cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1309301
title: Diving Related Changes in the Blood Oxygen Stores of Rehabilitating Harbor Seal Pups

description: This dataset was collected from maternally dependent harbor seal (<em>Phoca vitulina</em>) pups that were admitted to the Marine Animal Rehabilitation and Conservation (MARC) program in Biddeford, Maine, USA in the spring/summer of 2012. All hematological data were collected for husbandry or veterinary purposes and used opportunistically for this study. The dive data available in this dataset were collected using several ReefNet Sensus Ultra units which were each attached just posterior to the scapula of rehabilitating harbor seal pups. These units recorded time, pressure and temperature and collected all of this information every 3 seconds when the pups were below the water's surface. This information could thus be used to determine the amount of time animals spent submerged during their stay in rehabilitation. The Sensus Ultra units were removed by MARC staff during periods of animal discomfort or illness, and the units were occasionally removed by the animals during times of play, so the data are discontinuous. These data were used to study the simultaneous development of blood oxygen stores and diving behaviors during rehabiltiation in harbor seal pups. Please refer to the ReadMe.txt file for more information on the files within this fileset. The data in the "12-0xx Total Dives" files were analyzed using the diveMove package in R. The script written specifically to analyze data from these ReefNet Sensus Ultra tags in diveMove is available at the following location https://zenodo.org/record/15416
DOI: 10.6084/m9.figshare.1309313
title: Subject k01

description: Interhemispheric differences of fMRI responses to visual stimulation
DOI: 10.6084/m9.figshare.1309314
title: Subject k02

description: Interhemispheric differences of fMRI responses to visual stimulation
DOI: 10.6084/m9.figshare.1309315
title: Subject k04

description: Interhemispheric differences of fMRI responses to visual stimulation
DOI: 10.6084/m9.figshare.1309313.v1
title: Subject k01

description: Interhemispheric differences of fMRI responses to visual stimulation
DOI: 10.6084/m9.figshare.1309315.v1
title: Subject k04

description: Interhemispheric differences of fMRI responses to visual stimulation
DOI: 10.6084/m9.figshare.1309316.v1
title: Subject k03

description: Interhemispheric differences of fMRI responses to visual stimulation
DOI: 10.6084/m9.figshare.1309314.v1
title: Subject k02

description: Interhemispheric differences of fMRI responses to visual stimulation
DOI: 10.6084/m9.figshare.1309248
title: Suppl Files: Redox gradients structure microbial communities in polygonized Arctic wet tundra soils

description: This study investigated how microbial community structure and diversity varied with depth and microtopography in ice wedge polygons of wet tundra of the Arctic Coastal Plain in northern Alaska, and what soil variables explain these spatial patterns. We observed strong changes in community structure and diversity with depth, and more subtle changes between areas of high and low microtopography, with the largest differences apparent near the soil surface. These patterns arose primarily from redox gradients (measured using the ratio of reduced Fe to total Fe in acid extracts as a proxy): conditions grew more reducing with depth and were most oxidized in shallow regions of polygon rims. Organic matter and pH also changed with depth and microtopography, but were less effective predictors of the microbial community structure and relative abundance of specific taxa. Of all other measured variables, lactic acid concentration was the best, in combination with redox, for describing the microbial community. We conclude that redox conditions are the dominant force in shaping microbial communities in this landscape. Oxygen and other electron acceptors allowed the greatest diversity of microbes to flourish: in their absence the community was reduced to a simpler core of anaerobes, dominated by fermenters.
DOI: 10.6084/m9.figshare.1309249
title: Suppl files: Redox gradients structure microbial communities in polygonized Arctic wet tundra soils

description: This study investigated how microbial community structure and diversity varied with depth and microtopography in ice wedge polygons of wet tundra of the Arctic Coastal Plain in northern Alaska, and what soil variables explain these spatial patterns. We observed strong changes in community structure and diversity with depth, and more subtle changes between areas of high and low microtopography, with the largest differences apparent near the soil surface. These patterns arose primarily from redox gradients (measured using the ratio of reduced Fe to total Fe in acid extracts as a proxy): conditions grew more reducing with depth and were most oxidized in shallow regions of polygon rims. Organic matter and pH also changed with depth and microtopography, but were less effective predictors of the microbial community structure and relative abundance of specific taxa. Of all other measured variables, lactic acid concentration was the best, in combination with redox, for describing the microbial community. We conclude that redox conditions are the dominant force in shaping microbial communities in this landscape. Oxygen and other electron acceptors allowed the greatest diversity of microbes to flourish: in their absence the community was reduced to a simpler core of anaerobes, dominated by fermenters.
DOI: 10.6084/m9.figshare.1308944
title: 2014 06 27 and 2014 07 02 Summary of Trail Camera Images of Anomalous Animals

description: Summarizes the images of the anomalous animals. Describes materials and methods used to obtain the images. Briefly discusses image quality. Presents enlargements and identifies features within the enlargements.<br>Project order 25a<br>
DOI: 10.6084/m9.figshare.1309248.v1
title: Suppl Files: Redox gradients structure microbial communities in polygonized Arctic wet tundra soils

description: This study investigated how microbial community structure and diversity varied with depth and microtopography in ice wedge polygons of wet tundra of the Arctic Coastal Plain in northern Alaska, and what soil variables explain these spatial patterns. We observed strong changes in community structure and diversity with depth, and more subtle changes between areas of high and low microtopography, with the largest differences apparent near the soil surface. These patterns arose primarily from redox gradients (measured using the ratio of reduced Fe to total Fe in acid extracts as a proxy): conditions grew more reducing with depth and were most oxidized in shallow regions of polygon rims. Organic matter and pH also changed with depth and microtopography, but were less effective predictors of the microbial community structure and relative abundance of specific taxa. Of all other measured variables, lactic acid concentration was the best, in combination with redox, for describing the microbial community. We conclude that redox conditions are the dominant force in shaping microbial communities in this landscape. Oxygen and other electron acceptors allowed the greatest diversity of microbes to flourish: in their absence the community was reduced to a simpler core of anaerobes, dominated by fermenters.
DOI: 10.6084/m9.figshare.1308944.v2
title: 2014 06 27 and 2014 07 02 Summary of Trail Camera Images of Anomalous Animals

description: Summarizes the images of the anomalous animals. Describes materials and methods used to obtain the images. Briefly discusses image quality. Presents enlargements and identifies features within the enlargements.<br>Project order 25a<br>
DOI: 10.6084/m9.figshare.1309249.v2
title: Suppl files: Redox gradients structure microbial communities in polygonized Arctic wet tundra soils

description: This study investigated how microbial community structure and diversity varied with depth and microtopography in ice wedge polygons of wet tundra of the Arctic Coastal Plain in northern Alaska, and what soil variables explain these spatial patterns. We observed strong changes in community structure and diversity with depth, and more subtle changes between areas of high and low microtopography, with the largest differences apparent near the soil surface. These patterns arose primarily from redox gradients (measured using the ratio of reduced Fe to total Fe in acid extracts as a proxy): conditions grew more reducing with depth and were most oxidized in shallow regions of polygon rims. Organic matter and pH also changed with depth and microtopography, but were less effective predictors of the microbial community structure and relative abundance of specific taxa. Of all other measured variables, lactic acid concentration was the best, in combination with redox, for describing the microbial community. We conclude that redox conditions are the dominant force in shaping microbial communities in this landscape. Oxygen and other electron acceptors allowed the greatest diversity of microbes to flourish: in their absence the community was reduced to a simpler core of anaerobes, dominated by fermenters.
DOI: 10.6084/m9.figshare.1309249.v1
title: Redox gradients structure microbial communities in polygonized Arctic wet tundra soils

description: This study investigated how microbial community structure and diversity varied with depth and microtopography in ice wedge polygons of wet tundra of the Arctic Coastal Plain in northern Alaska, and what soil variables explain these spatial patterns. We observed strong changes in community structure and diversity with depth, and more subtle changes between areas of high and low microtopography, with the largest differences apparent near the soil surface. These patterns arose primarily from redox gradients (measured using the ratio of reduced Fe to total Fe in acid extracts as a proxy): conditions grew more reducing with depth and were most oxidized in shallow regions of polygon rims. Organic matter and pH also changed with depth and microtopography, but were less effective predictors of the microbial community structure and relative abundance of specific taxa. Of all other measured variables, lactic acid concentration was the best, in combination with redox, for describing the microbial community. We conclude that redox conditions are the dominant force in shaping microbial communities in this landscape. Oxygen and other electron acceptors allowed the greatest diversity of microbes to flourish: in their absence the community was reduced to a simpler core of anaerobes, dominated by fermenters.
DOI: 10.6084/m9.figshare.1308728
title: Allergic Airway Inflammation is Differentially Exacerbated by Daytime and Nighttime Ultrafine and Submicron Fine Ambient Particles: Heme Oxygenase-1 as an Indicator of PM-Mediated Allergic Inflammation

description: Ambient particulate matter (PM) originates from a range of sources and differs in composition with respect to season, time of day, and particle size. In this study, ambient PM samples in the ultrafine and submicrometer fine range were tested for the potential to exacerbate a murine model of allergic airway inflammation when exposure occurs solely during allergic sensitization, but not during subsequent allergen challenge. Temporally resolved and size-segregated PM samples were used to understand how summer or winter, day or night, and ambient ultrafine and submicrometer fine particle size influence PM’s ability to exacerbate allergic inflammation. PM was collected in urban Fresno, CA. BALB/<i>c</i> mice were exposed to PM and house dust mite allergen (HDM) via intranasal aspiration on d 1, 3, and 5. HDM challenge occurred on d 12–14, with inflammation assessed 24 h following final challenge. While season or particle size did not predict allergic inflammation, daytime ultrafine and submicrometer fine particles significantly increased total cellular inflammation, specifically lymphocyte and eosinophil infiltration, compared to allergic controls. Further studies examined PM-mediated changes within the lung during the period where allergen sensitization occurred by measuring direct effects of PM on pulmonary oxidative stress and inflammation. Pulmonary levels of heme oxygenase-1 (HO-1), a biomarker of oxidative stress, but not cellular inflammation, demonstrated a remarkable correlation with the degree of allergic inflammation in animals sensitized to allergen and PM concomitantly, suggesting acute PM-mediated HO-1 levels may serve as a predictive indicator of a particle’s ability to exacerbate allergic airway inflammation.
DOI: 10.6084/m9.figshare.1308728.v1
title: Allergic Airway Inflammation is Differentially Exacerbated by Daytime and Nighttime Ultrafine and Submicron Fine Ambient Particles: Heme Oxygenase-1 as an Indicator of PM-Mediated Allergic Inflammation

description: Ambient particulate matter (PM) originates from a range of sources and differs in composition with respect to season, time of day, and particle size. In this study, ambient PM samples in the ultrafine and submicrometer fine range were tested for the potential to exacerbate a murine model of allergic airway inflammation when exposure occurs solely during allergic sensitization, but not during subsequent allergen challenge. Temporally resolved and size-segregated PM samples were used to understand how summer or winter, day or night, and ambient ultrafine and submicrometer fine particle size influence PM’s ability to exacerbate allergic inflammation. PM was collected in urban Fresno, CA. BALB/<i>c</i> mice were exposed to PM and house dust mite allergen (HDM) via intranasal aspiration on d 1, 3, and 5. HDM challenge occurred on d 12–14, with inflammation assessed 24 h following final challenge. While season or particle size did not predict allergic inflammation, daytime ultrafine and submicrometer fine particles significantly increased total cellular inflammation, specifically lymphocyte and eosinophil infiltration, compared to allergic controls. Further studies examined PM-mediated changes within the lung during the period where allergen sensitization occurred by measuring direct effects of PM on pulmonary oxidative stress and inflammation. Pulmonary levels of heme oxygenase-1 (HO-1), a biomarker of oxidative stress, but not cellular inflammation, demonstrated a remarkable correlation with the degree of allergic inflammation in animals sensitized to allergen and PM concomitantly, suggesting acute PM-mediated HO-1 levels may serve as a predictive indicator of a particle’s ability to exacerbate allergic airway inflammation.
DOI: 10.6084/m9.figshare.1308698
title: uploading test

description: please ignore this data set
DOI: 10.6084/m9.figshare.1308674
title: 50_F_T_2

description: Archive with graphs.
DOI: 10.6084/m9.figshare.1308674.v1
title: 50_F_T_2

description: Archive with graphs.
DOI: 10.6084/m9.figshare.1308698.v1
title: raw fMRI data set (Boly et al.)

description: raw fMRI data set obtained in "Stimulus set meaningfulness and neurophysiological differentiation: a functional magnetic resonance imaging study"
DOI: 10.6084/m9.figshare.1308573
title: 100_F_T_1

description: Archive with graphs.
DOI: 10.6084/m9.figshare.1308574
title: LA TRANSPARENCIA ADMINISTRATIVA: PRINCIPIO RECTOR, INELUDIBLE, DEL ACTUAR ADMINISTRATIVO Y GARANTE DE LOS DERECHOS DE LOS ADMINISTRADOS. DE SU ACEPTABLE REGULACIÓN PRESENTE A SU DESEABLE CULMINACIÓN, SIGUIENDO EL PARADIGMA DEL DERECHO DE ACCESO A LA INFORMACIÓN EN MATERIA MEDIOAMBIENTAL (CONTINUAÇÃO DA EDIÇÃO ANTERIOR – REVISTA JURÍDICA 2013 - III)

description: La transparencia administrativa ha sido y sigue siendo, hoy en día, una fuente de constantes preocupaciones y problemas para los Estados, dado que, resulta, sumamente complicado, encontrar el justo equilibrio entre aquella y la reserva lógica (limitaciones y excepciones) que demanda toda Administración Pública. Con la finalidad de valorar, debidamente, la situación actual en que se encuentra la transparencia administrativa, hemos analizado la evolución seguida por la misma, concluyendo, que se ha caracterizado, por ser: Unidireccional y creciente. Por otro lado y en íntima unión con ella, hemos querido traer a colación, el Derecho de acceso a la información en materia medioambiental, dado que, el mismo, es el máximo exponente de la transparencia administrativa, y entendemos, que modelo a seguir. (CONTINUAÇÃO DA EDIÇÃO ANTERIOR – REVISTA JURÍDICA 2013 - III)
DOI: 10.6084/m9.figshare.1308698.v2
title: raw fMRI data set (Boly et al.)

description: raw fMRI data set obtained in "Stimulus set meaningfulness and neurophysiological differentiation: a functional magnetic resonance imaging study"
DOI: 10.6084/m9.figshare.1308574.v1
title: LA TRANSPARENCIA ADMINISTRATIVA: PRINCIPIO RECTOR, INELUDIBLE, DEL ACTUAR ADMINISTRATIVO Y GARANTE DE LOS DERECHOS DE LOS ADMINISTRADOS. DE SU ACEPTABLE REGULACIÓN PRESENTE A SU DESEABLE CULMINACIÓN, SIGUIENDO EL PARADIGMA DEL DERECHO DE ACCESO A LA INFORMACIÓN EN MATERIA MEDIOAMBIENTAL (CONTINUAÇÃO DA EDIÇÃO ANTERIOR – REVISTA JURÍDICA 2013 - III)

description: La transparencia administrativa ha sido y sigue siendo, hoy en día, una fuente de constantes preocupaciones y problemas para los Estados, dado que, resulta, sumamente complicado, encontrar el justo equilibrio entre aquella y la reserva lógica (limitaciones y excepciones) que demanda toda Administración Pública. Con la finalidad de valorar, debidamente, la situación actual en que se encuentra la transparencia administrativa, hemos analizado la evolución seguida por la misma, concluyendo, que se ha caracterizado, por ser: Unidireccional y creciente. Por otro lado y en íntima unión con ella, hemos querido traer a colación, el Derecho de acceso a la información en materia medioambiental, dado que, el mismo, es el máximo exponente de la transparencia administrativa, y entendemos, que modelo a seguir. (CONTINUAÇÃO DA EDIÇÃO ANTERIOR – REVISTA JURÍDICA 2013 - III)
DOI: 10.6084/m9.figshare.1308573.v1
title: 100_F_T_1

description: Archive with graphs.
DOI: 10.6084/m9.figshare.1308563
title: SAC Magnetohydrostatic Background Conditions

description: Initial conditon data for SAC, covering the photosphere to the beta = 1 line, at 1.5 Mm above the photosphere.
DOI: 10.6084/m9.figshare.1308698.v3
title: raw fMRI data set (Boly et al.)

description: raw fMRI data set obtained in "Stimulus set meaningfulness and neurophysiological differentiation: a functional magnetic resonance imaging study"
DOI: 10.6084/m9.figshare.1308563.v1
title: SAC Magnetohydrostatic Background Conditions

description: Initial conditon data for SAC, covering the photosphere to the beta = 1 line, at 1.5 Mm above the photosphere.
DOI: 10.6084/m9.figshare.1308552
title: Online Variational Bayes Inference for High-Dimensional Correlated Data

description: High-dimensional data with hundreds of thousands of observations are becoming commonplace in many disciplines. The analysis of such data poses many computational challenges, especially when the observations are correlated over time and/or across space. In this article, we propose flexible hierarchical regression models for analyzing such data that accommodate serial and/or spatial correlation. We address the computational challenges involved in fitting these models by adopting an approximate inference framework. We develop an online variational Bayes algorithm that works by incrementally reading the data into memory one portion at a time. The performance of the method is assessed through simulation studies. The methodology is applied to analyze signal intensity in MRI images of subjects with knee osteoarthritis, using data from the Osteoarthritis Initiative. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.1308698.v4
title: raw fMRI data set (Boly et al.)

description: raw fMRI data set obtained in "Stimulus set meaningfulness and neurophysiological differentiation: a functional magnetic resonance imaging study"
DOI: 10.6084/m9.figshare.1308551
title: 2014 07 01-02 Time-Lapse Sequence Images 6500-7500

description: 1-2 July 2014 - Partial sequence of Reconyx HC600 HyperFire trail camera images using both the motion sensor and time-lapse to trigger the camera. The total sequence includes 14,546 images covering the period 11:15 AM Eastern Standard Time on 1 July 2014 through 12:27 PM Eastern Standard Time on 2 July 2014. The intention was for a long-term observation (about 10 days) however the motion sensor triggered on moving branches and in consequence the memory card was full in a little more than one day. The time lapse sequence turns off after sunset to conserve battery and memory space and resumes before sunrise. The first 2000 images happen to also document finding and casting a large (approximately 14" long by 5" wide) footprint nearly on center in the scene. During the time-lapse sequence known animals such as deer are visible moving through the scene. No other human activity is observed. An unknown animal appears in image 6891. GPS coordinates of the camera are latitude N 40 deg 09.038 min longitude W 074 deg 08.894 min. The camera is attached 20 feet above the ground in a medium sized tree at the western edge of the cleared area underneath the power transmission lines and with a view across that cleared area at an approximate orientation of 42 deg magnetic. NOTE: Images 6965, 7065, 7165, 7265, 7365, and 7465 are missing. They were most likely deleted inadvertently while initially screening the images. They are missing from both working folders and back-up copies of the 1-2July 2014 data.<br>Project order 24a<br>
DOI: 10.6084/m9.figshare.1308552.v1
title: Online Variational Bayes Inference for High-Dimensional Correlated Data

description: ABSTRACTHigh-dimensional data with hundreds of thousands of observations are becoming commonplace in many disciplines. The analysis of such data poses many computational challenges, especially when the observations are correlated over time and/or across space. In this paper we propose flexible hierarchical regression models for analyzing such data that accommodate serial and/or spatial correlation. We address the computational challenges involved in fitting these models by adopting an approximate inference framework. We develop an online variational Bayes algorithm that works by incrementally reading the data into memory one portion at a time. The performance of the method is assessed through simulation studies. The methodology is applied to analyze signal intensity in MRI images of subjects with knee osteoarthritis, using data from the Osteoarthritis Initiative.
DOI: 10.6084/m9.figshare.1308698.v5
title: raw fMRI data set (Boly et al.)

description: raw fMRI data set obtained in "Stimulus set meaningfulness and neurophysiological differentiation: a functional magnetic resonance imaging study"