cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ouuo7b
title: Occurrence Download

description: A dataset containing 179538 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silene flos-cuculi (L.) Greuter & Burdet",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 179538 records from 453 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001287-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84huty
title: Occurrence Download

description: A dataset containing 10147790 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Pl@ntNet automatically identified occurrences"
 ]
}

 The dataset includes 10147790 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045809-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.se7qcf
title: Occurrence Download

description: A dataset containing 3595 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Ecuador",
 "Country is Bolivia (Plurinational State of)",
 "Country is Guyana",
 "Country is Venezuela (Bolivarian Republic of)",
 "Country is Suriname",
 "Country is Paraguay",
 "Country is Colombia",
 "Country is Peru",
 "Country is Brazil",
 "Country is Argentina"
 ]
 },
 "TaxonKey is Tapirus terrestris (Linnaeus, 1758)"
 ]
}

 The dataset includes 3595 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000277-171109162308116/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.35gzrq
title: Occurrence Download

description: A dataset containing 278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-27.09503 19.14906,26.59927 19.14906,26.59927 62.38273,-27.09503 62.38273,-27.09503 19.14906))",
 "HasCoordinate is true",
 "TaxonKey is Dryopteris villarii (Bellardi) Woyn. ex Schinz & Thell.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 278 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008223-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gpjv5r
title: Occurrence Download

description: A dataset containing 1089 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Minthostachys mollis (Benth.) Griseb."
 ]
}

 The dataset includes 1089 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0326347-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.976f8b
title: Occurrence Download

description: A dataset listing the 1596 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Japan",
 "Year 2020-2021"
 ]
}

 The dataset's 1596 records were derived from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080039-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ssapfh
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Country is Western Sahara",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 191 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000278-150221044754056/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fv5ax9
title: Occurrence Download

description: A dataset containing 31808 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Rhododendron ponticum L."
 ]
}

 The dataset includes 31808 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016419-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vy88dv
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((120.80078125 23.066406250000007,124.80078125 23.066406250000007,124.80078125 27.066406250000007,120.80078125 27.066406250000007,120.80078125 23.066406250000007))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sorghum halepense (L.) Pers."
 ]
}

 The dataset includes 38 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0330380-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7tqrj
title: Occurrence Download

description: A dataset containing 2825193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "Geometry POLYGON((-47.645 -20.932,-36.315 -20.932,-36.315 -7.272,-47.645 -7.272,-47.645 -20.932))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2825193 records from 1326 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013252-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t2d2gh
title: Occurrence Download

description: A dataset containing 342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Luzula effusa Buchenau",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 342 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0322831-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u2nh8g
title: Occurrence Download

description: A dataset containing 2617352 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Kenya"
 ]
}

 The dataset includes 2617352 records from 1056 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0312464-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.exvvx3
title: Occurrence Download

description: A dataset containing 1890 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euthynnus affinis (Cantor, 1849)"
 ]
}

 The dataset includes 1890 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050070-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.maqcdf
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Archispirostreptus gigas (Peters, 1855)"
 ]
}

 The dataset includes 87 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164410-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9bhmp
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-9959.0",
 "OccurrenceStatus is Present",
 "TaxonKey is Eupsophus migueli Formas, 1978"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0376379-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7grbdy
title: Occurrence Download

description: A dataset containing 2356 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Exocoetus volitans Linnaeus, 1758"
 ]
}

 The dataset includes 2356 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050079-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yj6xxm
title: Occurrence Download

description: A dataset containing 1965980 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Month is March",
 "Month is February",
 "Month is January"
 ]
 },
 "OccurrenceStatus is Present",
 "Year 2020-2020"
 ]
}

 The dataset includes 1965980 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037466-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s5tx7b
title: Occurrence Download

description: A dataset containing 40633 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Ireland, United Kingdom of Great Britain and Northern Ireland, Portugal, Spain, France, Germany, Belgium, Netherlands, Italy, Greece, Switzerland, Austria, Türkiye, Russian Federation, Belarus, Ukraine, Norway, Sweden, Finland, Estonia, Latvia, Lithuania, Romania, Bulgaria, North Macedonia, Albania, Slovenia, Croatia, Bosnia and Herzegovina, Hungary, Slovakia, Czechia, Poland)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arabidopsis arenosa (L.) Lawalrée"
 ]
}

 The dataset includes 40633 records from 233 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164404-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3jggm
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 {
 "or" : [
 "TaxonKey is Anthyllis lusitanica Cullen & P.Silva",
 "TaxonKey is Anthyllis vulneraria subsp. lusitanica (Cullen & P.Silva) Cullen, 1976",
 "TaxonKey is Aquilegia alpina L.",
 "TaxonKey is Aquilegia bertolonii Schott",
 "TaxonKey is Aquilegia kitaibelii Schott",
 "TaxonKey is Arabis kennedyae Meikle",
 "TaxonKey is Arabis sadina (Samp.) Cout.",
 "TaxonKey is Arabis scopoliana Boiss.",
 "TaxonKey is Arceuthobium azoricum Wiens & Hawksw.",
 "TaxonKey is Arctagrostis latifolia (R.Br.) Griseb.",
 "TaxonKey is Arctophila fulva (Trin.) Andersson",
 "TaxonKey is Arenaria ciliata subsp. pseudofrigida Ostenf. & O.C.Dahl",
 "TaxonKey is Arenaria humifusa Wahlenb.",
 "TaxonKey is Arenaria provincialis Chater & G.Halliday",
 "TaxonKey is Argyranthemum pinnatifidum subsp. succulentum (Lowe) Humphries",
 "TaxonKey is Argyranthemum thalassophilum (Svent.) Humphries",
 "TaxonKey is Armeria berlengensis Daveau",
 "TaxonKey is Armeria helodes F.Martini & Poldini",
 "TaxonKey is Armeria littoralis Boiss.",
 "TaxonKey is Armeria neglecta Girard",
 "TaxonKey is Armeria pseudarmeria (Murray) Mansf.",
 "TaxonKey is Armeria rouyana Daveau",
 "TaxonKey is Armeria sampaioi (Bernis) Nieto Fel.",
 "TaxonKey is Armeria soleirolii Duby, 1830",
 "TaxonKey is Artemisia campestris subsp. bottnica (Lundstr. ex Kindb.) Tutin, 1976"
 ]
 }
 ]
}

 The dataset includes 83 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013153-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4a5mh8
title: Occurrence Download

description: A dataset containing 1024 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "TaxonKey is Quercus suber L."
 ]
}

 The dataset includes 1024 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050092-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jgytbg
title: Occurrence Download

description: A dataset containing 11134 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onthophagus acuminatus Harold, 1880"
 ]
}

 The dataset includes 11134 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038870-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25852753
title: Coyote use of prairie dog colonies is most frequent in areas used by American Badgers: Dataset

description: <b>Abstract</b>The consequences of intraguild predation on vulnerable subordinate species are an important consideration in the recovery of endangered species. In prairie ecosystems, Coyotes (<i>Canis latrans</i>) are the primary predator of endangered Black-footed Ferrets (<i>Mustela nigripes; </i>hereafter, ferrets) and presumably compete for prairie dog (<i>Cynomys</i> spp.) prey. Coyote predation of ferrets is thought to occur at night when ferrets are active above-ground; however, the apparent source of competition, diurnal prairie dogs, are below-ground and inaccessible to Coyotes at this time, presenting a perplexing temporal mismatch between actual and expected times that Coyotes and ferrets come into conflict. Our study used remote wildlife cameras, occupancy models, and overlap of circadian activity patterns to investigate how landscape features, prairie dog colony attributes, and attraction to sympatric species, i.e., American Badgers (<i>Taxidea taxus</i>; hereafter, badgers) and lagomorphs (cottontail rabbits and jackrabbits) influence Coyote use of prairie dog colonies and potential Coyote-ferret interactions. We first evaluated Coyote use (i.e., occupancy) between prairie dog colonies and surrounding available grasslands, finding that Coyotes whose home ranges include prairie dog colonies used colonies nearly twice as much as surrounding grasslands. Next, we investigated biotic and abiotic factors that may influence Coyote use and frequency of use (i.e., detection probability) on prairie dog colonies. We found high Coyote use across all areas on prairie dog colonies; however, their frequency of use increased in areas that were also used by badgers. High overlap between Coyote and badger activity patterns (81%) further supports the spatial use patterns revealed by our occupancy analysis, and badgers and Coyotes are known to form hunting associations. Interspecific competition and overlapping patterns of resource use between badgers and ferrets have been documented in previous studies; our study supports these findings and suggests that Coyote attraction to badger activity may influence Coyote-ferret interactions.
DOI: 10.15468/dl.yvmyxt
title: Occurrence Download

description: A dataset containing 9390 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Viburnum plicatum Thunb.)"
 ]
}

 The dataset includes 9390 records from 243 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021140-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8eyevh
title: Occurrence Download

description: A dataset containing 3452 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Viburnum setigerum Hance)"
 ]
}

 The dataset includes 3452 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021141-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10460483
title: Data in support of "Metabolic loads and the costs of metazoan reproduction"

description: Reproduction includes two energy investments: the energy in offspring; and the energy expended to make them. The former is well resolved, the latter is unquantified but often assumed to be small; without both, the energy costs of reproduction are unknown. We develop a framework for estimating the total energy costs of reproduction by combining the energy content of offspring (direct costs), and the metabolic load of bearing them (indirect costs). We find that direct costs typically represent the smaller fraction of the energy expended on reproduction. Mammals pay the highest reproductive costs, ~90% of which are indirect. Ectotherms expend less on reproduction overall, and live-bearing ectotherms pay higher indirect costs than egg-layers. We show that the energy demands of reproduction exceed standard assumptions, challenging the calculus of metazoan life-histories.
DOI: 10.5281/zenodo.10460482
title: Data in support of "Metabolic loads and the costs of metazoan reproduction"

description: Reproduction includes two energy investments—the energy in the offspring and the energy expended to make them. The former is well understood, whereas the latter is unquantified but often assumed to be small. Without understanding both investments, the true energy costs of reproduction are unknown. We present a framework for estimating the total energy costs of reproduction by combining data on the energy content of offspring (direct costs) and the metabolic load of bearing them (indirect costs). We find that direct costs typically represent the smaller fraction of the energy expended on reproduction. Mammals pay the highest reproductive costs (excluding lactation), ~90% of which are indirect. Ectotherms expend less on reproduction overall, and live-bearing ectotherms pay higher indirect costs compared with egg-layers. We show that the energy demands of reproduction exceed standard assumptions.
DOI: 10.5281/zenodo.11201246
title: Data in support of "Metabolic loads and the costs of metazoan reproduction"

description: Reproduction includes two energy investments—the energy in the offspring and the energy expended to make them. The former is well understood, whereas the latter is unquantified but often assumed to be small. Without understanding both investments, the true energy costs of reproduction are unknown. We present a framework for estimating the total energy costs of reproduction by combining data on the energy content of offspring (direct costs) and the metabolic load of bearing them (indirect costs). We find that direct costs typically represent the smaller fraction of the energy expended on reproduction. Mammals pay the highest reproductive costs (excluding lactation), ~90% of which are indirect. Ectotherms expend less on reproduction overall, and live-bearing ectotherms pay higher indirect costs compared with egg-layers. We show that the energy demands of reproduction exceed standard assumptions.
DOI: 10.5281/zenodo.10667498
title: Human lung cancer harbors spatially-organized stem-immunity hubs that associate with response to immunotherapy

description: Data associated with Chen, Nieman, Spurrell et al "Human lung cancer harbors spatially-organized stem-immunity hubs that associate with response to immunotherapy" Nature Immunology, 2024. 

(1) Multiplex RNA scope. Processed cell-level data from 3 datasets, separated into manually selected "Stem Immunity" regions and "Tumor" regions, in separate files. 

(2) GeoMx. Unprocessed GeoMex data, with standard fields provided by Nanostring software. 

(3) MERFISH. Transcript-level information, including CellPose and Baysor segmentation. 

(4) Co-registered multispectral RNA and protein images. Processed cell-level data from 46 patients. Patient-level meta data information is available in supplementary table 1, tab B_Patient_Metadata. Fluorophore channel information is Figure 1a. 

Paper: https://www.nature.com/articles/s41590-024-01792-2
DOI: 10.5281/zenodo.11198494
title: Human lung cancer harbors spatially-organized stem-immunity hubs that associate with response to immunotherapy

description: Data associated with Chen, Nieman, Spurrell et al "Human lung cancer harbors spatially-organized stem-immunity hubs that associate with response to immunotherapy" Nature Immunology, 2024. 

(1) Multiplex RNA scope. Processed cell-level data from 3 datasets, separated into manually selected "Stem Immunity" regions and "Tumor" regions, in separate files. 

(2) GeoMx. Unprocessed GeoMex data, with standard fields provided by Nanostring software. 

(3) MERFISH. Transcript-level information, including CellPose and Baysor segmentation. 

(4) Co-registered multispectral RNA and protein images. Processed cell-level data from 46 patients. Patient-level meta data information is available in supplementary table 1, tab B_Patient_Metadata. Fluorophore channel information is Figure 1a. 

Paper: https://www.nature.com/articles/s41590-024-01792-2
DOI: 10.17632/2vj2tw8jkw.1
title: Lemon shark nursery habitat use

description: Data files associated with the research manuscript "A day in the life: Quantifying nursery habitat use in a coastal shark species". The study used combined accelerometer-acoustic transmitter tag packages to investigate fine-scale space use, activity and behavioural patterns of nursery-bound lemon sharks (Negaprion brevirostris) in the Bahamas. Baited remote underwater video (BRUV) surveys were then used to investigate potential overlap between shark foraging effort and prey distributions. Accelerometer and tracking data showed that the tidal phase significantly affected space use, activity and behaviour. Sharks used nearshore areas over the high tide periods where resting increased and activity levels were reduced. On falling tides sharks moved further from the shoreline and increased overall activity. Foraging effort peaked at low tide periods and foraging events overlapped with areas of disproportionately high preferred prey abundance. Ontogenetic patterns were also found in which larger sharks generally occupied larger home ranges, spent more time in areas further offshore, rested less and foraged more than smaller individuals. The data sets provided here support the findings reported in this manuscript. Data include overall dynamic body acceleration (ODBA) and behavioural data logged from animal-attached accelerometer devices, coordinate data representing shark tracking locations and BRUV data representing distribution and abundance of fish species at the study site.
DOI: 10.15468/dl.tz96yu
title: Occurrence Download

description: A dataset containing 2096 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Viburnum sieboldii Miq.)"
 ]
}

 The dataset includes 2096 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021143-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.