cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34894/wcrqr7
title: TIC-Collaborative

description: TIC-Collaborative was a collaborative digital humanities project that focused on transnational intellectual cooperation (TIC) in the long nineteenth century, in particular on transnational connections in the field of social reform. The dataset contains information on over 1650 international congresses and 450 organizations and conference series related to the social question. The project focussed on the Low Countries and a selection of reform areas. The data van be queried as linked data via https://druid.datalegened.net. This dataset consist of: 
- International organisations and congres series 
- Persons
- Relations between persons and congresses
- Congresses
- Bibliographic metadata (conference proceedings)
- Referenced places

More information: Verbruggen, C., Deroo, F., Blomme, H., D’haeninck, T., Thiry, A., van Diem, L., Vandersmissen, J., Mestdagh, E., Billiet, B., Wolff, J., Chambers, S., De Potter, P. D., Carlier, J., Van Praet, C., Leonards, C., & Randeraad, N. (2022). Social Reform International Congresses and Organizations (1846–1914): From Sources to Data. Journal of Open Humanities Data, 8: 13, pp. 1–13. DOI: https://doi.org/10.5334/johd.69
DOI: 10.5061/dryad.hn626p7
title: Data from: Combining ground‐penetrating radar with terrestrial LiDAR scanning to estimate the spatial distribution of liquid water content in seasonal snowpacks

description: Many communities and ecosystems around the world rely on mountain
 snowpacks to provide valuable water resources. An important consideration
 for water resources planning is runoff timing, which can be strongly
 influenced by the physical process of water storage within and release
 from seasonal snowpacks. The aim of this study is to present a novel
 method that combines light detection and ranging with ground‐penetrating
 radar to nondestructively estimate the spatial distribution of bulk liquid
 water content in a seasonal snowpack during spring snowmelt. We develop
 these methods in a manner to be applicable within a short time window,
 making it possible to spatially observe rapid changes that occur to this
 property at subdaily timescales. We applied these methods at two
 experimental plots in Colorado, showing the high variability of liquid
 water content in snow. Volumetric liquid water contents ranged from near
 zero to 19%vol within the scale of meters. We also show rapid changes in
 bulk liquid water content of up to 5%vol that occur over subdaily
 timescales. The presented methods have an average uncertainty in bulk
 liquid water content of 1.5%vol, making them applicable for future studies
 to estimate the complex spatio‐temporal dynamics of liquid water in snow.
description: GPR_TWT_2017_WRRmethodsTwo way traveltime data of ground penetrating radar wave from the snow surface to the ground surface at two sites in the Colorado Rocky Mountains.
DOI: 10.5061/dryad.ct8p264
title: Data from: Environmental filtering improves ecological niche models across multiple scales

description: 1. A clear challenge for ecological niche modeling is determining how to
 best mitigate the effects of sampling bias from commonly collected
 biodiversity data. Recent approaches have focused on filtering occurrences
 in overrepresented regions based on geographic or environmental proximity.
 2. We tested the efficacy of filtering in geographic and environmental
 space using occurrence data from four species. Our evaluation strategies
 examined 14 distance measures in geographic and environmental spaces and
 eight combinations of environmental variables and their ordinations. This
 resulted in 78 datasets for each species, which we evaluated using area
 under the curve (AUC), the difference between training and testing AUC,
 omission rate, the true skill statistic, and Schoener’s D to examine the
 effects of different filtering schemes. 3. The degree of change produced
 by filtering on predicted suitability and evaluation statistics increased
 with increasing range size. Environmental filtering resulted in higher
 model fit at larger extents and retained more occurrences than geographic
 filtering. 4. Our results indicate that models should be evaluated using
 multiple evaluation statistics at multiple thresholds. The use of bin
 sizes when filtering in environmental space allows for simple comparison
 between species and filter types and makes for an easily reportable and
 repeatable distance metric. We specifically recommend that ecological
 niche models using natural history collection data filter in environmental
 space with variables derived from permutation importance or the first few
 axes of a principal components ordination.
description: ENM_FilteringAssociated scripts and data to run all analyses and create all figures in Castellanos et al. 2019.
DOI: 10.5061/dryad.ns2517d
title: Data from: Loss of top-down biotic interactions changes the relative benefits for obligate mutualists

description: The collapse of mutualisms due to anthropogenic changes is contributing to
 losses of biodiversity. Top predators can regulate biotic interactions
 between species at lower trophic levels and may contribute to the
 stability of such mutualisms, but they are particularly likely to be lost
 after disturbance of communities. We focused on the mutualism between the
 fig tree Ficus microcarpa and its host-specific pollinator fig wasp and
 compared the benefits accrued by the mutualists in natural and
 translocated areas of distribution. Parasitoids of the pollinator were
 rare or absent outside the natural range of the mutualists, where the
 relative benefits the mutualists gained from their interaction were
 changed significantly away from the plant’s natural range due to reduced
 seed production rather than increased numbers of pollinator offspring.
 Furthermore, in the absence of the negative effects of its parasitoids, we
 detected an oviposition range expansion by the pollinator, with the use of
 a wider range of ovules that could otherwise have generated seeds. Loss of
 top-down control has therefore resulted in a change in the balance of
 reciprocal benefits that underpins this obligate mutualism, emphasising
 the value of maintaining food web complexity in the Anthropocene.
description: relative benefits of
 mutualists data for submissionThis data file comprises
 four parts: (1) data for the analyses concerning the characters of figs
 and fig wasp communities and the effects of NPFWs on the relative benefits
 of the mutualists; (2) pedicel length data for the analyses concerning the
 oviposition preferences of pollinators; (3) ovipositor length data of
 adult female pollinators; (4) number of pollinator foundresses from
 unmatured figs.
DOI: 10.5061/dryad.mv3276v
title: Data from: Akaganeite nanorices deposited muscovite mica surfaces as sunlight active green photocatalyst

description: Thin-films of akaganeite [FeO(OH)] nanorices deposited muscovite mica
 (ANPM) surfaces are produced using the facile urea assisted controlled
 self-assembly technique. The synthesized materials are characterized using
 scanning electron microscopy (SEM) with energy dispersive X-ray
 spectroscopy (EDS), atomic force microscopy, X-ray diffraction (XRD),
 Fourier transform infrared (FT-IR) spectroscopy and thermo gravimetric
 analysis (TGA). The prepared nanorices on mica surfaces show average
 particle length and width as 200 nm and 50 nm respectively. Synthesized
 material acts as an efficient photocatalyst under UV and sunlight
 conditions as demonstrated by the degradation of standard methylene blue
 solution. The methylene blue degradation efficiencies of the catalyst
 under exposure to 180 min sunlight and UV are 89% and 87.5% respectively
 which shows that the catalyst is highly active under sunlight than under
 UV light. Therefore, the synthesized material is a potential green
 photocatalyst in efficient treatment of industrial dye effluents under
 direct sunlight.
description: Akaganeite nanorices
 deposited muscovite mica surfaces detailed data (.docx
 format)Detailed data
 Anoja.docxAkaganeite nanorices
 deposited muscovite mica surfaces detailed data (.pdf
 format)Detailed data
 Anoja.docx.pdf
DOI: 10.5061/dryad.d82n3f8
title: Data from: Nonsense mutation in CFAP43 causes normal-pressure hydrocephalus with ciliary abnormalities

description: Objective: To identify genes related to normal pressure hydrocephalus
 (NPH) in one particular Japanese family with several members affected by
 NPH. Methods: We performed WES on a Japanese family with multiple
 individuals affected by NPH and identified a candidate gene. Then we
 generated knockout mouse using CRISPR/Cas9 to confirm the effect of the
 candidate gene on the pathogenesis of hydrocephalus. Results: In WES, we
 identified a loss-of-function variant in CFAP43 that segregated with the
 disease. CFAP43 encoding cilia- and flagella-associated protein is
 preferentially expressed in the testis. Recent studies have revealed that
 mutations in this gene cause male infertility owing to morphological
 abnormalities of sperm flagella. We knocked out mouse ortholog Cfap43
 using CRISPR/Cas9 technology, resulting in Cfap43-deficient mice that
 exhibited a hydrocephalus phenotype with morphological abnormality of
 motile cilia. Conclusion: Our results strongly suggest that CFAP43 is
 responsible for morphological or movement abnormalities of cilia in the
 brain that result in normal-pressure hydrocephalus.
description: Supplementarydata1
DOI: 10.5061/dryad.tm40gd8
title: Data from: Cross-species hybridization and the origin of North African date palms

description: Date palm (Phoenix dactylifera L.) is a major fruit crop of arid regions
 that were domesticated 7,000 y ago in the Near or Middle East. This
 species is cultivated widely in the Middle East and North Africa, and
 previous population genetic studies have shown genetic differentiation
 between these regions. We investigated the evolutionary history of P.
 dactylifera and its wild relatives by resequencing the genomes of date
 palm varieties and five of its closest relatives. Our results indicate
 that the North African population has mixed ancestry with components from
 Middle Eastern P. dactylifera and Phoenix theophrasti, a wild relative
 endemic to the Eastern Mediterranean. Introgressive hybridization is
 supported by tests of admixture, reduced subdivision between North African
 date palm and P. theophrasti, sharing of haplotypes in introgressed
 regions, and a population model that incorporates gene flow between these
 populations. Analysis of ancestry proportions indicates that as much as
 18% of the genome of North African varieties can be traced to P.
 theophrasti and a large percentage of loci in this population are
 segregating for single-nucleotide polymorphisms (SNPs) that are fixed in
 P. theophrasti and absent from date palm in the Middle East. We present a
 survey of Phoenix remains in the archaeobotanical record which supports a
 late arrival of date palm to North Africa. Our results suggest that
 hybridization with P. theophrasti was of central importance in the
 diversification history of the cultivated date palm.
description: SNPs from Flowers et al.
 (2019) in vcf formatThis file contains SNPs
 used in Flowers et al. (2019) Cross-species hybridization and the origin
 of North African date palms in vcf format. Only SNPs passing filters are
 included in the file.Flowers_et_al_2019.SNPs.vcf.gz
DOI: 10.5061/dryad.6sf5184
title: Data from: Effect of temperature on the biological parameters of the cabbage aphid Brevicoryne brassicae

description: The cabbage aphid, Brevicoryne brassicae Linnaeus is a pest of many plants
 of the Brassicaceae family including cabbage, Brassica olearacae Linnaeus,
 1753. We investigated the effect of temperature on the biological
 parameters of B. brassicae using different temperature-based models
 incorporated in the Insect Life Cycle Modelling software (ILCYM). Nymphs
 of first stage were individually placed in the incubators successively set
 at 10C, 15C, 20C, 25C, 30C, and 350C; 75±5% RH and L12: D12 hours
 photoperiods. We found that 1st nymph reached the adult stage after
 18.45±0.04 days (10°C), 10.37±0.26 days (15°C), 6.42±0.07 days (20°C),
 5.076±0.09 days (25°C) and 5.05±0.10 days (30°C); and failed at 35°C. The
 lower lethal temperatures for B. brassicae were 1.64C, 1.57C, 1.56C, and
 1.62°C with a thermal constant for development of 0.88, 0.87, and 0.08,
 0.79 degree/day for nymph I, II, III and IV respectively. The temperature
 10, 30 and 35°C were more lethal than 15, 20 and 25°C. Longevity was
 highest at 10°C (35.07±1.38 days). Fertility was nil at 30°C and highest
 at 20°C (46.36±1.73 nymphs/female). The stochastic simulation of the
 models obtained from the precedent biological parameters revealed that the
 life table parameters of B. brassiace were affected by the temperature.
 The net reproduction rate was highest at 20°C and lowest at 30°C. The
 average generation time decreased from 36.85±1.5 days (15°C) to 6.86±0.1
 days (30°C); the intrinsic rate of increase and the finite rate of
 increase were highest at 25°C. In general, the life cycle data and
 mathematical functions obtained in this study clearly illustrate the
 effect of temperature on the biology of B. brassicae. This knowledge will
 contribute to predicting the changes that may occur in a population of B.
 Brassiace in response to temperature variation.
description: B.brassicae data
 fileThe file encompasses the
 complete life table data of Brevicoryne brassicae monitored at 10, 15, 20,
 25, 30, and 35 degree celcius on Marcanta cabbage
 cultivarB.brassicae data
 set.txt
DOI: 10.5061/dryad.6jr886q
title: Data from: Ribosomal RNA gene repeats associate with the nuclear pore complex for maintenance after DNA damage

description: The ribosomal RNA genes (rDNA) comprise a highly repetitive gene cluster.
 The copy number of genes at this locus can readily change and is therefore
 one of the most unstable regions of the genome. DNA damage in rDNA occurs
 after binding of the replication fork blocking protein Fob1 in S phase,
 which triggers unequal sister chromatid recombination. However, the
 precise mechanisms by which such DNA double-strand breaks (DSBs) are
 repaired is not well understood. Here, we demonstrate that the conserved
 protein kinase Tel1 maintains rDNA stability after replication fork
 arrest. We show that rDNA associates with nuclear pores, which is
 dependent on DNA damage checkpoint kinases Mec1/Tel1 and replisome
 component Tof1. These findings suggest that rDNA-nuclear pore association
 is due to a replication fork block and subsequent DSB. Indeed,
 quantitative microscopy revealed that rDNA is relocated to the nuclear
 periphery upon induction of a DSB. Finally, rDNA stability was reduced in
 strains where this association with the nuclear envelope was prevented,
 which suggests its importance for avoiding improper recombination repair
 that could induce repeat instability.
description: Data
 fileThe file includes the
 data set used to reach the conclusions drawn in the manuscript. They are
 formatted as a zip archive.PLOS-Genetics-HorigomeUnozawa.zip
DOI: 10.5061/dryad.1745nv2
title: Data from: Artificial selection on walking distance suggests a mobility-sperm competitiveness trade-off

description: Securing matings is a key determinant of fitness and in many species males
 are the sex that engages in mate searching. Searching for mates is often
 associated with increased mobility. This elevated investment in movement
 is predicted to trade-off with sperm competitiveness, but few studies have
 directly tested whether this trade-off occurs. Here, we assessed whether
 artificial selection on mobility affected sperm competitiveness and mating
 behavior, and if increased mobility was due to increased leg length in red
 flour beetles (Tribolium castaneum). We found that in general, males
 selected for decreased mobility copulated for longer, stimulated females
 more during mating and tended to be better sperm competitors.
 Surprisingly, they also had longer legs. However, how well males performed
 in sperm competition depended on females. Males with reduced mobility
 always copulated for longer than males with high mobility, but this only
 translated into greater fertilization success in females from control
 populations and not the selection populations (treatment females). These
 results are consistent with a mate-searching/mating-duration trade-off and
 broadly support a trade-off between mobility and sperm competiveness.
description: Mating
 behaviormating
 behaviorleg
 lengthleg
 lengthCross
 matingcross
 mating
DOI: 10.5061/dryad.kb2f352
title: Data from: Spatial contraction of demersal fish populations in a large marine ecosystem

description: Aim: The interdependencies between trophic interactions, environmental
 factors and anthropogenic forcing determine how species distributions
 change over time. Large changes in species distributions have occurred as
 a result of climate change. The objective of this study was to analyse how
 the spatial distribution of cod and flounder have changed in the Baltic
 Sea during the past four decades characterized by large hydrological
 changes. Location: Baltic Sea Taxon: Cod (Gadus morhua) and flounder
 (Platichthys flesus) Methods: Catch per unit of effort (CPUE) data for
 adult and juvenile cod and for adult flounder were modelled using
 Delta-Generalized additive models including environmental and geographical
 variables between 1979 and 2016. From the annual CPUE predictions for each
 species, yearly distribution maps and depth distribution curves were
 obtained. Mean depth and the depth range were estimated to provide an
 indication on preferred depth and habitat occupancy. Results: Adult and
 juvenile cod showed a contraction in their distribution in the southern
 areas of the Baltic Sea. Flounder, instead, showed an expansion in its
 distribution with an increase in abundance in the northern areas. The
 depth distributions showed a progressive shift of the mean depth of
 occurrence towards shallower waters for adult cod and flounder and towards
 deeper waters for juvenile cod, as well as a contraction of the species
 depth ranges, evident mainly from the late 1980s. Main conclusions: Our
 study illustrates large changes in the spatial distribution of cod and
 flounder in the Baltic Sea. The changes in depth distribution occurred
 from the late 1980s are probably due to a combination of expanded areas of
 hypoxia in deep waters and an increase in predation risk in shallow
 waters. The net effect of these changes is an increased spatial overlap
 between life stages and species, which may amplify cod cannibalism and the
 interaction strength between cod and flounder.
description: Data_cod_flounderAdult cod, juvenile cod and flounder CPUE data (in grams). The datasets contain also the associated bottom temperature, salinity and oxygen concentration of each haul as well as the latitude and longitude in decimal degrees.
DOI: 10.5061/dryad.48cn500
title: Data from: Larger area facilitates richness-function effects in experimental microcosms

description: Species-area (SAR) and biodiversity-ecosystem function (BEF) relationships
 are central patterns in community ecology. Although research on both
 patterns often invokes mechanisms of community assembly, both SARs and
 BEFs are generally treated as separate phenomenon. Here we link the two by
 creating an experimental SAR in microcosm communities and show that
 greater species richness in larger areas is accompanied by greater
 ecosystem function. We then explore mechanisms of community assembly by
 determining whether rare, large, or high biomass species are more likely
 to persist in the larger microcosms. Our results indicate that larger
 areas harbor more rare species of a wider range of body sizes and have
 higher functional diversity, implying that the addition of niche space
 that supports rare species underlies the effect of area on species
 richness and function. Our results suggest that the preservation of large
 areas is a potentially useful way of maximizing the provisioning of
 ecosystem services through the maintenance of biodiversity.
description: DeLong_and_Gibert_2019_species_area_dataExcel spreadsheet file in four tabs. 1) Species names, cell volumes, and cell volume and biomass ranks of species. 2) Carbon, nitrogen, oxygen consumption, and biovolume of microcosm communities on the last day of the experiment. 3) Counts of each species on the last day by dish size and replicate, also converted into biomass. 4) Presence absence of each species in each dish by day and treatment.DeLong_Gibert_2019This zipped folder contains two Matlab scripts that analyze our data and produce all figures in the manuscript.
DOI: 10.5061/dryad.47174j0
title: Data from: Functional responses in habitat selection: clarifying hypotheses and interpretations

description: A fundamental challenge in habitat ecology and management is understanding
 the mechanisms generating animal distributions. Studies of habitat
 selection provide a lens into such mechanisms, but are often limited by
 unrealistic assumptions. For example, most studies assume that habitat
 selection is constant with respect to the availability of resources, such
 that habitat use remains proportional to availability. To the contrary, a
 growing body of work has shown the fallacy of this assumption, indicating
 that animals modify their behavior depending on the context at broader
 scales. This has been termed a functional response in habitat selection.
 Furthermore, a diversity of methods are employed to model functional
 responses in habitat selection, with little attention how methodology
 might affect scientific and conservation conclusions. Here, we first
 review the conceptual and statistical foundations of methods currently
 used to model functional responses and clarify the ecological tests
 evaluated within each approach. We then use a combination of simulated and
 empirical datasets to evaluate the similarities and differences among
 approaches. Importantly, we identified multiple statistical issues with
 the most widely applied approaches to understand functional responses,
 including: (1) a complex and important role of random- or individual-level
 intercepts in adjusting individual-level regression coefficients as
 resource availability changes, and (2) a sensitivity of results to poorly
 informed individual-level coefficients estimated for animals with low
 availability of a given resource. Consequently, we provide guidance on
 applying approaches that are insensitive to these issues with the goal of
 advancing our understanding of animal habitat ecology and management.
 Finally, we characterize the management implications of assuming
 similarity between the current approaches to model functional responses
 with two empirical datasets of federally threatened species: Canada lynx
 (Lynx canadensis) in the United States, and woodland caribou (Rangifer
 tarandus caribou) in Canada. Collectively, our assessment helps clarify
 the similarities and differences among current approaches and, therefore,
 assists the integration of functional responses into the mainstream of
 habitat ecology and management.
description: Empirical_RCodeThe attached code goes through the differing methods to model functional responses using the lynx example dataset ("LynxExample.csv"). The final figure combines all of the different approaches to easily visualize the similarities and differences.EmpiricalRCode.txtLynxExampleSimulation_RCodeThe attached provides the simulation code used to develop the different functional response scenarios and implement the different modeling approaches.SimulationRCode.txt