cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20131622.v1
title: CHARACTERIZATION OF STRICTO SENSU SCIENTIFIC PRODUCTION IN PSYCHOLOGY ON YOUNG UNIVERSITY STUDENTS (2008-2017)

description: ABSTRACT This article aims to characterize and systematize the scientific production by Brazilian stricto sensu postgraduate courses in Psychology regarding young people in Higher Education, developed from 2008 to 2017. The state of knowledge was outlined by means of keyword searches in the CAPES theses and dissertations catalog. In the end of the search, 78 works were selected, and information, obtained by reading the abstracts, was tabulated in Excel spreadsheets and analyzed quantitatively, considering: a) region, b) institution, c) year of defense, d) theoretical perspective, e) types of research, f) methodological procedures and g) themes studied. Among the results, the following stand out: the studies mostly come from the Southeast region; there is a greater number of productions and qualitative research works between the years 2013 and 2017. Concerning young people’s health, themes and studies on the true meaning of policies for access and permanence in Higher Education predominate.
DOI: 10.6084/m9.figshare.20131624
title: Molecular detection of omicron SARS-CoV-2 variant is achieved by RT-LAMP despite genomic mutations

description: BACKGROUND Severe acute respiratory syndrome coronavirus (SARS-CoV-2) omicron variant was first detected in South Africa in November 2021. Since then, the number of cases due to this variant increases enormously every day in different parts of the world. Mutations within omicron genome may impair the molecular detection resulting in false negative results during Coronavirus disease 19 (COVID-19) diagnosis. OBJECTIVES To verify if colorimetric reverse transcription loop-mediated isothermal amplification (RT-LAMP) targeting N and E genes would work efficiently to detect omicron SARS-CoV-2 variant and its sub-lineages. METHODS SARS-CoV-2 reverse transcription quantitative polymerase chain reaction (RT-qPCR) positive samples were sequenced by next generation DNA sequencing. The consensus sequences generated were submitted to Pangolin tool for SARS-CoV-2 lineage identification. RT-LAMP reactions were performed at 65ºC/30 min targeting N and E. FINDINGS SARS-CoV-2 omicron can be detected by RT-LAMP targeting N and E genes despite the genomic mutation of this more transmissible lineage. Omicron SARS-CoV-2 sub-lineages were tested and efficiently detected by RT-LAMP. We demonstrated that this test is very sensitive in detecting omicron variant, with LoD as low as 0.4 copies/µL. MAIN CONCLUSIONS Molecular detection of omicron SARS-CoV-2 variant and its sub-lineages can be achieved by RT-LAMP despite the genomic mutations as a very sensitive surveillance tool for COVID-19 molecular diagnosis.
DOI: 10.6084/m9.figshare.20131624.v1
title: Molecular detection of omicron SARS-CoV-2 variant is achieved by RT-LAMP despite genomic mutations

description: BACKGROUND Severe acute respiratory syndrome coronavirus (SARS-CoV-2) omicron variant was first detected in South Africa in November 2021. Since then, the number of cases due to this variant increases enormously every day in different parts of the world. Mutations within omicron genome may impair the molecular detection resulting in false negative results during Coronavirus disease 19 (COVID-19) diagnosis. OBJECTIVES To verify if colorimetric reverse transcription loop-mediated isothermal amplification (RT-LAMP) targeting N and E genes would work efficiently to detect omicron SARS-CoV-2 variant and its sub-lineages. METHODS SARS-CoV-2 reverse transcription quantitative polymerase chain reaction (RT-qPCR) positive samples were sequenced by next generation DNA sequencing. The consensus sequences generated were submitted to Pangolin tool for SARS-CoV-2 lineage identification. RT-LAMP reactions were performed at 65ºC/30 min targeting N and E. FINDINGS SARS-CoV-2 omicron can be detected by RT-LAMP targeting N and E genes despite the genomic mutation of this more transmissible lineage. Omicron SARS-CoV-2 sub-lineages were tested and efficiently detected by RT-LAMP. We demonstrated that this test is very sensitive in detecting omicron variant, with LoD as low as 0.4 copies/µL. MAIN CONCLUSIONS Molecular detection of omicron SARS-CoV-2 variant and its sub-lineages can be achieved by RT-LAMP despite the genomic mutations as a very sensitive surveillance tool for COVID-19 molecular diagnosis.
DOI: 10.6084/m9.figshare.20097442
title: A new species of the troglobitic genus Spelaeogammarus da Silva Brum, 1975 (Amphipoda: Artesiidae) from a cave in the Brazilian semi-arid region, with new records of its congener, Spelaeogammarus spinilacertus Koenemann and Holsinger, 2000

description: Abstract We propose a new species of the troglobitic genus Spelaeogammarus da Silva Brum, 1975, with data on its distribution, ecology, aspects of behavior, and conservation status. Spelaeogammarus ginae sp. nov. occurs in a single cave in the Serra do Ramalho karst area, of the northeastern Brazilian semi-arid region. We also provide new data on the distribution and conservation status of its congener, Spelaeogammarus spinilacertus Koenemann and Holsinger, 2000 that occurs in the upper phreatic aquifer inside caves from Chapada Diamantina domain. Both species occur in caves in the state of Bahia, northeastern Brazil.
DOI: 10.6084/m9.figshare.20097442.v1
title: A new species of the troglobitic genus Spelaeogammarus da Silva Brum, 1975 (Amphipoda: Artesiidae) from a cave in the Brazilian semi-arid region, with new records of its congener, Spelaeogammarus spinilacertus Koenemann and Holsinger, 2000

description: Abstract We propose a new species of the troglobitic genus Spelaeogammarus da Silva Brum, 1975, with data on its distribution, ecology, aspects of behavior, and conservation status. Spelaeogammarus ginae sp. nov. occurs in a single cave in the Serra do Ramalho karst area, of the northeastern Brazilian semi-arid region. We also provide new data on the distribution and conservation status of its congener, Spelaeogammarus spinilacertus Koenemann and Holsinger, 2000 that occurs in the upper phreatic aquifer inside caves from Chapada Diamantina domain. Both species occur in caves in the state of Bahia, northeastern Brazil.
DOI: 10.5281/zenodo.6695801
title: TADA QQ Experiment Results -T2DV2

description: The results of semantic labelling of numeric columns in the T2Dv2 dataset applying quantile-quantile plot.
DOI: 10.5281/zenodo.6695800
title: TADA QQ Experiment Results -T2DV2

description: The results of semantic labelling of numeric columns in the T2Dv2 dataset applying quantile-quantile plot.
DOI: 10.6084/m9.figshare.20131625.v1
title: Supplementary Material for: Brain Morphometric Correlates of Depressive Symptoms among Patients with and without Dementia

description: <b><i>Introduction:</i></b> Findings regarding brain morphometry among patients with dementia and concomitant depressive symptoms have been inconsistent. Thus, the aim of the present study was to test the hypothesis that dementia and concomitant depressive symptoms are associated with structural brain changes in the temporal lobe measured with structural magnetic resonance imaging (MRI). <b><i>Methods:</i></b> A sample of 492 patients from Norwegian memory clinics (<i>n</i> = 363) and Old Age Psychiatry services (<i>n</i> = 129) was studied. The assessment included the Cornell Scale for Depression in Dementia (CSDD), Instrumental Activities of Daily Living Scale, Mini Mental State Examination, and MRI of the brain, processed with FreeSurfer to derive ROI measures of cortical thickness, volume, and area using the Desikan-Killiany parcellation, as well as subcortical volumes. Dementia was diagnosed according to ICD-10 research criteria. Correlates of brain morphometry using multiple linear regression were examined. <b><i>Results:</i></b> Higher scores on the CSDD were associated with larger cortical volume (β = 0.125; <i>p</i> value = 0.003) and area of the left isthmus of the cingulate gyrus (β = 0.151; <i>p</i> value = &lt;0.001) across all patients. Inclusion of an interaction term (dementia × CSDD) revealed a smaller area in the left temporal pole (β = −0.345; <i>p</i> value = 0.001) and right-transverse temporal cortex (β = −0.321; <i>p</i> value = 0.001) in patients with dementia and depressive symptoms. <b><i>Discussion/Conclusion:</i></b> We confirm the previous findings of structural brain changes in temporal regions among patients with dementia and concomitant depressive symptoms. This may contribute to a better understanding of the mechanisms underlying depression in dementia. To the best of our knowledge, this is the largest study conducted on this topic to date.
DOI: 10.6084/m9.figshare.20130740.v1
title: Supplementary Material for: Identifying Subgroups of Cannabis Users Based on Help-Seeking Preferences: A Latent Class Analysis

description: <b><i>Background:</i></b> The majority of people with cannabis use disorder do not seek treatment. If we were able to gain more insight into different subgroups of cannabis users based on help-seeking preferences, we could use this information to inform the development and promotion of interventions targeted at specific subgroups of cannabis users, to ultimately narrow the treatment gap. <b><i>Methods:</i></b> An online survey was conducted among 1,015 Dutch frequent cannabis users (18–72 years) to assess their cannabis use, help-seeking preferences, psychopathology, and psychological distress. Latent class analysis was used to identify classes of cannabis users based on their help-seeking preferences. Differences between the identified classes in terms of sociodemographics, cannabis use, and psychopathology were examined. <b><i>Results:</i></b> We identified four classes with distinct preferences for support. Class 1 (“no support/only social,” <i>n</i> = 548) had a low probability of finding any form of support appealing other than social support. Class 2 (“online help,” <i>n</i> = 170) had relatively high probabilities of finding online help appealing. Class 3 (“GP/outpatient,” <i>n</i> = 208) had a relatively high probability of finding support from the general practitioner and outpatient substance use disorder treatment appealing. Class 4 (“all sources,” <i>n</i> = 89) had moderate to high probabilities for all sources of support. In terms of sociodemographics, differences between the classes were found with regard to gender and level of education. The classes were fairly similar with regard to cannabis use, only the “online help” class scored significantly lower on both cannabis use frequency and quantity compared to most of the other classes. In terms of psychopathology, the “GP/outpatient” class and the “all sources” class experienced more cannabis use-related problems and were more likely to report multiple past quit attempts than the “online help” class and the “no support/only social” class. <b><i>Conclusions:</i></b> Our study shows that there is a lot of inter-individual variation in how appealing various forms of help are to cannabis users. Our findings emphasize the importance of promoting a variety of treatment modalities for cannabis users, including real-life and digital options, and indicate what might appeal to whom.
DOI: 10.5281/zenodo.6696686
title: ChapbooksScotland-KG: A Knowlege Graph for representing the "Chapbooks Printed In Scotland" (1671 - 1893)

description: This Knowlege Graph represents the information of the "<strong>Chapbooks Printed In Scotland"</strong> (years: 1671 - 1893) collection in RDF (ttl format). This dataset comprises more than 3,000 chapbooks printed in Scotland from the 17th to 19th century. They form part of the Lauriston Castle Collection, which was bequeathed to the Library in 1926. It includes some 500 chapbook volumes containing around 5,500 individual items, more than half of which were printed in Scotland. The raw dataset is provided by the NLS in this link. As other NLS data collections, they are originally provided using two XMLs schemas: METS for descriptive, structural, technical and administrative metadata (Title, Author, Publisher, etc); and ALTO for encoding the OCR text of a page. In this work, we have extracted the information from METS and ALTO XMLS using defoe tool and developed a new information extraction defoe query , and created a new Knowlege Graph called ChapbooksScotland-KG. The ChapbooksScotland-KG uses the NLS Ontology to represent the information extracted. Furthermore, during the information extraction phase, we have employed several techniques to mitigate two common OCR errors: long-S and the line-break hyphenation. The ChapbooksScotland-KG contains 352,270 RDF triples. It has information from 2728 series and 3080 volumes. Each serie can have several Volumes, Suplements, references to Books; it also has an Editor and a Publisher, which can be a Person or an Organization. A Volume has several Pages, with text in them. The data model of the ChapbooksScotland-KG can be found here.
DOI: 10.5281/zenodo.6673994
title: ChapbooksScotland-KG: A Knowlege Graph for representing the "Chapbooks Printed In Scotland" (1671 - 1893)

description: This Knowlege Graph represents the information of the "<strong>Chapbooks Printed In Scotland"</strong> (years: 1671 - 1893) collection in RDF (ttl format). This dataset comprises more than 3,000 chapbooks printed in Scotland from the 17th to 19th century. They form part of the Lauriston Castle Collection, which was bequeathed to the Library in 1926. It includes some 500 chapbook volumes containing around 5,500 individual items, more than half of which were printed in Scotland. The raw dataset is provided by the NLS in this link. As other NLS data collections, they are originally provided using two XMLs schemas: METS for descriptive, structural, technical and administrative metadata (Title, Author, Publisher, etc); and ALTO for encoding the OCR text of a page. In this work, we have extracted the information from METS and ALTO XMLS using defoe tool and developed a new information extraction defoe query , and created a new Knowlege Graph called ChapbooksScotland-KG. The ChapbooksScotland-KG uses the NLS Ontology to represent the information extracted. Furthermore, during the information extraction phase, we have employed several techniques to mitigate two common OCR errors: long-S and the line-break hyphenation. The ChapbooksScotland-KG contains 352,270 RDF triples. It has information from 2728 series and 3080 volumes. Each serie can have several Volumes, Suplements, references to Books; it also has an Editor and a Publisher, which can be a Person or an Organization. A Volume has several Pages, with text in them. The data model of the ChapbooksScotland-KG can be found here.
DOI: 10.5281/zenodo.6684348
title: oncoEnrichRDB

description: Data repository for oncoEnrichR R package
DOI: 10.48420/19978016.v1
title: Data for "Links between Personality, Affective Cognition, Emotion Regulation and Affective Disorders"

description: Vulnerability to anxiety and depressive disorders is affected by risk and resilience factors, such as personality, use of emotion regulation strategies, and affective cognition. Previous research has identified personality constructs best explaining variance in anxiety and depression (Lyon et al, 2020; 2021), however the mediating mechanisms are unknown. This study aimed to investigate the mediating roles of emotion regulation strategies and affective cognition in the relationship between personality constructs and affective disorders. Data were collected from a sample of 276 students and staff at the University of Manchester. Measures included both broad and narrow Big Five personality constructs; COPE Inventory strategies; a dot-probe task to measure attentional biases to emotional information; both a questionnaire and a computerised cognitive to measure interpretation of emotional images; and measures of anxiety and depression.
DOI: 10.5281/zenodo.6676661
title: AESI Background Rates Literature Review & Visualitzation for Myelitis

description: SPEAC
description: The SPEAC Project is funded in whole by CEPI.
DOI: 10.5281/zenodo.6676660
title: AESI Background Rates Literature Review & Visualitzation for Myelitis

description: SPEAC
description: The SPEAC Project is funded in whole by CEPI.
DOI: 10.6084/m9.figshare.20131595.v1
title: summary FMT Ex Study

description: This dataset records raw data describing indices of neuroinflammation, insulin metabolism, glucose metabolism, learning and memory function in mice after fecal transplantation.
DOI: 10.6084/m9.figshare.20131595
title: summary FMT Ex Study

description: This dataset records raw data describing indices of neuroinflammation, insulin metabolism, glucose metabolism, learning and memory function in mice after fecal transplantation.
DOI: 10.5519/qd.te3s5pli
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1549 records)
DOI: 10.5281/zenodo.6685318
title: Low dose rate radiation induced secretion of TGF-β3 together with an activator in small extracellular vesicles modifies low dose hyper-radiosensitivity through ALK1 binding

description: This is a collection of results from all clonogenic assays on T-47D cells used in the manuscript "Low dose rate radiation induced secretion of TGF-β3 together with an activator in small extracellular vesicles modifies low dose hyper-radiosensitivity through ALK1 binding". T-47D cells were subjected to various pretreatments: low dose rate priming (0.1-0.3 Gy/h for 1 hour), small extracellular vesicles from irradiated or control cells, irradiated or control cell conditioned medium, MMP/ADAM inhibitor TAPI-2, recombinant TGF-B3, inhibitors of ALK1, ALK2, ALK5 or TGF-BRII, iNOS inhibitor 1400W, recombinant FKBP4, recombinant MMP14 and combinations of these. All pretreatments except low dose rate priming was administered for 24 hours. After pretreatments, cells were seeded to colonies and irradiated with 220 kV x-rays at a dose rate of 22.5 Gy/h or gamma rays from a Co-60 source at a dose rate of 20-25 Gy/h. Colonies were cultured for 2-3 weeks before fixation and manual counting.
description: This work was supported by EU FP7 grant No. 222741 (METOXIA), the Research Council of Norway, the Norwegian Cancer Society and Eckbos Legater.
DOI: 10.5281/zenodo.6685317
title: Low dose rate radiation induced secretion of TGF-β3 together with an activator in small extracellular vesicles modifies low dose hyper-radiosensitivity through ALK1 binding

description: This is a collection of results from all clonogenic assays on T-47D cells used in the manuscript "Low dose rate radiation induced secretion of TGF-β3 together with an activator in small extracellular vesicles modifies low dose hyper-radiosensitivity through ALK1 binding". T-47D cells were subjected to various pretreatments: low dose rate priming (0.1-0.3 Gy/h for 1 hour), small extracellular vesicles from irradiated or control cells, irradiated or control cell conditioned medium, MMP/ADAM inhibitor TAPI-2, recombinant TGF-B3, inhibitors of ALK1, ALK2, ALK5 or TGF-BRII, iNOS inhibitor 1400W, recombinant FKBP4, recombinant MMP14 and combinations of these. All pretreatments except low dose rate priming was administered for 24 hours. After pretreatments, cells were seeded to colonies and irradiated with 220 kV x-rays at a dose rate of 22.5 Gy/h or gamma rays from a Co-60 source at a dose rate of 20-25 Gy/h. Colonies were cultured for 2-3 weeks before fixation and manual counting.
description: This work was supported by EU FP7 grant No. 222741 (METOXIA), the Research Council of Norway, the Norwegian Cancer Society and Eckbos Legater.
DOI: 10.5281/zenodo.6676630
title: AESI Background Rates Literature Review & Visualitzation for Facial Palsy

description: AESI Background Rates Literature Review & Visualitzation for Facial Palsy
description: The SPEAC Project is funded in whole by CEPI.
DOI: 10.5281/zenodo.6676629
title: AESI Background Rates Literature Review & Visualitzation for Facial Palsy

description: AESI Background Rates Literature Review & Visualitzation for Facial Palsy
description: The SPEAC Project is funded in whole by CEPI.
DOI: 10.5281/zenodo.6676608
title: AESI Background Rates Literature Review & Visualitzation for Encephalitis

description: AESI Background Rates Literature Review & Visualitzation for Encephalitis
description: The SPEAC Project is funded in whole by CEPI.
DOI: 10.5281/zenodo.6676607
title: AESI Background Rates Literature Review & Visualitzation for Encephalitis

description: AESI Background Rates Literature Review & Visualitzation for Encephalitis
description: The SPEAC Project is funded in whole by CEPI.
DOI: 10.6084/m9.figshare.20131661
title: SI for Muli-Jinpingshan thrust

description: AHe, AFT and ZFT ages
DOI: 10.6084/m9.figshare.20131661.v1
title: SI for Muli-Jinpingshan thrust

description: AHe, AFT and ZFT ages
DOI: 10.5281/zenodo.6637951
title: Dataset for the Manuscript: Demonstration of optically-driven plasmonic nanomotors designed by deep learning networks

description: This repository contains the data corresponding to the manuscript "Demonstration of the optically-driven plasmonic nanomotor designed by deep learning networks." It consists of 5 parts: Machine learning, Numerical analysis, Rotation measurement, Scattering measurement, and Supplementary information. The code for the machine learning algorithm is available at "https://github.com/mintaechung/Nanomotor_Predictor_Generator." <strong>'Machine_learning.zip'</strong>: Correlation between optical torques calculated by SIE and predicted by trained CNN, Objective loss functions at the 1st iteration, and the torque distribution of the initial randomset and the output of the nanorotor generator after the 3rd iteration. <strong>'Numerical_analysis.zip'</strong>: MATLAB codes to retrieve 'Moments', 'Field intensity distribution', 'Poynting vectors', and 'Torques'. <strong>'Rotation_measurement.zip'</strong>: Raw videos, Intensity profiles of ROI, Rotation measurement results. <strong>'Scattering_measurement.zip'</strong>: Scattering intensity measurement with reference light. <strong>'Supplementary_Info.zip'</strong>: Random geometry generation, Optical torques of 6 blades, Expanded structure, Shrinkage, Polarization independence, Angular momentum, and Machine learning progress.
description: Funding from the European Research Council (ERC-2015-AdG-695206 Nanofactory)
DOI: 10.6084/m9.figshare.20131318.v1
title: Additional file 8 of Genomic analysis provides novel insights into diversification and taxonomy of Allorhizobium vitis (i.e. Agrobacterium vitis)

description: Additional file 8: Table S3. Pairwise ANIb comparisons amongst extended set of All. vitis species complex strain genomes towards species delimitation. Additionally, reference Rhizobiaceae strains were also included.
DOI: 10.6084/m9.figshare.20131658
title: summary gut microbiota FMT study of donor group

description: Donor group microbiota characteristics
DOI: 10.6084/m9.figshare.20131658.v1
title: summary gut microbiota FMT study of donor group

description: Donor group microbiota characteristics
DOI: 10.6084/m9.figshare.20131315.v1
title: Additional file 7 of Genomic analysis provides novel insights into diversification and taxonomy of Allorhizobium vitis (i.e. Agrobacterium vitis)

description: Additional file 7: Table S2. Pairwise OGRI comparisons amongst 14 All. vitis species complex strain genomes towards species delimitation. a) ANIb comparisons. b) ANIm comparisons. c) orthoANIu comparisons. d) fastANI comparisons. e) dDDH comparisons.