cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.hk5n4m1/1
title: Ant_Plant_interaction_networks

description: Ant-plant interaction networks sampled in December 2010 and January 2011 within a grid system managed by the Brazilian Research Program in Biodiversity (PPBio) (9º48ʹS, 58º15ʹW, between 230 and 274 m a.s.l.). This grid is composed of sampling plots uniformly distributed between two parallel east-west trails 5 km in length, located 1 km apart (5 km2). A sampling plot of 250 x 30 m (7,500 m2) was established every km along each trail (12 plots total). At the local sampling scale, we subdivided each of the 12 plots into ten 25 x 30 m (750 m²) adjacent subplots. Within each interaction matrix, lines represent plant species and columns represent ant species in which elements Aij represent the number of interactions between ant species i and plant species j. The name of each file represents the number of the plot and the spatial class within each plot. For example, in file P1_0_25.txt, "P1" represents "Plot 1" and "0_25" represents that the interactions recorded within this matrix are located between the first 0 and 25 meters, while the file P1_total.txt represents all interactions records in "Plot 1" (from 0 to 250 meters ).
DOI: 10.5061/dryad.hr1hh75/1
title: 5k_loci

description: 5000 loci simulated in fastsimcoal2, filtered for different minor allele counts, and formatted for `structure`.
DOI: 10.5061/dryad.hr1hh75/2
title: 40k_loci

description: 40000 loci simulated in fastsimcoal2, filtered for different minor allele counts, and formatted for `structure`. Also includes `structure` input for 1000 locus constant length subsamples.
DOI: 10.5061/dryad.hr1hh75/3
title: satrapa_structure

description: Raw and minor allele count filtered `structure` input for empirical Regulus satrapa ddRADseq SNP data.
DOI: 10.5061/dryad.hv7369k/1
title: Shipley_ECOG_Dryad

description: Meta data used in publication
DOI: 10.5061/dryad.kg8tf1s/1
title: Supplementary material - Insights into VSM diversity and Neoproterozoic biostratigraphy in the light of recent Brazilian discoveries

description: List of petrographic thin sections containing VSMs from Kwagunt, Callison Lake, Urucum and Ryssö formations and Eleonore Bay and Visingsö groups, and tables with measurements of different VSMs species.
DOI: 10.5061/dryad.m073h5q/1
title: SudykaBL2018
DOI: 10.5061/dryad.nb20b4g/1
title: bird_species_detections

description: Data-base of records of bird species detections at river sites. File includes attributes descriptions in a separate sheet.
DOI: 10.5061/dryad.rg27v0h/1
title: Data
DOI: 10.5061/dryad.rj237db/1
title: Jackson_etal_analyses

description: This zipped folder contains 6 files, 2 .RData files and 4 .R scripts. These files enable the reader to 1) View and plot data from the final analyses, and 2) Run individual-based popualtion projections, from the manuscript entitled "Long-term trends in wild-capture and population dynamics point to an uncertain future for captive elephants."
DOI: 10.5061/dryad.rr379bp/1
title: Animal_info

description: Individual data used as predictors in the models used for model selection approaches. Data compiled from demographic data of the stufdy population, behavioural observation data and enzyme-immunoassays of non-invasively collected samples. Further information see Metadata-file.
DOI: 10.5061/dryad.rr379bp/2
title: Strongyle_presence_data

description: Derived from results of faecal egg counts. Strongyle presence used for patch occupancy modelling to assess predictors of reinfection. For further information see Metadata-file.
DOI: 10.5061/dryad.rr379bp/3
title: Model.Selection.Output

description: Results of the model selection analysis, full dataset. For further detail see Metadata-file.
DOI: 10.5061/dryad.rr379bp/4
title: Marker.Model.Selection.Output

description: Results of model selection analyses using the susceptibility dataset. For further information see Metadata-file.
DOI: 10.5061/dryad.rr379bp/5
title: 2014_Model.Selection.Output

description: Results of the model selection analysis, exposure dataset. For further detail see Metadata-file.
DOI: 10.5061/dryad.t6v7t8s/1
title: Raw data from expression levels of SiSTL1 , SiSTL1-2, SiSTL1-3, E2F1 and E2F2
DOI: 10.5061/dryad.t6v7t8s/2
title: Raw data from  density curves of the BSCs and MCs containing zero to six
DOI: 10.5061/dryad.t6v7t8s/4
title: Raw data from expression levels of 11 representative cell-cycle regulatory genes
DOI: 10.5061/dryad.t6v7t8s/5
title: Raw data from flow cytometric analysis
DOI: 10.5061/dryad.t6v7t8s/6
title: Raw data from the germination trials 20181119
DOI: 10.5061/dryad.vc3143h/1
title: Input file for Open CMR analysis

description: The file "Pollock_Mark.inp" is in a standard Open Capture Mark Recapture format, where to model the blocks and gender in program MARK the following codes were used; 100000- Block 1 male; 010000-Block1 female; 001000- Block 1 Unidentified gender; 000100- Block 2 male; 000010-Block 2 Female and 000001- Block 2 Unidentified gender
DOI: 10.17632/5jzx6ptn9r.1
title: Data for: Transport of carbon dioxide and heavy metals from hydrothermal vents to shallow water by hydrate-coated gas bubbles

description: This datasetis obtained over the Jan Mayen vent fields and is showing a non-buoyant plume, created from these vents, enriched in Mn, CH4, pCO2 and 3He. Enrichments of Fe and Cu are found predominantly above and below the volatile enrichments which is linked to the unique style of venting occuring here.
DOI: 10.17632/9zwmn4g4zc.1
title: Data for: Analysis of Oil and Gas Flow Characteristics in the Reservoir with the Elastic Outer Boundary

description: This data is used to draw characteristic curves of the dimensionless bottom-hole pressure and its derivative .
DOI: 10.17632/dks8t683ph.1
title: Data for: Tree cover shows an inverse relationship with depressive symptoms in elderly residents living in U.S. nursing homes

description: Relationship between tree canopy cover, depressive symptoms, and quality of care measures at U.S. nursing homes (2011).
DOI: 10.17632/shbh2g6xy6.1
title: Data for: Crustal Stretching Style Variations in the Northern Margin of the South China Sea

description: Results of the manuscript could be reproduced based on this code and the open-source data sets described in paper.
DOI: 10.5061/dryad.4n5929c/10
title: 32DWT_B
DOI: 10.5061/dryad.4n5929c/11
title: 32DWT_C
DOI: 10.5061/dryad.4n5929c/12
title: 32D_D814V_A
DOI: 10.5061/dryad.4n5929c/13
title: 32D_D814V_B
DOI: 10.5061/dryad.4n5929c/14
title: 32D_D814V_C
DOI: 10.5061/dryad.4n5929c/9
title: 32DWT_A
DOI: 10.5061/dryad.5874v7h/1
title: Fraaije et al 2018 JAPPL

description: Eight worksheets with data on physicochemical variables and on aquatic and riparian vegetation in restored and nearby unrestored reaches of channelized lowland streams in the Netherlands, with description of column headers (worksheet 1), data on abiotic variables of riparian zones (worksheets 2 and 3), data on abiotic variables of the in-stream habitat (worksheets  4, 5 and 6), and data on plant species percent cover per plot (worksheets 7 and 8).
DOI: 10.5061/dryad.5g46558/1
title: datafile
DOI: 10.5061/dryad.5s0860n/1
title: Data_Bey_Marzilger_Hinkson_Arampatzis_Legerlotz
DOI: 10.5061/dryad.7v87nf5/1
title: Angst_Mueller_GCB_2019_soil_organic_carbon_stability_data

description: This file includes the data for soil clay content, soil chemical properties, and indices of soil organic matter stability as reported in: https://doi.org/10.1111/gcb.14548
DOI: 10.5061/dryad.818c434/1
title: VCF file containing the SNPs obtained in this study
DOI: 10.5061/dryad.8dm275k/2
title: Migratory Strategy

description: Claw hydrogen isotope values and individual data (sex, age, size, etc.) for all captured bluebirds.
DOI: 10.5061/dryad.8dm275k/3
title: Pairs

description: Data for all pairs with claw hydrogen isotope values for both males and females.
DOI: 10.5061/dryad.8dm275k/4
title: Hydrogen Isotope Standards

description: Repeated measurements of hydrogen isotope signatures of standards.
DOI: 10.5061/dryad.9fp97gk/1
title: Climatic Niche Model Raster Files

description: Contains Species Folders. In each folder ASCII raster files of climatic niche models are organized with respect to time period. LIG - Last Interglacial, LGM - Last Glacial Maximum, MDH -Mid Holocene, Current (CUR, 1950 - 2000).Forest Owlet - Athene blewitti, Jungle Owlet - Glaucidium radiatum, Spotted Owlet - Athene brama, Little Owl - Athene noctua
DOI: 10.5061/dryad.b47mj.1
title: Data from: Males harm females less when competing with familiar relatives
DOI: 10.5061/dryad.b47mj.1/1.1
title: Lymbery & Simmons 2017 Raw Data

description: Data from the publication "Males harm females less when competing with familiar relatives" in Proceedings of the Royal Society of London B, by Samuel J Lymbery and Leigh W Simmons. Sheet one contains the raw data, and sheet two contains a legend explaining column titles.
DOI: 10.5061/dryad.b47mj.1/2.1
title: Lymbery & Simmons Raw Data Minus Outliers

description: Data file containing the same data as the first file associated with this manuscript, but with outliers removed as described in the article.
DOI: 10.5061/dryad.b47mj.1/3.1
title: Lymbery & Simmons 2017 R Script

description: Contains all R code used to analyse data from Lymbery and Simmons (2017) "Males harm females less when competing with familiar relatives."
DOI: 10.5061/dryad.b47mj.2/1.2
title: Lymbery & Simmons 2017 Raw Data

description: Data from the publication "Males harm females less when competing with familiar relatives" in Proceedings of the Royal Society of London B, by Samuel J Lymbery and Leigh W Simmons. Sheet one contains the raw data, and sheet two contains a legend explaining column titles.
DOI: 10.5061/dryad.b47mj.2/2.2
title: Lymbery & Simmons Raw Data Minus Outliers

description: Data file containing the same data as the first file associated with this manuscript, but with outliers removed as described in the article. Sheet one contains the raw data, and sheet two contains a legend explaining column titles.
DOI: 10.5061/dryad.b47mj.2/3.2
title: Lymbery & Simmons 2017 R Script

description: Contains all R code used to analyse data from Lymbery and Simmons (2017) "Males harm females less when competing with familiar relatives."
DOI: 10.5061/dryad.c04tj85/1
title: MYLU Skin Temperature Data

description: Skin temperature data, torpor onset temperature, and reproductive status of individual little brown bats at Salmonier Nature Park, Newfoundland from June to August 2016 and 2017.
DOI: 10.5061/dryad.c04tj85/2
title: Ambient Temperature and Humidity Data

description: The ambient temperature and humidity at Salmonier Nature Park, Newfoundland from June to August 2016 and 2017. Data includes descriptions of the locations that Hygrochron iButtons were placed.
DOI: 10.5061/dryad.c04tj85/3
title: Wind and Precipitation Data

description: The wind and precipitation data in the Avalon region of Newfoundland from June to August 2016 and 2017. Data was recorded from a weather station in St.John's in 2016 and in Brigus Junction in 2017.
DOI: 10.5061/dryad.c04tj85/4
title: Global Model Multiple Linear Regression Code

description: Code for the global models for the multiple linear regression analyses (torpor duration and depth).
DOI: 10.5061/dryad.c04tj85/5
title: Global Model Logistic Regression Code

description: Code for the global model for the logistic regression analysis (torpor frequency).
DOI: 10.5061/dryad.cv0js0f/1
title: Exp1_egg

description: It contains the data of egg laying in Exp. 1. ID: identify of each replicate. Treatment: assigned treatment for each replicate (isolated, paired or iso-paired). Treatment2: assigned treatment for each replicate (isolated or paired). FirstEgg: the week eggs are found in the container of each replicate. DurationEgg: the number of weeks from FirstEgg until the end of experiment. TotalNegg: the total number of egg masses found in the container. RelEgg: the relative number of egg mass produced by one individual in a week. Week4-10: the number of egg masses found in the container in each week. Remarks: remarks for some replicates. We excluded several replicates for analyses, due to the absence of egg laying or low background mortality.
DOI: 10.5061/dryad.cv0js0f/2
title: Exp1_SL

description: It contains the data of body size in Exp. 1. ID: identify of each replicate. Treatment: assigned treatment for each replicate (isolated, paired or iso-paired). Treatment2: assigned treatment for each replicate (isolated or paired). Shell length (mm): shell length of each snail at the end of experiment.
DOI: 10.5061/dryad.cv0js0f/3
title: Exp2_egg

description: It contains the data of egg laying in Exp. 2. ID: identify of each replicate. Treatment: assigned treatment for each replicate (isolated, paired or grouped). #ind: the number of individuals in a container. Batch: identity of batch. FirstEgg: the day that first eggs are found in the container of each replicate. DurationEgg: the number of days from the FirstEgg until the end of experiment. TotalNegg: the total number of egg masses found in the container. Total/Treat: the number of egg masses laid by each individual. RelEgg: the relative number of egg mass produced by one individual in a day. Day25-62: the number of egg masses found in the container in every four days. Remarks: remarks for some replicates. We excluded several replicates for analyses, due to the absence of egg laying or low background mortality.
DOI: 10.5061/dryad.cv0js0f/4
title: Exp2_SL

description: It contains the data of body size in Exp. 2. ID: identify of each replicate. Treatment: assigned treatment for each replicate (isolated, paired or grouped). Week: the week their body size was measured. Shell length (mm): shell length of each snail.
DOI: 10.5061/dryad.cv0js0f/5
title: Exp1_raw.gene

description: It contains the raw data of qPCR in Exp. 1. Plate: qPCR run identity. Running date: the date of each qPCR run. Well: well identify. Target: the identify of gene (SFP genes and house-keeping genes). Content: the assigned content of each well [Unknown, Negative Control (Neg Ctrl), Plate control (Plate ctrl)]. r.ID: randomly assigned sample identity to mask the true identity of each sample during qPCR. For the plate control, it also shows the dilution factor. ID: identify of each replicate. Treatment: assigned treatment for each replicate (isolated, paired or iso-paired). Ct: the output of qPCR.
DOI: 10.5061/dryad.cv0js0f/6
title: Exp1_gene.rct

description: It contains the data of relative expression for SFP genes in Exp. 1. r.ID: randomly assigned sample identity to mask the true identity of each sample during qPCR. Treatment: assigned treatment for each replicate (isolated, paired or iso-paired). log(2dct_Lhis): relative expression of SFP genes, normalized by a house-keeping gene (Lhis).
DOI: 10.5061/dryad.cv0js0f/7
title: Exp2_raw.gene

description: It contains the raw data of qPCR in Exp. 2. Plate: qPCR run identity. Running date: the date of each qPCR run. Well: well identify. Target: the identify of gene (SFP genes and house-keeping genes). Content: the assigned content of each well [Unknown, Negative Control (Neg Ctrl), Plate control (Plate ctrl)]. r.ID: randomly assigned sample identity to mask the true identity of each sample during qPCR. For the plate control, it also shows the dilution factor. ID: identify of each replicate. Treatment: assigned treatment for each replicate (isolated, paired or grouped). Ct: the output of qPCR.
DOI: 10.5061/dryad.cv0js0f/8
title: Exp2_gene.rct

description: It contains the data of relative expression for SFP genes in Exp. 1. r.ID: randomly assigned sample identity to mask the true identity of each sample during qPCR. Treatment: assigned treatment for each replicate (isolated, paired or grouped). log(2dct_mean.ref): relative expression of SFP genes, normalized by all three house-keeping gene.
DOI: 10.5061/dryad.gf4f363/1
title: Scripts

description: Phase coupling and phase-amplitude coupling scripts
DOI: 10.5061/dryad.gf4f363/2
title: 7405_data

description: Preprocessed MEG datasets and anatomical data
DOI: 10.5061/dryad.gf4f363/3
title: 8007_data

description: Preprocessed MEG datasets and anatomical data
DOI: 10.5061/dryad.gf4f363/4
title: 8395_data

description: Preprocessed MEG datasets and anatomical data
DOI: 10.5061/dryad.gf4f363/5
title: 9193_data

description: Preprocessed MEG datasets and anatomical data
DOI: 10.5061/dryad.gf4f363/6
title: 10615_data

description: Preprocessed MEG datasets and anatomical data
DOI: 10.5061/dryad.gf4f363/7
title: 11130_data

description: Preprocessed MEG datasets and anatomical data
DOI: 10.5061/dryad.jg30j4v/1
title: Preite_etal_2019_data.tar

description: This tar zipped folder contains the input and output files used for the genome scans described in the publication plus the SnpEff annotation data used.
DOI: 10.5061/dryad.m3t6p5g/1
title: Mytilus genbank 11-
DOI: 10.5061/dryad.nb20b4g/2
title: point_counts_coordinates

description: List of point-counts where bird species were sampled at river sites. File includes attributes description in a separate sheet.
DOI: 10.5061/dryad.rr379bp/6
title: Model.Selection.Output_week_non_linear.csv

description: Results of the model selection analysis, full dataset, including a quadratic fit of week past treatment. For further detail see Metadata-file.
DOI: 10.5061/dryad.rr379bp/7
title: Marker.Model.Selection.Output_week_non_linear

description: Results of the model selection analysis, susceptibility dataset, including a quadratic fit of week past treatment. For further detail see Metadata-file.
DOI: 10.5061/dryad.v67003c/1
title: R files
DOI: 10.5061/dryad.v8c7f47/1
title: Flut_paper_data_complete

description: Flut_paper_data_complete.csv contains all of the data collected on wild S. ocellatus nesting male (NM) cohorts described in the manuscript, including: animal #, nest location ID, treatment group (V=vehicle, F=flutamide; randomly assigned and blinded prior to analysis of molecular and behavioral data), relative gene expression values by gene and brain region (generated by MCMC qPCR package in R), GSI (g), larval counts, NM larval paternity/ proportion of larvae sired by NM, behavior of nesting male as well as behavior of conspecifics at each nest. "Post" behavioral data are averaged across 3 post-injection observation periods.  Detailed methods are described in the manuscript.
DOI: 10.5061/dryad.v8c7f47/2
title: injection_male_sperm_data

description: The file injection_male_sperm_data.csv contains data from the sperm characterization study described in this paper. Data collection is described in detail in the manuscript's Methods section. Males were treated with vehicle or flutamide and three days later sperm were collected, activated, and analyzed for VAP (mean velocity, μm s−1), VSL (straight line velocity, μm s−1), VCL (curvilinear velocity/swimming speed, μm s−1), STR (straightness, %), LIN (linearity, %), Size, Total Count, Motile Count, Slow Count, and Static Count.
DOI: 10.5061/dryad.vd7d8v6/1
title: Space-use and social association in caribou data file

description: Data used to generate linear mixed models and figures for social association networks, home range overlap networks, and home range area.
DOI: 10.5061/dryad.vd7d8v6/2
title: final-dt-site-fidelity-dryad

description: Data used for linear mixed model and figure for site fidelity in caribou.
DOI: 10.17632/9fv9mjr5k2.1
title: Data for: Inverting magnetotelluric responses in a three-dimensional earth using fast approximations based on artificial neural networks

description: Trained network and auxillary files for neural network MT forward function approximation
DOI: 10.17632/j37jmv2pxd.1
title: Data for: Analyzing volatility spillover between the oil market and stock markets in oil-importing and oil-exporting countries: implications on portfolio management

description: oil and stock spillover
DOI: 10.17632/sxyw2gnrhd.1
title: Data for: 3354170

description: This data covers the pension adequacy estimate for Bulgaria as well as money-weighted returns of pensions funds in Bulgaria.
DOI: 10.5061/dryad.3161qp0/1
title: Samples information and microsatellite genotypes_Galeocerdo cuvier

description: Tab delimited text. On each line is indicated: the individual ID (ID); the oceanic basin where it was sampled (Oceanic basin); the sampling locality (Locality); the sampling locality code (Locality code); the date of sampling (Date of sampling); the sex of the individual (Sex); the total length of the individual in cm (TL (cm)); the mitochondrial haplotypes of the control region, the COI gene and the cytb gene (Haplotype CR, Haplotype COI, Haplotype cytb); the genotype of the individual at the 27 microsatellite loci used. Missing data are indicated by NA.
DOI: 10.5061/dryad.3583v22/2
title: Table 1. Characteristics of patients

description: Characteristics of patients with TTR-FAP in all cohorts.
DOI: 10.5061/dryad.3tj5c7p/1
title: Data for "Too much of a good thing? Finding the most informative genetic dataset to answer conservation questions"

description: This data file contains the genotypes from 96 devils and four different data types. The microsatellite genotypes were generated using the software GeneMarker V 1.75, the RRS dataset was provided as a proprietary pipline from Diversity Array Technologies, and the functional candidate region dataset was generated from a previous study (see current paper for details), the raw IR values used in the study, and the observed heterozygosities of all loci in the study. Detailed descriptions are provided in a "readme" tab at the beginning of the file.
DOI: 10.5061/dryad.585b5k5/1
title: Alpine ibex relocation data along with environmental predictors used in resource selection analyses

description: Male ibex observations and environmental data collected from May to October (2010-2011) in the Gran Paradiso National Park, Italy.
DOI: 10.5061/dryad.607cq34/1
title: aspi_volatile_swabs

description: Data regarding response of Aspidoscelis exsanguis to volatile odorants. Contains all variables analyzed in the publication as well as some additional non-significant variables that were not included. Also includes an individual not included inthe published manuscript as it was determined to be of a different species.
DOI: 10.5061/dryad.607cq34/2
title: virgatus_volatile_trials

description: Data regarding the response of Sceloporus virgatus to volatile odorants. Contains the variables included in the publication as well as some non-significant variables not included.
DOI: 10.5061/dryad.607cq34/3
title: aspi_volatile_response

description: R Script used to analyze the Aspidoscelis exsanguis data included in the publication
DOI: 10.5061/dryad.6450hv3/3
title: SorensonAndDamschen2019_EndingPlantMeasurements_NoZeros_TubeLevel

description: At the end of the summer, each tube was extracted, cut open, soil sprayed out, and seedlings with roots gently disentangled from other roots. Individuals were dried, separated into roots stems and leaves and weighed to the nearest one-hundredth of a mg.  Stems length was also measured."
DOI: 10.5061/dryad.6450hv3/5
title: SorensonAndDamschen2019_MidSummerPresenseAndHeight_TubeLevel

description: Midsummer Survival and height of seedlings was recorded July 12–15. Each tube was visited, each seedling was identified with a colored pin, and seedling length was measured with a ruler to the nearest 0.1 cm.
DOI: 10.5061/dryad.6p6568r/1
title: 100treesSNPhylo

description: The 100 random post burn-in trees from the SNPhylo analyses.
DOI: 10.5061/dryad.6p6568r/2
title: 4barmodjawreducedConv

description: Data table containing phenotypes for comparative analyses
DOI: 10.5061/dryad.6sf5184/1
title: B.brassicae data file

description: The file encompasses the complete life table data of Brevicoryne brassicae monitored at 10, 15, 20, 25, 30, and 35 degree celcius on Marcanta cabbage cultivar
DOI: 10.5061/dryad.761js4b/1
title: data_miranda et al_PRSB

description: Data collected in manipulated experiment performed in mesocosms.
DOI: 10.5061/dryad.7r3742r/1
title: Smith&Waring_Ecosystems_data

description: soil biogeochemical data for Smith and Waring (2018) Ecosystems