cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.58366
title: Research data supporting "Differential biosynthesis and cellular permeability explain longitudinal gibberellin gradients in growing roots"

description: Datasets in support of the figures of "Differential biosynthesis and cellular permeability explain longitudinal gibberellin gradients in growing roots" publication in PNAS 2021 with first author Annalisa Rizza. See file Rizza et al.,2021 metadata confocal imaging and phenotypes .xlsx for details on biological data. The dataset contains experimental data on Arabidopsis thaliana roots and consists primarily of microscopy imaging data presented as Leica files (.lif) and root growth phenotyping data presented as Excel files (.xlsx) or TIFF (.tiff) images. Most imaging files are organised by data acquired and phenotyping files are organised by corresponding Figure number from the publication. Detailed explanation is found in the metadata excel file. Additional imaging files are presented as TIFF images (Scanned plates zip files, .tiff) and imaging and phenotyping data analysis presented as Origin Pro files (.opju). Finally, a set of modeling program files relating to the mathematical modeling described in the publication are provided (Modeling Programs zip file, .mat, .m files).
DOI: 10.6084/m9.figshare.c.3635426_d8.v1
title: Additional file 1: Table S1. of svclassify: a method to establish benchmark structural variant calls

description: Annotations for each of the SV calls as well as likely non-SV regions from the Platinum Genomes 2x100bps HiSeq aligned sequence dataset for NA12878 using svclassify. (CSV 4 kb)
DOI: 10.6084/m9.figshare.c.3635426_d12.v1
title: Additional file 12: Table S7. of svclassify: a method to establish benchmark structural variant calls

description: Manual inspection characteristics of the 20 randomly selected Personalis sites with Ď â  &gt;â  0.99 of one-class results. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3635426_d13.v1
title: Additional file 14: Table S9. of svclassify: a method to establish benchmark structural variant calls

description: Manual inspection characteristics of all 8 of the randomly selected Personalis sites with Ď â
DOI: 10.6084/m9.figshare.c.3635426_d16.v1
title: Additional file 16: Table S11. of svclassify: a method to establish benchmark structural variant calls

description: Manual inspection characteristics of the 9 randomly selected 1000 Genomes sites with 0.9
DOI: 10.6084/m9.figshare.c.3635426_d14.v1
title: Additional file 19: Table S14. of svclassify: a method to establish benchmark structural variant calls

description: Manual inspection characteristics of the insertions from Spiral Genetics using svviz. (XLSX 118 kb)
DOI: 10.6084/m9.figshare.c.3635426_d17.v1
title: Additional file 18: Table S13. of svclassify: a method to establish benchmark structural variant calls

description: Manual inspection characteristics of the 7 randomly selected 1000 Genomes sites with Ď â
DOI: 10.6084/m9.figshare.c.3635426_d19.v1
title: Additional file 15: Table S10. of svclassify: a method to establish benchmark structural variant calls

description: Manual inspection characteristics of the 20 randomly selected 1000 Genomes sites with Ď â  &gt;â  0.99 of one-class results. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3635426_d21.v1
title: Additional file 4: Table S4. of svclassify: a method to establish benchmark structural variant calls

description: Annotations for each of the SV calls as well as likely non-SV regions from the PacBio aligned sequence dataset for NA12878 using svclassify. (CSV 1.88 kb)
DOI: 10.6084/m9.figshare.c.3635432_d1.v1
title: Additional file 2: of Comparison of intraocular pressure andvault after implantation of implantable collamer lens with and without a central hole

description: The mean value and standard deviation of IOP of each subjectâ  s eyes at different time points. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3635432_d2.v1
title: Additional file 1: of Comparison of intraocular pressure andvault after implantation of implantable collamer lens with and without a central hole

description: The IOP and valuts of each subject's eyes at different time points. (XLSX 18 kb)
DOI: 10.15468/dl.qpkcqn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
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 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037892-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3635477_d1.v1
title: Additional file 2: of Selected heterozygosity at cis-regulatory sequences increases the expression homogeneity of a cell population in humans

description: Details of enrichment tests for the selected footprint SNPs in cis-regulatory regions of different cell types (Fig.Â 1b; Additional file 1: Figure S5). (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3635477_d2.v1
title: Additional file 4: of Selected heterozygosity at cis-regulatory sequences increases the expression homogeneity of a cell population in humans

description: Enrichment of the selected SNPs for TF binding QTLs. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3635477_d3.v1
title: Additional file 3: of Selected heterozygosity at cis-regulatory sequences increases the expression homogeneity of a cell population in humans

description: GO categories enriched in genes associated with the selected SNPs. (XLSX 18 kb)
DOI: 10.17863/cam.106529
title: I-CeM Lookup Table -- Hollerith Industry codes 1911 and 1921

description: This spreadsheet is designed to be used in conjunction with the Integrated Census Microdata (I-CeM) collection of historic census data covering the period 1851 to 1921. For further details of the I-CeM data collection, please visit the comprehensive project website at: https://www.campop.geog.cam.ac.uk/research/projects/icem/ Outline information on the I-CeM project are also provided on the README page of this spreadsheet. This file is specifically related to the I-CeM data collection variable HOLLERIND
DOI: 10.17863/cam.96972
title: Research data supporting - Energy landscapes and heat capacity signatures for peptides correlate with phase separation propensity

description: The discrete path sampling databases for various hexapeptides obtained using AMBER interfaced with GMIN, OPTIM and PATHSAMPLE programs for energy landscape exploration. Detailed description is given in the README file.
DOI: 10.6084/m9.figshare.c.3635507_d1.v1
title: MOESM1 of Microsatellite genotyping and genome-wide single nucleotide polymorphism-based indices of Plasmodium falciparum diversity within clinical infections

description: Additional file 1. Microsatellite genotype profiles of 95 Guinean P. falciparum clinical isolates as ranked by isolate F ws scores.
DOI: 10.6084/m9.figshare.c.3635519_d1.v1
title: MOESM2 of Influence of the agrochemicals used for rice and vegetable cultivation on insecticide resistance in malaria vectors in southern Côte d’Ivoire

description: Additional file 2. Chemical use for rice and vegetable cultivation in southern Côte d’Ivoire: crude answer’s from farmers.
DOI: 10.15468/dl.gc9gv9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
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 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037893-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.28046751
title: Formation of an Anthropogenic Rock: Mechanisms and Microstructures of Lithification of a Legacy Deposit of Cementitious Material

description: Table S1: Carbon and oxygen isotope data for the four analysed samples and associated reference standards across three analytical sessions
DOI: 10.6084/m9.figshare.28046751.v1
title: Formation of an Anthropogenic Rock: Mechanisms and Microstructures of Lithification of a Legacy Deposit of Cementitious Material

description: Table S1: Carbon and oxygen isotope data for the four analysed samples and associated reference standards across three analytical sessions
DOI: 10.6084/m9.figshare.c.3635552_d1.v1
title: Additional file 4: of Cancer biomarker discovery is improved by accounting for variability in general levels of drug sensitivity in pre-clinical models

description: All results from gene-drug association analysis in the CGP data, for an uncorrected analysis, when correcting for GLDS and when correcting for the 65 gene signature. (CSV 1.68 mb)
DOI: 10.6084/m9.figshare.c.3635552_d2.v1
title: Additional file 5: of Cancer biomarker discovery is improved by accounting for variability in general levels of drug sensitivity in pre-clinical models

description: All results from gene-drug association analysis in the CTRP data, for an uncorrected analysis, when correcting for GLDS and when correcting for the 65 gene signature. (CSV 149 mb)
DOI: 10.6084/m9.figshare.c.3635552_d3.v1
title: Additional file 3: of Cancer biomarker discovery is improved by accounting for variability in general levels of drug sensitivity in pre-clinical models

description: Supplementary Tables from the GSEA analysis. (XLS 2099 kb)
DOI: 10.6084/m9.figshare.c.3635567_d3.v1
title: Additional file 6: of The relationship between mitochondrial DNA haplotype and the reproductive capacity of domestic pigs (Sus scrofa domesticus)

description: Frequencies of mtDNA variants for all 33 samples sequenced by Next Generation Sequencing. (XLSX 140Â kb)
DOI: 10.6084/m9.figshare.c.3635597_d3.v1
title: Additional file 4: of An integrative analysis of small molecule transcriptional responses in the human malaria parasite Plasmodium falciparum

description: Top 100 and Bottom 100 gene lists for each drug perturbation. (XLSX 487 kb)
DOI: 10.6084/m9.figshare.c.3635597_d4.v1
title: Additional file 5: of An integrative analysis of small molecule transcriptional responses in the human malaria parasite Plasmodium falciparum

description: Drug GO-Matrix. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3635597_d5.v1
title: Additional file 7: of An integrative analysis of small molecule transcriptional responses in the human malaria parasite Plasmodium falciparum

description: Dose Response Profiling. (XLSX 15 kb)
DOI: 10.17863/cam.21566
title: Structural characterization of Si-ion irradiated Zr/Nb nano-multilayers with different individual layer thicknesses

description: XRD and HR-TEM analyses of Si-ion irradiated Zr/Nb nanoscale multilayers with different individual layer thicknesses.
DOI: 10.6084/m9.figshare.c.3635624_d1.v1
title: Additional file 1: Table S1. of Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling

description: List of media used for culture-enriched molecular profiling. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3635624_d2.v1
title: Additional file 4: Table S3. of Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling

description: HMP Most Wanted matches of Lachnospiraceae isolates from HV7 and IBS4 samples. (XLSX 59 kb)
DOI: 10.17863/cam.100255
title: Bearscroft Farm Excavations 2007-2020: Cambridge Archaeological Unit Digital Archive

description: The Cambridge Archaeological Unit (CAU) prepared a desk-based assessment for the site in Godmanchester in 2008, and trial trenching in the same year. The main site east of the A1198 was then excavated in 2014–15, and the final small areas to the west of the A1198 in 2020. The excavations revealed: • Neolithic pits and residual flints • an Early Iron Age pit alignment • a major Middle Iron Age boundary ditch which extended over 1.2 kilometres • an earlier Middle Iron Age open settlement by the pit alignment • a later Middle Iron Age enclosed settlement to the south, apparently occupied up until the Roman conquest for AD43 • a small Roman single-house settlement which was abandoned in the Early Roman period • Roman era-enclosures which survived into the Middle Roman period, and received a number of unusual inhumation burials—one of them accompanied by a dog and horse • Early Anglo-Saxon pot-built houses and sunken feature buildings, extending from a known settlement to the north under the business park site.
DOI: 10.6084/m9.figshare.c.3635624_d4.v1
title: Additional file 3: Table S2. of Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling

description: Classification of Lachnospiraceae isolates cultured from Donor HV7 and IBS4 fecal samples. (XLSX 38 kb)
DOI: 10.17863/cam.71406
title: Research Data supporting "Noise from a Model-Scale Vertical-Axis Wind Turbine", by W. R. Graham and C. E. Pearson

description: Cross-spectrum data underlying the results plotted in the paper. Further detail available in the README file included in the zipped package.
DOI: 10.6084/m9.figshare.c.3635666_d3.v1
title: Additional file 1: of Spatiotemporal trends in the discovery of new swine infectious agents

description: Characteristics of the new swine infectious agents. Disc: type of discovery (1: infectious agent species that was unknown before its discovery in pigs, 2: novel variant(s) from an infectious agent species known to infect pigs, 3: first infection of pigs by an infectious agent species known to infect other host species), Cont: context of discovery (1: infectious agent screening or research activities, 2: outbreak investigation), Host range (1: swine-specific, 2: infect other animal species, 3: host range includes humans), *: Only rotavirus variants classified according to the nucleotide-sequence-based classification system, and recognised by the Rotavirus Classification Working Group are considered. The list of references is available upon request to the authors.
DOI: 10.17863/cam.94619
title: Research data supporting "Isolating the effect of crosslink densities on mechanical properties of iPP using DPD"

description: This dataset contains input files required to conduct DPD simulations on iPP structures with 500 repeat units in LAMMPS. Two text files describing the non-bonded and bond interactions for iPP in DPD simulations, and another two test files providing an initial structure of iPP and input file for DPD calculations in LAMMPS.
DOI: 10.6084/m9.figshare.c.3635687_d2.v1
title: Additional file 2: of Reporting of financial conflicts of interest in clinical practice guidelines: a case study analysis of guidelines from the Canadian Medical Association Infobase

description: Author-level raw data. This table provides all of the anonymized raw data for each of the authors analyzed in our study. (XLSX 43Â kb)
DOI: 10.6084/m9.figshare.c.3635699_d1.v1
title: MOESM5 of Tumor size, stage and grade alterations of urinary peptidome in RCC

description: Additional file 5: Table S5.   Identification of MALDI signals varied according to tumour size, pT or grade. LM = linear mode, RM = reflector mode, PTM = possible hypothetical modification predicted by Mascot.
DOI: 10.6084/m9.figshare.c.3635699_d2.v1
title: MOESM2 of Tumor size, stage and grade alterations of urinary peptidome in RCC

description: Additional file 2: Table S2.   A) Peptides with a statistically significant (p  2b). Up/down refer to the over/under representation of the peptide in ccRCC patients compared to control subjects
DOI: 10.17863/cam.83674
title: Data for "Tuning the local chemical environment of ZnSe quantum dots with dithiols towards photocatalytic CO2 reduction"

description: The dataset contains the raw data that supports the findings of the study “Tuning the local chemical environment of ZnSe quantum dots with dithiols towards photocatalytic CO2 reduction”. Data was collected using the instrumentation described in the Methods section of the study.
DOI: 10.17863/cam.66515
title: LiDAR Data: Malet Street London

description: A RIEGL VZ‐400 (RIEGL Laser Measurement Systems GmbH) was utilised for LiDAR data collection. The scanner used has a wavelength of 1,550 nm, a beam divergence of 0.35 mrad and a measuring range of around 600 m. The LiDAR data was obtained from scanning Malet street and Hampstead Heath in London. All text files uploaded represent the coordinates (x,y and z) of every point in the point cloud dataset. There datasets were collected from 11 different locations. The first column of each dataset in the text file represents the x coordinates, the second column the y coordinates and the third column the z coordinates of every point collected along the measurements. The data text files were read with a MATLAB algorithm by incorporating the x,y and z coordinates of each point to create a 3D image of the scanned scene. A 360-degree view was obtained in this way.
DOI: 10.6084/m9.figshare.c.3635708_d3.v1
title: Additional file 1 of An accurate test for homogeneity of odds ratios based on Cochranâ  s Q-statistic

description: R program for computing the homogeneity test Q Îł .
DOI: 10.6084/m9.figshare.c.3635714_d1.v1
title: Additional file 1: of Thermal manipulation of the chicken embryo triggers differential gene expression in response to a later heat challenge

description: Upstream regulators found for each cluster. (XLSX 26 kb)
DOI: 10.17863/cam.26332
title: Supplementary data for Preparation of homoallylic amines via a three-component coupling process

description: Supplementary data for Preparation of homoallylic amines via a three-component coupling process
DOI: 10.17863/cam.66251
title: Data associated with: Exciton Diffusion in Highly-Ordered One Dimensional Conjugated Polymers: Effects of Back- Bone Torsion, Electronic Symmetry, Phonons and Annihilation

description: Origin work book containing absorption spectra, transient absorption data, transient absorption microscopy (TAM) data and associated mean-square displacement plots. Fluence dependent data is also included as well as modelling.
DOI: 10.17863/cam.110642
title: Research data supporting "Robust consistent single quantum dot strong coupling in plasmonic nanocavities"

description: data from open access paper with title listed. Fig. 1f: Average scattering spectra of &gt;800 NPoMs sorted into bins which all show clear energy splitting of coupled modes. Histogram (black dashed) and average spectra are sorted according to energy of lower (ω_-) and upper (ω_+) polaritons. Fig. 1g: Typical photoluminescence spectrum (red) of monolayer QD film in (c), with spectral distribution of exciton peak at different locations (expanded in inset). Fig. 2b: Photoluminescence spectra of weak- (red) and strong- (purple) coupled excitons, selected from measurements on &gt;800 NPoMs. Fig. 2c,d: Slow time evolution of photoluminescence spectra of (c) exciton- and (d) polariton-type NPoMs. Fig. 3a: Correlation of typical photoluminescence (orange) and scattering (blue) spectra of 7 NPoMs vs cavity detuning. Fig. 3b: Extracted anti-crossing curve of polariton (see text). Fig. 3c,d: Rabi splitting energies extracted from (c) scattering spectra (&gt;600 NPoMs) and (d) photoluminescence (&gt;350 NPoMs). Fig. 4a: Experimental (top) and simulated (bottom) scattering and PL spectra of single quantum dot-plasmonic nanocavity in strong coupling regime of near zero detuning. Fig. 4b: Simulated scattering and PL spectra of single quantum dot in plasmonic nanocavity for increasing coupling strengths shown. Fig. 5c,d: Emission spectra under (c) optical and (d) electrical excitation. Fig. 5e: Evolution of polariton modes over time as the plasmon mode blueshifts during facet reshaping.
DOI: 10.6084/m9.figshare.c.3635786_d1.v1
title: Additional file 4: of Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

description: Genes differentially expressed during S. carpocapsae development. Lists 4,557 DE genes (differential gene expression cutoff: FDR &lt; 10−5 and fold change &gt; 4×) from the eight DE gene expression clusters, and their gene expression levels (FPKM) during S. carpocapsae development (Fig. 3a). The far right column indicates which cluster each gene belongs to. Cluster A genes – genes with high expression in the L1, IJ, and adult stage. Cluster B genes - genes with high expression in the L1 and medium/low expression in the IJ stage. Cluster C genes – genes with high expression in the L1 and IJ stage. Cluster D genes – genes with high expression in the IJ stage. Cluster E genes - genes with high expression in the adult stage and medium/low expression in the L1 stage. Cluster F genes - genes with high expression in the L1 and adult stage. Cluster G genes - genes with high expression in the embryo stage. Cluster H genes – genes with high expression in the L1 stage. (TXT 166 kb)
DOI: 10.6084/m9.figshare.c.3635786_d2.v1
title: Additional file 6: of Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

description: S. carpocapsae and S. feltiae orthologs with conserved expression (cosine similarity &gt; 0.95). Lists 1,438â  S. carpocapsae orthologs that have conserved expression with S. feltiae during nematode development. The file includes the gene ID of S. carpocapsae (column 1), the ortholog expression similarity (cosine similarity, column 2), the expression values (in TPM) of the S. carpocapsae and S. feltiae orthologs during the time course in replicates (columns 3â  18), and the stage(s) that the ortholog expression is conserved in (column 19). (TXT 171Â kb)
DOI: 10.17863/cam.26409
title: Research data supporting "Efficient Non-fullerene Organic Solar Cells Employing Sequentially Deposited Donor-Acceptor Layers"

description: This dataset includes data for figures in the main text and supporting information. Figure 1c absorption; Figure 2a-inset-PCE statistics; Figure 2a-JV curves; Figure 2b-EQE; Figure 2c-PCE stability; Figure 3c-neutron scattering; Figure 4a-CT energetics; Figure 5-TA; Other figures in supporting information.