cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8j65p/5
title: Landscape Resistance Surface Raster Files

description: Final landscape resistance surfaces for each study site.
DOI: 10.5061/dryad.9m8ff/1
title: synthetic_04

description: Generated in silico pseudo-observed population (here called synthetic population) using a simulation program written with Python 2.7 (Foundation Python Software, available on: http://wwz.ifremer.fr/clonix/Logiciels/SimulatorClonix). The simulation was conducted among 10000 generations, with meiotic mutation rate of 10-3 and somatic mutation rate of 10-6. Population was of 1000 individuals with c = 0.4. Each population was of 100 loci, 10 alleles possible per loci.
DOI: 10.5061/dryad.9m8ff/2
title: synthetic_09999

description: Generated in silico pseudo-observed population (here called synthetic population) using a simulation program written with Python 2.7 (Foundation Python Software, available on: http://wwz.ifremer.fr/clonix/Logiciels/SimulatorClonix). The simulation was conducted among 10000 generations, with meiotic mutation rate of 10-3 and somatic mutation rate of 10-6. Population was of 10000 individuals with a clonality rate (c) of 0.9999. Each population was of 100 loci, 10 alleles possible per loci.
DOI: 10.5061/dryad.d433j/1
title: Sparrow Genotypes/Haplotypes

description: Genotypes at 24 microsatellite loci and haplotype information at 5 genes for 292 Ammodramus caudacutus and A. nelsoni. Sparrows were sampled from 34 sites along a geographic transect, including allopatric and sympatric populations.
DOI: 10.5061/dryad.ds0kb/1
title: Engesser et al_Dataset
DOI: 10.5061/dryad.g5510/1
title: EpihyteMortalityData
DOI: 10.5061/dryad.h50d9/1
title: StoichFun_SEM_Richness
DOI: 10.5061/dryad.h50d9/2
title: StoichFun_SEM_Evenness
DOI: 10.5061/dryad.h50d9/3
title: Readme_StoichFun
DOI: 10.5061/dryad.hq50s/1
title: Raw expression count by HTSeq

description: Raw expression count data of each library for each Ensembl genes generated by HTSeq. Each column represents a library and each row represents an annotated stickleback gene from Ensembl. Description of the libraries (tissue types, habitat types, sampling locations and sex of the samples) are given in the README.txt file.
DOI: 10.5061/dryad.hq50s/2
title: EdgeR results for head kidney libraries

description: Differential gene expression analysis results for head kidney libraries from EdgeR, including all genes in the analysis. This file contains information on log-fold-changes (logFC) between lake and river ecotypes (positive values indicate higher expression in river and vice versa), log of average count per million reads (logCPM), likelihood ratio (LR), raw p values as well as adjusted p values (FDR).
DOI: 10.5061/dryad.hq50s/3
title: EdgeR results for spleen libraries

description: Differential gene expression analysis results for spleen libraries from EdgeR, including all genes in the analysis. This file contains information on log-fold-changes between lake and river ecotypes (positive values indicate higher expression in river and vice versa), log of average count per million reads (logCPM), likelihood ratio (LR), raw p values as well as adjusted p values (FDR).
DOI: 10.5061/dryad.hq50s/4
title: GO enrichment analyses in head kidney

description: Results of Gene Ontology (GO) enrichment analyses among DE genes in the head kidney.
DOI: 10.5061/dryad.hq50s/5
title: GO enrichment analyses in spleen

description: Results of Gene Ontology (GO) enrichment analyses among DE genes in the spleen.
DOI: 10.5061/dryad.k3v6h/1
title: ELISA data by species from: Fassbinder-Orth et al. 2016. Immunoglobulin detection. Methods in Ecology and Evolution

description: This file contains the ELISA data for 41 different avian species and three different IgY ELISAs
DOI: 10.5061/dryad.mj76c/1
title: Thorax CT patient 001

description: Thorax CT from 17 different patients. Metaheader file format.
DOI: 10.5061/dryad.mj76c/2
title: Thorax CT patient 002

description: Thorax CT from 17 different patients. Metaheader file format.
DOI: 10.5061/dryad.mj76c/3
title: Thorax CT patient 003

description: Thorax CT from 17 different patients. Metaheader file format.
DOI: 10.5061/dryad.mj76c/4
title: Thorax CT patient 004

description: Thorax CT from 17 different patients. Metaheader file format.
DOI: 10.5061/dryad.mj76c/5
title: Thorax CT patient 005

description: Thorax CT from 17 different patients. Metaheader file format.
DOI: 10.5061/dryad.mj76c/7
title: Thorax CT patient 007

description: Thorax CT from 17 different patients. Metaheader file format.
DOI: 10.5061/dryad.qd740/1
title: Blackbuck indirect signs and habitat variables.

description: Collected in the field and processed using Mircosoft Office Excel. Column headings, 'drywt' refers to dry weight of forage, and 'Dist' refers to Distance from Protected Area (PA) boundary (Negative values refer to points inside the PA).
DOI: 10.5061/dryad.qp50f/10
title: Fig 9 P. sulcatum

description: Figure 9.  Piper sulcatum Blume  (A) branch with inflorescences,(B) a portion of female inflorescence, (C) ovary, (D) a portion of male inflorescence, (E) stamen, (F-G) floral bract (top & side views), (H) infructescences (C. Suwanphakdee 53♀ (BK, BKF and KKU) and C. Suwanphakdee 280♂ (BKFand QBG)). — Drawn by L. Loe-Khachon.
DOI: 10.5061/dryad.qp50f/11
title: Fig 10

description: Figure 10. Piper argyrites Ridl. ex C.DC. (A) young leaves, (B) male inflorescence, (C) female inflorescence, (D) floral bract, (E) a portion of male inflorescence, (F) a portion of infructescence, (G) infructescence, Piper baccatum Blume (H) male inflorescence, (I) a portion of male inflorescence, (J) female flower, (K) male flower, (L) infructescence (photo by C. Suwanphakdee).
DOI: 10.5061/dryad.qp50f/12
title: Fig 11

description: Figure 11. Piper leptostachyum Wall. ex Miq. (A) habit, (B) female inflorescence, (C) male inflorescence, (D) a portion of female inflorescence, (E) a portion of male inflorescence, (F) infructescences, (G) fruits, Piper majusculum Blume (H) branch with inflorescence, (I) a portion of infructescence (photo by C. Suwanphakdee).
DOI: 10.5061/dryad.qp50f/13
title: Fig 12

description: Figure 12. Piper quinqueangulatum Miq. (A) habit, (B) male inflorescence, (C) female inflorescence, (D) infructescence, (E) fruits, Piper sulcatum Blume (F) female inflorescence, (G) a portion of female inflorescence, (H) infructescence (photo by C. Suwanphakdee).
DOI: 10.5061/dryad.qp50f/7
title: Fig 6 P. majusculum

description: Figure 6. Piper majusculum Blume (A) branch with an infructescence, (B) female flower, (C-D) floral bract (side & top views) (C. Suwanphakdee  54♀ (BK, BKF and KKU). — Drawn by P. Inthachub.
DOI: 10.5061/dryad.qp50f/8
title: Fig 7 P. peepuloides

description: Figure 7. Piper peepuloides Roxb. (A) branch with an infructescences, (B) floral bract, (C) fruit (P. Srisanga 2249♀ (QBG)).— Drawn by O. Kerdkaew.
DOI: 10.5061/dryad.qp50f/9
title: Fig 8 P. quinqueangulatum

description: Figure 8. Piper quinqueangulatum Miq. (A) branch with infructescences, (B) fruits & female flowers  (C. Niyomdham 5332♀ (BKF and K)).— Drawn by O. Kerdkaew.
DOI: 10.5061/dryad.2q8c2/1
title: Evolutionary Models Script

description: R script containing the code used to run the evolutionary models and test for phylogentic signal
DOI: 10.5061/dryad.2q8c2/2
title: HNalla_RV_454_Raw_20120507_1525_1_2

description: Raw (unfiltered) 454 sequence data for Primer Pair 1. Demultiplexed using the software jMHC (2011).
DOI: 10.5061/dryad.33h50.2
title: Data from: Unexpected cryptic species diversity in the widespread coral Seriatopora hystrix masks spatial-genetic patterns of connectivity
DOI: 10.5061/dryad.33h50.2/10.2
title: Structure parameters_Seriatopora spp. GBR

description: The parameters used for hierarchical structure analyses: project parameters, correlated allele frequency model parameters, independent allele frequency model parameters.
DOI: 10.5061/dryad.33h50.2/3.2
title: Genotypes_Seriatopora spp. GBR

description: Genotype data for all 965 individuals at 10 loci
DOI: 10.5061/dryad.33h50.2/4.2
title: Population Allele Frequencies_ Seriatopora spp. GBR

description: The input population allele frequencies used to calculate Da distance for 30 populations examined in the study.
DOI: 10.5061/dryad.33h50.2/5.2
title: Da Distance Matrix_Seriatopora spp. GBR

description: Input file of Da Distance used to calculate NJ trees.
DOI: 10.5061/dryad.33h50.2/6.2
title: Pairwise Population G"st Matrix_Seriatopora spp. GBR

description: Matrix of pairwise population G"st estimates.
DOI: 10.5061/dryad.33h50.2/7.2
title: Pairwise Population Fst Matrix_Seriatopora spp. GBR

description: Matrix of pairwise population Fst estimates.
DOI: 10.5061/dryad.33h50.2/8.2
title: Pairwise Population Geographic Distance Matrix_Seriatopora spp. GBR

description: Matrix of pairwise geographic distances among populations, Ln(d+1)
DOI: 10.5061/dryad.33h50.2/9.2
title: Structure input_Seriatopora spp. GBR

description: Input file used for hierarchical structure analyses.
DOI: 10.5061/dryad.4j7ss/1
title: Dataset
DOI: 10.5061/dryad.4vp41/1
title: Data.Crossfostering

description: Data for TL and SMI for cross-fostering nestling at day 15
DOI: 10.5061/dryad.521ng/1
title: Mule Deer and White-tailed Deer GPS Collar Locations

description: Mule deer and white-tailed deer were captured and fit with GPS-collars within East-Central Alberta. The collars recorded the location of the deer every two hours. These sequential locations were used to construct a step selection function (SSF) model to quantify the habitat selection of deer movements.
DOI: 10.5061/dryad.521ng/2
title: Step Selection Function Regression Data

description: The SSF regression data was used to build a Step Selection Function (SSF) model for mule deer and white-tailed deer (two separate models). We used conditional logistic regression to do so. Each line in the database corresponds to a spatial line segment connecting two consecutive GPS-collar locations (aka "step").
DOI: 10.5061/dryad.521ng/3
title: CWD Risk Model Regression Data

description: The data set used to build the chronic wasting disease (CWD) risk model. The basis for the data set are mule deer and white-tailed deerharvested by hunters or government sharp-shooters in East-Central Alberta and West-Central Saskatchewan. These deer were tested for CWD. Landscape covariates describe the features surrounding each deer harvested with covariates corresponding to features previously shown to be important for CWD risk and/or deer habitat selection.
DOI: 10.5061/dryad.521ng/4
title: CWD Surveillance Data from 2000 to 2010

description: This chronic wasting disease (CWD) surveillance data is the basis for the construction of the CWD risk model. Mule deer and white-taileddeer were harvested by hunters and government sharp-shooters in East-Central Alberta and West-Central Saskatchewan from 2000 to 2010. Deer heads were submitted to a laboratory for testing for the presence of CWD.
DOI: 10.5061/dryad.66ft5.1
title: Data from: Can the Fisher-Lande process account for birds-of-paradise and other sexual radiations?
DOI: 10.5061/dryad.66ft5.2/3.2
title: topo7

description: OUwie tree file
DOI: 10.5061/dryad.66ft5.2/4.2
title: R script for fig 4D

description: This R program runs a stochastic simulation of the FLP in 100 populations for 500 generations and then plots results at generation 500 (fig. 4D).  See Appendix A for the equations used in this program. See Table 2 for parameter values used in this and other figures.
DOI: 10.5061/dryad.7fg32/3
title: ensembler_dataset-models-EPHA3-ERBB4
DOI: 10.5061/dryad.7fg32/4
title: ensembler_dataset-models-FAK1-INSRR
DOI: 10.5061/dryad.7fg32/5
title: ensembler_dataset-models-INSR-LMTK3
DOI: 10.5061/dryad.7fg32/6
title: ensembler_dataset-models-LTK-RON
DOI: 10.5061/dryad.7fg32/7
title: ensembler_dataset-models-ROR1-TYRO3
DOI: 10.5061/dryad.7fg32/8
title: ensembler_dataset-models-UFO-ZAP70
DOI: 10.5061/dryad.7tv80/1
title: Weather station records

description: Raw GHCN weather station records (1981-2010) for stations used in the paper.
DOI: 10.5061/dryad.7tv80/2
title: Independent weather station analysis

description: Data for follow-up analysis of gridded weather products with an independent set of weather stations.
DOI: 10.5061/dryad.7tv80/3
title: CPC Gridded

description: Data for primary analysis, both gridded data and the corresponding observed data
DOI: 10.5061/dryad.7tv80/4
title: DAYMET_Gridded

description: Data for primary analysis, both gridded data and the corresponding observed data
DOI: 10.5061/dryad.7tv80/5
title: LIVNEH_Gridded

description: Data for primary analysis, both gridded data and the corresponding observed data
DOI: 10.5061/dryad.7tv80/6
title: MAURER_Gridded

description: Data for primary analysis, both gridded data and the corresponding observed data
DOI: 10.5061/dryad.90r60/1
title: Wood et al.PRSB2016_Supporting data

description: Raw data
DOI: 10.5061/dryad.bb502/1
title: NeedforSpeed_RSOS_Wilkie_DataUpload

description: Steering bias (metres) where positive indicates oversteering and negative understeering,  Data is shown for 19 participants (rows) under various visual conditions as labelled(columns).
DOI: 10.5061/dryad.f8rm5/1
title: Schartel and Schauber_Raw Data

description: This zipped data file contains all raw data pertaining to this manuscript. Folders containing data on small mammal trapping, monitoring of predator space use/activity, and predator consumption of incidental prey items are included.
DOI: 10.5061/dryad.f8rm5/2
title: Almond consumption

description: This file contains data on almond consumption by small mammals on 6 plots over the course of 3 experimental periods.
DOI: 10.5061/dryad.f8rm5/3
title: Maple seed consumption

description: This file contains data on maple seed consumption by small mammals on 6 plots over the course of 3 experimental periods.
DOI: 10.5061/dryad.f8rm5/4
title: Track plate activity

description: This file contains data on small mammal activity, as measured by track plates, on 6 plots over the course of 3 experimental periods.
DOI: 10.5061/dryad.f8rm5/5
title: Trapping efforts

description: This file contains data on trapping efforts on 6 plots for two trapping periods; one pre-experiment, the other post-experiment.
DOI: 10.5061/dryad.j5d4c/1
title: Tschumi_et_al_2016_JApplEcol_Data
DOI: 10.5061/dryad.mj76c/10
title: Thorax CT patient 009

description: Thorax CT from 17 different patients. Metaheader file format.
DOI: 10.5061/dryad.mj76c/11
title: Thorax CT patient 010

description: Thorax CT from 17 different patients. Metaheader file format.
DOI: 10.5061/dryad.mj76c/12
title: Thorax CT patient 011

description: Thorax CT from 17 different patients. Metaheader file format.
DOI: 10.5061/dryad.mj76c/13
title: Thorax CT patient 012

description: Thorax CT from 17 different patients. Metaheader file format.
DOI: 10.5061/dryad.mj76c/14
title: Thorax CT patient 013

description: Thorax CT from 17 different patients. Metaheader file format.
DOI: 10.5061/dryad.mj76c/15
title: Thorax CT patient 014

description: Thorax CT from 17 different patients. Metaheader file format.
DOI: 10.5061/dryad.mj76c/16
title: Thorax CT patient 015

description: Thorax CT from 17 different patients. Metaheader file format.
DOI: 10.5061/dryad.mj76c/6
title: Thorax CT patient 006

description: Thorax CT from 17 different patients. Metaheader file format.
DOI: 10.5061/dryad.mj76c/8
title: Thorax CT patient 008

description: Thorax CT from 17 different patients. Metaheader file format.
DOI: 10.5061/dryad.mj76c/9
title: Thorax CT patient 009

description: Thorax CT from 17 different patients. Metaheader file format.
DOI: 10.5061/dryad.nf981/1
title: Hollowell_S1

description: Table of all isolates included in analyses and associated accession numbers.
DOI: 10.5061/dryad.nf981/2
title: Hollowell_S2-S9

description: Supplementary Files S2-S9
DOI: 10.5061/dryad.nf981/3
title: Hollowell S10 Carbon Utulization Assays

description: Phenotypic Array data for Carbon Utilization
DOI: 10.5061/dryad.s08t2/1
title: TableS1_crops_regions_table

description: Table S1. Crop commodities assessed in food supplies and agricultural production systems analyses and their primary regions of diversity. Taxonomy follows GRIN (2015) [25].
DOI: 10.5061/dryad.s08t2/2
title: TableS2_countries_regions_table

description: Table S2. Countries assessed in food supplies and agricultural production systems analyses and their associated regions.
DOI: 10.5061/dryad.s08t2/3
title: TableS3_regionalcomposition_tocountries

description: Table S3. Importance of primary regions of diversity of agricultural crops in contribution to national food supplies [as measured in contribution of crops to calories (kcal/capita/day), protein (g/capita/day), fat (g/capita/day), and food weight (g/capita/day)] and national agricultural production [production quantity (tonnes), harvested area (ha), and production value (million US$)], averaged over years 2009-2011. Importance was estimated by grouping the contribution of consumed/produced crops by their primary regions of diversity. As some crops pertain to more than one primary region of diversity, total values across all primary regions per country is not equivalent to total per capita food supply/ total agricultural production values per country. Percentages provide a comparison of the relative importance of primary regions in contribution to the food supply/national production of each country.
DOI: 10.5061/dryad.t2m46.1
title: Data from: Photosynthetic pathways in Bromeliaceae: phylogenetic and ecological significance of CAM and C3 based on carbon isotope ratios for 1893 species
DOI: 10.5061/dryad.t2m46.2
title: Data from: Photosynthetic pathways in Bromeliaceae: phylogenetic and ecological significance of CAM and C3 based on carbon isotope ratios for 1893 species
DOI: 10.5061/dryad.t2m46.2/1.2
title: Table 1 xls for DRYAD

description: Carbon isotope ratios for 2124 samples of Bromeliaceae (including 15 previously published values) representing 1893 species, with taxonomic authority, information on source of material and ecology of the species.
DOI: 10.5061/dryad.14955/1
title: Chronic pain and depression

description: DSM-IV majordepression diagnosis related to a two factor model of Beck depression inventory. Factors are Negative view of self and Physical function. Additional variables; Current pain intensity (Visual Analogue Scale) and Pain Disability
DOI: 10.5061/dryad.2q8c2/10
title: All Spp Final Aligned Variants

description: Alignment of all 536 alleles identified. Alignment performed manually using BioEdit V.7.2.5 Sequence Alignment Editor (Hall 1999). In FASTA format.
DOI: 10.5061/dryad.2q8c2/11
title: Key to final allele names

description: This file provides a key to the allele names that links the names they have been allocated in the manuscript to the original names of the raw sequences (these numbers match the sequence numbers in the raw sequence files provided). "Species" denotes the species in which the allele was found. "Old Seq Name" refers to the names in the raw sequence files (sequence number). "New Name" refers to the allele name used in the manuscript. "Seq" is the aligned sequence. The alleles which were detected by more than one primer pair are identifiable as their "Old Seq Name" is comprised of more than one sequence number adjoined by a colon.
DOI: 10.5061/dryad.2q8c2/12
title: All Final Variants

description: All variants found (unaligned) in FASTA format.
DOI: 10.5061/dryad.2q8c2/3
title: Short_RV_454_Raw_20120507_1115_1_2

description: Raw (unfiltered) 454 sequence data for Primer Pair 3. Demultiplexed using the software jMHC (2011).
DOI: 10.5061/dryad.2q8c2/4
title: HNalla46_Raw_Data_20151119_1740_1

description: Raw (unfiltered) 454 sequence data for Primer Pair 2. Demultiplexed using the software jMHC (2011).
DOI: 10.5061/dryad.2q8c2/7
title: Phylogenetic tree of species

description: Maximum clade credibility tree summarising the phylogenetic relationships between the bird species studied (rooted using Gallus gallus).
DOI: 10.5061/dryad.2q8c2/9
title: Samples Info

description: Details of of the samples included in the study. The column "Sample Name" specifies the unique name of each sample. The column "Species" indicates which species each sample is from. The column "Location" provides information on the location the sample was collected at.
DOI: 10.5061/dryad.33h50.1
title: Data from: Unexpected cryptic species diversity in the widespread coral Seriatopora hystrix masks spatial-genetic patterns of connectivity
DOI: 10.5061/dryad.33h50.2/11.2
title: Medium length mtDNA haplotype alignment_Seriatopora spp.

description: Alignment of mtDNA haplotypes used in the medium length alignment (~811bp)
DOI: 10.5061/dryad.33h50.2/12.2
title: Short length mtDNA haplotype alignment_Seriatopora spp.

description: Alignment of mtDNA haplotypes used at shortest length (629bp)
DOI: 10.5061/dryad.33h50.2/13.2
title: Long length mtDNA haplotype alignment_Seriatopora spp.

description: MtDNA haplotype alignment of longest length sequences: 1388bp
DOI: 10.5061/dryad.33h50.2/14.2
title: W. Lizard mtDNA sequence alignment_Seriatopora spp. GBR

description: Alignment of full sequences of all 39 individuals sequenced from the W. Lizard site in this study.
DOI: 10.5061/dryad.33h50.2/15.2
title: Master Worksheet of All Data 2re _Seriatopora spp. GBR

description: This Excel file is a worksheet containing tabs for each csv file uploaded to Dryad: master summary table of all individuals, genotypes, allele frequencies for calculation of Da distance for NJ tree, Da distance matrix, matrix of pairwise population G"st, matrix of pairwise population Fst, matrix of pairwise population geographic distances, structure input, structure parameters, medium length haplotype alignment, short length haplotype alignment, long length haplotype alignment, alignment of full sequences from individuals from W Lizard.
DOI: 10.5061/dryad.33h50.2/16.2
title: Master Summary Table 2re_Seriatopora spp. GBR

description: This is a summary table of each individual used in the study, including the following data: sample name, designated species according to publication, population, mtDNA amplicon size, Symbiodinium ITS2 sequence, Lat/ Long, Habitat, Geographic Region, and Genbank Accession numbers.
DOI: 10.5061/dryad.375dk/1
title: Havill_et_al. _2016_usat_data_dryad

description: An excel file with sample information and 14-locus microsatellite genotypes for hemlock adelgids used in this study.
DOI: 10.5061/dryad.521ng/5
title: CWD Surveillance Data in Alberta from 2011 to 2013 for validation

description: This data was used for validating/evaluating the CWD risk model predictions. Mule deer and white-taileddeer were harvested by hunters in East-Central Alberta from 2000 to 2010. Deer heads were submitted to a laboratory for testing for the presence of CWD.
DOI: 10.5061/dryad.6n018/1
title: Publication and Reporting-Compiled Data Tables

description: Compiled data tables for each institution including data from the manual review for publications along with results reporting data and trial characteristics from ClinicalTrials.gov
DOI: 10.5061/dryad.75tn6/1
title: Long Term Outcomes in Pediatric Kaposi Sarcoma

description: ReadMe file included as an additional sheet in the Excel file.
DOI: 10.5061/dryad.7rs2d/1
title: R scripts to test the effect of river networks on population genetic structure

description: Spatial explicit forward-time agent-based model scripts in R to simulate multi-locus genotypes for all individuals from every local population based on informed river shapes. For any questions please contact the paper's authors.
DOI: 10.5061/dryad.7t06c/1
title: Campylobacter_jejuni_n50
DOI: 10.5061/dryad.7t06c/2
title: Clostridium_difficile_n50
DOI: 10.5061/dryad.7t06c/3
title: Escherichia_coli_n50
DOI: 10.5061/dryad.7t06c/4
title: Haemophilus_influenzae_n50
DOI: 10.5061/dryad.7t06c/5
title: Neisseria_gonorrhoeae_n50
DOI: 10.5061/dryad.7t06c/6
title: Neisseria_meningitidis_n50
DOI: 10.5061/dryad.7t06c/7
title: Salmonella_enterica_n50
DOI: 10.5061/dryad.7t06c/8
title: Staphylococcus_aureus_n50
DOI: 10.5061/dryad.7tv80/10
title: UIDAHO_Gridded

description: Data for primary analysis, both gridded data and the corresponding observed data