cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5sv39/4
title: Supplementary file 4-SRSF1 translational consensus motif positions

description: Bed file containing positions and sequences of the SRSF1 consensus motif in hg18 assembly of human genome. Data are supplied as a tab-delimited text file.
DOI: 10.5061/dryad.69329/1
title: Centipeda_continuous_diffusion_analysis_file

description: Analysis file for BEAST - place in directly and make sure the polygon files and species tree file are referenced correctly
DOI: 10.5061/dryad.69329/2
title: Centipeda_pruned_species_trees

description: Empirical distribution of time calibrated species trees, with pruned outgroup. Place in same directory as xml and polygon files.
DOI: 10.5061/dryad.6mh29/4
title: Cognettia COI consensus tree file from MrBayes analysis
DOI: 10.5061/dryad.6mh29/5
title: Cognettia 16S consensus tree file from MrBayes analysis
DOI: 10.5061/dryad.6mh29/6
title: Cognettia H3 consensus tree file from MrBayes analysis
DOI: 10.5061/dryad.6mh29/7
title: Cognettia ITS consensus tree file from MrBayes analysis
DOI: 10.5061/dryad.6mh29/8
title: Cognettia 16S MCMC file from MrBayes analysis
DOI: 10.5061/dryad.6mh29/9
title: Cognettia COI MCMC file from MrBayes analysis
DOI: 10.5061/dryad.b245q/1
title: Alignment of public sequences for the COI gene for the Pentatomidae

description: Alignment of public sequences available on the Barcode of Life Datasystems (BOLD) for the DNA barcoding region of the COI gene for the Pentatomidae. Alignment was performed in MegAlign (DNASTAR Lasergene) using ClustalW. BOLD Sequence ID number and Genus name provided for each specimen.
DOI: 10.5061/dryad.b245q/2
title: Alignment of public sequences for the COI gene for the Scelionidae

description: Alignment of public sequences available on the Barcode of Life Datasystems (BOLD) for the DNA barcoding region of the COI gene for the Scelionidae. Alignment was performed in MegAlign (DNASTAR Lasergene) using ClustalW. BOLD Sequence ID number and Genus name provided for each specimen.
DOI: 10.5061/dryad.b245q/3
title: Alignment of COI barcode sequences for Telenomus spp. (Hymenoptera: Scelionidae)

description: Alignment of sequences for the DNA barcoding region of the COI gene for species of Telenomus collected in the field in Canada, Switzerland, and China. Alignment was performed in MegAlign (DNASTAR Lasergene) using ClustalW. BOLD Sequence ID number and Genus name provided for each specimen.
DOI: 10.5061/dryad.b245q/4
title: Alignment of COI barcode sequences for Trissolcus spp. (Hymenoptera: Scelionidae)

description: Alignment of sequences for the DNA barcoding region of the COI gene for species of Trissolcus collected in the field in Canada, Switzerland, and China. Alignment was performed in MegAlign (DNASTAR Lasergene) using ClustalW. BOLD Sequence ID number and Genus name provided for each specimen.
DOI: 10.5061/dryad.b245q/5
title: in silico testing of primers for Scelionidae and Pentatomidae

description: Output for in silico testing of Scel_F1, PENT_F2, HCO-2198 onScelionidae, Telenomus, Trissolcus, and Pentatomidae consensus sequences. Results generated using FastPCR v6.4 (Kalendar et al. 2011; http://primerdigital.com/fastpcr.html) to screen target sequences to determine primer location, orientation, efficiency of binding, and complementarity.
DOI: 10.5061/dryad.b245q/6
title: Primer Picking Results for Pentatomidae

description: Location, direction, suitability, and amplification parameters for primers designed to amplify Pentatomidae. Results generated using Primer3 v0.4.0 (Untergrasser et al. 2012; http://bioinfo.ut.ee/primer3-0.4.0/).
DOI: 10.5061/dryad.f0b50/1
title: Supplementary Material S1

description: Supplementary Figures S1
DOI: 10.5061/dryad.f0b50/2
title: Supplementary Material S2

description: Supplementary Material S2. Tutorial to compute multiple imputations and R functions to compute averaged imputation and 95% confidence ellipses in ordinated principal axes
DOI: 10.5061/dryad.ff852/1
title: 2CL8 phased nexus file

description: Anonymous nuclear locus collected for L. zonata.
DOI: 10.5061/dryad.ff852/2
title: CL4 phased nexus file

description: Phased nexus file for anonymous locus CL4, Lampropeltis zonata
DOI: 10.5061/dryad.ff852/3
title: ND4 nexus file

description: Aligned ND4 locus originally from Rodríguez-Robles JA, DeNardo DF, Staub RE (1999) Phylogeography of the California mountain kingsnake, Lampropeltis zonata (Colubridae). Molecular Ecology 8, 1923-1934.
DOI: 10.5061/dryad.g4052/1
title: exp. 1 excl. fem. data of col. f
DOI: 10.5061/dryad.g4052/2
title: exp. 1 excl. fem. data of col. f

description: see read me file
DOI: 10.5061/dryad.g4052/3
title: exp. 1 incl. fem. data of col. f

description: see read me file
DOI: 10.5061/dryad.g4052/4
title: exp. 1 incl. fem. data of col. f

description: see read me file
DOI: 10.5061/dryad.kf490/5
title: Lagisz_gene_orders_coded_MGR

description: Protein-coding gene orders of 47 Nematoda species and 2 outgroup species coded for analyses with MGR software.Codes: 1 = ATP6, 2 = COX1, 3 = COX2, 4 = COX3, 5 = CYTB, 6 = ND1, 7 = ND2, 8 = ND3, 9 = ND4, 10 = ND4L, 11 = ND5, 12 = ND6
DOI: 10.5061/dryad.kf490/6
title: Lagisz_aa_alignment_BLOCKS

description: Amino acid sequence alignment of the protein-coding genes from mitogenomes of 47 Nematoda species and 2 outgroup species.The sequences were aligned individually for each gena and de-gapped using BLOCKS program and then concatenated into a single alignment for analyses.
DOI: 10.5061/dryad.m75g2/1
title: Data from Lincoln estimates of mallard abundance in North America

description: Microsoft Excel *.xlsx file
DOI: 10.5061/dryad.m9m4f/1
title: Data for two spring wheat varieties in a de Wit series of competition

description: Pot experiment conducted in the Botanical Garden of Beijing Normal University.
DOI: 10.5061/dryad.mh77c/1
title: 942

description: After quanlity control, this experimental population consists of 942 young Simmental bulls born between 2008 and 2011, which are originated from Ulgai, Xilingol league, Inner Mongolia of China. After weaning, the cattle were moved to Beijing Jinweifuren cattle farm and were fattened under the same feeding and management environment. Each individual was timely observed for growth and development traits until slaughtered from 16 to 18 months old. During the period of slaughter, carcass traits and meat quality traits were measured according to Institutional Meat Purchase Specifications for fresh beef guidelines.
DOI: 10.5061/dryad.ns135/6
title: Mormyridae mt-genomes alignment.

description: Alignment of the reconstructed C. compressirostris mt-genome against other mormyrids mt-genomes available from Genbank.
DOI: 10.5061/dryad.ns135/7
title: Fisher Exact Test

description: R script used to perform the Fisher's Exact Test with FDR p-value correction.
DOI: 10.5061/dryad.pq93h/1
title: entropy.tar

description: This compressed directory contains the source code (C++), example files, and a README file for the admixture proportion and admixture class models described in the publication. Compile the pogram and type the program name for a list of command line options. Source code for a second program (estpost_h5_entropy.c) is incluced to summarize the MCMC output from the analysis.
DOI: 10.5061/dryad.pq93h/2
title: isolationByDistanceAndTaxon

description: R code to test for isolation by distance and isolation by taxon. This is a Bayesian implementation of the mixed model described by Clarke et al. 2002 to model the lack of independence among pair-wise distances. This code requires JAGS and rjags.
DOI: 10.5061/dryad.pq93h/3
title: maf_0.05_0.5_lycaeides_gbs_admix_d80

description: Variant call format (VCF) file for the full set of common variants identified in Lycaeides. Rare and low-frequency VCF files are too large to include on Dryad, but are available from the authors upon request.
DOI: 10.5061/dryad.pq93h/4
title: lycaeides_gbscontigs_reference

description: Lycaeides reference sequence set generated from the GBS data. This was used for the reference based alignments with bwa.
DOI: 10.5061/dryad.q1r19/1
title: Data (Kikuchi Yoshitomo)

description: Fitness parameters of symbiont infected (Bu+) and uninfected (Bu-) insects. Sheets: survival rate, male's fitness parameters, female's fitness parameters, time to reproduction, egg numbers, and symbiont titer.
DOI: 10.5061/dryad.rq412/6
title: Cytb alignment by group (sets)

description: Nexus file of 762 samples of DNA sequence data for the cytochrome b gene across jumping mice including N. insignis (5 subspecies), Z. hudsonius (12 subspecies), Z. princeps (10 subspecies), and Z. trinotatus (4 subspecies). Also includes a taxon set conforming to the 21 jumping mice lineages and 4 species.
DOI: 10.5061/dryad.s04v1/1
title: AFLP profiles

description: AFLP profiles for 60 plants of Helleborus foetidus from three locations in the Sierra de Cazorla, southeastern Spain, used in the study.
DOI: 10.5061/dryad.ss427/1
title: Alignment of all phased ITS2 individuals

description: Sample names are in the following format: indentifier_species_(collection site). The letters a and b suffixed to the identifier denote the alleles for the same individual. Homozygotes are entered twice. Individuals were phased using a combination of the program PHASE 2.1 as implemented in DNASP v5 and Indelligent v1.2 (available from: imperialis.inhs.illinois.edu/dmitriev/indel.asp‎).
DOI: 10.5061/dryad.ss427/2
title: Genbank accession numbers

description: A table of genbank accession numbers for all specimens collected during this study. Additional columns are included indicating the species and sampling site for each specimen.
DOI: 10.5061/dryad.ss427/3
title: Plant trnL references and beetle derived variants

description: A fasta file of plant sequences amplified for this paper. Sequences are not aligned globally but beetle variants are aligned to each plant reference. The description section of each fasta sequence explains whether a beetle derived sequence was identified by comparison to a reference sequence or using SAP.
DOI: 10.5061/dryad.t53k5/1
title: Genotypes  Proq

description: Microsatellite alleles for Penicillium roqueforti strains
DOI: 10.5061/dryad.tm1k0/6
title: OTU_matrix_99_similarity

description: A presence absence matrix for each OTU and specimen using 99% similarity to assign OTUs. See read me file in 'OTU_matrix_97_similarity.tab'
DOI: 10.5061/dryad.tm1k0/7
title: Taxonomy_WORMS

description: The basis for the annotation of all OTUs in the study. Must be used together with the OTU matrixes to be able to get any geographical data from it.
DOI: 10.5061/dryad.tm1k0/8
title: all_sequences_tab_delimited

description: All sequences used in this study
DOI: 10.5061/dryad.1h18h/1
title: Data for Dryad
DOI: 10.5061/dryad.1p70j/1
title: Mate availability and mating decisions in the field and lab

description: In this excel file you will find four tabs summarizing 1) field data on the threespine stickleback OSR in Paxton Lake early, mid, and late in the breeding season (2007), 2) lab generated data on the sexual signals of male sticklebacks housed under male-biased or female-biased conditions throughout a breeding season, 3) lab generated data on the male competition behaviors observed in male-biased and female-biased treatment tanks throughout a breeding season, and 4) lab generated female preference and responsiveness data for sticklebacks housed under male-biased or female-biased conditions throughout a breeding season.
DOI: 10.5061/dryad.266h9/7
title: rawvar_rmdup.ind7

description: Raw SNP data from Index 7 for Ishikawaella U.S. 2011 from Illumina HiSeq generated using GATK.
DOI: 10.5061/dryad.266h9/8
title: rawvar_rmdup.ind8

description: Raw SNP data from Index 8 for Ishikawaella U.S. 2011 from Illumina HiSeq generated using GATK.
DOI: 10.5061/dryad.266h9/9
title: rawvar_rmdup.ind9

description: Raw SNP data from Index 9 for Ishikawaella U.S. 2011 from Illumina HiSeq generated using GATK.
DOI: 10.5061/dryad.298b1/1
title: Reflectance spectra from Glossy Starlings

description: A compressed file including raw spectral files (Avantes .ttt files) of reflectance measurements from three species of African Glossy Starlings (Lamprotornis acuticaudus, L. chloropterus and L. elisabeth). Three replicate measurements from 11 plumage patches were taken from four museum specimens from each species.
DOI: 10.5061/dryad.298qm/14
title: Sequence files

description: Consensus sequences in FASTA format for all exons captured, generated with the following quality filters: base and mapping qualities of at least 20 and a minimum depth of coverage of 10. Sequence positions that did not meet all of these criteria are coded as N. Only sequences with a minimum of 50 bases are included. Each file is named with the ENSEMBL exon ID for Oreochromis niloticus and the genus name of the taxon.
DOI: 10.5061/dryad.2d7j0/1
title: Egg rate data

description: This file contains the egg rate data for virgin and mated females.
DOI: 10.5061/dryad.2r6m4/1
title: PFU_Ulaevis_Dryad_data
DOI: 10.5061/dryad.3v7k3/1
title: Amounts of dye donated and received by artificial flowers
DOI: 10.5061/dryad.53vs3/8
title: Table S7

description: Table S7 in MS Excel format
DOI: 10.5061/dryad.55d46/1
title: High resolution Fig. 2

description: High resolution Fig. 2
DOI: 10.5061/dryad.55d46/2
title: High resolution Fig. 3

description: High resolution Fig. 3
DOI: 10.5061/dryad.55d46/3
title: High resolution Fig. 4

description: High resolution Fig. 4
DOI: 10.5061/dryad.55d46/4
title: High resolution Fig. 5

description: High resolution Fig. 5
DOI: 10.5061/dryad.69329/10
title: C_minima_ssp_minima_polygon_file

description: Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
DOI: 10.5061/dryad.69329/3
title: C_aotearoana_polygon_file

description: Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
DOI: 10.5061/dryad.69329/4
title: C_borealis_polygon_file

description: Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
DOI: 10.5061/dryad.69329/5
title: C_crateriformis_ssp_compacta_polygon_file

description: Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
DOI: 10.5061/dryad.69329/6
title: C_crateriformis_ssp_crateriformis_polygon_file

description: Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
DOI: 10.5061/dryad.69329/7
title: C_cunninghamii_polygon_file

description: Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
DOI: 10.5061/dryad.69329/8
title: C_elatinoides_polygon_file

description: Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
DOI: 10.5061/dryad.69329/9
title: C_minima_ssp_macrocephala_polygon_file

description: Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
DOI: 10.5061/dryad.6kn93/1
title: Greenish warbler sequences and SNPs mapped on zebra finch genome

description: Greenish warbler sequences mapped on zebra finch genome assembly (pink annotations). The physical location of SNP markers is also indicated. Grey annotations refer to the set of 81,034 SNPs with data in at least 80% of individuals (N=95 birds). Yellow annotations refer to the subset of 2,334 SNPs with no missing data and minimum coverage  = 3 reads. Blue annotations refer to the 1,827 SNP markers used during the chromosome-by-chromosome introgression analysis. These assemblies can be inspected in the free version of the Geneious genomic workbench, which can be downloaded from http://www.geneious.com/download.
DOI: 10.5061/dryad.6kn93/2
title: Greenish Warbler De Novo Assembly Draft

description: De Novo Assembly of a whole-genome sequencing library from one Phylloscopus trochiloides viridanus bird (SRA accession number: SRX473141). De Novo Assembly was carried out in the CLC genomic workbench and following the default parameters set by the developer.
DOI: 10.5061/dryad.6mh29/10
title: Cognettia H3 MCMC file from MrBayes analysis
DOI: 10.5061/dryad.6mh29/11
title: Cognettia ITS MCMC file from MrBayes analysis
DOI: 10.5061/dryad.6mh29/12
title: Cognettia 16S nexus file for MrBayes analysis
DOI: 10.5061/dryad.6mh29/13
title: Cognettia COI nexus file for MrBayes analysis
DOI: 10.5061/dryad.6mh29/14
title: Cognettia H3 nexus file for MrBayes analysis
DOI: 10.5061/dryad.6mh29/15
title: Cognettia ITS nexus file for MrBayes analysis
DOI: 10.5061/dryad.6mh29/16
title: Cognettia 16S run1 p file from MrBayes analysis
DOI: 10.5061/dryad.6mh29/17
title: Cognettia 16S run2 p file from MrBayes analysis
DOI: 10.5061/dryad.6mh29/18
title: Cognettia COI run1 p file from MrBayes analysis
DOI: 10.5061/dryad.6n94m/1
title: BiteForceMdasMdau

description: txt-file with bite force data collected in the field. abbreviations: FA=forearm length; Species: 1= male; 2= femal; Sex: f = female; m= male; mean bite force = mean; maximal bite force= max; upper toothrow length= CM³.
DOI: 10.5061/dryad.6n94m/2
title: Morphology data Mdas Mdau

description: txt file containing morphological data on wings of Mdasycneme and Mdaubentonii collected in the field. Species: 1= Myotis dasycneme, 2= Myotis daubentonii. Sex: 1= male, 2= female. Status: 1= juvenile, 2= subadult, 3= adult. FA= forearm length. Lhw= length hand wing.	Law= length arm wing. 	S= wing area. Tl= tip length ratio,	Ts= tip area ratio,	 I= wing tip shape index.
DOI: 10.5061/dryad.6n94m/3
title: weight lifting performance

description: excel file with weight lifting performance data collected from bats in the lab. FA= forearm length.
DOI: 10.5061/dryad.6n94m/4
title: Myotis_Molecular Diet Data_Clipped

description: Fasta file containing sequences from ion torrent sequencing faecal samples of Myotis dasycneme and Myotis daubentonii.
DOI: 10.5061/dryad.6n94m/5
title: morphological diet data

description: excel file containing the presence absence data of prey from faecal samples of Myotis dasycneme and Myotis daubentonii.
DOI: 10.5061/dryad.85066/1
title: Kamler_Suppl-1

description: Supplemental Material. This file contains the genetic and geographic data used for analysis in the paper.
DOI: 10.5061/dryad.8c1p8/1
title: decaydata

description: Time series experiment with different predator species fed with the squash bug, Anasa tristis. Further description of column contents is included in readme file.
DOI: 10.5061/dryad.8c1p8/2
title: pcrpredation_squashbug

description: Molecular gut content analysis data of predators collected from experimental butternut squash fields.
DOI: 10.5061/dryad.8c1p8/3
title: squashbugabundance

description: Row cover experiment with butternut squash. File includes treatments, dates and abundance of arthropod groups within these groupings.
DOI: 10.5061/dryad.b245q/7
title: Primer Picking Results for Scelionidae

description: Location, direction, suitability, and amplification parameters for primers designed to amplify Scelionidae. Primer stats generated using Primer3 v0.4.0 (Untergrasser et al. 2012; http://bioinfo.ut.ee/primer3-0.4.0/).
DOI: 10.5061/dryad.fq127/1
title: Dryad_Frass_qPCR

description: This file contains the raw and processed qPCR reads from the frass experiments
DOI: 10.5061/dryad.fq127/2
title: Dryad_Beetle_qPCR

description: This file contains the qPCR raw and processed data from the whole beetle experiments
DOI: 10.5061/dryad.fq127/3
title: Dryad_Transmission_and_Fitness

description: Data from the pathogen transmission and fitness experiments are contained in this file
DOI: 10.5061/dryad.g4052/5
title: exp. 2 for analysis

description: see read me file
DOI: 10.5061/dryad.g4052/6
title: exp. 2 for analysis

description: see read me file
DOI: 10.5061/dryad.g4052/7
title: exp. 2 for graph

description: see read me file
DOI: 10.5061/dryad.g4052/8
title: exp. 3

description: see read me file
DOI: 10.5061/dryad.g4052/9
title: exp. 3

description: see read me file
DOI: 10.5061/dryad.g9735/1
title: Individual-level wild-caught fish morphometric data

description: Morphometric data for the wild-caught fish MANCOVA.
DOI: 10.5061/dryad.hf49c/1
title: original  data
DOI: 10.5061/dryad.jq878/1
title: Apparent emigration logistic GLMM data

description: Data in Excel spreadsheet format for GLMM analysis of emigration patterns of male agile antechinus. Dispersal patterns were identified from the natal and post-dispersal locations of captured individuals, based on genotype matching of adults and young, genetic parentage analysis or assignment tests. Where necessary, column headers are explained in comments boxes.
DOI: 10.5061/dryad.jq878/2
title: Settlement choices_mlogit_input_file

description: Data in spreadsheet format for multinomial modelling of settlement choices by male agile antechinus. Dispersal events were identified by comparing the locations of animals captured at the juvenile and adult stages, and identified by genotype matching (parentage analysis and assignment tests were used for some individuals). Column headers are explained with comments boxes. Data are formatted for the mlogit R package ('long' format).
DOI: 10.5061/dryad.jq878/3
title: Genotypes of agile antechinus at Tumut, NSW, Australia

description: Multilocus microsatellite genotypes of agile antechinus sampled in fragmented habitat at Tumut, NSW, Australia. Data are in GenAlEx format.
DOI: 10.5061/dryad.js47k/1
title: Amphibian abundance and occupancy data

description: These data are the abundance and occupancy patterns for amphibian species on the ES George Reserve (Michigan, USA) over multiple years
DOI: 10.5061/dryad.js47k/2
title: Amphibian phylogeny

description: This is the amphibian phylogeny used in the independent contrasts analysis.
DOI: 10.5061/dryad.k0v17/1
title: D mel CHC B matrix data

description: Data used in analyses as described in the manuscript. Fitness data and CHC phenotype data used in selection analyses, and CHC phenotype and line data used to determine full G matrix (with B) and calculate genetic constraints. Notes within file describe the data in detail.
DOI: 10.5061/dryad.pj02h/1
title: BJLS-3121_R1 Dryad

description: CSV file with raw data
DOI: 10.5061/dryad.qp544/1
title: Infection

description: This file describe the results of infection prevalence per treatment combination. 1. Temperature: COLD (14ºC) and WARM (22ºC). 2. Species: LF (Northern leopard frog), WF (wood frog). 3. Genotypes: we used two clutches of wood frog and one clutch of leopard frog representing 3 genotypes. 4.Strains: we used three ranavirus strain azaC, SsMeV and the wild type wt-FV3, see ur description in the main text. 5. Infection has been assessed by two PCR using published ranavirus MCP primers. The number of infected individual per treatment combination is given. 6. Non-infected: number of non-infected individuals per treatment combination.