cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5948014.v1
title: Moving a mountain: Practical insights into mastering a major curriculum reform at a large European medical university

description: <b>Aim:</b> Undergraduate medical education is currently in a fundamental transition towards competency-based programs around the globe. A major curriculum reform implies a dual challenge: the change of the curriculum and the delivering organization. Both are closely interwoven. In this article, we provide practical insights into our approach of managing such a fundamental reform of the large undergraduate medical program at the Charité – Universitätsmedizin Berlin. <b>Methods:</b> Members of the project management team summarized the key features of the process with reference to the literature. <b>Results:</b> Starting point was a traditional, discipline-based curriculum that was reformed into a fully integrated, competency-based program. This change process went through three phases: initiation, curriculum development and implementation, and sustainability. We describe from a change management perspective, their main characteristics, and the approaches that were employed to manage them successfully. <b>Conclusions:</b> Our report is intended to provide practical insights and guidance for those institutions which are yet considering or have already started to undergo a major reform of their undergraduate programs towards competency medical education.
DOI: 10.6084/m9.figshare.5948002
title: Light Search and Rescue Israel 2018

description: Data from high school students in Israel participating in Light Search and Rescue Trainings in the years 2017-2018; dataset includes pre and post measurments for resilience, self efficacy and knowledge; dataset also include demographic variables.
DOI: 10.6084/m9.figshare.5948002.v1
title: Light Search and Rescue Israel 2018

description: Data from high school students in Israel participating in Light Search and Rescue Trainings in the years 2017-2018; dataset includes pre and post measurments for resilience, self efficacy and knowledge; dataset also include demographic variables.
DOI: 10.6084/m9.figshare.5947993
title: Early fecal microbiota composition in children who later develop celiac disease and associated autoimmunity

description: <b>Objectives:</b> Several studies have reported that the intestinal microbiota composition of celiac disease (CD) patients differs from healthy individuals. The possible role of gut microbiota in the pathogenesis of the disease is, however, not known. Here, we aimed to assess the possible differences in early fecal microbiota composition between children that later developed CD and healthy controls matched for age, sex and HLA risk genotype. <b>Materials and methods:</b> We used 16S rRNA gene sequencing to examine the fecal microbiota of 27 children with high genetic risk of developing CD. Nine of these children developed the disease by the age of 4 years. Stool samples were collected at the age of 9 and 12 months, before any of the children had developed CD. The fecal microbiota composition of children who later developed the disease was compared with the microbiota of the children who did not have CD or associated autoantibodies at the age of 4 years. Delivery mode, early nutrition, and use of antibiotics were taken into account in the analyses. <b>Results:</b> No statistically significant differences in the fecal microbiota composition were found between children who later developed CD (<i>n</i> = 9) and the control children without disease or associated autoantibodies (<i>n</i> = 18). <b>Conclusions:</b> Based on our results, the fecal microbiota composition at the age of 9 and 12 months is not associated with the development of CD. Our results, however, do not exclude the possibility of duodenal microbiota changes or a later microbiota-related trigger for the disease.
DOI: 10.6084/m9.figshare.5947993.v1
title: Early fecal microbiota composition in children who later develop celiac disease and associated autoimmunity

description: <b>Objectives:</b> Several studies have reported that the intestinal microbiota composition of celiac disease (CD) patients differs from healthy individuals. The possible role of gut microbiota in the pathogenesis of the disease is, however, not known. Here, we aimed to assess the possible differences in early fecal microbiota composition between children that later developed CD and healthy controls matched for age, sex and HLA risk genotype. <b>Materials and methods:</b> We used 16S rRNA gene sequencing to examine the fecal microbiota of 27 children with high genetic risk of developing CD. Nine of these children developed the disease by the age of 4 years. Stool samples were collected at the age of 9 and 12 months, before any of the children had developed CD. The fecal microbiota composition of children who later developed the disease was compared with the microbiota of the children who did not have CD or associated autoantibodies at the age of 4 years. Delivery mode, early nutrition, and use of antibiotics were taken into account in the analyses. <b>Results:</b> No statistically significant differences in the fecal microbiota composition were found between children who later developed CD (<i>n</i> = 9) and the control children without disease or associated autoantibodies (<i>n</i> = 18). <b>Conclusions:</b> Based on our results, the fecal microbiota composition at the age of 9 and 12 months is not associated with the development of CD. Our results, however, do not exclude the possibility of duodenal microbiota changes or a later microbiota-related trigger for the disease.
DOI: 10.6084/m9.figshare.5947909
title: Dataset for: SINGLE UNIT ACTIVITY OF PERIAQUEDUCTAL GRAY AND DEEP MESENCEPHALIC NUCLEUS NEURONS INVOLVED IN SLEEP STAGE SWITCHING IN THE MOUSE

description: A total of 668 single units were recorded in the mouse periaqueductal gray (PAG) and adjacent deep mesencephalic nucleus (DpMe) in order to determine their role in the switching of sleep-wake states, i.e. wakefulness (W), slow-wave sleep (SWS), and paradoxical (or rapid eye movement) sleep (PS) in general, and, in particular, to determine whether PS-on and PS-off neurons involved in PS state switching are present in these structures and to identify neuronal substrates for the SWS-PS switching mediated by DpMe neurons. Both structures were found to contain similar percentages of W/PS-active neurons, which discharge at a higher rate during W and PS than during SWS, while W-active neurons, which discharge maximally during W, were found mainly in the PAG. Both also contained similar percentages of SWS/PS-active neurons, which discharge at higher rates during SWS and PS than during W, and PS-active neurons, which discharge maximally during PS, while SWS-active neurons, which discharge maximally during SWS were found almost exclusively in the PAG. Both structures contained virtually no PS-on or PS-off neurons, which, respectively, discharge or cease firing selectively and tonically just prior to, and during, PS. Unlike the PAG, the DpMe contained many SWS/PS-on neurons, which discharge selectively at high rates during SWS and PS, but show a decrease in discharge rate at the transition from SWS to PS. Analysis of discharge profiles and trends in spike activity at the state transitions strongly suggests that PAG and DpMe neurons play an important role in the W-SWS, SWS-PS, and/or PS-W switches.
DOI: 10.6084/m9.figshare.5947909.v1
title: Dataset for: SINGLE UNIT ACTIVITY OF PERIAQUEDUCTAL GRAY AND DEEP MESENCEPHALIC NUCLEUS NEURONS INVOLVED IN SLEEP STAGE SWITCHING IN THE MOUSE

description: A total of 668 single units were recorded in the mouse periaqueductal gray (PAG) and adjacent deep mesencephalic nucleus (DpMe) in order to determine their role in the switching of sleep-wake states, i.e. wakefulness (W), slow-wave sleep (SWS), and paradoxical (or rapid eye movement) sleep (PS) in general, and, in particular, to determine whether PS-on and PS-off neurons involved in PS state switching are present in these structures and to identify neuronal substrates for the SWS-PS switching mediated by DpMe neurons. Both structures were found to contain similar percentages of W/PS-active neurons, which discharge at a higher rate during W and PS than during SWS, while W-active neurons, which discharge maximally during W, were found mainly in the PAG. Both also contained similar percentages of SWS/PS-active neurons, which discharge at higher rates during SWS and PS than during W, and PS-active neurons, which discharge maximally during PS, while SWS-active neurons, which discharge maximally during SWS were found almost exclusively in the PAG. Both structures contained virtually no PS-on or PS-off neurons, which, respectively, discharge or cease firing selectively and tonically just prior to, and during, PS. Unlike the PAG, the DpMe contained many SWS/PS-on neurons, which discharge selectively at high rates during SWS and PS, but show a decrease in discharge rate at the transition from SWS to PS. Analysis of discharge profiles and trends in spike activity at the state transitions strongly suggests that PAG and DpMe neurons play an important role in the W-SWS, SWS-PS, and/or PS-W switches.
DOI: 10.15131/shef.data.5947858
title: Mdx soy diet study wire hanging data

description: raw wire hanging data for soy diet study feeding mdx mice soy products from 12 weeks of age for 12 weeks and testing muscle performance. <br>
DOI: 10.15131/shef.data.5947858.v1
title: Mdx soy diet study wire hanging data

description: raw wire hanging data for soy diet study feeding mdx mice soy products from 12 weeks of age for 12 weeks and testing muscle performance. <br>
DOI: 10.6084/m9.figshare.5947855
title: Map plotting co-ordinates of repository outputs for Brunel University(2014-2017)

description: Visualisation of dataset. This set shows Geolocation data when made available by participating services to the CORE service.<br>This shows OA publications that are affiliated with Brunel university in host locations around the world.
DOI: 10.6084/m9.figshare.5947855.v4
title: Map plotting co-ordinates of repository outputs for Brunel University(2014-2017)

description: Visualisation of dataset. This set shows Geolocation data when made available by participating services to the CORE service.<br>This shows OA publications that are affiliated with Brunel university in host locations around the world.
DOI: 10.6084/m9.figshare.5947795
title: Secukinumab Versus Adalimumab for Psoriatic Arthritis: Comparative Effectiveness up to 48 Weeks Using a Matching-Adjusted Indirect Comparison

description: <b>Article full text</b> <br> The full text of this article can be found here<b>.</b> https://link.springer.com/article/10.1007/s40744-018-0106-6 <br> <b>Provide enhanced content for this article</b> <br> If you are an author of this publication and would like to provide additional enhanced content for your article then please contact <b>adisrapidplus@springer.com</b>. <br> The journal offers a range of additional features designed to increase visibility and readership. All features will be thoroughly peer reviewed to ensure the content is of the highest scientific standard and all features are marked as ‘peer reviewed’ to ensure readers are aware that the content has been reviewed to the same level as the articles they are being presented alongside. Moreover, all sponsorship and disclosure information is included to provide complete transparency and adherence to good publication practices. This ensures that however the content is reached the reader has a full understanding of its origin. No fees are charged for hosting additional open access content. <br> Other enhanced features include, but are not limited to: <br> • Slide decks • Videos and animations • Audio abstracts • Audio slides<br>
DOI: 10.6084/m9.figshare.5947756
title: Data of paper "Threshold Effects for the Decrepitation and Stretching of Fluid Inclusions" by M. Campione

description: Opj project of Figure 2 of "Threshold Effects for the Decrepitation and Stretching of Fluid Inclusions" by M. Campione
DOI: 10.6084/m9.figshare.5947756.v1
title: Brittle_DiffStress.opj

description: Opj project of Figure 2 of "Threshold Effects for the Decrepitation and Stretching of Fluid Inclusions" by M. Campione
DOI: 10.6084/m9.figshare.5947723
title: Data of paper "Threshold Effects for the Decrepitation and Stretching of Fluid Inclusions" by M. Campione

description: Opj file of graphs included in "threshold effects for the decrepitation and stretching of fluid inclusions"<br>
DOI: 10.6084/m9.figshare.5947723.v1
title: Elasto_plastic.opj

description: Opj file of graphs included in "threshold effects for the decrepitation and stretching of fluid inclusions"<br>
DOI: 10.6084/m9.figshare.12894641.v1
title: Table S.4. The optimal film widths and film consumption for pl=4 to 16 global film layers wrapped by combined 3D method

description: Table S.4. The optimal film widths and film consumption for different compositions bottom and upper film layers resulting in 4 to 16 global layers wrapped by combined 3D method; integer programming approach.
DOI: 10.6084/m9.figshare.12894641
title: Table S.4. The optimal film widths and film consumption for pl=4 to 16 global film layers wrapped by combined 3D method

description: Table S.4. The optimal film widths and film consumption for different compositions bottom and upper film layers resulting in 4 to 16 global layers wrapped by combined 3D method; integer programming approach.
DOI: 10.6084/m9.figshare.5947534
title: Nutrient enrichment and variation in community structure on rocky shores: The potential of molluscan assemblages for biomonitoring

description: Consideration of the impacts of pollutants on elements of biodiversity and the development of cost-effective biomonitoring tools to measure those impacts are essential to coastal biodiversity conservation. To examine the effects of nutrient enrichment and to develop biomonitoring tools, a network of 11 rocky intertidal sites differing in nutrient contamination levels was established on the west coast of Ireland. Communities of molluscs on the lower shore were sampled at the sites and a range of physicochemical variables was measured to characterize levels of contamination on the shores. Total abundance and number of taxa of molluscs were reduced in contaminated sites compared to control sites. Multivariate analyses showed that the structure of the molluscan assemblages differed between contaminated and control sites, discriminating between species that were more abundant at contaminated sites and those that were more abundant at control sites. Multivariate multiple regression analysis showed that nitrite, phosphate and ammonia levels in seawater accounted for more than 45% of the variability in the community structure of molluscs. This study suggests that molluscan assemblages could be a cost-effective tool to monitor and detect changes induced by nutrient enrichment in coastal areas.
DOI: 10.6084/m9.figshare.5947447
title: Electronic Supplementary Materials Online Resource 5, Motion files

description: Motion files of medaka fish swimming saved in CSV format, and converted into BVH format.<br>When using the coordinate files, please cite our paper (1,2) and figshare doi (3).<br><br>1)<br> Nakayasu T and Watanabe E (2014) Biological motion stimuli are attractive to medaka fish. Animal Cognition 17, 559-575. https://doi.org/10.1007/s10071-013-0687-y<br><br>2) <br>Nakayasu T, Yasugi M, Shiraishi S, Uchida S, and Watanabe E (2017) Three-dimensional computer graphic animations for studying social approach behaviour in medaka fish: Effects of systematic manipulation of morphological and motion cues. PLoS ONE 12(4): e0175059. https://doi.org/10.1371/journal.pone.0175059.<br><br>3)<br>https://doi.org/10.6084/m9.figshare.5947447<br>
DOI: 10.6084/m9.figshare.5947447.v1
title: Electronic Supplementary Materials Online Resource 3, Motion files

description: Motion files of medaka fish swimming saved in CSV format, and converted into BVH format.<br>When using the coordinate files, please cite our paper (1,2) and figshare doi (3).<br><br>1)<br> Nakayasu T and Watanabe E (2014) Biological motion stimuli are attractive to medaka fish. Animal Cognition 17, 559-575. https://doi.org/10.1007/s10071-013-0687-y<br><br>2) <br>Nakayasu T, Yasugi M, Shiraishi S, Uchida S, and Watanabe E (2017) Three-dimensional computer graphic animations for studying social approach behaviour in medaka fish: Effects of systematic manipulation of morphological and motion cues. PLoS ONE 12(4): e0175059. https://doi.org/10.1371/journal.pone.0175059.<br><br>3)<br>https://doi.org/10.6084/m9.figshare.5947447<br>
DOI: 10.6084/m9.figshare.5947444
title: Collection data for Australian Museum, Sydney, family Nannastacidae specimens (Crustacea, Cumacea)

description: The Australian Museum, Sydney (AM) holds a large number of specimens of Cumacea (Crustacea). Within the family Nannastacidae 10 genera and 108 species have been identified. Cumacea specimens in the museum have been collected around Australia during the last four decades, mostly by museum staff. Among these samples, 48 were described as new species in a recent publication by the author (Petrescu, 2018, <i>Rec. Aust. Mus. </i>70(1):1–111, see link below). Collection data for all AM specimens examined in the above work are prefixed “P”, are cross-referenced to the Australian Museum database, and are published here as a dataset. Specimens held in the “Grigore Antipa” National Museum of Natural History, Bucharest, Romania, are marked MGAB CUM.
DOI: 10.6084/m9.figshare.5947015
title: Effects of accelerated and conventional corneal cross-linking (CXL) on corneal density

description: This dataset consists of a single SPSS .sav file containing corneal density data for patients with progressive Keratoconus KCN treated by collagen cross-linking (CXL). Patients are divided into two groups of 23 based on treatment type: accelerated and conventional corneal cross-linking (CXL).<br>Variables provided:<br>Patient <b>treatment group</b>, <b>gender </b>and <b>age</b>.<b>Eye: OS</b> (oculus sinister) - left eye, <b>OD</b> (oculus dextrus) - right eye<br>The following variables give corneal density in gray scale units (GSU). Where each has the prefix 'p' in the spreadsheet, this indicates a post-treatment measurement:<br><br><b>ANT:</b> anterior layer<b>CL:</b> middle layer<br><b>POST:</b> posterior layer<b>S0_2MM: </b>0-2 mm zone<b>S2_6MM:</b> 2-6 mm zone<b>S6_10MM:</b> 6-10 mm zone<b>S10_12MM: </b> 10-12 mm zone<b>TOT:</b> Total<br><b>Background of study methods:</b><br>Pentacam densitometry and corneal mapping were performed before and six months following the randomly assigned intervention. Corneal density was measured over different zones and layers of the cornea by two independent ophthalmologists. Total corneal density was calculated. The patients were followed up for the occurrence of procedure related and unrelated complication one week, one month and a final visit around 6 months (180 ± 10 days) after the procedure, during which the corneal density was remeasured and recorded.<br>
DOI: 10.6084/m9.figshare.5947015.v1
title: Effects of accelerated and conventional corneal cross-linking (CXL) on corneal density

description: This dataset consists of a single SPSS .sav file containing corneal density data for patients with progressive Keratoconus KCN treated by collagen cross-linking (CXL). Patients are divided into two groups of 23 based on treatment type: accelerated and conventional corneal cross-linking (CXL).<br>Variables provided:<br>Patient <b>treatment group</b>, <b>gender </b>and <b>age</b>.<b>Eye: OS</b> (oculus sinister) - left eye, <b>OD</b> (oculus dextrus) - right eye<br>The following variables give corneal density in gray scale units (GSU). Where each has the prefix 'p' in the spreadsheet, this indicates a post-treatment measurement:<br><br><b>ANT:</b> anterior layer<b>CL:</b> middle layer<br><b>POST:</b> posterior layer<b>S0_2MM: </b>0-2 mm zone<b>S2_6MM:</b> 2-6 mm zone<b>S6_10MM:</b> 6-10 mm zone<b>S10_12MM: </b> 10-12 mm zone<b>TOT:</b> Total<br><b>Background of study methods:</b><br>Pentacam densitometry and corneal mapping were performed before and six months following the randomly assigned intervention. Corneal density was measured over different zones and layers of the cornea by two independent ophthalmologists. Total corneal density was calculated. The patients were followed up for the occurrence of procedure related and unrelated complication one week, one month and a final visit around 6 months (180 ± 10 days) after the procedure, during which the corneal density was remeasured and recorded.<br>
DOI: 10.6084/m9.figshare.5947012
title: Dataset: Offshore Reef Fishes of South Coast NSW

description: <b>Raw Data: </b>These data are presence/absence of fifty fish species at each of 18 sites on relatively deep offshore patch reefs (~50 m depth) on the South Coast of NSW, Australia.<b>Site Details: </b>Site names, depths, sample lengths, lat/longs. <b>Read Me: </b>Before using this data set see the attached read me file. <b>Extended Table 1: </b>Species list of fish recorded on relatively deep offshore patch reefs in 2013 and depth range listed in the scientific literature (see references below) for each species (January 2018). This table is an extended version of the summary table in Fetterplace, L. C., Turnbull, J. W., Knott, N. A. and Hardy, N., A. (2018). "The devil in the deep: expanding the known habitat of a rare and protected fish", 4(1), 22-29. European Journal of Ecology. https://doi.org/10.2478/eje-2018-0003 Data was collected as part of: Fetterplace, L.C. (2017). “The ecology of temperate soft sediment fishes: Implications for fisheries management and marine protected area design". Doctor of Philosophy thesis, University of Wollongong, in collaboration with the department of primary industries New South Wales. <b>When using this data-set cite</b>: Fetterplace, L. C., Turnbull, J. W., Knott, N. A. and Hardy, N., A. (2018). "The devil in the deep: expanding the known habitat of a rare and protected fish", 4(1), 22-29. European Journal of Ecology. https://doi.org/10.2478/eje-2018-0003 <br> Fetterplace, L.C. (2017). “The ecology of temperate soft sediment fishes: Implications for fisheries management and marine protected area design". Doctor of Philosophy thesis, University of Wollongong. <b>Depth Range References:</b> Bray, D. J. (2018). "Fishes of Australia." Retrieved 01 Jan, 2018, from https://www.fishesofaustralia.net.au. Froese, R. and Pauly, D. (2017). "World Wide Web electronic publication." Retrieved 1/01/2018, from www.fishbase.org. Gomon, M. F., Bray, D. J. and Kuiter, R. H., Eds. (2008). Fishes of Australia's southern coasts, New Holland. Kuiter, R. H. (2000). Coastal Fishes of South-eastern Australia. Gary Allen pp. 437. McGrouther, M. (2018). "Fish Web Pages." Australian Museum. Retrieved Jan 01, 2018, from http://australianmuseum.net.au.<br>