cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16754080
title: GENPOL project. Political participation of women in politics. Individual data from five waves

description: GENPOL studies the causes of the gender gap in politics, from a new perspective that builds on the research team’s previous projects. This new approach examines whether there are systematic differences in the ways women and men engage with politics, and seeks to explain those differences. As part of the systematic study of women's participation in politics, we have collected individual-level data through an online panel.  The survey asks the same participants at several points in time: 2020, 2021, 2022, 2023, and 2025. The questionnaires used over these five years combine the repetition of certain questions — allowing for comparisons and tracking changes over time — with the introduction of new questions that explore emerging topics. The surveys systematically track multiple dimensions of political participation, civic engagement, attitudes, and personal background characteristics, with some topics remaining constant over time and others evolving or being introduced in specific waves.At the core of each survey wave is a Political Participation Module, which collects information on respondents' involvement in different forms of political activity. This includes contacting politicians, collaborating with political parties and other organizations, signing petitions, participating in demonstrations, and engaging in political consumerism. Over time, some of these questions have been expanded with follow-up questions on the territorial level of some actions.In addition to national-level participation, the surveys capture a wide range of  local political engagement activities, such as attending town hall meetings, contacting local politicians, participating in activities organized by local councils, submitting complaints or suggestions, joining public consultations, and accessing municipal public information. Some waves further ask with which local services these participatory actions were related. Besides, there are questions on attitudes toward gender equality in various domains: children, work, and political leadership, electoral participation in national, regional, and local elections, civic associacionism, satisfaction with democracy and trust, media and information consumption, and political ideology among other topics.
DOI: 10.5281/zenodo.18090070
title: COX-2 Reprograms the Metabolic Secretome  in Triple Negative Human Breast Cancer Xenografts.

description: The data uploaded here consist of raw NMR data obtained from EV and COX-2 breast cancer models. The dataset includes plasma samples, tumor interstitial fluid, and tumor tissue extracts containing small metabolites. Here, for the first time, we characterize the impact of COX-2 overexpression in triple-negative breast cancer xenografts on the tumor metabolic secretome. Our findings reveal a potential role for COX-2–mediated metabolic reprogramming in shaping an immunosuppressive tumor microenvironment.
DOI: 10.5281/zenodo.15662306
title: Data repository for ''Neural Correlates of Phosphene Perception in Blind Individuals: A Step Toward a Bidirectional Cortical Visual Prosthesis''

description: Data repository for the paper ''Neural Correlates of Phosphene Perceptions in Blind Individuals: Towards Bidirectional Brain Communication''. The dataset description is in the word document inside the dataset.
DOI: 10.5281/zenodo.15646883
title: Parkinson's disease patient specific striatum organoids show hallmarks of increased inflammation
DOI: 10.5281/zenodo.14743653
title: Source Data for FEOX for Cellular Iron Microenvironment Dynamics

description: Source data and information associated with FEOX sensor manuscript from Sangokoya Lab
DOI: 10.5281/zenodo.15205625
title: IRAK1 drives chemoresistance and controls immune-microenvironment in non-small cell lung cancer

description: This repository contains all analytical steps performed to investigate the scRNA-seq data related to the impact of IRAK1 gene knockout on the tumor microenvironment in a humanised mouse model, with and without cisplatin treatment, where the H2228 lung cancer cell line was subcutaneously inoculated. 



readme.doc, contains the descripition of the full dataset

command.R contains the script use to generate, from 10xmatrices.zip, the complete matrices of the human cells subset on which the analysis in sh.zip and wt.zip was performed.
DOI: 10.5281/zenodo.10815612
title: Microseismic monitoring of tailings dams - signal and noise evaluation

description: The dataset originates from the manuscript titled "Microseismic Monitoring of Tailings Dams: Evaluation of Signal and Noise Sources," currently under submission to Seismica.

The database is organized into four distinct categories, each serving a specific purpose:





Signal: This category comprises common signals, which are likely to be observed at various stations worldwide. It includes data from both blast events and natural seismic occurrences;




Site-specific Signal: These signals are unique to the specific location or a single station. They primarily consist of data obtained from pulse tests conducted at the site;




Noise: Within this category, common noise sources are documented, which are also anticipated to be observed at other stations globally. The noise sources encompass mechanical disturbances such as those from backhoes, drills, excavators, and trucks. Additionally, data related to natural phenomena such as lightning, thunder, and combinations thereof (lightning accompanied by thunder) are also cataloged here;




Site-specific Noise: This category comprises noise sources that are specific to the particular location or a single station. The primary source identified here is digitizer interference.
DOI: 10.5281/zenodo.14709014
title: Source Data for FEOX for Cellular Iron Microenvironment Dynamics

description: Source data and information associated with FEOX sensor manuscript from Sangokoya Lab
DOI: 10.5281/zenodo.15642466
title: Dataset related to the article "Transcription regulation by TBX18 in smooth muscle cells is essential for normal aortic development and homeostasis"

description: This record contains raw data related to the article “Transcription regulation by TBX18 in smooth muscle cells is essential for normal aortic development and homeostasis”.




ABSTRACT

AimsThis study investigated whether TBX18, a transcription factor known for its critical roles in cardiovascular and urogenital development, but never previously studied in the context of the aorta, contributes to the normal development and homeostasis of this major artery. 

Methods and resultsHistological analyses revealed Tbx18 expression in smooth muscle cells (SMCs) of the adult and embryonic aorta. Following this observation, transgenic mouse models were used to promote ablation of Tbx18 in SMCs from early embryogenesis or in adulthood. Phenotypes were assessed by quantitative imaging and histological analyses. Embryonic conditional ablation of Tbx18 resulted in severe aortic malformations and lethality, whereas adult ablation resulted in milder phenotypes. However, when adult Tbx18 ablation was combined with a Marfan-causing mutation, it promoted exacerbated degradation of aortic ultrastructure, aortic root dilation and lethality. Multiomics analyses at the transcriptomic and translatomic levels revealed upregulation of immediate early genes (IEGs) encoding critical transcription factors such as EGR1, FOS and JUNB in SMCs from Marfan aortae, a response further exacerbated by concomitant ablation of Tbx18. ChIP-seq in primary human aortic SMCs revealed that TBX18 directly binds to several of the genes that were misexpressed in mutant aortae, suggesting direct regulation. Finally, transcriptomic and histological analyses of human patient samples revealed that TBX18 expression was downregulated in aneurysms, with the extent of downregulation correlating with lesion severity.

ConclusionsThese results demonstrated that TBX18 in SMCs is essential not only for normal aortic development, but also for preventing gene expression programs linked to adverse remodeling in adulthood. These findings enhance our understanding of the function of this transcription factor and of molecular mechanisms underlying aneurysm formation, a pathology responsible for a significant number of fatalities in developed countries.
DOI: 10.5281/zenodo.17226721
title: Elemental composition of intertidal shellfish sandbanks sediment samples within Ría de Arousa, Spain

description: The GEOMA Research group from the University of Vigo implements a solution to improve the knowledge of the sediment dynamics, the stability of the ecosystem substratum, and its response to the predicted Climate Change outcome (INTERM). The INTERM solution is based on sedimentological monitoring of sandbanks at specific locations of clam exploitation in the Ría de Arousa (Pontevedra, Spain).

Here we show the results of X-ray Fluorescence analysis carried out on the bulk fraction of sediment samples collected in six locations with current (Camaxe, Xastelas, O Sarrido, Lavanqueira, and O Bohido) or stopped (Lombos de Ulla) shellfish activity. The analyses were conducted at the CACTI facilities (Uvigo) using an X-ray Fluorescence Spectrometer by Wave Scattering (Siemens SRS3000).

This study is part of the “Accelerating and upscaling transformational adaptation in Europe: demonstration of water-related innovation packages (TRANSFORMAR)” coordinated by the Universiteit Antwerpen and funded by the European Union’s Horizon program (H2020_101036683).

In this version:



 New measurements added

Order of Xastelas samples (May 2023) corrected

Minor errors corrected
DOI: 10.5281/zenodo.14503462
title: Aligned DNA sequence matrix of UCEs for phylogenetic analyses in the article "Three new species of Torrent Treefrogs (Anura: Hylidae) of the Hyloscirtus bogotensis group from the eastern Andean slopes and the biogeographic history of the genus"
DOI: 10.5281/zenodo.14503491
title: Aligned DNA sequence matrices of UCEs for phylogenetic analyses in the article "Three new species of Torrent Treefrogs (Anura: Hylidae) of the Hyloscirtus bogotensis group from the eastern Andean slopes and the biogeographic history of the genus"
DOI: 10.5281/zenodo.14178369
title: Dataset on laboratory soil greenhouse gas fluxes and soil microbial parameters as affected by soil management strategies in SOMMIT long term experiments

description: We present a database containing over 50 soil-microbial parameters from eight long-term European experiments where specific soil management strategies are compared. Intact topsoil cores (7 cm diameter, 7 cm height) were collected from LTE participating in the tasks WP3.2 and WP3.3. from the SOMMIT experiment, and incubated under standard conditions in the laboratory. The soil management strategies considered at the eight LTEs ("ACBB Estrées-Mons, France", "Rutzendorf_17, Austria", , "Foggia, Italy", "ULBF-Ljubljana, Slovenia", "Toholampi, Finland", "Senés, Spain", "La Poveda, Spain" and "Grabow 1, Poland") included crop residue management, addition of different types of compost and sludge and biochar addition. All LTEs are referenced according to the LTE Index from https://doi.org/10.5281/zenodo.7598122 . The soil cores were subjected to i) a pre-equilibration phase of five days ("pre.inc"), followed by ii) a drying phase ("DR") of ten days and finally a iii) rewetting (five days, "RW"). A subset of the cores were kept under iv) constantly moist conditions for comparison purposes ("moist"). By the end of the "pre.inc" phase, soil microbial biomass, soil microbial community (phospholipidic fatty acids), enzymatic activities and soil nutrient data were collected. After the "pre.inc" phase, soil fluxes of N2O and CO2 were monitored with an automated system at subdaily temporal resolution. In addition, soil nutrients and microbial biomass data were estimated during at the end of the "DR", "RW" and "moist" phases.  This dataset contributes to a better understanding of the linkages between soil conditions, soil microbes and soil greenhouse gas fluxes as affected by different soil management strategies across European agro-ecosystems. This product is part of the EJP SOIL internal project SOMMIT, and serves as deliverable WP3.4
DOI: 10.5281/zenodo.12208342
title: A dataset for automatic vocal mode classification

description: A dataset for automatic vocal mode classification with vocal modes as introduced by the complete vocal technique (CVT). Data was recorded at the institute for information processing and consists in total around 3700 samples of sustained vowels. An annotation, created by a cvt-experienced vocal coach, is provided. For a detailed description, read the readme.txt, which also explains precisely the naming convention and other details.

The dataset contains a few samples that did not show a proper vocal "oscillation" in the folder "ExcludedSamples". They are not part of the actual vocal mode dataset, but were included to perhaps help other research in the future, e.g., to detect singing issues.
DOI: 10.5281/zenodo.11058374
title: Raw data for the submitted manuscript: Effects of microplastics on enchytraeid multigeneration reproduction and soil physicochemical properties

description: Survival and reproduction data from multigenerational single species tests involving four types of plastic materials.
DOI: 10.5281/zenodo.15394846
title: Supplementary Material for "Effects of mineralogy on ∆47 and ∆48 of carbonate-derived CO2 below analytical resolution "

description: Raw data, processing results as well as X-ray diffractogram supplementary files accompanying our ∆47, ∆48 AFF study.
DOI: 10.5281/zenodo.17463717
title: AH with MSU deposits - clinical, ultrasound and lab data.

description: Dataset supporting the following studies:



Peral-Garrido ML, Gómez-Sabater S, Caño R, et al. Prevalence of crystal deposits in asymptomatic hyperuricemia according to different scanning definitions: A comparative study. Semin Arthritis Rheum. 2024;68:152470. doi:10.1016/j.semarthrit.2024.152470

Peral-Garrido ML, Gómez-Sabater S, Caño R, et al. Systemic inflammation in asymptomatic hyperuricaemia with sonographic crystal deposits, including a comparison with normouricaemia and gout. Rheumatology (Oxford). 2025;64(4):1807-1816. doi:10.1093/rheumatology/keae533
DOI: 10.5281/zenodo.17206194
title: Data for: Current and future habitat suitability of Ursus thibetanus (Asiatic black bear) in the northwestern Himalayan conservation reserve under multiple climate change scenarios

description: Data pertaining to the manuscript 'Current and future habitat suitability of Ursus thibetanus (Asiatic black bear) in the northwestern Himalayan conservation reserve under multiple climate change scenarios'
DOI: 10.5281/zenodo.11649250
title: Excavation data from Eripe 1 rock shelter, Papua New Guinea

description: Data from archaeological excavations made in 2024 at the Eripe 1 rockshelter, Gulf Province, Papua New Guinea, by the Papuan Past Project team. This dataset can be visualised using the online archeoViz application.

This dataset includes piece-plotted objects and some objects from  the sieved materials (note that pebbles were piece-plotted in spit 1 and then retrieved from the sieve). The archaeological assemblage includes mainly lithic and faunal remains,  some beads, and charcoal samples.



id: unique identifier in the dataset

id_plot: unique identifier attributed during excavation

layer:  number of the 10 cm spits, defined from objects' altitude

layer_recorded:  spit recorded during the excavation

object_type: type of archaeological remain

object_subtype: subtype of archaeological remain

object_fauna.anatomy: when available about faunal remains, anatomical parts

object_lithic.material: lithic raw material

object_local.interpretation: description of objects by local Pawaian helpers during the excavation
DOI: 10.5281/zenodo.14937646
title: Geospatial Analysis of Carbon Stocks and Their Interaction with Protection Regimen and Road Network in an Insular Forest Ecosystem

description: This repository includes the key results, datasets, and scripts used in the study "Geospatial Analysis of Carbon Stocks and Their Interaction with Protection Regimen and Road Network in an Insular Forest Ecosystem". While a selection of datasets is available here, certain larger data files are available upon request from the corresponding author due to their size. This collection provides comprehensive resources for replicating the analysis and further exploring the findings presented in the associated paper.
DOI: 10.5281/zenodo.17271527
title: Variation in tolerance to heterospecific pollen from a non-native congener depends on co-existence history of maternal and paternal source populations

description: Description: Explanation of column names which are possibly not easy to understand.





female_pop: populations from which pollen recipients were collected

female_origin: populations from which pollen recipients were collected

sp_of_female: species of the recipient plant

female_id: plant ID of the recipient

pistil_length: the pistil length of recipient plants (μm)

sp_of_male: species of the pollen donor

male_id: plant ID of the pollen donor

seed: the total number of seeds per fruit resulting from each treatment

CP_donor_pop: populations from which conspecific pollen donors were collected

CP_donor_origin: population type (sympatric or allopatric) of the populations from which conspecific pollen donors were collected

CP_donor_id: plant ID of the conspecific pollen donor

HP_donor_pop: populations from which heterospecific pollen donors were collected

HP_donor_id: plant ID of the heterospecific pollen donor

experiment: exp1 (Experiment 1), exp2 (Experiment 2). See Figure 2 for details on the two experiments.
DOI: 10.5281/zenodo.13620004
title: Canadian Arctic whale genomic data for Gradient Forest analyses

description: This dataset contains resequencing data used in our Arctic whale genomics research exaiming genetic offsets using Gradient Forest analyses, including unfiltered genomic variants and filtered SNPs. Source code for genomic analyses is available at https://github.com/edegreef/arctic-whales-resequencing/tree/main/genetic_offsets. Data uploaded here contain:

Beluga whale:



sample_info_GF_beluga.csv - metadata for beluga whale samples

146Beluga.vcf.gz - all variant calls, including indels and SNPs (n = 146 beluga individuals), mapped to the beluga reference genome

140Belugas_filtered_imputed.vcf.gz - SNPs filtered for quality, autosomes, and MAF, and removal of close kin, and imputed (n = 140 beluga individuals)

140Belugas_filtered_imputed_thin.vcf.gz - Filtered SNPs thinned with minimum 1K bp distance (n = 140 beluga individuals)


Narwhal:



sample_info_GF_narwhal.csv - metadata for narwhal samples

narwhal_allvariants.n60.vcf.gz - all variant calls, including indels and SNPs (n = 60 narwhal individuals), mapped to the narwhal reference genome

narwhal_snps.filtered.n57.imputed.vcf.gz - SNPs filtered for quality, autosomes, and MAF, and removal of close kin, and imputed (n = 57 narwhal individuals)

narwhal_snps.filtered.n57.imputed.thin.vcf.gz - Filtered SNPs thinned with minimum 1K bp distance (n = 57 narwhal individuals)


Bowhead whale:



sample_info_GF_bowhead.csv - metadata for bowhead whale samples

bowhead_RWmap_allvariants.n20.vcf.gz  - all variant calls, including indels and SNPs (n = 20 bowhead individuals), mapped to the NA Right Whale reference genome

bowhead_RWmap_snps.filtered.n19.imputed.vcf.gz - SNPs filtered for quality, autosomes, and MAF, and removal of close kin, and imputed (n = 19 bowhead individuals)

bowhead_RWmap.snps.filtered.n19.imputed.thin.vcf.gz - Filtered SNPs thinned with minimum 1K bp distance (n = 19 bowhead individuals)
DOI: 10.5281/zenodo.15206095
title: CT-EBM-SP - Corpus of Clinical Trials for Evidence-Based-Medicine in Spanish (version 3)

description: A collection of 1200 texts (292173 tokens) about clinical trials studies and clinical trials announcements in Spanish:

- 500 abstracts from journals published under a Creative Commons license, e.g. available in PubMed or the Scientific Electronic Library Online (SciELO). - 700 clinical trials announcements published in the European Clinical Trials Register and Repositorio Español de Estudios Clínicos. 

Texts were annotated with the following entities types:

- Semantic groups from the Unified Medical Language System: ANAT, CHEM, DEVI, DISO, LIVB, PHYS and PROC.- Medical drug information: Contraindicated, Dose or strength, Form and Route or mode of administration.- Temporal expressions: Age, Date, Duration, Frequency and Time.- Miscellaneous medical entities: Concept, Food or drink, Observation or finding, Quantifier_or_Qualifier, and Result_or_Value.- Negation/Speculation: Neg_cue, Negated, Spec_cue and Speculated.- Temporality attributes (History_of and Future) and experiencer attributes (Patient, Family_member and Other).

In addition, the following semantic relationships were annotated: 

- Intervention-related relations:     • Has_Dose_or_Strength    • Has_Drug_Form    • Has_Route_or_Mode    • Combined_with    • Used_for    • Has_Result_or_Value- Temporal relations:     • Before    • After    • Overlap    • Has_Age     • Has_Frequency    • Has_Duration_or_Interval- Event-related relations:     • Causes    • Experiences    • Has_Quantifier_or_Qualifier    • Location_of- Assertion relations:     • Negation    • Speculation

81.72% of the total entities were normalized to Unified Medical Language System (UMLS) Concept Unique Identifiers (CUIs).

We acknowledge that the source of the data from the European Clinical Trials Register (EudraCT) is the European Medicines Agency, who is the owner of copyright and other intellectual property rights, and allows data sharing for non-commercial and commercial purposes, provided that the Agency is always acknowledged as the source of the material.
DOI: 10.5281/zenodo.14967967
title: occurrence data for 614 Poaceae species with associated genome assemblies

description: This dataset is obtain using rgbif::occ_search() function for 614 Poaceae species.In the subsequent analysis, this dataset is combined with occurrence data from BIEN database and furhter cleaned with CoordinateCleaner package.
DOI: 10.5281/zenodo.15459047
title: Tree-ring and streamflow datasets (1840-2021): variance stabilized ensemble tree-ring chronology and reconstructed May-June streamflow of Zemu River, Eastern Himalaya

description: The data set contains 182-years of variance stabilized ensemble tree-ring chronology and the reconstructed May-June Streamflow of the Zemu River, Eastern Himalaya. The data are provided as seperate text files and each file contains two columns, i.e., Year and the ring-width indices (RWI) for the chronology file, and Year and streamflow for the reconstruction in cumecs (m³/s) from 1840 to 2021.
DOI: 10.5281/zenodo.14968186
title: occurrence data for 614 Poaceae species with associated genome assemblies

description: This dataset (species_metadata_gbif_merged.tsv) is obtain using rgbif::occ_search() function for 614 Poaceae species.In the subsequent analysis, this dataset (species_metadata_gbif_merged.tsv) is combined with occurrence data from BIEN database and furhter cleaned with CoordinateCleaner package to generate the combined dataset (formal_envData_20240820.txt) for species haibitat environmental characterization.