cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc1q6qm8
title: CCDC 1585390: Experimental Crystal Structure Determination

description: Related Article: Mikko M. Hänninen, Antonio J. Mota, Reijo Sillanpää, Sourav Dey, Gunasekaran Velmurugan, Gopalan Rajaraman, Enrique Colacio|2018|Inorg.Chem.|57|3683|doi:10.1021/acs.inorgchem.7b02917
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q7m6s
title: CCDC 1586245: Experimental Crystal Structure Determination

description: Related Article: Tatiana A. Shestimerova, Natallia A. Yelavik, Andrei V. Mironov, Alexey N. Kuznetsov, Mikhail A. Bykov, Anastasia V. Grigorieva, Valentina V. Utochnikova, Leonid S. Lepnev, Andrei V. Shevelkov|2018|Inorg.Chem.|57|4077|doi:10.1021/acs.inorgchem.8b00265
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q7m7t
title: CCDC 1586246: Experimental Crystal Structure Determination

description: Related Article: Tatiana A. Shestimerova, Natallia A. Yelavik, Andrei V. Mironov, Alexey N. Kuznetsov, Mikhail A. Bykov, Anastasia V. Grigorieva, Valentina V. Utochnikova, Leonid S. Lepnev, Andrei V. Shevelkov|2018|Inorg.Chem.|57|4077|doi:10.1021/acs.inorgchem.8b00265
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/d9534ad732dc977032a7864042f331ab
title: Florida Bay Seagrass Canopy Temperature Data, Everglades National Park (FCE), South Florida from September 2000 to Present

description: Point measurements of hourly temperature readings at the canopy height of a seagrass bed collected during visits to TS/Ph 7a, TS/Ph8, TS/Ph9, TS/Ph10 and TS/Ph11. Graphic representation of seagrass status and trends monitoring data and other related information can be located at http://serc.fiu.edu/seagrass/!CDreport/DataHome.htm
DOI: 10.17632/dfwwjmtmfh.1
title: Data for: Asymmetric ommatidia count and behavioural lateralization in the ant Temnothorax albipennis

description: Workers of the house-hunting ant Temnothorax albipennis rely on visual edge following and landmark recognition to navigate their rocky environment, and they also exhibit a leftward turning bias when exploring unknown nest sites. We used electron microscopy to count the number of ommatidia composing the compound eyes of workers, males and queens, to make an approximate assessment of their relative sampling resolution; and to establish whether there is an asymmetry in the number of ommatidia composing the workers’ eyes, which might provide an observable, mechanistic explanation for the turning bias. We hypothesise that even small asymmetries in relative visual acuity between left and right eyes could be magnified by developmental experience into a symmetry-breaking turning preference that results in the inferior eye pointing toward the wall. Fifty-six workers were examined: 45% had more ommatidia in the right eye, 36% more in the left, and 20% an equal number. A tentative connection between relative ommatidia count for each eye and turning behaviour was identified, with a stronger assessment of behavioural lateralization before imaging and a larger sample suggested for further work. There was a clear sexual dimorphism in ommatidia counts between queens and males.
DOI: 10.5281/zenodo.1205294
title: Leap_System1

description: Eval set submission 4
DOI: 10.5281/zenodo.1205519
title: (Tm3_Asph-Cis)  Popc_512_Tm3_Asph_10_5Up_5Down_Nacl_150Mm_310K

description: System description<br>
-------------------<br>
- Title: (TM3_ASPH-CIS) Simulation POPC_512_TM3_ASPH_10_5up_5down_NaCl_150mM_310K membrane

- Description: Simulation of a POPC membrane containing ten LAPTM4B-TM3_ASPH peptides using charmm36 at 310K. (TM3 peptides have cis peptides bonds by mistake)

- MD engine: gromacs 5.0.4

- Force field: charmm36

- Temperature: 310K

- Simulation time: 2000ns

- Saving frequency: 100ps

- Molecular content:<br>
TM3_ASPH          10<br>
POPC             512<br>
SOL            20480<br>
NA                55<br>
CL                55

- Other information:<br>
  * Membrane containing LAPTM4B TM3 peptides.<br>
  * ASP 202 is in protonated form<br>
  * 5 peptides pointing up/ 5 peptides pointing down

- Problems<br>
  * By mistake some peptides bonds in TM3 are in CIS configuration
DOI: 10.5281/zenodo.1205520
title: (Tm3_Asph-Cis)  Popc_512_Tm3_Asph_10_5Up_5Down_Nacl_150Mm_310K

description: System description<br>
-------------------<br>
- Title: (TM3_ASPH-CIS) Simulation POPC_512_TM3_ASPH_10_5up_5down_NaCl_150mM_310K membrane

- Description: Simulation of a POPC membrane containing ten LAPTM4B-TM3_ASPH peptides using charmm36 at 310K. (TM3 peptides have cis peptides bonds by mistake)

- MD engine: gromacs 5.0.4

- Force field: charmm36

- Temperature: 310K

- Simulation time: 2000ns

- Saving frequency: 100ps

- Molecular content:<br>
TM3_ASPH          10<br>
POPC             512<br>
SOL            20480<br>
NA                55<br>
CL                55

- Other information:<br>
  * Membrane containing LAPTM4B TM3 peptides.<br>
  * ASP 202 is in protonated form<br>
  * 5 peptides pointing up/ 5 peptides pointing down

- Problems<br>
  * By mistake some peptides bonds in TM3 are in CIS configuration
DOI: 10.17632/6rj6psgrbn.1
title: How Party-Voter Linkages Increase Partisanship in Georgia
DOI: 10.17632/7spn2vwprk.2
title: Articulatory dynamics of (de-)gemination in Dutch

description: Data and R scripts from a study on fake geminate rhotics in Standard Dutch
DOI: 10.17632/cn3vjzy3nt.1
title: Dataset for: EXTENDED WINTERS ENTAIL LONG-TERM COSTS FOR INSECT OFFSPRING REARED IN AN OVERWINTER BURROW

description: This is the corresponding dataset to the peer-reviewed paper titled "EXTENDED WINTERS ENTAIL LONG-TERM COSTS FOR INSECT OFFSPRING REARED IN AN OVERWINTER BURROW" published in the Journal of Thermal Biology by Maximilian Körner, Susanne Foitzik and Joel Meunier. Data analysis was conducted in R, details can be found in the publication. Additional and circumstantial data not used in the publication and ineffectual to the analyses has been excluded.
DOI: 10.17632/j64vy9gz5t.1
title: How Party-Voter Linkages Increase Partisanship in Georgia
DOI: 10.17632/x7s2ts5pv3.1
title: Diversity and evolution of chitin synthases in oomycetes

description: Supporting data for our paper on "Diversity and evolution of chitin synthases in oomycetes". File S1 contains the full-length CHS sequences separated into clades (P1 and 2, S1-6, E. dicksonii, and 3 outgroups). S2 is like S1, but CHS motifs a-h only. Files S3a and S3b contains the sequences spanning the MIT domain. S3b contains an alternative version where the Pfam-identified domains where picked out from sequences alignment by MUSCLE. Files S4a-S4c contains the multiple sequence alignments for full-length CHSs from Clustal Omega v1.2.4, MAFFT v7.215, and MUSCLE v3.8.31. Files S5a-S5c contains the multiple sequence alignments for the MIT domain from Clustal Omega v1.2.4, MAFFT v7.215, and MUSCLE v3.8.31. Files S6a-S6c contains the multiple sequence alignments for the MIT domain from Clustal Omega v1.2.4, MAFFT v7.215, and MUSCLE v3.8.31. S7 contains the multiple sequence alignment used to generate supplementary fig. S5. S8a and S8b contains the tree in Newick format that where used to produced Suppl Figure S7. Files S9a-S9c contains the multiple sequence alignments from Clustal Omega v1.2.4, MAFFT v7.215, and MUSCLE v3.8.31 for the MIT domain and its upstream region of the Pfam seed. NOTE: these multiple sequence alignments are in a different format than in the other supplementary files due to long sequence identifiers
DOI: 10.17632/xh75bp2dmy.1
title: Antibiotic KAP among students of a Nigerian University

description: We collected data on the Knowledge, attitude and practices among students as it relates to antibiotics and antibiotic resistance. A structured question was used in this cross-sectional study. Questionnaire and SPPS data file have been attached
DOI: 10.5517/ccdc.csd.cc1qcqkc
title: CCDC 1590193: Experimental Crystal Structure Determination

description: Related Article: Feifei Fang, Chunmei Zhang, Chaofan Zhou, Yazhou Li, Yu Zhou, Hong Liu|2018|Org.Lett.|20|1720|doi:10.1021/acs.orglett.8b00103
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1ysvcy
title: CCDC 1811341: Experimental Crystal Structure Determination

description: Related Article: Daniel Nuevo, Macarena Poyatos, Eduardo Peris|2018|Organometallics|37|3407|doi:10.1021/acs.organomet.8b00087
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/8y5wm8887b.3
title: Profile hidden Markov models for the identification of DNMT and TET homologs in insects

description: Profile hidden Markov models built from DNMT and TET arthropod sequences. Orthologous sequences of each DNMT and TET were downloaded from OrthoDB(http://www.orthodb.org/). 1. DNMT1: DNA methyltransferase 1 2. TRDMT1: tRNA aspartic acid methyltransferase 2 (also known as DNA methyltransferase 2 or DNMT2) 3. DNMT3: DNA methyltransferase 3 4. TET: Ten-eleven translocation methylcytosine dioxygenase
DOI: 10.17632/hgdfn5ctmt.1
title: Replication data for the article: How Party-Voter Linkages Increase Partisanship in Georgia
DOI: 10.17632/mf95d3swv5.1
title: Data and Analysis Code for 'Comparing multiple statistical methods for inverse prediction in nuclear forensics applications'

description: R script and data to reproduce some of the results in 'Comparing multiple statistical methods for inverse prediction in nuclear forensics applications'
DOI: 10.17632/t6mkk42py3.1
title: How Party-Voter Linkages Increase Partisanship in Georgia
DOI: 10.5517/ccdc.csd.cc1yttn7
title: CCDC 1812280: Experimental Crystal Structure Determination

description: Related Article: Baker Jawabrah Al-Hourani, Basem F. Ali, Zaher Judeh, Musa I. El-Barghouthi, Wajdy Al-Awaida, Yasmin Snobar, Fatima El Soubani, Khalid Matalka, Frank Wuest|2018|J.Mol.Struct.|1164|317|doi:10.1016/j.molstruc.2018.03.083
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1yttp8
title: CCDC 1812281: Experimental Crystal Structure Determination

description: Related Article: Baker Jawabrah Al-Hourani, Basem F. Ali, Zaher Judeh, Musa I. El-Barghouthi, Wajdy Al-Awaida, Yasmin Snobar, Fatima El Soubani, Khalid Matalka, Frank Wuest|2018|J.Mol.Struct.|1164|317|doi:10.1016/j.molstruc.2018.03.083
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/3p2tr9svnx.1
title: Ant density and EFN morphology

description: No correlation between environmental ant density and EFN gland morphology
DOI: 10.17632/f9fmrj98n3.1
title: The same hippocampal CA1 population simultaneously codes temporal information over multiple timescales

description: One-photon calcium imaging data in right CA1 of mice traversing a rectangular track and treadmill run for 10 s. Contact William Mau (wmau@bu.edu) for details.
DOI: 10.5281/zenodo.1205540
title: (Tm3-Cis) Simulation Popc_512_Tm3_10_5Up_5Down_Nacl_150Mm_310K Membrane

description: System description<br>
-------------------<br>
- Title: (TM3-CIS) Simulation POPC_512_TM3_10_5up_5down_NaCl_150mM_310K membrane

- Description: Simulation of a POPC membrane containing ten LAPTM4B-TM3 peptides using charmm36 at 310K. (TM3 peptides have cis peptides bonds by mistake)

- MD engine: gromacs 5.0.4

- Force field: charmm36

- Temperature: 310K

- Simulation time: 2000ns

- Saving frequency: 100ps

- Molecular content:<br>
TM3               10<br>
POPC             512<br>
SOL            20470<br>
NA                65<br>
CL                55

- Other information:<br>
  * Membrane containing LAPTM4B TM3 peptides.<br>
  * 5 peptides pointing up/ 5 peptides pointing down

- Problems<br>
  * By mistake some peptides bonds in TM3 are in CIS configuration
DOI: 10.5281/zenodo.1205541
title: (Tm3-Cis) Simulation Popc_512_Tm3_10_5Up_5Down_Nacl_150Mm_310K Membrane

description: System description<br>
-------------------<br>
- Title: (TM3-CIS) Simulation POPC_512_TM3_10_5up_5down_NaCl_150mM_310K membrane

- Description: Simulation of a POPC membrane containing ten LAPTM4B-TM3 peptides using charmm36 at 310K. (TM3 peptides have cis peptides bonds by mistake)

- MD engine: gromacs 5.0.4

- Force field: charmm36

- Temperature: 310K

- Simulation time: 2000ns

- Saving frequency: 100ps

- Molecular content:<br>
TM3               10<br>
POPC             512<br>
SOL            20470<br>
NA                65<br>
CL                55

- Other information:<br>
  * Membrane containing LAPTM4B TM3 peptides.<br>
  * 5 peptides pointing up/ 5 peptides pointing down

- Problems<br>
  * By mistake some peptides bonds in TM3 are in CIS configuration
DOI: 10.5517/ccdc.csd.cc1yx9pv
title: CCDC 1814668: Experimental Crystal Structure Determination

description: Related Article: Li-Na Xiao, Li-Xia Yang, Xiao-Di Du, Qing Lan, Hao Zhang, Xiao-Bing Cui|2018|Polyhedron|147|42|doi:10.1016/j.poly.2018.03.010
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1yx9qw
title: CCDC 1814669: Experimental Crystal Structure Determination

description: Related Article: Li-Na Xiao, Li-Xia Yang, Xiao-Di Du, Qing Lan, Hao Zhang, Xiao-Bing Cui|2018|Polyhedron|147|42|doi:10.1016/j.poly.2018.03.010
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1yx9rx
title: CCDC 1814670: Experimental Crystal Structure Determination

description: Related Article: Li-Na Xiao, Li-Xia Yang, Xiao-Di Du, Qing Lan, Hao Zhang, Xiao-Bing Cui|2018|Polyhedron|147|42|doi:10.1016/j.poly.2018.03.010
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1yx9sy
title: CCDC 1814671: Experimental Crystal Structure Determination

description: Related Article: Li-Na Xiao, Li-Xia Yang, Xiao-Di Du, Qing Lan, Hao Zhang, Xiao-Bing Cui|2018|Polyhedron|147|42|doi:10.1016/j.poly.2018.03.010
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/4yk9sw6wg5.1
title: Macro code for analysis of brightfield images in ImageJ sofware

description: This code enables for quantification of thrombus at the base on SAC measurement
DOI: 10.17632/53b5wyj97m.1
title: mouseIgG_3strains

description: The mzXML files contain measurements obtained in an experiment designed to compare Fc-linked IgG N-glycosylation profiles of mouse immunoglobulin G with LC-MS of tryptic glycopeptides. IgG was affinity purified on protein G monolithic plates, digested with trypsin and analysed on a nanoACQUITY UPLC system (Waters, USA) coupled to a Compact MS (Bruker Daltonics, Bremen, Germany) in the gradient of 80% acetonitrile in 0.1% trifluoroacetic acid (for the detailed description of the LC-MS analysis see Pezer, M. et al. Effects of allergic diseases and age on the composition of serum IgG glycome in children. Sci. Rep. 6, 33198 (2016)) We have applied our method to a sample set of 3 inbred strains: BALB/c, C57BL6 and C3H. All animals were males of 15 weeks old. We observed differences in subclass-specific and strain-specific N-glycosylation of IgG, which suggests a significant genetic component in the regulation of Fc-linked IgG N-glycosylation. Description of the samples could be found in the attached excel sheet.
DOI: 10.17632/9zdbd6j4r9.1
title: MIgGGly-TechnicalVariation-part1

description: This dataset contains mzXML files obtained in an experiment designed to assess technical variation introduced by sample preparation procedure for the analysis of Fc-linked IgG N-glycosylation profiles of mouse immunoglobulin G with LC-MS of tryptic glycopeptides. To test the technical variation introduced by each step we used replicates of combined BALB/c and C3H mouse serum pool sample. The serum pool was aliquoted by 100 µl per sample onto protein G monolithic plate for IgG isolation. Since the starting serum sample was pooled, all the variation observed in the sample measurements is purely technical. There were 5 different conditions designated as A-E in the experiment, each condition included 18 or 19 replicates: A - each of the 19 replicates on from IgG isolation was treated separately, so each sample measurement contains the variation originating from all sample preparation steps; B - samples were pooled after step 1 of sample preparation and aliquoted before step 2, sample measurements contain technical variation resulting from steps 2-5; C - samples were pooled and aliquoted after steps 1 and 2, the measurements contain technical variation resulting from steps 3-5; D - samples were pooled after steps 1-3, measurements contain technical variation from steps 4-5; E - samples were pooled after steps 1-4, measurements contain technical variation resulting only from step 5 which includes MS analysis and subsequent data processing. Tryptic glycopeptides were analysed on a nanoACQUITY UPLC system (Waters, USA) coupled to a Compact MS (Bruker Daltonics, Bremen, Germany) in the gradient of 80% acetonitrile in 0.1% trifluoroacetic acid (for the detailed description of the LC-MS analysis see Pezer, M. et al. Effects of allergic diseases and age on the composition of serum IgG glycome in children. Sci. Rep. 6, 33198 (2016)) We observed that the IgG isolation procedure introduces most of the variation. This folder contains only a part of the data. To download the complete dataset please also download "MIgGGly-TechnicalVariation-part2" dataset: http://dx.doi.org/10.17632/y3t2kkfx7v.1 Description of the samples could be found in the attached excel sheet.
DOI: 10.17632/y3t2kkfx7v.1
title: mouseIgG_VariationTest_part2

description: This dataset contains mzXML files obtained in an experiment designed to assess technical variation introduced by sample preparation procedure for the analysis of Fc-linked IgG N-glycosylation profiles of mouse immunoglobulin G with LC-MS of tryptic glycopeptides. To test the technical variation introduced by each step we used replicates of combined BALB/c and C3H mouse serum pool sample. The serum pool was aliquoted by 100 µl per sample onto protein G monolithic plate for IgG isolation. Since the starting serum sample was pooled, all the variation observed in the sample measurements is purely technical. There were 5 different conditions designated as A-E in the experiment, each condition included 18 or 19 replicates: A - each of the 19 replicates on from IgG isolation was treated separately, so each sample measurement contains the variation originating from all sample preparation steps; B - samples were pooled after step 1 of sample preparation and aliquoted before step 2, sample measurements contain technical variation resulting from steps 2-5; C - samples were pooled and aliquoted after steps 1 and 2, the measurements contain technical variation resulting from steps 3-5; D - samples were pooled after steps 1-3, measurements contain technical variation from steps 4-5; E - samples were pooled after steps 1-4, measurements contain technical variation resulting only from step 5 which includes MS analysis and subsequent data processing. We observed that the IgG isolation procedure introduces most of the variation. This folder contains only a part of the data. To download the complete dataset please also download "MIgGGly-TechnicalVariation-part1" dataset: http://dx.doi.org/10.17632/9zdbd6j4r9.1 Description of the samples could be found in the excel sheet attached with the part 1 of the dataset.
DOI: 10.17632/zz7vd3t964.1
title: Data for: Invasion risk of clumping and running bamboo species in the continental United States
DOI: 10.5281/zenodo.1205851
title: Data For S1 Fig Of Plos Biology The Cybathlon Bci Race: Successful Longitudinal Mutual Learning With Two Tetraplegic Users

description: BCI feature discriminancy maps per training month for pilots P1 and P2 after artifact removal.
DOI: 10.5281/zenodo.1205852
title: Data For S1 Fig Of Plos Biology The Cybathlon Bci Race: Successful Longitudinal Mutual Learning With Two Tetraplegic Users

description: BCI feature discriminancy maps per training month for pilots P1 and P2 after artifact removal.
DOI: 10.5281/zenodo.1205859
title: Data For S2 Fig Of Plos Biology The Cybathlon Bci Race: Successful Longitudinal Mutual Learning With Two Tetraplegic Users

description: BCI SMR feature discriminancy per training modality for pilots P1 and P2
DOI: 10.5281/zenodo.1205860
title: Data For S2 Fig Of Plos Biology The Cybathlon Bci Race: Successful Longitudinal Mutual Learning With Two Tetraplegic Users

description: BCI SMR feature discriminancy per training modality for pilots P1 and P2
DOI: 10.5281/zenodo.1205865
title: Test2_Baseline

description: test2_baseline