cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3641042_d14.v1
title: Additional file 11: Table S7. of A transcriptional blueprint for a spiral-cleaving embryo

description: List of up-regulated genes between adjacent stages. Only genes that exhibit an FPKM of 10 or higher in the later stage are shown. The list is ordered by FDR (cutoff is 0.001) and includes the expression values and the annotated protein name. (XLSX 123Â kb)
DOI: 10.6084/m9.figshare.c.3642038_d2.v1
title: Additional file 13: Dataset S3. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

description: Gene set enrichment analysis (GSEA) of GO terms comparing diapause and response to restricted diet in D. melanogaster. We compare our study of three weeks diapause (3wD) to that of an analysis of effects of restricted diet (RF) [145]. (A) GSEA for upregulated transcripts identified mostly terms connected to cell cycle and gene expression. (B) Transcripts mostly from carbohydrate metabolism are regulated in opposite way in 3wD and RF. (C) For downregulated transcripts no significant enriched GO terms (ns) were identified. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3642038_d6.v1
title: Additional file 12: Dataset S2. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

description: List of genes shared between diapause and response to restricted diet in D. melanogaster. We compared our study of three weeks diapause (3wD) to that of an analysis of effects of restricted diet (RF) [145]. Significantly inhibited transcripts are highlighted in blue, significantly activated in orange (for the RF study, genes with q ≤ 0.05 were considered significantly regulated, as was used in original study). Links to Flybase and Genecard databases are included. The Venn diagram summarizes the numbers of significantly regulated genes and how they overlap. (XLSX 173 kb)
DOI: 10.6084/m9.figshare.c.3642038_d7.v1
title: Additional file 9: Table S4. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

description: Genes affected by 3 weeks diapause compared to ones implicated in aging and increased longevity. Microarray study of aging response genes [136], longevity mapping study [33], transcriptome changes in mated and non-mated aging females [7] and candidate study for lifespan genes [135]. Significantly inhibited transcripts are highlighted in blue, significantly activated in orange. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.c.3642038_d12.v1
title: Additional file 14: Dataset S4. of Slowed aging during reproductive dormancy is reflected in genome-wide transcriptome changes in Drosophila melanogaster

description: Comparisons of diapause response genes from our study of D. melanogaster with other transcription studies on reproductive diapause. We compared our study to a D. montana candidate gene microarray study [149] and Culex pipiens diapause response genes [152]. Significantly inhibited transcripts are highlighted in blue, significantly activated in orange. Links to Flybase are included at genes shared with D. melanogaster. (XLSX 15 kb)
DOI: 10.15468/dl.uxffps
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anoplagonus inermis (Günther, 1860)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 22 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038784-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/aiwr33
title: Apple_scab_R22.tab

description: :unav
DOI: 10.57745/hin8gu
title: Evaluation_scale_for_severity_(adapted_from_Lateur_&_Populer_1994).pdf

description: Severity scale for Venturia inaequalis on leaves and fruit. There is one line for each "score", with a definition of symptoms and the proportion of organs affected in %.
DOI: 10.57745/xpsj2z
title: Data description-Apple scab R22 (English).pdf

description: Metadata file providing details on the composition of the dataset file, and how the data was obtained.
DOI: 10.57745/2kyykp
title: Data description-Apple scab R22 (French).pdf

description: Fichier de métadonnées fournissant des détails sur la composition du fichier de l'ensemble de données et sur la manière dont les données ont été obtenues.
DOI: 10.57745/csvqfd
title: apple-scab-r22.tab

description: :unav
DOI: 10.6084/m9.figshare.c.3642971_d2.v1
title: MOESM2 of Lessons learned from the microbial ecology resulting from different inoculation strategies for biogas production from waste products of the bioethanol/sugar industry

description: Additional file 2: Table S2. List of obtained OTUs for the co-digestion reactors at three different sampling points.
DOI: 10.6084/m9.figshare.c.3642980_d1.v1
title: Additional file 1: of Ratio of apoB/LDL: a potential clinical index for vascular cognitive impairment

description: Original data setďťż. (XLS 41 kb)
DOI: 10.6084/m9.figshare.c.3642989_d1.v1
title: Additional file 1: of Proteomic analysis of Pteropus alecto kidney cells in response to the viral mimic, Poly I:C

description: Full list of identified proteins by LC-MS/MS and their ratio at each replicate time points determined by iTRAQ (Sheet1). A list of the differentially regulated proteins with a mean fold-change ofâ  â Ľâ  1.5 (Sheet2). (XLSX 486 kb)
DOI: 10.6084/m9.figshare.28052768
title: Metadata

description: In our study of SARS-CoV-2 genomic mutation analysis we investigated on the variants and different types of mutations in the viral genome and compared them with the variants from the other regions of the world.
DOI: 10.6084/m9.figshare.28052768.v1
title: Metadata

description: In our study of SARS-CoV-2 genomic mutation analysis we investigated on the variants and different types of mutations in the viral genome and compared them with the variants from the other regions of the world.
DOI: 10.6084/m9.figshare.c.3643895_d1.v1
title: Additional file 2: of A systematic review of mental health outcome measures for young people aged 12 to 25Â years

description: Mental health outcome measures used with young people 12 to 25 years [78â  248]. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3643904_d3.v1
title: Additional file 1: Script S1. of Mining kidney toxicogenomic data by using gene co-expression modules

description: R script used to generate modules by using the iterative signature algorithm. (ZIP 15173 kb)
DOI: 10.6084/m9.figshare.c.3643904_d4.v1
title: Additional file 3: Script S2. of Mining kidney toxicogenomic data by using gene co-expression modules

description: R script used to convert Affymetrix probe ids to human gene IDs. (ZIP 3 kb)
DOI: 10.6084/m9.figshare.c.3643904_d5.v1
title: Additional file 5: Table S3. of Mining kidney toxicogenomic data by using gene co-expression modules

description: List of chemical exposures associated with 137 co-expression modules. (XLSX 80 kb)
DOI: 10.15468/dl.7v9a5w
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Saponaria bellidifolia Sm., Smegmathamnium bellidifolium (Sm.) Rchb.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 98 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038786-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3643904_d9.v1
title: Additional file 12: Table S9. of Mining kidney toxicogenomic data by using gene co-expression modules

description: List of nodes in 158 AKI-relevant sub networks and their associated topological properties. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3643904_d6.v1
title: Additional file 6: Table S4. of Mining kidney toxicogenomic data by using gene co-expression modules

description: List of the AKI-relevant genes. (XLSX 74 kb)
DOI: 10.6084/m9.figshare.c.3643904_d10.v1
title: Additional file 7: Table S5. of Mining kidney toxicogenomic data by using gene co-expression modules

description: List of chemical exposures that map to modules in module cluster 7 and module cluster 11. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3643904_d14.v1
title: Additional file 16: Table S12. of Mining kidney toxicogenomic data by using gene co-expression modules

description: Complete list of publications supporting gene-to-function relationship in the 158 AKI-relevant sub-network genes (AKI-SN). (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3643904_d16.v1
title: Additional file 15: Table S11. of Mining kidney toxicogenomic data by using gene co-expression modules

description: List of chemical exposures modulating the expression of immunoproteasomes in kidney. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3643916_d1.v1
title: Additional file 1: of A loss-of-function and H2B-Venus transcriptional reporter allele for Gata6 in mice

description: Figure 2 raw data. (CSV 163Â kb)
DOI: 10.6084/m9.figshare.c.3643919_d1.v1
title: Additional file 1: of A review of policy dissemination and implementation research funded by the National Institutes of Health, 2007â  2014

description: NIH-funded policy D&I projects. (XLSM 583Â kb)
DOI: 10.6084/m9.figshare.c.3643922_d2.v1
title: Additional file 1: Table S1. of Single-cell TCRseq: paired recovery of entire T-cell alpha and beta chain transcripts in T-cell receptors from single-cell RNAseq

description: Summary data of 91 single-cell mouse T-cell RNAseq samples. Provided as a separate Excel file. (XLSX 59 kb)
DOI: 10.15468/dl.dbmkmt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chilo aleniella Strand, 1913"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038787-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3643922_d1.v1
title: Additional file 3: Table S3. of Single-cell TCRseq: paired recovery of entire T-cell alpha and beta chain transcripts in T-cell receptors from single-cell RNAseq

description: Results of scTCRseq and VIDJIL run on simulated scRNAseq data at different read lengths and coverage. Provided as a separate Excel file. (XLSX 10 kb)
DOI: 10.15468/dl.36v4fj
title: Occurrence Download

description: A dataset containing 346 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anoplogaster cornuta (Valenciennes, 1833)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 346 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038788-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b9pta4
title: Occurrence Download

description: A dataset containing 14471067 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NSW BioNet Atlas"
 ]
}

 The dataset includes 14471067 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038775-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3644744_d5.v1
title: Additional file 1: of Evolutionary history exposes radical diversification among classes of interaction partners of the MLLE domain of plant poly(A)-binding proteins

description: Retrieved Viridiplantae CID genes. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3644747_d1.v1
title: Additional file 1: of The calcified eggshell matrix proteome of a songbird, the zebra finch (Taeniopygia guttata)

description: ProteinGroups. This table contains MaxQuant ProteinGroup output and contains the complete list of identifications, including those not accepted after manual validation or because they did not match the thresholds defined in Materials and Methods. The table also includes relevant additional data such as the complete set of accession numbers forming one group, the calculated molecular weight of each accession, iBAQ intensities and scores. (XLS 687 kb)
DOI: 10.6084/m9.figshare.c.3644747_d2.v1
title: Additional file 2: of The calcified eggshell matrix proteome of a songbird, the zebra finch (Taeniopygia guttata)

description: Peptides. This table contains all peptides of identifications in Additional file 1 in alphabetic order starting with the first amino acid. It also contains additional data such as scores, charge state, and mass accuracy. (XLS 2094 kb)
DOI: 10.6084/m9.figshare.c.3644747_d4.v1
title: Additional file 4: of The calcified eggshell matrix proteome of a songbird, the zebra finch (Taeniopygia guttata)

description: Phospho(STY)sites. This file contains the MaxQuant output for phosphopeptides and also includes peptides not accepted after manual validation. The data include phosphopeptide sequences, localization probabilities and scores. (XLS 95 kb)
DOI: 10.6084/m9.figshare.c.3644750_d3.v1
title: Additional file 3: File S2. of The alignment of enzymatic steps reveals similar metabolic pathways and probable recruitment events in Gammaproteobacteria

description: KEGG weblinks with the functional conservation of metabolic maps in Gammaproteobacteria. (TXT 56Â kb)
DOI: 10.6084/m9.figshare.c.3644750_d5.v1
title: Additional file 1: Table S1. of The alignment of enzymatic steps reveals similar metabolic pathways and probable recruitment events in Gammaproteobacteria

description: Statistics of construction of ESS per metabolic map. Number of reactions, genes, and ESS produced for each metabolic map per organism. (TAB 230Â kb)
DOI: 10.6084/m9.figshare.c.3644753_d1.v1
title: Additional file 2: of Evidence-based practice, research utilization, and knowledge translation in chiropractic: a scoping review

description: Data Abstraction Table. (XLSX 213 kb)
DOI: 10.6084/m9.figshare.c.3644750_d6.v1
title: Additional file 5: File S1. of The alignment of enzymatic steps reveals similar metabolic pathways and probable recruitment events in Gammaproteobacteria

description: Enzymatic Step Sequence database. (ZIP 1300Â kb)
DOI: 10.6084/m9.figshare.c.3644753_d2.v1
title: Additional file 3: of Evidence-based practice, research utilization, and knowledge translation in chiropractic: a scoping review

description: Thematic analysis of articles*. (XLSX 24 kb)
DOI: 10.15468/dl.73fran
title: Occurrence Download

description: A dataset containing 210060 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "OccurrenceStatus is Present",
 "TaxonKey is Arthropoda",
 "Year 2023-2024"
 ]
}

 The dataset includes 210060 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038779-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3645725_d3.v1
title: Additional file 7: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: Interferon sequences identified in the Tasmanian devil genome. Description of data: Md % = percent amino acid identity to opossum (Monodelphis domestica) ortholog, Hs % = percent amino acid identity to Homo sapiens ortholog. * indicates a gene which is not a direct ortholog of a eutherian gene, ** = partial Ensembl prediction. (CSV 564 bytes)
DOI: 10.6084/m9.figshare.c.3645725_d2.v1
title: Additional file 9: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: Additional cytokine sequences identified in the Tasmanian devil genome. Description of data: Md % = percent amino acid identity to opossum (Monodelphis domestica) ortholog, Hs % = percent amino acid identity to Homo sapiens ortholog. * = partial Ensembl prediction. (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3645725_d4.v1
title: Additional file 8: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: TNF family sequences identified in the devil genome. Description of data: Md % = percent amino acid identity to opossum (Monodelphis domestica) ortholog, Hs % = percent amino acid identity to Homo sapiens ortholog. * indicates a gene which is not a direct ortholog of a eutherian gene, ** = partial Ensembl prediction. (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3645725_d6.v1
title: Additional file 11: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: TCR constant regions identified in the Tasmanian devil genome. Description of data: Md % = percent amino acid identity to opossum (Monodelphis domestica) ortholog, Hs % = percent amino acid identity to Homo sapiens ortholog. * = partial Ensembl prediction. (CSV 864 bytes)
DOI: 10.6084/m9.figshare.c.3645725_d5.v1
title: Additional file 1: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: Accession numbers for all data used in this study. Description of data: Table including accession numbers for the genomes, transcriptomes and sequences used in phylogenies in this study. (CSV 3 kb)
DOI: 10.15468/dl.y5wpf8
title: Occurrence Download

description: A dataset containing 337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anoplopoma fimbria (Pallas, 1814)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 337 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038789-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v5mzte
title: Occurrence Download

description: A dataset containing 358 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Carabid beetles in Southern Dolomites from 1983 to 1996"
 ]
}

 The dataset includes 358 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038790-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3645725_d7.v1
title: Additional file 3: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: Presence of Tasmanian devil sequences identified in this study in the devil transcriptomes. (CSV 957 bytes)
DOI: 10.6084/m9.figshare.c.3645725_d8.v1
title: Additional file 2: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: Interleukin sequences identified in the Tasmanian devil genome. Description of data: Md % = percent amino acid identity to opossum (Monodelphis domestica) ortholog, Hs % = percent amino acid identity to Homo sapiens ortholog. * indicates a gene which is not a direct ortholog of a eutherian gene, ** = partial Ensembl prediction. (CSV 3 kb)
DOI: 10.15468/dl.896mt2
title: Occurrence Download

description: A dataset containing 82204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Africa",
 "CoordinateUncertaintyInMeters 0.0-5000.0",
 "Country is South Africa",
 "GadmGid is ZAF",
 "Geometry POLYGON((14.27719 -35.15669,34.10255 -35.15669,34.10255 -21.67132,14.27719 -21.67132,14.27719 -35.15669))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Fabaceae",
 "Year 1998-2023"
 ]
}

 The dataset includes 82204 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038785-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3645725_d10.v1
title: Additional file 5: of Identification and analysis of divergent immune gene families within the Tasmanian devil genome

description: Chemokine sequences identified in the Tasmanian devil genome. Description of data: Md % = percent amino acid identity to opossum (Monodelphis domestica) ortholog, Hs % = percent amino acid identity to Homo sapiens ortholog. * indicates a gene which is not a direct ortholog of a eutherian gene, ** = partial Ensembl prediction. (CSV 3 kb)
DOI: 10.15468/dl.tsy6qk
title: Occurrence Download

description: A dataset containing 172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Satureja subspicata Bartl. ex Vis., Satureja subspicata Bartl., Satureja montana var. subspicata (Bartl. ex Vis.) Vis., Satureja montana var. subspicata (Bartl. ex Vis.) Bernh.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 172 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038792-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3646622_d1.v1
title: Additional file 2: of In epithelial cancers, aberrant COL17A1 promoter methylation predicts its misexpression and increased invasion

description: COL17A1 promoter methylation levels (Î˛-values, TCGA Illumina Infinium Human Methylation 450). (XLSX 231Â kb)
DOI: 10.48544/2b741b92-7153-49cb-ab0c-7b2c0ef3848d
title: ICF-based Tools and Practices to promote the use of ICF
DOI: 10.48544/0abcde0c-2bfe-4b9f-9d5a-aa4f3ac22bd2
title: ICF education continuum: from basic knowledge to practical ICF implementation material.
DOI: 10.6084/m9.figshare.c.3646625_d6.v1
title: Additional file 10: Table S2. of Tools and best practices for data processing in allelic expression analysis

description: Summary of publications and tools that analyze AE data, listing their specific application, the type of statistical test performed, and the required input data. (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.c.3646625_d5.v1
title: Additional file 13: Table S3. of Tools and best practices for data processing in allelic expression analysis

description: Summary of QC problems for AE data, proposed solutions, and potential drawbacks. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.c.3646625_d8.v1
title: Additional file 7: Table S1. of Tools and best practices for data processing in allelic expression analysis

description: Summary of methods for correcting mapping bias in AE analysis. (XLSX 34Â kb)
DOI: 10.6084/m9.figshare.c.3646655_d1.v1
title: Additional file 11: Table S8. of A unified analytic framework for prioritization of non-coding variants of uncertain significance in heritable breast and ovarian cancer

description: Missense Variants Identified In 6 Patients Or More (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3646655_d2.v1
title: Additional file 7: Table S4. of A unified analytic framework for prioritization of non-coding variants of uncertain significance in heritable breast and ovarian cancer

description: Variants identified within natural donor or acceptor splice sites (XLSX 14Â kb)