cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48597/8g93-55gr
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/8qz2-npvm
title: Measurement of Nitrogen_dioxide at Birkenes

description: Measurement of Nitrogen_dioxide at Birkenes
DOI: 10.48597/96z7-hvdf
title: Measurement of Sulphur_dioxide at Birkenes

description: Measurement of Sulphur_dioxide at Birkenes
DOI: 10.6084/m9.figshare.7325555
title: Additional file 4: of Can-SINE dynamics in the giant panda and three other Caniformia genomes

description: The genomes information. (XLSX 10 kb)
DOI: 10.48597/9pdu-mcub
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/aumz-bhur
title: Measurement of Nitrogen_dioxide at Birkenes

description: Measurement of Nitrogen_dioxide at Birkenes
DOI: 10.5281/zenodo.10734060
title: HvADH2 in 0.15M ionic liquid [Me3S]+[I]-
DOI: 10.5281/zenodo.10734061
title: HvADH2 in 0.15M ionic liquid [Me3S]+[I]-
DOI: 10.6084/m9.figshare.7325555.v1
title: Additional file 4: of Can-SINE dynamics in the giant panda and three other Caniformia genomes

description: The genomes information. (XLSX 10 kb)
DOI: 10.48597/bech-vwuh
title: Measurement of Sulphur_dioxide at Birkenes

description: Measurement of Sulphur_dioxide at Birkenes
DOI: 10.48597/bhz6-ppj8
title: Measurement of Ammonium at Birkenes

description: Measurement of Ammonium at Birkenes
DOI: 10.48597/bmyz-m3fz
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/bs2y-s55g
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/bzjw-5ymu
title: Measurement of Sulphate_total at Birkenes

description: Measurement of Sulphate_total at Birkenes
DOI: 10.48597/d3pf-ybgn
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/ehjj-r3j9
title: Measurement of Sulphate_total at Birkenes

description: Measurement of Sulphate_total at Birkenes
DOI: 10.6084/m9.figshare.7325561
title: Additional file 5: of Can-SINE dynamics in the giant panda and three other Caniformia genomes

description: The sample information for the PPS SINE PCR validation panel. (XLSX 9 kb)
DOI: 10.48597/envg-3pgv
title: Measurement of Ammonium at Birkenes

description: Measurement of Ammonium at Birkenes
DOI: 10.6084/m9.figshare.7325561.v1
title: Additional file 5: of Can-SINE dynamics in the giant panda and three other Caniformia genomes

description: The sample information for the PPS SINE PCR validation panel. (XLSX 9 kb)
DOI: 10.48597/ez7q-u6pc
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/f4ut-5rvu
title: Measurement of Sulphate_total at Birkenes

description: Measurement of Sulphate_total at Birkenes
DOI: 10.48597/fj5r-gh9c
title: Measurement of Ammonium at Birkenes

description: Measurement of Ammonium at Birkenes
DOI: 10.48597/fz7r-c2mj
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/g28f-nzs7
title: Measurement of Sum_nitric_acid_and_nitrate at Birkenes

description: Measurement of Sum_nitric_acid_and_nitrate at Birkenes
DOI: 10.48597/g344-kjeb
title: Measurement of Ammonium at Birkenes

description: Measurement of Ammonium at Birkenes
DOI: 10.48597/g3ce-abqv
title: Measurement of Sum_nitric_acid_and_nitrate at Birkenes

description: Measurement of Sum_nitric_acid_and_nitrate at Birkenes
DOI: 10.48597/g53w-5fa2
title: Measurement of Sum_nitric_acid_and_nitrate at Birkenes

description: Measurement of Sum_nitric_acid_and_nitrate at Birkenes
DOI: 10.48597/gat5-w3ku
title: Measurement of Nitrogen_dioxide at Birkenes

description: Measurement of Nitrogen_dioxide at Birkenes
DOI: 10.48597/gchj-yxcf
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/gjpx-fm9s
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/gppe-3beh
title: Measurement of Sulphur_dioxide at Birkenes

description: Measurement of Sulphur_dioxide at Birkenes
DOI: 10.48597/gwt6-b6xu
title: Measurement of Sum_nitric_acid_and_nitrate at Birkenes

description: Measurement of Sum_nitric_acid_and_nitrate at Birkenes
DOI: 10.48597/h95x-jykv
title: Measurement of Ammonium at Birkenes

description: Measurement of Ammonium at Birkenes
DOI: 10.48597/henn-5nef
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/hfav-t9ba
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/hfy6-f4c2
title: Measurement of Sulphate_total at Birkenes

description: Measurement of Sulphate_total at Birkenes
DOI: 10.48597/hw44-ua86
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/jg7t-a8mt
title: Measurement of Sum_nitric_acid_and_nitrate at Birkenes

description: Measurement of Sum_nitric_acid_and_nitrate at Birkenes
DOI: 10.48597/k2cz-db44
title: Measurement of Nitrogen_dioxide at Birkenes

description: Measurement of Nitrogen_dioxide at Birkenes
DOI: 10.48597/kr4t-s6y6
title: Measurement of Sulphate_total at Birkenes

description: Measurement of Sulphate_total at Birkenes
DOI: 10.48597/map5-4arv
title: Measurement of Nitrogen_dioxide at Birkenes

description: Measurement of Nitrogen_dioxide at Birkenes
DOI: 10.48597/mjce-h5et
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/mraj-psap
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/ms4b-4qyt
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/ncwm-pxud
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/njze-2fn7
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/pftr-fshy
title: Measurement of Nitric_acid at Birkenes

description: Measurement of Nitric_acid at Birkenes
DOI: 10.48597/pk87-qdnc
title: Measurement of Sulphur_dioxide at Birkenes

description: Measurement of Sulphur_dioxide at Birkenes
DOI: 10.48597/qa4p-aqrg
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/qjg3-fvzq
title: Measurement of Sum_nitric_acid_and_nitrate at Birkenes

description: Measurement of Sum_nitric_acid_and_nitrate at Birkenes
DOI: 10.48597/r593-rkg6
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/r7tp-t5kj
title: Measurement of Sum_nitric_acid_and_nitrate at Birkenes

description: Measurement of Sum_nitric_acid_and_nitrate at Birkenes
DOI: 10.6084/m9.figshare.2082700
title: A Concave Pairwise Fusion Approach to Subgroup Analysis

description: An important step in developing individualized treatment strategies is correct identification of subgroups of a heterogeneous population to allow specific treatment for each subgroup. This article considers the problem using samples drawn from a population consisting of subgroups with different mean values, along with certain covariates. We propose a penalized approach for subgroup analysis based on a regression model, in which heterogeneity is driven by unobserved latent factors and thus can be represented by using subject-specific intercepts. We apply concave penalty functions to pairwise differences of the intercepts. This procedure automatically divides the observations into subgroups. To implement the proposed approach, we develop an alternating direction method of multipliers algorithm with concave penalties and demonstrate its convergence. We also establish the theoretical properties of our proposed estimator and determine the order requirement of the minimal difference of signals between groups to recover them. These results provide a sound basis for making statistical inference in subgroup analysis. Our proposed method is further illustrated by simulation studies and analysis of a Cleveland heart disease dataset. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.7849883
title: Additional file 1: of RnBeads 2.0: comprehensive analysis of DNA methylation data

description: Table S1. Feature comparison table of software tools for DNA methylation analysis. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.7849883.v1
title: Additional file 1: of RnBeads 2.0: comprehensive analysis of DNA methylation data

description: Table S1. Feature comparison table of software tools for DNA methylation analysis. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.14140296
title: Additional file 1 of Time-resolved transcriptional profiling of Trichinella-infected murine myocytes helps to elucidate host–pathogen interactions in the muscle stage

description: Additional file 1: Table S1. Complete DEG lists for each time point.
DOI: 10.6084/m9.figshare.7849892
title: Additional file 2: of RnBeads 2.0: comprehensive analysis of DNA methylation data

description: Table S2. Parameter settings for the benchmarking of DNA methylation analysis tools. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7849892.v1
title: Additional file 2: of RnBeads 2.0: comprehensive analysis of DNA methylation data

description: Table S2. Parameter settings for the benchmarking of DNA methylation analysis tools. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.10000940
title: MOESM5 of Characterization of Cronartium ribicola dsRNAs reveals novel members of the family Totiviridae and viral association with fungal virulence

description: Additional file 5: Table S1. Cronartium ribicola samples collected in the present study. Table S2. Contigs of the Cronartium ribicola transcriptome with significant homologies to Totiviruses revealed by Blastx search. Table S3. Oligonucleotide sequences designed for PCR. Table S4. Open reading frames (ORFs) identified in the C. ribicola viral full-length genomes. Table S5. CDD search of putative C. ribicola Totivirus dsRNA genomes. Table S6. Pfam search of putative C. ribicola Totivirus dsRNA genomes. Table S7. Amino acid sequence identities among putative CrTV proteins and other members of the family Totiviridae.
DOI: 10.6084/m9.figshare.10000940.v1
title: MOESM5 of Characterization of Cronartium ribicola dsRNAs reveals novel members of the family Totiviridae and viral association with fungal virulence

description: Additional file 5: Table S1. Cronartium ribicola samples collected in the present study. Table S2. Contigs of the Cronartium ribicola transcriptome with significant homologies to Totiviruses revealed by Blastx search. Table S3. Oligonucleotide sequences designed for PCR. Table S4. Open reading frames (ORFs) identified in the C. ribicola viral full-length genomes. Table S5. CDD search of putative C. ribicola Totivirus dsRNA genomes. Table S6. Pfam search of putative C. ribicola Totivirus dsRNA genomes. Table S7. Amino acid sequence identities among putative CrTV proteins and other members of the family Totiviridae.
DOI: 10.6084/m9.figshare.5752752
title: Identification and characterization of circular RNAs in the silkworm midgut following <i>Bombyx mori</i> cytoplasmic polyhedrosis virus infection

description: The pathogenesis of <i>Bombyx mori</i> cytoplasmic polyhedrosis virus (BmCPV) infection is unclear, although accumulating evidence indicates that circular RNAs (circRNAs), which act as competing endogenous RNAs or positive regulators, play important roles in regulating gene expression in eukaryotes and, thus, may play a role in BmCPV infections. To explore the expression and biological functions of circRNAs in the silkworm midgut following BmCPV infection, silkworm circRNA expression profiles of normal midgut tissue (control) and BmCPV-infected midgut tissue (test) were determined using high-through sequencing. A total of 9,753 and 7,475circRNAs were detected from the control and test samples, respectively. The two samples shared 6,085 circRNAs, while 646 and 737 circRNAs were expressed specifically in the control and test samples, respectively. A total of 3,638 circRNAs were shown to be differentially expressed, and 400 circRNAs were substantially differentially expressed with a fold-change ≥ 2.0 (<i>p</i>&lt; 0.05 and a false discover rate &lt; 0.05), of which 294 were up-regulated and 106 were down-regulated following infection. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses were conducted to determine the principal functions of the substantially differentially regulated genes. circRNA-miRNA interaction networks were constructed based on a correlation analysis between the differentially expressed circRNAs and the nature of their microRNA (miRNA) binding sites. The network inferred that 13 miRNAs interacting with 193 circRNAs were among the 300 most abundant relationships. bmo-miR-3389-5p, bmo-miR-745-3p, and bmo-miR-3262 were related to 30, 34, and 34 circRNAs, respectively. circRNA_8115, circRNA_9444, circRNA_4553, circRNA_0827, and circRNA_6649 contained six, five, four, four, and four miRNA binding sites, respectively. We further found that alternative circularization of circRNAs is a common feature in silkworms and that the junction sites of many silkworm circRNAs are flanked by canonical GT/AG splicing signals. Our study is the first to show the circRNA response to virus infection. Thus, it provides a novel perspective on circRNA-miRNA interactions during BmCPV pathogenesis, and it lays the foundation for future research of the potential roles of circRNAs in BmCPV pathogenesis.
DOI: 10.6084/m9.figshare.5752752.v1
title: Identification and characterization of circular RNAs in the silkworm midgut following <i>Bombyx mori</i> cytoplasmic polyhedrosis virus infection

description: The pathogenesis of <i>Bombyx mori</i> cytoplasmic polyhedrosis virus (BmCPV) infection is unclear, although accumulating evidence indicates that circular RNAs (circRNAs), which act as competing endogenous RNAs or positive regulators, play important roles in regulating gene expression in eukaryotes and, thus, may play a role in BmCPV infections. To explore the expression and biological functions of circRNAs in the silkworm midgut following BmCPV infection, silkworm circRNA expression profiles of normal midgut tissue (control) and BmCPV-infected midgut tissue (test) were determined using high-through sequencing. A total of 9,753 and 7,475circRNAs were detected from the control and test samples, respectively. The two samples shared 6,085 circRNAs, while 646 and 737 circRNAs were expressed specifically in the control and test samples, respectively. A total of 3,638 circRNAs were shown to be differentially expressed, and 400 circRNAs were substantially differentially expressed with a fold-change ≥ 2.0 (<i>p</i>&lt; 0.05 and a false discover rate &lt; 0.05), of which 294 were up-regulated and 106 were down-regulated following infection. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses were conducted to determine the principal functions of the substantially differentially regulated genes. circRNA-miRNA interaction networks were constructed based on a correlation analysis between the differentially expressed circRNAs and the nature of their microRNA (miRNA) binding sites. The network inferred that 13 miRNAs interacting with 193 circRNAs were among the 300 most abundant relationships. bmo-miR-3389-5p, bmo-miR-745-3p, and bmo-miR-3262 were related to 30, 34, and 34 circRNAs, respectively. circRNA_8115, circRNA_9444, circRNA_4553, circRNA_0827, and circRNA_6649 contained six, five, four, four, and four miRNA binding sites, respectively. We further found that alternative circularization of circRNAs is a common feature in silkworms and that the junction sites of many silkworm circRNAs are flanked by canonical GT/AG splicing signals. Our study is the first to show the circRNA response to virus infection. Thus, it provides a novel perspective on circRNA-miRNA interactions during BmCPV pathogenesis, and it lays the foundation for future research of the potential roles of circRNAs in BmCPV pathogenesis.
DOI: 10.6084/m9.figshare.2082748
title: Estimation of Directed Acyclic Graphs Through Two-Stage Adaptive Lasso for Gene Network Inference

description: Graphical models are a popular approach to find dependence and conditional independence relationships between gene expressions. Directed acyclic graphs (DAGs) are a special class of directed graphical models, where all the edges are directed edges and contain no directed cycles. <i>The DAGs are well known models for discovering causal relationships between genes in gene regulatory networks.</i> However, estimating DAGs without assuming known ordering is challenging due to high dimensionality, the acyclic constraints, and the presence of equivalence class from observational data. To overcome these challenges, we propose a two-stage adaptive Lasso approach, called NS-DIST, which performs neighborhood selection (NS) in stage 1, and then estimates DAGs by the discrete improving search with Tabu (DIST) algorithm within the selected neighborhood. Simulation studies are presented to demonstrate the effectiveness of the method and its computational efficiency. Two real data examples are used to demonstrate the practical usage of our method for gene regulatory network inference. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.25328581
title: 23468.syri.out

description: Output file of running SyRI software comparing Fusarium graminearum genome assemblies from KSU 23468 against PH-1 reference.
DOI: 10.6084/m9.figshare.25328581.v1
title: 23468.syri.out

description: Output file of running SyRI software comparing Fusarium graminearum genome assemblies from KSU 23468 against PH-1 reference.
DOI: 10.6084/m9.figshare.7849988
title: Additional file 2: of Similarities and differences between variants called with human reference genome HG19 or HG38

description: Supplemental tables. (ZIP 633 kb)
DOI: 10.15139/s3/dlac9x
title: Completing the picture of traffic injuries: Understanding data needs and opportunities for road safety [R4]

description: Police-recorded crash data has improved over time, but still fails to report all aspects of crashes that are important to developing a full understanding of crash mechanisms, injury burdens, pre-crash conditions, and ultimately total health and cost outcomes. Traditionally, safety and injury analysis has occurred in siloed fields, with road safety researchers relying predominately on police-recorded crash reports, and public health researchers relying on hospitalization records. Depending on the context of the study and the database used, findings vary. This is the case for the micro-level (e.g., injury severity of an individual) to the macro-level (e.g., injury rate) scale. This project begins to map disparate data sets to inform questions surrounding crashes. The data-mapping process will aim to build linkages between police-crash datasets and other datasets (i.e., incident-oriented data, spatial data, emerging datasets) and scale it up to larger geographic areas. Efforts to augment crash data are not new. A notable health-oriented example which sought to link health and police records was the Crash Outcome Data Evaluation System (CODES). Although this federal program ended in 2013, some states, including California, North Carolina, and Tennessee, have continued this effort. Added data and analytics resulted in a more “complete picture” of crashes and injuries. This complete picture enables researchers to improve their modeling, assist policy makers, and contribute to visualization that helps tell compelling safety stories that guide safety improvements.
DOI: 10.6084/m9.figshare.7850018
title: Additional file 1: of Transcriptome profiling analysis reveals that CXCL2 is involved in anlotinib resistance in human lung cancer cells

description: This file includes the mRNA levels of anlotinib-responsive 769 genes in NCI-H1975 cells, anlotinib resistant NCI-H1975 cells, and their anlotinib-treated cells. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.7850018.v1
title: Additional file 1: of Transcriptome profiling analysis reveals that CXCL2 is involved in anlotinib resistance in human lung cancer cells

description: This file includes the mRNA levels of anlotinib-responsive 769 genes in NCI-H1975 cells, anlotinib resistant NCI-H1975 cells, and their anlotinib-treated cells. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.7850021
title: Additional file 2: of Transcriptome profiling analysis reveals that CXCL2 is involved in anlotinib resistance in human lung cancer cells

description: This file includes the mRNA levels of anlotinib resistance-related 127 genes in NCI-H1975 cells, anlotinib resistant NCI-H1975 cells, and their anlotinib-treated cells. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.25328578
title: Experimental discharge voltage profiles of disordered rocksalt cathodes

description: An open-source dataset of disordered rocksalt cathode electrochemical discharge voltages.
DOI: 10.48597/r8hf-9psy
title: Measurement of Nitrogen_dioxide at Birkenes

description: Measurement of Nitrogen_dioxide at Birkenes
DOI: 10.48597/r9cc-959f
title: Measurement of Ammonium at Birkenes

description: Measurement of Ammonium at Birkenes
DOI: 10.48597/rqwc-snty
title: Measurement of Nitrogen_dioxide at Birkenes

description: Measurement of Nitrogen_dioxide at Birkenes
DOI: 10.48597/s5er-z5hb
title: Measurement of Ammonium at Birkenes

description: Measurement of Ammonium at Birkenes
DOI: 10.15139/s3/8uqu7t
title: Structures of stakeholder relationships in making road safety decisions [R1]

description: Key project goals and objectives: • Discover those organizations and actors involved in influencing the safety of cities’ transportation systems • Reveal which individuals and organizations should be involved in influencing the safety of a city’s transportation systems, but is not involved • Describe how organizations and actors make transportation safety decisions • Discern the quality of final transportation safety decisions in terms of process (e.g., equitable distribution of funding, limitations of categorical funding guidelines, access to decision-makers) and outcome efficacy (e.g., selected countermeasures’ safety effectiveness)
DOI: 10.48597/shye-vtzf
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/smnz-jhnm
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/srgr-2ay7
title: Measurement of Nitrogen_dioxide at Birkenes

description: Measurement of Nitrogen_dioxide at Birkenes
DOI: 10.48597/te23-gpjy
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes
DOI: 10.48597/tyhk-mp4b
title: Measurement of Inorganics in air and particle phase at Birkenes

description: Measurement of Inorganics in air and particle phase at Birkenes