cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-536304311
title: Structural Biology of Macromolecules and Macromolecular complexes from India

description: Structural biology research groups located in India constitute the INDIA-BAG and will utilize MX, SAXS and CryoEM to study different biological macromolecules. Together, these groups address multiple pathways in animals, plants, bacteria and fungi. These studies will provide fundamental mechanistic insight regarding different processes critical for the survival and propagation of the relevant organism. Many groups in the BAG study proteins from pathogens to identify novel intervention points that can be the targeted with small molecule inhibitors to inhibit the growth of the corresponding infectious agents. There are more than 50 groups that are part of this BAG and the allocated beamtime will be available for over 500 young researchers. A brief description of all the research groups is provided in the global summary and a summary of the research contributions involving data collected at ESRF is provided in the last BAG report.
DOI: 10.15151/esrf-es-541058143
title: The Israeli BAG

description: The BAG includes numerous principal investigators which are the majority of structural biologists in Israel. The scientific topics are diverse and so different that depicting them in a short Abstract is extremely difficult. In this context BAG members are studying the parameters that govern protein assemblage, structural impacts of signaling processes in different cascades, Thermodynamics of proteolytic reaction. In addition, we have the ribosome project and the design of unique antibiotics with specific functional interactions from the mycinamycins family and their resistance related mechanism compared with other macrolides and the photosystem and how it converts light into energy. The current events promote several Covid-19 related projects but BAG members are and have been involved and virus infection and inhibitory strategies including Hepatitis C virus, arthropod borne viruses (e.g .dengue, West Nile, Zika, Israel Turkey Meningoencephalitis), chikungunya virus and more.
DOI: 10.15151/esrf-es-541153238
title: Structure of metalloproteins, membrane proteins, filamentous sarcomer proteins, and virus particles

description: Our work focusses on biological nitrogen fixation by Nitrogenase, on metalloenzymes and integral membrane proteins of bacterial and archaeal respiratory systems (Andrade/Einsle/Wohlwend), the working mechanism and regulation of medically relevant membrane proteins and complexes and their defects leading to pathologies (Hunte), bacterial antibiotic resistance factors and viral and bacterial proteins bound to their targets or inhibitors, and their interactions with glycans (Stehle), human S100 proteins involved in nutritional immunity, USP18 enforcing the endogenous antiviral interferon response, and the respiratory complex NQR of V. cholerae (Fritz), LDL lipoprotein particles with low resolution data collection and phasing to find envelopes of parts of membrane proteins escaping conventional methods (Baumstark/Lunin), and on multi-domain components of the sarcomeric filamentous protein titin and their binding to the E3 ubiquitin ligase MuRF1 and the central myosin rod-domain (Mayans).
DOI: 10.15151/esrf-es-542594533
title: Austrian Crystallographic Diffraction Consortium

description: This proposed Austrian Crystallographic Diffraction Consortium (ACDC) BAG is to support various macromolecular structural biology groups across Austria (totally 15 research groups at 8 institutions in 5 cities). We employ mainly the technique of X-ray crystallography to characterize macromolecular biological complexes. Approval of this BAG will be absolutely essential for researchers in all these groups to carry out their structural studies on various health-related subjects, which are targeted at characterizing large molecular assemblies or proteins currently under-represented in the PDB, including membrane proteins. Corresponding high-resolution diffraction data are only obtainable through the use of synchrotron radiation sources. Thus regular synchrotron access is highly desirable to maintain a competitive advantage in our individual research fields.
DOI: 10.15151/esrf-es-632025980
title: Operando investigation of cobalt oxide NPs reduction.

description: We will measure the reduction of cobalt oxide NPs to metallic cobalt NPs in H2 atmosphere at 300 C.
DOI: 10.5517/ccdc.csd.cc23rlzg
title: CCDC 1959106: Experimental Crystal Structure Determination

description: Related Article: Sebastian Y. Quek, Suman Debnath, Shoba Laxmi, Maurice van Gastel, Tobias Krämer, Jason England|2021|J.Am.Chem.Soc.|143|19731|doi:10.1021/jacs.1c07837
DOI: 10.6084/m9.figshare.17109305
title: Full-length transcriptome of Tanichthys albonubesFull-length transcriptome

description: Using Pacbio sequence method to sequence full-length transcriptome of Tanichthys albonubes, which lack the reference genome sequence in public dataset. this project including our corrected sequence and annotation result including NR, GO, KEGG, KOG, eggNOG and Swissprot for functional annotation and CDS, TF, SSR and lncRNA for structural annotation.
DOI: 10.6084/m9.figshare.17109305.v3
title: Full-length transcriptome of Tanichthys albonubesFull-length transcriptome

description: Using Pacbio sequence method to sequence full-length transcriptome of Tanichthys albonubes, which lack the reference genome sequence in public dataset. this project including our corrected sequence and annotation result including NR, GO, KEGG, KOG, eggNOG and Swissprot for functional annotation and CDS, TF, SSR and lncRNA for structural annotation.
DOI: 10.6084/m9.figshare.17109305.v2
title: Full-length transcriptome of Tanichthys albonubesFull-length transcriptome

description: Using Pacbio sequence method to sequence full-length transcriptome of Tanichthys albonubes, which lack the reference genome sequence in public dataset. this project including our corrected sequence and annotation result including NR, GO, KEGG, KOG, eggNOG and Swissprot for functional annotation and CDS, TF, SSR and lncRNA for structural annotation.
DOI: 10.5281/zenodo.5749131
title: Dataset: Systematic Literature Review on the Development and Application of Sentiment Analysis Tools in Software Engineering

description: In 2020, we conducted a systematic literature review to explore the development and application of sentiment analysis tools in software engineering. Information on the execution of the SLR, its scope, the search string, etc. are presented in the paper linked below. The updated version contains the results of one more snowballing iteration and extracted information on the accuracy of the used methods.
DOI: 10.34740/kaggle/dsv/2873933
title: Guitar Transcription Dataset
DOI: 10.26188/17111081
title: Supp_Table_3

description: Table showing rel abundance of bacterial groups identified as unusual suspects
DOI: 10.26188/17111081.v1
title: Supp_Table_3

description: Table showing rel abundance of bacterial groups identified as unusual suspects
DOI: 10.26188/17111084
title: ASV-table_&lt;10rem_clr

description: ASV table
DOI: 10.26188/17111084.v1
title: ASV-table_&lt;10rem_clr

description: ASV table
DOI: 10.26188/17111087.v1
title: metadata

description: metadata table
DOI: 10.26188/17111087
title: metadata

description: metadata table
DOI: 10.26188/17111093
title: ampvis_ASVtable&lt;10rem_clr

description: ampvis2 ASV table
DOI: 10.26188/17111093.v1
title: ampvis_ASVtable&lt;10rem_clr

description: ampvis2 ASV table
DOI: 10.26188/17111102.v1
title: ampvis2_metadata

description: ampvis2 metadata
DOI: 10.26188/17111102
title: ampvis2_metadata

description: ampvis2 metadata
DOI: 10.5281/zenodo.5749097
title: CAMSRA_Surface_O3

description: This data is downloaded from CDS and it is produced by ECMWF with the name of CAMS global reanalysis (EAC4). Generated using Copernicus Climate Change Service information 2021 Neither the European Commission nor ECMWF is responsible for any use that may be made of the Copernicus information or data it contains.
DOI: 10.5281/zenodo.5749096
title: CAMSRA_Surface_O3

description: This data is downloaded from CDS and it is produced by ECMWF with the name of CAMS global reanalysis (EAC4). Generated using Copernicus Climate Change Service information 2021 Neither the European Commission nor ECMWF is responsible for any use that may be made of the Copernicus information or data it contains.
DOI: 10.14457/cu.the.2013.1977
title: Edge-Odd Graceful Labelings of some prisms and some Prism-Like Graph
DOI: 10.14457/cu.the.2013.1978
title: Synthesis and characterization of active functional copolymers of N-isopropylacrylamide
DOI: 10.14457/cu.the.2013.1979
title: Determination of noncovalent interactions of PNA/DNA by electrospray mass spectrometry
DOI: 10.25442/hku.17075168
title: The dataset for the thesis "Biomechanics and Mechanomedicine in the Vascular System"

description: The dataset includes the qPCR data in xlsx format, fluorescence data in tif format, AFM and Optical tweezers force-distance curve data in txt format, Western blotting data in tif format, transwell assay data in tif format, wound healing data in tif format, SEM data in tif format, XRD data in txt format, TGA data in txt format, HPLC data in xlsx format. The data is analyzed by origin 7.0 and GraphPad Prism 7.0. The picture is analyzed by Image J 5.0.
DOI: 10.25442/hku.17075168.v1
title: The dataset for the thesis "Biomechanics and Mechanomedicine in the Vascular System"

description: The dataset includes the qPCR data in xlsx format, fluorescence data in tif format, AFM and Optical tweezers force-distance curve data in txt format, Western blotting data in tif format, transwell assay data in tif format, wound healing data in tif format, SEM data in tif format, XRD data in txt format, TGA data in txt format, HPLC data in xlsx format. The data is analyzed by origin 7.0 and GraphPad Prism 7.0. The picture is analyzed by Image J 5.0.
DOI: 10.6084/m9.figshare.16618138
title: PRE_viral_contigs_95-80.fna

description: PRE_viral_contigs_95-80.fna: Viral populations based on 95% nucleotide identity and 80% of the genome coverage criterion
DOI: 10.6084/m9.figshare.16618138.v2
title: PRE_viral_contigs_95-80.fna

description: PRE_viral_contigs_95-80.fna: Viral populations based on 95% nucleotide identity and 80% of the genome coverage criterion
DOI: 10.6084/m9.figshare.16618138.v1
title: PRE_viral_contigs_95-80.fna

description: PRE_viral_contigs_95-80.fna: Viral populations based on 95% nucleotide identity and 80% of the genome coverage criterion
DOI: 10.25442/hku.17080736
title: Supporting data for “Protective Effects of Some Flavonoid Derivatives against Acrolein and Glycidol-induced Toxicities in Endothelial Cells

description: This dataset serves as supporting information for the thesis “Protective Effects of Some Flavonoid Derivatives against Acrolein and Glycidol-induced Toxicities in Endothelial Cells”, Acrolein and glycidyl esters are lipid-derived toxicants that widely occur in processed foods. Toxicological evaluation of acrolein and glycidol was conducted in vivo using human umbilical vein endothelial cells (HUVECs). In addition, a series of flavonoid derivatives, stilbenoid-fused naringenin, were synthesized and screened for their protective efficacy. The data includes statistical analysis from flow cytometry, immunoblot assay, ELISA, qRT-PCR results in HUVECs.
DOI: 10.25442/hku.17080736.v1
title: Supporting data for “Protective Effects of Some Flavonoid Derivatives against Acrolein and Glycidol-induced Toxicities in Endothelial Cells

description: This dataset serves as supporting information for the thesis “Protective Effects of Some Flavonoid Derivatives against Acrolein and Glycidol-induced Toxicities in Endothelial Cells”, Acrolein and glycidyl esters are lipid-derived toxicants that widely occur in processed foods. Toxicological evaluation of acrolein and glycidol was conducted in vivo using human umbilical vein endothelial cells (HUVECs). In addition, a series of flavonoid derivatives, stilbenoid-fused naringenin, were synthesized and screened for their protective efficacy. The data includes statistical analysis from flow cytometry, immunoblot assay, ELISA, qRT-PCR results in HUVECs.
DOI: 10.6084/m9.figshare.17111129
title: Supplementary Material for: Effects of Long Noncoding RNA H19 on Isoflurane-Induced Cognitive Dysregulation by Promoting Neuroinflammation

description: <b><i>Introduction:</i></b> Isoflurane (ISO) may cause neuronal apoptosis and synaptic disorder during development, and damage long-term learning and memory function. This observation aimed to study the function of H19 in vitro and in vivo tests and the further mechanism was identified. <b><i>Methods:</i></b> ISO cell models and rat models were established and reactive oxygen species (ROS) identified. The viability and apoptosis of HT22 cells were detected by the MTT and flow cytometer. Morris water maze test was conducted to analyze the neurotoxicity of ISO on spatial learning and memory ability. Quantitative PCR was the method to verify the expression of H19. The concentration of inflammatory indicators was identified by enzyme-linked immunosorbent assay. <b><i>Results:</i></b> 1.5% and 2% ISO led to the neurotoxicity of HT22 cells and increased expression of H19. Silenced H19 meliorated these adverse impacts of ISO. Interference of H19 exerted neuroprotective roles by repressing modified neurological severity score, inhibiting escape latency, elevating distance and time of target area, and controlling ROS and inflammation. MiR-17-5p might be a promising competing endogenous RNA of H19. The expression of miR-17-5p was reduced in the ISO group and reversed by the absence of H19. <b><i>Conclusion:</i></b> Our results of in vitro and in vivo assay indicated that the absence of HT22 is a neuroprotective regulator of cognition and inflammation by accumulating miR-17-5p.
DOI: 10.25442/hku.17082461
title: Supporting data for “Design and Motion Control of Multi-segment Continuum Robots”

description: This Dataset files are the main resource materials for Chapter 2 (design analysis and optimization) and Chapter 3 (motion control based on self-learning) in my PhD thesis. The first sub-folder is about the comparison experiments on two different groups of multi-segment continuum robots, revealing how structure parameters affect the kinematic performances of continuum robots in terms of workspace and dexterity. The second sub-folder is about the construction of deep reinforcement learning framework to realize the model-free control of multi-segment continuum robots. In addition, case study and comparative analysis on a two-segment continuum robot is included.
DOI: 10.25442/hku.17082461.v1
title: Supporting data for “Design and Motion Control of Multi-segment Continuum Robots”

description: This Dataset files are the main resource materials for Chapter 2 (design analysis and optimization) and Chapter 3 (motion control based on self-learning) in my PhD thesis. The first sub-folder is about the comparison experiments on two different groups of multi-segment continuum robots, revealing how structure parameters affect the kinematic performances of continuum robots in terms of workspace and dexterity. The second sub-folder is about the construction of deep reinforcement learning framework to realize the model-free control of multi-segment continuum robots. In addition, case study and comparative analysis on a two-segment continuum robot is included.
DOI: 10.5281/zenodo.5749165
title: msd-errors - Data for AgCrSe2 figures

description: Data for the figures Results of the analysis of AgCrSe2 systems by kinisi at a series of temperatures.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5749166
title: msd-errors - Data for the LLZO figure

description: Data for the figure showing the diffusion and Arrhenius plots for a short simulation of LLZO. <br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5749152
title: data and code for the funding prediction task

description: data and code for the funding prediction task
DOI: 10.5281/zenodo.5749151
title: data and code for the funding prediction task

description: data and code for the funding prediction task
DOI: 10.3886/e155881v1
title: Executive Control Functions and Theory of Mind among Plurilingual Adults

description: The present study examined the effect of language status on executive control functions (EF) and Theory of Mind (ToM) among plurilingual adults after controlling the effect of mental ability. The findings indicate that two language dominant plurilinguals outperformed one language dominant plurilinguals on Stroop, card sorting, and ToM tasks after controlling for mental ability. It suggests that dominance of two languages substantially enhances a person’s executive control functions and mental state reasoning, which is over and above the influence of mental ability.
DOI: 10.5281/zenodo.5581210
title: Data and materials for "Crystallization kinetics of atomic crystals revealed by a single-shot and single-particle X-ray diffraction experiment"

description: XFEL diffraction data and simulation codes associated with publication "Crystallization kinetics of atomic crystals revealed by a single-shot and single-particle X-ray diffraction experiment" (https://doi.org/10.1073/pnas.2111747118). Fig1A.txt is the 2D array data of the accumulated diffraction image. Fig2A.txt, Fig2B.txt, Fig2C.txt are the 2D arrays of the single-shot diffraction images. The unit is electronvolt per pixel. Python script.ipynb includes the simulation codes for the single-shot streak patterns and the integrated powder diffraction pattern.
DOI: 10.5281/zenodo.5581209
title: Data and materials for "Crystallization kinetics of atomic crystals revealed by a single-shot and single-particle X-ray diffraction experiment"

description: XFEL diffraction data and simulation codes associated with publication "Crystallization kinetics of atomic crystals revealed by a single-shot and single-particle X-ray diffraction experiment" (https://doi.org/10.1073/pnas.2111747118). Fig1A.txt is the 2D array data of the accumulated diffraction image. Fig2A.txt, Fig2B.txt, Fig2C.txt are the 2D arrays of the single-shot diffraction images. The unit is electronvolt per pixel. Python script.ipynb includes the simulation codes for the single-shot streak patterns and the integrated powder diffraction pattern.
DOI: 10.6084/m9.figshare.17111096
title: suppl Table.pdf

description: This table indicates Average nucleotide identity (ANI) and digital DNA–DNA hybridization (dDDH) values for <i>Bacillus</i> sp. strain HT18 compared to the <i>Bacillus cereus</i> group strains.
DOI: 10.6084/m9.figshare.17111096.v1
title: suppl Table.pdf

description: This table indicates Average nucleotide identity (ANI) and digital DNA–DNA hybridization (dDDH) values for <i>Bacillus</i> sp. strain HT18 compared to the <i>Bacillus cereus</i> group strains.
DOI: 10.25721/xxt6-k977
title: La belle épicière
DOI: 10.5517/ccdc.csd.cc26w2hp
title: CCDC 2051812: Experimental Crystal Structure Determination

description: Related Article: Lin-Wei Wang, Yu-Feng Feng, Hong-Min Lin, Hai-Tao Tang, Ying-Ming Pan|2021|J.Org.Chem.|86|16121|doi:10.1021/acs.joc.1c00012
DOI: 10.5517/ccdc.csd.cc289ny6
title: CCDC 2094668: Experimental Crystal Structure Determination

description: Related Article: SUMAN DEBNATH|2021|CSD Communication|||
description: Related Article: Sebastian Y. Quek, Suman Debnath, Shoba Laxmi, Maurice van Gastel, Tobias Krämer, Jason England|2021|J.Am.Chem.Soc.|143|19731|doi:10.1021/jacs.1c07837
DOI: 10.5517/ccdc.csd.cc289mbk
title: CCDC 2094618: Experimental Crystal Structure Determination

description: Related Article: Sebastian Y. Quek, Suman Debnath, Shoba Laxmi, Maurice van Gastel, Tobias Krämer, Jason England|2021|J.Am.Chem.Soc.|143|19731|doi:10.1021/jacs.1c07837
description: Related Article: SUMAN DEBNATH|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28mfp1
title: CCDC 2104053: Experimental Crystal Structure Determination

description: Related Article: Dana-Céline Krause, Sebastian Mangelsen, Christian Näther, Wolfgang Bensch|2021|Cryst.Growth Des.|21|7128|doi:10.1021/acs.cgd.1c01006
DOI: 10.5517/ccdc.csd.cc28mfq2
title: CCDC 2104054: Experimental Crystal Structure Determination

description: Related Article: Dana-Céline Krause, Sebastian Mangelsen, Christian Näther, Wolfgang Bensch|2021|Cryst.Growth Des.|21|7128|doi:10.1021/acs.cgd.1c01006
DOI: 10.5517/ccdc.csd.cc28mfr3
title: CCDC 2104055: Experimental Crystal Structure Determination

description: Related Article: Dana-Céline Krause, Sebastian Mangelsen, Christian Näther, Wolfgang Bensch|2021|Cryst.Growth Des.|21|7128|doi:10.1021/acs.cgd.1c01006
DOI: 10.6084/m9.figshare.16802182
title: Research data on length variation patterns in invertebrate mitochondrial genomes

description: The dataset contains information on the study of the complete mitochondrial genome of the Baikal freshwater amphipod <i>Macrohectopus branicki</i>i. The study analyzes the distribution of the lengths of mitochondrial genomes of different groups of invertebrates in comparison with the length of the mitochondrial genome of <i>Macrohectopus branickii</i>. Description of all data is contained in the Data_description.docx file.<br>
DOI: 10.6084/m9.figshare.16802182.v5
title: Research data on length variation patterns in invertebrate mitochondrial genomes

description: The dataset contains information on the study of the complete mitochondrial genome of the Baikal freshwater amphipod <i>Macrohectopus branicki</i>i. The study analyzes the distribution of the lengths of mitochondrial genomes of different groups of invertebrates in comparison with the length of the mitochondrial genome of <i>Macrohectopus branickii</i>. Description of all data is contained in the Data_description.docx file.<br>
DOI: 10.6084/m9.figshare.16802182.v4
title: Research data on length variation patterns in invertebrate mitochondrial genomes

description: The dataset contains information on the study of the complete mitochondrial genome of the Baikal freshwater amphipod <i>Macrohectopus branicki</i>i. The study analyzes the distribution of the lengths of mitochondrial genomes of different groups of invertebrates in comparison with the length of the mitochondrial genome of <i>Macrohectopus branickii</i>. Description of all data is contained in the Data_description.docx file.<br>
DOI: 10.6084/m9.figshare.17111132
title: Grain size component, relief & hillslope angle along the upper Min River

description: The data include grain size component, relief and hillslope angle along the upper Min River, eastern Tibet
DOI: 10.6084/m9.figshare.17111132.v1
title: Grain size component, relief & hillslope angle along the upper Min River

description: The data include grain size component, relief and hillslope angle along the upper Min River, eastern Tibet
DOI: 10.5281/zenodo.5749170
title: msd-errors - Random walk data

description: The data related to the random walk components of the msd-error work, including truly random and temporarily anti-correlated random walks at a series of system and step size. These have either be analysed numerically or analytically (using kinisi).<br><br>Created using showyourwork from this GitHub repo.