cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.hx3ffbgcg
title: A roadmap to durable BCTV resistance using long-read genome assembly of genetic stock KDH13

description: PacBio Sequence data associated with genetic stock KDH13.Datasets include
 genome resources and annotated files associated with the manuscript
 "Long-read genome assembly of Double Haploid Sugar Beet KDH13
 provides roadmap for durable genetic resistance to Beet Curly Top
 Virus". This includes genome assembly, ordered genome assembly,
 protein predictions, variant call format files for an F1 hybrid
 (KDH13xKDH19-17).
description: Detailed information such as code is stored within the github
 repo https://github.com/BetaGenomeNinja/PacBio_KDH13 Detailed methods are documented in the publication "Long-read genome assembly of Double Haploid Sugar Beet KDH13 provides roadmap for durable genetic resistance to Beet Curly Top Virus".
DOI: 10.5061/dryad.5tb2rbp2p
title: Data from: Habitat disturbance alters color contrast and the detectability of cryptic and aposematic frogs

description: Animals use color both to conceal and signal their presence, with patterns
 that match the background, disrupt shape recognition, or highlight
 features important for communication. The forms that these color patterns
 take are responses to the visual systems that observe them and the
 environments within which they are viewed. Increasingly, however, these
 environments are being affected by human activity. We studied how pattern
 characteristics and habitat change may affect the detectability of three
 frog color patterns from the Bocas del Toro archipelago in Panama:
 Beige-Striped Brown Allobates talamancae and two spotted morphs of Oophaga
 pumilio, Black-Spotted Green and Black-Spotted Red. To assess
 detectability, we used visual modeling of conspecifics and potential
 predators, along with a computer-based detection experiment with human
 participants. Although we found no evidence for disruptive camouflage, we
 did find clear evidence that A. talamancae stripes are inherently more
 cryptic than O. pumilio spots regardless of color. We found no evidence
 that color pattern polytypism in O. pumilio is related to differences in
 the forest floor between natural sites. We did, however, find strong
 evidence that human disturbance affects the visual environment and
 modifies absolute and rank order frog detectability. Human-induced
 environmental change reduces the effectiveness of camouflage in A.
 talamancae, reduces detectability of Black-Spotted Green O. pumilio, and
 increases chromatic contrast, but not detectability, in Black-Spotted Red
 O. pumilio. Insofar as predators may learn about prey defenses and make
 foraging decisions based on relative prey availability and suitability,
 such changes may have wider implications for predator-prey dynamics.
DOI: 10.5061/dryad.s4mw6m955
title: Impact of COVID-19 lockdown on glycemic control in adults with type 1 diabetes mellitus: information and standardized questions regarding follow-up during lockdown

description: Aim. To examine the impact of the lockdown caused by COVID-19 pandemic on
 both the glycemic control and the daily habits of a group of patients with
 type 1 diabetes mellitus (T1DM) using flash continuous glucose monitoring
 devices (Flash CGM).  Methods. Retrospective analysis based on
 all the information gathered in virtual consultations from a cohort of 50
 adult patients with T1DM with follow-up at our site. We compared their CGM
 metrics during lockdown with their own previous data before the pandemic
 occurred, as well as the potential psychological and therapeutic changes.
 Results. We observed a reduction of the average glucose: 160.26 ± 22.55
 mg/dl vs. 150 ± 20.96 mg/dl, p=0.0009, estimated HbA1c: 7.21 ± 0.78% vs.
 6.83 ± 0.71%, p=000.5, glucose management indicator (GMI) 7.15 ± 0.57 %
 vs. 6.88 ± 0.49 %, p=0.0003, and glycemic variability (CV): 40.74 ± 6.66
 vs. 36.43 ± 6.09 p&lt;0.0001. Time in range showed an improvement:
 57.46 ± 11.85% vs a 65.76 ± 12.09%, p&lt;0.0001, without an increase
 in percentage of time in hypoglycaemia. Conclusions: COVID-19 lockdown was
 associated with an improvement in glycemic control in patients with T1DM
 using CGM.
description: This
 retrospective study was conducted based on CGM metrics of patients with
 T1DM using a flash glucose monitoring system (FGM) FreeStyle Libre®
 Abbott, most of them in a multiple-dose of insulin injection therapy with
 a basal-bolus regime, carried out in the virtual consultations.
 Data
 download from the devices through the Libreview platform was made, all
 corresponding to a 14-day period of time before and during lockdown, and
 the forms of both ambulatory glucose profiles were compared. No
 intermediate visits were conducted. All the recommendations gathered in
 the International Consensus of CGM were followed [⁵], analysing the
 following variables: percentage of device usage, average daily readings,
 average glucose, estimated glycosylated hemoglobin (HbA1c), glucose
 management indicator (GMI), coefficient of variation (CV), time in range
 (TIR), percentage of time below range (&lt;70 mg/dl), number of low
 glucose events and total time (minutes) of registers below 70 mg/dl.
 Besides all this, virtual consultations were conducted following an
 established script with standardized questions to ensure that we collected
 the same data from all the subjects. These interviews collected
 information regarding follow-up during lockdown, emotional pattern,
 estimated variations of body weight, adjustments in the insulin doses,
 home daily physical activity, work situation, symptoms compatible with
 COVID-19 infection and specific diagnostic tests for the coronavirus. The
 standardized questions have been included in the supplementary table
 1.
DOI: 10.25493/mcv8-9t7
title: Parcellation scheme of rat iso- and proisocortical areas in Waxholm space (v3)

description: The present dataset provides a three-dimensional (3D) map of the rat iso- and proisocortex anchored in the standardized coordinate system of the Waxholm rat brain space. The parcellation encompasses 53 distinct areas and is the result of a multimodal analysis based on the heterogeneous regional and laminar distribution patterns of cell bodies and of muscarinic acetylcholine M2 receptors visualized in 2D sections. The receptor autoradiographs of a rat brain serially sectioned in the coronal plane were 3D reconstructed and anchored in Waxholm space. The ensuing transformation matrices were then applied to the delineations of the identified areas on the corresponding 2D autoradiographs, resulting in the registration of the location and extent of each area to the 3D reference Waxholm Space of the rat brain. This novel parcellation scheme of the rat iso- and proisocortical areas provides a high-resolution reference resource for the architectonically informed analysis of in vivo data and computational modelling approaches of the rat brain. As a dynamic framework, the Waxholm Rat Brain Atlas can be expanded by data of e.g., further neurotransmitter receptor types and brain regions.
DOI: 10.5061/dryad.ksn02v72m
title: Investigations on recycled aggregate material behavior and its effect on concrete strength

description: The fundamental behavior of the concrete materials has significant effects
 on its performance characteristics and, hence it can bring influences on
 the strength of the materials. This paper investigates the essential
 behavior of recycled aggregate materials recycled concrete aggregate
 materials that are manufactured from C&D wastes. It also evaluates
 its impact on the performance of concrete material, which is made from
 recycled aggregate as a substitute for conventional aggregate materials.
 Hence, the volume of C&D debris generated annually has been
 growing increasingly in most localities; there should be improvements in
 recycling and utilization of these materials.  The recycled
 aggregate materials manufactured from C&D debris were then used as
 a substitute for conventional aggregate materials at a rate range from 0%
 to 100%. Recycled aggregates from C&D wastes measuring 10 – 40 mm
 collected from recycling plants for mixing purposes. Different concrete
 grades are used to evaluate the suitability of the material for utilizing
 it in various civil engineering and construction projects. The paper
 examined the fundamental properties of concrete for the M30 design mix
 that ranges up to 100% substitution of recycled aggregate material and
 conventional aggregate material. The overall material properties have been
 tested. The concrete materials that are produced from recycled aggregate
 as a substitution were used for various tests that check the performance
 of the materials. As a result, it shows that a noteworthy enhancement of
 strength detected in the concrete sample cubes that contained recycled
 concrete aggregates rather than mixed C&D waste recycled
 aggregates (RA).
description: The data were collected through laboratory investigations on the
 samples prepared from recycled aggregate materials as a substitute for the
 natural aggregate materials and different replacement rates have been
 applied to check the suitability of the recycled aggregate materials from
 C&D waste materials to use in various civil engineering and
 construction perojects.
description: The report collecting tools mentioned here can be used to do
 similar investigations in related research areas.
DOI: 10.5061/dryad.0cfxpnw0c
title: Early-life effects on body size in each sex interact to determine reproductive success in the burying beetle Nicrophorus vespilloides

description: Early-life conditions have been shown to have a profound effect on an
 animal’s body size and fecundity across diverse taxa. However, less is
 known about how early-life effects on fecundity within each sex interact
 to determine reproductive success. We used experiments with burying
 beetles Nicrophorus vespilloides to analyse this problem. The nutritional
 conditions experienced by burying beetles in early life are a key
 determinant of adult body size in both sexes, and adult body size in turn
 influences male reproductive tactics. In previous work, we showed that
 smaller males are more effective than larger males at stimulating virgin
 female fecundity. In this study, we manipulated male and female body size
 by restricting access to food in early development. We then conducted
 breeding assays, in which small and large females were mated sequentially
 with small and large males, and then allowed to raise offspring without
 paternal care.  We tested whether large females, which are
 potentially more fecund, laid even more eggs when mated with small males.
 We found no evidence to support this prediction. Instead we detected only
 a weak non-significant trend in the predicted direction and no equivalent
 trend in the number of larvae produced. However, we did find that larvae
 attained a greater mass by the end of development when their mother was
 large and mated with a small male first. We suggest that large females
 might have evolved counter-measures that prevent exploitation by small
 fecundity-stimulating males, including partial filial cannibalism. By
 eating surplus larvae during reproduction, larger females would leave more
 of the carrion for their offspring to consume. This could explain why
 their surviving larvae are able to attain a greater mass by the time they
 complete their development.
DOI: 10.5061/dryad.hdr7sqvg5
title: Multiscale heart image data for: Multiscale cardiac imaging spanning the whole heart and its internal cellular architecture in a small animal model

description: Cardiac pumping depends on the morphological structure of the heart, but
 also on its sub-cellular (ultrastructural) architecture, which enables
 cardiac contraction. In cases of congenital heart defects, localized
 ultrastructural disruptions that increase the risk of heart failure are
 only starting to be discovered. This is in part due to a lack of
 technologies that can image the three dimensional (3D) heart structure,
 assessing malformations; and its ultrastructure, assessing disruptions. We
 present here a multiscale, correlative imaging procedure that achieves
 high-resolution images of the whole heart, using 3D micro-computed
 tomography (micro-CT); and its ultrastructure, using 3D scanning electron
 microscopy (SEM). We achieved uniform fixation and staining of the whole
 heart, without losing ultrastructural preservation on the same sample,
 enabling correlative multiscale imaging. Our approach enables multiscale
 studies in models of congenital heart disease and beyond.
description: Data deposited is from a multiscale imaging procedure, described
 in the eLife paper. It consists of cardiac imaging data from two chicken
 embryonic hearts: 1) a normal, control (CON) heart; and 2) a heart with a
 malformation resembling tetralogy of Fallot (TOF) in humans. The heart is
 already fully formed, so these images are equivalent to a human fetal
 heart of 5-6 months of gestation. The whole heart was imaged using 3D
 micro-computing tomography (microCT).  Then regions of interest (ROIs)
 were chosen for imaging the sub-cellular architecture (ultrastructure)
 using 3D serial block-face scanning electron microscop7 (SBF-SEM images).
 From selected SBF-SEM images, we segmented the cell nuclei, mitochondria
 and myofibrils, as well as the extracellular space using the Dragonfly
 software (ORS, Canada). Datasets include microCT images, SBF-SEM images,
 segmented SBF-SEM images. Protocols employed are fully disclosed and
 detailed in the manuscript methods section.
DOI: 10.5061/dryad.nk98sf7rm
title: Wintering shorebird abundance on Tomales Bay, Marin County, California, USA, 1989-2018

description: Contains data on abundance of shorebirds on Tomales Bay, Marin County, CA,
 USA from Nov 1989 through Feb 2019. Data were collected as part of an
 ongoing, long-term monitoring project. Surveys covered all appropriate
 shorebird habitat on Tomales Bay, and counted all individual shorebirds in
 those areas.
description: Study area and monitoring Wintering
 shorebirds were monitored at Tomales Bay, Marin Co., California from Nov
 1989 to Feb 2019. Surveys covered all shorebird habitat along Tomales Bay
 and counts were standardized on tide level and conducted on rising tides
 between 0.76 and 1.22 m above mean lower low water. Distinct survey sites
 were established that could be simultaneously surveyed in approximately 90
 minutes by teams of 1-3 observers using binoculars and scopes (mean
 observers per site = 1.6; mean observers/survey = 20.2, range = 10-42
 observers/survey). Rarely, count teams had more than one count area; this
 happened only with smaller, adjacent areas. All
 shorebirds and raptors seen were counted, and counters attempted to
 identify all individual birds to species. Observations were occasionally
 pooled into species groups including the golden plovers (Pacific
 Golden-Plover <i>Pluvialis fulva</i> and American
 Golden-Plover <i>P. dominica</i>), dowitchers (Short-billed
 Dowitcher <i>Limnodromus griseus</i> and Long-billed Dowitcher
 <i>L.</i> <i>scolopaceous</i>) and yellowlegs
 (Greater Yellowleg <i>Tringa melanoleuca</i> and Lesser
 Yellowleg <i>T. flavipes</i>) because of the difficulty in
 separating these species in the field. Intermittently
 (e.g. when visibility was poor or distances were far), small shorebirds
 (Dunlin, Least Sandpiper <i>Calidris minutilla</i>,
 Sanderling, and Western Sandpiper) were pooled by counters.
description: Contact nils.warnock@egret.org or cgrc@egret.org for additional
 information.
DOI: 10.5061/dryad.280gb5mnt
title: Data of cell size, cell carbon content, and biomass of dinoflagellates and diatoms in the oceanic ecosystem of the Southern Gulf of Mexico

description: Greatest linear dimension (GLD, µm) measurements as a proxy of the cell
 size, cell carbon estimates (pgC cell-1), and carbon biomass assessments
 of dinoflagellates and diatoms cells are reported in this dataset. The
 phytoplankton samples were collected from the oceanic regions, Perdido and
 Coatzacoalcos, located in the Southern Gulf of Mexico. The information
 comes from four campaigns carried out during 2016 (MF1 cruise, late
 winter, and MF2 cruise, late summer), 2018 (MF3 cruise, spring), and 2019
 (MF4 cruise, spring). The carbon data (pg C cell-1) were based on
 biovolume calculations derived from linear dimension measurements of
 individual cells and the approximate geometric body shape of each genus.
 The biomass assessments (µg C L-1) were performed using these carbon
 content factors and cell abundances. 
description: The data
 is a contribution of the Gulf of Mexico Research Consortium (CIGoM; http://www.cigom.info/). This data is openly shared for scientific research purposes, and authors request to be contacted prior to usage.
DOI: 10.5061/dryad.v9s4mw6t8
title: Sugar crop yield vs cane toads

description: In 1935, cane toads (Rhinella marina) were brought to Australia to control
 insect pests. The devastating ecological impacts of that introduction have
 attracted extensive research, but the toads’ impact on their original
 targets has never been evaluated. Our analyses confirm that sugar
 production did not increase significantly after the anurans were released,
 possibly because toads reduced rates of predation on beetle pests by
 consuming some of the native predators of those beetles (ants), fatally
 poisoning others (varanid lizards) and increasing abundances of
 crop-eating rodents (that can consume toads without ill-effect). In short,
 any direct benefit of toads on agricultural production (via consumption of
 insect pests) likely was outweighed by negative effects that were mediated
 via the toads’ impacts on other taxa. Like the toad’s impacts on native
 wildlife, indirect ecological effects of the invader may have outweighed
 direct effects of toads on crop production.
description: Historical data.
DOI: 10.5061/dryad.2fqz612n0
title: A blinded, controlled trial of objective measurement in Parkinson’s disease

description: Medical conditions with effective therapies are usually managed with
 objective measurement and therapeutic targets. Parkinson's disease
 has effective therapies, but continuous objective measurement has only
 recently become available. This blinded, controlled study examined whether
 management of Parkinson's disease was improved when clinical
 assessment and therapeutic decisions were aided by objective measurement.
 The primary endpoint was improvement in the Movement Disorder
 Society-United Parkinson's Disease Rating Scale's (MDS-UPDRS)
 Total Score. In one arm, objective measurement assisted doctors to alter
 therapy over successive visits until objective measurement scores were in
 target. Patients in the other arm were conventionally assessed and
 therapies were changed until judged optimal. There were 75 subjects in the
 objective measurement arm and 79 in the arm with conventional assessment
 and treatment. There were statistically significant improvements in the
 moderate clinically meaningful range in the MDS-UPDRS Total, III, IV
 scales in the arm using objective measurement, but not in the
 conventionally treated arm. These findings show that global motor and
 non-motor disability is improved when the management of Parkinson's
 disease is assisted by objective measurement.
description: Data was collected in a controlled study. Data includes a)
 clinical scales filled in by study particpants and by study co-ordinators;
 b) reports by doctors particapting in study; c) data from sensors and
 written interpreations of the sensor data.
description: This information is available in spreadsheets.
DOI: 10.5061/dryad.z612jm69g
title: Supplementary material from: Chinese adults are more susceptible to effects of overall obesity and fat distribution on cardiometabolic risk factors

description: Context: The body mass index (BMI) and waist circumference (WC) as
 diagnostic tools of obesity do not reflect the same level of fat mass and
 whether obesity leads to various effects on cardiometabolic risk factors
 among different racial/ethnic population is unknown. Objective: The study
 aims to address the multicollinearity between BMI and WC by using the
 residual model approach, and to assess and compare the effects of obesity
 metrics on cardiometabolic risk factors among different races/ethnicities.
 Design, setting and participants: Data from a nationally representative
 sample of Mainland Chinese adults collected in 2010, and data from the
 National Health and Nutrition Evaluation Survey (NHANES) 2005-2016 were
 used. By conducting a regression analysis between WC and BMI, the
 variation of BMI was removed from WC measures and residual of WC was
 obtained. The associations between obesity metrics and cardiometabolic
 risk factors were compared among different races/ethnicities by sex.
 Results: The residual WC was significantly associated with all the
 cardiometabolic risk factors in Mainland Chinese, and most of the factors
 in Non-Hispanic White and Non-Hispanic Black adults, but not in the other
 races/ethnicities. The standardized regression coefficients of the
 associations between obesity metrics and cardiometabolic factors showed
 that the obesity metrics had greater impact on systolic blood pressure,
 diastolic blood pressure and triglyceride in Chinese adults than those of
 other racial/ethnic groups. Conclusions: Chinese adults are more
 susceptible to the effects of overall obesity and fat distribution on
 cardiometabolic risk factors than the other racial/ethnic population.
DOI: 10.15468/dl.tkkbmr
title: Occurrence Download

description: A dataset containing 3928887 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Repatriated is TRUE",
 "Country is Norway",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is null",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
 },
 {
 "not" : {
 "DatasetKey" : [
 "is EBCC Atlas of European Breeding Birds"
 ]
 }
 },
 {
 "not" : {
 "DatasetKey" : [
 "is (Table 3) Relative abundance of Azolla spp., peridinoid dinocysts, gonyaulacoid dinocysts, non-saccate pollen, bisaccate pollen and spores from the Lomonosov Ridge during different Arctic coring expeditions"
 ]
 }
 }
 ]
}

 The dataset includes 3928887 records from 1839 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002539-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c2gu8u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Tragulus napu (F.Cuvier, 1822))",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016156-250525065834625/datasets/export for details.