cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7763328
title: Key triggers of adaptive genetic variability of sessile oak [Q. petraea (Matt.) Liebl.] from the Balkan refugia: outlier detection and association of SNP loci from ddRAD-seq data

description: Knowledge on the genetic composition of <em>Quercus petraea</em> in south-eastern Europe is limited despite the species' significant role in the re-colonisation of Europe during the Holocene, and the diverse climate and physical geography of the region. Therefore, it is imperative to conduct research on adaptation in sessile oak to better understand its ecological significance in the region. While large sets of SNPs have been developed for the species, there is a continued need for smaller sets of SNPs that are highly informative about the possible adaptation to this varied landscape. By using double digest restriction site associated DNA sequencing data from our previous study, we mapped RAD-tag sequences to the <em>Quercus robur</em> reference genome and identified a set of SNPs putatively related to drought stress-response. A total of 179 individuals from eighteen natural populations at sites covering heterogeneous climatic conditions in the southeastern natural distribution range of <em>Q. petraea</em> were genotyped. The detected highly polymorphic variant sites revealed three genetic clusters with a generally low level of genetic differentiation and balanced diversity among them but showed a north–southeast gradient. Selection tests showed nine outlier SNPs positioned in different functional regions. Genotype-environment association analysis of these markers yielded a total of 53 significant associations, explaining 2.4–16.6% of the total genetic variation. Our work exemplifies that adaptation to drought may be under natural selection in the examined <em>Q. petraea</em> populations.
DOI: 10.58119/ulg/uowrsl/fbtpgj
title: gFr-mp-1565-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/nio0tb
title: mp-8703-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/k5nwcs
title: gFr-mp-7938-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/hybcph
title: mp-5479-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/g23rfw
title: gFr-mp-553342-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/tni0bq
title: mp-10547-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/4k5iir
title: mp-10694-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/zduptk
title: mp-7547-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/t9inlk
title: mp-571166-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/55ia8t
title: mp-11917-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/cuyi9p
title: mp-22483-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/quxaok
title: gFr-mp-23350-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/5tdqmf
title: gFr-mp-2920-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/wslewv
title: mp-6951-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/pn8rab
title: gFr-mp-14037-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/v79xdz
title: gFr-mp-504838-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/drilsq
title: gFr-mp-1986-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/ynlo1p
title: mp-3167-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/jyjq7q
title: gFr-mp-8399-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/ptpfvx
title: mp-15685-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/sdkoum
title: gFr-mp-28075-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/r2thmm
title: gFr-mp-567666-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/uf3wys
title: gFr-mp-13109-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/13hcuf
title: mp-569028-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/hbd9yw
title: mp-23485-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/h1l99y
title: mp-22936-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/rng2gr
title: mp-567666-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/dl7jp5
title: gFr-mp-36582-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/l56t7d
title: gFr-mp-10378-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/hw7pey
title: mp-991676-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/olojgx
title: mp-29506-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/vpkhoo
title: mp-8399-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/8nwohp
title: mp-27303-data-per-mode-conduction.dat

description: :unav
DOI: 10.15139/s3/p0nwpu
title: Replication Data for: Response to Lagodny, Jones, Koch and Enns

description: This article presents a short summary of the conclusions we report in a longer manuscript (available in our online supplement material) subjecting Lagodny et al.’s new measure of state policy mood to the same set of face validity and construct validity tests we applied earlier to Enns and Koch’s measure. We encourage readers to read this longer manuscript, which contains not only the conclusions herein, but also the evidence justifying these conclusions, before accepting or rejecting any claims we make. Our results show that the characteristics of Enns and Koch’s measure that led us to be doubtful that it is valid are also present in Lagodny et al.’s new measure—leaving us just as doubtful that Lagodny et al.’s measure is valid. Moreover, the low correlation between Lagodny et al.’s measure and Enns and Koch’s measure, combined with evidence from replications of seven published studies that the two measures frequently yield quite different inferences about the impact of policy mood on public policy, indicate that Lagodny et al.’s claim that both their measure and Enns and Koch’s measure are valid is wrong; either neither measure is valid, or one is valid and the other is not. Moreover, extending the replications to include not only Lagodny et al.’s and Enns and Koch’s measures, but also Berry et al.’s measure and Caughey and Warshaw’s measure of mass economic liberalism, shows that each of the four measures yields a substantive conclusion about the effect of policy mood that is dramatically different than each of the other three measures. This suggests that the goal of developing a measure of state policy mood that would be widely accepted as valid remains elusive.
DOI: 10.58119/ulg/uowrsl/kamrs6
title: mp-23550-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/xqxndt
title: mp-3277-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/7xjsig
title: gFr-mp-7581-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/uo3bam
title: mp-581833-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/xslwu7
title: mp-2853-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/3lcnr8
title: gFr-mp-7604-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/08hazc
title: mp-770932-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/xxxakc
title: mp-14036-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/iihexh
title: gFr-mp-10341-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/8rwg6u
title: mp-8147-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/qbcz4d
title: mp-10550-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/n2uc8d
title: gFr-mp-3163-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/6do00t
title: mp-5072-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/wi38yr
title: mp-998433-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/ig4juf
title: gFr-mp-19799-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/fcfdz7
title: gFr-mp-7233-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/64naxo
title: gFr-mp-541037-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/wnjhj0
title: gFr-mp-2352-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/xdw0xs
title: mp-37153-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/yf9oze
title: mp-8280-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/1tzeam
title: mp-6929-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/eppjrk
title: mp-15704-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/r6hxvw
title: gFr-mp-9570-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/dqbztf
title: mp-14069-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/d7wpxt
title: gFr-mp-10492-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/tvsid1
title: gFr-mp-551203-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/zsxbyv
title: gFr-mp-11123-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/yvjlaq
title: gFr-mp-470-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/8vy1zo
title: mp-989535-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/ltkd4w
title: gFr-mp-989567-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/cvagwg
title: gFr-mp-989535-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/bjonmp
title: gFr-mp-540957-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/bxqwn3
title: mp-22304-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/jbseyt
title: mp-16337-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/qac4j5
title: gFr-mp-3432-conduction.dat

description: :unav
DOI: 10.24400/527896/a01-2023.002
title: SAR images for Sentinel-1 database

description: Synthetic Aperture Radar (SAR) systems such as Sentinel 1 generate several million km2 of ocean imagery each month. Their analysis reveals many metoceanic phenomena, such as the presence of surfactants, sea ice, rain, convection zones or atmospheric fronts. If their detection is possible by an experienced analyst on a limited number of cases, the exploitation of all the SAR measurements remains for the moment impossible without the help of artificial intelligence (Colin et al., 2022, https://doi.org/10.3390/rs14040851). It is the role of this database to provide a set of examples of such detections to be used for their training. It is built as an extension of existing databases (Wang et al., 2019, https://doi.org/10.1002/gdj3.73) by two CLS engineers. Among the medium-term applications targeted are mapping of ocean surface states and a better understanding of air-sea interaction processes.
DOI: 10.58119/ulg/uowrsl/sk8azd
title: gFr-mp-9383-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/mhqlqa
title: mp-8409-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/hsfuid
title: mp-20256-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/6hg3ux
title: mp-570008-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/yoqzaj
title: gFr-mp-979137-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/z6rrsc
title: gFr-mp-8277-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/qzdf3f
title: mp-7566-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/jvjoqp
title: gFr-mp-27420-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/phdeii
title: gFr-mp-9268-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/kzhi1e
title: gFr-mp-23303-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/hvyfvs
title: mp-989514-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/wkrsfy
title: mp-22984-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/4ljvkw
title: mp-29163-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/pw0hjo
title: mp-252-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/fkexoh
title: mp-7631-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/xlrbms
title: mp-22922-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/ykkfbc
title: mp-7482-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/cxh7ct
title: mp-2472-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/y5kjcl
title: gFr-mp-12444-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/amp4cs
title: gFr-mp-22607-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/yjlh1k
title: mp-7375-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/uasjn7
title: gFr-mp-4009-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/mu6dvh
title: gFr-mp-7937-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/xxi0om
title: gFr-mp-23070-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/zz9mix
title: mp-11824-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/kxjqme
title: gFr-mp-9855-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/sicrcy
title: gFr-mp-8446-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/kfvnz0
title: mp-989605-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/eta5ix
title: mp-23818-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/1jdpvu
title: mp-13983-data-per-mode-conduction.dat

description: :unav
DOI: 10.58119/ulg/uowrsl/hosvkk
title: mp-20463-data-per-mode-conduction.dat

description: :unav
DOI: 10.6084/m9.figshare.13341115.v1
title: A case of clubbed down syndrome in broilers

description: This study presents a case of clubbed down syndrome in conventional broilers. During the first week of life, severe growth retardation was observed in approximately 25% of the flock. The growth-retarded chicks weighed only 45 g and showed a typical feather disorder which was most apparent on their abdomen and was defined in literature as typical for clubbed down syndrome. Necropsies, histology, biochemical analysis of blood and liver samples, serology and different PCR tests were performed in broilers to assess the aetiology of the clinical signs that were present in the affected broiler farm. Because of the suspicion of a possible link with the broiler-breeder farms, different investigations including serology, PCR and feed analysis were also performed on these farms. The results suggest that an accidentally excessive amount of calcium and iron in the feed of broiler-breeders, 3 weeks prior to first clinical signs in broilers, led to the development of clubbed down in the offspring, because of a relative Zn-deficiency in broiler-breeders and an absolute Zn-deficiency in the hatching eggs that were produced during this period. This appeared to be a reversible process as no clinical signs were observed in younger offspring of these broiler-breeders after they had consumed more of the new batch of feed. A potential involvement of Astrovirus could not be completely ruled out. This study demonstrates the importance of correct mineral concentrations in broiler-breeder feed and the impact it can have on the development of the offspring.
DOI: 10.6084/m9.figshare.13705398.v2
title: Epidemiology of fowl adenovirus (FAdV) infections in South Korean chickens during 2013–2019 following introduction of FAdV-4 vaccines

description: Fowl adenoviruses (FAdV) are important infectious pathogens responsible for causing substantial economic losses to the poultry industry worldwide. One hundred and forty-six FAdV strains were continuously collected and analysed from 2013 to 2019 to understand the epidemiological change and nature of the virus in South Korea from two different standpoints, before and after the release of multiple commercial FAdV-4 vaccines. Phylogenetic analysis of the hexon loop-1 gene sequences showed that 92 strains belonged to FAdV-C (63%), 35 strains to FAdV-E (24%), 18 strains to FAdV-D (12.3%), and one strain to FAdV-A (0.7%), respectively. We provide evidence that the dominant FAdV serotype has recently changed from FAdV-4 to FAdV-8b, as reflected in the proportion of each serotype in field cases in 2019 (18.5% and 77.8%, respectively). The newly emerged FAdV-8b cluster was significantly noticeable compared to the old FAdV clusters, indicating that the development of a vaccine for FAdV-8b may be necessary. Overall, this new insight into FAdV prevalence provides a foundation for strategic control and the development of efficient vaccines against FAdV cases in chickens in South Korea. <b>RESEARCH HIGHLIGHTS</b>The dominant FAdV serotype in South Korea shifted from FAdV-4 to FAdV-8b in 2013–2019.A new cluster of FAdV-8b has emerged in South Korea, indicating the development of new vaccines. The dominant FAdV serotype in South Korea shifted from FAdV-4 to FAdV-8b in 2013–2019. A new cluster of FAdV-8b has emerged in South Korea, indicating the development of new vaccines.
DOI: 10.6084/m9.figshare.9791915.v1
title: <i>In vitro</i> characterization and genetic diversity of <i>Bordetella avium</i> field strains

description: <i>Bordetella avium</i> (BA) is a respiratory pathogen of particular importance for turkeys. Specific adherence and damage to the respiratory epithelia are crucial steps of the pathogenesis, but knowledge about the mechanisms and the variety of virulence in field strains is limited. We analysed 17 BA field strains regarding their <i>in vitro</i> virulence-associated properties in tracheal organ cultures (TOC) of turkey embryos, and their genetic diversity. The TOC adherence assay indicated that BA field strains differ considerably in their ability to adhere to the tracheal mucosa, while the TOC ciliostasis assay illustrated a high degree of diversity in ciliostatic effects. These two virulence-associated properties were associated with each other in the investigated strains. Three of the investigated strains displayed significantly (<i>P</i> &gt; 0.05) lower <i>in vitro</i> virulence in comparison to other strains. Genetic diversity of BA strains was analysed by core genome multilocus sequence typing (cgMLST). We applied a cgMLST scheme comprising 2667 targets of the reference genome (77.3% of complete genome, BA strain 197N). The results showed a broad genetic diversity in BA field strains but did not demonstrate a correlation between sequence type and virulence-associated properties. The cgMLST analysis revealed that strains with less marked virulence-associated properties had a variety of mutations in the putative filamentous haemagglutinin gene. Likewise, amino acid sequence alignment indicated variations in the protein. The results from our study showed that both adherence and ciliostasis assay can be used for virulence characterization of BA. Variations in the filamentous haemagglutinin protein may be responsible for reduced virulence of BA field strains.
DOI: 10.6084/m9.figshare.9791915
title: <i>In vitro</i> characterization and genetic diversity of <i>Bordetella avium</i> field strains

description: <i>Bordetella avium</i> (BA) is a respiratory pathogen of particular importance for turkeys. Specific adherence and damage to the respiratory epithelia are crucial steps of the pathogenesis, but knowledge about the mechanisms and the variety of virulence in field strains is limited. We analysed 17 BA field strains regarding their <i>in vitro</i> virulence-associated properties in tracheal organ cultures (TOC) of turkey embryos, and their genetic diversity. The TOC adherence assay indicated that BA field strains differ considerably in their ability to adhere to the tracheal mucosa, while the TOC ciliostasis assay illustrated a high degree of diversity in ciliostatic effects. These two virulence-associated properties were associated with each other in the investigated strains. Three of the investigated strains displayed significantly (<i>P</i> &gt; 0.05) lower <i>in vitro</i> virulence in comparison to other strains. Genetic diversity of BA strains was analysed by core genome multilocus sequence typing (cgMLST). We applied a cgMLST scheme comprising 2667 targets of the reference genome (77.3% of complete genome, BA strain 197N). The results showed a broad genetic diversity in BA field strains but did not demonstrate a correlation between sequence type and virulence-associated properties. The cgMLST analysis revealed that strains with less marked virulence-associated properties had a variety of mutations in the putative filamentous haemagglutinin gene. Likewise, amino acid sequence alignment indicated variations in the protein. The results from our study showed that both adherence and ciliostasis assay can be used for virulence characterization of BA. Variations in the filamentous haemagglutinin protein may be responsible for reduced virulence of BA field strains.
DOI: 10.6084/m9.figshare.10008140.v1
title: Unravelling fatty liver haemorrhagic syndrome: 1. Oestrogen and inflammation

description: Previous studies have implicated oestrogen as a factor in the induction of fatty liver haemorrhagic syndrome (FLHS). In this study, a refined laying hen model was employed to permit further investigations. Intramuscular (i.m.) injections of exogenous oestrogen as β-estradiol-17-dipropionate (E<sub>2</sub>) (5 mg/kg BW) were given every 4 days for 20 days to 30-week-old hens fed either <i>ad libitum</i> or with restricted feed intake. Elevated (<i>P </i>2-treated <i>ad libitum</i> fed (EAL) group experienced a higher incidence of FLHS than hens in the E<sub>2</sub>-treated restricted feed intake group, showing that birds with a higher feed intake are more at risk of developing FLHS. Histological examination of livers revealed that hens in the E<sub>2</sub>-treated <i>ad libitum</i> fed group had consistent and severe fat infiltration in the liver, and fat vacuolization within hepatocytes. Fat accumulation and fat droplets were found not only in the cytoplasm of hepatocytes but also in liver sinusoids. White blood cell counts and fibrinogen concentrations were altered (<i>P </i>2 when compared with controls. Plasma fibrinogen concentrations were altered over time, and correlated with white blood cell counts (Pearson’s correlation <i>r</i> = 0.96; <i>P = </i>0.001). Hens treated with E<sub>2</sub> had increased (<i>P 0.01) levels of cholesterol and triglycerides, confirming that E<sub>2</sub> induced hypercholesterolaemia and hypertriglyceridaemia. It was concluded that E<sub>2</sub> successfully induced FLHS in hens, with typical systemic and hepatic events resulting from a disturbance in lipid metabolism and chronic low-grade inflammation.</i>