cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25345354
title: 20240305 Gray Figure 3 data

description: FIG 3 Copper, zinc, and nickel inhibit RclA activity in vitro. Reactions (500 µl) contained 10 mM HEPES-KOH buffer (pH 7.4), 160 µM NADH, 100 µM HOSCN, and the indicated concentrations of metal salts, and were started by addition of 10 nM RclA. I quantified NADH consumption at A340 for 1 min at 20°C and calculated specific activities as µmol NADH consumed min-1 mg-1 RclA (n=3-4 experimental replicates; error bars of 1 standard deviation). Asterisks indicate activities significantly different from that of RclA with no metals added in a given set of experiments (one-way ANOVA with Dunnett’s multiple comparisons test; ** = P&lt;0.01. *** = P&lt;0.001, **** = P&lt;0.0001). X symbols indicate that RclA precipitated at 100 µM CuCl2.
DOI: 10.6084/m9.figshare.25345354.v1
title: 20240305 Gray Figure 3 data

description: FIG 3 Copper, zinc, and nickel inhibit RclA activity in vitro. Reactions (500 µl) contained 10 mM HEPES-KOH buffer (pH 7.4), 160 µM NADH, 100 µM HOSCN, and the indicated concentrations of metal salts, and were started by addition of 10 nM RclA. I quantified NADH consumption at A340 for 1 min at 20°C and calculated specific activities as µmol NADH consumed min-1 mg-1 RclA (n=3-4 experimental replicates; error bars of 1 standard deviation). Asterisks indicate activities significantly different from that of RclA with no metals added in a given set of experiments (one-way ANOVA with Dunnett’s multiple comparisons test; ** = P&lt;0.01. *** = P&lt;0.001, **** = P&lt;0.0001). X symbols indicate that RclA precipitated at 100 µM CuCl2.
DOI: 10.6084/m9.figshare.25345363
title: 20240305 Gray Figure 4 data

description: <b>FIG 4 Sensitization of </b><b><i>E. coli</i></b><b> to HOSCN </b><b><i>in vivo </i></b><b>by copper is slight, and not RclA-dependent. </b><i>E. coli</i> strains MG1655 (wild-type), MJG1759 (MG1655 ∆<i>copA767</i>::<i>kan</i><sup>+</sup>), MJG1958 (MG1655 ∆<i>rclA747</i>), and MJG2358 (MG1655 ∆<i>rclA747</i> ∆<i>copA767</i>::<i>kan</i><sup>+</sup>) were grown in MOPS minimal medium without micronutrients containing 0.2% glucose, supplemented with 1 µM CuCl<sub>2</sub> and/or 400 µM HOSCN, as indicated, incubating at 37°C with shaking and measuring A<sub>600</sub> at 30-minute intervals for 24 hours (n=4 experimental replicates, with 3 technical replicates per experiment; error bars of 1 standard deviation).
DOI: 10.6084/m9.figshare.25345369
title: 20240305 Gray Figure 5 data

description: <b>FIG 5 Nickel enhancement of HOSCN toxicity is independent of RclABC. </b><i>E. coli</i> strains MG1655 (wild-type), MJG1958 (MG1655 ∆<i>rclA747</i>), and MJG0901 (MG1655 ∆<i>rclABC1</i>) were grown in MOPS minimal medium without micronutrients containing 0.2% glucose, supplemented with 300 µM NiSO<sub>4</sub> and/or 200 µM HOSCN, as indicated, incubating at 37°C with shaking and measuring A<sub>600</sub> at 30-minute intervals for 24 hours (n=3 experimental replicates, with 3 technical replicates per experiment; error bars of 1 standard deviation).
DOI: 10.7284/154856
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise NBP2202 using a Hawaii UHDAS instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/154868
title: Multiplexed data collected during research cruise NBP2202 using a HOBI HydroDAS instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/154858
title: Expendable Probe data collected during research cruise NBP2202 using a Sippican MK12 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/154867
title: Gravimeter data collected during research cruise NBP2202 using a Bell BGM-3 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/154865
title: Gyrocompass data collected during research cruise NBP2202 using a Yokogawa CMZ700B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/154873
title: INS (Inertial Navigation System) data collected during research cruise NBP2202 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/154859
title: Meteorological Station data collected during research cruise NBP2202 using a USAP RVDAS Metstation instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/154870
title: Multibeam Echosounder data collected during research cruise NBP2202 using a Kongsberg EM122 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/154863
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise NBP2202 using a LDEO pCO2 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/154860
title: Radiometer data collected during research cruise NBP2202 using a Biospherical GUV-2511 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/154869
title: Singlebeam Echosounder data collected during research cruise NBP2202 using a Knudsen 3260 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/154861
title: Water Temperature data collected during research cruise NBP2202 using a SeaBird SBE-38 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/154862
title: TSG (Thermosalinograph) data collected during research cruise NBP2202 using a SeaBird SBE-45 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/154871
title: TSG (Thermosalinograph) data collected during research cruise NBP2202 using a SeaBird SBE-45 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/154864
title: Winch data collected during research cruise NBP2202 using a Markey DUSH-5 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/154866
title: Winch data collected during research cruise NBP2202 using a Markey DUSH-5-5 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/154872
title: Winch data collected during research cruise NBP2202 using a Markey DUSH-9-11 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128401
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1508 using a Trimble SPS351 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126103
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1612 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/143277
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR2002 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/143279
title: Expendable Probe data collected during research cruise RR2002 using a Turo Quoll instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/143276
title: Meteorological Station data collected during research cruise RR2002 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/143280
title: Splitbeam Echosounder data collected during research cruise RR2002 using a Kongsberg EK80 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142153
title: Splitbeam Echosounder data collected during research cruise RR2003 using a Kongsberg EK80 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/159661
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise RR2311 using a SeaBird SBE-911+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115318
title: Expendable Probe data collected during research cruise SKQ201402S using a Sippican MK21 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137820
title: Anemometer data collected during research cruise SKQ201510S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137845
title: Nitrate data collected during research cruise SKQ201706T using a SeaBird SUNA V2 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.12608155
title: GRNIToolS_data
DOI: 10.5281/zenodo.12608156
title: GRNIToolS_data
DOI: 10.7284/132140
title: Water Temperature data collected during research cruise SKQ201707S using a SeaBird SBE-38 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137844
title: Nitrate data collected during research cruise SKQ201708T using a SeaBird SUNA V2 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.12608162
title: Metadata for most downloaded Ruby packages - June 2024
DOI: 10.5281/zenodo.12608163
title: Metadata for most downloaded Ruby packages - June 2024
DOI: 10.7284/137843
title: Nitrate data collected during research cruise SKQ201709S using a SeaBird SUNA V2 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132142
title: Water Temperature data collected during research cruise SKQ201709S using a SeaBird SBE-38 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132145
title: Water Temperature data collected during research cruise SKQ201712S using a SeaBird SBE-38 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137596
title: Anemometer data collected during research cruise SKQ201715S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137588
title: Anemometer data collected during research cruise SKQ201804S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137589
title: Anemometer data collected during research cruise SKQ201804S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Processed data created by vessel technician during a Field_expedition
DOI: 10.7284/137742
title: Anemometer data collected during research cruise SKQ201804S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137743
title: Anemometer data collected during research cruise SKQ201804S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.26139184
title: <b>Metagenome sequencing and 107 microbial genomes from across seamounts along in the Yap and Mariana trenches</b>

description: Microbes in the sediments across a series of seamounts along the island arc of the Yap and Mariana trenches were investigated by metagenome. In this study, we reconstructed 107metagenome-assembled genomes (MAGs), including 100bacteria and 7archaea. Of these MAGs, 26 (24.3%) were "near complete" (completeness &gt;90%), 50 (46.7%) were &gt;80% completeness, and 31 (29.0%) were &gt;75% completeness. Phylogenomic analysis revealed that over 85(n = 92) of these MAGs represented new taxa at different taxonomical levels. The species composition of these MAGs was most consistent with the previous reports, with the most abundant phyla being Proteobacteria (n = 39), Methylomirabilota (n = 27), and Nitrospirota (n = 7). These draft genomes provided novel data on species diversity and function in the seamountmicrobial community, which will provide reference data for extensive comparative genomic studies across crucial phylogenetic groups worldwide.
DOI: 10.7284/137560
title: Anemometer data collected during research cruise SKQ201818S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137561
title: Anemometer data collected during research cruise SKQ201818S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Processed data created by vessel technician during a Field_expedition
DOI: 10.7284/137714
title: Anemometer data collected during research cruise SKQ201818S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137715
title: Anemometer data collected during research cruise SKQ201818S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5255/ukda-sn-857257
title: The Views and Opinions of Glaucoma and Age-Related Macular Degeneration Patients on Vision Home-Monitoring: A UK-Based Focus Group Study, 2022

description: Objective: To investigate the views, hopes, and concerns of patients living with glaucoma and AMD regarding vision home-monitoring. 
Design: Qualitative study using focus groups and questionnaires. Participants were given three disease-relevant home-monitoring tests to try. The tests consisted of three visual field tests for the glaucoma groups (Melbourne Rapid Fields, Eyecatcher, Visual Fields Fast) and three acuity and/or contrast-sensitivity tests for AMD groups (AllEye, PopCSF, Spotchecks). Focus group data were thematically analyzed.
Setting: University meeting rooms in London, UK. 
Participants: Eight people with glaucoma (5 female, median age 74) and seven people with AMD (4 female, median age 77) volunteered through two UK based charities. Participants were excluded if they did not self-report a diagnosis of glaucoma or AMD and if they lived further than a one-hour travel distance from the University (to ensure minimal travel burden on participants). 
Results: Six themes emerged from focus groups, the two most frequently referenced being: ‘concerns about home-monitoring’ and ‘patient and practitioner access to results’. Overall, participants believed home-monitoring could provide patients with a greater sense of control, but also expressed concerns, including: the possibility of home-monitoring replacing face-to-face appointments; the burden placed on clinicians by the need to process additional data; struggles keeping up with requisite technologies; and potential anxiety from seeing worrying results. Most devices were scored highly for usability, though several practical improvements were suggested.
Conclusion: Patients with mild-to-moderate glaucoma and AMD expect vision home-monitoring to be beneficial, but have significant concerns about its potential implementation.
DOI: 10.7284/137839
title: Nitrate data collected during research cruise SKQ201818S using a SeaBird SUNA V2 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137548
title: Anemometer data collected during research cruise SKQ201903S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137549
title: Anemometer data collected during research cruise SKQ201903S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Processed data created by vessel technician during a Field_expedition
DOI: 10.7284/137702
title: Anemometer data collected during research cruise SKQ201903S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137703
title: Anemometer data collected during research cruise SKQ201903S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137532
title: Anemometer data collected during research cruise SKQ201914S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137533
title: Anemometer data collected during research cruise SKQ201914S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Processed data created by vessel technician during a Field_expedition
DOI: 10.7284/137686
title: Anemometer data collected during research cruise SKQ201914S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137687
title: Anemometer data collected during research cruise SKQ201914S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137509
title: Fluorometer data collected during research cruise SKQ201914S using a WETLabs WETStar instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/140999
title: Splitbeam Echosounder data collected during research cruise SKQ202002S using a Kongsberg EK80 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141000
title: Multibeam Echosounder data collected during research cruise SKQ202004T using a Kongsberg EM302 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141001
title: Multibeam Echosounder data collected during research cruise SKQ202004T using a Kongsberg EM302 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141003
title: Splitbeam Echosounder data collected during research cruise SKQ202010S using a Kongsberg EK80 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141004
title: Splitbeam Echosounder data collected during research cruise SKQ202012S using a Kongsberg EK80 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/150803
title: Anemometer data collected during research cruise SKQ202204S using a Gill WindObserver 75 instrument system onboard the platform RV Sikuliaq

description: Processed data created by vessel technician during a Field_expedition
DOI: 10.7284/150804
title: Anemometer data collected during research cruise SKQ202204S using a Gill WindObserver 75 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/150812
title: Anemometer data collected during research cruise SKQ202204S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/150813
title: Anemometer data collected during research cruise SKQ202204S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.24297421.v4
title: Data & Scripts for Fig. 4 and Fig. S8, S9

description: Leaf microbiome analysis of wild <i>A. thaliana</i> populations and neighbouring plants (2019-2020)
DOI: 10.7284/150814
title: Anemometer data collected during research cruise SKQ202204S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Processed data created by vessel technician during a Field_expedition
DOI: 10.7284/150815
title: Anemometer data collected during research cruise SKQ202204S using a RMYoung 85004 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/150805
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SKQ202204S using a SeaBird SBE-911+ instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/150793
title: Flowmeter data collected during research cruise SKQ202204S using a Krohne Optiflux 5000 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/150794
title: GNSS (Global Navigation Satellite System) data collected during research cruise SKQ202204S using a CCTech C-Nav 3050 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/150792
title: Gravimeter data collected during research cruise SKQ202204S using a Bell BGM-3 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/150795
title: Gyrocompass data collected during research cruise SKQ202204S using a Sperry NAVIGAT 2100 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/150796
title: Gyrocompass data collected during research cruise SKQ202204S using a Sperry NAVIGAT 2100 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/150806
title: INS (Inertial Navigation System) data collected during research cruise SKQ202204S using a Kongsberg Seapath 320+ instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/150797
title: Meteorological Station data collected during research cruise SKQ202204S using a Vaisala PTU307 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition