cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hwhmrj
title: Occurrence Download

description: A dataset containing 564013 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phasianus colchicus Linnaeus, 1758)",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is United States of America"
 ]
}

 The dataset includes 564013 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0257954-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8rqcjc
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Juncus leptospermus Buchenau"
 ]
}

 The dataset includes 60 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258916-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b3g8zn
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Camellia petelotii (Merr.) Sealy"
 ]
}

 The dataset includes 102 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035784-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6c4mcv
title: Occurrence Download

description: A dataset containing 5758 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "HasCoordinate is false",
 "TaxonKey is Acanthaceae"
 ]
}

 The dataset includes 5758 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021515-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.skdmdf
title: Occurrence Download

description: A dataset containing 137492 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ribes uva-crispa L.)",
 "HasCoordinate is true",
 "Geometry POLYGON ((25.280527 74.385866, 34 74.516506, 34 35.773364,\n 32.861584 35.588421, 26.375071 34.609982, 22.816449 34.504241, 13.627633 36.690862,\n 10.001544 38.719154, -0.356862 36.404548, -9.323257 35.627079, -12.292937 57.408982,\n 25.280527 74.385866))"
 ]
}

 The dataset includes 137492 records from 603 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035763-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m5kt8k
title: Occurrence Download

description: A dataset containing 7271 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Juncus kraussii Hochst."
 ]
}

 The dataset includes 7271 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258907-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s3tjjb
title: Occurrence Download

description: A dataset containing 53035 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Occurrence evidence)",
 "CoordinateUncertaintyInMeters is less than or equal to 2000.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Zero coordinate, Coordinate out of range, Coordinate invalid, Coordinate rounded, Geodetic datum invalid, Geodetic datum assumed WGS84, Coordinate reprojected, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate accuracy invalid, Coordinate precision invalid, Coordinate uncertainty meters invalid, Coordinate precision/uncertainty mismatch, Footprint SRS invalid, Footprint WKT mismatch, Footprint WKT invalid, Country coordinate mismatch, Country mismatch, Country invalid, Country derived from coordinates, Continent coordinate mismatch, Continent country mismatch, Continent invalid, Continent derived from country, Continent derived from coordinates, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Recorded date mismatch, Recorded date invalid, Recorded date unlikely, Taxon match fuzzy, Taxon match aggregate, Taxon match none, Depth not metric, Depth unlikely, Depth min max swapped, Depth non numeric, Elevation unlikely, Elevation min max swapped, Elevation not metric, Elevation non numeric, Modified date invalid, Modified date unlikely, Identified date unlikely, Identified date invalid, Basis of record invalid, Type status invalid, Multimedia date invalid, Multimedia URI invalid, References URI invalid, Error during interpretation, Individual count invalid, Individual count conflicts with occurrence status, Occurrence status unparsable, Occurrence status inferred from individual count, ccurrence status inferred from basis of record, Georeferenced date unlikely, Georeferenced date invalid, Ambiguous institution, Ambiguous collection, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch, Possibly on loan, Different owner institution)",
 "OccurrenceStatus is Present",
 "TaxonKey is Cervus elaphus Linnaeus, 1758",
 "Year 2000-2023"
 ]
}

 The dataset includes 53035 records from 298 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0257966-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3879472_d2.v1
title: Additional file 2 of CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components

description: Supportive immunohistochemistry (IH) and immunofluorescence (IF) data from the Human Protein Atlas ( http://www.proteinatlas.org/about/download ). The table contains a subsetof the data in the Human Protein Atlas version 13 corresponding to the data downloaded in TAB format, filtered by the supportive IH and IF information. (XLS 993 kb)
DOI: 10.6084/m9.figshare.c.3879472_d2
title: Additional file 2 of CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components

description: Supportive immunohistochemistry (IH) and immunofluorescence (IF) data from the Human Protein Atlas ( http://www.proteinatlas.org/about/download ). The table contains a subsetof the data in the Human Protein Atlas version 13 corresponding to the data downloaded in TAB format, filtered by the supportive IH and IF information. (XLS 993 kb)
DOI: 10.6084/m9.figshare.c.3879481_d1.v1
title: Additional file 1: of Correlation between patientsâ   reasons for encounters/health problems and population density in Japan: a systematic review of observational studies coded by the International Classification of Health Problems in Primary Care (ICHPPC) and the International Classification of Primary care (ICPC)

description: Table S1. Details of included studies. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3879481_d1
title: Additional file 1: of Correlation between patientsâ   reasons for encounters/health problems and population density in Japan: a systematic review of observational studies coded by the International Classification of Health Problems in Primary Care (ICHPPC) and the International Classification of Primary care (ICPC)

description: Table S1. Details of included studies. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3879472_d3.v1
title: Additional file 3 of CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components

description: HPA and GO subcellular compartments annotations. Tables showing the HPA and GO subcellular compartments annotations ranked by the absolute number and percentage of proteins assigned to each term. (XLS 24.5 kb)
DOI: 10.6084/m9.figshare.c.3879472_d3
title: Additional file 3 of CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components

description: HPA and GO subcellular compartments annotations. Tables showing the HPA and GO subcellular compartments annotations ranked by the absolute number and percentage of proteins assigned to each term. (XLS 24.5 kb)
DOI: 10.15468/dl.t33dkc
title: Occurrence Download

description: A dataset containing 5488 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma jeffersonianum (Green, 1827))"
 ]
}

 The dataset includes 5488 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039369-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3879463_d3
title: Additional file 2: Table S1. of Treatment of biofilms in bacterial vaginosis by an amphoteric tenside pessary-clinical study and microbiota analysis

description: List of raw and final sequencing results. (XLSX 2810Â kb)
DOI: 10.6084/m9.figshare.c.3879502_d2.v1
title: MOESM2 of Phenotypic landscape of non-conventional yeast species for different stress tolerance traits desirable in bioethanol fermentation

description: Additional file 2:Â Table S2. Source, geographical origin and details of stress tolerance characteristics of yeast strains used in this study.
DOI: 10.6084/m9.figshare.c.3881338_d1.v1
title: Additional file 1: Table S1 of Risk of obstetric anal sphincter injury increases with maternal age irrespective of parity: a population-based register study

description: Risk of OASI in first, second and third vaginal births at term with a live singleton fetus. Comparisons between complete case analyses and analyses based on imputed data as in Table 2 Model 2. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3881338_d1
title: Additional file 1: Table S1 of Risk of obstetric anal sphincter injury increases with maternal age irrespective of parity: a population-based register study

description: Risk of OASI in first, second and third vaginal births at term with a live singleton fetus. Comparisons between complete case analyses and analyses based on imputed data as in Table 2 Model 2. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.28053983
title: dataset_6

description: E-course 3 ECTS data for visualization
DOI: 10.57745/7j9wag
title: Script_Mesoscale_minimum_and_maximum_air_temperature.R

description: R script to obtain minimum (Tn) and maximum (Tx) air temperatures for the two sampling periods (first session, S1 and second session, S2) and the 20 landscape windows (ID_Window).
DOI: 10.57745/corpwb
title: SEAD_matrix_S2.txt

description: matrix of the number of pitfall traps (N_traps) and the activity-density of each seed-eating carabid species for the second sampling period (first session, S2) for the 75 winter cereal fields (in two fields, all traps were destroyed) (ID_Field) over the 20 landscape windows (ID_Window).
DOI: 10.57745/sm4q1g
title: Data_LAND_TEMP.txt

description: data* to perform models to investigate the effects of landscape on mesoscale air temperature. *Coordinates (X and Y) of the centroids of the 20 landscape windows (retrieved using the st_centroid and st_coordinates functions of the R package “sf”, Pebesma, 2018), and merging from “SN _habitat_amount_and_landscape_heterogeneity.txt” and “Mesoscale_minimum_and_maximum_air_temperature.txt”
DOI: 10.57745/bl3mvh
title: SAD_matrix_S1.txt

description: matrix of the number of pitfall traps (N_traps) and the activity-density of each carabid species for the first sampling period (first session, S1) for the 77 winter cereal fields (ID_Field) over the 20 landscape windows (ID_Window).
DOI: 10.57745/f4u2vw
title: Script_SFP.R

description: R script to obtain dataset of summarised farming practices (Farming_practices_1 and Farming_practices_2) for the 77 winter cereal fields (ID_Field) over the 20 landscape windows (ID_Window).
DOI: 10.57745/ggwv8d
title: SESCC.txt

description: dataset of seed-eating species carabid communities, with the (i) activity-density (AD_SE), (ii) species richness (Richness_SE) and (iii) species composition (Composition_SE_1 and Composition_SE_2) of seed-eating species (except rare seed-eating species for composition) for both sampling periods (first session, S1 and second session, S2) for the 77 winter cereal fields (ID_Field) over the 20 landscape windows (ID_Window).
DOI: 10.57745/glx78d
title: Hourly_air_temperature.txt

description: hourly air temperature (Temperature) dataset of the two loggers (ID_Logger) installed in each landscape window (ID_Window) for calculating and averaging the daily minimum (Tn, between 18 UTC the day before and 18 UTC, Date_Tn derived from Date_UTC) and the daily maximum (Tx, between 6 UTC and 6 UTC the day after, Date_Tx derived from Date_UTC) air temperature for each logger over all the days in each of the two sampling periods.
DOI: 10.57745/gxcpyf
title: Script_WC.R

description: R script to obtain dataset of the total weed cover (Weed_cover, percent cover of all species recorded in the three quadrats) for the 77 winter cereal fields (ID_Field) over the 20 landscape windows (ID_Window).
DOI: 10.57745/nc43eq
title: Script_ASCC.R

description: R script to (i) obtain dataset of all species carabid communities (AD, Richness, Composition 1_and Composition_2) for both sampling periods (first session, S1 and second session, S2) for the 77 winter cereal fields (ID_Field) over the 20 landscape windows (ID_Window) and (ii) test the effect of session on AD and Richness.
DOI: 10.57745/ngcbmo
title: Script_SEM_SESCC.R

description: R script to perform SEMs to investigate the effects of local, landscape and mesoclimatic factors on seed-eating species carabid communities and their cascading effects on seed predation rates for two weed species (P. annua and V. arvensis) for both sampling periods (first session, S1 and second session, S2).
DOI: 10.57745/nya7nh
title: STG.txt

description: dataset of species trophic group (main source: online database carabids.org; Homburg et al., 2014) with the following typology: "Seed-eater (granivorous)" = seed-eating (granivorous) species, "Seed-eater (omnivorous)" = seed-eating (omnivorous) species and "carnivorous" = carnivorous species.
DOI: 10.57745/pa9bqc
title: SN_habitat_amount_and_landscape_heterogeneity.txt

description: semi-natural habitat amount and landscape heterogeneity dataset, with (i) hedgerow amount (Hedgerow_amount, that is the total length (in meters) of hedgerows, computed from Hedgerow_network.shp using ArcGis 10.8.1 software), (ii) grassland amount (Grassland_amount), (iii) compositional (Compositional_heterogeneity), and (iv) configurational heterogeneity (Configurational_heterogeneity) (that is, the proportion of the landscape window occupied by grasslands, Shannon's diversity index, and the proportion of heterogeneous pairs of adjacent pixels, computed from Land_cover.asc using Chloe software) for the 20 landscape windows (ID_Window).
DOI: 10.57745/suc1en
title: WSPC_matrix.txt

description: matrix of weed species percentage cover (i.e. percentage cover per species) for the three quadrats performed in the 77 winter cereal fields over the 20 landscape windows (ID_WindowFieldQuadrat).
DOI: 10.57745/wvhkfl
title: Mesoscale_minimum_and_maximum_air_temperature.txt

description: Minimum (Tn) and maximum (Tx) air temperatures [that is, the average of the average daily minimum and maximum air temperatures measured by the two loggers (or one in the landscape window where one logger fell) over all the days in a given sampling period] for both sampling periods (first session, S1 and second session, S2) and the 20 landscape windows (ID_Window).
DOI: 10.57745/x0edhl
title: SEAD_matrix_S1.txt

description: matrix of the number of pitfall traps (N_traps) and the activity-density of each seed-eating carabid species for the first sampling period (first session, S1) for the 77 winter cereal fields (ID_Field) over the 20 landscape windows (ID_Window).
DOI: 10.57745/x3d63t
title: WSP.txt

description: weed seed predation dataset, with (i) the total number of seed exposed (N_seed_exposed), (ii) the total number of seeds remained (N_seed_remained) [both pooled at the field level from the two (in fields where one of the three cages enclosing seed cards fell) or three cards (N_cards)], and (iii) the seed predation rate (Seed_predation_rate) for both sampling periods (first session, S1 and second session, S2) and species (Poa_annua and Viola_arvensis) for the 77 (S1) and the 76 (S2, in the field where all the cages had been destroyed) winter cereal fields (ID_Field) over the 20 landscape windows (ID_Window).
DOI: 10.57745/4wk1nr
title: ASCC.txt

description: dataset of all species carabid communities, with the (i) activity-density (AD), (ii) species richness (Richness) and (iii) species composition (Composition_1 and Composition_2) of all species (except rare species for composition) for both sampling periods (first session, S1 and second session, S2) for the 77 winter cereal fields (ID_Field) over the 20 landscape windows (ID_Window).
DOI: 10.57745/bbrvtt
title: SFP.txt

description: dataset of summarised farming practices (Farming_practices_1 and Farming_practices_2) for the 77 winter cereal fields (ID_Field) over the 20 landscape windows (ID_Window).
DOI: 10.57745/erdto2
title: Data_FP_WC_LAND_TEMP_ASCC_WSP.txt

description: data* to perform models to investigate (i) the effects of farming practices, weed cover, landscape and mesoscale air temperature on all species carabid communities and (ii) the effects of all species carabid communities on the seed predation rates of V. arvensis and P. annua for both sampling periods. *Coordinates (X and Y) of the central sampling point (retrieved using the st_coordinates functions of the R package “sf”, Pebesma, 2018), and merging from “Data_LAND_TEMP.txt”, “SFP.txt”, “WC.txt”, “ASCC.txt” and “WSP.txt”.
DOI: 10.57745/hkjlxk
title: Script_WSP.R

description: R script to test the effect of session on the seed predation rate of (i) Poa annua and (ii) Viola arvensis and the effect of species on the seed predation rate for the (i) first and (ii) the second session.
DOI: 10.57745/o8ozn0
title: WC.txt

description: dataset of the total weed cover (Weed_cover, percent cover of all species recorded in the three quadrats) for the 77 winter cereal fields (ID_Field) over the 20 landscape windows (ID_Window).
DOI: 10.57745/oxz212
title: FPI.txt

description: dataset of information collected about the farming practices conducted in the 77 winter cereal fields (ID_Field) over the 20 landscape window (ID_Window), with (i) presence of grassland in the rotation over the period 2020 – 2022 (P_grassland: grassland/no grassland), (ii) presence of ploughing (P_ploughing: ploughing /no ploughing), (iii) number of visits for tillage (excluding ploughing) and sowing operations (N_tillageEP_sowing), (iv) number of visits for pesticides operations, including herbicides (before or after sowing), fungicides, and insecticides (N_pest), (v) presence of organic fertilisation (P_OF: OF/no OF), and (vi) number of visits for mineral fertilisation operations (N_MF).
DOI: 10.57745/wxaipl
title: Script_SEM_ASCC.R

description: R script to perform SEMs to investigate the effects of local, landscape and mesoclimatic factors on all species carabid communities and their cascading effects on seed predation rates for two weed species (P. annua and V. arvensis) for both sampling periods (first session, S1 and second session, S2).
DOI: 10.57745/za0ha1
title: Script_SESCC.R

description: R script to (i) obtain dataset of seed-eating species carabid communities (AD_SE, Richness_SE, Composition_SE_1 and Composition_SE_2) for both sampling periods (first session, S1 and second session, S2) for the 77 winter cereal fields (ID_Field) over the 20 landscape windows (ID_Window) and (ii) test the effect of session on AD_SE and Richness_SE.
DOI: 10.57745/zc3elf
title: SAD_matrix_S2.txt

description: matrix of the number of pitfall traps (N_traps) and the activity-density of each carabid species for the second sampling period (first session, S2) for the 75 winter cereal fields (in the two fields where all traps were destroyed) (ID_Field) over the 20 landscape window (ID_Window).
DOI: 10.57745/znupcy
title: Data_FP_WC_LAND_TEMP_SESCC_WSP.txt

description: data* to perform models to investigate (i) the effects of farming practices, weed cover, landscape and mesoscale air temperature on seed-eating species carabid communities and (ii) the effects of seed-eating species carabid communities on the seed predation rates of V. arvensis and P. annua for both sampling periods. *Coordinates (X and Y) of the central sampling point (retrieved using the st_coordinates functions of the R package “sf”, Pebesma, 2018), and merging from “Data_LAND_TEMP.txt”, “SFP.txt”, “WC.txt”, “SESCC.txt” and “WSP.txt”.
DOI: 10.6084/m9.figshare.c.3881317_d5.v1
title: Additional file 5: of Season, but not symbiont state, drives microbiome structure in the temperate coral Astrangia poculata

description: OTUs consistently detected in â Ľâ  90% of Astrangia poculata colonies in this study. OTUs identified to the lowest taxonomic level possible, with corresponding percentage of occurrence within the test samples from this study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3881317_d5
title: Additional file 5: of Season, but not symbiont state, drives microbiome structure in the temperate coral Astrangia poculata

description: OTUs consistently detected in â Ľâ  90% of Astrangia poculata colonies in this study. OTUs identified to the lowest taxonomic level possible, with corresponding percentage of occurrence within the test samples from this study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3881365_d2.v1
title: Additional file 11: Table S4. of Recent urbanization in China is correlated with a Westernized microbiome encoding increased virulence and antibiotic resistance genes

description: Number of taxa and genes identified in analysis. Number of taxa (and genes) identified through 16S rRNA sequencing or whole genome sequencing at each taxonomic level after filtering taxa (or genes) absent from more than one quarter of the samples. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3881329_d6.v1
title: Additional file 15: of How often do mosquitoes bite humans in southern England? A standardised summer trial at four sites reveals spatial, temporal and site-related variation in biting rates

description: Table S5. Data used in this study. (XLSX) (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3881365_d2
title: Additional file 11: Table S4. of Recent urbanization in China is correlated with a Westernized microbiome encoding increased virulence and antibiotic resistance genes

description: Number of taxa and genes identified in analysis. Number of taxa (and genes) identified through 16S rRNA sequencing or whole genome sequencing at each taxonomic level after filtering taxa (or genes) absent from more than one quarter of the samples. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3881380_d1.v1
title: MOESM1 of Changes in DNA methylation in naĂŻve T helper cells regulate the pathophysiological state in minimal-change nephrotic syndrome

description: Additional file 1. MIAMI results of 85 co-occurring genes in Th0s identified in all 3 comparisons.
DOI: 10.6084/m9.figshare.c.3881329_d6
title: Additional file 15: of How often do mosquitoes bite humans in southern England? A standardised summer trial at four sites reveals spatial, temporal and site-related variation in biting rates

description: Table S5. Data used in this study. (XLSX) (XLSX 44Â kb)