cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11340104.v1
title: Trichogramma evanescens microsatellite information, wild-caught populations, formatted for GenAlEx

description: This data is supplementary to Chapter 6 of PhD thesis titled, "Know Your Enemy: Genomes of Biological Control Agents" by Kim B. Ferguson and is microsatellite data generated for 10 lines of Trichogramma evanescens. This parasitoid is found throughout Europe and is used in biological control of Lepidopteran pests on cabbage and corn. <br>This study will likely be published further, but for now, it is part of a thesis that is accessible through the Wageningen University Library after March 25th, 2020. Lines are named, with regions and putative x and y coordinates, which are an estimate. More information on the lines are available in the thesis.<br><br>For now, additional information for the microsatellite loci is below. Microsatellite data for ten microsatellite loci are available on the ENA under accessions LR758000-LR758009.<br>Microsatellites and primers were mined using a random subsample of T. brassicae reads and MsatCommander/Primer3. More details in thesis.
DOI: 10.6084/m9.figshare.11339987
title: Dataset_SUN COHORT_2019

description: Data for Gómez-Donoso C, et al. PLoS One 2019. Please, contact Maira Bes-Rastrollo (mbes@unav.es) before using this dataset.
DOI: 10.6084/m9.figshare.11339957
title: 期刊水平搜索JournalHomeGrid.xlsx

description: Gene
DOI: 10.6084/m9.figshare.11339957.v1
title: 期刊水平搜索JournalHomeGrid.xlsx

description: Gene
DOI: 10.6084/m9.figshare.11339816
title: Processed nascent RNA from Hetzel et al., 2016

description: Raw data from Hetzel et al., 2016 (PMID: 27729530) were downloaded from GEO Expression database (accession: GSE83103).<br>The datasets re-processed here are: * 5'GRO-seq (GSM2193123)* GRO-seq rep1 (GSM2193124)* GRO-seq rep2 (GSM2193125)<br><br>Processing was conducted as detailed in the Methods section of Hetzel et al., 2016. Briefly, trimming of adapters from the 3' end of reads, followed by alignement to the TAIR10 genome using STAR (default parameters). Only single-mapping reads were considered. BAM alignment files were processed into stranded bigWig files. Replicates were averaged and then normalized using the total number of mapped reads per million.
DOI: 10.6084/m9.figshare.11339816.v1
title: Processed nascent RNA from Hetzel et al., 2016

description: Raw data from Hetzel et al., 2016 (PMID: 27729530) were downloaded from GEO Expression database (accession: GSE83103).<br>The datasets re-processed here are: * 5'GRO-seq (GSM2193123)* GRO-seq rep1 (GSM2193124)* GRO-seq rep2 (GSM2193125)<br><br>Processing was conducted as detailed in the Methods section of Hetzel et al., 2016. Briefly, trimming of adapters from the 3' end of reads, followed by alignement to the TAIR10 genome using STAR (default parameters). Only single-mapping reads were considered. BAM alignment files were processed into stranded bigWig files. Replicates were averaged and then normalized using the total number of mapped reads per million.
DOI: 10.6084/m9.figshare.11339801
title: Modtran's six atmospheric profiles

description: Modtran comes with six types of atmospheric profiles. We separately extract the temperature, pressure, and ozone density from the atmospheric profile as input to the transmission calculation to verify the accuracy of the simplified atmospheric correction model.
DOI: 10.6084/m9.figshare.11339786
title: Dataset from Rats play tit-for-tat instead of integrating social experience over multiple interactions

description: Theoretical models of cooperation typically assume that agents use simple rules based on last encounters, such as ‘tit-for-tat’, to reciprocate help. By contrast, empiricists generally suppose that animals integrate multiple experiences over longer timespans. Here, we compared these two alternative hypotheses by exposing Norway rats to partners that cooperated on three consecutive days but failed to cooperate on the fourth day and to partners that did the exact opposite. In additional controls, focal rats experienced cooperating and defecting partners only once. In a bar-pulling setup, focal rats based their decision to provide partners with food on last encounters instead of overall cooperation levels. To check whether this might be due to a lack of memory capacity, we tested whether rats remember the outcome of encounters that had happened 3 days before. Cooperation was not diminished by the intermediate time interval. We conclude that rats reciprocate help mainly based on most recent encounters instead of integrating social experience over longer timespans.
DOI: 10.6084/m9.figshare.11339786.v1
title: Dataset from Rats play tit-for-tat instead of integrating social experience over multiple interactions

description: Theoretical models of cooperation typically assume that agents use simple rules based on last encounters, such as ‘tit-for-tat’, to reciprocate help. By contrast, empiricists generally suppose that animals integrate multiple experiences over longer timespans. Here, we compared these two alternative hypotheses by exposing Norway rats to partners that cooperated on three consecutive days but failed to cooperate on the fourth day and to partners that did the exact opposite. In additional controls, focal rats experienced cooperating and defecting partners only once. In a bar-pulling setup, focal rats based their decision to provide partners with food on last encounters instead of overall cooperation levels. To check whether this might be due to a lack of memory capacity, we tested whether rats remember the outcome of encounters that had happened 3 days before. Cooperation was not diminished by the intermediate time interval. We conclude that rats reciprocate help mainly based on most recent encounters instead of integrating social experience over longer timespans.
DOI: 10.6084/m9.figshare.11339762
title: Transmittance datasets from Lens transmittance shapes UV sensitivity in the eyes of frogs from diverse ecological and phylogenetic backgrounds

description: Full lens and cornea transmittance datasets
DOI: 10.6084/m9.figshare.11339546.v1
title: Behavior of phengite at high temperature and high pressure: In situ IR and Raman spectroscopic studies

description: Water release in subduction zones is not only an important part of the deep Earth’s water cycle, but also plays an essential role in the physical and chemical properties of rocks constituting the deep Earth. To understand water release processes, it is important to know properties of dehydration in hydrous phases of the downgoing slab. Although it is widely accepted that phengite can be stable to greater depth in subduction environment, behavior of hydroxyl and lattice of it at high temperature and high pressure are less investigated in contrast to other hydrous phases. Here, using in situ IR and Raman spectroscopy, we characterize hydroxyl and lattice of ammonium-bearing and ammonium-free phengite at high temperature and high pressure. No proton transferring and structural phase transition in phengite were observed over the measured temperature and pressure range. Both pressure and temperature induce hydroxyl band shifting to lower frequencies, and pressure has a greater impact. The band width of hydroxyl increases with temperature and pressure. Hydroxyl bond weakening and hydrogen disordering at high temperature and high pressure should be responsible for the spectra variations. On the other hand, the lattice modes soften with increasing temperature whereas stiffen under compression, and ammonium plays an important role in the Grüneisen parameters of the lattice modes, especially the K-O mode. These features of hydroxyl and lattice at high temperature and high pressure could benefit for further understanding dehydration, thermodynamic properties and stability of phengite in subduction zones.
DOI: 10.6084/m9.figshare.11339762.v1
title: Transmittance datasets from Lens transmittance shapes UV sensitivity in the eyes of frogs from diverse ecological and phylogenetic backgrounds

description: Full lens and cornea transmittance datasets
DOI: 10.6084/m9.figshare.11339486
title: Wolfram Mathematica Code (nb-file) from Existence and stability of limit cycles in the model of a planar passive biped walking down a slope

description: The code executes symbolic computations for some quantities used in the paper
DOI: 10.6084/m9.figshare.11339486.v1
title: Wolfram Mathematica Code (nb-file) from Existence and stability of limit cycles in the model of a planar passive biped walking down a slope

description: The code executes symbolic computations for some quantities used in the paper
DOI: 10.6084/m9.figshare.11339330
title: datashare.xlsx

description: The sample data consist of return of 50 Baht Gold Futures and 10 Baht Gold Futures from the period August 3, 2010 to February 26, 2019 for the nearest even month contracts with 2,097 sample data points.
DOI: 10.6084/m9.figshare.11339330.v1
title: datashare.xlsx

description: The sample data consist of return of 50 Baht Gold Futures and 10 Baht Gold Futures from the period August 3, 2010 to February 26, 2019 for the nearest even month contracts with 2,097 sample data points.
DOI: 10.6084/m9.figshare.11339279
title: MOESM6 of Combining information from genome-wide association and multi-tissue gene expression studies to elucidate factors underlying genetic variation for residual feed intake in Australian Angus cattle

description: Additional file 6: Table S5. Genes significantly associated at p
DOI: 10.6084/m9.figshare.11339267
title: MOESM4 of Combining information from genome-wide association and multi-tissue gene expression studies to elucidate factors underlying genetic variation for residual feed intake in Australian Angus cattle

description: Additional file 4: Table S3. Additive and dominance effects.
DOI: 10.6084/m9.figshare.11339270
title: MOESM5 of Combining information from genome-wide association and multi-tissue gene expression studies to elucidate factors underlying genetic variation for residual feed intake in Australian Angus cattle

description: Additional file 5: Table S4. Information of the genes located near the significant SNPs.
DOI: 10.6084/m9.figshare.11339279.v1
title: MOESM6 of Combining information from genome-wide association and multi-tissue gene expression studies to elucidate factors underlying genetic variation for residual feed intake in Australian Angus cattle

description: Additional file 6: Table S5. Genes significantly associated at p
DOI: 10.6084/m9.figshare.11339267.v1
title: MOESM4 of Combining information from genome-wide association and multi-tissue gene expression studies to elucidate factors underlying genetic variation for residual feed intake in Australian Angus cattle

description: Additional file 4: Table S3. Additive and dominance effects.
DOI: 10.6084/m9.figshare.11339261
title: MOESM3 of Combining information from genome-wide association and multi-tissue gene expression studies to elucidate factors underlying genetic variation for residual feed intake in Australian Angus cattle

description: Additional file 3: Table S2. Significant SNPs information.
DOI: 10.6084/m9.figshare.11339270.v1
title: MOESM5 of Combining information from genome-wide association and multi-tissue gene expression studies to elucidate factors underlying genetic variation for residual feed intake in Australian Angus cattle

description: Additional file 5: Table S4. Information of the genes located near the significant SNPs.
DOI: 10.6084/m9.figshare.11339261.v1
title: MOESM3 of Combining information from genome-wide association and multi-tissue gene expression studies to elucidate factors underlying genetic variation for residual feed intake in Australian Angus cattle

description: Additional file 3: Table S2. Significant SNPs information.
DOI: 10.6084/m9.figshare.11339249
title: MOESM1 of Combining information from genome-wide association and multi-tissue gene expression studies to elucidate factors underlying genetic variation for residual feed intake in Australian Angus cattle

description: Additional file 1: Table S1. Mapping complete information
DOI: 10.6084/m9.figshare.11339249.v1
title: MOESM1 of Combining information from genome-wide association and multi-tissue gene expression studies to elucidate factors underlying genetic variation for residual feed intake in Australian Angus cattle

description: Additional file 1: Table S1. Mapping complete information
DOI: 10.6084/m9.figshare.11339210
title: MOESM2 of Meningeal inflammation changes the balance of TNF signalling in cortical grey matter in multiple sclerosis

description: Additional file 2: Table S1. Primary antibodies used for immunohistochemistry/immunofluorescence. Table S2. Complete list of genes differentially expressed between each MS group and CTR samples 2. Table S3. Complete list of 89 Gene Sets significantly modulated in MS samples vs CTR, according to Biocarta Pathway analysis (p&lt;0.05) (significant p-values are in red). Table S4. Complete list of 63 Gene Sets significantly modulated in F+SPMS samples vs F-SPMS, according to Biocarta Pathway analysis (p&lt;0.05) (significant p-values are in red). Table S5. Complete list of 42 Gene Sets significantly modulated in GML vs NAGM samples, according to Biocarta Pathway analysis (p&lt;0.05) (significant p-values are in red).
DOI: 10.6084/m9.figshare.11339210.v1
title: MOESM2 of Meningeal inflammation changes the balance of TNF signalling in cortical grey matter in multiple sclerosis

description: Additional file 2: Table S1. Primary antibodies used for immunohistochemistry/immunofluorescence. Table S2. Complete list of genes differentially expressed between each MS group and CTR samples 2. Table S3. Complete list of 89 Gene Sets significantly modulated in MS samples vs CTR, according to Biocarta Pathway analysis (p&lt;0.05) (significant p-values are in red). Table S4. Complete list of 63 Gene Sets significantly modulated in F+SPMS samples vs F-SPMS, according to Biocarta Pathway analysis (p&lt;0.05) (significant p-values are in red). Table S5. Complete list of 42 Gene Sets significantly modulated in GML vs NAGM samples, according to Biocarta Pathway analysis (p&lt;0.05) (significant p-values are in red).
DOI: 10.6084/m9.figshare.11339198
title: MOESM3 of Temperature-dependent regulation of upstream open reading frame translation in S. cerevisiae

description: Additional file 3. uORF and mORF TE information: The file includes following datasheets: Sheet 1. Includes information regarding all the uORFs identified and studied here. Sheet 2. DESeq2 output for calculation of ΔTEuORF when cultured at 20 °C with respect to 30 °C. Sheet 3. DESeq2 output for calculation of ΔTEuORF when cultured at 37 °C with respect to 30 °C. Sheet 4. DESeq2 output for calculation of ΔTEmORF when cultured at 20 °C with respect to 30 °C. Sheet 5. DESeq2 output for calculation of ΔTEmORF when cultured at 37 °C with respect to 30 °C.
DOI: 10.6084/m9.figshare.11339162
title: MOESM1 of PpCRN7 and PpCRN20 of Phythophthora parasitica regulate plant cell death leading to enhancement of host susceptibility

description: Additional file 1. Sequences and additional information of the Crinkler candidates .xls (1,8â€‰MB).
DOI: 10.6084/m9.figshare.11339162.v1
title: MOESM1 of PpCRN7 and PpCRN20 of Phythophthora parasitica regulate plant cell death leading to enhancement of host susceptibility

description: Additional file 1. Sequences and additional information of the Crinkler candidates .xls (1,8â€‰MB).
DOI: 10.6084/m9.figshare.11339138
title: MOESM9 of Epigenetic analysis of high and low motile sperm populations reveals methylation variation in satellite regions within the pericentromeric position and in genes functionally related to sperm DNA organization and maintenance in Bos taurus

description: Additional file 9. Differentially Methylated Regions (DMRs) found at least in three samples in both high motile (HM) and low motile (LM) sperm populations upstream of genes (5’UTR). In each column are reported: Probe name, position (Chromosome, Start, End), False Discovery Rate (FDR), Feature, protein ID, Description, MRs percentage for each sample (1HM, 2HM, 3HM, 4HM, 1LM, 2LM, 3LM, 4LM).
DOI: 10.6084/m9.figshare.11339138.v1
title: MOESM9 of Epigenetic analysis of high and low motile sperm populations reveals methylation variation in satellite regions within the pericentromeric position and in genes functionally related to sperm DNA organization and maintenance in Bos taurus

description: Additional file 9. Differentially Methylated Regions (DMRs) found at least in three samples in both high motile (HM) and low motile (LM) sperm populations upstream of genes (5’UTR). In each column are reported: Probe name, position (Chromosome, Start, End), False Discovery Rate (FDR), Feature, protein ID, Description, MRs percentage for each sample (1HM, 2HM, 3HM, 4HM, 1LM, 2LM, 3LM, 4LM).
DOI: 10.6084/m9.figshare.11339132
title: MOESM8 of Epigenetic analysis of high and low motile sperm populations reveals methylation variation in satellite regions within the pericentromeric position and in genes functionally related to sperm DNA organization and maintenance in Bos taurus

description: Additional file 8. Differentially Methylated Regions (DMRs) found at least in three samples in both high motile (HM) and low motile (LM) sperm populations overlapping gene bodies. In each column are reported: Probe name, position (Chromosome, Start, End), False Discovery Rate (FDR), Feature, protein ID, Description, MRs percentage for each sample (1HM, 2HM, 3HM, 4HM, 1LM, 2LM, 3LM, 4LM).
DOI: 10.6084/m9.figshare.11339126
title: MOESM7 of Epigenetic analysis of high and low motile sperm populations reveals methylation variation in satellite regions within the pericentromeric position and in genes functionally related to sperm DNA organization and maintenance in Bos taurus

description: Additional file 7. Methylated Regions (MRs) found at least in three samples in both high motile (HM) and low motile (LM) sperm populations overlapping CpG islands (CGIs). In each column are reported: Probe name, position (Chromosome, Start, End), Feature, protein ID, Description, MRs percentage for each sample (1HM, 2HM, 3HM, 4HM, 1LM, 2LM, 3LM, 4LM).
DOI: 10.6084/m9.figshare.11339126.v1
title: MOESM7 of Epigenetic analysis of high and low motile sperm populations reveals methylation variation in satellite regions within the pericentromeric position and in genes functionally related to sperm DNA organization and maintenance in Bos taurus

description: Additional file 7. Methylated Regions (MRs) found at least in three samples in both high motile (HM) and low motile (LM) sperm populations overlapping CpG islands (CGIs). In each column are reported: Probe name, position (Chromosome, Start, End), Feature, protein ID, Description, MRs percentage for each sample (1HM, 2HM, 3HM, 4HM, 1LM, 2LM, 3LM, 4LM).
DOI: 10.6084/m9.figshare.11339132.v1
title: MOESM8 of Epigenetic analysis of high and low motile sperm populations reveals methylation variation in satellite regions within the pericentromeric position and in genes functionally related to sperm DNA organization and maintenance in Bos taurus

description: Additional file 8. Differentially Methylated Regions (DMRs) found at least in three samples in both high motile (HM) and low motile (LM) sperm populations overlapping gene bodies. In each column are reported: Probe name, position (Chromosome, Start, End), False Discovery Rate (FDR), Feature, protein ID, Description, MRs percentage for each sample (1HM, 2HM, 3HM, 4HM, 1LM, 2LM, 3LM, 4LM).
DOI: 10.6084/m9.figshare.11339117
title: MOESM5 of Epigenetic analysis of high and low motile sperm populations reveals methylation variation in satellite regions within the pericentromeric position and in genes functionally related to sperm DNA organization and maintenance in Bos taurus

description: Additional file 5. Methylated Regions (MRs) found at least in three samples in both high motile (HM) and low motile (LM) sperm populations upstream of genes (5’UTR). In each column are reported: Probe name, position (Chromosome, Start, End), Feature, protein ID, Description, MRs percentage for each sample (1HM, 2HM, 3HM, 4HM, 1LM, 2LM, 3LM, 4LM).
DOI: 10.6084/m9.figshare.11339123
title: MOESM6 of Epigenetic analysis of high and low motile sperm populations reveals methylation variation in satellite regions within the pericentromeric position and in genes functionally related to sperm DNA organization and maintenance in Bos taurus

description: Additional file 6. Methylated Regions (MRs) found at least in three samples in both high motile (HM) and low motile (LM) sperm populations downstream of genes (3’UTR). In each column are reported: Probe name, position (Chromosome, Start, End), Feature, protein ID, Description, MRs percentage for each sample (1HM, 2HM, 3HM, 4HM, 1LM, 2LM, 3LM, 4LM).
DOI: 10.6084/m9.figshare.11339117.v1
title: MOESM5 of Epigenetic analysis of high and low motile sperm populations reveals methylation variation in satellite regions within the pericentromeric position and in genes functionally related to sperm DNA organization and maintenance in Bos taurus

description: Additional file 5. Methylated Regions (MRs) found at least in three samples in both high motile (HM) and low motile (LM) sperm populations upstream of genes (5’UTR). In each column are reported: Probe name, position (Chromosome, Start, End), Feature, protein ID, Description, MRs percentage for each sample (1HM, 2HM, 3HM, 4HM, 1LM, 2LM, 3LM, 4LM).
DOI: 10.6084/m9.figshare.11339111
title: MOESM4 of Epigenetic analysis of high and low motile sperm populations reveals methylation variation in satellite regions within the pericentromeric position and in genes functionally related to sperm DNA organization and maintenance in Bos taurus

description: Additional file 4. Methylated Regions (MRs) found at least in three samples in both high motile (HM) and low motile (LM) sperm populations overlapping gene bodies. Columns report: Probe name, position (Chromosome, Start, End), Feature, protein ID, Description, MRs percentage for each sample (1HM, 2HM, 3HM, 4HM, 1LM, 2LM, 3LM, 4LM).
DOI: 10.6084/m9.figshare.11339123.v1
title: MOESM6 of Epigenetic analysis of high and low motile sperm populations reveals methylation variation in satellite regions within the pericentromeric position and in genes functionally related to sperm DNA organization and maintenance in Bos taurus

description: Additional file 6. Methylated Regions (MRs) found at least in three samples in both high motile (HM) and low motile (LM) sperm populations downstream of genes (3’UTR). In each column are reported: Probe name, position (Chromosome, Start, End), Feature, protein ID, Description, MRs percentage for each sample (1HM, 2HM, 3HM, 4HM, 1LM, 2LM, 3LM, 4LM).
DOI: 10.6084/m9.figshare.11339111.v1
title: MOESM4 of Epigenetic analysis of high and low motile sperm populations reveals methylation variation in satellite regions within the pericentromeric position and in genes functionally related to sperm DNA organization and maintenance in Bos taurus

description: Additional file 4. Methylated Regions (MRs) found at least in three samples in both high motile (HM) and low motile (LM) sperm populations overlapping gene bodies. Columns report: Probe name, position (Chromosome, Start, End), Feature, protein ID, Description, MRs percentage for each sample (1HM, 2HM, 3HM, 4HM, 1LM, 2LM, 3LM, 4LM).
DOI: 10.6084/m9.figshare.11339078
title: MOESM12 of Epigenetic analysis of high and low motile sperm populations reveals methylation variation in satellite regions within the pericentromeric position and in genes functionally related to sperm DNA organization and maintenance in Bos taurus

description: Additional file 12. Differentially Methylated Regions (DMRs) found at least in three samples in both high motile (HM) and low motile (LM) sperm populations overlapping BTSAT4 satellite. In each column are reported: Probe name, position (Chromosome, Start, End), False Discovery Rate (FDR), Feature, protein ID, Description, MRs percentage for each sample (1HM, 2HM, 3HM, 4HM, 1LM, 2LM, 3LM, 4LM, average HM, average LM and differences between averages Δ HM-LM).