cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id11272.1
title: StrainInfo SI-ID 11272.1

description: StrainInfo dataset 11272 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11235.1
title: StrainInfo SI-ID 11235.1

description: StrainInfo dataset 11235 about a strain of Rhodobacter capsulatus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11273.1
title: StrainInfo SI-ID 11273.1

description: StrainInfo dataset 11273 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11236.1
title: StrainInfo SI-ID 11236.1

description: StrainInfo dataset 11236 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11237.1
title: StrainInfo SI-ID 11237.1

description: StrainInfo dataset 11237 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11238.1
title: StrainInfo SI-ID 11238.1

description: StrainInfo dataset 11238 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11274.1
title: StrainInfo SI-ID 11274.1

description: StrainInfo dataset 11274 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11275.1
title: StrainInfo SI-ID 11275.1

description: StrainInfo dataset 11275 about a strain of Burkholderia stabilis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11276.1
title: StrainInfo SI-ID 11276.1

description: StrainInfo dataset 11276 about a strain of Burkholderia multivorans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11277.1
title: StrainInfo SI-ID 11277.1

description: StrainInfo dataset 11277 about a strain of Burkholderia cepacia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11350.1
title: StrainInfo SI-ID 11350.1

description: StrainInfo dataset 11350 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11351.1
title: StrainInfo SI-ID 11351.1

description: StrainInfo dataset 11351 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11352.1
title: StrainInfo SI-ID 11352.1

description: StrainInfo dataset 11352 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11353.1
title: StrainInfo SI-ID 11353.1

description: StrainInfo dataset 11353 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11239.1
title: StrainInfo SI-ID 11239.1

description: StrainInfo dataset 11239 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11240.1
title: StrainInfo SI-ID 11240.1

description: StrainInfo dataset 11240 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11241.1
title: StrainInfo SI-ID 11241.1

description: StrainInfo dataset 11241 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11278.1
title: StrainInfo SI-ID 11278.1

description: StrainInfo dataset 11278 about a strain of Pseudomonas tolaasii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11279.1
title: StrainInfo SI-ID 11279.1

description: StrainInfo dataset 11279 about a strain of Pseudomonas tolaasii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11280.1
title: StrainInfo SI-ID 11280.1

description: StrainInfo dataset 11280 about a strain of Pseudomonas tolaasii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11281.1
title: StrainInfo SI-ID 11281.1

description: StrainInfo dataset 11281 about a strain of Pseudomonas reactans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11354.1
title: StrainInfo SI-ID 11354.1

description: StrainInfo dataset 11354 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11355.1
title: StrainInfo SI-ID 11355.1

description: StrainInfo dataset 11355 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11356.1
title: StrainInfo SI-ID 11356.1

description: StrainInfo dataset 11356 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11242.1
title: StrainInfo SI-ID 11242.1

description: StrainInfo dataset 11242 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11243.1
title: StrainInfo SI-ID 11243.1

description: StrainInfo dataset 11243 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11244.1
title: StrainInfo SI-ID 11244.1

description: StrainInfo dataset 11244 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11245.1
title: StrainInfo SI-ID 11245.1

description: StrainInfo dataset 11245 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11282.1
title: StrainInfo SI-ID 11282.1

description: StrainInfo dataset 11282 about a strain of Pseudomonas reactans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11283.1
title: StrainInfo SI-ID 11283.1

description: StrainInfo dataset 11283 about a strain of Pseudomonas reactans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11284.1
title: StrainInfo SI-ID 11284.1

description: StrainInfo dataset 11284 about a strain of Pseudomonas reactans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11357.1
title: StrainInfo SI-ID 11357.1

description: StrainInfo dataset 11357 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11358.1
title: StrainInfo SI-ID 11358.1

description: StrainInfo dataset 11358 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11359.1
title: StrainInfo SI-ID 11359.1

description: StrainInfo dataset 11359 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11246.1
title: StrainInfo SI-ID 11246.1

description: StrainInfo dataset 11246 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11247.1
title: StrainInfo SI-ID 11247.1

description: StrainInfo dataset 11247 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11248.1
title: StrainInfo SI-ID 11248.1

description: StrainInfo dataset 11248 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11249.1
title: StrainInfo SI-ID 11249.1

description: StrainInfo dataset 11249 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11285.1
title: StrainInfo SI-ID 11285.1

description: StrainInfo dataset 11285 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11286.1
title: StrainInfo SI-ID 11286.1

description: StrainInfo dataset 11286 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11287.1
title: StrainInfo SI-ID 11287.1

description: StrainInfo dataset 11287 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11360.1
title: StrainInfo SI-ID 11360.1

description: StrainInfo dataset 11360 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11361.1
title: StrainInfo SI-ID 11361.1

description: StrainInfo dataset 11361 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11362.1
title: StrainInfo SI-ID 11362.1

description: StrainInfo dataset 11362 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id11363.1
title: StrainInfo SI-ID 11363.1

description: StrainInfo dataset 11363 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.6084/m9.figshare.8235482
title: Phmamm-9 (previously published as Astec-Pm9; Wild type Phallusia mammillata embryo, live SPIM imaging, stages 9-12)

description: <b>Phmamm-9 (</b><b>previously published as Astec-Pm9</b><b>)</b><br><b>Organism: </b><i>Phallusia mammillata</i> (Phlebobranch ascidian)<br><br><b>Description:</b><br>This dataset contains live imaging data of embryonic development in <i>Phallusia mammillata</i>. The cell membranes were fluorescently labeled by microinjection of mRNA encoding PH-citrine into an unfertilized egg.<br><b>Imaging conditions:</b><br>The embryo was imaged with a MuVi-SPIM light-sheet microscope for ~2.5 hours, from the 76-cell stage (Tp1, St. 9) up to the mid gastrula stage (Tp63, St. 12). Acquisitions were performed every 2 minutes at 18 °C in artificial seawater (ASW, salinity: 38 ppt).<br><b>Temporal alignment:</b><br>Embryonic development in <i>Phallusia mammillata</i> shows natural variability in timing between individuals. To enable direct comparison across datasets, developmental time was normalized based on cell number. <b>Phmamm-8 was chosen as the reference embryo</b>, and Phmamm-9 was temporally aligned to it. In the normalized timeline, the acquisition of Phmamm-9 corresponds to a starting point (t0) of approximately <b>260 minutes post fertilization (tpf)</b>, with an effective acquisition interval of <b>1.83 minutes</b>. This temporal alignment was performed using the <b>ASCIDIAN package</b> (see documentation for details). This allows stage-by-stage comparison of Phmamm-9 with Phmamm-8 and the other ascidian embryo datasets.<br><b>Data processing:</b>Fusion of images from four angles, whole-cell segmentation and temporal registration to correct for embryo movement were performed using the ASTEC pipeline (detailed documentation available here).In version 2, cell identification and fate assignments were further refined using the ASCIDIAN package (documentation available here).<b>Dataset versions:</b>Guignard et al, 2020:The four angle fusion images obtained using the ASTEC pipeline are shared in .inr format (fuse.tar.gz archive file).Whole cells were segmented using the ASTEC pipeline and shared in .inr format (post.tar.gz archive file).Surface meshes (.obj) povided in the mesh.tar.gz archive were produced using the VTK library and MeshLab.Individual cell geometric properties are shared in two different formats, .xml and .pkl (properties.tar.gz archive file).Biasuz et al, 2025 (v2):The four angle fusion images obtained using the ASTEC pipeline and temporally registered to compensate for embryo movements in the microscope are shared in .nii format (Astec-Phmamm9-v2_fuse.tar.gz archive file).Whole cells were segmented using the ASTEC pipeline and temporally registered to compensate for embryo movements in the microscope are shared in .nii format (Astec-Phmamm9-v2_post.tar.gz archive file).Individual cell geometric and naming properties are shared in .xml format (Astec-Phmamm9-v2_properties.tar.gz archive file).For additional details about the .nii format, please refer to this resource.<br>
DOI: 10.6084/m9.figshare.8235482.v2
title: Phmamm-9 (previously published as Astec-Pm9; Wild type Phallusia mammillata embryo, live SPIM imaging, stages 9-12)

description: <b>Phmamm-9 (</b><b>previously published as Astec-Pm9</b><b>)</b><br><b>Organism: </b><i>Phallusia mammillata</i> (Phlebobranch ascidian)<br><br><b>Description:</b><br>This dataset contains live imaging data of embryonic development in <i>Phallusia mammillata</i>. The cell membranes were fluorescently labeled by microinjection of mRNA encoding PH-citrine into an unfertilized egg.<br><b>Imaging conditions:</b><br>The embryo was imaged with a MuVi-SPIM light-sheet microscope for ~2.5 hours, from the 76-cell stage (Tp1, St. 9) up to the mid gastrula stage (Tp63, St. 12). Acquisitions were performed every 2 minutes at 18 °C in artificial seawater (ASW, salinity: 38 ppt).<br><b>Temporal alignment:</b><br>Embryonic development in <i>Phallusia mammillata</i> shows natural variability in timing between individuals. To enable direct comparison across datasets, developmental time was normalized based on cell number. <b>Phmamm-8 was chosen as the reference embryo</b>, and Phmamm-9 was temporally aligned to it. In the normalized timeline, the acquisition of Phmamm-9 corresponds to a starting point (t0) of approximately <b>260 minutes post fertilization (tpf)</b>, with an effective acquisition interval of <b>1.83 minutes</b>. This temporal alignment was performed using the <b>ASCIDIAN package</b> (see documentation for details). This allows stage-by-stage comparison of Phmamm-9 with Phmamm-8 and the other ascidian embryo datasets.<br><b>Data processing:</b>Fusion of images from four angles, whole-cell segmentation and temporal registration to correct for embryo movement were performed using the ASTEC pipeline (detailed documentation available here).In version 2, cell identification and fate assignments were further refined using the ASCIDIAN package (documentation available here).<b>Dataset versions:</b>Guignard et al, 2020:The four angle fusion images obtained using the ASTEC pipeline are shared in .inr format (fuse.tar.gz archive file).Whole cells were segmented using the ASTEC pipeline and shared in .inr format (post.tar.gz archive file).Surface meshes (.obj) povided in the mesh.tar.gz archive were produced using the VTK library and MeshLab.Individual cell geometric properties are shared in two different formats, .xml and .pkl (properties.tar.gz archive file).Biasuz et al, 2025 (v2):The four angle fusion images obtained using the ASTEC pipeline and temporally registered to compensate for embryo movements in the microscope are shared in .nii format (Astec-Phmamm9-v2_fuse.tar.gz archive file).Whole cells were segmented using the ASTEC pipeline and temporally registered to compensate for embryo movements in the microscope are shared in .nii format (Astec-Phmamm9-v2_post.tar.gz archive file).Individual cell geometric and naming properties are shared in .xml format (Astec-Phmamm9-v2_properties.tar.gz archive file).For additional details about the .nii format, please refer to this resource.<br>
DOI: 10.6084/m9.figshare.8235482.v1
title: Astec-Pm9 (Wild type Phallusia mammillata embryo, live SPIM imaging, stages 8-12)

description: Astec-Pm9 Live embryonic development of Phallusia mammillata 
(Phlebobranch ascidian). <br><br><br>Cell membranes were fluorescently labeled by microinjection of mRNA encoding PH-ctrine into unfertilized egg. The embryo has been live imaged with a MuVi-SPIM for two and a half hours, from the 64-cell stage (Tp 1, St. 8) up to the mid gastrulation (Tp 62, St. 12), at 18°C. <br><br>Whole cells were segmented using the ASTEC pipeline. Surface meshes provided were produced using the VTK library and MeshLab. <br>The period between time points is 114 seconds after normalization on the average development at 18°C.<br><br>* The four angle fusion images obtained using the ASTEC pipeline are shared in .inr format (fuse.tar.gz archive file). <br>* Whole cells were segmented using the ASTEC pipeline and shared in .inr format (post.tar.gz archive file).<br>* Surface 
meshes (.obj) povided in the mesh.tar.gz archive were produced using the VTK library and MeshLab.<br>* Individual cell geometric properties are shared in two different formats, .xml and .pkl (properties.tar.gz archive file).