cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17028/rd.lboro.15773247.v1
title: Supplementary Information Files for The utility of Google Trends as a tool for evaluating flooding in data‐scarce places

description: Supplementary Information Files for The utility of Google Trends as a tool for evaluating flooding in data‐scarce places<br>Google Trends (GT) offers an historical database of global internet searches with the potential to compliment conventional records of environmental hazards, especially in regions where formal hydrometeorological data are scarce. We evaluate the extent to which GT can discern heavy rainfall and floods in Kenya and Uganda during the period 2014 to 2018. We triangulate counts of flood searches from GT with available rainfall records and media reports to build an inventory of extreme events. The Spearman rank correlation (rho) between monthly mean search interest for flooding and monthly Climate Hazards Group InfraRed Precipitation with Station (CHIRPS) rainfall totals was rho = +0.38 (p &lt; 0.005) for Kenya and rho = +0.64 (p &lt; 0.001) for Uganda. Media reports of flooding were used to specify a threshold of detectability to give the same overall frequency of floods based on GT search interest. When the GT search index threshold was set at ≥15 and ≥29 the correct detection rate was 75% and 64% within a five‐day window of known flood events in Kenya and Uganda, respectively. From these preliminary explorations we conclude that GT has potential as a proxy data source, but greater skill may emerge in places with larger search volumes and by linking to historical information about environmental hazards at sub‐national scales. Wider applicability of the GT platform might be possible if there is greater transparency about how Google algorithms determine topics.<br>
DOI: 10.15468/v3zq84
title: Three new species of the extinct spider genus Furcembolus (Araneae: Pacullidae) from Late Cretaceous Burmese amber

description: This dataset contains the digitized treatments in Plazi based on the original journal article Xin, Yafei, Jiang, Tongyao, Yao, Zhiyuan, Li, Shuqiang (2021): Three new species of the extinct spider genus Furcembolus (Araneae: Pacullidae) from Late Cretaceous Burmese amber. Zootaxa 4984 (1): 258-273, DOI: https://doi.org/10.11646/zootaxa.4984.1.19
DOI: 10.6084/m9.figshare.11888157
title: 9. DataInBrief: bacterial AntiSMASH annotated contigs, raw data

description: Bacterial antiSMASH results of contig annotations Cancel
DOI: 10.5519/qd.as6spxb5
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (4892724 records)
DOI: 10.5258/soton/d1609
title: Coastal flood risk ready household survey data

description: Data linked to University of Southampton Doctoral Thesis. Managing Coastal Flood Risk in England: An Analysis of Policy, Organisational and Household Perspectives Data collected from household questionnaires 143 in Lincolnshire (UK) in 2019.
DOI: 10.5517/ccdc.csd.cc269vyb
title: CCDC 2035272: Experimental Crystal Structure Determination

description: Related Article: He Yuan|2020|CSD Communication|||
description: Related Article: Yuan He, Zilong Huang, Juan Ma, Fei Huang, Jie Lin, Hongmei Wang, Bao-Hua Xu, Yong-Gui Zhou, Zhengkun Yu|2021|Org.Lett.|23|6110|doi:10.1021/acs.orglett.1c02172
DOI: 10.5517/ccdc.csd.cc26qjwc
title: CCDC 2047453: Experimental Crystal Structure Determination

description: Related Article: Jingjing Jiao, Jinqiao Dong, Yingguo Li, Yong Cui|2021|Angew.Chem.,Int.Ed.|60|16568|doi:10.1002/anie.202104111
DOI: 10.5517/ccdc.csd.cc2722n2
title: CCDC 2057583: Experimental Crystal Structure Determination

description: Related Article: Can Zhang, Jianbin Li, Xin Wang, Xuan Shen, Dunru Zhu, Ruwei Shen|2021|J.Org.Chem.|86|10397|doi:10.1021/acs.joc.1c01083
DOI: 10.5517/ccdc.csd.cc2722p3
title: CCDC 2057584: Experimental Crystal Structure Determination

description: Related Article: Can Zhang, Jianbin Li, Xin Wang, Xuan Shen, Dunru Zhu, Ruwei Shen|2021|J.Org.Chem.|86|10397|doi:10.1021/acs.joc.1c01083
DOI: 10.5281/zenodo.5226935
title: Odontometric Data from of all Tooth Types from Skeletal Collections in South Africa

description: Biological profiles are used to assist in the identification of an unknown person. Sex estimation is important in this process as other aspects of the biological profile such as age-at-death, population affinity and stature depend on accurate sex estimates. For this research, we estimated sex using the dentition of three socially identified South African groups, namely black, white and coloured South Africans. A total of 906 crania from dissection room cadavers from three medical schools, including the Pretoria Bone Collection (University of Pretoria), the Raymond A Dart Collection (University of Witwatersrand) and the Kristen Collection (Stellenbosch University) were used. Four measurements were taken from the left and right sides of incisors, canines, premolars and molars. Measurements were standard from Hillson 2005 and include four permanent tooth crown dimensions: maximum mesiodistal, maximum buccolingual and molar diagonal diameters (mesiobuccal - distolingual and mesiolingual - distobuccal).
DOI: 10.5281/zenodo.5226934
title: Odontometric Data from of all Tooth Types from Skeletal Collections in South Africa

description: Biological profiles are used to assist in the identification of an unknown person. Sex estimation is important in this process as other aspects of the biological profile such as age-at-death, population affinity and stature depend on accurate sex estimates. For this research, we estimated sex using the dentition of three socially identified South African groups, namely black, white and coloured South Africans. A total of 906 crania from dissection room cadavers from three medical schools, including the Pretoria Bone Collection (University of Pretoria), the Raymond A Dart Collection (University of Witwatersrand) and the Kristen Collection (Stellenbosch University) were used. Four measurements were taken from the left and right sides of incisors, canines, premolars and molars. Measurements were standard from Hillson 2005 and include four permanent tooth crown dimensions: maximum mesiodistal, maximum buccolingual and molar diagonal diameters (mesiobuccal - distolingual and mesiolingual - distobuccal).
DOI: 10.5258/soton/d1610
title: Coastal flood risk ready stakeholder survey

description: Data linked to University of Southampton Doctoral Thesis PhD thesis. Managing Coastal Flood Risk in England: An Analysis of Policy, Organisational and Household Perspectives Data collected in 2019 in Lincolnshire (UK) from key stakeholders working in coastal flood risk management.
DOI: 10.5281/zenodo.5216849
title: Deep learning and surge predictions in coastal areas dataset

description: To improve coastal adaptation and management, it is critical to better understand and predict the characteristics of sea levels. Here, we present a dataset of four deep learning methods to predict the surge component of sea-level variability based on local atmospheric conditions. We use an Artificial Neural Networks (ANN), Convolutional Neural Network (CNN), Long Short-Term Memory layer (LSTM) and a combination of the latter two (ConvLSTM), to construct ensembles of Neural Network (NN) models at 736 tide stations globally. The NN models show similar patterns of performance, with much higher skill in the mid-latitudes. Using our global model settings, the LSTM generally outperforms the other NN models. While we focus on minimising mean absolute error for the full time series, the NN models presented here could be adapted for use in forecasting extreme sea levels or emergency response.
DOI: 10.5258/soton/d1833
title: Dataset for: The response of common minnow (Phoxinus phoxinus) to visual cues under flowing and static water conditions

description: This dataset supports the publication: Miles, James, Volwes, Andrew S. & Kemp, Paul S. (2021). The response of common minnow (Phoxinus phoxinus) to visual cues under flowing and static water conditions. Animal Behaviour.
DOI: 10.6084/m9.figshare.15101649
title: Phenotypes for all F2 individuals

description: Text file containing the phenotypes for F2 individuals exposed to an extreme low salinity challenge (2.5 ppt and 27C) for 36 days. Column headers are:Individual = individual IDFamily = F2 familySurv = survival phenotype (1 = dead, 0 = alive)Daydead = day of death (day 1-36, NaN = survived challenge)Len(mm) = individual height (mm)
DOI: 10.6084/m9.figshare.15784023
title: Bugajev_101118_0_D23_000002.d.zip

description: raw mass spectrometry data related to the:<b>Crosstalk between ORMDL3, serine palmitoyltransferase, and 5-lipoxygenase in the sphingolipid and eicosanoid metabolic pathways</b> <br>
DOI: 10.5281/zenodo.5226945
title: Cats and Dogs sample

description: Small sample of the Kaggle Cats and Dogs dataset (https://www.kaggle.com/c/dogs-vs-cats/data). Contains 1000 images for the train set (500 cats and 500 dogs), and 400 images for the test set (200 each).
DOI: 10.5281/zenodo.5226944
title: Cats and Dogs sample

description: Small sample of the Kaggle Cats and Dogs dataset (https://www.kaggle.com/c/dogs-vs-cats/data). Contains 1000 images for the train set (500 cats and 500 dogs), and 400 images for the test set (200 each).
DOI: 10.34740/kaggle/dsv/2544067
title: COVID Vaccination in World (updated daily)
DOI: 10.6084/m9.figshare.15784023.v1
title: Bugajev_101118_0_D23_000002.d.zip

description: raw mass spectrometry data related to the:<b>Crosstalk between ORMDL3, serine palmitoyltransferase, and 5-lipoxygenase in the sphingolipid and eicosanoid metabolic pathways</b> <br>
DOI: 10.25405/data.ncl.15357597.v1
title: z_scan_data_for_MDNI_paper.zip

description: Data from publication https://doi.org/10.1021/acsphotonics.1c00687
DOI: 10.25405/data.ncl.15357597
title: z_scan_data_for_MDNI_paper.zip

description: Data from publication https://doi.org/10.1021/acsphotonics.1c00687
DOI: 10.6084/m9.figshare.15101667
title: Raw SNP files and filtered rQTL files for each family

description: Following the dDocent pipeline, sequences were trimmed, mapped to the eastern oyster genome, SNPs were called using FreeBayes, and SNPs were filtered (reference the manuscript for details), individual sequences were separated into groups by family. Each family .vcf file was loaded into Onemap independently: FamX_raw.onemap.vcf files above. <br>After linkage map creation and marker ordering in Onemap, markers were thinned for downstream QTL mapping. The ordered, thinned marker files were then converted to Rqtl 4-way cross format for each family: FamX_thinned_bypos_rQTL.csv.
DOI: 10.6084/m9.figshare.15101685
title: Onemap to rQTL 4-way cross text file conversion script

description: R Notebook markdown file and data environment containing the script for converting the Onemap output into the 4-way cross format for rQTL from the associated manuscript: Onemap_rQTL_filechange.Rmd, Onemao_rQTL_filechange.RData<br><br>The example data used in the script are also included: Example_geno_file.txtExample_phen.txtExample_map_file.txt<br>Lastly, a link to the GitHub page with detailed notes are also included: Notes_GitHubLink.txt
DOI: 10.3886/e147941
title: Side Effects of Motivational Interventions? Effects of an Intervention in Math Classrooms on Motivation in Verbal Domains

description: One way to address the leaking pipeline toward STEM-related careers (i.e., science, technology, engineering, and mathematics) is to intervene on students’ STEM motivation in school. However, a neglected question in intervention research is how such interventions affect motivation in subjects not targeted by the intervention. This question was addressed through data from a cluster-randomized study in which a value intervention was successfully implemented in 82 ninth-grade math classrooms. Side effects on value, self-concept, and effort in German as students’ native language and English as a foreign language were assessed 6 weeks and 5 months after the intervention. Negative effects on value for German, but not for English, were found 5 months after the intervention. The theoretical and educational implications of such effects are discussed.<br><br>
DOI: 10.3886/e147941v1
title: Side Effects of Motivational Interventions? Effects of an Intervention in Math Classrooms on Motivation in Verbal Domains

description: One way to address the leaking pipeline toward STEM-related careers (i.e., science, technology, engineering, and mathematics) is to intervene on students’ STEM motivation in school. However, a neglected question in intervention research is how such interventions affect motivation in subjects not targeted by the intervention. This question was addressed through data from a cluster-randomized study in which a value intervention was successfully implemented in 82 ninth-grade math classrooms. Side effects on value, self-concept, and effort in German as students’ native language and English as a foreign language were assessed 6 weeks and 5 months after the intervention. Negative effects on value for German, but not for English, were found 5 months after the intervention. The theoretical and educational implications of such effects are discussed.<br><br>
DOI: 10.5281/zenodo.5227034
title: SNAP Authorized dollar stores

description: SNAP authorized dollar stores
DOI: 10.5281/zenodo.5227033
title: SNAP Authorized dollar stores

description: SNAP authorized dollar stores
DOI: 10.6084/m9.figshare.15113211
title: GWAS/GS data files

description: Filtered SNP data for four F2 families exposed to an acute low salinity challenge. <br>File used in TASSEL GWAS: FilteredSNPs.vcf <br>File used for GS analysis in BGLR: GWAS_GS_markers.vcfThe vcf file (GWAS_GS_markers.vcf) was converted to .bed format using PLINK for easier upload into BGLR: GS_markers.bed, GS_markers.fam, GS_markers.bim
DOI: 10.15121/1148829
title: Hot Pot Mercury Concentration Map

description: Location of sample points and analytical results for mercury concentrations from a soil survey.
DOI: 10.5519/qd.j8rndd7d
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (21 records)
DOI: 10.6084/m9.figshare.15505848.v2
title: IMS raw data for mice brain

description: Mice were fed with normal carbohydrate diet (ND) or ketogenic diet (KD) for 2 weeks. Then mice were infused with either 13C labeled tracer or 15N labeled tracer. Brain was collected for IMS analysis.
DOI: 10.6084/m9.figshare.15505848
title: IMS raw data for mice brain

description: Mice were fed with normal carbohydrate diet (ND) or ketogenic diet (KD) for 2 weeks. Then mice were infused with either 13C labeled tracer or 15N labeled tracer. Brain was collected for IMS analysis.
DOI: 10.18112/openneuro.ds003772.v1.0.0
title: Functionally dissociable influences on learning rate in a dynamic environment
DOI: 10.13012/b2idb-8293871_v1
title: Maize and Sorghum Establishment and Yield following Pre-Emergence Waterlogging

description: In 2020, early-season extreme precipitation events occurred following the planting of Sorghum bicolor (L.) Moench and Zea mays L. in central Illinois that caused ponding. Following the first rainfall event 50m transects were established to assess the waterlogging effects on seedling emergence and crop yields. Soil moisture, emergence, stem and tiller count, LAI, and yield were measured at various points in the season along these transects.
DOI: 10.25386/genetics.13168952
title: Supplemental Material for Legarra et al., 2021

description: Detailed derivations accompanying the paper "THE CORRELATION OF SUBSTITUTION EFFECTS ACROSS POPULATIONS AND GENERATIONS IN THE PRESENCE OF NON-ADDITIVE FUNCTIONAL GENE ACTION"
DOI: 10.25386/genetics.13168952.v1
title: Supplemental Material for Legarra et al., 2021

description: Detailed derivations accompanying the paper "THE CORRELATION OF SUBSTITUTION EFFECTS ACROSS POPULATIONS AND GENERATIONS IN THE PRESENCE OF NON-ADDITIVE FUNCTIONAL GENE ACTION"
DOI: 10.5517/ccdc.csd.cc24p5hj
title: CCDC 1986557: Experimental Crystal Structure Determination

description: Related Article: Wen Luo, Xian-Ping Shu, Pei-Yi Liu, Shuai-Kang Yu, Qin-Yu Zhu, Jie Dai|2020|J.Mol.Liq.|317|113946|doi:10.1016/j.molliq.2020.113946
DOI: 10.5517/ccdc.csd.cc24p5jk
title: CCDC 1986558: Experimental Crystal Structure Determination

description: Related Article: Wen Luo, Xian-Ping Shu, Pei-Yi Liu, Shuai-Kang Yu, Qin-Yu Zhu, Jie Dai|2020|J.Mol.Liq.|317|113946|doi:10.1016/j.molliq.2020.113946
DOI: 10.5517/ccdc.csd.cc27m0yv
title: CCDC 2073867: Experimental Crystal Structure Determination

description: Related Article: Yuan He, Zilong Huang, Juan Ma, Fei Huang, Jie Lin, Hongmei Wang, Bao-Hua Xu, Yong-Gui Zhou, Zhengkun Yu|2021|Org.Lett.|23|6110|doi:10.1021/acs.orglett.1c02172
DOI: 10.5517/ccdc.csd.cc27m10y
title: CCDC 2073869: Experimental Crystal Structure Determination

description: Related Article: Yuan He, Zilong Huang, Juan Ma, Fei Huang, Jie Lin, Hongmei Wang, Bao-Hua Xu, Yong-Gui Zhou, Zhengkun Yu|2021|Org.Lett.|23|6110|doi:10.1021/acs.orglett.1c02172
DOI: 10.5517/ccdc.csd.cc27mwzr
title: CCDC 2074705: Experimental Crystal Structure Determination

description: Related Article: Stephanie J. Urwin, Gary S. Nichol, Michael J. Cowley|2021|Organometallics|40|2375|doi:10.1021/acs.organomet.1c00278
DOI: 10.5517/ccdc.csd.cc27qp9z
title: CCDC 2077381: Experimental Crystal Structure Determination

description: Related Article: Yuan He, Zilong Huang, Juan Ma, Fei Huang, Jie Lin, Hongmei Wang, Bao-Hua Xu, Yong-Gui Zhou, Zhengkun Yu|2021|Org.Lett.|23|6110|doi:10.1021/acs.orglett.1c02172
DOI: 10.5517/ccdc.csd.cc27sbq3
title: CCDC 2078975: Experimental Crystal Structure Determination

description: Related Article: Andrew C. Dunbar, Joseph C. Wright, Daniel J. Grant, Gregory S. Girolami|2021|Inorg.Chem.|60|12489|doi:10.1021/acs.inorgchem.1c01710
DOI: 10.5517/ccdc.csd.cc27t71c
title: CCDC 2079822: Experimental Crystal Structure Determination

description: Related Article: Kevin A. Scott, Jeffrey R. Groch, Isaac Chogii, Michael D. Delost, Pradipta Das, Jon T. Njardarson|2021|J.Org.Chem.|86|10555|doi:10.1021/acs.joc.1c01211
DOI: 10.5517/ccdc.csd.cc1kq4p3
title: CCDC 1451255: Experimental Crystal Structure Determination

description: Related Article: Kevin A. Scott, Jeffrey R. Groch, Isaac Chogii, Michael D. Delost, Pradipta Das, Jon T. Njardarson|2021|J.Org.Chem.|86|10555|doi:10.1021/acs.joc.1c01211
DOI: 10.5519/qd.2rxbubvf
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (19 records)
DOI: 10.6084/m9.figshare.15816074
title: Comprehensive sequence and structure analysis of algal lipid catabolic enzyme Triacylglycerol lipase: an <i>in silico</i> study to vitalize the development of optimum engineered strains with high lipid productivity

description: Microalgae as an alternative renewable resource for biofuel production have captured much significance. Nonetheless, its economic viability is a field of major concern for researchers. Unraveling the lipid catabolic pathway and gaining insights into the sequence-structural features of its primary functioning enzyme, Triacylglycerol lipase, will impart valuable information to target microalgae for augmented lipid content. In the present study, a genome-wide comparative study on putative Triacylglycerol lipase (TAGL) enzyme from algal species belonging to varied phylogenetic lineages was performed. The comprehensive sequence analysis revealed that TAGL comprises of three distinct conserved domains, such as, Patatin, Class III Lipase, and Abhydro_lipase, and also confirmed the ubiquitous presence of GXSXG motif in the sequences analyzed. In the absence of a crystal structure of algal TAGL till date, we developed the first 3D model of patatin domain of TAGL from an oleaginous microalga, <i>Phaedactylum tricornutum</i>, employing homology modeling, docking and molecular dynamic simulations methods. The domain-substrate complex having the low-ranking docking score revealed the binding of palmitic acid to the TAGL patatin domain surface with strong hydrogen bond interactions. The simulation results implied that the substrate-complexed patatin domain and the free enzyme adopted a more stable conformation after 40 ns. This is the first ever attempt to provide <i>in-silico</i> insights into the structural and dynamical insights on catalytic mechanism of the TAGL patatin domain. Subsequently, these findings aided our understanding on their structural stability, folding mechanism and protein-substrate interactions, which could be further utilized to design site-specific mutagenic experiments for engineering microalgal strains. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.15816074.v1
title: Comprehensive sequence and structure analysis of algal lipid catabolic enzyme Triacylglycerol lipase: an <i>in silico</i> study to vitalize the development of optimum engineered strains with high lipid productivity

description: Microalgae as an alternative renewable resource for biofuel production have captured much significance. Nonetheless, its economic viability is a field of major concern for researchers. Unraveling the lipid catabolic pathway and gaining insights into the sequence-structural features of its primary functioning enzyme, Triacylglycerol lipase, will impart valuable information to target microalgae for augmented lipid content. In the present study, a genome-wide comparative study on putative Triacylglycerol lipase (TAGL) enzyme from algal species belonging to varied phylogenetic lineages was performed. The comprehensive sequence analysis revealed that TAGL comprises of three distinct conserved domains, such as, Patatin, Class III Lipase, and Abhydro_lipase, and also confirmed the ubiquitous presence of GXSXG motif in the sequences analyzed. In the absence of a crystal structure of algal TAGL till date, we developed the first 3D model of patatin domain of TAGL from an oleaginous microalga, <i>Phaedactylum tricornutum</i>, employing homology modeling, docking and molecular dynamic simulations methods. The domain-substrate complex having the low-ranking docking score revealed the binding of palmitic acid to the TAGL patatin domain surface with strong hydrogen bond interactions. The simulation results implied that the substrate-complexed patatin domain and the free enzyme adopted a more stable conformation after 40 ns. This is the first ever attempt to provide <i>in-silico</i> insights into the structural and dynamical insights on catalytic mechanism of the TAGL patatin domain. Subsequently, these findings aided our understanding on their structural stability, folding mechanism and protein-substrate interactions, which could be further utilized to design site-specific mutagenic experiments for engineering microalgal strains. Communicated by Ramaswamy H. Sarma
DOI: 10.5281/zenodo.5227216
title: NCI60

description: NCI60 PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/pset/10.5281/zenodo.5227216 <strong>Disclaimer</strong> The NCI60 data were generated and shared by the US National Cancer Institute. The Haibe-Kains Lab has reprocessed and re-annotated the data to maximize overlap with other pharmacogenomic datasets. <strong>Data Usage Policy</strong> The data are provided under Creative Commons BY 4.0 license. Please note: The data files are experimental and academic in nature and are not licensed or certified by any regulatory body. <strong>Please cite the following when using these data</strong> Shoemaker, R. The NCI60 human tumour cell line anticancer drug screen. Nat Rev Cancer 6, 813–823 (2006). https://doi.org/10.1038/nrc1951