cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13625606.v3
title: SARS-CoV-2 viral loads - French Covid19 cohort

description: Dataset from French Covid Cohort 655 patients<br>time_monolix = Time of symptom onset + 14 daysdelay_monolix = Time of hospital admission + 14 days<br>If you use this dataset, please cite as follows :The French COVID cohort was conducted and supported by Inserm in collaboration with the French COVID cohort investigators and study group. <br>This manuscript was prepared using a limited-access data set obtained from Néant et al (https://doi.org/10.1073/pnas.2017962118). <br>The present reanalysis did not involve researchers from INSERM and does not necessarily reflect the opinions or views of the French COVID cohort investigators and study group or INSERM.<br>
DOI: 10.6084/m9.figshare.23552763.v2
title: Scripts and data of the internal tides

description: The plotting scripts and data for the paper titled "Direct evidence of standing internal tide west of the Luzon Strait observed by a large-scale observation array".
DOI: 10.17632/svhr62dxx3
title: Awake hippocampal synchronous events are incorporated into offline neuronal reactivation

description: In each folder, LFP data and spike data during rest and task periods are uploaded.
DOI: 10.6084/m9.figshare.28329842.v3
title: Data for Ecological differentiation among nitrous oxide reducers enhances temperature effects on riverine N2O emissions.xlsx

description: This study examines how clades of microbes responsible for N₂O reduction vary across river systems and how environmental factors like temperature and phosphorus influence these clades and their relationship with N₂O emissions. The research highlights both the often overlooked intra-clade differences and their significant impact on N₂O dynamics, alongside inter-clade differences. These findings enhance our understanding of N₂O reducers and their role in natural ecosystems.
DOI: 10.6084/m9.figshare.3518348.v1
title: Supplement 1. Details of the analysis of pink salmon population data, including spawner and catch data and R code for compiling spawner-recruit pairs and fitting the Ricker model.

description: File List nuSEDS_PINK.csv (md5: 817593c4467c074239177e92379db2bd)<br> Catch_PINK.csv (md5: a9442b3ebafbf77d5437e36b6b0faad3)<br> 1_DataCompilation.R (md5: 1eb5bac1081e5ac2f307b00e4a75c8ef)<br> 2_PopulationAnalysis.R (md5: 017c4ea62556877b4b028bb2b4dc947d) Description The following files are made available with the intention of ensuring our manipulation of data and analysis of pink salmon populations is entirely transparent. We assume that the reader is familiar with the program R, which can be downloaded from the web at cran.r-project.org. Any errors in transcribing and manipulating the data are the sole responsibility of the authors. Additional data and code for the analysis of farm treatments and lice on wild salmon are available upon email request to Stephanie Peacock [stephanie.peacock@ualberta.ca]. nuSEDS_PINK.csv contains spawner data for pink salmon populations in British Columbia, Canada from 1950–2010, provided by Fisheries and Oceans Canada (contact: Bruce Baxter [bruce.baxter@dfo-mpo.gc.ca]). These data include the following columns: Area: Fisheries management area, the spatial scale at which catch data are reported.<br> River: The river at which spawners were enumerated, the finest scale at which spawner data are available.<br> Yr: The year spawners were enumerated.<br> Escapement: The estimated number of spawners in that river in that year, from the nuSEDS database. Catch_PINK.csv contains catch data for pink salmon by management area, provided by different area managers at Fisheries and Oceans Canada (contacts: Pieter VanWill [pieter.vanwill@dfo-mpo.gc.ca] and David Peacock [david.peacock@dfo-mpo.gc.ca]). These data include the following columns: Area: Fisheries management area, the spatial scale at which catch data are reported.<br> Odd_Even: Integer indicated whether the catch was of an odd-year population (= 1) or even year (= 2).<br> Year: The year of the catch.<br> Catch: The number of pieces of pink salmon caught in all fisheries for the given year and area. 1_DataCompilation.R is R code that calls the previous two data files and calculates the number of recruits per spawner. 2_PopulationAnalysis.R is R code that fits the linearized Ricker model to the spawner recruit data, and tests for an effect of sea lice on wild salmon.
DOI: 10.6084/m9.figshare.21603738.v1
title: Suppl_Tab1_weber.docx

description: Description and type of the 23 potentially explanatory variables included in the study to identify risk factors for the occurrence of bovine digital dermatitis (BDD) in 100 dairy herds kept in mountainous regions, collected via a questionnaire which was filled out together with the farmer or herd manager
DOI: 10.6084/m9.figshare.22492753.v1
title: Supplementary File 13

description: Compressed folder containing the alignment used in the phylogenomics tree and the resulting tree.
DOI: 10.6084/m9.figshare.25097513.v3
title: Supplementary Materials

description: Supplementary Materials for manuscript titled "<b>Causal Links Between Diabetes and Chronic Obstructive Pulmonary Disease: A Bidirectional Two-Sample Mendelian Randomization Study</b>".
DOI: 10.17632/kxt5sks9zs
title: mSLAb – an open-source masked stereolithography (mSLA) bioprinter

description: Abstract: 3D bioprinting is a tissue engineering approach using additive manufacturing to fabricate tissue equivalents for regenerative medicine or medical drug testing. For this purpose, biomaterials that provide the essential microenvironment to support the viability of cells integrated directly or seeded after printing are processed into three-dimensional (3D) structures. Compared to extrusion-based 3D printing, which is most commonly used in bioprinting, stereolithography (SLA) offers a higher printing resolution and faster processing speeds with a wide range of cell-friendly materials such as gelatin- or collagen-based hydrogels and SLA is, therefore, well suited to generate 3D tissue constructs. While there have been numerous publications of conversions and upgrades for extrusion-based printers, this is not the case for state-of-the-art SLA technology in bioprinting. The high cost of proprietary printers severely limits teaching and research in SLA bioprinting. With mSLAb, we present a low cost and open source high resolution 3D bioprinter based on masked SLA (mSLA). mSLAb is based on an entry level (€350) desktop mSLA printer (Phrozen Sonic Mini 4K), equipped with temperature control and humidification of the printing chamber to enable the processing of cell-friendly hydrogels. Additionally, the build platform was redesigned for easy sample handling and microscopic analysis of the printed constructs. All modifications were done with off-the-shelf hardware and in-house designed 3D printed components, printed with the same printer that was being modified. We validated the system by printing macroscopic porous scaffolds as well as hollow channels from gelatin-based hydrogels as representative structures needed in tissue engineering. ----------------------------------------------------- Files: Design file name File type Open source license • Base Plate CAD files CC-BY-SA 4.0 • Build Platform 30mm CAD files CC-BY-SA 4.0 • Cable Grommet CAD files CC-BY-SA 4.0 • Case Bottom CAD files CC BY-SA 3.0 • Case Stand CAD files CC BY-SA 4.0 • Case Top CAD files CC BY-SA 3.0 • Keypad Mold Bottom CAD files CC BY-SA 3.0 • Keypad Mold Top CAD files CC BY-SA 3.0 • Molding Stand CAD files CC-BY-SA 4.0 • Printable Petri Dish CAD files CC-BY-SA 4.0 • Sensor Seal Mold CAD files CC-BY-SA 4.0 • mSLAb Code Code CC-BY-SA 4.0 • Circuit Schematic Figures CC-BY-SA 4.0 • Molding Process Video CC-BY-SA 4.0 • Bioprinting Process Video CC-BY-SA 4.0 All CAD-type files consist of modifiable .step files, .stl files for slicing, and ready-to-print .ctb files. • Keypad Mold Top and Keypad Mold Bottom are unmodified parts of "Mmintbox 1 Enclosure" by Vector_Mayhem under CC BY-SA 3.0 • Case Top and Bottom are modified parts of "Mmintbox 1 Enclosure" by Vector_Mayhem under CC BY-SA 3.0. Modifications include holes for the LED, screw terminals, and magnets.
DOI: 10.60893/figshare.apr.27941334.v1
title: SUPPLEMENTARY MATERIAL

description: See the additional detailed experimental data and demonstration videos to support the conclusions of the main manuscript.
DOI: 10.17632/grjx9y4mwj
title: Dataset - Building a 3D geological model of a structurally complex Alpine region (PhD Chapter n°4)

description: This repository contains the 3D geological model in VTK for the display in Paraview sorftware and in GeoModeller source format.
DOI: 10.6084/m9.figshare.14668593.v6
title: A multiplex analysis of phonological and orthographic networks.

description: The study of natural language using a network approach has made it possible to characterize novel properties ranging from the level of individual words to phrases or sentences. A natural way to quantitatively evaluate similarities and differences between spoken and written language is by means of a multiplex network defined in terms of a similarity distance between words. Specifically, we use a multiplex representation of words based on orthographic or phonological similarity to evaluate their structure. Here we report that from the analysis of topological properties of networks, there are different levels of local and global similarity when comparing written vs. spoken structure across 12 natural languages from 4 language families. In particular, it is found that differences between the phonetic and written layers is markedly higher for French and English, while for the other languages analyzed, this separation is relatively smaller. We conclude that the multiplex approach multiplex approach allows us to explore additional properties of the interaction between spoken and written language.
DOI: 10.25381/cput.28805690.v1
title: The integration and utilisation of HRIS in strategic employee performance at a textile factory in the Western Cape

description: <b>Clearance Certificate No | 2022_FBMSREC 060.</b>Transcriptions from the interviews conducted with thirty (30) participants at the Textile Factory.
DOI: 10.6084/m9.figshare.20153516.v1
title: THC_RPL_Simmulation.zip

description: The data is a supporting data for our research work that focuses on the security of RPL protocols in IoT
DOI: 10.6084/m9.figshare.25877728.v1
title: Germline missense TP53 VUS

description: Molecular dynamics simulation of the VUS based on the ClinVar database, the simulation is up to 100 ns.
DOI: 10.6084/m9.figshare.28664648.v3
title: Status of Household Transmission Prevention among Individuals with Chronic Hepatitis B: a Cross-sectional Study in Ethiopian Tertiary Care Setting - Dataset

description: This dataset includes de-identified responses from a cross-sectional study conducted in an Ethiopian tertiary care setting. It contains demographic characteristics, household exposure risk factors, preventive measures taken by individuals with chronic hepatitis B, and knowledge of transmission pathways. Independent variables were; the participant’s demographic details and clinical data that might influence the dependent variables. These includes; Age, sex, marital status, occupation, level of education, region, disease duration, duration of follow up at Tikur Anbessa Specialized Hospital, treatment status and if anybody else in the household is infected. Dependent variables were; the level of knowledge of transmission and prevention of HBV and the level of practices towards household transmission prevention of HBV. The overall knowledge of respondents was assessed using fourteen questions regarding HBV transmission and prevention. Each of the 14 knowledge questionnaires had three possible responses: yes, no, or don’t know. The responses were scored by assigning a value of 1 to correct answers and a value of 0 to wrong answers and don’t know. A total knowledge score was presented on a scale of 100, and to categorize knowledge score, the total score was dichotomized as high ( ≥75 out of 100 (≥11 out of 14)) and low to intermediate if &lt;11(75%) using a top quartile score as the cut of point as defined by previous studies. The practice of individual respondents regarding household transmission prevention of HBV was assessed by seven ‘yes’ or ‘no’ questions. Each correct response was given a score of “1” while an incorrect answer was given a score of “0”. The total score was categorized using a top quartile score, as good for a score between 6 and 7 points and fair to poor if &lt;6(75%). Data were collected using a structured interviewer guided questionnaires and analyzed using descriptive and inferential statistical methods in SPSS 26.Extended Data including supplementary materials and some of large tables were also included here.De-identification Measures:Personal identifiers (e.g., names, addresses, dates of birth) have been removed following the Safe Harbor method. Geographic data is limited to regional classifications only. No identifiable images or biometric data are included.<br>
DOI: 10.6084/m9.figshare.21779045.v2
title: Aliens in caves: the global dimension of biological invasions in subterranean ecosystems

description: Literature-based dataset including the list of alien species and their related information detected in subterranean habitats. <br> The database is described in detail in the following publication: <br> Nicolosi, G., Mammola, S., Verbrugge, L. & Isaia, M. 2023. Aliens in caves: the global dimension of biological invasions in subterranean ecosystems. Biological Reviews. https://doi.org/10.1111/brv.12933
DOI: 10.6084/m9.figshare.22656238.v1
title: Raw data for figures

description: Raw data behind figur 1 to 4 in the manuscript.
DOI: 10.6084/m9.figshare.27948192.v2
title: Datasets of Fault and Fault-Free VAV Terminal Units in Multi-Zone Commercial Buildings: Stuck Dampers and Biased Airflow Sensors

description: Datasets of Fault and Fault-Free VAV Terminal Units in Multi-Zone Commercial Buildings: Stuck Dampers and Biased Airflow Sensors
DOI: 10.6084/m9.figshare.28236869.v1
title: MLLM assessments for walkability

description: The dataset contains 1) the metrics used for assessing the sub-themes of pedestrian safety and attractiveness and the statistical analysis of MLLM assessment results, and 2) street view images.
DOI: 10.6084/m9.figshare.6882032.v1
title: Model of AlN substrate;Tersoff potential;Cfg files of finally deposited AlN film from Molecular dynamics simulation of AlN deposition: temperature and N : Al ratio effects

description: 10800aln.data;AlN.tersoff
DOI: 10.6084/m9.figshare.11653170.v1
title: Screening archaeological bone 1

description: FTIR-ATR raw data files of archaeological bone
DOI: 10.6084/m9.figshare.15128994.v2
title: Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

description: Single Cell Transcripts Bulk Normal2<br>Data List:https://figshare.com/articles/dataset/Single_Cell/14518056<br>
DOI: 10.6084/m9.figshare.29135177.v1
title: uci_har_and_capture24

description: This is the processed uci_har and capture24 dataset. Please extract theme under "notebooks -&gt; data' folder so that the folder "notebooks/data/uci_har" and "notebooks/data/capture24" exists. The final folder structure should look like this <br>notebooks/data/├── speech_commands/├── FashionMNIST/├── capture24/├── uci_har/├── MNIST/├── cifar-100-python/└── cifar-10-batches-py/
DOI: 10.17632/x69b4krsy8
title: Gaussian dispersion analysis in the time domain: Efficient conversion with Padé approximants

description: We present an approach for adapting the Gaussian dispersion analysis (GDA) of optical materials to time-domain simulations. Within a GDA model, the imaginary part of a measured dielectric function is presented as a sum of Gaussian absorption terms. Such a simple model is valid for materials where inhomogeneous broadening is substantially larger than the homogeneous linewidth. The GDA model is the essential broadband approximation for the dielectric function of many glasses, polymers, and other natural and artificial materials with disorder. However, efficient implementation of this model in time-domain full-wave electromagnetic solvers has never been fully achieved. We start with a causal form of an isolated oscillator with Gaussian-type absorption — Causal Dawson-Gauss oscillator. Then, we derive explicit analytical formulas to implement the Gaussian oscillator in a finite-difference time-domain (FDTD) solver with minimal use of memory and floating point operations. The derivation and FDTD implementation employ our generalized dispersive material (GDM) model — a universal, modular approach to describing optical dispersion with Padé approximants. We share the FDTD prototype codes that include automated generation of the approximants and a universal FDTD dispersion implementation that employs various second-order accurate numerical schemes. The codes can be used with non-commercial solvers and commercial software for time-domain simulations of light propagation in dispersive media, which are experimentally characterized with GDA models.
DOI: 10.6084/m9.figshare.7517960.v1
title: Influence of pressure and temperature in the illite crystallinity in Proterozoic sequences: North of Distrito Federal and Goiás, Brazil

description: The Proterozoic sequences in the North of Distrito Federal (Brazil) and in Bezerra and Vila Boa regions (Goiás) comprise carbonates, pelites and sandstones from Bambuí and Paranoá Groups. In Distrito Federal, such units are tectonically overlapped by metasediments of green schist facies of Canastra Group. Among the mineral constituents of the pelitic terms of all these units, phyllosilicates, particularly illite and muscovite, are predominant and are identified using X-ray diffraction with the help of reflection d(001) decomposition. The Kübler Index (Illite Crystallinity Index) complements the interpretation of local diagenesis and the possible bulk tectonic influence on the diagenesis/metamorphism that is a result of the overlap by the thrust fault of Canastra Group on Paranoá and Bambuí groups, in the Distrito Federal region. Results indicate epizone conditions for the samples analyzed from Canastra Group and anchizone for samples from Bambuí and Paranoá Groups. In the rocks at the North of Distrito Federal, the Kübler Index values are lower than in Bezerra - Vila Boa region. Moreover, the contents of Bambuí Group rocks are smaller than Paranoá's in the entire study area; therefore, the influence of tectonic bulk occurs gradually, starting from the highest load point.
DOI: 10.6084/m9.figshare.12937103.v1
title: Multivalent Interactions Drive Nucleosome Binding and Efficient Chromatin Deacetylation by SIRT6

description: The protein deacetylase SIRT6 maintains cellular homeostasis through multiple pathways that include the deacetylation of histone H3 and repression of transcription. Prior work suggests that SIRT6 is associated with chromatin and can substantially reduce global levels of H3 acetylation, but how SIRT6 is able to accomplish this feat is unknown. Here, we describe an exquisitely tight interaction between SIRT6 and nucleosome core particles, in which a 2:1 enzyme:nucleosome complex assembles via asymmetric binding with distinct affinities. While both SIRT6 molecules associate with the acidic patch on the nucleosome, we find that the intrinsically disordered SIRT6 C-terminus promotes binding at the higher affinity site through recognition of nucleosomal DNA. Together, multivalent interactions couple productive binding to efficient deacetylation of histones on endogenous chromatin. Unique among histone deacetylases, SIRT6 possesses the intrinsic capacity to tightly interact with nucleosomes for efficient activity. The HDX raw data for this work is provided.
DOI: 10.17632/5ky5fj7nnj
title: Italian Hate Map Data

description: Tweets gathered for the Italian Hate Map Project. Tweets are in Italian.
DOI: 10.6084/m9.figshare.22689667.v1
title: Geocoded database of health facilities with verified capacity for caesarean section in urban Nigeria

description: A geocoded list of facilities from both public and non-public sectors capable of providing comprehensive emergency obstetric care (EmOC) for 15 selected urban conurbations in Nigeria ( Aba, Abuja, Benin City, Ibadan, Ilorin, Jos, Kaduna, Kano, Lagos, Maiduguri, Onitsha, Owerri, Port Harcourt, Uyo, and Warri ). We proxied and defined the availability of comprehensive EmOC services as any health facility that can offer caesarean section (CS) services
DOI: 10.6084/m9.figshare.24224995.v1
title: Dataset for the Project 'A Prompt Book for Turning a Large Language Model into a Startup Digital Assistant'

description: This dataset consists of a systematic analysis of 100 startup-related questions. These questions were categorized based on their <b>underlying purposes</b> and according to the <b>five pillars of startups</b>. This results in the identification of distinct purposes that can be used to classify startup-related inquiries. The identified purposes include decision-making, seeking information, seeking advice, and finally reflecting on experience. On the other hand, regarding the startup pillars, we classified these 100 questions into five startup pillars i.e. team, product or service, business model, general, and market.
DOI: 10.6084/m9.figshare.25992871.v1
title: <b>Feedback and financial incentives for reducing cellphone use while driving: a randomized trial</b>

description: Importance: Handheld phone use while driving is a major factor in vehicle crashes. Scalable interventions are needed to encourage drivers to put down their phones.Objective: Test whether interventions involving social comparison feedback and/or incentives can reduce drivers’ handheld phone use.Design: Randomized controlled trial.Setting: Interventions were administered nationwide in the U.S. via a mobile application in the context of a usage-based insurance program.Participants: Progressive Insurance customers were eligible if enrolled in the Snapshot Mobile program for 30-70 days. 17,663 customers were invited by email to participate, and 2,109 opted in and were randomized.Interventions: Participants were randomly assigned to one of six trial arms for a 7-week intervention period: 1) control; 2) feedback, weekly push notification about how their handheld phone use compared to that of similar others; 3) standard incentive, max $50 award at the end of the intervention based on how their handheld use compared to similar others’; 4) standard incentive + feedback, combining interventions of arms 2 and 3; 5) reframed incentive + feedback, max $7.15 award each week, framed asparticipant’s to lose; 6) doubled reframed incentive + feedback, max $14.29 weekly loss-framed award.Intervention dates: May 13-June 30, 2019.Main Outcome and Measure: 100 Proportion of drive time engaged in handheld phone use in seconds/hour (s/h) of driving.Results: Analysis completed December 22, 2023. 2,020 drivers finished the intervention period (68% female; median (IQR) age 30 (25, 39). Median (IQR) baseline handheld phone use was 216 (72, 480) s/h. Relative to control, feedback and standard incentive participants did not reduce their handheld phone use. Standard incentive + feedback participants reduced their use by −38 (95% CI: −69 to −8) s/h, P = .045; reframed incentive + feedback participants reduced their use by −56 (95% CI: −87 to −26) s/h, P &lt; .001; and doubled reframed incentive + feedback participants reduced their use by −42 s/h (95% CI: −72 to −13), P = .007. The five active treatment arms did not differ significantly from each other.Conclusions and Relevance: In this randomized trial, providing social comparison feedback plus incentives reduced handheld phone use while driving.Requests for a deidentified dataset and data dictionary can be made to the corresponding author at mucio.delgado@pennmedicine.upenn.edu. The data will be made available with investigator support to researchers whose proposed use of the data has been approved by the authors.