cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5p19k/1
title: Allen&Miller_SupportingData

description: This is trait size data of Narnia femorata (Coreidae) reared in lab conditions under two different fruit diets. BugID=individual insects ID number. Host=fruit diet, local or novel. Sex=female or male. Traits: PW=pronotum width, HL=head length, BL=beak length, HFL=hind femur length, HFW=hind femur width, HFA=hind femur area, HTA=hind tibia area, FFL=front femur length.
DOI: 10.5061/dryad.6f20s/1
title: Microhabitat availability and fish diet and morphology

description: Spreadsheet 1: showing Sites (coding) and % microhabitat availability. Spreadsheet 2: showing dietary information as well as morphometrics of the focal study fish species across sites
DOI: 10.5061/dryad.6pm50/1
title: Hui Wang, Mingyue Jiang, Shujun Li, CY Hse , CD Jin, FL Sun  and Z Li.-figures and tables-ESM

description: The supplementary file for manuscript RSOS-170516.R1 entitled “Design of cinnamaldehyde amino acids Schiff base compounds based on the quantitative structure activity relationship” contained original data used in this research: The diameter of antifungal inhibition zone of all compounds against two tested fungi, Experimental lgAR versus Calculated lgAR according to the best QSAR model, Grouping results for validation of QSAR model, The validation results of best QSAR models, The synthesis method of new designed compounds, The IR, 1H NMR and MS spectra of two designed compounds.
DOI: 10.5061/dryad.6rj64/1
title: Visser_data_vocal_foragers_silent_crowds_doi101007s002650172397y

description: PW vocalisation data and associated group-level behaviour data. Data is organised per bin (sampling record). Vocal data is given as seconds recorded in each bin. Database used in binomial and multonomial GEE analysis.
DOI: 10.5061/dryad.6t203/1
title: Matthews_et_al_2017.tar

description: Archive containing both raw and processed data files, with a README for both folders and file types.
DOI: 10.5061/dryad.7kv86/1
title: Begging_Feeding

description: Begging and feeding rate of the three burying beetle species Nicrophorus orbicollis, N. pustulatus, and N. vespilloides
DOI: 10.5061/dryad.7p51p/1
title: choose_a_movie_social_prefrence_data_Dubey_et_al
DOI: 10.5061/dryad.7q33j/1
title: Kirschman-Crespi-Warne_Stress development and immunity

description: Viral loads, corticosterone levels, and survival data.
DOI: 10.5061/dryad.8h8q0/1
title: Time series of population abundances

description: This data file includes estimated population abundances (individual per mL) of Daphnia ambigua and Scenedesmus obliquus in multiple microcosm communities.
DOI: 10.5061/dryad.b700h/1
title: Review_revision
DOI: 10.5061/dryad.c6v4p/1
title: Salinity tolerance (LC50) data from Castillo et al.

description: Database on global patterns of salinity tolerance in freshwater organism based on LC50 data collected from the literature.
DOI: 10.5061/dryad.cg389/1
title: functional traits data

description: Functional trait data for nurse and beneficiary species.
DOI: 10.5061/dryad.h1v85/1
title: Supplementary Material

description: This is the Supplementary Material associated with the paper "Joint analysis of cortical area and thickness as a replacement for the analysis of the volume of the cerebral cortex", published in Cerebral Cortex. A pre-print is on biorXiv: http://dx.doi.org/10.1101/074666. To open, download and untar the file, and then open the "index.html" in any web browser.
DOI: 10.5061/dryad.jd523/1
title: Simulated-data_Community-A

description: Simulated data for Community A, derived from response functions in Data S1.
DOI: 10.5061/dryad.jd523/2
title: Simulated-date_Community-B

description: Simulated data for Community B, derived from response functions in Data S1.
DOI: 10.5061/dryad.k6516/1
title: Dataset-file

description: This file includes the data used to analyze: i) the axial scaling of the hydraulic diameter (Dh), the 5th percentile of cell wall reinforcement ((t/b)2), the mean wall thickness of latewood tracheids (CWTLW) and the percent of ray parenchyma (PERPAR); ii) the treatment effect on the axial scaling of the above mentioned functional traits; iii) the functional traits trade-off during ontogeny and under different treatments; iv) the hydraulic efficiency in terms of costs and effects on tree growth. 
Variables are organized in columns and named with the acronyms described in Table 1 and Table 2. 
The first two columns identify the tree and the disc respectively. Every row corresponds to the value of an individual ring.
DOI: 10.5061/dryad.kn8d2/1
title: Monogamy_F100M100_Autosomal_100Iterations

description: Autosomal Distance matrices for monogamy simulations, under restricted dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/10
title: Polygyny_F100M100_Autosomal_100Iterations

description: Autosomal distance matrices for polygyny simulations, under restricted dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/2
title: Monogamy_F100M100_mtDNA_100Iterations

description: mtDNA Distance matrices for monogamy simulations, under restricted dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/3
title: Monogamy_F100M100_YChromosome_100Iterations

description: Y chromosome versus mtDNA distance matrices for monogamy simulations, under restricted dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/4
title: Monogamy_F100M500_Autosomal_100Iterations

description: Autosomal distance matrices for monogamy simulations, under male-biased dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/5
title: Monogamy_F100M500_mtDNA_100Iterations

description: mtDNA distance matrices for monogamy simulations, under male-biased dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/6
title: Monogamy_F100M500_YChromosome_100Iterations
DOI: 10.5061/dryad.kn8d2/7
title: Monogamy_F500M500_Autosomal_100Iterations

description: Autosomal distance matrices for monogamy simulations, under high dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/8
title: Monogamy_F500M500_mtDNA_100Iterations

description: mtDNA distance matrices for monogamy simulations, under high dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.kn8d2/9
title: Monogamy_F500M500_YChromosome_100Iterations

description: Y chromosome versus mtDNA distance matrices for monogamy simulations, under high dispersal. Geographical (GGD) and Genetic (GD) distance matrices are provided for females and males, for 100 simulation iterations (It1-100). Cell A1= # Loci, A2= # Individuals (the remainder of Row #1 can be ignored). Row #3= Individual IDs, Distance matrix data starts in Row #4. The final column = Individual IDs.
DOI: 10.5061/dryad.n26r0/3
title: Mating Data - Paint Method

description: This dataset shows the results of the mating competition experiments when using the bulb duster method of marking the mosquitoes. The trial number (T1-T3) is given, and the ID of the males involved. The number before the decimal point indicates the cage number, and the .1, .2 and .3 indicate the order of the matings within the cage. Those males that do not have a decimal point in their ID number did not mate, and solely the cage number is given.  The diet of the male and the dust that they were marked with is given. Details on whether they mated (Yes) or not (No) is provided. For those males that mated, the females diet and dust type is also given. The wing-length in mm of both the mated and unmated males is also provided.
DOI: 10.5061/dryad.n26r0/4
title: Mating Data - Bulb Duster Method

description: This dataset shows the results of the mating competition experiments when using the bulb duster method of marking the mosquitoes. The trial number (T1-T3) is given, and the ID of the males involved. The number before the decimal point indicates the cage number, and the .1, .2 and .3 indicate the order of the matings within the cage. Those males that do not have a decimal point in their ID number did not mate, and solely the cage number is given.  The diet of the male and the dust that they were marked with is given. Details on whether they mated (Yes) or not (No) is provided. For those males that mated, the females diet and dust type is also given. The wing-length in mm of both the mated and unmated males is also provided.
DOI: 10.5061/dryad.n26r0/5
title: Survival Experiments

description: This dataset shows the results of the survival experiments. For block 1 and 2, the survival data is provided for the high and low diet males that remained virgins (Virgins), and the high and low diet males that were exposed to females (Mated). The day is given and the cup number (1-4). For each day the number of males alive and dead is given, and the % survival.
DOI: 10.5061/dryad.pg570/1
title: example.R

description: Minimal demonstration of the simulation and analysis used in the study.
DOI: 10.5061/dryad.pg570/2
title: functions

description: Minimal demonstration of the simulation and analysis used in the study.
DOI: 10.5061/dryad.pg570/3
title: dat_freq_chaos_const_env

description: Dataset with the frequency of chaos at each simulation time point for different values of dimensionality (number of traits) d.
DOI: 10.5061/dryad.pg570/4
title: dat_chang_env_d70

description: Datasets with results from all simulations of trajectories in 40 different conditions of oscillating optimum for d = 70.
DOI: 10.5061/dryad.qj925/1
title: gbk_Gillia_Snodgrassella
DOI: 10.5061/dryad.rt280/1
title: Fruit production

description: The study was done in a subalpine old-growth spruce forest in Babia Góra National Park in the Western Carpathians (southern Poland). We established a 27-hectare plot representing subalpine spruce forest on the north slope of the Babia Góra massif. From 2000 to 2015, all reproductive trees (n = 242-367) were searched for fruits at the beginning of September.
DOI: 10.5061/dryad.t6j7p/1
title: focal_gall_DRYAD_DATA_AMNAT

description: Mortality and attack rate data for Eurosta.
DOI: 10.5061/dryad.v1k54/10
title: 10_20161006_WT_4EtOH_temp

description: Response of wild-type cells to the onset of 4% ethanol. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 10.
DOI: 10.5061/dryad.v1k54/2
title: 2_20160512_WT_25CCCP

description: Response of wild-type cells to the onset of 25 μM CCCP. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 2.
DOI: 10.5061/dryad.v1k54/3
title: 3_20160527_WT_55CCCP_temp

description: Response of wild-type cells to the onset of 55 μM CCCP. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 3.
DOI: 10.5061/dryad.v1k54/4
title: 4_20160602_WT_DMSO_temp

description: Response of wild-type cells to DMSO vehicle. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 4.
DOI: 10.5061/dryad.v1k54/5
title: 5_20160608_del_rsbP_55CCCP_temp

description: Response of ∆rsbP cells to the onset of 55 μM CCCP. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 5.
DOI: 10.5061/dryad.v1k54/6
title: 6_20170612_WT_60MPA_temp

description: Response of wild-type cells to the onset of 60 μg/ml mycophenolic acid. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 6.
DOI: 10.5061/dryad.v1k54/7
title: 7_20161004_WT_1EtOH_temp

description: Response of wild-type cells to the onset of 1% ethanol. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 7.
DOI: 10.5061/dryad.v1k54/8
title: 8_20161012_WT_2EtOH_temp

description: Response of wild-type cells to the onset of 2% ethanol. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 8.
DOI: 10.5061/dryad.v1k54/9
title: 9_20170309_DU_2EtOH_temp

description: Response of ∆rsbU cells to the onset of 2% ethanol. Representative MTC1920 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 9.
DOI: 10.5061/dryad.vj260/3
title: Male aggression dataset (Fig. 3A-B, Tables A6-A7)

description: This file contains the C. splendens male aggression data in the intruder experiments that were performed in two allopatric and two sympatric populations (Fig. 3A-B, Tables A6-A7).
DOI: 10.5061/dryad.vj260/4
title: Script (R-code) of longevities of C. splendens and C. virgo in the mesocosm experiments

description: This file contains the script (R-code) needed to generate Fig. 2 and the statistical tests in Tables A2-A5, as well as the supporting Fig. D1. Three datafiles (in CSV-format) are uploaded separately, and all of these data come from the mesocosm experiments where species densities- and frequencies were experimentally manipulated in outdoor cages.
DOI: 10.5061/dryad.vj260/5
title: Datafile "Sympatric" from the mesocosm experiments (Fig. 2A)

description: This datafile contains longevities of the two different species (C. splendens and C. virgo) under three different sympatric frequency-treatments and two density-treatments which are shown in Fig. 2A and Table A2. Together with the script with R-code (provided separately), readers should be able replicate the statistical tests in Table A2.
DOI: 10.5061/dryad.vj260/6
title: Datafile "Splendens" in the mesocosm experiments in Fig. 2B and Table A3

description: This datafile contains longevity information from the mesocosm experiments for the C. splendens males, shown in Fig. 2B and Table A3. Script with R-code is provided separately and should be used with this datafile to re-generate the statistical results in Table A3.
DOI: 10.5061/dryad.vj260/7
title: Datafile "Virgo" for the mesocosm experiments on male longevity (Fig. 2C, Tables A4-5)

description: This datafile contains longevity information from the mesocosm experiments for the C. splendens males, shown in Fig. 2C and Table A4-A5. Script with R-code is provided separately and should be used with this datafile to re-generate the statistical results in Table A4-A5.
DOI: 10.5061/dryad.vj260/8
title: Script (R-code) for simulating negative frequency-dependence and ecological drift (Fig. 4)

description: This file contains the R-code needed to run the simulations in Fig. 4A-F and associated Supplemental figures. The code can be modified to vary community size (J), the strength of negative frequency-dependence (NF) and fitness ratio (FR). Each simulation run follows only 10 populations to speed up computing power, but the code can easily be modified to follow more populations, as well as the number of generations to follow. For further details, see Material and Methods in our paper and Vellend (2016; see the reference list in the paper). 

The original code that we have modified in this study can be found here:


https://github.com/aammd/ecotheory/blob/master/vignettes/Box2.Rmd [MacDonald & Vellend. R code accompanying Vellend (2016) The Theory of Ecological Communities. Princeton University Press].
DOI: 10.5061/dryad.0722b/1
title: Supporting Information S1

description: R tutorial for the Bayesian estimation of vital rates
DOI: 10.5061/dryad.0722b/2
title: Yakushima30

description: Sample data file for S1: stem census data in Yakushima Island (four sites) in 1983 and 2013.
DOI: 10.5061/dryad.121sk/1
title: Data_PaternityAnalysis

description: Microsatellite data for all the offspring and adults wood turtle used in the analysis. Data of the first page are sorted by nest. When it was available from the sampling during nesting activity or assignment test, the mother genotype was put with their offspring (in the first row of each offspring group). The second page are the data of every candidate parents used in the assignment test. Offspring sample were collected during nesting season 2006 and 2007.
DOI: 10.5061/dryad.269h9/1
title: Dataset for León-Sánchez et al. Journal of Ecology

description: Data was collected in a field climate change simulation experiment in Aranjuez, in central Spain (40°02′N–3°32′W, 495 m altitude). The dataset includes leaf gas exchange measurements, isotopic C composition, leaf nutrients (P, N), leaf morphological traits, plant biomass, plant survival and mycorrhizal fungi relative abundances.
DOI: 10.5061/dryad.27q57/1
title: Quantifying the attractiveness of broad-spectrum street lights to aerial nocturnal insects

description: A table documenting invertebrates caught in bespoke flight-intercept traps at four different street lights. Data were gathered from 12 field sites in south-west England, UK. The lights were: an unlit control lamp (CON); a light-emitting diode (LED); a high-pressure sodium (HPS); and a metal halide (MEH).
DOI: 10.5061/dryad.300gs/1
title: Biomass of soil microbial communities and enzyme activities in subtropical China

description: Including three times data for three treatment (CK, ammonium addition, nitrate addtion) in subtropical forest soils. Data including carbon, nitrogen and phosphorus hydrolase and oxidase, soil PLFAs and nutrient contents
DOI: 10.5061/dryad.36n7v/1
title: optical_transparency_06_01_17

description: The MATLAB program plots the temperture dependant dispersion data obtained from the 2D and 3D photonics simulation software.
DOI: 10.5061/dryad.36n7v/2
title: Neff_vs_Temp_fs_mode_neffr_1

description: Effective index data for a rise in the ring waveguide temperature over the full ring
DOI: 10.5061/dryad.36n7v/3
title: 0mA_Heater_Currrent_fs_mode_neffr_0

description: Effective and group index for 0mA heater current
DOI: 10.5061/dryad.36n7v/4
title: 5mA_Heater_Currrent_fs_mode_neffr_0

description: Effective and group index for 5mA heater current
DOI: 10.5061/dryad.36n7v/5
title: 7mA_Heater_Currrent_fs_mode_neffr_0

description: Effective and group index for 7mA heater current
DOI: 10.5061/dryad.3j218/25
title: nonrecal_filtered_chr16_final.vcf.gz_norepeat.vcf

description: HiSeqX aDNA vcf, repeats removed, chr16
DOI: 10.5061/dryad.3j218/26
title: nonrecal_filtered_chr17_final.vcf.gz_norepeat.vcf

description: HiSeqX aDNA vcf, repeats removed, chr17
DOI: 10.5061/dryad.3j218/27
title: nonrecal_filtered_chr18_final.vcf.gz_norepeat.vcf

description: HiSeqX aDNA vcf, repeats removed, chr18
DOI: 10.5061/dryad.3j218/28
title: nonrecal_filtered_chr19_final.vcf.gz_norepeat.vcf

description: HiSeqX aDNA vcf, repeats removed, chr19
DOI: 10.5061/dryad.3j218/29
title: nonrecal_filtered_chr20_final.vcf.gz_norepeat.vcf

description: HiSeqX aDNA vcf, repeats removed, chr20
DOI: 10.5061/dryad.3j218/30
title: nonrecal_filtered_chrX_final.vcf.gz_norepeat.vcf

description: HiSeqX chrX vcf file, repeats excluded, diploid genotypes
DOI: 10.5061/dryad.3j218/31
title: nonrecal_filtered_chrX_final.vcf.gz_norepeat_nomalehets.vcf

description: HiSeqX chrX vcf file, repeats excluded, male hets excluded, diploid genotypes
DOI: 10.5061/dryad.3j218/32
title: GenotypeVCFs_noBSQR_filtered_aDNA_only.vcf

description: RADseq aDNA vcf
DOI: 10.5061/dryad.3j218/33
title: GenotypeVCFs_noBSQR_filtered_xDNA_only.vcf

description: RADseq chrX vcf
DOI: 10.5061/dryad.52472/1
title: Keller et al. 2017_JAE_all data

description: Density of juvenile stone crabs, adult stone crabs (Menippe mercenaria), oyster toadfish (Opsanus tau), and small cryptic fishes (gobies (Gobiidae) and blennies (Blenniidae) per block pair over a five-month period in 2012. Comparisons made between HHA (high habitat availability) and LHA (low habitat availability) treatments, and between HNHA (high natural habitat availability) and LHA treatments.

Also, data on the percent of each reef foraged on (µ ± SE) for the a) HHA (high habitat availability) or b) HNHA (high natural habitat availability) patch reefs versus LHA (low habitat availability) patch reefs over a five-month period in 2012.                Lastly, data on the count of fishes video-frame-1 and d) fish bites minute-1 on HHA and LHA treatments during September and October video recordings (SH = sheepshead [Archosargus probatocephalus], BSB = black sea bass [Centropristis striata]; PF = planehead filefish [Stephanolepis hispidus], and TOT represents all fishes combined).
DOI: 10.5061/dryad.72c2g/1
title: Phylogenomic data for saguaro and Pachycereeae

description: Assemblies, annotations, and phylogenomic data sets for analyses of saguaro and Pachycereeae
DOI: 10.5061/dryad.743g3/1
title: Bee foraging data

description: The file reports the performance  of the foraging bees over the 50 visits (0 indicates an error, 1 indicates a correct choice). The first column indicates the scenario (e.i. floral information, consistent information, conflicting information), the second column indicates the task (i.e. Easy or Hard), the third column indicates the individual bee identity, the last column indicates the number of bouts each bee performed to complete the 50 visits. Each line corresponds to a single tested bee.