cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13324807
title: Lab_34_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards

description: Lab_34_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards - mzML files
This dataset is part of the ILS Ceramide Ring Trial. The suffix 'SOP' indicates that the results were obtained using the recommended and standard operating procedure protocol to prepare and measure all samples, while the suffix 'OTHER' indicates that the corresponding lab prepared and measured the samples according to their own internal protocol. Please check the corresponding mapping file 'ILS-Ceramide-Ring-Trial-Datasets.csv' in the ILS Ceramide Ring Trial record for a mapping of the originally submitted lab reports and the final lab number as reported in the manuscript.
All reports together with the code for analysis and visualization, reproducing the figures in the manuscript, are available under the following doi: https://zenodo.org/doi/10.5281/zenodo.10081970. This links to releases of the following GitHub repository: https://github.com/lifs-tools/ils-ceramide-ring-trial. The archived version of the lab reports, workflow source code and manuscript visualizations are also available here.
Please note that most datasets have been acquired in MRM mode, such that the msconvert conversion to mzML has stored the MRM data in the chromatogram part of the mzML files. 
The msconvert Docker container (Proteowizard release: 3.0.24172 (63d00b1), build date Jun 202 2024 20:01:14) was used with the native vendor libraries / peak picking for conversion, using default arguments. m/z values were encoded with 64 bit (default), while intensity values were encoded with 32 bit (default). All binary data was zlib-compressed.
DOI: 10.5281/zenodo.13732469
title: Lab_33_OTHER - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards

description: Lab_33_OTHER - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards - mzML files
This dataset is part of the ILS Ceramide Ring Trial. The suffix 'SOP' indicates that the results were obtained using the recommended and standard operating procedure protocol to prepare and measure all samples, while the suffix 'OTHER' indicates that the corresponding lab prepared and measured the samples according to their own internal protocol. Please check the corresponding mapping file 'ILS-Ceramide-Ring-Trial-Datasets.csv' in the ILS Ceramide Ring Trial record for a mapping of the originally submitted lab reports and the final lab number as reported in the manuscript.
All reports together with the code for analysis and visualization, reproducing the figures in the manuscript, are available under the following doi: https://zenodo.org/doi/10.5281/zenodo.10081970. This links to releases of the following GitHub repository: https://github.com/lifs-tools/ils-ceramide-ring-trial. The archived version of the lab reports, workflow source code and manuscript visualizations are also available here.
Please note that most datasets have been acquired in MRM mode, such that the msconvert conversion to mzML has stored the MRM data in the chromatogram part of the mzML files. 
The msconvert Docker container (Proteowizard release: 3.0.24172 (63d00b1), build date Jun 202 2024 20:01:14) was used with the native vendor libraries / peak picking for conversion, using default arguments. m/z values were encoded with 64 bit (default), while intensity values were encoded with 32 bit (default). All binary data was zlib-compressed.
DOI: 10.15468/dl.zvm9hk
title: Occurrence Download

description: A dataset containing 6101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is one of (Idaho, Utah, Nevada, Arizona, New Mexico, CAlifornia, Texas)",
 "TaxonKey is Diadophis punctatus (Linnaeus, 1766)"
 ]
}

 The dataset includes 6101 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006071-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tx6ym5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mallomys gunung Flannery, Aplin & Groves, 1989)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006072-240906103802322/datasets/export for details.
DOI: 10.15468/dl.t2wtu3
title: Occurrence Download

description: A dataset containing 605 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Maxomys whiteheadi (Thomas, 1894))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 605 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006073-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hkr3at
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Maxomys rajah (Thomas, 1894))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 140 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006074-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9d6svk
title: Occurrence Download

description: A dataset containing 306 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Zyzomys pedunculatus (Waite, 1896))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 306 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006075-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.actgxy
title: Occurrence Download

description: A dataset containing 652 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Zyzomys maini Kitchener, 1989)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 652 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006076-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13732478
title: ESG data of Chinese listed companies
DOI: 10.5281/zenodo.13732479
title: ESG data of Chinese listed companies
DOI: 10.15468/dl.q7jb7q
title: Occurrence Download

description: A dataset containing 387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Zyzomys palatalis Kitchener, 1989, Zyzomys palatilis Kitchener, 1989)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 387 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006077-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6qbemy
title: Occurrence Download

description: A dataset containing 14164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Araucaria angustifolia (Bertol.) Kuntze"
 ]
}

 The dataset includes 14164 records from 209 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006078-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p9cwsq
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tarsomys echinatus Musser & Heaney, 1992)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006079-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ugmv44
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Diplothrix legata (Thomas, 1906))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 17 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006080-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9346539
title: Vietnam SARS-CoV-2 | COVID-19 Data
DOI: 10.15468/dl.9276s9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Millardia kondana Mishra & Dhanda, 1975)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006081-240906103802322/datasets/export for details.
DOI: 10.15468/dl.nrfum3
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Echiothrix leucura Gray, 1867)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006082-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nxfkjs
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trichechus inunguis (Natterer, 1883), Trichecus inunguis (Natterer, 1883))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 24 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006083-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f5dcpj
title: Occurrence Download

description: A dataset containing 15827 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tayassu pecari (Link, 1795))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 15827 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006084-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.esk6be
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Porcula salvania Hodgson, 1847)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006085-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qc6ajt
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sus verrucosus Boie, 1832, Sus verrucosus Müller, 1840, Sus verrucosus Linnaeus, 1758)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 26 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006086-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j9hw8c
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sus cebifrons Heude, 1888, Sus cebifrons Linnaeus, 1758)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 37 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006087-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8txy3e
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sus philippensis Nehring, 1886, Sus philippensis Linnaeus, 1758)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 54 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006088-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pxjx8h
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sus oliveri Groves, 1997, Sus oliveri Linnaeus, 1758)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006089-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t7gcma
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Babyrousa celebensis (Deninger, 1909))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 31 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006090-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9zx5j
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Babyrousa togeanensis (Sody, 1949))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006091-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5nw9eh
title: Occurrence Download

description: A dataset containing 486 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cephalorhynchus hectori (P.-J.van Bénéden, 1881))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 486 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006092-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5sgb92
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Equus africanus Heuglin & Fitzinger, 1866, Equus americanus Leidy, 1847)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006093-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yzjdv5
title: Occurrence Download

description: A dataset containing 2899 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tapirus bairdii (Gill, 1865))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2899 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006094-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m6z7qk
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tapirus indicus Desmarest, 1819, Taperus indicus Viraktamath & Webb, 2018)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 76 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006096-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10919877
title: Predicted protein-protein interactions of the human tyrosine kinase Lck by AF2Complex

description: Structural models and Supplementary data described in the publication:

Predicting protein interactions of the kinase Lck critical to T cell modulation

Structure (Cell Press), 2024

Reference Authors: Mu Gao and Jeffrey Skolnick

screening_results -- Virtual PPI screening results of the protein kinase Lck (SH3-SH2 domains as the bait).predicted structural models.zip -- Compressed structural models described in the publication.af2c_input_features -- Input features used to predict protein complex models with AF2Complex.
DOI: 10.5281/zenodo.10919878
title: Predicted protein-protein interactions of the human tyrosine kinase Lck by AF2Complex

description: Structural models and Supplementary data described in the publication:

Predicting protein interactions of the kinase Lck critical to T cell modulation

Structure (Cell Press), 2024

Reference Authors: Mu Gao and Jeffrey Skolnick

screening_results -- Virtual PPI screening results of the protein kinase Lck (SH3-SH2 domains as the bait).predicted structural models.zip -- Compressed structural models described in the publication.af2c_input_features -- Input features used to predict protein complex models with AF2Complex.
DOI: 10.15468/dl.r7ayw2
title: Occurrence Download

description: A dataset containing 792 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schloenbachiidae"
 ]
}

 The dataset includes 792 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006097-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4v2ejg
title: Occurrence Download

description: A dataset containing 1899 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tapirus pinchaque (Roulin, 1829))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1899 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006098-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fqk3ne
title: Occurrence Download

description: A dataset containing 11424 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tapirus terrestris (Linnaeus, 1758))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11424 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006099-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ft2cp
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bunolagus monticularis (Thomas, 1903))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 34 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006100-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.