cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26935432.v3
title: FOXP1 Molecular Dynamics Dataset

description: This dataset comprises pre-computed molecular dynamics simulation for the FOXP1 protein, intended for use with the SOMMD (Self-Organizing Maps for Molecular Dynamics) R package. The files, including .xtc and .gro formats, serve as input data for analysis within a notebook designed to demonstrate the capabilities of the SOMMD R package.
DOI: 10.17632/mg9cpfcb6v
title: Data for: Wavelet Group Method of Data Handling for Fault Prediction in Electrical Power Insulators

description: Original signal from ultrasound equipment.
DOI: 10.6084/m9.figshare.15241452.v2
title: Parameters of a 24-bus distribution network

description: Parameters of a 24-bus distribution network，only considering 6 simulated operation periods under typical day, including system parameters such as lines and transformers
DOI: 10.6084/m9.figshare.25021337.v3
title: Data from: Can overlooking ‘invisible landscapes’ bias habitat selection estimation and population distribution projections?

description: The README file explainshow to navigate between scriptsBecause of the size of simulated datasets (273G0), here, we provide all scripts required to generate data but provide only a small subsample of the simulated data.
DOI: 10.6084/m9.figshare.28738388.v1
title: titration data.xlsx

description: SYPRO<sup>®</sup> Orange (SyO) is a zwitterionic dye that is used for protein gel staining, for thermal melt assays of proteins, and as a marker for misfolded proteins. However, while widely utilized, much of SyOs’ photophysics remains unexplored. We studied the effect of pH on the photophysical properties of SyO in aqueous solution and found two well-defined transitions in the 0 to 10 pH range between three SyO species with distinct absorption and fluorescence properties. The first transition occurs around pH 1.5 and appears to be a coupled deprotonation–aggregation event. The second transition occurs between pH 4 and 5, and its pK<sub>a</sub> depends on the concentration of SyO. A link between the concentration dependence of the pK<sub>a</sub> of the second pH transition and the aggregation behavior of SyO at neutral pH is discussed, and aggregation equilibrium titrations are presented that suggest that SyO forms multimeric aggregates at neutral pH containing ten or more SyO molecules.
DOI: 10.6084/m9.figshare.21805170.v1
title: Supplementary Material for: Interleukin-11 Is Elevated in Patients with Atrial Fibrillation, Correlates with Serum Fibrosis Markers, and Represents a Therapeutic Target for Atrial Fibrosis

description: <b><i>Introduction:</i></b> Inflammatory cytokines are closely associated with developing cardiac fibrosis. This research aimed to explore the significant role of IL-11 in atrial fibrosis progression and potential therapeutic targets. <b><i>Methods:</i></b> 207 AF patients and 160 healthy subjects were included in the case-control study. Blood samples were analyzed for the level of IL-11 by enzyme-linked immunosorbent assay (ELISA). Angiotensin II (Ang II)-treated fibrosis mouse models were generated, and expression of IL-11 mRNA and protein was detected by RT-qPCR and Western blot. IL-11 antagonist was used to evaluating atrial fibrosis-related markers. <b><i>Results:</i></b> The persistent atrial fibrillation patients (<i>n</i> = 76) had significantly larger left atrial size, higher serum levels of hypertrophic protein BNP, proinflammatory cytokine high-sensitivity C-reactive protein (hs-CRP), and interleukin-6 (IL-6) compared to paroxysmal atrial fibrillation patients (<i>n</i> = 131), and healthy subjects (all <i>p</i> &lt; 0.05). Pearson correlation analysis revealed significant positive correlation between serum IL-11 and cardiac fibrosis markers BNP (<i>r</i> = 0.394, <i>p</i> &lt; 0.001), CTX-I (<i>r</i> = 0.418, <i>p</i> &lt; 0.001), PICP (<i>r</i> = 0.306, <i>p</i> &lt; 0.001), PIIINP (<i>r</i> = 0.335, <i>p</i> &lt; 0.001), and TGF-β1 (<i>r</i> = 0.273, <i>p</i> &lt; 0.001). In the fibrosis mouse model, Ang II infusion significantly upregulated IL-11 mRNA and protein expression in the left atrium of mice (<i>p</i> &lt; 0.05), as well as staining intensity of Masson trichrome, the intensity of α-SMA, and it increased mRNA expression of collagen I and III in atrial tissue. IL-11 antagonist treatment significantly attenuated Masson trichrome, number of α-SMA-positive myofibroblasts in atrial tissue. Also, it significantly reduced the p-ERK1/2 in atrial tissue of mice infused with Ang II (<i>p</i> &lt; 0.05). <b><i>Conclusions:</i></b> IL-11 is upregulated in the serum of AF patients, and IL-11 inhibitor significantly inhibited Ang II-induced atrial fibrosis, a key pathological feature of AF. Therefore, IL-11 could be a potential therapeutic target for AF.
DOI: 10.6084/m9.figshare.13570655.v1
title: Early Islamic Qibla Database

description: This is an Excel spreadsheet with 160 mosques and prayer <br>places listed in chronological order along with GPS coordinates and other information. These places date starting from the very first mosques built in Medina onwards. I have tried to produce an exhaustive list for the first two centuries of Islam, then major mosques for the third century, followed by a few important later mosques. I have been updating this list on a regular basis for the last twenty years, but now that it is published here, I will post a new list only after any major additions. <br>An active up-to-date list is published on my website: https://nabataea.net/ Follow the menu Founding of Islam <br>/Qibla Tool. This tool provides a graphical overview of this <br>spread-sheet. I have included one column in this spreadsheet with my own classifications.Dan Gibson January 2021<br>
DOI: 10.6084/m9.figshare.15097107.v2
title: Data and software for "The effects of reputation on inequality in network cooperation games"

description: Processed experimental data, NetLogo script for agent-based model, and Python scripts for model and data analyses for the paper "The effects of reputation on inequality in network cooperation games" in <i>Philosophical Transactions of the Royal Society B.</i> The experimental data comes from the following studies:K. Kamei, L. Putterman, Play it again: Partner choice, reputation building and learning from finitely repeated dilemma games. <i>Econ. J.</i> 127, 1069–1095 (2017).G. E. Bolton, E. Katok, A. Ockenfels, How effective are electronic reputation mechanisms? An experimental investigation. <i>Manag. Sci.</i> 50, 1587–1602 (2004).G. E. Bolton, E. Katok, A. Ockenfels, Cooperation among strangers with limited information about reputation. <i>J. Public Econ.</i> 89, 1457–1468 (2005).I. Seinen, A. Schram, Social status and group norms: Indirect reciprocity in a repeated helping experiment. <i>Eur. Econ. Rev.</i> 50, 581–602 (2006).J. A. Cuesta, C. Gracia-Lázaro, A. Ferrer, Y. Moreno, A. Sánchez, Reputation drives cooperative behaviour and network formation in human groups. <i>Sci. Rep.</i> 5, 7843 (2015).D. Melamed, A. Harrell, B. Simpson, Cooperation, clustering, and assortative mixing in dynamic networks. <i>Proc. Natl. Acad. Sci.</i>, 201715357 (2018).D. O. Stahl, An experimental test of the efficacy of a simple reputation mechanism to solve social dilemmas. <i>J. Econ. Behav. Organ.</i> 94, 116–124 (2013).R.C. Bayer, Cooperation in partnerships: The role of breakups and reputation. <i>J. Institutional Theor. Econ. JITE</i> 172, 615–638 (2016).A. Harrell, D. Melamed, B. Simpson, The strength of dynamic ties: The ability to alter some ties promotes cooperation in those that cannot be altered. <i>Sci. Adv.</i> 4, eaau9109 (2018).
DOI: 10.6084/m9.figshare.28856306.v1
title: SRR7890835_mapped_ds0.1rgmd.bam

description: file for class
DOI: 10.6084/m9.figshare.20011625.v1
title: Supplementary Material for: The decision-making process regarding ovarian tissue cryopreservation in girls with Turner syndrome by patients, parents, and healthcare providers: a mixed-methods study

description: Introduction: Ovarian tissue cryopreservation (OTC) has proven to be effective in other patient groups, but the effectiveness in girls with TS is still unclear. Guidelines for counselling about OTC in TS are lacking. The aim of this study was to gain insight into the experiences of patients, parents, and healthcare providers with the decision-making process regarding OTC in girls with TS. Methods: Within a year after counselling, a survey was sent to 132 girls with TS and their parents. Furthermore, focus groups were conducted with (1) gynaecologists with subspecialty reproductive medicine, (2) paediatric endocrinologists, (3) parents of girls aged 2 to 12, and, (4) parents of girls aged 13 to 18. Transcripts were analysed using a thematic analysis approach. Results: The response rate of the survey was 45%. Of the survey respondents, 90% appreciated counselling regarding their future parenting options and considered it an addition to existing healthcare. Girls with TS and their parents indicated that the option of OTC raised hope for future genetic offspring, and instantly made them feel that their only option was to seize this opportunity. Gynaecologists and paediatricians found it challenging to truly make families grasp a realistic perspective of OTC in girls with TS. Discussion and conclusion: Offering young girls with TS the possibility of fertility preservation in an experimental setting raised high hopes and led to challenges for healthcare providers in ensuring a considered decision. The appropriate moment for counselling should be tailored to the individual and discussed with patient, parents and paediatrician.
DOI: 10.6084/m9.figshare.11413194.v3
title: Test

description: Not applicable
DOI: 10.6084/m9.figshare.24336769.v1
title: Dipt_Hym_phylogeny_SCO_alignments

description: The blind and wingless bee louse fly (Braula coeca) is an aberrant member of the family Drosophilidae that lives as a parasitic inquiline in the hive of the Western honey bee (Apis mellifera). The analysis of its genome identifies a case of horizontal transposon transfer and a striking parallel evolution in a set of ecologically-relevant gene families.
DOI: 10.6084/m9.figshare.3397603.v10
title: Custom toolbars and mini applications with Action Bar

description: The Action Bar ImageJ plugin facilitates creation of additional custom toolbars, using simple macro-like toolbar description file. Readers will learn how to setup a basic action bar, and how to use the latest features of this plugin. Button actions are basically macro programs, so action bars can interact with all standard ImageJ components. Primary use of these custom toolbars is to keep at hand often used commands, plugins and macros, but toolbars sets can be turned into mini applications with minimal effort. With these highly task-oriented applications, end users can focus on just using a simple system with absolutely no prior knowledge of ImageJ. This paper is aimed at ImageJ users with some previous experience with the macro language. First version was published in June 2006, and this is the support material for a workshop I first gave at the 2008 ImageJ conference in Luxembourg.
DOI: 10.17632/sptynbg59f.1
title: The Effect of High-Intensity Interval Training (HIIT) and Moderate-Intensity Continuous Training (MICT) on Cardiorespiratory Function in Healthy Elderly Individuals

description: The Effect of High-Intensity Interval Training (HIIT) and Moderate-Intensity Continuous Training (MICT) on Cardiorespiratory Function in Healthy Elderly Individuals
DOI: 10.6084/m9.figshare.13525553.v1
title: Development of a test and exercise programme for balance abilities in people with Multiple Sclerosis: data set

description: This dataset was used to analyse the self-reported difficulty of 19 balance exercises in people with multiple sclerosis.The data in the first column represent the participant ID. The data in the following columns refer to the 19 balance exercises. For example, 'e1' is the first balance exercise.The response options were rated as follows: 'very easy' (5), 'easy' (4), 'challenging' (3), 'very challenging' (2), 'too challenging, it is almost dangerous' (1), and 'dangerous, I would or could fall' (0).
DOI: 10.6084/m9.figshare.7973801.v1
title: Plant lamin-like proteins mediate chromatin tethering at the nuclear periphery

description: This is a collection of processed datasets for doing the analysis in:<br>Hu B, Wang N, Bi X, Karaaslan ES, Weber AL, Zhu W, Berendzen KW, Liu C. Plant Lamin-like Proteins Mediate Chromatin Tethering at the Nuclear Periphery. Data sets. Sequence Read Archive. https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA497671 (2019).Altogether, there are Hi-C matrices, ChIP-seq and ATAC-seq track files.<br><br>
DOI: 10.6084/m9.figshare.24179064.v1
title: All data of Politeness when native Japanese speakers and Uzbek Japanese learners give warnings about prohibited acts

description: This study compared warnings given by native Japanese speakers and Uzbek Japanese learners regarding prohibited acts. After clarifying the difference between prohibition and warning of prohibitions, we proposed a classification scheme for the latter speech act in terms of politeness. Data were elicited using a discourse completion task.
DOI: 10.6084/m9.figshare.14980017.v1
title: Supplementary Material for: Machine Learning Models for Predicting Neonatal Mortality: A Systematic Review

description: <b><i>Introduction:</i></b> Approximately 7,000 newborns die every day, accounting for almost half of child deaths under 5 years of age. Deciphering which neonates are at increased risk for mortality can have an important global impact. As such, integrating high computational technology (e.g., artificial intelligence [AI]) may help identify the early and potentially modifiable predictors of neonatal mortality. Therefore, the objective of this study was to collate, critically appraise, and analyze neonatal prediction studies that included AI. <b><i>Methods:</i></b> A literature search was performed in PubMed, Cochrane, OVID, and Google Scholar. We included studies that used AI (e.g., machine learning (ML) and deep learning) to formulate prediction models for neonatal death. We excluded small studies (<i>n</i> &lt; 500 individuals) and studies using only antenatal factors to predict mortality. Two independent investigators screened all articles for inclusion. The data collection consisted of study design, number of models, features used per model, feature importance, internal and/or external validation, and calibration analysis. Our primary outcome was the average area under the receiving characteristic curve (AUC) or sensitivity and specificity for all models included in each study. <b><i>Results:</i></b> Of 434 articles, 11 studies were included. The total number of participants was 1.26 M with gestational ages ranging from 22 weeks to term. Number of features ranged from 3 to 66 with timing of prediction as early as 5 min of life to a maximum of 7 days of age. The average number of models per study was 4, with neural network, random forest, and logistic regression comprising the most used models (58.3%). Five studies (45.5%) reported calibration plots and 2 (18.2%) conducted external validation. Eight studies reported results by AUC and 5 studies reported the sensitivity and specificity. The AUC varied from 58.3% to 97.0%. The mean sensitivities ranged from 63% to 80% and specificities from 78% to 99%. The best overall model was linear discriminant analysis, but it also had a high number of features (<i>n</i> = 17). <b><i>Discussion/Conclusion:</i></b> ML models can accurately predict death in neonates. This analysis demonstrates the most commonly used predictors and metrics for AI prediction models for neonatal mortality. Future studies should focus on external validation, calibration, as well as deployment of applications that can be readily accessible to health-care providers.
DOI: 10.6084/m9.figshare.21729035.v1
title: arv_death

description: ARV therapy for children and predictors of mortality
DOI: 10.6084/m9.figshare.3386089.v1
title: NPS herbicide usage data, Wagner et al. (2016d)

description: NPS herbicide usage data used in the publication<br>"Wagner, V., Antunes, P.M., Irvine, M., Nelson, C.R. (2016) Herbicide usage for invasive non-native plant management in wildland areas of North America. Journal of Applied Ecology"<br><br>Imported dataset was cleaned so that only rows that refer to exotic plant control were included, i.e. only rows with Purpose with "exotic plant control" or "exotic species control.<br><br>Excluded rows encompassed the following categories in "Purpose":"Alfalfa", "Corn", "Employee/Visitor Safe", "Forest protection", "Greenhouse Plants", "Historical Preserv.", <br>"Lawn/Turf Management", "Ornamental protect", "Other", "Past. protect.", "Research", "Public health", <br>"Roadside/trail maint", "Site protect/restore", "Soybean", "Structural Protection", "Utility right-of-way", <br>"wheat", and empty cells in "Purpose"<br><br>See accompanying R script (10.6084/m9.figshare.3386032) and publication for more details on data preparation and analysis.<br><br><br>
DOI: 10.6084/m9.figshare.95615.v1
title: Open Stent Design - Stent Calculator XLS

description: Overview of the Open Stent Design project, presented at the <em>FDA</em> / NHLBI / NSF Workshop on <em>Computer Methods</em> for Cardiovascular Devices, June 10-11, <em>2010</em>
DOI: 10.6084/m9.figshare.13220600.v1
title: Supplementary Material for: Models of Gastroenteropancreatic Neuroendocrine Neoplasms: Current Status and Future Directions

description: Gastroenteropancreatic neuroendocrine neoplasms (GEP-NENs) are a rare, heterogeneous group of tumors that originate from the endocrine system of the gastrointestinal tract and pancreas. GEP-NENs are subdivided according to their differentiation into well-differentiated neuroendocrine tumors (NETs) and poorly differentiated neuroendocrine carcinomas (NECs). Since GEP-NENs represent rare diseases, only limited data from large prospective, randomized clinical trials are available, and recommendations for treatment of GEP-NEN are in part based on data from retrospective analyses or case series. In this context, tractable disease models that reflect the situation in humans and that allow to recapitulate the different clinical aspects and disease stages of GEP-NET or GEP-NEC are urgently needed. In this review, we highlight available data on mouse models for GEP-NEN. We discuss how these models reflect tumor biology of human disease and whether these models could serve as a tool for understanding the pathogenesis of GEP-NEN and for disease modeling and pharmacosensitivity assays, facilitating prediction of treatment response in patients. In addition, open issues applicable for future developments will be discussed.
DOI: 10.6084/m9.figshare.12746198.v1
title: Negative play contagion in calves

description: Data on play duration, play bouts, synchrony of play and diurnal pattern of play of dairy calves<br>
DOI: 10.6084/m9.figshare.20452437.v1
title: NIU_Prairie_Vole_Fecal_Project_1_Supplemental_Files_Revised

description: Tables contain raw data for fecal and serum metabolites from prairie voles either housed for four weeks with a same sex (female) sibling or in isolation. Files have been revised to contain metadata. Additional files have been added containing animal identifiers and microbiome processing data.
DOI: 10.6084/m9.figshare.7177565.v1
title: Dataset 6 Essentiality Confidence scores.xlsx

description: Essentiality Confidence scores
DOI: 10.6084/m9.figshare.28835711.v1
title: Virscan Top Public Reactive Peptides

description: The most frequently publicly reactive peptides across sample cohort. For each row in the edgeR_enriched_log2foldchg.csv file, the total hit frequency is calculated and sorted in descending order. Average log2 fold change of hits is used to break ties. These are used to crease unbiased figures in the summary heatmap shown in Supplemental Figure 2 of the manuscript.
DOI: 10.6084/m9.figshare.1224314.v2
title: Highly Cited Documents on Google Scholar (1950-2013)

description: This dataset contains: - A sample of 64,000 highly cited documents published in the period 1950-2013, collected from Google Scholar on the 28th of May, 2014. - List of clean references of the top 1% most cited documents in Google Scholar (640 documents) - Study case: different versions (detected and undetected by Google Scholar) for the work "A Mathematical Theory of Communication", by Claude Shannon.- Frequency table: number of highly-cited documents in our sample published in WoS-covered journals
DOI: 10.17632/m6bbr23z9g
title: Authentic vs. Hubristic Proud Consumers: Two Forms of Status Orientation Underlying New Luxury Consumption

description: Incorporating motivation for two forms of social status—prestige and dominance, this study examined the influence of authentic and hubristic pride on consumers' preferences and purchases of new luxury products. Consumers with high authentic pride are found to seek prestige status, while those with high hubristic pride are inclined to achieve dominance status. Moreover, consumers with high authentic pride hold more positive brand attitudes and stronger purchase intentions for expertise-positioned luxury products. Consumers' motivation for prestige status mediates the relationship between authentic pride and their preferences and purchase intentions for such products. However, we did not find reliable evidence for the impact of hubristic pride on these outcomes. Overall, the study sheds light on the mechanisms underlying the coexistence of conspicuous and inconspicuous luxury consumption in the current market. Findings have important implications for marketers seeking to optimize marketing and advertising programs for luxury products. 

The dataset consists of the following items:

Data for PilotStudy:  This component of the dataset includes the responses (CSV file) and syntax for PilotStudy. In PilotStudy, CFA was conducted for the revision of authentic and hubristic pride scale.

Data for Studies 1-3:  This component of the dataset includes the responses (CSV file) and syntax for Studies 1-3. It sheds light on the relationships between two-facets of pride, two forms of social status, and behaviors related to new luxury Consumption.