DOI: 10.5281/zenodo.7988299
title: Gene structure prediction results and execution commands and options by GINGER and similar tools

description: Gene structure prediction results and execution commands and options by GINGER and similar tools # GINGER<br> ## Output files<br> - GINGER_Caenorhabditis_elegans.gff<br> - GINGER_Danio_rerio.gff<br> - GINGER_Drosophila_melanogaster.gff<br> - GINGER_Homo_sapiens.gff<br> - GINGER_Oryza_sativa.gff<br> ## Commands<br> - GINGER_command.txt<br> ## Configuration files (option settings)<br> - GINGER_nextflow_Caenorhabditis_elegans.config<br> - GINGER_nextflow_Danio_rerio.config<br> - GINGER_nextflow_Drosophila_melanogaster.config<br> - GINGER_nextflow_Homo_sapiens.config<br> - GINGER_nextflow_Oryza_sativa.config # EVM<br> ## Output files<br> - EVM_Caenorhabditis_elegans.gff<br> - EVM_Danio_rerio.gff<br> - EVM_Drosophila_melanogaster.gff<br> - EVM_Homo_sapiens.gff<br> - EVM_Oryza_sativa.gff<br> ## Commands<br> - EVM_command.txt<br> ## Configuration files (option settings)<br> - EVM_weights_Caenorhabditis_elegans.txt<br> - EVM_weights_Danio_rerio.txt<br> - EVM_weights_Drosophila_melanogaster.txt<br> - EVM_weights_Homo_sapiens.txt<br> - EVM_weights_Oryza_sativa.txt # MAKER<br> ## Output files<br> - MAKER_Caenorhabditis_elegans.gff<br> - MAKER_Danio_rerio.gff<br> - MAKER_Drosophila_melanogaster.gff<br> - MAKER_Oryza_sativa.gff<br> ## Commands<br> - MAKER_command.txt<br> ## configuration files (option settings)<br> - MAKER_bopts_Caenorhabditis_elegans.ctl<br> - MAKER_bopts_Danio_rerio.ctl<br> - MAKER_bopts_Drosophila_melanogaster.ctl<br> - MAKER_bopts_Oryza_sativa.ctl<br> - MAKER_evm_Caenorhabditis_elegans.ctl<br> - MAKER_evm_Danio_rerio.ctl<br> - MAKER_evm_Drosophila_melanogaster.ctl<br> - MAKER_evm_Oryza_sativa.ctl<br> - MAKER_exe_Caenorhabditis_elegans.ctl<br> - MAKER_exe_Danio_rerio.ctl<br> - MAKER_exe_Drosophila_melanogaster.ctl<br> - MAKER_exe_Oryza_sativa.ctl<br> - MAKER_opts_Caenorhabditis_elegans.ctl<br> - MAKER_opts_Danio_rerio.ctl<br> - MAKER_opts_Drosophila_melanogaster.ctl<br> - MAKER_opts_Oryza_sativa.ctl # GINGER<br> ## Output files<br> - GINGER_Caenorhabditis_elegans.gff<br> - GINGER_Danio_rerio.gff<br> - GINGER_Drosophila_melanogaster.gff<br> - GINGER_Homo_sapiens.gff<br> - GINGER_Oryza_sativa.gff<br> ## Commands<br> - GINGER_command.txt<br> ## Configuration files (option settings)<br> - GINGER_nextflow_Caenorhabditis_elegans.config<br> - GINGER_nextflow_Danio_rerio.config<br> - GINGER_nextflow_Drosophila_melanogaster.config<br> - GINGER_nextflow_Homo_sapiens.config<br> - GINGER_nextflow_Oryza_sativa.config # EVM<br> ## Output files<br> - EVM_Caenorhabditis_elegans.gff<br> - EVM_Danio_rerio.gff<br> - EVM_Drosophila_melanogaster.gff<br> - EVM_Homo_sapiens.gff<br> - EVM_Oryza_sativa.gff<br> ## Commands<br> - EVM_command.txt<br> ## Configuration files (option settings)<br> - EVM_weights_Caenorhabditis_elegans.txt<br> - EVM_weights_Danio_rerio.txt<br> - EVM_weights_Drosophila_melanogaster.txt<br> - EVM_weights_Homo_sapiens.txt<br> - EVM_weights_Oryza_sativa.txt # MAKER<br> ## Output files<br> - MAKER_Caenorhabditis_elegans.gff<br> - MAKER_Danio_rerio.gff<br> - MAKER_Drosophila_melanogaster.gff<br> - MAKER_Oryza_sativa.gff<br> ## Commands<br> - MAKER_command.txt<br> ## configuration files (option settings)<br> - MAKER_bopts_Caenorhabditis_elegans.ctl<br> - MAKER_bopts_Danio_rerio.ctl<br> - MAKER_bopts_Drosophila_melanogaster.ctl<br> - MAKER_bopts_Oryza_sativa.ctl<br> - MAKER_evm_Caenorhabditis_elegans.ctl<br> - MAKER_evm_Danio_rerio.ctl<br> - MAKER_evm_Drosophila_melanogaster.ctl<br> - MAKER_evm_Oryza_sativa.ctl<br> - MAKER_exe_Caenorhabditis_elegans.ctl<br> - MAKER_exe_Danio_rerio.ctl<br> - MAKER_exe_Drosophila_melanogaster.ctl<br> - MAKER_exe_Oryza_sativa.ctl<br> - MAKER_opts_Caenorhabditis_elegans.ctl<br> - MAKER_opts_Danio_rerio.ctl<br> - MAKER_opts_Drosophila_melanogaster.ctl<br> - MAKER_opts_Oryza_sativa.ctl # GINGER<br> ## Output files<br> - GINGER_Caenorhabditis_elegans.gff<br> - GINGER_Danio_rerio.gff<br> - GINGER_Drosophila_melanogaster.gff<br> - GINGER_Homo_sapiens.gff<br> - GINGER_Oryza_sativa.gff<br> ## Commands<br> - GINGER_command.txt<br> ## Configuration files (option settings)<br> - GINGER_nextflow_Caenorhabditis_elegans.config<br> - GINGER_nextflow_Danio_rerio.config<br> - GINGER_nextflow_Drosophila_melanogaster.config<br> - GINGER_nextflow_Homo_sapiens.config<br> - GINGER_nextflow_Oryza_sativa.config # EVM<br> ## Output files<br> - EVM_Caenorhabditis_elegans.gff<br> - EVM_Danio_rerio.gff<br> - EVM_Drosophila_melanogaster.gff<br> - EVM_Homo_sapiens.gff<br> - EVM_Oryza_sativa.gff<br> ## Commands<br> - EVM_command.txt<br> ## Configuration files (option settings)<br> - EVM_weights_Caenorhabditis_elegans.txt<br> - EVM_weights_Danio_rerio.txt<br> - EVM_weights_Drosophila_melanogaster.txt<br> - EVM_weights_Homo_sapiens.txt<br> - EVM_weights_Oryza_sativa.txt # MAKER<br> ## Output files<br> - MAKER_Caenorhabditis_elegans.gff<br> - MAKER_Danio_rerio.gff<br> - MAKER_Drosophila_melanogaster.gff<br> - MAKER_Oryza_sativa.gff<br> ## Commands<br> - MAKER_command.txt<br> ## configuration files (option settings)<br> - MAKER_bopts_Caenorhabditis_elegans.ctl<br> - MAKER_bopts_Danio_rerio.ctl<br> - MAKER_bopts_Drosophila_melanogaster.ctl<br> - MAKER_bopts_Oryza_sativa.ctl<br> - MAKER_evm_Caenorhabditis_elegans.ctl<br> - MAKER_evm_Danio_rerio.ctl<br> - MAKER_evm_Drosophila_melanogaster.ctl<br> - MAKER_evm_Oryza_sativa.ctl<br> - MAKER_exe_Caenorhabditis_elegans.ctl<br> - MAKER_exe_Danio_rerio.ctl<br> - MAKER_exe_Drosophila_melanogaster.ctl<br> - MAKER_exe_Oryza_sativa.ctl<br> - MAKER_opts_Caenorhabditis_elegans.ctl<br> - MAKER_opts_Danio_rerio.ctl<br> - MAKER_opts_Drosophila_melanogaster.ctl<br> - MAKER_opts_Oryza_sativa.ctl