cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28881788.v1
title: Supplementary Material for: The value of circulating tumor DNA in the prognostic diagnosis of bladder cancer: a systematic review and meta-analysis

description: Objective: The aim of this study was to systematically evaluate the clinical efficacy of ctDNA in the prognostic assessment of bladder cancer, and to provide a basis for its application in individualized treatment and risk stratification management.
Methods: Studies related to ctDNA in prognostic assessment of bladder cancer were screened by systematically searching PubMed, Cochrane Library, Web of Science, Willey library, CNKI and other databases, and the search was from inception to December 2024, and the data were extracted and analyzed by Meta-analysis. A random-effects model was used to calculate SEN, SPE, PLR, NLR, DOR, and AUC, and the heterogeneity among studies and publication bias were also assessed.
Results: A total of 9 papers were included, and the results showed that ctDNA testing had a SEN of 0.68 (95% CI: 0.54-0.78), SPE of 0.76 (95% CI: 0.51-0.90), and an AUC of 0.75 (95% CI: 0.71-0.79), suggesting that it has a moderate level of diagnostic efficacy in the assessment of prognosis in bladder cancer. PLR and NLR were 2.8 (95% CI: 1.24-6.35) and 0.43 (95% CI: 0.28-0.65), respectively, with a DOR of 6.56 (95% CI: 2.12-20.33).Fagan plot analysis showed that the posterior probability of a positive result rose to 74% and the posterior probability of a negative result decreased to 30% when the prior probability was 50%. Deeks funnel plot analysis showed no significant publication bias (P=0.24). However, inter-study heterogeneity was high (all I² values &gt;80%), which may have been influenced by factors such as assay technique, patient characteristics, and follow-up time.
Conclusion: ctDNA demonstrates some clinical application value in the prognostic assessment of bladder cancer, and can assist in predicting patient recurrence and survival. However, its independent predictive efficacy is not enough to replace traditional assessment methods. Future studies should aim to optimize the detection technology, unify the study design, expand the sample size, and combine multi-omics data for joint analysis, in order to further improve its potential application in the prognostic assessment of bladder cancer.
DOI: 10.6084/m9.figshare.12547934.v1
title: JVASP-38380 to JVASP-39088

description: JARVIS-DFT input/output files
DOI: 10.6084/m9.figshare.24511516.v1
title: Metaphlan estimated absolute counts

description: Per sample absolute species level count table as estimated via metaphlan
DOI: 10.6084/m9.figshare.28211510.v3
title: Yang et al.， 2025 的数据集，编译了锆石 U-Pb 年龄和 Hf 同位素数据集

description: 来自腾冲、拉萨、四部马苏和南强塘区块的岩浆锆石年龄 （ds01） 和 Hf 同位素数据 （ds02） 的汇编数据集，跨度为 300 至 100 马。本研究中使用的数据来自GEOROC数据库（https://georoc.mpch-mainz.gwdg.de/georoc/），西藏岩浆学数据库（Chapman & Kapp，2017）以及以前发表的文献。
DOI: 10.17632/5txdfwdypb
title: HRSBallast: A collection of high-resolution, scanned railway ballast samples

description: HRSBallast is a collection of high-resolution, scanned railway ballast samples obtained from both a field installation and from a local quarry. The samples represent a variety of geometric properties, particularly the extend of rounding owing to in-service conditions experienced and as a function of the track performance. HRSBallast serves as a reference dataset for granular media (GM) simulations utilizing DEM (discrete element method), degradation or wear modelling, digital assets for the creation of synthetic datasets for deep learning applications, embedded railway instrumentation and video games requiring high resolution geometry. The 108 digitized samples are provided in an STL (stereolithography) file format. Both the original resolution files are provided (HighRes.zip) alongside a decimated collection consisting of 1% of the number of points of the high resolution collection (LowRes.zip). 45 of the 108 scans samples represent the ballast samples collected from the field installation (15 samples each from three location). Each of the locations provided either angular, semi-angular of rounded ballast samples. These files are denoted as FA0-FA9 (field samples, angular), FB0-FB9 (field sample, semi-angular) and FC0-FC9 (field sample, rounded). The remaining 63 samples were collected from the fresh ballast samples. Three experiments consisting of 10 samples each were carried out that produced these digital models: + fresh ballast (M00-M09) subjected to 100,000 load cycles in the small-scale box test, scanned again after the test (M10-M19), + fresh ballast placed in a concrete mixer for 15 minutes (M0A-M0J) and subjected to 100,000 load cycles in the small-scale box test, scanned again after the test (M1A-M1J), and + fresh ballast placed in a concrete mixer for 30 minutes (M0K-M0T) and subjected to 100,000 load cycles in the small-scale box test, scanned again after the test (M1K-M1T). Note: an additional 3 files were created from ballast samples that fractured during testing. The mass, volume, surface area and vertex count of each is provided in the spreadsheet / CSV file together with the samples identification number (Ballast_properties.xlsx). A high-resolution photograph of each sample is provided (SamplePhotos.zip). List of files + Ballast_Properties.csv - 6 kb + Ballast_Properties.xlsx - 22 kb + HighRes.zip - 6.8 Gb + LowRes.zip - 66 Mb + SamplePhotos.zip - 320 Mb + scanning_process.MOV - 19 Mb
DOI: 10.6084/m9.figshare.4495634.v1
title: canada_tiles_metrics.sqlite

description: Data from the manuscript "Forest Connectivity Regions of Canada Using Circuit Theory and Image Analysis"<br>
DOI: 10.6084/m9.figshare.28102742.v1
title: Dataset on Religious-Based Family Management, Short-Term Vision, Uncontrolled Consumption, and Absolute Poverty in Low-Income Families in South Sulawesi, Indonesia

description: Survey results from 172 low-income families in South Sulawesi, Indonesia, are included in this dataset. Trained field officers used self-administered forms and standardized questions that were delivered through in-person interviews to conduct the survey. A Likert scale, with 1 denoting strongly disagree and 5 denoting strongly agree, was employed in the surveys. In accordance with the study's conceptual framework, the data seek to investigate the connections among four factors.<sub>Key Variables:</sub><sub>RBFM: Religious-Based Family Management practices.</sub><sub>STV: Short-term Vision in financial decision-making.</sub><sub>UC: Patterns of Uncontrolled Consumption.</sub><sub>AP: Indicators of Absolute Poverty levels.</sub>Data Format: SPSS (.sav)Intended Use: Statistical analysis, hypothesis testing, and model validation in poverty studies and social behavior research.Access Rights: The dataset is openly accessible under a Creative Commons Attribution License (CC BY 4.0) for scholarly and research purposes.Please get in touch with the respective author with any additional questions.
DOI: 10.6084/m9.figshare.20931643.v1
title: Supplementary Material for: Neonatal anoxia impacts rats' maternal behavior and offspring development due to ultrasonic vocalization's impairment

description: Hypoxic-ischemic encephalopathy is a severe clinical condition, among others, affecting the brain after offspring exposure to neonatal anoxia, which causes persistent sensorimotor and cognitive deficits. During peripartum, maternal behaviors are crucial for the healthy development of the offspring. In rats, the vocalization of newborns, around 40 kHz, corresponds to separation calls that encourage their mothers to retrieve them. Alterations in this pattern affect the maternal behavior addressed to the offspring. This study aimed to evaluate the maternal behavior of primiparous rats whose offspring were exposed to neonatal Anoxia in P2 (postpartum day) during the lactation period, to assess mother-pup interactions through the pups' vocalization from P3 to P18. It also intends to quantify eventual neuronal alterations in the mothers' medial preoptic area (MPOA) after the last weaning (P21) through FOS protein expression. Anoxia offspring were found to reduce maternal behaviors towards them, increased frequency of separation calls in the male anoxia group, and reduced vocalization rate in the female anoxia group compared to their respective controls. Body weight gain reduction of males' and females' anoxia was observed. We concluded that anoxia exerts deleterious effects on the vocalization patterns of the pups, with sex differences that alter maternal behavior towards them. Impaired USV makes an additional negative impact on the already noxious effects of neonatal anoxia. Understanding those phenomena apply/contributes to guiding procedures and strategies to mitigate the deleterious outcomes and orient research concerning the complexity of neonatal anoxia events and the influence of maternal care quality concerning the pups, which should also be considered sex differences.
DOI: 10.6084/m9.figshare.24314020.v1
title: Pardosa pseudoannulata genome assembly and annotation

description: The genome assembly and annotation of the spider Pardosa pseudoannulata with data from PacBio and Hi-C sequencing.
DOI: 10.6084/m9.figshare.12628079.v1
title: Sex differences in cooperation - Buryats of Shouthern Siberia

description: This dataset supports the findings highlighted in the paper "Sex differences in cooperativeness - an experiment with Buryats in Southern Siberia" by VV Rostovtseva, FJ Weissing, AA Mezentseva, & ML Butovskaya
DOI: 10.6084/m9.figshare.14196938.v1
title: Source data file for Nature communications

description: Source data files underlying figure 2-4 in our paper
DOI: 10.6084/m9.figshare.24865845.v2
title: In-Depth Interviews and Focus Group Discussions (IDEaL and ENGAGE)

description: Data reported in mansuscript 'Core components of male-specific person-centered care: a qualitative analysis from client and healthcare worker perspectives in Malawi.' Qualitative interview transcripts for both male client in-depth interviews and focus group discussions with participating healthcare workers.
DOI: 10.6084/m9.figshare.28838315.v1
title: CVS rt-TDDFT

description: first and last configuration for rt-TDDFT Ehrenfest dynamics rt-TDDFT for CsV3Sb5
DOI: 10.6084/m9.figshare.24906300.v3
title: YSU-an EEG dataset for studying asynchronous SSVEP-BCI

description: Update later.<br><b>Edit history:</b>v3 - [Channel Loc.xlsx] was reuploaded to correct the mismatches between indexes and channel names.<br><br>
DOI: 10.17632/5xjxxmncth
title: (Dataset) Palliative Care in Ecuador: Scoping review

description: This dataset contains a Scoping Review on palliative care in Ecuador.
DOI: 10.6084/m9.figshare.16456011.v2
title: D2D_Coding.pdf

description: Algorithm and Performance Analysis of Radio ResourceAllocation in Device-to-Device (D2D) Communications for 5GNetworks
DOI: 10.6084/m9.figshare.13725718.v1
title: Data

description: Data from a paper entitled "Reliability and Validity Analysis of Sports Injury Anxiety Scale for Chinese Student Athletes"
DOI: 10.6084/m9.figshare.20230977.v1
title: Cadophora species from marine glaciers in the Qinghai-Tibet Plateau

description: DNA alignment sequences for the construction of phylogenetic trees
DOI: 10.6084/m9.figshare.21792788.v1
title: original dataset of BF-SIM

description: Raw data and reconstructed SR images of BF-SIM
DOI: 10.17632/3pwm9yvygs
title: Eye tracking data of white individuals' movements when looking at bowel cancer promotion messages

description: While promotional visual imagery can significantly increase CRC screening, the specific impact of messages and imagery among ethnic minorities and individuals from socioeconomically deprived communities needs further exploration. This study informed the development of optimized bowel cancer screening promotion images tailored at the wider audience, South Asian community in the UK, in which screening uptake is only 33% and in India where both awareness and organized screening programs from colorectal cancer is scarce. The research aims to bridge the gap between existing visual health communication methods and their effectiveness among diverse populations, ultimately working to reduce screening disparities and improve early detection rates.
DOI: 10.17632/29zff9v9fv
title: Empagliflozin Restores Cardiac Metabolism and Suppresses Immune Activation in Acute Myocardial Infarction

description: Background and aims: Empagliflozin (EMPA), a sodium-glucose co-transporter 2 (SGLT2) inhibitor, is cardioprotective in acute myocardial infarction (AMI) including fewer hospitalizations for heart failure. However, the underlying metabolic and immunomodulatory mechanisms remain incompletely characterized. This study investigates the metabolic effects of EMPA in diabetic and non-diabetic conditions, as well as on AMI-induced immune responses.
Methods: C57BL/6J mice were fed on Western diet (WD) to induce hyperglycemia, followed by treatment with EMPA (10 mg/kg/day) for six weeks and subsequent AMI (30 min of ischemia / 2 hours of reperfusion). Infarcted hearts were subjected to metabolomic and lipidomic analyses. Cardiac necrosis and immune cell abundance were assessed 7 days post-AMI in blood, spleen, and cardiac tissue with Hematoxylin/Eosin (H/E) staining and flow cytometry, respectively.
Results: Besides the already established effects of EMPA in lowering body weight, blood glucose and cholesterol levels, we found that it fully restored cardiac ATP and ketone body levels in mice with AMI. Additionally, it suppressed accumulation of UDP-glucose and GM3 gangliosides. Notably, the effect of EMPA on cardiac metabolome and lipidome was independent of hyperglycemia. Furthermore, EMPA reduced leukocytes in spleen (15.42 ± 2.60% vs. 21.20 ± 4.45%) and cardiac tissue (15.94 ± 5.93% vs. 32.42 ± 8.77%) and suppressed cardiac necrosis 7 days post-AMI (11.15 ± 3.42% vs. 21.74 ± 3.30%).
Conclusions: EMPA restores cardiac energetics and attenuates the metabolic complications of AMI, independent of diabetes. These metabolic effects correlate with lower immune cell infiltration and cardiac necrosis, providing long-term benefits in AMI.
Keywords: Empagliflozin, type 2 diabetes, acute myocardial infarction, metabolomics, lipidomics, inflammation.
DOI: 10.6084/m9.figshare.16864348.v1
title: Fig 3e ddPCR raw data

description: Raw ddPCR data (.qlb) from Figure 3e
DOI: 10.6084/m9.figshare.6714206.v1
title: Sensitivity analysis for missing data in cost-effectiveness analysis: Stata code

description: Stata do-files and data to support tutorial "Sensitivity Analysis for Not-at-Random Missing Data in Trial-Based Cost-Effectiveness Analysis" (Leurent, B. et al. PharmacoEconomics (2018) 36: 889).Do-files should be similar to the code provided in the article's supplementary material.Dataset based on 10 Top Tips trial, but modified to preserve confidentiality. Results will differ from those published.<br>
DOI: 10.17605/osf.io/v69tf
title: COVID-19 Pandemic and Postpartum Mental Health: Data From a Two-Year Study in Argentina

description: Data derived from a repeated cross-sectional study in Argentina during the COVID-19 pandemic. The data were collected during the three waves of COVID-19: May-July/2020 (n=319), April-August/2021 (n=340), and December/2021-March/2022 (n=341). More information about the methodology is available at https://doi.org/10.1101/2023.10.30.23297772
DOI: 10.17608/k6.auckland.22320916.v2
title: ACODE 88 Pre-workshop survey results

description: The ACODE 88 workshop was held on Thursday 2 March 2023 with 241 registrations from 31 institutions. Attendees represented a broad range of roles from across the sector, including teaching academic staff, educational designers and technologists, directors of learning and teaching, and learning support specialist staff. The data presented here are the results from the pre-workshop survey completed by ACODE institutional representatives to determine the current state of decision-making, understanding, and actions on the use of AI. The survey received 34 responses from Australasian higher education institutions.
DOI: 10.6084/m9.figshare.12401318.v1
title: FlaiveEtAl_JNeurophys2020_Values.xlsx

description: This file contains the numerical values underlying the figures in Flaive et al. J Neurophysiol 2020 (https://doi.org/10.1152/jn.00179.2020)
DOI: 10.6084/m9.figshare.5624836.v2
title: In mammalian skeletal muscle, phosphorylation of TOMM22 by protein kinase CSNK2/CK2 controls mitophagy

description: In yeast, Tom22, the central component of the TOMM (translocase of outer mitochondrial membrane) receptor complex, is responsible for the recognition and translocation of synthesized mitochondrial precursor proteins, and its protein kinase CK2-dependent phosphorylation is mandatory for TOMM complex biogenesis and proper mitochondrial protein import. In mammals, the biological function of protein kinase CSNK2/CK2 remains vastly elusive and it is unknown whether CSNK2-dependent phosphorylation of TOMM protein subunits has a similar role as that in yeast. To address this issue, we used a skeletal muscle-specific <i>Csnk2b</i>/<i>Ck2β</i>-conditional knockout (cKO) mouse model. Phenotypically, these skeletal muscle <i>Csnk2b</i> cKO mice showed reduced muscle strength and abnormal metabolic activity of mainly oxidative muscle fibers, which point towards mitochondrial dysfunction. Enzymatically, active muscle lysates from skeletal muscle <i>Csnk2b</i> cKO mice phosphorylate murine TOMM22, the mammalian ortholog of yeast Tom22, to a lower extent than lysates prepared from controls. Mechanistically, CSNK2-mediated phosphorylation of TOMM22 changes its binding affinity for mitochondrial precursor proteins. However, in contrast to yeast, mitochondrial protein import seems not to be affected in vitro using mitochondria isolated from muscles of skeletal muscle <i>Csnk2b</i> cKO mice. PINK1, a mitochondrial health sensor that undergoes constitutive import under physiological conditions, accumulates within skeletal muscle <i>Csnk2b</i> cKO fibers and labels abnormal mitochondria for removal by mitophagy as demonstrated by the appearance of mitochondria-containing autophagosomes through electron microscopy. Mitophagy can be normalized by either introduction of a phosphomimetic TOMM22 mutant in cultured myotubes, or by in vivo electroporation of phosphomimetic <i>Tomm22</i> into muscles of mice. Importantly, transfection of the phosphomimetic <i>Tomm22</i> mutant in muscle cells with ablated <i>Csnk2b</i> restored their oxygen consumption rate comparable to wild-type levels. In sum, our data show that mammalian CSNK2-dependent phosphorylation of TOMM22 is a critical switch for mitophagy and reveal CSNK2-dependent physiological implications on metabolism, muscle integrity and behavior.
DOI: 10.6084/m9.figshare.c.3769724_d10.v1
title: Additional file 19: of Transcriptome analysis of smut fungi reveals widespread intergenic transcription and conserved antisense transcript expression

description: S. reilianum detected antisense and putative orthologs with detected antisense. (XLSX 351 kb)
DOI: 10.6084/m9.figshare.7035815.v1
title: File F1 from Halloween genes in panarthropods and the evolution of the early moulting pathway in Ecdysozoa

description: List of species names and genes with NCBI or UniProt accession number used for phylogenetic analyses of <i>neverland</i>, Halloween genes, nuclear receptor genes, Early genes, and <i>CYP18A1</i>. Identified sequences of <i>Euperipatoides rowelli</i> (Onychophora) and <i>Hypsibius exemplaris</i> (Tardigrada) are included on table 7 and 8, respectively.
DOI: 10.6084/m9.figshare.14319758.v1
title: Raw data files

description: Raw data tables and the statistical analysis applied to the data. Files are labeled by figure number. Within each file, each table and linked graph and analysis is annotated by figure number and panel letter. All files are generated in graphpad prism.
DOI: 10.6084/m9.figshare.17080724.v1
title: UTAUT and Purchase Decision Data Collection

description: Dataset of data collection for exploring UTAUT in customer Purchase Decision (Online Ticket Purchasing in Indonesia during COVID-19) research instrument
DOI: 10.6084/m9.figshare.22274581.v1
title: Supplementary Material for: Fetal High-Risk APOL1 Genotype Increases Risk for Small for Gestational Age in Term Infants Affected by Preeclampsia.

description: Background: Hypertensive disorders of pregnancy cause fetal growth restriction and increased maternal morbidity and mortality, especially in women of African ancestry. Recently, preeclampsia (PE) risk was linked with African polymorphisms in the Apolipoprotein L1 (APOL1) gene. Objectives: We assessed the effect of APOL1 genotype on fetal growth outcomes of pregnancies with and without PE. Method: We conducted an unmatched case-control study of 1,358 mother-infant pairs from two independent cohorts of Black women. Results: Term PE cases with high-risk APOL1 genotypes were more likely to be small for gestational age compared to APOL1 low-risk term cases or APOL1 high-risk controls (odds ratios of 2.8 and 5.5, respectively). Among preterm cases, APOL1 genotype was associated with PE, significant for both recessive and additive inheritance patterns. Conclusions: Fetal APOL1 genotype was associated with PE in preterm infants but altered fetal growth in term infants indicating APOL1 genotype impacts conditions associated with placental insufficiency.
DOI: 10.15468/dl.9cbgzq
title: Occurrence Download

description: A dataset containing 5037 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Vitex rotundifolia L.f.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5037 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013451-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25997254.v1
title: Listed company data as of 2020

description: Related data of Chinese listed companies from 2007 to 2020
DOI: 10.6084/m9.figshare.15067509.v1
title: Users Data

description: This dataset includes the account information of 1,872,677 Goodreads users. The information has been anonymized (for more detail please take a look at our paper). The details for each individual includes:<br>* Anonymized user ID<br>* Friend count (number)<br>* Group count (number)<br>* Review count (number)<br>* Detected Binary Gender (based on name)<br>* Detected country-level location (based on the location provided by the user. We have removed more detailed location indicators to preserve the anonymity of users)<br>* Anonymized list of favorite authors <br>* Numerical length of the user’s about section <br>* Joined date (the year and month which the user joined the website)<br>* Last active date (the year and month the user was last active. As the dataset was collected in 2020, we do not know if the users were active after the date of collection)<br>Please cite the corresponding paper:Nazanin Sabri, Ingmar Weber: A Global Book Reading Dataset. MDPI Data, 2021.