cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4qpmfn
title: Occurrence Download

description: A dataset containing 31034 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arundo donax L."
 ]
}

 The dataset includes 31034 records from 340 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005986-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oh5akv
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-5.62419 41.01587,-4.82219 41.01587,-4.82219 41.33653,-5.62419 41.33653,-5.62419 41.01587))",
 "HasCoordinate is true",
 "TaxonKey is Linum suffruticosum L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000902-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pu2ztc
title: Occurrence Download

description: A dataset containing 431226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-104.85352 11.92755,-90.79102 13.68442,-85.29785 20.55874,-96.1084 30.43731,-119.88281 33.43144,-104.85352 11.92755))",
 "HasGeospatialIssue is false",
 "TaxonKey is Trochilidae"
 ]
}

 The dataset includes 431226 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041671-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddm7t5
title: Occurrence Download

description: A dataset containing 630112 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fagus sylvatica L."
 ]
}

 The dataset includes 630112 records from 896 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023349-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.chfsfv
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-82.01294 33.50476,-84.95728 32.24997,-84.91333 30.37288,-81.35376 30.35392,-80.98022 31.95216,-82.01294 33.50476))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sarracenia minor Walter"
 ]
}

 The dataset includes 154 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078661-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azfgux
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amynthas agrestis (Goto & Hatai, 1899)"
 ]
}

 The dataset includes 21 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000902-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4fszq
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Thyroptera discifera (Lichtenstein & Peters, 1855)"
 ]
}

 The dataset includes 52 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053967-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7ngac
title: Occurrence Download

description: A dataset containing 1368 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-102.48047 10.72266,-82.08984 10.72266,-82.08984 24.08203,-102.48047 24.08203,-102.48047 10.72266))",
 "HasCoordinate is true",
 "TaxonKey is Cuniculus paca (Linnaeus, 1766)"
 ]
}

 The dataset includes 1368 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0284776-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jfqvde
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bathylagichthys australis Kobyliansky, 1990"
 ]
}

 The dataset includes 32 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029277-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qjjzw
title: Occurrence Download

description: A dataset containing 465905 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Brazil",
 "TaxonKey is Asteraceae"
 ]
}

 The dataset includes 465905 records from 236 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039013-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25318/3310107001-eng
title: Planned actions over the next 12 months by business or organization as a result of any tariffs applied by the United States on imports from Canada, fourth quarter of 2025

description: Planned actions over the next 12 months by business or organization as a result of any tariffs applied by the United States on imports from Canada, by North American Industry Classification System (NAICS), business employment size, type of business, business activity and majority ownership, fourth quarter of 2025.
DOI: 10.17026/ar/vqfaha
title: PAN-00173302 - round bullet (small fire arm)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00173302&lt;/p&gt;
description: Modified: 2025-04-25T10:39:56+02:00
DOI: 10.15468/dl.7hpwb9
title: Occurrence Download

description: A dataset containing 1134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Setophaeosphaeria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1134 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020594-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.58132/5uw0ok
title: Epigraphy & identity in the Early Byzantine Middle East

description: The ods file contains tables with data from the database available under the link https://epi-identity-database.uw.edu.pl/ This includes the descriptions of archaeological sites where inscriptions in languages other than Greek were found in the late-antique Levant (Syriac, Christian-Palestinian Aramaic, Jewish-Palestinian Aramaic, Hebrew), descriptions of buildings, in which the inscriptions were found, texts of insciptions, prospographical data on people attested in these inscriptions. The chronological range is the fourth - seventh century CE.
DOI: 10.15468/dl.cf9rq4
title: Occurrence Download

description: A dataset containing 445 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Falco peregrinus tundrius"
 ]
}

 The dataset includes 445 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020595-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13270451
title: Data for Coevolution and temporal dynamics of species interactions shape species coexistence

description: This folder contains all the data and R codes used to reproduce simulations and analyses.


# Project structure




.
└── data_zenodo
    ├── data
    ├── scripts
        ├── functions and secondary scripts
        | numbered scripts
    ├── README.md




The folder "functions and secondary scripts" contains some functions that are called in the main scripts or alternative scripts that have been used while building up the project, for exploration.


# Codes


### Initial conditions


Scripts 1.1 & 1.2 defined initial conditions for theoretical and empirical communities, respectively, to allows the reproducibility of the simulations.


### Simulations under Julia


Script 2 & 2bis are Julia scripts that were used to perform the coevolution simulations, using theoretical and empirical initial conditions, respectively. The ran on a HPC plateform.


### Extracts and plot the results of theoretical simulations


Script 3 extracts community measures from theoretical simulations. The middle part of script 3, was also ran on a HPC plateform to gain time.


Script 4 plots the results, from figure 2 to figure 4. Figure 1 was done in a sepate scripts labelled *Figure1.r*


### Analyse empirical data and simulations with empirical initial conditions (=with empirical network dimensions)


Scripts 5 extracts communitiy measures from empirical networks and from simulations performed with initial empirical network sizes.


Script 6 merges community measures from empirical networks and simulations to do figure 5.


# Empirical data


*flow_pheno_empirical.csv* and *poll_pheno_empirical.csv* contain the empirical phenological parameters for plant and pollinator species, respectively: the mean activity day (mu) and its standard deviation (sde) representing the duration of the activity period.


*matrices_empirical_networks.RData* contains an R object with the 17 networks used. Plants are in rows and pollinators in columns, with each cell representing the average interaction value across sampling rounds, corrected by abundances.


You can access it in R via:




#load data
load("matrices_empirical_networks.RData")

#see the structure (a list of 17 networks)
str(networks)

#access the first network
networks[[1]]
DOI: 10.5281/zenodo.17779432
title: Data for Coevolution and temporal dynamics of species interactions shape species coexistence

description: This folder contains all the data and R codes used to reproduce simulations and analyses.


# Project structure




.
└── data_zenodo
    ├── data
    ├── scripts
        ├── functions and secondary scripts
        | numbered scripts
    ├── README.md




The folder "functions and secondary scripts" contains some functions that are called in the main scripts or alternative scripts that have been used while building up the project, for exploration.


# Codes


### Initial conditions


Scripts 1.1 & 1.2 defined initial conditions for theoretical and empirical communities, respectively, to allows the reproducibility of the simulations.


### Simulations under Julia


Script 2 & 2bis are Julia scripts that were used to perform the coevolution simulations, using theoretical and empirical initial conditions, respectively. The ran on a HPC plateform.


### Extracts and plot the results of theoretical simulations


Script 3 extracts community measures from theoretical simulations. The middle part of script 3, was also ran on a HPC plateform to gain time.


Script 4 plots the results, from figure 2 to figure 4. Figure 1 was done in a sepate scripts labelled *Figure1.r*


### Analyse empirical data and simulations with empirical initial conditions (=with empirical network dimensions)


Scripts 5 extracts communitiy measures from empirical networks and from simulations performed with initial empirical network sizes.


Script 6 merges community measures from empirical networks and simulations to do figure 5.


# Empirical data


*flow_pheno_empirical.csv* and *poll_pheno_empirical.csv* contain the empirical phenological parameters for plant and pollinator species, respectively: the mean activity day (mu) and its standard deviation (sde) representing the duration of the activity period.


*matrices_empirical_networks.RData* contains an R object with the 17 networks used. Plants are in rows and pollinators in columns, with each cell representing the average interaction value across sampling rounds, corrected by abundances.


You can access it in R via:




#load data
load("matrices_empirical_networks.RData")

#see the structure (a list of 17 networks)
str(networks)

#access the first network
networks[[1]]
DOI: 10.15468/dl.xeqv8m
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mammalia",
 "HasCoordinate is true",
 "Geometry POLYGON ((-115.6786 34.69031, -115.6782 34.69049, -115.6778 34.69069, -115.6774 34.6909, -115.6771 34.69113, -115.6767 34.69138, -115.6764 34.69164, -115.676 34.69192, -115.6757 34.6922, -115.6755 34.6925, -115.6752 34.69282, -115.6749 34.69314, -115.6747 34.69347, -115.6745 34.69382, -115.6743 34.69417, -115.6742 34.69452, -115.674 34.69489, -115.6739 34.69526, -115.6738 34.69563, -115.6738 34.69601, -115.6737 34.69639, -115.6737 34.69677, -115.6737 34.69715, -115.6737 34.69754, -115.6738 34.69792, -115.6738 34.69829, -115.6739 34.69867, -115.6744 34.70033, -115.6746 34.7007, -115.6747 34.70106, -115.6749 34.70142, -115.6751 34.70177, -115.6753 34.70211, -115.6755 34.70244, -115.6758 34.70276, -115.676 34.70307, -115.6763 34.70336, -115.6766 34.70365, -115.677 34.70392, -115.6773 34.70417, -115.6777 34.70441, -115.6781 34.70464, -115.6784 34.70485, -115.6788 34.70504, -115.6793 34.70522, -115.6797 34.70537, -115.6801 34.70551, -115.6806 34.70563, -115.681 34.70574, -115.6815 34.70582, -115.6819 34.70588, -115.6824 34.70593, -115.6828 34.70595, -115.6833 34.70595, -115.6838 34.70594, -115.6842 34.7059, -115.6847 34.70585, -115.6851 34.70577, -115.6856 34.70568, -115.686 34.70557, -115.6865 34.70543, -115.6888 34.70467, -115.6892 34.70452, -115.6897 34.70435, -115.6901 34.70416, -115.6905 34.70396, -115.6909 34.70373, -115.6912 34.70349, -115.6916 34.70324, -115.6919 34.70297, -115.6922 34.70268, -115.6925 34.70239, -115.6928 34.70207, -115.6931 34.70175, -115.6933 34.70142, -115.6936 34.70108, -115.6937 34.70072, -115.6939 34.70036, -115.6941 34.7, -115.6942 34.69962, -115.6943 34.69925, -115.6944 34.69886, -115.6944 34.69848, -115.6945 34.69809, -115.6945 34.6977, -115.6945 34.69732, -115.6944 34.69693, -115.6943 34.69655, -115.6943 34.69617, -115.6941 34.69579, -115.694 34.69542, -115.6938 34.69506, -115.693 34.69342, -115.6928 34.69307, -115.6926 34.69273, -115.6924 34.69239, -115.6922 34.69207, -115.6919 34.69176, -115.6916 34.69146, -115.6913 34.69117, -115.691 34.6909, -115.6906 34.69064, -115.6903 34.69039, -115.6899 34.69016, -115.6895 34.68995, -115.6891 34.68975, -115.6887 34.68957, -115.6883 34.68941, -115.6879 34.68926, -115.6874 34.68914, -115.687 34.68903, -115.6865 34.68894, -115.6861 34.68887, -115.6856 34.68883, -115.6851 34.6888, -115.6847 34.68879, -115.6842 34.6888, -115.6838 34.68883, -115.6833 34.68888, -115.6828 34.68895, -115.6824 34.68903, -115.6819 34.68914, -115.6815 34.68927, -115.6811 34.68941, -115.679 34.69015, -115.6786 34.69031))",
 "Year is greater than or equal to 2001",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020596-251120083545085/datasets/export for details.
DOI: 10.17026/ar/fcwxkd
title: PAN-00135664 - knucklebone

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00135664&lt;/p&gt;
description: Modified: 2025-04-28T10:21:08+02:00
DOI: 10.6084/m9.figshare.30752477
title: <b><i>easynem</i></b><b>: an R package for evaluating soil ecological functions based on soil nematode communities</b>

description: The contribution of soil nematode communities to soil health and ecological functions has attracted increasing attention. To support this research, we developed an R package <i>easynem</i>, which enables convenient calculation of nematode ecological indices and visualization of the results, providing a theoretical basis for evaluating soil health and ecological functioning. This package utilizes soil nematode abundance and taxonomic information to efficiently filter and transform community data; compute more than a dozen ecological indices—such as the maturity index (MI) and plant parasitic index (PPI); perform faunal analysis, metabolic footprint analysis, and energy structure assessments; and generate visual representations of the results. To validate the reliability of <i>easynem</i> in evaluating soil ecosystem functions, we applied it to a nematode dataset from a kiwifruit orchard cover crop experiment. We calculated ecological indices under different cover crop treatments and analyzed the metabolic footprints and energy structure of the nematode communities. The analysis revealed that cover crops improved the soil food web, with the eight-species mixture creating the most uniform energy structure, demonstrating that the package can effectively translate nematode data into meaningful ecological insights. Ultimately, <i>easynem</i> provides a robust and accessible tool that streamlines the complex calculations required for nematode-based assessments, facilitating broader research into soil health.
DOI: 10.6084/m9.figshare.30752477.v2
title: <b><i>easynem</i></b><b>: an R package for evaluating soil ecological functions based on soil nematode communities</b>

description: The contribution of soil nematode communities to soil health and ecological functions has attracted increasing attention. To support this research, we developed an R package <i>easynem</i>, which enables convenient calculation of nematode ecological indices and visualization of the results, providing a theoretical basis for evaluating soil health and ecological functioning. This package utilizes soil nematode abundance and taxonomic information to efficiently filter and transform community data; compute more than a dozen ecological indices—such as the maturity index (MI) and plant parasitic index (PPI); perform faunal analysis, metabolic footprint analysis, and energy structure assessments; and generate visual representations of the results. To validate the reliability of <i>easynem</i> in evaluating soil ecosystem functions, we applied it to a nematode dataset from a kiwifruit orchard cover crop experiment. We calculated ecological indices under different cover crop treatments and analyzed the metabolic footprints and energy structure of the nematode communities. The analysis revealed that cover crops improved the soil food web, with the eight-species mixture creating the most uniform energy structure, demonstrating that the package can effectively translate nematode data into meaningful ecological insights. Ultimately, <i>easynem</i> provides a robust and accessible tool that streamlines the complex calculations required for nematode-based assessments, facilitating broader research into soil health.
DOI: 10.6084/m9.figshare.30752477.v1
title: <b><i>easynem</i></b><b>: an R package for evaluating soil ecological functions based on soil nematode communities</b>

description: The contribution of soil nematode communities to soil health and ecological functions has attracted increasing attention. To support this research, we developed an R package <i>easynem</i>, which enables convenient calculation of nematode ecological indices and visualization of the results, providing a theoretical basis for evaluating soil health and ecological functioning. This package utilizes soil nematode abundance and taxonomic information to efficiently filter and transform community data; compute more than a dozen ecological indices—such as the maturity index (MI) and plant parasitic index (PPI); perform faunal analysis, metabolic footprint analysis, and energy structure assessments; and generate visual representations of the results. To validate the reliability of <i>easynem</i> in evaluating soil ecosystem functions, we applied it to a nematode dataset from a kiwifruit orchard cover crop experiment. We calculated ecological indices under different cover crop treatments and analyzed the metabolic footprints and energy structure of the nematode communities. The analysis revealed that cover crops improved the soil food web, with the eight-species mixture creating the most uniform energy structure, demonstrating that the package can effectively translate nematode data into meaningful ecological insights. Ultimately, <i>easynem</i> provides a robust and accessible tool that streamlines the complex calculations required for nematode-based assessments, facilitating broader research into soil health.
DOI: 10.25318/3310107001-fra
title: Mesures prévues au cours des 12 prochains mois par l’entreprise ou l’organisme en raison de tout droit de douane imposé par les États-Unis sur les importations du Canada, quatrième trimestre de 2025

description: Mesures prévues au cours des 12 prochains mois par l’entreprise ou l’organisme en raison de tout droit de douane imposé par les États-Unis sur les importations du Canada, selon le Système de classification des industries de l’Amérique du Nord (SCIAN), l’effectif de l’entreprise, le type d’entreprise, l’activité de l'entreprise et le propriétaire majoritaire, quatrième trimestre de 2025.
DOI: 10.15468/dl.mry4ku
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Allantophomopsiella",
 "HasCoordinate is true"
 ]
}

 The dataset includes 151 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020597-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30752708
title: Data Research

description: Data Research
DOI: 10.6084/m9.figshare.30752708.v1
title: Data Research

description: Data Research