cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15161/oar.it/73342
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.4228/zalf.dk.146
title: Intra- and interspecific trait variation and abundance of dry grassland plants

description: One of the few laws in ecology is that communities consist of few common and many rare taxa. Functional traits may help to identify the underlying mechanisms of this community pattern, since they correlate with different niche dimensions. However, comprehensive studies are missing that investigate the effects of species mean traits (niche position) and intraspecific trait variability (ITV, niche width) on species abundance. In this study, we tested three predictions: species abundance a) increases (or decreases) with species mean traits, b) is highest for intermediate species mean traits, and c) increases with ITV. We measured three plant functional traits (specific leaf area, leaf dry matter content, plant height) at 21 local dry grassland communities (10m x 10m) and analyzed the effect of these traits and their variation on species abundance at the local and regional scale. In our analyses we compared phylogenetic-corrected with standard models, in order to reveal whether the relationships between traits and species abundance are influenced by the species’ phylogeny. At the local scale, we found that species abundance increased with species mean leaf dry matter content and the intraspecific variations of leaf dry matter content and plant height. In contrast, at the regional scale, plants with a higher ITV of plant height were less abundant. We found no evidence that the consideration of phylogenetic-relationships influenced significantly our findings nor that species with intermediate traits were more abundant. Overall, our results indicate that the tolerance towards environmental conditions rather than competitive ability drives species abundance. Hereby, ITV may be particularly beneficial in heterogeneous environments at the local scale. However, the contrasting effect of ITV at the regional scale shows that trait-abundance relationships seem to be highly scale-dependent.
description: Data collection took place at 21 dry grassland patches. Within each patch, one 10 m x 10 m plot in a visually homogeneous area was established. At each plot, nested vegetation surveys were conducted including eight 0.3 m x 0.3 m subplots. Local abundance defines the species frequency within these eight 0.3 m x 0.3 m subplots. Regional abundance was defined as the frequency of species occurring in the 21 plots. At each plot, six perennial species were chosen randomly for trait measurements and sampled with twelve randomly selected individuals per species within the plots.<br>Traits were measured for all selected individuals following Perez-Harguindeguy et al. (2013).
DOI: 10.5281/zenodo.4326956
title: Dublin 2016 Small Area Boundaries with Postcodes, Small Area & Electoral District IDs

description: This dataset contains the Dublin 2011 Small Area boundaries (from the Ireland Central Statistics Office (CSO) 2011 Small Area boundaries) linked to the Dublin Postcode IDs (from Dublin Postcode Boundaries), Small Area IDs & Electoral District IDs
DOI: 10.5281/zenodo.4326882
title: Dublin 2011 Small Area Boundaries with Postcodes, Small Area & Electoral District IDs

description: This dataset contains the Dublin 2011 Small Area boundaries (from the Ireland Central Statistics Office (CSO) 2011 Small Area boundaries) linked to the Dublin Postcode IDs (from Dublin Postcode Boundaries), Small Area IDs & Electoral District IDs
DOI: 10.5281/zenodo.4326969
title: Messenger RNA-seq data from leaves, stem trichomes, bald stems and leaf primordia from different tomato genetic backgrounds

description: <strong>RNA isolation</strong> To isolate RNA, plant tissues were flash frozen in liquid nitrogen immediately after harvesting and stored at −80°C prior to RNA extraction. Frozen pellets were grounded by using a mortar and pestle before immersion in QIAzol Lysis Reagent (Qiagen). RNA was isolated and purified into two separate fractions (&gt;200 nt and &lt;200 nt) using the miRNeasy Mini kit (Qiagen). For the &gt;200 nt RNA an on-column treatment was included using the RNase-free DNase set (Qiagen). <strong>mRNA sequencing protocol</strong> A poly-A enrichment was performed on the &gt;200 nt RNA fraction using the NEBNext Poly(A) mRNA Magnetic Isolation Module (New England BioLabs). RNA-Seq libraries were generated according to the manufacturers’ protocols using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina and NEBNext Multiplex Oligos for Illumina (Unique Dual Index Primer Pairs) (New England BioLabs). The size distribution of the libraries with indexed adapters was assessed using a 2200 TapeStation System with Agilent D1000 ScreenTapes (Agilent Technologies). The libraries were quantified on a QuantStudio 3 Real-Time PCR System (Thermo Fisher Scientific) using the NEBNext Library Quant Kit for Illumina (New England BioLabs) according to the instructions of the manufacturer. The libraries were clustered and sequenced (75 bp) on a NextSeq 550 Sequencing System (Illumina) using a NextSeq 500/550 High Output Kit v2.5 (75 Cycles) (Illumina). <strong>List of samples is available in the mrna_sample_list.csv file.</strong> Myc-1 stands for a knock-out mutant of the MYC1 gene (Solyc08g005050). The line full name is MS5-4. <strong>Processed data</strong> <strong>Samples S28 to S48 </strong> Provenance: run from the snakemake_rnaseq pipeline v0.3.1 available from GitHub and Zenodo: <strong>Scaled counts:</strong> `S28_to_S48_scaled_counts.tsv<strong>`. </strong>A file with DESeq2 normalised counts wiith tab-separated values. Useful for visualisations (heatmaps, PCA) <em>NOT</em> for differential expression analysis. <strong>Raw counts:</strong> `S28_to_S48_raw_counts.tsv<strong>`. </strong>A file with the raw counts that can be used for differential expression analysis with DESeq2.
DOI: 10.5281/zenodo.3954272
title: Messenger RNA-seq data from leaves, stem trichomes, bald stems and leaf primordia from different tomato genetic backgrounds

description: <strong>RNA isolation</strong> To isolate RNA, plant tissues were flash frozen in liquid nitrogen immediately after harvesting and stored at −80°C prior to RNA extraction. Frozen pellets were grounded by using a mortar and pestle before immersion in QIAzol Lysis Reagent (Qiagen). RNA was isolated and purified into two separate fractions (&gt;200 nt and &lt;200 nt) using the miRNeasy Mini kit (Qiagen). For the &gt;200 nt RNA an on-column treatment was included using the RNase-free DNase set (Qiagen). <strong>mRNA sequencing protocol</strong> A poly-A enrichment was performed on the &gt;200 nt RNA fraction using the NEBNext Poly(A) mRNA Magnetic Isolation Module (New England BioLabs). RNA-Seq libraries were generated according to the manufacturers’ protocols using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina and NEBNext Multiplex Oligos for Illumina (Unique Dual Index Primer Pairs) (New England BioLabs). The size distribution of the libraries with indexed adapters was assessed using a 2200 TapeStation System with Agilent D1000 ScreenTapes (Agilent Technologies). The libraries were quantified on a QuantStudio 3 Real-Time PCR System (Thermo Fisher Scientific) using the NEBNext Library Quant Kit for Illumina (New England BioLabs) according to the instructions of the manufacturer. The libraries were clustered and sequenced (75 bp) on a NextSeq 550 Sequencing System (Illumina) using a NextSeq 500/550 High Output Kit v2.5 (75 Cycles) (Illumina). <strong>List of samples is available in the mrna_sample_list.csv file.</strong> Myc-1 stands for a knock-out mutant of the MYC1 gene (Solyc08g005050). The line full name is MS5-4. <strong>Processed data</strong> <strong>Samples S28 to S48 </strong> Provenance: run from the snakemake_rnaseq pipeline v0.3.1 available from GitHub and Zenodo: <strong>Scaled counts:</strong> `S28_to_S48_scaled_counts.tsv<strong>`. </strong>A file with DESeq2 normalised counts wiith tab-separated values. Useful for visualisations (heatmaps, PCA) <em>NOT</em> for differential expression analysis. <strong>Raw counts:</strong> `S28_to_S48_raw_counts.tsv<strong>`. </strong>A file with the raw counts that can be used for differential expression analysis with DESeq2.
DOI: 10.6084/m9.figshare.13385435
title: Supplementary Material for: Buying-Shopping Disorder among Women: The Role of Vulnerability to Marketing, Buying Motives, Impulsivity, and Self-Esteem

description: <b><i>Introduction:</i></b> The influence of marketing on addictive behaviours has been studied among tobacco and alcohol users. Although the fashion industry is highly influenced by marketing, research has poorly studied vulnerability to fashion marketing as a factor related to buying-shopping disorder (BSD) while considering psychological characteristics (buying motives, impulsivity, and self-esteem). <b><i>Objective:</i></b> The objective of the present work is to investigate the relationship between vulnerability to marketing and BSD. <b><i>Methods:</i></b> Women (<i>n</i> = 242) were exclusively recruited through social networking. They completed an online survey exploring the severity of BSD using the <i>Compulsive Buying Scale</i> (CBS) and the psychological factors associated with BSD (impulsivity, self-esteem, and buying motives) and an experimental task designed to investigate the intention to purchase in several situations, where marketing modalities such as price, brand, and packaging fluctuate. <b><i>Results:</i></b> Among the 242 participants in the study, 34 were identified as compulsive buyers (14%). Income level was considered, and compulsive buyers displayed a higher level of vulnerability to marketing, except for the packaging modality. High levels of positive urgency, lack of premeditation, and coping motivation were found to be significant predictors of the CBS score, but vulnerability to marketing was not. <b><i>Discussion and Conclusions:</i></b> Compulsive buyers seem to be more sensitive to marketing strategies, although vulnerability to marketing was not identified as a predictor of the severity of BSD. Given the enormous literature on the role of marketing in other addictive behaviours, further studies are needed to better understand the role of marketing in BSD to develop appropriate public health policies.
DOI: 10.6084/m9.figshare.13385435.v1
title: Supplementary Material for: Buying-Shopping Disorder among Women: The Role of Vulnerability to Marketing, Buying Motives, Impulsivity, and Self-Esteem

description: <b><i>Introduction:</i></b> The influence of marketing on addictive behaviours has been studied among tobacco and alcohol users. Although the fashion industry is highly influenced by marketing, research has poorly studied vulnerability to fashion marketing as a factor related to buying-shopping disorder (BSD) while considering psychological characteristics (buying motives, impulsivity, and self-esteem). <b><i>Objective:</i></b> The objective of the present work is to investigate the relationship between vulnerability to marketing and BSD. <b><i>Methods:</i></b> Women (<i>n</i> = 242) were exclusively recruited through social networking. They completed an online survey exploring the severity of BSD using the <i>Compulsive Buying Scale</i> (CBS) and the psychological factors associated with BSD (impulsivity, self-esteem, and buying motives) and an experimental task designed to investigate the intention to purchase in several situations, where marketing modalities such as price, brand, and packaging fluctuate. <b><i>Results:</i></b> Among the 242 participants in the study, 34 were identified as compulsive buyers (14%). Income level was considered, and compulsive buyers displayed a higher level of vulnerability to marketing, except for the packaging modality. High levels of positive urgency, lack of premeditation, and coping motivation were found to be significant predictors of the CBS score, but vulnerability to marketing was not. <b><i>Discussion and Conclusions:</i></b> Compulsive buyers seem to be more sensitive to marketing strategies, although vulnerability to marketing was not identified as a predictor of the severity of BSD. Given the enormous literature on the role of marketing in other addictive behaviours, further studies are needed to better understand the role of marketing in BSD to develop appropriate public health policies.
DOI: 10.6084/m9.figshare.12793757
title: SupplementaryTable1.xlsx

description: Supplementary Table 1 "Revised ages for key tephras in Ōrākei Basin maar core, Auckland Volcanic Field, New Zealand"
DOI: 10.17632/4246b328zs.1
title: HEPN-MNT toxin-antitoxin system: the HEPN ribonuclease is neutralized by oligoAMPylation. Songailiene et al.
DOI: 10.6084/m9.figshare.13385426
title: Dataset for "Hunting for truffles: the importance of mycophagy in the diet of wild bonobos"

description: The dataset titled "socioecol_fungi_feeding" contains the data used to run the model measuring the relation between socioecological factors and time spent feeding on fungi. The variable are z.transformed.<br>The dataset titled "deviation_from_linearity" contains the data used to run the model calculating the 'deviation from linearity index'. The variables are z.transformed.<br>
DOI: 10.6084/m9.figshare.13385426.v2
title: Dataset for "Hunting for truffles: the importance of mycophagy in the diet of wild bonobos"

description: The dataset titled "socioecol_fungi_feeding" contains the data used to run the model measuring the relation between socioecological factors and time spent feeding on fungi. The variable are z.transformed.<br>The dataset titled "deviation_from_linearity" contains the data used to run the model calculating the 'deviation from linearity index'. The variables are z.transformed.<br>
DOI: 10.17894/ucph.c803b97a-980f-45d7-886d-17b55f28af17
title: Raw_data_SemizerCuming_et_al_2020_Gene flow and reproductive success in ash Fraxinus excelsior L in the face of ash dieback restoration and conservation
DOI: 10.6084/m9.figshare.11956632.v3
title: "Habitat Selection Theory and Human Aesthetic Responses to Flowers - An Empirical Study on the Czech Population" - dataset

description: Dataset used in the paper Habitat Selection Theory and the Preference for Flowers - Is There Empirical Support?<br><br>The dataset contains preference ratings of photographs of 14 edible Czech plant species and 20 species native to African savannas. 3354 participants rated the Czech species and 743 participants rated the African species. The photographs were rated online. The survey targeted primarily Czech participants. <br>
DOI: 10.5281/zenodo.4275793
title: A Magic Angle Spinning Activated 17O DNP Raser

description: Raw data, processed spectra and the numerical integration code for the publication "A Magic Angle Spinning Activated 17O DNP Raser", DOI: 10.1021/acs.jpclett.0c03457. NMR data is in the Bruker TopSpin format. Numerical integration was performed in Matlab.
DOI: 10.5281/zenodo.4275792
title: A Magic Angle Spinning Activated 17O DNP Raser

description: Raw data, processed spectra and the numerical integration code for the publication "A Magic Angle Spinning Activated 17O DNP Raser", DOI: 10.1021/acs.jpclett.0c03457. NMR data is in the Bruker TopSpin format. Numerical integration was performed in Matlab.
DOI: 10.6084/m9.figshare.11956632.v4
title: "Habitat Selection and Human Aesthetic Responses to Flowers"

description: Dataset used in the paper Habitat Selection Theory and the Preference for Flowers - Is There Empirical Support?<br><br>The dataset contains preference ratings of photographs of 14 edible Czech plant species and 20 species native to African savannas. The participants expressed their aesthetic evaluations on rating scales (Study A - Czech plants, Study B - African plants), and using a forced-choice display paradigm (Study C - African plants). The photographs were rated online. The survey targeted primarily Czech participants. <br>
DOI: 10.5281/zenodo.4326973
title: 16S gene and ASV sequences of bacteria isolated from soil and the phyllosphere of Arabidopsis thaliana

description: Data from "Induction of antibiotic specialized metabolism by co-culturing in a collection of phyllosphere bacteria" by Qi et al. - 16S gene sequences of bacteria isolated from soil and the phyllosphere of Arabidopsis thaliana in FASTA format. - Filtered OTU (ASV) table across all samples - ASV sequences
DOI: 10.5281/zenodo.3978295
title: 16S gene and ASV sequences of bacteria isolated from soil and the phyllosphere of Arabidopsis thaliana

description: Data from "Induction of antibiotic specialized metabolism by co-culturing in a collection of phyllosphere bacteria" by Qi et al. - 16S gene sequences of bacteria isolated from soil and the phyllosphere of Arabidopsis thaliana in FASTA format. - Filtered OTU (ASV) table across all samples - ASV sequences
DOI: 10.6084/m9.figshare.13385426.v1
title: Hunting for truffles: the importance of mycophagy in the diet of wild bonobos

description: The dataset titled "socioecol_fungi_feeding" contains the data used to run the model measuring the relation between socioecological factors and time spent feeding on fungi. The variable are z.transformed.<br>The dataset titled "deviation_from_linearity" contains the data used to run the model calculating the 'deviation from linearity index'. The variables are z.transformed.<br>
DOI: 10.17632/jkfvznhrw7.1
title: Data for: Direct and indirect effects of fragmentation on seed dispersal in an agro-ecological landscape

description: A dataset to accompany the article titled "Direct and indirect effects of fragmentation on seed dispersal in an agro-ecological landscape"
DOI: 10.25442/hku.13385450
title: Behavioural Data (anon.) for Chang et al, Spatiotemporal dynamics of responses to biological motion in the human brain. Cortex.

description: Anonymised behavioural data accompanying the MEG/fMRI paper <br><br>Chang, D. H. F., Troje, N. F., Ikegaya, Y., Fujita, I., & Ban, H. (in press). Spatiotemporal dynamics of responses to biological motion in the human brain. Cortex. ​
DOI: 10.25442/hku.13385450.v1
title: Behavioural Data (anon.) for Chang et al, Spatiotemporal dynamics of responses to biological motion in the human brain. Cortex.

description: Anonymised behavioural data accompanying the MEG/fMRI paper <br><br>Chang, D. H. F., Troje, N. F., Ikegaya, Y., Fujita, I., & Ban, H. (in press). Spatiotemporal dynamics of responses to biological motion in the human brain. Cortex. ​
DOI: 10.6084/m9.figshare.13385489
title: ES-1 – Foliation Traces. Segmentation of the Caledonian orogenic infrastructure an exhumation of the Western Gneiss Region during transtensional collapse

description: ES-1 – Foliation Traces (shapefile).
DOI: 10.5281/zenodo.4309752
title: Helicos direct RNA sequencing of FPA mutants and overexpressors

description: Genes involved in disease resistance are some of the fastest evolving and most diverse components of genomes. Large numbers of nucleotide-binding, leucine-rich repeat receptor (NLR) genes are found in plant genomes and are required for disease resistance. However, NLRs can trigger autoimmunity, disrupt beneficial microbiota or reduce fitness. It is therefore crucial to understand how NLRs are controlled. Here we show that the RNA-binding protein FPA mediates widespread premature cleavage and polyadenylation of NLR transcripts, controlling their functional expression and impacting immunity. Using long-read nanopore direct RNA sequencing we resolve the complexity of NLR transcript processing and gene annotation. Our results uncover a co-transcriptional layer of NLR control with implications for understanding the regulatory and evolutionary dynamics of NLRs in the immune responses of plants.
DOI: 10.6084/m9.figshare.13385489.v1
title: ES-1 – Foliation Traces. Segmentation of the Caledonian orogenic infrastructure an exhumation of the Western Gneiss Region during transtensional collapse

description: ES-1 – Foliation Traces (shapefile).
DOI: 10.6084/m9.figshare.13385498
title: ES-2 – Geochronological Database. Segmentation of the Caledonian orogenic infrastructure an exhumation of the Western Gneiss Region during transtensional collapse

description: ES-2 – Geochronological Database (XLS).
DOI: 10.6084/m9.figshare.13385498.v1
title: ES-2 – Geochronological Database. Segmentation of the Caledonian orogenic infrastructure an exhumation of the Western Gneiss Region during transtensional collapse

description: ES-2 – Geochronological Database (XLS).
DOI: 10.6084/m9.figshare.13385501.v1
title: ES-6 – Analytical Results. Segmentation of the Caledonian orogenic infrastructure an exhumation of the Western Gneiss Region during transtensional collapse

description: ES-6 – Analytical Results (XLS).
DOI: 10.5281/zenodo.4309751
title: Helicos direct RNA sequencing of FPA mutants and overexpressors

description: Genes involved in disease resistance are some of the fastest evolving and most diverse components of genomes. Large numbers of nucleotide-binding, leucine-rich repeat receptor (NLR) genes are found in plant genomes and are required for disease resistance. However, NLRs can trigger autoimmunity, disrupt beneficial microbiota or reduce fitness. It is therefore crucial to understand how NLRs are controlled. Here we show that the RNA-binding protein FPA mediates widespread premature cleavage and polyadenylation of NLR transcripts, controlling their functional expression and impacting immunity. Using long-read nanopore direct RNA sequencing we resolve the complexity of NLR transcript processing and gene annotation. Our results uncover a co-transcriptional layer of NLR control with implications for understanding the regulatory and evolutionary dynamics of NLRs in the immune responses of plants.
DOI: 10.6084/m9.figshare.13385501
title: ES-6 – Analytical Results. Segmentation of the Caledonian orogenic infrastructure an exhumation of the Western Gneiss Region during transtensional collapse

description: ES-6 – Analytical Results (XLS).
DOI: 10.5517/ccdc.csd.cc25w407
title: CCDC 2022068: Experimental Crystal Structure Determination

description: Related Article: Yoshifumi Hashikawa, Teppei Fushino, Yasujiro Murata|2020|J.Am.Chem.Soc.|142|20572|doi:10.1021/jacs.0c10676
DOI: 10.6084/m9.figshare.13385597
title: Supplementary Material for: Two Novel Cases of Autosomal Translocations in the Horse: Warmblood Family Segregating t(4;30) and a Cloned Arabian with a de novo t(12;25)

description: We report 2 novel autosomal translocations in the horse. In Case 1, a breeding stallion with a balanced t(4p;30) had produced normal foals and those with congenital abnormalities. Of his 9 phenotypically normal offspring, 4 had normal karyotypes, 4 had balanced t(4p;30), and 1 carried an unbalanced translocation with tertiary trisomy of 4p. We argue that unbalanced forms of t(4p;30) are more tolerated and result in viable congenital abnormalities, without causing embryonic death like all other known equine autosomal translocations. In Case 2, two stallions produced by somatic cell nuclear transfer from the same donor were karyotyped because of fertility issues. A balanced translocation t(12q;25) was found in one, but not in the other clone. The findings underscore the importance of routine cytogenetic screening of breeding animals and animals produced by assisted reproductive technologies. These cases will contribute to molecular studies of translocation breakpoints and their genetic consequences in the horse.