cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1131781.10fu
title: SH1131781.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1131783.10fu
title: SH1131783.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1131785.10fu
title: SH1131785.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.wte4z2
title: Occurrence Download

description: A dataset containing 38145964 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is South Africa",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 38145964 records from 1298 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013010-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3930475_d2.v1
title: Additional file 11: of Validation of whole-blood transcriptome signature during microdose recombinant human erythropoietin (rHuEpo) administration

description: Adaptive model analysis and ROC curve in gene expression changes of the 41 transcripts across 28 subjects (14 subjects × 2 trials) in the MDS. Red lines: individual limits as determined by the adaptive model for a specificity of 99%; blue line: actual test results. The first 1–14 graphs: subjects participated in the rHuEpo trial and following 15–28 graphs: the same subjects participated in the placebo trial. X-axis: 13 time points and y-axis: log2 gene expression. (ZIP 1076 kb)
DOI: 10.6084/m9.figshare.c.3930475_d2
title: Additional file 11: of Validation of whole-blood transcriptome signature during microdose recombinant human erythropoietin (rHuEpo) administration

description: Adaptive model analysis and ROC curve in gene expression changes of the 41 transcripts across 28 subjects (14 subjects × 2 trials) in the MDS. Red lines: individual limits as determined by the adaptive model for a specificity of 99%; blue line: actual test results. The first 1–14 graphs: subjects participated in the rHuEpo trial and following 15–28 graphs: the same subjects participated in the placebo trial. X-axis: 13 time points and y-axis: log2 gene expression. (ZIP 1076 kb)
DOI: 10.6084/m9.figshare.c.3930475_d1.v1
title: Additional file 10: of Validation of whole-blood transcriptome signature during microdose recombinant human erythropoietin (rHuEpo) administration

description: Adaptive model analysis and ROC curve in OFF-score across 28 subjects (14 subjects × 2 trials) in the MDS. Red lines: individual limits as determined by the adaptive model for a specificity of 99%; blue line: actual test results. Subject A, D, F. G, J, K, M, P, R, S, U, X, Z and AA participated in the rHuEpo trial; subject B, C, E, H, I, L, N, O, Q, T, V, W, X and AB participated in the placebo trial. X-axis: 13 time points and y-axis: OFF-scores. (ZIP 87 kb)
DOI: 10.6084/m9.figshare.c.3929101_d21.v1
title: Additional file 9: Table S14. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: Expression of PhARF family members in response to auxin treatment. (TXT 5Â kb)
DOI: 10.6084/m9.figshare.c.3929101_d21
title: Additional file 9: Table S14. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: Expression of PhARF family members in response to auxin treatment. (TXT 5Â kb)
DOI: 10.6084/m9.figshare.c.3929101_d16
title: Additional file 4: Table S9. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: Expression of PhYUC family members in response to auxin treatment. (TXT 1Â kb)
DOI: 10.6084/m9.figshare.c.3929101_d15.v1
title: Additional file 3: Table S8. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: List of the genes in the RNA-Seq analysis. (TXT 4491Â kb)
DOI: 10.6084/m9.figshare.c.3929101_d15
title: Additional file 3: Table S8. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: List of the genes in the RNA-Seq analysis. (TXT 4491Â kb)
DOI: 10.6084/m9.figshare.c.3929101_d13
title: Additional file 21: Table S26. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: The statistical enrichment of DEGs in the KEGG pathways. (TXT 4Â kb)
DOI: 10.6084/m9.figshare.c.3929101_d13.v1
title: Additional file 21: Table S26. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: The statistical enrichment of DEGs in the KEGG pathways. (TXT 4Â kb)
DOI: 10.6084/m9.figshare.c.3929101_d12.v1
title: Additional file 20: Table S25. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: Expression changes of SA related genes in response to exogenous auxin treatment. (TXT 3Â kb)
DOI: 10.6084/m9.figshare.c.3929101_d12
title: Additional file 20: Table S25. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: Expression changes of SA related genes in response to exogenous auxin treatment. (TXT 3Â kb)
DOI: 10.6084/m9.figshare.c.3929101_d10.v1
title: Additional file 19: Table S24. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: Expression changes of JA related genes in response to exogenous auxin treatment. (TXT 3Â kb)
DOI: 10.6084/m9.figshare.c.3929101_d3.v1
title: Additional file 12: Table S17. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: Expression of PhSAUR family members in response to auxin treatment. (TXT 1Â kb)
DOI: 10.6084/m9.figshare.c.3929101_d3
title: Additional file 12: Table S17. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: Expression of PhSAUR family members in response to auxin treatment. (TXT 1Â kb)
DOI: 10.6084/m9.figshare.c.3929101_d2.v1
title: Additional file 11: Table S16. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: Expression of putative PhGH3 members in response to auxin treatment. (TXT 824 bytes)
DOI: 10.6084/m9.figshare.c.3929101_d2
title: Additional file 11: Table S16. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: Expression of putative PhGH3 members in response to auxin treatment. (TXT 824 bytes)
DOI: 10.6084/m9.figshare.c.3929101_d1.v1
title: Additional file 10: Table S15. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: List of the auxin action related genes with expression change in response to exogenous auxin treatment. (TXT 5Â kb)
DOI: 10.6084/m9.figshare.c.3929101_d1
title: Additional file 10: Table S15. of Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

description: List of the auxin action related genes with expression change in response to exogenous auxin treatment. (TXT 5Â kb)
DOI: 10.6084/m9.figshare.c.3927880_d1
title: Additional file 1: of High-density lipoprotein cholesterol efflux capacity is inversely associated with cardiovascular risk: a systematic review and meta-analysis

description: Quality assessment of included studies. (XLS 36Â kb)
DOI: 10.6084/m9.figshare.c.3927880_d1.v1
title: Additional file 1: of High-density lipoprotein cholesterol efflux capacity is inversely associated with cardiovascular risk: a systematic review and meta-analysis

description: Quality assessment of included studies. (XLS 36Â kb)
DOI: 10.6084/m9.figshare.c.3927091_d1.v1
title: MOESM1 of Genotypic diversity, antimicrobial resistance and biofilm-forming abilities of Campylobacter isolated from chicken in Central China

description: Additional file 1: Table S1. The details of each Campylobacter isolates.
DOI: 10.6084/m9.figshare.c.3927091_d1
title: MOESM1 of Genotypic diversity, antimicrobial resistance and biofilm-forming abilities of Campylobacter isolated from chicken in Central China

description: Additional file 1: Table S1. The details of each Campylobacter isolates.
DOI: 10.6084/m9.figshare.c.3927088_d5
title: Additional file 5: of Long noncoding RNA NORAD, a novel competing endogenous RNA, enhances the hypoxia-induced epithelial-mesenchymal transition to promote metastasis in pancreatic cancer

description: Clinicopathological informationÂ of 33 PDAC. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3927088_d4.v1
title: Additional file 4: of Long noncoding RNA NORAD, a novel competing endogenous RNA, enhances the hypoxia-induced epithelial-mesenchymal transition to promote metastasis in pancreatic cancer

description: The expression of RhoA and miR-125a-3p in GSE32688. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3927088_d5.v1
title: Additional file 5: of Long noncoding RNA NORAD, a novel competing endogenous RNA, enhances the hypoxia-induced epithelial-mesenchymal transition to promote metastasis in pancreatic cancer

description: Clinicopathological informationÂ of 33 PDAC. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3927013_d1
title: Additional file 1: of Pancreatic cyst fluid harbors a unique microbiome

description: Detailed patient characteristics, samples characteristic of samples taken for NGS, gene accession numbers of Sanger sequenced samples and SRA numbers for the NGS selected samples, NGS sequenced V3-V4 variable regions of 16S rRNA. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3927013_d1.v1
title: Additional file 1: of Pancreatic cyst fluid harbors a unique microbiome

description: Detailed patient characteristics, samples characteristic of samples taken for NGS, gene accession numbers of Sanger sequenced samples and SRA numbers for the NGS selected samples, NGS sequenced V3-V4 variable regions of 16S rRNA. (XLSX 26 kb)
DOI: 10.5281/zenodo.10895797
title: MVPA and ML
DOI: 10.5281/zenodo.10895798
title: MVPA and ML
DOI: 10.6084/m9.figshare.c.3926905_d2
title: MOESM2 of Hemodynamics analysis of the serial stenotic coronary arteries

description: Additional file 2. CTA image data (part 2).
DOI: 10.6084/m9.figshare.c.3926905_d2.v1
title: MOESM2 of Hemodynamics analysis of the serial stenotic coronary arteries

description: Additional file 2. CTA image data (part 2).
DOI: 10.6084/m9.figshare.c.3926905_d1.v1
title: MOESM1 of Hemodynamics analysis of the serial stenotic coronary arteries

description: Additional file 1. CTA image data (part 1).
DOI: 10.6084/m9.figshare.c.3926905_d1
title: MOESM1 of Hemodynamics analysis of the serial stenotic coronary arteries

description: Additional file 1. CTA image data (part 1).
DOI: 10.6084/m9.figshare.c.3926881_d2
title: Additional file 2: Table S1. of Human papillomavirus in semen and the risk for male infertility: a systematic review and meta-analysis

description: Studies Included in the Meta-analysis and Their Characteristics by Region. This table should be placed after the line 152. (XLSX 33Â kb)
DOI: 10.15468/dl.vtqp59
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Corydoras haraldschultzi Knaack, 1962"
 ]
}

 The dataset includes 23 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035397-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3924787_d11.v1
title: Additional file 9: Table S8. of De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein

description: Pathway enrichment analysis of DEGs. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3924787_d10.v1
title: Additional file 8: Table S7. of De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein

description: A list of DEGs based on negative binomial distribution. P-value (&lt;0.01) and absolute value of log2FoldChange (&gt;2) were used as a cut-off. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3924787_d11
title: Additional file 9: Table S8. of De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein

description: Pathway enrichment analysis of DEGs. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3924787_d10
title: Additional file 8: Table S7. of De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein

description: A list of DEGs based on negative binomial distribution. P-value (&lt;0.01) and absolute value of log2FoldChange (&gt;2) were used as a cut-off. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3924787_d8
title: Additional file 6: Table S6. of De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein

description: Genes involved in environmental stress and immunity based on GO annotation. (XLSX 4058Â kb)
DOI: 10.6084/m9.figshare.c.3924787_d8.v1
title: Additional file 6: Table S6. of De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein

description: Genes involved in environmental stress and immunity based on GO annotation. (XLSX 4058Â kb)
DOI: 10.6084/m9.figshare.c.3924787_d7.v1
title: Additional file 5: Table S5. of De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein

description: KOG annotation of unigene. Annotated unigenes were categorized into 25 subgroups and listed in each sheet. (XLSX 1508Â kb)
DOI: 10.6084/m9.figshare.c.3924787_d7
title: Additional file 5: Table S5. of De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein

description: KOG annotation of unigene. Annotated unigenes were categorized into 25 subgroups and listed in each sheet. (XLSX 1508Â kb)
DOI: 10.6084/m9.figshare.c.3924787_d6.v1
title: Additional file 4: Table S4. of De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein

description: The number of annotated unigenes mapped to GO database. (XLSX 1027Â kb)
DOI: 10.6084/m9.figshare.c.3924787_d5.v1
title: Additional file 3: Table S3. of De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein

description: GO annotation of unigene. (XLSX 2004Â kb)
DOI: 10.6084/m9.figshare.c.3924787_d6
title: Additional file 4: Table S4. of De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein

description: The number of annotated unigenes mapped to GO database. (XLSX 1027Â kb)
DOI: 10.6084/m9.figshare.c.3924787_d5
title: Additional file 3: Table S3. of De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein

description: GO annotation of unigene. (XLSX 2004Â kb)
DOI: 10.6084/m9.figshare.c.3924787_d4.v1
title: Additional file 2: Table S2. of De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein

description: The unigenes annotated by BLASTx against Swiss-Prot database. (XLSX 54995Â kb)
DOI: 10.6084/m9.figshare.c.3924787_d3.v1
title: Additional file 1: Table S1. of De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein

description: The unigenes annotated by BLASTx against NCBI Nr database. (XLSX 59937Â kb)
DOI: 10.6084/m9.figshare.c.3924787_d4
title: Additional file 2: Table S2. of De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein

description: The unigenes annotated by BLASTx against Swiss-Prot database. (XLSX 54995Â kb)
DOI: 10.6084/m9.figshare.c.3924787_d3
title: Additional file 1: Table S1. of De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein

description: The unigenes annotated by BLASTx against NCBI Nr database. (XLSX 59937Â kb)
DOI: 10.6084/m9.figshare.c.3924739_d8
title: Additional file 6: Dataset 1. of Co-expression network analysis of the transcriptomes of rice roots exposed to various cadmium stresses reveals universal cadmium-responsive genes

description: Rice roots short-term Cd-responsive DEGs identified in previous three reports. (XLSX 621Â kb)
DOI: 10.6084/m9.figshare.c.3924739_d5.v1
title: Additional file 3: Table S3. of Co-expression network analysis of the transcriptomes of rice roots exposed to various cadmium stresses reveals universal cadmium-responsive genes

description: Primers for quantitative RT-PCR. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3924739_d4.v1
title: Additional file 2: Table S2. of Co-expression network analysis of the transcriptomes of rice roots exposed to various cadmium stresses reveals universal cadmium-responsive genes

description: Cd-responsive 1772 differentially expressed genes transcripts isoforms (DEGs) in rice roots exposed to Cd for 1Â h. (XLSX 186Â kb)
DOI: 10.6084/m9.figshare.c.3924739_d4
title: Additional file 2: Table S2. of Co-expression network analysis of the transcriptomes of rice roots exposed to various cadmium stresses reveals universal cadmium-responsive genes

description: Cd-responsive 1772 differentially expressed genes transcripts isoforms (DEGs) in rice roots exposed to Cd for 1Â h. (XLSX 186Â kb)
DOI: 10.6084/m9.figshare.c.3924739_d5
title: Additional file 3: Table S3. of Co-expression network analysis of the transcriptomes of rice roots exposed to various cadmium stresses reveals universal cadmium-responsive genes

description: Primers for quantitative RT-PCR. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3924739_d3.v1
title: Additional file 1: Table S1. of Co-expression network analysis of the transcriptomes of rice roots exposed to various cadmium stresses reveals universal cadmium-responsive genes

description: RNAseq information of rice roots under various Cd stresses conditions. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3924739_d2.v1
title: Additional file 11: Table S5. of Co-expression network analysis of the transcriptomes of rice roots exposed to various cadmium stresses reveals universal cadmium-responsive genes

description: The expression of 164 universal Cd-responsive DEGs in Cd response-specific module across 4 DEGs datasets. (XLSX 38Â kb)
DOI: 10.6084/m9.figshare.c.3924739_d1.v1
title: Additional file 10: Table S4. of Co-expression network analysis of the transcriptomes of rice roots exposed to various cadmium stresses reveals universal cadmium-responsive genes

description: One thousand eight hundred sixty-eight rice genes and transcripts in the Cd response-specific module generated by WGCNA. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.c.3924739_d3
title: Additional file 1: Table S1. of Co-expression network analysis of the transcriptomes of rice roots exposed to various cadmium stresses reveals universal cadmium-responsive genes

description: RNAseq information of rice roots under various Cd stresses conditions. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3924739_d2
title: Additional file 11: Table S5. of Co-expression network analysis of the transcriptomes of rice roots exposed to various cadmium stresses reveals universal cadmium-responsive genes

description: The expression of 164 universal Cd-responsive DEGs in Cd response-specific module across 4 DEGs datasets. (XLSX 38Â kb)