DOI: 10.5281/zenodo.7837572
title: Signed Citation of Provenance of GBIF Occurrence Downloads referenced in Chesshire et al. 2023 doi:10.1111/ecog.06584 hash://sha256/f2d8bdaec7a416a0039e9398cf07c6fa69083f64a6f22de3f252ebb5dd4fd412 hash://md5/458490528f55250ef381ba4bb6f81162

description: Chesshire et al. 2023. scientific publication [1] used and referenced three GBIF mediated occurrence download queries [2,3,4] and associated data. However, in their GBIF records indicate that the data associated with the three download queries are slated for removal at any point after 2021-08-03 . This publication explicitly references the DOIs associated with [2,3,4] and documents the provenance of their associated meta-data records. The provenance was captured using Preston [5,6], a biodiversity dataset tracker. The signed citation of this provenance publication can be derived from: <pre><code class="language-bash">preston history --remote https://zenodo.org/record/7837572/files </code></pre> <pre><code>&lt;hash://sha256/f2d8bdaec7a416a0039e9398cf07c6fa69083f64a6f22de3f252ebb5dd4fd412&gt; &lt;http://www.w3.org/ns/prov#wasDerivedFrom&gt; &lt;hash://sha256/c457565ea0cec7b0392f1271fcda08440919f03bbf29bb8df1eb926c78a972cc&gt; . &lt;urn:uuid:0659a54f-b713-4f86-a917-5be166a14110&gt; &lt;http://purl.org/pav/hasVersion&gt; &lt;hash://sha256/c457565ea0cec7b0392f1271fcda08440919f03bbf29bb8df1eb926c78a972cc&gt; .</code></pre> And their tracked content include, as obtained via <pre><code class="language-bash">preston alias --remote https://zenodo.org/record/7837572/files</code></pre> Tracked content associated with hash://sha256/c457565ea0cec7b0392f1271fcda08440919f03bbf29bb8df1eb926c78a972cc content location content relation content id https://doi.org/10.15468/dl.6cxfsw http://purl.org/pav/hasVersion hash://sha256/6b8b5f79af53dee98c3654b945389628194c9e9f0ad610852327574b3f99ff7a https://doi.org/10.15468/dl.b9rfa7 http://purl.org/pav/hasVersion hash://sha256/a74cfe8a6c6b7d2361f41cc04979c262b5fbba60c0992253ae78fe6d31f414bb https://doi.org/10.15468/dl.w2nndm http://purl.org/pav/hasVersion hash://sha256/6a587a219e78ff2674fbb54d99fed48c21b77bc46608d8f991e79ee06a547fac https://api.gbif.org/v1/occurrence/download/0182006-200613084148143 http://purl.org/pav/hasVersion hash://sha256/1c5d8a7399793a634a0dde32f3a94ccf64199f010d7f93baa422c2e1dbb98b2f https://api.gbif.org/v1/occurrence/download/0182032-200613084148143 http://purl.org/pav/hasVersion hash://sha256/23d7c875420bea71d24c1ec3ba127f91eff5b368744de14824de0fc4fc090bb2 https://api.gbif.org/v1/occurrence/download/0182076-200613084148143 http://purl.org/pav/hasVersion hash://sha256/6555d581e0ce75c77740811e547da726297d02369b149893faf531f132a2aff0 https://api.gbif.org/v1/occurrence/download/request/0182006-200613084148143.zip http://purl.org/pav/hasVersion hash://sha256/d14a14e549e3caa8965daecad6fcb0cfddd4be12fb78a495b248c380df41db9b https://api.gbif.org/v1/occurrence/download/request/0182032-200613084148143.zip http://purl.org/pav/hasVersion hash://sha256/3fc1b6491813f5d7e2d32b7c6cadb1ae60558f31a4489e23735c43bd74ed4db6 https://api.gbif.org/v1/occurrence/download/request/0182076-200613084148143.zip http://purl.org/pav/hasVersion hash://sha256/7ddea84a67329ec8eea389d09798e5b6d60d86c39b975590f117679cdbbe8e20 This data publication, and associated tracked content, can be cloned using: <pre><code class="language-bash">preston clone https://zenodo.org/record/7837572/files</code></pre> <br> Note that the original publication dated 2023-04-03 did *not* include the associated tracked data retrieved from https://api.gbif.org/v1/occurrence/download/request/0182006-200613084148143.zip, https://api.gbif.org/v1/occurrence/download/request/0182032-200613084148143.zip, https://api.gbif.org/v1/occurrence/download/request/0182076-200613084148143.zip. However, on 2023-03-17, the data associated with [2], [3], [4] were still marked for deletion in the GBIF ecosystem, two weeks after the respective DOIs were first cited in the v0.1 of this data publication. This 2023-03-17 publication includes tracked content that shows the associated data is marked for deletion, and contains the associated data archives. The example below shows a tracked versions of the metadata associated with the download request/query doi:10.15468/dl.w2nndm [4] indicates that the associated data is scheduled to be "eraseAfter" "2021-08-03T19:18:46.611+00:00". <pre><code class="language-bash">preston cat --remote https://zenodo.org/record/7837572/files hash://sha256/6555d581e0ce75c77740811e547da726297d02369b149893faf531f132a2aff0\ | jq .</code></pre> <pre><code class="language-json">{ "key": "0182076-200613084148143", "doi": "10.15468/dl.w2nndm", "license": "http://creativecommons.org/licenses/by-nc/4.0/legalcode", "request": { "predicate": { "type": "and", "predicates": [ { "type": "equals", "key": "DATASET_KEY", "value": "e05f6e7d-418e-4407-8e0f-7b8ccf21109e", "matchCase": false }, { "type": "or", "predicates": [ { "type": "equals", "key": "TAXON_KEY", "value": "4334", "matchCase": false }, { "type": "equals", "key": "TAXON_KEY", "value": "4345", "matchCase": false }, { "type": "equals", "key": "TAXON_KEY", "value": "7911", "matchCase": false }, { "type": "equals", "key": "TAXON_KEY", "value": "7908", "matchCase": false }, { "type": "equals", "key": "TAXON_KEY", "value": "7901", "matchCase": false }, { "type": "equals", "key": "TAXON_KEY", "value": "7905", "matchCase": false } ] } ] }, "sendNotification": true, "format": "DWCA", "type": "OCCURRENCE", "verbatimExtensions": [] }, "created": "2021-02-03T19:18:46.687+00:00", "modified": "2021-02-03T19:20:03.899+00:00", "eraseAfter": "2021-08-03T19:18:46.611+00:00", "status": "SUCCEEDED", "downloadLink": "https://api.gbif.org/v1/occurrence/download/request/0182076-200613084148143.zip", "size": 2624689, "totalRecords": 11654, "numberDatasets": 1 }</code></pre> <strong>References </strong> [1] Chesshire, P.R., Fischer, E.E., Dowdy, N.J., Griswold, T.L., Hughes, A.C., Orr, M.C., Ascher, J.S., Guzman, L.M., Hung, K.-L.J., Cobb, N.S. and McCabe, L.M. (2023), Completeness analysis for over 3000 United States bee species identifies persistent data gap. Ecography e06584. https://doi.org/10.1111/ecog.06584 [2] GBIF.org (3 February 2021) GBIF Occurrence Download https://doi.org/10.15468/dl.6cxfsw [3] GBIF.org (3 February 2021) GBIF Occurrence Download https://doi.org/10.15468/dl.b9rfa7 [4] GBIF.org (3 February 2021) GBIF Occurrence Download https://doi.org/10.15468/dl.w2nndm [5] MJ Elliott, JH Poelen, JAB Fortes (2020). Toward Reliable Biodiversity Dataset References. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2020.101132 [6] Elliott, M. J., Poelen, J. H., & Fortes, J. (2022, August 29, accepted with minor revisions). Signed Citations: Making Persistent and Verifiable Citations of Digital Scientific Content. https://doi.org/10.31222/osf.io/wycjn