cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3619004_d9.v1
title: Additional file 5: of Transcriptional maturation of the mouse auditory forebrain

description: Differential expression in the MG for age group comparisons between P14, P21 and Adult (P14-P21, P14-Adult, P21-Adult). Table S12. Differential expression analyses in the MG comparing P14 with P21 using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S13. Differential expression analyses in the MG comparing P14 with Adult using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S14. Differential expression analyses in the MG comparing P21 with Adult using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank.
DOI: 10.57724/gdc_20240220_dichoso_devices
title: DICHOSO Project: Deployment of autonomous devices in waters of Deception Island, 2024
DOI: 10.6084/m9.figshare.c.3618986_d6.v1
title: Additional file 3: of Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication

description: This file reports mapping the 1568 deletions to QTLs. This file is in the tab delimited format and can be opened using the software Excel. (TXT 1015Â kb)
DOI: 10.6084/m9.figshare.c.3619004_d6.v1
title: Additional file 7: of Transcriptional maturation of the mouse auditory forebrain

description: Differential expression in A1 for age group comparisons between P14, P21 and Adult (P14-P21, P14-Adult, P21-Adult). Table S18. Differential expression analyses in A1 comparing P14 with P21 using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S19. Differential expression analyses in A1 comparing P14 with Adult using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S20. Differential expression analyses in A1 comparing P21 with Adult using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank.
DOI: 10.6084/m9.figshare.c.3619004_d5.v1
title: Additional file 11: of Transcriptional maturation of the mouse auditory forebrain

description: Look-up and plotting tool. This tool supports automated extraction of normalized counts for A1 and MG, and generates a plot of the counts and correlation matrix comparing maturational trajectories between each age group. A list of up to 25 genes can be entered into Column A. Use standard gene names only. Not case sensitive, but omit empty spaces. The normalized counts will populate in columns B â   AU, and the data plotted below (profile plots, correlation matrices). Erase or overwrite gene names to generate a new listing. Counts are extracted from the Normalized Reads tab. This tab is locked and should not be edited.
DOI: 10.6084/m9.figshare.c.3618986_d5.v1
title: Additional file 4: of Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication

description: This file records the relationship between QTLs and rice genes in the same region on the reference chromosome. This file is in the tab delimited format and can be opened using the software Excel. (TXT 2342Â kb)
DOI: 10.6084/m9.figshare.c.3619004_d4.v1
title: Additional file 3: of Transcriptional maturation of the mouse auditory forebrain

description: Differential expression comparing A1 and MG at at P7, P14, P21, and Adult. Table S5. Differential expression analyses comparing MG with A1 at P7 for all genes using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods. Gene listing is given in. Table S6. Differential expression analyses comparing MG with A1 at P14 for all genes using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S7. Differential expression analyses comparing MG with A1 at P21 for all genes using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S8. Differential expression analyses comparing MG with A1 in adult animals for all genes using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank.
DOI: 10.6084/m9.figshare.c.3619004_d3.v1
title: Additional file 6: of Transcriptional maturation of the mouse auditory forebrain

description: Differential expression in A1 for age group comparisons with P7 (P7-Adult, P7-P14, P7-P21). Table S15. Differential expression analyses in A1 comparing P7 with Adult using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S16. Differential expression analyses in A1 comparing P7 with P14 using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S17. Differential expression analyses in A1 comparing P7 with P21 using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank.
DOI: 10.6084/m9.figshare.c.3618998_d4.v1
title: Additional file 4: Table S4. of Systematic analysis of the molecular mechanism underlying atherosclerosis using a text mining approach

description: Potential susceptibility genes for atherosclerosis. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3618983_d7.v1
title: Additional file 5: Table S4. of Identification, characterization and expression analysis of lineage-specific genes within sweet orange (Citrus sinensis)

description: RNA-Seq data of citrus-specific genes (CSGs) in four sweet orange tissues. (XLS 118 kb)
DOI: 10.6084/m9.figshare.c.3618998_d3.v1
title: Additional file 2: Table S2. of Systematic analysis of the molecular mechanism underlying atherosclerosis using a text mining approach

description: Gene ontology analysis. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.c.3619004_d2.v1
title: Additional file 2: Table S1. of Transcriptional maturation of the mouse auditory forebrain

description: Population and quality control data for all A1 and MG samples obtained for total RNA sequencing. For each sample, the following information is provided: region of interest (ROI), age, sex, RNA integrity number (RIN), 28Â s:18Â s ratio, 260/280 ratio. Samples are arranged sequentially by an identifier that is used in all other tables. Table S2. Raw data quality control matrix. Contains information about the sequencing platform, total reads, and sample quality measures. Table S3. Quality control of alignments. For each sample, information about the sequencing platform and mapping details are listed. Table S4. Raw counts of all genes for the 48 samples sequenced.
DOI: 10.6084/m9.figshare.c.3618986_d4.v1
title: Additional file 5: of Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication

description: This file reports the functional annotation of 99,092 DXWR transcripts from the NCBI NR database using the software blast2go. This file is in the tab delimited format and can be opened using the software Excel. (TXT 12649Â kb)
DOI: 10.5281/zenodo.14475715
title: Announcement of the whole genome sequence of Planococcus plakortidis

description: Planococcus plakortidis is a Gram-positive, non-spore-forming, aerobic bacterium commonly isolated from marine environments and recognised for its biotechnological potential, including pigment production with antioxidant and antimicrobial properties. In this study, we present the whole genome sequence of a Planococcus plakortidis strain, unexpectedly isolated from the saline-alkali soil in a garden of the University Of Karachi, Pakistan. Using a BLAST search against the NCBI database, the 16S rRNA sequence shows 99.84% similarity with Planococcus plakortidis AS/ASP. The sequence was assembled to a total size of 3.305 Mb in 39 contigs and an N50 value of 915,220 bases. The genome exhibits a G+C content of 49.88%. The genome data, deposited under BioProject PRJNA1184773, may provide further insight into its metabolic pathways, genetic diversity and biotechnological potential
DOI: 10.5281/zenodo.14475716
title: Announcement of the whole genome sequence of Planococcus plakortidis

description: Planococcus plakortidis is a Gram-positive, non-spore-forming, aerobic bacterium commonly isolated from marine environments and recognised for its biotechnological potential, including pigment production with antioxidant and antimicrobial properties. In this study, we present the whole genome sequence of a Planococcus plakortidis strain, unexpectedly isolated from the saline-alkali soil in a garden of the University Of Karachi, Pakistan. Using a BLAST search against the NCBI database, the 16S rRNA sequence shows 99.84% similarity with Planococcus plakortidis AS/ASP. The sequence was assembled to a total size of 3.305 Mb in 39 contigs and an N50 value of 915,220 bases. The genome exhibits a G+C content of 49.88%. The genome data, deposited under BioProject PRJNA1184773, may provide further insight into its metabolic pathways, genetic diversity and biotechnological potential
DOI: 10.15468/dl.hkzfxv
title: Occurrence Download

description: A dataset containing 140574 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Stachys recta L."
 ]
}

 The dataset includes 140574 records from 1276 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036074-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qmjg7j
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Araucaria hunsteinii K.Schum."
 ]
}

 The dataset includes 133 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028743-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qdhxxr
title: Occurrence Download

description: A dataset containing 3727 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scotopteryx bipunctaria (Denis & Schiffermüller), 1775"
 ]
}

 The dataset includes 3727 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201779-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ht9uks
title: Occurrence Download

description: A dataset containing 9539 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Poecile lugubris (Temminck, 1820)"
 ]
}

 The dataset includes 9539 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010063-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3jgfsh
title: Occurrence Download

description: A dataset containing 110363 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "License is CC0 1.0",
 "Protocol is Darwin Core Archive",
 "Geometry POLYGON((-106.66077 33.74901,-106.38611 31.67863,-104.57336 31.56637,-104.79309 33.7216,-106.66077 33.74901))",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 110363 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028744-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yphg99
title: Occurrence Download

description: A dataset containing 343 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asplenium resiliens Kunze",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 343 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0162433-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jr2u3m
title: Occurrence Download

description: A dataset containing 361 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gaultheria heterophylla (Blume) Zoll. & Moritzi"
 ]
}

 The dataset includes 361 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009984-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5t2nbd
title: Occurrence Download

description: A dataset containing 484 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Switzerland",
 "TaxonKey is Chiroptera"
 ]
}

 The dataset includes 484 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0323808-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ibjp7w
title: Occurrence Download

description: A dataset containing 4713 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Eleutherodactylus planirostris (Cope, 1862)",
 "TaxonKey is Atractosteus tropicus Gill, 1863"
 ]
}

 The dataset includes 4713 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028744-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zd5r3s
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Freycinetia woodlarkensis Huynh"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010096-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.chrqxk
title: Occurrence Download

description: A dataset containing 2202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Urochloa trichopus (Hochst.) Stapf)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2202 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046953-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bm5dm9
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tradescantia subaspera Ker Gawl.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 60 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0174541-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.llerhl
title: Occurrence Download

description: A dataset containing 26231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-98.85406 21.15453,-97.69318 21.15453,-97.69318 22.26707,-98.85406 22.26707,-98.85406 21.15453))",
 "PublishingCountry is Mexico",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 26231 records from 186 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028746-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h3r4yu
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sorubimichthys planiceps (Spix & Agassiz, 1829))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 86 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046954-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4atte
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Mirafra pulpa Friedmann, 1930"
 ]
}

 The dataset includes 105 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009981-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b7dns5
title: Occurrence Download

description: A dataset containing 1602 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Fossil",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Human Observation"
 ]
 },
 "TaxonKey is Acropora cervicornis (Lamarck, 1816)"
 ]
}

 The dataset includes 1602 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028747-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ycry26
title: Occurrence Download

description: A dataset containing 1342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Maianthemum racemosum (L.) Link",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 1342 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0162417-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9hm96e
title: Occurrence Download

description: A dataset containing 7539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000000.0",
 "GadmGid is CHL.10_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 7539 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007192-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3isa1s
title: Occurrence Download

description: A dataset containing 362 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Year 1941-2018",
 {
 "or" : [
 "StateProvince is guerrero",
 "StateProvince is michoacan"
 ]
 },
 "TaxonKey is Ambystomatidae"
 ]
}

 The dataset includes 362 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028747-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhb3ul
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceratozamia miqueliana H.Wendl."
 ]
}

 The dataset includes 83 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047669-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3437m8
title: Occurrence Download

description: A dataset containing 1321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CAN.2_1",
 "TaxonKey is Thymelicus lineola (Ochsenheimer, 1808)"
 ]
}

 The dataset includes 1321 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007200-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.db6xct
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Year 1941-2018",
 "StateProvince is guerrero",
 "TaxonKey is Ambystomatidae"
 ]
}

 The dataset includes 39 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028748-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z74b23
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Yucca filamentosa L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 114 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0162423-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.