cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0113408.10fu
title: SH0113408.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive121683.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive121683.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0113409.10fu
title: SH0113409.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive121684.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive121684.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0113410.10fu
title: SH0113410.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive121685.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive121685.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0113411.10fu
title: SH0113411.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.c.3937714_d14
title: Additional file 22: of Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

description: Primers sequences for qRT-PCR. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.c.3937780_d1
title: Additional file 10: of The male sexual apparatus in the order Scorpiones (Arachnida): a comparative study of functional morphology as a tool to define hypotheses of homology

description: Appendix 9: Spermatophores of extant scorpion families: Material examined. (XLSX 13ย�kb)
DOI: 10.6084/m9.figshare.c.3937714_d15.v1
title: Additional file 2: Table S2. of Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

description: Putative transposable elements in the Sclerospora graminicola genome sequence. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3937714_d15
title: Additional file 2: Table S2. of Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

description: Putative transposable elements in the Sclerospora graminicola genome sequence. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3937780_d2.v1
title: Additional file 1: of The male sexual apparatus in the order Scorpiones (Arachnida): a comparative study of functional morphology as a tool to define hypotheses of homology

description: Appendix 1: Hemispermatophores of extant scorpion families: Matrix of characters pertaining to the structural pattern of the hemispermatophore capsule (Nexus format) used for ancestral state reconstruction on the phylogeny by Stockwell [4]. (TXT 1ย�kb)
DOI: 10.6084/m9.figshare.c.3937714_d16.v1
title: Additional file 3: Table S3. of Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

description: Number of ortholog groups within the oomycete genomes. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3937780_d2
title: Additional file 1: of The male sexual apparatus in the order Scorpiones (Arachnida): a comparative study of functional morphology as a tool to define hypotheses of homology

description: Appendix 1: Hemispermatophores of extant scorpion families: Matrix of characters pertaining to the structural pattern of the hemispermatophore capsule (Nexus format) used for ancestral state reconstruction on the phylogeny by Stockwell [4]. (TXT 1ย�kb)
DOI: 10.6084/m9.figshare.c.3937714_d16
title: Additional file 3: Table S3. of Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

description: Number of ortholog groups within the oomycete genomes. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3937780_d3.v1
title: Additional file 2: of The male sexual apparatus in the order Scorpiones (Arachnida): a comparative study of functional morphology as a tool to define hypotheses of homology

description: Appendix 2: Hemispermatophores of extant scorpion families: Matrix of characters pertaining to the structural pattern of the hemispermatophore capsule (Nexus format) used for ancestral state reconstruction on the phylogeny by Coddington et al. [102]. (TXT 1ย�kb)
DOI: 10.15468/dl.yb6x3j
title: Occurrence Download

description: A dataset containing 124752 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Desmognathus Baird, 1850)"
 ]
}

 The dataset includes 124752 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040493-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3937780_d3
title: Additional file 2: of The male sexual apparatus in the order Scorpiones (Arachnida): a comparative study of functional morphology as a tool to define hypotheses of homology

description: Appendix 2: Hemispermatophores of extant scorpion families: Matrix of characters pertaining to the structural pattern of the hemispermatophore capsule (Nexus format) used for ancestral state reconstruction on the phylogeny by Coddington et al. [102]. (TXT 1ย�kb)
DOI: 10.6084/m9.figshare.c.3937714_d17.v1
title: Additional file 4: Table S4. of Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews

description: Gene IDs for nitrogen and sulfur assimilation enzymes in Sclerospora graminicola and related oomycetes. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3937780_d4.v1
title: Additional file 3: of The male sexual apparatus in the order Scorpiones (Arachnida): a comparative study of functional morphology as a tool to define hypotheses of homology

description: Appendix 3: Hemispermatophores of extant scorpion families: Matrix of characters pertaining to the structural pattern of the hemispermatophore capsule (Nexus format) used for ancestral state reconstruction on the phylogeny by Soleglad & Fet [44] and Solegald et al. [103]. (TXT 1ย�kb)
DOI: 10.6084/m9.figshare.c.3937837_d3.v1
title: Additional file 3: Data S2. of Polymorphisms in ADH1B and ALDH2 genes associated with the increased risk of gastric cancer in West Bengal, India

description: Description of data- raw data of all the participants in the study. (CSV 11Â kb)
DOI: 10.6084/m9.figshare.c.3938473_d2.v1
title: MOESM2 of A multiscale modeling study of particle size effects on the tissue penetration efficacy of drug-delivery nanoparticles

description: Additional file 2: Time Adaptive Motion of a Particle. (A) Movie file S1_Video_A.mp4 shows the time-adaptive motion of a single nanoparticle in the interstitial space and near the cell boundaries. Only the motion of the particle center is shown. (B) Movie file S1_Video_B.mp4 shows a more zoomed-in view. Both the particle and the cell are represented by circles. The circles are scaled based on their relative size in the model (particle radius 100 nm and cell radius 10 Îźm). (ZIP 821 kb)
DOI: 10.6084/m9.figshare.c.3938473_d2
title: MOESM2 of A multiscale modeling study of particle size effects on the tissue penetration efficacy of drug-delivery nanoparticles

description: Additional file 2: Time Adaptive Motion of a Particle. (A) Movie file S1_Video_A.mp4 shows the time-adaptive motion of a single nanoparticle in the interstitial space and near the cell boundaries. Only the motion of the particle center is shown. (B) Movie file S1_Video_B.mp4 shows a more zoomed-in view. Both the particle and the cell are represented by circles. The circles are scaled based on their relative size in the model (particle radius 100 nm and cell radius 10 Îźm). (ZIP 821 kb)
DOI: 10.6084/m9.figshare.c.3938491_d1.v1
title: Additional file 1: Table S1. of The influence of surface EMG-triggered multichannel electrical stimulation on sensomotoric recovery in patients with lumbar disc herniation: study protocol for a randomized controlled trial (RECO)

description: Primary and secondary outcome parameters. Detailed description of our primary and secondary outcome parameters. (XLS 21Â kb)
DOI: 10.15468/dl.sg9sxs
title: Occurrence Download

description: A dataset containing 257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Eurycea arenicola Stuart, Beamer, Farrington, Beane, Chek, Pusser, Som, Stephan, Sever & Braswell, 2020)"
 ]
}

 The dataset includes 257 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040494-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3601787_d1.v1
title: Additional file 1: of Metabolites involved in cellular communication among human cumulus-oocyte-complex and sperm during in vitro fertilization

description: Table S1. Analysis of gene expression in human oocytes related with PHS and LPC synthesis (XLS 10 kb)
DOI: 10.6084/m9.figshare.c.3602033_d2.v1
title: Additional file 2: Table S1. of Improved transcription and translation with L-leucine stimulation of mTORC1 in Roberts syndrome

description: Summary table of Babel analysis. Table S2. GO term analysis of genes that show improved translational efficiency in RBS cells with L-leucine. Table S3. List for genes with fold change in translational efficiency greater than two and a total number of reads over 20 counts at 3 h. Table S4. List for genes with fold change in translational efficiency greater than two and a total number of reads over 20 counts at 24 h. Table S5. GO term analysis for genes with the new motif. Table S6. List of genes that have the new motif. Table S7. Summary table of data in boxplot of mTORC2-regulated gene show transcription and translation in Figure S5. Table S8. Summary table of data in heatmap for 868 mitochondrial genesâ  expression (Fig. 3) and translation. Table S9. GO term analysis for mitochondrial genes that show improve transcription with L-leucine. Table S10. GO term analysis for mitochondrial genes that improve translation with L-leucine. Table S11. Summary table of data in boxplot of snoRNAs expression in Fig. 4. Table S12. GO term analysis of differentially expressed genes in RBS cells. Table S13. List of genes in NADs and their expression, from Fig. 6. (ZIP 1.78 MB)
DOI: 10.6084/m9.figshare.c.3603836_d3.v1
title: Additional file 4: Table S4. of Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum

description: Combined list of predicted sRNA using SIPHT and RITs from WebGester DB. S3A: Matches of in silico predictions with SIPHT (forward strand) S3B: Matches of in silico predictions with SIPHT (complementary strand) (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3606884_d1.v1
title: Additional file 8: of Low genetic diversity despite multiple introductions of the invasive plant species Impatiens glandulifera in Europe

description: Studies comparing genetic diversity in native and introduced ranges of invasive species.
DOI: 10.6084/m9.figshare.c.3610025_d2.v1
title: Additional file 6: Table S5. of The structure and diversity of human, animal and environmental resistomes

description: Metadata for samples collected from Human Microbiome Project (HMP) repository. (XLSX 25Â kb)
DOI: 10.15468/dl.6ghpvt
title: Occurrence Download

description: A dataset containing 257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Eurycea arenicola Stuart, Beamer, Farrington, Beane, Chek, Pusser, Som, Stephan, Sever & Braswell, 2020)"
 ]
}

 The dataset includes 257 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040495-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apyfqv
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Eurycea braggi (Smith, 1968))"
 ]
}

 The dataset includes 29 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040496-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5m344c
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Eurycea braggi (Smith, 1968))"
 ]
}

 The dataset includes 29 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040497-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zmvq9n
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Eurycea nerea (Bishop, 1944))"
 ]
}

 The dataset includes 24 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040499-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7fwf7
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Eurycea nerea (Bishop, 1944))"
 ]
}

 The dataset includes 24 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040500-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25814917
title: On the optimality of stepwise policies for managing capacity, inventory and backorders

description: We consider the problem of simultaneously managing capacity, inventory and backorders in a multi-mode production environment modelled via Brownian motion. The presence of more than two production modes adds an additional level of complexity: not just when to change modes, but also which mode to change to. We show that, under the two assumptions that demand is the overriding source of variability in the process and that the cost to change from one production mode to another is proportional to the difference in the production capacities, a policy that moves stepwise among the modes minimizes the long-run average cost. Examples demonstrate that if either assumption is violated no policy that moves stepwise among the modes may be optimal. To focus on the complexity of identifying when to change modes <i>and</i> which mode to change to, we restrict our model to simple convex holding and backorder costs and linear processing costs and costs for rejecting demand and idling capacity. We adopt the economic average cost model that allows the manager to reject demand or idle capacity at any time. We demonstrate that under our two assumptions we may impose an ordering assumption on the relative value functions that dramatically simplifies the classic Hamilton-Jacobi-Bellman equations. We show that under the economic average cost model a production mode that is initially unattractive may later become attractive as new modes are added. Our arguments are essentially constructive and lead to a practical algorithm for finding an optimal policy.
DOI: 10.6084/m9.figshare.25814917.v1
title: On the optimality of stepwise policies for managing capacity, inventory and backorders

description: We consider the problem of simultaneously managing capacity, inventory and backorders in a multi-mode production environment modelled via Brownian motion. The presence of more than two production modes adds an additional level of complexity: not just when to change modes, but also which mode to change to. We show that, under the two assumptions that demand is the overriding source of variability in the process and that the cost to change from one production mode to another is proportional to the difference in the production capacities, a policy that moves stepwise among the modes minimizes the long-run average cost. Examples demonstrate that if either assumption is violated no policy that moves stepwise among the modes may be optimal. To focus on the complexity of identifying when to change modes <i>and</i> which mode to change to, we restrict our model to simple convex holding and backorder costs and linear processing costs and costs for rejecting demand and idling capacity. We adopt the economic average cost model that allows the manager to reject demand or idle capacity at any time. We demonstrate that under our two assumptions we may impose an ordering assumption on the relative value functions that dramatically simplifies the classic Hamilton-Jacobi-Bellman equations. We show that under the economic average cost model a production mode that is initially unattractive may later become attractive as new modes are added. Our arguments are essentially constructive and lead to a practical algorithm for finding an optimal policy.
DOI: 10.15468/dl.8hgdas
title: Occurrence Download

description: A dataset containing 208802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Thailand, Viet Nam, Cambodia, Lao People’s Democratic Republic)",
 "DatasetKey is one of (KUBI Herpetology Collection, iNaturalist Research-grade Observations, Investigation and Monitoring for Ecology at the Taipei Water Special District,(2023-2024)(1/2), 臺北市政府工務局水利工程處轄管濕地及滯洪池生態監測資料, India Biodiversity Portal publication grade dataset, Observation.org, Nature data from around the World, 2021-2024_臺灣東部海岸公民科學_石梯坪_成功_富岡_南溪之生態監測, Xeno-canto - Anura sounds from around the world, Earth Guardians Weekly Feed, 2023_deoksan_amphibian_observation_information_nsmk_37)",
 "Year 2023-2024"
 ]
}

 The dataset includes 208802 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040498-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28057682
title: Raw file of a venom sample of <i>Erythrolamprus melanotus </i>from Colombia.

description: Compressed raw file of a venom sample from a Colombian population of <i>Erythrolamprus melanotus.</i>
DOI: 10.6084/m9.figshare.28057682.v1
title: Raw file of a venom sample of <i>Erythrolamprus melanotus </i>from Colombia.

description: Compressed raw file of a venom sample from a Colombian population of <i>Erythrolamprus melanotus.</i>