cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/z7t-j82-8k5
title: Pseudopus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.15304824
title: K2-18b JWST Joint Analysis (NIRISS+NIRSpec+MIRI)

description: Supplementary material for "No detection of DMS or DMDS in the atmosphere of K2-18 b. From a joint analysis of JWST NIRISS, NIRSpec, and MIRI observations" by Luque et al., submitted to A&A Letters (2025).

This repository contains:



Transmission spectra — Reduced transmission spectra for NIRISS/SOSS at R~100 with exoTEDRF; NIRSpec/G395H at R~200 with exoTEDRF, Eureka!, and SPARTA; and MIRI/LRS at R~100 with exoTEDRF, Eureka!, and SPARTA. 

Retrievals — Corner plots and retrieval results (posterior samples and best-fit models). Two analyses are carried out. First, retrievals on the original JExoRES spectra presented in Madhusudhan et al. 2023 and Madhusudhan et al. 2025 using the open-source code PLATON. Second, retrievals on the independent transmission spectra from this work (one from the full exoTEDRF reduction, another from SPARTA's NIRSpec and MIRI reduction together with the NIRISS exoTEDRF reduction) using the SCARLET code (e.g., Benneke & Seager 2012, Piaulet et al. 2023).


For any additional data requests or questions, please contact: rluque@uchicago.edu
DOI: 10.5281/zenodo.15463903
title: K2-18b JWST Joint Analysis (NIRISS+NIRSpec+MIRI)

description: Supplementary material for "Insufficient evidence for DMS and DMDS in the atmosphere of K2-18 b. From a joint analysis of JWST NIRISS, NIRSpec, and MIRI observations" by Luque et al., submitted to A&A Letters (2025).

This repository contains:



Transmission spectra — Reduced transmission spectra for NIRISS/SOSS at R~100 with exoTEDRF; NIRSpec/G395H at R~200 with exoTEDRF, Eureka!, and SPARTA; and MIRI/LRS at R~100 with exoTEDRF, Eureka!, and SPARTA. 

Retrievals — Corner plots and retrieval results (posterior samples and best-fit models). Two analyses are carried out. First, retrievals on the original JExoRES spectra presented in Madhusudhan et al. 2023 and Madhusudhan et al. 2025 using the open-source code PLATON. Second, retrievals on the independent transmission spectra from this work (one from the full exoTEDRF reduction, another from SPARTA's NIRSpec and MIRI reduction together with the NIRISS exoTEDRF reduction) using the SCARLET code (e.g., Benneke & Seager 2012, Piaulet et al. 2023).


For any additional data requests or questions, please contact: rluque@uchicago.edu
DOI: 10.22002/cnz3a-jpd34
title: Agro VirB8-GFP delta VirB8

description: Raw data files of Agro VirB8-GFP delta VirB8
description: <strong>Tilt Series Date:</strong> 2013-07-09</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown at 19C and induced with 200uM AS for 2 days on plates</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-09-8/rawdata/</p>VirB8_deltaVirB80006.mrc,  Tilt Series (Pixel Size 0.42 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-09-8/rawdata/VirB8_deltaVirB80006.mrc"
        > <i class="download icon"></i> Download </a></p>

        VirB8_deltaVirB80006_full.rec,  Reconstruction (Pixel Size 1.68 nm), 516.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-09-8/3dimage_28163/VirB8_deltaVirB80006_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/8vab9-3vy10
title: Hyphomonas session16 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-06-06</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 2°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in 2216 media, 4degree...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-06-17/rawdata/</p>09jun06a_bx823a_052.mrc,  Tilt Series (Pixel Size 0.774 nm), 520.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-06-17/rawdata/09jun06a_bx823a_052.mrc"
        > <i class="download icon"></i> Download </a></p>

        09jun06a_bx823a_052_full.rec,  Reconstruction (Pixel Size 1.548 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-06-17/3dimage_7890/09jun06a_bx823a_052_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/1hvxn-fxz26
title: 1003_deletion

description: Raw data files of 1003_deletion
description: <strong>Tilt Series Date:</strong> 2009-10-06</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -16.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach, IMOD</p>
<strong>Collaborators and Roles:</strong> Cells provided by Arash Komeili, data collected by ZL</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Probably stationary phase</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/1 or R2/2, 10nm gold, 100% humidity</p>
  zla2009-10-06-9_slicer6640.jpg: budding vesicle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-06-9/rawdata/</p>09oct06a_A1003c_008.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-06-9/rawdata/09oct06a_A1003c_008.mrc"
        > <i class="download icon"></i> Download </a></p>

        09oct06a_A1003c_008_part.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-06-9/3dimage_10208/09oct06a_A1003c_008_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.bnetyx
title: Occurrence Download

description: A dataset containing 14134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opiliones",
 "Year 2011-2013",
 "Continent is Europe",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14134 records from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045810-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/8zw18-hmp22
title: Alongum

description: Tprimitia_lysozyme
description: <strong>Tilt Series Date:</strong> 2012-05-20</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-30.0°, 30.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> WesleyChen helped remove layers</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-145/rawdata/</p>trepLys2a0009.mrc,  Tilt Series (Pixel Size 0.95 nm), 842.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-145/rawdata/trepLys2a0009.mrc"
        > <i class="download icon"></i> Download </a></p>

        trepLys2a0009_full.rec,  Reconstruction (Pixel Size 1.95 nm), 412.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-145/3dimage_57007/trepLys2a0009_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/asj3e-3gg88
title: sporulating Bsubtilis MJ007

description: sporulating Bsubtilis MJ007, skinny Bacillus
description: <strong>Tilt Series Date:</strong> 2011-06-14</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> MJ007, ponA null</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> strain from Kit Pogliano at UCSD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-06-14-2/3dimage_25182/</p>cut_full.rec,  Reconstruction (Pixel Size 1.9 nm), 792.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-06-14-2/3dimage_25182/cut_full.rec"
        > <i class="download icon"></i> Download </a></p>

        MJ007_2.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-06-14-2/rawdata/MJ007_2.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.s75876
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Atoconeura kenya, Atoconeura, Atoconeura eudoxia, Atoconeura aethiopica, Atoconeura luxata, Atoconeura biordinata, Allocnemis cyanura, Allocnemis, Trithemis, Elattoneura villiersi, Elattoneura, Thermochoria equivocata, Thermochoria, Thermochoria jeanneli, Ischnura elegans, Ischnura, Selysiothemis nigra, Selysiothemis, Hemistigma affine, Hemistigma, Aciagrion, Sympetrum fonscolombii, Sympetrum, Micromacromia camerunica, Micromacromia, Micromacromia zygoptera, Aethiothemis erythromelas, Aethiothemis, Aciagrion gracile, Aciagrion dondoense, Trithetrum navasi, Trithetrum, Trithetrum congoense, Aciagrion africanum, Trithemis tropicana, Hadrothemis vrijdaghi, Hadrothemis, Hadrothemis scabrifrons, Hadrothemis defecta, Hadrothemis camarensis, Hadrothemis versuta, Hadrothemis infesta, Hadrothemis coacta, Hemicordulia, Diastatomma multilineatum, Diastatomma, Mastigogomphus chapini, Mastigogomphus, Crenigomphus kavangoensis, Crenigomphus, Pseudagrion merina, Pseudagrion, Allocnemis marshalli, Hemicordulia asiatica, Microgomphus, Cordulegaster boltonii algirica, Cordulegaster boltonii, Cordulegaster, Hemicordulia similis, Allocnemis elongata, Orthetrum malgassicum, Orthetrum, Lestinogomphus silkeae, Lestinogomphus, Hemicordulia virens, Microgomphus nyassicus, Paragomphus serrulatus, Paragomphus, Aeshna isoceles, Aeshna, Neurocordulia, Mortonagrion stygium, Mortonagrion, Pyrrhosoma nymphula, Pyrrhosoma, Proplatycnemis pseudalatipes, Proplatycnemis, Neophya rutherfordi, Neophya, Allocnemis superba, Elattoneura vittata, Onychogomphus nigrotibialis, Onychogomphus, Cordulia, Cordulia aenea, Stenocypha molindica, Stenocypha, Platycypha picta, Platycypha, Syncordulia venator, Syncordulia, Syncordulia gracilis, Crocothemis, Metacnemis valida, Metacnemis, Crocothemis sanguinolenta, Crocothemis erythraea, Platycypha rufitibia, Crocothemis saxicolor, Crocothemis striata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((51.4741 -10.5904,51.6872 -10.0924,51.464 -9.7,51.5346 -9.2212,51.4094 -8.8834,51.0293 -8.7096,50.2991 -9.0646,50.2456 -9.492,50.6261 -9.8954,50.5382 -10.1732,50.6846 -10.5267,51.1274 -10.7274,51.4741 -10.5904))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045814-250811113504898/datasets/export for details.
DOI: 10.22002/rhdf1-mjt37
title: Agrobacterium tumefaciens

description: Agrao VG3101 with Ti plasmid
description: <strong>Tilt Series Date:</strong> 2013-11-08</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Elliot Meyerwitz</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Growth in LB</p>
<strong>Sample Preparation:</strong> Vitrobot blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-11-08-30/rawdata/</p>agro_vg31010005.mrc,  Tilt Series (Pixel Size 0.42 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-11-08-30/rawdata/agro_vg31010005.mrc"
        > <i class="download icon"></i> Download </a></p>

        agro_vg31010005_full.rec,  Reconstruction (Pixel Size 0.0 nm), 516.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-11-08-30/3dimage_48918/agro_vg31010005_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/cvx56-3k284
title: Pseudomonas aeruginosa wild type

description: starved for 3h
description: <strong>Tilt Series Date:</strong> 2014-02-08</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Lisa Racki</p>
<strong>Purification / Growth Conditions / Treatment:</strong> starved for 3h</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
  etl2014-02-08-3_slicer4488.jpg: granules
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-02-08-3/rawdata/</p>Paeruginosa_wt_t30003.mrc,  Tilt Series (Pixel Size 0.4 nm), 3.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-02-08-3/rawdata/Paeruginosa_wt_t30003.mrc"
        > <i class="download icon"></i> Download </a></p>

        Paeruginosa_wt_t30003_part111_52.rec,  Reconstruction (Pixel Size 0.0 nm), 356.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/jzjwj-3kw73
title: VSP 080309 MP3

description: Verrucomicrobium spinosum, 09aug04a_080309MP3_Vspplate_026,
description: <strong>Tilt Series Date:</strong> 2009-08-04</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Verrucomicrobium spinosum</p>
<strong>Strain:</strong> DSM 4136</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-08-04-29/rawdata/</p>09aug04a_080309MP3_Vspplate_026.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-08-04-29/rawdata/09aug04a_080309MP3_Vspplate_026.mrc"
        > <i class="download icon"></i> Download </a></p>

        09aug04a_080309MP3_Vspplate_026_part.rec,  Reconstruction (Pixel Size 1.9 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/avczx-e4f18
title: HUVECs infx pNLGFPBglI

description: Raw data files of HUVECs infx pNLGFPBglI
description: <strong>Tilt Series Date:</strong> 2013-06-15</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFTomo</p>
<strong>Collaborators and Roles:</strong> pNLGFPBglI obtained from Irvin Chen (UCLA)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Whole cells were grown on Au finder grids and infected with pNLGFPBglI. Sample frozen 24h post infection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-06-15-10/rawdata/</p>13jun14_C160_2_HUVECspNLBglI24hPI_AT5BT1_0002.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-06-15-10/rawdata/13jun14_C160_2_HUVECspNLBglI24hPI_AT5BT1_0002.mrc"
        > <i class="download icon"></i> Download </a></p>

        13jun14_C160_2_HUVECspNLBglI24hPI_AT5BT1_0002_part121_14.rec,  Reconstruction (Pixel Size 2.0 nm), 534.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.9xtkfj
title: Occurrence Download

description: A dataset containing 2754 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Potentilla indica",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2754 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045813-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/epqg3-wk764
title: Agro C58 22C plate 16h

description: Raw data files of Agro C58 22C plate 16h
description: <strong>Tilt Series Date:</strong> 2014-11-10</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown at 22C and induced for T pili on a 2% agarose pad for 16 hours</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-11-10-51/rawdata/</p>c58_22_pl_16h90004.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
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        c58_22_pl_16h90004_full.rec,  Reconstruction (Pixel Size 0.0 nm), 712.7 MB  
        
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