cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.106265
title: Additional File 1: Supplementary data t test

description: t test.xlsx: List of P -values from analysis of promoter hypomethylation of miRNA target genes calculated using the t test based on the amount of methylation.
DOI: 10.6084/m9.figshare.106631.v24
title: How to design a genetic mating scheme: a basic training package for Drosophila genetics

description: <strong>Supplementary files for:</strong> Roote, J., and Prokop, A. (2013). How to design a genetic mating scheme: a basic training package for <em>Drosophila</em> genetics. G3 (Bethesda) 3, 353-358. <strong>Abstract:</strong> <em>Drosophila melanogaster</em> is a powerful model organism for biological research. The essential<br>and common instrument of fly research is genetics, the art of applying Mendelian rules in the specific context of Drosophila with its unique classical genetic tools and the breadth of modern genetic tools and strategies brought in by molecular biology, transgenic technologies and the use of recombinases. Training newcomers to fly genetics is a complex and time-consuming task but too important to be left to chance. Surprisingly, suitable training resources for beginners currently are not available. Here we provide a training package for basic Drosophila genetics, designed to ensure that basic knowledge on all key areas is covered while reducing the time invested by trainers. First, a manual introduces to fly history, rationale for mating schemes, fly handling, Mendelian rules in fly, markers and balancers, mating scheme design, and transgenic technologies. Its self-study is followed by a practical training session on gender and marker selection, introducing to real flies in the laboratory. Next, through self-study of a PowerPoint presentation, trainees are guided step-by-step through a mating scheme. Finally, to consolidate knowledge, trainees are asked to design similar mating schemes reflecting routine tasks in a fly laboratory. This exercise requires individual feedback but also provides unique opportunities for trainers to spot weaknesses and strengths of each trainee and take remedial action. This training package is being successfully applied at the Manchester fly facility (5th link below) and may serve as a model for further training resources covering other aspects of fly research. A light version of the manual for teaching on undergraduate genetics courses or training short-term project students can be accessed through the last link below.
DOI: 10.6084/m9.figshare.106264
title: Gaussian Job Archive for C12H13ClN2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106264.v1
title: Gaussian Job Archive for C12H13ClN2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106262
title: Gaussian Job Archive for C12H13ClN2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106263.v1
title: Gaussian Job Archive for C12H13ClN2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106631.v25
title: How to design a genetic mating scheme: a basic training package for Drosophila genetics

description: <strong>Supplementary files for:</strong> Roote, J., and Prokop, A. (2013). How to design a genetic mating scheme: a basic training package for <em>Drosophila</em> genetics. G3 (Bethesda) 3, 353-358. <strong>Abstract:</strong> <em>Drosophila melanogaster</em> is a powerful model organism for biological research. The essential<br>and common instrument of fly research is genetics, the art of applying Mendelian rules in the specific context of Drosophila with its unique classical genetic tools and the breadth of modern genetic tools and strategies brought in by molecular biology, transgenic technologies and the use of recombinases. Training newcomers to fly genetics is a complex and time-consuming task but too important to be left to chance. Surprisingly, suitable training resources for beginners currently are not available. Here we provide a training package for basic Drosophila genetics, designed to ensure that basic knowledge on all key areas is covered while reducing the time invested by trainers. First, a manual introduces to fly history, rationale for mating schemes, fly handling, Mendelian rules in fly, markers and balancers, mating scheme design, and transgenic technologies. Its self-study is followed by a practical training session on gender and marker selection, introducing to real flies in the laboratory. Next, through self-study of a PowerPoint presentation, trainees are guided step-by-step through a mating scheme. Finally, to consolidate knowledge, trainees are asked to design similar mating schemes reflecting routine tasks in a fly laboratory. This exercise requires individual feedback but also provides unique opportunities for trainers to spot weaknesses and strengths of each trainee and take remedial action. This training package is being successfully applied at the Manchester fly facility (5th link below) and may serve as a model for further training resources covering other aspects of fly research. A light version of the manual for teaching on undergraduate genetics courses or training short-term project students can be accessed through the last link below.
DOI: 10.6084/m9.figshare.106252
title: XML-structured metadata from 56 PDFs

description: See the blogpost<br><br>These files are the output of: <em>exiftool -b</em> -XMP *<em>NameofPDF*.pdf</em> <em><br></em> <em>exiftool version 9.10 </em>http://www.sno.phy.queensu.ca/~phil/exiftool/ identifying bibliographic data and links to source PDFs here: http://dx.doi.org/10.6084/m9.figshare.105633
DOI: 10.6084/m9.figshare.106262.v1
title: Gaussian Job Archive for C12H13ClN2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106195
title: Human-readable PDF metadata from 69 PDFs

description: See the corresponding blogpost identifying bibliographic data and links to source PDFs here: http://dx.doi.org/10.6084/m9.figshare.105633
DOI: 10.6084/m9.figshare.106252.v1
title: XML-structured metadata from 56 PDFs

description: See the blogpost<br><br>These files are the output of: <em>exiftool -b</em> -XMP *<em>NameofPDF*.pdf</em> <em><br></em> <em>exiftool version 9.10 </em>http://www.sno.phy.queensu.ca/~phil/exiftool/ identifying bibliographic data and links to source PDFs here: http://dx.doi.org/10.6084/m9.figshare.105633
DOI: 10.6084/m9.figshare.106631.v26
title: How to design a genetic mating scheme: a basic training package for Drosophila genetics

description: <strong>Supplementary files for:</strong> Roote, J., and Prokop, A. (2013). How to design a genetic mating scheme: a basic training package for <em>Drosophila</em> genetics. G3 (Bethesda) 3, 353-358. <strong>Abstract:</strong> <em>Drosophila melanogaster</em> is a powerful model organism for biological research. The essential<br>and common instrument of fly research is genetics, the art of applying Mendelian rules in the specific context of Drosophila with its unique classical genetic tools and the breadth of modern genetic tools and strategies brought in by molecular biology, transgenic technologies and the use of recombinases. Training newcomers to fly genetics is a complex and time-consuming task but too important to be left to chance. Surprisingly, suitable training resources for beginners currently are not available. Here we provide a training package for basic Drosophila genetics, designed to ensure that basic knowledge on all key areas is covered while reducing the time invested by trainers. First, a manual introduces to fly history, rationale for mating schemes, fly handling, Mendelian rules in fly, markers and balancers, mating scheme design, and transgenic technologies. Its self-study is followed by a practical training session on gender and marker selection, introducing to real flies in the laboratory. Next, through self-study of a PowerPoint presentation, trainees are guided step-by-step through a mating scheme. Finally, to consolidate knowledge, trainees are asked to design similar mating schemes reflecting routine tasks in a fly laboratory. This exercise requires individual feedback but also provides unique opportunities for trainers to spot weaknesses and strengths of each trainee and take remedial action. This training package is being successfully applied at the Manchester fly facility (5th link below) and may serve as a model for further training resources covering other aspects of fly research. A light version of the manual for teaching on undergraduate genetics courses or training short-term project students can be accessed through the last link below.
DOI: 10.6084/m9.figshare.105940
title: Gaussian Job Archive for C17H24O4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106194
title: Get PDF metadata using exiftool

description: This simple shell script loops through all .pdf files in your current working directory and exports metadata extracted with <em>exiftool </em>to a plaintext file of the same name as the original but with the extension changed from .pdf to .meta <br>Obviously you'll need to have exiftool downloaded and installed properly beforehand for this to work.
DOI: 10.6084/m9.figshare.106195.v1
title: Human-readable PDF metadata from 69 PDFs

description: See the corresponding blogpost identifying bibliographic data and links to source PDFs here: http://dx.doi.org/10.6084/m9.figshare.105633
DOI: 10.6084/m9.figshare.105940.v1
title: Gaussian Job Archive for C17H24O4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.105936
title: Gaussian Job Archive for C12H14Cl2N2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.105937
title: Gaussian Job Archive for C12H14Cl2N2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.105939
title: Encuesta sobre checklists para pacientes

description: Datos de la encuesta sobre el uso de listados de comprobación específicos para pacientes
DOI: 10.6084/m9.figshare.106631.v27
title: How to design a genetic mating scheme: a basic training package for Drosophila genetics

description: <strong>Supplementary files for:</strong> Roote, J., and Prokop, A. (2013). How to design a genetic mating scheme: a basic training package for <em>Drosophila</em> genetics. G3 (Bethesda) 3, 353-358. <strong>Abstract:</strong> <em>Drosophila melanogaster</em> is a powerful model organism for biological research. The essential<br>and common instrument of fly research is genetics, the art of applying Mendelian rules in the specific context of Drosophila with its unique classical genetic tools and the breadth of modern genetic tools and strategies brought in by molecular biology, transgenic technologies and the use of recombinases. Training newcomers to fly genetics is a complex and time-consuming task but too important to be left to chance. Surprisingly, suitable training resources for beginners currently are not available. Here we provide a training package for basic Drosophila genetics, designed to ensure that basic knowledge on all key areas is covered while reducing the time invested by trainers. First, a manual introduces to fly history, rationale for mating schemes, fly handling, Mendelian rules in fly, markers and balancers, mating scheme design, and transgenic technologies. Its self-study is followed by a practical training session on gender and marker selection, introducing to real flies in the laboratory. Next, through self-study of a PowerPoint presentation, trainees are guided step-by-step through a mating scheme. Finally, to consolidate knowledge, trainees are asked to design similar mating schemes reflecting routine tasks in a fly laboratory. This exercise requires individual feedback but also provides unique opportunities for trainers to spot weaknesses and strengths of each trainee and take remedial action. This training package is being successfully applied at the Manchester fly facility (5th link below) and may serve as a model for further training resources covering other aspects of fly research. A light version of the manual for teaching on undergraduate genetics courses or training short-term project students can be accessed through the last link below.
DOI: 10.6084/m9.figshare.105937.v1
title: Gaussian Job Archive for C12H14Cl2N2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.105939.v1
title: Encuesta sobre checklists para pacientes

description: Datos de la encuesta sobre el uso de listados de comprobación específicos para pacientes
DOI: 10.6084/m9.figshare.106631.v28
title: How to design a genetic mating scheme: a basic training package for Drosophila genetics

description: <strong>Supplementary files for:</strong> Roote, J., and Prokop, A. (2013). How to design a genetic mating scheme: a basic training package for <em>Drosophila</em> genetics. G3 (Bethesda) 3, 353-358. <strong>Abstract:</strong> <em>Drosophila melanogaster</em> is a powerful model organism for biological research. The essential<br>and common instrument of fly research is genetics, the art of applying Mendelian rules in the specific context of Drosophila with its unique classical genetic tools and the breadth of modern genetic tools and strategies brought in by molecular biology, transgenic technologies and the use of recombinases. Training newcomers to fly genetics is a complex and time-consuming task but too important to be left to chance. Surprisingly, suitable training resources for beginners currently are not available. Here we provide a training package for basic Drosophila genetics, designed to ensure that basic knowledge on all key areas is covered while reducing the time invested by trainers. First, a manual introduces to fly history, rationale for mating schemes, fly handling, Mendelian rules in fly, markers and balancers, mating scheme design, and transgenic technologies. Its self-study is followed by a practical training session on gender and marker selection, introducing to real flies in the laboratory. Next, through self-study of a PowerPoint presentation, trainees are guided step-by-step through a mating scheme. Finally, to consolidate knowledge, trainees are asked to design similar mating schemes reflecting routine tasks in a fly laboratory. This exercise requires individual feedback but also provides unique opportunities for trainers to spot weaknesses and strengths of each trainee and take remedial action. This training package is being successfully applied at the Manchester fly facility (5th link below) and may serve as a model for further training resources covering other aspects of fly research. A light version of the manual for teaching on undergraduate genetics courses or training short-term project students can be accessed through the last link below.
DOI: 10.6084/m9.figshare.106631.v29
title: How to design a genetic mating scheme: a basic training package for Drosophila genetics

description: <strong>Supplementary files for:</strong> Roote, J., and Prokop, A. (2013). How to design a genetic mating scheme: a basic training package for <em>Drosophila</em> genetics. G3 (Bethesda) 3, 353-358. <strong>Abstract:</strong> <em>Drosophila melanogaster</em> is a powerful model organism for biological research. The essential<br>and common instrument of fly research is genetics, the art of applying Mendelian rules in the specific context of Drosophila with its unique classical genetic tools and the breadth of modern genetic tools and strategies brought in by molecular biology, transgenic technologies and the use of recombinases. Training newcomers to fly genetics is a complex and time-consuming task but too important to be left to chance. Surprisingly, suitable training resources for beginners currently are not available. Here we provide a training package for basic Drosophila genetics, designed to ensure that basic knowledge on all key areas is covered while reducing the time invested by trainers. First, a manual introduces to fly history, rationale for mating schemes, fly handling, Mendelian rules in fly, markers and balancers, mating scheme design, and transgenic technologies. Its self-study is followed by a practical training session on gender and marker selection, introducing to real flies in the laboratory. Next, through self-study of a PowerPoint presentation, trainees are guided step-by-step through a mating scheme. Finally, to consolidate knowledge, trainees are asked to design similar mating schemes reflecting routine tasks in a fly laboratory. This exercise requires individual feedback but also provides unique opportunities for trainers to spot weaknesses and strengths of each trainee and take remedial action. This training package is being successfully applied at the Manchester fly facility (5th link below) and may serve as a model for further training resources covering other aspects of fly research. A light version of the manual for teaching on undergraduate genetics courses or training short-term project students can be accessed through the last link below.
DOI: 10.6084/m9.figshare.105921
title: Gaussian Job Archive for C13H15N3O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.105920
title: BioMedCentral APC fees - a comparison between 2012 & 2013

description: I noticed APC's have risen at many BMC journals.<br><br>Luckily I had data from last year saved on my computer to compare the new prices with.<br><br>Of the 97 journals I've compared here (not all of them), the mean price increase is <strong>just over 5%</strong>.<br><br>To be fair to BMC, some of the biggest price hikes appear to be from society journals e.g. <em>Journal of Physiological Anthropology </em>(An official journal of the Japan Society of Physiological Anthropology) and thus the price hike is probably the society decision rather than BMC's doing. Still... prices have risen :S<br><br>Kudos though to <em>Malaria Journal </em>for actually decreasing its APC by over 6% . Perhaps this is because there is strong competition in this subject area from other OA journals like <em>The MalariaWorld Journal </em>(http://www.malariaworld.org/mwj)<br><br><br>In my haste to upload this data, I also included data on SpringerOpen APC prices from 2012 in Sheet 2 and Hindawi APC prices from 2012 in Sheet 3. Thanks to Richard Poynder for spotting this!<br><br>At some point I may update this spreadsheet to compare 2012 & 2013 prices of these publishers too (or you're welcome to do this yourself if you wish - that's the joy of Open Data) :)
DOI: 10.6084/m9.figshare.105922
title: Gaussian Job Archive for C20H20O4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.105922.v1
title: Gaussian Job Archive for C20H20O4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.105921.v1
title: Gaussian Job Archive for C13H15N3O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.105914
title: Gaussian Job Archive for C7H14O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.105914.v1
title: Gaussian Job Archive for C7H14O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.105915
title: Gaussian Job Archive for C6H12O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.105915.v1
title: Gaussian Job Archive for C6H12O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.105916
title: Gaussian Job Archive for C4H8O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.105916.v1
title: Gaussian Job Archive for C4H8O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.105912
title: Temperature data

description: Air temperature against time
DOI: 10.6084/m9.figshare.105913
title: Gaussian Job Archive for C5H10O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.105910
title: A-Ci curves from gas exchange at 26-37°C

description: CO2(out)=CO2 concentration in the ambient<br>CO2(diff)=CO2 concentration difference between the ambient and leaf cuvette<br>Light=photo flux density<br>H2O(out)=water vapor pressure in the ambient<br>H20(diff)=water vapor pressure difference between the ambient and leaf cuvette<br>Cuvette temp.=temperature in the cuvette<br>L area=leaf area<br>Flow=flow rate<br>Evap=transpiration rate<br>Cond=stomatal conductance<br>Leaf T=leaf temperature<br>A=net photosynthetic rate<br>Ci=intercellular CO2 concentration
DOI: 10.6084/m9.figshare.105911
title: PSII efficiency-CO2 curves

description: Fs=stable fluorescence intensity<br>Fm'=maximal fluorescence intensity in light<br>(Fm'-Fs)/Fm'=actual PSII efficiency in light
DOI: 10.6084/m9.figshare.105911.v1
title: PSII efficiency-CO2 curves

description: Fs=stable fluorescence intensity<br>Fm'=maximal fluorescence intensity in light<br>(Fm'-Fs)/Fm'=actual PSII efficiency in light
DOI: 10.6084/m9.figshare.105913.v1
title: Gaussian Job Archive for C5H10O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.105910.v1
title: A-Ci curves from gas exchange at 26-37°C

description: CO2(out)=CO2 concentration in the ambient<br>CO2(diff)=CO2 concentration difference between the ambient and leaf cuvette<br>Light=photo flux density<br>H2O(out)=water vapor pressure in the ambient<br>H20(diff)=water vapor pressure difference between the ambient and leaf cuvette<br>Cuvette temp.=temperature in the cuvette<br>L area=leaf area<br>Flow=flow rate<br>Evap=transpiration rate<br>Cond=stomatal conductance<br>Leaf T=leaf temperature<br>A=net photosynthetic rate<br>Ci=intercellular CO2 concentration
DOI: 10.6084/m9.figshare.105888
title: Table of beech cpDNA haplotypes: fragment length of 3 primer sets

description: This is a table describing the cpDNA haplotypes found in beech (<em>Fagus sylvatica</em>) populations in Greece and European Turkey. Three primer sets were used (ccmp4, 7 and 10) and the length of the fragments is listed for each haplotype. This table is taken from the article "High chloroplast haplotype diversity in Greek populations of beech (Fagus sylvatica L.), by S.Hatziskakis, A.C.Papageorgiou, O.Gailing, R.Finkeldey, Plant Biology, Volume 11, Issue 3, pages 425–433, May 2009".
DOI: 10.6084/m9.figshare.105895.v2
title: Exploring the Social Networks of Bats

description: This poster was presented at the 2013 International Biogeography Conference in Miami