cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5991199.v1
title: Developmental and compositional changes in <i>Leptospermum scoparium</i> nectar and their relevance to mānuka honey bioactives and markers<sup>*</sup>

description: Mānuka (<i>Leptospermum scoparium</i>) is valued for its unique bioactive honey, but relatively little is known about mānuka nectar and the factors modulating its production. In this study the compositional variability of nectar collected throughout mānuka floral development was measured in glasshouse-cultivated plants. The total yield of nectar was estimated by rinsing flowers with water and measuring total sugars (°Brix). The concentration of total sugars and of dihydroxyacetone (DHA), the precursor to methylglyoxal and the key mānuka honey bioactive, increased through floral development and maximised just prior to initiation of flower degradation. Similarly, the patterns of several mānuka honey authenticity markers including lepteridine, leptosperin and 3-phenyllactic acid also followed a similar trend through flower development, suggesting that their biosynthesis was associated with nectar production. Leaf exudates produced as a result of scale insect infestation of some mānuka plants were deficient in the key markers DHA, leptosperin and lepteridine, but did contain 4-hydroxyphenyllactic acid. This study suggests that the predominant key markers of genuine mānuka are biosynthesised in the floral tissues of the plant rather than elsewhere. For robust analysis and comparison of mānuka nectar yield and composition, sampling needs to take into account the floral developmental stage of the flowers sampled.
DOI: 10.6084/m9.figshare.5991196
title: Magneto-biostratigraphic constraints of the Eocene micrite–calciturbidite transition in New Caledonia: tectonic implications

description: We conducted an integrated magneto-biostratigraphic study of a 37 m-thick composite section exposed at two sites near Nouméa (New Caledonia). The section contains a transition from pelagic micrite to terrigenous-rich calciturbidites. This transition, observed regionally in coeval records of New Caledonia, marks a shift from pelagic sedimentation on a stable continental submarine plateau to turbidite deposition indicating development of a slope in a convergent tectonic regime. The studied section spans magnetic polarity Chrons C22r to C20r, calcareous nannofossil zones CNE5 to CNE10, and radiolarian zones RP9 to RP11 (49.5 to c. 44 Ma), and the micrite–turbidite transition occurred around 45.3 Ma (early middle Eocene). This transition could be the onshore correlative of a regional switch from tectonic extension to compression, which has been inferred from analysis of new seismic profiles acquired for the Tasman–northern Zealandia area, and that has been interpreted as precursor of the Tonga–Kermadec subduction initiation.
DOI: 10.6084/m9.figshare.5991196.v1
title: Magneto-biostratigraphic constraints of the Eocene micrite–calciturbidite transition in New Caledonia: tectonic implications

description: We conducted an integrated magneto-biostratigraphic study of a 37 m-thick composite section exposed at two sites near Nouméa (New Caledonia). The section contains a transition from pelagic micrite to terrigenous-rich calciturbidites. This transition, observed regionally in coeval records of New Caledonia, marks a shift from pelagic sedimentation on a stable continental submarine plateau to turbidite deposition indicating development of a slope in a convergent tectonic regime. The studied section spans magnetic polarity Chrons C22r to C20r, calcareous nannofossil zones CNE5 to CNE10, and radiolarian zones RP9 to RP11 (49.5 to c. 44 Ma), and the micrite–turbidite transition occurred around 45.3 Ma (early middle Eocene). This transition could be the onshore correlative of a regional switch from tectonic extension to compression, which has been inferred from analysis of new seismic profiles acquired for the Tasman–northern Zealandia area, and that has been interpreted as precursor of the Tonga–Kermadec subduction initiation.
DOI: 10.6084/m9.figshare.5991193
title: AAAAAATest testVersion 1 is accidental not correct. Please disregard Version 1 and use Version 2.

description: This version is accidental not correct. Please use version 2
DOI: 10.6084/m9.figshare.5991193.v1
title: Test test

description: Test test
DOI: 10.6084/m9.figshare.5991193.v3
title: Test test

description: This version is accidental not correct. Please use version 2
DOI: 10.6084/m9.figshare.5991193.v2
title: Test test

description: Test test
DOI: 10.6084/m9.figshare.5991136
title: Supplementary Material for manuscript "PKA-RII subunit phosphorylation precedes activation by cAMP and regulates activity termination" by Jörg Isensee, Melanie Kaufholz, Matthias Knape, Jan Hasenauer, Hanna Hammerich, Humberto Gonczarowska-Jorge, Rene Zahedi, Frank Schwede, Friedrich Herberg, and Tim Hucho

description: This fileset contains Supplementary Material for the manuscript "PKA-RII subunit phosphorylation precedes activation by cAMP and regulates activity termination" by Jörg Isensee, Melanie Kaufholz, Matthias Knape, Jan Hasenauer, Hanna Hammerich, Humberto Gonczarowska-Jorge, Rene Zahedi, Frank Schwede, Friedrich Herberg, and Tim Hucho.<br>1) Descriptions of the considered mathematical models.2) Experimental data used for parameter estimation and validation.3) Code for parameter estimation, analysis and validation of the model using the MATLAB toolbox Data2Dynamics.4) Visualisations of essential results.
DOI: 10.6084/m9.figshare.5991136.v1
title: Supplementary Material for manuscript "PKA-RII subunit phosphorylation precedes activation by cAMP and regulates activity termination" by Jörg Isensee, Melanie Kaufholz, Matthias Knape, Jan Hasenauer, Hanna Hammerich, Humberto Gonczarowska-Jorge, Rene Zahedi, Frank Schwede, Friedrich Herberg, and Tim Hucho

description: This fileset contains Supplementary Material for the manuscript "PKA-RII subunit phosphorylation precedes activation by cAMP and regulates activity termination" by Jörg Isensee, Melanie Kaufholz, Matthias Knape, Jan Hasenauer, Hanna Hammerich, Humberto Gonczarowska-Jorge, Rene Zahedi, Frank Schwede, Friedrich Herberg, and Tim Hucho:<br>1) Descriptions of the considered mathematical models.2) Experimental data used for parameter estimation and validation.3) Code for parameter estimation, analysis and validation of the model using the MATLAB toolbox Data2Dynamics (https://github.com/Data2Dynamics/d2d).4) Visualisations of essential results. p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica}This fileset contains Supplementary Material for the manuscript "PKA-RII subunit phosphorylation precedes activation by cAMP and regulates activity termination" by Jörg Isensee, Melanie Kaufholz, Matthias Knape, Jan Hasenauer, Hanna Hammerich, Humberto Gonczarowska-Jorge, Rene Zahedi, Frank Schwede, Friedrich Herberg, and Tim Hucho:<br>1) Descriptions of the considered mathematical models.2) Experimental data used for parameter estimation and validation.3) Code for parameter estimation, analysis and validation of the model using the MATLAB toolbox Data2Dynamics (https://github.com/Data2Dynamics/d2d).4) Visualisations of essential results.
DOI: 10.6084/m9.figshare.5991091
title: FIV vaccine with receptor epitopes results in neutralizing antibodies but does not confer resistance to challenge

description: Datasets for "FIV vaccine with receptor epitopes results in neutralizing antibodies but does not confer resistance to challenge"
DOI: 10.6084/m9.figshare.5991091.v1
title: FIV vaccine with receptor epitopes results in neutralizing antibodies but does not confer resistance to challenge

description: Datasets for "FIV vaccine with receptor epitopes results in neutralizing antibodies but does not confer resistance to challenge"
DOI: 10.6084/m9.figshare.5991040
title: Montagano et al. Eco.Lett. 2019 Data

description: <b>The strength of ecological subsidies across ecosystems: a latitudinal gradient of direct and indirect impacts on food webs (data)</b>
DOI: 10.6084/m9.figshare.5991040.v1
title: Montagano et al. Eco.Lett. 2019 Data

description: <b>The strength of ecological subsidies across ecosystems: a latitudinal gradient of direct and indirect impacts on food webs (data)</b>
DOI: 10.6084/m9.figshare.5991004
title: Factors
DOI: 10.6084/m9.figshare.5991004.v1
title: Factors Underpinning Array-vibrotactile Stimuli Integration on the Human Wrist

description: We present a comparative study of three modes of array-vibroactuators worn on the wrist to understand the factors of providing magnitude of a signal represented by a) a proportional frequency applied across a fixed number of actuators MA, b) a fixed frequency applied across a proportional number of actuators ML, and c)both frequency and the number of actuators being proportional to the signal magnitude MI. We first investigated the accuracy in localization tasks of right hand dominant participants, to test whether participants can distinguish between different vibro-actuator positions around the wrist. Secondly, we investigated whether there is a bias in perceptual accuracy for clockwise or counter clockwise presentation of vibration signals. Thirdly, we looked at perceptual response of participants with different step input signals for each proposed mode. Finally, we investigated the response for the three modes to sinusoidal input profiles with different magnitudes and periods.
DOI: 10.6084/m9.figshare.5990995
title: Data and code for Habitat amount hypothesis meta-analysis

description: All data and code used in the article
DOI: 10.6084/m9.figshare.5990995.v1
title: Data and code for Habitat amount hypothesis meta-analysis

description: All data and code used in the article
DOI: 10.6084/m9.figshare.5990977
title: Osteology of <i>Aristonectes quiriquinensis</i> (Elasmosauridae, Aristonectinae) from the upper Maastrichtian of central Chile

description: The upper Maastrichtian elasmosaurid plesiosaur <i>Aristonectes quiriquinensis</i> from central Chile is here redescribed following further preparation of the holotype. New cranial characters include a flattened skull with a caudal extension of the mandibular articulation far posterior to the occipital condyle; a very long, horizontal, and posteriorly oriented paroccipital process; mandible with restricted gape angle; and teeth oriented rostrally and not interlocking during occlusion. Postcranial features include the presence of very long extremities (ca. 3 m), whereas features of the caudal-most vertebrae suggest the presence of a horizontal caudal fin. Additionally, neuroanatomical features of <i>Aristonectes</i> are for the first time described based on a braincase cast. Integration of osteological features, anatomical comparisons, as well as taphonomic and environmental data strongly suggests that the foraging behavior of <i>Aristonectes quiriquinensis</i> incorporated a mix of engulfment and feeding from benthic sediments. This is a novelty among elasmosaurids, so far considered as mainly epipelagic feeders. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Otero, R. A., S. Soto-Acuña, and F. R. O'Keefe. 2018. Osteology of <i>Aristonectes quiriquinensis</i> (Elasmosauridae, Aristonectinae) from the upper Maastrichtian of central Chile. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2017.1408638.
DOI: 10.6084/m9.figshare.5990977.v1
title: Osteology of <i>Aristonectes quiriquinensis</i> (Elasmosauridae, Aristonectinae) from the upper Maastrichtian of central Chile

description: The upper Maastrichtian elasmosaurid plesiosaur <i>Aristonectes quiriquinensis</i> from central Chile is here redescribed following further preparation of the holotype. New cranial characters include a flattened skull with a caudal extension of the mandibular articulation far posterior to the occipital condyle; a very long, horizontal, and posteriorly oriented paroccipital process; mandible with restricted gape angle; and teeth oriented rostrally and not interlocking during occlusion. Postcranial features include the presence of very long extremities (ca. 3 m), whereas features of the caudal-most vertebrae suggest the presence of a horizontal caudal fin. Additionally, neuroanatomical features of <i>Aristonectes</i> are for the first time described based on a braincase cast. Integration of osteological features, anatomical comparisons, as well as taphonomic and environmental data strongly suggests that the foraging behavior of <i>Aristonectes quiriquinensis</i> incorporated a mix of engulfment and feeding from benthic sediments. This is a novelty among elasmosaurids, so far considered as mainly epipelagic feeders. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Otero, R. A., S. Soto-Acuña, and F. R. O'Keefe. 2018. Osteology of <i>Aristonectes quiriquinensis</i> (Elasmosauridae, Aristonectinae) from the upper Maastrichtian of central Chile. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2017.1408638.
DOI: 10.6084/m9.figshare.5990908
title: The Role of Prior Information in Inference on the Annualized Rates of Mass Shootings in the United States

description: While public debate over gun control in the United States has often hinged on individual public mass shooting incidents, legislative action should be informed by knowledge of the long-term evolution of these events. We present a new Bayesian model for the annualized rate of public mass shootings in the United States based on a Gaussian process with a time-varying mean function. While we present specific findings on long- and short-term trends of these shootings in the U.S., our focus is on understanding the role of model design and prior information in policy analysis. Using a Markov chain Monte Carlo inference technique, we explore the posterior consequences of different prior choices and explore correlations between hyperparameters. We demonstrate that the findings about the long-term evolution of the annualized rate of public mass shootings are robust to choices about prior information, while inferences about the timescale and amplitude of short-term variation depend sensitively on the prior. This work addresses the policy implications of implicit and explicit choices of prior information in model design and the utility of full Bayesian inference in evaluating the consequences of those choices.
DOI: 10.6084/m9.figshare.5990908.v1
title: The Role of Prior Information in Inference on the Annualized Rates of Mass Shootings in the United States

description: While public debate over gun control in the United States has often hinged on individual public mass shooting incidents, legislative action should be informed by knowledge of the long-term evolution of these events. We present a new Bayesian model for the annualized rate of public mass shootings in the United States based on a Gaussian process with a time-varying mean function. While we present specific findings on long- and short-term trends of these shootings in the U.S., our focus is on understanding the role of model design and prior information in policy analysis. Using a Markov chain Monte Carlo inference technique, we explore the posterior consequences of different prior choices and explore correlations between hyperparameters. We demonstrate that the findings about the long-term evolution of the annualized rate of public mass shootings are robust to choices about prior information, while inferences about the timescale and amplitude of short-term variation depend sensitively on the prior. This work addresses the policy implications of implicit and explicit choices of prior information in model design and the utility of full Bayesian inference in evaluating the consequences of those choices.
DOI: 10.6084/m9.figshare.5990896
title: PPAT Broad Mutational Scanning (BMS) data RData

description: This data contains fitness values for PPAT protein mutants described in:Plesa C, Sidore AM, Lubock N, Zhang D, Kosuri S. Multiplexed Gene Synthesis in Emulsions for Exploring Protein Functional Landscapes. Science 359, 343–347 (2018), DOI: 10.1126/science.aao5167<br><br>Contents of this file and the associated scripts are described here:https://github.com/KosuriLab/BMS_PPAT/blob/master/readme.md
DOI: 10.6084/m9.figshare.5990896.v1
title: PPAT Broad Mutational Scanning (BMS) data RData

description: This data contains fitness values for PPAT protein mutants described in:Plesa C, Sidore AM, Lubock N, Zhang D, Kosuri S. Multiplexed Gene Synthesis in Emulsions for Exploring Protein Functional Landscapes. Science 359, 343–347 (2018), DOI: 10.1126/science.aao5167<br><br>Contents of this file and the associated scripts are described here:https://github.com/KosuriLab/BMS_PPAT/blob/master/readme.md
DOI: 10.6084/m9.figshare.5990827
title: Datasets from Sexual phenotype drives variation in endocrine responses to social challenge in a quasi-clonal animal

description: Datastes of behavior recording and hormone analysis
DOI: 10.6084/m9.figshare.5990827.v1
title: Datasets from Sexual phenotype drives variation in endocrine responses to social challenge in a quasi-clonal animal

description: Datastes of behavior recording and hormone analysis
DOI: 10.6084/m9.figshare.5990815
title: Facets of Website Content

description: Content is of primary importance in the World Wide Web. In particular, subjective perceptions of content are known to influence a variety of user evaluations, thereby altering attitudes and behavioral outcomes. Thus, it is essential that individually experienced facets of content can be adequately assessed. In a series of seven studies, we create, validate, and benchmark a measure for users’ subjective view on web content. In the first six studies, a total of 3106 participants evaluated a sum of 60 websites. The resulting Web-CLIC questionnaire is a 12-item measure based on prior research on web content. It encloses four main facets of users’ content experience: <i>clarity, likeability, informativeness</i>, and <i>credibility</i> – jointly representing a general factor <i>subjective content perception</i>. Very high internal consistencies and high short- to medium-term retest reliabilities are demonstrated. Strong evidence for construct validity in terms of factorial, convergent, divergent, discriminative, concurrent, experimental, and predictive validity is found. In a seventh study, encompassing 7379 ratings on 120 websites, benchmarks for 10 different content domains and optimal cut points are provided. Overall, the present research suggests that the Web-CLIC is a sound measure of subjective content perception of both practical and theoretical benefit.
DOI: 10.6084/m9.figshare.5990815.v1
title: Facets of Website Content

description: Content is of primary importance in the World Wide Web. In particular, subjective perceptions of content are known to influence a variety of user evaluations, thereby altering attitudes and behavioral outcomes. Thus, it is essential that individually experienced facets of content can be adequately assessed. In a series of seven studies, we create, validate, and benchmark a measure for users’ subjective view on web content. In the first six studies, a total of 3106 participants evaluated a sum of 60 websites. The resulting Web-CLIC questionnaire is a 12-item measure based on prior research on web content. It encloses four main facets of users’ content experience: <i>clarity, likeability, informativeness</i>, and <i>credibility</i> – jointly representing a general factor <i>subjective content perception</i>. Very high internal consistencies and high short- to medium-term retest reliabilities are demonstrated. Strong evidence for construct validity in terms of factorial, convergent, divergent, discriminative, concurrent, experimental, and predictive validity is found. In a seventh study, encompassing 7379 ratings on 120 websites, benchmarks for 10 different content domains and optimal cut points are provided. Overall, the present research suggests that the Web-CLIC is a sound measure of subjective content perception of both practical and theoretical benefit.
DOI: 10.6084/m9.figshare.5989840
title: Breast Cancer Images & Segmentation - Correlation of Gene Expression Subtypes and Image Features

description: -Lesion-Raw-Anonymized-Images.zip (73 sets of images)-Contralateral-Raw-Anonymized-Images.zip (71 sets of images)<br>The above files decompress to folders specific for each subject having ID according to data provided in the original publicacion (http://dx.doi.org/10.1371/journal.pone.0193871).<br>The original (but anonymized) DICOM image is provided as a file "ResultRaw.dcm".<br>The radiologist trace is provided as "_Result.dcm" in lesions files.<br>Similarly, the control trace is provided as "_Result.dcm" in contralateral files.
DOI: 10.6084/m9.figshare.5987824
title: Data from Froy et al 2018.zip

description: Data from: Declining home range area predicts reduced late-life survival in two wild ungulate populations <br>H Froy, Börger L, Regan CE, Morris A, Morris S, Pilkington JG, Crawley MJ, Clutton-Brock TH, Pemberton JM & Nussey DH<br>Ecology Letters 2018<br>This folder contains supporting data for the above publication, plus a data description and general statement. <br>
DOI: 10.6084/m9.figshare.5987824.v1
title: Data from Froy et al 2018.zip

description: Data from: Declining home range area predicts reduced late-life survival in two wild ungulate populations <br>H Froy, Börger L, Regan CE, Morris A, Morris S, Pilkington JG, Crawley MJ, Clutton-Brock TH, Pemberton JM & Nussey DH<br>Ecology Letters 2018<br>This folder contains supporting data for the above publication, plus a data description and general statement. <br>
DOI: 10.6084/m9.figshare.5987680
title: Preview PLY file

description: an example PLY file, recorded with the 3D scanner
DOI: 10.6084/m9.figshare.5987680.v1
title: Preview PLY file

description: an example PLY file, recorded with the 3D scanner
DOI: 10.6084/m9.figshare.5987677
title: Preview JPG

description: example JPG file, recorded with the 3D scanner
DOI: 10.6084/m9.figshare.5987677.v1
title: Preview JPG

description: example JPG file, recorded with the 3D scanner
DOI: 10.6084/m9.figshare.5987674
title: Preview STL mesh

description: an example STL mesh (processed)
DOI: 10.6084/m9.figshare.5987674.v1
title: Preview STL mesh

description: an example STL mesh (processed)
DOI: 10.6084/m9.figshare.5987635
title: DNA metabarcoding of bulk soil to characterize belowground arthropod communities.

description: Taxa tables, metadata, repset
DOI: 10.6084/m9.figshare.5987635.v1
title: DNA metabarcoding of bulk soil to characterize belowground arthropod communities.

description: Taxa tables, metadata, repset