cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.62j8zk
title: Occurrence Download

description: A dataset containing 447278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-02-06",
 "EventDate is less than or equal to 2024-03-07",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 447278 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088382-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.begwwe
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pulmonaria cesatiana (Fenzl & Friedr.) Selvi, Bigazzi, Hilger & Papini"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088683-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r28eq8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cardamine heptaphylla (L.) O.E.Schulz",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088685-240321170329656/datasets/export for details.
DOI: 10.15468/dl.tg7bev
title: Occurrence Download

description: A dataset containing 621 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pteris cadieri Christ"
 ]
}

 The dataset includes 621 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088684-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xvcjcx
title: Occurrence Download

description: A dataset containing 12512 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pica pica (Linnaeus, 1758)"
 ]
}

 The dataset includes 12512 records from 176 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088682-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybm6eh
title: Occurrence Download

description: A dataset containing 731 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Reseda decursiva Forssk."
 ]
}

 The dataset includes 731 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088687-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tr3vuj
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psychotria distinctinervia A.P.Davis & Govaerts"
 ]
}

 The dataset includes 57 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088688-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.he8v2c
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhodiola rosea L.",
 "Country is China",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 65 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088691-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pfj56y
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculus incisurifer (Julin) Ericsson"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088690-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vbxd5z
title: Occurrence Download

description: A dataset containing 2147 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potentilla cryptotaeniae Maxim."
 ]
}

 The dataset includes 2147 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088689-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25530333
title: Additional file 1 of Immune cell infiltration and drug response in glioblastoma multiforme: insights from oxidative stress-related genes

description: Additional file 1: Figure 1. The flowchart for the study. Figure 2. Consensus clustering analysis of differentially expressed ORGs. A Consensus clustering identified three relevant isoforms of ORGs. B–D Heat maps display the normalized enrichment scores for ORGs across these subtypes. E–G PCA, tSNE and UAMP analyses. Figure 3. Analysis of drug sensitivity. A–I Relationship between sensitivity and risk score for nine drugs. Table S1. GBM Differential Gene List.
DOI: 10.15468/dl.dq4uq5
title: Occurrence Download

description: A dataset containing 1418 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((176.46426 -59.70509,178.30844 -24.43529,154.79524 7.14617,122.52222 35.2698,67.8886 38.4971,71.34643 16.36703,70.88538 3.2273,118.83387 -57.86091,176.46426 -59.70509))",
 "TaxonKey is Fagopyrum esculentum Moench"
 ]
}

 The dataset includes 1418 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088686-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6y5fa7
title: Occurrence Download

description: A dataset containing 14556649 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "PublishingOrg is one of (e2e717bf-551a-4917-bdc9-4fa0f342c530)"
 ]
}

 The dataset includes 14556649 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088396-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dw2dpj
title: Occurrence Download

description: A dataset containing 269 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pulmonaria collina W.Sauer"
 ]
}

 The dataset includes 269 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088693-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrgje5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cardamine hirsuta L.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088694-240321170329656/datasets/export for details.
DOI: 10.15468/dl.ad5uxa
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pteris calocarpa (Copel.) M.G.Price"
 ]
}

 The dataset includes 11 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088696-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ehkd7a
title: Occurrence Download

description: A dataset containing 7992 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Equus asinus Linnaeus, 1758"
 ]
}

 The dataset includes 7992 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088698-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ksu5ug
title: Occurrence Download

description: A dataset containing 25860 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eliomys quercinus (Linnaeus, 1766)"
 ]
}

 The dataset includes 25860 records from 474 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088697-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2hg5z4
title: CCDC 2307546: Experimental Crystal Structure Determination

description: Related Article: Peipei Zhang, Jinhao Zhang, Shu Bu, Xin Huang, Lili Shi, Longjiu Cheng, Jichuan Zhang, Kun Wang|2024|J.Phys.Chem.C|128|2240|doi:10.1021/acs.jpcc.3c07821
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hg606
title: CCDC 2307547: Experimental Crystal Structure Determination

description: Related Article: Peipei Zhang, Jinhao Zhang, Shu Bu, Xin Huang, Lili Shi, Longjiu Cheng, Jichuan Zhang, Kun Wang|2024|J.Phys.Chem.C|128|2240|doi:10.1021/acs.jpcc.3c07821
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.19695882
title: Additional file 2 of Construction of a lncRNA-associated competing endogenous RNA regulatory network after traumatic brain injury in mouse

description: Additional file 2. The list of DElncRNAs and DEmRNAs.
DOI: 10.6084/m9.figshare.19695882.v1
title: Additional file 2 of Construction of a lncRNA-associated competing endogenous RNA regulatory network after traumatic brain injury in mouse

description: Additional file 2. The list of DElncRNAs and DEmRNAs.
DOI: 10.6084/m9.figshare.19695903
title: Additional file 1 of High MICAL-L2 expression and its role in the prognosis of colon adenocarcinoma

description: Additional file 1: Figure S1. Network of co-expressed genes of MICAL-L2.
DOI: 10.6084/m9.figshare.19695903.v1
title: Additional file 1 of High MICAL-L2 expression and its role in the prognosis of colon adenocarcinoma

description: Additional file 1: Figure S1. Network of co-expressed genes of MICAL-L2.
DOI: 10.6084/m9.figshare.19695960
title: Additional file 1 of ncRNAs-mediated high expression of TIMM8A correlates with poor prognosis and act as an oncogene in breast cancer

description: Additional file 1: Table S1 High expressed pathways in the result of Gene set enrichment analysis (GSEA). Table S2 Low expressed pathways in the result of Gene set enrichment analysis (GSEA). Table S3 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis and Gene Ontology (GO) annotations of TIMM8A associated proteins. Table S4 The potential upstream miRNAs of TIMM8A. Table S5 The candidate circRNAs for hsa-miR-34c-5p. Table S6 The candidate circRNAs for hsa-miR-449a.
DOI: 10.6084/m9.figshare.19695960.v1
title: Additional file 1 of ncRNAs-mediated high expression of TIMM8A correlates with poor prognosis and act as an oncogene in breast cancer

description: Additional file 1: Table S1 High expressed pathways in the result of Gene set enrichment analysis (GSEA). Table S2 Low expressed pathways in the result of Gene set enrichment analysis (GSEA). Table S3 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis and Gene Ontology (GO) annotations of TIMM8A associated proteins. Table S4 The potential upstream miRNAs of TIMM8A. Table S5 The candidate circRNAs for hsa-miR-34c-5p. Table S6 The candidate circRNAs for hsa-miR-449a.
DOI: 10.6084/m9.figshare.19695939.v1
title: Additional file 3 of Single-cell transcriptomic and chromatin accessibility analyses of dairy cattle peripheral blood mononuclear cells and their responses to lipopolysaccharide

description: Additional file 3: Table S10. Differentially expressed genes with each cell cluster between CO and T1 identified by edgeR. Table S11. Differentially expressed genes with each cell cluster between CO and T2 identified by edgeR. Table S12. Differentially expressed genes with each cell cluster between CO and T3 identified by edgeR. Table S13. Differentially expressed genes with each cell cluster between T1 and T2 identified by edgeR. Table S14. Differentially expressed genes with each cell cluster between T1 and T3 identified by edgeR. Table S15. Differentially expressed genes with each cell cluster between T2 and T3 identified by edgeR. Table S16. Human and cattle PBMC cell type annotation under three resolutions using Azimuth.
DOI: 10.6084/m9.figshare.19695936
title: Additional file 2 of Single-cell transcriptomic and chromatin accessibility analyses of dairy cattle peripheral blood mononuclear cells and their responses to lipopolysaccharide

description: Additional file 2: Table S1. Summary of scRNA-seq and scATAC-seq dataset. Table S2. Marker genes of each cell type. Table S3. Cattle PBMC cell type annotation under three resolutions using Azimuth. Table S4. Cattle PBMC cell type annotation using SingleR. Table S5. The expression of 93 cell cycle-related genes in each cell. Table S6. The summary information of TF identified by SCENIC. Table S7. Single cell’s pseudotime value obtained from Monocle2. Table S8. Gene list of each module identified by WGCNA. Table S9. Enrichment results of each module identified by WGCNA.
DOI: 10.6084/m9.figshare.19695936.v1
title: Additional file 2 of Single-cell transcriptomic and chromatin accessibility analyses of dairy cattle peripheral blood mononuclear cells and their responses to lipopolysaccharide

description: Additional file 2: Table S1. Summary of scRNA-seq and scATAC-seq dataset. Table S2. Marker genes of each cell type. Table S3. Cattle PBMC cell type annotation under three resolutions using Azimuth. Table S4. Cattle PBMC cell type annotation using SingleR. Table S5. The expression of 93 cell cycle-related genes in each cell. Table S6. The summary information of TF identified by SCENIC. Table S7. Single cell’s pseudotime value obtained from Monocle2. Table S8. Gene list of each module identified by WGCNA. Table S9. Enrichment results of each module identified by WGCNA.
DOI: 10.6084/m9.figshare.19695939
title: Additional file 3 of Single-cell transcriptomic and chromatin accessibility analyses of dairy cattle peripheral blood mononuclear cells and their responses to lipopolysaccharide

description: Additional file 3: Table S10. Differentially expressed genes with each cell cluster between CO and T1 identified by edgeR. Table S11. Differentially expressed genes with each cell cluster between CO and T2 identified by edgeR. Table S12. Differentially expressed genes with each cell cluster between CO and T3 identified by edgeR. Table S13. Differentially expressed genes with each cell cluster between T1 and T2 identified by edgeR. Table S14. Differentially expressed genes with each cell cluster between T1 and T3 identified by edgeR. Table S15. Differentially expressed genes with each cell cluster between T2 and T3 identified by edgeR. Table S16. Human and cattle PBMC cell type annotation under three resolutions using Azimuth.
DOI: 10.6084/m9.figshare.16550249
title: A Gaussian Process Emulator Based Approach for Bayesian Calibration of a Functional Input

description: Bayesian calibration of a functional input/parameter to a time-consuming simulator based on a Gaussian process (GP) emulator involves two challenges that distinguish it from other parameter calibration problems. First, one needs to specify a flexible stochastic process prior for the input, and reduce it to a tractable number of random variables. Second, a sequential experiment design criterion that decreases the effect of emulator prediction uncertainty on calibration results is needed and the criterion should be scalable for high-dimensional input and output. In this article, we address these two issues. For the first issue, we employ a GP with a prior density for its correlation parameter as prior for the functional input, and the Karhunen-Loève (KL) expansion of this non-Gaussian stochastic process to reduce its dimension. We show that this prior gives far more robust inference results than a GP with a fixed correlation parameter. For the second issue, we propose the weighted prediction variance (WPV) criterion (with posterior density of the calibration parameter as weight) and prove the consistency of the sequence of emulator-based likelihoods given by the criterion. The proposed method is illustrated with examples on hydraulic transmissivity estimation for groundwater models.
DOI: 10.6084/m9.figshare.16550249.v1
title: A Gaussian Process Emulator Based Approach for Bayesian Calibration of a Functional Input

description: Bayesian calibration of a functional input/parameter to a time-consuming simulator based on a Gaussian process (GP) emulator involves two challenges that distinguish it from other parameter calibration problems. First, one needs to specify a flexible stochastic process prior for the input, and reduce it to a tractable number of random variables. Second, a sequential experiment design criterion that decreases the effect of emulator prediction uncertainty on calibration results is needed and the criterion should be scalable for high-dimensional input and output. In this article, we address these two issues. For the first issue, we employ a GP with a prior density for its correlation parameter as prior for the functional input, and the Karhunen-Loève (KL) expansion of this non-Gaussian stochastic process to reduce its dimension. We show that this prior gives far more robust inference results than a GP with a fixed correlation parameter. For the second issue, we propose the weighted prediction variance (WPV) criterion (with posterior density of the calibration parameter as weight) and prove the consistency of the sequence of emulator-based likelihoods given by the criterion. The proposed method is illustrated with examples on hydraulic transmissivity estimation for groundwater models.
DOI: 10.6084/m9.figshare.20220262
title: Additional file 10 of The role of ZNF143 overexpression in rat liver cell proliferation

description: Additional file 10: TableS3. A list of all DEGs at 48 h and 72 h.
DOI: 10.6084/m9.figshare.20220262.v1
title: Additional file 10 of The role of ZNF143 overexpression in rat liver cell proliferation

description: Additional file 10: TableS3. A list of all DEGs at 48 h and 72 h.
DOI: 10.6084/m9.figshare.20220265
title: Additional file 11 of The role of ZNF143 overexpression in rat liver cell proliferation

description: Additional file 11: TableS4. A list of net_node_gene from Fig. 4A.
DOI: 10.6084/m9.figshare.20220265.v1
title: Additional file 11 of The role of ZNF143 overexpression in rat liver cell proliferation

description: Additional file 11: TableS4. A list of net_node_gene from Fig. 4A.
DOI: 10.6084/m9.figshare.25231577
title: Supplementary Material for: Repetitive DNA mapping in five genera of tree frogs (Amphibia: Anura) from the Atlantic Forest: new highlights on genomic organization in Hylidae

description: Introduction: The tribes Cophomantini, Scinaxini and Dendropsophini are anurans that belong to Hylidae, with wide distribution in tropical and subtropical regions around the world. The taxonomy and systematics of this family remain in a state of ongoing revision. Previous cytogenetic analyses of genera Boana, Bokermannohyla, Ololygon, Scinax and Dendropsophus described some karyotypic characters such as conventional staining, C-banding and NORs, and FISH with specific probes. 
Methods: This study describes for the first time the karyotypes of four species Bokermannohyla ibitipoca, Ololygon luizotavioi, Dendropsophus bipunctatus and Dendropsophus ruschii. Furthermore, we map CA(15) and CAT(10) microsatellite sites and for the aforementioned species and six more species from the same genera, for the insight into the chromosomal evolution within subfamily Hyalinize.
Results: Bok. ibitipoca and O. luizotavioi had 2n= 24 and karyotypic formulae 18m+4sm+2st and 8m+12sm+4st, while D. bipunctatus and D. ruschii showed 2n= 30 and karyotypic formulae 12m+12sm+4st+2t and 10m+10sm+6st+4t, respectively. The diploid numbers and karyotypic formulae revealed here follow the previously reported trend for Hylidae, except Bok. ibitipoca that has a particularity of eight metacentric chromosomes, more than what is commonly found in species of this genus. The microsatellites probes CA(15) and CAT(10) had markings accumulated in blocks in the centromeric, pericentromeric and terminal regions, that were more specific for some species, as well as markings scattered along the chromosomes. We present a comprehensive review table of current data on cytogenetics of these genera.
Conclusion: Our findings showed that the karyotypes of the hylids studied here fit the postulated conserved diploid number and morphological chromosome patterns, while the mapping of these microsatellites enabled us to detect differences between species that share similar chromosomal morphologies.