cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17037/data.00001681
title: Clinical codelist - Chronic liver disease codes

description: Read codes for Chronic liver disease.
DOI: 10.17037/data.00001680
title: Clinical codelist - Systematic lupus erythematosus codes

description: Read codes for Systematic lupus erythematosus.
DOI: 10.5061/dryad.4f10p/4
title: dataset for height

description: Phenotypic observations for height with nine columns: trial ID, testedas (C: clone, F for full-sibs), tree ID, replicate, setgroup, row, block (Blk), age of assessment and height observation in meters
DOI: 10.5061/dryad.4qn4s47/4
title: Source_5_maupoly

description: Comma delimited text file. Output of POPBAM and Gmin scans.
DOI: 10.5061/dryad.4qn4s47/5
title: Source_6_Gmin_5kb_windows

description: Comma delimited text file. Output of POPBAM and Gmin scans.
DOI: 10.5061/dryad.4qn4s47/6
title: Output of HMM ancestry analysis

description: 590 R data files
DOI: 10.5061/dryad.4qn4s47/7
title: Fertility of individual sim wXD1 males

description: Tab delimited text file.
DOI: 10.5061/dryad.4qn4s47/8
title: Fertility of individual mau w12 males

description: Tab delimited text file.
DOI: 10.5061/dryad.4qn4s47/9
title: Images of HMM ancestry analysis

description: pdf images of HMM output
DOI: 10.5061/dryad.578qn84/1
title: Sample barcodes

description: Samples were multiplexed for sequencing. This file gives barcodes associated with each sample. Note: samples 153148, 26601, and 26601 were dropped from the analysis due to low sequencing coverage (153148) and sample mix-up (26601 and 26606)
DOI: 10.5061/dryad.578qn84/2
title: Replace this file

description: This file contains RAD-sequencing reads in .fastq format. Raw reads were originally processed by Bejing Genomics Institute, and this file includes only clean reads. This file was used as the initial input to the STACKS pipeline. Note: samples 153148, 26601, and 26601 were dropped from the analysis due to low sequencing coverage (153148) and sample mix-up (26601 and 26606), but reads associated with these samples are present in this file.
DOI: 10.5061/dryad.5p58q34/1
title: Zea_mays.MSU.gene.info.txt

description: MSU functional gene annotation and information for AGPv4 maize genes, including representative transcript information
DOI: 10.5061/dryad.5p58q34/2
title: Zea_mays.MSU.InterPro.hits.txt

description: InterPro (v67.0) matches to AGPv4 maize transcripts
DOI: 10.5061/dryad.5p58q34/3
title: Zea_mays.MSU.PFAM.hits.txt

description: PFAM (v31.0) matches to AGPv4 maize transcripts
DOI: 10.5061/dryad.5p58q34/4
title: Zea_mays.MSU.GO.terms.transcr.txt

description: Gene Ontology term assignments for AGPv4 transcripts identified from the InterPro hits
DOI: 10.5061/dryad.6467hv5/1
title: Assembled dataset_MARE_1.5 analysis

description: Assembled molecular dataset underlying the MARE 1.5 analysis.
DOI: 10.5061/dryad.6467hv5/2
title: Assembled dataset_MARE_2 analysis

description: Assembled datatset underlying the MARE 2 analysis.
DOI: 10.5061/dryad.75j0k9c/1
title: All_ResultSummary

description: Data file containing all simulation results. Column "Group" represents the group classification for each value, used to subset data for different analyses. "SimID" uniquely identifies each simulation's parameterisation (represented by the parameters: "Coupled", "NoPolliYield", "Rmax", "CarryingCapacity", "DispersalType").
DOI: 10.5061/dryad.792r3k1/1
title: Data from prey avoidance and predator colour polymorphism

description: Data from two experiments designed to test the impact of predator colour polymorphism on prey behaviour.
DOI: 10.5061/dryad.8tt0411/1
title: relevant datas for replication studies
DOI: 10.5061/dryad.93553v8/1
title: Quercus_data

description: This table contains the geographical coordinates (in the Iberian Peninsula) and four environmental variables (bio3=isothermality, bio6=minimum temperature of coldest month, bio12=annual precipitation and bio17=precipitation of driest quarter) for each occurrence of the six Quercus taxa modelled in our work (Qrob = Quercus robur, Qpyr = Quercus pyrenaica, Qbro = Q. faginea subsp. broteroi,  Qfag = Q. faginea subsp. faginea, Qsub = Q. suber, Qrot =  Q. rotundifolia). Original occurrence data were obtained from the Proyecto Anthos (http://www.anthos.es) and from the Herbarium “João de Carvalho e Vasconcellos” (Lisbon, LISI).
DOI: 10.5061/dryad.96712kh/1
title: All primer sequences

description: All primer sequences tested to identify the selected primer set.
DOI: 10.5061/dryad.96712kh/2
title: Genetic Distances

description: Intraspecific and interspecific genetic distances within Hawaiian Tetragnatha species for 4 mitochondrial and 3 nuclear loci
DOI: 10.5061/dryad.96712kh/3
title: Blast results from specimen pools

description: Blast results and fold change values from specimen pools for all analyzed markers
DOI: 10.5061/dryad.96712kh/4
title: Mitochondrial genomes used for primer design
DOI: 10.5061/dryad.96712kh/5
title: Alignments of nine loci for all spiders
DOI: 10.5061/dryad.96712kh/6
title: Sequence files for specimen pools for all loci

description: Sequences for all loci, which were amplified for the arthropod specimen pools
DOI: 10.5061/dryad.b387qp0/4
title: kud50% and kud95% of P. leopardus from Opal Reef and Heron Island at all levels of time (weekly, monthly, overall)

description: This file contains data on the kud50% and kud95% of each individual throughout the sampling period. The 'time' column contains: all, weekly, monthly. All; is the overall kud50% and kud95% values for the individual throughout the study. Weekly; is the average weekly kud50% and kud95% for each individual throughout the study. And monthly; is the average monthly kud50% and kud95% values for each individual throughout the study
DOI: 10.5061/dryad.b387qp0/5
title: Proportional differences in weekly overlap for 50%kud and 95%kud

description: This data was used to make Figure_SF4. The columns prop.50% and prop.95% are the proportion of overlap of activity space with the week before. A value of 1= complete overlap (no new space used compared with previous week), whereas a value of 0=completely different activity space used compared with the previous week.
DOI: 10.5061/dryad.b387qp0/6
title: Monthly Residency

description: These data assist with calculating monthly residency indices, which is how much time an individual was detected within the array. This is calculated by dividing the number of days an individual was detected at any receiver by the number of days in each month.
DOI: 10.5061/dryad.hh42t4j/1
title: 1.0_Discription_of_dissection_images
DOI: 10.5061/dryad.hh42t4j/2
title: 1.1_Summary
DOI: 10.5061/dryad.hh42t4j/3
title: 2.0_Discription_of_coupling_pairs
DOI: 10.5061/dryad.hh42t4j/4
title: 2.1_Duration
DOI: 10.5061/dryad.k57430s/1
title: Online Appendix 1

description: Extended Methods section including: DNA Extraction and Library Preparation, and Target Enrichment and Sequencing of UCEs.
DOI: 10.5061/dryad.k57430s/2
title: Online Appendix 2

description: Extended Methods section including: Assembly and Alignment of Sequence Capture Data.
DOI: 10.5061/dryad.k57430s/4
title: gymno_full_dataset_min75_complete

description: Individual UCE loci alignments that are common to at least 75% of taxa in the full dataset of Gymnotiformes (966 loci, 47 taxa). Codes for individual names in README.
DOI: 10.5061/dryad.kg52rj5/2
title: Jess code
DOI: 10.5061/dryad.n5g39d7/6
title: Concatenated alignments containing Hemimastigophora

description: Concatenated alignments of 351-gene dataset, containing Hemimastigophora, as used in phylogenomic analyses. Trimmed with BMGE, in fasta-format. See README-file for additional information.
DOI: 10.5061/dryad.n5g39d7/7
title: Tree files of phylogenomic analyses

description: Tree files in NEWICK-format of all phylogenomic analyses conducted. See "6_Concatenated alignments" for associated alignment data. See README-file for additional information.
DOI: 10.5061/dryad.n5g39d7/8
title: Non-universal ancient eukaryote genes

description: Alignments (trimmed and untrimmed fasta-files) and tree-files (NEWIC) of non-universal ancient genes found in Hemimastigophora. See README-file for additional information.
DOI: 10.5061/dryad.ph37b2q/1
title: EpiRILsand parentsQTL-mapping_rawLCMScdfs

description: EpiRILs and parents QTL-mapping raw LCMS data
DOI: 10.5061/dryad.ph37b2q/2
title: MutantsSupplTable7_rawLCMscdfs
DOI: 10.5061/dryad.ph37b2q/3
title: samplecodes_rawLCMScdfs
DOI: 10.5061/dryad.rf02203/1
title: data_packet

description: This is a zipped folder that contains the following.
1) A concatenated alignment of ITS and mtSSU sequences from sorediate Lecanora species from the Malicek et al (2017) paper with four new sequences added. File can be found in in both NEXUS (.nex) and PHYLIP (.phy) formats.
2) A concatenated alignment of the six-gene data set of lecanoroid lichens from Zhao et al (2015) with four new sequences added. File can be found in in both NEXUS (.nex) and PHYLIP (.phy) formats. 
3) PDFs of results of the maximum liklihood analyses of single loci from the Malicek et al.(2017) dataset to confirm absence of conflict between loci. 

Full citations:
MalÌcek, J., Berger, F., Palice, Z., & Vondr·k, J. 2017. Corticolous sorediate Lecanora species (Lecanoraceae, Ascomycota) containing atranorin in Europe. The Lichenologist 49: 431-455. 
Zhao, X., Leavitt, S. D., Zhao Z. T., Zhang, L. L., Arup U., Grube, M., PÈrez-Ortega S., Printzen C., Sliwa, L., Kraichak, E., Divakar, P. K., A. Crespo & H. T. Lumbsch. 2015. Towards a revised generic classification of lecanoroid lichens (Lecanoraceae, Ascomycota) based on molecular, morphological and chemical evidence. Fungal Diversity 78: 293-304.
DOI: 10.5061/dryad.s458b5n/1
title: Litter quality - chemistry

description: This file provides the chemical quality data for the litter of Potentilla verna and Bromopsis erecta, sampled in the various land use treatments used in the study. Data presented are CN, CP, NP, polyphenols	(%) and condensed tannins (%). For each litter species in each land use treatments, 3 replicates were measured, except for polyphenols (only one replicate).
DOI: 10.5061/dryad.s458b5n/2
title: Litter quality - physical properties

description: This file provides the chemical quality data for the litter of Potentilla verna and Bromopsis erecta, sampled in the various land use treatments used in the study. Data presented are litter thickness (µm) and litter structural resistance (J.m-1). For each litter species and each land use treatments, eight replcates were measured.
DOI: 10.5061/dryad.s458b5n/3
title: Mass loss and consumption data

description: This file provides the mass loss (including control microcosms without detritivores) and the litter consumption (logically  with NAs for control microcosms without detritivores), as well as the individual body mass of the detritivores. Mass loss unit = mg.day-1) and consumption unit = mg.g.day-1). Since the experiment was made with binary choices, each microcosm is constituted of 2 litter types(called A and B for clarity). A litter type is a litter species collected in a given land use treatment (fertilization - grazing). Mass loss was recorded for three millipede species (GM = Glomeris marginata, OR = Ommatoiulus rutilans, CC = Cylindroiulus caerulocinctus) and two litter species (Bromopsis erecta ex Bromus erectus and Potentilla verna). The land use treatments are exposed in detail in the article.
DOI: 10.5061/dryad.tg386p7/1
title: Firman et al. JEB 2018
DOI: 10.5061/dryad.tq43453/1
title: Data

description: Including the data of feeding trials and data of organisms element concentrations
DOI: 10.17632/2hy5m2yrcw.1
title: Data for: 3276613

description: These files are supporting sound samples (in my voice) for my musicological research article. The article – titled "Kalyāṇ – a Voyage through Dēśa and Kāla" – explores the rāga system in Indian music, in the specific context of a prominent family of rāgas known as Kalyāṇ. It explores their structure, with attention to its historical evolution and geographical variation.
DOI: 10.17632/57rpjpzkr9.1
title: Data for: THE QUINOA BOOM IN PERU: WILL LAND COMPETITION THREATEN SUSTAINABILITY IN ONE OF THE CRADLES OF AGRICULTURE?

description: Supporting Files - External database: "THE QUINOA BOOM IN PERU: WILL LAND COMPETITION THREATEN SUSTAINABILITY IN ONE OF THE CRADLES OF AGRICULTURE?"
DOI: 10.17632/sp49j4ykms.1
title: Data for: Two new 19-Norbufadienolides with Cardiotonic Activity Isolated from the Venom of Bufo bufo gargarizans

description: Supporting Information for Publication
DOI: 10.17632/xnfvz24429.1
title: Data for: Joint decision model of supplier selection and order allocation for the mass customization of logistics services

description: an improved genetic algorithm based on multi-layer coding was designed to solve the model in a manner that will allow the decision maker to simultaneously determine the supplier selection and order allocation strategies
DOI: 10.5061/dryad.0rh6sg5/1
title: Behavioral Measures

description: Behavioral variables (i.e. Jacobs' index, Bateman's index, foraging efficiency, and decision latency) measured per block and subject. Each subject's treatment (i.e. signal complexity, reward reliability, and choice number) are also given.
DOI: 10.5061/dryad.1fm52vv.3
title: Data from: Taxonomic and evolutionary pattern revisions resulting from geometric morphometric analysis of Pennsylvanian Neognathodus conodonts, Illinois Basin
DOI: 10.5061/dryad.1fm52vv.3/1.3
title: Supplementary Figure 1 (Neognathodus plate)

description: Figure 1. Images of type specimens for synonymized Neognathodus species N. medadultimus/N. medexultimus and N. dilatus/N. metanodosus. Pairs are synonymized here to N. medadultimus and N. dilatus, respectively. All images are re-illustrated from previous studies. Scale bar represents one mm. Conodont element identification is fol¬lowed by repository number (if available) and photo reference, stratigraphic unit and the county and state location. See README file for more specific details.
DOI: 10.5061/dryad.1fm52vv.3/2.3
title: Supplementary Table 1 (Specimen collection numbers)

description: Supplementary Table 1. Table showing the stratigraphic distribution of Neognathodus specimens selected to test morphotype group affinities. Specimens were chosen between multiple stratigraphic boundaries. For example, to select the 30-specimen sample of N. bassleri, 27 N. bassleri specimens were chosen from the Perth Limestone Member, two were chosen from the Mecca Quarry Shale and Velpen Limestone members, and one was chosen from the Alum Cave Limestone Member. LS = limestone, SH = shale and Mbr = member. The number of specimens chosen from each unit is proportional to the total number of morphotype group occurrences in that unit.
DOI: 10.5061/dryad.1fm52vv.3/3.3
title: Supplementary Table 2 (Total occurrences of Neognathodus)

description: Supplementary Table 2. Summary table showing the number of occurrences of each Neognathodus morphotype group in all examined stratigraphic intervals. Data are compiled for six previous studies (Brown et al. 1991; Rexroad et al. 1996; Rexroad et al. 1998; Rexroad et al. 2001; Brown and Rexroad 2009; Brown et al. 2016).
DOI: 10.5061/dryad.1fm52vv.3/4.3
title: Systematic Paleontology

description: Systematic Paleontology section that official synonymizes Neognathodus the species pairs of N. medadultimus and N. medexultimus to N. medadultimus, and and N. dilatus and N.metanodosus to N. dilatus. This synonymy is based on our geometric morphometric results that show there is no statistically significant shape difference between the species pairs of N. medadultimus/N. medexultimus and between N. dilatus/N. metanodosus.
DOI: 10.5061/dryad.1fm52vv.3/5.3
title: Additional References for Systematic Paleontology

description: This document provides full references that are exclusively cited in the Systematic Paleontology section of this paper. These references were not cited in the main paper text, and therefore are not a part of the main reference list.
DOI: 10.5061/dryad.2p6m6nt/1
title: Supplemental data (Table e-1)

description: Review of the reported cases of Gerstmann-Straussler-Scheinker syndrome
DOI: 10.5061/dryad.2p6m6nt/2
title: Supplemental data (Table e-2)

description: MRI findings in patients with Gerstmann-Straussler-Scheinker syndrome
DOI: 10.5061/dryad.2p6m6nt/3
title: Supplemental data (e-References)

description: References of Table e-1 and Table e-2
DOI: 10.5061/dryad.2vg4cg1/1
title: Abrahao_et_al_2018_Plant_data_Cipo_J_Ecol

description: Plant traits recorded for 40 species, 4 individuals per species growing on 4 different soil types in campos rupestres and cerrado
DOI: 10.5061/dryad.42gp897/1
title: BeeSurv_MarkRecapture
DOI: 10.5061/dryad.42gp897/2
title: ResourceReturn
DOI: 10.5061/dryad.4c1246q/4
title: MASTER_analyses_III_R_file_movement_f

description: File containing the variables to analyse movement probability with a GLMM in R
DOI: 10.5061/dryad.4c1246q/5
title: main_ucp_model_script_21022018_seasonality_update_with_feedscans

description: R script to analyse variation in urinary C-peptide in a LMM
DOI: 10.5061/dryad.4c1246q/6
title: main_ucp_model_data_r_2018_seasonality_update_with_feed_scans

description: File containing the variables to analyse variation in urinary C-peptide using an LMM in R
DOI: 10.5061/dryad.51sd2p5/1
title: Reinforcement in Littoraria?

description: The data files covers four analyses: ABC modelling, gene flow, genital morphology and mating behaviour.
DOI: 10.5061/dryad.532c28n/1
title: Supplementary Table S1-3

description: Retrotransposon presence/absence patterns
DOI: 10.5061/dryad.532c28n/2
title: Supplementary Material File S1-3

description: Alignments of loci with retrotransposon presence/absence patterns
DOI: 10.5061/dryad.5p58q34/10
title: Zea_mays.OrthoFiner.SpeciesTree.nxs

description: Rooted species tree outputted by OrthoFinder
DOI: 10.5061/dryad.5p58q34/11
title: Zea_mays.OrthoFinder.SpeciesTree.node.labels.txt

description: Species node labels for the rooted species tree
DOI: 10.5061/dryad.5p58q34/12
title: Zea_mays.OrthoFinder.gene.trees.tar.gz

description: Zipped folder containing the trees for each orthologous and paralogous groups
DOI: 10.5061/dryad.5p58q34/13
title: Zea_mays.RNA-seq.libraries.xlsx

description: List of RNA-seq libraries analyzed
DOI: 10.5061/dryad.5p58q34/14
title: Zea_mays.MSU.FKPM.matrix.txt

description: FPKM matrix for AGPv4 genes
DOI: 10.5061/dryad.5p58q34/15
title: Zea_mays.MSU.FKPM.matrix.log2.flt1.txt

description: Log-2 transformed FPKM matrix of genes which had an FPKM &gt; 1 in at least one sample
DOI: 10.5061/dryad.5p58q34/7
title: Zea_mays.OrthoFinder.by.Zm.txt

description: Orthologous and paralogous groups identified by OrthoFinder listed by AGPv4 maize gene
DOI: 10.5061/dryad.5p58q34/8
title: Zea_mays.OrthoFinder.Statistics.Overall.csv

description: Table summary of the OrthoFinder overall results
DOI: 10.5061/dryad.5p58q34/9
title: Zea_mays.OrthoFinder.Statistics.PerSpecies.csv

description: Table summary of the OrthoFinder results per species
DOI: 10.5061/dryad.8k57d86/1
title: yi and vi values of meta-analysis

description: In this data file, yi means ln RR, vi means variances of log response ratio.
DOI: 10.5061/dryad.8rk23t4/1
title: Foraging experiment with two age classes of two stickleback ecotypes from the lake constance system

description: The data set contains individual information about the fish (e.g. sex, size, age), morphological (e.g. jaw protrusion, eye size, component traits) and performance measures (capture success of various prey items)
DOI: 10.5061/dryad.9519kj3/1
title: Electronic supplementary Material (Pérez et al.)

description: This file content the data, own tables and own figures from: Factors influencing organic carbon accumulation in mangrove ecosystems, Pérez Segovia, Alexander, G. Libardoni, Bruno, Sanders, Christian
DOI: 10.5061/dryad.9r3v1c3/1
title: Paramuricea biscaya reference transcriptome

description: Transcriptome assembly containing in situ preserved deep-sea octocorals; DWH spill impacted P. biscaya colonies and control P. biscaya colonies without visible signs of impact. mRNA library preparation was done via TruSeq RNA Library Preparation Kit at the University of Wisconsin-Madison Biotechnology Center and sequenced on an Illumina HiSeq2000 to produce 100 bp, paired-end reads. Reads were quality-assessed using FastQC and quality trimmed using Trimmomatic and Cutadapt (to remove adaptor sequences). Rcorrector and Jellyfish were used to error-correct reads. Kraken was used to remove bacterial, archaeal, and viral contamination. The remaining reads (&gt;60 bp) were normalized and assembled using Trinity v2.4.0. Assembled contigs were again run through Kraken and analyzed with Transdecoder to identify open-reading frames (ORFs) that were at least 100 amino acids long and to predict likely coding regions. This assembly only contains isoforms with the longest ORF per trinity gene. CD-HIT was then used to further educe redundancy of the transcripts (similarity threshold of 0.95). The assembly was then annotated using dammit.
DOI: 10.5061/dryad.9r3v1c3/2
title: Paramuricea_biscaya_assembly_annotations_dammit
DOI: 10.5061/dryad.dk73qp7/1
title: D. merriami genotypes

description: Microsatellites loci genotypes for the entire database (76 individuals)
DOI: 10.5061/dryad.dk73qp7/2
title: Flores-Manzanero_et_DmeNR-genotypes(59)

description: Microsatellites loci genotypes for the non-related individuals (59 )
DOI: 10.5061/dryad.fg6kt38/1
title: pembrolizumab_SE
DOI: 10.5061/dryad.hh42t4j/10
title: II.2P-3b
DOI: 10.5061/dryad.hh42t4j/11
title: II.2P-3c
DOI: 10.5061/dryad.hh42t4j/12
title: II.2P-4
DOI: 10.5061/dryad.hh42t4j/5
title: 2.2_Mobility
DOI: 10.5061/dryad.hh42t4j/6
title: II.2P-1
DOI: 10.5061/dryad.hh42t4j/7
title: II.2P-2
DOI: 10.5061/dryad.hh42t4j/8
title: II.2P-3
DOI: 10.5061/dryad.hh42t4j/9
title: II.2P-3a
DOI: 10.5061/dryad.k1s0c7h/1
title: List of females

description: Data about wild female house mice (Mus musculus domesticus) collected in a free-living population in Switzerland. Contains information about the date of birth and death (or disappearance from the population), as well as the population density and the mean monthly temperature during the month the females were born.
DOI: 10.5061/dryad.k1s0c7h/2
title: List of litters

description: List with litters born between 2007 and 2011 in a population of free-living house mice. If known, identity of the mother (assigned through genetic parentage analysis) is given, as well as a genetic LitterID, linking all pups born by the same female at the same time (litter mates).
DOI: 10.5061/dryad.k1s0c7h/3
title: Communal litters for reproductive skew analysis

description: List with communal litters (formed by two or more females), with the corresponding calculated Binomial skew index (B), the average pair-wise value of relatedness between the females (Wang estimate) and the maximal range of age differences between the females and pups within the communal litters.
DOI: 10.5061/dryad.k57430s/10
title: Aldaetal_SystBio_SupplMat

description: Supplementary Tables S1-S4, and Supplementary Figures S1-S16.
DOI: 10.5061/dryad.k57430s/5
title: gymno_reduced_dataset_min75_complete

description: Individual UCE loci alignments that are common to at least 75% of taxa in the reduced dataset of Gymnotiformes (1472 loci, 11 taxa). Name codes in README.txt.
DOI: 10.5061/dryad.k57430s/6
title: gymno_reduced_dataset_100_complete

description: Individual UCE loci alignments that are common to 100% of taxa in the reduced dataset of Gymnotiformes (368 loci, 11 taxa). Codes for individual names in README.
DOI: 10.5061/dryad.k57430s/7
title: gymno_full_dataset_min75_concatenated.nex

description: Concatenated matrix of UCE loci in common to at least 75% of taxa in the Gymnotiformes full dataset. Code names in README.txt.
DOI: 10.5061/dryad.k57430s/8
title: gymno_reduced_dataset_min75_concatenated

description: Concatenated matrix of UCE loci in common to at least 75% of taxa in the Gymnotiformes reduced dataset. Code names in README.txt.