cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19501924.v1
title: Dataset

description: This is a description
DOI: 10.6084/m9.figshare.27092545.v1
title: two dataset

description: this is dataset for article How Active Personality Affects Online Learning Engagement among College Students? The Mediating Role of Positive Emotions and Learning Motivation
DOI: 10.6084/m9.figshare.28692026.v1
title: Creative Output New Voices for Symphonic Windband

description: Material Creative Output "New Voices for Windband"
DOI: 10.6084/m9.figshare.6340658.v1
title: The engagement of cortical areas preceding exogenous vergence eye movements

description: Data underlying the findings reported in a submitted manuscript entitled <b>The engagement of cortical areas preceding exogenous vergence eye movements</b><br>
DOI: 10.23645/epacomptox.20394501.v8
title: ToxValDB v9.6

description: <b>The Toxicity Value Database (ToxValDB)</b> is a large compilation of human health-relevant <i>in vivo</i> toxicology data, including data on both <i>in vivo</i> toxicity experiments and derived toxicity and guideline values. ToxValDB was designed to provide high-level summary data in a standardized format to facilitate comparison and data use across many individual databases. Through the links below, you can access archived versions of the databases. The most recent version of ToxVal is available on the EPA CompTox Downloadable data website - https://www.epa.gov/comptox-tools/downloadable-computational-toxicology-data#AT<br>Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.6084/m9.figshare.19184831.v1
title: Burnout among resident physicians in Sudan.xls

description: Survey data of burnout syndrome among resident physicians in Sudan <br>
DOI: 10.6084/m9.figshare.5122936.v1
title: Supplementary Material for: The Antimicrobial Peptide hLF1–11 Drives Monocyte-Dendritic Cell Differentiation toward Dendritic Cells That Promote Antifungal Responses and Enhance Th17 Polarization

description: The hLF1–11 peptide comprising the first 11 N-terminal residues of human lactoferrin exerts antimicrobial activity in vivo, enhances the inflammatory response of monocytes and directs monocyte-macrophage differentiation toward cells with enhanced antimicrobial properties. In this study, we investigated the effects of hLF1–11 on human monocyte-dendritic cell (DC) differentiation and subsequent T cell activation. Results revealed that – compared to control (peptide-incubated) DCs – hLF1–11-differentiated DCs displayed enhanced expression of HLA class II antigens and dectin-1, and increased phagocytosis of <i>Candida albicans</i>. In addition, hLF1–11-differentiated DCs produced enhanced amounts of reactive oxygen species, IL-6 and IL-10, but not IL-12p40 and TNF-α, upon stimulation with <i>C. albicans</i>. Moreover, 6-day-cultured hLF1–11-differentiated DCs and control (peptide-incubated) DCs that had been stimulated with a Th17-inducing mix of antigens (including <i>C. albicans</i>) for 24 h were cocultured with autologous CD4+ T cells for 72 h and then the levels of IL-10, IL-17 and IFN-γ production and the percentage of cytokine-producing T cells were assessed. The results revealed that the hLF1–11-differentiated DCs induced an enhanced IL-17, but reduced IFN-γ, production by T cells as compared to control (peptide-incubated) DCs. Collectively, the hLF1–11 peptide drives monocyte-DC differentiation toward DCs that promote antifungal responses and enhance Th17 polarization.
DOI: 10.6084/m9.figshare.20009990.v1
title: Noblis ASFV PCR Assays

description: Predicted PCR assays for detection of ASFV, including genotypes I and II deverloped at Nobils, Inc. using the BioLaboro pipeline, which includes BioVelocity, Primer 3, and PSET.
DOI: 10.6084/m9.figshare.20291937.v1
title: 16S libraries of endophytic communities in olive trees subjected to salt stress

description: Paired-end sequences spanning the V3–V4 regions of the bacterial 16S rRNA. Bacterial metabarcoding of Olive tree samples subjected to salt stress. 4 cultivars (Frantoio, Leccino, Lecciana, and Oliana), three experimental conditions (Control, 100 mM and 200 mM of sodium chloride) and two-time points (T0, at the beginning of the experiment; T1, at the end of the experiment) were used. Metabarcoding data were then coupled with pigment and proline analyses to better describe the olive tree response to salinity stress. Lecciana; "Lc" Leccino; "Lcc" Oliana; "Og" Frantoio; "Fr" <br> The library acronym includes the cultivar (e. g., Lc), the time point (e. g., t1), the treatment (e. g., 200), and the replicate (e.g., 3).
DOI: 10.6084/m9.figshare.28795619.v1
title: Supplemental Materials for <b>The birth of the Ganzi-Litang embryonic ocean in the Eastern Tibetan Plateau</b>

description: This dataset contains an Excel table dateset and a Word supporting figures.
DOI: 10.6084/m9.figshare.7999514.v1
title: FastQC report for Zosterops borbonicus and Z. pallidus reads

description: FastQC report for Zosterops borbonicus and Z. pallidus reads before and after cleaning using Trimmomatic (v.033).<br>
DOI: 10.6084/m9.figshare.12529316.v1
title: Supplementary Material for: Attention Deficit/Hyperactivity Disorder and Global Severity Profiles in Treatment-Seeking Patients with Substance Use Disorders

description: <b><i>Introduction:</i></b> Comorbid attention deficit/hyperactivity disorder (ADHD) is present in 15–25% of all patients seeking treatment for substance use disorders (SUDs). Some studies suggest that comorbid ADHD increases clinical severity related to SUDs, other psychiatric comorbidities, and social impairment, but could not disentangle their respective influences. <b><i>Objectives:</i></b> To investigate whether comorbid adult ADHD in treatment-seeking SUD patients is associated with more severe clinical profiles in these domains assessed altogether. <b><i>Methods:</i></b> Treatment-seeking SUD patients from 8 countries (<i>N =</i> 1,294: 26% females, mean age 40 years [SD = 11 years]) were assessed for their history of DSM-IV ADHD, SUDs, and other psychiatric conditions and sociodemographic data. SUD patients with and without comorbid ADHD were compared on indicators of severity across 3 domains: addiction (number of SUD criteria and diagnoses), psychopathological complexity (mood disorders, borderline personality disorder, lifetime suicidal thoughts, or behavior), and social status (education level, occupational and marital status, and living arrangements). Regression models were built to account for confounders for each severity indicator. <b><i>Results:</i></b> Adult ADHD was present in 19% of the SUD patients. It was significantly associated with higher SUD severity, more frequent comorbid mood or borderline personality disorder, and less frequent “married” or “divorced” status, as compared with the absence of comorbid ADHD. ADHD comorbidity was independently associated with a higher number of dependence diagnoses (OR = 1.97) and more psychopathology (OR = 1.5), but not marital status. <b><i>Conclusions:</i></b> In treatment-seeking SUD patients, comorbid ADHD is associated with polysubstance dependence, psychopathological complexity, and social risks, which substantiates the clinical relevance of screening, diagnosing, and treating ADHD in patients with SUDs.
DOI: 10.6084/m9.figshare.23171333.v1
title: cell type-specific marker genes

description: This is the set of marker genes for the example using SPADE algorithm.
DOI: 10.6084/m9.figshare.1564737.v1
title: individual data

description: The above data includes agreed patients' individual preprocessed fMRI images. NC:control group(15); Stroke:stroke group(13). <strong>Image Acquisition</strong> All participants were scanned using a 3.0T MR scanner (Philips Achieva Magnetom Avanto, Amsterdam Netherlands) . T2* weighted R-fMRI data were acquired using an echo-planar imaging pulse sequence: 33 axial slices; repetition time (TR) = 2000 ms; echo time (TE) = 30 ms; slice thickness = 3.5 mm; gap = 0.7 mm; flip angle (FA) = 90°; matrix = 64×64; field of view (FOV) = 200 × 200 mm2. During data acquisition, participants were asked to lie quietly in the scanner with their eyes closed. A total of 240 volumes were obtained for each participant. <strong>Data Processing</strong> R-fMRI data preprocessing was performed with the GRETNA toolbox(http://www.nitrc.org/projects/gretna/) based on the SPM8 (http://www.fil.ion.ucl.ac.uk/spm/software/spm8/). After removal of the first 5 volumes, the functional images were first corrected for time offsets between slices and geometrical displacements due to head movement. The corrected functional data were then normalized to the Montreal Neurological Institute space using an optimum 12-parameter affine transformation and non-linear deformations and then resampled to a 3-mm isotropic resolution. The resulting images were further underwent spatial smoothing (Gaussian kernel with a full width at half maximum = 6 mm), linear detrend ensured the comparability of our results and those of the existing literature.
DOI: 10.6084/m9.figshare.24637164.v1
title: Sleep Quality Data

description: The Objective Sleep Quality of Post-Stroke Patients Using the Wearable Intelligent Sleep Monitor
DOI: 10.17632/d8h8wrwbyj
title: Data for: Effects of Particle size of Inhaled Corticosteroid on the Voice

description: Data for Ultrafine Particle Size and Fine Particle Size of Corticosteroid Inhaler
DOI: 10.6084/m9.figshare.2069716.v1
title: Cell cycle-dependent changes in H3K56ac in human cells

description: The incorporation of histone H3 with an acetylated lysine 56 (H3K56ac) into the nucleosome is important for chromatin remodeling and serves as a marker of new nucleosomes during DNA replication and repair in yeast. However, in human cells, the level of H3K56ac is greatly reduced, and its role during the cell cycle is controversial. Our aim was to determine the potential of H3K56ac to regulate cell cycle progression in different human cell lines. A significant increase in the number of H3K56ac foci, but not in H3K56ac protein levels, was observed during the S and G2 phases in cancer cell lines, but was not observed in embryonic stem cell lines. Despite this increase, the H3K56ac signal was not present in late replication chromatin, and H3K56ac protein levels did not decrease after the inhibition of DNA replication. H3K56ac was not tightly associated with the chromatin and was primarily localized to active chromatin regions. Our results support the role of H3K56ac in transcriptionally active chromatin areas but do not confirm H3K56ac as a marker of newly synthetized nucleosomes in DNA replication.
DOI: 10.6084/m9.figshare.9009710.v1
title: Supplementary Material for: Defining and Evaluating Overdiagnosis in Mental Health: A Meta-Research Review

description: <b><i>Background:</i></b> Overdiagnosis is thought to be common in some mental disorders, but it has not been defined or examined systematically. Assessing overdiagnosis in mental health requires a consistently applied definition that differentiates overdiagnosis from other problems (e.g., misdiagnosis), as well as methods for quantification. <b><i>Objectives:</i></b> Our objectives were to (1) describe how the term “overdiagnosis” has been defined explicitly or implicitly in published articles on mental disorders, including usages consistent <i>(overdefinition, overdetection)</i> and inconsistent <i>(misdiagnosis, false-positive test results, overtreatment, overtesting)</i> with accepted definitions of overdiagnosis; and (2) identify examples of attempts to quantify overdiagnosis. <b><i>Method:</i></b> We searched<b><i></i></b>PubMed through January 5, 2019. Articles on mental disorders, excluding neurocognitive disorders, were eligible if they used<b><i></i></b>the term “overdiagnosis” in the title, abstract, or text. <b><i>Results:</i></b> We identified 164 eligible articles with 193 total explicit or implicit uses of the term “overdiagnosis.” Of 9 articles with an explicit definition, only one provided a definition that was partially consistent with accepted definitions. Of all uses, 11.4% were consistent, and 76.7% were related to misdiagnosis and thus inconsistent. No attempts to quantify the proportion of patients who were overdiagnosed based on overdetection or overdefinition were identified. <b><i>Conclusions:</i></b> There are few examples of mental health articles that describe overdiagnosis consistent with accepted definitions and no examples of quantifying overdiagnosis based on these definitions. A definition of overdiagnosis based on diagnostic criteria that include people with transient or mild symptoms not amenable to treatment (overdefinition) could be used to quantify the extent of overdiagnosis in mental disorders.
DOI: 10.6084/m9.figshare.28245695.v1
title: <b>Data for Interactive influences of flow variation and non-native trout on vulnerable galaxiids</b>

description: Understanding the interactive effects of non-native species and alterations to flow regimes is important to combat threats to freshwater communities. We evaluated how stream drying affected interactions between vulnerable native stream-resident galaxiids and non-native trout in Aotearoa | New Zealand. We electrofished (December 2020 – March 2021) paired perennial and drying reaches in the Canterbury high country containing galaxiids (Galaxias vulgaris and G. paucispondylus) to compare abundance in streams with high abundance (n=2), low abundance (n=2) or no brown trout (n=3; Salmo trutta). These data give the abundance in various metrics for these reaches sampled from electrofishing in the austral summer of 2020-2021. The results of this study are reported in Olivia R. Hore, Jonathan D. Tonkin, Nixie C. Boddy, and Angus R. McIntosh (2025) Flow matters: Unravelling the interactive influences of flow variation and non-native trout on vulnerable galaxiids. River Research and Applications.
DOI: 10.6084/m9.figshare.19209699.v1
title: Digital technologies for social engagement (Responses)

description: This inter-disciplinary study used a mixed-method approach to understand the use of digital tools for engagement in remote learning during the Covid-19 pandemic at a University of Technology (UoT). A questionnaire consisting of closed and open questions was used to collect data from four academic departments at UoT: Media, Retail and Business Management, Entrepreneurship and Food Science. In this study, eighty-eight (88) students completed the online survey.
DOI: 10.6084/m9.figshare.22183714.v1
title: Mobile phones and Twitter data]{Explaining population variation after the \\2016 Central Italy earthquake based on \\Call Data Records and Twitter

description: The code and the dataset allow to perform the three Poisson regression analyses.
DOI: 10.15468/dl.3zpmty
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Bombylius discolor Mikan, 1796"
 ]
}

 The dataset includes 45 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009352-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.1269193.v1
title: Blue Gram Stain images from three cross-contamination edge wells of a Virtual Colony Count assay at 160x, 400x, or 1600x

description: Raw data for quantification of polysaccharides fixed to Gram stained slides using lactophenol cotton blue and digital image processing.
DOI: 10.6084/m9.figshare.17111321.v1
title: Supplementary Material for: Testosterone Therapy for Late-Onset Hypogonadism Improves Erectile Function: A Systematic Review and Meta-Analysis

description: <b><i>Introduction:</i></b> Randomized controlled trials (RCTs) of testosterone therapy (TTh) for late-onset hypogonadism are systematically reviewed and a meta-analysis to assess the efficacy of TTh in improving erectile function is performed. <b><i>Methods:</i></b> The PubMed, Cochrane Library, and Web of Science databases were searched to identify RCTs published from 2007. RCTs that assessed erectile function using the erectile function domain of the International Index of Erectile Function (IIEF-EFD) were included in the meta-analysis. <b><i>Results:</i></b> The systematic review included 18 RCTs and the meta-analysis included 6 studies that enrolled a total of 1,458 patients. The overall meta-analysis revealed that the IIEF-EFD score was significantly improved in the TTh group compared with the placebo group (mean difference 1.86; 95% confidence interval 1.01–2.72; <i>p</i> &lt; 0.0001). Compared with patients receiving placebo, there was a significant improvement in the IIEF-EFD of patients who received TTh using testosterone gel, those who received TTh for over 30 weeks, and those without diabetes mellitus or metabolic syndrome. <b><i>Conclusion:</i></b> TTh achieved a significant improvement in the IIEF-EFD score of hypogonadal men compared with placebo, especially in those who received testosterone gel, were treated for over 30 weeks, and had no comorbidities.
DOI: 10.6084/m9.figshare.22193299.v1
title: Supplementary Material for: Customized Citrate Anticoagulation versus No Anticoagulant in Continuous Venovenous Hemofiltration in Critically Ill Patients with Acute Kidney Injury: A Prospective Randomized Controlled Trial

description: <b><i>Introduction:</i></b> The use of anticoagulants during continuous renal replacement therapy (CRRT) is essential. Regional citrate anticoagulation (RCA) is recommended rather than systemic heparinization to prolong the filter’s lifespan in patients at high risk of bleeding. However, commercial citrate is expensive and may not be available in resource-limited areas. The objective of this study is comparing filter life between our locally made customized RCA and no anticoagulation. The primary outcomes were the first circuit life in hours and the number of filters used within the first 72 h of therapy. <b><i>Methods:</i></b> We conducted a single-center prospective randomized controlled trial in critically ill patients requiring CRRT. The participants were randomized to receive continuous venovenous hemofiltration (CVVH) with either customized RCA or no anticoagulant. <b><i>Results:</i></b> Of 76 patients, 38 were randomized to receive customized RCA and 38 to receive CVVH without anticoagulant. There was no significant difference in baseline characteristics between the two groups. Compared to anticoagulant-free group, the median circuit life of customized RCA group was significantly longer [44.9 (20.0, 72.0) vs. 14.3 (7.0, 22.0) hours; <i>p</i> &lt; 0.001]. The number of filters used within 72 h was significant lower [2.0 (1.0, 2.0) vs. 2.5 (1.0, 3.0); <i>p</i> &lt; 0.015]. RCA was prematurely discontinued in 5 patients due to citrate accumulation (2 cases) and severe metabolic acidosis requiring higher dose of CVVH (3 cases). No differences in bleeding complications were observed (<i>p</i> = 0.99). <b><i>Conclusion:</i></b> Customized citrate-based replacement solution improved filter survival in CVVH compared to anticoagulant-free strategy. This regimen is safe, feasible, and suitable for low- to middle-income countries.
DOI: 10.6084/m9.figshare.23937978.v1
title: CMPD

description: The Compound Matrix-based Project Database (CMPD) collects and consolidates the most frequently used project databases.
DOI: 10.17632/74298ygyg8
title: Supplementary Material – Restricted Repetitive Behaviors in Adolescent Males with Autism: Volatility in Brain Functional Connectivities

description: This dataset comprises all output data (Matlab R2018b workspace - details in 'Dataset Description File.pdf') and supplementary material for a study on subtypes of restricted, repetitive and stereotypical behaviors (RRBs) in adolescent males with autism spectrum disorder (ASD), from the viewpoint of the dynamics of brain functional connectivities (FCs). 

The study uses data from the ABIDE-II repository and Repetitive Behavior Scale-Revised (RBS-R) metrics, to form two ASD groups with tightly controlled demographics; one comprises subjects with scores above threshold for the self-injurious behaviors (SIBs) subscale, and the other subjects with scores below threshold for SIBs, but above threshold for at least one of the other subscales (stereotyped, compulsive, ritualistic, insistence on sameness, restricted interests). The dynamics of the coherence for FCs across distinct frequency bands are compared against matched controls, using a novel volatility measure computed in time-frequency space. We find statistically significant differences, on average, in the volatility of a relatively small set of FCs, most mapping to either the default mode network or the cerebellum, in the mid- and high-frequency bands, and yielding higher volatility in subjects with high levels of SIBs. Results suggest a distinct underlying profile for SIBs involving multiple brain regions associated with rewards and emotions processing. The work contributes to the identification of neural substrates potentially underlying behavioral subtypes, and may help target interventions.
DOI: 10.6084/m9.figshare.17086385.v1
title: Interview Guide

description: interview guide are the questions participants responded to on mental health information seeking behaviour
DOI: 10.6084/m9.figshare.19337732.v1
title: Code Table

description: Code data set generated from a systematic review of arguments and reasons found in organoid ethics literature. <br> Data for: <br> Barnhart, A. J. & Dierickx, K. (2022) The Many Moral Matters of Organoid Models: A systematic review of reasons. <em>Medicine, Health Care and Philosophy</em>. [Online] 25 (3), 545–560.<br>
DOI: 10.6084/m9.figshare.19519801.v5
title: COVID 19 vaccine in Ménière's disease

description: The association between reporting adverse vaccination effects in those with a history of audiovestibular difficulties is unknown. To examine this the Finnish Ménière Federation sent a survey to their members. 333 members responded to this survey. <br> Additional details about the data: <strong>WHO created the data:</strong> Finnish Ménière Federation. <br> <strong>WHAT the data files contain:</strong> Dataset, Questionnire in English and Finnish. <br> <strong>WHEN the data was generated:</strong> October 2021. <br> <strong>WHERE the data were generated:</strong> This study was conducted over the Internet by sending an email to members of Finnish Ménière Federation. <br> <strong>WHY the data were generated:</strong> This data was generated as a part of a survey from the patient association. <br> <strong>HOW the data were generated:</strong> This data was generated by means of administering the online questionnaire.