cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10283103
title: tBiomed: Semantic Table Annotations Benchmark for Biomedical Domain

description: tBiomed is a dataset for tabular data to knowledge graph matching. It is derived for the Biodiversity domain and has two types of tables. On the one hand, Horizontal Relational Tables are where each table represents a collection of entities. On the other hand, Entity Tables represent a single entity. We supported ground truth data from Wikidata as a target knowledge graph (KG).
tBiomed is generated by KG2Tables using two levels of a recursive hierarchy of related concepts in Wikidata.
tBiomed contains 26,778 entity and horizontal tables, while this repository contains only a validation fold of the original data representing 20% of the total of the entire benchmark with its ground truth data (gt). The Full size of this dataset is 1 GB. We will update this repository with the full dataset, including the test fold with its ground truth data in the Future.
Please get in touch if you are interested in the full dataset, 
The supported tasks for semantic table annotations are: 

Topic Detection (TD) links the entire table to an entity or a class from the target KG.
Cell Entity Annotation (CEA) maps individual table cells to entities from the target KG.
Column Type Annotation (CTA) links individual table columns to classes from the target KG.
Column Property Annotation (CPA) detects the relations between column pairs from the target knowledge graph.
Row Annotation (RA) annotates the entire row to a KG entity or property.
DOI: 10.5281/zenodo.10283119
title: tBiomedL: Larger Semantic Table Annotations Benchmark for Biomedical Domain

description: tBiomedL is a dataset for tabular data to knowledge graph matching. It is derived for the Biodiversity domain and has two types of tables. On the one hand, Horizontal Relational Tables are where each table represents a collection of entities. On the other hand, Entity Tables represent a single entity. We supported ground truth data from Wikidata as a target knowledge graph (KG).
tBiomedL is generated by KG2Tables using five levels of a recursive hierarchy of related concepts in Wikidata. It is the successor work of tBiomed
tBiomedL contains 860,479 entity and horizontal tables, while this repository contains only a sample of 1% of the total of the entire benchmark with its ground truth data (gt). The Full size of this dataset is 27 GB. We will update this repository with the full dataset, including the test fold with its ground truth data in the Future.
Please get in touch if you are interested in the full dataset, 
The supported tasks for semantic table annotations are: 

Topic Detection (TD) links the entire table to an entity or a class from the target KG.
Cell Entity Annotation (CEA) maps individual table cells to entities from the target KG.
Column Type Annotation (CTA) links individual table columns to classes from the target KG.
Column Property Annotation (CPA) detects the relations between column pairs from the target knowledge graph.
Row Annotation (RA) annotates the entire row to a KG entity or property.
DOI: 10.5281/zenodo.12588085
title: Wikidata Truthy Dump from March 20, 2024

description: This is the so-called "truthy" dump of Wikidata from on or about March 20, 2024, shared for usage in SemTab 2024 Challenge.

Downloaded from https://www.wikidata.org/wiki/Wikidata:Database_download

See the License section of the above page for license information.

THIS DATA IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
DOI: 10.5281/zenodo.5606585
title: SemTab 2021 BioTable Dataset

description: This dataset was developed in the context of SemTab 2021: Semantic Web Challenge on Tabular Data to Knowledge Graph Matching. It was used to test the participant systems in the Bio-Track in Round 2. Here you can find not only the files for annotation that were available during the competition but also the ground truths used to evaluate the performance of the system.
DOI: 10.5281/zenodo.5706316
title: GitTables benchmark - column type detection

description: <strong>Note: the download page of the entire GitTables corpus is here: https://zenodo.org/record/4943312.</strong> This dataset represents a <strong>small subset</strong> of tables from GitTables curated for benchmarking column type detection methods. This benchmark evaluates systems that match table columns to semantic types from the DBpedia and Schema.org ontologies. It is featured in the SemTab 2021 challenge (CTA task). This dataset consists of the following files: “tables.zip”: directory with a sample of 1101 tables from GitTables. Filenames correspond to table IDs, the first column (without column name) corresponds to row indices, column names are replaced with "col_0", "col_1", etc. which match to the targets and labels (semantic types). “&lt;ontology&gt;_targets.csv”: target columns per table ID, 1 file per ontology (DBpedia or Schema.org): columns are “table_id” (ignore the "_&lt;ontology&gt;" suffix) and “target_column” (i.e. the column that should be annotated). “&lt;ontology&gt;_gt.csv”: ground truth column annotations per table ID, 1 file per ontology: columns are “table_id” (ignore the _&lt;ontology&gt; suffix), “target_column”, “annotation_id”, “annotation_label”. “&lt;ontology&gt;_labels.csv”: unique labels present in the annotated tables, 1 file per ontology: columns are “annotation_id” and “annotation_label”. The labels (semantic types) from each ontology come from: DBpedia: only properties from the DBpedia ontology. Schema.org: properties and types from Schema.org. For the entire GitTables corpus, please refer to this dataset. Visit https://gittables.github.io for more background and contact details.
DOI: 10.15468/dl.e4gggs
title: Occurrence Download

description: A dataset listing the 305496 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Living Specimen, Specimen, Material citation, Material sample, Human Observation, Observation)",
 "Continent is North America",
 "Country is one of (Canada, United States of America, Mexico)",
 "OccurrenceStatus is Present",
 "TaxonKey is Arthropoda"
 ]
}

 The dataset's 305496 records were derived from 1843 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021809-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swh8rx
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Geocrinia vitellina Wardell-Johnson & Roberts, 1989"
 ]
}

 The dataset includes 58 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046250-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3obcte
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Canthigaster bennetti (Bleeker, 1854)",
 "Country is India"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009948-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zz74k
title: Occurrence Download

description: A dataset containing 9880069 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Ecuador"
 ]
}

 The dataset includes 9880069 records from 2101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046254-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26613257.v1
title: Additional file 3 of Molecular characterization of Glaesserella parasuis strains circulating in North American swine production systems

description: Additional file 3.
DOI: 10.15468/dl.vda5y5
title: Occurrence Download

description: A dataset containing 277 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (CHN.31.1_1, CHN.31.3_1, CHN.31.2_1, CHN.31.8_1, CHN.31.6_1)",
 "TaxonKey is Aythya fuligula (Linnaeus, 1758)"
 ]
}

 The dataset includes 277 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067713-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8a995
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.430138 -32.820639, 148.430138 -32.82513, 148.423401 -32.82513, 148.423401 -32.829622, 148.430138 -32.829622, 148.430138 -32.827376, 148.43463 -32.827376, 148.43463 -32.834113, 148.439122 -32.834113, 148.439122 -32.836359, 148.445859 -32.836359, 148.445859 -32.829622, 148.450351 -32.829622, 148.450351 -32.827376, 148.439122 -32.827376, 148.439122 -32.820639, 148.430138 -32.820639), (148.439122 -32.834113, 148.439122 -32.829622, 148.443613 -32.829622, 148.443613 -32.834113, 148.439122 -32.834113)), ((148.423401 -32.807164, 148.427893 -32.807164, 148.427893 -32.804918, 148.423401 -32.804918, 148.423401 -32.807164)), ((148.423401 -32.807164, 148.421155 -32.807164, 148.421155 -32.818393, 148.423401 -32.818393, 148.423401 -32.820639, 148.430138 -32.820639, 148.430138 -32.811655, 148.423401 -32.811655, 148.423401 -32.807164)), ((148.439122 -32.820639, 148.450351 -32.820639, 148.450351 -32.818393, 148.439122 -32.818393, 148.439122 -32.820639)))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067714-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26613320.v1
title: Additional file 1 of Authorship and citation patterns of highly cited biomedical researchers: a cross-sectional study

description: Additional file 1.
DOI: 10.6084/m9.figshare.26613320
title: Additional file 1 of Authorship and citation patterns of highly cited biomedical researchers: a cross-sectional study

description: Additional file 1.
DOI: 10.6084/m9.figshare.26613338.v1
title: Additional file 1 of Identification of QTL for kernel weight and size and analysis of the pentatricopeptide repeat (PPR) gene family in cultivated peanut (Arachis hypogaea L.)

description: Additional file 1: Supplementary Tables S1-S7.
DOI: 10.15468/dl.c26hrf
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Duttaphrynus melanostictus (Schneider, 1799))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1900",
 "BasisOfRecord is one of (Specimen)",
 "Country is one of (Chinese Taipei)",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 20000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 121 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067715-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26694163
title: The Contrasting Age and Degradation State of Reactive Iron-Associated Organic Carbon across Antarctic Land-Sea Continuum

description: Original data for Figure 1, Figure 2, Figure 3a, Figure 4a, Figure S1, Figure S2 and Figure S3.
DOI: 10.6084/m9.figshare.26694163.v2
title: The Contrasting Age and Degradation State of Reactive Iron-Associated Organic Carbon across Antarctic Land-Sea Continuum

description: Original data for Figure 1, Figure 2, Figure 3a, Figure 4a, Figure S1, Figure S2 and Figure S3.
DOI: 10.6084/m9.figshare.26694163.v1
title: The Contrasting Age and Degradation State of Reactive Iron-Associated Organic Carbon across Antarctic Land-Sea Continuum

description: Original data for Figure 1, Figure 2, Figure 3a, Figure 4a, Figure S1, Figure S2 and Figure S3.
DOI: 10.13020/9m2p-ze11
title: Advancing Treatment for Pancreatitis: A Prospective Observational Study of TPIAT (POST Study). Protocol, Manual of Procedures, and Case Report Forms

description: This "dataset" contains the final version of the POST Study's protocol, Manual of Procedures (MOP), and Case Report Forms (CRFs), for reference generally and specifically for the public-use datasets, which will be made available after the primary publications appear.
description: The included files are the latest versions of the protocol and MOP and of each CRF. The MOP is contained in a .pdf file and describes all study procedures, including details about completing each CRF. The CRFs are contained in a .pdf file; each CRF has a form number and item numbers for each data item collected. When the public-use datasets are published, their data dictionaries will refer to these form numbers and data items. 

Re the dates listed below, the start date is the date when recruitment started, while the end date is the data of the form 500 confirming a 12-month visit in the POST Study.
DOI: 10.6084/m9.figshare.26696091
title: Additional file 1 of Traditional japanese diet score and the sustainable development goals by a global comparative ecological study

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26696091.v1
title: Additional file 1 of Traditional japanese diet score and the sustainable development goals by a global comparative ecological study

description: Supplementary Material 1
DOI: 10.15468/dl.n9qmqf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.618785 -32.82513, 148.618785 -32.829622, 148.621031 -32.829622, 148.621031 -32.834113, 148.627769 -32.834113, 148.627769 -32.827376, 148.621031 -32.827376, 148.621031 -32.82513, 148.618785 -32.82513))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067717-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26696097
title: Additional file 2 of Transcriptome sequencing and expression analysis in peanut reveal the potential mechanism response to Ralstonia solanacearum infection

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26696097.v1
title: Additional file 2 of Transcriptome sequencing and expression analysis in peanut reveal the potential mechanism response to Ralstonia solanacearum infection

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.25538581
title: Additional file 2 of Extracellular vesicles-coupled miRNAs from oviduct and uterus modulate signaling pathways related to lipid metabolism and bovine early embryo development

description: Additional file 2: A. All enriched signaling pathways and number of genes (hits) predicted to be regulated by miRNAs exclusive in OF-EVs. B. All enriched signaling pathways and number of genes (hits) predicted to be regulated by miRNAs exclusive in UF-EVs. C. All enriched signaling pathways and number of genes (hits) predicted to be regulated by the miRNA up regulated in OF-EVs. D. All enriched signaling pathways and number of genes (hits) predicted to be regulated by miRNAs up regulated in UF-EVs.
DOI: 10.6084/m9.figshare.25538581.v1
title: Additional file 2 of Extracellular vesicles-coupled miRNAs from oviduct and uterus modulate signaling pathways related to lipid metabolism and bovine early embryo development

description: Additional file 2: A. All enriched signaling pathways and number of genes (hits) predicted to be regulated by miRNAs exclusive in OF-EVs. B. All enriched signaling pathways and number of genes (hits) predicted to be regulated by miRNAs exclusive in UF-EVs. C. All enriched signaling pathways and number of genes (hits) predicted to be regulated by the miRNA up regulated in OF-EVs. D. All enriched signaling pathways and number of genes (hits) predicted to be regulated by miRNAs up regulated in UF-EVs.
DOI: 10.6084/m9.figshare.26695128
title: Additional file 3 of Extracellular vesicles-coupled miRNAs from oviduct and uterus modulate signaling pathways related to lipid metabolism and bovine early embryo development

description: Additional file 3. miRNA-mRNA target interactions by miRNAs up-regulated in OF-EVs and UF-EVs.
DOI: 10.6084/m9.figshare.26695128.v1
title: Additional file 3 of Extracellular vesicles-coupled miRNAs from oviduct and uterus modulate signaling pathways related to lipid metabolism and bovine early embryo development

description: Additional file 3. miRNA-mRNA target interactions by miRNAs up-regulated in OF-EVs and UF-EVs.
DOI: 10.6084/m9.figshare.26695131
title: Additional file 4 of Extracellular vesicles-coupled miRNAs from oviduct and uterus modulate signaling pathways related to lipid metabolism and bovine early embryo development

description: Additional file 4. miRNA-mRNA target interactions by miRNAs exclusives to OF-EVs and UF-EVs.
DOI: 10.6084/m9.figshare.26695131.v1
title: Additional file 4 of Extracellular vesicles-coupled miRNAs from oviduct and uterus modulate signaling pathways related to lipid metabolism and bovine early embryo development

description: Additional file 4. miRNA-mRNA target interactions by miRNAs exclusives to OF-EVs and UF-EVs.
DOI: 10.6084/m9.figshare.26695137
title: Additional file 6 of Extracellular vesicles-coupled miRNAs from oviduct and uterus modulate signaling pathways related to lipid metabolism and bovine early embryo development

description: Additional file 6: A. Complete list of all statistically enriched terms and related genes to miRNAs upregulated in OF-EVs. B. Complete list of all statistically enriched terms and related genes to miRNAs upregulated in UF-EVs.
DOI: 10.6084/m9.figshare.26695137.v1
title: Additional file 6 of Extracellular vesicles-coupled miRNAs from oviduct and uterus modulate signaling pathways related to lipid metabolism and bovine early embryo development

description: Additional file 6: A. Complete list of all statistically enriched terms and related genes to miRNAs upregulated in OF-EVs. B. Complete list of all statistically enriched terms and related genes to miRNAs upregulated in UF-EVs.
DOI: 10.6084/m9.figshare.26613287
title: Additional file 2 of Combining systems thinking approaches and implementation science constructs within community-based prevention: a systematic review

description: Additional file 2: Details of included studies.
DOI: 10.6084/m9.figshare.26613290
title: Additional file 3 of Combining systems thinking approaches and implementation science constructs within community-based prevention: a systematic review

description: Additional file 3: Quality appraisal of included studies.
DOI: 10.6084/m9.figshare.26613266
title: Additional file 3 of Multivariate genome-wide associations for immune traits in two maternal pig lines

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26696118.v1
title: Additional file 5 of Developing generic templates to shape the future for conducting integrated research platform trials

description: Additional file 5. EU-PEARL Platform Trial Best Practices Tool.
DOI: 10.6084/m9.figshare.26613269.v1
title: Additional file 4 of Multivariate genome-wide associations for immune traits in two maternal pig lines

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26696118
title: Additional file 5 of Developing generic templates to shape the future for conducting integrated research platform trials

description: Additional file 5. EU-PEARL Platform Trial Best Practices Tool.
DOI: 10.6084/m9.figshare.26613269
title: Additional file 4 of Multivariate genome-wide associations for immune traits in two maternal pig lines

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26613266.v1
title: Additional file 3 of Multivariate genome-wide associations for immune traits in two maternal pig lines

description: Supplementary Material 3
DOI: 10.15468/dl.vbjgd3
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.862958 -32.786952, 149.862958 -32.789197, 149.860712 -32.789197, 149.860712 -32.793689, 149.865204 -32.793689, 149.865204 -32.791443, 149.869696 -32.791443, 149.869696 -32.795935, 149.871941 -32.795935, 149.871941 -32.798181, 149.876433 -32.798181, 149.876433 -32.804918, 149.878679 -32.804918, 149.878679 -32.807164, 149.869696 -32.807164, 149.869696 -32.80941, 149.874187 -32.80941, 149.874187 -32.811655, 149.865204 -32.811655, 149.865204 -32.820639, 149.88317 -32.820639, 149.88317 -32.82513, 149.869696 -32.82513, 149.869696 -32.829622, 149.871941 -32.829622, 149.871941 -32.827376, 149.885416 -32.827376, 149.885416 -32.829622, 149.887662 -32.829622, 149.887662 -32.831868, 149.896645 -32.831868, 149.896645 -32.829622, 149.898891 -32.829622, 149.898891 -32.82513, 149.905628 -32.82513, 149.905628 -32.822884, 149.91012 -32.822884, 149.91012 -32.820639, 149.914611 -32.820639, 149.914611 -32.813901, 149.91012 -32.813901, 149.91012 -32.811655, 149.916857 -32.811655, 149.916857 -32.816147, 149.919103 -32.816147, 149.919103 -32.811655, 149.923595 -32.811655, 149.923595 -32.804918, 149.916857 -32.804918, 149.916857 -32.807164, 149.907874 -32.807164, 149.907874 -32.811655, 149.903383 -32.811655, 149.903383 -32.802672, 149.892154 -32.802672, 149.892154 -32.800426, 149.885416 -32.800426, 149.885416 -32.798181, 149.878679 -32.798181, 149.878679 -32.795935, 149.876433 -32.795935, 149.876433 -32.793689, 149.874187 -32.793689, 149.874187 -32.78246, 149.871941 -32.78246, 149.871941 -32.786952, 149.869696 -32.786952, 149.869696 -32.78246, 149.865204 -32.78246, 149.865204 -32.786952, 149.862958 -32.786952), (149.878679 -32.807164, 149.88317 -32.807164, 149.88317 -32.80941, 149.878679 -32.80941, 149.878679 -32.807164), (149.878679 -32.804918, 149.878679 -32.802672, 149.88317 -32.802672, 149.88317 -32.804918, 149.878679 -32.804918), (149.898891 -32.813901, 149.901137 -32.813901, 149.901137 -32.820639, 149.898891 -32.820639, 149.898891 -32.813901), (149.894399 -32.804918, 149.898891 -32.804918, 149.898891 -32.811655, 149.894399 -32.811655, 149.894399 -32.804918), (149.885416 -32.804918, 149.892154 -32.804918, 149.892154 -32.813901, 149.894399 -32.813901, 149.894399 -32.818393, 149.892154 -32.818393, 149.892154 -32.820639, 149.885416 -32.820639, 149.885416 -32.818393, 149.88317 -32.818393, 149.88317 -32.813901, 149.885416 -32.813901, 149.885416 -32.804918)), ((149.856221 -32.780214, 149.856221 -32.78246, 149.860712 -32.78246, 149.860712 -32.780214, 149.856221 -32.780214)), ((149.860712 -32.78246, 149.860712 -32.786952, 149.862958 -32.786952, 149.862958 -32.78246, 149.860712 -32.78246)))"
 ]
}

 The dataset includes 63 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067718-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26696160
title: Additional file 2 of ECM stiffness affects cargo sorting into MSC-EVs to regulate their secretion and uptake behaviors

description: Additional file 2. Identification and quantitative information of miRNAs in stiff-EVs and soft-EVs.