cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/6ph47zxcs2
title: CEP78 gene mutation as the underlying cause of Cone-Rod Dystrophy associated with hearing loss and infertility

description: This case describes a 23-year-old male patient with no family history of retinal diseases who presented with progressive vision loss, photophobia, and reduced color perception. Over the course of eight years, his visual acuity deteriorated, with central and near vision becoming significantly impaired. Molecular testing revealed a mutation in the CEP78 gene, confirming a diagnosis of cone and rod dystrophy (CRD). Diagnostic imaging, including autofluorescence, Optical Coherence Tomography (OCT), and electroretinograms, showed characteristic retinal changes, including thinning of the nerve fiber layer and reduced photoreceptor function. Although the patient reported no auditory symptoms, auditory evoked potentials revealed bilateral abnormalities, and a semen analysis showed mild sperm motility and morphology issues, suggesting possible infertility. This case highlights the importance of CEP78 mutations in CRD, as well as their association with hearing loss and fertility issues, providing valuable insights for diagnosis and potential therapeutic approaches.
DOI: 10.17632/nygjfzxpc2
title: Prosocial Behavior Toward non-Muslims in Indonesia

description: Prosocial Behavior Toward non-Muslims in Indonesia
DOI: 10.17632/przzrd7sb9
title: Molecular tag for promoting N-glycan maturation in the cargo receptor-mediated secretion pathway. Yagi et al.

description: Imaging data used to quantify colocalization analysis in Figs 2B and 5C.
DOI: 10.6084/m9.figshare.1512427.v6
title: brain tumor dataset

description: This brain tumor dataset contains 3064 T1-weighted contrast-inhanced images with three kinds of brain tumor. Detailed information of the dataset can be found in the readme file.
DOI: 10.6084/m9.figshare.19739884.v1
title: RefSeq Datasets for benchmarking - Ho et al.

description: <strong>All complete phage genomes deposited in RefSeq between 1 January 2020 and 12 August 2021 quality controlled, dereplicated, and fragmented to create a positive set of artificial contigs. These were then also randomly shuffled to produce a further negative control.</strong> <br> <strong>All complete bacterial and archaeal chromosomes deposited in RefSeq between 1 January 2020 and 12 August 2021 quality controlled, dereplicated, subsetted, and fragmented to create a negative set of artificial contigs. </strong> <br> <strong>All complete bacterial and archaeal plasmids deposited in RefSeq between 1 January 2020 and 12 August 2021 quality controlled, dereplicated, subsetted, and fragmented to create a negative set of artificial contigs. </strong> <br> <br> <br>
DOI: 10.6084/m9.figshare.21406731.v2
title: A global dataset of soil gross nitrogen cycle

description: Source_Data_Figure_2 and 3
DOI: 10.15468/dl.z6ht2u
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Magnolia napoensis F.Arroyo, Á.J.Pérez & A.Vázquez"
 ]
}

 The dataset includes 46 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013061-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.19907110.v1
title: C. elegans Data.zip

description: C. elegans
DOI: 10.17632/ffw8f8n6ym
title: The roles and signalling pathways of lncMALAT1 in coronary artery disease: A systematic review of in vivo and in vitro studies

description: Figure 1 PRISMA flow diagram for systematic reviews.
PRISMA : Preferred Reporting Items for Systematic Review and Meta-analysis

Figure 2. Transcription and expression of MALAT1 involved in CAD animal of in vivo model. The effects of MALAT1 deficiency, overexpression, and knockdown focus on upstream and downstream signalling pathways, cardiac function, vascular changes, and potential therapeutic targets were demonstrated. Blue represents MALAT1 deficiency. Red represents overexpression of MALAT1. Green represents MALAT1 knockdown. ↑ represents upregulate. ↓ represents downregulate. 

Figure 3. Transcription and expression of MALAT1 involved in CAD in vitro model. The presentation of MALAT1 overexpression and knockdown highlighted upstream and downstream signalling pathways, cell function, vascular changes, and potential therapeutic targets were summarized. Red represents overexpression of MALAT1. Green represents MALAT1 knockdown. ↑ represents upregulate. ↓ represents downregulate.
DOI: 10.17632/jrh75fg3zx
title: ISTADFuels - Italian SpatioTemporal Augmented Dataset on Fuels

description: We present a dataset for fuel sales analysis at the Italian provincial (NUTS3) level from January 2015 to October 2023 (release V3, January 2024). Fuel sales data are collected at monthly frequency, and are organized by fuel type, usage, and point of sale (highway, municipal road, extra-network road). Fuels data are augmented by a set of socio-economic and geographical variables, which help explain the impact of economic phenomena and topography on fuel sales. The data is collected from the Monthly oil Bullettin of Italian Ministry of Environment and Energy Security (MITE), ISTAT (Istituto Nazionale di Statistica), Bank of Italy and Eurostat, and has been collected through both automated web scraping and manual downloads, then cleaned and reshaped to be suitable for analysis. The produced dataset may be useful for spatiotemporal fuel sales forecasting, air quality analysis, urban mobility, econometric research, as well as machine learning applications. To further assist the user in finding valuable insight, an R Shiny app (freely available at the webpage https://ale-ch.shinyapps.io/it-fuel-dashboard/) was developed for data exploration. App code and the data have been made fully available on the following Github repository (https://github.com/ale-ch/it-fuel-dashboard). The app consists of interactive plots that allow the user to visualize every variable in the dataset at different time ranges and locations, allowing full flexibility in data exploration.
DOI: 10.17632/zs5p47vx8k
title: Cash Transfers as a Response to COVID-19: Experimental Evidence from Kenya (Journal of Development Economics, 2022) Replication

description: These files allow interested users to replicate the results in "Cash Transfers as Response to COVID-19: Experimental Evidence from Kenya" by Wyatt Brooks, kevin Donovan, Terence R. Johnson, and Jackline Oluoch-Aridi. The paper is published in the Journal of Development Economics.
DOI: 10.6084/m9.figshare.8292194.v1
title: Liver function tests and fibrosis scores in a rural population in Africa

description: This is a dataset to support an analysis to estimate the prevalence and aetiology of liver disease in a rural population in Uganda.<br> The data were collected in 2011 from the Uganda General Population Cohort (GPC), based in Kyamulibwa, in the Kalungu district of South-Western Uganda, established in 1989 (partners: UK Medical Research Council, Uganda Virus Research Institute, London School of Hygiene and Tropical Medicine). <br>We have assessed the prevalence of liver disease based on liver function tests (LFTs) and fibrosis scores, and estimated the burden of liver disease associated with alcohol, hepatitis b virus (HBV), HIV, and high or low body mass index.<br><br>The files included here are as follows:<br>1. Complete metadata underpinning the analysis, labelled 'GPC metadata table', provided as xls and csv files.<br>2. A pdf document containing supplementary material (tables and figures), as follows:<br><b>Suppl Table 1:</b> Origin, reference ranges and clinical significance of liver function tests (LFTs) <br><b>Suppl Table 2:</b> Scores to estimate liver fibrosis, calculated from liver function tests<br><b>Suppl Table 3:</b> Description of characteristics of study participants with liver function test (LFT) results from the Ugandan General Population Cohort (N=8,099)<br><b>Suppl Table 4:</b> Median and inter-quartile range for each liver function test with the population divided by risk factors<br><b>Suppl Fig 1:</b> Distribution of liver function tests in Uganda General Population Cohort. <br><b>Suppl Fig 2:</b> Odds ratio for deranged ALT, AST, APRI, GPR and AST/ALT among participants grouped by sex and age.<br><b>Suppl Fig 3:</b> Proportion of Uganda General Population cohort reporting alcohol consumption among individuals with and without AST/ALT ratio &gt;2<br><b>Suppl Fig 4:</b> Proportion of Uganda General Population Cohort with elevated GGT, according to AST/ALT ratio. (A) males, with upper limit of normal GGT=61 (B) females, with upper limit of normal GGT=36. P-values by Fisher’s Exact Test<br><b>Suppl Fig 5: </b>Proportion of Uganda General Population Cohort with blood borne virus (BBV) infection, according to GPR score. P-value by Fisher’s Exact Test, showing significant enrichment of BBV infection among individuals with elevated GPR score &gt;0.32.<br><br>Ethics approval for this study was provided by:- the Science and Ethics committee of the UVRI (GC/127/12/11/06)- the Ugandan National Council for Science and Technology (HS870)- the East of England-Cambridge South (formerly Cambridgeshire 4) NHS Research Ethics Committee UK (11/H0303/5).All participants provided written informed consent.
DOI: 10.17632/96388j9nf6
title: Dataset for The mental health benefits of visiting canals and rivers: An ecological momentary assessment study.

description: Dataset containing the underlying data for the manuscript titled: The mental health benefits of visiting canals and rivers: An ecological momentary assessment study.
DOI: 10.6084/m9.figshare.19367933.v7
title: Visual Near-Duplicates Detection in the Context of Social Media (Dataset)

description: The dataset of the paper: ``Dataset and Case Studies for Visual Near-Duplicates Detection in the Context of Social Media'', by Hana Matatov, Mor Naaman, and Ofra Amir.<br>See the Github repository for details:https://github.com/sTechLab/Visual-Near-Duplicates-Detection-in-the-Context-of-Social-Media<br><br>See the associated paper on arXiv:https://arxiv.org/abs/2203.07167<br>
DOI: 10.17632/x5hs8k7rgf
title: Data for: Fatigue Crack Growth Retardation Techniques for the Integral Airframe Structure

description: Measured fatigue crack growth data in the 2024-T351 substrate with bonded, cold-sprayed and ultrasonically consolidated crack retarders.
DOI: 10.6084/m9.figshare.20502372.v2
title: Reproducible results for: Sex inclusion in transcriptome studies of daily rhythms

description: The zip file contains all code, data, and results. <br> For instructions on how to reproduce the analysis, see README.md.
DOI: 10.17632/6dyv7ddxtw
title: Dataset: Aditya Birla Capital Limited (ABCAPITAL.NS) Stock Performance

description: This dataset provides historical stock market performance data for specific companies. It enables users to analyze and understand the past trends and fluctuations in stock prices over time. This information can be utilized for various purposes such as investment analysis, financial research, and market trend forecasting.
DOI: 10.17632/jcvhjhnz4h
title: Datasets for "Can Digital Finance Development Improve Balanced Regional Investment Allocations in Developing Countries? --- The Evidence from China"

description: Datasets and Replicable Guide for "Can Digital Finance Development Improve Balanced Regional Investment Allocations in Developing Countries? --- The Evidence from China"
DOI: 10.17632/jtk4wk6rrv
title: Oecophylla smaragdina (Hymenoptera: Formicidae) as a potential biological control agent of the invasive Metisa plana (Lepidoptera: Psychidae)

description: GLMs and GAM statistical analyses - Predation and biological control of the invasive bagworms species Metisa plana by the Asian weaver ant. 
Successful repellent tea tree essence oil and sucrose feeding experiment.
DOI: 10.6084/m9.figshare.13014893.v1
title: Agile Coaching SLR Inclusion Exclusion

description: Scopus search results
DOI: 10.6084/m9.figshare.14511885.v1
title: Datasets supporting Haloi et al. Communications Biology

description: This file includes datasets used in Haloi et al. - Communications Biology. Title of the manuscript "Structural Basis of Complex Formation Between Mitochondrial Anion Channel VDAC1 and Hexokinase-II".<br>Fig2_PanelA_HMMM.psf, Fig2_PanelA_HMMM_frame_0, Fig2_PanelA_HMMM_frame_200ns: Initial and final, membrane-bound configurations of HKII-N in a representative HMMM MD trajectory. These files can be directly open using VMD.<br><br>Fig2_PanelA_full.psf, Fig2_PanelA_full_frame_200ns.pdb: Final, membrane-bound configurations of HKII-N in a representative full-membrane MD trajectory. These files can be directly opened using VMD.<br><br>Fig2_PanelB.xlsx: Insertion depth of H-anchor residue I2 into the membrane, calculated using the HMMM and full-membrane MD simulations. <br>Fig2_PanelC.xlsx: Insertion depth of the H-anchor residues (1-27) into the membrane, calculated using the full-membrane MD simulation.<br>Fig3_PanelA.xlsx: Tilt angle of the H-anchor, calculated using the BD and MD simulation.<br>Fig3_PanelD.xlsx: X-Y coordinates of the center of mass of H-anchor, calculated using the trajectories from all 100 independent BD replicates.<br><br>Fig3_PanelE_HKV1.psf, Fig3_PanelE_HKV1.pdb: Final configuration membrane-embedded HKII/VDAC1 complex (HKV1). These files can be directly opened using VMD.<br><br>Fig4_PanelB_HKV1.xls: Radius profile of the VDAC1 pore in HKV1.<br><br>Fig4_PanelB_VDAC1.xls: Radius profile of the VDAC1 pore in VDAC1 alone.<br><br>Fig4_PanelD.xlsx: The cumulative net number of channel-crossing events by Chloride and Sodium, tracked over the time course of a representative MD simulation for VDAC1 or the HKV1 complex.<br><br>Fig5_Electrophysilogy.xlsx: Values of our electrophysiology data points. <br><br>Fig6_PanelA.xlsx: X-Y coordinates of the center of mass (C.O.M) of H-anchor, calculated using the trajectories from all 100 independent BD replicates of WT- and S215phosphorylated-VDAC1 system.<br><br>Fig6_PanelB.xlsx: Z-coordinate (perpendicular to the membrane normal) values of VDAC1 residues, calculated using the full-membrane VDAC1-alone MD simulation.<br>
DOI: 10.6084/m9.figshare.24648042.v1
title: ILE cases.xlsx

description: Dataset for PlosOne Publication
DOI: 10.6084/m9.figshare.7243790.v1
title: Survival evaluation of bacterial indicators and viruses during thermal drying of sewage sludge in a greenhouse

description: ABSTRACT The aim of the study was to evaluate the thermic drying of sewage sludge in agricultural greenhouse, in order to inactivate bacterial and virus, and to evaluate the behavior of somatic coliphages as indicator of these organisms. Each volume of excess sewage sludge discarded from UASB reactor, drained in a drying bed for 14 days and directed to thermic drying treatment in greenhouse corresponded to a batch (B) of sludge. Between February and November 2015, nine batches (L1 to L9) were treated for an average of 13 weeks. Most batches kept the pH between 5.0-6.0. After about 60 days of treatment, all batches showed humidity below 10%, except B3 and B4 (10-25%). The time required to reach 90% of total solids ranged between 40-50 (B1 to B7), 60 (B5, B6) and 85-100 (B2, B3 and B4) days. On average, levels of E. coli reduced to &lt;1x103 NMP/g TS after 50-60 days of treatment. The detection of somatic coliphages was low and eventual. Tests of inoculation showed rapid decay of virus (Sabin 1 strain poliovirus), but somatic coliphage Phi X174 was more persistent in the three temperatures evaluated (greenhouse, laboratory controlled 30 and 60°C). The thermic drying treatment of sewage sludge in agricultural greenhouse was presented as simple and efficient in obtaining granulated and dried product, and in reducing bacterial contamination levels given the parameter set as safe for agricultural use under the Brazilian law.
DOI: 10.6084/m9.figshare.13168106.v1
title: Metadata record for: The SUSTech-SYSU dataset for automated exudate detection and diabetic retinopathy grading

description: This dataset contains key characteristics about the data described in the Data Descriptor The SUSTech-SYSU dataset for automated exudate detection and diabetic retinopathy grading. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.19336305.v1
title: Amyotrophic lateral sclerosis mortality rates in Latin America and the Caribbean: a meta-analysis

description: <i>Background</i>: Recent studies have described a low occurrence of Amyotrophic Lateral Sclerosis (ALS) in Latin America. Significant differences in ALS risk have been reported among ethnic populations in the region. We conducted a meta-analysis using population-based data to describe ALS mortality rates in Latin America. We explored sources of heterogeneity among key covariates. <i>Methods</i>: National mortality registries from Latin American countries were searched to identify ALS deaths according to the International Classification of Diseases (ICD-9: code 335.2 and ICD-10: code G12.2). Crude and standardized mortality rates were calculated. A random-effect meta-analysis was conducted to estimate pooled mortality rates. Subgroup analysis was performed as a means of investigating heterogeneity. <i>Results</i>: Overall, 28,548 ALS deaths and 819 million person-years of follow-up (PYFU) from ten Latin American countries were considered. Standardized mortality varied among countries. The highest mortality rates were observed in Uruguay and Costa Rica at 1.3 and 1.2 per 100,000 PYFU, respectively. The pooled crude mortality rate was 0.38 (95%CI: 0.28–0.53) and the pooled standardized mortality was 0.62 (95%CI: 0.49–0.77) per 100,000 PYFU. Heterogeneity was high (I2: 99.9%, Cochran’s Q <i>p</i> &lt; 0.001). Subgroup analysis showed a higher mortality rate among countries with a higher proportion of Caucasian populations and higher income levels. <i>Conclusion</i>: There is a lower ALS occurrence in Latin America compared to Europe and North America. This meta-analysis supports the hypothesis of a higher ALS risk among the Caucasian population. Further studies are needed to investigate the role of ancestral origins in ALS, taking socioeconomic status into consideration.
DOI: 10.17632/46k9s9xyzr
title: Supplemental Figures for Publication titled "Focal Point Technology: Controlling Treatment Depth and Pattern of Skin Injury by a Novel Highly Focused Laser"

description: Supplemental figures for the JAAD submitted publication titled "Focal Point Technology: Controlling Treatment Depth and Pattern of Skin Injury by a Novel Highly Focused Laser"
DOI: 10.6084/m9.figshare.22273504.v2
title: Psychosocial factors-Academic achievement-demographics. sav

description: With the objective of determining the impact that academic anxiety, self-concept, academic social skills, academic skills practice and motivation have on first-year university students' academic achievement, data were collected using adapted instruments. Anxiety measure started out as a forty-piece complete instrument, but after pilot testing, it was cut down to twenty-one. Then, one comprehensive anxiety instrument that covered all these bases was created. The other instruments have undergone similar validation procedures. The results led to the reduction of items based on their factor loading coefficients, which were.3. In this regard, academic self-concept was reduced from an 18-piece complete instrument to 13 after pilot testing, as were motivation (i.e., a mix of items from intrinsic and extrinsic motivation), academic skills practice (i.e., a mix of items from conventional learning kills and advanced study skills), and academic social skills (i.e., a mix of items from social initiation and cooperation). The internal consistency of each item was investigated using the inter-item to total correlation and Cronbach alpha approaches. On the other hand, the academic achievement results of students throughout the course of the previous two semesters were taken into consideration. The registrars and the students themselves provided data for the study. Along with receiving training on the tools used to collect data, research assistants also received information on how to approach individuals and obtain their informed consent. When they were gathering the data, they each made an effort to address questions and confusions. Every participant was completely free to choose whether to take part in the study or not. It was a thoroughly administered self-report given face-to-face and spent over the course of 20 to 30 minutes with each participant completing the response.
DOI: 10.17632/4t8b3c6zb7
title: Civic engagement in Indonesia

description: General perception about youths
DOI: 10.17632/vk23xxvg7w
title: Data for: Runge-Kutta-Gegenbauer methods for advection-diffusion problems

description: frkg2.tgz is a C implementation of FRKG numerical integration at second order. The code consists of two files: the file frkgcore.c contains the code necessary to obtain a solution to the problem prescribed in frkguser.c. The files Tables_N1-N2/arks___<b>.csv contain the coefficents for FRKG schemes at orders N=1...2 and, at each order, over a range of 18 Gegenbauer coefficient values running from 0 to 2N. The coefficients for each scheme is provided for up to Nx257 stages. The default problem is similar to the Brusselator presented by Hairer & Wanner (see (1.6) of Sect. IV.1): a stiff nonlinear diffusion-reaction problem describing chemical kinetics of a tri-molecular chemical reaction subject to periodic boundary conditions. Advection is added following Abdulle & Vilmart (2013). The problem is specified via three user defined functions: deriv() - populates f(W)=W_t; spec() - returns spectral radius; and Wexact(). User parameters are: RTOL - error tolerence; NE - number of grid points (including boundary) assuming a uniform square mesh; TEND; XMAX; XMIN. To apply the FRKG scheme to other problems it should only be necessary to supply a modified version of frkguser.c. Note that complex variables are used via complex.h internally to the time-marching function trystep(). Above trystep() no complex variables are visible. Usage: to compile executable frkg using gcc gcc -O3 frkgcore.c frkguser.c -lm -o frkg Solution is written to sol.dat Reference solution is sol.ref To plot first species via gnuplot: splot "sol.dat" every 10:10 u 1:2:3 w pm3d ----------------------------- The additional files Tables_N3-N8/arks___<b>.csv contain the coefficents for FRKG schemes at orders N=3...8 and, at each order, over a range of 18 Gegenbauer coefficient values running from 0 to 2N. The coefficients for each scheme is provided for up to Nx257 stages.</b></b>
DOI: 10.6084/m9.figshare.19672479.v1
title: Code for human activity recognition

description: The model used in this study for human activity recognition Some other baseline models <br>
DOI: 10.6084/m9.figshare.24724443.v1
title: File 1_Genome completeness.txt

description: Genome completeness
DOI: 10.6084/m9.figshare.27021124.v1
title: Dataset and R codes for "Ectomycorrhizal dominance increases temporal stability of productivity at multiple spatial scales across US forests"

description: Dataset and codes for "Ectomycorrhizal dominance increases temporal stability of productivity at multiple spatial scales across US forests"submit.csv: the original data for anlysis in "Ectomycorrhizal dominance increases temporal stability of productivity at multiple spatial scales across US forests".meta_submit.csv: Description of each variable in the file "submit.csv".submit.r: the R codes for anlysis in "Ectomycorrhizal dominance increases temporal stability of productivity at multiple spatial scales across US forests".
DOI: 10.6084/m9.figshare.27617694.v1
title: Xenacoelomorpha opsins

description: Annotation of opsin genes in all genomic data available for Xenacoelomorpha.