cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.xpnvx0kmp
title: Data from: A few essential genetic loci distinguish Penstemon species with flowers adapted to pollination by bees or hummingbirds

description: In the formation of species, adaptation by natural selection generates
 distinct combinations of traits that function well together. The
 maintenance of adaptive trait combinations in the face of gene flow
 depends on the strength and nature of selection acting on the underlying
 genetic loci. Floral pollination syndromes exemplify the evolution of
 trait combinations adaptive for particular pollinators. The North American
 wildflower genus Penstemon displays remarkable floral syndrome
 convergence, with at least 20 separate lineages that have evolved from
 ancestral bee pollination syndrome (wide blue-purple flowers that present
 a landing platform for bees and small amounts of nectar) to hummingbird
 pollination syndrome (bright red narrowly tubular flowers offering copious
 nectar). Related taxa that differ in floral syndrome offer an attractive
 opportunity to examine the genomic basis of complex trait divergence. In
 this study, we characterized genomic divergence among 229 individuals from
 a Penstemon species complex that includes both bee and hummingbird floral
 syndromes. Field plants are easily classified into species based on
 phenotypic differences and hybrids displaying intermediate floral
 syndromes are rare. Despite unambiguous phenotypic differences, genomewide
 differentiation between species is minimal. Hummingbird-adapted
 populations are more genetically similar to nearby bee-adapted populations
 than to geographically distant hummingbird-adapted populations, in terms
 of genomewide dXY. However, a small number of genetic loci are strongly
 differentiated between species. These ~ 20 "species-diagnostic
 loci", which appear to have nearly fixed differences between
 pollination syndromes, are sprinkled throughout the genome in high
 recombination regions. Several map closely to previously established
 floral trait QTLs. The striking difference between the diagnostic loci and
 the genome as whole suggests strong selection to maintain distinct
 combinations of traits, but with sufficient gene flow to homogenize the
 genomic background. A surprisingly small number of alleles confer
 phenotypic differences that form the basis of species identity in this
 species complex.
DOI: 10.57745/yxnwzk
title: TaBW280k - marker mapping on various reference sequences

description: TaBW420k marker mapping on various wheat reference genomes Mapping done with https://forgemia.inra.fr/umr-gdec/nf-remapmarkers
DOI: 10.15468/dl.f4tg2m
title: Occurrence Download

description: A dataset containing 392218 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Country is Sweden"
 ]
}

 The dataset includes 392218 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003549-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.1jwstqk15
title: Equity, community, and accountability: Leveraging a department-level climate survey as a tool for action

description: Organizational climate is a key determinant of diverse aspects of success
 in work settings, including in academia. Power dynamics in higher
 education can result in inequitable experiences of workplace climate,
 potentially harming the well-being and productivity of employees.
 Quantifying experiences of climate across employment categories can help
 identify changes necessary to create a more equitable workplace for all.
 We developed and administered a climate survey within our academic
 workplace—the Department of Zoology and Physiology at the University of
 Wyoming—to evaluate experiences of climate across three employment
 categories: faculty, graduate students, and staff. Our survey included a
 combination of closed-response (e.g., Likert-scale) and open-ended
 questions. Most department members (82%) completed the survey, which was
 administered in fall 2021. Faculty generally reported more positive
 experiences than staff. Graduate students often fell between these two
 groups, though in some survey sections (e.g., mental health and
 well-being) students reported the most negative experiences of
 departmental climate. Three common themes emerged from the analysis of
 open-ended responses: equity, community, and accountability. We discuss
 how these themes correspond to concrete action items for improving our
 departmental climate, some of which have been implemented already, while
 others constitute future initiatives and/or require a collective push
 towards systemic change in academia. Finally, service work of this type
 often falls outside of job descriptions, requiring individuals to either
 work more or trade-off productivity in other areas that are formally
 evaluated. With the goal of minimizing this burden for others, we detail
 our process and provide the materials and framework necessary to
 streamline this process for other departments aiming to evaluate workplace
 climate as a key first step in building a positive work environment for
 all employees.
description: All methodological information can be found in the attached
 metadata file entitled
 "README_PONE-D-23-00732_ClimateSurveyResponses". 
description: No special programs and/or software are required to open our data
 files. We used Program R to format and analyze data in the manuscript. All
 R packages and functions needed to interpret the data are cited in the
 manuscript.
DOI: 10.48717/axax-em88
title: EVN Observation RS004
DOI: 10.48717/4j73-tr32
title: EVN Experiment RS004
DOI: 10.5061/dryad.vt4b8gtz6
title: Data from: Quantifying the impact of crop coverings on honey bee orientation and foraging in sweet cherry orchards using RFID

description: Advancements in agricultural production have seen the rapid adoption of
 protected cropping systems globally. Such systems have been optimised for
 plant growth and efficiency, with little understanding of the potential
 impacts on key insect pollinators. Here we investigate the effect of
 netting and polythene rain covers on the health and performance of honey
 bees (Apis mellifera L.) during the pollination of sweet cherry crops.
 Over two consecutive seasons, twelve full-strength colonies were equipped
 with tagged bees and radio frequency identification (RFID) systems. The
 colonies were equally divided between open control, netted, and polythene
 (semi-permanent VOEN in 2019 and retractable Cravo in 2020) groups. Over
 1,300 individual bees were monitored for the duration of the commercial
 pollination period to determine behavioural parameters such as foraging
 commencement age, number and duration of trips, and overall survival. Bees
 began foraging within the optimum age range (mean 15.7-24.1 days) under
 all covering types, with little indication of prolonged stress or
 increased mortality during the short season. Polythene covers (VOEN
 & Cravo) were found to significantly increase the total time
 needed for bees to orientate successfully. Once orientated, bees placed
 under covers conducted up to 155% more foraging trips, with a longer
 cumulative duration. Covering type was found to significantly impact the
 amount and type of pollen collected, with the most restrictive system
 (VOEN) yielding the highest proportion of cherry pollen. Overall, we found
 little evidence to suggest that protective covers have a detrimental
 impact on honey bee foraging in cherry crops.
DOI: 10.5281/zenodo.18403010
title: YOLO-CIANNA-3D: Galaxy detection with deep learning. SKAO SDC2 related codes, models and predicted source catalogs.

description: This deposit contains various files associated with the article Cornu et al. (2026, A&A) entitled “YOLO-CIANNA: Galaxy detection with deep learning in radio data. II. Winning the SKA SDC2 using a generalized 3D-YOLO network”. The aim of this deposit is to publish, reference, and archive codes, trained models, ancillary data, and source catalogs associated with the article to ensure reproducibility and enable future works.

The archive is organized into sub-folders as follows:



codes: Source codes and script files allowing to reproduce the results presented in the article (mostly Python scripts and notebooks).

models: Trained models save states (final weights) in binary format.

metadata: Subsets of quantities that are required for using each trained model (mostly normalization scaling factors).

catalogs: All source catalogs presented in the article in a plain text format, obtained from using the provided models.


All file names for models, catalogs, and metadata should be self-explanatory and correspond to the naming convention from Cornu et al. (2026).See the README.md file for more details on how to use the content of this deposit.
DOI: 10.5281/zenodo.18403011
title: YOLO-CIANNA-3D: Galaxy detection with deep learning. SKAO SDC2 related codes, models and predicted source catalogs.

description: This deposit contains various files associated with the article Cornu et al. (2026, A&A) entitled “YOLO-CIANNA: Galaxy detection with deep learning in radio data. II. Winning the SKA SDC2 using a generalized 3D-YOLO network”. The aim of this deposit is to publish, reference, and archive codes, trained models, ancillary data, and source catalogs associated with the article to ensure reproducibility and enable future works.

The archive is organized into sub-folders as follows:



codes: Source codes and script files allowing to reproduce the results presented in the article (mostly Python scripts and notebooks).

models: Trained models save states (final weights) in binary format.

metadata: Subsets of quantities that are required for using each trained model (mostly normalization scaling factors).

catalogs: All source catalogs presented in the article in a plain text format, obtained from using the provided models.


All file names for models, catalogs, and metadata should be self-explanatory and correspond to the naming convention from Cornu et al. (2026).See the README.md file for more details on how to use the content of this deposit.
DOI: 10.48717/gq4r-6x04
title: EVN Observation EW052B
DOI: 10.48717/7e11-mk34
title: EVN Experiment EW052
DOI: 10.5061/dryad.6t1g1jx4m
title: Data from: Past population control biases interpretations of contemporary genetic data: implications for future invasive Sitka black-tailed deer management in Haida Gwaii

description: Invasive species management practices often include genetic analyses to
 better inform decision-making and resource allocation. Yet, past
 management actions may artificially bias recovered patterns of genetic
 variation; for example, a population bottleneck caused by contemporary
 culling may mirror some patterns associated with historical isolation.
 Here, we aimed to disentangle the impacts of past management activities
 from natural processes for Sitka black-tailed deer (Odocoileus hemionus
 sitkensis), an invasive species that has been repeatedly culled on two
 islands, SGang Gwaay and Reef, within the Haida Gwaii archipelago
 (Canada). We applied a recently developed Genotyping-in-Thousands by
 sequencing panel to contemporary (e.g., blood, serum, tissue, muscle,
 feces) and archived deer samples, the latter collected prior to management
 activity within the system (c. 1997–1998), which allowed us to
 contextualize conflicting patterns of isolation and connectivity
 previously observed on SGang Gwaay and Reef. Successful genotyping (92.6%)
 and population genetic analysis of 292 individuals at 236 SNPs revealed
 signals of historical isolation on SGang Gwaay and Reef, provided evidence
 of a founder effect during initial colonization, and indicated an absence
 of ongoing gene flow. Furthermore, our spatiotemporal analyses
 consistently supported a priori predictions associated with bottlenecks
 within post-cull populations, such as within-island loss of genetic
 variation, elevated within-island kinship, and increased levels of
 among-island genetic differentiation. These findings are promising for
 future management of deer on SGang Gwaay and Reef, suggesting that
 eradications on these islands may be durable. More broadly, our work
 highlights the importance of understanding management history before
 interpreting contemporary population genetic data.
description: Samples were genotyped using a Genotyping-in-Thousands by
 sequencing (GTseq; Campbell et al. 2015) panel developed in Burgess et al.
 (2022; https://doi.org/10.1002/ece3.8993) following the modified protocol therein. Raw data were processed using the GTseq workflow (https://github.com/GTseq).
description: 236loci_292deer.ped: ped file of
 genotypic data at 236 SNPs collected via GTseq for 292 deer
 samples. metadata.csv: text
 file containing individual metadata for all samples used including sample
 identifiers, location, year, sex and sample type.
DOI: 10.17172/nomad/2026.01.28-2
title: NOMAD dataset: Rh-based catalysts for CO hydrogenation - collection from literature review
DOI: 10.5061/dryad.cvdncjt8s
title: Data from: Phylogenomics and systematics of botryllid ascidians, and implications for the evolution of allorecognition

description: Allorecognition, the ability of an organism to distinguish kin from
 non-kin, or self from non-self, has been studied extensively in a group of
 invertebrate chordates, the colonial ascidians called botryllids
 (Subphylum Tunicata, Class Ascidiacea, Family Styelidae).  When
 two conspecific botryllid colonies come in contact, there are two
 potential outcomes to an allorecognition reaction: fusion or rejection.
 The rejection outcome of allorecognition varies by species and has been
 classified by type (referred to as R-type). R-type is defined
 according to how far the fusion process progresses before the rejection
 begins, since the rejection reaction appears as an interference of the
 fusion process. Here, we map evolution of R-types onto an extended and
 robust phylogeny of the botryllids. In this study, we have reconstructed
 the largest phylogenomic tree of botryllids, including 98 samples and more
 than 40 different species, and mapped on it nine of the 12 species for
 which the R-type is known. Based on the R-type known in a single outgroup
 species (Symplegma reptans), we infer that at least R-Type B and E are
 ancestral to the Botrylloides/Botryllus group. However, based on the most
 basal botryllid clade, the R-Ttype D could also be considered the
 botryllid ancestral R-type. The R-Type A species are all clustered
 together and certainly evolved later than R-Type B and E. Our phylogenomic
 tree has been built on 200 nuclear loci, but it also takes into account
 the results of species delimitation analyses based on the mitochondrial
 COI gene and careful morphological analyses of the samples. The
 implementation of this integrated taxonomic approach, combining
 morphological as well as nuclear and mitochondrial data, has allowed the
 description of six new species and the identification of a number of
 putative unnamed taxa.  Our results demonstrate the existence of
 an unexplored hidden diversity within botryllids. 
description: # Data from: Phylogenomics and systematics of botryllid ascidians, and
 implications for the evolution of allorecognition In this dataset there
 are five categories of files. ### Category #1: All single gene alignment
 files (177) Name of Zip file: Single_gene_alignment_files.7z ### Category
 #2: All single gene tree files (177) Name of Zip file:
 Single_gene_tree_file.7z ### Category #3: The concatenation file (1) Name:
 T641_Nydam_Botryllidae_ConcatLoci.phylip ### Category #4: The RAxML
 species tree file (1) Name: RAXML__1.T64 ### Category #5: The Astral
 species tree file (1) Name: outBestTreeAstral.tre
DOI: 10.48717/qe74-tg80
title: EVN Observation EM181A
DOI: 10.48717/bz1r-zz75
title: EVN Experiment EM181
DOI: 10.5061/dryad.fttdz08zx
title: Data for: Complex battlefields favor strong soldiers over large armies in social animal warfare

description: In social animals, success can depend on the outcome of group battles.
 Theoretical models of warfare predict that group fighting ability is
 proportional to two key factors: the strength of each soldier in the group
 and group size. The relative importance of these factors is predicted to
 vary across environments [F. W. Lanchester, Aircraft in Warfare, the Dawn
 of the Fourth Arm (1916)]. Here, we provide an empirical validation of the
 theoretical prediction that open environments should favor superior
 numbers, whereas complex environments should favor stronger soldiers [R.
 N. Franks, L. W. Partridge, Anim. Behav. 45, 197–199 (1993)]. We first
 demonstrate this pattern using simulated battles between relatively strong
 and weak soldiers in a computer-driven algorithm. We then validate this
 result in real animals using an ant model system: In battles in which the
 number of strong native meat ant Iridomyrmex purpureus workers is constant
 while the number of weak non-native invasive Argentine ant Linepithema
 humile workers increases across treatments, fatalities of I. purpureus are
 lower in complex than in simple arenas. Our results provide controlled
 experimental evidence that investing in stronger soldiers is more
 effective in complex environments. This is a significant advance in the
 empirical study of nonhuman warfare and is important for understanding the
 competitive balance among native and non-native invasive ant species.
DOI: 10.5061/dryad.fj6q5741h
title: PI3K block restores age-dependent neurovascular coupling defects associated with cerebral small vessel disease

description: Neurovascular coupling (NVC), a vital physiological process that rapidly
 and precisely directs localized blood flow to the most active regions of
 the brain, is accomplished in part by the vast network of cerebral
 capillaries acting as a sensory web capable of detecting increases in
 neuronal activity and orchestrating the dilation of upstream parenchymal
 arterioles. Here, we report a Col4a1 mutant mouse model of cerebral small
 vessel disease (cSVD) with age-dependent defects in capillary-to-arteriole
 dilation, functional hyperemia in the brain, and memory. The fundamental
 defect in aged mutant animals was the depletion of the minor membrane
 phospholipid phosphatidylinositol 4,5 bisphosphate (PIP2) in brain
 capillary endothelial cells, leading to the loss of inwardly rectifier K+
 (Kir2.1) channel activity. Blocking phosphatidylinositol-3-kinase (PI3K),
 an enzyme that diminishes the bioavailability of PIP2 by converting it to
 phosphatidylinositol (3,4,5)-trisphosphate (PIP3), restored Kir2.1 channel
 activity, capillary-to-arteriole dilation, and functional hyperemia. In
 longitudinal studies, chronic PI3K inhibition also improved the memory
 function of aged Col4a1 mutant mice. Our data suggest that PI3K inhibition
 is a viable therapeutic strategy for treating defective NVC and cognitive
 impairment associated with cSVD.
DOI: 10.18742/31043503
title: PSYD_3401: CUB

description: <i>This record is part of the Psy-ShareD database. The Psy-ShareD database will host pre-existing structural MRI data collected at different global sites that will be suitable for region of interest, voxel-based morphometry, cortical thickness and surface area analytical approaches. To access this database, complete the Data Access Request Form by following the link on this page under the Licence ‘Psy-ShareD Data Access Request’. For more information, follow the link listed in Related Materials.</i><b>Title: </b><b>C</b><b>ross-Sectional</b><b> Study of Individuals with Clinical High Risk</b><b> (CHR) and First Episode Psychosis (FEP)</b><b>Contributors and PI’s:</b> Peter J. UhlhaasDept. of Child and Adolescent Psychiatry, Charité–Universitätsmedizin Berlin, Germany<br><b>Key Details & Variables</b><pre></pre><b>Age Range</b>16-35<b>Number of Participants</b>222<b>Diagnostic Criteria</b>FEP, CHR-P, CHR-N<b>Number of Clinical Subjects</b>173<b>Number of Clinical Subjects (follow-up)</b>No<b>Number of Control Subjects</b>49<b>Number of Control Subjects (follow-up)</b>No<b>Demographic Information</b>Age, Sex, Handness, Education<b>Clinical Measures</b>CAARMS, SPI-A, SCID-V<b>Cognitive Measures</b>BACS, Digit Span<b>Clinical Functioning Measures</b>GAF, Role/Social Functioninig Scales<b>Antipsychotic Medication Information Recorded</b>Yes<b>Antipsychotic Medication Name/ Antipsychotic Type</b>N/A<b>Antipsychotic Dose Recorded</b>N/A<b>CPZ Equivalents Recorded</b>N/A<b>Other Medication Variables Recorded</b>N/A<b>Recreational Drug/ Alcohol Use</b>N/A<br><br>
DOI: 10.18742/31043503.v1
title: PSYD_3401: CUB

description: <i>This record is part of the Psy-ShareD database. The Psy-ShareD database will host pre-existing structural MRI data collected at different global sites that will be suitable for region of interest, voxel-based morphometry, cortical thickness and surface area analytical approaches. To access this database, complete the Data Access Request Form by following the link on this page under the Licence ‘Psy-ShareD Data Access Request’. For more information, follow the link listed in Related Materials.</i><b>Title: </b><b>C</b><b>ross-Sectional</b><b> Study of Individuals with Clinical High Risk</b><b> (CHR) and First Episode Psychosis (FEP)</b><b>Contributors and PI’s:</b> Peter J. UhlhaasDept. of Child and Adolescent Psychiatry, Charité–Universitätsmedizin Berlin, Germany<br><b>Key Details & Variables</b><pre></pre><b>Age Range</b>16-35<b>Number of Participants</b>222<b>Diagnostic Criteria</b>FEP, CHR-P, CHR-N<b>Number of Clinical Subjects</b>173<b>Number of Clinical Subjects (follow-up)</b>No<b>Number of Control Subjects</b>49<b>Number of Control Subjects (follow-up)</b>No<b>Demographic Information</b>Age, Sex, Handness, Education<b>Clinical Measures</b>CAARMS, SPI-A, SCID-V<b>Cognitive Measures</b>BACS, Digit Span<b>Clinical Functioning Measures</b>GAF, Role/Social Functioninig Scales<b>Antipsychotic Medication Information Recorded</b>Yes<b>Antipsychotic Medication Name/ Antipsychotic Type</b>N/A<b>Antipsychotic Dose Recorded</b>N/A<b>CPZ Equivalents Recorded</b>N/A<b>Other Medication Variables Recorded</b>N/A<b>Recreational Drug/ Alcohol Use</b>N/A<br><br>