cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.n7j8q/7
title: Table of Cytochrome b Sequences

description: A table listing the name of each individual sequenced for cytochrome b, its collection number, tissue collection code, collection locality, haplotype, the Genbank accession number of its cytochrome b sequence, and the code for that individual's cytochrome b sequence used in the *BEAST and EBSP xml files.
DOI: 10.5061/dryad.n7j8q/8
title: Table of Nuclear Locus Sequences

description: A table listing the name of each individual sequenced for any of the seven nuclear loci, its collection number, tissue collection code, collection locality, haplotype of each of nuclear locus sequenced for that individual, the Genbank accession number of each nuclear locus sequenced for that individual, and the codes for that individual's nuclear locus sequences used in the *BEAST and EBSP xml files.
DOI: 10.5061/dryad.nk143/1
title: Genotypes for farmers' varieties of barley in the Gamo Highlands of Ethiopia at 13 microsatellite loci

description: Barley samples were collected in the field in Ethiopia, through leaf samples in situ, or seeds planted in the greenhouse at the University of Montana.  Genotyping was performed on an ABI Genetic Analyzer, and genotypes were determined using ABI Genemapper software.
DOI: 10.5061/dryad.p9t061vc/1
title: Time calibrated tree XML

description: XML file created using BEAUti v1.6.2. to produce the time-calibrated phylogeny presented in Figure 1 of the manuscript. The tree contains 85 taxa and 8 fossil or biogeographic calibration points. The file can be run in Beast v1.6.2.
DOI: 10.5061/dryad.p9t061vc/2
title: Morphological measurements (Table S5)

description: Morphological measurements of 2 males specimens of the 57 Himalayan core Corvoidea species taken by Jonathan Kennedy at the Field Museum of Natural History Chicago.
DOI: 10.5061/dryad.03kb7/1
title: Alsophiini_DNA_1
DOI: 10.5061/dryad.03kb7/2
title: Alsophiini_DNA_2
DOI: 10.5061/dryad.24251/1
title: Amphibian Body lengths

description: Average body lengths of male and female amphibian species (snout-vent length of anurans and caudates, total length of caecilians) collated from the published literature.  When more than one source is listed for a species, the average of both sources was used.
DOI: 10.5061/dryad.31cc4/1
title: Vole data lifespan, oxidative damage, food intake and body mass

description: An Excel data file with the lifespan, oxidative damage and morphological measurements taken from laboratory measurements originally sourced from Jane McLaren's PhD thesis, University of Aberdeen. Cold and warm denotes housing temperature voles maintained at. Vit E and vit C are vitamin E supplemented and vitamin C supplemented respectively. ENDO is endonuclease III and FPG is formamidopyrimidine-DNA-glycosylase. Lifespan data in days. Food intake in grams per day, body mass in grams, hepatic lipid peroxidation in nmol mg protein, DNA damage in arbitrary units all collected at 11 months of age.
DOI: 10.5061/dryad.4950k/1
title: Table S1

description: Tabulated microarray data in means +/- standard deviation, n = 3.
DOI: 10.5061/dryad.4950k/2
title: Table S2

description: Ratios of experimental vs control microarray data in means +/- standard deviations, n = 3.
DOI: 10.5061/dryad.553hc134/1
title: Bruna&SegalindeAndrade_AJB_data

description: Data on plant growth and abiotic conditions in common gardens described in Bruna and Segalin de Andrade (2011).
DOI: 10.5061/dryad.682t7442/2
title: Katatopygia_matrix

description: Matrix for phylogenetic analysis and resulting trees.
DOI: 10.5061/dryad.7fq7d558/1
title: Wolbachia_wsp_QPCR_whole_ants
DOI: 10.5061/dryad.7pd82/1
title: microsatellite allele frequencies

description: Microsatellite DNA allele frequencies in base pairs
DOI: 10.5061/dryad.7pd82/2
title: Stomach contents

description: proportional diet contents (range from 0 - 1.0) for pygmy whitefish
DOI: 10.5061/dryad.7pd82/3
title: Stable isotope data

description: Stable isotope (C, N) for Chignik Lake pygmy whitefish collected in 2008, 2009
DOI: 10.5061/dryad.7pd82/4
title: distancesfromlandmarks_dryad

description: linear distances from landmark data for pygmy whitefish collected 2008, 2009 from Chignik Lake
DOI: 10.5061/dryad.868sm/20
title: SEM enlargement of NMNH198674, showing lineations in carbon parallel to acicular pyrite crystals (Fig 2B)
DOI: 10.5061/dryad.868sm/21
title: SEM of NMNH198662, isolated Wiwaxia sclerite

description: Showing acicular pyrite and later spheroidal overgrowths; note the shape of the end of the sclerite.  The microvillar fabric, although not evident in the carbon film, is picked out by the pyrite needles.
DOI: 10.5061/dryad.868sm/22
title: SEM of Burgessochaeta, NMNH198634 (Fig. 2G)

description: Note the framboidal form of pyrite in chaetae.
DOI: 10.5061/dryad.868sm/23
title: SEM enlargement of Burgessochaeta, NMNH198634 (Fig. 2H)
DOI: 10.5061/dryad.868sm/24
title: SEM of Burgessochaeta, NMNH198634

description: Further chaetae with similar preservation
DOI: 10.5061/dryad.868sm/25
title: SEM enlargement of Burgessochaeta, NMNH198634, showing framboidal pyrite in chaetae
DOI: 10.5061/dryad.868sm/26
title: Chaetae of a typical Canadia specimen (NMNH199771); SEM

description: Chaetae are replaced by 'massive' pyrite with no obvious crystals.  Note that occasional Wiwaxia specimens showed a similar preservational style.
DOI: 10.5061/dryad.868sm/27
title: Part of ROM57195, Wiwaxia, containing amorphous pyrite

description: Emphasizing that pyrite is not always associated with an acicular habit.
DOI: 10.5061/dryad.868sm/28
title: ROM 57195 (Fig. 3A), colour image highlighting pyritization
DOI: 10.5061/dryad.868sm/29
title: ROM 61512 (Fig. 3B) – 'juvenile' specimen, partly enrolled (colour image file)
DOI: 10.5061/dryad.87js01tv/1
title: S_hangoei_AFLP_scores

description: Documentation to S_hangoei_AFLP_scores This text file contains the scored AFLP data for Fst calculations and Structure runs. A total of 379 loci are included, 106 strains from four different populations. The first row (except column 1 and 2) contain the names of the loci (Loc_01 to Loc_379). The first column (as of row 2) contains the strain designation consisting of 4 letter and 2-3 numbers. SH represents species designation, i.e. Scrippsiella aft. hangoei (Dinophyceae), the next two letters indicate the lake from which the strain originates (AB=Abraxas, HI = Highway, MC = McNeil, VE = Vereteno; all lakes located in the Vestfold Hills, Antarctica), the last 2-3 digits represent the strain number. The third column (as of row 2) indicates lake population from which the strain originates. ABRA = Lake Abraxas, HIGH = Highway Lake, MCNEIL = McNeil Lake, VERE = Lake Vereteno. All subsequent columns give scores for presence of AFLP peaks. 1 = presence, 2 = absence of peak. There are no missing data.
DOI: 10.5061/dryad.bn43b/3
title: Microsatellite data for Lough Neagh sticklebacks

description: Microsatellite data for nine loci in sticklebacks from the Lough Neagh catchment in Northern Ireland, UK.
DOI: 10.5061/dryad.cr1c1/11
title: 2010-05-03
DOI: 10.5061/dryad.cr1c1/12
title: 2010-05-05
DOI: 10.5061/dryad.cr1c1/13
title: 2010-05-06
DOI: 10.5061/dryad.cr1c1/14
title: 2010-05-07
DOI: 10.5061/dryad.cr1c1/15
title: 2010-06-09
DOI: 10.5061/dryad.cr1c1/16
title: 2010-06-10
DOI: 10.5061/dryad.cr1c1/17
title: 2010-06-11
DOI: 10.5061/dryad.cr1c1/18
title: 2010-06-14
DOI: 10.5061/dryad.cr1c1/19
title: 2010-06-15
DOI: 10.5061/dryad.cr1c1/20
title: 2010-06-19
DOI: 10.5061/dryad.n77k3/1
title: Dive parameter data used in statistical analysis

description: Dive parameters for Ziphius cavirostris, calculated from DTAG data collected in the field.  Further details of the experimental methods and data processing are included in the manuscript and electronic supplemental material.  Abbreviations: max, maximum; m, meters; sec, seconds; h, hours; Hz, Hertz; id, identification code.
DOI: 10.5061/dryad.n77k3/2
title: DTAG non-acoustic sensor data from 2010 (whale ID zc10_272a)
DOI: 10.5061/dryad.n77k3/3
title: DTAG non-acoustic sensor data from 2011 (whale ID zc11_267a)
DOI: 10.5061/dryad.n77k3/4
title: MFA sonar received levels

description: Received levels (RLs) of mid-frequency active sonar sounds from controlled exposure experiments and incidental exposure to U.S. Naval exercises.  Levels were measured using recordings obtained by tagging Cuvier's beaked whales (Ziphius cavirostris) with DTAGs, digital archival tags that record acoustic data and animal movement data.  RLs are reported in dB re 1 uPa rms, measured in a 1/3 octave band centered on the signal frequency; reported levels are the highest in any one 200 msec window over the duration of the recorded signal.
DOI: 10.5061/dryad.nb259/1
title: Sequence Counts in 30C-Salt
DOI: 10.5061/dryad.nb259/2
title: Sequence Counts in 30C+salt
DOI: 10.5061/dryad.s4h53/1
title: Liow_Supplementary_Text

description: Supplementary text for main article
DOI: 10.5061/dryad.s4h53/2
title: S Table 1 Liow

description: Supplementary Table 1
DOI: 10.5061/dryad.s4h53/3
title: S Table 2 Liow

description: Supplementary Table 2
DOI: 10.5061/dryad.s4h53/4
title: S Table 3 Liow

description: Supplementary Table 3
DOI: 10.5061/dryad.sr927n43/1
title: Psoraleeae_Chronogram_Fig1

description: Chronogram representing the maximum clade credibility tree estimated in BEAST based on total evidence across eight DNA regions using mixed models. Mean divergence dates shown for key nodes. Gray bars represent the 95% high posterior density credibility interval for node age. * nodes used as calibration points. Arrow denotes shift from/to mesic (m) or xeric (x) habitat hypothesized along the lineage shown. Ingroup: P = Pediomelum; Ps. = Psoralidium; R. = Rupertia; O. = Orbexilum; H. = Hoita. Outgroup: C. = Cullen; Ot. = Otholobium; B. = Bituminaria; G. = Glycine; Ph. = Phaseolus; D. = Desmodium. Numbers following taxon names represent accession numbers with reference to previous work
DOI: 10.5061/dryad.t30bh/1
title: NGS data associated with this study

description: This file contains the processed NGS data associated with the publication. Sequences have been collapsed to unique haplotypes and filtered for analysis. If you wish to use these files we suggest you contact the corresponding authors Elizabeth L Clare (e.clare@qmul.ac.uk or elclare.evol.biology@gmail.com) who can explain what steps have been conducted and how. She will be happy to answer any questions, explain the nature of the data and its limitations.
DOI: 10.5061/dryad.t30bh/2
title: Dryad Read ME
DOI: 10.5061/dryad.vd61h/2
title: Sound files 1

description: Recordings of long-billed hermit (Phaethornis longirostris) songs from La Selva Costa Rica, 2010-2013. FIrst subset from a total of four.
DOI: 10.5061/dryad.vd61h/3
title: Sound files 2

description: Recordings of long-billed hermit (Phaethornis longirostris) songs from La Selva Costa Rica, 2010-2013. Second subset from a total of four.
DOI: 10.5061/dryad.vd61h/4
title: Sound files 3

description: Recordings of long-billed hermit (Phaethornis longirostris) songs from La Selva Costa Rica, 2010-2013. Third subset from a total of four.
DOI: 10.5061/dryad.vd61h/5
title: Sound files 4

description: Recordings of long-billed hermit (Phaethornis longirostris) songs from La Selva Costa Rica, 2010-2013. Four subset from a total of four.
DOI: 10.5061/dryad.vd61h/6
title: Metadata from sound files-Open-ended song learning in a hummingbird

description: Excel data sheet describing the sound files associated with the paper "Open-ended song learning in a hummingbird". The column "file name" provides the name of the sound files (without file extension).
DOI: 10.5061/dryad.053m3/1
title: Perlaceaspeciestree

description: xml for inferring specie tree in *BEAST using one mitochondria gene and three nuclear genes
DOI: 10.5061/dryad.053m3/2
title: perlspeciestree_nuclearonly

description: xml for inferring specie tree in *BEAST using three nuclear genes
DOI: 10.5061/dryad.053m3/3
title: model1_1

description: xml file for running species tree in *BEAST based on model 1 (assuming Euprepiophis perlacea and Euprepiophis manderinus are two independent species)
DOI: 10.5061/dryad.053m3/4
title: model2_1

description: xml file for running species tree in *BEAST based on model 2 (assuming Euprepiophis perlacea and Euprepiophis manderinus are one species)
DOI: 10.5061/dryad.053m3/5
title: m1_1pathSampling

description: xml file for calculating marginal likelihood of model 1 (Euprepiophis perlacea and Eupreophis manderinus are two species) using path-sampling estimator
DOI: 10.5061/dryad.053m3/6
title: m1_1stepstone

description: xml file for calculating marginal likelihood of model 1 (Euprepiophis perlacea and Eupreophis manderinus are two species) using stepstone estimator
DOI: 10.5061/dryad.053m3/7
title: m2_1pathSampling

description: xml file for calculating marginal likelihood of model 2 (Euprepiophis perlacea and Eupreophis manderinus are one species) using path-sampling estimator
DOI: 10.5061/dryad.053m3/8
title: m2_1stepstone

description: xml file for calculating marginal likelihood of model 2 (Euprepiophis perlacea and Eupreophis manderinus are one species) using stepstone estimator
DOI: 10.5061/dryad.16g74/1
title: DatasheetA

description: Contains pairwise predictor variables, and fledging rate response variable, for analyses presented in Table 1; Table 2; Figure 2; Supplementary Figure 1; Supplementary Table 1; Supplementary Table 2; Supplementary Table 3.  For the code used to generate Fa and ll estimates from the pedigree (DatasheetC), see Supplementary R code 1 and 2, published with the manuscript.  Under the "Site" variable: "TPB" = Top Bush, "MGR" - Mangere, "WSB" = Woolshed Bush.
DOI: 10.5061/dryad.16g74/2
title: DatasheetB

description: Contains inbreeding (F) and census (N) data per year, over three sites, used to generate Figure 1.
DOI: 10.5061/dryad.16g74/3
title: DatasheetC

description: Contains pedigree of animals included in this study, plus ll estimates for each individual, used to generate Supplementary Figure 2.  Missing data = "NA".
DOI: 10.5061/dryad.1tm84/1
title: predicting novel host use code

description: R code for analysis of host use in food web of plants and Lepidoptera herbivores.  Assessment of transferability only novel hosts.
DOI: 10.5061/dryad.416b8/1
title: Location and sampling details of field-collected butterflies

description: This file contains detailed location information and sample numbers of the six wild Bicyclus anynana populations of the study, including location names, location coordinates, sampling date, and the number of female and male samples per population.
DOI: 10.5061/dryad.5g32f94b/1
title: cahais_al.contigs.tar

description: contigs files
DOI: 10.5061/dryad.5gs75/1
title: Adhesion of male diving beetles suction cups

description: Data from adhesion measurements of male diving beetle suction cups on different surfaces. The surfaces include glass (measured both with the sensor operated by a manipulator and manually) and the elytra and pronotum of both males and two female morphs. Data comes from two species (Dytiscus lapponicus and Graphoderus zonatus) and two different locations (Östra Skivsjön and Lomtjärn). The data file includes the maximum, minimum and mean of each adhesion event, the time of the measurment, the baseline, the calibration factor used for calculations and the calculated adhesion and loading force.
DOI: 10.5061/dryad.5s07m/2
title: oaks_etal_2012_evolution.tar.gz
DOI: 10.5061/dryad.6n385/1
title: Caval-Holme_data1

description: Data file describes the adult test volumes (in log10 mm^2) and diameters (in mm) of foraminiferan species and subspecies illustrated in the Ellis and Messina catalog of Foraminifera.  Specimens were measured from paper copies of the catalog using digital calipers accurate to the nearest 0.01 mm.  Higher taxonomy was assigned as per Loeblich and Tappan (1988).  Geological age information was taken from the descriptions in the Ellis and Messina catalog.
DOI: 10.5061/dryad.7c4m8/1
title: Data set

description: Data used in the publication
DOI: 10.5061/dryad.7fq7d558/2
title: Wolbachia_wsp_QPCR_tissues
DOI: 10.5061/dryad.830d7/1
title: Datadeposited
DOI: 10.5061/dryad.868sm/30
title: ROM 61649 (Fig. 3D) – Juvenile specimen with faint trace of foot

description: Juvenile specimen, preserved sublaterally; mouthparts are visible to anterior, with dark transverse trace underneath, interpreted as anterior margin of foot.  See also wet image.
DOI: 10.5061/dryad.868sm/31
title: ROM 61649 (Fig. 3D) – Juvenile specimen with faint trace of foot (wet)

description: Juvenile specimen, preserved sublaterally; mouthparts are visible to anterior, with dark transverse trace underneath, interpreted as anterior margin of foot.  See also dry image.
DOI: 10.5061/dryad.868sm/32
title: ROM 61151 (Fig. 3G) – Mature specimen, with incipient spines, and partial scleritome exposing underlying tissue
DOI: 10.5061/dryad.868sm/33
title: ROM 62273 (Fig. 3I) – posterior portion of specimen (dorsal view), showing imbrication of ventral sclerites
DOI: 10.5061/dryad.868sm/34
title: ROM 56965 (Fig. 5A) – partially disaggregated scleritome
DOI: 10.5061/dryad.868sm/35
title: USNM 199953 (Fig. 5B) – lateral group of sclerites
DOI: 10.5061/dryad.868sm/36
title: ROM 61510 (Fig. 5C) – showing depth of scleritome
DOI: 10.5061/dryad.868sm/37
title: ROM 61510 (counterpart)

description: The plane of splitting passed close to the dorsal surface – hence the depth of sclerites on the part, and the spaces between sclerites on this counterpart.
DOI: 10.5061/dryad.b0c8470m/1
title: GroupTaxaAppendix

description: Supplementary Information
DOI: 10.5061/dryad.b0c8470m/2
title: SFig1

description: Supplementary Figure 1
DOI: 10.5061/dryad.b0c8470m/3
title: SFig2

description: Supplementary Figure 2
DOI: 10.5061/dryad.b2c80/1
title: Bioassay data describing activity of crude extracts from fruits in Central Panama

description: Measurements of fungal hyphal growth and brine shrimp survivorship in crude extracts of fruit collected from Central Panama
DOI: 10.5061/dryad.b2c80/2
title: R code for analyses
DOI: 10.5061/dryad.b2c80/3
title: R functions used in analyses
DOI: 10.5061/dryad.c2kn2k60/1
title: fitmin_Evolution_archived

description: The file is a pdf of a Mathematica (Wolfram Research: version 8) file for integrating the set of differential equations that is explored in the article
DOI: 10.5061/dryad.nb259/3
title: Sequence Counts in 36C-Salt
DOI: 10.5061/dryad.nb259/4
title: Sequence Counts in 36C+Salt
DOI: 10.5061/dryad.nd362dn7/1
title: COB_1302

description: Nexus file of all haplotypes including mtDNA COI and cytb genes, include California specimens with COI data
DOI: 10.5061/dryad.nd362dn7/2
title: COB_allwCA_1302

description: This file contains data from all individuals used in this study, including Doroneuria theodora (DT), the outgroup. It is a concatenated set of COI and cytb genes.
DOI: 10.5061/dryad.p69t1/1
title: Biodiversity conservation spending by country by source 2001-2008

description: File shows the amount allocated to biodiversity conservation by domestic and international sources, in millions of 2005 US dollars, for the period 2001-2008. File also contains numerous comments adding further information. See online material for the published article for details of how data were compiled.
DOI: 10.5061/dryad.q4f09sr3/1
title: Data

description: This file contains the data analysed in both experiments 1 and 2. Each experiment's data set has been saved in different sheets. Both sheets have a legend with the description of the contents of each column.
DOI: 10.5061/dryad.q4f09sr3/2
title: SourceCodeRarefactor

description: This file contains the explanation and the source code of the software written in C++ that was used to produce the rarefaction curves for the samplings of alleles found in a population.
DOI: 10.5061/dryad.q4f09sr3/3
title: bootstrapCritidia1
DOI: 10.5061/dryad.s4h53/5
title: Sample information

description: Samples from which Herbetella observed occurrences arose (see main text and supplementary text)
DOI: 10.5061/dryad.s4h53/6
title: Herbetella data for Single Season Model

description: Formatted data for Herbetella to be used in "single season" occupancy models
DOI: 10.5061/dryad.s4h53/7
title: Herbetella data for Multiple Season Model

description: Formatted data for Herbetella to be used in "multiple season" occupancy models
DOI: 10.5061/dryad.s4h53/8
title: Herbetella Data Tripled

description: Triplicated data for Herbetella
DOI: 10.5061/dryad.s791pg03/1
title: Kaffenberger_Gephyromantis_maxpart_alignment

description: Interleaved alignment of all genes in Nexus format, with exclusion settings and partition scheme as used in the final Bayesian analysis.
DOI: 10.5061/dryad.v2m91/1
title: richards_etal.msat_genotypes

description: Microsatellite DNA haplotype allele data generated by PCR amplification and genotyping. The following loci were genotyped as described - ev14, ff6, kwm12a, mk5, mk6, mk8, ppho130, ttr04, ttr19, ttr34, ttr48, ttr58, ttr63, txvt5, txvt7
DOI: 10.5061/dryad.v2m91/2
title: Richards_et al_MtDNA  haplotypes

description: Five unique mtDNA haplotypes found among 132 characterized bottlenose dolphin individuals. These sequences have also been deposited with GenBank under accession numbers KF366717-KF366721.
DOI: 10.5061/dryad.v2m91/3
title: richards_etal_msat_genotypes

description: Corresponding DNA microsatellite (STR - short tandem repeart) genotypes for complete T. tursiops dataset, including geographic location of collections (Lat/Long) and gender of the source individual.
DOI: 10.5061/dryad.11312674/1
title: Groupwise

description: Coalition specific data used to clarify the connection between intragroup relatedness and group size, while controlling for breeding strategy. First column contains the year, second column female ring number, third column ("median.R") is the mean median relatedness in the coalition, fourth column ("Strategy numbers") contains the coded strategies, where 1 = enduring coalition, 2 = transient coalition and 3 = brief association, the fifth column describes group size.
DOI: 10.5061/dryad.11312674/2
title: Relatives

description: The file describing the frequency of relatives in the population. First column contains the females' ring numbers, the second one the relative frequency of relatives in the population, third column = minimum age estimate, the last column (GLOBAL_CI) is the global condition index.
DOI: 10.5061/dryad.11312674/3
title: Genotypes

description: 19 loci genotypes for the 529 females genotyped for this study.
DOI: 10.5061/dryad.1q9r8/1
title: Feldheim et al. lemon shark morphological and catch data Bimini, Bahamas 1995-2012

description: The first worksheet of the excel file is entitled "explanation of data." This sheet contains a key for abbreviations and explanations of each subsequent sheet.
DOI: 10.5061/dryad.1tm84/2
title: plant_information

description: names and status of German plants in host use analysis
DOI: 10.5061/dryad.1tm84/3
title: Lepidoptera information

description: taxonomic information on Lepidoptera in host use analysis
DOI: 10.5061/dryad.1tm84/4
title: interaction data on plants and Lepidoptera in BW

description: matrix of interactions of plants and Lepidopteran herbivores
DOI: 10.5061/dryad.1tm84/5
title: plant phylogeny

description: a Newick tree readable in R package "ape".  A supertree of all plants found in Baden-Wuerttemburg, Germany.  Constructed using Phylomatic with branch lengths constrained to those recorded in Wikstrom et al 2001
DOI: 10.5061/dryad.246qg/1
title: Spike and Stimulus Timing Data
DOI: 10.5061/dryad.246qg/2
title: FullFieldFlicker

description: Full-field flicker stimuli used in experiments.  See README.txt associated with Data.zip.
DOI: 10.5061/dryad.246qg/3
title: MultiscaleCorrNoise

description: Multiscale correlated (scale-invariant) stimuli used in experiments.  See README.txt associated with Data.zip.
DOI: 10.5061/dryad.246qg/4
title: LowContrastStimuli

description: Low-contrast white noise and multiscale stimuli used in experiments.  See README.txt associated with Data.zip.