cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12580853
title: Additional file 4 of Expression of serotonin 1A and 2A receptors in molecular- and projection-defined neurons of the mouse insular cortex

description: Additional file 4: TableS1. Raw numbers of CTB-labelled cells and 5-HT1A+ or 2A+ CTB-labelled cells in the anterior and posterior insula.
DOI: 10.6084/m9.figshare.12580853.v1
title: Additional file 4 of Expression of serotonin 1A and 2A receptors in molecular- and projection-defined neurons of the mouse insular cortex

description: Additional file 4: TableS1. Raw numbers of CTB-labelled cells and 5-HT1A+ or 2A+ CTB-labelled cells in the anterior and posterior insula.
DOI: 10.7910/dvn/cdua15
title: Replication Data for "Yes to Koch, No to Woke: Public Opinion, Free Markets, and Business Involvement in Politics"

description: Replication Data for Yes to Koch, No to Woke: Public Opinion, Free Markets, and Business Involvement in Politics
DOI: 10.6084/m9.figshare.6813725
title: Additional file 2 of Alternative empirical Bayes models for adjusting for batch effects in genomic studies

description: Mean and variance of gene expression distributions estimated from the EGFR signature and the TCGA breast cancer patient datasets. In TCGA, we used proteomics data of the patients, and binned the EGFR protein expression into 6 gradually increasing levels, partitioning all patients into 6 equal-sized groups. Mean and variances are estimated within each group. Up- and down-regulated genes are both EGFR signature genes derived by ASSIGN. The design and parameters for our simulation studies resemble the real estimates in these tables. Batch 1 represents the EGFR signature dataset with small gene variances, and a clear separation between the two condition groups in the expression of up-regulated genes. Batch 2 resembles the TCGA patient data with much larger variances than Batch 1. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.19920912
title: Additional file 15 of Gut microbiota-derived ursodeoxycholic acid from neonatal dairy calves improves intestinal homeostasis and colitis to attenuate extended-spectrum β-lactamase-producing enteroaggregative Escherichia coli infection

description: Additional file 14: Table S2. Antibiotic susceptibility analysis of E. coli 1587 strain.
DOI: 10.6084/m9.figshare.19920909.v1
title: Additional file 14 of Gut microbiota-derived ursodeoxycholic acid from neonatal dairy calves improves intestinal homeostasis and colitis to attenuate extended-spectrum β-lactamase-producing enteroaggregative Escherichia coli infection

description: Additional file 13: Table S1. Genomic analysis of DEC bacterial strain.
DOI: 10.6084/m9.figshare.19920912.v1
title: Additional file 15 of Gut microbiota-derived ursodeoxycholic acid from neonatal dairy calves improves intestinal homeostasis and colitis to attenuate extended-spectrum β-lactamase-producing enteroaggregative Escherichia coli infection

description: Additional file 14: Table S2. Antibiotic susceptibility analysis of E. coli 1587 strain.
DOI: 10.6084/m9.figshare.19920921
title: Additional file 16 of Gut microbiota-derived ursodeoxycholic acid from neonatal dairy calves improves intestinal homeostasis and colitis to attenuate extended-spectrum β-lactamase-producing enteroaggregative Escherichia coli infection

description: Additional file 15: Table S3. Sampling information of calves used in the current study.
DOI: 10.6084/m9.figshare.6813725.v1
title: Additional file 2 of Alternative empirical Bayes models for adjusting for batch effects in genomic studies

description: Mean and variance of gene expression distributions estimated from the EGFR signature and the TCGA breast cancer patient datasets. In TCGA, we used proteomics data of the patients, and binned the EGFR protein expression into 6 gradually increasing levels, partitioning all patients into 6 equal-sized groups. Mean and variances are estimated within each group. Up- and down-regulated genes are both EGFR signature genes derived by ASSIGN. The design and parameters for our simulation studies resemble the real estimates in these tables. Batch 1 represents the EGFR signature dataset with small gene variances, and a clear separation between the two condition groups in the expression of up-regulated genes. Batch 2 resembles the TCGA patient data with much larger variances than Batch 1. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.19920921.v1
title: Additional file 16 of Gut microbiota-derived ursodeoxycholic acid from neonatal dairy calves improves intestinal homeostasis and colitis to attenuate extended-spectrum β-lactamase-producing enteroaggregative Escherichia coli infection

description: Additional file 15: Table S3. Sampling information of calves used in the current study.
DOI: 10.6084/m9.figshare.19920924
title: Additional file 17 of Gut microbiota-derived ursodeoxycholic acid from neonatal dairy calves improves intestinal homeostasis and colitis to attenuate extended-spectrum β-lactamase-producing enteroaggregative Escherichia coli infection

description: Additional file 16: Table S4. Fecal metabolites of dairy calves.
DOI: 10.6084/m9.figshare.19920924.v1
title: Additional file 17 of Gut microbiota-derived ursodeoxycholic acid from neonatal dairy calves improves intestinal homeostasis and colitis to attenuate extended-spectrum β-lactamase-producing enteroaggregative Escherichia coli infection

description: Additional file 16: Table S4. Fecal metabolites of dairy calves.
DOI: 10.6084/m9.figshare.19920909
title: Additional file 14 of Gut microbiota-derived ursodeoxycholic acid from neonatal dairy calves improves intestinal homeostasis and colitis to attenuate extended-spectrum β-lactamase-producing enteroaggregative Escherichia coli infection

description: Additional file 13: Table S1. Genomic analysis of DEC bacterial strain.
DOI: 10.6084/m9.figshare.19920927
title: Additional file 18 of Gut microbiota-derived ursodeoxycholic acid from neonatal dairy calves improves intestinal homeostasis and colitis to attenuate extended-spectrum β-lactamase-producing enteroaggregative Escherichia coli infection

description: Additional file 17: Table S5. Fecal metabolites rank of random forest in dairy calves.
DOI: 10.6084/m9.figshare.19920927.v1
title: Additional file 18 of Gut microbiota-derived ursodeoxycholic acid from neonatal dairy calves improves intestinal homeostasis and colitis to attenuate extended-spectrum β-lactamase-producing enteroaggregative Escherichia coli infection

description: Additional file 17: Table S5. Fecal metabolites rank of random forest in dairy calves.
DOI: 10.48597/vtwu-wked
title: Measurement of pH at Valentia Observatory

description: Measurement of pH at Valentia Observatory
DOI: 10.48597/vwdv-j3us
title: Measurement of pH at Johnstown Castle

description: Measurement of pH at Johnstown Castle
DOI: 10.48597/vz2g-m4tp
title: Measurement of Chloride at Malin Head

description: Measurement of Chloride at Malin Head
DOI: 10.48597/wett-tyaz
title: Measurement of OC/EC and inorganics in air and particle phase at Peyrusse Vieille

description: Measurement of OC/EC and inorganics in air and particle phase at Peyrusse Vieille
DOI: 10.48597/wx9j-sqw2
title: Measurement of Sulphate_total at Carnsore Point

description: Measurement of Sulphate_total at Carnsore Point
DOI: 10.48597/x3q3-wawb
title: Measurement of Aerosol_optical_depth at Sodankylä

description: Measurement of Aerosol_optical_depth at Sodankylä
DOI: 10.48597/x9wh-hrj3
title: Measurement of Potassium at Carnsore Point

description: Measurement of Potassium at Carnsore Point
DOI: 10.48597/xtkx-bsmm
title: Measurement of PAHs (polycyclic aromatic hydrocarbons) at Revin

description: Measurement of PAHs (polycyclic aromatic hydrocarbons) at Revin
DOI: 10.48597/xxqb-7dcr
title: Measurement of OC/EC and inorganics in air and particle phase at Revin

description: Measurement of OC/EC and inorganics in air and particle phase at Revin
DOI: 10.48597/y5ju-4fp6
title: Measurement of Pm25_mass at Vilsandi

description: Measurement of Pm25_mass at Vilsandi
DOI: 10.48597/ya3u-275s
title: Measurement of Pm25_mass at Vilsandi

description: Measurement of Pm25_mass at Vilsandi
DOI: 10.48597/ydbv-cjj8
title: Measurement of Sulphate_total at Carnsore Point

description: Measurement of Sulphate_total at Carnsore Point
DOI: 10.48597/2ham-end3
title: Measurement of Ammonia at High Muffles

description: Measurement of Ammonia at High Muffles
DOI: 10.48597/33wu-z42m
title: Measurement of Ammonia at Lough Navar

description: Measurement of Ammonia at Lough Navar
DOI: 10.48597/86xu-wb6t
title: Measurement of Ammonium at High Muffles

description: Measurement of Ammonium at High Muffles
DOI: 10.48597/8a84-4sym
title: Measurement of Benzo_e_pyrene at High Muffles

description: Measurement of Benzo_e_pyrene at High Muffles
DOI: 10.48597/8m3v-mmys
title: Measurement of Nitrate at Glen Saugh

description: Measurement of Nitrate at Glen Saugh
DOI: 10.48597/8u6z-3rjc
title: Measurement of Cyclopenta_cd_pyrene at High Muffles

description: Measurement of Cyclopenta_cd_pyrene at High Muffles
DOI: 10.6084/m9.figshare.6813740
title: Additional file 3 of Alternative empirical Bayes models for adjusting for batch effects in genomic studies

description: Comparison of P-values for applying robust and non-robust F tests on the four experimental datasets. (XLSX 12 kb)
DOI: 10.48597/cna2-qtva
title: Measurement of Dibenzo_ah_anthracene at High Muffles

description: Measurement of Dibenzo_ah_anthracene at High Muffles
DOI: 10.6084/m9.figshare.6813740.v1
title: Additional file 3 of Alternative empirical Bayes models for adjusting for batch effects in genomic studies

description: Comparison of P-values for applying robust and non-robust F tests on the four experimental datasets. (XLSX 12 kb)
DOI: 10.48597/crmb-a4jw
title: Measurement of Ammonium at Lough Navar

description: Measurement of Ammonium at Lough Navar
DOI: 10.48597/d55m-xy8e
title: Measurement of Nitric_acid at Yarner Wood

description: Measurement of Nitric_acid at Yarner Wood
DOI: 10.48597/dnwj-n4ze
title: Measurement of Ozone at Svratouch

description: Measurement of Ozone at Svratouch
DOI: 10.48597/emvx-czkg
title: Measurement of Nitrate at Yarner Wood

description: Measurement of Nitrate at Yarner Wood
DOI: 10.48597/fdhx-phd6
title: Measurement of Benzo_j_fluoranthene at High Muffles

description: Measurement of Benzo_j_fluoranthene at High Muffles
DOI: 10.48597/gtfn-ujt7
title: Measurement of Benzo_k_fluoranthene at High Muffles

description: Measurement of Benzo_k_fluoranthene at High Muffles
DOI: 10.48597/h9b8-9uqd
title: Measurement of Precipitation_amount at Yarner Wood

description: Measurement of Precipitation_amount at Yarner Wood
DOI: 10.48597/hy5h-bq38
title: Measurement of Ammonia at Glen Saugh

description: Measurement of Ammonia at Glen Saugh
DOI: 10.48597/jkkw-kcwr
title: Measurement of Perylene at High Muffles

description: Measurement of Perylene at High Muffles
DOI: 10.48597/jr2c-d68k
title: Measurement of Benzo_b_fluoranthene at High Muffles

description: Measurement of Benzo_b_fluoranthene at High Muffles
DOI: 10.21942/uva.24560293
title: <b>Resolving Multi-Asperity Contacts at the Nanoscale through Super-Resolution Fluorescence Imaging</b>

description: The raw data for the manuscript :<br>Begüm Demirkurt, Dina Petrova, Dharmendar Kumar Sharma, Martin Vacha, Bart Weber, Daniel Bonn, and Albert M. Brouwer,<br>Resolving Multi-Asperity Contacts at the Nanoscale through Super-Resolution Fluorescence Imaging<br>The Journal of Physical Chemistry Letters, 2024 DOI: 10.1021/acs.jpclett.3c02799
DOI: 10.21942/uva.24560293.v2
title: <b>Resolving Multi-Asperity Contacts at the Nanoscale through Super-Resolution Fluorescence Imaging</b>

description: The raw data for the manuscript :<br>Begüm Demirkurt, Dina Petrova, Dharmendar Kumar Sharma, Martin Vacha, Bart Weber, Daniel Bonn, and Albert M. Brouwer,<br>Resolving Multi-Asperity Contacts at the Nanoscale through Super-Resolution Fluorescence Imaging<br>The Journal of Physical Chemistry Letters, 2024 DOI: 10.1021/acs.jpclett.3c02799
DOI: 10.48597/knkd-a3dr
title: Measurement of Benzo_a_pyrene at High Muffles

description: Measurement of Benzo_a_pyrene at High Muffles
DOI: 10.21942/uva.24560293.v1
title: Resolving Multi-Asperity Contacts at the Nanoscale Through Super-Resolution Fluorescence Imaging

description: The raw data for the manuscript :
  
Begüm Demirkurt, Dina Petrova, Dharmendar Kumar Sharma, Martin Vacha, Bart Weber, Daniel Bonn, and Albert M. Brouwer,
  
Resolving Multi-Asperity Contacts at the Nanoscale Through Super-Resolution Fluorescence Imaging
DOI: 10.48597/kp3n-8vtv
title: Measurement of Ammonium at Glen Saugh

description: Measurement of Ammonium at Glen Saugh
DOI: 10.48597/kt4m-5kwb
title: Measurement of Nitrate at High Muffles

description: Measurement of Nitrate at High Muffles
DOI: 10.48597/kvjj-8a25
title: Measurement of Precipitation_amount at Heigham Holmes

description: Measurement of Precipitation_amount at Heigham Holmes
DOI: 10.48597/kxuj-esdm
title: Measurement of Benzo_ghi_perylene at High Muffles

description: Measurement of Benzo_ghi_perylene at High Muffles
DOI: 10.48597/mbgu-7846
title: Measurement of Nitrate at Lough Navar

description: Measurement of Nitrate at Lough Navar
DOI: 10.48597/mfhn-mfdd
title: Measurement of Precipitation_amount at Banchory

description: Measurement of Precipitation_amount at Banchory
DOI: 10.48597/qu6m-qkqz
title: Measurement of Ammonium at Yarner Wood

description: Measurement of Ammonium at Yarner Wood
DOI: 10.48597/rf8k-793q
title: Measurement of Ammonia at Yarner Wood

description: Measurement of Ammonia at Yarner Wood
DOI: 10.6084/m9.figshare.12056628
title: Upregulation of IL-10 expression inhibits the proliferation of human periodontal ligament stem cells

description: Abstract: The abnormal increase in proliferation rate of human periodontal ligament stem cells (PDLSCs) is considered to be involved in the pathogenesis of periodontitis, a disease in which the IL-10-mediated anti-inflammatory pathway plays a critical role. This study aimed to investigate the involvement of microRNA-466l in periodontitis and to explore the possible interaction between IL-10 and microRNA-466l. PDLSCs were obtained from periodontitis-affected teeth and healthy control teeth. The expression of microRNA-466l and IL-10 mRNA was measured in PDLSCs using RT-qPCR. The proliferation ability of PDLSCs was analyzed using CCK-8 assays. Overexpression of microRNA-466l in a PDLSC cell line was established using two different types of PDLSCs, and the effect of microRNA-466l overexpression on IL-10 expression and cell proliferation were detected by western blot and CCK-8 assays, respectively. We found that expression levels of microRNA-466l and IL-10 mRNA were significantly lower (P &lt; 0.05) in PDLSCs derived from periodontitis-affected teeth compared to those derived from healthy teeth. However, the cell proliferation ability was significantly higher in the PDLSCs derived from periodontitis-affected teeth. Meanwhile microRNA-466l overexpression decreased cell proliferation rates of both types of PDLSCs and upregulated IL-10 expression. Together, these data suggest that microRNA-466l can upregulate IL-10 and reduce the proliferation rate of PDLSCs.
DOI: 10.48597/tdam-euax
title: Measurement of Nitric_acid at High Muffles

description: Measurement of Nitric_acid at High Muffles
DOI: 10.6084/m9.figshare.12056628.v1
title: Upregulation of IL-10 expression inhibits the proliferation of human periodontal ligament stem cells

description: Abstract: The abnormal increase in proliferation rate of human periodontal ligament stem cells (PDLSCs) is considered to be involved in the pathogenesis of periodontitis, a disease in which the IL-10-mediated anti-inflammatory pathway plays a critical role. This study aimed to investigate the involvement of microRNA-466l in periodontitis and to explore the possible interaction between IL-10 and microRNA-466l. PDLSCs were obtained from periodontitis-affected teeth and healthy control teeth. The expression of microRNA-466l and IL-10 mRNA was measured in PDLSCs using RT-qPCR. The proliferation ability of PDLSCs was analyzed using CCK-8 assays. Overexpression of microRNA-466l in a PDLSC cell line was established using two different types of PDLSCs, and the effect of microRNA-466l overexpression on IL-10 expression and cell proliferation were detected by western blot and CCK-8 assays, respectively. We found that expression levels of microRNA-466l and IL-10 mRNA were significantly lower (P &lt; 0.05) in PDLSCs derived from periodontitis-affected teeth compared to those derived from healthy teeth. However, the cell proliferation ability was significantly higher in the PDLSCs derived from periodontitis-affected teeth. Meanwhile microRNA-466l overexpression decreased cell proliferation rates of both types of PDLSCs and upregulated IL-10 expression. Together, these data suggest that microRNA-466l can upregulate IL-10 and reduce the proliferation rate of PDLSCs.
DOI: 10.48597/tdnp-8e7x
title: Measurement of Ozone at Svratouch

description: Measurement of Ozone at Svratouch
DOI: 10.48597/u8kc-gff3
title: Measurement of Dibenzo_ai_pyrene at High Muffles

description: Measurement of Dibenzo_ai_pyrene at High Muffles
DOI: 10.48597/v8gb-e4pz
title: Measurement of Benz_a_anthracene at High Muffles

description: Measurement of Benz_a_anthracene at High Muffles
DOI: 10.6084/m9.figshare.25335382
title: Supplementary Material for: COVID-19 Pandemic and Hospitalizations due to Abortion among 10- to 14-Year-Old Girls in Brazil

description: <b><i>Introduction:</i></b> Various non-pharmacological interventions to prevent coronavirus dissemination were implemented during the COVID-19 pandemic, including school closures. The effect of these interventions on particular aspects of people’s lives such as sexual and reproductive health outcomes has not been adequately discussed. The objective of the study was to compare the monthly hospital admission rates due to abortion before and during school closure. <b><i>Methods:</i></b> We used an interrupted time series (IES) design to estimate the hospital admission rates before and during the school closure (intervention in March 2020) period. The analysis was performed considering all girls from age groups of interest and by stratifying the age groups according to skin color (white and non-white) in which the non-white category comprised both the black and mixed ethnicity together. Coefficients and 95% confidence intervals (95% CIs) were calculated using segmented linear regression models. <b><i>Results:</i></b> The results showed positive and statistically significant coefficients, suggesting post-intervention trend changes both in the population as a whole (coefficient: 0.07; 95% CI: 0.02; 0.11) and the non-white population group (coefficient: 0.07; 95% CI: 0.03; 0.11), indicating that the monthly hospital admission rates increased over the post-intervention period compared to baseline pre-intervention period. The ITS analysis did not detect statistically significant trend changes (coefficient: 0.02; 95% CI: −0.01; 0.05) in abortion admission rates in the white girl population group. <b><i>Conclusion:</i></b> The hospitalizations in Brazil due to abortions in 10- to 14-year-old girls increased during the COVID-19 pandemic in 2020 compared to 2019, and the number of abortions was higher in the non-white population than the white population. Furthermore, recognizing that the implementation of school closure has affected the minority population differentially can help develop more effective actions to face other future similar situations.
DOI: 10.6084/m9.figshare.25335382.v1
title: Supplementary Material for: COVID-19 Pandemic and Hospitalizations due to Abortion among 10- to 14-Year-Old Girls in Brazil

description: <b><i>Introduction:</i></b> Various non-pharmacological interventions to prevent coronavirus dissemination were implemented during the COVID-19 pandemic, including school closures. The effect of these interventions on particular aspects of people’s lives such as sexual and reproductive health outcomes has not been adequately discussed. The objective of the study was to compare the monthly hospital admission rates due to abortion before and during school closure. <b><i>Methods:</i></b> We used an interrupted time series (IES) design to estimate the hospital admission rates before and during the school closure (intervention in March 2020) period. The analysis was performed considering all girls from age groups of interest and by stratifying the age groups according to skin color (white and non-white) in which the non-white category comprised both the black and mixed ethnicity together. Coefficients and 95% confidence intervals (95% CIs) were calculated using segmented linear regression models. <b><i>Results:</i></b> The results showed positive and statistically significant coefficients, suggesting post-intervention trend changes both in the population as a whole (coefficient: 0.07; 95% CI: 0.02; 0.11) and the non-white population group (coefficient: 0.07; 95% CI: 0.03; 0.11), indicating that the monthly hospital admission rates increased over the post-intervention period compared to baseline pre-intervention period. The ITS analysis did not detect statistically significant trend changes (coefficient: 0.02; 95% CI: −0.01; 0.05) in abortion admission rates in the white girl population group. <b><i>Conclusion:</i></b> The hospitalizations in Brazil due to abortions in 10- to 14-year-old girls increased during the COVID-19 pandemic in 2020 compared to 2019, and the number of abortions was higher in the non-white population than the white population. Furthermore, recognizing that the implementation of school closure has affected the minority population differentially can help develop more effective actions to face other future similar situations.
DOI: 10.48597/vmdk-eujx
title: Measurement of Inden_123cd_pyrene at High Muffles

description: Measurement of Inden_123cd_pyrene at High Muffles
DOI: 10.48597/w6x9-4w7q
title: Measurement of Anthanthrene at High Muffles

description: Measurement of Anthanthrene at High Muffles
DOI: 10.48597/xdxz-phmg
title: Measurement of Nitric_acid at Glen Saugh

description: Measurement of Nitric_acid at Glen Saugh
DOI: 10.6084/m9.figshare.6813755
title: Additional file 1: of trumpet: transcriptome-guided quality assessment of m6A-seq data

description: Source code of theÂ trumpet R package. (ZIP 2229Â kb)
DOI: 10.6084/m9.figshare.6813755.v1
title: Additional file 1: of trumpet: transcriptome-guided quality assessment of m6A-seq data

description: Source code of theÂ trumpet R package. (ZIP 2229Â kb)
DOI: 10.3886/e195005
title: Data and Code for: Local Productivity Spillovers

description: Using Canadian administrative data, this paper presents evidence of revenue and productivity spillovers across firms at fine spatial scales. Accounting for the endogenous sorting of firms across space, we estimate an average elasticity of firm revenue and productivity with respect to the average quality of other firms within 75 meters of 0.024. We find scant evidence that the average firm benefits from being surrounded by a greater amount of economic activity at this spatial scale. Sorting of higher quality firms into more productive locations and higher average and aggregate quality peer groups is salient in the data.
DOI: 10.3886/e195005v1
title: Data and Code for: Local Productivity Spillovers

description: Using Canadian administrative data, this paper presents evidence of revenue and productivity spillovers across firms at fine spatial scales. Accounting for the endogenous sorting of firms across space, we estimate an average elasticity of firm revenue and productivity with respect to the average quality of other firms within 75 meters of 0.024. We find scant evidence that the average firm benefits from being surrounded by a greater amount of economic activity at this spatial scale. Sorting of higher quality firms into more productive locations and higher average and aggregate quality peer groups is salient in the data.