cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bckdc4
title: Occurrence Download

description: A dataset containing 2346 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Atriplex longipes Drejer & Fr."
 ]
}

 The dataset includes 2346 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047961-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7by4xj
title: Occurrence Download

description: A dataset containing 36696 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Croatia",
 {
 "or" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "DatasetKey is naturgucker",
 "DatasetKey is Naturalis Biodiversity Center (NL) - Botany",
 "DatasetKey is Steiermärkisches Landesmuseum Joanneum - Herbarium GJO",
 "DatasetKey is The vascular plants collection (P) at the Herbarium of the Muséum national d'Histoire Naturelle (MNHN - Paris)",
 "DatasetKey is University of Graz, Institute of Plant Sciences - Herbarium GZU",
 "DatasetKey is Herbarium of University of Coimbra (COI)",
 "DatasetKey is Harvard University Herbaria: All Records",
 "DatasetKey is CAS Botany (BOT)",
 "DatasetKey is Phanerogamic Botanical Collections (S)"
 ]
 }
 ]
}

 The dataset includes 36696 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076822-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7bj2fj
title: Occurrence Download

description: A dataset containing 1308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bidens aristosa (Michx.) Britton",
 "HasCoordinate is true",
 "Year is greater than or equal to 1900",
 "BasisOfRecord is one of (Human Observation, Specimen, Unknown evidence)"
 ]
}

 The dataset includes 1308 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047976-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fceypp
title: Occurrence Download

description: A dataset containing 3361 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Scaeva pyrastri (Linnaeus, 1758)"
 ]
}

 The dataset includes 3361 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016680-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ynkevz
title: Occurrence Download

description: A dataset containing 418 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Crassula perforata E.Mey.",
 "TaxonKey is Kalanchoe fedtschenkoi Raym.-Hamet & H.Perrier"
 ]
}

 The dataset includes 418 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005305-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tzud6a
title: Occurrence Download

description: A dataset containing 616 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fritillaria cirrhosa D.Don"
 ]
}

 The dataset includes 616 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047968-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jesv7j
title: Occurrence Download

description: A dataset containing 1618 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Centre for Biodiversity Genomics - Canadian Specimens, Herbier du Québec (QUE) - Collection de plantes vasculaires, iNaturalist Research-grade Observations)",
 "GadmGid is CAN.11_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Lecanoromycetes"
 ]
}

 The dataset includes 1618 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004192-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ntq675
title: Occurrence Download

description: A dataset containing 342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Pterodoras granulosus (Valenciennes, 1821)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 342 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078790-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nznv3f
title: Occurrence Download

description: A dataset containing 21711 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Stachytarpheta Vahl"
 ]
}

 The dataset includes 21711 records from 467 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047996-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.madqgm
title: Occurrence Download

description: A dataset containing 32667 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Turnera L."
 ]
}

 The dataset includes 32667 records from 426 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004198-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26943729
title: Additional file 4 of Intra- and interspecific variation of Amblyomma ticks from southern Africa

description: Additional file 4: Dataset S3: Estimates of evolutionary divergence over sequence pairs between groups (interspecies p-distances). Values in red indicate the intraspecies p-distances.
DOI: 10.5281/zenodo.11490005
title: Dataset of "Raising Awareness for Inertial Sensors-based Keylogging on Smartphones" scientific research

description: Dataset for the article

Federico Montori, Luca Sciullo, and Luca Bedogni. 2024. Raising Awareness for Inertial Sensors-based Keylogging on Smartphones. In Proceedings of the 2024 International Conference on Information Technology for Social Good (GoodIT '24). Association for Computing Machinery, New York, NY, USA, 14–21. https://doi.org/10.1145/3677525.3678634

Please cite the above paper if you are using this dataset.
DOI: 10.5281/zenodo.11490006
title: Dataset of "Raising Awareness for Inertial Sensors-based Keylogging on Smartphones" scientific research

description: Dataset for the article

Federico Montori, Luca Sciullo, and Luca Bedogni. 2024. Raising Awareness for Inertial Sensors-based Keylogging on Smartphones. In Proceedings of the 2024 International Conference on Information Technology for Social Good (GoodIT '24). Association for Computing Machinery, New York, NY, USA, 14–21. https://doi.org/10.1145/3677525.3678634

Please cite the above paper if you are using this dataset.
DOI: 10.57745/z47foj
title: Nuclear Imaging.zip

description: :unav
DOI: 10.6084/m9.figshare.26943894
title: Additional file 2 of Development of a biomarker prediction model for post-trauma multiple organ failure/dysfunction syndrome based on the blood transcriptome

description: Additional file 2
DOI: 10.6084/m9.figshare.26943762
title: Additional file 2 of Sticking together: independent evolution of biofilm formation in different species of staphylococci has occurred multiple times via different pathways

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26943702
title: Additional file 4 of Large-scale copy number alterations are enriched for synthetic viability in BRCA1/BRCA2 tumors

description: Additional file 4: Table S3: List of identified recurrently copy number altered loci. (a) Enriched cytobands with deletions in OV. (b) Enriched cytobands with deletions in ER+ BC. (c) Enriched cytobands with amplifications in OV. (d) Enriched cytobands with amplifications in ER+ BC. (e) Common cytobands in OV and ER+ BC.
DOI: 10.17638/datacat.liverpool.ac.uk/2631
title: Image and model assets for AIgarMIC (agar dilution minimum inhibitory concentration software)

description: This data repository contains assets (primarily images and trained neural network models) to be used with AIgarMIC:
https://github.com/agerada/AIgarMIC.
DOI: 10.5281/zenodo.13692158
title: Replication files for "Effects of Seating Arrangements on Parliamentary Collaborations"

description: The folders contain all replication files for the paper:

Brandenberger, Laurence, and Theodora Bujaroska. 2024. Effects of Seating Arrangements on Parliamentary Collaborations.

The Rscript is commented to facilitate replication.
DOI: 10.5281/zenodo.13692159
title: Replication files for "Effects of Seating Arrangements on Parliamentary Collaborations"

description: The folders contain all replication files for the paper:

Brandenberger, Laurence, and Theodora Bujaroska. 2024. Effects of Seating Arrangements on Parliamentary Collaborations.

The Rscript is commented to facilitate replication.
DOI: 10.6084/m9.figshare.26943729.v1
title: Additional file 4 of Intra- and interspecific variation of Amblyomma ticks from southern Africa

description: Additional file 4: Dataset S3: Estimates of evolutionary divergence over sequence pairs between groups (interspecies p-distances). Values in red indicate the intraspecies p-distances.
DOI: 10.6084/m9.figshare.26943744
title: Additional file 9 of Intra- and interspecific variation of Amblyomma ticks from southern Africa

description: Additional file 9. The number of base differences per site from between sequences are shown. Standard error estimate(s) are shown above the diagonal. This analysis involved 51 nucleotide sequences. All ambiguous positions were removed for each sequence pair (pairwise deletion option). There were a total of 1844 positions in the final dataset. Evolutionary analyses were conducted in MEGA11 [1].
DOI: 10.6084/m9.figshare.26943732.v1
title: Additional file 5 of Intra- and interspecific variation of Amblyomma ticks from southern Africa

description: Additional file 5: Estimates of Evolutionary Divergence between Sequences. The number of base differences per site from between sequences are shown. Standard error estimate(s) are shown above the diagonal. This analysis involved 143 nucleotide sequences. All ambiguous positions were removed for each sequence pair (pairwise deletion option). There were a total of 387 positions in the final dataset. Evolutionary analyses were conducted in MEGA11 [1].
DOI: 10.6084/m9.figshare.26943741
title: Additional file 8 of Intra- and interspecific variation of Amblyomma ticks from southern Africa

description: Additional file 8: Estimates of Evolutionary Divergence between Sequences. The number of base differences per site from between sequences are shown. Standard error estimate(s) are shown above the diagonal. This analysis involved 121 nucleotide sequences. Codon positions included were 1st+2nd+3rd+Noncoding. All ambiguous positions were removed for each sequence pair (pairwise deletion option). There were a total of 492 positions in the final dataset. Evolutionary analyses were conducted in MEGA11 [1].
DOI: 10.6084/m9.figshare.26943738
title: Additional file 7 of Intra- and interspecific variation of Amblyomma ticks from southern Africa

description: Additional file 7: Estimates of Evolutionary Divergence between Sequences. The number of base differences per site from between sequences are shown. Standard error estimate(s) are shown above the diagonal. This analysis involved 141 nucleotide sequences. Codon positions included were 1st+2nd+3rd+Noncoding. All ambiguous positions were removed for each sequence pair (pairwise deletion option). There were a total of 651 positions in the final dataset. Evolutionary analyses were conducted in MEGA11 [1].
DOI: 10.6084/m9.figshare.26943705
title: Additional file 5 of Large-scale copy number alterations are enriched for synthetic viability in BRCA1/BRCA2 tumors

description: Additional file 5: Table S4. Transcriptional decreased genes in the enriched loci with deletions. Genes identified in (a) the combined bBRCA1/2 tumors in OV, (b) the combined bBRCA1/2 tumors in ER+ BC, (c) the bBRCA1 tumors in OV, (d) the bBRCA2 tumors in OV, and (e) the bBRCA2 tumors in ER+ BC.
DOI: 10.6084/m9.figshare.26943711.v1
title: Additional file 7 of Large-scale copy number alterations are enriched for synthetic viability in BRCA1/BRCA2 tumors

description: Additional file 7: Table S6. Genes increasing cell proliferation in BRCA1−-/−- or BRCA2−-/−- cells compared with wild-type cells. (a) Genes identified from BRCA1−-/−- RPE1 cells. (b) Genes identified from BRCA2−-/−- DLD1 cells.
DOI: 10.6084/m9.figshare.26943705.v1
title: Additional file 5 of Large-scale copy number alterations are enriched for synthetic viability in BRCA1/BRCA2 tumors

description: Additional file 5: Table S4. Transcriptional decreased genes in the enriched loci with deletions. Genes identified in (a) the combined bBRCA1/2 tumors in OV, (b) the combined bBRCA1/2 tumors in ER+ BC, (c) the bBRCA1 tumors in OV, (d) the bBRCA2 tumors in OV, and (e) the bBRCA2 tumors in ER+ BC.
DOI: 10.6084/m9.figshare.26943702.v1
title: Additional file 4 of Large-scale copy number alterations are enriched for synthetic viability in BRCA1/BRCA2 tumors

description: Additional file 4: Table S3: List of identified recurrently copy number altered loci. (a) Enriched cytobands with deletions in OV. (b) Enriched cytobands with deletions in ER+ BC. (c) Enriched cytobands with amplifications in OV. (d) Enriched cytobands with amplifications in ER+ BC. (e) Common cytobands in OV and ER+ BC.
DOI: 10.6084/m9.figshare.26943714
title: Additional file 8 of Large-scale copy number alterations are enriched for synthetic viability in BRCA1/BRCA2 tumors

description: Additional file 8: Table S7. DepMap gene effect values for candidate synthetic viable genes with BRCA1.
DOI: 10.6084/m9.figshare.26943714.v1
title: Additional file 8 of Large-scale copy number alterations are enriched for synthetic viability in BRCA1/BRCA2 tumors

description: Additional file 8: Table S7. DepMap gene effect values for candidate synthetic viable genes with BRCA1.
DOI: 10.6084/m9.figshare.26943732
title: Additional file 5 of Intra- and interspecific variation of Amblyomma ticks from southern Africa

description: Additional file 5: Estimates of Evolutionary Divergence between Sequences. The number of base differences per site from between sequences are shown. Standard error estimate(s) are shown above the diagonal. This analysis involved 143 nucleotide sequences. All ambiguous positions were removed for each sequence pair (pairwise deletion option). There were a total of 387 positions in the final dataset. Evolutionary analyses were conducted in MEGA11 [1].
DOI: 10.5281/zenodo.11215195
title: zhgarfield/sociallearningdata: Initial release
title: The Hunter-Gatherer Social Learning data

description: The initial release of the data package to accompany the submission and publication of Garfield & Lew-Levy (2024), Teaching is associated with the transmission of opaque culture and leadership across 23 egalitarian hunter-gatherer societies.
DOI: 10.6084/m9.figshare.26943807.v1
title: Additional file 1 of Prediction of mutation-induced protein stability changes based on the geometric representations learned by a self-supervised method

description: Supplementary file1
DOI: 10.57745/q71ire
title: CEST MRI.tar.gz

description: :unav
DOI: 10.6084/m9.figshare.26943807
title: Additional file 1 of Prediction of mutation-induced protein stability changes based on the geometric representations learned by a self-supervised method

description: Supplementary file1
DOI: 10.15468/dl.pqtgjd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lyctocoridae, Lyctocoridae, Lyctocoridae, Lyctocoridae, Lyctocoridae, Lyctocoridae, Lyctocoridae, Lyctocoridae, Lyctocoridae, Lyctocoridae, Lyctocoridae, Lyctocoridae, Lyctocoridae, Lyctocoridae Reuter, 1884, Lyctocoridae Reuter, 1884, Lyctocoridae (Reuter, 1884), Lyctocoridae Reuter, 1884, Lyctocoridae Reuter, 1884, Vetanthocoridae, Anthocoridae Amyot & Serville, 1843)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "Country is one of (China, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117332-240626123714530/datasets/export for details.
DOI: 10.5281/zenodo.13685320
title: Porcelain process raw videos audio files

description: Porcelain process raw videos audio files
DOI: 10.5281/zenodo.13685321
title: Porcelain process raw videos audio files

description: Porcelain process raw videos audio files
DOI: 10.6084/m9.figshare.26943951
title: Additional file 2 of CCT3/ACTN4/TFRC axis protects hepatocellular carcinoma cells from ferroptosis by inhibiting iron endocytosis

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26944050.v1
title: Additional file 1 of Primary biliary cholangitis has causal effects on systemic rheumatic diseases: a Mendelian randomization study

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26943789.v1
title: Additional file 1 of The relationship between socioeconomic status, medical accessibility, hope and psychological resilience of caregivers of children with chronic kidney disease in China: structural equation model

description: Supplementary Material 1. Additional file. Supplementary Tables 1- Demographic characteristic and univariate analysis results of caregivers for CKD children (.xlsx).
DOI: 10.5281/zenodo.11215194
title: zhgarfield/sociallearningdata: Update 1

description: This release includes updates and fixes to variable names and additional data associated with bias assessment methods, including data on ethnographer type and ethnographic source quality data publically available and provided by eHRAF.
DOI: 10.5281/zenodo.13643295
title: Metagenome Assembled Genomes (MAGs) from faecal microbiomes of great tits and blue tits

description: Overview:

The vertebrate gut microbiome plays crucial roles in host health and disease. However, there is limited data on the microbiomes of wild birds, most of which is restricted to barcode sequences. We therefore explored the use of shotgun metagenomics on the faecal microbiomes of two wild bird species widely used as model organisms in ecological studies: the great tit (Parus major) and the Eurasian blue tit (Cyanistes caeruleus). High and Medium quality Metagenome Assembled Genomes (MAGs) were assembled from these metagenomes and are made available as a catalogue in this archive.

Methods:

Metagenomic reads were trimmed, and quality controlled using FastP configured to a minimum phred score of 20 and minimum length of 50 bp. In order to avoid contamination of the bins by eukaryotic sequences, Tiara v1.0.3  was used to classify contigs longer than 3.000 kb into their high-level kingdoms, allowing to exclude sequences of a eukaryotic or of an organelle origin, and only retaining all unclassified contigs and prokaryotic contigs for the binning step. Contigs were binned using MaxBin2 v2.2.7 , SemiBin2 v2.1.0 and Metabat2 v 2.15 independently. The bins were refined using DasTool v 1.1.7 using a min score threshold of 0.3. The quality of the refined bins was obtained using CheckM2 v 1.0.2, and any bin with a contamination above 10% were excluded. The final MAGs were classified as Low-quality (<50% completeness, <10% contamination), medium-quality (>50% completeness, <10% contamination) and high-quality (>90% completeness, <5% contamination), as recommended by the MIMAG specification . Finally, the MAGs were dereplicated using an dRep v 3.4.3 with an ANI of 95% and classified using gtdb-tk v2.4.0 using the gtdb database release220.

Files:



The MAGs_sequences_v1.0.0 contains the fasta sequence for the individual MAGs assembled in this project

The MAGs_catalogue_v1.0.0.xlsx contains a description of the quality, taxonomic annotation and characteristics of each MAGs in the dataset
DOI: 10.5281/zenodo.13643296
title: Metagenome Assembled Genomes (MAGs) from faecal microbiomes of great tits and blue tits

description: Overview:

The vertebrate gut microbiome plays crucial roles in host health and disease. However, there is limited data on the microbiomes of wild birds, most of which is restricted to barcode sequences. We therefore explored the use of shotgun metagenomics on the faecal microbiomes of two wild bird species widely used as model organisms in ecological studies: the great tit (Parus major) and the Eurasian blue tit (Cyanistes caeruleus). High and Medium quality Metagenome Assembled Genomes (MAGs) were assembled from these metagenomes and are made available as a catalogue in this archive.

Methods:

Metagenomic reads were trimmed, and quality controlled using FastP configured to a minimum phred score of 20 and minimum length of 50 bp. In order to avoid contamination of the bins by eukaryotic sequences, Tiara v1.0.3  was used to classify contigs longer than 3.000 kb into their high-level kingdoms, allowing to exclude sequences of a eukaryotic or of an organelle origin, and only retaining all unclassified contigs and prokaryotic contigs for the binning step. Contigs were binned using MaxBin2 v2.2.7 , SemiBin2 v2.1.0 and Metabat2 v 2.15 independently. The bins were refined using DasTool v 1.1.7 using a min score threshold of 0.3. The quality of the refined bins was obtained using CheckM2 v 1.0.2, and any bin with a contamination above 10% were excluded. The final MAGs were classified as Low-quality (<50% completeness, <10% contamination), medium-quality (>50% completeness, <10% contamination) and high-quality (>90% completeness, <5% contamination), as recommended by the MIMAG specification . Finally, the MAGs were dereplicated using an dRep v 3.4.3 with an ANI of 95% and classified using gtdb-tk v2.4.0 using the gtdb database release220.

Files:



The MAGs_sequences_v1.0.0 contains the fasta sequence for the individual MAGs assembled in this project

The MAGs_catalogue_v1.0.0.xlsx contains a description of the quality, taxonomic annotation and characteristics of each MAGs in the dataset
DOI: 10.6084/m9.figshare.26943948.v1
title: Additional file 1 of CCT3/ACTN4/TFRC axis protects hepatocellular carcinoma cells from ferroptosis by inhibiting iron endocytosis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26943954
title: Additional file 3 of CCT3/ACTN4/TFRC axis protects hepatocellular carcinoma cells from ferroptosis by inhibiting iron endocytosis

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26944293.v1
title: Additional file 2 of Single-cell RNA sequencing identifies inherent abnormalities of adipose-derived stem cells from nonlesional sites of patients with localized scleroderma

description: Additional file 2: Table S2. Molecular signature for each cell type or cluster.
DOI: 10.6084/m9.figshare.26943948
title: Additional file 1 of CCT3/ACTN4/TFRC axis protects hepatocellular carcinoma cells from ferroptosis by inhibiting iron endocytosis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26943954.v1
title: Additional file 3 of CCT3/ACTN4/TFRC axis protects hepatocellular carcinoma cells from ferroptosis by inhibiting iron endocytosis

description: Supplementary Material 3