cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14288047
title: Unraveling the complexity of HRD assessment in ovarian cancer by combining genomic and functional approaches: translational analyses of MITO16-MaNGO-OV-2 Trial

description: Ovarian cancer (OvC) constitutes significant management challenges primarily due to its late-stage diagnosis and the development of resistance to chemotherapy. The standard treatment regimen typically includes carboplatin and paclitaxel, with the addition of PARP inhibitors (PARPi) for patients with high-grade serous ovarian cancer (HGSOC) harboring BRCA1/2 mutations. However, the variability in treatment responses suggests the need to investigate factors beyond BRCA1/2 mutations, such as DNA repair mechanisms and epigenetic alterations. Notably, homologous recombination repair deficiency (HRD) is observed in an additional 20% of HGSOC cases, indicating a broader spectrum of DNA repair defects. Existing commercial HRD assays have certain limitations, prompting a global effort to develop new genomic and functional tests through academic research.

This study investigates, in the 187 high grade serous and endometroid tumors from the MITO16/MaNGO-OV-2 trial, academic HRD genomic tests in conjunction with a RAD51 immunofluorescence assay to assess functional activation of HRD. Additionally, the study incorporates analysis of miR-506 expression as a putative epigenetic effector.
DOI: 10.6084/m9.figshare.28005842
title: Supplementary Material for: Treatment of paediatric colchicine poisoning with single-pass albumin dialysis: A case report

description: Introduction: Colchicine has a narrow therapeutic index, and doses &gt;0.5 mg/kg are considered toxic with a high mortality rate. 
Case presentation: A previously healthy 15-year-old presents to the emergency department with abdominal pain and vomiting following intentional ingestion of colchicine (0.56 mg/kg) 12 hours prior. By 24 hours post-ingestion, they developed a multiorgan injury with hepatic dysfunction, coagulopathy, lactic acidemia and pancytopenia, which prompted consideration of extracorporeal therapy (ECT). Considering the characteristics of colchicine, they were treated with continuous venovenous hemodiafiltration (CVVHDF) with single-pass albumin dialysis (SPAD) for 42 hours. They were subsequently discharged from the intensive care unit 48 hours after stopping CVVHDF with normal kidney function, resolved coagulopathy, and resolving pancytopenia and hepatic dysfunction. The rationale for CVVHDF with SPAD was based on the high protein binding, variably high volume of distribution, previous reports showing a sieving coefficient of 0.2 with CVVH, and the high mortality risk. We anticipated a high potential for rebound. Thus, continuous clearance would facilitate redistribution from the extravascular to intravascular space. SPAD was used to enhance the elimination of protein-bound fractions; the principle is that adding albumin to dialysate creates a protein-binding disequilibrium where the drug from the blood side may bind to albumin on the dialysate side. Conclusion: Colchicine ingestion of &gt;0.5mg/kg is highly toxic, and in addition to supportive management, continuous kidney replacement therapy with SPAD may be considered.
DOI: 10.15468/dl.9bk7fq
title: Occurrence Download

description: A dataset containing 9279 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-149.45855 -17.49272,-149.4967 -17.48449,-149.56703 -17.50693,-149.59171 -17.53087,-149.63585 -17.56454,-149.61491 -17.66179,-149.5977 -17.74708,-149.51989 -17.77701,-149.42339 -17.79496,-149.32239 -17.78524,-149.31566 -17.82938,-149.279 -17.85631,-149.20942 -17.88474,-149.14508 -17.88249,-149.10768 -17.85032,-149.12563 -17.77925,-149.15256 -17.73212,-149.27301 -17.72987,-149.26029 -17.66628,-149.28124 -17.56379,-149.37102 -17.51591,-149.45855 -17.49272))"
 ]
}

 The dataset includes 9279 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029610-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28000340
title: Oil field environmental factor data.xlsx

description: Data of environmental factors in oil - polluted site investigations, including pH, EC, TOC (dissolved organic carbon), iron content, total petroleum hydrocarbon content, etc. Forty - four samples are from Shengli Oilfield, and forty - three samples are from Dagang Oilfield.
DOI: 10.15468/dl.d2uj6q
title: Occurrence Download

description: A dataset containing 5237 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tockus damarensis (Shelley, 1888)"
 ]
}

 The dataset includes 5237 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029611-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbh6s7
title: Occurrence Download

description: A dataset containing 485 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is JiangSu",
 "TaxonKey is Platalea minor Temminck & Schlegel, 1849"
 ]
}

 The dataset includes 485 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029612-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1985537914
title: Practicals for Nanotechnology and Nanosciences Master

description: The modulated structures of the electronic density in GeTe ferroelectric thin films will be measured by GISAXS and SXRD.
DOI: 10.15151/esrf-es-2006646151
title: Scan TEST for CHRONOS

description: We are planning to test a few scripts for the automatisation of CHRONOS
A CHRONOS group (SP11) will also come with its cell to make a test scan (The cell can be considered as a static scan as no sample environnement will be used, no pressure or temperature or fluids).
DOI: 10.15151/esrf-es-2006926782
title: study cellulose fibers

description: study cellulose fibers
DOI: 10.15151/esrf-es-2003697977
title: powder analysis

description: powder analysis
DOI: 10.15151/esrf-es-1949188691
title: CryoEM-BAG France: Structural Biology using cryoEM in France

description: This proposal gathers Principal investigators from Institutions across France that use cryoEM to unravel the molecular mechanisms associated with different fundamental biological processes. Scientists belong to 10 centres that currently use CM01 for cryoEM. All the PIs in this application were part of the previous BAG MX2441, with one new member who has previously submitted samples to CM01 via rolling access. For this reason, and due to more regular use of microscope time from current users we have asked for a moderate increase in the number of shifts ( from 42 to 50).
According to our listing, over 18 projects are ready for data collection at ESRF CM01. Projects include the study of bacterial secretion systems (Bordeaux, Lyon, Paris), viruses and their infection mechanisms (Marseille), translation and its control (Bordeaux, Toulouse, Paris, Strasbourg), transcription (Strasbourg, Paris), cancer (Paris, Bordeaux, Toulouse) and macromolecular transport (Bordeaux, Lyon, Strasbourg).
DOI: 10.15151/esrf-es-2003644594
title: Interaction between thiols and precious metals in microorganisms

description: The aim of the proposal is to explore the interaction of thiols, present in organic matter (humic acid, E. Colis, Koda.), with precious metals (Pt, Pd) in order to better understand the accumulation and transport of these metals in microorganisms. Samples are microorganisms exposed to varying degrees of platinum (100uM, 1h or 24h). They are deposited in a thin layer on a Si3N4 membrane and frozen in liquid nitrogen until analysis. The idea is to study the colocalization of S and Pt in different parts of the bacteria (interior, surface, vesicle) and to study changes in S speciation.
DOI: 10.15151/esrf-es-2004124768
title: XRR and GID characterization of 2D materials (without reactor)

description: In-house research on the 2D materials on solid substrate
DOI: 10.15151/esrf-es-2004207942
title: Test experiment on extrusion of liquid crystal polymers at elevated temperatures

description: liquid crystal polymers will be extruded through a heated glass capillary at elevated temperatures (70 deg centigrade) via a syringe pressured with compressed air to emulate additive manufacturing processes
DOI: 10.6084/m9.figshare.28005836
title: putative predatory gene in ZHJ-2-198_annotation.xlsx

description: This dataset contained genes that were found unique to <i>Peredibacter </i>HCB2-198 when compared to other non-predatory bacteria in the phylum <i>Bdellovibrionota</i>
DOI: 10.6084/m9.figshare.28005836.v1
title: putative predatory gene in ZHJ-2-198_annotation.xlsx

description: This dataset contained genes that were found unique to <i>Peredibacter </i>HCB2-198 when compared to other non-predatory bacteria in the phylum <i>Bdellovibrionota</i>
DOI: 10.15151/esrf-es-1965466966
title: In-situ MHz X-ray phase contrast imaging of fragmentation of composite and rock materials under high strain rate compression under low temp

description: Low cryogenic temperatures can influence the failure and fragmentation mechanisms under high-rate loading. While in rock materials this relates to meteorite impact on icy planets, in composite materials are crucial to the transportation and aerospace industries, yet they are prone to sudden failure. In this study, we aim to utilise MHz-rate X-ray imaging to directly uncover the relationship between ply delamination in composites exposed to aerospace conditions and fragmentation of Mg-rich orthosilicate peridotite. Specimens will undergo high strain-rate loading via ID19 SHPB system and temperature variations (-50 to 23°C) using thermal conditioning systems already used in MA5286 and MA5715, with real-time in-situ X-ray phase-contrast imaging (XPCI) tracking the evolution of critical damage evolution.
DOI: 10.15151/esrf-es-1943062363
title: Elucidating Tactile Sensors by X-ray Holotomography

description: Our current understanding of the vibrissa follicle stems from lightmicroscopy. Inferring 3d structure from 2d serial sections poses serious limitations, however. Preliminary findings from a test scan at the ID16A in contrast provided a much richer picture of vibrissal innervation and ultrastructure. In the so called vibrissa follicle complex the 3d arrangement of mechanosensitive nerve endings determine transduction mechanisms in the context of elaborate accessory structures. Holotomograms provide distinctive advantage in resolving this arrangement to elucidate this poorly understood mechanosensory structure of mammals. Here, we aim to image the nanostructure of a whole vibrissa follicle and the first neuronal projection layers in the brain at the ID16A. Such data would allow for the first time a synopsis of all axons entering the follicle along with accessory mechanosensory machinery.
DOI: 10.15151/esrf-es-1941851534
title: Photoinduced phase transition towards lower symmetry in functionnal materials monitored by time-resolved x-ray diffraction

description: Photoinduced phase transitions have open a wide field of investigation for functional materials, where a single laser shot can drive a macroscopic phase transition, which may persist at room temperature. Usually, thermal phase transition on warming or photoinduced phase transition processes occur from a low symmetry towards a higher symmetry phase, due to entropy consideration. We have recently shown that coupled changes of electronic state and symmetry at thermal equilibrium allows for the appearance of high temperature low symmetry phases, which we observed in a spin-crossover material. We propose to study by time-resolved x-ray diffraction the dynamics beyond photoinduced change of spin state and symmetry breaking, for understanding how the photoinduced change of spin state drives symmetry-breaking. Photoinduced symmetry breaking represents a fascinating perspective, as many functions are related to ordering phenomena, such as ferromagnetism, ferroelectricity of ferroelasticity.
DOI: 10.15151/esrf-es-1996449392
title: Collection of some model compounds.

description: In this experimental session we will collect XAS spectra from different model compounds in order to carry out the analysis of previous data.
DOI: 10.15151/esrf-es-1940864193
title: Activation/Carburization of Mo-based catalysts for selective hydrogenation reaction

description: The project wishes to develop catalysts based on Transition Metal Carbides (TMC) ( Mo ) which are attractive alternatives to noble metals due to the
coexistence of metallic and acidic/oxophilic functionalities from abundant and cost-effective available metals. One of the main difficulties with carbide catalysts
is to control their activation (carburization) in order to precisely control the carbide/oxide balance needed for selective hydrogenation and hydrogenolysis. We
propose the thorough characterization of the Molybdenum catalysts supported on TiO2 and carbon using classic XAS
(XANES and EXAFS) at the Mo K edge during the carburization process for probing the full carbide speciation in severe conditions (high temperature, 700-800°C, and in
Methane/hydrogen atmosphere). The High-Temperature in-situ cell available on FAME-UHD beamline will allow us to fully reproduce lab-scale experiments in a
broad range of temperatures and atmospheres.
DOI: 10.15151/esrf-es-1940869051
title: High-Pressure Induced Transformations in Eu–Zn–As Zintl Pnictides

description: This research proposal is dedicated to exploring the structural properties of Eu–Zn–As Zintl Pnictides (ZPs) under high-pressure (HP) conditions. The impact of HP on the structure and properties of these perspective quantum materials is poorly studied, although HP is often used to prepare bulk thermoelectric and to improve transport properties of materials.We propose to investigate following unreported yet ZPs within Eu–Zn–As phase space with different dimensionalities of polyanionic frameworks: Eu17Zn5As18 (0D), Eu3Zn2As4 (1D), and β-Eu2ZnAs2 (1D) and α-Eu2ZnAs2 (0D) under pressures up to 50 GPa. Single-crystal X-ray diffraction (SCXRD) studies under hydrostatic pressure will help us to provide insight into tunability mechanism within Zintl polyanionic frameworks of different dimensionalities under hydrostatic pressures. Followed by the physical property measurements, we aim to establish structure-property relationships necessary for designing novel quantum materials.
DOI: 10.15151/esrf-es-1940874069
title: New instrument for nano-XRD and nano-XRF at extreme conditions at ID27

description: A new, unique nano-focus instrumentation for rapid parallel XRF and XRD as well as X-ray imaging measurements at extreme pT conditions will be constructed on ID27. Funding for this project was partially obtained from German authorities in the framework of a BMBF project by M. Wilke (Potsdam), S. Jahn (Cologne) and D. Andrault (Clermont-Ferrand). The planned work is outlined in a collaboration contract between ESRF, University Potsdam and Cologne University (CL 0309). 
The instrument benefits from the very small beam size and the ultimate brilliance provided by the new diffraction-limited synchrotron radiation source at ESRF. During the LTP the new instrument will be benchmarked and employed to perform cutting-edge experiments for understanding materials relevant to processes of the deep Earth. Additionally, this unique setup offers the possibility for applications ranging from materials sciences in the field of superhard or superdense materials to high-pressure solid-state physics.
DOI: 10.15151/esrf-es-1941855294
title: XAS investigation of the Fe local atomic structure and reactivity in dense Fe-bearing silicate melts

description: Terrestrial planets and exoplanets are thought to host deep magma oceans at least during their early accretion. The physical (e.g. density and transport properties) and chemical (e.g. redox state of Fe) properties of the dense Fe-bearing silicate melts which compose these magma oceans determine the subsequent evolution of the planet interior and the atmosphere composition. However, experimental DAC studies of silicate liquids are difficult due to the chemical diffusion and ab initio simulations approaches are challenged by the complex chemical behaviour of Fe in oxide melts. This proposal aims at providing insights on Fe-bearing silicates' density and reactivity by measuring the local atomic structure around Fe atoms, and the oxidation and spin states of Fe at pressures relevant for large terrestrial planet interiors. In situ XAS measurements will be performed in shock compressed Fe-bearing silicates on the ID24-ED beamline coupled with the High-Power Laser Facility.
DOI: 10.15151/esrf-es-1992582793
title: Operando XAFS measurements of CO2 and CH4 conversions on Ge-zeolites

description: Ge containing zeolites will be studied under CO2 hydrogenation and CH4 oxidation conditions using conventional reactors such as TPC cell or gas blower
DOI: 10.15151/esrf-es-1987823894
title: Grain Growth using Pink Beam

description: we are planning to measure time-resolved graingrowth process using pink beam DFXM
DOI: 10.15468/dl.sxs5hy
title: Occurrence Download

description: A dataset containing 1118 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is JiangSu",
 "TaxonKey is Himantopus himantopus (Linnaeus, 1758)"
 ]
}

 The dataset includes 1118 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029615-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12633600
title: Cell-type-specific cis-eQTLs data in SMR format from https://doi.org/10.1038/s41593-022-01128-z

description: Cell-type-specific cis-eQTLs data in SMR format from https://doi.org/10.1038/s41593-022-01128-z

The hg38 version of the coordinates is used
DOI: 10.5281/zenodo.12633599
title: Cell-type-specific cis-eQTLs data in SMR format from https://doi.org/10.1038/s41593-022-01128-z

description: Cell-type-specific cis-eQTLs data in SMR format from https://doi.org/10.1038/s41593-022-01128-z

The hg38 version of the coordinates is used
DOI: 10.5281/zenodo.14378614
title: Cell-type-specific cis-eQTLs data in SMR format from https://doi.org/10.1038/s41593-022-01128-z

description: Cell-type-specific cis-eQTLs data in SMR format from https://doi.org/10.1038/s41593-022-01128-z

The hg38 version of the coordinates is used
DOI: 10.15468/dl.8xuvgg
title: Occurrence Download

description: A dataset containing 8047 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-149.76086 -17.47936,-149.77108 -17.47066,-149.78042 -17.47327,-149.78846 -17.47566,-149.80998 -17.4761,-149.81672 -17.48175,-149.82052 -17.48511,-149.81933 -17.49414,-149.82194 -17.50218,-149.82563 -17.48457,-149.83324 -17.4824,-149.84432 -17.48197,-149.84976 -17.48566,-149.85432 -17.49349,-149.85584 -17.50827,-149.86497 -17.49153,-149.87106 -17.48957,-149.88584 -17.48805,-149.89649 -17.48805,-149.90475 -17.4861,-149.91061 -17.48305,-149.92105 -17.48675,-149.91757 -17.49262,-149.918 -17.49914,-149.91692 -17.50935,-149.91648 -17.52218,-149.90648 -17.53674,-149.8841 -17.55804,-149.87214 -17.56586,-149.86954 -17.57912,-149.8528 -17.59238,-149.83367 -17.59629,-149.80585 -17.59499,-149.79585 -17.58564,-149.78825 -17.56999,-149.78651 -17.55912,-149.78129 -17.55195,-149.77325 -17.54521,-149.77129 -17.54,-149.77086 -17.53174,-149.7726 -17.52478,-149.76956 -17.51957,-149.7626 -17.50979,-149.75673 -17.50609,-149.74782 -17.49414,-149.76086 -17.47936))"
 ]
}

 The dataset includes 8047 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029616-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8n9ufu
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Macao)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Sporobolus alterniflorus (Loisel.) P.M.Peterson & Saarela, Cyperus esculentus L.)"
 ]
}

 The dataset includes 15 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029617-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yckda5
title: Occurrence Download

description: A dataset containing 998 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-151.01755 -16.67633,-151.04069 -16.697,-151.04871 -16.72045,-151.05056 -16.77445,-151.02465 -16.79327,-150.99718 -16.82289,-150.97651 -16.82721,-150.94905 -16.80253,-150.93053 -16.77106,-150.95491 -16.7365,-150.98762 -16.6825,-151.01755 -16.67633))"
 ]
}

 The dataset includes 998 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029619-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28005893.v1
title: Groundwater depth in wells

description: We explore the relation between elevated groundwater table and seismic ground liquefaction based on the case of Beijing under the impact of the South-to-North Water Diversion Project. We collect groundwater table<i> </i>depth records and use them to drive three-dimensional geotechnical models that generate ground liquefaction hazard maps. We find a remarkable increase in coverage and severity of liquefaction due to groundwater table rise.
DOI: 10.15468/dl.y2t5zs
title: Occurrence Download

description: A dataset containing 1696 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is JiangSu",
 "TaxonKey is Ardea alba Linnaeus, 1758"
 ]
}

 The dataset includes 1696 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029620-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x3e4w6
title: Occurrence Download

description: A dataset containing 1398 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-151.47373 -16.72003,-151.48502 -16.73131,-151.49302 -16.74586,-151.50103 -16.76151,-151.49775 -16.8252,-151.48829 -16.89071,-151.45881 -16.92601,-151.42788 -16.91473,-151.34854 -16.87615,-151.34708 -16.84922,-151.35473 -16.83248,-151.36201 -16.82957,-151.37183 -16.82047,-151.38785 -16.81974,-151.39367 -16.80737,-151.40095 -16.79172,-151.41478 -16.77425,-151.42351 -16.75533,-151.43588 -16.73131,-151.45335 -16.72039,-151.47373 -16.72003))"
 ]
}

 The dataset includes 1398 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029621-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.