cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jjgblq
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sarcopterygii",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-82.265625 11.695272,-82.265625 -23.402764,-43.59375 -23.402764,-43.59375 11.695272,-82.265625 11.695272))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 70 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012973-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-02.1952645/2362940
title: Data for EMSL Project 50076 from February 2020
DOI: 10.15468/dl.hkvg6t
title: Occurrence Download

description: A dataset containing 8832 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Material citation, Living Specimen, Occurrence evidence)",
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus nigra L."
 ]
}

 The dataset includes 8832 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019097-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.auqrni
title: Occurrence Download

description: A dataset containing 595 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asio stygius (Wagler, 1832)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 595 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012973-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-02.1946580/2362941
title: Data for EMSL Project 50076 from February 2020
DOI: 10.15468/dl.74svap
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyphostemma lynesii (Dewit) Desc. ex Wild & R.B.Drumm."
 ]
}

 The dataset includes 31 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015612-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rgzkmq
title: Occurrence Download

description: A dataset containing 422401 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Country is Madagascar"
 ]
}

 The dataset includes 422401 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001244-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5bqme
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Prosopis tamaulipana"
 ]
}

 The dataset includes 46 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007972-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4r5k36
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bromus carinatus",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007973-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgcp8j
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Misumessus lappi"
 ]
}

 The dataset includes 67 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007971-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gajf2f
title: Occurrence Download

description: A dataset containing 56442 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Turdus migratorius)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 56442 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007914-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6pdnx8
title: Occurrence Download

description: A dataset containing 388 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bromus carinatus",
 "Country is Germany",
 "HasCoordinate is true"
 ]
}

 The dataset includes 388 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007974-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17137001
title: tidyexposomics Data Bundle

description: This bundle contains curated datasets used in the vignettes and ontology annotation workflows of the tidyexposomics Bioconductor package. The data are derived from the ISGlobal Exposome Data Challenge 2021 (Maitre et al., Environment International, 2022; DOI: 10.1016/j.envint.2022.107422). The original challenge datasets are available on Figshare, Project 98813 (licensed under CC-BY 4.0) and on GitHub (isglobal-exposomeHub/ExposomeDataChallenge2021). Please cite the original study and data creators when using this bundle.

This Zenodo record provides a processed version of the challenge data to support reproducibility of examples within tidyexposomics. It is not a replacement for the full dataset and users requiring complete data should consult the original repositories.

Contents



omics_list.zip: multi-omics matrices (gene expression, DNA methylation, metabolomics).

fdata.zip: feature-level metadata corresponding to each omic dataset.

meta.zip: sample-level metadata.

annotated_cb.zip: annotated codebook for exposure variables.

expom_1.zip: pre-built example of an exposomicset.

chebi.zip: snapshot of the Chemical Entities of Biological Interest (ChEBI) ontology (retrieved 2025-06-19).

ecto.zip: snapshot of the Environmental Conditions, Treatments, and Exposures (ECTO) ontology (retrieved 2025-06-19).

hpo.zip: snapshot of the Human Phenotype Ontology (HPO) (retrieved 2025-06-19).


Citation

If you use this data bundle, please cite both:



The original ISGlobal Exposome Data Challenge paper (Maitre et al., 2022, Env. Int. DOI: 10.1016/j.envint.2022.107422).

This Zenodo record (DOI provided by Zenodo).
DOI: 10.15468/dl.g8uh4z
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bromus carinatus",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007975-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9m69df
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Bauhinia longipedicellata"
 ]
}

 The dataset includes 136 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007977-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e193588v3-188132
title: Relationship Between Smartphone Usage and Sleep Quality & Mental Health of College Students During the COVID-19 Pandemic

description: The study explored the impact of smartphone usage patterns on sleep quality and mental health among 508 college students during the COVID-19 pandemic via PSQI. Findings showed no gender difference in sleep disorders. Activities like watching videos, gaming, and studying on phones were linked to higher sleep disturbances. Usage exceeding 30 minutes weekly and frequency over 4 times a week showed significant sleep issues. Activities like music, chatting, and social interactions had minimal sleep impact. The research emphasizes the need for strategies promoting healthy phone use and awareness of its effects on sleep and mental health.
DOI: 10.5517/ccdc.csd.cc2nbxgd
title: CCDC 2453354: Experimental Crystal Structure Determination

description: Related Article: Jianli Shi, Bo Yan, Guojiao Wang, Bingqiang Wang, Haiying Yang, Yunlong Fu, Wenjuan Ji|2025|Inorg.Chem.|64|17266|doi:10.1021/acs.inorgchem.5c02403
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.gj7ha3
title: Occurrence Download

description: A dataset containing 2149 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección de Vertebrados Estación Científica Charles Darwin"
 ]
}

 The dataset includes 2149 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007981-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vxmqt6
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tejidos de especimenes colectados en la ventana de biodiversidad Río Guamués, corregimiento El Encano, Municipio de Pasto, Nariño, Colombia"
 ]
}

 The dataset includes 213 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007979-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9uh5uk
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bucardium ringens",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 35 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007978-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.397ukq
title: Occurrence Download

description: A dataset containing 42469 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Year is 2004",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 42469 records from 224 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007982-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nr3d3q
title: Occurrence Download

description: A dataset containing 753 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Caracterización biológica de la ventana de biodiversidad Río Guamués, corregimiento El Encano, Municipio de Pasto, Nariño, Colombia"
 ]
}

 The dataset includes 753 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007983-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p1ybqzff
title: Magnetic susceptibility and gamma ray spectrometry measurements in southwestern Montana, 2025

description: This dataset includes rock magnetic susceptibility and gamma ray spectrometry measurements from 204 outcrops in southwest Montana during 2025. The measurements were collected to understand the causative sources of airborne magnetic and radiometric survey anomalies in the Idaho-Montana porphyry belt. Sixteen magnetic susceptibility measurements were collected at each analyzed site using a ZH Instruments SM30 susceptibility meter. Gamma ray measurements were collected using a Radiation Solutions RS-230 BGO Super-SPEC Handheld Gamma-Ray Spectrometer. Geologic units were assigned from 1:100,000 scale digital geologic maps noted in the supplemental information section of the metadata file.
DOI: 10.15468/dl.w3vr2w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bromus carinatus",
 "Country is Lithuania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007985-250914085247600/datasets/export for details.
DOI: 10.15468/dl.aqcnnd
title: Occurrence Download

description: A dataset containing 185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bromus carinatus",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 185 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007984-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wt5psq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Acer saccharum"
 ]
 },
 "HasCoordinate is TRUE",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2024",
 "DecimalLatitude is greater than or equal to -15.435081244318416",
 "DecimalLatitude is less than or equal to 11.808977498598198",
 "DecimalLongitude is greater than or equal to -24.599895315093026",
 "DecimalLongitude is less than or equal to 10.70463377662285",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007986-250914085247600/datasets/export for details.
DOI: 10.15468/dl.papqrh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Turdus migratorius)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007987-250914085247600/datasets/export for details.
DOI: 10.6084/m9.figshare.30141616
title: weevil video

description: weevil data
DOI: 10.6084/m9.figshare.30141616.v1
title: weevil video

description: weevil data
DOI: 10.15468/dl.rexvxa
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxonomic revaluation of the Ahaetulla prasina (H. Boie in F. Boie, 1827) complex from Northeast India: resurrection and redescription of Ahaetulla flavescens (Wall, 1910) (Reptilia: Serpentes: Colubridae)"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007988-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.webp5b
title: Occurrence Download

description: A dataset containing 1003 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bromus carinatus",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1003 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007989-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.288hya
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Misumessus lappi"
 ]
}

 The dataset includes 67 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007990-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.esyf5x
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cardium costatum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 20 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007992-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t6bntm
title: Occurrence Download

description: A dataset containing 665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (USA.5_1, USA.48_1, USA.38_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arabidopsis thaliana"
 ]
}

 The dataset includes 665 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007991-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xxxnq
title: Occurrence Download

description: A dataset containing 218 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudognaphalium chartaceum"
 ]
}

 The dataset includes 218 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007995-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9dn6p
title: Occurrence Download

description: A dataset containing 43004 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Year is 2005",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 43004 records from 230 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007993-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6p78d9
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bromus carinatus",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007994-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5e6zr4
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bromus carinatus",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007996-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15139/s3/n3ltdz
title: Calprotectin paper

description: These are the figures and text for the PNAS resubmission
DOI: 10.15468/dl.4whkhv
title: Occurrence Download

description: A dataset containing 5446 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Coccinellidae"
 ]
}

 The dataset includes 5446 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007997-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vtnqm7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bromus carinatus",
 "Country is Slovenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007999-250914085247600/datasets/export for details.