cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.d45g9j0/1
title: Data for Buzatto et al 2018 Proc B

description: This file has two tabs. The first one contains all the data for the selection applied on fighter males of the mite Rhizoglyphus echinopus. Each row contains information for one male measured during the experiment, and the columns contain information about (respectively from left to right): generation (1 to 10); replicate selection line; selection direction (up for thicker legs and down for thinner legs); the ID of the line (replicate and direction combined); the length of the anterior coxae suture (proxy for body size; see methods); the	width of 3rd right leg (the fighting leg, measured at the base; see methods); the residual from a linear model describing the relationship between the last two variables (the allometry of the third pair of legs); whether that individual was selected as a sire for the next generation; and the number of offspring from this individual that mated and was measured in the following generation. The other tab has similar information, but only for generation 9, and including scramblers and females as well (in addition to the fighters), for investigation of the correlated evolution resulting from morph-specific selection. This tab also has the information of the family ID (since fighters, scramblers and females were sourced from a variety of different families within each line) and the sex/morph of each individual.
DOI: 10.5061/dryad.dc611p0/1
title: Metal pollution gradient exploration scores

description: This file contains novel environment exploration scores for great tits residing at study sites located across a metal pollution gradient in Antwerp, Belgium, in 2017.  The study sites were:  Fort 4 (F4), Fort 5 (F5), Fort 6 (F6/CDE), Fort 7 (F7), Fort 8 (F8) and Umicore (UM).  UM is closest to the pollution source and F4 farthest away.  UM and F8 were grouped into one site for final analysis.  Band number, colors and PIT tag are three different individual identity markers.  Basic body measurements are also given, including body mass on the night of capture (weight in) and body mass measured after the personality test on the following morning (weight out).
DOI: 10.5061/dryad.dc611p0/2
title: Metal pollution gradient STI data

description: This file contains behavioral measurements collected during simulated territory intrusions (STIs) performed at study sites across a metal pollution gradient in Antwerp, Belgium, in 2017.  Moving away from the pollution source, the study sites were Umicore (UM), Fort 8 (F8), Fort 7 (F7), Fort 5 (F5) and Fort 4 (F4).  UM and F8 were grouped into one site for the final analysis.  Behaviors measured for males during the 3 min STI were: latency to approach (min), approach distance (MinDist, m), time on the decoy (min), and number of calls, songs, dives and attacks on the decoy.  Scores from a principal components analysis performed on this data are also included in the file.  For females, latency and approach distance were measured, and aggressive behavior was scored (Fem Score) as described in the manuscript.
DOI: 10.5061/dryad.dc611p0/3
title: Metal pollution gradient hissing data

description: This file contains results from hissing tests performed on female great tits across a metal pollution gradient in Antwerp, Belgium, in 2017.  Moving away from the pollution source, the study sites were Umicore (UM), Fort 8 (F8), Fort 7 (F7), Fort 6 (Fort 6/CDE), Fort 5 (F5) and Fort 4 (F4).  UM and F8 were grouped into one site for analysis.  Hissing behavior is a form of nest defense.  Thus, a larger number of hisses indicates more intense nest defense.  The ND score (nest defense score) was not used in this paper, but increases with intensity of nest defense.  Information on female aggressive and exploration behavior is also contained in this file, where available.
DOI: 10.5061/dryad.hk4948n/1
title: Vertical stratification of herbivores and parasitoids on individual tree species

description: Vertical stratification of 10,225 herbivores and 1,256 reared parasitoids among three canopy levels of individual trees. Herbivores were collected from canopies of 59 trees (8 species) from 0.2 ha plot in the temperate deciduous forest (Lanžhot, South Moravia, Czech Republic) using aerial working platform (up to 43 height).
DOI: 10.5061/dryad.j11fh/1
title: GeneFlowSupplement_Maple

description: This maple worksheet contains computations and examples
to suppement the paper "The Effect of Gene Flow on Coalescent-based Species-tree inference."

In particular, the formula for the concordant
triple frequency is derived, the formula is shown to agree
with the numerical computations from COALGF via an example, and the limits referenced in the section "Analytic Results for the Isolation with Migration Model" are computed explicitly.
DOI: 10.5061/dryad.k658bh2/1
title: Opuntia robusta sexual polymorphism

description: Contains files used for comparative analyses of males females and hermaphrodites in traits of Opuntia robusta including rooting and budding in detached cladodes, transpiration rates (based on changes of weight loss in detaches cladodes), survival and causes of mortality of cladodes, flowering frequency in terminal cladodes, growth parameters of the logistic curve and shrinkage rates if any. Missing data are represented as dots.
DOI: 10.5061/dryad.m67g1/1
title: Dataset IOHEXOL

description: mGFR: measured glomerular filtration rate, eGFR:estimated glomerular filtration rate, eGFR MDRD: estimated glomerular filtration rate by Modification of Diet in Renal Disease with ethnic factor, eGFRMDRDnef: estimated glomerular filtration rate by Modification of Diet in Renal Disease without ethnic factor, eGFR CKD-EPIScr:estimated glomerular filtration rate by Chronic Kidney Disease-Epidemiology Collaboration equation based on serum creatinine only with ethnic factor, eGFRCKD-EPI Scrnef: estimated glomerular filtration rate by Chronic Kidney Disease-Epidemiology Collaboration based on serum creatinine only without  ethnic factor, eGFRSCrCys: estimated glomerular filtration rate by Chronic Kidney Disease-Epidemiology Collaboration  combining  creatinine and cystatine C with  ethnic factor, eGFRSCrCysnef: estimated glomerular filtration rate by Chronic Kidney Disease-Epidemiology Collaboration  combining  creatinine and cystatine C without  ethnic factor.
DOI: 10.5061/dryad.nv1sv/1
title: Genome assembly of Amphiprion frenatus

description: Genome assembly of A. frenatus in fasta format. The genome was obtained with a combination of high-coverage Illumina short paired-end reads (350 bo insertion size), Illumina mate-pairs (3 kb insertion sizes) and low-coverage long Pacbio reads. For more information, please refer to the publication.
DOI: 10.5061/dryad.nv1sv/2
title: Structural genome annotation of Amphiprion frenatus

description: Structural genome annotation of Amphiprion frenatus genome, in gff3 format. Structural annotation was obtained with a combination of ab initio and RNAseq-data based approaches. Final gene models were obtained with MAKER2. For more information, please refer to the publication.
DOI: 10.5061/dryad.nv1sv/3
title: Amphiprion frenatus protein sequences and annotation

description: Predicted protein sequences from Amphiprion frenatus genome assembly, in fasta format. Each protein is annotated with the best blast hit with SwissProt database. For more information, please refer to the publication.
DOI: 10.5061/dryad.nv1sv/4
title: Amphiprion frenatus CDS sequences and annotation

description: Predicted coding sequences (CDS) sequences from Amphiprion frenatus genome assembly, in fasta format. Each CDS is annotated with the best blast hit with SwissProt database. For more information, please refer to the publication.
DOI: 10.5061/dryad.nv1sv/5
title: Mitochondrial genome Amphiprion frenatus

description: The mitochondrial genome of Amphiprion frenatus, in fasta format. The mitochondrial genome was obtained by assembling short Illumina reads with MITObim. For further information, please refer to the publication.
DOI: 10.5061/dryad.pb50v53/1
title: All data- Urban field and chamber experiments

description: This file includes all data for the described manuscript. The first sheet of the .xlsx is field data, and the second sheet is phytotron chamber experiment data.
DOI: 10.5061/dryad.q4f4ns6/1
title: Pam_Lat_Longs

description: List of latitude and longitude coordinates for Pamlico Sound, NC.  This file is used when generating s
DOI: 10.5061/dryad.q4f4ns6/2
title: s_predict

description: Locations for s, needed when estimating the diet using the spatial estimator and for simulating diet data across the Pamlico Sound surface.
DOI: 10.5061/dryad.r464h5d/1
title: Multi-unit VOI functions

description: Code to simulate and analyze data for multi-unit value of information (VOI) problems in Bennett et al. (J. Appl. Ecol.)
DOI: 10.5061/dryad.v2j62h1/1
title: Kou et al. 2018_Data Appendix

description: Data from: Dryland soils in northern China sequester carbon during the early-2000s warming hiatus period
DOI: 10.5061/dryad.vp34f2q/1
title: eTables Supplemental

description: Supplemental tables for Socioeconomic Determinants of Outcome after Childhood Arterial Ischemic Stroke
DOI: 10.17632/ydxvdrchg2.1
title: Data for: Dynamic Design and Vibration Testing of CFRP Drive-line System Used in Heavy-duty Machine Tool
DOI: 10.5061/dryad.14g26j8/1
title: Seed release model and field data

description: Folder contains: 1) field data of 7 species in .csv format. 2) matlabcode of the abscission submodel presented in the paper. 3) matlabscripts for all figures. 4) input data for figures and model.
DOI: 10.5061/dryad.1b1f023/1
title: Genotype data

description: Genotypes of males, females and offspring (eggs) used in the parentage assignment.
DOI: 10.5061/dryad.1b1f023/2
title: Paternity assesment data

description: Assesment of multiple and single paternity in offspring batches.
DOI: 10.5061/dryad.1bv87/1
title: DIC Data (0% Nominal Waviness)

description: DIC Data for the 0% nominal waviness specimens. Data is exported from Istra-4D in a standardized file type.
DOI: 10.5061/dryad.1bv87/2
title: DIC Data (10% Nominal Waviness)

description: DIC Data for the 10% nominal waviness specimens. Data is exported from Istra-4D in a standardized file type.
DOI: 10.5061/dryad.1bv87/3
title: DIC Data (15% and 17.5% Nominal Waviness)

description: DIC Data for the 15% and 17.5% nominal waviness specimens. Data is exported from Istra-4D in a standardized file type.
DOI: 10.5061/dryad.1bv87/4
title: DIC Data (20% and 25% Nominal Waviness)

description: DIC Data for the 15% and 17.5% nominal waviness specimens. Data is exported from Istra-4D in a standardized file type.
DOI: 10.5061/dryad.1bv87/5
title: Load Data, Microscopy Images, and Ultrasound Images

description: Archive containing: The load-displacement data for all specimens, recorded during load to failure. The raw microscopy images captured for sectioned specimens. The ultrasound images for all specimens. All file types are standardized.
DOI: 10.5061/dryad.2pp12mt/1
title: Benson et al. juvenile white shark shark survival data

description: Survival monitoring data from tracking satellite tagged juvenile white sharks.  Data includes ID numbers, start and end dates of tracking data, fate of sharks at end of tracking period, total length in cm at tagging, location (Mexico or US), and sex.
DOI: 10.5061/dryad.60s6123/1
title: ASamuelson_land classification in pollinator ecology_data

description: Proportion of 8 land-use classes at four radii (100m, 250m, 500m, 750m) for each site in the case study, from which the Principle Components Analysis and Cluster Analysis were performed.

Prop_impX: proportion impervious surface at Xm radius, Prop_flowX: proportion flower-rich habitat at Xm radius, Prop_domesticinfrastructureX: proportion domestic infrastructure  at Xm radius, Prop_openX: proportion open land at Xm radius,	Prop_treeX: proportion tree cover at Xm radius, Prop_agX: proportion agricultural land at Xm radius, Prop_gardX: proportion gardens at Xm radius, Prop_roadX: proportion roads at Xm radius.
DOI: 10.5061/dryad.6ck1816/1
title: Abundance and chronic anthropogenic disturbance at two vegetation types

description: Data for species abundance and chronic anthropogenic disturbance (CAD) in a semiarid grassland and a tropical dry forest. 
The file contains two sections, one for each vegetation type. All data correspond to abundances, except column labeled CAD.

Semiarid grassland
The semiarid grassland is in Concepción Buenavista, Oaxaca, southern Mexico, at an elevation of 2275 m a.s.l. Annual precipitation is 530·3 mm, and mean temperature is 16·3 °C. Data come from 21 0·5 ha sites. In each site, eight 1 × 1 m quadrats were randomly chosen, and in each one we randomly selected 20 0·1 × 0·1 m squares. In the latter, we quantified the abundance of all vascular plants.

Tropical dry forest
The tropical dry forest is located in La Cañada, Oaxaca. Its elevation ranges from 580 m a.s.l. to 850 m a.s.l. Precipitation ranges from 473 to 515 mm in annual precipitation and mean temperature ranges from 25·2 to 26·2 °C.Data comprise vascular plant abundances for 38 sites with 3 transects each, measuring 50 × 10 m for trees and 50 × 4 m for shrubs and small succulents. 

Chronic anthropogenic disturbance
The chronic anthropogenic disturbance (CAD) index is based on 14 metrics that measure disturbance values for human activities, livestock, and land degradation, the sum of which provides an estimate of total CAD. The index runs from zero in pristine sites to slightly over 100 in extremely degraded communities where even soil has been almost completely lost. Metrics for human activities comprise fuelwood extraction, human trails density, human trail surface, settlement proximity, contiguity to activity cores, land use and wildfires. Metrics for livestock raising comprise goat droppings, cattle droppings, browsing, livestock trail density and soil compaction. Finally, land degradations metrics comprise erosion, presence of soil islands and totally modified surfaces. Each metric was measured in 3 different transects and averaged to obtain a single value for each site. See Martorell and Peters (2005, 2008) for more details.
DOI: 10.5061/dryad.6vr0666/1
title: Isotopic data humidMed site

description: Isotopic data (leaf d13C, xylem d18O) form humidMed site at both spring and summer sampling dates
DOI: 10.5061/dryad.6vr0666/2
title: Isotopic data from semiaridMed site

description: Isotopic data (leaf d13C, xylem d18O) form semi-aridMed site at both spring and summer sampling dates
DOI: 10.5061/dryad.6vr0666/3
title: Reflectance data from humidMed site

description: Summer (dry season) reflectance index data (WI, CHL, PRI) from humidMed site
DOI: 10.5061/dryad.8qr6qf4/1
title: Host-plant dissections reveal contrasting distributions of Crematogaster ants and their symbionts in two myrmecophytic Macaranga species

description: Here we compared two myrmecophytic systems, Macaranga trachyphylla with Crematogaster captiosa (Mt+Cc) and M. beccariana with C. decamera (Mb+Cd), using a fine-scale dissection of the stems. For the two plant species, for each internode we recorded both contents (ants, coccids, refuse piles) and structure (internode height, numbers of open and occluded ant holes)
DOI: 10.5061/dryad.9c7s3.3
title: Data from: Reduced snow cover increases wintertime nitrous oxide (N2O) emissions from an agricultural soil in the upper U.S. Midwest
DOI: 10.5061/dryad.9c7s3.3/1.3
title: dataset_winter_n2o

description: Contains data on historical winter weather for Kellogg Biological Station and snowfall record, soil temperature, daily nitrous oxide flux, cumulative nitrous oxide flux, soil inorganic nitrogen and soil aggregates under three snow manipulation treatments over winters 2011-2013.
DOI: 10.5061/dryad.df2jt/1
title: Geneset of the Sericostoma genome assembly

description: Genes were predicted using ab initio and homology-based approaches. Augustus was used for ab initio predictions. For the homology-based approach, protein datasets from related species (Acyrthosiphon pisum, Camponotus floridanus, Nasonia vitripennis, Bombyx mori, and Tribolium castaneum) were aligned to the draft genome assemblies using BLASTp (cutoff: 10-5), and gene models were generated by GeneWise. A consensus gene set that merged ab initio and homology-based predictions was created using GLEAN. 

The three resulting data files contain a table with summary information per predicted gene (Sericostoma_personatum_gapClosed.gene.gff), the predicted mRNA sequences  (Sericostoma_personatum_gapClosed.gene.cds) and the predicted protein sequences ( Sericostoma_personatum_gapClosed.gene.pep).
DOI: 10.5061/dryad.df2jt/2
title: Functional annotation of the Sericostoma genome assembly

description: Gene functions were assigned to the Geneset using BLASTp (cutoff: 10-5) against KEGG (release 58), non-redundant protein sequences (NCBI release 20150222), Swiss-Prot, and TrEMBL (Uniprot release 201203). Conserved protein domains were assessed by InterPro and InterProScan. Separate files are provided for each database.
DOI: 10.5061/dryad.ft01tp8/1
title: Sottas_et_al_JEB_Data.xlsx

description: A XLSX spreadsheet containing data on morphology and habitat of Common Nightingale (Luscinia megarhynchos) and Thrush Nightingale (Luscinia luscinia) in the sympatric zone.
DOI: 10.5061/dryad.g1hf29c/1
title: Duckling sex ratio

description: This data file contains the duckling sex ratio of individually known female eiders during 2005-2013.
DOI: 10.5061/dryad.gq224h3/1
title: Ladybeetle Functional Responses

description: This dataset contains information on published ladybeetle functional responses, including predator and prey species, temperature, arena size, and functional response parameters.
DOI: 10.5061/dryad.j3528bt/1
title: Scenario1

description: Scenario1.rar contains 100 tree data generated under Scenario 1 as mentioned in the paper.
DOI: 10.5061/dryad.j3528bt/2
title: Scenario3

description: Scenario3.rar contains 100 tree data generated under Scenario 3 as mentioned in the paper.
DOI: 10.5061/dryad.j3528bt/3
title: Scenario4

description: Scenario4.rar contains 100 tree data generated under Scenario 4 as mentioned in the paper.
DOI: 10.5061/dryad.j3528bt/4
title: Scenario5

description: Scenario5.rar contains 100 tree data generated under Scenario 5 as mentioned in the paper.
DOI: 10.5061/dryad.j3528bt/5
title: Scenario2

description: Scenario2.rar contains 100 tree data generated under Scenario 2 as mentioned in the paper.
DOI: 10.5061/dryad.m6dn0g8/1
title: Collembola_trait_data

description: Trait values of Collembola species
DOI: 10.5061/dryad.m6dn0g8/2
title: Gastropod_trait_data

description: Trait values for gastropod species
DOI: 10.5061/dryad.nv1sv/6
title: Mitochondrial genome annotation Amphiprion frenatus

description: Mitochondrial genome annotation for Amphiprion frenatus, in csv format. MitoAnnotator and MitoFish were used to obtain the mitochondrial genome annotation. For more information, please refer to the publication
DOI: 10.5061/dryad.pg632hc/1
title: Zytynska et al. Bolitophagus data

description: Bolitophagus reticulatus beetles were collected from Fomes fomentarius fungal bodies, in the ‘Steigerwald’ forest area in southern Germany (Bavaria) (N 49° 50' 53 E 10° 29' 41), 2014-2015, across the three different scales (within-fungi, within-tree, and among trees). Data gives geographic location, tree and fungi ID and the multi-locus genotype of each beetles as identified from 17 newly-developed microsatellite loci.
DOI: 10.5061/dryad.q4f4ns6/10
title: Monte Carlo Simulation Study and Sample Size Comparison

description: R code for conducting Monte Carlo simulation study.
DOI: 10.5061/dryad.q4f4ns6/11
title: Bhattacharyya Distance

description: R code for calculating Bhattacharyya Distance.
DOI: 10.5061/dryad.q4f4ns6/3
title: spot_trawl

description: Data used for estimating Spot diet using the spatial and non-spatial estimators.
DOI: 10.5061/dryad.q4f4ns6/4
title: Creating S Predict Grids

description: R code for generating s
DOI: 10.5061/dryad.q4f4ns6/5
title: Cross Validation using Grid Search

description: R code for cross validation using manual grid search
DOI: 10.5061/dryad.q4f4ns6/6
title: Cross Validation using Optimization

description: R code for cross validation using an optimization routine.
DOI: 10.5061/dryad.q4f4ns6/7
title: Data Simulation

description: R code for simulating predator diet data.
DOI: 10.5061/dryad.q4f4ns6/8
title: Estimating Diet using NonSpatial Estimator

description: R code for estimating predator diet composition using the nonspatial estimator.
DOI: 10.5061/dryad.q4f4ns6/9
title: Estimating Diet using Spatial Estimator (SDKE)

description: R code for estimating predator diet composition using the spatial estimator.
DOI: 10.5061/dryad.q4g75/13
title: Expression Counts Table

description: Table of reads per transcript per population sample library as computed using HTSeq.
DOI: 10.5061/dryad.q4g75/14
title: Protein Annotations

description: List of protein annotations per assembled transcript. Annotations were generated using the Blast+ software package. Using a custom Blast database constructed from Human, Mammalian and Vertebrate Blast databases.
DOI: 10.5061/dryad.q4g75/15
title: R. temporaria Final_Denovo Assembly

description: Final denovo transcriptome assembly. Assembly incorporates all 6 populations and was constructed using TransAbyss.
DOI: 10.5061/dryad.q4g75/16
title: Bacterial Read Classification Counts Table

description: Table of number of removed reads that mapped to individual bacterial species per sample population library. Read classification was performed using the Kraken classification program.
DOI: 10.5061/dryad.sc30g/1
title: Data on nest sizes of blue tits in Wytham Woods 2001-2003

description: Nest sizes recorded by SCG in Wytham Woods, UK 2001-2003. Nest sizes were recorded as fraction of standardised nest box filled. Blue tits were identified using uniquely marked metal rings to give identities. Zone is the woodland compartment in Wytham Woods where the nest is.
DOI: 10.5061/dryad.sc30g/2
title: Nest sizes of daughters and their genetic mothers

description: Nest sizes (recorded as fraction of standardised nest box filled) of blue tit daughters and their genetic mothers, as recorded by SCG in Wytham Woods, Oxfordshire, UK in 2001-2003
DOI: 10.17632/dhnvj4xs5d.2
title: Antisense transcription-dependent chromatin signature modulates sense transcription and transcript dynamics

description: RNA FISH images
DOI: 10.17632/z2f5d88479.1
title: Data for: Impact of Volunteering on Cognitive Decline of the Elderly

description: Stata data file.
DOI: 10.5061/dryad.121gg5f/1
title: Sandbag Propagation data for Giant Cane

description: Data file is excel file having emergence and survival data of giant cane in sand bag propagation method. The excel file also contains soil moisture data of the sandbags. Please refer the materials and methods section and graphs for reading the treatment name.
DOI: 10.5061/dryad.20bv259/1
title: Reversal Learning and Snow Cover Data
DOI: 10.5061/dryad.28sm8/1
title: Cribriform plate (CP) size varies markedly across mammal species.

description: Cribriform morphology variation seen within transparent 3D models of four mammals species. Models constructed with Mimics and 3-matics software from high-resolution CT scans..  (a,b), Lateral views. (a), Nine-banded armadillo (Dasypus novemcinctus) skull. (b), Gorilla (Gorilla gorilla).   (c-f), Dorsoposterior views. (c) Armadillo.  (d), Dog (Canis familiaris, saluki breed).  (e), Little brown bat (Myotis lucifugus).  (f), Gorilla.  Red: cribriform plate (CP). Green: Turbinal bones (Ethmoid, frontal, and nasal) and partial nasal septum are only clearly viewable in lateral views).