cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1174756.10fu
title: SH1174756.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1174761.10fu
title: SH1174761.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1174782.10fu
title: SH1174782.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1174784.10fu
title: SH1174784.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1174802.10fu
title: SH1174802.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1174814.10fu
title: SH1174814.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1174820.10fu
title: SH1174820.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1174831.10fu
title: SH1174831.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.duq48t
title: Occurrence Download

description: A dataset containing 222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Las tortugas marinas y sus playas de anidación en México",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 222 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049700-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112028973
title: Cuneiform Tablet 1913.14.1514, Spurlock 1913.14.1514

description: [Text Description:] Administrative tablet ❧ [Text or Publication Number Note:] Spurlock 1913.14.1514; CDLI P421366 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/1) Medium Gray (N 5.25/ 22.1% R) ❧ [Physical Object Note:] 7.5 x 4.7 x 2.8 cm (93 g)
DOI: 10.15468/dl.22wpks
title: Occurrence Download

description: A dataset containing 981954 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Rhodotypos scandens (Thunb.) Makino, Rhodomyrtus tomentosa (Aiton) Hassk., Rhododendron simsii Planch., Rhododendron ponticum L., Rhododendron maximum L., Rhizophora mangle L., Rhinanthus minor L., Rhigozum trichotomum Burch., Rhaponticum repens (L.) Hidalgo, Rhamnus L., Reynoutria japonica Houtt.)"
 ]
}

 The dataset includes 981954 records from 2409 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0195682-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ef4mcb
title: Occurrence Download

description: A dataset containing 8377 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cyperus difformis L.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 8377 records from 349 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013720-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5067/modis/mod18a2.006
title: MODIS/Terra+Aqua Photosynthetically Active Radiation Daily/3-Hour L3 Global 5km SIN Grid V006
DOI: 10.25403/upresearchdata.25908838
title: Cell permeability and tight junction analysis using multiple imaging and molecular techniques

description: The dataset contains all the raw quantitative data and microscopy images generated for a research project aiming to develop and validate a contact coculture model of the blood brain barrier using bEnd.3 and C8-D1A cell lines. Growth curves were generated using and transforming the raw data generated from the crystal violet assay for the bEnd.3 and C8-D1A cell lines using a range of seeding densities. In addition, phase-contrast micrographs were taken at 24 hour intervals throughout the 96 hour culture period to confirm the growth and confluence of the cell cultures. This was used to assess the growth kinetics of the different seeding densities for both cell lines to ensure the cells were viable throughout the cell culture period and to select optimal seeding densities for further experimentation.
Thereafter, a paracellular permeability assay was conducted using bEnd.3 cells, over a range of seeding densities, cultured for 48, 72, and 96 hours. The bEnd.3 cells were then treated with 5 mM ethylene glycol-bis(β-aminoethyl ether)-tetraacetic acid (EGTA) for 3 and 24 hours in order to validate the formation of functional endothelial barriers. This generated raw data regarding the permeability of the bEnd.3 cell line and used to obtain permeability values. Similarly, paracellular permeability data was generated for the bEnd.3/C8-D1A contact coculture model using the paracellular permeability assay. Raw data on the permeability of the bEnd.3/C8-D1A contact coculture was generated and used to obtain apparent permeability values.
<br>
The 10 000 cells/well seeding density for bEnd.3 cells was used to assess the dynamics of tight junction protein (i.e. claudin-5, occludin, and zona occludens 1) localisation over time using confocal microscopy. Further confocal micrographs were taken at 96 hours of the 10 000 cells/well bEnd.3 cells: a. untreated; b. treated with 5 mM EGTA for 3 hours and; c. following 30 minutes of calcium restoration. The C8-D1A cells were subjected to reverse transcriptase polymerase chain reaction to validate the expression of aquaporin 4 (AQP4), glutamate aspartate transporter (GLAST), glutamate transporter 1 (GLT-1), glial fibrillary acidic protein (GFAP). Genomic DNA, no transcript controls, and a housekeeping gene was included to confirm the results of the assay.
DOI: 10.25403/upresearchdata.25908838.v1
title: Cell permeability and tight junction analysis using multiple imaging and molecular techniques

description: The dataset contains all the raw quantitative data and microscopy images generated for a research project aiming to develop and validate a contact coculture model of the blood brain barrier using bEnd.3 and C8-D1A cell lines. Growth curves were generated using and transforming the raw data generated from the crystal violet assay for the bEnd.3 and C8-D1A cell lines using a range of seeding densities. In addition, phase-contrast micrographs were taken at 24 hour intervals throughout the 96 hour culture period to confirm the growth and confluence of the cell cultures. This was used to assess the growth kinetics of the different seeding densities for both cell lines to ensure the cells were viable throughout the cell culture period and to select optimal seeding densities for further experimentation.
Thereafter, a paracellular permeability assay was conducted using bEnd.3 cells, over a range of seeding densities, cultured for 48, 72, and 96 hours. The bEnd.3 cells were then treated with 5 mM ethylene glycol-bis(β-aminoethyl ether)-tetraacetic acid (EGTA) for 3 and 24 hours in order to validate the formation of functional endothelial barriers. This generated raw data regarding the permeability of the bEnd.3 cell line and used to obtain permeability values. Similarly, paracellular permeability data was generated for the bEnd.3/C8-D1A contact coculture model using the paracellular permeability assay. Raw data on the permeability of the bEnd.3/C8-D1A contact coculture was generated and used to obtain apparent permeability values.
<br>
The 10 000 cells/well seeding density for bEnd.3 cells was used to assess the dynamics of tight junction protein (i.e. claudin-5, occludin, and zona occludens 1) localisation over time using confocal microscopy. Further confocal micrographs were taken at 96 hours of the 10 000 cells/well bEnd.3 cells: a. untreated; b. treated with 5 mM EGTA for 3 hours and; c. following 30 minutes of calcium restoration. The C8-D1A cells were subjected to reverse transcriptase polymerase chain reaction to validate the expression of aquaporin 4 (AQP4), glutamate aspartate transporter (GLAST), glutamate transporter 1 (GLT-1), glial fibrillary acidic protein (GFAP). Genomic DNA, no transcript controls, and a housekeeping gene was included to confirm the results of the assay.
DOI: 10.5284/1119144
title: Site Data from an Archaeological Watching Brief at Church of St Mary, Long Wittenham, Oxfordshire, February 2022

description: This digital archive comprises images, CAD, text, spreadsheet and site record data from an archaeological watching brief at St Mary's Church, Long Wittenham, Oxfordshire (NGR SU 54855 94044). The work was undertaken by John Moore Heritage Services on 21st February 2022. The watching brief investigated two areas beneath the pew platforms at the east end of the nave, and uncovered pew foundation walls of probable medieval date; a post-medieval brick barrel vault; and layers relating to the post-medieval period.
DOI: 10.15468/dl.eu28ru
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-15.92122 27.5702,-15.05363 27.5702,-15.05363 28.364,-15.92122 28.364,-15.92122 27.5702))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Milvus milvus (Linnaeus, 1758)"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070960-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fkzutm
title: Occurrence Download

description: A dataset containing 20598 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Xanthium spinosum L.)"
 ]
}

 The dataset includes 20598 records from 492 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070961-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8672086
title: Autism-normalized
DOI: 10.25625/bpqafk/3q2apt
title: Fig2e_data.h5

description: The HDF5 file consists of two data sets: /bg_9900eV, /bg_13800eV. Each of them represents a mean hologram of the cell-free, liquid-filled capillary for the respective beam energies. The attributes of each dataset are: median_brightness, y_range(px) and z_range(px)

Origin of the data: Holograms of the cell-free capillaries that were further processed (cropping, normalization, alignment) and averaged.

How to use: HDF5 files can be accessed with multiple tools and softwares, e.g., silx (https://www.silx.org/doc/silx/latest/applications/view.html) and the python module h5py (https://docs.h5py.org/en/stable/quick.html)
DOI: 10.25625/bpqafk/bv88lj
title: Fig2b_data.txt

description: The file contains a table that lists for every column in the corresponding background-divided transmission image the average value and its error from the experimental data as well as the calculated/ expected value according to Lambert-Beer's law. 

Origin of the data: Processed acquisitions from single photon counting detector images that are acquired during waveguide alignment.

How to use: Read and plot the data with your preferred tool.
DOI: 10.25625/bpqafk/najz6v
title: Fig3c_data.h5

description: The HDF5 file consists of twelve datasets: /0.3s, /0.6s, /0.9s, /3.0s, /6.0s, /9.0s, /15.0s, /30.0s, /60.0s, /90.0s, /150.0s, /300.0s). Each of them represents an exposure time and consists of a list of pixel values that are reconstructed phase shifts from the the cytoplasm of the cell. Contributions from debris and BaSO4 grains are excluded. Attributes for every dataset are: time(s), min, quantile25, median, median_err, mean, mean_err, quantile75, max

Origin of the data: Masked RAAR phase reconstructions based on processed holograms of a cell (without signal of capillary or liquid). The cell has been fixed, stained and measured with 9.9keV.

How to use: HDF5 files can be accessed with multiple tools and softwares, e.g., silx (https://www.silx.org/doc/silx/latest/applications/view.html) and h5py (https://docs.h5py.org/en/stable/quick.html)
DOI: 10.15468/dl.7tnzch
title: Occurrence Download

description: A dataset containing 5265660 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Florabank1 - A grid-based database on vascular plant distribution in the northern part of Belgium (Flanders and the Brussels Capital region)"
 ]
}

 The dataset includes 5265660 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070924-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25625/bpqafk/gbqeun
title: Fig3d_data.h5

description: The HDF5 file consists of nine datasets: /time_30.0s/cytoplasmic_phase_shift_1, /time_30.0s/cytoplasmic_phase_shift_2, /time_30.0s/cytoplasmic_phase_shift_3, /time_30.0s/cytoplasmic_phase_shift_4, /time_30.0s/cytoplasmic_phase_shift_5, /time_30.0s/cytoplasmic_phase_shift_6, /time_30.0s/cytoplasmic_phase_shift_7, /time_30.0s/cytoplasmic_phase_shift_8, /time_30.0s/cytoplasmic_phase_shift_9). Each of them represents a magnitude of Gaussian noise (sigma) that is added to the the hologram with an exposure time of 30s before reconstruction. The datasets contain reconstructed phase shifts (pixel values) from the the cytoplasm of the cell. Contributions from debris and BaSO4 grains are not included. Attributes for every dataset are: exposure_time(s), median, noise_sigma, quantile25, quantile75

Origin of the data: Masked RAAR phase reconstructions based on processed holograms of a cell (without signal of capillary or liquid). The cell has been fixed, stained and measured with 9.9keV.

How to use: HDF5 files can be accessed with multiple tools and softwares, e.g., silx (https://www.silx.org/doc/silx/latest/applications/view.html) and h5py (https://docs.h5py.org/en/stable/quick.html)
DOI: 10.25625/bpqafk/fpjpdq
title: Fig3e_data.zip

description: Files for different acquisition datasets that are obtained for different experimental conditions: "fixed and stained" and "living" cells for both photon energies. Every file contain a table which link the exposure time to the experimentally observed noise level (sigma) in the cell holograms. 

Origin of the data: Processed holograms of the background-corrected cell.

How to use: Read and plot the data with your preferred tool.
DOI: 10.25625/bpqafk/qbu0te
title: Fig3f_data.h5

description: The HDF5 file consists of four datasets: /30s/data_fixed_and_stained_9900eV, /30s/data_fixed_and_stained_13800eV, /30s/data_living_9900eV, /30s/data_living_13800eV. Every dataset describes an experimental condition. It is a list of reconstructed phase shift pixel values that is accumulated from individual acquisition datasets. The mean and median values (means, medians) of those contributing individual datasets are listed as attributes. Moreover, the global_mean and global_median are stored as attributes for each dataset.

Origin of the data: Masked RAAR phase reconstructions based on processed holograms of cells.

How to use: HDF5 files can be accessed with multiple tools and softwares, e.g., silx (https://www.silx.org/doc/silx/latest/applications/view.html) and h5py (https://docs.h5py.org/en/stable/quick.html)