cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.rn826t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alca cirrhata Pallas, 1769",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024737-250127130748423/datasets/export for details.
DOI: 10.15468/dl.mwfmyb
title: Occurrence Download

description: A dataset containing 128 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gastrolobium nervosum (Meisn.) G.Chandler & Crisp"
 ]
}

 The dataset includes 128 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024738-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14854604
title: Upper Citarum Watershed SWAT+ Dataset and Model

description: SWAT+ hydrological dataset and model for the Upper Citarum Watershed, specifically, the Saguling Watershed. 

This dataset is designed to support hydrological modeling in the Upper Citarum Watershed (Rohmat et al., 2022), specifically the Saguling Watershed, which faces significant challenges related to water resource mismanagement and natural hazards such as floods and droughts.

The dataset includes:



Rainfall data in TXT format, derived from the GSMaP MVK v8 (Kubota et al., 2020) rainfall dataset and bias-corrected using data from 27 ground stations in the region.

Meteorological data, including station locations, humidity, solar radiation, temperature, and wind speed.

Geospatial datasets for the Saguling Watershed, including a digital elevation model (DEM), land cover, and soil data.

SWAT+ model files (Bieger et al., 2017) incorporating the GSMaP MVK v8 rainfall scenario.


The simulation timeframe spans from 2001 to 2023.
DOI: 10.5281/zenodo.14854605
title: Upper Citarum Watershed SWAT+ Dataset and Model

description: SWAT+ hydrological dataset and model for the Upper Citarum Watershed, specifically, the Saguling Watershed. 

This dataset is designed to support hydrological modeling in the Upper Citarum Watershed (Rohmat et al., 2022), specifically the Saguling Watershed, which faces significant challenges related to water resource mismanagement and natural hazards such as floods and droughts.

The dataset includes:



Rainfall data in TXT format, derived from the GSMaP MVK v8 (Kubota et al., 2020) rainfall dataset and bias-corrected using data from 27 ground stations in the region.

Meteorological data, including station locations, humidity, solar radiation, temperature, and wind speed.

Geospatial datasets for the Saguling Watershed, including a digital elevation model (DEM), land cover, and soil data.

SWAT+ model files (Bieger et al., 2017) incorporating the GSMaP MVK v8 rainfall scenario.


The simulation timeframe spans from 2001 to 2023.
DOI: 10.15468/dl.f3sc23
title: Occurrence Download

description: A dataset containing 21214419 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Sitta yunnanensis Ogilvie-Grant, 1900, Spinus spinus (Linnaeus, 1758), Spodiopsar cineraceus (Temminck, 1835), Spodiopsar sericeus (Gmelin, 1789), Stercorarius longicaudus Vieillot, 1819, Stercorarius maccormicki H.Saunders, 1893, Sterna paradisaea Pontoppidan, 1763, Streptopelia tranquebarica (Hermann, 1804), Streptopelia turtur (Linnaeus, 1758), Struthio camelus Linnaeus, 1758, Sturnia sinensis (Gmelin, 1788), Sylvia atricapilla (Linnaeus, 1758), Sylvia borin (Boddaert, 1783), Syrrhaptes paradoxus (Pallas, 1773), Taeniopygia guttata (Vieillot, 1817), Tarsiger cyanurus (Pallas, 1773), Tauraco persa (Linnaeus, 1758), Terpsiphone affinis (Blyth, 1846), Terpsiphone incei (Gould, 1852), Trichoglossus haematodus (Linnaeus, 1771), Trichoglossus moluccanus (Gmelin, 1788), Tringa brevipes (Vieillot, 1816), Tringa guttifer (Nordmann, 1835), Trochalopteron elliotii J.Verreaux, 1870, Turdus cardis Temminck, 1831, Turdus mandarinus Bonaparte, 1850, Turdus mupinensis Laubmann, 1920, Turdus philomelos C.L.Brehm, 1831, Turdus pilaris Linnaeus, 1758, Tyto alba (Scopoli, 1769), Urosphena squameiceps (Swinhoe, 1863), Xema sabini (Sabine, 1819), Zosterops erythropleurus Swinhoe, 1863, Zoothera aurea (Holandre, 1825))"
 ]
}

 The dataset includes 21214419 records from 8240 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024728-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24172243.v1
title: Additional file 6 of Dosage compensation of Z sex chromosome genes in avian fibroblast cells

description: Additional file 6: Table S5. Dimorphic gene enrichment per chromosome (Fisher exact test for DE genes FDR &lt; 0.05 vs expressed genes)
DOI: 10.6084/m9.figshare.24172246
title: Additional file 7 of Dosage compensation of Z sex chromosome genes in avian fibroblast cells

description: Additional file 7: Table S6. Gametologue genes impact on differential expression estimates between male and female fibroblasts
DOI: 10.6084/m9.figshare.24172246.v1
title: Additional file 7 of Dosage compensation of Z sex chromosome genes in avian fibroblast cells

description: Additional file 7: Table S6. Gametologue genes impact on differential expression estimates between male and female fibroblasts
DOI: 10.6084/m9.figshare.24172249
title: Additional file 8 of Dosage compensation of Z sex chromosome genes in avian fibroblast cells

description: Additional file 8: Table S7. CAGE peaks annotation and differential expression analysis (male vs female)
DOI: 10.6084/m9.figshare.24172249.v1
title: Additional file 8 of Dosage compensation of Z sex chromosome genes in avian fibroblast cells

description: Additional file 8: Table S7. CAGE peaks annotation and differential expression analysis (male vs female)
DOI: 10.6084/m9.figshare.24172252
title: Additional file 9 of Dosage compensation of Z sex chromosome genes in avian fibroblast cells

description: Additional file 9: Table S8. Effect of medium on RPS6 expression. Differential expression analysis for DMEM/10�S vs DMEM/F12/10�S
DOI: 10.6084/m9.figshare.24172252.v1
title: Additional file 9 of Dosage compensation of Z sex chromosome genes in avian fibroblast cells

description: Additional file 9: Table S8. Effect of medium on RPS6 expression. Differential expression analysis for DMEM/10�S vs DMEM/F12/10�S
DOI: 10.6084/m9.figshare.24172159
title: Additional file 2 of Scoliosis in osteogenesis imperfecta: identifying the genetic and non-genetic factors affecting severity and progression from longitudinal data of 290 patients

description: Additional file 2. Anonymized genetic testing results of the 54 patients newly reported in the current study.
DOI: 10.6084/m9.figshare.24172159.v1
title: Additional file 2 of Scoliosis in osteogenesis imperfecta: identifying the genetic and non-genetic factors affecting severity and progression from longitudinal data of 290 patients

description: Additional file 2. Anonymized genetic testing results of the 54 patients newly reported in the current study.
DOI: 10.6084/m9.figshare.24172104
title: Additional file 2 of Genomic profile of Chinese patients with endometrial carcinoma

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.24172104.v1
title: Additional file 2 of Genomic profile of Chinese patients with endometrial carcinoma

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.24172092
title: Additional file 1 of Analysis of clinical characteristics and risk factors of community-acquired pneumonia complicated by parapneumonic pleural effusion in elderly patients

description: Additional file 1.
DOI: 10.6084/m9.figshare.24172092.v1
title: Additional file 1 of Analysis of clinical characteristics and risk factors of community-acquired pneumonia complicated by parapneumonic pleural effusion in elderly patients

description: Additional file 1.
DOI: 10.21227/ay1x-da98
title: Conformal Aperture Inverse Design Framework Based on IDMBSA

description: This dateset is mainly used to submit simulation files and code related to the communication. The title of the paper”An Efficient and Versatile Conformal Aperture Inverse Design Framework Based on IDMBSA“. Any details about the simulation can be obtained by contacting e-mail: cschen1997@gmail.com . Mainly contains the following files:[1]. "psotoolbox.zip" is an optimization toolbox that we use in our matlab software, corresponding to Section III-B-2.[2]. "Script for editing CST field source files.zip" includes the editing script and the edited .dat and .xml file (field source in CST), corresponding Section IV-C,. [3]. "IDMBSA_verification Simulation.zip" gives simulation files(.cst) and results about Fig5 in the article, corresponding Section IV-C. [4]. "IDMBSA_application Simulation.zip" gives the units and arrays simulation files(.cst) and results, corresponding Section V. (Array simulation Click on "schematic" and view "task” in CST.)
DOI: 10.15468/dl.w9dgv4
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.706372 -33.862689, 148.706372 -33.864935, 148.704126 -33.864935, 148.704126 -33.871672, 148.699634 -33.871672, 148.699634 -33.876164, 148.706372 -33.876164, 148.706372 -33.871672, 148.713109 -33.871672, 148.713109 -33.869427, 148.717601 -33.869427, 148.717601 -33.864935, 148.710863 -33.864935, 148.710863 -33.862689, 148.706372 -33.862689))"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069845-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7wm72
title: Occurrence Download

description: A dataset containing 3993665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((123.9556 32.47356,131.78762 32.47356,131.78762 38.69427,123.9556 38.69427,123.9556 32.47356))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1976-2024"
 ]
}

 The dataset includes 3993665 records from 809 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069823-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24181028
title: Additional file 2 of Reducing gut microbiome-driven adipose tissue inflammation alleviates metabolic syndrome

description: Additional file 2: Table S1. Number of parameters per data type in each category in the network. Table S2. Summary table of parameters, including statistical information, cell type information, microbiota dependence/independence for genes, abundance of microbes, and network information. Table S3. IMM/RAW cell with Oscillibacter supplementation (data from GSE203488, GSE203516). Table S4. In vivo validation of O. valericigenes gavage (data from GSE215226). Table S5. RT-PCR  data from in vitro cell free  Oscillibacter supernatant titration on IMM cells.
DOI: 10.6084/m9.figshare.24181028.v1
title: Additional file 2 of Reducing gut microbiome-driven adipose tissue inflammation alleviates metabolic syndrome

description: Additional file 2: Table S1. Number of parameters per data type in each category in the network. Table S2. Summary table of parameters, including statistical information, cell type information, microbiota dependence/independence for genes, abundance of microbes, and network information. Table S3. IMM/RAW cell with Oscillibacter supplementation (data from GSE203488, GSE203516). Table S4. In vivo validation of O. valericigenes gavage (data from GSE215226). Table S5. RT-PCR  data from in vitro cell free  Oscillibacter supernatant titration on IMM cells.
DOI: 10.6084/m9.figshare.24181031
title: Additional file 3 of Reducing gut microbiome-driven adipose tissue inflammation alleviates metabolic syndrome

description: Additional file 3. Processed data of the single cell RNA sequencing from adipose tissue (WAT_filtered_feature_bc_matrix.h5).
DOI: 10.6084/m9.figshare.24181031.v1
title: Additional file 3 of Reducing gut microbiome-driven adipose tissue inflammation alleviates metabolic syndrome

description: Additional file 3. Processed data of the single cell RNA sequencing from adipose tissue (WAT_filtered_feature_bc_matrix.h5).
DOI: 10.6084/m9.figshare.26737344
title: Additional file 1 of Frontiers in plasma proteome profiling platforms: innovations and applications

description: Supplementary material 1.
DOI: 10.6084/m9.figshare.26737359.v1
title: Additional file 6 of Frontiers in plasma proteome profiling platforms: innovations and applications

description: Supplementary material 6. Table S5_Peptide_long_format.csv
DOI: 10.6084/m9.figshare.24180915
title: Additional file 1 of Immune and cytokine alterations and RNA-sequencing analysis in gestational tissues from pregnant women after recovery from COVID-19

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28818038
title: TRAC Knockout In T cells

description: Viability of T cells and TRAC knockout efficiency in CD4+ and CD8+ T cell subsets post-transfection of TRAC or NTC RNP, reported as the percentage of TCR α/β-negative cells.
DOI: 10.6084/m9.figshare.28818038.v1
title: TRAC Knockout In T cells

description: Viability of T cells and TRAC knockout efficiency in CD4+ and CD8+ T cell subsets post-transfection of TRAC or NTC RNP, reported as the percentage of TCR α/β-negative cells.
DOI: 10.15468/dl.ca859b
title: Occurrence Download

description: A dataset containing 1787091 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-75.91635 4.9281,-75.04901 4.9281,-75.04901 5.32324,-75.91635 5.32324,-75.91635 4.9281))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1787091 records from 264 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000320-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oxutma
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heniochus intermedius Steindachner, 1893"
 ]
}

 The dataset includes 130 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003482-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25752060
title: To be published in PLOS ONE: Comparing animal well-being between bile duct ligation models

description: A prevailing animal model currently used to study severe human diseases like obstructive cholestasis, primary biliary or sclerosing cholangitis, biliary atresia, and acute liver injury is the common bile duct ligation (cBDL). Modifications of this model include ligation of the left hepatic bile duct (pBDL) or ligation of the left bile duct with the corresponding left hepatic artery (pBDL+pAL). Both modifications induce cholestasis only in the left liver lobe. After induction of total or partial cholestasis in mice, the well-being of these animals was evaluated by assessing burrowing behavior, body weight, and a distress score. To compare the pathological features of these animal models, plasma levels of liver enzymes, bile acids, bilirubin, and within the liver tissue, necrosis, fibrosis, inflammation, as well as expression of genes involved in the synthesis or transport of bile acids were assessed. The survival rate of the animals and their well-being was comparable between pBDL+pAL and pBDL. However, surgical intervention by pBDL+pAL caused confluent necrosis and collagen depositions at the edge of necrotic tissue, whereas pBDL caused focal necrosis and fibrosis in between portal areas. Interestingly, pBDL animals had a higher survival rate and their well-being was significantly improved compared to cBDL animals. On day 14 after cBDL liver aspartate, as well as alanine aminotransferase, alkaline phosphatase, glutamate dehydrogenase, bile acids, and bilirubin were significantly elevated, but only glutamate dehydrogenase activity was increased after pBDL. Thus, pBDL may be primarily used to evaluate local features such as inflammation and fibrosis or regulation of genes involved in bile acid synthesis or transport but does not allow to study all systemic features of cholestasis. The pBDL model also has the advantage that fewer mice are needed, because of its high survival rate, and that the well-being of the animals is improved compared to the cBDL animal model.
DOI: 10.6084/m9.figshare.25752060.v1
title: To be published in PLOS ONE: Comparing animal well-being between bile duct ligation models

description: A prevailing animal model currently used to study severe human diseases like obstructive cholestasis, primary biliary or sclerosing cholangitis, biliary atresia, and acute liver injury is the common bile duct ligation (cBDL). Modifications of this model include ligation of the left hepatic bile duct (pBDL) or ligation of the left bile duct with the corresponding left hepatic artery (pBDL+pAL). Both modifications induce cholestasis only in the left liver lobe. After induction of total or partial cholestasis in mice, the well-being of these animals was evaluated by assessing burrowing behavior, body weight, and a distress score. To compare the pathological features of these animal models, plasma levels of liver enzymes, bile acids, bilirubin, and within the liver tissue, necrosis, fibrosis, inflammation, as well as expression of genes involved in the synthesis or transport of bile acids were assessed. The survival rate of the animals and their well-being was comparable between pBDL+pAL and pBDL. However, surgical intervention by pBDL+pAL caused confluent necrosis and collagen depositions at the edge of necrotic tissue, whereas pBDL caused focal necrosis and fibrosis in between portal areas. Interestingly, pBDL animals had a higher survival rate and their well-being was significantly improved compared to cBDL animals. On day 14 after cBDL liver aspartate, as well as alanine aminotransferase, alkaline phosphatase, glutamate dehydrogenase, bile acids, and bilirubin were significantly elevated, but only glutamate dehydrogenase activity was increased after pBDL. Thus, pBDL may be primarily used to evaluate local features such as inflammation and fibrosis or regulation of genes involved in bile acid synthesis or transport but does not allow to study all systemic features of cholestasis. The pBDL model also has the advantage that fewer mice are needed, because of its high survival rate, and that the well-being of the animals is improved compared to the cBDL animal model.
DOI: 10.15468/dl.3r8fdv
title: Occurrence Download

description: A dataset containing 14198753 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Accipitriformes",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen"
 ]
 }
 ]
}

 The dataset includes 14198753 records from 1025 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003482-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.87gh9z
title: Occurrence Download

description: A dataset containing 1101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Monitoreo y seguimiento de fauna terrestre para el AID y AII de la Central Hidroeléctrica de Calima. 2017-B."
 ]
}

 The dataset includes 1101 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045145-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nux81l
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Lithocardium macranthum (Chodat) Kuntze",
 "TaxonKey is Albizia multiflora (Kunth) Barneby & J.W.Grimes",
 "TaxonKey is Pithecellobium multiflorum Merr.",
 "TaxonKey is Acacia multiflora Kunth",
 "TaxonKey is Cavanillesia platanifolia (Humb. & Bonpl.) Kunth",
 "TaxonKey is Pourretia platanifolia Bonpl.",
 "TaxonKey is Terminalia valverdeae A.H.Gentry",
 "TaxonKey is Cordia macrantha Chodat"
 ]
 },
 {
 "or" : [
 "Country is Peru",
 "Country is Ecuador"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 146 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003482-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xc47jj
title: Occurrence Download

description: A dataset containing 556656 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Plant Resources Center"
 ]
}

 The dataset includes 556656 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045190-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p1uvk3
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Large protozoan and small metazoan abundance measured on concentrated water bottle samples at station PS65/593-14"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003482-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7gx672
title: Occurrence Download

description: A dataset containing 841 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Caracterización de los grupos hidrobiológicos de la modificación del Plan de Manejo Ambiental para el Bloque Apiay, departamento del Meta"
 ]
}

 The dataset includes 841 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045158-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fxmxax
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum glabratum Dunal",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 60 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003482-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y5dra3
title: Occurrence Download

description: A dataset containing 261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Tejidos colectados en la ventana de biodiversidad Ciénaga, Municipio de Ciénaga, Magdalena, Colombia"
 ]
}

 The dataset includes 261 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045180-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.