cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17617/3.3o
title: BVOCs measurements around the Arabian Peninsula (AQABA 2017)

description: Measurements of dimethyl sulfide (DMS), dimethyl sulfone (DMSO2) and methane sulfonamide (MSAM) during the Air Quality and Climate Change in the Arabian Basin (AQABA) which took place from end of June till end of August 2017.
DOI: 10.17617/3.3y
title: Paleolithic to Bronze Age Siberians reveal connections with First Americans and across Eurasia

description: The Lake Baikal region has been inhabited by modern humans since the Upper Paleolithic, though the precise history of its inhabitants over this long period is still largely unknown. Here we report genome-wide data from 19 Upper Paleolithic to Early Bronze Age individuals from this region. An Upper Paleolithic genome shows a direct link with the First Americans by sharing the admixed ancestry which gave rise to all non-Arctic Native Americans. We demonstrate the genomic transition between Early Neolithic and Bronze Age Baikal groups as the result of prolonged admixture throughout the eighth millennium BP. In addition, we detect genetic interactions with western Eurasian steppe populations and reconstruct Yersinia pestis genomes from two Early Bronze Age individuals without west Eurasian ancestry. Overall, our study demonstrates the most deeply divergent connection between Upper Paleolithic Siberians and First Americans and reveals high human and pathogen mobility across Eurasia during Bronze Age.
DOI: 10.17617/3.33
title: Science quality and the value of inventions (Replication files)

description: Despite decades of research, the relationship between the quality of science and the value of inventions has remained unclear. We present the result of a large-scale matching exercise between 4.8 million patent families and 43 million publication records. We find a strong positive relationship between the quality of the scientific contributions referenced in patents and the value of the respective inventions. We rank patents by the quality of the science to which they are linked. Strikingly, high-ranking patents are twice as valuable as low-ranking patents, which in turn are about as valuable as patents without a direct science link. We show this core result for various science quality and patent value measures. The effect of science quality on patent value remains relevant even when science is linked indirectly through other patents. Our findings imply that what is considered “excellent” within the science sector also leads to outstanding outcomes in the technological and commercial realms.
DOI: 10.17617/3.21
title: Specificity of resistance and geographic patterns of virulence in a vertebrate host-parasite system

description: Experimental data for 'Specificity of resistance and geographic patterns of virulence in a vertebrate host-parasite system' Piecyk et al., 2019, BMC Evolutionary Biology. The publication can be found at: https://bmcevolbiol.biomedcentral.com/articles/10.1186/s12862-019-1406-3
DOI: 10.21233/2wnw-ma74
title: Moninea testate amoebae surface sample dataset

description: Raw data for the Moninea testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.2y
title: Kinship-based social inequality in Bronze Age Europe

description: genotype file for 118 ancient individuals
DOI: 10.17617/3.2u
title: Raw data for "SIFT-MS optimization for atmospheric trace gas measurements at varying humidity"

description: This dataset contains raw data and evaluation R-scripts of a study optimizing a Syft Voice200ultra SIFT-MS (Syft Technologies Ltd., New Zealand) and comparing the optimized instrument to a PTR-QMS 500 (Ionicon, Austria) via calibrations at a range of humidities.
DOI: 10.17617/3.vuvyhx
title: NEChina_genotyping
DOI: 10.17617/3.7x
title: Scripts for: Permutation tests for hypothesis testing with animal social network data: problems and potential solutions
DOI: 10.17617/3.6u
title: synthetic nominal njaoamine I

description: NMR Data for the synthetic nominal njaoamine I with the alkyne at position C38-C39. 
https://doi.org/10.1021/jacs.1c07955

The natural product structure was since revised.
DOI: 10.17617/3.xqddqz
title: Climate model-informed deep learning of global soil moisture distribution - data
DOI: 10.17617/3.5y
title: Delhi size-resolved CCN, PBL and SD data in Raj et al. 2021

description: This collection contains data used in paper "Planetary boundary layer height modulates aerosol - water vapour interactions during winter in the megacity of Delhi" (Raj et al., 2021). For detailed description regarding the data please refer to the paper mentioned above.
File "AvgCCN.dat" contains campaign average of CCN properties measured in Delhi.
File "CCN.dat" contains the time series of CCN properties measured. Column 'H_BL' of that file contain errors, thus please do not use that column, see file "PBL.dat" instead.
File "PBL.dat" contains the time series of modelled planetary boundary layer height in Delhi during February to March 2018.
File "SD.dat" contains the time series of inverted size distribution data.
DOI: 10.17617/3.8y
title: Particle growth events and equivalent potential temperature at ATTO

description: This collection contains file "Theta.dat" with the time series of equivalent potential temperature and its anomaly at the ATTO (Amazon Tall Tower Observatory) site from January 2013 to September 2020. Furthermore, it contains file "Events.dat" with characteristics of 254 particle growth events from February 2014 to July 2020. The data are used in paper "Occurrence and growth of sub-50 nm aerosol particles in the Amazonian boundary layer" (Franco et al., 2022, ACPD, "https://doi.org/10.5194/acp-22-3469-2022"). When using the data, please also refer to that paper. See "Events_ReadMe.txt" and "Theta_ReadMe.txt" for further information.
DOI: 10.17617/3.1a
title: Raw data and scripts for "The potential impacts of the songbird trade on mixed-species flocking"

description: Raw data and R scripts to replicate the analyses conducted in Marthy & Farine 2018 Biological Conservation https://doi.org/10.1016/j.biocon.2018.04.015. Data include mixed-species flocking co-occurrences from two survey periods: 1997 and 2016. Data were collected from Sumatra, Indonesia.
DOI: 10.17617/3.1q
title: MagIC Jupiter

description: The collections stores simulation results from the MHD code MagIC and related analysis software. 
For paper Wicht et al., JGR planets, 2018, the matlab package MatlabSDCR has been used and the two data G-file G_a60.* and G_1.jupModelV.
For paper Wicht et al., GRL, 2018, the matlab package MatlabHeating has been used.
DOI: 10.17617/3.25yyfa
title: Maslowski et al. (2018)

description: Raw data + analysis script for 'Listening to yourself is special: Evidence from global speech rate tracking'
DOI: 10.17617/3.12
title: Academic Visibility: gender bias in participation during academic seminars (Carter et al. 2017)

description: Data files presenting (i) observations of academic seminars on gender composition of audience and gender of persons asking questions and (ii) survey data of academics on their experience of academic seminars. The data are analyzed in Carter et al. (2017 preprint) Women's visibility in academic seminars: women ask fewer question than men. The data are made available under the Open Data Commons Attribution License: https://opendatacommons.org/licenses/by/1.0/ For attribution, please cite the original publication reporting the first set of analyses (listed above).
DOI: 10.17617/3.5evxqf
title: Human genetic data for: "Human mobility at Tell Atchana (Alalakh)"

description: 1240K data in eigenstrat format for 11 individuals reported in 'Human mobility at Tell Atchana (Alalakh), Hatay, Turkey during the 2nd millennium BC: integration of isotopic and genomic evidence' (Ingman, Eisenmann et al., 2021)
DOI: 10.17617/3.iebhsi
title: Vowel Segments Selected for Experiments
DOI: 10.17617/3.5z
title: Gene expression modification by an autosomal inversion associated with three male mating morphs

description: Raw data files and scripts for "Gene expression modification by an autosomal inversion associated with three male mating morphs".
Ruff (Philomachus pugnax)
DOI: 10.17617/3.qcyj8d
title: Saccharomyces cerevisiae mutant

description: Acquisition: Brightfield and fluorescence stains DAPI, Cy3 and GFP 630x. Zeiss
Axiovert 200 M, camera AxioCamHR, software Axiovision v4.7.1

&lt;img src="http://colab.mpdl.mpg.de/mw010/images/5/5e/MPIB_logo.jpg" alt="MPIBio logo"&gt;
DOI: 10.17617/3.ugz6yk
title: Weaker cooling by aerosols due to dust-pollution interactions - simulation data
DOI: 10.17617/3.yjcq5s
title: Differentiation of Blackbox Combinatorial Solvers

description: Datasets used in Vlastelica, Marin, et al. "Differentiation of Blackbox Combinatorial Solvers" ICLR 2020. If you use these datasets in your work, please cite the paper:
@incollection{VlastelicaEtal2020:BBoxSolvers,
 title = {Differentiation of Blackbox Combinatorial Solvers},
 author = {Vlastelica, Marin and Paulus, Anselm and Musil, V{\'{\i}}t and Martius, Georg and Rol{\'{\i}}nek, Michal},
 booktitle = {International Conference on Learning Representations},
 series = {ICLR'20},
 year = {2020},
 url = {https://openreview.net/forum?id=BkevoJSYPB}
}
DOI: 10.17617/3.3w
title: The Kinetic Energy Budget of the Atmosphere (KEBA) model 1.0

description: This collection contains supplemental material: An Excel spreadsheet implementation of the KEBA model including three examples of its application as well as a brief, 1 page users guide.
DOI: 10.17617/3.3t
title: Structural elucidation of Dendryphiellones A-D

description: This item contains the raw NMR data for 4 new compounds (Dendryphiellones A-D) isolated from the algicolous fungi Paradendryphiella salina. These compounds possess quorum quenching activities and inhibited the quorum sensing type A2 of pathogen Pseudomonas aeruginosa.
DOI: 10.17617/3.40
title: Mainye et al - SILAC data pheromone response

description: Contains raw and processed data from SILAC-proteomics data presented in Figure 1
DOI: 10.17617/3.1z1qui
title: Data for: "Genomic history of Anatolia, Northern Levant and Southern Caucasus"

description: eigenstrat and annotation files
DOI: 10.17617/3.2i
title: Saccharomyces paradoxus sampling, genotype, and phenotype data from Nehmten Forest, Germany

description: We compared the sampling success and biases of two sampling strategies for isolating Saccharomyces yeasts from natural substrates. We attempted to isolate S. paradoxus from leaf litter and soil from a forest in northern Germany using a direct plating method and an enrichment method. The data in this collection include our sampling success, the identities of isolated yeast species, and genotype and phenotype data for the S. paradoxus we found.
DOI: 10.17617/3.2r
title: Data from "The default-mode network represents aesthetic appeal that generalizes across visual domains"

description: Dataset for
Vessel, E.A., Isik, A.I., Belfi, A.M., Stahl, J.L., Starr, G.G. (2019). The default-mode network represents aesthetic appeal that generalizes across visual domains. PNAS, in press.
DOI: 10.17617/3.3c
title: Data from: Sexual communication of Spodoptera frugiperda from West Africa: Adaptation of an invasive species and implications for pest management

description: Data for EAG recordings, genotyping, mating time observations, pheromone analysis
DOI: 10.21233/w9ha-v787
title: Grand Traverse Bay testate amoebae surface sample dataset

description: Raw data for the Grand Traverse Bay testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.2d
title: Short-term forecasting of regional biospheric CO2 fluxes in Europe using a light-use-efficiency model - Model code and output

description: This file contains the R code for a forecast version of VPRM model. The detail description can be found in the Readme.txt in the file.
DOI: 10.17617/3.kiegou
title: Direct radiative effect of dust-pollution interactions - simulation data

description: Simulation data for Klingmüller et al., Atmos. Chem. Phys., https://doi.org/10.5194/acp-19-7397-2019
DOI: 10.17617/3.6s
title: Magnetic Resonance Spectroscopy: In vivo and simulated spectra for fitting software validation

description: In this collection we provide the data connected to the following publication:

ProFit-1D - a 1-D fitting software and open-source validation datasets
Tamas Borbath1,2*, Saipavitra Murali-Manohar1,2 , Johanna Dorst1,3, Andrew Martin Wright1,3, and Anke Henning1,4
Magnetic Resonance in Medicine, 2021

This data includes basis sets simulated and used for spectral fitting.
These were simulated for a semiLASER sequence, using real pulses for 9.4T. The following TE times are included: 24, 32, 40, 52, and 60ms.
Together with the metabolite simulations also acquired macromolecular basis sets are given.

The TestDataProFit_R3_new.tar includes all spectra used for validation of the fitting software.
This data set includes simulated spectra in the 11 Simulations folder. These simulations contain all the parameter variations described in the publication.
All other folders contain in vivo data, acquired with the aforementioned sequence in healthy volunteers at 9.4T. 
The volunteers are numbered through, and the different folders provide the spectra processed by different algorithmic steps. These can be used for test-retest validation.
DOI: 10.17617/3.6x
title: Sensor Patterns Dataset for Endowing a NAO Robot with Practical Social-Touch Perception

description: Click the "Versions" tab to view the latest version of the database, which will have the most current sensor pattern files and information available.

We encourage viewers to select the "Tree" view, rather than "Table" view, in order to see the files organized by their respective folders. We also provide a readme text file.
DOI: 10.17617/3.91
title: Flux chamber data and ancillary measurements from Pleistocene Park, Northeast Siberia

description: This collection contains observations on flux chamber measurements and ancillary environmental controls used within the context of the manuscript “Grazing enhances carbon cycling, but reduces methane emission during peak growing season in the Siberian Pleistocene Park tundra site” by W. Fischer et al., published in Biogeosciences in 2022.
DOI: 10.17617/3.1b
title: Lattenkamp_et_al_2018_JEB_DATA

description: Data for the publication of Lattenkamp et al (2018): Environmental acoustic cues guide the biosonar attention of a highly specialised echolocator, Journal of Experimental Biology (DOI: 10.1242/jeb.165696, WWW: http://jeb.biologists.org/content/early/2018/03/14/jeb.165696)
DOI: 10.17617/3.2czdfw
title: Ortiz et al_dataset

description: Evo-devo models of tooth development and the origin of hominoid molar diversity (Science Advances)
DOI: 10.17617/3.1i
title: Bannerman_et al. 2018

description: Somatic accumulation of GluA1-AMPA receptors leads to selective cognitive impairments in mice. In Frontieres Molecular Neuroscienc 11, 199. DOI: 10.3389/fnmol.2018.00199
DOI: 10.17617/3.11
title: SATIRE-M reconstruction of spectral solar irradiance over the Holocene.

description: This is the recommended solar forcing dataset for the PMIP4-CMIP6 tier-1 past1000 experiment.
DOI: 10.21233/n633-n589
title: Bean diatom surface sample dataset

description: Raw data for the Bean diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.i
title: HCCT2010

description: Data of the field campaign Hill Cap Cloud Thuringia (HCCT) 2010.
DOI: 10.17617/3.4q
title: What limits photosynthesis? Supplemental Material

description: This collection contains files associated with the publication "What limits photosynthesis? Identifying the thermodynamic constraints of the terrestrial biosphere within the Earth system"
DOI: 10.17617/3.5l
title: Data from: Inhibition of a nutritional endosymbiont by glyphosate abolishes mutualistic benefit on cuticle synthesis in Oryzaephilus surinamensis

description: functional data of amino acid synthesis, cuticular traits and symbiont titer for Candidatus Shikimatogenerans silvanidophilus OSUR symbiont contribution in O. surinamensis
DOI: 10.17617/3.hzfldm
title: The mechanoresponse of bone is closely related to the osteocyte lacunocanalicular network architecture

description: Raw and Primary Data
DOI: 10.17617/3.4v
title: A new glance at the chemosphere of macroalgal-bacterial interactions: In situ profiling of metabolites in symbiosis by mass spectrometry

description: Symbiosis is a dominant form of life that has been observed numerous times in marine ecosystems. For example, macroalgae coexist with bacteria that produce factors that promote algal growth and morphogenesis (AGMPFs). The green macroalga Ulva mutabilis (Chlorophyta) develops into a callus-like phenotype in the absence of its essential bacterial symbionts Roseovarius sp. MS2 and Maribacter sp. MS6. Spatially resolved studies are required to understand symbiont interactions at the microscale level. Therefore, we used high sensitivity, spatial resolution mass spectrometry and imaging to gain a new perspective on the mutualistic interactions between bacteria and macroalgae. 
Using atmospheric pressure scanning microprobe matrix-assisted laser desorption/ionisation high-resolution mass spectrometry (AP-SMALDI-HRMS), low- molecular-weight polar compounds were identified by comparative metabolomics in the chemosphere of Ulva. Choline (2-hydroxy-N,N,N-trimethylethan-1-aminium) was only determined in the alga grown under axenic conditions, whereas ectoine (1,4,5,6-tetrahydro-2-methyl-4-pyrimidinecarboxylic acid) was found in bacterial presence. Ectoine was used as a metabolic marker for localisation studies of Roseovarius sp. within the tripartite community because it was produced exclusively by these bacteria. By combining confocal laser scanning microscopy (cLSM) and AP-SMALDI-HRMS, we proved that Roseovarius sp. MS2 settled mainly in the rhizoidal zone (holdfast) of U. mutabilis. Our findings provide the fundament to decipher bacterial symbioses with multicellular hosts in aquatic ecosystems in an ecologically relevant context. As a versatile tool for microbiome research, the combined analysis of AP-SMALDI and cLSM imaging with resolution down to a single bacterial cell level can be easily applied to other microbial consortia and their hosts. The novelty of this contribution is the use of an in situ setup to resolve spatial distributions of metabolites and the identification of specific symbiotic bacteria, which is designed to avoid all types of external contamination.
DOI: 10.17617/3.5e
title: Neuroendocrine patterns underlying seasonal song and year-round territoriality in male black redstarts

description: Background: The connection between testosterone and territoriality in free-living songbirds has been well studied in a reproductive context, but less so outside the breeding season. To assess the effects of seasonal androgenic action on territorial behavior, we analyzed vocal and non-vocal territorial behavior in response to simulated territorial intrusions (STIs) during three life-cycle stages in free-living male black redstarts: breeding, molt and nonbreeding. Concurrently, we measured changes in circulating testosterone levels, as well as the mRNA expression of androgen and estrogen receptors and aromatase in the preoptic, hypothalamic and song control brain areas that are associated with social and vocal behaviors. 
Results: Territorial behavior and estrogen receptor expression in hypothalamic areas did not differ between stages. But plasma testosterone was higher during breeding than during the other stages, similar to androgen receptor and aromatase expression in the preoptic area. The expression of androgen receptors in the song control nucleus HVC was lower during molt when birds do not sing or sing rarely, but similar between the breeding and the nonbreeding stage. Nevertheless, some song spectral features and the song repertoire differed between breeding and nonbreeding. Territorial behavior and song rate correlated with the expression of steroid receptors in hypothalamic areas, and in the song control nucleus lMAN.
Conclusions: Our results demonstrate seasonal modulation of song, circulating testosterone levels, and brain sensitivity to androgens, but a year-round persistency of territorial behavior and estrogen receptor expression in all life-cycle stages. This suggests that seasonal variations in circulating testosterone concentrations and brain sensitivity to androgens is widely uncoupled from territorial behavior and song activity but might still affect song pattern. Our study contributes to the understanding of the complex comparative neuroendocrinology of song birds in the wild.
DOI: 10.17617/3.5c
title: Data from: "The impact of phase entrainment on auditory detection is highly variable: revisiting a key finding"
DOI: 10.17617/3.4f
title: Locus of Emotion in Music
DOI: 10.21233/0yj9-js82
title: Coixinets Fornells pollen surface sample dataset

description: Raw data for the Coixinets Fornells pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.78
title: Supplementary material and KEBA Model used in the evaluation of Kansas wind energy potential

description: This collection contains the the input data and Python code used to generate wind park and wind speed and park yield estimates from the simple KEBA (single boundary layer height) and modified KEBA models (different boundary layer heights for day and night times). The code also calculates park yields estimates using the common approach. The outputs from this model were used to create the plots for the manuscript in the title.
DOI: 10.17617/3.6o
title: Optical gain in solids after ultrafast strong-field excitation

description: This collection contains data related to the publication "Optical gain in solids after ultrafast strong-field excitation" by M. Qasim, D. A. Zimin, and V. S. Yakovlev
DOI: 10.17617/3.61
title: Data for Paper "CYK-1/Formin activation in cortical RhoA signaling centers promotes organismal left–right symmetry breaking"
DOI: 10.17617/3.63
title: Data supporting the plots in the article "Dual-Comb Hyperspectral Digital Holography" by E. Vicentini, Z. Wang, K. Van Gasse, T.W. Hänsch, N. Picqué
DOI: 10.17617/3.89
title: Oxytocin receptors influence the development and maintenance of social behavior in zebrafish

description: Data depository for the Scientific Reports Paper titled as above by Gemmer et al., 2021
DOI: 10.17617/3.83
title: Blepharisma stoltei IES predictions and micronuclear genome assembly

description: BleTIES, 0.1.9
description: spoa, 4.0.3
DOI: 10.17617/3.lgzugl
title: Simulated Oral Microbiome Sequences for Taxonomic Classification Testing

description: This dataset accompanies the following manuscript on bioRxiv:

Velsko IM, Frantz LAF, Herbig A, Larson G, Warinner C. Selection of appropriate metagenome taxonomic classifiers for ancient microbiome research. BioRxiv BIORXIV/2018/260042