cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3364840.v1
title: Kite-based Structure-from-Motion survey of southern Topsail Beach, North Carolina, USA, 4/14/2016

description: Digital Surface Model (DSM), Orthophoto, Ground Control Point (GCP) coordinates (recorded using an RTK GNSS system), Structure-from-Motion report (with relevant parameters and spatial accuracy) and raw aerial images from a kite-based survey of South Topsail Beach, NC on April 14th, 2016. DSM and Orthophoto was constructed with 30 GCPs.<br>
DOI: 10.17028/rd.lboro.3364747
title: Real World Complexity in Reflectance Value Measurement for Climate-Based Daylight Modelling - Data

description: This dataset is a compilation of the main data used for the BSO 2016 Conference paper titled "Real World Complexity in Reflectance Value Measurement for Climate-Based Daylight Modelling".<br>The zip file contains different folders structured as follows: "HDR": the HDR images taken in the analysed classroom with the relative derived reflectance map (.hdr and .pdf);"measures": the coupled measurements of luminance and illuminance taken with luminance and lux meters respectively for the different surfaces found in the classroom (.xlsx);"sim_input": the material descriptions in Radiance format for each of the methods analysed in the paper that were inserted in the simulations (.txt and .mat); "sim_output": the annual metrics obtained from the simulations by using the CBDM 4-component method and the results of Daylight Factor calculations (.txt).<br>The classrooms' 3D models are also available at the Reference link provided within this entry that redirects to a GitHub repository.
DOI: 10.17028/rd.lboro.3364747.v2
title: Real World Complexity in Reflectance Value Measurement for Climate-Based Daylight Modelling - Data

description: This dataset is a compilation of the main data used for the BSO 2016 Conference paper titled "Real World Complexity in Reflectance Value Measurement for Climate-Based Daylight Modelling".<br>The zip file contains different folders structured as follows: "HDR": the HDR images taken in the analysed classroom with the relative derived reflectance map (.hdr and .pdf);"measures": the coupled measurements of luminance and illuminance taken with luminance and lux meters respectively for the different surfaces found in the classroom (.xlsx);"sim_input": the material descriptions in Radiance format for each of the methods analysed in the paper that were inserted in the simulations (.txt and .mat); "sim_output": the annual metrics obtained from the simulations by using the CBDM 4-component method and the results of Daylight Factor calculations (.txt).<br>The classrooms' 3D models are also available at the Reference link provided within this entry that redirects to a GitHub repository.
DOI: 10.17028/rd.lboro.3364747.v1
title: Real World Complexity in Reflectance Value Measurement for Climate-Based Daylight Modelling - Data

description: This dataset is a compilation of the main data used for the BSO 2016 Conference paper titled "Real World Complexity in Reflectance Value Measurement for Climate-Based Daylight Modelling".<br>The zip file contains different folders structured as follows: "HDR": the HDR images taken in the analysed classroom with the relative derived reflectance map (.hdr and .pdf);"measures": the coupled measurements of luminance and illuminance taken with luminance and lux meters respectively for the different surfaces found in the classroom (.xlsx);"sim_input": the material descriptions in Radiance format for each of the methods analysed in the paper that were inserted in the simulations (.txt and .mat); "sim_output": the annual metrics obtained from the simulations by using the CBDM 4-component method and the results of Daylight Factor calculations (.txt).<br>The classrooms' 3D models are also available at the Reference link provided within this entry that redirects to a GitHub repository.
DOI: 10.6084/m9.figshare.3364735
title: C.elegansResults4Paper.zip

description: Data from transgenic strains of C.elegans crawling on agar plates.
DOI: 10.6084/m9.figshare.3364735.v1
title: C.elegansResults4Paper.zip

description: Data from transgenic strains of C.elegans crawling on agar plates.
DOI: 10.6084/m9.figshare.3364726
title: Atypical Salmonella enterica serovars in murine and human infection models: Is it time to reassess our approach to the study of salmonellosis?

description: Nontyphoidal <i>Salmonella </i>species<i> </i>are globally disseminated pathogens and the predominant cause of gastroenteritis. The pathogenesis of salmonellosis has been extensively studied using <i>in vivo</i> murine models and cell lines typically challenged with <i>Salmonella</i> Typhimurium. Although<i> </i>serovars Enteritidis and Typhimurium are responsible for the most<i> </i>of human infections reported to the CDC, several other serovars also contribute to clinical cases of salmonellosis. Despite their epidemiological importance, little is known about their infection phenotypes. Here, we report the virulence characteristics and genomes of 10 atypical <i>S. enterica</i> serovars linked to multistate foodborne outbreaks in the United States. We show that the murine RAW 264.7 macrophage<i> </i>model of infection is unsuitable for inferring human relevant differences in nontyphoidal <i>Salmonella </i>infections<i> </i>whereas differentiated human THP-1 macrophages allowed these isolates to be further characterised in a more relevant, human context.
DOI: 10.6084/m9.figshare.3364726.v1
title: Atypical Salmonella enterica serovars in murine and human infection models: Is it time to reassess our approach to the study of salmonellosis?

description: Nontyphoidal <i>Salmonella </i>species<i> </i>are globally disseminated pathogens and the predominant cause of gastroenteritis. The pathogenesis of salmonellosis has been extensively studied using <i>in vivo</i> murine models and cell lines typically challenged with <i>Salmonella</i> Typhimurium. Although<i> </i>serovars Enteritidis and Typhimurium are responsible for the most<i> </i>of human infections reported to the CDC, several other serovars also contribute to clinical cases of salmonellosis. Despite their epidemiological importance, little is known about their infection phenotypes. Here, we report the virulence characteristics and genomes of 10 atypical <i>S. enterica</i> serovars linked to multistate foodborne outbreaks in the United States. We show that the murine RAW 264.7 macrophage<i> </i>model of infection is unsuitable for inferring human relevant differences in nontyphoidal <i>Salmonella </i>infections<i> </i>whereas differentiated human THP-1 macrophages allowed these isolates to be further characterised in a more relevant, human context.
DOI: 10.6084/m9.figshare.3364717
title: Lake Victoria Atlantis model output

description: This is a netcdf file with the Lake Victoria Atlantis model. There is a graph showing the evolution of biomass of the biological groups used in the model
DOI: 10.6084/m9.figshare.3364681
title: Tables.txt

description: Tables with spectrophotometric datas of different body regions.
DOI: 10.6084/m9.figshare.3364462
title: On the Derivation of the Schrodinger equation

description: The Schr odinger equation is one of the most vigorous achievements of physics in the twenty centuries. Unfortunately, the original derivation has not yet been fully understood since it was not established from mathematical framework of Quantum Mechanics. Perhaps, the equation in and of itself is so fundamental like the Newton's three laws of motion. In this paper, we present an approximate approach to constructing the equation by manipulating the analogue of the classical wave model and ideals of quantisation. We also explain why this derivation is only an approximation.
DOI: 10.6084/m9.figshare.3364462.v4
title: On the Derivation of the Schrodinger equation

description: The Schr odinger equation is one of the most vigorous achievements of physics in the twenty centuries. Unfortunately, the original derivation has not yet been fully understood since it was not established from mathematical framework of Quantum Mechanics. Perhaps, the equation in and of itself is so fundamental like the Newton's three laws of motion. In this paper, we present an approximate approach to constructing the equation by manipulating the analogue of the classical wave model and ideals of quantisation. We also explain why this derivation is only an approximation.
DOI: 10.6084/m9.figshare.3364462.v3
title: On the Derivation of the Schrodinger equation

description: The Schr odinger equation is one of the most vigorous achievements of physics in the twenty centuries. Unfortunately, the original derivation has not yet been fully understood since it was not established from mathematical framework of Quantum Mechanics. Perhaps, the equation in and of itself is so fundamental like the Newton's three laws of motion. In this paper, we present an approximate approach to constructing the equation by manipulating the analogue of the classical wave model and ideals of quantisation. We also explain why this derivation is only an approximation.
DOI: 10.6084/m9.figshare.3364330
title: First 2016 survey, static QMC detector recorder fdiv x4, het=30kHz

description: <br>[COPY]<br>Bayfordbury Survey<br>21 April 2016<br>20:00 - 21:45<br>Justin A T Halls<br>QMCI-S200 frequency division X4 and Heterodyne 30kHz/x4<br>QMC Microphone<br>Stereo recording on Olympus digital recorder at 48ksps51.778371, -0.0899193/3 cloud, temp (forecast) 10C-8CFirst Bayfordbury survey of the year.<br>Two static detectors - QMCI-S200 at 30kHz/x4<br>and Tascam DR05 with MEMS microphone. The first<br>located near the gate and the second near the big<br>tree by the small pond. GPS track indicates locations<br>and track walked goes from gate to each static location,<br>then back through the pinetum wood, before going past the Tascam<br>static recorder, across to the railway, down the railway path<br>then through the wood to the memorial, across the clearings and<br>back up the ride to the big tree to collect the Tascam<br>then down to the gate to collect the QMC and back to the<br>field centre.<br>Mainly Pips, one Barbie pass at 21:21, a few Natterers just<br>after leaving the wood, and some Daubs over the main lake at<br>the very end.<br>
DOI: 10.6084/m9.figshare.3364330.v1
title: First 2016 survey, static QMC detector recorder fdiv x4, het=30kHz

description: <br>[COPY]<br>Bayfordbury Survey<br>21 April 2016<br>20:00 - 21:45<br>Justin A T Halls<br>QMCI-S200 frequency division X4 and Heterodyne 30kHz/x4<br>QMC Microphone<br>Stereo recording on Olympus digital recorder at 48ksps51.778371, -0.0899193/3 cloud, temp (forecast) 10C-8CFirst Bayfordbury survey of the year.<br>Two static detectors - QMCI-S200 at 30kHz/x4<br>and Tascam DR05 with MEMS microphone. The first<br>located near the gate and the second near the big<br>tree by the small pond. GPS track indicates locations<br>and track walked goes from gate to each static location,<br>then back through the pinetum wood, before going past the Tascam<br>static recorder, across to the railway, down the railway path<br>then through the wood to the memorial, across the clearings and<br>back up the ride to the big tree to collect the Tascam<br>then down to the gate to collect the QMC and back to the<br>field centre.<br>Mainly Pips, one Barbie pass at 21:21, a few Natterers just<br>after leaving the wood, and some Daubs over the main lake at<br>the very end.<br>
DOI: 10.6084/m9.figshare.3364321
title: Validation of a 15-gene hypoxia classifier in head and neck cancer for prospective use in clinical trials

description: <b>Background:</b> In head and neck squamous cell carcinomas (HNSCC) hypoxic radioresistance can be reduced by use of the hypoxic modifier nimorazole, as shown in the DAHANCA 5 trial. Recently, a 15-gene hypoxia classifier has shown predictive impact for the effect of nimorazole by identifying ‘more’ and ‘less’ hypoxic tumors in the DAHANCA 5 cohort. A prospective multicentre EORTC-1219 study is initiated, where nimorazole and prospective use of the classifier as a predictor is tested in relation to the most recent accelerated chemoradiotherapy treatment. Validation of the gene expression classification procedures is described here. <b>Material and methods:</b> Formalin-fixed paraffin-embedded (FFPE) tumor material from three recent HNSCC cohorts [DAHANCA 18 (n = 96), 24 (n = 40), and IAEA Hypo (n = 55)] was used to establish and validate procedures for prospective classification of patients. Repeatability was tested for the different steps in the gene expression analysis, and reproducibility was tested with xenograft tumors (FaDu<sub>DD</sub>, UTSCC33), where gene expression in complementary sections was compared after fixation and embedding locally and at international institutions, respectively. Intra-tumor heterogeneity was addressed by classifying biopsy samples from HNSCC tumors, where 2–4 biopsies from each tumor was accessible. <b>Results:</b> Procedures were successfully established for individual classification of HNSCC patients in retrospective and prospective cohorts. Measurements of gene expression levels were reproducible between different international institutions. <b>Conclusion:</b> Technical validation of the 15-gene hypoxia classifier demonstrated that it is suitable for implementation in prospective clinical trials.
DOI: 10.6084/m9.figshare.3364321.v1
title: Validation of a 15-gene hypoxia classifier in head and neck cancer for prospective use in clinical trials

description: <b>Background:</b> In head and neck squamous cell carcinomas (HNSCC) hypoxic radioresistance can be reduced by use of the hypoxic modifier nimorazole, as shown in the DAHANCA 5 trial. Recently, a 15-gene hypoxia classifier has shown predictive impact for the effect of nimorazole by identifying ‘more’ and ‘less’ hypoxic tumors in the DAHANCA 5 cohort. A prospective multicentre EORTC-1219 study is initiated, where nimorazole and prospective use of the classifier as a predictor is tested in relation to the most recent accelerated chemoradiotherapy treatment. Validation of the gene expression classification procedures is described here. <b>Material and methods:</b> Formalin-fixed paraffin-embedded (FFPE) tumor material from three recent HNSCC cohorts [DAHANCA 18 (n = 96), 24 (n = 40), and IAEA Hypo (n = 55)] was used to establish and validate procedures for prospective classification of patients. Repeatability was tested for the different steps in the gene expression analysis, and reproducibility was tested with xenograft tumors (FaDu<sub>DD</sub>, UTSCC33), where gene expression in complementary sections was compared after fixation and embedding locally and at international institutions, respectively. Intra-tumor heterogeneity was addressed by classifying biopsy samples from HNSCC tumors, where 2–4 biopsies from each tumor was accessible. <b>Results:</b> Procedures were successfully established for individual classification of HNSCC patients in retrospective and prospective cohorts. Measurements of gene expression levels were reproducible between different international institutions. <b>Conclusion:</b> Technical validation of the 15-gene hypoxia classifier demonstrated that it is suitable for implementation in prospective clinical trials.
DOI: 10.6084/m9.figshare.3364315
title: Article Variables.sav

description: Relevant data supporting the findings of the manuscript "Pain treatment for nursing home residents differs according to cognitive state - a cross-sectional study.<br><br>File type: SPSS<br>
DOI: 10.17028/rd.lboro.3364312
title: Driving a better driving experience: A questionnaire survey of older compared with younger car users - dataset

description: A questionnaire survey of 903 car drivers in the UK (July-Sept 2012), covering musculoskeletal symptoms, the vehicle seat, access to specific vehicle features, ingress/egress, driving performance and driving behaviours. Anyone wishing to use the data may apply directly to the project team. This is because of restrictions on the use of the data, mean that this dataset is embargoed indefinitely.
DOI: 10.17028/rd.lboro.3364312.v1
title: Driving a better driving experience: A questionnaire survey of older compared with younger car users - dataset

description: A questionnaire survey of 903 car drivers in the UK (July-Sept 2012), covering musculoskeletal symptoms, the vehicle seat, access to specific vehicle features, ingress/egress, driving performance and driving behaviours. Anyone wishing to use the data may apply directly to the project team. This is because of restrictions on the use of the data, mean that this dataset is embargoed indefinitely.
DOI: 10.6084/m9.figshare.3364306
title: A new AERONET_OC station for the northern North Sea

description: Poster presented at European Space Agency "Living Planet 2016".<br>The need for high-frequency, high-quality optical measurements at sea level to support and validate satellite measurements of ocean colour has long been recognised (Zibordi, Berthon, et al. 2009). With the aims of creating new satellite products for Sentinels 2 and 3, and greatly increasing the availability of marine in situ data for validation, the HIGHROC proposal was submitted to Framework 7, and subsequently received funding for four years. In work package 5 of the project, a large dataset of in situ measurements of water quality will be generated using automated SMARTBUOY and FERRYBOX systems to generate high quality measurements of parameters such as suspended sediment load, chlorophyll concentration and underwater light penetration. These are the types of data which are typically used in national assessments of water quality, and in Environmental Statements by maritime industry. Utilisation of automated in situ measurements can greatly increase the number of match-ups with satellite data (Neukermans et al. 2012). In addition to the in-water measurements, readings of the radiance leaving the water surface are very important for satellite validation (Zibordi, Mélin, et al. 2009, Zibordi et al. 2015). The water-leaving radiance (Lw) is equivalent to the radiance measured by a satellite after correction for attenuation of light in the atmosphere. There are at present no suitable operational measurements of Lw in UK waters, indeed there were none in the whole of the North Sea prior to HIGHROC. To improve the coverage of sea-level radiance in the North Sea, Cefas and the University of Hull are working together with the Offshore Renewable Energy Catapult centre in the development of an AERONET ocean-colour measuring station to be located at an experimental meteorological tower in the northern North Sea. .
DOI: 10.6084/m9.figshare.3364306.v1
title: A new AERONET_OC station for the northern North Sea

description: Poster presented at European Space Agency "Living Planet 2016".<br>The need for high-frequency, high-quality optical measurements at sea level to support and validate satellite measurements of ocean colour has long been recognised (Zibordi, Berthon, et al. 2009). With the aims of creating new satellite products for Sentinels 2 and 3, and greatly increasing the availability of marine in situ data for validation, the HIGHROC proposal was submitted to Framework 7, and subsequently received funding for four years. In work package 5 of the project, a large dataset of in situ measurements of water quality will be generated using automated SMARTBUOY and FERRYBOX systems to generate high quality measurements of parameters such as suspended sediment load, chlorophyll concentration and underwater light penetration. These are the types of data which are typically used in national assessments of water quality, and in Environmental Statements by maritime industry. Utilisation of automated in situ measurements can greatly increase the number of match-ups with satellite data (Neukermans et al. 2012). In addition to the in-water measurements, readings of the radiance leaving the water surface are very important for satellite validation (Zibordi, Mélin, et al. 2009, Zibordi et al. 2015). The water-leaving radiance (Lw) is equivalent to the radiance measured by a satellite after correction for attenuation of light in the atmosphere. There are at present no suitable operational measurements of Lw in UK waters, indeed there were none in the whole of the North Sea prior to HIGHROC. To improve the coverage of sea-level radiance in the North Sea, Cefas and the University of Hull are working together with the Offshore Renewable Energy Catapult centre in the development of an AERONET ocean-colour measuring station to be located at an experimental meteorological tower in the northern North Sea. .
DOI: 10.6084/m9.figshare.3364288
title: Drift Net Performance Data

description: Data documenting the change in flow over time (1 to 5 minute intervals for 3 hours) for drift nets with 0.5mm mesh in the Murrumbidgee River, ACT, Australia in December 2013.
DOI: 10.6084/m9.figshare.3364288.v1
title: Drift Net Performance Data

description: Data documenting the change in flow over time (1 to 5 minute intervals for 3 hours) for drift nets with 0.5mm mesh in the Murrumbidgee River, ACT, Australia in December 2013.
DOI: 10.6084/m9.figshare.3364225
title: Quality of Life , Stroke Survivors QOL data Excel Spreadsheet.xls

description: Excel Sheet , De identified Data.Study protocol was approved by the following participating institutional review boards: Aga Khan University Hospital Ethics Review Committee (ERC) with ERC Ref #:2762-Med-ERC-13 and Dow University of Health Sciences Institutional Review Board with reference number of IRB-416/DUHS/-13<b>.I</b><b></b>
DOI: 10.5281/zenodo.4014968
title: Petunia parodii S7 annotations

description: Petunia axillaris v4 annotations (https://zenodo.org/record/3922967#.X1IhSIZS-EJ) gmapped onto the Petunia axillaris subs. parodii assembly (https://www.ncbi.nlm.nih.gov/assembly/GCA_013625405.1) described in "Indentification of transcription factors controlling floral morphology in wild Petunia species with contrasting pollination syndroms" https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.14962
DOI: 10.5281/zenodo.4014967
title: Petunia parodii S7 annotations

description: Petunia axillaris v4 annotations (https://zenodo.org/record/3922967#.X1IhSIZS-EJ) gmapped onto the Petunia axillaris subs. parodii assembly (https://www.ncbi.nlm.nih.gov/assembly/GCA_013625405.1) described in "Indentification of transcription factors controlling floral morphology in wild Petunia species with contrasting pollination syndroms" https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.14962
DOI: 10.6084/m9.figshare.3364204
title: Marine yeast biodiversity on seaweeds in New Zealand waters

description: Little is known about the biodiversity of marine yeast from New Zealand. Marine yeasts were isolated from various seaweed surfaces sampled at three locations in the Wellington Region. DNA sequencing of the internal transcribed spacer (ITS) regions was conducted, and the resultant sequence data were used in isolate identification. Yeasts isolated during this investigation were not unique; 71 isolates that are frequently detected in marine and terrestrial environments worldwide were identified from a range of seaweed genera. Furthermore, high ITS sequence similarity was observed between yeasts isolated during this investigation and those from geographically distant locations. These findings may indicate that marine yeasts are ubiquitous at a global level, although evidence is insufficient as to whether yeasts demonstrate biogeographic distribution patterns. Yeasts isolated during this investigation may have ecological implications in New Zealand's marine environment. Yeast isolates identified from seaweed genera have been demonstrated to have beneficial properties and applications and their potential should be explored.