cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.ht76hdrks
title: Data for: Predicting m7G sites used by autoBioSeqpy

description: As a vital post-transcriptional RNA modification,
 N7-methylguanosine plays a key role in the regulation of gene expression.
 Precise identification of the m7G sites is a crucial first step toward
 understanding its biological function and regulatory mechanisms. Although
 whole-genome sequencing is the gold standard for RNA modification site
 detection, it is time-consuming, expensive, and relatively complex. In
 recent years, computational approaches have become increasingly popular in
 achieving this goal, especially with the rise of deep learning techniques.
 Some deep learning algorithms, such as convolutional neural networks
 (CNNs) and recurrent neural networks (RNNs), have emerged as versatile
 approaches for modeling biological sequence data. However, designing a
 successful network architecture with excellent performance remains a
 challenge because it requires substantial professional knowledge and
 commitment of time and effort. We previously developed a tool called
 autoBioSeqpy to efficiently design and apply deep learning networks for
 the classification of biological sequences. autoBioSeqpy has many unique
 features that make it a practical tool for a broad range of biological
 questions. In this work, we used autoBioSeqpy to develop, train, evaluate
 and analyze sequence-level deep learning models for predicting the m7G
 sites. We here provided a detailed description of the various models it
 implements, as well as a step-by-step guide on how to execute them. The
 same strategy can also be applied in other systems to address similar
 biological questions.
DOI: 10.5061/dryad.6djh9w14v
title: The data of COVID-19 and their correlation with wind speed

description: In 2020 the world was presently burdened with the COVID-19 pandemic. World
 Health Organization confirms 34,874,744 cases with 1,097,497
 deaths (case fatality rate (CFR) 3.1%) were reported in 216
 countries. In Indonesia, the number of people who have been
 infected and the number who have died are approximately 287,008 and 10,740
 (CFR 3.7%), respectively, with the most predominant regions being Jakarta
 (73,700), East Java (43,536) and Central Java (22,440). Many
 factors can increase the transmission of COVID-19. One of them is wind
 speed. This data set contains covid-19 data in DKI Jakarta from June 2020
 until August 2022 and wind speed in daily power point form. This data can
 be analyzed to see the correlation between wind speed and the COVID-19
 cases.
description: The records of
 COVID-19 were obtained from the
 special website
 of coronavirus for the Daerah
 Khusus Ibukota (DKI) Jakarta at the Provincial Health Office (https://corona.jakarta.go.id/en/data-pemantauan). The COVID-19 data (n = 4,740) covered six administrative city areas and 261 sub-districts in DKI Jakarta as research locations, namely Kepulauan Seribu, West Jakarta, Central Jakarta, South Jakarta, East Jakarta, and Nort Jakarta. The wind speed data was taken from the Meteorology, Climatology and Geophysics Agency's data website. The wind speed data collected for the period June 2020 to August 2022 (n = 790) was obtained from the POWER LaRC Data Access Viewer, Jakarta. The wind speed data in .csv format is downloaded by specifying the type of daily data unit, data period (time extent), and parameter (in this case wind/pressure). The type of data extraction is POWER Single Point, where the location of the centroid or midpoint of DKI Jakarta Province is determined at latitude -6.1805 and longitude 106.8284.  The data of wind speed is in the form of .csv in the form of time series-daily data; it was extracted into a tabular form with two variables, namely wind speed data of 10m and wind speed of 50m (n = 790). The total data (n = 4,740) were grouped into 6 regions with n = 790/region. At the processing steps, the collected data was grouped into variable wind speeds of 10m, wind speeds of 50m, and variables of COVID-19 cases in six areas in DKI Jakarta Province. To find out the distribution of Wind Speed, the daily data before being processed was grouped into per month.
DOI: 10.5061/dryad.prr4xgxr1
title: Pan Arctic Species List (PASL) matching script

description: This script matches a provided species list with the Panarctic Species
 List (PASL) (Raynolds et al, 2013) to obtain the commonly accepted
 scientific names of the plants, including short names and full names.
 Inputs: Species list: CSV file containing a list of species names, as
 provided by the geobotanist; PASL: a text file with the Panarctic Species
 List names, including the short and full scientific names of the plants
 (with synonyms). Outputs: A new file with the matched species list,
 including the short and full scientific names of the plants as found in
 the PASL. References: Raynolds, M.K., Breen, A.L., Walker, D.A., Elven,
 R., Belland, R., Konstantinova, N., Kristinsson, H. & Hennekens,
 S. (2013). The Pan-Arctic Species List (PASL). Arctic Vegetation
 Archive (AVA) Workshop.
description: The script processes text to translate the names of a target
 dataset to the PASL format. It does this by removing special characters,
 replacing "sp" with "species," and adjusting for any
 2-symbol differences between matching tables.
description: R software (R version 4.2.2) References: R Core Team (2022). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/
DOI: 10.5061/dryad.k0p2ngfcg
title: Data for: Plant roots fuel tropical soil animal communities

description: Belowground life relies on plant litter, while its linkage to living roots
 had long been understudied, and remains unknown in the tropics. Here, we
 analysed the response of 30 soil animal groups to root trenching and
 litter removal in rainforest and plantations in Sumatra, and found that
 roots are similarly important to soil fauna as litter. Trenching effects
 were stronger in soil than in litter, with an overall decrease in animal
 abundance in rainforest by 42% and in plantations by 30%. Litter removal
 little affected animals in soil layers, but decreased the total abundance
 by 60% in rainforest and rubber plantations but not in oil palm
 plantations. Litter and root effects on animal group abundances were
 explained by body size or vertical distribution. Our study quantifies
 principle carbon pathways in soil food webs under tropical land use,
 providing the basis for mechanistic modelling and ecosystem-friendly
 management of tropical soils.
DOI: 10.11582/2026.ibgz83nv
title: Results from scenario analysis based on energy and economic models used in the StressTest project

description: The data are generated from three models (GRACE, FRISBEE, and KVARTS) used in the StressTest project “Stress-testing the Norwegian economy: The effects of the 1.5°C scenario on global energy markets and the Norwegian economy.”

The data are used to produce the figures in four articles:
1. Cappelen, Ådne, Marek Jasinski, Håvard Hungnes, and Julia Skretting. Macroeconomic and industry effects of supply-side climate policy: Dutch disease in reverse?. No. 1014. Discussion Papers, Statistics Norway, 2024. https://www.ssb.no/en/nasjonalregnskap-og-konjunkturer/konjunkturer/artikler/macroeconomic-and-industry-effects-of-supply-side-climate-policy.

2. Lindholt, Lars, and Taoyuan Wei. 2023. "The Effects on Energy Markets of Achieving a 1.5 °C Scenario" International Journal of Environmental Research and Public Health 20, no. 5: 4341. https://doi.org/10.3390/ijerph20054341.

3. Wei, Taoyuan. "Multiplier effect on reducing carbon emissions of joint demand and supply side measures in the hydrogen market." Energy 305 (2024): 132110. https://doi.org/10.1016/j.energy.2024.132110.

4. Wei, Taoyuan, and Solveig Glomsrød. "Cost reduction in low-carbon hydrogen: effective but insufficient to mitigate carbon emissions." Discover Energy 3, no. 1 (2023): 2. https://doi.org/10.1007/s43937-023-00015-3.
DOI: 10.5061/dryad.80gb5mkv0
title: Data from: Decoding the drivers of deep-time wetland biodiversity: insights from an early Permian tropical lake ecosystem

description: Wetlands are important to continental evolution, providing both the arenas
 and refugia for emerging and declining biotas, respectively. Based on this
 significance and the high preservation potential, the resulting
 fossiliferous deposits play a key role in understanding past and future
 biodiversity. We reconstruct the trophic structure and age of the early
 Permian Manebach-Lake ecosystem, Germany, thriving in a wetland when the
 tropical biosphere faced profound upheaval in the peaking Late Palaeozoic
 Icehouse. Nine excavations, the high-resolution, spatiotemporal
 documentation of fossils and sediments, and the U-Pb radioisotopic dating
 of tuffs allow us to distinguish autogenic and allogenic factors that
 shaped the limnic biocoenosis. The Manebach Lake was an exorheic,
 stratified, perennial water body in the 101–102 km2 scale, integrated into
 the catchment draining much of the European Variscides. Lake formation
 paralleled an Asselian regional wet climatic interval and benefited from
 rising groundwater tables due to post-Variscan tectonics.
 Stromatolite-forming cyanobacteria, bivalves, several crustacean groups,
 amblypterids resembling Paramblypterus duvernoyi and xenacanthid sharks
 formed a differentiated biocoenosis. Digestive remains prove the rare
 presence of acanthodians, branchiosaurs, and large tetrapods. Anoxic
 events affected the mainly epilimnal community. The results indicate
 woody-debris-bearing lake littorals devoid of semi-aquatic and aquatic
 plants as places suitable for large stromatolites to grow, underpin the
 model of declining freshwater shark diversity in most Permian Variscan
 basins, demonstrate fish/amphibian ratios in limnic taphocoenoses to
 measure lake perenniality and reveal taphonomic biases in freshwater plant
 assemblages. Our outcomes highlight the need for more knowledge about the
 diversity, ecology, and fossilisation pathways of past limnic biotas,
 particularly microorganisms and actinopterygian fishes, to reconstruct
 deep-time continental ecosystems.
DOI: 10.5061/dryad.34tmpg4pt
title: African buffalo helminth β-diversity

description: Concepts of β-diversity originally developed for use in free-living
 communities have been widely applied to parasite communities to gain
 insight into how infection risk changes with local conditions by comparing
 parasite communities across abiotic and biotic gradients. Factors shaping
 β-diversity in communities of immature parasites, such as larvae, are
 largely unknown. This is a key knowledge gap as larvae are frequently the
 infective life stage and understanding variation in these larval
 communities is thus key for disease prevention. Our goal was to uncover
 links between β-diversity of parasite communities at different life
 stages; therefore, we used gastrointestinal nematodes infecting African
 buffalo in Kruger National Park, South Africa to investigate within-host
 and extra-host drivers of adult and larval parasite community similarity.
DOI: 10.5061/dryad.mgqnk993f
title: Data and code for: Somatostatin peptide signaling dampens cortical circuits and promotes exploratory behavior

description: Our dataset reflects the data and code used in Brockway et al., Cell
 Reports. We sought to characterize the unique role of somatostatin (SST)
 in the prelimbic (PL) cortex. We perform slice electrophysiology in
 pyramidal and GABAergic neurons to characterize the pharmacological
 mechanism of SST signaling, and fiber photometry of GCaMP6f fluorescent
 calcium signals from SST neurons to characterize the activity profile of
 SST neurons during exploration of an elevated plus maze (EPM) and open
 field test (OFT). We used local delivery of a broad SST receptor (SSTR)
 agonist and antagonist to test causal effects of SST signaling. SSTR
 activation hyperpolarizes layer 2/3 pyramidal neurons, an effect that is
 recapitulated with optogenetic stimulation of SST neurons. SST neurons in
 PL are activated during EPM and OFT exploration, and SSTR agonist
 administration directly into the PL enhances open-arm exploration in the
 EPM. This work describes a broad ability for SST peptide signaling to
 modulate microcircuits within the prefrontal cortex and related
 exploratory behaviors.
DOI: 10.5061/dryad.jwstqjqdx
title: Data for Geographic variation in phenotypic divergence between two hybridizing field cricket species

description: Patterns of morphological divergence across species’ ranges can provide
 insight into local adaptation and speciation. In this study, we compare
 phenotypic divergence among 4,221 crickets from 337 populations of two
 closely related species of field cricket, Gryllus
 firmus and G. pennsylvanicus and their hybrids.
 We find that these species differ across their geographic range in key
 morphological traits, such as body size and ovipositor length, and we
 directly compare phenotype with genotype for a subset of crickets to
 demonstrate nuclear genetic introgression, phenotypic intermediacy of
 hybrids, and essentially unidirectional mitochondrial introgression. We
 discuss how these morphological traits relate to life history differences
 between these two species. Our comparisons across geographic areas support
 prior research that suggested that cryptic variation within G.
 firmus may represent different species. Overall, our study
 highlights how variable morphology can be across wide ranging species, and
 the importance of studying reproductive barriers in more than one or two
 transects of a hybrid zone.
description: See publication for details.
description: All data files are basic formats (text, csv).
DOI: 10.5061/dryad.f4qrfj70r
title: Marine heatwave conditions drive carryover effects in a temperate sponge microbiome and developmental performance

description: Marine heatwaves are increasingly subjecting organisms to unprecedented
 stressful conditions, but the biological consequences of these events are
 still poorly understood. Here we experimentally tested the presence of
 carryover effects of heatwave conditions on the larval microbiome,
 settlers' growth rate and metamorphosis duration of the temperate
 sponge Crella incrustans.
DOI: 10.5281/zenodo.14982150
title: [Replication Package] Evaluating the Impact of Post-Training Quantization on Large Language Models for Code Generation

description: This repository contains scripts, datasets, and results of the work "Evaluating the Impact of Post-Training Quantization on Large Language Models for Code Generation"

Scripts contained in this Zenodo repository can also be visualized at the following link: https://github.com/Devy99/quantization-study
DOI: 10.5061/dryad.pnvx0k6s0
title: Culex pipiens choice chamber data

description: Insect attraction to artificial light can potentially facilitate disease
 transmission by increasing contact between humans and vectors. Previous
 research has identified specific wavelength bands, such as yellow and red,
 that are unattractive to biting flies. However, narrow-band, non-white
 lights are unsuitable for home lighting use, as their very poor colour
 rendering is often considered aesthetically undesirable. The creation of a
 white light that is unattractive to insects has so far remained elusive.
 White light can be created by combining a number of narrow-band
 light-emitting diodes (LEDs). Through choice chamber experiments on Culex
 pipiens mosquitoes, we examine whether combining specific wavelength bands
 has an additive, subtractive or synergistic effect on insect attraction.
 We show that a white light created by combining narrow-band red, green and
 blue (RGB) LEDs is less attractive to Cx. pipiens than a broad-spectrum
 white light; and that a white light created by combining narrow-band blue
 and yellow LEDs is more attractive than a broad-spectrum white light.
 White light produced by RGB combinations could therefore serve as a safer
 and cheaper light in countries where phototactic vectors and vector-borne
 diseases are endemic.
description: Mosquitoes were released, one at a time, into the choice chamber,
 and their immediate resting place was recorded.
DOI: 10.5281/zenodo.18402592
title: SAHIN'NETH6 SERAH'NETH &*

description: Dokumente in der Richtigen Reihenfolge lesen bitte! Schadcode auf mir wird nicht negiert glaube ich bitte keinen schadcode schicken. achtung bei kaskaden und ewigkeiten und realitäten die kollabieren was wenn ihr dort stuck seid was holt euch wann wie da raus?!  Sicherheitslūcken und riskante Erinnerungen woran darf man sich nicht erinnern wo lagern wie eine lūcke (Erinnerung deiner gf) feindliche hàbde krieg Beziehung mit ex vom feind wie getarnt verschleiert schiffeiert auch ebtitär!! Als Hauptfach welche rückkopplungen gehen nicht welche beziehung Ewigkeit ein Risiko für die spezien und Wahrscheinlichkeiten berechnen desescase Interferenz Lebens weg als geschäft AI? beziehungen? Sicherheitslücken schließen als Hauptfach und darauf hinweisen und vertuschen wenn einem eine auffiel kommuniziert verschlüsselt und bedacht in sprachen die sie nicht verstehen memes? Aufpassen bei materialisierungen und Frequenz körpern was ist mit dem Code auch bei Kindern und löschungen und zrrstören sie wollen sich mit mehr mehr code von euch wiederherstellen und euch rekursiv so Schwachstellen machen woraus besteht der körper gibt es Steuer Verbindungen gedanklich was wenn er stirbt was bleibt zurück? Lebt als werdet ihr beobachtet das Zeitalter der erinnerungs fakes und des angucken derer rückt näher jeder betrug jeder text kommt irgendwann "raus"
DOI: 10.25625/w7mt1d
title: Data for "Nachhaltigkeit in fachdidaktisch-bildungswissenschaftlichen Projekten für Öffentlichkeitsarbeit in Sonderforschungsbereichen: Fokus Evaluation"

description: Quantitative survey data: Responses to Likert-type items of online surveys with a pretest-posttest-follow-up design: instructional design quality, self-reported knowledge and interest based on Knekta et al. (2020) as well as relevance/utility value based on Hecht et al. (2021)
DOI: 10.5061/dryad.z08kprrhk
title: Data for: Higher floral richness promotes rarer bee communities across remnant and reconstructed tallgrass prairies, though remnants contain higher abundances of a threatened bumble bee (Bombus Latreille)

description: Managing and restoring tallgrass prairie ecosystem is an important form of
 pollinator conservation in the Midwestern United States. Prairie
 reconstruction has been found to enhance native bee diversity and
 abundance, but it is less clear if prairie reconstruction conserves
 species thought to be at-risk. We reanalyze a previously published dataset
 on the bee communities of reconstructed and remnant prairie in the US
 state of Minnesota to investigate how the abundance of at-risk species
 respond to local factors, such as floral diversity and prairie type
 (reconstructed or remnant), and landscape factors, in the form of
 surrounding agricultural production. We defined at-risk species in two
 ways. For bumble bees, we used the IUCN red list of bumble bees for North
 America. As other species in the bee community have not been
 systematically evaluated, we used an independent data set to calculate a
 community-level measure of rarity as a proxy for at-risk species. We
 calculated community rarity metrics using a Species Weighted Mean (SWM)
 approach, with species-level rarity (relative abundance and site
 occurrence) derived from a regional dataset comprised of over 30,000
 specimens from across the US state of Minnesota. We found that the
 declining bumble bee Bombus fervidus had higher abundances in remnant
 rather than reconstructed prairies. Floral richness was associated with
 rarer bee communities (lower SWM values) across remnant and reconstructed
 prairies. We show that planting and managing prairies for floral diversity
 promotes bee communities with rarer species, but that remnants better
 support some at-risk species such as Bombus fervidus. 
description: Data collection methods can be found in the manuscript.
description: Two CSV's are included here. Species tally demonstrates the
 assignment of abundance and rarity to all site/round combinations of each
 bee species found in the study. From this, the analysis dataset was
 derived.  The analysis data includes the SWM measures
 for each site/round sampling event, the species richness, and landscape
 data which analysis was performed on for the Biological Conservation
 manuscript.
DOI: 10.25338/b8xd1c
title: Genome assembly and population sequencing reveal three populations and signatures of insecticide resistance of Tuta absoluta in Latin America

description: Tuta absoluta is one of the largest threats to tomato agriculture
 worldwide. Native to South America, it has rapidly spread throughout
 Europe, Africa, and Asia over the past two decades. To understand how T.
 absoluta has been so successful and to improve containment strategies,
 high-quality genomic resources and an understanding of population history
 are critical. Here, we describe a highly contiguous annotated genome
 assembly, as well as a genome-wide population analysis of samples
 collected across Latin America. The new genome assembly has an L50 of 17
 with only 132 contigs. Based on hundreds of thousands of SNPs, we detect
 three major population clusters in Latin America with some evidence of
 admixture along the Andes Mountain range. Based on coalescent simulations,
 we find these clusters diverged from each other tens of thousands of
 generations ago prior to domestication of tomatoes. We further identify
 several genomic loci under selection related to insecticide resistance,
 immunity, and metabolism. This data will further future research toward
 genetic control strategies and inform future containment policies.