cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7717148
title: Honey Particle Detection Dataset

description: A synthetically generated dataset of honey samples observed by a digital microscope. The goal of this dataset is to train machine learning models to detect the pollen found in the images. This dataset contains 500 images with three different classes of particles commonly found in honey. The annotations are provided in YOLO format in a different directory. Each annotation is associated with the image by an unique ID. The images follow the naming convention "image_{ID}.png" and the annotations follow the convention "image_{ID}.txt". This dataset has been created by Sonicat Systems and is published under Creative Commons Attribution Non-Commercial Share Alike license.
DOI: 10.5281/zenodo.7717147
title: Honey Particle Detection Dataset

description: A synthetically generated dataset of honey samples observed by a digital microscope. The goal of this dataset is to train machine learning models to detect the pollen found in the images. This dataset contains 500 images with three different classes of particles commonly found in honey. The annotations are provided in YOLO format in a different directory. Each annotation is associated with the image by an unique ID. The images follow the naming convention "image_{ID}.png" and the annotations follow the convention "image_{ID}.txt". This dataset has been created by Sonicat Systems and is published under Creative Commons Attribution Non-Commercial Share Alike license.
DOI: 10.7284/152283
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise LMG0402 using a SeaBird SBE-911+ instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152233
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise LMG0411 using a SeaBird SBE-911+ instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/149434
title: Expendable Probe data collected during research cruise LMG0413A using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/149435
title: Expendable Probe data collected during research cruise LMG0413A using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.25345/c5vd6pf4q
title: MassIVE MSV000091468 - NAD depletion mediates cytotoxicity in human neurons with autophagy deficiency
title: Metabolic profiling in wild type and autophagy-deficient human embryonic stem cell (hESC)-derived neurons after 3 weeks of neuronal differentiation. Autophagy is a homeostatic process critical for cellular survival, and its malfunction is implicated in myriad human diseases including neurodegeneration. Loss of autophagy contributes to cytotoxicity and tissue degeneration, but the mechanistic understanding of this phenomenon remains elusive. Here we have generated autophagy-deficient human embryonic stem cells (hESCs), from which we have established human neuronal platform to investigate how loss of autophagy affects neuronal survival. ATG5 deficient neurons exhibit basal cytotoxicity accompanied by metabolic defects. Depletion of nicotinamide adenine dinucleotide (NAD) due to hyperactivation of NAD-consuming enzymes is found to trigger cell death via mitochondrial depolarisation in ATG5 deficient neurons. Boosting intracellular NAD levels improve cell viability by restoring mitochondrial bioenergetics and proteostasis in ATG5 deficient neurons. Our findings elucidate a mechanistic link between autophagy deficiency and neuronal cell death that can be targeted for therapeutic interventions in neurodegenerative and lysosomal storage diseases associated with autophagic defect.
DOI: 10.6084/m9.figshare.22251043
title: COMMSENV-22-1231B_DataForFigureReplication.xlsx

description: Data necessary to recreate figures 2, 3, 4, 5, and S2 in: M.R. Johnson, B.M. Conrad, D.R. Tyner (2023), Creating Measurement-Based Oil and Gas Sector Methane Inventories using Source-Resolved Aerial Surveys, <em>Communications Earth & Environment</em> (in press).
DOI: 10.6084/m9.figshare.22251043.v1
title: COMMSENV-22-1231B_DataForFigureReplication.xlsx

description: Data necessary to recreate figures 2, 3, 4, 5, and S2 in: M.R. Johnson, B.M. Conrad, D.R. Tyner (2023), Creating Measurement-Based Oil and Gas Sector Methane Inventories using Source-Resolved Aerial Surveys, <em>Communications Earth & Environment</em> (in press).
DOI: 10.6073/pasta/2f38c66ab4ba4f0d3ddceb619704fa7e
title: SBC LTER: Santa Cruz Island: Aggregated mean abundance of black surfperch (Embiotoca jacksoni) and prey availability, 1994-2008

description: These data are the annual mean abundances of three age-classes of black surfperch and their prey at each of 11 sites at Santa Cruz Island, California. Reported values are a) the average number of adult black surfperch, young-of-year black surfperch, and one year-old black surfperch per 40m x 2m transect (for all transects), and b) total food availability (grams per 0.1 m squared) at each site. Food availability includes biomass of caprellid and gammarid amphipods and is calculated from the mean density within Gelidium spp. (for caprellids) and all other foliose or turfing algae (for gammarids). The data also include one year lags for each variable, i.e. the value of the variable at that site in the previous year.
DOI: 10.6084/m9.figshare.13318124
title: A comprehensive phylogeny and revised taxonomy illuminate the origin and diversification of the global radiation of Papilio (Lepidoptera: Papilionidae)

description: This folder contains: Data 1 - Phylogenetic analyses of Papilio Data 2 - Molecular dating of Papilio Data 3 - Geographic distributions and historical biogeographic analyses Data 4 - Diversification analyses <br>
DOI: 10.7284/152288
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise LMG0414 using a SeaBird SBE-911+ instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152292
title: Expendable Probe data collected during research cruise LMG0414 using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.25345/c5qn5zn2j
title: MassIVE MSV000091469 - Proteomic Fingerprinting of Prostate Cancer Progression Through Library-Free DIA-MS Reveals Systematic and Conserved Pathway Dysregulation
title: Prostate cancer is the second-most prevalent cancer in men and the cancer with the highest age-adjusted incidence overall. With rates of diagnoses positively correlating with advanced age, the aging populations in many high cancer rate countries mandate the development of facile strategies to accurately identify and stratify this disease. Protein biomarkers are used prominently in prostate cancer diagnosis and therapeutic monitoring but are often criticized for inaccuracy that leads to under or overdiagnosis, incorrect treatment, or false indication of severity. Taken together, there has never been a more pressing need to uncover biomolecular fingerprints or protein panels that enable minimally invasive cancer diagnoses and the ability to confidently stratify disease states. Research towards this goal has traditionally been limited by the lack of model organisms that mimic the unique genotypic and phenotypic characteristics associated with discrete prostate cancer severities. The recently developed benign prostate hypertrophy to prostate cancer (BCaP) cell model removes this limitation, enabling confident association of protein expression changes with cancer phenotype. Herein, we investigate three progressive prostate cancer phenotypes using library-free data-independent acquisition mass spectrometry. Identifying 91,785 peptides and quantifying 6,614 proteins, we reveal 1,242 biomolecular signatures dysregulated in accordance with cancer progression. Highlighting 7 distinct diagnostic expression patterns within this protein cohort, we reveal the progressive reorganization of critical biological processes such as kinetochore formation, cytoskeletal organization, metabolic processing, and interferon signaling. We also provide a topical comparison of transcript and protein level analyses, articulating the importance of proteomic measurements and the need for regular, multimodal analysis. Together, this study presents a primary investigation of the protein-level perturbations observed in a novel progressive cell model, pinpointing a collection of proteins that demonstrate potential for biomarker validation and utility within protein-centric prostate cancer diagnosis.
DOI: 10.35078/ajn7l0
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Teófilo Otoni| Município: Araçuaí

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.34740/kaggle/dsv/4829152
title: HCPL Models
DOI: 10.5281/zenodo.7711152
title: Structural adaptation of the single-stranded DNA-binding protein C-terminal to DNA metabolizing partners guides in-hibitor design

description: Fluorescence anisotropy metadata and polarization values Isotermal titration calorimetry raw files (protein-ligand and background titrations) Input files for PRALINE calculation in FASTA format CSV file containing the SSB sequences in SMILES format and binding data The input files for the ExoI-bound wtSSB-Ct, E1-sSSB-Ct, and E2-sSSB-Ct and RecO-bound wtSSB-Ct, R1-sSSB-Ct, and R2-sSSB-Ct together with the corresponding trajectory files
DOI: 10.5281/zenodo.7711151
title: Structural adaptation of the single-stranded DNA-binding protein C-terminal to DNA metabolizing partners guides in-hibitor design

description: Fluorescence anisotropy metadata and polarization values Isotermal titration calorimetry raw files (protein-ligand and background titrations) Input files for PRALINE calculation in FASTA format CSV file containing the SSB sequences in SMILES format and binding data The input files for the ExoI-bound wtSSB-Ct, E1-sSSB-Ct, and E2-sSSB-Ct and RecO-bound wtSSB-Ct, R1-sSSB-Ct, and R2-sSSB-Ct together with the corresponding trajectory files
DOI: 10.6084/m9.figshare.22209655.v1
title: Feasibility and Acceptability of Implementing a Practice Guideline for the use of High Flow Nasal Cannula in Critically Ill Patients who have Hypoxemia: a Multi-centre Study in Nepal

description: The study aimed to evaluate the feasibility and acceptability of using a high-flow nasal cannula (HFNC) guideline in Nepal's intensive care units (ICUs). The researchers measured the proportion of eligible patients who received HFNC, compared the oxygenation measures between those who survived and those who did not, and surveyed healthcare workers for their feedback. They found that the guideline was associated with a small increase in HFNC use and was feasible, acceptable, and appropriate for use in clinical practice in ICUs in Nepal. Patients who successfully used HFNC had better oxygenation measures than those who did not, and healthcare workers rated the guideline highly.<br>
DOI: 10.7284/152289
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise LMG0501 using a SeaBird SBE-911+ instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152290
title: Expendable Probe data collected during research cruise LMG0501 using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152291
title: Expendable Probe data collected during research cruise LMG0501 using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.35078/flcgn7
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Januária | Município: Manga

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.6084/m9.figshare.22250698.v1
title: Supplementary Table 1

description: <strong>Supplementary Table 1.</strong> Echocardiographic characteristics in <em>db/db</em> mice treated with GCGR mAb or IgG (as control) for 4 weeks.
DOI: 10.7284/152293
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise LMG0502 using a SeaBird SBE-911+ instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152294
title: Expendable Probe data collected during research cruise LMG0502 using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5066/p9yzx7g6
title: Terrestrial Invertebrate Diversity and Occurrence in Restored Hardwood Forest Floodplains, Indiana, United States, June &amp;ndash; August 2016

description: To determine the progress of restoration, insect populations were sampled at four mitigation sites using walking butterfly transects and Malaise/pitfall insect traps. The data consists of date, time, type and placement of traps, as well as number and order of species found.
DOI: 10.5519/qd.dfaklbca
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1589 records)
DOI: 10.5066/p9br3681
title: Stratigraphic and fault surfaces from the Three-Dimensional Geologic Map of the southeastern Gabbs Valley Geothermal Area

description: This digital dataset represents the 3D fault and stratigraphic surfaces of the three dimensional geologic map of the southeastern Gabbs Valley, Nevada. The data define the easting, northing, and elevations (meters, NAD 83 Zone 11N) of points that define the top and bottom contacts of stratigraphic units and fault surfaces.
DOI: 10.6084/m9.figshare.22251229
title: UK RTE

description: Description
DOI: 10.6084/m9.figshare.22251229.v1
title: UK RTE

description: Description
DOI: 10.6084/m9.figshare.22251280
title: AU Attachment only

description: Description Testing
DOI: 10.6084/m9.figshare.22251280.v1
title: AU Attachment only

description: Description Testing
DOI: 10.6084/m9.figshare.21632627
title: input_figS1_H_S2_A_calnexin

description: This dataset contains data used to generate panels S1H and S2A for calnexin in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.6084/m9.figshare.21632627.v3
title: input_figS1_H_S2_A_calnexin

description: This dataset contains data used to generate panels S1H and S2A for calnexin in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.6084/m9.figshare.21632627.v2
title: input_figS1_E_F_calnexin

description: This dataset contains data used to generate panels S1E and F for calnexin in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.6084/m9.figshare.21632672
title: input_figS1_H_S2_A_GRP78

description: This dataset contains data used to generate panels S1H and S2A for GRP78 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.6084/m9.figshare.21632672.v3
title: input_figS1_H_S2_A_GRP78

description: This dataset contains data used to generate panels S1H and S2A for GRP78 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.6084/m9.figshare.21632672.v2
title: input_figS1_E_F_GRP78

description: This dataset contains data used to generate panels S1E and F for GRP78 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.6084/m9.figshare.21632690
title: input_figS1_H_S2_A_GRP94

description: This dataset contains data used to generate panels S1H and S2A for GRP94 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.6084/m9.figshare.21632690.v2
title: input_figS1_E_F_GRP94

description: This dataset contains data used to generate panels S1E and F for GRP94 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.6084/m9.figshare.21632690.v3
title: input_figS1_H_S2_A_GRP94

description: This dataset contains data used to generate panels S1H and S2A for GRP94 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.6084/m9.figshare.21632714.v2
title: input_figS1_E_F_PDI

description: This dataset contains data used to generate panels S1E and F for PDI in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.6084/m9.figshare.21632714
title: input_figS1_H_S2_B_PDI

description: This dataset contains data used to generate panels S1H and S2B for PDI in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.6084/m9.figshare.21632714.v4
title: input_figS1_H_S2_B_PDI

description: This dataset contains data used to generate panels S1H and S2B for PDI in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.6084/m9.figshare.21632714.v3
title: input_figS1_H_S2_A_PDI

description: This dataset contains data used to generate panels S1H and S2A for PDI in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.7284/152234
title: Expendable Probe data collected during research cruise LMG0503 using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152235
title: Expendable Probe data collected during research cruise LMG0503 using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition