cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8210998
title: Accompanying Dataset migr_asyappctzm for Efficient Analytical Queries on Semantic Web Data Cubes

description: This dataset shows how the Eurostat data cube in the orginal publicatin is modelled in QB4OLAP. This data is based on statistical data about asylum applications to the European Union, provided by Eurostat on http://ec.europa.eu/eurostat/web/products-datasets/-/migr_asyappctzm Further data has been integrated from: https://github.com/lorenae/qb4olap/tree/master/examples
DOI: 10.5281/zenodo.8211126
title: Accompanying Dataset migr_asyappctzm for Efficient Analytical Queries on Semantic Web Data Cubes

description: This dataset shows how the Eurostat data cube in the orginal publicatin is modelled in QB4OLAP. This data is based on statistical data about asylum applications to the European Union, provided by Eurostat on http://ec.europa.eu/eurostat/web/products-datasets/-/migr_asyappctzm Further data has been integrated from: https://github.com/lorenae/qb4olap/tree/master/examples
DOI: 10.6084/m9.figshare.23828691
title: SurvivalAnalysis.xlsx

description: This data include all individuals recorded during our field study 2019. the species tag UB means, the individuals could not be identified to a species or taxa.
DOI: 10.6084/m9.figshare.23828691.v1
title: SurvivalAnalysis.xlsx

description: This data include all individuals recorded during our field study 2019. the species tag UB means, the individuals could not be identified to a species or taxa.
DOI: 10.5281/zenodo.8211131
title: Differential gene expression data from an experiment manipulating larval nutrition in female fruit flies (Drosophila melanogaster)

description: This file contains data on differentially expressed genes, redundant GO terms, and overlapping genes from gene expression comparisons in Tables D1 - D8 as described in, "David H. Collins, David C. Prince, Jenny L. Donelan, Tracey Chapman, and Andrew F. G. Bourke. Developmental diet alters the fecundity-longevity relationship and age-related gene expression in <em>Drosophila melanogaste</em>r. The Journals of Gerontology: Series A. 2023."
DOI: 10.5281/zenodo.8211130
title: Differential gene expression data from an experiment manipulating larval nutrition in female fruit flies (Drosophila melanogaster)

description: This file contains data on differentially expressed genes, redundant GO terms, and overlapping genes from gene expression comparisons in Tables D1 - D8 as described in, "David H. Collins, David C. Prince, Jenny L. Donelan, Tracey Chapman, and Andrew F. G. Bourke. Developmental diet alters the fecundity-longevity relationship and age-related gene expression in <em>Drosophila melanogaste</em>r. The Journals of Gerontology: Series A. 2023."
DOI: 10.6084/m9.figshare.23828640
title: germination_data.xlsx

description: this is the pooled seedling no data set for the proportion of survival statistics.
DOI: 10.6084/m9.figshare.23828640.v1
title: germination_data.xlsx

description: this is the pooled seedling no data set for the proportion of survival statistics.
DOI: 10.34740/kaggle/dsv/6241685
title: Egypt Gold Prices | Daily Updated
DOI: 10.6084/m9.figshare.23828628
title: Seedling_no.xlsx

description: These data are the seedling numbers at a specific date during the entire study period of the experiment in 2019.
DOI: 10.6084/m9.figshare.23828628.v1
title: Seedling_no.xlsx

description: These data are the seedling numbers at a specific date during the entire study period of the experiment in 2019.
DOI: 10.6084/m9.figshare.22598050
title: Sub-grid representation of vegetation cover in land surface schemes improves the modeling of how climate responds to deforestation

description: <em>Code used in data analysis/figure creation for the manuscript titled as"</em> Sub-grid representation of vegetation cover in land surface schemes improves the modeling of how climate responds to deforestation <em>" </em>
DOI: 10.6084/m9.figshare.22598050.v2
title: Sub-grid representation of vegetation cover in land surface schemes improves the modeling of how climate responds to deforestation

description: <em>Code used in data analysis/figure creation for the manuscript titled as"</em> Sub-grid representation of vegetation cover in land surface schemes improves the modeling of how climate responds to deforestation <em>" </em>
DOI: 10.6084/m9.figshare.23828787
title: Synteny and rearrangement alignments - Hi-C

description: SyRI output files for all pairs of genome alignments for E. melliodora Hi-C analysis. Each file contains the syntenc and rearranged sequences between each pair of genomes.<br>
DOI: 10.4121/a6d5a40e-0358-47cf-9ec1-335df0e4a3c3.v1
title: Data underlying the publication: An integrated end-to-end deep neural network for automated detection of discarded fish species and their weight estimation.

description: The dataset contains images of the discarded fish on the conveyor belt and annotations. Annotations are prepared in YOLO format, i.e. separate text files, containing fish species label, object bounding box annotation, weight and occlusion level. Annotation per individual fish is written in a separate row of the file.Additionally, we provide weight file (.pt) for the best performing Detection-Weight2 model.
DOI: 10.5517/ccdc.csd.cc2fn5dp
title: CCDC 2253712: Experimental Crystal Structure Determination

description: Related Article: Charles E. Greif, R. Tyler Mertens, Gilles Berger, Sean Parkin, Samuel G. Awuah|2023|RSC Chem. Biol.|4|592|doi:10.1039/D3CB00051F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fn5fq
title: CCDC 2253713: Experimental Crystal Structure Determination

description: Related Article: Charles E. Greif, R. Tyler Mertens, Gilles Berger, Sean Parkin, Samuel G. Awuah|2023|RSC Chem. Biol.|4|592|doi:10.1039/D3CB00051F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fn5gr
title: CCDC 2253714: Experimental Crystal Structure Determination

description: Related Article: Charles E. Greif, R. Tyler Mertens, Gilles Berger, Sean Parkin, Samuel G. Awuah|2023|RSC Chem. Biol.|4|592|doi:10.1039/D3CB00051F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fn5hs
title: CCDC 2253715: Experimental Crystal Structure Determination

description: Related Article: Charles E. Greif, R. Tyler Mertens, Gilles Berger, Sean Parkin, Samuel G. Awuah|2023|RSC Chem. Biol.|4|592|doi:10.1039/D3CB00051F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fn5jt
title: CCDC 2253716: Experimental Crystal Structure Determination

description: Related Article: Charles E. Greif, R. Tyler Mertens, Gilles Berger, Sean Parkin, Samuel G. Awuah|2023|RSC Chem. Biol.|4|592|doi:10.1039/D3CB00051F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.5992384
title: BMSB olive damage

description: Number of olives subjected to early drop after brown marmorated stink bug feeding activity
description: https://doi.org/10.1111/jen.13018
DOI: 10.5281/zenodo.5992383
title: BMSB olive damage

description: Number of olives subjected to early drop after brown marmorated stink bug feeding activity
description: https://doi.org/10.1111/jen.13018
DOI: 10.5281/zenodo.8211219
title: Standardized comparison of different versions of the DUFSS questionnaire using the EMPRO tool.

description: Dataset corresponding to the evaluations of the different versions of the DUFSS questionnaire using the EMPRO tool.
DOI: 10.5281/zenodo.8211218
title: Standardized comparison of different versions of the DUFSS questionnaire using the EMPRO tool.

description: Dataset corresponding to the evaluations of the different versions of the DUFSS questionnaire using the EMPRO tool.
DOI: 10.5519/qd.u4ij53wn
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (102 records)
DOI: 10.6084/m9.figshare.23828814
title: <b>Results of OrthoMCL and CAFE</b>

description: Contained here are the raw results derived from the analysis of comparative genomics, encompassing both <b>CAFE</b> and <b>OrthoMCL</b>.The content of the file is as indicated by the filename. The values 0.01 and 0.05 in the filename represent significant <i>p</i>-values less than 0.01 and 0.05, respectively.
DOI: 10.6084/m9.figshare.23828814.v1
title: <b>Results of OrthoMCL and CAFE</b>

description: Contained here are the raw results derived from the analysis of comparative genomics, encompassing both <b>CAFE</b> and <b>OrthoMCL</b>.The content of the file is as indicated by the filename. The values 0.01 and 0.05 in the filename represent significant <i>p</i>-values less than 0.01 and 0.05, respectively.
DOI: 10.21227/b3p6-dx58
title: MOOC review data

description: With the development of education informatization and digitalization, Massive Open Online Courses (MOOCs) have been widely adopted in the teaching of higher vocational education due to their advantages such as flexibility of time and place, breaking the area boundary, and realizing the goal of sharing resources. Our data is crawled from 39 courses of higher vocational education on the website of China University MOOC (www.icourse163.org). Our data consists of 40906 reviews that are published between February 3, 2018 and May 2, 2021. From the data, we can see that students are generally satisfied with these courses and the reviews on the courses are dominated by short texts.
DOI: 10.6084/m9.figshare.23641602
title: Supplementary Material for: Real world outcomes of FLOT vs CROSS regimens for patients with oesophagogastric cancers

description: Introduction: Treatment of oesophageal (OC), gastro-oesophageal junction (GOJ) and gastric cancer (GC) includes either neoadjuvant CROSS for OC or GOJ or perioperative FLOT for OC, GOJ and GC adenocarcinoma. This study aims to describe the real-world outcomes of patients with GC, GOJ and OC treated with FLOT or CROSS and identify variables associated with efficacy through exploratory analysis. We also aimed to evaluate the comparison of FLOT and CROSS for the treatment of OC and GOJ adenocarcinomas. Methods: This is a retrospective observational study of patients with locally advanced OC, GOJ or GC treated with FLOT or CROSS between January 2015 to June 2021 in 5 cancer centers across Sydney, Australia. Long-rank test was used to compare survival estimated between subgroups. Hazard ratios for univariate and multivariate analysis were estimated with cox-proportional regression. Results: The study included 168 patients. The 24 month relapse free survival (RFS) and overall survival (OS) for FLOT was 59% and 69% respectively. The median RFS was 29.6 months and median OS was not reached. For CROSS, The 24 month RFS and OS was 55% and 63% with a median RFS and OS of 28.5 and 40.2 months, respectively. There was no difference in OS and RFS between the treatments. FLOT was less tolerable than CROSS with more dose reductions, treatment discontinuation and clinically relevant grade 3 and 4 toxicity. Neutrophil lymphocyte ratio (NLR)) was associated with survival for both treatments. Conclusion: Similar efficacy outcomes were seen in this real world population compared to the clinical trials for FLOT and CROSS.
DOI: 10.6084/m9.figshare.23641602.v1
title: Supplementary Material for: Real world outcomes of FLOT vs CROSS regimens for patients with oesophagogastric cancers

description: Introduction: Treatment of oesophageal (OC), gastro-oesophageal junction (GOJ) and gastric cancer (GC) includes either neoadjuvant CROSS for OC or GOJ or perioperative FLOT for OC, GOJ and GC adenocarcinoma. This study aims to describe the real-world outcomes of patients with GC, GOJ and OC treated with FLOT or CROSS and identify variables associated with efficacy through exploratory analysis. We also aimed to evaluate the comparison of FLOT and CROSS for the treatment of OC and GOJ adenocarcinomas. Methods: This is a retrospective observational study of patients with locally advanced OC, GOJ or GC treated with FLOT or CROSS between January 2015 to June 2021 in 5 cancer centers across Sydney, Australia. Long-rank test was used to compare survival estimated between subgroups. Hazard ratios for univariate and multivariate analysis were estimated with cox-proportional regression. Results: The study included 168 patients. The 24 month relapse free survival (RFS) and overall survival (OS) for FLOT was 59% and 69% respectively. The median RFS was 29.6 months and median OS was not reached. For CROSS, The 24 month RFS and OS was 55% and 63% with a median RFS and OS of 28.5 and 40.2 months, respectively. There was no difference in OS and RFS between the treatments. FLOT was less tolerable than CROSS with more dose reductions, treatment discontinuation and clinically relevant grade 3 and 4 toxicity. Neutrophil lymphocyte ratio (NLR)) was associated with survival for both treatments. Conclusion: Similar efficacy outcomes were seen in this real world population compared to the clinical trials for FLOT and CROSS.
DOI: 10.25345/c5cn6z90c
title: MassIVE MSV000092581 - Comparative analysis of differential cellular genome and proteome regulation by HIV-1 and HIV-2 pseudovirions in the early phase of infection
title: Beside the similar structure and genomic organization of human immunodeficiency viruses type 1 and 2 (HIV-1 and HIV-2), striking difference exist between the in terms of replication dynamics and clinical manifestation of infection. Although pathomechanism of HIV-1 infection well characterized, relatively few data are available regarding HIV-2 viral replication, and its interaction with host cell protein during the early phase of infection. We utilized proteo-transcriptomic analyses to determine differential genome expression and proteomic changes induced by transduction with HIV-1 / 2 pseudovirions during eight, 12, and 26 hour time-points in HEK-293T cells. We show that alteration in the cellular milieu was indeed different between the two pseudovirions. The significantly higher number of genes altered by HIV-2 in the first two time-points, suggest a more diverse, yet subtle effect on the host cell, preparing the infected cell for integration and latency. On the other hand, GO analysis showed that, while HIV-1 induced cellular oxidative stress and had a greater effect on the cellular metabolism, HIV-2 mostly affected genes involved in cell adhesion, extracellular matrix organization or keratinocyte differentiation. Proteomics analysis revealed that HIV-1 upregulated, while HIV-2 downregulated proteins involved viral protein expression and replication. Our study provides an insight into the understudied replication cycle of HIV-2, and enrich our knowledge about the use of HIV-based lentiviral vectors in general.
DOI: 10.5281/zenodo.8211303
title: Raw data and data accompanying publication: https://doi.org/10.1016/j.jmb.2022.167632

description: Raw data and data accompanying publication: Szabat M., Prochota M., Kierzek R., Kierzek E., Mathews D.H., A Test and Refinement of Folding Free Energy Nearest Neighbor Parameters for RNA Including N6-Methyladenosine. J Mol Biol. (2022) 434:167632. https://doi.org/10.1016/j.jmb.2022.167632
description: This work was supported by National Science Center grants UMO-2020/01/0/NZ6/00137 and 2020/39/B/NZ1/03054 to E.K. and UMO-2019/33/B/ST4/01422 to R.K., and by National Institutes of Health Grant R01GM076485 to D.H.M.
DOI: 10.5281/zenodo.8211302
title: Raw data and data accompanying publication: https://doi.org/10.1016/j.jmb.2022.167632

description: Raw data and data accompanying publication: Szabat M., Prochota M., Kierzek R., Kierzek E., Mathews D.H., A Test and Refinement of Folding Free Energy Nearest Neighbor Parameters for RNA Including N6-Methyladenosine. J Mol Biol. (2022) 434:167632. https://doi.org/10.1016/j.jmb.2022.167632
description: This work was supported by National Science Center grants UMO-2020/01/0/NZ6/00137 and 2020/39/B/NZ1/03054 to E.K. and UMO-2019/33/B/ST4/01422 to R.K., and by National Institutes of Health Grant R01GM076485 to D.H.M.
DOI: 10.5523/bris.1j3vex0yas0rz2ku42prh7evx9
title: Data from: Evolution of phenotypic disparity in the plant kingdom

description: Datasets and code underpinning the study of plant phenotypic disparity by Clark, Hetherington, Morris, Pressel, Duckett, Puttick, Schneider, Kenrick, Wellman and Donoghue, Nature Plants
DOI: 10.34740/kaggle/dsv/6241953
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.12770/c0278149-6d1b-4198-9b6a-a8b617fb7ae6
title: 2001 - ADCP de coque des navires océanographiques français

description: Données de courantométrie mesurées en continu par un ADCP de coque (Acoustic Doppler Current Profiler), validées et agrégées pour l'année 2001. Les navires océanographiques concernés sont : l'Atalante, le Suroît.
DOI: 10.12770/227e9f7b-ddfc-4004-b0e5-f4785d36d43f
title: Black Sea - Temperature and salinity observation collection V2

description: The Black Sea historical dataset includes all open access temperature and salinity in situ data from the Black Sea and Sea of Azov for period 1868-2014. The data were retrieved from the SeaDataNet infrastructure in the mid of 2015. Data quality has been analysed and checked using ODV software. Quality Flags of anomalous data have been revised using different QC procedures in conjunction with the visual expert check. Duplicates have been identified and excluded from the dataset.Data providers are:- Institute of Fishery Resources (IFR)- Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences- Hellenic Centre for Marine Research, Hellenic National Oceanographic Data Centre (HCMR/HNODC)- IFREMER / IDM / SISMER - Scientific Information Systems for the SEA- SHOM (SERVICE HYDROGRAPHIQUE ET OCEANOGRAPHIQUE DE LA MARINE)- All-Russia Research Institute of Hydrometeorological Information - World Data Centre (RIHMI-WDC) National Oceanographic Data Centre (NODC)- P.P.Shirshov Institute of Oceanology, RAS- Bulgarian National Oceanographic Data Centre(BGODC), Institute of Oceanology- Iv.Javakhishvili Tbilisi State University, Centre of Relations with UNESCO Oceanological Research Centre and GeoDNA (UNESCO)- National Institute for Marine Research and Development "Grigore Antipa"- Marine Hydrophysical Institute- Department of Navigation and Hydrography and Oceanography, Turkish Navy- Karadeniz Technical University, Faculty of Marine Sciences- Sinop University, Fisheries Faculty- Istanbul University, Institute of Marine Science and Management- Institute of Biology of the Southern Seas- Marine branch of Ukrainian Hydrometeorological Institute- Scientific - Research Firm "GAMMA"- National Environmental Agency of the Ministry of Environment Protection and Natural ResourcesFor data access, please regsiter at http://www.marine-id.orgThe dataset format is ODV binary collections. You can read, analyse and export from the ODV application provided by Alfred Wegener institute at http://odv.awi.de/
DOI: 10.12770/2a5c1396-f832-4500-8faa-8cfeeded1ebb
title: North Atlantic Ocean - Temperature and salinity observation collection V1.1

description: SeaDataNet Temperature and Salinity historical data collection, including revised quality flags after quality control with ODV.For data access please register at http://www.marine-id.orgThe dataset format is ODV binary collections. You can read, analyse and export from the ODV application provided by Alfred Wegener institute at http://odv.awi.de/
DOI: 10.12770/548d020c-24fd-4285-83eb-9f70e720998f
title: Nature des fonds :  pourcentage de sable, algues, corail, herbier et composition colorée (Sable/Algues/Corail) - côte ouest de La Réunion

description: Cette donnée permet de visualiser les taux de recouvrement des quatre principaux constituants de la plateforme récifale : le Sable, le Corail, les Algues et les Herbiers. Elle permet également de visualiser une synthèse des quatre séries de cartes précédentes. L'image est constituée de 4 bandes (une pour chaque constituant), dont 3 sont représentés (sable / algues / corail) sur une image composite RVB avec un étirement sur la gamme de valeurs comprise entre 0 et 100 %. A l'échelle du pixel, la somme des bandes fait 100 %.Pour le taux de recouvrement des herbiers, seules les zones disposant d'herbiers significatifs sont présentées dans les cartes suivantes (entre Saint-Gilles et Trou d’eau).
DOI: 10.12770/7d9d640b-e725-4a9e-9438-51ca8693ddfb
title: 2009 - ADCP de coque des navires océanographiques français

description: Données de courantométrie mesurées en continu par un ADCP de coque (Acoustic Doppler Current Profiler), validées et agrégées pour l'année 2009. Les navires océanographiques concernés sont : le Pourquoi pas ?, l'Atalante, le Suroît, le Beautemps-Beaupré.
DOI: 10.12770/1638c611-fa3c-4a47-97a8-3f8756f6540f
title: CHEMINI total dissolved iron concentrations from the EMSO-Azores observatory, 2013-2014

description: This dataset contains dissolved iron concentrations ((Fe(II) + Fe(III); µmol/l) acquired between September 2013 and February 2014 (n=332) using the CHEMINI Fe, a CHEmical MINIaturized analyser (samples taken every 24 hours, with daily in situ calibration using a 25 µmol/l iron standard, Vuillemin et al., 2009). The sample inlet was positioned on the mussel bed at the base of the Tour Eiffel edifice of the Lucky Strike hydrothermal vent (1695 depth).CHEMINI Fe (CF1) was mounted on the TEMPO module which was itself connected to the SeaMON East node of the EMSO-Azores observatory.
DOI: 10.12770/3f3dbf45-7fd2-4985-949f-88604aaff038
title: Turbidity data from the EMSO-Azores observatory, 2011-2012

description: This dataset contains turbidity (NTU) data acquired between July 2011 and July 2012 using a Wetlabs turbidimeter (ECO-BBRTD, serial # 215R) installed horizontally at 1.5 m height at the top of the SeaMoN East frame. The sensor was not calibrated as the sizes of the natural particles are unknown. Data was acquired every 15 minutes. The instrument is part of the SeaMoN East ecological monitoring node.