cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11456353
title: Relate-inferred genealogies for 66 longread Arabidopsis thaliana genomes

description: Relate-inferred genealogies for 66 longread Arabidopsis thaliana genomes.

The genomes are the samples used in Wlodzimierz et al. 2023 (https://doi.org/10.1038/s41586-023-06062-z). 

longread-trees.tar.gz contains the output of Relate's estimate population size command (https://myersgroup.github.io/relate/modules.html#CoalescenceRate), including an anc/mut/dist/coal file for every chromosome. It also constains a tskit tree sequence (https://tskit.dev/) for each chromosome, converted from anc/mut.

Thal_ref_Boec_Lyra_Malc_outgroups_nodupes_orthoonly.maf is the multi-species alignment (kindly provided by Tyler Kent, Adrian Platts, and the Brassicales Map Alignment Project (DOE-JGI, http://bmap.jgi.doe.gov/)) that we used to polarize the alleles.

Snakefile is the code we used to generate the genealogies.
DOI: 10.5281/zenodo.5099656
title: Relate-inferred genealogies for 66 longread Arabidopsis thaliana genomes

description: Relate-inferred genealogies for 66 longread Arabidopsis thaliana genomes.

The genomes are the samples used in Wlodzimierz et al. 2023 (https://doi.org/10.1038/s41586-023-06062-z). 

longread-trees.tar.gz contains the output of Relate's estimate population size command (https://myersgroup.github.io/relate/modules.html#CoalescenceRate), including an anc/mut/dist/coal file for every chromosome. It also constains a tskit tree sequence (https://tskit.dev/) for each chromosome, converted from anc/mut.

Thal_ref_Boec_Lyra_Malc_outgroups_nodupes_orthoonly.maf is the multi-species alignment (kindly provided by Tyler Kent, Adrian Platts, and the Brassicales Map Alignment Project (DOE-JGI, http://bmap.jgi.doe.gov/)) that we used to polarize the alleles.

Snakefile is the code we used to generate the genealogies.
DOI: 10.15468/dl.fdijct
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bacteria",
 "DecimalLatitude is greater than 38.1275219194608",
 "DecimalLatitude is less than 38.7667987922393",
 "DecimalLongitude is greater than -96.9411976686402",
 "DecimalLongitude is less than -96.1586525644246"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005477-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kwajzr
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Hillia palmana Standl.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 204 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018750-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zfumnq
title: Occurrence Download

description: A dataset containing 3933 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "TaxonKey is Burkea africana Hook."
 ]
}

 The dataset includes 3933 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009628-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111304478
title: Church of St. Nicholas of the Roof, Ayios Nikolaos tis Stegis

description: [Text Description:] A domed church of the early eleventh century dedicated to St. Nicholas. ❧ [Medium:] Stone ❧ [Script Note:] Greek, Non-Text ❧ [Physical Object Description:] A domed church of the early eleventh century with a later steep-pitched room for protection against the snow. Located about 3 miles above Kakopetria, Cyprus in a wooded valley near a stream. ❧ [Physical Object Note:] The church is the sole remnant of an old monastery founded in the 11th century that flourished in the mid-Byzantine period and during Frankish rule but fell into decline in the 18th century, eventually dissolving. ❧ [Physical Object Note:] The church belongs to the domed cross-in square plan and gets its name from the second timber roof with flat tiles that were made in the Soleas district. The narthex, covered by a calotte and two traverse arches, was added at the beginning of the 12th century. At a later stage the church's original appearance was altered resulting in the destruction of important paintings. ❧
DOI: 10.15468/dl.zy40ct
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tanacetum joharchii Sonboli & Kaz.Osaloo"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014489-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yjclwk
title: Occurrence Download

description: A dataset containing 1113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Monomorium pharaonis (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1113 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018763-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xu5az3
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((174.28979 -35.73553,174.30242 -35.73464,174.31615 -35.7226,174.31561 -35.71234,174.30352 -35.70208,174.281 -35.69718,174.25628 -35.69852,174.2409 -35.69316,174.22387 -35.70164,174.20464 -35.69539,174.19585 -35.70253,174.20794 -35.71547,174.22057 -35.72751,174.2387 -35.72082,174.24804 -35.72483,174.25463 -35.73241,174.2766 -35.73999,174.28979 -35.73553))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Prosthemadera novaeseelandiae (J.F.Gmelin, 1788)",
 "Year 2020-2020"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0308447-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zbidkj
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bacteria",
 "DecimalLatitude is greater than 40.4629657357052",
 "DecimalLatitude is less than 41.0015466771355",
 "DecimalLongitude is greater than -74.3553636876677",
 "DecimalLongitude is less than -73.6460138879085"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005474-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111132559
title: Leather Cord from Qumran, Schoyen MS 5095/6

description: [Text Description:] Several pieces of leather cord ❧ [Text or Publication Number Note:] Schoyen MS 5095/6 ❧ [Medium:] Leather ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] 8 pieces of a leather cord, including 2 pieces tied together in a knot ❧ [Physical Object Note:] Width c. 6-7mm; longest piece is 74mm; another 70mm; two ends of cord tied in knot are 33mm and 13mm
DOI: 10.25549/inscriptifact-ouc111132512
title: Leather Cord from Qumran, Schoyen MS 5095/6

description: [Text Description:] Several pieces of leather cord ❧ [Text or Publication Number Note:] Schoyen MS 5095/6 ❧ [Medium:] Leather ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] 8 pieces of a leather cord, including 2 pieces tied together in a knot ❧ [Physical Object Note:] Width c. 6-7mm; longest piece is 74mm; another 70mm; two ends of cord tied in knot are 33mm and 13mm
DOI: 10.15468/dl.3emje7
title: Occurrence Download

description: A dataset containing 390351 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Droseraceae"
 ]
}

 The dataset includes 390351 records from 957 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0308452-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4w1jj
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Mitraria coccinea Cav.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 111 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018753-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjltkn
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Puya pratensis L.B.Sm."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005482-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111132514
title: Leather Cord from Qumran, Schoyen MS 5095/6

description: [Text Description:] Several pieces of leather cord ❧ [Text or Publication Number Note:] Schoyen MS 5095/6 ❧ [Medium:] Leather ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] 8 pieces of a leather cord, including 2 pieces tied together in a knot ❧ [Physical Object Note:] Width c. 6-7mm; longest piece is 74mm; another 70mm; two ends of cord tied in knot are 33mm and 13mm
DOI: 10.15468/dl.pjp298
title: Occurrence Download

description: A dataset containing 2456 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anolis equestris Merrem, 1820"
 ]
}

 The dataset includes 2456 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0436460-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83pune
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((101.42398 15.68859,132.07613 23.91833,120.70142 36.78931,108.00586 38.81374,93.1941 33.65258,101.42398 15.68859))",
 "TaxonKey is Eucommiaceae"
 ]
}

 The dataset includes 213 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0308458-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pl3vkf
title: Occurrence Download

description: A dataset containing 2175 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Moloch horridus Gray, 1841",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2175 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018755-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111305661
title: Monastery of St. John Lampadistis, Ayios Ioannis Lambadhistis Monastery

description: [Text Description:] Complex of 3 churches under one Roof, 11th-18th c. ❧ [Medium:] Stone ❧ [Script Note:] Greek, Non-Text ❧ [Physical Object Description:] Located on east side of stream Setrachos, running along east side of village of Kaopanayiotes. The monastery is a complex of three churches sharing a single pitched roof. Beyond the monastic enclosure is the old schoolhouse, now an icon museum. ❧ [Physical Object Note:] The three churches are: Agios Herakleidios, Ioannis Lampadistis and a Latin Chapel. Agios Herakleidios, built in the 11th c., decorated primarily in 13th c., is a cross-in-square building with four piers supporting a central dome. Ioannis Lamadistis probably built in 1731, on the north side of Herakleidios. No records exist regarding the Latin Chapel. It opens on the north side of the Lampdistis church. A narthex runs along the west side of Herakleidios and Lampadistis. ❧ [Physical Object Note:] In Agios Herakleidios, a few early paintings date to the 12th c. Most of the paintings are 13th c., with a late period series done around 1400. Ioannis Lampadistis contains a reliquary and icon of St. Ioannis (John) Lampadistis. The paintings in the Latin Chapel are Italo-Byzantine; the vaulting is Italianate. The walls north and south are illustrations of the 24 stanzas of the Akathistos Hymn to the Virgin. Some paintings are more Byzantine, others more Italian. ❧
DOI: 10.15468/dl.hwr5ab
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bacteria",
 "DecimalLatitude is greater than 40.4704589653052",
 "DecimalLatitude is less than 41.006717716958",
 "DecimalLongitude is greater than -74.3413189800143",
 "DecimalLongitude is less than -73.6363627970185"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005481-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111305662
title: Monastery of St. John Lampadistis, Ayios Ioannis Lambadhistis Monastery

description: [Text Description:] Complex of 3 churches under one Roof, 11th-18th c. ❧ [Medium:] Stone ❧ [Script Note:] Greek, Non-Text ❧ [Physical Object Description:] Located on east side of stream Setrachos, running along east side of village of Kaopanayiotes. The monastery is a complex of three churches sharing a single pitched roof. Beyond the monastic enclosure is the old schoolhouse, now an icon museum. ❧ [Physical Object Note:] The three churches are: Agios Herakleidios, Ioannis Lampadistis and a Latin Chapel. Agios Herakleidios, built in the 11th c., decorated primarily in 13th c., is a cross-in-square building with four piers supporting a central dome. Ioannis Lamadistis probably built in 1731, on the north side of Herakleidios. No records exist regarding the Latin Chapel. It opens on the north side of the Lampdistis church. A narthex runs along the west side of Herakleidios and Lampadistis. ❧ [Physical Object Note:] In Agios Herakleidios, a few early paintings date to the 12th c. Most of the paintings are 13th c., with a late period series done around 1400. Ioannis Lampadistis contains a reliquary and icon of St. Ioannis (John) Lampadistis. The paintings in the Latin Chapel are Italo-Byzantine; the vaulting is Italianate. The walls north and south are illustrations of the 24 stanzas of the Akathistos Hymn to the Virgin. Some paintings are more Byzantine, others more Italian. ❧
DOI: 10.15468/dl.8zr5kq
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((174.30022 -35.73381,174.31396 -35.72444,174.3178 -35.71329,174.30901 -35.70482,174.29308 -35.70259,174.2821 -35.69902,174.26122 -35.69991,174.24529 -35.69679,174.23046 -35.69857,174.21343 -35.69679,174.19805 -35.69723,174.20542 -35.70945,174.2081 -35.71947,174.21937 -35.72775,174.23279 -35.72426,174.25641 -35.72862,174.26661 -35.73777,174.30022 -35.73381))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhipidura fuliginosa (Sparrman, 1787)",
 "Year 2018-2020"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0308459-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.66rqzd
title: Occurrence Download

description: A dataset containing 2176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Monomorium minimum (Buckley, 1867)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2176 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018767-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111305616
title: Monastery of St. John Lampadistis, Ayios Ioannis Lambadhistis Monastery

description: [Text Description:] Complex of 3 churches under one Roof, 11th-18th c. ❧ [Medium:] Stone ❧ [Script Note:] Greek, Non-Text ❧ [Physical Object Description:] Located on east side of stream Setrachos, running along east side of village of Kaopanayiotes. The monastery is a complex of three churches sharing a single pitched roof. Beyond the monastic enclosure is the old schoolhouse, now an icon museum. ❧ [Physical Object Note:] The three churches are: Agios Herakleidios, Ioannis Lampadistis and a Latin Chapel. Agios Herakleidios, built in the 11th c., decorated primarily in 13th c., is a cross-in-square building with four piers supporting a central dome. Ioannis Lamadistis probably built in 1731, on the north side of Herakleidios. No records exist regarding the Latin Chapel. It opens on the north side of the Lampdistis church. A narthex runs along the west side of Herakleidios and Lampadistis. ❧ [Physical Object Note:] In Agios Herakleidios, a few early paintings date to the 12th c. Most of the paintings are 13th c., with a late period series done around 1400. Ioannis Lampadistis contains a reliquary and icon of St. Ioannis (John) Lampadistis. The paintings in the Latin Chapel are Italo-Byzantine; the vaulting is Italianate. The walls north and south are illustrations of the 24 stanzas of the Akathistos Hymn to the Virgin. Some paintings are more Byzantine, others more Italian. ❧
DOI: 10.15468/dl.h7y6ea
title: Occurrence Download

description: A dataset containing 382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bacteria",
 "DecimalLatitude is greater than 38.6223012249032",
 "DecimalLatitude is less than 39.1699483826646",
 "DecimalLongitude is greater than -77.4115466445071",
 "DecimalLongitude is less than -76.7144568419769"
 ]
}

 The dataset includes 382 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005479-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111305664
title: Monastery of St. John Lampadistis, Ayios Ioannis Lambadhistis Monastery

description: [Text Description:] Complex of 3 churches under one Roof, 11th-18th c. ❧ [Medium:] Stone ❧ [Script Note:] Greek, Non-Text ❧ [Physical Object Description:] Located on east side of stream Setrachos, running along east side of village of Kaopanayiotes. The monastery is a complex of three churches sharing a single pitched roof. Beyond the monastic enclosure is the old schoolhouse, now an icon museum. ❧ [Physical Object Note:] The three churches are: Agios Herakleidios, Ioannis Lampadistis and a Latin Chapel. Agios Herakleidios, built in the 11th c., decorated primarily in 13th c., is a cross-in-square building with four piers supporting a central dome. Ioannis Lamadistis probably built in 1731, on the north side of Herakleidios. No records exist regarding the Latin Chapel. It opens on the north side of the Lampdistis church. A narthex runs along the west side of Herakleidios and Lampadistis. ❧ [Physical Object Note:] In Agios Herakleidios, a few early paintings date to the 12th c. Most of the paintings are 13th c., with a late period series done around 1400. Ioannis Lampadistis contains a reliquary and icon of St. Ioannis (John) Lampadistis. The paintings in the Latin Chapel are Italo-Byzantine; the vaulting is Italianate. The walls north and south are illustrations of the 24 stanzas of the Akathistos Hymn to the Virgin. Some paintings are more Byzantine, others more Italian. ❧
DOI: 10.15468/dl.8kxm4g
title: Occurrence Download

description: A dataset containing 53494 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "Country is Guyana",
 "Country is Suriname",
 "Country is French Guiana"
 ]
 },
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 53494 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009641-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ndh2zl
title: Occurrence Download

description: A dataset containing 1341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-69.54895 -17.49683,-69.83459 -17.7605,-70.6366 -18.44165,-70.53772 -23.24268,-67.31873 -22.93506,-68.42834 -19.38647,-69.08752 -18.01318,-69.54895 -17.49683))",
 "HasCoordinate is true",
 "TaxonKey is Chloephaga melanoptera (Eyton, 1838)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1341 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018768-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111305709
title: Monastery of St. John Lampadistis, Ayios Ioannis Lambadhistis Monastery

description: [Text Description:] Complex of 3 churches under one Roof, 11th-18th c. ❧ [Medium:] Stone ❧ [Script Note:] Greek, Non-Text ❧ [Physical Object Description:] Located on east side of stream Setrachos, running along east side of village of Kaopanayiotes. The monastery is a complex of three churches sharing a single pitched roof. Beyond the monastic enclosure is the old schoolhouse, now an icon museum. ❧ [Physical Object Note:] The three churches are: Agios Herakleidios, Ioannis Lampadistis and a Latin Chapel. Agios Herakleidios, built in the 11th c., decorated primarily in 13th c., is a cross-in-square building with four piers supporting a central dome. Ioannis Lamadistis probably built in 1731, on the north side of Herakleidios. No records exist regarding the Latin Chapel. It opens on the north side of the Lampdistis church. A narthex runs along the west side of Herakleidios and Lampadistis. ❧ [Physical Object Note:] In Agios Herakleidios, a few early paintings date to the 12th c. Most of the paintings are 13th c., with a late period series done around 1400. Ioannis Lampadistis contains a reliquary and icon of St. Ioannis (John) Lampadistis. The paintings in the Latin Chapel are Italo-Byzantine; the vaulting is Italianate. The walls north and south are illustrations of the 24 stanzas of the Akathistos Hymn to the Virgin. Some paintings are more Byzantine, others more Italian. ❧