cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12114129.v2
title: Culicidae evolutionary history focusing on the Culicinae subfamily

description: Mosquitoes are insects of medical importance due their role as vectors of different pathogens to humans and other mammals. There is a lack of information about the evolutionary history and phylogenetic positioning of the majority of mosquitoes species. Here we sequenced the mitogenomes of mosquitoes species through low-coverage sequencing and data mining. A total of 37 draft mitogenomes were assembled representing 11 genera and 16 of those were sequenced for the first time. The recovered mitogenomes showed a coverage breadth average of 81.24%. Most of the species were clustered in monophyletic clades with other members of their own genus with exception of the Aedini tribe which was paraphyletic corroborating other findings. We established for the first time the monophyletic status of eight species from the tribe Mansoniini including both Coquillettidia and Mansonia genus and established the basal positioning of Aedeomyiini and Uranotaeniini tribes regarding the Culicinae subfamily. Molecular clock analysis dated the Culicidae family emergence around 273 MYA and the split between Anophelinae and Culicinae subfamily around 182 MYA in the Jurassic period. Low-coverage sequencing is effective to recover mitogenomes, establish phylogenetic knowledge generating basic fundamental information to the understanding of the role of these species as pathogen vectors.
DOI: 10.6084/m9.figshare.12113898.v1
title: Processed_Datasets.zip

description: Processed Datasets associated with the study entitled "Expression based biomarkers and models to classify early and late stage samples of Papillary Thyroid Carcinoma"<b><i></i></b><br>
DOI: 10.6084/m9.figshare.12111210
title: Metadata record for: Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain

description: This dataset contains key characteristics about the data described in the Data Descriptor Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12111210.v1
title: Metadata record for: Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain

description: This dataset contains key characteristics about the data described in the Data Descriptor Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12111018
title: Different heat-stress response of field and laboratory cultured Nematostella vectensis

description: To survive, organisms must deploy a range of molecular, physiological, and behavioral responses to avoid or counteract harmful environmental conditions. Often these responses to environmental stressors are complex, involving many mechanisms and interactions at cellular and organismal levels. Frequently an organism's response to environmental stressors, whether natural or anthropogenic, will involve changes in gene expression and regulation that consequently will alter physiology, development, or behavior. Moreover, animal origin and past growth conditions (e.g., in the field or laboratory) will change its response altogether. In this work, we present and discuss the differences in response to short-term thermal stress of lab-cultured and field-conditioned <i>Nematostella vectensis</i>. Using ATAC-seq and RNA-seq data, we found that the ability to effectively respond to stress is higher in field-conditioned animals, suggesting that acclimation by these animals prepares them to mount an efficient stress response. Field-conditioned animals had a more concentrated reaction, expressed as enrichment of the DNA repair mechanism pathway, while lab animals had a more diffuse reaction that involved a larger number of differentially expressed genes and enriched pathways including amino acid metabolism. Overall, this work presents the importance of experimentally addressing ecological questions in the field as many molecular mechanisms are altered compared to lab conditions.
DOI: 10.6084/m9.figshare.12111042
title: PCA data for Mtb actives vs Tables 3-12

description: Data for figure https://pubs.acs.org/doi/10.1021/acs.jmedchem.9b02075
DOI: 10.6084/m9.figshare.12111018.v1
title: Different heat-stress response of field and laboratory cultured Nematostella vectensis

description: To survive, organisms must deploy a range of molecular, physiological, and behavioral responses to avoid or counteract harmful environmental conditions. Often these responses to environmental stressors are complex, involving many mechanisms and interactions at cellular and organismal levels. Frequently an organism's response to environmental stressors, whether natural or anthropogenic, will involve changes in gene expression and regulation that consequently will alter physiology, development, or behavior. Moreover, animal origin and past growth conditions (e.g., in the field or laboratory) will change its response altogether. In this work, we present and discuss the differences in response to short-term thermal stress of lab-cultured and field-conditioned <i>Nematostella vectensis</i>. Using ATAC-seq and RNA-seq data, we found that the ability to effectively respond to stress is higher in field-conditioned animals, suggesting that acclimation by these animals prepares them to mount an efficient stress response. Field-conditioned animals had a more concentrated reaction, expressed as enrichment of the DNA repair mechanism pathway, while lab animals had a more diffuse reaction that involved a larger number of differentially expressed genes and enriched pathways including amino acid metabolism. Overall, this work presents the importance of experimentally addressing ecological questions in the field as many molecular mechanisms are altered compared to lab conditions.
DOI: 10.6084/m9.figshare.12111042.v1
title: PCA data for Mtb actives vs Tables 3-12

description: Data for figure https://pubs.acs.org/doi/10.1021/acs.jmedchem.9b02075
DOI: 10.6084/m9.figshare.12110979
title: litter decomposition data.xlsx

description: The data is the litter decomposition and C, N, and P release
DOI: 10.6084/m9.figshare.12110979.v1
title: litter decomposition data.xlsx

description: The data is the litter decomposition and C, N, and P release
DOI: 10.25810/6qjv-1296.28
title: Indian Newspaper Coverage of Climate Change or Global Warming, 2000-2020 - July 2020

description:         The Media and Climate Change Observatory Data monitors 117 sources (across newspapers, radio and TV) in 53 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.12110979.v3
title: litter decomposition data.xlsx

description: The data is the litter decomposition and C, N, and P release
DOI: 10.6084/m9.figshare.12110979.v2
title: litter decomposition data.xlsx

description: The data is the litter decomposition and C, N, and P release
DOI: 10.34740/kaggle/dsv/1441948
title: COVID-19 cases by Continent
DOI: 10.6084/m9.figshare.12110910
title: Proneness to Moral Emotions and Disruption to Psychological Contract

description: <b>Dataset of Proneness to Moral Emotions (GASP/Guilt and Shame Proneness) and Disruption to Psychological Contract</b><br>Guilt Proneness consists ofNBE = negative behavior evaluationREP = repair<br>Shame proneness consists ofNSE = negative self evaluationWIT = withdrawal<br><i>In this dataset, higher total scores on the scale indicate a person's perception that his/her proneness to moral emotions is increasingly higher.<br></i><br>Disruption to Psychological Contract = Psychological Contract Breach/Violation (PCB)<br><i>In this dataset, higher total scores indicate a person's perception that his/her psychological contract is increasingly fulfilled or <b>not </b>disrupted/violated.</i><i><br></i><i>The items with label "GASP....DEL" and </i><i>"PCB....DEL" </i><i>are deleted ones because the item validities (corrected item-total correlations/CIT) are less than 0.250.</i><br>
DOI: 10.6084/m9.figshare.12110910.v1
title: Proneness to Moral Emotions and Disruption to Psychological Contract

description: <b>Dataset of Proneness to Moral Emotions (GASP/Guilt and Shame Proneness) and Disruption to Psychological Contract</b><br>Guilt Proneness consists ofNBE = negative behavior evaluationREP = repair<br>Shame proneness consists ofNSE = negative self evaluationWIT = withdrawal<br><i>In this dataset, higher total scores on the scale indicate a person's perception that his/her proneness to moral emotions is increasingly higher.<br></i><br>Disruption to Psychological Contract = Psychological Contract Breach/Violation (PCB)<br><i>In this dataset, higher total scores indicate a person's perception that his/her psychological contract is increasingly fulfilled or <b>not </b>disrupted/violated.</i><i><br></i><i>The items with label "GASP....DEL" and </i><i>"PCB....DEL" </i><i>are deleted ones because the item validities (corrected item-total correlations/CIT) are less than 0.250.</i><br>
DOI: 10.6084/m9.figshare.12110805
title: How to ask for technical help? IST 2018 dataset

description: All data for replicating the quantitative analysis described in the paper: F.<b> </b>Calefato<b>,</b> F. Lanubile, and N. Novielli (2018) "How to Ask for Technical Help? Evidence-based Guidelines for Writing Questions on Stack Overflow." <em>Information and Software Technology</em>, Vol. 94, pp. 186-207, DOI: 10.1016/j.infsof.2017.10.009
DOI: 10.6084/m9.figshare.12110805.v1
title: How to ask for technical help? IST 2018 dataset

description: All data for replicating the quantitative analysis described in the paper: F.<b> </b>Calefato<b>,</b> F. Lanubile, and N. Novielli (2018) "How to Ask for Technical Help? Evidence-based Guidelines for Writing Questions on Stack Overflow." <em>Information and Software Technology</em>, Vol. 94, pp. 186-207, DOI: 10.1016/j.infsof.2017.10.009
DOI: 10.6084/m9.figshare.12110790
title: Supplementary Movies from Why is cancer not more common? A changing microenvironment may help to explain why, and suggests strategies for anti-cancer therapy

description: All supplementary movies
DOI: 10.6084/m9.figshare.12110790.v1
title: Supplementary Movies from Why is cancer not more common? A changing microenvironment may help to explain why, and suggests strategies for anti-cancer therapy

description: All supplementary movies
DOI: 10.6084/m9.figshare.12110745
title: Extended data (Checklists and questionnaire) for the study titled "Implication of quality uncertainty on market exchange: The case of seed industry in Kilolo district, Tanzania".

description: Checklists and questionnaire from a study named "Implication of quality uncertainty on market exchange: The case of seed industry in Kilolo district, Tanzania".
DOI: 10.6084/m9.figshare.12110733
title: "Implication of quality uncertainty on market exchange: The case of seed industry in Kilolo district, Tanzania".

description: Data from farmers' survey conducted in kilolo dsitrict council under the study " <b>Implication of quality uncertainty on market exchange: The case of seed industry in Kilolo district, Tanzania.</b><br><b><br></b><b><br></b><b><br></b><b><br></b><b><br></b><b><br></b><b><br></b>
DOI: 10.6084/m9.figshare.12110745.v1
title: Extended data (Checklists and questionnaire) for the study titled "Implication of quality uncertainty on market exchange: The case of seed industry in Kilolo district, Tanzania".

description: Checklists and questionnaire from a study named "Implication of quality uncertainty on market exchange: The case of seed industry in Kilolo district, Tanzania".
DOI: 10.6084/m9.figshare.12110712
title: Musical Chords and Image Descriptors from Film Fantasia (Disney)

description: FANTASIAThis repository contains the data related to image descriptors and sounds associated with a selection of frames of the film Fantasia, produced by Disney.AboutThis repository contains data used in a doctoral thesis for the automatic composition of descriptive music. The information is extracted from the fragment of The Nutcracker from film Fantasia (Disney, 1940) using SIFT and BoVW, color quantization and CENS. Data- <b>Attributes 1-50:</b> weighted vector of visual words.- <b>Attributes 51-59:</b> red, green and blue values for three RGB colors.- <b>Note1, note2 and note3</b>: MIDI notes related to each frame of the film.LicenseData is available under MIT License. To make use of the data the article must be cited.
DOI: 10.6084/m9.figshare.12110691
title: Table S1. Sequence reads information. from An individualized mosaic of maternal microbial strains are transmitted to the infant gut microbial community

description: The original sequence files were sequenced and deposited by (A) Shao et al., (accession number: ERP115334) and (B) Goltsman et al., (accession number: PRJNA288562). (C) Fecal samples from donors (<i>n</i>=5), post-FMT dams (BRD, <i>n</i>=5) and their F1 progenies (<i>n</i>=20) were collected, sequenced, and deposited to NCBI by this study. The table shows the sequence read count before and after the filtering processes. HuM=Humanized Mice.
DOI: 10.6084/m9.figshare.12110733.v1
title: Raw data from farmers' survey under a research study titled "Implication of quality uncertainty on market exchange: The case of seed industry in Kilolo district, Tanzania".

description: Data from farmers' survey conducted in kilolo dsitrict council under the study " <b>Implication of quality uncertainty on market exchange: The case of seed industry in Kilolo district, Tanzania.</b><br><b><br></b><b><br></b><b><br></b><b><br></b><b><br></b><b><br></b><b><br></b>
DOI: 10.6084/m9.figshare.12110685
title: Table S6. WSS results between the human fecal sample and the gnotobiotic mouse. from An individualized mosaic of maternal microbial strains are transmitted to the infant gut microbial community

description: All pairwise comparisons were conducted between each donor feces vs. post-FMT dam (BRD) and their F1 progenies (F1-1, F1-2, F1-3, and F1-4). The resultant WSS scores are represented as a numerical value along with the data bar graphs. The WSS scores that were above the cut-off (CO) values are in red. CO: NA=no cut-off value assigned, thus excluded to distinguish a related strain pair.
DOI: 10.6084/m9.figshare.12110688
title: Table S8. Taxonomic profile. from An individualized mosaic of maternal microbial strains are transmitted to the infant gut microbial community

description: Microbial community composition was profiled at the species level for the post-FMT gnotobiotic mouse data set. The number shown in the table represents the “estimated number of reads from the clade” obtained using MetaPhlAn2 (version 2.7.62).
DOI: 10.6084/m9.figshare.12110691.v1
title: Table S1. Sequence reads information. from An individualized mosaic of maternal microbial strains are transmitted to the infant gut microbial community

description: The original sequence files were sequenced and deposited by (A) Shao et al., (accession number: ERP115334) and (B) Goltsman et al., (accession number: PRJNA288562). (C) Fecal samples from donors (<i>n</i>=5), post-FMT dams (BRD, <i>n</i>=5) and their F1 progenies (<i>n</i>=20) were collected, sequenced, and deposited to NCBI by this study. The table shows the sequence read count before and after the filtering processes. HuM=Humanized Mice.
DOI: 10.6084/m9.figshare.12110682
title: Table S4. WSS results on the Shao et al., study for caesarean section birth. from An individualized mosaic of maternal microbial strains are transmitted to the infant gut microbial community

description: All pairwise comparisons were performed between mother vs. infants (at 4-, 7-, 21-day, and infancy) after caesarean section birth. The resultant WSS scores are represented as a numerical value along with the data bar graphs. The WSS scores that were above the cut-off (CO) values are in red. NA=Sample was not available to run the analysis. NS=No WSS score observed. CO: NA=no cut-off value assigned, thus excluded to distinguish a related strain pair.
DOI: 10.6084/m9.figshare.12110685.v1
title: Table S6. WSS results between the human fecal sample and the gnotobiotic mouse. from An individualized mosaic of maternal microbial strains are transmitted to the infant gut microbial community

description: All pairwise comparisons were conducted between each donor feces vs. post-FMT dam (BRD) and their F1 progenies (F1-1, F1-2, F1-3, and F1-4). The resultant WSS scores are represented as a numerical value along with the data bar graphs. The WSS scores that were above the cut-off (CO) values are in red. CO: NA=no cut-off value assigned, thus excluded to distinguish a related strain pair.
DOI: 10.6084/m9.figshare.12110712.v2
title: Musical Chords and Image Descriptors from Film Fantasia (Disney)

description: FANTASIAThis repository contains the data related to image descriptors and sounds associated with a selection of frames of the film Fantasia, produced by Disney.AboutThis repository contains data used in a doctoral thesis for the automatic composition of descriptive music. The information is extracted from the fragment of The Nutcracker from film Fantasia (Disney, 1940) using SIFT and BoVW, color quantization and CENS. Data- <b>Attributes 1-50:</b> weighted vector of visual words.- <b>Attributes 51-59:</b> red, green and blue values for three RGB colors.- <b>Note1, note2 and note3</b>: MIDI notes related to each frame of the film.LicenseData is available under MIT License. To make use of the data the article must be cited.
DOI: 10.6084/m9.figshare.12110688.v1
title: Table S8. Taxonomic profile. from An individualized mosaic of maternal microbial strains are transmitted to the infant gut microbial community

description: Microbial community composition was profiled at the species level for the post-FMT gnotobiotic mouse data set. The number shown in the table represents the “estimated number of reads from the clade” obtained using MetaPhlAn2 (version 2.7.62).
DOI: 10.6084/m9.figshare.12110682.v1
title: Table S4. WSS results on the Shao et al., study for caesarean section birth. from An individualized mosaic of maternal microbial strains are transmitted to the infant gut microbial community

description: All pairwise comparisons were performed between mother vs. infants (at 4-, 7-, 21-day, and infancy) after caesarean section birth. The resultant WSS scores are represented as a numerical value along with the data bar graphs. The WSS scores that were above the cut-off (CO) values are in red. NA=Sample was not available to run the analysis. NS=No WSS score observed. CO: NA=no cut-off value assigned, thus excluded to distinguish a related strain pair.
DOI: 10.6084/m9.figshare.12110712.v1
title: Image and Sound Data from Film Fantasia (Disney)

description: FANTASIAThis repository contains the data related to image descriptors and sounds associated with a selection of frames of the film Fantasia, produced by Disney.AboutThis repository contains data used in a doctoral thesis for the automatic composition of descriptive music. The information is extracted from the fragment of The Nutcracker from film Fantasia (Disney, 1940) using SIFT and BoVW, color quantization and CENS. Data- <b>Attributes 1-50:</b> vector of visual words.- <b>Attributes 51-59:</b> red, green and blue values for three RGB colors.- <b>Note1, note2 and note3</b>: MIDI notes related to each frame of the film.LicenseData is available under MIT License. To make use of the data the article must be cited.
DOI: 10.6084/m9.figshare.12110679
title: Table S7. WSS results between post-FMT gnotobiotic mouse. from An individualized mosaic of maternal microbial strains are transmitted to the infant gut microbial community

description: All pairwise comparisons were conducted between each post-FMT gnotobiotic dam (BRD) vs. their F1 progenies (F1-1, F1-2, F1-3, and F1-4). The resultant WSS scores are represented as a numerical value along with the data bar graphs. The WSS scores that were above the cut-off (CO) values are in red. CO: NA=no cut-off value assigned, thus excluded to distinguish a related strain pair.
DOI: 10.6084/m9.figshare.12110733.v2
title: Raw data from farmers' survey under a research study titled "Implication of quality uncertainty on market exchange: The case of seed industry in Kilolo district, Tanzania".

description: Data from farmers' survey conducted in kilolo dsitrict council under the study " <b>Implication of quality uncertainty on market exchange: The case of seed industry in Kilolo district, Tanzania.</b><br><b><br></b><b><br></b><b><br></b><b><br></b><b><br></b><b><br></b><b><br></b>
DOI: 10.6084/m9.figshare.12110670
title: Table S3. WSS results on the Shao et al., study. from An individualized mosaic of maternal microbial strains are transmitted to the infant gut microbial community

description: All pairwise comparisons were performed between each mother's sample and her infant's samples (4-, 7-, 21-day, and infancy) following vaginal birth. The resultant WSS scores are represented as a numerical value along with the data bar graphs. The WSS scores that were above the cut-off (CO) values are in red. NA=Sample was not available to run the analysis. NS=No WSS score observed. CO: NA=no cut-off value assigned, thus excluded to distinguish a related strain pair.
DOI: 10.6084/m9.figshare.12110673
title: Table S2. Species identified in (A) Shao et al., (B) Goltsman et al., and (C) our FMT data sets using WSS analysis. from An individualized mosaic of maternal microbial strains are transmitted to the infant gut microbial community

description: Each table represents the number of paired samples that were able to provide a WSS score after filtering any low sequence coverage and low sequence depth samples against their given reference sequences for each species (see Materials and Methods for detailed information). Species that had a cut-off (CO) value were selected and used for comparative analysis. “CO: NA” indicates that there was no CO value assigned to this species, thus excluded to distinguish a related strain pair.
DOI: 10.6084/m9.figshare.12110676
title: Table S5. WSS results on the Goltsman et al., study. from An individualized mosaic of maternal microbial strains are transmitted to the infant gut microbial community

description: All pairwise comparisons were performed on the 1-100 days vs. 101-150 days; 1-100 days vs. 151-200 days; 1-100 days vs. 201-300 days samples. The resultant WSS scores are represented as a numerical value along with the data bar graphs. The WSS scores that were above the cut-off (CO) values are in red. NA=Sample was not available due to premature birth. NS=No WSS score observed. CO: NA=no cut-off value assigned, thus excluded to distinguish a related strain pair.
DOI: 10.6084/m9.figshare.12110679.v1
title: Table S7. WSS results between post-FMT gnotobiotic mouse. from An individualized mosaic of maternal microbial strains are transmitted to the infant gut microbial community

description: All pairwise comparisons were conducted between each post-FMT gnotobiotic dam (BRD) vs. their F1 progenies (F1-1, F1-2, F1-3, and F1-4). The resultant WSS scores are represented as a numerical value along with the data bar graphs. The WSS scores that were above the cut-off (CO) values are in red. CO: NA=no cut-off value assigned, thus excluded to distinguish a related strain pair.
DOI: 10.6084/m9.figshare.12110733.v4
title: "Implication of quality uncertainty on market exchange: The case of seed industry in Kilolo district, Tanzania".

description: Data from farmers' survey conducted in kilolo dsitrict council under the study " <b>Implication of quality uncertainty on market exchange: The case of seed industry in Kilolo district, Tanzania.</b><br><b><br></b><b><br></b><b><br></b><b><br></b><b><br></b><b><br></b><b><br></b>