cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26030/txs9-n227
title: Transcriptional analysis of dorsal skin from mice flown on the RR-6 mission

description: The objective of the Rodent Research-6 (RR-6) study was to evaluate muscle atrophy in mice during spaceflight and to test the efficacy of a novel therapeutic to mitigate muscle wasting. The experiment involved an implantable subcutaneous nanochannel delivery system (nDS; between scapula), which delivered the drug formoterol (FMT; a selective Î²2 adrenoceptor agonist), over the course of time. To this end, a cohort of forty 32-weeks-old female C57BL/6NTac mice were either sham operated. or implanted with vehicle or treatment-filled nDS, and launched in two Transporters (20 mice per Transporter) on SpaceX-13 on December 15, 2017. They were transferred to Rodent Habitats onboard the International Space Station (ISS), and maintained in microgravity for 29 days (N=20, Live Animal Return [LAR]), or >50 days (N=20, ISS Terminal). After 29 days, the 20 LAR animals were returned live to back to Earth on January 13, 2018. After splashdown, the animals were ambulatory on-ground for ~4 days, until all subjects were processed during one day of dissections. There were two Baseline groups of animals sacrificed (LAR Baseline & FLT Baseline; N=20; 40 animals; ~36 weeks old) at Kennedy Space Center (KSC; 12/9/17). A Ground Control group mimicked the Flight LAR group, which was housed at KSC, then shipped alive, to Novartisâ€™s facilities, where both the LAR and LAR Ground Control groups were processed (~41 weeks old; 1/16/18). All were anesthetized with isoflurane, blood samples were obtained by closed-chest cardiac puncture, and the animals were euthanized by exsanguination and thoracotomy. The 20 ISS Terminal mice were anesthetized via intraperitoneal injection of ketamine/xylazine/acepromazine over the course of a four days of dissections (2/6/18 until 2/9/18; 53-56 days after launch; 44 weeks old at time of on-orbit dissections). Blood samples and euthanasia were conducted the same as LAR and Baseline. Following blood draw and hind limb dissection, the ISS-terminal animal carcasses were wrapped in aluminum foil, placed in a ziploc bag and placed in storage at -80ËšC or colder until return. The ISS-terminal Ground Controls (at KSC) followed the same euthanasia timeline, methods, and preservation. The final processing of frozen ISS-terminal, frozen ISS-terminal Ground Controls and frozen 0-day FLT baseline animals were completed at Houston Methodist Research Institute, in Houston, TX (5/21/18 until 5/24/18). GeneLab received samples of dorsal skin from only sham treated animals (no drug treated animals) from the following groups Flight: LAR (n=9), ISS Terminal (n=9); Ground Controls: LAR GC (N=9), ISS Terminal GC (N=10), LAR Baseline (n=10), ISS Terminal Baseline (n=6). Total RNA was extracted and sequenced at a target depth of 60 M clusters per sample (ribodepleted, paired end 150).
DOI: 10.26030/hk50-2z37
title: Microbial Observatory (ISS-MO): Molecular characterization of Bacillus issensis, sp. nov., isolated from various quarters of the International Space Station

description: As part of an ongoing effort to catalogue microbial communities inhabiting the International Space Station (ISS), crew-associated environmental samples were collected from the Japanese Kibo, Russian, and US research modules. Initial analysis based on 16S rRNA gene sequencing identified 11 Bacillus isolates (two from Kibo Japanese Experiment Module (JEM), four from US Segment Harmony Node 2 and five from Russian Segment Zvezda module sites), all belonging to the Bacillus anthracis-B. cereus-B. thuringiensis group. Isolates were further characterized by whole genome comparative analysis. Each isolate was sequenced, assembled, and aligned against all members of the B. cereus sensu lato group. Based on genome size estimates (5.2 - 5.3 Mbp), strain nucleotide identity (>99.99%), and maximum likelihood phylogenetic placement, all isolates were found to exhibit a very high level of similarity. With respect to gene content, all isolates were inspected for cry proteins common to B. thuringiensis as well as toxins specific to B. cereus. No significant hits were found to any known cry genes, while full-length matches were found for multiple B. cereus toxin genes. Finally, the isolates were closely screened against B. anthracis genomes, and no B. anthracis signatures were identified. Notably, all isolates contained the plcR ancestral C allele and lacked significant hits to pXO1 and pXO2 plasmids and toxins. The collective results from the analysis confirm that these strains belong to a previously uncharacterized Bacillus species, hereafter referred to as Bacillus issensis. The type strain is ISSFR-003T (=NRRL B-65389T= DSMZ 101676T).
DOI: 10.25966/qq4z-4m04
title: Transcription profiling of activated human T cells induced by microgravity to identify apoptotic genes and other immune response genes

description: The purpose of this study was to search for microgravity-sensitive genes, specifically for apoptotic genes influenced by the microgravity environment and other genes related to immune response. Experiment Overall Design: Two-group design with paired samples, i.e., one 1G and one MMG culture came from the same donor. Therefore, 6 samples came from 3 different donors. Experiment Overall Design: Donor 1 :GSM96146,GSM96147 Experiment Overall Design: Donor 2: GSM96148, GSM96149 Experiment Overall Design: Donor 3: GSM96150,GSM96151 Experiment Overall Design: Total RNA was submitted to, and then labeled, hybridized and data generated by the Baylor College Medicine Microarray Core Facility (333E One Baylor Plaza, Houston, TX 77030).
DOI: 10.26030/6sg0-ng36
title: Effects of a Closed Space Environment on Gene Expression in Hair Follicles of Astronauts in the International Space Station

description: In recent times, long-term stay has become a common occurrence in the International Space Station (ISS). However, adaptation to the space environment can sometimes pose physiological problems to the astronauts after their return. Therefore, it is important to develop healthcare technologies for astronauts. In this study, hair, an easy-to-obtain sample, was identified as the candidate. In order to investigate the genetic changes in human hair during space flight, the hair follicles of 10 astronauts were analyzed by DNA microarray and real time q-PCR analyses. Space environment induced gene expression of hair follicles of astronaut was measured 6 differnent times included 2 in flight on orbit. Ten independent experiments were performed on differing astronauts. and the sampling day was differed for each astronaut because of their schedules.
DOI: 10.26030/cxya-dg98
title: Approaches for Surveying Cosmic Radiation Damage in Large Populations of Arabidopsis thaliana Seeds- an Antarctic Example

description: The Cosmic Ray Exposure Sequencing Science (CRESS) payload system is a proof of concept experiment to assess the genomic impact of space radiation on seeds. CRESS was designed as a secondary payload for the December 2016 high-altitude, high-latitude, and long-duration balloon flight carrying the Boron And Carbon Cosmic Rays in the Upper Stratosphere (BACCUS) experimental hardware. Investigation of the biological effects of Galactic Cosmic Radiation (GCR), particularly those of ions with High-Z and Energy (HZE), is of interest due to the genomic damage this type of radiation inflicts. The biological effects of upper-stratospheric mixed radiation above Antarctica (ANT) were sampled using Arabidopsis thaliana seeds and were compared to those resulting from a controlled simulation of GCR at Brookhaven National Laboratory (BNL) and to laboratory control seed. The payload developed for Antarctica exposure was broadly designed to 1U CubeSat specifications (10cmx10cmx10cm, <1.33kg), maintained 1 atm internal pressure, and carried an internal cargo of four seed trays (about 580,000 seeds) and twelve CR-39 Solid-State Nuclear Track Detectors (SSNTDs). The irradiated seeds were recovered, sterilized and grown on Petri plates for phenotypic screening. BNL and ANT M0 seeds showed significantly reduced germination rates and elevated somatic mutation rates when compared to non-irradiated controls, with the BNL mutation rate also being significantly higher than that of ANT. Genomic DNA from mutants of interest was evaluated with whole-genome sequencing using PacBio SMRT technology. Sequence data revealed the presence of an array of genome structural variants in the genomes of M0 and M1 mutant plants.
DOI: 10.26030/w5pk-ny60
title: Microbial Observatory (ISS-MO): Antimicrobial resistance genes

description: The environmental samples were collected with the polyester wipes from eight different locations in the International Space Station (ISS) during two consecutive sampling sessions (three months apart) within the ISS Microbial Observatory Experiment. DNA extracted from each of the samples was used to create amplicon libraries based on customized panel of 500 antimicrobial resistance genes followed by next-generation sequencing. This is the first study of that shows the reservoir of antimicrobial genes in the ISS. The International Space Station (ISS) as a closed built environment has its own environmental microbiome which is shaped by microgravity, radiation, and limited human presence. The microbial diversity associated with ISS environmental surfaces was investigated during this study. Polyester wipes and contact slides were used for sampling of eight various surface locations on the ISS at different time periods. The samples were retrieved and analyzed immediately upon the return to the Earth (via Soyuz TMA-14M or Dragon capsule from SpaceX). After surface sample collection, contact slides containing nutrient media for the growth of bacteria and fungi were incubated at 25˚C. The polyester wipes were processed to measure microbial burden (R2A, Blood Agar, and Potato Dextrose Agar) and recover cultivable bacteria as well as fungi. Subsequently, viable microbial burden was assessed using Adenosine Triphosphate (ATP) assay, and quantitative polymerase chain reaction (PCR) methods after propidium monoazide (PMA) treatment. The 16S-tag and metagenome analyses were used to elucidate viable microbial diversity. The cultivable bacterial population yield from the polyester wipes was very high (5 to 7-logs) when compared with the contact slides (102 to 103 CFU/m2). The PMA-qPCR analysis showed considerable variation of viable bacterial population (105 to 109 16S rDNA gene copies/m2) among locations sampled. Unlike contact slides, polyester wipes cover much larger sample surface (~1 m2) and produce much more reliable results of the microbial diversity of the ISS covering both cultivable and non-cultivable species. The cultivable, total, and viable microbial diversity was determined utilizing state-of-the art molecular techniques. The implementation of the PMA assay before DNA extraction allowed distinguishing viable microorganisms, which is crucial for determining their role to the crew health, the ISS maintenance and the general knowledge of the closed environmentally controlled built systems.
DOI: 10.26030/x5np-vd68
title: Gene expression profiling of C. elegans under various thermal conditions

description: To realistically evaluate the effects of the environment in space, it is necessary to understand the effects of external factors during sample transport from Earth to space. The present study focused on temperature, profiling the altered gene expression that develops under low cultivation temperatures in C. elegans, used as a space life science model. The 7903 genes were selected as differentially expressed genes, and divided into five sets with similar expression patterns using k-means clustering. Results from Gene Ontology analysis are significantly indicated that the cell cycle related genes, and the TGF?/insulin-like signal pathway related genes changed. The TGF?/insulin-like signal pathway is expected to be activated due to low temperatures, as well as by other stressors. To determine the genes whose expression changed four thermal conditions (10, 15, 20, and 25 ¡C), DNA microarray analysis was performed. The data consisted of 12 samples, consisting of three biological replicates at each temperature.
DOI: 10.26030/jx41-b816
title: Dynamic gene expression response to altered gravity in human T cells (parabolic flight)

description: We investigated differentially regulated genes in human Jurkat T lymphocytic cells in 20s and 5min microgravity and in hypergravity and compared expression profiles to identify potential gravity-regulated genes and adaptation processes. This dataset is part of a series of three, and the other two datasets are deposited in GLDS-188 and GLDS-189.
DOI: 10.5519/qd.qz5vkzko
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (74128 records)
DOI: 10.21227/t3jy-w317
title: A Large-Scale Dataset for Active Fire Detection/Segmentation (Landsat-8)

description: This dataset was created from all Landsat-8 images from South America in the year 2018. More than 31 thousand images were processed (15 TB of data), and approximately on half of them active fire pixels were found. The Landsat-8 sensor has 30 meters of spatial resolution (1 panchromatic band of 15m), 16 bits of radiometric resolution and 16 days of temporal resolution (revisit). The images in our dataset are in TIFF format with 10 bands (excluding the 15m panchromatic band). We cropped the original Landsat-8 scenes into image patches with 128 x 128 pixels by using a stride overlap of 64 pixels (vertical and horizontal). The masks are in binary format where True (1) represents fire and False (0) represents background and they were generated from the conditions set by Schroeder et al. (2016).
DOI: 10.5281/zenodo.3923083
title: msr2020_new_pullreq_restricted

description: This is the dataset with restricted access for MSR 2020 data showcase paper <em>"On the Shoulders of Giants: A New Dataset for Pull-based Development Research" .</em>
DOI: 10.5281/zenodo.3923082
title: msr2020_new_pullreq_restricted

description: This is the dataset with restricted access for MSR 2020 data showcase paper <em>"On the Shoulders of Giants: A New Dataset for Pull-based Development Research" .</em>
DOI: 10.18112/openneuro.ds002982.v1.0.0
title: _test_julien
DOI: 10.18112/openneuro.ds002985.v1.0.0
title: _test_julien
DOI: 10.18112/openneuro.ds002986.v1.0.0
title: _test_julien
DOI: 10.5281/zenodo.3923113
title: Wind observations in a 22 m tower at El Palmar state reserve, Yucatan, Mexico

description: This database contains wind measurements, at the ecohydrological monitoring site of “El Palmar” state reserve (21.0293 ° N, 90.0637 ° W; 1.86 mamsl), Yucatan, Mexico. The acquisition of these data was performed from December 7th 2016 to August 21st 2019, in a 22 m Eddy-Covariance tower, using a 3D sonic anemometer (WindMaster Pro, Gill Instruments, UK) connected to a LI-7550 Interface Unit. Data was processed using the EddyPro 6.2.2 software, and are presented in averages of every half hour. A quality control was performed on the data. For more information visit: http://ocse.mx/en/experimento/torre-de-flujos-palmar
description: Funding Organization (s): Consejo Nacional de Ciencia y Tecnología CONACYT (415123), Laboratorio Nacional de Resiliencia Costera (271544)
DOI: 10.5281/zenodo.3923126
title: Wind velocity vertical profile in a 50 m wind mast at Sisal, Yucatán, Mexico

description: A meteorological mast, instrumented with sonic anemometers was implemented during the years 2010-2014, in order to study high frequency wind data at five different heights above the ground. The mast is 50 m height, located about 100 m from the shoreline at the Sisal campus of UNAM. An automated acquisition system recorded raw data in a database (server) directly through a RF link. For more information visit: http://ocse.mx/en/experimento/torre-sisal
description: Funding Organization (s): Consejo Nacional de Ciencia y Tecnología y Comisión Federal de Electricidad (CONACYT-CFE 89073), Laboratorio Nacional de Resiliencia Costera (LANRESC LN271544)
description: {"references": ["Figueroa-Espinoza, B., Salles, P., & Zavala-Hidalgo, J. (2014). On the wind power potential in the northwest of the Yucatan Peninsula in Mexico. Atm\u00f3sfera, 27(1), 77-89."]}
DOI: 10.5281/zenodo.3908791
title: Wind velocity vertical profile in a 50 m wind mast at Sisal, Yucatán, Mexico

description: A meteorological mast, instrumented with sonic anemometers was implemented during the years 2010-2014, in order to study high frequency wind data at five different heights above the ground. The mast is 50 m height, located about 100 m from the shoreline at the Sisal campus of UNAM. An automated acquisition system recorded raw data in a database (server) directly through a RF link. For more information visit: http://ocse.mx/en/experimento/torre-sisal
description: Funding Organization (s): Consejo Nacional de Ciencia y Tecnología y Comisión Federal de Electricidad (CONACYT-CFE 89073), Laboratorio Nacional de Resiliencia Costera (LANRESC LN271544)
description: {"references": ["Figueroa-Espinoza, B., Salles, P., & Zavala-Hidalgo, J. (2014). On the wind power potential in the northwest of the Yucatan Peninsula in Mexico. Atm\u00f3sfera, 27(1), 77-89."]}
DOI: 10.5281/zenodo.3923125
title: GRAPH-BASED DATA FUSION

description: Code and datasets used to replicate the results in "GRAPH-BASED DATA FUSION APPLIED TO: CHANGE DETECTION AND BIOMASS ESTIMATION IN RICE CROPS"
DOI: 10.5281/zenodo.3923124
title: GRAPH-BASED DATA FUSION

description: Code and datasets used to replicate the results in "GRAPH-BASED DATA FUSION APPLIED TO: CHANGE DETECTION AND BIOMASS ESTIMATION IN RICE CROPS"
DOI: 10.5281/zenodo.3923118
title: Revista Gepros: Indicadores bibliométricos (Base SCOPUS e Google Scholar)

description: A Revista GEPROS é um periódico eletrônico e de acesso livre publicado pelo Departamento de Engenharia de Produção da Universidade Estadual Paulista (UNESP), Campus Bauru, atendendo a professores, pesquisadores, pós-graduandos e graduandos, e profissionais que atuam nas áreas de Engenharia de Produção e correlatas. Seu objetivo é contribuir para a divulgação e disseminação de conhecimentos na área de Engenharia de Produção na forma de artigos científicos, combinando atributos como, elevado padrão acadêmico e real valor prático para o desenvolvimento da sociedade. <strong>Os arquivos apresentam os dados bibliométricos coletados das bases - Scopus e Google Scholar.</strong>
DOI: 10.5281/zenodo.3923117
title: Revista Gepros: Indicadores bibliométricos (Base SCOPUS e Google Scholar)

description: A Revista GEPROS é um periódico eletrônico e de acesso livre publicado pelo Departamento de Engenharia de Produção da Universidade Estadual Paulista (UNESP), Campus Bauru, atendendo a professores, pesquisadores, pós-graduandos e graduandos, e profissionais que atuam nas áreas de Engenharia de Produção e correlatas. Seu objetivo é contribuir para a divulgação e disseminação de conhecimentos na área de Engenharia de Produção na forma de artigos científicos, combinando atributos como, elevado padrão acadêmico e real valor prático para o desenvolvimento da sociedade. <strong>Os arquivos apresentam os dados bibliométricos coletados das bases - Scopus e Google Scholar.</strong>
DOI: 10.18112/openneuro.ds002987.v1.0.0
title: _test_julien
DOI: 10.3886/e114576v1-25163
title: Replication data for: Only One Tree from Each Seed? Environmental Effectiveness and Poverty Alleviation in Mexico's Payments for Ecosystem Services Program

description: Environmental conditional cash transfers are popular but their impacts are not well understood. We evaluate land cover and wealth impacts of a federal program that pays landowners for protecting forest. Panel data for program beneficiaries and rejected applicants allow us to control for fixed differences and time trends affecting both groups. We find the program reduces the expected land cover loss by 40-51 percent and generates small but positive poverty alleviation. Environmental gains are higher where poverty is low while household gains are higher where deforestation risk is low, illustrating the difficulty of meeting multiple policy goals with one tool. (JEL I32, I38, O13, O15, Q23, Q28, Q56)
DOI: 10.3886/e117124v1
title: Code for: Artificial Intelligence in Healthcare? Evidence from online job postings

description: This paper documents a puzzle. Despite the numerous popular press discussions of artificial intelligence (AI) in healthcare, there has been relatively little adoption. Using data from Burning Glass Technologies on millions of online job postings, we find that AI adoption in healthcare remains substantially lower than in most other industries, and that under 3% of the hospitals in our data posted any jobs requiring AI skills from 2015-2018. The low adoption rates mean any statistical analysis is limited. Nevertheless, the adoption we do observe shows that larger hospitals, larger counties, and integrated salary model hospitals are more likely to adopt.
DOI: 10.3886/e117124
title: Code for: Artificial Intelligence in Healthcare? Evidence from online job postings

description: This paper documents a puzzle. Despite the numerous popular press discussions of artificial intelligence (AI) in healthcare, there has been relatively little adoption. Using data from Burning Glass Technologies on millions of online job postings, we find that AI adoption in healthcare remains substantially lower than in most other industries, and that under 3% of the hospitals in our data posted any jobs requiring AI skills from 2015-2018. The low adoption rates mean any statistical analysis is limited. Nevertheless, the adoption we do observe shows that larger hospitals, larger counties, and integrated salary model hospitals are more likely to adopt.
DOI: 10.3886/e111081v3
title: Militants in retreat

description: Datasets for article - Militants in retreat: how terrorists behave when they are losing.
DOI: 10.3886/e111081
title: Militants in retreat

description: Datasets for article - Militants in retreat: how terrorists behave when they are losing.
DOI: 10.3886/e111081v2
title: Militants in retreat

description: Datasets for article - Militants in retreat: how terrorists behave when they are losing.
DOI: 10.7910/dvn/73loy9/nknqlp
title: replication.do

description: :unav
DOI: 10.21227/w0rj-5e64
title: A Large-Scale Dataset for Active Fire Detection/Segmentation (Landsat-8)

description: This dataset was created from all Landsat-8 images from South America in the year 2018. More than 31 thousand images were processed (15 TB of data), and approximately on half of them active fire pixels were found. The Landsat-8 sensor has 30 meters of spatial resolution (1 panchromatic band of 15m), 16 bits of radiometric resolution and 16 days of temporal resolution (revisit). The images in our dataset are in TIFF format with 10 bands (excluding the 15m panchromatic band). We cropped the original Landsat-8 scenes into image patches with 128 x 128 pixels by using a stride overlap of 64 pixels (vertical and horizontal). The masks are in binary format where True (1) represents fire and False (0) represents background and they were generated from the conditions set by Schroeder et al. (2016).
DOI: 10.5281/zenodo.3912049
title: Wikidata Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.3912048
title: Wikidata Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.17632/mj2zfsz6w8.1
title: Data for: Reclamation shifts the evolutionary paradigms of tidal channel networks in the Yellow River Delta, China

description: Yellow River data
DOI: 10.5281/zenodo.3923169
title: CCD Scan 8032: NiFe_8032

description: Calibration data set measured at Beamline 4.0.2 of the Advanced Light Source (Berkeley, CA) using the resonant soft x-ray scattering endstation. <em>Scan ID</em>: 8032 Calibration standard with 200-nm X 200-nm pitch