cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.psnhx9
title: Occurrence Download

description: A dataset containing 15705 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phleum phleoides (L.) H.Karst.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 15705 records from 254 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001697-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4r9x7v
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurea nivea (Bornm.) Wagenitz"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092918-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mas0ps
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Sarcocapnos baetica subsp. integrifolia (Boiss.) Nyman"
 ]
}

 The dataset includes 45 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012339-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5yjw8p
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macropanax paucinervis C.B.Shang"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009894-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5uwr8z
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Sphenomorphus neuhaussi (Vogt, 1911)"
 ]
}

 The dataset includes 47 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092924-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d1qnvf
title: Occurrence Download

description: A dataset containing 7172 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Acsmithia Hoogland ex W.C.Dickison, 1976",
 "TaxonKey is Ackama A.Cunn.",
 "TaxonKey is Aistopetalum Schltr.",
 "TaxonKey is Codia J.R.Forst. & G.Forst.",
 "TaxonKey is Cunonia L.",
 "TaxonKey is Davidsonia F.Muell.",
 "TaxonKey is Opocunonia",
 "TaxonKey is Pancheria Brongn. & Gris",
 "TaxonKey is Spiraeanthemum A.Gray",
 "TaxonKey is Spiraeopsis"
 ]
 },
 "HasCoordinate is TRUE",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Literature Occurrence"
 ]
 }
 ]
}

 The dataset includes 7172 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012339-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rvbs8u
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hemiodus immaculatus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 221 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014025-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rpxrh
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025",
 "Geometry POLYGON ((133.7458 39.72669, 133.8061 39.08933, 133.203 38.33259, 139.4557 38.33259, 139.4559 38.39714, 139.5703 38.60001, 139.5703 45.92331, 139.5402 45.88637, 139.3029 45.42136, 139.0132 44.5787, 138.5213 44.18861, 137.9186 43.49589, 137.585 43.18805, 137.0997 42.54491, 136.8041 42.05364, 136.2324 41.25746, 135.9545 40.68811, 135.8615 40.56138, 134.4656 40.05297, 133.7458 39.72669), (139.4503 42.05152, 139.4018 42.17809, 139.4338 42.21593, 139.5621 42.2513, 139.4955 42.08217, 139.4503 42.05152), (139.5432 39.18117, 139.5508 39.2081, 139.5498 39.18205, 139.5432 39.18117), (139.3765 41.52307, 139.3399 41.49511, 139.3367 41.52281, 139.3765 41.52307), (139.2645 38.48874, 139.2146 38.43736, 139.2519 38.48999, 139.2645 38.48874), (138.4847 38.33667, 138.4856 38.33333, 138.4808 38.33389, 138.4847 38.33667))",
 "TaxonKey is Chromista"
 ]
}

 The dataset includes 125 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014026-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fpegcx
title: Occurrence Download

description: A dataset containing 5437 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geranium purpureum",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5437 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014028-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m2umej
title: Occurrence Download

description: A dataset containing 848 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geranium purpureum",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 848 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014027-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/7fy83d
title: NEON Biorepository Aquatic Plant, Bryophyte, Lichen and Macroalgae Collection (Herbarium Vouchers [Standard Sampling])

description: This collections contains identifications of aquatic plant, bryophyte, and macroalgae specimens collected as vouchers during standard sampling. Occurrence records in this collection represent taxonomic identifications of organisms within samples published in the Aquatic Plant, Bryophyte, and Macroalgae Collection (Herbarium Vouchers [Standard Sampling]) (NEON-APLC-HVSS). These samples are archived dry in herbarium voucher packets. See related links below for protocols and NEON related data products.
DOI: 10.15468/q4sztq
title: NEON Biorepository Aquatic Plant, Bryophyte, Lichen, and Macroalgae Collection (Herbarium Vouchers [Point Counts])

description: This collection contains identifications of aquatic plant, bryophyte, and macroalgae specimens collected as vouchers during point counts. Aquatic plant, bryophyte, and lichen point count data are collected three times per year at wadeable streams, during aquatic biology bout windows, roughly in spring, summer, and fall. Data are collected at ten permanent transect locations that are revisited during each sampling bout. Occurrence records in this collection represent identifications of individuals from samples published in Aquatic Plant, Bryophyte, and Macroalgae Collection (Herbarium Vouchers [Point Counts]) (NEON-APLC-HVPC). See related links below for protocols and NEON related data products.
DOI: 10.15468/8a9zee
title: NEON Biorepository Aquatic Macroalgae Collection (Chemical Preservation [Point Counts])

description: This collection contains taxonomic identfiications of subsamples of aquatic macroalgae collected during point counts. Aquatic macroalgae point count data are collected three times per year at wadeable streams only, during aquatic biology bout windows, roughly in spring, summer, and fall. Data are collected at ten permanent transect locations that are revisited during each sampling bout. Occurrence records in this collection represent taxonomic identifications of organisms in samples published in the Aquatic Macroalgae Collection (Chemical Preservation [Point Counts]) (NEON-AMAC-CPPC). Aquatic macroalgae vouchers are preserved in 2% glutaraldehyde and stored in a temperature (17-18&deg;C) and humidity controlled environment. See related links below for protocols and NEON related data products.
DOI: 10.15468/khbw4y
title: NEON Biorepository Aquatic Macroalgae Collection (Chemical Preservation [Clip Harvests])

description: This collection contains taxonomic identifications of subsamples some aquatic macroalgae from clip harvest samples. Aquatic macroalgae clip harvest sampling is conducted once per year at wadeable streams, lakes, and river (during the mid-summer aquatic biology window). During the first and third bouts in rivers and lakes, only presence/absence of vegetation is noted; during the mid-summer bout, samples are collected via quadrats in wadeable streams, and rake collection in lakes and rivers. Ten samples are collected per site if plants are present. In wadeable streams, clip harvest samples are collected near plant transect locations. In lakes and rivers, ten randomly selected points are sampled at depths that are colonized by plants. Occurrence records in this collection represent identifications of individuals within bulk samples in the Aquatic Macroalgae Collection (Chemical Preservation [Clip Harvests]). Vouchers are preserved in 2% glutaraldehyde and stored in a temperature (17-18&deg;C) and humidity controlled environment. See related links below for protocols and NEON related data products.
DOI: 10.15468/z6wwpa
title: NEON Biorepository Aquatic Plant, Bryophyte, Lichen, and Macroalgae Collection (Herbarium Vouchers [Clip Harvests])

description: This collection contains taxonomic identifications for aquatic plant, bryophyte, and macroalgae specimens collected as vouchers during clip harvest sampling. Aquatic plant, bryophyte, and lichen clip harvest sampling is conducted once per year at wadeable streams (during the mid-summer aquatic biology window) and three times per year in rivers and lake sites. During the first and third bouts in rivers and lakes, only presence/absence of vegetation is noted; during the mid-summer bout, samples are collected via quadrats in wadeable streams, and rake collection in lakes and rivers. Ten samples are collected per site if plants are present. In wadeable streams, clip harvest samples are collected near plant transect locations. In lakes and rivers, ten randomly selected points are sampled at depths that are colonized by plants. Occurrence records in this collection represent identified taxa found in samples published in the Aquatic Plant, Bryophyte, and Macroalgae Collection (Herbarium Vouchers [Clip Harvests]) (NEON-APLC-HVCH). See related links below for protocols and NEON related data products.
DOI: 10.15468/dl.gsevt3
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025",
 "Geometry POLYGON ((133.7458 39.72669, 133.8061 39.08933, 133.203 38.33259, 139.4557 38.33259, 139.4559 38.39714, 139.5703 38.60001, 139.5703 45.92331, 139.5402 45.88637, 139.3029 45.42136, 139.0132 44.5787, 138.5213 44.18861, 137.9186 43.49589, 137.585 43.18805, 137.0997 42.54491, 136.8041 42.05364, 136.2324 41.25746, 135.9545 40.68811, 135.8615 40.56138, 134.4656 40.05297, 133.7458 39.72669), (139.4503 42.05152, 139.4018 42.17809, 139.4338 42.21593, 139.5621 42.2513, 139.4955 42.08217, 139.4503 42.05152), (139.5432 39.18117, 139.5508 39.2081, 139.5498 39.18205, 139.5432 39.18117), (139.3765 41.52307, 139.3399 41.49511, 139.3367 41.52281, 139.3765 41.52307), (139.2645 38.48874, 139.2146 38.43736, 139.2519 38.48999, 139.2645 38.48874), (138.4847 38.33667, 138.4856 38.33333, 138.4808 38.33389, 138.4847 38.33667))",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 24 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014031-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93vm6a
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geranium purpureum",
 "Country is Bulgaria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014029-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ys3av
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Takashia nana",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014033-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pnwp64
title: Occurrence Download

description: A dataset containing 244 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stryphnodendron microstachyum",
 "HasCoordinate is true"
 ]
}

 The dataset includes 244 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014034-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ek9yyd
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Elassoma okatie)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014037-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tx3453
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geranium purpureum",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 38 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014038-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ebnjm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025",
 "Geometry POLYGON ((133.7458 39.72669, 133.8061 39.08933, 133.203 38.33259, 139.4557 38.33259, 139.4559 38.39714, 139.5703 38.60001, 139.5703 45.92331, 139.5402 45.88637, 139.3029 45.42136, 139.0132 44.5787, 138.5213 44.18861, 137.9186 43.49589, 137.585 43.18805, 137.0997 42.54491, 136.8041 42.05364, 136.2324 41.25746, 135.9545 40.68811, 135.8615 40.56138, 134.4656 40.05297, 133.7458 39.72669), (139.4503 42.05152, 139.4018 42.17809, 139.4338 42.21593, 139.5621 42.2513, 139.4955 42.08217, 139.4503 42.05152), (139.5432 39.18117, 139.5508 39.2081, 139.5498 39.18205, 139.5432 39.18117), (139.3765 41.52307, 139.3399 41.49511, 139.3367 41.52281, 139.3765 41.52307), (139.2645 38.48874, 139.2146 38.43736, 139.2519 38.48999, 139.2645 38.48874), (138.4847 38.33667, 138.4856 38.33333, 138.4808 38.33389, 138.4847 38.33667))",
 "TaxonKey is Archaea"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014040-250914085247600/datasets/export for details.
DOI: 10.5522/04/30150589
title: Wolframin Degradome Foundation Atlas

description: <b>Wolframin Degradome Foundation Atlas (Version 1):</b><br>This open-access dataset presents Version 3 of the <b>Wolframin Degradome Foundation Atlas</b>, a comprehensive proteolytic peptide resource designed to support translational research in <b>Wolfram Syndrome</b>. This initial version (<i>Wolframin_Degradome_Foundation_Atlas_v1.tar.gz</i>) combines the degradomes for several Wolframin mutations in one single unified dataset with high-level compression, improving usability and download efficiency. These data may prove particularly valuable for clinical researchers developing or analyzing protein aggregation therapeutic strategies, such as therapeutically targetable peptides, antisense oligonucleotides, or for biomarker-based outcome measures in clinical trials.Each peptide entry includes a revised nomenclature that encodes the mutation type and cleavage start/stop positions relative to the full-length Wolframin sequence (e.g., <i>"wolf-a684v-87-170"</i> for a mutant fragment, <i>"wolf-wt-12-160"</i> for wild type). This standardization improves interpretability and facilitates statistical and bioinformatics analyses.The dataset is distributed as a tab-delimited ASCII (.txt) file for straightforward compatibility with statistical and computational pipelines. Due to the expanded data volume and detailed annotation, the file is compressed for efficiency. To extract, use the following command in a bash terminal:<pre><pre>tar -xvJf Wolframin_Degradome_Foundation_Atlas_v3.tar.gz<br></pre></pre><b>Codes</b><br>Dataset generation is fully reproducible using three open-source tools: <b>Python, BLAST, and SAS</b>. Accompanying scripts are included in the repository and are fully documented for transparency. Users are encouraged to adapt file paths and settings to their local environment. These scripts follow the methodology described in [1].<br><b>References</b><br>[1] Petzold A. Proteolysis-Based Biomarker Repertoire of the Neurofilament Proteome. <i>J Neurochem.</i> 2025 Mar;169(3):e70023.<br>doi: 10.1111/jnc.70023. PMID: 40066701; PMCID: PMC11894590.<br><br>
DOI: 10.5522/04/30150589.v1
title: Wolframin Degradome Foundation Atlas

description: <b>Wolframin Degradome Foundation Atlas (Version 1):</b><br>This open-access dataset presents Version 3 of the <b>Wolframin Degradome Foundation Atlas</b>, a comprehensive proteolytic peptide resource designed to support translational research in <b>Wolfram Syndrome</b>. This initial version (<i>Wolframin_Degradome_Foundation_Atlas_v1.tar.gz</i>) combines the degradomes for several Wolframin mutations in one single unified dataset with high-level compression, improving usability and download efficiency. These data may prove particularly valuable for clinical researchers developing or analyzing protein aggregation therapeutic strategies, such as therapeutically targetable peptides, antisense oligonucleotides, or for biomarker-based outcome measures in clinical trials.Each peptide entry includes a revised nomenclature that encodes the mutation type and cleavage start/stop positions relative to the full-length Wolframin sequence (e.g., <i>"wolf-a684v-87-170"</i> for a mutant fragment, <i>"wolf-wt-12-160"</i> for wild type). This standardization improves interpretability and facilitates statistical and bioinformatics analyses.The dataset is distributed as a tab-delimited ASCII (.txt) file for straightforward compatibility with statistical and computational pipelines. Due to the expanded data volume and detailed annotation, the file is compressed for efficiency. To extract, use the following command in a bash terminal:<pre><pre>tar -xvJf Wolframin_Degradome_Foundation_Atlas_v3.tar.gz<br></pre></pre><b>Codes</b><br>Dataset generation is fully reproducible using three open-source tools: <b>Python, BLAST, and SAS</b>. Accompanying scripts are included in the repository and are fully documented for transparency. Users are encouraged to adapt file paths and settings to their local environment. These scripts follow the methodology described in [1].<br><b>References</b><br>[1] Petzold A. Proteolysis-Based Biomarker Repertoire of the Neurofilament Proteome. <i>J Neurochem.</i> 2025 Mar;169(3):e70023.<br>doi: 10.1111/jnc.70023. PMID: 40066701; PMCID: PMC11894590.<br><br>
DOI: 10.15468/dl.he5b78
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geranium purpureum",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 207 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014039-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.