cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5c84j/15
title: Short-term Climate Variabiliy Models - directory 9 of 16

description: Contains Model output data for Short-term Climate Variability Models for species in the genera Melozone, Mergus, Mimus, Mniotilta, Molothrus, Myadestes, Mycteria, Myiarchus, Nucifraga, Numenius, Nycticorax, Oreortyx, Oreoscoptes, and Oreothlypis.
DOI: 10.5061/dryad.5c84j/16
title: Short-term Climate Variabiliy Models - directory 10 of 16

description: Contains Model output data for Short-term Climate Variability Models for species in the genera Oxyura, Pandion, Passerculus, Passerella, Passerina, Patagioenas, Pelecanus, Perisoreus, Petrochelidon, Peucaea, Phainopepla, Phalacrocorax, Phalaenoptilus, Phalaropus, and Pheucticus.
DOI: 10.5061/dryad.5c84j/17
title: Short-term Climate Variabiliy Models - directory 11 of 16

description: Contains Model output data for Short-term Climate Variability Models for species in the genera Pica, Picoides, Pinicola, Pipilo, Piranga, Pitangus, and Platalea.
DOI: 10.5061/dryad.5c84j/18
title: Short-term Climate Variabiliy Models - directory 12 of 16

description: Contains Model output data for Short-term Climate Variability Models for species in the genera Plegadis, Podiceps, Podilymbus, Poecile, Polioptila, Pooecetes, Progne, Psaltriparus, Pyrocephalus, Quiscalus, Rallus, Recurvirostra, Regulus, and Riparia.
DOI: 10.5061/dryad.5c84j/19
title: Short-term Climate Variabiliy Models - directory 13 of 16

description: Contains Model output data for Short-term Climate Variability Models for species in the genera Salpinctes, Sayornis, Scolopax, Seiurus, Selasphorus, and Setophaga.
DOI: 10.5061/dryad.5c84j/20
title: Short-term Climate Variabiliy Models - directory 14 of 16

description: Contains Model output data for Short-term Climate Variability Models for species in the genera Sialia, Sitta, Sphyrapicus, Spinus, Spiza, Spizella, Stelgidopteryx, and Stellula.
DOI: 10.5061/dryad.5c84j/21
title: Short-term Climate Variabiliy Models - directory 15 of 16

description: Contains Model output data for Short-term Climate Variability Models for species in the genera Sterna, Sternula, Streptopelia, Strix, Sturnella, Tachycineta, Thalasseus, Thryomanes, Thryothorus, Toxostoma, Tringa, Troglodytes, Turdus, and Tympanuchus.
DOI: 10.5061/dryad.5f9v7/1
title: Jonas_et_al_PNAS_2016_Part_1

description: Intracerebral electrophysiological data (P03 to P16) and set of stimuli used
DOI: 10.5061/dryad.5f9v7/2
title: Jonas_et_al_PNAS_2016_Part_2

description: Intracerebral electrophysiological data (P18 to P30) and set of stimuli used
DOI: 10.5061/dryad.5f9v7/3
title: Jonas_et_al_PNAS_2016_Part_3

description: Intracerebral electrophysiological data (P31 to P39) and set of stimuli used
DOI: 10.5061/dryad.70h1h.2
title: Data from: From the mountains to the coast and back again: ancient biogeography in a radiation of short-range endemic harvestmen from California
DOI: 10.5061/dryad.70h1h.2/1.2
title: Calicina Raw Morphological Data Matrix

description: Combined morphological data matrix used for comparative analyses showing unique specimen ID (KEM#), species idenfitication, text locality information, and sex for each specimen measured. Raw measurements of Scute Length (measured dorsally at the midline in mm) and Leg II Length (combined length of individual segments starting with the trochanter in mm) were treated as continuous characters in comparative analyses. Eye development was treated as a binary character (present vs. absent).
DOI: 10.5061/dryad.70h1h.2/2.2
title: Phased RNA Polymerase II Transcription Factor Alignment

description: Phased RNA Polymerase II Transcription Factor alignment used in the final *BEAST species tree inference. Heterozygous haplotypes were reconstructed using the program PHASE v2.1 (Stephens et al., 2001).This gene region is orthologous to Ixodes protein ISCW004924.
DOI: 10.5061/dryad.70h1h.2/3.2
title: Phased Uroporphyrinogen Decarboxylase Alignment

description: Phased Uroporphyrinogen Decarboxylase alignment used in the final *BEAST species tree inference. Heterozygous haplotypes were reconstructed using the program PHASE v2.1 (Stephens et al., 2001).This gene region is orthologous to Ixodes protein ISCW020804.
DOI: 10.5061/dryad.771t4/1
title: Measures of local grizzly bear abundance and surrounding road density and food supply

description: Data fields:   1) "DNA_sampling_cell_ID" is the 7x7 km cell used to allocate hair snag sites and used as a random effect in models; 2) "Session_number" is the 2 week session number of sampled site between 25 May and 17 July 2004; 3) "Number_grizzlybears" is the unique bears detected at hair snag site; 4) "Road_density_7440m" is the moving window road density (km/km^2) within a 7440 m radius window calculated in ArcGIS; 5) "Shep_can_fruit_DigE_1690m" is the modeled digestible energy (kcal) of Shepherdia canadensis fruit within a 1690 m radius of the hair snag site summarized in an ArcGIS moving window; 6) "Shep_can_fruit_DigE_7440m" is the modeled digestible energy (kcal) of Shepherdia canadensis fruit within a 7440 m radius of the hair snag site as summarized in an ArcGIS moving window; 7) "Ungulate_DigE_7440m" is the digestible energy (kcal) of ungulate matter within a 7440 m radius of the hair snag site as summarized in an ArcGIS moving window; 8) "NDVI_JulyMax_1690m" is the Natural Difference Vegetation Index (NDVI) maximum value in the month of July from MODIS remote sensing data during the year 2006 with values averaged within a 1690 m radius of the hair snag site as summarized in an ArcGIS moving window; 9) "NDVI_JulyMax_7440m"  is the Natural Difference Vegetation Index (NDVI) maximum value in the month of July from MODIS remote sensing data during the year 2006 with values averaged within a 7440 m radius of the hair snag site as summarized in an ArcGIS moving window.
DOI: 10.5061/dryad.98d51/10
title: Supplementary Figure 10: Parsimony-based strict consensus of the rDNA (ITS + 26S) data matrix for the Crossopetalum analysis.

description: Parsimony-based strict consensus of the rDNA (ITS + 26S) data matrix for the Crossopetalum analysis. Jackknife values ≥ 50% are shown above each branch.
DOI: 10.5061/dryad.98d51/12
title: Supplementary Figure 12: Parsimony-based strict consensus of the trnL-F data matrix for the Crossopetalum analysis.

description: Parsimony-based strict consensus of the trnL-F data matrix for the Crossopetalum analysis. Jackknife values ≥ 50% are shown above each branch.
DOI: 10.5061/dryad.98d51/4
title: Supplementary Figure 4: Parsimony-based strict consensus of the matK data matrix for the Pleurostylia analysis. Jackknife values ≥ 50% are shown above each branch.

description: Parsimony-based strict consensus of the matK data matrix for the Pleurostylia analysis. Jackknife values ≥ 50% are shown above each branch.
DOI: 10.5061/dryad.98d51/5
title: Supplementary Figure 5: Parsimony-based strict consensus of the trnL-F data matrix for the Pleurostylia analysis.

description: Parsimony-based strict consensus of the trnL-F data matrix for the Pleurostylia analysis. Jackknife values ≥ 50% are shown above each branch.
DOI: 10.5061/dryad.98d51/6
title: Supplementary Figure 6: Parsimony-based strict consensus of the plastid (matK + trnL-F) data matrix for the Pleurostylia analysis.

description: Parsimony-based strict consensus of the plastid (matK + trnL-F) data matrix for the Pleurostylia analysis. Jackknife values ≥ 50% are shown above each branch.
DOI: 10.5061/dryad.98d51/7
title: Supplementary Figure 7: Parsimony-based strict consensus of the molecular data matrix for the Pleurostylia analysis.

description: Parsimony-based strict consensus of the molecular data matrix for the Pleurostylia analysis. Jackknife values ≥ 50% are shown above each branch.
DOI: 10.5061/dryad.98d51/8
title: Supplementary Figure 8: Parsimony-based strict consensus of the 26S rDNA data matrix for the Crossopetalum analysis.

description: Parsimony-based strict consensus of the 26S rDNA data matrix for the Crossopetalum analysis. Jackknife values ≥ 50% are shown above each branch.
DOI: 10.5061/dryad.98d51/9
title: Supplementary Figure 9: Parsimony-based strict consensus of the ITS rDNA data matrix for the Crossopetalum analysis.

description: Parsimony-based strict consensus of the ITS rDNA data matrix for the Crossopetalum analysis. Jackknife values ≥ 50% are shown above each branch.
DOI: 10.5061/dryad.b34d2/1
title: Adams et al 2016 Ecography

description: Presence-absence data for canopy ant species collected from 153 tree crowns in Panama
DOI: 10.5061/dryad.b8262/1
title: Chair_2016_data

description: Genotypica data (SSR) and descriptive data
DOI: 10.5061/dryad.c87rm/2
title: SNP dataset in plink format
DOI: 10.5061/dryad.g77m8/1
title: Bird data core plots

description: Birds detected during 3-4 point count visits inside plots situated in forest, jungle rubber, rubber and oil palm plantations. Plot code letters represent the landscape (B: Bukit 12, H: Harapan Rainforest), the land-use (F: forest, J: jungle rubber, R: rubber, O: oil palm, G: homeGarden), and the replicate. Some lines with zero detections were included when the plot was visited but no bird was detected.
DOI: 10.5061/dryad.g77m8/2
title: Bird data homegardens

description: Birds detected during 3-4 point count visits inside plots situated in homegardens of Jambi, Sumatra. The stratum and horizontal distance were not recorded in homegardens. The used plants were only recorded in homegardens. Plot code letters represent the landscape (B: Bukit 12, H: Harapan Rainforest), the land-use (F: forest, J: jungle rubber, R: rubber, O: oil palm, G: homeGarden), and the replicate.
DOI: 10.5061/dryad.g77m8/4
title: Homegardens data, anonymous

description: General homegarden data (management, vegetation, administrative)
DOI: 10.5061/dryad.g77m8/5
title: Homegarden plants

description: Plant species found during he homegarden survey. Abundances are approximate above 30 individuals.
DOI: 10.5061/dryad.g77m8/6
title: Point count analysis R script

description: All statistical models and figures can be reproduced with this script.
DOI: 10.5061/dryad.jk680/11
title: ReadMe

description: Information about the files.
DOI: 10.5061/dryad.jk680/5
title: population_map_ecotype

description: Individual's ecotype membership (by population (or lake) or sympatric ecotype).
DOI: 10.5061/dryad.jk680/6
title: geometric_morphometrics

description: Geometric morphometrics data in TPS format.
DOI: 10.5061/dryad.jk680/7
title: infos_tps

description: Information (ecotype and sex) for geometric morphometrics analyses.
DOI: 10.5061/dryad.jk680/8
title: measurements

description: Gill rakers and linear measurements data.
DOI: 10.5061/dryad.kj6j1/4
title: Figure 5 data: survival under starvation conditions for four selection treatments at three salinities

description: Figure 5 data: number of surviving copepods (out of 10 adult females) under starvation conditions for four selection treatments (HS = high salinity, LS = low salinity, TS = selection for increased heat tolerance, U = control) at three exposure salinities (low=5ppt, med=35ppt, high=90ppt)
DOI: 10.5061/dryad.pn1j6/1
title: Insect egg size and hatch time

description: This data set consists of compiled data from 68 sources on insect egg size and hatch time for 98 species from 12 insect orders (Coleoptera, Hemiptera, Lepidoptera, Orthoptera, Megaloptera, Hymenoptera, Diptera, Ephemeroptera, Heteroptera, Odonata, Plecoptera, and Trichoptera). The range of egg masses in the data set spans five orders of magnitude.
DOI: 10.5061/dryad.qj367/1
title: Simulation code

description: Functions that simulate trees and associated tip-trait data under various scenarios of rate-heterogeneity.
DOI: 10.5061/dryad.qj367/2
title: Median scaled tree (BAMM)

description: Function that outputs the median scaled tree (a tree with branches scaled by the rate of evolution) obtained by fitting BAMM on a tree & the associated tip trait data. The function computes the per-branch median rates across the posterior tree distribution.
DOI: 10.5061/dryad.qq300/1
title: SAF and S-values from TRM and TRW

description: The raw data from Figures 3 to 6 used in the manuscript.
DOI: 10.5061/dryad.v5m24/2
title: RAD_SNPdata_47eels_1330SNPs_STRUCTURE

description: SNP file in STRUCTURE format. The data encompases 47 individuals: 7 hybrids and 20 individuals considered to be pure specimens from each species. The data set was used for estimating hybrid classes for the 7 hybrids. Please see Supporting Information Note 3 for more information.
DOI: 10.5061/dryad.vf5fk/1
title: Table S1 (Excel): cDNA library characteristics of all 108 cDNA libraries.

description: Sample preparation failed for eight libraries (indicated in the second column).
DOI: 10.5061/dryad.vf5fk/2
title: Table S2 (Excel): Numbers of mapped reads.

description: Number of reads that mapped to each of 20554 exons (rows), listed separately for each library (columns E-CX); ZosmaID (column A): gene ID based on the Zostera marina genome annotation v2.1 (GenBank Accession: LFYR00000000); mRNAID (column B): the mapped sequence ID; Source (column C): the source of annotation (inference from homology or top BLAST hit); Description (column D): the gene description.
DOI: 10.5061/dryad.vf5fk/3
title: Table S3 (Excel): Regularized log-transformed expression values.

description: Regularized log-transformed expression values of 12948 exons (rows), listed separately for each library (column E-CY). Exons of low expression (library average &lt;5) or highly variable expression (standard deviation over all libraries &gt; library average) are not listed; ZosmaID (column A): gene ID based on the Zostera marina genome annotation v2.1 (GenBank Accession: LFYR00000000); mRNAID (column B): the mapped sequence ID; Source (column C): the source of annotation (inference from homology or top BLAST hit); Description (columnD): the gene description; baseMean (column CZ): the mean of normalized counts for all samples; sdcol (column DA): the standard deviation of expression counts that were normalized by size factors for all samples.
DOI: 10.5061/dryad.vf5fk/4
title: Table S4 (Excel): Annotations of mapped reads.

description: ZosmaID: gene ID based on the Zostera marina genome annotation v2.1 from the ORCAE database, GenBank Accession: LFYR00000000); mRNAID: the mapped sequence ID; name: the gene description; annotation.source: the source of annotation (inference from homology or top BLAST hit); and GO.terms: the associated Gene Ontology terms.
DOI: 10.5061/dryad.0735s/1
title: Horn&Cowley_Tnewberryi Genotypes

description: The microsatellite genotypes for the adult and offspring samples from the Horn and Cowley manuscript.
DOI: 10.5061/dryad.2dh81/1
title: Fecundity[Scramble]
DOI: 10.5061/dryad.2dh81/2
title: Fecundity[Sequential]
DOI: 10.5061/dryad.2dh81/3
title: Fecundity[Sequential+DifferenceinCost]
DOI: 10.5061/dryad.2dh81/4
title: Rank[Scramble]
DOI: 10.5061/dryad.2dh81/5
title: Rank[Sequential]
DOI: 10.5061/dryad.2dh81/6
title: Rank+Fecundity[Sequential]
DOI: 10.5061/dryad.2dh81/7
title: Survival[Scramble]
DOI: 10.5061/dryad.3mc1v/1
title: Dryad data

description: Source data for analyses of the context and consequences of grunts
DOI: 10.5061/dryad.3rt26/3
title: Humphreysetal_MEE_Gnetales_cycads_trees

description: Maximum clade credibility trees for Gnetales and cycads based on Beast analysis of published matK, rbcL, 18S and, for cycads, PHYP sequences.
DOI: 10.5061/dryad.3v71f/1
title: Transcriptome assemblies

description: Transcriptome assemblies for Salt Point in northern California, USA, (SA, 39˚20’N, 123˚33’W) and Bird Rock in southern California (BD, 32˚49’N, 117˚16’W)Tigriopus populations
DOI: 10.5061/dryad.4mf63/1
title: Figures

description: This is the sorted data for the figures in the associated publication
DOI: 10.5061/dryad.4mf63/2
title: SizeAssortment24-7-15

description: original data of observations and experiments
DOI: 10.5061/dryad.5c84j/22
title: Short-term Climate Variabiliy Models - directory 16 of 16

description: Contains Model output data for Short-term Climate Variability Models for species in the genera Tyrannus, Tyto, Vermivora, Vireo, Xanthocephalus, and Zenaida.
DOI: 10.5061/dryad.5p65q/1
title: diet_age

description: Contains the R script that uses the data file 1213all.csv to analyze dietary variation and make the graphs.
DOI: 10.5061/dryad.5p65q/2
title: 201213all

description: Principal file containing all the prey data
DOI: 10.5061/dryad.5p65q/3
title: fitnessR

description: R script to analyze effect of diet on components of fitness. Reads into the data file fitndiet1213.csv and feeding1213.csv
DOI: 10.5061/dryad.5p65q/4
title: feeding1213

description: Contains the feeding rates of different prey types across age classes
DOI: 10.5061/dryad.5p65q/5
title: fitndiet1213

description: Contains measures of offspring condition and feeding rates
DOI: 10.5061/dryad.70h1h.1
title: Data from: From the mountains to the coast and back again: ancient biogeography in a radiation of short-range endemic harvestmen from California
DOI: 10.5061/dryad.70h1h.2/4.2
title: Phased Ski-Interacting Protein Alignment

description: Phased Ski-Interacting Protein alignment used in the final *BEAST species tree inference. Heterozygous haplotypes were reconstructed using the program PHASE v2.1 (Stephens et al., 2001).This gene region is orthologous to Ixodes protein ISCW021146.
DOI: 10.5061/dryad.70h1h.2/5.2
title: Raw Climatic Data

description: Raw climatic data for all known published (Ubick and Briggs, 1989) and SDSU Museum of Biodiversity collection localities for Calicina specimens from Bioclimatic layers 1-19 of the WORLDCLIM dataset v.1.4 Data were extracted at 30 arc-second (1 km) resolution (Hijmans et al., 2005) using the program DIVA-GIS (Hijmans et al., 2004).
DOI: 10.5061/dryad.7j3rq/1
title: contigs

description: A draft assembly generated form 100 bp non-overlapping paired-end reads (~500 bp insert) (SRA bioproject PRJNA317499) using the program Velvet
DOI: 10.5061/dryad.877ts/1
title: Austrian Norway spruce provenance test 1978 - Individual tree heights at age of 7 to 15

description: All measured tree heights (in cm) from the Austrian Norway spruce provenance trial 1978. For details on sites and provenances (i.e., populations) see the other two data files with climate data. The trial sites were measured in 1983 and 1988, at 5 and 10 years after their establishment. This provided height data for the trees at the age of 10 and 15 years. During the 1983 measurement, the shoot length for the preceding three years was also measured, which provided heights for the trees at the age of 7, 8, and 9 years. The trial was established at the Austrian Federal Research and Training Centre for Forests, Natural Hazards and Landscape (BFW) by Dr. K.Holzer. Measurements by former staff at the BFW.
DOI: 10.5061/dryad.877ts/2
title: Austrian Norway spruce provenance test 1978 - list of trial sites and climatic details

description: All trial sites and according climatic details are given. Climate variables were provided by the Central Institute for Meteorology and Geodynamics, Vienna, Austria. For details see DOI: 10.1016/j.foreco.2012.01.039
DOI: 10.5061/dryad.877ts/3
title: Austrian Norway spruce provenance test 1978 - list of populations (provenances) and climatic details

description: All tested provenances and according climatic details are given. Climate variables were provided by the Central Institute for Meteorology and Geodynamics, Vienna, Austria. For details see DOI: 10.1016/j.foreco.2012.01.039
DOI: 10.5061/dryad.98d51/11
title: Supplementary Figure 11: Parsimony-based strict consensus of the matK data matrix for the Crossopetalum analysis.

description: Parsimony-based strict consensus of the matK data matrix for the Crossopetalum analysis. Jackknife values ≥ 50% are shown above each branch.
DOI: 10.5061/dryad.98d51/13
title: Supplementary Figure 13: Parsimony-based strict consensus of the plastid (matK + trnL-F) data matrix for the Crossopetalum analysis.

description: Parsimony-based strict consensus of the plastid (matK + trnL-F) data matrix for the Crossopetalum analysis. Jackknife values ≥ 50% are shown above each branch.
DOI: 10.5061/dryad.98d51/14
title: Supplementary Figure 14: Parsimony-based strict consensus of the molecular data matrix for the Crossopetalum analysis.

description: Parsimony-based strict consensus of the molecular data matrix for the Crossopetalum analysis. Jackknife values ≥ 50% are shown above each branch.
DOI: 10.5061/dryad.98d51/15
title: Supplementary Figure 15: Parsimony-based strict consensus of the trnL-F data matrix for the Crossopetalum analysis that includes C. bokdamii.

description: Parsimony-based strict consensus of the trnL-F data matrix for the Crossopetalum analysis that includes C. bokdamii. Jackknife values ≥ 50% are shown above each branch.
DOI: 10.5061/dryad.98d51/16
title: Supplementary Figure 16: Parsimony-based strict consensus of the plastid (matK + trnL-F) data matrix for the Crossopetalum analysis that includes C. bokdamii.

description: Parsimony-based strict consensus of the plastid (matK + trnL-F) data matrix for the Crossopetalum analysis that includes C. bokdamii. Jackknife values ≥ 50% are shown above each branch.
DOI: 10.5061/dryad.98d51/17
title: Supplementary Figure 17: Parsimony-based strict consensus of the molecular data matrix for the Crossopetalum analysis that includes C. bokdamii.

description: Parsimony-based strict consensus of the molecular data matrix for the Crossopetalum analysis that includes C. bokdamii. Jackknife values ≥ 50% are shown above each branch.
DOI: 10.5061/dryad.98d51/18
title: Table 1: Data-matrix and tree statistics for each of the phylogenetic analyses.

description: Data-matrix and tree statistics for each of the phylogenetic analyses. “CI” = ensemble consistency index (Kluge and Farris 1969) on the most parsimonious tree(s) for the parsimony-informative characters. “RI” = ensemble retention index (Farris 1989).
DOI: 10.5061/dryad.dh38s/1
title: Ragsdale_Ivers_data

description: Original data reported in Figures 3 and 4. Please note: The original sequences shown in Figure 2 of the associated publication (Ragsdale and Ivers. 2016. Evolution. doi:10.1111/evo.13011) are available at http://dx.doi.org/10.5061/dryad.34h7v
DOI: 10.5061/dryad.dj3v1/1
title: @REPOSITORY Romero-Haro et al. The oxidative cost of reproduction depends on early development oxidative stress and sex in

description: Datafile for the manuscript: The oxidative cost of reproduction depends on early development oxidative stress and sex in a bird species
DOI: 10.5061/dryad.g0d1d/1
title: PONE-D-15-29188R1-S1_Dataset
DOI: 10.5061/dryad.k1r85/1
title: Dataset for Kampis, Parise, Csibra, & Kovacs (2016)

description: EEG Dataset for article "On potential ocular artifacts in infant EEG: A reply to comments by Köster"
DOI: 10.5061/dryad.p52sq/1
title: Clitarchus transcriptome assembly from five different tissues

description: Transcriptome assembly constructed from C. hookeri female antennae, head and prothorax, midgut, leg and male terminalia. More details are shown in ReadMe file.
DOI: 10.5061/dryad.p52sq/2
title: Clitarchus four genomic scaffolds

description: Genomic scaffolds were obtained from Chen Wu's unpublished data. Scaffold1029 contains OBP4, OBP5 and OBP6. The other scaffolds contain the nine GH9 cellulase genes.
DOI: 10.5061/dryad.qg91m/1
title: Data 1 - R&N TNT file

description: TNT file used in analysis of original data of R&N
DOI: 10.5061/dryad.qg91m/2
title: Data 2 - BPCA PC scores

description: Principal component scores found using BPCA
DOI: 10.5061/dryad.qg91m/3
title: Data 3 - Iterative Imputation PC scores

description: Principal component scores identified using iterative imputation
DOI: 10.5061/dryad.qg91m/4
title: Data 4 - BPCA loadings

description: Loadings on each morphometric character identified using BPCA
DOI: 10.5061/dryad.qg91m/5
title: Data 5 - Iterative Imputation loadings

description: Loadings on each morphometric character identified by iterative imputation
DOI: 10.5061/dryad.qg91m/6
title: Data 6 - BPCA TNT file

description: TNT file used in analysis of PC characters identified using BPCA