cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1136081_d56
title: Ex2R18C1 DAPI-3 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d58
title: Ex2R18C1 vGluT2-2 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d54
title: Ex2R18C1 vGAT-3 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d51
title: Ex2R18C1 NR2B-4 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d46
title: Ex2R18C1 GluR2-6 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d55
title: Ex2R18C1 GABAARa1-7 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d48
title: Ex2R18C1 DAPI-4 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d49
title: Ex2R18C1 GluR1-5a from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d39
title: Ex2R18C1 GAD2-4 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d43
title: Ex2R18C1 PSD-2 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d44
title: Ex2R18C1 NR2A-2 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d34
title: Ex2R18C2 Synapsin1-3 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d38
title: Ex2R18C1 DAPI-2 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d33
title: Ex2R18C2 vGluT2-2 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d35
title: Ex2R18C1 DAPI-6 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.1136081_d36
title: Ex2R18C1 GluR4-7 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.15468/dl.ez3ywp
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypoatherina valenciennei (Bleeker, 1854)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 115 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032083-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.1917842_d7
title: Duplicate line data.xlsx

description: supporting file for associated Data Descriptor. Data Record 2, Duplicate Line Data
DOI: 10.6084/m9.figshare.c.1917842_d8
title: Raw Data.xlsx

description: associated dataset for Data Descriptor: Data Record 2, Raw Data.xlsx
DOI: 10.6084/m9.figshare.c.1917842_d6
title: Coefficients.xlsx

description: supporting document for associated Data Descriptor. Data record 2, Coefficients.xlsx
DOI: 10.6084/m9.figshare.c.3604028_d20
title: Additional file 12: File S1. of Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi

description: Databank of all classified CHS in fasta format. (TXT 980 kb)
DOI: 10.6084/m9.figshare.c.3604028_d15
title: Additional file 13: Table S6. of Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi

description: Eukaryotic species analyzed in this study. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3604028_d18
title: Additional file 1: Table S1. of Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi

description: Classification of fungal chitin synthase single mutants and comparison of their phenotype (1986–2016). In the first tab, phenotypes of mutants are summarized. In the second tab, phenotypes of mutants are detailed. In the third tab are the references of the single mutants publications. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3604028_d10
title: Additional file 3: Table S3. of Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi

description: Account of all chitin synthase encoding sequences in the genomes of species included in this study. (XLSX 81 kb)
DOI: 10.15468/dl.gdcz6m
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pithecia cazuzai Marsh, 2014"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032085-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3604028_d11
title: Additional file 18: File S3. of Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi

description: ML phylogeny used to place the root in Fig. 5. (TXT 6 kb)
DOI: 10.6084/m9.figshare.c.3604028_d9
title: Additional file 6: Table S4. of Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi

description: Account of species displaying recCHS, ESV or CV chitin synthases (tab 1) and account detail of recCHS, ESV and CV sequences in these species (tab 2). (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3604028_d4
title: Additional file 16: File S2. of Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi

description: ML phylogeny used to place the root in Fig. 4. (TXT 5 kb)
DOI: 10.5281/zenodo.14419326
title: LAWS ON GREEN ENERGY AND CLIMATE CHANGE
DOI: 10.5281/zenodo.14419327
title: LAWS ON GREEN ENERGY AND CLIMATE CHANGE
DOI: 10.6084/m9.figshare.c.3604028_d1
title: Additional file 14: Table S7. of Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi

description: Archeae, Bacteria and Virus genomes analyzed in this study. (XLSX 124 kb)
DOI: 10.6084/m9.figshare.c.3604028_d2
title: Additional file 2: Table S2. of Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi

description: Correspondence between the published chitin synthase classifications (1992–2016) (first tab) and their references (second tab). (XLSX 29 kb)
DOI: 10.6084/m9.figshare.754575.v4
title: The Comic Book  in the Age of Digital Reproduction
DOI: 10.6084/m9.figshare.c.3652415_d5
title: Additional file 5 of Screening lifespan-extending drugs in Caenorhabditis elegans via label propagation on drug-protein networks

description: The drug-disease bipartite network used in the paper, which includes 18,317 drug-protein interactions between 813 unique drugs and 3,660 unique proteins. (XLSX 440 kb)
DOI: 10.6084/m9.figshare.c.3652415_d4
title: Additional file 4 of Screening lifespan-extending drugs in Caenorhabditis elegans via label propagation on drug-protein networks

description: The aging-related genes of C. elegans extracted from GenAge database, together with the corresponding transcripts of each aging-related genes. (XLSX 99 kb)
DOI: 10.6084/m9.figshare.c.3652424_d3
title: Additional file 3: of LNDriver: identifying driver genes by integrating mutation and expression data based on gene-gene interaction network

description: The candidate drivers with p-values less than 0.05 in THCA. (XLS 19 kb)
DOI: 10.6084/m9.figshare.c.3652424_d2
title: Additional file 5: of LNDriver: identifying driver genes by integrating mutation and expression data based on gene-gene interaction network

description: The results of KEGG and GO enrichment analysis in KIRC. (XLS 122 kb)
DOI: 10.6084/m9.figshare.c.3652415_d3
title: Additional file 3 of Screening lifespan-extending drugs in Caenorhabditis elegans via label propagation on drug-protein networks

description: Detailed information of the drugs collected from bioassay screening result of the LOPAC 1280, as well as the manually curated anti-aging drugs from literature review. (XLSX 180 kb)
DOI: 10.6084/m9.figshare.c.3652433_d1
title: Additional file 1: of Integrative analysis of methylation and transcriptional profiles to predict aging and construct aging specific cross-tissue networks

description: Integrative age predictors and their weights. Note: type 1 indicates methylation data, and type 0 indicates expression data; tissue with 0 indicates the multi-tissue model, and 1-9 indicate each of 9 normal tissues (Bladder Urothelial tissue, Breast invasive tissue, Head/Neck squamous cell tissue, Kidney renal clear cell tissue, Kidney renal papillary cell tissue, Liver tissue, Lung tissue, Prostate tissue, Thyroid tissue), separately. (XLS 97 kb)
DOI: 10.15468/dl.ttvp9y
title: Occurrence Download

description: A dataset containing 38501 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "TaxonKey is Vigna unguiculata (L.) Walp."
 ]
}

 The dataset includes 38501 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032082-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3652424_d1
title: Additional file 6: of LNDriver: identifying driver genes by integrating mutation and expression data based on gene-gene interaction network

description: The results of KEGG and GO enrichment analysis in THCA. (XLS 158 kb)
DOI: 10.6084/m9.figshare.c.3652415_d2
title: Additional file 1 of Screening lifespan-extending drugs in Caenorhabditis elegans via label propagation on drug-protein networks

description: Detailed information of the predicted drugs, including the probabilities derived from two random walks independently started from effective and ineffective drugs, as well as the F-ratio. (XLSX 281 kb)
DOI: 10.6084/m9.figshare.c.3652406_d2
title: Additional file 1: of Minimally invasive (sinus tarsi) approach for calcaneal fractures

description: Additional movie file. (MEP 2Â kb)
DOI: 10.6084/m9.figshare.c.3652388_d1
title: Additional file 1: of CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data

description: S1- CMIP_code.zip: source codes of the CMIP software package. (ZIP 46 kb)
DOI: 10.6084/m9.figshare.c.3651743_d4
title: Additional file 13: of iCAGES: integrated CAncer GEnome Score for comprehensively prioritizing driver genes in personal cancer genomes

description: Output of iCAGES drug score on the case study from Wagle et al. (XLSX 77Â kb)
DOI: 10.6084/m9.figshare.c.3651743_d5
title: Additional file 5: of iCAGES: integrated CAncer GEnome Score for comprehensively prioritizing driver genes in personal cancer genomes

description: Summary of 11 point-coding variant deleteriousness prediction component scores used in the first layer of iCAGES. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3651743_d3
title: Additional file 4: of iCAGES: integrated CAncer GEnome Score for comprehensively prioritizing driver genes in personal cancer genomes

description: Table of TCGA samples with unknown response. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.c.3651743_d1
title: Additional file 9: of iCAGES: integrated CAncer GEnome Score for comprehensively prioritizing driver genes in personal cancer genomes

description: Summary of LR model for iCAGES gene score. (XLSX 38Â kb)
DOI: 10.6084/m9.figshare.c.3651743_d2
title: Additional file 6: of iCAGES: integrated CAncer GEnome Score for comprehensively prioritizing driver genes in personal cancer genomes

description: Pair-wise Pearson correlation between all predictors and outcome variables in the training dataset. (XLSX 49Â kb)
DOI: 10.15468/dl.3buf2c
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Atherina bleekeri Günther, 1861",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032086-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14418482
title: Metabolomics Data for Astragalus mongholicus and Salvia miltiorrhiza Decoction and Drug-Containing Serum via LC-MS/MS

description: This dataset comprises metabolomics data obtained from Astragalus mongholicus and Salvia miltiorrhiza decoction (HDC) and its drug-containing serum using liquid chromatography-mass spectrometry (LC-MS/MS). The data include:



C (Control serum): Blank serum without drug intervention.

M (Herbal decoction): HDC prepared with a 2:1 weight ratio of Astragalus mongholicus to Salvia miltiorrhiza and quantified for AS-IV and SAB contents.

T1 (Low-dose HDC serum): Serum from rats treated with low-dose HDC (0.469 g/mL).

T2 (High-dose HDC serum): Serum from rats treated with high-dose HDC (0.938 g/mL).


Files with "POS" indicate data collected in positive ion mode, while files without "POS" represent negative ion mode. The .wiff files contain raw quantification data of AS-IV and SAB, using Carbamazepine and Salidroside as internal standards. The .mzXML files are derived spectral data for downstream analysis.

LC-MS/MS analysis was conducted using an Orbitrap Exploris 120 mass spectrometer (Thermo Fisher Scientific) under specific parameters, ensuring high-resolution metabolite profiling. These data provide insights into the pharmacodynamic and pharmacokinetic profiles of HDC and its serum metabolites.
DOI: 10.5281/zenodo.14418483
title: Metabolomics Data for Astragalus mongholicus and Salvia miltiorrhiza Decoction and Drug-Containing Serum via LC-MS/MS

description: This dataset comprises metabolomics data obtained from Astragalus mongholicus and Salvia miltiorrhiza decoction (HDC) and its drug-containing serum using liquid chromatography-mass spectrometry (LC-MS/MS). The data include:



C (Control serum): Blank serum without drug intervention.

M (Herbal decoction): HDC prepared with a 2:1 weight ratio of Astragalus mongholicus to Salvia miltiorrhiza and quantified for AS-IV and SAB contents.

T1 (Low-dose HDC serum): Serum from rats treated with low-dose HDC (0.469 g/mL).

T2 (High-dose HDC serum): Serum from rats treated with high-dose HDC (0.938 g/mL).


Files with "POS" indicate data collected in positive ion mode, while files without "POS" represent negative ion mode. The .wiff files contain raw quantification data of AS-IV and SAB, using Carbamazepine and Salidroside as internal standards. The .mzXML files are derived spectral data for downstream analysis.

LC-MS/MS analysis was conducted using an Orbitrap Exploris 120 mass spectrometer (Thermo Fisher Scientific) under specific parameters, ensuring high-resolution metabolite profiling. These data provide insights into the pharmacodynamic and pharmacokinetic profiles of HDC and its serum metabolites.
DOI: 10.6084/m9.figshare.c.3646553_d3
title: Additional file 7: File S1. of RNA sequencing to characterize transcriptional changes of sexual maturation and mating in the female oriental fruit fly Bactrocera dorsalis

description: Genes differentially expressed between mature virgin females and immature individuals, and between mated females and mature virgins. Reads, RPKM and the fold values for each comparison group (mature virgin vs. immature, and mated vs. mature virgin) is shown. (XLS 674Â kb)
DOI: 10.6084/m9.figshare.c.3646277_d2
title: Additional file 1: of Effects of receptor for advanced glycation endproducts on microvessel formation in endometrial cancer

description: Clinical characteristics for endometrial cancer patients. (XLS 32 kb)
DOI: 10.6084/m9.figshare.c.3646265_d10
title: Additional file 11: of Evaluation of methods for differential expression analysis on multi-group RNA-seq count data

description: Average AUC values for simulation data with various options. Average AUC values of 100 trials are shown. The suggested (or default) options and the highest AUC values are in bold. Sheet 1: E-E (edgeR), Sheet 2: D-D (DESeq), Sheet 3: S-S (DESeq2). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3646265_d9
title: Additional file 4: of Evaluation of methods for differential expression analysis on multi-group RNA-seq count data

description: R code for obtaining simulation results without replicates (Table  3 ). After execution of this R-code with default parameter settings, the average AUC values of 100 trials under the following conditions shown in Table 3 can be obtained: PDEG = 25 %, (0.5, 0.4, 0.1) for (PG1, PG2, PG3), and Nrep = 1. (R 8 kb)
DOI: 10.6084/m9.figshare.c.3646265_d7
title: Additional file 8: of Evaluation of methods for differential expression analysis on multi-group RNA-seq count data

description: Comparison of DEGs obtained from individual pipelines for the Blekhman’s count data. Sheet 1: Numbers of DEGs satisfying the 5 % FDR threshold and the overlaps between all pairs of pipelines are shown. The presentation method is the same as in table 1 in [28]: the numbers on the diagonal are highlighted in bold. Sheet 2: The corresponding Jaccard coefficients are shown. (XLSX 13 kb)