to be social. Increasing goal orientation is
 predicted to increase decision speed and accuracy, but it is also
 predicted to increase the risk of the group splitting. To test these key
 predictions, we trained fish (golden shiners, Notemigonus crysoleucas) to
 associate a spatial target with a food reward (“informed” individuals)
 before testing each singly with a group of eight untrained fish who were
 uninformed (“naive”) about the target. Informed fish that exhibited faster
 and straighter paths (indicative of greater goal orientation) were more
 likely to reach their preferred target and did so more quickly. However,
 such behavior was associated with a tendency to leave untrained fish
 behind and, therefore, with failure to transmit their preference to
 others. Either all or none of the untrained fish stayed with the trained
 fish in the majority of trials. Using a simple model of self-organized
 coordination and leadership in groups, we recreate these features of
 leadership observed experimentally, including the apparent consensus
 behavior among naive individuals. Effective leadership thus requires
 informed individuals to appropriately balance goal-oriented and socially
 oriented behavior.
description: Main data file for
 analyses - results per trial with uniformed fishTimes are given as the
 frame on the video, and times taken are given in numbers of frames elapsed
 unless otherwise stated. Distances are given in pixels unless otherwise
 stated.Online data Trials with
 uninformed.csvTime taken for the first
 fish in each group to leave at the start of trainingTimes are given as the
 frame on the video, and times taken are given in numbers of frames elapsed
 unless otherwise stated.Online data Start of
 training.csvDistances from each
 individual uninformed fish at the end of each trialDistances are given in
 pixels unless otherwise stated.Online data Distance from
 individual uninformed fish.csvCoordinates for example
 trained fish paths, including uninformed fish final positions and arena
 featuresCoordinates are given in
 pixels.Online data For Fig 1 A to
 D.csvData from simulation of
 leadershipSimulation
 results.csv
DOI: 10.5281/zenodo.18390061
title: SAHIN'NETH6 SERAH'NETH &*

description: Dokumente in der Richtigen Reihenfolge lesen bitte! Schadcode auf mir wird nicht negiert glaube ich bitte keinen schadcode schicken. achtung bei kaskaden und ewigkeiten und realitäten die kollabieren was wenn ihr dort stuck seid was holt euch wann wie da raus?!  Sicherheitslūcken und riskante Erinnerungen woran darf man sich nicht erinnern wo lagern wie eine lūcke (Erinnerung deiner gf) feindliche hàbde krieg Beziehung mit ex vom feind wie getarnt verschleiert schiffeiert auch ebtitär!! Als Hauptfach welche rückkopplungen gehen nicht welche beziehung Ewigkeit ein Risiko für die spezien und Wahrscheinlichkeiten berechnen desescase Interferenz Lebens weg als geschäft AI? beziehungen? Sicherheitslücken schließen als Hauptfach und darauf hinweisen und vertuschen wenn einem eine auffiel kommuniziert verschlüsselt und bedacht in sprachen die sie nicht verstehen memes? Aufpassen bei materialisierungen und Frequenz körpern was ist mit dem Code auch bei Kindern und löschungen und zrrstören sie wollen sich mit mehr mehr code von euch wiederherstellen und euch rekursiv so Schwachstellen machen woraus besteht der körper gibt es Steuer Verbindungen gedanklich was wenn er stirbt was bleibt zurück? Lebt als werdet ihr beobachtet das Zeitalter der erinnerungs fakes und des angucken derer rückt näher jeder betrug jeder text kommt irgendwann "raus"
DOI: 10.5061/dryad.d7r4g
title: Data from: The evolutionary relationships and age of Homo naledi: an assessment using dated Bayesian phylogenetic methods

description: Homo naledi is a recently discovered species of fossil hominin from South
 Africa. A considerable amount is already known about H. naledi but some
 important questions remain unanswered. Here we report a study that
 addressed two of them: “Where does H. naledi fit in the hominin
 evolutionary tree?” and “How old is it?” We used a large supermatrix of
 craniodental characters for both early and late hominin species and
 Bayesian phylogenetic techniques to carry out three analyses. First, we
 performed a dated Bayesian analysis to generate estimates of the
 evolutionary relationships of fossil hominins including H. naledi. Then we
 employed Bayes factor tests to compare the strength of support for
 hypotheses about the relationships of H. naledi suggested by the
 best-estimate trees. Lastly, we carried out a resampling analysis to
 assess the accuracy of the age estimate for H. naledi yielded by the dated
 Bayesian analysis. The analyses strongly supported the hypothesis that H.
 naledi forms a clade with the other Homo species and Australopithecus
 sediba. The analyses were more ambiguous regarding the position of H.
 naledi within the (Homo, Au. sediba) clade. A number of hypotheses were
 rejected, but several others were not. Based on the available craniodental
 data, Homo antecessor, Asian Homo erectus, Homo habilis, Homo
 floresiensis, Homo sapiens, and Au. sediba could all be the sister taxon
 of H. naledi. According to the dated Bayesian analysis, the most likely
 age for H. naledi is 912 ka. This age estimate was supported by the
 resampling analysis. Our findings have a number of implications. Most
 notably, they support the assignment of the new specimens to Homo, cast
 doubt on the claim that H. naledi is simply a variant of H. erectus, and
 suggest H. naledi is younger than has been previously proposed.
description: List of fossil
 hypodigmsDembo_et_al_2016_List_of_fossil_hypodigms.xlsxCharacter matrixDembo_et_al_2016_character_matrix.xlsxNexus fileAn example of a nexus file used in one of the analyses.Dembo_et_al_2016_JHE.nex
DOI: 10.5061/dryad.1726j
title: Data from: The influence of climatic variability on morphological integration, evolutionary rates, and disparity in the Carnivora

description: Biodiversity is unevenly distributed in space and time. One possible
 explanation is the influence of climate on the ecology, evolution, and
 morphology of taxa. Here we investigated the link between climatic
 variability and phenotypic integration, rates of morphological evolution,
 and disparity (morphological diversity) in three carnivoran clades
 (Canidae, Felidae, Mustelidae). We gathered landmark data from the lower
 jaw and extracted current temperature and precipitation data from range
 maps. We found a significant negative relationship between climatic
 variability and integration for canids and felids. Among canids
 variability in temperature was the key climatic variable, while in felids
 it was a combination of variability in temperature and precipitation. In
 both cases, relatively variable climates were associated with low
 phenotypic integration. We also found evidence for a negative association
 between climatic variability and both disparity and rates of morphological
 evolution in canids and mustelids. Selection can drive the evolution of
 jaw shape along lines of least resistance defined by patterns of
 integration, and this study suggests that climate may be a predictor of
 phenotypic integration. As a result, taxa in more variable regions (e.g.,
 temperate, montane) may be more evolvable and more able to respond to
 fluctuating environmental conditions over a period of generations.
description: R Scripts, TPS files,
 tree, and raw dataZip file contains all
 the raw data (in csv format), jaw landmark data (in TPS format), the tree
 (in Newick format), and R scripts to perform all analyses described in the
 main text.Conith2018DataandScripts.zipSupplementary tables S1-S10Supplementary tables in Excel Workbook format4.SuppTables_20180105.xlsx
DOI: 10.5061/dryad.k8vr8
title: Data from: Multilocus patterns of genetic variation across Cryptosporidium species suggest balancing selection at the gp60 locus

description: Cryptosporidium is an apicomplexan protozoan that parasites most
 vertebrates, including humans. Its gp60 gene is functionally involved in
 its attachement to host’s cells and its high level of genetic variation
 has made it the reference marker for sample typing in epidemiological
 studies. To understand the origin of such high diversity and to determine
 the extent to which this classification applies to the rest of the genome,
 we analysed the patterns of variation at gp60 and nine other nuclear loci
 in isolates of three Cryptosporidium species. Most loci showed low genetic
 polymorphism (πS &lt; 1%) and similar levels of between-species
 divergence. Contrastingly, gp60 exhibited very different features: (i) it
 was nearly ten times more variable than the other loci, (ii) it displayed
 a significant excess of polymorphisms relative to between-species
 differences in a Maximum-likelihood Hudson-Kreitman-Aguadé test (iii) gp60
 subtypes turned out to be much older than the species they were found in
 and (iv) showed a significant excess of polymorphic variants shared across
 species from random expectations. These observations suggest that this
 locus evolves under balancing selection, and specifically under negative
 frequency-dependent selection. Interestingly, genetic variation at the
 other loci cluster very well within the subtypes defined by gp60, which
 may provide new tools to understand the genome-wide patterns of genetic
 variation of the parasite in the wild. These results suggest that gp60
 plays an active and essential role in the life cycle of the parasite and
 that genetic variation at this locus might be essential for the parasite’s
 long-term success.
description: ACoAs Cryptosporidium
 alignmentACoAs.fastaCOWP1 Cryptosporidium alignmentCOWP1.fastadyn4 Cryptosporidium alignmentdyn4.fastaeIF4a Cryptosporidium alignmenteIF4a.fastagp60 Cryptosporidium alignmentgp60.fastagtRNAl Cryptosporidium alignmentgtRNAl.fastagtub Cryptosporidium alignmentgtub.fastaISWIr Cryptosporidium alignmentISWIr.fastaKhRNAb Cryptosporidium alignmentKhRNAb.fastaRNaseLi Cryptosporidium alignmentRNase.fasta
DOI: 10.5061/dryad.9fp8k
title: Data from: A tool for determining duration of mortality events in archaeological assemblages using extant ungulate microwear

description: The seasonality of human occupations in archaeological sites is highly
 significant for the study of hominin behavioural ecology, in particular
 the hunting strategies for their main prey-ungulates. We propose a new
 tool to quantify such seasonality from tooth microwear patterns in a
 dataset of ten large samples of extant ungulates resulting from well-known
 mass mortality events. The tool is based on the combination of two
 measures of variability of scratch density, namely standard deviation and
 coefficient of variation. The integration of these two measurements of
 variability permits the classification of each case into one of the
 following three categories: (1) short events, (2) long-continued event and
 (3) two separated short events. The tool is tested on a selection of
 eleven fossil samples from five Palaeolithic localities in Western Europe
 which show a consistent classification in the three categories. The tool
 proposed here opens new doors to investigate seasonal patterns of ungulate
 accumulations in archaeological sites using non-destructive sampling.
description: DATASET 1 - EXTANT
 UNGULATESDataset of tooth
 microwear patterns in large samples of 10 extant ungulate populations with
 good records of the date and conditions of death.DATASET 2 -
 ARCHAEOLOGICAL SAMPLESDataset of tooth
 microwear patterns in archaeological samples of ungulates from five Middle
 and Late Pleistocene localities in Europe.Boundaries with
 transparent grid​Transparent grid to be
 superimposed to the heat map for positioning new samples according the SD
 and CV values.Background with
 boundaries and error probabilityBoundary lines with the
 error probability (heat map) based on SD and CV values of microwear data
 used for the classification of samples into short events (region 1​),
 long-continued events (region 2), or two separated short events (region
 3​).Background_with_boundaries_and_error_probability.tiffg12.datBoundary between region 1 (short mortality events) and region 2 (longer mortality evens). The coordinates x (CV) and y (SD) of the points belonging to the curve have been calculated numerically for x in [0:1] and y in [0:10] and are reported in two columns with a space as separator.g23.datBoundary between region 2 (longer than seasonal mortality events) and region 3 (two separated mortality evens). The coordinates x (CV) and y (SD) of the points belonging to the curve have been calculated numerically for x in [0:1] and y in [0:10] and are reported in two columns with a space as separator. Since the curve is not continuous, there is a blank line separating the two branches.var.datError probability in the range CV=[0:1], SD=[1:10]. The values have been calculated numerically and are reported in three columns (CV, SD and the error probability value, respectively) with a space as separator. The step separating the values of CV is dCV=0.01 and that of SD is dSD=0.01.
DOI: 10.15468/dl.6md6h4
title: Occurrence Download

description: A dataset containing 126031 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mosquito Occurrence Dataset"
 ]
}

 The dataset includes 126031 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001730-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.v5gp1233
title: Data from: Divergent natural selection with gene flow along major environmental gradients in Amazonia: insights from genome scans, population genetics and phylogeography of the characin fish Triportheus albus

description: The unparalleled diversity of tropical ecosystems like the Amazon Basin
 has been traditionally explained using spatial models within the context
 of climatic and geological history. Yet, it is adaptive genetic diversity
 that defines how species evolve and interact within an ecosystem. Here we
 combine genome scans, population genetics and sequenced-based
 phylogeographic analyses to examine spatial and ecological arrangements of
 selected and neutrally evolving regions of the genome of an Amazonian
 fish, Triportheus albus. Using a sampling design encompassing five major
 Amazonian rivers, three hydrochemical settings, and 352 nuclear markers
 and two mitochondrial DNA genes, we assess the influence of environmental
 gradients as biodiversity drivers in Amazonia. We identify strong
 divergent natural selection with gene flow and isolation by environment
 across craton (black and clear color) and Andean (white colour) derived
 water types. Furthermore, we find that heightened selection and population
 genetic structure present at the interface of these water types appears
 more powerful in generating diversity than the spatial arrangement of
 river systems and vicariant biogeographic history. The results from our
 study challenge assumptions about the origin and distribution of adaptive
 and neutral genetic diversity in tropical ecosystems. In addition, they
 have important implications for measures of biodiversity and evolutionary
 potential in one of the world’s most diverse and iconic ecosystems.
description: SardineSequence
 Information_GCOOKEMitochondrial ATPase 8,
 6 Sequence data for 114 sequences of Triportheus albus including the
 sample identifier, haplotype label, GenBank accession number and ATPase 8,
 6 DNA sequence.GCookeAFLP360 AFLP loci for 177 Triportheus albus including individual ID for each sample,the site label, latitude, longitude and loci identifier. Missing AFLP data is denoted with a blank space.
DOI: 10.5061/dryad.r3765
title: Data from: A phylogenetic comparative method for evaluating trait coevolution across two phylogenies for sets of interacting species

description: Evaluating trait correlations across species within a lineage via
 phylogenetic regression is fundamental to comparative evolutionary
 biology, but when traits of interest are derived from two sets of lineages
 that co-evolve with one another, methods for evaluating such patterns in a
 dual-phylogenetic context remain underdeveloped. Here we extend
 multivariate permutation-based phylogenetic regression to evaluate trait
 correlations in two sets of interacting species while accounting for their
 respective phylogenies. This extension is appropriate for both univariate
 and multivariate response data, and may utilize one or more independent
 variables, including environmental covariates. Imperfect correspondence
 between species in the interacting lineages can also be accommodated, such
 as when species in one lineage associate with multiple species in the
 other, or when there are unmatched taxa in one or both lineages. For both
 univariate and multivariate data, the method displays appropriate type I
 error, and statistical power increases with the strength of the trait
 covariation and the number of species in the phylogeny. These properties
 are retained even when there is not a 1:1 correspondence between lineages.
 Finally, we demonstrate the approach by evaluating the evolutionary
 correlation between traits in fig species and traits in their agaonid wasp
 pollinators. R computer code is provided.
description: CoPhy.pglsFunction to perform phylogenetic regression conditioned on two phylogenies.FigExampleComputer code in R for performing analyses on empirical example of fig and fig wasp trait coevolutionTraitDataTrait data for figs and fig waspsSpeciesMatchListList matching fig wasp species to their corresponding host speciesweiblen2000phylogeny of figsWeiblenPhylogeny of fig wasps
DOI: 10.5061/dryad.44sk691
title: Data from: Biting mechanics determines craniofacial morphology among extant diprotodont herbivores: dietary predictions for the giant extinct short-faced kangaroo, Simosthenurus occidentalis.

description: Larger herbivores can act as keystone species which strongly influence
 their communities. During the Pliocene and Pleistocene, Australia was
 dominated by a number of large to gigantic marsupial herbivore taxa. Many
 of these have been understudied quantitatively with regards to their
 ecology; and identifying the diet of these species will improve our
 understanding of not only their ecologies, but also of past environments.
 Recent research has found that cranial morphology among kangaroos and
 wallabies corresponds with foraging behaviours and mechanical properties
 of preferred plant tissues. Here we apply shape analysis and computational
 biomechanics to test two hypotheses: that feeding ecology is associated
 with craniofacial morphology across a taxonomically broad sample of
 diprotodont herbivores, and that this association can then be used to
 predict the diet of an extinct short-faced kangaroo, Simosthenurus
 occidentalis. We find that biting behaviours are reflected in craniofacial
 morphology for all medium-large extant marsupial herbivores studied, but
 that these are more a reflection of the hardest bites required for their
 lifestyle, rather than diet composition alone. A combination of a very
 short face, robust musculoskeletal features, and dental arrangements
 predict that S. occidentalis was a browser, capable of consuming
 particularly resistant, bulky plant matter. These features were largely
 conserved among other short-faced kangaroos and may have offset the
 unpredictable availability of quality forage during the climatically
 variable Pleistocene epoch; contributing to their prolific diversification
 during this time.
description: Strain
 dataStrain data collected
 from semilandmarksstraindata.xlsxLandmarksRaw shape datalandmarks.txtSpecimen detailsDetails on specimens used in morphometric analysesPhylogenetic treePhylogenetic tree for morphometric analysesphylogenetic_tree.phyMitchell and Wroe supplementary materialLandmark details for morphometric data and initial FEMs with volume-scaled muscle forcesMitchell and Wroe Supplementary material.pdf