cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28234959.v2
title: Additional file 2 of Longitudinal association between DNA methylation and type 2 diabetes: findings from the KORA F4/FF4 study

description: Additional file 2. Table S1: Significant CpG sites associated with T2D; Table S2: Significant differentially methylated regions associated with T2D; Table S3: Related diseases or tissues; Table S4: Significant CpG sites associated with FPG; Table S5: Significant CpG sites associated with HbA1c; Table S6: Significant CpG sites associated with HOMA-IR; Table S7: Significant CpG sites associated with interaction between T2D and follow-up time; Table S8: Significant CpG sites associated with T2D from extended model; Table S9: Significant CpG sites associated with T2D from repeated methylation measurements; Table S10: Significant CpG sites associated with persistent diabetes; Table S11: Significant CpG sites associated with progression of diabetes status from NGT to diabetes; Table S12: Associated CpG-transcripts pairs; Table S13: Pathways associated to T2D.
DOI: 10.6084/m9.figshare.28234959.v1
title: Additional file 2 of Longitudinal association between DNA methylation and type 2 diabetes: findings from the KORA F4/FF4 study

description: Additional file 2. Table S1: Significant CpG sites associated with T2D; Table S2: Significant differentially methylated regions associated with T2D; Table S3: Related diseases or tissues; Table S4: Significant CpG sites associated with FPG; Table S5: Significant CpG sites associated with HbA1c; Table S6: Significant CpG sites associated with HOMA-IR; Table S7: Significant CpG sites associated with interaction between T2D and follow-up time; Table S8: Significant CpG sites associated with T2D from extended model; Table S9: Significant CpG sites associated with T2D from repeated methylation measurements; Table S10: Significant CpG sites associated with persistent diabetes; Table S11: Significant CpG sites associated with progression of diabetes status from NGT to diabetes; Table S12: Associated CpG-transcripts pairs; Table S13: Pathways associated to T2D.
DOI: 10.15468/dl.rukjgr
title: Occurrence Download

description: A dataset containing 28053 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus agrifolia Née"
 ]
}

 The dataset includes 28053 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029239-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r49td4
title: Occurrence Download

description: A dataset containing 530 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Trachypteris picta (Pallas, 1773)"
 ]
}

 The dataset includes 530 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029241-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26179/xahj-dq75
title: Robinson Ridge Lichen Segmentation Maps Using UAV imagery and Machine Learning
DOI: 10.6084/m9.figshare.29060532
title: Additional file 2 of The powdery mildew effector Eae1 targets a SAMS enzyme within the ethylene biosynthesis pathway to disrupt plant immunity

description: Additional file2: Table S1. Defense response and inhibiting INF1-induced hypersensitive response of CSEPs. Table S2. The result generated by blastp analysis of Eae1 sequence. Table S3. The Hevea brasiliensis proteins forming a complex with Eae1. Table S4. The qRT-PCR primers used in this study. Table S5. The dsRNA primers used in this study. Table S6. Details the constructing vector in this study. Table S7. The cDNA sequences used in this study.
DOI: 10.6084/m9.figshare.29060532.v1
title: Additional file 2 of The powdery mildew effector Eae1 targets a SAMS enzyme within the ethylene biosynthesis pathway to disrupt plant immunity

description: Additional file2: Table S1. Defense response and inhibiting INF1-induced hypersensitive response of CSEPs. Table S2. The result generated by blastp analysis of Eae1 sequence. Table S3. The Hevea brasiliensis proteins forming a complex with Eae1. Table S4. The qRT-PCR primers used in this study. Table S5. The dsRNA primers used in this study. Table S6. Details the constructing vector in this study. Table S7. The cDNA sequences used in this study.
DOI: 10.15468/dl.4xwcg5
title: Occurrence Download

description: A dataset containing 8372 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pistacia chinensis Bunge"
 ]
}

 The dataset includes 8372 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029242-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29060544
title: Additional file 1 of Interactions between time on diet, antibiotic treatment, and liver abscess development on the fecal microbiome of beef cattle

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.29060544.v1
title: Additional file 1 of Interactions between time on diet, antibiotic treatment, and liver abscess development on the fecal microbiome of beef cattle

description: Supplementary Material 1.
DOI: 10.5281/zenodo.15392887
title: "Whitelist" journals data obtained from OpenAlex

description: The dataset contains two samples of "White List" journals for December 2024 and February 2025. The data was collected based on API queries to OpenAlex and parsing the JSON file from the RCNI website where the "White List" is located. The following properties of "White List" journal objects were considered: ISSN, Title, journal level in the "White List", date accepted, journal ID in OpenAlex, database indexing information (Web of Science, Scopus, DOAJ), publisher and country of publishing, total citations, open access data, leading thematic topic, leading thematic field, authors from which countries published in the journal and the number of publications (if Russian authors were among them, an additional request was made for the number of publications in the journal with Russian authors by year).

These are SQLite database files that can be opened in DB Browser for SQLite.
DOI: 10.5281/zenodo.15392888
title: "Whitelist" journals data obtained from OpenAlex

description: The dataset contains two samples of "White List" journals for December 2024 and February 2025. The data was collected based on API queries to OpenAlex and parsing the JSON file from the RCNI website where the "White List" is located. The following properties of "White List" journal objects were considered: ISSN, Title, journal level in the "White List", date accepted, journal ID in OpenAlex, database indexing information (Web of Science, Scopus, DOAJ), publisher and country of publishing, total citations, open access data, leading thematic topic, leading thematic field, authors from which countries published in the journal and the number of publications (if Russian authors were among them, an additional request was made for the number of publications in the journal with Russian authors by year).

These are SQLite database files that can be opened in DB Browser for SQLite.
DOI: 10.6084/m9.figshare.29060577
title: Additional file 2 of Wildlife hunting and the increased risk of leprosy transmission in the tropical Americas: a pathogeographical study

description: Additional file 2.
DOI: 10.6084/m9.figshare.29060577.v1
title: Additional file 2 of Wildlife hunting and the increased risk of leprosy transmission in the tropical Americas: a pathogeographical study

description: Additional file 2.
DOI: 10.6084/m9.figshare.29060580
title: Additional file 3 of Wildlife hunting and the increased risk of leprosy transmission in the tropical Americas: a pathogeographical study

description: Additional file 3.
DOI: 10.6084/m9.figshare.29060580.v1
title: Additional file 3 of Wildlife hunting and the increased risk of leprosy transmission in the tropical Americas: a pathogeographical study

description: Additional file 3.
DOI: 10.6084/m9.figshare.29060586
title: Additional file 2 of Deciphering the role of RNA in regulating CTCF’s DNA binding affinity in leukemia cells

description: Additional file 2. Table S1 Statistical overview of ChIP-seq data analysis.
DOI: 10.6084/m9.figshare.29060589
title: Additional file 3 of Deciphering the role of RNA in regulating CTCF’s DNA binding affinity in leukemia cells

description: Additional file 3. Table S2 Reproducible ATAC-seq peak information
DOI: 10.6084/m9.figshare.29060589.v1
title: Additional file 3 of Deciphering the role of RNA in regulating CTCF’s DNA binding affinity in leukemia cells

description: Additional file 3. Table S2 Reproducible ATAC-seq peak information
DOI: 10.6084/m9.figshare.29060592
title: Additional file 4 of Deciphering the role of RNA in regulating CTCF’s DNA binding affinity in leukemia cells

description: Additional file 4. Table S3 Data summary of RNA-seq analysis collected in this study.
DOI: 10.6084/m9.figshare.29060592.v1
title: Additional file 4 of Deciphering the role of RNA in regulating CTCF’s DNA binding affinity in leukemia cells

description: Additional file 4. Table S3 Data summary of RNA-seq analysis collected in this study.
DOI: 10.6084/m9.figshare.29060595
title: Additional file 5 of Deciphering the role of RNA in regulating CTCF’s DNA binding affinity in leukemia cells

description: Additional file 5. Table S4 Statistical analysis across different studies.
DOI: 10.6084/m9.figshare.29060595.v1
title: Additional file 5 of Deciphering the role of RNA in regulating CTCF’s DNA binding affinity in leukemia cells

description: Additional file 5. Table S4 Statistical analysis across different studies.
DOI: 10.6084/m9.figshare.29060598
title: Additional file 6 of Deciphering the role of RNA in regulating CTCF’s DNA binding affinity in leukemia cells

description: Additional file 6. Q-PCR raw data.
DOI: 10.6084/m9.figshare.29060598.v1
title: Additional file 6 of Deciphering the role of RNA in regulating CTCF’s DNA binding affinity in leukemia cells

description: Additional file 6. Q-PCR raw data.
DOI: 10.15468/dl.puupnv
title: Occurrence Download

description: A dataset containing 209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (India, China, Myanmar, Viet Nam, Cambodia, Indonesia, Nepal, Philippines, Malaysia, Chinese Taipei, Bangladesh, Lao People’s Democratic Republic, Thailand, Bhutan)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Camelina Crantz"
 ]
}

 The dataset includes 209 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029243-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84yc3q
title: Occurrence Download

description: A dataset containing 4908 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syagrus romanzoffiana (Cham.) Glassman"
 ]
}

 The dataset includes 4908 records from 238 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029244-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29060703
title: Additional file 1 of Contact between soft tick vectors of African swine fever virus and invasive wild pigs in the southeastern USA

description: Additional file 1. Dataset S1. Occurrence of soft ticks in burrows and occurrence of pig DNA in tick pools. Supplementary_data_OTA.xls
DOI: 10.6084/m9.figshare.29060703.v1
title: Additional file 1 of Contact between soft tick vectors of African swine fever virus and invasive wild pigs in the southeastern USA

description: Additional file 1. Dataset S1. Occurrence of soft ticks in burrows and occurrence of pig DNA in tick pools. Supplementary_data_OTA.xls
DOI: 10.5281/zenodo.15400297
title: High Resolution Melt Electro-Written Scaffolds Promote Alignment of Human Skeletal Muscle Cells
DOI: 10.5281/zenodo.15400298
title: High Resolution Melt Electro-Written Scaffolds Promote Alignment of Human Skeletal Muscle Cells
DOI: 10.6084/m9.figshare.29060715
title: Additional file 2 of Genomic and immune profiling of breast cancer brain metastases

description: Supplementary Material 2. Pathways of interest tested. 79 pathways of interest from Hallmark pathways, KEGG, Gene Ontology (GO), and literature were selected a priori and included pathways relevant to oxidative phosphorylation, MAPK interacting serine/threonine Kinase (MNK), cyclin dependent kinase (CDK), DNA damage repair, and immune signaling. Column names include: Pathway type, biologically-relevant pathway group name; Pathway name, unique pathway identifier; Number of genes, number of genes in pathway; Source, source of pathway.
DOI: 10.6084/m9.figshare.29060715.v1
title: Additional file 2 of Genomic and immune profiling of breast cancer brain metastases

description: Supplementary Material 2. Pathways of interest tested. 79 pathways of interest from Hallmark pathways, KEGG, Gene Ontology (GO), and literature were selected a priori and included pathways relevant to oxidative phosphorylation, MAPK interacting serine/threonine Kinase (MNK), cyclin dependent kinase (CDK), DNA damage repair, and immune signaling. Column names include: Pathway type, biologically-relevant pathway group name; Pathway name, unique pathway identifier; Number of genes, number of genes in pathway; Source, source of pathway.
DOI: 10.6084/m9.figshare.29060718
title: Additional file 3 of Genomic and immune profiling of breast cancer brain metastases

description: Supplementary Material 3. Gene-wise summary of somatic and CNV alterations in clinically relevant and top 50 genes. Annotated details on the somatic and CNV alterations found in patients by gene. Column names include: Hugo_Symbol, HUGO gene symbol; nVariants, number of variants in gene; nSamples, number of samples with mutations in gene; nPatients, number of patients with mutations in gene.
DOI: 10.6084/m9.figshare.29060718.v1
title: Additional file 3 of Genomic and immune profiling of breast cancer brain metastases

description: Supplementary Material 3. Gene-wise summary of somatic and CNV alterations in clinically relevant and top 50 genes. Annotated details on the somatic and CNV alterations found in patients by gene. Column names include: Hugo_Symbol, HUGO gene symbol; nVariants, number of variants in gene; nSamples, number of samples with mutations in gene; nPatients, number of patients with mutations in gene.
DOI: 10.6084/m9.figshare.29060721
title: Additional file 4 of Genomic and immune profiling of breast cancer brain metastases

description: Supplementary Material 4. Variant summary of somatic and CNV alterations in clinically relevant and top 50 genes. Annotated details on the somatic and CNV alterations found in patients by variant. For each tab in the workbook, column names include: BrM.PAM50, PAM50 inferred subtype (only shown in “All” tab which includes all samples across subtypes); Hugo_Symbol, HUGO gene symbol; Chromosome, chromosome in which variant is located; Start_Position, variant start position; End_Position, variant end position; Ref_Alt, reference and alternate alleles separated by “/”; Variant_Classification, VEP variant classification; nSamples, number of samples with variant; nPatients, number of patients with variant.
DOI: 10.6084/m9.figshare.29060721.v1
title: Additional file 4 of Genomic and immune profiling of breast cancer brain metastases

description: Supplementary Material 4. Variant summary of somatic and CNV alterations in clinically relevant and top 50 genes. Annotated details on the somatic and CNV alterations found in patients by variant. For each tab in the workbook, column names include: BrM.PAM50, PAM50 inferred subtype (only shown in “All” tab which includes all samples across subtypes); Hugo_Symbol, HUGO gene symbol; Chromosome, chromosome in which variant is located; Start_Position, variant start position; End_Position, variant end position; Ref_Alt, reference and alternate alleles separated by “/”; Variant_Classification, VEP variant classification; nSamples, number of samples with variant; nPatients, number of patients with variant.
DOI: 10.6084/m9.figshare.29060724
title: Additional file 5 of Genomic and immune profiling of breast cancer brain metastases

description: Supplementary Material 5. Differentially expressed genes in matched ECT-BrM specimens. Differentially expressed genes (DEGs) in matched FFPE ECT vs FFPE BrM (n = 8 patients), where log2 fold changes greater than 1 represent higher expression in BrM. DEGs are defined by having an adjusted p-value less than 0.05 and the table includes the top 50 up-regulated and top 50 down-regulated DEGs, sorted by unadjusted p-value. Column names include: Gene symbol, HUGO gene symbol; Base mean, mean of the normalized counts divided by size factors over all samples; Log2 Fold Change, log2 fold change in gene expression; Log2 Fold Change SE, standard error of the log2 fold change; Wald test statistic; P, unadjusted Wald test p value; Adjusted P, FDR adjusted p value; Direction, indicates if the gene is up- or down-regulated with respect to the BrM group.
DOI: 10.6084/m9.figshare.29060724.v1
title: Additional file 5 of Genomic and immune profiling of breast cancer brain metastases

description: Supplementary Material 5. Differentially expressed genes in matched ECT-BrM specimens. Differentially expressed genes (DEGs) in matched FFPE ECT vs FFPE BrM (n = 8 patients), where log2 fold changes greater than 1 represent higher expression in BrM. DEGs are defined by having an adjusted p-value less than 0.05 and the table includes the top 50 up-regulated and top 50 down-regulated DEGs, sorted by unadjusted p-value. Column names include: Gene symbol, HUGO gene symbol; Base mean, mean of the normalized counts divided by size factors over all samples; Log2 Fold Change, log2 fold change in gene expression; Log2 Fold Change SE, standard error of the log2 fold change; Wald test statistic; P, unadjusted Wald test p value; Adjusted P, FDR adjusted p value; Direction, indicates if the gene is up- or down-regulated with respect to the BrM group.
DOI: 10.6084/m9.figshare.29060727
title: Additional file 6 of Genomic and immune profiling of breast cancer brain metastases

description: Supplementary Material 6. Gene set enrichment analysis results based on HALLMARK pathways in matched ECT-BrM specimens. Results of gene set enrichment analysis (GSEA) based on HALLMARK pathways in matched FFPE ECT vs FFPE BrM (n = 8 patients), ranked by unadjusted p value. Column names include: Pathway, unique pathway identifier; P, unadjusted enrichment p value; Adjusted P, FDR adjusted p value; ES, enrichment score; NES, enrichment score normalized to mean enrichment of random samples of the same size; Number of genes, number of genes analyzed in the pathway; leadingEdge, HUGO gene symbols of leading-edge genes.
DOI: 10.6084/m9.figshare.29060727.v1
title: Additional file 6 of Genomic and immune profiling of breast cancer brain metastases

description: Supplementary Material 6. Gene set enrichment analysis results based on HALLMARK pathways in matched ECT-BrM specimens. Results of gene set enrichment analysis (GSEA) based on HALLMARK pathways in matched FFPE ECT vs FFPE BrM (n = 8 patients), ranked by unadjusted p value. Column names include: Pathway, unique pathway identifier; P, unadjusted enrichment p value; Adjusted P, FDR adjusted p value; ES, enrichment score; NES, enrichment score normalized to mean enrichment of random samples of the same size; Number of genes, number of genes analyzed in the pathway; leadingEdge, HUGO gene symbols of leading-edge genes.
DOI: 10.6084/m9.figshare.29060730
title: Additional file 7 of Genomic and immune profiling of breast cancer brain metastases

description: Supplementary Material 7. Gene set enrichment analysis results based on pathways of interest in matched ECT-BrM specimens. Results of gene set enrichment analysis (GSEA) based on selected pathways of interest (MNK, CDK, DNA damage repair, immune signaling, oxidative phosphorylation) from HALLMARK, KEGG, and GO gene lists and literature were compared in matched FFPE ECT-FFPE BrM specimens (n = 8 patients), ranked by unadjusted p value. Column names include: Pathway type, biologically-relevant pathway group name; Pathway, unique pathway identifier; P, unadjusted enrichment p value; Adjusted P, FDR adjusted p value; ES, enrichment score; NES, enrichment score normalized to mean enrichment of random samples of the same size; Number of genes, number of genes analyzed in the pathway; leadingEdge, HUGO gene symbols of leading-edge genes.
DOI: 10.6084/m9.figshare.29060730.v1
title: Additional file 7 of Genomic and immune profiling of breast cancer brain metastases

description: Supplementary Material 7. Gene set enrichment analysis results based on pathways of interest in matched ECT-BrM specimens. Results of gene set enrichment analysis (GSEA) based on selected pathways of interest (MNK, CDK, DNA damage repair, immune signaling, oxidative phosphorylation) from HALLMARK, KEGG, and GO gene lists and literature were compared in matched FFPE ECT-FFPE BrM specimens (n = 8 patients), ranked by unadjusted p value. Column names include: Pathway type, biologically-relevant pathway group name; Pathway, unique pathway identifier; P, unadjusted enrichment p value; Adjusted P, FDR adjusted p value; ES, enrichment score; NES, enrichment score normalized to mean enrichment of random samples of the same size; Number of genes, number of genes analyzed in the pathway; leadingEdge, HUGO gene symbols of leading-edge genes.
DOI: 10.6084/m9.figshare.29060736
title: Additional file 2 of QRICH1 regulates ATF6 transcription to affect pathological cardiac hypertrophy progression

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.29060736.v1
title: Additional file 2 of QRICH1 regulates ATF6 transcription to affect pathological cardiac hypertrophy progression

description: Supplementary Material 2.
DOI: 10.15468/dl.skxrnr
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (India, China, Myanmar, Viet Nam, Cambodia, Indonesia, Nepal, Philippines, Malaysia, Chinese Taipei, Bangladesh, Lao People’s Democratic Republic, Thailand, Bhutan)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Parkinsonia Plum. ex L."
 ]
}

 The dataset includes 157 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029246-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b7m5g3
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-87.75713 35.74366,-77.68886 35.74366,-77.68886 39.39482,-87.75713 39.39482,-87.75713 35.74366))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Parthenium integrifolium L."
 ]
}

 The dataset includes 115 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029247-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.