cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1120465.10fu
title: SH1120465.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1120466.10fu
title: SH1120466.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.c.3604085_d4
title: Additional file 4: of Global analysis of human duplicated genes reveals the relative importance of whole-genome duplicates originated in the early vertebrate evolution

description: Contains Table S1. The human Small-Scale and Whole-Genome duplicate pairs used in the study. (XLSX 705Â kb)
DOI: 10.6084/m9.figshare.c.3604106_d1
title: Additional file 1: of EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms

description: Table of 42 echinoderm specimens used for RNA-seq data that are contained in http://echinodb.uncc.edu . The BJ number is an internal reference code. The voucher number represents where any residual tissues and metadata are stored. RAW indicates the number of raw reads produced by Illumina sequencing. Quality filter and adapter removal indicates the number of reads remaining following fastxtoolkit quality filter of Q score &gt; 20 and removal of adapter regions. Percent reads remaining indicates the fraction of raw reads retained after quality filtering and adapter removal. Percentage Reads removed indicates the fraction of reads removed by quality filtering and adapter removal from the raw reads. Number of Amino Acid Sequences Participating in Orthologous Clusters indicates number of contigs for each species that participated in orthoclusters. Note that contigs may be partially overlapping and redundant. NCBI BioProject Accession number indicates where the contigs have been submitted to NCBI (note the orthoclusters only exist on http://echinodb.uncc.edu ). (XLSX 33 kb)
DOI: 10.6084/m9.figshare.28021013
title: Rohdea japonica raw GC-MS files

description: Metabolite extraction from Rohdea japonica
DOI: 10.6084/m9.figshare.28021013.v1
title: Rohdea japonica raw GC-MS files

description: Metabolite extraction from Rohdea japonica
DOI: 10.5517/ccdc.csd.cc268mdj
title: CCDC 2034077: Experimental Crystal Structure Determination

description: Related Article: Han-Yue Zhang, Zhi-Xu Zhang, Xian-Jiang Song, Xiao-Gang Chen, Ren-Gen Xiong|2020|J.Am.Chem.Soc.|142|20208|doi:10.1021/jacs.0c10686
description: Related Article: Chang-Qing Jing, Chao-Yang Chai, Xiang-Bin Han, Cheng-Dong Liu, Wei Wang, Tong-Yu Ju, Jing-Meng Zhang, Ming-Liang Jin, Qiong Ye, Wen Zhang|2024|Matter|7|991|doi:10.1016/j.matt.2023.12.011
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.c.3604163_d1
title: Additional file 5: of More comprehensive forensic genetic marker analyses for accurate human remains identification using massively parallel DNA sequencing

description: Human identity SNP results for 140-year-old skeletal remains from Deadwood, Dakota using the: A) Illumina® ForenSeq™ DNA Signature Prep Kit and B) HID-Ion AmpliSeq™ Identity Panel (E1 = elution #1; E2 = elution #2). Eighty of the human identity SNPs were common between the two panels (shown in bold). Concordant results were used to generate a composite profile (C). (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3604163_d2
title: Additional file 1: of More comprehensive forensic genetic marker analyses for accurate human remains identification using massively parallel DNA sequencing

description: Y-SNP data for three different bone powder fractions using the HID-Ion AmpliSeq™ Identity Panel and the Ion Torrent PGM® MPS platform (E1 = elution #1; E2 = elution #2). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3604163_d3
title: Additional file 7: of More comprehensive forensic genetic marker analyses for accurate human remains identification using massively parallel DNA sequencing

description: X-STR typing results for 140-year-old skeletal remains from Deadwood, South Dakota using the Illumina® ForenSeq™ DNA Signature Prep Kit and MiSeq® MPS platform (E1 = elution #1; E2 = elution #2). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3604163_d5
title: Additional file 4: of More comprehensive forensic genetic marker analyses for accurate human remains identification using massively parallel DNA sequencing

description: Phenotype-informative SNP analysis results for 140-year-old skeletal remains from Deadwood, Dakota using the: A) Illumina® ForenSeq™ DNA Signature Prep Kit and B) HID-Ion AmpliSeq™ Externally Visible Characteristics (EVC) Prototype Panel (E1 = elution #1; E2 = elution #2). Concordant results were used to generate a composite profile (C). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3604163_d6
title: Additional file 6: of More comprehensive forensic genetic marker analyses for accurate human remains identification using massively parallel DNA sequencing

description: Autosomal STR typing results for 140-year-old skeletal remains from Deadwood, Dakota using the Illumina® ForenSeq™ DNA Signature Prep Kit and MiSeq® MPS platform (E1 = elution #1; E2 = elution #2). (XLSX 12 kb)
DOI: 10.15468/dl.ecmen8
title: Occurrence Download

description: A dataset containing 313 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sphyraena japonica Bloch & Schneider, 1801",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 313 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032508-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3604223_d1
title: Additional file 1: of Open data 5Â years on: a case series of 12 freedom of information requests for regulatory data to the European Medicines Agency

description: Study data extraction sheet. (xlsx 31 kb)
DOI: 10.6084/m9.figshare.c.3604190_d10
title: Additional file 8: Table S2. of The genomic landscape of ribosomal peptides containing thiazole and oxazole heterocycles

description: Uniprot ID, precursor peptide sequence, TOMM family and organism producer for every TOMM producer. (XLSX 90 kb)
DOI: 10.6084/m9.figshare.c.3604235_d2
title: Additional file 3: of Initiating maize pre-breeding programs using genomic selection to harness polygenic variation from landrace populations

description: Simulation outputs and accompanying R code for its analysis. Analysis and decision support system for comparing simulation outputs of different designs of initiating a pre-breeding program from maize landrace populations. The ZIP file contains three files: SimulationOutput.RData â   Simulation outputs in the R data file format, SimulationFunctions.R â   R functions used for analysis, SimulationAnalysis.R â   R script for analysis (ZIP 6783 kb)
DOI: 10.6084/m9.figshare.c.3604259_d2
title: MOESM2 of Phosphotyrosine profiling of curcumin-induced signaling

description: Additional file 2: Table S1. A list of phosphoPSMs identified by MASCOT and SEQUEST.
DOI: 10.6084/m9.figshare.c.3604271_d1
title: Additional file 1: of 
                     Ehrlichia ruminantium infects Rhipicephalus microplus in West Africa

description: Alignment of the sequences generated in the present study with those of Ehrlichia spp. references strains retrieved from the GenBank database. (TXT 2 kb)
DOI: 10.6084/m9.figshare.c.3604259_d3
title: MOESM3 of Phosphotyrosine profiling of curcumin-induced signaling

description: Additional file 3: Table S2. A list of phosphopeptides quantitated by SILAC.
DOI: 10.15468/dl.tsvyum
title: Occurrence Download

description: A dataset listing the 56 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-151.5876 60.7323,-151.5876 60.40195,-152.13537 59.64311,-152.08557 59.21254,-151.6623 59.02084,-150.89045 59.13599,-149.89451 59.51704,-149.29695 59.81881,-148.37571 59.89383,-147.97734 60.14267,-147.85285 60.5247,-148.00224 60.75663,-148.42551 60.7931,-149.27205 60.90226,-149.96921 61.03517,-150.19329 61.10744,-150.54187 61.13149,-151.5876 60.7323))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Apidae, Andrenidae, Colletidae, Megachilidae)"
 ]
}

 The dataset's 56 records were derived from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032495-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3604328_d1
title: Additional file 1: of High genetic homogeneity points to a single introduction event responsible for invasion of Cotton leaf curl Multan virus and its associated betasatellite into China

description: GenBank accessions and sequences of Chinese isolates of CLCuMuVs in this study. (FAS 111Â kb)
DOI: 10.15468/dl.k8y3pe
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sphyraena jello Cuvier, 1829",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 35 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032509-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14424844
title: Geithain Löwen Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope):

https://kalliope-verbund.info/ead?ead.id=DE-611-BF-70963

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.6084/m9.figshare.c.3604409_d1
title: Additional file 2: of Discovery and characterization of a novel CCND1/MRCK gene fusion in mantle cell lymphoma

description: Table 1 of CCND1 miRNA interactions. (XLSX 16 kb)
DOI: 10.15468/dl.fp3mxs
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sphyraena acutipinnis Day, 1876",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032511-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pe57kg
title: Occurrence Download

description: A dataset containing 529 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plecturocebus moloch (Hoffmannsegg, 1807)"
 ]
}

 The dataset includes 529 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032510-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wge3tu
title: Occurrence Download

description: A dataset containing 5162 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Biodiversidad de un bosque seco tropical del Valle Medio del río Magdalena: evaluación integrada a través de multitaxones"
 ]
}

 The dataset includes 5162 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032512-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qr564
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heterololigo bleekeri (W.Keferstein, 1866)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 61 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032513-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zxn3ev
title: Occurrence Download

description: A dataset containing 7477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)",
 "Country is Brazil",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 7477 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032514-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2r3k8a
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Loligo bleekeri W.Keferstein, 1866",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032515-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmpvd8
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Insecta",
 "Geometry POLYGON ((-92.21567 14.83955, -92.12354 14.83955, -92.12354 14.92785, -92.21567 14.92785, -92.21567 14.83955))",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material citation)"
 ]
 }
 }
 ]
}

 The dataset includes 221 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032516-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fed4t6
title: Occurrence Download

description: A dataset containing 382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Helicolenus hilgendorfii (Döderlein, 1884)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 382 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032517-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p2xvus
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euparagia Cresson, 1879"
 ]
}

 The dataset includes 68 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032518-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r2e495
title: Occurrence Download

description: A dataset containing 1952 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Insecta",
 "Geometry POLYGON ((-92.20522 14.92946, -92.11128 14.92946, -92.11128 15.02004, -92.20522 15.02004, -92.20522 14.92946))",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material citation)"
 ]
 }
 }
 ]
}

 The dataset includes 1952 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032519-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdyusm
title: Occurrence Download

description: A dataset containing 175 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Martes pennanti (Erxleben, 1777)",
 "HasCoordinate is True",
 "Country is United States of America",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2015",
 "Month is greater than or equal to January",
 "Month is less than or equal to December",
 "HasGeospatialIssue is False"
 ]
}

 The dataset includes 175 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032520-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7hvaw4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sebastes hilgendorfii Döderlein, 1884",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032521-241126133413365/datasets/export for details.
DOI: 10.15468/dl.qkyupj
title: Occurrence Download

description: A dataset containing 2355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)",
 "Country is Colombia",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 2355 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032522-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h855aa
title: Occurrence Download

description: A dataset containing 589 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Insecta",
 "Geometry POLYGON ((-92.26365 14.99972, -92.17143 14.99972, -92.17143 15.09018, -92.26365 15.09018, -92.26365 14.99972))",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material citation)"
 ]
 }
 }
 ]
}

 The dataset includes 589 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032523-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3agg9d
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plecturocebus stephennashi (M.van Roosmalen, T.van Roosmalen & Mittermeier, 2002)"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032524-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ysh65b
title: Occurrence Download

description: A dataset containing 225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Metapenaeus ensis (De Haan, 1844)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 225 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032525-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60656/3610daee343f47da
title: Custom collection of MWR brightness temperature data from Bucharest, Cabauw, Chilbolton, Cluj-Napoca, Galați, and 14 other sites between 13 Nov and 12 Dec 2024
DOI: 10.15468/dl.3cbvuz
title: Occurrence Download

description: A dataset containing 2403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pekania pennanti (Erxleben, 1777)",
 "HasCoordinate is True",
 "Country is United States of America",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2024",
 "Month is greater than or equal to January",
 "Month is less than or equal to December",
 "HasGeospatialIssue is False"
 ]
}

 The dataset includes 2403 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032526-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18430/m39eex
title: X-ray diffraction data for the sTEP (PTPN5) at high resolution with citrate bound in active site (9EEX)
DOI: 10.15468/dl.emrg2f
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prionace glauca (Linnaeus, 1758)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032527-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18430/m38viy
title: X-ray diffraction data for the 15-Lipoxygenase-2 V427L (8VIY)