cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15010944
title: Supplementary Material for: Therapy-Resistant Atypical Downbeat Nystagmus with Vertigo Confined to Specific Head-Hanging Positions: Mapping to the Gravity Vector on a Multi-Axis Turntable

description: Downbeat nystagmus (DBN) observed in head-hanging positions, may be of central or peripheral origin. Central DBN in head-hanging positions is mostly due to a disorder of the vestibulo-cerebellum, whereas peripheral DBN is usually attributed to canalolithiasis of an anterior semicircular canal. Here, we describe an atypical case of a patient who, after head trauma, experienced severe and stereotypic vertigo attacks after being placed in various head-hanging positions. Vertigo lasted 10–15 s and was always associated with a robust DBN. The provocation of transient vertigo and DBN, which both showed no decrease upon repetition of maneuvers, depended on the yaw orientation relative to the trunk and the angle of backward pitch. On a motorized, multi-axis turntable, we identified the two-dimensional Helmholtz coordinates of head positions at which vertigo and DBN occurred (<i>y</i>-axis: horizontal, space-fixed; <i>z</i>-axis: vertical, and head-fixed; <i>x</i>-axis: torsional, head-fixed, and unchanged). This two-dimensional area of DBN-associated head positions did not change when whole-body rotations took different paths (e.g., by forwarding pitch) or were executed with different velocities. Moreover, the intensity of DBN was also independent of whole-body rotation paths and velocities. So far, therapeutic approaches with repeated liberation maneuvers and cranial vibrations were not successful. We speculate that vertigo and DBN in this patient are due to macular damage, possibly an unstable otolithic membrane that, in specific orientations relative to gravity, slips into a position causing paroxysmal stimulation or inhibition of macular hair cells.
DOI: 10.6084/m9.figshare.15010866
title: Primers reverse-transcription quantitative PCR.docx

description: Primers used in reverse-transcription quantitative PCR. Flowering-related genes (<i>CO</i>,<i> FT</i>,<i> FD</i>,<i> SOC1</i>,<i> AP1</i>,<i> LFY</i>, <i>CRY1</i>,<i> CRY2</i>, <i>PHYA</i>, and <i>PHYB</i>) and GA<sub>3 </sub>pathway-related genes (<i>RGA1</i>, <i>GA3</i>, <i>AGL24</i>, and <i>MYB5</i>)
DOI: 10.6084/m9.figshare.15010866.v1
title: Primers reverse-transcription quantitative PCR.docx

description: Primers used in reverse-transcription quantitative PCR. Flowering-related genes (<i>CO</i>,<i> FT</i>,<i> FD</i>,<i> SOC1</i>,<i> AP1</i>,<i> LFY</i>, <i>CRY1</i>,<i> CRY2</i>, <i>PHYA</i>, and <i>PHYB</i>) and GA<sub>3 </sub>pathway-related genes (<i>RGA1</i>, <i>GA3</i>, <i>AGL24</i>, and <i>MYB5</i>)
DOI: 10.5281/zenodo.5112856
title: Martian Dust Storms, Gravity Waves and Transport of Water to the Upper Atmosphere

description: The data for GRL article figures.
DOI: 10.21227/gzx6-sz65
title: Disease diagnosis and recommended remedy

description: With the motivation of no good data sources available for all diseases (from generic to chronic) and their treatment courses, a new dataset is synthesized by exploring several medical websites and resources. It provides the precaution list corresponding to over 1000+ diaganosis. prec\_t.csv : (did, diagnose, pid) = (Disease identifier, Disease name, treatment course). This dataset can be utilized for many machine learning or deep learning based healthcare applications. One such application is developing the recommender systems to recommend the most suitable treatment plan for a given disease.
DOI: 10.6084/m9.figshare.15010902
title: chr1_gb_chip_seq

description: chr1 gb chip seq
DOI: 10.6084/m9.figshare.15010902.v2
title: chr1_gb_chip_seq

description: chr1 gb chip seq
DOI: 10.6084/m9.figshare.15010902.v1
title: chr1_gb_chip_seq

description: chr1 gb chip seq
DOI: 10.6084/m9.figshare.14884065
title: Supporting Data for thesis 'Cell Type Diversity During Sea Urchin Development: A Single Cell Approach to Reveal Different Neuronal Types and Their Evolution'

description: The non-book component contains supplementary data to support Chapters 3, 4, and 5.<br>Moreover, the thesis abstract is attached.<b>Abstract.docx</b><br>Files containing the code (R Scripts) used to run the analyses:<b>Subclustering analysis.rmd</b> (subclustering analysis of neuronal, skeletal, immune and apical plate cell types)<b>Sp_2dpf_clustering analysis.rmd </b>(clustering analysis of the 2 dpf scRNA-seq dataset)<b>Sp_3dpf_clustering analysis.rmd</b> (clustering analysis of the 3 dpf scRNA-seq dataset)<b>Sp_5dpf_clustering analysis.rmd</b> (clustering analysis of the 5 dpf scRNA-seq dataset)<b>Sp_2_3_dpf_clustering analysis.rmd</b> (clustering analysis of the 2 and 3 dpf integrated scRNA-seq datasets)<br>Data discussed in Chapter 3 "Embryonic and larval cell types at a single cell resolution"<br>1.Tables containing all the S. purpuratus genes expressed in different time-points and cell types. The average expression and the average scaled expression is reported. Annotated by WHL ID.<b>Sp_2dpf_all_genes.xlsx</b><b>Sp_3dpf_all_genes.xls</b><b>Sp_5dpf_all_genes.xlsx</b><br>2.Tables containing all the S. purpuratus marker genes (highly differentially expressed genes) in different time-points and cell types. P_value and adjusted P_value are reported. Annotated by WHL ID.<b>Sp_2dpf_marker_genes.xls</b><b>Sp_3dpf_marker_genes.xls</b><b>Sp_5dpf_marker_genes.xls</b><br>3.Table containing additional information on the genes identified in this thesis (NCBI annotation, go annotation, PFAM).<b>Sp_genes_annotation_NCBI_GO_PFAM_FUNCTIONAL.xls</b><br>Data discussed in Chapter 4 "Neuronal diversity during sea urchin development"<br>1.Table containing all the S. purpuratus genes expressed in different neuronal types of the 3dpf pluteus larva. The average expression and the average scaled expression is reported. Annotated by WHL ID.<b><br></b><b>Sp_3 dpf neuronal subclustering_all genes</b><br><br>Data discussed in Chapter 5 "Pancreatic-like cell types in sea urchin"<br>1.Tables containing all the S. purpuratus affected genes after Sp-Pdx1 knockdown at 3dpf pluteus larva and the ones affected only in the PPE neurons. (wild type condition vs. Sp-Pdx1 knockdown larvae at 3 dpf). Annotated by WHL ID.<br><b>Sp-Pdx1 differential RNA-seq.xlsx</b><b>Differentially expressed genes in the PPE neurons.xls</b><br>
DOI: 10.6084/m9.figshare.14884065.v1
title: Supporting Data for thesis 'Cell Type Diversity During Sea Urchin Development: A Single Cell Approach to Reveal Different Neuronal Types and Their Evolution'

description: The non-book component contains supplementary data to support Chapters 3, 4, and 5.<br>Moreover, the thesis abstract is attached.<b>Abstract.docx</b><br>Files containing the code (R Scripts) used to run the analyses:<b>Subclustering analysis.rmd</b> (subclustering analysis of neuronal, skeletal, immune and apical plate cell types)<b>Sp_2dpf_clustering analysis.rmd </b>(clustering analysis of the 2 dpf scRNA-seq dataset)<b>Sp_3dpf_clustering analysis.rmd</b> (clustering analysis of the 3 dpf scRNA-seq dataset)<b>Sp_5dpf_clustering analysis.rmd</b> (clustering analysis of the 5 dpf scRNA-seq dataset)<b>Sp_2_3_dpf_clustering analysis.rmd</b> (clustering analysis of the 2 and 3 dpf integrated scRNA-seq datasets)<br>Data discussed in Chapter 3 "Embryonic and larval cell types at a single cell resolution"<br>1.Tables containing all the S. purpuratus genes expressed in different time-points and cell types. The average expression and the average scaled expression is reported. Annotated by WHL ID.<b>Sp_2dpf_all_genes.xlsx</b><b>Sp_3dpf_all_genes.xls</b><b>Sp_5dpf_all_genes.xlsx</b><br>2.Tables containing all the S. purpuratus marker genes (highly differentially expressed genes) in different time-points and cell types. P_value and adjusted P_value are reported. Annotated by WHL ID.<b>Sp_2dpf_marker_genes.xls</b><b>Sp_3dpf_marker_genes.xls</b><b>Sp_5dpf_marker_genes.xls</b><br>3.Table containing additional information on the genes identified in this thesis (NCBI annotation, go annotation, PFAM).<b>Sp_genes_annotation_NCBI_GO_PFAM_FUNCTIONAL.xls</b><br>Data discussed in Chapter 4 "Neuronal diversity during sea urchin development"<br>1.Table containing all the S. purpuratus genes expressed in different neuronal types of the 3dpf pluteus larva. The average expression and the average scaled expression is reported. Annotated by WHL ID.<b><br></b><b>Sp_3 dpf neuronal subclustering_all genes</b><br><br>Data discussed in Chapter 5 "Pancreatic-like cell types in sea urchin"<br>1.Tables containing all the S. purpuratus affected genes after Sp-Pdx1 knockdown at 3dpf pluteus larva and the ones affected only in the PPE neurons. (wild type condition vs. Sp-Pdx1 knockdown larvae at 3 dpf). Annotated by WHL ID.<br><b>Sp-Pdx1 differential RNA-seq.xlsx</b><b>Differentially expressed genes in the PPE neurons.xls</b><br>
DOI: 10.5281/zenodo.5112877
title: GDC-PANCAN.htseq_counts and associated meta-data no longer available from gdc.xenahubs.net

description: The RNA-seq data and associated meta-data I used for my publications, downloaded from gdc.xenahubs.net but no longer available in this form (i.e. raw counts) from the website.
DOI: 10.5281/zenodo.5112876
title: GDC-PANCAN.htseq_counts and associated meta-data no longer available from gdc.xenahubs.net

description: The RNA-seq data and associated meta-data I used for my publications, downloaded from gdc.xenahubs.net but no longer available in this form (i.e. raw counts) from the website.
DOI: 10.3886/e145381
title: PSID replication data (1999-2017) and codes for paper on "Liquidity Constraints in the U.S. Housing Market" by Corina Boar, Denis Gorea and Virgiliu Midrigan

description: We study the severity of liquidity constraints in the U.S. housing market using alife-cycle model with uninsurable idiosyncratic risks in which houses are illiquid, butagents can extract home equity by refinancing their mortgages. The model implies thatfour-fifths of homeowners are liquidity constrained and willing to pay an average of 13cents to extract an additional dollar of liquidity from their home. Most homeownersvalue liquidity for precautionary reasons, anticipating the possibility of income declinesand the need to make mortgage payments. The model reproduces well the observedresponse of consumption to tax rebates and mortgage relief programs and predicts largewelfare gains from policies aimed at providing temporary liquidity relief to homeowners.
DOI: 10.3886/e145381v1
title: PSID replication data (1999-2017) and codes for paper on "Liquidity Constraints in the U.S. Housing Market" by Corina Boar, Denis Gorea and Virgiliu Midrigan

description: We study the severity of liquidity constraints in the U.S. housing market using alife-cycle model with uninsurable idiosyncratic risks in which houses are illiquid, butagents can extract home equity by refinancing their mortgages. The model implies thatfour-fifths of homeowners are liquidity constrained and willing to pay an average of 13cents to extract an additional dollar of liquidity from their home. Most homeownersvalue liquidity for precautionary reasons, anticipating the possibility of income declinesand the need to make mortgage payments. The model reproduces well the observedresponse of consumption to tax rebates and mortgage relief programs and predicts largewelfare gains from policies aimed at providing temporary liquidity relief to homeowners.
DOI: 10.5281/zenodo.5112900
title: DNA Na salt

description: DNA Na salt
DOI: 10.5281/zenodo.5112899
title: DNA Na salt

description: DNA Na salt
DOI: 10.5281/zenodo.5112902
title: Soy Phospholipids, Asolectin

description: Soy Phospholipids, Asolectin
DOI: 10.5281/zenodo.5112901
title: Soy Phospholipids, Asolectin

description: Soy Phospholipids, Asolectin
DOI: 10.5281/zenodo.5112906
title: Melanin from Sepia officinalis

description: Melanin from Sepia officinalis
DOI: 10.5281/zenodo.5112905
title: Melanin from Sepia officinalis

description: Melanin from Sepia officinalis
DOI: 10.22024/unikent/01.01.182
title: CRUK creating time for research WP3 survey data
DOI: 10.5281/zenodo.5112910
title: S-Lab-System-Group/HeliosData: HeliosData

description: Initial import of trace data and description document.
DOI: 10.5281/zenodo.5112909
title: S-Lab-System-Group/HeliosData: HeliosData

description: Initial import of trace data and description document.
DOI: 10.5281/zenodo.5106087
title: Code and Data: WRF v.3.9 sensitivity to land surface model and horizontal resolution changes over North America

description: Data and code used to obtain results published in Garcia-Garcia et al 2021: WRF v.3.9 sensitivity to land surface model and horizontal resolution changes over North America. Submited to<em> Geosci. Model Dev</em>.
DOI: 10.5281/zenodo.5106086
title: Code and Data: WRF v.3.9 sensitivity to land surface model and horizontal resolution changes over North America

description: Data and code used to obtain results published in Garcia-Garcia et al 2021: WRF v.3.9 sensitivity to land surface model and horizontal resolution changes over North America. Submited to<em> Geosci. Model Dev</em>.
DOI: 10.5281/zenodo.5112911
title: Trialstreamer data

description: Trialstreamer annotated collection of RCTs. This respository contains baseline files (large), and subsequent updates (daily for PubMed, weekly for ICTRP).
DOI: 10.6084/m9.figshare.15015108
title: Supplementary Material for: Plasmalemmal Vesicle-Associated Protein Is Associated with Endothelial Cells Sprouting from the Peribiliary Capillary Plexus in Human Cirrhotic Liver

description: <b><i>Introduction:</i></b> Plasmalemmal vesicle-associated protein (PLVAP) is an endothelial-specific integral membrane glycoprotein that localizes to caveolae and fenestrae in animal models; however, little is known about PLVAP in endothelial cells (ECs) in hepatic sinusoids during liver cirrhosis (LC). Here, we aimed to elucidate PLVAP localization and expression in the human liver during LC progression. <b><i>Methods:</i></b> PLVAP protein expression was detected in specimens from normal control livers and hepatitis C-related cirrhotic livers using immunohistochemistry, Western blotting, and immunoelectron microscopy. <b><i>Results:</i></b> PLVAP mainly localized to the peribiliary capillary plexus (PCP) and was rarely observed in hepatic artery branches and portal venules in control tissue, but was aberrantly expressed in capillarized sinusoids and proliferated capillaries in fibrotic septa within cirrhotic liver tissue. Ultrastructural analysis indicated that PLVAP localized to thin ECs in some caveolae, whereas PLVAP localized primarily to caveolae-like structures and proliferative sinusoid capillary EC vesicles in cirrhotic liver tissue. Western blot analysis confirmed that PLVAP was overexpressed at the protein level in advanced cirrhotic liver tissue. <b><i>Conclusion:</i></b> PLVAP was strongly expressed in the caveolae of proliferated capillaries directly connected with sinusoids linked with the PCP, suggesting that it plays a role in angiogenesis and sinusoidal remodeling in LC.
DOI: 10.6084/m9.figshare.15015108.v1
title: Supplementary Material for: Plasmalemmal Vesicle-Associated Protein Is Associated with Endothelial Cells Sprouting from the Peribiliary Capillary Plexus in Human Cirrhotic Liver

description: <b><i>Introduction:</i></b> Plasmalemmal vesicle-associated protein (PLVAP) is an endothelial-specific integral membrane glycoprotein that localizes to caveolae and fenestrae in animal models; however, little is known about PLVAP in endothelial cells (ECs) in hepatic sinusoids during liver cirrhosis (LC). Here, we aimed to elucidate PLVAP localization and expression in the human liver during LC progression. <b><i>Methods:</i></b> PLVAP protein expression was detected in specimens from normal control livers and hepatitis C-related cirrhotic livers using immunohistochemistry, Western blotting, and immunoelectron microscopy. <b><i>Results:</i></b> PLVAP mainly localized to the peribiliary capillary plexus (PCP) and was rarely observed in hepatic artery branches and portal venules in control tissue, but was aberrantly expressed in capillarized sinusoids and proliferated capillaries in fibrotic septa within cirrhotic liver tissue. Ultrastructural analysis indicated that PLVAP localized to thin ECs in some caveolae, whereas PLVAP localized primarily to caveolae-like structures and proliferative sinusoid capillary EC vesicles in cirrhotic liver tissue. Western blot analysis confirmed that PLVAP was overexpressed at the protein level in advanced cirrhotic liver tissue. <b><i>Conclusion:</i></b> PLVAP was strongly expressed in the caveolae of proliferated capillaries directly connected with sinusoids linked with the PCP, suggesting that it plays a role in angiogenesis and sinusoidal remodeling in LC.
DOI: 10.5281/zenodo.5112920
title: DNase I recombinant enzyme

description: DNase I recombinant enzyme
DOI: 10.5281/zenodo.5112919
title: DNase I recombinant enzyme

description: DNase I recombinant enzyme
DOI: 10.5519/qd.a283q7kw
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (187 records)
DOI: 10.5517/ccdc.csd.cc25fq0c
title: CCDC 2009172: Experimental Crystal Structure Determination

description: Related Article: Poyyamozhi Surendar Anand, Annamalai Sethukumar, Chandran Udhaya Kumar, Balasubramaniam Arul Prakasam|2021|Chem. Data Collect.|35|100746|doi:10.1016/j.cdc.2021.100746
DOI: 10.5517/ccdc.csd.cc25ft7p
title: CCDC 2009272: Experimental Crystal Structure Determination

description: Related Article: Poyyamozhi Surendar Anand, Annamalai Sethukumar, Chandran Udhaya Kumar, Balasubramaniam Arul Prakasam|2021|Chem. Data Collect.|35|100746|doi:10.1016/j.cdc.2021.100746
DOI: 10.21227/zbcj-hb33
title: IEEE Collaboration N entities System Dynamics simulation model

description: IEEE Collaboration N entities System Dynamics simulation model
DOI: 10.1285/i22840753n19p263
title: Diffusion of the utopias. The academy and the media in times of pandemic

description: At the end of the 20th century, the disappearance of the great utopias occurs. Crises are favorable moments to imagine better worlds. Social scientists and humanists - because of their knowledge of reality and its possibilities for change - are privileged to visualize the Covid-19 crisis as an opportunity for change and transfer the orientation of change to all of society. This is a transcendental translation for the consolidation of utopia in the social imaginary. This work explores the rehabilitation of utopia in the exceptional circumstances of the pandemic's start by academics. Doing this identifies, classifies, and analyzes the specific proposals that these thinkers have published in the press to move towards a happy world. We note that the pandemic has not managed to rehabilitate the utopia and that the community's proposals for change are fragmented. We consider that this fragmentation is a symptom of micro-stories, which implies a shift towards micro-routes. However, medium-range utopias proliferate in which messages appear insistently and, in that sense, may be reflected in the social imaginary
DOI: 10.1285/i22840753n19p322
title: Colophon
DOI: 10.25502/v77w-0j93/d
title: Using male and food bait attractants for monitoring of Bactrocera dorsalis and Ceratitis spp. in citrus orchards and B. latifrons in vegetable garden in IITA-Ibadan, Nigeria 

description: This study focused on the diversity, abundance and seasonal patterns of both indigenous and invasive fruit flie species, in addition to identifying the factors influencing their abundance in IITA-Ibadan agroecology, Nigeria. The study sought to provide necessary data to assess the efficiency of male and female attractants on monitoring various fruit fly species.
DOI: 10.5281/zenodo.5112937
title: Data_Figure 3_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Figure 3 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_Fig3.PNG). Corresponding raw data and subsequent data analysis provided as eight files in CSV format (31003A_179400_10.3390_metabo11070442_FJ_AE-BileAcids_3_4_1-3.csv and 31003A_179400_10.3390_metabo11070442_MW_AE-BileAcids_2_3_1-5.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_MW_FJ_AE-BileAcids_2-3_M_1.txt) in txt format, four files containing further related information in PDF format ( 31003A_179400_10.3390_metabo11070442_FJ_AE-BileAcids_3_4_4-6.pdf and 31003A_179400_10.3390_metabo11070442_MW_AE-BileAcids_2_3_6.pdf).
DOI: 10.5281/zenodo.5112936
title: Data_Figure 3_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Figure 3 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_Fig3.PNG). Corresponding raw data and subsequent data analysis provided as eight files in CSV format (31003A_179400_10.3390_metabo11070442_FJ_AE-BileAcids_3_4_1-3.csv and 31003A_179400_10.3390_metabo11070442_MW_AE-BileAcids_2_3_1-5.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_MW_FJ_AE-BileAcids_2-3_M_1.txt) in txt format, four files containing further related information in PDF format ( 31003A_179400_10.3390_metabo11070442_FJ_AE-BileAcids_3_4_4-6.pdf and 31003A_179400_10.3390_metabo11070442_MW_AE-BileAcids_2_3_6.pdf).
DOI: 10.5281/zenodo.5109946
title: Dataset on preferences of rheumatic patients towards EQ-5D-5L health states in Germany

description: The dataset includes preferences of rheumatic patients towards EQ-5D-5L health states in Germany, adjacent codebooks.
DOI: 10.5281/zenodo.5109945
title: Dataset on preferences of rheumatic patients towards EQ-5D-5L health states in Germany

description: The dataset includes preferences of rheumatic patients towards EQ-5D-5L health states in Germany, adjacent codebooks.
DOI: 10.5281/zenodo.5109944
title: Dataset on preferences of patients with diabetes towards EQ-5D-5L health states in Germany

description: The dataset includes data on preferences of patients with diabetes toward EQ-5D-5L health states in Germany and adjacent codebooks.
DOI: 10.5281/zenodo.5109926
title: Dataset on adolescent preferences toward EQ-5D-Y in Germany

description: The dataset includes preferences toward EQ-5D-Y health states valued by adolescents themselves in Germany.
description: EuroQol Group (EQ Project no. 20180510)
DOI: 10.5281/zenodo.5109943
title: Dataset on preferences of patients with diabetes towards EQ-5D-5L health states in Germany

description: The dataset includes data on preferences of patients with diabetes toward EQ-5D-5L health states in Germany and adjacent codebooks.
DOI: 10.5281/zenodo.5109908
title: Dataset on adult preferences toward EQ-5D-Y health states in Germany

description: The dataset include adult preferences towards EQ-5D-Y health states in Germany and adjacent codebook.
description: The study was co-funded by EuroQol Group (EQ Project no. 20180510).
DOI: 10.5281/zenodo.5109925
title: Dataset on adolescent preferences toward EQ-5D-Y in Germany

description: The dataset includes preferences toward EQ-5D-Y health states valued by adolescents themselves in Germany.
description: EuroQol Group (EQ Project no. 20180510)
DOI: 10.5281/zenodo.5109907
title: Dataset on adult preferences toward EQ-5D-Y health states in Germany

description: The dataset include adult preferences towards EQ-5D-Y health states in Germany and adjacent codebook.
description: The study was co-funded by EuroQol Group (EQ Project no. 20180510).