cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10052564
title: Dataset for: A permutation approach to the analysis of spatio-temporal geochemical data in the presence of heteroscedasticity

description: This paper proposes a novel nonparametric approach to model and reveal differences in the geochemical properties of the soil, when these are described by space-time measurements collected in a spatial region naturally divided into two parts. The investigation is motivated by a real study on a space-time geochemical data set, consisting of measurements of potassium chloride pH, water pH, and percentage of organic carbon collected during the growing season in the agricultural and forest areas of a site near Brno (Czech Republic). These data are here modelled as spatially distributed functions of time. A permutational approach is introduced to test for the effect of covariates in a spatial functional regression model with heteroscedastic residuals. In this context, the proposed method accounts for the heterogeneous spatial structure of the data by grounding on a permutation scheme for estimated residuals of the functional model. Here, a weighted least-squares model is fitted to the observations, leading to asymptotically exchangeable and thus permutable residuals. An extensive simulation study shows that the proposed testing procedure outperforms the competitor approaches that neglect the spatial structure, both in terms of power and size. The results of modelling and testing on the case study are shown and discussed.
DOI: 10.6084/m9.figshare.10052564.v1
title: Dataset for: A permutation approach to the analysis of spatio-temporal geochemical data in the presence of heteroscedasticity

description: This paper proposes a novel nonparametric approach to model and reveal differences in the geochemical properties of the soil, when these are described by space-time measurements collected in a spatial region naturally divided into two parts. The investigation is motivated by a real study on a space-time geochemical data set, consisting of measurements of potassium chloride pH, water pH, and percentage of organic carbon collected during the growing season in the agricultural and forest areas of a site near Brno (Czech Republic). These data are here modelled as spatially distributed functions of time. A permutational approach is introduced to test for the effect of covariates in a spatial functional regression model with heteroscedastic residuals. In this context, the proposed method accounts for the heterogeneous spatial structure of the data by grounding on a permutation scheme for estimated residuals of the functional model. Here, a weighted least-squares model is fitted to the observations, leading to asymptotically exchangeable and thus permutable residuals. An extensive simulation study shows that the proposed testing procedure outperforms the competitor approaches that neglect the spatial structure, both in terms of power and size. The results of modelling and testing on the case study are shown and discussed.
DOI: 10.6084/m9.figshare.10052360
title: Dataset_S1.tsv. List of homozygous parental SNP

description: List of homozygous parental SNP between the following potato (Solanum tuberosum) varieties:Alca Tarma (LOP-868), a tetraploid andigena varietyIvP-101, a diploid "haploid inducer" phureja typePL4, a diploid "haploid inducer" phureja type
DOI: 10.6084/m9.figshare.10052360.v1
title: Dataset_S1.tsv. Genomic outcomes of haploid induction crosses in potato

description: List of homozygous parental SNP between the following potato (Solanum tuberosum) varieties:Alca Tarma (LOP-868), a tetraploid andigena varietyIvP-101, a diploid "haploid inducer" phureja typePL4, a diploid "haploid inducer" phureja type
DOI: 10.6084/m9.figshare.10052354
title: Dataset_S2.tsv. List of parental SNP

description: List of parental SNP (homozygous and heterozygous haploid inducer genotypes included) used for segmental dosage analysis.
DOI: 10.6084/m9.figshare.10052357
title: Dataset_S3.tsv. Filtered genotype calls

description: Filtered genotype calls from high coverage sequencing data of Alca Tarma (LOP-868), IVP101, PL4, and three selected dihaploids
DOI: 10.6084/m9.figshare.10052342
title: CMIP6 Ocean Atlas

description: CMIP6 model output mapped to WOCE/GO-SHIP cruises contained in the GLODAPv2 bottle data product. <br>To use this dataset follow the instructions here: https://github.com/sridge/CMIP6_OceanAtlas<br><br>Contains output from the following CMIP6 models:<br>BCC-CSM2-MRBCC-ESM1CAMS-CSM1-0FGOALS-f3-LCanESM5MIROC-ES2LMIROC6HadGEM3-GC31-LLUKESM1-0-LLGISS-E2-1-G-CCGFDL-ESM4SAM0-UNICONMCM-UA-1-0NorCPM1CESM2<br><br><br><br>
DOI: 10.6084/m9.figshare.10052354.v2
title: Dataset_S2.tsv. Genomic outcomes of haploid induction crosses in potato

description: List of parental SNP (homozygous and heterozygous haploid inducer genotypes included) used for segmental dosage analysis.
DOI: 10.6084/m9.figshare.10052357.v1
title: Dataset_S3.tsv. Genomic outcomes of haploid induction crosses in potato

description: Filtered genotype calls from high coverage sequencing data of Alca Tarma (LOP-868), IVP101, PL4, and three selected dihaploids
DOI: 10.6084/m9.figshare.10052354.v1
title: Dataset_S2.tsvGenomic outcomes of haploid induction crosses in potato

description: List of parental SNP (homozygous and heterozygous haploid inducer genotypes included) used for segmental dosage analysis.
DOI: 10.6084/m9.figshare.10052342.v1
title: CMIP6 Ocean Atlas

description: CMIP6 model output mapped to WOCE/GO-SHIP cruises contained in the GLODAPv2 bottle data product. <br>To use this dataset follow the instructions here: https://github.com/sridge/CMIP6_OceanAtlas<br><br>Contains output from the following CMIP6 models:<br>BCC-CSM2-MRBCC-ESM1CAMS-CSM1-0FGOALS-f3-LCanESM5MIROC-ES2LMIROC6HadGEM3-GC31-LLUKESM1-0-LLGISS-E2-1-G-CCGFDL-ESM4SAM0-UNICONMCM-UA-1-0NorCPM1CESM2<br><br><br><br>
DOI: 10.6084/m9.figshare.10052285
title: Data: Neural bases of unconscious orienting of attention in hemianopic patients: Hemispheric differences

description: EEG and behavioral datasets of the paper "Neural bases of unconscious orienting of attention in hemianopic patients: Hemispheric differences"<br>
DOI: 10.6084/m9.figshare.10052342.v2
title: CMIP6 Ocean Atlas

description: CMIP6 model output mapped to WOCE/GO-SHIP cruises contained in the GLODAPv2 bottle data product. <br>To use this dataset follow the instructions here: https://github.com/sridge/CMIP6_OceanAtlas<br><br>Contains output from the following CMIP6 models:<br>BCC-CSM2-MRBCC-ESM1CAMS-CSM1-0FGOALS-f3-LCanESM5MIROC-ES2LMIROC6HadGEM3-GC31-LLUKESM1-0-LLGISS-E2-1-G-CCGFDL-ESM4SAM0-UNICONMCM-UA-1-0NorCPM1CESM2<br><br><br><br>
DOI: 10.6084/m9.figshare.10052084
title: Supplemental_Data_2_Molecular_dating.zip

description: <b>Supplemental Data 2. Molecular dating. </b>Archive containing files specifying the BEAST analysis of the two 50-taxon (argo-)pastoralist data sets, as well as the thinned posterior distributions of all parameters and the maximum clade consensus trees.
DOI: 10.6084/m9.figshare.10052051
title: c18008 total.pzfx

description: EAE and other data
DOI: 10.6084/m9.figshare.10052051.v1
title: c18008 total.pzfx

description: EAE and other data
DOI: 10.6084/m9.figshare.10052285.v1
title: Data: Neural bases of unconscious orienting of attention in hemianopic patients: Hemispheric differences

description: EEG and behavioral datasets of the paper "Neural bases of unconscious orienting of attention in hemianopic patients: Hemispheric differences"<br>
DOI: 10.6084/m9.figshare.10052033
title: Multidisciplinary database of permeability of fault zones and surrounding protolith rocks at world-wide sites

description: Brittle faults and fault zones are important fluid flow conduits through the crust that are involved in many well-known phenomena (e.g. earthquakes, thermal water and gas transport, or water leakage to tunnels). The permeability property, or the ability of porous materials to conduct water and gas, is one of the key parameters required in understanding and predicting fluid flow. Although close to a thousand studies have been done, and permeability tested in parts of fault zones, a sytematic summary and database is lacking. This data descriptor is for a multi-disciplinary world-wide compilation and review of bulk and matrix permeability of fault zones: 410 datasets, 521 reviewed sites, 379 locations, &gt;10000 publications searched. The review covers studies of faulting processes, geothermal engineering, radioactive waste repositories, groundwater resources, petroleum reservoirs, and underground engineering projects. The objectives are to stimulate cross-disciplinary data sharing and communication about fault zone hydrogeology, document the biases and strategies for testing of fault zones, and provide basic statistics of permeability values for models that require these parameters.
DOI: 10.6084/m9.figshare.10052030
title: Mitogenomic phylogenetic analyses of Leptogorgia virgulata and Leptogorgia hebes (Anthozoa: Octocorallia) from the Gulf of Mexico provides insight onto Gorgoniidae divergence between Pacific and Atlantic lineages.

description: Mitogenomic sequence alignment
DOI: 10.6084/m9.figshare.10052030.v1
title: Mitogenomic phylogenetic analyses of Leptogorgia virgulata and Leptogorgia hebes (Anthozoa: Octocorallia) from the Gulf of Mexico provides insight onto Gorgoniidae divergence between Pacific and Atlantic lineages.

description: Mitogenomic sequence alignment
DOI: 10.6084/m9.figshare.10052285.v2
title: Data: Neural bases of unconscious orienting of attention in hemianopic patients: Hemispheric differences

description: EEG and behavioral datasets of the paper "Neural bases of unconscious orienting of attention in hemianopic patients: Hemispheric differences"<br>
DOI: 10.6084/m9.figshare.10050674
title: Ebitz_PlosCompBio

description: Data set from Ebitz, Sleezer, Jedema, Bradberry & Hayden, Plos Comp Biology.
DOI: 10.6084/m9.figshare.10050587
title: Detection of Anaplasma and Trypanosomes in camels and camel keds

description: A. Are Rotor-Gene Q HRM data files of amplification of <i>Anaplasma</i> spp. in camels and camel keds. The data can be viewed and analyses using Rotor-Gene Q software. NTC is the no template negative control while <i>A. marginale</i> is the positive control. 1-200 are camel blood samples while H1-H117 are camel keds samples. B are gel images of amplification of trypanosomes in camels and camel keds.
DOI: 10.6084/m9.figshare.10052033.v1
title: Multidisciplinary database of permeability of fault zones and surrounding protolith rocks at world-wide sites

description: Brittle faults and fault zones are important fluid flow conduits through the crust that are involved in many well-known phenomena (e.g. earthquakes, thermal water and gas transport, or water leakage to tunnels). The permeability property, or the ability of porous materials to conduct water and gas, is one of the key parameters required in understanding and predicting fluid flow. Although close to a thousand studies have been done, and permeability tested in parts of fault zones, a sytematic summary and database is lacking. This data descriptor is for a multi-disciplinary world-wide compilation and review of bulk and matrix permeability of fault zones: 410 datasets, 521 reviewed sites, 379 locations, &gt;10000 publications searched. The review covers studies of faulting processes, geothermal engineering, radioactive waste repositories, groundwater resources, petroleum reservoirs, and underground engineering projects. The objectives are to stimulate cross-disciplinary data sharing and communication about fault zone hydrogeology, document the biases and strategies for testing of fault zones, and provide basic statistics of permeability values for models that require these parameters.
DOI: 10.6084/m9.figshare.10050674.v1
title: Ebitz_PlosCompBio

description: Data set from Ebitz, Sleezer, Jedema, Bradberry & Hayden, Plos Comp Biology.
DOI: 10.6084/m9.figshare.10050572
title: Data_Isosorbide dinitrate_Fetal intrauterine death_INPer.xls

description: The metabolic activity of endogenous nitric oxide (NO) and the medical use of nitrovasodilator drugs like isosorbide dinitrate has been showing to be potential inducers of cervical ripening prior to surgical evacuation of the uterus. Sixty women with IUFD after 20 weeks of gestation requesting uterine evacuation were randomly selected to receive isosorbide dinitrate- (80 mg/1.5 mL; n=30) or misoprostol gel solution (100 mcg/1.5 mL; n=30) every 3 h with a maximum of four doses or until a Bishop score &gt;7 was reached. Subsequently, patients received a high dose of intravenous oxytocin until the complete uterus evacuation was achieved. Therapeutic efficacy was evaluated by taking the mean of the relative risk of the foetal expulsion that was based on a comparison of event rates and the proportion of women induced to labor at 7, 10 and 15 h after the administration of isosorbide dinitrate or misoprostol. Safety was assessed on the basis of woman´s vital signs and evaluation of adverse effects that included a headache, abdominal pain, pelvic pain, lower back pain, nausea, dizziness and vomiting. The foetal expulsion rate using the isosorbide dinitrate-oxytocin combination was approximately 4.4 times and at least 2.1 times, the foetal expulsion rate with the misoprostol-oxytocin regimen at any given point of time.The average delivery induction interval was significantly lower during the usage of isosorbide dinitrate-oxytocin (8.7 ± 3.1 h) over misoprostol-oxytocin (11.9 ± 3.1 h). This study indicated that intravaginal isosorbide dinitrate followed by intravenous oxytocin was more effective than the conventional method that was used to induce labour in the medical management of foetal death in pregnancies post 20 weeks of gestación.
DOI: 10.6084/m9.figshare.10050572.v1
title: Data_Isosorbide dinitrate_Fetal intrauterine death_INPer.xls

description: The metabolic activity of endogenous nitric oxide (NO) and the medical use of nitrovasodilator drugs like isosorbide dinitrate has been showing to be potential inducers of cervical ripening prior to surgical evacuation of the uterus. Sixty women with IUFD after 20 weeks of gestation requesting uterine evacuation were randomly selected to receive isosorbide dinitrate- (80 mg/1.5 mL; n=30) or misoprostol gel solution (100 mcg/1.5 mL; n=30) every 3 h with a maximum of four doses or until a Bishop score &gt;7 was reached. Subsequently, patients received a high dose of intravenous oxytocin until the complete uterus evacuation was achieved. Therapeutic efficacy was evaluated by taking the mean of the relative risk of the foetal expulsion that was based on a comparison of event rates and the proportion of women induced to labor at 7, 10 and 15 h after the administration of isosorbide dinitrate or misoprostol. Safety was assessed on the basis of woman´s vital signs and evaluation of adverse effects that included a headache, abdominal pain, pelvic pain, lower back pain, nausea, dizziness and vomiting. The foetal expulsion rate using the isosorbide dinitrate-oxytocin combination was approximately 4.4 times and at least 2.1 times, the foetal expulsion rate with the misoprostol-oxytocin regimen at any given point of time.The average delivery induction interval was significantly lower during the usage of isosorbide dinitrate-oxytocin (8.7 ± 3.1 h) over misoprostol-oxytocin (11.9 ± 3.1 h). This study indicated that intravaginal isosorbide dinitrate followed by intravenous oxytocin was more effective than the conventional method that was used to induce labour in the medical management of foetal death in pregnancies post 20 weeks of gestación.
DOI: 10.6084/m9.figshare.10050434
title: Changes in carbon storage (soil, vegetation)

description: The file includes a detailed description of the parameter values used to calculate carbon storage changes in soils and vegetation due to the calculated land-use change in India.<br>
DOI: 10.6084/m9.figshare.10050434.v1
title: Changes in carbon storage (soil, vegetation)

description: The file includes a detailed description of the parameter values used to calculate carbon storage changes in soils and vegetation due to the calculated land-use change in India.<br>
DOI: 10.6084/m9.figshare.10050419
title: Calculation of Biodiversity Intactness Index (BII)

description: Excel files using output from the LandSHIFT model to calculate changes in BII in India for the four scenarios and the base year 2010.
DOI: 10.6084/m9.figshare.10050137
title: Investigation of dissolution rate kinetics of bulk pharmaceutical feed streams within a stirred tank vessel and a twin screw extruder

description: The introduction of continuous manufacturing of pharmaceuticals has highlighted the challenging area of continuous dissolution of solids for work ups to flow chemistry systems. In this study, the use of a 16 mm twin screw extruder (TSE) as a platform technology for solid feeds is investigated using four solid pharmaceutical ingredients (PI) in a mixture of water and IPA. In order for comparison, the same experiments were also carried out in a batch traditional stirred tank vessel (STV). The objectives of this work are to gain further scientific understanding on dissolution kinetics and to compare kinetics in both a batch and continuous system. The concentration of each PI during dissolution is monitored using an in-line UV-ATR probe, allowing the extraction of dissolution kinetics. Faster dissolution rates are achieved in the TSE than in the STV due to higher power dissipation generated by the aggressive shear mixing and thermal energy within the TSE. Complete dissolution of paracetamol is obtained within the residence time of the TSE; complete dissolution of benzoic acid and acetylsalicylic acid are achieved at higher barrel temperatures; however full dissolution of nicotinic acid is not achievable in the TSE under the experimental conditions.
DOI: 10.6084/m9.figshare.10050137.v2
title: Investigation of dissolution rate kinetics of bulk pharmaceutical feed streams within a stirred tank vessel and a twin screw extruder

description: The introduction of continuous manufacturing of pharmaceuticals has highlighted the challenging area of continuous dissolution of solids for work ups to flow chemistry systems. In this study, the use of a 16 mm twin screw extruder (TSE) as a platform technology for solid feeds is investigated using four solid pharmaceutical ingredients (PI) in a mixture of water and IPA. In order for comparison, the same experiments were also carried out in a batch traditional stirred tank vessel (STV). The objectives of this work are to gain further scientific understanding on dissolution kinetics and to compare kinetics in both a batch and continuous system. The concentration of each PI during dissolution is monitored using an in-line UV-ATR probe, allowing the extraction of dissolution kinetics. Faster dissolution rates are achieved in the TSE than in the STV due to higher power dissipation generated by the aggressive shear mixing and thermal energy within the TSE. Complete dissolution of paracetamol is obtained within the residence time of the TSE; complete dissolution of benzoic acid and acetylsalicylic acid are achieved at higher barrel temperatures; however full dissolution of nicotinic acid is not achievable in the TSE under the experimental conditions.
DOI: 10.6084/m9.figshare.10050137.v1
title: Investigation of dissolution rate kinetics of bulk pharmaceutical feed streams within a stirred tank vessel and a twin screw extruder

description: The introduction of continuous manufacturing of pharmaceuticals has highlighted the challenging area of continuous dissolution of solids for work ups to flow chemistry systems. In this study, the use of a 16mm twin screw extruder (TSE) as a platform technology for solid feeds is investigated using four solid pharmaceutical ingredients (PI) in a mixture of water and IPA. In order for comparison, the same experiments were also carried out in a batch traditional stirred tank vessel (STV). The objectives of this work are to gain further scientific understanding on dissolution kinetics and to compare kinetics in both a batch and continuous system. The concentration of each PI during dissolution is monitored using an in-line UV-ATR probe, allowing the extraction of dissolution kinetics. Faster dissolution rates are achieved in the TSE than in the STV due to higher power dissipation generated by the aggressive shear mixing and thermal energy within the TSE. Complete dissolution of paracetamol is obtained within the residence time of the TSE; complete dissolution of benzoic acid and acetylsalicylic acid are achieved at higher barrel temperatures; however full dissolution of nicotinic acid is not achievable in the TSE under the experimental conditions.
DOI: 10.6084/m9.figshare.10050035
title: Plant-hummingbird interactions empirically sampled by us in a xeric shrubland of Mexico from 2012–2015.

description: Plant-hummingbird interactions empirically sampled by us in a xeric shrubland of Mexico from 2012–2015.
DOI: 10.6084/m9.figshare.10049930
title: LandSHIFT simulation results for India (GIS ASCII raster)

description: This data collection includes land-use scenarios calculated with the LandSHIFT model for four scenarios as GIS-raster maps and Excel files used to calculate land-use change effects on biodiversity with the BII indicator. <br>
DOI: 10.6084/m9.figshare.10049930.v2
title: LandSHIFT simulation results for India (GIS ASCII Raster)

description: This data collection includes land-use scenarios calculated with the LandSHIFT model for four scenarios as GIS-raster maps and Excel files used to calculate land-use change effects on biodiversity with the BII indicator. <br>
DOI: 10.6084/m9.figshare.10049930.v1
title: LandSHIFT_Land_Use_Simulations_Results_GIS.zip

description: This data collection includes land-use scenarios calculated with the LandSHIFT model for four scenarios as GIS-raster maps and Excel files used to calculate land-use change effects on biodiversity with the BII indicator. <br>
DOI: 10.6084/m9.figshare.10050035.v1
title: Plant-hummingbird interactions empirically sampled by us in a xeric shrubland of Mexico from 2012–2015.

description: Plant-hummingbird interactions empirically sampled by us in a xeric shrubland of Mexico from 2012–2015.
DOI: 10.6084/m9.figshare.10049756
title: NGS750.xlsx

description: supporting data
DOI: 10.6084/m9.figshare.10049756.v1
title: NGS750.xlsx

description: supporting data
DOI: 10.6084/m9.figshare.10049756.v3
title: NGS750.xlsx

description: supporting data
DOI: 10.6084/m9.figshare.10049756.v2
title: NGS750.xlsx

description: supporting data
DOI: 10.6084/m9.figshare.10049705
title: MOESM5 of Exploring gene networks in two sunflower lines with contrasting leaf senescence phenotype using a system biology approach

description: Additional file 5: Table S3. Expression level and degree of TFs up- and down-regulated selected by WGCNA analysis.
DOI: 10.6084/m9.figshare.10049699
title: MOESM4 of Exploring gene networks in two sunflower lines with contrasting leaf senescence phenotype using a system biology approach

description: Additional file 4: Table S2. Metabolites profile between post-anthesis vs. anthesis in the early and delayed senescence lines respectively.
DOI: 10.6084/m9.figshare.10049705.v1
title: MOESM5 of Exploring gene networks in two sunflower lines with contrasting leaf senescence phenotype using a system biology approach

description: Additional file 5: Table S3. Expression level and degree of TFs up- and down-regulated selected by WGCNA analysis.
DOI: 10.6084/m9.figshare.10049699.v1
title: MOESM4 of Exploring gene networks in two sunflower lines with contrasting leaf senescence phenotype using a system biology approach

description: Additional file 4: Table S2. Metabolites profile between post-anthesis vs. anthesis in the early and delayed senescence lines respectively.
DOI: 10.6084/m9.figshare.10049696
title: MOESM3 of Exploring gene networks in two sunflower lines with contrasting leaf senescence phenotype using a system biology approach

description: Additional file 3: Table S1. Differentially expressed genes between post-anthesis vs. anthesis in the early and delayed senescence lines respectively.