cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wskkw3
title: Occurrence Download

description: A dataset containing 461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((4.48236 52.1544,4.48562 52.1544,4.48562 52.15601,4.48236 52.15601,4.48236 52.1544))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 461 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003928-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.b8gtht7m7
title: Data from: Use of the lung flute ECO to assist in sputum collection for tuberculosis testing: a randomized crossover trial

description: The Lung Flute ECO, a self-powered, low cost, oscillatory positive
 expiratory pressure (OPEP) device, assisted people with presumptive
 tuberculosis to produce an adequate sputum volume for diagnostic testing
 and was well-tolerated.
description: # Data from: Use of the Lung Flute ECO to assist in sputum collection for
 tuberculosis testing: A randomized crossover trial
 [https://doi.org/10.5061/dryad.b8gtht7m7](https://doi.org/10.5061/dryad.b8gtht7m7) ## Description of the data and file structure Data were collected from March 8, 2022, to May 31, 2022 at eight health facilities in Cameroon. Information provided by participants was entered into the Research Electronic Data Capture (REDCap) platform. In this data set, age and BMI have been grouped to mask these indirect identifiers. The information on specific exclusion criteria have been removed; the variable screen_failure indicates which people were excluded during screening. The variables indicating whether the person has a history of TB treatment, whether they were hospitalized and how often they smoke have been removed. File 1 name: Data_Lung_Flute_ECO_Ph1b.csv File 1 description: 121 variables (columns); 1364 participants (rows); NA indicates missing data File 2: Data_Dictionary_Lung_Flute_ECO_Ph1b.csv File 2 description: Data dictionary for data set (File 1); this includes a description of each of the variables in File 1.
DOI: 10.5061/dryad.1vhhmgr26
title: Population genetic structure of Nephrops norvegicus from the Adriatic Sea inferred using microsatellite loci

description: The Nephrops norvegicus, a prized decapod crustacean species, is found at
 different depths across the East Atlantic Ocean and Mediterranean Sea.
 Despite management efforts, the stocks are globally characterized as
 overexploited. In the present study, the impact of biogeographical
 boundaries on the phylogeographical and demographic population status was
 investigated within the Adriatic Sea, addressing important genetic indices
 for decapod functional conservation management.
description: ## Population genetic structure of *Nephrops norvegicus* from the Adriatic
 Sea inferred using microsatellite loci
 [https://doi.org/10.5061/dryad.1vhhmgr26](https://doi.org/10.5061/dryad.1vhhmgr26) A total of 482 samples were successfully genotyped with 10 microsatellite markers developed for *Nephrops* and *Homarus gammarus* (André and Knutsen, 2010; Streiff et al., 2001; Skirnisdottir et al., 2010; Table S1). These were divided into three PCR multiplexes and amplified using the Qiagen multiplex kit and standard primer dyes (FAM, NED, VIC, and PET, Applied Biosystems). Fragments were separated on an ABI3130 automated sequencer with the 500 LIZ dye Size Standard (Applied Biosystems) using the services of Macrogen (Macrogen, Seoul, South Korea). Genotypes were analysed using GeneMapper software v.3.5 (Applied Biosystems). ## Description of the data and file structure This is the input file of the program STRUCTURE for 12 populations of decapod Nephrops norvegicus from the Adriatic Sea. The first row contains the marker names. Each individual is represented by two rows. -9 represents missing data.
DOI: 10.5061/dryad.fxpnvx112
title: Data from: Warm-up and metrics of song performance: a commentary on Vazquez-Cardona et al

description: Interactive plots that re-generate random data in Figure 2 of Cardoso
 (2024) "Warm-up and metrics of song performance: a commentary on
 Vazquez-Cardona et al." Behavioral Ecology.
description: # Data from: Warm-up and metrics of song performance: a commentary on
 Vazquez-Cardona et al.
 [https://doi.org/10.5061/dryad.fxpnvx112](https://doi.org/10.5061/dryad.fxpnvx112) Interactive plots that re-generate random data in Figure 2 of Cardoso (2024) "Warm-up and metrics of song performance: a commentary on Vazquez-Cardona et al." Behavioral Ecology. ## Description of the data and file structure Each figure plot is in a separate spreadsheet. Press F9 to re-generate the simulated data. In each spreadsheet: . Column A indicates the bin number for the X axis data, as per the explanations in the legend of Figure 2. . Column B contains the formula for X axis data: random numbers from a uniform distribution within each bin. . Column C contains the formula for Y axis data: absolute value of random numbers from a normal distribution with mean 0 and standard deviation 1. . In panels C and D, these random numbers for Y are divided or multiplied by 10+X, as explained in the legend of Figure 2. . Columns E to H have counts of data per bin, and the total count.
DOI: 10.5061/dryad.pzgmsbcvm
title: Cooperation in public goods game does not require assortment and depends on population density

description: The threshold public goods game is one of the best-known models of
 nonlinear public goods dilemmas. Cooperators and defectors typically
 coexist in this game when the population is assumed to follow the
 so-called structured deme model. In this paper we develop a dynamical
 model of a general N-player game in which there is no deme structure:
 individuals interact with randomly chosen neighbours and selection occurs
 between randomly chosen pairs of indi- viduals. We show that in the
 deterministic limit the dynamics in this model leads to the same
 replicator dynamics as in the structured deme model, i.e. coexistence of
 cooperators and defectors is typical in threshold public goods game even
 when the population is completely well-mixed. We extend the model to study
 the eﬀect of density dependence and density ﬂuctuation on the dynamics. We
 show analytically and numerically that decreasing population density
 increases the equilibrium frequency of cooperators till the ﬁxation of
 this strategy, but below a critical density coop- erators abruptly
 disappear from the population. Our numerical investigations show that weak
 density ﬂuctuations enhance cooperation, while strong ﬂuctuations suppress
 it.
description: # Cooperation in public goods game does not require assortment and depends
 on population density
 [https://doi.org/10.5061/dryad.pzgmsbcvm](https://doi.org/10.5061/dryad.pzgmsbcvm) The study introduces a dynamical model for the threshold public goods game without deme structure and explores the impact of density dependence and fluctuations. ## Description of the files Files: model1.py: Python script of the density independent agent based model that is described in the paper In this model, agents, either cooperators or defectors, interact in groups. Two groups are randomly formed, and individuals within them play a game, determining replacement probabilities based on their payoffs. This process repeats group_size/2 times for a single Monte Carlo cycle, equivalent to one generation update. model2.py: Python script of the density dependent agent based model that is described in the paper In this model in addition to the previous one, individuals may die with a probability of p_d, therefore there are also empty places in the population. ## Code/Software Software used to run the scripts: Python 3.9.0 No additional files are needed to run the code
DOI: 10.15468/dl.gdrnma
title: Occurrence Download

description: A dataset containing 7304 records in GBIF matching the query:
SELECT
 '485' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 46.479780028101516
 AND decimalLatitude &lt;= 51.21395264452012
 AND decimalLongitude &gt;= 81.82717519335071
 AND decimalLongitude &lt;= 93.54013222947316
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 7304 records were derived from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003910-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.kprr4xhc4
title: Gut microbiota-derived gamma-aminobutyric acid from metformin treatment reduces hepatic ischemia/reperfusion injury by inhibiting ferroptosis

description: Hepatic ischemia/reperfusion injury (HIRI) is a common and inevitable
 factor leading to poor prognosis in various liver diseases, making the
 outcomes of current treatments in the clinic unsatisfactory. Metformin has
 been demonstrated to be beneficial in alleviating HIRI in recent studies,
 however, the underpinning mechanism remains unclear. In this study, we
 found metformin mitigates HIRI-induced ferroptosis through reshaped gut
 microbiota in mice, which was confirmed by the results of fecal microbiota
 transplantation treatment but showed the elimination of the beneficial
 effects when gut bacteria were depleted using antibiotics. Detailedly,
 through 16S rRNA and metagenomic sequencing, we identified that the
 metformin-reshaped microbiota was characterized by the increase of
 gamma-aminobutyric acid (GABA) producing bacteria. This increase was
 further confirmed by the elevation of GABA synthesis key enzymes, glutamic
 acid decarboxylase, and putrescine aminotransferase, in gut microbes of
 metformin-treated mice and healthy volunteers. Furthermore, the benefit of
 GABA against HIRI-induced ferroptosis was demonstrated in GABA-treated
 mice. Collectively, our data indicate that metformin can mitigate
 HIRI-induced ferroptosis by reshaping gut microbiota, with GABA identified
 as a key metabolite.
description: # Gut microbiota-derived gamma-aminobutyric acid from metformin treatment
 reduces hepatic ischemia/reperfusion injury by inhibiting ferroptosis ##
 I. Dataset Overview This dataset contains the original data used in the
 eLife article, primarily supporting research on hepatic
 ischemia-reperfusion injury. The dataset comprises various types of data
 files, including but not limited to text files, image files, and analysis
 code. # II. File Structure and Naming Convention Data files are organized
 into separate folders based on their location in the manuscript, such as
 "figure 1 data", "figure 2 data", etc. ## III. Data
 Content Text Data: Contains experimental measurements, statistical
 results, etc. All the data are put in Excel documents named such as
 “original data (Figure 1 data)” in the “Figure 1 data” file, etc. Image
 Data: Includes experimental images, photomicrographs, etc., stored in TIFF
 or JPG format. Acronyms Meaning: ALT and AST refer to glutamic pyruvic
 transaminase and glutamic oxaloacetic transaminase, MDA represents
 Malondialdehyde, and GSH stands for Glutathione. All the information could
 be found in the published paper through the DOI supplied below. IV.
 Contact Information If you encounter any questions or require further
 information while using this dataset, please contact the corresponding
 author via the main text published in eLife (DOI:
 [https://doi.org/10.7554/eLife.89045).](https://doi.org/10.7554/eLife.89045\).)
DOI: 10.15468/tshffs
title: Molecular phylogenetic and detailed morphological analyses reveal a new species of Castrella Fuhrmann, 1900 (Platyhelminthes, Dalytyphloplanida) from Switzerland

description: This dataset contains the digitized treatments in Plazi based on the original journal article Diez, Yander L. (2026): Molecular phylogenetic and detailed morphological analyses reveal a new species of Castrella Fuhrmann, 1900 (Platyhelminthes, Dalytyphloplanida) from Switzerland. European Journal of Taxonomy 1034: 14-30, DOI: 10.5852/ejt.2026.1034.3143, URL: https://europeanjournaloftaxonomy.eu/index.php/ejt/article/download/3143/14013Abstract. Rhabdocoel microturbellarian flatworms of the family Dalyelliidae are key components of freshwater ecosystems and represent one of their most taxonomically diverse groups. Recent molecular phylogenetic studies revealed two distinct genetic lineages within Castrella truncata, a species with a wide Nearctic–Palearctic distribution. In this study, we integrated phylogenetic and morphological analyses to describe a Swiss lineage as a new species: Castrella schareri sp. nov. Phylogenetic analysis reveals that C. schareri sp. nov. is closely allied with C. alba, while C. truncata groups with C. pinguis. Morphologically, the new species is characterised by a distally unbranched stylet, featuring a shorter proximal portion and a higher number of shorter distal spines compared to C. truncata. This finding significantly enhances our knowledge of Castrella, marking the first new species described in the genus in over seventy years.
DOI: 10.5061/dryad.k3j9kd5gb
title: Vocal dimorphism in Anna’s Hummingbirds

description: Sexual dimorphism in vocal signals is found across many bird species. By
 evaluating correlations among sex, behaviors, and vocalizations, the
 meaning and utility of sound production may be inferred. Anna's
 Hummingbirds (Calypte anna) exhibit pronounced sexual dimorphism, with
 males being larger and having more vibrant coloration than females, but
 vocal dimorphism in the species is less studied. A common vocalization of
 Anna's Hummingbirds is the chip note, which is produced by both sexes
 in a wide array of contexts. Here, we correlated temporal parameters of
 recorded chip notes with individual sex and behavioral contexts gathered
 from field observations. The production rate of chip notes differed
 significantly between male and female hummingbirds but did not vary much
 with behavioral context. Although Anna’s Hummingbirds produce chips across
 a broad spectrum of behaviors, dimorphic chip production may be especially
 important in territorial behavior.
description: # Vocal dimorphism in Anna’s Hummingbirds
 [https://doi.org/10.5061/dryad.k3j9kd5gb](https://doi.org/10.5061/dryad.k3j9kd5gb) Here, we provide the spreadsheet we used in our GLMM analysis as well as the file containing all data we extracted from analyzed audio files. **Chip_Data.csv** was used in our GLMM analysis. It contains the mean interval from each file, the site the recording was collected from, and behavioral information. * File: names of recordings we extracted intervals from. * Mean Interval: mean interval from file, excluding intervals within the highest 5% of all measured interval values. * Location: initials representing the sampled site of files. BC = UC Berkeley campus, BA = UC Botanical Garden, SC = UC Santa Cruz Arboretum & Botanic Garden. * Species: species of hummingbird interacting with focal chipping birds. Anna's = Anna's Hummingbird (*Calypte anna*), Allen's = Allen's Hummingbird (*Selasphorus sasin*). * Sex: sex of recorded hummingbirds (Female, Male, or Unknown). * Eating: type of feeding behavior exhibited by recorded hummingbirds (Eating or Not Eating). * Territorial: type of territorial behavior exhibited by recorded hummingbirds (Chasing, Confronting, DAT = During or After Territorial Announcement, None, or Unknown). * Mobility: type of mobility behavior exhibited by recorded hummingbirds (Flying, Perching, or Perching & Flying) **Full_Chip_Intervals.csv** includes all intervals between chip notes from the files we analyzed * File: the name of the recording we extracted intervals from. * Interval: intervals extracted from each file using the Interactive Detector in Raven Pro 1.6 and manual selection.
DOI: 10.5061/dryad.ncjsxkt34
title: Fast-slow traits predict competition network structure and its response to resources and enemies

description: Plants interact in complex networks but how network structure depends on
 resources, natural enemies, and species resource-use strategy remains
 poorly understood. Here, we quantified competition networks among 18
 plants varying in fast-slow strategy, by testing how increased nutrient
 availability and reduced foliar pathogens affected intra- and
 inter-specific interactions. Our results show that nitrogen and pathogens
 altered several aspects of network structure, often in unexpected ways due
 to fast and slow-growing species responding differently. Nitrogen addition
 increased competition asymmetry in slow-growing networks, as expected, but
 decreased it in fast-growing networks. Pathogen reduction made networks
 more even and less skewed because pathogens targeted weaker competitors.
 Surprisingly, pathogens and nitrogen dampened each other’s effect. Our
 results show that plant growth strategy is key to understanding how
 competition responds to resources and enemies, a prediction from classic
 theories that has rarely been tested by linking functional traits to
 competition networks.
description: # Fast-slow traits predict competition network structure and its response
 to resources and enemies
 [https://doi.org/10.5061/dryad.ncjsxkt34](https://doi.org/10.5061/dryad.ncjsxkt34) This dataset is linked to the publication of "**Fast-slow traits predict competition network structure and its response to resources and enemies."** ## Description of the data and file structure See METADATA.txt file for more information about the data structure and units of measurement. ## Sharing/Access information All data and information about data collection can also be found in the GitHub repository (link in the Related Works section). ## Code/Software A webpage deployment of the code linked to this dataset can be found in the Related Works section.
DOI: 10.5061/dryad.0gb5mkm8b
title: Videos of Common Cuckoos parasitizing their Reed Warbler hosts in China

description: Dataset including eight .mp4 videos: Videos 1-3: Egg laying by female
 cuckoos in host nests. Video 4: The host collected the nest materials for
 nesting. Videos 5-7: The Common Cuckoo visits the host nest but not
 egg-laying. Video 8: The calling by a female Oriental Reed Warbler in a
 nest in the morning.
description: # Videos of Common Cuckoos parasitizing their Reed Warbler hosts in China
 ### This dataset includes eight .mp4 videos: Videos 1-3: Egg laying by
 female cuckoos in host nests. Video 4: The host collected the nest
 materials for nesting. Videos 5-7: The Common Cuckoo visits the host nest
 but not egg-laying. Video 8: The calling by a female Oriental Reed Warbler
 in a nest in the morning.
DOI: 10.5061/dryad.2bvq83bz5
title: Low-frequency hearing thresholds improve as high-frequency hearing sensitivity deteriorates between young adulthood and middle age in normally hearing people

description: Hearing sensitivity changes throughout a person’s lifetime. This work
 aimed to describe changes in pure-tone audiometric (PTA) thresholds that
 occur in the transition from young adulthood to middle age in 121 adults
 with normal or nearly normal hearing. Results showed that older people had
 worse high-frequency (4000-8000 Hz) thresholds but unexpectedly better
 low-frequency (125-500 Hz) thresholds than younger individuals, suggesting
 that hearing sensitivity in the low-frequency range may improve with age.
 The improvement of low-frequency thresholds may be part of a central
 compensation for age-related deterioration of high-frequency hearing
 sensitivity. Further studies of age-related changes in low-frequency
 hearing sensitivity are needed to confirm our findings.
description: Pure-tone audiometric (PTA) thresholds were collected from 121
 participants aged between 18 and 47 years. The thresholds were obtained at
 octave frequencies between 125 and 8000 Hz.
description: # Low-frequency hearing thresholds improve as high-frequency hearing
 sensitivity deteriorates between young adulthood and middle age in
 normally hearing people The file contains information about the pure-tone
 audiometric (PTA) thresholds of 121 adults. Thresholds were obtained using
 a calibrated clinical audiometer (Affinity 2.0, Interacoustics, Denmark)
 with a circumaural headset and measured in dB HL (hearing level). Each
 participant’s thresholds were averaged between the ears for each tested
 frequency. The file contains the following fields: * A unique participant
 ID (Participant_ID) * Participant sex (Sex) * Participant age (Age) *
 Frequencies at which thresholds were measured: F125_Hz, F250_Hz, F500_Hz,
 F1000_Hz, F2000_Hz, F2000_Hz, F4000_Hz, F8000_Hz
DOI: 10.15468/dl.qkr6vw
title: Occurrence Download

description: A dataset containing 447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leersia hexandra, Luziola peruviana, Oryza latifolia, Rhynchoryza subulata, Zizaniopsis bonariensis)",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 447 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003929-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18406044
title: SIMILARITIES AND DIFFERENCES BETWEEN THE REALISM MOVEMENT IN ENGLISH AND UZBEK LITERATURE

description: Realism as a literary movement emerged as a response to romantic idealization, emphasizing objective representation of reality, social truth, and everyday human experience. While realism in English literature developed within the context of industrialization and class stratification, Uzbek literary realism evolved under distinct socio-historical conditions, including colonial influence and cultural reform movements. This article conducts a comparative analysis of realism in English and Uzbek literature, focusing on their shared aesthetic principles and divergent ideological, thematic, and stylistic features.
DOI: 10.5281/zenodo.18406043
title: SIMILARITIES AND DIFFERENCES BETWEEN THE REALISM MOVEMENT IN ENGLISH AND UZBEK LITERATURE

description: Realism as a literary movement emerged as a response to romantic idealization, emphasizing objective representation of reality, social truth, and everyday human experience. While realism in English literature developed within the context of industrialization and class stratification, Uzbek literary realism evolved under distinct socio-historical conditions, including colonial influence and cultural reform movements. This article conducts a comparative analysis of realism in English and Uzbek literature, focusing on their shared aesthetic principles and divergent ideological, thematic, and stylistic features.