cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21233/jwp6-jp64
title: Denton Lake diatom dataset

description: Raw data for the Denton Lake diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.qyxtxe
title: Occurrence Download

description: A dataset containing 388120 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is VIS - Fishes in inland waters in Flanders, Belgium"
 ]
}

 The dataset includes 388120 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026094-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57703/ce-ctvfv
title: C31_SurfaceTopographyChallenge_IWM

description: Surface Topography Challenge 2022, Fraunhofer Institute for Mechanics of Materials IWM, Woehlerstr. 11 | 79108 Freiburg, Germany, Dr. Tobias Amann, tobias.amann@iwm.fraunhofer.de, +49 761 5142-208
DOI: 10.21233/mtxs-p392
title: Kardashynskyi pollen dataset

description: Raw data for the Kardashynskyi pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/wqj6-ws96
title: Fifth Pond pollen surface sample dataset

description: Raw data for the Fifth Pond pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.24417/bmdc.be:dataset:2960
title: Princess Elizabeth Zone for renewable Energy in the Belgian Part of the North Sea

description: This dataset represents the location of the Princess Elizabeth zone in the Belgian Part of the North Sea as described in the Royal Decree of May 22th, 2019, establishing a marine spatial plan for the period 2020-2026. Art. 8. § 3.
DOI: 10.21233/fz96-cg78
title: LDDsite1543 ostracode surface sample dataset

description: Raw data for the LDDsite1543 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/7sdk-v154
title: Thurston Pond diatom surface sample dataset

description: Raw data for the Thurston Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/2m9b-vp64
title: LDDsite1313 ostracode surface sample dataset

description: Raw data for the LDDsite1313 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.m4ss52
title: Occurrence Download

description: A dataset containing 2550 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kallima inachus Boisduval, 1836"
 ]
}

 The dataset includes 2550 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026110-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/c9zg-6x76
title: Birdbath Lake diatom dataset

description: Raw data for the Birdbath Lake diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.rxyy5a
title: Occurrence Download

description: A dataset containing 282 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Sistemática y distribución actual de los Agave spp mezcaleros"
 ]
}

 The dataset includes 282 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026111-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/a8q4-0q54
title: Long Lake (Ha.) water chemistry dataset

description: Raw data for the Long Lake (Ha.) water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/xmz7-k180
title: Waterfall Divide plant macrofossil dataset

description: Raw data for the Waterfall Divide plant macrofossil dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.48436/q16mn-kpc28
title: Raw and processed data for Publication Sensor-integrated gut-on-a-chip for Monitoring senescence-mediated changes in the intestinal barrier
title: Raw and processed data for DOI: 10.1039/d4lc00896k

description: Raw and processed data for Publication Sensor-integrated gut-on-a-chip for Monitoring senescence-mediated changes in the intestinal barrier, DOI: 10.1039/d4lc00896k

The Folders correspond to the raw and processed data visualized in the figures of the main article and the supporting Information.

Structure

The Folder structure is organized based on the figures in the publication and contains:- Impedance measurments and processed data stored as .txt, .xlsx and .prism files- Plate Reader Export files as .csv- FITC Diffusion data processed and stored as .xlsx and .pzfx (GraphPad) files.- Flourescence Imaging data stored as .tiff files- Cell size distributions as .jpg and .xlsx files- RT-qPCR raw files (melting curves, Ct values, run parameters) and processing data as .xls and .prism files

In the subfolders where additional explanation of the dataset is required .txt files are added

Remarks

The PDF documents are additionally included in the PDF/A format.The PRISM and PZFX files can be viewed with the GraphPad Prism software.The Python script was tested with Python 3.12, the dependencies are listed in requirements.txt.

Licenses

The data is licensed under CC-BY, the code is licensed under MIT.
description: The incidence of inflammatory bowel disease among the elderly has significantly risen in recent years, posing a growing socioeconomic burden to aging societies.Moreover, non-gastrointestinal diseases, also prevalent in this demographic, have been linked to intestinal barrier dysfunction, thus highlighting the importance of investigating aged-mediated changes within the human gut.While gastrointestinal pathology often involves an impaired gut barrier, the impact of aging on the human gastrointestinal barrier function remains unclear.To explore the effect of senescence, a key hallmark of aging, on gut barrier integrity, we established and evaluated an in vitro gut-on-a-chip model tailored to investigate barrier changes by the integration of an impedance sensor.Here, a microfluidic gut-on-a-chip system containing integrated membrane-based electrode microarrays is used to non-invasively monitor epithelial barrier formation and senescence-mediated changes in barrier integrity upon treating Caco-2 cells with 0.8 μg mL^−1 doxorubicin (DXR), a chemotherapeutic which induces cell cycle arrest.Results of our microfluidic human gut model reveal a DXR-mediated increase in impedance and cell hypertrophy as well as overexpression of p21, and CCL2, indicative of a senescent phenotype.Combined with the integrated electrodes, monitoring ∼57% of the cultivation area in situ and non-invasively, the developed chip-based senescent-gut model is ideally suited to study age-related malfunctions in barrier integrity.
DOI: 10.48436/v9g29-fxf41
title: Raw and processed data for Publication Sensor-integrated gut-on-a-chip for Monitoring senescence-mediated changes in the intestinal barrier
title: Raw and processed data for DOI: 10.1039/d4lc00896k

description: Raw and processed data for Publication Sensor-integrated gut-on-a-chip for Monitoring senescence-mediated changes in the intestinal barrier, DOI: 10.1039/d4lc00896k

The Folders correspond to the raw and processed data visualized in the figures of the main article and the supporting Information.

Structure

The Folder structure is organized based on the figures in the publication and contains:- Impedance measurments and processed data stored as .txt, .xlsx and .prism files- Plate Reader Export files as .csv- FITC Diffusion data processed and stored as .xlsx and .pzfx (GraphPad) files.- Flourescence Imaging data stored as .tiff files- Cell size distributions as .jpg and .xlsx files- RT-qPCR raw files (melting curves, Ct values, run parameters) and processing data as .xls and .prism files

In the subfolders where additional explanation of the dataset is required .txt files are added

Remarks

The PDF documents are additionally included in the PDF/A format.The PRISM and PZFX files can be viewed with the GraphPad Prism software.The Python script was tested with Python 3.12, the dependencies are listed in requirements.txt.

Licenses

The data is licensed under CC-BY, the code is licensed under MIT.
description: The incidence of inflammatory bowel disease among the elderly has significantly risen in recent years, posing a growing socioeconomic burden to aging societies.Moreover, non-gastrointestinal diseases, also prevalent in this demographic, have been linked to intestinal barrier dysfunction, thus highlighting the importance of investigating aged-mediated changes within the human gut.While gastrointestinal pathology often involves an impaired gut barrier, the impact of aging on the human gastrointestinal barrier function remains unclear.To explore the effect of senescence, a key hallmark of aging, on gut barrier integrity, we established and evaluated an in vitro gut-on-a-chip model tailored to investigate barrier changes by the integration of an impedance sensor.Here, a microfluidic gut-on-a-chip system containing integrated membrane-based electrode microarrays is used to non-invasively monitor epithelial barrier formation and senescence-mediated changes in barrier integrity upon treating Caco-2 cells with 0.8 μg mL^−1 doxorubicin (DXR), a chemotherapeutic which induces cell cycle arrest.Results of our microfluidic human gut model reveal a DXR-mediated increase in impedance and cell hypertrophy as well as overexpression of p21, and CCL2, indicative of a senescent phenotype.Combined with the integrated electrodes, monitoring ∼57% of the cultivation area in situ and non-invasively, the developed chip-based senescent-gut model is ideally suited to study age-related malfunctions in barrier integrity.
DOI: 10.5281/zenodo.15341158
title: pseudobulk RUV: Datasets and GSEA results

description: This repository encompases the following datasets:



 Raw data downloaded from the  Chan Zuckerberg CELL by GENE Discover (CZ CELLxGENE Discover) platform: 230126_lupusdataSCE_raw.zip

Processed data from the control subset, both single cell and pseudobulk files: controlsubset.zip 

Processed data from the case study subset, both single cell and pseudobulk files: CSsubset.zip

Pseudobulk pseudosamples generated from the samples in the case study subset: pbps10rep_studycasemix.zip

Cytosolic ribosome genes used as negative control genes: Genes_Gagnon.txt

Set of negative control genes from the scMerge package: ncgSCmerge.txt

Genes from the ISG signature: ISGsignature.txt

Gene set enrichment analysis results (from the case study): GSEAresultsCS.zip
DOI: 10.5281/zenodo.15341157
title: pseudobulk RUV: Datasets and GSEA results

description: This repository encompases the following datasets:



 Raw data downloaded from the  Chan Zuckerberg CELL by GENE Discover (CZ CELLxGENE Discover) platform: 230126_lupusdataSCE_raw.zip

Processed data from the control subset, both single cell and pseudobulk files: controlsubset.zip 

Processed data from the case study subset, both single cell and pseudobulk files: CSsubset.zip

Pseudobulk pseudosamples generated from the samples in the case study subset: pbps10rep_studycasemix.zip

Cytosolic ribosome genes used as negative control genes: Genes_Gagnon.txt

Set of negative control genes from the scMerge package: ncgSCmerge.txt

Genes from the ISG signature: ISGsignature.txt

Gene set enrichment analysis results (from the case study): GSEAresultsCS.zip
DOI: 10.15468/dl.dpwr9w
title: Occurrence Download

description: A dataset containing 291 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is da86174a-a605-43a4-a5e8-53d484152cd3",
 "TaxonKey is Ficus lyrata Warb."
 ]
}

 The dataset includes 291 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026112-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/ww5z-bw78
title: Vlietlanden II & III pollen dataset

description: Raw data for the Vlietlanden II & III pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/5kn2-7v37
title: ELA Lake #227 water chemistry dataset

description: Raw data for the ELA Lake #227 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.25625/r1cn7n/490lne
title: wire_strength_6_file_4.tab

description: :unav
DOI: 10.25625/r1cn7n/79gchd
title: wire_strength_6_file_8.tab

description: :unav
DOI: 10.25625/r1cn7n/cxnx51
title: wire_strength_4_file_2.tab

description: :unav
DOI: 10.25625/r1cn7n/ehswns
title: wire_strength_6_file_7.tab

description: :unav
DOI: 10.25625/r1cn7n/fwenpm
title: wire_strength_6_file_1.tab

description: :unav
DOI: 10.25625/r1cn7n/ircs7u
title: wire_strength_3_file_8.tab

description: :unav
DOI: 10.25625/r1cn7n/jkxqnn
title: wire_strength_2_file_3.tab

description: :unav
DOI: 10.25625/r1cn7n/mjvqbo
title: wire_strength_3_file_7.tab

description: :unav
DOI: 10.25625/r1cn7n/pbbihj
title: wire_strength_3_file_2.tab

description: :unav
DOI: 10.25625/r1cn7n/v1flkw
title: wire_strength_4_file_3.tab

description: :unav
DOI: 10.25625/r1cn7n/xq9hoq
title: wire_strength_6_file_6.tab

description: :unav
DOI: 10.25625/r1cn7n/xsejx5
title: wire_strength_6_file_5.tab

description: :unav
DOI: 10.25625/r1cn7n/zlolda
title: wire_strength_4_file_7.tab

description: :unav
DOI: 10.25625/r1cn7n/3inzbo
title: wire_strength_2_file_8.tab

description: :unav
DOI: 10.25625/r1cn7n/4ud5vi
title: wire_strength_2_file_5.tab

description: :unav
DOI: 10.25625/r1cn7n/6x72yx
title: wire_strength_4_file_6.tab

description: :unav
DOI: 10.25625/r1cn7n/bthuz0
title: wire_strength_3_file_6.tab

description: :unav
DOI: 10.25625/r1cn7n/fpsq6m
title: wire_strength_3_file_3.tab

description: :unav
DOI: 10.25625/r1cn7n/gs4u2r
title: wire_strength_2_file_7.tab

description: :unav
DOI: 10.25625/r1cn7n/gsr9dr
title: wire_strength_3_file_1.tab

description: :unav
DOI: 10.25625/r1cn7n/hjjmrj
title: wire_strength_2_file_4.tab

description: :unav
DOI: 10.25625/r1cn7n/j08ivw
title: wire_strength_2_file_2.tab

description: :unav
DOI: 10.25625/r1cn7n/ncmvqw
title: wire_strength_3_file_5.tab

description: :unav
DOI: 10.25625/r1cn7n/qhmu2p
title: wire_strength_2_file_9.tab

description: :unav
DOI: 10.25625/r1cn7n/s4hk5k
title: wire_strength_4_file_8.tab

description: :unav
DOI: 10.25625/r1cn7n/sdpvoh
title: wire_strength_6_file_3.tab

description: :unav
DOI: 10.25625/r1cn7n/vacso2
title: wire_strength_4_file_9.tab

description: :unav
DOI: 10.25625/r1cn7n/z8ruys
title: wire_strength_6_file_2.tab

description: :unav
DOI: 10.25625/r1cn7n/zevejz
title: wire_strength_4_file_4.tab

description: :unav
DOI: 10.25625/r1cn7n/zlfepr
title: wire_strength_2_file_1.tab

description: :unav
DOI: 10.25625/r1cn7n/zqlmrf
title: wire_strength_2_file_6.tab

description: :unav
DOI: 10.25625/r1cn7n/zrrffc
title: wire_strength_3_file_9.tab

description: :unav
DOI: 10.21233/regs-nx36
title: Trout Peatland A testate amoebae surface sample dataset

description: Raw data for the Trout Peatland A testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.2qpqdz
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pavo muticus Linnaeus, 1766"
 ]
}

 The dataset includes 165 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026113-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/k768-8771
title: Unity Pond diatom bottom sample dataset

description: Raw data for the Unity Pond diatom bottom sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/yme0-vz26
title: Tutsieta Lake water chemistry dataset

description: Raw data for the Tutsieta Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.3ksczm
title: Occurrence Download

description: A dataset containing 710 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aedes alboannulatus (Macquart, 1850)"
 ]
}

 The dataset includes 710 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026115-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/881c-y761
title: Crawford Lake water chemistry dataset

description: Raw data for the Crawford Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/1p6w-0t74
title: McIntosh Farm ostracode surface sample dataset

description: Raw data for the McIntosh Farm ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/z4r2-qn77
title: Channel Lake water chemistry dataset

description: Raw data for the Channel Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.4tdwag
title: Occurrence Download

description: A dataset containing 181 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aedes luteocephalus (Newstead, 1907)"
 ]
}

 The dataset includes 181 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026116-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqmd56
title: Occurrence Download

description: A dataset listing the 1838 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Monaco",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 1838 records were derived from 210 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026107-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/syg0-4673
title: Clear Lake (Erie) diatom surface sample dataset

description: Raw data for the Clear Lake (Erie) diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.hzkn3e
title: Occurrence Download

description: A dataset containing 559 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aedes caecus (Theobald, 1901)"
 ]
}

 The dataset includes 559 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026117-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/7xcd-fs40
title: 3PMA pollen surface sample dataset

description: Raw data for the 3PMA pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.