DOI: 10.5281/zenodo.6043523
title: Data for Embryo-scale epithelial buckling forms a propagating furrow that initiates gastrulation

description: This is the data and code corresponding to Embryo-scale epithelial buckling forms a propagating furrow that initiates gastrulation, <em>Nature Comms.</em> <strong>13</strong>:3348. <strong>Code</strong> The file Surface_Evolver_script.txt is ... the Surface Evolver script, use with Ken Brakke's Surface Evolver <strong>Data sources</strong> The figure panels are based on the datafiles listed below, visualised either with Ken Brakke's Surface Evolver or with gnuplot 5. When the datafiles listed do not contain the primary data, they contain a commented last line which is the command line for the software datamerge to generate it from other datafiles found in the Data_sources subdirectory. <strong>Figure 1</strong> Fig. 1c : data provided in <code>data_for_Fig_1g.tsv</code> Fig. 1f : visualisation from Surface Evolver file <code>Young100dixPoisson000Step013.dmp</code> Fig. 1g : <code>myosin_profile_us_only.pdf</code> generated with gnuplot script <code>myosin_profile.plot</code> <strong>Figure 2</strong> Fig. 2a : <code>strain_profile_100_0_time_013.pdf</code> generated with gnuplot script <code>strain_profile.plot</code> Fig. 2b : visualisation from Surface Evolver file <code>Young100dixPoisson000Step013.dmp</code> Fig. 2c : <code>stress_profile_100_0_time_013.pdf</code> gnuplot script <code>stress_profile.plot</code> Fig. 2d : visualisation from Surface Evolver file <code>Young100dixPoisson000Step063.dmp</code> <strong>Figure 3</strong> Fig. 3a : <code>myosin_area.pdf</code> generated with gnuplot script <code>area_AP_DV_paper.plot</code> Fig. 3b : <code>area_stripes_t=-1.pdf</code> generated with gnuplot script <code>area_AP_DV_paper.plot</code> Fig. 3c : <code>only_AP_stripes_t=-1.pdf</code> generated with gnuplot script <code>area_AP_DV_paper.plot</code> Fig. 3d : <code>only_DV_stripes_t=-1.pdf</code> generated with gnuplot script <code>area_AP_DV_paper.plot</code> Fig. 3e : visualisation from Surface Evolver file <code>Young100dixPoisson000Step013.dmp Young100dixPoisson000Step063.dmp Young100dixPoisson000Step163.dmp Young100dixPoisson000Step213.dmp</code> <strong>Figure 4</strong> Fig. 4a : visualisation from Surface Evolver file <code>Young100dixPoisson000Step213.dmp</code> Fig. 4b : <code>furrow_propagation.pdf</code> generated with gnuplot script <code>furrow_propagation.plot</code> Fig. 4c : <code>rate_of_furrowing_t=3.pdf</code> generated with gnuplot script <code>furrow_propagation.plot</code> Fig. 4f : <code>curvature.pdf</code> generated with gnuplot script <code>curvature.plot</code> <strong>Figure 5</strong> Fig. 5a : visualisation from Surface Evolver file <code>Young100dixPoisson000Step013.dmp Young100dixPoisson000Step063.dmp Young100dixPoisson000Step113.dmp Young100dixPoisson000Step163.dmp Young100dixPoisson000Step213.dmp</code> Fig. 5b : visualisation from Surface Evolver file <code>Young100dixPoisson000Step013.dmp Young100dixPoisson000Step140.dmp</code> Fig. 5d : <code>stress_laserablations_profile_100_0_time_063.pdf</code> generated with gnuplot script <code>stress_profile_for_laser_ablations.plot</code> Fig. 5e : <code>laser_ablation_recoil.pdf</code> generated with gnuplot script <code>laser_ablation_recoil.plot</code> <strong>Supp Figure 1</strong> Fig. S1a : <code>time_profile_FINI_100_0.pdf</code> generated with gnuplot script <code>time_profile_stress.plot</code> Fig. S1b : visualisation from Surface Evolver file <code>Young100dixPoisson000Step013.dmp</code> Fig. S1d : visualisation from Surface Evolver file <code>Young100dixPoisson000Step063.dmp</code> Fig. S1e : <code>strain_profile_100_0_time_063.pdf</code> gnuplot script <code>strain_profile.plot</code> Fig. S1f : <code>stress_profile_100_0_time_063.pdf</code> gnuplot script <code>stress_profile.plot</code> <strong>Supp Figure 1</strong> Fig. S2a : <code>area_stripes_time_evolution.pdf</code> generated with gnuplot script <code>area_AP_DV_paper.plot</code> Fig. S2b : <code>area_stripes_time_evolution_SPIM.pdf</code> generated with gnuplot script <code>area_AP_DV_paper.plot</code> <strong>Supp Figure 3</strong> Fig. S3a : visualisation from Surface Evolver file <code>Young100dixPoisson000Step213.dmp</code> Fig. S3c : <code>AP_binned_strain.pdf</code> generated with gnuplot script <code>AP_binned_strain.plot</code> Fig. S3d : <code>furrow_propagation_experimental.pdf</code> generated with gnuplot script <code>plot_furrow.plot</code> Fig. S3e : <code>curvature_DV_indiv.pdf</code> generated with gnuplot script <code>curvature.plot</code> Fig. S3f : <code>depth_Gastrulation_ordi_Wild_Type_STITCHED_100_0.pdf</code> generated with gnuplot script <code>depth.plot</code>