cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28917319.v1
title: An update on knowledge graphs and their current and potential applications in drug discovery

description: Knowledge graphs are becoming prominent tools in computational drug discovery. They effectively integrate heterogeneous biomedical data and generate new hypotheses and knowledge. This article is based on a literature review using Google Scholar and PubMed to retrieve articles on existing knowledge graphs relevant to the drug discovery field. The authors compare the types of entities, relationships, and data sources they encompass. Additionally, the authors provide examples of their use in the drug discovery field and discuss potential strategies for advancing this research area. Knowledge graphs are crucial in drug discovery, but their construction leads to challenges in data integration and consistency. Future research should prioritize the standardization of data sources and data modeling. More efforts are needed for the integration in knowledge graphs of diverse data types, such as chemical structures and epigenetic data, to enhance their effectiveness. Additionally, advancements in large language models should be pursued to aid the development of knowledge graphs, provide intuitive querying capabilities for non-expert users, and explain knowledge graphs -derived predictions, thereby making these tools more accessible and their insights more interpretable for a wider audience.
DOI: 10.5281/zenodo.15705928
title: 3D ED raw data for "Structure–property relationships in disodium anthracene dicarboxylate for sodium-ion storage via 3D electron diffraction"

description: 3D ED data for the crystal structure in the title publication (https://doi.org/10.1039/D5CC03175C). Data were collected using continuous rotation in selected area mode. The table below summarizes generic data collection parameters for the data collection.

 




Collection site
University of Southampton, NCS/NEDF


Sample label(s)
2024NCS0534


Crystal structure deposit
CSD 2415532


 
 


Instrumental
 


Instrument
Rigaku XtaLAB Synergy-ED, electron diffractometer


Radiation source
LaB6


Accelerating voltage [kV]
200


Wavelength [Å]
0.0251


Probe type
Parallel beam (SAED)


Beam convergence
Parallel beam


Detector
Rigaku HyPix-ED, hybrid pixel array detector


Number of pixels in the image
775 x 385


Pixel size [µm]
100


Hardware binning
1


 
 


Sample description
 


Name
Na2-ADC


Chemical composition
C16 H8 Na2 O4


Sample source
Synthesis


Grid
lacey carbon coated copper grid, 200 mesh (Agar Scientific)


Sample preparation
Sample ground between glass slides, grid dabbed, cryo transfer @ 175 K


Sample holder
GATAN Elsa cryo-transfer holder 698


 
 


Experimental
 


Data type
Electron diffraction data - 3D ED


Data collection method
Continuous rotation  - cRED


Collection temperature [K]
175


 
 


Software
 


Software used for the data collection
CrysAlisPro 1.171.44.65a


Software used for processing
CrysAlisPro 1.171.44.65a


 
 


Files and data formats
 


Image folders
./frames/xxx.rodhypix./frames/TIFF/xxx.tiff


Image format
.rodhypix.tiff (converted with CrysAlisPro)


Additional files


 

CrysAlisPro files:

./expinfo/./expinfo/exp_XXXX_datacoll.ini

./plots_dc.plots_dc/exp_XXX_hypix.dat.plots_dc/exp_XXX_Jeol_MicroED.dat.plots_dc/exp_XXX_primarybeam.dat.plots_dc/exp_XXX_primarybeam_0.jpg

./CrysalisExpSettings.ini./exp_XXX.par./exp_XXX.run./new.ccd

 

Grain snapshots files:

./exp_XXXX_microed_grain_snapshot.rodhypix./exp_XXXX_microed_grain_snapshot.tiff
DOI: 10.5281/zenodo.15705929
title: 3D ED raw data for "Structure–property relationships in disodium anthracene dicarboxylate for sodium-ion storage via 3D electron diffraction"

description: 3D ED data for the crystal structure in the title publication (https://doi.org/10.1039/D5CC03175C). Data were collected using continuous rotation in selected area mode. The table below summarizes generic data collection parameters for the data collection.

 




Collection site
University of Southampton, NCS/NEDF


Sample label(s)
2024NCS0534


Crystal structure deposit
CSD 2415532


 
 


Instrumental
 


Instrument
Rigaku XtaLAB Synergy-ED, electron diffractometer


Radiation source
LaB6


Accelerating voltage [kV]
200


Wavelength [Å]
0.0251


Probe type
Parallel beam (SAED)


Beam convergence
Parallel beam


Detector
Rigaku HyPix-ED, hybrid pixel array detector


Number of pixels in the image
775 x 385


Pixel size [µm]
100


Hardware binning
1


 
 


Sample description
 


Name
Na2-ADC


Chemical composition
C16 H8 Na2 O4


Sample source
Synthesis


Grid
lacey carbon coated copper grid, 200 mesh (Agar Scientific)


Sample preparation
Sample ground between glass slides, grid dabbed, cryo transfer @ 175 K


Sample holder
GATAN Elsa cryo-transfer holder 698


 
 


Experimental
 


Data type
Electron diffraction data - 3D ED


Data collection method
Continuous rotation  - cRED


Collection temperature [K]
175


 
 


Software
 


Software used for the data collection
CrysAlisPro 1.171.44.65a


Software used for processing
CrysAlisPro 1.171.44.65a


 
 


Files and data formats
 


Image folders
./frames/xxx.rodhypix./frames/TIFF/xxx.tiff


Image format
.rodhypix.tiff (converted with CrysAlisPro)


Additional files


 

CrysAlisPro files:

./expinfo/./expinfo/exp_XXXX_datacoll.ini

./plots_dc.plots_dc/exp_XXX_hypix.dat.plots_dc/exp_XXX_Jeol_MicroED.dat.plots_dc/exp_XXX_primarybeam.dat.plots_dc/exp_XXX_primarybeam_0.jpg

./CrysalisExpSettings.ini./exp_XXX.par./exp_XXX.run./new.ccd

 

Grain snapshots files:

./exp_XXXX_microed_grain_snapshot.rodhypix./exp_XXXX_microed_grain_snapshot.tiff
DOI: 10.15468/dl.zkxjby
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Discostella stelligera (Cleve & Grunow) Houk & Klee, 2004",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((32.064 -28.9416,32.4847 -28.5786,30.5701 -28.5786,30.5701 -30.7329,30.6252 -30.6659,31.4179 -29.4257,31.8178 -29.0299,32.064 -28.9416))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065178-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15721726
title: Appendix to the study of informative priors in the EFSA platform for Bayesian benchmark dose analysis

description: This repository contains the supplementary material accompanying the report on the study of informative priors in the EFSA platform for Bayesian benchmark dose analysis (not published yet).
description: BE; html; cecile.kremer@uhasselt.be
DOI: 10.5281/zenodo.15721727
title: Appendix to the study of informative priors in the EFSA platform for Bayesian benchmark dose analysis

description: This repository contains the supplementary material accompanying the report on the study of informative priors in the EFSA platform for Bayesian benchmark dose analysis (not published yet).
description: BE; html; cecile.kremer@uhasselt.be
DOI: 10.15470/ego4ut
title: Dung beetles of Azorean cattle-grazed pasturelands ? data of the DUNGPOOL project

description: The data we present are part of the project DUNGPOOL ("Effects of species pool and community assembly processes on dung beetle diversity and ecosystem functions in a warming world"). This project aims to evaluate the effects of the species pool, community assembly processes, and increasing temperatures on the local diversity and ecosystem services performed by dung beetles in island and mainland cattle-grazed pasturelands.
To do so, during June and July 2024, we used 306 pitfall traps baited with fresh cow dung, that were placed in 87 sites distributed in Terceira, Faial and Pico islands of the Azores archipelago (Portugal). A total of 1,141 dung beetles were recorded across these islands: 643 individuals in Terceira, 480 individuals in Faial, and 18 individuals in Pico. These individuals were distributed among four species: Calamosternus granarius, Labarrus lividus, Onthophagus medius and Onthophagus taurus.
DOI: 10.15468/dl.3ckbdp
title: Occurrence Download

description: A dataset containing 52630 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Chlorocichla flaviventris (A.Smith, 1834)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 52630 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065163-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.faydnt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Discostella stelligera (Cleve & Grunow) Houk & Klee, 2004",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.5808 -24.13,35.5909 -24.0715,30.5701 -24.0715,30.5701 -28.5786,32.4847 -28.5786,32.55 -28.5222,33.0346 -26.8668,32.9741 -26.7838,33.0415 -26.059,32.9304 -26.0011,32.7994 -26.1281,32.6834 -26.0015,32.813 -25.8728,32.8513 -25.7166,33.3048 -25.3731,35.1489 -24.6699,35.5808 -24.13))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065179-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4xc3c
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Angola",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Brachystegia spiciformis Benth."
 ]
}

 The dataset includes 81 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065180-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r6etz8
title: Occurrence Download

description: A dataset containing 2825 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Chlorocichla laetissima (Sharpe, 1899)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 2825 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065181-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxkg6j
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-75.26253 7.07696,-74.99573 7.07696,-74.99573 7.46129,-75.26253 7.46129,-75.26253 7.07696))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 67 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065182-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15721820
title: Heat-Press NFC Garment Badge – NTAG® 424 DNA

description: The NTAG® 424 DNA-based Heat-Press NFC Garment Badge combines secure authentication with dynamic user engagement in a wearable format. With its 25mm silicone housing and heat-press compatibility, this NFC-enabled badge is ideal for applications in fashion-tech, brand protection, and digital product passports. Designed with NXP's NTAG® 424 DNA chip, the badge supports encrypted communication, tap-based authentication, and seamless mobile interaction. Learn more and explore its use cases on the official product page.

🔗 Product Page – Heat-Press NFC Garment Badge
DOI: 10.5281/zenodo.15721819
title: Heat-Press NFC Garment Badge – NTAG® 424 DNA

description: The NTAG® 424 DNA-based Heat-Press NFC Garment Badge combines secure authentication with dynamic user engagement in a wearable format. With its 25mm silicone housing and heat-press compatibility, this NFC-enabled badge is ideal for applications in fashion-tech, brand protection, and digital product passports. Designed with NXP's NTAG® 424 DNA chip, the badge supports encrypted communication, tap-based authentication, and seamless mobile interaction. Learn more and explore its use cases on the official product page.

🔗 Product Page – Heat-Press NFC Garment Badge
DOI: 10.15468/dl.fuc3nm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Discostella stelligera (Cleve & Grunow) Houk & Klee, 2004",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((31.8862 -21.3285,30.5701 -20.3186,30.5701 -24.0715,35.5909 -24.0715,35.6007 -24.0157,35.6007 -23.8125,35.4969 -23.7035,35.6007 -23.165,35.6007 -22.9702,35.227 -22.2482,34.6862 -21.6944,34.013 -21.3095,33.5 -21.1593,32.9675 -21.1092,32.4352 -21.1612,31.8862 -21.3285))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065183-250525065834625/datasets/export for details.
DOI: 10.57745/hvdmnu
title: Manuels utilisateur de l'application MEANS-InOut

description: La documentation utilisateur du logiciel MEANS-InOut est composée de 3 documents indépendants et complémentaires : Manuel d'utilisation de MEANS-InOut ; Fonctionnalités logicielles. Manuel d'utilisation de MEANS-InOut ; Saisir les données de description de système. Manuel d'utilisation des fonctionnalités d'export et d'import de la plateforme MEANS. Leur objectif est de fournir une aide détaillée aux utilisateurs et servir de support de formation au logiciel MEANS-InOut. Le but du logiciel MEANS-InOut est de faciliter la création d'inventaire de cycle de vie de produits végétaux, animaux et de produits et procédés alimentaires.
DOI: 10.6084/m9.figshare.29382890.v1
title: <b>Tag weighing 1% body mass causes reduced body mass in an Arctic diving seabird, the thick-billed murre</b>

description: Dataset used to look at the impact of tagging in thick-billed murres from Coats Island
DOI: 10.6084/m9.figshare.29382890
title: <b>Tag weighing 1% body mass causes reduced body mass in an Arctic diving seabird, the thick-billed murre</b>

description: Dataset used to look at the impact of tagging in thick-billed murres from Coats Island
DOI: 10.15468/dl.3z5c7g
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pteropus vampyrus (Linnaeus, 1758)",
 "Year 2015-2025"
 ]
}

 The dataset includes 41 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065184-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5wnz4k
title: Occurrence Download

description: A dataset containing 164259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Phytolacca americana L."
 ]
}

 The dataset includes 164259 records from 1454 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065173-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zeua3m
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantago patagonica Jacq.",
 "Country is United States of America",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005835-250127130748423/datasets/export for details.
DOI: 10.6084/m9.figshare.28319603
title: calibration.cal

description: Calibration file
DOI: 10.6084/m9.figshare.28315133
title: Transcript-level data from CosMx study of childhood-onset lupus nephritis

description: Transcript data used in the manuscript, "FastReseg: using transcript locations to refine image-based cell segmentation results in spatial transcriptomics."
DOI: 10.15468/dl.8va8f2
title: Occurrence Download

description: A dataset containing 3897 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantago patagonica Jacq."
 ]
}

 The dataset includes 3897 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005836-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6uszzf
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bulinus O.F.Müller, 1781"
 ]
}

 The dataset includes 28 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005837-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7e8ms3
title: Occurrence Download

description: A dataset containing 133188 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen)",
 "Geometry POLYGON((-121.47 43.97,-98.54 43.97,-98.54 49.54,-121.47 49.54,-121.47 43.97))",
 "HasCoordinate is true",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 133188 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005834-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28319618
title: streamflow_observations.zip

description: Streamflow Observation data
DOI: 10.6084/m9.figshare.28054031
title: Analgesic effect of simultaneously targeting multiple pain processing brain circuits in an aged humanized mouse model of chronic pain by transcranial focused ultrasound (Ultrasound Characterizations: Ex-vivo Scanning)

description: We have demonstrated a more accessible, non-invasive transcranial focused ultrasound pain treatment strategy for senior subjects. This approach involves simultaneously targeting multiple pain-processing circuits using a battery-powered, compact, and low-cost ultrasound analog front end.The dataset includes 2 .mat files with formatted transcranial focused ultrasound pressure scanned through hydrophone in the free water and presence of a freshly excised mouse skull sample (3-dimensional variable: <b>Intensity_locations</b>). Each file name is labeled with the scanning scenarios, i.e., free water vs. mouse skull along with custom-built and battery-operated ultrasound analog front end. The spatial step sizes of the 3D matrix (<b>Intensity_locations</b>) are included in each of these files (variables: step for x and y dimensions, slice for z dimension, physical unit: mm). The pulse duration (PD) is 200 micro-second, and center frequency of the transducer is 500 kHz. The variables <b>xaxis_locations, yaxis_locations, </b>and<b> zaxis_locations</b> described the total step/slice numbers along those three directions.This work was supported in part by NIH EB029354, NS124564, NS131069, and HL147562. More information can be found in the corresponding manuscript:Kim MG, Yeh C-Y, Yu K, Li Z, Gupta K, He B. Analgesic effect of simultaneously targeting multiple pain processing brain circuits in an aged humanized mouse model of chronic pain by transcranial focused ultrasound. APL Bioengineering.If anyone uses the whole or part of the dataset provided here, we kindly ask you to cite the above publication in any of your publications or presentations.
DOI: 10.15468/dl.c4kee3
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Biomphalaria Preston, 1910, Bulinus O.F.Müller, 1781)"
 ]
}

 The dataset includes 34 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005838-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hs7vve
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen)",
 "Geometry POLYGON((-121.47 43.97,-98.54 43.97,-98.54 49.54,-121.47 49.54,-121.47 43.97))",
 "HasCoordinate is true",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Ochrophyta"
 ]
}

 The dataset includes 127 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005840-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00007163
title: Prospective validation of the Lung Immune Prognostic Index in patients with non-small cell and small cell lung cancers.

description: Lung cancer is the first cause of cancer death worldwide. Non-small cell lung cancer (NSCLC) is a type of cancer that accounts for 85% of lung cancer. Its major risk factor is smoking. In patients with metastases, the main treatments combine chemotherapy and immunotherapy. lmmunotherapy involves boosting the immune system in order to unmask cancer cells and destroy them. Inflammation is a negative factor for immunotherapy efficacy. Inflammation is identified by several components in blood (i.e.) inflammatory biomarkers which can be measured in blood tests. Our team has created the Lung Immune Prognostic Index (LIPI) based on inflammatory biomarkers levels at the introduction of immunotherapy. The objective of this research is to apply the LIPI on a large population of patients included in prospective trials and to assess the potential value in the treatment choice for patients with lung cancer