cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22811384.v5
title: Guppy and M. picta repeats_annotation

description: The dataset was produced using RepeatModeler2 (Flynn et al. 2020) to generate an initial comprehensive set of candidate TE families in the male reference genome assembly (Fraser et al. 2020). RepeatMasker (Smit et al. http:// repeatmasker.org) was used to make a library of consensus sequences from the RepeatModeler2 analysis plus Teleostei repeats from Repbase (https://www.girinst.org/repbase/). A filtered list of candidates was created and manually annotated following the procedures and criteria described by Goubert et al. (2022). RepeatMasker was then run again to find and annotate repeat copies throughout the male reference genome. 2. There are two files with results from the guppy, , as follows. GUPPY_consensus_library.fa (consensus TE library from RepeatModeler) guppy_ref.align_with_div.noCpG.size.out (RepeatMasker result) 3. Micropoecilia picta: 6 files from the RepeatModeler and RepeatMasker analyses of the M. picta assembly. Files from the RepeatModeler and RepeatMasker analyses of the M. picta assembly For the whole genome picta_assembly.unmasked.out picta_assembly.unmasked.out.gff For just chromosome 12, the sex chromosome LG12_picta.fa.out LG12_picta.fa.out.gff The consensus sequences produced by RepeatModeler consensi_picta.fa.classified consensi.fa References Flynn, J. M., R. Hubley, C. Goubert, J. Rosen, A. G. Clark et al., 2020 RepeatModeler2: automated genomic discovery of transposable element families. Proceedings of the National Academy of Sciences of the United States of America 117: 9451-9457. doi: 10.1073/pnas.1921046117 Fraser, B. A., J. R. Whiting, J. R. Paris, C. J. Weadick, P. J. Parsons et al., 2020 Improved reference genome uncovers novel sex-linked regions in the guppy (Poecilia reticulata). Genome Biology and Evolution 12: 1789–1805. doi: 10.1093/gbe/evaa187 Goubert, C., R. J. Craig, A. F. Bilat, V. Peona, A. A. Vogan et al., 2022 A beginner's guide to manual curation of transposable elements. Mob DNA 13: 7. doi: 10.1186/s13100-021-00259-7 Smit, A., R. Hubley and P. Green, 2013-2015 RepeatMasker Open-4.0<br>1. There are two files with results from the guppy, as follows.GUPPY_consensus_library.fa (consensus TE library from RepeatModeler)guppy_ref.align_with_div.noCpG.size.out (RepeatMasker result)<br>2. <i>Micropoecilia picta</i>: 6 files from the RepeatModeler and RepeatMasker analyses of the M. picta assembly.<br>Files from the RepeatModeler and RepeatMasker analyses of the M. picta assemblyFor the whole genomepicta_assembly.unmasked.outpicta_assembly.unmasked.out.gff<br>For just chromosome 12, the sex chromosomeLG12_picta.fa.outLG12_picta.fa.out.gff<br>The consensus sequences produced by RepeatModelerconsensi_picta.fa.classifiedconsensi.fa<br>
DOI: 10.6084/m9.figshare.26037637.v1
title: Available data

description: Available data about MESS paper.
DOI: 10.6084/m9.figshare.3553173.v1
title: Appendix A. Landcover types with floral densities averaged over the entire study season.

description: Landcover types with floral densities averaged over the entire study season.
DOI: 10.60893/figshare.jvb.28196186.v1
title: Supplemental Material

description: Supplemental material includes the following: SEM-EDS analysis of perovskite materials, XRD analysis of perovskite materials, VASE analysis of TiO2 substrate.
DOI: 10.17632/364p44vtj2
title: Data:Short Circuit 72Ah Li-Ion Battery & Battery Management Controller

description: This dataset is in support of my research.

I had earlier got remark by someone- If this is my work or stolen or copied paste or other ... remark, from some graduate/pg/plagiarised phd degree holder.

As I wont later entertain any question/remark and I will stop replying lateron (which may start to happen next week or next year). I have uploaded this for free download on this open-access myself.
DOI: 10.17632/gsm53nrgvb
title: (Dataset) Innovative Technologies for Safety and Health Occupational 

description: Scoping Review Dataset on Innovative Technologies for Occupational Safety and Health
DOI: 10.6084/m9.figshare.20137955.v2
title: Montreal_garment industry_supply chain.xlsx

description: This dataset is developed to model and optimize the closed-loop supply chain network for the garment industry in Montreal, Canada. Information for each sheet is described as following: 1. First sheet "Indices": assigns indicators to entities 2. Second sheet "Parameters": shows the quantity of each parameter 3. Third sheet "Identifier": helps to identify the quantity of each parameter while showing the index indicator 4. Fourth sheet "ID example": brings an example to utilize the third sheet <br> A short instruction to use the third sheet: 1. Copy a column you wish to analyze and paste it on yellow cells (Column G) 2. Change indices (green cells) according to the copied column 3. Browse the table to find the quantity of the expected parameter
DOI: 10.6084/m9.figshare.23617152.v1
title: Raw data: Lateral and vertical patterns of the function and structure of nitrifying and denitrifying microbial communities in rivers across China

description: Raw data for “Lateral and vertical patterns of the function and structure of nitrifying and denitrifying microbial communities in rivers across China”.
DOI: 10.6084/m9.figshare.5226166.v1
title: PLOS ONE - Gupta 2017 - data_pub.csv

description: Background: HIV-infected patients have an increased risk of cardiovascular disease (CVD). Impaired endothelial function is an early risk factor for CVD in the general population. It is presumed that HIV infection is associated with impaired endothelial function, but results have been inconsistent. Objectives: Our objectives were to determine the relationships between HIV infection, virologic suppression with antiretroviral therapy (ART), in vivo measures of conduit artery and microvascular endothelial function, and circulating biomarkers of pathways associated with CVD. Methods: We performed a cross-sectional analysis of three prospectively enrolled groups from a single center: 28 were HIV-infected and virologically-suppressed on a regimen of FTC/TDF/EFV (HIV+ART+), 44 were HIV-infected but not on ART (HIV+ART-), and 39 were HIV-uninfected healthy volunteers (HIV-) matched to the HIV+ART- group for age, sex, smoking status, and height. None had diabetes, uncontrolled hypertension, known CVD, or other pro-inflammatory condition. Flow mediated dilation (FMD), nitroglycerin-mediated dilation (NTGMD), reactive hyperemia velocity time integral (RHVTI), and FMD/RHVTI of the brachial artery were measured, as well as circulating biomarkers of systemic inflammation, metabolism, oxidative stress, and endothelial activation. This study was approved by the Indiana University Institutional Review Board. All participants provided written, informed consent. Results: No significant differences were found amongst the three groups in FMD (P=0.46), NTGMD (P=0.42), RHVTI (P=0.17), and FMD/RHVTI (P=0.22) in unadjusted comparisons. Adjusted ANOVA models which included brachial artery diameter, demographics, and conventional CVD risk factors did not appreciably change these findings. In pairwise comparisons, the HIV+ART- group had significantly higher soluble tumor necrosis factor receptor II, soluble CD163, β-2 microglobulin, interferon-γ- induced protein-10, tissue inhibitor of metalloproteinase-1, and vascular cell adhesion molecule-1 compared to the other two groups (all p&lt;0.05). Correlates of endothelial function differed between study groups. Conclusion: Although untreated HIV infection was associated with elevated levels of several biomarkers of inflammation and endothelial activation, we were unable to demonstrate differences in measures of conduit artery and microvascular endothelial function in this study population.
DOI: 10.6084/m9.figshare.7359527.v1
title: Defining Representativeness Heuristic in Trauma Triage Data File

description: This is the data set used to define the representativeness heuristic in trauma triage. We performed a retrospective observational cohort study of moderate-to-severely injured patients who presented to non-trauma centers at UPMC from 2010-2014. We identified these patients using a validated algorithm to converted ICD-9 discharge codes into Abbreviated Injury Scale scores and Injury Severity Scores. We then abstracted initial encounter notes from the UPMC medical record for these patients and coded them for evidence of "representative" characteristics. We looked for differences in the presence of these characteristics by injury subgroups in between patients who were appropriately transferred to a trauma center and those who were not. We then performed a multi-variate logistic regression with random effects for hospital to identify the effect of having any representative characteristics at all on odds of transfer while adjusting for other covariates.
DOI: 10.17632/4c2b5ps45d
title: CONTRAST MEDIA IMAGE IN ULTRASOUND EXAM

description: different ultrasound images with and without new type of oral contrast media witch can applied to skin as a gel. FOR: support cooperation and sponsorship aljware83@gmail .com
DOI: 10.17632/cb4f5xw3nf
title: OCD-TMS Dataset

description: We demonstrated the mean, standard deviation (SD) and samplesize values of pre-post rTMS scores changes on the Y-BOCS and the number of patients who dropped out due to any adverse events in active rTMS and sham rTMS groups.
DOI: 10.17632/gb5bd386g4
title: Data, Models, and Scripts of Integrated Physiological Model of Virtual Diabetic Patient for Machine Learning Research

description: Machine Learning (ML) based predictive models of blood glucose forecasting for diabetic patient produce future glucose trend without any physiological explanation. In this research effort, operation research (OR) is adopted by building a constraint-based physiological model of a diabetic patient with exercise dynamics for producing explanation from ML-based forecasting. The proposed constraint-based diabetic model is implemented in MATLAB/Simulink environment and validated with clinical and free-living datasets. Then the model is applied for OR on forecasting of a Feed-Forward Neural Network (FFNN) which is built on continuous glucose monitoring (CGM) profile along with carbohydrate and physical activity data of a type-2 diabetic patient. 

This material set contains all Simulink model files, MATLAB scripts, the experimental datasets used for building and validating physiological and ML models, and result files.
DOI: 10.6084/m9.figshare.13465742.v1
title: Data and codes for building-level population estimation

description: The data and codes that support the findings of the study of "A new method for building-level population estimation by integrating LiDAR, nighttime light, and POI data".<br>
DOI: 10.6084/m9.figshare.14575647.v1
title: Supplemental_Data_3_GSEA_Outputs.xlsx

description: Gene Set Enrichment Analysis Output Result Tables
DOI: 10.6084/m9.figshare.19248108.v2
title: Two-directional-field-measurements

description: This zip package contains all the datasets in the project of two-directional field measurements.
DOI: 10.6084/m9.figshare.5125516.v1
title: Supplementary Material for: Population-Based Validation of the iScore for Predicting Mortality and Early Functional Outcome in Ischemic Stroke Patients

description: <b><i>Background:</i></b> We aimed to determine the accuracy of the iScore for predicting mortality and early disability following ischemic stroke in a French population-based study. <b><i>Methods:</i></b> All patients with acute ischemic stroke were identified among residents of the city of Dijon, France, between 2006 and 2011, using a population-based stroke registry. The 30-day iScore and 1-year iScore were calculated. A logistic regression model was used to assess the performance of the iScore for predicting both 30-day and 1-year mortality, and poor functional outcome at discharge (modified Rankin Scale score of 3-6). The discrimination and calibration of the model were assessed using the c-statistic and the Hosmer-Lemeshow goodness-of-fit test, respectively. <b><i>Results:</i></b> Among the 1,199 ischemic stroke patients recorded, 107 (8.9%) were excluded because at least one item of data was missing. For the remaining 1,092 patients, the c-statistic was 0.85 (95% CI: 0.82-0.89) for 30-day and 0.84 (0.81-0.87) for 1-year mortality, and calibration was good (p = 0.82 and p = 0.96, respectively, for the Hosmer-Lemeshow test). Similar results were found for disability (c-statistic 0.81, 95% CI: 0.79-0.84, and p = 0.45 for the Hosmer-Lemeshow test). <b><i>Conclusion:</i></b> This is the first population-based study to demonstrate the accuracy of the iScore for predicting mortality and early disability in ischemic stroke patients.
DOI: 10.6084/m9.figshare.5350321.v5
title: An extracellular matrix-related prognostic and predictive indicator for early-stage non-small cell lung cancer

description: These meta-data and codes have been developed and used in our recent publication. <br><b>How to Cite Our Codes/Meta-dataset:<br></b>Lim, S B <i>et al.</i> An extracellular matrix-related prognostic and predictive indicator for early-stage non-small cell lung cancer. <i>Nature Communications</i> 8, 1734, 2017.<br><br><br>
DOI: 10.6084/m9.figshare.7897973.v1
title: gVCF_HG03291

description: 1000 Genomes gVCF mapped to hs37d5 for HG03291. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.8323142.v1
title: pacbio_dastool_analysis_binset_lt10redund.bins

description: PacBio dastool AN bins
DOI: 10.6084/m9.figshare.12923591.v1
title: A regionalized dataset of first records of non-indigenous macrophytes and crustaceans in the Mediterranean Sea

description: The dataset contains information on first records of 125 species of macrophytes and 166 species of crustaceans introduced in the Mediterranean Sea from 1813 to 2019. The Mediterranean Sea was regionalized using the Exclusive Economic Zones (UNCLOS III - Third United Nations Conference on the Law of the Sea) of the countries bordering the basin as a general reference. The original 20 EEZs were reduced to 11 operational geographical units (OGU hereafter; Figure 1) considering current proposals of eco-regionalization of the Mediterranean Sea in relation with trophic regimes, biogeochemistry, and water masses circulation. A list of non-indigenous marine and oligohaline macrophytes (Kingdom Plantae, Phylum Charophyta, Chlorophyta, Rhodophyta, and Tracheophyta; Kingdom Chromista, Phylum Ochrophyta) recorded in the Mediterranean Sea was collated using the catalogue provided by the European Alien Species Information Network (EASIN; http://easin.jrc.ec.europa.eu; database version 8.5 - 14/08/2020 accessed 04/09/2020). The World Register of Marine Species (WoRMS; http://www.marinespecies.org) was used to resolve taxonomic uncertainties and synonymies, and for the taxonomic classification of each species. Additionally, a list of non-indigenous crustacean species (Kingdom Animalia, Phylum Arthropoda) was completed adopting identical sources and selection criteria. Both lists were complemented with taxonomic information and additional data regarding the year of first record in each OGU, the primary pathway of introduction identified by the lowest uncertainty (coded according with the Convention on Biological Diversity guidelines or, if not available, a modified Hulme classification criterion), and the native range collated from EASIN, and double-checked and integrated with information from the online databases AquaNIS (www.corpi.ku.lt/aquanis) and AlgaeBase (http://www.algaebase.org/). A number of literature sources, listed in Table 1, were used to complement data on first records in each OGU.
DOI: 10.6084/m9.figshare.13633937.v1
title: Afinn

description: Contiene el Lexicon afinn con ajustes ortograficos. La fuente de la información es la siguiente: Mendoza Vega, Juan Bosco (2018). <b>Análisis de sentimientos con R - Léxico Afinn</b> . R Pubs. Recuperado de: https://rpubs.com/jboscomendoza/analisis_sentimientos_lexico_afinn https://raw.githubusercontent.com/jboscomendoza/rpubs/master/sentimientos_afinn/lexico_afinn.en.es.csv<br><br>
DOI: 10.6084/m9.figshare.16559982.v1
title: Increased Temporal Variability of Gait in ASD: A Motion Capture and Machine Learning Analysis

description: This is the raw temporal gait data used in the paper entitled: "Increased Temporal Variability of Gait in ASD: A Motion Capture and Machine Learning Analysis", submitted to Journal of Autism and Developmental Disorders (JADD)<br><br>The dataset was the result of an MRes studentship funded by KESS. <br>The dataset includes the raw gait data for 16 ASD participants and 16 age matched TD participants. <br>The gait data details the timing of the participant's foot strike and toe off as captured by VICON Motion capture system. The raw values gave numerical data captured at a rate of 250 Hz (a frame captured every 4 milliseconds). This means to convert any values (i.e. time taken between 'toe off' and 'foot strike') the number needs to be multiplied by 4.
DOI: 10.6084/m9.figshare.26190473.v2
title: Datasets of wing strain and position data for path trajectory prediction

description: This is the datasets of strain sensor attached to the wing base of the flapping drone and the position data measured by Motion capture system.
DOI: 10.6084/m9.figshare.27604449.v2
title: Complete dataset

description: This file includes the raw data used for data analysis. The data was analyzed using SmartPLS.
DOI: 10.6084/m9.figshare.5241136.v1
title: Erratum: Reexamination of Caries and Fluorosis Experience of Children in an Area of Jamaica with Relatively High Fluorosis Prevalence

description: The aim of this cross-sectional study was to reexamine in 2006 caries and fluorosis experience among 5- to 6- and 11- to 12-year-olds (n = 789) in St. Elizabeth, Jamaica, an area found to have a high prevalence of dental fluorosis in 1999. Mean (± SD) dmft/DMFT scores were 2.4 ± 3.1 (n = 275) and 2.2 ± 2.3 (n = 133), fluorosis prevalence (tooth surface index of dental fluorosis &gt;0) of upper central incisors was 67% (n = 109) and 39% (n = 132) among 6- and 12-year-olds, respectively. Results indicate slightly reduced caries experience for 6-year-olds compared to 1999. Fluorosis prevalence was high particularly in 6-year-olds. Thus, risks and benefits from use of fluorides from multiple sources should be monitored carefully.
DOI: 10.17632/787g95ppwv
title: Dataset S2

description: Data for the article: Almeida, D.; Domínguez-Pérez, D.; Matos, A.; Agüero-Chapin, G.; Osório, H.; Vasconcelos, V.; Campos, A.; Antunes, A. Putative Antimicrobial Peptides of the Posterior Salivary Glands from the Cephalopod Octopus vulgaris Revealed by Exploring a Composite Protein Database. Antibiotics 2020, 9, 757. https://doi.org/10.3390/antibiotics9110757 Raw files from LC-MS/MS analyses corresponding to the biological replicate Ov2_PSG using FASP protocol. Ov2 – Octopus vulgaris biological replicate number 2. PSG – posterior salivary glands. FASP – Filter-Aided Sample Preparation.
DOI: 10.6084/m9.figshare.5666833.v1
title: FEEDING DIFFICULTIES IN PRESCHOOL CHILDREN, PREVIOUS FEEDING PRACTICES, AND NUTRITIONAL STATUS

description: ABSTRACT Objective: To identify the prevalence of feeding difficulties in preschoolers, its association with epidemiological factors and previous eating habits, and repercussion on nutritional status. Methods: Cross-sectional study with a questionnaire given to the mothers of 301 children aged 2-6 years enrolled in public and private kindergartens in Natal, Northeast Brazil, conducted in 2014-2015. Feeding difficulty was assessed according to Kerzner’s criteria, resulting in the profiles “highly selective intake”, “active child with small appetite”, “fear of feeding”, and “child with psychological disorder or neglected”. Association with the following independent variables was analyzed by logistic regression: breastfeeding time, age of cows’ milk and complementary feeding introduction, age range, family income, type of school, mothers’ profile (responsive or nonresponsive), and body mass index (BMI). Results: Feeding difficulty was found in 37.2% of cases, with predominance of “highly selective intake” (25.4%). It was not associated with infancy feeding practices, family income or type of school. There were no differences between the BMI Z score means for the groups with and without feeding difficulty (1.0±1.5 SD and 1.1±1.4 SD, respectively). The five-to-six age range had more occurrences (OR 1.8; 95%CI 1.1-2.9). Children of responsive mothers were less likely to have feeding difficulties (OR 0.4; 95%CI 0.2-0.8). Conclusions: Feeding difficulties were very frequent. Nutritional status was not impacted by it, and infancy eating habits were not associated with it. Responsive mothers’ profile is a protective factor against eating difficulties and reinforces the importance of behavioral factors and mother-child interaction.
DOI: 10.6084/m9.figshare.25254229.v3
title: speciateIT: vSpeciateDB Models

description: Compressed directories containing Markov chain models for classifying rRNA gene amplicon sequences targeting the V1V3, V3V4, or V4 regions from the human vaginal microbiota.
DOI: 10.6084/m9.figshare.27100453.v2
title: <i>Reticulitermes speratus</i> genome annotation

description: Gene prediction was conducted on the GenBank Reticulitermes speratus genome (GCA_021186555.1), resulting in the generation of the gene annotation file (Rsperatus.annotation.gff) and the protein sequence file. Additionally, a GFF3 file was compiled for genes located on the 21 longest chromosomes, with AED scores of 0.5 or lower (Rsperatus.annotation_AED05_21.gff3).
DOI: 10.6084/m9.figshare.28138415.v2
title: <b>Identifying </b><b><i>de novo</i></b><b> assembly EST-SSR in medicinal plant </b><b><i>Citrullus colocynthis</i></b><b> L.</b>

description: In this research, the data of the transcriptome sequencing study of the fruit of the <i>C. colocynthis</i> medicinal plant were used in which 83,807 <i>de novo</i> assembly sequences were prepared. The assembled transcripts of the<i> C. colocynthis</i> plant were analyzed to determine the frequency and distribution of microsatellites. From 83807 assembled transcripts using Krait software, 20221 potential microsatellites were found in 15506 transcripts and a total of 3065 primer pairs were identified.
DOI: 10.6084/m9.figshare.4868102.v3
title: Assessing the Severity of Sleep Apnea Syndrome Based on Ballistocardiogram (BCG)

description: One night's BCG data as well as the ground-truth sleep-related breathing events of 136 subjects, which can be used to study sleep-related breathing disorders (e.g., the severity of sleep apnea syndrome).