cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qxgag2
title: Occurrence Download

description: A dataset containing 5293 records in GBIF matching the query:
SELECT "year", GBIF_EEARGCode( 1000, decimalLatitude, decimalLongitude, COALESCE(coordinateUncertaintyInMeters, 1000) ) AS eeaCellCode, classKey, class, familyKey, family, COUNT(*) AS occurrences, MIN(COALESCE(coordinateUncertaintyInMeters, 1000)) AS minCoordinateUncertaintyInMeters, MIN(GBIF_TemporalUncertainty(eventDate)) AS minTemporalUncertainty, IF(ISNULL(classKey), NULL, SUM(COUNT(*)) OVER (PARTITION BY classKey)) AS classCount FROM occurrence WHERE occurrenceStatus = 'PRESENT' AND (continent = 'EUROPE' OR countrycode = 'BE') AND "year" &gt;= 1900 AND hasCoordinate = TRUE AND familyKey IS NOT NULL AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND (LOWER(identificationVerificationStatus) NOT IN ( 'unverified', 'unvalidated', 'not validated', 'under validation', 'not able to validate', 'control could not be conclusive due to insufficient knowledge', 'uncertain', 'unconfirmed', 'unconfirmed - not reviewed', 'validation requested' ) OR identificationVerificationStatus IS NULL)AND familyKey IN (5666)AND coordinateUncertaintyInMeters &lt;= 10000GROUP BY "year", eeaCellCode, classKey, class, familyKey, family ORDER BY "year" DESC, eeaCellCode ASC, familyKey ASC;

 The dataset's 5293 records were derived from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033168-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3617159_d5
title: Additional file 2: of Horizontal gene transfer of acetyltransferases, invertases and chorismate mutases from different bacteria to diverse recipients

description: Complete model selection test results for phylogenetic analysis of the FAM7 GNATs excluding poorly clustered taxa. (XLSX 98Â kb)
DOI: 10.6084/m9.figshare.27843420
title: dataset for paper ''Reactivatable stimulated emission depletion microscopy using fluorescence-recoverable nanographene''

description: dataset for paper ''Reactivatable stimulated emission depletion microscopy using fluorescence-recoverable nanographene''
DOI: 10.6084/m9.figshare.c.3617159_d6
title: Additional file 3: of Horizontal gene transfer of acetyltransferases, invertases and chorismate mutases from different bacteria to diverse recipients

description: Complete model selection test results for phylogenetic analysis of the remaining, initially poorly clustered FAM7 GNATs. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3617159_d7
title: Additional file 7: of Horizontal gene transfer of acetyltransferases, invertases and chorismate mutases from different bacteria to diverse recipients

description: Raw scores from model selection analyses of alternative models of sequence evolution. (XLS 519Â kb)
DOI: 10.6084/m9.figshare.c.3617159_d8
title: Additional file 10: of Horizontal gene transfer of acetyltransferases, invertases and chorismate mutases from different bacteria to diverse recipients

description: Codon usage analyses of FAM7 GNAT, INV and CM domains from Hoplolaimina. (XLS 519Â kb)
DOI: 10.6084/m9.figshare.c.3617159_d9
title: Additional file 8: of Horizontal gene transfer of acetyltransferases, invertases and chorismate mutases from different bacteria to diverse recipients

description: Raw data from comparisons of %GC content. (XLS 519Â kb)
DOI: 10.6084/m9.figshare.c.3617159_d11
title: Additional file 9: of Horizontal gene transfer of acetyltransferases, invertases and chorismate mutases from different bacteria to diverse recipients

description: cds from Hoplolaimina and donor bacteria selected for comparisons of %GC content with the respective distributions. (XLS 519Â kb)
DOI: 10.6084/m9.figshare.c.3617258_d1
title: MOESM1 of Enabling surface dependent diffusion in spatial simulations using Smoldyn

description: Additional file 1. Smoldyn configuration files used in this manuscript.
DOI: 10.6084/m9.figshare.c.3617246_d3
title: Additional file 1: Table S1. of Updated Rice Kinase Database RKD 2.0: enabling transcriptome and functional analysis of rice kinase genes

description: Rice kinases with patterns of anatomical expression. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3617261_d1
title: Additional file 3: of Favorable prognosis in colorectal cancer patients with co-expression of c-MYC and Ă -catenin

description: Raw data of c-MYC and Ă -catenin status obtained from cohort1. (XLSX 51 kb)
DOI: 10.4228/zalf.2005.126
title: Weather Data 2005, Muencheberg, Germany

description: The automatic weather station Müncheberg was installed in 1991 by the Leibniz-Centre for Agricultural Landscape Research (ZALF) e.V. and is managed by the Institute of Landscape System Analysis. The station is located within the municipality Müncheberg, district Märkisch-Oderland, state Brandenburg, Germany. Altitude in meter: 62 NN, Geographic latitude: 52,517681 N, Geographic longitude: 14,123200 E,Type: FMA 86. In 2001, the station was replaced by a new system of the same type. In 2005, data have been collected for: soil temperatur in 20cm depth (°C); soil temperatur in 5cm depth (°C); soil temperatur in 50cm depth (°C); soil temperatur in 10cm depth (°C); soil temperatur in 100cm depth (°C); global radiation (J/cm²); relative humidity (%); air temperature, 2m above ground (°C); precipitation(mm); wind velocity (m/s); evaporation (mm)
DOI: 10.6084/m9.figshare.c.3617246_d4
title: Additional file 2: Table S2. of Updated Rice Kinase Database RKD 2.0: enabling transcriptome and functional analysis of rice kinase genes

description: Rice kinases with abiotic stress responses. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3617264_d1
title: MOESM1 of Genotypic differences in intruder-evoked immediate early gene activation in male, but not female, vasopressin 1b receptor knockout mice

description: Additional file 1. Witchey et al. Data.xlsx contains the raw data for all of the experiments described in this manuscript.
DOI: 10.6084/m9.figshare.c.3617261_d2
title: Additional file 4: of Favorable prognosis in colorectal cancer patients with co-expression of c-MYC and Ă -catenin

description: Raw data of c-MYC and Ă -catenin status obtained from cohort2. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3617246_d5
title: Additional file 5: Table S5. of Updated Rice Kinase Database RKD 2.0: enabling transcriptome and functional analysis of rice kinase genes

description: Rice kinases with hormone responses. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3617297_d1
title: Additional file 1: of Lipodystrophy among HIV-infected patients: a cross-sectional study on impact on quality of life and mental health disorders

description: Table S1. Definition of lipodystrophy used in the LIPO group and metabolism day hospital.
DOI: 10.6084/m9.figshare.c.3617294_d2
title: Additional file 4: of Identification of plasma microRNAs as a biomarker of sporadic Amyotrophic Lateral Sclerosis

description: Results of Gene Ontology analysis from Metacoreâ ˘. (CSV 2Â kb)
DOI: 10.6084/m9.figshare.c.3617285_d5
title: Additional file 4: Table S3. of DNA methylation and gene expression dynamics during spermatogonial stem cell differentiation in the early postnatal mouse testis

description: GO terms and genes obtained by the GREAT analysis. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3617294_d3
title: Additional file 2: of Identification of plasma microRNAs as a biomarker of sporadic Amyotrophic Lateral Sclerosis

description: The most predictable target genes found by miRmap. (CSV 1Â kb)
DOI: 10.6084/m9.figshare.c.3617315_d2
title: Additional file 3: of Canine atlantoaxial optimal safe implantation corridors â   description and validation of a novel 3D presurgical planning method using OsiriXâ ˘

description: Calculation sheet used to analyze the 3D data extracted from ROI points. Equations demonstrated in Additional file 2 are pre-entered in this calculation sheet to automate the calculation process. (XLS 161Â kb)
DOI: 10.4228/zalf.2006.125
title: Weather Data 2006, Muencheberg, Germany

description: The automatic weather station Müncheberg was installed in 1991 by the Leibniz-Centre for Agricultural Landscape Research (ZALF) e.V. and is managed by the Institute of Landscape System Analysis.The station is located within the municipality Müncheberg, district Märkisch-Oderland, state Brandenburg, Germany. Altitude in meter: 62 NN, Geographic latitude: 52,517681 N, Geographic longitude: 14,123200 E,Type: FMA 86. In 2001, the station was replaced by a new system of the same type. In 2006, data have been collected for: soil temperatur in 20cm depth (°C); soil temperatur in 5cm depth (°C); soil temperatur in 50cm depth (°C); soil temperatur in 10cm depth (°C); soil temperatur in 100cm depth (°C); global radiation (J/cm²); relative humidity (%); air temperature, 2m above ground (°C); precipitation (mm); wind velocity(m/s); evaporation (mm)
DOI: 10.15468/dl.qk48v4
title: Occurrence Download

description: A dataset containing 228192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Spain",
 "TaxonKey is Milvus milvus (Linnaeus, 1758)",
 "Year 2014-2024"
 ]
}

 The dataset includes 228192 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033175-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3617363_d1
title: Additional file 9: of Integrated analyses using RNA-Seq data reveal viral genomes, single nucleotide variations, the phylogenetic relationship, and recombination for Apple stem grooving virus

description: SNVs of ASGV isolate Cuiguan in ASGV-infected sample. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3617363_d2
title: Additional file 2: of Integrated analyses using RNA-Seq data reveal viral genomes, single nucleotide variations, the phylogenetic relationship, and recombination for Apple stem grooving virus

description: Summary of de novo transcriptome assembly for ASGV-infected and ASGV-free apple samples. We assembled raw data from two different libraries using the Trinity program. The statistics of assembled contigs were calculated by TrinityStats.pl in the Trinity program. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3617366_d1
title: Additional file 1: of A pilot program of knowledge translation and implementation for newborn resuscitation using US Peace Corps Volunteers in rural Madagascar

description: Anonymised raw data. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3617363_d3
title: Additional file 10: of Integrated analyses using RNA-Seq data reveal viral genomes, single nucleotide variations, the phylogenetic relationship, and recombination for Apple stem grooving virus

description: Detailed information of complete genome sequences for ASGV and CTLV isolates used for phylogenetic and recombination analyses. (XLSX 10Â kb)
DOI: 10.17863/cam.15725
title: Research data supporting "Autogenous self-healing of cement with expansive minerals-II: Impact of age and the role of optimised expansive minerals"

description: This research data presents the results of expansive minerals (magnesium oxide, bentonite clay, and quicklime) optimum mix proportions with PC and the establishment of a quantitative approach for correlating autogenous healing to the age of contentious materials. Healing performances were assessed in terms of load recovery, crack sealing efficiency and gas permeability. The microstructure of materials was investigated using XRD, TGA and SEM-EDX.
DOI: 10.6084/m9.figshare.c.3617390_d4
title: Additional file 4: of RNA-seq studies using wheat PHYTOCHROME B and PHYTOCHROME C mutants reveal shared and specific functions in the regulation of flowering and shade-avoidance pathways

description: FDR-adj P &lt;0.01 PHYB/PHYC-regulated genes significant in just one experiment. In different tabs, 5320, PHYB-regulated genes, 1037 PHYC-regulated genes and 336 genes showing concerted regulation by PHYB and PHYC. Columns describe the genomic locus, the associated longest transcript which mapped to this locus, top BLAST hit and description and e-value, normalized counts from each library, fold-change (wild-type/phy-null mutant, genes highlighted green are upregulated in the phy-null mutant, genes highlighted red are downregulated in the phy-null mutant) and FDR-adjusted P values from DESeq and EdgeR (Padj &lt;0.01 highlighted in yellow). (XLSX 3100Â kb)
DOI: 10.6084/m9.figshare.c.3617378_d8
title: Additional file 1: of Genome-wide analysis of LTR-retrotransposons in oil palm

description: De novo consensus TE databases. Contains the E. oleifera (E08_denovoLibTEs.txt) and E. guineensis (p5_denovoLibTEs.txt) databases. (ZIP 15,038Â kb)
DOI: 10.6084/m9.figshare.c.3617408_d2
title: Additional file 2: Table S1. of Sex-specific differences in fetal and infant growth patterns: a prospective population-based cohort study

description: Adjusted linear regression analyses on fetal growth. (XLSX 12 kb)
DOI: 10.17863/cam.97235
title: Research data supporting "A chemical species ontology for data integration and knowledge discovery"

description: - inchi-list.csv: The file contains a list of InChI (International Chemical Identifier) given as input to the software agent (PubChemAgent) used to populate the knowledge graph. - OntoSpecies.owl: OntoSpecies TBox (see preprint for detailed explanation) containing the full class and relational definitions.
DOI: 10.17863/cam.83268
title: Research data supporting "General embedded cluster protocol for accurate modeling of oxygen vacancies in metal-oxides"

description: This dataset accompanies the paper: "General embedded cluster protocol for accurate modeling of oxygen vacancies in metal-oxides" published in the Journal of Chemical Physics (doi: 10.1063/5.0087031). In the folder '02-Simulation_Data', it contains the input and output files for all of the calculations shown in the main text and supplementary material of the paper. Additionally, The Jupyter notebook 'analyse_data.ipynb' is provided to analyse the data to reproduce the plotted graphs in the main text and supplementary material.
DOI: 10.6084/m9.figshare.c.3617426_d1
title: Additional file 8: Table S3. of Identification of Nicotiana benthamiana microRNAs and their targets using high throughput sequencing and degradome analysis

description: Targets of novel Nicotiana benthamiana specific miRNAs in samples. (XLSX 25 kb)
DOI: 10.4228/zalf.2007.129
title: Weather Data 2007, Muencheberg, Germany

description: The automatic weather station Müncheberg was installed in 1991 by the Leibniz-Centre for Agricultural Landscape Research (ZALF) e.V. and is managed by the Institute of Landscape System Analysis. The station is located within the municipality Müncheberg, district Märkisch-Oderland, state Brandenburg, Germany. Altitude in meter: 62 NN, Geographic latitude: 52,517681 N, Geographic longitude: 14,123200 E,Type: FMA 86. In 2001, the station was replaced by a new system of the same type. In 2007, data have been collected for: soil temperatur in 20cm depth (°C); soil temperatur in 5cm depth (°C); soi ltemperatur in 50cm depth (°C); soil temperatur in 10cm depth (°C); soil temperatur in 100cm depth (°C); global radiation (J/cm²); relative humidity (%); air temperature, 2m above ground (°C); precipitation (mm); wind velocity (m/s); evaporation (mm)
DOI: 10.6084/m9.figshare.c.3617444_d4
title: Additional file 3: of Countdown to 2015 country case studies: systematic tools to address the â  black boxâ   of health systems and policy assessment

description: Health Policy Tracer Indicators Dashboard. (XLS 23Â kb)
DOI: 10.17863/cam.10959
title: Raw Data supporting Article: Oxidation state-dependent binding properties of the active site in a Mo-containing formate dehydrogenase

description: Raw Data supporting Article: Oxidation state-dependent binding properties of the active site in a Mo-containing formate dehydrogenase
DOI: 10.17863/cam.84437
title: Research data supporting "Computational in-sights on the origin of enantioselectivity in reactions with diarylprolinol silyl ether catalysts via a radical pathway"

description: In this project, the stereoselective reaction of 1,4-dicarbonyls with diarylprolinol silyl ether catalysts was studied with force field and density functional theory calculations. A robust procedure has been developed for computational investigations of large and flexible chemical systems based on the conformation labelling system, ONIOM calculations and Python scripting. The change in enantiomeric excess due to variations in the catalyst can be explained based on conformational changes and structural deformations. In the enantioselectivity-determining radical addition step, the iminium in the most stable SR transition state (TS) takes up the conformation of the most stable ground state iminium (EE). The conjugated iminium in the SS TS adopts an EZ conformation to avoid potential structural deformations due to radical attacks from the more sterically hindered position. For systems with simpler catalysts, the iminium is EE for both, as the steric hindrance imposed by the substituent is not sufficient to cause this large structural deformation, and so the reaction shows poor enantioselectivity. The key DFT structures are included in the ‘SI_key_structure’ folder as Gaussian calculation output files.
DOI: 10.6084/m9.figshare.c.3617456_d2
title: Additional file 5: Table S3. of Deciphering common and specific transcriptional immune responses in pea towards the oomycete pathogens Aphanomyces euteiches and Phytophthora pisi

description: List of differentially expressed pea genes during interaction with A. euteiches and P. pisi. Microsoft Excel spreadsheet containing M. truncatula gene IDs (column A), annotation (column B), minimum E-value (the lowest E-value of the ten best hits, column C), mean similarity (the average similarity value of the ten best hits, column E) and enzyme code (column E) provided by Blast2GO. Ratio of the log2 expression between each treatment and the corresponded control samples is presented in column F to I. Genes are clustered based on their expression patterns as shown in Fig.Â 2. Sheets 2 and 3 represent the genes in sub-clusters 1b and 2a, respectively, which are mainly induced in response to both pathogens at 6 hpi. Sheets 1 and 4 represent the genes in sub-clusters 1a and 2b that are specifically induced in response to P. pisi and A. euteiches at 6 hpi, respectively. Sheets 6 and 7 represent the genes in sub-clusters 3b and 4a, respectively, which are induced in response to both pathogens at 20 hpi. Sheets 5 and 8 represent the genes in sub-clusters 3a and 4b that are specifically induced at 20 hpi in response to A. euteiches and P. pisi, respectively. (XLSX 280 kb)
DOI: 10.6084/m9.figshare.c.3617426_d9
title: Additional file 1: Table S1. of Identification of Nicotiana benthamiana microRNAs and their targets using high throughput sequencing and degradome analysis

description: MFEI values of conserved and other known miRNAs in Nicotiana benthamiana. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3617456_d3
title: Additional file 2: Table S1. of Deciphering common and specific transcriptional immune responses in pea towards the oomycete pathogens Aphanomyces euteiches and Phytophthora pisi

description: List of all pea responsive genes to infection with A. euteiches. Microsoft Excel spreadsheet containing complete list of pea responsive genes to A. euteiches infection at 6 hpi (A6UP, A6DOWN) and 20 hpi (A20UP, A20DOWN). All genes have P ≤ 0.05 on log2 of fold change (FC) expression levels compared to the control samples. Each gene is presented by the M. truncatula gene ID (column A), annotation (column B), minimum E-value (the lowest E-value of the ten best hits) (column C), mean similarity (the average similarity value of the ten best hits) (column D) and enzyme code (column E) provided by Blast2GO. Ratios of log2 on the FC between each treatment and the corresponding control samples are presented in column F. Differentially expressed genes (P ≤ 0.05, ≥ 1.5 fold induction or ≤ 0.67 fold repression) are marked with light blue colour. (XLSX 465 kb)
DOI: 10.6084/m9.figshare.c.3617456_d4
title: Additional file 7: Table S4. of Deciphering common and specific transcriptional immune responses in pea towards the oomycete pathogens Aphanomyces euteiches and Phytophthora pisi

description: List of differentially expressed pea genes involved in signalling during interaction with A. euteiches and P. pisi. Microsoft Excel spreadsheet containing M. truncatula gene IDs (column A), annotation (column B), minimum E-value (the lowest E-value of the ten best hits, column C), mean similarity (the average similarity value of the ten best hits, column E) and enzyme code (column E) provided by Blast2GO. Ratio of the log2 expression between each treatment and the corresponded control samples is presented in column F to I. Genes are clustered based on their expression patterns as shown in Fig.Â 3a. Sheet 5 represents all the possible resistance genes involved in signalling pathways with the gene ID (column A), heat map of ratio of the log2 expression patterns (column B to E), annotation (column F) and domain structure and family generated by InterPro (column G). (XLSX 71 kb)
DOI: 10.6084/m9.figshare.c.3617471_d1
title: Additional file 1: of UK survey of occupational therapistâ  s and physiotherapistâ  s experiences and attitudes towards hip replacement precautions and equipment

description: Survey. (XLS 205 kb)
DOI: 10.6084/m9.figshare.c.3617468_d1
title: Additional file 10: of Deep divergence and rapid evolutionary rates in gut-associated Acetobacteraceae of ants

description: Alignment file of 1,333 nucleotides and 36 taxa. This alignment was used for phylogenetic inference in Fig.Â 2 and Additional file 6. (TXT 48 kb)