cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ucua52
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is Naturalis Biodiversity Center (NL) - Chelicerata and Myriapoda",
 "TaxonKey is Theraphosa Thorell, 1870"
 ]
}

 The dataset's 2 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041126-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tr4sph
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Uruguay",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lycalopex gymnocercus (G.Fischer, 1814)"
 ]
}

 The dataset includes 144 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251864-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t2pfhj
title: Occurrence Download

description: A dataset containing 783 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taphozous nudiventris Cretzschmar, 1826"
 ]
}

 The dataset includes 783 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001782-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4r77mn
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Asplenium scolopendrium subsp. antri-jovis (Kümmerle) Brownsey & Jermy"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251873-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.de9awe
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Plesiodryas albonotata",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 22 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080581-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vova5r
title: Occurrence Download

description: A dataset containing 108384 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lycium ferocissimum Miers"
 ]
}

 The dataset includes 108384 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001782-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9vsff
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pimpinella tirupatiensis N.P.Balakr. & Subram."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080574-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zuvws
title: Occurrence Download

description: A dataset containing 46876 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rumex scutatus L., Rumex thyrsiflorus Fingerh.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 46876 records from 237 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251913-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-55552
title: Redemption tidings, vol. 36, nos. 1-52, 1 Jan. - 23 Dec. 1960

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.ctykzk
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 {
 "or" : [
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate rounded"
 ]
 },
 "TaxonKey is Ateles hybridus I.Geoffroy Saint-Hilaire, 1829"
 ]
}

 The dataset includes 38 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001782-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ftwk26
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atelopus mindoensis Peters, 1973"
 ]
}

 The dataset includes 186 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092319-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s6mgby
title: Occurrence Download

description: A dataset containing 1680 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mycena amicta (Fr.) Quél.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 1680 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0359230-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7924/g8vd6wc5
title: Data and scripts from: Linking dynamical heterogeneity to static amorphous order

description: The data files in this collection are associated with the paper "Linking dynamical heterogeneity to static amorphous order", P. Charbonneau, S. Yaida, E. Dyer, and J. Lee, J. Stat. Mech., 2016. They include .dat, .eps, and .m files with associated raw data and generating scripts to allow for replication of the figures.

Glass-forming liquids grow dramatically sluggish upon cooling. This slowdown has long been thought to be accompanied by a growing correlation length. Characteristic dynamical and static length scales, however, have been observed to grow at different rates, which perplexes the relationship between the two and with the slowdown. Here, we show the existence of a direct link between dynamical sluggishness and static point-to-set correlations, holding at the local level as we probe different environments within a liquid. This link, which is stronger and more general than that observed with locally preferred structures, suggests the existence of an intimate relationship between structure and dynamics in a broader range of glass-forming liquids than previously thought.
DOI: 10.7924/g8qn64nt
title: Data and scripts from: Growing timescales and lengthscales characterizing vibrations of amorphous solids

description: The data files in this collection are associated with the paper "Growing timescales and lengthscales characterizing vibrations of amorphous solids", Y. Jin, L. Berthier, P. Charbonneau, G. Parisi, B. Seoane, and F. Zamponi, PNAS, 2016. They include .dat, .eps, and .gle files with associated raw data and generating scripts to allow for replication of the figures.

Low-temperature properties of crystalline solids can be understood using harmonic perturbations around a perfect lattice, as in Debye's theory. Low-temperature properties of amorphous solids, however, strongly depart from such descriptions, displaying enhanced transport, activated slow dynamics across energy barriers, excess vibrational modes with respect to Debye's theory (i.e., a Boson Peak), and complex irreversible responses to small mechanical deformations. These experimental observations indirectly suggest that the dynamics of amorphous solids becomes anomalous at low temperatures. Here, we present direct numerical evidence that vibrations change nature at a well-defined location deep inside the glass phase of a simple glass former. We provide a real-space description of this transition and of the rapidly growing time and length scales that accompany it. Our results provide the seed for a universal understanding of low-temperature glass anomalies within the theoretical framework of the recently discovered Gardner phase transition.
DOI: 10.7924/r4bg2mc23
title: Data and scripts from: Learning about biomolecular solvation from water in protein crystals

description: Water occupies typically 50% of a protein crystal, and thus significantly contributes to the diffraction signal in crystallography experiments. Separating its contribution from that of the protein is, however, challenging because most water molecules are not localized, and are thus difficult to assign to specific density peaks. The intricateness of the protein-water interface compounds this difficulty. This information has, therefore, not often been used to study biomolecular solvation. Here, we develop a methodology to surmount in part this difficulty. More specifically, we compare the solvent structure obtained from diffraction data for which experimental phasing is available to that obtained from constrained molecular dynamics (MD) simulations. The resulting spatial density maps show that commonly used MD water models are only partially successful at reproducing the structural features of biomolecular solvation. The radial distribution of water is captured with only slightly higher accuracy than its angular distribution, and only a fraction of the water molecules assigned with high reliability to the crystal structure are recovered. These differences are likely due to shortcomings of both the water models and the protein force fields. Despite these limitations, we achieve to infer protonation states of some of the side chains utilizing MD-derived densities.
DOI: 10.7924/g8zg6q9t
title: Data and scripts from: Configurational entropy measurements in extremely supercooled liquids that break the glass ceiling

description: The data files in this collection are associated with "Configurational entropy measurements in extremely supercooled liquids that break the glass ceiling", Berthier, Ludovic; Charbonneau, Patrick; Coslovich, Daniele; Ninarello, Andrea; Ozawa, Misaki; Yaida, Sho, Proc. Natl. Acad. Sci. U.S.A, 2017. They include .dat, .m, .gp, .eps, .opj, and .xmg files to allow for the replication of the figures. Figures were generated using the following programs - MatLab R2016b, Gnuplot version 5.0, OriginPro 2015J (academic), or Grace-5.1.23. 

Liquids relax extremely slowly on approaching the glass state. One explanation is that an entropy crisis, because of the rarefaction of available states, makes it increasingly arduous to reach equilibrium in that regime. Validating this scenario is challenging, because experiments offer limited resolution, while numerical studies lag more than eight orders of magnitude behind experimentally relevant timescales. In this work, we not only close the colossal gap between experiments and simulations but manage to create in silico configurations that have no experimental analog yet. Deploying a range of computational tools, we obtain four estimates of their configurational entropy. These measurements consistently confirm that the steep entropy decrease observed in experiments is also found in simulations, even beyond the experimental glass transition. Our numerical results thus extend the observational window into the physics of glasses and reinforce the relevance of an entropy crisis for understanding their formation.

Updated title and abstract from "Data and scripts from: Breaking the glass ceiling: Configurational entropy measurements in extremely supercooled liquids" on 2017-11-03.
DOI: 10.7924/r41n81s8j
title: Data and scripts from: Clustering and assembly dynamics of a one-dimensional microphase former

description: We study the disordered regime of a one-dimensional (1D)  short-range attraction and long-range repulsion (SALR) model, whose simplicity enables detailed analysis by transfer matrices and Monte Carlo simulations. We first characterize the signature of the clustering process on macroscopic observables, and then assess the equilibration dynamics of various simulation algorithms.
DOI: 10.7924/g8jh3j7b
title: Data and scripts from: Microphase equilibrium and assembly dynamics

description: Despite many attempts, ordered equilibrium microphases have yet to be obtained in experimental colloidal suspensions. The recent computation of the equilibrium phase diagram of a microscopic, particle--based microphase former (Zhuang et al., Phys.~Rev.~Lett. (2016)) has nonetheless found such mesoscale assemblies to be thermodynamically stable. Here, we consider their equilibrium and assembly dynamics. At intermediate densities above the order-disorder transition, we identify four different dynamical regimes and the structural changes that underlie the dynamical crossovers from one disordered regime to the next. Below the order-disorder transition, we also find that periodic lamellae are the most dynamically accessible of the periodic microphases. Our analysis thus offers a comprehensive view of the  disordered microphase dynamics and a route to the assembly of periodic microphases in a putative well-controlled, experimental system. The data files in this collection are associated with the paper "Microphase Equilibrium and Assembly Dynamics", Y. Zhang and P. Charbonneau, Journal of Chemical Physics, 2017. They include GLE, EPS, dat, and png files with associated raw data and generating scripts to allow for replication of the figures.
DOI: 10.7924/g88050n6
title: Data and scripts from: Cycle-expansion method for the Lyapunov exponent, susceptibility, and higher moments

description: Lyapunov exponents characterize the chaotic nature of dynamical systems by quantifying the growth rate of uncertainty associated with the imperfect measurement of initial conditions. Finite-time estimates of the exponent, however, experience fluctuations due to both the initial condition and the stochastic nature of the dynamical path. The scale of these fluctuations is governed by the Lyapunov susceptibility, the finiteness of which typically provides a sufficient condition for the law of large numbers to apply. Here, we obtain a formally exact expression for this susceptibility in terms of the Ruelle dynamical zeta function for one-dimensional systems. We further show that, for systems governed by sequences of random matrices, the cycle expansion of the zeta function enables systematic computations of the Lyapunov susceptibility and of its higher-moment generalizations. The method is here applied to a class of dynamical models that maps to static disordered spin chains with interactions stretching over a varying distance, and is tested against Monte Carlo simulations.
DOI: 10.7924/g86h4fbq
title: Data and scripts from: Phase diagram and aggregation dynamics of a monolayer of paramagnetic colloids

description: We have developed a tunable colloidal system and a corresponding theoretical model for studying the phase behavior of particles assembling under the influence of long-range magnetic interactions. A monolayer of  paramagnetic particles is subjected to a spatially uniform magnetic field with a static perpendicular component and a rapidly rotating in-plane component.  The sign and strength of the interactions vary with the tilt angle theta of the rotating magnetic field.  For a purely in-plane field, theta = 90 degrees, interactions are attractive and the experimental results agree well with both equilibrium and out-of-equilibrium predictions based on a two-body interaction model.  For tilt angles 50 degrees ≲ theta ≲ 55 degrees, the two-body interaction gives a short-range attractive and long-range repulsive (SALR) interaction, which predicts the formation of equilibrium microphases. In experiments, however, a different type of assembly is observed. Inclusion of three-body (and higher-order) terms in the model does not resolve the discrepancy.  We further characterize the anomalous regime by measuring the  time-dependent cluster size distribution. The data files in this collection are associated with the paper "Phase diagram and aggregation dynamics of a monolayer of paramagnetic colloids", An T. Pham, Yuan Zhuang, Paige Detwiler, Joshua E. S. Socolar, Patrick Charbonneau, Benjamin B. Yellen, Phys. Rev. E, (2017). They include .txt and .m files with associated raw data and generating scripts to allow for replication of the figures.
DOI: 10.17632/3prppmfyht.1
title: Dataset for "Spatial-temporal Variability and Sources of Lead (Pb) in the Indian Ocean and Asian Marginal Seas"

description: Tables S1-S4 in Supporting Information for the manuscript "Spatial-temporal Variability and Sources of Lead (Pb) in the Indian Ocean and Asian Marginal Seas".
DOI: 10.17632/z6dw96y8sw.1
title: Potent high-avidity neutralizing antibodies and T-cell responses after COVID-19 vaccination in patients with B-cell lymphoma and multiple myeloma. Keppler-Hafkemeyer et al.

description: Pseudonymized patient record data as well as raw data from antibody, avidity, and live-virus neutralization measurements in patients with hematopoietic neoplasia and healthy donors.
DOI: 10.17632/c9ddgvzcp2.1
title: prosocial risk behaviors

description:  A total of 2400 questionnaires were distributed, and 2313 valid questionnaires were recovered, with an effective rate of 96.38%. Among them, 1180 (51.02%) were male students, 1133 (48.98%) were female students, 312 students were in grade four, 311 students were in grade seven, 303 students were in grade eight, 569 students were in senior one, 530 students were in senior two, and 288 students were freshman.
DOI: 10.7924/r4mk68m43
title: Data and scripts from: Correlation lengths in quasi-one-dimensional systems via transfer matrices

description: Using transfer matrices up to next-nearest-neighbour (NNN) interactions, we examine the structural correlations of quasi-one-dimensional systems of hard disks confined by two parallel lines and hard spheres confined in cylinders. Simulations have shown that the non-monotonic and non-smooth growth of the correlation length in these systems accompanies structural crossovers (Fu et al., Soft Matter, 2017, 13, 3296). Here, we identify the theoretical basis for this behaviour. In particular, we associate kinks in the growth of correlation lengths with eigenvalue crossing and splitting. Understanding the origin of such structural crossovers answers questions raised by earlier studies, and thus bridges the gap between theory and simulations for these reference models.
DOI: 10.17632/t286xfwmj6.1
title: A regional-level database of rural population and agriculture in Russia

description: The data reflect the spatial features of rural population change and how it is affected by external factors, primarily the development of agriculture. The data set includes 2010-2020 statistics for 85 Russian
regions, covering 19 measures. The sources of the data are the publications of the Federal State Statistics Service and the Unified Interdepartmental Statistical Information System. The results are presented in seven tables and six map charts.
DOI: 10.17632/nch2tmrxfw.1
title: Echoes,3D scenes and codes used in the experiments

description: 1. train_up_to_8spheres -Echoes and 3D scenes of several thousand scenes used in the experiments
2.Python code - Python code of the neural network
3.Matlab code- Matlab code to generate scene and echoes
DOI: 10.7924/g82z13f1
title: Data and scripts from: Assembly of hard spheres in a cylinder: a computational and experimental study

description: The data files in this collection are associated with the paper "Assembly of hard spheres in a cylinder: a computational and experimental study", L. Fu, C. Bian, W. Shields, D. Cruz, G. Lopez and P. Charbonneau, Soft Matter (2017). They include .dat and .m files with associated raw data and generating scripts to allow for replication of the figures.
DOI: 10.26093/cds/vizier.35920108
title: RXJ1257.2+4738 morphological properties

description: VizieR online Data Catalogue associated with article published in journal Astronomy & Astrophysics with title 'Multi-wavelength landscape of the young galaxy cluster RXJ1257.2+4738 at z=0.866. II. Morphological properties.' (bibcode: 2016A&A...592A.108P)