cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3905351
title: Hyperspectral imagery - Mt Ruapehu volcano, New Zealand

description: This dataset contains an airborne hyperspectral image of Mt Ruapehu, New Zealand. The image was captured by an AISA Fenix pushbroom, full spectrum hyperspectral imaging system, on board of the Cessna 185 aircraft. The survey was taken between 10:25-12:45 NZST on 31 March 2018. The image has been covered to radiance and then surface reflectance using ATCOR4, and then geocoded using PARGE. The individual strips have been co-registered to high-resolution RGB orthophotos captured simultaneously with the hyperspectral data. More details of the processing and instrumentation please see: Kereszturi, G., Schaefer, L. N., Miller, C., & Mead, S. (2020). Hydrothermal alteration on composite volcanoes: Mineralogy, hyperspectral imaging, and aeromagnetic study of Mt Ruapehu, New Zealand. <em>Geochemistry, Geophysics, Geosystems</em>, 21, e2020GC009270. https://doi.org/10.1029/2020GC009270 Kereszturi, G., Schaefer, L. N., Mead, S., Miller, C., Procter, J. & Kennedy, B. (2021). Synthesis of hydrothermal alteration, rock mechanics and geophysical mapping to constrain failure and debris avalanche hazards at Mt. Ruapehu (New Zealand). <em>New Zealand Journal of Geology and Geophysics</em>, https://doi.org/10.1080/00288306.2021.1885048 Any queries or questions please contact me at G.Kereszturi@massey.ac.nz
DOI: 10.25345/c5v81d
title: MassIVE MSV000087389 - MassIVE of WCNA Time course study
title: Secondary Metabolite data that was used in study involving an eight day time series of Streptomyces coeiicolor. Analysis using weighted correlation network was performed on both metabolite and transcription datasets.
DOI: 10.6084/m9.figshare.3761562.v1862
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.4740877
title: Audio Piano Triads Dataset

description: Created by: Agustín Macaya Valladares<br> Date: May 5th, 2021 - Dataset contains 43.200 examples of piano triads in .wav format. Details:<br> - Sample rate: 16000 Hz.<br> - Data type: 16-bit PCM (int16).<br> - File size: Each example has a file size of 128 kB (5.53 GB for complete dataset).<br> - Duration: 4 seconds.<br> - Sound: Piano (digital).<br> - Chords were played by a human on a velocity-sensitive piano keyboard.<br> - 3 seconds pressed, 1 second released. - 3 octaves (2,3,4).<br> - 12 base notes per octave: Cn, Df, Dn, Ef, En, Fn, Gf, Gn, Af, An, Bf, Bn. (n is natural, f is flat).<br> - 4 triad types per note: major (j), minor (n), diminished (d), augmented (a). No inversions.<br> - 3 volumes per triad: forte (f), metsoforte (m), piano (p). <br> - 10 original examples per combination of octave, base note, triad type, and volume. (103*12*4*3 = 4.320 examples).<br> - x10 data augmentation for each example (4.320 * 10 = 43.200 total examples).<br> - Data augmentation through random temporal and amplitude shifts.<br> - Metadata is in the name of the chord. For example: "piano_3_Af_d_m_45.wav" is a piano chord, (3) 3rd octave, (Af) A flat base note, (d) diminished, (m) metsoforte, 45th example. Note:<br> - The audios are in 16-bit PCM (int16) data type to reduce the file size. This means that the dynamic range of values in the array is -32768 to 32768, integers. To normalize the audios in the range -1 to 1 just divide by 32768.
DOI: 10.5281/zenodo.4646986
title: Data: Identification of dominant hydrological mechanisms using Bayesian inference, multiple statistical hypothesis testing and flexible models

description: !===== ! Purpose: These folders provide data from the study of Prieto et al 2021 ! Prieto, C., Kavetski, D., Le Vine, N., Álvarez, C., and Medina, R. (2021), ! Identification of dominant hydrological mechanisms using Bayesian inference, ! multiple statistical hypothesis testing and flexible models, ! Water Resources Research, doi: 10.1029/2020WR028338 !===== 1. Folder "<strong>synthetic_scenarios</strong>": a) folder "reliability_and_power__low_error_med_error_high_error" This folder contains txt files with the values of: (i) reliability (ii) power (iii) true positives (iv) false positives (v) false negatives for different significance levels, error levels and processes, and across all error levels Processes are abbreviated as follows: a1 = unsaturated zone a2 = saturated zone esoil = evaporation interf = interflow perc = percolation rr = surface runoff rout = routing e.g. file "alpha_r_p_tp_fp_fn_low_error_a1.txt" contains the following information for the lowest error, for the processes in the unsaturated zone. first column = significance level, alpha second column = reliability, r third column = power, p fourth column = number of true positives, tp (out of 50) fifth column = number of false positives, fp (out of 50) sixth column = number of false negatives, fn (out of 50) 2. Folder "<strong>obs</strong>": a) file "c8z1_data_obs.txt": dates and observed hydrological data for the Leizarán catchment b) file "leizaran_mecha_identification.xlsx": number of bootstraps where a mechanism is identified as dominant for the different time periods and significance levels
DOI: 10.5281/zenodo.4646985
title: Data: Identification of dominant hydrological mechanisms using Bayesian inference, multiple statistical hypothesis testing and flexible models

description: !===== ! Purpose: These folders provide data from the study of Prieto et al 2021 ! Prieto, C., Kavetski, D., Le Vine, N., Álvarez, C., and Medina, R. (2021), ! Identification of dominant hydrological mechanisms using Bayesian inference, ! multiple statistical hypothesis testing and flexible models, ! Water Resources Research, doi: 10.1029/2020WR028338 !===== 1. Folder "<strong>synthetic_scenarios</strong>": a) folder "reliability_and_power__low_error_med_error_high_error" This folder contains txt files with the values of: (i) reliability (ii) power (iii) true positives (iv) false positives (v) false negatives for different significance levels, error levels and processes, and across all error levels Processes are abbreviated as follows: a1 = unsaturated zone a2 = saturated zone esoil = evaporation interf = interflow perc = percolation rr = surface runoff rout = routing e.g. file "alpha_r_p_tp_fp_fn_low_error_a1.txt" contains the following information for the lowest error, for the processes in the unsaturated zone. first column = significance level, alpha second column = reliability, r third column = power, p fourth column = number of true positives, tp (out of 50) fifth column = number of false positives, fp (out of 50) sixth column = number of false negatives, fn (out of 50) 2. Folder "<strong>obs</strong>": a) file "c8z1_data_obs.txt": dates and observed hydrological data for the Leizarán catchment b) file "leizaran_mecha_identification.xlsx": number of bootstraps where a mechanism is identified as dominant for the different time periods and significance levels
DOI: 10.6073/pasta/7216fe410a60a7280431cc9f9ea5eba5
title: CAP LTER weather stations at Papago Park and Lost Dutchman State Park in the greater Phoenix metropolitan area, ongoing since 2010

description: The CAP LTER maintains two micrometeorological stations (10-m height) in the greater Phoenix metropolitan area, including at Lost Dutchman State Park and near the Desert Botanical Garden at Papago Park. The local terrain at both sites is flat or gently sloping Sonoran desert, and the vegetation canopy consists of patchy coverage of desert shrubs and trees. The dominant vegetation species include bursage (*Ambrosia deltoidea*) and creosote bush (*Larrea tridentata*), while minor species include palo verde (*Parkinsonia microphylla*) and saguaro cactus (*Carnegiea gigantea*). Wind speed and direction, incoming solar radiation, air temperature, relative humidity, and precipitation have been monitored nearly continuously since the fall of 2010. Each variable is measured every 5 seconds and the average (or total for precipitation and total solar radiation) saved to a data logger every 10 minutes.
DOI: 10.15131/shef.data.5219956
title: A Land Cover Atlas of the United Kingdom (Maps)

description: This set of maps accompanies my related publication, entitled 'A Land Cover Atlas of the United Kingdom', https://doi.org/10.15131/shef.data.5266495, which was published at the same time.<br>Some of the maps in this set feature in the Atlas, but at a lower resolution. I have deposited them here as high resolution images (300dpi PNG files) so that interested users can access and download them.<br>These maps were created using open data and open source software (QGIS) and you are free to use them as you wish.<br>There is one map for each of the 391 Local Authority areas of the United Kingdom.<br>These maps are open data, but the provider of the Corine Land Cover data featured here requires the following statement to be cited when using it:<br>“Copyright rests with the European Commission; Acknowledgement: Produced by the University of Leicester, The Centre for Landscape and Climate Research and Specto Natura and supported by Defra and the European Environment Agency under Grant Agreement 3541/B2012/R0-GIO/EEA.55055 with funding by the European Union. <br>If you reuse the underlying data, you should cite: Cole, B., King, S., Ogutu, B., Palmer, D., Smith, G., Balzter, H. (2015). Corine Land Cover 2012 for the UK, Jersey and Guernsey. NERC Environmental Information Data Centre https://doi.org/10.5285/32533dd6-7c1b-43e1-b892-e80d61a5ea1d<br>This resource is made available under the terms of the Open Government Licence (http://eidc.ceh.ac.uk/administration-folder/tools/ceh-standard-licence-texts/open-government-licence-corine/plain)”.<br><br>
DOI: 10.15131/shef.data.4802203
title: Bit Error Rate Performance of Quadrature Modulation Transmission Using Reconfigurable Frequency Selective Surfaces- AWPL2017

description: This dataset contains open raw data for the paper in Antennas and Wireless Propagation Letters, "Bit Error Rate Performance of Quadrature Modulation Transmission Using Reconfigurable Frequency Selective Surfaces". <br><br>Note that due to the very high number of samples required, no raw data from BER measurements were retained at the time of measurement. Immediately processed data is included.<br>
DOI: 10.6084/m9.figshare.12850466
title: Concentration of fecal calprotectin in 11,255 children aged 0–18 years

description: Fecal calprotectin is a valued surrogate marker for intestinal inflammation. It has been argued that calprotectin levels are higher in early age than in later life hampering the use of calprotectin in young children. To study age-related variation, we used data from our laboratory information system on consecutive, unselected fecal calprotectin measurements from 2014 to 2017 in all children aged 0 to 18 years. From each individual, the first measurement was included and repeated measurements were excluded. Fecal calprotectin was quantitated in the major clinical laboratory in southern Finland, HUSLAB with an ELISA kit from Calpro AS (Calpro/Calprolab, Oslo, Norway). Currently, the assay is performed on two automatic pipetting analysers (Dynex DS2, Chantilly, USA) according to the instructions of the manufacturer. There were altogether 11,255 fecal calprotectin results from as many children. The median level of fecal calprotectin was 51 mg/kg in infants &lt; 1 year of age (95<sup>th</sup> percentile 648 mg/kg; <i>n</i> = 239). This was 3–4-fold higher when compared to yearly age groups from 1 to 10 years (total number of children included 5,691). Across yearly age groups from 11 to 18, the median values varied from 11 to 19 mg/kg (total number of included children 5,325). The proportion of samples above the routine cut-off for an elevated concentration &gt;100 mg/kg increased with increasing age. Fecal calprotectin values in children beyond the first year of life are in general low and comparable in children and adolescents.
DOI: 10.6084/m9.figshare.12850466.v1
title: Concentration of fecal calprotectin in 11,255 children aged 0–18 years

description: Fecal calprotectin is a valued surrogate marker for intestinal inflammation. It has been argued that calprotectin levels are higher in early age than in later life hampering the use of calprotectin in young children. To study age-related variation, we used data from our laboratory information system on consecutive, unselected fecal calprotectin measurements from 2014 to 2017 in all children aged 0 to 18 years. From each individual, the first measurement was included and repeated measurements were excluded. Fecal calprotectin was quantitated in the major clinical laboratory in southern Finland, HUSLAB with an ELISA kit from Calpro AS (Calpro/Calprolab, Oslo, Norway). Currently, the assay is performed on two automatic pipetting analysers (Dynex DS2, Chantilly, USA) according to the instructions of the manufacturer. There were altogether 11,255 fecal calprotectin results from as many children. The median level of fecal calprotectin was 51 mg/kg in infants &lt; 1 year of age (95<sup>th</sup> percentile 648 mg/kg; <i>n</i> = 239). This was 3–4-fold higher when compared to yearly age groups from 1 to 10 years (total number of children included 5,691). Across yearly age groups from 11 to 18, the median values varied from 11 to 19 mg/kg (total number of included children 5,325). The proportion of samples above the routine cut-off for an elevated concentration &gt;100 mg/kg increased with increasing age. Fecal calprotectin values in children beyond the first year of life are in general low and comparable in children and adolescents.
DOI: 10.6084/m9.figshare.12850460.v1
title: Case-only analysis of gene–gene interactions in inflammatory bowel disease

description: Gene–gene interactions (G × G) potentially play a role in the etiology of complex human diseases, including inflammatory bowel disease (IBD), and may partially explain their ‘missing heritability’. Using the largest genotype dataset available for IBD (16,636 Crohn’s disease (CD) and 12,888 ulcerative colitis (UC) cases) we analyzed G × G with the powerful case-only (CO) design. We studied 169 single nucleotide polymorphisms (SNPs) for CD (156 for UC), previously shown to be associated with the respective diseases. To ensure the validity of the CO design, we confined our analysis to pairs of unlinked SNPs. We used principal component analysis at the center level to adjust for possible causes of genotypic association other than G × G, such as population stratification and genotyping batch effects. Results from center-wise logistic regression analyses were combined by a random effects meta-analysis. A number of nominally significant (<i>p</i> IL27 gene and rs9297145 in the <i>KPNA7</i> gene region was characterized by an interaction odds ratio of 1.18 (95% CI: 1.10–1.27) for CD and a <i>p</i>-value of 7.75 × 10<sup>−6</sup>. Owing to the concurrent role of the <i>IL27</i> and <i>KPNA7</i> genes in NF-κB signaling, a master regulator of pro- and anti-inflammatory processes in IBD, the observed interaction also has biological plausibility. We were able to exemplify the utility of the CO design for analyzing G × G, but had to recognize that such interactions are probably scarce for IBD.
DOI: 10.6084/m9.figshare.12850460
title: Case-only analysis of gene–gene interactions in inflammatory bowel disease

description: Gene–gene interactions (G × G) potentially play a role in the etiology of complex human diseases, including inflammatory bowel disease (IBD), and may partially explain their ‘missing heritability’. Using the largest genotype dataset available for IBD (16,636 Crohn’s disease (CD) and 12,888 ulcerative colitis (UC) cases) we analyzed G × G with the powerful case-only (CO) design. We studied 169 single nucleotide polymorphisms (SNPs) for CD (156 for UC), previously shown to be associated with the respective diseases. To ensure the validity of the CO design, we confined our analysis to pairs of unlinked SNPs. We used principal component analysis at the center level to adjust for possible causes of genotypic association other than G × G, such as population stratification and genotyping batch effects. Results from center-wise logistic regression analyses were combined by a random effects meta-analysis. A number of nominally significant (<i>p</i> IL27 gene and rs9297145 in the <i>KPNA7</i> gene region was characterized by an interaction odds ratio of 1.18 (95% CI: 1.10–1.27) for CD and a <i>p</i>-value of 7.75 × 10<sup>−6</sup>. Owing to the concurrent role of the <i>IL27</i> and <i>KPNA7</i> genes in NF-κB signaling, a master regulator of pro- and anti-inflammatory processes in IBD, the observed interaction also has biological plausibility. We were able to exemplify the utility of the CO design for analyzing G × G, but had to recognize that such interactions are probably scarce for IBD.
DOI: 10.6084/m9.figshare.12968092
title: Childhood growth prior to screen-detected celiac disease: prospective follow-up of an at-risk birth cohort

description: To determine the association between childhood growth prior to the development of celiac disease (CD) and CD autoimmunity (CDA) identified by periodic serological screening. The Diabetes Autoimmunity Study in the Young cohort includes 1979 genetically at-risk children from Denver, Colorado, with annual growth measurements from age nine months until ten years. Between 1993 and February 2019, 120 children developed CDA defined by persistent positive tissue transglutaminase autoantibodies (TGA); among these, 71 met our criteria for CD based on histopathological findings or high TGA levels. Age- and sex-specific <i>z</i>-scores of weight, body mass index (BMI), and height prior to seroconversion were derived using US reference charts as standards. Joint modeling of serial growth measurements was used to estimate adjusted hazard ratios (aHRs) accounting for celiac-associated human leukocyte antigens, early-life feeding practices, and socio-demographics. In the first 10 years of life, there were no significant associations between the child’s current weight, BMI and height and the risk of screening-detected CDA or CD, neither was the weight nor BMI velocity associated with CDA or CD as identified by screening (all aHRs approximated 1). Increased height velocity was associated with later CD, but not CDA, development (aHR per 0.01-<i>z</i> score/year, 1.28; 95% confidence interval [CI] 1.18–1.38 and 1.03; 0.97–1.09, respectively). In the first 10 years of life, from prospectively collected serial growth measurements, we found no evidence of impaired childhood growth before CD and CDA development as identified through early and periodic screening.
DOI: 10.6084/m9.figshare.12968092.v1
title: Childhood growth prior to screen-detected celiac disease: prospective follow-up of an at-risk birth cohort

description: To determine the association between childhood growth prior to the development of celiac disease (CD) and CD autoimmunity (CDA) identified by periodic serological screening. The Diabetes Autoimmunity Study in the Young cohort includes 1979 genetically at-risk children from Denver, Colorado, with annual growth measurements from age nine months until ten years. Between 1993 and February 2019, 120 children developed CDA defined by persistent positive tissue transglutaminase autoantibodies (TGA); among these, 71 met our criteria for CD based on histopathological findings or high TGA levels. Age- and sex-specific <i>z</i>-scores of weight, body mass index (BMI), and height prior to seroconversion were derived using US reference charts as standards. Joint modeling of serial growth measurements was used to estimate adjusted hazard ratios (aHRs) accounting for celiac-associated human leukocyte antigens, early-life feeding practices, and socio-demographics. In the first 10 years of life, there were no significant associations between the child’s current weight, BMI and height and the risk of screening-detected CDA or CD, neither was the weight nor BMI velocity associated with CDA or CD as identified by screening (all aHRs approximated 1). Increased height velocity was associated with later CD, but not CDA, development (aHR per 0.01-<i>z</i> score/year, 1.28; 95% confidence interval [CI] 1.18–1.38 and 1.03; 0.97–1.09, respectively). In the first 10 years of life, from prospectively collected serial growth measurements, we found no evidence of impaired childhood growth before CD and CDA development as identified through early and periodic screening.
DOI: 10.6084/m9.figshare.13035055
title: Comparison of conventional scoring systems versus MAGIC score to predict short-term mortality in patients hospitalized for alcoholic hepatitis

description: Multiple prognostic models are available to predict mortality in alcoholic hepatitis (AH) which are of modest benefit, but the best model remains unexplored. This is a retrospective analysis (2012–2015) of AH patients. Conventional prognostic scoring systems viz. Maddrey’s Discriminant Function (mDF), Age Bilirubin International Normalized Ratio and Creatinine (ABIC), Glasgow Alcoholic Hepatitis Score (GAHS), and the Model for End-stage Liver Disease score (MELD), were compared with Model for AH to Grade the Severity in an Asian patient cohort (MAGIC) score, using area under the ROC curves for ascertaining 30/90-day mortality. Eighty-eight patients (100% male); mean (SD) age of 45.6 (7.6) years with a follow-up of 80.7 (45.1) days were included. The 30 and 90-day mortality were 21 (23.9%) and 42 (47.7%), respectively; the commonest cause being sepsis in 22 (48.9%) patients. Survival probabilities for mDF &lt; 32 and mDF &gt; 32 were 100% and 42.25% ± 4.46%, respectively (<i>p</i> = .001). The mean (SD) scores of mDF, MELD and GAHS were significantly higher in deceased patients 70.8 (26.5), 23.4 (5.2), 8.1 (1.01), respectively, as compared to those who survived 40.8 (23.1), 18.9 (5.1), 7.3 (0.9), respectively; <i>p</i> = .001. ABIC and MAGIC scores were higher among the deceased, but were not significant. mDF had the best predictive AUROC value 0.872, followed by MELD 0.772, and MAGIC 0.626, respectively. mDF was significantly superior in comparison to MAGIC score (<i>p</i> This study showed that mDF had a better predictive performance than other scoring systems in patients with AH.
DOI: 10.6084/m9.figshare.13035055.v1
title: Comparison of conventional scoring systems versus MAGIC score to predict short-term mortality in patients hospitalized for alcoholic hepatitis

description: Multiple prognostic models are available to predict mortality in alcoholic hepatitis (AH) which are of modest benefit, but the best model remains unexplored. This is a retrospective analysis (2012–2015) of AH patients. Conventional prognostic scoring systems viz. Maddrey’s Discriminant Function (mDF), Age Bilirubin International Normalized Ratio and Creatinine (ABIC), Glasgow Alcoholic Hepatitis Score (GAHS), and the Model for End-stage Liver Disease score (MELD), were compared with Model for AH to Grade the Severity in an Asian patient cohort (MAGIC) score, using area under the ROC curves for ascertaining 30/90-day mortality. Eighty-eight patients (100% male); mean (SD) age of 45.6 (7.6) years with a follow-up of 80.7 (45.1) days were included. The 30 and 90-day mortality were 21 (23.9%) and 42 (47.7%), respectively; the commonest cause being sepsis in 22 (48.9%) patients. Survival probabilities for mDF &lt; 32 and mDF &gt; 32 were 100% and 42.25% ± 4.46%, respectively (<i>p</i> = .001). The mean (SD) scores of mDF, MELD and GAHS were significantly higher in deceased patients 70.8 (26.5), 23.4 (5.2), 8.1 (1.01), respectively, as compared to those who survived 40.8 (23.1), 18.9 (5.1), 7.3 (0.9), respectively; <i>p</i> = .001. ABIC and MAGIC scores were higher among the deceased, but were not significant. mDF had the best predictive AUROC value 0.872, followed by MELD 0.772, and MAGIC 0.626, respectively. mDF was significantly superior in comparison to MAGIC score (<i>p</i> This study showed that mDF had a better predictive performance than other scoring systems in patients with AH.