cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/kz64m7
title: Description of a new genus and species of the subfamily Arcoscalpellinae Zevina, 1978 (Cirripedia: Thoracica: Scalpellidae) from deep waters of the South China Sea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Xian-Qiu, Ren, Zhong-Li, Sha (2014): Description of a new genus and species of the subfamily Arcoscalpellinae Zevina, 1978 (Cirripedia: Thoracica: Scalpellidae) from deep waters of the South China Sea. Journal of Natural History 48 (17): 1055-1060, DOI: 10.1080/00222933.2013.841300
DOI: 10.6084/m9.figshare.6709067
title: Supplemental Data

description: Supplemental tables 1-3
DOI: 10.6084/m9.figshare.6709067.v1
title: Supplemental Data

description: Supplemental tables 1-3
DOI: 10.6084/m9.figshare.6709058
title: EMAPA Enrichment - unfiltered

description: EMAPA Enrichment results based on differentially expressed gene lists.<br>see README.md for more details.
DOI: 10.6084/m9.figshare.6709058.v1
title: EMAPA Enrichment - unfiltered

description: EMAPA Enrichment results based on differentially expressed gene lists.<br>see README.md for more details.
DOI: 10.6084/m9.figshare.6708983
title: Figure 5: Fraction of overturned IBC versus time

description: The fraction of overturned IBC is determined as a function of time. In each file, the first column represents time (in Myr), the second column represents dimensionless time (t = t* kappa / D^2, where t is dimensionless time, t' is dimensional time in second, kappa is thermal diffusivity in m^2 s^-1, D is mantle thickness in meter) , and the third column represents the fraction of overturned IBC.<br>The post-fix of each filed name specifies the reference viscosity, activation energy and viscosity contrast between IBC and lunar mantle. For example, the post-fix a20e200d01 specifies a reference viscosity of 10^20 Pa s, an activation energy of 200 kJ/mol and one-order viscosity contrast between IBC and lunar mantle.
DOI: 10.6084/m9.figshare.6708983.v2
title: Figure 5: Fraction of overturned IBC versus time

description: The fraction of overturned IBC is determined as a function of time. In each file, the first column represents time (in Myr), the second column represents dimensionless time (t = t* kappa / D^2, where t is dimensionless time, t' is dimensional time in second, kappa is thermal diffusivity, D is mantle thickness) , and the third column represents the fraction of overturned IBC.
DOI: 10.6084/m9.figshare.6708983.v1
title: Fraction of overturned IBC versus time

description: The fraction of overturned IBC is determined as a function of time. In each file, the first column represents time (in Myr), the second column represents dimensionless time, and the third column represents the fraction of overturned IBC.
DOI: 10.15468/rak8bz
title: A revisional study of the Chinese species of Amphiops Erichson (Coleoptera, Hydrophilidae, Chaetarthriini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Fenglong, J. I. A. (2014): A revisional study of the Chinese species of Amphiops Erichson (Coleoptera, Hydrophilidae, Chaetarthriini). Journal of Natural History 48 (17): 1085-1101, DOI: 10.1080/00222933.2013.861938
DOI: 10.5281/zenodo.4007032
title: PatternScout Evaluation Data

description: This folder contains the data used to evaluate accuracy of PatternScout query generation. It is structured as follows: Data related to each pattern category is segregated as <br> 1. Creational<br> 2. Structural<br> 3. Behavioral Within each category, there is a seperate directory for the patterns evaluated in that category. Each pattern has the follwing subdirectories: 1. uml_images - PNG images of UML diagrams of each variant considered<br> 2. uml_xmi - XMI version of the UML diagram for each variant<br> 3. queries - SPARQL queries generated by PatternScout in .rq format<br> 4. model_fragments - .mfj files of each UML diagram for importing into tools like StarUML if any new variant needs to be created by extending or updating these diagrams<br>
DOI: 10.5281/zenodo.4007031
title: PatternScout Evaluation Data

description: This folder contains the data used to evaluate accuracy of PatternScout query generation. It is structured as follows: Data related to each pattern category is segregated as <br> 1. Creational<br> 2. Structural<br> 3. Behavioral Within each category, there is a seperate directory for the patterns evaluated in that category. Each pattern has the follwing subdirectories: 1. uml_images - PNG images of UML diagrams of each variant considered<br> 2. uml_xmi - XMI version of the UML diagram for each variant<br> 3. queries - SPARQL queries generated by PatternScout in .rq format<br> 4. model_fragments - .mfj files of each UML diagram for importing into tools like StarUML if any new variant needs to be created by extending or updating these diagrams<br>
DOI: 10.6084/m9.figshare.6708839
title: Supplementary Material for: Whole-Transcriptome Analysis of CD133+CD144+ Cancer Stem Cells Derived from Human Laryngeal Squamous Cell Carcinoma Cells

description: <b><i>Background/Aims:</i></b> CD133+CD44+ cancer stem cells previously isolated from laryngeal squamous cell carcinoma (LSCC) cell lines showed strong malignancy and tumorigenicity. However, the molecular mechanism underlying the enhanced malignancy remained unclear. <b><i>Methods:</i></b> Cell proliferation assay, spheroid-formation experiment, RNA sequencing (RNA-seq), miRNA-seq, bioinformatic analysis, quantitative real-time PCR, migration assay, invasion assay, and luciferase reporter assay were used to identify differentially expressed mRNAs, lncRNAs, circRNAs and miRNAs, construct transcription regulatory network, and investigate functional roles and mechanism of circRNA in CD133+CD44+ laryngeal cancer stem cells. <b><i>Results:</i></b> Differentially expressed genes in TDP cells were mainly enriched in the biological processes of cell differentiation, regulation of autophagy, negative regulation of cell death, regulation of cell growth, response to hypoxia, telomere maintenance, cellular response to gamma radiation, and regulation of apoptotic signaling, which are closely related to the malignant features of tumor cells. We constructed the regulatory network of differentially expressed circRNAs, miRNAs and mRNAs. qPCR findings for the expression of key genes in the network were consistent with the sequencing data. Moreover, our data revealed that circRNA hg19_circ_0005033 promotes proliferation, migration, invasion, and chemotherapy resistance of laryngeal cancer stem cells. <b><i>Conclusions:</i></b> This study provides potential biomarkers and targets for LSCC diagnosis and therapy, and provide important evidences for the heterogeneity of LSCC cells at the transcription level.
DOI: 10.6084/m9.figshare.6708674
title: Bui_Ivers_Ragsdale-deposit.xlsx

description: The dataset contains phenotyping data for hybrid crosses in <i>Pristionchus pacificus</i>, mRNA sequences and protein sequences of <i>Pristionchus arcanus </i>SSU-1 homologs. <br>Manuscript title: A sulfotransferase dosage-dependently regulates mouthpart polyphenism in the nematode <i>Pristionchus pacificus</i><br><i><br></i><br>
DOI: 10.6084/m9.figshare.6708674.v1
title: Bui_Ivers_Ragsdale-deposit.xlsx

description: The dataset contains all phenotyping data for all crosses in the nematode <i>Pristionchus pacificus</i><i><br></i><br>
DOI: 10.6084/m9.figshare.6708674.v3
title: Bui_Ivers_Ragsdale-deposit.xlsx

description: The dataset contains phenotyping data for hybrid crosses in <i>Pristionchus pacificus</i>, mRNA sequences and protein sequences of <i>Pristionchus arcanus </i>SSU-1 homologs. <br>Manuscript title: A sulfotransferase dosage-dependently regulates mouthpart polyphenism in the nematode <i>Pristionchus pacificus</i><br><i><br></i><br>
DOI: 10.6084/m9.figshare.6708674.v2
title: Bui_Ivers_Ragsdale-deposit.xlsx

description: The dataset contains phenotyping data for hybrid crosses in <i>Pristionchus pacificus</i>, mRNA sequences and protein sequences of <i>Pristionchus arcanus </i>SSU-1 homologs. <br>Manuscript title: A sulfotransferase dosage-dependently regulates mouthpart polyphenism in the nematode <i>Pristionchus pacificus</i><br><i><br></i><br>
DOI: 10.5066/p9wbolyw
title: Asian carp eDNA and egg morphology data collected from Truman Reservoir tributaries, Missouri, USA, 2014

description: Ichthyoplankton tows samples collected from Truman reservoir tributaries evaluated for eDNA. Data also includes hydrologic and water quality parameters and morphology of grass carp eggs.
DOI: 10.15468/hhpa2x
title: Report on the Raphitomidae Bellardi, 1875 (Mollusca: Gastropoda: Conoidea) from the China Seas

description: This dataset contains the digitized treatments in Plazi based on the original journal article Li, Baoquan, Li, Xinzheng (2014): Report on the Raphitomidae Bellardi, 1875 (Mollusca: Gastropoda: Conoidea) from the China Seas. Journal of Natural History 48 (17): 999-1025, DOI: 10.1080/00222933.2013.861939
DOI: 10.6084/m9.figshare.6707993
title: UCalgary_BM_Repo

description: <i>Anthropomorphic breast models repository for research and development of microwave breast imaging technologies</i>
DOI: 10.15468/msmdpa
title: Description of Ghatiana, a new genus of freshwater crab, with two new species and a new species of Gubernatoriana (Crustacea: Decapoda: Brachyura: Gecarcinucidae) from the Western Ghat Mountains, India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pati, S. K., Sharma, R. M. (2014): Description of Ghatiana, a new genus of freshwater crab, with two new species and a new species of Gubernatoriana (Crustacea: Decapoda: Brachyura: Gecarcinucidae) from the Western Ghat Mountains, India. Journal of Natural History 48 (21): 1279-1298, DOI: 10.1080/00222933.2013.859315
DOI: 10.15468/a2nemf
title: Disjunct distribution of Szeptyckiella gen. nov. from New Caledonia and South China undermines the monophyly of Willowsiini (Collembola: Entomobryidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zhang, Feng, Bedos, Anne, Deharveng, Louis (2014): Disjunct distribution of Szeptyckiella gen. nov. from New Caledonia and South China undermines the monophyly of Willowsiini (Collembola: Entomobryidae). Journal of Natural History 48 (21): 1299-1317, DOI: 10.1080/00222933.2013.859317
DOI: 10.15468/j7t26z
title: Genus Promalactis Meyrick (Lepidoptera: Oecophoridae) in northern Vietnam, Part III: seven new species and four newly recorded species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kim, Sora, Park, Kyu-Tek, Heppner, John B., Lee, Seunghwan (2014): Genus Promalactis Meyrick (Lepidoptera: Oecophoridae) in northern Vietnam, Part III: seven new species and four newly recorded species. Journal of Natural History 48 (21): 1327-1346, DOI: 10.1080/00222933.2013.862576
DOI: 10.6084/m9.figshare.6707213
title: yates_etal2018a_simoutput.mat

description: This is a .mat file containing all the simulation output necessary to reproduce the work presented in Yates et al., 2018a (submitted to JGR-Space Physics). Methodology and model details are given in the manuscript. The data file is currently usable in Matlab and Octave (free open source). Once published will update this and include higher level products in ASCII format.
DOI: 10.6084/m9.figshare.6707213.v2
title: yates_etal2018a_simoutput.mat

description: This is a .mat file containing all the simulation output necessary to reproduce the work presented in Yates et al., 2018a (submitted to JGR-Space Physics). Methodology and model details are given in the manuscript. The data file is currently usable in Matlab and Octave (free open source). Once published will update this and include higher level products in ASCII format.
DOI: 10.6084/m9.figshare.6707213.v1
title: yates_etal2018a_simoutput.mat

description: This is a .mat file containing all the simulation output necessary to reproduce the work presented in Yates et al., 2018a (submitted to JGR-Space Physics). Methodology and model details are given in the manuscript. The data file is currently usable in Matlab and Octave (free open source). Once published will update this and include higher level products in ASCII format.
DOI: 10.6084/m9.figshare.6707111
title: Data - Identification of influencers through the wisdom of crowds

description: Data was collected from online news discussions on three major news providers. The zip file contains three datasets in csv format, one for each provider. <br>Each csv file contains the following variables: <br>- <b>ThreadID</b>: the id of the discussion thread. - <b>Topic</b>: the discussion topic as provided by the platform. - <b>UserID</b>: the id of the user. - <b>Upvotes</b>: the total number of upvotes received by a user in a thread.
DOI: 10.6084/m9.figshare.6707111.v1
title: Data - Identification of influencers through the wisdom of crowds

description: Data was collected from online news discussions on three major news providers. The zip file contains three datasets in csv format, one for each provider. <br>Each csv file contains the following variables: <br>- <b>ThreadID</b>: the id of the discussion thread. - <b>Topic</b>: the discussion topic as provided by the platform. - <b>UserID</b>: the id of the user. - <b>Upvotes</b>: the total number of upvotes received by a user in a thread.
DOI: 10.6084/m9.figshare.6707081
title: Dataset for: TRPM7-mediated spontaneous Ca<sup>2+</sup> entry regulates the proliferation and differentiation of human leukaemia cell line K562

description: AIM: Continuous Ca<sup>2+</sup> influx is essential to maintain intracellular Ca<sup>2+</sup> homeostasis and its dysregulation leads to a variety of cellular dysfunctions. In this study, we explored the functional roles of spontaneous Ca<sup>2+</sup> influx for the proliferation and differentiation of a human erythromyeloid leukaemia cell line K562. METHODS: mRNA/protein expressions were assessed by the real-time RT-PCR, Western blotting and immunocytochemical staining. Intracellular Ca<sup>2+</sup> concentration ([Ca<sup>2+</sup>]<sub>i</sub>) and ionic currents were measured by fluorescent imaging and patch clamping techniques, respectively. Cell counting/viability and colorimetric assays were applied to assess proliferation rate and haemoglobin synthesis, respectively. RESULTS: Elimination of extracellular Ca<sup>2+</sup> decreased basal [Ca<sup>2+</sup>]<sub>i</sub> in proliferating K562 cells. Cation channel blockers such as SK&F96365, 2-APB, Gd<sup>3+</sup> and FTY720 dose-dependently decreased basal [Ca<sup>2+</sup>]<sub>i</sub>. A spontaneously active inward current (I<sub>spont</sub>) contributive to basal [Ca<sup>2+</sup>]<sub>i</sub> was identified by the nystatin-perforated whole-cell recording. I<sub>spont</sub> permeated Ca<sup>2+</sup> comparably to Na<sup>+</sup>, and was greatly eliminated by siRNA targeting TRPM7, a melastatin member of the transient receptor potential (TRP) superfamily. Consistent with these findings, TRPM7 immune-reactivity was detected by Western blotting, and immunofluorescence representing TRPM7 was found localized to the K562 cell membrane. Strikingly, all these procedures, i.e. Ca<sup>2+</sup> removal, TRPM7 blockers and siRNA-mediated TRPM7 knockdown significantly retarded the growth and suppressed hemin-induced γ-globin and haemoglobin syntheses in K562 cells, respectively, both of which appeared associated with the inhibition of ERK activation. CONCLUSIONS: These results collectively suggest that spontaneous Ca<sup>2+</sup> influx through constitutively active TRPM7 channels may critically regulate both proliferative and erythroid differentiation potentials of K562 cells.
DOI: 10.6084/m9.figshare.6707081.v1
title: Dataset for: TRPM7-mediated spontaneous Ca<sup>2+</sup> entry regulates the proliferation and differentiation of human leukaemia cell line K562

description: AIM: Continuous Ca<sup>2+</sup> influx is essential to maintain intracellular Ca<sup>2+</sup> homeostasis and its dysregulation leads to a variety of cellular dysfunctions. In this study, we explored the functional roles of spontaneous Ca<sup>2+</sup> influx for the proliferation and differentiation of a human erythromyeloid leukaemia cell line K562. METHODS: mRNA/protein expressions were assessed by the real-time RT-PCR, Western blotting and immunocytochemical staining. Intracellular Ca<sup>2+</sup> concentration ([Ca<sup>2+</sup>]<sub>i</sub>) and ionic currents were measured by fluorescent imaging and patch clamping techniques, respectively. Cell counting/viability and colorimetric assays were applied to assess proliferation rate and haemoglobin synthesis, respectively. RESULTS: Elimination of extracellular Ca<sup>2+</sup> decreased basal [Ca<sup>2+</sup>]<sub>i</sub> in proliferating K562 cells. Cation channel blockers such as SK&F96365, 2-APB, Gd<sup>3+</sup> and FTY720 dose-dependently decreased basal [Ca<sup>2+</sup>]<sub>i</sub>. A spontaneously active inward current (I<sub>spont</sub>) contributive to basal [Ca<sup>2+</sup>]<sub>i</sub> was identified by the nystatin-perforated whole-cell recording. I<sub>spont</sub> permeated Ca<sup>2+</sup> comparably to Na<sup>+</sup>, and was greatly eliminated by siRNA targeting TRPM7, a melastatin member of the transient receptor potential (TRP) superfamily. Consistent with these findings, TRPM7 immune-reactivity was detected by Western blotting, and immunofluorescence representing TRPM7 was found localized to the K562 cell membrane. Strikingly, all these procedures, i.e. Ca<sup>2+</sup> removal, TRPM7 blockers and siRNA-mediated TRPM7 knockdown significantly retarded the growth and suppressed hemin-induced γ-globin and haemoglobin syntheses in K562 cells, respectively, both of which appeared associated with the inhibition of ERK activation. CONCLUSIONS: These results collectively suggest that spontaneous Ca<sup>2+</sup> influx through constitutively active TRPM7 channels may critically regulate both proliferative and erythroid differentiation potentials of K562 cells.
DOI: 10.6084/m9.figshare.12890735.v1
title: R0189_20170929a_videos

description: Rat 0189, skilled reaching data collected on 9/29/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12890735
title: R0189_20170929a_videos

description: Rat 0189, skilled reaching data collected on 9/29/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.6706874
title: Supplementary Material for: Regional Subclinical Cerebrovascular Disease Is Associated with Balance in an Elderly Multi-Ethnic Population

description: <b><i>Introduction:</i></b> White matter hyperintensity volume (WMHV) and subclinical brain infarcts (SBI) are associated with impaired mobility, but less is known about the association of WMHV in specific brain regions. We hypothesized that anterior WMHV would be associated with lower scores on the Short Physical Performance Battery (SPPB), a well-validated mobility scale. <b><i>Methods:</i></b> The SPPB was measured a median of 5 years after enrollment into the Northern Manhattan MRI sub study. Volumetric distributions for WMHV in 14 brain regions as a proportion of total cranial volume were determined. Multi-variable linear regression was performed to examine the association of SBI and regional log-WMHV with the SPPB score. <b><i>Results:</i></b> Among 668 participants with SPPB measurements (mean 74 ± 9 years, 37% male and 70% Hispanic), the mean SPPB score was 8.2 ± 2.9. Total (beta = –0.3 per SD, <i>p</i> = 0.001), anterior periventricular (beta = –0.4 per SD, <i>p</i> = 0.001), parietal (beta = –0.2 per SD, <i>p</i> = 0.02) and frontal (beta = –0.3 per SD, <i>p</i> = 0.002) WMHVs were associated with SPPB; other WMHV and SBI were not associated with the SPPB. <b><i>Conclusions:</i></b> WMHV, especially in the anterior ­cerebral regions, is associated with a lower SPPB. Prevention of subclinical cerebrovascular disease is a potential target to prevent physical decline in the elderly.
DOI: 10.6084/m9.figshare.12890567
title: H&E-stained sections

description: 5X objective images merged using photoshop<br>Larynges were sectioned in four series where A = H&E, B = Masson's Trichrome, C = Verhoeff van Gieson, and D = Alcian Blue. Each slide contained 6 sections<br>Numbers before the letter (e.g. 3A) refer to the slide number. Lower numbers contain sections that are more caudal (towards the trachea).<br>The numbers after the letter (e.g. #A_2) refer to the section number on the slide.
DOI: 10.6084/m9.figshare.6706211
title: Neonates_plosOne.sav

description: Newborn infants' hair cortisol levels reflect chronic maternal stress during pregnancy<br><br><br>
DOI: 10.5517/ccdc.csd.cc24385q
title: CCDC 1969342: Experimental Crystal Structure Determination

description: Related Article: Yu-Long Zhang, Zhen-Ni Zhao, Wang-Lai Li, Jing-Jie Li, Subarna Jyoti Kalita, Uwe Schneider, Yi-Yong Huang|2020|Chem.Commun.|56|10030|doi:10.1039/D0CC00367K
DOI: 10.5517/ccdc.csd.cc24941n
title: CCDC 1974980: Experimental Crystal Structure Determination

description: Related Article: Morten Gotthold Vinum, Laura Voigt, Steen H. Hansen, Colby Bell, Kensha Marie Clark, René Wugt Larsen, Kasper S. Pedersen|2020|Chemical Science|11|8267|doi:10.1039/D0SC01836H
DOI: 10.5517/ccdc.csd.cc24942p
title: CCDC 1974981: Experimental Crystal Structure Determination

description: Related Article: Morten Gotthold Vinum, Laura Voigt, Steen H. Hansen, Colby Bell, Kensha Marie Clark, René Wugt Larsen, Kasper S. Pedersen|2020|Chemical Science|11|8267|doi:10.1039/D0SC01836H
DOI: 10.5517/ccdc.csd.cc24943q
title: CCDC 1974982: Experimental Crystal Structure Determination

description: Related Article: Morten Gotthold Vinum, Laura Voigt, Steen H. Hansen, Colby Bell, Kensha Marie Clark, René Wugt Larsen, Kasper S. Pedersen|2020|Chemical Science|11|8267|doi:10.1039/D0SC01836H
DOI: 10.5517/ccdc.csd.cc24944r
title: CCDC 1974983: Experimental Crystal Structure Determination

description: Related Article: Morten Gotthold Vinum, Laura Voigt, Steen H. Hansen, Colby Bell, Kensha Marie Clark, René Wugt Larsen, Kasper S. Pedersen|2020|Chemical Science|11|8267|doi:10.1039/D0SC01836H
DOI: 10.5517/ccdc.csd.cc24m2yt
title: CCDC 1984556: Experimental Crystal Structure Determination

description: Related Article: Julien Braire, Vincent Dorcet, Joëlle Vidal, Claudia Lalli, François Carreaux|2020|Org.Biomol.Chem.|18|6042|doi:10.1039/D0OB01386B