cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3532899
title: Effect of biological colonization on ceramic roofing tiles by lichens and a combined laser and biocide procedure for its removal.

description: Biodeterioration damage is an important issue in conservation and restoration of built heritage, especially when ceramic materials are used. Biological colonization of ceramic roofing tiles by lichens is a common phenomenon. However, there are no reports to date of lichens removal from unglazed roofing tiles for conservation purposes. This paper for the first time reveals the results of a combined procedure undertaken to assess the removal of lichens on different kinds of unglazed ceramic roofing tiles by treatments based on both dual sequential laser irradiation and treatment using Acticide<sup>® </sup>CF biocide. Three species of lichens were identified: <em>Verrucaria nigrescens</em>, <em>Calogaya decipiens</em> and <em>Pyrenodesmia teicholyta</em>. The chemical and mineralogical composition of roofing tiles were characterized by X-ray fluorescence (XRF) spectrometry, optical polarized petrographic microscopy, and X-ray diffraction (XRD). Laser irradiation was accomplished by applying sequences of nanosecond laser pulses at two wavelengths (1064 and 266 nm). After dual sequential laser irradiation a biocide was applied. To assess the combined effect of both treatments several techniques were used, including stereo and fluorescence (FM) microscopies, scanning (SEM) and transmission (TEM) electron microscopies, and FT-Raman spectroscopy. Chemical composition of the analyzed roofing tiles was shown as a relevant factor regarding the degree of interaction between the biological colonization and the substrate, and hence, the bioweathering effect. The combined procedure has proved to be very effective in removing some lichen thalli and damaging completely the bionts in all species.
DOI: 10.5281/zenodo.3532900
title: Effect of biological colonization on ceramic roofing tiles by lichens and a combined laser and biocide procedure for its removal.

description: Biodeterioration damage is an important issue in conservation and restoration of built heritage, especially when ceramic materials are used. Biological colonization of ceramic roofing tiles by lichens is a common phenomenon. However, there are no reports to date of lichens removal from unglazed roofing tiles for conservation purposes. This paper for the first time reveals the results of a combined procedure undertaken to assess the removal of lichens on different kinds of unglazed ceramic roofing tiles by treatments based on both dual sequential laser irradiation and treatment using Acticide<sup>® </sup>CF biocide. Three species of lichens were identified: <em>Verrucaria nigrescens</em>, <em>Calogaya decipiens</em> and <em>Pyrenodesmia teicholyta</em>. The chemical and mineralogical composition of roofing tiles were characterized by X-ray fluorescence (XRF) spectrometry, optical polarized petrographic microscopy, and X-ray diffraction (XRD). Laser irradiation was accomplished by applying sequences of nanosecond laser pulses at two wavelengths (1064 and 266 nm). After dual sequential laser irradiation a biocide was applied. To assess the combined effect of both treatments several techniques were used, including stereo and fluorescence (FM) microscopies, scanning (SEM) and transmission (TEM) electron microscopies, and FT-Raman spectroscopy. Chemical composition of the analyzed roofing tiles was shown as a relevant factor regarding the degree of interaction between the biological colonization and the substrate, and hence, the bioweathering effect. The combined procedure has proved to be very effective in removing some lichen thalli and damaging completely the bionts in all species.
DOI: 10.5281/zenodo.3532911
title: X-ray and ion irradiation effects on azurite, malachite and alizarin pictorial samples

description: XPS was used to analyze X-ray effects on pellets of azurite, malachite and alizarin pure pigments and on azurite and alizarin tempera paint mock-ups, where the pigments were mixed with egg yolk. X-ray radiation damage was assessed by comparing successive high-resolution spectra acquired on the same spot. The spectra of the pure pigments show low radiation sensitivity and reactivity under the selected X-ray irradiation conditions, although some differences among them were detected. Whereas alizarin does not experience surface chemical changes during the prolonged irradiation experiment, a slow progressive chemical reduction of azurite and malachite (copper-based pigments), together with the formation of cuprite, is observed. On the other side, tempera paint mock-ups are sensitive to X-rays and alterations of the egg yolk binding medium are displayed in a shorter time scale than the induced chemical modifications of the pure pigments. Besides, XPS allows to determine that the azurite pigment and the binder interact chemically. Azurite is partially reduced in the tempera paint from the beginning of the irradiation experiment and the subsequent X-ray exposure induces further reduction
DOI: 10.5281/zenodo.3532912
title: X-ray and ion irradiation effects on azurite, malachite and alizarin pictorial samples

description: XPS was used to analyze X-ray effects on pellets of azurite, malachite and alizarin pure pigments and on azurite and alizarin tempera paint mock-ups, where the pigments were mixed with egg yolk. X-ray radiation damage was assessed by comparing successive high-resolution spectra acquired on the same spot. The spectra of the pure pigments show low radiation sensitivity and reactivity under the selected X-ray irradiation conditions, although some differences among them were detected. Whereas alizarin does not experience surface chemical changes during the prolonged irradiation experiment, a slow progressive chemical reduction of azurite and malachite (copper-based pigments), together with the formation of cuprite, is observed. On the other side, tempera paint mock-ups are sensitive to X-rays and alterations of the egg yolk binding medium are displayed in a shorter time scale than the induced chemical modifications of the pure pigments. Besides, XPS allows to determine that the azurite pigment and the binder interact chemically. Azurite is partially reduced in the tempera paint from the beginning of the irradiation experiment and the subsequent X-ray exposure induces further reduction
DOI: 10.5281/zenodo.3533273
title: Supplementary materials

description: Supplementary materials for: Multi-tool (LA-ICPMS, EMPA and XRD) investigation on heavy minerals from selected Holocene peat-bog deposits from the upper Vistula River Valley, Poland.
DOI: 10.5281/zenodo.3533274
title: Supplementary materials

description: Supplementary materials for: Multi-tool (LA-ICPMS, EMPA and XRD) investigation on heavy minerals from selected Holocene peat-bog deposits from the upper Vistula River Valley, Poland.
DOI: 10.17632/rvj5cf8cb5.1
title: Data for: Effects of the Active Smarter Kids (ASK) physical activity intervention on cardiometabolic risk factors in children: a cluster-randomized controlled trial

description: The data file contains variables used for descriptive purposes and analyses of between-group effects for the manscript; Effects of the Active Smarter Kids (ASK) physical activity intervention on cardiometabolic risk factors in children: a cluster-randomized controlled trial.
DOI: 10.18739/a2nz80q43
title: Microbial diversity and water column measurements from sea ice, Chukchi Sea, 2013-2018

description: This work explores the hypothesis that parasitic chytrids (fungi) may change the seasonal cycle of ice algal abundances and diversity by targeting specific ice algal taxa, mainly certain diatom species. In addressing this hypothesis, this grant aims at providing information on the spatial and temporal patterns of abundance, and diversity of marine fungi in arctic sea ice in comparison to water column information and relate this information to various environmental data which will include salinity, temperature, and as well as ice thickness and snow cover. Field work will be conducted between 2014 and 2015 on the fast ice in Barrow and in spring of 2015 on RV (Research Vessel) Sikulaq in the Bering sea. The combined data set will allow for a refined interpretation of the relevance of the parasitic fungi for the food web structure in arctic seas. This study is the first to explore these ecological processes in polar sea ice and can potentially lead to a paradigm change on carbon processing similar to one seen recently in freshwater science. Detailed studies on marine chytrids are rare in any ice covered marine region and these observations might stimulate new research in both Arctic and Antarctic regions. Biological community composition information will contribute to diversity research on fungi in general and the understanding of global patterns in microbial biodiversity linked. The research will have broader impacts in its engagement in teaching activities through training of two participating UAF (University of Alaska Fairbanks) students and through high school seminars as well as meeting with teachers in Barrow, and their potential participation in expeditions. A broad public audience including minorities will be kept informed through media coverage and project-specific web pages documenting the field and lab work. This data has been published in the following peer-reviewed journal articles BT Hassett, R Gradinger (2017) Eukaryotic microbial richness increases with latitude and decreasing temperature in the Pacific Subarctic domain in late winter Polar Biology 40 (11), 2161-2169 BT Hassett, ALL Ducluzeau, RE Collins, R Gradinger (2017) Spatial distribution of aquatic marine fungi across the western Arctic and sub‐arctic. Environmental Microbiology 19 (2), 475-484 BT Hassett, R Gradinger (2016) Chytrids dominate arctic marine fungal communities. Environmental Microbiology 18 (6), 2001-2009.
DOI: 10.21227/mjsf-ah34
title: Indian Diabetic Retinopathy Image Dataset (IDRiD)

description: Diabetic Retinopathy is the most prevalent cause of avoidable vision impairment, mainly affecting working age population in the world. Recent research has given a better understanding of requirement in clinical eye care practice to identify better and cheaper ways of identification, management, diagnosis and treatment of retinal disease. The importance of diabetic retinopathy screening programs and difficulty in achieving reliable early diagnosis of diabetic retinopathy at a reasonable cost needs attention to develop computer-aided diagnosis tool. Computer-aided disease diagnosis in retinal image analysis could ease mass screening of population with diabetes mellitus and help clinicians in utilizing their time more efficiently. The recent technological advances in computing power, communication systems, and machine learning techniques provide opportunities to the biomedical engineers and computer scientists to meet the requirements of clinical practice. Diverse and representative retinal image sets are essential for developing and testing digital screening programs and the automated algorithms at their core. To the best of our knowledge, the database for this challenge, IDRiD (Indian Diabetic Retinopathy Image Dataset), is the first database representative of an Indian population. Moreover, it is the only dataset constituting typical diabetic retinopathy lesions and also normal retinal structures annotated at a pixel level. This dataset provides information on the disease severity of diabetic retinopathy, and diabetic macular edema for each image. This makes it perfect for development and evaluation of image analysis algorithms for early detection of diabetic retinopathy.This dataset was available as a part of "Diabetic Retinopathy: Segmentation and Grading Challenge" organised in conjuction with IEEE International Symposium on Biomedical Imaging (ISBI-2018), Washington D.C.
DOI: 10.5281/zenodo.3524284
title: Data files of Carteron et al. "Soil abiotic and biotic properties constrain the establishment of a dominant temperate tree into boreal forests" in Journal of Ecology

description: There are five data files use for the analysis present in the article of Carteron et al "Soil abiotic and biotic properties constrain the establishment of a dominant temperate tree into boreal forests" in Journal of ecology. These files are used in R script available in GituHub. GPS_megantic.csv: contains locations of the study plots colo_as.csv: Contains a summary of the root colonization by fungi colo.csv : Contains all the data of the root colonization by fungi colo.rdata: Contains all the data of the root colonization by fungi in Rdata format soil_thick.csv : Contains soil horizon thickness measured on the field traits_as.csv: Contains the traits measured on the sugar maple seedlings
DOI: 10.5281/zenodo.3524285
title: Data files of Carteron et al. "Soil abiotic and biotic properties constrain the establishment of a dominant temperate tree into boreal forests" in Journal of Ecology

description: There are five data files use for the analysis present in the article of Carteron et al "Soil abiotic and biotic properties constrain the establishment of a dominant temperate tree into boreal forests" in Journal of ecology. These files are used in R script available in GituHub. GPS_megantic.csv: contains locations of the study plots colo_as.csv: Contains a summary of the root colonization by fungi colo.csv : Contains all the data of the root colonization by fungi colo.rdata: Contains all the data of the root colonization by fungi in Rdata format soil_thick.csv : Contains soil horizon thickness measured on the field traits_as.csv: Contains the traits measured on the sugar maple seedlings
DOI: 10.5281/zenodo.3532930
title: Analysis of heritage stones and model wall paintings by pulsed laser excitation of Raman, laser-induced fluorescence and laser-induced breakdown spectroscopy signals with a hybrid system

description: Laser based analysis of artworks benefits from the development of hybrid instruments where a single laser source serves to excite fluorescence, Raman and laser induced breakdown spectroscopy (LIBS) signals. Laser induced fluorescence (LIF) and Raman spectra provide information at the molecular level, while LIBS serves for identifying the elemental composition of the substrate under consideration. Studies using several excitation wavelengths on different types of materials and substrates help to develop and establish these hybrid systems for the conservation of artworks.
DOI: 10.5281/zenodo.3532931
title: Analysis of heritage stones and model wall paintings by pulsed laser excitation of Raman, laser-induced fluorescence and laser-induced breakdown spectroscopy signals with a hybrid system

description: Laser based analysis of artworks benefits from the development of hybrid instruments where a single laser source serves to excite fluorescence, Raman and laser induced breakdown spectroscopy (LIBS) signals. Laser induced fluorescence (LIF) and Raman spectra provide information at the molecular level, while LIBS serves for identifying the elemental composition of the substrate under consideration. Studies using several excitation wavelengths on different types of materials and substrates help to develop and establish these hybrid systems for the conservation of artworks.
DOI: 10.6073/pasta/509a82d7569257a961e66d06257520c9
title: Flashiness of urban and desert streams in arid Arizona watersheds (2003-2016)

description: There is general consensus that urbanization results in dramatic changes in stream hydrology, such as higher peak flows and increased flashiness (the rate at which water levels rise and fall). However, this has not been thoroughly assessed for aridlands, which are characterized by these very same hydrograph properties. This study analyzed streamflow records from 19 watersheds of central Arizona, USA to determine how hydrograph characteristics varied with urban development. This study evaluated influences on streamflow regime metrics calculated from daily and sub-daily flow data using linear mixed effects models, which factored in imperviousness along with other watershed characteristics. Results indicate that flashiness, coefficient of variation, zero flow days, and hydrograph rise and fall rates decreased with extent of imperviousness, which is the opposite pattern to that observed in previous studies predominately in humid regions. Engineered retention basins are one explanation for this observation, though novel urban sources of dry weather flows are likely also playing a role. This study also identified strong relationships between these hydrologic metrics and mean area-weighted discharge, watershed area, and annual precipitation. As in more humid systems, more high flow events in the urban desert streams compared to non-urban desert streams were observed. However, this was only at the lower flood threshold, and there was not an increase in larger floods with urban development. Overall, the urban stream syndrome manifests differently in this arid system: urbanization increases water retention and leads to less variable flows in stream ecosystems. Data and analysis code are included with this data set.
DOI: 10.25386/genetics.9767519
title: Supplemental Material for Kottler et al., 2019

description: Figure S1 presents the results of the RAD-sequencing analysis. Figure S2 shows the analysis of <i>G. affinis </i>and <i>G. holbrooki </i>pooled-sequencing reads aligned to the genome of <i>X. maculatus </i>using 10 kb windows. Figure S3 represents a molecular phylogeny of fish <i>sox9</i>. Figure S4 are alignments of male <i>G. holbrooki </i>and <i>G. affinis </i><i>gipc1</i>and <i>sox9b </i>alleles and protein sequences. Figure S5 are multiple species alignments of Gipc1 and Sox9 protein sequences. Figure S6 contains PCR results demonstrating that <i>sox9bY </i>was generated by allelic diversification. Figure S7 contains pictures of melanic and non-melanic <i>G. holbrooki</i>. Table S1 gives information on the fish used for pool sequencing. Table S2 presents the results of the allele-specific PCRs. Table S3 contains the annotated loci within the 100 kb windows with the highest density of sex-specific SNPs. Table S4 contains the sex chromosome genotypes of F<sub>1 </sub>fish (pedigree WLC20074) from a cross between a <i>G. affinis </i>female (WLC1313) and a <i>G. holbrooki </i>male (WLC2514) determined by PCR. Table S5 gives information on the number of offspring of non-melanic females and non-melanic males derived from melanic strains.
DOI: 10.25386/genetics.9767519.v1
title: Supplemental Material for Kottler et al., 2019

description: Figure S1 presents the results of the RAD-sequencing analysis. Figure S2 shows the analysis of <i>G. affinis </i>and <i>G. holbrooki </i>pooled-sequencing reads aligned to the genome of <i>X. maculatus </i>using 10 kb windows. Figure S3 represents a molecular phylogeny of fish <i>sox9</i>. Figure S4 are alignments of male <i>G. holbrooki </i>and <i>G. affinis </i><i>gipc1</i>and <i>sox9b </i>alleles and protein sequences. Figure S5 are multiple species alignments of Gipc1 and Sox9 protein sequences. Figure S6 contains PCR results demonstrating that <i>sox9bY </i>was generated by allelic diversification. Figure S7 contains pictures of melanic and non-melanic <i>G. holbrooki</i>. Table S1 gives information on the fish used for pool sequencing. Table S2 presents the results of the allele-specific PCRs. Table S3 contains the annotated loci within the 100 kb windows with the highest density of sex-specific SNPs. Table S4 contains the sex chromosome genotypes of F<sub>1 </sub>fish (pedigree WLC20074) from a cross between a <i>G. affinis </i>female (WLC1313) and a <i>G. holbrooki </i>male (WLC2514) determined by PCR. Table S5 gives information on the number of offspring of non-melanic females and non-melanic males derived from melanic strains.
DOI: 10.5281/zenodo.3532901
title: Example Photon raytracing openPMD data

description: This is an example datafile in hdf (h5) format, complying to the openPMD domain extension for photon raytracing simulations, as defined in: https://github.com/PaNOSC-ViNYL/openPMD-standard/blob/latest/EXT_PRAYTRACE.md . The dataset was created with the provided script generate_data.py and presents an example output file. This dataset is part of the Deliverable D5.1 in Workpackage 5 (Virtual Neutron and X-ray Laboratory) of the Photon and Neutron Open Science Cloud (PaNOSC). This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No. 823852.
DOI: 10.5281/zenodo.3532902
title: Example Photon raytracing openPMD data

description: This is an example datafile in hdf (h5) format, complying to the openPMD domain extension for photon raytracing simulations, as defined in: https://github.com/PaNOSC-ViNYL/openPMD-standard/blob/latest/EXT_PRAYTRACE.md . The dataset was created with the provided script generate_data.py and presents an example output file. This dataset is part of the Deliverable D5.1 in Workpackage 5 (Virtual Neutron and X-ray Laboratory) of the Photon and Neutron Open Science Cloud (PaNOSC). This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No. 823852.
DOI: 10.5281/zenodo.3533335
title: COMP6 (QCArchive View Formatted)

description: Data curated by the QCArchive team, originally sourced from https://github.com/isayev/COMP6. Reference calculations are performed at the ωB97x/6-31g* level of theory. All molecules are neutral singlets. For more information, see http://qcarchive.molssi.org/apps/ml_datasets.
description: {"references": ["Smith, J. S.; Nebgen, B.; Lubbers, N.; Isayev, O. & Roitberg, A. E. Less is more: Sampling chemical space with active learning. J. Chem. Phys., 2018, 148, 241733. https://aip.scitation.org/doi/full/10.1063/1.5023802"]}
DOI: 10.15468/kielh9
title: The Odonata of Madagascar: Zygoptera- Only Lestes treatment

description: This dataset contains the digitized treatments in Plazi based on the original journal article Schmidt, E. (1951): The Odonata of Madagascar: Zygoptera- Only Lestes treatment. Memoires Institut scientifique Madagascar Serie A 6: 115-280, DOI: http://doi.org/10.5281/zenodo.3533122
DOI: 10.25345/c5mq1q
title: MassIVE MSV000084565 - GNPS_GC_Daldinia_Full_test_8nov19-1
title: experiments of volatile compounds from endophytic fungi from Costa Rica
DOI: 10.5281/zenodo.3533336
title: COMP6 (QCArchive View Formatted)

description: Data curated by the QCArchive team, originally sourced from https://github.com/isayev/COMP6. For more information, see http://qcarchive.molssi.org/apps/TODO.
DOI: 10.17632/gpdhvdf3xd.1
title: Raw and Processed Data

description: 2D image stacks of the volume presented in Fig. 5A are attached in three separate Supplementary Material files. “original.mha”, “deconv.mha” and “segmented.mha” stand for original, deconvoluted and segmented data sets. “.mha” extensions can be opened with free software, such as ITK or ImageJ
DOI: 10.17632/xvp68wsd2p.1
title: Aridification signatures from middle–late Eocene pollen indicate widespread drying across the Tibetan Plateau after 40 Ma

description: Raw pollen counts and full pollen diagram from the RZ section, Nangqian Basin, Tibet, China
DOI: 10.5281/zenodo.3533114
title: Xcompact3D: An open-source framework for solving turbulence problems on a Cartesian mesh

description: Contains figures used in + the data with scripts to generate figures for the manuscript (in preparation) Xcompact3D: An open-source framework for solving turbulence problems on a Cartesian mesh
DOI: 10.5281/zenodo.3533115
title: Xcompact3D: An open-source framework for solving turbulence problems on a Cartesian mesh

description: Contains figures used in + the data with scripts to generate figures for the manuscript (in preparation) Xcompact3D: An open-source framework for solving turbulence problems on a Cartesian mesh
DOI: 10.17632/9ccms3gnf6.1
title: Protein targets for lysine lactoylation