cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15131/shef.data.12735251
title: Raw data for 'Bacteria solve the problem of crowding by moving slowly'

description: These .zip files contain the raw data associated with the manuscript 'Bacteria solve the problem of crowding by moving slowly' (Meacock, O.J., Doostmohammadi, A., Yeomans, J.M., Foster, K.R., Durham, W.M., 2020). The contents consists of the following folders:<br>-<b>Cell morphology data</b>: Data used to measure the length of WT and pilH cells at exponential-phase in liquid culture and in the monolayer. Used in Extended Data Fig. 6a.-<b>Liquid culture competition CFUs</b>: Spreadsheet containing the raw CFU counts associated with Extended Data Fig. 8b.-<b>Low-density cell tracks</b>: Tracks used to measure motility and shape of strains under low density subsurface conditions. Used in Extended Data Figs. 1c, 3b, 6a, 9d.-<b>Monolayer cell and defect tracks</b>: Defect and cell tracks from high-density WT and pilH subsurface monolayers. Used in Figs. 1g, 3e-f, Extended Data Figs. 3a and 4.-<b>Raw confocal microscopy data</b>: Raw confocal imaging files of surficial and subsurficial colonies. Used in Fig. 1d, Extended Data Fig. 2a.-<b>Raw edge composition snapshots</b>: Raw images used to generate Fig. 2g, Extended Data Fig. 10c-e.-<b>Raw high-resolution rosette data</b>: Raw and partially processed imaging data associated with the rosettes presented in Fig. 4d-f and Extended Data Fig. 7.-<b>Subsurface colony composition and packing fraction data</b>: Spreadsheets containing measurements of colony edge position, edge population composition and edge packing fraction, used to generate Fig. 2c-e, Extended Data Figs. 9b,c, 10a,b.-<b>Subsurface colony edge coordinates</b>: Spreadsheets containing measurements of colony edge position, used to generate Fig. 1f,g, Extended Data Fig. 1a,b.-<b>Surficial colony composition measurements</b>: Raw CFU counts and images used to generate Fig. 2a,b.<br>For further details on the format of individual files, please refer to the readme.txt files in each folder.
DOI: 10.15131/shef.data.12735251.v1
title: Raw data for 'Bacteria solve the problem of crowding by moving slowly'

description: These .zip files contain the raw data associated with the manuscript 'Bacteria solve the problem of crowding by moving slowly' (Meacock, O.J., Doostmohammadi, A., Yeomans, J.M., Foster, K.R., Durham, W.M., 2020). The contents consists of the following folders:<br>-<b>Cell morphology data</b>: Data used to measure the length of WT and pilH cells at exponential-phase in liquid culture and in the monolayer. Used in Extended Data Fig. 6a.-<b>Liquid culture competition CFUs</b>: Spreadsheet containing the raw CFU counts associated with Extended Data Fig. 8b.-<b>Low-density cell tracks</b>: Tracks used to measure motility and shape of strains under low density subsurface conditions. Used in Extended Data Figs. 1c, 3b, 6a, 9d.-<b>Monolayer cell and defect tracks</b>: Defect and cell tracks from high-density WT and pilH subsurface monolayers. Used in Figs. 1g, 3e-f, Extended Data Figs. 3a and 4.-<b>Raw confocal microscopy data</b>: Raw confocal imaging files of surficial and subsurficial colonies. Used in Fig. 1d, Extended Data Fig. 2a.-<b>Raw edge composition snapshots</b>: Raw images used to generate Fig. 2g, Extended Data Fig. 10c-e.-<b>Raw high-resolution rosette data</b>: Raw and partially processed imaging data associated with the rosettes presented in Fig. 4d-f and Extended Data Fig. 7.-<b>Subsurface colony composition and packing fraction data</b>: Spreadsheets containing measurements of colony edge position, edge population composition and edge packing fraction, used to generate Fig. 2c-e, Extended Data Figs. 9b,c, 10a,b.-<b>Subsurface colony edge coordinates</b>: Spreadsheets containing measurements of colony edge position, used to generate Fig. 1f,g, Extended Data Fig. 1a,b.-<b>Surficial colony composition measurements</b>: Raw CFU counts and images used to generate Fig. 2a,b.<br>For further details on the format of individual files, please refer to the readme.txt files in each folder.
DOI: 10.5281/zenodo.4288514
title: VR-Together Pilot 3: Geometry of living room, bedroom. Materials, textures and illumination

description: VR-Together Pilot 3 geometry of living room and bedroom, materials, textures and illumination. This dataset contains de material created for the Pilot 3 of the VR-Together project. In particular, it contains the following material: Geometry of the living room Geometry of the bedroom Objects Textures Illumination scheme All the previous material has been created in Unity. VR-Together has been funded by the European Commission as part of the H2020 program, under the grant agreement 762111.
DOI: 10.5281/zenodo.4288513
title: VR-Together Pilot 3: Geometry of living room, bedroom. Materials, textures and illumination

description: VR-Together Pilot 3 geometry of living room and bedroom, materials, textures and illumination. This dataset contains de material created for the Pilot 3 of the VR-Together project. In particular, it contains the following material: Geometry of the living room Geometry of the bedroom Objects Textures Illumination scheme All the previous material has been created in Unity. VR-Together has been funded by the European Commission as part of the H2020 program, under the grant agreement 762111.
DOI: 10.6084/m9.figshare.13280507
title: A quick policy to filter reactions based on feasibility in AI-guided retrosynthetic planning

description: This is public data to be used with the aizynthfinder tool for retrosynthesis planning (https://github.com/MolecularAI/aizynthfinder)<br>Four filter policies derived from USPTO dataset is available.<br>These are Keras checkpoint files.
DOI: 10.5281/zenodo.4288582
title: Brazilian Scientific Publication Records and Author Affiliations from Lattes until Feb 2017 (Anonymized)

description: This file contains anonymized data about researcher profiles and publication records available extracted from the Lattes Platform in in February 2017 using the LattesDataXplorer tool. Lattes is a vast repository of researchers' curriculum vitae, widely adopted in Brazil. This platform is maintained by the Brazilian National Council of Scientific and Technological Development (CNPq) and is an internationally renowned initiative. In the zipped file, there are two files: anon_authors.csv contains data about researchers. It has 3 columns profile: researcher anonymized id instituition: researcher affiliation zipcode: institution zip code anon_papers.csv contains data about researchers' publications. It has 4 columns: profile: researcher anonymized id year: publication year venue: publication venue authors: number of authors
description: {"references": ["Pessoa Junior GJ, Dias TMR, Silva THP, Laender AHF. On interdisciplinary collaborations in scientific coauthorship networks: the case of the Brazilian community. Scientometrics. 2020;124(3):2341\u20132360."]}
DOI: 10.6084/m9.figshare.13280525.v1
title: Cross NMI (on MP)

description: Pickled dataframe containing the Normalized Mutual Information (NMI) between matminer features computed on the Materials Project.<br>https://arxiv.org/abs/2004.14766<br>
DOI: 10.6084/m9.figshare.13280525
title: Cross NMI (on MP)

description: Pickled dataframe containing the Normalized Mutual Information (NMI) between matminer features computed on the Materials Project.<br>https://arxiv.org/abs/2004.14766<br>
DOI: 10.6084/m9.figshare.13280549
title: Table S1

description: <b>Table S1. Primers of IMSA, LAMP, and qPCR assays</b>
DOI: 10.6084/m9.figshare.13280549.v1
title: Table S1

description: <b>Table S1. Primers of IMSA, LAMP, and qPCR assays</b>
DOI: 10.6084/m9.figshare.13280576
title: Table S2

description: <b>Table S2. Detailed detection results of 84 milk samples by four independent assays</b>
DOI: 10.6084/m9.figshare.13280576.v1
title: Table S2

description: <b>Table S2. Detailed detection results of 84 milk samples by four independent assays</b>
DOI: 10.6084/m9.figshare.13280558
title: INTER-RATER RELIABILITY OF A CLASSIFICATION SYSTEM FOR ATHLETES WITH AUTISM SPECTRUM DISORDER IN ADAPTED JUDO COMPETITIONS

description: The purpose of this study is to evaluate the reliability of the recently developed classification system in adapted judo competitions.
DOI: 10.6084/m9.figshare.13280558.v2
title: INTER-RATER RELIABILITY OF A CLASSIFICATION SYSTEM FOR ATHLETES WITH AUTISM SPECTRUM DISORDER IN ADAPTED JUDO COMPETITIONS

description: The purpose of this study is to evaluate the reliability of the recently developed classification system in adapted judo competitions.
DOI: 10.6084/m9.figshare.13280558.v1
title: Copy of VALIDATION_Results v2.xlsx

description: The purpose of this study is to evaluate the reliability of the recently developed classification system in adapted judo competitions.
DOI: 10.21227/ak0a-5r69
title: Estimation of optimal wavelengths for atmospheric non-line-of-sight optical communication in the UV range of the spectrum in the daytime and at night for baseline distances from 50 m to 50 km

description: Dataset contains the results of calculations of the impulse responses (IPR) and of the signal-to-noise ratios (SNR) and the models of the atmosphere for the UV wavelength range that were used in the paper Mikhail V. Tarasenkov, Vladimir V. Belov, Egor S. Poznakharev "Estimation of optimal wavelengths for atmospheric non-line-of-sight optical communication in the UV range of the spectrum in the daytime and at night for baseline distances from 50 m to 50 km".
DOI: 10.21227/49g4-1f35
title: Estimation of optimal wavelengths for atmospheric non-line-of-sight optical communication in the UV range of the spectrum in the daytime and at night for baseline distances from 50 m to 50 km

description: Dataset contains the results of calculations of the impulse responses (IPR) and of the signal-to-noise ratios (SNR) and the models of the atmosphere for the UV wavelength range that were used in the paper Mikhail V. Tarasenkov, Vladimir V. Belov, Egor S. Poznakharev "Estimation of optimal wavelengths for atmospheric non-line-of-sight optical communication in the UV range of the spectrum in the daytime and at night for baseline distances from 50 m to 50 km".
DOI: 10.5445/ir/1000119139
title: Coupled Simulation of Flow-Induced Viscous and Elastic Anisotropy of Short-Fiber Reinforced Composites

description: The present work discusses the impact of the back coupling of the fiber orientation distribution on the base flow and on the fiber orientation itself during mold filling simulations. Flows through a channel and over a backward-facing step are investigated as representative abstracted real part geometries. Different closure approximations are considered for modeling the flow induced evolution of anisotropy. Results corresponding to the decoupled approach, in which the effect of fibers on local fluid properties is neglected, build the basis of comparison. The modeling is limited to a laminar, incompressible and isothermal flow of a fiber suspension consisting of rigid short fibers embedded in an isotropic Newtonian matrix fluid. A linear, anisotropic constitutive law is used in combination with a uniform fiber volume fraction of $10\,\%$ and an aspect ratio of $10$. To evaluate the impact of back coupling and of different closure methods in view of the solid the resulting anisotropic elastic properties are investigated based on the Mori-Tanaka method combined with an orientation average scheme. Regarding the possible range of the diagonal components of the orientation tensors the pointwise difference in fiber orientation between the decoupled and the coupled approach is found to be $\pm 10\,\%$ in the channel and $\pm 50\,\%$ in the backward-facing step, respectively. The viscosity and the elasticity tensor show both significant flow induced anisotropies as well as a strong dependence on closure and coupling.
DOI: 10.7488/67a0bbc1-9226-4ab8-8325-706ba2eccbf9
title: Graphic Scores: Gradations of Light

description: This is a suite of graphic scores: seven images that replace conventional music notation to direct experimental and improvised music. The scores are original prints that can sit on the music stand and also function as works of visual art to be framed on the gallery wall. This dataset consists of a video of the work. This dataset is held in the Edinburgh DataVault, directly accessible only to authorised University of Edinburgh users. External users may request access to a copy of the data by contacting the Principal Investigator, Contact Person or Data Manager named on this page. University of Edinburgh users who wish to have direct access should consult the information about retrieving data from the DataVault at: http://www.ed.ac.uk/is/research-support/datavault.
description: This is a suite of graphic scores: seven images that replace conventional music notation to direct experimental and improvised music. The scores are original prints that can sit on the music stand and also function as works of visual art to be framed on the gallery wall. ## Access ## This dataset is held in the Edinburgh DataVault, directly accessible only to authorised University of Edinburgh users. External users may request access to a copy of the data by contacting the Principal Investigator, Contact Person or Data Manager named on this page or email CAHSS REF: cahss.ref@ed.ac.uk. University of Edinburgh users who wish to have direct access should consult the information about retrieving data from the DataVault at: http://www.ed.ac.uk/is/research-support/datavault.
description: Ganter, J (2020) "Graphic Scores: Gradations of Light" Edinburgh DataVault.
DOI: 10.25646/7674
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.5281/zenodo.4288685
title: Scalp cooling in breast cancer patients treated with docetaxel-cyclophosphamide: Patient- and nurse-reported results

description: This dataset presents the data of a study to explore the patient- and nurse-reported results of scalp cooling in terms of hair loss and need for a wig/head cover in patients with breast cancer treated with 3-weekly docetaxel 75 mg/m² - cyclophosphamide 600 mg/m².
DOI: 10.5281/zenodo.4288684
title: Scalp cooling in breast cancer patients treated with docetaxel-cyclophosphamide: Patient- and nurse-reported results

description: This dataset presents the data of a study to explore the patient- and nurse-reported results of scalp cooling in terms of hair loss and need for a wig/head cover in patients with breast cancer treated with 3-weekly docetaxel 75 mg/m² - cyclophosphamide 600 mg/m².
DOI: 10.6084/m9.figshare.13280591
title: ImgOb_ML3E.Rdata

description: - The data is in .Rdata format.- The data represents the microwave emission returns from the SAR type radar.- These returns are in the matrix format.
DOI: 10.6084/m9.figshare.13280591.v1
title: ImgOb_ML3E.Rdata

description: - The data is in .Rdata format.- The data represents the microwave emission returns from the SAR type radar.- These returns are in the matrix format.
DOI: 10.6084/m9.figshare.13168874
title: Bircarb_CO2_crocodilian_hemoglobin

description: Crocodilians are reportedly unique among vertebrates in that their hemoglobin (Hb)-O2 affinity is allosterically regulated by bicarbonate ions. This unusual mode of allosteric control was originally inferred from indirect evidence and has not been verified by direct verification of bicarbonate binding tocrocodilian Hb. Here, we report results of equilibrium and kinetic experiments designed to distinguishand quantify the allosteric effects of CO2 and bicarbonate on Hb oxygenation in crocodilians. Studies onHb from spectacled caiman (Caiman crocodilus) revealed that both CO2 and bicarbonate stronglydecrease Hb-O2 affinity by binding with high affinity to the Hb, likely to the same positively charged site in the deoxy (T) protein conformation. We experimentally confirmed the same mode of allosteric regulation in the Hbs of a phylogenetically diverse set of other caiman, alligator, and crocodile species, suggesting that this novel allosteric property evolved &gt;80-100 million years ago in the common ancestor of modern crocodilians. We found that the spectacled caiman hemolysate resolves into two functionally identical Hb fractions, a tetramer and as a higher-order aggregate, both containing the enzyme carbonicanhydrase. We propose that crocodilian Hb and carbonic anhydrase act in concert, whereby Hb converts bound CO2 to bicarbonate in the systemic circulation, followed by conversion of bicarbonate back to CO2 by carbonic anhydrase during pulmonary transit. This tight linkage between O2 and CO2 transport allows considerable O2 release to tissues when CO2 and bicarbonate levels increase in the blood, and it facilitates transport of Hb-bound CO2 and bicarbonate at low blood O2 levels.
DOI: 10.6084/m9.figshare.13168874.v1
title: Bircarb_CO2_crocodilian_hemoglobin

description: Crocodilians are reportedly unique among vertebrates in that their hemoglobin (Hb)-O2 affinity is allosterically regulated by bicarbonate ions. This unusual mode of allosteric control was originally inferred from indirect evidence and has not been verified by direct verification of bicarbonate binding tocrocodilian Hb. Here, we report results of equilibrium and kinetic experiments designed to distinguishand quantify the allosteric effects of CO2 and bicarbonate on Hb oxygenation in crocodilians. Studies onHb from spectacled caiman (Caiman crocodilus) revealed that both CO2 and bicarbonate stronglydecrease Hb-O2 affinity by binding with high affinity to the Hb, likely to the same positively charged site in the deoxy (T) protein conformation. We experimentally confirmed the same mode of allosteric regulation in the Hbs of a phylogenetically diverse set of other caiman, alligator, and crocodile species, suggesting that this novel allosteric property evolved &gt;80-100 million years ago in the common ancestor of modern crocodilians. We found that the spectacled caiman hemolysate resolves into two functionally identical Hb fractions, a tetramer and as a higher-order aggregate, both containing the enzyme carbonicanhydrase. We propose that crocodilian Hb and carbonic anhydrase act in concert, whereby Hb converts bound CO2 to bicarbonate in the systemic circulation, followed by conversion of bicarbonate back to CO2 by carbonic anhydrase during pulmonary transit. This tight linkage between O2 and CO2 transport allows considerable O2 release to tissues when CO2 and bicarbonate levels increase in the blood, and it facilitates transport of Hb-bound CO2 and bicarbonate at low blood O2 levels.
DOI: 10.5281/zenodo.2596929
title: 1999-2017 - London SWT Weather data

description: 1999-2017 - London SWT Weather data <strong>Site:</strong> SWT Country\City\Location: UK\London\ Southwark WoodsfordTower <strong>SWT</strong> Latitude: 51.487760; Longitude: -0.091069 Anemometer height: 60 m Weather station owner: Bill Legassick, Southwark Council. Contact: Tel: 020 7525 4253 | Fax: 020 7525 5705 Email: Bill.Legassick@southwark.gov.uk <strong>Sensor: </strong> Sensor type:---- Model -------------: Date Installed Anemometer : CDL Windset (EC8) ......... : 1999 Rain gauge : Campbell Scientific ARG-100 : 1999 Temperature: T107_C .....................: 1999 Humidity : HMP45A .....................: 1999 <strong>Files:</strong> Are Zipped Filenames: Weather_Data_2008.CSV Filetype: comma delimited Header Row:Date and Time,Battery Voltage,CR10 Temperature,Wind Direction 10 Minutes,Wind Speed 10 Minutes,Wind Gust 10 Minutes,Hourly AverageDirection,Hourly Average Speed,Hourly Maximum Gust,Hourly Gust Time,Hourly Gust Direction,Last Minute Average Temperature,Total Hourly Rain,Average RH over previous minute,Maximum Hourly Air Temperature,Minimum Hourly Air Temperature,MaximumHourly Rainfall Rate,Time of Rainfall Data: hourly averages
DOI: 10.5281/zenodo.2596928
title: 1999-2017 - London SWT Weather data

description: 1999-2017 - London SWT Weather data <strong>Site:</strong> SWT Country\City\Location: UK\London\ Southwark WoodsfordTower <strong>SWT</strong> Latitude: 51.487760; Longitude: -0.091069 Anemometer height: 60 m Weather station owner: Bill Legassick, Southwark Council. Contact: Tel: 020 7525 4253 | Fax: 020 7525 5705 Email: Bill.Legassick@southwark.gov.uk <strong>Sensor: </strong> Sensor type:---- Model -------------: Date Installed Anemometer : CDL Windset (EC8) ......... : 1999 Rain gauge : Campbell Scientific ARG-100 : 1999 Temperature: T107_C .....................: 1999 Humidity : HMP45A .....................: 1999 <strong>Files:</strong> Are Zipped Filenames: Weather_Data_2008.CSV Filetype: comma delimited Header Row:Date and Time,Battery Voltage,CR10 Temperature,Wind Direction 10 Minutes,Wind Speed 10 Minutes,Wind Gust 10 Minutes,Hourly AverageDirection,Hourly Average Speed,Hourly Maximum Gust,Hourly Gust Time,Hourly Gust Direction,Last Minute Average Temperature,Total Hourly Rain,Average RH over previous minute,Maximum Hourly Air Temperature,Minimum Hourly Air Temperature,MaximumHourly Rainfall Rate,Time of Rainfall Data: hourly averages
DOI: 10.6084/m9.figshare.8153204
title: Genome size paper assemblies

description: Genome assemblies of:<br>- Leucocoprinus sp, fungal symbiont of Cyphomyrmex costatus. ID: MS140512-07. Sequenced with MiSeq at Royal Botanic Gardens, Kew. (Kew-Ccos)<br>- Leucocoprinus sp, fungal symbiont of Cyphomyrmex costatus. ID: 100610-02. From Nygaard et al 2016, Bioproject PRJNA295288. (CPH-Ccos)<br>- Leucoagaricus barssii, free-living saprotroph. ID: KM162561. From dried collections at Royal Botanic Gardens, Kew. (Lbarssii)<br>Assemblers: ABySS 2.0.0 (ABySS), SGA 0.10.15 (SGA), SPAdes 3.7.1 (SPAdes) and SOAPdenovo 2.04 complemented with GapCloser 1.12 (SOAPdenovo).<br>Corrected with Redundans 0.12a (redundans).<br><br>Filtered to contain only sequences &gt;500bp (filtered)<br>
DOI: 10.6084/m9.figshare.8153204.v1
title: Genome size paper assemblies

description: Genome assemblies of:<br>- Leucocoprinus sp, fungal symbiont of Cyphomyrmex costatus. ID: MS140512-07. Sequenced with MiSeq at Royal Botanic Gardens, Kew. (Kew-Ccos)<br>- Leucocoprinus sp, fungal symbiont of Cyphomyrmex costatus. ID: 100610-02. From Nygaard et al 2016, Bioproject PRJNA295288. (CPH-Ccos)<br>- Leucoagaricus barssii, free-living saprotroph. ID: KM162561. From dried collections at Royal Botanic Gardens, Kew. (Lbarssii)<br>Assemblers: ABySS 2.0.0 (ABySS), SGA 0.10.15 (SGA), SPAdes 3.7.1 (SPAdes) and SOAPdenovo 2.04 complemented with GapCloser 1.12 (SOAPdenovo).<br>Corrected with Redundans 0.12a (redundans).<br><br>Filtered to contain only sequences &gt;500bp (filtered)<br>
DOI: 10.6084/m9.figshare.13280660
title: Auxiliary data for quarantine figure

description: Dataset needed to generate Figure percentage of population under quarantine and the percentage ofmobility reduction IMredover the observation period
DOI: 10.6084/m9.figshare.13280660.v1
title: Auxiliary data for quarantine figure

description: Dataset needed to generate Figure percentage of population under quarantine and the percentage ofmobility reduction IMredover the observation period