cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19447112
title: Figure datasets for "Deterministic Terahertz wave control in scattering media"

description: Figure data for: "Deterministic Terahertz wave control in scattering media" Vivek Kumar<sup>1</sup>, Vittorio Cecconi<sup>1</sup>, Luke Peters<sup>1</sup>, Jacopo Bertolotti<sup>2</sup>, Alessia Pasquazi<sup>1</sup>, Juan Sebastian Totero Gongora<sup>1</sup>, Marco Peccianti<sup>1,*</sup> <sup>1</sup> Emergent Photonics Lab (EPic), Department of Physics and Astronomy, University of Sussex, Brighton, BN1 9QH, U.K. <sup>2</sup> Department of Physics and Astronomy, University of Exeter, Exeter, Devon EX4 4QL, UK <sup>*</sup>m.peccianti@sussex.ac.uk Article DOI: <sub>https://doi.org/10.1021/acsphotonics.2c00061 </sub> <strong>Funding</strong> This project received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 Research and Innovation Programme Grant No. 725046. The authors acknowledge financial support from the (UK) Engineering and Physical Sciences Research Council (EPSRC), Grant Nos. EP/S001018/1 and EP/T00097X/1 and the Leverhulme Trust (Early Career Fellowship ECF-2020-537).
DOI: 10.6084/m9.figshare.19447112.v1
title: Figure datasets for "Deterministic Terahertz wave control in scattering media"

description: Figure data for: "Deterministic Terahertz wave control in scattering media" Vivek Kumar<sup>1</sup>, Vittorio Cecconi<sup>1</sup>, Luke Peters<sup>1</sup>, Jacopo Bertolotti<sup>2</sup>, Alessia Pasquazi<sup>1</sup>, Juan Sebastian Totero Gongora<sup>1</sup>, Marco Peccianti<sup>1,*</sup> <sup>1</sup> Emergent Photonics Lab (EPic), Department of Physics and Astronomy, University of Sussex, Brighton, BN1 9QH, U.K. <sup>2</sup> Department of Physics and Astronomy, University of Exeter, Exeter, Devon EX4 4QL, UK <sup>*</sup>m.peccianti@sussex.ac.uk Article DOI: <sub>https://doi.org/10.1021/acsphotonics.2c00061 </sub> <strong>Funding</strong> This project received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 Research and Innovation Programme Grant No. 725046. The authors acknowledge financial support from the (UK) Engineering and Physical Sciences Research Council (EPSRC), Grant Nos. EP/S001018/1 and EP/T00097X/1 and the Leverhulme Trust (Early Career Fellowship ECF-2020-537).
DOI: 10.5281/zenodo.6874249
title: Data from: Influence of the properties of different graphene-based nanomaterials dispersed in polycaprolactone membranes on astrocytic differentiation

description: <strong>Abstract</strong> Composites of polymer and graphene-based nanomaterials (GBNs) combine easy processing onto porous 3D membrane geometries due to the polymer and cellular differentiation stimuli due to GBNs fillers. Aimingto step forward to the clinical application of polymer/GBNs composites, this study performs a systematic and detailed comparative analysis of the influence of the properties of four different GBNs: i) graphene oxide obtained from graphite chemically processes (GO); ii) reduced graphene oxide (rGO); iii) multilayered graphene produced by mechanical exfoliation method (G<sub>mec</sub>); and iv) low-oxidized graphene via anodic exfoliation (G<sub>anodic</sub>); dispersed in polycaprolactone (PCL) porous membranes to induce astrocytic differentiation. PCL/GBN flat membranes were fabricated by phase inversion technique and broadly characterized in morphology and topography, chemical structure, hydrophilicity, protein adsorption, and electrical properties. Cellular assays with rat C6 glioma cells, as model for cell-specific astrocytes, were performed. Remarkably, low GBN loading (0.67 %wt.) caused an important difference in the response of the C6 differentiation among PCL/GBN membranes. PCL/rGO and PCL/GO membranes presented the highest biomolecule markers for astrocyte differentiation. Our results pointed to the chemical structural defects in rGO and GO nanomaterials and the protein adsorption mechanisms as the most plausible cause conferring distinctive properties to PCL/GBN membranes for the promotion of astrocytic differentiation. Overall, our systematic comparative study provides generalizable conclusions and new evidences to discern the role of GBNs features for future research on 3D PCL/graphene composite hollow fiber membranes for <em>in vitro</em>neural models.
description: M.M-O acknowledges the FPU Grant (19/02324) awarded by the Spanish Ministry of Science, Innovation and Universities.
DOI: 10.5281/zenodo.6874248
title: Data from: Influence of the properties of different graphene-based nanomaterials dispersed in polycaprolactone membranes on astrocytic differentiation

description: <strong>Abstract</strong> Composites of polymer and graphene-based nanomaterials (GBNs) combine easy processing onto porous 3D membrane geometries due to the polymer and cellular differentiation stimuli due to GBNs fillers. Aimingto step forward to the clinical application of polymer/GBNs composites, this study performs a systematic and detailed comparative analysis of the influence of the properties of four different GBNs: i) graphene oxide obtained from graphite chemically processes (GO); ii) reduced graphene oxide (rGO); iii) multilayered graphene produced by mechanical exfoliation method (G<sub>mec</sub>); and iv) low-oxidized graphene via anodic exfoliation (G<sub>anodic</sub>); dispersed in polycaprolactone (PCL) porous membranes to induce astrocytic differentiation. PCL/GBN flat membranes were fabricated by phase inversion technique and broadly characterized in morphology and topography, chemical structure, hydrophilicity, protein adsorption, and electrical properties. Cellular assays with rat C6 glioma cells, as model for cell-specific astrocytes, were performed. Remarkably, low GBN loading (0.67 %wt.) caused an important difference in the response of the C6 differentiation among PCL/GBN membranes. PCL/rGO and PCL/GO membranes presented the highest biomolecule markers for astrocyte differentiation. Our results pointed to the chemical structural defects in rGO and GO nanomaterials and the protein adsorption mechanisms as the most plausible cause conferring distinctive properties to PCL/GBN membranes for the promotion of astrocytic differentiation. Overall, our systematic comparative study provides generalizable conclusions and new evidences to discern the role of GBNs features for future research on 3D PCL/graphene composite hollow fiber membranes for <em>in vitro</em>neural models.
description: M.M-O acknowledges the FPU Grant (19/02324) awarded by the Spanish Ministry of Science, Innovation and Universities.
DOI: 10.17632/5s4pk4rj32.2
title: Distinct Non-Clock-Like Signatures of the Basal Cell Carcinomas from Three Sisters with a Lethal Gorlin-Goltz Syndrome

description: We identified the insertion mutation PTCH1 c.1341dupA (p. L448Tfs*49), which segregated with BCC phenotype and contributed to the death of two in four patients from a Chinese family with GS. Compared with adjacent non-cancerous tissues (ANCT), four second-hit mutations were found in four of the six pairs of BCC from three patients. Of note, somatic genomic alterations in all six BCC samples were mainly clustered into non-clock-like Signature 7 (ultraviolet mutagenesis) and 11 (related to certain alkylating agents). Both RNA-seq and quantitative RT-PCR confirmed that the mRNA levels of PTCH1 and its effector GLI1 were markedly upregulated in six pairs of BCC samples versus ANCT.
Supplementary Information:
Additional file 1. Somatic single nucleotide variant (SNV) sites in whole exome sequencing of matched BCC and ANCT.
Additional file 2. Somatic loss of heterozygosity (LOH) in whole exome sequencing of matched BCC and ANCT.
Additional file 3. RNAseq data of the six pairs of BCC from three patients.
DOI: 10.17632/rgr3tppk5r.1
title: Western Blot data

description:  Western Blot data for manuscript entitle "Dynamic regulation of P-TEFb by 7SK snRNP is integral to the DNA damage response to regulate chemotherapy sensitivity"
DOI: 10.17632/3vzfpggd9r.2
title:  CIRP overexpression

description: overexpression of CIRP and its mechanisms research
Cold inducible RNA-binding protein (CIRP) is a glycine-rich RNA-binding protein with an RNA recognition motif and a carboxyl-terminal domain. CIRP initially localized in the nucleus, under some stresses, especially cold stress, it can translocate to the cytoplasm and bind the 3’ regions of the target mRNA with its RNA-recognition motif, and then exerts an effect on regulating gene expression. CIRP expression in the brain is increased significantly under cold stress, and the upregulation of CIRP plays an important role on triggering the animal hibernation. These findings inspired the idea that highly expressed CIRP may induce neuroprotection. Our previous studies demonstrated that CIRP can inhibit neuron apoptosis, overexpressed CIRP under hypoxia can restore the proliferation of neuronal stem cells, suggesting a neuroprotective role of CIRP. We hypothesized that highly expressed intracellular CIRP with minimal extracellular distribution could achieve a most positive effect on neuroprotection. Then the pathway underlying intracellular CIRP expression may provide new clue for a practical neuroprotection protocol. CIRP overexpression was established on a glial cell line, SHG 44, through transfection of lentivirus with CIRP. 
. The effects of CIRP overexpression on the cell viability were evaluated by MTT assay after treatment with oxidation, hypoxia, neurotoxicity, and glucose deprivation. To explore the relationship between highly expressed CIRP and some neuroprotective factors, the mRNA expressions of these factors were analyzed by Real-time polymerase chain reaction. Then Double immunohistochemistry and western blot were used to determine the increased expressions.
DOI: 10.17632/zz3w96y3ks.1
title: Can possession of land rights affect women empowerment in Kenya?

description: This is data on how possession of land rights affects women's empowerment
DOI: 10.17632/y9j999yk25.1
title: Blind cavefish retain functional connectivity despite loss of retinal input

description: Sensory systems display remarkable plasticity and are under strong evolutionary selection. The Mexican cavefish, Astyanax mexicanus, consists of eyed river-dwelling surface populations, and multiple independent cave populations which have converged on eye loss, providing the opportunity to examine the evolution of sensory circuits in response to environmental perturbation. Functional analysis across multiple transgenic populations expressing GCaMP6s showed that functional connectivity of the optic tectum largely did not differ between populations, except for the selective loss of negatively correlated activity within the cavefish tectum, suggesting positively correlated neural activity is resistant to an evolved loss of input from the retina. Further, analysis of surface-cave hybrid fish reveals that changes in the tectum are genetically distinct from those encoding eye-loss. Together, these findings uncover the independent evolution of multiple components of the visual system and establish the use of functional imaging in A. mexicanus to study neural circuit evolution.

The uploaded data consists of .mat files containing time-lapse flourescence intensity data and related supplementary data, for experiments oultine in the associated article. Time-lapse images were collected on either a confocal Nikon A1 (light stimulus experiments) or two-photon Nikon A1R (spontaneous activity recordings). Following acquisition, time-lapse images were motion corrected using the "moco" plugin in ImageJ/FIJI. Following motion correction, time-lapse images were processed in MATLAB using the calcium imaging processing toolbox published in Romano et al., 2017 (DOI: 10.1371/journal.pcbi.1005526). Further details on the formatting of this dataset can be found in that publication.
DOI: 10.17632/rpkbfmr9kf.1
title: world agricultural competitiveness

description: The database contains agricultural competitiveness in 165 countries
DOI: 10.17632/ndystc5t45.1
title: HO-Diagram Data

description: Data and Calculation Details for paper submitted to Case Studies in Thermal Engineering: Pels Leusden, C., Universal graphical representation of combustion processes for hydrocarbon fuels
DOI: 10.17632/yb884jrj8z.1
title: HO-Diagram

description: HO Diagram as submitted to Case Studies in Thermal Engineering
Format: PDF for DIN A4 Paper
Remark: print without any size adaptation in order to have exact axis scales (enthalpy h: 1 MJ/m3 = 5 cm; air content l: 0,1 = 1,5cm)
DOI: 10.17632/cx6v6zkp49.1
title: Remote by Default 2

description: Supplementary material for the Remote by Default 2 study https://fundingawards.nihr.ac.uk/award/NIHR132807
DOI: 10.17632/58mjpm9mvb.1
title: Antigenic cartography using sera from sequence-confirmed SARS-CoV-2 variants of concern infections reveals antigenic divergence of Omicron.  van der Straten et al. 

description: Supplementary Table 1. Sociodemographics and clinical characteristics of all convalescent SARS-CoV-2 patients included in this study, related to Table 1
DOI: 10.17632/t4jwgn23tw.1
title: LINF_300023700

description: Dual activity adenylate kinase/ATPase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/m9nxh48npp.1
title: LINF_300024100

description: succinyl-coa:3-ketoacid-coenzyme a transferase-like protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/fzyv679kb7.1
title: LINF_300024900

description: intraflagellar transport (IFT) protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/jzrwdm3b87.1
title: LINF_300025400

description: GPI mannosyltransferase | GPI14
Leishmania infantum (strain JPCM5)
DOI: 10.17632/6rjzn5pnpf.1
title: The Supplemental information of the manuscript "The high relevance of 21DOF, (4AD + 17αOHP)/F, and 11DOF/17αOHP for newborn screening of 21 hydroxylase deficiency"

description: The dataset is supplemental information of our paper entitled "The high relevance of 21DOF, (4AD + 17αOHP)/F, and 11DOF/17αOHP for newborn screening of 21 hydroxylase deficiency."
DOI: 10.17632/pgcnwzk8mw.1
title: LINF_300024000

description: succinyl-CoA:3-ketoacid-coenzyme A transferase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/44fxxng896.5
title: STAT6  in mitochondrial outer membrane impairs mitochondrial fusion by inhibiting MFN2 dimerization

description: All raw data including original immunoblot, confocal images, and statistics  have been deposited.
DOI: 10.6084/m9.figshare.20348121
title: silicon_A766_tracto_1

description: There is an LFP file (.dat). Channels are all sorted from top to bottom. In info.mat there is the information about the pyramidal channel and the fs of the data, and in the mapsCh.csv, the second column indicates the shank to which each channel belongs (in this case, there is just one shank). In the events folder, manual ground truth (events_selected_manually.txt), and predictions for both the CNN12 and CNN32 can be found.
DOI: 10.6084/m9.figshare.20348121.v1
title: silicon_A766_tracto_1

description: There is an LFP file (.dat). Channels are all sorted from top to bottom. In info.mat there is the information about the pyramidal channel and the fs of the data, and in the mapsCh.csv, the second column indicates the shank to which each channel belongs (in this case, there is just one shank). In the events folder, manual ground truth (events_selected_manually.txt), and predictions for both the CNN12 and CNN32 can be found.
DOI: 10.6084/m9.figshare.20341422
title: Stingrays: no longer the silent residents of the sea

description: Press Release and additional multimedia for Fetterplace, L.C., Delgado Esteban, J.J., Pini-Fitzsimmons, J., Gaskell, J. and Wueringer, B.E. (2022), Evidence of sound production in wild stingrays. Ecology. Accepted Author Manuscript e3812. https://doi.org/10.1002/ecy.3812
DOI: 10.6084/m9.figshare.20341422.v4
title: Stingrays: no longer the silent residents of the sea

description: Press Release and additional multimedia for Fetterplace, L.C., Delgado Esteban, J.J., Pini-Fitzsimmons, J., Gaskell, J. and Wueringer, B.E. (2022), Evidence of sound production in wild stingrays. Ecology. Accepted Author Manuscript e3812. https://doi.org/10.1002/ecy.3812
DOI: 10.6084/m9.figshare.20348151.v1
title: silicon_A7_tracto_2

description: There is an LFP file (.dat). Channels are all sorted from top to bottom. In info.mat there is the information about the pyramidal channel and the fs of the data, and in the mapsCh.csv, the second column indicates the shank to which each channel belongs (in this case, there is just one shank). In the events folder, manual ground truth (events_selected_manually.txt), and predictions for both the CNN12 and CNN32 can be found.
DOI: 10.6084/m9.figshare.20348151
title: silicon_A7_tracto_2

description: There is an LFP file (.dat). Channels are all sorted from top to bottom. In info.mat there is the information about the pyramidal channel and the fs of the data, and in the mapsCh.csv, the second column indicates the shank to which each channel belongs (in this case, there is just one shank). In the events folder, manual ground truth (events_selected_manually.txt), and predictions for both the CNN12 and CNN32 can be found.
DOI: 10.6084/m9.figshare.20331378
title: Mutation Patterns of Resistance Genes for Macrolides, Aminoglycosides, and Rifampicin in Nontuberculous Mycobacteria Isolates from Kenya

description: Mutation patterns for rrsl, rrs, and rpoB genes in NTM
DOI: 10.6084/m9.figshare.20331378.v1
title: Mutation Patterns of Resistance Genes for Macrolides, Aminoglycosides, and Rifampicin in Nontuberculous Mycobacteria Isolates from Kenya

description: Mutation patterns for rrsl, rrs, and rpoB genes in NTM
DOI: 10.6084/m9.figshare.20348244
title: silicon_A845_tracto_3

description: There is an LFP file (.dat). Channels are all sorted from top to bottom. In info.mat there is the information about the pyramidal channel and the fs of the data, and in the mapsCh.csv, the second column indicates the shank to which each channel belongs (in this case, there is just one shank). In the events folder, manual ground truth (events_selected_manually.txt), and predictions for both the CNN12 and CNN32 can be found.
DOI: 10.6084/m9.figshare.20348244.v1
title: silicon_A845_tracto_3

description: There is an LFP file (.dat). Channels are all sorted from top to bottom. In info.mat there is the information about the pyramidal channel and the fs of the data, and in the mapsCh.csv, the second column indicates the shank to which each channel belongs (in this case, there is just one shank). In the events folder, manual ground truth (events_selected_manually.txt), and predictions for both the CNN12 and CNN32 can be found.
DOI: 10.6084/m9.figshare.20348256
title: Supplementary Material for: Reliability of Automatic Computer Vision-Based Assessment of Orofacial Kinematics for Telehealth Applications

description: <b><i>Introduction:</i></b> Telehealth/remote assessment using readily available 2D mobile cameras and deep learning-based analyses is rapidly becoming a viable option for detecting orofacial and speech impairments associated with neurological and neurodegenerative disease during telehealth practice. However, the psychometric properties (e.g., internal consistency and reliability) of kinematics obtained from these systems have not been established, which is a crucial next step before their clinical usability is established. <b><i>Methods:</i></b> Participants were assessed in lab using a 3 dimensional (3D)-capable camera and at home using a readily-available 2D camera in a tablet. Orofacial kinematics was estimated from videos using a deep facial landmark tracking model. Kinematic features quantified the clinically relevant constructs of velocity, range of motion, and lateralization. In lab, all participants performed the same oromotor task. At home, participants were split into two groups that each performed a variant of the in-lab task. We quantified within-assessment consistency (Cronbach’s α), reliability (intraclass correlation coefficient [ICC]), and fitted linear mixed-effects models to at-home data to capture individual-/task-dependent longitudinal trajectories. <b><i>Results:</i></b> Both in lab and at home, Cronbach’s α was typically high (&gt;0.80) and ICCs were often good (&gt;0.70). The linear mixed-effect models that best fit the longitudinal data were those that accounted for individual- or task-dependent effects. <b><i>Discussion:</i></b> Remotely gathered orofacial kinematics were as internally consistent and reliable as those gathered in a controlled laboratory setting using a high-performance 3D-capable camera and could additionally capture individual- or task-dependent changes over time. These results highlight the potential of remote assessment tools as digital biomarkers of disease status and progression and demonstrate their suitability for novel telehealth applications.
DOI: 10.5281/zenodo.6874414
title: Quality-assessed Antarctic coastline products

description: Radarsat-1 coastline products are quality-assessed and validated in this product.
DOI: 10.5281/zenodo.6874413
title: Quality-assessed Antarctic coastline products

description: Radarsat-1 coastline products are quality-assessed and validated in this product.
DOI: 10.24381/cds.b2f6f9f6
title: Crop productivity and evapotranspiration indicators from 2000 to present derived from satellite observations
DOI: 10.34740/kaggle/dsv/3968836
title: YouTube Daily
DOI: 10.5517/ccdc.csd.cc2bp6gq
title: CCDC 2165333: Experimental Crystal Structure Determination

description: Related Article: Yasunori Toda, Kayo Sato, Kensuke Sato, Kazuma Nagasaki, Hirotaka Nakajima, Ayaka Kikuchi, Kimiya Sukegawa, Hiroyuki Suga|2022|Org.Lett.|24|4739|doi:10.1021/acs.orglett.2c01682
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5519/qd.6g2p4nlu
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (6 records)
DOI: 10.6084/m9.figshare.19411187
title: Systematized literature review IA & Communication

description: A systematized literature review based on 243 articles about the impact of artificial intelligence on the Communication field (journalism, public sphere, platforms, ethics and education). Based on articles published in journals indexed in Web of Science and Scopus (2017-2021).
DOI: 10.6084/m9.figshare.19632762
title: Most cited articles

description: A systematized literature review based on 243 articles about the impact of artificial intelligence on the Communication field (journalism, public sphere, platforms, ethics and education). Based on articles published in journals indexed in Web of Science and Scopus (2017-2021).
DOI: 10.57745/zpzoaq/ykcequ
title: rpg_complete_2020_d14.zip

description: :unav
DOI: 10.57745/zpzoaq/uzhd64
title: rpg_complete_2020_d27.zip

description: :unav
DOI: 10.57745/zpzoaq/olpk6l
title: rpg_complete_2020_d50.zip

description: :unav
DOI: 10.57745/zpzoaq/e6vmua
title: rpg_complete_2020_d61.zip

description: :unav
DOI: 10.57745/zpzoaq/mhddfa
title: rpg_complete_2020_d76.zip

description: :unav
DOI: 10.6084/m9.figshare.20338041
title: Data for Wyka et al. "Anatomical acclimation of mature leaves to increased irradiance in sycamore maple (Acer pseudoplatanus L.)"

description: Data are organized into four groups of variables: 1) anatomy, 2) LMA and nitrogen, 3) chlorophyll fluorescence, 4) leaf abscission, each in a separate sheet. Treatment abbreviations: PRE – measurements taken prior to transfer to full sun; CONT – measurements on plants remaining at original growth irradiances, TRANS – measurements on plants that had been transferred to full sun.