cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23528910.v4
title: Supporting Information for "<b>L</b><b>ow</b><b> δ</b><sup><strong>18</strong></sup><b>O</b><b> and </b><b>δ</b><sup><strong>30</strong></sup><b>Si</b><b> TTG</b><b> at ca. 2.3 Ga</b><b> hints at an intraplate rifting onset of the Paleoproter</b><b>o</b><b>zoic </b><b>supercontinent cycle</b><b>" submitted to </b><i>JGR-Solid Earth.</i>

description: Supporting Information including methodological information (a PDF file of AGU_SuppInfo), Supplementary Figures S1-S5 (JPG files), and Supplementary Tables S1-S11 (Excel files)The Supporting material includes three parts:A PDF file as the table of contents, including detailed methods and references, Supplementary Figures S1-S5 with figure captions and references, and captions for Supplementary Tables S1 to S11.Supplementary Figures S1-S5 are uploaded separately.All analytical data are provided in Supplementary Tables S1 to S11 separately as excel files, with corresponding captions and references.
DOI: 10.6084/m9.figshare.24441784.v1
title: Data for Soil Water Vapor Transport Based on Experiment

description: This dataset is the supporting data for the manuscript "<b>Biocrusts Critical Regulation of Soil Water Vapor Transport (Diffusion, Sorption, and Late-stage Evaporation) in Drylands</b>".
DOI: 10.6084/m9.figshare.27894594.v8
title: <b>Proteome-wide identification and comparison of drug pockets for discovering new drug indications and side effects</b>

description: Drug development faces significant financial and time challenges, highlighting the need for more efficient strategies. This study evaluated the druggability of the entire human proteome using Fpocket. We identified 15,043 druggable pockets in 20,255 predicted protein structures, significantly expanding the estimated druggable proteome from 3,000 to over 11,000 proteins. Notably, many druggable pockets were found in less-studied proteins, suggesting untapped therapeutic opportunities. Pairwise pocket similarity analysis identified 220,312 similar pocket pairs, with 3,241 pairs across different protein families, indicating shared drug-binding potential. In addition, 62,077 significant matches were found between druggable pockets and 1,872 known drug pockets, highlighting candidates for drug repositioning. We repositioned progesterone to ADGRD1 for pemphigus and breast cancer, and estradiol to ANO2 for shingles and medulloblastoma, which were validated by molecular docking. To assess safety, off-target effects were analyzed for the drugs such as axitinib, linking newly identified targets with known side effects. For axitinib, 127 new targets were identified and 46 out of 48 documented side effects were linked to these targets. These findings demonstrate the utility of pocket similarity in drug repositioning, target expansion, and improved drug safety evaluation, offering new avenues for the discovery of new indications and side effects of existing drugs.
DOI: 10.15468/dl.exffne
title: Occurrence Download

description: A dataset containing 4239 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Pilosella piloselloides (Vill.) Soják",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 4239 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013160-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/44m2hvfzft
title: An Automatic Scientific Data Collection Framework for Materials Science

description: Software developed in the paper and sample data used for testing.
DOI: 10.17632/97y842jr5m
title: Dataset for the heat-up and heat transfer towards single particles and synthetic particle clusters from particle resolved CFD simulations

description: The data presented here represents the CFD simulated heat transfer and drag behavior of synthetic particle clusters consisting of 44 spheres. Particle resolved computational fluid dynamic simulations were carried out to investigate the heat fluxes, the forces acting upon the particle cluster, and the heat-up times of particle clusters with multiple void fractions (0.477 - 0.999) and varying relative velocities (0.5 - 25 m/s).
Integral heat fluxes and exact particle positions for each particle in the cluster, and integral heat fluxes and the total acting force, derived from steady-state simulations, are reported for 85 different cases. Heat-up times of individual particles and the particle clusters are provided for six cases (three cluster void fractions and two relative velocities each). Furthermore, the heat-up times of single particles with different commonly used representative particle diameters are presented. Depending on the case, the particle Reynolds number, the cluster void fraction, the Nusselt number, and the cluster drag coefficient are included in the secondary data.
The data is presented here to support the related main research paper, where the data was collected, and the data descriptor paper, in which the data is described in detail.
DOI: 10.17632/d26tcwdx97
title: PAHs and 210Po/210Pb in the Arctic, 2012

description: PAH and 210Po/210Pb data as well as estimation results (export flux & residence time)
DOI: 10.17632/jhm6539mcm
title: Supplemental Material for JAAD Research Letter: "Risk factors for and prognostic impact of positive surgical margins after excision of Merkel cell carcinoma"

description: Supplemental Material for JAAD Research Letter: "Risk factors for and prognostic impact of positive surgical margins after excision of Merkel cell carcinoma"
DOI: 10.6084/m9.figshare.14200142.v1
title: CM1 Input Soundings

description: CM1 Input Soundings
DOI: 10.6084/m9.figshare.19139591.v1
title: Bolder et al Grad-CAM example.zip from Seasonal variations of serotonin in the visual system of an ant revealed by immunofluorescence and a machine learning approach

description: Zip file containing the machine learning code (R), the Grad-Cam code (python), and a file structure with an example set of images to allow for test runs of the Grad-Cam experiment
DOI: 10.6084/m9.figshare.4883708.v1
title: adjnoun.gml

description: These data are public, which can be downloaded from the Mark Newman's home page and Pajek website.<br><br>
DOI: 10.6084/m9.figshare.13507440.v1
title: Dynamics of reduced genetic diversity in increasingly fragmented populations of Florida Scrub-Jays, Aphelocoma coerulescens

description: Data for "Dynamics of reduced genetic diversity in increasingly fragmented populations of Florida Scrub-Jays, Aphelocoma coerulescens" by TN Nguyen, N Chen, EJ Cosgrove, R Bowman, JW Fitzpatrick, AG Clark, 2022.<br> <br> Details in README.txt. Please contact the authors if you plan on using these data.
DOI: 10.6084/m9.figshare.9792764.v1
title: Morphology data

description: single cell morphology data of LN229 and U251 cells treated under different levels of compressive solid stress.
DOI: 10.15468/dl.6pv6zx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sagamichthys schnakenbecki (Krefft, 1953)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((40.2542 -7.2836,40.3029 -7.1504,35.9648 -7.1504,35.9648 -16.1504,40.6365 -16.1504,41.3042 -15.0287,41.3321 -14.414,41.0824 -13.7539,41.0579 -13.1811,41.2109 -10.9003,40.7985 -9.9904,40.2764 -9.7003,39.994 -8.7002,40.4062 -7.7189,40.2542 -7.2836))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013159-250525065834625/datasets/export for details.
DOI: 10.17632/dns97tfdjn
title: Dataset to track concrete cracking using DIC with fixed and moving camera

description: Today, Digital Image Correlation (DIC) has become a standardized method to track displacements and crack-propagation of civil engineering structures in a laboratory environment. The benefit of using DIC over other standard methods is that it is contact-free and only requires a standard DSLR camera. Moreover, the displacement can be tracked over the entire image, which is a great advantage compared to the limitations of standard sensors that only measure the deformation at a specific point. In standard DIC, the displacements are directly extracted from the images. Hence, the position of the camera must be fixed during the entire test. Therefore, DIC is commonly used in a laboratory environment to measure displacement during short-term testing, e.g. testing of the structural capacity of a reinforced concrete beam. The data presented in this paper was used to verify a newly developed and innovative photogrammetric algorithm, Deformation from Motion (DfM). This algorithm overcomes the standard limitation of traditional DIC and enables high-accuracy measurements to be performed using a camera with no fixed position. As a reference, the crack propagation was on one side monitored with a LVDT and on the other side with a camera with a fixed position. During testing, a moving camera also captured imagery on both sides.
DOI: 10.17632/kxddgdtxnw
title: INDUCT

description: Full dataset of study:
The limits of inductive reasoning for clinical evidence appraisal – a simulation study 
Steffen Mickenautsch, Veerasamy Yengopal
DOI: 10.6084/m9.figshare.28664528.v5
title: Phenotype Associations with Feeders/Eucalyptus

description: mcmcGLMM models for phenotypic associations with feeder or Eucalyptus abundance. Included are the raw data as well as the stepwise regression models for model testing.
DOI: 10.17632/34m2p6v79t
title: PERTURBO: A software package for ab initio electron–phonon interactions, charge transport and ultrafast dynamics

description: Perturbo is a software package for first-principles calculations of charge transport and ultrafast carrier dynamics in materials. The current version focuses on electron–phonon interactions and can compute phonon-limited transport properties such as the conductivity, carrier mobility and Seebeck coefficient. It can also simulate the ultrafast nonequilibrium electron dynamics in the presence of electron–phonon scattering. Perturbo uses results from density functional theory and density functional perturbation theory calculations as input, and employs Wannier interpolation to reduce the computational cost. It supports norm-conserving and ultrasoft pseudopotentials, spin–orbit coupling, and polar electron–phonon interactions for bulk and 2D materials. Hybrid MPI plus OpenMP parallelization is implemented to enable efficient calculations on large systems (up to at least 50 atoms) using high-performance computing. Taken together, Perturbo provides efficient and broadly applicable ab initio tools to investigate electron–phonon interactions and carrier dynamics quantitatively in metals, semiconductors, insulators, and 2D materials.
DOI: 10.17632/cjwxfw4btt
title: KinetiX: A performance portable code generator for chemical kinetics and transport properties

description: We present KinetiX, a software toolkit to generate computationally efficient fuel-specific routines for the chemical source term, thermodynamic and mixture-averaged transport properties for use in combustion simulation codes. The C++ routines are designed for high-performance execution on both CPU and GPU architectures. On CPUs, chemical kinetics computations are optimized by eliminating redundant operations and using data alignment and loops with trivial access patterns that enable auto-vectorization, reducing the latency of complex mathematical operations. On GPUs, performance is improved by loop unrolling, reducing the number of costly exponential evaluations and limiting the number of live variables for better register usage. The accuracy of the generated routines is checked against reference values computed using Cantera and the maximum relative errors are below 10^-7. We evaluate the performance of the kernels on some of the latest CPU and GPU architectures from AMD and NVIDIA, i.e., AMD EPYC 9653, AMD MI250X, and NVIDIA H100. The routines generated by KinetiX outperform the general-purpose Cantera library, achieving speedups of up to 2.4x for species production rates and 3.2x for mixture-averaged transport properties on CPUs. Compared to the routines generated by PelePhysics (CEPTR), KinetiX achieves speedups of up to 2.6x on CPUs and 1.7x on GPUs for the species production rates kernel on a single-threaded basis.
DOI: 10.6084/m9.figshare.15156498.v1
title: Sup Table.1

description: The sequences of siRNAs for RNA interference.
DOI: 10.6084/m9.figshare.19069604.v1
title: Plas-5k dataset

description: This CSV file contains the Binding Affinity and other important features obtained by simulating 5000 protein-ligand complexes. The calculations were performed using MM-PBSA. <br>It should be noted that all the energy values are in kcal/mol unit.
DOI: 10.6084/m9.figshare.23741895.v1
title: TRAIN 1 JN LOCATION 2.xlsx

description: This is acceleration data in excel at location 2.
DOI: 10.6084/m9.figshare.24681054.v1
title: Envrionmental data for: Invasive earthworms shift soil microbial community structure in northern North American forest ecosystems

description: Invasive earthworms colonise ecosystems around the globe. Compared to other species invasions, earthworm invasions have received little attention. Previous studies indicated their tremendous effects on resident soil biota representing a major part of the terrestrial biodiversity. We investigated effects of earthworm invasion on soil microbial communities in three forests in North America by conducting DNA-sequencing of soil bacteria, fungi, and protists in two soil depths. Our study shows that microbial diversity was lower in highly invaded forest areas. While bacterial diversity was strongly affected compared to fungi and protists, fungal community composition and family dominance were strongly affected compared to bacteria and protists. We found most species specialised on invasion in fungi, mainly represented by saprotrophs. Comparably, few protist species, mostly bacterivorous, were specialised on invasion. As one of the first observational studies, we investigated earthworm invasion on three kingdoms showing distinct taxa- and trophic level-specific responses to earthworm invasion.
DOI: 10.6084/m9.figshare.25650705.v4
title: HYPOD-X: Comprehensive experimental datasets of quasicrystals and their approximants

description: <b>Note</b>If you use HYPOD-X as a resource in your research, please cite the following paper.<br>Fujita, E., Liu, C., Ishikawa, A. <i>et al.</i> Comprehensive experimental datasets of quasicrystals and their approximants. <i>Sci. Data</i> <b>11</b>, 1211 (2024). https://doi.org/10.1038/s41597-024-04043-z<b>Overview</b>Quasicrystals are solid-state materials with unique symmetries, such as icosahedral and decagonal diffraction patterns, first discovered in 1984. Since then, numerous quasicrystals have been identified, and extensive research has been conducted to explore their properties. However, a systematically organized dataset compiling the findings has not been available. Additionally, the difficulty of applying calculations due to quasiperiodicity has hindered the development of datasets. To address this issue, we developed HYPOD-X by focusing on experimental data. The data were manually or semi-automatically extracted from scientific literature and then organized in an accessible CSV format. We hope that this dataset will serve as a foundation for furture experimental investigations and drive new discoveries.<b>Datasets</b><b>Composition dataset</b><br>Content: 1,448 compositions<br>Data source: Text or tables in literature from 130 journal articles<br><b>Phase region dataset</b><br>Content: 556 phases, 16,208 points<br>Data source: Figures of 49 Al ternary phase diagrams<br><b>Properties dataset</b><br>Contents: 1,449 temperature-dependent curves, 52,311 data points<br>Data source: 490 figures in 193 papers
DOI: 10.17632/cfz68tkwfk
title: Additively Manufactured Multi Principal Element Alloy Corrosion Database

description: The dataset includes information regarding the corrosion of additively manufactured (AM) multi principal element alloys (MPEAs). It was compiled for a critical review paper.

The dataset has been processed to allow machine learning (ML) operations. This includes parsing of alloy names/compositions into their individual elemental makeup (in atomic fraction) and calculating the entropy of mixing and valence electron concentration (VEC).

This database includes alloy composition, phase type, AM processing, test electrolyte type and concentration, entropy of mixing, VEC, corrosion potential, pitting potential, and corrosion current density.
DOI: 10.17632/zgdjg5b3cs
title: 4R_EIT System

description: Files of "A Low-Cost, Portable 32-Channel EIT System with Four Rings Based on AFE4300 for Body Composition Analysis".
DOI: 10.17632/bfrm4wbdrz
title: Acne and Insulin Resistance: A Systematic Review and Meta-analysis

description: Supplementary Materials for "Acne and Insulin Resistance: A Systematic Review and Meta-analysis"
DOI: 10.17632/g4gkp5v6d9
title: Replication Files for "GVCs and Trade Elasticities with Multistage Production" by Robert Johnson and Andreas Moxnes

description: This dataset includes replication data and code for "GVCs and Trade Elasticities with Multistage Production" by Robert Johnson and Andreas Moxnes.
DOI: 10.17632/khdmjd85w3
title: Structural and geochronological constraints on the collision between the Chinese Altai and the West Junggar in Central Asia: implication for deformation response and geodynamic evolution of arc-arc collision

description: This dataset supports the submitted article "Structural and geochronological constraints on the collision between the Chinese Altai and the West Junggar in Central Asia: implication for deformation response and geodynamic evolution of arc-arc collision". It includes a kmz file to show major lithological units and structural patterns in the study area (Data Set 1), and geochronological and Hf isotope data (Data Set 2 and Data Set 3).
DOI: 10.6084/m9.figshare.20416593.v1
title: Wolfberry genomes and the evolution of Lycium (Solanaceae)

description: Wolfberry <em>Lycium</em>, an economically important genus of the Solanaceae family, contains approximately 80 species and shows a fragmented distribution pattern among the Northern and Southern Hemispheres. Although several herbaceous species of Solanaceae have been subjected to genome sequencing, thus far, no genome sequences of woody representatives have been available. Here, we sequenced the genomes of <em>Lycium barbarum</em>. Integration with other genomes provides clear evidence supporting a whole-genome triplication (WGT) event shared by all hitherto sequenced solanaceous plants, which occurred shortly after the divergence of Solanaceae and Convolvulaceae.
DOI: 10.6084/m9.figshare.23061176.v1
title: Gamificação no Ensino de Engenharia de Software: Guidelines para Apoio ao Professor. <b>Acesso ao protótipo: https://ferramenta-g.vercel.app/</b>

description: <b>Acess: https://ferramenta-g.vercel.app/</b>This repository consists of three main datasets: the interview script, the participant characterization response table, and the interview transcripts. The interview script is a document that describes the structure and questions posed to the participants during the study. The participant characterization response table contains demographic information and other relevant details provided by the participants prior to the interviews. The interview transcripts are complete and detailed records of the conversations held between the interviewers and the participants. This data repository aims to promote research transparency and reproducibility, enabling other researchers to utilize this data for further analysis, validation, or the development of new research approaches.
DOI: 10.17632/6r9xpkxgjr
title: Personal thermal comfort models with wearable sensors
DOI: 10.6084/m9.figshare.4769791.v12
title: numpy-stl

description: Simple library to make working with STL files (and 3D objects in general) fast and easy.
DOI: 10.17632/zf26ww9rjj
title: Burnout assessment tool

description: The detailed questionnaire for burnout assessment tool.
DOI: 10.6084/m9.figshare.3153997.v1
title: Data Friendships paper

description: See code for description
DOI: 10.6084/m9.figshare.7149905.v1
title: Acoustic data

description: Dataset of seabed bottom types according to Biosonics acoustic mapping in an unsupervised classification approach.
DOI: 10.60893/figshare.jap.25845700.v1
title: Supplementary Material Section A-E

description: Supplementary material for A. Contribution of microscope illumination light to heat generation, B. How to measure bubble radius, position, and velocity, C. Estimation of history force, D. Fitting theoretical equations to experimentally obtained R and Ub, and E. Estimation of bubble acceleration.
DOI: 10.6084/m9.figshare.19354676.v1
title: Heterogeneity effect on ASR

description: The data provided here for plotting figures in our paper.
DOI: 10.6084/m9.figshare.24790656.v1
title: Experimental Kelvin-Helmholtz Results

description: A Kelvin-Helmholtz instability is formed when two fluids of different densities exert a shear on one another at their interface when flowing in opposite directions. This dataset presents video results from a low-cost, small-scale, experimental tilt tube apparatus. Representative experiments were conducted with fresh water and salt water of different densities, and results showed that both the amplitude of the waves and the amount of time the instability was visible decreased with increasing salt water salinity.
DOI: 10.6084/m9.figshare.25138634.v1
title: Construction Projects Dataset

description: Construction projects data
DOI: 10.6084/m9.figshare.28451048.v1
title: Supplementary Material for: Development of fall risk classification models for community-dwelling older adults using latent class analysis and machine learning

description: Introduction: To identify fall risk groups among community-dwelling older adults in South Korea and build a classification model by investigating risk-associated factors.
Methods: This cross-sectional study analyzed data of 9,231 older adults from the the 2020 Elderly Survey. We used latent class analysis to identify fall risk groups based on fall indicators. Thereafter, classification models were developed with these identified groups as outcome variables.
Results: Latent class analysis results indicated that a three-class model was more interpretable and fit the data better than other models. Among the models, the XGBoost algorithm displayed superior performance (accuracy = 0.70, precision = 0.69, recall = 0.70, F1-score = 0.68). Key variables associated with fall risk groups included self-rated health, cognitive function, recent healthcare use, and assistance needed in instrumental activities of daily living.
Conclusion: The study adopted a preventive approach by differentiating among low-, moderate-, and high-fall-risk groups, thus providing valuable insights for healthcare professionals. Identifying these risk factors can support the development of customized fall prevention programs for older adults.