cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17210691
title: NMR Test from Triaxial testing on water permeability evolution of fractured shale

description: Data for NMR Test
DOI: 10.5281/zenodo.5784868
title: Synaptic plasticity model datasets

description: These datasets are used to reproduce the results of the synaptic plasticity model from the paper https://doi.org/10.1101/725382.
DOI: 10.5281/zenodo.5784867
title: Synaptic plasticity model datasets

description: These datasets are used to reproduce the results of the synaptic plasticity model from the paper https://doi.org/10.1101/725382.
DOI: 10.5281/zenodo.5784905
title: Interpolation coefficients to go from LLC90 grid to 1/2 degree grid

description: Interpolation coefficients to go from LLC90 grid to 1/2 degree grid. Created using MeshArrays.jl 's InterpolationFactors function
DOI: 10.5281/zenodo.5784904
title: Interpolation coefficients to go from LLC90 grid to 1/2 degree grid

description: Interpolation coefficients to go from LLC90 grid to 1/2 degree grid. Created using MeshArrays.jl 's InterpolationFactors function
DOI: 10.6084/m9.figshare.16618255
title: Pearl River estuary microbiome and virome

description: <b>Project description:</b> Deep metagenomic sequencing on microbial and viral communities in surface waters of the Pearl River estuary (PRE), a typical subtropical. <b>Data description: </b>Data for assembly, MAGs, viral like contigs and populations generated using the PRE microbial metagenomic data sets - data includes:PRET1608S??F00_idba-ud_final.fna.gz: the contigs generated from virome(&lt;0.2 μm) (5 files).PRET1608S??F0{2/7}_megahit_final.fna.gz: the contigs generated from cellular metagenome(0.2-0.7 μm and 0.7-2.7μm) (10 files).PRET1608S??F0{2/7}_MAGs.tar.gz: MAGs with ≥ 50% completeness and ≤ 10% contamination of each metagenome.<br>PRE_all_dereplicated_MAGs.tar.gz: 1,205 non-redundant prokaryotic genomes with ≥ 50% completeness and ≤ 10% contamination.<br>PRE_viral_contigs.fasta: Putative viral contigs identified from contigs of all the three size fractions in PRE (1 file).PRE_viral_contigs_95-80.fna: Viral populations based on 95% nucleotide identity and 80% of the genome coverage criterion (1 file).Supplementary Table 1: Statistics for each of the prokaryotic draft genomes, including completion and contamination. <br>Supplementary Table 2: The distribution of each viral population in each PRE metagenome and the taxonomy assignment of each viral population at family level.<br>Supplementary Table 3: The statistics for each viral populations determined by checkV, including the length and completeness.<br>SupplementalInformation1-6: the alignment, tree file and iTOL profile of bacterial and archaeal MAGs.SupplementalInformation7: The name match between the sra files and libraries deposited in NCBI, the assembly files , genome files deposited in figshare and the alias referenced in the Tables and Supplementary Tables.
DOI: 10.5519/qd.hfxurcth
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1052 records)
DOI: 10.5281/zenodo.5784832
title: ATP-responsive biomolecular condensates tune bacterial kinase signaling

description: Imaging and biochemical analyses data from the manuscript.
DOI: 10.6084/m9.figshare.17209718
title: Novel behavioral model in evaluating initiation and sustenance of brushing behavior among students pursuing health sciences.

description: The data excel sheet for the study titled Novel behavioral model in evaluating initiation and sustenance of brushing behavior among students pursuing health sciences.
DOI: 10.6084/m9.figshare.17211307.v1
title: System Details from Comparing system identification techniques for identifying human-like walking controllers

description: The terms in the linear models and controllers are visualized; representative results for SINDY are provided.
DOI: 10.6084/m9.figshare.17211307
title: System Details from Comparing system identification techniques for identifying human-like walking controllers

description: The terms in the linear models and controllers are visualized; representative results for SINDY are provided.
DOI: 10.5281/zenodo.5784923
title: ATP-responsive biomolecular condensates tune bacterial kinase signaling

description: Imaging and biochemical analyses data from the manuscript.
DOI: 10.5281/zenodo.5675956
title: ATP-responsive biomolecular condensates tune bacterial kinase signaling

description: Imaging and biochemical analyses data from the manuscript.
DOI: 10.6084/m9.figshare.17211427
title: Model code from Robust finite automata in stochastic chemical reaction networks

description: Python code and Jupyter notebook for model creation, data analysis, and plotting
DOI: 10.6084/m9.figshare.17211427.v1
title: Model code from Robust finite automata in stochastic chemical reaction networks

description: Python code and Jupyter notebook for model creation, data analysis, and plotting
DOI: 10.6084/m9.figshare.17211667
title: Info Trans from Hunter–Gatherer foraging networks promote information transmission

description: Central-place foraging (CPF), where foragers return to a central location (or home), is a key feature of hunter–gatherer social organization. CPF could have significantly changed hunter–gatherers’ spatial use and mobility, and altered social networks and increased opportunities for information-exchange. We evaluated whether CPF patterns facilitate information-transmission and considered the potential roles of environmental conditions, mobility strategies and population sizes. We built an agent-based model of CPF where agents moved according to a simple optimal foraging rule, and could encounter other agents as they moved across the environment. They either foraged close to their home within a given radius or moved the location of their home to new areas. We analysed the interaction networks arising under different conditions, and found that, at intermediate levels of environmental heterogeneity and mobility, CPF increased global and local network efficiencies as well as the rate of contagion-based information-transmission. We also found that central-place mobility strategies can further improve information transmission in larger populations. Our findings suggest that the combination of foraging and movement strategies, as well as the environmental conditions that characterized early human societies, may have been a crucial precursor in our species’ unique capacity to innovate, accumulate and rely on complex culture.
DOI: 10.6084/m9.figshare.17211667.v1
title: Info Trans from Hunter–Gatherer foraging networks promote information transmission

description: Central-place foraging (CPF), where foragers return to a central location (or home), is a key feature of hunter–gatherer social organization. CPF could have significantly changed hunter–gatherers’ spatial use and mobility, and altered social networks and increased opportunities for information-exchange. We evaluated whether CPF patterns facilitate information-transmission and considered the potential roles of environmental conditions, mobility strategies and population sizes. We built an agent-based model of CPF where agents moved according to a simple optimal foraging rule, and could encounter other agents as they moved across the environment. They either foraged close to their home within a given radius or moved the location of their home to new areas. We analysed the interaction networks arising under different conditions, and found that, at intermediate levels of environmental heterogeneity and mobility, CPF increased global and local network efficiencies as well as the rate of contagion-based information-transmission. We also found that central-place mobility strategies can further improve information transmission in larger populations. Our findings suggest that the combination of foraging and movement strategies, as well as the environmental conditions that characterized early human societies, may have been a crucial precursor in our species’ unique capacity to innovate, accumulate and rely on complex culture.
DOI: 10.26180/17209493
title: MWithers_PhDThesis_Appendices

description: Appendices containing data used in my PhD thesis
DOI: 10.26180/17209493.v1
title: MWithers_PhDThesis_Appendices

description: Appendices containing data used in my PhD thesis
DOI: 10.6084/m9.figshare.17211731
title: Supplementary Material for: A Simple and Rapid Light-Initiated Chemiluminescence Assay for Quantitation of <b><i>Artemisia</i></b>-Specific Immunoglobulin E

description: <b><i>Background:</i></b> Light-initiated chemiluminescence assay (LICA) is a homogeneous assay that has been successfully used for the quantitation of food allergen-specific immunoglobulin E (sIgE), but not inhaled allergen-sIgE. Simultaneously, current assays used to detect allergen-sIgE are serum consuming and/or time consuming. Hence, we established a method for the quantitation of <i>Artemisia</i>-sIgE based on LICA and verified its performance according to the clinical guideline documents, laying a foundation for the quantitation of inhaled and food allergen-sIgE in parallel on LICA. <b><i>Methods:</i></b> The assay was established after optimizing the first incubation time and the dilutions of <i>Artemisia</i>-coated chemibeads, biotinylated goat anti-human IgE, and serum. In order to quantitate <i>Artemisia</i>-sIgE, the calibration curve was established with a high positive serum of known concentration. The assay performance was confirmed per the clinical guideline documents. In addition, the correlation between the results of LICA and capture enzyme-linked immunosorbent assay was evaluated. <b><i>Results:</i></b> The developed LICA’s coefficients of variation of repeatability and intermediate precision were 3.20%, 2.14%, and 3.85% and 4.30%, 4.00%, and 4.40%, respectively. The limit of detection was 0.10 kU<sub>A</sub>/L, and the limit of quantitation was 0.11 kU<sub>A</sub>/L. The range of linearity was from 0.27 kU<sub>A</sub>/L to 97.53 kU<sub>A</sub>/L (<i>r</i> = 0.9968). The correlation coefficient (<i>r</i>) for the correlation analysis between results of LICA and capture ELISA was 0.9087. This assay was successfully applied in 64 human serum samples, showing good sensitivity (82.20%) and specificity (100%). <b><i>Conclusion:</i></b> An <i>Artemisia</i>-sIgE quantitation assay based on LICA was successfully established. Its performance satisfied the clinical requirements and could be widely used in clinical laboratories.
DOI: 10.6084/m9.figshare.17211731.v1
title: Supplementary Material for: A Simple and Rapid Light-Initiated Chemiluminescence Assay for Quantitation of <b><i>Artemisia</i></b>-Specific Immunoglobulin E

description: <b><i>Background:</i></b> Light-initiated chemiluminescence assay (LICA) is a homogeneous assay that has been successfully used for the quantitation of food allergen-specific immunoglobulin E (sIgE), but not inhaled allergen-sIgE. Simultaneously, current assays used to detect allergen-sIgE are serum consuming and/or time consuming. Hence, we established a method for the quantitation of <i>Artemisia</i>-sIgE based on LICA and verified its performance according to the clinical guideline documents, laying a foundation for the quantitation of inhaled and food allergen-sIgE in parallel on LICA. <b><i>Methods:</i></b> The assay was established after optimizing the first incubation time and the dilutions of <i>Artemisia</i>-coated chemibeads, biotinylated goat anti-human IgE, and serum. In order to quantitate <i>Artemisia</i>-sIgE, the calibration curve was established with a high positive serum of known concentration. The assay performance was confirmed per the clinical guideline documents. In addition, the correlation between the results of LICA and capture enzyme-linked immunosorbent assay was evaluated. <b><i>Results:</i></b> The developed LICA’s coefficients of variation of repeatability and intermediate precision were 3.20%, 2.14%, and 3.85% and 4.30%, 4.00%, and 4.40%, respectively. The limit of detection was 0.10 kU<sub>A</sub>/L, and the limit of quantitation was 0.11 kU<sub>A</sub>/L. The range of linearity was from 0.27 kU<sub>A</sub>/L to 97.53 kU<sub>A</sub>/L (<i>r</i> = 0.9968). The correlation coefficient (<i>r</i>) for the correlation analysis between results of LICA and capture ELISA was 0.9087. This assay was successfully applied in 64 human serum samples, showing good sensitivity (82.20%) and specificity (100%). <b><i>Conclusion:</i></b> An <i>Artemisia</i>-sIgE quantitation assay based on LICA was successfully established. Its performance satisfied the clinical requirements and could be widely used in clinical laboratories.
DOI: 10.6084/m9.figshare.16884682
title: Supplementary Material for: Beneficial effects of cardiomyopathy-associated genetic variants on physical performance: a hypothesis-generating scoping review

description: Background Genetic variants associated with cardiomyopathies (CMPs) are prevalent in the general population. In young athletes, CMPs account for roughly a quarter of sudden cardiac death, with further unexplained clustering in specific sports. Consequently, most CMPs form a contra-indication for competitive sports. We hypothesized that genetic variants might (paradoxically) improve physical performance early in life while impairing cardiac function later in life. Methods Systematic PubMed search to investigate whether genetic variants in genes associated with CMPs could be related to beneficial performance phenotypes. Summary In a limited number of studies (n=6), 2860 individuals/ subjects with genetic variants were able to outperform those without said variants, as measured by running speed (~38 m/min in heterozygous (HET) mice, n=6 vs ~32 m/min in wild type (WT) mice, n=7, P=0.004) and distance (966±169 km HET mice vs 561±144 km WT mice, P=0.0035, n=10), elite athlete status in endurance athletes (n=1672, P=1.43*10-8), maximal oxygen uptake in elite athletes (absolute difference not provided, n=32, P=0.005), maximal oxygen uptake in unrelated individuals (n=473, P=0.0025), personal records in highly trained marathon runners (2:26:28±0:06:23 min HET, n=32 vs. 2:28:53±0:05:50 min without polymorphism, n=108, P=0.020), and peripheral muscle force contraction in patients following a cardiac rehabilitation programme (absolute values not provided, n=260). Key message Beneficial effects in genetic variants associated with CMPs could hypothetically play a role in the selection of young athletes, consequently explaining the prevalence of such genetic variants in athletes and the general population.
DOI: 10.6084/m9.figshare.16599896.v1
title: MBRC Wildlife Crossing Data

description: Raw Dataset of wildlife crossings within MBRC, relating to Australian Mammalogy Journal
DOI: 10.6084/m9.figshare.16622257
title: Supplementary Material for: Increased expression of miR-7a-5p and miR-592 during expansion of rat dental pulp stem cells and their implication in osteogenic differentiation

description: Medicine
DOI: 10.6084/m9.figshare.17211737
title: Supplementary item 8 - Transcription factor orthogroup trees

description: The TF orthogroup protein-trees generated in this study (for the orthogroups OG0000000 &gt; OG0000591). These are in Newick format and can be visualised in the reader's chosen tree-viewing platform such as iTOL (Letunic and Bork, 2019). The branch lengths are defined by the DendroBLAST distance measure (Kelly and Maini, 2013).
DOI: 10.6084/m9.figshare.17209637.v1
title: Identification of erythrocyte receptors for PfGAMA-Tr3 by affinity chromatograph and mass spectrometry

description: Raw mass spectrometry data of co-affinity purification with His-tagged PfGAMA-Tr3 protein using erythrocyte membrane proteins
DOI: 10.6084/m9.figshare.17209637
title: Identification of erythrocyte receptors for PfGAMA-Tr3 by affinity chromatograph and mass spectrometry

description: Raw mass spectrometry data of co-affinity purification with His-tagged PfGAMA-Tr3 protein using erythrocyte membrane proteins
DOI: 10.5517/ccdc.csd.cc24fwhz
title: CCDC 1979551: Experimental Crystal Structure Determination

description: Related Article: Annunziata Soriente, Mariantonietta D’Acunto, Carmen Talotta, Carmine Gaeta, Paolo Della Sala, Margherita De Rosa, Silvano Geremia, Neal Hickey, Antonio Rescifina, Placido Neri|2021|Org.Lett.|23|9283|doi:10.1021/acs.orglett.1c03643
DOI: 10.5517/ccdc.csd.cc28q3ch
title: CCDC 2106616: Experimental Crystal Structure Determination

description: Related Article: Wenchao Yan, Liding Wang, Hao Qi, Ge Zhan, Peiyu Fang, Zhiwei Liu, Zuqiang Bian|2021|Inorg.Chem.|60|18103|doi:10.1021/acs.inorgchem.1c02711
DOI: 10.5517/ccdc.csd.cc28q3dj
title: CCDC 2106617: Experimental Crystal Structure Determination

description: Related Article: Wenchao Yan, Liding Wang, Hao Qi, Ge Zhan, Peiyu Fang, Zhiwei Liu, Zuqiang Bian|2021|Inorg.Chem.|60|18103|doi:10.1021/acs.inorgchem.1c02711
DOI: 10.5517/ccdc.csd.cc28q3gl
title: CCDC 2106619: Experimental Crystal Structure Determination

description: Related Article: Wenchao Yan, Liding Wang, Hao Qi, Ge Zhan, Peiyu Fang, Zhiwei Liu, Zuqiang Bian|2021|Inorg.Chem.|60|18103|doi:10.1021/acs.inorgchem.1c02711
DOI: 10.5517/ccdc.csd.cc28q58g
title: CCDC 2106675: Experimental Crystal Structure Determination

description: Related Article: Qiuming Liang, Datong Song|2021|Organometallics|40|3943|doi:10.1021/acs.organomet.1c00515
DOI: 10.5517/ccdc.csd.cc28q5bj
title: CCDC 2106677: Experimental Crystal Structure Determination

description: Related Article: Qiuming Liang, Datong Song|2021|Organometallics|40|3943|doi:10.1021/acs.organomet.1c00515
DOI: 10.5517/ccdc.csd.cc28q5ck
title: CCDC 2106678: Experimental Crystal Structure Determination

description: Related Article: Qiuming Liang, Datong Song|2021|Organometallics|40|3943|doi:10.1021/acs.organomet.1c00515
DOI: 10.5517/ccdc.csd.cc28q57f
title: CCDC 2106674: Experimental Crystal Structure Determination

description: Related Article: Qiuming Liang, Datong Song|2021|Organometallics|40|3943|doi:10.1021/acs.organomet.1c00515
DOI: 10.5517/ccdc.csd.cc28q59h
title: CCDC 2106676: Experimental Crystal Structure Determination

description: Related Article: Qiuming Liang, Datong Song|2021|Organometallics|40|3943|doi:10.1021/acs.organomet.1c00515
DOI: 10.5517/ccdc.csd.cc2829f3
title: CCDC 2087584: Experimental Crystal Structure Determination

description: Related Article: Ayan Chakraborty, Souryadip Roy, Manas Pratim Chakraborty, Shantanu Saha Roy, Kallol Purkait, Tuhin Subhra Koley, Rahul Das, Moulinath Acharya, Arindam Mukherjee|2021|Inorg.Chem.|60|18379|doi:10.1021/acs.inorgchem.1c02979
DOI: 10.5517/ccdc.csd.cc2829d2
title: CCDC 2087583: Experimental Crystal Structure Determination

description: Related Article: Ayan Chakraborty, Souryadip Roy, Manas Pratim Chakraborty, Shantanu Saha Roy, Kallol Purkait, Tuhin Subhra Koley, Rahul Das, Moulinath Acharya, Arindam Mukherjee|2021|Inorg.Chem.|60|18379|doi:10.1021/acs.inorgchem.1c02979
DOI: 10.5517/ccdc.csd.cc28xnkf
title: CCDC 2112915: Experimental Crystal Structure Determination

description: Related Article: Ksenia V. Drozd, Alex N. Manin, Denis E. Boycov, Andrei V. Churakov, German L. Perlovich|2021|Cryst.Growth Des.|21|7285|doi:10.1021/acs.cgd.1c01139
DOI: 10.5517/ccdc.csd.cc28xnlg
title: CCDC 2112916: Experimental Crystal Structure Determination

description: Related Article: Ksenia V. Drozd, Alex N. Manin, Denis E. Boycov, Andrei V. Churakov, German L. Perlovich|2021|Cryst.Growth Des.|21|7285|doi:10.1021/acs.cgd.1c01139
DOI: 10.5517/ccdc.csd.cc28xnmh
title: CCDC 2112917: Experimental Crystal Structure Determination

description: Related Article: Ksenia V. Drozd, Alex N. Manin, Denis E. Boycov, Andrei V. Churakov, German L. Perlovich|2021|Cryst.Growth Des.|21|7285|doi:10.1021/acs.cgd.1c01139
DOI: 10.5517/ccdc.csd.cc28xnnj
title: CCDC 2112918: Experimental Crystal Structure Determination

description: Related Article: Ksenia V. Drozd, Alex N. Manin, Denis E. Boycov, Andrei V. Churakov, German L. Perlovich|2021|Cryst.Growth Des.|21|7285|doi:10.1021/acs.cgd.1c01139
DOI: 10.5517/ccdc.csd.cc28xnpk
title: CCDC 2112919: Experimental Crystal Structure Determination

description: Related Article: Ksenia V. Drozd, Alex N. Manin, Denis E. Boycov, Andrei V. Churakov, German L. Perlovich|2021|Cryst.Growth Des.|21|7285|doi:10.1021/acs.cgd.1c01139
DOI: 10.5517/ccdc.csd.cc28zyfn
title: CCDC 2115112: Experimental Crystal Structure Determination

description: Related Article: Shan Yang, Biqiong Hong, Jia Feng, Zhenhua Gu|2021|Org.Lett.|23|9179|doi:10.1021/acs.orglett.1c03484
DOI: 10.15468/dl.xdae2t
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polycarpaea hayoides D.F.Chamb."
 ]
}

 The dataset includes 13 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075740-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u8yqtd
title: Occurrence Download

description: A dataset containing 558 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Photinia griffithii Decne."
 ]
}

 The dataset includes 558 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075741-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.568fkj
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pimpinella yunnanensis (Franch.) H.Wolff"
 ]
}

 The dataset includes 136 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075742-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2n9r6k
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pleocnemia megaphylla Holttum"
 ]
}

 The dataset includes 22 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075743-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8j34a5
title: Occurrence Download

description: A dataset containing 4329 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plantago depressa Willd."
 ]
}

 The dataset includes 4329 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075744-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9wj8y
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllopentas schumanniana (K.Krause) Kårehed & B.Bremer"
 ]
}

 The dataset includes 81 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075745-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fqr3fh
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polycarpaea helichrysoides H.Perrier"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075746-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.