cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24260475.v1
title: Development of a CFD model indicating the quantitative relationship among reactor dimension, bed flow unevenness, and performance for VOCs biofilters

description: This study presents a Computational Fluid Dynamics (CFD) based biofiltration model to investigate the airflow distribution and the impact of bed flow unevenness (BFU) on the removal of Volatile Organic Compounds (VOCs) in biofilters. The biofiltration model consists of a gas flow sub-model and a VOCs removal sub-model, which were validated by pilot-scale experiments. The model was used to examine the quantitative relationship among reactor dimensions, including the width to height ratio of the filter bed and empty bed residence time (EBRT), BFU, and performance for VOCs biofilters. Simulation results demonstrate that the flow unevenness index (FUI) of the packing layer changes from 0.06 to 0.48 m<sup>2</sup>‧s<sup>−1</sup> with reactor dimension changes. With an increase in the width to height ratio at a constant EBRT, FUI increases, BFU changes, and flow velocity fluctuation on the cross-section becomes larger, leading to a reduction of about 10% in VOCs removal efficiency. Concentration distribution of VOCs becomes uneven in the horizontal direction. At a constant width to height ratio of the filter bed, an increase in EBRT causes an increase in FUI, leading to a decrease in VOCs removal efficiency. When the width to height ratio is 0.5, velocity fluctuation of filter bed cross-section is small, the concentration of VOCs decreases evenly across the filter bed layer, and FUI is at a low level (0.06–0.11 m<sup>2</sup>‧s<sup>−1</sup>). <i>Implication</i>: In this manuscript, a biofiltration model of VOCs biofilter based on CFD has constructed and validated. And the manuscript gave the quantitative relationship among reactor dimension, bed flow unevenness and performance for VOCs biofilters for the first time. This study can lead to enhanced VOCs removal efficiency and improved overall performance of biofilters in practical engineering applications.
DOI: 10.6084/m9.figshare.7479242
title: Additional file 8: of Comparative transcriptome analysis revealed key factors for differential cadmium transport and retention in roots of two contrasting peanut cultivars

description: Table S6. GO enrichment analysis of all DEGs. The GO terms with corrected p-value â ¤0.01 were considered significantly enriched among the DEGs. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7479209.v1
title: Additional file 13: of Comparative transcriptome analysis revealed key factors for differential cadmium transport and retention in roots of two contrasting peanut cultivars

description: Table S11. The seven expression patterns of transport-related DEGs in two peanut cultivars under Cd-free and Cd-treated. Items highlighted in red mean up-regulated, while in green mean down-regulated. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.7479230.v1
title: Additional file 4: of Comparative transcriptome analysis revealed key factors for differential cadmium transport and retention in roots of two contrasting peanut cultivars

description: Table S4. Gene expression analysis for all sample libraries. (XLSX 5503 kb)
DOI: 10.6084/m9.figshare.7479230
title: Additional file 4: of Comparative transcriptome analysis revealed key factors for differential cadmium transport and retention in roots of two contrasting peanut cultivars

description: Table S4. Gene expression analysis for all sample libraries. (XLSX 5503 kb)
DOI: 10.6084/m9.figshare.7479242.v1
title: Additional file 8: of Comparative transcriptome analysis revealed key factors for differential cadmium transport and retention in roots of two contrasting peanut cultivars

description: Table S6. GO enrichment analysis of all DEGs. The GO terms with corrected p-value â ¤0.01 were considered significantly enriched among the DEGs. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7479245
title: Additional file 9: of Comparative transcriptome analysis revealed key factors for differential cadmium transport and retention in roots of two contrasting peanut cultivars

description: Table S7. Overview of all 133 KEGG pathways for DEGs in four comparisons. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.23207829.v1
title: Additional file 4 of Identification of two novel lipid metabolism-related long non-coding RNAs (SNHG17 and LINC00837) as potential signatures for osteosarcoma prognosis and precise treatment

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.23207842
title: Additional file 2 of METTL3 and STAT3 form a positive feedback loop to promote cell metastasis in hepatocellular carcinoma

description: Additional file 2.
DOI: 10.6084/m9.figshare.23207848.v1
title: Additional file 4 of METTL3 and STAT3 form a positive feedback loop to promote cell metastasis in hepatocellular carcinoma

description: Additional file 4.
DOI: 10.6084/m9.figshare.7479245.v1
title: Additional file 9: of Comparative transcriptome analysis revealed key factors for differential cadmium transport and retention in roots of two contrasting peanut cultivars

description: Table S7. Overview of all 133 KEGG pathways for DEGs in four comparisons. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.6955049.v1
title: A mini-review on mechanochemical treatment of contaminated soil: From laboratory to large-scale

description: In recent years, the destruction of (persistent) organic pollutants and the immobilization of heavy metals and radioactive nuclides in contaminated matrices by mechanochemical treatment have been proved. Several studies demonstrate a remarkable versatility of the high energy ball milling technology in the detoxification of contaminated soil, a primary issue that demand rapid and adequate solutions. In the present mini-review, scientific and technological aspects of polluted soil mechanochemical treatment are discussed. In addition, an economic feasibility study is performed, employing technical and cost data obtained by constructors. It corroborates the competitiveness of the mechanochemical treatment as potential cleaning technology.
DOI: 10.6084/m9.figshare.8003573
title: Attachment 1.csv

description: Experimental results
DOI: 10.6084/m9.figshare.16916421
title: Additional file 4 of Development of a prognostic signature of patients with esophagus adenocarcinoma by using immune-related genes

description: Additional file 4. Supplement Table 4. The list of differences in the infiltration of 22 immune cell types in the low-and high-risk group of EAC patients.
DOI: 10.6084/m9.figshare.16916421.v1
title: Additional file 4 of Development of a prognostic signature of patients with esophagus adenocarcinoma by using immune-related genes

description: Additional file 4. Supplement Table 4. The list of differences in the infiltration of 22 immune cell types in the low-and high-risk group of EAC patients.
DOI: 10.6084/m9.figshare.7483682
title: MOESM13 of Comparative transcriptome analyses of oleaginous Botryococcus braunii race A reveal significant differences in gene expression upon cobalt enrichment

description: Additional file 13: Dataset S12. List of unigenes that differentially expressed upon high cobalt treatment (8 days).
DOI: 10.6084/m9.figshare.23207877
title: Additional file 7 of Metformin promotes female germline stem cell proliferation by upregulating Gata-binding protein 2 with histone β-hydroxybutyrylation

description: Additional file 7. Table S2. Sequence of primers used in Quantitative RT-PCR
DOI: 10.6084/m9.figshare.23207880.v1
title: Additional file 8 of Metformin promotes female germline stem cell proliferation by upregulating Gata-binding protein 2 with histone β-hydroxybutyrylation

description: Additional file 8. Table S3. Sequence of primers used in ChIP-qPCR
DOI: 10.6084/m9.figshare.23207883
title: Additional file 9 of Metformin promotes female germline stem cell proliferation by upregulating Gata-binding protein 2 with histone β-hydroxybutyrylation

description: Additional file 9. Table S4. Gata2 shRNA sequences
DOI: 10.6084/m9.figshare.23207874
title: Additional file 6 of Metformin promotes female germline stem cell proliferation by upregulating Gata-binding protein 2 with histone β-hydroxybutyrylation

description: Additional file 6. Table S1. Sequence of primers used in regular RT-PCR
DOI: 10.6084/m9.figshare.7479221
title: Additional file 1: of Comparative transcriptome analysis revealed key factors for differential cadmium transport and retention in roots of two contrasting peanut cultivars

description: Table S1. Overview of raw and clean reads in Cd-free (CK) and Cd-treated (Cd) for two peanut cultivars. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.23207883.v1
title: Additional file 9 of Metformin promotes female germline stem cell proliferation by upregulating Gata-binding protein 2 with histone β-hydroxybutyrylation

description: Additional file 9. Table S4. Gata2 shRNA sequences
DOI: 10.6084/m9.figshare.7479224
title: Additional file 2: of Comparative transcriptome analysis revealed key factors for differential cadmium transport and retention in roots of two contrasting peanut cultivars

description: Table S2. Mapping results of clean reads against the peanut reference sequence. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6955040.v1
title: Exploring the barriers and incentive architecture for modifying smoke exposures among asthmatics

description: <i>Background</i>: The socio-structural barriers for reducing secondhand smoke exposure (SHSe) among children with asthma may be insurmountable for low-income caregivers. Health promoting financial incentives (HPFIs) are increasingly being used in the adult population to motivate and sustain tobacco-reduction behaviors. We assessed barriers to SHSe reduction and means to overcome them through the design of an HPFI-based, caregiver-targeted SHSe reduction study. <i>Methods</i>: Using a mixed-methods design, we conducted semi-structured in-depth interviews among low-income primary caregivers of children with asthma residing in Baltimore City. Quantitative data using an online survey were used to augment interview findings. <i>Results</i>: Home smoking restrictions were a frequently referenced strategy for decreasing SHSe, but interviewees (<i>n</i> = 22) described the complex social pressures that undermine reduction efforts. Caregivers redirected conversations from broadly implemented smoking bans towards targeted reduction strategies among mothers and members of their social network who are active smokers. Participants converged on the notion that sustainable SHSe reduction strategies are realizable only for mothers who are active smokers, possess high self-efficacy and social structures that promote cessation. Survey data (<i>n</i> = 56) clarified the multiple contexts that underlie pediatric SHSe and preferred HPFI architecture that included fixed, recurrent payments contingent on reduced nicotine biomarkers and completion of basic asthma education classes. <i>Conclusions</i>: Based on the combined analyses, we envision testing a HPFI-based study design whose optimal target population included low-income caregivers and members of their social network where incentives are tied to pediatric biomarkers and asthma education—an integrated approach that has not yet been used in pediatric tobacco studies.
DOI: 10.5281/zenodo.10555348
title: Dataset for: Bayesian deep learning for cosmic volumes with modified gravity

description: The dataset encompasses data utilized in the scientific manuscript titled "Bayesian Deep Learning for Cosmic Volumes with Modified Gravity" available at https://arxiv.org/abs/2309.00612. It includes 3D overdensity fields and power spectra for 2500 simulations of modified gravity (MG) conducted using MG-PICOLA, encompassing 256 Mpc/h side cubical volumes with 128^3 particles. These simulations were employed to derive cosmological parameters through deep neural networks equipped with uncertainty estimations. We evaluated Bayesian neural networks (BNNs) with an enriched approximate posterior distribution, considering two cases: one with a single Bayesian last layer (BLL) and another with Bayesian layers at all levels (FullB). This research contributes to establishing a framework for extracting cosmological parameters from complete, small cosmic volumes extending into the highly nonlinear regime.
DOI: 10.5281/zenodo.10555349
title: Dataset for: Bayesian deep learning for cosmic volumes with modified gravity

description: The dataset encompasses data utilized in the scientific manuscript titled "Bayesian Deep Learning for Cosmic Volumes with Modified Gravity" available at https://arxiv.org/abs/2309.00612. It includes 3D overdensity fields and power spectra for 2500 simulations of modified gravity (MG) conducted using MG-PICOLA, encompassing 256 Mpc/h side cubical volumes with 128^3 particles. These simulations were employed to derive cosmological parameters through deep neural networks equipped with uncertainty estimations. We evaluated Bayesian neural networks (BNNs) with an enriched approximate posterior distribution, considering two cases: one with a single Bayesian last layer (BLL) and another with Bayesian layers at all levels (FullB). This research contributes to establishing a framework for extracting cosmological parameters from complete, small cosmic volumes extending into the highly nonlinear regime.
DOI: 10.6084/m9.figshare.7483724
title: MOESM5 of Comparative transcriptome analyses of oleaginous Botryococcus braunii race A reveal significant differences in gene expression upon cobalt enrichment

description: Additional file 5: Dataset S4. Unigene counts of GO enrichment upon high cobalt treatment (2 days).
DOI: 10.6084/m9.figshare.5386639
title: Genome-wide association studies for small intestine length in an F<sub>2</sub> population of chickens

description: Small intestine length is an important physiological index that is effected by nutrient intake and thus plays roles in growth and egg-laying in chickens. Although there are some studies about small intestine length, little information is available regarding the genetic architecture of small intestine. The current study was conducted to investigate the genetic architecture of small intestine length. A total of 1435 F<sub>2</sub> hens from a White Leghorn and Dongxiang reciprocal cross were phenotyped for the duodenum lengths (DL), jejunum length (JL) and ileum length (IL), and genotyped using a chicken 600 K single nucleotide polymorphism (SNP) genotyping array. SNP-based heritability estimation was performed by SAS algorithm and univariate genome-wide association studies (GWAS) were performed by GEMMA, a genome-wide efficient mixed-model association algorithm. The JL and IL exhibited high SNP-based heritability estimation (0.43 and 0.49, respectively), while the heritability estimation was moderate for the DL (0.36). Three independent univariate genome-wide screens for these small intestine lengths identified 202, 298 and 119 SNPs that were significantly associated with the DL, JL and IL, respectively. The significant genomic regions indicated that ∼170 Mb on GGA1 is an important region for these small intestine lengths. In this region, 78 SNPs were associated with them, of which 4 were involved in cell proliferation and development, corresponding to RB1 (rs313207223), CKAP2 (rs312737959) and SIAH3 (rs312771221, rs15494052) genes. Small intestine length exhibited good SNP-based heritability estimation and the GWAS results indicated that an important genomic region was located on GGA1.
DOI: 10.6084/m9.figshare.7479236
title: Additional file 6: of Comparative transcriptome analysis revealed key factors for differential cadmium transport and retention in roots of two contrasting peanut cultivars

description: Table S5. List of differentially expressed genes in four groups based on pairwise comparisons. (XLSX 27764 kb)
DOI: 10.24403/jp.1328689
title: Carl Haussknecht, ein Leben für die Botanik / Friedrich Karl Meyer
DOI: 10.6084/m9.figshare.14823890
title: Changes in phosphorylation of chicken breast muscle in response to L-histidine introduction under low-NaCl conditions

description: In an attempt to positively regulate meat quality at low NaCl concentration, the influence of L-histidine (L-his) introduction on the postmortem phosphorylation of chicken breast muscle protein that had been cured for 16 h at 1% NaCl was investigated at 90 min postmortem in the present study. The 633 different phosphoproteins (﹥1.2-fold) induced by L-his introduction during salting were identified, and a majority of these proteins were involved in glycolysis, calcium signalling pathway and muscle contraction. Myosin, actin, titin, troponin C (TnC), myosin light-chain kinase (MLCK) and γ-phosphorylase kinase (γ-PHK) were the main differentially expressed proteins (DEPs) that were associated with muscle contraction. An advantageous regulation of phosphoglucomutase-1 phosphorylation, fructose-1,6-bisphosphatase and pyruvate dehydrogenase E1 component was obtained in glycolytic metabolism after treatment with L-his.
DOI: 10.6084/m9.figshare.11678178
title: JGR

description: The Modular Electromagnetic Inversion system (ModEM; Egbert & Kelbert, 2012; Kelbert et al., 2014) was used for the 3-D inversion. The input is the full impedance tensor data, and the output is the final 3-D resistivity model.
DOI: 10.6084/m9.figshare.25204958
title: Fruit and seed set.csv

description: <b>PREMISE OF THE STUDY: </b>On islands, flowering plants tend to be more generalist in their pollination needs, as insects (the main pollinators of flowering plants) are under-represented in these ecosystems compared to the mainland. In addition, some vertebrate species that are typically insectivorous or granivorous on the mainland are forced to broaden their diet and consume other resources such as nectar or pollen on the islands. The shrub Malva arborea L., with its large and colourful flowers, attracts different groups of potential pollinators. This study aimed to compare the effectiveness of vertebrates vs insects in an insular population of M. arborea and to investigate its reproductive system.<b>METHODS:</b> For three groups of taxa (insects, birds and lizards), we assessed the two components of pollination effectiveness: (i) the quantitative component (i.e. number of visits and number of flower contacted) through direct observations of flowers; and (ii) the qualitative component (fruit and seed set, number and size of seeds, and proportion of seedling emergence) through pollinator exclusion experiments.<b>KEY RESULTS:</b> Vertebrates (birds and lizards) were quantitatively the most effective pollinators, followed by insects. However, when all three groups visited the flowers, fruit and seed set were higher than when any of them were excluded. We also found that M. arborea has hermaphrodite flowers and is able to reproduce by autogamy, although less efficiently than when pollinated by animals.<b>CONCLUSIONS:</b> Both, vertebrates and insects play an important role in the reproduction of M. arborea. Although the plant does not need pollinators to produce seeds, its reproductive success increases when all pollinators are allowed to visit the flowers. Besides providing new information on M. arborea, these findings may help to better understand the role of different pollinator groups in the reproduction of other plant species, especially on islands where the co-occurrence of vertebrate and invertebrate pollination in the same plant species is usual.
DOI: 10.6084/m9.figshare.23207874.v1
title: Additional file 6 of Metformin promotes female germline stem cell proliferation by upregulating Gata-binding protein 2 with histone β-hydroxybutyrylation

description: Additional file 6. Table S1. Sequence of primers used in regular RT-PCR
DOI: 10.6084/m9.figshare.23207830.v1
title: Additional file 5 of Sucrose metabolism analysis in a high sucrose sugarcane mutant clone at a mature stage in contrast to low sucrose parental clone through the transcriptomic approach

description: Additional file 5: Table S5. Protein kinase.
DOI: 10.6084/m9.figshare.13251116
title: Environmental drivers of plant distributions at global and regional scales

description: This study aims to disentangle how plant-environment relationships vary with latitude and among plant taxa. We collected global distribution occurrence data of plant groups (625 families, 6,221 genera, and 54,101 species). We used random forest to quantify the relative importance of 15 environmental factors (including climate, soil and topography) on plant distributions at global and regional scales (divided into different latitude zones). We also used phylogenetic generalized least square (PGLS) model to investigate the relationship between environmental variables and geographical range size, latitudinal range and limits of plants at the global scale.<br><br>Occurrence records of global plant families/genera/species were downloaded from GBIF database. Associated environmental variables were derived from multiple global databases, according to the coodinates of plants occurrences. All raw data were manipulated in R program to cope with data bias in some extents. <br>
DOI: 10.6084/m9.figshare.13251185
title: Untitled Item

description: This study aims to disentangle how plant-environment relationships vary with latitude and among plant taxa. We collected global distribution occurrence data of plant groups (625 families, 6,221 genera, and 54,101 species). We used random forest to quantify the relative importance of 15 environmental factors (including climate, soil and topography) on plant distributions at global and regional scales (divided into different latitude zones). We also used phylogenetic generalized least square (PGLS) model to investigate the relationship between environmental variables and geographical range size, latitudinal range and limits of plants at the global scale.<br>The occurrence records of global plant families/genera/species were downloaded from GBIF database. Associated environmental variables were derived from multiple global databases, according to the coodinates of plants occurrences. All raw data were manipulated in R program to cope with data bias in some extents.
DOI: 10.6084/m9.figshare.23207922
title: Additional file 3 of A T-cell-related signature for prognostic stratification and immunotherapy response in hepatocellular carcinoma based on transcriptomics and single-cell sequencing

description: Additional file 3: Table S3. Cell markers identified by single-cell sequencing analysis.
DOI: 10.6084/m9.figshare.6955049
title: A mini-review on mechanochemical treatment of contaminated soil: From laboratory to large-scale

description: In recent years, the destruction of (persistent) organic pollutants and the immobilization of heavy metals and radioactive nuclides in contaminated matrices by mechanochemical treatment have been proved. Several studies demonstrate a remarkable versatility of the high energy ball milling technology in the detoxification of contaminated soil, a primary issue that demand rapid and adequate solutions. In the present mini-review, scientific and technological aspects of polluted soil mechanochemical treatment are discussed. In addition, an economic feasibility study is performed, employing technical and cost data obtained by constructors. It corroborates the competitiveness of the mechanochemical treatment as potential cleaning technology.
DOI: 10.6084/m9.figshare.23207877.v1
title: Additional file 7 of Metformin promotes female germline stem cell proliferation by upregulating Gata-binding protein 2 with histone β-hydroxybutyrylation

description: Additional file 7. Table S2. Sequence of primers used in Quantitative RT-PCR