cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22714978
title: lncNALT knockdown ameliorates hypertensive retinopathy via PTEN/PI3K/AKT pathway

description: This study aimed to explore the role of the long non-coding RNA NOTCH1-associated lncRNA in T cell acute lymphoblastic leukemia (lncNALT) in the pathogenesis of hypertensive retinopathy (HR). LncNALT expression levels were determined using reverse transcription-quantitative polymerase chain reaction. The effects of lncNALT knockdown on the viability, proliferation, migration, and invasion of human retinal microvascular endothelial cells (RMECs) were determined via 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide, 5-ethynyl-2’-deoxyuridine staining, and Transwell assays. Protein expression levels were determined using western blotting. We found that lncNALT expression levels were increased in RMECs treated with hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>), while the knockdown of lncNALT rescued the viability, proliferation, migration, and invasion of RMECs treated with H<sub>2</sub>O<sub>2</sub>. Moreover, lncNALT interacted with ELAV like RNA binding protein 1 to affect the phosphatase and tensin homolog (PTEN) expression. Knockdown of lncNALT enhanced the viability, proliferation, migration, and invasion of RMECs via the PTEN/phosphoinositide 3-kinase (PI3K)/serine-threonine kinase (AKT) pathway. Taken together, knockdown of lncNALT enhanced the viability, proliferation, migration, and invasion of RMECs via the PTEN/PI3K/AKT pathway, suggesting that lncNALT could be a potential therapeutic target for patients with HR. lncNALT interacts with HuR to increase the stability and expression levels of the PTENlncNALT regulates HR via the PTEN/PI3K/AKT pathwaylncNALT may be a potential diagnostic biomarker for HR lncNALT interacts with HuR to increase the stability and expression levels of the PTEN lncNALT regulates HR via the PTEN/PI3K/AKT pathway lncNALT may be a potential diagnostic biomarker for HR
DOI: 10.6084/m9.figshare.14843332.v1
title: Additional file 11 of Morphological changes and functional circRNAs screening of rabbit skeletal muscle development

description: Additional file 11: Convergent and divergent primer pairs used for qPCR and PCR amplification.
DOI: 10.6084/m9.figshare.14843347
title: Additional file 5 of Morphological changes and functional circRNAs screening of rabbit skeletal muscle development

description: Additional file 5: Details of all candidate circRNAs and protein coding genes.
DOI: 10.6084/m9.figshare.14843353
title: Additional file 7 of Morphological changes and functional circRNAs screening of rabbit skeletal muscle development

description: Additional file 7: Prediction coding ability of DE-circRNAs.
DOI: 10.6084/m9.figshare.14843430.v1
title: Additional file 5 of Quantitative trait loci (QTL) analysis of leaf related traits in spinach (Spinacia oleracea L.)

description: Additional file 5: Table S5. The number of genes on the three scaffolds related to LL, PL and LR (XLSX)
DOI: 10.6084/m9.figshare.6462146
title: Detail information of differential expressed genes related to chlorophyll metabolic and photosynthesis of grapevine under waterlogging stress. from Analysis of the regulation networks in grapevine reveals response to waterlogging stress and candidate gene-marker selection for damage severity

description: The expression information and functional annotation of differentially regulated genes related to anaerobic fermentation and glycolysis.
DOI: 10.6084/m9.figshare.16417490.v1
title: Additional file 2 of Defining tumor-associated vascular heterogeneity in pediatric high-grade and diffuse midline gliomas

description: Additional file 2 contains data related to transcriptional analysis of endothelial samples from normal brain regions, IUE pHGG and IUE DMG mouse models. Tab1: DEGs comparing DMG vs. pHGG ECs; Tab2: DEGs comparing BS vs. DMG ECs; Tab3: DEGs comparing Ctx vs. pHGG ECs; Tab 4: Pathways enriched in pHGG ECs compared to DMG ECs; Tab5: Pathways enriched in DMG ECs compared to pHGG ECs.
DOI: 10.5281/zenodo.10645537
title: Elizabethan Coastal Surveys, 1565

description: This geolocated dataset derives from several surveys commissioned by the English Crown in 1565, enquiring into the state of the various ports, landing places, and coastal communities of England and Wales.
DOI: 10.5281/zenodo.10647272
title: Elizabethan Coastal Surveys, 1565

description: This geolocated dataset derives from several surveys commissioned by the English Crown in 1565, enquiring into the state of the various ports, landing places, and coastal communities of England and Wales.
DOI: 10.5281/zenodo.10649089
title: Elizabethan Coastal Surveys, 1565

description: This geolocated dataset derives from several surveys commissioned by the English Crown in 1565, enquiring into the state of the various ports, landing places, and coastal communities of England and Wales.
DOI: 10.5281/zenodo.10649094
title: Elizabethan Coastal Surveys, 1565

description: This geolocated dataset derives from several surveys commissioned by the English Crown in 1565, enquiring into the state of the various ports, landing places, and coastal communities of England and Wales.
Please see the GitHub repository for details of the sources used and visualisation of their geographic scope.
DOI: 10.5517/ccdc.csd.cc28zygp
title: CCDC 2115113: Experimental Crystal Structure Determination

description: Related Article: Shan Yang, Biqiong Hong, Jia Feng, Zhenhua Gu|2021|Org.Lett.|23|9179|doi:10.1021/acs.orglett.1c03484
DOI: 10.5517/ccdc.csd.cc291fqj
title: CCDC 2116547: Experimental Crystal Structure Determination

description: Related Article: Miguel Adrián Márquez-Cadena, Wei Zhang, Rongbiao Tong|2021|Org.Lett.|23|9227|doi:10.1021/acs.orglett.1c03559
DOI: 10.5281/zenodo.5784799
title: Profiling of mature stage human breastmilk cells identifies host-defense lactocyte sub-populations

description: Breastmilk is chock-full of nutrients, immunological factors, and cells that aid infant development. Maternal cells are the least studied breastmilk component, and their unique properties are difficult to identify using traditional techniques. Here, we characterized the cells in mature stage breastmilk from healthy donors at the protein, gene, and transcriptome levels. Holistic analysis of flow cytometry, qPCR, and single cell RNA sequencing data identified the predominant cell population as epithelial with smaller populations of macrophages and T cells. Two percent of epithelial cells expressed four stem cell markers: SOX2, TRA-1-60, NANOG, and SSEA4. Furthermore, milk contained six distinct epithelial lactocyte sub-populations, including three previously unidentified sub-populations programmed towards host-defense and intestinal development. Pseudotime analysis delineated the differentiation pathways of epithelial progenitors. Together, these data define healthy human maternal breastmilk cells and provide a basis for their application in maternal and infant medicine.
DOI: 10.5281/zenodo.5784798
title: Profiling of mature stage human breastmilk cells identifies host-defense lactocyte sub-populations

description: Breastmilk is chock-full of nutrients, immunological factors, and cells that aid infant development. Maternal cells are the least studied breastmilk component, and their unique properties are difficult to identify using traditional techniques. Here, we characterized the cells in mature stage breastmilk from healthy donors at the protein, gene, and transcriptome levels. Holistic analysis of flow cytometry, qPCR, and single cell RNA sequencing data identified the predominant cell population as epithelial with smaller populations of macrophages and T cells. Two percent of epithelial cells expressed four stem cell markers: SOX2, TRA-1-60, NANOG, and SSEA4. Furthermore, milk contained six distinct epithelial lactocyte sub-populations, including three previously unidentified sub-populations programmed towards host-defense and intestinal development. Pseudotime analysis delineated the differentiation pathways of epithelial progenitors. Together, these data define healthy human maternal breastmilk cells and provide a basis for their application in maternal and infant medicine.
DOI: 10.25625/xccorh/10khaw
title: Shapefile_polygons_3857.zip

description: University buildings in Göttingen
DOI: 10.25625/xccorh/p2uqby
title: World1880.zip

description: Historic country boundaries. Source: https://web.archive.org/web/20061221071409/http://library.thinkquest.org/C006628/download.html
DOI: 10.25625/xccorh/whbvsj
title: clipped-eight-band.tif

description: A multi-band satellite image. Clipped from different bands available at https://landsat-pds.s3.amazonaws.com/c1/L8/139/045/LC08_L1TP_139045_20170304_20170316_01_T1/index.html
DOI: 10.25625/xccorh/mcp1a3
title: Shapefile_points.zip

description: Some POIs on Göttingen Campus
DOI: 10.25625/xccorh/fmebaa
title: CSVPOIs.tab

description: CSV file with Longitude/Latitude columns
DOI: 10.25625/xccorh/ce9n0y
title: NLCD_2016_Land_Cover.tif

description: Source: https://gisdata.mn.gov/dataset/bc36cf5c-468f-4258-95e8-497a2fb13e43/resource/29881e93-7b10-4754-89fe-c08154e00789
DOI: 10.25625/xccorh/n2pmqz
title: geojsonSample.geojson

description: :unav
DOI: 10.25625/xccorh/vqxnmu
title: kmlSample.kml

description: :unav
DOI: 10.25625/xccorh/wxjvbv
title: example_4269.geotiff

description: A small Geotiff in 4269 projection. Source: https://github.com/GeoTIFF/georaster-layer-for-leaflet-example
DOI: 10.26182/ph8n-yv07
title: An Approach to defining and achieving restoration targets for a threatened plant community
DOI: 10.5281/zenodo.5785240
title: Delete Me - Incorrect upload

description: This version contains incorrect files.
DOI: 10.23728/b2share.b97841e33796483aaeb76753741ae1ce
title: Efficient few-cycle Yb-doped laser oscillator with Watt-level average power

description: Data sets of the paper entitled "Efficient few-cycle Yb-doped laser oscillator with Watt-level average power," F. Labaye et al., published in the journal Optics Express.
DOI: 10.6084/m9.figshare.16869737.v1
title: JSS-Graph

description: dataset script
DOI: 10.5281/zenodo.5785373
title: Spontaneous parthenogenesis in the parasitoid wasp Cotesia typhae: low frequency anomaly or evolving process?

description: Raw data linked to the manuscript, including phenotyping and genotyping results for all Cotesia typhae females analyzed in this study.
DOI: 10.34808/nm1x-vc61
title: Pruszcz Gdański 2019- video data

description: Pruszcz Gdański 2019- video data
The data contain video traffic data (pedestrian, cyclists, vehicles) registered at 41 intersections.
The video camera was installed around bicycle and pedestrian crossings at the intersection. Camera was mounted on 7-meter-high mast. Recording date 05.2019. 

Location of intersections:

  

Sample view of the video material:
DOI: 10.34808/q4br-e667
title: DK16 Mrągowo-Ełk 2017- video data

description: DK16 Mrągowo-Ełk 2017-  video data
The aim of the study is to prepare detailed analyses and traffic forecasts in assumed time horizons (i.e. years 2025-2055) for national road No. 16 on the section between Mrągowo and Ełk.
The study took place on 11/30/2017, on a typical weekday, at twenty-three locations:- intersections: time interval 6 a.m. - 8 a.m. : 2 p.m. - 5 p.m,- crossroads: 12h/24h interval.
The video camera was installed at the intersections. Camera was mounted on 7-meter-high mast. 

Location of intersections:

  

Sample view of the video material:

    

Summary of road traffic and HGV share at individual intersections:
DOI: 10.34740/kaggle/dsv/2933377
title: AutoXGB
DOI: 10.6084/m9.figshare.17206709
title: UGENE project_DATABASE_All participants.xlsx

description: Contribution of <i>UCP1</i> single nucleotide polymorphisms (SNPs) to susceptibility for cardiometabolic pathologies (CMP) and their involvement in specific risk factors for these conditions varies across populations. We tested whether <i>UCP1</i> SNPs A-3826G, A-1766G, Ala64Thr and A-112C are associated with common CMP and their risk factors across Armenia, Greece, Poland, Russia and United Kingdom. This case-control study included genotyping of these SNPs, from 2,283 Caucasians. Results were extended via systematic review and meta-analysis. In Armenia, GA genotype and A allele of Ala64Thr displayed ~2-fold higher risk for CMP compared to GG genotype and G allele, respectively (p&lt;0.05). In Greece, A allele of Ala64Thr decreased risk of CMP by 39%. Healthy individuals with A-3826G GG genotype and carriers of mutant allele of A-112C and Ala64Thr had higher body mass index compared to those carrying other alleles. In healthy Polish, higher waist-to-hip ratio (WHR) was observed in heterozygotes A-3826G compared to AA homozygotes. Heterozygosity of A-112C and Ala64Thr SNPs was related to lower WHR in CMP individuals compared to wild type homozygotes (p&lt;0.05). Meta-analysis showed no statistically significant odds-ratios across our SNPs (p&gt;0.05). Concluding, the studied SNPs could be associated with the most common CMP and their risk factors in some populations.<br><b> </b>
DOI: 10.6084/m9.figshare.17206709.v1
title: UGENE project_DATABASE_All participants.xlsx

description: Contribution of <i>UCP1</i> single nucleotide polymorphisms (SNPs) to susceptibility for cardiometabolic pathologies (CMP) and their involvement in specific risk factors for these conditions varies across populations. We tested whether <i>UCP1</i> SNPs A-3826G, A-1766G, Ala64Thr and A-112C are associated with common CMP and their risk factors across Armenia, Greece, Poland, Russia and United Kingdom. This case-control study included genotyping of these SNPs, from 2,283 Caucasians. Results were extended via systematic review and meta-analysis. In Armenia, GA genotype and A allele of Ala64Thr displayed ~2-fold higher risk for CMP compared to GG genotype and G allele, respectively (p&lt;0.05). In Greece, A allele of Ala64Thr decreased risk of CMP by 39%. Healthy individuals with A-3826G GG genotype and carriers of mutant allele of A-112C and Ala64Thr had higher body mass index compared to those carrying other alleles. In healthy Polish, higher waist-to-hip ratio (WHR) was observed in heterozygotes A-3826G compared to AA homozygotes. Heterozygosity of A-112C and Ala64Thr SNPs was related to lower WHR in CMP individuals compared to wild type homozygotes (p&lt;0.05). Meta-analysis showed no statistically significant odds-ratios across our SNPs (p&gt;0.05). Concluding, the studied SNPs could be associated with the most common CMP and their risk factors in some populations.<br><b> </b>
DOI: 10.5517/ccdc.csd.cc291frk
title: CCDC 2116548: Experimental Crystal Structure Determination

description: Related Article: Miguel Adrián Márquez-Cadena, Wei Zhang, Rongbiao Tong|2021|Org.Lett.|23|9227|doi:10.1021/acs.orglett.1c03559
DOI: 10.5517/ccdc.csd.cc291fzs
title: CCDC 2116555: Experimental Crystal Structure Determination

description: Related Article: Miguel Adrián Márquez-Cadena, Wei Zhang, Rongbiao Tong|2021|Org.Lett.|23|9227|doi:10.1021/acs.orglett.1c03559
DOI: 10.5517/ccdc.csd.cc291g50
title: CCDC 2116561: Experimental Crystal Structure Determination

description: Related Article: Miguel Adrián Márquez-Cadena, Wei Zhang, Rongbiao Tong|2021|Org.Lett.|23|9227|doi:10.1021/acs.orglett.1c03559
DOI: 10.5517/ccdc.csd.cc28q56d
title: CCDC 2106673: Experimental Crystal Structure Determination

description: Related Article: Qiuming Liang, Datong Song|2021|Organometallics|40|3943|doi:10.1021/acs.organomet.1c00515
DOI: 10.6084/m9.figshare.17211872
title: TSWB

description: TSWB
DOI: 10.6084/m9.figshare.17211872.v1
title: TSWB

description: TSWB
DOI: 10.5281/zenodo.5785455
title: Post-50 Ma evolution of India-Asia collision zone from paleomagnetic and GPS data: Greater India indentation to eastward Tibet flow

description: Review of paleomagnetic data from Tibet and N Indochina, supporting the paper "Post-50 Ma evolution of India-Asia collision zone from paleomagnetic and GPS data: Greater India indentation to eastward Tibet flow".
description: Review of the Jurassic to Holocene paleomagnetic data from Tibet and North Indochina. D and I are site mean declination and inclination calculated before and after tectonic correction; α95 is a statistical parameter after Fischer (1953). Site mean rotation R and flattening F values and relative errors ΔR and ΔF (according to Demarest, 1983) are relative to coeval D and I values expected at the sampling area considering East‐Asia paleopoles from Cogné et al. (2013), except 140 to 180 Ma from Eurasia paleopoles from Torsvik et al. (2012). Field tests are defined as positive (+), negative (-), or undetermined (u). Paleomagnetic data file compiled from literature, following references reported in the main text.
DOI: 10.5281/zenodo.5785454
title: Post-50 Ma evolution of India-Asia collision zone from paleomagnetic and GPS data: Greater India indentation to eastward Tibet flow

description: Review of paleomagnetic data from Tibet and N Indochina, supporting the paper "Post-50 Ma evolution of India-Asia collision zone from paleomagnetic and GPS data: Greater India indentation to eastward Tibet flow".
description: Review of the Jurassic to Holocene paleomagnetic data from Tibet and North Indochina. D and I are site mean declination and inclination calculated before and after tectonic correction; α95 is a statistical parameter after Fischer (1953). Site mean rotation R and flattening F values and relative errors ΔR and ΔF (according to Demarest, 1983) are relative to coeval D and I values expected at the sampling area considering East‐Asia paleopoles from Cogné et al. (2013), except 140 to 180 Ma from Eurasia paleopoles from Torsvik et al. (2012). Field tests are defined as positive (+), negative (-), or undetermined (u). Paleomagnetic data file compiled from literature, following references reported in the main text.
DOI: 10.5281/zenodo.5785466
title: Stromboli 2016

description: The dataset consists in 57 infrasuond signals with 15 seconds long related to Strombolian explosion recorded at 14 stations at Stromboli Volcano. For each event has been created a matlab file named with time in UTM of the first value of time window of the infrasound signal; each matlab file contains the following variable: <em>P</em>: Pressure matrix in Pascal (14 rows x 1500 columns), each row corresponds at the infrasound signal recorded at each of the 14 stations, the name of station corresponding at the infrasound signal can be found at the same index in the vector ‘’namestz’’. <em>time</em>: is the vector time in UTM (1 row x 1500 columns)<br> <em>namestz</em>: Contains the name of the 14 stations. The name of the stations are organized in the same order of the 14 rows in the pressure matrix (P) <em>smp</em>: is the sampling rate <em>Lon</em>: Longitude of stations, the name of station corresponding at the longitude value can be found at the same index in the vector ‘’namestz’’. <em>Lat</em>: Latitude of stations, the name of station corresponding at the latitude value can be found at the same index in the vector ‘’namestz’’.
description: The work was supported by Italian Department of Civil protection (Devnet Project)
DOI: 10.5281/zenodo.5785465
title: Stromboli 2016

description: The dataset consists in 57 infrasuond signals with 15 seconds long related to Strombolian explosion recorded at 14 stations at Stromboli Volcano. For each event has been created a matlab file named with time in UTM of the first value of time window of the infrasound signal; each matlab file contains the following variable: <em>P</em>: Pressure matrix in Pascal (14 rows x 1500 columns), each row corresponds at the infrasound signal recorded at each of the 14 stations, the name of station corresponding at the infrasound signal can be found at the same index in the vector ‘’namestz’’. <em>time</em>: is the vector time in UTM (1 row x 1500 columns)<br> <em>namestz</em>: Contains the name of the 14 stations. The name of the stations are organized in the same order of the 14 rows in the pressure matrix (P) <em>smp</em>: is the sampling rate <em>Lon</em>: Longitude of stations, the name of station corresponding at the longitude value can be found at the same index in the vector ‘’namestz’’. <em>Lat</em>: Latitude of stations, the name of station corresponding at the latitude value can be found at the same index in the vector ‘’namestz’’.
description: The work was supported by Italian Department of Civil protection (Devnet Project)
DOI: 10.14457/cu.the.2013.1987
title: The effect of chelating agent Type on equilibrium solubility of calcium and magnesium soap scum in different surfactant systems
DOI: 10.14457/cu.the.2013.1988
title: Understanding the mechanism of barium sulfate deposition using capillary flow
DOI: 10.6084/m9.figshare.11283758.v5
title: Global Hydropower Database (GHD) and hydroelectricity production (HP) model

description: 1. GHD comprises 8716 hydropower plants distributed across 134 countries. The detailed description can be found in the Supplementary and the main text of the following article:Wan W, Zhao J, Popat E, Herbert C, Döll P. Analyzing the Impact of Streamflow Drought on Hydroelectricity Production: A Global-Scale Study. Water Resources Research. 2021, 4(57):e2020WR028087.<br><br>We kindly ask users to cite this article in any published material produced using the GHD.<br>2. 0.5° global drainage direction map DDM30 (Döll & Lehner, 2002)3. R script of hydroelectricity production model4. Other .nc file used<br>
DOI: 10.6084/m9.figshare.17104380
title: Dataset S1 from A Carboniferous synapsid with caniniform teeth and a reappraisal of mandibular size-shape heterodonty in the origin of mammals

description: Excel spreadsheet containing specimen information, raw measurements, PCA results, and body size estimates.
DOI: 10.6084/m9.figshare.17104380.v1
title: Dataset S1 from A Carboniferous synapsid with caniniform teeth and a reappraisal of mandibular size-shape heterodonty in the origin of mammals

description: Excel spreadsheet containing specimen information, raw measurements, PCA results, and body size estimates.
DOI: 10.6084/m9.figshare.17104386
title: Dataset S2 from A Carboniferous synapsid with caniniform teeth and a reappraisal of mandibular size-shape heterodonty in the origin of mammals

description: NEXUS file.
DOI: 10.6084/m9.figshare.17104386.v1
title: Dataset S2 from A Carboniferous synapsid with caniniform teeth and a reappraisal of mandibular size-shape heterodonty in the origin of mammals

description: NEXUS file.
DOI: 10.5281/zenodo.5784638
title: Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 500m Y19 & Y20

description: A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 500m particles releases for the years 2014 (Y19) and 2015 (Y20).
DOI: 10.5281/zenodo.5784637
title: Lagrangian Sequestration Efficiency Trajectories and Extracted Particle Metrics – 500m Y19 & Y20

description: A dataset of Lagrangian trajectories used to estimate North Atlantic sequestration efficiency and extracted metrics for the re-entrained and sequestered particles. All variables have long names and units. These files have been used for the analysis in Baker et al. ‘Biological carbon pump sequestration efficiency in the North Atlantic: a leaky or a long-term sink?’ with further information about the methodology available in the paper. Due to the size of the datasets, each DOI only contains two files. This dataset contains the 500m particles releases for the years 2014 (Y19) and 2015 (Y20).