cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/ng8sm3fwcd.1
title: Supplementary data

description: Supplementary questionnaire for Hyperparathyroidism case-based discussion questionnaire.

It shows all the questions that were asked to clinicians.
DOI: 10.18739/a2w37kw4j
title: Thermal State of Permafrost in North America - continuously observed ground temperatures, 2018-2019

description: This work coordinates data collection using standard equipment and protocols at North American and Russian sites. These data sets provide the baseline to assess the future rates of change in near-surface permafrost temperatures and permafrost boundaries, and to provide spatial data for validation of climate scenario models and temperature reanalysis approaches. The work represents the United States (US) contribution to the ongoing activities of the Global Terrestrial Network for Permafrost that obtains temperatures in a large number of globally distributed monitoring sites in order to provide a snapshot of permafrost temperatures in both time and space.
 The US National Science Foundation (NSF) funded this work with award #0520578, #0632400, #0856864, and #1304271.
DOI: 10.7916/2xbh-8346
title:  GRID3 COD - Health Areas v2.0
DOI: 10.5281/zenodo.14110150
title: Data for fitting a statistical global burned area model for seamless integration into Dynamic Global Vegetation Models

description: The dataset is a large R data.table object saved in RDS format. It contains global, monthly data spanning the period from 2002 to 2018, with a 0.5 degrees spatial resolution. The dataset is utilized to develop and validate statistical models for predicting global burnt areas resulting from wildfires.
DOI: 10.5281/zenodo.14582844
title: Seasonal Variation and Key Controls of Groundwater Ammonium Concentrations in Hypoxic/Anoxic Riparian Sediments

description: The Seasonal-Ammonium-Data file includes groundwater chemistry, temperature, water level, and hydraulic gradient data collected from November 2019 - November 2023. Two riparian sites upstream of milldams were monitored: the Roller Milldam (RM) near Manheim, PA on the Chiques Creek and the Cooch Milldam (CM) on the Christina River in Newark, DE, USA.
DOI: 10.6084/m9.figshare.28069883
title: Supplementary Material for: ISPAD Clinical Practice Consensus Guidelines 2024 Diabetes Technologies: Glucose Monitoring

description: SUMMARY OF WHAT IS NEW OR DIFFERENT
Since the 2022 ISPAD Guidelines, there have been advancements in continuous glucose monitoring (CGM) devices and the evidence supporting their use. Research on CGM effectiveness has proliferated, encompassing long-term observational studies, data from registries, and clinical trials.
Changes to previous recommendations include: 
1. A stronger emphasis on the pivotal role of CGM in managing diabetes among children and adolescents with Type 1 diabetes (T1D), especially from diabetes diagnosis, as well as potential benefits in youth with Type 2 diabetes (T2D). 
2. A greater recognition of the importance of ongoing education and training for both health professionals and families in CGM use, including data interpretation, to ensure successful adoption and to optimize outcomes.
3. Updated information on CGM systems, technical aspects, and key features to guide device suitability and inform individual choice.
4. Increased evidence concerning CGM benefits for decreasing diabetic ketoacidosis (DKA) and severe hypoglycemic events; and improving quality of life in children and adolescents with T1D. 
5. Recent developments concerning practical considerations associated with CGM utilization, encompassing topics such as exercise, skin concerns and use in telemedicine.
DOI: 10.5281/zenodo.7937722
title: Extract from the glazed tile heritage database of Covilhã-Portugal (12 elements)

description: Extract from the tile heritage database of Covilhã - Portugal: geographic and alphanumeric data of 12 buildings with facades fully or partially covered with tiles, of heritage interest (registered in the SIPA), located in the municipality of Covilhã. The information is related to the buildings and tile compositions on its facades. Building data Building location: country, region, district, municipality, parish, street and house number, Lon WGS84, Lat WGS84, X ETRS89, Y ETRS89, Z elevation. SIPA: designation, identification number, link to SIPA data. Building identification: if it does not exist, an ID must be assigned. Protection and conditioning: world heritage, built heritage, benefits from a protection zone, in the process of classification, in study, non-existent. Public interest, national monument, municipal interest. Property type: public, private. Ownership: ownership information. Case number at municipal services: number ID. Typology: residence, industrial, commercial, religious, panel or other. Occupation: property occupation. Architectural style: dominant, secondary. Other decorative elements than tiles: if existing. General building condition (exterior): good, reasonable, bad, doom. Interventions chronology: if existing. Main moments of design, application, conservation, remodeling, restoration, and management. Bibliography, drawings and documents: source, link. Pictures: images. Glazed tile data Tile location: facade, inside building. Tile identification: ID number. Construction period: main construction periods. Local context: brief description of the glazed tile object surroundings, in its geophysical, historical, and socio-cultural aspects. Classification 1: coating, ceramic panel, toponymical plate or other. Classification 2: facade, patio, external staircase, balcony, wall, wall panel, small religious panel, caption. Classification 3: pattern, repeat composition, figurative, ornamental, or loose figure. Iconography: religion, biblical, magic, mysticism, nature, human being – humanity, society - civilization – culture, history, ancient history, literature, classical mythology, abstract ideas and concepts, abstract - non-figurative art. Monochrome or polychromatic: monochrome, polychromatic. Objective and succinct tile description: From general to particular: building, space, glazed tile, and section. Material (ceramic product): faience, stone dust, stoneware, porcelain, terracotta. Tile decoration technique: information on tile manufacture, divided into conformation, decoration and application. Composition dimensions: height x width (meters). Tile dimensions: height x width (centimetres). Tile condition: good, reasonable, bad. Authorship: company, artist, painter or other. Authorship nationality: country. Interventions chronology: if existing. Main moments of design, application, conservation, remodelling, restoration, and management. Bibliography, drawings and documents: source, link. Pictures: images.
DOI: 10.6084/m9.figshare.21995072.v6
title: Files for Main Figure 3

description: <b>Simulated reads Section</b>Simulated_reads_quantification_mat : Quantified TEs in TPM counts in simulated short-read measured by 7 approaches. File used for main figure 3.<b>Cell line Section</b>6 Cell lines TE matrices quantified by long-read, Telescope (short-read), LocusMasterTE (short-read)SG-Nex_A549: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using A549 cell line in SG-NEx studySG-Nex_HepG2: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using HepG2 cell line in SG-NEx studySG-Nex_HCT116: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using HCT116 cell line in SG-NEx studySG-Nex_K562: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using K562 cell line in SG-NEx studySG-Nex_MCF-7: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using MCF-7 cell line in SG-NEx studyInhouse_HCT116: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using HCT116 sample generated by our lab
DOI: 10.18739/a2f47gv9k
title: Thermal State of Permafrost in North America - continuously observed ground temperatures, 2020-2021

description: This work coordinates data collection using standard equipment and protocols at North American and Russian sites. These data sets provide the baseline to assess the future rates of change in near-surface permafrost temperatures and permafrost boundaries, and to provide spatial data for validation of climate scenario models and temperature reanalysis approaches. The work represents the United States (US) contribution to the ongoing activities of the Global Terrestrial Network for Permafrost that obtains temperatures in a large number of globally distributed monitoring sites in order to provide a snapshot of permafrost temperatures in both time and space. The US National Science Foundation (NSF) funded this work with award #0520578, #0632400, #0856864, and #1304271.
DOI: 10.5281/zenodo.8399017
title: Circumpolar Landcover Units

description: This record is obsolete.

A new version has been published under https://zenodo.org/records/14235736

Landcover units have been derived from Copernicus Sentinel-1 und Sentinel-2 data acquired between 2016 and 2022 for the Arctic tundra biome. 23 units of which 20 represent different vegetation characteristics and soil conditions are provided. The units have been identified with K-means over a representative transect and in a second step retrieved across the entire Arctic north of the treeline. The description of the units is based on several thousand samples from vegetation surveys and soil probes.

The units are supplied at 10m resolution in nine irregular tiles. Auxiliary data for quality information and input acquisition dates are supplied in a separate shape file. The majority within 1kmx1km areas is supplied as csv (centre points). Units are documented in detail in Bartsch, A., Efimova, A., Widhalm, B., Muri, X., von Baeckmann, C., Bergstedt, H., Ermokhina, K., Hugelius, G., Heim, B., and Leibman, M.: Circumarctic land cover diversity considering wetness gradients, Hydrol. Earth Syst. Sci., 28, 2421–2481, https://doi.org/10.5194/hess-28-2421-2024, 2024.
description: Contains modified Copernicus Sentinel data 2016 - 2022. This study and associated datasets were designed for scientific purposes only and should not be taken as professional engineering advice. This work was supported by the European Space Agency CCI+ Permafrost and AMPAC-Net projects, the European Research Council project No. 951288, and has received funding under the European Union's Horizon 2020 Research and Innovation Programme under Grant Agreement No. 869471 (CHARTER).
description: The masking of the Alaska tile, the projection of the Svalbard tile and the product user guide document have been updated. The next full update is scheduled for autumn 2024.

For separation of artificial surfaces it is recommended to combine the units with: Bartsch, A., Widhalm, B., von Baeckmann, C., Efimova, A., Tanguy, R., & Pointner, G. (2023). Sentinel-1/2 derived Arctic Coastal Human Impact dataset (SACHI) (v2.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.10160636
DOI: 10.6084/m9.figshare.28309874
title: Supplementary Material for: Successful Response to First-Line Carboplatin, Pemetrexed, and Bevacizumab for Peritoneal Mesothelioma –Two Case Reports–

description: Introduction; Peritoneal mesothelioma is an extremely rare malignancy of the peritoneum. It has a poor prognosis, and the optimal systemic chemotherapy remains controversial. Here, we report two cases of peritoneal mesothelioma with long-term survival and complete response to carboplatin, pemetrexed, and bevacizumab chemotherapy. 
Case presentation; Both patients were treated with six cycles of carboplatin (AUC 5), pemetrexed (750 mg/m2), and bevacizumab (15 mg/kg) followed by pemetrexed and bevacizumab as maintenance therapy. Partial response continued for over 6 years in case 1 and complete response was obtained in case 2. The patient in case 1 died after 7 years due to accidental pneumonia, and the patient in case 2 remained disease-free for over 2 years after initiation of chemotherapy. 
Conclusion; Little information is available regarding angiogenesis in malignant peritoneal mesothelioma and carboplatin/pemetrexed/bevacizumab ae off-labeled chemotherapy by Japanese healthcare system as yet. However, our experience suggested that combined chemotherapy with bevacizumab is a feasible option fir systemic chemotherapy in cases of peritoneal mesothelioma.
DOI: 10.5517/ccdc.csd.cc269v5k
title: CCDC 2035248: Experimental Crystal Structure Determination

description: Related Article: Yüksel Sahin, Armin Berndt, Gertraud Geiseler, Werner Massa|2020|CSD Communication|||
DOI: 10.5281/zenodo.3723295
title: LUNA16 Part 1/2

description: This dataset contains the download data for the LUNA16 challenge available at https://luna16.grand-challenge.org/ The dataset is bigger than Zenodo currently allows, the remaining files can be found in LUNA16 Part 2/2. This dataset includes the images from the LIDC/IDRI dataset in a different format, together with additional annotations. The LIDC/IDRI dataset is available at https://wiki.cancerimagingarchive.net/display/Public/LIDC-IDRI under a Creative Commons Attribution 3.0 Unported License.
DOI: 10.15468/dl.suxys2
title: Occurrence Download

description: A dataset containing 1360662 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is ZAF.9_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d"
 ]
}

 The dataset includes 1360662 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007210-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9vzput
title: Occurrence Download

description: A dataset containing 7585 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Russula virescens (Schaeff.) Fr."
 ]
}

 The dataset includes 7585 records from 225 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007215-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.22003049.v4
title: Long Read Samples readily usable in LocusMasterTE

description: Long-read TE quantifications in 6 samples. Two HCT116 samples exist generated by our own lab and by SG-NEx study.<br>1. long_read_TE_quantification_SG-NEx_K562: TE TPM counts in SG-NEx K562(sample id: ERR6053079)2. long_read_TE_quantification_SG-NEx_HepG2: TE TPM counts in SG-NEx HepG2(sample id: ERR6053063)3. long_read_TE_quantification_SG-NEx_A549: TE TPM counts in SG-NEx A549(sample id: ERR6053016)4. long_read_TE_quantification_SG-NEx_MCF-7: TE TPM counts in SG-NEx MCF-7(sample id: ERR6053093)5. long_read_TE_quantification_own_HCT116: TE TPM counts in own HCT116(GEO: GSE225380)6. long_read_TE_quantification_SG-NEx_HCT116: TE TPM counts in SG-NEx HCT116(sample id: ERR6053040)
DOI: 10.6084/m9.figshare.22003049
title: Long Read Samples readily usable in LocusMasterTE

description: Long-read TE quantifications in 6 samples. Two HCT116 samples exist generated by our own lab and by SG-NEx study.<br>1. long_read_TE_quantification_SG-NEx_K562: TE TPM counts in SG-NEx K562(sample id: ERR6053079)2. long_read_TE_quantification_SG-NEx_HepG2: TE TPM counts in SG-NEx HepG2(sample id: ERR6053063)3. long_read_TE_quantification_SG-NEx_A549: TE TPM counts in SG-NEx A549(sample id: ERR6053016)4. long_read_TE_quantification_SG-NEx_MCF-7: TE TPM counts in SG-NEx MCF-7(sample id: ERR6053093)5. long_read_TE_quantification_own_HCT116: TE TPM counts in own HCT116(GEO: GSE225380)6. long_read_TE_quantification_SG-NEx_HCT116: TE TPM counts in SG-NEx HCT116(sample id: ERR6053040)
DOI: 10.6084/m9.figshare.22003049.v3
title: Long Read Samples readily usable in LocusMasterTE

description: Long-read TE quantifications in 6 samples. Two HCT116 samples exist generated by our own lab and by SG-NEx study.
<br>
1. long_read_TE_quantification_SG-NEx_K562: TE TPM counts in SG-NEx K562(sample id: ERR6053079)
2. long_read_TE_quantification_SG-NEx_HepG2: TE TPM counts in SG-NEx HepG2(sample id: ERR6053063)
3. long_read_TE_quantification_SG-NEx_A549: TE TPM counts in SG-NEx A549(sample id: ERR6053016)
4. long_read_TE_quantification_SG-NEx_MCF-7: TE TPM counts in SG-NEx MCF-7(sample id: ERR6053093)
5. long_read_TE_quantification_own_HCT116: TE TPM counts in own HCT116(GEO: )
6. long_read_TE_quantification_SG-NEx_HCT116: TE TPM counts in SG-NEx HCT116(sample id: ERR6053040)
DOI: 10.6084/m9.figshare.21995192
title: Supplementary Files

description: Important files containing frequently used gene and TE annotation files
<br>
1. MANE_genes_hg38: MANE annotated gene lists
2. hg38_gencode_rmsk_indi: Combination of TE individual gtf file and hg38 gencode V41 gtf file
3. hg38_repeatmasker: RepeatMasker database for hg38
4. hg38_gencode_rmsk_indi_loc_annotate: TE locational information(exonic, intronic, intergenic) at individual levels
4.long_read_TPM_simulation:TPM values from long-read used during simulating short-read in Spanki
DOI: 10.6084/m9.figshare.21995192.v4
title: Supplementary Files

description: Important files containing frequently used gene and TE annotation files
<br>
1. MANE_genes_hg38: MANE annotated gene lists
2. hg38_gencode_rmsk_indi: Combination of TE individual gtf file and hg38 gencode V41 gtf file
3. hg38_repeatmasker: RepeatMasker database for hg38
4. hg38_gencode_rmsk_indi_loc_annotate: TE locational information(exonic, intronic, intergenic) at individual levels
4.long_read_TPM_simulation:TPM values from long-read used during simulating short-read in Spanki
DOI: 10.6084/m9.figshare.21995192.v3
title: Supplementary Files

description: Important files containing frequently used gene and TE annotation files
<br>
1. MANE_genes_hg38: MANE annotated gene lists
2. hg38_gencode_rmsk_indi: Combination of TE individual gtf file and hg38 gencode V41 gtf file
3. hg38_repeatmasker: RepeatMasker database for hg38
4. hg38_gencode_rmsk_indi_loc_annotate: TE locational information(exonic, intronic, intergenic) at individual levels
4.long_read_TPM_simulation:TPM values from long-read used during simulating short-read in Spanki
DOI: 10.6084/m9.figshare.21994868
title: Files for Main Figure 1

description: <b>Files need to generate Main Figure 1</b><br>1. Long_read_TE_fc: Transposable elements individual quantified featureCounts result using long-read2. Short_read_TE_fc: Transposable elements individual quantified featureCounts result using short-read3. Long_read_coding_genes_fc: Coding genes quantified featureCounts result using long-read4. Short_read_coding_genes_fc: Coding genes individual quantified featureCounts result using long-read5. Inhouse_HCT116_telescope.tsv: Telescope output using inhouse HCT116 with random option6. LocusMasterTE-TE_counts.tsv: LocusMasterTE output using inhouse HCT116 6. telescope-TE_counts: Telescope output using inhouse HCT116
DOI: 10.6084/m9.figshare.21994868.v8
title: Files for Main Figure 1

description: <b>Files need to generate Main Figure 1</b><br>1. Long_read_TE_fc: Transposable elements individual quantified featureCounts result using long-read2. Short_read_TE_fc: Transposable elements individual quantified featureCounts result using short-read3. Long_read_coding_genes_fc: Coding genes quantified featureCounts result using long-read4. Short_read_coding_genes_fc: Coding genes individual quantified featureCounts result using long-read5. Inhouse_HCT116_telescope.tsv: Telescope output using inhouse HCT116 with random option6. LocusMasterTE-TE_counts.tsv: LocusMasterTE output using inhouse HCT116 6. telescope-TE_counts: Telescope output using inhouse HCT116
DOI: 10.6084/m9.figshare.21994868.v7
title: Files for Main Figure 1

description: <b>Files need to generate Main Figure 1</b><br>1. Long_read_TE_fc: Transposable elements individual quantified featureCounts result using long-read2. Short_read_TE_fc: Transposable elements individual quantified featureCounts result using short-read3. Long_read_coding_genes_fc: Coding genes quantified featureCounts result using long-read4. Short_read_coding_genes_fc: Coding genes individual quantified featureCounts result using long-read5. Inhouse_HCT116_telescope.tsv: Telescope output using inhouse HCT116 with random option6. LocusMasterTE-TE_counts.tsv: LocusMasterTE output using inhouse HCT116 6. telescope-TE_counts: Telescope output using inhouse HCT116
DOI: 10.15468/dl.956un6
title: Occurrence Download

description: A dataset containing 68526 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lycoperdon perlatum Pers."
 ]
}

 The dataset includes 68526 records from 492 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007216-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34943/cd5559ce-b0a6-48ce-8b15-679294da645d
title: Burrard Inlet Carbon Dioxide Sensor Deployed 2025-01-25

description: The Pro-Oceanus CO2-Pro CV (SN 36-322-75) was deployed on 2025-01-25 at Burrard Inlet. Burrard Inlet is a coastal fjord in southwestern British Columbia. This device is a Carbon Dioxide Sensor. Carbon Dioxide sensors monitor CO2 levels in the ocean. CO2 sensors measure the partial pressure, or the concentration of dissolved CO2 in seawater by a variety of techniques. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.15468/dl.5cut7k
title: Occurrence Download

description: A dataset containing 530 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Abronia graminea (Cope, 1864)"
 ]
}

 The dataset includes 530 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007217-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8s6q69
title: Occurrence Download

description: A dataset containing 788586 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Microcarbo niger (Vieillot, 1817), Phalacrocorax fuscicollis Stephens, 1826, Phalacrocorax carbo sinensis (Staunton, 1796))"
 ]
}

 The dataset includes 788586 records from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007213-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7thv5k
title: Occurrence Download

description: A dataset containing 191105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Anhinga melanogaster Pennant, 1769"
 ]
}

 The dataset includes 191105 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007214-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.