cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3518894
title: Appendix A. Detailed tables of parameters used for simulations and tables and figures of estimations of specific posterior distributions issued from simulations and from data.

description: Detailed tables of parameters used for simulations and tables and figures of estimations of specific posterior distributions issued from simulations and from data.
DOI: 10.6084/m9.figshare.3518894.v1
title: Appendix A. Detailed tables of parameters used for simulations and tables and figures of estimations of specific posterior distributions issued from simulations and from data.

description: Detailed tables of parameters used for simulations and tables and figures of estimations of specific posterior distributions issued from simulations and from data.
DOI: 10.6084/m9.figshare.3518891
title: Supplement 1. Commented BUGS code that refers to scenario R3 with common αi’s and hierarchical βi’s.

description: File ListLifeCycleModel.txt (MD5: 245338d073342e885edb233f8fa7b050)Description LifeCycleModel.txt is a BUGS code to estimate parameters of a full life cycle model, including (i) outputs of an individual-based model for larval drift and survival that provided yearly estimates of the dispersion and mortality of eggs and larvae, from spawning grounds to settlement in several coastal nurseries; (ii) a habitat suitability model, based on juvenile trawl surveys coupled with a geographic information system, to estimate juvenile densities and surface areas of suitable juvenile habitat in each nursery sector; and (iii) a statistical catch-at-age model for the estimation of the numbers-at-age and the fishing mortality on subadults and adults. The present code refers to a specific scenario of the larvae to juvenile mortality process tested in the associated paper. This scenario (R3) assumes a density-independent mortality parameter common to all nurseries (a_BH) and a nursery-specific density-dependent mortality parameter (b_BH). Comment lines specify the inputs to the function and the outputs from the function. The code may be called from an OpenBUGS program.
DOI: 10.6084/m9.figshare.3518891.v1
title: Supplement 1. Commented BUGS code that refers to scenario R3 with common αi’s and hierarchical βi’s.

description: File ListLifeCycleModel.txt (MD5: 245338d073342e885edb233f8fa7b050)Description LifeCycleModel.txt is a BUGS code to estimate parameters of a full life cycle model, including (i) outputs of an individual-based model for larval drift and survival that provided yearly estimates of the dispersion and mortality of eggs and larvae, from spawning grounds to settlement in several coastal nurseries; (ii) a habitat suitability model, based on juvenile trawl surveys coupled with a geographic information system, to estimate juvenile densities and surface areas of suitable juvenile habitat in each nursery sector; and (iii) a statistical catch-at-age model for the estimation of the numbers-at-age and the fishing mortality on subadults and adults. The present code refers to a specific scenario of the larvae to juvenile mortality process tested in the associated paper. This scenario (R3) assumes a density-independent mortality parameter common to all nurseries (a_BH) and a nursery-specific density-dependent mortality parameter (b_BH). Comment lines specify the inputs to the function and the outputs from the function. The code may be called from an OpenBUGS program.
DOI: 10.6084/m9.figshare.3518888
title: Appendix A. A table summarizing fish species and sizes used in behavioral observations.

description: A table summarizing fish species and sizes used in behavioral observations.
DOI: 10.6084/m9.figshare.3518888.v1
title: Appendix A. A table summarizing fish species and sizes used in behavioral observations.

description: A table summarizing fish species and sizes used in behavioral observations.
DOI: 10.6084/m9.figshare.3518885
title: Appendix B. A table summarizing benthos targeted during forays by each functional group.

description: A table summarizing benthos targeted during forays by each functional group.
DOI: 10.6084/m9.figshare.3518885.v1
title: Appendix B. A table summarizing benthos targeted during forays by each functional group.

description: A table summarizing benthos targeted during forays by each functional group.
DOI: 10.6084/m9.figshare.3518882
title: Appendix C. A table summarizing relationships between foraging metrics and body size for each functional group.

description: A table summarizing relationships between foraging metrics and body size for each functional group.
DOI: 10.6084/m9.figshare.3518882.v1
title: Appendix C. A table summarizing relationships between foraging metrics and body size for each functional group.

description: A table summarizing relationships between foraging metrics and body size for each functional group.
DOI: 10.6084/m9.figshare.3518879
title: Appendix D. A table summarizing relationships between foraging metrics and body size at the family level.

description: A table summarizing relationships between foraging metrics and body size at the family level.
DOI: 10.6084/m9.figshare.3518879.v1
title: Appendix D. A table summarizing relationships between foraging metrics and body size at the family level.

description: A table summarizing relationships between foraging metrics and body size at the family level.
DOI: 10.6084/m9.figshare.3518876
title: Appendix E. A figure showing relationships between foraging metrics and body size at the family level.

description: A figure showing relationships between foraging metrics and body size at the family level.
DOI: 10.6084/m9.figshare.3518876.v1
title: Appendix E. A figure showing relationships between foraging metrics and body size at the family level.

description: A figure showing relationships between foraging metrics and body size at the family level.
DOI: 10.6084/m9.figshare.3518873
title: Appendix A. Names and codes of the Ecological Drainage Units depicted in Figs. 3–5.

description: Names and codes of the Ecological Drainage Units depicted in Figs. 3–5.
DOI: 10.6084/m9.figshare.3518873.v1
title: Appendix A. Names and codes of the Ecological Drainage Units depicted in Figs. 3–5.

description: Names and codes of the Ecological Drainage Units depicted in Figs. 3–5.
DOI: 10.6084/m9.figshare.3518870
title: Appendix A. List of problematic species lumped into morphospecies.

description: List of problematic species lumped into morphospecies.
DOI: 10.6084/m9.figshare.3518867
title: Appendix B. List of plant species sampled, guild, and disturbance class.

description: List of plant species sampled, guild, and disturbance class.
DOI: 10.6084/m9.figshare.3518867.v1
title: Appendix B. List of plant species sampled, guild, and disturbance class.

description: List of plant species sampled, guild, and disturbance class.
DOI: 10.6084/m9.figshare.3518864
title: Appendix C. Results of randomized complete block design PERMANOVA analysis to assess differences in ground-cover vegetation among hardwood removal treatment plots from 1994 to 2010.

description: Results of randomized complete block design PERMANOVA analysis to assess differences in ground-cover vegetation among hardwood removal treatment plots from 1994 to 2010.
DOI: 10.6084/m9.figshare.3518864.v1
title: Appendix C. Results of randomized complete block design PERMANOVA analysis to assess differences in ground-cover vegetation among hardwood removal treatment plots from 1994 to 2010.

description: Results of randomized complete block design PERMANOVA analysis to assess differences in ground-cover vegetation among hardwood removal treatment plots from 1994 to 2010.
DOI: 10.6084/m9.figshare.3518861
title: Appendix D. Results of one-way PERMANOVA analysis to assess differences in ground-cover vegetation between hardwood removal treatments and reference plots from 1994 to 2010.

description: Results of one-way PERMANOVA analysis to assess differences in ground-cover vegetation between hardwood removal treatments and reference plots from 1994 to 2010.
DOI: 10.6084/m9.figshare.3518861.v1
title: Appendix D. Results of one-way PERMANOVA analysis to assess differences in ground-cover vegetation between hardwood removal treatments and reference plots from 1994 to 2010.

description: Results of one-way PERMANOVA analysis to assess differences in ground-cover vegetation between hardwood removal treatments and reference plots from 1994 to 2010.
DOI: 10.6084/m9.figshare.3518858
title: Appendix E. Randomized complete block design ANCOVA using 1994 proportional similarity to reference values as the covariate and proportional similarity to reference as response variable for each sampling year.

description: Randomized complete block design ANCOVA using 1994 proportional similarity to reference values as the covariate and proportional similarity to reference as response variable for each sampling year.
DOI: 10.6084/m9.figshare.3518855
title: Appendix F. Results of the randomized complete block design ANCOVA for ground-cover species richness at the treatment scale by year.

description: Results of the randomized complete block design ANCOVA for ground-cover species richness at the treatment scale by year.
DOI: 10.6084/m9.figshare.3518855.v1
title: Appendix F. Results of the randomized complete block design ANCOVA for ground-cover species richness at the treatment scale by year.

description: Results of the randomized complete block design ANCOVA for ground-cover species richness at the treatment scale by year.
DOI: 10.6084/m9.figshare.3518852
title: Appendix G. Figures showing ground-cover species richness at the plot, sub-plot, and quadrat scales for treatment and reference plots from 1994 to 2010.

description: Figures showing ground-cover species richness at the plot, sub-plot, and quadrat scales for treatment and reference plots from 1994 to 2010.
DOI: 10.6084/m9.figshare.3518852.v1
title: Appendix G. Figures showing ground-cover species richness at the plot, sub-plot, and quadrat scales for treatment and reference plots from 1994 to 2010.

description: Figures showing ground-cover species richness at the plot, sub-plot, and quadrat scales for treatment and reference plots from 1994 to 2010.
DOI: 10.6084/m9.figshare.3518849
title: Appendix H. Tables of results of the randomized complete block design ANCOVA for ground-cover species richness at the plot, sub-plot, and quadrat scale by year.

description: Tables of results of the randomized complete block design ANCOVA for ground-cover species richness at the plot, sub-plot, and quadrat scale by year.
DOI: 10.6084/m9.figshare.3518849.v1
title: Appendix H. Tables of results of the randomized complete block design ANCOVA for ground-cover species richness at the plot, sub-plot, and quadrat scale by year.

description: Tables of results of the randomized complete block design ANCOVA for ground-cover species richness at the plot, sub-plot, and quadrat scale by year.
DOI: 10.6084/m9.figshare.3518846
title: Appendix I. Results of the randomized complete block design ANCOVA for ground-cover evenness at the treatment scale by year.

description: Results of the randomized complete block design ANCOVA for ground-cover evenness at the treatment scale by year.
DOI: 10.6084/m9.figshare.3518846.v1
title: Appendix I. Results of the randomized complete block design ANCOVA for ground-cover evenness at the treatment scale by year.

description: Results of the randomized complete block design ANCOVA for ground-cover evenness at the treatment scale by year.
DOI: 10.6084/m9.figshare.3518843
title: Appendix J. Results of the randomized complete block design ANCOVA for ground-cover average log abundance at the treatment scale by year.

description: Results of the randomized complete block design ANCOVA for ground-cover average log abundance at the treatment scale by year.
DOI: 10.6084/m9.figshare.3518843.v1
title: Appendix J. Results of the randomized complete block design ANCOVA for ground-cover average log abundance at the treatment scale by year.

description: Results of the randomized complete block design ANCOVA for ground-cover average log abundance at the treatment scale by year.
DOI: 10.6084/m9.figshare.3518840
title: Appendix K. Results of the randomized complete block design ANCOVA for ground-cover abundance at the treatment scale by year and plant guild.

description: Results of the randomized complete block design ANCOVA for ground-cover abundance at the treatment scale by year and plant guild.
DOI: 10.6084/m9.figshare.3518837
title: Appendix L. Midstory abundance at the treatment scale.

description: Midstory abundance at the treatment scale.
DOI: 10.6084/m9.figshare.3518837.v1
title: Appendix L. Midstory abundance at the treatment scale.

description: Midstory abundance at the treatment scale.
DOI: 10.6084/m9.figshare.3518834
title: Appendix M. Results of the randomized complete block design ANCOVA for number of ruderal species in the ground cover at the treatment scale by year.

description: Results of the randomized complete block design ANCOVA for number of ruderal species in the ground cover at the treatment scale by year.
DOI: 10.6084/m9.figshare.3518834.v1
title: Appendix M. Results of the randomized complete block design ANCOVA for number of ruderal species in the ground cover at the treatment scale by year.

description: Results of the randomized complete block design ANCOVA for number of ruderal species in the ground cover at the treatment scale by year.
DOI: 10.6084/m9.figshare.3518831
title: Appendix N. Indicator species and change in frequency and abundance for reference conditions and treatment sites.

description: Indicator species and change in frequency and abundance for reference conditions and treatment sites.
DOI: 10.6084/m9.figshare.3518831.v1
title: Appendix N. Indicator species and change in frequency and abundance for reference conditions and treatment sites.

description: Indicator species and change in frequency and abundance for reference conditions and treatment sites.
DOI: 10.6084/m9.figshare.3518828
title: Appendix A. Two parameters for correlated random walk simulation: reported data and distributions of step length and turning angles.

description: Two parameters for correlated random walk simulation: reported data and distributions of step length and turning angles.
DOI: 10.6084/m9.figshare.3518828.v1
title: Appendix A. Two parameters for correlated random walk simulation: reported data and distributions of step length and turning angles.

description: Two parameters for correlated random walk simulation: reported data and distributions of step length and turning angles.
DOI: 10.6084/m9.figshare.3518825
title: Appendix B. Dispersal kernels used for the parameter sweep.

description: Dispersal kernels used for the parameter sweep.
DOI: 10.6084/m9.figshare.3518825.v1
title: Appendix B. Dispersal kernels used for the parameter sweep.

description: Dispersal kernels used for the parameter sweep.
DOI: 10.6084/m9.figshare.3518822
title: Appendix C. Insect sampling count data in 15 CP and prairies.

description: Insect sampling count data in 15 CP and prairies.
DOI: 10.6084/m9.figshare.3518822.v1
title: Appendix C. Insect sampling count data in 15 CP and prairies.

description: Insect sampling count data in 15 CP and prairies.
DOI: 10.6084/m9.figshare.3518819
title: Appendix D. Linear regression model results of Anthocoridae-days (Anth) and exotic Coccinellidae-days (Ecocc) with area- and distance-weighted flux (Fluxad) and effective conductance (Conduct) at different threshold distances with different dispersal probability cutoffs.

description: Linear regression model results of Anthocoridae-days (Anth) and exotic Coccinellidae-days (Ecocc) with area- and distance-weighted flux (Fluxad) and effective conductance (Conduct) at different threshold distances with different dispersal probability cutoffs.
DOI: 10.6084/m9.figshare.3518819.v1
title: Appendix D. Linear regression model results of Anthocoridae-days (Anth) and exotic Coccinellidae-days (Ecocc) with area- and distance-weighted flux (Fluxad) and effective conductance (Conduct) at different threshold distances with different dispersal probability cutoffs.

description: Linear regression model results of Anthocoridae-days (Anth) and exotic Coccinellidae-days (Ecocc) with area- and distance-weighted flux (Fluxad) and effective conductance (Conduct) at different threshold distances with different dispersal probability cutoffs.
DOI: 10.6084/m9.figshare.3518816
title: Supplement 1. Detailed description of correlated random walk simulation and how to obtain an ellipse-shaped region covering successful pathway of a random walker, including R code.

description: File List CRWmodeling.r (MD5: c2c0605ab632cab4263910d96e2d76f2) Description This supplement is designed to assist the reader in understanding and implementing the correlated random walk simulation using R code. The supplement provides source code for simulating a successful random walker that departs from a source area and hits a target area. The R code uses some functions in the spatstat R package (Baddeley and Turner 2005) to record individual steps as line segments and some functions to calculate an ellipse-shaped region covering the successful pathway of a random walker. The results of this process are illustrated in the main manuscript in Fig. 2. CRWmodelling.r – To run the simulation, ‘spatstat’ R package must be installed.
DOI: 10.6084/m9.figshare.3518816.v1
title: Supplement 1. Detailed description of correlated random walk simulation and how to obtain an ellipse-shaped region covering successful pathway of a random walker, including R code.

description: File List CRWmodeling.r (MD5: c2c0605ab632cab4263910d96e2d76f2) Description This supplement is designed to assist the reader in understanding and implementing the correlated random walk simulation using R code. The supplement provides source code for simulating a successful random walker that departs from a source area and hits a target area. The R code uses some functions in the spatstat R package (Baddeley and Turner 2005) to record individual steps as line segments and some functions to calculate an ellipse-shaped region covering the successful pathway of a random walker. The results of this process are illustrated in the main manuscript in Fig. 2. CRWmodelling.r – To run the simulation, ‘spatstat’ R package must be installed.
DOI: 10.6084/m9.figshare.3518813
title: Appendix A. A table summarizing additional proposed control methods for Australian cane toads, a figure presenting the model schematic for the allometric population simulation, and text describing the approach used to estimate relative costs of control methods.

description: A table summarizing additional proposed control methods for Australian cane toads, a figure presenting the model schematic for the allometric population simulation, and text describing the approach used to estimate relative costs of control methods.
DOI: 10.6084/m9.figshare.3518813.v1
title: Appendix A. A table summarizing additional proposed control methods for Australian cane toads, a figure presenting the model schematic for the allometric population simulation, and text describing the approach used to estimate relative costs of control methods.

description: A table summarizing additional proposed control methods for Australian cane toads, a figure presenting the model schematic for the allometric population simulation, and text describing the approach used to estimate relative costs of control methods.
DOI: 10.6084/m9.figshare.3518810
title: Appendix A. Example of a random and a clustered landscape design for conventionally and organically managed fields.

description: Example of a random and a clustered landscape design for conventionally and organically managed fields.
DOI: 10.6084/m9.figshare.3518810.v1
title: Appendix A. Example of a random and a clustered landscape design for conventionally and organically managed fields.

description: Example of a random and a clustered landscape design for conventionally and organically managed fields.
DOI: 10.6084/m9.figshare.3518807
title: Appendix A. Methodological details of AMF staining, cucurbitacin analysis, and floral volatile analysis, with volatile results.

description: Methodological details of AMF staining, cucurbitacin analysis, and floral volatile analysis, with volatile results.
DOI: 10.6084/m9.figshare.3518807.v1
title: Appendix A. Methodological details of AMF staining, cucurbitacin analysis, and floral volatile analysis, with volatile results.

description: Methodological details of AMF staining, cucurbitacin analysis, and floral volatile analysis, with volatile results.
DOI: 10.6084/m9.figshare.3518804
title: Appendix B. Soil characteristics from sampled conventional and organic fields.

description: Soil characteristics from sampled conventional and organic fields.
DOI: 10.6084/m9.figshare.3518804.v1
title: Appendix B. Soil characteristics from sampled conventional and organic fields.

description: Soil characteristics from sampled conventional and organic fields.
DOI: 10.6084/m9.figshare.3518798
title: Appendix C. Results for statistical analyses of AMF treatments on plant biomass and AMF colonization on plant traits.

description: Results for statistical analyses of AMF treatments on plant biomass and AMF colonization on plant traits.
DOI: 10.6084/m9.figshare.3518795
title: Appendix A. The effects of a type III predator functional response on the effectiveness of reserve networks.

description: The effects of a type III predator functional response on the effectiveness of reserve networks.
DOI: 10.6084/m9.figshare.3518795.v1
title: Appendix A. The effects of a type III predator functional response on the effectiveness of reserve networks.

description: The effects of a type III predator functional response on the effectiveness of reserve networks.
DOI: 10.6084/m9.figshare.3518792
title: Appendix B. The effects of harvesting on closed predator-prey communities with a type II functional response.

description: The effects of harvesting on closed predator-prey communities with a type II functional response.
DOI: 10.6084/m9.figshare.3518792.v1
title: Appendix B. The effects of harvesting on closed predator-prey communities with a type II functional response.

description: The effects of harvesting on closed predator-prey communities with a type II functional response.
DOI: 10.6084/m9.figshare.3518789
title: Appendix C. The effects of irregularly spaced reserve networks on metacommunities with a type II functional response.

description: The effects of irregularly spaced reserve networks on metacommunities with a type II functional response.
DOI: 10.6084/m9.figshare.3518789.v1
title: Appendix C. The effects of irregularly spaced reserve networks on metacommunities with a type II functional response.

description: The effects of irregularly spaced reserve networks on metacommunities with a type II functional response.
DOI: 10.6084/m9.figshare.3518783
title: Appendix D. The effects of reserve networks on the dynamics of nonequilibrium metacommunities with a type II functional response.

description: The effects of reserve networks on the dynamics of nonequilibrium metacommunities with a type II functional response.
DOI: 10.6084/m9.figshare.3518783.v1
title: Appendix D. The effects of reserve networks on the dynamics of nonequilibrium metacommunities with a type II functional response.

description: The effects of reserve networks on the dynamics of nonequilibrium metacommunities with a type II functional response.
DOI: 10.6084/m9.figshare.3518780
title: Appendix E. The effects of reserve networks on stochastically forced equilibrium metacommunities.

description: The effects of reserve networks on stochastically forced equilibrium metacommunities.
DOI: 10.6084/m9.figshare.3518780.v1
title: Appendix E. The effects of reserve networks on stochastically forced equilibrium metacommunities.

description: The effects of reserve networks on stochastically forced equilibrium metacommunities.
DOI: 10.6084/m9.figshare.3518777
title: Appendix A. Technical description of the Kalman filter and likelihood.

description: Technical description of the Kalman filter and likelihood.