cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24465712.v1
title: The complete chloroplast genome of <i>Ocimum basilicum</i> L. var. <i>basilicum</i> (Lamiaceae) and its phylogenetic analysis

description: <i>Ocimum basilicum</i> L. var. <i>basilicum</i> (Sweet Basil) is an aromatic herb belonging to the family Lamiaceae and is known for its medicinal uses. It is commonly used in traditional medicine for its therapeutic value, including anti-allergic, anti-inflammatory, antioxidant, antitumor, and antimicrobial properties. In this study, we generated the complete chloroplast genome sequence of <i>O. basilicum</i> var. <i>basilicum</i> using Illumina paired-end sequencing data. The chloroplast genome was 152,407 bp in length, containing a large single-copy (LSC) region of 83,409 bp and a small single-copy region (SSC) of 17,604 bp, separated by a pair of inverted repeats (IRs) of 25,697 bp. The genome contained 134 genes, including 89 protein-coding, 37 tRNA, and eight rRNA genes. Nine genes had one intron, two genes had two introns, and others did not have any intron. Overall GC content of the chloroplast genome was 38%, while that of LSC, SSC, and IR regions was 35.9%, 31.6%, and 43.1%, respectively. Phylogenetic analysis of the chloroplast genomes revealed that <i>O. basilicum</i> var. <i>basilicum</i> was closely related to <i>Ocimum basilicum</i> from the <i>Ocimum</i> species.
DOI: 10.6084/m9.figshare.24565753
title: The complete chloroplast genome of <i>Hedychium flavum</i> Roxb., an ornamental, edible and medicinal plant

description: <i>Hedychium flavum</i> Roxb. 1820 is a perennial herb mainly distributed in China, India, Myanmar and Thailand with ornamental, edible and medicinal value. It is extensively cultivated as a source of aromatic essential oils, ornamental plant, food flavorings and vegetables, and folk medicine. In this study, we sequence the complete chloroplast genome of <i>H. flavum</i> by <i>de novo</i> assembly. The assembled genome has a typical quadripartite circular structure with 163,909 bp in length, containing a large single-copy region (LSC, 88,589 bp), a small single-copy region (SSC, 15,762 bp), and two inverted repeat regions (IRs, 29,779 bp). The cp genome contains 133 genes, including 87 protein-coding genes, 38 tRNA genes and 8 rRNA genes. Phylogenetic analysis based on the complete cp genome shows a close affinity of <i>H. flavum</i> and <i>H. neocarneum</i> with 100% bootstrap support. This study will provide useful genetic resource for further phylogenetic analysis of the genus <i>Hedychium</i> and Zingiberaceae.
DOI: 10.6084/m9.figshare.24475068
title: The complete chloroplast genome of <i>Callicarpa dichotoma</i> (Lour.) K.Koch (Lamiaceae)

description: <i>Callicarpa dichotoma</i> (Lour.) K.Koch is a shrub species with distribution from East Asia to Southeast Asia. We assembled and annotated for the first time the complete chloroplast (cp) genome of <i>C. dichotoma</i>. The cp genome of <i>C. dichotoma</i> is 154,110 bp long with the GC content of 38.09% and consists of four subregions: a large single-copy (LSC) region of 84,915 bp, a small single-copy (SSC) region of 17,783 bp and a pair of inverted repeats (IRs) of 25,706 bp each. The cp genome of <i>C. dichotoma</i> encodes a total of 114 unique genes, comprising 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic trees based on the coding sequences strongly support the position of <i>C. dichotoma</i> within the genus <i>Callicarpa</i>, confirming the previously reported monophyly of the genus.
DOI: 10.6084/m9.figshare.24565753.v1
title: The complete chloroplast genome of <i>Hedychium flavum</i> Roxb., an ornamental, edible and medicinal plant

description: <i>Hedychium flavum</i> Roxb. 1820 is a perennial herb mainly distributed in China, India, Myanmar and Thailand with ornamental, edible and medicinal value. It is extensively cultivated as a source of aromatic essential oils, ornamental plant, food flavorings and vegetables, and folk medicine. In this study, we sequence the complete chloroplast genome of <i>H. flavum</i> by <i>de novo</i> assembly. The assembled genome has a typical quadripartite circular structure with 163,909 bp in length, containing a large single-copy region (LSC, 88,589 bp), a small single-copy region (SSC, 15,762 bp), and two inverted repeat regions (IRs, 29,779 bp). The cp genome contains 133 genes, including 87 protein-coding genes, 38 tRNA genes and 8 rRNA genes. Phylogenetic analysis based on the complete cp genome shows a close affinity of <i>H. flavum</i> and <i>H. neocarneum</i> with 100% bootstrap support. This study will provide useful genetic resource for further phylogenetic analysis of the genus <i>Hedychium</i> and Zingiberaceae.
DOI: 10.6084/m9.figshare.24475068.v1
title: The complete chloroplast genome of <i>Callicarpa dichotoma</i> (Lour.) K.Koch (Lamiaceae)

description: <i>Callicarpa dichotoma</i> (Lour.) K.Koch is a shrub species with distribution from East Asia to Southeast Asia. We assembled and annotated for the first time the complete chloroplast (cp) genome of <i>C. dichotoma</i>. The cp genome of <i>C. dichotoma</i> is 154,110 bp long with the GC content of 38.09% and consists of four subregions: a large single-copy (LSC) region of 84,915 bp, a small single-copy (SSC) region of 17,783 bp and a pair of inverted repeats (IRs) of 25,706 bp each. The cp genome of <i>C. dichotoma</i> encodes a total of 114 unique genes, comprising 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic trees based on the coding sequences strongly support the position of <i>C. dichotoma</i> within the genus <i>Callicarpa</i>, confirming the previously reported monophyly of the genus.
DOI: 10.6084/m9.figshare.24465665
title: The complete mitochondrial genome of <i>Pseudofabraea citricarpa</i> (Dermateaceae: Helotiales) causing <i>Citrus</i> target spot

description: <i>Pseudofabraea citricarpa</i> (Dermateaceae: Helotiales) is known as a significant pathogen causing <i>Citrus</i> target spot disease and results in profound yield loss. In the present study, the complete mitochondrial genome (mitogenome) determined based on next-generation sequencing technology. The circular mitogenome (56,935 bp) comprised 14 conserved protein-coding genes (PCGs), 16 ORFs, two ribosomal RNA genes (rns and rnl), one non-coding RNA gene (rnpB), one ribosomal protein S3 (rps3) and 28 transfer RNA (tRNA) genes. The overall base composition is as follows: 36.08% A, 35.25% T, 13.04% C, and 15.63% G, with a GC content of 28.70%. The phylogenetic analysis shows that <i>P. citricarpa</i>, belonging to Dermateaceae, forms a separate clade and is sister to Sclerotiniaceae. The mitogenome of <i>P. citricarpa</i> reported in this study provides more molecular data for further research on the evolutionary relationships of Helotiales.
DOI: 10.6084/m9.figshare.24465665.v1
title: The complete mitochondrial genome of <i>Pseudofabraea citricarpa</i> (Dermateaceae: Helotiales) causing <i>Citrus</i> target spot

description: <i>Pseudofabraea citricarpa</i> (Dermateaceae: Helotiales) is known as a significant pathogen causing <i>Citrus</i> target spot disease and results in profound yield loss. In the present study, the complete mitochondrial genome (mitogenome) determined based on next-generation sequencing technology. The circular mitogenome (56,935 bp) comprised 14 conserved protein-coding genes (PCGs), 16 ORFs, two ribosomal RNA genes (rns and rnl), one non-coding RNA gene (rnpB), one ribosomal protein S3 (rps3) and 28 transfer RNA (tRNA) genes. The overall base composition is as follows: 36.08% A, 35.25% T, 13.04% C, and 15.63% G, with a GC content of 28.70%. The phylogenetic analysis shows that <i>P. citricarpa</i>, belonging to Dermateaceae, forms a separate clade and is sister to Sclerotiniaceae. The mitogenome of <i>P. citricarpa</i> reported in this study provides more molecular data for further research on the evolutionary relationships of Helotiales.
DOI: 10.17632/ybvcdmtrpc.1
title: TPS coordinate files of horse shape space data

description: Based on the work from Druml et al. 2015 (https://doi.org/10.1017/S1751731114003309 ), and the expanded version of Gmel et al. 2022 (https://doi.org/10.3390/ani12172186), the horse shape space model was applied on 2489 images of 1241 horses photographed from the side in open posture. A mix of landmarks and converted semi-landmarks result in 253 landmarks per image and were saved as tps files. These tps files are available for download in this repository. The tps files are sorted by horse breed (WB=Warmblood, SHA=Shagya Arabian, PRE=Pura Raza Español, LUS=Lusitano, LIP=Lipizzaner, FM=Franches-Montagnes, AR=Purebred Arabian). Each folder also contains R code lines for transforming the data into .csv files, and a metafile describing the individual horse identifier, followed by the sex, year of birth, year of the photograph to derive age on the photograph, wither’s height, country of origin of the photograph, and the scores for the six posture parameters previously described in Gmel et al. (https://doi.org/10.1371/journal.pone.0202931).
DOI: 10.17632/v6gjdp8jr5.1
title: Evaluation and Analysis of Strength Values assessed Pre and Post pitch session in an MLS Team During the Season and After the Off Season.

description: The main objective was to determine the strength and power values in a professional Major League Soccer (MLS) team. Twenty-two professional football players from an MLS club, excluding goalkeepers, participated. Six assessments were conducted, including three pre- and three post-tests, assessing eccentric hamstring strength in the Nordic curl using the NordBord, maximal isometric strength in hip adduction-abduction with ForceFrame, and lower body power with CMJ in ForceDecks. The strength and power values established with the Pre and Post assessments show a CMJ height of 43.96 ± 3.92cm, in Nordic curl 382.46±67.79N-I and 370.66±65.84N-D, in hip adduction 414.79±73.86N-I and 424.02±71.88N (R), and in hip abduction 411.93±60.19N-I and 420.77±60.54N-R. The comparison between Pre and Post evaluations showed statistically lower values (p&lt;0.05) in the Nordic Curl, hip adduction and abduction, while the CMJ showed no significant changes (p=0.056). On the contrary, after the transitional period only the CMJ showed lower values (p&lt;0.05) compared to the Nordic Curl, and hip adduction and abduction (p˃0.05). The data studied show lower post-session strength values, except for power expressed in CMJ height. After the transitional period, hamstring and hip strength (ABD-ADD) did not show significant changes, but CMJ height did.
DOI: 10.34740/kaggle/dsv/7947489
title: HTC_dataset_blends
DOI: 10.17632/3dbv38tjxm.1
title: Homeostatic Dysregulation of Systemic CD8+ T Cell Compartment in Lung Cancer Patients

description: Supporting data values
DOI: 10.6073/pasta/8cca77141f764c8e489df442adf832d4
title: Temperature logger deployment methods and irradiance-biased temperature data, King Abdullah University of Science and Technology, Red Sea, 2023.

description: Solar irradiance can offset the temperature recorded by underwater sensing instruments (aka "loggers"). We collected temperature and PAR (photosynthetic active radiation) data during two short-term in situ deployments on a shallow fringing reef adjacent to the King Abdullah University of Science and Technology (KAUST) in the Red Sea. The first deployment quantified the measurement bias due to solar heating over five days in February 2023 while the second compared the effect of different shading methods on logger performance over 24 hours in June 2023. We also recorded temperature in a controlled calibration bath in the lab with ten of the most widely used loggers to further assess their accuracy, response time, and intra-logger variation. Finally, to understand current practices of measuring temperature on coral reefs, we summarized logger deployment method details from a literature review of coral reef studies published from 2013 to 2022. Such details included how often loggers recorded the temperature, the depth where loggers were deployed, and whether the authors reported shading or protecting their loggers. This data package is complete and part of a larger project that aims to develop an instrument deployment framework for restoration-based reef monitoring, which includes instrument recommendations and deployment guidelines.
DOI: 10.17632/mdp72xhy9n.1
title: OPEC plus Dataset to Investigate Effect of Financial Development on Energy Intensity Considering Innovation and Technology

description: A panel dataset consisting of 21 countries that are member of the OPEC+ including Algeria, Angola, Azerbaijan, Bahrain, Brunei, Republic of the Congo, Equatorial Guinea, Gabon, Iran, Iraq, Kazakhstan, Kuwait, Libya, Malaysia, Mexico, Nigeria, Oman, Russia, Saudi Arabia, Sudan, the United Arab Emirates, and Venezuela during 2000 - 2020 and 6 variables including energy intensity, R&D expenditure as a percentage of GDP, bank index, market index, total index, and trade openness to investigate the effect of financial development on energy intensity at different levels of innovation and technology.
DOI: 10.34849/vuwqop/uko3mv
title: default_360x720_no.tar.gz

description: :unav
DOI: 10.34849/vuwqop/ipfbom
title: reduced_360x720_no.tar.gz

description: :unav
DOI: 10.34849/vuwqop
title: ErfNet based models for Panoptic Segmentation on Cityscape dataset (Pytorch, Jit)

description: Panoptic segmentation is a task that aims to combine semantic segmentation and instance segmentation in a single prediction and, therefore, it is of high interest for autonomous vehicles. This works presents a light-weight solution based on a convolutional neural network for panoptic segmentation capable of running on embedded GPUs. The solution is built upon an ERFNet backbone, with a shared encoder and two identical decoders to solve the two sub-tasks. The semantic decoder feeds into a single head creating the semantic segmentation prediction whilst the instance decoder has two heads that predict class-agnostic centers and offsets. These three outputs are then post-processed to create soft attention masks that help generate the final panoptic prediction. We defined a model composed per 3 entity: - An ERFNet encoder with residual connections to the semantic decoder. - An ERFNet semantic decoder, receiving residual connections from the encoder and feeding others to the instance decoder. - An ERFNet instance decoder, receiving residual connections from the semantic one In order to study the performance of different implementations, we defined the following variations available in this dataset (each archive has a read_me): - Default model with residual connections (default_360x720_yes.tar.gz) - Default model without residual connections (default_360x720_no.tar.gz) - Model with reduced encoder without residual connections (reduced_360x720_no.tar.gz)
DOI: 10.34849/vuwqop/qncxuc
title: default_360x720_yes.tar.gz

description: :unav
DOI: 10.5281/zenodo.10878473
title: A checklist of the spiders (Arachnida, Araneae) of the Garden Route National Park

description: An annotated species list of spiders from the Garden Route National Park (GRNP) is provided. The checklist was compiled from data collected from the South African National Survey of Arachnida (SANSA) database. A total of 245 species from 52 families and 166 genera are presently protected in the park. The most species-rich families are the Thomisidae (34 spp.), Salticidae (28 spp.) and Araneidae (22 spp.), while 15 families are represented by singletons. The global distribution, endemicity and conservation status for each species is provided. A large percentage (83.2%) of the species have a wide distribution range and are of Least Concern while 17 species are Data Deficient and 10 species are of special concern. Seven species are known only from the Garden Route National
DOI: 10.5281/zenodo.10878474
title: A checklist of the spiders (Arachnida, Araneae) of the Garden Route National Park

description: An annotated species list of spiders from the Garden Route National Park (GRNP) is provided. The checklist was compiled from data collected from the South African National Survey of Arachnida (SANSA) database. A total of 245 species from 52 families and 166 genera are presently protected in the park. The most species-rich families are the Thomisidae (34 spp.), Salticidae (28 spp.) and Araneidae (22 spp.), while 15 families are represented by singletons. The global distribution, endemicity and conservation status for each species is provided. A large percentage (83.2%) of the species have a wide distribution range and are of Least Concern while 17 species are Data Deficient and 10 species are of special concern. Seven species are known only from the Garden Route National
DOI: 10.17632/6rkxx9j2wr.3
title: code

description: Boosting the Vat Photopolymerization Fidelity through a Machine Learning based Boundary Prediction
DOI: 10.17632/f4tbc642bj.1
title: Does Social and Organizational Support Influence Emotional Intelligence Training Outcomes?

description: Given the dearth of systematic research and inconclusive results regarding the effectiveness of emotional intelligence (EI) training in adult training, this study was conducted to evaluate the effectiveness of EI training. This study aimed to assess the effectiveness of EI training on learning and transfer outcomes, considering underexplored moderation of social and organizational support with experimental and longitudinal research design. Training transfer was measured through changes in organizational citizenship behavior (OCB) and counterproductive work behavior (CWB). Partici-pants self-assessed their OCB and CWB levels, while their supervisors also provided evaluations, allowing for separate analysis. Data, from a sample comprising 176 government officials, were collected across different periods and analyzed employing diverse analytical tools. The results re-vealed positive effects of EI training on training outcomes in both samples but positive moderation effect of social and organizational support on the effect of EI training on training outcomes was observed in the self-evaluation sample but not in the supervisor evaluation sample. The findings advance the debate on social exchange theory and organizational support theory by showing the boundary condition of their applicability. Furthermore, this study clarifies the impact of EI training on training outcomes by emphasizing the nuanced role of social and organizational support.
DOI: 10.5281/zenodo.10867976
title: Dataset for research paper entitled Adaptive Phase or Variant Formation at the Austenite/Twinned Martensite Interface in Modulated Ni–Mn–Ga Martensite

description: The dataset contains the experimental result concerning in-situ synchrotron and SEM/EBSD measurements as a function of temperature. The list of files is listed below:

The dataset is composed of both the raw and processed data:

X-ray phase analysis - performed with a synchrotron radiation energy 87.1 KeV.



Origin file 1 - Diffraction experiments made on NiMnGa single crystals below and above Ms temperature

2D Diffraction pattern for 10M 10M’ Mt, and A structures.


TEM experiments - Microstructural observations were carried out by ThermoFisher Scientific TitanThemis Cs corrected 200 kV scanning /transmission electron microscope (S/TEM) equipped with SuperX EDX detector system. Thin foil for analysis was prepared by TEM observations were prepared with a TenuPol-5 double jet electropolisher using an electrolyte of nitric acid (70%) and methanol (30%) at -25 °C.

·      File 1 set of HRTEM images showing modulation boundaries

·      File 2 set of HRTEM images showing a/b boundaries

SEM/EBSD - FEI Quanta 3D FEG SEM equipped with a TSL system and a Murano heating stage. To analyze the lattice parameter changes, a crystallographic analysis of lattice metric (CALM) was used. This method does not need a standard for indexing or lattice constant determination. The lattice metric (lattice parameters) was derived through the reconstruction of the experimental EBSD pattern. In the first step, centers of Kikuchi band traces were detected from the EBSD diffraction pattern. Then, using information about the diffraction projection center, 20 to 100 independent reflectors were reconstructed in the reciprocal space. The final step involves a search for primitive lattice vectors which are fulfilling translational symmetry conditions for all reflectors. Reconstructed vectors are recomputed to the higher symmetry lattices with a relative error lower than 0.1%Thermogravimetric curves obtained for the decomposition of powder after synthesis at 500 rpm.



Origin file 2 Relation between a/c lattice parameters

Origin file 3 Relation between a/c lattice parameters

SEM/BSE pictures showing austenite twinned/martensite interface

Video 1 shows in-situ SEM/BSE with martensitic transformation and one planar austenite/twinned martensite interface during cooling

Video 2 shows set of Kikuchi pattern across Austenite martensite phase indicating elastic nature of the martensitic transformation
DOI: 10.5281/zenodo.10867977
title: Dataset for research paper entitled Adaptive Phase or Variant Formation at the Austenite/Twinned Martensite Interface in Modulated Ni–Mn–Ga Martensite

description: The dataset contains the experimental result concerning in-situ synchrotron and SEM/EBSD measurements as a function of temperature. The list of files is listed below:

The dataset is composed of both the raw and processed data:

X-ray phase analysis - performed with a synchrotron radiation energy 87.1 KeV.



Origin file 1 - Diffraction experiments made on NiMnGa single crystals below and above Ms temperature

2D Diffraction pattern for 10M 10M’ Mt, and A structures.


TEM experiments - Microstructural observations were carried out by ThermoFisher Scientific TitanThemis Cs corrected 200 kV scanning /transmission electron microscope (S/TEM) equipped with SuperX EDX detector system. Thin foil for analysis was prepared by TEM observations were prepared with a TenuPol-5 double jet electropolisher using an electrolyte of nitric acid (70%) and methanol (30%) at -25 °C.

·      File 1 set of HRTEM images showing modulation boundaries

·      File 2 set of HRTEM images showing a/b boundaries

SEM/EBSD - FEI Quanta 3D FEG SEM equipped with a TSL system and a Murano heating stage. To analyze the lattice parameter changes, a crystallographic analysis of lattice metric (CALM) was used. This method does not need a standard for indexing or lattice constant determination. The lattice metric (lattice parameters) was derived through the reconstruction of the experimental EBSD pattern. In the first step, centers of Kikuchi band traces were detected from the EBSD diffraction pattern. Then, using information about the diffraction projection center, 20 to 100 independent reflectors were reconstructed in the reciprocal space. The final step involves a search for primitive lattice vectors which are fulfilling translational symmetry conditions for all reflectors. Reconstructed vectors are recomputed to the higher symmetry lattices with a relative error lower than 0.1%Thermogravimetric curves obtained for the decomposition of powder after synthesis at 500 rpm.



Origin file 2 Relation between a/c lattice parameters

Origin file 3 Relation between a/c lattice parameters

SEM/BSE pictures showing austenite twinned/martensite interface

Video 1 shows in-situ SEM/BSE with martensitic transformation and one planar austenite/twinned martensite interface during cooling

Video 2 shows set of Kikuchi pattern across Austenite martensite phase indicating elastic nature of the martensitic transformation