cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14328413.v1
title: The foraging behavior of the Large-headed Flatbill, Ramphotrigon megacephalum and the Dusky-tailed Flatbill, Ramphotrigon fuscicauda (Aves: Tyrannidae)

description: ABSTRACT Southwestern Amazonia has great bird diversity which includes birds specialized in bamboo forests. In this region, bamboo is considered a key element of the landscape. The objective of this study was to investigate and describe the foraging behavior of the Large-headed Flatbill, Ramphotrigon megacephalum (Swainson, 1835) and the Dusky-tailed Flatbill, Ramphotrigon fuscicauda Chapman, 1925, which occur sympatrically in the region and are considered bamboo specialists. This study was conducted between November 2013 and September 2014, within two fragments in the eastern portion of the state of Acre: Fazenda Experimental Catuaba, in the municipality of Senador Guiomard; and Reserva Florestal Humaitá, in Porto Acre. A total of 109 and 97 foraging events were registered, for the Large-headed Flatbill and the Dusky-tailed Flatbill, respectively. The two species frequently used bamboos for searching and capturing their prey. However, the large-headed Flatbill was more specialized in bamboo substrates. Both species use similar foraging techniques and the differences found between the two are minor, but when taken together, these differences may explain their ability to co-exist.
DOI: 10.6084/m9.figshare.14328414
title: Gonadal development and fecundity of the smooth weakfish Cynoscion leiarchus (Teleostei: Perciformes: Sciaenidae) in a tropical Brazilian bay

description: ABSTRACT Cynoscion leiarchus (Cuvier, 1830) is a coastal fish species that is widely distributed along the Western Atlantic coast, from Belize to Southern Brazil. In Brazil, C. leiarchus It is an important resource for commercial and artisanal fisheries. Our objective was to describe the oogenesis and spermatogenesis stages of the species and to estimate batch size and relative fecundity of a population at a tropical bay in southeastern Brazil. The examined specimens were obtained from artisanal catches that took place from July 2013 to June 2014. A total of 18 individuals (11 females and 7 males) were examined for histological analysis and 20 spawning-capable females were used to estimate fecundity. Five stages of oocyte development (primary growth, pre-vitellogenic, vitellogenic, oocyte maturation and atresia) and four stages of spermatocytes (spermatogonia, spermatocytes, spermatids, spermatozoa) were described in different phases of gonad development (immature, developing, spawning capable and regenerating), suggesting that spawning happens in batches, oocyte development is asynchronic and fecundity is indeterminate. Batch fecundity ranged from 100 × 103 to 866 × 103 oocytes undergoing final oocyte maturation, and relative fecundity ranged from 232 to 1,225 oocytes, averaging 467 oocytes per gram of ovary-free body weight. Fecundity tended to increase linearly with gonadal weight, total weight, total length, and age, but the highest linear correlation obtained was between fecundity and gonadal weight. This study provides the first information on the gonadal development of C. leiarchus from the Brazilian coast and is a baseline to compare with other populations and/or congeneric species.
DOI: 10.6084/m9.figshare.14328414.v1
title: Gonadal development and fecundity of the smooth weakfish Cynoscion leiarchus (Teleostei: Perciformes: Sciaenidae) in a tropical Brazilian bay

description: ABSTRACT Cynoscion leiarchus (Cuvier, 1830) is a coastal fish species that is widely distributed along the Western Atlantic coast, from Belize to Southern Brazil. In Brazil, C. leiarchus It is an important resource for commercial and artisanal fisheries. Our objective was to describe the oogenesis and spermatogenesis stages of the species and to estimate batch size and relative fecundity of a population at a tropical bay in southeastern Brazil. The examined specimens were obtained from artisanal catches that took place from July 2013 to June 2014. A total of 18 individuals (11 females and 7 males) were examined for histological analysis and 20 spawning-capable females were used to estimate fecundity. Five stages of oocyte development (primary growth, pre-vitellogenic, vitellogenic, oocyte maturation and atresia) and four stages of spermatocytes (spermatogonia, spermatocytes, spermatids, spermatozoa) were described in different phases of gonad development (immature, developing, spawning capable and regenerating), suggesting that spawning happens in batches, oocyte development is asynchronic and fecundity is indeterminate. Batch fecundity ranged from 100 × 103 to 866 × 103 oocytes undergoing final oocyte maturation, and relative fecundity ranged from 232 to 1,225 oocytes, averaging 467 oocytes per gram of ovary-free body weight. Fecundity tended to increase linearly with gonadal weight, total weight, total length, and age, but the highest linear correlation obtained was between fecundity and gonadal weight. This study provides the first information on the gonadal development of C. leiarchus from the Brazilian coast and is a baseline to compare with other populations and/or congeneric species.
DOI: 10.6084/m9.figshare.14328416
title: Blood metabolites as predictors to evaluate the body condition of Neopelma pallescens (Passeriformes: Pipridae) in northeastern Brazil

description: ABSTRACT Body condition is an important ecological attribute that can provide a measure of the energy stored by an animal or population. Body condition is traditionally ascertained with morphometric body condition indices (BCIs), but some researchers have used various physiological and biochemical parameters as predictors of body condition. This study aimed to test reliable biochemical predictors of body condition in individuals of Neopelma pallescens (Lafresnaye, 1853), found in an Atlantic forest patch. For this purpose we examined the relationship between body condition and the concentrations of blood glucose and ketones. We also verified correlations between blood metabolite concentrations and ecological variables, including time of day, seasons, breeding periods, and ectoparasite infestation. Birds were captured with mist nets at Reserva Biológica de Guaribas, state of Paraíba, Brazil. Blood samples were analyzed with a portable glucometer. The correlation between glucose and ketones was negative. Both metabolites showed significant variations according to time of day. Glucose levels were higher in the afternoon and ketones levels were higher in the morning, suggesting a correlation with daily food intake. The BCI of non-breeding birds was negatively correlated with glucose concentrations. However, the correlation between glucose and the BCI of incubating birds was a positive. Ketone bodies did not correlate with body condition. In relation to ectoparasite infestation, only ketones showed significant results, presenting a higher concentration in infested individuals. Glucose is a good predictor of the BCI of incubating birds since it correlates positively with it. However, the lack of seasonal variations in metabolites indicates that the nutritional status of tropical birds does not change when food is abundant. Thus, we conclude that glucose and ketone bodies can predict the nutritional status of birds but in a context-dependent fashion.
DOI: 10.6084/m9.figshare.14328416.v1
title: Blood metabolites as predictors to evaluate the body condition of Neopelma pallescens (Passeriformes: Pipridae) in northeastern Brazil

description: ABSTRACT Body condition is an important ecological attribute that can provide a measure of the energy stored by an animal or population. Body condition is traditionally ascertained with morphometric body condition indices (BCIs), but some researchers have used various physiological and biochemical parameters as predictors of body condition. This study aimed to test reliable biochemical predictors of body condition in individuals of Neopelma pallescens (Lafresnaye, 1853), found in an Atlantic forest patch. For this purpose we examined the relationship between body condition and the concentrations of blood glucose and ketones. We also verified correlations between blood metabolite concentrations and ecological variables, including time of day, seasons, breeding periods, and ectoparasite infestation. Birds were captured with mist nets at Reserva Biológica de Guaribas, state of Paraíba, Brazil. Blood samples were analyzed with a portable glucometer. The correlation between glucose and ketones was negative. Both metabolites showed significant variations according to time of day. Glucose levels were higher in the afternoon and ketones levels were higher in the morning, suggesting a correlation with daily food intake. The BCI of non-breeding birds was negatively correlated with glucose concentrations. However, the correlation between glucose and the BCI of incubating birds was a positive. Ketone bodies did not correlate with body condition. In relation to ectoparasite infestation, only ketones showed significant results, presenting a higher concentration in infested individuals. Glucose is a good predictor of the BCI of incubating birds since it correlates positively with it. However, the lack of seasonal variations in metabolites indicates that the nutritional status of tropical birds does not change when food is abundant. Thus, we conclude that glucose and ketone bodies can predict the nutritional status of birds but in a context-dependent fashion.
DOI: 10.6084/m9.figshare.14328417.v1
title: The adductor pectoral fin muscle of Micropogonias furnieri (Perciformes: Sciaenidae): a morphological and histochemical study

description: ABSTRACT The adductor pectoral fin muscle in post-spawning females of the white croaker Micropogonias furnieri (Desmarest, 1823) is described from a morphological, histochemical and morphometric perspectives. A description of the morphological characteristics was conducted after dissections in different layers, down to the deep layer. Five muscles were found: superficial, medial, radial and deep adductors, and dorsal arrector. Their fibers were studied after applying histochemical techniques: succinic dehydrogenase (SDH) to reveal mitochondria, periodic acid-Schiff (PAS) for glycogen, Sudan black for lipids, myosin adenosinetriphosphatase (mATPase) to reveal the types of fibers, and modified mATPase to evidence the capillaries. Fiber diameters were measured and the number of capillaries was counted. Fiber subtypes named small, medium and large were found within red, pink and white fibers, the latter prevailing. Staining homogeneity was observed in white fibers after alkaline pre-incubations. The number of capillaries decreased from red to white fibers. Due to the prevalence of white fibers, the adductor muscle of the pectoral fins appears to be capable of rapid and discontinuous movements, which are important to body stabilization during subcarangiform swimming. The homogenous staining of white fibers observed in this research corresponds to the post-spawning gonad stage studied.
DOI: 10.6084/m9.figshare.14328417
title: The adductor pectoral fin muscle of Micropogonias furnieri (Perciformes: Sciaenidae): a morphological and histochemical study

description: ABSTRACT The adductor pectoral fin muscle in post-spawning females of the white croaker Micropogonias furnieri (Desmarest, 1823) is described from a morphological, histochemical and morphometric perspectives. A description of the morphological characteristics was conducted after dissections in different layers, down to the deep layer. Five muscles were found: superficial, medial, radial and deep adductors, and dorsal arrector. Their fibers were studied after applying histochemical techniques: succinic dehydrogenase (SDH) to reveal mitochondria, periodic acid-Schiff (PAS) for glycogen, Sudan black for lipids, myosin adenosinetriphosphatase (mATPase) to reveal the types of fibers, and modified mATPase to evidence the capillaries. Fiber diameters were measured and the number of capillaries was counted. Fiber subtypes named small, medium and large were found within red, pink and white fibers, the latter prevailing. Staining homogeneity was observed in white fibers after alkaline pre-incubations. The number of capillaries decreased from red to white fibers. Due to the prevalence of white fibers, the adductor muscle of the pectoral fins appears to be capable of rapid and discontinuous movements, which are important to body stabilization during subcarangiform swimming. The homogenous staining of white fibers observed in this research corresponds to the post-spawning gonad stage studied.
DOI: 10.6084/m9.figshare.14328420
title: Species of Lensia (Cnidaria: Hydrozoa: Siphonophorae) from southeastern Brazilian waters

description: ABSTRACT The siphonophores of the Brazilian coast are poorly studied, despite their abundance and ecological importance. Lensia is the most diverse genus within Siphonophora, with twenty-six valid species. A total of twenty species of Lensia are recorded for South American marine waters. This study presents morphological descriptions and an identification key to the species of Lensia that were collected in two oceanographic campaigns throughout the southeastern Brazilian coast. A total of sixty-one specimens were photographed, described, schematized and measured, and fifteen species of Lensia were identified.
DOI: 10.6084/m9.figshare.14328420.v1
title: Species of Lensia (Cnidaria: Hydrozoa: Siphonophorae) from southeastern Brazilian waters

description: ABSTRACT The siphonophores of the Brazilian coast are poorly studied, despite their abundance and ecological importance. Lensia is the most diverse genus within Siphonophora, with twenty-six valid species. A total of twenty species of Lensia are recorded for South American marine waters. This study presents morphological descriptions and an identification key to the species of Lensia that were collected in two oceanographic campaigns throughout the southeastern Brazilian coast. A total of sixty-one specimens were photographed, described, schematized and measured, and fifteen species of Lensia were identified.
DOI: 10.6084/m9.figshare.14328423
title: Taxonomic identification using geometric morphometric approach and limited data: an example using the upper molars of two sympatric species of Calomys (Cricetidae: Rodentia)

description: ABSTRACT The taxonomic identification of micromammals might be complicated when the study material is fragmented, as it is the case with pellets and fossil material. On the other hand, tooth morphology generally provides accurate information for species identification. Teeth preserve notably well, retaining their original morphology, unlike skulls and mandibles, which can get crushed or have missing parts. Here, we explored a geometric morphometrics approach (GM) to identify fragmented specimens of two sympatric Calomys Waterhouse, 1837 species - Calomys tener (Winge, 1888) and Calomys expulsus (Lund, 1841) - using the morphology of intact molars as the basis for identification. Furthermore, we included some specimens of uncertain taxonomic identification to test their affinities and the utility of the shape of the molar to identify incomplete specimens. We evaluated the variations in the shape of the first upper molar (M1) among 46 owl pellets specimens of Calomys, including C. expulsus (n = 15), C. tener (n = 15), and unidentified specimens treated as Calomys sp. (n = 16) through GM analysis using 17 landmarks. The data was explored using PCA, PERMANOVA, and Discriminant analyses over the Procrustes residuals matrix were applied to evaluate inter- and intraspecific shape differences. Also, we evaluated whether allometric shape differences could impact the data, but found no evidence of a correlation between size and shape. Our results support that shape differences in the M1 are effective for discriminating between C. tener and C. expulsus. Moreover, the unidentified specimens do not represent a third shape but could be identified with confidence either as C. tener or C. expulsus. Our results show that even with fragmentary materials, GM is a feasible and useful tool for exploring inter-specific shape differences and assisting in taxonomic identification as a complement to traditional qualitative description of diagnostic features in poorly preserved specimens.
DOI: 10.6084/m9.figshare.14328423.v1
title: Taxonomic identification using geometric morphometric approach and limited data: an example using the upper molars of two sympatric species of Calomys (Cricetidae: Rodentia)

description: ABSTRACT The taxonomic identification of micromammals might be complicated when the study material is fragmented, as it is the case with pellets and fossil material. On the other hand, tooth morphology generally provides accurate information for species identification. Teeth preserve notably well, retaining their original morphology, unlike skulls and mandibles, which can get crushed or have missing parts. Here, we explored a geometric morphometrics approach (GM) to identify fragmented specimens of two sympatric Calomys Waterhouse, 1837 species - Calomys tener (Winge, 1888) and Calomys expulsus (Lund, 1841) - using the morphology of intact molars as the basis for identification. Furthermore, we included some specimens of uncertain taxonomic identification to test their affinities and the utility of the shape of the molar to identify incomplete specimens. We evaluated the variations in the shape of the first upper molar (M1) among 46 owl pellets specimens of Calomys, including C. expulsus (n = 15), C. tener (n = 15), and unidentified specimens treated as Calomys sp. (n = 16) through GM analysis using 17 landmarks. The data was explored using PCA, PERMANOVA, and Discriminant analyses over the Procrustes residuals matrix were applied to evaluate inter- and intraspecific shape differences. Also, we evaluated whether allometric shape differences could impact the data, but found no evidence of a correlation between size and shape. Our results support that shape differences in the M1 are effective for discriminating between C. tener and C. expulsus. Moreover, the unidentified specimens do not represent a third shape but could be identified with confidence either as C. tener or C. expulsus. Our results show that even with fragmentary materials, GM is a feasible and useful tool for exploring inter-specific shape differences and assisting in taxonomic identification as a complement to traditional qualitative description of diagnostic features in poorly preserved specimens.
DOI: 10.6084/m9.figshare.6207983
title: Temperature and circadian effects on metabolic rate of South American echimyid rodents, Trinomys setosus and Clyomys bishopi (Rodentia: Echimyidae)

description: ABSTRACT Basal metabolic rate (BMR) represents the lowest level of metabolic activity capable to sustain homeostasis in an endotherm and is an important tool to compare metabolic rates of different species. Echimyidae is the most specious family within caviomorph rodents, however, little is known about the biology of its species, such as Trinomys setosus (Desmarest, 1817) and Clyomys bishopi (Ávila-Pires & Wutke, 1981), a ground and an underground dwelling echimyid, respectively. The ambient temperature and circadian effects on metabolic rate were evaluated through closed-system respirometry for these two species, as well as the circadian effects on CO2 production and respiratory exchange ratio (RER). Trinomys setosus and C. bishopi showed the lowest metabolic rates (0.56 ± 0.02 mLO2.h-1.g-1 and 0.53 ± 0.03 mLO2.h-1.g-1, respectively) at 32 °C and during the light phase. Under laboratory conditions, T. setosus showed metabolic rate variation compatible with nocturnal activity, whereas C. bishopi activity cycle remains unclear. Both species showed BMR lower than expected by allometric regressions for rodents.
DOI: 10.6084/m9.figshare.6207983.v1
title: Temperature and circadian effects on metabolic rate of South American echimyid rodents, Trinomys setosus and Clyomys bishopi (Rodentia: Echimyidae)

description: ABSTRACT Basal metabolic rate (BMR) represents the lowest level of metabolic activity capable to sustain homeostasis in an endotherm and is an important tool to compare metabolic rates of different species. Echimyidae is the most specious family within caviomorph rodents, however, little is known about the biology of its species, such as Trinomys setosus (Desmarest, 1817) and Clyomys bishopi (Ávila-Pires & Wutke, 1981), a ground and an underground dwelling echimyid, respectively. The ambient temperature and circadian effects on metabolic rate were evaluated through closed-system respirometry for these two species, as well as the circadian effects on CO2 production and respiratory exchange ratio (RER). Trinomys setosus and C. bishopi showed the lowest metabolic rates (0.56 ± 0.02 mLO2.h-1.g-1 and 0.53 ± 0.03 mLO2.h-1.g-1, respectively) at 32 °C and during the light phase. Under laboratory conditions, T. setosus showed metabolic rate variation compatible with nocturnal activity, whereas C. bishopi activity cycle remains unclear. Both species showed BMR lower than expected by allometric regressions for rodents.
DOI: 10.6084/m9.figshare.14328426
title: Temporal differences in breeding site use between tits and mice

description: ABSTRACT Describing the interactions among cavity breeders is key to understanding their breeding ecology. In this study the temporal difference in cavity use between the great tit, Parus major (Linnaeus, 1758) and the small Japanese field mice, Apodemus argenteus (Temminck, 1845) is investigated, as a first step for clarifying the interaction between bird and mammal cavity breeders. Forty-seven nest boxes were installed on tree trunks in two urban forests of Hokkaido Island, Japan, and the breeding nests of tits and mice were found in 34 and 11 boxes, respectively. The tits used the nest boxes throughout the breeding season, from May to July. In contrast, mice breeding nests were found in the last half of the breeding season, from July to October. Our results showed that field mice rarely used boxes during the tits’ breeding season. This study provides important information, such as temporal differences in breeding site use between tits and mice.
DOI: 10.6084/m9.figshare.14328426.v1
title: Temporal differences in breeding site use between tits and mice

description: ABSTRACT Describing the interactions among cavity breeders is key to understanding their breeding ecology. In this study the temporal difference in cavity use between the great tit, Parus major (Linnaeus, 1758) and the small Japanese field mice, Apodemus argenteus (Temminck, 1845) is investigated, as a first step for clarifying the interaction between bird and mammal cavity breeders. Forty-seven nest boxes were installed on tree trunks in two urban forests of Hokkaido Island, Japan, and the breeding nests of tits and mice were found in 34 and 11 boxes, respectively. The tits used the nest boxes throughout the breeding season, from May to July. In contrast, mice breeding nests were found in the last half of the breeding season, from July to October. Our results showed that field mice rarely used boxes during the tits’ breeding season. This study provides important information, such as temporal differences in breeding site use between tits and mice.