cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0950951.09fu
title: SH0950951.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.y4n4qr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query: { "TaxonKey" : [ "is Coelogyne floresensis Elis.George & J.-C.George" ] } The dataset includes 0 records from 0 constituent datasets:
DOI: 10.15156/bio/sh0950952.09fu
title: SH0950952.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.22548391
title: rna_anno.h5ad

description: This is the annotated scATAC-seq data which used in our research.
DOI: 10.15156/bio/sh0950953.09fu
title: SH0950953.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0950954.09fu
title: SH0950954.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.22549852
title: Motif and domain analysis for cellulose biosynthesis gene in Peb

description: Motif analysis for 39 potential cellulose biosynthesis genes in Peb and many genes identified from model plants and other crops. The txt file shows the conserved domain information for these 39 genes. The protein sequences of these genes were shown in https://doi.org/10.6084/m9.figshare.22548889.v1.
DOI: 10.34740/kaggle/dsv/5312400
title: 2021 World Population (updated daily)
DOI: 10.6084/m9.figshare.22549852.v1
title: Motif and domain analysis for cellulose biosynthesis gene in Peb

description: Motif analysis for 39 potential cellulose biosynthesis genes in Peb and many genes identified from model plants and other crops. The txt file shows the conserved domain information for these 39 genes. The protein sequences of these genes were shown in https://doi.org/10.6084/m9.figshare.22548889.v1.
DOI: 10.15156/bio/sh0950955.09fu
title: SH0950955.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5517/ccdc.csd.cc2b5k69
title: CCDC 2150290: Experimental Crystal Structure Determination

description: Related Article: Bing Liu, Wenjun Ye, Zhaopeng Zheng, Zhixu Zhou|2023|J.Mol.Struct.|1282|135214|doi:10.1016/j.molstruc.2023.135214
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15156/bio/sh0950956.09fu
title: SH0950956.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.fug94z
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query: { "TaxonKey" : [ "is Coelogyne fonstenebrarum P.O'Byrne" ] } The dataset includes 0 records from 0 constituent datasets:
DOI: 10.35078/v3ejtg
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Varginha| Município: Medeiros

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.6084/m9.figshare.22616348.v1
title: Additional file 3 of Identification of biological pathways and processes regulated by NEK5 in breast epithelial cells via an integrated proteomic approach

description: Additional file 2. Table S1. Results from Bio-ID screen. The table shows the results for proteins with log2 FC &gt; 1 and p value &lt; 0.05. Table S2. Results from MS-based proteomic analysis. Proteins with FC &gt; 1.5 in either direction and p &lt; 0.05 are highlighted by shading. Table S3. Results from MS-based phosphoproteomic analysis. Phosphosites with FC &gt; 1.5 in either direction and p &lt; 0.05 are highlighted by shading.
DOI: 10.6084/m9.figshare.22616138.v1
title: Additional file 13 of LncRNA-TBP mediates TATA-binding protein recruitment to regulate myogenesis and induce slow-twitch myofibers

description: Additional file 12: Table S3. TBP specific target genes identified by ATAC-seq analysis.
DOI: 10.6084/m9.figshare.22616348
title: Additional file 3 of Identification of biological pathways and processes regulated by NEK5 in breast epithelial cells via an integrated proteomic approach

description: Additional file 2. Table S1. Results from Bio-ID screen. The table shows the results for proteins with log2 FC &gt; 1 and p value &lt; 0.05. Table S2. Results from MS-based proteomic analysis. Proteins with FC &gt; 1.5 in either direction and p &lt; 0.05 are highlighted by shading. Table S3. Results from MS-based phosphoproteomic analysis. Phosphosites with FC &gt; 1.5 in either direction and p &lt; 0.05 are highlighted by shading.
DOI: 10.6084/m9.figshare.22616135.v1
title: Additional file 12 of LncRNA-TBP mediates TATA-binding protein recruitment to regulate myogenesis and induce slow-twitch myofibers

description: Additional file 11: Table S2. Comparative metabolome analysis of control group versus LncRNA-TBP overexpression gastrocnemius.
DOI: 10.6084/m9.figshare.22616261
title: Additional file 2 of Integrated multi-omic analysis of low-grade ovarian serous carcinoma collected from short and long-term survivors

description: Additional file 2: Table S1. Patient characteristics and total number of  LGSOC samples with each type of omics analyses performed. Table S2. List of 409 genes in the Ion AmpliSeq Comprehensive Cancer Panel assessed by targeted sequencing. Table S3. SNVs and InDels identified by targeted sequencing. Table S4. Whole-genome sequencing coverage data and variants detected. Table S5. Summary of missense and InDel somatic mutations in exon regions with variant allele frequency &gt; 15%. Table S6. All missense and InDel somatic mutations in exon regions with variant allele read count ≥ 3. Table S7. Regions with CNVs detected in each sample. Table S8. Expression values from RNAseq analysis of 12 LGSOC samples. Table S9. Global proteomic data. Table S10. Differentially expressed proteins between short-term and long-term survivors. Table S11. Proteins with higher expression in short-term survivors with targeted drugs. Table S12. Enrichment of pathways correlated with differentially expressed Protein between long-term and short-term survivors by Metascape analysis. Table S13. Characteristics of LGSOC_Inova Validation Samples. Table S14. Global phosphosites detected. Table S15. List of 42 phosphosites of specific proteins that were significantly differentially expressed between LGSOC tumors from long-term survivors and those from short-term survivors. Table S16. Enrichment of pathways correlated with differentially expressed phosphosites in Protein between long-term and short-term survivors by Metascape analysis.
DOI: 10.6084/m9.figshare.22615573
title: Additional file 11 of Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes

description: Additional file 11: Supplementary Table 2. Assigned numbers of bacterial phyla, genera and ASV under different locations, microhabitats and varieties.
DOI: 10.6084/m9.figshare.14227826
title: Additional file 5 of A broadly neutralizing monoclonal antibody induces broad protection against heterogeneous PRRSV strains in piglets

description: Additional file 5. GO enrichment of PRRSV-JXA1-upregulated-mAb-PN9cx3-reversed genes. The GO terms enriched in PRRSV-HNhx-upregulated-mAb-PN9cx3-reversed pig genes are collected in Additional file 6. Sheets 1 and 2 show the enriched biological process (BP)- and molecular function (MF)-associated GO terms, respectively.
DOI: 10.6084/m9.figshare.22615576.v1
title: Additional file 12 of Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes

description: Additional file 12: Supplementary Table 3. Alpha diversity indicated by Chao1 and Shannon under microhabitats, locations and varieties variations with related P and F values.
DOI: 10.6084/m9.figshare.14227829
title: Additional file 6 of A broadly neutralizing monoclonal antibody induces broad protection against heterogeneous PRRSV strains in piglets

description: Additional file 6. Summary of PRRSV-HNhx-upregulated mAb-PN9cx3-reversed genes. The transcript abundances were converted to transcripts per million (TPM) units, and rep1, 2 and 3 represent data from three piglets in the MOCK, HNhx and HNhx/mAb-PN9cx3 groups.
DOI: 10.6084/m9.figshare.22615582.v1
title: Additional file 14 of Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes

description: Additional file 14: Supplementary Table 5. Topological properties of networks for bacterial ASVs under different microhabitats.
DOI: 10.6084/m9.figshare.14227835
title: Additional file 8 of A broadly neutralizing monoclonal antibody induces broad protection against heterogeneous PRRSV strains in piglets

description: Additional file 8. GO enrichment of PRRSV-HNhx-upregulated-mAb-PN9cx3-reversed genes. The GO terms and KEGG pathways enriched in PRRSV-HNhx-upregulated-mAb-PN9cx3-reversed pig genes are collected in Additional file 9. Sheets 1, 2, and 3 show the enriched biological process (BP)-, cellular component (CC)-, and molecular function (MF)-associated GO terms, respectively. Sheet 4 shows the enriched KEGG pathways.
DOI: 10.6084/m9.figshare.22615588.v1
title: Additional file 16 of Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes

description: Additional file 16: Supplementary Table 7. Detailed taxonomy classification of core rice endophytic microbiota with 70% occurrence in the collected samples.
DOI: 10.6084/m9.figshare.14227832
title: Additional file 7 of A broadly neutralizing monoclonal antibody induces broad protection against heterogeneous PRRSV strains in piglets

description: Additional file 7. Summary of PRRSV-JXA1-downregulated mAb-PN9cx3-reversed genes.The transcript abundances were converted to transcripts per million (TPM) units, and rep1, 2 and 3 represent data from three piglets in the MOCK, HNhx and HNhx/mAb-PN9cx3 groups.
DOI: 10.6084/m9.figshare.14227829.v1
title: Additional file 6 of A broadly neutralizing monoclonal antibody induces broad protection against heterogeneous PRRSV strains in piglets

description: Additional file 6. Summary of PRRSV-HNhx-upregulated mAb-PN9cx3-reversed genes. The transcript abundances were converted to transcripts per million (TPM) units, and rep1, 2 and 3 represent data from three piglets in the MOCK, HNhx and HNhx/mAb-PN9cx3 groups.
DOI: 10.6084/m9.figshare.14227820.v1
title: Additional file 3 of A broadly neutralizing monoclonal antibody induces broad protection against heterogeneous PRRSV strains in piglets

description: Additional file 3. Summary of PRRSV-JXA1-upregulated-mAb-PN9cx3-reversed genes. The transcript abundances were converted to transcripts per million (TPM) units, and rep1, 2 and 3 represent data from three piglets in the MOCK, JXA1 and JXA1/mAb-PN9cx3 groups.
DOI: 10.6084/m9.figshare.14227823.v1
title: Additional file 4 of A broadly neutralizing monoclonal antibody induces broad protection against heterogeneous PRRSV strains in piglets

description: Additional file 4. Summary of PRRSV-JXA1-downregulated-mAb-PN9cx3-reversed genes. The transcript abundances were converted to transcripts per million (TPM) units, and rep1, 2 and 3 represent data from three piglets in the MOCK, JXA1 and JXA1/mAb-PN9cx3 groups.
DOI: 10.6084/m9.figshare.14227823
title: Additional file 4 of A broadly neutralizing monoclonal antibody induces broad protection against heterogeneous PRRSV strains in piglets

description: Additional file 4. Summary of PRRSV-JXA1-downregulated-mAb-PN9cx3-reversed genes. The transcript abundances were converted to transcripts per million (TPM) units, and rep1, 2 and 3 represent data from three piglets in the MOCK, JXA1 and JXA1/mAb-PN9cx3 groups.
DOI: 10.6084/m9.figshare.14227838.v1
title: Additional file 9 of A broadly neutralizing monoclonal antibody induces broad protection against heterogeneous PRRSV strains in piglets

description: Additional file 9. GO enrichment of PRRSV-HNhx-downregulated-mAb-PN9cx3-reversed genes. The GO terms and KEGG pathways enriched in PRRSV-HNhx-downregulated-mAb-PN9cx3-reversed pig genes are collected in Additional file 10. Sheet 1 shows the enriched biological process (BP)-associated GO terms. Sheet 2 shows the enriched KEGG pathways.
DOI: 10.15468/dl.m7x7c6
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Euphorbia marginata Pursh"
 ]
}

 The dataset includes 33 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021404-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.db64su
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nicolasia costata (Klatt) Thell."
 ]
}

 The dataset includes 123 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059087-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4vjsyt
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mussaenda paludosa E.M.A.Petit"
 ]
}

 The dataset includes 26 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059089-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4vc3v2
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monophyllaea elongata B.L.Burtt"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059091-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7kmfdu
title: Occurrence Download

description: A dataset containing 8345 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-73.044 9.59332,-73.53108 9.65297,-73.60066 9.4889,-73.15291 9.41728,-73.044 9.59332))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8345 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059090-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8xm3aj
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neolitsea reticulata Kosterm."
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059092-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6myawc
title: Occurrence Download

description: A dataset containing 344 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odontosoria deltoidea (C.Chr.) Lehtonen & Tuomisto"
 ]
}

 The dataset includes 344 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059093-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dsy2su
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myristica duplopunctata W.J.de Wilde"
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059094-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dq4h6f
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nicolasia felicioides (Hiern) S.Moore"
 ]
}

 The dataset includes 23 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059095-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.