cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive111052.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive111053.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive111054.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive111837.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive111838.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive111839.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive111840.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive111841.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive111842.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive111843.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive111844.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive111845.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112579.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112580.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112581.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112582.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112583.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108511.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108512.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108513.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108514.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108515.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108516.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.6084/m9.figshare.21756707.v1
title: Additional file 6 of Proteomic analysis of small extracellular vesicles from the plasma of patients with hepatocellular carcinoma

description: Additional file 6. The interaction scores in the PPI network.
DOI: 10.6084/m9.figshare.21756710
title: Additional file 7 of Proteomic analysis of small extracellular vesicles from the plasma of patients with hepatocellular carcinoma

description: Additional file 7. The data of the clustering analysis based on the STRING database.
DOI: 10.6084/m9.figshare.21756710.v1
title: Additional file 7 of Proteomic analysis of small extracellular vesicles from the plasma of patients with hepatocellular carcinoma

description: Additional file 7. The data of the clustering analysis based on the STRING database.
DOI: 10.6084/m9.figshare.21756713
title: Additional file 8 of Proteomic analysis of small extracellular vesicles from the plasma of patients with hepatocellular carcinoma

description: Additional file 8. The raw data of band density in the discovery cohort.
DOI: 10.5281/zenodo.10663145
title: LENS: A LEO Satellite Network Measurement Dataset (CSV) - 202401 - Part 2

description: LENS dataset 2024-01 Part 2 (CSV format)

Please see https://github.com/clarkzjw/LENS for the complete description of the dataset.
DOI: 10.5281/zenodo.10663146
title: LENS: A LEO Satellite Network Measurement Dataset (CSV) - 202401 - Part 2

description: LENS dataset 2024-01 Part 2 (CSV format)

Please see https://github.com/clarkzjw/LENS for the complete description of the dataset.
DOI: 10.6084/m9.figshare.21756713.v1
title: Additional file 8 of Proteomic analysis of small extracellular vesicles from the plasma of patients with hepatocellular carcinoma

description: Additional file 8. The raw data of band density in the discovery cohort.
DOI: 10.6084/m9.figshare.21756716.v1
title: Additional file 9 of Proteomic analysis of small extracellular vesicles from the plasma of patients with hepatocellular carcinoma

description: Additional file 9. The raw data of band density in the validation cohort.
DOI: 10.6084/m9.figshare.21756716
title: Additional file 9 of Proteomic analysis of small extracellular vesicles from the plasma of patients with hepatocellular carcinoma

description: Additional file 9. The raw data of band density in the validation cohort.
DOI: 10.6084/m9.figshare.9698111
title: Additional file 10: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S4. Summary of co-expression modules derived from WGCNA analysis. (XLSX 9753 kb)
DOI: 10.6084/m9.figshare.9698111.v1
title: Additional file 10: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S4. Summary of co-expression modules derived from WGCNA analysis. (XLSX 9753 kb)
DOI: 10.6084/m9.figshare.21756708
title: Additional file 1 of Identification and validation of plant height, spike length and spike compactness loci in common wheat (Triticum aestivum L.)

description: Additional file 1: Supplementary file 1.
DOI: 10.6084/m9.figshare.21756708.v1
title: Additional file 1 of Identification and validation of plant height, spike length and spike compactness loci in common wheat (Triticum aestivum L.)

description: Additional file 1: Supplementary file 1.
DOI: 10.6084/m9.figshare.12319559
title: FGFR1 regulates proliferation and metastasis by targeting CCND1 in FGFR1 amplified lung cancer

description: <b>Aims</b>: The analysis of the online databases revealed that CCND1 expression is correlated with poor prognosis in LSCC. We aimed to explore the function of CCND1 in tumor progression in LSCC. <b>Main methods</b>: The expression of mRNA was measured using qRT-PCR. Protein expression was assessed by Western blot. Cell migration and invasion were assessed by transwell assay. <b>Key findings</b>: CCND1 was co-overexpressed with FGFR1 in lung cancer patients. Overexpression of CCND1 promoted LSCC cell proliferation and metastasis. FGFR1 promoted the processes of EMT through AKT/MAPK signaling by targeting CCND1 in FGFR1-amplification cell lines. <b>Significance</b>: IIn conclusion, our study demonstrated the regulatory mechanism between CCND1 and FGFR1 in FGFR1 amplified LSCC. Co-targeting CCND1 and FGFR1 could provide greater clinical benefits.
DOI: 10.6084/m9.figshare.9698120
title: Additional file 11: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S5. TF genes in all WGCNA modules. (XLSX 770 kb)
DOI: 10.6084/m9.figshare.9698120.v1
title: Additional file 11: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S5. TF genes in all WGCNA modules. (XLSX 770 kb)
DOI: 10.6084/m9.figshare.9698126
title: Additional file 12: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S6. Summary of TF families in green, turquoise, and blue modules. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9698126.v1
title: Additional file 12: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S6. Summary of TF families in green, turquoise, and blue modules. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9698129
title: Additional file 13: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S7. Enriched GO terms of all modules. (XLSX 2113 kb)
DOI: 10.6084/m9.figshare.9698129.v1
title: Additional file 13: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S7. Enriched GO terms of all modules. (XLSX 2113 kb)
DOI: 10.6084/m9.figshare.12319571
title: Phenotypic analysis of tumor-infiltrating lymphocytes from non-small cell lung cancer and their potential application for adoptive cell therapy

description: Adoptive cell therapy (ACT) of tumor-infiltrating lymphocytes (TILs) has demonstrated clinical benefits in metastatic melanoma treatment. However, the clinical application of TILs produced by a widely used standard protocol from non-small cell lung cancer (NSCLC) can be quite challenging because of the limited clinical benefits. A comprehensive phenotypic knowledge of TILs obtained from NSCLC is important for the development and improvement of personalized TIL therapy for NSCLC patients. In this study, we successfully expanded TILs from 141 NSCLC tissues which can be used in clinical ACT after expansion by a rapid expansion protocol (REP). Our study indicates that the clinicopathological characteristics of patients have considerable impacts on the phenotype of <i>in vitro</i> TIL culture products. Different culture conditions are necessary for patients with different clinical features. Specific manipulations before REP expansion are required depending on the different phenotypes of TIL cultures (e.g. depletion of immune-suppressive γδT cells). With these optimizations, next-generation TIL therapy may become a treatment alternative for NSCLC patients in the future.
DOI: 10.6084/m9.figshare.9698135
title: Additional file 14: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S8. Top 20 genes co-expressed with WOX4b and CLE41a from our RNA-seq data. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9698135.v1
title: Additional file 14: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S8. Top 20 genes co-expressed with WOX4b and CLE41a from our RNA-seq data. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9698138
title: Additional file 15: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S9. Primers used for qPCR. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9698138.v1
title: Additional file 15: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S9. Primers used for qPCR. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.21756747.v1
title: Additional file 11 of Evolution and functional analysis of the GRAS family genes in six Rosaceae species

description: Additional file 11: Table S1. Total of 333 GRAS genes were identified in six Rosaceae species. Table S2. Ks values of six Rosaceae species. Table S3. Duplication events of six Rosaceae species. Table S4. ka/Ks values of six Rosaceae species. Table S5. Primers used to detect drought stress and salt stress gene expression.
DOI: 10.6084/m9.figshare.21756747
title: Additional file 11 of Evolution and functional analysis of the GRAS family genes in six Rosaceae species

description: Additional file 11: Table S1. Total of 333 GRAS genes were identified in six Rosaceae species. Table S2. Ks values of six Rosaceae species. Table S3. Duplication events of six Rosaceae species. Table S4. ka/Ks values of six Rosaceae species. Table S5. Primers used to detect drought stress and salt stress gene expression.
DOI: 10.15468/dp.1fuyga
title: pretty sunburst

description: test for Jan
DOI: 10.6084/m9.figshare.9698165
title: Additional file 7: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S1. Summary of sequencing data. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9698165.v1
title: Additional file 7: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S1. Summary of sequencing data. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9698168
title: Additional file 8: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S2. Summary of DEGs between individual time point and the corresponding control samples identified by edgeR analysis. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9698168.v1
title: Additional file 8: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S2. Summary of DEGs between individual time point and the corresponding control samples identified by edgeR analysis. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9698171
title: Additional file 9: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S3. DEGs between individual time point and the corresponding control samples identified by edgeR analysis. (XLSX 18432 kb)
DOI: 10.6084/m9.figshare.9698171.v1
title: Additional file 9: of Genome-wide transcriptional adaptation to salt stress in Populus

description: Table S3. DEGs between individual time point and the corresponding control samples identified by edgeR analysis. (XLSX 18432 kb)
DOI: 10.6084/m9.figshare.9698225
title: Additional file 2: of Ischemic axonal injury up-regulates MARK4 in cortical neurons and primes tau phosphorylation and aggregation

description: Data File S1. Gene expression data from MACS-FACS isolated CTIP2+ Layer 5 cortical neurons. (XLSX 1172 kb)
DOI: 10.6084/m9.figshare.9698225.v1
title: Additional file 2: of Ischemic axonal injury up-regulates MARK4 in cortical neurons and primes tau phosphorylation and aggregation

description: Data File S1. Gene expression data from MACS-FACS isolated CTIP2+ Layer 5 cortical neurons. (XLSX 1172 kb)
DOI: 10.6084/m9.figshare.24902705
title: N6-methyladenosine methylation analysis of long noncoding RNAs and mRNAs in 5-FU-resistant colon cancer cells

description: N6 methyladenosine (m6A), methylation at the sixth N atom of adenosine, is the most common and abundant modification in mammalian mRNAs and non-coding RNAs. Increasing evidence shows that the alteration of m6A modification level could regulate tumour proliferation, metastasis, self-renewal, and immune infiltration by regulating the related expression of tumour genes. However, the role of m6A modification in colorectal cancer (CRC) drug resistance is unclear. Here, MeRIP-seq and RNA-seq techniques were utilized to obtain mRNA, lncRNA expression, and their methylation profiles in 5-Fluorouracil (5-FU)-resistant colon cancer HCT-15 cells and control cells. In addition, we performed detailed bioinformatics analysis as well as in vitro experiments of lncRNA to explore the function of lncRNA with differential m6A in CRC progression and drug resistance. In this study, we obtained the m6A methylomic landscape of CRC cells and resistance group cells by MeRIP-seq and RNA-seq. We identified 3698 differential m6A peaks, of which 2224 were hypermethylated, and 1474 were hypomethylated. Among the lncRNAs, 60 were hypermethylated, and 38 were hypomethylated. GO and KEGG analysis annotations showed significant enrichment of endocytosis and MAPK signalling pathways. Moreover, knockdown of lncRNA ADIRF-AS1 and AL139035.1 promoted CRC proliferation and invasive metastasis in vitro. lncRNA- mRNA network showed that ADIRF-AS1 and AL139035.1 May play a key role in regulating drug resistance formation. We provide the first m6A methylation profile in 5-FU resistance CRC cells and analyse the functions of differential m6A-modified mRNAs and lncRNAs. Our results indicated that differential m6A RNAs were significantly associated with MAPK signalling and endocytosis after induction of 5-FU resistance. Knockdown of LncRNA ADIRF-AS1 and AL139035.1 promotes CRC progression and might be critical in regulating drug resistance formation. We outline the first m6A methylation profile of mRNA and lncRNA in CRC cells involved in 5-FU resistance.This study sought to identify the critical genes that produced 5-FU resistance by analysing the functions of differentially m6A-modified mRNAs and lncRNAs. We outline the first m6A methylation profile of mRNA and lncRNA in CRC cells involved in 5-FU resistance. This study sought to identify the critical genes that produced 5-FU resistance by analysing the functions of differentially m6A-modified mRNAs and lncRNAs.
DOI: 10.6084/m9.figshare.24902705.v1
title: N6-methyladenosine methylation analysis of long noncoding RNAs and mRNAs in 5-FU-resistant colon cancer cells

description: N6 methyladenosine (m6A), methylation at the sixth N atom of adenosine, is the most common and abundant modification in mammalian mRNAs and non-coding RNAs. Increasing evidence shows that the alteration of m6A modification level could regulate tumour proliferation, metastasis, self-renewal, and immune infiltration by regulating the related expression of tumour genes. However, the role of m6A modification in colorectal cancer (CRC) drug resistance is unclear. Here, MeRIP-seq and RNA-seq techniques were utilized to obtain mRNA, lncRNA expression, and their methylation profiles in 5-Fluorouracil (5-FU)-resistant colon cancer HCT-15 cells and control cells. In addition, we performed detailed bioinformatics analysis as well as in vitro experiments of lncRNA to explore the function of lncRNA with differential m6A in CRC progression and drug resistance. In this study, we obtained the m6A methylomic landscape of CRC cells and resistance group cells by MeRIP-seq and RNA-seq. We identified 3698 differential m6A peaks, of which 2224 were hypermethylated, and 1474 were hypomethylated. Among the lncRNAs, 60 were hypermethylated, and 38 were hypomethylated. GO and KEGG analysis annotations showed significant enrichment of endocytosis and MAPK signalling pathways. Moreover, knockdown of lncRNA ADIRF-AS1 and AL139035.1 promoted CRC proliferation and invasive metastasis in vitro. lncRNA- mRNA network showed that ADIRF-AS1 and AL139035.1 May play a key role in regulating drug resistance formation. We provide the first m6A methylation profile in 5-FU resistance CRC cells and analyse the functions of differential m6A-modified mRNAs and lncRNAs. Our results indicated that differential m6A RNAs were significantly associated with MAPK signalling and endocytosis after induction of 5-FU resistance. Knockdown of LncRNA ADIRF-AS1 and AL139035.1 promotes CRC progression and might be critical in regulating drug resistance formation. We outline the first m6A methylation profile of mRNA and lncRNA in CRC cells involved in 5-FU resistance.This study sought to identify the critical genes that produced 5-FU resistance by analysing the functions of differentially m6A-modified mRNAs and lncRNAs. We outline the first m6A methylation profile of mRNA and lncRNA in CRC cells involved in 5-FU resistance. This study sought to identify the critical genes that produced 5-FU resistance by analysing the functions of differentially m6A-modified mRNAs and lncRNAs.
DOI: 10.6084/m9.figshare.3406903
title: Spatial and temporal patterns of air quality in the three economic zones of China

description: The air pollution problem in China continues to become more severe with dramatic economic development. The focus of this study was to create a map representing the spatial–temporal pattern of the air quality in the three major economic zones in China, including the Beijing–Tianjin–Hebei Economic Zone, the Yangtze River Delta Economic Zone, and the Pearl River Delta Economic Zone in 2014. A calendar view was used to visualize the daily condition of air quality and primary pollutant in each city in 2014, and geographic references were added to each visualization according to their spatial relationships. The map provides an efficient way to investigate and understand the current status of air quality and spatial–temporal patterns of air quality.
DOI: 10.6084/m9.figshare.3406903.v1
title: Spatial and temporal patterns of air quality in the three economic zones of China

description: The air pollution problem in China continues to become more severe with dramatic economic development. The focus of this study was to create a map representing the spatial–temporal pattern of the air quality in the three major economic zones in China, including the Beijing–Tianjin–Hebei Economic Zone, the Yangtze River Delta Economic Zone, and the Pearl River Delta Economic Zone in 2014. A calendar view was used to visualize the daily condition of air quality and primary pollutant in each city in 2014, and geographic references were added to each visualization according to their spatial relationships. The map provides an efficient way to investigate and understand the current status of air quality and spatial–temporal patterns of air quality.
DOI: 10.25582/data.2024-02.3029565/2305366
title: Data for EMSL Project 60141 from February 2024
DOI: 10.25582/data.2024-02.3029567/2305367
title: Data for EMSL Project 60141 from February 2024