cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/4dcgs8mvzx.2
title: Efficient development of fully human monoclonal antibodies by rapid mRNA immunization of humanized mice followed by single B cell sequencing

description: As a clinical vaccine, lipid nanoparticle (LNP) mRNA demonstrated potent and broad antibody responses, leading to speculation about its potential for antibody discovery. Here, we developed RAMIHM, a highly efficient strategy for developing fully human monoclonal antibodies that employs rapid mRNA immunization of humanized mice followed by single B cell sequencing (scBCR-seq). We immunized humanized transgenic mice with RAMIHM and generated 15 top-ranked clones from peripheral blood, plasma B, and memory B cell populations, demonstrating a high rate of antigen-specificity (93.3%). Two Omicron-specific neutralizing antibodies with high potent and one broad-spectrum neutralizing antibody were discovered. Furthermore, we extended the application of RAMIHM to cancer immunotherapy targets, including a single transmembrane protein CD22 and a multi-transmembrane GPCR target, GPRC5D, which is difficult for traditional protein immunization methods. RAMIHM-scBCR-seq is a broadly applicable platform for the rapid and efficient development of fully human monoclonal antibodies against an assortment of targets.
DOI: 10.17632/4dcgs8mvzx.3
title: RAMIHM generates fully human monoclonal antibodies by rapid mRNA immunization of humanized mice and BCR-seq

description: As a clinical vaccine, lipid nanoparticle (LNP) mRNA demonstrated potent and broad antibody responses, leading to speculation about its potential for antibody discovery. Here, we developed RAMIHM, a highly efficient strategy for developing fully human monoclonal antibodies that employs rapid mRNA immunization of humanized mice followed by single B cell sequencing (scBCR-seq). We immunized humanized transgenic mice with RAMIHM and generated 15 top-ranked clones from peripheral blood, plasma B, and memory B cell populations, demonstrating a high rate of antigen-specificity (93.3%). Two Omicron-specific neutralizing antibodies with high potent and one broad-spectrum neutralizing antibody were discovered. Furthermore, we extended the application of RAMIHM to cancer immunotherapy targets, including a single transmembrane protein CD22 and a multi-transmembrane GPCR target, GPRC5D, which is difficult for traditional protein immunization methods. RAMIHM-scBCR-seq is a broadly applicable platform for the rapid and efficient development of fully human monoclonal antibodies against an assortment of targets.
DOI: 10.17632/ys24bwfzks.1
title: TIFF images from X-ray scan of head of Ariopsis felis (BMNH 1948.8.6.195)

description: TIFF images from X-ray scan of head of Ariopsis felis (BMNH 1948.8.6.195)
DOI: 10.17632/msmdg75fpp.1
title: TIFF images from X-ray scan of head of Ariopsis felis (BMNH 1983.7.6.11)

description: TIFF images from X-ray scan of head of Ariopsis felis (BMNH 1983.7.6.11)
DOI: 10.17632/gbzy34knkj.1
title: TIFF images from X-ray scan of head of Ariopsis felis (BMNH 1983.7.6.12)

description: TIFF images from X-ray scan of head of Ariopsis felis (BMNH 1983.7.6.12)
DOI: 10.17632/fpfjcbgsb2.1
title: Mar3450 integrated data

description: Mar3450 data integrated to 1D diffraction patterns for the welds with 0, 0.5 and 1 mm laser beam offset to Ti plate
DOI: 10.17632/fpfjcbgsb2.2
title: Mar3450 integrated data

description: Mar3450 data integrated to 1D diffraction patterns for the welds with 0, 0.5 and 1 mm laser beam offset to Ti plate
DOI: 10.17632/z6z4dsfdk6.1
title: TIFF images from X-ray scan of head of Ariopsis felis (BMNH 1948.8.6.196)

description: TIFF images from X-ray scan of head of Ariopsis felis (BMNH 1948.8.6.196)
DOI: 10.17632/jky8gfjx84.1
title: SUPPLEMENTARY MATERIALS: A preclinical trial evaluating the efficacy of a topical formulation containing adipose-derived stem cell exosomes for the treatment of dupilumab-related facial redness in patients with atopic dermatitis

description: Supplemenatry materials for 'A preclinical trial evaluating the efficacy of a topical formulation containing adipose-derived stem cell exosomes for the treatment of dupilumab-related facial redness in patients with atopic dermatitis'
DOI: 10.17632/p9cr67s6jp.1
title: Feed Bunk Score Images - FBSI

description: The Feed Bunk Score Images - FBSI dataset is a set of images of leftover rations on feed bunks in feedlot cattle. These images are used for reading and classification of the bunk score. This technique is a visual assessment and consists of analyzing the amount of feed left in the bunk over the last 24 hours. For each volume of leftovers, specific scores are assigned suggesting adjustments in the amount of feed to be provided during the day, according to the needs of the animals in each herd. The dataset is composed of 1511 images of 6 different scores. These images represent different diet compositions according to the farms. Furthermore, in this dataset, the feed bunks differ in terms of their material and model. Most feed bunks are made of cement, but some are made of wood with the background covered in rubber or plastic material.
DOI: 10.17632/53grw3ys6y.1
title: rMSIfragment datasets G1-G15

description: Mass Spectrometry Imaging datasets used as validation of the functionality of rMSIfragment (https://github.com/gbaquer/rMSIfragment). Referred to as Dataset G1-15 in the accompanying publication. Datasets G1-G8 were acquired in positive mode (pks_pos.zip) and Datasets G9-G15 were acquired in negative mode (pks_neg.zip).

Metadata
Homo sapiens sapiens / Nevus
MBT (pks_neg) and DAN (pks_neg)
Ace Glass 8023 Glass Sublimator, 10 min
25 um step size
480-1200 m/z range
ThermoFisher™ LTQ-Orbitrap XL
DOI: 10.17632/bvbkj7kh7x.1
title: AFM

description: dataset for LBYPH05 AFM Analysis
DOI: 10.17632/d2cvgfs65p.1
title: Italy Regions 2007 2018

description: Data on Italian regions from 2007 to 2018 (macroeconomic data of regions, debt (financial) data, accounting data (expenditures and revenues), characteristics of regions' presidents)
DOI: 10.17632/d2cvgfs65p.2
title: Italy Regions 2007 2020

description: Data on Italian regions from 2007 to 2020 (macroeconomic data of regions, debt (financial) data, accounting data (expenditures and revenues), characteristics of regions' presidents)
DOI: 10.17632/cxmstw5pr6.1
title: Elevated PAF1-RAD52 axis confers chemoresistance to human cancers

description: Mass-spec
DOI: 10.5281/zenodo.7445625
title: Dataset for "Energization of Cold Protons and Helium Ions by EMIC Waves in the Inner Magnetosphere: Hybrid Simulations"

description: * Reduced datasets for figures in the manuscript. * Code for producing the simulation data.
DOI: 10.17632/5hgx46mz46.1
title: Brachyrhaphis roseni Personality Data

description: Raw data on individual variation in boldness repeatability in Brachyrhaphis roseni. The data shows the time it took to emerge from a novel environment in an individual male or female B. roseni in seconds across three trials. Each individual underwent three trials and the time it took to emerge was recorded in seconds using a camera. Each individual was given an identification number, for males BM# and for females BF#. The seconds it took to emerge from each trial is measuring boldness behavior. A maximum time of 10 minutes was given to each individual during a trial and an individual was given a maximum score of 10 minutes or 600 seconds if failed to emerge within the 10 minutes.
DOI: 10.5281/zenodo.7445624
title: Dataset for "Energization of Cold Protons and Helium Ions by EMIC Waves in the Inner Magnetosphere: Hybrid Simulations"

description: * Reduced datasets for figures in the manuscript. * Code for producing the simulation data.
DOI: 10.17632/bgv6gs9dvr.1
title: Data for: The Functional Nasal Anatomy of the Pike, Esox lucius L.

description: Set of 1772 TIFF images from micro-CT scan of head of adult pike, Esox lucius (specimen from Natural History Museum, London, UK, catalogue number BMNH 1986.5.20.4). Full details of scan given in manuscript
DOI: 10.17632/g5vx38jh5j.1
title: Data for: The Functional Nasal Anatomy of the Pike, Esox lucius L.

description: Set of 1807 TIFF images from micro-CT scan of head of juvenile pike, Esox lucius (specimen from Natural History Museum, London, UK, catalogue number BMNH 1963.4.26.2). Full details of scan given in manuscript
DOI: 10.17632/n2dgbzkcsb.1
title: Imposter Syndrome in Dermatology

description: Impostor syndrome is characterized by chronic feelings of self-doubt and fear of being discovered as an intellectual fraud. Previous research has shown most dermatology residents suffer from imposter syndrome. Outside of dermatology, research demonstrates resident trainees to higher rates of imposter syndrome than their faculty counterparts. This cross-sectional survey study sought to explore the prevalence of imposter syndrome within dermatology, both among residents and attendings. A survey consisting of 12 questions was sent to the Association of Professors of Dermatology listserv. The members were also told to distribute this survey to their residents. The majority (81.9%) of respondents reported that they did not feel comfortable calling themselves a dermatologist until after their third year of residency. There was no significant different in rates of imposter syndrome between males and females. Current career level and self-perceived competitiveness of application when applying to dermatology were significant determinants of responses. Inadequate unsupervised practice prior to residency completion was reported as a major contributor to imposter syndrome. Limitations include generalizability and the cross-sectional nature of the study. The results of this survey may serve as a guide to academic dermatology in creating meaningful health and wellness activities that will help dermatologist overcome imposter syndrome.
DOI: 10.17632/ppgn28nxkp.1
title: Protein interaction studies in human induced neurons indicate convergent biology underlying autism spectrum disorders

description: Raw images of all the western blots that have been cropped in the Main Figures (Figure 1,2,4,5,6) and Supplementary material. We also included raw images of the IP-MS samples (Figure S2), as well as of the forward and reverse IP-WBs (Figure S5,S6), which were not cropped in the manuscript, but annotated. Please refer to the Methods section of the manuscript for experimental details.
DOI: 10.17632/7d9czw39rh.1
title: Dataset of "Repair Bond Strength of Bioactive Resin Composite and Resin Modified Glass Ionomer Cement as Alternatives to Traditional Resin Composites to CAD-CAM Restoratives"

description: The study to which this dataset belongs investigated adhesion to Computer Aided Design-Computer Aided Manufacturing (CAD-CAM) restoratives when bioactive resin composite or resin modified glass ionomer cement were used as an alternative to the conventional resin composite.

To calculate the bond strength in megapascals, the given force values must be divided by the circular bond area with a diameter of 2.38 mm.
DOI: 10.17632/r395xfjkcf.1
title: I-V data for Study on the performance of CuBr2 doped Cs2AgBiBr6 perovskite solar cells with carbon electrode and without a hole-transporting layer

description: I-V data for 1 at.% CuBr2 doped PSC
DOI: 10.17632/hv4xjnzrnf.1
title: Data for: The Functional Nasal Anatomy of the Pike, Esox lucius L.

description: STL FILES
STLs for plastic models: 1. STL model of head of Esox lucius (juvenile); 2. STL model of head of Esox lucius (adult).
STLs for CFD: 1. Juvenile Esox lucius wild type STL model; 2. Adult Esox lucius wild type STL model; 3. Juvenile Esox lucius mutant STL model; 4. Adult Esox lucius mutant STL model.

Full details of STLs given in manuscript
DOI: 10.17632/pyfynr6kn8.1
title: The amphibian’s fauna of a West African forest relict near a hydroelectric Dam (Southwest of Côte d’Ivoire)

description: This study reports the amphibian’s fauna sampled from the Biodiversity Conservation Area of the hydroelectric dam of Soubré city (southwestern Côte d’Ivoire). This study aims to provide a better understanding of the diversity of amphibians in this relict forest of 200 ha, in order to assess the ecological health of this ecosystem for conservation and sustainable management perspectives. During dry season (from 26 February to 4 March 2018) and rainy season (from 17 to 23 June 2018), we recorded 14 species of anurans grouped into eight genera and six families. The study sites comprise an amphibian fauna consisting mainly of savannah specialists and degraded forest (64.28% of total species richness). Based on the IUCN Red List, all species recorded are of least concern. Also, these species are well distributed in the different regions of Côte d’Ivoire and Africa. Thus, it is necessary to monitor the ecology of the species and to protect subsequently the different habitats of this area.
DOI: 10.34740/kaggle/dsv/4730707
title: AutoXGB
DOI: 10.17632/5zng6khy9h.1
title: TP-NER: A named entity recognition dataset of target and precursor named entities for high-temperature steel

description: This dataset contains target and precursor-named entity data for high-temperature steel-related texts from published papers in IOB format. This dataset has been annotated and verified by domain experts. This dataset has 249304 rows and 3 columns. The sentence ID is in the first column, the tokens are in the second column, and the target or precursor tag is in the third column. This dataset contains data for five annotated documents among 25 documents.
DOI: 10.5281/zenodo.7445699
title: Smartphone osmTracker for Android survey in Villa Bolasco

description: Tracks and waypoints of surveying path in Villa Bolasco and elements of interest (benches and trees)
DOI: 10.6084/m9.figshare.21739292
title: Treefrog Colour Change Dataset

description: Dataset generated for treefrog colour change study
DOI: 10.6084/m9.figshare.21739292.v1
title: Treefrog Colour Change Dataset

description: Dataset generated for treefrog colour change study
DOI: 10.6084/m9.figshare.21731090.v1
title: Identification and Validation of Basement Membrane Related LncRNA Signatures as A Novel Prognostic Model for Hepatocellular Carcinoma

description: These data sets are used in the benchmark study presented in the paper "Identification and Validation of Basement Membrane Related LncRNA Signatures as A Novel Prognostic Model for Hepatocellular Carcinoma" by Huajian Gu.
DOI: 10.57744/ldldc762b3a1
title: TEST
DOI: 10.5281/zenodo.6513333
title: GRAND-SLAM analysis of mESCs treated with 4sU for 24h from Herzog et al., Nature Methods 2017 (https://doi.org/10.1038/nmeth.4435)

description: This is the processed SLAM-seq data from the 24h 4sU data set published in Herzog et al., Nature Methods 2017 (https://doi.org/10.1038/nmeth.4435). The zip file contains the full output from the processing pipeline (including the mapped reads, the scripts to run the pipeline and the output). The json file is required if you want to start from scratch. The file sars.tsv.gz is the GRAND-SLAM output table. <br> To generate the GRAND-SLAM output yourself, first prepare the mouse (ensembl v90). Then run: gedi -e Slam -double -reads slam_ameres_24h.cit -genomic m.ens90 -prefix grandslam_t15/24h -plot -progress To generate the cit file you have to modify the first lines in start.bash to match the paths on your file system, and then run it. You can also start from scratch (i.e., the json file): Prepare the mouse genome (ensembl v90) and the murine rRNA sequence<br> Run: gedi -e Pipeline -r parallel -j ameres_24h.json rnaseq_mapping.sh report.sh grandslam.sh Software versions: gedi toolkit 1.0.4<br> GRAND-SLAM 2.0.7<br> STAR version 2.5.3a
DOI: 10.5281/zenodo.6513332
title: GRAND-SLAM analysis of mESCs treated with 4sU for 24h from Herzog et al., Nature Methods 2017 (https://doi.org/10.1038/nmeth.4435)

description: This is the processed SLAM-seq data from the 24h 4sU data set published in Herzog et al., Nature Methods 2017 (https://doi.org/10.1038/nmeth.4435). The zip file contains the full output from the processing pipeline (including the mapped reads, the scripts to run the pipeline and the output). The json file is required if you want to start from scratch. The file sars.tsv.gz is the GRAND-SLAM output table. <br> To generate the GRAND-SLAM output yourself, first prepare the mouse (ensembl v90). Then run: gedi -e Slam -double -reads slam_ameres_24h.cit -genomic m.ens90 -prefix grandslam_t15/24h -plot -progress To generate the cit file you have to modify the first lines in start.bash to match the paths on your file system, and then run it. You can also start from scratch (i.e., the json file): Prepare the mouse genome (ensembl v90) and the murine rRNA sequence<br> Run: gedi -e Pipeline -r parallel -j ameres_24h.json rnaseq_mapping.sh report.sh grandslam.sh Software versions: gedi toolkit 1.0.4<br> GRAND-SLAM 2.0.7<br> STAR version 2.5.3a
DOI: 10.5281/zenodo.7445655
title: Database on soil properties of the CS1 Study case

description: Soil properties dataset of the CS1 Study Case corresponding to the article "The combination of crop diversification and no tillage enhances key 1 soil quality parameters related to soil functioning without compromising crop yields in a low-input rainfed almond orchard under semiarid Mediterranean conditions" by Almagro et al.
DOI: 10.5281/zenodo.7445656
title: Database on soil properties of the CS1 Study case

description: Soil properties dataset of the CS1 Study Case corresponding to the article "The combination of crop diversification and no tillage enhances key 1 soil quality parameters related to soil functioning without compromising crop yields in a low-input rainfed almond orchard under semiarid Mediterranean conditions" by Almagro et al.
DOI: 10.34740/kaggle/dsv/4282405
title: Performance vs. Predicted Performance
DOI: 10.22008/fk2/jmu6md
title: Deliverables for ESA PRODEX contract Seamless Integration of Sentinel-3 Albedos in a Weather-modelling System (SISAWS)

description: Deliverables for ESA PRODEX contract Seamless Integration of Sentinel-3 Albedos in a Weather-modelling System (SISAWS)
DOI: 10.22008/fk2/jmu6md/qpa00t
title: TN1 SISAWS Science Review (SR).pdf
DOI: 10.22008/fk2/fbs2zi/jpogx7
title: TN-2 SICE2 ATBD.pdf

description: :unav
DOI: 10.22008/fk2/fbs2zi
title: Algorithm Theoretical Basis Document for Sentinel-3 snow and ice (SICE) products, Version 5.1

description: Sentinel-3 snow and ice (SICE) products, Algorithm Theoretical Basis Document, Version 5.1, October 1, 2022
DOI: 10.5281/zenodo.7030280
title: Spectral Effects of Absorbing Aerosols on Backscattered UV Radiation

description: Satellite measurements of backscattered UV radiation are sensitive to the presence of UV-absorbing aerosols in the atmosphere. These measurements are commonly used for determining the concentration of atmospheric trace gases such as O<sub>3</sub>, SO<sub>2</sub>, and H<sub>2</sub>CO. The theoretical results in this dataset describe the effects of UV-absorbing mineral dust and carbonaceous smoke aerosols on these backscatter satellite measurements between 300-400 nm. The information provided is independent of any specific trace gas retrieval algorithm and does not require detailed a priori knowledge of aerosol and surface properties. The results are derived from the analysis of the radiative transfer model simulations performed with the optical property data used in the Ozone Monitoring Instrument (OMI) UV aerosol retrieval algorithm, OMAERUV. Results from this algorithm have been validated with Aerosol Robotic Network (AERONET) observations (Jethva & Torres, 2011; Torres et al., 2018). This dataset is associated with the following publication: Jethva, H., Haffner, D., Bhartia, P. K., & Torres, O. (2022). Estimating Spectral Effects of Absorbing Aerosols on Backscattered UV Radiation, Earth Space Sci., Accepted.
description: This dataset is a product of research funded by NASA's Science Mission Directorate, WBS 479717, Long Term Measurement of Ozone.
DOI: 10.6073/pasta/834c813f123c8faf3d59477e54bfc3ce
title: Three decades of limnological data from lakes in the Pocono Mountains region, Pennsylvania USA, 1988-2018

description: Three decades of limnological data have been collected from Lakes
  Lacawac, Giles, and Waynewood, located in the Pocono Mountains region
  of Pennsylvania, USA as a part of this ongoing data set. Giles is a
  clear-water, low dissolved organic matter oligotrophic lake in a
  largely protected watershed, Lacawac has higher dissolved organic
  matter concentrations and is a dystrophic brown-water system in a
  highly protected watershed within the Lacawac Sanctuary and Biological
  Field Station, and Waynewood is a more productive, eutrophic lake,
  with a larger watershed that is in mixed agricultural, forested, and
  residential use. One unique aspect of these data is that they comprise
  one of the largest and most complete data sets with measurements of
  underwater UV transparency available in the world. The data include a
  suite of 45 variables including physical, optical, and chemical
  characteristics of the lakes, with a focus on the optical
  characteristics. Data were collected on many of these variables at
  least once annually during the summer, often with much more frequent
  samples during the ice-free season, and for several years in the early
  1990s through the winter months. The following three files contain
  this data set, with the main data contained in PoconosLakeData.csv.
  SiteInformation.csv and Methods.csv support the main data file, with
  descriptions of the sampling sites and methods by which samples were
  processed, respectively. Also included are summary reports that
  provide an overview and characterize the three core PCLP (Pocono
  Comparative Lakes Program) lakes from1989-1993. The user is referred
  in particular to the 1995 summary report on all three lakes as a
  useful introduction to the three lakes. These files can be accessed
  through links provided under Journal Citations. These reports provide
  an overview of the lakes and detailed methodology. The 1995 summary
  report "Limnology of Lakes Lacawac, Giles, and Waynewood 1989-93:
  An Introduction to the Core Lakes of the Pocono Comparative Lakes
  Program" provides a comprehensive overview of lake and watershed
  characteristics, as well as physical, chemical, and biological (fish,
  zooplankton, and phytoplankton) conditions. Detailed sampling and
  analytical methodology, and an overview of fish populations in the
  three lakes are also available, as well as annual reports for each
  lake.
DOI: 10.5066/p91wbuyo
title: Threshold friction velocities for aeolian transport of river-sourced sand, with related moisture content, grain size, topographic, and wind data from Lees Ferry, Arizona

description: These data were compiled to investigate the control of drying on the aeolian transport of river-sourced sand. Objectives of our study were to to examine aeolian sediment transport during a five-day period of low steady river flow on a river sandbar and adjacent aeolian dunefield. These data represent the observed and theoretical threshold fiction velocities for aeolian sediment transport, as well as the grain size, sediment moisture content, surface roughness and other characteristics of the sandbar and sand dune surfaces. These data were collected at a sandbar and aeolian sand dune along the Colorado River approximately 19 km downstream from Glen Canyon Dam at Lees Ferry, Arizona, USA from March 15 to 20, 2021. These data were collected by field observations by the U.S. Geological Survey, Grand Canyon Monitoring and Research Center. These data can be used to investigate the potential for aeolian transport of river-sourced sand.