cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30325576
title: Dinoflagellate SPX domain-containing protein sequences

description: We used BLAST (basic local alignment search tool) analysis to identify SPXc genes within dinoflagellate genomes and transcriptomes. The analysis involved querying molecular databases such as Uniprot (https://www.uniprot.org/ (accessed on 5 May 2024) and SAGER (Symbiodiniaceae and algae genomic database) [24] with SPX gene sequences from the plant model Arabidopsis thaliana and PFAM seed sequences (PF03105) as queries. Hits with significant sequence identity (E-value &lt; 1 × 10−5) were initially identified as potential homologs of SPXc genes. The presence of putative SPX domains was further verified using CDD in the NCBI, Pfam, and SMART databases (E-value &lt; 1 × 10−5), and sequences with SPX domains identified in at least two databases were retained for subsequent analysis.
DOI: 10.6084/m9.figshare.30325576.v1
title: Dinoflagellate SPX domain-containing protein sequences

description: We used BLAST (basic local alignment search tool) analysis to identify SPXc genes within dinoflagellate genomes and transcriptomes. The analysis involved querying molecular databases such as Uniprot (https://www.uniprot.org/ (accessed on 5 May 2024) and SAGER (Symbiodiniaceae and algae genomic database) [24] with SPX gene sequences from the plant model Arabidopsis thaliana and PFAM seed sequences (PF03105) as queries. Hits with significant sequence identity (E-value &lt; 1 × 10−5) were initially identified as potential homologs of SPXc genes. The presence of putative SPX domains was further verified using CDD in the NCBI, Pfam, and SMART databases (E-value &lt; 1 × 10−5), and sequences with SPX domains identified in at least two databases were retained for subsequent analysis.
DOI: 10.6084/m9.figshare.30059041.v2
title: Understanding the Impact of User Engagement Metrics on the Dissemination of Traditional Culture: A Structural Equation Modelling Analysis of Cantonese Opera Videos on BiliBili

description: Research data
DOI: 10.6084/m9.figshare.30325638
title: Additional file 3 of Prediction models for self-harm and suicide: a systematic review and critical appraisal

description: Additional file 3. List of all reviewed models and validations, with summary information on the target population, outcome, predictive performance, risk of bias, and model presentation.
DOI: 10.6084/m9.figshare.30325638.v1
title: Additional file 3 of Prediction models for self-harm and suicide: a systematic review and critical appraisal

description: Additional file 3. List of all reviewed models and validations, with summary information on the target population, outcome, predictive performance, risk of bias, and model presentation.
DOI: 10.6084/m9.figshare.30325641
title: Additional file 4 of Prediction models for self-harm and suicide: a systematic review and critical appraisal

description: Additional file 4. Discrimination performance results and reported classification metrics for all reviewed models, presented separately by validation type (apparent performance, internal validation, external validation).
DOI: 10.6084/m9.figshare.30325641.v1
title: Additional file 4 of Prediction models for self-harm and suicide: a systematic review and critical appraisal

description: Additional file 4. Discrimination performance results and reported classification metrics for all reviewed models, presented separately by validation type (apparent performance, internal validation, external validation).
DOI: 10.6084/m9.figshare.30325644
title: Additional file 5 of Prediction models for self-harm and suicide: a systematic review and critical appraisal

description: Additional file 5. PROBAST ratings and rationale (overall and by domain) for all reviewed models and validations.
DOI: 10.6084/m9.figshare.30325644.v1
title: Additional file 5 of Prediction models for self-harm and suicide: a systematic review and critical appraisal

description: Additional file 5. PROBAST ratings and rationale (overall and by domain) for all reviewed models and validations.
DOI: 10.6084/m9.figshare.30325647
title: Additional file 6 of Prediction models for self-harm and suicide: a systematic review and critical appraisal

description: Additional file 6: R script for statistical analyses reported in the manuscript.
DOI: 10.6084/m9.figshare.30325647.v1
title: Additional file 6 of Prediction models for self-harm and suicide: a systematic review and critical appraisal

description: Additional file 6: R script for statistical analyses reported in the manuscript.
DOI: 10.6084/m9.figshare.26000123
title: Additional file 2 of Optimizing perioperative treatment for potentially resectable stage III squamous cell lung carcinoma: promising results of a condensed four-cycle regimen with tislelizumaband chemotherapy

description: Additional file 2: Supplementary Table 1. Characterization of all the Participants
DOI: 10.6084/m9.figshare.26000123.v1
title: Additional file 2 of Optimizing perioperative treatment for potentially resectable stage III squamous cell lung carcinoma: promising results of a condensed four-cycle regimen with tislelizumaband chemotherapy

description: Additional file 2: Supplementary Table 1. Characterization of all the Participants
DOI: 10.6084/m9.figshare.30254166.v1
title: Additional file 1 of Multi-omics Mendelian randomization integrating RNA-seq, eQTL and pQTL data revealed CPXM1 as a potential drug target for osteoporosis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30325666
title: Additional file 2 of PD-L1 regulates c-MET phosphorylation and contributes to MET-dependent resistance to osimertinib in EGFR-mutant NSCLC

description: Supplementary material 2. Information for cherry-pick custom library siRNAs against PTPs.
DOI: 10.6084/m9.figshare.30325666.v1
title: Additional file 2 of PD-L1 regulates c-MET phosphorylation and contributes to MET-dependent resistance to osimertinib in EGFR-mutant NSCLC

description: Supplementary material 2. Information for cherry-pick custom library siRNAs against PTPs.
DOI: 10.6084/m9.figshare.30254166
title: Additional file 1 of Multi-omics Mendelian randomization integrating RNA-seq, eQTL and pQTL data revealed CPXM1 as a potential drug target for osteoporosis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30254169
title: Additional file 2 of Multi-omics Mendelian randomization integrating RNA-seq, eQTL and pQTL data revealed CPXM1 as a potential drug target for osteoporosis

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30254169.v1
title: Additional file 2 of Multi-omics Mendelian randomization integrating RNA-seq, eQTL and pQTL data revealed CPXM1 as a potential drug target for osteoporosis

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30254172
title: Additional file 3 of Multi-omics Mendelian randomization integrating RNA-seq, eQTL and pQTL data revealed CPXM1 as a potential drug target for osteoporosis

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.30254172.v1
title: Additional file 3 of Multi-omics Mendelian randomization integrating RNA-seq, eQTL and pQTL data revealed CPXM1 as a potential drug target for osteoporosis

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.30254175
title: Additional file 4 of Multi-omics Mendelian randomization integrating RNA-seq, eQTL and pQTL data revealed CPXM1 as a potential drug target for osteoporosis

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.30254175.v1
title: Additional file 4 of Multi-omics Mendelian randomization integrating RNA-seq, eQTL and pQTL data revealed CPXM1 as a potential drug target for osteoporosis

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.30325684
title: Additional file 2 of A novel lncRNA-mediated signaling axis governs cancer stemness and splicing reprogramming in hepatocellular carcinoma with therapeutic potential

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30325684.v1
title: Additional file 2 of A novel lncRNA-mediated signaling axis governs cancer stemness and splicing reprogramming in hepatocellular carcinoma with therapeutic potential

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30325690
title: Additional file 4 of A novel lncRNA-mediated signaling axis governs cancer stemness and splicing reprogramming in hepatocellular carcinoma with therapeutic potential

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.30325690.v1
title: Additional file 4 of A novel lncRNA-mediated signaling axis governs cancer stemness and splicing reprogramming in hepatocellular carcinoma with therapeutic potential

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.30325686
title: Additional file 1 of Exploring fern pathosystems and immune receptors to bridge gaps in plant immunity

description: Additional file 1: Supplemental tables: Table S1: List of microbes, fern and control plant species genomes used in this study; Table S2: List of RLKs used in this study; Table S3: List of NLRs used in this study; Table S4: Presence/absence of known immune genes.
DOI: 10.6084/m9.figshare.30325686.v1
title: Additional file 1 of Exploring fern pathosystems and immune receptors to bridge gaps in plant immunity

description: Additional file 1: Supplemental tables: Table S1: List of microbes, fern and control plant species genomes used in this study; Table S2: List of RLKs used in this study; Table S3: List of NLRs used in this study; Table S4: Presence/absence of known immune genes.
DOI: 10.6084/m9.figshare.30325696
title: Additional file 1 of The impact factor game: an agent-based exploration of self-citation influence and interdisciplinary dynamics on impact metrics

description: Supplementary file 1.
DOI: 10.6084/m9.figshare.30325696.v1
title: Additional file 1 of The impact factor game: an agent-based exploration of self-citation influence and interdisciplinary dynamics on impact metrics

description: Supplementary file 1.
DOI: 10.6084/m9.figshare.30325504.v20
title: African Aviation and Aerospace University 2025/2026 Diploma Form/Pre Degree Form Call on 07076040542 to apply and For Admission Process on how to be admitted and mode of payment of School Fee And Acceptance Fee Contact school Admin Department +2347076040542 now to apply and for mode of making school fees, Tutions, any for more information +2347076040542. This is direct from the admin department

description: African Aviation and Aerospace University 2025/2026 Diploma Form/Pre Degree Form Call on 07076040542 to apply and For Admission Process on how to be admitted and mode of payment of School Fee And Acceptance Fee Contact school Admin Department +2347076040542 now to apply and for mode of making school fees, Tutions, any for more information +2347076040542. This is direct from the admin department
DOI: 10.6084/m9.figshare.30325698
title: Additional file 1 of In-vitro analysis of stress dynamics in polyamide and metal acrylic distal extension removable partial dentures

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.30325698.v1
title: Additional file 1 of In-vitro analysis of stress dynamics in polyamide and metal acrylic distal extension removable partial dentures

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.30325702
title: Additional file 2 of STREAM-PRS: a multi-tool pipeline for streamlining polygenic risk score computation

description: Additional file 2: Table S1. Timing of running STREAM-PRS for 404 samples in training dataset and 1,000 samples in test dataset. Table S2. Regression results of all parameters for all tools on UK Biobank data for BMI PRS. Table S3: Summary of the correlations between the different scores and the overlap of individuals in the top/bottom 5% scores for BMI PRS. Table S4. Regression results of all parameters for all tools on UK Biobank data. Table S5: Regression results of PRS with lassosum on UK Biobank data. The regression was performed for 10 different control subsets. Table S6: Regression results of PRS with PRSice-2 on UK Biobank data. The regression was performed for 10 different control subsets. Table S7: Regression results of PRS with PRS-CS on UK Biobank data. The regression was performed for 10 different control subsets. Table S8: Regression results of PRS with LDpred2 on UK Biobank data. The regression was performed for 10 different control subsets. Table S9: Regression results of PRS with lassosum2 on UK Biobank data. The regression was performed for 10 different control subsets. Table S10: Summary of amount of cases in top/bottom 5% PRS based on UK Biobank data
DOI: 10.6084/m9.figshare.30325702.v1
title: Additional file 2 of STREAM-PRS: a multi-tool pipeline for streamlining polygenic risk score computation

description: Additional file 2: Table S1. Timing of running STREAM-PRS for 404 samples in training dataset and 1,000 samples in test dataset. Table S2. Regression results of all parameters for all tools on UK Biobank data for BMI PRS. Table S3: Summary of the correlations between the different scores and the overlap of individuals in the top/bottom 5% scores for BMI PRS. Table S4. Regression results of all parameters for all tools on UK Biobank data. Table S5: Regression results of PRS with lassosum on UK Biobank data. The regression was performed for 10 different control subsets. Table S6: Regression results of PRS with PRSice-2 on UK Biobank data. The regression was performed for 10 different control subsets. Table S7: Regression results of PRS with PRS-CS on UK Biobank data. The regression was performed for 10 different control subsets. Table S8: Regression results of PRS with LDpred2 on UK Biobank data. The regression was performed for 10 different control subsets. Table S9: Regression results of PRS with lassosum2 on UK Biobank data. The regression was performed for 10 different control subsets. Table S10: Summary of amount of cases in top/bottom 5% PRS based on UK Biobank data
DOI: 10.5281/zenodo.17309462
title: Wiki Research Software Evaluation

description: The wiki evaluation was preceded by a systematic literature review and a survey of the research community. The review mapped existing tools, their functionalities, and gaps, while the survey identified the needs, challenges, and preferences of end users. These two data sources informed the wiki's structure and content.
DOI: 10.5281/zenodo.17309463
title: Wiki Research Software Evaluation

description: The wiki evaluation was preceded by a systematic literature review and a survey of the research community. The review mapped existing tools, their functionalities, and gaps, while the survey identified the needs, challenges, and preferences of end users. These two data sources informed the wiki's structure and content.
DOI: 10.6084/m9.figshare.30325738.v1
title: Additional file 2 of Temporal and age-structured analysis of Mpox spread in the 2022 Global outbreak: data-assimilation insights for epidemic control

description: Additional file 2. Comprehensive information about the results of intervention simulation.
DOI: 10.6084/m9.figshare.30325738
title: Additional file 2 of Temporal and age-structured analysis of Mpox spread in the 2022 Global outbreak: data-assimilation insights for epidemic control

description: Additional file 2. Comprehensive information about the results of intervention simulation.
DOI: 10.34740/kaggle/dsv/13317785
title: Layline Shareholder activism dataset
DOI: 10.6084/m9.figshare.30325504.v21
title: Abia State University, Uturu 2025/2026 Supplementary Form/Direct-Entry Form Call on 07076040542 to apply and For Admission Process on how to be admitted and mode of payment of School Fee And Acceptance Fee Contact school Admin Department (+2347076040542) now to apply and for mode of making school fees, Tuitions, any for more information +2347076040542. This is direct from the admin department

description: Abia State University, Uturu 2025/2026 Supplementary Form/Direct-Entry Form Call on 07076040542 to apply and For Admission Process on how to be admitted and mode of payment of School Fee And Acceptance Fee Contact school Admin Department (+2347076040542) now to apply and for mode of making school fees, Tuitions, any for more information +2347076040542. This is direct from the admin department
DOI: 10.6084/m9.figshare.30325761
title: Additional file 3 of Public attitudes towards obesity policies on the island of Ireland; exploring the relationship with biopsychosocial characteristics

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.30325761.v1
title: Additional file 3 of Public attitudes towards obesity policies on the island of Ireland; exploring the relationship with biopsychosocial characteristics

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.30325780
title: Additional file 2 of Engineered virus-like particle-assembled Vegfa-targeting Cas9 ribonucleoprotein treatment alleviates neovascularization in wet age-related macular degeneration

description: Additional file 2: Table S1. Oligomers for sgRNA cloning and primers used to amplify the on-target site for NGS. Table S2. Primers used for amplification of off-target sites: Off-targets 1–4 (CCTop-predicted) and Off-targets 5–10 (Digenome-seq-identified with NGG PAM). Table S3. All cleavage sites identified by Digenome-seq and their corresponding DNA cleavage scores.
DOI: 10.6084/m9.figshare.30325780.v1
title: Additional file 2 of Engineered virus-like particle-assembled Vegfa-targeting Cas9 ribonucleoprotein treatment alleviates neovascularization in wet age-related macular degeneration

description: Additional file 2: Table S1. Oligomers for sgRNA cloning and primers used to amplify the on-target site for NGS. Table S2. Primers used for amplification of off-target sites: Off-targets 1–4 (CCTop-predicted) and Off-targets 5–10 (Digenome-seq-identified with NGG PAM). Table S3. All cleavage sites identified by Digenome-seq and their corresponding DNA cleavage scores.
DOI: 10.6084/m9.figshare.30325792
title: Additional file 2 of The integration of single-cell and metabolomics reveals the increase of oxidative phosphorylation during the liver metastasis of colorectal cancer

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.30325792.v1
title: Additional file 2 of The integration of single-cell and metabolomics reveals the increase of oxidative phosphorylation during the liver metastasis of colorectal cancer

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.30325795
title: Additional file 3 of The integration of single-cell and metabolomics reveals the increase of oxidative phosphorylation during the liver metastasis of colorectal cancer

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.30325795.v1
title: Additional file 3 of The integration of single-cell and metabolomics reveals the increase of oxidative phosphorylation during the liver metastasis of colorectal cancer

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.30325773
title: Additional file 2 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 2. Unique peptides used for myosin isoform analysis.
DOI: 10.6084/m9.figshare.30325773.v1
title: Additional file 2 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 2. Unique peptides used for myosin isoform analysis.
DOI: 10.6084/m9.figshare.30325776
title: Additional file 3 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 3. Myosin isoform analysis results.
DOI: 10.6084/m9.figshare.30325776.v1
title: Additional file 3 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 3. Myosin isoform analysis results.
DOI: 10.6084/m9.figshare.30325779
title: Additional file 4 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 4. Proteome differential analysis results.
DOI: 10.6084/m9.figshare.30325779.v1
title: Additional file 4 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 4. Proteome differential analysis results.
DOI: 10.6084/m9.figshare.30325782
title: Additional file 5 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 5. Combined Ion file.
DOI: 10.6084/m9.figshare.30325782.v1
title: Additional file 5 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 5. Combined Ion file.
DOI: 10.6084/m9.figshare.30325798
title: Additional file 4 of The integration of single-cell and metabolomics reveals the increase of oxidative phosphorylation during the liver metastasis of colorectal cancer

description: Supplementary Material 4.
DOI: 10.6084/m9.figshare.30325798.v1
title: Additional file 4 of The integration of single-cell and metabolomics reveals the increase of oxidative phosphorylation during the liver metastasis of colorectal cancer

description: Supplementary Material 4.
DOI: 10.6084/m9.figshare.30325785
title: Additional file 6 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 6. Modified peptides file.
DOI: 10.6084/m9.figshare.30325785.v1
title: Additional file 6 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 6. Modified peptides file.
DOI: 10.6084/m9.figshare.30325788
title: Additional file 7 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 7. Combined peptide file.
DOI: 10.6084/m9.figshare.30325788.v1
title: Additional file 7 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 7. Combined peptide file.
DOI: 10.6084/m9.figshare.30325791
title: Additional file 8 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 8. Combined protein file.
DOI: 10.6084/m9.figshare.30325791.v1
title: Additional file 8 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 8. Combined protein file.
DOI: 10.6084/m9.figshare.30325794
title: Additional file 9 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 9. Methylome differential analysis results.
DOI: 10.6084/m9.figshare.30325794.v1
title: Additional file 9 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 9. Methylome differential analysis results.
DOI: 10.6084/m9.figshare.30325797
title: Additional file 10 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 10. Fibre-Type DNAm reference matrix.
DOI: 10.6084/m9.figshare.30325797.v1
title: Additional file 10 of Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution

description: Additional file 10. Fibre-Type DNAm reference matrix.