cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6094157.v1
title: Additional file 2: of A simulation study investigating power estimates in phenome-wide association studies

description: Summary Results:Â The summary results used to generate the figures. (XLSX 56Â kb)
DOI: 10.6084/m9.figshare.6094148
title: MOESM2 of The use of driving endonuclease genes to suppress mosquito vectors of malaria in temporally variable environments

description: Additional file 2. Rainfall model fitter. A MathematicaÂ file which fits the rainfall model paper to precipitation data.
DOI: 10.6084/m9.figshare.6094148.v1
title: MOESM2 of The use of driving endonuclease genes to suppress mosquito vectors of malaria in temporally variable environments

description: Additional file 2. Rainfall model fitter. A MathematicaÂ file which fits the rainfall model paper to precipitation data.
DOI: 10.6084/m9.figshare.6094121
title: MOESM1 of The use of driving endonuclease genes to suppress mosquito vectors of malaria in temporally variable environments

description: Additional file 1. RainDataBÂ contains the daily precipitation data for Bamako, Mali and Mbita, Kenya, obtained fromÂ European Centre for Medium-Range Weather Forecasts [29].
DOI: 10.6084/m9.figshare.6094121.v1
title: MOESM1 of The use of driving endonuclease genes to suppress mosquito vectors of malaria in temporally variable environments

description: Additional file 1. RainDataBÂ contains the daily precipitation data for Bamako, Mali and Mbita, Kenya, obtained fromÂ European Centre for Medium-Range Weather Forecasts [29].
DOI: 10.6084/m9.figshare.6094106
title: Additional file 1: of Feline gastrointestinal parasitism in Greece: emergent zoonotic species and associated risk factors

description: Table S1. Information regarding origin, gender, ownership status, living conditions, age and infection status for the various detected parasite taxa for each sampled animal. Table S2. Coding for data in Table S1. Table S3. Number and prevalence (%) of infected (per parasite taxon) cats in all sampled regions of Greece. (XLSX 78 kb)
DOI: 10.6084/m9.figshare.6094106.v1
title: Additional file 1: of Feline gastrointestinal parasitism in Greece: emergent zoonotic species and associated risk factors

description: Table S1. Information regarding origin, gender, ownership status, living conditions, age and infection status for the various detected parasite taxa for each sampled animal. Table S2. Coding for data in Table S1. Table S3. Number and prevalence (%) of infected (per parasite taxon) cats in all sampled regions of Greece. (XLSX 78 kb)
DOI: 10.6084/m9.figshare.6094103
title: Additional file 1: of Coordinated responses to individual tumor antigens by IgG antibody and CD8+ T cells following cancer vaccination

description: Table S1. 4T1 Exome Overlap. Comparison of independent 4T1 whole exome sequencing analysis and prior literature. Table S2. Preliminary IgG Peptide Array. Table S3. IgG Peptide Array and ELISAs. Table S4. TMT Mass Spectrometry. (XLSX 2550 kb)
DOI: 10.6084/m9.figshare.6094103.v1
title: Additional file 1: of Coordinated responses to individual tumor antigens by IgG antibody and CD8+ T cells following cancer vaccination

description: Table S1. 4T1 Exome Overlap. Comparison of independent 4T1 whole exome sequencing analysis and prior literature. Table S2. Preliminary IgG Peptide Array. Table S3. IgG Peptide Array and ELISAs. Table S4. TMT Mass Spectrometry. (XLSX 2550 kb)
DOI: 10.6084/m9.figshare.6094058
title: MOESM2 of The highly selective oxidation of cyclohexane to cyclohexanone and cyclohexanol over VAlPO4 berlinite by oxygen under atmospheric pressure

description: Additional file 2. The HPLC of reaction products.
DOI: 10.6084/m9.figshare.6094058.v1
title: MOESM2 of The highly selective oxidation of cyclohexane to cyclohexanone and cyclohexanol over VAlPO4 berlinite by oxygen under atmospheric pressure

description: Additional file 2. The HPLC of reaction products.
DOI: 10.6084/m9.figshare.12894386
title: Gene database of Thermotoga maritima MSB8

description: <i>Thermotoga maritima </i>is a thermophile able to survive at temperatures of 80 <sup>o</sup>C in water. This resource sought to provide foundational information about the genetic makeup of this organism through parsing its annotated genome sequence downloaded from Genbank. Comprising gene name, gene function, and gene sequence, the resource should find use in functional genomics workflow seeking to postulate hypothesis concerning the evolutionary processes that led to ability to survive under thermophilic conditions by this thermophile.
DOI: 10.6084/m9.figshare.6094016
title: Additional file 1: of Pseudoprogression manifesting as recurrent ascites with anti-PD-1 immunotherapy in urothelial bladder cancer

description: Supplementary Table 1: Ratio of ascites-to-stimulated PBMC control values for cytokine arrayanalytes. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6094016.v1
title: Additional file 1: of Pseudoprogression manifesting as recurrent ascites with anti-PD-1 immunotherapy in urothelial bladder cancer

description: Supplementary Table 1: Ratio of ascites-to-stimulated PBMC control values for cytokine arrayanalytes. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6091007
title: Texture Patch Dataset.zip

description: This study uses an in-house two-class dataset comprising 1000 texture images, 500 of which denote human skin texture and the rest represent non-skin textures with high degree of similarity to human skin. These skin texture images were taken by our research team using a DSLR camera to maintain the fine skin texture patterns. Images were captured from various ethnic groups and skin color tones to avoid biasness toward any ethnic groups or skin color. Since different human body parts have different skin texture characteristics, texture images in our dataset were collected from various body parts such as face, leg, core, arms with relatively equal amount of contribution in dataset. In order to better simulate the skin detection challenges in real world and improve the robustness and reliability of our experiments, skin texture images were collected in various scales, direction and lighting conditions. The remaining 500 texture images which denote non-skin textures with high degree of similarity to human skin were collected from various online image repositories. These images, represent the texture of wooden surfaces, sand and other objects such as rugs, animal furs and fabric which are highly similar to actual skin texture, color and hue. The dataset which prepared in this study simulates challenging real-world scenarios to evaluate and compare texture analysis techniques performance in challenging conditions. All texture patches were captured and stored in uncompressed Tagged Image File Format (TIFF) to avoid any alteration or compromise in actual texture patterns. Moreover, any kind of color alternation or image enhancement were avoided. All texture images were manually resized to 150x150 dimension to equalize the amount of contribution of each image in the model.
DOI: 10.6084/m9.figshare.6090842
title: Evaluating the effectiveness of PrepSTART for promoting oral language and emergent literacy skills in disadvantaged preparatory students

description: <i>Purpose</i>: This study examined the effectiveness of a classroom-based intervention programme aimed at improving the oral language and emergent literacy skills of students from low socio-economic, culturally diverse backgrounds within their first formal year of schooling (“prep”). <i>Method</i>: Data from 137 students were available for analysis. Participants were from three primary schools located in Queensland, Australia. Eight classes were allocated to intervention and two classes acted as a business as usual control. All students received literacy instruction as per the Australian Curriculum. However, the intervention group received 24 weeks of scripted, classroom-based, book-based intervention targeting code- and meaning-related emergent literacy skills. All students were assessed individually pre- and post-intervention on code-related measures (i.e. letter identification and phonological awareness) and meaning-related measures (i.e. vocabulary, oral narrative comprehension and retell). <i>Result</i>: All students made significant improvement over time for all measures. Students in the intervention group showed significantly more progress than the business as usual group on all measures, except for letter identification and oral narrative comprehension. <i>Conclusion</i>: This classroom-based book-based intervention can improve the code- and meaning-related emergent literacy skills of prep students from low socio-economic backgrounds and provide these students with the building blocks for successful literacy acquisition.
DOI: 10.6084/m9.figshare.6090842.v1
title: Evaluating the effectiveness of PrepSTART for promoting oral language and emergent literacy skills in disadvantaged preparatory students

description: <i>Purpose</i>: This study examined the effectiveness of a classroom-based intervention programme aimed at improving the oral language and emergent literacy skills of students from low socio-economic, culturally diverse backgrounds within their first formal year of schooling (“prep”). <i>Method</i>: Data from 137 students were available for analysis. Participants were from three primary schools located in Queensland, Australia. Eight classes were allocated to intervention and two classes acted as a business as usual control. All students received literacy instruction as per the Australian Curriculum. However, the intervention group received 24 weeks of scripted, classroom-based, book-based intervention targeting code- and meaning-related emergent literacy skills. All students were assessed individually pre- and post-intervention on code-related measures (i.e. letter identification and phonological awareness) and meaning-related measures (i.e. vocabulary, oral narrative comprehension and retell). <i>Result</i>: All students made significant improvement over time for all measures. Students in the intervention group showed significantly more progress than the business as usual group on all measures, except for letter identification and oral narrative comprehension. <i>Conclusion</i>: This classroom-based book-based intervention can improve the code- and meaning-related emergent literacy skills of prep students from low socio-economic backgrounds and provide these students with the building blocks for successful literacy acquisition.
DOI: 10.6084/m9.figshare.6090755
title: Parturient behaviour of a viviparous skink: evidence for maternal cannibalism when basking opportunity is low

description: We documented the behaviour of pregnant McCann’s skinks (<i>Oligosoma maccanni</i>) before, during and after parturition. Females were maintained in captivity from early pregnancy under thermal environments differing in basking opportunity (low, mid and high regimes). Thermal regime during pregnancy had little influence on maternal behaviours, including basking behaviour prior to birth and the duration of, and site selection for, labour. The majority of births (78%) occurred in the open and warm areas. Most females (61%; <i>n</i> = 102 births, <i>n </i>= 36 females) aided offspring post-birth by biting them free of the enclosing extra-embryonic membrane. Some females from the low regime consumed non-viable offspring, but whether this is a consistent difference among females held under different basking regimes requires further study. Many females (c. 79%) also exhibited a brief transient decrease in control of hind-limbs post-birth. Further studies on other squamates are recommended to shed light on the evolutionary history and possible conservation consequences of maternal behaviour during parturition.
DOI: 10.6084/m9.figshare.6090755.v1
title: Parturient behaviour of a viviparous skink: evidence for maternal cannibalism when basking opportunity is low

description: We documented the behaviour of pregnant McCann’s skinks (<i>Oligosoma maccanni</i>) before, during and after parturition. Females were maintained in captivity from early pregnancy under thermal environments differing in basking opportunity (low, mid and high regimes). Thermal regime during pregnancy had little influence on maternal behaviours, including basking behaviour prior to birth and the duration of, and site selection for, labour. The majority of births (78%) occurred in the open and warm areas. Most females (61%; <i>n</i> = 102 births, <i>n </i>= 36 females) aided offspring post-birth by biting them free of the enclosing extra-embryonic membrane. Some females from the low regime consumed non-viable offspring, but whether this is a consistent difference among females held under different basking regimes requires further study. Many females (c. 79%) also exhibited a brief transient decrease in control of hind-limbs post-birth. Further studies on other squamates are recommended to shed light on the evolutionary history and possible conservation consequences of maternal behaviour during parturition.
DOI: 10.6084/m9.figshare.6090749
title: Provenance of Jurassic sandstones in the Rakaia Terrane, Canterbury, New Zealand

description: Detrital zircon U–Pb and muscovite <sup>39</sup>Ar/<sup>40</sup>Ar ages from sandstones in the fluviatile to shallow marine mid-Jurassic Clent Hills Group and Wakaepa Formation of mid-Canterbury, South Island, New Zealand, show characteristic patterns that demonstrate a derivation from local Permian (and possibly Triassic) basement rocks of the Rakaia Terrane (Torlesse Composite Terrane). In the Clent Hills and Wakaepa age data sets, Permian to Triassic zircons form the major age groups, 34% and 58% respectively, but early Paleozoic (20% and 10%) and Precambrian (32% and 28%) zircons also form minor groups. The Precambrian zircons are mainly late Mesoproterozoic and late Neoproterozoic. The muscovite <sup>39</sup>Ar/<sup>40</sup>Ar age patterns reveal no Precambrian ages and the majority (48%) again fall in the Permian–Triassic age range. We postulate a local sediment source in the predominantly Permian Rakaia Terrane basement during Jurassic time, when the terrane was a deformed and stabilised upland block extending principally to the east. This was thus a convergent plate margin against which contemporary marine sedimentary basins developed and consolidated as the Kaweka Terrane (Torlesse Composite Terrane). The provenance of the Canterbury Jurassic cover rocks contrasts markedly with Jurassic-age cover rocks in the Brook Street Terrane. The latter show an almost unimodal pattern reflecting a volcaniclastic environment well-removed from continental sediment sources.
DOI: 10.6084/m9.figshare.6090749.v1
title: Provenance of Jurassic sandstones in the Rakaia Terrane, Canterbury, New Zealand

description: Detrital zircon U–Pb and muscovite <sup>39</sup>Ar/<sup>40</sup>Ar ages from sandstones in the fluviatile to shallow marine mid-Jurassic Clent Hills Group and Wakaepa Formation of mid-Canterbury, South Island, New Zealand, show characteristic patterns that demonstrate a derivation from local Permian (and possibly Triassic) basement rocks of the Rakaia Terrane (Torlesse Composite Terrane). In the Clent Hills and Wakaepa age data sets, Permian to Triassic zircons form the major age groups, 34% and 58% respectively, but early Paleozoic (20% and 10%) and Precambrian (32% and 28%) zircons also form minor groups. The Precambrian zircons are mainly late Mesoproterozoic and late Neoproterozoic. The muscovite <sup>39</sup>Ar/<sup>40</sup>Ar age patterns reveal no Precambrian ages and the majority (48%) again fall in the Permian–Triassic age range. We postulate a local sediment source in the predominantly Permian Rakaia Terrane basement during Jurassic time, when the terrane was a deformed and stabilised upland block extending principally to the east. This was thus a convergent plate margin against which contemporary marine sedimentary basins developed and consolidated as the Kaweka Terrane (Torlesse Composite Terrane). The provenance of the Canterbury Jurassic cover rocks contrasts markedly with Jurassic-age cover rocks in the Brook Street Terrane. The latter show an almost unimodal pattern reflecting a volcaniclastic environment well-removed from continental sediment sources.
DOI: 10.6084/m9.figshare.6089918
title: gene family datasets

description: gene families<br>
DOI: 10.6084/m9.figshare.6089918.v1
title: gene family datasets

description: gene families<br>
DOI: 10.6084/m9.figshare.6089915
title: Dataset for: Multivariate longitudinal data analysis with censored and intermittent missing responses

description: The multivariate linear mixed model (MLMM) has emerged as an important analytical tool for longitudinal data with multiple outcomes. However, the analysis of multivariate longitudinal data could be complicated by the presence of censored measurements due to a detection limit of the assay in combination with unavoidable missing values arising when subjects miss some of their scheduled visits intermittently. This paper presents a generalization of the MLMM approach, called the MLMM-CM, for a joint analysis of the multivariate longitudinal data with censored and intermittent missing responses. A computationally feasible EM-based procedure is developed to carry out maximum likelihood estimation within the MLMM-CM framework. Moreover, the asymptotic standard errors of fixed effects are explicitly obtained via the information-based method. We illustrate our methodology by using simulated data and a case study from an AIDS clinical trial. Experimental results reveal that the proposed method is able to provide more satisfactory performance as compared to the traditional MLMM approach.
DOI: 10.6084/m9.figshare.6089912
title: protein_sequences_50aa_Casola-Koralewski-2017.zip

description: protein sequences<br>
DOI: 10.6084/m9.figshare.6089912.v1
title: protein_sequences_50aa_Casola-Koralewski-2017.zip

description: protein sequences<br>
DOI: 10.17608/k6.auckland.6089879
title: Tula American Samoa Archaeological Ceramic Data

description: Descriptive archaeological sherd data to accompany Cochrane et al. 2013, "Plainware ceramics from Sāmoa..." Journal of Anthropological Archaeology, 32, 499-510.<br>Column Heads are self-explanatory except for:Sherd size:Is sherd greater than 1.5 cm in longest dimensionSherd type: 1= body, 2=rim, 3=necWeight: gramsThickness: in mmFire core: 1 oxidized, 2 reduced, 3 exteriors oxidized, 4 exterior reduced interior oxidized, 5 exterior oxidized interior reduced, 6 thick reduced core, 7 exterior thinly oxidized, 8 interior thinly oxidized, 9 thick oxidized coreAplastics: 1 dominant calcareous, 2 dominant terrigenous, 3 mixedAplastic Abundance:1: &lt; 1%, 2: 1%- 5%, 3: 5%-10%, 4: 10%-20%Aplastic Size:1:&lt; 0.25 mm, 2: 0.25 - 0.5 mm, 3: 0.5 -1.0 mm, 4: 1.0 -2.0 mm, 5: 2.0 - 4.0 mmRim Orientation: 1= inverted, 2=everted, 3=directRim symmetry: modes from Cochrane 2009Lip: modes from Cochrane 2009<br>COCHRANE, E. E. 2009. The Evolutionary Archaeology of Ceramic Diversity in Ancient Fiji, Oxford, Archaeopress.<br><br><br>
DOI: 10.17608/k6.auckland.6089879.v2
title: Tula American Samoa Archaeological Ceramic Data

description: Descriptive archaeological sherd data to accompany Cochrane et al. 2013, "Plainware ceramics from Sāmoa..." Journal of Anthropological Archaeology, 32, 499-510.<br>Column Heads are self-explanatory except for:Sherd size:Is sherd greater than 1.5 cm in longest dimensionSherd type: 1= body, 2=rim, 3=necWeight: gramsThickness: in mmFire core: 1 oxidized, 2 reduced, 3 exteriors oxidized, 4 exterior reduced interior oxidized, 5 exterior oxidized interior reduced, 6 thick reduced core, 7 exterior thinly oxidized, 8 interior thinly oxidized, 9 thick oxidized coreAplastics: 1 dominant calcareous, 2 dominant terrigenous, 3 mixedAplastic Abundance:1: &lt; 1%, 2: 1%- 5%, 3: 5%-10%, 4: 10%-20%Aplastic Size:1:&lt; 0.25 mm, 2: 0.25 - 0.5 mm, 3: 0.5 -1.0 mm, 4: 1.0 -2.0 mm, 5: 2.0 - 4.0 mmRim Orientation: 1= inverted, 2=everted, 3=directRim symmetry: modes from Cochrane 2009Lip: modes from Cochrane 2009<br>COCHRANE, E. E. 2009. The Evolutionary Archaeology of Ceramic Diversity in Ancient Fiji, Oxford, Archaeopress.<br><br><br>
DOI: 10.17608/k6.auckland.6089879.v1
title: Tula American Samoa Archaeological Ceramic Data

description: Descriptive archaeological sherd data to accompany Cochrane et al. 2013, "Plainware ceramics from Sāmoa..." Journal of Anthropological Archaeology, 32, 499-510.<br>Column Heads are self-explanatory except for:Sherd size:Is sherd greater than 1.5 cm in longest dimensionSherd type: 1= body, 2=rim, 3=necWeight: gramsThickness: in mmFire core: 1 oxidized, 2 reduced, 3 exteriors oxidized, 4 exterior reduced interior oxidized, 5 exterior oxidized interior reduced, 6 thick reduced core, 7 exterior thinly oxidized, 8 interior thinly oxidized, 9 thick oxidized coreAplastics: 1 dominant calcareous, 2 dominant terrigenous, 3 mixedAplastic Abundance:1: &lt; 1%, 2: 1%- 5%, 3: 5%-10%, 4: 10%-20%Aplastic Size:1:&lt; 0.25 mm, 2: 0.25 - 0.5 mm, 3: 0.5 -1.0 mm, 4: 1.0 -2.0 mm, 5: 2.0 - 4.0 mmRim Orientation: 1= inverted, 2=everted, 3=directRim symmetry: modes from Cochrane 2009Lip: modes from Cochrane 2009<br>COCHRANE, E. E. 2009. The Evolutionary Archaeology of Ceramic Diversity in Ancient Fiji, Oxford, Archaeopress.<br><br><br>
DOI: 10.6084/m9.figshare.6089867
title: The association between active tobacco use during pregnancy and growth outcomes of children under five years of age: a systematic review and meta-analysis

description: Data extraction summary tables
DOI: 10.6084/m9.figshare.6089690
title: O2@Altitude files

description: Respiratory responses to various altitudes
DOI: 10.6084/m9.figshare.6089690.v1
title: O2@Altitude files

description: Respiratory responses to various altitudes
DOI: 10.6084/m9.figshare.6089558
title: Large apparent growth increases in boreal forests are due to tree-ring sampling biases - Dataset

description: Large apparent growth increases in boreal forests are due to tree-ring sampling biases - Dataset<br><strong> </strong>
DOI: 10.6084/m9.figshare.6089558.v1
title: Large apparent growth increases in boreal forests are due to tree-ring sampling biases - Dataset

description: Large apparent growth increases in boreal forests are due to tree-ring sampling biases - Dataset<br><strong> </strong>
DOI: 10.6084/m9.figshare.6088058.v1
title: Testing Nowcast Monotonicity with Estimated Factors

description: This paper proposes a test to determine whether ‘big data’ nowcasting methods, which have become an important tool to many public and private institutions, are monotonically improving as new information becomes available. The test is the first to formalise existing evaluation procedures from the nowcasting literature. We place particular emphasis on models involving estimated factors, since factor-based methods are a leading case in the high-dimensional empirical nowcasting literature, although our test is still applicable to small-dimensional set-ups like bridge equations and MIDAS models. Our approach extends a recent methodology for testing many moment inequalities to the case of nowcast monotonicity testing, which allows the number of inequalities to grow with the sample size. We provide results showing the conditions under which both parameter estimation error and factor estimation error can be accommodated in this high dimensional setting when using the pseudo out-of-sample approach. The finite sample performance of our test is illustrated using a wide range of Monte Carlo simulations, and we conclude with an empirical application of nowcasting U.S. real gross domestic product (GDP) growth and five GDP sub-components. Our test results confirm monotonicity for all but one sub-component (government spending), suggesting that the factor-augmented model may be misspecified for this GDP constituent.