cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/j2gyb9gkv3.4
title: Data and Models for: Discrepancy Principle as an Optimization Method for a Gauss-Newton Inversion Scheme

description: This file corresponds to the raw data and inverted models used in the article.
DOI: 10.17632/2pm28xft8r.1
title: LINF_040016100

description: FAZ32; Leishmania infantum (strain JPCM5)
DOI: 10.17632/fvjkd5bb6p.1
title: Abordaje y tratamiento del pie diabético

description: El abordaje del pie diabético implica un proceso multidisciplinario y para su tratamiento la enzima proteolítica colagenasa demostró ser una aliada invaluable para la cicatrización de heridas, con excelente tolerancia.
DOI: 10.17632/5ztrw7rbdt.1
title: LINF_040011700

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/x5gf83n3nn.1
title: LINF_030010500

description: Quinone oxidoreductase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/r87cvk4mp8.1
title: ConeMapper: Automatic annotation and analysis of foveolar cone photoreceptor topography.

description: Data alongside publication
DOI: 10.17632/sw65dntxgk.1
title: Health Coaching and Glycemic Control

description: This dataset represents research data that assessed the effect of adding health coaching on glycemic control in patients with type 2 diabetes. A randomised controlled study conducted in one of the hospitals in Indonesia. The intervention was adding health coaching to standard diabetes care and compared with standard care only. Outcome (HbA1c) was measured at baseline and 12 weeks. 134 patients participated divided into two groups, 66 were allocated to the intervention group and 68 to the standard care group as controls. 124 outcomes were measured at the end of the study.
DOI: 10.17632/fsdkzzhw2w.2
title: Dairy farmer succession planning

description: These files represent the collection of data on the intention of rural producers to adopt family succession planning in milk production.
The data was collected from 160 dairy farmers in the state of Paraná - Brazil.
DOI: 10.5281/zenodo.14699757
title: Disrupted sensorimotor predictions in high autistic characteristics.
DOI: 10.5281/zenodo.14699758
title: Disrupted sensorimotor predictions in high autistic characteristics.
DOI: 10.17632/fsdkzzhw2w.1
title: Dairy farmer succession planning

description: These files represent the collection of data on the intention of rural producers to adopt family succession planning in milk production.
The data was collected from 160 dairy farmers in the state of Paraná - Brazil.
DOI: 10.17632/5m98kvdkyt.1
title: UAVS-FDDB: UAVs-based Forest Fire Detection Database

description: The UAVs-based Forest Fire Database (UAVs-FFDB) encompasses four distinct classes:
1. Pre-evening Forest Condition
2. Evening Forest Condition
3. Pre-evening Fire Incident
4. Evening Fire Incident. 
The images were captured using UAVs equipped with Raspberry Pi Camera V2 technology in the forested areas surrounding Adana Alparslan Türkeş Science and Technology University, Adana, Turkey. This dataset is divided into two main components: original data (raw) and augmented data, each accompanied by an annotation file. The raw data comprises 1,653 images, while the augmented dataset contains 15,560 images. Below is the distribution of images across the four classes:

-Raw Data 
Pre-evening Forest Condition = 222
Evening Forest Condition = 286 
Pre-evening Fire Incident = 791 
Evening Fire Incident = 354 

-Augmented Data
Pre-evening Forest Condition = 3,890
Evening Forest Condition = 3,890
Pre-evening Fire Incident = 3,890
Evening Fire Incident = 3,890
DOI: 10.17632/5m98kvdkyt.2
title: UAVS-FDDB: UAVs-based Forest Fire Detection Database

description: The UAVs-based Forest Fire Database (UAVs-FFDB) encompasses four distinct classes:
1. Pre-evening Forest Condition
2. Evening Forest Condition
3. Pre-evening Fire Incident
4. Evening Fire Incident. 
The images were captured using UAVs equipped with Raspberry Pi Camera V2 technology in the forested areas surrounding Adana Alparslan Türkeş Science and Technology University, Adana, Turkey. This dataset is divided into two main components: original data (raw) and augmented data, each accompanied by an annotation file. The raw data comprises 1,653 images, while the augmented dataset contains 15,560 images. Below is the distribution of images across the four classes:

-Raw Data 
Pre-evening Forest Condition = 222
Evening Forest Condition = 286 
Pre-evening Fire Incident = 791 
Evening Fire Incident = 354 

-Augmented Data
Pre-evening Forest Condition = 3,890
Evening Forest Condition = 3,890
Pre-evening Fire Incident = 3,890
Evening Fire Incident = 3,890
DOI: 10.17632/868n2hkhfr.2
title: Quantitiative Data on Industrial Logistics' Decarbonization Progress in Austria

description: Results from a quantitative survey conducted in Austria during the summer of 2022
DOI: 10.17632/5m98kvdkyt.3
title: UAVS-FDDB: UAVs-based Forest Fire Detection Database

description: The UAVs-based Forest Fire Database (UAVs-FFDB) encompasses four distinct classes:
1. Pre-evening Forest Condition
2. Evening Forest Condition
3. Pre-evening Fire Incident
4. Evening Fire Incident. 
The images were captured using UAVs equipped with Raspberry Pi Camera V2 technology in the forested areas surrounding Adana Alparslan Türkeş Science and Technology University, Adana, Turkey. This dataset is divided into two main components: original data (raw) and augmented data, each accompanied by an annotation file. The raw data comprises 1,653 images, while the augmented dataset contains 15,560 images. Below is the distribution of images across the four classes:

- Raw Data 
Pre-evening Forest Condition = 222
Evening Forest Condition = 286 
Pre-evening Fire Incident = 791 
Evening Fire Incident = 354 

- Augmented Data
Pre-evening Forest Condition = 3,890
Evening Forest Condition = 3,890
Pre-evening Fire Incident = 3,890
Evening Fire Incident = 3,890
DOI: 10.7488/ds/7857
title: The NE/AAT/CBG axis regulates adipose tissue glucocorticoid exposure

description: These are the source data underlying the figures presented in the manuscript accepted in Nature Communications. These are the source data underlying the figures presented in a manuscript entitled "The NE/AAT/CBG axis regulates adipose tissue glucocorticoid exposure", which has been provisionally accepted for publication in Nature Communications. Once published, the metadata for this dataset will be updated with the DOI of the published paper. Corticosteroid binding globulin (CBG; SERPINA6) binds &gt;85% of circulating glucocorticoids but its influence on their metabolic actions is unproven. Targeted proteolytic cleavage of CBG by neutrophil elastase (NE; ELANE) significantly reduces CBG binding affinity, potentially increasing ‘free’ glucocorticoid levels at sites of inflammation. NE is inhibited by alpha-1-antitrypsin (AAT; SERPINA1). Using complementary approaches in mice and humans to manipulate NE or AAT, we show high-fat diet (HFD) increases the NE:AAT ratio specifically in murine visceral adipose tissue, an effect only observed in males. Notably, HFD-fed male mice lacking NE have reduced glucocorticoid levels and action specifically in visceral adipose tissue, with improved glucose tolerance and insulin sensitivity, independent of systemic changes in free glucocorticoids. The protective effect of NE deficiency is lost when the adrenals are removed. Moreover, human asymptomatic heterozygous carriers of deleterious mutations in SERPINA1 resulting in lower AAT levels have increased adipose tissue glucocorticoid levels and action. However, in contrast to mice, humans present with systemic increases in free circulating glucocorticoid levels, an effect independent of HPA axis activation. These findings show that NE and AAT regulate local tissue glucocorticoid bioavailability in vivo, providing crucial evidence of a mechanism linking inflammation and metabolism.
DOI: 10.17632/n24jkp487r.1
title: MATADOR: A prospective, randomised, phase III biomarker trial in breast cancer patients

description: A prospective, randomised, phase III biomarker trial (ISRCTN61893718) that run in 29 hospitals in the Netherlands. 664 Patients with an indication for adjuvant chemotherapy and a pT1-3, pN0-3 tumour were randomised 1:1 to 6 cycles of doxorubicin 60 mg/m2 and cyclophosphamide 600 mg/m2 every 2 weeks [dose dense (dd) AC] or docetaxel 75 mg/m2, doxorubicin 50 mg/m2, and cyclophosphamide 500 mg/m2 every 3 weeks (docetaxel-doxorubicin-cyclophosphamide; TAC) by means of the automated ALEA system (FormsVision BV) using Pocock minimization technique. Randomization was performed centrally at the Netherlands Cancer Institute. G-CSF (pegfilgrastim) was given to all patients. Radiotherapy and endocrine therapy were given according to the contemporary Dutch guidelines.

Formalin-fixed paraffin-embedded (FFPE) material was collected between 2004 and 2012. RNA was isolated from FFPE tissue with a tumor cell percentage of at least 40% using the AllPrep DNA/RNA Mini Kit according to the manufacturer's instructions (Qiagen). Quantification and purity were measured using the NanoDrop 2,000 spectrophotometer and the 2,100 Bioanalyzer (Agilent Technologies). Libraries of cDNA were constructed with the TruSeq RNA Access Library Prep Kit (Illumina) and single-end sequenced using the HiSeq 2,500 (Illumina). Bulk mRNA sequencing data were analyzed using the RSEM package and the reads were aligned to the hg38 reference genome using STAR with default parameters.
DOI: 10.17632/n24jkp487r.2
title: MATADOR: A prospective, randomised, phase III biomarker trial in breast cancer patients

description: A prospective, randomised, phase III biomarker trial (ISRCTN61893718) that run in 29 hospitals in the Netherlands. 664 Patients with an indication for adjuvant chemotherapy and a pT1-3, pN0-3 tumour were randomised 1:1 to 6 cycles of doxorubicin 60 mg/m2 and cyclophosphamide 600 mg/m2 every 2 weeks [dose dense (dd) AC] or docetaxel 75 mg/m2, doxorubicin 50 mg/m2, and cyclophosphamide 500 mg/m2 every 3 weeks (docetaxel-doxorubicin-cyclophosphamide; TAC) by means of the automated ALEA system (FormsVision BV) using Pocock minimization technique. Randomization was performed centrally at the Netherlands Cancer Institute. G-CSF (pegfilgrastim) was given to all patients. Radiotherapy and endocrine therapy were given according to the contemporary Dutch guidelines.

Formalin-fixed paraffin-embedded (FFPE) material was collected between 2004 and 2012. RNA was isolated from FFPE tissue with a tumor cell percentage of at least 40% using the AllPrep DNA/RNA Mini Kit according to the manufacturer's instructions (Qiagen). Quantification and purity were measured using the NanoDrop 2,000 spectrophotometer and the 2,100 Bioanalyzer (Agilent Technologies). Libraries of cDNA were constructed with the TruSeq RNA Access Library Prep Kit (Illumina) and single-end sequenced using the HiSeq 2,500 (Illumina). Bulk mRNA sequencing data were analyzed using the RSEM package and the reads were aligned to the hg38 reference genome using STAR with default parameters.
DOI: 10.17632/6bph26nct2.1
title: Vulpes vulpes and Vulpes lagopus morphometric data_Canadian low Arctic

description: This data set contains morphometry data and individual characteristics of red foxes (Vulpes vulpes) and Arctic (Vulpes lagopus) legally harvested in 2017 and 2018 in and around Churchill, Manitoba, Canada. This area is located near treeline, on the western coast of the Hudson Bay, and its winters are characterized by harsh abiotic conditions and prey scarcity. A red fox population became established on the coastal tundra, possibly competing with the native Arctic fox. We used these data to quantify species-size difference to predict the potential strength of interference competition, notably the likelihood of the larger competitor escalating interference to intraguild killing. Size difference was intermediate ( see Donadio & Buskirk, 2006) in body mass and linear dimension, which would favor strong interference competition over limited resources, with a high risk of red foxes escalating interference to intraguild killing.
Animals were aged using canine cementum annuli count (Matson’s lab, Manhattan, Montana, USA). Note that we only sent canines with a proportional size of pulp cavity compared to tooth width of 40% and less, a threshold under which we considered animals were subadults.
DOI: 10.17632/6bph26nct2.2
title: Vulpes vulpes and Vulpes lagopus morphometric data_Canadian low Arctic

description: This data set contains morphometry data and individual characteristics of red foxes (Vulpes vulpes) and Arctic (Vulpes lagopus) legally harvested in 2017 and 2018 in and around Churchill, Manitoba, Canada. This area is located near treeline, on the western coast of the Hudson Bay, and its winters are characterized by harsh abiotic conditions and prey scarcity. A red fox population became established on the coastal tundra, possibly competing with the native Arctic fox. We used these data to quantify species-size difference to predict the potential strength of interference competition, notably the likelihood of the larger competitor escalating interference to intraguild killing. Size difference was intermediate ( see Donadio & Buskirk, 2006) in body mass and linear dimension, which would favor strong interference competition over limited resources, with a high risk of red foxes escalating interference to intraguild killing.
Animals were aged using canine cementum annuli count (Matson’s lab, Manhattan, Montana, USA). Note that we only sent canines with a proportional size of pulp cavity compared to tooth width of 40% and less, a threshold under which we considered animals were subadults.
DOI: 10.17632/6bph26nct2.3
title: Vulpes vulpes and Vulpes lagopus morphometric data_Canadian low Arctic

description: This data set contains morphometry data and individual characteristics of red foxes (Vulpes vulpes) and Arctic (Vulpes lagopus) legally harvested in 2017 and 2018 in and around Churchill, Manitoba, Canada. This area is located near treeline, on the western coast of the Hudson Bay, and its winters are characterized by harsh abiotic conditions and prey scarcity. A red fox population became established on the coastal tundra, possibly competing with the native Arctic fox. We used these data to quantify species-size difference to predict the potential strength of interference competition, notably the likelihood of the larger competitor escalating interference to intraguild killing. Size difference was intermediate ( see Donadio & Buskirk, 2006) in body mass and linear dimension, which would favor strong interference competition over limited resources, with a high risk of red foxes escalating interference to intraguild killing.
Animals were aged using canine cementum annuli count (Matson’s lab, Manhattan, Montana, USA). Note that we only sent canines with a proportional size of pulp cavity compared to tooth width of 40% and less, a threshold under which we considered animals were subadults.
DOI: 10.17632/5xyxgzm4hp.1
title: Trace element data of competitive ligand exchange experiments on water and soils from eight Aotearoa-New Zealand caves

description: This dataset provides the underlying experimental data discussed in the manuscript "Characterising the decay of organic metal complexes in speleothem-forming cave waters" by Sebastian N. Höpker, Sebastian F. M. Breitenbach, Megan Grainger, Claudine H. Stirling, and Adam Hartland.

The dataset is the basis for the kinetic characterisation of organic metal complex (OMC) dissociation rates in water samples (drips and cave streams) and soil extracts (1:10 weight:volume CaCl2 extraction) from eight cave systems in Aotearoa-New Zealand. The study aimed to explore the magnitude and variability of OMC stability in various karst systems to assess the role of OMC decay in determining speleothem (cave carbonate) trace metal concentrations. Kinetic experiments were conducted using competitive ligand exchange (CLE) with Chelex-100 resin as competing ligand. Cave water samples were spiked with 5 ppb of Co, Ni, Cu prior to analysis. Experiments were carried out at solution pH 8.5 and ca. 22 °C. Upon addition of Chelex-100, 11 aliquots were taken over the course of 2 hours via a syringe, and immediately filtered using 0.45 micron filters. Quantification of metal concentrations as reported here was carried out by inductively-coupled plasma mass spectrometry (ICP-MS). Most experiments clearly depict an exponential decrease in metal concentrations in the test solutions over time, reflecting the dissociation of OMCs present in the solution. The data were used to fit kinetic models and derive dissociation rate constants discussed in the manuscript.
DOI: 10.17632/5xyxgzm4hp.2
title: Trace element and kinetic data from competitive ligand exchange experiments on water and soils from eight Aotearoa-New Zealand caves

description: This dataset provides all data discussed and presented in the manuscript "Characterising the decay of organic metal complexes in speleothem-forming cave waters" by Sebastian N. Höpker, Sebastian F. M. Breitenbach, Megan Grainger, Claudine H. Stirling, and Adam Hartland.

The dataset is the basis for the kinetic characterisation of organic metal complex (OMC) dissociation rates in water samples (drips and cave streams) and soil extracts (1:10 weight:volume CaCl2 extraction) from eight cave systems in Aotearoa-New Zealand. The study aimed to explore the magnitude and variability of OMC stability in various karst systems to assess the role of OMC decay in determining speleothem (cave carbonate) trace metal concentrations. Kinetic experiments were conducted using competitive ligand exchange (CLE) with Chelex-100 resin as competing ligand. Cave water samples were spiked with 5 ppb of Co, Ni, Cu prior to analysis. Experiments were carried out at solution pH 8.5 and ca. 22 °C. Upon addition of Chelex-100, 11 aliquots were taken over the course of 2 hours via a syringe, and immediately filtered using 0.45 micron filters. Quantification of metal concentrations as reported here was carried out by inductively-coupled plasma mass spectrometry (ICP-MS). Most experiments clearly depict an exponential decrease in metal concentrations in the test solutions over time, reflecting the dissociation of OMCs present in the solution. The data were used to fit kinetic models and derive dissociation rate constants discussed in the manuscript. The dataset further includes all manuscript tables and supplementary tables, as well as data used in a simple forward model presented in the manuscript. Data are provided in individual tabs. A brief description of each tab and variable is provided in the tab "README". 

Our experiments corroborated that NOM ligands limit transition metal availability at the dripwater-speleothem interface, exhibiting stabilities on the order Cu ≈ Co &gt; Ni, whereas organic complexation of the alkaline earth metals Mg and Sr was virtually absent. Systematic variations of OMC stability with NOM characteristics were not observed amongst water samples, whilst enhanced complexation was clearly evident in the comparably organic-rich soil extracts. Our results imply that the supply of transition metals to speleothems is inversely related to drip rate, increasing with drip interval via the decay of OMCs. This process appears most sensitive on time-scales relevant to typical speleothem-forming settings (&lt;0 to ca. 40 drips min-1, corresponding to ca. &lt;5.6 mL min-1), and therefore provides a general, mechanistic link to a quantitative proxy of palaeoclimatic cave drip rates.
DOI: 10.17632/htt4smrj7c.1
title: Laboratory tests on the effects of intermittent water supply - simple system

description: Set-up and data acquisition systems are described in (Ferrante et al., 2022) and (Ferrante et al., 2024).
Test_1 : pump feeding conditions (p=pressure at Pp, P84, P191, q=discharge at FM)
Test_2 : air vessel feeding conditions(p2=pressure at Pp, P84, P191, q2=discharge at FM)

M. Ferrante, D. Rogers, J. Mugabi, and F. Casinini, "A laboratory set-up for the analysis of intermittent water supply: first results", WATER, vol. 14, pp. 936, 2022. Available: https://www.mdpi.com/2073-4441/14/6/936.
M. Ferrante, D. Rogers, J. Mugabi, and F. Casinini, “A laboratory investigation on the effects of intermittent water supply and remedial measures”, WATER RESOUR RES, 2024, Accepted for publication.
DOI: 10.17632/939t69jcms.1
title: LINF_360020200

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/7p4j2525rj.1
title: LINF_360019800

description: Transitional endoplasmic reticulum ATPase (TER ATPase) | AAA+ ATPase | valosin-containing protein (VCP)/p97
Leishmania infantum (strain JPCM5)
DOI: 10.17632/v88ytm9jrf.2
title: LEGACy CS3

description: The Educational intervention study consisted on an online module disseminated through various media channels to recruit potential participants from the general population. Participants provided consent through an online informed consent form. Then they completed an online questionnaire assessing their knowledge of GC risk factors and symptoms (baseline survey). After completing the questionnaire, participants received an informational brochure and a short video containing essential information about GC. After that, the same online questionnaire was completed again at short term (immediately after the intervention) and long-term intervals (around 3 months after the intervention) to evaluate the impact of our educational intervention program.
The primary outcome was to evaluate the overall knowledge (global score) obtained before and after the intervention as a measurement of the learning curve. The secondary outcome was to study the demographic and epidemiological factors associated with the pre-intervention knowledge score that potentially influences the results.
Data included in this dataset corresponds to the answers given to the questionnaires and some demographic data associated to each participant.
To evaluate the impact of intervention a global score to summarize GC knowledge was constructed by giving one point for each correctly answered question.
DOI: 10.17632/4dppn7py6h.1
title: LINF_360022400

description: universal minicircle sequence binding protein | UMSBP1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/2hgpxw2jyv.1
title: LINF_360020500

description: Translation elongation factor 1-B (subunit alpha) | eEF1B-alpha
Leishmania infantum (strain JPCM5)
DOI: 10.17632/r48j73vbkt.1
title: LINF_360021400

description: serine/threonine protein kinase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/r46wfcj9hw.1
title: Fire stimulates seedling recruitment from the seed bank in the Cerrado

description: Seed bank seedling density per plant species from sites with different fire histories, before and after prescribed fires, in open savannas of the Cerrado in Southeastern Brazil.
DOI: 10.5281/zenodo.14689252
title: Meta-analysis:Does cryopreservation uniformly affect the DNA fragmentation rate of spermatozoa of men with different states of spermatogenesis?

description: The primary data of the meta-analysis of the study on the effect of the cryopreservation method (a method of rapid cooling and vitrification) on the occurrence of DNA damage in spermatozoa of men with different stages of spermatogenesis are presented. Methods. The search was carried out in the Medline, Embase, PubMed and Google Scholar databases. The article analyzed 52 studies that were presented in 32 scientific articles. The data analyzed included sample sizes and outcome measures with mean and standard deviations. The measurement results were converted to SMD with 95% CI. Heterogeneity was assessed using the I2 statistic. Statistical analysis was performed using RevMan 5.4 (statistical method – Inverse Variance).