cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12021864.v1
title: Additional file 6 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 6. The correspondence among methane yield, expression of mrcA gene, overall archaeal relative abundance and activity.
DOI: 10.6084/m9.figshare.12021852
title: Additional file 4 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 4. The average coverage and relative abundance of each MAG in 9 samples.
DOI: 10.6084/m9.figshare.12021858.v1
title: Additional file 5 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 5. The average RPKM and relative activity of each MAG in 9 samples.
DOI: 10.6084/m9.figshare.12021846
title: Additional file 3 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 3. Average nucleotide identity between MAGs in this study and genomes in NCBI database (hit with 85% similarity).
DOI: 10.6084/m9.figshare.12021852.v1
title: Additional file 4 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 4. The average coverage and relative abundance of each MAG in 9 samples.
DOI: 10.6084/m9.figshare.12021846.v1
title: Additional file 3 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 3. Average nucleotide identity between MAGs in this study and genomes in NCBI database (hit with 85% similarity).
DOI: 10.6084/m9.figshare.12021834
title: Additional file 14 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 14. Average expression level of each KEEG module.
DOI: 10.6084/m9.figshare.12021837
title: Additional file 1 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 1. The genome quality of all MAGs.
DOI: 10.6084/m9.figshare.12021831
title: Additional file 13 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 13. Gene expression profile of Coprothermobacter proteolyticus DTU632.
DOI: 10.6084/m9.figshare.12021834.v1
title: Additional file 14 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 14. Average expression level of each KEEG module.
DOI: 10.6084/m9.figshare.12021837.v1
title: Additional file 1 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 1. The genome quality of all MAGs.
DOI: 10.6084/m9.figshare.12021828
title: Additional file 12 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 12. Gene expression profile of unclassified Synergistaceae sp.DTU638.
DOI: 10.6084/m9.figshare.12021828.v1
title: Additional file 12 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 12. Gene expression profile of unclassified Synergistaceae sp.DTU638.
DOI: 10.6084/m9.figshare.12021831.v1
title: Additional file 13 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 13. Gene expression profile of Coprothermobacter proteolyticus DTU632.
DOI: 10.6084/m9.figshare.12021822
title: Additional file 11 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 11. Gene expression profile of unclassified Bacteria sp.DTU645.
DOI: 10.6084/m9.figshare.12021816
title: Additional file 10 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 10. The expression level of glycine cleavage system H protein, acetyl-CoA decarbonylase/synthase complex and glycine reductase genes.
DOI: 10.6084/m9.figshare.12021822.v1
title: Additional file 11 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 11. Gene expression profile of unclassified Bacteria sp.DTU645.
DOI: 10.6084/m9.figshare.12021816.v1
title: Additional file 10 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

description: Additional file 10. The expression level of glycine cleavage system H protein, acetyl-CoA decarbonylase/synthase complex and glycine reductase genes.
DOI: 10.6084/m9.figshare.12021348
title: ELMv1 outputs for global scale evaluation

description: This file includes model outputs from global ELM v1 offline simulations that are used in the global v1 offline manuscript.
DOI: 10.6084/m9.figshare.12021336
title: COVID-19 and NOS3.json

description: Textual citations with facts related to NOS3, ACE2 and NO production.
DOI: 10.6084/m9.figshare.12021336.v1
title: covid-19_nos3.json

description: Textual citations with facts related to NOS3, ACE2 and NO production.
DOI: 10.6084/m9.figshare.12021303
title: supplement data

description: suplement
DOI: 10.6084/m9.figshare.12021303.v1
title: supplement data

description: suplement
DOI: 10.6084/m9.figshare.12021297
title: Great Western Woodlands bird SDM data

description: Data for: Andrew & Fox. Modelling species distributions in dynamic landscapes: The importance of the temporal dimension. Journal of Biogeography, doi:10.1111/jbi.13832<br>Input occurrence data and paired environmental variables for temporal and static maxent models provided in 'samples with data' format. Please see Online Data S1 in the Supporting Information published with the paper for full descriptions of the variables.<br>
DOI: 10.6084/m9.figshare.12021297.v1
title: Great Western Woodlands bird SDM data

description: Data for: Andrew & Fox. Modelling species distributions in dynamic landscapes: The importance of the temporal dimension. Journal of Biogeography, doi:10.1111/jbi.13832<br>Input occurrence data and paired environmental variables for temporal and static maxent models provided in 'samples with data' format. Please see Online Data S1 in the Supporting Information published with the paper for full descriptions of the variables.<br>
DOI: 10.6084/m9.figshare.12021288
title: Echocardiographic parameters

description: <b>Supplementary table 1. The echocardiographic parameters of the 4 group at 0 hour and 6 hours post-intravenous continuous infusion of epinephrine and/or norepinephrine.</b>
DOI: 10.6084/m9.figshare.12021252
title: proj_Climate_AR-Hunters_RAW

description: Raw survey data from study on climate change beliefs among waterfowl hunters in Arkansas.
DOI: 10.6084/m9.figshare.12021288.v1
title: Echocardiographic parameters

description: <b>Supplementary table 1. The echocardiographic parameters of the 4 group at 0 hour and 6 hours post-intravenous continuous infusion of epinephrine and/or norepinephrine.</b>
DOI: 10.6084/m9.figshare.12021252.v1
title: proj_Climate_AR-Hunters_RAW

description: Raw survey data from study on climate change beliefs among waterfowl hunters in Arkansas.
DOI: 10.6084/m9.figshare.12021078
title: Ca data repository .xlsx

description: Data on Calcium Dynamics based on calcium indicators Salsa6F and Fluo4 in astrocytes in response to photolysis
DOI: 10.6084/m9.figshare.12021075
title: Data: CD mini-rhizotrons

description: This dataset contains the shoot height and root length for plants grown in the following conditions:<br>1. Lab (growth chamber): Plants were grown in CD mini-rhizotrons, Cone-tainer pots, and seed germination pouches<br>2. Field (common garden at the Pymantuning Laboratory of Ecology): Plants were grown in CD mini-rhizotrons and Cone-tainer pots
DOI: 10.6084/m9.figshare.12021057
title: Combining Native and ‘omics’ mass spectrometry to identify endogenous ligands bound to membrane proteins - RAW DATA

description: Raw mass spectrometry data. Figures and Extended Data for<br>Combining Native and ‘omics’ mass spectrometry to identify endogenous ligands bound to membrane proteins<br>Main Figures 1,2,3Extended Data 3,4,5<br>Data for supplementary figures available on request from corresponding authors
DOI: 10.6084/m9.figshare.12021156
title: rdf2pg experimental datasets

description: RDF Datasets used in the rdf2pg paper, and the corresponding YARS-PG files.
DOI: 10.6084/m9.figshare.12021156.v5
title: rdf2pg experimental datasets

description: RDF Datasets used in the rdf2pg paper, and the corresponding YARS-PG files.
DOI: 10.6084/m9.figshare.12020796
title: 3D data snapshots of test Homemaker projects

description: Homemaker is work in progress, these files represent a snapshot of three projects that have been used during recent development. The results are interesting in their own right, so they are presented here (note that the 3d geometry generation is incomplete, but is representative of the typical quality at date uploaded - March 2020)<br><br>Nineteen plots - nineteen large houses on a 0.5 hectare sloping site, default style<br>Sixteenth - eight small houses on a 0.0625 hectare site<br><br>Courtyard - eleven small courtyard houses on a 0.16 hectare site<br>File formats are:<br>IFC (Industry Foundation Classes), BIM building Modelling format, this output is less complete and is missing stairs etc..<br>DAE (Collada), a 3d model interchange format.<br>ZIP, this contains the high level YAML data that is used in the evolution process. You need this if you want to recreate any of the 3D model formats above. Also included are network graphs showing the internal circulation of each building.<br>
DOI: 10.6084/m9.figshare.12021156.v6
title: rdf2pg experimental datasets

description: RDF Datasets used in the rdf2pg paper, and the corresponding YARS-PG files.
DOI: 10.6084/m9.figshare.12021156.v7
title: rdf2pg experimental datasets

description: RDF Datasets used in the rdf2pg paper, and the corresponding YARS-PG files.
DOI: 10.11583/dtu.12019074
title: Models and algorithms for optimising two-dimensional LEGO constructions

description: This dataset is a part of the data used in the article "Models and algorithms for optimising two-dimensional LEGO constructions".<br>The instances "Bear.txt", "Car.txt" and "Saturn.txt" are inspired by images from www.free3d.com.<br><br>Please read the ReadMe.txt file for information on how to interprete the data structure.
DOI: 10.11583/dtu.12019074.v1
title: Models and algorithms for optimising two-dimensional LEGO constructions

description: This dataset is a part of the data used in the article "Models and algorithms for optimising two-dimensional LEGO constructions".<br>The instances "Bear.txt", "Car.txt" and "Saturn.txt" are inspired by images from www.free3d.com.<br><br>Please read the ReadMe.txt file for information on how to interprete the data structure.
DOI: 10.6084/m9.figshare.12021156.v8
title: rdf2pg experimental datasets

description: RDF Datasets used in the rdf2pg paper, and the corresponding YARS-PG files.
DOI: 10.6084/m9.figshare.12021156.v9
title: rdf2pg experimental datasets

description: RDF Datasets used in the rdf2pg paper, and the corresponding YARS-PG files.
DOI: 10.6084/m9.figshare.12021156.v11
title: rdf2pg experimental datasets

description: RDF Datasets used in the rdf2pg paper, and the corresponding YARS-PG files.
DOI: 10.6084/m9.figshare.12019017
title: The microbiota of the Lasius fuliginosus and Pella laticollis in the host–myrmecophile interactions

description: Table S1. Detailed taxonomic analyses at different ranks with the data obtained for the samples tested.Figure S1. Detailed taxonomic analyses at different ranks. Sunburst charts show the relative abundance of microbial 16S rDNA sequences at different taxonomic levels. The first level represents the kingdom; the second level represents all phyla present in a particular sample; subsequent next levels represent the class, order, family and genus.<br>
DOI: 10.6084/m9.figshare.12018834
title: ephrinB2-HA in Xenopus embryos(stage 13).rtf

description: Co-IP and mass spectrometric analysis using ephrinB2-HA overexpressed Xenopus embryos (Stage13)
DOI: 10.6084/m9.figshare.12018834.v1
title: ephrinB2-HA in Xenopus embryos(stage 13).rtf

description: Co-IP and mass spectrometric analysis using ephrinB2-HA overexpressed Xenopus embryos (Stage13)
DOI: 10.6084/m9.figshare.12018804
title: Spirit Laguna hollow measurements of clasts physical properties

description: Measurements of clasts from Spirit Laguna hollow for Figures in Weitz et al. (2020)
DOI: 10.6084/m9.figshare.12018804.v1
title: Spirit Laguna hollow measurements of clasts physical properties

description: Measurements of clasts from Spirit Laguna hollow for Figures in Weitz et al. (2020)
DOI: 10.6084/m9.figshare.12018834.v3
title: ephrinB2-HA in Xenopus embryos(stage 13).rtf

description: Co-IP and mass spectrometric analysis using ephrinB2-HA overexpressed Xenopus embryos (Stage13)
DOI: 10.6084/m9.figshare.12018834.v2
title: ephrinB2-HA in Xenopus embryos(stage 13).rtf

description: Co-IP and mass spectrometric analysis using ephrinB2-HA overexpressed Xenopus embryos (Stage13)
DOI: 10.6084/m9.figshare.12018531
title: Synthesis, spectral and structural characterization and biological activity of Cu(II) complexes with 4-(diethylamino)salicylaldehyde and <i>α</i>-diimines

description: In this article, synthesis, spectral and X-ray structure characterization, antimicrobial activity and Brine shrimp test of two new Cu(II) complexes with a salicylaldehyde derivative have been reported. Complexes [Cu(<b>L</b>)(bipy)]BF<sub>4</sub>·0.5H<sub>2</sub>O and [Cu<sub>2</sub>(<b>L</b>)<sub>2</sub>(phen)<sub>2</sub>](BF<sub>4</sub>)<sub>2</sub> were obtained in the reaction of Cu(BF<sub>4</sub>)<sub>2</sub>·6H<sub>2</sub>O, deprotonated 4-(diethylamino)−2-hydroxybenzaldehyde ligand (<b>L</b>) and <i>α</i>-diimine (2,2’-bipyridine or 1,10-phenanthroline). The complex with bipyridine is mononuclear, containing one <b>L</b> and one bipyridine ligand in a distorted square-planar cation with a BF<sub>4</sub><sup>−</sup> anion and lattice water molecule, whereas the complex with phenanthroline is a dinuclear centrosymmetric dimeric cation, containing two <b>L</b> ligands along with two phenanthroline ligands and BF<sub>4</sub><sup>−</sup> anions. The coordination geometry of each Cu(II) ion can be described as an elongated square pyramid. MS-ESI spectroscopy indicated that [Cu<sub>2</sub>(<b>L</b>)<sub>2</sub>(phen)<sub>2</sub>](BF<sub>4</sub>)<sub>2</sub> is mononuclear in DMSO solution. In vitro antibacterial and antifungal activity was tested against four Gram-positive, four Gram-negative bacteria and three fungal strains. Complexes showed significantly stronger antibacterial activities than parent ligands. The mononuclear phenanthroline complex in solution showed very good antimicrobial activity, which is comparable to the activity of the standard antibiotic amikacin against all tested bacterial strains. The same complex has better antifungal activity than fluconazole, which was used as a standard. Results of the brine shrimp test indicate that both complexes have good toxicity against <i>Artemia</i> nauplii.
DOI: 10.6084/m9.figshare.12018663
title: Raw data related to ex-vivo electrophysiology

description: Raw data related to ex-vivo electrophysiology. Recorded with Multi Channel Systems MC Rack.
DOI: 10.6084/m9.figshare.12018531.v1
title: Synthesis, spectral and structural characterization and biological activity of Cu(II) complexes with 4-(diethylamino)salicylaldehyde and <i>α</i>-diimines

description: In this article, synthesis, spectral and X-ray structure characterization, antimicrobial activity and Brine shrimp test of two new Cu(II) complexes with a salicylaldehyde derivative have been reported. Complexes [Cu(<b>L</b>)(bipy)]BF<sub>4</sub>·0.5H<sub>2</sub>O and [Cu<sub>2</sub>(<b>L</b>)<sub>2</sub>(phen)<sub>2</sub>](BF<sub>4</sub>)<sub>2</sub> were obtained in the reaction of Cu(BF<sub>4</sub>)<sub>2</sub>·6H<sub>2</sub>O, deprotonated 4-(diethylamino)−2-hydroxybenzaldehyde ligand (<b>L</b>) and <i>α</i>-diimine (2,2’-bipyridine or 1,10-phenanthroline). The complex with bipyridine is mononuclear, containing one <b>L</b> and one bipyridine ligand in a distorted square-planar cation with a BF<sub>4</sub><sup>−</sup> anion and lattice water molecule, whereas the complex with phenanthroline is a dinuclear centrosymmetric dimeric cation, containing two <b>L</b> ligands along with two phenanthroline ligands and BF<sub>4</sub><sup>−</sup> anions. The coordination geometry of each Cu(II) ion can be described as an elongated square pyramid. MS-ESI spectroscopy indicated that [Cu<sub>2</sub>(<b>L</b>)<sub>2</sub>(phen)<sub>2</sub>](BF<sub>4</sub>)<sub>2</sub> is mononuclear in DMSO solution. In vitro antibacterial and antifungal activity was tested against four Gram-positive, four Gram-negative bacteria and three fungal strains. Complexes showed significantly stronger antibacterial activities than parent ligands. The mononuclear phenanthroline complex in solution showed very good antimicrobial activity, which is comparable to the activity of the standard antibiotic amikacin against all tested bacterial strains. The same complex has better antifungal activity than fluconazole, which was used as a standard. Results of the brine shrimp test indicate that both complexes have good toxicity against <i>Artemia</i> nauplii.
DOI: 10.25377/sussex.12018471
title: Data for research article 'Dynamic multimodal interactions in navigating wood ants: What do path details tell us about cue integration?'

description: <b>Data for paper published in the Journal of Experimental Biology</b><br>Data contains paths from individually recorded ants during the experiments (saved as Matlab files). For details please see the README.doc file and view the experiment methods in the published paper.<br>You will need access to the MATLAB environment to view these files.<br><b>Abstract:</b>Ants are expert navigators using multimodal information to navigate successfully. Here, we present the results of systematic studies of multimodal cue use in navigating wood ants, <i>Formica rufa</i>. Ants learnt to navigate to a feeder that was defined by an olfactory cue (O), visual cue (V) and airflow (A) presented together. When the feeder, olfactory cue and airflow were all placed at the centre of the visual cue (VOA<sub>Centre</sub>), ants did not directly approach the learnt feeder when either the olfactory or visual cue was removed. This confirms that some form of cue binding has taken place. However, in a visually simpler task with the feeder located at the edge of the visual cue (VOA<sub>Edge</sub>), ants still approached the feeder directly when individual cue components were removed. Hence, cue binding is flexible and depends on the navigational context. In general, cues act additively in determining the ants’ paths accuracy, i.e. the use of multiple cues increased navigation performance. Moreover, across different training conditions, we saw different motor patterns in response to different sensory cues. For instance, ants had more sinuous paths with more turns when they followed an odour plume but did not have any visual cues. Having visual information together with the odour enhanced performance and therefore positively impacted on plume following. Interestingly, path characteristics of ants from the different multimodal groups (VOA<sub>Centre</sub> vs. VOA<sub>Edge</sub>) were different, suggesting that the observed flexibility in cue binding may be a result of ants’ movement characteristics.
DOI: 10.25377/sussex.12018471.v1
title: Data for research article 'Dynamic multimodal interactions in navigating wood ants: What do path details tell us about cue integration?'

description: <b>Data for paper published in the Journal of Experimental Biology</b><br>Data contains paths from individually recorded ants during the experiments (saved as Matlab files). For details please see the README.doc file and view the experiment methods in the published paper.<br>You will need access to the MATLAB environment to view these files.<br><b>Abstract:</b>Ants are expert navigators using multimodal information to navigate successfully. Here, we present the results of systematic studies of multimodal cue use in navigating wood ants, <i>Formica rufa</i>. Ants learnt to navigate to a feeder that was defined by an olfactory cue (O), visual cue (V) and airflow (A) presented together. When the feeder, olfactory cue and airflow were all placed at the centre of the visual cue (VOA<sub>Centre</sub>), ants did not directly approach the learnt feeder when either the olfactory or visual cue was removed. This confirms that some form of cue binding has taken place. However, in a visually simpler task with the feeder located at the edge of the visual cue (VOA<sub>Edge</sub>), ants still approached the feeder directly when individual cue components were removed. Hence, cue binding is flexible and depends on the navigational context. In general, cues act additively in determining the ants’ paths accuracy, i.e. the use of multiple cues increased navigation performance. Moreover, across different training conditions, we saw different motor patterns in response to different sensory cues. For instance, ants had more sinuous paths with more turns when they followed an odour plume but did not have any visual cues. Having visual information together with the odour enhanced performance and therefore positively impacted on plume following. Interestingly, path characteristics of ants from the different multimodal groups (VOA<sub>Centre</sub> vs. VOA<sub>Edge</sub>) were different, suggesting that the observed flexibility in cue binding may be a result of ants’ movement characteristics.
DOI: 10.6084/m9.figshare.12018450
title: Metadata and data associated with the published article: Systemic Short Chain Fatty Acids limit antitumor effect of CTLA-4 blockade in hosts with cancer

description: This dataset consists of 10 <b>.xlsx</b> spreadsheets containing all source data from the related manuscript. <br>The spreadsheets are as follows.<br>- <b>NCOMMS-19-10571A_Raw NGS data.xlsx</b> <br>This spreadsheet contains summary statistics for all raw Next Generation Sequencing data described in the manuscript. There are 38 tabs of data.- Data underlying figures 1 to 6 in the related manuscript are included in files with the naming format '<b>ncomms-source-data Fig X.xlsx</b>'. Each such file contains separate tabs for each sub-figure. Data underlying Figures 1 and 2 are presented in the same spreadsheet.- Data underlying supplementary figures 1 to 18 of the related manuscript are included in files with the naming format '<b>ncomms-source-data Supp Fig A_B.xlsx</b>', where A is the first supplementary figure in the spreadsheet, and B is the last. Each such file contains separate tabs for each supplementary figure.<br>The related publication evaluated whether short chain fatty acid (SCFA) levels could be related to the clinical outcome in mice and in patients treated with anti-CTLA-4 blocking mAbs.<br>