cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25810/8pez-h060.42
title: Asian Newspaper Coverage of Climate Change or Global Warming, 2004-2023 - June 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.3886/9gmh-t932
title: Georgia Compact - Samtskhe-Javakheti Roads: Design Report
DOI: 10.3886/t3g4-9134
title: Georgia Compact - Samtskhe-Javakheti Roads: Design Report
DOI: 10.25810/558f-c477.63
title: Australian Newspaper Coverage of Climate Change or Global Warming, 2000-2023 - June 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.25810/es52-xr23.63
title: Canadian Newspaper Coverage of Climate Change or Global Warming, 2000-2023 - June 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.5519/qd.77yxzwei
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (35 records)
DOI: 10.5517/ccdc.csd.cc27xzgm
title: CCDC 2083431: Experimental Crystal Structure Determination

description: Related Article: Zhe Meng, Jun Yan, Chao Ning, Min Shi, Yin Wei|2023|Chemical Science|14|7648|doi:10.1039/D3SC01542D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29xrll
title: CCDC 2142800: Experimental Crystal Structure Determination

description: Related Article: Zhe Meng, Jun Yan, Chao Ning, Min Shi, Yin Wei|2023|Chemical Science|14|7648|doi:10.1039/D3SC01542D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c7fqs
title: CCDC 2181895: Experimental Crystal Structure Determination

description: Related Article: Arun K. Ghosh, Monika Yadav|2023|Org.Biomol.Chem.|21|5768|doi:10.1039/D3OB00653K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cyd7z
title: CCDC 2202991: Experimental Crystal Structure Determination

description: Related Article: Can Li, Zhengnan Zhou, Shengming Ma|2023|Chemical Science|14|7709|doi:10.1039/D3SC01849K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dj8rz
title: CCDC 2220181: Experimental Crystal Structure Determination

description: Related Article: Alla I. Vaskevych, Nataliia O. Savinchuk, Ruslan I. Vaskevych, Svitlana V. Shishkina, Mykhailo V. Vovk|2023|Org.Biomol.Chem.|21|5866|doi:10.1039/D3OB00834G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dms61
title: CCDC 2223543: Experimental Crystal Structure Determination

description: Related Article: Alexander J. R. Thom, Gemma F. Turner, Zachary H. Davis, Martin R. Ward, Ignas Pakamorė, Claire L. Hobday, David R. Allan, Mark R. Warren, Wai L. W. Leung, Iain D. H. Oswald, Russell E. Morris, Stephen A. Moggach, Sharon E. Ashbrook, Ross S. Forgan|2023|Chemical Science|14|7716|doi:10.1039/D3SC00904A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fl4ls
title: CCDC 2251765: Experimental Crystal Structure Determination

description: Related Article: Xue-Wei Pan, Qing-Qing Li, Lu Zhai, Jin Zhang, Wen-Long Liu, Xiao-Ming Ren|2023|Dalton Trans.|52|9472|doi:10.1039/D3DT01366A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fs6wb
title: CCDC 2257602: Experimental Crystal Structure Determination

description: Related Article: Tingzhong Huang, Ying Shao, Shengbiao Tang, Jiangtao Sun|2023|Org.Biomol.Chem.|21|5752|doi:10.1039/D3OB00893B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fs6yd
title: CCDC 2257604: Experimental Crystal Structure Determination

description: Related Article: Tingzhong Huang, Ying Shao, Shengbiao Tang, Jiangtao Sun|2023|Org.Biomol.Chem.|21|5752|doi:10.1039/D3OB00893B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gfm0k
title: CCDC 2277198: Experimental Crystal Structure Determination

description: Related Article: Maria Michela Salvatore, Marina DellaGreca, Rosario Nicoletti, Francesco Salvatore, Angela Tuzi, Gaetano De Tommaso, Artur Alves, Alla Eddine Mahamedi, Akila Berraf-Tebbal, Anna Andolfi|2021|Nat.Prod.Res.|37|424|doi:10.1080/14786419.2021.1977299
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.8159348
title: ADAR1 Links R-Loop Homeostasis to ATR Activation in Replication Stress Response

description: Unscheduled R-loops are a major source of replication stress and DNA damage. R-loop-induced replication defects are sensed and suppressed by ATR kinase, whereas it is not known whether R-loop itself is actively involved in ATR activation and, if so, how this is achieved. Here, we report that the nuclear form of RNA-editing enzyme ADAR1 promotes ATR activation and resolves genome-wide R-loops, a process that requires its double-stranded RNA-binding domains. Mechanistically, ADAR1 interacts with TOPBP1 and facilitates its loading on perturbed replication forks by enhancing the association of TOPBP1 with RAD9 of the 9-1-1 complex. When replication is inhibited, DNA-RNA hybrid competes with TOPBP1 for ADAR1 binding to promote the translocation of ADAR1 from damaged fork to R-loop region. There, ADAR1 recruits RNA helicases DHX9 and DDX21 to unwind R-loops, simultaneously allowing TOPBP1 to stimulate ATR more efficiently. Collectively, we propose that the tempo-spatially regulated assembly of ADAR1-nucleated protein complexes link R-loop clearance and ATR activation, while R-loops crosstalk with blocked replication forks by transposing ADAR1 to finetune ATR activity and safeguard the genome.
DOI: 10.5281/zenodo.8159347
title: ADAR1 Links R-Loop Homeostasis to ATR Activation in Replication Stress Response

description: Unscheduled R-loops are a major source of replication stress and DNA damage. R-loop-induced replication defects are sensed and suppressed by ATR kinase, whereas it is not known whether R-loop itself is actively involved in ATR activation and, if so, how this is achieved. Here, we report that the nuclear form of RNA-editing enzyme ADAR1 promotes ATR activation and resolves genome-wide R-loops, a process that requires its double-stranded RNA-binding domains. Mechanistically, ADAR1 interacts with TOPBP1 and facilitates its loading on perturbed replication forks by enhancing the association of TOPBP1 with RAD9 of the 9-1-1 complex. When replication is inhibited, DNA-RNA hybrid competes with TOPBP1 for ADAR1 binding to promote the translocation of ADAR1 from damaged fork to R-loop region. There, ADAR1 recruits RNA helicases DHX9 and DDX21 to unwind R-loops, simultaneously allowing TOPBP1 to stimulate ATR more efficiently. Collectively, we propose that the tempo-spatially regulated assembly of ADAR1-nucleated protein complexes link R-loop clearance and ATR activation, while R-loops crosstalk with blocked replication forks by transposing ADAR1 to finetune ATR activity and safeguard the genome.
DOI: 10.23708/mqlmlj
title: Nutritional composition of traditional cowpea-based dishes sampled in South Benin

description: Regular consumption of legumes is recommended worldwide for its environmental and health benefits. Cowpea, the most-frequently consumed legume in West African countries, is rich in nutrients and health-promoting bioactive compounds. In southern Benin, a wide variety of cowpea-based dishes are observed. These dishes can be classified into three groups: doughnuts (Ata, Ata-doco, Ataclè), mixed dishes (Abla, Atassi, Djongoli), and stews (Adowè, Abobo, Vêyi). Since the nutritional composition of these foods was poorly documented, we sampled these nine dishes from street food vendors in Cotonou for laboratory analysis to determine their nutritional composition (proximate composition, minerals, folate, thiamine, phytates, and alpha-galactosides). These data will allow to complete the food composition tables and may be useful in the case of food consumption surveys in West Africa.
DOI: 10.5281/zenodo.8157139
title: Tropical cyclone variables from CESM2 experiments

description: There are three files: control, EP and noEP. Each file contains dimensions latitude, longitude and year. Each file contains variables absolute vorticity (avor), genesis potential index (gpi), relative humidity (rh), vertical stratification (tz), potential intensity (vpot), and vertical wind shear (vws). Contact the corresponding author (kristopher.karnauskas@colorado.edu) for additional information.
DOI: 10.5281/zenodo.8157138
title: Tropical cyclone variables from CESM2 experiments

description: There are three files: control, EP and noEP. Each file contains dimensions latitude, longitude and year. Each file contains variables absolute vorticity (avor), genesis potential index (gpi), relative humidity (rh), vertical stratification (tz), potential intensity (vpot), and vertical wind shear (vws). Contact the corresponding author (kristopher.karnauskas@colorado.edu) for additional information.
DOI: 10.6084/m9.figshare.23710410
title: Supplementary tables for "<strong>The diallelic self-incompatibility system in Oleaceae is controlled by a hemizygous genomic region expressing a gibberellin pathway gene</strong> "

description: This excel file contains the supplementary material for the manuscript entitled "<strong>The diallelic self-incompatibility system in Oleaceae is controlled by a hemizygous genomic region expressing a gibberellin pathway gene</strong>" by Castric et al.
DOI: 10.6084/m9.figshare.23710410.v1
title: Supplementary tables for "<strong>The diallelic self-incompatibility system in Oleaceae is controlled by a hemizygous genomic region expressing a gibberellin pathway gene</strong> "

description: This excel file contains the supplementary material for the manuscript entitled "<strong>The diallelic self-incompatibility system in Oleaceae is controlled by a hemizygous genomic region expressing a gibberellin pathway gene</strong>" by Castric et al.
DOI: 10.5281/zenodo.6062007
title: The Upper-Airway Microbiome as a Biomarker of Asthma Exacerbations despite Inhaled Corticosteroid Treatment

description: The response to inhaled corticosteroids (ICS) in asthma is affected by the interplay of several factors. Among these, the role of the upper-airway microbiome has been scarcely investigated. We aimed to evaluate the association between the salivary, pharyngeal, and nasal microbiome with asthma exacerbations despite ICS use. Samples from 250 asthma patients from the Genomics and Metagenomics of Asthma Severity (GEMAS) study treated with ICS were analyzed. Controls/cases were defined by the absence/presence of asthma exacerbations in the past six months despite being treated with ICS. The bacterial microbiota was profiled by sequencing the V3-V4 region of the 16S rRNA gene. Differences between groups were assessed by PERMANOVA and regression models adjusted for potential confounders. A false discovery rate (FDR) of 5% was used to correct for multiple comparisons. Classification models of asthma exacerbations despite ICS treatment were built with machine learning approaches based on clinical, genetic, and microbiome data. In nasal and saliva samples, cases had lower bacterial diversity (Richness, Shannon, and Faith indexes) than controls (0.007≤p≤0.037). Asthma exacerbations accounted for 8-9% of the interindividual variation of the salivary and nasal microbiomes (0.003≤p≤0.046). Three, four, and eleven bacterial genera from the salivary, pharyngeal, and nasal microbiomes were differentially abundant between groups (4.09x10<sup>-12</sup>≤FDR≤0.047). Integrating clinical, genetic, and microbiome data showed good discrimination for the development of asthma exacerbations despite ICS use (AUC<sub>training</sub>:0.82 and AUC<sub>validation</sub>:0.77). The diversity and composition of the upper-airway microbiome are associated with asthma exacerbations despite ICS treatment. The salivary microbiome has a potential application as a biomarker of asthma exacerbations despite ICS use. The summary results of the association between bacterial genera and asthma exacerbations despite ICS use are published in this repository. Analyses were conducted using the DESeq2 package adjusting for potential confounders (see more details in the manuscript). The submitted summary tables contains the following columns: Kingdom: Taxonomic classification at Kingdom level Phylum: Taxonomic classification at Phylum level Class: Taxonomic classification at Class level Order: Taxonomic classification at Order level Family: Taxonomic classification at Family level Genus: Taxonomic classification at Genus level log2FC: log<sub>2</sub>(fold-change). Positive values indicate higher abundance in cases and negative values in controls SE: standard error of log<sub>2</sub>(fold-change) P.Value: p-value of the regression model FDR: adjusted p-value by false discovery rate (Benjamin-Hochberg method)
DOI: 10.5281/zenodo.6062006
title: The Upper-Airway Microbiome as a Biomarker of Asthma Exacerbations despite Inhaled Corticosteroid Treatment

description: The response to inhaled corticosteroids (ICS) in asthma is affected by the interplay of several factors. Among these, the role of the upper-airway microbiome has been scarcely investigated. We aimed to evaluate the association between the salivary, pharyngeal, and nasal microbiome with asthma exacerbations despite ICS use. Samples from 250 asthma patients from the Genomics and Metagenomics of Asthma Severity (GEMAS) study treated with ICS were analyzed. Controls/cases were defined by the absence/presence of asthma exacerbations in the past six months despite being treated with ICS. The bacterial microbiota was profiled by sequencing the V3-V4 region of the 16S rRNA gene. Differences between groups were assessed by PERMANOVA and regression models adjusted for potential confounders. A false discovery rate (FDR) of 5% was used to correct for multiple comparisons. Classification models of asthma exacerbations despite ICS treatment were built with machine learning approaches based on clinical, genetic, and microbiome data. In nasal and saliva samples, cases had lower bacterial diversity (Richness, Shannon, and Faith indexes) than controls (0.007≤p≤0.037). Asthma exacerbations accounted for 8-9% of the interindividual variation of the salivary and nasal microbiomes (0.003≤p≤0.046). Three, four, and eleven bacterial genera from the salivary, pharyngeal, and nasal microbiomes were differentially abundant between groups (4.09x10<sup>-12</sup>≤FDR≤0.047). Integrating clinical, genetic, and microbiome data showed good discrimination for the development of asthma exacerbations despite ICS use (AUC<sub>training</sub>:0.82 and AUC<sub>validation</sub>:0.77). The diversity and composition of the upper-airway microbiome are associated with asthma exacerbations despite ICS treatment. The salivary microbiome has a potential application as a biomarker of asthma exacerbations despite ICS use. The summary results of the association between bacterial genera and asthma exacerbations despite ICS use are published in this repository. Analyses were conducted using the DESeq2 package adjusting for potential confounders (see more details in the manuscript). The submitted summary tables contains the following columns: Kingdom: Taxonomic classification at Kingdom level Phylum: Taxonomic classification at Phylum level Class: Taxonomic classification at Class level Order: Taxonomic classification at Order level Family: Taxonomic classification at Family level Genus: Taxonomic classification at Genus level log2FC: log<sub>2</sub>(fold-change). Positive values indicate higher abundance in cases and negative values in controls SE: standard error of log<sub>2</sub>(fold-change) P.Value: p-value of the regression model FDR: adjusted p-value by false discovery rate (Benjamin-Hochberg method)
DOI: 10.5281/zenodo.8164708
title: Dataset for the Tyrosine-protein kinase SYK antibody screening study

description: This project contains the following underlying data included in a study aiming at characterizing antibodies for Tyrosine-protein kinase SYK. The study is available on Zenodo (https://doi.org/10.5281/zenodo.6566940).
DOI: 10.26036/cnp0004041
title: The genome of Dalbergia sissoo

description: This project provide the Hi-C sequencing data, RNA sequencing data and the assembly result of Dalbergia sissoo
DOI: 10.25810/3hvn-ef66.33
title: Danish Newspaper Coverage of Climate Change or Global Warming, 2004-2023 - June 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.23710353
title: Datebase for suitability of bird breeding

description: Original survey data on bird nest density and influencing factors in Urban green space.
DOI: 10.6084/m9.figshare.23710353.v1
title: Datebase for suitability of bird breeding

description: Original survey data on bird nest density and influencing factors in Urban green space.
DOI: 10.5519/qd.p67fe3pr
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (17 records)
DOI: 10.6073/pasta/29e20d5ec60e2132b3e5ae7ae31691e8
title: Fungal Diversity in Sarracenia Purpurea Pitchers at Harvard Forest 2009-2010

description: The carnivorous pitcher plant Sarracenia purpurea is widely distributed in the United States and Canada, and is host to a variety of symbiotic organisms, including symbiotic fungi. Culturing of S. purpurea pitcher contents in its native range uncovers diverse single-celled (yeast) communities; these yeast communities are dominated by the ascomycete yeast Candida pseudoglaebosa. We set out to understand how fungal diversity in S. purpurea pitchers changes over space and time, and how C. pseudoglaebosa might influence this diversity. In the summer of 2009, we assayed S. purpurea pitcher water fungal succession in Tom Swamp in Harvard Forest. We sequenced fungal DNA barcodes from 43 pitchers at different times throughout the growing season, and found that C. pseudoglaebosa has a strong impact on fungal diversity. It generally appears in pitchers early in succession, and once it arrives, it often becomes dominant quickly and decreases community evenness. We also identified two other culturable yeasts, Rhodotorula babjevae and Moesziomyces aphidis, which are common but not dominant in pitchers. In laboratory experiments, C. pseudoglaebosa outcompetes these two yeasts, but only if it is inoculated in large numbers, suggesting that C. pseudoglaebosa’s dominance is a consequence of early arrival during pitcher succession. The following summer (2010), we collected water from pitchers at five distant sites in the United States and Canada, and assayed fungal community diversity and C. pseudoglaebosa genetic diversity. We sampled pitcher plants from Tom Swamp in Harvard Forest, plus four other sites in British Columbia, Newfoundland, Georgia, and Florida (Floridian plants were Sarracenia rosea, a close relative of S. purpurea). Fungal communities tended to be structured geographically, with close communities resembling each other more than distant communities. In contrast, C. pseudoglaebosa exhibited three populations: one well-mixed population including isolates from Harvard Forest, Georgia, and Newfoundland (East Coast), one from Florida, and one from British Columbia. Taken together, these results suggest that C. pseudoglaebosa dispersal is not limited along the East Coast, but that there may be other ecological factors preventing mixing between Florida and the East Coast population.
DOI: 10.34740/kaggle/dsv/6162250
title: Cristiano Ronaldo | All Club Goals