cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2gx8av
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Fossil",
 "BasisOfRecord is Living Specimen"
 ]
 },
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Crotalus polystictus (Cope, 1865)"
 ]
}

 The dataset includes 42 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108100-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.l8owgk
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Ozoroa pulcherrima (Schweinf.) R.Fern. & A.Fern.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 85 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007979-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kj5jvk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jurinea arachnoidea Bunge",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129309-240321170329656/datasets/export for details.
DOI: 10.15468/dl.3w3jy8
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia eduardoi L.C.Leach"
 ]
}

 The dataset includes 26 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046716-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pzffma
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Discocalyx silvestris Holthuis"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098592-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cd6t0b
title: Occurrence Download

description: A dataset containing 4804 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada"
 ]
 },
 "TaxonKey is Bombus ternarius Say, 1837"
 ]
}

 The dataset includes 4804 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007979-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pbbtrs
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erica stokoeanthus E.G.H.Oliv."
 ]
}

 The dataset includes 47 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046776-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.32mv9c
title: Occurrence Download

description: A dataset containing 2760 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Brucea javanica (L.) Merr."
 ]
}

 The dataset includes 2760 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001965-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3gjao
title: Occurrence Download

description: A dataset containing 318 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceratophrys cranwelli Barrio, 1980"
 ]
}

 The dataset includes 318 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007979-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ezep2
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eugenia rodriguesensis J.Guého & A.J.Scott"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046706-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.l5ivkt
title: Occurrence Download

description: A dataset containing 7044 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is South Africa",
 "Year 2000-2019",
 "HasCoordinate is true",
 "TaxonKey is Psittacula krameri (Scopoli, 1769)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7044 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007979-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xyb4jd
title: Occurrence Download

description: A dataset listing the 206 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((172.86635 -43.73829,172.9024 -43.73829,172.9024 -43.70619,172.86635 -43.70619,172.86635 -43.73829))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 206 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108107-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.epwjrw
title: Occurrence Download

description: A dataset containing 4691 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pagurus prideaux Leach, 1815"
 ]
}

 The dataset includes 4691 records from 140 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129311-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cdqkj3
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "Geometry POLYGON((-74.10561516058297 4.696913190028923,-74.10561516058297 4.68748644412625,-74.08083977079087 4.68748644412625,-74.08083977079087 4.696913190028923,-74.10561516058297 4.696913190028923))",
 "DatasetKey is one of (Fauna herpetológica de las Reservas Distritales de Humedal de Bogotá, D.C.)"
 ]
 }
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011023-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26977948
title: annotation_result

description: We applied a hybrid de novo assembly approach based on Illumina short-reads and Nanopore long-reads. Short– and long–reads were assembled to contigs using MaSuRCA v4.0.8. For gap-closing, assembled contigs were scaffolded into the draft genome using HaploMerger2 v20180603. The resultant draft haploid genomes had total lengths of 40.3–69.3 Mbp, scaffold numbers of 94–348, N50 of 0.35–1.09 Mbp, and the longest scaffold of length 2.1–4.6 Mbp, as calculated by QUAST v5.1.0rc1. We evaluated the gene completeness of our draft genome using BUSCO v5.3.0. BUSCO assessment showed that 90–98% (92.4 ± 2.3, average ± SD) of orthologs conserved in Stramenopiles were present in this genome assembly (sum of the percentages of single-copy and duplicate), suggesting that our draft genome possessed a sufficient gene repertoire from Stramenopiles. The organelle sequences were excluded from the assembly data, and repeat regions were masked to use the assembly data for the gene prediction. RNA–seqs were mapped to the assembled genome sequences using HISAT2 v2.2.1 with default settings, and gene prediction was made using Augustus v3.4.0 trained with the protein sequence data of <i>Thalassoisira pseudonana</i>, which is the closest species to <i>Skeletonema</i>, resulting in 15,275–21,376 protein–coding genes being annotated in the <i>Skeletonema</i> genomes.
DOI: 10.6084/m9.figshare.26977948.v1
title: annotation_result

description: We applied a hybrid de novo assembly approach based on Illumina short-reads and Nanopore long-reads. Short– and long–reads were assembled to contigs using MaSuRCA v4.0.8. For gap-closing, assembled contigs were scaffolded into the draft genome using HaploMerger2 v20180603. The resultant draft haploid genomes had total lengths of 40.3–69.3 Mbp, scaffold numbers of 94–348, N50 of 0.35–1.09 Mbp, and the longest scaffold of length 2.1–4.6 Mbp, as calculated by QUAST v5.1.0rc1. We evaluated the gene completeness of our draft genome using BUSCO v5.3.0. BUSCO assessment showed that 90–98% (92.4 ± 2.3, average ± SD) of orthologs conserved in Stramenopiles were present in this genome assembly (sum of the percentages of single-copy and duplicate), suggesting that our draft genome possessed a sufficient gene repertoire from Stramenopiles. The organelle sequences were excluded from the assembly data, and repeat regions were masked to use the assembly data for the gene prediction. RNA–seqs were mapped to the assembled genome sequences using HISAT2 v2.2.1 with default settings, and gene prediction was made using Augustus v3.4.0 trained with the protein sequence data of <i>Thalassoisira pseudonana</i>, which is the closest species to <i>Skeletonema</i>, resulting in 15,275–21,376 protein–coding genes being annotated in the <i>Skeletonema</i> genomes.
DOI: 10.15468/dl.p4atev
title: Occurrence Download

description: A dataset containing 343 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachycephalus pitanga Alves, Sawaya, Reis & Haddad, 2009"
 ]
}

 The dataset includes 343 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011024-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pdf3ra
title: Occurrence Download

description: A dataset containing 6940657 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Peru",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 6940657 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011012-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26978227
title: draft_genome_fasta

description: Eleven clonal strains of 9 <i>Skeletonema</i> species were established from a bloom in various regions in Japan, Vietnam, China, Taiwan, and Sweden by micropipetting single chains. Sequencing of DNA and RNA was performed using the Novaseq 6000 (Illumina, San Diego, CA, USA) or DNBSEQ-G400 (MGI Tech, Shenzhen, Guangdong, China), the next-generation sequencers. For genome sequencing, library construction of Pair End libraries (150PE) were performed by the default protocol and these libraries were used for sequencing. A total of 9.1–30.0 Gbp of sequences were obtained, which were approximately 131–644 x coverage of <i>Skeletonema</i> genomes (40.3–69.3 Mbp, see below). For long-read sequencing using MinION (Oxford Nanopore Technology, Oxford, UK), a total of 1.1–22.1 Gbp of long-read data were obtained, which were 20–445 x coverage of <i>Skeletonema</i> genomes.We applied a hybrid de novo assembly approach based on Illumina short-reads and Nanopore long-reads. Short– and long–reads were assembled to contigs using MaSuRCA v4.0.8. For gap-closing, assembled contigs were scaffolded into the draft genome using HaploMerger2 v20180603. The resultant draft haploid genomes had total lengths of 40.3–69.3 Mbp, scaffold numbers of 94–348, N50 of 0.35–1.09 Mbp, and the longest scaffold of length 2.1–4.6 Mbp, as calculated by QUAST v5.1.0rc1.
DOI: 10.6084/m9.figshare.26978227.v1
title: draft_genome_fasta

description: Eleven clonal strains of 9 <i>Skeletonema</i> species were established from a bloom in various regions in Japan, Vietnam, China, Taiwan, and Sweden by micropipetting single chains. Sequencing of DNA and RNA was performed using the Novaseq 6000 (Illumina, San Diego, CA, USA) or DNBSEQ-G400 (MGI Tech, Shenzhen, Guangdong, China), the next-generation sequencers. For genome sequencing, library construction of Pair End libraries (150PE) were performed by the default protocol and these libraries were used for sequencing. A total of 9.1–30.0 Gbp of sequences were obtained, which were approximately 131–644 x coverage of <i>Skeletonema</i> genomes (40.3–69.3 Mbp, see below). For long-read sequencing using MinION (Oxford Nanopore Technology, Oxford, UK), a total of 1.1–22.1 Gbp of long-read data were obtained, which were 20–445 x coverage of <i>Skeletonema</i> genomes.We applied a hybrid de novo assembly approach based on Illumina short-reads and Nanopore long-reads. Short– and long–reads were assembled to contigs using MaSuRCA v4.0.8. For gap-closing, assembled contigs were scaffolded into the draft genome using HaploMerger2 v20180603. The resultant draft haploid genomes had total lengths of 40.3–69.3 Mbp, scaffold numbers of 94–348, N50 of 0.35–1.09 Mbp, and the longest scaffold of length 2.1–4.6 Mbp, as calculated by QUAST v5.1.0rc1.
DOI: 10.6084/m9.figshare.26978401
title: protein_coding_genes_fasta

description: We applied a hybrid de novo assembly approach based on Illumina short-reads and Nanopore long-reads. Short– and long–reads were assembled to contigs using MaSuRCA v4.0.8. For gap-closing, assembled contigs were scaffolded into the draft genome using HaploMerger2 v20180603. The resultant draft haploid genomes had total lengths of 40.3–69.3 Mbp, scaffold numbers of 94–348, N50 of 0.35–1.09 Mbp, and the longest scaffold of length 2.1–4.6 Mbp, as calculated by QUAST v5.1.0rc1. We evaluated the gene completeness of our draft genome using BUSCO v5.3.0. BUSCO assessment showed that 90–98% (92.4 ± 2.3, average ± SD) of orthologs conserved in Stramenopiles were present in this genome assembly (sum of the percentages of single-copy and duplicate), suggesting that our draft genome possessed a sufficient gene repertoire from Stramenopiles. The organelle sequences were excluded from the assembly data, and repeat regions were masked to use the assembly data for the gene prediction. RNA–seqs were mapped to the assembled genome sequences using HISAT2 v2.2.1 with default settings, and gene prediction was made using Augustus v3.4.0 trained with the protein sequence data of <i>Thalassoisira pseudonana</i>, which is the closest species to <i>Skeletonema</i>, resulting in 15,275–21,376 protein–coding genes being annotated in the <i>Skeletonema</i> genomes.
DOI: 10.6084/m9.figshare.26978401.v1
title: protein_coding_genes_fasta

description: We applied a hybrid de novo assembly approach based on Illumina short-reads and Nanopore long-reads. Short– and long–reads were assembled to contigs using MaSuRCA v4.0.8. For gap-closing, assembled contigs were scaffolded into the draft genome using HaploMerger2 v20180603. The resultant draft haploid genomes had total lengths of 40.3–69.3 Mbp, scaffold numbers of 94–348, N50 of 0.35–1.09 Mbp, and the longest scaffold of length 2.1–4.6 Mbp, as calculated by QUAST v5.1.0rc1. We evaluated the gene completeness of our draft genome using BUSCO v5.3.0. BUSCO assessment showed that 90–98% (92.4 ± 2.3, average ± SD) of orthologs conserved in Stramenopiles were present in this genome assembly (sum of the percentages of single-copy and duplicate), suggesting that our draft genome possessed a sufficient gene repertoire from Stramenopiles. The organelle sequences were excluded from the assembly data, and repeat regions were masked to use the assembly data for the gene prediction. RNA–seqs were mapped to the assembled genome sequences using HISAT2 v2.2.1 with default settings, and gene prediction was made using Augustus v3.4.0 trained with the protein sequence data of <i>Thalassoisira pseudonana</i>, which is the closest species to <i>Skeletonema</i>, resulting in 15,275–21,376 protein–coding genes being annotated in the <i>Skeletonema</i> genomes.
DOI: 10.6084/m9.figshare.26978386
title: protein_coding_amino_acids_fasta

description: We applied a hybrid de novo assembly approach based on Illumina short-reads and Nanopore long-reads. Short– and long–reads were assembled to contigs using MaSuRCA v4.0.8. For gap-closing, assembled contigs were scaffolded into the draft genome using HaploMerger2 v20180603. The resultant draft haploid genomes had total lengths of 40.3–69.3 Mbp, scaffold numbers of 94–348, N50 of 0.35–1.09 Mbp, and the longest scaffold of length 2.1–4.6 Mbp, as calculated by QUAST v5.1.0rc1. We evaluated the gene completeness of our draft genome using BUSCO v5.3.0. BUSCO assessment showed that 90–98% (92.4 ± 2.3, average ± SD) of orthologs conserved in Stramenopiles were present in this genome assembly (sum of the percentages of single-copy and duplicate), suggesting that our draft genome possessed a sufficient gene repertoire from Stramenopiles. The organelle sequences were excluded from the assembly data, and repeat regions were masked to use the assembly data for the gene prediction. RNA–seqs were mapped to the assembled genome sequences using HISAT2 v2.2.1 with default settings, and gene prediction was made using Augustus v3.4.0 trained with the protein sequence data of <i>Thalassoisira pseudonana</i>, which is the closest species to <i>Skeletonema</i>, resulting in 15,275–21,376 protein–coding genes being annotated in the <i>Skeletonema</i> genomes.
DOI: 10.6084/m9.figshare.26978386.v1
title: protein_coding_amino_acids_fasta

description: We applied a hybrid de novo assembly approach based on Illumina short-reads and Nanopore long-reads. Short– and long–reads were assembled to contigs using MaSuRCA v4.0.8. For gap-closing, assembled contigs were scaffolded into the draft genome using HaploMerger2 v20180603. The resultant draft haploid genomes had total lengths of 40.3–69.3 Mbp, scaffold numbers of 94–348, N50 of 0.35–1.09 Mbp, and the longest scaffold of length 2.1–4.6 Mbp, as calculated by QUAST v5.1.0rc1. We evaluated the gene completeness of our draft genome using BUSCO v5.3.0. BUSCO assessment showed that 90–98% (92.4 ± 2.3, average ± SD) of orthologs conserved in Stramenopiles were present in this genome assembly (sum of the percentages of single-copy and duplicate), suggesting that our draft genome possessed a sufficient gene repertoire from Stramenopiles. The organelle sequences were excluded from the assembly data, and repeat regions were masked to use the assembly data for the gene prediction. RNA–seqs were mapped to the assembled genome sequences using HISAT2 v2.2.1 with default settings, and gene prediction was made using Augustus v3.4.0 trained with the protein sequence data of <i>Thalassoisira pseudonana</i>, which is the closest species to <i>Skeletonema</i>, resulting in 15,275–21,376 protein–coding genes being annotated in the <i>Skeletonema</i> genomes.
DOI: 10.15468/dl.yzsex2
title: Occurrence Download

description: A dataset containing 426130 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Limonium sinuatum (L.) Mill., Limonium sinuatum subsp. sinuatum, Linaria vulgaris Mill.)"
 ]
}

 The dataset includes 426130 records from 2131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011013-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nnski3
title: Occurrence Download

description: A dataset containing 135511 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ebenaceae"
 ]
}

 The dataset includes 135511 records from 736 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002429-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yby6bq
title: Occurrence Download

description: A dataset containing 1231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-139.25934 20.10051,-89.74066 20.10051,-89.74066 39.89949,-139.25934 39.89949,-139.25934 20.10051))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anaxyrus californicus (Camp, 1915)"
 ]
}

 The dataset includes 1231 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042738-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mvjdlo
title: Occurrence Download

description: A dataset containing 257692 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fagus sylvatica L."
 ]
}

 The dataset includes 257692 records from 638 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003517-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7tqzkm
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Burkina Faso",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bombax costatum Pellegr. & Vuillet",
 "Year is greater than or equal to 2001"
 ]
}

 The dataset includes 49 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078371-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qjhnjk
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Mamíferos de la Ecoreserva Apiay (Villavicencio, Meta) - Proyecto Ecoreservas"
 ]
}

 The dataset includes 110 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042742-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.