cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.895883.v2
title: PyPy benchmarks with 300 iterations

description: Two runs with 300 iterations for PyPy's benchmarks. Shows that many of them have problems in that they show rather erratic behaviour.
DOI: 10.6084/m9.figshare.11771286.v1
title: Molecular dynamics simulations of coronavirus 2019-nCoV protease model in complex with G75 and G82 ligands

description: Molecular dynamics simulations (300 ps MD at 300 K) of comparative model of novel coronavirus 2019-nCoV protease Mpro in complex with the ligands G75 and G82. The starting position of the ligands has been respectively copied from 3SZN and 3TIU PDB structures.<br>The archives contain also an heatmap representing the protein-ligand contact frequencies. Green-boxed occurrences in the heatmap represent hydrogen bond formation during the simulation.<br>
DOI: 10.6084/m9.figshare.26408425.v3
title: Transcripciones

description: El proyecto de Intervención multidimensional (IM) tiene como objetivo mejorar prácticas de estilo de vida saludable y estado de nutrición y salud en escolares mexicanos: Desarrollo de una plataforma de intervención, ensayo clínico aleatorizado y propuesta de escalamiento, busca la adopción de prácticas de alimentación, actividad física y salud mental recomendadas en población escolar. Esto mediante la generación de un ambiente saludable dentro de las escuelas y en los entornos cercanos a estas, sumado a la promoción de cambios de comportamiento mediante estrategias de comunicación educativa.Se integraron 20 escuelas en tres estados de México, Campeche (8), Ciudad de México (CDMX (8)), Morelos (4), para todas las entidades se realizaron reuniones de trabajo con las autoridades educativas correspondientes, ellos proporcionaron una lista de 8 escuelas contaban con los criterios de inclusión: formar parte del sistema de educación básico, localizados en zonas urbanas, con una matrícula de al menos 1000 niños, además de contar con dos o más grupos de cada grado escolar y con una jornada matutina, posteriormente se aleatorizaron para la asignación de gurpo control o intervención.Así pues, en las tres entidades, se levantaron datos relacionados con conocimientos, hábitos, actitudes, prácticas y percepción respecto a los temas de alimentación saludable y sostenible, conductas del movimiento (actividad física) y factores psicosociales, así como la realización de mediciones antropométricas (peso, talla, circunferencia de cintura) en la población escolar de 4to grado, dentro de la línea inicial y final en las 20 escuelas primarias. La línea basal tuvo lugar en el periodo de noviembre de 2023 a febrero de 2024; la línea final se realizó de entre mayo y junio del 2024.<br>En adherencia al protocolo de investigación en el estado de Morelos se levantó el ensayo clínico dentro del Instituto Nacional de Salud Pública sede Cuernavaca. Preaviamente, se realizaron reuniones presenciales y en línea con los padres/madres de familia o tutores, así como a los niños que cursaban los grados 3°, 4° y 5° de primaria de 4 colegios particulares de la ciudad de Cuernavaca, con características de infraestructura similares a las primarias públicas; las invitaciones se realizaron de forma verbal explicando el objetivo del proyecto, así como las cartas de consentimiento y asentimiento.Se obtuvieron los datos de niños y niñas de las escuelas se clasificadas de forma aleatoria como “control” e “intervención”. Los participantes y padres/madres o tutores aceptaron su participación firmando una carta de asentimiento y consentimiento informado respectivamente, con base en lo establecido en la declaración de Helsinki y por la comisión de ética del Instituto Nacional de Salud Pública.Los datos que aquí se presentan son derivados del proyecto antes mencionados.
DOI: 10.25946/28537397.v1
title: Circadian Type and Physical Activity: Cognitive and Subjective Outcomes

description: This project will investigate the relationship between circadian type and adaptation promoting strategies on the improvement of cognitive performance and alertness ratings over 5 simulated night shifts. The project aims to determine whether markers of adaptation outside of circadian outcomes are influenced by individual differences and a physical activity intervention.
DOI: 10.6084/m9.figshare.7971122.v2
title: Zebrafish 3D tracking software

description: <b>Zebrafish 3D tracking software works in Matlab 2013.</b><br>The software is unsupported so please collaborate with a software specialist to update to current Matlab version. This will need to be done annually. Please see Deakin et al. 2019 below for set up. <br>Included are all files and the software code both indexed and formatted.<br><b>The software is free to use conditional upon citing the following in any outputs:</b>Deakin, AG, Buckley, J, AlZu'bi, HS, Cossins, AR, Spencer, JW, Al'Nuaimy, W, Young, IS, Thomson, JS & Sneddon, LU. 2019. Automated monitoring of behaviour in zebrafish after invasive procedures.<i> Scientific Reports DOI:10.1038/s41598-019-45464-w</i>AlZu'bi, HS. 2015. Analysis of human activities and animal behaviours based on computation intelligence. Ph.D Thesis, University of Liverpool, Liverpool, UK.<br>
DOI: 10.17632/7tmdmg776y
title: PREVALENCE OF DISTURBANCE OF BODY IMAGE PERCEPTION AND ENGAGEMENT IN RISKY BEHAVIORS FOR EATING DISORDERS MOTIVATED BY THE KOREAN WAVE

description: The aim of this study is to describe the prevalence of disturbance of body image perception and engagement in risky behaviors for eating disorders among Spanish-speaking fans residing in Western countries, motivated by the Korean wave. A quantitative methodology was employed for data collection. The data were collected online through an anonymous questionnaire created by the author on the Google Forms platform, comprising demographic questions, information about exposure to hallyu, body perception, body image perception disturbance and engagement in risky behaviors motivated by the Korean wave. To assess body image perception, the standard figural stimuli (SFS) scale, which consist of 9 body silhouettes ranging from underweight (1) to obese (9), was used. Statements with "yes/no" responses were used to evaluate the prevalence of behaviors motivated by the Korean wave.
Participants in the study were recruited online. The author distributed the questionnaire link on the X social network among hallyu fan communities. After 2 weeks of sharing the survey, 124 responses were collected, of which 3 were discarded due to incorrect completion. The link was shared in communities communicating exclusively in Spanish, and the inclusion criterion for admitting responses was that the participants resided in Western countries. The data were collected in Microsoft Excel and prevalence for each answer was calculated. 
A total of 67.8% of the participants reported comparing their bodies to those of Korean celebrities, and 53.7% experienced a disturbance in their body image perception after exposure to hallyu. Risk behaviors related to exercise were more prevalent among participants than were those related to eating. The majority of participants engaging in these behaviors were females aged 18 years or younger.
DOI: 10.17632/njzc3ntwpn
title: Shen and Ori-McKenney 2024 Code

description: MatLab Codes for 1) analyzing the spatial dependence of GEMs diffusion in BEAS-2B cells, and 2) analyzing the secretion of Rab6A vesicles. All of the necessary information to understand how the code was used to analyze specific cellular activities is detailed within the PDF.
DOI: 10.17632/t8gmky8ndy
title: Digital Harmony and Sustainable Future through Diffusion of Eco-Friendly Packaging Innovation “Beeswax Wrap”

description: The objects of this research are Perceived attributes of innovation (PAI), Communication channel (CC), Social system (SS), Change agent's Promotion Efforts (CAP), and Innovation Adoption Rate (IAR). This research uses a mixed method, where the quantitative stage identifies the main driving factors for the adoption of beeswax wrap innovation, and the qualitative stage observes the process of making beeswax wrap. The research instrument used a questionnaire distributed cross-sectionally in Bandung Municipality during January-March 2025 and continued with observation and interviews with beeswax wrap business actors in Bandung Municipality.
DOI: 10.17632/v7n8wdz5n5
title: estu101

description: Physical self concept, body composition, physical fitness
DOI: 10.6084/m9.figshare.13606988.v1
title: FAT-1+CPT-11_STUDY_FASTQ_QIIME2_PICRUST2_FILES

description: FAT-1+CPT-11 study FASTQ, QIIME2 and PICRUST2 files.
DOI: 10.6084/m9.figshare.1491488.v4
title: GO_oxidationFiltered

description: YEASTRACT Gene Ontology analysis of genes filtered based on having at least a 40% change to differential gene expression in at least one of three post-oxidation time points as compared to normal growth conditions. The three conditions were: (1) 10 min oxidative stress, (2) 60 min oxidative stress, (3) 60 min oxidative stress followed by 60 min no oxidative stress.
DOI: 10.6084/m9.figshare.25303789.v1
title: <b>Comprehensive classification of </b><b><i>TP53</i></b><b> somatic missense variants based on their impact on p53 structural stability</b>

description: Somatic variation is a major type of genetic variation contributing to human diseases, including cancer. The functional impact of many somatic variants including missense variants remains unclear, hindering the translation of such variation information into clinical applications. We previously developed a protein structural-based method, Ramachandran plot-molecular dynamics simulations (RP-MDS), to predict the function of germline missense variants based on their effects on protein structure stability, which produced successful predictions of the deleterious germline missense variants in multiple cancer-related genes. We reasoned that somatic missense variants and germline missense variants should have similar effects on the stability of the protein structure. In this study, we applied our protein structural-based approach, RP-MDS, to provide a comprehensive classification of the somatic missense variants in <i>TP53</i>. We analyzed 397 somatic missense variants and showed that 195 (49.1%) variants were deleterious due to their disruptions to p53 structure. The results were furthered validated by using a p53 - p21 promoter - green fluorescent protein (GFP) reporter gene assay. Our study demonstrated that deleterious somatic missense variants can be identified by referring to their effects on protein structural stability.
DOI: 10.6084/m9.figshare.714096.v1
title: Review of bwa mem

description: This fileset contains a written review of v2 of Heng Li's manuscript on bwa mem, as retrieved from arxiv.org. It also includes some basic benchmarking datasets and accuracy evaluation code applied to bwa mem and the LAST aligner (http://last.cbrc.jp).
DOI: 10.6084/m9.figshare.13643312.v1
title: Representative Data Set.xlsx

description: Data has been collected from three questionnaires- Sense of Coherence-13 (SOC-13), Multidimensional Scale of Perceived Social Support and Beck Anxiety Inventory.
DOI: 10.17632/fs9xxhh5yh
title: Global indicators for pedestrian streets by city

description: This dataset contains two indicators regarding pedestrianized roads in several cities around the globe. Namely, the dataset describes the "Total length of Pedestrian Streets (km)" and the "Share of Pedestrian Streets (%)" by city. We used OpenStreetMap (OSM) geospatial data and integrate the EU and OECD definition of cities to create comparable global indicators. The results reveal a chasm in car-free development mainly between Southern and Western European cities and their peers in other continents. Further details can be seen in the following paper: Bartzokas-Tsiompras, A., & Photis, Y.N., Utilizing OpenStreetMap data to measure and compare pedestrian street lengths in 992 cities around the world, IOP Conf. Ser.: Earth Environ. Sci, 2021.
DOI: 10.17632/wvd5x3mtg4
title: EDRIXS: An open source toolkit for simulating spectra of resonant inelastic x-ray scattering

description: Resonant inelastic x-ray scattering (RIXS) has become a very powerful experimental technique to probe a broad range of intrinsic elementary excitations, for example, from low energy phonons and (bi-)magnons to high energy d-d, charge-transfer and plasmon excitations in strongly correlated electronic systems. Due to the complexity of the RIXS cross-section and strong core-hole effects, theoretical simulation of the experimental RIXS spectra is still a difficult task which hampers the understanding of RIXS spectra and the development of the RIXS technique. In this paper, we present an open source toolkit (dubbed EDRIXS) to facilitate the simulations of RIXS spectra of strongly correlated materials based on exact diagonalization (ED) of certain model Hamiltonians. The model Hamiltonian can be from a single atom, small cluster or Anderson impurity model, with model parameters from density functional theory plus Wannier90 or dynamical mean-field theory calculations. The spectra of x-ray absorption spectroscopy (XAS) and RIXS are then calculated using Krylov subspace techniques. This toolkit contains highly efficient ED, XAS and RIXS solvers written in modern Fortran 90 language and a convenient Python library used to prepare inputs and set up calculations. We first give a short introduction to RIXS spectroscopy, and then we discuss the implementation details of this toolkit. Finally, we show three examples to demonstrate its usage.
DOI: 10.17632/z37v7z2fg5
title: Supplementary Table 1 for JAAD-D-24-00369R2

description: Overview of patient’s characteristics and surgical outcomes.
DOI: 10.25452/figshare.plus.22671172.v3
title: Brain Computer Interface Motor Imagery-EEG Dataset

description: Brain-computer interface (BCI) is an effective approach for users to control external software applications and devices only by decoding their brain activities and without engaging any muscles. The availability of a BCI dataset which are large-scale and high quality can stimulate the researchers from neighbouring research areas develop advanced deep learning algorithms to enrich the field of BCI. Therefore, it is necessary to build an EEG dataset with availability for the development and research of BCI system. This is a large and high-performance intuitive dataset from World Robot Conference Contest-BCI Robot Contest MI of upper limbs or upper and lower limbs with three recording sessions. Sixty-three healthy participants (all right-handed, aged 17-30, 18 females) were naive BCI users participated in this experiment, of which fifty-two subjects participated in the two-class MI experiment and eleven subjects participated in the three-class MI experiment. This dataset can be utilized for a wide range of BCI-related research questions: analysing the differences among recording sessions of the same subject, improving the decoding performance of algorithms.
DOI: 10.6084/m9.figshare.28050476.v1
title: Evaluation Scores Dataset: LLM and Human Assessment of Halal Tourism Websites for Knowledge Graph Construction

description: This dataset contains the raw evaluation scores used in the research paper "Enhancing Knowledge Graph Construction with Automated Source Evaluation Using Large Language Models" published in the Journal of Universal Computer Science (2024). The data represents comparative evaluations of Halal tourism websites in Japan, assessed by both Large Language Models (LLMs) and human experts.The dataset includes:LLM evaluation scores across multiple criteria (credibility, relevance, content quality, coverage, comprehensiveness, and accessibility) for four Halal tourism websites, using various LLM models including GPT-3.5-turbo, GPT-4, Google Gemini Pro, and Mixtral-8x7B-Instruct-v0.1Human expert evaluation scores from 22 respondents using the same criteria frameworkThese evaluations were conducted using a weighted criteria system (credibility: 30%, relevance: 24%, content quality: 21%, coverage: 8%, comprehensiveness: 8%, accessibility: 9%) to assess the suitability of websites as knowledge sources for constructing domain-specific knowledge graphs.The data underpins the comparative analysis between LLM and human evaluations, demonstrating the effectiveness of automated source evaluation in knowledge graph construction. This dataset can be valuable for researchers studying automated website evaluation, knowledge graph construction, or the application of LLMs in quality assessment tasks.
DOI: 10.17632/5d78g6mmng
title: Mexico´s forest diversity: wood densities

description: The data are associated with the following article (please look there for all information): Ricker, M., M.Á. Castillo-Santiago, G. Gutiérrez-García, E.M. Martínez, and E. Mondragón. Dataset about Mexico’s forest diversity: site locations of tree species, wood densities, and geographic database of forest-vegetation provinces. Data in Brief. Under review (January 2024).
DOI: 10.17632/wkkjh4466h
title: Data for: Development of extensional fault and fold system: insights from 3D seismic interpretation of the Enderby Terrace, NW Shelf of Australia

description: The included files are diagrams used in the paper. It shows how the geological research on marine basins were carried out and the results that depend on which we draw the conclusions.
DOI: 10.17632/wzvw4zbhzh
title: Paper - Optimizing Thermal Diffusivity Measurements for Fluids with Accessible 3D Printing and Arduino-Based Temperature Control

description: This study introduces an instrument to measure thermal diffusivity in fluids, called a Thermal Wave Resonator Cavity, constructed via additive manufacturing (3D printing) and significantly improved by integrating a temperature control system developed with an Arduino microcontroller. The device was assessed through measurement of the thermal diffusivity of distilled water both with and without temperature control. The results demonstrate that the temperature-controlled system yields significantly more reliable and reproducible thermal diffusivity measurements compared to the uncontrolled system. Furthermore, measurements of water’s thermal diffusivity at various temperatures corroborated values previously reported in the literature. This cost-effective and innovative solution leverages accessible technology to enhance the accuracy of thermal measurements, thereby democratizing access to traditionally expensive, high-quality scientific instruments. This approach has the potential to broaden research capabilities across various scientific disciplines by melding affordability with precision.
DOI: 10.6084/m9.figshare.25153019.v1
title: SimStudy_Results_Full_v1.xlsx

description: This is the raw data for the paper currently titled "Anchoring Autonomy: Understanding Seafarers’ Interaction with Energy Efficiency Decision Support Systems for Route Planning and the Role of Basic Psychological Needs"Onboard Decision Support Systems (DSS) for energy-efficient maritime route planning can be critical in achieving global goals for carbon reduction and sustainable transportation. However, research has shown that seafarers’ fuel reduction behaviors are hindered by goal conflicts and workload, reducing motivation and efficient use of automated supporting systems. Therefore, we examined seafarers’ (<i>N = </i>22) interactions with a DSS while planning routes in a high-fidelity bridge simulator. To gain a comprehensive picture, we assessed Usability, User Experience, Workload, Basic Psychological Need (BPN) fulfillment and Preferences for Automation Types, and conducted interviews. Despite positive system evaluation, especially hedonic User Experience, our analysis of BPN data points towards a perception of reduced autonomy when using the DSS. Similarly, seafarers frequently requested features increasing their autonomy (e.g. route editing). Our findings highlight the significance of considering BPNs, especially autonomy, in the human-centered design of DSS and automated tools for maritime transportation. Prioritizing these aspects can contribute to broader environmental and efficiency goals.
DOI: 10.17632/nd6fd96wnt
title: Raw data on FTIR, photo-DSC and dynamic DSC of triethylene glycol dimethacrylate and N-vinylpyrrolidone copolymerization at the presence of ionic liquids.

description: The repository contains files in txt. ANSI ans ASCII formats represented the differential scanning calorimetry and FTIR raw data used in the Data In Brief manuscript "Data on FTIR, photo-DSC and dynamic DSC of triethylene glycol dimethacrylate and N-vinylpyrrolidone copolymerization in the presence of ionic liquids".
DOI: 10.6084/m9.figshare.14790162.v2
title: Volatile profile of dynamic headspace sampling of aerial parts from graminoid plants

description: Volatile profile of dynamic headspace sampling of aerial parts from <i>Cyperus rotundus</i>, <i>Cyperus exaltatus</i>, <i>Cynodon dactylon</i>, <i>Panicum repens</i> and <i>Cenchrus</i> <i>setaceum</i>
DOI: 10.6084/m9.figshare.22154597.v1
title: Supplementary table - MAGs metabolism strain

description: Metabolic information for metagenome asembled genomes (MAGs) constructed from raw data uploaded to bioproject PRJEB57055. MAGs are equivalent to bacterial strains, and were dereplicated at 99% ANI. These strains orginated from the caeca of indigenous Ethiopoian chickens. MAGs were annotated using DRAM (https://github.com/WrightonLabCSU/DRAM).
DOI: 10.6084/m9.figshare.26030614.v1
title: Dataset for Academic Stress

description: The saved datasets are for the research on the longitudinal impacts of academic stress from parental expectations on adolescent depression. "Longitudinal_depression.dat" is the merged data from two waves of measurement. I used it for the analysis. The file with "inp" extension is the Mplus code for Mplus analysis, and it contains the names of the variables. The file with "out" extension is the Mplus output. The file with "txt" extension is the same as the file with "inp" extension.
DOI: 10.17632/4jmxwgtw4h
title: Temporal Dynamics of Motor Imagery Comparing Accuracy for Human and Robot Actions: Stimuli and Data

description: This study explored motor imagery of robotic versus human actions using a temporal judgment task.

Participants observed videos of actions performed by either a human or a NAO robot and then performed motor imagery of the observed action until a stop signal interrupted them. Subsequently, they completed a two-alternative forced choice task to identify the frame corresponding to their imagery stop point. The choice was between the correct frame and either a preceding ('Before') or succeeding ('After') frame. 

The availability of the participants’ motor system was also manipulated by comparing performance when their dominant arm was free versus restrained.

Results revealed higher accuracy for robotic actions compared to human actions. Furthermore, a systematic bias towards 'After' incorrect frames emerged, suggesting an accelerated nature of motor imagery. Crucially, the enhanced accuracy for robotic actions was primarily evident for 'After' incorrect frames, indicating that the predictability of robot movements may facilitate temporal precision, especially in the later stages of motor imagery. Arm restraint did not significantly modulate performance. 

These findings challenge simplistic embodied simulation accounts and underscore the role of action predictability and cognitive strategies in shaping the temporal dynamics of motor imagery, offering novel insights into human-robot interaction and potential implications for motor rehabilitation strategies.