cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22766756
title: Environmetal Variables at Camera trapping Sites - Manu National Park, Peru

description: This dataset contains camera trap location ID's as rows and environmental variable information of each camera trap site as columns. <br> The environmental variables included are: NDVI, distance to lake, distance to river, distance to trail, distance to settlement, and location/hunting category (non-hunted at Cocha Cashu; or hunted: Maizal, Tayakome, Yomibato). <br> NDVI was extracted from a Landsat 8 raster with 30m pixel resolution across years 2013-2015 using Google Earth Engine code editor. For each pixel NDVI was calculated using the spectral band equation (Near Infrared - Red) / (Near Infrared + Red). <br> Hunting trails were georeferenced with a GPS unit (Garmin GPSMAP 62 CSx with external antennas) during the camera trap survey. <br> Settlements, rivers, and lakes were digitised in QGIS version 3.16.5 using a false colour composite Landsat 8 image at 30m resolution derived from Google Earth Engine. Distance indices were computed for each layer (1m x 1m) and then extracted, as well as NDVI, to each camera trap point coordinate.
DOI: 10.6084/m9.figshare.22770923
title: Analysis of Root Causes of Anomalies in PRs

description: Two researchers identified the root causes of anomalies by analyzing comments and context in PR. Any discrepancies between them were discussed to reach a consensus.
DOI: 10.6084/m9.figshare.22770860
title: <strong> Data and code from: </strong>Will a large complex system be productive?

description: The dataset of 149 empirical food webs and the MATLAB code for simulated food webs analyzed in the paper "Will a large complex system be productive?" (published in Ecology Letters) is provided. Detailed methods see the paper. <br>
DOI: 10.6084/m9.figshare.22770860.v1
title: <strong> Data and code from: </strong>Will a large complex system be productive?

description: The dataset of 149 empirical food webs and the MATLAB code for simulated food webs analyzed in the paper "Will a large complex system be productive?" (published in Ecology Letters) is provided. Detailed methods see the paper. <br>
DOI: 10.5281/zenodo.7900289
title: Online survey data: Exploring the socio-economic dynamics and innovation capacities of rural food and farming microbusinesses

description: Online survey data which, in compilation with focus group data, formed the basis for our NICRE-funded report into the socio-economic dynamics and innovation capacities of rural food and farming microbusinesses. Full report is available here: https://eprints.glos.ac.uk/11449/
DOI: 10.5281/zenodo.7900290
title: Online survey data: Exploring the socio-economic dynamics and innovation capacities of rural food and farming microbusinesses

description: Online survey data which, in compilation with focus group data, formed the basis for our NICRE-funded report into the socio-economic dynamics and innovation capacities of rural food and farming microbusinesses. Full report is available here: https://eprints.glos.ac.uk/11449/
DOI: 10.5281/zenodo.7900258
title: Combining formal methods and Bayesian approach for inferring discrete-state stochastic models from steady-state data

description: Model, data, and a script to a paper of respective name
DOI: 10.5281/zenodo.7900257
title: Combining formal methods and Bayesian approach for inferring discrete-state stochastic models from steady-state data

description: Model, data, and a script to a paper of respective name
DOI: 10.5281/zenodo.7850784
title: Spitzer Data Fusion Astronomical Photometric Filter Database

description: A collection of Astronomical Photometric Filters created as part of the Spitzer Data Fusion project - https://mattiavaccari.net/df - https://doi.org/10.5281/zenodo.6120913
DOI: 10.5281/zenodo.7861889
title: The Spitzer Data Fusion Astronomical Photometric Filter Database

description: A collection of Astronomical Photometric Filters created as part of the Spitzer Data Fusion project https://doi.org/10.5281/zenodo.6120913 - https://mattiavaccari.net/df - https://mattiavaccari.net/df/specz Lucia Marchetti and Mattia Vaccari acknowledge financial support from the Inter-University Institute for Data Intensive Astronomy (IDIA), a partnership of the University of Cape Town, the University of Pretoria, the University of the Western Cape and the South African Radio Astronomy Observatory, and from the South African Department of Science and Innovation's National Research Foundation under the ISARP RADIOSKY2020 Joint Research Scheme (DSI-NRF Grant Number 113121) and the CSUR HIPPO Project (DSI-NRF Grant Number 121291).
DOI: 10.6084/m9.figshare.22770863
title: DX.xlsx

description: Secondary metabolite content of tea plant leaves
DOI: 10.6084/m9.figshare.22770863.v1
title: DX.xlsx

description: Secondary metabolite content of tea plant leaves
DOI: 10.34740/kaggle/dsv/5610689
title: Mahanagar Yatayat Dataset
DOI: 10.6084/m9.figshare.22766666.v1
title: Mammal Species Relative Abundance Matrix - Manu National Park, Peru

description: This dataset is a mammal species abundance matrix, with camera trap ID's as rows and species names as columns. <br> Data was collected using camera traps in Manu National Park, Madre de Dios, Peru at Cocha Cashu Biological Station (2019, July-August, dry season) and at the indigenous communities:Yomibato, Tayakome, and Maizal (2013-2015, wet and dry seasons). <br> Cocha Cashu camera ID codes include code "CT_No." , for single traps or "Name_PCT" for paired traps. Single traps were spaced 500m in a regular grid, and paired traps were placed inside the grid originally part of an individual jaguar identification study. Traps were installed 30 - 60 cm above the ground on a tree on access trails and were active for 24 hrs/day. Trapping effort was 1,312 trap nights. <br> Camera traps at indigenous communities include ID code "MCT_No" for Maizal, "T_No" for Tayakome, "YCT_No" for Yomibato. At each community, camera traps were placed in the hunting zone, spaced 2 km apart with an additional camera in the centre at 1.6 km apart from other cameras, conforming to TEAM Network methodology. Trapping effort: Maizal: 3,630; Tayakome: 6,375; Yomibato: 3,165 trap nights. <br> Independent species capture events, dates, and times were extracted in R statistical programming language using the Camtrap R package. Photos of the same species within the same hour were excluded to maintain independent capture events. <br> The relative abundance for each species for each season across all years was calculated as the number of independent capture events divided by the total number of nights each camera was active and then the result was multiplied by 100. Abundances were then averaged across both seasons.
DOI: 10.6084/m9.figshare.22766666
title: Mammal Species Relative Abundance Matrix - Manu National Park, Peru

description: This dataset is a mammal species abundance matrix, with camera trap ID's as rows and species names as columns. <br> Data was collected using camera traps in Manu National Park, Madre de Dios, Peru at Cocha Cashu Biological Station (2019, July-August, dry season) and at the indigenous communities:Yomibato, Tayakome, and Maizal (2013-2015, wet and dry seasons). <br> Cocha Cashu camera ID codes include code "CT_No." , for single traps or "Name_PCT" for paired traps. Single traps were spaced 500m in a regular grid, and paired traps were placed inside the grid originally part of an individual jaguar identification study. Traps were installed 30 - 60 cm above the ground on a tree on access trails and were active for 24 hrs/day. Trapping effort was 1,312 trap nights. <br> Camera traps at indigenous communities include ID code "MCT_No" for Maizal, "T_No" for Tayakome, "YCT_No" for Yomibato. At each community, camera traps were placed in the hunting zone, spaced 2 km apart with an additional camera in the centre at 1.6 km apart from other cameras, conforming to TEAM Network methodology. Trapping effort: Maizal: 3,630; Tayakome: 6,375; Yomibato: 3,165 trap nights. <br> Independent species capture events, dates, and times were extracted in R statistical programming language using the Camtrap R package. Photos of the same species within the same hour were excluded to maintain independent capture events. <br> The relative abundance for each species for each season across all years was calculated as the number of independent capture events divided by the total number of nights each camera was active and then the result was multiplied by 100. Abundances were then averaged across both seasons.
DOI: 10.26302/sshade/experiment_zy_20180212_000
title: VIS-NIR reflectance spectra of CO2 ice particles produced by crushing and sieving a compact slab of CO2 ice

description: The VIS-NIR reflectance spectrum of a piece of compact CO2 ice slab (commercial sample) was measured as well as the spectra of different particle size fractions of crushed CO2 ice produced by crushing the compact ice and dry sieving the powder. Vis multispectral + NIR low resolution and Vis-NIR high resolution spectra.
DOI: 10.5281/zenodo.7733001
title: Data for: DNA barcoding and conservation of rattans in trade

description: Data for project DNA barcoding and conservation of rattans in trade (https://www.kew.org/science/our-science/projects/sustainable-rattan)
DOI: 10.5281/zenodo.7778478
title: RattanID data

description: Data for project DNA barcoding and conservation of rattans in trade (https://www.kew.org/science/our-science/projects/sustainable-rattan)
DOI: 10.5281/zenodo.7817443
title: RattanID

description: Data for project DNA barcoding and conservation of rattans in trade (https://www.kew.org/science/our-science/projects/sustainable-rattan)
DOI: 10.5281/zenodo.7818064
title: RattanID - a molecular identification toolkit for rattan palms

description: Reference dataset and auxiliary files for the RattanID toolkit (https://github.com/BenKuhnhaeuser/RattanID).
DOI: 10.26302/sshade/experiment_zy_20180216_001
title: VIS-NIR reflectance spectra of water frost condensed at the surface of a piece of compact CO2 ice

description: A piece of compact CO2 ice (commercial slab) was exposed to humid air outdoors (93% RH), resulting in the inhomogeneous deposition of water frost at the surface. Average reflectance spectra over three different regions of interest were then calculated. Vis multispectral + NIR low resolution and Vis-NIR high resolution spectra.
DOI: 10.6084/m9.figshare.22767077
title: Gastric microbiome changes in relation with <em>Helicobacter pylori </em>resistance Analysis

description: Inadequate antimicrobial treatment has led to multidrug-resistant (MDR) bacteria, including <em>Helicobacter pylori</em> (<em>H. pylori</em>), which one of the notable pathogens in the stomach. Antibiotic-induced changes in the microbiota can negatively affect the host. This study aimed to determine the influence of <em>H. pylori</em> resistance on the diversity and abundance of the stomach microbiome. Sixty-nine <em>H. pylori</em> positive samples were eligible after quality filtering. Following resistance status to five antibiotics, samples were classified into 24 sensitive, 24 single resistance, 16 double resistance, 5 triple resistance. Samples were mostly resistant to metronidazole (73.33%; 33/45). Comparation of four groups displayed significantly elevated α-diversity parameters under the multidrug resistance condition (all <em>P </em>&lt;0.05). A notable change was observed in triple-resistant compared to sensitive (<em>P </em>&lt;0.05) and double-resistant (<em>P </em>&lt;0.05) groups. Differences in β-diversity by UniFrac and Jaccard were not significant in terms of the resistance (<em>P</em>=0.113 and <em>P</em>=0.275, respectively). In the triple-resistant group, the relative abundance of <em>Helicobacter </em>genera was lower, whereas that of <em>Streptococcus </em>increased. Moreover, the linear discriminant analysis effect size (LEfSe) was associated with the presence of <em>Corynebacterium</em> and <em>Saccharimonadales</em> in the single-resistant group and <em>Pseudomonas</em> and <em>Cloacibacterium</em> in the triple-resistant group. <br> Our results suggest that the resistant samples showed a higher trend of diversity and evenness than the sensitive samples. The abundance of <em>H. pylori</em> in the triple-resistant samples decreased with increasing cohabitation of pathogenic bacteria, which may support antimicrobial resistance. However, antibiotic susceptibility determined by the E-test may not completely represent the resistance status.
DOI: 10.6084/m9.figshare.22767077.v1
title: Gastric microbiome changes in relation with <em>Helicobacter pylori </em>resistance Analysis

description: Inadequate antimicrobial treatment has led to multidrug-resistant (MDR) bacteria, including <em>Helicobacter pylori</em> (<em>H. pylori</em>), which one of the notable pathogens in the stomach. Antibiotic-induced changes in the microbiota can negatively affect the host. This study aimed to determine the influence of <em>H. pylori</em> resistance on the diversity and abundance of the stomach microbiome. Sixty-nine <em>H. pylori</em> positive samples were eligible after quality filtering. Following resistance status to five antibiotics, samples were classified into 24 sensitive, 24 single resistance, 16 double resistance, 5 triple resistance. Samples were mostly resistant to metronidazole (73.33%; 33/45). Comparation of four groups displayed significantly elevated α-diversity parameters under the multidrug resistance condition (all <em>P </em>&lt;0.05). A notable change was observed in triple-resistant compared to sensitive (<em>P </em>&lt;0.05) and double-resistant (<em>P </em>&lt;0.05) groups. Differences in β-diversity by UniFrac and Jaccard were not significant in terms of the resistance (<em>P</em>=0.113 and <em>P</em>=0.275, respectively). In the triple-resistant group, the relative abundance of <em>Helicobacter </em>genera was lower, whereas that of <em>Streptococcus </em>increased. Moreover, the linear discriminant analysis effect size (LEfSe) was associated with the presence of <em>Corynebacterium</em> and <em>Saccharimonadales</em> in the single-resistant group and <em>Pseudomonas</em> and <em>Cloacibacterium</em> in the triple-resistant group. <br> Our results suggest that the resistant samples showed a higher trend of diversity and evenness than the sensitive samples. The abundance of <em>H. pylori</em> in the triple-resistant samples decreased with increasing cohabitation of pathogenic bacteria, which may support antimicrobial resistance. However, antibiotic susceptibility determined by the E-test may not completely represent the resistance status.
DOI: 10.26302/sshade/experiment_zy_20180216_000
title: VIS-NIR reflectance spectra of binary mixtures of particulate CO2 ice (400-800 µm) and regolith simulant JSC Mars-1 in variable amount

description: Particulate CO2 ice produced by crushing a piece of compact CO2 ice and sieving the powder to the 400-800 µm range is mixed intimately with variable amount of soil simulant JSC Mars-1 (25, 50, 65, 90 and 95 wt.% of soil simulant) and the VIS-NIR reflectance spectra of the mixtures is measured. Vis multispectral + NIR low resolution and Vis-NIR high resolution spectra.
DOI: 10.26302/sshade/experiment_zy_20180209_000
title: VIS-NIR reflectance spectra of binary mixtures of CO2 frost (10-100 µm) and fine-grained spherical water ice particles (4.5 µm average diameter)

description: CO2 frost (10-100 µm) produced by adiabatic expansion of gas is mixed with variable amounts of fine-grained water ice particles (spherical, type SPIPA-A, 4.5 µm average diameter) and the reflectance measured. Vis multispectral + NIR low resolution and Vis-NIR high resolution spectra.
DOI: 10.26302/sshade/experiment_zy_20180214_000
title: VIS-NIR reflectance spectra of binary mixtures of coarse-grained crushed CO2 ice particles (400-800 µm) and spherical fine-grained water ice particles (4.5 µm average diameter)

description: Particulate CO2 ice produced by crushing a piece of compact CO2 ice and sieving the powder to the 400-800 µm range is mixed with variable amounts of fine-grained water ice (type SPIPA-A, 4.5 µm average) and the reflectance measured. Vis multispectral + NIR low resolution and Vis-NIR high resolution spectra.
DOI: 10.26302/sshade/experiment_zy_20180213_000
title: VIS-NIR reflectance spectra of binary mixtures of coarse-grained crushed CO2 ice particles (400-800 µm) and spherical water ice particles (67 µm average diameter)

description: Particulate CO2 ice produced by crushing a piece of compact CO2 ice and sieving the powder to the 400-800 µm range is mixed with variable amounts of water ice (type SPIPA-B, 67 µm average) and the reflectance measured. Vis multispectral + NIR low resolution and Vis-NIR high resolution spectra.
DOI: 10.26302/sshade/experiment_zy_20180208_000
title: VIS-NIR reflectance spectra of binary mixtures of CO2 frost (10-100 µm) and spherical water ice particles (67 µm average diameter)

description: CO2 frost (10-100 µm) produced by adiabatic expansion of gas is mixed with variable amounts of water ice particles (spherical, type SPIPA-B, 67 µm average diameter) and the reflectance measured. Vis multispectral + NIR low resolution and Vis-NIR high resolution spectra.
DOI: 10.26302/sshade/experiment_zy_20180207_000
title: VIS-NIR reflectance spectra collected during a sublimation experiment with ternary mixtures of CO2 frost, spherical water ice particles and JSC Mars-1 regolith simulant

description: Four different ternary mixtures of CO2 frost, H2O ice and the JSC Mars-1 regolith simulant were produced and the samples were all submitted to slow sublimation at low temperature and ambient pressure. Multispectral/low-res VIS-NIR reflectance spectra were recorded every 30 minutes.
DOI: 10.5281/zenodo.7900753
title: GEOS-Chem simulation: Hg forest fluxes

description: Publication: A spatial assessment of current and future foliar Hg uptake fluxes across European forests This dataset contains modelled values of forest Hg fluxes to Europe from GEOS-Chem. lon: longitude lat: latitude avg_dep_flux_season: forest Hg flux values (g km<sup>-2</sup> d<sup>-1</sup>) averaged over one growing season per spatial tile
DOI: 10.5281/zenodo.7900752
title: GEOS-Chem simulation: Hg forest fluxes

description: Publication: A spatial assessment of current and future foliar Hg uptake fluxes across European forests This dataset contains modelled values of forest Hg fluxes to Europe from GEOS-Chem. lon: longitude lat: latitude avg_dep_flux_season: forest Hg flux values (g km<sup>-2</sup> d<sup>-1</sup>) averaged over one growing season per spatial tile
DOI: 10.5281/zenodo.7900741
title: Docking of chloroquine and piperaquine to PfCRT_Dd2 and to the PfCRT_Dd2 mutations conferring piperaquine resistance

description: PDB files of the docking of chloroquine and piperaquine to the PfCRT_Dd2 variant and to the Dd2 mutants investigated reported in the manuscript "PfCRT mutations conferring piperaquine resistance in falciparum malaria shape the kinetics of quinoline drug binding and transport" by Guillermo Martin Gomez; Giulia D'Arrigo; Fiona Berger; Cecilia P. Sanchez; Rebecca C. Wade and Michael Lanzer submitted to PLOS Pathogens 1. <strong>Dockings.zip </strong>contains <strong>a)</strong> the individual pdb files of the PfCRT_Dd2 variants models prior to preparation with maestro and <strong>b)</strong> sub-folders with the docking results for each PfCRT_Dd2 variant and for PfCRT_7G8 2. <strong>Simulations.zip </strong>contains the input file for the simulated systems. Each sub-folder contains: assembly.pdb - structure of the complex in PDB format assembly.prmtop - topology file in AMBER assembly.inpcrd - coordinates file in AMBER final.pdb - structure after NPT production
DOI: 10.5281/zenodo.7900740
title: Docking of chloroquine and piperaquine to PfCRT_Dd2 and to the PfCRT_Dd2 mutations conferring piperaquine resistance

description: PDB files of the docking of chloroquine and piperaquine to the PfCRT_Dd2 variant and to the Dd2 mutants investigated reported in the manuscript "PfCRT mutations conferring piperaquine resistance in falciparum malaria shape the kinetics of quinoline drug binding and transport" by Guillermo Martin Gomez; Giulia D'Arrigo; Fiona Berger; Cecilia P. Sanchez; Rebecca C. Wade and Michael Lanzer submitted to PLOS Pathogens 1. <strong>Dockings.zip </strong>contains <strong>a)</strong> the individual pdb files of the PfCRT_Dd2 variants models prior to preparation with maestro and <strong>b)</strong> sub-folders with the docking results for each PfCRT_Dd2 variant and for PfCRT_7G8 2. <strong>Simulations.zip </strong>contains the input file for the simulated systems. Each sub-folder contains: assembly.pdb - structure of the complex in PDB format assembly.prmtop - topology file in AMBER assembly.inpcrd - coordinates file in AMBER final.pdb - structure after NPT production
DOI: 10.12751/g-node.8s1yed
title: Goff-et-al-2023 VIP interneuron impairment promotes in vivo circuit dysfunction and autism-related behaviors in Dravet syndrome

description: Dravet Syndrome (DS) is a severe neurodevelopmental disorder caused by loss of function variants in SCN1A which encodes the voltage-gated sodium channel subunit Nav1.1. We recently showed that neocortical vasoactive intestinal peptide interneurons (VIP-INs) express Nav1.1 and are hypoexcitable in DS (Scn1a+/-) mice. Here, we investigated VIP-IN function at the circuit and behavioral level by performing in vivo 2-photon calcium imaging in awake WT and Scn1a+/- mice. VIP-IN and pyramidal neuron activation during behavioral transition from quiet wakefulness to active running was diminished in Scn1a+/- mice, and optogenetic activation of VIP-INs restored pyramidal neuron activity to WT levels during locomotion. VIP-IN selective Scn1a deletion reproduced core autism spectrum disorder-related behaviors in addition to cellular- and circuit-level deficits in VIP-IN function, but without epilepsy, sudden death, or avoidance behaviors seen in the global model. Hence, VIP-INs are impaired in vivo and may underlie non-seizure cognitive and behavioral comorbidities in DS.
description: IsSupplementTo: Goff, K. M. & Goldberg, E. M. VIP interneuron impairment promotes in vivo circuit dysfunction and autism-related behaviors in Dravet syndrome. Cell Reports (Accepted, 2023).
DOI: 10.5517/ccdc.csd.cc2608xf
title: CCDC 2026064: Experimental Crystal Structure Determination

description: Related Article: Xiaomin Li, Junyi Wang, Fengfeng Xue, Yichen Wu, Hualong Xu, Tao Yi, Qiaowei Li|2021|Angew.Chem.,Int.Ed.|60|2534|doi:10.1002/anie.202012947
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc1kgd7n
title: CCDC 1443801: Experimental Crystal Structure Determination

description: Related Article: Xin Xing|2015|CSD Communication|||
description: Related Article: Li-Ming Zhang, Li-Rong Wen, Xing Xin, Ming Li|2023|Tetrahedron Lett.|121|154463|doi:10.1016/j.tetlet.2023.154463
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.