cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/c5254105a39082e64f09c0c4ad8066b0
title: SBC LTER: Ocean: HFR-derived surface flow metrics, surface water retention times, and related factors in the Santa Barbara Channel (2012-2019)

description: This data package include three files: 1. daily maps of
 High-Frequency Radar (HFR) measured surface currents, indices of
 mesoscale eddy locations, and local retention times on a 2km grid;
 2. monthly time series of wind stress, alongshore pressure
 gradient, surface current EOF principal components, vorticity,
 eddy area, eddy presence, and spatially averaged retention times
 from January 2012 to December 2019; 3. A MATLAB script for
 plotting the maps and timeseries. These data were processed in
 order to investigate the drivers of surface water retention in the
 Santa Barbara Channel, CA, details of which are available in the
 study:
 
 
 Brokaw, R.J., D.A. Siegel, and L. Washburn. Physical Drivers of
 Surface Water Retention in the Santa Barbara Channel. [In
 preparation for Journal of Geophysical Research:
 Oceans.]
DOI: 10.6084/m9.figshare.25103528
title: Supplementary Material for: Varying impact of lenvatinib or sorafenib therapy on skeletal muscle loss in patients with hepatocellular carcinoma

description: Background: Lenvatinib and sorafenib are key therapeutic agents for hepatocellular carcinoma. However, there are no useful biomarkers for selecting molecular-targeted agents (MTAs). Skeletal muscle volume is associated with the clinical outcomes in these patients. We investigated the effects of lenvatinib and sorafenib on the skeletal muscles of patients with HCC.
Methods: We evaluated the impact of skeletal muscle changes over a 3-month period for each MTA (n = 117; lenvatinib/sorafenib, 45/72). The skeletal muscle mass index (SMI) was measured at the third lumbar vertebra. Furthermore, we evaluated the direct effect of each MTA on primary human skeletal muscle cells by estimating muscle protein synthesis using western blot analysis. 
Results: The median change in SMI was -0.7% (p = 0.959) and -5.9% (p &lt;0.001) for the lenvatinib and sorafenib groups, respectively. Sorafenib had a greater effect on skeletal muscle loss than lenvatinib (p &lt; 0.001). Additionally, SMI significantly decreased in the sorafenib group regardless of initial skeletal muscle volume (p &lt; 0.001), whereas no significant differences were observed in the lenvatinib group. Sorafenib therapy (odds ratio [OR], 2.98; p = 0.023) and non-muscle depletion (OR, 3.31; p = 0.009) were associated with a decreased SMI. In vitro analysis showed that sorafenib negatively affected muscle synthesis compared to lenvatinib.
Conclusions: Sorafenib may have a more negative effect on skeletal muscle than lenvatinib.
DOI: 10.6084/m9.figshare.25592451
title: Data of surface UHI, urban size, and fractal dimension

description: The table contains the surface UHI intensity, box-counting fractal dimension, urban size, and the gravitational urban morphology index using gamma values ranging from 0 to 4.0, with a step of 0.01. See the "ReadMe.txt" file for the meaning of the column names.
DOI: 10.6084/m9.figshare.25918495.v3
title: <b>Detection of yellow mosaic virus resistance in Soybean (</b><b><i>Glycine max</i></b><b> L.) genotypes (Datasets)</b>

description: Soybean leaves were scored as highly resistant, moderately susceptible, and highly susceptible based on their symptoms. Highly susceptible plants had yellow mosaic virus symptoms on more than 50% of the plant leaves, whereas, highly resistant plants showed no symptoms at all.Not every genotype of soybean produces high-quality amplification for us. Polymorphism information content (PIC) varied between polymorphic markers; it was highest (0.61) in BARCSOYSSR_13_1173 and lowest (0.11) in BARCSOYSSR_13_1115. The following is a list of SSR markers along with associated PIC values.Twenty genotypes of soybeans that were obtained from the germplasm of Bangladesh Agricultural University's genetics and plant breeding farm laboratory were checked for the presence of the soybean yellow mosaic virus (YMV).The relationship betweeen the percentage of infection and AUDPC (Area Under Disease Progress Curve) for each genotype is derived from the scores at 7, 10, and 14 dpi (days post-inoculation) following virus injection. Susceptibility was shown by the high value of % infection and AUDPC, whereas the low value indicated resistance. Therefore, it is possible to classify the following as extremely resistant: Davis, Lokon, G-10180, Asset 93-19-5, G-2120; moderately susceptible: AGS-66; highly susceptible: TAINANS; and highly resistant: MINA-HAI, Shohag, HIHS-WIHS, BS-3, BRAGG.
DOI: 10.13026/b95v-ff39
title: MIMIC-IV-ECG: Diagnostic Electrocardiogram Matched Subset

description: The MIMIC-IV-ECG module contains approximately 800,000 diagnostic
electrocardiograms across nearly 160,000 unique patients. These diagnostic
ECGs use 12 leads and are 10 seconds in length. They are sampled at 500 Hz.
This subset contains all of the ECGs for patients who appear in the MIMIC-IV
Clinical Database. When a cardiologist report is available for a given ECG, we
provide the needed information to link the waveform to the report. The
patients in MIMIC-IV-ECG have been matched against the MIMIC-IV Clinical
Database, making it possible to link to information across the MIMIC-IV
modules.
DOI: 10.15468/dl.jeycvx
title: Occurrence Download

description: A dataset containing 61988 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Pteridaceae"
 ]
}

 The dataset includes 61988 records from 253 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0415423-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.97042
title: Sedimentation rates of Hole 38-342

description: compiled and calculated from various DSDP data sources
DOI: 10.24432/c5bc8t
title: Daily Demand Forecasting Orders
DOI: 10.5066/p1ct2cw3
title: Roundtail Chub and Flannelmouth Sucker movement data within the Blacks Fork subbasin, Wyoming 2019-2021

description: The dataset includes Roundtail Chub and Flannelmouth Sucker detections at passive integrated transponder (PIT) tag antenna systems. We installed nine instream Biomark PIT-tag antenna systems (five 24-meter and four 9-meter antennas) in a pass-over orientation throughout the Blacks Fork subbasin. In addition to the fixed antennas, we used a Biomark inflatable antenna and two Biomark submersible PIT-tag antenna systems to increase detections.
DOI: 10.5281/zenodo.10066878
title: Determination of borehole tiltmeter orientation using earth tides

description: These data are used in the article Determination of borehole tiltmeter orientation using earth tides. LSBB 2012, LSBB 2021 and ETNA 2022 datasets are measured by optical borehole tiltmeters with a sampling frequency of 1 Hz. They contain four columns: number, channel d1, channel d2, and channel d3. ETNA 2023 dataset is measured by LILY tiltmeter, comprising three columns: time, ux, and uy.
DOI: 10.5281/zenodo.10282700
title: Dataset and Code for Manuscript "Cell sorting based on pulse shapes from angle resolved detection of scattered light"

description: Dataset and code for the cell cycle analysis and cluster selection for sorting:



ReadMe file with explanations of the data set and analysis

Python scripts for converting the data and to reproduce the sort cluster selection

binary data files containing pulse shapes and wavelet transform coefficients

FSC data files containing the respective common flow cytometry parameters

text files with event indices that represent the gating
DOI: 10.5281/zenodo.10580177
title: Calibration data for Climate Change Tower temperature sensors - may 2017

description: Calibration data for the temperature sensors hosted at Climate Change Tower in Ny-Ålesund, Svalbard, during May 2017. Each namefile contains the temperature point (e.g. m25 is -25 °C, while p5 is +5 °C) and the sensor type ("ref" for reference, "DUT" for Device under test).

Reference files contain data for the 2 reference sensors employed, while DUT files contain data for the 4 CCT sensors.
DOI: 10.5281/zenodo.10679387
title: 2020 Masbate surface rupture drone data

description: The drone dataset comprises orthomosaic photos and digital elevation models generated from multiple flight missions utilizing a DJI Phantom 4 Pro. These missions were specifically carried out along the surface rupture of the 2020 Masbate earthquake to aid mapping efforts across flat terrains. The drone photos were processed using Agisoft Metashape.
DOI: 10.5281/zenodo.11473281
title: Sliding trajectories of strained Graphullerene/graphene and Graphullerene/h-BN heterojunction

description: This dataset contains the sliding trajectories of strained GF/graphene and GF/h-BN along three directions (including total energy and atomic coordinates in extend xyz format) described in the manuscript "Superlubric Graphullerene" (to be submitted).
DOI: 10.5281/zenodo.4314872
title: Amory et al. (2021), Geoscientific Model Development : data, model outputs and source code

description: <strong>Data and model outputs for the replication of the analysis made in:</strong><br> (see the published version of this article in Geoscientific Model Development, 2021 - please cite this version if you use these data)<br> C. Amory, C. Kittel, L. Le Toumelin, C. Agosta, A. Delhasse, V. Favier, and X. Fettweis: Performance of MAR (v3.11) in simulating the drifting-snow climate and surface mass balance of Adelie Land, East Antarctica, Geoscientific Model Development, accepted, 2021. See README.txt for a full description of the dataset content Please contact me at amory.charles@live.fr if you need other half-hourly outputs or for more details on the dataset
DOI: 10.5281/zenodo.4635977
title: Supplementary dataset: Local Number Fluctuations in Hyperuniform and Nonhyperuniform Systems: Higher-Order Moments and Distribution Functions

description: Supplementary dataset of the publication "Local Number Fluctuations in Hyperuniform and Nonhyperuniform Systems: Higher-Order Moments and Distribution Functions" by the same authors: S. Torquato, J. Kim, M. A. Klatt. <em>Phys. Rev. X</em> <strong>11</strong>, 021028 (2021)<br> https://link.aps.org/doi/10.1103/PhysRevX.11.021028
description: {"references": ["S. Torquato, J. Kim, M. A. Klatt. Phys. Rev. X 11, 021028 (2021) https://link.aps.org/doi/10.1103/PhysRevX.11.021028"]}
DOI: 10.5281/zenodo.49583
title: Innovations In Scholarly Communication - Data Of The Global 2015-2016 Survey

description: Innovations in scholarly communication - data of the global 2015-2016 survey.

This data set contains:


	Full raw (anonymized) and cleaned data files of the 2015-2016 global Survey on Innovations in Scholarly Communication. Data are in xls format (raw and cleaned) and csv format (only for cleaned data as the raw data contain non-Roman script).
	Survey questionnaires for 7 languages (zipped PDFs)
	Variable list (xls)
	Readme file (txt)


The data files contain &gt;3,000,000 cells, and thus cannot be opened in their entirety in Google Drive.

Many new websites and online tools have come into existence to support<br>
scholarly communication in all phases of the research workflow. To what extent<br>
researchers are using these and more traditional tools has been largely<br>
unknown. This 2015-2016 survey aimed to fill that gap. Its results may help<br>
decision making by stakeholders supporting researchers and may also help<br>
researchers wishing to reflect on their own online workflows. In addition,<br>
information on tools usage can inform studies of changing research workflows.<br>
The online survey employed an open, non-probability sample. A largely<br>
self-selected group of 20663 researchers, librarians, editors, publishers and<br>
other groups involved in research took the survey, which was available in seven<br>
languages. The survey was open from May 10, 2015 to February 10, 2016. It<br>
captured information on tool usage for 17 research activities, stance towards<br>
open access and open science, and expectations of the most important<br>
development in scholarly communication. Respondents’ demographics<br>
included research roles, country of affiliation, research discipline and year of<br>
first publication.

A full description of data collection, survey response and methodology is in a data publication in F1000 Research:

Kramer, Bianca & Jeroen Bosman (2016) Innovations in scholarly communication - global survey on research tool usage. F1000 Research. DOI:10.12688/f1000research.8414.1

Contact:

Jeroen Bosman: http://orcid.org/0000-0001-5796-2727 / j.bosman@uu.nl

Bianca Kramer: http://orcid.org/0000-0002-5965-6560 / b.m.r.kramer@uu.nl
DOI: 10.5281/zenodo.7665117
title: Optical Distortion Matrices Deep Inside A Human Cornea

description: Raw experimental data related to the article: 

Harnessing forward multiple scattering for optical imaging deep inside an opaque medium, Nature Commun., 15:7349 (2024)

Authors: Ulysse Najar , Victor Barolle , Paul Balondrade , Mathias Fink , Claude Boccara , Alexandre Aubry

Contents:

- acquired distortion matrices in descanned focused bases, for several depths within the corneal sample

- experimental parameters and features
DOI: 10.5281/zenodo.8213361
title: Surface rupture data associated with the 2020 Mw 6.6 Masbate earthquake, Philippines

description: The dataset comprises vector files depicting the delineated surface rupture associated with the 2020 Mw 6.6 Masbate earthquake, along with field measurements recorded in a spreadsheet. Mapping of the surface rupture was conducted using ground and drone surveys. The field measurements, taken with tape measures, were supplemented with measurements derived from drone orthophotos.
DOI: 10.5439/1756632
title: mfrsr7nchaod1mich

description: The mfraod vap takes data from the mfrsr7nch datastream and calculations total and aerosol optical depths, plus auxiliary fields.
DOI: 10.5517/cc1jn89r
title: CCDC 1419654: Experimental Crystal Structure Determination

description: Related Article: R. John Errington, Thompson Izuagie, Paul G. Waddell|2015|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc216xry
title: CCDC 1883490: Experimental Crystal Structure Determination

description: Related Article: Brian Skelton|2019|CSD Communication|||
DOI: 10.6084/m9.figshare.24574495
title: An improved dataset of force fields, electronic and physicochemical descriptors of metabolic substrates

description: <i>In silico</i> prediction of xenobiotic metabolism is an important strategy to accelerate the drug discovery process, as candidate compounds often fail in clinical phases due to their poor pharmacokinetic profiles. Here we present Meta<sup>QM</sup>, a dataset of quantum-mechanical (QM) optimized metabolic substrates, including force field parameters, electronic and physicochemical properties. Meta<sup>QM</sup> comprises 2054 metabolic substrates extracted from the MetaQSAR database. We provide QM-optimized geometries, General Amber Force Field (FF) parameters for all studied molecules, and an extended set of structural and physicochemical descriptors as calculated by DFT and PM7 methods. The generated data can be used in different types of analysis. FF parameters can be applied to perform classical molecular mechanics calculations as exemplified by the validating molecular dynamics simulations reported here. The calculated descriptors can represent input features for developing improved predictive models for metabolism and drug design, as exemplified in this work. Finally, the QM-optimized molecular structures are valuable starting points for both ligand- and structure-based analyses such as pharmacophore mapping and docking simulations.
DOI: 10.6084/m9.figshare.25478896
title: Data for "Force and the alpha-C-terminal domains bias RNA polymerase recycling" by Jin Q. et al.

description: Data and codes for replicating results in "Force and the alpha-C-terminal domains bias RNA polymerase recycling" by Qian et al.
DOI: 10.6084/m9.figshare.25634979
title: Supplementary Material for: Malnutrition Prevalence and Nutrient Intakes of Indonesian Older Adults in Institutionalized Care Setting: A Systematic Review of Observational Studies

description: Introduction: Data on the prevalence of malnutrition and nutrient intakes among Indonesian older aduls in institutionalized care setting are scattered and scarce. Thus, we conducted a systematic review of published and grey literature to estimate (1) the prevalence of malnutrition, (2) the level and distribution of habitual energy and nutrient intakes, and (3) the prevalence of inadequacy of energy and nutrient intakes among hospitalized and institutionalized older adults in Indonesia.
Methods: This systematic review was written following the Preferred Reporting Items for Systematic Reviews and Meta-Analysis (PRISMA) checklist. The population of this review was Indonesian older adults in institutionalized care settings, including hospital ward, orphanages, nursing homes, residential facilities, and rehabilitation centers . Malnutrition was assessed using body mass index, the mini nutritional assessment (MNA) score, or the subjective global assessment (SGA) score. The dietary intakes (from food recalls, food records, or food frequency questionnaire) were compared with the Indonesian recommended daily allowances (RDAs) for people aged 65 to 80. The prevalence of inadequacy was calculated using two-thirds of the RDA as a proxy for the estimated average requirement (EAR).
Results: The search yielded 330 studies from electronic databases, resulting in fifteen eligible studies. One report was obtained from an unpublished study. Based on the JBI criteria, most studies had low risk of bias and represented the target population. The prevalence of malnutrition in hospital, nursing home, and other institutionalized care ranged from 6.5%-48.3% in hospitals and 3.2%-61.0% in other institutionalized care units. In the hospital setting, there was a high prevalence of inadequacies for all nutrients, particularly protein (20%), calcium (more than 90%), and vitamin D intakes (more than 50%). In nursing homes, these proportions were exceptionally high for protein (66%) and calcium and vitamin D intakes (almost 100%).
Conclusion: The high risk of malnutrition Indonesian older adults in institutionalized care setting is pronounced, along with poor intakes of macronutrients and micronutrients in both settings.
DOI: 10.15468/dl.xt36d4
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Magnaporthe oryzae B.C.Couch"
 ]
}

 The dataset includes 101 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011427-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.geuz69
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Ovis aries Merinolandschaf)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003193-230828120925497/datasets/export for details.
DOI: 10.15468/dl.cxc9ra
title: Occurrence Download

description: A dataset listing the 7375 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fish Collection NRM"
 ]
}

 The dataset's 7375 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209165-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3eudu
title: Occurrence Download

description: A dataset containing 3581 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Colombia",
 "Country is Ecuador",
 "Country is Venezuela (Bolivarian Republic of)",
 "Country is Peru"
 ]
 },
 "Geometry POLYGON((-180 -6,180 -6,180 11,-180 11,-180 -6))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Viola dombeyana DC. ex Ging.",
 "TaxonKey is Verbesina baccharidea S.F.Blake",
 "TaxonKey is Valeriana vetasana Killip",
 "TaxonKey is Valeriana stenophylla Killip",
 "TaxonKey is Valeriana microphylla Kunth",
 "TaxonKey is Valeriana bracteata Benth.",
 "TaxonKey is Valeriana aretioides Kunth",
 "TaxonKey is Valeriana alypifolia Kunth",
 "TaxonKey is Valeriana adscendens Turcz.",
 "TaxonKey is Vaccinium corymbodendron Ruiz & Pav. ex Dunal",
 "TaxonKey is Trisetum foliosum Swallen",
 "TaxonKey is Ternstroemia meridionalis Mutis ex L.fil.",
 "TaxonKey is Symplocos theiformis (L.fil.) Gürke",
 "TaxonKey is Stellaria serpyllifolia Willd.",
 "TaxonKey is Stelis pusilla Kunth",
 "TaxonKey is Stachys elliptica Kunth",
 "TaxonKey is Solanum brevifolium Humb. & Bonpl. ex Dunal",
 "TaxonKey is Senecio subruncinatus (Wedd.) Greenm."
 ]
 }
 ]
}

 The dataset includes 3581 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010276-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9qsdt
title: Occurrence Download

description: A dataset containing 293 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tuctoria greenei (Vasey) Reeder"
 ]
}

 The dataset includes 293 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024302-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s2yceb
title: Occurrence Download

description: A dataset containing 1929 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "GadmGid is ARG",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Melanerpes flavifrons (Vieillot, 1818)",
 "Year 2008-2021"
 ]
}

 The dataset includes 1929 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209162-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gphdmn
title: Occurrence Download

description: A dataset containing 1343226 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sayornis nigricans (Swainson, 1827)"
 ]
}

 The dataset includes 1343226 records from 218 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008747-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zkjtfq
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heteralepadidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 22 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024258-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.