cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.18419/darus-2871/1
title: README.md

description: This file describes how to install and use the model and how to run a first simple simulation.
DOI: 10.18419/darus-2871/3
title: arm26.tar

description: Contains all files for the model, including the technical description and a readme file how to use/run the model.
DOI: 10.15468/dl.2cc87b
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aves)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-59.5159778937861 -18.0807442601035,-59.1147859472389 -18.0807442601035,-59.1147859472389 -17.6460510295733,-59.5159778937861 -17.6460510295733,-59.5159778937861 -18.0807442601035))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003395-241107131044228/datasets/export for details.
DOI: 10.18419/darus-2906/1
title: projections.tar.gz

description: Projection images (360 deg, angle increment 0.20 deg), dark image (di) and open beam image (ob) in 16 bit *.tif file format. (internal ID: 20201218_01/projections)
DOI: 10.18419/darus-2906/2
title: reconstructed.tar.gz

description: Reconstructed micro-XRCT data set in 16 bit *.tif file format. 2940x2940x2141 voxels with a uniform voxel size of 1.9 µm. (internal ID: 20201218_01/reconstructed)
DOI: 10.18419/darus-2906/3
title: Column3_mediumMineralization_20200128.tab

description: Log file of the applied injections and the recorded pressure with time stamps.
DOI: 10.18419/darus-2906/4
title: segmentedPNGs.tar.gz

description: Binarized images of the probabilities into glass beads, precipitated calcium carbonate, and pore space, as well as precipitated calcium carbonate and pore space (= initial pore space), each in a subfolder. In 8 bit *.png file format. 2682x2682x1340 voxels with a uniform voxel size of 1.9 µm.
DOI: 10.18419/darus-2906/5
title: probabilities.tar.gz

description: ilastik output: probabilities of phase identifiactions: red = glass beads, blue = precipitated calcium carbonate, green = pore space. In 24 bit *.png file format. 2680x2680x2141 voxels with a uniform voxel size of 1.9 µm.
DOI: 10.18419/darus-2908/1
title: reconstructed.tar.gz

description: Reconstructed micro-XRCT data set in 16 bit *.tif file format. 2940x2940x2141 voxels with a uniform voxel size of 2.2 µm. (internal ID: 20201216_01/reconstructed)
DOI: 10.18419/darus-2908/2
title: projections.tar.gz

description: Projection images (360 deg, angle increment 0.20 deg), dark image (di) and open beam image (ob) in 16 bit *.tif file format. (internal ID: 20201216_01/projections)
DOI: 10.18419/darus-2908/3
title: probabilities.tar.gz

description: ilastik output: probabilities of phase identifiactions: red = glass beads, blue = precipitated calcium carbonate, green = pore space. In 24 bit *.png file format. 2680x2680x2141 voxels with a uniform voxel size of 2.2 µm.
DOI: 10.18419/darus-2908/4
title: segmentedPNGs.tar.gz

description: Binarized images of the probabilities into glass beads, precipitated calcium carbonate, and pore space, as well as precipitated calcium carbonate and pore space (= initial pore space), each in a subfolder. In 8 bit *.png file format. 2682x2682x1340 voxels with a uniform voxel size of 2.2 µm.
DOI: 10.18419/darus-2908/5
title: Column10_lowMineralization_20200131.tab

description: Log file of the applied injections and the recorded pressure with time stamps.
DOI: 10.15468/dl.4ygrwn
title: Occurrence Download

description: A dataset containing 18688 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Pontosphaera huxleyi, Hymenomonas huxleyi (Lohmann, 1902) Kamptner, 1930, Coccolithus huxleyi (Lohmann) Kamptner et al., Emiliania huxleyi (Lohmann) Hay & Mohler, 1967, Gephyrocapsa huxleyi (Lohmann, 1902) Reinhart, 1972)"
 ]
}

 The dataset includes 18688 records from 270 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003393-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18419/darus-2982/2
title: allmin.tar

description: Contains all files for the model, including the technical description and a readme file how to use/run the model.
DOI: 10.18419/darus-2982/3
title: README.md

description: This file describes how to install and use the model and how to run a first simple simulation.
DOI: 10.18419/darus-2982/4
title: README.md

description: This file describes how to install and use the model and how to run a first simple simulation.
DOI: 10.18419/darus-2982/5
title: allmin.tgz

description: Contains all files for the model, including the technical description and a readme file how to use/run the model.
DOI: 10.18419/darus-3013
title: Replication data for: "Cationic molybdenum oxo alkylidenes stabilized by N-heterocyclic carbenes: from molecular systems to efficient supported metathesis catalysts"

description: All primary data files of measurements and processed data of the journal article mentioned under related publications from the Buchmeiser group and the Copéret gropup can be found here. &lt;br/&gt;
The data consist of:&lt;br/&gt;
*Processed (mestrenova) and unprocessed (fid-files) NMR spectra of molecular compunds&lt;br/&gt;
*FT-IR spectra&lt;br/&gt;
*Catalysis data (excel sheets)&lt;br/&gt;
*Data for calculating the catalyst loading on the silica&lt;br/&gt;
*Solid state NMR spectra of the immobilized catalyst
DOI: 10.18419/darus-506
title: Reanalysis of FDM-Communities Data for Engineering

description: Reanalysis (Content-analysis) of the user stories from the &lt;a href="https://bwfdm.scc.kit.edu/cgi-bin/daten/"&gt;FDMCommunities-Survey&lt;/a&gt; originated from engineering researchers.
description: bwFDM-Communities - User Stories, filtered by subject.
DOI: 10.18419/darus-506/1
title: ReanalysisFDMCommunitites_Codebook.pdf

description: Codebook
DOI: 10.18419/darus-506/2
title: ReanalysisFDMCommunities_DataAnalysisVisualization.xlsx

description: Complete file with Data, Documentation, Analysis and Visualisation
DOI: 10.18419/darus-506/3
title: ReanalysisFDMCommunitites_CombinedVariables.pdf

description: Documentation of compound variables
DOI: 10.18419/darus-506/4
title: ReanalysisFDMCommunities_rawData.tab

description: Raw data, comma separated
DOI: 10.18419/darus-506/5
title: ReanalysisFDMCommunitites_DataAnalysisVisualizationCode.xlsm

description: Complete file with Data, Documentation, Code (Makros), Analysis and Visualisation
DOI: 10.18419/darus-624
title: GraphML files for protein sequence networks of expansin homologues

description: GraphML files for undirected weighted graphs with nodes that represent protein sequences of expansin homologues. Protein sequences were clustered by a threshold of sequence identity to derive representative sequences.Pairwise sequence identity between two sequences was derived from global Needleman-Wunsch alignment. Protein sequence networks were generated with edge weights of pairwise sequence identity, filtered by a predefined threshold. Metadata of the nodes (e.g. annotations) and of the edges (the edge weights) were summarized in GraphML files.
description: The GraphML attributes for the edges comprise the edge weights (pairwise sequence identity, "weight").
The GraphML attributes for the nodes comprise the identifiers from the ExED ("sequence_id", "protein_id", "hfam_id", and "sfam_id" for sequence, protein, homologous family and superfamily identifiers, respectively), the NCBI taxonomy ID ("tax_id"), the annotated (organism) source name ("tax_name"), the taxonomic lineage of the source organism ("lineage", with taxa separated by "&lt;--"), and the length of the amino acid sequence ("sequence_length"). In addition, suggested color names are given for both fill color and border color of each node ("color" and "color_border").
DOI: 10.18419/darus-624/1
title: GH45_Sfam_1234_Ndomain_90_30.graphml

description: Protein sequence network for the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database including members of the GH45 family (from Pfam, version 32.0, accession PF02015).
The GraphML file contains representative nodes (clustered by 0.9 in CD-Hit) connected by at least 30% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).
DOI: 10.18419/darus-624/2
title: Sfam_123_Cdomain_90_60.graphml

description: Protein sequence network for C-terminal expansin domains from the bacterial, fungal, and plant superfamily from the Expansin Engineering Database. The GraphML file contains representative nodes (clustered by 0.9 in USEARCH/ UCLUST) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).
DOI: 10.18419/darus-624/3
title: CBM63_Sfams123_210-300_90_50.graphml

description: Protein sequence network for the bacterial, fungal, and plant superfamily from the Expansin Engineering Database (for sequences with length between 210 and 300 residues) including members of the CBM63 family (downloaded from the CAZy database on June 3, 2019). The GraphML file contains representative nodes (clustered by 0.9 in CD-Hit) connected by at least 50% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).
DOI: 10.18419/darus-624/4
title: Ndomains_1234_CBM_09_60identity.graphml

description: Protein sequence network for N-terminal expansin domains from the bacterial, fungal, plant and N-terminal domains superfamily from the Expansin Engineering Database.
The GraphML file contains representative nodes (clustered by 0.9 in USEARCH/ UCLUST) connected by at least 60% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).
DOI: 10.18419/darus-624/5
title: Sfams_123_210-300_90_50.graphml

description: Protein sequence network for N-terminal expansin domains from the bacterial, fungal, and plant superfamily from the Expansin Engineering Database, for sequences with length between 210 and 300 residues.The GraphML file contains representative nodes (clustered by 0.9 in USEARCH/ UCLUST) connected by at least 50% pairwise sequence identity (edge weights derived from Needleman-Wunsch alignments).
DOI: 10.18419/darus-634/1
title: ANN_params_MSE_L2.xlsx

description: ANN parameters for the regularization method "MSE+L2"
DOI: 10.18419/darus-634/2
title: ANN_params_MSE_L2_PHY.xlsx

description: ANN parameters for the regularization method "MSE+L2+PHY"
DOI: 10.18419/darus-634/3
title: ANN_params_MSE_PHY.xlsx

description: ANN parameters for the regularization method "MSE+PHY"
DOI: 10.18419/darus-634/4
title: ANN_params_MSE.xlsx

description: ANN parameters for the regularization method "MSE"
DOI: 10.18419/darus-634/5
title: README.md

description: README file explaining how the data is formatted
DOI: 10.18419/darus-796/1
title: ConcentrationsAndCalcite.xlsx
DOI: 10.15468/dl.x4t3hk
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-74.05303 4.67184,-74.05341 4.67124,-74.05303 4.67101,-74.05265 4.67162,-74.05303 4.67184))"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003397-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18419/darus-796/2
title: SorptionCoefficientsAndConcentrationsFitted.tar
DOI: 10.18419/darus-796/3
title: SorptionCoefficientsAndPKAFitted.tar
DOI: 10.18419/darus-796/4
title: SorptionCoefficientsOnlyFitted.tar
DOI: 10.18419/darus-796/5
title: SorptionCoefficientsAndKureaseFitted.tar
DOI: 10.15468/dl.67rzat
title: Occurrence Download

description: A dataset containing 49201 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus radiata D.Don"
 ]
}

 The dataset includes 49201 records from 350 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003394-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18419/darus-3456/1
title: classification.mp4

description: Video demonstrating our classification system.
DOI: 10.18419/darus-3456/2
title: Classification.zip

description: Screenshots of our classification system.
DOI: 10.18419/darus-3456/3
title: nmt.mp4

description: Video demonstrating our neural machine translation system.
DOI: 10.18419/darus-3456
title: Supplemental Material for "Visual-Explainable AI: The Use Case of Language Models"

description: Supplemental material for the poster "Visual-Explainable AI: The Use Case of Language Models" published at the International Conference on Data-Integrated Simulation Science 2023.
&lt;br&gt;
Collection of videos and images showing our interactive visualization systems for exploring language models: &lt;br&gt;
- Text classification (&lt;a href="https://github.com/MunzT/hiddenStatesVis"&gt;https://github.com/MunzT/hiddenStatesVis&lt;/a&gt;) &lt;br&gt;
- Neural machine translation (&lt;a href="https://github.com/MunzT/NMTVis"&gt;https://github.com/MunzT/NMTVis&lt;/a&gt;)
DOI: 10.18419/darus-3456/4
title: NMT.zip

description: Screenshots of our neural machine translation system.
DOI: 10.18419/darus-3598
title: Dumux code for Stokes-Darcy mortar method

description: &lt;p&gt;This dataset contains the source code for the examples shown in&lt;br&gt;&lt;br&gt;

Boon, W.M., Gläser, D., Helmig, R. and Yotov, I.&lt;br&gt;
A mortar method for the coupled Stokes-Darcy problem using the MAC scheme for Stokes and mixed finite elements for Darcy.&lt;br&gt;
Comput Geosci (2024). https://doi.org/10.1007/s10596-023-10267-6&lt;br&gt;&lt;br&gt;

with the open-source simulator &lt;a href="https://dumux.org"&gt;Dumux&lt;/a&gt;. The first one investigates the orders of convergence with respect to the mesh size for different element types, as well as the efficiency of the interface preconditioner. The second example simulates flow through a channel around a porous obstacle. The third one presents a porous medium with a highly heterogeneous permeability field based on the Society of Petroleum Engineers SPE10 benchmark, over which a free-flow field is simulated. The code can be used, for instance, to reproduce the results published at &lt;a href="https://doi.org/10.18419/darus-3599"&gt;DaRUS&lt;/a&gt;.
description: More information regarding the software in this dataset can be found in the README.md.
DOI: 10.18419/darus-3599
title: Results for Stokes-Darcy mortar method

description: This dataset contains the results of the examples shown in the publication #TODO: add doi once accepted#. The first one investigates the orders of convergence with respect to the mesh size for different element types, as well as the efficiency of the interface preconditioner. The second example simulates flow through a channel around a porous obstacle. The third one presents a porous medium with a highly heterogeneous permeability field based on the Society of Petroleum Engineers SPE10 benchmark, over which a free-flow field is simulated. The code for reproduction of these results can be found at &lt;a href="https://doi.org/10.18419/darus-3598"&gt;DaRUS&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;Each archive contains the results of one of the examples in the form of &lt;a href="https://kitware.github.io/vtk-examples/site/VTKFileFormats/"&gt;VTK files&lt;/a&gt; that can be visualized with e.g. &lt;a href="https://www.paraview.org/"&gt;ParaView&lt;/a&gt;. Furthermore, the &lt;code&gt;.geo&lt;/code&gt; and &lt;code&gt;.msh&lt;/code&gt; files are geometry and mesh files that can be opened with &lt;a href="https://gmsh.info/"&gt;gmsh&lt;/a&gt;.&lt;/p&gt;
description: DuMuX, 3.4
DOI: 10.18419/darus-3615/1
title: Network 3.tar

description: The images from Network 3 for all processes. The sub-folders provide information about the capillary number, the viscosity ratio, and the frames per second.
DOI: 10.18419/darus-3615/2
title: Network 1.tar

description: The images for Network 1. The sub-folders provide information regarding the acquisition frame rate, the capillary number, and the viscosity.
DOI: 10.18419/darus-3615/3
title: Network 2.tar

description: All images for Network 2. The sub-folders provide information on the capillary number, the viscosity ratio, and the acquisition frames per second.
DOI: 10.18419/darus-3615/4
title: Network 4.tar

description: All images for Network 4. The sub-folders provide information on the capillary number, the viscosity ratio, and the acquisition frames per second.
DOI: 10.18419/darus-3685/1
title: NMR-1.zip
DOI: 10.18419/darus-3685/2
title: NMR-3.zip
DOI: 10.18419/darus-3685/3
title: x-ray data.zip
DOI: 10.18419/darus-3685
title: Replication data of Buchmeiser group for: "Isomers of Molybdenum Imido Alkylidene N-Heterocyclic Carbene Complexes"

description: All primary data files related to the publication. Procedures, recation conditions and used analytical equipment is discussed in detail in the experimental section or the supporting information of the paper. Novel complexes were examined via nuclear magnetic resonance (NMR) spectroscopy and the spectra can be found in NMR folder. The NMR folder also contains NMR experiments mentioned in the paper and shown in the Supplementary Information. NMR Spectra are named according to the numbering in the publication. Crystal data (see related datasets) is deposited in the Cambridge Structural Database (CSD) of the Cambridge Crystallographic Data Centre (CCDC)
description: The structure of data and the names of compounds are the same as in the main publication.
DOI: 10.18419/darus-3685/4
title: NMR-2.zip
DOI: 10.18419/darus-3701/1
title: NMR 1.zip-1.zip
DOI: 10.18419/darus-3701/2
title: x-ray data.zip
DOI: 10.18419/darus-3701/3
title: NMR 3.zip-3.zip
DOI: 10.18419/darus-3701
title: Replication data of Buchmeiser group for: "Ligand Variations in Neutral and Cationic Molybdenum Alkylidyne NHC Catalysts"

description: All primary data files related to the publication. Procedures, recation conditions and used analytical equipment is discussed in detail in the experimental section or the supporting information of the paper. Novel complexes were examined via nuclear magnetic resonance (NMR) spectroscopy and the spectra can be found in NMR folder. The NMR folder also contains NMR experiments mentioned in the paper and shown in the Supplementary Information. NMR Spectra are named according to the numbering in the publication. Crystal data (see related datasets) is deposited in the Cambridge Structural Database (CSD) of the Cambridge Crystallographic Data Centre (CCDC)
description: The structure of data and the names of compounds are the same as in the main publication.
DOI: 10.18419/darus-3701/4
title: NMR 2-zip-2.zip
DOI: 10.18419/darus-3869
title: Replication Data for: Constraint-aware neural networks for Riemann problems

description: Data sets of the article "Constraint-aware neural networks for Riemann problems", consisting of training and test data sets for Riemann solutions of the cubic flux model, an isothermal two-phase model, and the Euler equations for an ideal gas. You can find detailed information in the &lt;a href="https://darus.uni-stuttgart.de/file.xhtml?fileId=273463"&gt;README.md&lt;/a&gt;.
DOI: 10.18419/darus-3733/1
title: nmr.zip

description: NMR Data
DOI: 10.18419/darus-3733/2
title: PUR-isec.zip

description: ISEC Data
DOI: 10.18419/darus-3733/3
title: PUR-bet.zip

description: BET Data
DOI: 10.18419/darus-3733/4
title: PUR-conversions-continuous flow.zip

description: MS Excel Spreadsheet
DOI: 10.18419/darus-3733/5
title: Table 2.zip

description: MS Excel Spreadsheet
DOI: 10.18419/darus-3741
title: Replication Data for: Effect of liquid confinement on regioselectivity in the hydrosilylation of alkynes with cationic Rh(i) N-heterocyclic carbene catalysts

description: All primary data files related to the publication. Procedures, reaction conditions and used analytical equipment is discussed in detail in the experimental section or the supporting information of the paper. Novel complexes were examined via nuclear magnetic resonance (NMR) spectroscopy and the spectra can be found in NMR folder. The NMR folder also contains NMR experiments mentioned in the paper and shown in the Supplementary Information. NMR Spectra are named according to the numbering in the publication.
DOI: 10.18419/darus-3745/1
title: conicalDiffuser_3M_polyMesh.tar.gz

description: Polymesh for the case with 3 million cells.
DOI: 10.18419/darus-3745/2
title: conicalDiffuser_3M_restartFields.tar.gz

description: Fields of a developed flow for the case with 3 million cells.
DOI: 10.18419/darus-3745/3
title: conicalDiffuser_145M_polyMesh.tar.gz

description: Polymesh for the case with 145 million cells.
DOI: 10.18419/darus-3745/4
title: conicalDiffuser_145M_restartFields.tar.gz

description: Fields of a developed flow for the case with 145 million cells.
DOI: 10.18419/darus-3745
title: exaFOAM Microbenchmark MB10 - ERCOFTAC conical diffuser LES

description: This work is part of the exaFOAM project that aims to enable the open-source CFD software OpenFOAM to exploit massively parallel HPC architectures and overcome performance scaling bottlenecks. The ERCOFTAC conical diffuser is a challenging case for turbulence modeling since it operates in the flow regime close to separation at the diffuser wall. Depending on the turbulence model the simulation may predict separation producing results, which do not correspond to the experimental ones. This is shown in the description of the RAS microbenchmark based on the low Reynolds k-omega-SST turbulence model. Here, an additional setup and corresponding microbenchmark incorporating an LES model is proposed. Detailed information and case setup can be found in the README.md file contained in the case setup file.
description: OpenFOAM, v2106
description: The case setup in DaRUS is a snapshot (commit 1dcdaace8bc3135679dea3db3c56fb24404c456f) from the code repository of the OpenFOAM High Performance Computing Technical Committee https://develop.openfoam.com/committees/hpc/-/tree/develop/incompressible/pimpleFoam/LES/conicalDiffuser
DOI: 10.18419/darus-3745/5
title: MB10_case_setup.tgz

description: MB10 case setup and readme file with instructions for execution.
DOI: 10.15468/dl.4hn9te
title: Occurrence Download

description: A dataset containing 269272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-07-13",
 "EventDate is less than or equal to 2024-08-12",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 269272 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054556-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ek5dmp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.274559 -36.38023, 149.274559 -36.386967, 149.27905 -36.386967, 149.27905 -36.38023, 149.274559 -36.38023))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054611-240626123714530/datasets/export for details.