cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12993070
title: Redescription and Phylogenetic Assessment of ‘<i>Prognathodon</i>’ <i>Stadtmani</i>: Implications for Globidensini Monophyly and Character Homology in Mosasaurinae

description: <i>Prognathodon stadtmani</i> was discovered in the Campanian portion of the Upper Cretaceous Mancos Shale in western Colorado in 1975. Following its original description almost two decades ago, more material of the holotype was prepared. Those new elements include a quadrate, often considered one of the most critical bones for understanding mosasaur systematics, portions of the skull roof, posterior mandible, and braincase. <i>Prognathodon stadtmani</i> exhibits a suite of features that include both derived character states observed in later mosasaurines and primitive features present in earlier members of the clade, such as <i>Clidastes.</i> Although the quadrate resembles those of <i>Prognathodon</i> and <i>Globidens</i> in some respects, it lacks fusion between the suprastapedial process and ascending tympanic rim observed in those taxa. I ran a series of phylogenetic analyses using parsimony and Bayesian inference to understand the relationships of this taxon. Regardless of character selection or methodology, ‘<i>Prognathodon</i>’ <i>stadtmani</i> was not found to be monophyletic with the rest of the genus <i>Prognathodon</i>. Depending on method, it was recovered as the sister taxon to the rest of Globidensini, the sister taxon to Mosasaurini + <i>Globidens</i>, or an early diverging mosasaurine outside of both Globidensini and Mosasaurini. Owing to these results, I assign the type to a new genus, <i>Gnathomortis</i>, gen. nov., yielding the species <i>Gnathomortis stadtmani</i>, comb. nov. Furthermore, the rest of the genus <i>Prognathodon</i> and the clade Globidensini more broadly were not consistently recovered as monophyletic. Many characters of the quadrate and the dentition that typically united those clades are optimized as homoplastic based on my resulting topologies.
DOI: 10.6084/m9.figshare.12993070.v1
title: Redescription and phylogenetic assessment of ‘<i>Prognathodon</i>’ <i>stadtmani</i>: implications for Globidensini monophyly and character homology in Mosasaurinae

description: <i>Prognathodon stadtmani</i> was discovered in the Campanian portion of the Upper Cretaceous Mancos Shale in western Colorado in 1975. Following its original description almost two decades ago, more material of the holotype was prepared. Those new elements include a quadrate, often considered one of the most critical bones for understanding mosasaur systematics, portions of the skull roof, posterior mandible, and braincase. <i>Prognathodon stadtmani</i> exhibits a suite of features that include both derived character states observed in later mosasaurines and primitive features present in earlier members of the clade, such as <i>Clidastes.</i> Although the quadrate resembles those of <i>Prognathodon</i> and <i>Globidens</i> in some respects, it lacks fusion between the suprastapedial process and ascending tympanic rim observed in those taxa. I ran a series of phylogenetic analyses using parsimony and Bayesian inference to understand the relationships of this taxon. Regardless of character selection or methodology, ‘<i>Prognathodon</i>’ <i>stadtmani</i> was not found to be monophyletic with the rest of the genus <i>Prognathodon</i>. Depending on method, it was recovered as the sister taxon to the rest of Globidensini, the sister taxon to Mosasaurini + <i>Globidens</i>, or an early diverging mosasaurine outside of both Globidensini and Mosasaurini. Owing to these results, I assign the type to a new genus, <i>Gnathomortis</i>, gen. nov., yielding the species <i>Gnathomortis stadtmani</i>, comb. nov. Furthermore, the rest of the genus <i>Prognathodon</i> and the clade Globidensini more broadly were not consistently recovered as monophyletic. Many characters of the quadrate and the dentition that typically united those clades are optimized as homoplastic based on my resulting topologies.
DOI: 10.6084/m9.figshare.12993070.v2
title: Redescription and Phylogenetic Assessment of ‘<i>Prognathodon</i>’ <i>Stadtmani</i>: Implications for Globidensini Monophyly and Character Homology in Mosasaurinae

description: <i>Prognathodon stadtmani</i> was discovered in the Campanian portion of the Upper Cretaceous Mancos Shale in western Colorado in 1975. Following its original description almost two decades ago, more material of the holotype was prepared. Those new elements include a quadrate, often considered one of the most critical bones for understanding mosasaur systematics, portions of the skull roof, posterior mandible, and braincase. <i>Prognathodon stadtmani</i> exhibits a suite of features that include both derived character states observed in later mosasaurines and primitive features present in earlier members of the clade, such as <i>Clidastes.</i> Although the quadrate resembles those of <i>Prognathodon</i> and <i>Globidens</i> in some respects, it lacks fusion between the suprastapedial process and ascending tympanic rim observed in those taxa. I ran a series of phylogenetic analyses using parsimony and Bayesian inference to understand the relationships of this taxon. Regardless of character selection or methodology, ‘<i>Prognathodon</i>’ <i>stadtmani</i> was not found to be monophyletic with the rest of the genus <i>Prognathodon</i>. Depending on method, it was recovered as the sister taxon to the rest of Globidensini, the sister taxon to Mosasaurini + <i>Globidens</i>, or an early diverging mosasaurine outside of both Globidensini and Mosasaurini. Owing to these results, I assign the type to a new genus, <i>Gnathomortis</i>, gen. nov., yielding the species <i>Gnathomortis stadtmani</i>, comb. nov. Furthermore, the rest of the genus <i>Prognathodon</i> and the clade Globidensini more broadly were not consistently recovered as monophyletic. Many characters of the quadrate and the dentition that typically united those clades are optimized as homoplastic based on my resulting topologies.
DOI: 10.6084/m9.figshare.12927798.v1
title: Radiation and divergence times of Batoidea

description: We present a time-scaled analysis based on morphological characters to estimate the divergence ages for the major batoid clades. Two approaches were used: tip-dating, which allows the extinct taxa to be included as terminals, assessing the phylogenetic relations and their divergence time simultaneously; and basic and minimum branch length (‘a posteriori’ methods) that date a pre-existing unscaled topology, given a set of stratigraphic data for the taxa involved. We used stratigraphic indexes to compare the divergence ages recovered by both methods. The tip-dating approach obtained a more resolved topology and slightly better stratigraphic index scores than the other methods. Overall the tip-dating analysis recovered slightly earlier divergence ages than the rest of the time dating analyses and the known fossil record of the groups. However, these divergence ages were not as old as those estimated by molecular analysis. Our results suggest the diversity increase through the Late Jurassic–Early Cretaceous might not be gradual, and that Early Cretaceous diversity could be significantly higher. As several divergence events are placed in the Early Cretaceous, there is a suggestion that an active period of cladogenesis leads to the Late Cretaceous high diversity. The last divergence events recovered by the present analysis occurred in the Paleogene and led to the extant groups of batoids.
DOI: 10.6084/m9.figshare.13026422.v1
title: Osteology of the Wide-Hipped Titanosaurian Sauropod Dinosaur <i>Savannasaurus Elliottorum</i> from the Upper Cretaceous Winton Formation of Queensland, Australia

description: The titanosaurian sauropod dinosaur <i>Savannasaurus elliottorum</i> is represented by a partial postcranial skeleton from the lower Upper Cretaceous (Cenomanian–lowermost Turonian) Winton Formation of Queensland, northeast Australia. Here, we present a detailed description of this specimen, as well as an emended diagnosis for this titanosaur. <i>Savannasaurus elliottorum</i> displays numerous character states that are generally regarded as plesiomorphic for Titanosauria, as well as several traits that are often regarded as apomorphic of that clade or a less inclusive subset thereof. Several features of <i>Savannasaurus</i> support a close relationship with the coeval <i>Diamantinasaurus matildae</i>, and this clade appears to occupy an early-branching position within Titanosauria. Relative to body size, the thoracic and abdominal breadth of <i>Savannasaurus</i> is greater than that seen in giant titanosaurs such as the contemporaneous South American lognkosaurians; however, this relative breadth is not quite as extreme as that of the small-bodied latest Cretaceous saltasaurines, or <i>Opisthocoelicaudia skarzynskii</i>. The possible advantages engendered by the barrel-shaped thorax, robust limbs, wide-gauge gait, and lack of hyposphene-hypantrum articulations are explored, and it is hypothesized that these traits were positively selected by the wet, temperate floodplain environment in which <i>Savannasaurus</i> lived. Greater stability and flexibility might have reduced the risk of bogging, and/or facilitated more expedient self-extraction from muddy waterholes. Similar environmental pressures acting upon other titanosaurian taxa or clades elsewhere might have led to the repeated independent development, or accentuation, of the bauplan regarded as ‘typical’ for the clade Titanosauria. This would explain the many observed convergences between <i>Savannasaurus</i> and <i>Diamantinasaurus</i>, and Saltasauridae.
DOI: 10.6084/m9.figshare.20473299
title: Developments in smoking cessation interventions for patients with chronic obstructive pulmonary disease in the past 5 years: a scoping review

description: Smoking cessation is the most effective strategy for slowing the progression of chronic obstructive pulmonary disease (COPD). However, COPD patients find it difficult to quit smoking with standard cessation interventions. A scoping review of smoking cessation for COPD patients was conducted by searching the MEDLINE, Embase, and Cochrane Library databases for all studies published between 1 January 2016 and 22 September 2021. Four themes were set up and 47 studies were included eventually. The majority of the included studies (61.7%, 29/47) investigated efficacy and effectiveness, including new strategies for extended treatment and mobile health (mHealth) delivery approach. Studies examining accessibility and utilization (31.9%, 15/47), safety (10.6%, 5/47), and health economics (6.4%, 3/47) were also reviewed. The quality of the included randomized controlled trials was also evaluated. Pharmacotherapy combined with behavioral interventions delivered via mHealth may be a promising strategy to help COPD smokers quit. However, the overall quality of the current studies is poor, making it challenging for clinicians to make informed decisions. Future high-quality studies are needed to provide conclusive evidence on the optimal pharmacotherapies and the most cost-effective comprehensive smoking cessation interventions, particularly those integrated into disease management for smokers with COPD.
DOI: 10.6084/m9.figshare.20473299.v1
title: Developments in smoking cessation interventions for patients with chronic obstructive pulmonary disease in the past 5 years: a scoping review

description: Smoking cessation is the most effective strategy for slowing the progression of chronic obstructive pulmonary disease (COPD). However, COPD patients find it difficult to quit smoking with standard cessation interventions. A scoping review of smoking cessation for COPD patients was conducted by searching the MEDLINE, Embase, and Cochrane Library databases for all studies published between 1 January 2016 and 22 September 2021. Four themes were set up and 47 studies were included eventually. The majority of the included studies (61.7%, 29/47) investigated efficacy and effectiveness, including new strategies for extended treatment and mobile health (mHealth) delivery approach. Studies examining accessibility and utilization (31.9%, 15/47), safety (10.6%, 5/47), and health economics (6.4%, 3/47) were also reviewed. The quality of the included randomized controlled trials was also evaluated. Pharmacotherapy combined with behavioral interventions delivered via mHealth may be a promising strategy to help COPD smokers quit. However, the overall quality of the current studies is poor, making it challenging for clinicians to make informed decisions. Future high-quality studies are needed to provide conclusive evidence on the optimal pharmacotherapies and the most cost-effective comprehensive smoking cessation interventions, particularly those integrated into disease management for smokers with COPD.
DOI: 10.6084/m9.figshare.19424844
title: Additional file 2 of Genome-wide identification and comparative analysis of the PYL gene family in eight Rosaceae species and expression analysis of seeds germination in pear

description: Additional file 2.
DOI: 10.6084/m9.figshare.19424844.v1
title: Additional file 2 of Genome-wide identification and comparative analysis of the PYL gene family in eight Rosaceae species and expression analysis of seeds germination in pear

description: Additional file 2.
DOI: 10.6084/m9.figshare.19424847
title: Additional file 3 of Genome-wide identification and comparative analysis of the PYL gene family in eight Rosaceae species and expression analysis of seeds germination in pear

description: Additional file 3.
DOI: 10.6084/m9.figshare.19424847.v1
title: Additional file 3 of Genome-wide identification and comparative analysis of the PYL gene family in eight Rosaceae species and expression analysis of seeds germination in pear

description: Additional file 3.
DOI: 10.6084/m9.figshare.19424850
title: Additional file 4 of Genome-wide identification and comparative analysis of the PYL gene family in eight Rosaceae species and expression analysis of seeds germination in pear

description: Additional file 4.
DOI: 10.6084/m9.figshare.19424850.v1
title: Additional file 4 of Genome-wide identification and comparative analysis of the PYL gene family in eight Rosaceae species and expression analysis of seeds germination in pear

description: Additional file 4.
DOI: 10.6084/m9.figshare.19424853
title: Additional file 5 of Genome-wide identification and comparative analysis of the PYL gene family in eight Rosaceae species and expression analysis of seeds germination in pear

description: Additional file 5.
DOI: 10.6084/m9.figshare.19424853.v1
title: Additional file 5 of Genome-wide identification and comparative analysis of the PYL gene family in eight Rosaceae species and expression analysis of seeds germination in pear

description: Additional file 5.
DOI: 10.6084/m9.figshare.19424856
title: Additional file 6 of Genome-wide identification and comparative analysis of the PYL gene family in eight Rosaceae species and expression analysis of seeds germination in pear

description: Additional file 6.
DOI: 10.6084/m9.figshare.19424856.v1
title: Additional file 6 of Genome-wide identification and comparative analysis of the PYL gene family in eight Rosaceae species and expression analysis of seeds germination in pear

description: Additional file 6.
DOI: 10.6084/m9.figshare.19424892
title: Additional file 1 of Impaired AT2 to AT1 cell transition in PM2.5-induced mouse model of chronic obstructive pulmonary disease

description: Additional file 1. Alveolar maintain phase RNA-seq, include RNA sequencing data of alveolar organoids in maintain phase.
DOI: 10.6084/m9.figshare.19424892.v1
title: Additional file 1 of Impaired AT2 to AT1 cell transition in PM2.5-induced mouse model of chronic obstructive pulmonary disease

description: Additional file 1. Alveolar maintain phase RNA-seq, include RNA sequencing data of alveolar organoids in maintain phase.
DOI: 10.6084/m9.figshare.19424874
title: Additional file 1 of The clinical applicability of percutaneous splenic vein stent implantation for pancreatic portal hypertension

description: Additional file 1. Changes of platelet count and spleen volume of each patient.
DOI: 10.6084/m9.figshare.19424874.v1
title: Additional file 1 of The clinical applicability of percutaneous splenic vein stent implantation for pancreatic portal hypertension

description: Additional file 1. Changes of platelet count and spleen volume of each patient.
DOI: 10.6084/m9.figshare.19424880
title: Additional file 2 of The clinical applicability of percutaneous splenic vein stent implantation for pancreatic portal hypertension

description: Additional file 2. General information of each patient.
DOI: 10.6084/m9.figshare.19424880.v1
title: Additional file 2 of The clinical applicability of percutaneous splenic vein stent implantation for pancreatic portal hypertension

description: Additional file 2. General information of each patient.
DOI: 10.24403/jp.1341889
title: Kritische Revision der "Thlaspi"-Arten Europas, Afrikas und Vorderasiens. Spezieller Teil : III) Microthlaspi / Friedrich Karl Meyer
DOI: 10.24403/jp.1341898
title: Kritische Revision der "Thlaspi”-Arten Europas, Afrikas und Vorderasiens. Spezieller Teil : IV) Thlaspiceras / Friedrich Karl Meyer
DOI: 10.6084/m9.figshare.19424895
title: Additional file 2 of Impaired AT2 to AT1 cell transition in PM2.5-induced mouse model of chronic obstructive pulmonary disease

description: Additional file 2. Alveolar differentiation phase RNA-seq, include RNA sequencing data of alveolar organoids in differentiation phase.
DOI: 10.6084/m9.figshare.19424895.v1
title: Additional file 2 of Impaired AT2 to AT1 cell transition in PM2.5-induced mouse model of chronic obstructive pulmonary disease

description: Additional file 2. Alveolar differentiation phase RNA-seq, include RNA sequencing data of alveolar organoids in differentiation phase.
DOI: 10.6084/m9.figshare.19424898
title: Additional file 3 of Impaired AT2 to AT1 cell transition in PM2.5-induced mouse model of chronic obstructive pulmonary disease

description: Additional file 3. List of 1318 genes, include gene names of 1318 genes that were down-regulated in maintain & differentiation phases in alveolar organoids after PM2.5 exposure.
DOI: 10.6084/m9.figshare.19424898.v1
title: Additional file 3 of Impaired AT2 to AT1 cell transition in PM2.5-induced mouse model of chronic obstructive pulmonary disease

description: Additional file 3. List of 1318 genes, include gene names of 1318 genes that were down-regulated in maintain & differentiation phases in alveolar organoids after PM2.5 exposure.
DOI: 10.6084/m9.figshare.21522085
title: Additional file 10 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 10: Table S9. DDPs among different tissues in mouse.
DOI: 10.6084/m9.figshare.21522085.v1
title: Additional file 10 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 10: Table S9. DDPs among different tissues in mouse.
DOI: 10.6084/m9.figshare.21522088
title: Additional file 11 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 11: Table S10. Expression level of human DDPs in developmental transcriptome.
DOI: 10.6084/m9.figshare.21522088.v1
title: Additional file 11 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 11: Table S10. Expression level of human DDPs in developmental transcriptome.
DOI: 10.6084/m9.figshare.19424934
title: Additional file 8 of A comparison of transcriptome analysis methods with reference genome

description: Additional file 8.
DOI: 10.6084/m9.figshare.19424937
title: Additional file 9 of A comparison of transcriptome analysis methods with reference genome

description: Additional file 9.
DOI: 10.6084/m9.figshare.21522091
title: Additional file 12 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 12: Table S11. Expression level of human DDPs in GTEx project.
DOI: 10.6084/m9.figshare.21522091.v1
title: Additional file 12 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 12: Table S11. Expression level of human DDPs in GTEx project.
DOI: 10.6084/m9.figshare.19424937.v1
title: Additional file 9 of A comparison of transcriptome analysis methods with reference genome

description: Additional file 9.
DOI: 10.6084/m9.figshare.21522094
title: Additional file 13 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 13: Table S12. Expression level of human DDPs in a dataset of 32 human adult tissues.
DOI: 10.6084/m9.figshare.21522094.v1
title: Additional file 13 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 13: Table S12. Expression level of human DDPs in a dataset of 32 human adult tissues.
DOI: 10.6084/m9.figshare.21522097
title: Additional file 14 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 14: Table S13. Expression level of mouse DDPs in developmental transcriptome.
DOI: 10.6084/m9.figshare.21522097.v1
title: Additional file 14 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 14: Table S13. Expression level of mouse DDPs in developmental transcriptome.
DOI: 10.6084/m9.figshare.21522100
title: Additional file 15 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 15: Table S14. Expression level of mouse DDPs in ENCODE project.
DOI: 10.6084/m9.figshare.21522100.v1
title: Additional file 15 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 15: Table S14. Expression level of mouse DDPs in ENCODE project.
DOI: 10.6084/m9.figshare.21522109
title: Additional file 2 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 2: Table S1. The generation and enter of pseudogenes on X chromosome and autosomes.
DOI: 10.6084/m9.figshare.21522109.v1
title: Additional file 2 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 2: Table S1. The generation and enter of pseudogenes on X chromosome and autosomes.
DOI: 10.6084/m9.figshare.21522112
title: Additional file 3 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 3: Table S2. The list for pseudogenes that were detected by PacBio sequencing.
DOI: 10.6084/m9.figshare.21522112.v1
title: Additional file 3 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 3: Table S2. The list for pseudogenes that were detected by PacBio sequencing.
DOI: 10.6084/m9.figshare.21522115
title: Additional file 4 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 4: Table S3. Co-expression pair between pseudogenes and coding genes.
DOI: 10.6084/m9.figshare.21522115.v1
title: Additional file 4 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 4: Table S3. Co-expression pair between pseudogenes and coding genes.
DOI: 10.6084/m9.figshare.21522118
title: Additional file 5 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 5: Table S4. GO enrichment for coding genes co-expressed with dynamic pseudogenes.
DOI: 10.6084/m9.figshare.21522118.v1
title: Additional file 5 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 5: Table S4. GO enrichment for coding genes co-expressed with dynamic pseudogenes.
DOI: 10.6084/m9.figshare.21522121
title: Additional file 6 of Evolution and function of developmentally dynamic pseudogenes in mammals

description: Additional file 6: Table S5. GO enrichment for coding genes co-expressed with non-dynamic pseudogenes.