cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc28r2sx
title: CCDC 2107559: Experimental Crystal Structure Determination

description: Related Article: Soumen Singha, Bhaskar Khanra, Somen Goswami, Rituparna Mondal, Rajkumar Jana, Arka Dey, Sanjoy Kumar Dey, Partha Pratim Ray, Corrado Rizzoli, Rajat Saha, Sanjay Kumar|2021|New J.Chem.|45|20596|doi:10.1039/D1NJ04237H
DOI: 10.35111/j2xe-rr02
title: BOLT Egyptian Arabic PropBank and Sense -- Discussion Forum, SMS/Chat, and Conversational Telephone Speech

description: <h3>Introduction</h3><br>
<p>BOLT Egyptian Arabic PropBank and Sense -- Discussion Forum, SMS/Chat, and Conversational Telephone Speech was developed by the <a href="https://www.colorado.edu/lab/clear/">University of Colorado Boulder - CLEAR (Computational Language and Education Research)</a> and consists of propbank annotation on Egyptian Arabic discussion forum (DF), SMS/Chat and conversational telephone speech (CTS) data.</p><br>
<p>The DARPA <a href="https://www.ldc.upenn.edu/collaborations/current-projects/bolt">BOLT</a> (Broad Operational Language Translation) program developed machine translation and information retrieval for less formal genres, focusing particularly on user-generated content. LDC supported the BOLT program by collecting informal data sources -- discussion forums, text messaging and chat -- in Chinese, Egyptian Arabic and English. The collected data was translated and annotated for various tasks including word alignment, treebanking, propbanking and co-reference.</p><br>
<h3>Data</h3><br>
<p>DF data was collected from the web using a manual process. SMS/Chat material was donated or collected via live platforms. CTS data was taken from LDC's Egyptian Arabic CALLHOME and CALLFRIEND telephone collections.</p><br>
<p>Propbank annotation provides a layer of semantic annotation over treebank. In this release, it was applied to BOLT phrase structure treebank annotation and was carried out in two phases: (1) a frame file for each predicate was created, and (2) the predicate argument structure was annotated using the frame file as a reference.</p><br>
<p>Annotation files are presented as UTF-8 encoded and are in either plain text or XML formats.</p><br>
<h3>Sponsorship</h3><br>
<p>This material is based upon work supported by the Defense Advanced Research Projects Agency (DARPA) under Contract No. HR0011-11-C-0145. The content does not necessarily reflect the position or the policy of the Government, and no official endorsement should be inferred.</p><br>
<h3>Samples</h3><br>
<p>Please view this <a href="desc/addenda/LDC2021T18.prop.txt">PropBank sample (TXT)</a> and <a href="desc/addenda/LDC2021T18.frame.xml">frame sample (XML)</a>.</p><br>
<h3>Updates</h3><br>
<p>None at this time.</p></br>
Portions © 1996, 1997, 2002, 2012-2017, 2019, 2021 Trustees of the University of Pennsylvania
DOI: 10.35111/b2yg-bz44
title: Second DIHARD Challenge Development - SEEDLingS

description: <h3>Introduction</h3><br>
<p>Second DIHARD Challenge Development - SEEDLinGS was developed by Duke University and LDC and contains approximately two hours of English child language recordings along with corresponding annotations used in support of the <a href="https://dihardchallenge.github.io/dihard2">Second DIHARD Challenge</a>.</p><br>
<p>This release, when combined with Second DIHARD Challenge Development - Eleven Sources (LDC2021S10), contains the development set audio data and annotation, except for CHiME-5 audio files, which must be obtained from the <a href="https://licensing.sheffield.ac.uk/product/chime5">University of Sheffield</a>.</p><br>
<p>The DIHARD Challenges are a set of shared tasks on diarization focusing on "hard" diarization; that is, speech diarization for challenging corpora where there was an expectation that existing state-of-the-art systems would fare poorly. As with the <a href="https://dihardchallenge.github.io/dihard1/">first challenge</a>, the second development and evaluation sets were drawn from a diverse sampling of sources including monologues, map task dialogues, broadcast interviews, sociolinguistic interviews, meeting speech, speech in restaurants, clinical recordings, extended child language acquisition recordings, and YouTube videos.</p><br>
<h3>Data</h3><br>
<p>Source data is from the <a href="https://homebank.talkbank.org/access/Password/Bergelson.html">SEEDLingS</a> (The Study of Environmental Effects on Developing Linguistic Skills) corpus, designed to investigate how infants' early linguistic and environmental input plays a role in their learning. Recordings were generated in the home environment of infants in the Rochester, New York area. A subset of that data was annotated by LDC for use in the First and Second DIHARD Challenges.</p><br>
<p>The data in this release consists of files provided in the Second DIHARD Challenge as well as subsequently updated annotated files not provided to second challenge participants.</p><br>
<p>All audio is provided in the form of 16 kHz, 16-bit, mono-channel FLAC files. The diarization for each recording is stored as a NIST Rich Transcription Time Marked (RTTM) file. RTTM files are space-separated text files containing one turn per line. Segmentation files are stored as HTK label files. Each of these files contains one speech segment per line. Scoring regions for each recording are specific by un-partitioned evaluation map (UEM) files. All annotation file types are encoded as UTF-8. More information about the file formats and data sources and domains are in the included documentation.</p><br>
<h3>Updates</h3><br>
<p>None at this time.</p></br>
Portions © 2019, 2021 Duke University, © 2019, 2021 Trustees of the University of Pennsylvania
DOI: 10.25345/c5786q
title: MassIVE MSV000088383 - SCP4-STK35/PDIK1L complex is a dual phospho-catalytic signaling dependency in acute myeloid leukemia
title: Acute myeloid leukemia (AML) cells rely on phospho-signaling pathways to gain unlimited proliferation potential. Here, we used domain-focused CRISPR screening to identify the nuclear phosphatase SCP4 as a dependency in AML, yet this enzyme is dispensable in normal hematopoietic progenitor cells. Using CRISPR exon scanning and gene complementation assays, we show that the catalytic function of SCP4 is essential in AML. Through mass spectrometry analysis of affinity-purified complexes, we identify the kinase paralogs STK35 and PDIK1L as binding partners and substrates of the SCP4 phosphatase domain. We show that STK35 and PDIK1L function catalytically and redundantly in the same pathway as SCP4 to maintain AML proliferation and to support amino acid biosynthesis and transport. We provide evidence that SCP4 regulates STK35/PDIK1L through two distinct mechanisms: catalytic removal of inhibitory phosphorylation and by promoting kinase stability. Our findings reveal a phosphatase-kinase signaling complex that supports the pathogenesis of AML.
DOI: 10.5066/f7wh2nz1
title: Yale stocks and flows database (YSTAFDB) describing anthropogenic materials cycles, recycling, and criticality for 102 materials on spatial scales ranging from suburbs to global and timescales from the early 1800s to circa 2017

description: This data release presents the Yale stocks and flows database (YSTAFDB). Its data describe the use of 102 materials from the early 1800s to circa 2017 through anthropogenic cycles, their recycling and criticality properties, and on spatial scales ranging from suburbs to global. This data collection was previously scattered across multiple non-uniformly formatted files such as journal papers, reports, and unpublished spreadsheets. These data have been synthesized into YSTAFDB, which is presented as individual comma-separated text files and also in MySQL and PostgreSQL database formats. Consolidation of these data into a single database can increase their accessibility and reusability, which is relevant to diverse stakeholders ranging from researchers in sustainability science to government employees involved in national emergency planning.
DOI: 10.6084/m9.figshare.16624595
title: Estimation and Selection for High-Order Markov Chains with Bayesian Mixture Transition Distribution Models

description: We develop a mixture model and diagnostic for Bayesian estimation and selection in high-order, discrete-state Markov chains. Both extend the mixture transition distribution, which constructs a transition probability tensor by aggregating probabilities from a set of single-lag transition matrices, through inclusion of mixture components dependent on multiple lags. We demonstrate two uses for the proposed model: identification of relevant lags through over-specification and shrinkage via priors for sparse probability vectors, and parsimonious approximation of multi-lag dynamics by mixing low-order transition models. The diagnostic yields a general and interpretable mixture decomposition for transition probability tensors estimated by any means. We demonstrate the utility of the model and diagnostic with simulation studies, and further apply the methodology to a data analysis from the high-order Markov chain literature, and to a time series of pink salmon abundance in Alaska, United States. Supplemental files for this article are available online.
DOI: 10.6084/m9.figshare.16624595.v2
title: Estimation and Selection for High-Order Markov Chains with Bayesian Mixture Transition Distribution Models

description: We develop a mixture model and diagnostic for Bayesian estimation and selection in high-order, discrete-state Markov chains. Both extend the mixture transition distribution, which constructs a transition probability tensor by aggregating probabilities from a set of single-lag transition matrices, through inclusion of mixture components dependent on multiple lags. We demonstrate two uses for the proposed model: identification of relevant lags through over-specification and shrinkage via priors for sparse probability vectors, and parsimonious approximation of multi-lag dynamics by mixing low-order transition models. The diagnostic yields a general and interpretable mixture decomposition for transition probability tensors estimated by any means. We demonstrate the utility of the model and diagnostic with simulation studies, and further apply the methodology to a data analysis from the high-order Markov chain literature, and to a time series of pink salmon abundance in Alaska, United States. Supplemental files for this article are available online.
DOI: 10.6084/m9.figshare.14442728
title: Raw Data and Associated Calculations for PFHxA and PFOS:PFHxA Residues

description: All raw and associated data for the quantification and analyses of PFHxA and PFOS residues from chronically orally exposed Northern Bobwhite Quail.
DOI: 10.6084/m9.figshare.14442728.v1
title: Raw Data and Associated Calculations for PFHxA and PFOS:PFHxA Residues

description: All raw and associated data for the quantification and analyses of PFHxA and PFOS residues from chronically orally exposed Northern Bobwhite Quail.
DOI: 10.5519/qd.io317x7g
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.25345/c53k3f
title: MassIVE MSV000088384 - Secretome Comparison of Mesenchymal Stromal Cells and Immature Osteoblasts
title: Osteoblasts are a key component of the endosteal hematopoietic stem cell (HSC) niche and have long been recognized with strong hematopoietic supporting activity. Osteoblast conditioned media (OCM) enhances the growth of hematopoietic progenitors in culture and modulate their engraftment activity. We aimed to characterize the hematopoietic supporting activity of OCM by comparing the secretome of immature osteoblasts to that of their precursor, mesenchymal stromal cells (MSC). Over 300 secreted proteins were quantified by mass spectroscopy in media conditioned with MSC or osteoblasts, with 47 being differentially expressed.
DOI: 10.5519/qd.6vhrfhcd
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (4896 records)
DOI: 10.5066/p9aqh027
title: Water Availability Tool for Environmental Resources for the Commonwealth of Kentucky updated for 2019

description: In 2009, the Kentucky Water Science Center completed the Water Availability Tool for Environmental Resources (WATER-KY), which provided the ability to simulate streamflow for the period 1980-2000. This model integrated TOPMODEL (Beven and Kirkby, 1979) for pervious portions of the landscape with simulation of flow generated from impervious surfaces (USDA, 1986). Associated products included a flow-duration curve, load-duration curves when water-quality data were available, and general water balance. WATER-KY required a dedicated ArcGIS license with the Spatial Analyst extension, which made it difficult to use for some cooperators and limited integration with other hydrologic approaches. This new version translates the abilities of WATER to a format that can be used without proprietary software or local updating of software. Additional functionality has also been added to include hydrologic response units (HRUs) that are defined based on three fundamental land-use categories: forest, agricultural land, and developed areas, based on subsequent development of WATER for the Delaware Basin (Williamson and others, 2015). Beven, K.J., and Kirkby, M.J., 1979, A physically based, variable contributing area model of basin hydrology / Un modele a base physique de zone d'appel variable de l'hydrologie du bassin versant: Hydrological Sciences Bulletin v. 24, p. 43-69, http://dx.doi.org/10.1080/02626667909491834. U.S. Department of Agriculture [USDA], 1986, Urban hydrology for small watersheds: Natural Resources Conservation Service, Conservation Engineering Division, Technical Release 55, Revised June 1986, Update of Appendix A January 1999, https://www.nrcs.usda.gov/Internet/FSE_DOCUMENTS/stelprdb1044171.pdf. Williamson, T.N., Lant, J.G., Claggett, P.R., Nystrom, E.A., Milly, P.C.D., Nelson, H.L., Hoffman, S.A., Colarullo, S.J., and Fischer, J.M., 2015, Summary of hydrologic modeling for the Delaware River Basin using the Water Availability Tool for Environmental Resources (WATER): U.S. Geological Survey Scientific Investigations Report 2015-5143, 68 p., http://dx.doi.org/10.3133/sir20155143.
DOI: 10.5519/qd.7hhl4hbv
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (9792 records)
DOI: 10.6073/pasta/5e093198ba2645885d2383a68d5b9b2e
title: Wildflower survey data from French Broad River Basin, North Carolina, 2014

description: This dataset includes measures of the abundance of blooming wildflowers from field surveys conducted in the French Broad River Basin in western North Carolina, USA. This basin is in the Southern Appalachian Mountains. Data were collected to examine the spatial and seasonal supply of biodiversity-based cultural ecosystem services (CES), in this case, nature study by viewing wildflowers. The data includes blooming species observed at 69 sites on public and private lands during the period 2014-04-01 to 2014-08-08. Flower species were characterized as charismatic if represented in tourism websites. Environmental data for 56 sites are provided: elevation, early season precipitation, mean summer temperature, land cover diversity, tree cover, vegetation structural diversity, vegetation annual productivity, and building density at local and landscape scales. Graves et al. (2017, doi: 10.1007/s10980-016-0452-0) used these data to analyze seasonal shifts in supply of floral resources and how those shifts impacted public access to projected resource hotspots. Relationships between landscape gradients, biodiversity, and ecosystem service supply varied seasonally, and the analysis identified CES hotspots otherwise obscured by simple proxies. Landscape models of biodiversity-based cultural ecosystem services should include seasonal dynamics of biotic communities to avoid under- or over-emphasizing the importance of specific locations in ecosystem service assessments.
DOI: 10.5281/zenodo.5703254
title: Sero-epidemiological Cross-sectional investigation on COVID-19 virus infection in Georgia

description: Results of population-based age stratified seroepidemiological investigation in Georgia
DOI: 10.5281/zenodo.5703253
title: Sero-epidemiological Cross-sectional investigation on COVID-19 virus infection in Georgia

description: Results of population-based age stratified seroepidemiological investigation in Georgia
DOI: 10.6084/m9.figshare.17014319
title: Figure3.xlsx

description: Single-frequency impedance transients (unprocessed raw data over time)
DOI: 10.6084/m9.figshare.17014319.v1
title: Figure3.xlsx

description: Single-frequency impedance transients (unprocessed raw data over time)
DOI: 10.6084/m9.figshare.17014322.v1
title: Figure4.xlsx

description: intensity-modulated photocurrent spectroscopy (IMPS, measured raw data and fitted time constant)
DOI: 10.6084/m9.figshare.17014322
title: Figure4.xlsx

description: intensity-modulated photocurrent spectroscopy (IMPS, measured raw data and fitted time constant)
DOI: 10.6084/m9.figshare.17014325
title: Figure1.xlsx

description: unprocessed impedance data
DOI: 10.6084/m9.figshare.17014325.v1
title: Figure1.xlsx

description: unprocessed impedance data
DOI: 10.6084/m9.figshare.17014328
title: Figure2.xlsx

description: temperature dependent conductivity (fits of data from Figure1.xlsx)
DOI: 10.25573/serc.16416684
title: Dataset: Sedimentary organic carbon measurements in a restored coastal wetland in San Francisco Bay, CA, USA

description: This project aims to investigate physical sedimentary and organic carbon (OC) characteristics of a recently restored (~11 years) wetland in San Francisco Bay to understand 1) the transition in soil properties immediately following restoration, 2) assess the return to functionality (i.e. has the wetland reached a new equilibrium, or remains in a transition phase), and 3) compare mass accumulation rates and OC burial pre- and post-restoration. This dataset contains results from 3 cores collected in 2018 from different habitat types in the wetland: mudflat (ELM1812-MFA1) cordgrass-dominated (ELM1812-SPA2), and pickleweed-dominated (ELM1812-PWA1). The data include bulk density, total organic matter (%TOM), organic carbon (%OC), nitrogen (%N), and sediment grain size (%Sand, %Silt, and %Clay). Sediment ages were determined from 210Pb data, modeled using the PLUM approach with the modeled ages verified using 137Cs data. All data was measured in 1-cm intervals for the full depth of each core, with core depths ranging from 30-35 cm.
DOI: 10.25573/serc.16416684.v2
title: Dataset: Sedimentary organic carbon measurements in a restored coastal wetland in San Francisco Bay, CA, USA

description: This project aims to investigate physical sedimentary and organic carbon (OC) characteristics of a recently restored (~11 years) wetland in San Francisco Bay to understand 1) the transition in soil properties immediately following restoration, 2) assess the return to functionality (i.e. has the wetland reached a new equilibrium, or remains in a transition phase), and 3) compare mass accumulation rates and OC burial pre- and post-restoration. This dataset contains results from 3 cores collected in 2018 from different habitat types in the wetland: mudflat (ELM1812-MFA1) cordgrass-dominated (ELM1812-SPA2), and pickleweed-dominated (ELM1812-PWA1). The data include bulk density, total organic matter (%TOM), organic carbon (%OC), nitrogen (%N), and sediment grain size (%Sand, %Silt, and %Clay). Sediment ages were determined from 210Pb data, modeled using the PLUM approach with the modeled ages verified using 137Cs data. All data was measured in 1-cm intervals for the full depth of each core, with core depths ranging from 30-35 cm.
DOI: 10.25573/serc.16416684.v1
title: Dataset: Sedimentary organic carbon measurements in a restored coastal wetland in San Francisco Bay, CA, USA

description: This project aims to investigate physical sedimentary and organic carbon (OC) characteristics of a recently restored (~11 years) wetland in San Francisco Bay to understand 1) the transition in soil properties immediately following restoration, 2) assess the return to functionality (i.e. has the wetland reached a new equilibrium, or remains in a transition phase), and 3) compare mass accumulation rates and OC burial pre- and post-restoration. This dataset contains results from 3 cores collected in 2018 from different habitat types in the wetland: mudflat (ELM1812-MFA1) cordgrass-dominated (ELM1812-SPA2), and pickleweed-dominated (ELM1812-PWA1). The data include bulk density, total organic matter (%TOM), organic carbon (%OC), nitrogen (%N), and sediment grain size (%Sand, %Silt, and %Clay). Sediment ages were determined from 210Pb data, modeled using the PLUM approach with the modeled ages verified using 137Cs data. All data was measured in 1-cm intervals for the full depth of each core, with core depths ranging from 30-35 cm.
DOI: 10.5517/ccdc.csd.cc232q97
title: CCDC 1939028: Experimental Crystal Structure Determination

description: Related Article: Qing Lang, Qian Wang, Qiuhan Lin, Yuangang Xu, Ming Lu|2021|New J.Chem.|45|20542|doi:10.1039/D1NJ04188F
DOI: 10.5517/ccdc.csd.cc28slxl
title: CCDC 2109020: Experimental Crystal Structure Determination

description: Related Article: Muhammad Asad, Shan Wang, Qian-You Wang, Lin-Ke Li, Muhammad Imran Anwar, Ayesha Younas, Shuang-Quan Zang|2021|New J.Chem.|45|20887|doi:10.1039/D1NJ04413C
DOI: 10.5517/ccdc.csd.cc28s8v6
title: CCDC 2108708: Experimental Crystal Structure Determination

description: Related Article: Yao Liu, Yu-Kong Li, Ting-Ting Ying, Yu-Hui Tan, Yun-Zhi Tang, Ding-Chong Han, Peng-kang Du, Hao Zhang|2021|New J.Chem.|45|20721|doi:10.1039/D1NJ04448F
DOI: 10.5517/ccdc.csd.cc231gvh
title: CCDC 1937836: Experimental Crystal Structure Determination

description: Related Article: Qing Lang, Qian Wang, Qiuhan Lin, Yuangang Xu, Ming Lu|2021|New J.Chem.|45|20542|doi:10.1039/D1NJ04188F
DOI: 10.5281/zenodo.5702773
title: Verkehrsperspektiven 2050: VISUM-Versionen (Strassenverkehr & ÖV), DTV, Szenario BASIS 2040/2050

description: Transport model versions in the transport planning software VISUM containing road and public transport volumes on networks of the average daily traffic (monday-sunday, so called DTV, only Scenario BASIS available).
DOI: 10.5281/zenodo.5675679
title: Verkehrsperspektiven 2050: VISUM-Versionen (Strassenverkehr), DWV, Szenario BASIS 2030/2040/2050

description: Transport model versions in the transport planning software VISUM containing road transport volumes on networks of the average workday traffic (monday-friday, so called DWV, Scenario BASIS).
DOI: 10.5281/zenodo.5702795
title: Verkehrsperspektiven 2050: VISUM-Versionen (Strassenverkehr), DWV, Szenario WWB 2030/2040/2050

description: Transport model versions in the transport planning software VISUM containing road transport volumes on networks of the average workday traffic (monday-friday, so called DWV, Scenario WWB).
DOI: 10.5281/zenodo.5683981
title: Verkehrsperspektiven 2050: VISUM-Versionen (ÖV), DWV, Szenarien BASIS und WWB 2030/2040/2050

description: Transport model versions in the transport planning software VISUM containing road and public transport volumes on networks of the average workday traffic (monday-friday, so called DWV, Scenarios WWB and BASIS).
DOI: 10.15151/esrf-es-625014166
title: Structural Biology at EMBL Grenoble, IBS-CIBB and IAB

description: The proposals covers a broad range of structural biology projects related to pathogen biology, host-pathogen interactions, RNA biology and structure-based drug development that are carried out by PIs at EMBL Grenoble, IBS-CIBB and IAB. The proposers have long-standing experience in the use, as well as the development of beam lines for macromolecular crystallography and have participated in successive BAG applications over the years, mostly at the ESRF but also at other synchrotrons (e.g. Soleil, Petra III, Diamond, SLS).