cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3711724_d1.v1
title: Additional file 1: of Right ventricular ejection fraction measurements using two-dimensional transthoracic echocardiography by applying an ellipsoid model

description: RVEF calc for each observer. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3711706_d2.v1
title: Additional file 11: of Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants

description: GS_HRC_imputed_Total_cholesterol_significant_SNPS. (XLSX 92 kb)
DOI: 10.15468/dl.tkzhtq
title: Occurrence Download

description: A dataset containing 1000 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma macrodactylum sigillatum Ferguson, 1961)"
 ]
}

 The dataset includes 1000 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039397-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1124862
title: Images from an Archaeological Watching Brief at 28 Melrose Road, West Mersea, Essex, September 2022

description: This collection comprises images from archaeological monitoring (watching brief) at 28 Melrose Road, West Mersea, Essex. This work was undertaken by Colchester Archaeological Trust in September 2022. A brick-lined well was identified (F2) which was probably constructed at around the same time as the houses on Melrose Road in the early 20th century and acted as the water supply to the house before West Mersea was connected to the mainland water supply in 1965. Many of the houses on Melrose Road are colloquially known to have their own personal wells on site, suggesting that the initial owners of the houses had substantial wealth.
DOI: 10.6084/m9.figshare.c.3719692_d1
title: Additional file 1: Tables S1-S6. of Myeloid C/EBPβ deficiency reshapes microglial gene expression and is protective in experimental autoimmune encephalomyelitis

description: List the genes significantly up-regulated (tables 1, 3 and 5) or down-regulated (tables 2, 4 and 6) by the absence of C/EBPβ in control (tables 1, 2), LPS-treated (tables 3, 4) and LPS+IFNγ-treated (tables 5, 6) primary microglial cultures. These data were obtained by RNAseq as described in Methods. (ZIP 253 kb)
DOI: 10.6084/m9.figshare.c.3719686_d2.v1
title: Additional file 2: of Responsiveness of cats (Felidae) to silver vine (Actinidia polygama), Tatarian honeysuckle (Lonicera tatarica), valerian (Valeriana officinalis) and catnip (Nepeta cataria)

description: Raw data.xlsx. Microsoft Excel 2013 file containing raw data (among others gender, age and responsiveness scores) for the domestic cats as well as for the tigers and bobcats. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3719686_d2
title: Additional file 2: of Responsiveness of cats (Felidae) to silver vine (Actinidia polygama), Tatarian honeysuckle (Lonicera tatarica), valerian (Valeriana officinalis) and catnip (Nepeta cataria)

description: Raw data.xlsx. Microsoft Excel 2013 file containing raw data (among others gender, age and responsiveness scores) for the domestic cats as well as for the tigers and bobcats. (XLSX 17Â kb)
DOI: 10.5519/qd.0x4ntdyl
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (240 records)
DOI: 10.6084/m9.figshare.c.3719710_d1.v1
title: Additional file 1: of Reliability and acceptability of six station multiple mini-interviews: past-behavioural versus situational questions in postgraduate medical admission

description: Rating rubrics. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3722950_d3
title: MOESM3 of Tubulointerstitial nephritis antigen-like 1 protein is downregulated in the placenta of pre-eclamptic women

description: Additional file 3: Table S2. Western Blot normalization calculations.
DOI: 10.6084/m9.figshare.c.3722956_d3
title: Additional file 3: of KNN-MDR: a learning approach for improving interactions mapping performances in genome wide association studies

description: The data set(s) supporting the results of TableÂ 2. (ZIP 28603 kb)
DOI: 10.6084/m9.figshare.c.3722956_d3.v1
title: Additional file 3: of KNN-MDR: a learning approach for improving interactions mapping performances in genome wide association studies

description: The data set(s) supporting the results of TableÂ 2. (ZIP 28603 kb)
DOI: 10.6084/m9.figshare.c.3722971_d1.v1
title: Additional file 1: Table S1. of metaX: a flexible and comprehensive software for processing metabolomics data

description: The fold change and p-value for all of the features. (XLSX 146 kb)
DOI: 10.6084/m9.figshare.c.3722971_d1
title: Additional file 1: Table S1. of metaX: a flexible and comprehensive software for processing metabolomics data

description: The fold change and p-value for all of the features. (XLSX 146 kb)
DOI: 10.6084/m9.figshare.c.3722968_d3.v1
title: Additional file 1: Table S1. of TRIM8 restores p53 tumour suppressor function by blunting N-MYC activity in chemo-resistant tumours

description: Main characteristics of patients affected by clear cell Renal Cell Carcinoma (ccRCC) and renal oncocytoma (RO). The anagraphic (gender and age) and clinical (Fuhrman grade) data are reported. (XLSX 65 kb)
DOI: 10.15468/dl.nx8ywe
title: Occurrence Download

description: A dataset containing 29903 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma maculatum (Shaw, 1802))"
 ]
}

 The dataset includes 29903 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039398-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3725113_d3.v1
title: Additional file 3: Table S3. of Symbiosis and microbiome flexibility in calcifying benthic foraminifera of the Great Barrier Reef

description: Relative abundance of Bacillariophyta associated with A. lobifera across all reef sites. (XLS 39Â kb)
DOI: 10.6084/m9.figshare.c.3725113_d3
title: Additional file 3: Table S3. of Symbiosis and microbiome flexibility in calcifying benthic foraminifera of the Great Barrier Reef

description: Relative abundance of Bacillariophyta associated with A. lobifera across all reef sites. (XLS 39Â kb)
DOI: 10.6084/m9.figshare.c.3725113_d4.v1
title: Additional file 4: Table S5. of Symbiosis and microbiome flexibility in calcifying benthic foraminifera of the Great Barrier Reef

description: Absolute and relative abundances of OTUs identified, and main bacterial taxa associated with A. lobifera across all reef sites. (XLS 213Â kb)
DOI: 10.6084/m9.figshare.c.3725125_d1.v1
title: Additional file 1 of Identification of long non-coding transcripts with feature selection: a comparative study

description: Table S1. Features considered in the study. (XLS 46 kb)
DOI: 10.6084/m9.figshare.c.3725128_d1.v1
title: MOESM1 of OLFM4, KNG1 and Sec24C identified by proteomics and immunohistochemistry as potential markers of early colorectal cancer stages

description: Additional file 1: Table S1. The 5258 proteins found significant in the differential proteomic discovery study comparing DH versus DI versus pT1N0M0 versus pT2N0M0. Abbreviations: DH: diverticulitis (adjacent normal tissue), DI: diverticulitis inflammatory (diverticulitis zone itself), ADK: adenocarcinome.
DOI: 10.6084/m9.figshare.c.3725113_d4
title: Additional file 4: Table S5. of Symbiosis and microbiome flexibility in calcifying benthic foraminifera of the Great Barrier Reef

description: Absolute and relative abundances of OTUs identified, and main bacterial taxa associated with A. lobifera across all reef sites. (XLS 213Â kb)
DOI: 10.6084/m9.figshare.c.3725125_d1
title: Additional file 1 of Identification of long non-coding transcripts with feature selection: a comparative study

description: Table S1. Features considered in the study. (XLS 46 kb)
DOI: 10.6084/m9.figshare.c.3728656_d1
title: Additional file 1: Table S1. of Genome-wide methylation analysis identifies a core set of hypermethylated genes in CIMP-H colorectal cancer

description: 258 genes hypermethylated in more than 90% of all CIMP-H tumours. Two-hundred fifty eight CpG islands are hypermethylated in more than 90% of CIMP-H tumours. CpG islands hypermethylated in 100% of CIMP-H tumours are highlighted in bold. (XLSX 49Â kb)
DOI: 10.6084/m9.figshare.c.3728647_d2
title: Additional file 2: of Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment

description: Descriptions of sequencing data used to construct a mouse epigenetic-aging model. Tables describing the samples used to train and test the mouse epigenetic-aging model, and detailed alignment statistics corresponding to the samples used for analyses related to FigsÂ 2 and 3. (XLSX 93 kb)
DOI: 10.6084/m9.figshare.c.3728623_d4.v1
title: Additional file 4 of Basal-like breast cancer: molecular profiles, clinical features and survival outcomes

description: Tables S7, S8 and S9. MicroRNAs differentiating between Basal I and Basal II and the corresponding gene targets. Table S7 shows the miRNAs differentially expressed in Basal I and II subgroups, with the corresponding p-value in the METABRIC training and validation sets. Tables S8 and S9 list miRNAs and all gene targets for Basal I and Basal II, respectively. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.c.3728623_d4
title: Additional file 4 of Basal-like breast cancer: molecular profiles, clinical features and survival outcomes

description: Tables S7, S8 and S9. MicroRNAs differentiating between Basal I and Basal II and the corresponding gene targets. Table S7 shows the miRNAs differentially expressed in Basal I and II subgroups, with the corresponding p-value in the METABRIC training and validation sets. Tables S8 and S9 list miRNAs and all gene targets for Basal I and Basal II, respectively. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.c.3728647_d4.v1
title: Additional file 4: of Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment

description: Epigenetic age predictions of long-lived mice and wild-type controls. Tables describing the predictions of epigenetic age for long-lived mice and wild-type controls, including summary tables describing statistical tests that were performed using this underlying data (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3728647_d3.v1
title: Additional file 3: of Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment

description: Epigenetic-aging model with weights in the units of log2(days) and nearest genes. The CpG sites displayed by chromosome:start:stop (0-based) with associated weights and the intercept. These units are in log2(age in days). The nearest genes, distance from nearest gene (bp), and/or overlapping histone/chromatin features are reported. The directionality refers to upstream or downstream relative to the reference sequence position. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3728647_d3
title: Additional file 3: of Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment

description: Epigenetic-aging model with weights in the units of log2(days) and nearest genes. The CpG sites displayed by chromosome:start:stop (0-based) with associated weights and the intercept. These units are in log2(age in days). The nearest genes, distance from nearest gene (bp), and/or overlapping histone/chromatin features are reported. The directionality refers to upstream or downstream relative to the reference sequence position. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3728647_d4
title: Additional file 4: of Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment

description: Epigenetic age predictions of long-lived mice and wild-type controls. Tables describing the predictions of epigenetic age for long-lived mice and wild-type controls, including summary tables describing statistical tests that were performed using this underlying data (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3733087_d2
title: MOESM2 of Proteomic analysis of protein purified derivative of Mycobacterium bovis

description: Additional file 2: Table S2. The list of identified proteins in bPPDs. Sequence coverage, number of unique peptides, as well as total weighted spectra as a semi-quantitative measure of protein abundance, are reported.
DOI: 10.6084/m9.figshare.c.3733087_d3.v1
title: MOESM3 of Proteomic analysis of protein purified derivative of Mycobacterium bovis

description: Additional file 3: Table S3. Dimethyl labeling-based quantification of proteins present in samples It, NLand Ip relative to sample S. Result of single replicates as well as average H:L and M:L ratios, their associated p-values and number of observations (unique peptides) are reported.
DOI: 10.6084/m9.figshare.c.3733087_d3
title: MOESM3 of Proteomic analysis of protein purified derivative of Mycobacterium bovis

description: Additional file 3: Table S3. Dimethyl labeling-based quantification of proteins present in samples It, NLand Ip relative to sample S. Result of single replicates as well as average H:L and M:L ratios, their associated p-values and number of observations (unique peptides) are reported.
DOI: 10.15468/dl.9ssfwa
title: Occurrence Download

description: A dataset containing 52028178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Fossil, Living Specimen)",
 "MediaType is one of (Image, Video, Audio)",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 52028178 records from 698 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039359-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3733087_d4.v1
title: MOESM4 of Proteomic analysis of protein purified derivative of Mycobacterium bovis

description: Additional file 4: Table S4. Proteins found differentially abundant in samples It, NL and Ip compared to sample S. The file contains three data sheets reporting 44, 34 and 30 proteins found at significantly different levels in samples It, NL and Ip, respectively. These proteins were mostly present at very low levels in all preparations. Fold changes &gt;2 and &lt;0.5 are reported in two separate lists.
DOI: 10.6084/m9.figshare.c.3733117_d2.v1
title: Additional file 2: Table S9. of Shared genetic influences between dimensional ASD and ADHD symptoms during child and adolescent development

description: Pathway-based dissection of additive genetic variance in SDQ-ADHD and SCDC scores according to 50 molecular signatures database hallmark gene set collections. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3733117_d2
title: Additional file 2: Table S9. of Shared genetic influences between dimensional ASD and ADHD symptoms during child and adolescent development

description: Pathway-based dissection of additive genetic variance in SDQ-ADHD and SCDC scores according to 50 molecular signatures database hallmark gene set collections. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3733087_d4
title: MOESM4 of Proteomic analysis of protein purified derivative of Mycobacterium bovis

description: Additional file 4: Table S4. Proteins found differentially abundant in samples It, NL and Ip compared to sample S. The file contains three data sheets reporting 44, 34 and 30 proteins found at significantly different levels in samples It, NL and Ip, respectively. These proteins were mostly present at very low levels in all preparations. Fold changes &gt;2 and &lt;0.5 are reported in two separate lists.
DOI: 10.6084/m9.figshare.c.3733102_d3.v1
title: MOESM3 of Global gene expression in Escherichia coli, isolated from the diseased ocular surface of the human eye with a potential to form biofilm

description: Additional file 3: Table S2. Up regulation of significantly differentially regulated genes in ocular Escherichia coli L-1216/2010 biofilm cells versus ocular E. coli L-1339/2013 cells which do not form a biofilm as the control.
DOI: 10.6084/m9.figshare.c.3735457_d11.v1
title: Additional file 6: of Linkages between changes in the 3D organization of the genome and transcription during myotube differentiation in vitro

description: FPKM values for geďťżnes associated with muscle cell differentiation from Figure 1. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3735502_d6.v1
title: Additional file 6: Table S5. of Male fertility status is associated with DNA methylation signatures in sperm and transcriptomic profiles of bovine preimplantation embryos

description: Differentially Methylated Regions between high and low SCR sires (FDR &lt;10%). (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3735457_d11
title: Additional file 6: of Linkages between changes in the 3D organization of the genome and transcription during myotube differentiation in vitro

description: FPKM values for geďťżnes associated with muscle cell differentiation from Figure 1. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3735457_d12
title: Additional file 7:ďťż of Linkages between changes in the 3D organization of the genome and transcription during myotube differentiation in vitro

description: Data for the 10% up or down differentially expressed genes in different conditions. (XLSX 160 kb)
DOI: 10.6084/m9.figshare.c.3735457_d13.v1
title: Additional file 8: of Linkages between changes in the 3D organization of the genome and transcription during myotube differentiation in vitro

description: Gene ontology analysis for muscle development enrichment genes. (XLSX 22 kb)
DOI: 10.15468/dl.q4w6ue
title: Occurrence Download

description: A dataset containing 13343 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is one of (BRA.5.215_2, BRA.5.396_2, BRA.5.271_2, BRA.5.416_2, BRA.5.113_2, BRA.5.341_2, BRA.5.10_2)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 13343 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039399-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3735457_d14.v1
title: Additional file 9: of Linkages between changes in the 3D organization of the genome and transcription during myotube differentiation in vitro

description: Coordinates of regions that switched from A to B compartment. (XLSX 1105 kb)
DOI: 10.6084/m9.figshare.c.3735457_d13
title: Additional file 8: of Linkages between changes in the 3D organization of the genome and transcription during myotube differentiation in vitro

description: Gene ontology analysis for muscle development enrichment genes. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3735502_d6
title: Additional file 6: Table S5. of Male fertility status is associated with DNA methylation signatures in sperm and transcriptomic profiles of bovine preimplantation embryos

description: Differentially Methylated Regions between high and low SCR sires (FDR &lt;10%). (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3735457_d14
title: Additional file 9: of Linkages between changes in the 3D organization of the genome and transcription during myotube differentiation in vitro

description: Coordinates of regions that switched from A to B compartment. (XLSX 1105 kb)
DOI: 10.6084/m9.figshare.c.3741101_d1
title: Additional file 1: of Predominance and association risk of Blastocystis hominis subtype I in colorectal cancer: a case control study

description: Raw results data of different patient groups. Description of data: The original numbers and information of different groups of investigated patients along with the raw data of the obtained results. (XLSX 50Â kb)
DOI: 10.15468/dl.rdyw8b
title: Occurrence Download

description: A dataset containing 29903 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma maculatum (Shaw, 1802))"
 ]
}

 The dataset includes 29903 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039400-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3741095_d3.v1
title: Additional file 3: Figure S2. of The role of Tre6P and SnRK1 in maize early kernel development and events leading to stress-induced kernel abortion

description: Kernels harvested 3 DAP were tested for long term viability in culture. After sterilization, kernels were plated on MS agar and incubated in the dark at 24 °C. Control kernels on continuous sucrose (150 mM) are indicated with closed (black) squares and sucrose starved kernels are indicated by white (open) squares. Means are plotted using 4 biological replicates consisting of 3 plants each. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3741095_d4.v1
title: Additional file 4: Table S2. of The role of Tre6P and SnRK1 in maize early kernel development and events leading to stress-induced kernel abortion

description: Growing conditions for field grown maize plants. Monthly and cumulative temperature (°C), growing degree days (GDD) (base 10 °C for Zea mays), and precipitation (cm) for the University of Nebraska-Lincoln campus field plots for the 2012, 2013, and 2014 growing seasons. The mean is determined on the 20-year average. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3741095_d3
title: Additional file 3: Figure S2. of The role of Tre6P and SnRK1 in maize early kernel development and events leading to stress-induced kernel abortion

description: Kernels harvested 3 DAP were tested for long term viability in culture. After sterilization, kernels were plated on MS agar and incubated in the dark at 24 °C. Control kernels on continuous sucrose (150 mM) are indicated with closed (black) squares and sucrose starved kernels are indicated by white (open) squares. Means are plotted using 4 biological replicates consisting of 3 plants each. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3741095_d4
title: Additional file 4: Table S2. of The role of Tre6P and SnRK1 in maize early kernel development and events leading to stress-induced kernel abortion

description: Growing conditions for field grown maize plants. Monthly and cumulative temperature (°C), growing degree days (GDD) (base 10 °C for Zea mays), and precipitation (cm) for the University of Nebraska-Lincoln campus field plots for the 2012, 2013, and 2014 growing seasons. The mean is determined on the 20-year average. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3741113_d1.v1
title: Additional file 1: of Homology to peptide pattern for annotation of carbohydrate-active enzymes and prediction of function

description: Conserved Peptide Patterns for all Carbohydrate-Active Enzyme Families and CBMs. This file includes all conserved peptide patterns for all PPR groups and functional data for the enzymes in each group. (XLSX 2251 kb)
DOI: 10.6084/m9.figshare.c.3741113_d1
title: Additional file 1: of Homology to peptide pattern for annotation of carbohydrate-active enzymes and prediction of function

description: Conserved Peptide Patterns for all Carbohydrate-Active Enzyme Families and CBMs. This file includes all conserved peptide patterns for all PPR groups and functional data for the enzymes in each group. (XLSX 2251 kb)
DOI: 10.6084/m9.figshare.c.3741113_d2.v1
title: Additional file 2: of Homology to peptide pattern for annotation of carbohydrate-active enzymes and prediction of function

description: Hotpep annotation of CBMs based on conserved peptides identified by PPR analysis. This file includes the results of Hotpep annotation of CBMs based on conserved peptides identified by PPR analysis with different parameters as indicated. (XLSX 15 kb)