DOI: 10.5281/zenodo.10463762
title: RDS and Tab-Separated-Values Formats of Discover Life bee species guide and world checklist (Hymenoptera: Apoidea: Anthophila) as derived from Dorey et al. 2023 hash://sha256/56e0b3d68f221ee79d61f6da7bfdfad927d63ab86700b856d0a42a133841779c hash://md5/3bb89ee91f9b9a834e8b2725c3729cf5

description: To help extend the life and reach of the bee taxonomy embedded in Dorey et al. 2023, this publication includes a versioned copy of the original data as obtained on 2023-01-05 via https://open.flinders.edu.au/ndownloader/files/43331472 , as well as a tab-separated-values file as converted using an R script `rds2tsv.R` containing:

write.table(readRDS(xzfile('/dev/stdin')), sep='\t', na='', row.names=F, quote=F)

Citation

Please cite the original work as well as DiscoverLife when using this derived and re-packaged dataset: 

Dorey, J.B., Fischer, E.E., Chesshire, P.R. et al. A globally synthesised and flagged bee occurrence dataset and cleaning workflow. Sci Data 10, 747 (2023). https://doi.org/10.1038/s41597-023-02626-w

Ascher, J. S. and J. Pickering. 2022. Discover Life bee species guide and world checklist (Hymenoptera: Apoidea: Anthophila). http://www.discoverlife.org/mp/20q?guide=Apoidea_species Draft-56, 21 August, 2022

 

Content




filename
content id


bee-taxonomy.rds
hash://sha256/76d8bac0e8ba193afa3278108d1aed0e08d4de1497d27ff22e5aaee3195232b4


bee-taxonomy.rds
hash://md5/9cd3653a3553202eb9a3fdd684a86b6e


bee-taxonomy.tsv
hash://sha256/b512043ddf994537ae1ed8068e44bf3a5cb9ab5e44ddf257cc82e67fe034e0e6


bee-taxonomy.tsv
hash://md5/ef136f270301830126deb3ced4da2383




Content Sample

Below are the first 10 rows of bee-taxonomy.tsv tab-delimited file output that can be downloaded below. The majority of the rows are derived from the Discover Life bee species guide and world checklist (Hymenoptera: Apoidea: Anthophila) (Asscher & Pickering 2022). Rows in the file include scientific name, taxonomic status, and higher taxonomy including subgenus. 




flags
taxonomic_status
source
accid
id
kingdom
phylum
class
order
family
subfamily
tribe
subtribe
validName
canonical
canonical_withFlags
genus
subgenus
species
infraspecies
authorship
taxon_rank
valid
notes


 
accepted
DiscoverLife
0
4
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Panurginae
Calliopsini
 
Acamptopoeum argentinum (Friese, 1906)
Acamptopoeum argentinum
Acamptopoeum argentinum
Acamptopoeum
 
argentinum
 
(Friese, 1906)
Species
TRUE
 


 
synonym
DiscoverLife
4
5
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Panurginae
Panurgini
Perditina
Perdita argentina Friese, 1906
Perdita argentina
Perdita argentina
Perdita
 
argentina
 
Friese, 1906
Species
FALSE
 


 
accepted
DiscoverLife
0
6
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Panurginae
Calliopsini
 
Acamptopoeum calchaqui Compagnucci, 2004
Acamptopoeum calchaqui
Acamptopoeum calchaqui
Acamptopoeum
 
calchaqui
 
Compagnucci, 2004
Species
TRUE
 


 
accepted
DiscoverLife
0
7
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Panurginae
Calliopsini
 
Acamptopoeum colombiense Shinn, 1965
Acamptopoeum colombiense
Acamptopoeum colombiense
Acamptopoeum
 
colombiense
 
Shinn, 1965
Species
TRUE
 


 
synonym
DiscoverLife
7
8
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Panurginae
Calliopsini
 
Acamptopoeum colombiensis_sic Shinn, 1965
Acamptopoeum colombiensis
Acamptopoeum colombiensis_sic
Acamptopoeum
 
colombiensis
 
Shinn, 1965
Species
FALSE
species _sic


 
accepted
DiscoverLife
0
9
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Panurginae
Calliopsini
 
Acamptopoeum fernandezi Gonzalez, 2004
Acamptopoeum fernandezi
Acamptopoeum fernandezi
Acamptopoeum
 
fernandezi
 
Gonzalez, 2004
Species
TRUE
 


 
accepted
DiscoverLife
0
10
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Panurginae
Calliopsini
 
Acamptopoeum inauratum (Cockerell, 1926)
Acamptopoeum inauratum
Acamptopoeum inauratum
Acamptopoeum
 
inauratum
 
(Cockerell, 1926)
Species
TRUE
 


 
synonym
DiscoverLife
10
11
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Panurginae
Panurgini
Camptopoeina
Camptopoeum (Acamptopoeum) inauratum Cockerell, 1926
Camptopoeum (Acamptopoeum) inauratum
Camptopoeum (Acamptopoeum) inauratum
Camptopoeum
Acamptopoeum
inauratum
 
Cockerell, 1926
Species
FALSE
 


 
accepted
DiscoverLife
0
12
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Panurginae
Calliopsini
 
Acamptopoeum melanogaster Compagnucci, 2004
Acamptopoeum melanogaster
Acamptopoeum melanogaster
Acamptopoeum
 
melanogaster
 
Compagnucci, 2004
Species
TRUE
 


 
accepted
DiscoverLife
0
13
Animalia
Arthropoda
Insecta
Hymenoptera
Andrenidae
Panurginae
Calliopsini
 
Acamptopoeum nigritarse (Vachal, 1909)
Acamptopoeum nigritarse
Acamptopoeum nigritarse
Acamptopoeum
 
nigritarse
 
(Vachal, 1909)
Species
TRUE
 




Please also credit the original dataset Dorey et al. 2023 when using this derived product.

Provenance

The versioned workflow was captured by Preston (Elliot et al. 2020, 2023) with identifier hash://sha256/56e0b3d68f221ee79d61f6da7bfdfad927d63ab86700b856d0a42a133841779c and history 

preston ls --anchor hash://sha256/56e0b3d68f221ee79d61f6da7bfdfad927d63ab86700b856d0a42a133841779c

 

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