cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8435192
title: Assessing Computational Notebook Understandability through Code Metrics Analysis

description: Computational notebooks have become the primary coding environment for data scientists. Despite their popularity, research on the code quality of these notebooks is still in its infancy, and the code shared in these notebooks is often of poor quality. Considering the importance of maintenance and reusability, it is crucial to pay attention to the comprehension of the notebook code and identify the notebook metrics that play a significant role in their comprehension. The level of code comprehension is a qualitative variable closely associated with the user's opinion about the code. Previous studies have typically employed two approaches to measure it. One approach involves using limited questionnaire methods to review a small number of code pieces. Another approach relies solely on metadata, such as the number of likes and user votes for a project in the software repository. In our approach, we enhanced the measurement of the understandability level of notebook code by leveraging user comments within a software repository. As a case study, we started with 248,761 Kaggle Jupyter notebooks introduced in previous studies and their relevant metadata. To identify user comments associated with code comprehension within the notebooks, we utilized a fine-tuned DistillBERT transformer. We established a \emph{user comment based criterion} for measuring code understandability by considering the number of code understandability-related comments, the upvotes on those comments, the total views of the notebook, and the total upvotes received by the notebook. This criterion has proven to be more effective than alternative methods, making it the ground truth for evaluating the code comprehension of our notebook set. In addition, we collected a total of 34 metrics for 10,857 notebooks, categorized as script-based and notebook-based metrics. These metrics were utilized as features in our dataset. Using the Random Forest classifier, our predictive model achieved 85% accuracy in predicting code comprehension levels in computational notebooks, identifying developer expertise and markdown-based metrics as key factors.
DOI: 10.5281/zenodo.8435191
title: Assessing Computational Notebook Understandability through Code Metrics Analysis

description: Computational notebooks have become the primary coding environment for data scientists. Despite their popularity, research on the code quality of these notebooks is still in its infancy, and the code shared in these notebooks is often of poor quality. Considering the importance of maintenance and reusability, it is crucial to pay attention to the comprehension of the notebook code and identify the notebook metrics that play a significant role in their comprehension. The level of code comprehension is a qualitative variable closely associated with the user's opinion about the code. Previous studies have typically employed two approaches to measure it. One approach involves using limited questionnaire methods to review a small number of code pieces. Another approach relies solely on metadata, such as the number of likes and user votes for a project in the software repository. In our approach, we enhanced the measurement of the understandability level of notebook code by leveraging user comments within a software repository. As a case study, we started with 248,761 Kaggle Jupyter notebooks introduced in previous studies and their relevant metadata. To identify user comments associated with code comprehension within the notebooks, we utilized a fine-tuned DistillBERT transformer. We established a \emph{user comment based criterion} for measuring code understandability by considering the number of code understandability-related comments, the upvotes on those comments, the total views of the notebook, and the total upvotes received by the notebook. This criterion has proven to be more effective than alternative methods, making it the ground truth for evaluating the code comprehension of our notebook set. In addition, we collected a total of 34 metrics for 10,857 notebooks, categorized as script-based and notebook-based metrics. These metrics were utilized as features in our dataset. Using the Random Forest classifier, our predictive model achieved 85% accuracy in predicting code comprehension levels in computational notebooks, identifying developer expertise and markdown-based metrics as key factors.
DOI: 10.5281/zenodo.6778581
title: Austrian Science Fund (FWF) Open Access Compliance Monitoring 2021

description: <strong>I. Executive summary</strong> The Austrian Science Fund (FWF), which is Austria's main funding organisation for basic research, encourages and helps all project leaders and project staff members to make their peer-reviewed research results freely available on the Internet. Any exceptions must be clearly indicated and justified. For projects that started after 1 January 2015, open access has been compulsory for all peer-reviewed publications. All principal investigators in FWF-funded projects are obliged to submit a final report within four months of completing their projects. In 2021, a total of 584 final reports were submitted to the FWF, 48 of which could not report any publications so far. The publications and other data mentioned in those reports are archived and analysed by the FWF. This report examines the state of compliance with open access requirements for peer-reviewed publications on the basis of final project reports submitted in the year 2021. Main findings: -A total of 7,025 publications were listed in the final project reports submitted in 2021. -Of those publications, 5,735 were conclusively identified as peer-reviewed. -Regarding compliance with the FWF's Open Access Policy, the analysis shows that 82% of the peer-reviewed publications listed in the final project reports submitted in 2021 were openly accessible (2015: 83%, 2016: 92%, 2017: 90%, 2018: 92%, 2019: 89%, 2020: 84%). -The most frequently chosen option was hybrid open access (39%). The share of gold open access was 23%, the share of green open access 20%, and no open access 18%. -The majority of peer-reviewed publications submitted were journal articles (85%), 86% of which were openly accessible. -The lowest rate of compliance with the FWF's Open Access Policy could be found in editions, contributions to edited volumes, and monographs (50%). -The absolute number of publications listed in final reports in 2021 included 403 publications that were mentioned several times in different projects; however, those repetitions did not ultimately affect the relative share of open access publications (81%). II. Bias Most of the publications were submitted to the FWF via a research documentation system (provided by ©Researchfish), in which FWF-funded researchers are able to enter and update their research data on an ongoing basis. The last check of the open access status was performed in March 2022. In some cases, the embargo period may have already expired, and publications labelled ‘closed’ in the FWF’s database may now be accessible through green open access. Whenever the status ‘peer-reviewed’ could not be clearly identified according to the FWF’s guidelines, the publications were classified as non-peer reviewed. Openly available non-peer reviewed publications were entered as 'openly available’.
DOI: 10.5281/zenodo.6778580
title: Austrian Science Fund (FWF) Open Access Compliance Monitoring 2021

description: <strong>I. Executive summary</strong> The Austrian Science Fund (FWF), which is Austria's main funding organisation for basic research, encourages and helps all project leaders and project staff members to make their peer-reviewed research results freely available on the Internet. Any exceptions must be clearly indicated and justified. For projects that started after 1 January 2015, open access has been compulsory for all peer-reviewed publications. All principal investigators in FWF-funded projects are obliged to submit a final report within four months of completing their projects. In 2021, a total of 584 final reports were submitted to the FWF, 48 of which could not report any publications so far. The publications and other data mentioned in those reports are archived and analysed by the FWF. This report examines the state of compliance with open access requirements for peer-reviewed publications on the basis of final project reports submitted in the year 2021. Main findings: -A total of 7,025 publications were listed in the final project reports submitted in 2021. -Of those publications, 5,735 were conclusively identified as peer-reviewed. -Regarding compliance with the FWF's Open Access Policy, the analysis shows that 82% of the peer-reviewed publications listed in the final project reports submitted in 2021 were openly accessible (2015: 83%, 2016: 92%, 2017: 90%, 2018: 92%, 2019: 89%, 2020: 84%). -The most frequently chosen option was hybrid open access (39%). The share of gold open access was 23%, the share of green open access 20%, and no open access 18%. -The majority of peer-reviewed publications submitted were journal articles (85%), 86% of which were openly accessible. -The lowest rate of compliance with the FWF's Open Access Policy could be found in editions, contributions to edited volumes, and monographs (50%). -The absolute number of publications listed in final reports in 2021 included 403 publications that were mentioned several times in different projects; however, those repetitions did not ultimately affect the relative share of open access publications (81%). II. Bias Most of the publications were submitted to the FWF via a research documentation system (provided by ©Researchfish), in which FWF-funded researchers are able to enter and update their research data on an ongoing basis. The last check of the open access status was performed in March 2022. In some cases, the embargo period may have already expired, and publications labelled ‘closed’ in the FWF’s database may now be accessible through green open access. Whenever the status ‘peer-reviewed’ could not be clearly identified according to the FWF’s guidelines, the publications were classified as non-peer reviewed. Openly available non-peer reviewed publications were entered as 'openly available’.
DOI: 10.6084/m9.figshare.21685496
title: Glycerin-based dispensers of fir oil reduce behavioral response of Asian citrus psyllid, Diaphorina citri, to host plant odors

description: The following datasets correspond to figures in the publication: Olfactometer (6) - Figure 1 Cage_TX_Adult ACP - Figure 2 Residential_AdultACP - Figure 3 Field_DensityDeployment_TX -Figure 4 Field_Density_TX - Figure 4 Field_DensityDeployment_CA - Figure 5 Gravimetric_TX - Figure 6
DOI: 10.6084/m9.figshare.21685496.v1
title: Glycerin-based dispensers of fir oil reduce behavioral response of Asian citrus psyllid, Diaphorina citri, to host plant odors

description: The following datasets correspond to figures in the publication: Olfactometer (6) - Figure 1 Cage_TX_Adult ACP - Figure 2 Residential_AdultACP - Figure 3 Field_DensityDeployment_TX -Figure 4 Field_Density_TX - Figure 4 Field_DensityDeployment_CA - Figure 5 Gravimetric_TX - Figure 6
DOI: 10.6084/m9.figshare.21685496.v2
title: Glycerin-based dispensers of fir oil reduce behavioral response of Asian citrus psyllid, Diaphorina citri, to host plant odors

description: The following datasets correspond to figures in the publication: Olfactometer (6) - Figure 1 Cage_TX_Adult ACP - Figure 2 Residential_AdultACP - Figure 3 Field_DensityDeployment_TX -Figure 4 Field_Density_TX - Figure 4 Field_DensityDeployment_CA - Figure 5 Gravimetric_TX - Figure 6
DOI: 10.5287/ora-j5mm7oj2g
title: Natural language use and bilingual interference: Verbal complementation patterns in post-classical Greek

description: 2022. Natural language use and bilingual interference: Verbal complementation patterns in post-classical Greek. In Michele Bianchoni, Martha Campano, Domenica Romangno & Francesco Rovai (eds.), Ancient Indo-European languages between linguistics and philology: Contact, variation, and reconstruction, 166–195. Leiden; Boston: Brill. https://brill.com/view/book/9789004508828/BP000007.xml [dataset the chapter is based on]
DOI: 10.57745/qmwnzh
title: Aleurocanthus_spiniferus_Bernis19VI2023_JSTR13017_06.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): eggs. Photo INRAE / Jean-Claude Streito
DOI: 10.57745/5oo7w8
title: Aleurocanthus_spiniferus_Bernis19VI2023_JSTR13017_09b.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): eggs. Photo INRAE / Jean-Claude Streito
DOI: 10.57745/hgxboc
title: Aleurocanthus_spiniferus_Bernis18-19VI2023_JSTR13005_07.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): first immature stage. Photo INRAE / Jean-Claude Streito
DOI: 10.57745/knkz93
title: Aleurocanthus_spiniferus_Bernis18-19VI2023_JSTR13005_06.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): first immature stage. Photo INRAE / Jean-Claude Streito
DOI: 10.57745/hbundi
title: Aleurocanthus_spiniferus_Bernis18-19VI2023_JSTR13015_05.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): first immature stage. Photo INRAE / Jean-Claude Streito
DOI: 10.57745/pvsnkk
title: Aleurocanthus_spiniferus_Bernis18-19VI2023_JSTR13015_07.jpg

description: Aleurocanthus spiniferus from French outbreak: second immature stage (2023). Photo INRAE / Jean-Claude Streito
DOI: 10.57745/g2bu6l
title: Aleurocanthus_spiniferus_Bernis18-19VI2023_JSTR13005_11.jpg

description: Aleurocanthus spiniferus from French outbreak: second immature stage (2023). Photo INRAE / Jean-Claude Streito
DOI: 10.57745/gz749n
title: Aleurocanthus_spiniferus_Bernis18-19VI2023_JSTR13005_13b.jpg

description: Aleurocanthus spiniferus from French outbreak: second immature stage (2023). Photo INRAE / Jean-Claude Streito
DOI: 10.57745/dlhknw
title: Aleurocanthus_spiniferus_Bernis19VI2023_JSTR13017_16b.jpg

description: Aleurocanthus spiniferus from French outbreak: second immature stage (2023). Photo INRAE / Jean-Claude Streito
DOI: 10.57745/f7m7tl
title: Aleurocanthus_spiniferus_Bernis18-19VI2023_JSTR13005_05b.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): first and second immature stages. Photo INRAE / Jean-Claude Streito
DOI: 10.57745/ruzhmz
title: Aleurocanthus_spiniferus_Bernis19VI2023_JSTR13017_02.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): fourth immature stage (puparium) and eggs. Photo INRAE / Jean-Claude Streito
DOI: 10.57745/wgvwtn
title: Aleurocanthus_spiniferus_Bernis18-19VI2023_JSTR13005_15.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): third and fourth (puparium) immature stages. Photo INRAE / Jean-Claude Streito
DOI: 10.57745/tijqjl
title: Aleurocanthus_spiniferus_Bernis19VI2023_JSTR13017_04.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): fourth immature stage (puparium) and eggs. Photo INRAE / Jean-Claude Streito
DOI: 10.57745/2kw5q6
title: Aleurocanthus_spiniferus_Bernis19VI2023_JSTR13017_11.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): fourth immature stage (puparium) and eggs. Photo INRAE / Jean-Claude Streito
DOI: 10.57745/5n5hqu
title: Aleurocanthus_spiniferus_Bernis19VI2023_JSTR13017_13b.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): fourth immature stage (puparium), detail of the vasiform orifice. Photo INRAE / Jean-Claude Streito
DOI: 10.57745/hhvkap
title: Aleurocanthus_spiniferus_Bernis19VI2023_JSTR13011_0101_01b.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): fourth immature stage (puparium) and adult. Photo INRAE / Jean-Claude Streito
DOI: 10.57745/w7nkfz
title: Aleurocanthus_spiniferus_Bernis19VI2023_JSTR13017_14.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): fourth immature stage (puparium), detail of the vasiform orifice. Photo INRAE / Jean-Claude Streito
DOI: 10.57745/alg85f
title: Aleurocanthus_spiniferus_Bernis18VI2023_JSTR13007_05b.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): adult male. Photo INRAE / Jean-Claude Streito
DOI: 10.57745/keamo6
title: Aleurocanthus_spiniferus_Bernis18VI2023_JSTR13007_06b.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): adult male, detail of the last abdominal segments. Photo INRAE / Jean-Claude Streito
DOI: 10.57745/0931hk
title: Aleurocanthus_spiniferus_Bernis18-19VI2023_JSTR13005_02.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): small colony. Photo INRAE / Jean-Claude Streito
DOI: 10.57745/r8aki9
title: Aleurocanthus_spiniferus_Bernis18-19VI2023_JSTR13015_06.jpg

description: Aleurocanthus spiniferus from French outbreak (2023): first immature stage. Photo INRAE / Jean-Claude Streito
DOI: 10.5281/zenodo.8427514
title: Dataset_Urinary sC5b-9 is independently associated with kidney function decline in diabetic kidney disease.

description: The dataset is provided with all variables studied and described in the research letter. In particular, clinical, demographic, 24h blood pressure and urinary complement levels are listed. A stata do file describes the statistical analysis of the data set.
DOI: 10.5281/zenodo.8427513
title: Dataset_Urinary sC5b-9 is independently associated with kidney function decline in diabetic kidney disease.

description: The dataset is provided with all variables studied and described in the research letter. In particular, clinical, demographic, 24h blood pressure and urinary complement levels are listed. A stata do file describes the statistical analysis of the data set.
DOI: 10.5281/zenodo.8435160
title: Raw data for publication: Cao et al. 2023. GCB-Bioenergy (accepted for publication).

description: Raw data for publication: Viet Dang Cao, Baskaran Kannan, Guangbin Luo, Hui Liu, John Shanklin, and Fredy Altpeter. 2023. Triacylglycerol, total fatty acid and biomass accumulation of metabolically engineered energycane grown under field conditions. GCB-Bioenergy (accepted for publication).
DOI: 10.5281/zenodo.8435159
title: Raw data for publication: Cao et al. 2023. GCB-Bioenergy (accepted for publication).

description: Raw data for publication: Viet Dang Cao, Baskaran Kannan, Guangbin Luo, Hui Liu, John Shanklin, and Fredy Altpeter. 2023. Triacylglycerol, total fatty acid and biomass accumulation of metabolically engineered energycane grown under field conditions. GCB-Bioenergy (accepted for publication).
DOI: 10.6084/m9.figshare.24298306
title: Metagenomic analysis of giant viruses from a pelagic deep sea incubation experiment, supplementary material

description: Due to the large amount of data generated in this metagenomic study of deep sea giant viruses, these tables could not be fitted to printable sizes, but are instead available here.
DOI: 10.6084/m9.figshare.24298306.v2
title: Metagenomic analysis of giant viruses from a pelagic deep sea incubation experiment, supplementary material

description: Due to the large amount of data generated in this metagenomic study of deep sea giant viruses, these tables could not be fitted to printable sizes, but are instead available here.
DOI: 10.6084/m9.figshare.24298306.v1
title: Table_S3_binning_method_results

description: Summary statistics for the extracted giant virus bins including the five putative MAGs: genome size, N50 value, protein counts, and other parameters used to choose a bin for further analysis from those created by the multiple binning methods.
DOI: 10.15454/wrdbew/2o0rut
title: validation_rawdata.tab

description: :unav
DOI: 10.15454/wrdbew/f4x1g3
title: cavitron_cavi1000.tab

description: This file contains the raw data used for performing the vulnerability curves of the figure 8 of the manuscript.
DOI: 10.5519/qd.nz6e1c9g
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (6682 records)
DOI: 10.5281/zenodo.8435273
title: Gkoutselis et al. 2023 COMMENV

description: This repository includes files related to the publication "<em>Fungal plastiphily and its link to generic virulence traits makes environmental microplastics a global health factor" </em> <em>Name of publication might change during the editoring process</em>
description: This study was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – SFB 1357-39197756; subproject C04
DOI: 10.5281/zenodo.8435272
title: Gkoutselis et al. 2023 COMMENV

description: This repository includes files related to the publication "<em>Fungal plastiphily and its link to generic virulence traits makes environmental microplastics a global health factor" </em> <em>Name of publication might change during the editoring process</em>
description: This study was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – SFB 1357-39197756; subproject C04
DOI: 10.5281/zenodo.8435285
title: res-e targets

description: Dataset containing information regarding variables used to analyse some drivers of meeting 2030 renewable energy targets
DOI: 10.5281/zenodo.8435284
title: res-e targets

description: Dataset containing information regarding variables used to analyse some drivers of meeting 2030 renewable energy targets
DOI: 10.6084/m9.figshare.23282771
title: traj_shenzhen_20210416.csvx

description: Vehicle trajectories in Shenzhen city on April 16, 2021
DOI: 10.6084/m9.figshare.23282771.v1
title: traj_shenzhen_20210416.csvx

description: Vehicle trajectories in Shenzhen city on April 16, 2021
DOI: 10.6084/m9.figshare.23282783
title: edge_shenzhen.csv

description: The edges of road network graph in Shenzhen city
DOI: 10.6084/m9.figshare.23282783.v1
title: edge_shenzhen.csv

description: The edges of road network graph in Shenzhen city
DOI: 10.6084/m9.figshare.23282792
title: traj_shenzhen_20201104.csv

description: Vehicle trajectories in Shenzhen city on November 4, 2020
DOI: 10.6084/m9.figshare.23282786
title: traj_shenzhen_20210824.csv

description: Vehicle trajectories in Shenzhen city on August 24, 2021
DOI: 10.6084/m9.figshare.23282786.v1
title: traj_shenzhen_20210824.csv

description: Vehicle trajectories in Shenzhen city on August 24, 2021
DOI: 10.6084/m9.figshare.23282792.v1
title: traj_shenzhen_20201104.csv

description: Vehicle trajectories in Shenzhen city on November 4, 2020
DOI: 10.6084/m9.figshare.23925291.v7
title: Dataset Artificial warming decreases heterotroph densities and trophic transfer efficiency

description: This file holds the data and scripts used in the article "Artificial warming decreases heterotroph densities and trophic transfer efficiency".Data are available in files whose name begins with the prefix "df". The variables names "date" and "date_c" represent the sampling date in discrete or continue value, respectively. "mesocosm_ID" is the identity of the mesocosm. "fish" represent the fish treatment (NF for No Fish, LB for Large-bodied fish and SB for Small-bodied fish). "warming" is the temperature treatment (NW for no warming, W for warming). "tmean15" is the mean temperature of the 15 days prior to the sampling date. "compartment", "class", "order" and "taxa" represent the taxonomy of the organisms. "N_l" is the density per liter. "C_mug_l" is the carbon biomass in microgram per liter. "S" and "H" are the species richness and the Shannon diversity index, respectively. "ZP" is the zooplankton:phytoplankton biomass ratio. The variables in df_bss.csv file are described in the main text of the article.Files with a numerical prefix are the scripts used for the statistical analyzes (multivariate analyzes, ecological index, community density and biomass, Predator Prey Biomass Ratio and Biomass Size Spectra).