cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7900273
title: Data for: Food Anticipatory Behaviour on European Seabass in Sea Cages: Activity-, Positioning- and Density-based approaches

description: Telemetry and sensory data data for: Food Anticipatory Behaviour on European Seabass in Sea Cages: Activity-, Positioning- and Density-based approaches Please read the README.txt file before working with the data.
description: This work was funded by the iFishIENCi project and has received funding from the European Union's Horizon 2020 research and innovation program under grant agreement No 818036 and the Norwegian Research Council, Project number 323300. If you use this dataset, please cite as below.
DOI: 10.5281/zenodo.7900274
title: Data for: Food Anticipatory Behaviour on European Seabass in Sea Cages: Activity-, Positioning- and Density-based approaches

description: Telemetry and sensory data data for: Food Anticipatory Behaviour on European Seabass in Sea Cages: Activity-, Positioning- and Density-based approaches Please read the README.txt file before working with the data.
description: This work was funded by the iFishIENCi project and has received funding from the European Union's Horizon 2020 research and innovation program under grant agreement No 818036 and the Norwegian Research Council, Project number 323300. If you use this dataset, please cite as below.
DOI: 10.5281/zenodo.8047710
title: A small dataset of short abstract from Wikipedia

description: This dataset has been collected during the ISWS2023 PhD School of Semantic Web at Bertinoro for the Project Work of the Dragon Team Research Group. It contains a collection of 10 short abstract taken from Wikipedia. The short abstract have been published in a date that is before the data of the pre-train of the gpt-3.5-turbo LLM so contains informations that are known by this model and can be useful to study the inference of triples in KG generation from texts process.
DOI: 10.5281/zenodo.8047709
title: A small dataset of short abstract from Wikipedia

description: This dataset has been collected during the ISWS2023 PhD School of Semantic Web at Bertinoro for the Project Work of the Dragon Team Research Group. It contains a collection of 10 short abstract taken from Wikipedia. The short abstract have been published in a date that is before the data of the pre-train of the gpt-3.5-turbo LLM so contains informations that are known by this model and can be useful to study the inference of triples in KG generation from texts process.
DOI: 10.5281/zenodo.8047662
title: PASS: A scoring system to evaluate persistent kidney injury in critically ill ICU adult patients

description: Acute Kidney Injury (AKI) and sepsis is highly prevalent in Intensive Care Units (ICU) and has direct effect on mortality and morbidity. We aimed to evaluate if course and recovery of sepsis-AKI can be predicted using variables collected at the time of admission, and to develop a formula - Persistent AKI Scoring System (PASS) to predict recovery. 63 consecutive patients admitted for sepsis-AKI in our ICUs were evaluated over a period of 8 months. Baseline demographic and clinical/laboratory parameters ,including serum creatinine (SCr), Base Excess (BE), Plethysmographic Variability Index (PVI), Caval Index, R wave Variability (RVI), Mean Arterial Pressure (MAP) and Renal Resistivity Index (RI) using renal doppler and need for inotropes were assessed on admission. Patients were managed with standard protocols with fluid resuscitation and other specific therapy. After 6 of hours of fluid resuscitation, hemodynamic status and volume status of the patient was assessed. Patients were classified as Volume Responders or Non-responders depending on hemodynamic stabilization using parameters like MAP. Re- assessment of all the variables was done at 24 hours and 72 hours after admission. The primary outcome was persistent AKI after 72hrs. The secondary outcome was initiation of dialysis and death within 15 days of admission. 34 subjects recovered from AKI. 32 patients showed volume response with respect to hemodynamic parameters and 31 patients were non-responders. Response to fluid, MAP at admission, MAP after 6 hours, BE at admission, inotrope requirement, and PVI at admission did not correlate with recovery of AKI. RI, RVI and S Cr at admission significantly correlated with recovery from AKI These 3 parameters were evaluated further to develop the model for predicting recovery from AKI.• Score&gt; 7.8 predicted recovery from AKI with sensitivity of 79.4%, specificity of 72.4%. PPV 81.8% and NPV 76.7%. PASS Score&gt;7.8 had AUROC of 0.85. Multiple logistic regression showed that SCr&lt; 2.36 mg%, RVI &gt; 14.45 and RI &lt; 0.8 on admission correlated with recovery. PASS SCORE Formula was created using the same. CONCLUSION: PASS score can be a simple bed side method to reliably identify salvageable cases of sepsis-AKI, guiding fluid resuscitation and also aiding early referrals from rural to higher centers for better management.
DOI: 10.5281/zenodo.8047661
title: PASS: A scoring system to evaluate persistent kidney injury in critically ill ICU adult patients

description: Acute Kidney Injury (AKI) and sepsis is highly prevalent in Intensive Care Units (ICU) and has direct effect on mortality and morbidity. We aimed to evaluate if course and recovery of sepsis-AKI can be predicted using variables collected at the time of admission, and to develop a formula - Persistent AKI Scoring System (PASS) to predict recovery. 63 consecutive patients admitted for sepsis-AKI in our ICUs were evaluated over a period of 8 months. Baseline demographic and clinical/laboratory parameters ,including serum creatinine (SCr), Base Excess (BE), Plethysmographic Variability Index (PVI), Caval Index, R wave Variability (RVI), Mean Arterial Pressure (MAP) and Renal Resistivity Index (RI) using renal doppler and need for inotropes were assessed on admission. Patients were managed with standard protocols with fluid resuscitation and other specific therapy. After 6 of hours of fluid resuscitation, hemodynamic status and volume status of the patient was assessed. Patients were classified as Volume Responders or Non-responders depending on hemodynamic stabilization using parameters like MAP. Re- assessment of all the variables was done at 24 hours and 72 hours after admission. The primary outcome was persistent AKI after 72hrs. The secondary outcome was initiation of dialysis and death within 15 days of admission. 34 subjects recovered from AKI. 32 patients showed volume response with respect to hemodynamic parameters and 31 patients were non-responders. Response to fluid, MAP at admission, MAP after 6 hours, BE at admission, inotrope requirement, and PVI at admission did not correlate with recovery of AKI. RI, RVI and S Cr at admission significantly correlated with recovery from AKI These 3 parameters were evaluated further to develop the model for predicting recovery from AKI.• Score&gt; 7.8 predicted recovery from AKI with sensitivity of 79.4%, specificity of 72.4%. PPV 81.8% and NPV 76.7%. PASS Score&gt;7.8 had AUROC of 0.85. Multiple logistic regression showed that SCr&lt; 2.36 mg%, RVI &gt; 14.45 and RI &lt; 0.8 on admission correlated with recovery. PASS SCORE Formula was created using the same. CONCLUSION: PASS score can be a simple bed side method to reliably identify salvageable cases of sepsis-AKI, guiding fluid resuscitation and also aiding early referrals from rural to higher centers for better management.
DOI: 10.5281/zenodo.8047771
title: OLAC Nightly Data Dump (XML) from 16 July 2020

description: Open Language Archive Community (OLAC) Nightly Data Dump (XML) from 16 July 2020. Downloaded on July 16th, therefore likely the nightly compiled on the 15th. OLAC <em>does</em> uniquely name the nightly downloads in their uncompressed form, but it does not persist them.
DOI: 10.5281/zenodo.8047770
title: OLAC Nightly Data Dump (XML) from 16 July 2020

description: Open Language Archive Community (OLAC) Nightly Data Dump (XML) from 16 July 2020. Downloaded on July 16th, therefore likely the nightly compiled on the 15th. OLAC <em>does</em> uniquely name the nightly downloads in their uncompressed form, but it does not persist them.
DOI: 10.34740/kaggle/dsv/5949048
title: Nigerian Presidential Election 2023 Tweets
DOI: 10.5281/zenodo.8047649
title: OLAC Nightly Data Dump (XML) from 25 Sept 2010

description: Open Language Archive Community (OLAC) Nightly Data Dump (XML) from 25 September 2010. Downloaded on September 25th, therefore likely the nightly compiled on the 24th. OLAC <em>does</em> uniquely name the nightly downloads in their uncompressed form, but it does not persist them.
DOI: 10.5281/zenodo.8047648
title: OLAC Nightly Data Dump (XML) from 25 Sept 2010

description: Open Language Archive Community (OLAC) Nightly Data Dump (XML) from 25 September 2010. Downloaded on September 25th, therefore likely the nightly compiled on the 24th. OLAC <em>does</em> uniquely name the nightly downloads in their uncompressed form, but it does not persist them.
DOI: 10.5281/zenodo.8047784
title: Map of the rate of elevation change of Mont-Blanc glaciers derived from Pléiades stereo-images

description: This collection contains three map of elevation changes derived form Pléiades images acquired in 2012, 2021 and 2022 over the Mont-Blanc Massif (Alps) with a horizontal grid spacing of 4 m. They were derived from stereo-pairs acquired 19 August 2012, 15 August 2021, 12 October 2022, 8 August 2022 and 5 October 2022. No data are indicated by the -9999 value. We generated 4-m DEMs from five Pléiades stereo-pairs using the semi-global matching algorithm of the Ames Stereo Pipeline (Beyer et al., 2018) and the set of parameters defined in Deschamps-Berger et al. (2020). The DEMs were first coregistered on stable terrain, masking out glacierized areas using a glacier inventory from year 2015 (Paul et al., 2020). Spatially-coherent biases in the elevation difference maps were next corrected using a polynomial fit across-track and a spline fit in the along-track direction (Falaschi et al., 2023). Pléiades stereo-images were obtained thanks to DINAMIS Project, for “Dispositif Institutionnel National d’Approvisionnement Mutualisé en Imagerie Satellitaire”, a French platform that acquires and distributes very high resolution Earth satellite imagery for French and foreign institutional users under specific subscription conditions.
DOI: 10.5281/zenodo.8047783
title: Map of the rate of elevation change of Mont-Blanc glaciers derived from Pléiades stereo-images

description: This collection contains three map of elevation changes derived form Pléiades images acquired in 2012, 2021 and 2022 over the Mont-Blanc Massif (Alps) with a horizontal grid spacing of 4 m. They were derived from stereo-pairs acquired 19 August 2012, 15 August 2021, 12 October 2022, 8 August 2022 and 5 October 2022. No data are indicated by the -9999 value. We generated 4-m DEMs from five Pléiades stereo-pairs using the semi-global matching algorithm of the Ames Stereo Pipeline (Beyer et al., 2018) and the set of parameters defined in Deschamps-Berger et al. (2020). The DEMs were first coregistered on stable terrain, masking out glacierized areas using a glacier inventory from year 2015 (Paul et al., 2020). Spatially-coherent biases in the elevation difference maps were next corrected using a polynomial fit across-track and a spline fit in the along-track direction (Falaschi et al., 2023). Pléiades stereo-images were obtained thanks to DINAMIS Project, for “Dispositif Institutionnel National d’Approvisionnement Mutualisé en Imagerie Satellitaire”, a French platform that acquires and distributes very high resolution Earth satellite imagery for French and foreign institutional users under specific subscription conditions.
DOI: 10.34740/kaggle/dsv/5949071
title: Mahanagar Yatayat Dataset
DOI: 10.5517/ccdc.csd.cc2dzxq1
title: CCDC 2234254: Experimental Crystal Structure Determination

description: Related Article: Colince Nde, Adam Bouraima, Bridget N. Ndosiri, Idelle N. Kamga, Ledoux S. Pouamo, Frédéric Capet, Michel Foulon, Justin Nenwa|2023|Polyhedron|241|116459|doi:10.1016/j.poly.2023.116459
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d7gw0
title: CCDC 2211722: Experimental Crystal Structure Determination

description: Related Article: Mehdi A. Beniddir, Adrien Jagora, Sarah Szwarc, Wassim Hafidi, Jean-François Gallard, Pascal Retailleau, Alexei V. Buevich, Pierre Le Pogam|2023|Phytochemistry|212|113741|doi:10.1016/j.phytochem.2023.113741
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.22730459.v3
title: Supplementary Information for "AI-assisted structural consensus-proteome prediction of human monkeypox viruses isolated within a year after the 2022 multi-country outbreak" containing Data S1-S5 and 3D structural models of the MPX consensus proteome (April2022 to April2023)

description: The monkeypox virus (MPX) belongs to the orthopoxvirus genus of the <em>Poxviridae</em> family, is endemic in parts of Africa, and causes a disease in humans similar to smallpox. The most recent outbreak of MPX is already affecting 110 countries with 86,956 confirmed cases since May 2022 and has consequently become a focus of interest. In particular, a molecular understanding of the virus is essential to study infection processes and pathogen-host interactions, predict tropism changes, or guide drug-development and -discovery as well as vaccine-development or -adaptation at a very early stage. Here we provide the structural proteome of the currently circulating MPX virus: We computed a consensus genome sequence from 3,713 viral isolates sampled during one year after the outbreak and predicted the structure of 210 proteins contained in this consensus genome with AlphaFold2 and ESMFold, as well as, for 148 proteins, which matched to proteins deposited in the PDB, with homology modeling. In total, 568 distinctive structural models are contained within the folder provided here.
DOI: 10.57830/2294654
title: Federal Listing Status of Taxa in National Park Service Units for Use in Determining Appropriate Release of Data (March 2023)
DOI: 10.57830/2272464
title: State, Territory, and NatureServe Listing Status of Taxa in National Park Service Units for use in Determining Appropriate Release of Data
DOI: 10.5281/zenodo.8047799
title: Prac_data

description: This is a data for testing
DOI: 10.5281/zenodo.8047798
title: Prac_data

description: This is a data for testing
DOI: 10.25345/c59s1kw1s
title: MassIVE MSV000092191 - PTP1B inhibition promotes cell death in hypoxia by triggering RNF213-dependent pyroptosis
title: The tumor microenvironment (TME) typically includes hypoxic regions. Hypoxic cancer cells are resistant to many anti-neoplastic therapies and can seed recurrence; consequently, understanding how they survive could yield new therapeutic strategies. In response to decreasing oxygen, cells are known to successively activate hypoxia-inducible factor 1-alpha (HIF1alpha), endoplasmic reticulum (ER) stress, and AMP-dependent protein kinase (AMPK). We previously identified an additional pathway in which the protein-tyrosine phosphatase PTP1B (encoded by PTPN1) prevents the death of HER2+ breast cancer cells exposed to severe hypoxia (O2&lt;1%) by inhibiting RNF213, a large (~600 kDa) E3 ubiquitin ligase containing two functional AAA-ATPase domains and two ubiquitin ligase domains (RING and RZ) that also is implicated in Moyamoya disease (MMD), lipotoxicity, and innate immunity. These findings provided a potential explanation for earlier observations that Ptpn1-/- mice are resistant to Neu (rodent HER2)-induced breast cancer, but how PTP1B regulates RNF213, the identity(ies) of RNF213 targets, the mechanism of cell death, and the relevance to other RNF213 actions remained unclear. Via proximity-based proteomics, we identified the CYLD-SPATA2 complex, a major negative regulator of NF-kappaB activation, as an RNF213 substrate critical for hypoxia-induced cell death. Here we show that PTP1B and ABL1/2 reciprocally control the phosphorylation of RNF213 on Tyrosine-1275. Phosphorylation of this site promotes RNF213 oligomerization, resulting in RZ domain activation, LUBAC complex-dependent ubiquitylation and degradation of the CYLD/SPATA2 deubiquitinase complex, and NF-kappaB activation. NF-kappaB induces NLRP3 inflammasome priming, and concomitant hypoxia-induced ER stress triggers inflammasome activation, resulting in pyroptotic cell death. Mutagenesis experiments show that the RNF213 RING negatively regulates the RZ domain, and RING domain mutants, including those associated with MMD, catalyze LUBAC-independent CYLD/SPATA2 degradation. Our results identify a novel PTP1B/RNF213/CYLD/SPATA2 pathway responsible for the pyroptotic death of hypoxic tumor cells, reveal new insights into RNF213 regulation, and have potentially important implications for the pathogenesis of MMD, atherosclerosis, and inflammatory and auto-immune disorders. The mass spectrometry raw files for the phosphorylation identification and proximity labeling results are included here.
DOI: 10.3886/e183284v2
title: DEMOSPA1520

description: This database (named DEMOSPA1520) is composed of fourteen datasets: a group of (monthly and daily moving averages) datasets derived from population stocks and a collection of (daily, monthly and quarterly) datasets obtained from population, death, migration and birth statistics
description: Response Rates: NA
description: datasets derived from population stocks and a collection of datasets obtained from population, death, migration and birth statistics.
description: other; 325 million demographic records from Spain, corresponding to a period of six years (2015-2020)
DOI: 10.3886/e183284v1
title: DEMOSPA1520

description: This database (named DEMOSPA1520) is composed of fourteen datasets: a group of (monthly and daily moving averages) datasets derived from population stocks and a collection of (daily, monthly and quarterly) datasets obtained from population, death, migration and birth statistics
description: Response Rates: NA
description: datasets derived from population stocks and a collection of datasets obtained from population, death, migration and birth statistics.
description: other; 325 million demographic records from Spain, corresponding to a period of six years (2015-2020)
DOI: 10.6084/m9.figshare.22630897.v1
title: Multi-omic features of oesophageal adenocarcinoma in patients treated with preoperative neoadjuvant therapy

description: Data Tables are the Supplementary Data for the paper: Multi-omic features of oesophageal adenocarcinoma in patients treated with preoperative neoadjuvant therapy by Naeini et al.
DOI: 10.6084/m9.figshare.22630897
title: Multi-omic features of oesophageal adenocarcinoma in patients treated with preoperative neoadjuvant therapy

description: Data Tables are the Supplementary Data for the paper: Multi-omic features of oesophageal adenocarcinoma in patients treated with preoperative neoadjuvant therapy by Naeini et al.
DOI: 10.6084/m9.figshare.22634641.v1
title: Point-of-care based design of liposome-anchored teriparatide incorporated gallic acid-grafted gelatin injectable hydrogel for osteoarthritis treatment

description: Source data are provided with this paper.
DOI: 10.6084/m9.figshare.22634641
title: Point-of-care based design of liposome-anchored teriparatide incorporated gallic acid-grafted gelatin injectable hydrogel for osteoarthritis treatment

description: Source data are provided with this paper.
DOI: 10.6084/m9.figshare.22685107.v1
title: Machine Learning-Assisted Crystal Engineering of a Zeolite

description: Source Date file is provided here, the relevant raw data from each figure or table (in the main manuscript and in the Supplementary Information) are represented by a single sheet in the Excel document. Codes applied for machine learning are also provided in the zip folder.
DOI: 10.6084/m9.figshare.22685107
title: Machine Learning-Assisted Crystal Engineering of a Zeolite

description: Source Date file is provided here, the relevant raw data from each figure or table (in the main manuscript and in the Supplementary Information) are represented by a single sheet in the Excel document. Codes applied for machine learning are also provided in the zip folder.
DOI: 10.34740/kaggle/dsv/4653922
title: datasetntu
DOI: 10.34740/kaggle/ds/2703374
title: datasetntu
DOI: 10.5281/zenodo.7993252
title: Questionnaire-Raw

description: This includes all data from the questionnaire - excluding the questionnaire itself.
DOI: 10.5281/zenodo.7993251
title: Questionnaire-Raw

description: This includes all data from the questionnaire - excluding the questionnaire itself.
DOI: 10.34740/kaggle/ds/2767829
title: datasetntu1
DOI: 10.6084/m9.figshare.23274569
title: <strong>Testis-specific gene </strong><em><strong>C7orf61 </strong></em><strong>is involved in mouse sperm–egg fusion</strong>

description: The present study aimed to investigate the expression of chromosome 7 open reading frame 61 (<em>C7orf61</em>) in the testis and determine its role in spermatogenesis. Reverse transcription–quantitative polymerase chain reaction, Western blot and immunofluorescence were performed to evaluate the expression characteristics of <em>C7orf61</em> in mice and humans. <em>In vitro </em>fertilization assay was used to determine the role of the C7ORF61 protein in sperm-egg fusion. The results demonstrated that <em>C7orf61</em> was a testis-specific gene; the <em>C7ofr61</em> mRNA expression level sharply increased in the fourth postnatal week and gradually increased until the adult stage. The C7ORF61 protein was located throughout the subacrosomal area and close to the nucleus in both mouse and human sperm. The incubation with the C7ORF61 antibody significantly decreased the fertilization rate of mouse eggs. The present findings suggested that the C7ORF61 protein might be involved in sperm–egg fusion, and could serve as a useful target for contraceptives. However, further research is still needed to know the detailed molecular mechanism of its role.
DOI: 10.6084/m9.figshare.23274569.v1
title: <strong>Testis-specific gene </strong><em><strong>C7orf61 </strong></em><strong>is involved in mouse sperm–egg fusion</strong>

description: The present study aimed to investigate the expression of chromosome 7 open reading frame 61 (<em>C7orf61</em>) in the testis and determine its role in spermatogenesis. Reverse transcription–quantitative polymerase chain reaction, Western blot and immunofluorescence were performed to evaluate the expression characteristics of <em>C7orf61</em> in mice and humans. <em>In vitro </em>fertilization assay was used to determine the role of the C7ORF61 protein in sperm-egg fusion. The results demonstrated that <em>C7orf61</em> was a testis-specific gene; the <em>C7ofr61</em> mRNA expression level sharply increased in the fourth postnatal week and gradually increased until the adult stage. The C7ORF61 protein was located throughout the subacrosomal area and close to the nucleus in both mouse and human sperm. The incubation with the C7ORF61 antibody significantly decreased the fertilization rate of mouse eggs. The present findings suggested that the C7ORF61 protein might be involved in sperm–egg fusion, and could serve as a useful target for contraceptives. However, further research is still needed to know the detailed molecular mechanism of its role.