cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15125/bath-00687
title: Dataset for "Participatory Design in Refugee Camps: Comparison of Different Methods and Visualisation Tools"

description: Shelters for the displaced can suffer from socio-cultural incompatibility and significant levels of occupant dissatisfaction. Participatory Design (PD) is known to help reduce such issues. This is the first study to investigate the effectiveness of different PD methods at engaging and capturing users’ needs for shelter design in refugee camps. It also aimed to identify which visualisation tools are best at: engaging participants; communicating designs (e.g. concept, size and materials); and facilitating proposing modifications.  This is a particularly large study with 16 workshops and 161 participants. Two PD methods were deployed: (i) Design-your-own (where refugees proposed their ideal shelter); (ii) Adapt-a-design (where refugees evaluated and modified pre-existing shelter designs). The shelters in (ii) were presented using three visualisation tools: computer models, physical prototypes and virtual reality.

This dataset includes demographic information of the participants of the workshops, and the participant evaluations of the three visualisation tools tested in the Adapt-a-design workshops.
description: Four series of workshops were conducted to evaluate the use of traditional and contemporary methods as viable tools for capturing user values and requirements for shelters.  These workshops can be categorised under two approaches:
a.	The first approach termed ‘Design your Own’ focused on giving participants a ‘blank canvas’ – in the form of paper, pens and pencils, plasticine, Lego® and a kit-of-parts. Participants were asked to use any of these mediums to conceptualise and articulate their ‘ideal’ shelter. This first workshop approach was one step further than asking the refugees a series of standard questions in order to capture their shelter needs and requirements and can be used at the early design stages.   
b.	The second approach is termed ‘Adapt a Design’ and it utilised four pre-designed shelter typologies (deployable, modular, assemblage and freeform) presented in three ways: b1. Computer-produced architectural drawings and models in 2D and 3D shown on A2 paper and/or projected on screen (ACM); b2. Physical models or prototypes (PP); and b3. Virtual reality (VR). This approach can be implemented after an initial design has been developed by the humanitarian agencies to gain feedback on the proposed design. The evaluation was based on three activities; design assessment, design modification & method assessment.

161 refugees participated in these workshops. At the end of 'adapt a design' workshops, participants were asked to evaluate the visualisation tool used. This data set provides the participants background and responses on the evaluation sheets.
DOI: 10.13145/bacdive2100.20240510.9
title: Arcobacter marinus Kim et al. 2010

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00613
title: Dataset for "Surface-Controlled Water Flow in Nanotube Membranes"

description: This dataset includes raw data for the results presented in the article "Surface-Controlled Water Flow in Nanotube Membranes" and specifically for permeance data (Figure 5 in the article), Raman and X-ray photoelectron spectroscopy (XPS) (Figure 2 in the article), surface zeta potential calculation and additional micrography as applied to carbon nanotube (CNT) and carbon nitride nanotube (CNNT) membranes.
description: Full details of the methodology may be found in the associated manuscript. See the "Characterization of CNNTs Membranes" for details of the field emission scanning electron microscopy, Raman spectroscopy, and X-ray photoelectron spectroscopy. See the "Computational Methodology" section for details concerning the normalised permeance data. See the manuscript's supporting information for details concerning the surface zeta potential raw data.
description: Within the X-ray photoelectron spectroscopy data, "B.E." stands for "Binding Energy".
description: Further relevant documentation may be found in the following resources.

   Casanova, S., Borg, M. K., Chew, Y. M. J., and Mattia, D.,  2019.   Surface-controlled water flow in nanotube membranes.    ACS Applied Materials and Interfaces, 11(1), 1689-1698.   Available from: https://researchportal.bath.ac.uk/en/publications/surface-controlled-water-flow-in-nanotube-membranes.
DOI: 10.15125/bath-00692
title: Dataset for "The Impact of Physical Inactivity, Ageing, and Nutrition on Adipose Tissue Function"

description: These files contain the raw expression (in FPKM) data from RNA sequencing data sets generated from adipose tissue samples collected before and at the end of a long-term head-down tilt bed rest study in healthy young males (ref: AO-13-BR). These files are also RNA sequencing data sets generated from adipose tissue and skeletal muscle samples collected from healthy young and older adults in a cross-sectional study (ref: 16/SW/0003).
description: Adipose tissue samples were collected under local anaesthesia from abdominal subcutaneous adipose tissue depots, 5cm lateral to the umbilicus by needle aspiration. Skeletal muscle samples were collected from the Vastus lateralis using the Bergstrom biopsy technique . All samples were collected following an overnight fast in the rested state.

Samples were briefly cleaned of visible signs of blood, weighed and immediately snap frozen in liquid nitrogen and stored at -80 degrees until analysis.

Tissue samples were thawed and digested in QUIzol reagent, to extract RNA fractions. RNA was DNase treated and QC'd to assess sample quantity and quality.

Samples at a set concentration were sent for next-generation sequencing at the Wellcome Trust Oxford Genomics Centre on a HiSeq4000 Illumina instrument, Deoxynucleotide triphosphate (dUTP) was incorporated into the second strand, to facilitate selective degradation of dUTP-tagged cDNA to generate a cDNA library suitable for sequencing. cDNA was end-repaired, A-tailed, and adapter-ligated. Samples also underwent uridine digestion. Prepared libraries were size-selected, multiplexed across 8 lanes, and quality controlled before paired end sequencing over 12 lanes of a flow cell.
FastQ sequencing files were uploaded to the Galaxy web platform (usegalaxy.org) for quality control analysis. Raw sequencing files were splice-aligned to the GRCh38/hg38 reference genome using Hisat2 with a mapping distance <500 kb between reads. 

Genome annotation was performed using Ensembl against the reference genome.

Expression levels (fragments per kilobase of transcript per million mapped reads (FPKM]) were estimated using Stringtie.
description: Equipment and software used:

- 14G adipose biopsy needle and 10 or 50mL syringe
- Bergstrom biopsy needle.
- Quizol reagent.
- DNase I and DNase buffer (Qiagen)
- RNase/DNase free water
- Phenol-Chloroform-Isoamyl alcohol 25:24:1
- Tris EDTA
- Sodium acetate
- nucleotide free water
- Qubit
- SpectroStar Nano
- Agilent tapestation 4200
- usegalaxy.org
- Hisat2
- Ensembl
- Stringtie
DOI: 10.13145/bacdive2101.20240510.9
title: Arcobacter trophiarum De Smet et al. 2011

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00689
title: Computational Supporting Dataset for "Exploiting Cationic Vacancies for Increased Energy Densities in Dual-Ion Batteries"

description: The dataset contains inputs and outputs for a series of VASP calculations on Mg/Li-intercalated F-doped anatase TiO2, and scripts for processing this DFT data to produce the related manuscript figures.
description: The computational methods and codes used to generate this dataset are described in the associated manuscript: "Exploiting Cationic Vacancies for Increased Energy Densities in Dual-Ion Batteries"
description: Further relevant documentation may be found in the following resources.

   Koketsu, T., Ma, J., Morgan, B., Body, M., Legein, C., Goddard, P., Borkiewicz, O., Strasser, P., and Dambournet, D.,  2020.   Exploiting Cationic Vacancies for Increased Energy Densities in Dual-Ion Batteries.    Energy Storage Materials, 25, 154-163.   Available from: https://researchportal.bath.ac.uk/en/publications/exploiting-cationic-vacancies-for-increased-energy-densities-in-d.
DOI: 10.13145/bacdive2102.20240510.9
title: Campylobacter ureolyticus (Jackson and Goodman 1978) Vandamme et al. 2010

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00586
title: Dataset for "Assessing molecular simulation for the analysis of lipid monolayer reflectometry"

description: Reduced neutron reflectometry dataset associated with a contrast series of DSPC (distearoyl phosphatidylcholine) at the air-water interface. Molecular dynamics simulations at four different areas per molecule are included for three different force-fields. This dataset was used in the publication "Assessing molecular simulation for the analysis of lipid monolayer reflectometry".
description: Within this dataset are neutron reflectometry profiles that were collected at the ISIS Neutron and Muon Source, specifically the SURF instrument. 

Also within this dataset are the trajectories and input files for the molecular dynamics simulations of the lipid monolayers that were run using the GROMACS software.
description: The neutron reflectometry data are presented as received following the experiment and the on-site data reduction process.
description: For technical details for the neutron reflectometry experiment, please see  Hollinshead et al., 2009 (DOI: 10.1021/la8028319). The .dat files are text files in space-separated value format.

The molecular dynamics simulations were all run on the SCARF cluster at the RAL site, over 16 to 32 nodes. The production runs, that consist of 50 ns (simulation time) data, sampled every 0.1 ns. The GROMACS software (http://www.gromacs.org/) is required read the .cpt, .edr, .pdb, .tpr and .trr files. The .log and .gro files may be opened in a text editor. Please refer to the GROMACS reference manual for details of these file formats.
description: Further relevant documentation may be found in the following resources.

   Hollinshead, C. M., Harvey, R. D., Barlow, D. J., Webster, J. R. P., Hughes, A. V., Weston, A., and Lawrence, M. J.,  2009.   Effects of Surface Pressure on the Structure of Distearoylphosphatidylcholine Monolayers Formed at the Air/Water Interface.    Langmuir, 25(7), 4070-4077.  Available from: https://doi.org/10.1021/la8028319.  

   Lindahl, E., Abraham, M. J., Hess, B., and van der Spoel, D.,  2019.   GROMACS 2019.3 Manual.       Version 2019.3.  Zenodo.  Available from: https://doi.org/10.5281/ZENODO.3243834.
DOI: 10.15125/bath-00668
title: Dataset for "The importance of thermal modelling and prototyping in transitional shelter design"

description: The dataset describes monitored environmental conditions of unoccupied shelter prototypes in the refugee camp of Azraq (Jordan). The monitored environmental conditions are temperature and relative humidity every hour both outdoors and indoors. The 7 shelter prototypes include a control shelter without modifications and 6 variants implementing a range of passive measures (increased ventilation, insulation, thermal mass and/or roof shades).
DOI: 10.15125/bath-00691
title: Dataset for "Native Defects and their Doping Response in the Lithium Solid Electrolyte Li7La3Zr2O12"

description: This dataset contains the computational data and analysis for the paper "Native Defects and their Doping Response in the Lithium Solid Electrolyte Li7La3Zr2O12". It includes input and output files for the density functional theory (DFT) calculations, performed using VASP. Data extraction relies on the vasppy Python module (https://github.com/bjmorgan/vasppy, https://doi.org/10.5281/zenodo.801663), available under the MIT licence.
description: All calculations were performed using VASP. Input files for each calculation are contained within the dataset.
description: Relevant data were extracted using the included `vasppy_summary` script available as part of the `vasppy` Python module (https://github.com/bjmorgan/vasppy). Analysis of extracted data available at https://github.com/alexsquires/native_defects_in_llzo.
description: Further relevant documentation may be found in the following resources.

   Squires, A., Scanlon, D., and Morgan, B.,  2019.   Native Defects and their Doping Response in the Lithium Solid Electrolyte Li7La3Zr2O12.         American Chemical Society (ACS).  Available from: https://doi.org/10.26434/chemrxiv.9031346.v3.
DOI: 10.13145/bacdive2103.20240510.9
title: Campylobacter coli (Doyle 1948) Véron and Chatelain 1973

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00693
title: Data relating to the development of pseudoplastic mortars for aerial additive manufacturing

description: This dataset covers the development of pseudoplastic mortars, for aerial additive manufacturing. It covers strength tests, rheology tests, calorimetry tests, deformation tests, force required tests, autonomous extrusion tests and mix formulation.
description: Materials and drone extrusion tests were recorded by camera, observation and manual recording. Test data were input into Microsoft Excel.

Mechanical tests took place on a 50 kN Instron Universal 2630-120/305632 device. Axial force tests were loaded at 5 mm/minute. Settlement test material was compressed at a rate of 2 mm/minute.

Trajectory design tests: Dental plaster was applied to the hand-printed specimens to create flat upper and lower surfaces for strength testing. The devices used were the Instron 2630-120/305632 and Automax 5 50-C46W2.

Flexure: prisms were tested in accordance with BS EN 12390-5:2009 (BSI, 2009), using four-point bending tests to ensure failure by flexure rather than by shear. Compressive strength used an Automax 5 50-C46W2 device in accordance with BS EN 1015-11:1999 (BSI, 1999).

Rheometer tests were conducted on a TA Instruments DHR2 rheometer at a constant temperature of 25°C. Oscillatory tests used disposable aluminium flat plates with a 40 mm base plate and 25 mm diameter upper plate. Flow tests used a steel cross-hatched 40 mm base plate and upper plate. In all rheology tests, a 1000 μm geometry gap was used and material was placed upon the base plate immediately following mixing. Displacement-controlled oscillation tests were conducted over a two-hour period. An angular velocity of 5.0x10−5 radians per second and frequency was maintained at 1 Hz.

Calorimetry tests were conducted using a Calormetrix I-Cal 4000 high precision isothermal calorimeter with chambers maintained at 20°C.

Microscopy tests: a 10 nm gold coating was applied to samples, which were placed in a JEOL SEM6480LV scanning electron microscope.
description: Experimental test data was exported from the laboratory instruments' software and imported by Microsoft Excel.
description: Data has been organised and analysed in Microsoft Excel and figures were assembled in Microsoft PowerPoint to be exported to PDF for use with LaTeX.
DOI: 10.15125/bath-00694
title: Data relating to work concerning the development of a quaternary cementitious system for aerial additive manufacturing

description: Data relating to work undertaken in the final year of the author's PhD involving the development of a fibrous, pseudoplastic quaternary cement system featuring portland cement, calcium aluminate cement, calcium sulphate and fly ash. The dataset includes data from mechanical tests, rheology tests, calorimeter tests, extrusion tests, deformation tests, force required tests and mix formulations.
description: Extrusion and deposition data were collected by observation and manual recording.

Mechanical tests were carried out on an Instron Universal 2630-120/305632. Settlement tests compressed material at a rate of 2 mm/minute. Four-point bending flexural tests were in accordance with British Standard BS EN 12390-5:2009 (BSI,2009). Compressive tests were subsequently conducted in line with British Standard BS EN 1015-11:1999 (BSI, 1999).

Rheometer tests: A TA DHR-2 rheometer was used to conduct the tests with a 25 mm diameter flat upper geometry plate and flat 40 mm diameter lower plate. Flow tests were shear stress-controlled using linear stress ramps ranging from 300 - 6000 Pa and 900 - 50000 Pa. Oscillation tests were conducted over a period of 2000 seconds, covering the open time of the OPC/PFA/CAC/CS mixes and were controlled using an angular displacement of 5x10−5 radians with frequency maintained at 1 Hz.

Calorimetry tests: mixes were placed in a Calormetrix I-Cal 4000 isothermal calorimeter immediately following mixing and vibration. Each mix was tested three times, with the chamber temperature maintained at 7°C, 14.5°C and 22°C respectively. Tests were carried out over a period of forty eight hours.
description: Data was created in the software of the laboratory instruments but all were imported into Microsoft Excel; the Excel files contain all relevant data for the work.
description: Microsoft Excel was used for data organisation and analysis and Microsoft PowerPoint for figures exported to PDF for use in LaTeX.
DOI: 10.15125/bath-00698
title: Dataset for "3D Printed Fouling-Resistant Composite Membranes"

description: This dataset reports the permeance recovery ratio values for flat and wavy composite membranes that were tested by using bovine serum albumin (BSA) solution in a cross-flow ultrafiltration setup. The transmembrane pressure was regulated at 1 bar and the cross-flow Reynolds number (Re) varied between 400 and 1000. In comparison to the flat composite membrane, the wavy membrane showed superior performance in terms of pure water permeance (PWP) (10% higher) and permeance recovery ratio (87% vs 53%) after the first filtration cycle at Re = 1000. Prolong testing showed that the wavy membrane could retain approximately 87% of its initial PWP after 10 complete filtration cycles. The dataset includes the all original data that were generated from this experimental work and also images that were taken by scanning electron microscope (SEM) and digital microscope.
description: Numerical simulations: the conservation of mass and momentum equations, and particle tracing model for steady state and laminar flow conditions were solved by using a commercial CFD software COMSOL MultiphysicsTM v5.4 to elucidate the fluid mechanics of the filtration process of flat and wavy 3D composite membranes.

Fabrication of membrane support: the building material for the membrane support was a UV-cured polyurethane acrylate oligomer with the commercial name VisiJet M3-X. This ABS-like thermoplastic material has a high tensile strength and resistance to temperature along with good durability and stability which make it suitable being a membrane support.34 The support material was hydroxylated wax with the commercial name VisiJet S300. 

Fabrication of the 3D composite membranes: there were three main steps to fabricate the 3D printed composite membrane: (i) printing of the 3D supports, (ii) preparation of selective layer by non-induced phase separation and (iii) deposition of selective layer over the support.

Filtration and anti-fouling performance: the filtration performance of the membranes was evaluated by using a circulating cross-flow apparatus (Figure S1 in the Supporting Information). Prior to the filtration experiments, the membranes were pre-compacted using pure water at 2 bar until steady permeance was reached. The required duration for pre-compaction was just less than 2 hrs.
description: 1. 3D printer (ProJet 3500 HD Max printer, 3D Systems, USA)
2. Contact angle goniometer (OCA machine, Data Physics, Germany)  
3. Scanning electron microscope (JEOL FESEM6301F) and a digital microscope (VHX - 6000, Japan).
4. Crossflow cell
5. AFM (AFM; Nanosurf EasyScan 2 Flex, Switzerland)
DOI: 10.13145/bacdive2119.20240510.9
title: Campylobacter concisus Tanner et al. 1981

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00699
title: Dataset for paper entitled "Do emotions benefit investment decisions? Anticipatory emotion and investment decisions in non-professional investors"

description: This dataset contains behavioural performance and psychophysiological data from four trading games created by Dr Neal Hinvest and Dr Richard Fairchild. The games present participants with the opportunity to invest in a share or keep money in the "bank". The dataset contains data on individuals behaviour while playing the stock market. Measures such as amounts invested insnares and the bank were recorded. Participant performance such as returns made per trial were created. Skin Conductance Response (SCR) was measured while playing the games to measure anticipatory emotion, a covert emotion signal that impacts upon decision-making. Self-reported emotion felt during the tasks was measured via provision of several instances of the Positive and Negative Affect Schedule (PANAS, Watson et al., Journal of Personality and Social Psychology, 54(6), 1063-1070).
description: Participants completed four stock market games where they allocated their (hypothetical) wealth between investing in a share vs. the bank. The bank paid a steady, risk-free, interest while money invested in the share could increase or decrease depending on its behaviour. Anticipatory Skin Conductance Response (aSCR) was measured in a critical time period. Participants also completed the Positive and Negative Affect Scale (PANAS). There were 30 participants, recruited in and around the University of Bath, U.K.
description: The dataset is a .csv file. A codebook is provided as a .txt file
DOI: 10.13145/bacdive2120.20240510.9
title: Campylobacter fetus subsp. fetus (Smith and Taylor 1919) Véron and Chatelain 1973

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00700
title: Dataset for "User testing to improve retrieval and comprehension of information in guidelines to improve medicines safety"

description: This dataset describes a series of user tests designed to improve the retrieval and comprehension of information by nurses from the NHS Injectable Medicines Guide. It includes the research protocol, data collection tools, interview transcriptions and thematic analysis, participant demographics and numerical outcome data.
description: Nvivo version 11 used for thematic analysis.
DOI: 10.15125/bath-00702
title: Data for thesis "Diagnostic and Theranostic Sensor Systems"

description: This repository contains the experimental data discussed in the thesis entitled ‘Diagnostic and Theranostic Sensor Systems’. The data includes; 1H nuclear magnetic resonance (NMR) data and 13C NMR data (as Bruker Aspect NMR FID files and PDF files), mass spectra (as PDF files) and infrared spectra (as MS Word documents) images for all intermediates and probes synthesised and discussed in the experimental section of thesis. Raw data of Fluorescence and UV-VIS analysis (Excel) are included for each fluorescent probe.
description: Full details of the methodology may be found in the associated thesis.
description: All raw NMR data was processed using MNova NMR processing software. This software reads all FID files.
description: Further relevant documentation may be found in the following resources.

   Odyniec, M.,  2020.   Diagnostic and Theranostic Sensor Systems.     Thesis (PhD).    University of Bath.   Available from: https://researchportal.bath.ac.uk/en/studentTheses/diagnostic-and-theranostic-sensor-systems.