cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5285/756bba8343b54ff7a9d1f7c48f86905d
title: piClim-370 data produced by the CanESM5-1 model for the Regional Aerosol Model Intercomparison Project (RAMIP)

description: This record contains data for the piClim-370 experiment simulations from the Regional Aerosol Model Intercomparison Project (RAMIP), produced using CanESM5-1. It contains NetCDF output for a set of experiments with anthropogenic emissions for the year 2050 and fixed, pre-industrial, sea surface temperatures, sea ice extent, and land use. For a full description of the experiments, see: https://gmd.copernicus.org/articles/16/4451/2023/.

The piClim-370 experiment is a fixed sea surface temperature (SST) experiment with 1850 SSTs and sea ice concentrations, following the RFMIP piClim experiment designs. Global anthropogenic forcing is taken from year 2050 of the ScenarioMIP SSP3-7.0 experiment. At least 30 years are requested.

The simulations are initialised from the CMIP6 historical experiment. Anthropogenic emissions designed for the ScenarioMIP experiments SSP3-7.0 and SSP1-2.6 are used. All experiments follow SSP3-7.0, with perturbations to regional aerosol and precursor emissions using SSP1-2.6 emissions, following the RAMIP protocol. Data are provided for a subset of CMIP6 variables, following their CMIP6 definitions. Some 3D variables are produced at reduced vertical resolution compared to CMIP6. These are identified with new variable names, as set out in the RAMIP data request: https://gmd.copernicus.org/articles/16/4451/2023/

Acronyms
------------
CanESM5-1: The Canadian Earth System Model version 5.1
SSP1-2.6: experiment based on Shared Socioeconomic Pathway SSP1 with low climate change mitigation and adaptation challenges and RCP2.6, a future pathway with a radiative forcing of 2.6 W/m2 in the year 2100.
SSP3-7.0: experiment based on Shared Socioeconomic Pathway SSP3 which is characterised by high challenges to both mitigation and adaptation and RCP7.0, a future pathway with a radiative forcing of 7.0 W/m2 in the year 2100.
ScenarioMIP: the Scenario Model Intercomparison Project simulates climate outcomes based on alternative plausible future scenarios.
CMIP6: is the sixth phase of the Coupled Model Intercomparison Project, a global collaboration of climate modellers.
RFMIP: The Radiative Forcing Model Intercomparison Project.
DOI: 10.13018/bmr15766
title: human calpastatin Domain 1
DOI: 10.13018/bmr15767
title: Backbone Resonance Assignments of the N-terminal half of hepatitis core protein
DOI: 10.13018/bmr15768
title: Backbone Resonance Assignments of the N-terminal half of hepatitis core protein
DOI: 10.13018/bmr15769
title: 1H,13C, and 15N resonance assignment of the ubiquitin like domain (UBL) of Dsk2p.
DOI: 10.13018/bmr15770
title: 1H, 13C and 15N chemical shifts for the Myxococcus xanthus CarS1 antirepressor protein
DOI: 10.13018/bmr15773
title: Analysis of Site-specific Histidine Protonation in Human Prolactin
DOI: 10.13018/bmr15774
title: Rv1761c
DOI: 10.15468/dl.x3zdyd
title: Occurrence Download

description: A dataset containing 754940 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Calidris canutus"
 ]
}

 The dataset includes 754940 records from 660 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003039-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13018/bmr15775
title: Backbone chemical shift assignment for the transmembrane and C-terminal domains of amyloid precursor protein (APP C99)
DOI: 10.13018/bmr15776
title: Pfu Rpp21 structure and assignments
DOI: 10.5281/zenodo.18783222
title: IntelliMan_WP5_Grasping, Manipulation and Arm-Hand Coordination_T5.1_Data fusion and sensing technology_IEEEICECS2024_Data

description: The dataset was collected using a wearable sensing glove while grasping 28 daily-life objects. Five subjects participated in the experiment. For each trial, a subject grasped an object for 1 second and then released it. Each subject performed 10 trials per object, resulting in 50 trials per class and 1400 total recordings (28 objects × 50 trials).

Each sample is a multichannel time series recorded at 200 Hz, with 200 time steps per trial (1 s × 200 samples/s) and 35 input channels in total, combining 5 FSR sensors and 5 IMUs (30 IMU channels). To evaluate the contribution of each sensing modality, the data were also split into two subsets: an IMU-only dataset (30 channels) and an FSR-only dataset (5 channels), enabling comparison of sensor configurations for object shape recognition.
DOI: 10.13018/bmr15777
title: Solution Structure of IG-Like Domain 23 from Human Filamin A
DOI: 10.13018/bmr15778
title: Structure of the tyrosine-O-sulfated C5a receptor N-terminus in complex with the immune evasive protein CHIPS.
DOI: 10.13018/bmr15779
title: Backbone 1H, 13C and 15N assignments for ginkbilobin-2 with C-terminal His6-tag
DOI: 10.13018/bmr15780
title: NMR structure of adenosine bulged RNA duplex with C:G-A triple
DOI: 10.13018/bmr15781
title: NMR structure of uridine bulged RNA duplex
DOI: 10.5285/a8f1d827b86d43c2969abb202c130814
title: piClim-370-126aer data produced by the CanESM5-1 model for the Regional Aerosol Model Intercomparison Project (RAMIP)

description: This record contains data for the piClim-370-126aer experiment simulations from the Regional Aerosol Model Intercomparison Project (RAMIP), produced using CanESM5-1. It contains NetCDF output for a set of experiments with anthropogenic emissions for the year 2050 and fixed, pre-industrial, sea surface temperatures, sea ice extent, and land use. For a full description of the experiments, see: https://gmd.copernicus.org/articles/16/4451/2023/.

The piClim-370-126aer experiment is a fixed sea surface temperature (SST) experiment with 1850 SSTs and sea ice concentrations, following the RFMIP piClim experiment designs. Global aerosol and precursor emissions (sulphur dioxide, black carbon and organic carbon) are taken from year 2050 of SSP1-2.6, while all other anthropogenic emissions and land use are taken from SSP3-7.0 At least 30 years are requested.

The simulations are initialised from the CMIP6 historical experiment. Anthropogenic emissions designed for the ScenarioMIP experiments SSP3-7.0 and SSP1-2.6 are used. All experiments follow SSP3-7.0, with perturbations to regional aerosol and precursor emissions using SSP1-2.6 emissions, following the RAMIP protocol. Data are provided for a subset of CMIP6 variables, following their CMIP6 definitions. Some 3D variables are produced at reduced vertical resolution compared to CMIP6. These are identified with new variable names, as set out in the RAMIP data request: https://gmd.copernicus.org/articles/16/4451/2023/

Acronyms
------------
CanESM5-1: The Canadian Earth System Model version 5.1
SSP1-2.6: experiment based on Shared Socioeconomic Pathway SSP1 with low climate change mitigation and adaptation challenges and RCP2.6, a future pathway with a radiative forcing of 2.6 W/m2 in the year 2100.
SSP3-7.0: experiment based on Shared Socioeconomic Pathway SSP3 which is characterised by high challenges to both mitigation and adaptation and RCP7.0, a future pathway with a radiative forcing of 7.0 W/m2 in the year 2100.
ScenarioMIP: the Scenario Model Intercomparison Project simulates climate outcomes based on alternative plausible future scenarios.
CMIP6: is the sixth phase of the Coupled Model Intercomparison Project, a global collaboration of climate modellers.
RFMIP: The Radiative Forcing Model Intercomparison Project.
DOI: 10.13018/bmr15782
title: 1H, 13C and 15N chemical shifts of the sylvatic Dengue 1 Envelope Protein Domain III, strain P72-1244
DOI: 10.13018/bmr15783
title: acidic fibroblast growth factor solution structure in the FGF-1-C2A binary complex: key component in the fibroblast growthfactor non-classical pathway
DOI: 10.13018/bmr15784
title: 1H, 13C, and 15N Chemical Shift Assignments for NikA(1-51)
DOI: 10.5281/zenodo.18782642
title: IMDb-based Italian TV Serial Production (2000-2023):  Series Metadata and Episode Coverage

description: This dataset contains the complete catalog of 522 Italian TV scripted series that broadcast at least one episode between 2000 and 2023, identified through IMDb searches. The dataset was created for the study "Women Off-Screen: A Data-Driven Analysis of Gender Inequalities in Italian TV Serial Production (2000-2023)." 

The catalog represents the population of Italian TV scripted serial productions available on IMDb for this period, excluding non-fiction, animated content and web series, and including both linear and non-linear productions. 

VARIABLES:



TV_series_title: The title of the TV series as listed on IMDb;

TV_series_code: The unique IMDb identifier (tconst format, e.g., tt0086779), which can be used to access the series page at https://www.imdb.com/title/[code];

TV_series_debut_year: The year in which the series first aired/premiered;

TV_series_years: The complete range of years during which the series was in production and aired episodes (format: "YYYY-YYYY" for multi-year series, or "YYYY" for single-year productions);

n_of_episodes_in_corpus: The number of episodes from this series broadcast in the timespan considerd (2000-2023). The number of episodes per series was estimated by cross-referencing IMDb, VOD platforms, Wikipedia, MYMovies and La Repubblica.


 

FILE FORMAT: CSV (Comma-Separated Values), UTF-8 encoding. The file can be opened with spreadsheet software (Excel, LibreOffice Calc, Google Sheets) or imported into statistical analysis software (R, Python, SPSS, Stata)
DOI: 10.5281/zenodo.18782643
title: IMDb-based Italian TV Serial Production (2000-2023):  Series Metadata and Episode Coverage

description: This dataset contains the complete catalog of 522 Italian TV scripted series that broadcast at least one episode between 2000 and 2023, identified through IMDb searches. The dataset was created for the study "Women Off-Screen: A Data-Driven Analysis of Gender Inequalities in Italian TV Serial Production (2000-2023)." 

The catalog represents the population of Italian TV scripted serial productions available on IMDb for this period, excluding non-fiction, animated content and web series, and including both linear and non-linear productions. 

VARIABLES:



TV_series_title: The title of the TV series as listed on IMDb;

TV_series_code: The unique IMDb identifier (tconst format, e.g., tt0086779), which can be used to access the series page at https://www.imdb.com/title/[code];

TV_series_debut_year: The year in which the series first aired/premiered;

TV_series_years: The complete range of years during which the series was in production and aired episodes (format: "YYYY-YYYY" for multi-year series, or "YYYY" for single-year productions);

n_of_episodes_in_corpus: The number of episodes from this series broadcast in the timespan considerd (2000-2023). The number of episodes per series was estimated by cross-referencing IMDb, VOD platforms, Wikipedia, MYMovies and La Repubblica.


 

FILE FORMAT: CSV (Comma-Separated Values), UTF-8 encoding. The file can be opened with spreadsheet software (Excel, LibreOffice Calc, Google Sheets) or imported into statistical analysis software (R, Python, SPSS, Stata)
DOI: 10.13018/bmr15785
title: C2A domain of synaptototagmin I solution structure in the FGF-1-C2A binary complex: key component in the fibroblast growthfactor non-classical pathway
DOI: 10.13018/bmr15786
title: 1H,13C and 15N NMR assignments of duck HBV primer loop of the epsilon encapsidation signal
DOI: 10.13018/bmr15787
title: 1H and 15N chemical shift assignments for HINT1 protein
DOI: 10.13018/bmr15788
title: X-ray crystallographic and Solution State NMR Spectroscopic Investigations of NADP+ Binding to Ferredoxin-NADP Reductase (FPR) from Pseudomonas aeruginosa
DOI: 10.13018/bmr15789
title: Chemical shift assignments for human MCFD2
DOI: 10.13140/rg.2.2.34452.97921
title: The Consensus Paper - Solving the Trust-Scalability Trilemma - Optimistic Verification via Adversarial Searchers
DOI: 10.5285/b01abe865c0e41569be6ff1f06339c70
title: piClim-370-NAE126aer data produced by the CanESM5-1 model for the Regional Aerosol Model Intercomparison Project (RAMIP)

description: This record contains data for the piClim-370-NAE126aer experiment simulations from the Regional Aerosol Model Intercomparison Project (RAMIP), produced using CanESM5-1. It contains NetCDF output for a set of experiments with anthropogenic emissions for the year 2050 and fixed, pre-industrial, sea surface temperatures, sea ice extent, and land use. For a full description of the experiments, see: https://gmd.copernicus.org/articles/16/4451/2023/.

The piClim-370-NAE126aer experiment is a fixed sea surface temperature (SST) experiment with 1850 SSTs and sea ice concentrations, following the RFMIP piClim experiment designs. Aerosol and precursor emissions (SO2, black carbon and organic carbon) over North America and Europe are taken from year 2050 of SSP1-2.6, while all other anthropogenic emissions and land use are taken from SSP3-7.0 At least 30 years are requested. North America and Europe are the regions bounded by 20W, 45E, 35N, and 70N, and 150W, 45W, 25N and 70N.

The simulations are initialised from the CMIP6 historical experiment. Anthropogenic emissions designed for the ScenarioMIP experiments SSP3-7.0 and SSP1-2.6 are used. All experiments follow SSP3-7.0, with perturbations to regional aerosol and precursor emissions using SSP1-2.6 emissions, following the RAMIP protocol. Data are provided for a subset of CMIP6 variables, following their CMIP6 definitions. Some 3D variables are produced at reduced vertical resolution compared to CMIP6. These are identified with new variable names, as set out in the RAMIP data request: https://gmd.copernicus.org/articles/16/4451/2023/

Acronyms
------------
CanESM5-1: The Canadian Earth System Model version 5.1
SSP1-2.6: experiment based on Shared Socioeconomic Pathway SSP1 with low climate change mitigation and adaptation challenges and RCP2.6, a future pathway with a radiative forcing of 2.6 W/m2 in the year 2100.
SSP3-7.0: experiment based on Shared Socioeconomic Pathway SSP3 which is characterised by high challenges to both mitigation and adaptation and RCP7.0, a future pathway with a radiative forcing of 7.0 W/m2 in the year 2100.
ScenarioMIP: the Scenario Model Intercomparison Project simulates climate outcomes based on alternative plausible future scenarios.
CMIP6: is the sixth phase of the Coupled Model Intercomparison Project, a global collaboration of climate modellers.
RFMIP: The Radiative Forcing Model Intercomparison Project.
DOI: 10.13018/bmr15790
title: NMR STRUCTURE OF THE N-TERMINAL COILED COIL DOMAIN OF THE ANDES HANTAVIRUS NUCLEOCAPSID PROTEIN
DOI: 10.13018/bmr15791
title: Solution NMR Structure of UPF0339 Protein SO3888 from Shewanella Oneidensis. Northeast Structural Genomics Consortium Target SoR190
DOI: 10.13018/bmr15792
title: talin-F2F3
DOI: 10.13018/bmr15793
title: CopR Repressor Structure
DOI: 10.13018/bmr15795
title: NMR structure of the c-terminal domain of a multiprotein bridging factor 1 (MBF1) of Trichoderma reesei
DOI: 10.13018/bmr15796
title: E2-c-Cbl recognition is necessary but not sufficient for ubiquitination activity
DOI: 10.13018/bmr15797
title: Solution structure of Tpx in the reduced state
DOI: 10.13018/bmr15798
title: Solution structure of Tpx in the oxidized state
DOI: 10.13018/bmr15799
title: HIV-1 Gag p6 C-terminal
DOI: 10.13018/bmr15800
title: Backbone and side-chain 1H, 13C, and 15N Chemical Shift Assignments for Human Galectin-1
DOI: 10.13018/bmr15801
title: ArsR DNA Binding Domain
DOI: 10.5285/409098a878974d25892226c05165023c
title: piClim-370-SAS126aer data produced by the CanESM5-1 model for the Regional Aerosol Model Intercomparison Project (RAMIP)

description: This record contains data for the piClim-370-SAS126aer experiment simulations from the Regional Aerosol Model Intercomparison Project (RAMIP), produced using CanESM5-1. It contains NetCDF output for a set of experiments with anthropogenic emissions for the year 2050 and fixed, pre-industrial, sea surface temperatures, sea ice extent, and land use. For a full description of the experiments, see: https://gmd.copernicus.org/articles/16/4451/2023/.

The piClim-370-SAS126aer experiment is a fixed sea surface temperature (SST) experiment with 1850 SSTs and sea ice concentrations, following the RFMIP piClim experiment designs. Aerosol and precursor emissions (SO2, black carbon and organic carbon) over South Asia are taken from year 2050 of SSP1-2.6, while all other anthropogenic emissions and land use are taken from SSP3-7.0 At least 30 years are requested. South Asia is the region bounded by 65 and 95E and 5 and 35N.

The simulations are initialised from the CMIP6 historical experiment. Anthropogenic emissions designed for the ScenarioMIP experiments SSP3-7.0 and SSP1-2.6 are used. All experiments follow SSP3-7.0, with perturbations to regional aerosol and precursor emissions using SSP1-2.6 emissions, following the RAMIP protocol. Data are provided for a subset of CMIP6 variables, following their CMIP6 definitions. Some 3D variables are produced at reduced vertical resolution compared to CMIP6. These are identified with new variable names, as set out in the RAMIP data request: https://gmd.copernicus.org/articles/16/4451/2023/

Acronyms
------------
CanESM5-1: The Canadian Earth System Model version 5.1
SSP1-2.6: experiment based on Shared Socioeconomic Pathway SSP1 with low climate change mitigation and adaptation challenges and RCP2.6, a future pathway with a radiative forcing of 2.6 W/m2 in the year 2100.
SSP3-7.0: experiment based on Shared Socioeconomic Pathway SSP3 which is characterised by high challenges to both mitigation and adaptation and RCP7.0, a future pathway with a radiative forcing of 7.0 W/m2 in the year 2100.
ScenarioMIP: the Scenario Model Intercomparison Project simulates climate outcomes based on alternative plausible future scenarios.
CMIP6: is the sixth phase of the Coupled Model Intercomparison Project, a global collaboration of climate modellers.
RFMIP: The Radiative Forcing Model Intercomparison Project.
DOI: 10.13018/bmr15802
title: 1H, 13C, and 15N resonance assignments of a RNA binding protein GSP13 from Bacillus subtilis
DOI: 10.13018/bmr15803
title: RalB in complex with its effector RLIP76
DOI: 10.13018/bmr15804
title: Solution NMR Structure of M. thermoautotrophicum protein MTH_1000, Northeast Structural Genomics Consortium Target TR8
DOI: 10.13018/bmr15805
title: NMR structure of protein PF0246 from Pyrococcus furiosus: target PfR75 from the Northeast Structural Genomics Consortium
DOI: 10.13018/bmr15806
title: 1H and 15N Chemical Shift Assignments and Experimental NMR Restraints for the Neurotrypsin Kringle Domain
DOI: 10.13018/bmr15807
title: The Solution Structure of gpV, the Major Tail Protein from Bacteriophage Lambda
DOI: 10.13018/bmr15808
title: Assignment of the 1H, 13C and 15N resonance of the Calponin Homology-2 domain of alpha-actinin-4
DOI: 10.13018/bmr15809
title: myristoylated yeast ARF1, GDP bound
DOI: 10.13018/bmr15810
title: Solution structure of uncharacterized protein PA1076 from Pseudomonas aeruginosa. Northeast Structural Genomics Consortium (NESG) target PaT3, Ontario Center for Structural Proteomics target PA1076.
DOI: 10.13018/bmr15811
title: Solution structure of 30S ribosomal protein S27A from Thermoplasma acidophilum
DOI: 10.13018/bmr15812
title: NMR Structure of FeoA-like protein from Clostridium acetobutylicum: Northeast Structural Genomics Consortium Target CaR178
DOI: 10.13018/bmr15813
title: 1H, 13C and 15N resonance assignments of the ribosome binding domain of E. coli Trigger Factor
DOI: 10.13018/bmr15814
title: 1H, 13C and 15N resonance assignments of the domain 5 of ABP-120 fromDictyostelium in native and 8M urea-denatured states.
DOI: 10.13018/bmr15816
title: Solution NMR Structure of Allochromatium vinosum DsrR: Northeast Structural Genomics Consortium Target OP5
DOI: 10.13018/bmr15817
title: Type III antifreeze protein isoform HPLC-12
DOI: 10.13018/bmr15818
title: Type III antifreeze protein isoform HPLC-12
DOI: 10.13018/bmr15819
title: Solution NMR Structure of the replication Factor A Related Protein from Methanobacterium thermoautotrophicum. Northeast Structural Genomics Target TR91A.
DOI: 10.13018/bmr15820
title: RRM1 of hnRNPLL
DOI: 10.13018/bmr15821
title: Structure of uncharacterized protein MJ1198 from Methanocaldococcus jannaschii.Northeast Structural Genomics Target MjR117B
DOI: 10.15468/dl.6vum27
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Plicomugil labiosus"
 ]
}

 The dataset includes 114 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003096-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13018/bmr15822
title: NMR solution structure of A3DK08 protein from Clostridium thermocellum: Northeast Structural Genomics Consortium Target CmR9
DOI: 10.13018/bmr15823
title: Solution NMR structure of protein Atu0742 from Agrobacterium Tumefaciens. Northeast Structural Genomics Consortium (NESG0) target AtT8. Ontario Center for Structural Proteomics target ATC0727.
DOI: 10.13018/bmr15824
title: Bank Vole Prion Protein (121-231)
DOI: 10.5281/zenodo.18771768
title: Protein Structure Predictions for Basler et al: A comprehensive catalogue of phages in the honey bee gut microbiome

description: 83306 protein structure predictions (ColabFold/AlphaFold2) with .pdb structures, pae JSON and pLDDT JSON outputs from ColabFold as part of Basler et al: A comprehensive catalogue of phages in the honey bee gut microbiome, used with Phold

The tarball contains 3 subdirectories and one TSV file:

renamed_pae_jsons: contains ColabFold/AlphaFold2 pae JSON files for each structure prediction

renamed_jsons: contains ColabFold/AlphaFold2 plddt JSON files for each structure prediction

renamed_pdbs: contains ColabFold/AlphaFold2 .pdb structure prediction files

plddt_ptm_len.tsv: 5 column TSV containing (for each protein in the Pharokka annotations)



protein name

 length (AA)

folded (all True) - redundant  column

 mean_plddt - mean AlphaFold2 pLDDT across the whole protein

ptm (AlphaFold2)


This file is also available in the main repository

Note that for easier Zenodo upload file size uploads, I split the tarball into 1GB chunks suffixed _partaa _partab etc.

To recombine and extract:

cat  basler_output_renamed.tar.gz_part* >  basler_output_renamed.tar.gz

tar -xzf basler_output_renamed.tar.gz

For validation, the md5sum of the overall tarball is 747e994bbfd9e07250420724e10ebe2d