cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0184461.10fu
title: SH0184461.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0184462.10fu
title: SH0184462.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0184463.10fu
title: SH0184463.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0184464.10fu
title: SH0184464.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0184465.10fu
title: SH0184465.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0184466.10fu
title: SH0184466.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0184467.10fu
title: SH0184467.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.15624347
title: Research data supporting: "Data-driven assessment of optimal spatiotemporal resolutions for information extraction in noisy timeseries data"

description: The folder contains the dataset and the codes necessary to perform Optimal resolution analyses.

Each system dataset (gro/xtc/xyz) is intended to be analyzed by 'compute RDF' function which provide the list of cut offs to be use.

Those distances need to be used to compute the different descriptors (LENS/SOAP/PHI).

Onion clusterting can be then be performed on descriptor's timeseries and the different distances ranked with the comparison function.
DOI: 10.5281/zenodo.15624348
title: Research data supporting: "Data-driven assessment of optimal spatiotemporal resolutions for information extraction in noisy timeseries data"

description: The folder contains the dataset and the codes necessary to perform Optimal resolution analyses.

Each system dataset (gro/xtc/xyz) is intended to be analyzed by 'compute RDF' function which provide the list of cut offs to be use.

Those distances need to be used to compute the different descriptors (LENS/SOAP/PHI).

Onion clusterting can be then be performed on descriptor's timeseries and the different distances ranked with the comparison function.
DOI: 10.15468/dl.6sv5fq
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "OccurrenceStatus is Present",
 "TaxonKey is Neotomys ebriosus Thomas, 1894"
 ]
}

 The dataset includes 124 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068464-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/uj2dta
title: Observations on the Biology and Sclerochronology of “ Turritella ” Duplicata (Linnaeus, 1758) (Cerithioidea, Turritellidae) from Southern Thailand

description: This dataset contains the digitized treatments in Plazi based on the original journal article Waite, Richard, Allmon, Warren D. (2016): Observations on the Biology and Sclerochronology of “ Turritella ” Duplicata (Linnaeus, 1758) (Cerithioidea, Turritellidae) from Southern Thailand. Malacologia 59 (2): 247-269, DOI: 10.4002/040.059.0206, URL: http://dx.doi.org/10.4002/040.059.0206ABSTRACTTurritella duplicata (Linnaeus, 1758) is a marine suspension-feeding gastropod found in shallow-marine and tidal flat environments throughout Southeast Asia and the Indo-West Pacific. It was studied on a tidal flat in the national park of Nopparat Thara in the district of Krabi, southern Thailand. Turritella duplicata was found primarily in the lower intertidal zone, and 90 specimens were gathered and measured. Their geographical positions on the flat were mapped, revealing zonations in population distribution, both parallel and perpendicular to the shore-line. The size distribution of the shells indicates that the population consists exclusivelyof adults. δ18O sclerochronologyperformed on three shells showsvariations of upto 1.5‰ associated with seasonal changes in water parameters, suggesting longevity of about three years and seasonally controlled growth rates. The absence of juveniles and observed population distribution coupled with the sclerochronological data suggest that reproduction occurs in early spring, and that the population represents three cohorts approximately one year in age and older. Migration to deeper water during other seasons cannot be ruled out. Smaller individuals were preferentially found on the inner tidal flat, and individuals older than two years preferentially colonised the outer tidal flat. The carbon isotopic composition of the analysed shells partially tracks these life stages, suggesting that metabolic “vital effects” are influencing the δ13C of the shells.Keywords: stable isotopes, sclerochronology, vital effects, tidal flat, scarring, breakage.
DOI: 10.15468/s8gt95
title: Heckelodes and Coquandon nom. nov., replacement names for Galeodes Heckel, 1854 and Orthodon Coquand, 1859 (Chondrichthyes,? Galeomorphii)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Greenfield, Tyler (2025): Heckelodes and Coquandon nom. nov., replacement names for Galeodes Heckel, 1854 and Orthodon Coquand, 1859 (Chondrichthyes,? Galeomorphii). Zootaxa 5696 (2): 298-300, DOI: 10.11646/zootaxa.5696.2.10, URL: https://doi.org/10.11646/zootaxa.5696.2.10
DOI: 10.15468/y2qg9q
title: Unveiling two new species of Trichoderma (Hypocreales, Hypocreaceae) that cause green mold disease on Stropharia rugosoannulata from Guizhou Province, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tarafder, Entaj, Wenjun, Zhang, Karunarathna, Samantha C., Elgorban, Abdallah M., Huilian, Man, Nan, Wu, Zeng, Xiangyu, Yong, Wang, Tian, Feng-Hua (2024): Unveiling two new species of Trichoderma (Hypocreales, Hypocreaceae) that cause green mold disease on Stropharia rugosoannulata from Guizhou Province, China. MycoKeys 110: 361-383, DOI: 10.3897/mycokeys.110.134154AbstractStropharia rugosoannulata is an important edible mushroom in China, but green mold disease has caused significant production and economic losses. In this study, two new pathogens Trichoderma strophariensis and T. viridistromatis were identified as the causal agents of this disease. During October-November 2023, six strains of the fungal pathogen were isolated from infected fruiting bodies of S. rugosoannulata and identified based on morphological characteristics and molecular phylogenetic analyses of internal transcribed spacer (nrITS), the second largest RNA polymerase II subunit (rpb 2) and the partial translation elongation factor 1 - alpha (tef 1 - α) region. The representative isolates of the pathogenic green mold Trichoderma species were used to perform a pathogenicity test with spore suspensions, resulting in symptoms similar to those observed in the cultivated field. The same pathogens were successfully re-isolated, thereby fulfilling Koch’s postulates. Detailed morphological descriptions, illustrations, culture characteristics, and comparisons with morphologically similar and closely related species are provided.
DOI: 10.5281/zenodo.18047416
title: Table 2 in Two new lecanoroid lichen species from the forested wetlands of South Korea, with a key for Korean Protoparmeliopsis species

description: Table 2. Comparison of the new species with close species in the Lecanora symmicta group.
SpeciesL. parasymmictaL. aitemaL. confusaL. strobilinaL. symmictaThallus growth formareolate-rimosegranular-areolategranular-areolategranular-subareolateareolate-reproseThallus colorolive-gray to graycream-whitegreen gray to yellow graywhite to pale yellow-greenvariable (pale yellow-green, white or green-gray)Pruniaabsent or slightly pruinose on discabsentabsentpresentabsentHypothallusblackishindistinct or pale brownabsent or indistinctindistinctindistinctApothecia (mm diam.)0.3-1.70.2-0.50.4-0.70.4-1.00.3-1.0Thalline excipulumabsent from beginningpresent when youngpresent when youngpresent when youngpresent when youngEpihymeniumyellow-brownyellow-brownbrowncolorlesscolorless, yellow-brown to oliveParaphyses (μm)1-1.52-2.51-21-1.52-2.5Asci (μm)50-60 × 13-2135-45 × 10-1532-45 × 11-1535-45 × 10-1730-47 × 8-12*Ascospores (μm)11-18 × 4-712-17 × 4.5-5.510-14 × 4-510-15 × 4-69-15.5 × 4-5 8-12 × 4-6*Pycnoconidia (μm)12-21 × 0.5-0.8not observednot observed25 × 1.018-25 × 0.5-1.0Spot testthallus K ± slightly yellow, C-, KC-thallus K-, KC ± slightly yellowthallus K-, C+ orange, KC+ orangethallus K+ yellow to brown, KC ± yellowthallus K-, C ± orange, KC ± slightly yellowUVnegativepale orangebright orangepale orangedull orangeSubstanceusnic acid, zeorin, placodiolic acid± usnic acid, ± zeorinusnic acid, ± zeorin, thiophanic acid, ± arthothelinusnic acid, zeorinusnic acid, zeorin, arthothelin, ± thiophanic acidReferenceBDNA-L-0001218 (paratype), BDNA-L-0001220 (holotype), and BDNA-L-0001235 (paratype)Smith et al. 2009Nash III et al. 2004; Smith et al. 2009Brodo et al. 2001; Smith et al. 2009Brodo et al. 2001; Nash III et al. 2004; Smith et al. 2009; BDNA-L-0000547, BDNA-L-0000548, and BDNA-L-0000551
The morphological and chemical characteristics for several species close to the new species are referenced mainly from the previous literature. All information on the new species is measured from type specimens (BDNA-L-0001218, BDNA-L-0001220, and BDNA-L-0001235) in this study. Particularly the asci of the closest species, Lecanora symmicta, was not described from the previous literature and the asci and the ascospores for the species are measured from selected specimens (BDNA-L-0000547, BDNA-L-0000548, and BDNA-L-0000551) in this study, represented with asterisk marks(*).
description: Published as part of Lee, Beeyoung Gun & Hur, Jae-Seoun, 2021, Two new lecanoroid lichen species from the forested wetlands of South Korea, with a key for Korean Protoparmeliopsis species, pp. 163 in MycoKeys 84 on page 163, DOI: 10.3897/mycokeys.84.70798
DOI: 10.5281/zenodo.18047417
title: Table 2 in Two new lecanoroid lichen species from the forested wetlands of South Korea, with a key for Korean Protoparmeliopsis species

description: Table 2. Comparison of the new species with close species in the Lecanora symmicta group.
SpeciesL. parasymmictaL. aitemaL. confusaL. strobilinaL. symmictaThallus growth formareolate-rimosegranular-areolategranular-areolategranular-subareolateareolate-reproseThallus colorolive-gray to graycream-whitegreen gray to yellow graywhite to pale yellow-greenvariable (pale yellow-green, white or green-gray)Pruniaabsent or slightly pruinose on discabsentabsentpresentabsentHypothallusblackishindistinct or pale brownabsent or indistinctindistinctindistinctApothecia (mm diam.)0.3-1.70.2-0.50.4-0.70.4-1.00.3-1.0Thalline excipulumabsent from beginningpresent when youngpresent when youngpresent when youngpresent when youngEpihymeniumyellow-brownyellow-brownbrowncolorlesscolorless, yellow-brown to oliveParaphyses (μm)1-1.52-2.51-21-1.52-2.5Asci (μm)50-60 × 13-2135-45 × 10-1532-45 × 11-1535-45 × 10-1730-47 × 8-12*Ascospores (μm)11-18 × 4-712-17 × 4.5-5.510-14 × 4-510-15 × 4-69-15.5 × 4-5 8-12 × 4-6*Pycnoconidia (μm)12-21 × 0.5-0.8not observednot observed25 × 1.018-25 × 0.5-1.0Spot testthallus K ± slightly yellow, C-, KC-thallus K-, KC ± slightly yellowthallus K-, C+ orange, KC+ orangethallus K+ yellow to brown, KC ± yellowthallus K-, C ± orange, KC ± slightly yellowUVnegativepale orangebright orangepale orangedull orangeSubstanceusnic acid, zeorin, placodiolic acid± usnic acid, ± zeorinusnic acid, ± zeorin, thiophanic acid, ± arthothelinusnic acid, zeorinusnic acid, zeorin, arthothelin, ± thiophanic acidReferenceBDNA-L-0001218 (paratype), BDNA-L-0001220 (holotype), and BDNA-L-0001235 (paratype)Smith et al. 2009Nash III et al. 2004; Smith et al. 2009Brodo et al. 2001; Smith et al. 2009Brodo et al. 2001; Nash III et al. 2004; Smith et al. 2009; BDNA-L-0000547, BDNA-L-0000548, and BDNA-L-0000551
The morphological and chemical characteristics for several species close to the new species are referenced mainly from the previous literature. All information on the new species is measured from type specimens (BDNA-L-0001218, BDNA-L-0001220, and BDNA-L-0001235) in this study. Particularly the asci of the closest species, Lecanora symmicta, was not described from the previous literature and the asci and the ascospores for the species are measured from selected specimens (BDNA-L-0000547, BDNA-L-0000548, and BDNA-L-0000551) in this study, represented with asterisk marks(*).
description: Published as part of Lee, Beeyoung Gun & Hur, Jae-Seoun, 2021, Two new lecanoroid lichen species from the forested wetlands of South Korea, with a key for Korean Protoparmeliopsis species, pp. 163 in MycoKeys 84 on page 163, DOI: 10.3897/mycokeys.84.70798
DOI: 10.15468/dl.cx2s2j
title: Occurrence Download

description: A dataset containing 470566 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Specimen"
 ]
 },
 "CoordinateUncertaintyInMeters 0.0-9959.0",
 "TaxonKey is Staphylinidae",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 470566 records from 432 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069415-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dnf49q
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 {
 "or" : [
 "DatasetKey is NMNH Extant Specimen Records (USNM, US)",
 "DatasetKey is Museum of Comparative Zoology, Harvard University",
 "DatasetKey is Malacology Collection at the Academy of Natural Sciences of Philadelphia",
 "DatasetKey is NCSM Mollusk Collection",
 "DatasetKey is Canadian Museum of Nature Mollusc Collection",
 "DatasetKey is University of Michigan Museum of Zoology, Division of Mollusks",
 "DatasetKey is LACM Malacology"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lampsilis dolabraeformis (I.Lea, 1838)"
 ]
}

 The dataset includes 119 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021919-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnhjpv
title: Occurrence Download

description: A dataset containing 4015 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Norwegian Species Observation Service",
 "TaxonKey is Erica L."
 ]
}

 The dataset includes 4015 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051358-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hot8sh
title: Occurrence Download

description: A dataset containing 156 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diabrotica balteata J.L.LeConte, 1865"
 ]
}

 The dataset includes 156 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003233-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gcvlx7
title: Occurrence Download

description: A dataset containing 19431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Rhodeus amarus (Bloch, 1782)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 19431 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031430-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqo4ea
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-67.08801 18.90421,-67.50989 17.86166,-64.25793 17.577,-64.03821 18.07902,-64.77649 18.17926,-64.67981 18.8044,-67.08801 18.90421))",
 "HasCoordinate is true",
 "TaxonKey is Xylosma buxifolium A.Gray",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007525-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.