cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.r98jq6j/1
title: Readme

description: Variable definitions for the datasets that accompany: Mozdzer & Caplan (2018) Complementary responses of morphology and physiology enhance stand scale production of a model invasive species under elevated CO2 and nitrogen.
DOI: 10.5061/dryad.r98jq6j/2
title: Light curve data

description: Characteristic measurements and fitted parameters from photosynthetic light response curves
DOI: 10.5061/dryad.r98jq6j/3
title: Culm height data

description: Heights of all Phragmites australis culms (aboveground stems) in open-top chambers during censuses
DOI: 10.5061/dryad.sd5hv94/1
title: quantitative_song_traits

description: Individual-specific estimates of quantitative song traits, number of MHC alleles, and the presence of particular MHC alleles. This dataset was used to test if quantitative song traits reflect MHC allelic diversity or the presence of particular alleles
DOI: 10.5061/dryad.sd5hv94/2
title: qualitative_song_traits

description: Individual-specific estimates of syllable content (presence of particular syllables), and the number of MHC alleles. This dataset was used to test if qualitative song traits reflect MHC allelic diversity. To test if the presence of particular syllables are associated with the presence of particular alleles, this dataset should be merged with "quantitative_song_traits.xlsx" based on ring numbers
DOI: 10.5061/dryad.sd5hv94/3
title: genetic_distance

description: Genetic distance of individuals (with information on qualitative song traits) based on their MHC sequences
DOI: 10.5061/dryad.sd5hv94/4
title: song_distance

description: Dissimilarity in song content among males based on the frequency of use of particular syllables
DOI: 10.5061/dryad.sg1pn/1
title: Appendices for Yusah et al (2018)

description: R code for analysis of within and between tree co-occurrence of ant species and data to be used with this analysis.
DOI: 10.5061/dryad.sm5h0/3
title: Supplemental Data for Paraben Metabolite Characterization 2.22.18

description: Cell culture methods, proliferation assay data for dose response curves, and 2D interaction diagrams
DOI: 10.5061/dryad.t5m5662/1
title: Bird mixed-species flock

description: The first sheet contains the data description and the others  provide data for each analysis
DOI: 10.5061/dryad.tn60810/1
title: Table S4

description: OTU Table from 16S rRNA sequencing: raw numbers
DOI: 10.5061/dryad.vr61ks2/1
title: Three tab-delimited matrices of genetic distances of brown bears, method validation and demonstrative data

description: The data package consist of a zip-file, containing three tab-delimited matrices of genetic distances. The matrices are described in the supplementary data file S4, found in the supplemental information tab in the online version of the article and as README file associated with the data package: 1."IBD_corrected_gen_distance_shuffled_in_50km.txt" = genetic distances corrected for IBD from the simulation fo small scale free dispersion; 2."IBD_corrected_genetic_distance_empirical.txt" = empirical matrix of genetic distances corrected for IBD; 3."IBD_corrected_genetic_distance_resampled.txt" = genetic distances corrected for IBD and randomised over study area; scenario of globally even IBD.
DOI: 10.5061/dryad.061v7/1
title: Martin et al. - Quantifying heat loss in mange infected wombats

description: Heat loss (W/m2) from body regions affected by hair loss in mange infected wombats.
DOI: 10.5061/dryad.2044d/1
title: Supplemental Data
DOI: 10.5061/dryad.28sm8.2
title: Data from: Olfaction written in bone: cribriform plate size parallels olfactory receptor gene repertoires in Mammalia
DOI: 10.5061/dryad.28sm8.2/7.2
title: Key resource table, Excel format

description: Key resource table for sample specimens, CT scanning machines and facilities, and digital imaging software.
DOI: 10.5061/dryad.4368h/8
title: mBRAVE_DS-PBBC4

description: mBRAVE output for data set DS-PBBC4.
DOI: 10.5061/dryad.6545f86/1
title: Field and laboratory data on Apodemus semotus

description: This Excel file contains two worksheets, 'field data' and 'lab data'. The 'field data' worksheet has the data from the field experiment, including the body mass, parasite intensity (i.e. faecal egg count), seed consumption (i.e. stable carbon isotope value), sex, ivermectin treatment, offspring number and offspring quality (i.e. mean body mass of the offspring) of Apodemus semotus. The 'lab data' worksheet has the data from the laboratory experiment, including ivermectin treatment, sex, parasite intensity (i.e. faecal egg count), energy consumption and three immune metrics (i.e. white blood cell count, percent granulocyte count and percent lymphocyte count of Apodemus semotus.
DOI: 10.5061/dryad.6vd5d71/1
title: Chick individual data

description: Database with chick individual data (tarsus length, initial body mass, body mass change)
DOI: 10.5061/dryad.6vd5d71/2
title: Behavioral variables (parents present)

description: Database with behavioral data when parents are present (feeding rates, prey size, begging intensity during feeding bouts, prey-testings). Note that there are 4 data per nest correponding to the behavior of the male and the female parent and UVreduced and non-UV reduced chicks.
DOI: 10.5061/dryad.745q5/1
title: Stereo processed 3 ms-1

description: Vector fields of the wake of pied flycatchers flying in a wind tunnel. Dat files containing columns of x, y, z coordinates in mm and the corresponding velocity components (Vx, Vy, Vz in ms-1). The coordinate system is right handed with x is horizontally to the right, y is vertically upwards and z is out of the xy-plane.
DOI: 10.5061/dryad.745q5/2
title: Stereo processed 1 ms-1

description: Vector fields of the wake of pied flycatchers flying in a wind tunnel. Dat files containing columns of x, y, z coordinates in mm and the corresponding velocity components (Vx, Vy, Vz in ms-1). The coordinate system is right handed with x is horizontally to the right, y is vertically upwards and z is out of the xy-plane.
DOI: 10.5061/dryad.745q5/3
title: Stereo processed 5 ms-1

description: Vector fields of the wake of pied flycatchers flying in a wind tunnel. Dat files containing columns of x, y, z coordinates in mm and the corresponding velocity components (Vx, Vy, Vz in ms-1). The coordinate system is right handed with x is horizontally to the right, y is vertically upwards and z is out of the xy-plane.
DOI: 10.5061/dryad.745q5/4
title: Stereo processed 7 ms-1

description: Vector fields of the wake of pied flycatchers flying in a wind tunnel. Dat files containing columns of x, y, z coordinates in mm and the corresponding velocity components (Vx, Vy, Vz in ms-1). The coordinate system is right handed with x is horizontally to the right, y is vertically upwards and z is out of the xy-plane.
DOI: 10.5061/dryad.745q5/5
title: Stereo processed 9 ms-1

description: Vector fields of the wake of pied flycatchers flying in a wind tunnel. Dat files containing columns of x, y, z coordinates in mm and the corresponding velocity components (Vx, Vy, Vz in ms-1). The coordinate system is right handed with x is horizontally to the right, y is vertically upwards and z is out of the xy-plane.
DOI: 10.5061/dryad.745q5/6
title: Tomo processed 5 ms-1

description: Vector fields of the wake of pied flycatchers flying in a wind tunnel. Dat files containing columns of x, y, z coordinates in mm and the corresponding velocity components (Vx, Vy, Vz in ms-1). The coordinate system is right handed with x is horizontally to the right, y is vertically upwards and z is out of the xy-plane.
DOI: 10.5061/dryad.7v1hq/1
title: data dryad

description: data on paternity success of stored vs fresh sperm in the guppy (an internally fertilising fish with prolonged sperm storage). Stored sperm were from a previous reproductive cycle (i.e. female produced one brood with 'stored' sperm and was then successively artificially inseminated with the 'fresh' sperm). Experimental design was fully balanced, so that the sperm from the same male were used both in the 'stored' and 'fresh' conditions. See text and Figure 2 for further details on the experimental design.
DOI: 10.5061/dryad.885r162/1
title: MATLAB Code files
DOI: 10.5061/dryad.8jr0b76/1
title: proportion of time spent in different light environments

description: Proportion of time (sunrise - sunset) spent in each of 6 light environments (buried underground, sheltered under cover, in shade, in partial shade, in partial sun, in full sun) by adult Phrynosoma hernandesi originating from populations at two different elevations (low and high), when at their home site and when reciprocally transplanted (i.e., treatment)
DOI: 10.5061/dryad.8jr0b76/2
title: proportion of morning, afternoon, evening spent in different light environments

description: Proportion of morning (sunrise - 1100h), afternoon (1101h - 1600h), and evening (1601h - sunset) spent in each of 6 light environments (buried underground, sheltered under cover, in shade, in partial shade, in partial sun, in full sun) by adult Phrynosoma hernandesi originating from populations at two different elevations (low and high), when at their home site and when reciprocally transplanted (i.e., treatment)
DOI: 10.5061/dryad.935vc/1
title: Data and Scripts
DOI: 10.5061/dryad.b273q6p/1
title: Genotype data from 580 coho salmon individuals
DOI: 10.5061/dryad.dg32560/1
title: LhesUrbanGeneFlow

description: R scripts used for analyses
DOI: 10.5061/dryad.dg32560/2
title: LhesmtDNAseq

description: FASTA format for mitochondrial ND1 region 210 L. hesperus and 3 L. mactans samples
DOI: 10.5061/dryad.dg32560/3
title: TotalRawSNPs

description: ddRADseq SNPs for 21 populations of Latrodectus hesperus and 3 L. mactans individuals
DOI: 10.5061/dryad.dn663c6/1
title: JAV-01729 Data

description: Data for playback responses, dawn chorus properties, and natural countersinging
DOI: 10.5061/dryad.f61v3tj/1
title: Twitter Hourly Words

description: Time series of hourly frequencies for 9,096 psychometric words sampled between 1st January 2010 and 31st October 2014 in a represensative set of Twitter Content across the United Kingdom.
DOI: 10.5061/dryad.f81sj/1
title: Draft pan-genome sequence of american B73 and european F2 maize lines

description: The archive file contains the draft sequence of the american B73 and the european F2 maize lines pan-genome (fast format), the gene prediction for F2-specific regions (gtf format) and the location of F2- and B73-specific regions (gff format). More details are available from README files included in the archive.
DOI: 10.5061/dryad.f81sj/2
title: ZeaMaysF2 draft assembly

description: Zea mays F2 assembly draft release 1.0
02/2014
Aude Darracq, Johann Joets
Contact: joets@moulon.inra.fr 
UMR GGE, 91190 Gif-sur-Yvette, France

Assembly was conducted from a set of several illumina sequencing libraries paired-end and mate-pair as well as w mseq library for a total depth of 90X.
Reads have been cleaned and error corrected before beeing assembled with ABySS software (K=81). Contigs were further assembled into scaffolds using SSPACE and gap were filled using Gapfiller.
# scaffolds (&gt;200 bp)   590,011
largest scaffold        130 kb
scaffold N50                    14 kb
assembly length         1.6 Gb
% of covered genome     65
DOI: 10.5061/dryad.fc0m627/4
title: data_fig4

description: Data used to generate figure 4
DOI: 10.5061/dryad.fc0m627/5
title: data_fig5

description: Data used to generate figure 5.
DOI: 10.5061/dryad.fj83q7f/1
title: de Ollas at al 2018

description: Raw data of all figures and supplemental
DOI: 10.5061/dryad.hj07m/1
title: Linear regression between PPES and gene-to-reference tree incompatibilities

description: Files with the PPES and number of incompatibilities to reference tree for each gene in a given dataset, alongside an r script that performs linear regression between PPES and incompatibilities and makes barplot in Figure 4
DOI: 10.5061/dryad.hj07m/2
title: Correlations among test statistic PPES rankings

description: Files with the ranks of genes based on test statistic PPES and r scripts for generating a null distribution of ranks between pairwise comparisons of the test statistics to calculate the spearman's rank correlation coefficient between any two test statistics
DOI: 10.5061/dryad.hj07m/4
title: Gene-to-reference-tree incompatibilities tree files

description: Files of reduced 95% consensus trees used to calculate incompatibilities with reference trees and csv files of the number of incompatibilities between gene trees and references trees.
DOI: 10.5061/dryad.hj07m/5
title: Summary Trees

description: Majority rule, 95% consensus, and MCC summary tree files
DOI: 10.5061/dryad.hj07m/6
title: Treescaper input files

description: Nexus files that contain 250 trees from the posterior distribution of each gene for a given dataset. These files are uploaded into Treescaper to calculate RF distances and NLDR plots.
DOI: 10.5061/dryad.hj07m/7
title: Python script to calculate X2 data-based test statistic

description: Python script to call the function in P4 phylogenetics python package that calculates the X2 data-based test statistic
DOI: 10.5061/dryad.hj07m/8
title: PPES_calculation

description: Example python scripts to calculation PPES from the test statistics calculated using the programs PuMA, AMP, and the chitest.py script.
DOI: 10.5061/dryad.jb79430/1
title: Dataset4_RawData

description: Tarball containing raw data in the form of 5 .sff.txt files. Corresponding mapping files for demultiplexing of each raw file are provided, in addition to a combined mapping file with treatment information.
DOI: 10.5061/dryad.jb79430/3
title: Dataset3_Dryad

description: Tar archive consisting of 20 .fastq files representing raw, demultiplexed data.
DOI: 10.5061/dryad.k15f3t5/1
title: Breast cancer questionnaire

description: Values for health state for each participant according to either standard gamble or visual analogue scale (VAS)
DOI: 10.5061/dryad.mp1bk57/1
title: Database for the meta-analysis of plant intraspecific diversity effects on arthropods

description: Datafile includes reference to a study from which the data have been extracted, trophic level of arthropods examined in the study, feeding specialization for herbivores (specialist/generalist), plant species, info on whether several plant genotypes or just a single plant genotype were represented in monocultures, plant type	(crop/wild), arthropod response variable measured (species richness=richness, diversity=Shannon-Weiner index; evenness, abundance, damage (for herbivores, e.g. % leaf area damage), parasitism rate (for parasitoids), fecundity or biomass), effect size (Hedges' d) and variance of the effect size (var d).
The full list of references used in the meta-analysis is available in the original paper (data sources for the meta-analysis)
DOI: 10.5061/dryad.mp1bk57/2
title: Comparison of genetic vs species diversity effects

description: Dataset for comparison of plant genetic and species diversity effects on arhtropods including reference from which the data were extracted, trophic level of arthropods, response variable, effect size (Hedges' d and variance for plant genetic diversity effects, and effect size and variance for plant species diversity effects.
DOI: 10.5061/dryad.qd2483b/1
title: NeuralData_Cabrera-AlvarezSwaneyReader_2017_ForebrainActivationDuringSocialExposureInWild-typeGuppies_PhysiologyAndBehaviour
DOI: 10.5061/dryad.qd2483b/2
title: BehaviouralData_Cabrera-AlvarezSwaneyReader_2017_ForebrainActivationDuringSocialExposureInWild-typeGuppies_PhysiologyAndBehaviour
DOI: 10.5061/dryad.qd2483b/3
title: README

description: This file explains all of the variables in each of the datasets that accompany: Cabrera-Álvarez, María J., Swaney, William T., Reader, Simon M. (2017) Forebrain activation during social exposure in wild-type guppies. Physiology & Behaviour 182, 107-113.
DOI: 10.5061/dryad.r51j7/1
title: LocationInformation-MicrosatelliteGenotypes

description: Sampling locations, morphological data and microsatellite genotypes for 264 Paracirrhites arcatus individuals from Hawaii Island (USA). Microsatellite loci gen bank accession#JN886952-JN886989.
DOI: 10.5061/dryad.r51j7/2
title: MicrosatelliteGenotypes_264ind_Parcatus_GenePop-format

description: Microsatellite genotypes in GenePop file format (3 digit alleles), 000 = missing. 30 microsatellite loci, 264 individuals.
DOI: 10.5061/dryad.r98jq6j/4
title: Specific leaf area data

description: Areas, masses, and specific areas for collected leaves
DOI: 10.5061/dryad.r98jq6j/5
title: Leaf morphology data

description: Areas, lengths, and widths of leaves collected from three plants per chamber
DOI: 10.5061/dryad.r98jq6j/6
title: Chlorophyll index data

description: Spectral-based measurement of chlorophyll content measured in leaves
DOI: 10.5061/dryad.r98jq6j/7
title: Stomatal density data

description: Number of stomata counted per unit area from leaf peels
DOI: 10.5061/dryad.r98jq6j/8
title: Stomatal dimension data

description: Lengths, widths, and areas of stomata identified in leaf peels
DOI: 10.5061/dryad.r98jq6j/9
title: Annual GPP

description: Output from runs of a simulation model describing stand level gross primary productivity
DOI: 10.5061/dryad.tn60810/2
title: Table S5

description: OTU Table from 16S rRNA sequencing: contaminants removed, rarified to 8,000 reads/sample
DOI: 10.5061/dryad.tn60810/3
title: Table S6

description: OTU Table from 16S rRNA sequencing: contaminants removed, rarified to 500 reads/sample
DOI: 10.5061/dryad.tn60810/4
title: ddPCR Data

description: ddPCR data from Figures 1, 2, 3, S1
DOI: 10.5061/dryad.28sm8.2/10.2
title: Cribriform plate surface area data for individual specimens, .csv format

description: Identification, source, sex and morphological data for sample species.  Abbreviations, AMNH: American Museum of Natural History.  CMNH: Cleveland Museum of Natural History. DLC: Duke Lemur Center. DUPC: Duke University Primate Center. IZCAS: Institute of Zoology of the Chinese Academy of Sciences. LACM: Natural History Museum of Los Angeles County. LACMRLP: Rancho La Brea Tar Pits. MVZ: Museum of Vertebrate Zoology. SDSNH: San Diego Society of Natural History. UCLA: Dickey Collection at the University of California Los Angeles. UCLAEEB: UCLA Department of Ecology and Evolutionary Biology. USNM: National Museum of Natural History. UTO: University of Texas Austin. TMM: Texas Memorial Museum. *The presence of a cribriform plate in the ethmoid bone of the bottlenose dolphin (Tursiops truncatus) could not be established in this study.
DOI: 10.5061/dryad.28sm8.2/14.2
title: Morphological and genomic data for sample species, Excel format

description: Abbreviations: CP, cribriform plate; ORG, olfactory receptor gene.  Body mass estimates are species means. Where sexual dimorphism was present, we considered the sex of individuals when deriving the species body mass.  Individual dog breed body size estimates were averaged to calculate the mean body mass of the dog (Canis familiaris).  References for body mass and ORG data listed below the table.  For cribriform plate surface area data of individual specimens, see table S5.
DOI: 10.5061/dryad.28sm8.2/15.2
title: Morphological and genomic data for sample species, .csv format

description: Abbreviations: CP, cribriform plate; ORG, olfactory receptor gene.  Body mass estimates are species means. Where sexual dimorphism was present, we considered the sex of individuals when deriving the species body mass.  Individual dog breed body size estimates were averaged to calculate the mean body mass of the dog (Canis familiaris).  References for body mass and ORG data listed below the table.  For cribriform plate surface area data of individual specimens, see table S5.
DOI: 10.5061/dryad.28sm8.2/16.2
title: Assembly statistics for genome assemblies from which olfactory receptor gene counts were extracted, Excel format

description: Abbreviations, BGI: Beijing Genomics Institute; BCM: Baylor College of Medicine; Broad: Broad Institute; ICGSC: International Cat Genome Sequencing Consortium; WU: Washington University. Sources of data: NCBI Assembly, University of California Santa Cruz Genome Browser, Genome Reference Consortium.
DOI: 10.5061/dryad.28sm8.2/17.2
title: Assembly statistics for genome assemblies from which olfactory receptor gene counts were extracted; .csv format

description: Abbreviations, BGI: Beijing Genomics Institute; BCM: Baylor College of Medicine; Broad: Broad Institute; ICGSC: International Cat Genome Sequencing Consortium; WU: Washington University. Sources of data: NCBI Assembly, University of California Santa Cruz Genome Browser, Genome Reference Consortium.
DOI: 10.5061/dryad.28sm8.2/8.2
title: Key resource table, .csv format

description: Key resource table for sample specimens, CT scanning machines and facilities, and digital imaging software.
DOI: 10.5061/dryad.28sm8.2/9.2
title: Cribriform plate surface area data for individual specimens, Excel format

description: Identification, source, sex and morphological data for sample species.  Abbreviations, AMNH: American Museum of Natural History.  CMNH: Cleveland Museum of Natural History. DLC: Duke Lemur Center. DUPC: Duke University Primate Center. IZCAS: Institute of Zoology of the Chinese Academy of Sciences. LACM: Natural History Museum of Los Angeles County. LACMRLP: Rancho La Brea Tar Pits. MVZ: Museum of Vertebrate Zoology. SDSNH: San Diego Society of Natural History. UCLA: Dickey Collection at the University of California Los Angeles. UCLAEEB: UCLA Department of Ecology and Evolutionary Biology. USNM: National Museum of Natural History. UTO: University of Texas Austin. TMM: Texas Memorial Museum. *The presence of a cribriform plate in the ethmoid bone of the bottlenose dolphin (Tursiops truncatus) could not be established in this study.
DOI: 10.5061/dryad.31k1f/1
title: Pathways and costs incurred by new adult pulmonary tuberculosis patients prior to anti-tuberculosis treatment

description: This study used the pre-treatment pathways and costing data collected for the larger study- "Community Volunteers, Solidarity and Case management of Tuberculosis" conducted in rural south India.
DOI: 10.5061/dryad.44pp0.1
title: Data from: Roads elicit negative movement and habitat-selection responses by wolverines (Gulo gulo luscus)
DOI: 10.5061/dryad.44pp0.2
title: Data from: Roads elicit negative movement and habitat-selection responses by wolverines (Gulo gulo luscus)
DOI: 10.5061/dryad.46tj577/1
title: Riehl_Greater Ani Reproductive Synchrony Data (Dryad)

description: Data for models investigating the number of days needed for females to synchronize reproduction in communally breeding Greater Anis, using female age, group size, clutch initiation date,  group stability, and other variables as predictors. Note that female age is the minimum known age of adults in the population, and is therefore an underestimate for the first 3 years of the study (2007-2009). In all binary variables, 0 = no and 1 = yes.
DOI: 10.5061/dryad.6vd5d71/3
title: Behavioral variables (parents absent)

description: Database with behavioral variables during parent-absent events (number of parent-absent events with begging and begging intensity in parent-absent events) . Note that there are 2 data per nest corresponding to UVreduced and non_UV reduced chicks.
DOI: 10.5061/dryad.7187rf5/1
title: Experiment 1 test data

description: This file contains all bee choices for each test (learning, conflict and transfer) performed in Experiment 1.
DOI: 10.5061/dryad.7187rf5/2
title: Experiment 2 test data

description: This file contains all bee choices for each test (learning, conflict and transfer) performed in Experiment 2.
DOI: 10.5061/dryad.7187rf5/3
title: Experiment 3 test data

description: This file contains all bee choices for each test performed in Experiment 3.
DOI: 10.5061/dryad.7187rf5/4
title: Experiment 4 test data

description: This file contains all bee choices for each test (learning, conflict and transfer) performed in Experiment 4.
DOI: 10.5061/dryad.7187rf5/5
title: Experiment 5 test data

description: This file contains all bee choices for each test (learning and transfer) performed in Experiment 5.