cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1555009
title: Distance and Comparison Between Neighboring Trees

description: The data for this lab was collected at York Universit's woodlot at 4:30 P.M and was made through a contribution of efforts by Farkhanda, Olivia, Ratiba, Huda and Reena all of who began collecting such data by walking from the edge of the woodlot to the centre in a straight line. Every instance where an adult tree was approached, the distance to the nearest tree surrounding it was measured using transect measuring tape and recorded in meters. The distance of the first tree approached and its closest neighbour both had the distance at breast height measured in meters as well. In addition, the condition of each tree was also recorded on a scale of 0 to 2 where zero is a dead tree and 2 is a full canopy. This was measured with the help of human vision. These steps were then repeated nine more times for a total of 10 tree pairs. This data allowed the observers make comparisons between two trees who are growing in close proximity to eachother in order see a pattern amongst the data and to give a direction for further research studies. The conditions during the lab were in the shaded area within the woodlot. There was a slight breeze, the ground was cool and there was not any humidity.
DOI: 10.6084/m9.figshare.1555004.v1
title: Data for Woodland survey 2

description: In the woodlot, the percent coverage of the canopy and distance to nearest sapling was measured for adult elm trees. Elm trees were selected at random from an area of approximately one hectare. A tree was determined to be adult at about three times the height of a human. The distances between saplings and adults were rounded to the nearest tenth of a meter. Canopy coverage was estimated by viewing the sky from the base of the tree through a square formed by my thumbs and index fingers. These two variables were recorded for ten adult elm trees.
DOI: 10.6084/m9.figshare.1555007.v1
title: Peterson et al Raw Biofilm Data

description: Raw data for the study "Role of Sediment Composition and Biostratinomy in the Development of Microbial Biofilms in Vertebrate Remains".
DOI: 10.6084/m9.figshare.1555003
title: Ecology Lab 2

description: Authors: Kamil Adamczewski, Joelle Brooker, Brittney Jorisch, and Karin Yosefi On September 24, 2015, at approximately 3:30 pm, 20 different individuals of the species cow vetch were observed. In order to determine which individuals were to be studied, a transect was placed vertically on the ground in a random location that was decided upon by the group members. The transect spanned 490 inches. Five traits were noted. The first was the distance of the individual on the transect. This was defined as what measurement on the transect the individual was adjacent to. This was recorded in inches. The next trait was the height of the individual. This was determined by using a transect, which was placed vertically along the plant, with the origin of the transect placed at the very bottom of the visible portion of the plant's stem. This was recorded in inches. The third trait was the number of leaves on each of the individuals. This number was approximated by manually counting the leaves on one of the plant's stems, counting the total number of stems, and multiplying the number of leaves on one stem with the total number of stems. The fourth trait was the number of flowers on each of the individuals. This number was determined by manually counting the flowers that were present on each stem. The fifth trait was to determine the level of crowding of each individual. Ranks were given based on the amount of surrounding vegetation within 20 inches of the plant being observed: 0 indicated that there were no surrounding plants, just grass; 1 indicated that there were two or less plants and grass; 2 indicated that there were 3-5 plants and grass; and 3 indicated there were 6 or more plants and grass. The purpose of this observation was to determine if the level of crowding of an individual was related to the plant's height and flower and leaf growth. The observation was conducted in the grasslands adjacent to the Danby woodlot, on the north-east side of York University, Keele campus. The temperature was 22 degrees Celcius, and there was no precipitation.
DOI: 10.6084/m9.figshare.1555001
title: Y72.fasta

description: Studies have suggested links between colonic fermentation of dietary fibers and improved metabolic health. The objectives of this study were to determine if non-digestible feruloylated oligo- and polysaccharides (FOPS), a maize-derived dietary fiber, could counteract the deleterious effects of high-fat (HF) feeding in mice and explore if metabolic benefits were linked to the gut microbiota. C57BL/6J mice (n=8/group) were fed a low-fat (LF; 10 kcal% fat), HF (62 kcal% fat), or HF diet supplemented with FOPS (5%, w/w). Pronounced differences in FOPS responsiveness were observed: four mice experienced cecal enlargement and enhanced short chain fatty acid production, indicating increased cecal fermentation (F-FOPS). Only these mice displayed improvements in glucose metabolism compared with HF-fed mice. Blooms in the gut microbial genera Blautia and Akkermansia were observed in three of the F-FOPS mice; these shifts were associated with reductions in body and adipose tissue weights compared with the HF-fed control mice. No improvements in metabolic markers or weights were detected in the four mice whose gut microbiota did not respond to FOPS. These findings demonstrate that FOPS-induced improvements in weight gain and metabolic health in mice depended on the ability of an individual’s microbiota to ferment FOPS.
DOI: 10.6084/m9.figshare.1555002
title: Dataset 3, woodlot study on distance between trees 2m off of the transect, Sept 21, 2015

description: A study of 10 pairs of trees was conducted to determine the diameter of each tree and the distance between two trees through continuous measurement, placed within 2meters of the transect line in centimeters. The study was done on Monday, September 21, 2015, around 4pm under 18ᵒC at the Saywell woodlot in the South-West corner of the Keele campus at York University. The transect line used to determine which trees to use started at a random spot on the edge of the woodlot and heads towards the center of the woods. The trees are categorized under full canopy, alive, or dead tree. The diameter of each tree was obtained in centimeters at breast height (122cm), where roots of trees that branched off before reaching breast height is excluded.
DOI: 10.6084/m9.figshare.1555003.v1
title: Ecology Lab 2

description: Authors: Kamil Adamczewski, Joelle Brooker, Brittney Jorisch, and Karin Yosefi On September 24, 2015, at approximately 3:30 pm, 20 different individuals of the species cow vetch were observed. In order to determine which individuals were to be studied, a transect was placed vertically on the ground in a random location that was decided upon by the group members. The transect spanned 490 inches. Five traits were noted. The first was the distance of the individual on the transect. This was defined as what measurement on the transect the individual was adjacent to. This was recorded in inches. The next trait was the height of the individual. This was determined by using a transect, which was placed vertically along the plant, with the origin of the transect placed at the very bottom of the visible portion of the plant's stem. This was recorded in inches. The third trait was the number of leaves on each of the individuals. This number was approximated by manually counting the leaves on one of the plant's stems, counting the total number of stems, and multiplying the number of leaves on one stem with the total number of stems. The fourth trait was the number of flowers on each of the individuals. This number was determined by manually counting the flowers that were present on each stem. The fifth trait was to determine the level of crowding of each individual. Ranks were given based on the amount of surrounding vegetation within 20 inches of the plant being observed: 0 indicated that there were no surrounding plants, just grass; 1 indicated that there were two or less plants and grass; 2 indicated that there were 3-5 plants and grass; and 3 indicated there were 6 or more plants and grass. The purpose of this observation was to determine if the level of crowding of an individual was related to the plant's height and flower and leaf growth. The observation was conducted in the grasslands adjacent to the Danby woodlot, on the north-east side of York University, Keele campus. The temperature was 22 degrees Celcius, and there was no precipitation.
DOI: 10.6084/m9.figshare.1554929
title: Psychiatry - historical articles

description: This is an academic database containing relevant peer-reviewed journal articles and other types of documentary evidence concerning the role of psychiatry in human rights violations during the XX and XXI centuries.
DOI: 10.6084/m9.figshare.1555334.v1
title: Crowdfunding projects involving Australian university staff

description: This spreadsheet provides information on crowdfunding projects involving Australian university staff. Information is drawn from Pozible, Kickstarter, Indiegogo and Rockethub. Information covers the time period October 2011 to 21 August 2015.
DOI: 10.6084/m9.figshare.1554912
title: new fileset

description: Multiple forms of active sensing reveal memory-based spatial attention in an electric fish James J. Jun, Andre Longtin, Leonard Maler
DOI: 10.6084/m9.figshare.1555001.v2
title: Y72.fasta

description: Studies have suggested links between colonic fermentation of dietary fibers and improved metabolic health. The objectives of this study were to determine if non-digestible feruloylated oligo- and polysaccharides (FOPS), a maize-derived dietary fiber, could counteract the deleterious effects of high-fat (HF) feeding in mice and explore if metabolic benefits were linked to the gut microbiota. C57BL/6J mice (n=8/group) were fed a low-fat (LF; 10 kcal% fat), HF (62 kcal% fat), or HF diet supplemented with FOPS (5%, w/w). Pronounced differences in FOPS responsiveness were observed: four mice experienced cecal enlargement and enhanced short chain fatty acid production, indicating increased cecal fermentation (F-FOPS). Only these mice displayed improvements in glucose metabolism compared with HF-fed mice. Blooms in the gut microbial genera Blautia and Akkermansia were observed in three of the F-FOPS mice; these shifts were associated with reductions in body and adipose tissue weights compared with the HF-fed control mice. No improvements in metabolic markers or weights were detected in the four mice whose gut microbiota did not respond to FOPS. These findings demonstrate that FOPS-induced improvements in weight gain and metabolic health in mice depended on the ability of an individual’s microbiota to ferment FOPS.
DOI: 10.6084/m9.figshare.1555002.v1
title: Dataset 3, woodlot study on distance between trees 2m off of the transect, Sept 21, 2015

description: A study of 10 pairs of trees was conducted to determine the diameter of each tree and the distance between two trees through continuous measurement, placed within 2meters of the transect line in centimeters. The study was done on Monday, September 21, 2015, around 4pm under 18ᵒC at the Saywell woodlot in the South-West corner of the Keele campus at York University. The transect line used to determine which trees to use started at a random spot on the edge of the woodlot and heads towards the center of the woods. The trees are categorized under full canopy, alive, or dead tree. The diameter of each tree was obtained in centimeters at breast height (122cm), where roots of trees that branched off before reaching breast height is excluded.
DOI: 10.6084/m9.figshare.1555334.v2
title: Crowdfunding projects involving Australian university staff

description: The spreadsheet 'Crowdfunding research...' provides information on crowdfunding projects involving Australian university staff. Information is drawn from Pozible, Kickstarter, Indiegogo and Rockethub. Information covers the time period October 2011 to 21 August 2015.The spreadsheet '2016 - Research Crowdfunding v2' provides an update with information drawn from Chuffed, FundScience, GetFunding, Indiegogo, Kickstarter, Pozible, Rockethub, and Thinkable.
DOI: 10.6084/m9.figshare.1554910
title: Supplementary data 2

description: Contains no-landmark learning trials from 4 animals. Data contains x,y position of the head and EOD rate (r) sampled at 100 Hz.
DOI: 10.6084/m9.figshare.1554911
title: Supplementary Data 1

description: Contains landmark learning trials from 4 animals. Data contains x,y position of the head and EOD rate (r) sampled at 100 Hz.
DOI: 10.6084/m9.figshare.1554912.v1
title: new fileset

description: Multiple forms of active sensing reveal memory-based spatial attention in an electric fish James J. Jun, Andre Longtin, Leonard Maler
DOI: 10.6084/m9.figshare.1554929.v2
title: Psychiatry - historical articles

description: This is an academic database containing relevant peer-reviewed journal articles and other types of documentary evidence concerning the role of psychiatry in human rights violations during the XX and XXI centuries.
DOI: 10.6084/m9.figshare.1555001.v1
title: Disparate Metabolic Responses in Mice Fed a High-fat Diet Supplemented with Maize-derived Non-digestible Feruloylated Oligo- and Polysaccharides are Linked to Changes in the Gut Microbiota

description: Scope: Studies have suggested links between colonic fermentation of dietary fibers and improved metabolic health. The objectives of this study were to determine if non-digestible feruloylated oligo- and polysaccharides (FOPS), a maize-derived dietary fiber, could counteract the deleterious effects of high-fat (HF) feeding in mice and explore if metabolic benefits were linked to the gut microbiota. Methods and results: C57BL/6J mice (n=8/group) were fed a low-fat (LF; 10 kcal% fat), HF (62 kcal% fat), or HF diet supplemented with FOPS (5%, w/w). Pronounced differences in FOPS responsiveness were observed: four mice experienced cecal enlargement and enhanced short chain fatty acid production, indicating increased cecal fermentation (F-FOPS). Only these mice displayed improvements in glucose metabolism compared with HF-fed mice. Blooms in the gut microbial genera Blautia and Akkermansia were observed in three of the F-FOPS mice; these shifts were associated with reductions in body and adipose tissue weights compared with the HF-fed control mice. No improvements in metabolic markers or weights were detected in the four mice whose gut microbiota did not respond to FOPS. Conclusions: These findings demonstrate that FOPS-induced improvements in weight gain and metabolic health in mice depended on the ability of an individual’s microbiota to ferment FOPS. Here, we provide the Fasta data of our sequece obtained from the study. Y1-Y24 are the sequence file of the mice gut microbiota from baseline (n=24); Y25-Y48 are the sequence file of the mice gut microbiota after one week of introducing FOPS (n=24); Y49-Y72 are the sequence file of the mice gut microbiota at the end of the study at 8 week (n=24).
DOI: 10.6084/m9.figshare.1554909
title: Readme

description: Meta data
DOI: 10.6084/m9.figshare.1554911.v1
title: Supplementary Data 1

description: Contains landmark learning trials from 4 animals. Data contains x,y position of the head and EOD rate (r) sampled at 100 Hz.
DOI: 10.6084/m9.figshare.1554909.v1
title: Readme

description: Meta data
DOI: 10.6084/m9.figshare.1554910.v1
title: Supplementary data 2

description: Contains no-landmark learning trials from 4 animals. Data contains x,y position of the head and EOD rate (r) sampled at 100 Hz.
DOI: 10.6084/m9.figshare.1554929.v1
title: Psychiatry - historical articles

description: This is an academic database containing relevant peer-reviewed journal articles and other types of documentary evidence concerning the role of psychiatry in human rights violations during the XX and XXI centuries.
DOI: 10.6084/m9.figshare.1554896
title: WK3: Field Training with Plants

description: With a group of 5 people, we went to the woodlot of York University campus to measure the distance between two adult trees and their conditions.
DOI: 10.6084/m9.figshare.1554900
title: The gut microbiome is altered in a letrozole-induced mouse model of polycystic ovary syndrome

description: letrozole_seqs.fna.gz is the processed and quality checked data from QIIME, after having run the split_libraries command. It is the seqs.fna file compressed using gzip. pcos_mapping.txt is the mapping file for the sequences that has the metadata and runs in QIIME.
DOI: 10.6084/m9.figshare.1554901
title: The gut microbiome is altered in a letrozole-induced mouse model of polycystic ovary syndrome

description: letrozole_seqs.fna.gz is the processed and quality checked data from QIIME, after having run the split_libraries command. It is the seqs.fna file compressed using gzip. pcos_mapping.txt is the mapping file for the sequences that has the metadata and runs in QIIME.
DOI: 10.6084/m9.figshare.1554895
title: Distance to closest tree, dbh, and condition of trees along a transect in the Saywell Woodlot

description: Data was collected on September 21, 2015 between 3:30 and 4:30 pm in the Saywell Woodlot on York University campus. The temperature at the time of data collection was 19 degrees Celcius and it was partly cloudy. Leaves in the area had not yet begun their autumnal colour change to a significant extent. The experimenters laid down a transect starting at the edge of the woodlot (a pathway that runs alongside the woodlot), going towards the centre of the woodlot. The position of the transect was determined by using a random number generator to generate a number between 1 and 100. The experimenters then walked this number of steps along the pathway, then placed the transect and began walking along the transect towards the centre of the woodlot. Each time the experimenters came across an adult tree (a tree over 8ft tall) within 0.5m of the transect, they visually estimated which tree in the woodlot was closest to the tree along the transect. The experimenters then measured the distance between the tree along the transect and the tree closest to it by measuring from the centre of one trunk to the centre of the other trunk. The diameter at breast height (dbh) of both trees was measured and the experimenters estimated the condition of each tree by categorizing it as dead (0), alive (1), or having a huge green canopy (3). Data was recorded for 10 adult trees along the transect.
DOI: 10.6084/m9.figshare.1554896.v1
title: WK3: Field Training with Plants

description: With a group of 5 people, we went to the woodlot of York University campus to measure the distance between two adult trees and their conditions.
DOI: 10.6084/m9.figshare.1554900.v1
title: The gut microbiome is altered in a letrozole-induced mouse model of polycystic ovary syndrome

description: letrozole_seqs.fna.gz is the processed and quality checked data from QIIME, after having run the split_libraries command. It is the seqs.fna file compressed using gzip. pcos_mapping.txt is the mapping file for the sequences that has the metadata and runs in QIIME.
DOI: 10.6084/m9.figshare.1554891
title: 2015-09-24 turbine test bed demo

description: Raw data from OE 400 turbine test bed demo. For more information, see the link below.
DOI: 10.6084/m9.figshare.1554877
title: Where have all the rodents gone? The effects of attrition on preclinical research on stroke and cancer

description: Collected files related to "Where have all the rodents gone? The effects of attrition on preclinical research on stroke and cancer", by Constance Holman, Sophie K Piper, Ulrike Grittner, Andreas Antonios Diamantaras, Bob Siegerink, Jonathan Kimmelman and and Ulrich Dirnagl.
DOI: 10.6084/m9.figshare.1554878
title: miRNA expression in LT-HSCs upon Thrombopoietin stimulation via STAT5

description: <strong>File description:<br></strong> <strong><br></strong> <strong>MX: STAT5-deficient</strong> <strong>FL: STAT5-wt</strong> <strong>1/2: cohort 1 and 2</strong> <strong>+: TPO-stimulated</strong> <strong>-: unstimulated<br></strong> <strong><br></strong> <strong>MiRNA expression in murine long-term repopulating hematopoietic stem cells upon Thrombopoietin stimuation via STAT5A/B</strong> Conditional deletion of STAT5A/B was induced in 6-week old mice (STAT5fl/fl x Mx1:Cre and STAT5fl/fl; 16-20 mice per group and experiment) via Poly(I:C) injections as previously described. LT-HSCs were isolated from 12-16 week old mice via FACS sorting. 5000-10000 viable LT-HSCs were starved for 5h and subsequently stimulated wit 100ng/ml TPO (Peprotech) for 2h. The RNA was isolated by using a miRNeasy mini kit (Qiagen). cDNA was synthesised from total RNA using a microRNA gene-specific RT-primer pool according to the MicroRNA Megaplex Assay protocol (Megaplex™ Pools - Applied Biosystems). The preamplification reaction was performed according to the manufacture´s protocol. The TaqMan Array MicroRNA Rodent Cards were analysed using the 384 well TaqMan Low Density Array default thermal cycling conditions (ABI PRISM 7900HT).
DOI: 10.6084/m9.figshare.1554901.v1
title: The gut microbiome is altered in a letrozole-induced mouse model of polycystic ovary syndrome

description: letrozole_seqs.fna.gz is the processed and quality checked data from QIIME, after having run the split_libraries command. It is the seqs.fna file compressed using gzip. pcos_mapping.txt is the mapping file for the sequences that has the metadata and runs in QIIME.
DOI: 10.6084/m9.figshare.1554878.v1
title: miRNA expression in LT-HSCs upon Thrombopoietin stimulation via STAT5

description: <strong>File description:<br></strong> <strong><br></strong> <strong>MX: STAT5-deficient</strong> <strong>FL: STAT5-wt</strong> <strong>1/2: cohort 1 and 2</strong> <strong>+: TPO-stimulated</strong> <strong>-: unstimulated<br></strong> <strong><br></strong> <strong>MiRNA expression in murine long-term repopulating hematopoietic stem cells upon Thrombopoietin stimuation via STAT5A/B</strong> Conditional deletion of STAT5A/B was induced in 6-week old mice (STAT5fl/fl x Mx1:Cre and STAT5fl/fl; 16-20 mice per group and experiment) via Poly(I:C) injections as previously described. LT-HSCs were isolated from 12-16 week old mice via FACS sorting. 5000-10000 viable LT-HSCs were starved for 5h and subsequently stimulated wit 100ng/ml TPO (Peprotech) for 2h. The RNA was isolated by using a miRNeasy mini kit (Qiagen). cDNA was synthesised from total RNA using a microRNA gene-specific RT-primer pool according to the MicroRNA Megaplex Assay protocol (Megaplex™ Pools - Applied Biosystems). The preamplification reaction was performed according to the manufacture´s protocol. The TaqMan Array MicroRNA Rodent Cards were analysed using the 384 well TaqMan Low Density Array default thermal cycling conditions (ABI PRISM 7900HT).
DOI: 10.6084/m9.figshare.1554842
title: Mapping file for Longitarsus 16S rRNA microbiome sequences

description: This is the mapping file for the Illumina MiSeq pyrosequenced 16S rRNA gene microbiome of 3 <em>Longitarsus</em> flea beetle species: <em>L. luridis, L. melanocephalus, </em>and<em> L. pratensis</em>.
DOI: 10.6084/m9.figshare.1554844
title: Example

description: ---