cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23133422
title: Quercus ithaburensis chorology

description: Distribution map of <em>Quercus ithaburensis</em>. <br> <br> <br> These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature. <br> The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn"). <br> Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. <br> An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com). <br> <br> <br> Please cite as: Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br> <br> <br> Additional information and used references are on 'supplementary materials' document: <br> https://doi.org/10.6084/m9.figshare.5091901 <br> <br> <br> Chorological maps are part of the "European Atlas of Forest Tree Species" project: <br> https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.5519/qd.bnkbz7ga
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.7965730
title: SIVA FINAL........Cases.csv

description: <strong>Aspartate Aminotransferase to-Platelet Ratio Index; a reliable Non-Invasive Marker for Liver Cirrhosis – two year case control study at limited resources set up</strong> <strong>This data includes sociodemographic data, laboratory parameters, biochemical characteristics, hospital stay and outcome </strong>
DOI: 10.5281/zenodo.7965729
title: SIVA FINAL........Cases.csv

description: <strong>Aspartate Aminotransferase to-Platelet Ratio Index; a reliable Non-Invasive Marker for Liver Cirrhosis – two year case control study at limited resources set up</strong> <strong>This data includes sociodemographic data, laboratory parameters, biochemical characteristics, hospital stay and outcome </strong>
DOI: 10.5281/zenodo.7965704
title: Phyloseq 16S v3v4 object accompanying paper: Host genotype affects endotoxin release in excreta of broilers at slaughter age

description: This ready to load <strong>phyloseq</strong> R S4 object contains the ASV table, taxonomy table and sample metadata. This data was build using the DaDa2 (version 1.18.0) and phyloseq (version 1.34.0) R packages using the SILVA 138.1 nr99 database and raw MiSeq PE300 sequencing data deposited at NCBI-SRA under BioProject: PRJNA975731. F. Marcato, J.M.J. Rebel, S.K. Kar, I. Wouters, D. Schokker, A. Bossers, F. Harders, J.W. van Riel, M. Wolthuis-Fillerup and I.C. de Jong. The main goal of the current study was to investigate whether or not it was possible to modulate the fecal microbiome and thereby reducing endotoxin concentrations in the excreta of broiler chickens. An experiment was carried out with a 2 x 2 x 2 factorial arrangement including 3 factors, 1) genetic strain (fast-growing Ross 308 vs. slower-growing Hubbard JA757), 2) no vs. combined use of probiotics and prebiotics in the diet and drinking water, 3) early feeding at the hatchery vs. non early feeding. A total of 624 Ross 308 and 624 Hubbard JA757 day-old male broiler chickens were included until d 37 and d 51 of age, respectively. Broilers (26 chicks per pen) were housed in a total of 48 pens, and there were 6 replicate pens/treatment group. Pooled cloacal swabs (10 chickens per pen) for microbiome and endotoxin analyses were collected at a target body weight (BW) of 200 g, 1 kg and 2.5 kg.
DOI: 10.5281/zenodo.7965703
title: Phyloseq 16S v3v4 object accompanying paper: Host genotype affects endotoxin release in excreta of broilers at slaughter age

description: This ready to load <strong>phyloseq</strong> R S4 object contains the ASV table, taxonomy table and sample metadata. This data was build using the DaDa2 (version 1.18.0) and phyloseq (version 1.34.0) R packages using the SILVA 138.1 nr99 database and raw MiSeq PE300 sequencing data deposited at NCBI-SRA under BioProject: PRJNA975731. F. Marcato, J.M.J. Rebel, S.K. Kar, I. Wouters, D. Schokker, A. Bossers, F. Harders, J.W. van Riel, M. Wolthuis-Fillerup and I.C. de Jong. The main goal of the current study was to investigate whether or not it was possible to modulate the fecal microbiome and thereby reducing endotoxin concentrations in the excreta of broiler chickens. An experiment was carried out with a 2 x 2 x 2 factorial arrangement including 3 factors, 1) genetic strain (fast-growing Ross 308 vs. slower-growing Hubbard JA757), 2) no vs. combined use of probiotics and prebiotics in the diet and drinking water, 3) early feeding at the hatchery vs. non early feeding. A total of 624 Ross 308 and 624 Hubbard JA757 day-old male broiler chickens were included until d 37 and d 51 of age, respectively. Broilers (26 chicks per pen) were housed in a total of 48 pens, and there were 6 replicate pens/treatment group. Pooled cloacal swabs (10 chickens per pen) for microbiome and endotoxin analyses were collected at a target body weight (BW) of 200 g, 1 kg and 2.5 kg.
DOI: 10.5281/zenodo.4109999
title: Studio esplorativo sulle pratiche basate sui dati nella didattica universitaria: il caso dell'Università di Padova

description: Il presente report introduce uno studio di caso (Ateneo di Padova) relativamente alle pratiche basate sui dati nella didattica universitaria. Specificamente, lo studio introduce i risultati di un’indagine su un questionario composto da 21 domande. Le pratiche basate sui dati erano suddivise in 6 scale: EDMQ (Educational Data use for Management and Quality) - Uso dei dati da diverse fonti per informare i processi istituzionali, la collaborazione e la costruzione di conoscenza accademica a supporto della didattica, inclusa la ricerca. DER (Data as Educational Resources) - Uso dei dati come risorse di apprendimento. Adozione di dati provenienti dalla propria ricerca o dati aperti pubblici per orientare e supportare attività di apprendimento. DTL (Data supporting Teaching and Learning) - Didattica informata dai dati digitali. Decisione docente, monitoraggio di processi di apprendimento e feed-back con uso di dati digitali dai sistemi adottati per la didattica. DA (Data supporting Assessment) - Valutazione informata dai dati digitali. Decisione docente e analisi dei percorsi formativi compiuti a partire da dati ottenuti/estratti tramite piattaforme digitali. SED (Students’ Empowerment through Data) - Potenziamento degli Studenti. Coinvolgimento degli studenti nella comprensione della propria partecipazione e dei propri processi di apprendimento a partire dagli ecosistemi di dati generati dagli ambienti di didattica a distanza. SDL (Students’ Data Ltieracy) - Alfabetizzazione (degli studenti) ai dati. Azioni didattiche mirate allo sviluppo di conoscenza e skills tecniche, grafiche, multimediali, critiche ed estetiche sull’uso dei dati nei contesti di vita e professionali. Hanno partecipato all’indagine 370 docenti dell’ateneo patavino. I dati sono stati elaborati a partire di tecniche di statistica descrittiva e di riduzione dimensionale statistica (analisi delle componenti principali o <em>principal component analysis</em>) per l’approfondimento esplorativo. Il dataset (in progress) include attualmente i documenti di sintesi dello studio Report completo (include metodo, statistiche descrittive, interpretazione della PCA) Allegato I: Struttura del Questionario e descrizione delle pratiche basate sui dati Allegato II: Analisi Correlazionale previo alla PCA Allegato III: Tabelle di sintesi della PCA
DOI: 10.5281/zenodo.4110000
title: Studio esplorativo sulle pratiche basate sui dati nella didattica universitaria: il caso dell'Università di Padova

description: Il presente report introduce uno studio di caso (Ateneo di Padova) relativamente alle pratiche basate sui dati nella didattica universitaria. Specificamente, lo studio introduce i risultati di un’indagine su un questionario composto da 21 domande. Le pratiche basate sui dati erano suddivise in 6 scale: EDMQ (Educational Data use for Management and Quality) - Uso dei dati da diverse fonti per informare i processi istituzionali, la collaborazione e la costruzione di conoscenza accademica a supporto della didattica, inclusa la ricerca. DER (Data as Educational Resources) - Uso dei dati come risorse di apprendimento. Adozione di dati provenienti dalla propria ricerca o dati aperti pubblici per orientare e supportare attività di apprendimento. DTL (Data supporting Teaching and Learning) - Didattica informata dai dati digitali. Decisione docente, monitoraggio di processi di apprendimento e feed-back con uso di dati digitali dai sistemi adottati per la didattica. DA (Data supporting Assessment) - Valutazione informata dai dati digitali. Decisione docente e analisi dei percorsi formativi compiuti a partire da dati ottenuti/estratti tramite piattaforme digitali. SED (Students’ Empowerment through Data) - Potenziamento degli Studenti. Coinvolgimento degli studenti nella comprensione della propria partecipazione e dei propri processi di apprendimento a partire dagli ecosistemi di dati generati dagli ambienti di didattica a distanza. SDL (Students’ Data Ltieracy) - Alfabetizzazione (degli studenti) ai dati. Azioni didattiche mirate allo sviluppo di conoscenza e skills tecniche, grafiche, multimediali, critiche ed estetiche sull’uso dei dati nei contesti di vita e professionali. Hanno partecipato all’indagine 370 docenti dell’ateneo patavino. I dati sono stati elaborati a partire di tecniche di statistica descrittiva e di riduzione dimensionale statistica (analisi delle componenti principali o <em>principal component analysis</em>) per l’approfondimento esplorativo. Il dataset (in progress) include attualmente i documenti di sintesi dello studio Report completo (include metodo, statistiche descrittive, interpretazione della PCA) Allegato I: Struttura del Questionario e descrizione delle pratiche basate sui dati Allegato II: Analisi Correlazionale previo alla PCA Allegato III: Tabelle di sintesi della PCA
DOI: 10.5281/zenodo.7965766
title: SIVA FINAL THESIS ..........controls.csv

description: This data includes controls - sociodemographic factors, lab parameters, biochemical characteristics, hospital stay and outcome
DOI: 10.5281/zenodo.7965765
title: SIVA FINAL THESIS ..........controls.csv

description: This data includes controls - sociodemographic factors, lab parameters, biochemical characteristics, hospital stay and outcome
DOI: 10.6084/m9.figshare.21370560
title: The plant nuclear lamina disassembles to regulate plant genome folding in stress conditions

description: The nuclear lamina (NL) is a complex network of nuclear lamins and lamin-associated nuclear membrane proteins, which scaffold the nucleus to maintain structural integrity. In <em>Arabidopsis</em> thaliana, Nuclear Matrix Constituent Proteins (NMCPs) are essential components of the NL and are required to maintain the structural integrity of the nucleus and specific perinuclear chromatin anchoring. At a chromosomal level, plant chromatin organization in interphase nuclei displays flexibilities. Many developmental cues and environmental factors, such as dedifferentiation, leaf development, seedling growth, floral transition, seed development, light intensity, microbe infection, and temperature stress, can trigger global rearrangement of chromatin, demonstrating a tight connection between the structural arrangement of chromatin and its activities. Based on these observations from <em>Arabidopsis</em>, and given the role of AtNMCP genes (CRWN1 and CRWN4) in organizing chromatin positioning at the nuclear periphery, one can expect considerable changes in chromatin-NL interactions when the global chromatin organization patterns are being altered in plants. In this study, we show that plant nuclear lamina disassembles substantially under various stress conditions. By focusing on heat stress, we reveal that chromatin domains, initially tethered to the nuclear envelope, remain largely associated with CRWN1 and became scattered in the inner nuclear space. Via investigating the three-dimensional chromatin contact network, we further reveal that CRWN1 proteins play a structural role, shaping changes in genome folding under heat stress. Also, CRWN1 acts as a negative transcriptional co-regulator to modulate the shift of the plant transcriptome profile in response to heat stress. <br> Here files of large datasets associated with this study, such as Hi-C matrices and ChIP-seq track files in 100 bp bin size, and BigWig files, are available for downloading. <br>
DOI: 10.6084/m9.figshare.23134787
title: Supporting_Information_Chapter2_PhD-Thesis_Testa.A.

description: Supporting_Information_Chapter2_PhD-Thesis_Testa.A.
DOI: 10.6084/m9.figshare.23134787.v1
title: Supporting_Information_Chapter2_PhD-Thesis_Testa.A.

description: Supporting_Information_Chapter2_PhD-Thesis_Testa.A.
DOI: 10.57841/casdc.0001019
title: 热力学温度原级装备测量数据集
DOI: 10.6084/m9.figshare.23135114
title: fig 5.xlsx

description: <strong>Physical exercise reshapes E/I balance of BLA neurons innervated by mPFC</strong>
DOI: 10.6084/m9.figshare.23135114.v1
title: fig 5.xlsx

description: <strong>Physical exercise reshapes E/I balance of BLA neurons innervated by mPFC</strong>
DOI: 10.6084/m9.figshare.23135093
title: fig 2.xlsx

description: <strong>Inhibition of mPFC-BLA circuit mimicked exercise effect of anxiolysis</strong>
DOI: 10.6084/m9.figshare.23135093.v1
title: fig 2.xlsx

description: <strong>Inhibition of mPFC-BLA circuit mimicked exercise effect of anxiolysis</strong>
DOI: 10.5519/qd.snhjphhx
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1001 records)
DOI: 10.5519/qd.bsucrxdz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (140485 records)
DOI: 10.5281/zenodo.7965793
title: Data set and classification method for low quality web traffic identification in video marketing campaigns

description: Final outcomes of the InPreVi (AI4Media) project developed in 2022. 1. Data set describing the statistics of the video ad marketing campaigns 2. Script for web traffic classification
DOI: 10.5281/zenodo.7965792
title: Data set and classification method for low quality web traffic identification in video marketing campaigns

description: Final outcomes of the InPreVi (AI4Media) project developed in 2022. 1. Data set describing the statistics of the video ad marketing campaigns 2. Script for web traffic classification
DOI: 10.5517/ccdc.csd.cc285ngl
title: CCDC 2090809: Experimental Crystal Structure Determination

description: Related Article:  Ning-Fang Li, Xi-Ming Luo, Jia Wang, Ji-Lei Wang, Hua Mei, You Song, Yan Xu|2022|Sci.China.Chem.|65|1577|doi:10.1007/s11426-022-1259-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc285nhm
title: CCDC 2090810: Experimental Crystal Structure Determination

description: Related Article:  Ning-Fang Li, Xi-Ming Luo, Jia Wang, Ji-Lei Wang, Hua Mei, You Song, Yan Xu|2022|Sci.China.Chem.|65|1577|doi:10.1007/s11426-022-1259-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bsh3r
title: CCDC 2168484: Experimental Crystal Structure Determination

description: Related Article: Dodda Bhargavi, Srihari Konduri, Jyothi Prashanth, Sowjanya Pulipati, K. K. Praneeth, Malladi Sireesha, Koya Prabhakara Rao|2023|RSC Advances|13|13540|doi:10.1039/D3RA00713H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2902gw
title: CCDC 2115237: Experimental Crystal Structure Determination

description: Related Article: Chen Lian, Hai-Lou Li, Guo-Yu Yang|2022|Inorg.Chem.|61|11335|doi:10.1021/acs.inorgchem.2c01499
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.4121/22203463.v1
title: Data from: Early detection of phytophthora using hyperspectral imaging pot-tuber experiment

description: In this experiment 3 x 15 potato plants were inoculated with phytophthora infestance and imaged with a hyperspectral camera. Along with that the plants where observed by an expert.
DOI: 10.5281/zenodo.7965859
title: Datasets

description: Datasets for the paper
DOI: 10.5281/zenodo.7965858
title: Datasets

description: Datasets for the paper
DOI: 10.25747/k9f6-kt23
title: Research image management practices reported by scientific literature: Studies that explore the use and production of images in research
DOI: 10.5281/zenodo.7965757
title: Anonymous NeurIPS submission [2970]

description: Anonymous NeurIPS submission for ID [2970]
DOI: 10.5281/zenodo.7965756
title: Anonymous NeurIPS submission [2970]

description: Anonymous NeurIPS submission for ID [2970]
DOI: 10.5281/zenodo.7892460
title: Diachronic and diatopic word embeddings from newspapers digitised by the British Library (1830-1889): North and South England

description: Diachronic word embeddings (decade-level) trained with Word2Vec (via Gensim) on different geographic subcorpora of the Heritage Made Digital British and the Living with Machines historical newspaper collections: - North England (north.zip) - South England (south.zip) At the moment, for each subcorpus, Word2Vec models are available for each decade in the period 1830-1889. More models are on the way for the following: - each decade in the periods 1780-1829 and 1890-1920 for both North and South England. - diachronic models for the following regions: Scotland, Wales, and Midlands. The models were trained using the following parameters: <pre><code>sg = True min_count = 1 window = 5 vector_size = 200 epochs = 5</code></pre> Like the embeddings in this repository, the model for each decade was aligned to the most recent one with Orthogonal Procrustes. See related GitHub repository for the full documentation: https://github.com/Living-with-machines/DiachronicEmb-BigHistData. Project website (Living with Machines): https://livingwithmachines.ac.uk/ Data related to: Nilo Pedrazzini & Barbara McGillivray, <em>Diachronic and diatopic word embeddings from British historical newspapers</em>, presented at AIUCD (Convegno dell’Associazione per l’Informatica Umanistica e la Cultura Digitale) in Siena (Italy), June 2023.
description: {"references": ["Pedrazzini, Nilo and Barbara McGillivray. 2022. Machines in the media: semantic change in the lexicon of mechanization in 19th-century British newspapers. In Proceedings of the 2nd International Workshop on Natural Language Processing for Digital Humanities, pages 85\u201395, Taipei, Taiwan. Association for Computational Linguistics.", "\u0158eh\u016f\u0159ek, Radim and Petr Sojka. 2010. Software Framework for Topic Modelling with Large Corpora. In Proceedings of the LREC 2010 Workshop on New Challenges for NLP Frameworks, pages 45\u2013 50, Valletta, Malta. ELRA. http://is.muni.cz/ publication/884893/en.", "Mikolov, Tomas, Kai Chen, Greg Corrado, and Jeffrey Dean. 2013. Efficient estimation of word representations in vector space."]}
DOI: 10.5281/zenodo.7892459
title: Diachronic and diatopic word embeddings from newspapers digitised by the British Library (1830-1889): North and South England

description: Diachronic word embeddings (decade-level) trained with Word2Vec (via Gensim) on different geographic subcorpora of the Heritage Made Digital British and the Living with Machines historical newspaper collections: - North England (north.zip) - South England (south.zip) At the moment, for each subcorpus, Word2Vec models are available for each decade in the period 1830-1889. More models are on the way for the following: - each decade in the periods 1780-1829 and 1890-1920 for both North and South England. - diachronic models for the following regions: Scotland, Wales, and Midlands. The models were trained using the following parameters: <pre><code>sg = True min_count = 1 window = 5 vector_size = 200 epochs = 5</code></pre> Like the embeddings in this repository, the model for each decade was aligned to the most recent one with Orthogonal Procrustes. See related GitHub repository for the full documentation: https://github.com/Living-with-machines/DiachronicEmb-BigHistData. Project website (Living with Machines): https://livingwithmachines.ac.uk/ Data related to: Nilo Pedrazzini & Barbara McGillivray, <em>Diachronic and diatopic word embeddings from British historical newspapers</em>, presented at AIUCD (Convegno dell’Associazione per l’Informatica Umanistica e la Cultura Digitale) in Siena (Italy), June 2023.
description: {"references": ["Pedrazzini, Nilo and Barbara McGillivray. 2022. Machines in the media: semantic change in the lexicon of mechanization in 19th-century British newspapers. In Proceedings of the 2nd International Workshop on Natural Language Processing for Digital Humanities, pages 85\u201395, Taipei, Taiwan. Association for Computational Linguistics.", "\u0158eh\u016f\u0159ek, Radim and Petr Sojka. 2010. Software Framework for Topic Modelling with Large Corpora. In Proceedings of the LREC 2010 Workshop on New Challenges for NLP Frameworks, pages 45\u2013 50, Valletta, Malta. ELRA. http://is.muni.cz/ publication/884893/en.", "Mikolov, Tomas, Kai Chen, Greg Corrado, and Jeffrey Dean. 2013. Efficient estimation of word representations in vector space."]}
DOI: 10.5281/zenodo.7965869
title: Table S1 supplemental material to COMMSENV-22-1356B manuscript

description: Table S1 supplemental material to COMMSENV-22-1356B manuscript.
DOI: 10.5281/zenodo.7965868
title: Table S1 supplemental material to COMMSENV-22-1356B manuscript

description: Table S1 supplemental material to COMMSENV-22-1356B manuscript.