cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.petfb2
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pabstiella calcarata (Cogn.) Luer"
 ]
}

 The dataset includes 73 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182159-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nqf9ay
title: Occurrence Download

description: A dataset containing 13073 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eranthis hyemalis (L.) Salisb."
 ]
}

 The dataset includes 13073 records from 173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015544-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ht57ai
title: Occurrence Download

description: A dataset containing 3168 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crocidura suaveolens (Pallas, 1811)"
 ]
}

 The dataset includes 3168 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000156-150721130643939/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yada58
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Epinephelides armatus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0187657-230224095556074/datasets/export for details.
DOI: 10.15468/dl.mi2exa
title: Occurrence Download

description: A dataset listing the 512076 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-82 -51,-62 -51,-62 0,-82 0,-82 -51))",
 "Geometry POLYGON((-126 15,-95 15,-95 50,-126 50,-126 15))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 512076 records were derived from 3267 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019856-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.19243585
title: Geochronology and Sr-Nd-Pb-Hf isotopic geochemistry of middle-late Permian granitic and volcanic rocks within the eastern margin of the Khanka Massif: petrogenesis and implications for the tectonic nature

description: The Khanka Massif forms the easternmost part of the Central Asian Orogenic Belt (CAOB) and represents an ideal location for examination of the timing and processes involved in the transition from the Palaeo-Asian to Palaeo-Pacific Ocean tectonic systems. However, it is obstructed because the late Palaeozoic tectonic attributes of the eastern margin of this massif remain unclear. In this paper, we provide zircon U-Pb ages and Hf isotopic, as well as the whole-rock Sr-Nd-Pb-Hf isotopic data for Permian granitic and volcanic rocks within the eastern margin of the Khanka Massif, with the aim of exploring the petrogenesis and their geodynamics significance. These data suggest that the Permian magmatism within the eastern margin of the Khanka Massif, composed of monzogranites and rhyolites, can be split into two stages; i.e. middle (ca. 264 to ca. 263 Ma) and late (ca. 252 Ma) Permian. The highly fractionated middle Permian monzogranites are formed in an N-S extensional setting and represent the magmatic response to the amalgamation of the Khanka and Jiamusi massifs. Middle-late Permian rhyolites with decoupled Nd-Hf isotopic compositions were derived from partial melting of metasedimentary crustal rocks. Their moderate-high zircon saturation temperatures (796–817°C) are thought to represent the involvement of ridge subduction of the Palaeo-Asian Ocean beneath the western margin of the Khanka Massif. Our findings further reinforce the existence of the ridge subduction of the Palaeo-Asian Ocean at the western margin of Khanka Massif in the Permian, while excluding the possibility of Permian Palaeo-Pacific oceanic plate subduction occurred beneath the eastern margin of the Khanka Massif in the Permian.
DOI: 10.6084/m9.figshare.14528679
title: Genome of the sea anemone Exaiptasia pallida and transcriptome profiles during tentacle regeneration

description: Annotation files of Genome of the sea anemone Exaiptasia pallida.
<br>
Reference:  
SHUM, C., et al. Genome of the sea anemone Exaiptasia pallida and transcriptome profiles during tentacle regeneration. <em>Frontiers in cell and developmental biology</em>, 2022, 10.
DOI: 10.6084/m9.figshare.7713113
title: Partial Identification of Economic Mobility: With an Application to the United States

description: The economic mobility of individuals and households is of fundamental interest. While many measures of economic mobility exist, reliance on transition matrices remains pervasive due to simplicity and ease of interpretation. However, estimation of transition matrices is complicated by the well-acknowledged problem of measurement error in self-reported and even administrative data. Existing methods of addressing measurement error are complex, rely on numerous strong assumptions, and often require data from more than two periods. In this article, we investigate what can be learned about economic mobility as measured via transition matrices while formally accounting for measurement error in a reasonably transparent manner. To do so, we develop a nonparametric partial identification approach to bound transition probabilities under various assumptions on the measurement error and mobility processes. This approach is applied to panel data from the United States to explore short-run mobility before and after the Great Recession.
DOI: 10.5281/zenodo.8127985
title: COX_Statistical-scaling-datasets

description: This repository contains the simulated and pre-processed datasets used in the research manuscript titled PERCEPT: Replacing binary p-value thresholding with scaling for more nuanced identification of sample differences.

The details for any previously-published datasets used in this work are available via the Key Resources Table. Please refer to the manuscript for complete reference information.

Datasets

The datasets are provided in three broad categories:

- Dataset 1: simulated-data: Contains simulated image arrays and datasets for penalty factor optimisation.

- Dataset 2: omics: Contains pre-processed datasets for each of the six Omics studies analysed.

- Dataset 3: biomarkers: Contains individual datapoints extracted from each publication using an image digitisation tool.

Please refer to the manuscript for detailed information about the data generation and preprocessing steps. These datasets enable reproduction of the results presented in the manuscript via the corresponding code repository.
DOI: 10.5281/zenodo.8127984
title: COX_Statistical-scaling-datasets

description: This repository contains the simulated and pre-processed datasets used in the research manuscript titled PERCEPT: Replacing binary p-value thresholding with scaling for more nuanced identification of sample differences.

The details for any previously-published datasets used in this work are available via the Key Resources Table. Please refer to the manuscript for complete reference information.

Datasets

The datasets are provided in three broad categories:

- Dataset 1: simulated-data: Contains simulated image arrays and datasets for penalty factor optimisation.

- Dataset 2: omics: Contains pre-processed datasets for each of the six Omics studies analysed.

- Dataset 3: biomarkers: Contains individual datapoints extracted from each publication using an image digitisation tool.

Please refer to the manuscript for detailed information about the data generation and preprocessing steps. These datasets enable reproduction of the results presented in the manuscript via the corresponding code repository.
DOI: 10.34740/kaggle/dsv/7663817
title: COVID Vaccination in World (updated daily)
DOI: 10.6084/m9.figshare.12431975
title: GWAS

description: The Landrace data contains genomic data (pig.bed.gz, pig.bim.gz and pig.fam.gz) with 296 individuals used in the study and phenotypic data (pig_phenotype.txt.gz) of 4 feed efficiency related traits.
DOI: 10.6084/m9.figshare.19767802
title: Additional file 3 of Development pattern of ocular biometric parameters and refractive error in young Chinese adults: a longitudinal study of first-year university students

description: Additional file 3. Questionnaires results.
DOI: 10.6084/m9.figshare.19767805
title: Additional file 4 of Development pattern of ocular biometric parameters and refractive error in young Chinese adults: a longitudinal study of first-year university students

description: Additional file 4. Refraction results.
DOI: 10.6084/m9.figshare.19767805.v1
title: Additional file 4 of Development pattern of ocular biometric parameters and refractive error in young Chinese adults: a longitudinal study of first-year university students

description: Additional file 4. Refraction results.
DOI: 10.6084/m9.figshare.19767802.v1
title: Additional file 3 of Development pattern of ocular biometric parameters and refractive error in young Chinese adults: a longitudinal study of first-year university students

description: Additional file 3. Questionnaires results.
DOI: 10.6084/m9.figshare.19767796
title: Additional file 1 of Development pattern of ocular biometric parameters and refractive error in young Chinese adults: a longitudinal study of first-year university students

description: Additional file 1. Ocular biometry measurements results.
DOI: 10.6084/m9.figshare.19767860.v1
title: Additional file 2 of Decreased INPP5B expression predicts poor prognosis in lung adenocarcinoma

description: Additional file 2: Source data.
DOI: 10.6084/m9.figshare.19767860
title: Additional file 2 of Decreased INPP5B expression predicts poor prognosis in lung adenocarcinoma

description: Additional file 2: Source data.
DOI: 10.6084/m9.figshare.9810605
title: No genome-wide DNA methylation changes found associated with medium-term reduced graphene oxide exposure in human lung epithelial cells

description: The presence of nanomaterials in our everyday life is ever increasing, and so too are concerns about the possible health consequences of exposure to them. While evidence of their biological activity is growing, there is still scant knowledge of the epigenetic mechanisms that could be at play in these processes. Moreover, the great variability in the chemical and physical structures of these compounds handicaps the study of their possible health risks. Here we have synthesized reduced graphene oxide (rGO) through the thermal exfoliation/reduction of graphite oxide, and characterized the resulting material. We have then made use of Illumina’s MethylationEPIC arrays and bisulphite pyrosequencing to analyse the genome-wide and global DNA methylation dynamics associated with the medium-term exposure of human lung epithelial cells to rGO at concentrations of 1 and 10 µg/mL. The results show no genome-wide or global DNA methylation changes associated with either condition. Our observations thus suggest that medium-term rGO exposure does not have significant effects on the DNA methylation patterns of human lung epithelial cells.
DOI: 10.6084/m9.figshare.9810605.v2
title: No genome-wide DNA methylation changes found associated with medium-term reduced graphene oxide exposure in human lung epithelial cells

description: The presence of nanomaterials in our everyday life is ever increasing, and so too are concerns about the possible health consequences of exposure to them. While evidence of their biological activity is growing, there is still scant knowledge of the epigenetic mechanisms that could be at play in these processes. Moreover, the great variability in the chemical and physical structures of these compounds handicaps the study of their possible health risks. Here we have synthesized reduced graphene oxide (rGO) through the thermal exfoliation/reduction of graphite oxide, and characterized the resulting material. We have then made use of Illumina’s MethylationEPIC arrays and bisulphite pyrosequencing to analyse the genome-wide and global DNA methylation dynamics associated with the medium-term exposure of human lung epithelial cells to rGO at concentrations of 1 and 10 µg/mL. The results show no genome-wide or global DNA methylation changes associated with either condition. Our observations thus suggest that medium-term rGO exposure does not have significant effects on the DNA methylation patterns of human lung epithelial cells.
DOI: 10.6084/m9.figshare.9810605.v1
title: No genome-wide DNA methylation changes found associated with medium-term reduced graphene oxide exposure in human lung epithelial cells

description: The presence of nanomaterials in our everyday life is ever increasing, and so too are concerns about the possible health consequences of exposure to them. While evidence of their biological activity is growing, there is still scant knowledge of the epigenetic mechanisms that could be at play in these processes. Moreover, the great variability in the chemical and physical structures of these compounds handicaps the study of their possible health risks. Here we have synthesized reduced graphene oxide (rGO) through the thermal exfoliation/reduction of graphite oxide, and characterized the resulting material. We have then made use of Illumina’s MethylationEPIC arrays and bisulphite pyrosequencing to analyse the genome-wide and global DNA methylation dynamics associated with the medium-term exposure of human lung epithelial cells to rGO at concentrations of 1 and 10 µg/mL. The results show no genome-wide or global DNA methylation changes associated with either condition. Our observations thus suggest that medium-term rGO exposure does not have significant effects on the DNA methylation patterns of human lung epithelial cells.
DOI: 10.6084/m9.figshare.15047904
title: Additional file 10 of The lungs were on fire: a pilot study of 18F-FDG PET/CT in idiopathic-inflammatory-myopathy-related interstitial lung disease

description: Additional file 10. Dataset supporting the conclusions of this article
DOI: 10.34683/sr623
title: StoneRounds Case: SR623
title: MIDD

description: StoneRounds Case SR623 was diagnosed with MIDD likely caused by mutations in the gene: MT-TL1.
DOI: 10.6084/m9.figshare.19243585.v1
title: Geochronology and Sr-Nd-Pb-Hf isotopic geochemistry of middle-late Permian granitic and volcanic rocks within the eastern margin of the Khanka Massif: petrogenesis and implications for the tectonic nature

description: The Khanka Massif forms the easternmost part of the Central Asian Orogenic Belt (CAOB) and represents an ideal location for examination of the timing and processes involved in the transition from the Palaeo-Asian to Palaeo-Pacific Ocean tectonic systems. However, it is obstructed because the late Palaeozoic tectonic attributes of the eastern margin of this massif remain unclear. In this paper, we provide zircon U-Pb ages and Hf isotopic, as well as the whole-rock Sr-Nd-Pb-Hf isotopic data for Permian granitic and volcanic rocks within the eastern margin of the Khanka Massif, with the aim of exploring the petrogenesis and their geodynamics significance. These data suggest that the Permian magmatism within the eastern margin of the Khanka Massif, composed of monzogranites and rhyolites, can be split into two stages; i.e. middle (ca. 264 to ca. 263 Ma) and late (ca. 252 Ma) Permian. The highly fractionated middle Permian monzogranites are formed in an N-S extensional setting and represent the magmatic response to the amalgamation of the Khanka and Jiamusi massifs. Middle-late Permian rhyolites with decoupled Nd-Hf isotopic compositions were derived from partial melting of metasedimentary crustal rocks. Their moderate-high zircon saturation temperatures (796–817°C) are thought to represent the involvement of ridge subduction of the Palaeo-Asian Ocean beneath the western margin of the Khanka Massif. Our findings further reinforce the existence of the ridge subduction of the Palaeo-Asian Ocean at the western margin of Khanka Massif in the Permian, while excluding the possibility of Permian Palaeo-Pacific oceanic plate subduction occurred beneath the eastern margin of the Khanka Massif in the Permian.
DOI: 10.5281/zenodo.10657043
title: Frequency-specific and periodic masking of peripheral characters by delayed foveal input

description: The foveal-feedback mechanism supports peripheral object recognition by processing informationabout peripheral objects in foveal retinotopic visual cortex. When a foveal object is asynchronouslypresented with a peripheral target, peripheral discrimination performance is affected differentlydepending on the relationship between the foveal and peripheral objects. However, it is not clearwhether the delayed foveal input competes for foveal resources with the information processedby foveal-feedback or masks it. In the current study, we tested these hypotheses by measuring theeffect of foveal noise at different spatial frequencies on peripheral discrimination of familiar and novelcharacters. Our results showed that the impairment of foveal-feedback was strongest for low-spatialfrequency noise. A control experiment revealed that for spatially overlapping noise, low-spatialfrequencies were more effective than medium-spatial frequencies in the periphery, but vice versa inthe fovea. This suggests that the delayed foveal input selectively masks foveal-feedback when it issufficiently similar to the peripheral information. Additionally, this foveal masking was periodic asevidenced by behavioral oscillations at around 5 Hz. Thus, we conclude that foveal-feedback supportsperipheral discrimination of familiar and novel objects by periodically processing peripheral objectinformation.

 

DOI: https://doi.org/10.1038/s41598-024-51710-7
DOI: 10.5281/zenodo.10657044
title: Frequency-specific and periodic masking of peripheral characters by delayed foveal input

description: The foveal-feedback mechanism supports peripheral object recognition by processing informationabout peripheral objects in foveal retinotopic visual cortex. When a foveal object is asynchronouslypresented with a peripheral target, peripheral discrimination performance is affected differentlydepending on the relationship between the foveal and peripheral objects. However, it is not clearwhether the delayed foveal input competes for foveal resources with the information processedby foveal-feedback or masks it. In the current study, we tested these hypotheses by measuring theeffect of foveal noise at different spatial frequencies on peripheral discrimination of familiar and novelcharacters. Our results showed that the impairment of foveal-feedback was strongest for low-spatialfrequency noise. A control experiment revealed that for spatially overlapping noise, low-spatialfrequencies were more effective than medium-spatial frequencies in the periphery, but vice versa inthe fovea. This suggests that the delayed foveal input selectively masks foveal-feedback when it issufficiently similar to the peripheral information. Additionally, this foveal masking was periodic asevidenced by behavioral oscillations at around 5 Hz. Thus, we conclude that foveal-feedback supportsperipheral discrimination of familiar and novel objects by periodically processing peripheral objectinformation.

 

DOI: https://doi.org/10.1038/s41598-024-51710-7
DOI: 10.6084/m9.figshare.19767844
title: Additional file 2 of The progression rate of spinocerebellar ataxia type 3 varies with disease stage

description: Additional file 2. ICARS prediction based on expanded ATXN3 CAG repeat length, AOga and duration.
DOI: 10.6084/m9.figshare.19767847.v1
title: Additional file 3 of The progression rate of spinocerebellar ataxia type 3 varies with disease stage

description: Additional file 3. ICARS prediction based on expanded ATXN3 CAG repeat length and duration.
DOI: 10.6084/m9.figshare.15047904.v1
title: Additional file 10 of The lungs were on fire: a pilot study of 18F-FDG PET/CT in idiopathic-inflammatory-myopathy-related interstitial lung disease

description: Additional file 10. Dataset supporting the conclusions of this article
DOI: 10.25402/cer.16622242.v1
title: Supplementary Materials. A real-world cost-minimization analysis comparing the use of different endoscopic staplers in video-assisted thoracic surgery lobectomy procedures

description: Supplementary Table 1. Patient baseline characteristics between Type A and Type B groups.<br>Supplementary Table 2. Difference in costs between hypertensive and non-hypertensive patients.<br>
DOI: 10.6084/m9.figshare.20296632
title: Recent status of sesaminol and its glucosides: Synthesis, metabolism, and biological activities

description: <i>Sesamum indicum</i> is a major and important oilseed crop that is believed to promote human health in many countries, especially in China. Sesame seeds contain two types of lignans: lipid-soluble lignans and water-soluble glucosylated lignans. The major glucosylated lignans are sesaminol glucosides (SGs). So far, four sesaminol isomers and four SGs are identified. During the naturally occurring process of SGs production, sesaminol is generated first from two molecules of <i>E</i>-coniferyl alcohol, and then the sugar is added to the sesaminol one by one, leading to production of SGs. Sesaminol can be prepared from SGs, from sesamolin, and through artificial synthesis. SGs are metabolized in the liver and intestine and are then transported to other tissues. They exhibit several biological activities, most of which are based on their antioxidant and anti-inflammatory activities. In this paper, we present an overview of the current status of research on sesaminol and SGs. We have also discussed their synthesis, preparation, metabolism, and biological activities. It has been suggested that sesaminol and SGs are important biological substances with strong antioxidant properties in vitro and in vivo and are widely used in the food industry, medicine, and cosmetic products. The recovery and utilization of SGs from sesame seed cake after oil processing will generate massive economic benefits.
DOI: 10.6084/m9.figshare.20296632.v1
title: Recent status of sesaminol and its glucosides: Synthesis, metabolism, and biological activities

description: <i>Sesamum indicum</i> is a major and important oilseed crop that is believed to promote human health in many countries, especially in China. Sesame seeds contain two types of lignans: lipid-soluble lignans and water-soluble glucosylated lignans. The major glucosylated lignans are sesaminol glucosides (SGs). So far, four sesaminol isomers and four SGs are identified. During the naturally occurring process of SGs production, sesaminol is generated first from two molecules of <i>E</i>-coniferyl alcohol, and then the sugar is added to the sesaminol one by one, leading to production of SGs. Sesaminol can be prepared from SGs, from sesamolin, and through artificial synthesis. SGs are metabolized in the liver and intestine and are then transported to other tissues. They exhibit several biological activities, most of which are based on their antioxidant and anti-inflammatory activities. In this paper, we present an overview of the current status of research on sesaminol and SGs. We have also discussed their synthesis, preparation, metabolism, and biological activities. It has been suggested that sesaminol and SGs are important biological substances with strong antioxidant properties in vitro and in vivo and are widely used in the food industry, medicine, and cosmetic products. The recovery and utilization of SGs from sesame seed cake after oil processing will generate massive economic benefits.