cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2gtmmk
title: CCDC 2288749: Experimental Crystal Structure Determination

description: Related Article: Christopher Golz, Anna Krawczuk|2023|Cryst.Growth Des.|23|7504|doi:10.1021/acs.cgd.3c00981
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gtmnl
title: CCDC 2288750: Experimental Crystal Structure Determination

description: Related Article: Christopher Golz, Anna Krawczuk|2023|Cryst.Growth Des.|23|7504|doi:10.1021/acs.cgd.3c00981
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gybd5
title: CCDC 2292307: Experimental Crystal Structure Determination

description: Related Article: Ju-Fen Ai, Yun-Lan Li, Zhong-Hong Zhu, Hai-Ling Wang, Juan Li, Fu-Pei Liang, Hua-Hong Zou|2023|Cryst.Growth Des.|23|7394|doi:10.1021/acs.cgd.3c00788
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.18167/dvn1/oex6qx
title: ASSET Practical Lexicon: An agroecology lexicon in Cambodia

description: The overall objective of the ASSET Project is to transform food and agricultural systems in Southeast Asia more sustainable, safer and inclusive, through harnessing the potential of Agroecology. In this context, a joint workshop ASSET-ALiSEA was organized by GRET and CIRAD in Cambodia the 24th of November 2022. An agroecology lexicon composed of 20 concepts and 261 terms was constructed in the context of this workshop. This lexicon could be used for the knowledge hub associated with the ASSET Project. This dataset contains: - A presentation that summarizes the content of this workshop and the method used to construct these agroecology lexicons - The agroecology theoretical lexicon (TL) with terms validated - The agroecology practical lexicon (PL) co-constructed in Cambodia Results: - Theoretical lexicon (TL): 16 concepts with 331 terms - 210 terms manually validated in the Workshop - Practical lexicon (PL) constructed in Cambodia: 16 concepts (+ 4 concepts associated with the farming systems) with 261 terms. 181 terms come from the theoretical lexicon.
DOI: 10.5281/zenodo.10034420
title: GamesHUB - spring 2023 experimentation about UDL
DOI: 10.5281/zenodo.10034419
title: GamesHUB - spring 2023 experimentation about UDL
DOI: 10.5281/zenodo.10031577
title: In silico study on a binding mechanism of ssDNA aptamers targeting glycosidic bond-containing small molecules

description: Files with the 5 ssDNA and their complexes with glycosidic bond-containing small molecules after docking, used in the MD simulations, along with MD simulation trajectories, are included as compressed files (.zip). 
Glycosidic bond-containing small molecules docking performed using AutoDock Vina, and MD simulations based on amber software and DNA.bsc1 force fields.
DOI: 10.5281/zenodo.10031578
title: In silico study on a binding mechanism of ssDNA aptamers targeting glycosidic bond-containing small molecules

description: Files with the 5 ssDNA and their complexes with glycosidic bond-containing small molecules after docking, used in the MD simulations, along with MD simulation trajectories, are included as compressed files (.zip). 
Glycosidic bond-containing small molecules docking performed using AutoDock Vina, and MD simulations based on amber software and DNA.bsc1 force fields.
DOI: 10.5281/zenodo.10034412
title: ERA5-Land selected indicators daily aggregates for the Latin America region, 2011

description: This deposit contains NetCDF files with daily aggregates from Copernicus Era5-Land eight selected indicators, covering the Latin America region, for 2011.
Each file represents one indicator aggregation for one month of the year. Inside each NetCDF file, the layers contain the daily aggregates.
For 2m dewpoint pressure, 10m u component of wind, 10m v component of wind, surface pressure, the mean function was used for aggregation. For total precipitation, the sum function was used for aggregation. For 2m temperature, the functions maximum, mean and minimum were used for aggregation.
Those files were created using the KrigR package.
DOI: 10.5281/zenodo.10034411
title: ERA5-Land selected indicators daily aggregates for the Latin America region, 2011

description: This deposit contains NetCDF files with daily aggregates from Copernicus Era5-Land eight selected indicators, covering the Latin America region, for 2011.
Each file represents one indicator aggregation for one month of the year. Inside each NetCDF file, the layers contain the daily aggregates.
For 2m dewpoint pressure, 10m u component of wind, 10m v component of wind, surface pressure, the mean function was used for aggregation. For total precipitation, the sum function was used for aggregation. For 2m temperature, the functions maximum, mean and minimum were used for aggregation.
Those files were created using the KrigR package.
DOI: 10.18167/dvn1/pyaxss
title: Code for computing Leaf Size, Shape and Symptoms traits from scans

description: This dataset includes the code and example files used on datasets of Eucalyptus sp. leaf scans to compute leaf size (area, length, etc.), shapes, colour, and percentage of symptoms caused by potassium deficiency. The results were used in the following article: Cornut, I., Delpierre, N., Laclau, J.P., Guillemot, J., Nouvellon, Y., Campoe, O., Stape, J.L., Fernanda Santos, V., le Maire, G. (2022). Potassium-limitation of forest productivity, part 1: A mechanistic model simulating the effects of potassium availability on canopy carbon and water fluxes in tropical eucalypt stands. EGUsphere, 2022, 1-37 A complete description of the code input-output and instructions are given in the main code "Main_leaf_size_symptoms‧m" This source code uses Matlab software and a Windows operating system
DOI: 10.5281/zenodo.10029982
title: Developing small Cas9 hybrids using molecular modeling

description: The RNA-guided CRISPR-Cas9 from Streptococcus pyogenes is the best characterized enzyme for gene editing. Its large size, however, precludes it from being packaged together with its single guide (sg)RNA into a single adeno-associated virus, limiting in vivo applications. Here, we developed smaller Cas9 hybrids, made of the PAM interacting domain (PID) of S pyogenes and the catalytic domains of the smaller Cas9 orthologues, as well as sgRNA cognate hybrids. Molecular modeling revealed that the presence of a sgRNA stabilizes Cas9. Making the D10A mutation to turn Cas9 into a nickase dramatically alters its binding energy to the sgRNA, showing that the approach can identify functionally relevant changes. However, we found that the four Cas9/sgRNA hybrid pairs tested in human cells failed to edit target sequences. We conclude that in silico approaches can identify functional changes caused by point mutations but they may not be well suited for designing Cas9/sgRNA hybrids.
DOI: 10.5281/zenodo.10029983
title: Developing small Cas9 hybrids using molecular modeling

description: The RNA-guided CRISPR-Cas9 from Streptococcus pyogenes is the best characterized enzyme for gene editing. Its large size, however, precludes it from being packaged together with its single guide (sg)RNA into a single adeno-associated virus, limiting in vivo applications. Here, we developed smaller Cas9 hybrids, made of the PAM interacting domain (PID) of S pyogenes and the catalytic domains of the smaller Cas9 orthologues, as well as sgRNA cognate hybrids. Molecular modeling revealed that the presence of a sgRNA stabilizes Cas9. Making the D10A mutation to turn Cas9 into a nickase dramatically alters its binding energy to the sgRNA, showing that the approach can identify functionally relevant changes. However, we found that the four Cas9/sgRNA hybrid pairs tested in human cells failed to edit target sequences. We conclude that in silico approaches can identify functional changes caused by point mutations but they may not be well suited for designing Cas9/sgRNA hybrids.
DOI: 10.5281/zenodo.10034387
title: Dataset related to article "Important functional role of the protein osteopontin in the progression of malignant pleural mesothelioma"

description: This record contains raw data related to article "Important functional role of the protein osteopontin in the progression of malignant pleural mesothelioma"
Background: Malignant Pleural Mesothelioma (MPM) is an aggressive cancer of the mesothelial lining associated with exposure to airborne non-degradable asbestos fibers. Its poor response to currently available treatments prompted us to explore the biological mechanisms involved in its progression. MPM is characterized by chronic non-resolving inflammation; in this study we investigated which inflammatory mediators are mostly expressed in biological tumor samples from MPM patients, with a focus on inflammatory cytokines, chemokines and matrix components.
Methods: Expression and quantification of Osteopontin (OPN) was detected in tumor and plasma samples of MPM patients by mRNA, immunohistochemistry and ELISA. The functional role of OPN was investigated in mouse MPM cell lines in vivo using an orthotopic syngeneic mouse model.
Results: In patients with MPM, the protein OPN was significantly more expressed in tumors than in normal pleural tissues and predominantly produced by mesothelioma cells; plasma levels were elevated in patients and associated with poor prognosis. However, modulation of OPN levels was not significantly different in a series of 18 MPM patients receiving immunotherapy with durvalumab alone or with pembrolizumab in combination with chemotherapy, some of whom achieved a partial clinical response. Two established murine mesothelioma cell lines: AB1 and AB22 of sarcomatoid and epithelioid histology, respectively, spontaneously produced high levels of OPN. Silencing of the OPN gene (Spp1) dramatically inhibited tumor growth in vivo in an orthotopic model, indicating that OPN has an important promoting role in the proliferation of MPM cells. Treatment of mice with anti-CD44 mAb, blocking a major OPN receptor, significantly reduced tumor growth in vivo.
Conclusion: These results demonstrate that OPN is an endogenous growth factor for mesothelial cells and inhibition of its signaling may be helpful to restrain tumor progression in vivo. These findings have translational potential to improve the therapeutic response of human MPM.
DOI: 10.5281/zenodo.10034388
title: Dataset related to article "Important functional role of the protein osteopontin in the progression of malignant pleural mesothelioma"

description: This record contains raw data related to article "Important functional role of the protein osteopontin in the progression of malignant pleural mesothelioma"
Background: Malignant Pleural Mesothelioma (MPM) is an aggressive cancer of the mesothelial lining associated with exposure to airborne non-degradable asbestos fibers. Its poor response to currently available treatments prompted us to explore the biological mechanisms involved in its progression. MPM is characterized by chronic non-resolving inflammation; in this study we investigated which inflammatory mediators are mostly expressed in biological tumor samples from MPM patients, with a focus on inflammatory cytokines, chemokines and matrix components.
Methods: Expression and quantification of Osteopontin (OPN) was detected in tumor and plasma samples of MPM patients by mRNA, immunohistochemistry and ELISA. The functional role of OPN was investigated in mouse MPM cell lines in vivo using an orthotopic syngeneic mouse model.
Results: In patients with MPM, the protein OPN was significantly more expressed in tumors than in normal pleural tissues and predominantly produced by mesothelioma cells; plasma levels were elevated in patients and associated with poor prognosis. However, modulation of OPN levels was not significantly different in a series of 18 MPM patients receiving immunotherapy with durvalumab alone or with pembrolizumab in combination with chemotherapy, some of whom achieved a partial clinical response. Two established murine mesothelioma cell lines: AB1 and AB22 of sarcomatoid and epithelioid histology, respectively, spontaneously produced high levels of OPN. Silencing of the OPN gene (Spp1) dramatically inhibited tumor growth in vivo in an orthotopic model, indicating that OPN has an important promoting role in the proliferation of MPM cells. Treatment of mice with anti-CD44 mAb, blocking a major OPN receptor, significantly reduced tumor growth in vivo.
Conclusion: These results demonstrate that OPN is an endogenous growth factor for mesothelial cells and inhibition of its signaling may be helpful to restrain tumor progression in vivo. These findings have translational potential to improve the therapeutic response of human MPM.
DOI: 10.5281/zenodo.8274541
title: Dataset from : "Automatic extraction of former WWI battlefields from ancient maps"

description: The folder contains 3 shapefiles usable in GIS (geographic information system). These data result from the processing of the french map of devastated regions ("carte des régions dévastées"). The map was edited in 1920 by the geographic service of French army. The objective was to classify lands depending on the intensity of destruction, and to locate areas where substantial restoration work was necessary. The 47 map sheets of the collection at scale 1:50,000 have been scanned and can be obtained from the National Geographic Institute (IGN) in .jpg format. The map shows large red-colored zones representing heavily damaged front-line area by trenches and bombing according to the map legend. There are also red-hatched features locating destroyed cities, roads and destroyed or cut forests. The blue-colored symbols show new constructions, such as memorials and cemeteries. For the methodology of georeferencing, classification and vectorization, see Nelly Paradelle, Marianne Laslier, Guillaume DeCocq, "Automatic extraction of former WWI battlefields from ancient maps," Proc. SPIE 12727, Remote Sensing for Agriculture, Ecosystems, and Hydrology XXV, 127270H (17 October 2023); https://doi.org/10.1117/12.2684009
-MANUAL_ENVELOPE.shp : This dataset contains the envelope bordering the local destructions from the dataset "RED POLYGONS", and drawn manually within QGIS.
-RED_POLYGONS.shp : This dataset contains only polygons of local destructions (cities, roads, buildings, destroyed or cut forests etc.) extracted from the map of devastated regions
-RED_ZONE.shp : This dataset contains only polygons of the large red-colored areas representing heavily damaged front-line area by trenches and bombing extracted from the map of devastated regions
Files with extension .qmd provide metadata.
DOI: 10.5281/zenodo.10034442
title: ERA5-Land selected indicators daily aggregates for the Latin America region, 2012

description: This deposit contains NetCDF files with daily aggregates from Copernicus Era5-Land eight selected indicators, covering the Latin America region, for 2012.
Each file represents one indicator aggregation for one month of the year. Inside each NetCDF file, the layers contain the daily aggregates.
For 2m dewpoint pressure, 10m u component of wind, 10m v component of wind, surface pressure, the mean function was used for aggregation. For total precipitation, the sum function was used for aggregation. For 2m temperature, the functions maximum, mean and minimum were used for aggregation.
Those files were created using the KrigR package.
DOI: 10.5281/zenodo.8274540
title: Dataset from : "Automatic extraction of former WWI battlefields from ancient maps"

description: The folder contains 3 shapefiles usable in GIS (geographic information system). These data result from the processing of the french map of devastated regions ("carte des régions dévastées"). The map was edited in 1920 by the geographic service of French army. The objective was to classify lands depending on the intensity of destruction, and to locate areas where substantial restoration work was necessary. The 47 map sheets of the collection at scale 1:50,000 have been scanned and can be obtained from the National Geographic Institute (IGN) in .jpg format. The map shows large red-colored zones representing heavily damaged front-line area by trenches and bombing according to the map legend. There are also red-hatched features locating destroyed cities, roads and destroyed or cut forests. The blue-colored symbols show new constructions, such as memorials and cemeteries. For the methodology of georeferencing, classification and vectorization, see Nelly Paradelle, Marianne Laslier, Guillaume DeCocq, "Automatic extraction of former WWI battlefields from ancient maps," Proc. SPIE 12727, Remote Sensing for Agriculture, Ecosystems, and Hydrology XXV, 127270H (17 October 2023); https://doi.org/10.1117/12.2684009
-MANUAL_ENVELOPE.shp : This dataset contains the envelope bordering the local destructions from the dataset "RED POLYGONS", and drawn manually within QGIS.
-RED_POLYGONS.shp : This dataset contains only polygons of local destructions (cities, roads, buildings, destroyed or cut forests etc.) extracted from the map of devastated regions
-RED_ZONE.shp : This dataset contains only polygons of the large red-colored areas representing heavily damaged front-line area by trenches and bombing extracted from the map of devastated regions
Files with extension .qmd provide metadata.
DOI: 10.5281/zenodo.10034443
title: ERA5-Land selected indicators daily aggregates for the Latin America region, 2012

description: This deposit contains NetCDF files with daily aggregates from Copernicus Era5-Land eight selected indicators, covering the Latin America region, for 2012.
Each file represents one indicator aggregation for one month of the year. Inside each NetCDF file, the layers contain the daily aggregates.
For 2m dewpoint pressure, 10m u component of wind, 10m v component of wind, surface pressure, the mean function was used for aggregation. For total precipitation, the sum function was used for aggregation. For 2m temperature, the functions maximum, mean and minimum were used for aggregation.
Those files were created using the KrigR package.
DOI: 10.5281/zenodo.10034308
title: Effect of ultraviolet on the environmental adaptability of Megalurothrips usitatus
DOI: 10.5281/zenodo.10034309
title: Effect of ultraviolet on the environmental adaptability of Megalurothrips usitatus
DOI: 10.5281/zenodo.10003312
title: Eye Tracking in Robot Control Tasks

description: This table is part of a systematic review. It contains current work of researchers around the world, who work in the field of eye tracking control for robotic arms. These controls are used for assistive robotics, aiding physically impaired people in everyday life and in shared workspaces.
This data set can also be found on git: https://github.com/AnkeLinus/EyeTrackingInRobotControlTasks.git 
If you use this table in other publications please cite as stated in the git repository. Also keep an eye open for updates.
DOI: 10.5281/zenodo.10003313
title: Eye Tracking in Robot Control tasks

description: This table is part of a systematic review. It contains current work of researchers around the world, who work in the field of eye tracking control for robotic arms. These controls are used for assistive robotics, aiding physically impaired people in everyday life and in shared workspaces.
This data set can also be found on git: https://github.com/AnkeLinus/EyeTrackingInRobotControlTasks.git 
If you use this table in other publications please cite as stated in the git repository. Also keep an eye open for updates.
DOI: 10.5281/zenodo.10034480
title: Eye Tracking in Robot Control Tasks

description: This table is part of a systematic review. It contains current work of researchers around the world, who work in the field of eye tracking control for robotic arms. These controls are used for assistive robotics, aiding physically impaired people in everyday life and in shared workspaces.
This data set can also be found on git: https://github.com/AnkeLinus/EyeTrackingInRobotControlTasks.git 
If you use this table in other publications please cite as stated in the git repository. Also keep an eye open for updates.
DOI: 10.18167/dvn1/nga1ji
title: News dealing with 'Xylella fastidiosa' collected with PADI-web

description: Due to the increasing number of new and reemerging pests resulting from intensification, globalisation and climate change, monitoring of plant health is crucial. In this context, the PADI-web pipeline was implemented for plant disease surveillance. This dataset presents data collected from PADI-web dealing with Xylella fastidiosa (period: 01/01/2021 - 31/12/2022). Extraction done the 4th of January 2023: (1) 157 relevant news: relevant_articles_Xylella_Fastidiosa_04012023.json; (2) Relevant events based on locations extracted in these relevant news: relevant_all_location_extracted_information_Xylella_Fastidiosa_04012023.json; (3) 648 news (relevant and irrelevant): all_articles_Xylella_Fastidiosa_04012023.json
DOI: 10.6084/m9.figshare.24082185
title: Application of the information theory to the Kelvin-Helmholtz instability

description: This package includes all Data used for the Figures in the Paper. which is saved as Matlab save files. The Matlab visualization tools are also provided in this package.
DOI: 10.6084/m9.figshare.24082185.v1
title: Application of the information theory to the Kelvin-Helmholtz instability

description: This package includes all Data used for the Figures in the Paper. which is saved as Matlab save files. The Matlab visualization tools are also provided in this package.
DOI: 10.5281/zenodo.10034494
title: ERA5-Land selected indicators daily aggregates for the Latin America region, 2013

description: This deposit contains NetCDF files with daily aggregates from Copernicus Era5-Land eight selected indicators, covering the Latin America region, for 2013.
Each file represents one indicator aggregation for one month of the year. Inside each NetCDF file, the layers contain the daily aggregates.
For 2m dewpoint pressure, 10m u component of wind, 10m v component of wind, surface pressure, the mean function was used for aggregation. For total precipitation, the sum function was used for aggregation. For 2m temperature, the functions maximum, mean and minimum were used for aggregation.
Those files were created using the KrigR package.
DOI: 10.5281/zenodo.10034493
title: ERA5-Land selected indicators daily aggregates for the Latin America region, 2013

description: This deposit contains NetCDF files with daily aggregates from Copernicus Era5-Land eight selected indicators, covering the Latin America region, for 2013.
Each file represents one indicator aggregation for one month of the year. Inside each NetCDF file, the layers contain the daily aggregates.
For 2m dewpoint pressure, 10m u component of wind, 10m v component of wind, surface pressure, the mean function was used for aggregation. For total precipitation, the sum function was used for aggregation. For 2m temperature, the functions maximum, mean and minimum were used for aggregation.
Those files were created using the KrigR package.