cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/ww5w28s9sy
title: Airway B Cell Repertoire Fragmentation and Microbe-Driven Clonal Expansion in COPD-HIV comorbidity

description: This dataset contains immune repertoire and microbiome sequencing data from induced sputum samples collected from 160 Ugandan adults stratified by HIV and COPD status (HIV−/COPD−, HIV+/COPD−, HIV−/COPD+, HIV+/COPD+). A total of 5,726 B cell receptor (BCR) clonotypes were reconstructed using the TRUST4 algorithm from bulk RNA-seq data. Complementary 16S rRNA sequencing was performed to profile airway microbial communities.

The dataset includes:
Clonotype sequences (AIRR-formatted outputs).
Repertoire features (diversity indices, CDR3 length, somatic hypermutation rates, V–J recombination usage).
Sample-level metadata (HIV and COPD status, demographic variables).
Genus-level microbiome abundance tables.
Clonotype-microbe correlation matrices.
BCR_Clonotyping_Analysis_FullPackage: a complete analysis workflow (Python code and Jupyter notebooks) for reproducing clonotype construction, repertoire statistics, network analyses, and repertoire–microbiome integration.

Value of the Data:
Provides the first airway BCR repertoire map in HIV, COPD, and their comorbidity.
Enables analysis of repertoire diversity, V–J recombination biases, clonotype sharing, and network topology.
Links immune repertoire data with microbiome profiles to investigate repertoire–microbiome associations.
Includes BCR_Clonotyping_Analysis_FullPackage to allow reproducibility, benchmarking, and adaptation by other groups.
Supports research on mucosal immunology, host-microbiome interactions, biomarker discovery, and microbiome-specific inflammotypes.

Data Format:
CSV files: clonotype tables, repertoire metrics, metadata, microbiome abundance.
FASTA/CSV (AIRR format): reconstructed BCR sequences.
TXT/TSV: processed 16S rRNA abundance tables.
Excel/CSV: supplementary tables for clonotype–microbe correlations.
Code: BCR_Clonotyping_Analysis_FullPackage (Python scripts and Jupyter notebooks for full pipeline).

Ethics Statement:
All participants provided written informed consent. The study was approved by the Mulago Hospital Research and Ethics Committee (MHREC; reference no. 2152) and the Uganda National Council for Science and Technology (UNCST) (reference no. HS2035ES) .

Funding:
This work was supported by the Fogarty International Center, National Institutes of Health (R21TW012354, 3R21TW012354-S1, 3R21TW012354-S2).

Keywords:
BCR repertoire, airway microbiome, HIV, COPD, clonotypes, immunoglobulin, induced sputum, repertoire–microbiome interaction, Uganda, BCR_Clonotyping_Analysis_FullPackage
DOI: 10.15468/dl.r4bqty
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea thorelii Pierre ex Laness."
 ]
}

 The dataset includes 115 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017404-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.86ef4z
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea sumatrana (Slooten) Desch"
 ]
}

 The dataset includes 140 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017400-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4k38s
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea superba Symington"
 ]
}

 The dataset includes 84 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017401-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ww5w28s9sy.1
title: Airway B Cell Repertoire Fragmentation and Microbe-Driven Clonal Expansion in COPD-HIV comorbidity

description: This dataset contains immune repertoire and microbiome sequencing data from induced sputum samples collected from 160 Ugandan adults stratified by HIV and COPD status (HIV−/COPD−, HIV+/COPD−, HIV−/COPD+, HIV+/COPD+). A total of 5,726 B cell receptor (BCR) clonotypes were reconstructed using the TRUST4 algorithm from bulk RNA-seq data. Complementary 16S rRNA sequencing was performed to profile airway microbial communities.

The dataset includes:
Clonotype sequences (AIRR-formatted outputs).
Repertoire features (diversity indices, CDR3 length, somatic hypermutation rates, V–J recombination usage).
Sample-level metadata (HIV and COPD status, demographic variables).
Genus-level microbiome abundance tables.
Clonotype-microbe correlation matrices.
BCR_Clonotyping_Analysis_FullPackage: a complete analysis workflow (Python code and Jupyter notebooks) for reproducing clonotype construction, repertoire statistics, network analyses, and repertoire–microbiome integration.

Value of the Data:
Provides the first airway BCR repertoire map in HIV, COPD, and their comorbidity.
Enables analysis of repertoire diversity, V–J recombination biases, clonotype sharing, and network topology.
Links immune repertoire data with microbiome profiles to investigate repertoire–microbiome associations.
Includes BCR_Clonotyping_Analysis_FullPackage to allow reproducibility, benchmarking, and adaptation by other groups.
Supports research on mucosal immunology, host-microbiome interactions, biomarker discovery, and microbiome-specific inflammotypes.

Data Format:
CSV files: clonotype tables, repertoire metrics, metadata, microbiome abundance.
FASTA/CSV (AIRR format): reconstructed BCR sequences.
TXT/TSV: processed 16S rRNA abundance tables.
Excel/CSV: supplementary tables for clonotype–microbe correlations.
Code: BCR_Clonotyping_Analysis_FullPackage (Python scripts and Jupyter notebooks for full pipeline).

Ethics Statement:
All participants provided written informed consent. The study was approved by the Mulago Hospital Research and Ethics Committee (MHREC; reference no. 2152) and the Uganda National Council for Science and Technology (UNCST) (reference no. HS2035ES) .

Funding:
This work was supported by the Fogarty International Center, National Institutes of Health (R21TW012354, 3R21TW012354-S1, 3R21TW012354-S2).

Keywords:
BCR repertoire, airway microbiome, HIV, COPD, clonotypes, immunoglobulin, induced sputum, repertoire–microbiome interaction, Uganda, BCR_Clonotyping_Analysis_FullPackage
DOI: 10.15468/dl.n93drd
title: Occurrence Download

description: A dataset containing 424 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea seminis (De Vriese) Slooten"
 ]
}

 The dataset includes 424 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017399-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y8fjwd
title: Occurrence Download

description: A dataset containing 169 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea scrobiculata Burck"
 ]
}

 The dataset includes 169 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017398-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qf7nv
title: Occurrence Download

description: A dataset containing 496 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea robusta Gaertn."
 ]
}

 The dataset includes 496 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017396-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/jmtn248cc9.4
title: SoraniTTS dataset : Central Kurdish (CK) Speech Corpus for Text-to-Speech

description: This dataset represents a comprehensive resource for advancing Kurdish TTS systems. Converting text to speech is one of the important topics in the design and construction of multimedia systems, human-machine communication, and information and communication technology, and its purpose, along with speech recognition, is to establish communication between humans and machines in its most basic and natural form, that is, spoken language. 
 For our text corpus, we collected 6,564 sentences from a set of texts in various categories, including news, sport, health, question and exclamation sentences, science, general information, politics, education and literature, story, miscellaneous, and tourism, to create the train sentences. We thoroughly reviewed the texts and normalized them, then they were recorded by a male speaker. We recorded audios in a voice recording studio at 44,100Hz, and all audio files are down sampled to 22,050 Hz in our modeling process. The audio ranges from 3 to 36 seconds in length. We generate the speech corpus in this method, and the last speech has about 6,565 texts and audio pairings, which takes around 19 hours. Altogether, audio files are saved in wave format, and the texts are saved in text files in the corresponding sub-folders. Furthermore, for model training, all of the audio files are gathered in a single folder. Each line in the transcript files is formatted as WAVS | audio file’s name.wav| transcript. The audio file’s name includes the extensions, and the transcript was the speech's text. 
The audio recording and editing process lasted for 90 days. It involved capturing over 6,564 WAV files and over 19 h of recorded speech. The data set helps researchers improve Kurdish TTS early, thereby reducing the time consumed for this process.

Acknowledgments: 
We would like to express our sincere gratitude to Ayoub Mohammadzadeh for his invaluable support in recording the corpus. 

Note:
To use the dataset,Please unzip all folders and place all files inside one folder.
DOI: 10.15468/dl.fdgvr6
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea pallescens P.S.Ashton"
 ]
}

 The dataset includes 25 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017395-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/s3n455b6g5
title: Indian Consumer Resonance with Herbal Products: A Scoping Review of Traditional Lifestyle Knowledge and the Emergence of Herbal as a Unique Selling Proposition

description: The search focused on literature published between 2010 and 2025, using keywords such as herbal products, Indian traditional knowledge, AYUSH, Indian consumer behavior, health culture, natural products, and herbal USP.
DOI: 10.17632/s3n455b6g5.1
title: Indian Consumer Resonance with Herbal Products: A Scoping Review of Traditional Lifestyle Knowledge and the Emergence of Herbal as a Unique Selling Proposition

description: The search focused on literature published between 2010 and 2025, using keywords such as herbal products, Indian traditional knowledge, AYUSH, Indian consumer behavior, health culture, natural products, and herbal USP.
DOI: 10.15468/dl.6atsm8
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea ochrophloia Strugnell ex Desch"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017390-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/8dwmcy55x6
title: Metabolome data of blood oranges

description: Targeted metabolome data of 72 blood orange peels. In this study, the effects of light spectra on anthocyanin biosynthesis in blood orange peel were systematically studied through three treatments of visible light (VL), UV and complete shading (CK). These treatments were combined with transcriptome, anthocyanin targeted metabolome analysis.Metabolomics identified four key anthocyanins, including cyanidin-3-o-glucoside and its 2 derivatives, as the primary contributors to pericarp coloration, with their levels significantly increased under UV exposure.
DOI: 10.15468/dl.hwc5nv
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea obtusa Wall."
 ]
}

 The dataset includes 153 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017389-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqpcpk
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea obscura Meijer"
 ]
}

 The dataset includes 97 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017383-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/8dwmcy55x6.1
title: Metabolome data of blood oranges

description: Targeted metabolome data of 72 blood orange peels. In this study, the effects of light spectra on anthocyanin biosynthesis in blood orange peel were systematically studied through three treatments of visible light (VL), UV and complete shading (CK). These treatments were combined with transcriptome, anthocyanin targeted metabolome analysis.Metabolomics identified four key anthocyanins, including cyanidin-3-o-glucoside and its 2 derivatives, as the primary contributors to pericarp coloration, with their levels significantly increased under UV exposure.
DOI: 10.15468/dl.tm439n
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea oblongifolia Thwaites"
 ]
}

 The dataset includes 93 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017381-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdmc76
title: Occurrence Download

description: A dataset containing 472 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea maxwelliana King"
 ]
}

 The dataset includes 472 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017380-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uysbjg
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea materialis Ridl."
 ]
}

 The dataset includes 45 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017378-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/f8fs32f65g
title: Research data

description: Data
DOI: 10.15468/dl.h6qk3h
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea lissophylla Thwaites"
 ]
}

 The dataset includes 53 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017376-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.taw9mg
title: Occurrence Download

description: A dataset containing 504 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea laevis Ridl."
 ]
}

 The dataset includes 504 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017374-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/f8fs32f65g.1
title: Research data

description: Data
DOI: 10.15468/dl.nr9qwx
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea inappendiculata Burck"
 ]
}

 The dataset includes 96 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017373-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ucs7rf
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea havilandii Brandis"
 ]
}

 The dataset includes 107 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017372-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4bbt89
title: Occurrence Download

description: A dataset containing 613 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea guiso (Blanco) Blume"
 ]
}

 The dataset includes 613 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017371-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hg9m42
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea glauca King"
 ]
}

 The dataset includes 107 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017369-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jy84jw
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea geniculata Symington ex P.S.Ashton"
 ]
}

 The dataset includes 18 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017364-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c6t67t
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea foxworthyi Symington"
 ]
}

 The dataset includes 76 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017362-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c38ekt
title: Occurrence Download

description: A dataset containing 359 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea falciferoides Foxw."
 ]
}

 The dataset includes 359 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017361-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.99s5xf
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea exelliptica Meijer"
 ]
}

 The dataset includes 93 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017359-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hcwp9k
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea dyeri Thwaites ex Trimen"
 ]
}

 The dataset includes 64 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017356-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvxjn8
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea domatiosa P.S.Ashton"
 ]
}

 The dataset includes 77 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017353-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3qhgjj
title: Occurrence Download

description: A dataset containing 3029 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "Geometry POLYGON((-9.85410 37.03737,9.59967 37.03737,9.59967 44.81554,-9.85410 44.81554,-9.85410 37.03737))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Miniopterus schreibersii"
 ]
}

 The dataset includes 3029 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003878-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rtfk4k
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea crassa P.S.Ashton"
 ]
}

 The dataset includes 47 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017352-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.byc2h9
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea collina Ridl."
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017351-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15561109
title: Data for article "xxxxxxx"

description: Experimental research raw data supporting the article "xxxx" published in the XXXx, DOI: 

All details concerning conditions and equipment for measurements can be found in the supporting information of the article.
DOI: 10.5281/zenodo.17122253
title: Data for article "xxxxxxx"

description: Experimental research raw data supporting the article "xxxx" published in the XXXx, DOI: 

All details concerning conditions and equipment for measurements can be found in the supporting information of the article.
DOI: 10.15468/dl.4cj34x
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Shorea biawak P.S.Ashton"
 ]
}

 The dataset includes 44 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017348-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.