cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24261034.v3
title: Testing effects of bottom-up factors, grazing, and competition on New Zealand rocky intertidal algal communities

description: Top-down and bottom-up factors and their interaction highlight the interdependence of resources and consumer impacts on food webs and ecosystems. Variation in the strength of upwelling-mediated ecological controls (i.e., light availability and herbivory) between early and late succession stages are less well understood from the standpoint of influencing algal functional group composition. We experimentally tested the effect of light, grazing, and disturbance on rocky intertidal turf-forming algal communities. Studies were conducted on the South Island of New Zealand at Raramai on the east coast (a persistent downwelling region) and Twelve Mile Beach on the west coast (an intermittent upwelling region). Herbivory, light availability, and algal cover were manipulated and percent cover of major macroalgal functional groups and sessile invertebrates were measured monthly from October 2017 to March 2018. By distinguishing between algal functional groups and including different starting conditions in our design, we found that the mosaic-like pattern of bare rock intermingled with diverse turf-forming algae at Twelve Mile Beach was driven by a complex array of species interactions, including grazing, predation, pre-emptive competition and interference competition, colonization rates, and these interactions were modulated by light availability and other environmental conditions. Raramai results contrasted with those at Twelve Mile Beach in showing stronger effects of grazing and relatively weak effects of other interactions, low colonization rates of invertebrates, and light effects limited to crustose algae. Our study highlights the potential importance of an upwelling-mediated 3-way interaction among herbivory, light availability, and pre-emption in structuring contrasting low rocky intertidal macroalgal communities.
DOI: 10.6084/m9.figshare.26863594.v1
title: A robustly rooted tree of eukaryotes reveals their excavate ancestry [Data]

description: Supplementary data for the manuscript: "A robustly rooted tree of eukaryotes reveals their excavate ancestry"<b>Folder/file descriptions:</b><br><br><b>Single protein datasets - unaligned: </b>contains unaligned protein sequences in FASTA format for all individual marker proteins<b>Single protein datasets - aligned: </b>contains protein sequences in FASTA format for all individual marker proteins after alignment with PREQUAL and MAFFT<br><b>Single proteins datasets - aligned and trimmed: </b>contains protein sequences in FASTA format for all individual marker proteins after alignment with PREQUAL and MAFFT<b> </b>and trimming with BMGE<br><b>Models: </b>contains all phylogenetic models generated for this study<br><b>Scripts: </b>contains all custom scripts<br><b>Phylogenomic supermatrices:</b> contains all phylogenomic supermatrices used for all analyses<br><b>Anae+ phylogenetic trees: </b>contains all phylogenetic trees estimated from the concatenated dataset that includes <i>Anaeramoeba </i>(Anae+)<br><b>Anae- phylogenetic trees: </b>contains all phylogenetic trees estimated from the concatenated dataset that does <b>not </b>include <i>Anaeramoeba</i> (Anae-)<br><b>Simulated Alignments With Gaps: </b>contains 100 alignments simulated from the consensus tree (OpiDip+/<i>Anaeramoeba</i>) with the gap pattern from the original alignment preserved<br><b>Simulated Alignments Without Gaps: </b>contains 100 alignments simulated from the consensus tree (OpiDip+/<i>Anaeramoeba</i>)<b> </b>with no gaps<b>Hemimastix_sequences.fasta: </b>FASTA file of all sequences from <i>Hemimastix kukwesjijk</i> used in the final dataset analyses
DOI: 10.6084/m9.figshare.27851130.v1
title: Hydrolysis Datasets from HEPOM paper.

description: Datasets from HEPOM Paper. Includes train/test sets from combined, neutral(qm9+alchemy), protonated, and hydroxylated datasets.
DOI: 10.6084/m9.figshare.27979176.v1
title: 5000 original data without names.sav

description: The original data of the manuscript "The distribution and trend of corneal refractive parameters with age in normal eyes based on Fourier analysis of videokeratography data."
DOI: 10.6084/m9.figshare.5554594.v1
title: Experiment HaLT-SubjectF-160203-6States

description: Experiment in which subject performed 6 imageries of left and right hand motion, left and right leg motion, tongue motion, and a passive state.
DOI: 10.17632/kycndg3djg
title: Serum biomarkers for prediction and diagnosis of preeclampsia; a meta-analysis, data set.

description: This meta-analysis was conducted to determine the diagnostic utility of serum biomarkers in preeclampsia (PE). A systematic search was performed on the PubMed literature database and chain references were retrieved. Results: The number of articles retrieved from PubMed was 398. After reading the abstracts, 272 were excluded; of these, six lacked full text in English, 11 were animal studies, 54 were review articles, 19 were abstracts from posters, and 182 were not relevant to the topic. The full texts of 126 articles were read and a further 37 articles were excluded. Thus, 89 studies were identified after reading their full texts. An additional 47 studies were identified based on chain referencing and their full texts were read. The data of a total of 136 studies were entered in the excel datasheets and evaluated. Finally, 25 studies reporting on 13 biomarkers were selected for the meta-analysis. 1. PlGF: In seven studies, the combined effect depicted PlGF was 2.31 times lower in the preeclampsia compared to the controls; p=0.017 2. sFlt: In nine studies, the combined effect showed sFlt was 3.41 times higher in the preeclampsia, compared to the controls; p&lt;0.001 3. sFlt/ PlGF: In four studies, the combined effect model revealed 7.33 times higher value in the preeclampsia compared to the controls; p&lt;0.001 4. sEng: Seven studies evaluated, the combined effect showed sEng to be 2.69 times higher in the preeclampsia; p=0.004 5. HDL: Eight studies evaluated, the pooled effect of HDL displayed a negative effect on the preeclampsia; p=0.011 6. LDL: Five studies analyzed; the pooled effect, 0.317, was not significant; p=0.178 7. Total cholesterol: Four studies assessed, no significant difference between PE and controls, p=0.397 8. Triglycerides: The combined random effect model of seven studies revealed that biomarker was 0.28 times higher in the preeclampsia; p=0.065 9. Adiponectin: Five studies evaluated, 1.89 times lower value in PE; p=0.011. 10. Leptin: Five studies selected, random effect model showed a 1.74 times higher effect of leptin in the preeclampsia, p&lt;0.001 11. APO-A: Four studies were analyzed, no significant difference between the preeclamptic patients and the controls, p=0.175 12. APO-B: In three studies, a significant difference was identified between the preeclamptic patients and the controls, p=0.011 13. TNF: Three studies, no significant difference between the preeclamptic patients and the controls, p=0.84 Conclusion In this study, the values of the serum biomarkers sFlt, PlGF, sFlt/PlGF, HDL, adiponectin, leptin, triglycerides, and APO-B differed significantly between the preeclampsia patients and the pregnant controls. These findings demand advanced evaluation of biomarkers to enhance the diagnostic screening for preeclampsia.
DOI: 10.17632/pf996bc578
title: Merkel Cell Carcinoma in Skin of Color Patients: A Case Series

description: Supplemental Figures
DOI: 10.17632/zjhhgpnb4n
title: Data for: Core Temperature Modelling and Monitoring of Lithium-ion Battery in the Presence of Sensor Bias

description: 1) This supplementary file is the simulation program for the Applied Energy submission "Core Temperature Modelling and Monitoring of Lithium-ion Battery in the Presence of Sensor Bias"; 2) The simulation file can run well under the Environment of MATLAB R2018b 3）The system identifcation of nonliear model is in "MOGA_coefficient_with_radiator.m" 3) By executing the following commands, &gt;&gt; UKF_temp() &gt;&gt; EUKF_temp_bias() One can directly get the results shown in Fig. 8. For other figures in Section 3, the codes should be accordingly modifed. 4) MATLAB is a registered trademark is a trademark of The MathWorks, Inc.
DOI: 10.6084/m9.figshare.14204648.v1
title: Supplemental Table S4

description: This data table shows the relative abundance of each annotated metabolite analyzed using LC/MS-MS.
DOI: 10.6084/m9.figshare.14288075.v1
title: Phytotoxic effects of aqueous leaf extracts of four Myrtaceae species on three weeds

description: Research on allelopathic interactions can be useful in the search for phytotoxins produced by plants that may be employed as natural herbicides. The aim of this study was to assess the phytotoxic action of aqueous leaf extract of Blepharocalyx salicifolius, Myrcia multiflora, Myrcia splendens and Myrcia tomentosa on the germination and development of three weeds. The working hypothesis was that leaf extracts of Myrtaceae may negatively influence the development of weed species. Aqueous leaf extracts at 5 and 10% (g mL-1) were tested on the germination and growth of Euphorbia heterophylla, Echinochloa crus-galli and Ipomoea grandifolia and compared with the herbicide oxyfluorfen and distilled water (control). The most extracts caused pronounced delays in seed germination and inhibited the growth of seedlings of E. heterophylla; I. grandifolia and E. crus-galli, with the last target species had no growth shoot inhibited by the extracts. In this study, the potential and efficiency of the tested aqueous leaf extracts were evident because they were more phytotoxic to the weeds than the herbicide. Thus, the aqueous extracts of leaves from Myrtaceae species show potential for the isolation of active compounds that can be used for the production of natural herbicides in the future.
DOI: 10.6084/m9.figshare.20099951.v2
title: Nearby Space Objects Name_Distance_ Redshift_Temperature

description: The data includs the distance, temperature, and Redshift of 93,060 nearby space objects, including stars, quasars, white dwarfs, and carbon stars. The objects' temperatures are between 671 and 99,575 K, and the distances of the objects are between 413.13 and 0.5 (mas). We have retrieved this information from almost 2,200,000 records. In addition, we have added two new columns for providing equivalent distances in the light year and peak frequency of the black body. We have excluded data from space objects whose temperature doesn’t exist and space objects whose Redshift is less than zero (Blueshift). All data are in a simple table in a Microsoft Access Database. Also, a copy of the data is represented in an excel file. A text file includes the basic script for downloading data. <br> For ethic add <strong>Ethics statements and Acknowledgments</strong> <strong>Acknowledgments</strong> This research has made use of the SIMBAD database, operated at CDS, Strasbourg, France <sub>2000,A&AS,143,9 </sub>, "The SIMBAD astronomical database", Wenger et al.
DOI: 10.6084/m9.figshare.24064410.v1
title: Prism rather than tetrahedron: low-energy structures for gaseous gold clusters Au<sub>10</sub>(O<sub>2</sub>)<sub>n</sub><sup>+</sup> by density functional calculations

description: The purpose of this study is to reveal the adsorption mechanism of oxygen molecules on gold clusters. density functional theory is employed to investigate the low-energy structure of multiple O<sub>2</sub> adsorption on the Au<sub>10</sub><sup>+</sup> cluster and findings are compared with IR spectra. The nature of bonding of the O<sub>2</sub> molecule and Au<sub>10</sub><sup>+</sup> cluster has been characterised through several metrics like binding energy, dissociation energy, bond length, and vibrational frequencies. The result shows that the lowest-energy structures are prism-shaped rather than tetrahedron-shaped, where only one O<sub>2</sub> is chemically adsorbed while others are physically adsorbed. Chemically adsorbed η<sup>2</sup>-O<sub>2</sub> behaves like free O<sub>2</sub><sup>–</sup>, forming a single electron π bond with Au<sub>10</sub><sup>+</sup>, while physically adsorbed η<sup>1</sup>-O<sub>2</sub> does not result in an effective chemical bond and behaves like free O<sub>2</sub>. This study provides insights into the mechanism of oxygen molecule adsorption on gold clusters and can contribute to further research on the catalytic mechanism of gold clusters. <b>Highlights</b>Lowest energy structures are prism-shaped rather than tetrahedron-shaped, which is supported by IR spectrum and chemical hardness.Chemically adsorbed O<sub>2</sub> is activated and displays structural and spectral features of free O<sub>2</sub><sup>–</sup>, while physically adsorbed O<sub>2</sub> is close to free O<sub>2</sub> in vibrational frequency and bond length.Chemical adsorption is equivalent to a single electron π bond while physical adsorption forms no effective chemical bond due to the lack of electronic pairing between Au<sub>10</sub><sup>+</sup> and O<sub>2</sub>. Lowest energy structures are prism-shaped rather than tetrahedron-shaped, which is supported by IR spectrum and chemical hardness. Chemically adsorbed O<sub>2</sub> is activated and displays structural and spectral features of free O<sub>2</sub><sup>–</sup>, while physically adsorbed O<sub>2</sub> is close to free O<sub>2</sub> in vibrational frequency and bond length. Chemical adsorption is equivalent to a single electron π bond while physical adsorption forms no effective chemical bond due to the lack of electronic pairing between Au<sub>10</sub><sup>+</sup> and O<sub>2</sub>.
DOI: 10.6084/m9.figshare.28916528.v2
title: 1868_1877_marigrams

description: These files contain the corrected sea level time series (marigrams) used in the study "Large size of two 19th-century Chile–Peru earthquakes inferred from trans-Pacific tsunami records", published in Geophysical Research Letters by Carvajal et al.<br>Corresponding authors: Matías Carvajal (matias.carvajal@pucv.cl)
DOI: 10.6084/m9.figshare.5123551.v1
title: Supplementary Material for: Patterns and Predictors of Early Mortality in Incident Hemodialysis Patients: New Insights

description: <b><i>Background:</i></b> Incident hemodialysis patients have the highest mortality in the first several months after starting dialysis treatments. We hypothesized that the patterns and risk factors associated with this early mortality differ from those in later dialysis therapy periods. <b><i>Methods:</i></b> We examined mortality patterns and predictors during the first several months of hemodialysis treatment in 18,707 incident patients since the first week of hemodialysis therapy and estimated the population attributable fractions for selected time periods in the first 24 months. <b><i>Results:</i></b> The 18,707 incident hemodialysis patients were 45% women and 54% diabetics. The standardized mortality ratios (95% confidence interval) in the 1st to 3rd month of hemodialysis therapy were 1.81 (1.74–1.88), 1.79 (1.72–1.86), and 1.34 (1.27–1.40), respectively. The standardized mortality ratio reached prevalent mortality only by the 7th month. No survival advantage for African Americans existed in the first 6 months. Patients with low albumin &lt;3.5 g/dl had the highest proportion of infection-related deaths while patients with higher albumin levels had higher cardiovascular deaths including 76% of deaths during the first 3 months. Use of catheter as vascular access and hypoalbuminemia &lt;3.5 g/dl explained 34% (17–54%) and 33% (19–45%) of all deaths in the first 90 days, respectively. <b><i>Conclusions:</i></b> Incident hemodialysis patients have the highest mortality during the first 6 months including 80% higher death risk in the first 2 months. The presence of a central venous catheter and hypoalbuminemia &lt;3.5 g/dl each explain one third of all deaths in the first 90 days.
DOI: 10.6084/m9.figshare.5125960.v1
title: Supplementary Material for: Systematic Screening of Plant Extracts from the Brazilian Pantanal with Antimicrobial Activity against Bacteria with Cariogenic Relevance

description: This study proposes a bioprospection methodology regarding the antimicrobial potential of plant extracts against bacteria with cariogenic relevance. Sixty extracts were obtained from ten plants - (1) <i>Jatropha weddelliana</i>, (2) <i>Attalea phalerata</i>, (3) <i>Buchenavia tomentosa</i>, (4) <i>Croton doctoris</i>, (5) <i>Mouriri elliptica</i>, (6) <i>Mascagnia benthamiana</i>, (7) <i>Senna aculeata</i>, (8) <i>Unonopsis guatterioides</i>, (9) <i>Allagoptera leucocalyx</i> and (10) <i>Bactris glaucescens</i> - using different extraction methods - (A) 70° ethanol 72 h/25°C, (B) water 5 min/100°C, (C) water 1 h/55°C, (D) water 72 h/25°C, (E) hexane 72 h/25°C and (F) 90° ethanol 72 h/25°C. The plants were screened for antibacterial activity at 50 mg/ml using the agar well diffusion test against <i>Actinomyces naeslundii</i> ATCC 19039, <i>Lactobacillus acidophilus</i> ATCC 4356, <i>Streptococcus gordonii</i> ATCC 10558, <i>Streptococcus mutans</i> ATCC 35688, <i>Streptococcus sanguinis</i> ATCC 10556, <i>Streptococcus sobrinus</i> ATCC 33478 and <i>Streptococcus mitis</i> ATCC 9811. The active extracts were tested to determine their minimum inhibitory concentration (MIC), minimum bactericidal concentration (MBC), cytotoxicity and chemical characterization. Forty-seven extracts (78%) were active against at least one microorganism. Extract 4A demonstrated the lowest MIC and MBC for all microorganisms except <i>S. gordonii</i> and the extract at MIC concentration was non-cytotoxic. The concentrated extracts were slightly cytotoxic. Electrospray ionization with tandem mass spectrometry analyses demonstrated that the extract constituents coincided with the mass of the terpenoids and phenolics. Overall, the best results were obtained for extraction methods A, B and C. The present work proved the antimicrobial activity of several plants. Particularly, extracts from <i>C. doctoris</i> were the most active against bacteria involved in dental caries disease.
DOI: 10.17632/f4kndmp8c5
title: MicroRNAs as prognostic biomarkers in patients with diffuse large B-cell lymphoma

description: MicroRNAs as prognostic biomarkers in patients with diffuse large B-cell lymphoma，Relevant raw data and codes, etc.
DOI: 10.6084/m9.figshare.27722280.v1
title: <b>Metagenome-Assembled Genomes of Pig Fecal Samples in Nine European Countries: Insights into Antibiotic Resistance Genes and</b><b>Viruses</b>

description: 181 pig feces Metagenome-Assembled Genomes
DOI: 10.6084/m9.figshare.27948615.v1
title: CRC db

description: CRC dataset
DOI: 10.6084/m9.figshare.28464458.v1
title: Mexico's High Resolution Climate Database (MexHiResClimDB): Monthly and yearly normals of Tmin, Tavg, Tmax and precipitation in Mexico for the 1961-1990 period

description: Monthly and yearly normals of Tmin, Tavg, Tmax and precipitation in Mexico for the 1961-1990 period. These normals were computed from the monthly values of the MexHiResClimDB which were in turn determined from the daily gridded values. <br>Filesmonthlynorm6190precip.zip Precipitation monthly normals, 1961-1990 periodmonthlynorm6190avgtmin.zip Minimum temperature monthly normals, 1961-1990 periodmonthlynorm6190avgtmax.zip Maximum temperature monthly normals, 1961-1990 periodmonthlynorm6190avgtavg.zip Average temperature monthly normals, 1961-1990 period<br>yearnorm6190precip.zip Precipitation yearly normal 1961-1990 periodyearnorm6190avgtmin.zip Minimum temperature yearly normal 1961-1990 periodyearnorm6190avgtmax.zip Maximum temperature yearly normal 1961-1990 periodyearnorm6190avgtavg.zip Average temperature yearly normal 1961-1990 period<br><br>
DOI: 10.6084/m9.figshare.5239615.v6
title: CCAFS-CMIP5 Delta Method Downscaling database

description: We apply a downscaling method, called Delta Method, based on thin plate spline spatial interpolation of anomalies (deltas) of original GCM outputs. Anomalies are interpolated between GCM cell centroids and are then applied to a baseline climate given by a high resolution surface (i.e. WorldClim 1.4 , http://www.worldclim.org/). The process consists in the following steps: 1) Calculation of 30-year averages for present day simulations and 4 future periods; (2) calculation of anomalies as the absolute difference between future and present day values in temperatures (minimum and maximum) and proportional differences in total precipitation; (3) interpolation of these anomalies using centroids of GCM cells as points for interpolation; and (4) addition of the interpolated surfaces to the current climates from WorldClim<br>WorldClim and full GCM timeseries are freely available in the internet, whilst all other calculations are carried out by means of Geographic Information Systems (GIS) software. Used formats are NetCDF (for GCM outputs), ESRI-GRID (for WorldClim and final downscaled data), and ESRI-ASCII grids for providing standard and easy-of-use outputs to potential users of the data.<br>CCAFS and its partners have processed this data to provide seamless continuous future climate surfaces. This work is licensed under a Creative Commons Atribution 4.0 International (CC BY 4.0). Users should acknowledge CCAFS as the source used in the creation of any reports, publications, new data sets, derived products, or services resulting from the use of this data set.
DOI: 10.17632/fbtvwfyys9
title: IS THE EFFECT OF HOMOEOPATHIC MEDICINE DIFFERENT FROM THE EFFECT OF PLACEBO IN HEALTHY INDIVIDUALS? – A RANDOMIZED, BLINDED, CONTROLLED, THREE ARMED HOMOEOPATHIC PATHOGENETIC TRIAL ON ELECTRO-PHOTONIC IMAGE CHANGES.

description: “A RANDOMISED, BLINDED, PLACEBO-CONTROLLED, THREE ARMED PARALLEL STUDY ON ELECTROPHOTONIC IMAGE CHANGES DURING HOMOEOPATHIC PATHOGENETIC TRIAL USING MOLECULAR AND ULTRA-MOLECULAR DOSES - A REPROVING OF BELLADONNA”
ABSTRACT:
Background:
Homoeopathic drug proving is the process of understanding the pathogenetic powers of the dynamised Homoeopathic drugs on healthy human beings. In homoeopathic drug proving due to the biomimicry of production of disease symptoms, there are tremendous chances for the altered electron communication which may produce changes in the Electro-photonic Emission. Although controversies exist on the action of Belladonna in the healthy human provers (Good year et al (1998), H. Wallah et al (2001), S Brien et al(2003)). This study takes up the challenge to re-evaluate the efficacy of Belladonna in homoeopathic pathogenetic trial in the molecular and ultra-molecular doses.
Method:
Randomised, blinded, placebo-controlled three-armed (Belladonna6C, Belladonna200C and Placebo) parallel study (n = 150) conducted in National Institute of Homoeopathy, India. The study design was framed as a four-week protocol consisting of Pre-Intervention period, Intervention Period, Post Intervention period for each participant. Primary and Secondary Outcome Measures are Twelve parameters of Electro Photonic Imaging [EPI] technique and Q-Form-02 (30 items, Likert scale questionnaire) respectively.
Result:
The analysis showed a statistically significant difference in eight parameters (P-value <0.05,) out of twelve parameters and the Form Coefficient parameter (P-value <0.001) revealed the effect of placebo during the run-in phase. The questionnaire Q-Form-02 analysis revealed a significant difference among the three groups. The post hoc analysis showed the number of symptoms and the scores among groups depicted the trend: Belladonna 6C > Belladonna 200C > Placebo.
Conclusion:
We may conclude that the Electro Photonic Emissions from the human body may serve as a parameter to differentiate the placebo effect from the Homoeopathic medicine effect in the Homoeopathic Pathogenetic Trial [Trial Registration: CTRI/ 2018/03/012290].
DOI: 10.6084/m9.figshare.13055615.v6
title: Urbanization and its impact on flood risk: The case of Addis Ababa, Ethiopia

description: Addis Ababa city rainfall raw data (1976-2016) acquired from Ethiopian meteorological agency<br>
DOI: 10.6084/m9.figshare.14569824.v1
title: data

description: plant, bacterial and fungal diversity