cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tve2eq
title: Occurrence Download

description: A dataset containing 156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Grateloupia turuturu",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 156 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007919-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/xjygb-3sr02
title: JV9082_Janelia42k

description: DotF-sfGFP fusion
description: <strong>Tilt Series Date:</strong> 2018-08-29</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected and processed by Debnath Ghosal. Janelia Krios.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AYE liquid culture with following supplements: ferric nitrate, cysteine hydrochloride and thymidine.</p>
<strong>Sample Preparation:</strong> 6 grids were frozen for the JV9082 strain (2x concentrated culture); Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-258/rawdata/</p>JV9082_20180901a0032.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-258/rawdata/JV9082_20180901a0032.mrc"
        > <i class="download icon"></i> Download </a></p>

        JV9082_20180901a0032_full.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-258/3dimage_96929/JV9082_20180901a0032_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16927463
title: Steady-State Radiative Intensity

description: Dataset for training, validating and testing surrogate models for the simulation of the steady-state equilibrium of radiative intensity.
DOI: 10.5281/zenodo.16927464
title: Steady-State Radiative Intensity

description: Dataset for training, validating and testing surrogate models for the simulation of the steady-state equilibrium of radiative intensity.
DOI: 10.22002/4r8a0-86e76
title: P_aeruginosa_PA14_DfliF_Krios

description: Raw data files of P_aeruginosa_PA14_DfliF_Krios
description: <strong>Tilt Series Date:</strong> 2018-09-29</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (50.0°, -50.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -9.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> RAPTOR</p>
<strong>Collaborators and Roles:</strong> I (mohammed) obtained the cells from Shannon Park (Dianne Newman lab). The cells are available in their library of Pseudomonas aeruginosa PA14.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> I inoculated one colony from an LB agar plate and grew the cells overnight in LB with 100 ug/ml of Gentamycin. Then I concentrated the cells three times and mixed them with gold nanoparticles and added 3 ul on to thick carbon R2 grids and blotted them and plunge froze them (force either 6 or 3, time either 3 or 2 seconds respectively, drain time 1 second).</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-09-29-14/rawdata/</p>Pseudomonas_DfliF10.mrc,  Tilt Series (Pixel Size 0.53 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-09-29-14/rawdata/Pseudomonas_DfliF10.mrc"
        > <i class="download icon"></i> Download </a></p>

        Pseudomonas_DfliF10_full.rec,  Reconstruction (Pixel Size 2.12 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-09-29-14/3dimage_97152/Pseudomonas_DfliF10_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.v5upxb
title: Occurrence Download

description: A dataset containing 228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Grateloupia turuturu",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 228 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007918-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/hsb0f-0tq84
title: Hpylori_dFliF_FISE

description: These are H_pylori cells that are lacking FliP protein. In these cells, FliF protein was knocked out  .  to examine its relation to the hat-like complex.
description: <strong>Tilt Series Date:</strong> 2020-10-08</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Helicobacter pylori</p>
<strong>Strain:</strong> 26695</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -8.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> The cells were prepared and sent by Carrie Schaffer from the university of Kentucky. The cells were grown at 37C with 5% CO2 on sheep blood agar plates for 2 days from a -80C. No growth was seen . on the plates after 24 hr therefore the plates were kept in the . incubator for another 24Hr.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The samples were prepared with Vitrobot IV. Blotting conditions were either: blot force 6, blot . time 3, drain time 1 OR blot force -3, blot time 4, drain time 1, 100%  humidity. Cu grids. 10 nm . gold</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-10-08-275/rawdata/</p>Hpylori_DFliF_FISE_270.mrc,  Tilt Series (Pixel Size 0.452 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-10-08-275/rawdata/Hpylori_DFliF_FISE_270.mrc"
        > <i class="download icon"></i> Download </a></p>

        Hpylori_DFliF_FISE_270_full.rec,  Reconstruction (Pixel Size 1.808 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-10-08-275/3dimage_114027/Hpylori_DFliF_FISE_270_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9jz5x-mr357
title: JV9082_Janelia42k

description: DotF-sfGFP fusion
description: <strong>Tilt Series Date:</strong> 2018-08-29</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected and processed by Debnath Ghosal. Janelia Krios.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AYE liquid culture with following supplements: ferric nitrate, cysteine hydrochloride and thymidine.</p>
<strong>Sample Preparation:</strong> 6 grids were frozen for the JV9082 strain (2x concentrated culture); Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-126/rawdata/</p>JV9082_201808290151.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-126/rawdata/JV9082_201808290151.mrc"
        > <i class="download icon"></i> Download </a></p>

        JV9082_201808290151_part37_8.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-126/3dimage_96613/JV9082_201808290151_part37_8.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.18112/openneuro.ds006395.v1.0.5
title: Upper limb dystonia, cervical dystonia and healthy controls dataset
DOI: 10.15468/dl.w5uwf4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Copadichromis diplostigma, Copadichromis geertsi, Copadichromis ilesi, Copadichromis insularis, Copadichromis jacksoni, Copadichromis likomae, Copadichromis mbenjii, Copadichromis melas, Copadichromis mloto, Copadichromis nkatae, Copadichromis parvus, Copadichromis pleurostigma, Copadichromis pleurostigmoides, Copadichromis quadrimaculatus, Copadichromis trewavasae, Copadichromis trimaculatus, Copadichromis verduyni, Copadichromis virginalis, Coptodon bakossiorum, Coptodon bemini, Coptodon bythobates, Coptodon cameronensis, Coptodon camerunensis, Coptodon coffea, Coptodon congica, Coptodon dageti, Coptodon deckerti, Coptodon discolor, Coptodon ejagham, Coptodon flava, Coptodon fusiforme, Coptodon guineensis, Coptodon gutturosa, Coptodon imbriferna, Coptodon ismailiaensis, Coptodon kottae, Coptodon louka, Coptodon margaritacea, Coptodon nigrans, Coptodon nyongana, Coptodon rendalli, Coptodon rheophila, Coptodon snyderae, Coptodon spongotroktis, Coptodon tholloni, Coptodon thysi, Coptodon walteri, Coptodon zillii, Coptostomabarbus bellcrossi, Coptostomabarbus wittei, Corematodus shiranus, Corematodus taeniatus, Coryogalops william, Cotylopus acutipinnis, Cotylopus rubripinnis, Crenimugil buchanani, Crenimugil crenilabis, Crenimugil seheli, Cromeria nilotica, Cromeria occidentalis, Ctenochromis horei, Ctenochromis luluae, Ctenochromis oligacanthus, Ctenochromis polli, Ctenogobius lepturus, Ctenopharyngodon idella, Ctenopharynx intermedius, Ctenopharynx nitidus, Ctenopharynx pictus, Ctenopoma acutirostre, Ctenopoma ashbysmithi, Ctenopoma kingsleyae, Ctenopoma machadoi, Ctenopoma multispine, Ctenopoma maculatum, Ctenopoma muriei, Ctenopoma nebulosum, Ctenopoma nigropannosum, Ctenopoma ocellatum, Ctenopoma petherici, Ctenopoma weeksii, Cunningtonia longiventralis, Cyathochromis obliquidens, Cyathopharynx furcifer, Cyclopharynx fwae, Cyclopharynx schwetzi, Cynotilapia afra, Cynotilapia aurifrons, Cynotilapia axelrodi, Cynotilapia chilundu, Cynotilapia pulpican, Cynotilapia zebroides, Microchromis zebroides, Cyphomyrus discorhynchus, Cyphomyrus macrops, Hippopotamyrus macrops, Cyphomyrus psittacus, Hippopotamyrus psittacus, Cyphomyrus wilverthi, Hippopotamyrus wilverthi)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-17.0425 19.3358,-16.8618 19.0648,-16.8618 20.0599,-16.9237 20.0599,-17.0425 19.3358))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007921-250827131500795/datasets/export for details.
DOI: 10.22002/9bkhh-2zq58
title: P_aeruginosa_PA14_DfliF_Krios

description: Raw data files of P_aeruginosa_PA14_DfliF_Krios
description: <strong>Tilt Series Date:</strong> 2018-09-29</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (50.0°, -50.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -9.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> RAPTOR</p>
<strong>Collaborators and Roles:</strong> I (mohammed) obtained the cells from Shannon Park (Dianne Newman lab). The cells are available in their library of Pseudomonas aeruginosa PA14.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> I inoculated one colony from an LB agar plate and grew the cells overnight in LB with 100 ug/ml of Gentamycin. Then I concentrated the cells three times and mixed them with gold nanoparticles and added 3 ul on to thick carbon R2 grids and blotted them and plunge froze them (force either 6 or 3, time either 3 or 2 seconds respectively, drain time 1 second).</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-09-29-75/rawdata/</p>Pseudomonas_DfliF8.mrc,  Tilt Series (Pixel Size 0.53 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-09-29-75/rawdata/Pseudomonas_DfliF8.mrc"
        > <i class="download icon"></i> Download </a></p>

        Pseudomonas_DfliF8_part61_3.rec,  Reconstruction (Pixel Size 2.12 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-09-29-75/3dimage_97267/Pseudomonas_DfliF8_part61_3.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dnfnt-e9w34
title: JV9082_K3_janelia

description: JV9082:DotF-sfGFP fusion
description: <strong>Tilt Series Date:</strong> 2019-12-02</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3.0°, constant angular increment, dosage: 90.0 eV/Å²,  defocus: -2.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected and processed by Debnath Ghosal.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AYE liquid culture with following supplements: ferric nitrate, cysteine hydrochloride and thymidine.</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Data collected at Janelia Krios (K3 camera). Mag: 26000, pixel size: 2.61A. Defocus range -2 to -4 um.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-12-02-95/rawdata/</p>9082_Box1_No1_S85.mrc,  Tilt Series (Pixel Size 0.261 nm), 707.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-12-02-95/rawdata/9082_Box1_No1_S85.mrc"
        > <i class="download icon"></i> Download </a></p>

        9082_Box1_No1_S85.rec,  Reconstruction (Pixel Size 1.044 nm), 1.5 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-12-02-95/3dimage_112770/9082_Box1_No1_S85.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16928551
title: Temporal Evolution of Radiative Intensity

description: Dataset for training, validating and testing surrogate models for the simulation of the temporal evolution of radiative intensity.
DOI: 10.5281/zenodo.16928552
title: Temporal Evolution of Radiative Intensity

description: Dataset for training, validating and testing surrogate models for the simulation of the temporal evolution of radiative intensity.
DOI: 10.22002/0mmj0-czw88
title: JV9082_Janelia42k

description: DotF-sfGFP fusion
description: <strong>Tilt Series Date:</strong> 2018-08-29</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected and processed by Debnath Ghosal. Janelia Krios.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AYE liquid culture with following supplements: ferric nitrate, cysteine hydrochloride and thymidine.</p>
<strong>Sample Preparation:</strong> 6 grids were frozen for the JV9082 strain (2x concentrated culture); Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-393/rawdata/</p>JV9082_20180901a0167.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-393/rawdata/JV9082_20180901a0167.mrc"
        > <i class="download icon"></i> Download </a></p>

        JV9082_20180901a0167_full.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-393/3dimage_97098/JV9082_20180901a0167_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16997704
title: CODEX AnnData, nuclei and fiber masks of CODEX images

description: This folder contains the masks generated after segmentation of single nuclei or fibers in CODEX images.

The folder also contains the AnnData file with analyses of nuclei-type and cell-type identity and neighborhoods, as well as all the markers imaged in the CODEX panel.
DOI: 10.5281/zenodo.16997705
title: CODEX AnnData, nuclei and fiber masks of CODEX images

description: This folder contains the masks generated after segmentation of single nuclei or fibers in CODEX images.

The folder also contains the AnnData file with analyses of nuclei-type and cell-type identity and neighborhoods, as well as all the markers imaged in the CODEX panel.
DOI: 10.22002/642js-wy797
title: MEF cells - Dynamin2 knockdown

description: Dynamin2 knocked down with retroviral delivery of shRNA to study mitochondrial division. grid info - DG2_grid1.
description: <strong>Tilt Series Date:</strong> 2018-11-27</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> MEF cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -8.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD, tomo3D</p>
<strong>Collaborators and Roles:</strong> Chun Shik from Chan lab helped design shRNA and provided protocols for viral transduction into Chan lab's MEF cells. Shrawan and Danielle made the cell line. Shrawan FIB-milled and performed ECT.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown on R2/2 quantifoil gold grids treated with 0.1 mg/mL fibronectin (10min)</p>
<strong>Sample Preparation:</strong> Cells were treated with 10 µM FCCP, plunge frozen and FIB-milled.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-11-27-4/rawdata/</p>TS3.mrc,  Tilt Series (Pixel Size 0.432 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-11-27-4/rawdata/TS3.mrc"
        > <i class="download icon"></i> Download </a></p>

        TS3_4bin_SIRTl20_rotx.rec,  Reconstruction (Pixel Size 0.0 nm), 890.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-11-27-4/3dimage_102036/TS3_4bin_SIRTl20_rotx.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.8zscjk
title: Occurrence Download

description: A dataset containing 12396127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 12396127 records from 2165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007874-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/k1xxjb/294iw9
title: Africa Biocarbon Database.xls
DOI: 10.17632/5hgvztfc5p.1
title: Data for: Upper ocean oxygenation, evolution of Rubisco and the Phanerozoic succession of Phytoplankton; compilation of biochemical properties of Rubisco

description: Compilation of Specificity, affinity for carbon dioxide (Kc), affinity for oxygen (Ko), turnover rate of carbon dioxide (kcatc), turnover rate of oxygen (kcato) for a range of organisms hosting Form I and Form II Rubiscos with references for original data
DOI: 10.7910/dvn/oc35yc/gokipk
title: BL_thanacodes.tab
DOI: 10.17036/researchdata.aston.ac.uk.00000426
title: Online Data for: Epitope mapping and characterization of 4-hydroxy-2-nonenal modified-human serum albumin using two different polyclonal antibodies
DOI: 10.7910/dvn/nfzli3/grpfw1
title: 2.KURUKKALPATTU.txt
DOI: 10.7910/dvn/nfzli3/nsyjhe
title: 1. PALLIPUTHUPATTU - SG.txt
DOI: 10.7910/dvn/nfzli3/6xnxfz
title: 6. POTTIREDDIPATTI - SS.txt
DOI: 10.7910/dvn/nfzli3/aizxrp
title: 9. MATHUR - SG.txt
DOI: 10.7910/dvn/nfzli3/dhauzg
title: 5. KALKULAM - SG.txt