cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5746227
title: Fasting northern elephant seal pup blubber transcriptome

description: De novo Trinity transcriptome assembly from blubber (adipose tissue) collected from weaned northern elephant seal (Mirounga angustirostris, NES) pups during their post-weaning fast. Samples were collected from independent cohorts of 6 pups each, "early fasting" (1-2 weeks post weaning) and "late fasting" (6-8 weeks post weaning) and total RNA was isolated (RIN: 7.6-9.0). Twelve strand-specific libraries were prepared according to Illumina protocol with Ribo-zero depletion (human/rat/mouse), and sequenced (125 bp paired-end reads) on one lane of Illumina HiSeq 2000, producing an average of 41.5 million reads per sample. De novo assembly was conducted using all 12 samples and Trinity v2.1.1 with default settings, including adapter trimming ,but without abundance normalization. The assembly contains 1,830,330 transcripts (contigs) in 1,635,200 gene clusters with mean and median contig length of 835 bp and 425 bp, respectively. Mapping rate of reads to assembly was 87% and the assembly contains 81.2% complete, 36.3% duplicated, and 15.5% fragmented vertebrate BUSCOs, with only 3.2% missing from this dataset. The assembly was annotated by BLASTx using DIAMOND v0.8.31 with "very sensitive" option against the UniProt/SwissProt database (downloaded 8/20/17), with e-value threshold of 0.001. We identified 389,363 homologs in the transcriptome. The raw assembly file is called FastingNESPupTrinityAssembly.gz and the annotation file is called FastingNESPupAssemblyAnnotation.xlsx (also available as a tab delimited text file).
DOI: 10.6084/m9.figshare.5746227.v1
title: Fasting northern elephant seal pup blubber transcriptome

description: De novo Trinity transcriptome assembly from blubber (adipose tissue) collected from weaned northern elephant seal (Mirounga angustirostris, NES) pups during their post-weaning fast. Samples were collected from independent cohorts of 6 pups each, "early fasting" (1-2 weeks post weaning) and "late fasting" (6-8 weeks post weaning) and total RNA was isolated (RIN: 7.6-9.0). Twelve strand-specific libraries were prepared according to Illumina protocol with Ribo-zero depletion (human/rat/mouse), and sequenced (125 bp paired-end reads) on one lane of Illumina HiSeq 2000, producing an average of 41.5 million reads per sample. De novo assembly was conducted using all 12 samples and Trinity v2.1.1 with default settings, including adapter trimming ,but without abundance normalization. The assembly contains 1,830,330 transcripts (contigs) in 1,635,200 gene clusters with mean and median contig length of 835 bp and 425 bp, respectively. Mapping rate of reads to assembly was 87% and the assembly contains 81.2% complete, 36.3% duplicated, and 15.5% fragmented vertebrate BUSCOs, with only 3.2% missing from this dataset. The assembly was annotated by BLASTx using DIAMOND v0.8.31 with "very sensitive" option against the UniProt/SwissProt database (downloaded 8/20/17), with e-value threshold of 0.001. We identified 389,363 homologs in the transcriptome. The raw assembly file is called FastingNESPupTrinityAssembly.gz and the annotation file is called FastingNESPupAssemblyAnnotation.xlsx (also available as a tab delimited text file).
DOI: 10.6084/m9.figshare.5746134
title: Proteome profiling of Aedes upon CHIKV and DENV mono-/coinfection

description: The experiments carried out to identify and quantify the various proteins extracted from Aedes aegypti mosquito sample upon CHIKV and DENV mono- and co-infection at 24 hrs post infection. Proteins from the tissue samples were extracted, reduced, alkylated and digested with trypsin. To obtain quantitative information, the peptides were labelled with TMT isobaric tags, mixed, fractionated and analysed by mass spectrometry. The proteins thus obtained were then subjected to basic bio-informatics analysis.
DOI: 10.6084/m9.figshare.5746134.v1
title: Proteome profiling of Aedes upon CHIKV and DENV mono-/coinfection

description: The experiments carried out to identify and quantify the various proteins extracted from Aedes aegypti mosquito sample upon CHIKV and DENV mono- and co-infection at 24 hrs post infection. Proteins from the tissue samples were extracted, reduced, alkylated and digested with trypsin. To obtain quantitative information, the peptides were labelled with TMT isobaric tags, mixed, fractionated and analysed by mass spectrometry. The proteins thus obtained were then subjected to basic bio-informatics analysis.
DOI: 10.6084/m9.figshare.5746098
title: LBCandnonLBC.sav

description: Data about the LBC and non-LBC's paychlogical and behavior index.
DOI: 10.6084/m9.figshare.5746098.v1
title: LBCandnonLBC.sav

description: Data about the LBC and non-LBC's paychlogical and behavior index.
DOI: 10.6084/m9.figshare.5746089
title: Primer sequences of ReG-SSR markers in flax

description: A genome-wide set of 580 simple sequence repeat markers were derived from transcription factor coding genes and long non-coding RNA sequences of flax genome. These markers were named ReG-SSRs as they were derived from the regulatory genes. In silico anchoring of 559 ReG-SSR markers was successful on the draft assembly of 15 chromosomes. A set of ReG-SSR primers was employed to characterize fibre flax accessions.
DOI: 10.6084/m9.figshare.5746089.v1
title: Primer sequences of ReG-SSR markers in flax

description: A genome-wide set of 580 simple sequence repeat markers were derived from transcription factor coding genes and long non-coding RNA sequences of flax genome. These markers were named ReG-SSRs as they were derived from the regulatory genes. In silico anchoring of 559 ReG-SSR markers was successful on the draft assembly of 15 chromosomes. A set of ReG-SSR primers was employed to characterize fibre flax accessions.
DOI: 10.6084/m9.figshare.5746062
title: RawData 2

description: Each sheet shows one species; its abundance, frequency, length and weight data, as well as its gonadal development.
DOI: 10.6084/m9.figshare.12895004
title: R0191_20171007a_videos

description: Rat 0191, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.5745927
title: Highly robust AgIO3/MIL-53 (Fe) nanohybrid composites for degradation of organophosphorus pesticides in single and binary systems: Application of artificial neural networks modellingm

description: A robust sunlight-driven AgIO<sub>3</sub>/MIL-53 (Fe) nanohybrid composite (NC) was successfully synthesised and characterised. The efficacy of the NC was estimated by decomposing two organophosphates pesticides (methyl malathion (MP) and chlorpyrifos (CP)) under sunlight irradiation. The degradation of MP and CP was strongly influenced by pH, catalyst dose and initial pesticide concentration. Under 60 min solar light illumination, ∼78–90% CP and MP were degraded individually in tap and distilled water, respectively. In binary mixture (MP + CP), ∼70% mineralisation was achieved within 180 min. The efficiency of NC is attributed to the prolonged separation of photogenerated carriers, a large concentration of surface hydroxyl groups and high specific surface area. Under artificial neural network (ANN) predicted conditions, 0.5 g NC, pH 5 and 2.5 mL of 50 mg/L Na<sub>2</sub>S<sub>2</sub>O<sub>8</sub> are required for complete mineralisation of the pesticides
DOI: 10.6084/m9.figshare.5745915
title: Influence of trait self-control and state self-control on intertemporal decisions

description: The dual-task paradigm was adopted in the present study, and the degree of depletion representing the state of self-control was manipulated by Stroop tasks. A physiological polygraph was used to record resting HRV and HRV in tasks during the experimental stages.
DOI: 10.14457/msu.res.2020.1
title: DEVELOPMENT OF KOMBUCHA AND ITS FUNCTIONAL PROPERTY FROM AGRICULTURAL WASTE (FERMENTED TEA BROTH)

description: The aim of this project was to develop a functional product from fermented tea broth which is a by-product of fermented tea (Miang). The broth that was from the 15th day fermented tea was used. The broth was boiled with the additional of 10% sugar for brix adjustment to make original and pineapple kombucha. Original fermented broth kombucha were produced form mixing with water and fermented broth (1:1.5) and add (1:1) pineapple for pineapple favor. After that, they were mixed with scoby and 3% of previous kombucha which produced from fermentation of Komagataeibacter saccharivorans, Zygosaccharomyces bailii, Dekkera bruxellensis. The analysis of antioxidant activity, total phenolic content and flavonoids content were performed at interval of 0, 1, 3, 5, 7, 9 and 11 day. The result showed that total phenolic of both original and pineapple kombucha were reduced. Total phenolic contents of original kombucha was in ranged of 32.1 - 42.05 ?mol GAE/ 100 mL. Total phenolic contents of pineapple favour was in ranged of 23.1 ? 0.67 - 29.57 ? 1.19 ?mol GAE/ 100 mL. While antioxidant (FRAP & ORAC) slightly increased in both batched. Antioxidant activity on FRAP of original kombucha was 311,527.8 ? 38,978.9 ?mol TE / 100 mL. Antioxidant activity on ORAC of original kombucha and pineapple favor were highest at day 7 (620,442.1 ? 79,695.4 and 506,842 ? 212,017.1 ?mol TE / 100 mL, respectively). Total flavonoids were decreased from 0th day fermented tea kombucha as it formed dimer and complex structure (10.15 6.92 ?mol CE / 100 mL). Therefore, per serving size the developed kombuchas contained high amount of both phenolics and flavonoids. Fermented broth can be developed into Kombucha that containing functional property compounds.
DOI: 10.14457/msu.res.2020.2
title: EFFECT OF BACKGROUND COLOR AND NITRITE STRESS ON COOKED SHRIMP COLOR OF PACIFIC WHITE SHRIMP (Litopenaeus vannamei)

description: The effect of background color and nitrite stress on cooked shrimp color of pacific white shrimp (litopenaeus vannamei) was conducted. Two factors of A: back ground color, black and white and B: no nitrite stress and with nitrite stress condition at 10 ppm were assigned in Factorial 2X3 in complete randomized designed (Factorial 2X3 in CRD) then 6 treatments and 3 replicates were studied. Shrimp with average weight of 7.43-8.21 gr/ind were exposure in treatment condition of no nitrite stress for 1 hr and with nitrite stress at 10 ppm for 1 hr and 24 hr then sampling for boiled and conducted color measurement by colorimeter and salmofan to compare the red intensity of cooked shrimp color. The results showed that the black background condition could promote the cooked shrimp color both in normal condition and under nitrite stress condition better than white background condition. The nitrite stress condition at 10 ppm could enhance the cooked shrimp color in short term periods of 1 hr. better than normal condition. For long term exposure to nitrite stress condition at 10 ppm for 24 hr., the stress condition reduced the redness of cooked shrimp color and reduced the carotenoid accumulation in shrimp.
DOI: 10.14457/msu.res.2020.3
title: EFFECT OF GELATION ADDITION ON PHYSICO-CHEMICAL CHARACTERISTICS OF BASTARD OLEASTER GUMMY JELLY

description: Gummy jelly, a gelling-based confectionary product, was prepared by the combination of sugar, gelling agent, and other components. The objective of this present studies was to investigate the effect of different levels of gelation on physico-chemical characteristics of fruit gummy jelly product prepared from Bastard oleaster fruits. Bastard oleaster juice was mixed with water, sugar, citric acid, and the varied concentration of gelatin (at 8%, 9%, and 10% by weight of totally ingredients), then formed in molds and placed at 25?C for 2-4 hours until it dried. The physico-chemical characteristics of gummy jelly products were analyzed. It was found that pH value, total soluble solid, total acidity, and springiness of gummy jelly products showed statistically significant increase as the increasing of gelatin addition (p?0.05), in the following ranges, 3.51-3.66, 66.4-69.8?Brix, 1.19-1.65%, 8.41-9.19 N, respectively. In contrast, the moisture content decreased from 7.35% to 6.33% with the loss of vitamin C content, 6.88-4.79 mg ascorbic acid/100 g gummy product (p?0.05). There were no significant differences in hardness, cohesiveness, gumminess, and chewiness, except of springiness among three gelatin concentrations of gummy jelly samples. The results revealed that gelatin addition was effective in improving the physico-chemical texture characteristics of gummy jelly products.
DOI: 10.14457/msu.res.2020.4
title: EFFECT OF PECTIC OLIGOSACCHARIDES FROM FRUIT PEELS AS PREBIOTIC IN ANIMAL FEED

description: The objective of this study was to improve fruit peels (pomelo peel, lime peel and mango peel) with enzyme (Hemicell?) as prebiotics in animal feed. There were 2 experiments designed in completely randomized design (CRD). In the experiment 1, it consisted of 6 treatments with 3 types of fruit peels (pomelo peel, lime peel and mango peel) and 2 levels of enzymes (0 and 1% (w/w)) with 3 replications. The samples were taken to measure chemical compositions, reducing sugar content and oligosaccharides analysis. The results were showed that chemical compositions were significantly different among treatments (P&lt;0.01). Enzyme treated lime peel had higher ash, crude protein and ether extract content but lower cellulose than other treatments (P&lt;0.01), 4.98, 6.40, 8.87% and 9.92%, respectively. Enzyme treated and untreated mango peel contained higher gross energy than other treatments (P&lt;0.01), 4,100.54 and 4,069.14 kcal/kg, respectively. In addition, reducing sugar content was significantly different among treatments (P&lt;0.05). Enzyme treated mango peel contained higher reducing sugar content than other treatments (P&lt;0.05). There were 42.04, 28.86, 177.06, 77.28, 37.09 and 265.91 mg/g, respectively. Oligosaccharides analysis by Thin layer chromatography method showed that all treatments releasing oligosaccharides. In experiment 2, it was examined prebiotic properties (concentration of sugar 1.5 mg/ml), the results showed that glucose product from all treatments could increase growth of Lactobacillus plantarum but enzyme treated lime peel could decrease growth of Escherichai coli. In conclusion, lime peel treated enzyme can be used as prebiotics as it could increase probiotics and decrease growth of pathogenic bacteria.
DOI: 10.14457/msu.res.2020.5
title: DEVELOPMENT OF KOMBUCHA AND ITS FUNCTIONAL PROPERTY FROM AGRICULTURAL WASTE (FERMENTED TEA BROTH)

description: The aim of this project was to develop a functional product from fermented tea broth which is a by-product of fermented tea (Miang). The broth that was from the 15th day fermented tea was used. The broth was boiled with the additional of 10% sugar for brix adjustment to make original and pineapple kombucha. Original fermented broth kombucha were produced form mixing with water and fermented broth (1:1.5) and add (1:1) pineapple for pineapple favor. After that, they were mixed with scoby and 3% of previous kombucha which produced from fermentation of Komagataeibacter saccharivorans, Zygosaccharomyces bailii, Dekkera bruxellensis. The analysis of antioxidant activity, total phenolic content and flavonoids content were performed at interval of 0, 1, 3, 5, 7, 9, 11 day. The result showed that total phenolic of both original and pineapple kombucha were reduced. Total phenolic contents of original kombucha was in ranged of 32.1 - 42.05 ?mol GAE/ 100ml. Total phenolic contents of pineapple favour was in ranged of 23.1 ? 0.67 - 29.57 ? 1.19 ?mol GAE/ 100 ml. While antioxidant (FRAP & ORAC) slightly increased in both batched. Antioxidant activity on FRAP of original kombucha was 311,527.8 ? 38,978.9 ?mol TE /100 ml. Antioxidant activity on ORAC of original kombucha and pineapple favor were highest at day 7 (620,442.1 ? 79,695.4 and 506,842 ? 212,017.1 ?mol TE/ 100 ml respectively). Total flavonoids were decreased from 0th day fermented tea kombucha as it formed dimer and complex structure (10.15 6.92 ?mol CE /100 ml). Therefore, per serving size the developed kombuchas contained high amount of both phenolics and flavonoids. Fermented broth can be developed into Kombucha that containing functional property compounds.
DOI: 10.14457/msu.res.2020.6
title: FACTORS AFFECTING THE IMPLEMENTATION OF GAP AMONG BANANA (GROS MICHEL) GROWERS IN BAN LAT DISTRICT, PHETCHABURI PROVINCE, THAILAND

description: Banana (Gros Michel) or Kluai Hom Thong (Musa acuminata, AAA Group) is an economic crop in Thailand and it is an important product to export under the standard of good agricultural practice (GAP). This study aims to investigate factors affecting the GAP implementation among banana (Gros Michel) growers who adopt GAP for practice in Ban lat district, Phetchaburi province. This study revealed that most of farmers encountered water scarcity but they realized the importance of recording the data during the GAP practice. Gender, number of family members and farming organization membership were the factors highly impacting the implementation of GAP among these banana growers. The results from this study should direct the staffs in the relevant organizations to focus on these three key issues to improve growing banana with GAP certification.
DOI: 10.6084/m9.figshare.5745879
title: 新建 Microsoft Excel 工作表.xlsx

description: genotype data of diabetic kidney disease and haptoglobin
DOI: 10.14457/msu.res.2020.7
title: IN VITRO CYTOTOXICITY OF CORDYCEPS MILITARIS EXTRACTS ON DIFFERENT HUMAN CANCER CELL LINES

description: This study was conducted to evaluate the in vitro cytotoxicity of C. militaris extracts against cancer cells. The cytotoxic activity was tested using Resazurin reduction microplate assay (REMA). The in vitro assay for the C. militaris extracts was measured using three human cancer cells: Human hepatocellular carcinoma (HepG2), Human breast adenocarcinoma (MCF-7), and Cervical adenocarcinoma (HeLa). The REMA assay indicated that Ethyl alcohol (EtOH) and Ethyl acetate (EtOAc) extract of C. militaris exhibited significant cytotoxicity on MCF-7, HepG-2 and HeLa cancer cells in the dose-dependent manner. C. militaris extracted with EtOAc exhibited stronger cytotoxicity on MCF-7 than HepG2 and HeLa. The results obtained indicated that the probable use of the C. militaris extract in preparing recipes for cancer-related ailments. Further studies will identify bioactive compounds and elucidate more detailed molecular mechanisms of cell death.
DOI: 10.6084/m9.figshare.5745879.v1
title: 新建 Microsoft Excel 工作表.xlsx

description: genotype data of diabetic kidney disease and haptoglobin
DOI: 10.14457/msu.res.2020.8
title: IN VITRO DIGESTIBILITY OF FISHMEAL REDUCTION DIET IN COMBINATION WITH PROTEASE ENZYME BY NILE TILAPIA (Oreochromis niloticus) DIGESTIVE ENZYME

description: The in vitro digestibility of fishmeal reduction diet in combination with protease enzyme by using Nile tilapia (Oreochromis niloticus) digestive enzyme was conducted and assigned in Factorial 2?2?3 in Complete Randomized Design (Factorial 2?2?3 in CRD). Factor A was fishmeal levels of fishmeal 5% and fishmeal 0%. Factor B was protease enzyme supplementation of no protease enzyme supplementation and with protease enzyme supplementation at 100 unit/Kg of feed. Factor C was Tilapia digestive enzyme of no Tilapia digestive enzyme supplementation, enzyme from Tilapia liver, enzyme from Tilapia intestine. Hence, the trial was conducted on 12 treatments and 3 replicates. The results showed that showed the high ability (p&lt;0.05) of intestinal enzyme on protein, carbohydrate and phosphorus digestibility. The protease enzyme supplementation at 100 unit/Kg of feed showed no improving (p&gt;0.05) of protein, carbohydrate and phosphorus digestibility. The zero fishmeal diet exhibited the better protein digestibility (p&lt;0.05) than diet of fishmeal 5% but showed no significantly differences (p&gt;0.05) on carbohydrate and phosphorus digestibility.
DOI: 10.14457/msu.res.2020.9
title: INVESTIGATION THE PHYSICAL, MECHANICAL PROPERTIES OF EDIBLE FILM FROM RICEBERRY FLOUR

description: Edible film samples containing riceberry flour at 15, 20, 25 and 30% (w/w) with adding glycerol as a plasticizer were extruded. The film properties were investigated. The results showed that the thickness and opacity of film samples decreased while moisture content, aw, and water solubility increased with an increase in the concentration of glycerol. The colors (L, a*, b*) values of the films were changed with glycerol concentration. The mechanical properties in terms of tensile strength and load at the maximum of the film decreased but elongation at break increased with an increase in the concentration of glycerol. Adding glycerol as a plasticizer affected the physical and mechanical properties of riceberry film depending the concentration of glycerol.
DOI: 10.14457/msu.res.2020.10
title: METHOD VALIDATION FOR QUANTITATIVE DETERMINATION OF GALLIC ACID FROM ACACIA CONCINNA (WILLD.) D.C.

description: Gallic acid is one of the most antioxidative components found in Acacia genus. Acacia concinna (Willd.) D.C. belongs to Acacia genus and Fabaceae family, this genus has been used as traditional medicine. The development and validation of RP-HPLC method to determine gallic acid from the ethanolic extract of Acacia concinna. The chromatographic condition was performed on Symmetry Shield RP18 (4.6 x 250 mm) with ACN and 0.5% H3PO4 as mobile phases, flow rate 1.0 mL/min and detection at 272 nm. The quantitative results using external standard, standard gallic acid showed the linear range between 5-50 ?g/mL while LOD and LOQ exhibited the values at 0.87 and 2.65 ?g/mL, respectively. The accuracy and precision also examined. In the real sample, the ethanolic extract of A. concinna consisted of gallic acid 1.042 %w/w.
DOI: 10.14457/msu.res.2020.11
title: PHYTOCHEMICALS AND ANTIOXIDATION OF FRACTIONATED SUGARCANE EXTRACTS: SUPHANBURI 50 VARIETY

description: The objective of this work is to fractionate the Suphanburi 50 sugarcane extract using silica gel column chromatography and screen its phytochemical contents and antioxidation in each fraction. The phytochemicals including total phenolic, flavonoids, saponin, proanthocyanidin and condensed-tannin were varied by the fractions depending on the eluting solvents. Moreover, the antioxidation of the fractionated extracts were also varied following the eluting solvents. All phytochemicals were positively corelated to all antioxidation methods, but in variable values. The obtained results indicated that the sugarcane, Suphanburi 50 variety is a natural good source of phytochemicals and exposed antioxidant activity which would be supported health benefit.
DOI: 10.14457/msu.res.2020.12
title: PREPARATION AND CHARACTERIZATION OF WATER HYACINTH CELLULOSE/KERATOSE COMPOSITE FILMS

description: This research aimed to extract cellulose from water hyacinth for preparation of composite films with different ratios of hair keratose. The keratose film has more transparency than other films. All films were then investigated their morphology, secondary structure, and thermal properties using scanning electron microscopy (SEM), Fourier transform infrared (FTIR) spectrophotometer, and Thermogravimetric analyzer (TGA), respectively. The results found that the native keratose film has smooth surfaces without phase separation, while the cellulose film has rough and some fibers appeared on its surface. The cellulose/keratose composite films have specific absorption peaks of each polymer functional groups. The secondary structure of the keratose film has a ?-pleated sheet resulting in the fragile texture and brittle. Adding cellulose increased flexibility and thermal properties of the keratose film. This was due to the keratose and cellulose formed interaction via functional groups. The result suggested that cellulose and keratose are well compatible together. The finding results might be advantaged to use as basic information to prepare for the cellulose/keratose composite films obtaining desire properties for applications.