cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/e1j-ga7-5qc
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3le-4ta-sya
title: Globigerina

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/blh-cw8-x5l
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.y5kcfw
title: Occurrence Download

description: A dataset containing 171180 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tursiops truncatus (Montagu, 1821)"
 ]
}

 The dataset includes 171180 records from 898 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029190-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wpprnv
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (India, China, Myanmar, Singapore, Viet Nam, Cambodia, Indonesia, Nepal, Philippines, Malaysia, Chinese Taipei, Bangladesh, Lao People’s Democratic Republic, Thailand, Bhutan)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cytisus Desf."
 ]
}

 The dataset includes 30 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029196-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15392473
title: Materials for Benchmarking Spectral Library and Database Search Approaches for Metaproteomics Using a Ground-Truth Microbiome Dataset

description: Mass spectrometry-based metaproteomics, the identification and quantification of thousands of proteins expressed by complex microbial communities, has become pivotal for unraveling functional interactions within microbiomes. However, metaproteomics data analysis encounters many challenges, including the search of tandem mass spectra against a protein sequence database using proteomics database search algorithms. We used a ground-truth dataset to assess a spectral library searching method against established database searching approaches. Mass spectrometry data collected by data-dependent acquisition (DDA-MS) was analyzed using database searching approaches (MaxQuant and FragPipe), as well as using Scribe with Prosit predicted spectral libraries. We used FASTA databases that included protein sequences from microbial species present in the ground-truth dataset along with background protein sequences, to estimate error rates and assess the effects on detection, peptide-spectral match quality, and quantification. Using the Scribe search engine resulted in more proteins detected at a 1% false discovery rate (FDR) compared to MaxQuant or FragPipe, while FragPipe detected more peptides verified by PepQuery. Scribe was able to detect more low-abundance proteins in the microbiome dataset and was more accurate in quantifying the microbial community composition. This research provides insights and guidance for metaproteomics researchers aiming to optimize results in their analysis of DDA-MS data.
DOI: 10.5281/zenodo.15392474
title: Materials for Benchmarking Spectral Library and Database Search Approaches for Metaproteomics Using a Ground-Truth Microbiome Dataset

description: Mass spectrometry-based metaproteomics, the identification and quantification of thousands of proteins expressed by complex microbial communities, has become pivotal for unraveling functional interactions within microbiomes. However, metaproteomics data analysis encounters many challenges, including the search of tandem mass spectra against a protein sequence database using proteomics database search algorithms. We used a ground-truth dataset to assess a spectral library searching method against established database searching approaches. Mass spectrometry data collected by data-dependent acquisition (DDA-MS) was analyzed using database searching approaches (MaxQuant and FragPipe), as well as using Scribe with Prosit predicted spectral libraries. We used FASTA databases that included protein sequences from microbial species present in the ground-truth dataset along with background protein sequences, to estimate error rates and assess the effects on detection, peptide-spectral match quality, and quantification. Using the Scribe search engine resulted in more proteins detected at a 1% false discovery rate (FDR) compared to MaxQuant or FragPipe, while FragPipe detected more peptides verified by PepQuery. Scribe was able to detect more low-abundance proteins in the microbiome dataset and was more accurate in quantifying the microbial community composition. This research provides insights and guidance for metaproteomics researchers aiming to optimize results in their analysis of DDA-MS data.
DOI: 10.15468/dl.99ajrr
title: Occurrence Download

description: A dataset containing 6456 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lagerstroemia indica L."
 ]
}

 The dataset includes 6456 records from 513 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029198-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28928159
title: Foraging.zip

description: Imaging data of crawling C. elegans on an agar plate. The imaging system was designed to translocate around a fixed-position assay plate. As the worm moves on the surface of the plate, the system follows the movements of the worm while capturing images at 4 Hz and recording its centre-of-mass position.
DOI: 10.6084/m9.figshare.29049170
title: Experimental Study on Sediment Incipient Motion Characteristics in the Yangtze River Source Region

description: The experiments were conducted in a recirculating open-channel flume system at the Key Laboratory of River-Lake Regulation and Flood Control in the Middle and Lower Reaches of the Yangtze River, Ministry of Water Resources.. The tilting flume is 12m long, 0.35 m wide, and 0.5 m deep, with an adjustable slope.
DOI: 10.15468/dl.ctxhzc
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((1.78995 42.47441,1.789 42.47129,1.79345 42.47008,1.79402 42.47394,1.78995 42.47441))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 73 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029201-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mg4bhd
title: Occurrence Download

description: A dataset containing 998 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thunbergia laurifolia Lindl."
 ]
}

 The dataset includes 998 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029204-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p2v8e6
title: Occurrence Download

description: A dataset containing 2608 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thevetia peruviana (Pers.) K.Schum."
 ]
}

 The dataset includes 2608 records from 279 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029202-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7924/r47d34n91
title: Data from: Differential sensitivity to interepitope spacing in mast cells and B cells enables design of hypoallergenic allergen vaccine immunogens

description: Therapeutic allergen vaccine immunogens can trigger IgE-mediated mast cell activation, resulting in allergic reactions. Here, we report on a mode of hypoallergenic immunogen design that enables immunization against IgE-reactive peptide B cell epitopes by optimizing the distance between epitopes. Using DNA-based model immunogens, we show that mast cells and B cells exhibit idiosyncratic sensitivity to interepitope spacing, with mast cell activation being dampened by high interepitope spacing while B cells remain responsive to identical immunogen configurations. To exploit this finding, we construct hypoallergenic immunogens based on supramolecular peptide nanofibers with ultralow epitope density that, when used as an allergen vaccine, raise protective allergen-neutralizing IgG antibody responses. This study provides a proof-of-concept for a mode of hypoallergenic immunogen design based on nanoscale control of the distances between IgE-reactive epitopes, which may enable allergen vaccination against IgE-reactive epitope targets in the absence of allergic reactogenicity.
DOI: 10.15468/dl.xpjzcy
title: Occurrence Download

description: A dataset containing 10363 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acridotheres cristatellus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 10363 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002203-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxm99x
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "CoordinateUncertaintyInMeters 0.0-1060.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Otolithes ruber (Bloch & Schneider, 1801)"
 ]
}

 The dataset includes 151 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002403-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.jcp.30406963
title: Supplement Number 1

description: combined_results
DOI: 10.60893/figshare.jcp.30406963.v1
title: Supplement Number 1

description: combined_results
DOI: 10.60893/figshare.jcp.30406966
title: Supplement Number 2

description: combined_charged_results
DOI: 10.60893/figshare.jcp.30406966.v1
title: Supplement Number 2

description: combined_charged_results
DOI: 10.60893/figshare.jcp.30406969
title: Supplement Number 3

description: combined_results_MSE_loss
DOI: 10.60893/figshare.jcp.30406969.v1
title: Supplement Number 3

description: combined_results_MSE_loss
DOI: 10.26207/3wea-jt46
title: Data for "Phosphorylation modulates secondary structure of intrinsically disorder regions in RNA polymerase II"

description: This dataset contains experimental data collected for "Phosphorylation modulates secondary structure of intrinsically disorder regions in RNA polymerase II". The data are organized into four subfolders based on the experimental technique: LC-MS2 (Nano-liquid chromatography tandem mass spectrometry), MALDI-MS (Matrix-assisted laser desorption/ionization-time of flight mass spectrometry), NMR (nuclear magnetic resonance spectroscopy), and SAXS (small-angle x-ray scattering).
DOI: 10.6084/m9.figshare.23256077.v1
title: Research data.gph

description: <strong>Eco-environmental policies and changes in farmers' ecological welfare from the perspective of geographical location: Evidence from nature reserves in China</strong>
DOI: 10.6084/m9.figshare.23256077
title: Research data.gph

description: <strong>Eco-environmental policies and changes in farmers' ecological welfare from the perspective of geographical location: Evidence from nature reserves in China</strong>
DOI: 10.15468/dl.cj6jwj
title: Occurrence Download

description: A dataset containing 383 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pristimantis zeuctotylus (Lynch & Hoogmoed, 1977)"
 ]
}

 The dataset includes 383 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006108-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmzxjh
title: Occurrence Download

description: A dataset containing 557948 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Carex flacca"
 ]
}

 The dataset includes 557948 records from 2288 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029143-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qxjfs8
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Impatiens parviflora DC."
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000312-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2dcxur
title: Occurrence Download

description: A dataset containing 487 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acartia tonsa",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 487 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085598-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18237623
title: Deparia petersenii (Kunze) M.Kato. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:33
DOI: 10.5281/zenodo.18237622
title: Deparia petersenii (Kunze) M.Kato. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:33
DOI: 10.15468/dl.cs9hzk
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"USA.11.11_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007546-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5pzvfv
title: Occurrence Download

description: A dataset containing 4226 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thunbergia grandiflora (Roxb. ex Rottler) Roxb."
 ]
}

 The dataset includes 4226 records from 272 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029203-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqsf9p
title: Occurrence Download

description: A dataset containing 122046 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Antarctica, South America, North America)",
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Orchidaceae"
 ]
}

 The dataset includes 122046 records from 314 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029197-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29060489
title: [WICS/CSBC] Impacto dos Grandes Modelos de Linguagem no Ensino de Computação: Percepção dos Estudantes sobre Aprendizado e Dependência

description: Material suplementar do artigo "Impacto dos Grandes Modelos de Linguagem no Ensino de Computação: Percepção dos Estudantes sobre Aprendizado e Dependência"<br>
DOI: 10.15468/dl.g4t7vf
title: Occurrence Download

description: A dataset containing 279353 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platanus ×hispanica Mill. ex Münchh."
 ]
}

 The dataset includes 279353 records from 701 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029199-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mu256
title: Occurrence Download

description: A dataset containing 187 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thyrsostachys siamensis Gamble"
 ]
}

 The dataset includes 187 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029208-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15400240
title: Developing Translation Problem-Solving Behaviors through Exploratory Talk-Driven Collaborative Learning
DOI: 10.15468/dl.ryy9ht
title: Occurrence Download

description: A dataset containing 5074 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Washingtonia robusta H.Wendl."
 ]
}

 The dataset includes 5074 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029210-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y494ha
title: Occurrence Download

description: A dataset containing 10338 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lethocerus Mayr, 1853"
 ]
}

 The dataset includes 10338 records from 140 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029211-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zf6gf
title: Occurrence Download

description: A dataset containing 7462 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Toona ciliata M.Roem."
 ]
}

 The dataset includes 7462 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029212-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/prk-1w0-vgw
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r4t-ksw-ryx
title: Cupuladria canariensis (Busk, 1859)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.yngj9x
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Honduras",
 "TaxonKey is one of (Alouatta palliata palliata, Alouatta palliata)"
 ]
}

 The dataset's 2 records were derived from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023443-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/epy-np7-3ev
title: Membranipora de Blainville, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p29-d0n-hx6
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8ag-da1-f57
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fp9-lyw-41n
title: Reptadeonella violacea (Johnston, 1847)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2l1-k4a-9pv
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t6m-alr-pxx
title: Savignyella lafontii (Audouin, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/01d-q39-86f
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/evm-039-eg0
title: Stephanollona contracta (Waters, 1899)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ccm-0cd-kxx
title: †Belemnitida

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rme-bt9-xce
title: Mollia patellaria (Moll, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2eq-z79-y1k
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pnl-ep7-43s
title: Gen. indet. sp. indet.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dgg-rn6-5xr
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/617-6zh-qks
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wkt-3bg-hzz
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.fayejp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apium graveolens",
 "Country is Angola",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023454-250811113504898/datasets/export for details.
DOI: 10.3535/drl-t6n-914
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y4g-dnh-njk
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jfb-8zx-xtq
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m2b-81k-n6s
title: Floridina Jullien, 1881

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.