cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17882/85216
title: Thermosalinometer data from R/V JM Navaz (2007-2017)

description: In the framework of the Research Vessel JM Navaz (Spanish Institute of Oceanography, IEO) routine field and monitoring operations on the Galician coastal waters, a continuous thermosalinograph (TSG, SeaBird 21) with a fluorometer (Turner 10) was installed in 2007 as an IEO contribution to the RAIA observatory in Galicia-North Portugal (http://marnaraia.org). This research vessel has sampled the Galician Rias Baixas (Vigo, Pontevedra, Arousa and Muros) and the adjacent shelf in the framework of the IEO monitoring program RADIALES (monthly sampling, https://www.seriestemporales-ieo.net/) and also of the harmful algae Galician monitoring of INTECMAR (weekly sampling, http://www.intecmar.gal/). Data was routinely sent to the IEO datacenter and underway data are available from 12th December 2007 to 10th January 2017. During this period, the vessel performed more than 930 sampling cruises with underway TSG data, working around 6 900 hours and sailing close to 100 000 km. It has registered more than 800 000 temperature and salinity data and more than 450 000 fluorescence records. A recent revision, standardization and quality control/quality assessment of the dataset have been performed in the framework of SeaDataCloud (H2020 INFRARAIA-1-2016-2017, n730960) with additional support from MyCOAST (Interreg Atlantic Area EAPA 285/2016) and MarRISK (Interreg POCTEP Galicia-N Portugal, 0262_MARRISK_1_E) projects. This includes re-checking the clock, position, vessel speed, and recorded temperature, salinity and fluorometry values, as well as vocabularies that facilitate reuse of them. The whole dataset is provided with updated quality flags (QF) that improve their reusability. Weekly datafiles and the QF follow the seadatanet.org standards, as in formats as in vocabularies, in the pursuit of the FAIR (findable, accessible, interoperable, and reusable) data principles for sharing. At the moment, these data are freely distributed using OGC standard services (WMS, WFS, etc.) through institutional Thredds (http://centolo.co.ieo.es:8080/thredds/catalog/rv/Navaz/catalog.html) and Geoserver (http://centolo.co.ieo.es:8080/geoserver/web/) which facilitates the user's queries, automation of routines (e. g. model validation), and the development and implementation of web services and applications.
DOI: 10.17882/85142
title: Microbiological and physiological data associated to Pacific oysters exposed to seaweeds and challenged with OsHV-1 under laboratory conditions

description: Dataset associated to Dugeny, E., Lorgeril, J. d., Petton, B., Toulza, E., Gueguen, Y., and Pernet, F. in revision. Seaweeds influence oyster microbiota and disease susceptibility.
DOI: 10.17882/85088
title: Mid-Miocene to recent tectonic evolution of the Punta Stilo Swell (southern Italy): an effect of the Calabrian Arc migration

description: An integration of Low-resolution 2D multichannel seismic reflection profiles, well logs and high-resolution multibeam echosounder (HR-MBES) was used to reconstruct the Mid-Miocene to recent tectonic evolution of the Punta Stilo Swell (PSS), a submerged morphological high located on Ionian side of the Calabrian Arc (S Italy). Correlations between the structural evolution of the PSS and Mediterranean-scale geodynamic-scale were made. A possible between the present-day morphology of the PSS and the deep-buried tectonic structures was also evaluated. Low-resolution 2D seismic data were used to study the deep-buried tectonic structures and calibrated with well logs. HR-MBES data were interpreted to analyse seabed morphology. The integration of such dataset permitted to associate the origin of the PSS to the the framework of Calabrian Arc migration and Thyrrenhyan oceanization, and controlled the present-day morphology.
DOI: 10.17882/85077
title: Marinet2 - Datasets from the "Round robin" testing program on a hinged raft wave energy converter

description: These datasets contain the measurements collected on the same model of wave energy converter across four facilities during the Marinet2 Round Robin Testing Program. The involved infrastructures are University College Cork, University of Plymouth, University of Edinburgh and Centrale Nantes. The datasets consist of : - the PTO characterisation tests (only for Centrale Nantes) - the decay tests - the regular and irregular wave calibration tests without model - the model tests in regular and irregular waves The data is delivered in a compressed file which includes : - An excel file with the description of test conditions for each test, the channel lists and the list of exported variables for each test. - A pdf file describing the model, moorings and wave gauges locations in the basin. - Sensors datasheets and calibration documents - A NetCDF file for each test containing : Array variables corresponding to the measurement channels. These array variables are named with the measurement channel names and have a variable attribute corresponding to their physical unit. For wave gauges, additional variable attributes are set for X and Y location in the wave tank. Global attributes to describe the wave conditions, the infrastructure references, the basin dimensions… They are listed in the excel file.
DOI: 10.17882/84802
title: Glider MIA CTD DT spring 2018

description: The Slocum G2 Glider MIA was deployed in the Gulf of Finland, Baltic Sea, in May-June 2018. The glider sampled an 18 km long section (S–N direction). This data set is the processed delayed time CTD data from that mission. Processing included applying standard quality control and considering response times and thermal lag. The data were binned, and half YOS were arranged as profiles, meaning the variables in the data set are presented as 2D fields.
DOI: 10.17882/84636
title: ROCCH biota Mediterranean dataset : chemical contaminant in Mediterranean shellfish

description: ROCCH, French Chemical Contaminant Monitoring Network, provides each year a new official dataset to update the assessment of the chemical state of French coastal waters in the national and international context. Measurements of concentrations of trace metal elements and organic compounds in Mediterranean shellfish tissue are transmitted to the international database of ICES (for the OSPAR Convention) for quality assessment.
DOI: 10.17882/84576
title: A comprehensive compilation of the seismic stratigraphy markers along the Adriatic Sea

description: The Mediterranean Sea is a natural laboratory for addressing questions on the formation and evolution of continental margins and the relationship between surface and deep processes. The evaporites deposited during the Messinian Salinity Crisis strongly impact its sedimentary and geomorphology evolution. We present here a compilation of the main regional seismic stratigraphic markers throughout the Central and South Adriatic Sea (CAB and SAB). The following original (uninterpolated) interpretations are provided in xyz format (z in second twt): i) Top of the Mesozoic formation, ii) Base and Top of the Gessoso Solfifera along the CAB, iii) Base and Top of the MSC detrital formation along the SAB, iv) Top of the Upper Unit, v) Base and Top of the middle Pliocene unit, vi) Seafloor. The available reflection seismic dataset the data set is compiled of processed vintage seismic profiles from the Videpi database.
DOI: 10.17882/84526
title: Atmospheric fugacity of CO2 in the tropical Atlantic from 2008 to 2014

description: The atmospheric fugacity of CO2 is measured underway with an autonomous system on board a merchant ship sailing from France to Brazil.
DOI: 10.17882/84524
title: Data for CKMR abundance estimation for thornback ray (Raja clavata) in the central Bay of Biscay

description: Input data, TMB (C++) and R code for close-kin mark recapture (CKMR) abundance estimation for two subpopulations of thornback ray (Raja clavata) in the central Bay of Biscay (offshore and Gironde estuary, see figure). Samples were taken between 2015 to 2020. Parent-offspring pairs were identified using SNP genotype information. Birth years of individuals were estimated using length information and growth curves by sex.
DOI: 10.17882/84523
title: Seawater fugacity of CO2 in the tropical Atlantic from 2008 to 2014

description: The fugacity of CO2 is measured underway with an autonomous system on board a merchant ship sailing from France to Brazil.
DOI: 10.17882/84209
title: Data processing and statistical analysis of the metabolic profiles of Phaeodactylum tricornutum

description: Microalgae have evolved to face abiotic stresses by accumulating energy storage molecules such as lipids, which are also of interest for industries. A multidisciplinary approach was used to study the mechanisms involved in the transition from nitrogen-replete to nitrogen starvation conditions in the marine diatom. Metabolomic analysis resulted in the detection of 4267 compounds ranging from 0.1 and 2.8 kDa in size. In order to reduce the number of compounds to elucidate, the change in compound detected quantity was compared to the change in transcript abundance during the time course of the experiment. As a preliminary step, only compounds and transcripts which change in abundance compared to the control conditions are significant at least on a timepoint were retained. After this first screening, each compound pattern has been compared with each gene. In order to be as stringent as possible, only the combinations which display a significant direct correlation (|slope|=1, from 0.95 to 1.05; p&gt;0.05). The results shown 419 compound-gene combinations which include 115 compounds. The 115 compounds were kept for further analyses and elucidation.
DOI: 10.17882/84198
title: ESSMVP cruise data

description: This dataset contains the data collected during the ESSMVP cruise : - ocean current data measureb by hull-mounted ADCP - surface Temperature and Salinity by the onboard TSG - high-resolution vertical profiles by a MVP-Moving Vessel Profiler equipped with MSFFF - Multi Sensor Free Fall Fish (CTD, Fluorometer, LOPC-Laser Optical Particle Counter)
DOI: 10.17882/84178
title: Subsurface temperature data from 11 representative sites of the Mahoran reefs (Parc naturel marin de Mayotte) from 2015 to 2021 (CorailHF)

description: Since 2015, 12 representative sites of the Mahoran reefs have been equipped on the sub-surface with probes measuring the temperature every 10 minutes (every 1 hour since mid-2021). The data from these probes are collected every 2 months by the Operations Department of the Parc marin de Mayotte. The aim is to better understand seasonal variations and bleaching phenomena. A computer program developed by the PNMM makes it possible to analyse these data. Regularly, new probes are purchased (NKE) and calibration tests are carried out. Depth: - Baie de Boueni: 3,67 - Double barrière: 4,15 - Grand Récif Nord Est: 3,04 - Longoni: 5,02 - Passe bateaux sud: 3,25 - Passe en S - bouée 3: 4,39 - Passe en S - externe: 4,15 - Saziley: 4,43 - Surprise: 2,98 - Tanaraki: 2,92 - Hajangoua: 4,55 Cood : - Baie de Boueni: -12.9117722; 45.1349777 (-12°54.726'S; 45°08.099'E) - Double barrière: -13.00181667; 45.11048333 (-13°00.109'S; 45°06.629'E) - Grand Récif Nord Est: -12.74848333; 45.27966667 (-12°44.909'S; 45°16.780'E) - Hajangoua: -12.8383888; 45.2401333 (-12°49.033'S; 45°13.873'E) - Longoni: -12.71003; 45.16542 (-12°42.602'S; 45°09.925'E) - Passe bateaux sud: -12.9815555; 44.9880833 (-12°58.881'S; 44°59.296'E) - Passe en S - bouée 3: -12.86556667; 45.27113333 (-12°51.934'S; 45°16.268'E) - Passe en S - externe: -12.87976667; 45.27708333 (-12°52.780'S; 45°16.625'E) - Saziley: -12.98563333; 45.18245 (-12°59.138'S; 45°10.947'E) - Surprise: -12.64603333; 45.13325 (-12°38.762'S; 45°07.995'E) - Tanaraki: -12.76168333; 45.06656667 (-12°45.701'S; 45°03.994'E)
DOI: 10.17882/84102
title: OADTA-5: Oceanographic Anomaly Dataset in the Tropical Atlantic (Every 5 days)

description: This dataset is made up of the anomalies every 5 days of surface fluxes, winds, marine currents and the TS structure in the tropical Atlantic ocean. Calculated from the SODA v3.12.2 dataset (every 5 days) with 0.5° resolution, from Jan 03, 1980 to Dec 19, 2017. Geographical limits: 65°W - 25°E / 30°S - 30°N
DOI: 10.17882/84047
title: Hatchery marked otolith images and classification models

description: These data contain 250 images of hatchery marked and unmarked otolith images. The images include otoliths with one of four distinct marks. There are 50 images that contain each of the four marks, and 50 images of unmarked otoliths. The images were used to train and test neural networks for use in identifying the marks. The networks were trained on the first thirty images in each class. The remaining twenty images in each class can be used for testing. Two trained networks are included: "binarynet" distinguishes marked and unmarked images, and "classnet" classifies marked images. Two versions of "binarynet" are available: one trained on the same database as "classnet" and a second iteration stored in a "retrained" directory that was finetuned using adversarial samples selected from the training images by "classnet." Finally, a set of software utilities written in python are included that show how the networks were trained and process the images for classification by the networks.
DOI: 10.17882/83956
title: High-resolution Tropical Atlantic Surface Anomalies (HTASA): Daily surface currents

description: This dataset contains data on the daily anomalies of surface currents obtained from the HYCOM model in the period from September 2, 1992 to December 31, 2012. It is provided in a file in NetCDF format with a resolution of 1/12 degree and is located at 65°W - 20°E and 30°S - 30°N.
DOI: 10.17882/83987
title: High-resolution Tropical Atlantic Surface Anomalies (HTASA): Daily SST and SSS.

description: This dataset contains data on the daily anomalies of SST and SSS obtained from the HYCOM model in the period from October 2, 1992 to December 31, 2012. It is provided in a file in NetCDF format with a resolution of 1/12 degree and is located at 65°W - 20°E and 30°S - 30°N.
DOI: 10.17882/83699
title: FABM-NflexPD 1.0: cyclic-equilibria simulated by three model variants in an idealized high-latitude 1D water column

description: Simulations obtained at (annually repeating) cyclic equilibrium with the three phytoplankton model variants (IA, DA, FS) in an idealized water column, as presented by Kerimoglu et al. (2021). Please refer to the publication for the details. Kerimoglu, O., Anugerahanti, P., and Smith, S. L.: FABM-NflexPD 1.0: Assessing an Instantaneous Acclimation Approach for Modelling Phytoplankton Growth. Geosci. Model Dev. [preprint: https://doi.org/10.5194/gmd-2020-396], accepted for publication, 2021.
DOI: 10.17882/83698
title: Bathymetry data from the R/V Ramon Margalef echosounder (2019)

description: In the framework of the R/V R. Margalef (Spanish Institute of Oceanography, IEO) field works and alongtrack navigation, a continuous echosounder was used in order to measure the depth along its trajectory. These data were mainly held around Spanish territorial waters. During the ship trajectory, the echosounder was receiving and integrating bathymetry data and GPS position. All the data recorded were checked for quality control in a semi-automatic standard procedure and stored in MEDAR/MEDATLAS-SDN format.
DOI: 10.17882/83691
title: Bathymetry data from the R/V Ramon Margalef echosounder (2018)

description: In the framework of the R/V R. Margalef (Spanish Institute of Oceanography, IEO) field works and alongtrack navigation, a continuous echosounder was used in order to measure the depth along its trajectory. These data were mainly held around Spanish territorial waters. During the ship trajectory, the echosounder was receiving and integrating bathymetry data and GPS position. All the data recorded were checked for quality control in a semi-automatic standard procedure and stored in MEDAR/MEDATLAS-SDN format.
DOI: 10.17882/83645
title: Turbidity and chlorophyll on water column, data from the EGIM, EMSO-Canarias (ESTOC), 2020

description: This dataset contains turbidity, chlorophyll and the associated sensor raw data between the 15th of January 2020 and the 15th of June 2020 on EMSO-Canarias (a.k.a. ESTOC) observatory by the EGIM. Turbidity is one of the 7 core parameters monitored by the EGIM, EMSO Generic Instrumental Module. The EGIM prototype was deployed at the ESTOC site at 3580m depth, 100km North of Gran Canaria, to monitor local hydrodynamic variability and complement the data obtained by the ESTOC station.
DOI: 10.17882/83646
title: Conductivity, temperature and pressure data on water column, data from the EGIM, EMSO-Canarias (ESTOC), 2020

description: This dataset contains contains conductivity, temperature and pressure data between the 15th of January 2020 and the 15th of June 2020 on EMSO-Canarias (a.k.a. ESTOC) observatory by the EGIM. These are a subset of the 7 core parameters monitored by the EGIM, EMSO Generic Instrumental Module. The EGIM prototype was deployed at the ESTOC site at 3580m depth, 100km North of Gran Canaria, to monitor local hydrodynamic variability and complement the data obtained by the ESTOC station.
DOI: 10.17882/83643
title: Currents on water column, data from the EGIM, EMSO-Canarias (ESTOC), 2020

description: This dataset contains acoustic Doppler derived current values acquired between the 15th of January 2020 and the 15th of June 2020 on EMSO-Canarias (a.k.a. ESTOC) observatory by the EGIM. ADCP current is one of the 7 core parameters monitored by the EGIM, EMSO Generic Instrumental Module. The EGIM prototype was deployed at the ESTOC site at 3580m depth, 100km North of Gran Canaria, to monitor local hydrodynamic variability and complement the data obtained by the ESTOC station.
DOI: 10.17882/83642
title: High-precision pressure and temperature on water column, data from the EGIM, EMSO-Canarias (ESTOC), 2020

description: This dataset contains high-precision pressure and temperature between the 15th of January 2020 and the 15th of June 2020 on EMSO-Canarias (a.k.a. ESTOC) observatory by the EGIM. High-precision pressure is one of the 7 core parameters monitored by the EGIM, EMSO Generic Instrumental Module. The EGIM prototype was deployed at the ESTOC site at 3580m depth, 100km North of Gran Canaria, to monitor local hydrodynamic variability and complement the data obtained by the ESTOC station.
DOI: 10.17882/83639
title: Dissolved oxygen and temperature on water column, data from the EGIM, EMSO-Canarias (ESTOC), 2020

description: This dataset contains temperature and dissolved oxygen concentrations and the associated sensor raw data acquired between the 15th of January 2020 and the 15th of June 2020 on EMSO-Canarias (a.k.a. ESTOC) observatory by the EGIM. Dissolved oxygen is one of the 7 core parameters monitored by the EGIM, EMSO Generic Instrumental Module. The EGIM prototype was deployed at the ESTOC site at 3580m depth, 100km North of Gran Canaria, to monitor local hydrodynamic variability and complement the data obtained by the ESTOC station.
DOI: 10.17882/83607
title: Bathymetry data from the R/V Ramon Margalef echosounder (2017)

description: In the framework of the R/V R. Margalef (Spanish Institute of Oceanography, IEO) field works and alongtrack navigation, a continuous echosounder was used in order to measure the depth along its trajectory. These data were mainly held around Spanish territorial waters. During the ship trajectory, the echosounder was receiving and integrating bathymetry data and GPS position. All the data recorded were checked for quality control in a semi-automatic standard procedure and stored in MEDAR/MEDATLAS-SDN format.
DOI: 10.17882/83585
title: Bathymetry data from the R/V Ramon Margalef echosounder (2016)

description: In the framework of the R/V R. Margalef (Spanish Institute of Oceanography, IEO) field works and alongtrack navigation, a continuous echosounder was used in order to measure the depth along its trajectory. These data were mainly held around Spanish territorial waters. During the ship trajectory, the echosounder was receiving and integrating bathymetry data and GPS position. All the data recorded were checked for quality control in a semi-automatic standard procedure and stored in MEDAR/MEDATLAS-SDN format.
DOI: 10.17882/83385
title: Shark tracking data

description: White shark acoustic tracking data from Guadalupe island
DOI: 10.17882/83063
title: MaRINET 2 Floating offshore wind Turbine Test Data Set - UCC

description: This dataset contains the results from the tank testing in the Lir Ocean basin of a 60th scale floating semi submersible wind turbine. The results include incoming wave elevation(mooringlinestensionSemi sub motions andturbinethrust . This dataset forms part of a larger round robin campaign whereby this device was tested in 3 other facilities namely Ifremer, Ecole Central Nantes and the University of Strathclyde.
DOI: 10.17882/82967
title: Two years of High-resolution Bottom Pressure Measurements from a Tide Gauge at 30 m depth in the Northern Coast of the Mouth of San Matias Gulf, Argentine

description: Two years long time series of high-resolution bottom pressure measurements from a tide gauge configures to measure with a time span of 2 minutes. The tide gauge was deployed from April to November 2013 at 30 m depth in the northern coast of the San Matias Gulf mouth, Argentine.
DOI: 10.17882/82962
title: Tropical Atlantic Anomaly Database (TAAD)

description: This dataset is the result of the calculation of the anomalies of the oceanic surface forcings and of the physical, chemical and biological variables on the oceanic surface and subsurface, which facilitates the researchers to carry out studies related to climate change and other physical, chemical and biological processes. Several existing sources were used as model output data and data observed in situ and satellites, as well as dataset with combined data sources. Several variables are redundant, which makes it possible to do comparative studies. Among the sources used we have: ASCAT, CO2 Flux, DASK, GODAS, GPCP, MODIS-Aqua, NOAA 20th Century Reanalysis, OAFLUX, OSCAR, SeaWiFS, SMOS, SODA, TROPFLUX, WAVEWATCH3 model and the Copernicus Marine Service datasets GLOBAL_REANALYSIS_BIO-001-029, GLOBAL_REANALYSIS_BIO-001-033 and OCEANCOLOUR_GLO_OPTICS_L4_REP_OBSERVATIONS_009_081 From the OAFLUX dataset, only precipitation minus evaporation was taken, the rest of the parameters are included in TROPFLUX. The SST anomaly of this dataset, calculated from TROPFLUX, was used iin the technical report: Report on tropical marine ecosystem dynamics in the last decade. INSTITUT UNIVERSITAIRE EUROPEEN DE LA MER. https://doi.org/10.13140/rg.2.2.18939.67364