cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.55z96s
title: Occurrence Download

description: A dataset containing 816 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Carabus splendens Olivier, 1790",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 816 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095597-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvtmq8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pyrus voronovii Rubtzov)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095598-240626123714530/datasets/export for details.
DOI: 10.15468/dl.srnpft
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Kosswigianella exigua (Boheman, 1847)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 170 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095599-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcbwjs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Oxyopes carvajali Franganillo, 1918",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095600-240626123714530/datasets/export for details.
DOI: 10.15468/dl.3qkjuf
title: Occurrence Download

description: A dataset containing 2551 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ophisops elegans Ménétries, 1832",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 2551 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095602-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.22616239.v1
title: Additional file 5 of Genome-wide identification and analysis of the SUPPRESSOR of MAX2 1-LIKE gene family and its interaction with DWARF14 in poplar

description: Additional file 5: Supplementary Table S4. The Ks and Ka values of duplicated gene pairs of interspecies genomic collinearity.
DOI: 10.6084/m9.figshare.7936211.v1
title: MOESM6 of Degradation of bamboo lignocellulose by bamboo snout beetle Cyrtotrachelus buqueti in vivo and vitro: efficiency and mechanism

description: Additional file 6: Table S5. The annotation of genes in CAZyme in the transcriptome.
DOI: 10.6084/m9.figshare.22616242.v1
title: Additional file 6 of Genome-wide identification and analysis of the SUPPRESSOR of MAX2 1-LIKE gene family and its interaction with DWARF14 in poplar

description: Additional file 6: Supplementary Table S5. Conserved motif sequence of PtSMXLs.
DOI: 10.6084/m9.figshare.19470518
title: Additional file 1 of Distribution and identification of Mycobacterium tuberculosis lineage in Kashgar prefecture

description: Additional file 1. Samples information.
DOI: 10.6084/m9.figshare.22616236
title: Additional file 4 of Genome-wide identification and analysis of the SUPPRESSOR of MAX2 1-LIKE gene family and its interaction with DWARF14 in poplar

description: Additional file 4: Supplementary Table S3. The duplication relationships between PtSMXLs and AtSMXLs, and between PtSMXLs and VvSMXLs. The genes of poplar are represented by gene names, and the genes of Arabidopsis and grape are represented by genome sequence numbers. The lines indicate that the two genes do not have collinearity.
DOI: 10.6084/m9.figshare.7936199.v1
title: MOESM4 of Degradation of bamboo lignocellulose by bamboo snout beetle Cyrtotrachelus buqueti in vivo and vitro: efficiency and mechanism

description: Additional file 4: Table S3. Unigenes annotated in CAZyme.
DOI: 10.6084/m9.figshare.22616236.v1
title: Additional file 4 of Genome-wide identification and analysis of the SUPPRESSOR of MAX2 1-LIKE gene family and its interaction with DWARF14 in poplar

description: Additional file 4: Supplementary Table S3. The duplication relationships between PtSMXLs and AtSMXLs, and between PtSMXLs and VvSMXLs. The genes of poplar are represented by gene names, and the genes of Arabidopsis and grape are represented by genome sequence numbers. The lines indicate that the two genes do not have collinearity.
DOI: 10.6084/m9.figshare.22616239
title: Additional file 5 of Genome-wide identification and analysis of the SUPPRESSOR of MAX2 1-LIKE gene family and its interaction with DWARF14 in poplar

description: Additional file 5: Supplementary Table S4. The Ks and Ka values of duplicated gene pairs of interspecies genomic collinearity.
DOI: 10.6084/m9.figshare.7936199
title: MOESM4 of Degradation of bamboo lignocellulose by bamboo snout beetle Cyrtotrachelus buqueti in vivo and vitro: efficiency and mechanism

description: Additional file 4: Table S3. Unigenes annotated in CAZyme.
DOI: 10.6084/m9.figshare.22616242
title: Additional file 6 of Genome-wide identification and analysis of the SUPPRESSOR of MAX2 1-LIKE gene family and its interaction with DWARF14 in poplar

description: Additional file 6: Supplementary Table S5. Conserved motif sequence of PtSMXLs.
DOI: 10.6084/m9.figshare.22616245
title: Additional file 7 of Genome-wide identification and analysis of the SUPPRESSOR of MAX2 1-LIKE gene family and its interaction with DWARF14 in poplar

description: Additional file 7: Supplementary Table S6. The primer designed for qRT-PCR and vector construction.
DOI: 10.6084/m9.figshare.7936211
title: MOESM6 of Degradation of bamboo lignocellulose by bamboo snout beetle Cyrtotrachelus buqueti in vivo and vitro: efficiency and mechanism

description: Additional file 6: Table S5. The annotation of genes in CAZyme in the transcriptome.
DOI: 10.6084/m9.figshare.19470580
title: Additional file 7 of Assessment of the effectiveness of BOPPPS-based hybrid teaching model in physiology education

description: Additional file 7.
DOI: 10.6084/m9.figshare.7936205
title: MOESM5 of Degradation of bamboo lignocellulose by bamboo snout beetle Cyrtotrachelus buqueti in vivo and vitro: efficiency and mechanism

description: Additional file 5: Table S4. The CAZyme classification at the family level.
DOI: 10.5281/zenodo.10627622
title: Simulated assemblies for "Multi-genome synteny detection using minimizer graph mappings"

description: ntSynt is a multi-genome synteny detection tool that utilizes lightweight minimizer graphs to simultaneously map multiple genomes to one another. We tested ntSynt on multiple ~3 Gbp genomes, and show that it computes high-quality macrosynteny blocks quickly and with a low memory footprint.

Here, we provide human assemblies with simulated rearrangements at various variant rates. The T2T human reference genome was rearranged in 4 separate runs using SURVIVOR, and SNVs (single nucleotide variants) and indels (small insertions and deletions) were introduced at various rates using pIRS. SURVIVOR was configured to simulate two translocations between 10–50 kbp, 20 inversions between 10–50 kbp and 20 indels between 50–100 kbp.  Each gzipped tarball provided contains the 4 rearranged human genomes at the different SNV (-s) and indel (-d) rates.
DOI: 10.5281/zenodo.10627623
title: Simulated assemblies for "Multi-genome synteny detection using minimizer graph mappings"

description: ntSynt is a multi-genome synteny detection tool that utilizes lightweight minimizer graphs to simultaneously map multiple genomes to one another. We tested ntSynt on multiple ~3 Gbp genomes, and show that it computes high-quality macrosynteny blocks quickly and with a low memory footprint.

Here, we provide human assemblies with simulated rearrangements at various variant rates. The T2T human reference genome was rearranged in 4 separate runs using SURVIVOR, and SNVs (single nucleotide variants) and indels (small insertions and deletions) were introduced at various rates using pIRS. SURVIVOR was configured to simulate two translocations between 10–50 kbp, 20 inversions between 10–50 kbp and 20 indels between 50–100 kbp.  Each gzipped tarball provided contains the 4 rearranged human genomes at the different SNV (-s) and indel (-d) rates.
DOI: 10.6084/m9.figshare.22607821.v1
title: Additional file 2 of Haplotype variations of sucrose phosphate synthase B gene among sugarcane accessions with different sucrose content

description: Additional file 2. The comparative information between the 39 haplotypes of SPSB gene and the reference sequence of AP85-411 genome.
DOI: 10.6084/m9.figshare.22616261.v1
title: Additional file 2 of Integrated multi-omic analysis of low-grade ovarian serous carcinoma collected from short and long-term survivors

description: Additional file 2: Table S1. Patient characteristics and total number of  LGSOC samples with each type of omics analyses performed. Table S2. List of 409 genes in the Ion AmpliSeq Comprehensive Cancer Panel assessed by targeted sequencing. Table S3. SNVs and InDels identified by targeted sequencing. Table S4. Whole-genome sequencing coverage data and variants detected. Table S5. Summary of missense and InDel somatic mutations in exon regions with variant allele frequency &gt; 15%. Table S6. All missense and InDel somatic mutations in exon regions with variant allele read count ≥ 3. Table S7. Regions with CNVs detected in each sample. Table S8. Expression values from RNAseq analysis of 12 LGSOC samples. Table S9. Global proteomic data. Table S10. Differentially expressed proteins between short-term and long-term survivors. Table S11. Proteins with higher expression in short-term survivors with targeted drugs. Table S12. Enrichment of pathways correlated with differentially expressed Protein between long-term and short-term survivors by Metascape analysis. Table S13. Characteristics of LGSOC_Inova Validation Samples. Table S14. Global phosphosites detected. Table S15. List of 42 phosphosites of specific proteins that were significantly differentially expressed between LGSOC tumors from long-term survivors and those from short-term survivors. Table S16. Enrichment of pathways correlated with differentially expressed phosphosites in Protein between long-term and short-term survivors by Metascape analysis.
DOI: 10.6084/m9.figshare.7936250.v1
title: MOESM9 of Degradation of bamboo lignocellulose by bamboo snout beetle Cyrtotrachelus buqueti in vivo and vitro: efficiency and mechanism

description: Additional file 9: Table S6. The primer sequence of qRT-PCR.
DOI: 10.6084/m9.figshare.22607821
title: Additional file 2 of Haplotype variations of sucrose phosphate synthase B gene among sugarcane accessions with different sucrose content

description: Additional file 2. The comparative information between the 39 haplotypes of SPSB gene and the reference sequence of AP85-411 genome.
DOI: 10.6084/m9.figshare.7936250
title: MOESM9 of Degradation of bamboo lignocellulose by bamboo snout beetle Cyrtotrachelus buqueti in vivo and vitro: efficiency and mechanism

description: Additional file 9: Table S6. The primer sequence of qRT-PCR.
DOI: 10.6084/m9.figshare.22607834
title: Additional file 2 of SMYD3 associates with the NuRD (MTA1/2) complex to regulate transcription and promote proliferation and invasiveness in hepatocellular carcinoma cells

description: Additional file 2. Raw date of gene expression and log2fc of differentially expressed genes (DEGs) between 5 pairs of HCC and adjacent normal tissues in RNA seq results.
DOI: 10.6084/m9.figshare.22607837
title: Additional file 3 of SMYD3 associates with the NuRD (MTA1/2) complex to regulate transcription and promote proliferation and invasiveness in hepatocellular carcinoma cells

description: Additional file 3. Mass spectrometry identification data for the interactomics of SMYD3 (the protein score equal to or higher than two).
DOI: 10.6084/m9.figshare.22607834.v1
title: Additional file 2 of SMYD3 associates with the NuRD (MTA1/2) complex to regulate transcription and promote proliferation and invasiveness in hepatocellular carcinoma cells

description: Additional file 2. Raw date of gene expression and log2fc of differentially expressed genes (DEGs) between 5 pairs of HCC and adjacent normal tissues in RNA seq results.
DOI: 10.35092/yhjc11606319
title: Effects of Remote Limb Ischemic Conditioning on muscle strength in healthy young adults: A randomized controlled trial

description: This is the data from a clinical trial that assessed the effects of remote limb ischemic conditioning on muscle strength in healthy young adults. The data includes demographic details, ischemic conditioning parameters, and strength measures.<br>

ClinicalTrials.gov Identifier: NCT03512028<br>
DOI: 10.15131/shef.data.23624259.v1
title: Dataset for Self-assembled InAs QDs on InGaAsP/InP(100) by modified droplet epitaxy in MOVPE around the telecom C-band for quantum photonic application

description: Dataset for Self-assembled InAs QDs on InGaAsP/InP(100) by modified droplet epitaxy in MOVPE around the telecom C-band for quantum photonic application
DOI: 10.6084/m9.figshare.22616305.v1
title: Additional file 7 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 7: Table S4. GO analysis of the LNM-specific DEGs.
DOI: 10.6084/m9.figshare.22616308
title: Additional file 8 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 8: Table S5. GO analysis of the nonLNM-specific DEGs.
DOI: 10.6084/m9.figshare.22616335
title: Additional file 17 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 17: Table S14. Pathway enrichment analysis of the PPI network associated with the 10-mRNA signature.
DOI: 10.6084/m9.figshare.22616329
title: Additional file 15 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 15: Table S12. GSEA analysis of Reactome pathways enrichment of DEGs related to the 10-mRNA signature.
DOI: 10.6084/m9.figshare.22616335.v1
title: Additional file 17 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 17: Table S14. Pathway enrichment analysis of the PPI network associated with the 10-mRNA signature.
DOI: 10.6084/m9.figshare.22616317
title: Additional file 11 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 11: Table S8. Pathway enrichment analysis of the nonLNM-specific DEGs.
DOI: 10.6084/m9.figshare.22616326
title: Additional file 14 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 14: Table S11. GSEA analysis of KEGG pathways enrichment of DEGs related to the 10-mRNA signature.
DOI: 10.6084/m9.figshare.22616299
title: Additional file 5 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 5: Table S2. The sequence of primers in this study.
DOI: 10.6084/m9.figshare.22616299.v1
title: Additional file 5 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 5: Table S2. The sequence of primers in this study.
DOI: 10.6084/m9.figshare.22616305
title: Additional file 7 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 7: Table S4. GO analysis of the LNM-specific DEGs.
DOI: 10.6084/m9.figshare.22616308.v1
title: Additional file 8 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 8: Table S5. GO analysis of the nonLNM-specific DEGs.
DOI: 10.6084/m9.figshare.22616311
title: Additional file 9 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 9: Table S6. GO analysis of the coDEGs.
DOI: 10.6084/m9.figshare.22616311.v1
title: Additional file 9 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 9: Table S6. GO analysis of the coDEGs.
DOI: 10.6084/m9.figshare.22616320
title: Additional file 12 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 12: Table S9. Pathway enrichment analysis of the coDEGs.
DOI: 10.6084/m9.figshare.22616323
title: Additional file 13 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 13: Table S10. GSEA analysis of GO enrichment of DEGs related to the 10-mRNA signature.
DOI: 10.6084/m9.figshare.22616323.v1
title: Additional file 13 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 13: Table S10. GSEA analysis of GO enrichment of DEGs related to the 10-mRNA signature.
DOI: 10.6084/m9.figshare.22616332.v1
title: Additional file 16 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 16: Table S13. PPI network associated with the 10-mRNA signature.
DOI: 10.6084/m9.figshare.22616320.v1
title: Additional file 12 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 12: Table S9. Pathway enrichment analysis of the coDEGs.
DOI: 10.6084/m9.figshare.22616332
title: Additional file 16 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 16: Table S13. PPI network associated with the 10-mRNA signature.
DOI: 10.6084/m9.figshare.22616326.v1
title: Additional file 14 of Identification of critical prognosis signature associated with lymph node metastasis of stomach adenocarcinomas

description: Additional file 14: Table S11. GSEA analysis of KEGG pathways enrichment of DEGs related to the 10-mRNA signature.
DOI: 10.6084/m9.figshare.12130680
title: Supplementary material from Extraction of alumina from alumina rich coal gangue by a hydro-chemical process

description: Vast quantities of gangue from coal mining and processing have accumulated over the years and caused significant economic and environmental problems in China. For high-added value utilization of alumina rich coal gangue (ARCG), a mild hydro-chemical process was investigated to extract alumina. The influences of NaOH concentration, mass ratio of alkali to gangue, reaction temperature and reaction time were systematically studied. An alumina extraction rate of 94.68% was achieved at the condition of NaOH concentration 47.5%, alkali to gangue ratio of 6, reaction temperature of 260°C and reaction time of 120 min. The obtained leaching residues were characterized through X-ray diffraction, scanning electron microscopy and energy-dispersive spectrometer. Research confirmed that kaolinite the main alumina-bearing phase of ARCG can be decomposed and transformed to Na<sub>8</sub>Al<sub>6</sub>Si<sub>6</sub>O<sub>24</sub>(OH)<sub>2</sub>(H<sub>2</sub>O)<sub>2</sub> and Ca<sub>2</sub>Al<sub>2</sub>SiO<sub>6</sub>(OH)<sub>2</sub> at relatively low temperature and short reaction time. Additionally, Na<sub>8</sub>Al<sub>6</sub>Si<sub>6</sub>O<sub>24</sub>(OH)<sub>2</sub>(H<sub>2</sub>O)<sub>2</sub> and Ca<sub>2</sub>Al<sub>2</sub>SiO<sub>6</sub>(OH)<sub>2</sub> are unstable and will transform to alumina-free phase NaCaHSiO<sub>4</sub> under the optimal conditions, which is the major reason for high alumina extraction rates.
DOI: 10.6084/m9.figshare.14227787.v1
title: Additional file 1 of Regression patterns of uveal melanoma after iodine-125 plaque brachytherapy

description: Additional file 1.
DOI: 10.6084/m9.figshare.14227787
title: Additional file 1 of Regression patterns of uveal melanoma after iodine-125 plaque brachytherapy

description: Additional file 1.
DOI: 10.6084/m9.figshare.12654974
title: Additional file 10 of Molecular evolution of the ATP-binding cassette subfamily G member 2 gene subfamily and its paralogs in birds

description: Additional file 10. Expression of the ABCG2 and ABCG2-like genes in mallards (Anas platyrhynchos).
DOI: 10.6084/m9.figshare.12654980.v1
title: Additional file 12 of Molecular evolution of the ATP-binding cassette subfamily G member 2 gene subfamily and its paralogs in birds

description: Additional file 12. Multiple sequence alignments of the ABCG2 and ABCG2-like genes with full-length amino acid sequences.
DOI: 10.6084/m9.figshare.14752069.v1
title: Additional file 12 of SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment

description: Additional file 11: Table S2. Top 100 random forest importance ranks and GreenGenes taxonomy from nares, forehead, stool, and inside floor samples.
DOI: 10.6084/m9.figshare.12654977
title: Additional file 11 of Molecular evolution of the ATP-binding cassette subfamily G member 2 gene subfamily and its paralogs in birds

description: Additional file 11. Chromosomal location of ABCG2 gene subfamily members in some fishes.
DOI: 10.6084/m9.figshare.14752069
title: Additional file 12 of SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment

description: Additional file 11: Table S2. Top 100 random forest importance ranks and GreenGenes taxonomy from nares, forehead, stool, and inside floor samples.
DOI: 10.6084/m9.figshare.12654974.v1
title: Additional file 10 of Molecular evolution of the ATP-binding cassette subfamily G member 2 gene subfamily and its paralogs in birds

description: Additional file 10. Expression of the ABCG2 and ABCG2-like genes in mallards (Anas platyrhynchos).
DOI: 10.6084/m9.figshare.22607905.v1
title: Additional file 1 of Morbid obesity impacts mortality among inpatients with type a aortic dissection: an analysis of the national inpatient sample

description: Additional file 1. Table S1: List of ICD-9/10 procedure codes for identifying T(A)AD patients and other other common comorbidities.