cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34894/9vnd3a
title: Publication Package 'Familiarity and Audience Effects on Giving: A Functional Magnetic Resonance Imaging Study': computer code

description: This is a publication package for the article 'Familiarity and Audience Effects on Giving: A Functional Magnetic Resonance Imaging Study', which can be found here: &lt;br&gt;&lt;a href="https://www-mitpressjournals-org.eur.idm.oclc.org/doi/abs/10.1162/jocn_a_01568"&gt;https://www-mitpressjournals-org.eur.idm.oclc.org/doi/abs/10.1162/jocn_a_01568&lt;/a&gt;&lt;br&gt;&lt;div&gt;&lt;br&gt;&lt;/div&gt;&lt;div&gt;This publication package contains: the computer code&lt;br&gt;&lt;br&gt;&lt;/div&gt;

&lt;div&gt;
&lt;p style="color: purple;"&gt;
Files are accessible to the authors of the study. Interested parties can request access by e-mailing s.vandegroep@essb.eur.nl or crone@essb.eur.nl. When requesting data, please explain why you would like to access the files.&lt;br&gt;
&lt;/p&gt;
&lt;/div&gt;
description: If you use this dataset, please cite: van de Groep, Suzanne; Crone, Eveline A.; Zanolie, Kiki (2020). Publication Package 'Familiarity and Audience Effects on Giving: A Functional Magnetic Resonance Imaging Study': computer code. Erasmus University Rotterdam (EUR). Dataset. https://doi.org/10.25397/eur.12998942
DOI: 10.15468/dl.wkd9ra
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachemys scripta",
 "Country is Barbados",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032624-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2sb34f
title: Occurrence Download

description: A dataset containing 11994 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachemys scripta",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11994 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032625-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2zrde3
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-80.55997 12.95204,-78.70444 -4.43138,-67.08294 -4.82202,-65.03209 13.09853,-80.55997 13.09853,-80.55997 12.95204))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bazzania tricrenata"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032627-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5sm9ap
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trachelyichthys decaradiatus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 21 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032628-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16928752
title: PCNE v2.0.0 benchmark

description: This repository contains all the FASTA and FASTQ files used to benchmark PCNE v2.0.0. 

The reference sequences used to generate simulated reads are available on NCBI (CP003200 and CP003223).
DOI: 10.6084/m9.figshare.29968183
title: Data_Source.xlsx

description: <b>Beyond Uniform Incentives:</b><b>An LCA-SCC-Based Framework for Optimal EV Subsidies in the U.S.</b>
DOI: 10.6084/m9.figshare.29968183.v1
title: Data_Source.xlsx

description: <b>Beyond Uniform Incentives:</b><b>An LCA-SCC-Based Framework for Optimal EV Subsidies in the U.S.</b>
DOI: 10.15468/dl.t8stxc
title: Occurrence Download

description: A dataset containing 339 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachemys scripta",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 339 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032630-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.28qsx5
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachemys scripta",
 "Country is Bolivia (Plurinational State of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032629-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gcwqrr
title: Occurrence Download

description: A dataset containing 2813571 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sagra femorata, Euscepes postfasciatus, Epilachna varivestis, Calandra obscura, Trypoxylus dichotomus, Dorcus tityus, Prosopocoilus inclinatus, Nealsomyia rufella, Unaspis yanonensis, Agriosphodrus dohrni, Amphibolus venator, Xylocopa tranquebarorum, Delta pyriforme, Ropalidia marginata, Parasa lepida, Hestina assimilis, Sericinus montela, Thrips palmi, Crangonyx floridanus, Carcinus aestuarii, Amphibalanus eburneus, Oryzias latipes, Misgurnus mizolepis, Acheilognathus cyanostigma, Acheilognathus macropterus, Acheilognathus rhombeus, Acheilognathus typus, Biwia zezera, Opsariichthys uncirostris, Rhodeus ocellatus, Channa asiatica, Rhinogobius kurodai, Lateolabrax japonicus, Oncorhynchus nerka, Silurus asotus, Bufo gargarizans, Fejervarya kawamurai, Fejervarya sakishimensis, Microhyla okinavensis, Pelophylax nigromaculatus, Polypedates leucomystax, Andrias davidianus, Himantopus mexicanus, Colinus virginianus, Lonchura striata, Pica pica pica, Garrulax canorus, Garrulax perspicillatus, Garrulax sannio, Euplectes orix)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 2813571 records from 351 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032588-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5sf2mq93
title: MassIVE MSV000098913 - Semi-pure petrobactin analyzed for metal-binding (mzML files for personal use)
title: This is a repeat of the previous job of the same name but just containing mzML files for personal use in the GNPS2 dashboard.
DOI: 10.5066/p14tep7t
title: Laboratory-based optical measurements for water samples collected from Clear Lake, California

description: Clear Lake, located within the Coast Range west of California's Central Valley, is the largest natural freshwater lake contained fully within the state. The lake has three arms: a large open-water region to the northwest (Upper Arm), a smaller and narrower region to the southeast (Lower Arm), and the smallest and narrowest region to the east (Oaks Arm). Water quality in Clear Lake is degraded by both by mercury contamination and harmful algal blooms (HABs). The mercury contamination is largely associated with the Sulfur Bank Mercury Mine (SBMM), a Superfund site managed by the U.S. Environmental Protection Agency (USEPA) since 1992 located on the eastern end of the Oaks Arm. Mercury contamination from SBMM and its biogeochemical mercury cycling within the lake are the focus of research being conducted by the U.S. Geological Survey (USGS) in cooperation with USEPA. Monitoring and modeling efforts are being implemented to improve understanding of the ways that nutrient dynamics affect the cycling, transport, and bioaccumulation of Hg. This data release documents measurements related to organic matter concentrations and characteristics in Clear Lake, California. Data files reported here provide full spectral results for absorbance (Clear_Lake_Full_Spectra_Absorbance_Data.csv) and fluorescence (Clear_Lake_Vectorized_Fluorescence_Data.csv) analyses as well as calculated fluorescence indices and arrays (Clear_Lake_Sample_Summary.csv) used for statistical modeling for proxy development. Commonly reported diagnostic absorbance wavelengths and fluorescence excitation-emission pairs contained in these spectra as well as a set of commonly calculated indices have been released to the USGS National Water Information System (NWIS) database. The optical measurements reported here were collected to establish additional potential surrogates for mercury (Hg) and methylmercury (MeHg) concentrations and to provide more complete spectral information on temporal and spatial patterns of organic matter within the lake. Other water-quality data for the samples included in this data release are published in Marvin-DiPasquale and others (2020) and Agee and others (2024).
DOI: 10.15468/dl.xzhk8c
title: Occurrence Download

description: A dataset containing 3717 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachemys scripta",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3717 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032632-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26036/cnp0006829
title: single-cell RNA-seq of Asian water buffalo

description: Characterizing the cell type-specific transcriptome is crucial for understanding the cellular and molecular regulatory mechanisms underlying adaptive evolution and complex phenotypes. Here, we used single-cell/nucleus RNA sequencing to construct a cell transcriptomic atlas of 397,011 cells, representing 56 cell types, from 12 tissues in river and swamp buffalo, which exhibit significant divergence in milk production. Differential expression analyses identified metabolic and neuronal tissues (i.e., mammary gland, liver, and pituitary) and cell types (e.g., luminal cells, cholangiocytes, somatotropes, and lactotropes) that mediate the divergence of milk production. Lactotrope-specific downregulation of TRHDE in the thyroid hormone signaling pathway promoted milk production. Enrichment analyses revealed key cell types (e.g., luminal cells and cholangiocytes) and genes (e.g., RPL13 and LALBA) associated with milk production. Ultimately, our buffalo cell atlas (http://bovomicshub.com) will serve as a valuable resource for buffalo genetics and genomics research and provide further insights into the regulation of milk synthesis and secretion.
DOI: 10.15468/dl.ggtw4j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hucho ishikawae)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032634-250811113504898/datasets/export for details.
DOI: 10.15468/dl.w7rcvx
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachemys scripta",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 60 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032633-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zkakkz
title: Occurrence Download

description: A dataset containing 330 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachemys scripta",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 330 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032635-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/kfq27-mjg39
title: NR1769pR388conjNR1769

description: skinny Ecoli with pR388 F plasmid conjugation with NR1769 for 30 min in a drop, Au grids
description: <strong>Tilt Series Date:</strong> 2014-10-26</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> NR1769 pR388</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Christian Baron</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-26-1/rawdata/</p>NR1769pR388_NR17690001.mrc,  Tilt Series (Pixel Size 0.63 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-26-1/rawdata/NR1769pR388_NR17690001.mrc"
        > <i class="download icon"></i> Download </a></p>

        NR1769pR388_NR17690001_full.rec,  Reconstruction (Pixel Size 0.0 nm), 980.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-26-1/3dimage_49695/NR1769pR388_NR17690001_full.rec"
        > <i class="download icon"></i> Download </a></p>

        slicer000.tif,  2.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-26-1/file_12490/slicer000.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer001.tif,  2.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-26-1/file_12491/slicer001.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer002.tif,  2.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-26-1/file_12492/slicer002.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer003.tif,  2.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-26-1/file_12493/slicer003.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer004.tif,  2.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-26-1/file_12494/slicer004.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/08124-hwq92
title: NR1769pKM101conjNR1769drop

description: Skinny E. coli NR1769 with Fplasmid conjugating to NR1769 on a drop for 30min Au grids
description: <strong>Tilt Series Date:</strong> 2014-10-27</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> NR1769 pKM101</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Christian Baron</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-27-11/rawdata/</p>NR1769pKM101plusNR1769drop10008.mrc,  Tilt Series (Pixel Size 0.63 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-27-11/rawdata/NR1769pKM101plusNR1769drop10008.mrc"
        > <i class="download icon"></i> Download </a></p>

        NR1769pKM101plusNR1769drop10008_full.rec,  Reconstruction (Pixel Size 0.0 nm), 980.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-27-11/3dimage_49703/NR1769pKM101plusNR1769drop10008_full.rec"
        > <i class="download icon"></i> Download </a></p>

        slicer000.tif,  2.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-27-11/file_12553/slicer000.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer001.tif,  2.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-27-11/file_12554/slicer001.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer002.tif,  2.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-27-11/file_12555/slicer002.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer003.tif,  2.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-27-11/file_12556/slicer003.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer004.tif,  2.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-27-11/file_12557/slicer004.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.3tszrn
title: Occurrence Download

description: A dataset containing 14533 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Juniperus thurifera"
 ]
}

 The dataset includes 14533 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032637-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/7xwbh-xrc38
title: intact HIV VLP -- R9 vector

description: Raw data files of intact HIV VLP -- R9 vector
description: <strong>Tilt Series Date:</strong> 2009-04-28</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> mature HIV-1</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: 9.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2009-04-28-1/rawdata/</p>09apr28a_viron01.mrc,  Tilt Series (Pixel Size 0.52 nm), 587.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2009-04-28-1/rawdata/09apr28a_viron01.mrc"
        > <i class="download icon"></i> Download </a></p>

        09apr28a_viron01.mrc,  Tilt Series (Pixel Size 0.52 nm), 587.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2009-04-28-1/rawdata/09apr28a_viron01.mrc"
        > <i class="download icon"></i> Download </a></p>

        09apr28a_viron01_rec_bint2.mrc,  Reconstruction (Pixel Size 1.04 nm), 662.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2009-04-28-1/3dimage_6723/09apr28a_viron01_rec_bint2.mrc"
        > <i class="download icon"></i> Download </a></p>

        09apr28a_viron01_rec_bin2_part01-03bnad.mrc,  Reconstruction (Pixel Size 1.04 nm), 46.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2009-04-28-1/3dimage_6724/09apr28a_viron01_rec_bin2_part01-03bnad.mrc"
        > <i class="download icon"></i> Download </a></p>

        viron01_part01-3_slicer002.tif,  1.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2009-04-28-1/file_2589/viron01_part01-3_slicer002.tif"
        > <i class="download icon"></i> Download </a></p>

        viron01_part02_shell_2.png,  275.2 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2009-04-28-1/file_2590/viron01_part02_shell_2.png"
        > <i class="download icon"></i> Download </a></p>

        viron01_part03_shell_1.png,  246.0 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2009-04-28-1/file_2591/viron01_part03_shell_1.png"
        > <i class="download icon"></i> Download </a></p>