cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25982/51640.53/1808273
title: Grant_Staphylococcus_succinus

description: A strain of Staphylococcus succinus was sampled from the floor of the basement of a house and isolated in an undergraduate classroom in Milwaukee, WI. Here, we report the draft genome sequence of this strain.
DOI: 10.48370/ofd/as6cif
title: Apodemus flavicollis - 165869, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1997-07-02, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/blj9or
title: Apodemus flavicollis - 131851, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1979-07-22, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/4lyqyi
title: Apodemus flavicollis - 156236, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1987-10-19, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/msboto
title: Apodemus flavicollis - 152024, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1985-10-02, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/ugbhc8
title: Apodemus flavicollis - 158710, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1989-10-26, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/fnpuis
title: Apodemus flavicollis - 156245, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1987-10-20, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/nemxdl
title: Apodemus flavicollis - 119077, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1976-07-12, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/1n2inx
title: Apodemus flavicollis - 163513, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1994-09-21, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/rqkx2t
title: Apodemus flavicollis - 87506, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1969-10-19, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/quugxo
title: Apodemus flavicollis - 76320, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-08-02, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/xoybc8
title: Apodemus flavicollis - 76504, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-08-08, in: Białowieża National Park, Poland. Material type:
DOI: 10.25982/97146.7/1817654
title: Narrative for Bioproject PRJNA623111

description: This Narrative is part of a collection used in publications focused on the microbial ecology of fjord sediment in the high Arctic, Svalbard. This paper took a genome-centric approach to uncover novel metabolic capabilities of the Acidobacteriota clade. Metagenomic data was coupled with amplicon sequencing of 16S rRNA and dissimilatory sulfite reductase (dsrB) genes, and transcripts (available under NCBI-Genbank Bioproject PRJNA623111), and gene expression analyses of tetrathionate-amended microcosms. This Narrative contains the metagenomic assemblies that were constructed within KBase for reproducibility. These include: stnF metagenome assembly stnAB metagenome assembly stnAC metagenome assembly These metagenome assemblies served as the launching point for an additional publication focused on a different clade of bacteria (Buongiorno et al., 2020). Link to that Narrative landing page here. Please cite: Flieder, Mathias, Joy Buongiorno, Craig W. Herbold, Bela Hausmann, Thomas Rattei, Karen G. Lloyd, Alexander Loy, and Kenneth Wasmund. "Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling." The ISME Journal (2021): 1-22.
DOI: 10.48370/ofd/a1bvz8
title: Apodemus flavicollis - 166658, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1997-10-01, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/0ir79m
title: Apodemus flavicollis - 12090, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-08-03, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/zyui85
title: Apodemus flavicollis - 137694, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1980-09-28, in: Białowieża National Park, Poland. Material type:
DOI: 10.25982/26409.220/1820944
title: Conditional Filamentation of Paraburkholderia elongata 5N - Data Container

description: Overview of Dataset<br>This narrative contains assemblies for all Paraburkholderia discussed in Karasz et al. 2022, where their phosphate-solubilizing activity was measured. Assemblies were downloaded from NCBI and annotated with Prokka. These genomes were created in many Narratives and collected here to be more accessible Note: The following naming of assemblies does not correspond with current taxonomic names for the following: Paraburkholderia 5N = Paraburkholderia elongata 5NT <br>Paraburkholderia 1N = Paraburkholderia solitsuga 1NT <br>Paraburkholderia vancouverensis = Paraburkholderia madseniana RL16
DOI: 10.48370/ofd/darojo
title: Apodemus flavicollis - 162245, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1992-07-27, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/bwnw8p
title: Apodemus flavicollis - 160392, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1990-09-25, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/igbflx
title: Apodemus flavicollis - 14619, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-09-21, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/7nmluk
title: Apodemus flavicollis - 125673, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1977-10-02, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/vsidxg
title: Apodemus flavicollis - 156325, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1987-10-30, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/a8vrlk
title: Apodemus flavicollis - 140194, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1981-09-27, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/fbm2vg
title: Apodemus flavicollis - 124206, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1977-04-23, in: Białowieża National Park, Poland. Material type:
DOI: 10.25982/71260.262/1827108
title: Omics-to-Reactive-Transport (ORT): A workflow linking genome-scale metabolic models with reactive transport codes

description: Motivation: Nutrient and contaminant behavior in the subsurface are governed by multiple coupled hydrobiogeochemical processes which occur across different temporal and spatial scales. Accurate description of macroscopic system behavior requires accounting for the effects of microscopic and especially microbial processes. Microbial processes mediate precipitation and dissolution and change aqueous geochemistry, all of which impacts macroscopic system behavior. As `omics data describing microbial processes is increasingly affordable and available, novel methods for using this data quickly and effectively for improved ecosystem models are needed. Results: We propose a workflow (`Omics to Reactive Transport – ORT) for utilizing metagenomic and environmental data to describe the effect of microbiological processes in macroscopic reactive transport models. This workflow utilizes and couples two open-source software packages: KBase (a software platform for systems biology) and PFLOTRAN (a reactive transport modeling code). We describe the architecture of ORT and demonstrate an implementation using metagenomic and geochemical data from a river system. Our demonstration uses microbiological drivers of nitrification and denitrification to predict nitrogen cycling patterns which agree with those provided with generalized stoichiometries. While our example uses data from a single measurement, our workflow can be applied to spatiotemporal metagenomic datasets to allow for iterative coupling between KBASE and PFLOTRAN. Live, interactive models, which incorporate the results from this narrative into a PFLOTRAN simulation, are available (without login) at https://pflotranmodeling.paf.subsurfaceinsights.com/pflotran-simple-model/.
DOI: 10.48370/ofd/llwgut
title: Apodemus flavicollis - 149012, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1983-10-10, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/4xjgxo
title: Apodemus flavicollis - 156289, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1987-10-29, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/xm1itt
title: Apodemus flavicollis - 157108, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1988-07-04, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/ejcwtt
title: Apodemus flavicollis - 40098, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-09-03, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/ufmjkg
title: Apodemus flavicollis - 72917, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-04-27, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/z5no54
title: Apodemus flavicollis - 113373, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1974-07-07, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/sro9ka
title: Apodemus flavicollis - 165957, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1997-07-04, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/zgmcsb
title: Apodemus flavicollis - 12076, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-08-03, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/obkm0c
title: Apodemus flavicollis - 124521, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1977-07-06, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/pvq8vz
title: Apodemus flavicollis - 46519, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1965-09-30, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/sdredf
title: Apodemus flavicollis - 99634, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1971-10-12, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/7n8odm
title: Apodemus flavicollis - 157459, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1988-09-14, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/dsemif
title: Apodemus flavicollis - 40389, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-10-09, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/y4e0fh
title: Apodemus flavicollis - 162808, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1993-07-25, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/hbyieh
title: Apodemus flavicollis - 35376, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-05-08, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/vgabzb
title: Apodemus flavicollis - 62698, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1967-05-09, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/11vk9b
title: Apodemus flavicollis - 125389, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1977-09-19, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/qcxzn4
title: Apodemus flavicollis - 11533, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-07-24, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/cmmgck
title: Apodemus flavicollis - 25833, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1961-09-07, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/6uw9vz
title: Apodemus flavicollis - 40395, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-10-09, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/mv3sca
title: Apodemus flavicollis - 116918, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1975-07-29, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/4oenir
title: Apodemus flavicollis - 147622, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1983-07-30, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/2vpxk1
title: Apodemus flavicollis - 40613, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-11-06, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/f11imz
title: Apodemus flavicollis - 72137, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-03-18, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/nxgm7a
title: Apodemus flavicollis - 167435, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1999-09-17, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/kna1sg
title: Apodemus flavicollis - 125536, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1977-09-25, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/m6ygvj
title: Apodemus flavicollis - 149238, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1983-10-21, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/9swffd
title: Apodemus flavicollis - 159742, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1990-07-13, in: Białowieża National Park, Poland. Material type:
DOI: 10.21227/zr89-mv26
title: N-S separated Ulysses data of polar (fast) solar winds for detection of the Sun global Alfven resonance

description: North/South-separated &lt;10nT magnetometer data from the 1994-2008 Ulysses space mission's samplings of polar (fast) solar winds, decimated. The set also includes data from the WIND space mission, the WSO terrestrial observatory (solar Mean Magnetic Field), and the WSO solar Polar magnetic Field, all used in the same research project.
DOI: 10.48370/ofd/pc7y7w
title: Apodemus flavicollis - 158686, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1989-10-10, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/yshcns
title: Apodemus flavicollis - 125771, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1977-10-06, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/s182iw
title: Apodemus flavicollis - 36474, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-08-04, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/m37eyy
title: Apodemus flavicollis - 156339, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1987-11-04, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/j2v6wg
title: Apodemus flavicollis - 157067, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1988-06-21, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/hitr4t
title: Apodemus flavicollis - 124624, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1977-07-17, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/d4mttz
title: Apodemus flavicollis - 167644, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1999-09-28, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/8tcbwk
title: Apodemus flavicollis - 152131, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1985-10-11, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/pqvzhs
title: Apodemus flavicollis - 149217, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1983-10-21, in: Białowieża National Park, Poland. Material type:
DOI: 10.25982/112150.61/1863566
title: Geochemical and sequencing data from Goff et. al. 2022
DOI: 10.48370/ofd/4np8uz
title: Apodemus flavicollis - 158578, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1989-09-29, in: Białowieża National Park, Poland. Material type: