cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2b34d0
title: CCDC 2147971: Experimental Crystal Structure Determination

description: Related Article: Iryna Andrusenko, Joseph Hitchen, Enrico Mugnaioli, Jason Potticary, Simon R. Hall, Mauro Gemmi|2022|Symmetry|14|431|doi:10.3390/sym14030431
description: Related Article: Joseph Hitchen|2022|Thesis|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b35j5
title: CCDC 2148006: Experimental Crystal Structure Determination

description: Related Article: Iryna Andrusenko, Joseph Hitchen, Enrico Mugnaioli, Jason Potticary, Simon R. Hall, Mauro Gemmi|2022|Symmetry|14|431|doi:10.3390/sym14030431
description: Related Article: Joseph Hitchen|2022|Thesis|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.8161356
title: Variable Stoichiometry Effects on Glacial/Interglacial Ocean Model Biogeochemical Cycles and Carbon Storage - MODEL OUTPUT

description: This is the repository for the model output and controls pertaining to the simulation experiments performed in "Variable Stoichiometry Effects on Glacial/Interglacial Ocean Model Biogeochemical Cycles and Carbon Storage" by Nathaniel Fillman, Andreas Schmittner, and Karin Kvale. Citation and DOI for parent publication will be updated here when available.<br> See https://github.com/fillmann/variable-stoichiometry for model code.
DOI: 10.5281/zenodo.8161355
title: Variable Stoichiometry Effects on Glacial/Interglacial Ocean Model Biogeochemical Cycles and Carbon Storage - MODEL OUTPUT

description: This is the repository for the model output and controls pertaining to the simulation experiments performed in "Variable Stoichiometry Effects on Glacial/Interglacial Ocean Model Biogeochemical Cycles and Carbon Storage" by Nathaniel Fillman, Andreas Schmittner, and Karin Kvale. Citation and DOI for parent publication will be updated here when available.<br> See https://github.com/fillmann/variable-stoichiometry for model code.
DOI: 10.5281/zenodo.8022007
title: Use of Aloe Vera in Quilombo Communities -artigo em construção

description: <em>Aloe vera</em> is a succulent plant known as babosa. Many people use This plant in traditional medicine for its therapeutic properties. This study aims to investigate the use of Aloe vera in quilombola communities in northeastern Brazil, focusing on the forms of use and therapeutic applications. To this end, a systematic search of scientific databases was conducted to identify relevant studies on the therapeutic use of aloe vera.
DOI: 10.5281/zenodo.8022008
title: Use of Aloe Vera in Quilombo Communities -artigo em construção

description: <em>Aloe vera</em> is a succulent plant known as babosa. Many people use This plant in traditional medicine for its therapeutic properties. This study aims to investigate the use of Aloe vera in quilombola communities in northeastern Brazil, focusing on the forms of use and therapeutic applications. To this end, a systematic search of scientific databases was conducted to identify relevant studies on the therapeutic use of aloe vera.
DOI: 10.6084/m9.figshare.23737677
title: Polarisation of Decayless Kink Oscillations of Solar Coronal Loops

description: Data and codes for set up geometrical model for 3D oscillating loop and their projections on different plane of sky, considering 5 types of polarisation. The make_loopdatacube.pro generates oscillating coronal loop, in 3D space, with different types of polarisation, see '*_R15_data.sav' for the results. The code loop_projection.pro generates 2D images which are projection of 3D loop based on two viewing line of sight (LoS), see the resulting datasets 'Projected_data_*_AIALoS*.sav' for AIA LoS, and 'Projected_data_*_HRILoS*.sav' for HRI LoS.
DOI: 10.6084/m9.figshare.23737677.v1
title: Polarisation of Decayless Kink Oscillations of Solar Coronal Loops

description: Data and codes for set up geometrical model for 3D oscillating loop and their projections on different plane of sky, considering 5 types of polarisation. The make_loopdatacube.pro generates oscillating coronal loop, in 3D space, with different types of polarisation, see '*_R15_data.sav' for the results. The code loop_projection.pro generates 2D images which are projection of 3D loop based on two viewing line of sight (LoS), see the resulting datasets 'Projected_data_*_AIALoS*.sav' for AIA LoS, and 'Projected_data_*_HRILoS*.sav' for HRI LoS.
DOI: 10.6084/m9.figshare.23737662
title: June - August Ensemble Mean and Standard Deviation Antarctic Sea Ice Concentration Reconstruction, 1905- 2020

description: Ensemble mean and standard deviation across the 100+ ensemble members for Seasonal Antarctic sea ice concentration reconstructions, 1905-2020, for June - Auguest season (JJA). Data are gridded on the 25x25km polar stereographic projection, like sea ice data from NSIDC.
DOI: 10.6084/m9.figshare.23737662.v1
title: June - August Ensemble Mean and Standard Deviation Antarctic Sea Ice Concentration Reconstruction, 1905- 2020

description: Ensemble mean and standard deviation across the 100+ ensemble members for Seasonal Antarctic sea ice concentration reconstructions, 1905-2020, for June - Auguest season (JJA). Data are gridded on the 25x25km polar stereographic projection, like sea ice data from NSIDC.
DOI: 10.6084/m9.figshare.23737671
title: Gene models for <em>Drosophila ananassae</em>, <em>Drosophila bipectinata</em>, <em>Drosophila kikkawai</em>, and <em>Drosophila takahashii</em>

description: These files are gene annotations for the genome assemblies described in the forthcoming publication <em>Long-read genome assemblies for the study of chromosome expansion: Drosophila kikkawai, Drosophila takahashii, Drosophila bipectinata, and Drosophila ananassae. </em> <br> RefSeq gene models from <em>D. kikkawai</em>, <em>D. takahashii</em>, <em>D. bipectinata</em>, and <em>D. ananassae </em>were aligned against the corresponding Hi-C genome assembly using BLAT with the following parameters q=rna -fine -minScore=20 -stepSize=5. The transcript alignments were analyzed by pslReps with the parameters -minCover=0.15 -minAli=0.98 -nearTop=0.001, and then filtered by pslCDnaFIlter with the parameters -minId=0.95 -minCover=0.15 -localNearBest=0.001 -minQSize=20 -ignoreIntrons -repsAsMatch -ignoreNs -bestOverlap.
DOI: 10.5066/p9r1v41q
title: Attributed California Water Supply Well Completion Report Data for Selected Areas, Derived from CA WCR OSCWR Data (ver. 2.0, January 2023)

description: This Well Completion Report geospatial dataset represents an index to a subset of records available from the California Department of Water Resources' (DWR) Online System for Well Completion Reports (OSWCR). This release contains water supply well records from Amador, Calaveras, El Dorado, Nevada, Placer, Sacramento, San Bernardino, Sutter, and Yuba counties. The USGS California Water Science Center GAMA project has provided additional attributes: top of open interval; number of open intervals; and various other identifiers such as public supply well number and USGS site number where they can be identified. In some cases, locations are georeferenced to finer resolution based on county APN or 911 geospatial datasets. The attributed information is linked to the redacted publicly available image when the link can be resolved. This dataset is for information purposes only. All attribute values should be verified by reviewing the original Well Completion Report. California Water Code Section 13752 allows for the release of redacted copies of well completion reports to the public. DWR is the authoritative source of these data. https://data.ca.gov/dataset/well-completion-reports.
DOI: 10.6084/m9.figshare.23737644
title: December - February Ensemble Mean and Standard Deviation Antarctic Sea Ice Concentration Reconstruction, 1905-2020

description: Ensemble mean and standard deviation across the 100+ ensemble members for Seasonal Antarctic sea ice concentration reconstructions, 1905-2020, for December-February season (DJF). Data are gridded on the 25x25km polar stereographic projection, like sea ice data from NSIDC.
DOI: 10.6084/m9.figshare.23737644.v1
title: December - February Ensemble Mean and Standard Deviation Antarctic Sea Ice Concentration Reconstruction, 1905-2020

description: Ensemble mean and standard deviation across the 100+ ensemble members for Seasonal Antarctic sea ice concentration reconstructions, 1905-2020, for December-February season (DJF). Data are gridded on the 25x25km polar stereographic projection, like sea ice data from NSIDC.
DOI: 10.6084/m9.figshare.23737653
title: March - May Ensemble Mean and Standard Deviation Antarctic Sea Ice Concentration Reconstruction, 1905-2020

description: Ensemble mean and standard deviation across the 100+ ensemble members for Seasonal Antarctic sea ice concentration reconstructions, 1905-2020, for March-May season (MAM). Data are gridded on the 25x25km polar stereographic projection, like sea ice data from NSIDC.
DOI: 10.6084/m9.figshare.23737653.v1
title: March - May Ensemble Mean and Standard Deviation Antarctic Sea Ice Concentration Reconstruction, 1905-2020

description: Ensemble mean and standard deviation across the 100+ ensemble members for Seasonal Antarctic sea ice concentration reconstructions, 1905-2020, for March-May season (MAM). Data are gridded on the 25x25km polar stereographic projection, like sea ice data from NSIDC.
DOI: 10.5281/zenodo.8179254
title: Computer Code and Data - Determination of server location in emergency care systems: an index proposal using Data Envelopment Analysis and the Hypercube Queuing Model

description: Computer code and data related to the research project "Determination of server location in emergency care systems: an index proposal using Data Envelopment Analysis and the Hypercube Queuing Model".
DOI: 10.5281/zenodo.8179253
title: Computer Code and Data - Determination of server location in emergency care systems: an index proposal using Data Envelopment Analysis and the Hypercube Queuing Model

description: Computer code and data related to the research project "Determination of server location in emergency care systems: an index proposal using Data Envelopment Analysis and the Hypercube Queuing Model".
DOI: 10.23645/epacomptox.23736972.v1
title: Manuscript (mcf7)

description: Data files for an "mcf7" manuscript. <br> Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.23645/epacomptox.23736972
title: Exploring the Effects of Experimental Parameters and Data Modeling Approaches on In Vitro Transcriptomic Point-of-Departure Estimates

description: Data files for an "mcf7" manuscript. <br> Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.23645/epacomptox.23736972.v3
title: Exploring the Effects of Experimental Parameters and Data Modeling Approaches on In Vitro Transcriptomic Point-of-Departure Estimates

description: Data files for an "mcf7" manuscript. <br> Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.23645/epacomptox.23736972.v2
title: <em>Exploring the Effects of Experimental Parameters and Data Modeling Approaches on In Vitro Transcriptomic Point-of-Departure Estimates</em>

description: Data files for an "mcf7" manuscript. <br> Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.6084/m9.figshare.22802816
title: Supplemental materials for "Diploid and triploid chinook salmon (<em>Oncorhynchus tshawytscha</em>) have altered microRNA responses in immune tissues after infection with <em>Vibrio</em> <em>anguillarum</em> "

description: Supplemental files for study investigating the impact of <em>Vibrio</em> <em>anguillarum</em> infection on diploid and triploid Chinook salmon (<em>Oncorhynchus tshawytscha</em>) was investigated to identify if there was any significant immune regulation by microRNAs (miRNA). Small RNAs from hindgut (hg), head kidney (hk), and spleen (sp) were sequenced to determine if miRNA transcript abundance was altered due to ploidy and infection in nine-month old full-sibling diploids and triploids. MiARma-seq and bowtie1 were utilized to align reads to the Chinook salmon genome, and then read abundance associated with miRNA genes quantified using FeatureCounts. Read counts were then analyzed using DESeq2 to identify differentially expressed miRNA between ploidies as well as after infection in all three tissues. Finally, targets of differentially expressed miRNA were predicted using miRanda and pathway impacts predicted using KEGG analysis. <br> Files included: <strong>run_log.log</strong> - miARma-seq logfiles for hindgut (hg), head kidney (hk), and spleen (sp) <strong>stats.log</strong> - miARma-seq stats information for hindgut (hg), head kidney (hk), and spleen (sp) <strong>miarma.cadonic.known.tshawyt.sample.ini</strong> - initiation file for miARma-seq which includes all parameters that were utilized to analyze raw reads <strong>deseq2_cadonic_sample.R</strong> - sample of R code for DEseq2 used to identify differentially expressed miRNA genes <strong>Sasa_Ensembl_3UTR_clean.fasta </strong>- File of 3' untranslated region (UTR) for annotated genes in Ensembl biomart (Ensembl release 105) that was analyzed with miRanda (version v3.3a) to predict miRNA-mRNA relationships. Sequences with unavailable UTRs were cleaned by replacing empty spaces with N using "sed -e '/^[^&gt;]/s/[^ATGC]/N/g' Sasa_Ensembl_3UTR.txt &gt; Sasa_Ensembl_3UTR_clean.fasta". <strong>cadonic_2023_Bioinformatics_protocol_extended.docx - </strong>Extended explanation for the bioinformatic steps and justification for the workflow used in the study.
DOI: 10.6084/m9.figshare.22802816.v1
title: Supplemental materials for "Diploid and triploid chinook salmon (<em>Oncorhynchus tshawytscha</em>) have altered microRNA responses in immune tissues after infection with <em>Vibrio</em> <em>anguillarum</em> "

description: Supplemental files for study investigating the impact of <em>Vibrio</em> <em>anguillarum</em> infection on diploid and triploid Chinook salmon (<em>Oncorhynchus tshawytscha</em>) was investigated to identify if there was any significant immune regulation by microRNAs (miRNA). Small RNAs from hindgut (hg), head kidney (hk), and spleen (sp) were sequenced to determine if miRNA transcript abundance was altered due to ploidy and infection in nine-month old full-sibling diploids and triploids. MiARma-seq and bowtie1 were utilized to align reads to the Chinook salmon genome, and then read abundance associated with miRNA genes quantified using FeatureCounts. Read counts were then analyzed using DESeq2 to identify differentially expressed miRNA between ploidies as well as after infection in all three tissues. Finally, targets of differentially expressed miRNA were predicted using miRanda and pathway impacts predicted using KEGG analysis. <br> Files included: <strong>run_log.log</strong> - miARma-seq logfiles for hindgut (hg), head kidney (hk), and spleen (sp) <strong>stats.log</strong> - miARma-seq stats information for hindgut (hg), head kidney (hk), and spleen (sp) <strong>miarma.cadonic.known.tshawyt.sample.ini</strong> - initiation file for miARma-seq which includes all parameters that were utilized to analyze raw reads <strong>deseq2_cadonic_sample.R</strong> - sample of R code for DEseq2 used to identify differentially expressed miRNA genes <strong>Sasa_Ensembl_3UTR_clean.fasta </strong>- File of 3' untranslated region (UTR) for annotated genes in Ensembl biomart (Ensembl release 105) that was analyzed with miRanda (version v3.3a) to predict miRNA-mRNA relationships. Sequences with unavailable UTRs were cleaned by replacing empty spaces with N using "sed -e '/^[^&gt;]/s/[^ATGC]/N/g' Sasa_Ensembl_3UTR.txt &gt; Sasa_Ensembl_3UTR_clean.fasta".
DOI: 10.5281/zenodo.8179289
title: Metadata for prey choice in insectivorous steppe passerines Paper

description: This dataset comprises metadata which corresponds to a paper prepared for submission entitled "Prey choice in insectivorous steppe passerines: new insights from DNA metabarcoding". Sample identifiers are given for faecal samples collected from shrub-steppe passerines at the province of Soria, Spain. Information such as location, date of collection, sex and other data are supplied.
DOI: 10.5281/zenodo.8179288
title: Metadata for prey choice in insectivorous steppe passerines Paper

description: This dataset comprises metadata which corresponds to a paper prepared for submission entitled "Prey choice in insectivorous steppe passerines: new insights from DNA metabarcoding". Sample identifiers are given for faecal samples collected from shrub-steppe passerines at the province of Soria, Spain. Information such as location, date of collection, sex and other data are supplied.
DOI: 10.25390/caryinstitute.23729466.v1
title: Changes in the distribution of freshwater mussels (Unionidae) in the upper Susquehanna River basin, 1955-1997

description: These data describe the freshwater mussel (Unionidae) communities and environmental conditions in streams and rivers of the Susquehanna River basin in New York State in 1996-1997.
DOI: 10.25390/caryinstitute.23729466
title: Changes in the distribution of freshwater mussels (Unionidae) in the upper Susquehanna River basin, 1955-1997

description: These data describe the freshwater mussel (Unionidae) communities and environmental conditions in streams and rivers of the Susquehanna River basin in New York State in 1996-1997.
DOI: 10.5517/ccdc.csd.cc27gyzn
title: CCDC 2069962: Experimental Crystal Structure Determination

description: Related Article: Yuya Ashida, Takuro Mizushima, Kazuya Arashiba, Akihito Egi, Hiromasa Tanaka, Kazunari Yoshizawa, Yoshiaki Nishibayashi|2023|Nat. Synth.|2|635|doi:10.1038/s44160-023-00292-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27gz0q
title: CCDC 2069963: Experimental Crystal Structure Determination

description: Related Article: Yuya Ashida, Takuro Mizushima, Kazuya Arashiba, Akihito Egi, Hiromasa Tanaka, Kazunari Yoshizawa, Yoshiaki Nishibayashi|2023|Nat. Synth.|2|635|doi:10.1038/s44160-023-00292-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27gz1r
title: CCDC 2069964: Experimental Crystal Structure Determination

description: Related Article: Yuya Ashida, Takuro Mizushima, Kazuya Arashiba, Akihito Egi, Hiromasa Tanaka, Kazunari Yoshizawa, Yoshiaki Nishibayashi|2023|Nat. Synth.|2|635|doi:10.1038/s44160-023-00292-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27gz2s
title: CCDC 2069965: Experimental Crystal Structure Determination

description: Related Article: Yuya Ashida, Takuro Mizushima, Kazuya Arashiba, Akihito Egi, Hiromasa Tanaka, Kazunari Yoshizawa, Yoshiaki Nishibayashi|2023|Nat. Synth.|2|635|doi:10.1038/s44160-023-00292-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27gz3t
title: CCDC 2069966: Experimental Crystal Structure Determination

description: Related Article: Yuya Ashida, Takuro Mizushima, Kazuya Arashiba, Akihito Egi, Hiromasa Tanaka, Kazunari Yoshizawa, Yoshiaki Nishibayashi|2023|Nat. Synth.|2|635|doi:10.1038/s44160-023-00292-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27gz4v
title: CCDC 2069967: Experimental Crystal Structure Determination

description: Related Article: Yuya Ashida, Takuro Mizushima, Kazuya Arashiba, Akihito Egi, Hiromasa Tanaka, Kazunari Yoshizawa, Yoshiaki Nishibayashi|2023|Nat. Synth.|2|635|doi:10.1038/s44160-023-00292-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27gz5w
title: CCDC 2069968: Experimental Crystal Structure Determination

description: Related Article: Yuya Ashida, Takuro Mizushima, Kazuya Arashiba, Akihito Egi, Hiromasa Tanaka, Kazunari Yoshizawa, Yoshiaki Nishibayashi|2023|Nat. Synth.|2|635|doi:10.1038/s44160-023-00292-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.