cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5032466.v1
title: Microstructural controls on the pressure-dependent permeability of Whitby mudstone

description: A CSV file containing all experimental conditions and a tabulation of results
DOI: 10.6084/m9.figshare.5032481.v2
title: Anthropogenic noise pollution disrupts the structure and dynamics of fish shoals

description: All variables for the measures analysed.
DOI: 10.6084/m9.figshare.5032481.v1
title: Anthropogenic noise pollution disrupts the structure and dynamics of fish shoals

description: All variables for the measures analysed.
DOI: 10.6084/m9.figshare.5032334
title: Data for: The performance of the cleaner wrasse Labroides dimidiatus in a reversal learning task varies across experimental setups

description: Data, metadata and analysis script for "The performance of the cleaner wrasse Labroides dimidiatus in a reversal learning task varies across experimental setups" by S. Gingins, F. Marcadier, S. Wismer, O. Krattinger, F. Quattrini, R. Bshary & S.A. Binning.
DOI: 10.6084/m9.figshare.5032325
title: Table S2 from Glacial survival of trophically linked boreal species in northern Europe

description: Geographic coordinates of occurrence data used for the two host tree species of <i>G. intemredia, Prunus padus</i> and <i>Sorbus aucuparia</i>.
DOI: 10.6084/m9.figshare.5032325.v1
title: Table S2 from Glacial survival of trophically linked boreal species in northern Europe

description: Geographic coordinates of occurrence data used for the two host tree species of <i>G. intemredia, Prunus padus</i> and <i>Sorbus aucuparia</i>.
DOI: 10.6084/m9.figshare.5032343.v1
title: New draft item111

description: keywords
DOI: 10.6084/m9.figshare.5032334.v1
title: Data for: The performance of the cleaner wrasse Labroides dimidiatus in a reversal learning task varies across experimental setups

description: Data, metadata and analysis script for "The performance of the cleaner wrasse Labroides dimidiatus in a reversal learning task varies across experimental setups" by S. Gingins, F. Marcadier, S. Wismer, O. Krattinger, F. Quattrini, R. Bshary & S.A. Binning.
DOI: 10.6084/m9.figshare.5032334.v2
title: Data for: The performance of the cleaner wrasse Labroides dimidiatus in a reversal learning task varies across experimental setups

description: Data, metadata and analysis script for "The performance of the cleaner wrasse Labroides dimidiatus in a reversal learning task varies across experimental setups" by S. Gingins, F. Marcadier, S. Wismer, O. Krattinger, F. Quattrini, R. Bshary & S.A. Binning.
DOI: 10.6084/m9.figshare.5032334.v3
title: Data for: The performance of the cleaner wrasse Labroides dimidiatus in a reversal learning task varies across experimental setups

description: Data, metadata and analysis script for "The performance of the cleaner wrasse Labroides dimidiatus in a reversal learning task varies across experimental setups" by S. Gingins, F. Marcadier, S. Wismer, O. Krattinger, F. Quattrini, R. Bshary & S.A. Binning.
DOI: 10.6084/m9.figshare.5032295
title: Supporting data from Foraging intention affects whether willow tits call to attract members of mixed-species flocks

description: Data sheets of patch discovery and playback experiments
DOI: 10.6084/m9.figshare.5032295.v1
title: Supporting data from Foraging intention affects whether willow tits call to attract members of mixed-species flocks

description: Data sheets of patch discovery and playback experiments
DOI: 10.6084/m9.figshare.5032274
title: papfigs7RR.m from On the formation of fold-type oscillation marks in the continuous casting of steel

description: Matlab file to generate the figures
DOI: 10.6084/m9.figshare.5032277
title: plotepstex.m from On the formation of fold-type oscillation marks in the continuous casting of steel

description: Matlab file called by papfigs7RR.m
DOI: 10.6084/m9.figshare.5032280
title: laprint.m from On the formation of fold-type oscillation marks in the continuous casting of steel

description: Matlab file called by papfigs7RR.m
DOI: 10.6084/m9.figshare.5032283
title: legend2latex.m from On the formation of fold-type oscillation marks in the continuous casting of steel

description: Matlab file called by papfigs7RR.m
DOI: 10.6084/m9.figshare.5032274.v1
title: papfigs7RR.m from On the formation of fold-type oscillation marks in the continuous casting of steel

description: Matlab file to generate the figures
DOI: 10.6084/m9.figshare.5032280.v1
title: laprint.m from On the formation of fold-type oscillation marks in the continuous casting of steel

description: Matlab file called by papfigs7RR.m
DOI: 10.6084/m9.figshare.5032277.v1
title: plotepstex.m from On the formation of fold-type oscillation marks in the continuous casting of steel

description: Matlab file called by papfigs7RR.m
DOI: 10.6084/m9.figshare.5032262
title: Reduced access to cleaner fish impacts negatively the physiological state of two resident reef fishes

description: 1.Many “client” coral reef fishes have their ectoparasites removed by the “cleaner” wrasse<i>Labroides dimidiatus </i>in mutualistic interactions<i>.</i>Clients regularly receiving cleaning services reportedly benefit from increased growth and cognitive performance, but the underlying physiological changes that covary with such benefits are unknown.
DOI: 10.6084/m9.figshare.5032283.v1
title: legend2latex.m from On the formation of fold-type oscillation marks in the continuous casting of steel

description: Matlab file called by papfigs7RR.m
DOI: 10.6084/m9.figshare.5032268
title: Hill5.txt from On the formation of fold-type oscillation marks in the continuous casting of steel

description: Data file with data from Hill et al. (1999)
DOI: 10.6084/m9.figshare.5032256
title: <i>CD59</i> polymorphisms are associated with gene expression and different sexual susceptibility to pemphigus foliaceus

description: Pemphigus foliaceus (PF) is an autoimmune disease, endemic in Brazilian rural areas, characterized by acantholysis and accompanied by complement activation, with generalized or localized distribution of painful epidermal blisters. CD59 is an essential complement regulator, inhibiting formation of the membrane attack complex, and mediating signal transduction and activation of T lymphocytes. <i>CD59</i> has different transcripts by alternative splicing, of which only two are widely expressed, suggesting the presence of regulatory sites in their noncoding regions. To date, there is no association study with polymorphisms in <i>CD59</i> noncoding regions and susceptibility to autoimmune diseases. In this study, we aimed to evaluate if <i>CD59</i> polymorphisms have a possible regulatory effect on gene expression and susceptibility to PF. Six noncoding polymorphisms were haplotyped in 157 patients and 215 controls by sequence-specific PCR, and CD59 mRNA levels were measured in 82 subjects, by qPCR. The <i>rs861256</i>-allele-<i>G</i> (<i>rs861256</i>*<i>G</i>) was associated with increased mRNA expression (<i>p</i> = .0113) and PF susceptibility in women (OR = 4.11, <i>p</i> = .0001), which were also more prone to develop generalized lesions (OR = 4.3, <i>p</i> = .009) and to resist disease remission (OR = 3.69, <i>p</i> = .045). Associations were also observed for <i>rs831625</i>*<i>G</i> (OR = 3.1, <i>p</i> = .007) and <i>rs704697</i>*<i>A</i> (OR = 3.4, <i>p</i> = .006) in Euro-Brazilian women, and for <i>rs704701</i>*<i>C</i> (OR = 2.33, <i>p</i> = .037) in Afro-Brazilians. These alleles constitute the <i>GGCCAA</i> haplotype, which also increases PF susceptibility (OR = 4.9, <i>p</i> = .045) and marks higher mRNA expression (<i>p</i> = .0025). In conclusion, higher <i>CD59</i> transcriptional levels may be related with PF susceptibility (especially in women), probably due to the effect of genetic polymorphism and to the CD59 role in T cell signal transduction.
DOI: 10.6084/m9.figshare.5032262.v1
title: Reduced access to cleaner fish impacts negatively the physiological state of two resident reef fishes

description: 1.Many “client” coral reef fishes have their ectoparasites removed by the “cleaner” wrasse<i>Labroides dimidiatus </i>in mutualistic interactions<i>.</i>Clients regularly receiving cleaning services reportedly benefit from increased growth and cognitive performance, but the underlying physiological changes that covary with such benefits are unknown.
DOI: 10.6084/m9.figshare.5032256.v1
title: <i>CD59</i> polymorphisms are associated with gene expression and different sexual susceptibility to pemphigus foliaceus

description: Pemphigus foliaceus (PF) is an autoimmune disease, endemic in Brazilian rural areas, characterized by acantholysis and accompanied by complement activation, with generalized or localized distribution of painful epidermal blisters. CD59 is an essential complement regulator, inhibiting formation of the membrane attack complex, and mediating signal transduction and activation of T lymphocytes. <i>CD59</i> has different transcripts by alternative splicing, of which only two are widely expressed, suggesting the presence of regulatory sites in their noncoding regions. To date, there is no association study with polymorphisms in <i>CD59</i> noncoding regions and susceptibility to autoimmune diseases. In this study, we aimed to evaluate if <i>CD59</i> polymorphisms have a possible regulatory effect on gene expression and susceptibility to PF. Six noncoding polymorphisms were haplotyped in 157 patients and 215 controls by sequence-specific PCR, and CD59 mRNA levels were measured in 82 subjects, by qPCR. The <i>rs861256</i>-allele-<i>G</i> (<i>rs861256</i>*<i>G</i>) was associated with increased mRNA expression (<i>p</i> = .0113) and PF susceptibility in women (OR = 4.11, <i>p</i> = .0001), which were also more prone to develop generalized lesions (OR = 4.3, <i>p</i> = .009) and to resist disease remission (OR = 3.69, <i>p</i> = .045). Associations were also observed for <i>rs831625</i>*<i>G</i> (OR = 3.1, <i>p</i> = .007) and <i>rs704697</i>*<i>A</i> (OR = 3.4, <i>p</i> = .006) in Euro-Brazilian women, and for <i>rs704701</i>*<i>C</i> (OR = 2.33, <i>p</i> = .037) in Afro-Brazilians. These alleles constitute the <i>GGCCAA</i> haplotype, which also increases PF susceptibility (OR = 4.9, <i>p</i> = .045) and marks higher mRNA expression (<i>p</i> = .0025). In conclusion, higher <i>CD59</i> transcriptional levels may be related with PF susceptibility (especially in women), probably due to the effect of genetic polymorphism and to the CD59 role in T cell signal transduction.
DOI: 10.6084/m9.figshare.5032268.v1
title: Hill5.txt from On the formation of fold-type oscillation marks in the continuous casting of steel

description: Data file with data from Hill et al. (1999)
DOI: 10.6084/m9.figshare.5032226
title: Annotation for ballan wrasse (Labrus bergylta)

description: A two-pass iteration with MAKER version 2.31.8 was performed on the final genome assembly as described at https://github.com/sujaikumar/assemblage/blob/master/README-annotation.md and in Campell et al with some minor modifications. First, three ab initio gene finders were trained, SNAP version 20131129on the genes found by CEGMA version 2.4.010312, GeneMark-ES version 2.3e on the genome assembly itself, and AUGUSTUS version 3.0.2 trained with the Actinopterygii gene set from BUSCO v1.1b by using the –long option for BUSCO. SwissProt/UniProtKB (release 2016_01), and used as input to MAKER together with two sets of transcriptomes (one assembled with Trinity, and one based on 454 reads), the repeat library and the trained gene finders for the first pass of training. SNAP and AUGUSTUS were then retrained on the GFF output of MAKER, and a second pass was performed. Gene ontologies and gene families and domains were applied to the protein output of the second pass by running InterProScan version 5.4-47, and putative gene names were identified by BLAST against SwissProt/UniProtKB. Gene models with AED of more than 0.5 were removed, resulting in a final set of gene models numbering 31,050.<br>The files with aed_0.5 in their names, are the filtered. The others are the whole annotation.<br>
DOI: 10.6084/m9.figshare.5032193
title: Taxonomic study of the plants to be found in the only <i>herbarium</i> of Paolo Boccone (1633–1704) at present existing in Italy

description: The aim of this paper is the study of the pre-Linnaean <i>herbarium</i> of Paolo Boccone, a 17th century Sicilian botanist. The volume of <i>exsiccata</i> (dated 1680) is currently kept in the Civica and A. Ursino Recupero joint Libraries of Catania (shelfmark 1.31.241). The collection was previously unknown and found by chance in 2002 as a result of reorganisation. <i>Herbaria</i> produced by Boccone are to be found in many European cities (Lyons, Paris, Innsbruck, Vienna, Wroclaw, Leiden, Oxford). The one that is the object of this study is, at present, the only one in Italy that exists and that can be consulted. The volume examined consists of 138 pages, with 1–5 specimens on each sheet. The material in the <i>herbarium</i> comprises phanerogams (366 angiosperms and 1 gymnosperm), along with a small number of cryptogams (6 pteridophytes, 1 briophyta and 2 algae). The samples are in a good state of preservation and it has been possible to identify most of them. Most of the <i>taxa</i> are made up of high altitude Alpine and Apennine plants; some entities have a distribution frequency on the Italian territory which goes from rare to very rare and need to be safeguarded because – some more, some less – they are seriously threatened.
DOI: 10.6084/m9.figshare.5032226.v1
title: Annotation for ballan wrasse (Labrus bergylta)

description: p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 11.0px Menlo} span.s1 {font-variant-ligatures: no-common-ligatures} span.Apple-tab-span {white-space:pre} A two-pass iteration with MAKER version 2.31.8 was performed on the final genome assembly as described at https://github.com/sujaikumar/assemblage/blob/master/README-annotation.md and in Campell et al with some minor modifications. First, three ab initio gene finders were trained, SNAP version 20131129on the genes found by CEGMA version 2.4.010312, GeneMark-ES version 2.3e on the genome assembly itself, and AUGUSTUS version 3.0.2 trained with the Actinopterygii gene set from BUSCO v1.1b by using the –long option for BUSCO. SwissProt/UniProtKB (release 2016_01), and used as input to MAKER together with two sets of transcriptomes (one assembled with Trinity, and one based on 454 reads), the repeat library and the trained gene finders for the first pass of training. SNAP and AUGUSTUS were then retrained on the GFF output of MAKER, and a second pass was performed. Gene ontologies and gene families and domains were applied to the protein output of the second pass by running InterProScan version 5.4-47, and putative gene names were identified by BLAST against SwissProt/UniProtKB. Gene models with AED of more than 0.5 were removed, resulting in a final set of gene models numbering 31,050.<br><br>The files with aed_0.5 in their names, are the filtered. The others are the whole annotation.
DOI: 10.6084/m9.figshare.5032193.v1
title: Taxonomic study of the plants to be found in the only <i>herbarium</i> of Paolo Boccone (1633–1704) at present existing in Italy

description: The aim of this paper is the study of the pre-Linnaean <i>herbarium</i> of Paolo Boccone, a 17th century Sicilian botanist. The volume of <i>exsiccata</i> (dated 1680) is currently kept in the Civica and A. Ursino Recupero joint Libraries of Catania (shelfmark 1.31.241). The collection was previously unknown and found by chance in 2002 as a result of reorganisation. <i>Herbaria</i> produced by Boccone are to be found in many European cities (Lyons, Paris, Innsbruck, Vienna, Wroclaw, Leiden, Oxford). The one that is the object of this study is, at present, the only one in Italy that exists and that can be consulted. The volume examined consists of 138 pages, with 1–5 specimens on each sheet. The material in the <i>herbarium</i> comprises phanerogams (366 angiosperms and 1 gymnosperm), along with a small number of cryptogams (6 pteridophytes, 1 briophyta and 2 algae). The samples are in a good state of preservation and it has been possible to identify most of them. Most of the <i>taxa</i> are made up of high altitude Alpine and Apennine plants; some entities have a distribution frequency on the Italian territory which goes from rare to very rare and need to be safeguarded because – some more, some less – they are seriously threatened.
DOI: 10.17632/mmbmx4fyy5.5
title: Data for: Movie watching during dialysis sessions reduces anxiety and depression and improves quality on life: a randomized clinical trial

description: Dados of the article "Movie watching during dialysis sessions reduces anxiety and depression and improves quality on life: a randomized clinical trial"
DOI: 10.6084/m9.figshare.5031530
title: Alpine metamorphism of low-grade schists from the Slavonian Mountains (Croatia): new P-T and geochronological constraints

description: Low-grade schists from the Slavonian Mountains (Tisia Mega-Unit, Mt Papuk, Croatia), previously assigned to Precambrian to Lower Palaeozoic metamorphism, have been subjected to geochemical investigations, P-T modelling, and <i>in situ</i> age dating of monazite. The studied fine-grained metasediments consist of chlorite (5–15 vol.%), K white-mica (40–55 vol.%), quartz (20–35 vol.%), feldspar (albite 15–20 vol.%), opaques (&lt;2 vol.%), and accessory minerals. According to their whole-rock geochemistry, the detritus of the former sediments came from upper crustal felsic rocks as they occur, for instance, at Mt Papuk. The schists show a complex microtectonic fabric, including well-developed schistosity systems. P-T pseudosections in the system MnNCKFMASHTO, constructed for typical schists of the study area, resulted in peak P-T conditions of 445–465 °C and 4.6–6.0 kbar for a sample from Kutjevo (eastern part of the study area) and 450–460 °C and 5.2–6.0 for a Vranovo sample (western part). Electron microprobe (EMP) dating of monazite in the schists gave a weighted average age of 109.0 ± 13.1 Ma (2<i>σ</i>) eventually with three subgroups of ages at 225 ± 63 (two analyses), 114 ± 24 and 83 ± 22 Ma. We conclude that the metamorphism of the studied schists at depths of c. 20 km is due to an Alpine collisional event.
DOI: 10.6084/m9.figshare.5031530.v1
title: Alpine metamorphism of low-grade schists from the Slavonian Mountains (Croatia): new P-T and geochronological constraints

description: Low-grade schists from the Slavonian Mountains (Tisia Mega-Unit, Mt Papuk, Croatia), previously assigned to Precambrian to Lower Palaeozoic metamorphism, have been subjected to geochemical investigations, P-T modelling, and <i>in situ</i> age dating of monazite. The studied fine-grained metasediments consist of chlorite (5–15 vol.%), K white-mica (40–55 vol.%), quartz (20–35 vol.%), feldspar (albite 15–20 vol.%), opaques (&lt;2 vol.%), and accessory minerals. According to their whole-rock geochemistry, the detritus of the former sediments came from upper crustal felsic rocks as they occur, for instance, at Mt Papuk. The schists show a complex microtectonic fabric, including well-developed schistosity systems. P-T pseudosections in the system MnNCKFMASHTO, constructed for typical schists of the study area, resulted in peak P-T conditions of 445–465 °C and 4.6–6.0 kbar for a sample from Kutjevo (eastern part of the study area) and 450–460 °C and 5.2–6.0 for a Vranovo sample (western part). Electron microprobe (EMP) dating of monazite in the schists gave a weighted average age of 109.0 ± 13.1 Ma (2<i>σ</i>) eventually with three subgroups of ages at 225 ± 63 (two analyses), 114 ± 24 and 83 ± 22 Ma. We conclude that the metamorphism of the studied schists at depths of c. 20 km is due to an Alpine collisional event.
DOI: 10.6084/m9.figshare.5031521
title: Guidance to develop individual dose recommendations for patients on chronic hemodialysis

description: <b>Introduction</b>: In addition to tailored clinical trials in patients on chronic hemodialysis (HD) during drug development, clinician-initiated post-marketing studies and case reports on individual pharmacokinetic (PK) assessments provide an important source of information about drug dialysability and individualized dose recommendations in this vulnerable population. <b>Areas covered</b>: First, factors that may alter drug exposure in HD patients are explained. Second, available regulatory and methodological guidelines for PK assessments in this population are summarized. Third, a 4-step approach is proposed to develop individual dose recommendations for HD patients receiving drugs without data from a PK study: (1) literature search, (2) model-based dosage decisions, (3) validation and refinement through concentration monitoring, and (4) publication of relevant observations. Fourth, clinician-initiated PK assessments and case reports to evaluate and individualize use of drugs in HD patients are reviewed, and recommendations to enhance their quality are discussed. <b>Expert commentary</b>: Guidance on collecting and reporting PK information in individual HD patients is warranted to ensure completeness and consistency of such PK studies. A checklist and template for easy-to-implement PK calculations and pharmacometric modeling is provided to facilitate evaluation and individualization of dosing strategies in these patients.
DOI: 10.6084/m9.figshare.5031521.v1
title: Guidance to develop individual dose recommendations for patients on chronic hemodialysis

description: <b>Introduction</b>: In addition to tailored clinical trials in patients on chronic hemodialysis (HD) during drug development, clinician-initiated post-marketing studies and case reports on individual pharmacokinetic (PK) assessments provide an important source of information about drug dialysability and individualized dose recommendations in this vulnerable population. <b>Areas covered</b>: First, factors that may alter drug exposure in HD patients are explained. Second, available regulatory and methodological guidelines for PK assessments in this population are summarized. Third, a 4-step approach is proposed to develop individual dose recommendations for HD patients receiving drugs without data from a PK study: (1) literature search, (2) model-based dosage decisions, (3) validation and refinement through concentration monitoring, and (4) publication of relevant observations. Fourth, clinician-initiated PK assessments and case reports to evaluate and individualize use of drugs in HD patients are reviewed, and recommendations to enhance their quality are discussed. <b>Expert commentary</b>: Guidance on collecting and reporting PK information in individual HD patients is warranted to ensure completeness and consistency of such PK studies. A checklist and template for easy-to-implement PK calculations and pharmacometric modeling is provided to facilitate evaluation and individualization of dosing strategies in these patients.
DOI: 10.15161/oar.it/30665
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.