cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19294352.v2
title: Data of Flow cytometry

description: Apoptosis in retinal cell layers exposed to Lead<br>
DOI: 10.6084/m9.figshare.20745631
title: Supplementary Material for: Cost-Effectiveness of Low-Dose Compared to Standard-Dose Alteplase for Acute Ischemic Stroke in China: A Within-Trial Economic Evaluation of the ENCHANTED Study

description: <b><i>Introduction:</i></b> The Enhanced Control of Hypertension and Thrombolysis Stroke Study (ENCHANTED) showed that a low-dose alteplase was safe but not clearly non-inferior to standard-dose alteplase in acute ischemic stroke (AIS). Given the significant cost of this medicine, we undertook a cost-effectiveness analysis to determine the probability that low-dose is cost-effective relative to standard-dose alteplase in China. <b><i>Methods:</i></b> For ENCHANTED participants in China with available health cost data, cost-effectiveness and cost-utility analyses were undertaken in which death or disability (modified Rankin scale scores 2–6) at 90 days and quality-adjusted life-years (QALYs) were used as outcome measures, respectively. There was adherence to standard guidelines for health economic evaluations alongside non-inferiority trials and according to a health-care payer’s perspective. The equivalence margin for cost and effectiveness was set at USD 691 and −0.025 QALYs, respectively, for the base-case analysis. Probabilistic sensitivity analyses were used to evaluate the probability of low-dose alteplase being non-inferior. <b><i>Results:</i></b> While the mean cost of alteplase was lower in the low-dose group (USD 1,569 vs. USD 2,154 in the standard-dose group), the total cost was USD 56 (95% confidence interval [CI]: −1,000–1,113) higher compared to the standard-dose group due to higher hospitalization costs in the low-dose group. There were 462 (95% CI: 415–509) and 410 (95% CI: 363–457) patients with death or disability per 1,000 patients in the low-dose and standard-dose groups, respectively. The low-dose group had marginally lower (0.008, 95% CI: −0.016–0.001) QALYs compared to their standard-dose counterparts. The low-dose group was found to have an 88% probability of being non-inferior based on cost-effectiveness versus the standard-dose group. <b><i>Conclusions:</i></b> This health economic evaluation alongside the ENCHANTED indicates that the use of low-dose alteplase does not save overall healthcare costs nor lead to a gain in QALYs in the management of Chinese patients with AIS compared to the use of standard dose. There is little justification on economic grounds to shift from standard-of-care thrombolysis in AIS.
DOI: 10.5066/f7br8rgq
title: CONUS 7-day eMODIS NDVI - smoothed
DOI: 10.5281/zenodo.2639759
title: X-ray dataset for "Illumination improvements for high-resolution ptychography"

description: We provide X-ray ptychography datasets used for publication "Illumination improvements for high-resolution ptychography"

The provided datasets are stored in Matlab MAT files and they contain:<br>
  measured_intensities    uint16        - photon counts measured by a 2D hybrid-pixel detector in every scanning position    <br>
  probe_positions            double       - relative probe position already converted to units of the real-space pixel shift<br>
  detector_mask              logical        - mask which is true for good pixel and false for ignored (bad or missing) pixels<br>
  initial_probe                  complex double - initial estimate of the reconstruction probe

The pixel size for the FCC_particle datasets is 27.43nm and for the siemens_star datasets it is 9.97x14.16nm
DOI: 10.5281/zenodo.6798859
title: Dataset of "Effect of impact velocity and angle on deformational heating and post-impact temperature"

description: This dataset contains input files for iSALE-3D and Data Set for the paper "Effect of impact velocity and angle on deformational heating and post-impact temperature" by S. Wakita et al.<br> <br> Please note that usage of the iSALE-3D code is restricted to those who have contributed to the development of iSALE-2D, and iSALE-2D is distributed on a case-by-case basis to academic users in the impact community. It requires a registration from the iSALE webpage (https://isale-code.github.io/) and usage of iSALE-2D and computational requirements are also shown in there. Please also note that pySALEPlot in the current stable release of iSALE-2D (Dellen) would not work for the data from iSALE-3D.
DOI: 10.5281/zenodo.6906378
title: The efficacy of wildlife fences for keeping reindeer outside a chronic wasting disease risk area

description: Data to "The efficacy of wildlife fences for keeping reindeer outside a chronic wasting disease risk area" accepted in Ecological Solutions and Evidence
DOI: 10.6084/m9.figshare.13077161.v1
title: DATASET HOS 2020.pdf

description: The dataset includes analysis of key policies and reforms that were promoted in the aftermath of the 2011 protests in Israel. The analysis describes and categorizes these reforms according to pre-defined criteria. The findings illustrate how certain reforms can be tied to the demands of the protesters, and how government responded to these demands by introducing a range of policies and regulation designed to tackle the housing crisis.The dataset also features a list of interviewees whose input was instrumental in conducting the analysis of housing and planning policies.
DOI: 10.17632/fbsdj87gjg.2
title: ETCCDI Metric with an acceleration of ice sheets melting during the 21st century

description: The data consist of 15 annual extreme indices on the entire world and given in a geo-tiff raster datasets. These jndices depend on daily precipitation or daily temperature simulated by the Global Circulation Model (GCM) IPSL-CM5A-LR used in the Coupled Model Intercomparison Project Phase 5 (CMIP5). A historical run and seven different climatic scenarios are simulated between 1951 and 2006 (historical) and between 2006 and 2099 (climatic scenarios). The first climatic scenario is the RCP8.5 baseline scenario from The Intergovernmental Panel on Climate Change (IPCC) corresponds to a global temperature increase of ~5°C with respect to the pre-industrial level. The six other scenarios are superimposed on the RCP8.5 scenarios with an input of freshwater from Greenland and/or West-Antarctica added in the ocean. The amount of added freshwater corresponds to 1.5 or 3m of sea level rise. 
The results are seven annual time series of the 15 indeces across the world with a 0.5°X0.5° resolution (~50x50 km at the equator) and an historical run from 1951 to 2005. For each grid cell, we have seven different annual evolutions of each index by the end of 21st century.
RCP8.5 scenario corresponds to the entire period from 1951 to 2099. For the other scenarios, it is only from 2006 to 2099. The period from 1951 to 2099 corresponds to the historical run (rcp8.5).
DOI: 10.4121/uuid:e06ca666-90e2-4a2c-a1d0-4c39f815b04d
title: Pan-European data sets of coastal flood probability of occurrence under present and future climate

description: GIS-compatible files containing data related to the probablity of coastal floods occurring in Europe under present and future climate. Includes gridded (GeoTIFF) datasets of coastal flood extents (in two variants, with or without flood protection) and water depths. Additionally includes extreme water level and storm surge heights estimates in ESRI Shapefile format. Based upon SMHI-RCA4-EC-EARTH regional climate simulation (EURO-CORDEX)
DOI: 10.5066/p9i49dex
title: Sedimentary geochemistry of a deepwater slope environment of southern Lake Tanganyika

description: This dataset contains geochemical data (Total Inorganic Carbon, Total Organic Carbon, Total Nitrogen, ?13C of Organic Carbon, Hydrogen Index, Oxygen Index, Zirconium/Aluminum, and Magnetic Susceptibility) for sediments from one short (~1 m) core collected in 420 m of water in southern Lake Tanganyika, Tanzania.
DOI: 10.5281/zenodo.6640042
title: Genomic resequencing data in the northern bottlenose whale, Hyperoodon ampullatus

description: This dataset contains resequencing data used in our northern bottlenose whale genomics research. In this project, we analyzed population structure, demographic history, and signatures of selection. Source code for genomic analyses is available at github.com/edegreef/NBW-resequencing. Data uploaded here contain: <strong>NBW_all_variantcalls.vcf.gz</strong> - All variant calls, including both indels and SNPs <strong>NBW_SNPS_unfiltered.vcf.gz </strong>- Unfiltered SNPs <strong>NBW_SNPS_filtered_population_analyses.vcf.gz</strong> - Filtered SNPs for population analyses. Filtered for quality (removed qual &lt; 20, mq &lt; 30, qd &lt; 2, missingness &gt; 0.4), biallelic sites, autosomes, removed structural variants, minor allele count 2, minimum scaffold length 50kb, and sites in Hardy-Weinberg Equilibrium <strong>NBW_SNPS_filtered_pruned_population_analyses.vcf.gz</strong> - Additionally LD-pruned with r2 &gt; 0.5 <strong>NBW_SNPS_filtered_demography_analyses.vcf.gz</strong> - Filtered SNPs for demography analyses. Filtered for quality, biallelic sites, autosomes, removed structural variants, minimum scaffold length 100kb, and sites in Hardy-Weinberg Equilibrium <strong>NBW_SNPS_filtered_imputed_haplotype_analyses.vcf.gz</strong> - Filtered and imputed SNPs for haplotype analyses. Filtered for quality, biallelic sites, autosomes, removed structural variants, max-missingness 0.1, minor allele count 2, minimum scaffold length 50kb. <strong>NBW_SNPS_filtered_Xchr.vcf.gz</strong> & <strong>NBW_SNPS_filtered_Ychr_males.vcf.gz</strong> - Filtered SNPs on X & Y chr. Filtered for quality, non-biallelic sites, removed structural variants, minor allele count 2, minimum scaffold length 50kb.
DOI: 10.5281/zenodo.997406
title: Spherical harmonic models of planetary topography

description: This archive contains spherical-harmonic shape models of the Moon, Venus, and Mars that were presented in <em>Wieczorek </em>(2015). The individual files can be downloaded separately here: MarsTopo2600.shape.gz MoonTopo2600p.shape.gz VenusTopo719.shape.gz
description: {"references": ["Wieczorek, M. A., Gravity and topography of the terrestrial planets, Treatise on Geophysics, 10, 153-193, doi:10.1016/B978-0-444-53802-4.00169-X, 2015."]}
DOI: 10.6084/m9.figshare.20347410
title: R-scripts used in Amoussou et al. "Finding the best match: a ranking procedure of fish species combinations for polyculture development"

description: R scripts used in Amoussou et al. "Finding the best match: a ranking procedure of fish species combinations for polyculture development".
DOI: 10.6084/m9.figshare.20552745.v1
title: Statistical reconstruction of European winter snowfall in reanalysis and climate models based on air temperature and total precipitation

description: Data and scripts to reproduce research described in "Statistical reconstruction of European winter snowfall in reanalysis and climate models based on air temperature and total precipitation" by Flavio Pons and Davide Faranda
DOI: 10.5281/zenodo.6336691
title: MD simulation of POPC bilayer with CHARMM36 force field. Full hydration 44 w/l.

description: MD simulation of POPC (1-palmitoyl-2-oleoyl-phosphatidylcholine) bilayer with CHARMM36 force field. Full hydration 44 w/l. Dataset contains simulation files including trajectories (.xtc) (original production.xtc and equilibrated and centered centered-40-500ns.xtc). System: POPC bilayer in water Number of lipids: 200 (100/leaflet) Number of waters: 8880 Simulation time: 500 ns Sampling rate: every 10 ps Simulation engine: GROMACS 2019.5 Temperature: 300 K
DOI: 10.5281/zenodo.6786329
title: Imaging and phase-locking of non-linear spin waves

description: All primary data and simulation scripts used in the manuscript and SI
DOI: 10.5523/bris.3msx2960uay8v225eh6s1tg4ka
title: Dataset for publication TiSe2 phase diagram

description: Dataset for publication entitled "Reduced critical pressure of the charge density wave in TiSe2 under non-hydrostatic conditions"
DOI: 10.17632/nchppjr9nr.1
title: LCSC VOC 2020 NW Fire Dataset

description: Volatile organic compound (VOC) measurements collected via sorbent tubes and analyzed via thermal desorption-gas chromatography-mass spectrometry (TD-GC-MS) in southeastern Washington and northcentral Idaho wildfire smoke.  The two fires sampled were Chief Timothy Fire and Whitetail Loop Fire, in August and September 2020, with 20 samples and over 100 VOCs.  The goal of observations is to relate VOC levels to human health risk.
DOI: 10.5066/f7s181ph
title: Geochemical and geophysical data for wells in the Fruitvale and Rosedale Ranch oil and gas fields, Kern County, California, USA

description: The U.S. Geological Survey (USGS) in cooperation with the California State Water Resources Control Board compiled and analyzed data for the purpose of mapping groundwater salinity in selected oil and gas fields in California. The data for the Fruitvale and Rosedale Ranch oil fields include well construction data, digitized borehole geophysical data, geochemical analyses of water samples from oil and gas wells and groundwater wells, geological formation depths, and the groundwater total dissolved solids (TDS) calculations used in an accompanying manuscript. These data have been compiled from many sources and span several decades. The well construction data includes attributes such as the date drilling began (spud date), well depth, the depth of top producing perforation, and borehole orientation. These data have been in archived scanned pages in raster format on the Division of Oil, Gas, and Geothermal Resources (DOGGR) website. Similarly, the borehole geophysical data, measured by oil companies, has been archived in raster format. This project has converted the borehole geophysical data from selected oil and gas wells into a computer readable numerical format. The geochemical analyses have also been archived in scanned formats, but now have been compiled into numerical datasets in additional data releases by Metzger and others (2018) and Gans and others (2018). All of the data compiled and analyzed are part of the California State Water Resources Control Board's Program of Regional Monitoring of Water Quality in Areas of Oil and Gas Production and the USGS California Oil, Gas, and Groundwater (COGG) program.
DOI: 10.5281/zenodo.6337813
title: MD simulation of POPC bilayer with CHARMM36 force field, 200 mM CaCl2

description: MD simulation of POPC bilayer with CHARMM36 force field, 200 mM CaCl<sub>2</sub> Dataset contains simulation files including centered trajectory files. For the ease of the upload, trajectory files (.xtc) are divided to 100ns pieces (Cacl200mM_x-x.xtc) System: POPC bilayer in water Number of lipids: 200 (100/leaflet) Number of waters: 8880 Salt: CaCl<sub>2</sub> Concentration: 200 mM Number of cations: 32 Simulation time: 1000 ns Simulation engine: GROMACS 2019.5 Temperature: 300 K
DOI: 10.5281/zenodo.6877625
title: Figure Data for the paper "From Motor Control to Team Play in Simulated Humanoid Football"

description: <strong>Data Release for Article: <em>From Motor Control to Team Play in Simulated Humanoid Football</em></strong> This package releases a set of Python notebooks each reproducing a quantitative<br> figure featured in the research article "From Motor Control to Team Play in<br> Simulated Humanoid Football". <strong>Usage</strong> The set of notebooks can be uploaded to and executed using the<br> Colab runtime service. Alternatively, these notebook files can be executed using a<br> Jupyter local runtime with the following commands using<br> <code>virtualenv</code>. <pre><code>cd dm_soccer virtualenv venv source venv/bin/activate pip install -r requirements.txt pip install notebook jupyter notebook </code></pre> <strong>Dependencies</strong> All Python notebooks are tested against Python <code>3.7</code> as well as the versioned<br> dependencies specified in <code>requirements.txt</code>. All dependencies are satisfied by<br> Colab as of August 2022 and can be<br> installed locally with <code>pip install -r requirements.txt</code> if using a Jupyter<br> local runtime. <strong>License and disclaimer</strong> Copyright 2022 DeepMind Technologies Limited All software is licensed under the Apache License, Version 2.0 (Apache 2.0); you<br> may not use this file except in compliance with the Apache 2.0 license. You may<br> obtain a copy of the Apache 2.0 license at:<br> https://www.apache.org/licenses/LICENSE-2.0 All other materials are licensed under the Creative Commons Attribution 4.0<br> International License (CC-BY). You may obtain a copy of the CC-BY license at:<br> https://creativecommons.org/licenses/by/4.0/legalcode Unless required by applicable law or agreed to in writing, all software and<br> materials distributed here under the Apache 2.0 or CC-BY licenses are<br> distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,<br> either express or implied. See the licenses for the specific language governing<br> permissions and limitations under those licenses. This is not an official Google product.
DOI: 10.6084/m9.figshare.19352474.v2
title: ARRIVE checklist for “In vitro and in vivo study: Ethanolic extract leaves of Azadirachta indica Juss. variant of Indonesia and Philippines suppresses tumor growth of hepatocellular carcinoma by inhibiting STAT3-IL-6 signaling”

description: Dataset of ARRIVE checklist for “<i>In vitro</i> and <i>in vivo</i> study: Ethanolic extract leaves of <i>Azadirachta indica</i> Juss. variant of Indonesia and Philippines suppresses tumor growth of hepatocellular carcinoma by inhibiting STAT3-IL-6 signaling”
DOI: 10.6084/m9.figshare.20347248
title: The trial protocols of the test cases used in Amoussou et al. "Finding the best match: a ranking procedure of fish species combinations for polyculture development"

description: The file includes the trial protocols used in "Finding the best match: a ranking procedure of fish species combinations for polyculture development". <br>
DOI: 10.6084/m9.figshare.20347296
title: Datasets from Amoussou et al. "Finding the best match: a ranking procedure of fish species combinations for polyculture development"

description: The file includes the datasets and treatment steps used in Amoussou et al. "Finding the best match: a ranking procedure of fish species combinations for polyculture development"
DOI: 10.6084/m9.figshare.20347440
title: The results of the correlation tests performed in Amoussou et al. "Finding the best match: a ranking procedure of fish species combinations for polyculture development"

description: The file shows the results of the correlation tests performed in Amoussou et al. "Finding the best match: a ranking procedure of fish species combinations for polyculture development".
DOI: 10.14768/11f03207-0fc7-4784-bbdb-eecae34e6c32
title: Comparisons of the simulated martian HDO cycle with the upgraded LMD Mars GCM

description: We present here simulations of the HDO cycle on Mars, using an updated version of the LMD Mars GCM. This is a follow-up from Rossi et al. (2021), this time including more physical processes: microphysics of cloud formation, radiatively active clouds, effect of kinetics during fractionnation by condensation. The simulations pertain to two dust scenarios representative of martian years 34 and 35. There are different types of files: * yearly file (MY34 and 35 combined) representing column integrated quantities interpolated at local time of 14h, zonally averaged, as a function of latitude and solar longitude * yearly file (MY34 and 35 combined) representing quantities interpolated at local time of 14h at altitudes of 30 and 60~km, zonally averaged, as a function of latitude and solar longitude * yearly file (MY34 and 35 separately) representing quantities interpolated at local time of 14h, zonally averaged, as a function of altitude above the areoid and for solar longitudes of 180, 200, 210, 260. * GCM outputs colocated to the coordinates of TGO/ACS-MIR observations (in altitude above areoid and time). * The data used from ACS-MIR, processed by Juan Alday (https://doi.org/10.1038/s41550-021-01389-x), reinterpolated vertically and stored in a netcdf
DOI: 10.17632/268ww2m4j3.1
title: human NKR-P1:LLT1 SEC-SAXS raw data

description: The file contains SEC-SAXS raw data (small angle X-ray scattering) of human NKR-P1 and LLT1 in equimolar mixture. The data were used for OLIGOMER analysis, in order to study complexation capability of both proteins, as described in: Blaha et al., Structure of the human NK cell NKR-P1:LLT1 receptor:ligand complex reveals clustering in the immune synapse, Nat. Comm. 2022. Preprint available at Biorxiv (https://doi.org/10.1101/2021.06.16.448687).
DOI: 10.23728/fmi-b2share.9f230bd7553a40aeadafd400cedeba52
title: Data and code for the manuscript "Impacts of marine organic emissions on low level stratiform clouds – a large eddy simulator study" by Prank et al., submitted to ACP

description: This dataset consists of UCLALES-SALSA model output of the experiments presented in the manuscript "Impacts of marine organic emissions on low level stratiform clouds – a large eddy simulator study" by Prank et al. and the model code used for making these simulations. In these experiments the DYCOMS II field campaign conditions were simulated with varying marine emission fluxes of sea salt, primary organics and volatile organic compounds. REFERENCE TO THE PREPRINT: Prank, M., Tonttila, J., Ahola, J., Kokkola, H., Kühn, T., Romakkaniemi, S., and Raatikainen, T.: Impacts of marine organic emissions on low level stratiform clouds – a large eddy simulator study, Atmos. Chem. Phys. Discuss. [preprint], https://doi.org/10.5194/acp-2022-265, in review, 2022.
description: UCLALES-SALSA combines the widely used UCLA Large Eddy Simulator with a detailed aerosol-cloud microphysics model SALSA. The model includes various sea spray emission parameterizations and simulates isoprene and monoterpene fluxes from sea surface. Secondary organic aerosol formation is modelled using the Volatility Basis Set approach.
DOI: 10.25829/idiv.3506-p4c0mo
title: Global patterns of vascular plant alpha-diversity
DOI: 10.3886/e112871v1
title: Replication data for: The War on Poverty's Experiment in Public Medicine: Community Health Centers and the Mortality of Older Americans

description: This paper uses the rollout of the first Community Health Centers (CHCs) to study the longer-term health effects of increasing access to primary care. Within ten years, CHCs are associated with a reduction in age-adjusted mortality rates of 2 percent among those 50 and older. The implied 7 to 13 percent decrease in one-year mortality risk among beneficiaries amounts to 20 to 40 percent of the 1966 poor/non-poor mortality gap for this age group. Large effects for those 65 and older suggest that increased access to primary care has longer-term benefits, even for populations with near universal health insurance. (JEL H75, I12, I13, I18, I32, I38, J14)
DOI: 10.5281/zenodo.6339898
title: MD simulation of POPC bilayer with CHARMM36 force field, 500 mM CaCl2

description: MD simulation of POPC bilayer with CHARMM36 force field, 500 mM CaCl<sub>2</sub> Dataset contains simulation files including centered trajectory files. For the ease of the upload, trajectory files (.xtc) are divided to 100ns pieces (Cacl500mM_x-x.xtc) System: POPC bilayer in water Number of lipids: 200 (100/leaflet) Number of waters: 8880 Salt: CaCl<sub>2</sub> Concentration: 500 mM Number of cations: 80 Simulation time: 1000 ns Simulation engine: GROMACS 2019.5 Temperature: 300 K
DOI: 10.5281/zenodo.6341420
title: MD simulation of POPC bilayer with CHARMM36 force field, 100 mM CaCl2

description: MD simulation of POPC bilayer with CHARMM36 force field, 100 mM CaCl<sub>2</sub> Dataset contains simulation files including centered trajectory files. For the ease of the upload, trajectory files (.xtc) are divided to 100ns pieces (Cacl100mM_x-x.xtc) System: POPC bilayer in water Number of lipids: 200 (100/leaflet) Number of waters: 8880 Salt: CaCl<sub>2</sub> Concentration: 100 mM Number of cations: 16 Simulation time: 1000 ns Simulation engine: GROMACS 2019.5 Temperature: 300 K