cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0107061.10fu
title: SH0107061.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive115231.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive115231.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0107062.10fu
title: SH0107062.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive115232.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive115232.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0107063.10fu
title: SH0107063.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive115233.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive115233.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0107064.10fu
title: SH0107064.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive115234.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.dp7gxp
title: Occurrence Download

description: A dataset containing 14046811 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is China"
 ]
}

 The dataset includes 14046811 records from 5653 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004663-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.48187
title: Code supporting "Constructing Infinitary Quotient-Inductive Types"

description: Agda code (source and html) supporting the paper "Constructing Infinitary Quotient-Inductive Types" in 23rd International Conference on Foundations of Software Science and Computation Structures (FoSSaCS 2020), Dublin, Ireland 2020. See README file for more information.
DOI: 10.6084/m9.figshare.c.3603002_d3.v1
title: Additional file 4: of Implementation and application of a multiplex assay to detect malaria-specific antibodies: a promising tool for assessing malaria transmission in Southeast Asian pre-elimination areas

description: Results of the segmented regression analysis for assessing the stability of the antigen coupled beads per antigen. The breakpoints were estimated with the R-package ‘segmented’ and the ΔMFI-values obtained at Week (Wk) 4, Wk 8 and Wk16 were converted into percentages compared to the ΔMFI value obtained directly after coupling (Wk0).
DOI: 10.6084/m9.figshare.c.3602987_d6.v1
title: Additional file 3: of Genome-wide identification of rubber tree (Hevea brasiliensis Muell. Arg.) aquaporin genes and their response to ethephon stimulation in the laticifer, a rubber-producing tissue

description: Percent identity of the identified HbAQP gene pairs at the nucleotide and amino acid levels. (XLS 28Â kb)
DOI: 10.17863/cam.108459
title: Research data supporting "Cooperative Multi-Objective Bayesian Design Optimization"

description: Participant performance data corresponding to experiments described in "Cooperative Multi-Objective Bayesian Design Optimization". The file contains an index page summarising the data contained and a glossary of key terms. There is a separate tab for the main participant results in terms of Pareto set discovery. Please see the original publication for detailed descriptions of the experimental conditions and metrics.
DOI: 10.6084/m9.figshare.c.3603083_d3.v1
title: Additional file 5: of Living apart together: crosstalk between the core and supernumerary genomes in a fungal plant pathogen

description: Transposable element prototypes. (FA 98Â kb)
DOI: 10.6084/m9.figshare.c.3603083_d4.v1
title: Additional file 4: of Living apart together: crosstalk between the core and supernumerary genomes in a fungal plant pathogen

description: Conservation of the KEGG pathway for meiosis. The table lists genes belonging to the KEGG pathway for meiosis in F. graminearum (fgr04113) and their counterparts in F. poae, as well as the predicted function of the F. graminearum gene. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3603083_d5.v1
title: Additional file 17: of Living apart together: crosstalk between the core and supernumerary genomes in a fungal plant pathogen

description: List of all primers used in this study, their sequence, reference and target. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3603083_d6.v1
title: Additional file 13: of Living apart together: crosstalk between the core and supernumerary genomes in a fungal plant pathogen

description: List of 104 gene duplications on the supernumerary chromosomes. Gene identifier for the core and supernumerary gene(s) are given as well as the length of the AA similarity between them. Locations of the duplicated genes on the supernumerary genome are given. For isolates 2548, 7555 and bfb0173, the presence of the duplicated genes was assessed by HiSeq read mapping. “yes” indicates the same duplication is present, “no” indicates that it is absent. Parentheses indicate inconclusive read mapping. Finally the functional annotation of the gene on the core that was duplicated, is detailed. Likely double assemblies are commented upon in the final column. (XLSX 1881 kb)
DOI: 10.6084/m9.figshare.c.3603083_d7.v1
title: Additional file 3: of Living apart together: crosstalk between the core and supernumerary genomes in a fungal plant pathogen

description: List of 60â  F. poae isolates used for diagnostic PCRs. The origin, host and year of isolation are given. Mating type and insertion results are provided, methodology of the diagnostic PCRs are described elsewhere. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3603101_d2.v1
title: Additional file 5: of The relationship between poison frog chemical defenses and age, body size, and sex

description: Data table including voucher numbers, sex, maturity, skin mass, alkaloid richness, alkaloid quantity, bufotenine quantity, age, and snout–vent length. (TXT 3 kb)
DOI: 10.6084/m9.figshare.c.3603083_d8.v1
title: Additional file 8: of Living apart together: crosstalk between the core and supernumerary genomes in a fungal plant pathogen

description: RIP-like mutations on the supernumerary chromosomes. Three elements that have RIP-like copies on the supernumerary genome. The intact element is compared with RIPped copies on the core chromosomes, and “RIP-like copies” (unknown) on the supernumerary genome. For the third element, there is no intact in the genome. The total number of transitions and transversions compared to a reference (ref) is given, as welll as the transition/transversion ratio, which is lower for the “RIP-like copies” on the supernumerary genome. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3603101_d3.v1
title: Additional file 6: of The relationship between poison frog chemical defenses and age, body size, and sex

description: Commands used to read the data table and perform non-parametric multiple regression analyses. (TXT 2 kb)
DOI: 10.17863/cam.64389
title: Research data and code supporting "Rideaux & Welchman (2021) Exploring and explaining properties of motion processing in biological brains using a neural network - Journal of Vision"

description: This repository contains the data and code presented in "Rideaux & Welchman (2021) Exploring and explaining properties of motion processing in biological brains using a neural network - Journal of Vision". Data includes the 10 trained MotionNet_xy neural networks presented in the manuscript and example images used to train MotionNet_xy. Code includes scripts used to train and test MotionNet_xy. See the readme.txt file contained in the data_and_code folder for more information.
DOI: 10.60831/63
title: Alchemical Illustrations

description: This Dataset contains: - The scraping script for alchemical illustrations - The Book Metadata Scraper - A Dataset Documentation: Alchemical Laboratory Object Detection Annotations (YOLO8 & MS COCO Formats) - An Explanation of the Repository Contents (which file is what) - Links & Additional Resources Further Information can be found here: https://latex-ninja.com/2024/09/06/how-to-create-your-own-fine-tuning-or-training-dataset-for-computer-vision-using-supervisely/
description: This repo contains the work of Sarah Lang on annotating images from https://alchemie.hab.de/bilder for computer vision (object detection) as part of the 2024 NFDI4Memory Fair Data Fellowship, including scraping the images. HAB's alchemy portal (https://alchemie.hab.de) offers IconClass categories extended specifically to tag alchemy images. A number of book pages containing such illustrations (digitized in the project) were tagged using those categories. To make the data usable for computer vision (specifically object detection), the locations of the objects on the images need to be specified in a usable image annotation format (such as MS COCO) so they can be used to train machine learning algorithms. To make that possible, the following script allows the selection a number of those categories, then the links to all images tagged with this category will be scraped from the webpage and later downloaded.
DOI: 10.6084/m9.figshare.c.3603116_d1.v1
title: Additional file 1: Table S1. of Comparison of targeted next-generation sequencing and Sanger sequencing for the detection of PIK3CA mutations in breast cancer

description: Genomic positions and the primer sequences. (XLS 45Â kb)
DOI: 10.17863/cam.65999
title: Supporting data for figures in "Temporal fluctuation induced order in conventional superconductors"

description: Zip folder containing supporting data and .plt files used to generate figures in paper titled "Temporal fluctuation induced order in conventional superconductors". The data here is numerically generated. Each subfolder corresponds to one figure, and each contains a single .plt file used to generate the pdf with .csv and .tsv data files. The data are generated from numerical scripts using the equations found in the main text, or taken from other work as referenced in the main text. To generate a pdf from the .plt file on linux, open terminal and run "gnuplot .plt; pdflatex .tex", on windows load the .plt file in gnuplot and run, then run the TeX editor of choice on the generated .tex file. See the README for more information
DOI: 10.60893/figshare.apl.27930984
title: Supplementary Material

description: Experimental details, including sample preparation, AFM characterization, tip contamination and PDMS Young's modulus determination.
DOI: 10.60893/figshare.apl.27930984.v1
title: Supplementary Material

description: Experimental details, including sample preparation, AFM characterization, tip contamination and PDMS Young's modulus determination.
DOI: 10.6084/m9.figshare.c.3603200_d6.v1
title: Additional file 9: Table S2. of Evolutionary origin and functional divergence of totipotent cell homeobox genes in eutherian mammals

description: Human and bovine adult and developmental data used for expression profiling. Sequence Read Archive database accessions for RNA-seq datasets used for expression profiling of genes in Fig. 4b and c. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3603200_d7.v1
title: Additional file 11: Table S4. of Evolutionary origin and functional divergence of totipotent cell homeobox genes in eutherian mammals

description: Fragments per kilobase per million reads (FPKM) values after ectopic expression. FPKM mapped for all human gene models excluding transfected genes. Counts for each replicate sample and means are provided. (XLSX 4778 kb)
DOI: 10.6084/m9.figshare.c.3603230_d1.v1
title: Additional file 4: Table S4. of Trends in genome dynamics among major orders of insects revealed through variations in protein families

description: A list of the most significant expanded and contracted species-specific families (SSF) per 18 species.
DOI: 10.6084/m9.figshare.c.3603200_d8.v1
title: Additional file 3: Table S1. of Evolutionary origin and functional divergence of totipotent cell homeobox genes in eutherian mammals

description: ETCH box gene, pseudogene and retrocopy complements in placental mammal species. We classify a locus as a probable pseudogene if it contains mutations (frame shifts, stop codons and losses of splice sites) that disrupt translation initiation and/or presence of the homeodomain; we did not include C-terminal truncations but these are marked with an asterisk. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3603230_d2.v1
title: Additional file 5: Table S5. of Trends in genome dynamics among major orders of insects revealed through variations in protein families

description: A list of the 114 Root SFs that contains &gt;200 proteins from Hymenoptera or Diptera. The dominating annotations and additional proteins in the SF are listed.
DOI: 10.6084/m9.figshare.c.3603200_d9.v1
title: Additional file 12: Table S5. of Evolutionary origin and functional divergence of totipotent cell homeobox genes in eutherian mammals

description: Genes affected by ectopic expression. List of genes with differential expression triggered by ectopic expression of ETCHbox genes as determined by DESeq2. (XLSX 401 kb)
DOI: 10.6084/m9.figshare.c.3603230_d3.v1
title: Additional file 2: Table S2. of Trends in genome dynamics among major orders of insects revealed through variations in protein families

description: Comprehensive list of 3437 mapped Pfam keywords (associated with 4503 ProtoBug families).
DOI: 10.6084/m9.figshare.c.3603242_d1.v1
title: MOESM4 of Organosolv pretreatment of sorghum bagasse using a low concentration of hydrophobic solvents such as 1-butanol or 1-pentanol

description: Additional file 4. Annotation of each 2D 1H-13C HSQC NMR spectrum peak.
DOI: 10.6084/m9.figshare.c.3603362_d14.v1
title: Additional file 8: of Physiological and transcriptional analyses of developmental stages along sugarcane leaf

description: Input data (read count per gene per condition) and R code, to reproduce the differential gene expression analysis for the sugarcane leaf development segments. (BZ2 15159 kb)
DOI: 10.6084/m9.figshare.c.3603395_d5.v1
title: Additional file 3: of High throughput techniques to reveal the molecular physiology and evolution of digestion in spiders

description: Translated and annotated contig database used for proteome identification. (FAS 8034 kb)
DOI: 10.6084/m9.figshare.c.3603392_d6.v1
title: Additional file 8: of Transcriptomic network analyses of leaf dehydration responses identify highly connected ABA and ethylene signaling hubs in three grapevine species differing in drought tolerance

description: Summary table of WGCNA modules including top hub genes and gene ontologies. (XLSX 50Â kb)
DOI: 10.6084/m9.figshare.c.3603338_d15.v1
title: Additional file 18: of Imaging the mammary gland and mammary tumours in 3D: optical tissue clearing and immunofluorescence methods

description: All figures in high resolution. (ZIP 127 MB)
DOI: 10.6084/m9.figshare.c.3603395_d6.v1
title: Additional file 7: of High throughput techniques to reveal the molecular physiology and evolution of digestion in spiders

description: Quantitative transcriptome data. (XLSX 182 kb)
DOI: 10.6084/m9.figshare.c.3603392_d8.v1
title: Additional file 4: of Transcriptomic network analyses of leaf dehydration responses identify highly connected ABA and ethylene signaling hubs in three grapevine species differing in drought tolerance

description: Overrepresented GO categories of all significantly changing transcripts in response to Genotype x Treatment interaction. (XLSX 192Â kb)
DOI: 10.6084/m9.figshare.c.3603395_d7.v1
title: Additional file 11: of High throughput techniques to reveal the molecular physiology and evolution of digestion in spiders

description: Accession number or contig identification from astacin DNA sequences used for phylogenetic analysis showed in Fig. 4 (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3603395_d8.v1
title: Additional file 1: of High throughput techniques to reveal the molecular physiology and evolution of digestion in spiders

description: List of contigs after de novo assembly of RNA-seq data. (FAS 31998 kb)
DOI: 10.60893/figshare.apl.27976734
title: Clock Transitions Generated by Defects in Silica Glass - Supplementary Material

description: This Supplementary Material contains Rabi oscillation measurements, examples of coherence time measurements, an example of spectral hole-burning experiment, broadband CT characterization, a study of temperature dependence of the CT, discussion of the CPMG noise spectrum of Duran glass at and away from the CT, and details about the annealing processes.
DOI: 10.6084/m9.figshare.c.3603395_d9.v1
title: Additional file 6: of High throughput techniques to reveal the molecular physiology and evolution of digestion in spiders

description: Proteome quantification. (XLSX 279 kb)
DOI: 10.6084/m9.figshare.c.3603395_d10.v1
title: Additional file 4: of High throughput techniques to reveal the molecular physiology and evolution of digestion in spiders

description: Qualitative proteome data. (XLSX 131 kb)
DOI: 10.6084/m9.figshare.c.3603428_d2.v1
title: Additional file 4: of Invaders, natives and their enemies: distribution patterns of amphipods and their microsporidian parasites in the Ruhr Metropolis, Germany

description: Haplotypes of microsporidian isolates and accession numbers. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3603536_d1.v1
title: Additional file 9: Table S9. of Efficient generation of patient-matched malignant and normal primary cell cultures from clear cell renal cell carcinoma patients: clinically relevant models for research and personalized medicine

description: Differentially expressed genes between matched tumor tissue and VHLmut cultures. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3603545_d1.v1
title: Additional file 4: Table S4: of QTL underlying some agronomic traits in barley detected by SNP markers

description: List of 221 QTLs detected for 10 agronomic traits, their position, likelihood of odd (LOD), additive effect, explained variance and 2-LOD confidence interval. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.c.3603545_d2.v1
title: Additional file 3: Table S3: of QTL underlying some agronomic traits in barley detected by SNP markers

description: Genome mapping of SNP sequence markers on Hordeum gene index in the NCBI. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.c.3603536_d3.v1
title: Additional file 6: Table S6. of Efficient generation of patient-matched malignant and normal primary cell cultures from clear cell renal cell carcinoma patients: clinically relevant models for research and personalized medicine

description: Differrentially expressed networks between VHLmut and VHLwt cell cultures. (XLS 66 kb)
DOI: 10.6084/m9.figshare.c.3603545_d3.v1
title: Additional file 1: Table S1. of QTL underlying some agronomic traits in barley detected by SNP markers

description: Analysis of variance on 10 agronomic traits in DH lines. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3603536_d4.v1
title: Additional file 4: Table S4. of Efficient generation of patient-matched malignant and normal primary cell cultures from clear cell renal cell carcinoma patients: clinically relevant models for research and personalized medicine

description: Doubling times of VHLmut and VHLwt ccRCC cultures. (XLS 25 kb)