cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/zr7vgbcyr2
title: PAD-UFES-20: a skin lesion dataset composed of patient data and clinical images collected from smartphones

description: Summary description - The PAD-UFES-20 dataset was collected along with the Dermatological and Surgical Assistance Program (in Portuguese: Programa de Assistência Dermatológica e Cirurgica - PAD) at the Federal University of Espírito Santo (UFES-Brazil), which is a nonprofit program that provides free skin lesion treatment, in particular, to low-income people who cannot afford private treatment. - The dataset consists of 2,298 samples of six different types of skin lesions. Each sample consists of a clinical image and up to 22 clinical features including the patient's age, skin lesion location, Fitzpatrick skin type, and skin lesion diameter. - The skin lesions are: Basal Cell Carcinoma (BCC), Squamous Cell Carcinoma (SCC), Actinic Keratosis (ACK), Seborrheic Keratosis (SEK), Bowen’s disease (BOD), Melanoma (MEL), and Nevus (NEV). As the Bowen’s disease is considered SCC in situ, we clustered them together, which results in six skin lesions in the dataset, three skin cancers (BCC, MEL, and SCC) and three skin disease (ACK, NEV, and SEK) - All BCC, SCC, and MEL are biopsy-proven. The remaining ones may have clinical diagnosis according to a consensus of a group of dermatologists. In total, approximately 58% of the samples in this dataset are biopsy-proven. This information is described in the metadata. - The images present in the dataset have different sizes because they are collected using different smartphone devices. All images are available in .png format. - The metadata associated with each skin lesion is composed of up to 26 features. All features are available in a CSV document in which each line represents a skin lesion and each column a metadata feature. - In total, there are 1,373 patients, 1,641 skin lesions, and 2,298 images present in the dataset. Each image/sample has a reference to the patient and the skin lesion in the metadata. Ethics statement The dataset was collected along with the Dermatological and Surgical Assistance Program (PAD) of the Federal University of Espírito Santo. The program is managed by the Department of Specialized Medicine and was approved by the university ethics committee (nº 500002/478) and the Brazilian government through Plataforma Brasil (nº 4.007.097), the Brazilian agency responsible for research involving human beings. In addition, all data is collected under patient consent and the patient’s privacy is completely preserved. ____ If you have any question do not hesitate to get in touch with us.
DOI: 10.4121/uuid:08e11c69-5119-497d-8a4a-200a88081f10
title: DSSAT simulation parameters for 'The Madden-Julian Oscillation affects maize yields throughout the tropics and subtropics'

description: Parameters used in the DSSAT crop model for the publication "The Madden-Julian Oscillation affects maize yields throughout the tropics and subtropic" by Anderson et al. (2020)
DOI: 10.6084/m9.figshare.14219258.v1
title: participant_data.tsv

description: Anonymized participant data - The Effect Of Crowding On The Reading Of Program Code For Programmers With Dyslexia
DOI: 10.6084/m9.figshare.16917451.v4
title: Phosphorus in China's forests (updated)

description: This dataset contains phosphorus content and concentration data supporting the results in the paper accepted in Global Change Biology ("Natural forests promote phosphorus retention in soil"). Please contact the corresponding authors for permission to use the data. <br> (updated version, corrections made for sites' coordinates)
DOI: 10.6084/m9.figshare.5128018.v1
title: Supplementary Material for: The Combination of Vascular Endothelial Growth Factor and Stromal Cell-Derived Factor Induces Superior Angiogenic Sprouting by Outgrowth Endothelial Cells

description: Endothelial progenitor cells are being broadly explored for the treatment of ischemic cardiovascular diseases, but their response to molecules commonly used to promote the growth of new blood vessels has not been fully characterized. In this study, angiogenic sprout formation in a 3-dimensional, in vitro model by one type of endothelial progenitor, outgrowth endothelial cells (OECs), was characterized in response to exposure to stromal cell-derived factor (SDF) and vascular endothelial growth factor (VEGF) and then compared to mature endothelial cells. Exposure to SDF alone did not increase angiogenic sprouting in comparison to control media, while a combination of VEGF and SDF demonstrated greater potency than VEGF alone for all cell types. Together, VEGF and SDF reduced the sprout initiation time and maintained sprouting levels over time. In direct competition with mature endothelial cells, OECs preferentially localized to the tip cell position, suggesting an enhanced sprouting potential. Overall, these results reveal the impact of the combination of VEGF and SDF on endothelial cell sprouting, and support the enhanced potential of OECs, as opposed to mature endothelial cells, for treating ischemic diseases.
DOI: 10.17632/ychyv75bgs
title: Solution of few-body problems with the stochastic variational method I. Central forces with zero orbital momentum

description: Abstract This paper presents a Fortran program to solve diverse few-body problems with the stochastic variational method. Depending on the available computational resources the program is applicable for N = 2-3-4-5-6-⋯ -body systems with L = 0 total orbital momentum. The solution with the stochastic variational method is "automatic" and universal. One defines the system (number of particles, masses, symmetry, interaction, etc.) and the program finds the ground state energy and wave function. The examp... Title of program: FBS Catalogue Id: ADGF_v1_0 Nature of problem This computer code solves N = 2 - 3 - 4 - 5 - 6 -..-body problems. The number of particles, symmetry, interaction, etc. are input data and the program can solve various few-body problems. The examples include nuclear (alpha particle: four-body, 6He: six-body), atomic (tdmu- and e+e-e+e-) and subnuclear (the nucleon and the delta in a nonrelativistic quark model) systems. The solutions are accurate for excited states as well, and even the Efimov-states can be studied. Versions of this program held in the CPC repository in Mendeley Data ADGF_v1_0; FBS; 10.1016/S0010-4655(97)00059-3 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.1181983.v4
title: Schroer_and_Wood_2015_JAnat_inhibitory_cascade_v1

description: PREFERRED CITATION: Schroer K and Wood B. 2015. Modeling the dental development of fossil hominins through the inhibitory cascade. Journal of Anatomy, 226: 150–162. DOI: 10.1111/joa.12264 Title: Schroer_and_Wood_2014_JAnat_inhibitory_cascade_v1 Version number: 1 Date (ISO) original data publication: 25/09/14 Dates (ISO) data collection: 01/01/12-01/01/14 Date (ISO) online publication: 24/11/14 Companion manuscript title: "Modeling the dental development of fossil hominins through the inhibitory cascade" Companion manuscript journal: Journal of Anatomy Primary collector of data: Kes Schroer Co-authors: Bernard Wood Research assistants: Kristen Ramirez, Christine Foltz Short description: Mesiodistal and buccolingual diameters of mandibular postcanines from fossil hominins and extant primates. Rows: 281 (header = TRUE) Columns: 13 Empty cell label: NA Variables: ACC, Taxon, Group, Museum, Sex, P4MD, M1MD, M2MD, M3MD, P4BL, M1BL, M2BL, M3BL ==================== ACC: specimen number assigned by the host museum Taxon: genus and species name Group: used to make legends in R, extant primates are grouped by superfamily (choices: cercopithecoid, hominoid) and fossils are grouped by target taxon (Australopithecus, Homo, Paranthropus boisei, or Paranthropus robustus) Museum: AMNH = American Museum of Natural History, NMNH = National Museum of Natural History, Smithsonian Institution, BMNH = Museum of Natural History, London, all fossils are NA Sex: F = female, M = male, all fossils are NA P4MD: mesiodistal diameter of the lower fourth premolar, in millimeters M1MD: mesiodistal diameter of the lower first molar, in millimeters M2MD: mesiodistal diameter of the lower second molar, in millimeters M3MD: mesiodistal diameter of the lower third molar, in millimeters P4BL: buccolingual diameter of the lower fourth premolar, in millimeters M1BL: buccolingual diameter of the lower first molar, in millimeters M2BL: buccolingual diameter of the lower second molar, in millimeters M3BL: buccolingual diameter of the lower third molar, in millimeters
DOI: 10.17632/m6mbsmrr3y
title: Database with references for the location of the south-eastern Africa Iron Age archaeological sites where anthracological analyses were carried out.

description: Distribution of the south-eastern Africa Iron Age archaeological sites where anthracological analyses were carried out (pushpins). The sites close to the Lesotho and South African border are Ha Makotoko, Ntloana Tsoana and Toutle (Lesotho); Twyfelpoort, Mauermanshoek, Roosfontein, Leliehoek and Rose Cottage (South Africa).
DOI: 10.17632/spdyz88rw3
title: Data for: The race is on: Configurations of absorptive capacity, inter-dependence and slack resources for inter-organisational learning in coopetition alliances

description: The attached data consists of N=317 selected coopetition alliances with IDs from the raw sample showing calibrated membership scores for all ten conditions (see first line for condition names) and high learning outcomes (with 0.95 full-in, 0.5 cross-over, 0.05 full-out).
DOI: 10.6084/m9.figshare.19390622.v1
title: Imputated genotyes of salmon

description: The files have been updated. Please check the latest version.
DOI: 10.6084/m9.figshare.25078061.v1
title: Regulatory Compliance Survey Dataset and Survey

description: Survey and Dataset asking questions on respondents perception on their Organization's Regulatory and Security Standard practices.
DOI: 10.6084/m9.figshare.28827887.v1
title: Transição ou superação? Temporalidades do Sistema Territorial Agroecológico (SiTA) de comunidades tradicionais de Fundo de Pasto

description: Um Sistema Territorial Agroecológico – SiTA é produto da sinergia entre atributos ambientais, sociais e culturais, estruturados em escalas e temporalidades. O estudo e conservação do SiTA de Fundo de Pasto – FP são estratégicos diante da intensificação da crise climática, da erosão da agrobiodiversidade e do patrimônio biocultural associado. Este trabalho objetiva discutir as temporalidades do SiTA de FP, enfatizando-se dimensões e atributos que contribuem para os processos de transição agroecológica. Foi realizado Mapeamento Sistemático da Literatura e Estudo de Caso contemplando etnografia e observação direta e participante, com ênfase em FP de duas regionais: a de Senhor do Bonfim e a formada pelos municípios de Curaçá, Uauá e Canudos – CUC, ambas no estado da Bahia. Os resultados indicam que há comunidades de FP em processos de transição agroecológica mais consolidados que outras, avançando para a temporalidade da superação do SiTA, com significativa ampliação de ações em rede.
DOI: 10.6084/m9.figshare.c.3665833_d7.v1
title: Additional file 1: of Genome-wide association analysis of seedling traits in diverse Sorghum germplasm under thermal stress

description: Pearsonâ  s correlation among traits measured with thermal stress application at seedling stage. (XLSX 10Â kb)
DOI: 10.17632/c5kzfxbbb4
title: Data for "Concentration and Competition in the Domestic Credit Market"

description: This research calculates the Herfindahl-Hirschman Index (HHI) and the Five Major Concentration Ratio, as well as estimates the Lerner Indicator of the Brazilian credit market, between 2000 and 2019. For this purpose, public accounting information from financial institutions was used. This information is available on the website of the Central Bank of Brazil, in the database called IF.data (https://www3.bcb.gov.br/ifdata/). The names of the accounting items used as proxies for the variables are shown in Table 2 of the paper. The concentration and competition indices include isolated financial institutions belonging to the banking segment, type b1 and b2, and non-banking institutions, type n1 and b3S. The banking segment type b1 is represented, according to the monetary authority, by commercial banks, multiples with commercial portfolios and savings banks. Multiple banks with no commercial portfolio and investment banks make up the type b2 banking segment. Individual credit unions and non-bank credit institutions are represented by b3S and n1, respectively.
DOI: 10.17632/jz6rsrdzg8
title: Data on public reference ERP-based ecosystem services in India 

description: This dataset provides information on different parameters that are useful for developing ERP systems. This dataset includes eight different parameters related to the Enterprise Resource Planning(ERP) development and identification of challenges faced by the user.
1.	ERP feedback data is important for understanding the challenges of users and improving the various parameters of ERP to increase the utilization system. We here provide comprehensive data on ERP parameters such as Data Availability and Information Quality, ERP Awareness, ERP System Quality, ERP System Security, ERP Service Quality, User Interface, and User Experience.  
2.	ERP researchers and ERP developers can use the data to better understand the user requirements, user challenges, and factors that should count while developing of ERP system.
DOI: 10.17632/zdczt89sjc
title: Data for: Net Ecosystem Carbon Exchange Prediction and Analysis based on Gradient Boosting Regression and Random Forest
DOI: 10.6084/m9.figshare.25689477.v1
title: Data repository for "A decade of China’s air quality monitoring data suggests health impacts are no longer declining"

description: The data used in the article "A decade of China’s air quality monitoring data suggests health impacts are no longer declining". This includes the CNEMC air quality monitoring data, available in an easy-to-use format. It also includes the data and metadata needed to regenerate all the figures from the article. Please see the included readme and contents files for instructions on how to use.
DOI: 10.6084/m9.figshare.8259179.v1
title: Result of Molecular Docking

description: The data upload in this repository is the data get from the in silico experiment
DOI: 10.17632/6ncwjvbrsj
title: Life cycle inventory results for a comparative LCA of Moroccan calcined marl cement, OPC and LC3

description: This is the life cycle inventory (LCI) used to carry out the life cycle assessment calculations for calcined marl cement (CMC), OPC and limestone calcined clay cement (LC3) production in Morocco.
The data gathered to build this dataset was communicated by Moroccan cement plants or taken from existing databases such as Ecoinvent. In each table of the dataset, the source of the data is given. The first sheet of the file provides further information to better understand how the data should be read.
DOI: 10.17632/yxjgxnmkkd
title: 20240926 Staphylococcus aureus Supplementary Data

description: This study highlights the presence of bovine mastitis-related LA-MRSA. High-risk LA-MRSA ST59 lineages were detected at dairy farms, indicating a potential public health risk of transmission of S. aureus between livestock and humans. Therefore, it is necessary to strengthen the continuous monitoring of animals and breeders on dairy farms. Supplementary data supplemented the antibiotic resistance and molecular characteristics of Staphylococcus aureus isolates.
DOI: 10.6084/m9.figshare.17061224.v1
title: Surface and core foraminifera from Mokomoko Inlet, southern New Zealand

description: Foraminifera data (surface and core MKT-18.5) from Mokomoko Inlet, southern New Zealand associated with manuscript Garrett et al., Drivers of 20th century sea-level change in southern New Zealand determined from proxy and instrumental records.<b></b>
DOI: 10.6084/m9.figshare.25102247.v1
title: Supplementary Material for: Deventilation Syndrome in COPD Patients Receiving Long-Term Home Noninvasive Ventilation: A Systematic Scoping Review

description: The treatment of patients with COPD and chronic hypercapnic respiratory failure using noninvasive ventilation (NIV) is well established. A “deventilation syndrome” (DVS) has been described as acute dyspnea after cessation of NIV therapy. A systematic scoping review reporting according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses extension for Scoping Reviews (PRISMA-ScR) searching Embase was conducted in September 2021. A final manual search followed in February 2023. Literature synthesis was blinded using Rayyan by three different reviewers. A total of 2,009 studies were screened. Five studies met the eligibility criteria. Four articles presented original data. Three articles examined potential treatment options. Three studies were prospective; none were randomized. A total of 122 patients were included. DVS was defined differently in all studies. Seventy-four patients were identified to suffer from DVS (48 controls). Patients were evaluated by blood gas analysis, transcutaneous TcCO<sub>2</sub> measurement, spirometry, whole-body plethysmography, respiratory muscle assessments, diaphragmatic electromyography, ultrasound, 6-min walk test, polysomnography, and questionnaires. Treatment approaches studied were minimization of “patient-ventilator asynchrony” (PVA) and use of pursed- lip breathing ventilation. Pathophysiological mechanisms discussed were PVA, high inspiratory positive airway pressure, hyperinflation, respiratory muscle impairment, and increased respiratory rates. Compared with controls, patients with DVS appeared to suffer from more severe airway obstruction, hyperinflation, and PaCO<sub>2</sub> retention; worse exercise test scores; and poorer quality of life. The available evidence does not allow for definite conclusions about pathophysiological mechanisms, ethology, or therapeutic options. Future studies should focus on a consistent definition and possible pathomechanisms.
DOI: 10.6084/m9.figshare.25854445.v2
title: Prevalence and associated factors of suicidal behavior of adolescents in rural Bangladesh

description: This study aims to find out the prevalence and associated factors of suicidal behavior among adolescents aged 11 to 17 years in rural Bangladesh. A cross-sectional study was performed in Lohagara, a rural subdistrict in Narail in southern Bangladesh, where 350 subjects were recruited. The sampling technique was stratified sampling. Students from different classes in school were grouped into sections. There were five classes, and each class consisted of three different sections. Every section comprised fifty students in total. Through simple random sampling, one section from each class was selected primarily, and another two sections were chosen from the rest following the same. The Bengali-translated versions of the Suicidal Behavior-Revised Questionnaire (SBQ-R) and the Depression, Anxiety, and Stress Scale - 21 Items (DASS-21), as well as another structured questionnaire, were used to collect data from participants.
DOI: 10.6084/m9.figshare.26597368.v2
title: EukPhylo part 1 Databases

description: The reference databases for EukPhylo part 1. See the Wiki available on the GitHub (https://github.com/Katzlab/EukPhylo) for more information.
DOI: 10.6084/m9.figshare.28730096.v2
title: Data for the plots in Figures 1–4.

description: Data for the plots in Figures 1–4.
DOI: 10.17632/8gtprdzp38
title: Data for: How Many Games Are We Playing? An Experimental Analysis of Choice Bracketing in Games.

description: Data and analysis for: How Many Games Are We Playing? An Experimental Analysis of Choice Bracketing in Games. by James R. Bland
DOI: 10.17632/yv26tfc5x9
title: High-frequency surface-wave imaging from traffic-induced noise by selecting inline sources

description: Field data sets utilized in this study have been archived in Mendeley Data and include field data of cases 1 and 2.
DOI: 10.6084/m9.figshare.13003196.v1
title: Set 1_S2_filtered_gene

description: Renal artery stenosis (RAS) engenders stenotic-kidney ischemia, dysfunction, and injury, but whether these are mediated by cellular senescence has not been elucidated. Using INK-ATTAC transgenic mice, high-resolution imaging, and unbiased scRNA-sequencing of murine kidneys, the authors identified cellular senescence as an important mechanism of progressive injury triggered in renal epithelial/stromal cells within post-stenotic kidneys. Both P16-specific and broad quercetin/dasatinib interventions to blunt senescence improved renal function and structure, underscoring its central role in the pathogenesis of the disease. Furthermore, this mechanism was conserved in human subjects with RAS. These observations reveal new mechanisms that contribute to the pathogenesis of chronic ischemic renal injury, and support development of senolytic therapy to reduce senescent cell burden and delay renal injury.
DOI: 10.6084/m9.figshare.16734874.v1
title: Data and Code for Sauve et al. 2021 Oecologia Paper

description: Data and Code associated with Sauve et al. 2021 Oecologia paper on environmental correlates of nestling kittiwake growth in the breeding season.<br><b>Four growth datasets are included</b>AlphaUnfedDat - Growth for non-food supplemented first-hatched nestlingsBetaUnfedDat - Growth for non-food supplemented second-hatched nestlingsAlphaFedDat - Growth for food supplemented first-hatched nestlingsBetaFedDat - Growth for food supplemented second-hatched nestlings<br><b>Two environmental datasets</b>SST100 - Average sea-surface temperature in 100km radius around Middleton IslandMiddletonTemp - Air temperature from weather station on Middleton Island<br><b>One R script</b>Example Growth Model Code for Unfed Alpha Kittiwakes - An example of our analysis run for the first-hatched non-food supplemented kittiwake nestlings<br><br><br><br>
DOI: 10.6084/m9.figshare.25898650.v1
title: Replication Package of "A Catalog of Data Smells for Coding Tasks"

description: Large Language Models (LLMs) are increasingly becoming fundamental in supporting software developers in coding tasks. The massive datasets used for training LLMs are often collected automatically, leading to the introduction of data smells. Previous work addressed this issue by using quality filters to handle some specific smells. Still, the literature lacks a systematic catalog of the data smells for coding tasks currently known. This paper presents a Systematic Literature Review (SLR) focused on articles that introduce LLMs for coding tasks. We first extracted the quality filters adopted for training and testing such LLMs, inferred the root problem behind their adoption (data smells for coding tasks), and defined a taxonomy of such smells. Our result highlight discrepancies in the adoption of quality filters between pre-training and fine-tuning stages and across different coding tasks, shedding light on areas for improvement in LLM-based software development support.
DOI: 10.6084/m9.figshare.28270523.v1
title: Comprehensive_MRI

description: Increasing evidence suggests the utility of magnetic resonance imaging (MRI) as animportant technique for the diagnosis of Alzheimer’s disease (AD) and for predicting the onset of thisneurodegenerative disorder.
DOI: 10.6084/m9.figshare.28953446.v1
title: Impact of email category on phishing detection

description: The replication package consists of the questionnaire and related materials:<b>Questionnaire.pdf:</b> Includes demographic questions to gather information about participants and contains 20 <b>Emails Folder</b>: Contains 20 emails (10 phishing and 10 non-phishing) used for the phishing identification.<b>responses.xlsx</b>: Contains the actual responses from the participants in the user study.<b>Impact_of_email_category_analysis_code.py</b>: Contains our analysis of participants' responses.<br>
DOI: 10.17632/jyrw4wrtjr
title: Academic cheating & ChatGPT

description: Including Dataset and Do-file