cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.83nj1.2/18.2
title: Weekly weighted covariates aggregated at department level

description: Time series of weekly covariates, weighted by population, aggregated at department level. This .zip file contains eight tables (in .csv format) of time series for aegypti population, maximum temperature, mean temperature, minimum temperature, NDVI MODIS Aqua, NDIV MODIS Terra, precipitation and relative humidity.
DOI: 10.5061/dryad.83nj1.2/19.2
title: Weekly weighted covariates aggregated at national level

description: Time series of weekly covariates, weighted by population, aggregated at national level. This .zip file contains eight tables (in .csv format) of time series for aegypti population, maximum temperature, mean temperature, minimum temperature, NDVI MODIS Aqua, NDIV MODIS Terra, precipitation and relative humidity.
DOI: 10.5061/dryad.83nj1.2/20.2
title: Fixed time covariates aggregated at all levels

description: Fixed time covariates aggregated at municipality, department and national levels (in .csv format). This .zip file contains three tables (in .csv format), one for each level, with data on population, births, urban population, mean gross cell product and mean travel time.
DOI: 10.5061/dryad.83nj1.2/21.2
title: Spatial time series movies ZIKV cases and environmental drivers.

description: Spatial time series movies ZIKV cases and environmental drivers at weekly time step and municipality level (in .MP4 format).  This file includes nine movies: weekly number of cases, cumulative number of cases,  average NDVI (Aqua), average NDVI (Terra), total precipitation, relative humidity, minimum temperature, mean temperature and maximum temperature.
DOI: 10.5061/dryad.8k821ds/1
title: Alignment Data

description: Contains reference alignments and BAli-Phy Posterior Decoding alignments for all data referred to in the manuscript.
DOI: 10.5061/dryad.8k821ds/2
title: S2-supplementary_information_spreadsheet_v5_resubmission

description: An excel spreadsheet with all of the detailed results of the study described in the paper.
DOI: 10.5061/dryad.8k821ds/3
title: S1 - Supplement

description: Contains supplementary tables and exhibits referred to in the manuscript.
DOI: 10.5061/dryad.8ss7096/1
title: Harding et al. data

description: Data collected in the field from Lake Malawi and includes three corresponding excel tabs for the respective elements of the manuscript (Single lower-disturbance site, lower-disturbance sites, higher-disturbance sites).
DOI: 10.5061/dryad.9j5q334/1
title: Maternal effects experiments

description: Data from all 5 maternal effects experiments. eid = experiment number (1-5), iid = individual identity, gid = genotype identity, trt = treatment (C = control, CC = control/control, CM = control/full, E = early, EC = early/control, EM = early/full, F = full, FC = full/control, FM = full/full, L=late, LC = late/control, LM = late/full, M = full, MC = full/control, MM = full/full) mid = mother identity, ar1 = age at first brood, ar2 = age at second brood, ar3 = age at third brood, bs1 = size first brood, bs2 = size second brood, bs3 = size third brood, txp = toxicity as the proportion of cyanobacteria in the food (measured as the fraction of total organic carbon weight per liter medium), txc = toxicity as the concentration of cyanobacteria (measured as mg of organic carbon per liter of medium), txm = toxicity as the concentration of microcystin (ug/L), gr2 = fitness estimate after 2 broods, gr3 = fitness estimate after 3 broods.
DOI: 10.5061/dryad.9j5q334/2
title: Data from the meta-analysis

description: Data collected from 6 studies and our 5 maternal effects experiments. study = study identity (see figure 4, mean text), species = species of Daphnia, clone = identity of clone line, tox.prop = toxicity as the proportion of cyanobacteria in the food (measured as the fraction of total organic carbon weight per liter medium), tox.conC = toxicity as the concentration of cyanobacteria (measured as mg of organic carbon per liter of medium), tox.conM = toxicity as the concentration of microcystin (ug/L), trait = description of trait, tr.cat = trait category (see figure 4 in main text), stat.type = type of statistic (t = t-test, z = z-test, OD = odd ratio), stat = value of statistic, df = degrees of freedom, direction = direction of effect (C = offspring from control mothers have higher mean, M = offspring from exposed mothers have higher mean), mnC = mean offspring control mothers, sdC = standard deviation offspring control mothers, seC = standard error offspring control mothers, nC = sample size offspring from control mothers, mnM = mean offspring exposed mothers, sdM = standard deviation offspring exposed mothers, seM = standard error offspring exposed mothers, nM = sample size offspring from exposed mothers, pooled.sd = pooled standard deviation, cohens.d = Cohen’s d, var.cd = variance for Cohen’s d, hedges.g = Hedges’ g, var.hg = variance for Hedges’ g, effect = effect size (Hedges’ g corrected for the direction of the effect), sid = study identity number, cid = clone identity number, tid = trait class identity number.
DOI: 10.5061/dryad.9j5q334/3
title: Egg sizes - data for mothers

description: Data of the mothers for which egg sizes were measured. iid = individual identity of the mother, tox = treatment of the mother (0 = non-toxic, 1 = toxic), gid = genotype identity, avt = z-score for the average time interval between the first and second, and second and third brood, abs = z-score for the average size of the second and third brood.
DOI: 10.5061/dryad.9j5q334/4
title: Egg sizes - egg size measurements

description: Data of the egg size measurements. iid = individual identity of the mother, mid = row number of the mother in the data file with mothers, are = area of the egg (mm^2), per = perimeter of egg (mm), mxr = semi-major axis (mm), mnr = semi-minor axis (mm).
DOI: 10.5061/dryad.b5s2hn4/3
title: SNP genotypes

description: SNP genotype data for the 363 apple accessions. The accession number is the first number in each row.
DOI: 10.5061/dryad.b5s2hn4/4
title: SSR-data

description: Data from 15 SSR loci for the 484 Malus accessions included in Larsen et al. 2017 of which a subset in used in the present study
DOI: 10.5061/dryad.b5s2hn4/5
title: ReadMe_file
DOI: 10.5061/dryad.bm44n75/1
title: Sequencing results of TraPDS from regenerated shoots

description: Genomic DNAs from regenerated shoots of Tragopogon porrifolius and Tragopogon mirus were extracted. Primers TraPDS-F1 and TraPDS-R2 were used to amplify the fragment covering the CRISPR/Cas9 target sites within the TraPDS gene. PCR amplicons were sequenced using primer TraPDS-F1.
DOI: 10.5061/dryad.bm44n75/2
title: Shared_Tragopogon_reads_for_consensus_cDNA_assembly_of_TraPDS

description: BLAST search against the T. dubius transcriptome identified 17, 21, and 19 full-length cDNA sequences of T. dubius with high similarity and coverage to PDS cDNA from Vitis vinifera, Helianthus annuus, and Gerbera hybrida, respectively. Sixteen of these sequences were shared among the three species. De novo assembly of these 16 sequences generated a consensus cDNA of TraPDS gene.
DOI: 10.5061/dryad.bm44n75/3
title: Consensus_cDNA_TraPDS

description: De novo assembly of 16 cDNA sequences from T. dubius generated a consensus cDNA of TraPDS with the length of 2,147 bases.
DOI: 10.5061/dryad.c5v81v1/2
title: Chaetodon Body Condition Along a Depth Gradient

description: Body Condition metrics for two Chaetodon species along a coral reef depth gradient.
DOI: 10.5061/dryad.dv3vg56/1
title: data_Schermer_et_al
DOI: 10.5061/dryad.g12p0j2/1
title: Data File Key

description: Key for all data files
DOI: 10.5061/dryad.g886d9v/1
title: Subalusky_2018_mara_biochemical_oxygen_demand

description: This file contains data on biochemical oxygen demand measured over 5 days in 310 ml bottles in water samples collected from the water column at our three primary study sites.
DOI: 10.5061/dryad.g886d9v/2
title: Subalusky_2018_mara_experimental_stream_tiles

description: This file contains data on the biofilm growth and production of indvidual ceramic tiles placed in experimental streams and destructively sampled weekly to measure biofilm growth over time.
DOI: 10.5061/dryad.g886d9v/3
title: Subalusky_2018_mara_hippo_feces_decomp_litterbags

description: This file contains data on decomposition rates of hippo feces in litterbags in the Mara River.
DOI: 10.5061/dryad.g886d9v/4
title: Subalusky_2018_mara_nutrient_dissolution_chambers

description: This file contains data on nutrient dissolution of hippo feces and wildebeest tissue measured using 5L chamber experiments filled with river water.
DOI: 10.5061/dryad.gq156st/1
title: data - Borges et al. 2018

description: CSV file with species, survivorship, and trait data for all plants in our experiment.
DOI: 10.5061/dryad.h55p1q5/2
title: modern and ancient dog mt sequence (HVR1)
DOI: 10.5061/dryad.hm5vs13/1
title: Arachis_ipaensis_Genome_V1.0.tar

description: Arachis_ipaensis_Genome_V1.0.tar
DOI: 10.5061/dryad.j1344c7/1
title: PollenDispersal_SeedLevel

description: File lists identities of sires (as per Cervus paternity analyses) of several Miconia affinis seeds within individual fruits and the dispersal distance traveled by specific pollinator species between the sires and the mother trees where they deposited pollen.
DOI: 10.5061/dryad.j1344c7/2
title: PollenDispersal_MotherLevel

description: File includes data on study system independent variables per mother tree (1 fruit per mother tree), our calculations of the standard deviation, mean and maximum pollen dispersal distances, as well as our calculations of sire diversity and evenness per multi-paternal fruit.
DOI: 10.5061/dryad.j64s5rn/1
title: Species collection records, and average altitude
DOI: 10.5061/dryad.j886dg0/2
title: Spider web and body size information

description: This file contains trait information for all spiders included in the Journal of Animal Ecology paper. See README for details.
DOI: 10.5061/dryad.j886dg0/3
title: Landscape-level urbanization

description: This file contains levels of urbanization for all 3 by 3 km landscapes included in the Journal of Animal Ecology paper. See README for details.
DOI: 10.5061/dryad.j886dg0/4
title: Spider population density

description: This file contains spider population density (females caught per 200*200 m site) for all sites included in the Journal of Animal Ecology paper. See README for details.
DOI: 10.5061/dryad.m9j79jr/1
title: Brunbjerg et al. 2018 Methods in Ecology and Evolution

description: This tab separated data file contains all variables used in the paper.
DOI: 10.5061/dryad.r36sg/1
title: Ion Torrent fastq data for dolphin DQA and DQB

description: The MHC class II genes, DQA and DQB, were PCR amplified in 95 bottlenose dolphins from Florida Atlantic coastal and estuarine habitats. The proximal promoter and peptide binding regions from both genes were amplified with barcoded primers and products were ~350 bp. Samples were pooled and sequenced on Ion Torrent PGM using a 318 chip. See the README file for barcode and sample information.
DOI: 10.5061/dryad.tn0250c/1
title: Supplemental Material

description: Supplemental data of the study.
DOI: 10.5061/dryad.000bq75/1
title: Spiricopia VAXML

description: VAXML / STL dataset for Spiricopia holotype. See www.spiers-software.org for VAXML specification and free VAXML viewer
DOI: 10.5061/dryad.09h8p8d/1
title: Savanna tree seedling responses to fertilisation - biomass, root carbohydrate and nodulation

description: This dataset is from an experiment which assessed the effect of nitrogen and phosphorus fertilisation on seedlings of multiple N-fixing and non-N-fixing savanna tree species. The zip folder contains three csv files with data on seedling biomass, root storage carbohydrate and root nodule mass responses to nutrient addition.
DOI: 10.5061/dryad.1mf7q9q/2
title: DNA sequences of 93 Whelks for mtDNA gene COX-1

description: Partial DNA sequence of the mitochondrial COX-1 gene obtained from 93 Buccinulum vittatum-complex snails collected from New Zealand
DOI: 10.5061/dryad.1mf7q9q/3
title: Nuclear genetic variation for marine snails Buccinulum vittatum

description: Nuclear data - Single nucleotide polymorphisms from ddRAD-seq. Snails Buccinulum vittatum-complex genetic variation formatted for population genetic study
DOI: 10.5061/dryad.2mh70m2/1
title: 1_T_iboga_1.fq.gz

description: These are illumina reads. The files T_iboga_1.fq.gz.001 and T_iboga_1.fq.gz.002 must be joined into a single file before decompressing. Join the files using the following command indicated for your operating system. Linux/Mac OS X: cat T_iboga_1.fq.gz.* &gt; T_iboga_1.fq.gz  Windows: copy /b T_iboga_1.fq.gz.001 + T_iboga_1.fq.gz.002 T_iboga_1.fq.gz
DOI: 10.5061/dryad.2mh70m2/2
title: 2_T_iboga_1.fq.gz

description: The files T_iboga_1.fq.gz.001 and T_iboga_1.fq.gz.002 must be joined into a single file before decompressing. Join the files using the following command indicated for your operating system. Linux/Mac OS X: cat T_iboga_1.fq.gz.* &gt; T_iboga_1.fq.gz Windows: copy /b T_iboga_1.fq.gz.001 + T_iboga_1.fq.gz.002 T_iboga_1.fq.gz
DOI: 10.5061/dryad.2mh70m2/3
title: T_iboga_2.fq.gz

description: The files T_iboga_2.fq.gz.001 and T_iboga_2.fq.gz.002 must be joined into a single file before decompressing. Join the files using the following command indicated for your operating system. Linux/Mac OS X: cat T_iboga_2.fq.gz.* &gt; T_iboga_2.fq.gz  Windows: copy /b T_iboga_2.fq.gz.001 + T_iboga_2.fq.gz.002 T_iboga_2.fq.gz
DOI: 10.5061/dryad.44sk691.1/1.1
title: strain data

description: Strain data collected from semilandmarks
DOI: 10.5061/dryad.44sk691.1/2.1
title: landmarks

description: Raw shape data
DOI: 10.5061/dryad.44sk691.1/3.1
title: Specimen details

description: Details on specimens used in morphometric analyses
DOI: 10.5061/dryad.44sk691.1/4.1
title: phylogenetic_tree

description: Phylogenetic tree for morphometric analyses
DOI: 10.5061/dryad.56d7540/1
title: Pale L. simulans Experiments 1 and 2 Data and Analysis

description: This zip folder contains all the raw and processed data from Experiments 1 and 2 (in .xls format) and the associated .csv files created from these which were used for analysis in R statiscical software along with the .R files containing the code for the analysis of each of these files. Two README files are included, one for each experiment. These contain information about what each file contains and explanations for what data each of the tabs and columns contain.
DOI: 10.5061/dryad.5cm7088/1
title: Raw comma separated data for experiment

description: population size and bioassay data for experimental mesocosms.  See readme file for more details on column heading and example analysis code.
DOI: 10.5061/dryad.658433g/2
title: Original data supplement

description: Excel file containing the original data for all individuals
DOI: 10.5061/dryad.66mb8nj/10
title: trnLF.con50.MrBayes

description: Bayesian 50% majority-rule consensus trees from 6002 trees generated by Bayesian inference with MrBayes for tribe Halimolobeae and the trnL-F dataset.
DOI: 10.5061/dryad.66mb8nj/2
title: Figure S1

description: FIGURE. S1. Bayesian 50% majority-rule consensus trees from 6002 trees generated by Bayesian inference with MrBayes A. ITS dataset. B. trnL-F dataset. C. Concatenated ITS + trnL-F dataset. Circles on nodes indicate Bayesian posterior probability. The white arrows indicate phylogenetic position of Pennellia yalaensis. Units of branch length are proportional to nucleotide substitutions per site.
DOI: 10.5061/dryad.66mb8nj/3
title: ITS_alignment

description: ITS alignment of tribe Halimolobeae dataset.
DOI: 10.5061/dryad.66mb8nj/4
title: trnLF_alignment

description: trnL-F alignment of tribe Halimolobeae dataset.
DOI: 10.5061/dryad.66mb8nj/5
title: ITS_RAxML_ML_bestTree

description: Maximum likelihood tree for tribe Halimolobeae generated with RAxML using the ITS dataset.
DOI: 10.5061/dryad.66mb8nj/6
title: trnLF.RAxML_ML_bestTree

description: Maximum likelihood tree for tribe Halimolobeae generated with RAxML using the trnL-F dataset.
DOI: 10.5061/dryad.66mb8nj/7
title: ITS+trnLF_RAxML_ML_bestTree

description: Maximum likelihood tree for tribe Halimolobeae generated with RAxML and using the concatenated ITS+ trnL-F datasets.
DOI: 10.5061/dryad.66mb8nj/8
title: ITS.con50.MrBayes

description: Bayesian 50% majority-rule consensus trees from 6002 trees generated by Bayesian inference with MrBayes for tribe Halimolobeae and the ITS dataset.
DOI: 10.5061/dryad.66mb8nj/9
title: ITS_TOTAL.trees.MrBayes

description: 6002 trees generated by Bayesian inference with MrBayes for tribe Halimolobeae and the ITS dataset.
DOI: 10.5061/dryad.74ms329/1
title: Material_and_Methods

description: Supplementary Material and Methods, Datasets, Scripts, and Results.
DOI: 10.5061/dryad.83nj1.1/21.1
title: Spatial time series movies ZIKV cases and environmental drivers.

description: Spatial time series movies ZIKV cases and environmental drivers at weekly time step and municipality level (in .MP4 format).  This file includes nine movies: weekly number of cases, cumulative number of cases,  average NDVI (Aqua), average NDVI (Terra), total precipitation, relative humidity, minimum temperature, mean temperature and maximum temperature.
DOI: 10.5061/dryad.8p97m88/1
title: raw qPCR results from skin

description: qPCR values per individual from skin of black and red color morphs
DOI: 10.5061/dryad.8p97m88/2
title: raw qPCR results from testes

description: qPCR values per individual from testes of black and red color morphs
DOI: 10.5061/dryad.8p97m88/3
title: transcript isoforms

description: Alternative transcript isoforms of MOCS2 and FST expressed in the regenerating mask skin.
DOI: 10.5061/dryad.9f646f2/1
title: revised_BWdiff_RecurrentIS_CaseFatality_Suppl

description: Supplementary Tables and Figure (Tables e-1-7, Figure e-1)
DOI: 10.5061/dryad.9j5q334/5
title: Egg sizes - fitness estimates

description: Data of the fitness estimates for offspring of the third brood of the mothers. iid = individual identity of the mother, mid = row number of the mother in the data file with mothers, fit = fitness estimate (replacement rate), tox = treatment of the offspring for which fitness is measured (0 = non-toxic, 1 = toxic).
DOI: 10.5061/dryad.bm44n75/4
title: Consensus_genomic_sequence_TraPDS

description: PCR products of two pairs of primers (TraPDS-F1 and TraPDS-R1; TraPDS-F2 and TraPDS-R2) from T. dubius and T. porrifolius were de novo assembled, and a consensus genomic sequence was obtained with a length of 1,631 bases.
DOI: 10.5061/dryad.bp11pv2/1
title: SpermSelection_DataSheets

description: Data file with all data necessary to replicate the analyses described in the associated manuscript. The manuscript describes an experimental assay investigating whether fertilization of three-spined stickleback eggs depends on MHC haplotypes of egg and sperm. The data contains information on fertilization success, sequence divergence among gamete MHC haplotypes and other parameters necessary for the analyses. Fertilizations were done in vitro.
DOI: 10.5061/dryad.bt4q242/1
title: HBV_Genotype_A_sequence alignment

description: HBV genotype A full-length genomic sequence alignment after the exclusion of multiple sequences per patient. Sequence identifiers include accesion number of geographic area of sampling
DOI: 10.5061/dryad.bt4q242/2
title: HBV_Genotype D_sequence_alignment

description: HBV genotype D full-length genomic sequence alignment after the exclusion of multiple sequences per patient. Sequence identifiers include accesion number of geographic area of sampling
DOI: 10.5061/dryad.g12p0j2/2
title: Moatt et al Script

description: R script for all analyses
DOI: 10.5061/dryad.g12p0j2/3
title: Moatt_et_al_Data_S1

description: Mortality Data
DOI: 10.5061/dryad.g12p0j2/4
title: Moatt_et_al_Data_S2

description: Mortality prediction Males - Period 1
DOI: 10.5061/dryad.g12p0j2/5
title: Moatt_et_al_Data_S2B

description: Mortality prediction Males - Period 5
DOI: 10.5061/dryad.g12p0j2/6
title: Moatt_et_al_Data_S3

description: Mortality prediction Females - Period 1
DOI: 10.5061/dryad.g12p0j2/7
title: Moatt_et_al_Data_S4

description: Mortality prediction Females - Period 5
DOI: 10.5061/dryad.g12p0j2/8
title: Moatt_et_al_Data_S5

description: Courtship Data
DOI: 10.5061/dryad.g12p0j2/9
title: Moatt_et_al_Data_S6

description: Egg Data
DOI: 10.5061/dryad.g886d9v/10
title: README

description: A text file describing each data file the data package.
DOI: 10.5061/dryad.g886d9v/5
title: Subalusky_2018_mara_nutrient_limitation_assays

description: This file contains data on biofilm growth on nutrient-diffusing substrates, comprised of glass discs (for measurements of cholorophyll a) and cellulose sponges (for measurements of respiration) on cups of agar amended with different nutrients.
DOI: 10.5061/dryad.g886d9v/6
title: Subalusky_2018_mara_river_biofilm_alldata

description: This file contains data on the biofilm growth and production on individual ceramic tiles placed in the Mara River at our three primary study sites for 3-4 weeks at a time; these are the individual values for 4-5 tiles at each site at each sampling period. The mean values for each site and visit were used for analysis.
DOI: 10.5061/dryad.g886d9v/7
title: Subalusky_2018_mara_river_biofilm_summary_data

description: This file contains data on the mean biofilm growth and production on ceramic tiles placed in the Mara River at our three primary study sites for 3-4 weeks at a time; these are the mean values averaged for 4-5 tiles at each site at each sampling period. These are the data that were used for analysis in the paper.
DOI: 10.5061/dryad.g886d9v/8
title: Subalusky_2018_mara_river_nutrients_tenpttransect

description: This file contains data on carbon and nutrient concentrations measured along a 10 point sampling transect down the Mara River, and the mean and standard error of all C and nutrient measurements over the period of study at our three primary study sites.
DOI: 10.5061/dryad.g886d9v/9
title: Subalusky_2018_mara_river_physicochem_nutrient_data

description: This file contains data on discharge and water column parameters measured monthly at our three primary study sites in the Mara River from Jun-Aug 2011, Jul-Dec 2012, and Aug 2013-Mar 2014.
DOI: 10.5061/dryad.hr67c5p/1
title: Compressed file with all data

description: The compressed file contains six separate csv files for the tables and figures presented in this paper.
DOI: 10.5061/dryad.k5912k6/1
title: DataA1

description: Final dataset used to generate results of this publication. Note that you must take the medians for each taxon to reproduce the results.
DOI: 10.5061/dryad.k5912k6/2
title: MetadataA1
DOI: 10.5061/dryad.kj8kp94/1
title: 31OutlierSequences

description: BED file for genomic placement of mapped reads from selection experiment
DOI: 10.5061/dryad.kj8kp94/2
title: 42seqsOf49SNPs_ForMappingToGenome

description: Shared outlier sequences from selected lines.
DOI: 10.5061/dryad.kj8kp94/3
title: FloridaPop

description: Map of Florida Populations "Wild Derived"
DOI: 10.5061/dryad.m2t17cc/1
title: Grime's CSR trait data

description: Community Weighted Mean values of CSR to test the changes of the grassland community in relation to grazing and time
DOI: 10.5061/dryad.m2t17cc/2
title: Westoby's LHS trait data

description: Community Weighted Mean (log-transformed) LHS trait values to test the effect of horse grazing and time on the functional composition of grasslands
DOI: 10.5061/dryad.m2t17cc/3
title: Butterfly and Bumblebee counts in relation to plantspecies richness

description: Butterfly and Bumblebee counts and feeding and resting activities in relation to mean number of plant species per plot
DOI: 10.5061/dryad.m2t17cc/4
title: Pollinator species and behaviour in relation to treatment

description: Butterfly and Bumblebee species counts and feeding and resting activities in relation to treatment, i.e., grazed vs ungrazed conditions
DOI: 10.5061/dryad.pp1d41n/1
title: Moran et al. 2019 [Calling song]
DOI: 10.5061/dryad.pp1d41n/2
title: Moran et al. 2019 [CHCs]
DOI: 10.5061/dryad.pp1d41n/3
title: Moran et al. 2019 [Close range behaviour]