cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1178347.v1
title: Lab 2: Techniques & data: field training with plants (traits, transects, and quadrats) DATASET 1

description: To measure plant diversity in locations around campus, n = 25 quadrats (1m x 1m) were randomly placed in the grasslands around Stong Pond at York University (43°46'13.2"N 79°30'25.9"W) on September 23rd 2014 from approximately 4:00pm to 4:30pm. The weather was party cloudy with a temperature between 20 and 25 degrees Celsius. To begin the sampling procedure, the first quadrat was randomly placed in an area along the grassland boundary. Subsequent quadrats were randomly sampled by walking 5-10 steps in a random direction from the last quadrat placed until another boundary of the grassland was reached. Once a boundary was reached a new sample area in the grassland was randomly chosen by walking 30m from the previous sample area and the process was repeated until n=25 plots were sampled. The total number of plants along with the number of species, vegetation coverage and grass coverage were estimated for each sample. Number of plants were counted by observing the amount of unique stems in the sample. Species were differentiated based on morphological characterstics using an identification key. Coverage was estimated using the observed percentages of the total sample area occupied by the plants of interest and grass, respectively. At the time of sampling, the most abundant species included the following: Common Milkweed (Asclepias syriaca), Canadian Goldenrod (Solidago canadensis) and Late Purple Aster (Aster prenanthoides). Note: Definitions of variables are located in column C of the Meta sheet
DOI: 10.6084/m9.figshare.1178341
title: Maple tree: Adults vs sapplings

description: Adult maple trees and sappling maple trees
DOI: 10.6084/m9.figshare.1178348.v1
title: Modeling elastic wave propagation using PyOpenCL

description: This work presents an implementation of elastic wave propagation using finite differences to model 2D anisotropic materials and to simulate sonic waves along a borehole in a heterogeneous formation (in cylindrical coordinates) accelerated by using the new parallel computing devices (PCDs). For that purpose we use the industry open standard Open Computing Language (OpenCL) and an open-source toolkit called PyOpenCL. We describe the code and give a performance test in terms of speed using six different computing devices under different operating systems. A maximum speedup factor over 34.2, using the GPU is attained when compared with the execution of the same program in parallel using a CPU quad-core. To provide the scientific community with an open tool for numerical simulation of elastic wave propagation that runs on the PCDs, the full implementation of both problems is included as an open source.
DOI: 10.6084/m9.figshare.1178338
title: Gaussian Job Archive for C15H21NOS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1178339
title: Gaussian Job Archive for C15H21NOS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1178342.v1
title: Pre-determinant factors that may be affecting academics.

description: Gender: The gender of the individual, M stands for male, and F stands for female.<br>Background: The cultural background that the individual identifies with.<br>Major: The program that the individual is enrolled in York Univsersity as of now. Method: Random individuals were chosen for the questions to be verbally asked. Gender was observed visually of the individuals.<br>The location was in the collabatory in Scott Library, York University. The data was collected in 15 minutes from the individuals sitting in the collabatory. Groups of students or individual students were approached for this study.<br>The students were asked what program they were currently enrolled in. The data could be skewed by program switches.<br>Data was collected by 4 students and gathered together to create this set. Each student was assigned to approach a total of 7 people for this study.<br>The purpose of this study was to determine whether gender and cultural background can predetermine the program these individuals are most likley to be enrolled in.<br>Study was conducted by: Hira, Hamza, Sahra, Melanie on September 18, 2014 at around 3 PM.
DOI: 10.6084/m9.figshare.1178338.v1
title: Gaussian Job Archive for C15H21NOS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1178339.v1
title: Gaussian Job Archive for C15H21NOS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1178313
title: Effects of Breakfast and Cellphone use (or lack of)

description: Data collected about how tired students and teachers at York University are during the afternoon, depending on whether or not they had breakfast this morning and if they are in proximity to a cellphone.
DOI: 10.6084/m9.figshare.1178341.v2
title: Maple tree: Adults vs sapplings

description: Adult maple trees and sappling maple trees
DOI: 10.6084/m9.figshare.1178341.v1
title: Maple tree: Adults vs sapplings

description: Adult maple trees and sappling maple trees
DOI: 10.6084/m9.figshare.1178080
title: Ecology

description: Observations and data collected at York University in the Scott library regarding students gender, major and background.
DOI: 10.6084/m9.figshare.1178313.v1
title: Effects of Breakfast and Cellphone use (or lack of)

description: Data collected about how tired students and teachers at York University are during the afternoon, depending on whether or not they had breakfast this morning and if they are in proximity to a cellphone.
DOI: 10.6084/m9.figshare.1177992
title: Alignments used for Chapter 6

description: Alignments, either nucleotide or amino acid, are provided for COI, 18S, 28S, and the nuclear genes 686 and 1054.
DOI: 10.6084/m9.figshare.1178003
title: Intro Ecology Practice Lab

description: Viewing the relationship between eye colour and birth place.
DOI: 10.6084/m9.figshare.1178080.v1
title: Ecology

description: Observations and data collected at York University in the Scott library regarding students gender, major and background.
DOI: 10.6084/m9.figshare.1177991
title: Ecology BIOL2050 Lab Section 01: Abundance in the Grassland

description: Vicky Luu. Quartrats in the Grassland (dataset 1), Group 2.
DOI: 10.6084/m9.figshare.1178002
title: Trees generated for Chapter 6

description: RAxML and BEAST trees generated for Chapter 6. The alignments use differ in the combination of amino acid and nucleotide alignments used but also which topological constraints were applied (i.e. none, genus, family, or order).
DOI: 10.6084/m9.figshare.1178003.v1
title: Intro Ecology Practice Lab

description: Viewing the relationship between eye colour and birth place.
DOI: 10.6084/m9.figshare.1177992.v1
title: Alignments used for Chapter 6

description: Alignments, either nucleotide or amino acid, are provided for COI, 18S, 28S, and the nuclear genes 686 and 1054.
DOI: 10.6084/m9.figshare.1178002.v1
title: Trees generated for Chapter 6

description: RAxML and BEAST trees generated for Chapter 6. The alignments use differ in the combination of amino acid and nucleotide alignments used but also which topological constraints were applied (i.e. none, genus, family, or order).
DOI: 10.6084/m9.figshare.1177976
title: Geochemistry and petrogenesis of mafic-ultramafic rocks from the Central Indian Ridge, latitude 8°–17° S: denudation of mantle harzburgites and gabbroic rocks and compositional variation of basalts

description: This study investigates the formation of lower oceanic crust and geochemical variations of basalts along the Central Indian Ridge (CIR, lat. 7°45′–17°10′ S). Harzburgites, various gabbroic cumulates, medium- to fine-grained oxide gabbros, diabases, and pillow basalts were recovered by dredging from segment ends such as ridge-transform intersections (RTIs), non-transform discontinuities (NTDs), and transform offset areas. The occurrence of both harzburgites and gabbroic rocks with minor basalts at all segments ends, and leucogabbro intrusive into harzburgite at the 12°45′ S NTD indicates that oceanic crust at segment ends exposes mantle-derived harzburgites and gabbroic intrusions with a thin basaltic cover due to sparse magmatic activity. Basalts collected along the entire ridge show wide compositional variations between N (normal)- and E (enriched)-mid-ocean ridge basalt (MORB). T (transitional)-MORBs with enriched affinities are more prominent than N-MORBs. There is no tendency of enrichment towards specific directions. (La/Sm)<sub>N</sub> variations in MORB along the CIR (8°–21°S) fluctuates at a regional scale with local high positive anomalies reflecting compositional heterogeneity of the sub-CIR mantle domain.
DOI: 10.6084/m9.figshare.1177986
title: BJET Dataset 2014

description: Badging data and associated files from BJET Special Issue. Data collected from 44 undergraduate students at the University of Central Florida.
DOI: 10.6084/m9.figshare.1177991.v1
title: Ecology BIOL2050 Lab 01: Abundance in the Grassland

description: Vicky Luu. Quartrats in the Grassland (dataset 1), Group 2.
DOI: 10.6084/m9.figshare.1177976.v2
title: Geochemistry and petrogenesis of mafic-ultramafic rocks from the Central Indian Ridge, latitude 8°–17° S: denudation of mantle harzburgites and gabbroic rocks and compositional variation of basalts

description: This study investigates the formation of lower oceanic crust and geochemical variations of basalts along the Central Indian Ridge (CIR, lat. 7°45′–17°10′ S). Harzburgites, various gabbroic cumulates, medium- to fine-grained oxide gabbros, diabases, and pillow basalts were recovered by dredging from segment ends such as ridge-transform intersections (RTIs), non-transform discontinuities (NTDs), and transform offset areas. The occurrence of both harzburgites and gabbroic rocks with minor basalts at all segments ends, and leucogabbro intrusive into harzburgite at the 12°45′ S NTD indicates that oceanic crust at segment ends exposes mantle-derived harzburgites and gabbroic intrusions with a thin basaltic cover due to sparse magmatic activity. Basalts collected along the entire ridge show wide compositional variations between N (normal)- and E (enriched)-mid-ocean ridge basalt (MORB). T (transitional)-MORBs with enriched affinities are more prominent than N-MORBs. There is no tendency of enrichment towards specific directions. (La/Sm)<sub>N</sub> variations in MORB along the CIR (8°–21°S) fluctuates at a regional scale with local high positive anomalies reflecting compositional heterogeneity of the sub-CIR mantle domain.
DOI: 10.6084/m9.figshare.1177991.v3
title: Ecology BIOL2050 Lab Section 01: Abundance in the Grassland

description: Vicky Luu. Quartrats in the Grassland (dataset 1), Group 2.
DOI: 10.6084/m9.figshare.1177986.v2
title: BJET Dataset 2014

description: Badging data and associated files from BJET Special Issue. Data collected from 44 undergraduate students at the University of Central Florida.
DOI: 10.6084/m9.figshare.1177976.v1
title: Geochemistry and petrogenesis of mafic-ultramafic rocks from the Central Indian Ridge, latitude 8°–17° S: denudation of mantle harzburgites and gabbroic rocks and compositional variation of basalts

description: This study investigates the formation of lower oceanic crust and geochemical variations of basalts along the Central Indian Ridge (CIR, lat. 7°45′–17°10′ S). Harzburgites, various gabbroic cumulates, medium- to fine-grained oxide gabbros, diabases, and pillow basalts were recovered by dredging from segment ends such as ridge-transform intersections (RTIs), non-transform discontinuities (NTDs), and transform offset areas. The occurrence of both harzburgites and gabbroic rocks with minor basalts at all segments ends, and leucogabbro intrusive into harzburgite at the 12°45′ S NTD indicates that oceanic crust at segment ends exposes mantle-derived harzburgites and gabbroic intrusions with a thin basaltic cover due to sparse magmatic activity. Basalts collected along the entire ridge show wide compositional variations between N (normal)- and E (enriched)-mid-ocean ridge basalt (MORB). T (transitional)-MORBs with enriched affinities are more prominent than N-MORBs. There is no tendency of enrichment towards specific directions. (La/Sm)<sub>N</sub> variations in MORB along the CIR (8°–21°S) fluctuates at a regional scale with local high positive anomalies reflecting compositional heterogeneity of the sub-CIR mantle domain.
DOI: 10.6084/m9.figshare.1177991.v2
title: Ecology BIOL2050 Lab Section 01: Abundance in the Grassland

description: Vicky Luu. Quartrats in the Grassland (dataset 1), Group 2.
DOI: 10.6084/m9.figshare.1177972
title: Alignments used for the phylogeny in Chapter 6

description: Alignments for 18S, 28S, and COI are nucleotides. Nuclear genes 686 and 1054 are translated amino acid alignments.
DOI: 10.6084/m9.figshare.1177971
title: BEAST trees generated for Chapter 4

description: BEAST generated for Chapter 4: Factors affecting the successful DNA barcoding of neglected biodiversity: insights from the taxonomically unresolved Rotifera
DOI: 10.6084/m9.figshare.1177986.v1
title: BJET Dataset 2014

description: Files from BJET Special Issue
DOI: 10.6084/m9.figshare.1177970
title: RAxML trees generated for Chapter 4

description: RAxML trees, raw and those smoothed using r8s are included.
DOI: 10.6084/m9.figshare.1177970.v1
title: RAxML trees generated for Chapter 4

description: RAxML trees, raw and those smoothed using r8s are included.
DOI: 10.6084/m9.figshare.1177971.v1
title: BEAST trees generated for Chapter 4

description: BEAST generated for Chapter 4: Factors affecting the successful DNA barcoding of neglected biodiversity: insights from the taxonomically unresolved Rotifera
DOI: 10.6084/m9.figshare.1177969
title: Alignments used for Chapter 4

description: Full and haplotype alignments used for Chapter 4: Factors affecting the successful DNA barcoding of neglected biodiversity: insights from the taxonomically unresolved Rotifera. These include alignments with sequences unidentified at the species level but also those where these are excluded (morphospecies alignments).
DOI: 10.6084/m9.figshare.1177967
title: Gaussian Job Archive for C15H21NOS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1177968
title: Gaussian Job Archive for C15H21NOS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1177969.v1
title: Alignments used for Chapter 4

description: Full and haplotype alignments used for Chapter 4: Factors affecting the successful DNA barcoding of neglected biodiversity: insights from the taxonomically unresolved Rotifera. These include alignments with sequences unidentified at the species level but also those where these are excluded (morphospecies alignments).
DOI: 10.6084/m9.figshare.1177964
title: Gaussian Job Archive for C15H21NOS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1177966
title: Gaussian Job Archive for C15H21NOS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1177967.v1
title: Gaussian Job Archive for C15H21NOS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1177968.v1
title: Gaussian Job Archive for C15H21NOS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1177963
title: Gender, Jacket Colour and Hair Colour

description: Practice data set to help understand proper submission of meta-data and data techniques. Subjects were observed as they were walking along the north side of Lumbers Building at York University in Toronto, Ontario. Gender, hair colour and jacket colour were recorded based on observations.
DOI: 10.6084/m9.figshare.1177964.v1
title: Gaussian Job Archive for C15H21NOS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1177966.v1
title: Gaussian Job Archive for C15H21NOS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1177954
title: Alignments and Trees for Chapter 2

description: Data generated and used for species delimitation for the article: Tang, C. Q., Leasi, F., Obertegger, U., Kieneke, A., Barraclough, T. G., & Fontaneto, D. (2012). The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna. Proceedings of the National Academy of Sciences of the United States of America, 109, 16208–16212. Each dataset (of which there 55) comprises sequences either downloaded from GenBank or sequenced by the co-authors.<br>Alignments made with MAFFT within Geneious.<br>These alignments were collapsed into haplotype alignments.<br>Ultrametric trees were made from these using either BEAST or RaxML with r8s.
DOI: 10.6084/m9.figshare.1177961
title: Gaussian Job Archive for C15H21NOS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1177963.v1
title: Gender, Jacket Colour and Hair Colour

description: Practice data set to help understand proper submission of meta-data and data techniques. Subjects were observed as they were walking along the north side of Lumbers Building at York University in Toronto, Ontario. Gender, hair colour and jacket colour were recorded based on observations.
DOI: 10.6084/m9.figshare.1177953
title: Dados da pesquisa sobre a satisfação dos trabalhadores em empresas de diferentes setores

description: Esse banco de dados será utilizado ao longo do livro AnalisaR. Ele se originou à partir de duas pesquisas conduzidas para verificar a satisfação de trabalhadores em empresas de diferentes áreas.
DOI: 10.6084/m9.figshare.1177961.v1
title: Gaussian Job Archive for C15H21NOS

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1177950
title: Adding Storage Simulation to the SimGrid To olkit: Concepts, Mo dels, and API

description: Version submitted to PMBS
DOI: 10.6084/m9.figshare.1177950.v1
title: Adding Storage Simulation to the SimGrid To olkit: Concepts, Mo dels, and API

description: Version submitted to PMBS
DOI: 10.6084/m9.figshare.1177954.v2
title: Alignments and Trees for Chapter 2

description: Data generated and used for species delimitation for the article: Tang, C. Q., Leasi, F., Obertegger, U., Kieneke, A., Barraclough, T. G., & Fontaneto, D. (2012). The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna. Proceedings of the National Academy of Sciences of the United States of America, 109, 16208–16212. Each dataset (of which there 55) comprises sequences either downloaded from GenBank or sequenced by the co-authors.<br>Alignments made with MAFFT within Geneious.<br>These alignments were collapsed into haplotype alignments.<br>Ultrametric trees were made from these using either BEAST or RaxML with r8s.
DOI: 10.6084/m9.figshare.1177908
title: Bio 2050 lab 1

description: Gender and laces lab 1 data collection.
DOI: 10.6084/m9.figshare.1177954.v1
title: Alignments and Trees for doi: 10.1073/pnas.1209160109

description: Each dataset (of which there 55) comprises sequences either downloaded from GenBank or sequenced by the co-authors.<br>Alignments made with MAFFT within Geneious.<br>These alignments were collapsed into haplotype alignments.<br>Ultrametric trees were made from these using either BEAST or RaxML with r8s.
DOI: 10.6084/m9.figshare.1177908.v1
title: Bio 2050 lab 1

description: Gender and laces lab 1 data collection.
DOI: 10.6084/m9.figshare.1177082
title: Grassland Quadrat Samples

description: Data was collected using ten quadrat samples were taken in a grassland area in Toronto Ontario. The quadrants were used to observe the number of plants, number of species, species identity, approximate percentage of vegetation coverage, and approximate percentage of grass coverage. This data was collected by P Chow, N Gajendran, C Lau, and T Sequeira who all had designated roles in the data collection process. P Chow was designated to estimate the percentage of grass coverage and vegetation coverage so that perception of the estimation would remain generally the same. N Gajendran took five steps in any direction in attempt to keep quadrant sampling relatively random. C Lau recorded the data and the species identity. T Sequeira counted the number of plants within each quadrat distinguishing them by root.
DOI: 10.6084/m9.figshare.1177068
title: Ecology Lab 1

description: The data collected shows university students male and female. It shows what background they identify themselves with and what their major is at York University.
DOI: 10.6084/m9.figshare.1177082.v1
title: Grassland Quadrat Samples

description: Data was collected using ten quadrat samples were taken in a grassland area in Toronto Ontario. The quadrants were used to observe the number of plants, number of species, species identity, approximate percentage of vegetation coverage, and approximate percentage of grass coverage. This data was collected by P Chow, N Gajendran, C Lau, and T Sequeira who all had designated roles in the data collection process. P Chow was designated to estimate the percentage of grass coverage and vegetation coverage so that perception of the estimation would remain generally the same. N Gajendran took five steps in any direction in attempt to keep quadrant sampling relatively random. C Lau recorded the data and the species identity. T Sequeira counted the number of plants within each quadrat distinguishing them by root.
DOI: 10.6084/m9.figshare.1177068.v1
title: Ecology Lab 1

description: The data collected shows university students male and female. It shows what background they identify themselves with and what their major is at York University.
DOI: 10.6084/m9.figshare.1177039
title: Supplemental Table 1

description: List of “growth-factor activity” genes. Counts of TSS and gene-body sites on the HumanMethylation450 BeadChip are provided for each gene. The following four tracks show (from to top bottom): H3H 4me3 histone methylation sites, CTCF binding sites, EZH2 binding sites and locations of common (&gt;1%) SNPs.
DOI: 10.6084/m9.figshare.1177042
title: Methylation level of growth-factor genes predicts experience-related plasticity in the human brain

description: Supplemental data for unpublished French et al. manuscript.
DOI: 10.6084/m9.figshare.1177037
title: Supplemental Table 2

description: Top 1000 SNP’s from the genome wide association analysis of the OFCCR participants.
DOI: 10.6084/m9.figshare.1177039.v1
title: Supplemental Table 1

description: List of “growth-factor activity” genes. Counts of TSS and gene-body sites on the HumanMethylation450 BeadChip are provided for each gene. The following four tracks show (from to top bottom): H3H 4me3 histone methylation sites, CTCF binding sites, EZH2 binding sites and locations of common (&gt;1%) SNPs.
DOI: 10.6084/m9.figshare.1177033
title: Introductory lab

description: In this experiment the two factors were gender and whether the person was wearing an type of glasses. The response that correlated with the two factors was whether the person had a drink with them on the spot. This experiment was done by observing a bunch of groups in a cafeteria area.
DOI: 10.6084/m9.figshare.1177037.v1
title: Supplemental Table 2

description: Top 1000 SNP’s from the genome wide association analysis of the OFCCR participants.