cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1185112.10fu
title: SH1185112.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.28692488
title: Ontology-Driven AI Integration: Transforming Unstructured Construction Data into Semantic Knowledge Bases

description: This research addresses critical challenges in construction project data management and digital transformation by introducing a novel ontology-driven framework that bridges the gap between unstructured natural language queries and semantically rich project knowledge bases.
DOI: 10.15468/dl.m3avy6
title: Occurrence Download

description: A dataset containing 4318 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Registro de Fauna Silvestre en el Inventario Nacional Forestal y de Fauna Silvestre-SERFOR, Perú"
 ]
}

 The dataset includes 4318 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006874-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9d9p4b
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-140.28059 59.44415,-133.37384 59.44415,-133.37384 62.20685,-140.28059 62.20685,-140.28059 59.44415))",
 "TaxonKey is Platycheirus sabulicola Vockeroth, 1990"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006877-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15109552
title: Data regarding the manuscript: Directionally tunable co- and counter-propagating photon pairs from a nonlinear metasurface [Data set]. In Nanophotonics 13, 3563–3573 (2024)
DOI: 10.5281/zenodo.15109553
title: Data regarding the manuscript: Directionally tunable co- and counter-propagating photon pairs from a nonlinear metasurface [Data set]. In Nanophotonics 13, 3563–3573 (2024)
DOI: 10.15468/dl.cpegu7
title: Occurrence Download

description: A dataset containing 41079 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Vanessa virginiensis (Drury, 1773)"
 ]
}

 The dataset includes 41079 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006876-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ej8tfn
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Month is one of (June, July, August)",
 "OccurrenceStatus is Present",
 "TaxonKey is Vermivora cyanoptera Olson & Reveal, 2009"
 ]
}

 The dataset includes 176 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006878-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z7q7ef
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-138.67376 60.08312,-133.33276 60.08312,-133.33276 61.4022,-138.67376 61.4022,-138.67376 60.08312))",
 "TaxonKey is Sargus viridis Say, 1823"
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006879-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15109541
title: Toy input dataset for "snrnaseq-step1-preprocessing" code, from Wilson et al. 2025 (https://doi.org/10.1101/2025.02.05.636667)

description: This is a toy dataset that can be used to run code step #1 from Wilson et al. 2025 (https://doi.org/10.1101/2025.02.05.636667), which performs dataset building and preprocessing of single-nucleus RNA sequencing data (Github: https://github.com/amwilson149/snrnaseq-step1-preprocessing/tree/main).

To test the code on this dataset, place these files in the 'data' directory of the code repository, and unzip the compressed files. Then run the script.

 

A description of the study using this code follows:

For people with HIV (PWH), substance use disorders (SUDs) are a prominent neurological risk factor, and the impacts of both on dopaminergic pathways are a potential point of deleterious convergence. Here, we profile, at single nucleus resolution, the substantia nigra (SN) transcriptomes of 90 postmortem donors in the context of chronic HIV and opioid/cocaine SUD, including 67 prospectively characterized PWH. We report altered microglial expression for hundreds of pro- and anti-inflammatory regulators attributable to HIV, and separately, to SUD. Stepwise, progressive microglial dysregulation, coupled to altered SN dopaminergic and GABAergic signaling, was associated with SUD/HIV dual diagnosis and further with lack of viral suppression in blood. In virologically suppressed donors, SUD comorbidity was associated with microglial transcriptional changes permissive for HIV infection. We report HIV-related downregulation of monoamine reuptake transporters specifically in dopaminergic neurons regardless of SUD status or viral load, and additional transcriptional signatures consistent with selective vulnerability of SN dopamine neurons.
DOI: 10.5281/zenodo.15109542
title: Toy input dataset for "snrnaseq-step1-preprocessing" code, from Wilson et al. 2025 (https://doi.org/10.1101/2025.02.05.636667)

description: This is a toy dataset that can be used to run code step #1 from Wilson et al. 2025 (https://doi.org/10.1101/2025.02.05.636667), which performs dataset building and preprocessing of single-nucleus RNA sequencing data (Github: https://github.com/amwilson149/snrnaseq-step1-preprocessing/tree/main).

To test the code on this dataset, place these files in the 'data' directory of the code repository, and unzip the compressed files. Then run the script.

 

A description of the study using this code follows:

For people with HIV (PWH), substance use disorders (SUDs) are a prominent neurological risk factor, and the impacts of both on dopaminergic pathways are a potential point of deleterious convergence. Here, we profile, at single nucleus resolution, the substantia nigra (SN) transcriptomes of 90 postmortem donors in the context of chronic HIV and opioid/cocaine SUD, including 67 prospectively characterized PWH. We report altered microglial expression for hundreds of pro- and anti-inflammatory regulators attributable to HIV, and separately, to SUD. Stepwise, progressive microglial dysregulation, coupled to altered SN dopaminergic and GABAergic signaling, was associated with SUD/HIV dual diagnosis and further with lack of viral suppression in blood. In virologically suppressed donors, SUD comorbidity was associated with microglial transcriptional changes permissive for HIV infection. We report HIV-related downregulation of monoamine reuptake transporters specifically in dopaminergic neurons regardless of SUD status or viral load, and additional transcriptional signatures consistent with selective vulnerability of SN dopamine neurons.
DOI: 10.15468/dl.hu23ce
title: Occurrence Download

description: A dataset containing 124579 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-10000.0",
 "TaxonKey is Myocastor coypus (Molina, 1782)"
 ]
}

 The dataset includes 124579 records from 1165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006875-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28692521
title: Ideas on Physics and Cultural Astronomy, Collected Papers

description: Discusses the development of the measurement of the astronomical units from ancient Egypt to the 19th century. Delves into cultural astronomy and myths about eclipses. Offer foundation principles on physics.
DOI: 10.15468/dl.chcf9q
title: Occurrence Download

description: A dataset containing 592 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Month is one of (July, June, August)",
 "TaxonKey is Vermivora chrysoptera (Linnaeus, 1766)"
 ]
}

 The dataset includes 592 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006880-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ymh5vb
title: Occurrence Download

description: A dataset containing 5811 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eucidaris tribuloides (Lamarck, 1816)"
 ]
}

 The dataset includes 5811 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006882-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6r65fx
title: Occurrence Download

description: A dataset containing 12951 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Roadkill"
 ]
}

 The dataset includes 12951 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006881-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5nhzmx
title: Occurrence Download

description: A dataset containing 12951 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Roadkill"
 ]
}

 The dataset includes 12951 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006883-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dppv8s
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-77.09307 -0.60521,-70.82293 -0.60521,-70.82293 7.38964,-77.09307 7.38964,-77.09307 -0.60521))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hyloxalus vergeli Hellmich, 1940"
 ]
}

 The dataset includes 271 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006884-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15109642
title: lavanguardia_dataset

description: El dataset "lavanguardia_dataset.csv" contiene información extraída de noticias de la portada de La Vanguardiamediante web scraping con Selenium. Incluye detalles clave sobre cada artículo recopilado, como el título, enlace, fecha de publicación, imagen destacada, autor y epígrafe.

Características del dataset:





Title: Título del artículo.




Link: URL del artículo en La Vanguardia.




Date: Fecha de publicación.




Image: Enlace a la imagen destacada del artículo.




Author: Nombre del autor.




Epigraph: Resumen o epígrafe de la noticia.



Este dataset es útil para análisis de tendencias periodísticas, estudios de redacción y minería de datos en noticias.
DOI: 10.5281/zenodo.15109643
title: lavanguardia_dataset

description: El dataset "lavanguardia_dataset.csv" contiene información extraída de noticias de la portada de La Vanguardiamediante web scraping con Selenium. Incluye detalles clave sobre cada artículo recopilado, como el título, enlace, fecha de publicación, imagen destacada, autor y epígrafe.

Características del dataset:





Title: Título del artículo.




Link: URL del artículo en La Vanguardia.




Date: Fecha de publicación.




Image: Enlace a la imagen destacada del artículo.




Author: Nombre del autor.




Epigraph: Resumen o epígrafe de la noticia.



Este dataset es útil para análisis de tendencias periodísticas, estudios de redacción y minería de datos en noticias.
DOI: 10.15468/dl.z4ffdh
title: Occurrence Download

description: A dataset containing 2863 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diceros bicornis (Linnaeus, 1758)"
 ]
}

 The dataset includes 2863 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006886-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tf9ygs
title: Occurrence Download

description: A dataset listing the 736 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Flora of Sumatra : Vascular plant collection from Batang Toru Forest deposited in ANDA Herbarium"
 ]
}

 The dataset's 736 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006885-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fkw9s4
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-142.66109 57.393,-132.0072 57.393,-132.0072 73.14876,-142.66109 73.14876,-142.66109 57.393))",
 "TaxonKey is Suillia apicalis (Loew, 1862)"
 ]
}

 The dataset includes 67 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006889-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xxhpte
title: Occurrence Download

description: A dataset containing 3142 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mimosa tenuiflora (Willd.) Poir."
 ]
}

 The dataset includes 3142 records from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006890-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive154758.20241212.9.2
title: Streptococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154758.20251217.10
title: Streptococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154759.20241212.9.2
title: Kingella kingae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154759.20251217.10
title: Kingella kingae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154760.20241212.9.2
title: Actinomyces graevenitzii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154760.20251217.10
title: Actinomyces graevenitzii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.17632/rzjphbvz9f.1
title: ChakmaLipī Dataset

description: This dataset contains 37,708 handwritten character images of the Chakma language, an endangered indigenous language of the Chittagong Hill Tracts in Bangladesh. The collection covers all 48 graphemes of the Chakma script, including 38 basic characters (vowels and consonants) and 10 numerals (0-9).

Specifications:
Format: .png images
Dimensions: 40 x 40 pixels
Channels: 3 (RGB)
Total Classes: 48
Total Samples: 37,708
Directory Structure: The root folder contains 48 sub-directories, each corresponding to a specific class label.
DOI: 10.13145/bacdive154761.20241212.9.2
title: Curvibacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154761.20251217.10
title: Curvibacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154762.20241212.9.2
title: Capnocytophaga canimorsus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.17632/bvt6m6bwzx
title: Series of N-of-1 trials to detect the effects of ultra-diluted delta SARS-CoV-2 spike protein in expression of interferons in healthy human volunteers

description: This paper reports a series of double-blind, placebo-controlled N-of-1 trials assessing iAttos, an ultra-diluted delta SARS-CoV-2 spike protein homeopathic preparation, for immunomodulatory effects on nine cytokines (IFNs α/β/γ, IL-1/6/8/10, TGF-β1/3) in 10 healthy volunteers using multiple crossover cycles with intensive longitudinal sampling.
DOI: 10.13145/bacdive154762.20251217.10
title: Capnocytophaga canimorsus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154763.20241212.9.2
title: Streptococcus pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154763.20251217.10
title: Streptococcus pneumoniae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154764.20241212.9.2
title: Escherichia coli

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.txje82
title: Occurrence Download

description: A dataset containing 1913 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Morus nigra, Morus atrata, Morus cretica, Morus laciniata, Morus nigra dentata, Morus nigra laciniata, Morus nigra lobata, Morus nigra microcarpa, Morus nigra scabra, Morus petiolaris, Morus scabra, Morus siciliana)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970",
 "Year is less than or equal to 2024",
 "CoordinateUncertaintyInMeters is greater than or equal to 0",
 "CoordinateUncertaintyInMeters is less than or equal to 4500"
 ]
}

 The dataset includes 1913 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078775-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/bvt6m6bwzx.1
title: Series of N-of-1 trials to detect the effects of ultra-diluted delta SARS-CoV-2 spike protein in expression of interferons in healthy human volunteers

description: This paper reports a series of double-blind, placebo-controlled N-of-1 trials assessing iAttos, an ultra-diluted delta SARS-CoV-2 spike protein homeopathic preparation, for immunomodulatory effects on nine cytokines (IFNs α/β/γ, IL-1/6/8/10, TGF-β1/3) in 10 healthy volunteers using multiple crossover cycles with intensive longitudinal sampling.
DOI: 10.13145/bacdive154764.20251217.10
title: Escherichia coli

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.3535/7b1-9c5-1xa
title: Noctua Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/da8-5r4-mnj
title: Xanthorhoe Hübner, [1825]

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/k9d-hlt-0g3
title: Speranza Curtis, 1828

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/kb1-d0p-9qq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.13145/bacdive154765.20241212.9.2
title: Escherichia coli

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154765.20251217.10
title: Escherichia coli

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.3535/383-nv5-ll3
title: Noctua Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/74v-hgg-rb4
title: Noctua Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.13145/bacdive154766.20241212.9.2
title: Escherichia coli

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154766.20251217.10
title: Escherichia coli

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154767.20241212.9.2
title: Bacillus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154767.20251217.10
title: Bacillus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154768.20241212.9.2
title: Bifidobacterium longum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive154768.20251217.10
title: Bifidobacterium longum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.