cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.20350/digitalcsic/15452
title: Crustacean Anesthetics [Dataset]

description: Methods to induce analgesia and anesthesia have been used in 71 crustaceans for research pur-poses, handling, transport or stunning. A non-systematic literature search was carried out crus-tacean anesthetic methods. We prepared this on-line tool based on datasette (https://datasette.io/), a no-code open source solution for simple web-based database frontends that allows exploring and publishing data by method, analgesic/anesthetic, species, life stage or sex., as well as other data including environmental conditions (temperature, salinity, light), way of administration, dosage, and induction and recovery times. Use of this tool for selecting anesthetics in crustaceans is free but we ask that you please cite the following publication that explains the tool in any published outputs: Rotllant, G.; Llonch, P.; Garc??a del Arco, J.A.; Chic, ??.; Flecknell, P.; Sneddon, L.U. Methods to Induce Analgesia and Anesthesia in Crustaceans: A Supportive Decision Tool. Biology 2023, 12, 387. https://doi.org/10.3390/biology12030387
DOI: 10.20350/digitalcsic/15441
title: Oceanographic variables dataset: northeast continental shelf of the Gulf of C??diz

description: The dataset contains measurements of Chlorophyll-a (mg m-3), nitrate (??M) and suspended matter (???SM???, g m-3) concentrations, temperature (??C) and mesozooplankton biovolume (mL 100m-3), collected between 2002 and 2007, in a network of sampling stations (???Station_ID???) distributed across the northeast continental shelf of the Gulf of C??diz. The year and Julian day (number of days after 1 January) in which each sample was obtained are indicated, as well as their geolocation with latitude and longitude coordinates in degrees. Chlorophyll-a, suspended matter (SM), nitrate and temperature data were taken from the surface layer (&lt;5m) of the water column. Oblique plankton hauls were conducted up to 100 meters using a Bongo net with a 40-cm mouth diameter and 200 mm mesh size, for mesozooplankton sampling.
description: [General Notes] The dataset is provided (???Dataset.txt???) within a compressed folder that also includes a single file in text format (???Readme.txt???) containing a detailed description of the data structure. Dataset.txt file has column titles as the first line. One column is written for each measured variable. Missing data are filled with NaN. Data files are in UTF8 encoding, plain text format with [space] used as the delimiter. The data are provided under an Attribution-ShareAlike 4.0 International license. However, if you use the data, so as to support the authors, please consider citing the above mentioned article where data collection and analytical techniques are given in detail. Here we only give a brief details and a guide to the contents of the data files.
description: [Geographical coordinates of the sampling area] Coordinates.txt file provides the geographical coordinates of the sampling area.
description: This data set includes physical and biogeochemical data collected between 2002 and 2007 on the northeast continental shelf of the Gulf of C??diz.
DOI: 10.20350/digitalcsic/15339
title: Supplementary Materials for Input-dependent segregation of visual and somatosensory circuits in the mouse superior colliculus

description: Materials and Methods: Figs. S1 to S11 Movies S1 to S13 Tables S1 and S2
DOI: 10.20350/digitalcsic/15443
title: Table_2_Evolutionary Dynamics of the Repeatome Explains Contrasting Differences in Genome Sizes and Hybrid and Polyploid Origins of Grass Loliinae Lineages.DOCX

description: Loliinae samples used in the repetitive DNA analysis. Genome skimming paired-end (PE) reads per sample and PE reads selected by Repeat Explorer 2 per sample in each of the comparative analyses of the four Loliinae groups: Loliinae, BL (broad-leaved Loliinae), FL (fine-leaved Loliinae), Schedonorus.
description: The repeatome is composed of diverse families of repetitive DNA that keep signatures on the historical events that shaped the evolution of their hosting species. The cold seasonal Loliinae subtribe includes worldwide distributed taxa, some of which are the most important forage and lawn species (fescues and ray-grasses). The Loliinae are prone to hybridization and polyploidization. It has been observed a striking two-fold difference in genome size between the broad-leaved (BL) and fine-leaved (FL) Loliinae diploids and a general trend of genome reduction of some high polyploids. We have used genome skimming data to uncover the composition, abundance, and potential phylogenetic signal of repetitive elements across 47 representatives of the main Loliinae lineages. Independent and comparative analyses of repetitive sequences and of 5S rDNA loci were performed for all taxa under study and for four evolutionary Loliinae groups [Loliinae, Broad-leaved (BL), Fine-leaved (FL), and Schedonorus lineages]. Our data showed that the proportion of the genome covered by the repeatome in the Loliinae species was relatively high (average ??? 51.8%), ranging from high percentages in some diploids (68.7%) to low percentages in some high-polyploids (30.7%), and that changes in their genome sizes were likely caused by gains or losses in their repeat elements. Ty3-gypsy Retand and Ty1-copia Angela retrotransposons were the most frequent repeat families in the Loliinae although the relatively more conservative Angela repeats presented the highest correlation of repeat content with genome size variation and the highest phylogenetic signal of the whole repeatome. By contrast, Athila retrotransposons presented evidence of recent proliferations almost exclusively in the Lolium clade. The repeatome evolutionary networks showed an overall topological congruence with the nuclear 35S rDNA phylogeny and a geographic-based structure for some lineages. The evolution of the Loliinae repeatome suggests a plausible scenario of recurrent allopolyploidizations followed by diploidizations that generated the large genome sizes of BL diploids as well as large genomic rearrangements in highly hybridogenous lineages that caused massive repeatome and genome contractions in the Schedonorus and Aulaxyper polyploids. Our study has contributed to disentangling the impact of the repeatome dynamics on the genome diversification and evolution of the Loliinae grasses.
DOI: 10.20350/digitalcsic/14754
title: Does the temperature-size rule apply to marine protozoans after proper acclimation? [Dataset]

description: The temperature-size rule hypothesized that there is a negative relationship between the size (volume) of an organism and the temperature. This applies to both unicellular and pluricellular organisms. Here, we question this hypothesis for the particular case of protozoans, because in these organisms the volume is directly related to the consumption of prey, and on most of the occasions the true volume of the cell is unknown. To prove our arguments, we designed a series of experiments with the heterotrophic dinoflagellate O. marina, including functional and numerical responses, time-dependent acclimation responses, and estimation of the protozoan volume during long periods of starvation. Our data showed that, in fact, the observed temperature-size rule in unicellular grazers results from anabolic and catabolic imbalances, and that the relationship between size and temperature weakens after proper thermal adaptation. We also showed that once prey are fully digested, the protozoan??? size is the same irrespectively of the temperature. Finally, we set the basis for proper acclimation during short-term temperature experiments, which specifies that at least 3 days should be allowed for proper temperature acclimation. We also suggest that, for trustable experiments, the grazer should be incubated at the target prey concentration for at least 24h before conducting the experiments. The ecological implications of a lack of correlation between microzooplankton size and temperature are also discussed
description: Para Oxyrrhis marina: Tasas de ingestion a diferentes concentraciones de alimento (presa/ind/d), Tasa crecimiento (?? 1/d), Volumen (??m3); para la presa (Rhodomonas salina): volume (??m3)
DOI: 10.20350/digitalcsic/15437
title: Supplementary Information: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation

description: S1 Text. Figs A-N and Tables A-G. The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the case of the spike A222V mutation. S1 Movie. Structural changes from S:D614G to [S:A222V + S:D614G], starting from cryo-EM maps, in two different orientations. The subtle rearrangement of the RBDs and NTDs of subunits A and B of the spike is specifically highlighted. Position of residue 222 in each subunit is represented as a cyan sphere. S1 Table. Full Table of frequencies of sequences with A222V for the different PANGO lineages.
DOI: 10.20350/digitalcsic/15429
title: Supplemental Material for A contribution to Cerataphis molecular taxonomy and ecology: the Costa Rican case

description: Index of supplemental materials: Table S1. Species information and accession number for sequences retrieved from public databases included in phylogenetic analysis. Table S2. Uricase (urate oxidase) partial sequences for YLS obtained from C. brasiliensis and C. orchidearum, and four Fulgoroidea species samples in Costa Rica. Table S3. Ant species associated with colonies of Cerataphis spp. and plant host combinations observed in Costa Rica and/or reported worldwide.
DOI: 10.20350/digitalcsic/15499
title: Inkjet???Printed and Nanopatterned Photonic Phosphor Motifs with Strongly Polarized and Directional Light???Emission [Dataset]

description: Herein a versatile and scalable method to prepare periodically corrugated nanophosphor surface patterns displaying strongly polarized and directional visible light emission is demonstrated. A combination of inkjet printing and soft lithography techniques is employed to obtain arbitrarily shaped light emitting motifs. Such predesigned luminescent drawings, in which the polarization and angular properties of the emitted light are determined and finely tuned through the surface relief, can be used as anti-counterfeiting labels, as these two specific optical features provide additional means to identify any unauthorized or forged copy of the protected item. The potential of this approach is exemplified by processing a self-standing photoluminescent quick response (QR) code whose emission is both polarized and directionally beamed. Physical insight of the mechanism behind the directional out-coupled photoluminescence observed is provided by finitedifference time-domain calculations.
DOI: 10.20350/digitalcsic/15405
title: Supplementary Materials Peptides against Low Density Lipoprotein (LDL) Aggregation Inhibit Intracellular Cholesteryl Ester Loading and Proliferation of Pancreatic Tumor Cells

description: Figure S1: Effect of peptides DP3 and IP321 on the intracellular CE/FC ratio induced by nLDLs and AgLDLs in RWP-1 and Capan-1 cells, Figure S2: Time-course effects of nLDLs and AgLDLs on intracellular CE/FC ratio in PANC-1 cells, Figure S3: Optical microscopy of PANC-1 cells exposed to nLDL, and AgLDL ?? DP3/IP321 peptides, Figure S4: Flow Cytometric analysis of cell proliferation and viability of PANC-1 cell cultures stained with PI, Figure S5: Uncropped blot for main Figure 1, Figure S6: Uncropped blots for main Figure 2, Figure S7: Uncropped blot for main Figure 4B, Figure S8: Uncropped blot for main Figure 5A, Figure S9: Uncropped blots for Figure S1, Figure S10: Uncropped blots for Figure S2, Figure S11: Flow cytometry dot plots for Figure 6C and Figure S4, Table S1: Raw data for Figure 4A, File S1: Flow Cytometry Analysis, raw data PANC-1 cell concentration (counts/mL) shown in Figure 6C, Figures S4 and S11.
DOI: 10.20350/digitalcsic/15333
title: Supplementary files of the article "Expert-independent classification of mature B-cell neoplasms using standardized flow cytometry: a multicentric study" [Dataset]

description: Supplemental Table 1. Detailed biological and demographic features of patients. Supplemental Table 2: Composition of the EuroFlow B-CLPD panel Supplemental Table 3. Overview on the data analysis strategy within the scope of the main study Supplemental Table 4. Canonical coefficients for CA1 and CA2. Significance of contribution of individual parameters to the canonical axes CA1 and CA2 by differential diagnosis. V Supplemental Table 5. SD lines utilized as decision criterion per pair-wise differential diagnosis Supplemental Table 6. Medians (10th ??? 90th 309 percentile) of medFIs and of BT ratio, 3respectively, by parameter and entity (see Figure 3 for corresponding box plots) Supplemental Table 7. Monte Carlo cross-validation results Supplemental Table 8. Cases rejected prior to study inclusion Supplemental Table 9: Markers representing predominantly background signal (BS) by entity
DOI: 10.20350/digitalcsic/15335
title: Supplementary Material for Comprehensive expression analysis for the core cell cycle regulators in the chicken embryo reveals novel tissue-specific synexpression groups and similarities and differences with expression in mouse, frog and zebrafish

description: Supplementary Material 1. Probes used for whole mount in situ hybridisation (ISH). Sequences for synthesized ISH probes.
DOI: 10.20350/digitalcsic/15320
title: SSR-based molecular profiles of 174 grapevine (Vitis vinifera L.) genotypes used to study the genetic diversity and structure in a Spanish Grape Germplasm collection [Dataset]
title: Perfiles moleculares basados en SSR de 174 accesiones de vid (Vitis vinifera L.) utilizadas para estudiar la diversidad gen??tica y la estructura poblacional en una colecci??n espa??ola de germoplasma de vid [Dataset]

description: Contains 2 files, 1 .xls ; 1 .pdf : Allele sizes in base pairs obtained from 26 microsatellites analyzed in the 174 Vitis vinifera L. genotypes studied (three columns with the identification as Genotype number, Genotype code and population), and 52 columns with two allele sizes from 26 SSRs. Under a Creative Commons License Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0).
description: [EN] This dataset includes the SSR-based molecular profiles of 174 grapevine (Vitis vinifera L.) genotypes used to study the genetic diversity and structure in a Spanish Grape Germplasm collection. These profiles derived of the study carried out with 26 SSR markers to characterize 411 accessions preserved at the Aragon grapevine Germplasm Bank Collection in (BGVA). From the 156 non-duplicate accessions curated at the Aragon Germplasm Bank, we kept 113 representative genotypes (47 Spanish known, 51 Spanish unknowns, and 15 from European-oriental origin), and we added 61 representative genotypes curated at the El Encin Germplasm Bank to stablish a comparative study. The dataset was mainly generated within the project RF2012-00027-C05-02 Project ("Documentation, characterization, and rationalization of grapevine germplasm prospected and conserved in Spain. Creation of a nuclear collection").
description: [ES] Esta base de datos incluye los perfiles moleculares obtenidos con marcadores microsat??lites (SSR) en 174 genotipos de vid (Vitis vinifera L.) utilizados para determinar la diversidad gen??tica y estructura poblacional de una colecci??n espa??ola de germoplasma. Estos perfiles derivan de 26 SSRs utilizados para caracterizar 411 accesiones conservadas en el Banco de germoplasma de vid de Arag??n (BGVA). De las 156 accesiones no-duplicadas mantenidas en el BGVA, se eligieron 113 genotipos representativos (47 espa??oles conocidos, 51 espa??oles no conocidos, y 15 de diverso origen europeo u oriental), y se a??adieron otros 61 genotipos representativos mantenidos en el Banco de Germoplasma de El Encin con el fin de establecer un estudio comparativo. Los datos se generaron mayormente en el marco del proyecto RF2012-00027-C05-02 ("Documentaci??n, caracterizaci??n, y racionalizaci??n del germoplasma de vid prospectado y conservado en Espa??a. Creaci??n de una colecci??n nuclear").
DOI: 10.20350/digitalcsic/15323
title: Pressurized green liquid extraction of betalains and phenolic compounds from Opuntia stricta var. Dillenii whole fruit: Process optimization and biological activities of green extracts. Table S2.

description: Table S2. HPLC retention time (Rt), maximum absorption (??max) and m/z of the identified major bioactive compounds from Opuntia stricta var. Dillenii according to G??mez-L??pez et al. (2021a).
DOI: 10.20350/digitalcsic/15326
title: CiberAMP | An R package to identify differential mRNA expression linked to somatic copy number variations in cancer datasets [Dataset]

description: CiberAMP is an R package that uses differential expression analyses to stablish accurate correlations between specific SCNVs and changes in expression in the genes affected by them. The algorithm has been designed to be an easy-to-access tool for the TCGA, the largest database in the world with genomic and transcriptomic data ofr more than 10,000 samples of 33 different human cancers. Unlike other methods, CiberAMP can yield information on: (i) SCNV-DEGs (somatic copy number variations associated differentially expressed genes) in a cohort of TCGA tumor samples (ii) The type of copy number variation associated with each SCNV-DEG in terms of expression pattern and genomic context (iii) Insights on the potential functional relevance of each identified SCNV-DEG
DOI: 10.15468/dl.x6qsaj
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chioglossa lusitanica Bocage, 1864",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 106 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036472-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.euweqj
title: Occurrence Download

description: A dataset containing 12820881 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-77.47233 38.69485, -76.81628 38.69485, -76.81628 39.21974, -77.47233 39.21974, -77.47233 38.69485))",
 "Year is greater than or equal to 2010",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 12820881 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036376-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27142647
title: Raw Data

description: This research aims to investigate the factors influencing land rental rates and selling prices. It also intends to develop a forecast model and predictors of land yield. Based on variables influencing the rent and property prices along the indicated road within a 500-meter radius, we collected data on 100 parcels of land. It was announced that the land lots would be available for sale or rental in January through March of 2024. The aforementioned factors include the following: the width of the land parcel; the width of the road; the surface of the road; the distance from the major road; the distance from the MRT station; the distance from the community; the distance from retail centres, and the distance from convenience stores. The remaining samples, which consisted of 88 plots after the outliers were subtracted, were used to formulate a forecast model, which was then grounded and examined using multiple regression analysis. The study's findings revealed that, at a significant level of 0.05, the distance from the MRT station is a predictor of the yield rate of land for rent along Nakhon-In Road, explaining its influence. This distance was found to be 5.60%. Log (yield rate of land d per year) = -0.370 + 0.217 Log (distance from the MRT station) is the regression equation that can be created using the Log – Log format, which is the best forecast model for land yield rate.
DOI: 10.15468/dl.6regpc
title: Occurrence Download

description: A dataset containing 10029 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triturus marmoratus (Latreille, 1800)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 10029 records from 290 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036474-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.grecuz
title: Occurrence Download

description: A dataset containing 860 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Pterocles alchata (Linnaeus, 1766), Aquila fasciata Vieillot, 1822, Tetrax tetrax (Linnaeus, 1758))",
 "Year 2023-2024"
 ]
}

 The dataset includes 860 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036475-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vrbyac
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alytes muletensis (Sanchíz & Adrover, 1979)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036476-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f79ew4
title: Occurrence Download

description: A dataset containing 425 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Darevskia dahli (Darevsky, 1957)"
 ]
}

 The dataset includes 425 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036477-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13850959
title: Localized Topological States beyond Fano Resonances via Counter-Propagating Wave Mode Conversion in Piezoelectric Microelectromechanical Devices

description: Main numerical and experimental data (Matlab .fig files) of the paper Localized Topological States beyond Fano Resonances via Counter-Propagating Wave Mode Conversion in Piezoelectric Microelectromechanical Devices.
DOI: 10.5281/zenodo.13850960
title: Localized Topological States beyond Fano Resonances via Counter-Propagating Wave Mode Conversion in Piezoelectric Microelectromechanical Devices

description: Main numerical and experimental data (Matlab .fig files) of the paper Localized Topological States beyond Fano Resonances via Counter-Propagating Wave Mode Conversion in Piezoelectric Microelectromechanical Devices.
DOI: 10.6084/m9.figshare.27143010
title: Data Share.zip

description: Data of 5 figures in the main text and supplementary information for Nature Communications manuscript "Individually Addressed Entangling Gates in a Two-Dimensional Ion Crystal"
DOI: 10.6084/m9.figshare.27143010.v1
title: Data Share.zip

description: Data of 5 figures in the main text and supplementary information for Nature Communications manuscript "Individually Addressed Entangling Gates in a Two-Dimensional Ion Crystal"