cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22691284.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.27381246.v1
title: Transcript of Interviews.pdf

description: This qualitative study explores the experiences, perceptions, and challenges of medical trainees at the Federal University of Fronteira Sul, Chapecó, Brazil, specifically related to clinical communication in pediatric care. In-depth semi-structured interviews were conducted with 6 medical students and 6 recent graduates, who recounted their communication experiences within pediatric settings. The recorded interviews were transcribed verbatim and segmented into 2,725 sentences for inductive content analysis.
DOI: 10.6084/m9.figshare.3502730.v2
title: Assignee Details

description: This is a list of the patents, geolocations, and names of every inventor. There are 6 columns and 9.7M lines, "|" delimited; the columns are--ID: the ID of the assignee--pat: the patent publication ID.--name: the raw, undisambiguated name of this assignee on this patent.--loc: the geolocation of the assignee's address listed on this patent. --qual: the yahoo quality of the geolocation. --loctype: the division of the geolocation into high and low resolution. If you are claiming to plot data at a high resolution, do not use "low."<br>This data file was updated on 17 Nov 2018. The original datafile failed to include USPTO patents without a provided assignee address. Disambiguated assignee IDs are unchanged between versions. This error did not affect any other data file, with all patent-to-assignee links in our database still found in all_disambiguated_patents_withLocal.txt. <br>
DOI: 10.6084/m9.figshare.24921495.v1
title: Data and code for "Whole-soil warming leads to substantial soil carbon emission in an alpine grassland".

description: Data and code for "Whole-soil warming leads to substantial soil carbon emission in an alpine grassland".
DOI: 10.6084/m9.figshare.21835087.v1
title: Spectrophotometric determination of acid dissociation constants of some arylpropionic acids and arylacetic acids in acetonitrile-water binary mixtures at 25ºC

description: Abstract The acid dissociation constant of drug active compounds (arylpropionic and aryl acetic acids) were determined in acetonitrile and water binary mixtures (corresponding volume fractions of 0.40, 0.45, 0.50, and 0.55) by using a multi-wavelength spectrophotometric method. Drug active compounds, which were slightly soluble in water, were studied in these binary mixtures. The dissociation constants of drug active compounds are important in drug design studies and in any research of the biopharmaceutical and physicochemical properties of drugs. The STAR program was used for the determination of dissociation constants. The acidity constants of arylpropionic and aryl acetic acids were correlated with the Kamlet and Taft solvaatochromic parameters. Aqueous pKa values of these arylpropionic and aryl acetic acids were determined from pKa values obtained from acetonitrile and water binary mixtures with varying volume fractions. The studied drugs had a pKa value corresponding to base functional group. Results showed that the acid dissociation constant values of the drug active compounds increased with an increase in acetonitrile content in the medium.
DOI: 10.6084/m9.figshare.28533173.v1
title: Supplementary Materials

description: Supplementary Materials for <i>An Activation Likelihood Estimation Meta-Analysis of Voxel Based Morphometry studies of Chemotherapy Related Brain volume changes in Breast Cancer </i>including<i> </i>results<i>,</i> input files, custom application code, literature search results.
DOI: 10.17632/x3m2gjkhx5
title: Data for: Psycholinguistic dataset on language use in 1145 novels published in English and Dutch

description: LIWC and n-gram counts of English and Dutch novels ================================================== This dataset consists of CSV files with word counts in several corpora: - 694 English language novels from different genders and orientations - 401 bestselling Dutch language novels - 50 novels nominated for Dutch literary prizes Each corpus comes with: - LIWC counts; this file also includes the available metadata for each novel. The English data was created with LIWC 2015. The Dutch data was created with the validated translation of LIWC 2001. - Word counts (unigrams) and bigram counts per novel. All text has been converted to lowercase. Contractions are tokenized into separate tokens, e.g., can't =&gt; ca n't Two restrictions are applied: - only unigrams or bigrams that occur in at least 10 texts are retained - only the 100k most frequent are retained - Overall word counts and bigram counts; i.e., the sum across all novels. All files are encoded in UTF-8.
DOI: 10.6084/m9.figshare.13082567.v1
title: Rainfall time series for the Strzelecki Desert

description: Monthly rainfall from 2007 to 2016 was collated by accessing the Australian Bureau of Meteorology online climate database (www.bom.gov.au). Rainfall data for Sturt National Park was gathered with priority from Fort Grey (station number: 46006), although rainfall data was insufficient and primarily gathered from Cameron’s Corner (station number: 45063). Rainfall data for Strzelecki Regional Reserve was primarily gathered from Lindon Station (station number: 17115) and missing data was supplemented from Cameron’s Corner (station number: 45063).
DOI: 10.6084/m9.figshare.27909696.v2
title: raisd-ai_evaluation_dataset_severe_bottleneck_10K

description: Dataset with severe bottleneck used for the evaluation of RAiSD-AI software.The commands to generate MS files are:train/neutral.ms: ./msdir/ms 128 10000 -t 2000 -r 2000 2000 -eN .01000000000000000000 0.005 -eN .01200000000000000000 125630 17962 31422train/selsweep.ms: ./msseldir/mssel 128 10000 0 128 ./trajectory_files/trajectory48.txt 1000 -t 2000 -r 2000 2000 -eN .01000000000000000000 0.005 -eN .01200000000000000000 1 25630 17962 31422test/neutral.ms: ./msdir/ms 128 1000 -t 2000 -r 2000 2000 -eN .01000000000000000000 0.005 -eN .01200000000000000000 1 3380 19597 12002test/selsweep.ms: ./msseldir/mssel 128 1000 0 128 ./trajectory_files/trajectory48.txt 1000 -t 2000 -r 2000 2000 -eN .01000000000000000000 0.005 -eN .01200000000000000000 1 3380 19597 12002<br>
DOI: 10.6084/m9.figshare.9272798.v1
title: EC9_B60.nwb

description: The enclosed data is collected using a high-density 256-channel electrocorticography array implanted in a human patient during treatment for epilepsy. The subjects are reading aloud consonant-vowel syllables from a list. The data was collected by Dr. Edward Chang at the University of California, San Francisco, and curated by Ben Dichter.<br>Data is organized by subject ID, and each file is a continuous recording session in Neurodata Without Borders: Neurophysiology (NWB:N) 2.0 format. Voltage traces are included for each of the recorded 256 channels. Microphone signal was recorded at the time but is removed for HIPAA compliance. Detailed hand-marked annotations are provided which mark what syllable was said, and the times of the start, consonant-vowel transition, and end of each syllable. A rest-period time is also included when the subject was silent, which can be used as a baseline. Hand-marked anatomical labels are included for electrodes in the relevant brain regions. All dates have been removed for HIPAA compliance and replaced with Jan 1, 1900.
DOI: 10.6084/m9.figshare.28366046.v1
title: <b>Coordinated variations in leaf and root biogeochemical niches</b>

description: We investigated the relationships between the elemental compositions of leaves and roots, phylogeny, and environmental variables, as well as the connection between leaf and root BN. We analyzed the concentrations of carbon, nitrogen, phosphorus, potassium, calcium, and magnesium in the leaves and roots of 12,394 individuals from 1,238 species.
DOI: 10.17632/8ryh8v4pry
title: Hazardous materials of marine debris, and their pollution indices in the beaches of Kanyakumari, the Southern coast of India 

description: Marine debris and marine plastic debris pollution have become an emerging threat to the Indian coast. The main purpose of this study is to assess the marine debris and associated pollution indices of Hazardous Anthropogenic Litter Index (HALI), Clean-Coast Index (CCI), and Plastic abundance Index (PAI) along the beaches of Kanyakumari, the Southern coast of India. A total of 11439 marine debris (the average density of 6.71 items/m2) were collected and classified into 33 groups (9 marine debris types) along the seven beaches of the Kanyakumari. From the results, plastics (65.08%) were the most abundant items followed by foam (21.93%), cloths (4.59%), rubber (3.09%), papers (2.26%), glass (2.16%), metal (0.38%), wood (0.26%), and others (0.26%). From the result, the average value (27.24) of CCI indicates that all beaches are “Extremely dirty”, however, PAI average value (4.37) indicates “High abundance”, and HALI allows categorization of the study area as “II”. The types of plastics relating to the study area refer to a combination of sources, the most common of which are dumping and direct beach activity. These findings could facilitate better management strategies to combat marine debris pollution in this region. 

Keywords: Marine debris; CCI; PAI; HALI; Plastics; Kanyakumari beach
DOI: 10.6084/m9.figshare.12439886.v1
title: Steatosis_Dataset_Raw

description: Raw whole slide liver tissue images.
DOI: 10.6084/m9.figshare.21080947.v1
title: anger index.xlsx

description: anger index <br>
DOI: 10.6084/m9.figshare.24201501.v1
title: Data Glove Results

description: Data <br> Imitation of object manipulation underlying shape exploration: from observation to execution - <em>A graph theory analysis of finger gaiting as revealed by an fMRI study</em>
DOI: 10.6084/m9.figshare.25940956.v3
title: Novel approach for testing RAG pipelines

description: This contains the dataset of the manual execution results of test scenarios, the list of RAG repositories, the automatic generation of test cases and execution of test scenarios across 5 open-source RAG pipelines using our approach and RAGAS approach, and automation scripts for generating test cases and execution of test cases across the selected RAG pipelines.
DOI: 10.6084/m9.figshare.29153150.v1
title: Finnsheep reference genome (Oar_Finn): GenomeScope results

description: GenomeScope analysis results that were based on k-mer statistics of PacBio subreads data.
DOI: 10.17632/jn857kmcnf
title: Carambola Leaf Disease Dataset

description: This dataset offers 1,274 images of Averrhoa carambola (starfruit) leaves, capturing various conditions to aid machine learning applications in plant health monitoring and disease detection. Collected from agricultural sites in Bangladesh, it includes seven distinct categories representing typical health challenges faced in starfruit cultivation.

#Dataset:
Algal Leaf Spot: 324 images
Insect Pest: 189 images
Leaf Curl Virus: 67 images
Iron Deficiency: 189 images
Fruits: 18 images
Old: 158 images
Healthy: 329 images

#Purpose:
Supports development of AI-based tools for plant disease detection Enables early intervention and sustainable farming practices
Provides a resource for researchers in agriculture, plant pathology, and AI.
DOI: 10.6084/m9.figshare.1385218.v1
title: HBM : Hierarchical GST partitioning and Outlier detection (BUGS encoded)

description: HBM : Bayesian Hierarchical GST partitioning and Outlier detection
DOI: 10.23645/epacomptox.6062542.v1
title: High-throughput screening data for estrogen receptor model

description: Estrogen receptor model data from the manuscript titled�Integrated Model of Chemical Perturbations of Biological Pathways Using 18 In Vitro High-throughput Screening Assays for the Estrogen Receptor�(Judson et al) published in Toxicological Science.�
DOI: 10.17632/dnzcszdnc2
title: Data for: Role of Indigenous and local knowledge in seasonal forecasts and climate adaptation: A case study of smallholder farmers in Chiredzi, Zimbabwe

description: The dataset consists of survey data collected from 100 smallholder farmers in Chiredzi district, Zimbabwe on the indigenous and local knowledge used for weather and seasonal forecasting. In addition, the dataset consists of the questionnaire survey guide used to collect the data from smallholder farmers. What is enclosed in the spreadsheet are the climate-decisions that farmers after forecasting and the overall climate adaptation responses implemented by farmers. 
The dataset is behind all the analysis conducted and presented in the article "Role of Indigenous and local knowledge in seasonal forecasts and climate adaptation: A case study of smallholder farmers in Chiredzi, Zimbabwe" published by Environmental Science and Policy journal.
DOI: 10.6084/m9.figshare.22226176.v1
title: Supplementary Material for: Alterations in the proteome of developing neocortical synaptosomes in the absence of MET signaling revealed by comparative proteomics

description: Alterations in the expression of genes encoding proteins involved in synapse formation, maturation and function are a hallmark of many neurodevelopmental and psychiatric disorders. For example, there is reduced neocortical expression of the MET receptor tyrosine kinase (MET) transcript and protein in autism spectrum disorder and Rett syndrome. Preclinical in vivo and in vitro models manipulating MET signaling reveal that the receptor modulates excitatory synapse development and maturation in select forebrain circuits. The molecular adaptations underlying the altered synaptic development remain unknown. We performed a comparative mass spectrometry analysis of synaptosomes generated from the neocortex of wild type and Met null mice during the peak of synaptogenesis (postnatal day 14; data are available from ProteomeXchange with identifier PXD033204). The analyses revealed broad disruption of the developing synaptic proteome in the absence of MET, consistent with the localization of MET protein in pre- and postsynaptic compartments, including proteins associated with the neocortical synaptic MET interactome and those encoded by syndromic and ASD risk genes. In addition to an overrepresentation of altered proteins associated with the SNARE complex, multiple proteins in the ubiquitin-proteasome system and associated with the synaptic vesicle, as well as proteins that regulate actin filament organization and synaptic vesicle exocytosis/endocytosis, were disrupted. Taken together, the proteomic changes are consistent with structural and functional changes observed following alterations in MET signaling. We hypothesize that the molecular adaptations following Met deletion may reflect a general mechanism that produces circuit-specific molecular changes due to loss or reduction of synaptic signaling proteins.
DOI: 10.6084/m9.figshare.26809324.v2
title: Cenabi Ahmet Pasha Mosque muqarnas Grasshopper code (Rhino 6)

description: Cenabi Ahmet Pasha Mosque Muqarnas Grasshopper Code. Coded in Rhino 6.
DOI: 10.6084/m9.figshare.5165350.v1
title: Distasteful nectar deters floral robbery

description: Data for the figures in Current Biology paper includes: behaviour, alkaloids in flowers and nectar
DOI: 10.1594/pangaea.935055
title: Inorganic geochemistry of sedimentary rocks in the catchment of river Thuringian Saale during the last 600 Ma

description: A literature retrieval was performed for whole rock geochemical analyses of sedimentary, magmatic and metamorphic rocks in the catchment of River Thuringian Saale for the past 600 Ma. Considering availability and coincidence with paleontological an facies data the following indicators seem suitable to detect environmental and climatic changes: biogenic P for Paleoproductivity, STI Index for weathering intensity, Ni/Co-ratio for redox conditions, relative enrichments of Co, Ba and Rb versus crustal values for volcanic activity at varying differentiation. The Mg/Ca-ratio as proxy for salinity is applicable in evaporites. The binary plot Nb/Y versus Zr/TiO2 indicates a presently eroded volcanic level of the Bohemian Massif as catchment area for the Middle Bunter, whereas higly differentiated volcanics provided source material for Neoproterozoic greywackes. A positive Eu-anomaly is limited to the Lower Bunter and implies mafic source rocks perhaps formerly located in the Bohemian Massif.
DOI: 10.17632/mfz7x3zxg6
title: Phosphorylation by JNK Switches BRD4 Functions

description: Original raw data for western blots, autoradiographs and microscopy images associated with the study entitled 'Phosphorylation by JNK Switches BRD4 Functions'. The study shows that the transcriptional and chromatin regulator BRD4 is phosphorylated by the JNK kinase, leading to its release from chromatin and the switching of its functions. The deposited original, uncropped raw data is organized according to and labeled with the figure number, panel letter and the label given for each cropped image shown in the published study.
DOI: 10.6084/m9.figshare.12019017.v1
title: The microbiota of the Lasius fuliginosus and Pella laticollis in the host–myrmecophile interactions

description: Table S1. Detailed taxonomic analyses at different ranks with the data obtained for the samples tested.Figure S1. Detailed taxonomic analyses at different ranks. Sunburst charts show the relative abundance of microbial 16S rDNA sequences at different taxonomic levels. The first level represents the kingdom; the second level represents all phyla present in a particular sample; subsequent next levels represent the class, order, family and genus.<br>
DOI: 10.6084/m9.figshare.25011140.v2
title: Detecting and recognizing characters in Greek papyri with YOLOv8, DeiT and SimCLR

description: This dataset describes the prediction outputs of the approach by Turnbull and Mannix (2024) to automate the transcription of scanned papyri fragments, on more than 4,500 images from the Oxyrhynchus Papyri.
DOI: 10.6084/m9.figshare.26325799.v1
title: goa_human_rna.gaf

description: Gene Annotation File (GAF), listing manually curated Gene Ontology annotations linked to human non-coding RNAs in the Gene Ontology Annotation (GOA) database. The file was downloaded from https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/. GOA release: GO version 2024-06-13; Annotation set created on 2024-06-13 06:09.
DOI: 10.6084/m9.figshare.5998583.v7
title: multiAtlasTT_data

description: Multi-Atlas Transfer Tools for Neuroimaging (maTT)<br><br>This figshare repository contains the data used for the maTT project. The <b>atlas_data</b> folder here contains additional .gcs files that can be used for the maTT2 functionality. When running maTT2, the data here should be organized into each respective atlas folder (here: <i>https://github.com/faskowit/multiAtlasTT/tree/master/atlas_data</i>). When this tar.gz is unzipped in the multiAtlasTT base directory, it should automatically unzip into this structure.<br><br>Please check out the accompanying Github repository for details about using maTT and maTT2. <br><br>These gcs files were created after labeling the Mindboggle 101 individual subjects data with the maTT label transfer scripts, and then creating a GCS with these individual subject annotation files. Note: only light quality control was performed on the FreeSurfer outputs. Unlike the Mindboggle project, the annotation files were not carefully checked. Therefore, please carefully check the outputs of this app to make sure the data quality is sufficient. <br><br>See also app-multiAtlasTT (<i>https://github.com/faskowit/app-multiAtlasTT</i>) for the brainlife.io version of this tool, which will automatically download the info you need from this data repo.<br><sub>Any opinion, findings, and conclusions or recommendations expressed in this material are those of the authors(s) and do not necessarily reflect the views of the National Science Foundation.</sub><br><br><br>
DOI: 10.6084/m9.figshare.7842800.v1
title: Additional file 10: of A large close relative of C. elegans is slow-developing but not long-lived

description: Fecundity_lifetime_access_data.tsv. Fecundity with lifetime access to males data. (TSV 2 kb)
DOI: 10.17632/rjxmmmvbvs
title: Two-year spawning migration as a life history strategy of sea trout

description: Abstract

In this study we used radio-telemetry derived data of riverine movements and spawning migration behaviour of wild sea trout tagged in a large, northern Baltic Sea river system, the Tornionjoki River. Tracking results indicate that both immature and mature trout utilize the freshwater environments for overwintering, and that previous spawning experience and age of tagged individuals were important for the maturation likelihood and subsequent direction of migration (mature spawners migrated upstream, immature fish returned to sea). The results indicate that the population has adopted a two-year spawning migration cycle, where individuals overwinter in-river both pre- and post-spawning. The prolonged freshwater stay of sea trout migrants needs to be taken into consideration in management to ensure adequate protection of both immature and mature sea trout. 

General information

Title of Dataset: Two-year spawning migration as a life history strategy of sea trout (Salmo trutta L.)
DOI: doi: 10.17632/rjxmmmvbvs.1

Contact Information: 
Principal Investigator Contact Information Name: Linus Lähteenmäki 
Institution: Åbo Akademi University Address: Aurum, Henriksgatan 2–20520 Åbo, Finland, Email: linus.lahteenmaki@abo.fi, ORCID:https://orcid.org/0000-0002-3931-3595

Date of data collection (approximate date): 01-04-2018 - 31-12-2021
Geographic location of data collection: Tornionjoki River system (65°46 N, 24°07 E)

Information about funding sources that supported the collection of the data: This study was funded by the Lapland´s Centre for Economic Development, Transport and the Environment, the Finnish–Swedish Transboundary River Commission, the Swedish Agency for Marine and Water Management, Natural Resources Institute Finland, Kempestiftelserna, Swedish University of Agricultural Science, Åbo Akademi University and Svenska Kulturfonden.

Recommended citation for this dataset: Lähteenmäki, L., Huusko, R., Hellström, G., Snickars, M., & Romakkaniemi, A. (in prep.) Data from: Two-year spawning migration as a life history strategy of sea trout (Salmo trutta L.) in large, high latitude river systems. Mendeley Data, V1, doi: 10.17632/rjxmmmvbvs.1. 

All datasets used in the data analysis and generation of the visualizations for this study are provided in this repository. Please view the "READ ME" file For more detailed information on dataset contents
DOI: 10.6084/m9.figshare.1279410.v1
title: JUDICIAL REVIEW AND ITS EXCLUSION IN CERTAIN ADMINISTRATIVE ACTION : AN OVERVIEW

description: The advent of the concept of welfare state during twentieth century led to development of dministration and administrative law for the betterment of public welfare, the statutes has empowered to administrative authority and given very wide powers to Administration for Public Interest Protection. The discretionary power for administration, is thus<br>to be tolerated. However, it must be kept within the bounds of law. It has increasingly become<br>important to control the administration, consistent with efficiency in such a way that it does not<br>interfere with impurity with the rights of the individual.