cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12333107.v1
title: 16S sequence data from Puigcorbé et al. Frontiers in Microbiology article - Effect of sampling method on particle-attached prokaryotes

description: The study compares the prokaryotic community structure, determined by high-throughput Illumina sequencing of the 16S rRNA genes, found in small (1-53 µm) and large (&gt;53 µm) marine particles collected using oceanographic bottles and in situ pumps. <br><br>The sampling was performed on board of the R/V Aurora Australis (AA-V02 2016/17) between December 8, 2016 and January 21, 2017, in the Dalton and the Mertz polynyas (East Antarctica; 67.2 - 66.8°S and 119.5-145.8°E). Data collection procedures are described in the paper "Sampling device-dependence of prokaryotic community structure on marine particles: higher diversity recovered by in situ pumps than by oceanographic bottles" by Viena Puigcorbé et al., Frontiers in Microbiology. <br><br> Here we provide the raw sequence data, together with the non-rarefied OUT table, taxonomy table and environmental data used in this study. The sequences are in the fasta format, they have treated and quality filtered as described in the article.
DOI: 10.17632/9hns9ss6ny
title: Monoclonal antibodies binding data for SARS-CoV-2 proteins

description: ELISA EC50
The raw dataset of EC50 for the selected IgGs that are specific for SARS2-CoV-2 proteins.  Data points and analyzed set were included in the raw data in excel format.  The data were fit to standard four-parameter logistic equations using GraphPad Prism (GraphPad Software, La Jolla, CA).

BLI (Bio-Layer Interferometry)
The raw data are in excel format which includes data points and fitting points for selected IgGs that are specific for SARS2-CoV-2 proteins.  The binding responses were analyzed by subtracting data from reference, and data were globally fitted with a 1:1 binding model using ForteBio’s Data Analysis software 9.0.
DOI: 10.6084/m9.figshare.20493144.v1
title: Comparative analysis of infected cassava root transcriptomics reveals candidate genes for root rot disease resistance

description: Counting reads in features with htseq-count
DOI: 10.17632/t576ydh9v8
title: Cracks and Potholes in Road Images

description: This database contains images of defects in paved roads in Brazil. The database was developed using images provided by DNIT (National Department of Transport Infrastructure), through the Access to Information Law - Protocol 50650.003556 / 2017-28. The database contains: * 2235 images from highways in the states of Espirito Santo, Rio Grande do Sul and the Federal District, caught between 2014 and 2017; and * Each image has 3 masks - binary images in png format - separated for each type of annotation: road, crack and pothole. The annotation of the road consisted of demarcating the total region corresponding to the vehicle's road. The annotation of cracks and potholes consisted of the selection of the defect as a whole, maintaining its shape as much as possible.
DOI: 10.6084/m9.figshare.28023476.v1
title: Data and Code from: A global synthesis of the ecological effects of co-invasions

description: 1. Globally, the majority of ecosystems are being invaded by multiple co-occurring alien species. While most of the quantitative syntheses have focused on single invasive species impacts, a global-scale quantitative synthesis on the interaction effects of species co-invasions across multiple taxa and levels of ecological organisation remain largely unexplored.2. We address this knowledge gap by synthesizing quantitative information from 256 effect sizes published in 36 studies, that reported the individual and interaction effects of co-occuring alien plant and animal species.3. Although, our meta-analysis showed that the mean interaction effect of co-invasions across a range of variables was antagonistic (i.e., combined effect less than the sum of individual effects), the vote-counting revealed additive interaction effects (i.e., combined effect equal to the sum of individual effects) to dominate individual observations. Also, the frequency of interaction effect types varied significantly with response variables, ecological organization, ecosystems, continents, and study design, thereby indicating the role of these ecological characteristics in shaping co-invasion interaction effects.4. <i>Synthesis</i>. Overall, our synthesis highlights the need for incorporating local ecological complexities in future co-invasion impact research to better predict their interaction effect on biodiversity and ecosystem functioning across spatio-temporal scales. Looking ahead, we call for concerted research efforts on the ecological impacts of co-invasions to unravel the causes of variability in interaction outcomes.
DOI: 10.17632/czwy2pfhn3
title: Relativistic runaway electron avalanche development near the electric field threshold in inhomogeneous air

description: Data of paper submitted to GRL atmospheres (2023) Diniz et al. 
Data description enclosed in the READ_ME.txt file.
DOI: 10.17632/r7vb9k2mc3
title: Data for: How outcome uncertainty, loss aversion and team quality affect stadium attendance in Dutch professional football
DOI: 10.25378/janelia.25298815.v1
title: Simulations from kilosort4 paper

description: Simulations from Kilosort paper (link)."sim_high_drift", "sim_fast_drift", "sim_med_drift", "sim_no_drift", "sim_step_drift", "sim_stepNP2_drift": simulations of electrophysiology data from a Neuropixels probe with varying levels of drift, created using waveforms acquired from drifting recordings from the IBL dataset (waveforms from recordings in "all_waveforms.npz")."sim_hybrid_KS042_2020-11-23", "sim_hybrid_NYU-37_2021-01-25", "sim_hybrid_ZFM-01936_2021-01-24": hybrid simulations, using 3 low drift recordings from Neuropixels probes from the IBL dataset.Each folder has the ephys simulation across 385 channels: "sim.imec0.ap.cbin", along with the header "sim.imec0.ap.ch". We compressed the original binary files using the mtscomp compression scheme from the IBL (https://github.com/int-brain-lab/mtscomp). Please install this library to decompress them using these two files.Each folder also has the spike times and waveforms of the ground-truth units ("st", "cl", and "wfs") in "sim.imec0.ap_params.npz", and the "sim.imec0.ap.meta" probe file that can be used with spikeinterface.Code to create simulations available at https://github.com/mouseland/kilosort, simulation.py.
DOI: 10.6084/m9.figshare.12421124.v1
title: tcr_beta_synrep_set3_00.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.14386388.v1
title: Cytokine array raw data

description: These are the cytokine array raw data for the conditioned medium from M0, TAM(Ca), TAM(CAF), Lx-2, CAF(Ca) and Huh-7.
DOI: 10.6084/m9.figshare.1591212.v3
title: A study of the correlation between sunlight and soil moisture with the abundance of plants

description: This study of correlation between sunlight exposure and soil moisture with plant abundance was conducted in Danby woodlot and grassland of York University by myself and three other group members including Alexandra, Khaula and Houra from BIOL 2050 Ecology Lab 02 on Oct 13 and 20. Oct 13rd was a cloudy and windy day with little sunlight, while Oct 20th was a bit rainy in the morning and then cloudy throughout the day. We started the experiment around 2:45 pm and finished within 2 hours. The purpose of this study was to investigate the system health of Danby Woodlot and Grassland through measuring the sunlight and soil moisture level towards the plants abundance, in order to optimize vegetation. Our group was divided into two pairs, with one conducted the experiment in the grassland and the other pair conducted in the woodlot. Two quadrats were used, one for each pair, to standardize the sample area. The total number of different plants within a quadrat was counted and recorded. The percentage of area in the quadrat covered by sunlight was measured in a scale of 0 (no sunlight) to 3 (full sunlight exposure). The soil moisture was measured by using popsicle stick to collect the soil samples below the ground and place them on paper towels and between fingers to test the relative water content which was recorded in the scale of 0 to 2 (dry, moderate, wet). A total of 160 replicates were recorded – 40 replicates for each pairs x 2 pairs x 2 days.
DOI: 10.6084/m9.figshare.22262491.v7
title: Demonstration Rhinoceros Files and Grasshopper Definitions Used in the Paper EPiC Grasshopper: A Bottom-Up Parametric Tool to Quantify Life Cycle Embodied Environmental Flows of Buildings and Infrastructure Assets

description: This dataset contains:<br>The Rhinoceros3D file used as a standard residential building case study for Australia<br>The Grasshopper3D definitions (×3) used to quantify the life cycle embodied environmental flows of the case study building as well as a parametric case study building and a road sections<br>The Grasshopper3D definitions require EPiC Grasshopper to run. Download it from: https://doi.org/10.6084/m9.figshare.22773653.v1Files are mapped to the associated EPiC Grasshopper plugin version.
DOI: 10.6084/m9.figshare.24305758.v1
title: UnitMatch Demo - data

description: This dataset contains electrophysiological data recorded in five mice chronically implanted with a Neuropixels probe. For each mouse it contains two recordings on consecutive days. We provide the data that is necessary to run UnitMatch and validate the results (https://github.com/EnnyvanBeest/UnitMatch/tree/v1.0.0_UnitMatch), as described in “Tracking neurons across days with high-density probes” (DOI: 10.1101/2023.10.12.562040).<br>These are the mice corresponding to ID 1-5 from Table S1 in the manuscript.
DOI: 10.6084/m9.figshare.26020828.v1
title: DDPCR Plots (QXone files with Key in Excel Sheet)

description: These are the raw ddPCR plots for all data in the manuscript. The KEY excel sheet gives details of what well correspond to each sample.
DOI: 10.6084/m9.figshare.28284455.v1
title: Innovation Management in Chinese New Energy Vehicle Firms

description: This study utilizes data from the Chinese NEV industry, sourced from the “Announcement of Vehicle Manufacturing Enterprises and Products” issued by China's Ministry of Industry and Information Technology. Additionally, patent data and operational business data—including firm age and ownership structure—were obtained from the PatSnap global patent database, TianYanCha, and the National Enterprise Credit Information Publicity System.
DOI: 10.6084/m9.figshare.14157125.v1
title: DADOS.xlsx

description: TABELA DE DADOS SOBRE ALEITAMENTO MATERNO EXCLUSIVO COLETADOS DA POPULAÇÃO ESTUDADA
DOI: 10.6084/m9.figshare.22182964.v1
title: AFM data

description: AFM raw data
DOI: 10.6084/m9.figshare.24995660.v1
title: Flowdata_cutoff_ChaoGao.mat

description: This data is belong to Dr Chao Gao, which cannot be used by others unless the author has given the permission.
DOI: 10.6084/m9.figshare.26272375.v1
title: HisDoc1B Dataset

description: HisDoc1B dataset constructed by DLVCLab of SCUT.
DOI: 10.6084/m9.figshare.5325010.v1
title: Supplementary Material for: Heterologous Expression of Spinosyn Biosynthetic Gene Cluster in Streptomyces Species Is Dependent on the Expression of Rhamnose Biosynthesis Genes

description: Spinosyns are a group of macrolide insecticides produced by <i>Saccharopolyspora spinosa</i>. Although <i>S. spinosa</i> can be used for industrial-scale production of spinosyns, this might suffer from several limitations, mainly related to its long growth cycle, low fermentation biomass, and inefficient utilization of starch. It is crucial to generate a robust strain for further spinosyn production and the development of spinosyn derivatives. A BAC vector, containing the whole biosynthetic gene cluster for spinosyn (74 kb) and the elements required for conjugal transfer and site-specific integration, was introduced into different <i>Streptomyces</i> hosts in order to obtain heterologous spinosyn-producing strains. The exconjugants of different <i>Streptomyces</i> strains did not show spinosyn production unless the rhamnose biosynthesis genes from <i>S. spinosa</i> genomic DNA were present and expressed under the control of a strong constitutive <i>ermE</i>*<i>p</i> promoter. Using this heterologous expression system resulted in yields of 1 μg/mL and 1.5 μg/mL spinosyns in <i>Streptomyces coelicolor</i> and <i>Streptomyces lividans</i>, respectively. This report demonstrates spinosyn production in 2 <i>Streptomyces</i> strains and stresses the essential role of rhamnose in this process. This work also provides a potential alternative route for producing spinosyn analogs by means of genetic manipulation in the heterologous hosts.
DOI: 10.17632/mg958msfpj
title: Data for: An Efficient Denoising of Impulse Noise from MRI using Adaptive Switching Modified Decision Based Unsymmetric Trimmed Median Filter

description: New novel paper for work of research
DOI: 10.6084/m9.figshare.1425046.v2
title: Subject_14_1 from Appelgren and Bengtsson, Feedback on Trait or Action Impacts on Caudate and Paracingulum Activity, Plos one 2015

description: Subject 14 Session Task from Appelgren and Bengtsson, Feedback on Trait or Action Impacts on Caudate and Paracingulum Activity, Plos one 2015
DOI: 10.6084/m9.figshare.14479152.v1
title: Salonen et al. Reliability and Validity of a Dog Personality and Unwanted Behavior Survey

description: Data from Salonen, M.; Mikkola, S.; Hakanen, E.; Sulkama, S.; Puurunen, J.; Lohi, H. Reliability and Validity of a Dog Personality and Unwanted Behavior Survey. <i>Animals </i><b>2021</b>, <i>11</i>.<br>Personality and unwanted behavior questionnaire data of 15,371 Finnish pet dogs.<br>
DOI: 10.6084/m9.figshare.20393931.v3
title: SAIL - Gamma radiation data

description: Quality-controlled observations of gamma radiation counts measured on board the sail ship NRP Sagres during the 2020 SAIL campaign. Missing values are denoted by NA.<br>The structure of the datafile is the following:<br>column 1: date (yyyy-mm-dd)column 2: time (HH:MM:SS)column 3: gamma counts (counts per minute)column 4: longitude (degrees E)column 5: latitude (degrees N)column 6: flag signaling fully ocean day (=1) and fully or partially land day (=0).<br>
DOI: 10.17605/osf.io/b89f6
title: ERP Markers of Visual and Semantic Processing in AI-Generated Images: From Perception to Meaning
DOI: 10.17632/tdfb4fgghy
title: Romanian Earthquake Catalogue (ROMPLUS)

description: ROMPLUS 984-2022 (Romanian earthquake catalogue)

The ROMPLUS catalogue is based on compiled data and on new locations. For the period 984-1979, locations were compiled from the Constantinescu and Marza (1980) catalogue; for the period 1980-1990, all events were located based on analog seismograms. After 1990, location of the earthquakes was done using digital recordings. Between 1990 and the end of 2013, locations were determined using the HYPOPLUS (Oncescu et al., 1996) program, a 1D velocity model and stations corrections. Starting with 2014, the earthquake location is obtained using Antelope software. In the present form, a single magnitude scale (Mw moment magnitude scale) is adopted for all the events. Different magnitude scales (MGR, MS, mb, ML and MD) used before 2014 were converted into Mw, based on calibration relations presented in Oncescu et al., 1999.

References: 
Oncescu M.C., Marza V.I., Rizescu M., Popa M. (1999). The Romanian earthquake catalogue between 984-1997, F.Wenzel et al. (eds.), Vrancea Earthquakes: Tectonics, Hazard and Risk Mitigation, 43-47,  Kluwer Academic Publishers.
Oncescu M.C., Rizescu M., Bonjer K.P. (1996). SAPS – A completely automated and networked seismological acquisition and processing system, Computers & Geosciences 22, 89-97.
Constantinescu L. and Marza V.I. (1980). A computer-compiled and computer-oriented catalogue of Romania’s earthquakes during a millennium (AD 984-1979), Rev. Roum. Geophys. 24, 193-234.
DOI: 10.17632/xfg78kmrpx
title: Raw data - Risk Reclassification With Coronary CTA-Visualized Nonobstructive Coronary Artery Disease According to 2018 American College of Cardiology/American Heart Association Cholesterol Guidelines (An International Multicenter Registry CONFIRM)

description: Research data
DOI: 10.6084/m9.figshare.26539753.v1
title: Dataset_S24_Hook6.6

description: The Hook Database, provided as a fasta file. It must be converted to a Diamond database for use with PhyloToL. This dataset is a curated database of 15,414 GF, used as reference to assign gene families within PhyloToL 6 part 1.
DOI: 10.6084/m9.figshare.27041914.v1
title: Supplmental Data

description: Supplemental Data for Summers et al, "Mice with Lymphatic Dysfunction Develop Pathogenic Lung Tertiary Lymphoid Organs that Model an Autoimmune Emphysema Phenotype of COPD."
DOI: 10.6084/m9.figshare.27157602.v1
title: iPhoneLiDAR_measurement data20241003.csv

description: The LiDAR-equipped iPhone (iPhone-LiDAR) is highly portable for outdoor use and is significantly more cost-effective than other LiDAR-equipped devices such as uncrewed aerial vehicles (UAVs) or ground-based LiDAR. Therefore, this method holds practical promise for small-scale forest measurements. In this study, we conducted terrain mapping and positioning of newly planted small areas in northern Japan, as well as tree height measurements, using iPhone-LiDAR. The iPhone-LiDAR generated highly accurate 3D models, allowing detailed terrain measurements of the planted area. Although there were many false-positive points in the detection of tree positions, manual removal of these points made it possible to create a tree position map. This is believed to significantly reduce the workload compared to traditional survey methods. We also found LiDAR-estimated seedling heights to be underestimated due to some inevitable noise in the point cloud. Improvements in software, scanning, and analytical methodologies will open future possibilities for iPhone-LiDAR applications in forestry practices.
DOI: 10.6084/m9.figshare.7539968.v1
title: AZA_MLE_Jul2018.csv

description: Sex-specific median life expectancies from <i>ex situ </i>populations for 330 animal species
DOI: 10.6084/m9.figshare.7699571.v1
title: Fruits and seed traits of dracaena draco

description: Data used for González-Castro et al. 2019. Unraveling the Seed Dispersal System of an Insular “Ghost” DragonTree (Dracaena draco) in the Wild. p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 7.0px Helvetica}
DOI: 10.17632/6k9yht9szv
title: Data for: Self-healing and Self-cleaning Clear Coating.

description: Response to Reviewers
DOI: 10.17632/d5776y76b6
title: The Monte Carlo event generator AcerMC versions 2.0 to 3.8 with interfaces to PYTHIA 6.4, HERWIG 6.5 and ARIADNE 4.1

description: Abstract The AcerMC Monte Carlo generator is dedicated to the generation of Standard Model background processes which were recognised as critical for the searches at LHC, and generation of which was either unavailable or not straightforward so far. The program itself provides a library of the massive matrix elements (coded by MADGRAPH) and native phase space modules for generation of a set of selected processes. The hard process event can be completed by the initial and the final state radiation, hadr... Title of program: AcerMC version 3.8 Catalogue Id: ADQQ_v2_0 Nature of problem Despite a large repertoire of processes implemented for generation in event generators like PYTHIA [1] or HERWIG [2] a number of background processes, crucial for studying the expected physics of the LHC experiments, is missing. For some of these processes the matrix element expressions are rather lengthly and/or to achieve a reasonable generation efficiency it is necessary to tailor the phasespace selection procedure to the dynamics of the process. That is why it is not practical to imagine tha ... Versions of this program held in the CPC repository in Mendeley Data ADQQ_v1_0; AcerMC version 1.0; 10.1016/S0010-4655(02)00592-1 ADQQ_v2_0; AcerMC version 3.8; 10.1016/j.cpc.2012.10.032 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.25377/sussex.7970561.v1
title: Dataset for Everyday Childhoods research project. David - Recursive Interview

description: This data was collected as part of David's recursive interview, carried out on the 10/10/2014 with Sue Sharpe. This item belongs to the Everyday Childhoods project dataset. For more information, click on the project or collection link.
DOI: 10.6084/m9.figshare.13017716.v1
title: Nicotiana benthamiana AP-MS for TSWV NSs

description: Nicotiana benthamiana AP-MS for TSWV NSs
DOI: 10.6084/m9.figshare.23937111.v1
title: Data resilience and empowerment among COVID-19 nurses survivor in Indonesia

description: the Data resilience and empowerment among COVID-19 nurses survivor in Indonesia
DOI: 10.6084/m9.figshare.29098781.v1
title: Datasets of NMR, XRD, and SEC-MALS

description: We report the semisynthesis of copolymers with a basic skeleton composed of alternating glucose (G)/glucuronate (U) units via the regioselective surface oxidation of plant cellulose crystallites, followed by mechanical shearing of the oxidized crystallites in water. The molecular weights and yields of the resulting G/U copolymers varied depending on the degree of oxidation (DO) of the crystallites and method of mechanical shearing and were approximately 8000‒15000 g/mol and 4‒16%, respectively. Interestingly, the molecular chain length distributions of the G/U copolymers were in good agreement with the length distributions of the dent defects formed on the crystallite surfaces. We conclude that the oxidized surface molecules of the crystallites were stripped during the mechanical shearing process to yield the G/U copolymers, and these parts of the surfaces were identified as the crystallite defects. Thus, novel biobased alternating copolymers, which cannot be artificially synthesized, are produced via the chemical functionalization of plant cellulose crystallites utilizing the two-fold helix structure of the surface molecules as a template
DOI: 10.6084/m9.figshare.6189338.v1
title: Beta1 for the climate space weighted regressions

description: Spatialized monthly values for the LST night sensitivity (beta1) term of the climate space weighted regression (CSWR).
DOI: 10.6084/m9.figshare.21801139.v1
title: Molecularly Self‐Fueled Nano-Penetrator for Nonpharmaceutical Treatment of Thrombosis and Ischemic Stroke

description: The source data include Figure 2c-d, g-h,j-l, Figure 3c-d,f-g,i-k, Figure 4c,f,h, Figure 5c-d, f, i, Figure 6c-d, h, Figure 7c-d,f, h, Supplementary Fig 4, 5b, 6, 7, 8, 9, 10, 12, 13b, 15, 16, 20, 23, 24, and 25.
DOI: 10.6084/m9.figshare.23907633.v1
title: <b>Supplementary Material – </b><b>Seasonal Semideciduous Forest and Cerrado Floristic composition of fragments in Serra das Flores, Ibiapaba Plateau, Ceará, Brazil</b>

description: <b>Table S1 – </b><b>Floristic list of the species of Serra das Flores, Viçosa do Ceará-CE.</b><b>This Supplementary Material is part of the Original Paper published at Rodriguesia - DOI: </b><b>http://dx.doi.org/10.1590/2175-7860202374048</b>
DOI: 10.6084/m9.figshare.29039324.v1
title: Hubbard et al mesocosm data for L&O

description: Data associated with Hubbard et al (2025): <b>Daily temperature variation explains zooplankton community differences in freshwater mesocosms recovering from a natural drought</b>