cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.dk1j0/12
title: pedigree_HDI_1990_2015

description: This is the source data for Human Development Index (HDI), published as an indication of accuracy and precision. Reports the scale (national, sub-national) and type (reported, interpolated, extrapolated) of each year of data. Detail description is given in a linked article and metadata is provided as an attribute in the NetCDF file itself. Detail description is given in a linked article and metadata is provided as an attribute in the NetCDF file itself.
DOI: 10.5061/dryad.dk1j0/13
title: GDP_PPP_30arcsec

description: The GDP (PPP) data represents average gross domestic production of each grid cell. GDP is given in 2011 international US dollars. The data is derived from GDP per capita (PPP), which is multiplied by gridded population data from Global Human Settlement (GHS). Dataset has a global extent at 30 arc-second resolution for three time steps: 1990, 2000, and 2015. Detail description is given in a linked article and metadata is provided as an attribute in the NetCDF file itself.
DOI: 10.5061/dryad.dk1j0/14
title: kummu_etal_scidata_code

description: This file contains the scripts for data handling and production
DOI: 10.5061/dryad.gj706/1
title: Open loop - Light off

description: Flight experiments with open loop period (light off), prior to closed-loop flight. (Fig. 7)
DOI: 10.5061/dryad.gj706/2
title: Open Loop - Light On

description: Flight experiments with open loop period (light on) prior to closed-loop flight. (Fig. 7)
DOI: 10.5061/dryad.pr78v/1
title: Roswag_etal_sequences

description: The file contains sequences from feces of M. bechsteinii, M. nattereri and P. auritus. The study was conducted in a deciduous forest in Central Germany (Hesse) where all three species coexist on a small spatial scale.
DOI: 10.5061/dryad.q9080/1
title: ICP 3D Volume

description: These data are LA-ICP IMS data from a mouse kidney infected with S. aureus. Each section of the mouse is numbered and data within each folder correspond to each section.
DOI: 10.5061/dryad.q9080/2
title: ICP Iron Reporter

description: These data are LA-ICP IMS data corresponding to mouse kidneys infected with S.aureus. These mice were infected with a, iron-reporter. Mice were analyzed at three time points post infection: 4, 7, and 10 days
DOI: 10.5061/dryad.q9080/3
title: ICP Mn Reporter

description: These are LA-ICP IMS data from the kidney of mice infected with S. aureus. This stain of S. aureus is responsive to manganese. Mice were analyzed at 4, 7, and 10 days post infection.
DOI: 10.5061/dryad.q9080/6
title: FTICR

description: MALDI FTICR IMS of a mouse section containing an infectious foci. The FTICR was used to obtain accurate mass measurements from the MALDI IMS data in order to have confidence in protein identifications.
DOI: 10.5061/dryad.rh0v0g2/1
title: all studies
DOI: 10.5061/dryad.rr7v5/1
title: pheno_geno_data
DOI: 10.5061/dryad.s6fd5c6/1
title: Milideo Paleobiology  data FINAL

description: Supplemental Table 1. Sites: List of site names (suffixes reflect locations: SD = South Dakota; ND = North Dakota; IASW=southwestern Iowa; ILNE=northeastern Illinois, etc.) and abbreviations, site type (A = archaeological, P = Paleontological) and recovery method (WS = Fine-/Water-Screen, CS = Coarse-Screen, NS – No Screening). All data (faunal composition, MNI, cultural affiliation, site references) are in the Neotoma Paleoecology Database (http://www.neotomadb.org/) and FAUNMAP Database.
Supplemental Table 2. Taxa: List of species names and abbreviations and body size class. Size class 1 contains mammals of small size (&lt; 2 Kg), size category 2 (2-10 Kg), and size category 3 (&gt; 10 Kg).
Supplemental Table 3. Dakotas_all: Sites and MNI (minimum numbers of individuals) for all species.
Supplemental Table 4. Iowa_all: Sites and MNI (minimum numbers of individuals) for all species.
Supplemental Table 5. Illinois_all: Sites and MNI (minimum numbers of individuals) for all species.
Supplemental Table 6. Dakotas_small: Sites and MNI (minimum numbers of individuals) for all species within size category 1 (&lt; 2 kg) only.
Supplemental Table 7. Iowa_small: Sites and MNI (minimum numbers of individuals) for all species within size category 1 (&lt; 2 kg)  only.
Supplemental Table 8. All_sites: All sites and MNI (minimum number of individuals) for all species in all sites.
DOI: 10.5061/dryad.s6fd5c6/2
title: MilideoetalSupplementalFigure1_2col (2)

description: Supplemental Figure 1. NMDS biplot of North and South Dakota (A). Iowa (B), and Illinois (C) sites by body size categories.
DOI: 10.5061/dryad.s6fd5c6/3
title: MilideoetalSupplementalFigure2_2colcorrected

description: Supplemental Figure 2. NMDS biplot of North and South Dakota (A), Iowa (B), and Illinois (C) sites by recovery method.
DOI: 10.5061/dryad.s6fd5c6/4
title: MilideoetalSupplementalFigure3_2col

description: Supplemental Figure 3. NMDS biplot of North and South Dakota sites and Iowa sites (east & west) by geographic location.
DOI: 10.5061/dryad.v5374/20
title: NG-6445_ED6110902_lib23176_1587_5

description: Sequence corresponding to 6D315
DOI: 10.5061/dryad.v5374/21
title: NG-6445_ED6300502_lib23168_1587_7

description: Sequence corresponding to 6D211
DOI: 10.5061/dryad.v5374/22
title: NG-6445_ED7110902_lib23177_1587_5

description: Sequence corresponding to 7D315
DOI: 10.5061/dryad.v5374/23
title: NG-6445_ED7300502_lib23169_1587_5

description: Sequence corresponding to 7D211
DOI: 10.5061/dryad.v5374/24
title: NG-6445_ED8110902_lib23178_1587_5

description: Sequence corresponding to 8D315
DOI: 10.5061/dryad.v5374/25
title: NG-6445_ED8300502_lib23170_1587_5

description: Sequence corresponding to 8D211
DOI: 10.5061/dryad.478kp63/4
title: Grey squirrel detection histories and covariates for use in occupancy analysis using UNMARKED R package

description: Same as red squirrel detection history file except species = grey squirrel
DOI: 10.5061/dryad.4g048/14
title: C10 Unmapped Reads
DOI: 10.5061/dryad.4g048/15
title: C11 Unmapped Reads
DOI: 10.5061/dryad.4g048/16
title: C12 Unmapped Reads
DOI: 10.5061/dryad.4g048/17
title: P5 Unmapped Reads
DOI: 10.5061/dryad.4g048/18
title: P6 Unmapped Reads
DOI: 10.5061/dryad.4g048/19
title: P7 Unmapped Reads
DOI: 10.5061/dryad.4g048/20
title: P8 Unmapped Reads
DOI: 10.5061/dryad.4g048/21
title: P13 Unmapped Reads
DOI: 10.5061/dryad.72262/4
title: Appendix_S06a_2018-01-08

description: Input data and analysis scripts for part of Appendix S6
DOI: 10.5061/dryad.72262/5
title: Appendix_S07_2018-01-08

description: Input data and analysis scripts for Appendix S7
DOI: 10.5061/dryad.72262/6
title: Appendix_S08_2018-01-08

description: Input data and analysis scripts for Appendix S8
DOI: 10.5061/dryad.72262/7
title: Appendix_S09_2018-01-08

description: Input data and analysis scripts for Appendix S9
DOI: 10.5061/dryad.72262/8
title: Genotypes_as_used_2018-01-08

description: MHC genotypes of fish in this experiment (P-generation, F1 and F2)
DOI: 10.5061/dryad.72262/9
title: MHC_genotyping

description: Raw MHC sequencing data (IonTorrent PGM) and genotyping (AmpliSAS) of guppies that feature in this experiment (P-generation, F1, and F2)
DOI: 10.5061/dryad.845n3f6/1
title: Jeffers et al Plant controls on LQ eco structure and function Model Data 27Nov17

description: Pollen, Sporormiella and charcoal influx, bulk sediment stable nitrogen isotopes and reconstructed mean July air temperature data presented in Fig. 2, Fig. 3 and Supplementary Fig. 8.
DOI: 10.5061/dryad.8hv88m0/1
title: S1

description: Supplementary data file 1: OTU by sample table matrix. Each sample represents an individual root tip. Negative controls are included.
DOI: 10.5061/dryad.8hv88m0/2
title: S2

description: Supplementary data file S2: Taxonomic information of each fungal OTU assigned by FUNGuild.
DOI: 10.5061/dryad.8hv88m0/3
title: S3

description: Supplementary data file S3: Sample metadata
DOI: 10.5061/dryad.928c32c/1
title: Damage data for 5 sympatric lepidopteran defoliators in Hungary

description: Data analysed reported here consists of annual records of area defoliated by fives species feeding on broadleaf trees in Hungary. The time series in the data file are comprised of annual values of total damage across Hungary of forest areas (in hectares) with defoliation exceeding 20% reduction of all foliage. The species that are recorded are lymantria dispar, euproctis chrysorrhoea, tortrix viridana, thaumetopoea processionea, malacosoma neustria.
DOI: 10.5061/dryad.bb384/1
title: Counts per survey plot

description: Contains number of crickets of each cricket type counted in individual survey plots during an initial survey period, and then subsequent to a 20-minute song playback period.
DOI: 10.5061/dryad.bb384/2
title: Distances from speaker

description: Contains the distance of each individual cricket observed at the end of a 20-minute playback period to a speaker located in the center of the survey plot.
DOI: 10.5061/dryad.fj852/1
title: Petrie Science 2018 Fig 1B and S1

description: Data collected for results shown in figure 1B and S1, see notes within the file and the manuscript for further guidance
DOI: 10.5061/dryad.fj852/2
title: Petrie Science 2018 Fig 1C and S2

description: Data collected for results shown in figures 1C and S2, see notes within the file and the manuscript for further guidance.
DOI: 10.5061/dryad.fj852/3
title: Petrie Science 2018 sequence of 3-mut replicate 1

description: Sequence of engineered 3-mut J gene replicate 1 (see table S1 for additional guidance).
DOI: 10.5061/dryad.fj852/4
title: Petrie 2018 Science sequence of 3-mut replicate 2.

description: Sequence of engineered 3-mut J gene replicate 2 (see table S1 for additional guidance).
DOI: 10.5061/dryad.fj852/5
title: Petrie Science 2018 sequence of 4-mut  replicate 1

description: Sequence of engineered 4-mut J gene replicate 1 (see table S1 for additional guidance).
DOI: 10.5061/dryad.fj852/6
title: Petrie Science 2018 sequence of 4-mut replicate 2

description: Sequence of engineered 4-mut J gene replicate 2 (see table S1 for additional guidance).
DOI: 10.5061/dryad.gg0nk/1
title: PLos One
DOI: 10.5061/dryad.gj706/10
title: Linear Polarizer, 470nm (1/3)

description: First of 3 files with flight data with linear polarizer, 470 nm wavelength light source (blue light).
DOI: 10.5061/dryad.gj706/11
title: Linear polarizer (470nm) 2/3

description: Second of 3 files with flight data with linear polarizer, 470 nm wavelength light source (blue light).
DOI: 10.5061/dryad.gj706/3
title: Perturbed Paired (1/2)

description: First of 2 data files with data from perturbed, paired flight experiments. (Fig. 3)
DOI: 10.5061/dryad.gj706/4
title: Perturbed Paired (2/2)

description: Second of 2 data files with perturbed, paired flight experiments. (Fig. 3)
DOI: 10.5061/dryad.gj706/5
title: Unperturbed, paired (1/3)

description: First of 3 data files from unperturbed, paired experiments. (Fig. 3)
DOI: 10.5061/dryad.gj706/6
title: Unperturbed, paired (2/3)

description: Second of 3 data files from unperturbed, paired flight experiments. (Fig. 3)
DOI: 10.5061/dryad.gj706/7
title: Unperturbed, paired (3/3)

description: Third of 3 data files with unperturbed, paired flight experiments. (Fig. 3)
DOI: 10.5061/dryad.gj706/8
title: Circular Polarizer

description: Flight data with circular polarizer, control stimulus.
DOI: 10.5061/dryad.gj706/9
title: Linear Polarizer, 365 nm

description: Flight data from experiments with linear polarizer, 365 nm ) wavelength (UV) light source.
DOI: 10.5061/dryad.n8h25/1
title: Models_code_alignments
DOI: 10.5061/dryad.q9080/10
title: MALDI Iron 7 Day

description: These data represent MALDI IMS data of biological replicates of mice infected with S. aureus 7 days post infection. This particular strain of S. aureus has been modified with a fluorescent reporter sensitive to iron deplete conditions. Three biological replicates are tested here.
DOI: 10.5061/dryad.q9080/11
title: MALDI Iron 10 Day

description: These data represent MALDI IMS data of biological replicates of mice infected with S. aureus 10 days post infection. This particular strain of S. aureus has been modified with a fluorescent reporter sensitive to iron deplete conditions. Three biological replicates are tested here.
DOI: 10.5061/dryad.q9080/12
title: MALDI manganese 4 Day

description: These data represent MALDI IMS data of biological replicates of mice infected with S. aureus 4 days post infection. This particular strain of S. aureus has been modified with a fluorescent reporter sensitive to manganese deplete conditions. Three biological replicates are tested here.
DOI: 10.5061/dryad.q9080/13
title: MALDI manganese 7 Day

description: These data represent MALDI IMS data of biological replicates of mice infected with S. aureus 7 days post infection. This particular strain of S. aureus has been modified with a fluorescent reporter sensitive to manganese deplete conditions. Three biological replicates are tested here.
DOI: 10.5061/dryad.q9080/14
title: MALDI manganese 10 Day

description: These data represent MALDI IMS data of biological replicates of mice infected with S. aureus 4 days post infection. This particular strain of S. aureus has been modified with a fluorescent reporter sensitive to manganese deplete conditions. Three biological replicates are tested here.
DOI: 10.5061/dryad.q9080/5
title: bottom up

description: This file represents LC-MS/MS targeted analysis of a peptide detected in MALDI IMS data, delta hemolysin. The sample is a fraction purified from mouse kidney infected with S. aureus. The samples was tryptically digested prior to analysis with LC-MS/MS
DOI: 10.5061/dryad.q9080/7
title: MALDI 3D Volume

description: These data are MALDI IMS data from a 3D mouse kidney infected with S. aureus. These were collected using a SimulTOF mass spectrometer.
DOI: 10.5061/dryad.q9080/8
title: Top Down

description: These data represent LC-MS/MS analysis of intact proteins directly extracted from infectious foci of mouse kidneys infected with S. aureus. Proteins were fragmented using ETD, and ions matching ions detected in MALDI IMS data were manually sequenced.
DOI: 10.5061/dryad.q9080/9
title: MALDI Iron 4 Day

description: These data represent MALDI IMS data of biological replicates of mice infected with S. aureus 4 days post infection. This particular strain of S. aureus has been modified with a fluorescent reporter sensitive to iron deplete conditions. Three biological replicates are tested here.
DOI: 10.5061/dryad.qp0t3/1
title: Supplementary file 2: The annotated cell-gene matrix for the single-cell mRNA sequencing of influenza virus infected cells.

description: This is the matrix generated in ./results/cellgenecounts/ by running the CellRanger analysis in align_and_annotate.ipynb in Supplementary file 1 of the paper.
DOI: 10.5061/dryad.v1h63/1
title: Espeland_et_al_AHE_Illumina_DATA

description: Espeland et al. Illumina anchored hybrid enrichment data in fastq format for each taxa inside a compressed (tar.gz) directory.
DOI: 10.5061/dryad.v1h63/2
title: Espeland_et_al_Butterfly_tribe_reads_only

description: Microsoft Excel worksheet listing the Filename, sample, # trimmed paired reads, #RAW reads, sample code, and	Repository.
DOI: 10.5061/dryad.v1h63/3
title: Espeland_et_al_data_alignments

description: Compressed (tar.gz) directory including 13 relaxed phylip format alignments and partition files used in analysis in Espeland et al. [13L, AA, Full_dataset, GC1, GC2, GC3, GCLE1, LE1, LE2, LE3, LE4M, PI1, PI2]
DOI: 10.5061/dryad.4g048/22
title: P14 Unmapped Reads
DOI: 10.5061/dryad.4g048/23
title: P15 Unmapped Reads
DOI: 10.5061/dryad.4g048/24
title: P16 Unmapped Reads
DOI: 10.5061/dryad.4g048/8
title: README file

description: This file contains a complete description of all files in this data archive, including md5 tags, file formats and all code used to generate the data in this study.
DOI: 10.5061/dryad.6d57c/2
title: Jactel-Forest-Diversity-Productivity-Climate-meta-analysis-data

description: Summary of data included in the meta-analyses
DOI: 10.5061/dryad.7h76t8b/1
title: Table S1.Wader Data

description: Raw data 1987-2015
DOI: 10.5061/dryad.7h76t8b/2
title: Table S2.Tempotral trends

description: Temporal trends in variables
DOI: 10.5061/dryad.7h76t8b/3
title: Table S3.GLS results

description: GLS results
DOI: 10.5061/dryad.7hf2j/10
title: Reference of species
DOI: 10.5061/dryad.7hf2j/6
title: Trammel net sampling_Plant I
DOI: 10.5061/dryad.7hf2j/7
title: Trammel net sampling_Plant II
DOI: 10.5061/dryad.7hf2j/8
title: Underwater visual census_Plant I
DOI: 10.5061/dryad.7hf2j/9
title: Underwater visual census_Plant II
DOI: 10.5061/dryad.8bm78/1
title: parameters_with_phenotype_mort

description: This file combines the trait data and phenotype level mortality. The vector of traits in columns 1 to 32 in each of the 33,000 rows can be thought of as a phenotype. The last two columns (PAR and m.thetap) represent the light level used when fitting the ACGCA model to FIA data in previous work and m.thetap is the phenotype level mortality (m theta p).
DOI: 10.5061/dryad.8bm78/2
title: stand_mort

description: This file contains the simulation or stand level mortality. It also has the average light level for each of the 62 gap simulations in this study (PARavg).
DOI: 10.5061/dryad.8bm78/3
title: tree_mort

description: This file contains tree level mortality (mgp). This file can be used to calculate the mortality data in the other two files.
DOI: 10.5061/dryad.96190/1
title: Genetic, geographic and resistance distance matrix of Saltcedar (Tamarix L.)
DOI: 10.5061/dryad.9642b/1
title: Pipit dataset .bed files

description: .bed and associated .bim and .fam files for each pipit dataset.
DOI: 10.5061/dryad.9642b/2
title: Pipit sample information

description: Phenotypic and population information for each sample
DOI: 10.5061/dryad.9642b/3
title: Chromosome codes

description: Chromosome name and associated numeric code used in .bim files
DOI: 10.5061/dryad.b354f/1
title: Supplementary Tables

description: Set of data tables of specimen numbers and measurements.  Table S1. Complete list of Nsungwe Formation ampullariid specimens. Table S2. Descriptive data for Nsungwe Formation ampullariids. Table S3. Descriptive data for comparative ampullariids. Table S4. Morphometric data for Nsungwe Formation ampullariids included in PCA analysis. Table S5. Morphometric data for comparative specimens included in PCA analysis.
DOI: 10.5061/dryad.cp3f820/1
title: Costa Rica and Ecuador Predation Data

description: Predation data for Adelpha iphiclus, Adelpha serpa, Junonia evarete, and Adelpha leucopthalma during experiments in Costa Rica (March-April 2016) and Ecuador (January-February 2017). Data represent attacks by avian predators across four days in select forest sites.
DOI: 10.5061/dryad.d88d8/1
title: dryad_genotypes

description: This file contains the microsatellite genotypes for adult Dark-eyed Juncos captured along the elevation gradient.
DOI: 10.5061/dryad.d88d8/2
title: dryad_individual_measurements

description: This file contains the field measurements made of Dark-eyed Juncos.
DOI: 10.5061/dryad.d88d8/3
title: dryad_nest_survival

description: This file contains data on monitored Dark-eyed Junco nests, from which survival probabilities were calculated.
DOI: 10.5061/dryad.fj852/10
title: Petrie Science 2018 Fig 2A

description: Data collected for results shown in figure 2A, see notes within the file and the manuscript for further guidance.
DOI: 10.5061/dryad.fj852/11
title: Petrie Science 2018 Fig 2B

description: Data collected for results shown in figure 2B, see notes within the file and the manuscript for further guidance.
DOI: 10.5061/dryad.fj852/13
title: Petrie Science 2018 Fig 3A and 3B

description: Data collected for results shown in figures 3A and 3B, see notes within the file and the manuscript for further guidance.
DOI: 10.5061/dryad.fj852/14
title: Petrie Science 2018 Fig 3C

description: Data collected for results shown in figure 3C, see notes within the file and the manuscript for further guidance.
DOI: 10.5061/dryad.fj852/15
title: Petrie Science Fig 3D

description: Data collected for results shown in figure 3C, see notes within the file and the manuscript for further guidance.
DOI: 10.5061/dryad.fj852/16
title: Petrie Science 2018 Fig S4A and S4B

description: Data collected for results shown in figure S4A and S4B, see notes within the file and the manuscript for further guidance.
DOI: 10.5061/dryad.fj852/7
title: Petrie Science 2018 sequence of 5-mut replicate 1

description: Sequence of engineered 5-mut J gene replicate 1 (see table S1 for additional guidance).
DOI: 10.5061/dryad.fj852/8
title: Petrie Science 2018 sequence of 5-mut replicate 2

description: Sequence of engineered 5-mut J gene replicate 2 (see table S1 for additional guidance).
DOI: 10.5061/dryad.fj852/9
title: Petrie Science 2018 Sequence of engineered 7-mut lyso.

description: Sequence of engineered 7-mut lyso J gene (see table S1 for additional guidance)
DOI: 10.5061/dryad.fn664f0/1
title: README
DOI: 10.5061/dryad.fn664f0/2
title: s01
DOI: 10.5061/dryad.fn664f0/3
title: s02
DOI: 10.5061/dryad.fn664f0/4
title: s03
DOI: 10.5061/dryad.fn664f0/5
title: s04
DOI: 10.5061/dryad.fn664f0/6
title: s05
DOI: 10.5061/dryad.fn664f0/7
title: s06
DOI: 10.5061/dryad.fn664f0/8
title: s07
DOI: 10.5061/dryad.gj706/12
title: Linear Polarizer, 470 nm (3/3)

description: Third of 3 files with flight data with linear polarizer, 470 nm wavelength light source (blue light).
DOI: 10.5061/dryad.gj706/13
title: Intensity and Linear Polarizer

description: Data from experiments with combined intensity gradient and linear polarizer.
DOI: 10.5061/dryad.gj706/14
title: Intensity and Circular Polarizer

description: Data from experiments with combined intensity gradient and circular polarizer.
DOI: 10.5061/dryad.gj706/15
title: Data Description (README)

description: Description of contents and formatting of data files
DOI: 10.5061/dryad.h5c80/2
title: All features with mixed windows

description: The folder contains feature characteristics used for the classification of walking, standing and lying in sheep. The different files contain either collar or ear data. The first column at the files indicates if the window was mixed(1) or non-mixed. The column "Fs" represents the frequency. The column with header  "ws" represents the window size. The column with header "WSL" represents the ground truth with walking (1), standing(2) and lying(3).
DOI: 10.5061/dryad.v1h63/10
title: Espeland_et_al_BUTTERFLY1.0_ProbeKit

description: BUTTERFLY1.0 probe kit
DOI: 10.5061/dryad.v1h63/11
title: readme
DOI: 10.5061/dryad.v1h63/4
title: Espeland_et_al_Dated_tree_Bell_2010_root_calibration

description: Tree file in Newick format
DOI: 10.5061/dryad.v1h63/5
title: Espeland_et_al_Dated_tree_Magallon_2015_root_calibration

description: Tree file in Newick format.
DOI: 10.5061/dryad.v1h63/6
title: Espeland_et_al_Figure_credibility_intervals

description: PDF file of the time calibrated tree with credibility intervals from Espeland et al.
DOI: 10.5061/dryad.v1h63/7
title: Espeland_et_al_NEWICK_trees

description: Compressed (tar.gz) directory including 39 phylogenetic trees estimated for Espeland et al. in newick tree format.[13L_astral.tre, 13L_astrid.tre, 13L_ML_BS.tre, AA_astral.tre, AA_astrid.tre, AA_ML_BS.tre, ALL_astral.tre, ALL_astrid.tre, ALL_ML_BS.tre, GC1_astral.tre, GC1_astrid.tre, GC1_ML_BS.tre, GC2_astral.tre, GC2_astrid.tre, GC2_ML_BS.tre, GC3_astral.tre, GC3_astrid.tre, GC3_ML_BS.tre, GCLE1_astral.tre, GCLE1_astrid.tre, GCLE1_ML_BS.tre, LE1_astral.tre, LE1_astrid.tre, LE1_ML_BS.tre, LE2_astral.tre, LE2_astrid.tre, LE2_ML_BS.tre, LE3_astral.tre, LE3_astrid.tre, LE3_ML_BS.tre, LE4M_astral.tre, LE4M_astrid.tre, LE4M_ML_BS.tre, PI1_astral.tre, PI1_astrid.tre, PI1_ML_BS.tre, PI2_astral.tre, PI2_astrid.tre, PI2_ML_BS.tre]
DOI: 10.5061/dryad.v1h63/8
title: Espeland_et_al_BUTTERFLY1.0_ref

description: Compressed (tar.gz) directory of the alignments in fasta format used as the reference in IBA.py (Breinholt et al 2017) for assembly of Illumina data.
DOI: 10.5061/dryad.v1h63/9
title: genome_getprobe_BLAST

description: Python script used to pull possible hits to probe loci from transcriptomes and genomes.