cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4906874
title: RNA-seq raw data of MS-N_1_1

description: File 1 of
RNA-seq raw data of N48-2 biological replicate 1 spikelets at mononuclear
stage. Paired-end sequencing strategy was applied on the Illumina HiSeq 4000
sequencing platform.
DOI: 10.6084/m9.figshare.4906961
title: RNA-seq raw data of MS-N_2_2

description: File 2 of
RNA-seq raw data of N48-2 biological replicate 2 spikelets at mononuclear
stage. Paired-end sequencing strategy was applied on the Illumina HiSeq 4000
sequencing platform.
DOI: 10.6084/m9.figshare.4906961.v1
title: RNA-seq raw data of MS-N_2_2

description: File 2 of
RNA-seq raw data of N48-2 biological replicate 2 spikelets at mononuclear
stage. Paired-end sequencing strategy was applied on the Illumina HiSeq 4000
sequencing platform.
DOI: 10.6084/m9.figshare.4906964
title: RNA-seq raw data of MS-N_2_1

description: File 1 of
RNA-seq raw data of N48-2 biological replicate 2 spikelets at mononuclear
stage. Paired-end sequencing strategy was applied on the Illumina HiSeq 4000
sequencing platform.
DOI: 10.6084/m9.figshare.4906964.v1
title: RNA-seq raw data of MS-N_2_1

description: File 1 of
RNA-seq raw data of N48-2 biological replicate 2 spikelets at mononuclear
stage. Paired-end sequencing strategy was applied on the Illumina HiSeq 4000
sequencing platform.
DOI: 10.6084/m9.figshare.4906994
title: RNA-seq raw data of MS-N_3_1

description: File 1 of
RNA-seq raw data of N48-2 biological replicate 3 spikelets at mononuclear
stage. Paired-end sequencing strategy was applied on the Illumina HiSeq 4000
sequencing platform.
DOI: 10.6084/m9.figshare.4906994.v1
title: RNA-seq raw data of MS-N_3_1

description: File 1 of
RNA-seq raw data of N48-2 biological replicate 3 spikelets at mononuclear
stage. Paired-end sequencing strategy was applied on the Illumina HiSeq 4000
sequencing platform.
DOI: 10.6084/m9.figshare.4907006
title: RNA-seq raw data of MS-N_3_2

description: File 2 of RNA-seq raw data of N48-2 biological replicate 3
spikelets at mononuclear stage. Paired-end sequencing strategy was applied on
the Illumina HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4907159
title: RNA-seq raw data of PS-N_1_2

description: File 2 of RNA-seq raw data of N48-2 biological replicate 1 spikelets at pollen mother cell stage. Paired-end sequencing strategy was applied on the Illumina HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4907159.v1
title: RNA-seq raw data of PS-N_1_2

description: File 2 of RNA-seq raw data of N48-2 biological replicate 1 spikelets at pollen mother cell stage. Paired-end sequencing strategy was applied on the Illumina HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4907162
title: RNA-seq raw data of PS-N_1_1

description: File 1 of RNA-seq raw data of
N48-2 biological replicate 1 spikelets at pollen mother cell stage. Paired-end sequencing
strategy was applied on the Illumina HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4907174
title: RNA-seq raw data of PS-N_2_2

description: File 2 of
RNA-seq raw data of N48-2 biological replicate 2 spikelets at pollen mother cell stage. Paired-end sequencing strategy was applied on the Illumina HiSeq 4000
sequencing platform.
DOI: 10.6084/m9.figshare.4907174.v1
title: RNA-seq raw data of PS-N_2_2

description: File 2 of
RNA-seq raw data of N48-2 biological replicate 2 spikelets at pollen mother cell stage. Paired-end sequencing strategy was applied on the Illumina HiSeq 4000
sequencing platform.
DOI: 10.6084/m9.figshare.4907345
title: RNA-seq raw data of PS-N_3_1

description: File
1 of RNA-seq raw data of N48-2 biological replicate 3 spikelets at pollen mother cell stage.
Paired-end sequencing strategy was applied on the Illumina HiSeq 4000
sequencing platform.
DOI: 10.6084/m9.figshare.4907345.v1
title: RNA-seq raw data of PS-N_3_1

description: File
1 of RNA-seq raw data of N48-2 biological replicate 3 spikelets at pollen mother cell stage.
Paired-end sequencing strategy was applied on the Illumina HiSeq 4000
sequencing platform.
DOI: 10.6084/m9.figshare.4907348
title: RNA-seq raw data of PS-N_3_2

description: File 2 of RNA-seq raw data of
N48-2 biological replicate 3 spikelets at pollen mother cell stage. Paired-end sequencing
strategy was applied on the Illumina HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4907921
title: RNA-seq raw data of MS-C_1_2

description: File 2 of RNA-seq raw data of C48-2 biological replicate 1 spikelets at mononuclear stage. Paired-end sequencing strategy was applied on the Illumina HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4907921.v1
title: RNA-seq raw data of MS-C_1_2

description: File 2 of RNA-seq raw data of C48-2 biological replicate 1 spikelets at mononuclear stage. Paired-end sequencing strategy was applied on the Illumina HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4907939
title: RNA-seq raw data of MS-C_2_2

description: File 2 of RNA-seq raw data of C48-2 biological replicate 2
spikelets at mononuclear stage. Paired-end sequencing strategy was applied on
the Illumina HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4907939.v1
title: RNA-seq raw data of MS-C_2_2

description: File 2 of RNA-seq raw data of C48-2 biological replicate 2
spikelets at mononuclear stage. Paired-end sequencing strategy was applied on
the Illumina HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4909289
title: RNA-seq raw data of MS-C_3_1

description: File 1 of RNA-seq raw data of C48-2 biological replicate 3
spikelets at mononuclear stage. Paired-end sequencing strategy was applied on
the Illumina HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4909289.v1
title: RNA-seq raw data of MS-C_3_1

description: File 1 of RNA-seq raw data of C48-2 biological replicate 3
spikelets at mononuclear stage. Paired-end sequencing strategy was applied on
the Illumina HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4909292
title: RNA-seq raw data of MS-C_3_2

description: File 2 of RNA-seq raw data of C48-2 biological replicate 3 spikelets at mononuclear stage. Paired-end sequencing strategy was applied on
the Illumina HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4909292.v1
title: RNA-seq raw data of MS-C_3_2

description: File 2 of RNA-seq raw data of C48-2 biological replicate 3 spikelets at mononuclear stage. Paired-end sequencing strategy was applied on
the Illumina HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4909301
title: RNA-seq raw data of PS-C_1_1

description: File 1 of RNA-seq raw data of C48-2 biological replicate 1 spikelets at pollen
mother cell stage. Paired-end sequencing strategy was applied on the Illumina
HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4909304
title: RNA-seq raw data of PS-C_2_1

description: File 1 of RNA-seq raw data of
C48-2 biological replicate 2 spikelets at pollen mother cell stage. Paired-end
sequencing strategy was applied on the Illumina HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4909307
title: RNA-seq raw data of PS-C_2_2

description: File 2 of RNA-seq raw data of
C48-2 biological replicate 2 spikelets at pollen mother cell stage. Paired-end
sequencing strategy was applied on the Illumina HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4909307.v1
title: RNA-seq raw data of PS-C_2_2

description: File 2 of RNA-seq raw data of
C48-2 biological replicate 2 spikelets at pollen mother cell stage. Paired-end
sequencing strategy was applied on the Illumina HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4909331
title: RNA-seq raw data of PS-C_3_1

description: File 1 of
RNA-seq raw data of C48-2 biological replicate 3 spikelets at pollen mother
cell stage. Paired-end sequencing strategy was applied on the Illumina HiSeq
4000 sequencing platform.
DOI: 10.6084/m9.figshare.4909331.v1
title: RNA-seq raw data of PS-C_3_1

description: File 1 of
RNA-seq raw data of C48-2 biological replicate 3 spikelets at pollen mother
cell stage. Paired-end sequencing strategy was applied on the Illumina HiSeq
4000 sequencing platform.
DOI: 10.6084/m9.figshare.4909337
title: RNA-seq raw data of PS-C_3_2

description: File
2 of RNA-seq raw data of C48-2 biological replicate 3 spikelets at pollen
mother cell stage. Paired-end sequencing strategy was applied on the Illumina
HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4909361
title: The emergence of noncoding RNAs as Heracles in autophagy

description: Macroautophagy/autophagy is a catabolic process that is widely found in nature. Over the past few decades, mounting evidence has indicated that noncoding RNAs, ranging from small noncoding RNAs to long noncoding RNAs (lncRNAs) and even circular RNAs (circRNAs), mediate the transcriptional and post-transcriptional regulation of autophagy-related genes by participating in autophagy regulatory networks. The differential expression of noncoding RNAs affects autophagy levels at different physiological and pathological stages, including embryonic proliferation and differentiation, cellular senescence, and even diseases such as cancer. We summarize the current knowledge regarding noncoding RNA dysregulation in autophagy and investigate the molecular regulatory mechanisms underlying noncoding RNA involvement in autophagy regulatory networks. Then, we integrate public resources to predict autophagy-related noncoding RNAs across species and discuss strategies for and the challenges of identifying autophagy-related noncoding RNAs. This article will deepen our understanding of the relationship between noncoding RNAs and autophagy, and provide new insights to specifically target noncoding RNAs in autophagy-associated therapeutic strategies.
DOI: 10.6084/m9.figshare.4909361.v1
title: The Emergence of Noncoding RNAs as Heracles in Autophagy

description: Macroautophagy/autophagy is a catabolic process that is widely found in nature. Over the past few decades, mounting evidence has indicated that noncoding RNAs, ranging from small noncoding RNAs to long noncoding RNAs (lncRNAs) and even circular RNAs (circRNAs), mediate the transcriptional and post-transcriptional regulation of autophagy-related genes by participating in autophagy regulatory networks. The differential expression of noncoding RNAs affects autophagy levels at different physiological and pathological stages, including embryonic proliferation and differentiation, cellular senescence, and even diseases such as cancer. We summarize the current knowledge regarding noncoding RNA dysregulation in autophagy and investigate the molecular regulatory mechanisms underlying noncoding RNA involvement in autophagy regulatory networks. Then, we integrate public resources to predict autophagy-related noncoding RNAs across species and discuss strategies for and the challenges of identifying autophagy-related noncoding RNAs. This article will deepen our understanding of the relationship between noncoding RNAs and autophagy, and provide new insights to specifically target noncoding RNAs in autophagy-associated therapeutic strategies.
DOI: 10.6084/m9.figshare.4909361.v2
title: The emergence of noncoding RNAs as Heracles in autophagy

description: Macroautophagy/autophagy is a catabolic process that is widely found in nature. Over the past few decades, mounting evidence has indicated that noncoding RNAs, ranging from small noncoding RNAs to long noncoding RNAs (lncRNAs) and even circular RNAs (circRNAs), mediate the transcriptional and post-transcriptional regulation of autophagy-related genes by participating in autophagy regulatory networks. The differential expression of noncoding RNAs affects autophagy levels at different physiological and pathological stages, including embryonic proliferation and differentiation, cellular senescence, and even diseases such as cancer. We summarize the current knowledge regarding noncoding RNA dysregulation in autophagy and investigate the molecular regulatory mechanisms underlying noncoding RNA involvement in autophagy regulatory networks. Then, we integrate public resources to predict autophagy-related noncoding RNAs across species and discuss strategies for and the challenges of identifying autophagy-related noncoding RNAs. This article will deepen our understanding of the relationship between noncoding RNAs and autophagy, and provide new insights to specifically target noncoding RNAs in autophagy-associated therapeutic strategies.
DOI: 10.6084/m9.figshare.4909505
title: RNA-seq raw data of PS-C_1_2

description: File
2 of RNA-seq raw data of C48-2 biological replicate 1 spikelets at pollen
mother cell stage. Paired-end sequencing strategy was applied on the Illumina
HiSeq 4000 sequencing platform.
DOI: 10.6084/m9.figshare.4910519
title: DASHMM Strong Scaling on Cori

description: A strong scaling test of the DASHMM library on the Cori supercomputer. The data plotted is the average of five repetitions of the evaluation times for three different kernels for two different source and target distributions. The left panel in the absolute time for the evaluation in second as a function of the number of nodes used (Cori has 32 core nodes). The right panel is the speedup relative to a single node of Cori. Shown in blue, yellow and red are the data for the Laplace, Yukawa and Helmholtz potentials, respectively. Lines with square markers used sources and targets distributed in a cube, and lines with circular markers are for runs that used sources and targets on the surface of a sphere.
DOI: 10.6084/m9.figshare.4910519.v1
title: DASHMM Strong Scaling on Cori

description: A strong scaling test of the DASHMM library on the Cori supercomputer. The data plotted is the average of five repetitions of the evaluation times for three different kernels for two different source and target distributions. The left panel in the absolute time for the evaluation in second as a function of the number of nodes used (Cori has 32 core nodes). The right panel is the speedup relative to a single node of Cori. Shown in blue, yellow and red are the data for the Laplace, Yukawa and Helmholtz potentials, respectively. Lines with square markers used sources and targets distributed in a cube, and lines with circular markers are for runs that used sources and targets on the surface of a sphere.
DOI: 10.5281/zenodo.10777436
title: Multidirectional Effects of Red Clover (Trifolium pratense L.) in Support of Menopause Therapy

description: Data includes source data and the publication to which it is related
DOI: 10.5281/zenodo.10777437
title: Multidirectional Effects of Red Clover (Trifolium pratense L.) in Support of Menopause Therapy

description: Data includes source data and the publication to which it is related
DOI: 10.6084/m9.figshare.4928792
title: Long-Term Fine-Grained Sediment Records in a Drainage System in Arid China: A New Perspective from Paleo-Climatological Records and Simulations

description: Atmospheric particulate matter (PM 2.5 and PM 10) can adversely affect human health and also has impacts on climate and precipitation. Much research has been done on the transport of human-made fine-grained matter in modern times. It is still unclear, though, what controls the transport process of fine-grained sediment from natural sources on the millennial scale. In this study, we present Holocene basin-wide fine-grained sediment records from the Shiyang River drainage basin system in arid China. Six Holocene sedimentary sequences were collected from various geomorphological units of the drainage system. A total of 1,043 sediment samples were obtained for analysis of fine-grained sediment; fifty-eight radiocarbon dates were acquired for establishing the geochronological frames. In addition, we synthesized the results from transient paleo-climate simulations to understand environmental backgrounds of the Holocene. Our records and simulations indicated that fine-grained sediment 2.5 μm content was relatively stable and less affected by monsoon intensities and circulations. Millennial-scale fine-grained sediment 10 μm content varied according to sedimentary facies, and it was negatively correlated with the winter monsoon intensity at eolian sediments. The fine-grained sediment 10 μm content increases dramatically at lacustrine layers in lake and alluvial sediments from the middle and lower drainage basin, showing its relationship with long-term moisture conditions that are closely related to monsoon precipitation based on climate simulations. This finding contributes to our understanding of the fine-grained matter trends against the backdrop of global warming.
DOI: 10.6084/m9.figshare.4928792.v1
title: Long-Term Fine-Grained Sediment Records in a Drainage System in Arid China: A New Perspective from Paleo-Climatological Records and Simulations

description: Atmospheric particulate matter (PM 2.5 and PM 10) can adversely affect human health and also has impacts on climate and precipitation. Much research has been done on the transport of human-made fine-grained matter in modern times. It is still unclear, though, what controls the transport process of fine-grained sediment from natural sources on the millennial scale. In this study, we present Holocene basin-wide fine-grained sediment records from the Shiyang River drainage basin system in arid China. Six Holocene sedimentary sequences were collected from various geomorphological units of the drainage system. A total of 1,043 sediment samples were obtained for analysis of fine-grained sediment; fifty-eight radiocarbon dates were acquired for establishing the geochronological frames. In addition, we synthesized the results from transient paleo-climate simulations to understand environmental backgrounds of the Holocene. Our records and simulations indicated that fine-grained sediment 2.5 μm content was relatively stable and less affected by monsoon intensities and circulations. Millennial-scale fine-grained sediment 10 μm content varied according to sedimentary facies, and it was negatively correlated with the winter monsoon intensity at eolian sediments. The fine-grained sediment 10 μm content increases dramatically at lacustrine layers in lake and alluvial sediments from the middle and lower drainage basin, showing its relationship with long-term moisture conditions that are closely related to monsoon precipitation based on climate simulations. This finding contributes to our understanding of the fine-grained matter trends against the backdrop of global warming.
DOI: 10.6084/m9.figshare.4955708
title: Unique sequence from each membane sample with read number counts.fastq

description: Characterisation
and comparison of bacterial communities on reverse osmosis membranes of a full-scale
desalination plant by bacterial 16S rRNA gene metabarcoding.
DOI: 10.6084/m9.figshare.4955708.v1
title: Unique sequence from each membane sample with read number counts.fastq

description: Characterisation
and comparison of bacterial communities on reverse osmosis membranes of a full-scale
desalination plant by bacterial 16S rRNA gene metabarcoding.
DOI: 10.6084/m9.figshare.4964462
title: Space-time distribution of manganese ore deposits along the southern margin of the South China Block, in the context of Palaeo-Tethyan evolution

description: The evolution of the Palaeo-Tethys Ocean played an important role in the Palaeozoic tectono-metallogenesis in Southeast Asia, in which diverse blocks amalgamated due to its closure. Previous researches focused mostly on endogenic metallogenesis related to the evolution of the Palaeo-Tethys Ocean. However, the tectonic control on the numerous Mn ore deposits in the southwestern South China Block (SCB) developed during Palaeo-Tethys evolution is largely unknown. In this article, we review Palaeo-Tethys evolution and define its four evolutionary stages from initial opening, maturity, incipient subduction, to post-closure. This study further investigated the geology and palaeogeography of Mn ore deposits in Upper Devonian, lower Carboniferous, middle Permian, and Lower-Middle Triassic formations in the southwestern SCB. We show that each of the four Mn metallogenic episodes was a response to each of the four evolutionary stages of the Palaeo-Tethys Ocean. Wall rocks of orebodies transitioned from chert-mudstone-carbonate in the Devonian, Carboniferous, and Permian to siltstone-mudstone in Lower-Middle Triassic. The ores of the four episodes of Mn mineralization are composed primarily of rhodochrosite, manganocalcite, and rhodonite. The carbonate C–O isotope and ore trace element composition data suggest that ore-forming fluids were dominated by seafloor water with involvement of magmatic hydrothermal fluids and organic matter as well. Palaeogeography reconstructions indicate the Mn-ore deposits formed along the margins or in the centre of the abyssal basins. Despite the diverse tectonic settings of the four Mn mineralization episodes, it is proposed that the crustal sagging, restricted seafloor environment, and hydrothermal activities that occurred in the southwestern margin of SCB contributed to Mn mineralization.
DOI: 10.6084/m9.figshare.4964462.v1
title: Space-time distribution of manganese ore deposits along the southern margin of the South China Block, in the context of Palaeo-Tethyan evolution

description: The evolution of the Palaeo-Tethys Ocean played an important role in the Palaeozoic tectono-metallogenesis in Southeast Asia, in which diverse blocks amalgamated due to its closure. Previous researches focused mostly on endogenic metallogenesis related to the evolution of the Palaeo-Tethys Ocean. However, the tectonic control on the numerous Mn ore deposits in the southwestern South China Block (SCB) developed during Palaeo-Tethys evolution is largely unknown. In this article, we review Palaeo-Tethys evolution and define its four evolutionary stages from initial opening, maturity, incipient subduction, to post-closure. This study further investigated the geology and palaeogeography of Mn ore deposits in Upper Devonian, lower Carboniferous, middle Permian, and Lower-Middle Triassic formations in the southwestern SCB. We show that each of the four Mn metallogenic episodes was a response to each of the four evolutionary stages of the Palaeo-Tethys Ocean. Wall rocks of orebodies transitioned from chert-mudstone-carbonate in the Devonian, Carboniferous, and Permian to siltstone-mudstone in Lower-Middle Triassic. The ores of the four episodes of Mn mineralization are composed primarily of rhodochrosite, manganocalcite, and rhodonite. The carbonate C–O isotope and ore trace element composition data suggest that ore-forming fluids were dominated by seafloor water with involvement of magmatic hydrothermal fluids and organic matter as well. Palaeogeography reconstructions indicate the Mn-ore deposits formed along the margins or in the centre of the abyssal basins. Despite the diverse tectonic settings of the four Mn mineralization episodes, it is proposed that the crustal sagging, restricted seafloor environment, and hydrothermal activities that occurred in the southwestern margin of SCB contributed to Mn mineralization.