DOI: 10.22002/0xrmk-mf341
title: Treponema primitia

description: Treponema primitia.  The rest of the files are in ~/Images/050811
description: <strong>Tilt Series Date:</strong> 2005-08-11</p>
<strong>Data Taken By:</strong> Gavin Murphy</p>
<strong>Species / Specimen:</strong> Treponema primitia</p>
<strong>Strain:</strong> ZAS-2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 30.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, bsoft</p>
<strong>Collaborators and Roles:</strong> Cells provided by Eric Matson, Jared Leadbetter; Data collected and processed by Gavin Murphy</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown in standard media around exponential growth.  Removed from anaerobic tube with syringe.  Directly applied to grids, no centrifugation</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity...</p>
  T3_050811_tilt.jpg: * associated to rawdata T3_050811_rec.jpg: file associated to 3D Image #8 T3_050811_seg.jpg: file associated to 3D Image #8 slicer000.jpg: file associated to 3D Image #8 T3050811-NicePic.jpg: file associated to 3D Image #8 snapshot.jpg: file associated to 3D Image #8 gme2005-08-11-3_slicer9522.jpg: Trepanema maritima .  flat vesicle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-3/rawdata/</p>T3_S497G2_22k12d110e.mrc,  Tilt Series (Pixel Size 0.98 nm), 1.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-3/rawdata/T3_S497G2_22k12d110e.mrc"
        > <i class="download icon"></i> Download </a></p>

        T3B2s.mrc,  Reconstruction (Pixel Size 0.0 nm), 390.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-3/3dimage_7/T3B2s.mrc"
        > <i class="download icon"></i> Download </a></p>

        T3B2PadRotSizMir.mrc,  Reconstruction (Pixel Size 0.0 nm), 144.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-3/3dimage_8/T3B2PadRotSizMir.mrc"
        > <i class="download icon"></i> Download </a></p>

        T3B2sBB_28_part.pif,  Reconstruction (Pixel Size 0.0 nm), 704.0 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-3/3dimage_9/T3B2sBB_28_part.pif"
        > <i class="download icon"></i> Download </a></p>

        slicer000.tif,  file associated to 3D Image #8, 649.2 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-3/file_11/slicer000.tif"
        > <i class="download icon"></i> Download </a></p>

        T3050811-NicePic.tif,  file associated to 3D Image #8, 1.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-3/file_12/T3050811-NicePic.tif"
        > <i class="download icon"></i> Download </a></p>

        snapshot.tif,  file associated to 3D Image #8, 228.1 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-08-11-3/file_13/snapshot.tif"
        > <i class="download icon"></i> Download </a></p>