cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2gk5fn
title: CCDC 2280621: Experimental Crystal Structure Determination

description: Related Article: Thomas W. Chamberlain, Yasmine, Claire T. Coulthard, Guy J. Clarkson, Volkan Degirmenci, Yuni K. Krisnandi, Richard I. Walton|2023|CrystEngComm|25|5629|doi:10.1039/D3CE00865G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gk5gp
title: CCDC 2280622: Experimental Crystal Structure Determination

description: Related Article: Thomas W. Chamberlain, Yasmine, Claire T. Coulthard, Guy J. Clarkson, Volkan Degirmenci, Yuni K. Krisnandi, Richard I. Walton|2023|CrystEngComm|25|5629|doi:10.1039/D3CE00865G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gn37h
title: CCDC 2283436: Experimental Crystal Structure Determination

description: Related Article: Min Chen, Dameng Sun, Jiahe Li, Zhiyuan Wang, Hongming Liu, Lixia Pan, Hailan Chen, Zhen Ma|2023|New J.Chem.|47|18785|doi:10.1039/D3NJ03445C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gn38j
title: CCDC 2283437: Experimental Crystal Structure Determination

description: Related Article: Min Chen, Dameng Sun, Jiahe Li, Zhiyuan Wang, Hongming Liu, Lixia Pan, Hailan Chen, Zhen Ma|2023|New J.Chem.|47|18785|doi:10.1039/D3NJ03445C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.23641/asha.24422635
title: Children’s and adults’ production of <i>when</i>-clauses (Zhang et al., 2023)

description: <b>Purpose:</b> This is the first study to investigate the combined effects of processing-based factors (i.e., clause length and clause order) and discourse-pragmatic factors (i.e., information structure) on children’s and adults’ production of adverbial <i>when</i>-clauses.<b>Method:</b> In a sentence repetition task, 16 three-year-old and 16 five-year-old children as well as 17 adults listened to and watched an animated story and then were asked to repeat what they had just heard and seen. Each story contained an adverbial <i>when</i>-clause and its main clause. The sentences were manipulated for their clause order, information structure, and clause length.<b>Results:</b> Adults tended to change main–<i>when</i> clause orders to <i>when</i>–main in their repetitions, and they showed a strong preference for the given–new order of information. In contrast, 3-year-olds tended to change <i>when</i>–main clause orders to main–<i>when</i>, and they showed a preference for the new–given order of information. In addition, 3-year-olds tended to produce short–long clause orders irrespective of what they had heard, whereas adults produced both short–long and long–short orders in line with the input. In general, 5-year-olds were more adultlike in their production compared to 3-year-olds.<b>Conclusions:</b> Young children were strongly affected by processing-based factors in their production of complex sentences. They tended to order main and <i>when</i>-clauses in a way that requires less planning and processing load. However, they have not yet attained an adultlike sensitivity to discourse-pragmatic factors.<b>Supplemental Material S1.</b> Test sentences for the sentence repetition task.<b>Supplemental Material S2.</b> Significant effects and interactions in the final model of the factors influencing participants’ changes of clause length (in syllables).<b>Supplemental Material S3</b><b>. </b>Pairwise comparisons of the effect of input clause order on each age group’s changes of clause order.<b>Supplemental Material S4. </b>Pairwise comparisons of the effect of input information order on each age group’s changes of information order.<b>Supplemental Material S5. </b>Pairwise comparisons of the effects of input clause length and input information order on each age group’s changes of clause length (in words).Zhang, S., Junge, B., Lieven, E., Brandt, S., & Theakston, A. (2023). The competition between processing and discourse-pragmatic factors in children’s and adults’ production of adverbial <i>when</i>-clauses. <i>Journal of Speech, Language, and Hearing Research</i>. Advance online publication. https://doi.org/10.1044/2023_JSLHR-23-00238
DOI: 10.6084/m9.figshare.24460171
title: <b>Effects of epidural analgesia at 1 cm cervical dilatation </b><b>on</b><b> multiparae: A retrospective cohort study</b><b>using </b><b>propensity score</b><b>-</b><b>match</b><b>ing</b>

description: <b>Effects of epidural analgesia at 1 cm cervical dilatation </b><b>on</b><b> multiparae: A retrospective cohort study</b><b>using </b><b>propensity score</b><b>-</b><b>match</b><b>ing</b>
DOI: 10.5281/zenodo.10054454
title: MOLEKULYAR FIZIKANING PAYDO BO'LISHI VA RIVOJLANISHI
DOI: 10.5281/zenodo.10054390
title: CANCER DE MAMA EM HOMENS: A FALTA DE CONHECIMENTO DA POPULAÇÃO SOBRE O CÂNCER DE MAMA MASCULINO

description: uma ressalta sobre a importância de educar a população sobre a existência do câncer de mama masculino e incentivar os homens a procurar atendimento médico e realizar exames de rotina para detecção precoce da doença. Objetivo: a referida pesquisa está voltada para conscientizar a população sobre o câncer de mama em homens, destacando sua existência e a importância da prevenção e diagnóstico precoce. Além disso, enfatiza o papel crucial da enfermagem na educação e sensibilização dos homens para cuidarem de sua saúde. Método: trata-se de uma revisão integrativa da literatura, com artigos pesquisados e publicados nas bases de dados MediLine, Scientific Eletronic Librany Online (SciELO), Biblioteca Virtual em Saúde (BVS), Literatura Latino-Americana e do Caribe em Ciências da Saúde (LILACS) e Pubmed, contemplando os anos de 2017 a 2023, sendo mantidos para a escrita 15 artigos. Desenvolvimento:foram analisados artigos de competência abrangente no que diz respeito a atuação do enfermeiro na atenção da saúde masculina, tendo em foco o câncer de mama. Dentre eles, manuais de relevância internacional e padronizações do Ministério da Saúde, os quais elucidaram a linha de pesquisa do presente estudo. Conclusão: a conscientização sobre o câncer de mama em homens é fundamental para o diagnóstico precoce e tratamento eficaz. A enfermagem desempenha um papel crucial na promoção da saúde masculina e na educação da população sobre essa condição.
DOI: 10.5281/zenodo.10054453
title: MOLEKULYAR FIZIKANING PAYDO BO'LISHI VA RIVOJLANISHI
DOI: 10.5281/zenodo.10054389
title: CANCER DE MAMA EM HOMENS: A FALTA DE CONHECIMENTO DA POPULAÇÃO SOBRE O CÂNCER DE MAMA MASCULINO

description: uma ressalta sobre a importância de educar a população sobre a existência do câncer de mama masculino e incentivar os homens a procurar atendimento médico e realizar exames de rotina para detecção precoce da doença. Objetivo: a referida pesquisa está voltada para conscientizar a população sobre o câncer de mama em homens, destacando sua existência e a importância da prevenção e diagnóstico precoce. Além disso, enfatiza o papel crucial da enfermagem na educação e sensibilização dos homens para cuidarem de sua saúde. Método: trata-se de uma revisão integrativa da literatura, com artigos pesquisados e publicados nas bases de dados MediLine, Scientific Eletronic Librany Online (SciELO), Biblioteca Virtual em Saúde (BVS), Literatura Latino-Americana e do Caribe em Ciências da Saúde (LILACS) e Pubmed, contemplando os anos de 2017 a 2023, sendo mantidos para a escrita 15 artigos. Desenvolvimento:foram analisados artigos de competência abrangente no que diz respeito a atuação do enfermeiro na atenção da saúde masculina, tendo em foco o câncer de mama. Dentre eles, manuais de relevância internacional e padronizações do Ministério da Saúde, os quais elucidaram a linha de pesquisa do presente estudo. Conclusão: a conscientização sobre o câncer de mama em homens é fundamental para o diagnóstico precoce e tratamento eficaz. A enfermagem desempenha um papel crucial na promoção da saúde masculina e na educação da população sobre essa condição.
DOI: 10.5281/zenodo.10054235
title: MinION seq 1
DOI: 10.5281/zenodo.10054236
title: MinION seq 1
DOI: 10.5281/zenodo.10054486
title: MOLEKULAR-KINETIK NAZARIYANING EHTIMOLIY-STATISTIK ASOSLARI VA UNI O'QITISHDAGI IZCHILLIK.
DOI: 10.5281/zenodo.10054485
title: MOLEKULAR-KINETIK NAZARIYANING EHTIMOLIY-STATISTIK ASOSLARI VA UNI O'QITISHDAGI IZCHILLIK.
DOI: 10.5281/zenodo.10054509
title: THE IMPORTANCE OF INTERDISCIPLINARY INTEGRATION OF SUBJECTS RELATED TO SOLID STATE PHYSICS WITH THE NATURAL SCIENCES IN THEIR HIGH SCHOOLS
DOI: 10.5281/zenodo.10054508
title: THE IMPORTANCE OF INTERDISCIPLINARY INTEGRATION OF SUBJECTS RELATED TO SOLID STATE PHYSICS WITH THE NATURAL SCIENCES IN THEIR HIGH SCHOOLS
DOI: 10.5281/zenodo.8220999
title: Learning to resist distraction by spatially predictable luminance transients and color singletons: same or different mechanisms?

description: The file contains the dataset related to the paper entitled "Learning to resist distraction by spatially predictable luminance transients and color singletons: same or different mechanisms?" to appear in Visual Cognition.
The folder contains a text file named README.txt that contains the explanation of the folder and file structure.
DOI: 10.5281/zenodo.10054403
title: Overview of Research Data Sharing Policies Across Various Scientific Publishers

description: Context 
With the aim of advancing trust in published research, (scientific) publishers are developing Research Data Sharing Policies for their portfolio. Some publishers have the same policy across all journals. For example for the publishers Frontiers and Springer-Nature, a Data Availability statement is mandatory for all journals in their portfolio. While other publishers have different policy levels depending on the journal (e.g. Elsevier, American Chemical Society). In this list, one will find a short overview of Research Data Sharing Policies across publishers (mostly relevant to the Faculty of Science at Utrecht University).
Limitations
The list of publishers does not encompass all scientific publishers. Some  Research Data Sharing Policies might be subjected to change.
DOI: 10.5281/zenodo.10054510
title: GNPS - Non-targeted 2D LC-MS/MS analysis of NEHLA Dissolved Organic Matter (1/2)
DOI: 10.5281/zenodo.10054511
title: GNPS - Non-targeted 2D LC-MS/MS analysis of NEHLA Dissolved Organic Matter (1/2)
DOI: 10.5281/zenodo.8220998
title: Learning to resist distraction by spatially predictable luminance transients and color singletons: same or different mechanisms?

description: The file contains the dataset related to the paper entitled "Learning to resist distraction by spatially predictable luminance transients and color singletons: same or different mechanisms?" to appear in Visual Cognition.
The folder contains a text file named README.txt that contains the explanation of the folder and file structure.
DOI: 10.5281/zenodo.10054561
title: Data from: Management-induced micro-ecosystems in crop fields alter the functional trait composition of arable plant communities

description: Data used for RLQ analysis. Include trait table, environment table and species table. 
Traits/species table: EQUAR, PLAMA and SPRAR were removed due to few observations. CHEPR and TAROF were removed due to lack of traits data.
Environmental table:MD (mechanical disturbance) is a combination or location and a row-hoeing coefficient that assumes the impact of the hoe decrease with increasing distance from the centre of the hoe tine. cr hoed twice and ic hoed once both got a value of 2 and to distinguish them the latter was changed manually to 2.5
DOI: 10.5281/zenodo.10054570
title: GNPS - Non-targeted 2D LC-MS/MS analysis of NEHLA Dissolved Organic Matter (2/2)
DOI: 10.5281/zenodo.10054571
title: GNPS - Non-targeted 2D LC-MS/MS analysis of NEHLA Dissolved Organic Matter (2/2)
DOI: 10.5281/zenodo.10013098
title: Data and code for the article " Dissimilarity of vertebrate trophic interactions reveals spatial uniqueness but functional redundancy across Europe"

description: Research compendium to reproduce analyses and figures of the article: Dissimilarity of vertebrate trophic interactions reveals spatial uniqueness but functional redundancy across Europe by Gaüzère et al. published in Current Biology
Pierre Gaüzère
General
This repository is structured as follow:

data/: contains data required to reproduce figures and tables
analyses/: contains scripts organized sequentially. A -> B -> C -> ..
outputs/: follows the structure of analyses. Contains intermediate numeric results used to produce the figures
figures_tables/: Contains the figures of the paper
The analysis pipeline should be clear once opening the code. Contact me if needed but try before please. 
Figures & tables
Figures will be stored in figures_tables/. Tables will be stored in outputs/.
DOI: 10.5281/zenodo.10013099
title: Data and code for the article " Dissimilarity of vertebrate trophic interactions reveals spatial uniqueness but functional redundancy across Europe"
DOI: 10.5281/zenodo.10036360
title: Data and code for the article " Dissimilarity of vertebrate trophic interactions reveals spatial uniqueness but functional redundancy across Europe"

description: Research compendium to reproduce analyses and figures of the article: Dissimilarity of vertebrate trophic interactions reveals spatial uniqueness but functional redundancy across Europe by Gaüzère et al. published in Current Biology
Pierre Gaüzère
General
This repository is structured as follow:

data/: contains data required to reproduce figures and tables
analyses/: contains scripts organized sequentially. A -> B -> C -> ..
outputs/: follows the structure of analyses. Contains intermediate numeric results used to produce the figures
figures_tables/: Contains the figures of the paper
Figures & tables
Figures will be stored in figures_tables/. Tables will be stored in outputs/.
DOI: 10.5281/zenodo.10049814
title: Data and code for the article " Dissimilarity of vertebrate trophic interactions reveals spatial uniqueness but functional redundancy across Europe"

description: Research compendium to reproduce analyses and figures of the article: Dissimilarity of vertebrate trophic interactions reveals spatial uniqueness but functional redundancy across Europe by Gaüzère et al. published in Current Biology
Pierre Gaüzère
General
This repository is structured as follow:

data/: contains data required to reproduce figures and tables
analyses/: contains scripts organized sequentially. A -> B -> C -> ..
outputs/: follows the structure of analyses. Contains intermediate numeric results used to produce the figures
figures_tables/: Contains the figures of the paper
The analysis pipeline should be clear once opening the code. Contact me if needed but try before please. 
Figures & tables
Figures will be stored in figures_tables/. Tables will be stored in outputs/.
DOI: 10.6084/m9.figshare.24271095
title: Veliparib (ABT-888), a PARP inhibitor potentiates the cytotoxic activity of 5-fluorouracil by inhibiting MMR pathway through deregulation of MSH6 in colorectal cancer stem cells

description: Sensitization of mismatch repair (MMR)-deficient colorectal cancer (CRC) cells by 5-Fluorouracil (5-FU) is well-documented. But not much is known about the treatment of MMR-proficient CRC cancer stem cells (CRC-CSCs). Here, we investigated whether a PARP inhibitor (ABT-888) can enhance the 5-FU-mediated apoptosis in CRC-CSCs through MMR pathway inhibition. The anti-cancer action of 5-FU+ABT-888 combination in CRC-CSCs has been studied by using in vitro, ex vivo, and in vivo preclinical model systems. 5-FU caused DNA damage in CRC-CSCs, and ABT-888 enhanced the accumulation of DNA mismatches by downregulating the MMR pathway, triggering S-phase arrest, and finally apoptosis and cell death in 5-FU-pre-treated MMR-proficient-CRC-CSCs at much lower concentrations than their individual treatments. After 5-FU treatment, PARylated-PARP1 activated MMR pathway by interacting with MSH6. But, upon ABT-888 treatment in 5-FU-pre-exposed CSCs, PARylation was inhibited, as a result of which PARP1 could not interact with MSH6, and other MMR proteins were downregulated. The role of MSH6 in PARP1-mediated MMR activation, was confirmed by silencing MSH6 gene, which resulted in MMR pathway shutdown. Similar results were obtained in ex vivo and in vivo model systems. 5-FU+ABT-888 combination enhanced CRC-CSCs death by increasing DNA damage accumulation and simultaneously inhibiting the MMR pathway in MMR-proficient cells. But this study does not discuss whether the combination treatment will increase the sensitivity of MMR-deficient CSCs, for which further research will be performed in the future. 5-FU is a well-known drug commonly used to treat colorectal cancer and it causes DNA damage inside the cancer cells. The limitation of 5-FU treatment is the development of chemoresistance due to the high DNA repair capacity of cancer stem cells present in the tumor microenvironment. In this study, a novel chemotherapeutic approach has been developed to target colorectal cancer stem cells by using a combination of 5-FU and a PARP1 inhibitor (ABT-888). Here, 5-FU caused DNA damage and ABT-888 enhanced the accumulation of the DNA lesions by inhibiting the MMR repair pathway in 5-FU-pre-treated MMR-proficient-CRC-CSCs. This resulted in S-phase arrest, induction of apoptosis, and finally CSCs death.
DOI: 10.6084/m9.figshare.24271095.v1
title: Veliparib (ABT-888), a PARP inhibitor potentiates the cytotoxic activity of 5-fluorouracil by inhibiting MMR pathway through deregulation of MSH6 in colorectal cancer stem cells

description: Sensitization of mismatch repair (MMR)-deficient colorectal cancer (CRC) cells by 5-Fluorouracil (5-FU) is well-documented. But not much is known about the treatment of MMR-proficient CRC cancer stem cells (CRC-CSCs). Here, we investigated whether a PARP inhibitor (ABT-888) can enhance the 5-FU-mediated apoptosis in CRC-CSCs through MMR pathway inhibition. The anti-cancer action of 5-FU+ABT-888 combination in CRC-CSCs has been studied by using in vitro, ex vivo, and in vivo preclinical model systems. 5-FU caused DNA damage in CRC-CSCs, and ABT-888 enhanced the accumulation of DNA mismatches by downregulating the MMR pathway, triggering S-phase arrest, and finally apoptosis and cell death in 5-FU-pre-treated MMR-proficient-CRC-CSCs at much lower concentrations than their individual treatments. After 5-FU treatment, PARylated-PARP1 activated MMR pathway by interacting with MSH6. But, upon ABT-888 treatment in 5-FU-pre-exposed CSCs, PARylation was inhibited, as a result of which PARP1 could not interact with MSH6, and other MMR proteins were downregulated. The role of MSH6 in PARP1-mediated MMR activation, was confirmed by silencing MSH6 gene, which resulted in MMR pathway shutdown. Similar results were obtained in ex vivo and in vivo model systems. 5-FU+ABT-888 combination enhanced CRC-CSCs death by increasing DNA damage accumulation and simultaneously inhibiting the MMR pathway in MMR-proficient cells. But this study does not discuss whether the combination treatment will increase the sensitivity of MMR-deficient CSCs, for which further research will be performed in the future. 5-FU is a well-known drug commonly used to treat colorectal cancer and it causes DNA damage inside the cancer cells. The limitation of 5-FU treatment is the development of chemoresistance due to the high DNA repair capacity of cancer stem cells present in the tumor microenvironment. In this study, a novel chemotherapeutic approach has been developed to target colorectal cancer stem cells by using a combination of 5-FU and a PARP1 inhibitor (ABT-888). Here, 5-FU caused DNA damage and ABT-888 enhanced the accumulation of the DNA lesions by inhibiting the MMR repair pathway in 5-FU-pre-treated MMR-proficient-CRC-CSCs. This resulted in S-phase arrest, induction of apoptosis, and finally CSCs death.
DOI: 10.6084/m9.figshare.24305738
title: An overview of metabolomic and proteomic profiling in bipolar disorder and its clinical value

description: Bipolar disorder (BD) is a complex psychiatric disease characterized by alternating mood episodes. As for any other psychiatric illness, currently there is no biochemical test that is able to support diagnosis or therapeutic decisions for BD. In this context, the discovery and validation of biomarkers are interesting strategies that can be achieved through proteomics and metabolomics. In this descriptive review, a literature search including original articles and systematic reviews published in the last decade was performed with the objective to discuss the results of BD proteomic and metabolomic profiling analyses and indicate proteins and metabolites (or metabolic pathways) with potential clinical value. A large number of proteins and metabolites have been reported as potential BD biomarkers; however, most studies do not reach biomarker validation stages. An effort from the scientific community should be directed toward the validation of biomarkers and the development of simplified bioanalytical techniques or protocols to determine them in biological samples, in order to translate proteomic and metabolomic findings into clinical routine assays.
DOI: 10.6084/m9.figshare.24305738.v2
title: An overview of metabolomic and proteomic profiling in bipolar disorder and its clinical value

description: Bipolar disorder (BD) is a complex psychiatric disease characterized by alternating mood episodes. As for any other psychiatric illness, currently there is no biochemical test that is able to support diagnosis or therapeutic decisions for BD. In this context, the discovery and validation of biomarkers are interesting strategies that can be achieved through proteomics and metabolomics. In this descriptive review, a literature search including original articles and systematic reviews published in the last decade was performed with the objective to discuss the results of BD proteomic and metabolomic profiling analyses and indicate proteins and metabolites (or metabolic pathways) with potential clinical value. A large number of proteins and metabolites have been reported as potential BD biomarkers; however, most studies do not reach biomarker validation stages. An effort from the scientific community should be directed toward the validation of biomarkers and the development of simplified bioanalytical techniques or protocols to determine them in biological samples, in order to translate proteomic and metabolomic findings into clinical routine assays.