cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/bb7b8vtwry
title: Saudi Arabia Public Roads Visual Pollution Dataset 

description: Visual Pollution (VP) is the visible deterioration and bad aesthetic quality of the natural and human-made landscapes. It also refers to the disruptive occurrence that limits the movability of the people on the public roads such as excavation barriers, potholes, and dilapidated sidewalks. The real VP dataset is collected from the kingdom of Saudi Arabia (KSA) regions via the Ministry of Municipal and Rural Affairs and Housing (MOMRAH) and used to develop the proposed deep learning framework. 

If you are using this dataset for research purpose kindly cite the following papers: 

1. Article Paper: "AlElaiwi, Mohammad, Mugahed A. Al-antari, Hafiz Farooq Ahmad, Areeba Azhar, Badar Almarri, and Jamil Hussain. "VPP: Visual Pollution Prediction Framework Based on a Deep Active Learning Approach Using Public Road Images." Mathematics 11, no. 1 (2022): 186."

2. Data Article: "AlElaiwi, M., Al-Antari, M. A., Ahmad, H. F., Azhar, A., Almarri, B., & Hussain, J. (2023). Visual pollution real images benchmark dataset on the public roads. Data in Brief, 50, 109491. https://doi.org/10.1016/j.dib.2023.109491"

3. Data repository itself: AlElaiwi, Mohammad; Ahmad, Hafiz; Hussain, Jamil; Al-antari, Mugahed; Almarri, Badar; Azhar, Areeba (2023), “Saudi Arabia Public Roads Visual Pollution Dataset ”, Mendeley Data, V3, doi: 10.17632/bb7b8vtwry.3
DOI: 10.17632/jgw6k9ms9s
title: Welk et al., 2023 - Invited review: The effect of milk feeding practices on dairy calf behavior, health, and performance - A systematic review

description: Supplementary Material (Protocol and Tables) for manuscript: Welk et al., 2023 -Invited review: The effect of milk feeding practices on dairy calf behavior, health, and performance - A systematic review. Journal of Dairy Science.
DOI: 10.25403/upresearchdata.20297163.v1
title: Mother tongue and social media influence on learners' English language proficiency

description: The data presents mother tongue and social media influence on second language learners' English proficiency. English is used as a medium for global communication, education, business, and research. Subsequently, universities in more than 130 countries determine prospective students' level of proficiency through English competency tests such as IELTS and TOEFL. This adds an additional burden to Grade 12 English FAL learners to be more proficient. The study was conducted through a qualitative approach with an interpretivist paradigm. It was theoretically framed on the Linguistic Interdependence Theory of Cummins(1978). The study adhered to Ethics committee approval which advocates for voluntary participation and anonymity of participants to protect identity.
DOI: 10.6084/m9.figshare.17162042.v1
title: shrimprices.csv

description: Data set for shrimp average prices econometric model projection
DOI: 10.6084/m9.figshare.28886738.v1
title: Derivation and Theoretical Significance of the Characteristic Velocityvc = h / (mL)

description: Quantum mechanics reveals that particles exhibit wave-like behavior governed by their de Broglie wavelength:λ_dB = h / (mv), where h is Planck’s constant, m is the particle’s mass, and v is its velocity. Observability of quantum effects (e.g., interference, diffraction) depends on how λ_dB compares to the characteristic length scale L of a system. This work derives a universal velocity scale, vc = h / (mL), that quantifies the kinematic regime where wave phenomena tied to L emerge most prominently.
DOI: 10.6084/m9.figshare.14173664.v1
title: Metatranscriptomes from the Chesapeake and Delaware Bays.xlsx

description: This table shows the accession numbers, sampling information and sequence statistics of metatranscriptomes from the Chesapeake and Delaware Bay water samples.
DOI: 10.17632/kjc422pbgf
title: Electric Vehicles 

description: Includes survey data for creating various constructs and related to identifying customer preference towards electric vehicles.
DOI: 10.6084/m9.figshare.12961817.v1
title: Figure 1. Microscopy with simultaneous 2-, 3- and 4 photon processes excited in fluorescent skin tumor xenografts in vivo.

description: Raw image data in ome.tiff format, supporting figure 1.
DOI: 10.6084/m9.figshare.15074253.v1
title: MIaMIA-SVDS

description: This data set consists of three parts: Subset-A provides more than 125,000 objects with bounding box annotation with category information of 101 videos for tiny object detection tasks; Subset-B segments more than 26,000 sperms in 10 videos as ground truth (GT) for tiny object tracking tasks; Subset-C provides more than 125,000 independent images of sperms and impurities for tiny object classification tasks.
DOI: 10.6084/m9.figshare.22336597.v1
title: Table_S4

description: Table S4 for Miller et al. <em>mSystems</em> Metaproteomics reveals functional partitioning and vegetational variation among permafrost-affected Arctic soil bacterial communities <br> Functional Group definitions from unique pairs of eggNOG predicted Gene Family name and eggNOG functional description string.
DOI: 10.6084/m9.figshare.25999672.v1
title: Platelet indices as diagnostic and prognostic markers in acute coronary syndrome

description: The study is aimed at looking the diagnostic and prognostic ability of platelet indices in acute coronary syndrome.
DOI: 10.6084/m9.figshare.26157934.v7
title: A summary of metagenome-assembled genomes (MAGs) and single-cell amplified genomes (SAGs) from Antarctic geothermal habitats

description: This dataset presents summaries of 77 dereplicated high-quality MAGs derived through HiFi metagenomic sequencing and 224 SAGs from two mountains in Antarctic geothermal habitats.<br>File 1: Supplementary_Table1 (Summary of MAGs characteristics)File 2: Supplementary_Table2 (Summary of SAGs characteristics)File 3: Code_availability (Custom code in the generation or processing of datasets)
DOI: 10.6084/m9.figshare.8784311.v1
title: LFP data for 8-Neuropixels recordings from Stringer et al 2019 Science

description: Companion to https://janelia.figshare.com/articles/Eight-probe_Neuropixels_recordings_during_spontaneous_behaviors/7739750<br>Each LFP file has 385 channels of int16 data at 2500Hz. They can be loaded directly into software like Neuroscope, and can be read in matlab like:<br>&gt;&gt; fid = fopen('thisfile.bin', 'r');&gt;&gt; dat = fread(fid, [385 Inf], '*int16');&gt;&gt; fclose(fid);<br><br>Note that the file may well be too large to fit into memory so you may not want to read "Inf" samples as in this example. <br>Each file has different start and end times, and there are drifts in the clocks between probes - so the timestamp files, which give the aligned timing information, must be used. The aligned timestamps are specified in a particular way: an Nx2 matrix where the first column is sample numbers and the second column is the time in seconds at which those samples occurred. Since LFP was sampled regularly, N=2, just the first and last sample. So, to get the time at which every sample occurred, use this line in matlab: <br>&gt;&gt; tsData = readNPY('...lf.timestamps.npy');&gt;&gt; allTS = interp1(tsData(:,1), tsData(:,2), tsData(1,1):tsData(2,1));<br>That's just linearly interpolating between the times given for the first and last samples.<br>An important note about data quality: The referencing was not functioning properly for several probes. The AP (i.e. high-pass filtered) data was essentially perfectly recovered using common average referencing, but this has not been assessed for the LFP data. So, please check the data quality carefully for whatever you plan to analyze, and if it looks noisy with matched noise across channels, try CAR to fix it.
DOI: 10.17632/kjjm4z87nj
title: A CUDA-based GPU engine for gprMax: Open source FDTD electromagnetic simulation software

description: The Finite-Difference Time-Domain (FDTD) method is a popular numerical modelling technique in computational electromagnetics. The volumetric nature of the FDTD technique means simulations often require extensive computational resources (both processing time and memory). The simulation of Ground Penetrating Radar (GPR) is one such challenge, where the GPR transducer, subsurface/structure, and targets must all be included in the model, and must all be adequately discretised. Additionally, forward simulations of GPR can necessitate hundreds of models with different geometries (A-scans) to be executed. This is exacerbated by an order of magnitude when solving the inverse GPR problem or when using forward models to train machine learning algorithms. We have developed one of the first open source GPU-accelerated FDTD solvers specifically focussed on modelling GPR. We designed optimal kernels for GPU execution using NVIDIA’s CUDA framework. Our GPU solver achieved performance throughputs of up to 1194 Mcells/s and 3405 Mcells/s on NVIDIA Kepler and Pascal architectures, respectively. This is up to 30 times faster than the parallelised (OpenMP) CPU solver can achieve on a commonly-used desktop CPU (Intel Core i7-4790K). We found the cost-performance benefit of the NVIDIA GeForce-series Pascal-based GPUs – targeted towards the gaming market – to be especially notable, potentially allowing many individuals to benefit from this work using commodity workstations. We also note that the equivalent Tesla-series P100 GPU – targeted towards data-centre usage – demonstrates significant overall performance advantages due to its use of high-bandwidth memory. The performance benefits of our GPU-accelerated solver were demonstrated in a GPR environment by running a large-scale, realistic (including dispersive media, rough surface topography, and detailed antenna model) simulation of a buried anti-personnel landmine scenario. The previous version of this program (AFBG_v1_0) may be found at http://dx.doi.org/10.1016/j.cpc.2016.08.020.
DOI: 10.17632/xmc894xmhv
title: Figure S1. Prevalence of prurigo nodularis by age, sex, race and ethnicity, and disease group.

description: Prevalence of prurigo nodularis by age, sex, race and ethnicity, and disease group.
DOI: 10.6084/m9.figshare.25000328.v1
title: Untitled Item<b>Açaí </b><b>(</b><b><i>E</i></b><b><i>uterpe oleracea </i></b><b>Mart</b><b><i>.</i></b><b>)</b><b> </b><b>green synthesis of silver nanoparticles: Antimicrobial efficacy and ecotoxicological assessment</b>

description: Data set of the biosynthesis of silver nanoparticles using aqueous extracts from the açaí fruit
DOI: 10.6084/m9.figshare.26898886.v1
title: Nanostring_GeoMx_HCC_9_2_24.csv

description: To investigate the transcriptional changes within tumor cell and macrophage neighborhoods of HCC, we performed spatially resolved transcriptomics using Nanostring GeoMx. We separately quantified the expression of 1812 genes within tumor-cell (pan CK+ve, CD45-/CD68-) and macrophage (pan CK-ve, CD45+/CD68+) areas of interest (AOIs). A total of 105 AOIs (macrophage (n=53) and epithelial (n=52) AOIs are included. We have uploaded the normalized expression profile of all the genes along with the sample annotation.
DOI: 10.6084/m9.figshare.28190078.v1
title: Exploring Keyhole Imagery’s Potential to detect landuse change between 1960s and 1980s

description: The study focuses on satellite imagery data from the USGS for a research area in China. The original vector data of the satellite imagery has been processed as follows:The imagery was categorized into three types based on resolution: meter-level, five-meter-level, and ten-meter-level, according to the classification in "Declassified Intelligence Satellite Photographs" (https://doi.org/10.3133/fs20083054).A 10 km interval grid of points was generated for the China region, and coverage information for each resolution type was collected for each grid point.The coverage frequency for each resolution type at each grid point. The coverage frequency for each resolution type at each period.Spatial distribution of imagery combination of different time periodsSpatial Distribution of repeated coverage across different periodsPython 2.7 combined with ArcGIS 10.2 was used for processing, and code was provided for each step.
DOI: 10.17632/5wtxz793my
title: Real-time, automatic, open-source sleep stage classification system using single EEG

description: Raw data for the paper.
DOI: 10.6084/m9.figshare.27152592.v1
title: Publication Dataset of Smart Tourism for Sustainable Tourism

description: The research & publication dataset of smart tourism for sustainable tourism were indexed by Scopus. This dataset contains 29 articles in PDF format and 1 SLR mapping in pdf format. The dataset contains several selected article publications according to inclusion criteria using the PRISMA protocol.
DOI: 10.6084/m9.figshare.27634032.v1
title: Source data for 'Navigating condensate microenvironment to enhance small molecule drug targeting'

description: This repository contains source data for Figure 1-6.
DOI: 10.17632/3g2b4sh65m
title: IoT Monitoring Dataset of Water Quality and Tilapia (Oreochromis niloticus) Health in Aquaculture Ponds in Montería, Colombia (2024))

description: Description
This dataset contains six months of water quality and tilapia (Oreochromis niloticus) health monitoring data collected from aquaculture ponds in Montería, Colombia. Using an IoT-based monitoring system, critical parameters such as dissolved oxygen (DO), pH, water temperature, and turbidity were recorded. Fish health indicators, including average fish weight and survival rate, are also included.
Data was collected from January to June 2024, with hourly readings to capture daily fluctuations and ensure comprehensive monitoring of aquaculture conditions and tilapia well-being.
________________________________________
Included Files
1. Data Model IoTMLCQ 2024.xlsx
o Contains sensor readings and fish health data collected over six months.
o Columns:
 Datetime: Date and time of each reading.
 Month: Data collection month (January to June).
 Average Fish Weight (g): Average weight of the tilapia fish in grams.
 Survival Rate (%): Percentage of fish survival during the monitoring period.
 Disease Occurrence (Cases): Number of disease cases observed.
 Temperature (°C): Water temperature readings.
 Dissolved Oxygen (mg/L): Levels of dissolved oxygen in the water.
 pH: Water pH values.
 Turbidity (NTU): Water turbidity measured in Nephelometric Turbidity Units (NTU).
 Oxygenation Automatic: Indicates if automatic oxygenation was applied (Yes/No).
 Oxygenation Interventions: Oxygenation interventions applied (Yes/No).
 Corrective Interventions: Number of corrective measures taken.
 Thermal Risk Index: Indicates if the thermal risk is "High" or "Normal."
 Low Oxygen Alert: Shows "Critical" if DO levels are below 5 mg/L, otherwise "Safe."
 Health Status: Fish health status, showing "At Risk" or "Stable" based on thermal and oxygen risk alerts.
________________________________________
Data Collection Method
Data was collected using IoT sensors strategically placed in the aquaculture ponds. Readings were taken every hour throughout the monitoring period. This dataset provides valuable insights into the relationship between water quality parameters and the health of tilapia (Oreochromis niloticus) in controlled aquaculture conditions.
________________________________________
Usage Notes
• This dataset is useful for research in aquaculture management, water quality monitoring, and predictive modeling of fish health and growth.
• Missing data due to sensor or communication failures were addressed using interpolation methods.
• Regular sensor calibrations were performed to ensure accuracy in the collected data.
DOI: 10.17632/xhtt8fy49h
title: Generation of an Anticoagulant Aptamer that Targets Factor V/Va and Disrupts the FVa-Membrane Interaction in Normal and COVID-19 Patient Samples. Soule et al

description: Coagulation cofactors profoundly regulate hemostasis and are appealing targets for anticoagulants. However, targeting such proteins has been challenging because they lack an active site. To address this, we isolate an RNA aptamer termed T18.3 that binds to both Factor V and Va (FV/FVa) with nanomolar affinity and demonstrates clinically relevant anticoagulant activity in both plasma and whole blood. The aptamer also shows synergy with low molecular weight heparin, and delivers potent anticoagulation in plasma collected from COVID-19 patients. Moreover, the aptamer's anticoagulant activity can be rapidly and efficiently reversed using protamine sulfate, which potentially allows fine-tuning of aptamer’s activity post-administration. We further show that the aptamer achieves its anticoagulant activity by abrogating FV/FVa interaction with phospholipid membranes. Our success in generating an anticoagulant aptamer targeting FV/Va demonstrates the feasibility of using cofactor-binding aptamers as therapeutic protein-inhibitors and reveals a unconventional working mechanism of aptamer by interrupting protein-membrane interactions.
DOI: 10.6084/m9.figshare.11423352.v1
title: Modern Hebrew dataset

description: Modern Hebrew characters
DOI: 10.6084/m9.figshare.4906361.v1
title: Table S5 from Common reef-building coral in the Northern Red Sea resistant to elevated temperature and acidification

description: Coral reefs are currently experiencing substantial ecological impoverishment as a result of anthropogenic stressors and the majority of reefs are facing immediate risk. Increasing ocean surface temperatures induce frequent coral mass bleaching events—the breakdown of the nutritional photo-symbiosis with intracellular algae (genus: <i>Symbiodinium</i>). Here, we report that <i>Stylophora pistillata</i> from a highly diverse reef in the Gulf of Aqaba showed no signs of bleaching despite spending 1.5 months at 1–2°C above their long-term summer maximum (amounting to 11 degree heating weeks) and a seawater pH of 7.8. Instead, their symbiotic dinoflagellates exhibited improved photochemistry, higher pigmentation and a doubling in net oxygen production, leading to a 51% increase in primary productivity. Nanoscale secondary ion mass spectrometry imaging revealed subtle cellular-level shifts in carbon and nitrogen metabolism under elevated temperatures, but overall host and symbiont biomass proxies were not significantly affected. Now living well below their thermal threshold in the Gulf of Aqaba, these corals have been evolutionary selected for heat tolerance during their migration through the warm Southern Red Sea after the last ice age. This may allow them to withstand future warming for a longer period of time, provided that successful environmental conservation measures are enacted across national boundaries in the region.
DOI: 10.17632/9kcy7fcfdv
title: Serum prolactin levels and mortality in adults without prolactinoma: a meta-analysis

description: Supplementary Files for submission at The Journal of Clinical Endocrinology and Metabolism.
DOI: 10.17632/d4s4897j46
title: Raw dataset of light control effects on semen proteomic of the red-winged tinamou

description: These data show profile proteomic of sperm and seminal plasma of red-winged tinamou (Rhynchotus rufescens) under the effects of light (natural light for controls versus 16 hours of light and 8 hours of darkness in treated birds), during of reproductive season. 20 males were randomly allocated to be Control (n = 10) or Artificial light (n = 10) groups. To sperm proteomics was used one sample from 10 birds (6 Control and 4 Artificial light groups) and for proteomics of seminal plasma were used two pools prepared with same samples from Artificial light group, the samples of the Control group had an insufficient volume to perform the proteomics. For this reason, the proteomics of seminal plasma was descriptive. Sperm and seminal plasma samples were individually prepared for proteomics (ESI Q-TOF MS/MS).
DOI: 10.6084/m9.figshare.14854161.v8
title: Supplementary Material-Multi-exposure Microscopic Image Fusion-Based Detail Enhancement Algorithm.

description: The multi-exposure image fusion results of nine "Aqualitas" image data sets. Multi-exposure microscopy images are fused for detail enhancement. The ambition is to preserve details in poorly illuminated and brightly illuminated regions of 3-D transparent diatom shells. The aforesaid objective is achieved by taking into account local information measure that select well-exposed regions across input exposures.<br>
DOI: 10.6084/m9.figshare.20549634.v1
title: Chilocyllium punctatum gene expression profiles v1

description: Quantified expression levels of all the annotated protein-coding genes on the C. punctatum genome.
DOI: 10.6084/m9.figshare.24456679.v1
title: Project management timeliness

description: An excel spreadsheet about the importance of managing timelines<br>
DOI: 10.6084/m9.figshare.12546074.v1
title: Fracture geometries

description: Three tuff fracture geometries scanned and processed by The University of Texas at Austin
DOI: 10.6084/m9.figshare.26278654.v3
title: PP2A:B55-p107/Eya3

description: Supporting data for manuscript
DOI: 10.6084/m9.figshare.26324524.v1
title: Supplementary_ table_1.docx

description: Supplementary material to the article "Effect of ghrelin on glucose tolerance, gut hormones, appetite, and food intake after sleeve gastrectomy"
DOI: 10.6084/m9.figshare.5782197.v2
title: Full Annotated LC QuAD dataset

description: Manually fully-annotated LC-QuAD dataset, to create a gold label data set for entity and relation linking over dbpedia. For each question, the keywords are classified as entity or predicate. Also these keywords are mapped to the uri of knowledge graph (dbpedia) corresponding to the SPARQL query.<br>
DOI: 10.6084/m9.figshare.28970519.v1
title: Achilles_Tendinopathy_CA_Data.xlsxUltrasonographic and Histological Data from a Rat Model of Achilles Tendinopathy Treated with Cinnamic Acid

description:  This dataset contains ultrasonographic and histological scores obtained from an experimental rat model of Achilles tendinopathy. Tendinopathy was induced via collagenase injection and evaluated on Days 21 and 35. The dataset includes total USG scores (based on echogenicity, neovascularization, and calcification) and total histological scores (based on fiber structure, alignment, nuclear morphology, cell density, inflammation, and neovascularization). The therapeutic effects of cinnamic acid (CA) at different dosages (10, 20, and 30 mg/kg) were assessed. These data support the analysis and findings reported in the related manuscript.
DOI: 10.6084/m9.figshare.6265763.v1
title: HMM code and input files

description: Contains data and code to run an HMM optimisation for Hermes insertion data.<br>Contains:<br>The predictors of insertion density:predictors.2016-10-06.tar.gzincludes:insertion motif similarity score (IMSS)nucleosome density scores<br>hidden Markov Model R code<br>transposon-hmm-7-cross-validation.R<br>sample config filelog.III.5A.tr-even.config.r #the code is run like so:cat transposon-hmm-7-cross-validation.R | \R --slave --args config.r input.Rda<br>We also include:<br>sample input files: all-log.and-predictors.2016-10-06.txt.Rda<br><br>Sample output files:<br>log.all-model5A.hmmresult.table.Rda<br><br>Hermes-containing read mapping scores:mapping.scores.txt.gz<br>
DOI: 10.25442/hku.20480172.v1
title: Geospatial data list

description: A list of geospatial data contained in this collection and their respective descriptions.
DOI: 10.6084/m9.figshare.12369209.v6
title: Genome Assembly and Annotation of 84K

description: <em>Populus alba</em> × <em>P. glandulosa</em> clone 84K is widely cultivated and used as a model tree in the molecular research of woody plants because it is very easy for gene transformation. In this study, we performed PacBio sequencing and assembled the genome with a size of 781.36 Mb (mega base).