cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.16773
title: Research data supporting "Engineering the Photoresponse of InAs Nanowires"

description: Raw data from the figures in "Engineering the Photoresponse of InAs Nanowires". InAs nanowires were grown by metal–organic chemical vapor deposition (MOCVD). The growth conditions were chosen to grow wurtzite crystal structures with minimal stacking faults, minimal tapering, and hexagonal cross sections with {11̅00} side facets, as confirmed by transmission electron microscopy (TEM). The nanowire diameter was tightly controlled by selecting the diameter of the Au catalyst. Nanowire diameters, inclusive of surface oxide, of 30 ± 5 nm, 40 ± 5 nm, 65 ± 5 nm, and 110 ± 5 nm, respectively, were obtained, as confirmed by SEM. For TEM measurements, nanowires were mechanically transferred to a holey carbon grid. TEM was performed using a JEOL 2100F instrument operated at 200 keV. The nanowires were transferred to a doped Si wafer with 300 nm of thermally grown SiO2 which served as a global back gate. Contacts with a separation of 1 μm were patterned using e-beam lithography and sputter deposition of 70 nm Ni, followed by lift-off. To obtain low contact resistivity, prior to Ni deposition, the contact region of the nanowire was etched in 2% aqueous (NH4)2S solution at 40 °C for 10 min. Electrical measurements were carried out using a probe station connected to a Keithley 4200-SCS semiconductor characterization system. Illumination of the samples to measure the photoresponse was applied using a 3200 K halogen lamp with a power density of 30 mW cm–2. All measurements were carried out at room temperature under ambient conditions unless otherwise specified. For ALD passivation, after device fabrication, a 90 nm capping layer of Al2O3 was deposited using a Cambridge NanoTech ALD system at 120 °C using trimethylaluminum and H2O precursors. The probe pads were then exposed by etching through the Al2O3 with phosphoric acid.
DOI: 10.6084/m9.figshare.c.3623402_d3
title: Additional file 1. of A multiobjective approach for identifying protein complexes and studying their association in multiple disorders

description: The human proteinâ  protein interaction data.
DOI: 10.17863/cam.94561
title: GP Driven DBP

description: 1) Waveforms.zip containing waveforms generated from experiments : This dataset contains 30 sample waveforms generated from the experimental system of a wavelength division multiplexing (WDM) optical network link. This link is with 4 channels, of 1000 km length, of 64GBd symbol rate and 64 QAM modulation format. They are in the format of ".mat" and can be viewed with Matlab. $$ \ $$2) sim_results.zip containing simulation results from the proposed Gaussian process (GP) driven digital backpropagation (DBP) approach : This dataset contains the resultant data generated from the simulations which are then used to generate the plots in the paper. Data files with respect to signal to noise ratio (SNR) data are represented in “.mat” format and can be accessed with Matlab while the other data files are in the format of “.pkl” and can be opened using Python language “pickle” module. The trained GP models are also stored in “.pkl” format and can be accessed as described above.$$ \ $$3) DBP_GP_data.zip containing all source files and remaining data: These files contain the source codes related to this work including GP implementation, DBP simulation and history matching. Sources are written in Python programming language and can be executed with any Python environment. Additionally, this contains datasets generated from the optimisation process in “.mat” format. See the main manuscript for more details.
DOI: 10.6084/m9.figshare.c.3623387_d7
title: Additional file 15: of Insights into the human mesenchymal stromal/stem cell identity through integrative transcriptomic profiling

description: Functional enrichment analysis of the genes corresponding to the sets that are found overexpressed in the contrasts of each tissue-MSC subtype versus other mesenchymal/stromal subtypes. These gene lists are: 281 genes for AD-MSCs, and 412 genes for BM-MSCs and 531 genes for PL-MSCs. The file includes three tables with the data obtained with the DAVID functional enrichment tool. Each table includes the most relevant functional terms with significant p-values. (XLSX 68 kb)
DOI: 10.6084/m9.figshare.c.3623387_d8
title: Additional file 9: of Insights into the human mesenchymal stromal/stem cell identity through integrative transcriptomic profiling

description: List of 489 protein coding genes included in the mesenchymal lineage signature produced in this work. The table provides the gene symbols, ENSEMBL identifiers (IDs), corresponding UniProt IDs, protein names and description, as well as UniProt protein families and keywords. The proteins that are known CD markers (CDs) or transcription factors (TFs) are also indicated. (XLSX 129 kb)
DOI: 10.17863/cam.10554
title: Research data supporting "Influence of building characteristics on tunnelling-induced ground movements"

description: Raw data supporting figures of the associated paper. The data was acquired during centrifuge tests.
DOI: 10.17863/cam.48465
title: Dataset for 'A three-dimensional hybrid electrode with electroactive microbes for efficient electrogenesis and chemical synthesis'

description: The dataset contains raw data supporting the article ‘A three-dimensional hybrid electrode with electroactive microbes for efficient electrogenesis and chemical synthesis’’. An inverse opal-indium tin oxide (IO-ITO) was developed as a highly efficient electrode material for microbial electricity production and chemical synthesis. The dataset is divided into four key parts: Echem: Contains electro/photo chemical data for IO-ITO, BiVO4, dye sensitized TiO2 and graphene oxide (GO) reduction (origin files), Microscopy: Contains SEM, FIB-SEM, AFM and confocal images of bacteria, IO-ITO, BiVO4 photoanode and dye sensitized TIO2 (png and tif files), Protein quantification: Contains data for protein quantified from electrode attached bacteria (origin file), RNA Seq: Contains data for RNA extraction and gene expression analyses. The RNA sequencing and data analysis was conducted by Cambridge Genomic Services (csv files). For more details about experimental procedure, instrumentation, and data collection, see the manuscript.
DOI: 10.17863/cam.40399
title: Raw Data supporting article: Protein film electrochemical EPR spectroscopy as a technique to investigate redox reactions in biomolecules

description: See the file 'Metadata' for a detailed description of the dataset. The research project these data have originated from, the research and data collection methods, and results of the research project are described in: Kaltum Abdiaziz, Enrico Salvadori, Katarzyna P. Sokol, Erwin Reisner, Maxie M. Roessler, Chemical Communications, 2019. Methods: Electron paramagnetic resonance spectroscopy, protein film electrochemistry, electrochemical impedance spectroscopy, UV-Vis spectroscopy.
DOI: 10.15468/dl.urjebb
title: Occurrence Download

description: A dataset containing 3074 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cymodocea nodosa (Ucria) Asch."
 ]
}

 The dataset includes 3074 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033216-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3623411_d10
title: Additional file 3: of Elusive ditrysian phylogeny: an account of combining systematized morphology with molecular data (Lepidoptera)

description: Gene summary. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3623435_d1
title: Additional file 1: Figure S1. of 
                     MicroRNA-183 suppresses cancer stem-like cell properties in EBV-associated nasopharyngeal carcinoma

description: (A) List of miRNAs downregulated in C666-1 sphere-forming cells as detected by microarray analysis. (B) Selected miRNA expressions in sphere-forming and parental C666-1 cells were detected by qRT-PCR analysis. Significant downregulation of miR-200a, miR-96, miR-183, and miR-203 expression was found in the nasopharyngeal carcinoma cancer stem-like cells. Student’s t-test was used to determine statistical significance between the two groups (n = 3, **P
DOI: 10.6084/m9.figshare.c.3623438_d1
title: Additional file 4: of Applications and limitations of Centers for Disease Control and Prevention miniature light traps for measuring biting densities of African malaria vector populations: a pooled-analysis of 13 comparisons with human landing catches

description: Sample data.
DOI: 10.6084/m9.figshare.c.3623411_d11
title: Additional file 6: of Elusive ditrysian phylogeny: an account of combining systematized morphology with molecular data (Lepidoptera)

description: Character matrix. (TXT 218 kb)
DOI: 10.6084/m9.figshare.c.3623411_d12
title: Additional file 2: of Elusive ditrysian phylogeny: an account of combining systematized morphology with molecular data (Lepidoptera)

description: Sequence lengths. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3623411_d13
title: Additional file 1: of Elusive ditrysian phylogeny: an account of combining systematized morphology with molecular data (Lepidoptera)

description: List of exemplar taxa in study. (XLS 224 kb)
DOI: 10.17863/cam.111357
title: Data repository for "Graphene phase modulators operating in the transparency regime"

description: Data repository consists of four folder, containing: 1) Optoelectronic modelling of graphene double single-layer graphene modulators. The equivalent electrical circuit is modelled as a simple low-pass RC filter using Matlab, and the results can be accessed as .txt files and in Origin Lab (.opj). The results contain the frequency response of modulators as a function of graphene mobility. Optical simulations were performed with Lumerical. Results are saved as .opj file and can be accessed in Origin Lab. 2) Raman spectroscopy of as-grown graphene and transferred graphene between fabrication steps. We used a Renishaw InVia spectrometer equipped with 50x objective at 514.5 nm wavelength, with a resolution of 1/cm. The collected spectra, together with the extrapolated residual doping, carrier density, doping type and strain, are saved as .opj files and can be accessed in Origin Lab. 3) Static and dynamic frequency response of graphene modulators. Static (DC) response was measured on a probe station equipped with DC electrical probes and optical fibres. Electrical probes were connected to a source-measure unit from Keysight, while fibres were connected to tuneable lasers from Keysight operating at 1550 nm. The frequency response was measured using a RF signal generator (50 GHz), RF Infinity probes (40 GHz) and a InGaAs photodiode (Newport, 45 GHz) connected to an electrical spectrum analyzer. The setup was calibrated, and the results are saved in a file titled "Calibration-BW-20Hz-Span-20kHz-2019-08-01--14_48_48.txt". The bandwidth can be extracted by subtracting the calibration file from the remaining files in the "BW" folder. All files are saved as .txt files and can be visualized with the preferred plotting tool. 4) Static response of graphene Mach-Zehnder modulators. The setup used is the same as the one described in 3). The extinction ratio, insertion loss and wavelength shift as a function of gate voltage are recorded and saved as .txt files. Hence, they can be visualized with the preferred plotting tool.
DOI: 10.6084/m9.figshare.c.3623438_d3
title: Additional file 3: of Applications and limitations of Centers for Disease Control and Prevention miniature light traps for measuring biting densities of African malaria vector populations: a pooled-analysis of 13 comparisons with human landing catches

description: R script.
DOI: 10.17863/cam.9623
title: Dataset for "Strategies for managing rival bacterial communities: lessons from burying beetles"

description: OTU table for bacterial communities in carcasses under different treatments: fresh, beetle-prepared, and manually buried; and for bacterial communities in beetles guts and exudates. qPCR data set to estimate bacterial load in carcasses under different treatments.
DOI: 10.17863/cam.43444
title: Data supporting "Simple study designs in ecology produce inaccurate estimates of biodiversity responses"

description: A zip file containing an .R script with R code to run simulations and a .csv file containing data to load into R to run simulation. This data was extracted from 47 ecological studies and characterises the change in control and impact sites, as well as differences between these sites before an impact occurred, as per detailed methodology in the paper Christie et al. (2019). Data is also present in another .csv file showing results of when the accuracy weights presented in the paper Christie et al. (2019) were used to rerun the results of several meta analyses. We compare the results obtained from these accuracy weights with those obtained by using inverse variance. There is also a .txt file containing a link to a shiny app that will allow the calculation of accuracy weights based on Christie et al. (2019).
DOI: 10.17863/cam.43879
title: Research data supporting "Strain mediated bending of InP nanowires through the growth of an asymmetric InAs shell"

description: This data set includes a complete COMSOL simulation file, for the bending of a tapered InP/InAs core-shell structure. Also the manual curvature analysis of a nanowire, based on its TEM is shown.
DOI: 10.17863/cam.31550
title: Chrysophyte plastid evolution dataset

description: This upload contains phylogenetic data, protein sequence libraries, and supporting tables pertaining to the comparative evolutionary analysis of plastid proteome content in photosynthetic and non-photosynthetic chrysophyte algae.
DOI: 10.17863/cam.18837
title: Research data supporting "α-Ga2O3 grown by low temperature atomic layer deposition on sapphire"

description: Figure 1. (a) 2θ-ω scan recorded around the α-Al2O3 0006 reflection. Rocking curve ω scans recorded on the (b) α-Ga2O3 0006 and (c) α-Ga2O3 10-14 reflections. RSMs around the (d) α-Al2O3 0006 and (e) α-Al2O3 10-110 reflections. Figure 2. (a) ADF-STEM and (b) HR-TEM image of the sample observed along the α-Al2O3 〈11-20〉 zone-axis. In inset, ABSF-filtered (average background subtraction filter) image of the interface region indicated with a square in (b). Figure 3. SED of the Ga2O3 film observed near the α-Al2O3 〈11-20〉 zone-axis. (a) Composite diffraction contrast image formed plotting the intensity of selected reflections as a function of probe position. Green corresponds to reflections in the α-Ga2O3 〈11-20〉 zone-axis pattern and red corresponds to additional reflections identified in the data. Inset shows the intensity of the direct beam revealing the full extent of the film including non-diffracting components. Representative diffraction patterns (b) from the α-Ga2O3 columns, (c-d) from the tips which are most likely ε-Ga2O3.
DOI: 10.17863/cam.55512
title: Research data supporting "Photoacoustic imaging resolves species-specific differences in haemoglobin concentration and oxygenation"

description: These data sets contain raw data (.xlsx format) and analysis code (.m and .ipynb format) supporting the publication "Photoacoustic imaging resolves species-specific differences in haemoglobin concentration and oxygenation". The data sets include a detailed guidance document on the data collection and analysis methodology.
DOI: 10.17863/cam.65278
title: Filter pack and cascade impactor samples of gas and aerosol particulate matter on the Island of Hawai'i (2018, 2019)

description: This dataset reports chemical speciation of airborne gas and aerosol particulate matter (PM) sampled in various locations on the Island of Hawai'i in 2018 and 2019. The 2018 samples were collected during a large eruption of Kilauea volcano. The 2019 samples were collected during a period of very low volcanic activity. Samples were collected in several locations on the Island of Hawai'i, Hawaii, USA. Time-series samples were collected at -Leilani Estates -Volcano village -Pahala, Ocean View -Kailua-Kona -Mauna Loa Observatory in 2018 and 2019. Point-source samples were collected at the following locations -The main erupting vent 'Fissure 8' on the Kilauea Volcano in 2018, and repeated in its vicinity post-eruption in 2019 - The lava ocean entry point in 2018 and repeated in its vicinity post-eruption in 2019. The samples were collected using filter packs (FP) and Sioutas cascade impactors (SKC). The instruments were used at ground-level in all cases except for samples FP_08_1, FP_ 09_1, FP_09_2, SKC_08 and SKC_09 which were attached to an Unoccupied Aircraft System (UAS) in order to safely access the erupting vent and the lava ocean entry. The samples were then analysed using inductively-coupled plasma mass spectroscopy (ICP-MS), inductively-coupled plasma optical emission spectroscopy (ICP-OES) and ion chromatography (IC). Sample analysis was done at the University of Leeds, United Kingdom (2018 samples) and the University of Leeds and Open University, United Kingdom (2019 samples). The results are reported as concentration per volume of air sampled (µg/m^3) to 2 significant figures. This was done to - assess the dispersion of major and trace elements in a volcanic plume, and quantify their depletion rates from the source into the far-field (up to ~240 km downwind) - assess the impact of volcanic emissions on the composition of the local atmosphere. The data were produced as a result of a collaborative project between the Universities of Leeds, Cambridge, Oxford (UK), Hawaiian Volcano Observatory of the United States Geological Survey, and the University of Hawai'i at Manoa (USA).
DOI: 10.17863/cam.87875
title: Research data supporting "Unveil the unseen: exploit information hidden in noise"

description: The datasets are training sets (file names ending with _train.csv) and validation sets (file names ending with _validate.csv). The machine learning algorithm is trained on the data in a _train.csv file and validated against the data in the corresponding _validate.csv file. The first column of each file is the input variable. The second column is the available values for the intermediate target variable. The last column of each file is the values of the final target variable. The extrapolation_using_Y training and validation sets are used to validate the ability of the machine learning algorithm to perform extrapolation using intermediate target variable. The sinosoidal_noise training and validation sets are used to validate the ability of the machine learning algorithm to perform extrapolation using uncertainty in the intermediate target variable. The phase_transition and droplet_diffraction training and validation files contain the experimental data for the real-world physical examples that we applied the methodology to.
DOI: 10.15468/dl.2cmt88
title: Occurrence Download

description: A dataset containing 346 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyalolaena Bunge"
 ]
}

 The dataset includes 346 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033217-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.55983
title: Data supporting publication "Measurement invariance, construct replicability, and factor representation of longitudinal bifactor models: review and application based on the p factor"

description: There are two data files supporting the empirical example used in this publication. The first includes raw items from all three NSPN waves used to generate the bifactor model reported in the paper, and test measurement invariance over gender and across waves. The second file includes the factor loadings from the gender modified model performed separately at each wave.
DOI: 10.6084/m9.figshare.c.3623468_d7
title: Additional file 2: Table S2. of Characterization of the cytokinin-responsive transcriptome in rice

description: Rice RNA-Seq gene expression values in RPKM. (XLSX 13Â kb)
DOI: 10.15468/dl.p5mx69
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((41.80777 -27.8821,53.14544 -27.8821,53.14544 -10.87558,41.80777 -10.87558,41.80777 -27.8821))",
 "TaxonKey is Mantella aurantiaca Mocquard, 1900"
 ]
}

 The dataset includes 56 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033218-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3623468_d8
title: Additional file 1: Table S1. of Characterization of the cytokinin-responsive transcriptome in rice

description: Number of rice RNA-Seq reads mapping to genes by library. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3623468_d9
title: Additional file 10: Table S9. of Characterization of the cytokinin-responsive transcriptome in rice

description: MapMan categories and DE genes from shoots. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3623468_d10
title: Additional file 6: Table S6. of Characterization of the cytokinin-responsive transcriptome in rice

description: Genes that were DE in roots and shoots in the same direction. (XLSX 419Â kb)
DOI: 10.6084/m9.figshare.c.3623507_d1
title: Additional file 2 of Fast and accurate dynamic estimation of field effectiveness of meningococcal vaccines

description: England population data. England population in 1999 and 2014 by age. (6 KB XLSX)
DOI: 10.23729/f98cce89-a44c-425f-9b73-f591561ce70c
title: Input and output data for the first PALM-SLUrb v24.04 evaluation

description: The repository contains input and output data for simulations evaluation PALM-SLUrb model version 24.04. The corresponding job generation and analysis codes are stored at https://doi.org/10.5281/zenodo.14335750. The data directory should be placed or linked to the root of the analysis code directory in order to reproduce the analysis. The model code as used in the evaluation is stored at https://doi.org/10.5281/zenodo.14221083.

Raw and interim data used in the job generation are stored in the directories "raw" and "interim" respectively. The PALM model input and output data are stored individually for each job under the "job" directory, following PALM naming standards.

Both input and output binary files are given in a standard netCDF4 data format.

The output file names have the following pattern: jobname_otype(_av).cyclenum.nc, where jobname is the name of the job, otype is the output type suffix "_av" signifying a temporally averaged output and cyclenum being the number of the restart cycle. The following output types are present:
3d: three dimensional volume data
ts: time series data
pr: profile data
topo_surf: surface representation output
surf: surface output
xy: xy cross section
xz: xz cross section
yz: yz cross section

The dataset contains modified European Union's Copernicus Land Monitoring Service and Copernicus Climate Change Service information 2020. Neither the European Commission nor ECMWF is responsible for any use that may be made of the Copernicus information or data it contains.
DOI: 10.6084/m9.figshare.c.3623507_d2
title: Additional file 3 of Fast and accurate dynamic estimation of field effectiveness of meningococcal vaccines

description: Meningococcal carriage data. Distribution of meningococcal carriage by age in Europe. (6 KB XLSX)
DOI: 10.6084/m9.figshare.c.3623516_d1
title: Additional file 1: of Efficacy of cryotherapy for the treatment of cutaneous leishmaniasis: meta-analyses of clinical trials

description: Meta-analysis of per patient efficacy of cryotherapy compared to pentavalent antimonials (intent to treat). (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3623510_d3
title: Additional file 4: of Haemodiafiltration elicits less platelet activation compared to haemodialysis

description: Raw data of the study. (XLSX 32 kb)