cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.y4xr6s
title: Occurrence Download

description: A dataset containing 947441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Progne subis (Linnaeus, 1758)"
 ]
}

 The dataset includes 947441 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069332-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lwo2eu
title: Occurrence Download

description: A dataset containing 902 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "HasCoordinate is true",
 "TaxonKey is Polypodiaceae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 902 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007886-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c594jx
title: Occurrence Download

description: A dataset containing 7375 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Tremarctos ornatus (F.G.Cuvier, 1825)"
 ]
}

 The dataset includes 7375 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065639-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u5v3h7
title: Occurrence Download

description: A dataset containing 972860 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bombus Latreille, 1802)",
 "Country is one of (Sweden, Norway, Finland, Denmark, Iceland)"
 ]
}

 The dataset includes 972860 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060717-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djp88u
title: Occurrence Download

description: A dataset containing 975046 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NatureServe Network Species Occurrence Data"
 ]
}

 The dataset includes 975046 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084504-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.98amvc
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Barbastella leucomelas (Cretzschmar, 1826)"
 ]
}

 The dataset includes 104 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073780-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9icvq
title: Occurrence Download

description: A dataset containing 5106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((100.25785 -44.80648,202.91410 -44.80648,202.91410 -3.76156,100.25785 -3.76156,100.25785 -44.80648))",
 "HasCoordinate is true",
 "TaxonKey is Pogona vitticeps (Ahl, 1926)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5106 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007599-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.km8cbk
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is SILENE-FAUNE-PACA - DREAL_PACA_-_N2000_-_Naturalia_2017_12_18"
 ]
}

 The dataset includes 213 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023746-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.99qfve
title: Occurrence Download

description: A dataset containing 16946 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON(((5.241862535476685 43.294803095683314,5.241862535476685 43.25493380778211,5.340739488601685 43.25493380778211,5.340739488601685 43.294803095683314,5.241862535476685 43.294803095683314)))"
 ]
}

 The dataset includes 16946 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084259-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eltvyx
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lygosoma lanceolatum Broadley, 1990"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007599-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cagbvd
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-145.89844 -59.88894,-22.85156 -59.88894,-22.85156 47.98992,-145.89844 47.98992,-145.89844 -59.88894))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mustela africana Desmarest, 1818"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007167-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jc95ha
title: Occurrence Download

description: A dataset containing 30131 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Mexico"
 ]
 },
 "TaxonKey is Peromyscus boylii (Baird, 1855)"
 ]
}

 The dataset includes 30131 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007886-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ftrkty
title: Occurrence Download

description: A dataset containing 217 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hexaplex regius (Swainson, 1821)"
 ]
}

 The dataset includes 217 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051565-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8htbzg
title: Occurrence Download

description: A dataset containing 2485448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cisticola Kaup, 1829, Cysticola Lesson, 1831, Cistothorus Cabanis, 1850, Cestophorus J.Faust, 1892, Cirtophorus, Cystophorus, Cistothorus Cabanis, 1850, Cestophorus J.Faust, 1892, Cirtophorus, Cystophorus, Cistothorus Cabanis, 1850, Cestophorus J.Faust, 1892, Cirtophorus, Cystophorus, Clamator Kaup, 1829, Clavator C.Reid & J.Groves, 1916, Clavator E.von Martens, 1860, Clavator Philippi, 1865, Clamator Kaup, 1829, Clavator C.Reid & J.Groves, 1916, Clavator E.von Martens, 1860, Clavator Philippi, 1865, Clamator Kaup, 1829, Clavator C.Reid & J.Groves, 1916, Clavator E.von Martens, 1860, Clavator Philippi, 1865, Clamator Kaup, 1829, Clavator C.Reid & J.Groves, 1916, Clavator E.von Martens, 1860, Clavator Philippi, 1865, Clanga Adamowicz, 1854, Clanga Tyzenhausa, 1858, Changa Lee, 2016, Clania Schein, 1956, Clania Walker, 1855, Canga DaSilva, Pinto-da-Rocha & Giribet, 2010, Clanga Adamowicz, 1854, Clanga Tyzenhausa, 1858, Changa Lee, 2016, Clania Schein, 1956, Clania Walker, 1855, Canga DaSilva, Pinto-da-Rocha & Giribet, 2010, Clanga Adamowicz, 1854, Clanga Tyzenhausa, 1858, Changa Lee, 2016, Clania Schein, 1956, Clania Walker, 1855, Canga DaSilva, Pinto-da-Rocha & Giribet, 2010)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 2485448 records from 356 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012456-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ud8ks
title: Occurrence Download

description: A dataset containing 30323 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Anas discors Linnaeus, 1766"
 ]
}

 The dataset includes 30323 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052587-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8wewym
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acanthochitona angelica Dall, 1919"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007182-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kxu2ge
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Doridoxidae"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051577-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uvsygp
title: Occurrence Download

description: A dataset containing 25540 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ramphastos tucanus Linnaeus, 1758, Ramphastos tucanus Linnaeus, 1758, Ramphastos tucanus Linnaeus, 1758)",
 "DecimalLatitude is greater than or equal to -14",
 "DecimalLatitude is less than or equal to 13",
 "DecimalLongitude is greater than or equal to -83",
 "DecimalLongitude is less than or equal to -60"
 ]
}

 The dataset includes 25540 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066623-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nu5u24
title: Occurrence Download

description: A dataset containing 431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1000-2015",
 "HasCoordinate is true",
 "TaxonKey is Amphisbaena gonavensis Gans & Alexander, 1962",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 431 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006374-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u77f54
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Kenya",
 "Country is Tanzania, United Republic of",
 "Country is Ethiopia",
 "Country is Uganda"
 ]
 },
 "TaxonKey is Pennisetum brachystachyum Hack."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012472-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xybr7q
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Potos flavus (Schreber, 1774)"
 ]
}

 The dataset includes 144 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069524-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wtu5s4
title: Occurrence Download

description: A dataset containing 332725 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vicia sativa L."
 ]
}

 The dataset includes 332725 records from 882 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087701-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yfwage
title: Occurrence Download

description: A dataset containing 528768 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cygnus olor (J.F.Gmelin, 1789)",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 528768 records from 141 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013458-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4e999n
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Actinidia macrosperma C.F.Liang"
 ]
}

 The dataset includes 29 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013466-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27710133
title: The original data and images of the article“Rare rather than abundant microbial taxa diversity drives soil multi-nutrient cycling under different crop types”

description: Soil microorganisms are crucial for nutrient cycling, with abundant and rare taxa playing distinct roles. However, the mechanisms by which soil microbes influence nutrient cycling under different crop types remain unclear. In this study, we investigated the network structure, diversity, and microbial composition of croplands in the Yellow River Delta, focusing on four primary crops: soybean, maize, cotton, and sorghum. The findings revealed that the co-occurring network structure of sorghum planting soils exhibited greater complexity than other crop types. Bacterial alpha diversity in maize planting soil is highest and susceptible to environmental variations. The diversity of both rare and abundant taxa responds differently to soil nutrients depending on the crop type. Notably, the diversity of rare taxa showed a strong correlation with critical nutrients. Structural equation modeling revealed that the alpha diversity of rare bacterial and fungal taxa significantly influenced the soil multi-nutrient cycling index (MNC). Specifically, higher Shannon indices of rare bacterial taxa were associated with lower MNC, while the opposite was true for soil fungi. Soil organic carbon and soil total nitrogen are the key factors influencing alpha diversity in rare bacterial and fungal taxa. Moreover, this study provides new insights into the role of soil rare microbial diversity in the nutrient cycling of agricultural ecosystems.
DOI: 10.6084/m9.figshare.27710133.v1
title: The original data and images of the article“Rare rather than abundant microbial taxa diversity drives soil multi-nutrient cycling under different crop types”

description: Soil microorganisms are crucial for nutrient cycling, with abundant and rare taxa playing distinct roles. However, the mechanisms by which soil microbes influence nutrient cycling under different crop types remain unclear. In this study, we investigated the network structure, diversity, and microbial composition of croplands in the Yellow River Delta, focusing on four primary crops: soybean, maize, cotton, and sorghum. The findings revealed that the co-occurring network structure of sorghum planting soils exhibited greater complexity than other crop types. Bacterial alpha diversity in maize planting soil is highest and susceptible to environmental variations. The diversity of both rare and abundant taxa responds differently to soil nutrients depending on the crop type. Notably, the diversity of rare taxa showed a strong correlation with critical nutrients. Structural equation modeling revealed that the alpha diversity of rare bacterial and fungal taxa significantly influenced the soil multi-nutrient cycling index (MNC). Specifically, higher Shannon indices of rare bacterial taxa were associated with lower MNC, while the opposite was true for soil fungi. Soil organic carbon and soil total nitrogen are the key factors influencing alpha diversity in rare bacterial and fungal taxa. Moreover, this study provides new insights into the role of soil rare microbial diversity in the nutrient cycling of agricultural ecosystems.
DOI: 10.15468/dl.6u5jmc
title: Occurrence Download

description: A dataset containing 946 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-10000.0",
 "Country is United States of America",
 "TaxonKey is Anolis sagrei Duméril & Bibron, 1837",
 "Year 1947-2014"
 ]
}

 The dataset includes 946 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013468-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9x55f
title: Occurrence Download

description: A dataset listing the 83 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "Geometry POLYGON((94.15826 29.16843,94.63641 29.38025,94.84357 29.46191,94.54173 29.59835,94.31675 29.74227,94.15826 29.16843))",
 "HasGeospatialIssue is false",
 "TaxonKey is Insecta"
 ]
}

 The dataset's 83 records were derived from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013465-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kc7xsz
title: Occurrence Download

description: A dataset containing 719 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Bothrops asper (Garman, 1883)",
 "Year 1901-2001"
 ]
}

 The dataset includes 719 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013470-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14096635
title: MASLD metabolomics -- SWATH -- ReversePhase -- Lipidomics

description: We analyzed liver tissues, liver secretome (conditioned medium), and blood plasma samples from 109 obese patients undergoing bariatric surgery spanning early stages of metabolic dysfunction-associated steatotic liver diseases (MASLD). We used a combination of data-dependent acquisition (DDA) and data-independent acquisition (DIA or SWATH-MS) on SCIEX TripleTOF 6600.

Metabolites and lipids were extracted using modified chloroform-methanol biphasic extraction methods for both biological matrices. Organic and aqueous fractions were separated using RRHD Eclipse Plus C18 and SeQuant ZIC-cHILIC columns prior to DDA and DIA acquisitions, respectively.

All mzML files are deposited with ZENODO.

*** RP - Lipids - SWATH is deposited in this dataset repository ***
DOI: 10.5281/zenodo.14096753
title: MASLD metabolomics -- SWATH -- HILIC -- Metabolomics -- Positive mode

description: We analyzed liver tissues, liver secretome (conditioned medium), and blood plasma samples from 109 obese patients undergoing bariatric surgery spanning early stages of metabolic dysfunction-associated steatotic liver diseases (MASLD). We used a combination of data-dependent acquisition (DDA) and data-independent acquisition (DIA or SWATH-MS) on SCIEX TripleTOF 6600.

Metabolites and lipids were extracted using modified chloroform-methanol biphasic extraction methods for both biological matrices. Organic and aqueous fractions were separated using RRHD Eclipse Plus C18 and SeQuant ZIC-cHILIC columns prior to DDA and DIA acquisitions, respectively.

All mzML files are deposited with ZENODO.

*** HILIC - Polar metabolite - Positive mode - SWATH is deposited in this dataset repository ***
DOI: 10.5281/zenodo.14136832
title: MASLD metabolomics -- SWATH -- HILIC -- Metabolomics -- Negative mode

description: We analyzed liver tissues, liver secretome (conditioned medium), and blood plasma samples from 109 obese patients undergoing bariatric surgery spanning early stages of metabolic dysfunction-associated steatotic liver diseases (MASLD). We used a combination of data-dependent acquisition (DDA) and data-independent acquisition (DIA or SWATH-MS) on SCIEX TripleTOF 6600.

Metabolites and lipids were extracted using modified chloroform-methanol biphasic extraction methods for both biological matrices. Organic and aqueous fractions were separated using RRHD Eclipse Plus C18 and SeQuant ZIC-cHILIC columns prior to DDA and DIA acquisitions, respectively.

All mzML files are deposited with ZENODO.

*** HILIC - Polar metabolite - Negative mode - SWATH  is deposited in this dataset repository ***
DOI: 10.5281/zenodo.14048265
title: Original features and code of clinical prediction model
DOI: 10.5281/zenodo.14048266
title: Original features and code of clinical prediction model
DOI: 10.5281/zenodo.14065389
title: Original features and code of clinical prediction model
DOI: 10.5281/zenodo.14159798
title: Original features and code of clinical prediction model