cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25780054.v1
title: The complete chloroplast genome of <i>Durio zibethinus</i> L. cultivar Ri6 (Helicteroideae, Malvaceae)

description: Durian, a member of the Malvaceae family, is famous for its delicious fruits, which have strong scents and are rich in nutrients. In this study, we sequenced and characterized the complete chloroplast genome of <i>Durio zibethinus</i> L. 1774 cultivar Ri6, a popular durian cultivar in Vietnam, using the Illumina Hiseq platform. The results showed a circular chloroplast genome composed of a large single copy of 96,115 bp, a small single copy of 20,819 bp, and two inverted repeat regions of 24,185 bp. This genome consisted of 79 protein-coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. The overall GC content of this genome was 35.7%. Phylogenetic analysis inferred from 78 protein-coding regions revealed monophyly of <i>Durio</i> species and a close relationship between <i>D. zibethinus</i> cultivar Ri6 and cultivar Mongthong. This study provides essential information for further studies examining genetic population, breedings, and species identification among <i>Durio</i> taxa and cultivars.
DOI: 10.6084/m9.figshare.25780054
title: The complete chloroplast genome of <i>Durio zibethinus</i> L. cultivar Ri6 (Helicteroideae, Malvaceae)

description: Durian, a member of the Malvaceae family, is famous for its delicious fruits, which have strong scents and are rich in nutrients. In this study, we sequenced and characterized the complete chloroplast genome of <i>Durio zibethinus</i> L. 1774 cultivar Ri6, a popular durian cultivar in Vietnam, using the Illumina Hiseq platform. The results showed a circular chloroplast genome composed of a large single copy of 96,115 bp, a small single copy of 20,819 bp, and two inverted repeat regions of 24,185 bp. This genome consisted of 79 protein-coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. The overall GC content of this genome was 35.7%. Phylogenetic analysis inferred from 78 protein-coding regions revealed monophyly of <i>Durio</i> species and a close relationship between <i>D. zibethinus</i> cultivar Ri6 and cultivar Mongthong. This study provides essential information for further studies examining genetic population, breedings, and species identification among <i>Durio</i> taxa and cultivars.
DOI: 10.6084/m9.figshare.25886265.v1
title: The complete chloroplast genome of <i>Illicium simonsii</i> Maxim. (Illiciaceae), a species with important medicinal properties

description: <i>Illicium simonsii</i> Maxim (1888) is a medicinal species of the genus <i>Illicium</i> in the Illiciaceae family. It is commonly used to cure gastro-frigid vomiting, cystic hernia, gas pains in the chest, and scabies as folk medicine. To utilize its resources efficiently, the complete chloroplast genome of <i>I. simonsii</i> was sequenced, assembled, and annotated by using high-throughput sequencing data. The complete chloroplast genome was 143,038 bp in length, with a large single-copy region (LSC) of 101,094 bp, a short single-copy region (SSC) of 20,070 bp, and a pair of inverted repeats (IRs) of 21,874 bp. A total of 113 genes were annotated, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic tree exhibited that <i>I. simonsii and Illicium burmanicum</i> form a sister group, and were nested in the monophyletic clade of the <i>Illicium</i> genus.
DOI: 10.6084/m9.figshare.25736018
title: The complete chloroplast genome sequence of leibnitzia anandria (linnaeus) turczaninow

description: Leibnitzia anandria is a perennial herbaceous plant with medicinal properties, and the entire plant can be used in traditional medicine. Leibnitzia anandria was once classified under the genus Gerbera Cass., but was reclassified under Leibnitzia Cass. recently. In this study, using the GeneLab M sequencing technology of the Genemind platform, we have sequenced, assembled, and analyzed the complete chloroplast genome of Leibnitzia anandria for the first time. The genome is 154168 bp in length, consisting of a large single-copy region(LSC, 80166 bp), a small single-copy region(SSC, 18202 bp), and a pair of inverted repeat sequences(IR, 27900 bp). We have predicted and annotated a total of 133 genes, including 88 protein-coding genes, 37 tRNA-coding genes, and 8 rRNA-coding genes. The results of the phylogenetic analysis indicate that Leibnitzia anandria and Leibnitzia nepalensis, as well as the closely related Gerbera plant, clustered into a separate clade, rather than grouping together with the other plants belonging to the tribe Mutisieae. This study provides new information for the phylogeny research of Leibnitzia anandria, contributing to a better understanding of its taxonomy and evolution.
DOI: 10.6084/m9.figshare.25736018.v1
title: The complete chloroplast genome sequence of leibnitzia anandria (linnaeus) turczaninow

description: Leibnitzia anandria is a perennial herbaceous plant with medicinal properties, and the entire plant can be used in traditional medicine. Leibnitzia anandria was once classified under the genus Gerbera Cass., but was reclassified under Leibnitzia Cass. recently. In this study, using the GeneLab M sequencing technology of the Genemind platform, we have sequenced, assembled, and analyzed the complete chloroplast genome of Leibnitzia anandria for the first time. The genome is 154168 bp in length, consisting of a large single-copy region(LSC, 80166 bp), a small single-copy region(SSC, 18202 bp), and a pair of inverted repeat sequences(IR, 27900 bp). We have predicted and annotated a total of 133 genes, including 88 protein-coding genes, 37 tRNA-coding genes, and 8 rRNA-coding genes. The results of the phylogenetic analysis indicate that Leibnitzia anandria and Leibnitzia nepalensis, as well as the closely related Gerbera plant, clustered into a separate clade, rather than grouping together with the other plants belonging to the tribe Mutisieae. This study provides new information for the phylogeny research of Leibnitzia anandria, contributing to a better understanding of its taxonomy and evolution.
DOI: 10.6084/m9.figshare.25771304.v1
title: The mitochondrial genome of an important edible insect species, the African palm weevil (<i>Rhynchophorus phoenicis</i>)

description: The African palm weevil (<i>Rhynchophorus phoenicis</i>) is a species of high economic importance in sub-Saharan Africa, both as a culturally traditional edible insect and as an agricultural pest. Here we provide a <i>de novo</i> assembly and annotation for the mitochondrial genome of this species from whole-genome sequence data. The mitogenome was AT-rich and 17,161bp in length, containing 13 protein-coding, 22 transfer RNA, and two ribosomal RNA genes. Phylogenetic reconstruction showed the African palm weevil to cluster within the genus <i>Rhynchophorus</i> and the weevil tribe Rhynchophorini. This mitogenome will be important for future genetic research into this emerging edible insect species.
DOI: 10.6084/m9.figshare.25886265
title: The complete chloroplast genome of <i>Illicium simonsii</i> Maxim. (Illiciaceae), a species with important medicinal properties

description: <i>Illicium simonsii</i> Maxim (1888) is a medicinal species of the genus <i>Illicium</i> in the Illiciaceae family. It is commonly used to cure gastro-frigid vomiting, cystic hernia, gas pains in the chest, and scabies as folk medicine. To utilize its resources efficiently, the complete chloroplast genome of <i>I. simonsii</i> was sequenced, assembled, and annotated by using high-throughput sequencing data. The complete chloroplast genome was 143,038 bp in length, with a large single-copy region (LSC) of 101,094 bp, a short single-copy region (SSC) of 20,070 bp, and a pair of inverted repeats (IRs) of 21,874 bp. A total of 113 genes were annotated, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic tree exhibited that <i>I. simonsii and Illicium burmanicum</i> form a sister group, and were nested in the monophyletic clade of the <i>Illicium</i> genus.
DOI: 10.6084/m9.figshare.25771304
title: The mitochondrial genome of an important edible insect species, the African palm weevil (<i>Rhynchophorus phoenicis</i>)

description: The African palm weevil (<i>Rhynchophorus phoenicis</i>) is a species of high economic importance in sub-Saharan Africa, both as a culturally traditional edible insect and as an agricultural pest. Here we provide a <i>de novo</i> assembly and annotation for the mitochondrial genome of this species from whole-genome sequence data. The mitogenome was AT-rich and 17,161bp in length, containing 13 protein-coding, 22 transfer RNA, and two ribosomal RNA genes. Phylogenetic reconstruction showed the African palm weevil to cluster within the genus <i>Rhynchophorus</i> and the weevil tribe Rhynchophorini. This mitogenome will be important for future genetic research into this emerging edible insect species.
DOI: 10.6084/m9.figshare.25845876
title: The complete chloroplast genome sequence of <i>Hydrocotyle vulgaris</i> L. (Araliaceae)

description: <i>Hydrocotyle vulgaris</i> is a perennial wetland clonal plant in the Araliaceae family, which was introduced to China as an ornamental plant in the 1990s. Although <i>H. vulgaris</i> is now considered a potential invasiveness species in China, it also plays a significant role in the remediation of water pollution. Here, we reported its complete chloroplast genome and analyzed the basic characteristics. The chloroplast genome was 153,165 bp in length, including a pair of inverted repeat (IR) regions of 25,072 bp separated by a large single-copy (LSC) region of 84,291 bp and a small single-copy (SSC) region of 18,730 bp. The <i>H. vulgaris</i> chloroplast genome contained 132 predicted genes, and its overall GC content was 37.60%. Phylogenetic analysis revealed that <i>H. vulgaris</i> was closely related to <i>H. verticillata</i>. The <i>H. vulgaris</i> chloroplast genome presented in this study will lay a foundation for further genetic and genomic studies of the genus <i>Hydrocotyle</i>.
DOI: 10.6084/m9.figshare.25845876.v1
title: The complete chloroplast genome sequence of <i>Hydrocotyle vulgaris</i> L. (Araliaceae)

description: <i>Hydrocotyle vulgaris</i> is a perennial wetland clonal plant in the Araliaceae family, which was introduced to China as an ornamental plant in the 1990s. Although <i>H. vulgaris</i> is now considered a potential invasiveness species in China, it also plays a significant role in the remediation of water pollution. Here, we reported its complete chloroplast genome and analyzed the basic characteristics. The chloroplast genome was 153,165 bp in length, including a pair of inverted repeat (IR) regions of 25,072 bp separated by a large single-copy (LSC) region of 84,291 bp and a small single-copy (SSC) region of 18,730 bp. The <i>H. vulgaris</i> chloroplast genome contained 132 predicted genes, and its overall GC content was 37.60%. Phylogenetic analysis revealed that <i>H. vulgaris</i> was closely related to <i>H. verticillata</i>. The <i>H. vulgaris</i> chloroplast genome presented in this study will lay a foundation for further genetic and genomic studies of the genus <i>Hydrocotyle</i>.
DOI: 10.6084/m9.figshare.25858242
title: The complete chloroplast genome sequence of <i>Isoetes baodongii</i> (Isoetaceae)

description: <i>Isoetes baodongii</i> is a diploid species of Isoetaceae distributed in low altitude area, its megaspore ornamentation is similar to tetraploid species <i>I. sinensis</i>. We collected leaf material of <i>I. baodongii</i> and sequenced it for low depth whole genome sequence, then, a complete chloroplast genome of <i>I. baodongii</i> was assembled and annotated. This chloroplast genome has a circular structure of 145,494 bp in length with a GC content of 38.0%, comprising a large single copy (LSC) region of 91,860 bp, a pair of inverted repeat (IR) regions of 13,207 bp each, and a small single copy (SSC) region of 27,220 bp. 136 genes were annotated, including 84 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. A maximum likelihood phylogeny tree was reconstructed after the sequences alignment, the result showed that <i>I. baodongii</i> formed a sister clade to the one clustered by <i>I. sinensis</i>, <i>I. taiwanensis</i> and <i>I. orientalis</i>. Although the chloroplast genome structure of <i>I. baodongii</i> is extremely similar to other species distributed in China, a well-supported phylogenetic relationship was reconstructed here, these results may provide new messages for further studies on phylogeny and evolution of vascular plant on the earth.
DOI: 10.6084/m9.figshare.25858242.v1
title: The complete chloroplast genome sequence of <i>Isoetes baodongii</i> (Isoetaceae)

description: <i>Isoetes baodongii</i> is a diploid species of Isoetaceae distributed in low altitude area, its megaspore ornamentation is similar to tetraploid species <i>I. sinensis</i>. We collected leaf material of <i>I. baodongii</i> and sequenced it for low depth whole genome sequence, then, a complete chloroplast genome of <i>I. baodongii</i> was assembled and annotated. This chloroplast genome has a circular structure of 145,494 bp in length with a GC content of 38.0%, comprising a large single copy (LSC) region of 91,860 bp, a pair of inverted repeat (IR) regions of 13,207 bp each, and a small single copy (SSC) region of 27,220 bp. 136 genes were annotated, including 84 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. A maximum likelihood phylogeny tree was reconstructed after the sequences alignment, the result showed that <i>I. baodongii</i> formed a sister clade to the one clustered by <i>I. sinensis</i>, <i>I. taiwanensis</i> and <i>I. orientalis</i>. Although the chloroplast genome structure of <i>I. baodongii</i> is extremely similar to other species distributed in China, a well-supported phylogenetic relationship was reconstructed here, these results may provide new messages for further studies on phylogeny and evolution of vascular plant on the earth.
DOI: 10.6084/m9.figshare.25721278
title: The characterization of the mitochondrial genome of <i>Graptemys ouachitensis</i>

description: <i>Graptemys ouachitensis</i> (CAGLE, 1953) belongs to the <i>Graptemys</i> genus, <i>the</i> Emydidae family, and the Testudines order. This study involved sequencing the complete mitochondrial genome (mitogenome) of <i>G. ouachitensis</i> using next-generation sequencing, and analyzing the essential characteristics, and phylogenetic relationship. The results revealed that the <i>G. ouachitensis</i> mitogenome was 16,674 bp in length (A: 34.1%, C: 26.0%, G: 13.0%, T: 26.9%) and included 22 <i>tRNAs</i>, 13 protein-coding genes, two ribosomal RNA genes, and a non-coding control region (GenBank accession: NC071766). The genome composition of <i>G. ouachitensis</i> presented a slight A + T bias (61.0%) and exhibited a positive AT skew (0.118) and a negative GC skew (–0.333). A phylogenetic analysis based on the complete mitogenome indicated that the <i>G. ouachitensis</i> was more closely associated with <i>Malaclemys terrapin</i> than the other eight known Emydidae species. Thus, our findings present a novel mitogenome at the species level. This study introduces the first complete mitogenome of <i>G. ouachitensis</i>, providing valuable molecular information for phylogenetic and conservation genetics analyses of <i>G. ouachitensis</i>.
DOI: 10.6084/m9.figshare.25721278.v1
title: The characterization of the mitochondrial genome of <i>Graptemys ouachitensis</i>

description: <i>Graptemys ouachitensis</i> (CAGLE, 1953) belongs to the <i>Graptemys</i> genus, <i>the</i> Emydidae family, and the Testudines order. This study involved sequencing the complete mitochondrial genome (mitogenome) of <i>G. ouachitensis</i> using next-generation sequencing, and analyzing the essential characteristics, and phylogenetic relationship. The results revealed that the <i>G. ouachitensis</i> mitogenome was 16,674 bp in length (A: 34.1%, C: 26.0%, G: 13.0%, T: 26.9%) and included 22 <i>tRNAs</i>, 13 protein-coding genes, two ribosomal RNA genes, and a non-coding control region (GenBank accession: NC071766). The genome composition of <i>G. ouachitensis</i> presented a slight A + T bias (61.0%) and exhibited a positive AT skew (0.118) and a negative GC skew (–0.333). A phylogenetic analysis based on the complete mitogenome indicated that the <i>G. ouachitensis</i> was more closely associated with <i>Malaclemys terrapin</i> than the other eight known Emydidae species. Thus, our findings present a novel mitogenome at the species level. This study introduces the first complete mitogenome of <i>G. ouachitensis</i>, providing valuable molecular information for phylogenetic and conservation genetics analyses of <i>G. ouachitensis</i>.
DOI: 10.15468/dl.x6nxyj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is List of Invasive Alien Species of Union concern",
 "Country is one of (Belgium)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094657-240506114902167/datasets/export for details.
DOI: 10.15468/dl.dzmhnh
title: Occurrence Download

description: A dataset containing 10535 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gleichenia dicarpa R.Br.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10535 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094656-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mzp633
title: Occurrence Download

description: A dataset containing 421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Portugal",
 "TaxonKey is Hakea sericea Schrad. & J.C.Wendl."
 ]
}

 The dataset includes 421 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094659-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25403/upresearchdata.26097793
title: Adaptive data rate algorithms for LoRaWAN

description: Simulations in ns-3 were run to produce the figures submitted. For our simulations, we used up to seven gateway nodes, one network server node and between 100 and 300 end nodes in a 10 km × 10 km network, sending data packets at different time intervals. We coded our algorithms inside the ADR component code of the ns-3 LoRaWAN module. We analysed the system performance of different ADR models, namely, the standard ADR model, which we term Semtech-ADR, the ADR model implemented in the ns-3 LoRaWAN module, which we term ns-3-ADR and our proposed fuzzy logic-based ADR known as FL-ADR. We performed two different evaluations and analyses. In the first evaluation, we used 100 EDs and changed the Application Data Packet Rate to transmit 1 packet per 300 s, 600 s, 900 s, 1200 s and 1500 s. In the second evaluation, we kept the application data rate constant at 1 packet per 600 s and varied the number of EDs to 100, 150, 200, 250 and 300 and analysed the performance. The simulation was configured to simulate for 3.3 h.
DOI: 10.25403/upresearchdata.26097793.v1
title: Adaptive data rate algorithms for LoRaWAN

description: Simulations in ns-3 were run to produce the figures submitted. For our simulations, we used up to seven gateway nodes, one network server node and between 100 and 300 end nodes in a 10 km × 10 km network, sending data packets at different time intervals. We coded our algorithms inside the ADR component code of the ns-3 LoRaWAN module. We analysed the system performance of different ADR models, namely, the standard ADR model, which we term Semtech-ADR, the ADR model implemented in the ns-3 LoRaWAN module, which we term ns-3-ADR and our proposed fuzzy logic-based ADR known as FL-ADR. We performed two different evaluations and analyses. In the first evaluation, we used 100 EDs and changed the Application Data Packet Rate to transmit 1 packet per 300 s, 600 s, 900 s, 1200 s and 1500 s. In the second evaluation, we kept the application data rate constant at 1 packet per 600 s and varied the number of EDs to 100, 150, 200, 250 and 300 and analysed the performance. The simulation was configured to simulate for 3.3 h.
DOI: 10.15468/dl.5r5ng4
title: Occurrence Download

description: A dataset containing 1422 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Euonymus macropterus Rupr.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1422 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094660-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vyxzva
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is List of Invasive Alien Species of Union concern",
 "Country is one of (Belgium)",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094661-240506114902167/datasets/export for details.
DOI: 10.48597/4vqq-3874
title: Ozone at Esrange

description: Measurement of Ozone at Esrange
DOI: 10.48597/yesc-myz7
title: Measurement of Ozone at Esrange

description: Measurement of Ozone at Esrange
DOI: 10.15468/dl.dtd6vg
title: Occurrence Download

description: A dataset containing 1412 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Euonymus maackii Rupr.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1412 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094662-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xftj5d
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Geometry POLYGON((-3.00807 54.67033,-3.01122 54.67038,-3.01065 54.66853,-3.00751 54.66832,-3.00807 54.67033))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (April, May)",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidoptera",
 "Year 1990-2024"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094663-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26105638
title: SPSS ANALYSIS OF SOIL

description: SPSS data soil PH and moisture content
DOI: 10.6084/m9.figshare.26105638.v1
title: SPSS ANALYSIS OF SOIL

description: SPSS data soil PH and moisture content
DOI: 10.15468/dl.yxz66s
title: Occurrence Download

description: A dataset containing 37274 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Insectivorous bat activity dataset across different land-use types in the islands of São Tomé and Príncipe"
 ]
}

 The dataset includes 37274 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094664-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.