cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21776258.v1
title: A Pan-Cancer Analysis of the Role of small ArfGAP 1 in Human Tumors

description: This table shows the raw data in the study. <br> Supplementary Table 1: The expression data of SMAP1 gene in 34 tumors. Supplementary Table 2: Pan-cancer data and analysis results of the relationship between SMAP1 gene expression and prognosis. Supplementary Table 3: The SMAP1 clinical phenotype expression data in 37 cancer species. Supplementary Table 4-7: The results of correlation analysis between SMAP1 expression and clinical phenotype in various cancers. Supplementary Table 8: The expression data of SMAP1 genomic heterogeneity. Supplementary Table 9: The expression data of SMAP1 tumor stemness. Supplementary Table 10: Pan-cancer data and analysis results of the relationship between SMAP1 gene expression and tumor microenvironment.
DOI: 10.25345/c5pz51x37
title: MassIVE MSV000092772 - Fraction reactivity dataset for doi.org/10.1021/acs.est.3c02175
title: MS1 data from size exclusion chromatography for a study on DOM reactivity after fractionation by C18. Samples from three lakes were fractionated, and fractions were incubated with native bacteria before solid phase extraction and analysis by LC-MS. Full article here: doi.org/10.1021/acs.est.3c02175
DOI: 10.6084/m9.figshare.24043134
title: 23-08-26 Raw data for 4 taxa of melanopsids - distance travelled by shell - rod - magnet assembly

description: The aperture of the shell was sealed with a thin film of general-purpose waterproof glue and the shell was then attached by a hot-glue gun to the end of a fibre-glass rod (2 mm diameter) with the main whorl pointing upstream (‘head-upstream’). The resistance to water flow offered by the shell caused this assembly of shell, rod and magnet to be pushed towards a larger fixed magnet which resisted the deflection of the rod assembly. The shell was held in a tube 0.03m internal diameter and 30mm from the point at which the tube discharged into a test chamber. We focussed on empty shells to avoid the influence of biological behaviour, and we did not attempt to position the shell close to a surface. the shell assembly was in place, the gate valve was opened in steps. At each step, a measurement was made when the shell had stopped moving and was in a stable position. The water velocity was calculated by measuring the volume of the discharge from the pipe over a known period. All results were analysed after subtracting the response of the rod alone. For each shell measured in flowing water in the apparatus, a mean deflection from three replicated readings was obtained. When flow rates were reduced, the assembly moved firmly back to its original position; there was no indication that there was an issue of friction of the rod in its holding tube.
DOI: 10.6084/m9.figshare.24043212
title: 20230829_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.24043212.v1
title: 20230829_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.24043191.v1
title: 23-02-15 Calibration of water velocity through the apparatus by measuring discharge per unit time

description: Water discharge through the apparatus was controlled by a gate valve which was opened in a series of steps. The volume of water discharging into a container over a unit time was measured. From this, velocities could be calculated. Velocity was also measured by passing a small piece of paper suspended in the water through the apparatus and measuring its speed in m/s at each step in the opening of the gate valve. Results from the two methods were similar.
DOI: 10.6084/m9.figshare.24043191
title: 23-02-15 Calibration of water velocity through the apparatus by measuring discharge per unit time

description: Water discharge through the apparatus was controlled by a gate valve which was opened in a series of steps. The volume of water discharging into a container over a unit time was measured. From this, velocities could be calculated. Velocity was also measured by passing a small piece of paper suspended in the water through the apparatus and measuring its speed in m/s at each step in the opening of the gate valve. Results from the two methods were similar.
DOI: 10.4121/fb37e29c-b94b-4888-b3c8-db889bf211e2
title: Data underlying the publication "An Efficient Triplex TaqMan Quantitative PCR to Detect a Blackleg-Causing Lineage of Pectobacterium brasiliense in Potato Based on a Pangenome Analysis”

description: Data set to reconstruct the Pectobacterium brasiliense pangenome described in van der Lee, et al. (2023) "An efficient triplex TaqMan quantitative PCR to detect a blackleg-causing lineage of <em>Pectobacterium brasiliense</em> in potato based on a pangenome analysis".<strong> </strong>The data set contains the input data (genomes, annotations, functions, phenotypes) to reconstruct the pangenome, the conda yml file to set up the environment to perform the pangenome analysis, and the data needed to create a BLAST database from all data in the pangenome.
DOI: 10.4121/fb37e29c-b94b-4888-b3c8-db889bf211e2.v1
title: Data underlying the publication "An Efficient Triplex TaqMan Quantitative PCR to Detect a Blackleg-Causing Lineage of Pectobacterium brasiliense in Potato Based on a Pangenome Analysis”

description: Data set to reconstruct the Pectobacterium brasiliense pangenome described in van der Lee, et al. (2023) "An efficient triplex TaqMan quantitative PCR to detect a blackleg-causing lineage of <em>Pectobacterium brasiliense</em> in potato based on a pangenome analysis".<strong> </strong>The data set contains the input data (genomes, annotations, functions, phenotypes) to reconstruct the pangenome, the conda yml file to set up the environment to perform the pangenome analysis, and the data needed to create a BLAST database from all data in the pangenome.
DOI: 10.5281/zenodo.8289904
title: Designing a Synthetic Microbial Community through Genome Metabolic Modeling to enhance Plant-Microbe Interaction

description: Supplementary data 1 - <strong>Reconstructed genome-scale metabolic networks from MAGs and Hosts</strong> Supplementary data 2 - P<strong>lant growth-promoting traits among members of the minimal community</strong> Manipulating the rhizosphere microbial community through beneficial microorganism inoculation has gained interest in improving crop productivity and stress resistance. Synthetic microbial communities, known as SynCom, mimic natural microbial compositions while reducing the number of components. However, achieving this goal requires a comprehensive understanding of natural microbial communities and a careful selection of compatible microorganisms with colonization traits, which still pose challenges. In this study, we employed an <em>in-silico</em> approach using genome metabolic modeling to design a synthetic microbial community aimed at improving the yield of important crop plants. We used a targeted approach to select a minimal community (MinCom) encompassing essential compounds for microbial metabolism and compounds relevant to plant interactions. This resulted in a reduction of the initial community size by approximately 4.5-fold. Notably, the MinCom retained crucial genes associated with essential plant growth-promoting traits, such as iron acquisition, EPS production, potassium solubilization, nitrogen fixation, GABA production, and IAA-related tryptophan metabolism. Furthermore, our selection process for the SymCom, based on a comprehensive understanding of microbe-microbe-plant interactions, yielded a set of six hub species that displayed notable taxonomic novelty, including members of the Eremiobacterota and Verrucomicrobiota phyla. Our study contributes to the growing body of research on synthetic microbial communities and their potential to enhance agricultural practices. The insights gained from our in-silico approach and the selection of hub species pave the way for further investigations into the development of tailored microbial communities that can optimize crop productivity and improve stress resilience in agricultural systems.
DOI: 10.5281/zenodo.8289903
title: Designing a Synthetic Microbial Community through Genome Metabolic Modeling to enhance Plant-Microbe Interaction

description: Supplementary data 1 - <strong>Reconstructed genome-scale metabolic networks from MAGs and Hosts</strong> Supplementary data 2 - P<strong>lant growth-promoting traits among members of the minimal community</strong> Manipulating the rhizosphere microbial community through beneficial microorganism inoculation has gained interest in improving crop productivity and stress resistance. Synthetic microbial communities, known as SynCom, mimic natural microbial compositions while reducing the number of components. However, achieving this goal requires a comprehensive understanding of natural microbial communities and a careful selection of compatible microorganisms with colonization traits, which still pose challenges. In this study, we employed an <em>in-silico</em> approach using genome metabolic modeling to design a synthetic microbial community aimed at improving the yield of important crop plants. We used a targeted approach to select a minimal community (MinCom) encompassing essential compounds for microbial metabolism and compounds relevant to plant interactions. This resulted in a reduction of the initial community size by approximately 4.5-fold. Notably, the MinCom retained crucial genes associated with essential plant growth-promoting traits, such as iron acquisition, EPS production, potassium solubilization, nitrogen fixation, GABA production, and IAA-related tryptophan metabolism. Furthermore, our selection process for the SymCom, based on a comprehensive understanding of microbe-microbe-plant interactions, yielded a set of six hub species that displayed notable taxonomic novelty, including members of the Eremiobacterota and Verrucomicrobiota phyla. Our study contributes to the growing body of research on synthetic microbial communities and their potential to enhance agricultural practices. The insights gained from our in-silico approach and the selection of hub species pave the way for further investigations into the development of tailored microbial communities that can optimize crop productivity and improve stress resilience in agricultural systems.
DOI: 10.5517/cc79t1c
title: CCDC 217962: Experimental Crystal Structure Determination

description: Related Article: M.B.Hursthouse, S.J.Coles, A.Pelter|2003|CSD Communication|||
description: Related Article: Andy Pelter, Simon J. Coles, Michael B. Hursthouse|2001|University of Southampton, Crystal Structure Report Archive||779|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5258/ecrystals/228
title: 2,2-Dipenyl-4,6-cis-oxy(tetraethyleneoxy)-4,6-dimethoxycyclotriphosphazatriene
DOI: 10.5258/ecrystals/80
title: 1-Amino-2-methyl-4-(triphenylphosphonio)anthraquinone bromide
DOI: 10.5258/ecrystals/898
title: 02SRC123
DOI: 10.15468/yv8g62
title: Institute of Marine Affairs Species Checklist

description: The Institute of Marine Affairs Species Checklist data is derived from a collection of scientific manuscripts housed at the Institute. The manuscripts examined species distributions across Trinidad & Tobago's Exclusive Economic Zone during the years 1977-2002. The manuscripts were subsequently published by the Institute between 1978-2006.
DOI: 10.5281/zenodo.8208004
title: Data for the paper Prey consumption does not restore hydration state but mitigates the energetic costs of water deprivation in an insectivorous lizard

description: Morphological and physiological data for the paper untitled "Prey consumption does not restore hydration state but mitigates the energetic costs of water deprivation in an insectivorous lizard" published in Journal of Experimental Biology in 2023 Additionnal data on statistical analysis and model summary
DOI: 10.5281/zenodo.8208003
title: Data for the paper Prey consumption does not restore hydration state but mitigates the energetic costs of water deprivation in an insectivorous lizard

description: Morphological and physiological data for the paper untitled "Prey consumption does not restore hydration state but mitigates the energetic costs of water deprivation in an insectivorous lizard" published in Journal of Experimental Biology in 2023 Additionnal data on statistical analysis and model summary
DOI: 10.5281/zenodo.8289874
title: CDSet: Crosswalk DataSet for Zebra Crossing Detection

description: This dataset is a collection of crosswalk (zebra crossing) images collected on vehicle-mounted cameras, used to study advanced neural network algorithms for crosswalk detection and analysis of car crossing behavior. The dataset contains 3434 images, including real scenes such as daytime, rainy days, occlusion, deformation, truncation, night, damaged, dazzling, etc. The targets includes two categories: crosswalk and guide arrows. The dataset is divided into 3080 training sets and 354 test sets. In addition, this dataset also provides additional 1770 images labeled with or without crosswalk for testing. The correspoding paper is CDNet: a real-time and robust crosstalk detection network on Jetson nano based on YOLOv5, which can be found in doi: 10.1007/s00521-022-07007-9 (Read Paper). The benchmark model is based on the previous SOTA model YOLOv5 and has undergone multiple improvements such as ROI, SE, NST, SSVM, Synthetic Fog, etc. The open source code can be found on Github-CDNet.
DOI: 10.5281/zenodo.8289873
title: CDSet: Crosswalk DataSet for Zebra Crossing Detection

description: This dataset is a collection of crosswalk (zebra crossing) images collected on vehicle-mounted cameras, used to study advanced neural network algorithms for crosswalk detection and analysis of car crossing behavior. The dataset contains 3434 images, including real scenes such as daytime, rainy days, occlusion, deformation, truncation, night, damaged, dazzling, etc. The targets includes two categories: crosswalk and guide arrows. The dataset is divided into 3080 training sets and 354 test sets. In addition, this dataset also provides additional 1770 images labeled with or without crosswalk for testing. The correspoding paper is CDNet: a real-time and robust crosstalk detection network on Jetson nano based on YOLOv5, which can be found in doi: 10.1007/s00521-022-07007-9 (Read Paper). The benchmark model is based on the previous SOTA model YOLOv5 and has undergone multiple improvements such as ROI, SE, NST, SSVM, Synthetic Fog, etc. The open source code can be found on Github-CDNet.
DOI: 10.15468/dl.4kheqc
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Agathomyia viduella (Zetterstedt, 1838)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 102 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086327-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9g6eq9
title: Occurrence Download

description: A dataset containing 1314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Utricularia L."
 ]
}

 The dataset includes 1314 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086328-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76k2k7
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Sitophilus granarius (C.Linnaeus, 1758)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 240 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086330-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zra6a2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abronia frosti Campbell, Sasa, Acevedo & Mendelson, 1998)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086331-240626123714530/datasets/export for details.
DOI: 10.15468/dl.th95r7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Huerteales)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Geometry POLYGON((-30 25,50 25,50 75,-30 75,-30 25))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086332-240626123714530/datasets/export for details.
DOI: 10.15468/dl.qtcpw2
title: Occurrence Download

description: A dataset containing 310 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Agathomyia unicolor Oldenberg, 1928",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 310 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086333-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3kncpx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Myotis yanbarensis Maeda & Matsumura, 1998)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086335-240626123714530/datasets/export for details.
DOI: 10.15468/dl.4zgzay
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Sitophilus granarius (C.Linnaeus, 1758)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 240 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086334-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tacbpr
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Agathomyia antennata (Zetterstedt, 1819)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 207 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086337-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfsc6q
title: Occurrence Download

description: A dataset containing 1701032 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Asia, Europe, North America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EX, EW, CR, EN, VU, NT, LC, DD, NE)",
 "OccurrenceStatus is Present",
 "TaxonKey is Bivalvia",
 "Year 1980-2024"
 ]
}

 The dataset includes 1701032 records from 1595 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085865-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.5901769
title: 35S:GFP Background Images

description: Images of roots expressing 35S:GFP with a background region included to calculate the S-factor for Number and Brightness analysis.
DOI: 10.6084/m9.figshare.5901769.v1
title: 35S:GFP Background Images

description: Images of roots expressing 35S:GFP with a background region included to calculate the S-factor for Number and Brightness analysis.
DOI: 10.6084/m9.figshare.5901754
title: Data for altmetric global north project

description: This results data outlines the results associated with a altmetrics data analysis project that evaluated language and global north bias. <br><br>It contains both the numbered results as well as some visualisations. <br>
DOI: 10.6084/m9.figshare.5901754.v1
title: Data for altmetric global north project

description: This results data outlines the results associated with a altmetrics data analysis project that evaluated language and global north bias. <br><br>It contains both the numbered results as well as some visualisations. <br>