cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26659603.v1
title: Additional file 5 of Analysis of differentially expressed genes in torn rotator cuff tendon tissues in diabetic patients through RNA-sequencing

description: Supplementary Material 4. QPCR validation of differentially expressed mRNAs
DOI: 10.6084/m9.figshare.26659600
title: Additional file 4 of Analysis of differentially expressed genes in torn rotator cuff tendon tissues in diabetic patients through RNA-sequencing

description: Supplementary Material 4. Differentially expressed LncRNAs
DOI: 10.6084/m9.figshare.26566787
title: Additional file 2 of Impact of population based indoor residual spraying with and without mass drug administration with dihydroartemisinin-piperaquine on malaria prevalence in a high transmission setting: a quasi-experimental controlled before-and-after trial in northeastern Uganda

description: Additional file 2. Appendix III: Malaria prevalence tables.
DOI: 10.17632/v7rxm9hb7j.1
title: Spatially-Resolved Human Brain Microphysiological System Reveals Developing a Positive Mindset Mitigating Alzheimer’s Disease

description: source data
DOI: 10.17632/v7rxm9hb7j.2
title: Spatially-Resolved Human Brain Microphysiological System Reveals Developing a Positive Mindset Mitigating Alzheimer’s Disease

description: source data
DOI: 10.15468/dl.k4msav
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((144.493253 -36.777736, 144.493253 -36.779982, 144.495499 -36.779982, 144.495499 -36.777736, 144.493253 -36.777736))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066229-240626123714530/datasets/export for details.
DOI: 10.15468/dl.nwuvwd
title: Occurrence Download

description: A dataset containing 36515 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxon occurrence data for the FungalRoot database"
 ]
}

 The dataset includes 36515 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066226-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26566787.v1
title: Additional file 2 of Impact of population based indoor residual spraying with and without mass drug administration with dihydroartemisinin-piperaquine on malaria prevalence in a high transmission setting: a quasi-experimental controlled before-and-after trial in northeastern Uganda

description: Additional file 2. Appendix III: Malaria prevalence tables.
DOI: 10.5517/ccdc.csd.cc29x20b
title: CCDC 2142131: Experimental Crystal Structure Determination

description: Related Article: Monique A. van der Veen, Stefano Canossa, Mohammad Wahiduzzaman, Gwilherm Nenert, Dominik Frohlich, Davide Rega, Helge Reinsch, Leonid Shupletsov, Karen Markey, Dirk E. De Vos, Mischa Bonn, Norbert Stock, Guillaume Maurin, Ellen H. G. Backus|2023|Adv.Mater.|36|2210050|doi:10.1002/adma.202210050
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jlw23
title: CCDC 2341835: Experimental Crystal Structure Determination

description: Related Article: Anna Laura Sanna, Simone Acca, Enrico Podda, Antonello Mascia, Anna Pintus, M. Carla Aragoni, Vito Lippolis, Carlo Ricci, Piero Cosseddu, Massimiliano Arca, Giuseppe Sforazzini|2024|J.Mater.Chem.C|12|11352|doi:10.1039/D4TC01791A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jlw34
title: CCDC 2341836: Experimental Crystal Structure Determination

description: Related Article: Anna Laura Sanna, Simone Acca, Enrico Podda, Antonello Mascia, Anna Pintus, M. Carla Aragoni, Vito Lippolis, Carlo Ricci, Piero Cosseddu, Massimiliano Arca, Giuseppe Sforazzini|2024|J.Mater.Chem.C|12|11352|doi:10.1039/D4TC01791A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jnwx0
title: CCDC 2343783: Experimental Crystal Structure Determination

description: Related Article: Weiren Zhong, Yanchen Wu, Yuting Lin, Shouji Li, Jianyu Zhang, Xu-Min Cai|2024|J.Mater.Chem.C|12|11394|doi:10.1039/D4TC01287A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jq8m5
title: CCDC 2345107: Experimental Crystal Structure Determination

description: Related Article: Shintaro Ishida, Yusuke Yoshida, Takeaki Iwamoto|2024|Chem.Commun.|60|8288|doi:10.1039/D4CC02147A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jq8n6
title: CCDC 2345108: Experimental Crystal Structure Determination

description: Related Article: Shintaro Ishida, Yusuke Yoshida, Takeaki Iwamoto|2024|Chem.Commun.|60|8288|doi:10.1039/D4CC02147A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jq8p7
title: CCDC 2345109: Experimental Crystal Structure Determination

description: Related Article: Shintaro Ishida, Yusuke Yoshida, Takeaki Iwamoto|2024|Chem.Commun.|60|8288|doi:10.1039/D4CC02147A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/828hp2sxw6.1
title: Household Spending Diversity, Aggregation and the Value of Product Variety Economic Modelling

description: This data contains instructions and do files required to replicate results discussed in the manuscript "Household Spending Diversity, Aggregation and the Value of Product Variety Economic Modelling"
DOI: 10.5517/ccdc.csd.cc2jq8q8
title: CCDC 2345110: Experimental Crystal Structure Determination

description: Related Article: Shintaro Ishida, Yusuke Yoshida, Takeaki Iwamoto|2024|Chem.Commun.|60|8288|doi:10.1039/D4CC02147A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jq8r9
title: CCDC 2345111: Experimental Crystal Structure Determination

description: Related Article: Shintaro Ishida, Yusuke Yoshida, Takeaki Iwamoto|2024|Chem.Commun.|60|8288|doi:10.1039/D4CC02147A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.26659648
title: Additional file 1 of The MuSK-BMP pathway maintains myofiber size in slow muscle through regulation of Akt-mTOR signaling

description: Additional file 1: Supplementary Fig. S1. Immortalized WT or ∆Ig3-MuSK  myoblasts were cultured in differentiating conditions for 3 days. The cultures were labeled with the pan-skeletal muscle myosin anti-MyHC (green; see “Methods”) and DAPI as described in methods. Note that ∆Ig3-MuSK cells differentiated into multi-nucleated myotubes that expressed MyHC. Supplementary Fig. S2. Supporting data for Western Blot in Fig. 2D showing total protein visualized using the No-Stain reagent (see “Methods”). Supplementary Fig. S3. Agrin-induced AChR clustering is comparable in WT and ∆Ig3-MuSK myotubes. WT and ∆Ig3-MuSK cultured primary myotubes were treated with agrin for 16 hr. (A) Visualization of AChR distribution. AChR clusters are denoted by arrows. (B) Quantification of AChR clusters. The agrin response was comparable in WT and ∆Ig3-MuSK  myotubes (two-way ANOVA with Bonferroni’s multiple comparisons). Supplementary Fig. S4. Increased type I collagen levels in ∆Ig3-MuSK soleus. Sections of 3-month-old soleus muscle from WT and ∆Ig3-MuSK  were stained with antibodies to Type I Collagen (red) and DAPI (blue). (A) Imaging. Note the increase in interstitial collagen levels in the mutant muscle compared to WT. (B) Quantification showed that Type I collagen levels were increased by 49% in the ∆Ig3-MuSK soleus (577.6 ± 33.7, n=47 and 860.6 ± 37.3, n=45 in WT and ∆Ig3-MuSK respectively, ****p&lt; 0.0001, unpaired t-test; n=6 muscles per genotype; 5-6 sections/muscle. Supplementary Fig. S5. Supporting data for Western Blot in Fig. 7A (Soleus) and 7B (TA) showing total protein staining (Ponceau).  Supplementary Fig. S6. P-S6 and p4EBP1 are down-regulated in ∆Ig3-MuSK soleus. Homogenates of  3-month-old soleus muscle from a different cohort of mice than used in Fig. 7 (see “Methods”) were separated by SDS-PAGE and probed with the indicated antibodies to phosphorylated (‘p’; A) or unphosphorylated (B) 4EBP1, S6, or Akt.  Both blots were probed for GAPDH as a loading control. Total protein (Ponceau stain; C,D) of the same blots obtained prior to the antibody incubations (N= 5 WT and 5 ∆Ig3-MuSK mice, * p&lt;0.05). Note that the levels of both p4EBP1 and P-S6 were downregulated in the ∆Ig3-MuSK soleus.  Supplementary Fig. S7. Expression levels of the reference genes used for qRT-PCR for myoblasts (A; 18S ribosomal RNA); and for soleus (B) and EDL (C) muscles (Villin-like mRNA). Note the comparable expression between genotypes.
DOI: 10.6084/m9.figshare.26659648.v1
title: Additional file 1 of The MuSK-BMP pathway maintains myofiber size in slow muscle through regulation of Akt-mTOR signaling

description: Additional file 1: Supplementary Fig. S1. Immortalized WT or ∆Ig3-MuSK  myoblasts were cultured in differentiating conditions for 3 days. The cultures were labeled with the pan-skeletal muscle myosin anti-MyHC (green; see “Methods”) and DAPI as described in methods. Note that ∆Ig3-MuSK cells differentiated into multi-nucleated myotubes that expressed MyHC. Supplementary Fig. S2. Supporting data for Western Blot in Fig. 2D showing total protein visualized using the No-Stain reagent (see “Methods”). Supplementary Fig. S3. Agrin-induced AChR clustering is comparable in WT and ∆Ig3-MuSK myotubes. WT and ∆Ig3-MuSK cultured primary myotubes were treated with agrin for 16 hr. (A) Visualization of AChR distribution. AChR clusters are denoted by arrows. (B) Quantification of AChR clusters. The agrin response was comparable in WT and ∆Ig3-MuSK  myotubes (two-way ANOVA with Bonferroni’s multiple comparisons). Supplementary Fig. S4. Increased type I collagen levels in ∆Ig3-MuSK soleus. Sections of 3-month-old soleus muscle from WT and ∆Ig3-MuSK  were stained with antibodies to Type I Collagen (red) and DAPI (blue). (A) Imaging. Note the increase in interstitial collagen levels in the mutant muscle compared to WT. (B) Quantification showed that Type I collagen levels were increased by 49% in the ∆Ig3-MuSK soleus (577.6 ± 33.7, n=47 and 860.6 ± 37.3, n=45 in WT and ∆Ig3-MuSK respectively, ****p&lt; 0.0001, unpaired t-test; n=6 muscles per genotype; 5-6 sections/muscle. Supplementary Fig. S5. Supporting data for Western Blot in Fig. 7A (Soleus) and 7B (TA) showing total protein staining (Ponceau).  Supplementary Fig. S6. P-S6 and p4EBP1 are down-regulated in ∆Ig3-MuSK soleus. Homogenates of  3-month-old soleus muscle from a different cohort of mice than used in Fig. 7 (see “Methods”) were separated by SDS-PAGE and probed with the indicated antibodies to phosphorylated (‘p’; A) or unphosphorylated (B) 4EBP1, S6, or Akt.  Both blots were probed for GAPDH as a loading control. Total protein (Ponceau stain; C,D) of the same blots obtained prior to the antibody incubations (N= 5 WT and 5 ∆Ig3-MuSK mice, * p&lt;0.05). Note that the levels of both p4EBP1 and P-S6 were downregulated in the ∆Ig3-MuSK soleus.  Supplementary Fig. S7. Expression levels of the reference genes used for qRT-PCR for myoblasts (A; 18S ribosomal RNA); and for soleus (B) and EDL (C) muscles (Villin-like mRNA). Note the comparable expression between genotypes.
DOI: 10.6084/m9.figshare.26659651.v1
title: Additional file 2 of The MuSK-BMP pathway maintains myofiber size in slow muscle through regulation of Akt-mTOR signaling

description: Additional file 2: Table S1. Differentially-expressed genes in WT and ∆Ig3-MuSK TA. Table S2. Differentially-expressed genes in WT and ∆Ig3-MuSK Soleus. Table S3. GO terms for ∆Ig3-MuSK soleus and TA. Table S4. Dysregulated Akt-mTOR pathway genes in the soleus compared to TA. Table S5. Atrogenes expression in WT and ∆Ig3-MuSK soleus and TA muscle.
DOI: 10.14278/rodare.2029
title: Training data of a machine learning modeling framework for the air quality forecasts in the Pacific Northwest, USA.

description: These files are the training data of a machine learning modeling framework for the air quality forecasts in the Pacific Northwest (PNW), USA.

O3.zip contains the AQS observations data of O3.

PM_FRM.zip contains the AQS data of PM2.5 using federal reference methods (FRM).

PM_nFRM.zip contains the AQS data of PM2.5 using “FRM-like” methods.

WRF_pkl.zip contains the archived WRF data for the AQS sites in the PNW.
DOI: 10.14278/rodare.2028
title: Training data of a machine learning modeling framework for the air quality forecasts in the Pacific Northwest, USA.

description: These files are the training data of a machine learning modeling framework for the air quality forecasts in the Pacific Northwest (PNW), USA.

O3.zip contains the AQS observations data of O3.

PM_FRM.zip contains the AQS data of PM2.5 using federal reference methods (FRM).

PM_nFRM.zip contains the AQS data of PM2.5 using “FRM-like” methods.

WRF_pkl.zip contains the archived WRF data for the AQS sites in the PNW.
DOI: 10.17632/gbcxky8wwz.1
title: Scopus database about teaching statistics

description: Scopus database about teaching statistics includes 190 document metadata.
DOI: 10.15468/dl.kxg28w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.593462 -32.40292, 149.593462 -32.405166, 149.595708 -32.405166, 149.595708 -32.40292, 149.593462 -32.40292))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066232-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26566964.v1
title: Additional file 10 of Dynamic patterns of gene expression and regulatory variation in the maize seed coat

description: Additional file 10: Table S6. List of oligonucleotides used for qRT‒PCR.
DOI: 10.6084/m9.figshare.26566955
title: Additional file 7 of Dynamic patterns of gene expression and regulatory variation in the maize seed coat

description: Additional file 7: Table S3. The average correlation coefficients of three biological replicates in three marterials at each time point.
DOI: 10.6084/m9.figshare.26566964
title: Additional file 10 of Dynamic patterns of gene expression and regulatory variation in the maize seed coat

description: Additional file 10: Table S6. List of oligonucleotides used for qRT‒PCR.
DOI: 10.15468/dl.th7wqy
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((145.023261 -36.762016, 145.023261 -36.766507, 145.029999 -36.766507, 145.029999 -36.762016, 145.023261 -36.762016)), ((145.029999 -36.766507, 145.029999 -36.768753, 145.025507 -36.768753, 145.025507 -36.777736, 145.023261 -36.777736, 145.023261 -36.784474, 145.03449 -36.784474, 145.03449 -36.782228, 145.041228 -36.782228, 145.041228 -36.777736, 145.038982 -36.777736, 145.038982 -36.770999, 145.041228 -36.770999, 145.041228 -36.768753, 145.03449 -36.768753, 145.03449 -36.766507, 145.029999 -36.766507)))"
 ]
}

 The dataset includes 54 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066233-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26659852
title: Additional file 28 of Quantification of putative ovarian cancer serum protein biomarkers using a multiplexed targeted mass spectrometry assay

description: Additional file 28: Table S1. Linearity, LOD, and LOQ values for the 64 peptides corresponding to the 23 proteins.
DOI: 10.6084/m9.figshare.26659852.v1
title: Additional file 28 of Quantification of putative ovarian cancer serum protein biomarkers using a multiplexed targeted mass spectrometry assay

description: Additional file 28: Table S1. Linearity, LOD, and LOQ values for the 64 peptides corresponding to the 23 proteins.
DOI: 10.6084/m9.figshare.26659855
title: Additional file 29 of Quantification of putative ovarian cancer serum protein biomarkers using a multiplexed targeted mass spectrometry assay

description: Additional file 29: Table S2. Validation of repeatability to evaluate the PRM assay performance.
DOI: 10.6084/m9.figshare.26659855.v1
title: Additional file 29 of Quantification of putative ovarian cancer serum protein biomarkers using a multiplexed targeted mass spectrometry assay

description: Additional file 29: Table S2. Validation of repeatability to evaluate the PRM assay performance.
DOI: 10.6084/m9.figshare.26659858
title: Additional file 30 of Quantification of putative ovarian cancer serum protein biomarkers using a multiplexed targeted mass spectrometry assay

description: Additional file 30: Table S3. Selectivity to evaluate the PRM assay specificity of the 64 peptides: Slope values.
DOI: 10.6084/m9.figshare.26659858.v1
title: Additional file 30 of Quantification of putative ovarian cancer serum protein biomarkers using a multiplexed targeted mass spectrometry assay

description: Additional file 30: Table S3. Selectivity to evaluate the PRM assay specificity of the 64 peptides: Slope values.
DOI: 10.6084/m9.figshare.26659861
title: Additional file 31 of Quantification of putative ovarian cancer serum protein biomarkers using a multiplexed targeted mass spectrometry assay

description: Additional file 31: Table S4. Selectivity to evaluate the PRM assay specificity of the 64 peptides: Half-medium light-to-heavy ratios.
DOI: 10.6084/m9.figshare.26659861.v1
title: Additional file 31 of Quantification of putative ovarian cancer serum protein biomarkers using a multiplexed targeted mass spectrometry assay

description: Additional file 31: Table S4. Selectivity to evaluate the PRM assay specificity of the 64 peptides: Half-medium light-to-heavy ratios.
DOI: 10.6084/m9.figshare.26659864
title: Additional file 32 of Quantification of putative ovarian cancer serum protein biomarkers using a multiplexed targeted mass spectrometry assay

description: Additional file 32: Table S5. Selectivity to evaluate the PRM assay specificity of the 64 peptides: Ion transition ratios.
DOI: 10.5281/zenodo.13939897
title: EEG dataset for the paper "Inharmonicity enhances brain signals of attentional capture and auditory stream segregation"

description: This is a dataset containing EEG recordings of 37 people that took part in a roving oddball paradigm with harmonic and inharmonic sounds. See the paper "Inharmonicity enhances brain signals of attentional capture and auditory stream segregation" for details of the procedure and participant demography.

EEG was recorded using a 32-channel active BrainVision system at the Center for Functionally Integrative Neuroscience, Aarhus University, Denmark. Auditory stimuli were delivered using headphones while the participants were watching a silent movie. The triggers were three-digit integer numbers in the format XYZ where:



X denotes deviance: 0 - standard, 1-deviant;

Y denotes condition: 1 - harmonic, 2 - inharmonic; 3 - changing;

Z denotes frequency: f = 50 * Z Hz
DOI: 10.15468/dl.9hcda8
title: Occurrence Download

description: A dataset containing 7471 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Saccopteryx bilineata (Temminck, 1838)"
 ]
}

 The dataset includes 7471 records from 239 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004655-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e8nedn
title: Occurrence Download

description: A dataset containing 39625 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Benin",
 "GadmGid is BEN",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 39625 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004658-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uucsue
title: Occurrence Download

description: A dataset containing 203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lonchorhina orinocensis Linares & Ojasti, 1971",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 203 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010195-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.