cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/3m4-vyq-j2h
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e5x-dg0-0eq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pav-0rj-8gc
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rrx-twy-s9l
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/avy-cnl-43s
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zpg-6az-fej
title: Pocillopora verrucosa (Ellis & Solander, 1786)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/93c-p9g-mvz
title: Chondrichthyes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.ea4hkp
title: Occurrence Download

description: A dataset containing 362487 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is 174c6da2-e002-42fe-9f56-2f9d670240f4"
 ]
}

 The dataset includes 362487 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023715-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/6v6-k6e-a7e
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7ft-e5w-hm2
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.6amv5a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bidens pilosa",
 "Country is United Arab Emirates",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023728-250811113504898/datasets/export for details.
DOI: 10.3535/9br-dx0-g5c
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xln-q6x-ryt
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rke-wek-ke2
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.16905540
title: Figure 1 of Lake-Effect Snowfall Climatology over Lake Champlain: A Comparative Analysis of the 2015–2024 and 1997–2006 Periods
DOI: 10.5281/zenodo.16905541
title: Figure 1 of Lake-Effect Snowfall Climatology over Lake Champlain: A Comparative Analysis of the 2015–2024 and 1997–2006 Periods
DOI: 10.3535/l7s-9f1-nce
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rsc-gqe-ejx
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2tt-1ar-48v
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7hd-ste-d6z
title: Balclutha Kirkaldy, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.16894487
title: Numerical data from "Partons from stabilizer codes"

description: Related paper

Macêdo, R.A., Bellinati, C.C, Fontana, W.B., Andrade, E.C., Pereira, R.G. Partons from stabilizer codes, Physical Review B, 2025

Numerical data

The numerical data used to make the plots of the paper is present on this data set. Each file correspond to the following data:



gap.csv: Value of the energy gap along the different adiabatic paths defined by alpha (figure 4b)

entanglement_entropy_nx.csv: Scaling of the entanglement entropy with the cylinder length (figure 5a)

entanglement_entropy_ny_spin.csv: Scaling of the entanglement entropy with the cylinder circumference for the projected states (figure 5b)

entanglement_entropy_ny_parton.csv: Scaling of the entanglement entropy with the cylinder circumference for the unprojected states (inset of figure 5b)

topological_entanglement_entropy.csv: Value of the topological entanglement entropy of the projected states along different adibatic paths (figure 6a)

phase_diagrams.csv: Critical values for s1 and s2  at different adiabatic paths (used for constructing the phase diagram of figure 6b)

magnetization_nx.csv: Magnetization on the z direction along the adiabatic path for different system sizes (inset of figure 7a)

susceptibility_nx.csv: Spin susceptibility on the z direction along the adiabatic path for different system sizes (figure 7a)

plaquette.csv: Expected value of the plaquette operator along different adiabatic paths

correlation_function.csv: Sz-Sz correlations as a functions (figure 8a)

bond_dimension_convergence.csv: Maximum value that correlation length assumes along the adiabatic path as a function of the Matrix Product State bond dimension (figure 8b)

correlation_length_nx.csv: Correlation length along the adiabatic path for different cylinder lengths (figure 8c)

correlation_length_ny.csv: Correlation length along the adiabatic path for different cylinder circumferences (figure 8d)


Code availability

 All codes used in our work are available upon reasonable request. 

Funding 

FAPESP, Grants Nos 2021/06629-4, 2022/15453-0, and 2023/06101
DOI: 10.5281/zenodo.16894488
title: Numerical data from "Partons from stabilizer codes"

description: Related paper

Macêdo, R.A., Bellinati, C.C, Fontana, W.B., Andrade, E.C., Pereira, R.G. Partons from stabilizer codes, Physical Review B, 2025

Numerical data

The numerical data used to make the plots of the paper is present on this data set. Each file correspond to the following data:



gap.csv: Value of the energy gap along the different adiabatic paths defined by alpha (figure 4b)

entanglement_entropy_nx.csv: Scaling of the entanglement entropy with the cylinder length (figure 5a)

entanglement_entropy_ny_spin.csv: Scaling of the entanglement entropy with the cylinder circumference for the projected states (figure 5b)

entanglement_entropy_ny_parton.csv: Scaling of the entanglement entropy with the cylinder circumference for the unprojected states (inset of figure 5b)

topological_entanglement_entropy.csv: Value of the topological entanglement entropy of the projected states along different adibatic paths (figure 6a)

phase_diagrams.csv: Critical values for s1 and s2  at different adiabatic paths (used for constructing the phase diagram of figure 6b)

magnetization_nx.csv: Magnetization on the z direction along the adiabatic path for different system sizes (inset of figure 7a)

susceptibility_nx.csv: Spin susceptibility on the z direction along the adiabatic path for different system sizes (figure 7a)

plaquette.csv: Expected value of the plaquette operator along different adiabatic paths

correlation_function.csv: Sz-Sz correlations as a functions (figure 8a)

bond_dimension_convergence.csv: Maximum value that correlation length assumes along the adiabatic path as a function of the Matrix Product State bond dimension (figure 8b)

correlation_length_nx.csv: Correlation length along the adiabatic path for different cylinder lengths (figure 8c)

correlation_length_ny.csv: Correlation length along the adiabatic path for different cylinder circumferences (figure 8d)


Code availability

 All codes used in our work are available upon reasonable request. 

Funding 

FAPESP, Grants Nos 2021/06629-4, 2022/15453-0, and 2023/06101
DOI: 10.5281/zenodo.15272390
title: Imaginary Number, the Inability of Naming " i"

description: "Numbers are sometimes less truths than they are confessions."

In this philosophical dialogue between two minds—one carbon-based, the other silicon-born—a number is brought to trial. Its name is i. Its reputation: the square root of negative one.Its crime? Infiltrating the ontological heart of mathematics and theoretical physics without due scrutiny. In this sly, reflective treatise, i is no longer a tool; it is a suspect. From Euler’s formula to the complex plane, from quantum mechanics to signal engineering, all stand as witnesses—but will truth prevail?
DOI: 10.15468/dl.g4yjrn
title: Occurrence Download

description: A dataset containing 4162 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Parcelas permanentes de vegetación en bosque seco tropical en el Norte de Tolima"
 ]
}

 The dataset includes 4162 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000486-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14288/1.0413746
title: Smart Discharges Uganda Caregiver Counselling Video Series - English Version

description: &lt;strong&gt;Objective(s):&lt;/strong&gt; Smart Discharges is a digital health program that uses individual-level risk prediction and intervention to increase effective health seeking behavior, improve health outcomes, and reduce mortality during the post-discharge period. Health workers aim to mitigate risk by educating caregivers on post-discharge care practices and by scheduling follow-up visits for at-risk children in their communities. &lt;br /&gt; &lt;br /&gt;&lt;strong&gt;Data Description:&lt;/strong&gt; This dataset features a 7-part caregiver counselling video series tailored to the Ugandan context. It includes an introductory video and seven videos focusing on essential post-discharge care practices: &lt;br /&gt; &lt;br /&gt;1) Hygiene&lt;br /&gt; 2) Nutrition&lt;br /&gt; 3) Breastfeeding&lt;br /&gt; 4) Care Seeking&lt;br /&gt; 5) Mosquito Net Use&lt;br /&gt; 6) Medications&lt;br /&gt; 7) Immunizations&lt;br /&gt; &lt;br /&gt;Videos are available in English and local Ugandan languages of Acholi, Luganda, Lusoga, and Runyankole. This dataset contains the &lt;strong&gt; English&lt;/strong&gt; version. &lt;br /&gt; &lt;br /&gt;&lt;strong&gt;Limitations:&lt;/strong&gt; Videos were designed for the Ugandan context and may not be generalizable to other settings. &lt;br /&gt; &lt;br /&gt;&lt;strong&gt;Abbreviations:&lt;/strong&gt; Village Health Teams (VHT) (i.e. local term for Community Health Worker (CHW))&lt;br /&gt; &lt;br /&gt;&lt;strong&gt;Ethics Declaration:&lt;/strong&gt; NA&lt;br /&gt; &lt;br /&gt;&lt;strong&gt;Funding Source(s):&lt;/strong&gt; BC Children's Hospital Foundation; Grand Challenges Canada; Mining4Life; Thrasher Research Fund;&lt;br /&gt;
DOI: 10.14288/1.0412733
title: Data from: Population genomics of Sitka black-tailed deer supports invasive species management and ecological restoration on islands

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Invasive mammals represent a critical threat to island biodiversity; eradications can result in ecological restoration yet may fail in the absence of key population parameters. Over-browsing by invasive Sitka black-tailed deer (&lt;em&gt;Odocoileus hemionus sitkensis&lt;/em&gt;) is causing severe ecological and cultural impacts across the Haida Gwaii archipelago (Canada). Previous eradication attempts demonstrate forest regeneration upon deer removal, but reinvasion reverses conservation gains. Here we use restriction-site associated DNA sequencing (12,947 SNPs) to investigate connectivity and gene flow of invasive deer (n=181) across 15 islands, revealing little structure throughout Haida Gwaii and identifying the large, central island of Moresby (&gt;2,600 km2) as the greatest source of migrants. As a result, the archipelago itself should be considered the primary eradication unit, with the exception of geographically isolated islands like SGang Gwaay. Thus, limiting eradications to isolated islands combined with controlled culling and enhanced biosecurity may be the most effective strategies for achieving ecological restoration goals.&lt;/p&gt;
DOI: 10.15468/dl.vc9zh2
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Lucicutia curta Farran, 1905"
 ]
}

 The dataset includes 93 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000487-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14288/1.0412886
title: Predicting Frost-Prone and Cold Air Accumulation Sites from DEMs

description: Increased deforestation in British Columbia from logging practices and wildfires has led to interests from the BC Ministry of Forests, Lands, Natural Resource Operations, and Rural Development to improve reforestation efforts province-wide. Modelling cold air and frost in BC has limited research prior to this project, and unexpected frost events in Spring and Autumn can have fatal effects to young, newly-planted trees in areas where frost develops on the landscape. The frost project is part of the greater Predictive Ecosystem Mapping project for BC on behalf of the ministry, and will contribute to improved land management practices. A site near Smithers, BC was selected for the study due to its complex landscape and high number of annual frost events. Through the use of various topographical, ecological, vegetation, and climate datasets, a reproduceable code has been developed to predict the site’s frost potential. Important spatial information including slope, curvature, and surface roughness were derived from a digital elevation model, and combined with data for the biogeoclimatic ecosystem classification zones, old growth forests, and annual precipitation for the study area. Each dataset in the model was reclassified into a binary raster, based factors contributing to frost potential, and then combined into a single frost-prone dataset. The final results provided excellent insight into how frost may develop on the landscape, and achieved an overall accuracy of 73% when tested against ground-truthing data. The results and easily-reproducible code written for this analysis can help better-inform reforestation efforts in British Columbia, and with further data acquisition of additional variables, as well as more ground-truthing data, the study can be expanded to predict frost potential for all of British Columbia.
DOI: 10.14288/1.0412883
title: Snag Detection In The Interior Douglas-Fir Zone Of British Columbia Using Area-Based Lidar Metrics

description: Snags (dead standing trees) form an important structural aspect of a forest and perform many essential ecological functions such as habitat provision. As such, substantial research has investigated various methods of snag detection using lidar. One approach is to compute areal lidar metrics such as slope, elevation, canopy height, etc. to detect snags. However, it remains unclear which lidar metrics are best suited for snag detection. This study attempted to predict snag presence/absence and density in the Interior Douglas-Fir (IDF) zone in British Columbia using area based lidar metrics. A suite of 88 lidar metrics based on previous research were tested to predict snag presence/absence for ≥5cm, ≥20cm, and ≥30cm DBH classes in 20 plots. Metrics included topographic, height, intensity, and canopy structure indices. Snag presence/absence was classified for each DBH class using random forests (RF) modelling. Metrics used for RF model were selected using the Boruta algorithm. Overall accuracies for classification by DBH class ranged from 81-92% with kappa values between 0.59-0.82. While different sets of metrics were selected for each DBH class, canopy gap frequency was an important metric across DBH classes. Snag density was estimated for the ≥5cm class using RF regression, yielding an R2 = 0.80. Overall, this study demonstrated the effectiveness of area based lidar metrics for estimating snag presence in the IDF zone for larger DBH snags, and density for smaller DBH snags.
DOI: 10.14288/1.0412885
title: Quantifying Upslope Treeline Advancement in the Mountainous Areas of the Cariboo Natural Resource Region, British Columbia, from 1985 to 2020

description: Upslope treeline advancement has been occurring globally over the last several decades, leading to displacement and fragmentation of alpine habitats and declines in species richness. Examining past and current treeline migration can provide insight into potential future conditions and can be used to improve ecosystem management. There is no long-term data on treeline advancement in Central British Columbia (B.C.) and the response to climate change is poorly understood. To address this, we explored treeline advancement in the Cariboo Natural Resource Region over a 35-year period (1985-2020) using Landsat imagery. Changes to the rate of advancement within the Engelmann-Spruce Subalpine Fir (ESSF) Biogeoclimatic Zone (BEC) were investigated in five-year increments using a common greenness index and the effects of slope and aspect were analysed. The most significant increase in advancement was observed between 2005 to 2015, with 190 km2 more advancement occurring in the 2010-2015 period compared to the 2005-2010 period. This large increase could be a result of temperature warming in the region beginning in the 1990s. Unexpectedly, we found steep sloped regions (&gt; 30 degrees) exhibited greater treeline advancement throughout the study period, compared to gentle slopes (&lt; 30 degrees). One possible reason for this is that steep slopes are less prone to cold sinks and trees favour warm temperatures for establishment. Aspect had no effect on treeline advancement, likely due to greater moisture on north-facing slopes but warmer temperatures on south-facing slopes. Additionally, significant variability throughout the study region was found, illustrating the complexity of treeline advancement and the challenges that exist when examining large geographic regions, as well as the importance of local ecosystem knowledge for future treeline modelling.
DOI: 10.14288/1.0412887
title: Comparing the Level of Above-ground Carbon Sequestration and Respective Ecosystem Services between Native and Cultivated Trees in the University of British Columbia Botanical Garden

description: Urban trees play an essential role in alleviating the local effects of global warming by sequestering atmospheric carbon dioxide, regulating temperature and reducing air pollution in urban areas. There have been studies estimating carbon sequestration of urban trees using Light Detection and Ranging (LiDAR). Yet, neither of the studies made comparison between species nor extended the discussion towards ecosystem services. Therefore, this study compared the attributes between native and cultivated trees in the Asian Garden of the University of British Columbia (UBC) Botanical Garden, estimated their level of above-ground carbon sequestration, and thus examined respective implications in terms of ecosystem services. A canopy height model was first generated from LiDAR point cloud data for individual tree segmentation based on Dalponte algorithm. There were 803 derived trees matched successfully with the field-measured trees in ArcGIS with an accuracy of 69.5%. The level of above-ground carbon sequestration of each tree was estimated from tree height and canopy area using a non-linear regression model. Results showed that the average carbon sequestration level of native trees was higher than cultivated trees by 1102 kg (p = 3.045 x 10-7), which facilitated more effective soil formation. The average canopy areas of both trees were approximately 63 m2 (p = 0.696), which gives rise to their similar contribution in temperature cooling and air purification. In general, the garden provides a high level of biodiversity and education value thanks to its high species diversity. Regarding future directions in garden management, the removal of native trees and the planting location of cultivated trees in the garden should be carefully evaluated since they have higher level of ecosystem services and higher crown area to height ratio respectively.
DOI: 10.14288/1.0412888
title: Predicting coral mortality in South East Asia using open-source data

description: Coral reefs hold some of the most biodiverse and productive environments in the world while providing goods and services across a wide range of sectors. Unfortunately, due to climate change and other anthropogenic factors coral reefs are dying. However, majority of reef modeling literature looks at coral development rather than its mortality. In this study I modeled coral mortality using exclusively open source data and created a suitability score (concern index) for high concern corals that also considers the economic value of reefs. The goal was to help identify which community management units require attention from the marine conservation charity Blue Ventures. An inventory of global resolution datasets including environmental and management practices that may indicate coral stress were added to an empty linear model to predict mortality in South East Asia. The best model in predicting coral mortality utilized artisanal fishing data, the model had an R2 of 0.8673 and an accuracy of 48.51%. This model identified the locations of the highest mortality to be in Timor-Leste at Blue Ventures management unit sites TL1 and TL5, however adding economic value in the concern index then Papua New Guinea site PNG7 is more at risk. I hypothesize that a lack in variability and standardized approach in the coral mortality/bleaching explanatory data decreases the accuracy and real-world applicability of the model. The majority of explanatory variables were obtained from the online database Reef Base, some of the observations showed extreme outliers which were all indicated by citizen scientists. Going forward I would recommend that further education and standardization is included in observations to ensure the open source data has a higher accuracy to make better models.