cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0189416.10fu
title: SH0189416.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0189417.10fu
title: SH0189417.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0189418.10fu
title: SH0189418.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0189419.10fu
title: SH0189419.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0189420.10fu
title: SH0189420.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0189421.10fu
title: SH0189421.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.26692453
title: Additional file 1 of Investigation of the acute pathogenesis of spondyloarthritis/HLA-B27-associated anterior uveitis based on genome-wide association analysis and single-cell transcriptomics

description: Additional file 1. Instrumental variable information for key plasma proteins
DOI: 10.6084/m9.figshare.26692453.v1
title: Additional file 1 of Investigation of the acute pathogenesis of spondyloarthritis/HLA-B27-associated anterior uveitis based on genome-wide association analysis and single-cell transcriptomics

description: Additional file 1. Instrumental variable information for key plasma proteins
DOI: 10.6084/m9.figshare.26692456
title: Additional file 2 of Investigation of the acute pathogenesis of spondyloarthritis/HLA-B27-associated anterior uveitis based on genome-wide association analysis and single-cell transcriptomics

description: Additional file 2. Inverse MR results for AS and key plasma proteins
DOI: 10.6084/m9.figshare.26692456.v1
title: Additional file 2 of Investigation of the acute pathogenesis of spondyloarthritis/HLA-B27-associated anterior uveitis based on genome-wide association analysis and single-cell transcriptomics

description: Additional file 2. Inverse MR results for AS and key plasma proteins
DOI: 10.15468/dl.6e7wtv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.679422 -32.789197, 148.679422 -32.791443, 148.681668 -32.791443, 148.681668 -32.789197, 148.679422 -32.789197)), ((148.681668 -32.791443, 148.681668 -32.795935, 148.683914 -32.795935, 148.683914 -32.791443, 148.681668 -32.791443)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067613-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26573326
title: Additional file 4 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 4: Table S3. Gene Ontology analysis for biological process for up- and downregulated genes in bulk RNA-seq.
DOI: 10.6084/m9.figshare.26573335
title: Additional file 7 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 7: Table S6. List of population marker genes used for supervised clustering analysis of snRNA-seq data.
DOI: 10.6084/m9.figshare.26573320.v1
title: Additional file 2 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 2: Table S1. List of differentially expressed genes in bulk RNA-seq.
DOI: 10.6084/m9.figshare.26573329.v1
title: Additional file 5 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 5: Table S4. Gene Ontology analysis for cellular component for up- and downregulated genes in bulk RNA-seq.
DOI: 10.6084/m9.figshare.26573338.v1
title: Additional file 8 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 8: Table S7. Quantification of cells belonging to each of the major population clusters in snRNA-seq data.
DOI: 10.6084/m9.figshare.26573332
title: Additional file 6 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 6: Table S5. Clusters of protein-protein interactions (PPI) for the corresponding proteins of up- and downregulated genes in bulk RNA-seq.
DOI: 10.6084/m9.figshare.26573323
title: Additional file 3 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 3: Table S2. Quantitative PCR validation of top differentially-expressed genes.
DOI: 10.6084/m9.figshare.26573344
title: Additional file 10 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 10: Table S9. Gene Ontology analysis for biological process for up- and downregulated genes in major sn-RNAseq clusters.
DOI: 10.6084/m9.figshare.26573323.v1
title: Additional file 3 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 3: Table S2. Quantitative PCR validation of top differentially-expressed genes.
DOI: 10.6084/m9.figshare.26573326.v1
title: Additional file 4 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 4: Table S3. Gene Ontology analysis for biological process for up- and downregulated genes in bulk RNA-seq.
DOI: 10.6084/m9.figshare.26573329
title: Additional file 5 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 5: Table S4. Gene Ontology analysis for cellular component for up- and downregulated genes in bulk RNA-seq.
DOI: 10.6084/m9.figshare.26573341.v1
title: Additional file 9 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 9: Table S8.  List of differentially expressed genes in major sn-RNAseq clusters.
DOI: 10.6084/m9.figshare.26573344.v1
title: Additional file 10 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 10: Table S9. Gene Ontology analysis for biological process for up- and downregulated genes in major sn-RNAseq clusters.
DOI: 10.6084/m9.figshare.26573350
title: Additional file 12 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 12: Table S11. Number of reads for each biological replicate in bulk RNA-seq.
DOI: 10.6084/m9.figshare.26692537
title: Additional file 1 of Cryopreserved cGMP-compliant human pluripotent stem cell-derived hepatic progenitors rescue mice from acute liver failure through rapid paracrine effects on liver cells

description: Additional file 1. Table S1: Primers for Taqman assays
DOI: 10.6084/m9.figshare.26692537.v1
title: Additional file 1 of Cryopreserved cGMP-compliant human pluripotent stem cell-derived hepatic progenitors rescue mice from acute liver failure through rapid paracrine effects on liver cells

description: Additional file 1. Table S1: Primers for Taqman assays
DOI: 10.6084/m9.figshare.26692540
title: Additional file 2 of Cryopreserved cGMP-compliant human pluripotent stem cell-derived hepatic progenitors rescue mice from acute liver failure through rapid paracrine effects on liver cells

description: Additional file 2. Table S2: Antibodies for Immunofluorescence Assay
DOI: 10.6084/m9.figshare.26692540.v1
title: Additional file 2 of Cryopreserved cGMP-compliant human pluripotent stem cell-derived hepatic progenitors rescue mice from acute liver failure through rapid paracrine effects on liver cells

description: Additional file 2. Table S2: Antibodies for Immunofluorescence Assay
DOI: 10.6084/m9.figshare.26573338
title: Additional file 8 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 8: Table S7. Quantification of cells belonging to each of the major population clusters in snRNA-seq data.
DOI: 10.6084/m9.figshare.26573332.v1
title: Additional file 6 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 6: Table S5. Clusters of protein-protein interactions (PPI) for the corresponding proteins of up- and downregulated genes in bulk RNA-seq.
DOI: 10.6084/m9.figshare.26573320
title: Additional file 2 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 2: Table S1. List of differentially expressed genes in bulk RNA-seq.
DOI: 10.6084/m9.figshare.26573350.v1
title: Additional file 12 of Cell-specific vulnerability to metabolic failure: the crucial role of parvalbumin expressing neurons in creatine transporter deficiency

description: Additional file 12: Table S11. Number of reads for each biological replicate in bulk RNA-seq.
DOI: 10.6084/m9.figshare.23118212
title: Modeling documents for manuscipt Wang et al. “Strontium isoscape of sub-Saharan Africa allows tracing origins of victims of the transatlantic slave trade”

description: This repository contains code and raster files to reproduce the results described in the manuscript Wang et al. "Strontium isoscape of sub-Saharan Africa allows tracing origins of victims of the transatlantic slave trade" (submitted to Nature Communications).This zip file includes the following documents:1) subfolder <i>data</i>: one Excel datasheet for sampling data (<i>Wang_et_al_Dataset_S1</i>), one Excel datasheet (<i>seeds_4model</i>), the R script for modeling (<i>pred_df_split</i>), and the other Excel datasheet (<i>published_enslaved_Africans_isotope_data</i>) for conducting AssignR model.2) subfolder <i>R scripts</i>: four related scripts for modeling the RF isoscapes (<i>RF modeling_isoscape</i>, <i>mop_tol, caret_model_repeatedcv, and infillNN</i>) and one for modeling the possible origins of enslaved Africans from two archaeological sites (<i>AssignR_origins_of_enslaved_Africans</i>).3) subfolder <i>results</i>: two tiff files with resulting Sr isoscape (<i>panaf_model_repeatedCV</i>) and its prediction standard error map (<i>panaf_model_repeatedCV_se</i>).4) subfolder <i>Supplementary data files</i>: four Supplementaery Data files and one source data file for the manuscript.<br><br><br><br><br>
DOI: 10.15468/dl.zfe25p
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spathelia coccinea Proctor"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016607-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtekth
title: Occurrence Download

description: A dataset containing 11667 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eudromia elegans I.Geoffroy Saint-Hilaire, 1832"
 ]
}

 The dataset includes 11667 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016608-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7u2sr
title: Occurrence Download

description: A dataset listing the 494 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Données d'occurrence de quelques insectes de Côte d'Ivoire"
 ]
}

 The dataset's 494 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016595-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddhnrp
title: Occurrence Download

description: A dataset containing 111413 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Daphne laureola L."
 ]
}

 The dataset includes 111413 records from 828 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016592-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mr3k5x
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-100.0",
 "Geometry POLYGON((1.86857 43.20169,2.84988 43.20169,2.84988 43.61626,1.86857 43.61626,1.86857 43.20169))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Sphagnum L., Drosera L., Gentiana pneumonanthe L.)"
 ]
}

 The dataset includes 137 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016611-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gng9qt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Orobanche ariana Gontsch., Orobanche ariana Gontsch., Orobanche ariana Gontsch., Orobanche ariana Gontsch., Orobanche ariana Gontsch., Orobanche ariana Gontsch., 1933)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016612-241107131044228/datasets/export for details.
DOI: 10.15468/dl.gxgkae
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Herpestes javanicus (É.Geoffroy Saint-Hilaire, 1818)",
 "Country is Martinique",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 78 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016613-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23708/jlahxb
title: Contours des bassins versants et réseau hydrographique de la Fatala, du Kolente, du Konkoure, des Little Scarcies, du Tomine Corubal dans leur partie Guinéenne

description: Jeux de données SIG et débits mensuels par bassins versants d'Afrique de l'Ouest et Centrale. Les fichiers fournis sont des fichiers d'entrée des modèles (couches vecteur SIG au format shapefile) des bassins versants constituées à partir des données cartographiques des 356 bassins référencés sous la base SIEREM. http://www.hydrosciences.fr/sierem/produits/produits/livret.pdf La Carte de l'Afrique de l'Ouest et Centrale : bassins hydrographiques de Claudine Dieulin est disponible dans la Collection Atlas et cartes à l'IRD https://www.editions.ird.fr/produit/53/9782709920827/carte-de-l-afrique-de-l-ouest-et-centrale-bassins-hydrographiques Les principales stations de mesures hydrométriques sur les bassins versants : Basin Fatala FATALA AT PONT DE BINDAN, code orstom 1174000103 Basin Kolente KOLENTE AT BADERA 1 (Medina Oula), code orstom 1174500105 Basin Konkoure KONKOURE AT AMARIA, code orstom 1175000101 BADI AT BAC DE BADI, code orstom 1175001201 KAKRIMA AT KONDOMBOFOU, code orstom 1175002206 KONKOURE AT PONT DE LINSAN, code orstom 1175000109 KONKOURE AT PONT DE TELIMELE, code orstom 1175000105 Basin Little Scarcies MONGO AT MARELA (Pont Mongo), code orstom 1174401921 Basin Tomine Corubal BANTALA AT BANTALA BAC, code orstom 1176506305 KOLIBA AT GAOUAL, code orstom 1176501610 KOMBA AT KOMBA BAC, code orstom 1176503716 Tous les fichiers de données sont au format ArcGIS (shapefiles) : les contours des bassins versants sont représentés par des polygones le réseau hydrographique du bassin versant est représenté linéairement Pour chaque station une chronique de débits mensuels issus du système d'informations SIEREM complète le jeu de données (format texte)
DOI: 10.15468/dl.vk957u
title: Occurrence Download

description: A dataset containing 6433 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "Geometry POLYGON((93.68 -9.74766,142.34753 -9.64396,141.18945 -1.30325,142.39053 6.42828,93.68 6.42828,93.68 -9.74766))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EN, CR)",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 6433 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016614-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.