cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0937485.09fu
title: SH0937485.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0937486.09fu
title: SH0937486.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0937487.09fu
title: SH0937487.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.34740/kaggle/dsv/5297492
title: Balochi Language to English Translation Dataset
DOI: 10.5281/zenodo.7783361
title: Data from: Is a community state reachable, and why?, and Coexistence and collapse: an experimental investigation of the persistent communities of a protist species pool

description: Deterministic models have difficulties to take into account stochasticity during community assembly. As a tool to circumvent this problem, we present a qualitative discreteevent model, where consequences of interspecific interactions are described as rules. This model provides a map of all possible future dynamics for a given system, which allows to exhaustively describe the possible pathways during an assembly process. Such a description does not rely on species traits details and is insensitive to stochastic effects. This allows to show that subsets of species are sometimes impossible to reach starting from larger sets of species, and therefore to question the reachability of community states during the system’s dynamics. Applying the model to an experimental dataset studying the collapse of protist communities, we obtain a very good theory-experiment agreement. We finally discuss what the notion of reachability can bring to community assembly.
description: This repository contains the dataset from the article A. Weatherby et al. (1998) Coexistence and collapse: an experimental investigation of the persistent communities of a protist species pool* Journal of Animal Ecology, 67, 554–566. Part of this dataset was presented in the original article ; a new analysis was performed in the article M. de Goër de Herve et al. (2023) Is a community state reachable, and why?, which uses a more extensive part of the data. The whole dataset is presented here, as well as the code used to perform the model-data comparison presented in M. de Goër de Herve et al.
description: {"references": ["A. Weatherby et al. (1998) Coexistence and collapse: an experimental investigation of the persistent communities of a protist species pool, Journal of Animal Ecology, 67, 554\u2013566"]}
DOI: 10.5281/zenodo.7783360
title: Data from: Is a community state reachable, and why?, and Coexistence and collapse: an experimental investigation of the persistent communities of a protist species pool

description: Deterministic models have difficulties to take into account stochasticity during community assembly. As a tool to circumvent this problem, we present a qualitative discreteevent model, where consequences of interspecific interactions are described as rules. This model provides a map of all possible future dynamics for a given system, which allows to exhaustively describe the possible pathways during an assembly process. Such a description does not rely on species traits details and is insensitive to stochastic effects. This allows to show that subsets of species are sometimes impossible to reach starting from larger sets of species, and therefore to question the reachability of community states during the system’s dynamics. Applying the model to an experimental dataset studying the collapse of protist communities, we obtain a very good theory-experiment agreement. We finally discuss what the notion of reachability can bring to community assembly.
description: This repository contains the dataset from the article A. Weatherby et al. (1998) Coexistence and collapse: an experimental investigation of the persistent communities of a protist species pool* Journal of Animal Ecology, 67, 554–566. Part of this dataset was presented in the original article ; a new analysis was performed in the article M. de Goër de Herve et al. (2023) Is a community state reachable, and why?, which uses a more extensive part of the data. The whole dataset is presented here, as well as the code used to perform the model-data comparison presented in M. de Goër de Herve et al.
description: {"references": ["A. Weatherby et al. (1998) Coexistence and collapse: an experimental investigation of the persistent communities of a protist species pool, Journal of Animal Ecology, 67, 554\u2013566"]}
DOI: 10.5281/zenodo.7793331
title: An explorative study into the attitudes, skills, and knowledge of primary and post-Primary teachers in relation to the provision for students with English as an Additional Language (EAL).

description: The data contained here was gathered for a quantitative and qualitative-based study to investigate the attitudes, skills, and knowledge of primary and post-Primary teachers in Ireland in relation to the provision for students with English as an Additional Language (EAL). The data collection period will begin 20th January and the 20th February 2021 and was approved by UCC Social Research Ethics Committee (2021-232). A data codebook is also provided to support the interpretation of the data.
DOI: 10.5281/zenodo.7793330
title: An explorative study into the attitudes, skills, and knowledge of primary and post-Primary teachers in relation to the provision for students with English as an Additional Language (EAL).

description: The data contained here was gathered for a quantitative and qualitative-based study to investigate the attitudes, skills, and knowledge of primary and post-Primary teachers in Ireland in relation to the provision for students with English as an Additional Language (EAL). The data collection period will begin 20th January and the 20th February 2021 and was approved by UCC Social Research Ethics Committee (2021-232). A data codebook is also provided to support the interpretation of the data.
DOI: 10.6084/m9.figshare.22492792
title: NH50 NINT

description: NH50 concentrations from GISS E2.2-G NINT simulations.
DOI: 10.6084/m9.figshare.22492792.v1
title: NH50 NINT

description: NH50 concentrations from GISS E2.2-G NINT simulations.
DOI: 10.6084/m9.figshare.22492807
title: NH50 OMA

description: NH50 concentrations from GISS E2.2-G OMA simulations.
DOI: 10.6084/m9.figshare.22492807.v1
title: NH50 OMA

description: NH50 concentrations from GISS E2.2-G OMA simulations.
DOI: 10.14278/rodare.2243
title: Data Publication: MATLAB code for pole figure calculations of Co-Cr-Ga-Si films

description: MATLAB code for the pole figure data calculations of the paper: Growth and Martensitic Transformation of Ferromagnetic Co-Cr-Ga-Si Epitaxial Films done by Yuru Ge, Klara Lünser, Lukas Fink, Fabian Ganss, and Sebastian Fähler. It is inadvertently forgotten to publish in Rodare when uploading the data of this paper on 30.01.2023 (DOI: 10.14278/rodare.2123).
DOI: 10.14278/rodare.2206
title: Data publication: Electrical Conductivity of Iron in Earth's Core from Microscopic Ohm's Law

description: Simulation and literature data on the electrical and thermal conductivity of iron. The raw simulation data was generated from time-dependent density functional theory calculations. Post-processing was applied to obtain the transport properties (conductivities) as described in the associated journal publication. The literature data was compiled from available publication data as referenced in the associated journal publication.
description: {"references": ["10.1103/PhysRevB.107.115131"]}
DOI: 10.14278/rodare.2207
title: Data publication: Electrical Conductivity of Iron in Earth's Core from Microscopic Ohm's Law

description: Simulation and literature data on the electrical and thermal conductivity of iron. The raw simulation data was generated from time-dependent density functional theory calculations. Post-processing was applied to obtain the transport properties (conductivities) as described in the associated journal publication. The literature data was compiled from available publication data as referenced in the associated journal publication.
description: {"references": ["10.1103/PhysRevB.107.115131"]}
DOI: 10.14278/rodare.2202
title: Data publication: Experimental and numerical investigation of a density-driven instability during a horizontal miscible displacement

description: Data from flow visualization experiments, results of numerical simulations and Particle Image Velocimetry image data
DOI: 10.14278/rodare.2203
title: Data publication: Experimental and numerical investigation of a density-driven instability during a horizontal miscible displacement

description: Data from flow visualization experiments, results of numerical simulations and Particle Image Velocimetry image data
DOI: 10.5281/zenodo.7793327
title: Forschungsdaten zur Masterarbeit: Potenziale von Fachverlagen im Bildungsbereich für die Verstetigung von offenen Bildungsressourcen (OER)

description: Diese Forschungsdaten gehören zu Masterarbeit:<br> Schwella, M. (2023). Potenziale von Fachverlagen im Bildungsbereich für die Verstetigung von offenen Bildungsressourcen (OER).<br> 1. Gutachterin: Prof. Dr. Ulrike Wuttke<br> 2. Gutachterin: Prof. Dr. Heike Neuroth Inhalt des veröffentlichten Verzeichnisses (zip-Archiv):<br> A2_1_Knime_Workflow_Group<br> A2_2_Dokumentenrecherche<br> A2_2_1_Ergebnistabellen<br> A2_2_2_Zwischenergebnisse<br> A2_2_3_Umfragetexte<br> A2_3_Mural_Whiteboards<br> A2_3_1_Final<br> A2_3_2_Zeitschnitte<br> A2_4_Screenshots<br> A2_4_T1_Cornelsen<br> A2_4_T5_Serlo<br> A2_4_T7_Tutory<br> A2_4_T8_Fobizz<br> A2_4_T11_openmusic<br> A2_5_readme.txt Es handelt sich um verschiedene Datenformate, die in Vorbereitung und als Ergebnis der qualitativen Stakeholder-, Dokumenten- und Potenzialanalyse entstanden. Es werden Suchergebnisse aus Onlinequellen aufbereitet (KNIME Workflow Group), in mehreren Stufen bewertet (Review Matrix) und durch zwei qualitative Online-Umfragen ergänzt. Die Dokumentenanalyse wurde auf einem Online-Whiteboard (Mural) erstellt und in Zeitschnitten festgehalten. Wo eine Internetarchivierung (wayback machine) für die Dokumentenanalyse (Plattformen, free login) nicht möglich war sind Screenshots abgespeichert. Weitere Hinweise zur Nachnutzung des Datensatzes sind in der Readme-Datei festgehalten.
DOI: 10.5281/zenodo.7793326
title: Forschungsdaten zur Masterarbeit: Potenziale von Fachverlagen im Bildungsbereich für die Verstetigung von offenen Bildungsressourcen (OER)

description: Diese Forschungsdaten gehören zu Masterarbeit:<br> Schwella, M. (2023). Potenziale von Fachverlagen im Bildungsbereich für die Verstetigung von offenen Bildungsressourcen (OER).<br> 1. Gutachterin: Prof. Dr. Ulrike Wuttke<br> 2. Gutachterin: Prof. Dr. Heike Neuroth Inhalt des veröffentlichten Verzeichnisses (zip-Archiv):<br> A2_1_Knime_Workflow_Group<br> A2_2_Dokumentenrecherche<br> A2_2_1_Ergebnistabellen<br> A2_2_2_Zwischenergebnisse<br> A2_2_3_Umfragetexte<br> A2_3_Mural_Whiteboards<br> A2_3_1_Final<br> A2_3_2_Zeitschnitte<br> A2_4_Screenshots<br> A2_4_T1_Cornelsen<br> A2_4_T5_Serlo<br> A2_4_T7_Tutory<br> A2_4_T8_Fobizz<br> A2_4_T11_openmusic<br> A2_5_readme.txt Es handelt sich um verschiedene Datenformate, die in Vorbereitung und als Ergebnis der qualitativen Stakeholder-, Dokumenten- und Potenzialanalyse entstanden. Es werden Suchergebnisse aus Onlinequellen aufbereitet (KNIME Workflow Group), in mehreren Stufen bewertet (Review Matrix) und durch zwei qualitative Online-Umfragen ergänzt. Die Dokumentenanalyse wurde auf einem Online-Whiteboard (Mural) erstellt und in Zeitschnitten festgehalten. Wo eine Internetarchivierung (wayback machine) für die Dokumentenanalyse (Plattformen, free login) nicht möglich war sind Screenshots abgespeichert. Weitere Hinweise zur Nachnutzung des Datensatzes sind in der Readme-Datei festgehalten.
DOI: 10.6084/m9.figshare.3761562.v2545
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v2544
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.25573/data.22337959
title: Assembly of plant-associated soil microbial communities during succession in dry and moist Neotropical forests - ITS (Fungi) Data

description: Our study was conducted at two sites that represent dry (Los Santos) and moist (Agua Salud) tropical lowland forest types in Panama. The two sites have distinct tree species composition and richness, with relatively little species overlap. We collected 36 surface soil samples (0 to 15 cm depth) in three land use categories (cattle pasture, 20 year old secondary forest, and old secondary forest) at each site during the wet season. Cores were sampled at 10 m intervals along four replicate transects in each of the three land use categories at each site. This soil metabarcoding dataset was created using ITS primers (ITS1F and ITS2 (Gardes & Bruns 1993, White et al. 1990)). Data were processed using the R packages <em>DADA2</em>, <em>phyloseq</em>, <em>vegan</em>, and <em>microbiome</em>. Sample metadata includes soil chemistry and alpha diversity calculations for each sample
DOI: 10.25573/data.22337959.v1
title: Assembly of plant-associated soil microbial communities during succession in dry and moist Neotropical forests - ITS (Fungi) Data

description: Our study was conducted at two sites that represent dry (Los Santos) and moist (Agua Salud) tropical lowland forest types in Panama. The two sites have distinct tree species composition and richness, with relatively little species overlap. We collected 36 surface soil samples (0 to 15 cm depth) in three land use categories (cattle pasture, 20 year old secondary forest, and old secondary forest) at each site during the wet season. Cores were sampled at 10 m intervals along four replicate transects in each of the three land use categories at each site. This soil metabarcoding dataset was created using ITS primers (ITS1F and ITS2 (Gardes & Bruns 1993, White et al. 1990)). Data were processed using the R packages <em>DADA2</em>, <em>phyloseq</em>, <em>vegan</em>, and <em>microbiome</em>. Sample metadata includes soil chemistry and alpha diversity calculations for each sample
DOI: 10.25573/data.14188436
title: Assembly of plant-associated soil microbial communities during succession in dry and moist Neotropical forests - AMF (18S) Dataset

description: Our study was conducted at two sites that represent dry (Los Santos) and moist (Agua Salud) tropical lowland forest types in Panama. The two sites have distinct tree species composition and richness, with relatively little species overlap. We collected 36 surface soil samples (0 to 15 cm depth) in three land use categories (cattle pasture, 20 year old secondary forest, and old secondary forest) at each site during the wet season. Cores were sampled at 10 m intervals along four replicate transects in each of the three land use categories at each site. This soil metabarcoding dataset was created using 18S primers (AMV4.5NF and AMDGR (van Geel et al. 2014)). Data were processed using the R packages <em>DADA2</em>, <em>phyloseq</em>, <em>vegan</em>, and <em>microbiome</em>. Sample metadata includes soil chemistry and alpha diversity calculations for each sample
DOI: 10.25573/data.14188436.v1
title: Assembly of plant-associated soil microbial communities during succession in dry and moist Neotropical forests - AMF (18S) Dataset

description: Our study was conducted at two sites that represent dry (Los Santos) and moist (Agua Salud) tropical lowland forest types in Panama. The two sites have distinct tree species composition and richness, with relatively little species overlap. We collected 36 surface soil samples (0 to 15 cm depth) in three land use categories (cattle pasture, 20 year old secondary forest, and old secondary forest) at each site during the wet season. Cores were sampled at 10 m intervals along four replicate transects in each of the three land use categories at each site. This soil metabarcoding dataset was created using 18S primers (AMV4.5NF and AMDGR (van Geel et al. 2014)). Data were processed using the R packages <em>DADA2</em>, <em>phyloseq</em>, <em>vegan</em>, and <em>microbiome</em>. Sample metadata includes soil chemistry and alpha diversity calculations for each sample
DOI: 10.6084/m9.figshare.22087415
title: NanoString analysis of Mycosis Fungoides reveals individual molecular identity. BJD-2022-0618

description: <strong>Supplemental table 1. </strong>Features of the study population. <br> <strong>Supplemental figure 1.</strong> Genes differentially expressed in MF vs. inflammatory dermatitis. The upregulated/unchanged/downregulated genes for MF vs. inflammatory dermatitis, represented by volcano plots. <strong>Supplemental figure 2. </strong>Genes differentially expressed in early-stage MF samples vs. inflammatory dermatitis the upregulated/unchanged/downregulated genes for early MF vs. inflammatory dermatitis, represented by volcano plots.
DOI: 10.6084/m9.figshare.22087415.v1
title: NanoString analysis of Mycosis Fungoides reveals individual molecular identity. BJD-2022-0618

description: <strong>Supplemental table 1. </strong>Features of the study population. <br> <strong>Supplemental figure 1.</strong> Genes differentially expressed in MF vs. inflammatory dermatitis. The upregulated/unchanged/downregulated genes for MF vs. inflammatory dermatitis, represented by volcano plots. <strong>Supplemental figure 2. </strong>Genes differentially expressed in early-stage MF samples vs. inflammatory dermatitis the upregulated/unchanged/downregulated genes for early MF vs. inflammatory dermatitis, represented by volcano plots.
DOI: 10.5281/zenodo.7786846
title: Photon Showers in a High Granularity Calorimeter with Varying Incident Energy and Angle

description: Dataset of photon showers in the Si-W ILD Electromagnetic calorimeter, consisting of 30 layers<br> of active silicon sensors sandwiched between tungsten absorber layers. The incident energies vary uniformly in the range of 10-100 GeV, along with the incident angle which varies in the range of 90-30 degrees from the axis orthogonal to the calorimeter face. The incident point to the calorimeter face is fixed. The cells are projected to a regular grid of shape (z, x, y) = (30, 30, 60), where the z axis points into the calorimeter face, giving a total of 54k channels. In total, the file contains approximately 500k showers. The structure of the file is as follows: Group name <em><strong>ecal</strong></em> <em><strong>energy</strong></em> : Dataset{500k, 1} <strong><em>theta</em> </strong>: Dataset{500k, 1} <em><strong>layers</strong></em> : Dataset{500k, 30, 30, 60} The <strong><em>energy</em></strong> is the energy of the initial incident photon in units of GeV, <strong><em>theta</em></strong> is the incident angle of the incoming photon in units of radians and <strong><em>layers</em></strong> is the energy deposited in each cell in units of MeV
DOI: 10.5281/zenodo.7786845
title: Photon Showers in a High Granularity Calorimeter with Varying Incident Energy and Angle

description: Dataset of photon showers in the Si-W ILD Electromagnetic calorimeter, consisting of 30 layers<br> of active silicon sensors sandwiched between tungsten absorber layers. The incident energies vary uniformly in the range of 10-100 GeV, along with the incident angle which varies in the range of 90-30 degrees from the axis orthogonal to the calorimeter face. The incident point to the calorimeter face is fixed. The cells are projected to a regular grid of shape (z, x, y) = (30, 30, 60), where the z axis points into the calorimeter face, giving a total of 54k channels. In total, the file contains approximately 500k showers. The structure of the file is as follows: Group name <em><strong>ecal</strong></em> <em><strong>energy</strong></em> : Dataset{500k, 1} <strong><em>theta</em> </strong>: Dataset{500k, 1} <em><strong>layers</strong></em> : Dataset{500k, 30, 30, 60} The <strong><em>energy</em></strong> is the energy of the initial incident photon in units of GeV, <strong><em>theta</em></strong> is the incident angle of the incoming photon in units of radians and <strong><em>layers</em></strong> is the energy deposited in each cell in units of MeV
DOI: 10.5281/zenodo.7792288
title: Molecular dynamics-generated ensemble dataset of ubiquitin; for "PROTHON: A Local Order Parameter-Based Method for Efficient Comparison of Protein Ensembles"

description: The molecular dynamics-generated ensemble dataset (229Mb zip file) for ubiquitin, used in the manuscript "PROTHON: A Local Order Parameter-Based Method for Efficient Comparison of Protein Ensembles", submitted to the Journal of Chemical Information and Modeling (JCIM). The dataset consists of 6 .dcd files, and one .pdb file.