cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15482/usda.adc/27095383
title: Data from: A global assembly of landrace oat (<i>Avena sativa</i> L.) accessions is a discovery resource for adaptive variation, association mapping, and trait deployment

description: Oat Landrace Diversity (OLD) Panel phenotypes, genotypes, and metadata from: Rahman et al. (2024) "A global assembly of landrace oat (<em>Avena sativa</em> L.) accessions is a discovery resource for adaptive variation, association mapping, and trait deployment".
<strong>"File S1"</strong> and <strong>"File S2"</strong> include population metadata and phenotypic (environmental) data used in association mapping, of which mapping results are listed in <strong>"File S3"</strong>.
<strong>"Rahman_et_al_2024_Metadata.geojson"</strong> is geographical information of OLD Panel accessions surveyed in this study.
<strong>"SBATCH_RUN_nsgc_deepvariant_glsnexus.sh"</strong> and <strong>"RUN_nsgc_deepvariant_glsnexus.sh"</strong> are scripts for variant calling and filtering in SciNet clusters from GBS alignments. IMPORTANT: Do not pull containers in $HOME directory - put them in the main path (for use in SciNet clusters). Google DeepVariant - generates "deepvariant_1.6.0.sif" (RUN: singularity pull docker://google/deepvariant:1.6.0); GLNexus - generates "glnexus_v1.4.1.sif" (RUN: singularity pull docker://google/glnexus:1.4.1). <strong>"DeepVariantWGS.yml"</strong> is the config file for running GLNexus.
<strong>"nsgc.gdv.gln.cohort.clean.maf01maxmiss75diploid.beagle_sorted_filt.gt.vcf"</strong> is the final genotype file described in the study.
DOI: 10.15482/usda.adc/27095383.v1
title: Data from: A global assembly of landrace oat (<i>Avena sativa</i> L.) accessions is a discovery resource for adaptive variation, association mapping, and trait deployment

description: Oat Landrace Diversity (OLD) Panel phenotypes, genotypes, and metadata from: Rahman et al. (2024) "A global assembly of landrace oat (<em>Avena sativa</em> L.) accessions is a discovery resource for adaptive variation, association mapping, and trait deployment".
<strong>"File S1"</strong> and <strong>"File S2"</strong> include population metadata and phenotypic (environmental) data used in association mapping, of which mapping results are listed in <strong>"File S3"</strong>.
<strong>"Rahman_et_al_2024_Metadata.geojson"</strong> is geographical information of OLD Panel accessions surveyed in this study.
<strong>"SBATCH_RUN_nsgc_deepvariant_glsnexus.sh"</strong> and <strong>"RUN_nsgc_deepvariant_glsnexus.sh"</strong> are scripts for variant calling and filtering in SciNet clusters from GBS alignments. IMPORTANT: Do not pull containers in $HOME directory - put them in the main path (for use in SciNet clusters). Google DeepVariant - generates "deepvariant_1.6.0.sif" (RUN: singularity pull docker://google/deepvariant:1.6.0); GLNexus - generates "glnexus_v1.4.1.sif" (RUN: singularity pull docker://google/glnexus:1.4.1). <strong>"DeepVariantWGS.yml"</strong> is the config file for running GLNexus.
<strong>"nsgc.gdv.gln.cohort.clean.maf01maxmiss75diploid.beagle_sorted_filt.gt.vcf"</strong> is the final genotype file described in the study.
DOI: 10.15468/dl.3kvteg
title: Occurrence Download

description: A dataset containing 17558 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Charadrius melodus",
 "Year is 2018"
 ]
}

 The dataset includes 17558 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002997-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5wqjce
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agriogomphus sylvicola",
 "DecimalLongitude is not null",
 "DecimalLatitude is not null"
 ]
}

 The dataset includes 15 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002999-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddcb82
title: Occurrence Download

description: A dataset containing 461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gomortega keule",
 "Country is Chile",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 461 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003000-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.69ypyg
title: Occurrence Download

description: A dataset containing 41500 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Haematopus palliatus",
 "Year is 2018"
 ]
}

 The dataset includes 41500 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002998-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dvd6gh
title: Occurrence Download

description: A dataset containing 89076 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Colibri delphinae",
 "HasCoordinate is true"
 ]
}

 The dataset includes 89076 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002959-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q5ccjt
title: Occurrence Download

description: A dataset containing 18315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Saucerottia cyanifrons",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18315 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003001-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15482/usda.adc/24851604
title: Data from: Density-mediated emissions by Rhyzopertha dominica (Coleoptera: Bostrichidae) and Tribolium castaneum (Coleoptera: Tenebrionidae) modulates foraging by conspecifics

description: Our goal was to manipulate and observe the density-mediated effects of crowding on the behavioral response of both species to common food-based and pheromonal stimuli, and how the volatile emission patterns from grain differed under increasing densities. To accomplish this, the density of colonies for both species was altered (10–500 adults) on a fixed quantity of food (10 g of flour or whole wheat), then the behavioral response to common food and pheromonal cues was evaluated in a wind tunnel and release-recapture experiment, and the volatiles from the colonies were examined through gas chromatography coupled with mass spectrometry (GC-MS). Importantly, our results suggest that, at least for T. castaneum, crowded conditions attenuates attraction to food-based stimuli, but not pheromonal stimuli. Crowding seemed to have no effect on R. dominica response to food stimuli at the densities tested. The relative composition and abundance of headspace volatiles emitted varied significantly with different densities of beetles and was also species-specific. Overall, our results have implications for behaviorally-based management tactics that may be able to improve the sustainability of post-harvest agriculture.
DOI: 10.15482/usda.adc/24851604.v1
title: Data from: Density-mediated emissions by Rhyzopertha dominica (Coleoptera: Bostrichidae) and Tribolium castaneum (Coleoptera: Tenebrionidae) modulates foraging by conspecifics

description: Our goal was to manipulate and observe the density-mediated effects of crowding on the behavioral response of both species to common food-based and pheromonal stimuli, and how the volatile emission patterns from grain differed under increasing densities. To accomplish this, the density of colonies for both species was altered (10–500 adults) on a fixed quantity of food (10 g of flour or whole wheat), then the behavioral response to common food and pheromonal cues was evaluated in a wind tunnel and release-recapture experiment, and the volatiles from the colonies were examined through gas chromatography coupled with mass spectrometry (GC-MS). Importantly, our results suggest that, at least for T. castaneum, crowded conditions attenuates attraction to food-based stimuli, but not pheromonal stimuli. Crowding seemed to have no effect on R. dominica response to food stimuli at the densities tested. The relative composition and abundance of headspace volatiles emitted varied significantly with different densities of beetles and was also species-specific. Overall, our results have implications for behaviorally-based management tactics that may be able to improve the sustainability of post-harvest agriculture.
DOI: 10.15468/dl.kyb8d4
title: Occurrence Download

description: A dataset containing 3121040 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Cyanocitta cristata",
 "Year 2024-2024"
 ]
}

 The dataset includes 3121040 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002985-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13822377
title: Berita UNDIP
DOI: 10.15468/dl.8xfpdv
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-85.21918 41.51543,-57.78082 41.51543,-57.78082 52.48457,-85.21918 52.48457,-85.21918 41.51543))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gentianopsis virgata victorinii"
 ]
}

 The dataset includes 84 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003002-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15482/usda.adc/26015632
title: Data from: Crop- and weather-dependent yield and wind erosion benefits from a conservation practices system

description: This dataset records several responses in a large-scale field south of Mandan, ND to two agricultural management systems, aspirational (ASP; cover crops, and retained wheat straw) and business-as-usual (BAU; no cover crops, wheat straw harvested). Measurements were collected over one full cropping sequence corn-soybean-spring wheat from 2020-2022. Measurements included sediment mass flux, grain yield, grain crop aboveground biomass, grain crop harvest index, and cover crop biomass.
Full details about the data files including variable definitions are provided in the Read Me file.
DOI: 10.15482/usda.adc/26015632.v1
title: Data from: Crop- and weather-dependent yield and wind erosion benefits from a conservation practices system

description: This dataset records several responses in a large-scale field south of Mandan, ND to two agricultural management systems, aspirational (ASP; cover crops, and retained wheat straw) and business-as-usual (BAU; no cover crops, wheat straw harvested). Measurements were collected over one full cropping sequence corn-soybean-spring wheat from 2020-2022. Measurements included sediment mass flux, grain yield, grain crop aboveground biomass, grain crop harvest index, and cover crop biomass.
Full details about the data files including variable definitions are provided in the Read Me file.
DOI: 10.15468/dl.z3x6c8
title: Occurrence Download

description: A dataset containing 354963 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Aponogeton distachyos, Arthurdendyus triangulatus, Cabomba caroliniana, Callosciurus finlaysonii, Cherax destructor, Corvus splendens, Crassula helmsii, Elodea densa, Eriocheir sinensis, Erythranthe guttata, Faxonius immunis, Faxonius juvenilis, Faxonius rusticus, Faxonius virilis, Gambusia affinis, Heracleum mantegazzianum, Heracleum persicum, Heracleum pubescens, Houttuynia cordata, , Impatiens glandulifera, Koenigia polystachya, Lagarosiphon major, Lepomis gibbosus, Limnoperna fortunei, Ludwigia grandiflora, Ludwigia peploides, Lysichiton americanus, Morone americana, Muntiacus reevesi, Myriophyllum aquaticum, Myriophyllum heterophyllum, Pacifastacus leniusculus, Petasites japonicus, Pontederia cordata, Procambarus acutus, Procambarus clarkii, Procambarus virginalis, Pseudorasbora parva, Pycnonotus cafer, Saururus cernuus, Sciurus carolinensis, Sciurus niger, Solenopsis invicta, Solenopsis richteri, Threskiornis aethiopicus, Vespa velutina, Zizania latifolia)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 354963 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002975-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tmzatc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aphylla barbata",
 "DecimalLongitude is not null",
 "DecimalLatitude is not null"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003003-251120083545085/datasets/export for details.
DOI: 10.15482/usda.adc/26820697
title: Data from: "Understanding the effects of grazing and prescribed fire on hydrology of Kentucky bluegrass–dominated rangelands in the northern Great Plains”

description: Rainfall simulation experiments and hydrophobicity measurements with water drop infiltration time and molarity of ethanol droplet tests were conducted at three locations all within the same ecological site in the northern Great Plains. Rainfall simulation experiments were performed on 24 large plots (6 × 2 m) at 63.5 mm h–1 and 127 mm h–1 intensities and on 16 small plots (0.7 × 0.7 m) at 63.5 mm h–1 and 103 mm h–1. Rainfall was maintained on the large plots until 10 minutes of steady-state runoff was measured or for a maximum of 30 minutes in the absence of runoff, while on the small plots, rainfall duration was set at 25 minutes. The soil layer was divided into four strata (litter, thatch, root mat, and mineral soil), which were physically separated for their hydrophobic behavior in laboratory and field water drop penetration tests and molarity analyses.
DOI: 10.15482/usda.adc/26820697.v1
title: Data from: "Understanding the effects of grazing and prescribed fire on hydrology of Kentucky bluegrass–dominated rangelands in the northern Great Plains”

description: Rainfall simulation experiments and hydrophobicity measurements with water drop infiltration time and molarity of ethanol droplet tests were conducted at three locations all within the same ecological site in the northern Great Plains. Rainfall simulation experiments were performed on 24 large plots (6 × 2 m) at 63.5 mm h–1 and 127 mm h–1 intensities and on 16 small plots (0.7 × 0.7 m) at 63.5 mm h–1 and 103 mm h–1. Rainfall was maintained on the large plots until 10 minutes of steady-state runoff was measured or for a maximum of 30 minutes in the absence of runoff, while on the small plots, rainfall duration was set at 25 minutes. The soil layer was divided into four strata (litter, thatch, root mat, and mineral soil), which were physically separated for their hydrophobic behavior in laboratory and field water drop penetration tests and molarity analyses.
DOI: 10.15482/usda.adc/26347789
title: Data from: The effect of a bimodal gravel size distribution on clean-out depth of sand

description: This dataset includes the data in the figures for the article entitled "The effect of a bimodal gravel size distribution on clean-out depth of sand", which is to be published in the Journal of Hydraulic Engineering. The authors are: Kuhnle, R. A., Smith, J. E., Wren, D. G., and Langendoen, E. L.The clogging of the gravel surface layer in gravel-bedded channels with finer sediment (&lt; 2 mm) is a common problem that negatively impacts stream bed habitat quality. Most existing measurements of surface layer sediment clean-out depth are from experiments with narrow gravel size distributions; therefore, a new set of experiments was conducted to explore the effect of widely distributed bimodal gravel fractions on the clean-out depth of interstitial sand. Experiments were used to measure the terminal clean-out depth of 0.136 mm sand from bed material substrates composed of unimodal median diameter gravel of 7.16 mm and bimodal bed material with modes of 7.31 and 34.66 mm and a median diameter of 33.46 mm. It was found that the clean-out depth of sand from immobile gravel beds could be predicted by scaling the bed shear stress using the cumulative probability distribution of the elevations of the surface of the gravel bed.
DOI: 10.15482/usda.adc/26347789.v1
title: Data from: The effect of a bimodal gravel size distribution on clean-out depth of sand

description: This dataset includes the data in the figures for the article entitled "The effect of a bimodal gravel size distribution on clean-out depth of sand", which is to be published in the Journal of Hydraulic Engineering. The authors are: Kuhnle, R. A., Smith, J. E., Wren, D. G., and Langendoen, E. L.The clogging of the gravel surface layer in gravel-bedded channels with finer sediment (&lt; 2 mm) is a common problem that negatively impacts stream bed habitat quality. Most existing measurements of surface layer sediment clean-out depth are from experiments with narrow gravel size distributions; therefore, a new set of experiments was conducted to explore the effect of widely distributed bimodal gravel fractions on the clean-out depth of interstitial sand. Experiments were used to measure the terminal clean-out depth of 0.136 mm sand from bed material substrates composed of unimodal median diameter gravel of 7.16 mm and bimodal bed material with modes of 7.31 and 34.66 mm and a median diameter of 33.46 mm. It was found that the clean-out depth of sand from immobile gravel beds could be predicted by scaling the bed shear stress using the cumulative probability distribution of the elevations of the surface of the gravel bed.
DOI: 10.15468/dl.w58w8x
title: Occurrence Download

description: A dataset containing 1295838 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Ecuador",
 "Geometry POLYGON((-78.79703 -1.02609,-78.92625 -1.03255,-79.45766 -1.98606,-79.55056 -3.15247,-78.81768 -3.40021,-78.35318 -3.13183,-77.14547 -2.61572,-76.66033 -2.48153,-76.67065 -1.95509,-76.50549 -1.42866,-77.25902 -0.80932,-78.79703 -1.02609))"
 ]
}

 The dataset includes 1295838 records from 779 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002981-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aqfyaa
title: Occurrence Download

description: A dataset containing 527480 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence, Living Specimen)",
 "GadmGid is USA.5.19_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 527480 records from 261 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002979-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15271615
title: Siderophore concentrations from Southern Ocean incubation experiments
DOI: 10.5281/zenodo.15271616
title: Siderophore concentrations from Southern Ocean incubation experiments
DOI: 10.6073/pasta/b87c33aae1e74fe18ef52b3582ef37cd
title: Monitoring juvenile Chinook salmon outmigration using rotary screw traps on Yuba River

description: California Department of Water Resources (DWR) currently operates
 multiple eight-foot rotary screw traps (RSTs) at Hallwood Boulevard
 RM 7.5. RST operations were conducted by CDFW and then under the
 direction of the Yuba River Management Team from 1999 to 2009 at the
 Hallwood Boulevard site; and resumed in 2022 by DWR. The Hallwood
 site will essentially sample all areas of the lower Yuba River
 upstream of Hallwood Boulevard. Additionally, the Hallwood site is
 located downstream of the bulk of adult Chinook salmon spawning
 areas and downstream of all known spring-run Chinook salmon
 spawning. Data are currently being used to inform the development of
 a juvenile production estimate (JPE) for spring-run Chinook salmon
 in the Sacramento River Watershed as required by Incidental Take
 Permit No. 2081-2019-006-00 issued by CA Department of Fish and
 Wildlife (CDFW) to DWR for the long-term operation of the State
 Water Project. Data within the current year’s monitoring season are
 considered provisional.
DOI: 10.15468/dl.v43mja
title: Occurrence Download

description: A dataset containing 12274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "StateProvince is New York State (NY)"
 ]
}

 The dataset includes 12274 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011862-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28022852
title: Coherent Energy Transfer in Coupled Nonlinear Microelectromechanical Resonators

description: This dataset is for the figures in "Coherent Energy Transfer in Coupled Nonlinear Microelectromechanical Resonators"
DOI: 10.6084/m9.figshare.28022852.v1
title: Coherent Energy Transfer in Coupled Nonlinear Microelectromechanical Resonators

description: This dataset is for the figures in "Coherent Energy Transfer in Coupled Nonlinear Microelectromechanical Resonators"