cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jxjn22
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bajacalifornia burragei Townsend & Nichols, 1925",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038258-241126133413365/datasets/export for details.
DOI: 10.5281/zenodo.12698308
title: Data set for 2024GL112954
DOI: 10.5281/zenodo.12698309
title: Data set for 2024GL111270
DOI: 10.5281/zenodo.14417995
title: Data set for 2024GL112954
DOI: 10.6084/m9.figshare.c.3644420_d6.v1
title: Additional file 4: Table S3. of ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly

description: Targeted regions of cancer gene panel. The genome coordinates are mapped to hg19. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3644420_d4.v1
title: Additional file 1: Table S1. of ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly

description: A list of 138 validated deletions from the literature and 105 previously predicted novel sequence insertions identified by the 1000 Genomes Projects for human NIST standard NA12878. The genome coordinates are mapped to hg19. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3644420_d7.v1
title: Additional file 2: Table S2. of ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly

description: Parameters used for Indel detection tools. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3644423_d3.v1
title: Additional file 1: of Low reproductive skew despite high male-biased operational sex ratio in a glass frog with paternal care

description: Microsatellite genotypes of all adults and tadpoles. (TXT 39Â kb)
DOI: 10.6084/m9.figshare.c.3644438_d4.v1
title: Additional file 4: Table S1. of Integrative DNA methylome analysis of pan-cancer biomarkers in cancer discordant monozygotic twin-pairs

description: Top-ranked results from EWAS of 15 cancer discordant MZ twin-pairs prior to diagnosis. (XLSX 42Â kb)
DOI: 10.15468/dl.6jxg5u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bajacalifornia erimoensis Amaoka & Abe, 1977",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038259-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3644870_d1.v1
title: Additional file 1: of ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB operon in Azospirillum brasilense

description: Original annotation of reclassified proteins as NifO-like by ProClaT. The following list shows how the proteins classified in NifO-like are currently annotated, analyzing complete bacterial genomes. It is worth noting that less than 2Â % of the genes were originally annotated as nifO. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3644867_d2.v1
title: Additional file 2: of Homology modeling and molecular dynamics provide structural insights into tospovirus nucleoprotein

description: The Genbank acession numbers of the viruses used at this work (TABLEDOCX 19 kb)
DOI: 10.6084/m9.figshare.c.3644870_d2.v1
title: Additional file 2: of ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB operon in Azospirillum brasilense

description: List of bacterial species having at least 5 genes nif and the presence of the genes nif, nifO, draT and draG. In the list below are all bacterial species that contain at least five essential nif genes according to ProClaT, analyzing the complete genomes of bacteria. The columns indicate the presence of nifHDK, nifENB, nifO, draT and draG genes. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3644897_d1.v1
title: Additional file 3 of SwitchFinder â   a novel method and query facility for discovering dynamic gene expression patterns

description: Additional file A-H. These files contain the fitting results for the genes from the groups A-H, deduced by SwitchFinder, which represent eight dynamic patterns of the gene expression response to ATRA in neuroblastoma cell line. (ZIP 2457 kb)
DOI: 10.6084/m9.figshare.c.3645122_d1.v1
title: Additional file 1: of The balance between Foxp3 and Ror-Îłt expression in peripheral blood is altered by tocilizumab and abatacept in patients with rheumatoid arthritis

description: The expression levels of master regulator genes and clinical responses to ABT or TCZ. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.c.3645125_d1.v1
title: Additional file 5: of An effective approach for annotation of protein families with low sequence similarity and conserved motifs: identifying GDSL hydrolases across the plant kingdom

description: List of GDSL sequences from lycophyte S. moellendorffii and selected green algae identified here by motif scanning methods. Lists of GDSL sequences from different proteomes are given in separate sheets. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3645125_d2.v1
title: Additional file 4: of An effective approach for annotation of protein families with low sequence similarity and conserved motifs: identifying GDSL hydrolases across the plant kingdom

description: List of sequences from Pfam family PF00657. GDSL lipases are shown in red while sequences missing one or more blocks are in blue. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3645125_d4.v1
title: Additional file 3: of An effective approach for annotation of protein families with low sequence similarity and conserved motifs: identifying GDSL hydrolases across the plant kingdom

description: Revised list of GDSL sequences. Analyses of GDSL sequences from different proteomes are given in separate sheets. In each sheet, table A shows GDSL sequences from the RefSeq proteomes identified in this study; table B shows previously reported GDSL sequences not identified in our study but traced in RefSeq via provided gene loci [9]; and table C shows previously reported GDSL sequences [9] that could not be traced since standard gene identifiers were not provided. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3645125_d7.v1
title: Additional file 6: of An effective approach for annotation of protein families with low sequence similarity and conserved motifs: identifying GDSL hydrolases across the plant kingdom

description: List of GDSL sequences used for the phylogenetic analysis. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3645356_d1.v1
title: MOESM2 of The vaginal microbiome is stable in prepubertal and sexually mature Ellegaard GĂśttingen Minipigs throughout an estrous cycle

description: Additional file 2. Abundance of OTUs at genus level in prepubertal and sexually mature minipigs. This file shows the abundance of genera in prepubertal and sexually mature minipigs. The first spreadsheet contains the data from the prepubertal minipigs and the second spreadsheet contains data from the sexually mature minipigs.
DOI: 10.6084/m9.figshare.c.3645356_d2.v1
title: MOESM1 of The vaginal microbiome is stable in prepubertal and sexually mature Ellegaard GĂśttingen Minipigs throughout an estrous cycle

description: Additional file 1. Abundance of OTUs at family level in individual samples in prepubertal and sexually mature minipigs. This file shows the distribution of bacterial families in the individual samples in prepubertal and sexually mature minipigs to visualize the inter-individual variation. The first spreadsheet contains the data from the prepubertal minipigs and the second spreadsheet contains data from the sexually mature minipigs.
DOI: 10.15468/dl.gfmtgj
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Baldwinella vivanus (Jordan & Swain, 1885)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 68 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038260-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3645371_d1.v1
title: Additional file 1: Figures S1A, S1B, and S1C. of PML-RAR alpha induces the downmodulation of HHEX: a key event responsible for the induction of an angiogenetic response

description: Figure S1A Analysis of HHEX (top panel) and VEGF-A (middle panel) reported in 176 primary AMLs on the TCGA platform. The HHEX/VEGF-A ratio is reported in the bottom panel. Figure S1B Correlation between HHEX and VEGF-A levels observed in 18 primary APLs in the present study (p = 0.0484) and in 16 primary APLs in the TCGA data (p = 0.0284). Figure S1C Correlation between HHEX and VEGF-A levels observed in 18 primary APLs (p = 00484) and in 20 primary M5 AMLs in the TCGA data (p = 0.0174). (ZIP 689 kb)
DOI: 10.6084/m9.figshare.c.3645392_d1.v1
title: Additional file 1: of Mapping areas of spatial-temporal overlap from wildlife tracking data

description: Derivation of biased correlated random walks (BCRW) as implemented in the simulation study. (ZIP 26.5 kb)
DOI: 10.6084/m9.figshare.c.3645593_d2.v1
title: Additional file 2: Figure S2. of A comparative gene analysis with rice identified orthologous group II HKT genes and their association with Na+ concentration in bread wheat

description: DNA Sequence alignment of the OsHKT2;1-OsHKT2;4 intergenic region (A) and TaHKT2;1-TaHKT2;2 intergenic region on 7AL, 7BL and 7DL (B). The complete sequence of PIF/Harbinger type MITE is highlighted in purple, remnants of a CACTA type transposon “DTC_Isidor” in blue and individual motifs of tandem duplications are in red, yellow, green and dark blue. Boxed sequences represent salt activated cis-acting regulatory elements and other regulatory motifs in the OsHKT2;4 and TaHKT2;2 promoter regions. (RTF 545 kb)
DOI: 10.6084/m9.figshare.c.3645596_d3.v1
title: Additional file 3: Table S6. of Genome-wide variation in the pinewood nematode Bursaphelenchus xylophilus and its relationship with pathogenic traits

description: Distribution of proteins obtained by de novo assembly of unmapped reads in the isolates/inbred lines, including Blast2Go annotations. 1: presence/0: absence. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3645611_d2.v1
title: Additional file 2: of CNV analysis in the Lithuanian population

description: Summary of CNVs detected. Also includes CNV annotation results. (XLSX 368Â kb)
DOI: 10.6084/m9.figshare.c.3645620_d2.v1
title: Additional file 3: Table S2. of Molecular Dissection of Seedling Salinity Tolerance in Rice (Oryza sativa L.) Using a High-Density GBS-Based SNP Linkage Map

description: Comparison of 38 SNP calls by GBS and resequencing data. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3645620_d1.v1
title: Additional file 1: Table S1. of Molecular Dissection of Seedling Salinity Tolerance in Rice (Oryza sativa L.) Using a High-Density GBS-Based SNP Linkage Map

description: Order and position of SNP markers in genetic map. (XLSX 234Â kb)
DOI: 10.6084/m9.figshare.c.3645620_d3.v1
title: Additional file 2: Table S3. of Molecular Dissection of Seedling Salinity Tolerance in Rice (Oryza sativa L.) Using a High-Density GBS-Based SNP Linkage Map

description: List of candidate genes contained in QTL intervals. (XLSX 84Â kb)
DOI: 10.6084/m9.figshare.c.3645833_d5.v1
title: Additional file 10: of Functional integration of the circulatory, immune, and respiratory systems in mosquito larvae: pathogen killing in the hemocyte-rich tracheal tufts

description: Data file S1. Fluorescence and optical density (OD) data. (XLSX 91Â kb)
DOI: 10.15468/dl.b5aepj
title: Occurrence Download

description: A dataset containing 1490 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balistes capriscus Gmelin, 1789",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1490 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038261-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3645836_d4.v1
title: Additional file 3: Table S1. of Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

description: Significant SNP markers (FDR
DOI: 10.6084/m9.figshare.c.3645836_d6.v1
title: Additional file 10: Table S3. of Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

description: Significant SNP markers (FDR
DOI: 10.6084/m9.figshare.c.3645836_d10.v1
title: Additional file 4: Table S2. of Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

description: Significant SNP markers (FDR
DOI: 10.6084/m9.figshare.c.3645839_d1.v1
title: Additional file 4: of Genetic and morphological evidence for introgression between three species of willows

description: Q -values with K = 2 (STRUCTURE) and posterior probabilities (NewHybrids). (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3645839_d2.v1
title: Additional file 6: of Genetic and morphological evidence for introgression between three species of willows

description: Morphological characters used to classify species as S. dasyclados, S. schwerinii or S. viminalis. (XLS 25 kb)
DOI: 10.6084/m9.figshare.c.3645839_d4.v1
title: Additional file 1: of Genetic and morphological evidence for introgression between three species of willows

description: Collected samples and classification. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3645839_d5.v1
title: Additional file 2: of Genetic and morphological evidence for introgression between three species of willows

description: H O and H E and test of Hardy-Weinberg equilibrium for every marker for S. schwerinii and S. viminalis separately. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3646016_d2.v1
title: Additional file 1: of Molecular identification of different trypanosome species and subspecies in tsetse flies of northern Nigeria

description: Complete trypanosome prevalence dataset: file â  Isaac_et_al_additional_file_1_complete_trypanosome_prevalence_dataset.txtâ  . (TXT 13 kb)
DOI: 10.6084/m9.figshare.c.3646028_d1.v1
title: MOESM3 of Impact of the Mass Drug Administration for malaria in response to the Ebola outbreak in Sierra Leone

description: Additional file 3. Relative percent change in malaria indicators and Ebola alerts in the health facilities in MDA- (n = 34 PHUs) and non-MDA-chiefdoms (n = 14 PHUs) during post-MDA weeks using interrupted time-series regression. Upper values are relative percent changes and lower values in brackets are 95 % CI. Percentages in bold are significant changes with 95 % CI that excluded zero. Negative changes are decrease and positive changes are increase in trends post-MDA compared to trends of pre-MDA weeks.
DOI: 10.6084/m9.figshare.c.3646040_d1.v1
title: Additional file 3: Table S3. of Adherence and invasive properties of Corynebacterium diphtheriae strains correlates with the predicted membrane-associated and secreted proteome

description: A list of entire predicted proteome for C. diphtheriae using an array of computational programs. (XLSX 1116 kb)
DOI: 10.6084/m9.figshare.c.3646052_d1.v1
title: Additional file 1: of Adaptation of a RAS pathway activation signature from FF to FFPE tissues in colorectal cancer

description: The 18 gene RAS scores, and KRAS/BRAF/NRAS mutation status for 54 CRC samples (15 “bad” samples are in bold; PC1: the first principal component; PC2: the second principal component; 1 = mutation present, 0 = mutation absent; * = score based on 16 genes) (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3646307_d1.v1
title: Additional file 2: of Generalized enrichment analysis improves the detection of adverse drug events from the biomedical literature

description: Overall performance measured on all drug classes and outcomes in OMOP gold standard. Performance is measured for each of the four AE outcomes measured in terms of AUC summarizing all achievable combinations of true positive and false positive rates. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3646304_d2.v1
title: Additional file 2: of Neuroprotective effect of a novel Chinese herbal decoction on cultured neurons and cerebral ischemic rats

description: An excel file containing all the data used for plotting the bar charts. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3646307_d2.v1
title: Additional file 3: of Generalized enrichment analysis improves the detection of adverse drug events from the biomedical literature

description: Adverse event signals for drug classes detected by GEA and PRR. Adverse event signals for drug classes (ATC4 codes) detected by GEA and PRR using different thresholds at different aggregation levels. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3646307_d4.v1
title: Additional file 4: of Generalized enrichment analysis improves the detection of adverse drug events from the biomedical literature

description: Coverage of ADEs in MEDLINE. Coverage of adverse drug events in MEDLINE differs significantly across the four outcomes in OMOP. In particular for “Acute myocardial infarction”, only 16 out of the 33 positive test cases (48 %) were found in our set of candidate drug – adverse event pairs from the literature (at low abstraction). For 17 out of 33 drugs, there was not a single article mentioning a relation between drug and acute MI, and hence no signal could be detected. (XLSX 9 kb)
DOI: 10.15468/dl.f5gbrs
title: Occurrence Download

description: A dataset containing 2411 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prionailurus bengalensis (Kerr, 1792)"
 ]
}

 The dataset includes 2411 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038262-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3646310_d3.v1
title: Additional file 9 of CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data

description: Gene probability distribution for topic 3. Per-topic gene probability distribution for Topic 3 of the hESC data model computed by cellTree. (CSV 3 kb)
DOI: 10.15468/dl.865h42
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathophilus flemingi Aron & McCrery, 1958",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038263-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3646322_d2.v1
title: Additional file 1: of Socioeconomic gradients in the effects of universal school-based health behaviour interventions: a systematic review of intervention studies

description: Full list of studies included (including those which did and dod not examine differential effectsby SES). (RTF 1427 kb)
DOI: 10.6084/m9.figshare.c.3646502_d10.v1
title: Additional file 6: Table S3. of Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

description: All significant associations between the clinical markers and microbes and KEGG modules found in our data. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3646502_d11.v1
title: Additional file 1: Table S1. of Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

description: The clinical markers collected at each time a sample was taken. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3646502_d14.v1
title: Additional file 3: Table S2. of Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

description: Prevalence and relative abundance of microbes and KEGG modules found in both this study and HMP [21]. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3646514_d2.v1
title: Additional file 3: Table S4. of Early transcriptomic response to Fe supply in Fe-deficient tomato plants is strongly influenced by the nature of the chelating agent

description: Functional annotation of differentially expressed transcripts resulted by the comparison of root transcriptional profiles of Fe-deficient plants supplied for 1Â h with Fe-citrate, Fe-PS and Fe-WEHS with root transcriptional profile of Fe-deficient plants. Probe ID, description, species, identity, score, e-value, Uniprot entry and biological GO term were reported. The adjusted p-value and Log2(R) were also reported for each transcript. (XLSX 130Â kb)
DOI: 10.6084/m9.figshare.c.3646526_d2.v1
title: Additional file 2: Figure S1. of GEP analysis validates high risk MDS and acute myeloid leukemia post MDS mice models and highlights novel dysregulated pathways

description: GSEA analysis, (A) Endplot of significantly dysregulated pathways in HR-MDS vs FVB/N, (B) Endplot of significantly dysregulated pathways in AML post MDS vs FVB/N (ZIP 5853 kb)
DOI: 10.6084/m9.figshare.c.3646526_d3.v1
title: Additional file 1: of GEP analysis validates high risk MDS and acute myeloid leukemia post MDS mice models and highlights novel dysregulated pathways

description: Lists of regulated genes in HR-MDS and AML post MDS relative to FVB/N (Tables S1 to S31). (XLSX 1839 kb)
DOI: 10.6084/m9.figshare.c.3646529_d3.v1
title: Additional file 7: of Variant detection and runs of homozygosity in next generation sequencing data elucidate the genetic background of Lundehund syndrome

description: Runs of homozygosity for Lundehund specific regions in 500-SNP windows. The chromosomal position of ROH regions, number of SNPs in these regions (n), size in base pairs (size_bp), canine genes (gene) and human orthologues (human gene) are shown. (XLSX 88 kb)
DOI: 10.6084/m9.figshare.c.3646529_d6.v1
title: Additional file 5: of Variant detection and runs of homozygosity in next generation sequencing data elucidate the genetic background of Lundehund syndrome

description: Private runs of homozygosity for LS-affected Lundehund in 500-SNP windows. The chromosomal position of ROH regions, number of SNPs in these regions (n), size in base pairs (size_bp), canine genes (gene) and human orthologues (human gene) are shown. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.c.3646529_d9.v1
title: Additional file 4: of Variant detection and runs of homozygosity in next generation sequencing data elucidate the genetic background of Lundehund syndrome

description: Runs of homozygosity for LS-affected Lundehund in 500-SNP windows. The chromosomal position of ROH regions, number of SNPs in these regions (n), size in base pairs (size_bp), canine genes (gene) and human orthologues (human gene) are shown. (XLSX 319 kb)