cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25706331.v3
title: Supplementary Material for: Interest of a hospital-based geriatric living lab among inpatients with neurocognitive disorders: the ALLEGRIA cross-sectional study

description: Introduction: The objectives of this study were to determine the participation rates, levels of engagement and abilities to answer User eXperience (UX) questionnaires according to the presence and severity of major neurocognitive disorders (MNCD) among participants involved in gerontechnological experimentations within a hospital-based geriatric clinical living lab.
Methods: Cross-sectional analysis examining all consecutive geriatric patients involved in the Allegro living lab experimentations, separated according to the presence and severity of MNCD. Participation rates were assessed using the “Task-Based Experiment”-type User eXperience (TBE-UX). Participation was considered successful if patients fully completed the TBE-UX experimental procedure. Engagement level was characterized using a five-point scale: Interactive, Constructive, Active, Passive and Disengaged. The abilities to answer UX questionnaires were characterized using a five-point scale from “no completion” to “completion in autonomy”.
Results: 313 patients were included. All patients without MNCD and with mild MNCD fully completed the TBE-UX procedures. Their engagement behaviors were rather active and constructive. All patients without MNCD and 88% of those with mild MNCD were able to fully complete the UX questionnaires. 96.2% of the patients with moderate MNCD fully followed the TBE-UX procedures. Their engagement behaviors were mainly active or passive. 64.2% were able to fully complete the UX questionnaires. 76.5% of the patients with severe MNCD fully followed the TBE-UX procedures. Their engagement behaviors were mainly passive or disengaged. 35.3% were able to fully complete the UX questionnaires.
Discussion/Conclusion: Living lab experimentations appear feasible with older adults, even with those with MNCD. Task support can be offered to those with severe MNCD.
DOI: 10.6084/m9.figshare.27082798.v1
title: Artificial Intelligence or Machine learning for Prediction of stone-free status in Patients with urolithiasis.rm5

description: <b>Background:</b> Urolithiasis is one of the most common urological diseases worldwide. One of the most common therapy, extracorporeal shock wave lithotripsy (ESWL), has a high failure rate. The failure rate can be significantly reduced by identifying the candidates most likely to benefit from ESWL, for example, by using machine learning (ML) algorithms. Decision tree analysis (DTA), artificial neural networks (ANN), and random forests (RF) represent a few of the machine learning approaches employed to forecast the stone-free outcome following ESWL.<b>Methods:</b> 219 studies were searched through six electronic databases (CENTRAL, MEDLINE, EMBASE, EBSCO, Proquest, SCOPUS). We employed the Preferred Reporting Items for Systematic Reviews and Meta-Analysis (PRISMA) guidelines and adhered to the Standards for Reporting Diagnostic Accuracy Studies (STARD). To evaluate the potential bias in all the studies, we utilized the Quality Assessment of Diagnostic Accuracy Studies (QUADAS-2) tool.<b>Results:</b> 41,484 patients from 11 studies were included. The ML models highlight varying levels of diagnostic precision, with sensitivity spanning from 35-96%, and specificity ranging from 63-98.4%, and area under the curve falling between 0.49-0.96. It is shown in this study that the accuracy of RF and DTA in predicting stone-free status is superior than ANN.<b>Conclusion:</b> ML is a comparable predictive method to statistical analysis in predicting stone-free status. Random forest method and DTA are superior MLs compared to ANN. Stone size, density, and 3D texture analysis are the most important variables to be considered in the ML models and should be included in the models to ensure accuracy of stone-free status prediction.
DOI: 10.6084/m9.figshare.25672224.v1
title: Supplementary Material for: Eruptive melanocytic nevi in the setting of encorafenib, cetuximab, and binimetinib combination therapy

description: Introduction
The development of new and changing melanocytic lesions have been increasingly reported as an adverse dermatologic toxicity of BRAF inhibitor therapy. Melanocytic lesions and melanomas induced by BRAF inhibitor therapy that lack BRAF V600E expression have been less commonly described. One mechanism that has been proposed for the development of BRAF inhibitor-induced melanocytic lesions, including those lacking BRAF V600E expression, is the paradoxical activation of the MAPK signaling pathway in BRAF wild-type (BRAFWT) cells. 
Case Presentation
Herein, we report a rare case of a 39-year-old woman who developed numerous BRAF V600E-negative eruptive melanocytic nevi (EMN) following encorafenib, cetuximab, and binimetinib combination therapy, the current standard of care for the treatment of BRAF-mutant metastatic colorectal cancer (mCRC). 
Conclusion
Patients treated with BRAF inhibitors, with or without related combination therapies, who develop BRAFWT melanocytic lesions are at risk for developing both dysplastic nevi and melanoma, thereby warranting baseline dermatoscopic evaluation prior to the initiation of therapy as well as regular follow-up during and after treatment.
DOI: 10.6084/m9.figshare.7890956.v1
title: gVCF_NA18877

description: 1000 Genomes gVCF mapped to hs37d5 for NA18877. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.23805027.v2
title: Map activity recognition dataset

description: Unzip <b>Map_Data</b> at the same level as the <b><i>M</i></b><b><i>ap.ipynb</i></b> file.Data description: include only the feature set after eye movement and EEG preprocessing(1) All feature sets (entire trial/time window) are named: <i>ET+EEG_features_xxx.xlsx.</i>(2) The results of the comparison of different classifiers and feature selection methods are named: <i>diff_clf(fs)_result.xlsx</i>.(3) 5 feature sets (for 1000ms time window with 500ms overlay) are named: <i>all_features_(window_start_time)-</i><i>(window_end_time)</i><i>ms.xlsx.</i><b>Please note that we have not disclosed all raw ET and EEG data given the volume of raw data and concerns about the privacy of participants. Please contact the authors at their email address for further enquiries.</b>
DOI: 10.6084/m9.figshare.6954572.v1
title: Crystallite size from Wet chemical synthesis of nanocrystalline hydroxyapatite flakes: effect of pH and sintering temperature on structural and morphological properties

description: Crystallite size plot data in origin graph format
DOI: 10.6084/m9.figshare.28001168.v1
title: Datas - effects of light colour and intensity on stress responses in the Pacific white shrimp.xlsx

description: This study aimed to find the light colour and intensity that induces fewer stress responses and promotes feeding behaviour of <i>Penaeus vannamei</i> shrimp
DOI: 10.6084/m9.figshare.11324117.v1
title: TPCs triatoma infestans

description: Locomotory response of Triatoma infestans invidividuals acclimated to six thermal treatments under 8 exposing temperatures.
DOI: 10.6084/m9.figshare.28856267.v1
title: Supporting Information for<b> </b>Redox Dynamics of Late Triassic granitoids in the NE Tibetan Plateau: Magmatic Source Constraints and Implications for Lithium Mineralization

description: This supporting information includes supplementary materials relevant to the content discussed in the main article, such as additional figures and data tables. These materials provide further details that aid in a deeper understanding of the results and discussion presented in this study.
DOI: 10.6084/m9.figshare.3145672.v1
title: Changes in hanbaiten employment 2001-2015

description: the origin of this date is the Japan Newspaper Publishers and Editors Association website. <br> Source - http://www.pressnet.or.jp/data/employment/employment04.php <br>It describes the decline in the number of both part-time and full-time employees at newspaper distribution businesses in Japan between 2001 and 2015<br>
DOI: 10.6084/m9.figshare.1282280.v2
title: qPCR Analysis

description: Statistical Analysis of qPCR and graphing
DOI: 10.6084/m9.figshare.13475400.v1
title: Supplementary Material for: The Involvement of Chronic Kidney Disease and Acute Kidney Injury in Disease Severity and Mortality in Patients with COVID-19: A Meta-Analysis

description: <b><i>Background:</i></b> A meta-analysis was performed to evaluate the association of chronic kidney disease (CKD) and acute kidney injury (AKI) with the clinical prognosis of patients with coronavirus disease 2019 (COVID-19). <b><i>Methods:</i></b> The PubMed, EMBASE, Cochrane Library, medRxiv, Social Science Research Network, and Research Square databases (from December 1, 2019 to May 15, 2020) were searched to identify studies that reported the associations of CKD/AKI and disease severity/mortality. Pooled odds ratios (ORs) and 95% confidence intervals (CIs) were calculated and meta-regression was performed. <b><i>Results:</i></b> In total, 42 studies enrolling 8,932 participants were included in this meta-analysis. The quality of most included studies was moderate to high. Compared with patients without previously diagnosed CKD, those with CKD had a significantly increased risk of progressing to a severe condition (OR 2.31, 95% CI 1.64–3.24) or death (OR 5.11, 95% CI 3.36–7.77). Similarly, compared with patients without AKI, those with AKI had a significantly increased risk of progressing to a severe condition (OR 11.88, 95% CI 9.29–15.19) or death (OR 30.46, 95% CI 18.33–50.59). Compared with patients with previously diagnosed CKD, those with AKI were more likely to progress to a severe condition (<i>p</i><sub>group</sub> &lt; 0.001, <i>I</i><sup>2</sup> = 98.3%) and even to death (<i>p</i><sub>group</sub> &lt; 0.001, <i>I</i><sup>2</sup> = 96.5%). Age had a significant impact on the association between CKD and disease severity (<i>p</i> = 0.001) but had no impact on the associations between AKI and disease severity (<i>p</i> = 0.80), between CKD and mortality (<i>p</i> = 0.51), or between AKI and mortality (<i>p</i> = 0.86). Four important complications (cardiac injury, shock, acute respiratory distress syndrome, and liver injury) did not significantly affect the associations between CKD/AKI and disease severity/mortality, indicating that CKD/AKI may be independent clinical prognostic indicators for patients with COVID-19. <b><i>Conclusions:</i></b> In COVID-19 patients, CKD/AKI was associated with worse outcomes compared with those without CKD/AKI. AKI was associated with higher risks of severity and mortality than CKD.
DOI: 10.6084/m9.figshare.21129775.v1
title: Supplementary Material for: Clinical Features of Patients with Alzheimer’s Disease and a History of Traumatic Brain Injury

description: <b><i>Introduction:</i></b> Traumatic brain injury (TBI) has been associated with a greater risk of developing Alzheimer’s disease (AD). Less is known about the clinical features of AD patients with TBI history. The objective of this study was to examine whether a history of TBI and specific injury characteristics are associated with differences in age of disease onset, cognitive features, and neuropsychiatric symptoms (NPSs) in AD patients. <b><i>Methods:</i></b> Biomarker-proven AD patients (CSF or amyloid PET) were selected from the Amsterdam Dementia Cohort. TBI events were classified by age at injury (TBI &lt;25 or ≥25 years) and TBI severity (loss of consciousness, multiple events). Cognitive composite scores were calculated from results of a neuropsychological test battery. NPSs were assessed with the Neuropsychiatric Inventory Questionnaire (NPI-Q). Linear regression analyses were utilized to examine associations between TBI, TBI characteristics, and clinical outcome measures. <b><i>Results:</i></b> Among the 1,755 selected AD patients (mean age = 65.2 years), 166 (9.5%) had documented ≥1 TBI in their medical history. Overall, TBI history was not related to differences in age of disease onset, but age at injury &lt;25 years old was associated with 2.3 years earlier age at symptom onset (<i>B</i> = −2.34, <i>p</i> = 0.031). No significant associations were found between TBI history or TBI characteristics and differences in cognition or NPSs. <b><i>Conclusion:</i></b> Our results underscore previous findings on the vulnerability of the brain during critical maturation phases and suggest that an early TBI may contribute to lower resilience to neurodegenerative changes.
DOI: 10.6084/m9.figshare.23316488.v3
title: Volcán Galeras

description: Database lung function
DOI: 10.6084/m9.figshare.1394988.v3
title: Hindcast data for 2002

description: Wave model results from 2002 hindcast by: Christian M. Appendini, Alec Torres-Freyermuth, Paulo Salles, Jose López-González, and E. Tonatiuh Mendoza, 2014: Wave Climate and Trends for the Gulf of Mexico: A 30-Yr Wave Hindcast. J. Climate, 27, 1619–1632.
DOI: 10.6084/m9.figshare.27786267.v1
title: Supplementary Material for: Active Components in Internet-Based Cognitive Behavioral Therapy for Social Anxiety Disorder: A Randomized Full Factorial Trial

description: Introduction: Many studies have demonstrated that social anxiety disorder (SAD) can be effectively treated with psychotherapy, particularly cognitive behavioral therapy (CBT), including internet-based CBT (ICBT). Despite evidence-based treatments, many individuals do not sufficiently benefit from them. Identifying the active components could help to improve the effectiveness of SAD treatment. This study tested the effects of four treatment components (psychoeducation, cognitive restructuring, attention training, and exposure) within ICBT for SAD to investigate its active components. Methods: This randomized full factorial trial consisted of four factors (i.e., treatment components) and 16 conditions. A total of 464 adults with a diagnosed SAD were recruited from the community. The primary outcome was SAD symptoms at 8 weeks (post-assessment). Secondary outcomes included SAD diagnosis, SAD symptoms at follow-up (4 months after post), depression and anxiety symptoms, quality of life, client satisfaction, and adverse effects. Results: Conditions including psychoeducation and exposure were significantly more effective in reducing SAD symptoms at post compared to conditions without these components. Conditions including cognitive restructuring and attention training did not show superiority over conditions without them at post. However, all treatment conditions significantly reduced symptoms compared to the condition without a treatment component. At follow-up, the superiority of psychoeducation and exposure was not significant anymore due to the version without the respective components catching up. Conclusion: The findings suggest that while all treatment components of ICBT for SAD are beneficial compared to no treatment, psychoeducation and exposure include specific active components that significantly improve treatment outcomes more quickly in ICBT for SAD.
DOI: 10.6084/m9.figshare.28589567.v1
title: Grattan Beach Rock-Attached Seaweed Data 02/10/2024 - 31/10/2024 (finalizedshorestack.csv)

description: This data set was recorded in October 2024, where 8 different visits to Grattan Beach, Galway, Ireland, took place to recorded several rock-attached macroalgae factors.Factors included species, latitude and longitude, maximum frond length, seaweed biomass, rock mass, total mass, depth of rock in sand, and ratios between the recorded masses. A 'storm' value was also recorded, where samples were recorded either before or after Storm Ashley occurred (18th - 21st October 2024).
DOI: 10.6084/m9.figshare.25656405.v2
title: intervalidation META ANALYSIS.xlsx

description: Baseline characteristics among patients in included studies were inter-validated by authors in meta analysis paper utilized here.
DOI: 10.6084/m9.figshare.25866631.v1
title: Supplementary Material for: Emotional changes during Imagery Rescripting of aversive social memories in Social Anxiety Disorder: a randomized controlled trial

description: Introduction: Imagery Rescripting (ImRs) is a psychotherapeutic intervention targeting aversive memories. During the three-phase intervention, patients re-experience their aversive memory (phase 1), observe the scene from their adult perspective and intervene to help their former selves (phase 2), and re-experience it again with the positive changes (phase 3). Previous studies have rarely investigated emotional and regulatory processes taking place during the intervention.
Objective: This randomized-controlled trial investigated self-reported affective and physiological responses during ImRs.
Methods: Seventy-seven patients with Social Anxiety Disorder (SAD) were randomly assigned to a single session ImRs or a control intervention (recall and discussion of the memory) targeting an aversive social memory. Heart rate (HR) and heart rate variability (HRV) were assessed during and post-hoc ratings of positive and negative feelings after baseline and the intervention phases. 
Results: Relative to the control intervention, ImRs resulted in an initial increase in negative feelings from baseline to phase 1 and a following larger (phase 1 to phase 2) and more stable (phase 2 to phase 3) decrease in negative feelings/increase in positive feelings. On the physiological level, during ImRs compared to the control intervention, mean HR was significantly higher during phase 1 and HRV during phase 3, each compared to baseline.
Conclusions: These results provide further information about the specific sequence of emotional responses on different response levels during ImRs, being consistent with known theories of emotional processing and supposed mechanisms of ImRs.
DOI: 10.6084/m9.figshare.22584742.v4
title: An extensive spatiotemporal water quality dataset covering four decades (1980-2022) in China

description: This dataset included water quality data for daily, weekly, and monthly in the time period of 1980-2022, with 17 indicators for over 330,000 observations at 2384 sites from inland to coastal/oceanic areas in China.
DOI: 10.6084/m9.figshare.24891807.v1
title: Data of bike-sharing trip

description: Data of bike-sharing trip
DOI: 10.15468/dl.uccnrc
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Lepeophtheirus nordmannii (Milne Edwards, 1836)"
 ]
}

 The dataset includes 25 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009455-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.1136081_d109
title: Ex3R43C3 DAPI-8 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.5241487.v1
title: Erratum: The Effects of Palmitic Acid on Nitric Oxide Production by Rat Skeletal Muscle: Mechanism via Superoxide and iNOS Activation

description: <b><i>Background: </i></b>Increased plasma concentrations of free fatty acids (FFA) can lead to insulin resistance in skeletal muscle, impaired effects on mitochondrial function, including uncoupling of oxidative phosphorylation and decrease of endogenous antioxidant defenses. Nitric oxide (NO) is a highly diffusible gas that presents a half-life of 5-10 seconds and is involved in several physiological and pathological conditions. The effects of palmitic acid on nitric oxide (NO) production by rat skeletal muscle cells and the possible mechanism involved were investigated. <b><i>Methods: </i></b>Primary cultured rat skeletal muscle cells were treated with palmitic acid and NO production was assessed by nitrite measurement (Griess method) and 4,5-diaminofluorescein diacetate (DAF-2-DA) assay. Nuclear factor-kappa B (NF-ĸB) activation was evaluated by electrophoretic mobility shift assay and iNOS protein content by western blotting. <b><i>Results: </i></b>Palmitic acid treatment increased nitric oxide production. This effect was abolished by treatment with NOS inhibitors, L-nitro-arginine (LNA) and L-nitro-arginine methyl esther (L-NAME). NF-ĸB activation and iNOS content were increased due to palmitic acid treatment. The participation of superoxide on nitric oxide production was investigated by incubating the cells with DAF-2-DA in the presence or absence of palmitic acid, a superoxide generator system (X-XO), a mixture of NOS inhibitors and SOD-PEG (superoxide dismutase linked to polyethylene glycol). Palmitic acid and X-XO system increased NO production and this effect was abolished when cells were treated with NOS inhibitors and also with SOD-PEG. <b><i>Conclusions: </i></b>In summary, palmitic acid stimulates NO production in cultured skeletal muscle cells through production of superoxide, nuclear factor-kappa B activation and increase of iNOS protein content.
DOI: 10.6084/m9.figshare.26588481.v1
title: Additional file 27 of The eQTL colocalization and transcriptome-wide association study identify potentially causal genes responsible for economic traits in Simmental beef cattle

description: Additional file 27: Table S7. The results of GWAS-eQTL colocalization by Coloc or SMR in three tissues.
DOI: 10.6084/m9.figshare.28512800.v1
title: Global Yearly Forest Aboveground Biomass (AGB) in 2000-2020

description: This dataset describes Global Aboveground Biomass(AGB) by GEDI and MODIS GLASS Dataset in 2001-2020.The Spatial resolution of thisdataset is 0.00833333 degree in GCS_WGS_1984.The AGB data based on GEDI SAWA indices in 2020 was used as a benchmark data,indices dervied from MODIS Global lAnd Surface Satellite (GLASS) datasets in 2020 were used to retrieval the AGB.Different retrieval models were developed by Random Forest considering different forest types from MODIS MCD12Q1 Dataset within different continents. The final map in 2000-2020 were extracted by the information from MODIS GLASS datasaet with the models. The overall accuracy of the datasets are close to 75%.
DOI: 10.4121/uuid:4ae59365-92f0-480b-a899-ade34bc84a00
title: Database of femur samples

description: The dataset includes a database of human proximal femora: The database was built in the course of VPHOP or the Osteoporotic Virtual Physiological Human project (http://www.vphop.eu/). This data collection is accessible and open to use in the research projects upon proper referencing to the published papers and the database itself. A total of 33 human cadaver femora were collected. The mean age of the donors was 77.8±10.0 years (range 61-95 years), 17 donors were female and 16 donors were male. Each entry in the database contains the finite element model input file in ANSYS format (*.cdb files), a tabular file containing microstructural parameters measured at the location of each element (*.dat) and the reconstructed microCT images of the sample (*.aim). Additional files for each sample such as microCT images and the different masks can be provided upon request.
DOI: 10.6084/m9.figshare.26651331.v1
title: Additional file 1 of Diagnostic value of American College of Radiology Thyroid Imaging Reporting and Data System combined with elastography in differentiating clinically atypical subacute thyroiditis from papillary thyroid carcinoma: a single retrospective research

description: Additional file 1. Table S1: Diagnostic value of the ultrasound characteristics for distinguishing PTC from CAST