cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2tm7d5
title: Occurrence Download

description: A dataset containing 181 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chrysopogon sylvaticus C.E.Hubb."
 ]
}

 The dataset includes 181 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137575-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4tqol
title: Occurrence Download

description: A dataset containing 1778 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "DecimalLatitude is greater than 31.2497245056788",
 "DecimalLatitude is less than 31.7419825069498",
 "DecimalLongitude is greater than -111.237257539046",
 "DecimalLongitude is less than -110.71611628567"
 ]
}

 The dataset includes 1778 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004409-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5pgpe0
title: Occurrence Download

description: A dataset containing 2804005 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year is 2006",
 "Month is May",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 2804005 records from 2064 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035615-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.16621069
title: Additional file 4 of Genome-wide association study reveals the genetic architecture of root hair length in maize

description: Additional files 4: Supplemental Table 2. Pathways associated with increased root hair length at statistical significance P &lt; 0.05.
DOI: 10.6084/m9.figshare.16621072
title: Additional file 5 of Genome-wide association study reveals the genetic architecture of root hair length in maize

description: Additional files 5: Supplemental Table 3. Pathways associated with decreased hair length at statistical significance P &lt; 0.05.
DOI: 10.6084/m9.figshare.16621066.v1
title: Additional file 3 of Genome-wide association study reveals the genetic architecture of root hair length in maize

description: Additional files 3: Table S1. Root hair length ratio (Inbreds/B73) of the 281 inbred lines from different subpopulations.
DOI: 10.24381/cds.8e0e4724
title: Global monthly and daily high-spatial resolution of total column water vapour from 2002 to 2017 derived from satellite observations
DOI: 10.6084/m9.figshare.25019060
title: HHU_QTP_Endorheic_Delineation_Classification_Dataset

description: This dataset provides a detailed delineation and classification of endorheic basins on the Qinghai-Tibet Plateau, which would be beneficial for ecological analysis. It includes tables (.xls, .xlsx, .csv, .txt) and shapefiles (.shp).
DOI: 10.6084/m9.figshare.8241878
title: Variant maps for bat echolocation call identification algorithms

description: Automated ultrasonic recordings are widely used in basic and applied research to detect the presence of bats. Often, algorithms for the automated identification of species are based on a pre-processing of acoustic information that involves the generation of spectrograms. Even though this approach is technically advanced, recent surveys highlight substantially high failure rates to identify species correctly, which urges for improved processes. Here, we tested an entirely new method, in particular, the transformation of ultrasonic recordings into variant maps. To compare this method with a spectrogram-based method, we used a database consisting of 160 echolocation calls from eight European bat species, including species of the genus <i>Myotis</i> that are inherently difficult to separate based on echolocation calls. For non-<i>Myotis</i> species, both methods led to a 100% correct identification rate, while for <i>Myotis</i> species the use of variant maps led to a lower identification rate of 85.3% compared to 91.1% that was achieved with a spectrogram-based method. However, a combination of both methods could lead to an identification rate of 94.1% for <i>Myotis</i> species. This result suggests combining our approach with spectrogram-based techniques to improve the automated identification of species based on acoustic information.
DOI: 10.6084/m9.figshare.8241878.v1
title: Variant maps for bat echolocation call identification algorithms

description: Automated ultrasonic recordings are widely used in basic and applied research to detect the presence of bats. Often, algorithms for the automated identification of species are based on a pre-processing of acoustic information that involves the generation of spectrograms. Even though this approach is technically advanced, recent surveys highlight substantially high failure rates to identify species correctly, which urges for improved processes. Here, we tested an entirely new method, in particular, the transformation of ultrasonic recordings into variant maps. To compare this method with a spectrogram-based method, we used a database consisting of 160 echolocation calls from eight European bat species, including species of the genus <i>Myotis</i> that are inherently difficult to separate based on echolocation calls. For non-<i>Myotis</i> species, both methods led to a 100% correct identification rate, while for <i>Myotis</i> species the use of variant maps led to a lower identification rate of 85.3% compared to 91.1% that was achieved with a spectrogram-based method. However, a combination of both methods could lead to an identification rate of 94.1% for <i>Myotis</i> species. This result suggests combining our approach with spectrogram-based techniques to improve the automated identification of species based on acoustic information.
DOI: 10.6084/m9.figshare.22914683
title: Additional file 3 of Targeting NRF2 uncovered an intrinsic susceptibility of acute myeloid leukemia cells to ferroptosis

description: Supplementary Material 3. The information of 70 candidate genes.
DOI: 10.6084/m9.figshare.22914686
title: Additional file 4 of Targeting NRF2 uncovered an intrinsic susceptibility of acute myeloid leukemia cells to ferroptosis

description: Supplementary Material 4. The top 20 KEGG enrichments of the 70 candidate genes.
DOI: 10.6084/m9.figshare.20291124
title: Additional file 1 of Light/dark phase influences intra-individual plasticity in maintenance metabolic rate and exploratory behavior independently in the Asiatic toad

description: Additional file 1.
DOI: 10.6084/m9.figshare.20291124.v1
title: Additional file 1 of Light/dark phase influences intra-individual plasticity in maintenance metabolic rate and exploratory behavior independently in the Asiatic toad

description: Additional file 1.
DOI: 10.6084/m9.figshare.24494911
title: Extracorporeal membrane oxygenation for COVID-19 and influenza associated acute respiratory distress syndrome: a systematic review

description: Extracorporeal membrane oxygenation (ECMO) has been used extensively for H1N1 influenza and coronavirus disease 2019 (COVID-19)-related acute respiratory distress syndrome (ARDS) to improve gas exchange and quickly correct hypoxemia and hypercapnia. This systematic review summarized the evidence on ECMO for the treatment of COVID-19 and influenza-associated ARDS. This is a systematic review and meta-analysis of studies to compare the efficacy and safety of ECMO with conventional mechanical ventilation in adults with COVID-19 and influenza-associated ARDS. The study performed a structured search on PubMed, Embase, Web of Science, Scopus and The Cochrane Library. The primary outcome was hospital mortality. The study included 15 observational studies with 5239 patients with COVID-19 and influenza-associated ARDS. The use of ECMO significantly reduced in-hospital mortality in COVID-19-associated ARDS (OR = 0.40; 95% CI = 0.27–0.58; <i>P</i> &lt; 0.00001) but did not reduce influenza-related mortality (OR = 1.08; 95% CI = 0.41–2.87; <i>P</i> = 0.87). Moreover, ECMO treatment meaningfully increased the incidence of bleeding complications (OR = 7.66; 95% CI = 2.47–23.72; <i>P</i> = 0.0004). The use of ECMO significantly reduced in-hospital mortality in COVID-19- associated ARDS, which may be related to the advances in ECMO-related techniques and the increased experience of clinicians. However, the incidence of bleeding complications remains high.
DOI: 10.6084/m9.figshare.24494911.v1
title: Extracorporeal membrane oxygenation for COVID-19 and influenza associated acute respiratory distress syndrome: a systematic review

description: Extracorporeal membrane oxygenation (ECMO) has been used extensively for H1N1 influenza and coronavirus disease 2019 (COVID-19)-related acute respiratory distress syndrome (ARDS) to improve gas exchange and quickly correct hypoxemia and hypercapnia. This systematic review summarized the evidence on ECMO for the treatment of COVID-19 and influenza-associated ARDS. This is a systematic review and meta-analysis of studies to compare the efficacy and safety of ECMO with conventional mechanical ventilation in adults with COVID-19 and influenza-associated ARDS. The study performed a structured search on PubMed, Embase, Web of Science, Scopus and The Cochrane Library. The primary outcome was hospital mortality. The study included 15 observational studies with 5239 patients with COVID-19 and influenza-associated ARDS. The use of ECMO significantly reduced in-hospital mortality in COVID-19-associated ARDS (OR = 0.40; 95% CI = 0.27–0.58; <i>P</i> &lt; 0.00001) but did not reduce influenza-related mortality (OR = 1.08; 95% CI = 0.41–2.87; <i>P</i> = 0.87). Moreover, ECMO treatment meaningfully increased the incidence of bleeding complications (OR = 7.66; 95% CI = 2.47–23.72; <i>P</i> = 0.0004). The use of ECMO significantly reduced in-hospital mortality in COVID-19- associated ARDS, which may be related to the advances in ECMO-related techniques and the increased experience of clinicians. However, the incidence of bleeding complications remains high.
DOI: 10.6084/m9.figshare.25250659.v1
title: Data and R codes for Zhang <i>et al.</i> <b>Temporal dynamic of Grime’s CSR strategies in plant communities during 60 years of succession</b>

description: Data and R codes for Zhang <i>et al.</i> <b>Temporal dynamic of Grime’s CSR strategies in plant communities during 60 years of succession</b>
DOI: 10.6084/m9.figshare.7193504
title: Additional file 7: of Transcriptome analysis reveals the molecular mechanisms of the defense response to gray leaf spot disease in maize

description: Up-regulated and down-regulated wall-associated kinases in ‘Yayu889’ and ‘Zhenghong532’ at 89, 91, and 93 days post planting, respectively. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.11904876
title: Bionano optical maps of Twelve Platinum-Standard Reference Genomes Sequence

description: The Bionano optical maps of Twelve PSRefSeqs were used to validate the genome assemblies. All the maps stats were described in the paper.
DOI: 10.6084/m9.figshare.11904876.v1
title: Bionano optical maps of Twelve Platinum-Standard Reference Genomes Sequence

description: The Bionano optical maps of Twelve PSRefSeqs were used to validate the genome assemblies. All the maps stats were described in the paper.
DOI: 10.6084/m9.figshare.7193612.v1
title: Additional file 2: of The gut bacteria across life stages in the synanthropic fly Chrysomya megacephala

description: Table S2. OTU taxonomy of all samples. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.7193639
title: Additional file 4: of The gut bacteria across life stages in the synanthropic fly Chrysomya megacephala

description: Table S3. Numbers OTU that belong to core genera. (XLSX 9 kb)
DOI: 10.5281/zenodo.10683821
title: Dataset for "ZnO decorated Graphene-based NFC tag for personal NO2 exposure monitoring during a workday"

description: Dataset with all measurements performed and related to the publication "ZnO decorated Graphene-based NFC tag for personal NO2 exposuremonitoring during a workday" Published in Sensors MDPI 2024 by A. Santos and co-workers.
DOI: 10.5281/zenodo.10683822
title: Dataset for "ZnO decorated Graphene-based NFC tag for personal NO2 exposure monitoring during a workday"

description: Dataset with all measurements performed and related to the publication "ZnO decorated Graphene-based NFC tag for personal NO2 exposuremonitoring during a workday" Published in Sensors MDPI 2024 by A. Santos and co-workers.
DOI: 10.6084/m9.figshare.14526227.v1
title: Additional file 5 of Basic leucine zipper (bZIP) transcription factor genes and their responses to drought stress in ginseng, Panax ginseng C.A. Meyer

description: Table S4. The published bZIP genes of Arabidopsis, rice and tomato used as outgroups for phylogenetic analysis of the PgbZIP gene family.
DOI: 10.5281/zenodo.10683311
title: Microclimate simulation of Hochschule Offenburg using PALM

description: This the dataset for the microclimate simulation of Hochschule Offenburg using PALM. The data is divided into three parts 1) INPUT 2) MONITORING 3) OUTPUT

The files campus_24_v1_p3d is called a Namelist file and campus_24_v1_static is called static driver. Both these files belong to the INPUT data

All the files ending with .nc are OUTPUT files. 

All the other files are considered as monitoring files which show the cpu usage and other useful metrics of the simulation.
DOI: 10.5281/zenodo.10683312
title: Microclimate simulation of Hochschule Offenburg using PALM

description: This the dataset for the microclimate simulation of Hochschule Offenburg using PALM. The data is divided into three parts 1) INPUT 2) MONITORING 3) OUTPUT

The files campus_24_v1_p3d is called a Namelist file and campus_24_v1_static is called static driver. Both these files belong to the INPUT data

All the files ending with .nc are OUTPUT files. 

All the other files are considered as monitoring files which show the cpu usage and other useful metrics of the simulation.
DOI: 10.5281/zenodo.10636354
title: Environmental response to recent changes in the extratropical circulation

description: Raw data from fieldwork on Grey Glacier and Schiaparelli Glacier. Note that additional data from Schiaparelli Glacier and Python scripts for post-processing are available in a separate repository:  https://doi.org/10.5281/zenodo.7962016

This repository contains data from the Automatic Weather Station (AWS), raw and post-processed data from the time-lapse camera system on Grey Glacier, and isotopic composition of water samples. For more details please see the ReadMe.md. The data are presented and discussed in the PhD thesis "Environmental response to recent changes in the extratropical circulation" by Langhamer (2024). They are available to the public under a CC BY 4.0 licence.

If you are using this dataset, please refer to the dissertation in addition to this Zenodo repository: Langhamer, L. (2024):  Environmental response to recent changes in the extratropical circulation. PhD thesis. Humboldt-Universität zu Berlin, Mathematisch-Naturwissenschaftliche Fakultät. 

Acknowledgements: The authors acknowledge Dörthe Tetzlaff and David Dubbert of the Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin, Germany for carrying out the water isotope analyses. We also thank Franziska Temme, Jorge Arigony-Neto, Inti Gonzalez, Marcelo Arevalo, Gino Casassa and Ricardo Jaña for their logistical support and contributions during the extensive fieldwork.
DOI: 10.5281/zenodo.10636355
title: Environmental response to recent changes in the extratropical circulation

description: Raw data from fieldwork on Grey Glacier and Schiaparelli Glacier. Note that additional data from Schiaparelli Glacier and Python scripts for post-processing are available in a separate repository:  https://doi.org/10.5281/zenodo.7962016

This repository contains data from the Automatic Weather Station (AWS), raw and post-processed data from the time-lapse camera system on Grey Glacier, and isotopic composition of water samples. For more details please see the ReadMe.md. The data are presented and discussed in the PhD thesis "Environmental response to recent changes in the extratropical circulation" by Langhamer (2024). They are available to the public under a CC BY 4.0 licence.

If you are using this dataset, please refer to the dissertation in addition to this Zenodo repository: Langhamer, L. (2024):  Environmental response to recent changes in the extratropical circulation. PhD thesis. Humboldt-Universität zu Berlin, Mathematisch-Naturwissenschaftliche Fakultät. 

Acknowledgements: The authors acknowledge Dörthe Tetzlaff and David Dubbert of the Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin, Germany for carrying out the water isotope analyses. We also thank Franziska Temme, Jorge Arigony-Neto, Inti Gonzalez, Marcelo Arevalo, Gino Casassa and Ricardo Jaña for their logistical support and contributions during the extensive fieldwork.
DOI: 10.6084/m9.figshare.20291141.v1
title: Additional file 1 of LINC00893 inhibits the progression of prostate cancer through miR-3173-5p/SOCS3/JAK2/STAT3 pathway

description: Additional file 1. Western blot grayscale raw data.
DOI: 10.6084/m9.figshare.15050633.v1
title: Quality of wheat lines solely expressing high-molecular-weight glutenin allelic variation of 1Dy 12

description: The high-molecular-weight glutenin subunits (HMW-GS) at <i>Glu-D1</i> have a larger contribution to the processing property of wheat flours than those at the <i>Glu-A1</i> and <i>Glu-B1</i> loci and are always expressed in nature. Wheat lines missing one subunit at <i>Glu-D1</i>, either x or y, attract great interest for their potential quality value. Major quality parameters including SDS<i>-</i>sedimentation value, gluten-related indices, and other dough strength parameters such as development time, stability time, degree of softening, and farinograph quality numbers were tested in wheat lines solely expressing HMW-GS 1Dy12 from different backgrounds and compared with a weak gluten wheat control CN 16 to elucidate their quality potential. Wheat line solely expressing HMW-GS 1Dy12 derived from different genetic backgrounds showed similar but low SDS-sedimentation values (∼10 mL) and low wet gluten (∼20–25 g) and dry gluten contents (∼10 g). Additionally, wheat line solely expressing HMW-GS 1Dy 12 also showed a lower development time (&lt;1 min), stability time (&lt;1 min), and farinograph quality number (∼5–15), and a higher degree of softening (∼170–301), than the control CN 16. Wheat line solely expressing HMW-GS 1Dy 12 had a weak dough strength and may be used as a potential material for producing weak-gluten foods.
DOI: 10.6084/m9.figshare.17147845.v1
title: p53-mediated G1 arrest requires the induction of both p21 and Killin in human colon cancer cells

description: The main biological function of the tumor suppressor p53 is to control cell cycle arrest and apoptosis. Among the p53 target genes, p21 has been identified as a key player in p53-mediated G1 arrest, while Killin, via its high DNA binding affinity, has been implicated in S and G2/M arrest. However, whether Killin is involved in G1 arrest remains unclear. This research aimed to explore the role of Killin in p53-mediated G1 arrest. Knockout of <i>killin</i> in human colorectal cells led to a dramatic decrease in p53-mediated G1 arrest upon DNA damage. Moreover, double knockout of <i>killin</i> and <i>p21</i> completely abolished G1 arrest, similar to that of <i>p53</i> knockout cells. We further showed that Killin could upregulate p21 protein expression independent of p53 via ubiquitination pathways. Immunoprecipitation studies indicated that Killin may directly bind to proteasome subunits, thereby disrupting proteasomal degradation of p21. Together, these results demonstrate that Killin is involved in multiple cell cycle checkpoint controls, including p53-mediated G1 arrest.
DOI: 10.6084/m9.figshare.15050633
title: Quality of wheat lines solely expressing high-molecular-weight glutenin allelic variation of 1Dy 12

description: The high-molecular-weight glutenin subunits (HMW-GS) at <i>Glu-D1</i> have a larger contribution to the processing property of wheat flours than those at the <i>Glu-A1</i> and <i>Glu-B1</i> loci and are always expressed in nature. Wheat lines missing one subunit at <i>Glu-D1</i>, either x or y, attract great interest for their potential quality value. Major quality parameters including SDS<i>-</i>sedimentation value, gluten-related indices, and other dough strength parameters such as development time, stability time, degree of softening, and farinograph quality numbers were tested in wheat lines solely expressing HMW-GS 1Dy12 from different backgrounds and compared with a weak gluten wheat control CN 16 to elucidate their quality potential. Wheat line solely expressing HMW-GS 1Dy12 derived from different genetic backgrounds showed similar but low SDS-sedimentation values (∼10 mL) and low wet gluten (∼20–25 g) and dry gluten contents (∼10 g). Additionally, wheat line solely expressing HMW-GS 1Dy 12 also showed a lower development time (&lt;1 min), stability time (&lt;1 min), and farinograph quality number (∼5–15), and a higher degree of softening (∼170–301), than the control CN 16. Wheat line solely expressing HMW-GS 1Dy 12 had a weak dough strength and may be used as a potential material for producing weak-gluten foods.
DOI: 10.14473/csda/qnu3eg/69sple
title: Illustrative data samples.pdf

description: Illustrative data
DOI: 10.14473/csda/qnu3eg/i7einr
title: Ivisible language 2019_FACULTATIVE QUESTIONNAIRE.pdf

description: A QUESTIONNAIRE FOR AN ANIMAL COMMUNICATOR
DOI: 10.14473/csda/qnu3eg/bsn82e
title: 1_aggreagated data_whole dataset N=224.tab

description: Main dataset
DOI: 10.14473/csda/qnu3eg/v8yhtg
title: Coding book, tests of reliability and calculation of indices.pdf

description: Coding book, tests of reliability and calculation of indices
DOI: 10.14473/csda/qnu3eg/w8009g
title: Used photographs.pdf

description: Used photographs
DOI: 10.14473/csda/qnu3eg/x8t2pw
title: Coding book, tests of reliability and calculation of indices.pdf

description: Coding book, tests of reliability and calculation of indices
DOI: 10.6084/m9.figshare.6662468
title: LINC00152 promotes cell cycle progression in hepatocellular carcinoma via miR-193a/b-3p/CCND1 axis

description: Long intergenic non-coding RNA 00152 (LINC00152) is aberrantly expressed in various human malignancies and plays an important role in the pathogenesis. Here, we found that LINC00152 is upregulated in hepatocellular carcinoma (HCC) tissues as compared to adjacent non-neoplastic tissues; gain-and-loss-of-function analyses in vitro showed that LINC00152 facilitates HCC cell cycle progression through regulating the expression of CCND1. LINC00152 knockdown inhibits tumorigenesis in vivo. MS2-RIP analysis indicated that LINC00152 binds directly to miR-193a/b-3p, as confirmed by luciferase reporter assays. Furthermore, ectopic expression of LINC00152 partially halted the decrease in CCND1 expression and cell proliferation capacity induced by miR-193a/b-3p overexpression. Thus, LINC00152 acts as a competing endogenous RNA (ceRNA) by sponging miR-193a/b-3p to modulate its target gene, CCND1. Our findings establish a ceRNA mechanism regulating cell proliferation in HCC via the LINC00152/miR-193a/b-3p/CCND1 signalling axis, and identify LINC00152 as a potential therapeutic target for HCC.