cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2jyz3l
title: CCDC 2352500: Experimental Crystal Structure Determination

description: Related Article: Pascal G. Yot|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jz05q
title: CCDC 2352533: Experimental Crystal Structure Determination

description: Related Article: Ekaterina E. Khramtsova|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.ggy2re
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oides bowringii (Baly) Baly"
 ]
}

 The dataset includes 113 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063116-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d9993g
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Tateurndina ocellicauda Nichols, 1955"
 ]
}

 The dataset includes 14 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063117-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ca8q82
title: Occurrence Download

description: A dataset containing 12840 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Passiflora edulis Sims"
 ]
}

 The dataset includes 12840 records from 441 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063115-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xnsxb6
title: Occurrence Download

description: A dataset containing 479 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Passiflora edulis Sims"
 ]
}

 The dataset includes 479 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063119-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y7ae86
title: Occurrence Download

description: A dataset containing 4309 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gopherus berlandieri Agassiz, 1857"
 ]
}

 The dataset includes 4309 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063120-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24866523
title: <i>Bombus </i>Species - Temperature.xlsx

description: Species - TemperatureDatasheet showing the species-specific abundance, total abundance, species richness, and Sh diversity index of bumblebees recorded on Beewalk surveys across 50 UK transect sites. These are listed against the average maximum temperatures for the social bumblebee colony period (April-July) for the year preceding the survey, the average miniimum temperature for the solitary bumblebee colony stage (August-March) preceding the survey, and the number of heatwave days in the year preceding surveys.<br><br><br>
DOI: 10.6084/m9.figshare.24866523.v3
title: <i>Bombus </i>Species - Temperature.xlsx

description: Species - TemperatureDatasheet showing the species-specific abundance, total abundance, species richness, and Sh diversity index of bumblebees recorded on Beewalk surveys across 50 UK transect sites. These are listed against the average maximum temperatures for the social bumblebee colony period (April-July) for the year preceding the survey, the average miniimum temperature for the solitary bumblebee colony stage (August-March) preceding the survey, and the number of heatwave days in the year preceding surveys.<br><br><br>
DOI: 10.6084/m9.figshare.24866523.v4
title: <i>Bombus </i>Species - Temperature.xlsx

description: Species - TemperatureDatasheet showing the species-specific abundance, total abundance, species richness, and Sh diversity index of bumblebees recorded on Beewalk surveys across 50 UK transect sites. These are listed against the average maximum temperatures for the social bumblebee colony period (April-July) for the year preceding the survey, the average miniimum temperature for the solitary bumblebee colony stage (August-March) preceding the survey, and the number of heatwave days in the year preceding surveys.<br><br><br>
DOI: 10.15468/dl.q8t54q
title: Occurrence Download

description: A dataset containing 23821 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Puma concolor (Linnaeus, 1771)"
 ]
}

 The dataset includes 23821 records from 374 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063118-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ewxz9x
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-43.92811 -20.40713,-43.92936 -20.42135,-43.91551 -20.42636,-43.90441 -20.41712,-43.88718 -20.41977,-43.8672 -20.43737,-43.83832 -20.4375,-43.83047 -20.44738,-43.80142 -20.45367,-43.7978 -20.4619,-43.80402 -20.48528,-43.79772 -20.4898,-43.79846 -20.50425,-43.7662 -20.50201,-43.76686 -20.48804,-43.75586 -20.48248,-43.75739 -20.47135,-43.7476 -20.46016,-43.71541 -20.46395,-43.68745 -20.43151,-43.6596 -20.43375,-43.65446 -20.4446,-43.62645 -20.46241,-43.62431 -20.47152,-43.61329 -20.47076,-43.58515 -20.494,-43.58012 -20.50845,-43.59756 -20.54064,-43.59404 -20.55278,-43.60061 -20.56183,-43.58999 -20.57467,-43.60135 -20.5841,-43.58572 -20.5916,-43.57387 -20.5895,-43.56468 -20.60579,-43.53685 -20.60128,-43.53288 -20.59474,-43.5001 -20.62335,-43.48739 -20.6217,-43.45824 -20.63227,-43.44223 -20.62297,-43.45097 -20.60885,-43.45063 -20.59526,-43.43329 -20.59831,-43.42732 -20.57845,-43.41631 -20.58146,-43.41266 -20.56769,-43.40307 -20.56544,-43.40334 -20.54704,-43.41661 -20.54398,-43.43017 -20.51959,-43.42661 -20.49027,-43.44587 -20.48495,-43.45006 -20.46951,-43.48878 -20.45628,-43.4957 -20.44647,-43.47234 -20.40599,-43.47695 -20.39626,-43.47013 -20.38553,-43.47097 -20.37147,-43.46061 -20.3601,-43.47241 -20.34556,-43.46193 -20.3311,-43.46808 -20.31788,-43.45205 -20.29971,-43.45999 -20.2845,-43.45277 -20.26998,-43.46293 -20.26221,-43.45931 -20.24953,-43.47009 -20.24217,-43.46984 -20.22265,-43.4999 -20.21537,-43.50224 -20.19385,-43.49516 -20.16944,-43.50635 -20.17209,-43.53372 -20.16086,-43.54398 -20.17604,-43.54154 -20.18218,-43.54897 -20.1853,-43.53817 -20.20204,-43.56836 -20.2063,-43.58075 -20.21776,-43.61826 -20.19371,-43.61906 -20.2088,-43.62953 -20.20909,-43.63656 -20.21962,-43.64983 -20.22433,-43.6523 -20.24019,-43.66423 -20.22955,-43.68458 -20.24177,-43.69012 -20.23145,-43.70127 -20.22897,-43.70699 -20.24343,-43.69623 -20.25455,-43.71287 -20.26471,-43.75138 -20.26812,-43.75852 -20.27866,-43.75361 -20.28394,-43.7594 -20.2982,-43.75608 -20.30434,-43.7709 -20.30337,-43.77219 -20.31326,-43.78047 -20.31023,-43.79717 -20.32122,-43.79857 -20.34194,-43.8031 -20.35205,-43.81561 -20.35471,-43.81124 -20.36201,-43.82024 -20.36798,-43.81879 -20.37771,-43.83806 -20.38595,-43.85486 -20.3835,-43.86345 -20.39357,-43.90515 -20.38045,-43.93082 -20.3829,-43.92811 -20.40713))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063121-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qgvp4
title: Occurrence Download

description: A dataset containing 183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.48_1",
 "TaxonKey is one of (Vaccinium caespitosum Michx., Vaccinium caespitosum var. paludicola (Camp) Hultén, Vaccinium caespitosum var. caespitosum, Vaccinium caespitosum var. angustifolium A.Gray, Vaccinium caespitosum var. arbuscula A.Gray, Vaccinium caespitosum var. cuneifolium Nutt.)"
 ]
}

 The dataset includes 183 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063122-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4ys8u
title: Occurrence Download

description: A dataset containing 81690 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is USA.10_1",
 "TaxonKey is Ardeidae"
 ]
}

 The dataset includes 81690 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063123-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvke7c
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Mastacembelus erythrotaenia Bleeker, 1850"
 ]
}

 The dataset includes 116 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063124-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zmwrcb
title: Occurrence Download

description: A dataset containing 257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingCountry is Argentina",
 "TaxonKey is Sus scrofa Linnaeus, 1758"
 ]
}

 The dataset includes 257 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063125-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c59c6sc2s
title: MassIVE MSV000095572 - Inhibition of Cbl-b restores effector functions of human intratumoral NK cells
title: Background: T cell-based immunotherapies including immune checkpoint blockade (ICB) and chimeric antigen receptor (CAR) T cells can induce durable responses in cancer patients. However, clinical efficacy is limited due to the ability of cancer cells to evade immune surveillance. While T cells have been the primary focus of immunotherapy, recent research has highlighted the importance of Natural Killer (NK) cells in directly recognizing and eliminating tumor cells and playing a key role in the set-up of an effective adaptive immune response. The remarkable potential of NK cells for cancer immunotherapy is demonstrated by their ability to broadly identify stressed cells, irrespective of the presence of neoantigens, and their ability to fight tumors that have lost their Major Histocompatibility Complex class I (MHC I) expression due to acquired resistance mechanisms. However, like T cells, NK cells can become dysfunctional within the tumor microenvironment. Strategies to enhance and reinvigorate NK cell activity hold potential for bolstering cancer immunotherapy. Method: In this study, we conducted a high-throughput screen to identify molecules that could enhance primary human NK cell function. After compound validation, we investigated the effect of the top performing compound on dysfunctional NK cells that were generated by a newly developed in vitro platform. Functional activity of NK cells was investigated utilizing compounds alone and in combination with checkpoint inhibitor blockade. The findings were validated on patient-derived intratumoral dysfunctional NK cells from different cancer types. Results: The screening approach led to the identification of a Cbl-b inhibitor enhancing the activity of primary human NK cells. Furthermore, the Cbl-b inhibitor was able to reinvigorate the activity of in vitro generated and patient-derived dysfunctional NK cells. Finally, Cbl-b inhibition combined with TIGIT blockade further increased the cytotoxic potential and reinvigoration of both in vitro generated and patient-derived intratumoral dysfunctional NK cells. Conclusion: These findings underscore the relevance of Cbl-b inhibition in overcoming NK cells dysfunctionality with the potential to complement existing immunotherapies and improve outcomes for cancer patients.
DOI: 10.25345/c55m62j9w
title: MassIVE MSV000095573 - Acetate enhances spatial memory in female mice via sex- and brain region-specific epigenetic and transcriptional remodeling
title: New approaches to enhance learning and memory are of critical interest given the rapidly increasing populations affected by cognitive decline. Here, we use a combination of behavioral, proteomic and genomic approaches to demonstrate that exogenous acetate enhances memory in a brain region- and sex-specific manner. We show that acetate facilitates the formation of dorsal hippocampus-dependent spatial memories in female but not in male mice, while not affecting cortex-dependent non-spatial memories in either sex. Acetate-enhanced spatial memory is accompanied by increased acetylation of histone variant H2A.Z, and upregulation of genes implicated in spatial learning in the dorsal hippocampus of female mice. The effect of acetate on dorsal hippocampal histone modifications and gene expression shows marked differences between females and males both during memory consolidation and following recall, in line with the sex-specific behavioral outcomes. Overall, our findings outline acetate treatment as a promising approach to enhance memory formation in females, and will guide the development of future therapeutic interventions for various forms of dementia.
DOI: 10.25345/c5x63bh4w
title: MassIVE MSV000095575 - Prenylation in Th1 cells assessed by click chemistry
title: T helper cell activation is highly regulated to ensure proper immune responses while avoiding autoimmune reactions. Cell functions are determined by regulation of various levels of gene expression including posttranslational modifications of proteins. Protein prenylation is a posttranslational modification, which can be influenced by statin treatment and was shown to play a role in the differentiation and activation of various T cell populations, including Th1 cells. However, it is largely unknown which proteins are prenylated in Th1 cells and what the effect of statin treatment on protein prenylation is in this context. Here, using mass spectrometry, we show the comprehensive identification of prenylated proteins in human Th1 cells including changes during their activation, before analyzing the effect of statin treatment on this process. This approach additionally uncovered the prenylation of proteins, not yet known to be prenylated, including so far unknown motifs. These data provide valuable insights into novel aspects of protein prenylation in Th1 cell activation and deepen our understanding of the intended or unintended effects of statin treatment on the human immune system.
DOI: 10.25345/c51z4248g
title: MassIVE MSV000095574 - Application of the Mass Spectrometry-High Throughput Technique UHPLC-MS/MS for Human Brain Tumors Diagnosis: Case study of the Grade-IV Astrocytoma and Meningiomal Metastasis
title: We focused our study on the Grade-IV astrocytoma (IDH1-mutant gliomas) and meningiomal metastasis from carcinoma as the common brain tumors in our hospital medium. Samples were first monitored for the histopathological diagnosis followed by the IHC staining for the characterization of the stemness genes markers. Then, a shotgun proteomic-based approach was performed by protein extraction, reduction and alkylation, followed by trypsin digestion into peptide mixture for analysis using the Nano-Ultra-high performance liquid chromatography-tandem-MS (UHPLC-MS/MS). By proteomic analysis, a total of 836 and 3789 different expressed proteins were identified respectively in IDH-mutant gliomas and meningiomal metastasis. By bioinformatics analysis, the major enrichment pathways and the relevance of each protein with its meaningful relationships were identified, as well as the most hub genes encoding for the prognostic biomarkers of malignant, metastatic and invasiveness form of cancer with poor prognosis.
DOI: 10.25345/c5sf2mp85
title: MassIVE MSV000095576 - Raphe and Ventrolateral Medulla Proteomics in Sudden Unexplained Death in Childhood with Febrile Seizure History
title: Sudden unexplained death in childhood (SUDC) is death of a child 12 months old that is unexplained after autopsy and detailed analyses. Among SUDC cases, 28.8% have febrile seizure (FS) history, versus 2-5% in the general population. SUDC cases share features with sudden unexpected death in epilepsy (SUDEP) and sudden infant death syndrome (SIDS), in which brainstem autonomic dysfunction is implicated. To understand whether brainstem protein changes are associated with FS history in SUDC, we performed label-free quantitative mass spectrometry on microdissected midbrain dorsal raphe, medullary raphe, and the ventrolateral medulla (n=8 SUDC-noFS, n=11 SUDC-FS). Differential expression analysis at p&lt;0.05 identified 178 altered proteins in dorsal raphe, 344 in medullary raphe, and 100 in the ventrolateral medulla. These proteins were most significantly associated with increased eukaryotic translation initiation (p=3.09x10-7, z=1.00), eukaryotic translation elongation (p=6.31x10-49, z=6.01), and coagulation system (p=1.32x10-5, z=1.00), respectively. The medullary raphe had the strongest enrichment for altered signaling pathways, including with comparisons to three other brain regions previously analyzed (frontal cortex, hippocampal dentate gyrus, cornu ammonus). Histological analyses of serotonin receptors identified 2.1-fold increased 5HT2A in the medullary raphe of SUDC-FS (p= 0.025). Weighted gene correlation network analysis (WGCNA) of case history indicated that longer FS history duration significantly correlated with protein levels in the medullary raphe and ventrolateral medulla; the most significant gene ontology biological processes were decreased cellular respiration (p=9.8x10-5, corr=-0.80) in medullary raphe and synaptic vesicle cycle (p=1.60x10-7, corr=-0.90) in the ventrolateral medulla. Overall, FS in SUDC was associated with more protein differences in the medullary raphe and was related to increased translation-related signaling pathways. Our study informs on SUDC pathogenesis and the potential development of prognostic biomarkers and preventive therapeutic strategies.
DOI: 10.15468/dl.4pvpps
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Meiracyllium gemma Rchb.f., Meiracyllium trinasutum Rchb.f.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 159 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063127-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5np1ww3j
title: MassIVE MSV000095577 - Swinglea glutinosa polar compounds by LC-MS
title: Datos espectrales LC-MS de los extractos de cascara, pulpa y hojas de S. glutinosa.
DOI: 10.15468/dl.yaqg5u
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-78.79821 -22.23016,-52.69737 -22.23016,-52.69737 5.05685,-78.79821 5.05685,-78.79821 -22.23016))",
 "TaxonKey is Mikrogeophagus altispinosus (Haseman, 1911)"
 ]
}

 The dataset includes 14 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063128-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nusstb
title: Occurrence Download

description: A dataset containing 254219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "PublishingOrg is 90fd6680-349f-11d8-aa2d-b8a03c50a862",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 254219 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063126-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sjzcpa
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (BRA.13.540_2, BRA.13.460_2)",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 30 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063129-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13307485
title: Supporting Data for "Hydrogen ejection from hydrocarbons: Characterization and relevance in soot formation and interstellar chemistry."

description: Q-Chem output files and scripts for rate computation (Variational TST at constant temperature and RRKM for constant energy) for the results reported in "Hydrogen ejection from hydrocarbons: Characterization and relevance in soot formation and interstellar chemistry."