cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.4288j/23
title: Supplemental File 14

description: PN backbone network session with shared TFs in middle
DOI: 10.5061/dryad.42d2r/2
title: Tamburini et al. Flowering duration

description: Flowering duration
DOI: 10.5061/dryad.56b81/1
title: Wog Wog skink stable isotope data

description: Collection information and d13C, d15N, [C], and [N] for muscle and liver tissues of pale-flecked garden sunskink (Lampropholis guichenoti) from Wog Wog habitat fragmentation experiment. See paper and readme for further details.
DOI: 10.5061/dryad.56b81/2
title: Wog Wog skink gut contents

description: Prey orders found in guts of pale-flecked garden sunskink (Lampropholis guichenoti) from Wog Wog habitat fragmentation experiment. 0 = absences, 1 = presence. See paper and readme for further details.
DOI: 10.5061/dryad.6200g/6
title: Simulation outputs for T2W2 scenarios

description: Individual genotype, location and environment outputs fro T2W2 simulation scenarios
DOI: 10.5061/dryad.6200g/7
title: R script for basic genetic diversity summary statistics

description: The file contains an R script to calculate the basic genetic diversity summary statistics across the landscape for each replicate simulation. This doesn't recreate all the analyses in the paper, but has been included to provide a script to extract the same genetic information that we used for further analysis in the paper.
DOI: 10.5061/dryad.66s9h/2
title: Hist_10000_Chars

description: The number of incorrect nodes found within each consensus subtracted from the number of correct nodes found tree within the same consensus trees constructed from 100 replicate matrices of 10000 morphological characters.
DOI: 10.5061/dryad.66s9h/3
title: Mol_Only

description: Majority rule (MRC), maximum a posteriori (MAP), and maximum clade credibility (MCC) consensus trees for Hymenoptera constructed from a posterior sample of trees obtained when only molecularl data was analysed.
DOI: 10.5061/dryad.66s9h/4
title: Combined

description: Majority rule (MRC), maximum a posteriori (MAP), and maximum clade credibility (MCC) consensus trees for Hymenoptera constructed from a posterior sample of trees obtained when both morphological and molecular data were analysed.
DOI: 10.5061/dryad.66s9h/5
title: BoxPlot_1000_Chars

description: The number and proportion of correct and incorrect clades presented in consensus trees constructed from 100 replicate matrices of 1000 simulated characters.
DOI: 10.5061/dryad.66s9h/6
title: BoxPlot_10000_Chars

description: The number and proportion of correct and incorrect clades presented in consensus trees constructed from 100 replicate matrices of 10000 simulated characters.
DOI: 10.5061/dryad.66s9h/7
title: Generator_tree

description: Tree used to simulate data
DOI: 10.5061/dryad.825ff/1
title: Appendix S1

description: Average dimensions and ratios of ventral valve of Eohadrotreta zhenbaensis from the Cambrian (Series 2) Shuijingtuo Formation of the Three Gorges area, South China, demonstrating the three ontogenetic development stages respectively.
DOI: 10.5061/dryad.825ff/2
title: Appendix S2

description: Average dimensions and ratios of ventral and dorsal valves of Eohadrotreta zhenbaensis from the Cambrian (Series 2) Shuijingtuo Formation of the Three Gorges area, South China, demonstrating the three ontogenetic development stages respectively, including the whole ontogenetic development stages.
DOI: 10.5061/dryad.825ff/3
title: Appendix S3

description: Average dimensions and ratios of ventral valve of Eohadrotreta? zhujiahensis from the Cambrian (Series 2) Shuijingtuo Formation of the Three Gorges area, South China, demonstrating the three ontogenetic development stages respectively.
DOI: 10.5061/dryad.825ff/4
title: Appendix S4

description: Average dimensions and ratios of ventral and dorsal valves of Eohadrotreta? zhujiahensis from the Cambrian (Series 2) Shuijingtuo Formation of the Three Gorges area, South China, including the whole ontogenetic development stages.
DOI: 10.5061/dryad.8c1vd/1
title: Nieriä_data_Dryad

description: Arctic charr data from experiments conducted in Enonkoski in 2005.
DOI: 10.5061/dryad.91cm1/1
title: Detailed data of the article

description: in vitro and in vivo data
DOI: 10.5061/dryad.fv8h6/1
title: flgK_ring_final

description: Structural model of the complete FlgKcj ring
DOI: 10.5061/dryad.fv8h6/2
title: mixed_ring_final

description: Structural model of the interface of the FlgKcj ring and FlgEcj ring
DOI: 10.5061/dryad.gm073.1/1.1
title: Raw hapmap file

description: Illumina Hi-Seq data
DOI: 10.5061/dryad.gm073.1/2.1
title: nam_composite
DOI: 10.5061/dryad.gm073.1/3.1
title: genotypes_lubbock
DOI: 10.5061/dryad.gm073.1/4.1
title: genotypes_weslaco
DOI: 10.5061/dryad.gm073.1/5.1
title: genotypes_grin
DOI: 10.5061/dryad.gm073.1/6.1
title: geno_sap60K
DOI: 10.5061/dryad.gm073.1/7.1
title: geno_nam60K
DOI: 10.5061/dryad.gm073.1/8.1
title: geno_grin60K
DOI: 10.5061/dryad.jv37v/1
title: DATA of mating pairs from 32 samples in L. saxatilis

description: The data provide size distribution of male (size1) and female (size2) in Littorina saxatilis mating pairs from 32 samples (pop). The samples are classified in two groups (area), those representing bimodal populations with tw ecotypes living in sympatry and able to meet for mating (area 1) and those living in unimodal populations with only one ecotype present. For every mating pair the ecotype type of each sex, mor1 (for male) and mor2 (for female) is also provided (1 shelter, 2 intermediate and 3 exposed ecotypes).
DOI: 10.5061/dryad.mg152/1
title: Head morphology

description: To characterize head structure in snakes of Thamnophis melanogaster (crayfish-eating and non-crayfish-eating individuals), Thamnophis eques, Regina grahamii and R. septemvittata, we measured (1) jaw length (distance from the posterior edge of the posterior-most supralabial scale to the anterior tip of the rostrum), (2) head length (distance from the snout tip to the posterior-most portion of the parietal bone), (3) head width (widest part measured while applying pressure on the posterior portion of the head to spread the quadrates and mandibles laterally), and (4) number of maxillary teeth.
DOI: 10.5061/dryad.n9h1g/1
title: AFLP_chamaedaphne calyculata
DOI: 10.5061/dryad.n9h1g/2
title: AFLP_linnaea borealis ssp. borealis
DOI: 10.5061/dryad.n9h1g/3
title: AFLP_pedicularis sceptrum carolinum ssp. sceptrum carolinum
DOI: 10.5061/dryad.n9h1g/4
title: Pedicularis sceptrum-carolinum ssp. sceptrum-carolinum_MaxEnt input locations
DOI: 10.5061/dryad.n9h1g/5
title: Linnea borealis ssp. borealis_MaxEnt input locations
DOI: 10.5061/dryad.n9h1g/6
title: Chamedaphne calyculata_MaxEnt input locations
DOI: 10.5061/dryad.n9h1g/7
title: Pedicularis sceptrum-carolinum ssp
DOI: 10.5061/dryad.p2775/1
title: Data from Poysa et al JAV-01424

description: On sheet 1 of this file are given original data for analysis of age at first reproduction and on sheet 2 original data for analysis of relative breeding date at first reproduction.
DOI: 10.5061/dryad.t1rv6/1
title: Seedling mortality data from restoration plantings

description: Data of seedling mortality for 24 endemic Australian rainforest species within a replicated restoration planting experiment over three years.  Data also contains topographical data (slope, aspect, distance from forest).
DOI: 10.5061/dryad.t1rv6/2
title: Species trait data

description: Trait data for species used in restoration experiment.  Data includes: Wood density, seed mass, maximum adult height, successional stage, dispersal vector
DOI: 10.17632/3rxyxrtzrk.1
title: Data for: Density Functional Study of the Thermodynamic Properties and Phase Diagram of the Magnesium Hydride

description: Phase Diagram for Magnesium Hydride Polymorphs
DOI: 10.17632/gn87yzc9jw.2
title: Data for: One disorder out of two orders: synthesis and crystal structures of cation-ordered PbNaF2NO3, anion-ordered Pb2OFNO3, and continuous disordered (Pb, Na)2(O,F)2-deltaNO3 solid solution with Sillén-derived structures

description: Crystallographic information file for Pb2OFNO3, PbNaF2NO3, Pb3NaOF3(NO3)2
DOI: 10.5061/dryad.20h4h/1
title: Choose of fruits by squirrels

description: We collected 30 fruits in each 25 palms (Syagrus romanzoffiana), inside four quadrats.  We found out how many of these fruits had larvae inside and we put all of them back in their respective origin palms. We left these fruits available to squirrels for seven days. After this time, we counted how many fruits have left in each palm and how many fruits with larvae were removed.
DOI: 10.5061/dryad.2dv31/1
title: Rawdata and z-scores for evolved B. thuringiensis clones and populations

description: First spreadsheet shows the original data for killing rate, inhibition of MYBT18247 (247) and MYBT18679 (679) of the evolved Bacillus thuringiensis clones. Data are collected for ancestral, coevolved and adapted clones in technical replicates / experimental runs for the B. thuringiensis strains. For 5 evolved populations per strain and treatment, 5 clones were analyzed. Furthermore, z-scores of evolved clones relative to the data of the ancestral clones are shown. The second spreadsheet shows the raw-data and z-scores of killing rate for the evolved populations (before clone isolation).
DOI: 10.5061/dryad.382k1/1
title: Dataset and list of studies used in the meta-analysis (Appendix S1)
DOI: 10.5061/dryad.3hp02/1
title: TableS1_datatable

description: This data table provides the data necessary to recreate the analyses presented in the Freeman et al. paper in Evolution. The unit of analysis in this study is the "sister pair". Thus, each row in the file provides information for a phylogenetically independent sister pair. The key columns are: 1) Clade (either suboscine or oscine), 2) Overall_Discrimination (the proportion of territories that discriminated against allopatric song; note that for sister pairs where we conducted reciprocal playbacks (how population A responds to song from population B and also how population B responds to song from population A), this value is the average of each unidirectional comparison), and 3) GeneticDistance (uncorrected p-distance in mtDNA).
DOI: 10.5061/dryad.4b287/1
title: Ostrinia furnacalis and O. nubilalis SSR Xinjiang China

description: SSR data on Ostrinia furnacalis and O. nubilalis populations in Xinjiang Province, China.
DOI: 10.5061/dryad.4j5c7/1
title: Supplementary material
DOI: 10.5061/dryad.5167d/1
title: Fig. 6-Supplementary ITS-tree
DOI: 10.5061/dryad.5167d/2
title: Fig. 7-Supplementary LSU tree
DOI: 10.5061/dryad.696js/1
title: agonism.weekly(dryad)

description: Weekly agonism rates and facial coloration measurements for study males (Aim 1)
DOI: 10.5061/dryad.696js/2
title: agonism.dyads(dryad)

description: Agonistic interactions between study males with corresponding coloration measurements for both males (Aim 2)
DOI: 10.5061/dryad.700jf/1
title: 2017_6_30 bmjopen-2017-017430.R1 DATASET for DRYAD

description: patient and medication data
DOI: 10.5061/dryad.78521/1
title: Ttru reference sequence

description: Reference sequence for nuclear genome assembly from Tursiops truncatus.
DOI: 10.5061/dryad.78521/2
title: SNP genotypes

description: Location and variation data for nuclear SNPs used in this study.
DOI: 10.5061/dryad.7rt02/1
title: Behavioral Experiment Data
DOI: 10.5061/dryad.8hs71/1
title: xml data files for BEAST2 analyses

description: xml data files (ddRAD, ddRADeco, RAD, Exon, UCE, Perelman and Finstermeier) used in dated BEAST2 analyses
DOI: 10.5061/dryad.92b1f/1
title: Field_margin_data_fritch_et_al_2017_univariate_analysis

description: Abundance of invertebrates across different experimental treatments of field margins in temperate grassland. See README file for further details.
DOI: 10.5061/dryad.92b1f/2
title: Field_margin_data_fritch_multivariate_analysis

description: Abundance of invertebrates across different experimental treatments of field margins in temperate grassland. See README file for further details.
DOI: 10.5061/dryad.949nc/1
title: Data S1 - Pig Frog Dataset

description: These are the detection data, used in the Pig frog analysis, including (1) all types of detections, (2) true positive detections and (3) false positive detections.
DOI: 10.5061/dryad.949nc/2
title: Data S2 - Green Treefrog

description: These are the detection data, used in the Green treefrog analysis, including (1) all types of detections, (2) true positive detections and (3) false positive detections.
DOI: 10.5061/dryad.949nc/4
title: Model code

description: Code, in BUGS language, to implement the three models presented in the paper.
DOI: 10.5061/dryad.bc0qk/1
title: Lizard habitat use and foraging activity scored from video observations.

description: Each row of the data set represents a single video observation bout of a lizard (n = 87). The data set captures lizard habitat use and foraging activity in treatment and control plots before and after the addition of a seaweed subsidy.
DOI: 10.5061/dryad.f36v6/1
title: Simulations of two chromosome evolutionary dynamics

description: Matlab files for simulations for the rapid adaptation of individuals with two chromosomes and occasional reassortment.  Both stochastic and deterministic simulations are included. Also included are files that were used to visualize the dynamics and make several plots for the associated paper.
DOI: 10.5061/dryad.gm073.1/10.1
title: div_imputed.hmp.txt
DOI: 10.5061/dryad.gm073.1/11.1
title: div_raw.hmp.txt
DOI: 10.5061/dryad.gm073.1/12.1
title: map.composite
DOI: 10.5061/dryad.gm073.1/13.1
title: div_rec_dist.chr_def
DOI: 10.5061/dryad.gm073.1/14.1
title: heterozygosity
DOI: 10.5061/dryad.gm073.1/15.1
title: recombination
DOI: 10.5061/dryad.gm073.1/16.1
title: info_marker_gene
DOI: 10.5061/dryad.gm073.1/17.1
title: monomorphism
DOI: 10.5061/dryad.gm073.1/9.1
title: script_simulation
DOI: 10.5061/dryad.gr756/1
title: Data on plant traits and fruit set of Gentiana pneumonanthe, local environmental context and intensity of seed predation by the butterfly Phengaris alcon
DOI: 10.5061/dryad.j6000/1
title: Supplementary Figure 1
DOI: 10.5061/dryad.j6000/2
title: Supplementary Figure 2
DOI: 10.5061/dryad.j6000/3
title: Appendix A

description: Proof for the success of parsimony under species tree ((((A,B),C),D),E) assuming infinite sites, clock-like evolution, and constant Ne within and across branches.
DOI: 10.5061/dryad.j6k1j/1
title: Data set for Joseph, Emberts, Sasson, and Miller 2017 Evolution

description: This file includes data from two experiments, 1) investment in testes and nearby traits when a weapon is autotomized during development versus when a weapon is not autotomized 2) offspring production for males with and without autotomy. A "READ ME" tab is included in the file that explains all the headers.
DOI: 10.5061/dryad.jk88v/1
title: combined data file for parasitism assays

description: data files for the four parasitism assays (20 v. 25C; 27/23 & 29/25 v. 20C; Endogenous resistance; and X-type+HD assays
DOI: 10.5061/dryad.mt7bh/1
title: Suchley 2017 Ecology and Evolution Data

description: Excel spreadsheet contains 4 tabs. 1) Monthly_Plate_Data: Monthly plate algal coverage, coral polyp count and algal-coral overgrowth data. 2) Coral_Initial_Data: Initial coral area, mass and polyp count. 3) Overall_Calcification: Coral calcification over study period for 6 coral colonies in cages, 6 coral colonies in half cages, and 5 coral colonies on control plates. 4) Light_Data: Light intensity time series for one day in one cage, one half cage and on one control plate.
DOI: 10.5061/dryad.n9h1g/8
title: Chamaedaphne_POPS
DOI: 10.5061/dryad.n9h1g/9
title: MaxEnt_Chamaedaphne calyculata_Linnaea borealis ssp. borealis_Pedicularis sceptrum-carolinum ssp. sceptrum-carolinum_results
DOI: 10.5061/dryad.nh035/1
title: Saanich_TimeSeries_Chemical

description: Chemical bottle data collected from Station S3 (-123.505, 48.59166667) in Saanich Inlet, BC, Canada. This data includes unique geographical coordinates for sampling station (Decimal degrees), Numerical identifier of individual cruises (Numeric string), Date of cruise (YY-MM-DD), Sampling depth (Meters), Oxygen concentration calculated from CTD SBE (Micromolar), Phosphate (Bran Luebbe AutoAnalyser - colorimetric) (Micromolar), Silicate (Bran Luebbe AutoAnalyser - colorimetric) (Micromolar), Nitrate (Bran Luebbe AutoAnalyser - colorimetric) (Micromolar), Average Ammonium (fluorometric) (Micromolar), Average Nitrite (colorimetric) (Micromolar), Average Hydrogen sulfide (colorimetric) (Micromolar), Cell counts value quantified by flow cytometry (Number of cells per millilitre (cells/mL)), Average concentration of Nitrogen gas (headspace) (Micromolar), Standard deviation for Nitrogen gas, Average concentration of Oxygen (headspace) (Micromolar), Standard deviation for Oxygen, Average concentration of Carbon dioxide (headspace) (Micromolar), Standard deviation for Carbon dioxide, Average concentration of Nitrous oxide (headspace or automated purge-and-trap) (Micromolar), Standard deviation for Nitrous oxide, Average concentration of Methane (headspace or automated purge-and-trap) (Nanomolar), Standard deviation for Methane. For detailed description of methods see manuscript.
DOI: 10.5061/dryad.nh035/2
title: Saanich_TimeSeries_CTD_DATA

description: CTD data from Station S3 in Saanich Inlet. This data includes unique geographical coordinates for sampling station (Decimal degrees), Numerical identifier of individual cruises (Numeric string), Date of cruise (YY-MM-DD), CTD pressure measurement in intervals of 1 meter (Decibars), CTD temperature (Celsius degrees), CTD conductivity (Millisiemens per centimetre), CTD fluorometer chlorophyll measurement (Chlorophyll concentration in milligram per cubic meter), CTD transmissometer measurement (Light transmission), CTD Photosintentically active radiation (PAR) measurement (Irradiance), CTD Dissolved oxygen sensor measurement (SBE) (Volts), Oxygen concentration based on CTD Oxygen SBE (Micromolar), CTD salinity measurement at each pressure point (Practical salinity unit), CTD density measurement at each pressure point (Sigma-theta). For detailed description on methods see manuscript.
DOI: 10.5061/dryad.nh035/3
title: Saanich_TimeSeries_Historical_O2_DATA

description: Historical dissolved oxygen winkler measurements at Station S3 in Saanich Inlet from 1953 to 2007. This data includes, geographical coordinates, date (year and month), depth (meters), temperature (celcius degrees), salinity (PSU), density (sigma-theta), oxygen (milliliter per liter and micromolar). For detailed methods see the manuscript.
DOI: 10.5061/dryad.nh035/6
title: Saanich_TimeSeries_Winkler_DATA

description: Dissolved oxygen winkler measurements at Station S3 in Saanich Inlet from 2008-2014. This data includes unique geographical coordinates, date (year and month), depth (meters) and oxygen concentration (micromolar). See manuscript for detailed methods.
DOI: 10.5061/dryad.r3g5s/1
title: Michelangeli et al. Integrating thermal physiology within a syndrome Funct.Ecology

description: This data file contain 4 tabs: The first tab contains data for the thermal characteristics (e.g Vmax) for each individual analysed in the corresponding paper. The second tab contains the behavioural data (e.g. activity) for each individual analysed in the corresponding paper. The third tab contains the raw habitat use data. This data contains information regarding each individuals microhabitat use on each day of their trial period, and also the total of proportion of time each individual spent in each microhabitat over the entire 3-day period. Finally, the fourth tab contains the ibutton data which are the temperature recordings taken in each microhabitat over the entire experimental period. Note - we have not provided the raw thermal characteristics data (i.e. the data involved in calculating the thermal variables). If you would like this data, please contact the corresponding author
DOI: 10.5061/dryad.sc1j0/1
title: UCE_phylip

description: This directory contains a phylip file for each locus in the complete UCE data matrix (n = 2,107 UCE loci). Each file contains aligned sequence data for that UCE locus in phylip format. Taxon names have been shortened to first three letters of genus and first three of the specific epithet (e.g., Arachnothera longirostra = AraLon)
DOI: 10.5061/dryad.sc1j0/2
title: raxml_genetree

description: This directory contains a subdirectory for each UCE locus, and within each subdirectory is the bestTree gene tree for that locus. Trees were produced in RAxML, using a GTR+Gamma substitution model.
DOI: 10.5061/dryad.sr595/1
title: Fig3_All_and_Defective_Statistics

description: Sigma-Plot spreadsheet with the data for Figure 3 of the manuscript. An excel file containing just the data-sheets is also provided under the same name for those with no access to jnb files.
DOI: 10.5061/dryad.sr595/10
title: Fig4a_Data_Excel

description: An excel file containing just the data-sheets provided under the same name for those with no access to jnb files. (Data for figure 4a of the manuscript.)
DOI: 10.5061/dryad.sr595/2
title: Fig4a_Data

description: Sigma-Plot file with data for figure 4a of the manuscript. An excel file containing just the data-sheets is also provided under the same name for those with no access to jnb files.
DOI: 10.5061/dryad.sr595/9
title: Fig3_All_and_Defective_Statistics_Excel

description: An excel file containing just the data-sheets provided under the same name for those with no access to jnb files. (Data for Figure 3 of the manuscript. )
DOI: 10.5061/dryad.t1r3v/1
title: dry segment data from flights of Antarctic albatrosses

description: See README file for data information
DOI: 10.5061/dryad.t1r3v/2
title: Implementation of the negative log likelihood - 1992 style loggers

description: This file implements the negative log-likelihood corresponding to the 1992-style immersion loggers. The file includes examples of fitting parameters of this distribution to flight data. requires "shifted_dists.R"
DOI: 10.5061/dryad.t1r3v/3
title: Implementation of the negative log likelihood - 2004 style loggers

description: This file implements the negative log-likelihood corresponding to the 2004-style immersion loggers. The file includes examples of fitting parameters of this distribution to flight data. requires "shifted_dists.R"
DOI: 10.5061/dryad.t1r3v/4
title: shifted_dists

description: Implementation of the shifted gamma, shifted exponential, pareto, and q-exponential distributions.
DOI: 10.5061/dryad.t1r3v/5
title: model selection for albatross data

description: This file implements the model fitting and model selection procedure for the albatross data found in "albatross_drysegments.csv". Requires: mle_1992.R; mle_2004.R; shifted_dists.R
DOI: 10.5061/dryad.vd0nn.1
title: Data from: Successional status, seed dispersal mode and overstorey species influence tree regeneration in tropical rain-forest fragments in Western Ghats, India
DOI: 10.5061/dryad.vd0nn.2
title: Data from: Successional status, seed dispersal mode and overstorey species influence tree regeneration in tropical rain-forest fragments in Western Ghats, India
DOI: 10.5061/dryad.vd0nn.2/1.2
title: Plots and traits data

description: This zip file contains three data files, corresponding to regeneration plot data, adult tree plot data and tree species traits data reported in Osuri et al. (2017). Successional status, seed dispersal mode and overstorey species influence tree regeneration in tropical rain-forest fragments in Western Ghats, India. Journal of Tropical Ecology, 33(4), 270-284. doi: https://doi.org/10.1017/S0266467417000219
DOI: 10.5061/dryad.vf8sm/1
title: S2CollectionInformation

description: Information regarding collection sites etc. Old codes are used in indexing files this file contains the link between the old and the new codes in the manuscript.
DOI: 10.5061/dryad.vf8sm/2
title: Index for Plates 1-7 MPB

description: Index's for demulitplexing plates. File name indicates plate name. Raw sequencing data is available from NCBI: bioproject PRJNA398557
DOI: 10.5061/dryad.vf8sm/3
title: Raw SNP calls for all samples

description: Raw SNP calls for all samples. Calls made via GATK. File in vcf format