cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13020/d6gp45
title: GlycoVis: Visualizing Glycan Distribution in the Protein N-Glycosylation Pathwayin Mammalian Cells

description: Glycosylation pattern is an important quality attribute of protein therapeutics. It affects protein stability, half-life and even biological functions. The N-glycosylation pathway is a highly branched network. Although only a relative small number of enzymes involved in the pathway, a multitude of glycan intermediates can be produced. In order to study this network, GlycoVis was created to visualize the distribution of glycans and potential reaction paths leading to each glycan in the N-glycosylation network. The program was written in Matlab, interfacing with Graphviz. It incorporates substrate specificity of the enzymes involved in the pathway in a relationship matrix. Given an input of glycan distribution data, the program traces all the potential reaction paths leading to each glycan, and outputs pathway maps with glycans colored in line with their relative abundances.
DOI: 10.13020/95jr-dt88
title: Block-level, non-work accessibility data for planned transitways in the Twin Cities

description: Accessibility to grocery stores, primary healthcare, elementary, middle, and high schools by transit is measured for the Twin Cities. Census block-level minimum travel times to the first, second, third,...,tenth destination are calculated before and after incorporating services changes to the transit network. The transit network baseline includes the Green Line extension and Orange Line. Five planned transitways are evaluated against the baseline including the B Line and local route 21 changes, the D Line and local route 5 changes, the E Line and local route 6 changes, the Gold Line, and the Rush Line. The analysis is completed for four departure windows during the weekday. The report associated with this data aggregates across the Twin Cities metropolitan worker population and disaggregates by worker demographics.
description: The data are organized by scenario then by departure window for a total of 28 scenarios. Each scenario has a Geopackage spatial file which is comprised of result layers for the five destination types studied. Travel times between blocks and X number of destinations are given in seconds. For example, this data answers the question "What is the minimum travel time on transit needed to reach 3 different grocery stores?"
DOI: 10.13020/mwhd-jy06
title:  Understory light environment measured in 2017 and 2018 at Bagley Nature Area in Duluth, MN 

description: These data were collected for a project comparing the leaf phenology, carbon gain, growth, and freezing susceptibility of invasive and native species. Understory light availability was measured above 80 understory wood shrubs using hemispherical photos, lux sensors, and photosynthetically active radiation (PAR) sensors. Light data was used to compare overstory and understory leaf phenology, and to quantify light available for carbon gain in the understory.
DOI: 10.13020/353t-xm19
title:  Scaled Hydrokinetic Turbine Array installed in a laboratory channel and flood-like sediment transport conditions: topography, flow velocity and array model performance

description: The data represent sediment flux, spatio-temporally resolved topographic scans, flow velocity and voltage from the hydrokinetic turbine array experiments presented in the referenced scientific article published on Nature Energy (see reference). Hydrokinetic Energy represents a viable source of renewable energy that harness the kinetic energy of natural currents. Our experiments show that this technology can be deployed efficiently in large sandy rivers (e.g. Mississippi River), without compromising the geomorphic equilibrium of the stream and the structural safety of the turbine foundation, even in the presence of large migrating dunes.
description: Please see Readme files included in every data folder.
DOI: 10.13020/d6rp4n
title: Growth Rates and Variances of Unexploited Wolf Populations in Dynamic Equilibria: Data, R Code, and Supporting Results

description: These files contain data and R code (along with associated output from running the code) supporting all results reported in: Mech, D. and J. Fieberg. 2014. Growth Rates and Variances of Unexploited Wolf Populations in Dynamic Equilibria. Wildlife Society Bulletin. In Mech and Fieberg (2014), we analyzed natural, long-term, wolf-population-density trajectories totaling 130 years of data from three areas: Isle Royale National Park in Lake Superior, Michigan; the east-central Superior National Forest in northeastern Minnesota; and Denali National Park, Alaska. We fit density-independent and Ricker models to each time series, allowing for 3 different assumptions regarding observation error (no error, Poisson or Log-normal observation error). We suggest estimates of the population-dynamic parameters can serve as benchmarks for comparison with those calculated from other wolf populations repopulating other areas.
description: This dataset contains four files. PopulationModels.R is an R script defining functions used to fit density-independent and Ricker population models to associated time series data. With these functions, population measurements can be modeled under three different measurement assumptions: i) measured without error; ii) measured with Poisson error; or iii) measured with log-normal error. MechFieberg.R is a R script that will run all analyses supporting the findings in Mech and Fieberg (2014). MechFieberg.html is a summary of the output expected when running the MechFieberg.R script. Wolfdat.csv is the raw data file containing the wolf home range measurements. The four columns in this data correspond to the year of measurement (YR), and the location of measurement: Denali National Park (Denali), Isle Royale (IsleRoyale), and Superior National Forest (SNF).
DOI: 10.13020/tj2p-2r90
title: Data for "Microfluidic long DNA sample preparation from cells"

description: This is the data for the article published as "Microfluidic long DNA sample preparation from cells" in Lab on a chip. The data includes DNA molecular weight distribution analysis and DNA concentration measurements from fluorometry data.
description: Fig5_Annotate.tif is the tiff file of Fig. 5 that has all the molecules numbered for analysis shown in MWD.csv. MWD.csv has the molecular weight distribution of the 121 DNA molecules in Fig. 5 of the manuscript, that is represented as a histogram in Fig. 6. QubitData.xlsx shows the DNA and protein concentration data of our device samples that is presented in the manuscript. This file was exported from the Qubit Fluorometer 2.0.
DOI: 10.13020/39eg-bg21
title:  MSRC2019: Mass, moisture, nitrogen, and phosphorus in street sweepings collected from five cities in the Twin Cities Metropolitan Area, Minnesota 

description: Quality of many urban water bodies is impaired because of phosphorus (P) loading from stormwater runoff. Trees near impervious surfaces contribute significantly to this P loading. Mounting evidence indicates that street sweeping, by removing nutrient-rich litterfall from streets, can effectively reduce inputs of pollutants to stormwater and reduce maintenance of downstream BMPs. Yet, street sweeping remains an underdeveloped BMP for P source reduction, as currently there is no easily implementable method for crediting sweeping practices that is approved by the Minnesota Pollution Control Agency (MPCA). Thus, water quality credits for street sweeping practices are typically not applied to permit conditions such as Total Maximum Daily Loads (TMDL) Waste Load Allocations in Minnesota. Through a UMN-MPCA-city partnership, we collected data on street sweeping loads including: sweeper volume, wet mass of solids, dry mass of solids, and nitrogen and phosphorus concentrations in sweepings and loads removed by different street sweeper types throughout the snow-free season (spring, summer, fall), across the range of tree canopy covers and species composition typical of Minnesota’s cities. Partner cities included Forest Lake, Minneapolis, Prior Lake, Roseville, and Shoreview.
description: The 'MSRC2019.csv' file contains data on street sweeping routes; canopy cover over routes; sweeping load wet and dry mass; street sweeping total phosphorus, total nitrogen, and total organic carbon concentrations from street sweeping operations in five cities in the Twin Cities Metropolitan Area, Minnesota. The 'MSRC2019_Metadata.csv' file contains Metadata describing variables, units, description of variables, and calculations (if applicable). The 'Readme_MSRC2019_MSRC2019_Metadata.txt' is a readme file with additional information about the study.
DOI: 10.13020/zn1k-5476
title: Diagnostic accuracy of a bovine specific electronic beta-hydroxybutyrate handheld meter in fresh blood and stored serum samples

description: This study aims to evaluate the diagnostic accuracy of the bovine specific beta-hydroxybutyrate (BHB) meter Nova Vet (NVET). We evaluated the accuracy and agreement of the NVET in fresh blood and thawed serum with the reference laboratory assay; and the repeatability, the interference by anticoagulants, and the optimum slope calibration factor. Results from the Precision Xtra (another already validated BHB meter) are also available.
description: ketometers.csv: ID of cattle sampled, BHB concentration measurements using Nova Vet, Precision Xtra, laboratory assay, and Nova Vet in serum at five different slopes.   
     
repeatibility_NVet.csv: BHB concentration measured 20 times in 3 cows with the Nova Vet meter at two different days and using different batches of testing strips.  

repeatibility_PXtra.csv: BHB concentration measured 20 times in 3 cows with the Precision Xtra meter at two different days and using different batches of testing strips.        

interference.nv.csv: BHB concentration measured with Nova Vet meter using tubes containing both anticoagulants LI-HEP and K-EDTA20, and without anticoagulant.

interference.px.csv: BHB concentration measured with Precision Xtra meter using tubes containing both anticoagulants LI-HEP and K-EDTA20, and without anticoagulant.
DOI: 10.13020/z6np-q485
title: Supporting data for "3D Printed Polymer Photodetectors"

description: Extrusion-based 3D printing, an emerging technology, has been previously used in the comprehensive fabrication of light-emitting diodes using various functional inks, without cleanrooms or conventional microfabrication techniques. Here, polymer-based photodetectors exhibiting high performance are fully 3D printed and thoroughly characterized. A semiconducting polymer ink is printed and optimized for the active layer of the photodetector, achieving an external quantum efficiency of 25.3%, which is comparable to that of microfabricated counterparts and yet created solely via a one-pot custom built 3D-printing tool housed under ambient conditions. The devices are integrated into image sensing arrays with high sensitivity and wide field of view, by 3D printing interconnected photodetectors directly on flexible substrates and hemispherical surfaces. This approach is further extended to create integrated multifunctional devices consisting of optically coupled photodetectors and light-emitting diodes, demonstrating for the first time the multifunctional integration of multiple semiconducting device types which are fully 3D printed on a single platform. The 3D-printed optoelectronic devices are made without conventional microfabrication facilities, allowing for flexibility in the design and manufacturing of next-generation wearable and
3D-structured optoelectronics, and validating the potential of 3D printing to achieve high-performance integrated active electronic materials and devices.
description: This data set includes the supporting data for 3D printed polymer photodetectors.
DOI: 10.13020/d6fh5h
title: Poly(isoprenecarboxylates) from Glucose via Anhydromevalonolactone

description: These are raw data files obtained during development of the following manuscript: Ball-Jones, N. R.; Fahnhorst, G. W.; Hoye, T.R. "Poly(isoprenecarboxylates) from Glucose via Anhydromevalonolactone" ACS Macro Lett. 2016, 1128–1131. The abstract of this document is the following, "A short and efficient synthesis of a series of isoprenecarboxylic acid esters and their corresponding polymers is presented. The base-catalyzed eliminative ring opening of anhydromevalonolactone (3) provides isoprenecarboxylic acid (6-H), which was further transformed to the isoprenecarboxylic acid esters. Reversible addition–fragmentation chain-transfer (RAFT) polymerization was used to synthesize high molecular weight (>100 kg mol–1) poly(isoprenecarboxylates) with dispersities (Đ) of ca. 1.5. The glass transition temperatures (Tg) and entanglement molecular weights (Me) of the poly(isoprenecarboxylates) were determined and showed similar trends to the Tg and Me values for analogous poly(acrylate esters). These new glucose-derived materials could provide a sustainable alternative to poly(acrylates).
description: The raw data files are organized within folders by the instrumentation used for characterization or by the chemdraw file. The characterization files are labeled by the number given to each molecule in the main text of the document.
DOI: 10.13020/8sj4-7j70
title: Alteration in spectral quality of natural sunlight by various photoselective gels during summer 2020 in St. Paul MN

description: Data included here show how various color correction, color conversion, or color effect photoselective gels alter the spectral quality of natural sunlight. Data were collected from three brands 1)LEE filters, 2)Rosco Cinegel, 3) Rosco e-color+, and 4) Rosco CalColor and from 45 photoselective gel models. Photoselective gels are primarily used to alter lighting quality for film and stage production, but photoselective gels can also be used to alter the spectral quality of sunlight in order for plant science researchers to simulate the spectral quality underneath foliage. These data will help plant scientists choose photoselective gels to match the spectral quality of shaded areas, and will help improve the research of the impact of shade on plant growth and development.
DOI: 10.13020/d8f8-qh03
title: Data for: Inconsistent sexual signaling degrades optimal mating decisions in animals

description: Data from a series of phonotaxis tests used to investigate the effects of within-individual variation (inconsistency) in male signals and ambient chorus noise on female mating decisions in Cope's gray treefrog. This dataset is among only a few generated to examine the effects of within-individual variation in signal production on animal communication. The data are now being released in support of a publication describing our findings.
description: The single data file contains the entire dataset in "long" format (i.e., there are multiple row entries related to each test subject).
DOI: 10.13020/7vd6-at92
title: A Numerical Model for Alfven Waves in Jupiter's Magnetosphere 

description: The ionospheric Alfvén resonator (IAR) is a structure formed by the rapid decrease in the plasma density above a planetary ionosphere.  This results in a corresponding increase in the Alfvén speed that can provide partial reflection of Alfvén waves.  At Earth, the IAR on auroral field lines is associated with the broadband acceleration of auroral particles, sometimes termed the Alfvenic aurora.  This arises since phase mixing in the IAR reduces the perpendicular wavelength of the Alfvén waves, which enhances the parallel electric field due to electron inertia.  This parallel electric field fluctuates at frequencies of 0.1-20.0 Hz, comparable to the electron transit time through the region, leading to the broadband acceleration.  The prevalence of such broadband acceleration at Jupiter suggests that a similar process can occur in the Jovian IAR.  A numerical model of Alfvén wave propagation in the Jovian IAR has been developed to investigate these interactions.  This model describes the evolution of the electric and magnetic fields in the low-altitude region close to Jupiter that is sampled during Juno’s perijove passes. In particular, the model relates measurement of magnetic fields below the ion cyclotron frequency from the MAG and Waves instruments on Juno and electric fields from Waves to the associated parallel electric fields that can accelerate auroral particles.
description: A numerical code to describe the propagation of Alfven waves in Jupiter's magnetosphere.  This code, written in Fortran, is a finite difference, time-domain code that solves Maxwell's equations in a plasma.
DOI: 10.13020/t9tr-y063
title: Data and R code for analysis of walleye and yellow perch age-0 length in Minnesota's Large Lakes

description: Invasive species represent a threat to aquatic ecosystems globally; however, impacts can be heterogenous across systems. Documented impacts of invasive zebra mussels (Dreissena polymorpha) and spiny water fleas (Bythotrephes cedarstroemi; hereafter Bythotrephes) on native fishes are variable and context dependent across locations and time periods. Here, we use a hierarchical Bayesian analysis of a 35-year dataset on two fish species from 9 lakes to demonstrate that early life growth of ecologically important fishes are influenced by these aquatic invasive species. Walleye (Sander vitreus) grew more slowly throughout their first year of life, and were on average 12 or 14% smaller at the end of their first summer following invasion by Bythotrephes or zebra mussels, respectively. Yellow perch (Perca flavescens) growth was less affected by invasion. Yellow perch on average grew more slowly in their first year of life following invasion by zebra mussels, although this effect was not statistically distinguishable from zero. Early life growth of both walleye and yellow perch was less tightly coupled to degree days in invaded systems, as demonstrated by increased variance surrounding the degree day-length relationship. Smaller first-year size is related to walleye survival and recruitment to later life stages and has important implications for lake food webs and fisheries management. Future research quantifying effects of zebra mussels and Bythotrephes on other population-level processes and across a wider gradient of lake types is needed to understand the mechanisms driving observed changes in walleye growth.
description: Data files contain code for fitting Bayesian Hierarchical model of age-0 walleye and yellow perch growth, which generates output of predicted lengths and parameter estimates for generating figures. Model output is also included as .rds files. Also included is code for predicting age-0 walleye and yellow perch length as a function of zebra mussel and Bythotrephes invasion status across a range of degree day values based on model estimated parameters, which generates figures 3-6 from Hansen et al. manuscript. Length data for both species were collected simultaneously, we have separated walleye and yellow perch data into two files for analysis. Code for model fitting (WalleyeModel.R and PerchModel.R) are identical except for they call and analyze species-specific datasets. Code for generating figures (Predicted_lengths_figures_WAE.R and Predicted_lengths_figures_YEP.R) can call model fitting code (WalleyeModel.R and PerchModel.R) and fit models to generate outputs required for figures or call .rds files to avoid model fitting. These files are identical except for they call and use species-specific datasets and model outputs. Lengths of age-0 walleye and yellow perch collected using beach seines in Minnesota's large lakes. Data were collected by the Minnesota Department of Natural Resources as part of the Large Lakes Sampling program.
DOI: 10.13020/ch4p-mc89
title: Supporting data for "3D Printed Functional and Biological Materials on Moving Freeform Surfaces"

description: The data set includes the experimental data supporting the results reported in Zhu, Zhijie, Shuang‐Zhuang Guo, Tessa Hirdler, Cindy Eide, Xiaoxiao Fan, Jakub Tolar, and Michael C. McAlpine. "3D printed functional and biological materials on moving freeform surfaces." Advanced Materials, 30(23), 1707495.
Conventional 3D printing technologies typically rely on open‐loop, calibrate‐then‐print operation procedures. An alternative approach is adaptive 3D printing, which is a closed‐loop method that combines real‐time feedback control and direct ink writing of functional materials in order to fabricate devices on moving freeform surfaces. Here, it is demonstrated that the changes of states in the 3D printing workspace in terms of the geometries and motions of target surfaces can be perceived by an integrated robotic system aided by computer vision. A hybrid fabrication procedure combining 3D printing of electrical connects with automatic pick‐and‐placing of surface‐mounted electronic components yields functional electronic devices on a free‐moving human hand. Using this same approach, cell‐laden hydrogels are also printed on live mice, creating a model for future studies of wound‐healing diseases. This adaptive 3D printing method may lead to new forms of smart manufacturing technologies for directly printed wearable devices on the body and for advanced medical treatments.
description: Full description in the file "ZhuReadme.txt".
DOI: 10.13020/v5p7-mz54
title:  Sample delivery trip data of an extended range electric vehicle 

description: The repository is used to provide some sample data for the paper "A Physics Model-Guided Online Bayesian Framework for Energy Management of Extended Range Electric Delivery Vehicles". It contains 8 delivery trip data. In each delivery trip data, there are 7 columns. The physical meaning and units are indicated in the first row and documented in the readme file.
description: The data contained in the repository is the raw data with noise and low resolution. Also, there are missing values. To do simulation discussed in the paper, preprocessing should be performed according to section V of the paper.
DOI: 10.13020/mc6r-kv62
title: Data for the manuscript: The effect of spatial and temporal variability in plant functional traits on ecohydrological processes in a desert shrubland: a model-data fusion approach.

description: The data contains the meteorological observation (including radiation, rainfall, specific humidity, wind speed, air pressure) at Kelmet and Globe site in Kelso Valley, CA from 2005 to 2010 as well as the reconstructed climate forcing from 1961 to 2005. The meteorological data were used to drive the model CLM 4.5. In addition, the MODIS leaf area index observation and in-site soil moisture at the two sites are included here, which were used for model-data fusion to constrain CLM model related vegetation trait parameters. The data also contains the downscaled climate model dataset (MACAv2-METDATA) at the two sites for the RCP 8.5 scenario simulation.
DOI: 10.6084/m9.figshare.3761562.v2151
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.13020/x705-4w32
title: Data and R Code to Support: Owl Occupancy in Three of El Salvador's Protected Areas from 2003 through 2013

description: Complete data and R code to reproduce the results presented in the manuscript entitled "Owl Occupancy in Three of El Salvador's Protected Areas from 2003 through 2013." This manuscript, by Jane Noll West and Althea A. Archer is currently in review with the Journal of Raptor Research. This study was the first long-term survey of owl occupancy in El Salvador and presents novel results on the occupancy patterns of three owls and the species richness of each protected area by year. These data and code files can be used to reproduce the findings, and include additional metadata that could support further analysis by future researchers.