cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.628076.v1
title: Gini and the Politicization of Immigration

description: These three graphs explore the relationship between the Gini coefficient for economic inequality (World Bank data) and the politicization of immigration. The politicization of immigration is measured from political claims in newspapers (data from http://www.som-project.eu/), and a distinction is drawn between salience (more claims about immigration) and polarization (positions of claims differ more). This analysis was a wide shot to begin with. Solt (2011, Journal of Politics 73(3):821-30) showed that nationalism is associated with economic inequality: more inequality prompts more nationalism ("diversion"). It is conceivable that this can be expanded to the politicization of immigration, which might be linked to nationalism. The figures (simple scatter plots) suggest that this is not the case.
DOI: 10.6084/m9.figshare.628065
title: Phylogenetic tree from RDP showing Microbacterium sp. str. UCD-TDU

description: 16S Phylogenetic tree from RDP showing Microbacterium sp. str. UCD-TDU in context of representatives of that genus. From this tree we concluded that taxonomy of this genus is insufficiently organized to give a species name based soley on 16S sequence.
DOI: 10.6084/m9.figshare.628054
title: Phylogenetic tree from RDP showing Brachybacterium muris UCD-AY4 in context of genus

description: An RDP-generated .tre file showing Brachybacterium muris UCD-AY4 along with numerous other members of the genus. This tree was used to asssign the species to this isolate.
DOI: 10.6084/m9.figshare.628065.v1
title: Phylogenetic tree from RDP showing Microbacterium sp. str. UCD-TDU

description: 16S Phylogenetic tree from RDP showing Microbacterium sp. str. UCD-TDU in context of representatives of that genus. From this tree we concluded that taxonomy of this genus is insufficiently organized to give a species name based soley on 16S sequence.
DOI: 10.6084/m9.figshare.628069.v1
title: STAT6 turnover

description: <strong>Decay of Stat6 activation in Ttc7-fsn B cells.</strong> Purified splenic B cells were stimulated with IL-4 for 30 minutes, washed 3X and allowed to rest for 15 or 30 minutes, then stained for Stat6 (red) and the nucleus (green) and imaged with confocal microscopy using a 60x objective. Co-localization of Stat6 with nucleus, denoting activation, is yellow. Ttc7fsn cells show a similar trend to WT cells at both time points, indicating they have the inherent ability to downregulate Stat6 activation when IL-4 stimulus is removed.
DOI: 10.6084/m9.figshare.627645
title: Mapping file for state and county FIPS codes

description: This file maps the state and county fips codes in the data files to standard state and county names.
DOI: 10.6084/m9.figshare.628054.v1
title: Phylogenetic tree from RDP showing Brachybacterium muris UCD-AY4 in context of genus

description: An RDP-generated .tre file showing Brachybacterium muris UCD-AY4 along with numerous other members of the genus. This tree was used to asssign the species to this isolate.
DOI: 10.6084/m9.figshare.599005
title: Gaussian Job Archive for C3H6O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.627353
title: Bushmeat and Fisheries Lecture

description: My lecture on bushmeat, pirate fishing and histoircal fisheries given at Columbia University
DOI: 10.6084/m9.figshare.627353.v1
title: Bushmeat and Fisheries Lecture

description: My lecture on bushmeat, pirate fishing and histoircal fisheries given at Columbia University
DOI: 10.6084/m9.figshare.501263
title: Simulated county- and state-level maize yields, 1979-2012

description: This dataset contains simulations - performed as part of the project "Predicting agricultural impacts of large-scale drought:2012 and the case for better modeling" -- for county and state-level maize yields and production totals in the conterminous US for the year 2012 as well as hindcasts for maize yields and production totals from 1979-2011 for use in validation and analysis. The zero lead time forecasts for 2012 are estimated from simulations of pDSSAT, a gridded high-resolution version of the detailed biophysical crop growth model CERES-Maize (as part of DSSAT). The simulations were conducted in December 2012 and published to figshare in January 2013 in anticipation of the release of the official statistics on county-level US maize yields from USDA NASS in February 2013. Paper detailing this work is Joshua Elliott, Michael Glotter, Neil Best, Ken Boote, Jim Jones, Jerry Hatfield, Cynthia Rosenzweig, Leonard A. Smith, and Ian Foster, (2013). Predicting agricultural impacts of large-scale drought: 2012 and the case for better modeling. Mathematics and Computer Science Division Preprint ANL/MCS-P4034-0213 Argonne National Laboratory, 2013. RDCEP Working Paper No. 13-01. Available at http://www.rdcep.org/predicting-agricultural-impacts-large-scale-drought-2012-and-case-better-modeling and http://www.agmip.org/blog/2013/02/21/predicting-agricultural-impacts-of-large-scale-drought/
DOI: 10.6084/m9.figshare.501263.v1
title: Simulated county- and state-level maize yields, 1979-2012

description: This dataset contains simulations - performed as part of the project "Predicting agricultural impacts of large-scale drought:2012 and the case for better modeling" -- for county and state-level maize yields and production totals in the conterminous US for the year 2012 as well as hindcasts for maize yields and production totals from 1979-2011 for use in validation and analysis. The zero lead time forecasts for 2012 are estimated from simulations of pDSSAT, a gridded high-resolution version of the detailed biophysical crop growth model CERES-Maize (as part of DSSAT). The simulations were conducted in December 2012 and published to figshare in January 2013 in anticipation of the release of the official statistics on county-level US maize yields from USDA NASS in February 2013. Paper detailing this work is Joshua Elliott, Michael Glotter, Neil Best, Ken Boote, Jim Jones, Jerry Hatfield, Cynthia Rosenzweig, Leonard A. Smith, and Ian Foster, (2013). Predicting agricultural impacts of large-scale drought: 2012 and the case for better modeling. Mathematics and Computer Science Division Preprint ANL/MCS-P4034-0213 Argonne National Laboratory, 2013. RDCEP Working Paper No. 13-01. Available at http://www.rdcep.org/predicting-agricultural-impacts-large-scale-drought-2012-and-case-better-modeling and http://www.agmip.org/blog/2013/02/21/predicting-agricultural-impacts-of-large-scale-drought/
DOI: 10.6084/m9.figshare.436023.v1
title: Relationship between gender of conference organizers and conference speakers

description: We graphed seven years of data from the Society of Conservation Biology annual meetings and showed a strong relationship between the number of women organizing a symposium and the number of women speaking in that symposium. <strong>These results are prelimninary and subject to change</strong>
DOI: 10.6084/m9.figshare.446907.v1
title: A Study of the Indus Signs

description: Considering the fact that the Harappan script may have been proto-Brahmi, the underlying language to be expected should be Sanskrit, or proto-Sanskrit, or derivatives of Sanskrit. Many of the rules of evolution that apply to scripts are equivalently true for languages too. Like scripts, languages too render themselves to similar evolutionary inspections, as they too carry imprints of their journey down the ages.
DOI: 10.6084/m9.figshare.478021.v1
title: NSA Poster 2013- Claire Ellis

description: Poster presented at the NSA conference in Nashville in 2013. This research uses the Pacific Oyster as a model organism to characterize the distribution and identify potential functions of DNA methylation. We examined genome-wide methylation patterns to elucidate the mechanisms by which DNA methylation impacts transcriptional processes.
DOI: 10.6084/m9.figshare.446907.v2
title: A Study of the Indus Signs

description: Considering the fact that the Harappan script may have been proto-Brahmi, the underlying language to be expected should be Sanskrit, or proto-Sanskrit, or derivatives of Sanskrit. Many of the rules of evolution that apply to scripts are equivalently true for languages too. Like scripts, languages too render themselves to similar evolutionary inspections, as they too carry imprints of their journey down the ages.
DOI: 10.6084/m9.figshare.427708
title: Data on dyadic male contests

description: Data represents male aggressive behaviors during contests staged between pairs of males in a small test tank measuring 30 × 20 × 20 cm. We focused on three frequent aggressive behaviors: (1) S-position: this threat display usually initiates a fight. Males swim in a parallel or anti-parallel position and bend their bodies in an S-shaped manner with all unpaired fins erect; (2) tail-beats: S-positions are often followed or superimposed by tail-beats, which are fast movements of head and tail in opposing directions that either touch the opponent’s body or send shock waves to the opponent; and (3) bites – we defined all incidences of ramming and bite-like attacks as bites, because both these behaviors occur extremely quickly and thus are indistinguishable to the human eye. We also recorded fight duration until dominance was established. If no dominance was established within 10 minutes of the first interaction, we terminated the fight; those trials were discarded from the analysis of fighting durations, while fight durations were scored as “0” when no aggressive behavior occurred at all (those trials were terminated after a total of 15 minutes of observation). SL of both contestants was taken after a contest by laying the fish flat on plastic foil-covered millimeter paper.
DOI: 10.6084/m9.figshare.478021.v2
title: NSA Poster 2013

description: Poster presented at the NSA conference in Nashville in 2013. This research uses the Pacific Oyster as a model organism to characterize the distribution and identify potential functions of DNA methylation. We examined genome-wide methylation patterns to elucidate the mechanisms by which DNA methylation impacts transcriptional processes.
DOI: 10.6084/m9.figshare.424674
title: National Distribution of Open Access Items in the OAN Database (2012)

description: The dataset shows the national distribution of open access items in Germany (2004-2012) indexed in the database of Open-Access-Netzwerk. The dataset is presented in csv.
DOI: 10.6084/m9.figshare.427708.v1
title: Data on dyadic male contests

description: Data represents male aggressive behaviors during contests staged between pairs of males in a small test tank measuring 30 × 20 × 20 cm. We focused on three frequent aggressive behaviors: (1) S-position: this threat display usually initiates a fight. Males swim in a parallel or anti-parallel position and bend their bodies in an S-shaped manner with all unpaired fins erect; (2) tail-beats: S-positions are often followed or superimposed by tail-beats, which are fast movements of head and tail in opposing directions that either touch the opponent’s body or send shock waves to the opponent; and (3) bites – we defined all incidences of ramming and bite-like attacks as bites, because both these behaviors occur extremely quickly and thus are indistinguishable to the human eye. We also recorded fight duration until dominance was established. If no dominance was established within 10 minutes of the first interaction, we terminated the fight; those trials were discarded from the analysis of fighting durations, while fight durations were scored as “0” when no aggressive behavior occurred at all (those trials were terminated after a total of 15 minutes of observation). SL of both contestants was taken after a contest by laying the fish flat on plastic foil-covered millimeter paper.
DOI: 10.6084/m9.figshare.446907.v3
title: A Study of the Indus Signs

description: Considering the fact that the Harappan script may have been proto-Brahmi, the underlying language to be expected should be Sanskrit, or proto-Sanskrit, or derivatives of Sanskrit. Many of the rules of evolution that apply to scripts are equivalently true for languages too. Like scripts, languages too render themselves to similar evolutionary inspections, as they too carry imprints of their journey down the ages.
DOI: 10.6084/m9.figshare.424674.v1
title: National Distribution of Open Access Items in the OAN Database (2012)

description: The dataset shows the national distribution of open access items in Germany (2004-2012) indexed in the database of Open-Access-Netzwerk. The dataset is presented in csv.
DOI: 10.6084/m9.figshare.446907.v4
title: A Study of the Indus Signs

description: Considering the fact that the Harappan script may have been proto-Brahmi, the underlying language to be expected should be Sanskrit, or proto-Sanskrit, or derivatives of Sanskrit. Many of the rules of evolution that apply to scripts are equivalently true for languages too. Like scripts, languages too render themselves to similar evolutionary inspections, as they too carry imprints of their journey down the ages.
DOI: 10.6084/m9.figshare.397715
title: A novel approach to caracterize Colored Dissolved Organic Matter (CDOM) using in situ multispectral ﬂuoresence and absorption meters

description: Ocean optics 2010 poster presentation
DOI: 10.6084/m9.figshare.397715.v1
title: A novel approach to caracterize Colored Dissolved Organic Matter (CDOM) using in situ multispectral ﬂuoresence and absorption meters

description: Ocean optics 2010 poster presentation
DOI: 10.6084/m9.figshare.446907.v5
title: A Study of the Indus Signs

description: Considering the fact that the Harappan script may have been proto-Brahmi, the underlying language to be expected should be Sanskrit, or proto-Sanskrit, or derivatives of Sanskrit. Many of the rules of evolution that apply to scripts are equivalently true for languages too. Like scripts, languages too render themselves to similar evolutionary inspections, as they too carry imprints of their journey down the ages.
DOI: 10.6084/m9.figshare.347270
title: Effects of plasma processing parameters on adhesion of blood platelets

description: We treated silicon samples in a plasma chamber and exposed them to blood platelets to investigate whether and how plasma processing parameters influence the blood-compatibility of the samples.
DOI: 10.6084/m9.figshare.310419
title: Online course in research writing and publishing for Rwandan researchers

description: This article describes the results of the AuthorAID pilot online course in research writing.
DOI: 10.6084/m9.figshare.327042
title: Gaussian Job Archive for C7H17ClO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.327042.v1
title: Gaussian Job Archive for C7H17ClO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.186044
title: Мөнгөний бодлого шилжих механизм

description: Ер нь аливаа бодлого боловсруулагчид ямар ч бодлого авч хэрэгжүүлсэн тэр нь эдийн засгийн өсөлт, хөгжлийн төлөө байдаг. Гэвч зарим тохиолдолд хүлээлт үр дүнгийн хооронд алд дэлэм шиг томоохон зөрүү гарах нь бий. Тодруулбал өсөлт, хөгжилд хүргэхийн төлөө авч хэрэгжүүлсэн бодлого нь уналт, доройтолд хөтлөх тохиолдол гардаг. Учир нь тухайн бодлогын эдийн засагт нөлөөлөх нөлөө, хугацааны хожимдол, хүч зэрэг нь тодорхойгүй байдгаас ийм явдал болдог. Тиймээс уг ажилд эдийн засагт чухал нөлөөтэй мөнгөний бодлого болоод түүний шилжих механизмийн талаар авч үзэх болно. Мөн уг ажлын зорилго нь Монгол улсын мөнгөний бодлогын эдийн засагт үзүүлэх нөлөөлөл, хугацааны хожимдлыг тодорхойлох, мөн түүнийг дамжуулагч шилжих механизмийг үнэлэх, Монголд аль сувгийн хүч их байдгийг тодорхойлох явдал юм. Шинжилгээний хэсэгт мөнгөний бодлогыг судлахын тулд VAR аргачлалыг ашигласан. Нээлттэй, жижиг эдийн засагтай хөгжиж буй манайх шиг улсад ажиглагддаг гол гурван сувагт гол анхаарлаа хандуулан судаллаа. Судалгааны ажлын үр дүнд мөнгөний нийлүүлэлт М1 –ийн өөрчлөлт бодит гарцын хэмжээ буюу АҮБ-г аль сувгаар дамжсанаасаа шалтгаалан 2-4 сарын дараа өсгөж эхэлдэг байна. Харин инфляцийг 3 сарын дараагаас өсгөдөг нь харагдаж байна.
DOI: 10.6084/m9.figshare.189260
title: Mungunii bodlog

description: Mungunii bodlog
DOI: 10.6084/m9.figshare.201772
title: Raw reads from genome sequencing of Leucobacter sp. str. UCD-THU

description: Raw paired-end 160bp Illumina MiSeq reads from genome sequencing of Leucobacter sp. str. UCD-THU
DOI: 10.6084/m9.figshare.177736
title: Table S2. Clusters involved with indel or mutation events.

description: Clusters involved with indel or mutation events. The 1st column is the Cluster ID, which is consistent with the ID in Table S1. The 2nd column is the cluster conservation of current cluster. The 3rd column is the variation position, which counts according to the alignment result of protein sequences in this cluster. For indel events, the position is an integer. For synonymous mutation and non synonymous mutation, the position is a floating number, in which the integer part marks the position of the amino acid in the alignment result of protein sequences, while the decimal part mark the position of codon. The 4th column shows the amino acid types on current position. The 5th column shows the nucleotide types on current position, indel is marked with "-". The 6th column shows all gene nucleotide profile in current position (for indel, amino acid will be listed). The 7th column shows the variation type (indel, synonymous and non synonymous). The CDS.variation.analysis spreadsheet shows the summary result for CDS.variation.
DOI: 10.6084/m9.figshare.177734
title: Table S1. Orthologs clusters.

description: Orthologs clusters identification among SIs from V. cholerae and V. mimicus genomes. These clusters were identified using the pangenome analysis pipeline (10), strains without genes in the cluster are marked with "-".
DOI: 10.6084/m9.figshare.186044.v1
title: Мөнгөний бодлого шилжих механизм

description: Ер нь аливаа бодлого боловсруулагчид ямар ч бодлого авч хэрэгжүүлсэн тэр нь эдийн засгийн өсөлт, хөгжлийн төлөө байдаг. Гэвч зарим тохиолдолд хүлээлт үр дүнгийн хооронд алд дэлэм шиг томоохон зөрүү гарах нь бий. Тодруулбал өсөлт, хөгжилд хүргэхийн төлөө авч хэрэгжүүлсэн бодлого нь уналт, доройтолд хөтлөх тохиолдол гардаг. Учир нь тухайн бодлогын эдийн засагт нөлөөлөх нөлөө, хугацааны хожимдол, хүч зэрэг нь тодорхойгүй байдгаас ийм явдал болдог. Тиймээс уг ажилд эдийн засагт чухал нөлөөтэй мөнгөний бодлого болоод түүний шилжих механизмийн талаар авч үзэх болно. Мөн уг ажлын зорилго нь Монгол улсын мөнгөний бодлогын эдийн засагт үзүүлэх нөлөөлөл, хугацааны хожимдлыг тодорхойлох, мөн түүнийг дамжуулагч шилжих механизмийг үнэлэх, Монголд аль сувгийн хүч их байдгийг тодорхойлох явдал юм. Шинжилгээний хэсэгт мөнгөний бодлогыг судлахын тулд VAR аргачлалыг ашигласан. Нээлттэй, жижиг эдийн засагтай хөгжиж буй манайх шиг улсад ажиглагддаг гол гурван сувагт гол анхаарлаа хандуулан судаллаа. Судалгааны ажлын үр дүнд мөнгөний нийлүүлэлт М1 –ийн өөрчлөлт бодит гарцын хэмжээ буюу АҮБ-г аль сувгаар дамжсанаасаа шалтгаалан 2-4 сарын дараа өсгөж эхэлдэг байна. Харин инфляцийг 3 сарын дараагаас өсгөдөг нь харагдаж байна.
DOI: 10.6084/m9.figshare.201772.v1
title: Raw reads from genome sequencing of Leucobacter sp. str. UCD-THU

description: Raw paired-end 160bp Illumina MiSeq reads from genome sequencing of Leucobacter sp. str. UCD-THU
DOI: 10.6084/m9.figshare.177727
title: File S2. Identifying core genome, dispensable and unique genes of superintegron (SI) with R.

description: R scripts used in this study.
DOI: 10.6084/m9.figshare.177736.v2
title: Table S2. Clusters involved with indel or mutation events.

description: Clusters involved with indel or mutation events. The 1st column is the Cluster ID, which is consistent with the ID in Table S1. The 2nd column is the cluster conservation of current cluster. The 3rd column is the variation position, which counts according to the alignment result of protein sequences in this cluster. For indel events, the position is an integer. For synonymous mutation and non synonymous mutation, the position is a floating number, in which the integer part marks the position of the amino acid in the alignment result of protein sequences, while the decimal part mark the position of codon. The 4th column shows the amino acid types on current position. The 5th column shows the nucleotide types on current position, indel is marked with "-". The 6th column shows all gene nucleotide profile in current position (for indel, amino acid will be listed). The 7th column shows the variation type (indel, synonymous and non synonymous). The CDS.variation.analysis spreadsheet shows the summary result for CDS.variation.
DOI: 10.6084/m9.figshare.177719
title: File S1. Gene data from V. cholera and V. mimicus.

description: Gene data of SI region from seven V. cholerae and one V. mimicus genomes used in this study.
DOI: 10.6084/m9.figshare.177734.v1
title: Table S1

description: Orthologs clusters identification among SIs from V. cholerae and V. mimicus genomes. These clusters were identified using the pangenome analysis pipeline (10), strains without genes in the cluster are marked with "-".
DOI: 10.6084/m9.figshare.177736.v1
title: Table S2

description: Clusters involved with indel or mutation events. The 1st column is the Cluster ID, which is consistent with the ID in Table S1. The 2nd column is the cluster conservation of current cluster. The 3rd column is the variation position, which counts according to the alignment result of protein sequences in this cluster. For indel events, the position is an integer. For synonymous mutation and non synonymous mutation, the position is a floating number, in which the integer part marks the position of the amino acid in the alignment result of protein sequences, while the decimal part mark the position of codon. The 4th column shows the amino acid types on current position. The 5th column shows the nucleotide types on current position, indel is marked with "-". The 6th column shows all gene nucleotide profile in current position (for indel, amino acid will be listed). The 7th column shows the variation type (indel, synonymous and non synonymous). The CDS.variation.analysis spreadsheet shows the summary result for CDS.variation.
DOI: 10.6084/m9.figshare.159692
title: Raw data for figures 1-7: Anacardic acid, a histone acetyltransferase inhibitor, modulates LPS-induced IL-8 expression in a human alveolar epithelial cell line A549.

description: Figure 1: The dose- and time- dependent IL-8 release from A549 cells in vitro. Figure 2: Time course analysis of LPS-mediated IL-8 gene expression in A549 cells in vitro. Figure 3: Time course analysis of LPS-induced histone H4 acetylation at the promoter region of the IL-8 gene in A549 cells in vitro . Figure 4: Effect of TSA on LPS-stimulated IL-8 release from A549 cells in vitro. Figure 5: Time course analysis of TSA on LPS-stimulated IL-8 gene activation from A549 cells in vitro. Figure 6: Effect of anacardic acid on LPS-stimulated IL-8 release from A549 cells in vitro. Figure 7: Time course analysis of anacardic acid on LPS-stimulated IL-8 gene activation in A549 cells in vitro.
DOI: 10.6084/m9.figshare.177727.v2
title: File S2. Identifying core genome, dispensable and unique genes of superintegron (SI) with R.

description: R scripts used in this study.
DOI: 10.6084/m9.figshare.157353
title: Bacteria cladogram

description: This cladogram is a simplified version of figure 2 in Wu & Eisen ("A simple fast and accurate method of phylogenomic inference, 2008, Genome Biology 2008, 9:R151, doi:10.1186/gb-2008-9-10-r151). Also indicated in the tree are the expected possitions of eukaryote sequences with an endosymbiotic origin (indicated as CYANOBACTERIA and MITOCHONDRIA).
DOI: 10.6084/m9.figshare.177727.v1
title: File S2

description: R scripts used in this study.