cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3699826_d5
title: Additional file 3: of Suspicion of respiratory tract infection with multidrug-resistant Enterobacteriaceae: epidemiology and risk factors from a Paediatric Intensive Care Unit

description: Enterobacteriaceae distribution. Distribution of Enterobacteriaceae isolates (n = 167) in lower respiratory tract material, MDR (n = 51) vs susceptible (n = 116) organisms during the study period. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3699871_d1.v1
title: Additional file 4: Table S3. of Molecular characterization of invasive capsule null Neisseria meningitidis in South Africa

description: Putative virulence loci (nâ  =â  117) analyzed in 51 carriage and 14 invasive capsule null meningococci, adapted from Schoen et al. [30]. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3699871_d1
title: Additional file 4: Table S3. of Molecular characterization of invasive capsule null Neisseria meningitidis in South Africa

description: Putative virulence loci (nâ  =â  117) analyzed in 51 carriage and 14 invasive capsule null meningococci, adapted from Schoen et al. [30]. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3699973_d1
title: Additional file 1: of Plasticity of host selection by malaria vectors of Papua New Guinea

description: Table S1. Dates of mosquito sampling in each village in the years 2012, 2013 and 2015. Shaded cells represent the dates in which mosquitoes were sampled. Color codes correspond to different villages. Gradient shades represent villages where mosquitoes were sampled simultaneously. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3699982_d1.v1
title: MOESM2 of Developing global maps of insecticide resistance risk to improve vector control

description: Additional file 2. Pyrethroid resistance by subnational area for three time periods; the number of bioassay records for each first order administrative division is given for 1980â  1999, 2000â  2007, and 2008â  2015 together with the actual year range for which data are available in each instance, the number of mosquitoes assayed, and the average mortality as shown in Fig. 2.
DOI: 10.6084/m9.figshare.c.3699982_d1
title: MOESM2 of Developing global maps of insecticide resistance risk to improve vector control

description: Additional file 2. Pyrethroid resistance by subnational area for three time periods; the number of bioassay records for each first order administrative division is given for 1980â  1999, 2000â  2007, and 2008â  2015 together with the actual year range for which data are available in each instance, the number of mosquitoes assayed, and the average mortality as shown in Fig. 2.
DOI: 10.6084/m9.figshare.c.3699985_d1
title: Additional file 1: Table S1. of Parasites of parasites of bats: Laboulbeniales (Fungi: Ascomycota) on bat flies (Diptera: Nycteribiidae) in central Europe

description: Summary of all records of Laboulbeniales associated with bat flies thus far. (XLS 53 kb)
DOI: 10.15468/dl.dw8zh2
title: Occurrence Download

description: A dataset containing 337 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Magallana ariakensis (Fujita, 1913)"
 ]
}

 The dataset includes 337 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038643-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3700969_d7
title: Additional file 3: of Genetic variation of the Toll-like receptors in a Swedish allergic rhinitis case population

description: Sanger sequencing primers. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3700969_d10
title: Additional file 1: of Genetic variation of the Toll-like receptors in a Swedish allergic rhinitis case population

description: Demographics of study populations. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3700978_d2.v1
title: MOESM2 of Change in Anopheles richness and composition in response to artificial flooding during the creation of the Jirau hydroelectric dam in Porto Velho, Brazil

description: Additional file 2. Data used in the analysis.
DOI: 10.6084/m9.figshare.c.3700978_d2.v2
title: MOESM2 of Change in Anopheles richness and composition in response to artificial flooding during the creation of the Jirau hydroelectric dam in Porto Velho, Brazil

description: Additional file 2. Data used in the analysis.
DOI: 10.6084/m9.figshare.c.3700978_d2
title: MOESM2 of Change in Anopheles richness and composition in response to artificial flooding during the creation of the Jirau hydroelectric dam in Porto Velho, Brazil

description: Additional file 2. Data used in the analysis.
DOI: 10.6084/m9.figshare.c.3700987_d1.v1
title: Additional file 2: of Genome-wide association study of rust traits in orchardgrass using SLAF-seq technology

description: (XLSX 181Â kb)
DOI: 10.6084/m9.figshare.c.3700987_d3.v1
title: Additional file 3: of Genome-wide association study of rust traits in orchardgrass using SLAF-seq technology

description: (XLSX 173Â kb)
DOI: 10.6084/m9.figshare.c.3700987_d1
title: Additional file 2: of Genome-wide association study of rust traits in orchardgrass using SLAF-seq technology

description: (XLSX 181Â kb)
DOI: 10.6084/m9.figshare.c.3700987_d4.v1
title: Additional file 6: of Genome-wide association study of rust traits in orchardgrass using SLAF-seq technology

description: (XLSX 50Â kb)
DOI: 10.6084/m9.figshare.c.3700987_d3
title: Additional file 3: of Genome-wide association study of rust traits in orchardgrass using SLAF-seq technology

description: (XLSX 173Â kb)
DOI: 10.6084/m9.figshare.c.3700987_d4
title: Additional file 6: of Genome-wide association study of rust traits in orchardgrass using SLAF-seq technology

description: (XLSX 50Â kb)
DOI: 10.6084/m9.figshare.c.3700987_d7.v1
title: Additional file 4: of Genome-wide association study of rust traits in orchardgrass using SLAF-seq technology

description: (XLSX 79Â kb)
DOI: 10.6084/m9.figshare.c.3700987_d6.v1
title: Additional file 5: of Genome-wide association study of rust traits in orchardgrass using SLAF-seq technology

description: (XLSX 328Â kb)
DOI: 10.6084/m9.figshare.c.3700987_d7
title: Additional file 4: of Genome-wide association study of rust traits in orchardgrass using SLAF-seq technology

description: (XLSX 79Â kb)
DOI: 10.21335/nmdc-1276570474
title: Calibrated ages of sediment core based on foraminifera from the northern Barents Sea

description: Calibrated ages of sediment core based on foraminifera from the northern Barents Sea. This dataset is part of the unpublished article “Deglacial and post-glacial sedimentary processes and environments south of Kvitøya». Benthic foraminifera were collected from 1 cm slices of gravity core KH18-10-08GC1. Determination of radiocarbon ages of 7 foraminifera-samples containing the species Cibicides lobatulus, Elphidium excavatum, Nonionella Labradorica and Cassidulina neoteretis were performed at the LARA laboratory at the University of Bern. All radiocarbon ages were calibrated using the calibration program Calib Rev 8.2 (Stuiver and Reimer, 1993) and the Marine20 calibration curve (Reimer et al., 2020). All the dates have been calibrated for a low depletion Present Day (PD) scenario (Heaton et al., 2023) using a local 〖ΔR〗_Hol^20 value of -61 ± 31 years (Pienkowski et al., 2020). The lowermost date can potentially also be calibrated for a maximal depletion Glacial Scenario (Heaton et al., 2023). This will be discussed further in the unpublished article “Deglacial and post-glacial sedimentary processes and environments south of Kvitøya».

Calibrated ages of sediment core based on foraminifera from the northern Barents Sea. This dataset is part of the unpublished article “Deglacial and post-glacial sedimentary processes and environments south of Kvitøya». Benthic foraminifera were collected from 1 cm slices of gravity core KH18-10-08GC1. Determination of radiocarbon ages of 7 foraminifera-samples containing the species Cibicides lobatulus, Elphidium excavatum, Nonionella Labradorica and Cassidulina neoteretis were performed at the LARA laboratory at the University of Bern. All radiocarbon ages were calibrated using the calibration program Calib Rev 8.2 (Stuiver and Reimer, 1993) and the Marine20 calibration curve (Reimer et al., 2020). All the dates have been calibrated for a low depletion Present Day (PD) scenario (Heaton et al., 2023) using a local 〖ΔR〗_Hol^20 value of -61 ± 31 years (Pienkowski et al., 2020). The lowermost date can potentially also be calibrated for a maximal depletion Glacial Scenario (Heaton et al., 2023). This will be discussed further in the unpublished article “Deglacial and post-glacial sedimentary processes and environments south of Kvitøya».
DOI: 10.6084/m9.figshare.c.3701956_d1.v1
title: Additional file 5: Table S3. of Epigenetic modifications and glucocorticoid sensitivity in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)

description: Differentially methylated sites that relate to GC sensitivity in ME/CFS. Full annotation of 13 sites that relate to GC sensitivity in ME/CFS GC-Hypersensitive subjects (p ≤0.05, Beta-difference ≥ 5%, after 10 000 permutations). (XLSX 48.9 kb)
DOI: 10.6084/m9.figshare.c.3701956_d1
title: Additional file 5: Table S3. of Epigenetic modifications and glucocorticoid sensitivity in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)

description: Differentially methylated sites that relate to GC sensitivity in ME/CFS. Full annotation of 13 sites that relate to GC sensitivity in ME/CFS GC-Hypersensitive subjects (p ≤0.05, Beta-difference ≥ 5%, after 10 000 permutations). (XLSX 48.9 kb)
DOI: 10.6084/m9.figshare.c.3701962_d1.v1
title: Additional file 1: Table S1. of Landscape of genomic diversity and host adaptation in Fusarium graminearum

description: Metrics and statistics of read sequencing and alignment on the reference genome (version RRES V4.0). Figure S1: Minimum and maximum read depth (mean number of reads at the position) calculated along sliding 100Â kb bin windows of the four chromosomes of the RRES reference genome using the six bam files produced after re-sequencing of the French isolates. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3701953_d2.v1
title: Additional file 1: of Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees

description: Community estimators. Values represent averages (±standard deviation) of 15 biological replicates (rhizosphere soil and root samples) and 11 replicates (stem and leaf samples) after normalization to 2000 sequences. Normal distributions of the data were checked with the Shapiro–Wilk test and homoscedasticity of variances was analyzed using either Bartlett’s or the Fligner-Killeens test. Significant differences in the variance of parameters were evaluated with ANOVA, and post hoc comparisons were conducted by the Tukey’s honest significant differences tests. Plant compartment effects show the overall ANOVA results: F(DFn, DFd) and P value. Significant differences at the 95% confidence interval (P
DOI: 10.6084/m9.figshare.c.3701953_d2
title: Additional file 1: of Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees

description: Community estimators. Values represent averages (±standard deviation) of 15 biological replicates (rhizosphere soil and root samples) and 11 replicates (stem and leaf samples) after normalization to 2000 sequences. Normal distributions of the data were checked with the Shapiro–Wilk test and homoscedasticity of variances was analyzed using either Bartlett’s or the Fligner-Killeens test. Significant differences in the variance of parameters were evaluated with ANOVA, and post hoc comparisons were conducted by the Tukey’s honest significant differences tests. Plant compartment effects show the overall ANOVA results: F(DFn, DFd) and P value. Significant differences at the 95% confidence interval (P
DOI: 10.6084/m9.figshare.c.3701962_d1
title: Additional file 1: Table S1. of Landscape of genomic diversity and host adaptation in Fusarium graminearum

description: Metrics and statistics of read sequencing and alignment on the reference genome (version RRES V4.0). Figure S1: Minimum and maximum read depth (mean number of reads at the position) calculated along sliding 100Â kb bin windows of the four chromosomes of the RRES reference genome using the six bam files produced after re-sequencing of the French isolates. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3701962_d2.v1
title: Additional file 8: Table S6. of Landscape of genomic diversity and host adaptation in Fusarium graminearum

description: Annotation of genes previously predicted to belong to secondary metabolite clusters. Table S7: Summary of known Tri genes implicated in trichothecene of type B (TCTB) production. Table S8: Annotation of Tri genes and surrounding sequences according to the polymorphism detected during this analysis. (XLSX 122 kb)
DOI: 10.6084/m9.figshare.c.3701962_d2
title: Additional file 8: Table S6. of Landscape of genomic diversity and host adaptation in Fusarium graminearum

description: Annotation of genes previously predicted to belong to secondary metabolite clusters. Table S7: Summary of known Tri genes implicated in trichothecene of type B (TCTB) production. Table S8: Annotation of Tri genes and surrounding sequences according to the polymorphism detected during this analysis. (XLSX 122 kb)
DOI: 10.6084/m9.figshare.c.3701956_d9
title: Additional file 4: Table S2. of Epigenetic modifications and glucocorticoid sensitivity in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)

description: High confidence differentially methylated sites according to Dexamethasone assay subgroups. Differentially methylated sites between the 3 different subgroups (ME/CFS GC-Hypersensitive, ME/CFS GC-Typical, and Healthy Controls) from the Dexamethasone assay (p ≤0.05, Beta-difference ≥ 5%, after 10 000 permutations). (XLSX 2.88 mb)
DOI: 10.6084/m9.figshare.c.3701956_d10.v1
title: Additional file 7: Table S4. of Epigenetic modifications and glucocorticoid sensitivity in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)

description: High confidence epigenetic biomarkers for ME/CFS. Epigenetic loci that relate to general ME/CFS pathology (p ≤ 0.05, Beta-difference ≥ 5%, after 10 000 permutations). (XLSX 543 kb)
DOI: 10.6084/m9.figshare.c.3701986_d1.v1
title: MOESM2 of Integrating enzyme fermentation in lignocellulosic ethanol production: life-cycle assessment and techno-economic analysis

description: Additional file 2. Aspen Plus data for the results of mass and energy balances. The overall process is shown in the first Excel sheet, and the hierarchies (PRETREAT, YC-E-SSF, DISTILL, EVP-SEP, DRYING, COMBUST) are in the subsequent sheets.
DOI: 10.6084/m9.figshare.c.3701968_d7
title: Additional file 5: of ITIH5 mediates epigenetic reprogramming of breast cancer cells

description: Primer sequences and reaction conditions for RT-PCR experiments. This table illustrates the sequences of all primers used in this study for RT-PCR analysis. (XLS 28Â kb)
DOI: 10.6084/m9.figshare.c.3701956_d10
title: Additional file 7: Table S4. of Epigenetic modifications and glucocorticoid sensitivity in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)

description: High confidence epigenetic biomarkers for ME/CFS. Epigenetic loci that relate to general ME/CFS pathology (p ≤ 0.05, Beta-difference ≥ 5%, after 10 000 permutations). (XLSX 543 kb)
DOI: 10.6084/m9.figshare.c.3701986_d1
title: MOESM2 of Integrating enzyme fermentation in lignocellulosic ethanol production: life-cycle assessment and techno-economic analysis

description: Additional file 2. Aspen Plus data for the results of mass and energy balances. The overall process is shown in the first Excel sheet, and the hierarchies (PRETREAT, YC-E-SSF, DISTILL, EVP-SEP, DRYING, COMBUST) are in the subsequent sheets.
DOI: 10.6084/m9.figshare.c.3701980_d5.v1
title: MOESM2 of Medical Subject Heading (MeSH) annotations illuminate maize genetics and evolution

description: Additional file 2 R-Markdown file including script and results of MeSH and GO analysis on maize improvement genes.
DOI: 10.6084/m9.figshare.c.3701980_d5
title: MOESM2 of Medical Subject Heading (MeSH) annotations illuminate maize genetics and evolution

description: Additional file 2 R-Markdown file including script and results of MeSH and GO analysis on maize improvement genes.
DOI: 10.6084/m9.figshare.c.3701980_d6.v1
title: MOESM1 of Medical Subject Heading (MeSH) annotations illuminate maize genetics and evolution

description: Additional file 1 R-Markdown file including script and results of MeSH and GO analysis on maize domestication genes.
DOI: 10.6084/m9.figshare.c.3701980_d6
title: MOESM1 of Medical Subject Heading (MeSH) annotations illuminate maize genetics and evolution

description: Additional file 1 R-Markdown file including script and results of MeSH and GO analysis on maize domestication genes.
DOI: 10.6084/m9.figshare.c.3703330_d1.v1
title: Additional file 1: of Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles

description: Orthoscape-1.0. The plugin itself. (JAR 105 kb)
DOI: 10.6084/m9.figshare.c.3703330_d1
title: Additional file 1: of Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles

description: Orthoscape-1.0. The plugin itself. (JAR 105 kb)
DOI: 10.6084/m9.figshare.c.3703330_d2.v1
title: Additional file 3: of Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles

description: Reports. 7z archive containing the Orthoscape reports example. (7Z 381 kb)
DOI: 10.6084/m9.figshare.c.3703330_d2
title: Additional file 3: of Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles

description: Reports. 7z archive containing the Orthoscape reports example. (7Z 381 kb)
DOI: 10.6084/m9.figshare.c.3704473_d2.v1
title: Additional file 6: of Conserved patterns of integrated developmental plasticity in a group of polyphenic tropical butterflies

description: Raw dataset used in this study. (XLSX 581Â kb)
DOI: 10.6084/m9.figshare.c.3704473_d2
title: Additional file 6: of Conserved patterns of integrated developmental plasticity in a group of polyphenic tropical butterflies

description: Raw dataset used in this study. (XLSX 581Â kb)
DOI: 10.6084/m9.figshare.c.3704467_d4.v1
title: Additional file 1: of The Echinococcus canadensis (G7) genome: a key knowledge of parasitic platyhelminth human diseases

description: Table of metrics and annotations. 1.1 Metrics summary table for assemblies obtained by different assemblers for the genomic E. canadensis (G7) NGS reads. Only contigs &gt; 1000 bp are considered. DBG-de Bruijn graph; PDBG- Paired de Bruijn graphs. 1.2 Mitochondrial genome. 1.3 E. canadensis (G7) gene identifier and annotation, 1.4 Interpro and GO annotation; 1.5 tRNA annotation, 1.6 rRNA annotation; 1.7 miRNA annotation; 1.8 Repetitive DNA 1.9 Repetitive Genome coordinates. 1.10 Percentage of syntenic genes among Echinoccocus species; 1.11 Metazoan taxa used for OrthoMCL analysis; 1.12 Orthologous gene groups 1.13 Cestode orthology groups; 1.14 Echinococcus specific orthology groups 1.15 E. canadensis (G7) proteins ID from Echinococcus specific orthology group. 1.16 Expanded family proteins in the genus Echinococcus. 1.17 Previously described drug targets in Echinococcus; 1.18 V-ATPase; 1.19 Peptide hormone; 1.20 Dolichol- phosphate mannosyl transferase (DPM) enzyme;1.21 Zinc finger domain containing protein. (XLS 5476 kb)
DOI: 10.6084/m9.figshare.c.3704467_d4
title: Additional file 1: of The Echinococcus canadensis (G7) genome: a key knowledge of parasitic platyhelminth human diseases

description: Table of metrics and annotations. 1.1 Metrics summary table for assemblies obtained by different assemblers for the genomic E. canadensis (G7) NGS reads. Only contigs &gt; 1000 bp are considered. DBG-de Bruijn graph; PDBG- Paired de Bruijn graphs. 1.2 Mitochondrial genome. 1.3 E. canadensis (G7) gene identifier and annotation, 1.4 Interpro and GO annotation; 1.5 tRNA annotation, 1.6 rRNA annotation; 1.7 miRNA annotation; 1.8 Repetitive DNA 1.9 Repetitive Genome coordinates. 1.10 Percentage of syntenic genes among Echinoccocus species; 1.11 Metazoan taxa used for OrthoMCL analysis; 1.12 Orthologous gene groups 1.13 Cestode orthology groups; 1.14 Echinococcus specific orthology groups 1.15 E. canadensis (G7) proteins ID from Echinococcus specific orthology group. 1.16 Expanded family proteins in the genus Echinococcus. 1.17 Previously described drug targets in Echinococcus; 1.18 V-ATPase; 1.19 Peptide hormone; 1.20 Dolichol- phosphate mannosyl transferase (DPM) enzyme;1.21 Zinc finger domain containing protein. (XLS 5476 kb)
DOI: 10.6084/m9.figshare.c.3704485_d1.v1
title: MOESM2 of Estimating the prevalence of dementia using multiple linked administrative health records and captureâ  recapture methodology

description: Additional file 2. Dementia prevalence and incidence by single year of age (dataset).
DOI: 10.6084/m9.figshare.c.3704485_d1
title: MOESM2 of Estimating the prevalence of dementia using multiple linked administrative health records and captureâ  recapture methodology

description: Additional file 2. Dementia prevalence and incidence by single year of age (dataset).
DOI: 10.6084/m9.figshare.c.3704551_d1.v1
title: Additional file 4: Table S3. of Metallothionein 1H (MT1H) functions as a tumor suppressor in hepatocellular carcinoma through regulating Wnt/Î˛-catenin signaling pathway

description: The clinical data of patients with low or high MT1H expression. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3704551_d1
title: Additional file 4: Table S3. of Metallothionein 1H (MT1H) functions as a tumor suppressor in hepatocellular carcinoma through regulating Wnt/Î˛-catenin signaling pathway

description: The clinical data of patients with low or high MT1H expression. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3704551_d2.v1
title: Additional file 1: Table S1. of Metallothionein 1H (MT1H) functions as a tumor suppressor in hepatocellular carcinoma through regulating Wnt/Î˛-catenin signaling pathway

description: Gene sets downloaded from the GSEA. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3704551_d2
title: Additional file 1: Table S1. of Metallothionein 1H (MT1H) functions as a tumor suppressor in hepatocellular carcinoma through regulating Wnt/Î˛-catenin signaling pathway

description: Gene sets downloaded from the GSEA. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3704551_d4.v1
title: Additional file 2: Table S2. of Metallothionein 1H (MT1H) functions as a tumor suppressor in hepatocellular carcinoma through regulating Wnt/Î˛-catenin signaling pathway

description: The clinical data of patients analyzed in Fig.Â 1a. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3704551_d4
title: Additional file 2: Table S2. of Metallothionein 1H (MT1H) functions as a tumor suppressor in hepatocellular carcinoma through regulating Wnt/Î˛-catenin signaling pathway

description: The clinical data of patients analyzed in Fig.Â 1a. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3704560_d2.v1
title: Additional file 2 of BBCAnalyzer: a visual approach to facilitate variant calling

description: Supplement_2. Scripts and documentation of the web application â  BBCAnalyzerâ  . (ZIP 709 kb)
DOI: 10.6084/m9.figshare.c.3704560_d2
title: Additional file 2 of BBCAnalyzer: a visual approach to facilitate variant calling

description: Supplement_2. Scripts and documentation of the web application â  BBCAnalyzerâ  . (ZIP 709 kb)
DOI: 10.6084/m9.figshare.c.3704602_d1.v1
title: Additional file 1: Table S1. of Differential Regulation of Starch-synthetic Gene Expression in Endosperm Between Indica and Japonica Rice Cultivars

description: List of primers used for expression analysis. (XLSX 31 kb)