cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12757004
title: Additional file 7 of SMRT and Illumina RNA sequencing reveal novel insights into the heat stress response and crosstalk with leaf senescence in tall fescue

description: Additional file 7. The differential expression of DEGs in comparison V2.
DOI: 10.6084/m9.figshare.8041607
title: Combining Multiple Observational Data Sources to Estimate Causal Effects

description: The era of big data has witnessed an increasing availability of multiple data sources for statistical analyses. We consider estimation of causal effects combining big main data with unmeasured confounders and smaller validation data with supplementary information on these confounders. Under the unconfoundedness assumption with completely observed confounders, the smaller validation data allow for constructing consistent estimators for causal effects, but the big main data can only give error-prone estimators in general. However, by leveraging the information in the big main data in a principled way, we can improve the estimation efficiencies yet preserve the consistencies of the initial estimators based solely on the validation data. Our framework applies to asymptotically normal estimators, including the commonly used regression imputation, weighting, and matching estimators, and does not require a correct specification of the model relating the unmeasured confounders to the observed variables. We also propose appropriate bootstrap procedures, which makes our method straightforward to implement using software routines for existing estimators. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.6465692
title: Additional file 2: of Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

description: Dataset S1 Maximum likelihood tree based on 663 representative 16S rRNA alignment (AdditionalÂ fileÂ 7: Dataset S5), basis for Fig.Â 2a, in result format (663_OTU_RAxML_bipartitionsBranchLabels. result, generated by The CIPRES Science Gateway). (RESULT 39 kb)
DOI: 10.25582/data.2023-01.2709995/2298239
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.6465707
title: Additional file 3: of Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

description: Dataset S2 Neighbor-Joining tree based on 663 representative 16S rRNA alignment (Additional file 7: Dataset S5), basis for Additional file 1: Figure S2, in newick format (663_OTU_800bp_NJ_tree.nwk, generated by MEGA7 seeing Additional file 6: Supplementary Methods). (NWK 25 kb)
DOI: 10.6084/m9.figshare.6465707.v1
title: Additional file 3: of Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

description: Dataset S2 Neighbor-Joining tree based on 663 representative 16S rRNA alignment (Additional file 7: Dataset S5), basis for Additional file 1: Figure S2, in newick format (663_OTU_800bp_NJ_tree.nwk, generated by MEGA7 seeing Additional file 6: Supplementary Methods). (NWK 25 kb)
DOI: 10.6084/m9.figshare.14333074
title: Effectiveness of the oral human attenuated pentavalent rotavirus vaccine (RotaTeq™) postlicensure: a meta-analysis—2006–2020

description: Rotavirus (RV), which causes RV-associated gastroenteritis (RVGE), has accounted for considerable morbidity. We aimed to assess the eﬀectiveness (VE) of the oral pentavalent RV vaccine (RotaTeq™) in real-world settings in children and infants with gastroenteritis. We performed a systematic search for peer-reviewed studies published between 1 January 2006 and 1 May 2020 and a meta-analysis to calculate the VE of RotaTeq™ vaccine. The primary outcome was the pooled three-dose vaccine VE. Stratified analysis of the vaccine VEs was performed according to dosages, study design, population age, socioeconomic status (SES), introduction condition, control group types, outcomes of RV disease, and RV strains. After screening 2359 unique records, 28 studies were included and meta-analyzed. The overall VE estimate was 84% (95% confidence interval [CI], 80–87%). Stratified analyses revealed a nonnegligible impact of factors such as study design and SES. Other factors did not show great impart to VE with no significant differences between groups. RotaTeq™ is effective against RV infection, especially in high-income countries. Adopting suitable study methods and expansion of RV surveillance in low-income regions is crucial to assess VE in real-life settings and provide feasible vaccine regimens to improve vaccine VE.
DOI: 10.25582/data.2023-01.2710965/2298240
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.25211168
title: Design of multi-service platform and digital payment technology based on Transport Services in Rwanda.csv

description: This study planned to design a transportation mobile application in Rwanda that could meet client assumptions for convenience.
DOI: 10.6084/m9.figshare.25211168.v1
title: Design of multi-service platform and digital payment technology based on Transport Services in Rwanda.csv

description: This study planned to design a transportation mobile application in Rwanda that could meet client assumptions for convenience.
DOI: 10.25582/data.2023-01.2707716/2298241
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-02.2732772/2298242
title: Data for EMSL Project 51287 from February 2023
DOI: 10.6084/m9.figshare.14854283.v1
title: Infiltrating T-cell abundance combined with EMT-related gene expression as a prognostic factor of colon cancer

description: EMT-related gene expression reportedly exhibits correlation with the anti-tumor immunity of T cells. In the present study, we explored the factors that might affect the efficacy of immunotherapy in colon cancer with treatment. In this regard, RNA-seq and clinical data of 469 colon cancer samples derived from the Cancer Genome Atlas (TCGA) database were used to calculate infiltrating T-cell abundance (ITA), to illustrate a pathway enrichment analysis, and to construct Cox proportional hazards (CPH) regression models. Subsequently, the RNA-seq and clinical data of 177 colon cancer samples derived from the GSE17536 cohort were used to validate the CPH regression models. We found that ITA showed correlation with EMT-related gene expression, and that it was not an independent prognostic factor for colon cancer. However, upon comparison of two groups with the same ITA, higher EMT expression helped predicted a worse prognosis, whereas a higher ITA could help predict a better prognosis upon comparison of two groups with the same EMT. Additionally, seven genes were found to be statistically related to the prognosis of patients with colon cancer. These results suggest that the balance between ITA and EMT-related gene expression is conducive to the prognosis of patients with colon cancer, and TPM1 is necessary to further explore the common target genes of immune checkpoint blockade.
DOI: 10.6084/m9.figshare.6465770.v1
title: Additional file 7: of Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

description: Dataset S5 Alignment of 663 representative 16S rRNA sequences used for inferring tree in main text Fig.Â 2a and AdditionalÂ fileÂ 1: Figure S2. (FASTA 32892 kb)
DOI: 10.25582/data.2023-02.2733289/2298243
title: Data for EMSL Project 51287 from February 2023
DOI: 10.25582/data.2023-02.2732533/2298244
title: Data for EMSL Project 51287 from February 2023
DOI: 10.25582/data.2023-02.2733130/2298245
title: Data for EMSL Project 51287 from February 2023
DOI: 10.25582/data.2023-01.2708241/2298246
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2710986/2298247
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2710179/2298248
title: Data for EMSL Project 51287 from January 2023
DOI: 10.4121/5e55cf64-7912-4b07-8b8e-c2afb067c3e7.v2
title: Dataset on the PhD thesis "Heritage Beyond Singular Narratives: Embracing Diversity in Participatory Heritage Planning Empowered by Artificial Intelligence"

description: By comparing the different stakeholders’ perspectives, discovered using an AI approach from multiple unstructured data sources, this research develops an approach to reveal alignments and conflicts between academic experts, policymakers, and users to shed light on the conflicts and alignments embedded in the multi-stakeholder setting and as a step further towards inclusive data-supported heritage planning. To provide empirical evidence of such an approach, thisresearch explores various stakeholders’ perspectives on the cultural significance conveyed to a specific case study, the city of Yazd, Iran. The focus of research is on windcatchers which are key attributes conveying outstanding universal value, as inscribed on the UNESCO World Heritage List (UNESCO, 2017). This research discusses alignments and conflicts in the attributes and values, by comparing the perspectives of policy makers, users, and academic experts. Based on the analysis, a critical reflection on the changes expected in heritage planning is discussed. This study offers a comprehensive methodology with a customized AI-supported tool to detect alignments and conflicts in participation processes applied to heritage planning. Besides, this study reveals a critical gap that requires more reflection on the changes expected in heritage planning, by considering how different stakeholders may grow in their contribution to the definition of cultural significance in heritage planning, given the rising importance of public participation.These datasets contain the opinions of three main stakeholdr groups on the cultural significance of windcatchers in Yazd, Iran:experts (academic publications)users (social media: Instagram and Twitter/X)policy makers (local/national/international documents) <br>The analysis results have been published in journal papers, conference papers, and a book chapter. <br>There are three Excel files containing various sheets:general information: the publications' information namely, title, year of publication, authors, etc.sentences_values: titles, relevant sentences, and values addressed in the sentencessentences_attributes: titles, relevant sentences, and attributes addressed in the sentencesname entity recognition (NER): relevant sentences, relevant words, and the class of NER associated with the wordsentiment and emotion analysis: relevant sentences, sentiments, emotions<br>
DOI: 10.25582/data.2023-02.2732315/2298249
title: Data for EMSL Project 51287 from February 2023
DOI: 10.6084/m9.figshare.14853488.v1
title: Additional file 2 of Proteomic and Transcriptomic Analyses Provide Novel Insights into the Crucial Roles of Host-Induced Carbohydrate Metabolism Enzymes in Xanthomonas oryzae pv. oryzae Virulence and Rice-Xoo Interaction

description: Additional file 2: Table S2. Gene ontology (GO) annotations of DEGs from four pairwise comparisons.
DOI: 10.25582/data.2023-01.2707112/2298250
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.6465770
title: Additional file 7: of Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

description: Dataset S5 Alignment of 663 representative 16S rRNA sequences used for inferring tree in main text Fig.Â 2a and AdditionalÂ fileÂ 1: Figure S2. (FASTA 32892 kb)
DOI: 10.6084/m9.figshare.6465719
title: Additional file 4: of Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

description: Dataset S3 Similarity between any 16S rRNA gene sequences of Woesearchaeota in SILVA_SSU_128 used for inferring the minimum intra-group similarity and the coverage of sequences within the corresponding subgroups in Fig.Â 2b and AdditionalÂ fileÂ 1: Table S4. This dataset is a list. (XLSX 314 kb)
DOI: 10.25582/data.2023-01.2710621/2298251
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.12757100.v1
title: Additional file 2 of Characteristics and reference ranges of CD4+T cell subpopulations among healthy adult Han Chinese in Shanxi Province, North China

description: Additional file 2 Figure S1. Analysis of lymphocyte subsets by flow cytometry. A: Gating strategy for T cells, CD4+T cells, CD8+T cells: a expressed as a single parameter of CD45 and scatter; b T cells (CD3+); c CD4+T cells (CD3+CD4+); d CD8+T cells (CD3+CD8+). B: Gating strategy for B cells and NK cells: a expressed as a single parameter of CD45 and scatter; b expressed as a single parameter of CD3− and scatter; c: B cells (CD3−CD19+); d: NK cells (CD3−CD16+CD56+). Figure S2. Analysis of CD4+T subpopulations by flow cytometry. A: Gating strategy for Th1 and Th17 cells: a expressed as a single parameter of CD4 and scatter; b Th1 (CD4+IFN-γ+); c Th17 (CD4+IL-17+). B: Gating strategy for Th2 cells: a expressed as a single parameter of CD4 and scatter; b Th2 (CD4+IL-4+). C: Gating strategy for Treg cells: a expressed as a single parameter of CD4 and scatter; b Treg (CD4+CD25+Foxp3+).
DOI: 10.6084/m9.figshare.22194261.v1
title: Grade 4 Neutropenia Frequency as a Binary Risk Predictor for Adverse Clinical Consequences of Chemotherapy‑Induced Neutropenia: A Meta-analysis

description: Neutropenia is the major toxicity of myelosuppressive cancer chemotherapy. Grade 4 neutropenia (Gr4N) is a measure of chemotherapy-induced neutropenia (CIN) severity. We conducted a meta-analysis of CIN data. Gr4N incidence was significantly correlated with febrile neutropenia (FN), days of severe neutropenia (DSN), and nadir absolute neutrophil count (ANC), which are all important predictors of morbidity. With a Gr4N threshold of 65%, both FN and DSN were below levels for low risk of adverse CIN outcomes. Gr4N was highly predictive for adverse CIN outcomes, and a 65% threshold demarcated low vs. high risk for FN and other adverse CIN outcomes.
DOI: 10.25582/data.2023-01.2715436/2298252
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.6465734
title: Additional file 5: of Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

description: Dataset S4 Functional genes annotation of 19 genomic bins by BLASTing against the GenBank NCBI-nr Dataset used for inferring the metabolic potentials in the main text Figs.Â 5 and 6 as well as AdditionalÂ fileÂ 1: Figure S4. (XLSX 1571 kb)
DOI: 10.6084/m9.figshare.14333329
title: Table S4. Carboniferous sedimentary provenance and tectonic setting in the Darbut region of Western Junggar (NW China): evidence from mineralogy, geochemistry and detrital zircon U–Pb dating

description: Table S4: Zircon Hf isotopic data of Carboniferous clastic rocks from the Darbut region.
DOI: 10.25582/data.2023-01.2708613/2298253
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.14333329.v1
title: Table S4. Carboniferous sedimentary provenance and tectonic setting in the Darbut region of Western Junggar (NW China): evidence from mineralogy, geochemistry and detrital zircon U–Pb dating

description: Table S4: Zircon Hf isotopic data of Carboniferous clastic rocks from the Darbut region.
DOI: 10.6084/m9.figshare.6465791
title: Additional file 8: of Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

description: Dataset S6 Subgroup-assigned taxonomy of 663 representative 16S rRNA sequences (Woese_97_taxonomy_7_levels) used for determining the distribution patterns of each subgroup in the seven types of habitats throughout 133 libraries/studies in main text Fig.Â 3a and AdditionalÂ fileÂ 1: Figure S3. (TXT 106 kb)
DOI: 10.6084/m9.figshare.14333335
title: Table S6. Carboniferous sedimentary provenance and tectonic setting in the Darbut region of Western Junggar (NW China): evidence from mineralogy, geochemistry and detrital zircon U–Pb dating

description: Table S6: Comparison of major- and trace-element data of the studied samples from the Darbut region with greywackes from various tectonic settings.
DOI: 10.6084/m9.figshare.14333335.v1
title: Table S6. Carboniferous sedimentary provenance and tectonic setting in the Darbut region of Western Junggar (NW China): evidence from mineralogy, geochemistry and detrital zircon U–Pb dating

description: Table S6: Comparison of major- and trace-element data of the studied samples from the Darbut region with greywackes from various tectonic settings.
DOI: 10.25582/data.2023-01.2709414/2298254
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.14333338
title: Table S2. Carboniferous sedimentary provenance and tectonic setting in the Darbut region of Western Junggar (NW China): evidence from mineralogy, geochemistry and detrital zircon U–Pb dating

description: Table S2: Heavy mineral assemblage and relative percentage contents (wt.%) of Carboniferous clastic rocks from the Darbut region.
DOI: 10.6084/m9.figshare.14333338.v1
title: Table S2. Carboniferous sedimentary provenance and tectonic setting in the Darbut region of Western Junggar (NW China): evidence from mineralogy, geochemistry and detrital zircon U–Pb dating

description: Table S2: Heavy mineral assemblage and relative percentage contents (wt.%) of Carboniferous clastic rocks from the Darbut region.
DOI: 10.25582/data.2023-02.2733129/2298255
title: Data for EMSL Project 51287 from February 2023
DOI: 10.6084/m9.figshare.14333344
title: Table S5. Carboniferous sedimentary provenance and tectonic setting in the Darbut region of Western Junggar (NW China): evidence from mineralogy, geochemistry and detrital zircon U–Pb dating

description: Table S5: Whole-rock major- and trace-element data of Carboniferous rocks from the Darbut region, Western Junggar.
DOI: 10.6084/m9.figshare.14333344.v1
title: Table S5. Carboniferous sedimentary provenance and tectonic setting in the Darbut region of Western Junggar (NW China): evidence from mineralogy, geochemistry and detrital zircon U–Pb dating

description: Table S5: Whole-rock major- and trace-element data of Carboniferous rocks from the Darbut region, Western Junggar.
DOI: 10.25582/data.2023-01.2710954/2298256
title: Data for EMSL Project 51287 from January 2023
DOI: 10.25582/data.2023-01.2712435/2298257
title: Data for EMSL Project 51287 from January 2023
DOI: 10.6084/m9.figshare.14853506
title: Additional file 8 of Proteomic and Transcriptomic Analyses Provide Novel Insights into the Crucial Roles of Host-Induced Carbohydrate Metabolism Enzymes in Xanthomonas oryzae pv. oryzae Virulence and Rice-Xoo Interaction

description: Additional file 8: Table S8. DEGs from four pairwise comparisons used for venn diagram analysis.
DOI: 10.6084/m9.figshare.6465791.v1
title: Additional file 8: of Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

description: Dataset S6 Subgroup-assigned taxonomy of 663 representative 16S rRNA sequences (Woese_97_taxonomy_7_levels) used for determining the distribution patterns of each subgroup in the seven types of habitats throughout 133 libraries/studies in main text Fig.Â 3a and AdditionalÂ fileÂ 1: Figure S3. (TXT 106 kb)
DOI: 10.6084/m9.figshare.14333350
title: Table S1. Carboniferous sedimentary provenance and tectonic setting in the Darbut region of Western Junggar (NW China): evidence from mineralogy, geochemistry and detrital zircon U–Pb dating

description: Table S1: Calculated modal composition of point-count data from Carboniferous sandstones in the Darbut region.
DOI: 10.6084/m9.figshare.14853500.v1
title: Additional file 6 of Proteomic and Transcriptomic Analyses Provide Novel Insights into the Crucial Roles of Host-Induced Carbohydrate Metabolism Enzymes in Xanthomonas oryzae pv. oryzae Virulence and Rice-Xoo Interaction

description: Additional file 6: Table S6. MapMan analysis of DEGs involved in different metabolic pathways.
DOI: 10.6084/m9.figshare.14333350.v1
title: Table S1. Carboniferous sedimentary provenance and tectonic setting in the Darbut region of Western Junggar (NW China): evidence from mineralogy, geochemistry and detrital zircon U–Pb dating

description: Table S1: Calculated modal composition of point-count data from Carboniferous sandstones in the Darbut region.
DOI: 10.15468/dl.qunhq8
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trachemys scripta elegans (Wied, 1838))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1900",
 "BasisOfRecord is one of (Specimen)",
 "Country is one of (Germany, France, Spain, Netherlands, Belgium, United Kingdom of Great Britain and Northern Ireland, Italy, Portugal, Austria, Switzerland)",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 20000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105742-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vx5hgr
title: Occurrence Download

description: A dataset containing 761 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gymnadenia orchidis Lindl."
 ]
}

 The dataset includes 761 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105740-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ysmjn8
title: Occurrence Download

description: A dataset containing 8619 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Escalloniales"
 ]
}

 The dataset includes 8619 records from 262 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105739-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.meczvz
title: Occurrence Download

description: A dataset containing 851 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Anchytarsus Guérin-Méneville, 1843)"
 ]
}

 The dataset includes 851 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105744-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7kvzv4
title: Occurrence Download

description: A dataset containing 59771 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Mustela erminea Linnaeus, 1758",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 59771 records from 478 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105741-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3mptx7
title: Occurrence Download

description: A dataset listing the 73069 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset's 73069 records were derived from 2274 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105737-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.