cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8syw7r
title: Occurrence Download

description: A dataset containing 1922 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((5.421581938486302 47.98710934501332, 5.427176633440236 47.9852221171131, 5.427768717205199 47.98230898057793, 5.436352668757186 47.98563377446642, 5.436743240955593 47.982140431923376, 5.438804156150192 47.98251366282333, 5.439032798791956 47.98066320122472, 5.446574150509051 47.98347137448304, 5.453938386711759 47.9790484178068, 5.458814984013896 47.98152335417433, 5.460290069488039 47.98423768582948, 5.448005100542508 47.99072992887625, 5.447214017851953 47.99210051788774, 5.448983456439423 47.993673503933174, 5.445705565621925 47.994930175463814, 5.445971800120923 47.996048269302406, 5.442424147478011 47.99614270785453, 5.441502951602242 48.00098226588219, 5.448448732927067 48.002536826155875, 5.444556985055554 48.00626054828606, 5.455039327504926 48.00993711427294, 5.452025592834137 48.01216528489668, 5.451324472768365 48.0151654128901, 5.441859361626413 48.01613653057041, 5.438703801716038 48.014692126045794, 5.438295982019329 48.016006059108626, 5.428959621739992 48.01917746130092, 5.424924889022155 48.01901399611124, 5.421667857218796 48.021800051263256, 5.414682576719643 48.0239189060029, 5.404754920127254 48.018149511469694, 5.402711953562146 48.01878815911034, 5.391967083310784 48.00696445607414, 5.392996912084421 48.003922933695854, 5.399114205816498 48.001873428866396, 5.401267393002754 47.99394261548282, 5.408414361676399 47.987725510427865, 5.421581938486302 47.98710934501332))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1922 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009212-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.caandz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (c(3055355, 3055354, 2901121, 3080039, 5544277, 5544280, 5544277, 5421368, 5407060, 5407060, 5407273, 5407273, 3155252, 9291, 5407060, 2738136, 2738136, 2738136, 2738136, 2738136, 2738136, 2738081, 2738136, 2732758, 2732758, 2733161, 2733179, 2732946, 2732946, 2733109, 2732906, 2733109, 3880036, 3156935, 2923922, 2923922, 7285020, 7285639, 7285610, 3191347, 3191347, 3181652, 2933026, 3190513, 7269677, 3826009, 5331145, 4939887, 4939887, 3623053, 3622600, 3622600, 4013210, 4013609, 4013609, 4013385, \n2984472, 2984472, 2984472, 2984472, 4013607, 4013210, 11201061, 5339445, 3157765, 2885694, 4054992, 4054992, 3189424, 4036997, 7291748, 2888822, 5660556, 7316389, 7273298, 3054262, 7273298, 3154022, 6634, 6634, 3625312, 3157573, 3157573, 3685635, 2892122, 2892122, 2892122, 2892122, 2892079, 2886343, 7326782, 3083183, 5417465, 5417465, 3177662, 5293398, 5293425, 5293425, 5361926, 6358534, 5570069, 2984588, 2984588, 2984588, 2984588, 2984588, 2984588, 2984588, 3158135, 7329866, 2882751, 2895593, 2895593, \n2895593, 2895593, 2895591, 2895592, 2895592, 7323252, 3155604, 3978576, 5383796, 2760545, 3071171, 3071171, 3071171, 3071158, 3071158, 3071158, 2514, 2943127, 5380015, 2965936, 2965936, 2965936, 2928595, 7316922, 3990, 3990, 3082348, 7296446, 2985563, 2985250, 2874598, 3071743, 3071743, 2959589, 2948882, 3071812, 2885024, 5383279, 5294777, 5293388, 2732690, 7263475, 2411, 3863707, 2969430, 2868256, 3871067, 3870514, 2760990, 3174706, 10342163, 5014, 3034018, 7304432, 7304432, 7304432, 8120471, 8120471, \n8120471, 2884788, 7268633, 2735454, 2735454, 4135864, 3189667, 5420626, 2898662, 2874190, 2874172, 2874172, 3189950, 3189948, 3793418, 3061139, 3075266, 7276114, 2884079, 2884079, 2884082, 2884049, 2884629, 7286732, 7286732, 4073645, 4073645, 5420626, 5420509, 5420336, 2919963, 2922815, 3986470, 5339445, 3874704, 7507748, 8798, 5379876, 5379830, 2957303, 7329562, 7329562, 7329562, 3709147, 3709147, 7329561, 2732453, 2929628, 3762996, 3762996, 7275871, 8185571, 7289390, 5645855, 7291273, 7291273, \n4091129, 4091129, 3169624, 3189946, 7321529, 3189600, 3114910, 3240307, 7271401, 3190490, 3157818, 3157818, 3157787, 3157765, 3189974, 5553148, 3152848, 3152843, 3152843, 7309596, 7309596, 7309596, 3157015, 3190076, 2939650, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA))",
 "Country is one of (Bolivia (Plurinational State of))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009213-260129131611470/datasets/export for details.
DOI: 10.15468/dl.r2cb36
title: Occurrence Download

description: A dataset containing 1251585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acipenser",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1251585 records from 206 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009132-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3fb3z2
title: Occurrence Download

description: A dataset containing 3779904 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Quiscalus mexicanus"
 ]
}

 The dataset includes 3779904 records from 290 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009174-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18466010
title: Sapian AI deciphers polypharmacology to identify novel therapeutic targets in LGMDR2

description: Sapian AI deciphers polypharmacology to identify novel therapeutic targets in LGMDR2

This repository holds code related to polypharmacology & biostatistics analysis related to the publication

Sapian AI deciphers polypharmacology to identify novel therapeutic targets in LGMDR2Nicolas Maignan4, Emilie Pellier1,2 Quentin Miagoux1,2 Johana Tournois1,2,3 David Papazian4, Rubal Ravinder4, Maxime Georges4, Jack Dawe4, Caio Hudson Queiroz de Souza4 Mike Maillasson5,6 Céline Bruge1,2 Nik Subramanian4 & Xavier Nissan1,2These authors contributed equally: Nicolas Maignan, Emilie Pellier, Quentin MiagouxCorresponding authors: Nik Subramanian, Xavier Nissan1 Université Paris-Saclay, Université d'Evry, Inserm, IStem, UMR861, Corbeil-Essonnes, France.2 IStem, CECS, Corbeil-Essonnes, France.3 IStem, CECS, The Research and Innovation Team, Corbeil-Essonnes, France. 4 KANTIFY, Bruxelles, Belgium. 5 Nantes University, CNRS, Inserm, CRCI2NA, Nantes, France. 6 Nantes University, Centre Hospitalo-Universitaire (CHU) Nantes, Inserm, CNRS, SFR Bonamy, UMS BioCore, IMPACT Platform, Nantes, France.
DOI: 10.5281/zenodo.18466238
title: Terrain attributes, soil erosion rate and soil properties on a sloping farmland in the black soil region of northeast China

description: Over a ~860 long sloping farmland in the black soil region of northeast China, a total of 43 sites were arranged in an interval of 20 m. At each site, eight terrain attributes were extracted from a high-resolution DEM. Soil samples were collected for the determinations of soil erosion rate (ER) and a total of 15 soil physical and chemical properties.
DOI: 10.6084/m9.figshare.27229761
title: Rumen ciliates modulate methane emissions in ruminants

description: The rumen ciliate genome (RCG) catalog was constructed using three omics approaches. First, we manually isolated ciliates based on their morphology from the rumen of cattle, sheep, goat, and deer, conducting single-cell next-generation and HiFi sequencing to generate 436 SAGs. Second, we compiled 2,007 metagenomic datasets from 50 studies across 16 ruminant species worldwide and performed co-assembly and binning to obtain 108 rumen ciliate MAGs. Third, we incorporated previously published data from 69 single-cell sequencing datasets of rumen ciliates and from the <i>Entodinium caudatum</i> genome. Genomic data of rumen ciliates often contain significant contamination from prokaryotes, plant materials, fungi, and endo- or ectosymbionts. The main challenge in obtaining ciliate genomes is distinguishing the ciliate sequences from the abundant contaminating sequences. We developed a new genome decontamination pipeline (iGDP, https://github.com/CodeFeiX/iGDP-rc) optimized for rumen ciliate genome purification, which effectively removed these contaminants. On average, 91.9% of the assembled sequences were identified as contaminants and subsequently removed, which only reduced the rumen ciliate genome BUSCO completeness by 11.2%, demonstrating the high effectiveness of iGDP. In total, we obtained 450 genomes that met medium-quality standards (completeness &gt; 50%), including 233 genomes considered high-quality (completeness &gt; 80%; 215 SAGs, 17 MAGs, and 1 genome from a ciliate monoculture). Notably, 87% of these genomes are novel, highlighting the previously unexplored representation of rumen ciliates. Genome evaluation showed that there were no discordant peaks for the GC content in these genomes, and an average of 72.7% of contigs in all genomes that contained telomeres specific to rumen ciliates or were supported by telomere sequences. These constitute the largest high-purity rumen ciliate genomes (RCGs) reported to date, providing novel guidelines and resources for studying the rumen microbiome. The entire RCG catalog and associated information is available at https://ngdc.cncb.ac.cn/rcg_rbag.<b>The RCG-associated gene prediction information is available here:</b>RCG_450.cds.zip: Gene files corresponding to 450 rumen ciliate genomes.RCG_450.pep.zip: Protein files corresponding to 450 rumen ciliate genomes.RCG_450.gtf.zip: GTF files corresponding to 450 rumen ciliate genomes.<br>
DOI: 10.6084/m9.figshare.27229761.v1
title: Rumen ciliates modulate methane emissions in ruminants

description: The rumen ciliate genome (RCG) catalog was constructed using three omics approaches. First, we manually isolated ciliates based on their morphology from the rumen of cattle, sheep, goat, and deer, conducting single-cell next-generation and HiFi sequencing to generate 436 SAGs. Second, we compiled 2,007 metagenomic datasets from 50 studies across 16 ruminant species worldwide and performed co-assembly and binning to obtain 108 rumen ciliate MAGs. Third, we incorporated previously published data from 69 single-cell sequencing datasets of rumen ciliates and from the <i>Entodinium caudatum</i> genome. Genomic data of rumen ciliates often contain significant contamination from prokaryotes, plant materials, fungi, and endo- or ectosymbionts. The main challenge in obtaining ciliate genomes is distinguishing the ciliate sequences from the abundant contaminating sequences. We developed a new genome decontamination pipeline (iGDP, https://github.com/CodeFeiX/iGDP-rc) optimized for rumen ciliate genome purification, which effectively removed these contaminants. On average, 91.9% of the assembled sequences were identified as contaminants and subsequently removed, which only reduced the rumen ciliate genome BUSCO completeness by 11.2%, demonstrating the high effectiveness of iGDP. In total, we obtained 450 genomes that met medium-quality standards (completeness &gt; 50%), including 233 genomes considered high-quality (completeness &gt; 80%; 215 SAGs, 17 MAGs, and 1 genome from a ciliate monoculture). Notably, 87% of these genomes are novel, highlighting the previously unexplored representation of rumen ciliates. Genome evaluation showed that there were no discordant peaks for the GC content in these genomes, and an average of 72.7% of contigs in all genomes that contained telomeres specific to rumen ciliates or were supported by telomere sequences. These constitute the largest high-purity rumen ciliate genomes (RCGs) reported to date, providing novel guidelines and resources for studying the rumen microbiome. The entire RCG catalog and associated information is available at https://ngdc.cncb.ac.cn/rcg_rbag.<b>The RCG-associated gene prediction information is available here:</b>RCG_450.cds.zip: Gene files corresponding to 450 rumen ciliate genomes.RCG_450.pep.zip: Protein files corresponding to 450 rumen ciliate genomes.RCG_450.gtf.zip: GTF files corresponding to 450 rumen ciliate genomes.<br>
DOI: 10.15468/dl.55fkb2
title: Occurrence Download

description: A dataset containing 552071 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Africa",
 "Country is Nigeria",
 "Geometry POLYGON((2.5 4,15 4,15 14,2.5 14,2.5 4))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is CC-BY 4.0",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)",
 "Year 2018-2022"
 ]
}

 The dataset includes 552071 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009164-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21334/npolar.2017.161d5fc2
title: Barneo-2016 buoy data
DOI: 10.15468/dl.tzm2h8
title: Occurrence Download

description: A dataset containing 1572 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tephroseris crispa, Tephroseris crispa, Senecio crispatus, Senecio rivularis, Senecio rivularis, Senecio rivularis)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 1572 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009217-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c6ujn6
title: Occurrence Download

description: A dataset containing 9767 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((7.5598 47.56293,7.59762 47.56293,7.59762 47.58619,7.5598 47.58619,7.5598 47.56293))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 9767 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009216-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17482533
title: Dataset article Electronics
DOI: 10.5281/zenodo.17482534
title: Dataset article Electronics
DOI: 10.34740/kaggle/dsv/13554503
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.tvfx2p
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Panthera uncia"
 ]
}

 The dataset includes 35 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079321-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18168162
title: BPAEC dataset

description: Including BPAEC dataset and pre-trained models.
DOI: 10.5517/ccdc.csd.cc2bpp80
title: CCDC 2165792: Experimental Crystal Structure Determination

description: Related Article: Lukman O. Alimi, Fang Fang, Basem Moosa, Yanjun Ding, Niveen M. Khashab|2022|Angew.Chem.,Int.Ed.|61|e202212596|doi:10.1002/anie.202212596
description: Related Article: Lukman O. Alimi, Nida Khalfay, Soumaya Khlifi, Weibin Lin, Basem Moosa, Niveen M. Khashab|2025|Chemical Science|17|511|doi:10.1039/d5sc06328k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bpp91
title: CCDC 2165793: Experimental Crystal Structure Determination

description: Related Article: Lukman O. Alimi, Fang Fang, Basem Moosa, Yanjun Ding, Niveen M. Khashab|2022|Angew.Chem.,Int.Ed.|61|e202212596|doi:10.1002/anie.202212596
description: Related Article: Lukman O. Alimi, Nida Khalfay, Soumaya Khlifi, Weibin Lin, Basem Moosa, Niveen M. Khashab|2025|Chemical Science|17|511|doi:10.1039/d5sc06328k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fk72b
title: CCDC 2250881: Experimental Crystal Structure Determination

description: Related Article: Taolue Liu, Yu Wei, Guojie Gao, Mingxia Guo, Jinxuan Liu, Xin Ding, Yingying Li, Yan Gao|2025|Chemical Science|17|555|doi:10.1039/d5sc07030a
description: Related Article: Taolue Liu|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j207w
title: CCDC 2325627: Experimental Crystal Structure Determination

description: Related Article: Chenggong Zheng, Jiyong Liu, Yongtao Wang, Haoran Li, Yuwen Wang, Zhan Lu|2025|Chemical Science|17|492|doi:10.1039/d5sc06683b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j62vp
title: CCDC 2329552: Experimental Crystal Structure Determination

description: Related Article: Chenggong Zheng, Jiyong Liu, Yongtao Wang, Haoran Li, Yuwen Wang, Zhan Lu|2025|Chemical Science|17|492|doi:10.1039/d5sc06683b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jhkm7
title: CCDC 2338659: Experimental Crystal Structure Determination

description: Related Article: Chenggong Zheng, Jiyong Liu, Yongtao Wang, Haoran Li, Yuwen Wang, Zhan Lu|2025|Chemical Science|17|492|doi:10.1039/d5sc06683b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jhkn8
title: CCDC 2338660: Experimental Crystal Structure Determination

description: Related Article: Chenggong Zheng, Jiyong Liu, Yongtao Wang, Haoran Li, Yuwen Wang, Zhan Lu|2025|Chemical Science|17|492|doi:10.1039/d5sc06683b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jp5v8
title: CCDC 2344060: Experimental Crystal Structure Determination

description: Related Article: Chenggong Zheng, Jiyong Liu, Yongtao Wang, Haoran Li, Yuwen Wang, Zhan Lu|2025|Chemical Science|17|492|doi:10.1039/d5sc06683b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jp5w9
title: CCDC 2344061: Experimental Crystal Structure Determination

description: Related Article: Chenggong Zheng, Jiyong Liu, Yongtao Wang, Haoran Li, Yuwen Wang, Zhan Lu|2025|Chemical Science|17|492|doi:10.1039/d5sc06683b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jtyt4
title: CCDC 2348647: Experimental Crystal Structure Determination

description: Related Article: Chenggong Zheng, Jiyong Liu, Yongtao Wang, Haoran Li, Yuwen Wang, Zhan Lu|2025|Chemical Science|17|492|doi:10.1039/d5sc06683b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k09sp
title: CCDC 2353792: Experimental Crystal Structure Determination

description: Related Article: Chenggong Zheng, Jiyong Liu, Yongtao Wang, Haoran Li, Yuwen Wang, Zhan Lu|2025|Chemical Science|17|492|doi:10.1039/d5sc06683b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k3dtx
title: CCDC 2356769: Experimental Crystal Structure Determination

description: Related Article: Chenggong Zheng, Jiyong Liu, Yongtao Wang, Haoran Li, Yuwen Wang, Zhan Lu|2025|Chemical Science|17|492|doi:10.1039/d5sc06683b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.