cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25662612
title: Supplementary Material for: Evaluating Urine Cytology Slide Digitization Efficiency: A Comparative Study Using an Artificial Intelligence-Based Heuristic Scanning Simulation and Multiple-Z-Plane Scanning

description: Introduction: Digitizing cytology slides presents challenges because of their three-dimensional features and uneven cell distribution. While multi-Z-plane scan is a prevalent solution, its adoption in clinical digital cytopathology is hindered by prolonged scanning times, increased image file sizes, and the requirement for cytopathologists to review multiple Z-plane images.

Methods: This study presents heuristic scan as a novel solution, using an artificial intelligence (AI)-based approach specifically designed for cytology slide scanning as an alternative to the multi-Z-plane scan. Both the 21 Z-plane scan and the heuristic scan simulation methods were used on 52 urine cytology slides from three distinct cytopreparations (Cytospin, ThinPrep, and BD CytoRich™ (SurePath)), generating whole-slide images (WSIs) via the Leica Aperio AT2 digital scanner. The AI algorithm inferred the WSI from 21 Z-planes to quantitate the total number of suspicious for high-grade urothelial carcinoma or more severe cells (SHGUC+) cells. The heuristic scan simulation calculated the total numbers of SHGUC+ cells from the 21 Z-plane scan data. Performance metrics including SHGUC+ cell coverage rates (calculated by dividing the number of SHGUC+ cells identified in multiple Z-planes or heuristic scan simulation by the total SHGUC+ cells in the 21 Z-planes for each WSI), scanning time, and file size were analyzed to compare the performance of each scanning method. The heuristic scan's metrics were linearly estimated from the 21 Z-plane scan data. Additionally, AI-aided interpretations of WSIs with scant SHGUC+ cells followed The Paris System guidelines and were compared with original diagnoses.

Results: The heuristic scan achieved median SHGUC+ cell coverage rates similar to 5 Z-plane scans across three cytopreparations (0.78-0.91 vs. 0.75-0.88, P=0.451-0.578). Notably, it substantially reduced both scanning time (137.2-635.0 seconds vs. 332.6-1278.8 seconds, P&lt;0.05) and image file size (0.51-2.10 GB vs. 1.16-3.10 GB, P&lt;0.05). Importantly, the heuristic scan yielded higher rates of accurate AI-aided interpretations compared to the single Z-plane scan (62.5% vs. 37.5%).

Conclusion: We demonstrated that the heuristic scan offers a cost-effective alternative to the conventional multi-Z-plane scan in digital cytopathology. It achieves comparable SHGUC+ cell capture rates while reducing both scanning time and image file size, promising to aid digital urine cytology interpretations with a higher accuracy rate compared to the conventional single (optimal) plane scan. Further studies are needed to assess the integration of this new technology into compatible digital scanners for practical cytology slide scanning.
DOI: 10.6084/m9.figshare.25997230
title: Supplementary Material for: Long-term dynamics of serum α-MSH and α-MSH-binding immunoglobulins with a link to gut microbiota composition in patients with anorexia nervosa

description: Introduction. Immunoglobulins (Ig) reactive with α-melanocyte-stimulating hormone (α-MSH), an anorexigenic neuropeptide, are present in humans and were previously associated with eating disorders. In this longitudinal study involving patients with anorexia nervosa (AN), we determined whether α-MSH in serum is bound to IgG and analyzed long-term dynamics of both α-MSH peptide and α-MSH-reactive Ig in relation to changes in BMI and gut microbiota composition. Methods. The study included 64 adolescents with a restrictive form of AN, whose serum samples were collected at hospital admission, discharge, and during a 1-year follow-up visit, and 41 healthy controls, all females. Results. We found that in both study groups, approximately 40% of serum α-MSH was reversibly bound to IgG and that levels of α-MSH-reactive IgG, but not of α-MSH peptide in patients with AN were low at hospital admission, but recovered 1-year later. Total IgG levels were also low at admission. Moreover, BMI-standard deviation score (SDS) correlated positively with α-MSH IgG in both groups studied, but negatively with α-MSH peptide only in controls. Significant correlations between the abundance of specific bacterial taxa in the gut microbiota and α-MSH peptide and IgG levels were found in both study groups, but they were more frequent in controls. Conclusion/Discussion. We conclude that IgG in the blood plays a role as an α-MSH binding protein, whose characteristics are associated with BMI in both patients with AN and controls. Furthermore, the study suggests that low production of α-MSH-reactive IgG during the starvation phase in patients with AN may be related to altered gut microbiota composition.
DOI: 10.6084/m9.figshare.27088333
title: Supplementary Material for: Higher Platelet Count Mostly in Normal Range is Associated with First Episode of Peritonitis Risk in Incident Peritoneal Dialysis Patients

description: Background. Platelets play parts in infection and immune processes. However, the association between platelet count and the risk of peritoneal dialysis-associated peritonitis is unclear. 
Methods. This was a retrospective, observational, single-center cohort study. A Cox regression analysis was used to evaluate the independent association of platelet count with the occurrence of first PD-associated peritonitis. Models were adjusted for gender, age, BMI, cardiovascular disease, diabetes mellitus, white blood cell count, neutrophil-lymphocyte ratio, hemoglobin level, albumin level, potassium level, and anti-platelet medication usage. 
Results. A total of 2374 patients were enrolled in this study (59% men; mean age 47.40 ± 12.12). The average platelet count was 229.30±82.12 x 109/L. 467 (20%) patients suffered from PD-associated peritonitis at least once. In the multivariable model, the adjusted hazard ratios (HRs) for quartiles 2, 3 and 4 versus quartile 1 were 1.428 (95% CI 1.060-1.924, P=0.019), 1.663 (95% CI 1.240-2.229, P&lt;0.001) and 1.843 (95% CI 1.363-2.492, P&lt;0.001) with baseline data. A nonlinear relationship between platelet count and first PD-associated peritonitis was observed. Further, the association between platelet and first PD-associated peritonitis was significant in the patients with hypokalemia (P for interaction=0.040). 
Conclusion. In PD patients, elevated platelet counts were significantly associated with an increased risk of the first onset of PD-associated peritonitis.
DOI: 10.17894/ucph.fa813160-65d0-489f-8f4d-f9c728f44650
title: High resolution density data EG18-S6 ice core - 50 to 73 m depth
DOI: 10.18434/t46c7n
title: NIST Atomic Transition Probability Database

description: This database is updated daily.
DOI: 10.25318/1310037401-eng
title:  Persons with and without disabilities aged 15 years and over, by age group and sex, Canada, provinces and territories

description: Differences in the number and proportion of persons with and without disabilities, by age group and sex, Canada, provinces and territories.
DOI: 10.5281/zenodo.10446793
title: Whistler waves and two-stream instabilities at non-stationary quasi-perpendicular collisionless shocks
DOI: 10.5281/zenodo.11562122
title: How does plastic litter accumulate in submarine canyons?

description: The numerical simulation data of turbidity currents.
DOI: 10.5281/zenodo.13738307
title: Using variable-resolution grids to model precipitation from atmospheric rivers around the Greenland ice sheet

description: This dataset can be used to reproduce the figures created in Waling et al. 2024, "Using variable-resolution grids to model precipitation from atmospheric rivers around the Greenland ice sheet." Each figure has its own script which can be executed.
DOI: 10.6084/m9.figshare.25737534.v1
title: Dataset - Design of SARS-CoV-2 protein S peptides recognized by the most frequent HLA alleles in the Moroccan population using an immunoinformatics approach

description: This dataset comprises SARS-CoV-2 sequences of various variants, including wild-type and mutated sequences, obtained from strains isolated from Moroccan patients. The dataset was curated to investigate human genetic diversity and its influence on the immune response to COVID-19. Utilizing in silico methods, epitopes capable of eliciting an immune response were identified, with a focus on the most prevalent HLA-I and HLA-II alleles in the Moroccan population. The dataset includes predictions of peptide-binding affinities between these alleles and SARS-CoV-2 spike glycoprotein (S protein) peptides. These findings contribute to understanding host cell susceptibility and outcomes of SARS-CoV-2 infection, guiding further research on vaccination strategies.
DOI: 10.6084/m9.figshare.26413462
title: Revised dataset

description: Studying how DD in T cast varies across habitats and populations. Further studying how DD in fecundity and survival drive this variation.
DOI: 10.17190/amf/1832156
title: AmeriFlux FLUXNET-1F MX-Tes Tesopaco, secondary tropical dry forest

description: This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site MX-Tes Tesopaco, secondary tropical dry forest. This is the FLUXNET version of the carbon flux data for the site MX-Tes Tesopaco, secondary tropical dry forest produced by applying the standard ONEFlux (1F) software. Site Description - This tower was located in the "Ejido la Estrella" where the eddy covariance tower is located 7.5 km east of the town Rosario de Tesopaco, in southeastern Sonora, Mexico. The tower was positioned in the center of a homogeneous flat terrain at the foothills of the Madre Occidental. This ecosystem lies in a highly seasonal region under the influence of the North American Monsoon that brings about 70% of the rains from July to September. The site is dominated by leguminous trees. Some of the dominant species are Lysiloma divaricatum, Ipomoea arborescens, Acacia cochliacantha, Haematoxylum brasiletto, and Celtis reticulata. The mean basal area at the study site is 14.83 ± 3.3m2 ha-1, and the aboveground biomass is estimated to be 43.20±9.5Mgha-1. These values and the high counts of Acacia cochliacantha indicate that the area is a secondary forest with significant management activities in the past.
DOI: 10.18462/iir.icr.2015.0860
title: Investigation of a liquid desiccant system for air dehumidification working with an ionic liquid in a two-stage refrigeration system for cold stores.

description: Electrically-driven compression chillers are the commonly used technology for cooling and dehumidifying air. Open sorption systems are an alternative to conventional air dehumidification technology. The separation of the cooling of the air and the air dehumidification by a combination of a closed absorption chiller for cooling and a thermally-driven open sorption system for dehumidification bears the potential to reduce primary energy consumption because part of the heat rejected from the closed absorption refrigeration cycle can be used to drive the dehumidification cycle in a two-stage process. The desiccant must achieve a high vapour pressure depression at the available driving temperature level of the heat rejected from the closed absorption refrigeration system in order to reach a low absolute air humidity which is required for low temperature refrigeration in order to avoid frost. Ionic liquids may fulfill this and other requirements since to a certain extent the vapour liquid equilibrium can be designed according to the boundary conditions of the respective application. In the paper at hand, the experimental results of a liquid desiccant system for air dehumidification working with an ionic liquid designed for an application down to -20°C for cold stores are presented. The system under investigation has been built up at the TU Berlin. The experiments presented here focus on the dehumidification capacity of the system.
DOI: 10.3886/e157781v1
title: Data and Code for: Rebel on the Canal: Rebel on the Canal: Disrupted Trade Access and Social Conflict in China, 1650-1911

description: This paper examines the effects of the abandonment of China's Grand Canal --- the world's largest and oldest artificial waterway --- which served as a disruption to regional trade access. Using an original dataset covering 575 counties over 262 years, we show that the canal's abandonment contributed to the social turmoil that engulfed North China in the nineteenth century. Counties along the canal experienced an additional 117% increase in rebelliousness after the canal's closure relative to their non-canal counterparts. Our findings highlight the important role that continued access to trade routes plays in reducing conflict.
description: Counties in Zhili, Shandong, Henan, Anhui, Zhejiang, and Jiangsu provinces as of 1820. Smallest Geographic Unit: county
DOI: 10.5281/zenodo.10373288
title: Dataset: Uncovering Obscured Phonon Dynamics from Powder Inelastic Neutron Scattering using Machine Learning

description: Dataset of simulated and experimental spectra for the manuscript: Uncovering Obscured Phonon Dynamics from Powder Inelastic Neutron Scattering using Machine Learning. 

The data.zip contains all the simulated spectra and labels.

The dataset.zip contains the divided subsets for training, validation and testing purposes, as well as the experimental dataset.
DOI: 10.5281/zenodo.11474249
title: Global water security risk assessment

description: This dataset presents the results of the risk assessment for water security in 317 basins around the world. The shapefile GRDC_379_basins_from_mouth contains the results of this assessment from a upstream perspective, with information presented for the basin polygons. Meanwhile, the shapefile GRDC_379_Precipitationsheds_from_mouth shows the results from an upwind perspective, with results presented for the precipitationshed polygons of the basins. For more detail of this dataset see the paper Posada-Marín J.A., Salazar J. F., Rulli M. C., Wang-Erlandsson L., Jaramillo F. (2024). Upwind moisture supply increases risk to water security. Nature Water, In review.
DOI: 10.5281/zenodo.12920978
title: Scattering of dark pions in Sp(4) gauge theory - Data release

description: This release contains all data and metadata used to prepare the publication Scattering of dark pions in Sp(4) gauge theory [2405.06506]Further details are given in the file README.md.

YD and FZ have been supported the Austrian Science Fund research teams grant STRONG-DM (FG1). FZ has been supported by the STFC Grant No. ST/X000648/1. The computations have been performed on the Vienna Scientific Cluster (VSC4).
DOI: 10.5281/zenodo.7092058
title: High resolution solar irradiance variability climatology dataset part 2: classifications, supplementary data, and statistics

description: <strong>Dataset description</strong> High resolution surface solar irradiance series classification, cloud shadow and enhancement statistics, and satellite observations for studying intra-day surface solar irradiance variability. <strong>Part 2 of 2</strong> This dataset is the derived from the 1 Hz observational record of direct, diffuse, and global horizontal irradiance measured by the Baseline Surface Radiation Network station at Cabauw, the Netherlands. More information about the observational site Cabauw can be found at the Ruisdael Observatory website. <strong>Methodology</strong> Processing of data and its usage described in a manuscript ready for submission. Pre-print will be added as soon as it is available. Processing scripts will be published with GitHub-Zenodo, and added here as well. <strong>Dataset contents</strong> This dataset contains daily time series with the following data, from 2011-02 until 2020-12-31: Cloud shadow and cloud enhancement time series classifications (see methodology) CAMS McClear for clear-sky global horizontal irradiance (version 3.1) CAMS McClear input (aerosols, ozone, and total column water vapour) Solar elevation and azimuth angles (calculated using PySolar) Quality flags (non-official and optimized for 1-Hz, refer to BSRN at PANGAEA for official 1-minute quality flags) Cabauw observatory tower wind speed and direction Additional satellite data time series from 2014-01 until 2016-12: MSGCPP satellite data for an area over central Netherlands (CLAAS2 source) Post processed timeseries of cloud types over Cabauw derived from this MSGCPP satellite data Statistics files: cloud shadow and cloud enhancement event detection and event statistics based on the time series daily radiation statistics And finally, for all days there are quicklooks available that visualize the irradiance time series, classification, and if available satellite data.
description: Part of the Shedding Light On Cloud Shadows (SLOCS) project, funded by the Dutch Research Council (NWO), grant number VI.Vidi.192.068
DOI: 10.5281/zenodo.7093164
title: High resolution solar irradiance variability climatology dataset part 1: direct, diffuse, and global irradiance

description: <strong>Dataset paper</strong> See the official dataset description paper (preprint) over at Earth System Science Data. <strong>Dataset description</strong> High resolution surface solar irradiance observations from the Baseline Surface Radiation Network (BSRN) of Cabauw, the Netherlands. This dataset spans 10 years, <em>from 2011-02 until 2020-12-31</em>. This dataset is the preprocessed 1 Hz observational record of direct, diffuse, and global horizontal irradiance, which is the basis for the official BSRN 1-minute dataset published at PANGAEA. Please refer to the official dataset for detailed metadata, instrument information, quality control flags, the full radiation balance and more (1 minute resolution). More information about the observational site Cabauw can be found at the Ruisdael Observatory website, and more general information about BSRN is published on ESSD. <strong>Part 1 of 2</strong> This dataset is the basis for an analysis of surface solar irradiance variability, derived variables, supplementary meteorological data, and quicklooks, available in part 2 here: https://doi.org/10.5281/zenodo.7092058 <strong>Usage disclaimer</strong> While resampling this 1-Hz data to 1-minute, with the official BSRN quality flags, should reproduce an identical dataset to the official 1-minute BSRN dataset, this has not yet been validated for this version. When you require the most reliable version of the radiation measurements, where variability at a higher resolution than 1 minute is not of concern, please refer to the official BSRN dataset at PANGAEA.
DOI: 10.5285/bc71347d-298a-4df3-88b0-cb9a908db166
title: High resolution vector polylines of the Antarctic coastline - VERSION 7.5

description: Coastline for Antarctica created from various mapping and remote sensing sources, consisting of the following coast types: ice coastline, rock coastline, grounding line, ice shelf and front, ice rumple, and rock against ice shelf. Covering all land and ice shelves south of 60S. Suitable for topographic mapping and analysis. High resolution versions of ADD data are suitable for scales larger than 1:1,000,000. The largest suitable scale is changeable and dependent on the region. Major changes in v7.5 include updates to ice shelf fronts in the following regions: Seal Nunataks and Scar Inlet region, the Ronne-Filchner Ice Shelf, between the Brunt Ice Shelf and Riiser-Larsen Peninsula, the Shackleton and Conger ice shelves, and Crosson, Thwaites and Pine Island. Small areas of grounding line and ice coastlines were also updated in some of these regions as needed. Data compiled, managed and distributed by the Mapping and Geographic Information Centre and the UK Polar Data Centre, British Antarctic Survey on behalf of the Scientific Committee on Antarctic Research.
description: Dataset compiled from a variety of Antarctic map and satellite image sources. The dataset was created using ArcGIS and QGIS GIS software programmes and has been checked for basic topography and geometry checks, but does not contain strict topology. Quality varies across the dataset and certain areas where high resolution source data were available are suitable for large scale maps whereas other areas are only suitable for smaller scales. Each line has attributes detailing the source which can give the user further indications of its suitability for specific uses. Attributes also give information including 'surface' (e.g. grounding line, ice coastline, ice shelf front) and revision date. Compiled from sources ranging in time from 1990s-2022 - individual lines contain exact source dates.
DOI: 10.6084/m9.figshare.22631659
title: Supplementary Material for: Prenatal diagnosis of Gómez-López-Hernández syndrome

description: Introduction: Gomez-Lopez-Hernandez Syndrome (GLHS), also known as cerebello-trigeminal-dermal dysplasia is an extremely rare neuro-cutaneous disease, classically described by the triad of rhombencephalosynapsis (RES), bilateral focal alopecia and trigeminal anesthesia. The clinical and radiographic spectrum of GLHS is now known to be broader, including craniofacial and supra-tentorial anomalies, as well as neurodevelopmental issues. Case presentation: Here, we present a case of antenatally diagnosed GLHS with RES, hydrocephaly and craniofacial anomalies identified on ultrasound (low-set ears with posterior rotation, hypertelorism, midface hypoplasia, micrognathia and anteverted nares) which were confirmed by autopsy after termination of pregnancy at 23 weeks gestation. Discussion: As no known genetic causes have been identified and the classical triad is not applicable to prenatal imaging, prenatal diagnosis of GLHS is based on neuro-imaging and the identification of supporting features. In presence of a RES associated with cranio-facial abnormalities in prenatal (brachycephaly, turricephaly, low-set ears, midface retrusion, micrognathia), GLHS should be considered as "possible” according to postnatal criteria.
DOI: 10.6084/m9.figshare.25998064
title: Years of endurance exercise training remodels abdominal subcutaneous adipose tissue in adults with overweight/obesity

description: Adipose tissues metabolic profile in exercisers and non-exercisers with overweight/obesity
DOI: 10.6084/m9.figshare.26780206
title: Supplementary Material for: Teclistamab as an Effective Treatment for Pericardial Effusion in Relapsed Multiple Myeloma: Case Report and a brief literature review

description: Introduction: Multiple myeloma represents a malignant disorder of plasma cells. Extramedullary relapse in multiple myeloma is a rare occurrence, and pericardial involvement stands as an exceedingly uncommon manifestation. Only a few documented cases of pericardial effusion as an extramedullary relapse presentation of myeloma exist.

Bispecific antibodies are emerging as a novel class of immunotherapy drugs for the treatment of relapsed refractory multiple myeloma patients who have experienced failure with four prior lines of therapy. According to a literature review, none of the reported cases with pericardial effusion relapsed myeloma have been treated with bispecific antibodies, given that these drugs have only recently gained approval. Case Report: We present a rare case of a patient with pericardial effusion resulting from myeloma relapse, treated with teclistamab, a bispecific antibody, and achieving an excellent response. Conclusion: Bispecific antibodies, such as teclistamab, show great effectiveness as a treatment for patients with relapsed refractory multiple myeloma, including those with extramedullary disease.
DOI: 10.6084/m9.figshare.26934202.v2
title: Dataset for analysis

description: health literacy and pesticide protective behaviors of farmers in Thailand