cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2j1sv7
title: CCDC 2325429: Experimental Crystal Structure Determination

description: Related Article: Lu Fu, Wenyue Tian, Meng-Yu Bao, Zhiyan Liu, Wen-Jing Ren, Jiazheng Liu, Wei Zhang, Zhifeng Zhang, Jin Gao, Li-Ping Bai, Zhi-Hong Jiang, Guo-Yuan Zhu|2024|Phytochemistry|220|114018|doi:10.1016/j.phytochem.2024.114018
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.10458188.v1
title: MOESM2 of Population-level analysis reveals the widespread occurrence and phenotypic consequence of DNA methylation variation not tagged by genetic variation in maize

description: Additional file 2: Table S1. Summary of data generated in this study. Table S2. DMRs with significant SNPs. Table S3. Associations between DMR and gene expression in kernel and leaf. Table S4. Associations between DMRs and metabolic traits.
DOI: 10.6084/m9.figshare.25315705
title: teaseq_corrected.h5mu

description: Panpipes input for clustering for the multimodal integration tutorial of rna, prot and atac.
DOI: 10.6084/m9.figshare.25315705.v1
title: teaseq_corrected.h5mu

description: Panpipes input for clustering for the multimodal integration tutorial of rna, prot and atac.
DOI: 10.6084/m9.figshare.17798097.v1
title: Additional file 10 of GM-CSF impairs erythropoiesis by disrupting erythroblastic island formation via macrophages

description: Additional file 10: Table S2. Preparation of EBI enrichment buffer with different concentrations.
DOI: 10.6084/m9.figshare.10458206
title: Additional file 1 of Systematic profiling of alternative splicing signature reveals prognostic predictor for cervical cancer

description: Additional file 1: Table S1. Alternative splicing events in 253 cancer samples.
DOI: 10.6084/m9.figshare.10458206.v2
title: Additional file 1 of Systematic profiling of alternative splicing signature reveals prognostic predictor for cervical cancer

description: Additional file 1: Table S1. Alternative splicing events in 253 cancer samples.
DOI: 10.6084/m9.figshare.10458206.v1
title: MOESM1 of Systematic profiling of alternative splicing signature reveals prognostic predictor for cervical cancer

description: Additional file 1: Table S1. Alternative splicing events in 253 cancer samples.
DOI: 10.6084/m9.figshare.24089699
title: Specific KIR-HLA genotypes predict outcomes in refractory or relapsed primary central nervous system lymphoma

description: An effective salvage regimen for the reinduction of remission is lacking for refractory or relapsed primary central nervous system lymphoma (r/r PCNSL). This study aimed to evaluate the efficacy and safety of cytarabine plus temozolomide in treating r/r PCNSL and to explore the associated prognostic factors. A single-center retrospective cohort study was conducted to assess the efficacy and safety of cytarabine and temozolomide (AT) in r/r PCNSL patients. KIR and HLA genotyping was performed on peripheral blood samples. Thirty PCNSL patients receiving an AT regimen (cytarabine 3 g/m<sup>2</sup> for 2 days combined with temozolomide 150 mg/m<sup>2</sup> for 5 days) in our institution were analyzed. The median age was 65 years (range 25–79 years). A total of 43.4% of patients (13/30) achieved an overall response within a median follow-up of 16 months (95% confidence interval [CI]: 11–23 months). The median PFS and OS of the cohort were 1.5 months (95% CI: 1–4 months) and 19.5 months (95% CI: 11 months to not calculable), respectively. Patients harboring KIR3DL1/HLA-B genotypes predicting low affinity had a higher response rate (<i>p</i> = 0.042) and longer median PFS (3 months) than those with KIR3DL1/HLA-B genotypes predicting high affinity (1 month) (<i>p</i> = 0.0047). Cox regression analysis indicated that KIR/HLA-B genotypes were independently associated with PFS (<i>p</i> = 0.043). However, KIR/HLA-B genotypes had no impact on the OS of the cohort. The toxicity of AT treatment was mild and manageable. The AT regimen was well tolerated, and patients with specific KIR-HLA genotypes may benefit from this regimen.
DOI: 10.6084/m9.figshare.24089699.v1
title: Specific KIR-HLA genotypes predict outcomes in refractory or relapsed primary central nervous system lymphoma

description: An effective salvage regimen for the reinduction of remission is lacking for refractory or relapsed primary central nervous system lymphoma (r/r PCNSL). This study aimed to evaluate the efficacy and safety of cytarabine plus temozolomide in treating r/r PCNSL and to explore the associated prognostic factors. A single-center retrospective cohort study was conducted to assess the efficacy and safety of cytarabine and temozolomide (AT) in r/r PCNSL patients. KIR and HLA genotyping was performed on peripheral blood samples. Thirty PCNSL patients receiving an AT regimen (cytarabine 3 g/m<sup>2</sup> for 2 days combined with temozolomide 150 mg/m<sup>2</sup> for 5 days) in our institution were analyzed. The median age was 65 years (range 25–79 years). A total of 43.4% of patients (13/30) achieved an overall response within a median follow-up of 16 months (95% confidence interval [CI]: 11–23 months). The median PFS and OS of the cohort were 1.5 months (95% CI: 1–4 months) and 19.5 months (95% CI: 11 months to not calculable), respectively. Patients harboring KIR3DL1/HLA-B genotypes predicting low affinity had a higher response rate (<i>p</i> = 0.042) and longer median PFS (3 months) than those with KIR3DL1/HLA-B genotypes predicting high affinity (1 month) (<i>p</i> = 0.0047). Cox regression analysis indicated that KIR/HLA-B genotypes were independently associated with PFS (<i>p</i> = 0.043). However, KIR/HLA-B genotypes had no impact on the OS of the cohort. The toxicity of AT treatment was mild and manageable. The AT regimen was well tolerated, and patients with specific KIR-HLA genotypes may benefit from this regimen.
DOI: 10.6084/m9.figshare.24089705
title: Neutralization against Omicron subvariants after BA.5/BF.7 breakthrough infection weakened as virus evolution and aging despite repeated prototype-based vaccination<sup>1</sup>

description: Background: Omicron had swept the mainland China between December 2022 and January 2023, while SARS-CoV-2 still continued to evolve. To fully prepare for the next wave, it’s urgent to evaluate the humoral immune response post BA.5/BF.7 breakthrough infection against predominant sub-lineages among existing vaccination strategies and the elders. Method: This study enrolled a longitudinal young-adult cohort from 2/3-dose vaccination to 1 month after breakthrough infection, and an elder cohort at 1 month after breakthrough infection. Seral samples were collected and tested for humoral immune response to SARS-CoV-2 subvariants including WT, BA.2, BA.5, BF.7, BQ.1.1, CH.1.1, XBB.1.5. Results: BA.5/BF.7 breakthrough infection induced higher neutralization activity than solely vaccination in all SARS-CoV-2 strains, while the latest Omicron subvariants, BQ.1.1, CH.1.1, XBB.1.5, exhibited the strongest neutralization evasion ability. There was a negative correlation between age and humoral immune response in WT, BA.5, BQ.1.1, and XBB.1.5. Compared to non-vaccination groups, breakthrough infection in two-dose vaccination groups had significantly higher neutralizing antibody against WT, BA.2, BA.5, BF.7 but not to BQ.1.1, CH.1.1, XBB.1.5 while booster dose against the prototype prior-breakthrough would not further significantly enhance individual’s humoral responses against the latest Omicron subvariants. Conclusions: Newer variants manifest increasing immune evasion from neutralization and repeated prototype-based booster vaccines may not further enhance neutralizing antibody against emerging new variants. Older adults have lower levels of neutralizing antibody. Future vaccination strategies should aim to enhance effective neutralization to contemporary variants.
DOI: 10.6084/m9.figshare.24089705.v2
title: Neutralization against Omicron subvariants after BA.5/BF.7 breakthrough infection weakened as virus evolution and aging despite repeated prototype-based vaccination<sup>1</sup>

description: Background: Omicron had swept the mainland China between December 2022 and January 2023, while SARS-CoV-2 still continued to evolve. To fully prepare for the next wave, it’s urgent to evaluate the humoral immune response post BA.5/BF.7 breakthrough infection against predominant sub-lineages among existing vaccination strategies and the elders. Method: This study enrolled a longitudinal young-adult cohort from 2/3-dose vaccination to 1 month after breakthrough infection, and an elder cohort at 1 month after breakthrough infection. Seral samples were collected and tested for humoral immune response to SARS-CoV-2 subvariants including WT, BA.2, BA.5, BF.7, BQ.1.1, CH.1.1, XBB.1.5. Results: BA.5/BF.7 breakthrough infection induced higher neutralization activity than solely vaccination in all SARS-CoV-2 strains, while the latest Omicron subvariants, BQ.1.1, CH.1.1, XBB.1.5, exhibited the strongest neutralization evasion ability. There was a negative correlation between age and humoral immune response in WT, BA.5, BQ.1.1, and XBB.1.5. Compared to non-vaccination groups, breakthrough infection in two-dose vaccination groups had significantly higher neutralizing antibody against WT, BA.2, BA.5, BF.7 but not to BQ.1.1, CH.1.1, XBB.1.5 while booster dose against the prototype prior-breakthrough would not further significantly enhance individual’s humoral responses against the latest Omicron subvariants. Conclusions: Newer variants manifest increasing immune evasion from neutralization and repeated prototype-based booster vaccines may not further enhance neutralizing antibody against emerging new variants. Older adults have lower levels of neutralizing antibody. Future vaccination strategies should aim to enhance effective neutralization to contemporary variants.
DOI: 10.6084/m9.figshare.10458221
title: Additional file 2 of Systematic profiling of alternative splicing signature reveals prognostic predictor for cervical cancer

description: Additional file 2: Table S2. Integrated clinical follow-up data of cervical cancer patients.
DOI: 10.6084/m9.figshare.25324801
title: Supplementary Material for: Bladder Paraganglioma Presenting as post-Micturition Palpitations: A case report

description: Introduction: paraganglioma of the urinary bladder (PUB) is an extremely rare extra-adrenal catecholamine-secreting neuroendocrine tumor, accounting for only 0.05% of all bladder tumors and 1% of all pheochromocytomas. The clinical presentation of PUB can be diverse and challenging to diagnose. Case Presentation: This case report presents a 37-year-old man with post-micturition palpitation, headache, and sweating, with no history of hematuria or other irritative urinary symptoms. Ultrasound and contrast-enhanced computed tomography (CECT) revealed a suspicious mass in the right posterolateral wall of the urinary bladder. Despite normal functional hormonal tests, the diagnosis of PUB was confirmed after surgical enucleation and histopathological examination. 
Conclusion: This report emphasizes the importance of considering PUB as a differential diagnosis in patients with post-micturition symptoms and paroxysmal hypertension, as well as the need for a multidisciplinary approach in the evaluation and management of such rare and complex cases. Early recognition and surgical intervention are crucial for optimal management and favorable clinical outcomes.
DOI: 10.6084/m9.figshare.25324801.v1
title: Supplementary Material for: Bladder Paraganglioma Presenting as post-Micturition Palpitations: A case report

description: Introduction: paraganglioma of the urinary bladder (PUB) is an extremely rare extra-adrenal catecholamine-secreting neuroendocrine tumor, accounting for only 0.05% of all bladder tumors and 1% of all pheochromocytomas. The clinical presentation of PUB can be diverse and challenging to diagnose. Case Presentation: This case report presents a 37-year-old man with post-micturition palpitation, headache, and sweating, with no history of hematuria or other irritative urinary symptoms. Ultrasound and contrast-enhanced computed tomography (CECT) revealed a suspicious mass in the right posterolateral wall of the urinary bladder. Despite normal functional hormonal tests, the diagnosis of PUB was confirmed after surgical enucleation and histopathological examination. 
Conclusion: This report emphasizes the importance of considering PUB as a differential diagnosis in patients with post-micturition symptoms and paroxysmal hypertension, as well as the need for a multidisciplinary approach in the evaluation and management of such rare and complex cases. Early recognition and surgical intervention are crucial for optimal management and favorable clinical outcomes.
DOI: 10.6084/m9.figshare.10458221.v2
title: Additional file 2 of Systematic profiling of alternative splicing signature reveals prognostic predictor for cervical cancer

description: Additional file 2: Table S2. Integrated clinical follow-up data of cervical cancer patients.
DOI: 10.6084/m9.figshare.10458221.v1
title: MOESM2 of Systematic profiling of alternative splicing signature reveals prognostic predictor for cervical cancer

description: Additional file 2: Table S2. Integrated clinical follow-up data of cervical cancer patients.
DOI: 10.6084/m9.figshare.17798258
title: Additional file 10 of Assessing reproducibility of inherited variants detected with short-read whole genome sequencing

description: Additional file 10: Table S9. Factor contribution analysis by boosted tree.
DOI: 10.6084/m9.figshare.17798258.v1
title: Additional file 10 of Assessing reproducibility of inherited variants detected with short-read whole genome sequencing

description: Additional file 10: Table S9. Factor contribution analysis by boosted tree.
DOI: 10.6084/m9.figshare.11506803
title: Geographically neural network weighted regression for the accurate estimation of spatial non-stationarity

description: Geographically weighted regression (GWR) is a classic and widely used approach to model spatial non-stationarity. However, the approach makes no precise expressions of its weighting kernels and is insufficient to estimate complex geographical processes. To resolve these problems, we proposed a geographically neural network weighted regression (GNNWR) model that combines ordinary least squares (OLS) and neural networks to estimate spatial non-stationarity based on a concept similar to GWR. Specifically, we designed a spatially weighted neural network (SWNN) to represent the nonstationary weight matrix in GNNWR and developed two case studies to examine the effectiveness of GNNWR. The first case used simulated datasets, and the second case, environmental observations from the coastal areas of Zhejiang. The results showed that GNNWR achieved better fitting accuracy and more adequate prediction than OLS and GWR. In addition, GNNWR is applicable to addressing spatial non-stationarity in various domains with complex geographical processes.
DOI: 10.6084/m9.figshare.10458230
title: Additional file 3 of Systematic profiling of alternative splicing signature reveals prognostic predictor for cervical cancer

description: Additional file 3: Table S3. Prognosis-related alternative splicing events of cervical cancer.
DOI: 10.6084/m9.figshare.10458230.v2
title: Additional file 3 of Systematic profiling of alternative splicing signature reveals prognostic predictor for cervical cancer

description: Additional file 3: Table S3. Prognosis-related alternative splicing events of cervical cancer.
DOI: 10.6084/m9.figshare.17798103
title: Additional file 11 of GM-CSF impairs erythropoiesis by disrupting erythroblastic island formation via macrophages

description: Additional file 11: Table S3. The list of primers used in this study.
DOI: 10.6084/m9.figshare.10458230.v1
title: MOESM3 of Systematic profiling of alternative splicing signature reveals prognostic predictor for cervical cancer

description: Additional file 3: Table S3. Prognosis-related alternative splicing events of cervical cancer.
DOI: 10.48597/p7sb-pk67
title: Aerosol_optical_depth at Ryori

description: Measurement of Aerosol_optical_depth at Ryori
DOI: 10.48597/pjek-g679
title: Inorganics in air and particle phase at Kosetice (NOAK)

description: Measurement of Inorganics in air and particle phase at Kosetice (NOAK)
DOI: 10.48597/qk5m-78mh
title: PAHs (polycyclic aromatic hydrocarbons) at Agia Marina Xyliatou / Cyprus Atmospheric Observatory

description: Measurement of PAHs (polycyclic aromatic hydrocarbons) at Agia Marina Xyliatou / Cyprus Atmospheric Observatory
DOI: 10.48597/qn38-8gxm
title: POPs (persistent organic pollutants) at Schmücke

description: Measurement of POPs (persistent organic pollutants) at Schmücke
DOI: 10.48597/reds-nf9k
title: PAHs (polycyclic aromatic hydrocarbons, 16) at Pallas (Matorova)

description: Measurement of PAHs (polycyclic aromatic hydrocarbons, 16) at Pallas (Matorova)
DOI: 10.48597/sb2k-frd7
title: POPs (persistent organic pollutants) at Waldhof

description: Measurement of POPs (persistent organic pollutants) at Waldhof
DOI: 10.48597/sqan-yca3
title: Calcium at Leova II

description: Measurement of Calcium at Leova II
DOI: 10.6084/m9.figshare.17798264
title: Additional file 11 of Assessing reproducibility of inherited variants detected with short-read whole genome sequencing

description: Additional file 11: Table S10. Factor contribution analysis by variance component analysis.
DOI: 10.48597/sspz-2m7f
title: Inorganics in air and particle phase at Agia Marina Xyliatou / Cyprus Atmospheric Observatory

description: Measurement of Inorganics in air and particle phase at Agia Marina Xyliatou / Cyprus Atmospheric Observatory
DOI: 10.48597/t7w2-wg6h
title: Aerosol_absorption_coefficient at Neumayer

description: Measurement of Aerosol_absorption_coefficient at Neumayer
DOI: 10.48597/tj2q-v7ma
title: Particle_number_size_distribution at Zugspitze-Schneefernerhaus

description: Measurement of Particle_number_size_distribution at Zugspitze-Schneefernerhaus
DOI: 10.48597/tqh2-8tqh
title: Heavy metals at Schauinsland

description: Measurement of Heavy metals at Schauinsland
DOI: 10.48597/tvsx-jqmw
title: Aerosol light scattering at Bukit Kototabang

description: Measurement of Aerosol light scattering at Bukit Kototabang
DOI: 10.48597/uhrq-hphx
title: Aerosol_light_scattering_coefficient at Finokalia

description: Measurement of Aerosol_light_scattering_coefficient at Finokalia
DOI: 10.48597/usj5-h4sa
title: Nitrogen oxides at Lahemaa

description: Measurement of Nitrogen oxides at Lahemaa
DOI: 10.6084/m9.figshare.17798265
title: Additional file 1 of Gene expression programs during callus development in tissue culture of two Eucalyptus species

description: Additional file 1.
DOI: 10.48597/uwd6-m5cd
title: PAHs (polycyclic aromatic hydrocarbons) at Westerland

description: Measurement of PAHs (polycyclic aromatic hydrocarbons) at Westerland
DOI: 10.48597/vpua-6te8
title: Aerosol light scattering at El Tololo

description: Measurement of Aerosol light scattering at El Tololo
DOI: 10.48597/vtse-ytu6
title: Heavy metals at Schmücke

description: Measurement of Heavy metals at Schmücke
DOI: 10.6084/m9.figshare.17798265.v1
title: Additional file 1 of Gene expression programs during callus development in tissue culture of two Eucalyptus species

description: Additional file 1.
DOI: 10.48597/vuqg-yqqy
title: Aerosol_optical_depth at Valentia Observatory

description: Measurement of Aerosol_optical_depth at Valentia Observatory
DOI: 10.48597/vvzy-fh66
title: Inorganics in precipitation at Brotjacklriegel

description: Measurement of Inorganics in precipitation at Brotjacklriegel
DOI: 10.48597/vz8g-zjc6
title: Nitrogen oxides at Ispra

description: Measurement of Nitrogen oxides at Ispra
DOI: 10.48597/wtdu-6cgj
title: PAHs (polycyclic aromatic hydrocarbons) at Waldhof

description: Measurement of PAHs (polycyclic aromatic hydrocarbons) at Waldhof
DOI: 10.48597/wtzq-wh9s
title: POPs (persistent organic pollutants) at Westerland

description: Measurement of POPs (persistent organic pollutants) at Westerland
DOI: 10.48597/wvr3-xnyw
title: PAHs (polycyclic aromatic hydrocarbons, 16) at Virolahti II

description: Measurement of PAHs (polycyclic aromatic hydrocarbons, 16) at Virolahti II
DOI: 10.48597/x947-9vea
title: Cadmium at Lahemaa

description: Measurement of Cadmium at Lahemaa
DOI: 10.15468/dl.9rtijj
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "HasCoordinate is true",
 "TaxonKey is Plectrohyla guatemalensis Brocchi, 1877",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 49 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002858-170925132151566/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ba6zaa
title: Occurrence Download

description: A dataset containing 375 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Achlyodes thraso (Hübner, 1807)"
 ]
}

 The dataset includes 375 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034617-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.drd4pc
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Equinodermos del atolón Albuquerque durante la Expedición Seaflower 2018 - Proyecto Colombia BIO"
 ]
}

 The dataset includes 146 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046633-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3wdis
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abronia smithi Campbell & Frost, 1993"
 ]
}

 The dataset includes 36 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002858-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hdhfcw
title: Occurrence Download

description: A dataset containing 80134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Prunus domestica L."
 ]
}

 The dataset includes 80134 records from 693 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0413946-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g4qtpz
title: Occurrence Download

description: A dataset containing 1183809 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 1183809 records from 1638 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030592-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.