cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12798898
title: Metagenomic insights into microbial community structure and metabolism in alpine permafrost on the Tibetan Plateau

description: Microbes in Tibetan permafrost

 



This project repository associated with the following manuscript:




Luyao Kang, Yutong Song, Rachel Mackelprang, Dianye Zhang, Shuqi Qin, Leiyi Chen, Linwei Wu, Yunfeng Peng and Yuanhe Yang*. Metagenomic insights into microbial community structure and metabolism in alpine permafrost on the Tibetan Plateau.


Abstract

        Permafrost, characterized by its frozen soil, serves as a unique habitat for diverse microorganisms. Understanding these microbial communities is crucial for predicting the response of permafrost ecosystems to climate change. However, large-scale evidence regarding stratigraphic variations in microbial profiles remains limited. Here, we analyze microbial community structure and functional potential based on 16S rRNA gene amplicon sequencing and metagenomic data obtained from a ∼1,000 km permafrost transect on the Tibetan Plateau. We find that microbial alpha diversity declines but beta diversity increases down the soil profile. Microbial assemblages are primarily governed by dispersal limitation and drift; the importance of drift decreases but that of dispersal limitation increases with soil depth. Moreover, genes related to reduction reactions (e.g., ferric iron reduction, dissimilatory nitrate reduction, and denitrification) are enriched in the subsurface and permafrost layers. In addition, microbial groups involved in alternative electron accepting processes are more diverse and contribute highly to community-level metabolic profiles in the subsurface and permafrost layers, likely reflecting the lower redox potential and more complicated trophic strategies for microorganisms in deeper soils. Overall, these findings provide comprehensive insights into large-scale stratigraphic profiles of microbial community structure and functional potentials in permafrost regions.

        For the description of the files, please see README.md file.
DOI: 10.6084/m9.figshare.26355046.v1
title: 流动-应力-溶解系统中的裂缝密封

description: This is the dataset for "Fracture sealing in a flow-stress-dissolution system" by Li et al.
DOI: 10.34740/kaggle/dsv/9015711
title: Health Workforce Shortage Areas
DOI: 10.5281/zenodo.12799104
title: Castello d'Agogna data 2018
DOI: 10.34740/kaggle/dsv/9015722
title: AutoXGB
DOI: 10.34740/kaggle/dsv/9015723
title: OnlineFree
DOI: 10.15468/dl.jj6xyd
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-68.20171 -57.35576,-44.88303 -57.35576,-44.88303 -48.03238,-68.20171 -48.03238,-68.20171 -57.35576))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Fissurellidea d'Orbigny, 1839"
 ]
}

 The dataset includes 9 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033589-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26318464
title: Supplementary Tables.xlsx from Mate choice in the brain: species differ in how male traits ‘turn on’ gene expression in female brains

description: Mate choice plays a fundamental role in speciation, yet we know little about the molecular mechanisms that underpin this crucial decision-making process. Stickleback fish differentially adapted to limnetic and benthic habitats are reproductively isolated and females of each species use different male traits to evaluate prospective partners and reject heterospecific males. Here, we integrate behavioural data from a mate choice experiment with gene expression profiles from the brains of females actively deciding whether to mate. We find substantial gene expression variation between limnetic and benthic females, regardless of behavioural context, suggesting general divergence in constitutive gene expression patterns, corresponding to their genetic differentiation. Intriguingly, female gene co-expression modules covary with male display traits but in opposing directions for sympatric populations of the two species, suggesting male displays elicit a dynamic neurogenomic response that reflects known differences in female preferences. Furthermore, we confirm the role of numerous candidate genes previously implicated in female mate choice in other species, suggesting that evolutionary tinkering with these conserved molecular processes underlies divergent mate preferences. Taken together, our study adds important new insights to our understanding of the molecular processes underlying female decision-making critical for generating sexual isolation and speciation.
DOI: 10.6084/m9.figshare.26318464.v1
title: Supplementary Tables.xlsx from Mate choice in the brain: species differ in how male traits ‘turn on’ gene expression in female brains

description: Mate choice plays a fundamental role in speciation, yet we know little about the molecular mechanisms that underpin this crucial decision-making process. Stickleback fish differentially adapted to limnetic and benthic habitats are reproductively isolated and females of each species use different male traits to evaluate prospective partners and reject heterospecific males. Here, we integrate behavioural data from a mate choice experiment with gene expression profiles from the brains of females actively deciding whether to mate. We find substantial gene expression variation between limnetic and benthic females, regardless of behavioural context, suggesting general divergence in constitutive gene expression patterns, corresponding to their genetic differentiation. Intriguingly, female gene co-expression modules covary with male display traits but in opposing directions for sympatric populations of the two species, suggesting male displays elicit a dynamic neurogenomic response that reflects known differences in female preferences. Furthermore, we confirm the role of numerous candidate genes previously implicated in female mate choice in other species, suggesting that evolutionary tinkering with these conserved molecular processes underlies divergent mate preferences. Taken together, our study adds important new insights to our understanding of the molecular processes underlying female decision-making critical for generating sexual isolation and speciation.
DOI: 10.6084/m9.figshare.26355067
title: <b>Plant mixture effects on Collembola increased under reduced water availability</b>

description: In this study, we combined a field experiment with a meta-analysis to examine how the effects of plant mixture on soil Collembola abundance and diversity change with water availability. We assessed soil Collembola abundance, richness, evenness, and composition in stands dominated by <i>Populus tremuloides</i>, <i>Pinus banksiana</i>, and their relatively even mixtures under three precipitation treatments: reduced (-25% throughfall), ambient, and added (+25% throughfall) in a boreal forest of Central Canada.
DOI: 10.15468/dl.p5azkm
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.01189 -57.42939,-55.45425 -57.42939,-55.45425 -49.60977,-75.01189 -49.60977,-75.01189 -57.42939))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Fissurellidea patagonica (Strebel, 1907)"
 ]
}

 The dataset includes 8 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033590-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.16383942
title: Plant diversity increases the abundance and diversity of soil fauna: a meta-analysis

description: Plant mixture effects on the abundance and diversity of soil fauna.
DOI: 10.6084/m9.figshare.16383942.v1
title: Plant diversity increases the abundance and diversity of soil fauna: a meta-analysis

description: Plant mixture effects on the abundance and diversity of soil fauna.
DOI: 10.15468/dl.4r8vmq
title: Occurrence Download

description: A dataset containing 41910 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (South America, North America, Europe, Oceania, Asia, Antarctica, Africa)",
 "Country is one of (Switzerland, Italy, United Kingdom of Great Britain and Northern Ireland, Belgium, United States of America, Australia, Portugal, Netherlands, Spain, France)",
 "TaxonKey is Polycarpon tetraphyllum (L.) L."
 ]
}

 The dataset includes 41910 records from 593 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033588-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ucc7v9
title: Occurrence Download

description: A dataset containing 3714631 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tachybaptus ruficollis (Pallas, 1764), Troglodytes troglodytes (Linnaeus, 1758))",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 3714631 records from 1680 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171091-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v26ey3
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyloscirtus lindae (Duellman & Altig, 1978)"
 ]
}

 The dataset includes 34 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150509-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/y4kvt9
title: Macroinvertebrate and algae occurrence data collection of the Laboratorio de Ecología Acuática of the Universidad de Cuenca

description: The Aquatic Ecology Laboratory (Laboratorio de Ecología Acuática, LEA) of the University of Cuenca was formed in 2010 with the aim of generating knowledge on the biology and ecology of high mountain freshwater ecosystems (lotic and lentic). LEA carries out research projects within several research lines such as: freshwater biomonitoring, estimation of environmental flows, taxonomy of freshwater insects, algae, ecology of aquatic communities, use of remote sensing for water resource management, lake limnology, etc. The biological data obtained from both lakes and rivers are consolidated in the database. The dataset published contains: 747 records derived from monitoring of lakes and rivers in the Ecuador.
DOI: 10.15468/dl.a236m6
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Gambia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Gmelina L., Gmelina G.O.Sars, 1894)"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000745-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2zqwhp
title: Occurrence Download

description: A dataset containing 822 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liatris aspera Michx.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (United States of America, Canada)"
 ]
}

 The dataset includes 822 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0268712-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8a3xcr
title: Occurrence Download

description: A dataset containing 19289 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herbario, Departamento de Farmacología, Farmacognosia & Botánica, Facultad de Farmacia, Universidad Complutense, Madrid: MAF-Lich"
 ]
}

 The dataset includes 19289 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150518-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktmt3h
title: Occurrence Download

description: A dataset containing 395 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bretschneidera sinensis Hemsl."
 ]
}

 The dataset includes 395 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016467-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7rmh6
title: Occurrence Download

description: A dataset containing 6456 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Lymantria dispar Linnaeus, 1758",
 "Year 2005-2022"
 ]
}

 The dataset includes 6456 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0265952-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mvfut
title: Occurrence Download

description: A dataset containing 1462 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-110.26173 22.25653,-108.62338 22.75692,-114.42577 33.00066,-117.52822 32.67346,-115.51236 27.58592,-110.26173 22.25653))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Patagioenas fasciata (Say, 1822)"
 ]
}

 The dataset includes 1462 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150520-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m294s8
title: Occurrence Download

description: A dataset containing 28622 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carcharhinus plumbeus (Nardo, 1827)",
 "HasCoordinate is True"
 ]
}

 The dataset includes 28622 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016474-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t9zvjb
title: Occurrence Download

description: A dataset containing 1802 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bombus suckleyi Greene, 1860"
 ]
}

 The dataset includes 1802 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171106-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25679811
title: Data for "Cingulate microstimulation induces negative decision-making via reduced top-down influence on primate fronto-cingulo-striatal network"

description: "source_data_figureXX.xlsx" are the source data files for each figure.
DOI: 10.15468/dl.vyrdc5
title: Occurrence Download

description: A dataset containing 954 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Tropicos MO Specimen Data",
 "TaxonKey is Eschweilera coriacea (DC.) S.A.Mori"
 ]
}

 The dataset includes 954 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150528-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25679811.v1
title: Data for "Cingulate microstimulation induces negative decision-making via reduced top-down influence on primate fronto-cingulo-striatal network"

description: "source_data_figureXX.xlsx" are the source data files for each figure.
DOI: 10.15468/dl.yug7kf
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Anomalocosmoecus Schmid, 1957"
 ]
}

 The dataset includes 87 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018682-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hx878q
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuscuta polygonorum Engelm.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (United States of America, Canada)"
 ]
}

 The dataset includes 120 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0269305-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2uycb5
title: Occurrence Download

description: A dataset containing 7788 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum erianthum D.Don"
 ]
}

 The dataset includes 7788 records from 253 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0325065-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xph7mn
title: Occurrence Download

description: A dataset containing 1844 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lyctus Fabricius, 1792)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1844 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002463-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6b8a74
title: Occurrence Download

description: A dataset containing 877 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fissistigma oldhamii (Hemsl.) Merr."
 ]
}

 The dataset includes 877 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0233626-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nfvbed
title: Occurrence Download

description: A dataset containing 474 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Brickellia coulteri A.Gray"
 ]
}

 The dataset includes 474 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150599-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6fqt5m
title: Occurrence Download

description: A dataset containing 1300 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Russula anthracina Romagn., Russula fuscorubroides Bon)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 1300 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165467-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrqcxa
title: Occurrence Download

description: A dataset containing 514 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Polygraphus grandiclava C.G.Thomson, 1886, Polymixis rufocincta Geyer, 1828)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 514 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0325056-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.