cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5251fz7j
title: MassIVE MSV000099657 - The screening and identification of SARS-CoV-2 3CL protease inhibitors from Traditional Chinese Medicine using MALDI-TOF-MS
title: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is responsible for the COVID-19 pandemic. The coronavirus 3-chymotrypsin-like cysteine protease (3CLpro) is vital for replicating SARS-CoV-2, as it breaks down polyproteins synthesized from the viral RNA. Therefore, 3CLpro is an important target for drug development to treat SARS-CoV-2 infections. In this study, we established a high-throughput platform for rapidly screening 3CLpro inhibitors derived from 102 Traditional Chinese Medicines (TCMs), utilizing a C18 particle-coated plate and MALDI-TOF-MS technology.
DOI: 10.15468/dl.wmrspw
title: Occurrence Download

description: A dataset containing 1582 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Bothrops asper"
 ]
}

 The dataset includes 1582 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003861-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7rh46
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Suaeda dendroides"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003859-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p99nzk
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Bolitoglossa adspersa",
 "Year 2000-2025"
 ]
}

 The dataset includes 82 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003863-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpzbs5
title: Occurrence Download

description: A dataset containing 214320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Aedes japonicus, Culex orientalis, Culex tritaeniorhynchus, Armigeres subalbatus, Anopheles sinensis, Aedes aegypti, Aedes albopictus)"
 ]
}

 The dataset includes 214320 records from 238 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003845-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7x2hsg
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Thamnodynastes gambotensis Perez-Santos & Moreno, 1989"
 ]
}

 The dataset includes 91 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021103-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.udbxts
title: Occurrence Download

description: A dataset containing 22793929 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 22793929 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012542-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28759376.v1
title: fig 1.docx

description: Transformer-based neural network models have demonstrated remarkable success in handling both text generation tasks and multimodal tasks, such as generating image captions. Over time, advancements in these models have evolved from traditional encoder-decoder architectures to transformer-based systems utilizing vision-language pre-training (VLP). Studies reveal that pre-training significantly enhances the performance of these models, making them highly effective for complex descriptive text generation tasks. However, challenges remain regarding the inclusion of crucial factual information required for accurate comprehension of visual content by individuals with visual impairments. Current models tend to overlook details such as the authorship, dimensions, and stylistic elements of artwork, highlighting the necessity for further refinement of teaching methodologies and model tuning. This paper explores the development and application of transformer models in audio descriptive text generation while discussing key strategies to enhance their performance.
DOI: 10.5281/zenodo.15181391
title: cMF-TVB dataset

description: This dataset has been prepared to support analyses using the cMF-TVB (Cerebellar mean field - The Virtual Brain) platform. It includes all the necessary input data to initialize and run subject-specific brain network models.



SC_<name>: Structural connectivity data  - input of cMF-TVB

ROISignals.txt: Region-specific Experimental BOLD  - used for validation of cMF-TVB


This dataset is intended for researchers interested in running cMF-TVB pipeline. Please cite this dataset using the provided DOI if used in your research.
DOI: 10.5281/zenodo.15181392
title: cMF-TVB dataset

description: This dataset has been prepared to support analyses using the cMF-TVB (Cerebellar mean field - The Virtual Brain) platform. It includes all the necessary input data to initialize and run subject-specific brain network models.



SC_<name>: Structural connectivity data  - input of cMF-TVB

ROISignals.txt: Region-specific Experimental BOLD  - used for validation of cMF-TVB


This dataset is intended for researchers interested in running cMF-TVB pipeline. Please cite this dataset using the provided DOI if used in your research.
DOI: 10.15468/dl.3t2mx2
title: Occurrence Download

description: A dataset containing 871 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "OccurrenceStatus is Present",
 "TaxonKey is Dermochelys coriacea (Vandelli, 1761)",
 "Year 2020-2025"
 ]
}

 The dataset includes 871 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012574-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/4x3-1lc-gp3
title: Oichnus isp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dhz-8bx-2w7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/47z3s4fnzh
title: Nutrient and total dissolved carbon (TOC) concentrations as well as pH in the water column in the Gdańsk Basin (southern Baltic Sea) in summer 2023

description: Concentration of nutrients and total dissolved carbon (TOC) and pH was analyzed in the water column of five stations located in the Gdańsk Basin (southern Baltic Sea). Samples were collected during a cruise aboard the RV Oceanograf (owned by the University of Gdańsk) from July 28 to August 5, 2023. Station depths were 52 m for MET2, 82 m for MET1-MP and MET1-REF, 89 m for MET1-BH and 103 m for ZGG. The MET1-BH station is a small but very active pokmark with strong and concentrated methane outflow, and MET1-MP is an extensive pokmark with diffuse gas outflow. MET2 is shallow gas regular accumulation in close proximity to the coast. The MET-REF and ZGG station represents anaerobic sediment with no signs of gas accumulation in the upper layers. The purpose of the study was to determine whether pH and nutrient concentrations in the water column change as a result of methane from the sediment.
DOI: 10.3535/fgw-wsv-axm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hx9-1r6-lmb
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3558927.v1
title: Appendix L. The deviations of generalized MTE predictions caused by heterogenerity of K-means group.

description: The deviations of generalized MTE predictions caused by heterogenerity of K-means group.
DOI: 10.3535/a76-44r-4s5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zx9-xq7-1kh
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xqc-1v6-dgp
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zpy-q6q-wym
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0fk-y9w-zl2
title: Rhabdinopora sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p0n-n2v-e3z
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pzg-h1z-ad8
title: Calcite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wcv-f9c-4l0
title: Basalt

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/81v-6qn-zh7
title: Pegmatite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8sn-x06-bsc
title: Basalt

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24146916.v1
title: Orginal data from The economy of pollen dispersal in flowering plants

description: Spreadsheet containing data used in the analyses
DOI: 10.3535/pd2-cqk-4a1
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q1r-ztq-8p0
title: †Ungula ingrica (Eichwald, 1829)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7270931.v1
title: OSU Beach and Dune Survey Data from Netarts/Oceanside, Oregon

description: Cross-shore transect data collected with backpack based real-time kinematic GPS was collected of the beach and dune at intervals of daily to ~quarterly as part of surveying efforts aimed at characterizing beach and dune evolution at Netarts Littoral Cell (NLC) in Netarts/Oceanside, Oregon.<br>Landscape measurements published here are in the form of cross-shore transects in XYZ format. The XYZ data represents point data in Oregon State Plane North, with units of meters and a vertical datum of NAVD88 (m).The date of data collection described within the filename.
DOI: 10.6084/m9.figshare.7946498.v1
title: gVCF_NA18544

description: 1000 Genomes gVCF mapped to hs37d5 for NA18544. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.8123924.v2
title: 123.docx

description: dataset for spreadsheet
DOI: 10.3535/gjm-nvx-353
title: Conichnus conicus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/reb-nn9-4mz
title: Conichnus conicus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28620257.v2
title: Corpus of Lake District Writing

description: 80 raw text files of the corpus of lake district writing.
DOI: 10.17632/fb5bsw9tpf
title: Circannual rhythm and chronotype in Obsessive-Compulsive Tic Disorder (OCTD) (Stagionalità TS; PI: M Porta)

description: Raw data of the clinical trial NCT04076852. We tested, through a chronobiologic approach, the existence of a significant circannual rhythm of tics and obsessive-compulsive symptoms in patients with Obsessive-Compulsive Tic Disorder (OCTD). The chronotype effect on tics and OC symptoms during seasons was also studied. The dataset was used to write the article "Exploring circannual rhythms and chronotype effect in patients with Obsessive-Compulsive Tic Disorder (OCTD): A pilot study", which was published by the journal Motor Control in 2021.
DOI: 10.3535/64w-csr-40r
title: Andesite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gxs-tvl-rzc
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11980380.v1
title: Local structure in water and its comparison with hexagonal ice from molecular dynamics simulations of TIP4P/2005 water model

description: Molecular simulations show that liquid water if sufficiently cooled can separate into low-density (tetrahedral) and high-density (non-tetrahedral) forms. We perform molecular dynamics simulations of TIP4P/2005 liquid water at 1 and 1000 bar and in the temperature range 280 to 200 K. Under these conditions we analyse liquid water's local structure and compare it with hexagonal ice. A spherical cut-off is used to collect nearest neighbours of oxygen atoms in the first coordination shell. Local orientational order parameters are then used to characterise the orientation in oxygen and hydrogen atoms in these molecules. At 1 and 1000 bar liquid water which is mostly 4 and 5 coordinated at 280 K becomes 4 coordinated when sufficieintly cooled. Oxygen atoms become more orientationally ordered with cooling and at temperatures less than 230 K its orientation is ice-like. Hydrogens tend to orient out-of-plane with cooling thus allowing the 4 coordinated water to form network like structures. Similar to oxygen ordering, hydrogens also prefer ice-like arrangment with supercooling.
DOI: 10.3535/x7c-xdd-270
title: limestone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zab-egx-jh6
title: Olivine basalt

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/wdg4r2653r
title: Sample data

description: Behavioural data of filtered knowledge contributors on the Zhihu platform
DOI: 10.3535/a80-rrs-bss
title: Basalt

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/frz-d4c-576
title: Conichnus conicus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k4p-f7m-r8s
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p18-xp2-7sj
title: Conichnus conicus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19817452.v1
title: Essay Topics for the World Englishes Writing Test

description: Essay Topics for the World Englishes Writing Test
DOI: 10.3535/74j-n50-q7z
title: limestone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vkb-xza-vby
title: Amyema Tiegh.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3530000.v1
title: Appendix D. Comparison with the method of Cornell et al. (2007).

description: Comparison with the method of Cornell et al. (2007).
DOI: 10.3535/8fk-xd7-4fq
title: rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hf7-6wj-nak
title: †Siphonotreta Verneuil, 1845

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14674056.v1
title: Sawyer Mill Dam Removal Project Sediment Area Drone Flight Paths

description: These are the automated drone flight paths for the sediment area of the Evans et al. Sawyer Mill dam removal study in Dover, New Hampshire, USA. These flight paths are specific to the reservoir response manuscript. A DJI Phantom 3 Professional drone with its original RGB camera equipped with a polarizing filter was used for the study.<br>All flight paths are available as csv files that were exported out of the Litchi mission hub. The pdf file contains screenshots of the paths in DJIFlightPlanner and Litchi. For information on the Litchi flight app, please see their website here: https://flylitchi.com/. The same set of flight paths were flown in both 2019 and 2020 to keep imagery collection consistent. Nadir flight paths had 80% side image overlap and 90% forward image overlap set in DJIFlightPlanner. The imagery angle for the angled flight paths was set to 20 degrees off nadir (-70 gimbal pitch in Litchi), and the paths of the angled flights were manually drawn in Litchi to supplement the nadir flight paths that were designed in DJIFlightPlanner.<br>For the sediment area, the altitude of the drone was set to 100 feet above ground level. Please note that since Litchi only allowed up to 99 waypoints per flight path, the angled 1 flight path had to be partially manually traced towards the end and was sometimes cut short due to battery life restrictions towards the end of the flight. <br>These materials were made using resources from an NSF EPSCoR funded project “RII Track-2 FEC: Strengthening the scientific basis for decision-making about dams: Multi-scale, coupled-systems research on ecological, social, and economic trade-offs” (a.k.a. "Future of Dams"). Support for this project is provided by the National Science Foundation’s Research Infrastructure Improvement NSF #IIA-1539071. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
DOI: 10.6084/m9.figshare.28236413.v1
title: Morphometric, health and demographic status of koalas in a fragmented agricultural landscape

description: Koalas are endangered iconic Australian species susceptible to anthropogenic disturbances and climate change, particularly in fragmented landscapes. This arboreal folivore inhabits diverse landscapes, including agricultural land where conservation challenges are frequent and exacerbated by a general lack of area-specific biological information. This study aimed to determine the demographic, morphometric, and health attributes of koalas inhabiting agricultural land. A total of 43 koalas (21 males and 22 females) were captured and examined using standard approaches near Pittsworth, Queensland, Australia. The examination process comprised morphometric measurements, physical examination, ultrasound assessment, and the collection of blood and swab samples, which were subsequently analysed in laboratories. Findings revealed an even sex ratio of koalas with a broad age structure inclusive of many females accompanied by joeys indicating high fecundity in the study area. Morphometric measurements were comparable with koalas from other regions of Queensland, and haematological and serum parameters were within the optimum range. However, the prevalence of chlamydiosis in this population of koalas was 44% (n=19). The high prevalence of chlamydial disease and koalas’ complete reliance on unprotected habitat indicates that their longer-term viability in such landscapes is tenuous. Future conservation programs should aim to protect and connect suitable habitat within fragmented agricultural landscapes and prioritise monitoring health dynamics of koala populations.
DOI: 10.17632/h2smbrp53g
title: Data for: Scalable Dual-layer Film with Broadband Infrared Emission for Sub-ambient Daytime Radiative Cooling

description: Optical constants; measured properties; outdoor tests; simulation
DOI: 10.17632/x6xxj4x4h7
title: WRF_cnop_initial_SWV_2010071612-2010071712

description: Normalized CNOP1 we calculated and some configuration files to Run WPS and WRF model.
DOI: 10.3535/36z-1nh-4bj
title: Rhabdinopora flabelliforme flabelliforme (Eichwald, 1840)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ze2-67l-k2g
title: limestone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23285321.v3
title: Major element, trace element, and 87Sr/86Sr isotope compositions for dikes, sills, dike profiles, and carbonates at Merry Widow and Quinsam, Vancouver Island, Canada

description: Table S1: Bulk rock major element (wt.%) and trace element (ppm) composition Table S2: 87Sr/86Sr isotope compositions for bulk rock powders Table S3: SN ICP-MS vs LA-ICP-MS concentrations on repeat samples
DOI: 10.3535/2kx-ltd-x65
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r1f-a1l-e5t
title: limestone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yvz-6kh-l6l
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fww-lxr-ayn
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kzz-ev7-952
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/7yvc8mmnyv
title: GROMACS implementation of free energy calculations with non-pairwise Variationally derived Intermediates

description: Gradients in free energies are the driving forces of physical and biochemical systems. To predict free energy differences with high accuracy, Molecular Dynamics (MD) and other methods based on atomistic Hamiltonians conduct sampling simulations in intermediate thermodynamic states that bridge the configuration space densities between two states of interest (’alchemical transformations’). For uncorrelated sampling, the recent Variationally derived Intermediates (VI) method yields optimal accuracy. The form of the VI intermediates differs fundamentally from conventional ones in that they are non-pairwise, i.e., the total force on a particle in an intermediate states cannot be split into additive contributions from the surrounding particles. In this work, we describe the implementation of VI into the widely used GROMACS MD software package (2020, version 1). Furthermore, a variant of VI is developed that avoids numerical instabilities for vanishing particles. The implementation allows the use of previous non-pairwise potential forms in the literature, which have so far not been available in GROMACS. Example cases on the calculation of solvation free energies, and accuracy assessments thereof, are provided.
DOI: 10.3535/35w-gfw-yk2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5zl-adl-642
title: Rhabdinopora flabelliforme flabelliforme (Eichwald, 1840)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.