cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/6wz8wyvsmz.1
title: Clinical and histopathological data from a 3-year real-world follow-up of dupilumab in palmoplantar pustulosis

description: Supplementary Table S1. Demographic and clinical information for palmoplantar pustulosis patients.
Note: These data were partially reported in our prior publication in Allergy (PMID: 38193274) and are included here for continuity.
Supplementary Figure S1. Representative H&E-stained sections from three patients with palmoplantar pustulosis (Patient No. 1–3), showing intraepidermal neutrophilic pustules, compact hyperkeratosis, psoriasiform hyperplasia, and superficial perivascular inflammatory infiltrates. All images at 10× magnification. Scale bar = 200 μm.
Supplementary Figure S2. Patient No. 2 with palmoplantar pustulosis (PPP). Serial clinical photographs at (A) baseline (pre-dupilumab, Month 0), (B) Month 18 on dupilumab, and (C) Month 36 on dupilumab, demonstrating sustained control of palmar (upper panels) and plantar (lower panels) involvement.
Supplementary Figure S3. Patient No. 10 with palmoplantar pustulosis (PPP). Serial clinical photographs at (A) baseline (pre-dupilumab, Month 0), (B) Month 18 on dupilumab, and (C) Month 36 on dupilumab, demonstrating sustained control of palmar (upper panels) and plantar (lower panels) involvement.
DOI: 10.17632/x5sf8gpr67
title: Therapeutic remodeling of the tuberculosis granuloma with 1-methyl-D-tryptophan enhances CD8+ T cell-macrophage interactions

description: Granulomas, the hallmark of tuberculosis (TB) disease, can both restrict Mycobacterium tuberculosis (Mtb) dissemination and impede its clearance. Recent studies indicate that indoleamine 2,3-dioxygenase (IDO1), an immunosuppressive metabolic enzyme, limits infiltration of activated T cells and can contribute to TB disease progression. Treatment with 1-methyl-D-tryptophan (D-1MT), a small molecule inhibitor that restores mTOR signaling, has been shown to improve immune responses Mtb-infected rhesus macaques. Here, we investigated the impact of D-1MT treatment on TB granuloma architecture using 30-plex high-dimensional issue imaging in rhesus macaques. By spatially mapping 13 distinct cell populations, we found D-1MT treatment corresponded with significantly increased infiltration CD8+ T cells into granulomas compared to untreated controls. Notably, these CD8+ T cells expressed markers of cell proliferation and cytotoxicity. D-1MT enhanced CD8+ T cell infiltration throughout the granuloma, with particularly pronounced effects in the myeloid core, where we observed significantly enhanced spatial interactions between macrophages and CD8+, but not CD4+ T cells. Our results demonstrate that: (i) effective intra-granulomatous Mtb control is associated with the close spatial proximity between CD8+ T cells and macrophages, a feature less abundant in uncontrolled pulmonary TB; (ii) IDO1 induction blocks CD8+ T cell infiltration and reduces T cell activation and proliferation; and (iii) therapeutic strategies, including D-1MT, that improve intra-granulomatous killing hold strong translational potential. 

This repository comprises the image data generated via MIBI-TOF for this study.
DOI: 10.15468/dl.cnd4md
title: Occurrence Download

description: A dataset containing 30428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.2.20_2",
 "OccurrenceStatus is Present",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 30428 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020249-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/x5sf8gpr67.1
title: Therapeutic remodeling of the tuberculosis granuloma with 1-methyl-D-tryptophan enhances CD8+ T cell-macrophage interactions

description: Granulomas, the hallmark of tuberculosis (TB) disease, can both restrict Mycobacterium tuberculosis (Mtb) dissemination and impede its clearance. Recent studies indicate that indoleamine 2,3-dioxygenase (IDO1), an immunosuppressive metabolic enzyme, limits infiltration of activated T cells and can contribute to TB disease progression. Treatment with 1-methyl-D-tryptophan (D-1MT), a small molecule inhibitor that restores mTOR signaling, has been shown to improve immune responses Mtb-infected rhesus macaques. Here, we investigated the impact of D-1MT treatment on TB granuloma architecture using 30-plex high-dimensional issue imaging in rhesus macaques. By spatially mapping 13 distinct cell populations, we found D-1MT treatment corresponded with significantly increased infiltration CD8+ T cells into granulomas compared to untreated controls. Notably, these CD8+ T cells expressed markers of cell proliferation and cytotoxicity. D-1MT enhanced CD8+ T cell infiltration throughout the granuloma, with particularly pronounced effects in the myeloid core, where we observed significantly enhanced spatial interactions between macrophages and CD8+, but not CD4+ T cells. Our results demonstrate that: (i) effective intra-granulomatous Mtb control is associated with the close spatial proximity between CD8+ T cells and macrophages, a feature less abundant in uncontrolled pulmonary TB; (ii) IDO1 induction blocks CD8+ T cell infiltration and reduces T cell activation and proliferation; and (iii) therapeutic strategies, including D-1MT, that improve intra-granulomatous killing hold strong translational potential. 

This repository comprises the image data generated via MIBI-TOF for this study.
DOI: 10.57830/2313048
title: Grassland Vegetation Monitoring Data for the Southern Plains Network (SOPN): 2022-2024 — Data Package (INTERNAL)

description: In the Great Plains, native grasslands have been lost or degraded to an alarming degree. They have been converted to agricultural land and urban areas, their hydrology has been altered, and they have lost function and biodiversity due to overgrazing, land fragmentation, fire suppression, and exotic species invasion. By 1997, researchers had already estimated that the loss of native prairie ranges from 80 to 99.9%, with the greatest losses occurring in the tallgrass prairie and oak savanna communities. Furthermore, only 71% of shortgrass prairie and 59% of mixed grass prairie were estimated to remain at that time. Changes in vegetation communities can lead to subsequent changes in faunal communities and natural processes. Land fragmentation can increase the chances of exotic plant species invasion and alter landscape-scale processes including species immigration and emigration in grasslands. Exotic plants can greatly alter ecosystem processes and displace native communities. Moreover, even native woody species such as Eastern red cedar, mesquite, Ashe juniper, pinion pine and juniper represent a threat as they invade/encroach and convert native grasslands to wood- and shrublands.

Grassland vegetation is the most widespread vegetation type occurring in the Southern Plains Inventory & Monitoring Network (SOPN). The parks at SOPN are dominated by mid- and shortgrass prairies that have been impacted by grazing, fire suppression, agriculture and invasive species. Individual restoration efforts of varying techniques and duration have been employed in the past in most of these parks with mixed results, and monitoring of these efforts has been minimal. This grassland vegetation monitoring protocol has been developed to inform park management of the status and trends of the overall health of their grasslands and to provide information on the effectiveness of restoration efforts.

Long-term ecological monitoring, while contributing to our empirical understanding of prairie communities, is integral to the proper management and protection of the lands entrusted to the National Park Service. Park resource managers require an effective plant community monitoring protocol to assess management strategy success in maintaining and/or restoring prairie plant community composition, structure, and diversity. Our monitoring strategy attempts to balance the immediate needs of managers for current information and the need for insight into the changes occurring in vegetation communities over time.
DOI: 10.17632/mh387hzsbx.1
title: RaagaDhvani-A novel curated Augmented Carnatic music Dataset

description: The RaagaDhvani dataset comprises high-quality audio recordings of solo flute renditions representing 11 selected Carnatic ragas: Bhairavi, Bilahari, Hamsadhwani, Saveri, Thodi, Anandabhairavi, Poorvikalyani, Gaanamurthe, Neelambari, Bhauli, and Dwijavanthi. The primary content includes audio data along with derived emotion annotations, augmentation variants, and associated metadata. All recordings were created by Prof. Vidushi Archana Priyadarshini and are released under the Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0) license.
DOI: 10.6084/m9.figshare.30220090
title: Subset of MERFISH mouse cortex dataset (Zhang, M., Eichhorn, S.W., Zingg, B. <i>et al.</i>)

description: Subset of MERFISH mouse cortex dataset pre-processed from Zhang, M., Eichhorn, S.W., Zingg, B. <i>et al.</i> (Nature. https://doi.org/10.1038/s41586-021-03705-x) for the purpose of demonstrating functionality of AMICI (Attention Mechanism Interpretation of Cell-cell Interactions). Specifically, the subset includes sample 4 from mouse 1 containing 6 slices containing around 33,831 total cells.
DOI: 10.6084/m9.figshare.30220090.v1
title: Subset of MERFISH mouse cortex dataset (Zhang, M., Eichhorn, S.W., Zingg, B. <i>et al.</i>)

description: Subset of MERFISH mouse cortex dataset pre-processed from Zhang, M., Eichhorn, S.W., Zingg, B. <i>et al.</i> (Nature. https://doi.org/10.1038/s41586-021-03705-x) for the purpose of demonstrating functionality of AMICI (Attention Mechanism Interpretation of Cell-cell Interactions). Specifically, the subset includes sample 4 from mouse 1 containing 6 slices containing around 33,831 total cells.
DOI: 10.5281/zenodo.14647902
title: Isocybus, SMNS_Hym_Pla_001004 (JA12), synchrotron tomography dataset

description: Isocybus

SMNS_Hym_Pla_001004

JA12

MF 3) D, BW, Tübingen, Steinenberg, N48°31.877' E009°01.802', 492 m, 25.iv. - 13.v.2014, leg. T. Kothe, M. Engelhardt & Ch. König (Flurstücknr. 2910 z. T.)

KIT synchrotron, 10x
DOI: 10.5281/zenodo.14647903
title: Isocybus, SMNS_Hym_Pla_001004 (JA12), synchrotron tomography dataset

description: Isocybus

SMNS_Hym_Pla_001004

JA12

MF 3) D, BW, Tübingen, Steinenberg, N48°31.877' E009°01.802', 492 m, 25.iv. - 13.v.2014, leg. T. Kothe, M. Engelhardt & Ch. König (Flurstücknr. 2910 z. T.)

KIT synchrotron, 10x
DOI: 10.15468/dl.pvnh5g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Cyclamen colchicum)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020250-250920141307145/datasets/export for details.
DOI: 10.15468/dl.prq96x
title: Occurrence Download

description: A dataset containing 18804 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alternanthera philoxeroides)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 18804 records from 244 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020251-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dj8jzs
title: Occurrence Download

description: A dataset containing 294 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boswellia sacra"
 ]
}

 The dataset includes 294 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020252-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.unaqtt
title: Occurrence Download

description: A dataset containing 4540 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arvicola scherman)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 4540 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020253-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.da6vch
title: Occurrence Download

description: A dataset containing 857 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Penthema formosanum",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 857 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020254-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4an43d
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plumeria rubra",
 "Country is Chad",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020255-250920141307145/datasets/export for details.
DOI: 10.57992/nmrxiv.p142
title: N-phenylpropanamide (NMRShiftDB Datasets)

description: NMRShiftDB_ID: 20209268

No DOI available
DOI: 10.57992/nmrxiv.p142.s1386
title: N-phenylpropanamide

description: This dataset contains NMR spectra obtained for the sample containing N-phenylpropanamide
DOI: 10.57992/nmrxiv.p142.s1386.d6099
title: N-phenylpropanamide[1]

description: 1
DOI: 10.57992/nmrxiv.p142.s1386.d6100
title: N-phenylpropanamide[2]

description: 2
DOI: 10.15468/dl.4fxtyr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plumeria rubra",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020256-250920141307145/datasets/export for details.
DOI: 10.57992/nmrxiv.p142.s1386.d6101
title: N-phenylpropanamide[4]

description: 4
DOI: 10.57992/nmrxiv.p142.s1386.d6102
title: N-phenylpropanamide[6]

description: 6
DOI: 10.5878/5kge-bh88
title: Analysis of the ecosystem services of mangrove to fisheries in the Mekong River Delta, Vietnam
title: Analysis of the ecosystem services of mangrove to fisheries in the Mekong River Delta, Vietnam

description: This dataset focuses on fisheries in mangrove areas of southern Vietnam. The study was designed to determine the optimal level of mangrove coverage for fisheries, while also examining the drivers of mangrove conversion to other land uses. The dataset provides valuable evidence for policymakers seeking to strengthen mangrove management and conservation strategies.

The research project that guided the data collection pursued the following objectives:

To examine the impacts of mangrove coverage on fisheries productivity and profitability.

To assess the effects of mangrove coverage on risks associated with fishery production.

To estimate the relationship between mangroves and fisheries.

To investigate the determinants of mangrove conversion.

Data were collected during field trips to fishing villages along the southern coast of Vietnam. The first wave of data was conducted between August 2014 and April 2015, and the second wave took place between September and December 2017. The final sample consists of 950 observations from 431 households whose livelihoods depend on fishing, located in 11 communes across six provinces: Bac Lieu, Ben Tre, Ca Mau, Kien Giang, Soc Trang, and Tra Vinh.

Mangrove forest area indicators at the commune level were measured using two complementary sources. The first source relied on official data reported by the Forestry Management Department, while the second was calculated from satellite imagery using Google Earth.
description: This dataset focuses on fisheries in mangrove areas of southern Vietnam. The study was designed to determine the optimal level of mangrove coverage for fisheries, while also examining the drivers of mangrove conversion to other land uses. The dataset provides valuable evidence for policymakers seeking to strengthen mangrove management and conservation strategies.

The research project that guided the data collection pursued the following objectives:

To examine the impacts of mangrove coverage on fisheries productivity and profitability.

To assess the effects of mangrove coverage on risks associated with fishery production.

To estimate the relationship between mangroves and fisheries.

To investigate the determinants of mangrove conversion.

Data were collected during field trips to fishing villages along the southern coast of Vietnam. The first wave of data was conducted between August 2014 and April 2015, and the second wave took place between September and December 2017. The final sample consists of 950 observations from 431 households whose livelihoods depend on fishing, located in 11 communes across six provinces: Bac Lieu, Ben Tre, Ca Mau, Kien Giang, Soc Trang, and Tra Vinh.

Mangrove forest area indicators at the commune level were measured using two complementary sources. The first source relied on official data reported by the Forestry Management Department, while the second was calculated from satellite imagery using Google Earth.
DOI: 10.5878/rt0j-g269
title: Analysis of the ecosystem services of mangrove to fisheries in the Mekong River Delta, Vietnam
title: Analysis of the ecosystem services of mangrove to fisheries in the Mekong River Delta, Vietnam

description: This dataset focuses on fisheries in mangrove areas of southern Vietnam. The study was designed to determine the optimal level of mangrove coverage for fisheries, while also examining the drivers of mangrove conversion to other land uses. The dataset provides valuable evidence for policymakers seeking to strengthen mangrove management and conservation strategies.

The research project that guided the data collection pursued the following objectives:

To examine the impacts of mangrove coverage on fisheries productivity and profitability.

To assess the effects of mangrove coverage on risks associated with fishery production.

To estimate the relationship between mangroves and fisheries.

To investigate the determinants of mangrove conversion.

Data were collected during field trips to fishing villages along the southern coast of Vietnam. The first wave of data was conducted between August 2014 and April 2015, and the second wave took place between September and December 2017. The final sample consists of 950 observations from 431 households whose livelihoods depend on fishing, located in 11 communes across six provinces: Bac Lieu, Ben Tre, Ca Mau, Kien Giang, Soc Trang, and Tra Vinh.

Mangrove forest area indicators at the commune level were measured using two complementary sources. The first source relied on official data reported by the Forestry Management Department, while the second was calculated from satellite imagery using Google Earth.
description: This dataset focuses on fisheries in mangrove areas of southern Vietnam. The study was designed to determine the optimal level of mangrove coverage for fisheries, while also examining the drivers of mangrove conversion to other land uses. The dataset provides valuable evidence for policymakers seeking to strengthen mangrove management and conservation strategies.

The research project that guided the data collection pursued the following objectives:

To examine the impacts of mangrove coverage on fisheries productivity and profitability.

To assess the effects of mangrove coverage on risks associated with fishery production.

To estimate the relationship between mangroves and fisheries.

To investigate the determinants of mangrove conversion.

Data were collected during field trips to fishing villages along the southern coast of Vietnam. The first wave of data was conducted between August 2014 and April 2015, and the second wave took place between September and December 2017. The final sample consists of 950 observations from 431 households whose livelihoods depend on fishing, located in 11 communes across six provinces: Bac Lieu, Ben Tre, Ca Mau, Kien Giang, Soc Trang, and Tra Vinh.

Mangrove forest area indicators at the commune level were measured using two complementary sources. The first source relied on official data reported by the Forestry Management Department, while the second was calculated from satellite imagery using Google Earth.
DOI: 10.15468/dl.urnjfs
title: Occurrence Download

description: A dataset containing 3288 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Cyclamen coum)"
 ]
}

 The dataset includes 3288 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020258-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rhufjh
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plumeria rubra",
 "Country is Congo, Democratic Republic of the",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020257-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9atske
title: Occurrence Download

description: A dataset containing 968 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amatitlania nigrofasciata)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 968 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020259-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ygjpeg
title: Occurrence Download

description: A dataset containing 1051 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Spain, Portugal)",
 "TaxonKey is Ursus arctos"
 ]
}

 The dataset includes 1051 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020261-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.