cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/w2pwl4
title: FragScape

description: QGIS plugin to compute effective mesh size, a landscape fragmentation metric.
DOI: 10.57745/w9n5z9
title: Habitants exposés au retrait-gonflement des argiles et/ou aux risques d'inondation

description: Nombre d’habitants exposés au phénomène de retrait-gonflement des argiles (Aléa faible, moyen, fort) et/ou aux risques d’inondation (niveau de risque moyen de débordement des cours d’eau, ruissellement, submersion marine). INSEE_COM : commune (édition Juin 2023) ALEA_Faible : nombre d’habitants (2017) dans une zone de retrait-gonflement des argiles à faible aléa ; ALEA_Moyen : nombre d’habitants (2017) dans une zone de retrait-gonflement des argiles à aléa moyen ; ALEA_Fort : nombre d’habitants (2017) dans une zone de retrait-gonflement des argiles à aléa fort debordement_02Moy : nombre d’habitants (2017) exposés à un niveau moyen de débordement debordement_NA : nombre d’habitants (2017) non exposés au débordement ruissellement_02Moy : nombre d’habitants (2017) exposés à un niveau moyen de ruissellement ruissellement_NA : nombre d’habitants (2017) non exposés au ruissellement submersion_02Moy : : nombre d’habitants (2017) exposés à un niveau moyen de submersion marine submersion_NA : nombre d’habitants (2017) non exposés à une submersion marine
DOI: 10.57745/wxn9dt
title: Données supplémentaires pour : Long-term Differential Effects of Gastric By-pass and Sleeve Gastrectomy on Bone Mineral Density

description: Il s'agit de données supplémentaires d'un article scientifique publié avec le soutien de l'équipe Inserm Bioscar 1132 portant sur l'évaluation des marqueurs inlfluençant l'ostéodensitométrie de sujets obèses opérés de chirurgie bariatrique (à plus de 2 ans de leur opération)
DOI: 10.57745/x6ww8a
title: Xylem trait data set

description: Measurements of twelve xylem traits in stems and coarse roots of 60 adult angiosperm tree species from temperate, Mediterranean and tropical climates.
DOI: 10.57745/xaedhk
title: atlas_guyane_lauraceae: a small example of input datasets for running yap!

description: atlas_guyane_lauraceae: a small example of input datasets for running yap! Brief description These are three files (fasta, character, yaml) for running simple and short examples of some programs available in barcoding and metabarcoding in following gitlabs: `yap` (see yap gitlab ) `disseq` and `jelly_diskm`(see readme of Disseq project at Disseq gitlab ) What it contains The files consist in: , p&gt; Two files (fasta file and character file) are simple examples of input files for yap! (103 barcodes of trnH-psbA corresponding to Lauraceae family in project Guiana tree , see Guiana tree for more detailed explanation) One file is a yaml configuration file of the study of sample atlas_guyane_lauraceae with yap! (see yap manual) Where it comes from The fasta and character files have been extracted from R-Syst database with Lauraceae as taxon, and sequence length larger than 250 bp. This amounts to 103 barcodes. The yaml file has been written as an example of a yaml file to run yap! on this dataset. It is used in the tutorial of yap!
DOI: 10.57745/ttkkzq
title: Evaluation du stock de P. caeruleostictus en Guinée / Guinée-Bissau par des modèles de production et méthodes basées sur les fréquences de tailles

description: Le présent document s'inscrit dans le cadre du WP1 du projet DEMERSTEM et vise à effectuer une évaluation du stock de Pagrus caeruleostictus en Guinée et Guinée Bissau en utilisant les modèles de production de biomasse et des méthodes basées sur des fréquences de tailles. Il s’agit ainsi de réaliser un diagnostic, fournir une aide à la gestion en calculant des indicateurs, et renseigner sur l’état de cette ressource halieutique. Cette analyse est réalisée selon une hypothèse de pseudo-équilibre à l’aide du package demerstem, puis dans un cadre dynamique bayésien via le package JABBA (Winker et al, 2018) et enfin, via la méthode LBB (Froese et al, 2018). French (2023-06-26)
DOI: 10.57745/ugjzwt
title: Retour d’expérience technique de la crue du 2 octobre 2020 dans la vallée de la Vésubie - Volet torrentiel

description: Ce dataset regroupe le rapport de retour d'expérience et ses annexes. Il a été rédigé par l'ONF-RTM, l'ONF-DRN et INRAE ETNA, appuyés de chercheurs ayant contribué à l'analyse. Il visait à documenter et analyser les crues torrentielles qui ont touché le bassin versant de la Vésubie pendant la tempête Alex. Ce retour d’expérience technique a été réalisé à la demande de la Direction Départementale des Territoires et de la Mer des Alpes-Maritimes ainsi que du Ministère de la Transition Ecologique, Direction Générale de la Pré-vention des Risques, Service des Risques Naturels et Hydrauliques, qui en a confié le pilotage et la rédaction à l’ONF-RTM en collaboration avec l’INRAE dans le cadre de la mission d’intérêt général « Prévention des risques naturels en montagne » réalisée par l’ONF au bénéfice du MTE.
DOI: 10.57745/urfyeq
title: Replication data for "Combining single-gene-resistant and pyramided cultivars of perennial crops in agricultural landscapes compromises pyramiding benefits in most production situations"

description: R code for reproducing the analysis, results and figures presented in the article: Zaffaroni, M., Papaïx, J., Rimbaud, L., Geffersa, A. G., Rey,J.-F., Fabre, F. 2024. Combining single-gene-resistant and pyramided cultivars of perennial crops in agricultural landscapes compromises pyramiding benefits in most production situations. Phytopathology, in press.
DOI: 10.57745/vhgka8
title: Plasma metabolomics of young and aged hamsters infected with SARS-CoV-2

description: Data correspond to a metabolomic analysis of plasma samples collected from young and aged hamsters infected with SARS-CoV-2 7 days and 22 days post-infection
DOI: 10.57745/vi8qhi
title: Données Stéréopolis - Projet I-site URBAN VISION

description: Ensemble de données images issues de 5 caméras installées sur le toit du véhicule stéréopolis de l'IGN dans le cadre du projet I-site Urbanvision.
DOI: 10.57745/x6axa6
title: METABARFOOD - Comparison of amplicons

description: This report aims at comparing amplicons (ITS1, ITS2, D1/D2 and RPB2) on different metrics.
DOI: 10.57745/wapz4n
title: Surplus azotés départementaux (1920-2020) - résultats du modèle CASSIS-N

description: Ce jeu de données est le résultat de modélisation (CASSIS-N) de la quantification des surplus azotés annualisés à l'échelle départementale entre 1920 et 2020. Le surplus azoté est calculé en faisant la différence entre les apports d’azote (engrais minéraux et organiques, déposition atmosphérique et fixation symbiotique) et les exports qui correspondent aux récoltes. Le modèle utilise la base de données SAGRIDA comme données d'entrées. La description du modèle est disponible sur https://cassis.univ-tours.fr/CassisN.html et dans les publications associées. Le jeu de données permet de comparer les imports, exports et surplus d'azote à l'échelle départementale mais aussi leurs évolutions à l'échelle européenne avec d'autres jeux de données comparable.
DOI: 10.57745/wcibfv
title: Exploring how milk production, body weight and body condition dynamics affect reproductive success after artificial insemination in dairy goats_data

description: Four data set that served for the analysis in the paper entitled : "Exploring how milk production, body weight and body condition dynamics affect reproductive success after artificial insemination in dairy goats"
DOI: 10.57745/xmpavs
title: Data obtained during a field campaign conducted in spring 2018 within the framework of AgriMultiPol program, and published in New Particle Formation at a mixed peri-urban and agricultural site (https://doi.org/10.1016/j.scitotenv.2022.159370)

description: The data in this repository corresponds to data used in the article New Particle Formation at a mixed peri-urban and agricultural site (https://doi.org/10.1016/j.scitotenv.2022.159370). The context of data acquisition and their interpretation are given by the following abstract : New Particle Formation (NPF) is a major source of ultrafine particles that affect both air quality and climate. Despite emissions from agricultural activities having a strong potential to lead to NPF, little is known about NPF within agricultural environments. The aim of the present study was to investigate the occurrence of NPF events at an agricultural site, and any potential relationship between agricultural emissions and NPF events. A field campaign was conducted for 3 months at the FR-Gri-ICOS site (France), at an experimental farm 25 km west of Paris city centre. 16 NPF events have been identified from the analysis of particle number size distributions; 8 during the daytime, and 8 during the night-time. High solar radiation and ozone mixing ratios were observed during the days NPF occurred, suggesting photochemistry plays a key role in daytime NPF. These events were also associated with higher levels of VOCs such as isoprene, methanol, or toluene compared to non-event days. However, ammonia levels were lower during daytime NPF events, contributing to the hypothesis that daytime NPF events were not related to agricultural activities. On the other hand, temperature and ozone were lower during the nights when NPF events were observed, whereas relative humidity was higher. During these nights, higher concentrations of NO2 and ammonia were observed. As a result, agricultural activities, in particular the spreading of fertiliser on surrounding crops, are suspected to contribute to night-time NPF events. Finally, all the identified NPF events were also observed at SIRTA monitoring station 20 km from the FR-Gri ICOS site, showing that both night-time and daytime NPF events were regional processes. We hypothesise that night-time NPF may be related to fertiliser spreading over a regional scale, as opposed to the local activities at the farm. To our knowledge, this is the first time night-time NPF has been observed in the agricultural context.
DOI: 10.57745/yt15uv
title: Transcripts containing Mjav telomeric repeats and their matches on the Mjav genome

description: We assembled the transcriptomes of M. javanica J2 life stage RNA-seq datasets using TRINITY. We searched for the presence of the motifs constituting the Mjav telomeric repeat on the assembled transcripts using blastn. We then selected the transcripts that contained at least one of the 3 Mjav telomeric motifs were mapped to the genome using GMAP.
DOI: 10.57745/wmmbs6
title: ACEO vortices videos in a microfluidic channel with Top Bottom electrode configuration

description: These experimental and numerical (finite element modeling) data present image stacks of a microfluidic chamber, enclosed by a set of asymmetrical electrodes enabling the application of an electric field for the study of electrohydrodynamic effects. Experimentally, fluid movement is tracked using micrometric fluorescent tracers, enabling flow profiles to be measured perpendicular to the electrode surface. These profiles were obtained as a function of signal frequency, applied potential and electrolyte conductivity.
DOI: 10.57745/xkamf0
title: RPG complété 2018 département 90

description: RPG complété 2019. Complète le RPG campagne 2018 pour le département 90. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.57745/xxgx5x
title: Programme de sélection INRAE-AO

description: programme de sélection INRAE-AO
DOI: 10.57745/y1da3k
title: RPG complété 2020 Région Aquitaine

description: RPG complété 2020. Complète le RPG campagne 2020 pour les départements de la région Aquitaine (24, 33, 40, 47, 64). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2022.
DOI: 10.57745/ysmop2
title: Matches of Minc repeat on Minc contigs

description: Results of a BLASTn search with the M. incognita repeat as a query against the M. incognita contigs with an e-value threshold of 1e-35. Positions of the composite repeats, their orientation and presence / absence of the hmm profiles for the 3 constitutive motifs are indicated as well as the assignation to either a A or B subgenome according to McScanX analysis.
DOI: 10.57745/z11dxw
title: Prédictions spatialisées des distributions des éléments As, Cd, Co, Cr, Cu, Hg, Ni, Mo, Pb, Tl, Zn dans les sols de France à partir du RMQS

description: Nous présentons ici les estimations spatialisées issues de méthode de cartographie des sols par modélisation statistique, d'une liste de contaminants mesurées dans les échantillons prélevés dans le cadre du Réseau de Mesures de la Qualité des Sols. Le réseau RMQS repose sur le suivi de 2200 sites répartis uniformément sur le territoire français (métropole et outre-mer), selon une maille carrée de 16 km de côté. L’évaluation et le suivi de la qualité des sols sont fondés sur l’analyse de propriétés physiques, chimiques et biologiques des sols, associée à la recherche des sources de contamination diffuse et à la connaissance de l’historique de l’occupation et des pratiques de gestion de chaque site. L’ensemble des prélèvements, mesures et observations réalisés sur un site est détaillé dans le Manuel du Réseau de Mesures de la Qualité des Sols. La première campagne de prélèvement en métropole s'est déroulée de 2000 à 2009. Le système d'observation comprend ainsi les résultats issus de 2171 sites de métropole, répartis sur 2146 cellules et correspondant à la première campagne RMQS (2000 -2009). Les sites recouvrent diverses occupations (grandes cultures, prairies permanentes, forêts , vignes et vergers, milieux peu anthropisés, parcs urbains). Ces estimations sont obtenues par géostatistiques non linéaires avec selon les résultats de la validation croisée l'utilisation du krigeage ordinaire (KO) ou avec dérive externe (KED) sur la France métropolitaine pour les éléments As, Cd, Co, Cr, Cu, Hg, Ni, Mo, Pb, Tl et Zn. Teneurs, pour les prédictions des teneurs sur les deux couches d'analyses du RMQS (surface : 0-30 cm, subsurface : 30-50 cm). Ces estimations sont fourni en format raster Geotif et sont classée dans les répertoires en fonction du type d'analyse effectuée (extraction chimique totale HF ou partielle EDTA). L'estimation spatiale repose sur une technique de simulation statistique. la médiane des simulations est fournie par pixel. Une incertitude associée correspondant aux quantiles 5 et 95 % mais également l'erreur standard est fourni.
DOI: 10.57745/v9pohr
title: Recording data rainfall on the Oir watershed (Normandy-France)

description: The rainfall data recorded on the Oir river watershed are made on two sectors: at Cerisel mill and on the brook of La Roche (tributary of Oir river) for the Environmental Research Observatory (ERO) on Diadromous Fish in Coastal Rivers (DiaPFC). The DiaPFC ERO is a research infrastructure focused on the study of the evolution of diadromous fish populations under the influence of environmental and human-induced changes (mainly agriculture and climate). The Oir is a tributary of the Sélune: a coastal river that flows into the Mont Saint Michel bay. This river extends from West to East on 13.5 km and drains a catchment area of 85.4 km². The average flow is 1.09 m3/s. Agriculture and more particularly cattle breeding is the main human activity developed on this watershed. The Oir is colonized by several species of migratory fish: atlantic salmon, european eel, sea and river lampreys, sea trout... For the data recorded at Cerisel mill: The recording of the rainfall is carried out at the following geographical position: latitude: 48.627724; longitude: -1.273841 with an automatic rain gauge with troughs whose resolution is of 0.2 mm by tilting. The data are recorded since 07/20/2008. For the data recorded at the level of the brook of the Rock: The recording of the rainfall is carried out at the following geographical position: latitude: 48.647629°; longitude: -1.170500° with an automatic rain gauge with troughs whose resolution is of 0.2 mm by tilting. The data are recorded since 01/27/2010.
DOI: 10.57745/wjt4v3
title: Viral RNA extraction protocols from wastewater samples

description: The dataset was obtained with four RNA extraction protocols applied on 5 mL of raw wastewater (influent) samples. The protocols used were : - Protocol Z = commercial kit, based on silica column, and specific to wastewater samples. - Protocol NS1 = commercial kit, based on silica beads, and non specific to wastewater samples. - Protocol NS2 = Protocol NS1 with a neutral phenol chloroform treatment applied just after the lysis step. - Protocol SB = homemade protocol, based on silica beads, developed fo wastewater samples. Two kinds of analyses were performed on the samples: the quantification of the SARS-CoV-2 genome by targeting the E gene, the detection of RT-qPCR inhibitors by the quantification of F-specific RNA phages of genogroup II (FRNAPH-II). The delta Cq value between undiluted and diluted samples was used to detect the presence of RT-qPCR inhibitors. The analyses were carried out in three laboratories, with each comparing the Z protocol to one of the three other protocols (NS1, NS2 or SB). Each lab analysed influent samples collected in three wastewater treatment plant (WWTPs) with three distinct samples per WWTPs (n=9 per laboratory). Each sample was analyzed five times, giving 45 data points per laboratory. The dataset allows the comparison of the RNA extraction protocols for both RNA concentrations (SARS-CoV-2) and removal of RT-qPCR inhibitors (FRNAPH-II), for an effective optimisation of viral RNA extraction from complex matrices and high-quality downstream molecular analyses.
DOI: 10.57745/xa7fak
title: Reference samples - Representative Mn L2,3-edge spectra (raw data)

description: Representative Mn L2,3-edge spectra (raw data) for reference samples used in the paper entitled "Quantitative nanoscale mapping of Mn redox state in silicates by scanning transmission X-ray microscopy at the Mn L2,3-edges"
DOI: 10.57745/xckxgl
title: Monitoring wildlife using camera traps

description: Monitoring wildlife using camera traps in Lithuania’s Dzukija National Park Living Lab
DOI: 10.57745/z511a6
title: Combining fluorescent transcriptional reporter fusions and 4D-Confocal Laser Scanning Microscopy (CLSM) to decipher spatio-temporal patterns of gene expression within Bacillus subtilis submerged biofilms

description: The 4D spatio-temporal patterns of expression of 16 genes in Bacillus subtilis NDmed submerged biofilms were aquired by CLSM with single or dual fluorescent reporter fusions. Matrix genes are represented by epsA, tapA, bslA, srfAA, ypqP and capE, motility by hag, exoprotease by aprE, carbon metabolism by ackA, cggR, gapB, competence by comGA, cannibalism by skfA, respiration by ctaA and narG, and sporulation by spoIIGA and spoVC. Bacillus subtilis NDmed submerged biofilms were observed using a Leica SP8 AOBS inverted laser scanning microscope (CLSM, LEICA Microsystems, Wetzlar, Germany) at the INRAE MIMA2 platform (https://doi.org/10.15454/1.5572348210007727E12). Gfp excitation was performed at 488 nm with an argon laser, and the emitted fluorescence was recorded within the ranges 500-550nm. mCherry excitation was performed at 561 nm with an argon laser, and the emitted fluorescence was recorded within the range 600–750 nm. For propidium iodiide (PI) the fluorophore was exited at 488 nm and the emitted fluorescence collected in the range 600-750nm. For 4D (xyzt) acquisitions an image was taken every 1 hour for 48 hours or 1 and half hours for 72 h (512 × 512 pixels, pixel size 0.361 µm, 1 image every z = 1 µm with a scan speed of 600 Hz).
DOI: 10.57745/um6zbh
title: Temporal monitoring of soil macroinvertebrate communities at PIC-SIC trial

description: Le projet scientifique intègre la conception de systèmes innovants par prototypage, incluant leur évaluation ex ante par modélisation, et leur évaluation expérimentale de longue durée au champ. Cette dernière étape permet d’en mesurer les performances, d’identifier les évolutions des états du milieu engendrées à moyen terme et de repérer les verrous techniques liés aux systèmes proposés. Quatre systèmes de culture différents du point de vue des contraintes environnementales assignées, ont ainsi été mis en place. La surface totale de lexpérimentation est de 6.2 ha. Il y a 3 répétitions par modalité (surface parcellaire élémentaire : 0.4 ha). Les macroinvertébrés de surface ont été suivis de 2010 à 2015.
DOI: 10.57745/uogrpy
title: Synthetic Datasets and Evaluations for Sub-pixel Displacements Estimation from Optical Satellite Images with Deep Learning

description: Contains 3 synthetic datasets (UNI, DIS, UNI-5px), with three corresponding trained models, based on a CNN architecture. The three datasets contains pairs of small (either 16x16 or 32x32 pixels) windows that simulate shifts. Contains also evaluations on realistic synthetics examples of a deep learning pipeline using two of the three models presented.
DOI: 10.57745/vm1wzw
title: Dataset for "Depth Dependent Deformation and Anisotropy of Pyrolite in the Earth's Lower Mantle"

description: Data files from the experiments presented in corresponding publication include: raw .tif images of collected multigrain X-ray diffraction, filtered peak files (.flt), crystallographic information files (.cif), and the parameter files (.prm) necessary for grain indexing. Dataset available after the article is published.
DOI: 10.57745/w0kiug
title: One Year of Grassland Vegetation Dynamics in two Sheep-Grazed Agrivoltaic Systems

description: Data associated with the research paper entitled: One Year of Grassland Vegetation Dynamics in two Sheep-Grazed Agrivoltaic Systems
DOI: 10.57745/wzl39n
title: Dissecting the nutritional regulations of a whole amino acid transporter family from a complex genome species: A holistic approach turning weaknesses into strengths

description: This dataset is related to the study entitled: "Dissecting the nutritional regulations of a whole amino acid transporter family from a complex genome species: A holistic approach turning weaknesses into strengths" and contains raw data, script (R) and results of statistical tests performed for this study.
DOI: 10.57745/xefdi8
title: McEliece Parameter Sets Optimized for Processing in Memory Architectures - Additional Material

description: Additional materials for the CBCrypto 2024 publication "McEliece Parameter Sets Optimized for Processing in Memory Architectures". It contains the RISC-V simulator and modified Classic McEliece algorithms introduced in the paper, as well as a spreadsheet of all experimental results analyzed in the paper.
DOI: 10.57745/xrruty
title: Air quality assessment in (semi) liquid food packaging environments

description: The dataset includes information on airborne microorganisms in the packaging areas of (semi) liquid food product facilities. It encompasses air samples collected from January to September 2022 from fourteen diverse (semi) liquid food producers and the outdoor environment in Flanders, Belgium. Quantitative data on airborne microorganisms, specifically Total Mesophilic Plate Count (TMPC) and yeast and mould (Y&M) count, are provided, measured using impaction and settle plate methods on Plate Count Agar and Rose Bengal Chloramphenicol agar, respectively. Additionally, the dataset features particle data categorized into six size-based channels obtained through a laser particle counter. Environmental parameters, including temperature and relative humidity, monitored with a hygrometer, are also included in the dataset. The dataset enables a detailed exploration of the impact of outdoor air, seasonal variations, and ventilation systems on airborne microorganism prevalence in (semi) liquid food packaging areas.