cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11675805.v4
title: Table S1

description: Table S1 details the antibiotic resistance genes, plasmid incompatibility group and CheckM results of the strains.
DOI: 10.6084/m9.figshare.11674206
title: Registered Photographs from "Improved Analysis of STEVE Photographs" JGR Article

description: These items are a series of registered images of the July 25, 2016 STEVE event that have been registered to angular coordinates of altitude and azimuth in the unit circle. The local zenith direction is at the center of the circle, and the local horizon (ignoring trees, buildings and other local obscurations) is at unit radius.Each registered photograph has 16 bits and 2,000 x 2,000 pixels.<br>
DOI: 10.6084/m9.figshare.11674206.v1
title: Registered Photographs from "Improved Analysis of STEVE Photographs" JGR Article

description: These items are a series of registered images of the July 25, 2016 STEVE event that have been registered to angular coordinates of altitude and azimuth in the unit circle. The local zenith direction is at the center of the circle, and the local horizon (ignoring trees, buildings and other local obscurations) is at unit radius.Each registered photograph has 16 bits and 2,000 x 2,000 pixels.<br>
DOI: 10.6084/m9.figshare.11674152
title: Mind the gap: Teachers’ conceptions of student-staff partnership and its potential to enhance educational quality

description: <b>Introduction:</b> Student-staff partnerships as a concept to improve medical education have received a growing amount of attention. Such partnerships are collaborations in which students and teachers seek to improve education by each adding their unique contribution to decision-making and implementation processes. Although previous research has demonstrated that students are favourable to this concept, teachers remain hesitant. The present study investigated teachers’ conceptions of student-staff partnerships and of the prerequisites that are necessary to render such partnerships successful and enhance educational quality. <b>Method:</b> We conducted semi-structured interviews with 14 course coordinators who lead course design teams and also teach in 4 bachelor health programmes, using Bovill and Bulley’s levels of student participation as sensitising concepts during data analysis. <b>Results:</b> The results pointed to three different conceptions of student-staff partnerships existing among teachers: <i>Teachers teach and students study</i>; <i>teachers teach and value students’ feedback;</i> and <i>teachers and students co-create</i>. The prerequisites for effective co-creation teachers identified were: Teachers must be open to involve students and create dialogues; students must be motivated and have good communication skills; the organisation must be supportive; and teachers should have the final say. <b>Conclusion:</b> We conclude that teachers’ conceptions are consistent with Bovill and Bulley’s levels of student participation. Under certain conditions, teachers are willing to co-create and reach the highest levels of student participation.
DOI: 10.6084/m9.figshare.11674155
title: Inferior pancreaticoduodenal artery aneurysms and Dunbar syndrome. Experience with the open surgery

description: <b>Introduction:</b> Median arcuate ligament or Dunbar syndrome is a rare vascular disorder causing celiac trunk stenosis or occlusion due to the extrinsic compression by the median arcuate ligament. A visceral aneurysm may develop as a complication. <b>Patients and methods:</b> We experienced an inferior pancreaticoduodenal artery aneurysm presentation in two female patients with the median arcuate syndrome previously diagnosed. One patient presented with postprandial abdominal pain and weight loss and the other one was asymptomatic. <b>Results:</b> We described our experience with the both patients being successfully treated surgically. <b>Conclusions:</b> Awareness of possible repercussions of the celiac trunk stenosis to peripancreatic arteries should be elevated. Restoration of physiological blood flow by removing pathologic anatomy should be performed. Since there is no correlation between the size of a visceral aneurysm and the risk of rupture, having a high postrupture mortality, pancreaticoduodenal artery aneurysms should be treated even if asymptomatic. Surgical treatment remains the mainstay treatment of the Dunbar syndrome complicated by visceral aneurysms.
DOI: 10.6084/m9.figshare.11674152.v2
title: Mind the gap: Teachers’ conceptions of student-staff partnership and its potential to enhance educational quality

description: <b>Introduction:</b> Student-staff partnerships as a concept to improve medical education have received a growing amount of attention. Such partnerships are collaborations in which students and teachers seek to improve education by each adding their unique contribution to decision-making and implementation processes. Although previous research has demonstrated that students are favourable to this concept, teachers remain hesitant. The present study investigated teachers’ conceptions of student-staff partnerships and of the prerequisites that are necessary to render such partnerships successful and enhance educational quality. <b>Method:</b> We conducted semi-structured interviews with 14 course coordinators who lead course design teams and also teach in 4 bachelor health programmes, using Bovill and Bulley’s levels of student participation as sensitising concepts during data analysis. <b>Results:</b> The results pointed to three different conceptions of student-staff partnerships existing among teachers: <i>Teachers teach and students study</i>; <i>teachers teach and value students’ feedback;</i> and <i>teachers and students co-create</i>. The prerequisites for effective co-creation teachers identified were: Teachers must be open to involve students and create dialogues; students must be motivated and have good communication skills; the organisation must be supportive; and teachers should have the final say. <b>Conclusion:</b> We conclude that teachers’ conceptions are consistent with Bovill and Bulley’s levels of student participation. Under certain conditions, teachers are willing to co-create and reach the highest levels of student participation.
DOI: 10.6084/m9.figshare.11674155.v2
title: Inferior pancreaticoduodenal artery aneurysms and Dunbar syndrome. Experience with the open surgery

description: <b>Introduction:</b> Median arcuate ligament or Dunbar syndrome is a rare vascular disorder causing celiac trunk stenosis or occlusion due to the extrinsic compression by the median arcuate ligament. A visceral aneurysm may develop as a complication. <b>Patients and methods:</b> We experienced an inferior pancreaticoduodenal artery aneurysm presentation in two female patients with the median arcuate syndrome previously diagnosed. One patient presented with postprandial abdominal pain and weight loss and the other one was asymptomatic. <b>Results:</b> We described our experience with the both patients being successfully treated surgically. <b>Conclusions:</b> Awareness of possible repercussions of the celiac trunk stenosis to peripancreatic arteries should be elevated. Restoration of physiological blood flow by removing pathologic anatomy should be performed. Since there is no correlation between the size of a visceral aneurysm and the risk of rupture, having a high postrupture mortality, pancreaticoduodenal artery aneurysms should be treated even if asymptomatic. Surgical treatment remains the mainstay treatment of the Dunbar syndrome complicated by visceral aneurysms.
DOI: 10.6084/m9.figshare.11674155.v1
title: Inferior pancreaticoduodenal artery aneurysms and Dunbar syndrome. Experience with the open surgery

description: Introduction: Median arcuate ligament or Dunbar syndrome is a rare vascular disorder causing celiac trunk stenosis or occlusion due to the extrinsic compression by the median arcuate ligament. A visceral aneurysm may develop as a complication. Patients and methods: We experienced an inferior pancreaticoduodenal artery aneurysm presentation in two female patients with the median arcuate syndrome previously diagnosed. One patient presented with postprandial abdominal pain and weight loss and the other one was asymptomatic. Results: We described our experience with the both patients being successfully treated surgically. Conclusions: Awareness of possible repercussions of the celiac trunk stenosis to peripancreatic arteries should be elevated. Restoration of physiological blood flow by removing pathologic anatomy should be performed. Since there is no correlation between the size of a visceral aneurysm and the risk of rupture, having a high postrupture mortality, pancreaticoduodenal artery aneurysms should be treated even if asymptomatic. Surgical treatment remains the mainstay treatment of the Dunbar syndrome complicated by visceral aneurysms.
DOI: 10.6084/m9.figshare.11674104
title: Dataset from Response to resources and parasites depends on health status in extensively grazed sheep

description: Dataset used for glmm's containing FEC and FAMACHA scores for each sheep, tick abundance at each sampling site as well as number of recordings of each sheep, mean NDVI and mean steepness in buffer zones of 30m, 50m, 75m and 100m around the tick sampling sites.
DOI: 10.6084/m9.figshare.11674104.v1
title: Dataset from Response to resources and parasites depends on health status in extensively grazed sheep

description: Dataset used for glmm's containing FEC and FAMACHA scores for each sheep, tick abundance at each sampling site as well as number of recordings of each sheep, mean NDVI and mean steepness in buffer zones of 30m, 50m, 75m and 100m around the tick sampling sites.
DOI: 10.6084/m9.figshare.11674020
title: Tuliptree_petal_RNAseq

description: Liriodendron tulipifera petal and sepal RNA-seq results, including cds, protein and annotation files.
DOI: 10.6084/m9.figshare.11673990
title: init cond p=1e7, w=5e-3

description: init cond p=1e7, w=5e-3
DOI: 10.6084/m9.figshare.11673990.v1
title: init cond p=1e7, w=5e-3

description: init cond p=1e7, w=5e-3
DOI: 10.6084/m9.figshare.11673900
title: Livestock grazing abandonment reduces soil microbial activity and carbon storage in a Mediterranean Dehesa

description: Dataset of "Livestock grazing abandonment reduces soil microbial activity and carbon storage in a Mediterranean Dehesa". Applied Soil Ecology.
DOI: 10.6084/m9.figshare.11673717
title: ProcessData_cleaned

description: This folder contains improved versions of eye and head movement signals. This data is not published as part of the original publication, Gaze-in-Wild, as is offered in good faith for researchers to build upon.<br>For more information, please visit: http://www.cis.rit.edu/~rsk3900/gaze-in-wild/<br>
DOI: 10.6084/m9.figshare.11673696
title: LabelData

description: These files contains labels associated the Gaze-In-Wild project. For more information, please visit: http://www.cis.rit.edu/~rsk3900/gaze-in-wild/<br>
DOI: 10.6084/m9.figshare.11673645
title: ProcessData

description: This folder contains [ProcessData], a matlab structure file which contains information pertaining to the Gaze-In-Wild project. For more information, please visit: http://www.cis.rit.edu/~rsk3900/gaze-in-wild/<br>
DOI: 10.6084/m9.figshare.11673624
title: Supplementary Material for: Exome Sequencing for Prenatal Detection of Genetic Abnormalities in Fetal Ultrasound Anomalies: An Economic Evaluation

description: <b><i>Introduction:</i></b> In light of the prospective Prenatal Assessment of Genomes and Exomes (PAGE) study, this paper aimed to determine the additional costs of using exome sequencing (ES) alongside or in place of chromosomal microarray (CMA) in a fetus with an identified congenital anomaly. <b><i>Methods:</i></b> A decision tree was populated using data from a prospective cohort of women undergoing invasive diagnostic testing. Four testing strategies were evaluated: CMA, ES, CMA followed by ES (“stepwise”); CMA and ES combined. <b><i>Results:</i></b> When ES is priced at GBP 2,100 (EUR 2,407/USD 2,694), performing ES alone prenatally would cost a further GBP 31,410 (EUR 36,001/USD 40,289) per additional genetic diagnosis, whereas the stepwise would cost a further GBP 24,657 (EUR 28,261/USD 31,627) per additional genetic diagnosis. When ES is priced at GBP 966 (EUR 1,107/USD 1,239), performing ES alone prenatally would cost a further GBP 11,532 (EUR 13,217/USD 14,792) per additional genetic diagnosis, whereas the stepwise would cost a further additional GBP 11,639 (EUR 13,340/USD 14,929) per additional genetic diagnosis. The sub-group analysis suggests that performing stepwise on cases indicative of multiple anomalies at ultrasound scan (USS) compared to cases indicative of a single anomaly, is more cost-effective compared to using ES alone. <b><i>Discussion/Conclusion:</i></b> Performing ES alongside CMA is more cost-effective than ES alone, which can potentially lead to improvements in pregnancy management. The direct effects of test results on pregnancy outcomes were not examined; therefore, further research is recommended to examine changes on the projected incremental cost-effectiveness ratios.
DOI: 10.6084/m9.figshare.11673636
title: Micropropagation of Astragalus geminiflorus

description: Dataset and dataset statistical analysis for treatments involving the use of plant growth regulators PGRs and their impact on new shoot formation and lenght in Astragalus geminiflorus explants for in vitro micropropagation. Dataset and analysis for rooting also included.
DOI: 10.6084/m9.figshare.11673636.v1
title: Micropropagation of Astragalus geminiflorus

description: Dataset and dataset statistical analysis for treatments involving the use of plant growth regulators PGRs and their impact on new shoot formation and lenght in Astragalus geminiflorus explants for in vitro micropropagation. Dataset and analysis for rooting also included.
DOI: 10.6084/m9.figshare.11673624.v1
title: Supplementary Material for: Exome Sequencing for Prenatal Detection of Genetic Abnormalities in Fetal Ultrasound Anomalies: An Economic Evaluation

description: <b><i>Introduction:</i></b> In light of the prospective Prenatal Assessment of Genomes and Exomes (PAGE) study, this paper aimed to determine the additional costs of using exome sequencing (ES) alongside or in place of chromosomal microarray (CMA) in a fetus with an identified congenital anomaly. <b><i>Methods:</i></b> A decision tree was populated using data from a prospective cohort of women undergoing invasive diagnostic testing. Four testing strategies were evaluated: CMA, ES, CMA followed by ES (“stepwise”); CMA and ES combined. <b><i>Results:</i></b> When ES is priced at GBP 2,100 (EUR 2,407/USD 2,694), performing ES alone prenatally would cost a further GBP 31,410 (EUR 36,001/USD 40,289) per additional genetic diagnosis, whereas the stepwise would cost a further GBP 24,657 (EUR 28,261/USD 31,627) per additional genetic diagnosis. When ES is priced at GBP 966 (EUR 1,107/USD 1,239), performing ES alone prenatally would cost a further GBP 11,532 (EUR 13,217/USD 14,792) per additional genetic diagnosis, whereas the stepwise would cost a further additional GBP 11,639 (EUR 13,340/USD 14,929) per additional genetic diagnosis. The sub-group analysis suggests that performing stepwise on cases indicative of multiple anomalies at ultrasound scan (USS) compared to cases indicative of a single anomaly, is more cost-effective compared to using ES alone. <b><i>Discussion/Conclusion:</i></b> Performing ES alongside CMA is more cost-effective than ES alone, which can potentially lead to improvements in pregnancy management. The direct effects of test results on pregnancy outcomes were not examined; therefore, further research is recommended to examine changes on the projected incremental cost-effectiveness ratios.
DOI: 10.6084/m9.figshare.11673615
title: Supplementary Material for: Effects of Skip-Logic on the Validity of Dimensional Clinical Scores: A Simulation Study

description: Structured assessment of clinical phenotypes is a burdensome procedure, largely due to the time required. One method to alleviate this is “skip-logic,” which allows for portions of an interview to be skipped if initial (“screen”) items are not endorsed. The bias that skip-logic introduces to resultant continuous scores is unknown and can be explored using Item Response Theory. Interview response data were simulated while varying 5 characteristics of the measures: number of screen items, difficulty (clinical severity) of the screens, difficulty of non-screen items, shape of the trait distribution, and range of discrimination parameters. The number of simulations and examinees were held constant at 2,000 and 10,000, respectively. A criterion variable correlating 0.80 with the measured trait was also simulated, and the outcome of interest was the difference between the correlations of the criterion variable and the two estimated scores (with and without skip-logic). Effects of the simulation conditions on this outcome were explored using ANOVA. All main effects and interactions were significant. The largest 2-way interaction was between number of screen items and average item discrimination, such that the number of screen items had a large effect on bias only when discrimination parameters were low. This, among other interactions explored here, suggests that skip-logic can bias results using continuous scores; however, the effects of this bias are usually inconsequential. Skip-logic in clinical assessments can introduce bias in continuous sum scores, but this bias can usually be ignored.
DOI: 10.6084/m9.figshare.11673597
title: Supplementary Material for: Association between Aldose Reductase Gene C(-106)T Polymorphism and Diabetic Retinopathy: A Systematic Review and Meta-Analysis

description: Controversial results regarding the associations between aldose reductase (AR) genetic polymorphisms and diabetic retinopathy (DR) have been reported for many years. The present meta-analysis was performed to clarify the effects of the AR gene C(-106)T polymorphism on DR risk. The PubMed, Web of Sciences, Cochrane library, EMBASE, Chinese National Knowledge Infrastructure, and Wan Fang databases were extensively searched in Chinese to select relevant studies with an updated date of April 25, 2018. The Newcastle-Ottawa Scale (NOS) was applied to assess quality. The random-effects model was applied to calculate the pooled OR and 95% CI. This meta-analysis identified 23 studies with an average score of 7.52 for NOS analysis, including 4,313 DR cases and 5,128 diabetes mellitus (DM) control cases. In the overall analysis, a significant association between the AR gene C(-106)T polymorphism and DR susceptibility was found. In subgroups stratified by DM type and ethnicity, significantly increased risks for DR were found in DM type 1, East Asian populations, and Middle Eastern populations. Compared with DR control cases, the following associations were found: T vs. C: OR 0.91, 95% CI 0.85–0.97, <i>I</i><sup>2</sup> = 72.9%; CT + TT vs. CC: OR 0.75, 95% CI 0.68–0.81, <i>I</i><sup>2</sup> = 86.7%; and CT vs. CC: OR 0.86, 95% CI 0.78–0.94, <i>I</i><sup>2</sup> = 70.5%. The results of this meta-analysis showed a significant association between the AR gene C(-106)T polymorphism and susceptibility to DR in DM patients. DM patients with allele T and CT+TT genotype of the AR gene may have a lower risk of DR.
DOI: 10.6084/m9.figshare.11673597.v1
title: Supplementary Material for: Association between Aldose Reductase Gene C(-106)T Polymorphism and Diabetic Retinopathy: A Systematic Review and Meta-Analysis

description: Controversial results regarding the associations between aldose reductase (AR) genetic polymorphisms and diabetic retinopathy (DR) have been reported for many years. The present meta-analysis was performed to clarify the effects of the AR gene C(-106)T polymorphism on DR risk. The PubMed, Web of Sciences, Cochrane library, EMBASE, Chinese National Knowledge Infrastructure, and Wan Fang databases were extensively searched in Chinese to select relevant studies with an updated date of April 25, 2018. The Newcastle-Ottawa Scale (NOS) was applied to assess quality. The random-effects model was applied to calculate the pooled OR and 95% CI. This meta-analysis identified 23 studies with an average score of 7.52 for NOS analysis, including 4,313 DR cases and 5,128 diabetes mellitus (DM) control cases. In the overall analysis, a significant association between the AR gene C(-106)T polymorphism and DR susceptibility was found. In subgroups stratified by DM type and ethnicity, significantly increased risks for DR were found in DM type 1, East Asian populations, and Middle Eastern populations. Compared with DR control cases, the following associations were found: T vs. C: OR 0.91, 95% CI 0.85–0.97, <i>I</i><sup>2</sup> = 72.9%; CT + TT vs. CC: OR 0.75, 95% CI 0.68–0.81, <i>I</i><sup>2</sup> = 86.7%; and CT vs. CC: OR 0.86, 95% CI 0.78–0.94, <i>I</i><sup>2</sup> = 70.5%. The results of this meta-analysis showed a significant association between the AR gene C(-106)T polymorphism and susceptibility to DR in DM patients. DM patients with allele T and CT+TT genotype of the AR gene may have a lower risk of DR.
DOI: 10.6084/m9.figshare.11673582
title: Supplemental Figures and Spreadsheet: Altered renal hemodynamics is associated with glomerular lipid accumulation in obese Dahl salt-sensitive leptin receptor mutant rats

description: <b>Supplemental Figures and Spreadsheet with Tables: Altered renal hemodynamics is associated with glomerular lipid accumulation in obese Dahl salt-sensitive leptin receptor mutant rats</b>
DOI: 10.6084/m9.figshare.11673582.v2
title: Supplemental Figures and Spreadsheet: Altered renal hemodynamics is associated with glomerular lipid accumulation in obese Dahl salt-sensitive leptin receptor mutant rats

description: <b>Supplemental Figures and Spreadsheet with Tables: Altered renal hemodynamics is associated with glomerular lipid accumulation in obese Dahl salt-sensitive leptin receptor mutant rats</b>
DOI: 10.6084/m9.figshare.11673579
title: Final data for "Soil Greenhouse Gas Emissions under Different Land-Use Types in Savanna Ecosystems of Kenya"

description: Final data used in the study "Soil Greenhouse Gas Emissions under Different Land-Use Types in Savanna Ecosystems of Kenya".
DOI: 10.6084/m9.figshare.11673582.v1
title: Supplemental Figures and Spreadsheet: Altered renal hemodynamics is associated with glomerular lipid accumulation in obese Dahl salt-sensitive leptin receptor mutant rats

description: <b>Supplemental Figures and Spreadsheet with Tables: Altered renal hemodynamics is associated with glomerular lipid accumulation in obese Dahl salt-sensitive leptin receptor mutant rats</b>
DOI: 10.6084/m9.figshare.11673579.v1
title: Final data for "Soil Greenhouse Gas Emissions under Different Land-Use Types in Savanna Ecosystems of Kenya"

description: Final data used in the study "Soil Greenhouse Gas Emissions under Different Land-Use Types in Savanna Ecosystems of Kenya".