cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17019239
title: Mapping to (Bio)schema(s).org from ABCD2.06 for Dataset Search

description: This table systematically documents how elements of the ABCD 2.06 vocabulary for biodiversity datasets are translated into Bioschemas (and schema.org) properties and types to support NFDI4Biodiversity's aim of FAIRifying biodiversity data and beyond. 

Structure

Each row corresponds to one ABCD element - organized by functional "Element Group" - and shows:



ABCD 2.06 Element: XML path for that element in the ABCD schema

Element URI: Uniform Resource Identifier for that ABCD element

Bioschemas/schema.org Property: equivalent schema.org or Bioschemas property

Bioschemas/schema.org (Data)Types: expected types for that property (e.g., Text, URL, Person, BioSample, Taxon, GeoCoordinates)

Description: concise explanation of the element's meaning

Mapping Notes: implementation guidance


Purpose

In essence, the mapping table translates ABCD 2.06 into schema.org/Bioschemas markup to enhance dataset discoverability. For this, it maps ABCD:Dataset-level information to Bioschemas:Dataset properties while simultaneously aggregating and summarizing ABCD:Unit-level specimen data in a reasonable way. This structured metadata approach enables search platforms - including NFDI4Biodiversity's consortium-wide discovery infrastructure and Google Dataset Search - to effectively index, retrieve, and present biodiversity datasets to researchers and practitioners seeking relevant data for their work.
DOI: 10.15468/dl.4t386m
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphibia",
 "Geometry POLYGON ((43.7407 -15.8768, 43.6816 -15.9401, 46.1382 -15.9401, 46.1382 -15.1614, 46.0559 -15.2167, 45.4781 -15.3105, 44.725 -15.7042, 43.7407 -15.8768))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)"
 ]
}

 The dataset includes 73 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025896-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7f79v
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opuntia leucotricha",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 140 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025897-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25399/unisadata.30050986
title: Kruger National Park medium to large mammal species herd sizes & distances to the road - fieldwork data

description: The dataset consists of systematically recorded presences, from a vehicle, of medium to large mammal species within the Kruger National Park. There is 401 tar and 369 dirt road points within the dataset. Each dataset point has data on species presence, estimated proximity of the animals to the road and herd sizes. Each point also has the following data: estimated cloud cover percentage, surface wetness, rain, co-ordinates, vegetation biome (savanna), road surface, distance to the nearest natural water source and the total number of vehicles passing that point within a 10 minute period.
DOI: 10.25399/unisadata.30050986.v1
title: Kruger National Park medium to large mammal species herd sizes & distances to the road - fieldwork data

description: The dataset consists of systematically recorded presences, from a vehicle, of medium to large mammal species within the Kruger National Park. There is 401 tar and 369 dirt road points within the dataset. Each dataset point has data on species presence, estimated proximity of the animals to the road and herd sizes. Each point also has the following data: estimated cloud cover percentage, surface wetness, rain, co-ordinates, vegetation biome (savanna), road surface, distance to the nearest natural water source and the total number of vehicles passing that point within a 10 minute period.
DOI: 10.15468/dl.exjxxb
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opuntia leucotricha",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025898-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25399/unisadata.30050860
title: Phylogeny reveals non-random medicinal plant organs selection by local people in Benin

description: 1. Ethnobotany, the science of human-plant interactions, has for long focused on documenting the traditional knowledge that humans have developed and accumulated over centuries towards plant uses. However, how such knowledge is constructed remains poorly understood and some of the methodological approaches developed for this purpose have been criticized.2. Here, we combine negative binomial models and phylogenetic comparative methods to test whether selection of medicinal plant species and organs by local people are non-random using data from Benin, a country in West Africa with roughly 3,000 plant species.3. We found evidence for taxonomic and phylogenetic non-random selection of medicinal plants: some taxa are preferentially used for medicine. Our analysis uncovers that plant organs are also non-randomly selected for medicine. Beyond plant taxonomy, similar plant organs of closely related species tended to be used for similar treatments, because these organs are likely to have similar secondary chemistry. Such non-random organs selection was more apparent for plant organs such as roots, bark and leaves which are predicted to be more vital for population fitness and species persistence.4. Collectively, our study suggests that the emerging non-random pattern of medicinal plant selection may be a consequence of heterogenous within-plant distribution of secondary chemistry across different organs proportionally to their importance to plant fitness as predicted by the optimal defence theory.
DOI: 10.25399/unisadata.30050860.v1
title: Phylogeny reveals non-random medicinal plant organs selection by local people in Benin

description: 1. Ethnobotany, the science of human-plant interactions, has for long focused on documenting the traditional knowledge that humans have developed and accumulated over centuries towards plant uses. However, how such knowledge is constructed remains poorly understood and some of the methodological approaches developed for this purpose have been criticized.2. Here, we combine negative binomial models and phylogenetic comparative methods to test whether selection of medicinal plant species and organs by local people are non-random using data from Benin, a country in West Africa with roughly 3,000 plant species.3. We found evidence for taxonomic and phylogenetic non-random selection of medicinal plants: some taxa are preferentially used for medicine. Our analysis uncovers that plant organs are also non-randomly selected for medicine. Beyond plant taxonomy, similar plant organs of closely related species tended to be used for similar treatments, because these organs are likely to have similar secondary chemistry. Such non-random organs selection was more apparent for plant organs such as roots, bark and leaves which are predicted to be more vital for population fitness and species persistence.4. Collectively, our study suggests that the emerging non-random pattern of medicinal plant selection may be a consequence of heterogenous within-plant distribution of secondary chemistry across different organs proportionally to their importance to plant fitness as predicted by the optimal defence theory.
DOI: 10.15468/dl.ygr9rt
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opuntia leucotricha",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025899-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25399/unisadata.30050395
title: Plant specialisation may limit climate‐induced vegetation change to within topographic and edaphic niches on a sub‐Antarctic island

description: Extreme changes in temperature, rainfall and wind regimes have been correlated with plant species range expansion upslope on sub-Antarctic islands. Ongoing climatic changes are expected to continue driving changes in species distributions globally, but niche specialisations may limit the capacity for range shifts. We hypothesised that non-climatic characteristics of ecological niches of vascular plant species could limit climate induced range shifts. We determined the altitudinal ranges of vascular plant species (n=13) on sub-Antarctic Marion Island and measured air temperature, topographic, foliar and soil properties along transects on geologically distinct substrates. Climatic and non-climatic associations were determined using multiple linear regression and boosted regression tree (BRT) analyses. The degree of niche specialisation was determined using outlying mean index analysis (OMI) within the range of species on the island. Several species (7 of 13) exhibited niche-specialisation. Correlation analysis revealed that edaphic properties including soil depth, loss on ignition, the principal component of most soil nutrients (Mg, Cl, K, Ca, Cu, Zn, P, S), Si, Mn and clay dominated the BRT prediction of overall plant cover. Although air temperature was correlated with plant cover in linear models, model simplification dropped temperature in both BRT and linear models. As a consequence, multiple determinants, including temperature, climate, topography and soils control the distribution of vascular plant species on this sub-Antarctic island.
DOI: 10.25399/unisadata.30050395.v1
title: Plant specialisation may limit climate‐induced vegetation change to within topographic and edaphic niches on a sub‐Antarctic island

description: Extreme changes in temperature, rainfall and wind regimes have been correlated with plant species range expansion upslope on sub-Antarctic islands. Ongoing climatic changes are expected to continue driving changes in species distributions globally, but niche specialisations may limit the capacity for range shifts. We hypothesised that non-climatic characteristics of ecological niches of vascular plant species could limit climate induced range shifts. We determined the altitudinal ranges of vascular plant species (n=13) on sub-Antarctic Marion Island and measured air temperature, topographic, foliar and soil properties along transects on geologically distinct substrates. Climatic and non-climatic associations were determined using multiple linear regression and boosted regression tree (BRT) analyses. The degree of niche specialisation was determined using outlying mean index analysis (OMI) within the range of species on the island. Several species (7 of 13) exhibited niche-specialisation. Correlation analysis revealed that edaphic properties including soil depth, loss on ignition, the principal component of most soil nutrients (Mg, Cl, K, Ca, Cu, Zn, P, S), Si, Mn and clay dominated the BRT prediction of overall plant cover. Although air temperature was correlated with plant cover in linear models, model simplification dropped temperature in both BRT and linear models. As a consequence, multiple determinants, including temperature, climate, topography and soils control the distribution of vascular plant species on this sub-Antarctic island.
DOI: 10.15468/dl.xuune8
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hantzschia amphioxyss, Hapalosiphon, Heteroleibleinia, , Hippodonta, Homoeothrix, Kirchneriella, Klebsormidium, Kobayasiella, Kobayasiella subtilissima, Lagerheimia, Lemnicola, , Luticola goeppertiana, Dorofeyukea, Lyngbya, Melosira, Melosira varians, Merismopedia, Micractinium, Micrasterias, Microcystis, Monoraphidium, Mougeotia, Navicula angusta, Navicula antonii, Navicula capitatoradiata, Navicula cincta, Navicula cryptocephala, Navicula cryptotenelloides, Navicula erifuga, Navicula germainii, Navicula gregaria, Navicula heimansioides, Navicula libonensis, Navicula longicephala, Navicula minima, Navicula, Navicula notha, Navicula radiosa, Navicula ranomafanensis, Navicula recens, Navicula reichardtiana, Navicula rhynchocephala, Navicula riediana, Navicula rostellata, Navicula schroeteri, Navicula symmetrica, Navicula tripunctata, Navicula trivialis, Navicula veneta, Navicula zanoni, Navicymbula, Nitzschia, , Nitzschia agnewii, , Nitzschia archibaldii, Nitzschia aurariae, Nitzschia capitellata, , Nitzschia closterium, Nitzschia desertorum, Nitzschia dissipata, Nitzschia etoshensis, Nitzschia filiformis, , , Nitzschia intermedia, Nitzschia irremissa, Nitzschia liebetruthii, , Nitzschia littorea, , , Nitzschia nana, Nitzschia pura, , Nitzschia recta, Nitzschia sublinearis, Nitzschia communis, Nostoc, Nostoc commune, Oedogonium, Oedogonium minus, Oocystis, Orthoseira, Oscillatoria, Oscillatoria princeps, Oscillatoria sancta, Oscillatoria tenuis, Oxyneis, Palmella, Pediastrum, Pediastrum duplex, Phacus, Phormidium, Pinnularia acrosphaeria, Pinnularia, )",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.6372 -28.0032,16.2782 -28.5786,20.509 -28.5786,20.509 -24.0715,15.4933 -24.0715,15.4945 -24.1257,16.0509 -25.6631,15.6372 -28.0032))"
 ]
}

 The dataset includes 90 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025900-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30052111
title: Rs3367_Spike.pdb

description: Alphafold2 model coordinates for Rs3367-CoV spike.
DOI: 10.6084/m9.figshare.30052111.v1
title: Rs3367_Spike.pdb

description: Alphafold2 model coordinates for Rs3367-CoV spike.
DOI: 10.25399/unisadata.30050254
title: Data from: Revisiting Darwin's naturalization conundrum: explaining invasion success of non-native trees and shrubs in southern Africa

description: 1. Invasive species are detrimental ecologically and economically. Their negative impacts in Africa are extensive and call for a renewed commitment to better understand the correlates of invasion success. 2. Here, we explored several putative drivers of species invasion among woody non-native trees and shrubs in southern Africa, a region of high floristic diversity. We tested for differences in functional traits between plant categories using a combination of phylogenetic independent contrasts and a simulation-based phylogenetic anova. 3. We found that non-native species generally have longer flowering duration compared with native species and are generally hermaphroditic, and their dispersal is mostly abiotically mediated. We also revealed that non-native trees and shrubs that have become invasive are less closely related to native trees and shrubs than their non-invasive non-native counterparts. Non-natives that are more closely related to the native species pool may be more likely to possess traits suited to the new environment in which they find themselves and thus have greater chance of establishment. However, successful invaders are less closely related to the native pool, indicating evidence for competitive release or support for the vacant niche theory. 4. Synthesis. Non-native trees and shrubs in southern Africa are characterized by a suite of traits, including long flowering times, a hermaphroditic sexual system and abiotic dispersal, which may represent important adaptations promoting establishment. We suggest that differences in the evolutionary distances separating the native species pool from invasive and non-invasive species might help resolve Darwin's naturalization conundrum.
DOI: 10.25399/unisadata.30050254.v1
title: Data from: Revisiting Darwin's naturalization conundrum: explaining invasion success of non-native trees and shrubs in southern Africa

description: 1. Invasive species are detrimental ecologically and economically. Their negative impacts in Africa are extensive and call for a renewed commitment to better understand the correlates of invasion success. 2. Here, we explored several putative drivers of species invasion among woody non-native trees and shrubs in southern Africa, a region of high floristic diversity. We tested for differences in functional traits between plant categories using a combination of phylogenetic independent contrasts and a simulation-based phylogenetic anova. 3. We found that non-native species generally have longer flowering duration compared with native species and are generally hermaphroditic, and their dispersal is mostly abiotically mediated. We also revealed that non-native trees and shrubs that have become invasive are less closely related to native trees and shrubs than their non-invasive non-native counterparts. Non-natives that are more closely related to the native species pool may be more likely to possess traits suited to the new environment in which they find themselves and thus have greater chance of establishment. However, successful invaders are less closely related to the native pool, indicating evidence for competitive release or support for the vacant niche theory. 4. Synthesis. Non-native trees and shrubs in southern Africa are characterized by a suite of traits, including long flowering times, a hermaphroditic sexual system and abiotic dispersal, which may represent important adaptations promoting establishment. We suggest that differences in the evolutionary distances separating the native species pool from invasive and non-invasive species might help resolve Darwin's naturalization conundrum.
DOI: 10.5281/zenodo.17054211
title: LNB

description: Database including 493 patients evaluated for Lyme Neuroborreliosis (LNB) in Northwestern Romania
DOI: 10.15468/dl.qtqmw3
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fragaria chiloensis",
 "BasisOfRecord is Specimen",
 "Country is one of (Canada, United States of America, Mexico)",
 "HasCoordinate is true",
 "MediaType is Image"
 ]
}

 The dataset includes 242 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025902-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqkdjd
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Iguanodectes rachovii)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 91 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025904-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j9ta5u
title: Occurrence Download

description: A dataset containing 348 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Suthora davidiana",
 "Country is one of (Myanmar, Thailand, Lao People’s Democratic Republic, Cambodia, Viet Nam, Malaysia)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 348 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025903-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30052138
title: Alphafold2 modeling of Rs3367-CoV spike trimer for manuscript titled '<b>Bat sarbecovirus WIV1-CoV bears an adaptive mutation that alters spike dynamics and enhances ACE2 binding'.</b>

description: Alphafold2 model for Rs3367-CoV based on the WIV1-CoV tempalte with model input parameters, template, and model output statistics.
DOI: 10.6084/m9.figshare.30052138.v1
title: Alphafold2 modeling of Rs3367-CoV spike trimer for manuscript titled '<b>Bat sarbecovirus WIV1-CoV bears an adaptive mutation that alters spike dynamics and enhances ACE2 binding'.</b>

description: Alphafold2 model for Rs3367-CoV based on the WIV1-CoV tempalte with model input parameters, template, and model output statistics.
DOI: 10.15468/dl.8bfcqb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cobitis stephanidisi",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((40.81373 29.26705, 40.81373 50.94, -6.6 50.94, -6.6 29.26705, 40.81373 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025907-250827131500795/datasets/export for details.
DOI: 10.15468/dl.wvyg4c
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphibia",
 "Geometry POLYGON ((45.0245 -12.136, 44.6652 -11.6088, 43.9782 -11.7142, 43.8575 -11.1854, 43.5561 -10.9013, 42.9255 -11.043, 42.7331 -11.7654, 43.2052 -12.6542, 43.4803 -12.8847, 44.5705 -12.8806, 44.7256 -13.3177, 45.1376 -13.5063, 45.5464 -13.3432, 45.7456 -13.0171, 45.7852 -12.6623, 45.638 -12.4031, 45.0245 -12.136))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)"
 ]
}

 The dataset includes 98 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025905-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqrwd7
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opuntia leucotricha",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025909-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8kvss
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opuntia leucotricha",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025913-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.