cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e111201v3
title: Basic Human Values and Attitudes Towards a Universal Basic Income in Europe

description: This study contributes to the emerging literature on public opinion on a universal basic income (UBI) not only by investigating the role of basic human values in influencing support for UBI but also by examining the moderating role of welfare state development, which can be measured by levels of social protection or material deprivation, in the association between basic human values and UBI support. European Social Survey Round 8 (2016), which is a cross-national survey that asked respondents for the first time whether or not they support a UBI scheme, has the well-established 21-item measure of human values that is based on the Schwartz (1992) theory of basic human values. Among the 10 basic human values, self-enhancement values (individual universalism and benevolence) form a bipolar dimension with self-transcendence values (power and achievement); these values are considered relevant in explaining attitudes towards UBI. The primary results of the multilevel analysis show that individual universalism is positively and significantly associated with support for UBI, while benevolence has a negative relationship; power and achievement are positively linked to support for UBI. Except for individual universalism, however, the other three values have unexpected relationships with UBI support. In addition, an interesting part of the findings is that the association between individual universalism and support for UBI is moderated by the level of welfare development expressed by social protection or material deprivation. That is, in advanced welfare states, people who are more inclined towards individual universalism are more likely to support for UBI; by contrast, in underdeveloped welfare states, this relationship is not apparent.<br>
DOI: 10.6084/m9.figshare.14251803
title: Additional file 2 of Birthweight DNA methylation signatures in infant saliva

description: Additional file 2. Results from the look-up of PACE findings.
DOI: 10.6084/m9.figshare.14251806
title: Additional file 3 of Birthweight DNA methylation signatures in infant saliva

description: Additional file 3. Look-up of the 87 saliva CpG sites in the PACE birthweight cord blood EWAS.
DOI: 10.6084/m9.figshare.14251806.v1
title: Additional file 3 of Birthweight DNA methylation signatures in infant saliva

description: Additional file 3. Look-up of the 87 saliva CpG sites in the PACE birthweight cord blood EWAS.
DOI: 10.6084/m9.figshare.14251803.v1
title: Additional file 2 of Birthweight DNA methylation signatures in infant saliva

description: Additional file 2. Results from the look-up of PACE findings.
DOI: 10.6084/m9.figshare.14251830
title: Additional file 2 of Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages

description: Additional file 2: Supplementary Table 1. Results of the CBS detection procedure and the validation using Mash Screen. Each row reports: CBS ID (i.e. the CBS MAG representative), metagenomic sample, estimated depth of coverage (mean, standard deviation, first quartile, median third quartile), number of mapped reads, ANI between the consensus sequences and the CBS representative, coverage breadths at depths from 1 to 5, Mash Screen containment score, number of shared hashes, median multiplicity and containment score p-value. Supplementary Table 2. Assembly statistics and taxonomic classification of the MAGs. Supplementary Table 3. Abundance of CBS at phylum level, expressed as percentage of reads that could be mapped to the representative CBS. Median: median; Q1 and Q3: first and third quartile; IQR: interquartile range; Mean: mean; SD: standard deviation; #CBS: number of candidate bacterial species belonging to the phylum. Supplementary Table 4. Increase in the number of bacterial species for each taxonomic Order provided by the data in the present study, compared to the data available in the GTDB database. Supplementary Table 5. Sample metadata. Geographic coordinates of the sampling sites, accession numbers of the raw sequences, accession numbers and N50 of the assembled metagenomes on the JGI IMG/M portal. Supplementary Table 6. Prevalence and taxonomic classification for each CBS representative. Supplementary Table 7. Summary of Bayesian divergence estimates. For each order we report the mean age of its origin (OO: the split of the order from the closest order) and the 95% CI (OO max and OO min), the origin of the oldest uniquely Antarctic clade (AOO1, the split of the Antarctic clade from a non-Antarctic lineage of the same order), and, where present, the origin of the second oldest antarctic clade (AOO2). See Supplementary Data 1. Supplementary Table 8. Number of predicted proteins (NProts) and of proteins that had a match in the EggNOG database (NHitsOG) and that could be associated to a term in the Gene Ontology (NHitsGO) or had a match in the KEGG and COG databases (NHitsKEGG and NHitsCOG, respectively). Supplementary Table 9. Number of KEGG orthologs characteristic of the Antarctic or reference Jiangellales genomes. The Fisher’s exact test (uncorrected p&lt;0.05) was performed to identify unevenly distributed orthologs between the two groups. Supplementary Table 10. Number of KEGG orthologs characteristic of the Antarctic or reference Thermomicrobiales genomes. The Fisher’s exact test (uncorrected p&lt;0.05) was performed to identify unevenly distributed orthologs between the two groups.
DOI: 10.6084/m9.figshare.14251830.v1
title: Additional file 2 of Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages

description: Additional file 2: Supplementary Table 1. Results of the CBS detection procedure and the validation using Mash Screen. Each row reports: CBS ID (i.e. the CBS MAG representative), metagenomic sample, estimated depth of coverage (mean, standard deviation, first quartile, median third quartile), number of mapped reads, ANI between the consensus sequences and the CBS representative, coverage breadths at depths from 1 to 5, Mash Screen containment score, number of shared hashes, median multiplicity and containment score p-value. Supplementary Table 2. Assembly statistics and taxonomic classification of the MAGs. Supplementary Table 3. Abundance of CBS at phylum level, expressed as percentage of reads that could be mapped to the representative CBS. Median: median; Q1 and Q3: first and third quartile; IQR: interquartile range; Mean: mean; SD: standard deviation; #CBS: number of candidate bacterial species belonging to the phylum. Supplementary Table 4. Increase in the number of bacterial species for each taxonomic Order provided by the data in the present study, compared to the data available in the GTDB database. Supplementary Table 5. Sample metadata. Geographic coordinates of the sampling sites, accession numbers of the raw sequences, accession numbers and N50 of the assembled metagenomes on the JGI IMG/M portal. Supplementary Table 6. Prevalence and taxonomic classification for each CBS representative. Supplementary Table 7. Summary of Bayesian divergence estimates. For each order we report the mean age of its origin (OO: the split of the order from the closest order) and the 95% CI (OO max and OO min), the origin of the oldest uniquely Antarctic clade (AOO1, the split of the Antarctic clade from a non-Antarctic lineage of the same order), and, where present, the origin of the second oldest antarctic clade (AOO2). See Supplementary Data 1. Supplementary Table 8. Number of predicted proteins (NProts) and of proteins that had a match in the EggNOG database (NHitsOG) and that could be associated to a term in the Gene Ontology (NHitsGO) or had a match in the KEGG and COG databases (NHitsKEGG and NHitsCOG, respectively). Supplementary Table 9. Number of KEGG orthologs characteristic of the Antarctic or reference Jiangellales genomes. The Fisher’s exact test (uncorrected p&lt;0.05) was performed to identify unevenly distributed orthologs between the two groups. Supplementary Table 10. Number of KEGG orthologs characteristic of the Antarctic or reference Thermomicrobiales genomes. The Fisher’s exact test (uncorrected p&lt;0.05) was performed to identify unevenly distributed orthologs between the two groups.
DOI: 10.6084/m9.figshare.14251822.v1
title: Additional file 1 of Long-term persistence of supernumerary B chromosomes in multiple species of Astyanax fish

description: Additional file 1: Table S1. Diversity of B chromosome in the Astyanax genus. 2n = diploid chromosome number. Bs = range of B chromosomes found in each population. a = acrocentric. m = metacentric. sm = submetacentric. st = subtelocentric. A. jordani and A. mexicanus can be considered synonymous, since both references analyzed the blind tetra fish [24, 25]. Table S2. Statistics of 21 B-linked genes in A. scabripinnis and A. paranae. Genomic fold change (gFC) was calculated as the log2(1B/0B) quotient between the mean nucleotide coverages along transcript length. HC = High coverage region. LC = Low coverage region. IC = Irregular Coverage. UC = Uniform Coverage. Figures in the “ind. gFC ≥ 0.585” column indicates the number of 1B A. scabripinnis individuals which met this condition. In the “qPCR” columns, 1 indicates validation of gene presence on the B chromosome. Table S3. Validation of B-linked genes by qPCR. Genomic fold change (gFC) was calculated as the log2(1B/0B) quotient between the mean nucleotide coverages along transcript length. IC = Irregular Coverage. UC = Uniform Coverage. CI = confidence interval. The blank spaces indicate experiments not performed. In the “Binary information” columns, 1 means qPCR validation. Asc = A. scabripinnis. Apa = A. paranae. Abo = A. bockmanni. Afa = A. fasciatus. Table S4. Counts of reference (Ref) and alternative (Alt = B-specific) variants in all gDNA and RNA libraries analyzed in A. scabripinnnis and A. paranae. Table S5. Nucleotide variation found in the B chromosome gene paralogs of A. scabripinnis. To score the number of variants, we distinguished between substitutions (s), deletions (d) or insertions (i) with respect to the A chromosome paralogs. We considered deletions and insertions as a single mutation event when they involved two or more consecutive nucleotides. dS = number of synonymous substitutions. dN = number of non-synonymous substitutions. ps = proportion of variable sites. Table S6. Gene expression profile and transcription intensity of B chromosomes. See Methods for details. Table S7. Localities, diploid chromosome number (2n) and number of samples (N) of the Astyanax individuals analyzed cytogenetically in this study. All populations harbor a large metacentric B chromosome. Table S8. Description of the materials analyzed by quantitative PCR. Table S9. Description of the Illumina-sequenced materials. Table S10. Primers designed in this study for PCR amplification of B-linked genes.
DOI: 10.6084/m9.figshare.14251822
title: Additional file 1 of Long-term persistence of supernumerary B chromosomes in multiple species of Astyanax fish

description: Additional file 1: Table S1. Diversity of B chromosome in the Astyanax genus. 2n = diploid chromosome number. Bs = range of B chromosomes found in each population. a = acrocentric. m = metacentric. sm = submetacentric. st = subtelocentric. A. jordani and A. mexicanus can be considered synonymous, since both references analyzed the blind tetra fish [24, 25]. Table S2. Statistics of 21 B-linked genes in A. scabripinnis and A. paranae. Genomic fold change (gFC) was calculated as the log2(1B/0B) quotient between the mean nucleotide coverages along transcript length. HC = High coverage region. LC = Low coverage region. IC = Irregular Coverage. UC = Uniform Coverage. Figures in the “ind. gFC ≥ 0.585” column indicates the number of 1B A. scabripinnis individuals which met this condition. In the “qPCR” columns, 1 indicates validation of gene presence on the B chromosome. Table S3. Validation of B-linked genes by qPCR. Genomic fold change (gFC) was calculated as the log2(1B/0B) quotient between the mean nucleotide coverages along transcript length. IC = Irregular Coverage. UC = Uniform Coverage. CI = confidence interval. The blank spaces indicate experiments not performed. In the “Binary information” columns, 1 means qPCR validation. Asc = A. scabripinnis. Apa = A. paranae. Abo = A. bockmanni. Afa = A. fasciatus. Table S4. Counts of reference (Ref) and alternative (Alt = B-specific) variants in all gDNA and RNA libraries analyzed in A. scabripinnnis and A. paranae. Table S5. Nucleotide variation found in the B chromosome gene paralogs of A. scabripinnis. To score the number of variants, we distinguished between substitutions (s), deletions (d) or insertions (i) with respect to the A chromosome paralogs. We considered deletions and insertions as a single mutation event when they involved two or more consecutive nucleotides. dS = number of synonymous substitutions. dN = number of non-synonymous substitutions. ps = proportion of variable sites. Table S6. Gene expression profile and transcription intensity of B chromosomes. See Methods for details. Table S7. Localities, diploid chromosome number (2n) and number of samples (N) of the Astyanax individuals analyzed cytogenetically in this study. All populations harbor a large metacentric B chromosome. Table S8. Description of the materials analyzed by quantitative PCR. Table S9. Description of the Illumina-sequenced materials. Table S10. Primers designed in this study for PCR amplification of B-linked genes.
DOI: 10.6084/m9.figshare.14251825.v1
title: Additional file 2 of Long-term persistence of supernumerary B chromosomes in multiple species of Astyanax fish

description: Additional file 2. Dataset 1. Spreadsheet showing the procedure for CDS selection by applying consecutive filters: 1) All contigs showing mappings in gDNA libraries (40,679 contigs), 2a) Contigs with average number of copies, in the 0B libraries of A. scabripinnis, ranging between 0.5 and 4 (33,297 contigs), 2b) Contigs with average number of copies in the 0B libraries of A. paranae between 0.5 and 4 (32,844 contigs), 3a) Contigs showing genomic fold change due to B chromosome presence [gFC = log2(1B/0B)] higher than 0.585 in at least 1B individual of A. scabripinnis (1928 contigs), 3b) Contigs showing genomic fold change due to B chromosome presence [gFC = log2(1B/0B)] higher than 1 in the 1B individual of A. paranae (377 contigs), 4a) Contigs showing genomic fold change due to B chromosome presence [gFC = log2(1B/0B)] higher than 0.585 in all the three 1B individuals of A. scabripinnis (431 contigs), 5a) Contigs of A. scabripinnis annotated from Astyanax mexicanus genome excluding repetitive elements (227 contigs), 5b) Contigs of A. paranae annotated from Astyanax mexicanus genome excluding repetitive elements (257 contigs), 6) Combination of 5a and 5b data (450 contigs), 7) qPCR results associated with each contig. Note that the irl1b and lap4a contigs have gFC ≥ 0.585 in only two individuals of A. scabripinnis, while the urok gene meets this criterion in only one individual of this species, but the three genes have average gFC value about 0.65. Also note that the gFC of the urok gene in A. paranae is close to the threshold used.
DOI: 10.6084/m9.figshare.14251825
title: Additional file 2 of Long-term persistence of supernumerary B chromosomes in multiple species of Astyanax fish

description: Additional file 2. Dataset 1. Spreadsheet showing the procedure for CDS selection by applying consecutive filters: 1) All contigs showing mappings in gDNA libraries (40,679 contigs), 2a) Contigs with average number of copies, in the 0B libraries of A. scabripinnis, ranging between 0.5 and 4 (33,297 contigs), 2b) Contigs with average number of copies in the 0B libraries of A. paranae between 0.5 and 4 (32,844 contigs), 3a) Contigs showing genomic fold change due to B chromosome presence [gFC = log2(1B/0B)] higher than 0.585 in at least 1B individual of A. scabripinnis (1928 contigs), 3b) Contigs showing genomic fold change due to B chromosome presence [gFC = log2(1B/0B)] higher than 1 in the 1B individual of A. paranae (377 contigs), 4a) Contigs showing genomic fold change due to B chromosome presence [gFC = log2(1B/0B)] higher than 0.585 in all the three 1B individuals of A. scabripinnis (431 contigs), 5a) Contigs of A. scabripinnis annotated from Astyanax mexicanus genome excluding repetitive elements (227 contigs), 5b) Contigs of A. paranae annotated from Astyanax mexicanus genome excluding repetitive elements (257 contigs), 6) Combination of 5a and 5b data (450 contigs), 7) qPCR results associated with each contig. Note that the irl1b and lap4a contigs have gFC ≥ 0.585 in only two individuals of A. scabripinnis, while the urok gene meets this criterion in only one individual of this species, but the three genes have average gFC value about 0.65. Also note that the gFC of the urok gene in A. paranae is close to the threshold used.
DOI: 10.6084/m9.figshare.14251834
title: Additional file 3 of Long-term persistence of supernumerary B chromosomes in multiple species of Astyanax fish

description: Additional file 3: Dataset 2. Relative transcription levels for the nobox gene in B-carrying and B-lacking individuals. NREQ = Normalized relative expression quantity. (XLS 37 kb)
DOI: 10.6084/m9.figshare.14251834.v1
title: Additional file 3 of Long-term persistence of supernumerary B chromosomes in multiple species of Astyanax fish

description: Additional file 3: Dataset 2. Relative transcription levels for the nobox gene in B-carrying and B-lacking individuals. NREQ = Normalized relative expression quantity. (XLS 37 kb)
DOI: 10.6084/m9.figshare.14251957
title: Additional file 2 of Identification of regulatory factors promoting embryogenic callus formation in barley through transcriptome analysis

description: Additional file 2. Supplementary raw data of DEGs.
DOI: 10.6084/m9.figshare.14251957.v1
title: Additional file 2 of Identification of regulatory factors promoting embryogenic callus formation in barley through transcriptome analysis

description: Additional file 2. Supplementary raw data of DEGs.
DOI: 10.6084/m9.figshare.14251960
title: Additional file 3 of Identification of regulatory factors promoting embryogenic callus formation in barley through transcriptome analysis

description: Additional file 3. Supplementary raw data of TFs.
DOI: 10.6084/m9.figshare.14251960.v1
title: Additional file 3 of Identification of regulatory factors promoting embryogenic callus formation in barley through transcriptome analysis

description: Additional file 3. Supplementary raw data of TFs.
DOI: 10.6084/m9.figshare.14251963.v1
title: Additional file 4 of Identification of regulatory factors promoting embryogenic callus formation in barley through transcriptome analysis

description: Additional file 4. Supplementary raw data for genes in heatmap.
DOI: 10.6084/m9.figshare.14251963
title: Additional file 4 of Identification of regulatory factors promoting embryogenic callus formation in barley through transcriptome analysis

description: Additional file 4. Supplementary raw data for genes in heatmap.
DOI: 10.6084/m9.figshare.14251998
title: Additional file 1 of What is the impact of human wastewater biosolids (sewage sludge) application on long-term soil carbon sequestration rates? A systematic review protocol

description: Additional file 1. Filled in ROSES checklist and meta-data form for this systematic review protocol manuscript.
DOI: 10.6084/m9.figshare.14252001
title: Additional file 2 of What is the impact of human wastewater biosolids (sewage sludge) application on long-term soil carbon sequestration rates? A systematic review protocol

description: Additional file 2. Search string results exercise, benchmark study list, and related reviews.
DOI: 10.6084/m9.figshare.14251998.v1
title: Additional file 1 of What is the impact of human wastewater biosolids (sewage sludge) application on long-term soil carbon sequestration rates? A systematic review protocol

description: Additional file 1. Filled in ROSES checklist and meta-data form for this systematic review protocol manuscript.
DOI: 10.6084/m9.figshare.14252004
title: Additional file 3 of What is the impact of human wastewater biosolids (sewage sludge) application on long-term soil carbon sequestration rates? A systematic review protocol

description: Additional file 3. Data coding and extraction form to be used for the systematic review and meta-analysis
DOI: 10.6084/m9.figshare.14252001.v1
title: Additional file 2 of What is the impact of human wastewater biosolids (sewage sludge) application on long-term soil carbon sequestration rates? A systematic review protocol

description: Additional file 2. Search string results exercise, benchmark study list, and related reviews.
DOI: 10.6084/m9.figshare.14252004.v1
title: Additional file 3 of What is the impact of human wastewater biosolids (sewage sludge) application on long-term soil carbon sequestration rates? A systematic review protocol

description: Additional file 3. Data coding and extraction form to be used for the systematic review and meta-analysis
DOI: 10.6084/m9.figshare.14252044.v1
title: Additional file 1 of The Rice GLYCINE-RICH PROTEIN 3 Confers Drought Tolerance by Regulating mRNA Stability of ROS Scavenging-Related Genes

description: Additional file 1: Table S1. List of primers used in this study
DOI: 10.6084/m9.figshare.14252047.v1
title: Additional file 2 of The Rice GLYCINE-RICH PROTEIN 3 Confers Drought Tolerance by Regulating mRNA Stability of ROS Scavenging-Related Genes

description: Additional file 2: Table S2. List of up- and down-regulated genes in OsGRP3OE transgenic plants compared to non-transgenic plants
DOI: 10.6084/m9.figshare.14252044
title: Additional file 1 of The Rice GLYCINE-RICH PROTEIN 3 Confers Drought Tolerance by Regulating mRNA Stability of ROS Scavenging-Related Genes

description: Additional file 1: Table S1. List of primers used in this study
DOI: 10.6084/m9.figshare.14252050
title: Additional file 3 of The Rice GLYCINE-RICH PROTEIN 3 Confers Drought Tolerance by Regulating mRNA Stability of ROS Scavenging-Related Genes

description: Additional file 3: Table S3. Up-regulated genes in OsGRP3OE transgenic rice plants in comparison with non-transgenic plants
DOI: 10.6084/m9.figshare.14252047
title: Additional file 2 of The Rice GLYCINE-RICH PROTEIN 3 Confers Drought Tolerance by Regulating mRNA Stability of ROS Scavenging-Related Genes

description: Additional file 2: Table S2. List of up- and down-regulated genes in OsGRP3OE transgenic plants compared to non-transgenic plants
DOI: 10.6084/m9.figshare.14252053.v1
title: Additional file 4 of The Rice GLYCINE-RICH PROTEIN 3 Confers Drought Tolerance by Regulating mRNA Stability of ROS Scavenging-Related Genes

description: Additional file 4: Table S4. List of up- and down-regulated genes in OsGRP3KD transgenic plants compared to non-transgenic plants
DOI: 10.6084/m9.figshare.14252053
title: Additional file 4 of The Rice GLYCINE-RICH PROTEIN 3 Confers Drought Tolerance by Regulating mRNA Stability of ROS Scavenging-Related Genes

description: Additional file 4: Table S4. List of up- and down-regulated genes in OsGRP3KD transgenic plants compared to non-transgenic plants
DOI: 10.6084/m9.figshare.14252050.v1
title: Additional file 3 of The Rice GLYCINE-RICH PROTEIN 3 Confers Drought Tolerance by Regulating mRNA Stability of ROS Scavenging-Related Genes

description: Additional file 3: Table S3. Up-regulated genes in OsGRP3OE transgenic rice plants in comparison with non-transgenic plants