cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19552441.v2
title: AMIGOS III data (usage examples and benchmark analysis)

description: This entry includes all materials used to generate the figures and tables in the AMIGOS III publication (Shine et al., 2022). <br> AMIGOSIII-plugin-code.zip contains the code for the AMIGOS III PyMOL plugin, which can also be found at the following page: https://github.com/pylelab/AMIGOSIII. <br> Files beginning with "4en5" were used to generate Figure 1. This includes the 4en5.pdb file, which was used as an input for the AMIGOS III PyMOL plugin, and the following five output files, which were generated using the AMIGOS III NARama feature: 4en5_eta_theta_plot.png (an eta vs theta plot), 4en5_eta_theta_prime_plot.png (an eta' vs theta' plot), 4en5_nucleic_worm_plot.png (a 3D plot of nucleotide position, eta, and theta), 4en5_eta_theta.csv (a spreadsheet of eta and theta values), and 4en5_eta_theta_prime.csv (a spreadsheet of eta' and theta' values). <br> Files beginning with "7mk1-chainC" were used to generate Figure S2. This includes the 7mk1.pdb file, which was used as an input for the AMIGOS III PyMOL plugin, and the following five output files, which were generated using the AMIGOS III NARama feature: 7mk1-chainC_eta_theta_plot.png (an eta vs theta plot), 7mk1-chainC_eta_theta_prime_plot.png (an eta' vs theta' plot), 7mk1-chainC_nucleic_worm_plot.png (a 3D plot of nucleotide position, eta, and theta), 7mk1-chainC_eta_theta.csv (a spreadsheet of eta and theta values), and 7mk1-chainC_eta_theta_prime.csv (a spreadsheet of eta' and theta' values). <br> The AMIGOSIII-TableS1-FigureS1-ata.xlsx file contains the benchmark data underlying TableS1 and FigureS1, which compares the performance of the motif searching feature of AMIGOS III with the Perl program PRIMOS. <br>
DOI: 10.6084/m9.figshare.20010096.v1
title: Production of copper-based metallic glasses: evolution of the phases during mechanical alloying

description: ABSTRACTIn this study, different, copper-based materials were fabricated under equal milling conditions (SPEX 8000D, argon atmosphere, stearic acid, BPR=10:1) and variable amounts of time, from 1 to 120 hours, in order to compare the microstructural changes during the process. The materials were: Pure copper; Cu-Ni alloys; Cu-Zr alloys; and Cu-Ni-Zr alloys. Subsequent to milling, the samples were measured with X-Ray Diffraction, Electron Transmission Microscopy, and Differential Scanning Calorimetry. According to the results, copper, upon being subjected to the process, reaches a crystallite size that tends towards an asymptote starting at 5 hours. In the Cu-Ni system, instead of observing a microstructural refinement during this same period, there was rather a total solubilization of the nickel into the copper (40-60 and50-50), and of the copper into the nickel (60-40). As for the Cu-Zr binary system, it was found that, for five hours as well, the system was practically amorphous (60-40 and 50-50), a condition also present in the Cu-Ni-Zr ternary alloys (60-10-30 and 50-10-40).
DOI: 10.6084/m9.figshare.23802876.v1
title: <b>Whole-genome sequencing reveals adaptations of hairy-footed jerboas (</b><i><b>Dipus</b></i><b>,</b> <b>Dipodidae) to diverse desert environments</b>

description: Final filtered SNP/InDel set used for the analyses in this article.
DOI: 10.6084/m9.figshare.929651_d6
title: Animated version of Figure 4, showing apparent ventricle size changes

description: Animated version of Figure 4.
DOI: 10.17035/d.2020.0112374975
title: SHREC'20: Non-rigid Shape Correspondence of Physically-Based Deformations (data)

description: We have produced a new dataset from 3D scans of a non-rigid real-world object, captured using a high-precision 3D scanner (Artec3D Space Spider). Four extreme poses were captured of a toy rabbit, namely: 1.) twist, 2,) indent, 3.) inflate, 4.) stretch. The internal materials were also varied incrementally using three materials, namely: 1.) couscous, 2.) risotto, 3.) chickpea. These provide challenging deformations for typical shape matching methods. The dataset consists of one full scan and 11 partial scans.
DOI: 10.17632/7vksmv48sj
title: MATLAB-based program for optimization of quantum cascade laser active region parameters and calculation of output characteristics in magnetic field

description: Abstract A strong magnetic field applied along the growth direction of a quantum cascade laser (QCL) active region gives rise to a spectrum of discrete energy states, the Landau levels. By combining quantum engineering of a QCL with a static magnetic field, we can selectively inhibit/enhance non-radiative electron relaxation process between the relevant Landau levels of a triple quantum well and realize a tunable surface emitting device. An efficient numerical algorithm implementation is presented of ... Title of program: QCL Catalogue Id: AERL_v1_0 Nature of problem The nature of the problem is to provide an efficient numerical algorithm implementation for optimization of GaAs/AlGaAs QCL active region parameters and calculation of output properties in the magnetic field. Versions of this program held in the CPC repository in Mendeley Data AERL_v1_0; QCL; 10.1016/j.cpc.2013.10.025 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/hyn64gw87f
title: Eight Part Story Method or the Beehive Model: Its Evolution and Application as a Dramatherapy Intervention

description: This document details the development and application of the 8 Part Story Method (8PSM), also known as the Beehive Model, as a culturally sensitive dramatherapy intervention in Sri Lanka. Rooted in Buddhist philosophy, the 8PSM is designed to aid individuals in overcoming personal challenges and fostering self-awareness.

Key aspects covered in the document:

Evolution of the 8PSM: The paper traces the 8PSM's origins from the Six Part Story Method (6PSM), highlighting the influence of Buddhist principles on its adaptation within the Sri Lankan context.
Theoretical Framework: It outlines the core tenets of Buddhist philosophy that underpin the 8PSM, emphasizing self-reflection, understanding the causes of suffering, and the path to liberation through mindfulness.
Case Study: A central case study illustrates the 8PSM's application with a 14-year-old boy struggling with anger and social isolation following pandemic restrictions. The case demonstrates how the 8PSM helped him externalize his problems, gain self-understanding, and initiate personal transformation.
Model Description: The document provides a detailed account of the eight stages involved in the 8PSM, including:
Protagonist (Self)
Place (Environment)
Needs
Tasks (Actions)
Obstacles
Support Systems
Cost Analysis (Risks and Benefits)
Wisdom (Wisest Choice)
Methodology: It explains the two-phase functional mechanism of the 8PSM, encompassing:
Phase 1: Metaphoric story-making and drawing for over-distancing and assessment.
Phase 2: Direct intervention, self-examination, and aesthetic engagement for under-distancing and transformation.
Therapeutic Applications: The document discusses how the 8PSM has been utilized to address a range of issues, including anger, identity problems, impulsivity, low self-esteem, and relationship difficulties.
Integration with Other Therapies: It notes the 8PSM's alignment with principles from Cognitive Behavior Therapy, Gestalt Therapy, and other established therapeutic approaches.
Potential Significance for Mendeley Data:

This document offers valuable insights for researchers, practitioners, and educators in fields such as:

Dramatherapy: Showcases a culturally adapted and innovative approach to dramatherapy intervention.
Cross-cultural psychology: Emphasizes the importance of cultural sensitivity and incorporating indigenous philosophies in therapeutic practices.
Child and adolescent therapy: Provides a structured methodology for addressing emotional, behavioral, and social challenges in young individuals.
Mindfulness-based interventions: Demonstrates the integration of mindfulness principles within a therapeutic framework.
Narrative therapy: Highlights the use of storytelling and metaphor in facilitating personal transformation and healing.
DOI: 10.17632/rw7wzch267
title: Systematic literature review of relationships between non-financial reporting quality and company-level factors

description: This systematic review deals with empirical research on European Union companies that apply NFRD, starting with 2017 onwards. According to the Directive 2014/95/EU, Member States shall bring into force the laws, regulations and administrative provisions necessary to comply with this Directive, which is to be applied starting on 1 January 2017 or during the calendar year 2017. All identified records, for 2016-2023, were downloaded in Excel files, the unique field being the digital object identifier (DOI). The date of database access and download was 12 April 2023. The results comprise 618 articles which are subject to further screening. After the screening process, 602 articles were excluded from the analysis. The end result of the systematic procedure contains 16 articles, analyzed in the deposited files.
DOI: 10.6084/m9.figshare.19999991.v2
title: Multi-year emission of carbonaceous aerosols from cooking, fireworks burning, sacrificial incenses, joss paper burning, and barbecue and the key driving forces in China

description: We have shared the dataset of carbonaceous aerosols emission inventory for sources closely related to people's daily life (including cooking, fireworks burning, sacrificial incenses and joss paper burning, and barbecue) in China. The emission inventory has high spatial ( 0.00833°, ~1 km ) and temporal resolutions (1 day for special festivals, and 1 month for the rest). The time span of emission inventory is 2000–2018. The dataset is in tif and excel format, and includes organic carbon (OC, kg), element carbon (EC, kg), black carbon (BC, kg), and brown carbon absorption cross-section emissions (BrC, Mm<sup>2</sup>). The tif data includes yearly carbonaceous aerosols emission spatial distribution. The excel data includes monthly emissions, and daily emissions for special festivals (Chinese New Year’s Eve (CNE), Chinese Spring Festival (CSF), Spring Lantern Festival (LF), Qingming Festival (QF), and Zhongyuan Festival (ZF)).
DOI: 10.6084/m9.figshare.28169324.v1
title: 1km urban density class based on Jackson et al. (2010)

description: This data was created by combining tall_bldg_dist_1km.nc, high_dens_1km.nc, med_dens_1km.nc, low_density_1km.nc from Jackson et al. (2010). Label 0, 1, 2, 3 represents TBD, HD, MD, LD, respectively.
DOI: 10.17632/2z9bfj5sk6
title: Tadpole-shaped nanoparticles in impact melt and implication for the origin of nano-metals in lunar soil

description: BSE and TEM data for nanoparticles found within impact glasses.
DOI: 10.17632/6x87nx8jtc
title: TESLA neoepitope dataset from Wells et al., 2020

description: TESLA neoepitope dataset from Wells et al., employed as an independent evaluation dataset.
DOI: 10.17632/v7n227yrfd
title: coral reef seawater and sediment microbiome

description: This dataset contains the basic R scripts and data for analysis of coral reef seawater and sediment microbiome.
DOI: 10.6084/m9.figshare.12121665.v1
title: Trained graph network models using megnet

description: Trained megnet models
DOI: 10.6084/m9.figshare.14384861.v1
title: blood-tests

description: Blood test results. B12 was already supplemented, but not others.
DOI: 10.6084/m9.figshare.18133379.v1
title: Evaluating online learning engagement

description: Dataset for original article on medical education.
DOI: 10.6084/m9.figshare.27044335.v1
title: Antismash BGCs

description: FASTA file of Biosynthetic Gene Clusters (BGCs) predicted with antiSMASH
DOI: 10.6084/m9.figshare.28557149.v2
title: Data for Latent Layering in the Upper Arctic

description: Echosounder echo levels (EL) data collected by a BioSonics DTX echosounder using a 120 kHz single beam transducer
DOI: 10.6084/m9.figshare.9755486.v1
title: perovskites

description: <pre>Matbench v0.1 test dataset for predicting formation energy from crystal structure. Adapted from an original dataset generated by Castelli et al.</pre>
DOI: 10.17632/42jvfsgwb8
title: Supplemental Table 1. Relaxer products that contain commonly patch tested allergens

description: Table that outlines which common core allergens were found in the relaxer products.
DOI: 10.17632/jrbm9r2gf7
title: Data and code for: Global Value Chains in a World of Uncertainty and Automation

description: This replication package includes all data and code to replicate results in 

Faber, Marius, Kemal Kilic, Gleb Kozliakov, Dalia Marin. "Global Value Chains in a World of Uncertainty and Automation". Journal of International Economics.

Disclaimer: The views, opinions, findings, and conclusions or recommendations expressed in this paper are strictly those of the authors. They do not necessarily reflect the views of the Swiss National Bank (SNB). The SNB takes no responsibility for any errors or omissions in, or for the correctness of, the information contained in the paper.
DOI: 10.17632/ppfpg3yn25
title: Revisiting the South China Sea MORBs: Mg isotope and whole-rock geochemical constraints

description: All the data for《Revisiting the South China Sea MORBs: Mg isotope and whole-rock geochemical constraints》
DOI: 10.17632/w77b87fvct
title: A maize leaf image dataset with three water treatment levels

description: A novel maize leaf data set is constructed, which contains 18040 images under three water treatments (well-watered, reduced-watered and drought-stressed). These local leaf images are cropped from 656 original maize digital images under natural environment. On the one hand, maize water stress status can be detected through exploring leaf phenotypic traits, like color changes, curling and wilting. On the other hand, a mass of image data is augmented that helps a lot to train a CNN.
DOI: 10.6084/m9.figshare.11347901.v1
title: alignment.zip

description: Here are the nucleotide alignments for 1594, 756 and 296 orthologous genes.
DOI: 10.6084/m9.figshare.11369007.v1
title: A primary care learning collaborative to improve office systems and clinical management of pediatric asthma

description: Pediatric asthma is a common, relapsing-remitting, chronic inflammatory airway disease that when uncontrolled often leads to substantial patient and health care system burden. Improving management of asthma in primary care can help patients stay well controlled. The Vermont Child Health Improvement Program (VCHIP) developed a quality improvement (QI) learning collaborative with a primary objective to improve clinical asthma management measures through improvement in primary care office systems to support asthma care. Seven months of medical record review data were evaluated for improvements on eight clinical asthma management measures. Pre and post office systems inventory (OSI) self-assessments detailing adherence to improvement strategies were analyzed for improvement. Logistic regressions were used to test for associations between OSI strategy post scores and the corresponding clinical asthma management measures by month seven. This study found significant improvement from baseline to month seven on seven of the eight clinical asthma management measures and between pre and post OSI for seven of the nine strategies assessed (<i>N</i> = 19 practices). Additionally, one point higher average OSI scores on the assessment and monitoring of asthma severity, asthma control, asthma action plans, and asthma education strategies were associated with significantly greater odds of improvement in their respective clinical asthma management measures. A QI learning collaborative approach in primary care can improve office systems and corresponding clinical management measures for pediatric patients with asthma. This suggests that linking specific office systems strategies to clinical measures may be a helpful tactic within the learning collaborative model.
DOI: 10.6084/m9.figshare.15060780.v6
title: Quantifying Uncertainties in CERES/MODIS Downwelling Radiation Fluxes in the Global Tropical Oceans

description: Here we provide QL and QS data from CMv3 and CMv4 (satellite data) and observations from GTMBA in the global tropical oceans used in the present study. The data formats are NetCDF and Excel. Except for figure 19 and supplementary figure 6, units of data are W/sq.m. Units of data for figure 19 and supplementary figure 6 are degree C and mts, respectively.
DOI: 10.6084/m9.figshare.23867634.v2
title: <b>Imaging-assisted Fiber optic “All-in-one” theranostics sensor</b>

description: We develop an “all-in-one” fiber-optic theranostics probe (AFOT) with the combination of nitroreductase (NTR) fluorescent molecules and graphene/gold nanostar (Gr/AuNS) nanomaterials to enable the integrated strategy for tumor sensing and treatment. The sensor can not only detect the hypoxic signal in the tumor within ten seconds with high sensitivity, but also realize the identification of the tumor margin mediated by the high spatio-temperal manipulation. Using the same fiber sensor, the xenograft tumors of mice can be treated through the self-photothermal therapy (PTT) soon after detection, resulting in a high cure rate of 83.33% without the risk of recurrence. More importantly, the AFOT is highly adaptable to the conventional medical imaging techniques, such as laparoscope, magnetic resonance, and ultrasound imaging, which facilitates the imaging-assisted navigation.
DOI: 10.6084/m9.figshare.5202733.v1
title: Dataset of wing measures of Scaptodrosophila lativittata (Diptera: Drosophilidae)

description: Measurements of the wing venation of 20 specimens (10 males and 10 females) of <i>Scaptodrosophila lativittata</i> (Malloch, 1923:618, type locality Sydney, family Drosophilidae) are presented with the objective to discover the extent and sources of error and variation in the measurement of wing venation within a species. The specimens were all collected on the BushBlitz Expedition to Oxley Wild Rivers NP, -30.8° 151.1°, NSW, Australia, coll. John Tann, 5–10 November 2015, from banana bait (Australian Museum, Sydney). One wing was removed from each specimen, flat-mounted on a slide under a cover slip, photographed at high resolution and measured digitally in one of two ways: <i>(a)</i> by <i>direct </i>measurement between two measure-points or landmarks, and <i>(b)</i> by <i>trigonometry </i>after logging all distance measures and angles from a fixed point—a time-saving method described by McEvey (2017). Four datasets are presented here: Table 1 lists the distances (µm) between defined measure-points, the process used in Table 1 is replicated in Table 2. In Table 3, the <i>trigonometry</i> method is used on the same 20 wings. In Table 4 the same wing is measured 25 times, 12 times by McE and 13 times by KD; human bias and error in technique becomes apparent. Table 5 is a key to abbreviations and should be used in conjunction with McEvey’s (2017) diagrams of measure-points.
DOI: 10.6084/m9.figshare.6273296.v1
title: Porosity Characterization of Iron Ore Pellets by X-Ray Microtomography

description: This work proposes a three-dimensional methodology to characterize porosity in iron ore pellets by X-ray Microtomography (microCT). An image analysis routine was developed to discriminate and quantify open/closed porosity. The results were compared to the traditional techniques of mercury intrusion porosimetry (MIP) and optical microscopy (OM). As expected, the porosity values obtained from microCT were much lower than those from MIP and OM, due to the lower spatial resolution of the proposed technique. However, the resolution can be optimized to detect the main peak of the pore size distribution, close to 10 µm. MicroCT was also able to discriminate between open and closed porosities, and revealed the volumetric spatial distribution of the pores, parameters that cannot be obtained from the other techniques. Thus, microCT may become a new standard for this analysis, eliminating the need for specimen preparation (as for OM) or the use of toxic materials (as in MIP).
DOI: 10.17632/wddmcbnwmz
title: gTybalt—a free computer algebra system

description: Abstract This article documents the free computer algebra system "gTybalt". The program is build on top of other packages, among others GiNaC, TeXmacs and Root. It offers the possibility of interactive symbolic calculations within the C++ programming language. Mathematical formulae are visualized using T_E X fonts. Title of program: gTybalt1.0.0 Catalogue Id: ADSI_v1_0 Nature of problem Symbolic calculations occur nowadays in all areas of science. gTybalt is a free computer algebra system based on the C++ language. Versions of this program held in the CPC repository in Mendeley Data ADSI_v1_0; gTybalt1.0.0; 10.1016/S0010-4655(03)00468-5 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.156395.v56
title: 2nd year Drosophila Developmental Genetics practical

description: This is the teaching material for the <em>Drosophila</em> module of the Developmental Genetics RSM (research skills module) held at the Faculty of Biology, Medicine and Health of The University of Manchester each year. This practical course runs over 6 days and is organised and supervised by Andreas Prokop. This module has been taught and optimised over a few years. Emphasis is on: <em>1) Drosophila</em> as a model system in research 2) the use of fly genetics (transgenic approaches and mutations) in combination with histological techniques to study mechanisms of development 3) transferable skills including how to design figures and their legends, how to compose laboratory protocols and how to file data securely This module also shows how practical work can be intercalated with exercises on applied fly genetics training, thus filling gaps in experimental protocols with useful activities, enriching the learning outcome and enhancing the fundamental understanding of <em>Drosophila</em> as a model organism. To make this genetics training accredited even on large courses, a novel hybrid e-assessment strategy has been developed, and we regularly apply it on our courses (50-65 students). This e-assessment and its principal strategies have been published in the G3 journal and a test exam is available online (3rd link below). Please, submit any comments in the comment box below or contact me directly: Andreas.Prokop@manchester. ac.uk Note, that a Powerpoint presentation "Roote+Prokop-SupplMat-3.ppt" is required on this module. It can be accessed from the second link below. It is also directly linked out from the two manuals in this resource.
DOI: 10.6084/m9.figshare.16945483.v1
title: Global positive effects of climate change on terrestrial soil methane emissions

description: We provide the <i>in</i> <i>situ</i> soil CH<sub>4</sub> flux data obtained from peer-reviewed papers from the past three decades, which related to filed-based manipulation of climate changes across major terrestrial ecosystems worldwide. These datasets were grouped into three separate files according to different types of climate manipulation: (i) increased temperature (Datasets S1), (ii) increased precipitation (Datasets S2), (iii) decreased precipitation (Datasets S3). The geographical scope of those research was between −37°25′ N and 69°45′ N latitude, with MAT between −11.5 °C and 26.4 °C and MAP between 158 mm and 2,539 mm. The reported sites covered 17 countries or regions in Asia, Europe, Oceania, South America, and North America.
DOI: 10.6084/m9.figshare.21800153.v1
title: A subset of Glopnet dataset

description: This is a subset of Glopnet dataset, providing data on the cordinations of field sites, the two fundemental traits in leaf economic spectrum (leaf mass per area and leaf longevity), and the names of sample species