cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5683/sp2/zmecka
title: Data from: Genotyping-in-Thousands by sequencing reveals marked population structure in Western Rattlesnakes to inform conservation status

description: AbstractDelineation of units below the species level is critical for prioritizing conservation actions for species at-risk. Genetic studies play an important role in characterizing patterns of population connectivity and diversity to inform the designation of conservation units, especially for populations that are geographically isolated. The northernmost range margin of Western Rattlesnakes (Crotalus oreganus) occurs in British Columbia, Canada, where it is federally classified as threatened and restricted to five geographic regions. In these areas, Western Rattlesnakes hibernate (den) communally, raising questions about connectivity within and between den complexes. At present, Western Rattlesnake conservation efforts are hindered by a complete lack of information on genetic structure and degree of isolation at multiple scales, from the den to the regional level. To fill this knowledge gap, we used Genotyping-in-Thousands by sequencing (GT-seq) to genotype an optimized panel of 362 single nucleotide polymorphisms (SNPs) from individual samples (n = 461) collected across the snake’s distribution in western Canada and neighboring Washington (USA). Hierarchical STRUCTURE analyses found evidence for population structure within and among the five geographic regions in BC, as well as in Washington. Within these regions, 11 genetically distinct complexes of dens were identified, with some regions having multiple complexes. No significant pattern of isolation-by-distance and generally low levels of migration were detected among den complexes across regions. Additionally, snakes within dens generally were more related than those among den complexes within a region, indicating limited movement. Overall, our results suggest that the single, recognized designatable unit for Western Rattlesnakes in Canada should be re-assessed to proactively focus conservation efforts on preserving total genetic variation detected range wide. More broadly, our study demonstrates a novel application of GT-seq for investigating patterns of diversity in wild populations at multiple scales to better inform conservation management.
DOI: 10.5683/sp2/km7mvg
title: Data from: Geographic shifts in the effects of habitat size on trophic structure and decomposition

description: AbstractHabitat size is known to affect community structure and ecosystem function, but few studies have examined the underlying mechanisms over sufficient size gradients or in enough geographic contexts to determine their generality. Our goal in this study was to determine if the relationship between habitat size and leaf decomposition varied across geographic sites, and which factors may be driving the differences. We conducted replicated observations in a coastal forest in Brazil, and in rainforests in Costa Rica and Puerto Rico. We used leaf litter decomposition and macroinvertebrate composition in bromeliad phytotelmata of varying sizes to determine the relationships between habitat size, trophic structure and decomposition over a wide geographical range. We experimentally disentangled the effects of site and litter quality by quantifying invertebrate control of decomposition of a native and a transplanted litter type within one site. We found that the relationship between bromeliad size and decomposition rates differed among study sites. In rainforests in Costa Rica and Puerto Rico, decomposition was strongly linked to macroinvertebrate trophic structure, which varies with bromeliad size, driving strong bromeliad size-decomposition relationships. However, in Brazil there was no relationship between bromeliad size and decomposition. Our manipulative experiment suggests that within coastal forest in Brazil, the poor quality of native litter resulted in little invertebrate control of decomposition. Furthermore, the key detritivore in this site builds a predator-resistant case, which likely prevented effects of bromeliad size on trophic structure from being transmitted to decomposition even when litter quality was increased. We conclude that differences in both leaf litter quality and macroinvertebrate traits among sites determine the link between decomposition and macroinvertebrates, and consequently the decomposition-bromeliad size relationship. These results show that the response of decomposition to habitat size is context-dependent, and depends on which component of the food web is the main driver of the function.
DOI: 10.5683/sp2/qis2yo
title: Data from: Global origins of invasive brown rats (Rattus norvegicus) in the Haida Gwaii archipelago

description: AbstractBrown rats (Rattus norvegicus) have commensally spread from northern China and Mongolia to become among the most invasive species on the planet. Understanding the proximate source(s) of invasion can inform biosecurity plans and eradication strategies for preventing or mitigating impacts to native biodiversity. The Haida Gwaii archipelago, located off the coast of British Columbia, Canada, is a significant nesting site for 1.5 million seabirds across 12 species, half of which are now threatened by brown rats. Local knowledge points to a European origin in the late 1800’s to early 1900’s, though the true source(s) and firm date(s) of invasion remain unknown. To fill these knowledge gaps, we analyzed genotypic data (16,598 SNPs) for 280 brown rats sampled throughout Haida Gwaii relative to a published global database of potential source populations. Principle component analysis and population assignment tests supported multiple potential invasion sources from Europe and North America. Likewise, demographic modelling best supported two invasions into the islands. The first invasion likely occurred in the early 1900’s into the south-central archipelago from Western Europe followed by a more recent invasion in the early 2000’s from Vancouver, British Columbia, into northern Haida Gwaii. The northern invasion of Haida Gwaii could also be indicative of contemporary gene flow between Haida Gwaii and the mainland, representing a significant biosecurity risk. Our results will inform management strategies for invasive rats in Haida Gwaii, and serve as a guide for studies in other isolated systems worldwide.
DOI: 10.5683/sp2/gutzhu
title: Data from: GlobTherm, a global database on thermal tolerances for aquatic and terrestrial organisms

description: AbstractHow climate affects species distributions is a longstanding question receiving renewed interest owing to the need to predict the impacts of global warming on biodiversity. Is climate change forcing species to live near their critical thermal limits? Are these limits likely to change through natural selection? These and other important questions can be addressed with models relating geographical distributions of species with climate data, but inferences made with these models are highly contingent on non-climatic factors such as biotic interactions. Improved understanding of climate change effects on species will require extensive analysis of thermal physiological traits, but such data are scarce and scattered. To overcome current limitations, we created the GlobTherm database. The database contains experimentally derived species’ thermal tolerance data currently comprising over 2,000 species of terrestrial, freshwater, intertidal and marine multicellular algae, pl ants, fungi, and animals. The GlobTherm database will be maintained and curated by iDiv with the aim of expanding it, and enable further investigations on the effects of climate on the distribution of life on Earth.
DOI: 10.5683/sp2/zp3fb0
title: Data from: Grizzly bear response to fine spatial and temporal scale spring snow cover in Western Alberta

description: AbstractSnow dynamics influence seasonal behaviors of wildlife, such as denning patterns and habitat selection related to the availability of food resources. Under a changing climate, characteristics of the temporal and spatial patterns of snow are predicted to change, and as a result, there is a need to better understand how species interact with snow dynamics. This study examines grizzly bear (Ursus arctos) spring habitat selection and use across western Alberta, Canada. Made possible by newly available fine-scale snow cover data, this research tests a hypothesis that grizzly bears select for locations with less snow cover and areas where snow melts sooner during spring (den emergence to May 31st). Using Integrated Step Selection Analysis, a series of models were built to examine whether snow cover information such as fractional snow covered area and date of snow melt improved models constructed based on previous knowledge of grizzly bear selection during the spring. Comparing four different models fit to 62 individual bear-years, we found that the inclusion of fractional snow covered area improved model fit 60% of the time based on Akaike Information Criterion tallies. Probability of use was then used to evaluate grizzly bear habitat use in response to snow and environmental attributes, including fractional snow covered area, date since snow melt, elevation, and distance to road. Results indicate grizzly bears select for lower elevation, snow-free locations during spring, which has important implications for management of threatened grizzly bear populations in consideration of changing climatic conditions. This study is an example of how fine spatial and temporal scale remote sensing data can be used to improve our understanding of wildlife habitat selection and use in relation to key environmental attributes.
DOI: 10.5683/sp2/musnjz
title: Data from: Group elicitations yield more consistent, yet more uncertain experts in understanding risks to ecosystem services in New Zealand bays

description: AbstractThe elicitation of expert judgment is an important tool for assessment of risks and impacts in environmental management contexts, and especially important as decision-makers face novel challenges where prior empirical research is lacking or insufficient. Evidence-driven elicitation approaches typically involve techniques to derive more accurate probability distributions under fairly specific contexts. Experts are, however, prone to overconfidence in their judgements. Group elicitations with diverse experts can reduce expert overconfidence by allowing cross-examination and reassessment of prior judgements, but groups are also prone to uncritical “groupthink” errors. When the problem context is underspecified the probability that experts commit groupthink errors may increase. This study addresses how structured workshops affect expert variability among and certainty within responses in a New Zealand case study. We find that experts’ risk estimates before and after a workshop differ, and that group elicitations provided greater consistency of estimates, yet also greater uncertainty among experts, when addressing prominent impacts to four different ecosystem services in coastal New Zealand. After group workshops, experts provided more consistent ranking of risks and more consistent best estimates of impact through increased clarity in terminology and dampening of extreme positions, yet probability distributions for impacts widened. The results from this case study suggest that group elicitations have favorable consequences for the quality and uncertainty of risk judgments within and across experts, making group elicitation techniques invaluable tools in contexts of limited data.
DOI: 10.5683/sp2/hw6lnh
title: Data from: Grow with the flow: a latitudinal cline in physiology is associated with more variable precipitation in Erythranthe cardinalis

description: AbstractLocal adaptation is commonly observed in nature: organisms perform well in their natal environment, but poorly outside it. Correlations between traits and latitude, or latitudinal clines, are among the most common pieces of evidence for local adaptation, but identifying the traits under selection and the selective agents is challenging. Here, we investigated a latitudinal cline in growth and photosynthesis across 16 populations of the perennial herb Erythranthe cardinalis (Phrymaceae). Using machine learning methods, we identify interannual variation in precipitation as a likely selective agent: southern populations from more variable environments had higher photosynthetic rates and grew faster. We hypothesize that selection may favour a more annualized life history – grow now rather than save for next year – in environments where severe droughts occur more often. Thus, our study provides insight into how species may adapt if Mediterranean climates become more variable due to climate change.
DOI: 10.5683/sp2/9aefkd
title: Data from: Growth gains from selective breeding in a spruce hybrid zone do not compromise local adaptation to climate

description: AbstractHybrid zones contain extensive standing genetic variation that facilitates rapid responses to selection. The Picea glauca x P. engelmannii hybrid zone in western Canada is the focus of tree breeding programs that annually produce ~90 million reforestation seedlings. Understanding the direct and indirect effects of selective breeding on adaptive variation is necessary to implement assisted gene flow polices in Alberta and British Columbia that match these seedlings with future climates. We decomposed relationships among hybrid ancestry, adaptive traits and climate to understand the implications of selective breeding for climate adaptations and assisted gene flow strategies. The effects of selection on associations among hybrid index estimated from ~6500 SNPs, adaptive traits, and provenance climates were assessed for ~2400 common garden seedlings. Hybrid index differences between natural and selected seedlings within breeding zones were small in Alberta (average +2%), but larger and more variable in BC (average -7 %, range -24% to +1%), slightly favoring P. glauca ancestry. The average height growth gain of selected seedlings over natural seedlings within breeding zones was 36% (range 12% to 86%). Clines in growth with temperature-related variables were strong, but differed little between selected and natural populations. Seedling hybrid index and growth trait associations with evapotranspiration-related climate variables were stronger in selected than in natural seedlings, indicating possible pre-adaptation to drier future climates. Associations among cold hardiness, hybrid ancestry and cold-related climate variables dominated signals of local adaptation that were preserved in breeding populations. Strong hybrid ancestry-phenotype-climate associations suggest that assisted gene flow will be necessary to match interior spruce breeding populations with shifting future climates. The absence of antagonistic selection responses among traits and maintenance of cold adaptation in selected seedlings suggests breeding populations can be safely redeployed using assisted gene flow prescriptions similar to those of natural populations.
DOI: 10.5683/sp2/nk8gdf
title: Data from: Habitat preference facilitates successful early breeding in an open-cup nesting songbird

description: AbstractSelecting breeding habitats that ameliorate environmental limits on fitness and facilitate successful reproduction should benefit individual animals. This is particularly true in the temperate zone, where breeding early in a season presents a unique series of environmental challenges that can limit an individual's fitness. While many studies document links between habitat quality and reproductive success, few identify the cues used to assess habitat quality or the components of reproduction most influenced by occupying higher quality habitat, particularly during the early breeding season. We used detailed spatial maps and observations of all early season nesting attempts in an insular song sparrow (Melospiza melodia) population over 38 years to estimate the influence of nest-site preference on reproductive success and to test whether relative microclimate or food availability may act as cues for early season site selection. Female sparrows in preferred early season nest sites had earlier laying dates, exhibited more energetically efficient incubation behaviour and produced more offspring that recruited to the population than those nesting in less-preferred sites. Preference for potential nesting sites was positively related to leaf damage by Lepidopteran larvae, an indicator of food abundance, negatively related to early season microclimate, likely due to greater vegetation cover, and unrelated to site-specific plant phenology. Our findings show that breeding in preferred, high-quality habitat may offer females a fitness advantage by facilitating early laying and the production of offspring more likely to recruit to the population at a lower potential reproductive cost to the parent. We provide a clear demonstration of potential links between habitat preference and quality and their contributions to the ecology and life history of animals in seasonal environments.
DOI: 10.5683/sp2/yhvvbt
title: Data from: Habitat size thresholds for predators: why damselflies only occur in large bromeliads

description: AbstractPredators are often more sensitive to habitat size than their prey, and frequently occur in only the largest habitats. Four explanations have been proposed for this pattern: (1) small habitats do not have enough energy to support higher trophic levels; (2) small habitats are less likely to contain particular prey required by specialist predators; (3) small habitats are risky for predators with slow life histories or large body sizes; (4) small habitats are numerically unlikely to be colonized by regionally rare species, such as predators. We critically examine these four hypotheses in relation to the predatory damselfly larva, Mecistogaster modesta Selys. (Pseudostigmatidae), which occurs almost exclusively in bromeliads &gt; 100ml in capacity. We synthesize multiple years of survey data and three manipulative experiments from the Área de Conservación Guanacaste, Costa Rica to conclude that damselflies do not occur in small bromeliads due to their higher risk of desiccation – not because of energetic limitation, trophic specialization, risk of terrestrial predation, or pure numerical effects. These results suggest that recent and predicted declines in precipitation in northwestern Costa Rica may further restrict bromeliad occupancy by damselflies, with cascading consequences for the rest of the aquatic food web.
DOI: 10.5683/sp2/otx1ca
title: Data from: Habitat-mediated effects of diurnal and seasonal migration strategies on juvenile salmon survival

description: AbstractBehavioral decisions during periods of vulnerability to predation risk, such as migrations during the juvenile life-history stage, may strongly affect the probability of survival. Habitats through which animals migrate are heterogeneous, and risk-reducing behaviors may be more important in some habitats than others. Using biotelemetry data, diurnal and seasonal riverine migration patterns of &gt;3800 juvenile salmon across four species, 12 watersheds, and five years were quantified to evaluate possible effects of migration timing on survival from lower river reaches to coastal waters. In small, clear rivers most salmon avoided migrating during daylight hours, and average survival of fish migrating at night (55%; 95% confidence limits 50–61%) was twice that of fish migrating in daylight (24%; CL 17-31%). Conversely, in the large, heavily silted Fraser River neither preference for nocturnal travel nor effects of diurnal timing on survival were observed. Early ocean survival was also influenced by the timing of ocean entry, but in opposite directions for fish from the Fraser River and smaller rivers. In the Fraser River, average survival for later migrants (69%; CL 60–77%) was nearly twice that of earlier migrants (38%; CL 33–44%), likely related to seasonal increases in river flow. In contrast, in smaller rivers, average survival for earlier migrants (70%; CL 65–74%) was 3-fold greater than survival for later migrants (19%; 95% CL 14–25%). Together these results demonstrate that timing decisions affecting survival of juvenile salmon during their migration are likely mediated by landscape characteristics that plausibly influence the risk of predation.
DOI: 10.5683/sp2/ofslnc
title: Data from: Haploids adapt faster than diploids across a range of environments

description: AbstractDespite a great deal of theoretical attention, we have limited empirical data about how ploidy influences the rate of adaptation. We evolved isogenic haploid and diploid populations of Saccharomyces cerevisiae for 200 generations in seven different environments. We measured the competitive fitness of all ancestral and evolved lines against a common competitor and find that in all seven environments haploid lines adapted faster than diploids, significantly so in three environments. We apply theory that relates the rates of adaptation and measured effective population sizes to the properties of beneficial mutations. We obtained rough estimates of the average selection coefficients in haploids between 2-10% for these first selected mutations. Results were consistent with semi-dominant to dominant mutations in four environments and recessive to additive mutations in two other environments. These results are consistent with theory that predicts haploids should evolve faster than diploids at large population sizes.
DOI: 10.5683/sp2/6ufl4n
title: Data from: Herbarium specimens reveal increasing herbivory over the past century

description: AbstractPredicting how ecological interactions will respond to global change is a major challenge. Plants and their associated insect herbivores compose much of macroscopic diversity, yet how their interactions have been altered by recent environmental change remains underexplored. To address this gap, we quantified herbivory on herbarium specimens of four plant species with records extending back 112 years. Our study focused on the northeastern US, where temperatures have increased rapidly over the last few decades. This region also represents a range of urban development, a form of global change that has shown variable effects on herbivores in the past studies. Herbarium specimens collected in the early 2000s were 23% more likely to be damaged by herbivores than those collected in the early 1900s. Herbivory was greater following warmer winters and at low latitudes, suggesting that climate warming may drive increasing insect damage over time. In contrast, human population densities were negatively associated with herbivore damage. To explore whether changes in insect occurrence or abundance might explain shifts in herbivory, we used insect observational records to build climate occupancy models for lepidopteran herbivores (butterflies and moths) of our focal plant species. These models show that higher winter temperatures were associated with higher probability of insect herbivore presence, while urbanization was associated with reduced probability of herbivore presence, supporting a link between insect herbivore occurrence and herbivory mediated through environment. Synthesis. Using a temporal record of plant herbivory that spans over a century, we show that both temperature and urbanization influence insect damage to plants, but in very different ways. Our results indicate that damage to plants by insect herbivores will likely continue to increase through time in the northeastern US as global temperatures rise, but that urbanization may disrupt local effects of winter warming on herbivory by excluding certain herbivores. These changes may scale to shape ecosystem processes that are driven by herbivory, including plant productivity.