cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/r327zpf496.1
title: Data for: 1H NMR spectroscopy-based metabolic profiling of Ophiocordyceps sinensis and Cordyceps militaris of water-boiled and 50% ethanol-soaked extracts

description: Sample preparation for NMR Previously stored O. sinensis and C. militaris were divided into two groups and used for 1H NMR sample preparation. Prior to NMR analysis, O. sinensis and C. militaris were thawed to room temperature. For the 50% water:ethanol (H2O:EtOH) group, 5 mL of the 50% water:ethanol mixture was added to 500 mg O. sinensis or C. militaris and vortexed for 60 s. The mixtures were maintained for 360 days at 25oC. For the water (H2O) group, 5 mL of distilled water was added to 500 mg of O. sinensis or C. militaris. The mixtures were placed in boiling water and heated to 100oC for 30 mins. The extracts were centrifuged (15 min, 13,000 rpm) at 4oC and 3 mL of supernatant was collected. The supernatant was frozen at -80oC and then dried using a vacuum centrifugal evaporator (CHRiST, Alpha 2-4/LSC, Germany). The dried residues were separately dissolved in 3 mL of distilled water. A 600 µL extract was filtered (Millipore Amicon® ULTRA 3 kDa) and filtrates were collected. 3-(Trimethylsilyl) propanesulfonic acid (50 µL) pre-dissolved in D2O (an internal standard) was subsequently added to 450 µL of the filtrates. Finally, aliquots (480 µL) of each extract were transferred to a 5 mm NMR tube (Norell, Morganton, NC, USA) for NMR analysis. The 1H NMR spectra were recorded as detailed below. NMR analysis and data preprocessing All of the 1H NMR spectra were acquired at 298 K on a Bruker AV III 600 MHz NMR spectrometer (Bruker Analytische GmbH, Rheinstetten, Germany) equipped with an inverse cryoprobe operating at a proton NMR frequency of 600.13 MHz. For each sample, other used acquisition parameters were as follows: number of scans = 32, spectral width (SW) = 8,000 Hz, pulse width (PW) = 10 s, and relaxation delay = 1.0 s. A Noesygppr1d pulse sequence was applied to suppress the residual water signal. All of the free induction decay NMR spectra were phased and baseline-correction was performed using Chenomx NMR Suite v.7.7 (Chenomx Inc., Edmonton, Canada). The metabolites were identified by matching spectral signals to the Chenomx 600 MHz Library comprising 330 metabolites. A reference compound DSS-d6 was used as an internal standard for the chemical shifts (set to 0 ppm) and a reference signal for the quantification. Data quantification was performed by comparing the integration of a known reference signal (DSS-d6) with the signals derived from a library of compounds containing chemical shifts and peak multiplicities for all of the resonances of the constituents. The results were exported as an Excel file for further analysis.
DOI: 10.5061/dryad.1kt2n9v/1
title: Sexual selection and evolution of CHCs_Data
DOI: 10.5061/dryad.40br385/2
title: Dormice_metabolicrate_data_fo_respository

description: Data on metabolic costs of hibernation at 3°C or 14°C in two species of dormice.
DOI: 10.5061/dryad.40br385/3
title: Dormice_data_fo_respository

description: Data from experiment testing the influence that deep torpor has on telomere attrition in two species of dormice, hibernating at 3°C or 14°C.
DOI: 10.5061/dryad.63v6b83/1
title: Supplementary information_Hoa et al_Endocrinology

description: Supplementary information. 6 sup figures
DOI: 10.5061/dryad.63v6b83/2
title: Video 1

description: Video 1. Head-fixed in vivo imaging of pituitary blood flow (see Figure 1F, right panel). 100 frames/sec.
DOI: 10.5061/dryad.63v6b83/3
title: Video 2

description: Video 2. Head-fixed in vivo imaging of pituitary cells expressing GCAMP6s (see Figure 4G). 10 frames/sec.
DOI: 10.5061/dryad.63v6b83/4
title: Video 3
DOI: 10.5061/dryad.6fh81vd/4
title: Figure_Supplemental_1

description: Measuring the effect of phylogenetic signal on splitter values.} (A) Boxplot of the splitter values for 100 randomized datasets (white) obtained for each of the ten datasets with two monophyletic clusters. Splitter values for the initial BM datasets with two clusters are shown in purple. Boxplot of 100 datasets simulated under a simple BM process with no clusters on a single tree (coral) is shown for comparison. (B) Boxplot of Blomberg’s $K$ for each randomized dataset (white); values for the initial BM datasets with two clusters are shown in purple. Boxplot of 100 datasets simulated under a simple BM process with no clusters on a single tree (coral) is shown for comparison.
DOI: 10.5061/dryad.6fh81vd/5
title: Figure_Supplemental_2

description: Measuring the effect of erroneous trait data on spectral density profile summary statistics.} Spectral density profile summary statistics for data simulated under a BM process (coral) with introduced error for $10\%$ of tips with a sampling variance equal to one, two, and three times the standard error of the simulated BM data; and with a sampling variance equal to one times the standard error for $10, 20, 30, 100\%$ of tips. Spectral density profile summary statistics for data simulated on the same tree under an ACDC process ($\beta=1.5$) is also shown (cornflowerblue).
DOI: 10.5061/dryad.6fh81vd/6
title: Figure_Supplemental_3

description: Clustering phylogenetic trait data using the spectral density profile of the nMGL on a non-ultrametric tree.} Hierarchical clustering of spectral density profiles and three-dimensional plotting of spectral density profile summary statistics for phylogenetic trait data simulated under AC (cornflower blue), BM (coral), and DC (sea green) models of trait evolution on a single (A) constant-rate, (C) increasing-rate, and (D) decreasing-rate birth-death tree without pruning extinct lineages. Tree is shown in inset. Asterisks denote bootstrap probabilities $&gt;0.95$ at the split. (B) Silhouette widths for profiles comprising each trait model cluster simulated on the ultrametric or non-ultrametric tree (see Fig. 5A).
DOI: 10.5061/dryad.6fh81vd/7
title: Figure_Supplemental_4

description: Effect of tree size on the nMGL. (A) Scatterplots and OLS regression slopes for spectral density profile summary statistics for trait data simulated under DC (sea green), BM (coral), and AC (cornflower blue) models on constant-rate birth-death trees with different numbers of tips. (B) Phylogenetic trait space for trait models simulated under AC, BM, and DC models on trees with different numbers of tips.
DOI: 10.5061/dryad.870n1qj/2
title: Opatova_et_at_2019_supplementary_material

description: Tables Table S1: Specimen locality data Table S2: Specimens used in the combined analyses of genomic and transcriptomic data (DNAAA_matrix). Table S3: Character coding for web type ancestral state reconstruction Figures Supplemental Figure 1. Tree topology obtained in maximum likelihood (ML) analyses conducted in RAxML. Supplemental Figure 2. Tree topology obtained in Bayesian inference (BI) analyses conducted in ExaBayes. Supplemental Figure 3. Tree topology obtained in maximum likelihood (ML) analyses conducted in IQ-TREE. Supplemental Figure 4. Phylogenetic tree inferred after removal of Paratropididae terminals (“No_Paratropis” dataset). Supplemental Figure 5. Tree topology obtained in species tree analysis conducted in ASTRAL. Supplemental Figure 6. Comparison of resulting tree topologies obtained by concatenated analyses conducted in RAxML and ExaBayes and species tree approach conducted in ASTRAL. Supplemental Figure 7. Divergence time estimates of mygalomorph spiders inferred by treePL with placement of the calibrations. Supplemental Figure 8. Divergence time estimates of mygalomorph spiders inferred by treePL with the confidence intervals. Supplemental Figure 9. Phylogenetic tree of Mygalomorphae with current classification scheme (World Spider Catalog 2019). Data Matrices and Input Files RASP_ingroup.tre_dis.csv RAxML_DNAAA.nex RAxML_DNAAA_partitions.txt RAxML_ExaBayes_all_taxa.nex RAxML_ExaBayes_all_taxa_partitions.txt RAxML_No_Paratropis.nex RAxML_No_Paratropis_partitions.txt Tree Files ASTRAL_all_taxa.tre ASTRAL_all_taxa.trees ExaBayes_all_taxa.tre RAxML_DNAAA.tre RAxML_No_Paratropis.tre RAxML_all_taxa.tre treePL_boot_dated.tre Sequence Files Sequences per locus: L1 - L556 (472 loci), sequences before MAFFT alignment and ALISCORE/ALICUT treatment
DOI: 10.5061/dryad.c2q52rs/2
title: Dryad Dataset_PLOS ONE_Great Slave Lake Fish Metal(loid)s

description: This file contains measurements of metal(loid) concentrations and ancillary data for fishes of Great Slave Lake, Northwest Territories, Canada. The worksheets contains: (1) Locations of fishes captured during the study; (2) Size, age, metal(loid) concentrations, and carbon and nitrogen stable isotopes of fishes captured for the study; (3) Size, age, and metal(loid) concentrations of fishes reported in 2 grey literature technical reports on the study area; (4) Size and metal(loid) concentrations of fishes examined in a previous publication (Cott et al. 2016.Journal of Great Lakes Research 42(2):223-32).
DOI: 10.5061/dryad.r3t28r6/1
title: Protein sequences of translated gene-prediction sequences of five Trichoptera species

description: This protein sequence file (FASTA format) contains in-silico translated gene prediction sequences of the following four Trichoptera species (DOIs leading to the original publication in which these data were generated are given in parentheses after the species name): Stenopsyche tienmushanensis (10.1093/gigascience/giy143), Glossosoma conformis (10.1016/j.scitotenv.2018.03.109), Sericostoma personatum (10.1111/mec.14292) and Limnephilus lunatus (10.1093/nar/gku983). Additionally the FASTA file contains in-silico predicted protein sequences of the transcriptome of Micropterna lateralis (10.1080/01650424.2016.1200727). For the bioinformatics pipeline on how these protein sequences were generated from the original data see Material & Methods in our publication. Additionally, the FASTA files contains heat shock protein sequences downloaded from NCBI (taxonomic scope Insecta, see publication). This file was used as a homology in-silico digested search space in MaxQuant to identify proteins in samples of Crunoecia irrorata reared at three different temperatures via LC-MS/MS.
DOI: 10.5061/dryad.r3t28r6/2
title: Bioinformatic commands used to construct the protein database

description: This file specifies the commands and parameters (utilizing e.g. TransDecoder, QIIME, blast, Unix commands) used to construct the amino-acid database used in MaxQuant as in-silico digested homology search space for protein identification and can be applied to the self-generated or publicly available genome and transcriptome sequences.
DOI: 10.5061/dryad.ss25rp7/1
title: Distribution of cytoplasmic haplotypes among populations of Lobelia siphilitica varying in sex ratio

description: Distribution of plastid and 3-locus mitochondrial haplotypes among 220 individuals of Lobelia siphilitica. Individual samples are identified by their population of origin, population location (US state or Canadian province), and the sex of the plant (female, F or hermaphrodite, H). Average population sex ratio (percent female averaged across years) and sex-ratio quartile (0%, 0.1-10%, 10.1-50%, &gt;50% female) are also shown. Plastid haplotypes are based on intergenic sequences of psbK–rps16, excluding an imperfect minisatellite locus (13 unique haplogroups labeled 'C#'). Concatenated 3-locus mitochondrial haplotypes are based on sequenced alleles of nad7ab (A–K), atp6 (1–11) and Ψrps12 (a–f). '_' indicates missing sequences for a particular mitochondrial allele. Mitotype classes: C= common mitotypes found in at least 5 individuals and at least 3 populations; RA= rare mitotypes with rare alleles for at least one marker locus; RR= rare combinations of common alleles at each marker locus.
DOI: 10.17632/5r5ywfcx7f.1
title: Data for: Consistent slow exhumation in a late Cenozoic glaciated landscape: The Presidential and Carter ranges of the White Mountains in New Hampshire, USA

description: Cosmogenic 10-Be, apatite U-Th/He data, QtQt modeling inputs, and apatite 4He/3he data supporting the submitted paper.
DOI: 10.17632/7kdw5zrzzh.1
title: Data for: Influence of Clay Size on Corrosion Protection by Clay Nanocomposite Thin Films

description: description of electrochemical impedance analytical procedure
DOI: 10.17632/7kdw5zrzzh.2
title: Data for: Influence of Clay Size on Corrosion Protection by Clay Nanocomposite Thin Films

description: description of electrochemical impedance analytical procedure
DOI: 10.17632/b93nzyh5vb.1
title: Data for: Mussel periostracum as a high-resolution archive of soft tissue δ13C records in coastal ecosystems

description: This file corresponds to the data used in Figures 3-6.
DOI: 10.17632/pw7d8v8mmb.1
title: Data for: Zileuton use and phenotypic features in Asthma

description: Data on asthma phenotypes and pulmonary function tests across a population on Zileuton for asthma
DOI: 10.17632/pw7d8v8mmb.2
title: Data for: Zileuton use and phenotypic features in Asthma

description: Data on asthma phenotypes and pulmonary function tests across a population on Zileuton for asthma
DOI: 10.17632/ywpyrdhf2b.1
title: Data for: Middle Eocene large coccolithaceans: biostratigraphic implications and paleoclimatic clues

description: Morphometric measurements
DOI: 10.5061/dryad.314k5k5/1
title: SNP ARRAY NEXUS BIODISCOVERY DATA

description: Data output from SNP Array analyses in Nexus Copy Number v7.5 (BioDiscovery, Inc.). Data per sample includes: Calls.txt; call thresholds.txt; descriptor set; probes.ivg; raw_snps.text; raw.txt; segments.ivg; setting.xmle; snps.ivg; snpsegments.ivg; zygoisty.txt; zygositythreshold.txt;
DOI: 10.5061/dryad.314k5k5/10
title: WS51615_12007523_Agi_Ex_3.sorted.nodup.bam
DOI: 10.5061/dryad.314k5k5/2
title: PROBE DATA - ALL SAMPLES

description: Data output from SNP Array analyses in Nexus Copy Number v7.5 (BioDiscovery, Inc.). Probe data per chromosome for all samples
DOI: 10.5061/dryad.314k5k5/3
title: COPY NUMBER ANALYSES - SAMPLE SUMMARY AND TYPE

description: Sample details for copy number analyses
DOI: 10.5061/dryad.314k5k5/7
title: Illumina HumanHap550 genotyping data

description: SNP genotyping data in binary file format
DOI: 10.5061/dryad.314k5k5/8
title: Haloplex fastq files

description: Fastq files containing the Haloplex reads.
DOI: 10.5061/dryad.314k5k5/9
title: WS51615_12007521_Agi_Ex_2.sorted.nodup.bam
DOI: 10.5061/dryad.sm6jb0p/1
title: Data_S1_Aligned_AHA genomic_data_for tree_order

description: Anchored hybrid enrichment genomic-scale data for squamata
DOI: 10.5061/dryad.sm6jb0p/2
title: Data_S2_Concatenated_Squam_Concatenated

description: Concatenated loci
DOI: 10.5061/dryad.sm6jb0p/3
title: Data_S3_Concatenated_partitioned_models

description: Partitions and models for the concatenated data
DOI: 10.5061/dryad.sm6jb0p/4
title: Data_S4_Tree_1_Squamate_ASTRAL_IQ_BS_Tree

description: ASTRAL III phylogeny using IQTree gene trees with bootstrap support
DOI: 10.5061/dryad.sm6jb0p/5
title: Data_S5_Tree_2_SQ_IQ_ASTRAL_Full_Annotations

description: ASTRAL III Phylogeny using IQ gene trees with full ASTRAL annotations on quadripartitions
DOI: 10.5061/dryad.sm6jb0p/6
title: Data_S6_Tree_3_Squamata_IQ_ASTRAL_ASTRAL_Support

description: ASTRAL III phylogeny with ASTRAL quadripartion support
DOI: 10.5061/dryad.sm6jb0p/7
title: Data_S7_Tree_4_Squam_IQ_Concat_Part_BS_SH

description: Concatenated and partitioned IQTree with bootstrap and SH support (BS/SH)
DOI: 10.5061/dryad.sm6jb0p/8
title: Data_S8_Dated_ASTRAL_IQ_Point_Tree

description: Dated phylogeny where concatenated sequence data were fit to the topology of ASTRAL III tree and dates were estimated using TreePL
DOI: 10.5061/dryad.sm6jb0p/9
title: Data_S9_Dated_IQ_UF_Bootstraps_with_error

description: Dated phylogeny with error using 1000 IQ trees and UFBoots (Fast bootstrap) function and estimated with TreePL
DOI: 10.17632/cckc4bpvn2.1
title: Data for: Positional Momentum and Liquidity Management; A Bivariate Rank Approach

description: This is the cleaned data, which lots of computation have been done for it. This data has been used to format the portfolios.
DOI: 10.17632/dr4kzyg6n8.1
title: Data for: Applying microbial indicators of hydrocarbon toxicity to contaminated sites undergoing bioremediation on subantarctic Macquarie Island.

description: Applied microbial data and associated meta-data for hydrocarbon contaminated soils from Macquarie Island. Samples were collected over a 5 year period from three contaminated sites, FF, MPH East and MPH South. The samples were analysed with ARISA community fingerprinting, MFQPCR, and 454 amplicon sequencing. The data represents the processed data from these platforms and associated environmental data.
DOI: 10.17632/f7zrbgj992.2
title: Data for: Change in the pattern of posttransplantation anemia in kidney receptors. Gender role in recipients and type of donor

description: Introduction: Posttransplant anemia (PTA) in kidney organ receptors is a complication that has repercussions mainly of cardiovascular consequence. The objective of this study is to determine the prevalence of anemia, as well as the relationship between gender in the kidney recipient and the kidney donor, in the presence or absence of anemia at 12 months’ post kidney transplant (KT). Material and methods: Observational, longitudinal study of KT made over a 5-year period, from 2013 to 2017 in renal transplant unit from "La Raza" National Healthcare Medical Center. Three hundred twenty-eight records were analyzed. Hemoglobin (Hb) and the presence or absence of anemia according to the definition of the World Health Organization were analyzed; the association was determined between the gender of the kidney recipient and donor type (Living or deceased). For the analysis central tendency and dispersion were made, the mean difference was established with chi squared test or student’s t-test. For bivariate risk analysis was performed with significant p&lt;0.05. Results: The mean Hb before KT was 10.38 g / dL (SD ± 2.16); Hb at 12 months was 14.47 g / dL (SD ± 2.37) 4.09 absolute increase g / dL. Kidney organ male recipients a mean of 10.54 g Hb / dL (SD ± 2.17) at 12 months 15.33 g / dL (SD ± 2.25), Δ 4.79 g / dL; female recipients Hb 10.16 g / dL (SD ± 2.13) to 13.31 g / dL (2.01 ± DE), 3.15 g of Δ g/ dL Hb, the difference between genders was 1.64 g / dL at the end of 12 months. Patients with serum creatinine (Cr) &lt;1.2 mg / dl and anemia were 16/152 (10.5%); patients with Cr≥1.2 mg / dL and anemia were 36/176 (20.5%), p 0.014. In the bivariate logistic regression with an OR of 2.047 (95% CI 1027-4078, p=0.042) for higher Cr levels and the presence of persistent anemia. Conclusions: There is a prevalence of anemia in female kidney organ recipients and kidney organ recipients from deceased donors. There is a higher risk of persistent anemia in the case of patients with some degree of graft failure at 12 months. Keywords: posttransplantation anemia, hemoglobin pattern post-transplant, gender, anemia pattern between type of donor in kidney transplantation
DOI: 10.17632/fx5txrw5zm.1
title: Data for: Serviceability Limits of Reinforced Concrete Hinges

description: This document contains figures illustrating the sensitivity of serviceability limit states of reinforced concrete hinges.
DOI: 10.17632/hntgbjm7b8.1
title: Data for: A method of estimating the future meteorological data.

description: the data used is on world meteorological organization site and could be accessed by everyone.
DOI: 10.17632/psrd74x4v9.1
title: Data for: The interpretability of stable hydrogen isotopes in modern herbivore tooth enamel

description: Stable hydrogen, oxygen, and carbon isotope compositions of varying modern mammalian herbivores.
DOI: 10.17632/wsjwbnzw9y.1
title: Supplementary Material for "Double magnonic chains of particles: spin waves slowing and snaking"

description: This is a Supplementary Material for "Double magnonic chains of particles: spin waves slowing and snaking"
DOI: 10.5061/dryad.314k5k5/11
title: WS51615_12007524_Agi_Ex_4.sorted.nodup.bam
DOI: 10.5061/dryad.314k5k5/12
title: WS51615_12007525_Agi_Ex_5.sorted.nodup.bam
DOI: 10.5061/dryad.314k5k5/13
title: WS51615_12007526_Agi_Ex_6.sorted.nodup.bam
DOI: 10.5061/dryad.314k5k5/14
title: WS51615_12007527_Agi_Ex_7.sorted.nodup.bam
DOI: 10.5061/dryad.314k5k5/15
title: WS51615_12007528_Agi_Ex_8.sorted.nodup.bam
DOI: 10.5061/dryad.314k5k5/16
title: WS51615_12007529_Agi_Ex_9.sorted.nodup.bam
DOI: 10.5061/dryad.314k5k5/17
title: WS51615_12007530_Agi_Ex_10.sorted.nodup.bam
DOI: 10.5061/dryad.314k5k5/18
title: SEQUENCING VARIANTS

description: SEQUENCING VARIANTS IDENTIFIED FROM EXOME AND TARGETED HALOPLEX CAPTURES. RAW DATA AND SAMPLES FILTERED TO REMOVE VARIANTS WITH ExAC POPULATION ALTERNATE ALLELE FREQUENCY OF &lt;0.5.
DOI: 10.5061/dryad.sm6jb0p/10
title: Data_S10_Dated_Combined_Slow_bootstraps_RAXML_with_error

description: Dated phylogeny with error using 100 RAxML bootstraps and phylogenies estimates using IQTree and estimated with TreePL (slow bootstraps)
DOI: 10.5061/dryad.sm6jb0p/11
title: Data_S11_Tree_PL_control

description: Control file for running TreePL
DOI: 10.5061/dryad.sm6jb0p/12
title: Data_S12_All_Code_Squamate_Monophyly-Multicolinearity_STATS

description: Code for running Neural Network for gene interrogation and other functions
DOI: 10.5061/dryad.sm6jb0p/13
title: Data_S13_gene_support_species_tree_by_date

description: Dated nodes from the species tree showing the number of genes that support or do not support that node
DOI: 10.5061/dryad.sm6jb0p/14
title: Data_S14_Support_by_node_table

description: Nodes from species tree showing if each locus supports (1) or does not support (0) that node
DOI: 10.5061/dryad.sm6jb0p/21
title: Data_S15. NN_Table_All_Stats

description: Table of all stats for each locus for testing predictions of RFgt-st differences using NN code for regression predictions.
DOI: 10.17632/2r8vpzb42h.4
title: Data for: Changes in Concentrations of Fine and Coarse Particles Under the CO2-Induced Global Warming

description: monthly data in the experiment of 2xCO2, and 4xCO2.
DOI: 10.17632/htsnn9py5c.1
title: Data for: DEFINING THE ALLOMETRY OF STEM AND CROWN DIAMETER OF URBAN TREES

description: Allometry data for urban trees in Norwich and Peterborough, UK
DOI: 10.17632/mz6vvzxdt5.1
title: Data from: Egg size and density estimates for three gadoids in Icelandic waters and their implications for the vertical distribution of eggs along a stratified water column

description: Raw egg density and diameter measurements taken from wild spawning cod, haddock and saithe in SW Icelandic waters. Density measurements were taken using density-gradient columns and diameter measurements were taken from high resolution photographs. Column descriptions: 'species' = factor for species 'site' = factor used to differentiate between cod caught inshore ("codIn") and offshore ("codOut") 'batch' = code referring to each individual female sampled 'femaleLength' = total length (cm) of individual females 'dpf' = The number of days-post-fertilisation at which measurements were taken 'stage' = the dominant ontogenetic stage (pooled over batches) using a modified classification scheme developed from Thompson and Riley (1981) 'density' = raw egg density measurements (in g cm-3) at 7°C 'se' = the equivalent salinity of neutral buoyancy (PSU) at 7°C. 'diameter' = raw egg diameter measurements (mm) Two supplementary datasets are included, "batchDetails" and "sampleLocations" which contain the dates and locations for the sampling.
DOI: 10.17632/rybk3frwdn.1
title: Data for: 3600817

description: These data are used for the regression estimation
DOI: 10.17632/szpgstw7vk.1
title: Do voters reward politicians for education expenditures?

description: Replication data for article "Do voters reward politicians for education expenditures?" by Matheus Assunção and Fernanda Estevan
DOI: 10.5061/dryad.cn5kh5m/1
title: Script for reproducing hypoxia models

description: Script here is an example script for reproducing the hypoxia models. Parameters listed in the script are for the occasional hypoxia (&lt;4.6 mg L -1) model. Hypoxia data which R script suggests, is a modified version due to national restrictions