cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17909/t9-j6bz-5g89
title: Habitable Zones and M dwarf Activity across Time ("HAZMAT")

description: The HAbitable Zones and M dwarf Activity across Time (HAZMAT) program assesses the lifetime exposure of planets to stellar ultraviolet (UV) radiation using GALEX data, HST COS and STIS spectra, and semi-empirical, full-wavelength models. The program quantifies the evolution of far- and near-UV (FUV; NUV) emission for early- and mid-M (HAZMAT I), late-M (HAZMAT III), and K (HAZMAT V) type stars, as well as extreme-UV (EUV) emission from early-M stars (HAZMAT VI). The data products below are high-resolution synthetic spectra (EUV – IR; 100 Angstroms to 5.5 microns) of early-M stars at five distinct ages between 10 Myr and 5 Gyr. The spectra are computed with the PHOENIX atmosphere code from one-dimensional upper atmosphere models of 0.35 and 0.45 solar mass stars (stellar parameters given in Table 1 of the HAZMAT VI paper). The wavelengths (given in Angstroms) are in vacuum and the wavelength grid has a resolution of &lt;0.1 Angstroms. The flux densities (given in ergs/cm^2/s/Angstrom) are that at the stellar surface and are scalable to a distance D via (R_star/D)^2 where R_star is dependent on the age and mass of the star from Table 1. Downloadable data products include five spectra per 0.35 and 0.45 solar mass stars at ages of 10, 45, 120, 650, and 5000 Myr. The spectra reproduce either the minimum ("MIN"), lower quartile ("LQ"), median ("MED"), upper quartile ("UQ"), or maximum ("MAX") FUV and NUV flux density per age as calculated from the GALEX stellar sample in HAZMAT I. Also available for download are high-resolution full-wavelength (100 Angstrom – 950 micron) PHOENIX spectra of specific M dwarf planet host stars from Peacock et al. 2019a,b. The data products are synthetic spectra in wavelength (Angstrom) and flux density at the surface of the star (ergs/s/cm^2/ Angstrom). In the publications, the flux densities are scaled by (R_star/D)^2. The stars are TRAPPIST-1, GJ 176, GJ 436, and GJ 832.
DOI: 10.17632/f2nwcxjrjf.3
title: Rarities Vol 2 - Griffin Walker

description: Griffin Walker's demo, released in 2004. It's not mastered, please be kind.
DOI: 10.24377/ljmu.d.00000052
title: Surveying secretive forest species with camera trap Distance Sampling

description: 1. With animal species disappearing at unprecedented rates, we need an efficient monitoring method providing reliable estimates of population density and abundance, critical for the assessment of population status and trend. 2. We deployed 160 camera traps systematically over 743 locations covering 17,127 km2 of evergreen lowland rainforest of Salonga National Park, block South, Democratic Republic of the Congo. We evaluated the applicability of camera trap distance sampling (CTDS) to species different in size and behaviour. To improve precision of estimates, we evaluated two methods estimating species’ availability (“A”) for detection by camera traps. 3. We recorded 16,700 video clips, revealing 43 different animal taxa. We estimated densities of 14 species differing in physical, behavioural and ecological traits, and extracted species-specific availability from available video footage using two methods 1) “ACa” (Cappelle et al., 2019) and 2) “ARo” (Rowcliffe et al., 2014). With sample sizes being large enough, we found minor differences between ACa and ARo in estimated densities. In contrast, low detectability and reactivity to the camera were main sources of bias. CTDS proved efficient for estimating density of homogenously rather than patchily distributed species. 4. Synthesis and applications. Our application of camera trap distance sampling (CTDS) to a diverse vertebrate community demonstrates the enormous potential of this methodology for surveys of terrestrial wildlife, allowing rapid assessments of species’ status and trends that can translate into effective conservation strategies. By providing the first estimates of understudied species such as the Congo peafowl, the giant ground pangolin and the cusimanses, CTDS may be used as tool to revise these species’ conservation status in the IUCN Red List of Threatened Species. Based on the constraints we encountered, we identify improvements to the current application, enhancing the general applicability of this method.
description: Camera trap distance sampling in the block south of Salonga National Park, Democratic Republic of the Congo.
DOI: 10.7910/dvn/tdoapg/qvw4ld
title: URLs-v2.pdf

description: :unav
DOI: 10.5281/zenodo.3663386
title: LHCsimulationProject

description: The record contains LHC simulations as described in the Les Houches 2019 proceedings, "<strong>Model-Independent Signal Detection: A Challenge using Benchmark Monte Carlo Data and Machine Learning</strong>" (available on https://arxiv.org/pdf/2002.12220.pdf)
DOI: 10.5281/zenodo.3663387
title: LHCsimulationProject

description: The record contains LHC simulations as described in the Les Houches 2019 proceedings, "<strong>Model-Independent Signal Detection: A Challenge using Benchmark Monte Carlo Data and Machine Learning</strong>" (available on ***)
DOI: 10.5066/p9cvrd1x
title: Northeastern Illinois (NEIL) Six County Airborne Lidar Validation Survey Data

description: Airborne light detection and ranging (lidar) can provide high-quality topographic information over large areas. Lidar is an active remote sensing technology that employs laser ranging in near-infrared and green spectral wavelengths to provide three-dimensional (3D) point information for objects, including Earth's surface, vegetation, and infrastructure. The U.S. Geological Survey (USGS) National Geospatial Program (NGP) 3D Elevation Program (3DEP) seeks to systematically acquire airborne topographic lidar for the conterminous U.S. (conus), Hawaii, and the U.S. territories. A series of field accuracy assessment surveys, using conventional surveying methods (i.e. total station and Global Navigation Satellite System (GNSS)) along with ground based lidar (GBL), were conducted at test sites in Northeastern Illinois (NEIL) to evaluate the 3D absolute and relative accuracy of airborne lidar acquired for 3DEP.
DOI: 10.5281/zenodo.3666677
title: Catalhoyuk Houses 360 images

description: 360-degrees panoramas of Catalhoyuk archaeological site, near Konya, Turkey. The images present the Reconstructed houses and the Experimental House. The images are taken in the Houses interior spaces as well as outside. Part of these images has been used in the EMOTIVE project Çatalhöyük Digital education kit, a virtual collaborative experience.
DOI: 10.5281/zenodo.3666678
title: Catalhoyuk Houses 360 images

description: 360-degrees panoramas of Catalhoyuk archaeological site, near Konya, Turkey. The images present the Reconstructed houses and the Experimental House. The images are taken in the Houses interior spaces as well as outside. Part of these images has been used in the EMOTIVE project Çatalhöyük Digital education kit, a virtual collaborative experience.
DOI: 10.5281/zenodo.3666637
title: data sets for "Ultra-Conserved Elements and morphology reciprocally illuminate conflicting phylogenetic hypotheses in Chalcididae (Hymenoptera, Chalcidoidea)"

description: data sets used in : Cruaud A, Delvare G, Nidelet S, Sauné L, Ratnasingham S, Chartois M, Blaimer BB, Gates M, Brady SG, Faure S, van Noort S, Rossi J-P, and Rasplus J-Y. in press. Ultra-Conserved Elements and morphology reciprocally illuminate conflicting phylogenetic hypotheses in Chalcididae (Hymenoptera, Chalcidoidea). Cladistics. 1) morphological matrix (matrix_morphology_chalcididae_cladistics2020.nex) : Further details on characters and character states as well as illustrations can be found in the manuscript. 2) concatenated UCE data set (merge_UCEs_chalcididae_cladistics2020.phy) 3) all phylogenetic trees (morphology, UCEs, subset of UCEs; see paper for further details) 4) a mesquite file with mapping of morphological characters on alternative UCE trees and the MJ consensus tree of the morphological analysis (mesquite_trees_and_morphological_transformations_chalcididae_cladistics2020.nex)
DOI: 10.5281/zenodo.3666638
title: data sets for "Ultra-Conserved Elements and morphology reciprocally illuminate conflicting phylogenetic hypotheses in Chalcididae (Hymenoptera, Chalcidoidea)"

description: data sets used in : Cruaud A, Delvare G, Nidelet S, Sauné L, Ratnasingham S, Chartois M, Blaimer BB, Gates M, Brady SG, Faure S, van Noort S, Rossi J-P, and Rasplus J-Y. in press. Ultra-Conserved Elements and morphology reciprocally illuminate conflicting phylogenetic hypotheses in Chalcididae (Hymenoptera, Chalcidoidea). Cladistics. 1) morphological matrix (matrix_morphology_chalcididae_cladistics2020.nex) : Further details on characters and character states as well as illustrations can be found in the manuscript. 2) concatenated UCE data set (merge_UCEs_chalcididae_cladistics2020.phy) 3) all phylogenetic trees (morphology, UCEs, subset of UCEs; see paper for further details) 4) a mesquite file with mapping of morphological characters on alternative UCE trees and the MJ consensus tree of the morphological analysis (mesquite_trees_and_morphological_transformations_chalcididae_cladistics2020.nex)
DOI: 10.18739/a27s7hs5v
title: Weather station data from McCall Glacier, Arctic Alaska, 2003-2014

description: These data are a compilation of all weather station data acquired on McCall Glacier, Alaska, from 2003-2015, including about 35 dataloggers from 25 locations on or near the glacier. The data from each station were compiled and reduced into a single spreadsheet, where missing time-steps or cells were filled with no data values as indicated in the spreadsheet header and associated metadata. Some out of range values were eliminated, as indicated in the metadata for each station as well as in the Methods section, but all these data should be consider research-grade field data and users are cautioned to take care when using any of these data, as not all instrument failures or malfunctions were captured and mistakes in data reduction may yet persist; for example, that there are no counts in a tipping bucket does not mean it was not raining, it could well be the instrument had failed during this time. Along with the spreadsheets are all of the raw data downloads, field notes, wiring diagrams, and photos that could be found relating to each station; these additional metadata should allow a savvy user to perform their own quality assurance on the data. As of 2019, a number of these stations were still operational, but these data will be archived separately.
DOI: 10.21227/4692-2z85
title: H2Arm - BSP vs PID experiments

description: TBD
DOI: 10.21227/15tg-sm52
title: H2Arm - BSP vs PID experiments

description: TBD
DOI: 10.15468/gc2baf
title: Diseases of Cymbopogon citratus (Poaceae) in China: Curvularia nanningensis sp. nov.

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zhang, Qian, Yang, Zai-Fu, Cheng, Wei, Wijayawardene, Nalin N., Hyde 4, Kevin D., Chen, Zhuo, Wang, Yong (2020): Diseases of Cymbopogon citratus (Poaceae) in China: Curvularia nanningensis sp. nov. MycoKeys 63: 49-67, DOI: http://dx.doi.org/10.3897/mycokeys.63.49264, URL: http://dx.doi.org/10.3897/mycokeys.63.49264
DOI: 10.15468/xum3g7
title: A new Orthosia Ochsenheimer, 1816 species from Iran (Lepidoptera, Noctuidae, Hadeninae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wiesmair, Benjamin, Shirvani, Asghar, Ronkay, Laszlo (2020): A new Orthosia Ochsenheimer, 1816 species from Iran (Lepidoptera, Noctuidae, Hadeninae). Nota Lepidopterologica 43: 15-28, DOI: http://dx.doi.org/10.3897/nl.43.38538, URL: http://dx.doi.org/10.3897/nl.43.38538
DOI: 10.21227/mbs9-bb84
title: H2Arm - BSP vs PID experiments

description: TBD
DOI: 10.15468/zq1ltw
title: Four new species of the primitively segmented spider genus Qiongthela from Hainan Island, China (Mesothelae, Liphistiidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yu, Li, Liu, Fengxiang, Zhang, Zengtao, Wang, Yan, Li, Daiqin, Xu, Xin (2020): Four new species of the primitively segmented spider genus Qiongthela from Hainan Island, China (Mesothelae, Liphistiidae). ZooKeys 911: 51-66, DOI: http://dx.doi.org/10.3897/zookeys.911.48703, URL: http://dx.doi.org/10.3897/zookeys.911.48703
DOI: 10.15468/ovtcu2
title: Asianopis gen. nov., a new genus of the spider family Deinopidae from Asia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lin, Yejie, Shao, Lili, Haenggi, Ambros, Caleb, John T. D., Koh, Joseph K. H., Jaeger, Peter, Li, Shuqiang (2020): Asianopis gen. nov., a new genus of the spider family Deinopidae from Asia. ZooKeys 911: 67-99, DOI: http://dx.doi.org/10.3897/zookeys.911.38761, URL: http://dx.doi.org/10.3897/zookeys.911.38761
DOI: 10.15468/yzdzwx
title: A new species of Astreptolabis in mid-Cretaceous amber from northern Myanmar, with the discovery of the first male of Astreptolabidinae (Dermaptera)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mao, Yue, Engel, Michael S., Ren, Dong, Gao, Taiping (2020): A new species of Astreptolabis in mid-Cretaceous amber from northern Myanmar, with the discovery of the first male of Astreptolabidinae (Dermaptera). ZooKeys 911: 101-112, DOI: http://dx.doi.org/10.3897/zookeys.911.38845, URL: http://dx.doi.org/10.3897/zookeys.911.38845
DOI: 10.15468/yd6hv7
title: Phyllodiaptomus (Phyllodiaptomus) roietensis, a new diaptomid copepod (Copepoda, Calanoida) from temporary waters in Thailand and Cambodia, with a key to the species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sanoamuang, La-orsri, Watiroyram, Santi (2020): Phyllodiaptomus (Phyllodiaptomus) roietensis, a new diaptomid copepod (Copepoda, Calanoida) from temporary waters in Thailand and Cambodia, with a key to the species. ZooKeys 911: 1-20, DOI: http://dx.doi.org/10.3897/zookeys.911.38496, URL: http://dx.doi.org/10.3897/zookeys.911.38496
DOI: 10.15468/pbp5ac
title: New distribution records of subterranean crustaceans from cenotes in Yucatan (Mexico)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Angyal, Dorottya, Chavez-Solis, Efrain M., Lievano-Beltran, Luis A., Magana, Benjamin, Simoes, Nuno, Mascaro, Maite (2020): New distribution records of subterranean crustaceans from cenotes in Yucatan (Mexico). ZooKeys 911: 21-49, DOI: http://dx.doi.org/10.3897/zookeys.911.47694, URL: http://dx.doi.org/10.3897/zookeys.911.47694
DOI: 10.25625/td3jw9/sobnig
title: DA05.2.1-1_Reflexionsbericht_HiGHmed_Lehre.pdf

description: :unav
DOI: 10.25625/td3jw9
title: Erfahrungs- und Reflexionsbericht zur Einarbeitung des Teams 2018 (DA 05.2.1-1)

description: Erfahrungs- und Reflexionsbericht zur Einarbeitung des Teams 2018
DOI: 10.5066/p94lmopp
title: Potential groundwater recharge estimates based on a groundwater rise analysis technique for two agricultural sites in southeastern Minnesota, 2016-2018

description: A water table fluctuation model simulated potential recharge rates from 2016 to 2018 for two agricultural sites in southeastern Minnesota. The model calculated potential recharge rates through the analysis of groundwater rises. A total of 42 piezometers were analyzed for this study using the water table fluctuation model. This methodology of calculating potential recharge rates was used as an independent method from two other methods: a soil-water-balance model (https://doi.org/10.5066/P90N4AWG), and DRAINMOD (https://doi.org/10.5066/P987N30U).
DOI: 10.14469/hpc/6775
title: 1,2,2,3-tetrakis(2,4,6-triisopropylphenyl)-2H-trisilirene, C2, G = -3210.135309, compound 1.

description: Gaussian Calculation
DOI: 10.5066/p90n4awg
title: Soil-Water Balance model datasets used to estimate recharge for southeastern Minnesota, 2014-2018

description: A previous soil-water balance (SWB) model [Smith and Westenbroek, 2015; http://dx.doi.org/10.3133/sir20155038) for Minnesota was updated to simulate potential recharge rates from 2014 to 2018. The previous model was developed to estimate mean annual potential recharge from 1995 to 2010. The updated model was also run with a newer version of the SWB model, also known as SWB version 2.0 {Westenbroek and others, 2018; https://doi.org/10.3133/tm6A59). The updated model was used to extract potential recharge rates for comparison to recharge rates calculated for two agricultural field sites in southeastern Minnesota, as part of the associated report, U.S. Geological Survey Scientific Investigations Report 2020-5006 (http://dx.doi.org/10.3133/sir20205006). The potential recharge rates were also used to simulate potential recharge rates for all of southeastern Minnesota from 2014-2018. For this model, the land-use grid was updated to the 2011 National Land Cover Database (NLCD); otherwise, the other input datasets and the lookup table were left unaltered from the original model. Daymet (version 3) daily surface weather data necessary for running this SWB model, including "prcp", "tmax", and "tmin", can be downloaded from this SWB model archive. Alternatively, the Daymet v3 are available upon request through the following link: https://doi.org/10.3334/ORNLDAAC/1328.
DOI: 10.5066/p987n30u
title: DRAINMOD simulations for two agricultural drainage sites in western Fillmore County, southeastern Minnesota

description: DRAINMOD, a field-scale, process-based, distributed model (Skaggs, 1980; https://www.bae.ncsu.edu/agricultural-water-management/DRAINMOD/), was used to simulate subsurface drainage flow and field water-surface elevations. DRAINMOD simulations are often used to optimize drainage patterns for agricultural fields with subsurface drainage. For this study, the model results were also used to simulate deep seepage rates. Deep seepage is the amount of water that moves past the agricultural drains. These deep seepage rates were then used as a surrogate for potential groundwater recharge rates. A total of nine different scenarios were run, each sceanrio corresponding to a different location on one of three different field sites (two drained sites, one undrained site). All of the different scenarios and model results are discussed in the associated Scientific Investigations Report, https://doi.org/10.5033/sir20205006.
DOI: 10.18430/m36nyu
title: X-ray diffraction data for the the X-ray crystal structure of Staphylococcus aureus Fatty Acid Kinase (Fak) B1 F263T mutant protein to 2.18 Angstrom resolution (6NYU)
DOI: 10.5281/zenodo.3661414
title: Snow depth fractal behavior at the Izas experimental catchment from 2011 to 2017

description: All the files included here contain the data produced for the manuscript "Inter-annual and seasonal variability of snow depth scaling behavior in a sub-alpine catchment", submitted for possible publication in Water Resources Research. The raw data used to generate the figures for the manuscript can be found below: Revuelto, J., Azorin-Molina, C., Alonso-González, E., Sanmiguel- Vallelado, A., Navarro-Serrano, F., Rico, I., and López- Moreno, J. I.: Observations of snowpack distribution and meteorological variables at the Izas Experimental Catchment (Spanish Pyrenees) from 2011 to 2017 [Data set], Zenodo, https://doi.org/10.5281/zenodo.848277, 2017. The following data files and scripts were used to produce results for the Izas experimental catchment: Variogram_YYYYMMDD_SD_ext.rsav: Omnidirectional variogram for snow depth map obtained from Lidar scan acquired on YYYY-MM-DD. Variogram_YYYYMMDD_SD_directional_ext.rsav: Directional variogram for snow depth map obtained from Lidar scan acquired on YYYY-MM-DD. Variogram_DEM_Izas1m_ext.rsav: Omnidirectional variogram for bare earth topography. Variogram_DEM_Izas1m_directional_ext.rsav: Directional variogram for bare earth topography (needs to be loaded in R, as any other .rsav file). VarAnalysis_Omnidirectional_Izas.R: Script used to analyze omnidirectional variograms and plot results. VarAnalysis_Directional_Izas.R: Script used to analyze directional variograms and plot results. Variogram_Omnidirectional_Izas.R: Script used to generate directional variograms and save data. Variogram_Directional_Izas.R: Script used to generate directional variograms and save data.
DOI: 10.5281/zenodo.3666697
title: Cross Lingual Word Embeddings for Turkic Languages

description: Pre-trained word embeddings for five Turkic languages using skip-gram model of FastText trained on large corpora of Turkic languages. Turkish, Uzbek, Azeri, Kazakh and Kyrgyz languages are covered. For full info, please check this repo of GitHub: https://github.com/elmurod1202/crosLingWordEmbTurk
DOI: 10.5281/zenodo.3666696
title: Cross Lingual Word Embeddings for Turkic Languages

description: Pre-trained word embeddings for five Turkic languages using skip-gram model of FastText trained on large corpora of Turkic languages. Turkish, Uzbek, Azeri, Kazakh and Kyrgyz languages are covered. For full info, please check this repo of GitHub: https://github.com/elmurod1202/crosLingWordEmbTurk
DOI: 10.6073/pasta/e33560d9a06d63f8ec89fa0b8487764b
title: SBC LTER: Reef: Annual time series of biomass for kelp forest species, ongoing since 2000

description: These data are annual estimates of biomass of approximately 225 taxa of reef algae, invertebrates and fish in permanent transects at 11 kelp forest sites in the Santa Barbara Channel (2-8 transects per site). Abundance is measured annually (as percent cover or density, by size) and converted to biomass (i.e., wet mass, dry mass, decalcified dry mass, ash free dry mass) using published taxon-specific algorithms. Data collection began in summer 2000 and continues annually in summer to provide information on community structure, population dynamics and species change. The time period of data collection varied among the 11 kelp forest sites. Sampling at BULL, CARP, and NAPL began in 2000, sampling at the other 6 mainland sites (AHND, AQUE, IVEE, GOLB, ABUR, MOHK) began in 2001 (transects 3, 5, 6, 7, 8 at IVEE were added in 2011). Data collection at the two Santa Cruz Island sites (SCTW and SCDI) began in 2004. See Methods for more information. See Methods for more information.
DOI: 10.6073/pasta/0a398e9bd15bdcdda4384ce1f29efdbb
title: SBC LTER: Reef: Kelp Forest Community Dynamics: Fish abundance

description: These data describe the abundance and size of fish species as part of SBCLTER's kelp forest monitoring program to track long-term patterns in species abundance and diversity. This study began in 2000 in the Santa Barbara Channel, California, USA. The abundance and size of all taxa of resident kelp forest fish encountered along permanent transects are recorded at nine reef sites located along the mainland coast of the Santa Barbara Channel and at two sites on the north side of Santa Cruz Island. These sites reflect several oceanographic regimes in the channel and vary in distance from sources of terrestrial runoff. In these surveys, fish were counted in either a 40x2m benthic quadrat, or in the water parcel 0-2m off the bottom over the same area. The two tables in this data package include: 1) The annual benthic fish community survey which was conducted on 11 reefs once a year around late July or early August; and 2) The monthly fish survey which was conducted once a month at a subset of the sites (3 of the annual sites) The time period of data collection for the annual benthic fish community survey varied among the 11 kelp forest sites. Sampling at BULL, CARP, and NAPL began in 2000, sampling at the other 6 mainland sites (AHND, AQUE, IVEE, GOLB, ABUR, MOHK) began in 2001 (transects 3, 5, 6, 7, 8 at IVEE were added in 2011). Data collection at the two Santa Cruz Island sites (SCTW and SCDI) began in 2004. The monthly fish survey at ABUR (Transect 1, 2, and 3), AQUE (Transect1), and MOHK (Transect 1) in 2002. The Transect 2 and 3 at ABUR were discontinued in June 2006. See Methods for more information.