cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive109003.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109004.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109005.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109006.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109007.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109008.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109009.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109010.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109011.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109012.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109013.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109014.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109015.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109016.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.dwvarv
title: Occurrence Download

description: A dataset containing 4354 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chinese Taipei",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mikania micrantha Kunth",
 "Year 2014-2025"
 ]
}

 The dataset includes 4354 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060131-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive109017.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109018.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109019.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109020.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109021.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109022.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.15221468
title: Software and data for "Advection versus diffusion in brain ventricular transport"

description: This repository contains the code, geometries and data used in the paper

 

Advection versus diffusion in brain ventricular transport

by Halvor Herlyng, Ada J. Ellingsrud, Miroslav Kuchta, Inyoung Jeong, Marie E. Rognes, Nathalie Jurisch-Yaksi.

 

The software (code, geometries and data) is licensed under an MIT License.

Contents of this repository:




src.zip
The source code of the model implementation presented in the paper, also available at https://github.com/hherlyng/zebrafish-cilia-csf.


geometries.zip


Computational mesh files (.xdmf format) and surface geometry (.stl) used to generate the ventricular meshes, as well as cylinder meshes used for numerical verification. 



data.zip
The photoconversion and particle tracking data referenced in the paper.


README.md
Readme file describing how to run the software.


LICENSE
The software license.


VideoS1.mp4
Supplementary Video S1 of the paper: A video of zebrafish brain ventricular CSF flow simulated with motile cilia and cardiac pulsatility. Initial view is lateral (xz-plane). Velocity vectors are scaled by magnitude, and colored by the magnitude signed with the x component, such that rostrocaudal flow is red and caudorostral flow is blue. The video spans 24 cardiac cycles at 22 fps rate (half of real-time). 


VideoS2.mp4
Supplementary Video S2 of the paper: Transport of secreted and photoconverted Dendra2 in the zebrafish ventricle. Dual color time-lapse confocal images show the location of unconverted (green) and converted (magenta) signals over time. Acquisition rate: 2.67s per frame. Photoconversion is performed from frame 11 to the end (frame 300).
DOI: 10.5281/zenodo.15042852
title: CDsyn: A Comprehensive Database for Deleterious Human Synonymous SNVs Prediction

description:  A Comprehensive Database for Deleterious Human Synonymous SNVs Prediction
DOI: 10.48597/ambq-mht6
title: Measurement of Inorganics in precipitation at Ispra

description: Measurement of Inorganics in precipitation at Ispra
DOI: 10.48597/bxqx-df77
title: Measurement of Inorganics in air and particle phase at Ispra

description: Measurement of Inorganics in air and particle phase at Ispra
DOI: 10.15468/dl.b7pzcq
title: Occurrence Download

description: A dataset containing 2575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation)",
 "Country is Germany",
 "License is one of (CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Canis lupus, Canis lupus lupus)",
 "Year 2000-2025"
 ]
}

 The dataset includes 2575 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049630-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/m98f-94hn
title: Measurement of Nitrogen_monoxide at Ispra

description: Measurement of Nitrogen_monoxide at Ispra
DOI: 10.48597/nesj-wy5v
title: Measurement of Pm10_mass at Lampedusa

description: Measurement of Pm10_mass at Lampedusa
DOI: 10.48597/mmq7-fjzf
title: Measurement of Inorganics in precipitation at Ispra

description: Measurement of Inorganics in precipitation at Ispra
DOI: 10.48597/vkf8-q8d5
title: Measurement of Nitrogen_dioxide at Ispra

description: Measurement of Nitrogen_dioxide at Ispra
DOI: 10.48597/wqhv-np5k
title: Measurement of Pm10_mass at Lampedusa

description: Measurement of Pm10_mass at Lampedusa
DOI: 10.48597/x42u-e4mq
title: Measurement of Carbon_monoxide at Ispra

description: Measurement of Carbon_monoxide at Ispra
DOI: 10.17026/ar/9r93w4
title: PAN-00138784 - terra sigillata plate type Halt. 3a / Drag. 15/17

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00138784&lt;/p&gt;
description: Modified: 2025-06-24T09:49:16+02:00
DOI: 10.48597/z3a4-cfmq
title: Measurement of Inorganics in air and particle phase at Ispra

description: Measurement of Inorganics in air and particle phase at Ispra
DOI: 10.48597/hay3-b2yj
title: Inorganics in air and particle phase at Lampedusa

description: Measurement of Inorganics in air and particle phase at Lampedusa
DOI: 10.48597/pa8a-8yu8
title: Pm25_mass at Lampedusa

description: Measurement of Pm25_mass at Lampedusa
DOI: 10.48597/t8z5-cwsb
title: Heavy metals at Lampedusa

description: Measurement of Heavy metals at Lampedusa
DOI: 10.48597/xeba-5ev9
title: Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/yymg-m73t
title: Inorganics in precipitation at Lampedusa

description: Measurement of Inorganics in precipitation at Lampedusa
DOI: 10.48597/9w7u-nrx4
title: Measurement of Pm25_mass at Lampedusa

description: Measurement of Pm25_mass at Lampedusa
DOI: 10.48597/hgju-ymar
title: Measurement of Inorganics in air and particle phase at Lampedusa

description: Measurement of Inorganics in air and particle phase at Lampedusa
DOI: 10.48597/pbpm-fj4y
title: Measurement of Nitrogen_dioxide at Preila

description: Measurement of Nitrogen_dioxide at Preila
DOI: 10.48597/ptn2-xuda
title: Measurement of Inorganics in precipitation at Lampedusa

description: Measurement of Inorganics in precipitation at Lampedusa
DOI: 10.48597/xxcf-hv8e
title: Measurement of Heavy metals at Lampedusa

description: Measurement of Heavy metals at Lampedusa
DOI: 10.15468/dl.8zjd3d
title: Occurrence Download

description: A dataset containing 53028 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-4.25449 38.33426,-4.17901 38.5515,-4.54318 38.64883,-4.64507 38.50132,-4.25449 38.33426))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 53028 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049582-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/5cqg-pzzn
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/g4mz-v5mv
title: Measurement of Inorganics in air and particle phase at Lampedusa

description: Measurement of Inorganics in air and particle phase at Lampedusa
DOI: 10.48597/jyvd-ry7x
title: Measurement of Pm25_mass at Lampedusa

description: Measurement of Pm25_mass at Lampedusa
DOI: 10.48597/k79c-4jjd
title: Measurement of Inorganics in precipitation at Lampedusa

description: Measurement of Inorganics in precipitation at Lampedusa
DOI: 10.48597/afxj-8sbq
title: Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/z8yc-zvpm
title: Measurement of Heavy metals at Lampedusa

description: Measurement of Heavy metals at Lampedusa
DOI: 10.48597/8rzp-k3gc
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/ga6r-gqfe
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/hnjz-7srv
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/jcbu-hym4
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/qrw9-y3r5
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/rhy9-vvw2
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/xe57-d2ee
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/8q2k-bkpg
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/aym7-r8r6
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/mw6r-jh4h
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/qdjc-yhsd
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/qm7t-krj5
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/ustn-fr39
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/vy24-ap67
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/cgvx-ycy4
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/dg7t-57xq
title: Measurement of Nitrogen_dioxide at Preila

description: Measurement of Nitrogen_dioxide at Preila
DOI: 10.48597/hynr-j9ck
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/jbap-ad74
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/u387-2ybq
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.48597/bmqg-vzrj
title: Measurement of Inorganics in air and particle phase at Preila

description: Measurement of Inorganics in air and particle phase at Preila
DOI: 10.15468/dl.t57ujg
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tolypeutes tricinctus)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 83 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049633-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/ikiald
title: PAN-00177653 - iron nail general

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00177653&lt;/p&gt;
description: Modified: 2025-08-19T16:57:42+02:00
DOI: 10.5281/zenodo.14285612
title: 3D Reconstruction of Dinoflagellate Chromosomes from Hi-C Data Challenges the Cholesteric Liquid Crystal Hypothesis

description: Data accompanying the following paper:

Philipp, L., Marinov G. K., Todd S., Weber S. C., 3D Reconstruction of Dinoflagellate Chromosomes from Hi-C Data Challenges the Cholesteric Liquid Crystal Hypothesis. In review.

See https://github.com/lucasphilipp1/3D-Reconstruction-of-Dinoflagellate-Chromosomes-from-Hi-C-Data for a description of the files.

See previous version of this zenodo repository for more files.
DOI: 10.5281/zenodo.17913998
title: 3D Reconstruction of Dinoflagellate Chromosomes from Hi-C Data Challenges the Cholesteric Liquid Crystal Hypothesis

description: Data accompanying the following paper:

Philipp, L., Marinov G. K., Todd S., Weber S. C., 3D Reconstruction of Dinoflagellate Chromosomes from Hi-C Data Challenges the Cholesteric Liquid Crystal Hypothesis. In review.

See https://github.com/lucasphilipp1/3D-Reconstruction-of-Dinoflagellate-Chromosomes-from-Hi-C-Data for a description of the files.

See previous version of this zenodo repository for more files.
DOI: 10.7488/ds/8050
title: Confirmation of p-tau Ser356’s association with Alzheimer’s disease pathology and lowering in response to WZ4003 treatment in brain slice cultures. Reply to: “Phospho-tau Ser356 is mostly confined to pre-NFT neurons in Alzheimer’s pathology”

description: This dataset relates to correspondence by Taylor et al. Here we repeat some key experiments from Taylor et al 2024 using the more more specific antibody ab92682. We find that the core findings from our original Taylor et al 2024 paper are robust and reproducible. Using the more specific ab92682 antibody we find that: 1. P-tau Ser356 increases in a Braak stage-dependent manner in human post-mortem temporal cortex (western blot); 2. P-tau Ser356 co-localises with methoxy positive tangles in AD post-mortem brain (both in paraffin sections and using array tomography); 3. P-tauSer356 co-localises with pre-synaptic terminals and astrocytic processes in AD post-mortem brain (array tomography); 4. P-tau Ser356 levels are lowered in response to treatment with the NUAK1/2 inhibitor WZ4003 in live brain slice cultures (mouse organotypic brain slice cultures).
DOI: 10.5281/zenodo.16762348
title: Simulation data for "Slantwise convection and heat transport in icy moon oceans"

description: Model setup and simulation data for "Slantwise convection and heat transport in the icy moon oceans"
DOI: 10.5281/zenodo.16762347
title: Simulation data for "Slantwise convection and heat transport in icy moon oceans"

description: Model setup and simulation data for "Slantwise convection and heat transport in the icy moon oceans"
DOI: 10.15468/dl.3ta2sj
title: Occurrence Download

description: A dataset containing 78347 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Leiothlypis virginiae)",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1951",
 "Year is less than or equal to 2024",
 "Month is greater than or equal to April",
 "Month is less than or equal to July",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 78347 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049615-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/o9n2yj
title: PAN-00176664 - Knickfibel Almgren 20

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00176664&lt;/p&gt;
description: Modified: 2025-07-22T15:55:44+02:00
DOI: 10.15468/dl.72x5hy
title: Occurrence Download

description: A dataset containing 2152665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Uruguay",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2152665 records from 1241 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049608-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dx3d4g
title: Occurrence Download

description: A dataset containing 484656 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anas acuta Linnaeus, 1758",
 "Year 2006-2013"
 ]
}

 The dataset includes 484656 records from 279 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252327-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ckr6ne
title: Occurrence Download

description: A dataset containing 720 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Herpestes sanguineus (Rüppell, 1835))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 720 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064480-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8rxw5e
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Alkanna frigida Boiss."
 ]
}

 The dataset includes 52 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0189462-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dzreft
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionCode is B",
 "TaxonKey is Portulaca L."
 ]
}

 The dataset includes 327 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252339-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wmy83f
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Herpestes fuscus Waterhouse, 1838, Herpestes fuscus Illiger, 1811)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 142 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064522-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-40897
title: Redemption tidings, vol. 4, nos. 1-12, Jan.-Dec. 1928

description: [description english/roman)] Issued monthly. "A full gospel magazine for all believers" -- subtitle. Bound with vol. 3. Includes Missionary supplement to Redemption tidings in each issue (Jan.-Dec. 1928).
DOI: 10.15468/dl.7x7euc
title: Occurrence Download

description: A dataset containing 560435 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Hungary",
 "OccurrenceStatus is Present",
 "Year 1999-2021"
 ]
}

 The dataset includes 560435 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0361622-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.