cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5123575.v1
title: Supplementary Material for: Differential Expression of <b><i>SLC9A9</i></b> and Interacting Molecules in the Hippocampus of Rat Models for Attention Deficit/Hyperactivity Disorder

description: <i>SLC9A9</i> [solute carrier family 9, member 9, also known as Na<sup>+</sup>/H<sup>+</sup> exchanger member 9 (NHE9)], has been implicated in human attention deficit/hyperactivity disorder (ADHD), autism, and rat studies of hyperactivity and inattentiveness. <i>SLC9A9</i> is a membrane protein that regulates the luminal pH of the recycling endosome. We recently reported the interactions of <i>SLC9A9</i> with two molecules: calcineurin homologous protein <i>(CHP)</i> and receptor for activated C-kinase 1 <i>(RACK1)</i>. We also reported two novel <i>SLC9A9</i> mutations and abnormal gene expression profiles in the brains of an inattentive type rat model of ADHD (WKY/NCrl rat). In this study, we further examined the expression and relationship of <i>SLC9A9</i> and 9 additional genes <i>(CHP, RACK1, CaM, PPP3R1, PPP1R10, PKCm, CaMKI, NR2B, PLCb1)</i> that may directly or indirectly interact with <i>SLC9A9</i> in the hippocampus of the WKY/NCrl rat and the spontaneously hypertensive rat (SHR) model of the combined type of ADHD. We found that the expression levels of these genes were significantly correlated, suggesting that they may be coregulated. Principal component analysis identified two main factors that accounted for 94% of the expression variance of the 10 genes. Significant differences were found for both factors across the 3 different rat strains. The two ADHD rat models (WKY/NCrl and SHR), although different from each other in adulthood, showed similar profiles in adolescence. Both models were significantly different from WKY/NHsd control rats at both ages. The expression abnormalities of each gene were evaluated and their roles in cell signaling processes such as calcium signaling and protein phosphorylation are discussed. Our results suggest that abnormalities in <i>SLC9A9</i>-mediated signaling pathways could contribute to the ADHD phenotype of two rat models (WKY/NCrl and SHR/NCrl), and that the perturbation of the <i>SLC9A9</i> network is age-dependent.
DOI: 10.17632/835wchk797
title: Academic and Industrial Prospects of Sodium-ion batteries: Combining bibliometric and patent analysis

description: This data set contains literature and patent data about sodium-ion batteries to analyze the technical trends and geographical distribution of sodium-ion battery technology.
DOI: 10.17632/fmj8z7942n
title: History of Acne is Associated with New-Onset Acne Development in Patients with Alopecia Areata Treated with JAK Inhibitors Supplemental Materials

description: Supplemental Table 1. Univariate Odds Ratios for Acne Development During JAKi Treatment in Patients with No Acne at Start of JAKi (n=34)
DOI: 10.17632/w2k76w467w
title: The Role of Color in the Perception of 3D shape

description: Maxwell Scene Files *.mxs
3D surface geometry *.obj
Lightmap *.hdr
Code used to simulate sub-surface scattering *.m
Psychophysical Data *.xlcx
DOI: 10.6084/m9.figshare.13204379.v1
title: peerj-30209-lacunae_nOVH_and_OVH_for_stats (1).xlsx

description: lacunae volume in ovariectomized vs intact rats
DOI: 10.6084/m9.figshare.13633928.v3
title: Replicability of Experimental Tool Evaluations in Model-Based Software and Systems Engineering with MATLAB/Simulink

description: If you are also interested in open science for Simulink, please answer our 5-10 min survey, to help you get Simulink models you need: https://forms.gle/as3Jww5LSEE5pSYW8 <br> This replication package is supplied for the paper "Replicability of Experimental Tool Evaluations in Model-Based Software and Systems Engineering with MATLAB/Simulink". This comes with the four parts:<br> <br> I Models, which we found in "models"<br> II SPSS files of basic statistics in "spss"<br> III Matlab + python scripts for analyzing models in "SimuCompAnalysis"<br> IV Raw data and spread sheets of our literature review in "raw_data"<br> <br> A concrete Readme is contained in the .zip file.
DOI: 10.6084/m9.figshare.2056227.v1
title: Data files for downstream analysis of the “mammalian codon usage” manuscript

description: Snapshot of the data used to run downstream analysis. A detailed methods description can be found in the manuscript and the associated analysis code.
DOI: 10.6084/m9.figshare.26103277.v1
title: Rogersetal_TP_dataforpublication_v20240626.csv

description: Water and nutrient augmentation stimulate post-fire photosynthesis.
DOI: 10.6084/m9.figshare.8678483.v1
title: Source file for all images (p53-Fbw7a)

description: Raw data of the paper on the degradation of p53 by Fbw7a
DOI: 10.17632/4bjhfpvrw4
title: Supplementary material: Doppler ultrasound, blood flow, portal vein, milk vein, body condition, dairy cows

description: This dataset contains supplemental material to the research article: "Colour Doppler study of blood flow in the portal vein in relation to blood flow in the milk vein, milk yield and body condition of dairy cows during dry period and lactation".

Dataset contents explained:

1. Portal Vein Blood FLow (.avi) - video of color Doppler examination of blood flow in the portal vein of dairy cows

2. Table 3 (.pdf) - Descriptive statistics of milk vein blood flow volume (MV_BFVol), body condition score (BCS), backfat thickness (BFT) and heart girth (HG) circumference of the dairy cows included in the study, stratified by production stage (late lactation, dry period, early lactation).

3. Tables 4, 5, 6 (.pdf): Ingredients, chemical composition and nutritive value of the total mixed rations provided for the: High Lactation, Low Lactation, and Close-Up (dry period) groups.

4. Fig. 6 (.tiff) - Cross Sectional Area (CSA) of the portal vein: Changes throughout the study period: starting from 7 days before the dry period (“DP”), throughout the DP, 7 and 3 days prior to calving, at calving (“C”) and from the 3rd to the 90th day in the new lactation (“DIM”: days in milk). 

5. Fig. 7 (.tiff) - Diameter of the Portal Vein: Changes throughout the study period: starting from 7 days before the dry period (“DP”), throughout the DP, 7 and 3 days prior to calving, at calving (“C”) and from the 3rd to the 90th day in the new lactation (“DIM”: days in milk). 

6. Fig. 8 (.tiff) - Distance of the Portal Vein from skin surface: Changes throughout the study period: starting from 7 days before the dry period (“DP”), throughout the DP, 7 and 3 days prior to calving, at calving (“C”) and from the 3rd to the 90th day in the new lactation (“DIM”: days in milk). 

7. BFT example (.bmp) - B-mode ultrasound measurement of backfat thickness of a dairy cow (according to Schroeder and Staufenbiel, 2006)

8. Power Analyses (a-priori and post-hoc) (.pdf)
DOI: 10.17632/hkbgh5s3b7
title: MH-SoyaHealthVision: An Indian UAV and Leaf Image Dataset for Integrated Crop Health Assessment

description: MH-SoyaHealthVision is a comprehensive dataset developed for integrated crop health assessment in soybean farming. It combines ground-level leaf images and UAV-captured images from soyabean fields of Maharashtra region, enabling a holistic approach towards disease and pest attack detection. The leaf image dataset includes high-resolution visuals of soybean leaves affected by diseases such as rust, mosaic virus, septoria brown spot, and frog-eye leaf spot, along with pest damage caused by caterpillars and semiloopers. Complementing this, the UAV dataset provides large-scale aerial perspectives of soybean fields, capturing patterns of rust, mosaic virus, and pest attack infestations.
The inclusion of UAV technology in this dataset is crucial for precision agriculture, as drones facilitate highly accurate, targeted spraying of pesticides. The combined approaches of ground-level and aerial imagery make MH-SoyaHealthVision a valuable resource for developing machine learning and deep learning models for disease detection and classification. This dataset aims to contribute towards improved crop health monitoring, enabling early intervention strategies and enhancing productivity in soybean farming.
The dataset comprises a total of 5,680 images, divided into two parts:
First part includes Soybean Leaf Image Dataset, categorized into six folders out of which one is"Healthy," next four representing different types of diseases, and last is of pest attack.
Second part includes Soybean UAV Image Dataset, categorized into four folders out of which one is "Healthy," two folders representing diseases, and remaining one for pest attack.
DOI: 10.6084/m9.figshare.19243749.v1
title: Environmental thresholds in the functional mycobiome of global drylands

description: <b>alpha_rf.csv = </b>outputs from Random Forest analysis<b><br></b><b><br></b><b>Codes.txt = </b>codes used for statistical analysis and environmental modelling<br><b>FungalTraits_assignment.csv = </b>assignment of fungal traits for each genus<br><br><b>FungalTraits_relative_abundance.csv = </b>relative abundance of each functional group across the dataset<br><br><b>Metadata.csv = </b>metadata<br>
DOI: 10.6084/m9.figshare.25437115.v5
title: <b>Clinical and pathological characteristics of Blastoid mantle cell lymphoma: a single institution experience</b>

description: Blastoid mantle cell lymphoma (B-MCL) is a rare aggressive lymphoma. It is characterized by blastoid morphology with high proliferation and inconsistent immunohistochemistry (IHC), making it a diagnostic challenge for the pathologist.This is a retrospective analytical cohort study. We reviewed biopsy confirmed cases of B-MCL diagnosed over a period of 10 years. The clinical presentation, histopathological and IHC findings, treatment received, and survival outcomes were studied. Randomly selected cases of classic MCL (N=12), diagnosed during the same period served as controls.
DOI: 10.6084/m9.figshare.27939927.v1
title: Structural Annotation

description: Gene models predicted from <i>Laternula elliptica</i> genome using BRAKER.
DOI: 10.6084/m9.figshare.28929926.v1
title: Teacher humor and the mediating role of socio-emotional factors on emotional and motivational outcomes

description: We studied the longitudinal effects of different types of teacher humor and the mediating role of socio-emotional factors on emotional and motivational outcomes at high schools.
DOI: 10.6084/m9.figshare.3514253.v1
title: Appendix C. Neighbor-joining bootstrapped dendograms of the mitochondrial 16S gene constructed using the Jukes Cantor correction.

description: Neighbor-joining bootstrapped dendograms of the mitochondrial 16S gene constructed using the Jukes Cantor correction.
DOI: 10.6084/m9.figshare.5173153.v1
title: Supplementary Material for: Lysophosphatidylcholine Acyltransferase-3 Expression Is Associated with Atherosclerosis Progression

description: Free arachidonic acid (AA) is an important precursor of lipid mediators such as leukotrienes and prostaglandins that induces inflammation and is associated with atherosclerosis progression. Recent studies have shown that lysophosphatidylcholine acyltransferase-3 (LPCAT3) converts lysophosphatidylcholine (LPC) and free AA into phosphatidylcholine (PC)-containing AA (arachidonyl-PC) and thereby can regulate intracellular free-AA levels. However, the association between LPCAT3 and atherosclerosis remains to be established. In this study, we analyzed human and mouse atherosclerotic tissues to gain insight into the arachidonyl-PC metabolism involving LPCAT3 using imaging mass spectrometry. The data revealed a complementary distribution of arachidonyl-PC and LPC in human atherosclerotic tissues with arachidonyl-PC decreasing and LPC increasing as atherosclerosis progressed. Furthermore, we found a homologous distribution of LPCAT3 expression and arachidonyl-PC based on atherosclerotic progression. In contrast, in ApoE-deficient mice, atherosclerosis increased both arachidonyl-PC accumulation and LPCAT3 expression. Taken together, these findings suggest that the regulation of LPCAT3 expression might be associated with atherosclerotic progression in humans.
DOI: 10.6084/m9.figshare.19582444.v1
title: Additional file 15 of High activity and high functional connectivity are mutually exclusive in resting state zebrafish and human brains

description: Additional file 15. Table S1.
DOI: 10.6084/m9.figshare.21811404.v1
title: Data Repository: Gendered Representations of Person Referents activated by the Nonbinary Gender Star in German: A Word-Picture Matching Task

description: This is a full repository for all the materials, data and code used for the publication: <br> Gendered Representations of Person Referents activated by the Nonbinary Gender Star in German: A Word-Picture Matching Task. (in revision) <br> Please download the .zip-folder. Then follow the instructions in the READ_ME-document on how to use the repository.
DOI: 10.6084/m9.figshare.12821636.v1
title: Data & Code: Phylogenetically conserved host traits and local abiotic conditions jointly drive the geography of parasite intensity

description: Data & Code to reproduce the statistical analyses and plots for "Phylogenetically conserved host traits and local abiotic conditions jointly drive the geography of parasite intensity" by D. LoScerbo, M.J. Farrell, J. Arrowsmith, J. Mlynarek, JP Lessard<br>Supplement includes rescoures to reproduce analyses, and the full posteriors of all models saved as .rds files.
DOI: 10.6084/m9.figshare.25093376.v2
title: Brasenia schreberi predicted genes

description: Draft genome of Brasenia schreberi, a worldwide distributed and endangered aquatic plant
DOI: 10.6084/m9.figshare.29090081.v2
title: Shipping noise tolerance in invertebrates: A case study of the shore crab <i>Hemigrapsus oregonensis</i>

description: <br><br>Data supporting Birch et al. "Shipping noise tolerance in invertebrates: A case study of the shore crab <i>Hemigrapsus oregonensis</i>"
DOI: 10.6084/m9.figshare.7034789.v2
title: MatPa_Final_ok.rdata

description: p { margin-bottom: 0.25cm; line-height: 120%; }a:link { color: rgb(0, 0, 255); }


Species
data were obtained from the Ocean Biogeographic Information System
(OBIS, http://www.iobis.org)
on 08/27/2014. We inventoried 16 238 200 occurrence records from
34.883 entries. We cleaned the data by identifying the synonyms,
misspellings and rare species (only one occurrence) and by
restraining it to species present in the marine environment according
to FishBase (<i>12</i>).
Synonyms were converted to accepted names. This resulted in a set of
11,503,257 occurrences for 11,345 fish species around the world. We
considered the entire occurrences available in the OBIS database
spanning from 1826 to 2013 as the occurrences inferior to 1950
represent solely 0.28% of the entire data set .We reconstructed
distribution maps for each species, defined as the convex polygon
surrounding the area where each species was observed. The resulting
polygon was divided into four parts across the world to integrate
possible discontinuity between the two hemispheres and the Atlantic
and Pacific Oceans. Then we refined each species distribution map by
removing areas where maximal depths fell outside the minimum or
maximum known depth range of the species (<i>12</i>).
Final distribution maps of well-known species were checked visually
and reviewed by the authors according to their expertise.
DOI: 10.6084/m9.figshare.9577364.v2
title: Unit measurements from Migratory convergence facilitates cultural transmission of humpback whale song.

description: All unit measurements used in the study.
DOI: 10.6084/m9.figshare.22756712.v1
title: MASTER TABLE OF WOUND HEALING OF SECTIO CAESAREA IN RATS.xlsx

description: Sectio Caesarea is delivery that makes an incision in the abdominal and uterine walls an incision, intact and carries several risks. Administration of trigona honey given twice daily was more effective in accelerating the wound healing process than 50% and 75% turmeric extract gel. Original Trigona honey is potential in post sectio secarea wound healing.
DOI: 10.6084/m9.figshare.29143658.v1
title: The global occurrence records of <i>Conyza sumatrensis</i> were compiled after removing errors and applying a 2.5 arc-minute (~5 km) distance threshold filter before the year of 2025

description: The occurrence records of <i>Conyza sumatrensis</i> were collected from the Global Biodiversity Information Facility (GBIF.org 2025), iNaturalist (iNaturalist community 2025), Atlas of Living Australia (ALA 2025), Botanical Information and Ecology Network (Maitner et al. 2018), literature records (Dong Hui 2019), and our fieldwork from the Guizhou Province of Southwest China. Due to the potential inaccuracies in occurrence records from public databases (Maldonado et al. 2015), we removed coordinate errors using the R package (version 4.4.0) ‘CoordinateCleaner’ (Zizka et al. 2019, R Core Team 2024). Specifically, we removed: (1) records of incomplete geographic coordinates, duplicate coordinates, zero coordinates, and equal latitude and longitude; (2) records of coordinates in the sea, country centroids, and province centroids; (3) records that do not align with the specified country; (4) records based on fossils, tissue samples, and living collections; (5) records before 1950, since their georeferencing are often imprecise; and (6) records with coordinate precisions of less than 1000 m. In addition, biological collections often exhibit geographic sampling biases, potentially resulting in an overrepresentation of specific environmental conditions (Boria et al. 2014, Oliveira et al. 2016, Daru et al. 2018). We spatially filtered the species occurrence data using a distance threshold of 2.5 arc-minutes (~ 5 km) to reduce spatial autocorrelation. Therefore, approximately 95.7% of the records were removed, leaving 10,510 occurrence records for analysis.<br>
DOI: 10.6084/m9.figshare.5027741.v1
title: Kinect joint dataset

description: Joint dataset
DOI: 10.17632/ffw8zbdmpm
title: E-SMAP: Evaporation-Soil Moisture Active Passive

description: This is an observationally-based dataset of soil evaporation for the conterminous U.S. (CONUS), gridded to a 9 km resolution for the time-period of April 2015-March 2019. This product (Evaporation-Soil Moisture Active Passive; E-SMAP) represents soil evaporation from the surface layer, defined by the SMAP sensing depth of 50 mm, during SMAP overpass intervals that are screened using precipitation and SMAP quality control flags. Soil evaporation is calculated through an estimated water balance of the surface soil, which we show is largely dominated by SMAP-observed soil drying. E-SMAP soil evaporation is on average 0.72 mm day-1, which falls within the range of soil evaporation estimates (0.17-0.89 mm day-1) derived from operational land surface models and an alternative remote sensing product that are used for comparison (Abolafia-Rosenzweig et al., in review). E-SMAP is independent from existing soil evaporation estimates and therefore has the potential to improve understanding of evapotranspiration partitioning and model development. 
Moisture flux estimates in the E-SMAP dataset represent the average flux over the interval and are reported at the mid-date of respective intervals. The E-SMAP dataset may be used to estimate soil evaporation over a time period of months or years. However, soil evaporation estimates at individual time steps should be used with caution because unbiased uncertainty in observed drying rates from the SMAP satellite will introduce noise into shorter-interval estimates. 
All scripts used to create and assess this dataset are accessible here: https://github.com/ronzoni9675/ESMAP/.
DOI: 10.6084/m9.figshare.29135876.v1
title: The remote sensing data used in our study

description: In our research, the experimental data include the following types: Sentinel-2 MSI L1C data, Copernicus GLO-30 DEM data, and field soil sampling data. Among these, the Sentinel-2 MSI data is L1C level and can be accessed from the official website of the European Space Agency (ESA) at https://dataspace.copernicus.eu/explore-data/data-collections/sentinel-data/sentinel-2. The Copernicus GLO-30 DEM data can be obtained from ESA's official platform at https://panda.copernicus.eu/panda. The field soil sampling data were collected by our research team and can be made available from the corresponding author upon reasonable request.
DOI: 10.60893/figshare.sss.27913191.v1
title: 01988-17

description: Hg MNO S KLL
DOI: 10.6084/m9.figshare.16989445.v1
title: AntiDepResponse2021

description: GWAS summary statistics from the Psychiatric Genomics Consortium (PGC)
DOI: 10.6084/m9.figshare.27290102.v1
title: Data file from Mitochondrial efficiency impacts nocturnal sheltering in juvenile salmon (Salmo salar), affecting the tradeoff between foraging and predation risk

description: Shelter Mitos - Supplemental Materials 2 - R1.csv
DOI: 10.17632/4kc36yjhdy
title: Giant Mud Crab Molting Visual Dataset

description: This dataset contains images of Giant Mud Crab growth before molting. This data is time series data that shows the growth of several crabs before it molts. The data is collected as a basis to develop an AI model that can predict the time to molt of a crab, especially Giant Mud Crab species (Scylla Serrata). The hypothesis for this data collection is that the time of a crab molting can be predicted by observing the visual cue (e.g. growth of limbs) that exist on the crab. The dataset contains image of 6 different crab that taken at the same time periods. The crab have different molting time, so the dataset has include the time-to-molt data for each image, that show how long the crab in the picture will molt. The dataset is gathered on November 2024 at a vertical crab farm in Surabaya, Indonesia.
DOI: 10.17632/md85gzkmg9
title: Plot data for Global environmental implications of atmospheric methane removal through chlorine-mediated chemistry-climate interactions

description: Plot data for the paper by Li Q. et al., Global environmental implications of atmospheric methane removal through chlorine-mediated chemistry-climate interactions. Nature Comm.
DOI: 10.17632/v26fwnttz2
title: LINF_170009200

description: Zinc finger (RING-type)-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.21961589.v1
title: Data_Fire regime in PBR.xlsx

description: This data contain the information extracted from MODIS related to fire extends in Pendjari Biosphere Reserve
DOI: 10.17632/5sywh8knxd
title: Understanding locomotion in trilobites by means of three-dimensional models

description: Blender files configurated for several locomotion simulators which allow the user to create different virtual traces by changing different parameters such as the size and shape (i.e. body structure) of the trace maker. Six files with different configurations are provided here. The user can also change the parameters of the metachronal wave controlling the trilobite gait.
Download Blender (https://www.blender.org) and set up the add-on animations nodes (https://animation-nodes.com) to visualize the results:
BF1-Placoparia; BF2-Illaenus; BF3-Megistaspis; BF4-Tetraspis; BF5-Lonchodomas and BF6-Eccaparadoxides. BF1-BF5 are based on 3D models, the latter (BF6) is configured using 2D measurements. 

Videos:
Video S1. Description of the locomotion model
Video S2. Locomotion modelling in Placoparia cambriensis showing different gaits according to the wave number (k).
Video S3. Locomotion modelling in Placoparia cambriensis showing the virtual traces according to different wave numbers (k).
Video S4. Locomotion and V-set pattern in Placoparia cambriensis
DOI: 10.6084/m9.figshare.25625352.v2
title: NEONForestAGBv2

description: Aboveground biomass (AGB) estimates from individual tree diameters scaled to whole tree biomass using generalized allometric equations for 35 National Ecological Observatory Network (NEON) sites within the United States and Puerto Rico. The data set includes 93,971 unique individuals of 478 different species in 1,216 terrestrial observation plots for 245,245 biomass estimates between the years 2014 to 2023. See https://github.com/atkinsjeff/NEONForestAGB for more detailed information.