cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13386670
title: Ontology of Legal Bodies in Classical Athens v.1.0

description: Ontology of legal bodies in Classical Athens 

This is version 1.0 of a dataset created in the context  of a PhD thesis in "Semantic Annotation and Attic Oratory" that defines the primary legal bodies in Classical Athenian courts c. 419 BC to 323 BC. A legal body is defined as "an individual or group who either proceeds over or judges a legal proceeding". This work draws upon the corpus of Attic oratory and the Pseudo-Aristotelian Athenian constitution, as well as The Law of Ancient Athens by David D. Phillips.

This dataset is authored by Rachel Milio (TALOS Ph.D. candidate, Department of Philology, University of Crete), under the supervision of Dr. Maria Papadopoulou (Department of Philology, University of Crete) and Prof. Christophe Roche (TALOS ERA Chair Professor, University of Crete).

Acknowledgement: We gratefully acknowledge the generous funding of the European Commission under the ERA Chair Project TALOS AI for SSH (Grant agreement ID: 101087269).

Contact: Rachel.Milio@outlook.com
description: This version includes:

1. The .otb file. To view it, please import it in  Tedi ontoTerminology Editor

2. The .rdf file. To view it, please import it in Protégé ontology editor

3. The .html file that includes the terms (in English) 

5. The .html file that includes the terms (in Ancient Greek) 

Software:

This dataset was built with Tedi ontoTerminology Editor. Tedi ontoTerminology Editor is a software platform for the creation and management of ontoterminologies. Tedi software platform is distributed by the University of Crete (free for academic use, contact: christophe.roche@uoc.gr).

The .rdf file is queryable via a SPARQL endpoint.

Downloads:

Download the RDF/OWL file; to view the ontology metrics import this file in Protégé (open access ontology editor); to visualize the ontology import this file in VOWL

To view the .html files in your browser download them and rename them using the .html extension.
description: Metrics:

Tedi:



Number of concepts: 16

Number of terms: 35


RDF/Protégé:



Axiom: 1,581

Logical axiom count: 692     

Declaration axioms count: 49

Class count: 30

Object property count: 13       

Individual count: 166 

Annotation Property count: 34

Sub class of:  80         

Disjoint Classes: 71

Object Property Domain: 12 

Object Property Range: 12

Class Assertion: 217

Object Property Assertion: 300

Annotation Assertion: 818

Annotation Property Domain: 12       

Annotation Property Range Of: 10
DOI: 10.5281/zenodo.13386671
title: Ontology of Legal Bodies in Classical Athens v.1.0

description: Ontology of legal bodies in Classical Athens 

This is version 1.0 of a dataset created in the context  of a PhD thesis in "Semantic Annotation and Attic Oratory" that defines the primary legal bodies in Classical Athenian courts c. 419 BC to 323 BC. A legal body is defined as "an individual or group who either proceeds over or judges a legal proceeding". This work draws upon the corpus of Attic oratory and the Pseudo-Aristotelian Athenian constitution, as well as The Law of Ancient Athens by David D. Phillips.

This dataset is authored by Rachel Milio (TALOS Ph.D. candidate, Department of Philology, University of Crete), under the supervision of Dr. Maria Papadopoulou (Department of Philology, University of Crete) and Prof. Christophe Roche (TALOS ERA Chair Professor, University of Crete).

Acknowledgement: We gratefully acknowledge the generous funding of the European Commission under the ERA Chair Project TALOS AI for SSH (Grant agreement ID: 101087269).

Contact: Rachel.Milio@outlook.com
description: This version includes:

1. The .otb file. To view it, please import it in  Tedi ontoTerminology Editor

2. The .rdf file. To view it, please import it in Protégé ontology editor

3. The .html file that includes the terms (in English) 

5. The .html file that includes the terms (in Ancient Greek) 

Software:

This dataset was built with Tedi ontoTerminology Editor. Tedi ontoTerminology Editor is a software platform for the creation and management of ontoterminologies. Tedi software platform is distributed by the University of Crete (free for academic use, contact: christophe.roche@uoc.gr).

The .rdf file is queryable via a SPARQL endpoint.

Downloads:

Download the RDF/OWL file; to view the ontology metrics import this file in Protégé (open access ontology editor); to visualize the ontology import this file in VOWL

To view the .html files in your browser download them and rename them using the .html extension.
description: Metrics:

Tedi:



Number of concepts: 16

Number of terms: 35


RDF/Protégé:



Axiom: 1,581

Logical axiom count: 692     

Declaration axioms count: 49

Class count: 30

Object property count: 13       

Individual count: 166 

Annotation Property count: 34

Sub class of:  80         

Disjoint Classes: 71

Object Property Domain: 12 

Object Property Range: 12

Class Assertion: 217

Object Property Assertion: 300

Annotation Assertion: 818

Annotation Property Domain: 12       

Annotation Property Range Of: 10
DOI: 10.15468/dl.8teetu
title: Occurrence Download

description: A dataset containing 36640 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nicandra physalodes (L.) Gaertn.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 36640 records from 443 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110357-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24432/c55887
title: Statlog (Landsat Satellite)
DOI: 10.5281/zenodo.10035107
title: Rock magnetic data from IODP Exp. 382 Sites U1537 and U1538 to support Reilly et al. "A geochemical mechanism for >10 m offsets of magnetic reversals inferred from the comparison of two Scotia Sea drill sites"

description: Rock magnetic data from IODP Exp. 382 Sites U1537 and U1538 to support Reilly et al. "A geochemical mechanism for >10 m offsets of magnetic reversals inferred from the comparison of two Scotia Sea drill sites"
Excel Files:

U1537_CubeSummary_Zenodo.xlsx : Summary of NRM, ARM, IRM, and magnetic susceptibility investigations on U1537 cube samples
U1538_CubeSummary_Zenodo.xlsx : Summary of NRM, ARM, IRM, and magnetic susceptibility investigations on U1538 cube samples
Zip Files:

FORC_Data.zip : First order reversal curve data files in MicroMag format for samples discussed in paper
DCD_Data.zip : DC Demagnetization curve data files for samples discussed in paper
Hysteresis_Data.zip : Hysteresis Loops for samples discussed in paper
MPMS_Data.zip : Data collected on Magnetics Property Measurement System 3, including Field Cooled/Zero Field Cooled Curves, Low Temperature Cycling of Room Temperature IRM, and AC Susceptibility
 
NRM = Natural Remanent Magnetization; ARM = Anhysteretic Remanent Magnetization; IRM = Isothermal Remanent Magnetization
DOI: 10.18150/kgunm5
title: Data for the article entitled: Efficient multiphoton microscopy with picosecond laser pulses

description: The following files include data presented in the manuscript “Efficient multiphoton microscopy with picosecond laser pulses,” written by Katarzyna Kunio, Jakub Bogusławski, and Grzegorz Soboń.Figure 2a – optical spectrum of the picosecond oscillator measured directly at the oscillator output and its spectral phaseFigure 2b – output pulse autocorrelation measured directly at the oscillator output together with Gaussian fit functionFigure 3a_1 – autocorrelation of the picosecond pulse with a Gaussian fit measured at the laser system output (after AOM)Figure 3a_2 – autocorrelation of the picosecond pulse with a Gaussian fit measured at the the microscope’s sample planeFigure 3b – comparison of the reconstructed temporal profile of the femtosecond pulse at the laser system output (after AOM) and in the microscope’s sample plane.Figure 4a – TPE fluorescence images of convallaria majalis sample obtained using femtosecond pulse train (scale bar: 75 µm): 227 fs, 15 MHz, 0.7 mW.Figure 4b – TPE fluorescence images of convallaria majalis sample obtained using picosecond pulse train (scale bar: 75 µm): 10 ps, 0.3 MHz, 0.7 mW.Figure 4c – SHG images of urea microcrystals using femtosecond pulse train (scale bar: 200 µm): 227 fs, 15 MHz, 0.3 mW.Figure 4d – SHG images of urea microcrystals using picosecond pulse train (scale bar: 200 µm): 10 ps, 0.3 MHz, 0.3 mW.Figure 4e – pixel intensity histograms of images shown in Fig. 4a and b (convallaria majalis sample, TPE fluorescence).Figure 4f – pixel intensity histograms of images shown in Fig. 4c and d (urea microcrystals, SHG).Figure 5a – TPE fluorescence images of convallaria majalis sample obtained using femtosecond pulse train (scale bar: 75 µm): 227 fs, 15 MHz, 0.7 mW.Figure 5b – TPE fluorescence images of convallaria majalis sample obtained using picosecond pulse train (scale bar: 75 µm): 10 ps, 1.1 MHz, 0.7 mW.Figure 5c – SHG images of urea microcrystals using femtosecond pulse train (scale bar: 200 µm): 227 fs, 15 MHz, 0.3 mW.Figure 5d – SHG images of urea microcrystals using picosecond pulse train (scale bar: 200 µm): 10 ps, 1.1 MHz, 0.3 mW.Figure 5e – pixel intensity histograms of images shown in Fig. 5a and b (convallaria majalis sample, TPE fluorescence).Figure 5f – pixel intensity histograms of images shown in Fig. 5c and d (urea microcrystals, SHG).
DOI: 10.23729/9a8d90cd-73e2-438d-9230-94e10e61adc9
title: A spectral-structural characterization of European temperate, hemiboreal and boreal forests: Laboratory and field data

description: This dataset contains field and laboratory data on forest canopy structure and spectral properties of canopy elements and forest floor in four study sites located in boreal, hemiboreal, and temperate forests in Finland, Estonia, and the Czech Republic.

The data collection and preprocessing have been described in detail in **Rautiainen et al. (2024). A spectral-structural characterization of European temperate, hemiboreal and boreal forests**.
See a technical README document provided together with the data for details on the contents and formats of the data files.

**Citation:** 
When using the data, please cite
- Rautiainen, M., Hovi, A., Schraik, D., Hanuš, J., Lukeš, P., Lhotáková, Z., & Homolová, L. (2024). A spectral-structural characterization of European temperate, hemiboreal and boreal forests. More information on the article from the authors.
- Hovi, A., Schraik, D., Hanuš, J., Lukeš, P., Lhotáková, Z., Homolová, L., & Rautiainen, M. A spectral-structural characterization of European temperate, hemiboreal and boreal forests: Laboratory and field data. Aalto University. https://doi.org/10.23729/9a8d90cd-73e2-438d-9230-94e10e61adc9

An accompanying dataset, comprising airborne hyperspectral and laser scanning data from the same study sites, is available at [https://doi.org/10.23729/c6da63dd-f527-4ec9-8401-57c14f77d19f](https://doi.org/10.23729/c6da63dd-f527-4ec9-8401-57c14f77d19f).
DOI: 10.26066/rds.1973187
title: Land cover of Afghanistan

description: The annual land cover data of Afghanistan (2000-2018) have been created through the National Land Cover Monitoring System (NLCMS) for Afghanistan. The system uses freely available remote-sensing data (Landsat) and a cloud-based machine learning architecture in the Google Earth Engine (GEE) platform to generate land cover maps on an annual basis using a harmonized and consistent classification system. The NLCMS is developed by International Centre for Integrated Mountain Development (ICIMOD) through SERVIR Hindu Kush Himalaya (SERVIR-HKH), a joint initiative in partnership with the National Aeronautics and Space Administration (NASA) and the United States Agency for International Development (USAID). Collaborators in the development of NLCMS include SERVIR–Mekong at the Asian Disaster Preparedness Center (ADPC), Afghanistan’s Ministry of Agriculture, Irrigation and Livestock (MAIL), SilvaCarbon, Global Land Analysis and Discovery (GLAD) group at the University of Maryland, and the United States Forest Service.
DOI: 10.3886/e111366v1
title: Data and Code for: Maternal Depression, Women's Empowerment, and Parental Investment: Evidence from a Randomized Control Trial

description: We evaluate the medium-term impacts of treating maternal depression on women's mental health, financial empowerment, and parenting decisions. We leverage variation induced by a cluster-randomized control trial that provided psychotherapy to 903 prenatally depressed mothers in rural Pakistan. It was one of the world's largest psychotherapy interventions, and it dramatically reduced postpartum depression. Seven years after psychotherapy concluded, we returned to the study site to find that impacts on women's mental health had persisted, with a 17% reduction in depression rates. The intervention also improved women's financial empowerment and increased both time- and money-intensive parental investments by between 0.2 and 0.3 standard deviations.
description: Response Rates: The starting experimental sample consisted of 463 treated and 440 control mothers. At the 7-year follow-up, we located 295 of the control dyads and 289 of the intervention arm dyads, together corresponding to 64.8% of the baseline sample.A third of the attrition was due to child mortality which was not different by treatment status. The non-experimental group interviewed at the 7-year follow-up consisted of 300 mother-child dyads, 150 from each arm.
description: computer-assisted personal interview (CAPI); computer-assisted self interview (CASI);
description: The Thinking Healthy Program (THP) was a cluster-randomized trial addressing perinatal depression in rural Punjab, Pakistan. <br>The trial was randomized across 40 clusters, these being Union Councils, the smallest geopolitical unit. Twenty clusters were randomizedinto receiving the intervention and twenty to the control arm. Womenwere enrolled during April 2005-March 2006. All women in their thirdtrimester of pregnancy (married, ages 16-45, no other significant illness)who met the DSM-IV criteria for Major Depressive Episode were invitedto participate in the study. A total of 3898 women were identified, with8% refusing before any assessment, and 2% were not found. <br>A total of 3518 women were assessed for clinical depression, with 903(26%) identified as prenatally depressed, a prevalence consistent withprevious estimates for this region (Rahman et al., 2003). There were 463depressed mothers in the clusters randomized to the intervention, and440 in the control arm. Only women diagnosed as depressed completedthe baseline survey. <br>.
description: All women in their third trimester of pregnancy (married, ages 16-45, no other significant illness) who met the DSM-IV criteria for Major Depressive Episode were invited to participate in the study. A total of 3898 women were identified, with 8% refusing before any assessment, and 2% were not found.
DOI: 10.5281/zenodo.3611238
title: PubChemLite tier0 and tier1

description: PubChemLite is a subset of PubChem (https://pubchem.ncbi.nlm.nih.gov/) selected from major categories of the Table of Contents page at the PubChem Classification Browser (https://pubchem.ncbi.nlm.nih.gov/classification/#hid=72). So far we are providing two "flavours": tier0 is 316,810 compounds (14 Jan 2020) compiled from 7 categories: AgroChemInfo, DrugMedicInfo, FoodRelated, PharmacoInfo, SafetyInfo, ToxicityInfo, KnownUse tier1 is 363,911 compounds (14 Jan 2020) compiled from 8 categories (tier0 + BioPathway): AgroChemInfo, BioPathway, DrugMedicInfo, FoodRelated, PharmacoInfo, SafetyInfo, ToxicityInfo, KnownUse PubChemCIDs have been collapsed by InChIKey first block, reporting the structure from the most annotated CID, plus related CIDs. Entries that will be ignored by MetFrag (salts, disconnected substances) or cause errors (e.g. transition metals) have been removed. The Patent and PubMed ID counts are extracted from files on the PubChem FTP site. The "AnnoTypeCount" term counts how many of the categories are represented, the subsequent column (named per category) counts the number of annotation categories available in the next sub-category of the TOC entry. These files can be used "as is" as localCSV for MetFrag Command Line (https://ipb-halle.github.io/MetFrag/) - please do NOT upload these files directly to the web interface, they are too large and will be available in a drop-down menu. Further details are described in Schymanski <em>et al.</em> (2021) DOI:10.1186/s13321-021-00489-0. <strong><em>NOTE: The latest PubChemLite for Exposomics version can be downloaded at DOI:</em></strong><em><strong>10.5281/zenodo.5995885 (currently updating monthly).</strong></em>
DOI: 10.5281/zenodo.8224032
title: Gene models for Populus nigra var italica

description: The current gene model prediction generated as part of the ongoing project P. nigra cv. ‘italica’ reference genome project (ENA: PRJEB44889, short descriptions are available of these annotations files with their available versions) was improved by combining illumina short reads and nanopore isoseq long reads from transcriptome libraries of three replicates using PASA (Program to Assemble Spliced Alignments) (Haas et al., 2003). This tool exploits spliced alignments of expressed transcript sequences to automatically create model gene structures, identifying and classifying all splicing variations supported by the transcript alignments obtained.
DOI: 10.5286/isis.e.rb1920737
title: Can photo-MuSR method measure carrier recombination lifetime in direct gap semiconductors?

description: In the past years we have developed a method measuring carrier recombination lifetime in semiconductors using the photo-MuSR setup in HIFI. These studies have focused on indirect semiconductors, such as Si and Ge, with excess carrier lifetimes longer than 1 microseconds. On the other hand many of the emerging semiconductors have a direct band structure, where injected carriers are funneled into the band minimum and quickly recombined typically in the order of nanoseconds. In this study we aim to apply the photo-MuSR method to these cases utilizing the upgraded DAE in HIFI. Because the experimental approach is different from the previous ones, we put this proposal in as a new submission.
DOI: 10.5525/gla.researchdata.1646
title: Dynamic Mueller matrix polarimetry using generalized measurements
DOI: 10.6084/m9.figshare.22344706
title: Do Automatic Test Generation Tools Generate Flaky Tests?

description: Published at the 46th International Conference on Software Engineering (ICSE 2024). Here you can find a preprint.About the artifacts<b>dataset.csv.gz</b>each row represents one test casecolumn "test_type": was the generated or developer-writtencolumn "flaky": has the test shown flaky behavior, and what kind? (NOD = non-order-dependent, OD = order-dependent)used to answer RQ1 (Prevalence) and RQ2 (Flakiness Suppression).<b>LoC.zip</b>contains lines-of-code data for the Java and Python projects<b>flaky_java_projects.zip</b> and <b>flaky_python_projects.zip</b>archives containing the 418 Java and 531 Python projects that contained at least one flaky testeach project contains the developer written and generated test suites<b>manual_rootCausing.zip</b>results of the manual root cause classificationfull_sample.csvcolumn "rater": which of the four researchers conducting the classification rated this test (alignment = all four)used to answer RQ3 (Root Causes)Running the jupyter notebookDownload all artifactsCreate and activate virtual environment<br><code>virtualenv -p venv</code><br><code>source venv/bin/activate</code>Install dependencies<br><code>pip install -r requirements.txt</code>Start jupyter lab<br><code>python -m jupyter lab</code>Scripts used for test generation and execution<br>Java (EvoSuite)Python (Pynguin)
DOI: 10.6084/m9.figshare.26340535
title: Supplementary Material for: Analysis of Neuropeptides in the Intestinal Mucus of Patients with Ulcerative Colitis Using RNA Sequencing

description: Introduction
Inflammation in ulcerative colitis (UC) originates in the colorectal mucosa. Transcriptome sequencing analysis of the colorectal mucosa allows the identification of potential neuropeptides related to local neurotransmission. The intestinal mucus lining the surface of the mucosa may harbor biomarkers of mucosal inflammation; however, this has not been sufficiently investigated, given the difficulty in obtaining human samples. We previously reported the feasibility of obtaining mucin samples for proteomic analysis by brushing during colonoscopy. Herein, we aimed to investigate the composition of the intestinal mucus and detect neuropeptides characteristic of UC.

Methods
Mucus and mucosal samples were collected from patients with UC from the colorectum in areas showing remission or active UC using a brush catheter and biopsy forceps during colonoscopy. RNA sequencing findings of mucus samples of active and remission areas were compared. RNA and protein expression levels of significantly upregulated neuropeptides were analyzed.

Results
Of the neuropeptides associated with UC, somatostatin (SST) was significantly elevated in areas of remission, according to RNA sequencing results of mucus and expression levels in mucus RNA and proteins. Conversely, SST expression in the mucosa was increased in the inflamed areas. Flow cytometry revealed that the fluorescence intensity of SST-positive cells in the remission zone was higher in the mucus than in the mucosa.

Conclusion
SST expression in the mucus is considered to be an important factor associated with UC activity.
DOI: 10.15784/601125
title: Demographic data for Weddell Seal colonies in Erebus Bay through the 2017 Antarctic field season

description: The Access database contains information for 3 types of data on Weddell seals for the period 1969-2017. (1) Mark-recapture Data with 278,723 resighting records for 25,589 different individuals tagged in and around the McMurdo Sound area, as well as 740 records from 162 seals tagged at White Island; (2) Mass Dynamics Data contains 5,737 physical masses and 1,271 photographic records and measurements that include the date, ID number, sex, age class, weight (if successfully collected), and perspectives from which photographs were collected for each sampling occurrence; and (3) Research Procedures Data contains 1,005 records of handling and research procedures conducted on Erebus Bay Weddell seals by various research teams in recent years.
DOI: 10.5255/ukda-sn-6689-11
title: Annual Survey of Hours and Earnings, 1997-2017: Secure Access
DOI: 10.6084/m9.figshare.25346140
title: Data for Transport and localization of indirect excitons in a van der Waals heterostructure paper

description: Data for Transport and localization of indirect excitons in a van der Waals heterostructure paper