cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8srhww
title: Occurrence Download

description: A dataset containing 2963 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coptodon rendalli (Boulenger, 1897))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2963 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015180-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5k7vh6
title: Occurrence Download

description: A dataset containing 4482 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Iguana iguana (Linnaeus, 1758)",
 "Year 2000-2024"
 ]
}

 The dataset includes 4482 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015181-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnmvv7
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Papyrocranus afer (Günther, 1868))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 219 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015182-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10362060
title: LC-MS/MS, PSM and BLG properties data from "Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins"

description: This dataset contains the data analyzed in:

Rodriguez Palomo I, Nair B, Chang Y, Dartigues B, Dekker K, Mackie M, Evans M, Macleod R, Olsen JV, Collins MJ. (2023)  "Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins"

It contains the following data:



raw_files.zip Thermo RAW files for the 0, 4 and 128 days samples

benchmark_results.zip PSMs data from the analysis of the RAW files



Data from runs in Mascot, Fragpipe, pFind, Metamorpheus, MaxQuant and DeNovoGUI

Parameters and workflow files for MaxQuant and Fragpipe



bovin_blg_prop.zip BLG properties files: amyloid formation, 3D structure and solvent accessibility

benchmark_table.csv Table with runs settings for benchmarking

parameters_table.xlsx Spreadsheet with software parameters, derived from files used to run each software
DOI: 10.5281/zenodo.10362061
title: LC-MS/MS and PSM data from "Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins"

description: This dataset contains the data analyzed in:
Rodriguez Palomo I, Nair B, Chang Y, Dartigues B, Dekker K, Mackie M, Evans M, Macleod R, Olsen JV, Collins MJ. (2023)  "Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins"
It contains the following data:

raw_files.zip Thermo RAW files for the 0, 4 and 128 days samples
benchmark_results.zip PSMs data from the analysis of the RAW files

Data from runs in Mascot, Fragpipe, pFind, Metamorpheus, MaxQuant and DeNovoGUI
Parameters and workflow files for MaxQuant and Fragpipe
DOI: 10.5281/zenodo.13785293
title: LC-MS/MS, PSM and BLG properties data from "Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins"

description: This dataset contains the data analyzed in:

Rodriguez Palomo I, Nair B, Chang Y, Dartigues B, Dekker K, Mackie M, Evans M, Macleod R, Olsen JV, Collins MJ. (2023)  "Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins"

It contains the following data:



raw_files.zip Thermo RAW files for the 0, 4 and 128 days samples

benchmark_results.zip PSMs data from the analysis of the RAW files



Data from runs in Mascot, Fragpipe, pFind, Metamorpheus, MaxQuant and DeNovoGUI

Parameters and workflow files for MaxQuant and Fragpipe



bovin_blg_prop.zip BLG properties files: amyloid formation, 3D structure and solvent accessibility

benchmark_table.csv Table with runs settings for benchmarking

parameters_table.xlsx Spreadsheet with software parameters, derived from files used to run each software
DOI: 10.5281/zenodo.14165496
title: LC-MS/MS, PSM and BLG properties data from "Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins"

description: This dataset contains the data analyzed in:

Rodriguez Palomo I, Nair B, Chang Y, Dartigues B, Dekker K, Mackie M, Evans M, Macleod R, Olsen JV, Collins MJ. (2023)  "Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins"

It contains the following data:



raw_files.zip Thermo RAW files for the 0, 4 and 128 days samples

benchmark_results.zip PSMs data from the analysis of the RAW files



Data from runs in Mascot, Fragpipe, pFind, Metamorpheus, MaxQuant and DeNovoGUI

Parameters and workflow files for MaxQuant and Fragpipe



bovin_blg_prop.zip BLG properties files: amyloid formation, 3D structure and solvent accessibility

benchmark_table.csv Table with runs settings for benchmarking

parameters_table.xlsx Spreadsheet with software parameters, derived from files used to run each software
DOI: 10.15468/dl.pqr9t2
title: Occurrence Download

description: A dataset containing 642 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Labeobarbus altianalis (Boulenger, 1900))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 642 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015183-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88nvjx
title: Occurrence Download

description: A dataset containing 164281 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "Issue is one of (Zero coordinate, Coordinate out of range, Coordinate invalid, Coordinate rounded, Geodetic datum invalid, Coordinate reprojected, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate accuracy invalid, Coordinate precision invalid, Coordinate precision/uncertainty mismatch, Footprint SRS invalid, Footprint WKT mismatch, Footprint WKT invalid, Country coordinate mismatch, Country mismatch, Country invalid, Country derived from coordinates, Continent coordinate mismatch, Continent country mismatch, Continent invalid, Continent derived from country, Continent derived from coordinates, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Recorded date mismatch, Recorded date invalid, Recorded date unlikely, Taxon match fuzzy, Taxon match higher rank, Taxon match aggregate, The scientific name ID was not used in backbone matching, The taxon concept ID was not used in backbone matching, The taxon ID was not used in backbone matching, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, The scientific name differs on the record from that found in the checklist, Taxon match none, The backbone match found using the taxon IDs differs from what would be found if using the scientific names, Depth not metric, Depth unlikely, Depth min max swapped, Depth non numeric, Elevation unlikely, Elevation min max swapped, Elevation not metric, Elevation non numeric, Modified date invalid, Modified date unlikely, Identified date unlikely, Identified date invalid, Basis of record invalid, Type status invalid, Multimedia date invalid, Multimedia URI invalid, References URI invalid, Error during interpretation, Individual count invalid, Individual count conflicts with occurrence status, Occurrence status unparsable, Occurrence status inferred from individual count, ccurrence status inferred from basis of record, Georeferenced date unlikely, Georeferenced date invalid, Ambiguous institution, Ambiguous collection, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch, Possibly on loan, Different owner institution)",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus impatiens Cresson, 1863",
 "Year 2000-2024"
 ]
}

 The dataset includes 164281 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015078-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b3tc7q
title: Occurrence Download

description: A dataset containing 1092 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Caracterización y estructura de la ictiofauna de arrecifes rocosos y coralinos en Punta Carrizal, Colima, México para fines de inventario y conservación de la diversidad animal"
 ]
}

 The dataset includes 1092 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015184-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnx4bd
title: Occurrence Download

description: A dataset containing 7060697 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Occurrence evidence",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is Geodetic datum assumed WGS84"
 ]
}

 The dataset includes 7060697 records from 1079 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015030-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9dzy8
title: Occurrence Download

description: A dataset listing the 10475 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is EOD – eBird Observation Dataset"
 ]
}

 The dataset's 10475 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197123-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yeqybz
title: Occurrence Download

description: A dataset containing 3619 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mazama americana (Erxleben, 1777)"
 ]
}

 The dataset includes 3619 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008179-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djg2ib
title: Occurrence Download

description: A dataset containing 989859 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Guatemala"
 ]
}

 The dataset includes 989859 records from 740 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008074-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zzry6
title: Occurrence Download

description: A dataset containing 1771 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Russian Federation",
 "OccurrenceStatus is Present",
 "TaxonKey is Carex pseudocyperus L.",
 "Year 1960-2024"
 ]
}

 The dataset includes 1771 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058100-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7dckf3
title: Occurrence Download

description: A dataset containing 10729 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sesamum indicum L."
 ]
}

 The dataset includes 10729 records from 304 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197121-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zsllij
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Sporolithon tenue R.G.Bahia et al.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008179-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m6rglh
title: Occurrence Download

description: A dataset containing 46262 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "TaxonKey is Pinus halepensis Mill.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 46262 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008074-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.spqn7q
title: Occurrence Download

description: A dataset containing 813 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agave scabra Ortega"
 ]
}

 The dataset includes 813 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007432-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hnksyv
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Uganda",
 "TaxonKey is Malaconotus lagdeni (Sharpe, 1884)"
 ]
}

 The dataset includes 74 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008179-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eropbw
title: Occurrence Download

description: A dataset containing 2590 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cecropia peltata L."
 ]
}

 The dataset includes 2590 records from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008074-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qi9nor
title: Occurrence Download

description: A dataset containing 737 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dreissena bugensis (Andrusov, 1897)"
 ]
}

 The dataset includes 737 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031872-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.43sdxa
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Chapter 7: Linnaean Plant Names and their Types (part R)"
 ]
}

 The dataset includes 230 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053545-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h72ecq
title: Occurrence Download

description: A dataset containing 5376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Ensifera ensifera (Boissonneau, 1840)"
 ]
}

 The dataset includes 5376 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061544-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8jh3sv
title: Occurrence Download

description: A dataset containing 1221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 {
 "or" : [
 "Locality is Arkansas Post National Memorial",
 "Locality is Arkansas Post National Memorial, 70 yds SW of sewage lagoon",
 "Locality is Arkansas Post National Memorial, Old Post Road, Gillett, AR, Uni",
 "Locality is Arkansas Post National Memorial. Restored prairie",
 "Locality is Arkansas Post National Memorial; 34.0166 -91.3451",
 "Locality is Arkansas Post National memorial, Gillett US-AR 34.02500, -91.35212"
 ]
 },
 "TaxonKey is Insecta"
 ]
}

 The dataset includes 1221 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007427-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8373fd
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Ecuador",
 "TaxonKey is Nectandra crassiloba Rohwer"
 ]
}

 The dataset includes 43 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061543-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j733rc
title: Occurrence Download

description: A dataset containing 4806 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Argusianus argus (Linnaeus, 1766)"
 ]
}

 The dataset includes 4806 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088161-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.serx98
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium hylocomum Üksip"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244664-230224095556074/datasets/export for details.
DOI: 10.15468/dl.s8tfta
title: Occurrence Download

description: A dataset containing 36515 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxon occurrence data for the FungalRoot database"
 ]
}

 The dataset includes 36515 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0210825-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swvart
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glycyrrhiza triphylla Fisch. & C.A.Mey."
 ]
}

 The dataset includes 193 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230632-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n77m7q
title: Occurrence Download

description: A dataset containing 161743 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Hatikka.fi observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 161743 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217261-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kejbg3
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "DatasetKey is Censo aéreo de poblaciones de borrego cimarrón (Ovis canadensis cremnobates) en Baja California, México"
 ]
}

 The dataset includes 154 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230658-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z855ta
title: Occurrence Download

description: A dataset containing 3485 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Braya humilis (C.A.Mey.) B.L.Rob."
 ]
}

 The dataset includes 3485 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046561-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76fbae
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Projet BiodiverCité-Données opportunistes Faune récoltées lors des prospections terrains",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 43 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217297-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6d43c5
title: Occurrence Download

description: A dataset containing 296 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glyptopleura setulosa A.Gray"
 ]
}

 The dataset includes 296 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230663-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3nbkvg
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Système d'Information sur la Nature et les Paysages d'Ile de France - Données du naturaliste Jean-luc Saint-marc provenant de la base de donnée du SINP Île-de-France CETTIA",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217278-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.