cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19848748.v1
title: Supplementary Material for: A novel signature based on m6A RNA methylation regulators reveals distinct prognostic subgroups and associates with tumor immunity of patients with pancreatic neuroendocrine neoplasms

description: Introduction: The RNA N6-methyladenosine (m6A) regulators play a crucial role in tumorigenesis and could be indicators of prognosis and therapeutic targets in various cancers. However, the expression status and prognostic value of m6A regulators have not been studied in pancreatic neuroendocrine neoplasms (PanNENs). We aimed to investigate the expression patterns and prognostic value of m6A regulators and assess their correlations with immune checkpoints and infiltrates in PanNENs. Methods: Immunohistochemistry was performed for 15 m6A regulators and immune markers using tissue microarrays obtained from 183 patients with PanNENs. The correlation between m6A protein expression and clinicopathological parameters with recurrence-free survival (RFS) was examined using a random survival forest, Cox regression model and survival tree analysis. Results: Among the 15 m6A proteins, high expression of YTHDF2 and HNRNPC was found to be significantly associated with recurrence and served as independent risk factors. High YTHDF2 expression was associated with higher number of CD3+ T cells, whereas high HNRNPC expression was significantly correlated with the expression of PD-L1. A YTHDF2-based signature was determined, including five patterns from survival tree analysis: patients with the LNnegYTHDF2high signature had a 5-year RFS rate of 92.1%, whereas patients with LNposTumorSize＜2.5cm signature had the worst 5-year RFS rate of 0%. The area under receiver operating characteristic curve was 0.870 for the YTHDF2-based signature. The C-index was 0.978, suggesting good discrimination ability; the risk score of recurrence served as an independent prognostic factor indicating shorter RFS. Conclusions: YTHDF2 appears to serve as a promising prognostic biomarker and therapeutic target. A YTHDF2-based signature can identify distinct subgroups, which may be helpful to strategize personalized postoperative monitoring.
DOI: 10.6084/m9.figshare.20176154
title: B.1.351 SARS-CoV-2 variant exhibits higher virulence but less viral shedding than that of the ancestral strain in young nonhuman primates

description: The supplemental material of <em>B.1.351 SARS-CoV-2 variant exhibits higher virulence but less viral shedding than that of the ancestral strain in young nonhuman primates</em>
DOI: 10.6084/m9.figshare.20176154.v1
title: B.1.351 SARS-CoV-2 variant exhibits higher virulence but less viral shedding than that of the ancestral strain in young nonhuman primates

description: The supplemental material of <em>B.1.351 SARS-CoV-2 variant exhibits higher virulence but less viral shedding than that of the ancestral strain in young nonhuman primates</em>
DOI: 10.5258/soton/369449
title: RCUK Policy on Open Access: compliance monitoring data.

description: This details the open access papers, journal articles and conference papers, with a least one author at the University of Southampton that are compliant with the RCUK Policy on Open Access. The data should be looked at in conjunction with the University of Southampton RCUK Policy on Open Access: compliance monitoring report.
DOI: 10.5281/zenodo.6759603
title: Delimitación territorial de las Juntas Administrativas de Zaragoza

description: Relación de Juntas Administrativas y sus delimitaciones de la ciudad de Zaragoza. Los <strong>Distritos</strong> del término municipal de Zaragoza son divisiones territoriales propias, dotadas de órganos de gestión desconcentrada denominados Juntas Municipales y Juntas Vecinales, para impulsar y desarrollar la participación ciudadana en la gestión de los asuntos municipales y su mejora, sin perjuicio de la unidad de gobierno y gestión del municipio. En el término municipal de Zaragoza se asientan dieciséis distritos: Centro, CascoHistórico, Delicias, Universidad, San José, Las Fuentes, Almozara, Oliver-Valdefierro, Torrero, Actur-Rey Fernando, El Rabal, Casablanca, Santa Isabel, Miralbueno, Sur y el Distrito Rural, quecomprende los catorce barrios rurales: Alfocea, Casetas, Garrapinillos, Juslibol, La Cartuja Baja,Montañana, Monzalbarba, Movera, Peñaflor, San Gregorio, San Juan de Mozarrifar, Torrecilla, Ventadel Olivar y Villarrapa. Los Distritos se rigen por las Juntas Municipales y los Barrios Rurales por las Juntas Vecinales. Octubre de 2017: se han incluido las delimitaciones de las juntas municipales de los años 1968, 1982, 1992, 2016, 2017. Acceso a la ficha descriptiva del dataset
DOI: 10.5281/zenodo.6759602
title: Delimitación territorial de las Juntas Administrativas de Zaragoza

description: Relación de Juntas Administrativas y sus delimitaciones de la ciudad de Zaragoza. Los <strong>Distritos</strong> del término municipal de Zaragoza son divisiones territoriales propias, dotadas de órganos de gestión desconcentrada denominados Juntas Municipales y Juntas Vecinales, para impulsar y desarrollar la participación ciudadana en la gestión de los asuntos municipales y su mejora, sin perjuicio de la unidad de gobierno y gestión del municipio. En el término municipal de Zaragoza se asientan dieciséis distritos: Centro, CascoHistórico, Delicias, Universidad, San José, Las Fuentes, Almozara, Oliver-Valdefierro, Torrero, Actur-Rey Fernando, El Rabal, Casablanca, Santa Isabel, Miralbueno, Sur y el Distrito Rural, quecomprende los catorce barrios rurales: Alfocea, Casetas, Garrapinillos, Juslibol, La Cartuja Baja,Montañana, Monzalbarba, Movera, Peñaflor, San Gregorio, San Juan de Mozarrifar, Torrecilla, Ventadel Olivar y Villarrapa. Los Distritos se rigen por las Juntas Municipales y los Barrios Rurales por las Juntas Vecinales. Octubre de 2017: se han incluido las delimitaciones de las juntas municipales de los años 1968, 1982, 1992, 2016, 2017. Acceso a la ficha descriptiva del dataset
DOI: 10.5258/soton/367742
title: muVIS 3D x-ray CT scan of Newport Series brown earth loamy sand sieved to &lt;2mm with wheat plant (cultivar Skyfall).
DOI: 10.5281/zenodo.6778042
title: MOE_Golgi_Analyzer_v1

description: <strong>Description of the folder content :</strong> <br> 1) The macro in .ijm format.<br> Suited for analysis of 3-channel confocal fluorescence microscopy images of mammalian cells (~200*200µm). <br> Requires ImageJ v1.4 with Bio-render plugin.<br> Images should be as .nd2 format but it can easily be changed, simply search & replace all occurences of ".nd2" with your format in the macro code.<br> Images should be organized with every replicate of a same test-condition in a unique folder. The macro will analyze the whole folder at once and will create a folder in it to save results. <br> 2) A folder named "example_data", it contains 3 representative images that can be used to test the macro. <br> It also contains a results folder with representative data obtained via the analysis of these representative images with the macro (see Description of the macro for description of the results obtained) ____________________________ <strong>Description of the macro :</strong> input : 3-channel image with C1 = nucleus labeling (e.g. DAPI, Hoechst, etc.) <br> C2 = signal of interest, the one you want to measure in whole cells & in the region of interest <br> C3 = region of interest (ROI) (e.g. an antibody directed against a particular organelle, in our case Golgi apparatus) <br> <br> this macro will : <br> count the cells according to C1 (user input of threshold values for C1) <br> create ROI(s) according to C3 (user input of threshold values, or manual setting of each image for C3) <br> measure signal of C2 (mean min max grey values, integrated density, area) in whole cells (user input of threshold values for C2) measure signal of C2 in ROI(s) <br> save results as a .csv file <br> <br> it will also create several .png images for each analyzed one : <br> C1+nucleusROI (to assess correct cell counting) <br> C3+ROIC3 (to assess correct creation of ROI(s) from C3 signal) <br> C2 (glow LUT) + ROIC3 (to assess correct thresholding of C2 signal) <br> C2+ROIC3 <br> merge C1+C2+C3
DOI: 10.5281/zenodo.6778041
title: MOE_Golgi_Analyzer_v1

description: <strong>Description of the folder content :</strong> <br> 1) The macro in .ijm format.<br> Suited for analysis of 3-channel confocal fluorescence microscopy images of mammalian cells (~200*200µm). <br> Requires ImageJ v1.4 with Bio-render plugin.<br> Images should be as .nd2 format but it can easily be changed, simply search & replace all occurences of ".nd2" with your format in the macro code.<br> Images should be organized with every replicate of a same test-condition in a unique folder. The macro will analyze the whole folder at once and will create a folder in it to save results. <br> 2) A folder named "example_data", it contains 3 representative images that can be used to test the macro. <br> It also contains a results folder with representative data obtained via the analysis of these representative images with the macro (see Description of the macro for description of the results obtained) ____________________________ <strong>Description of the macro :</strong> input : 3-channel image with C1 = nucleus labeling (e.g. DAPI, Hoechst, etc.) <br> C2 = signal of interest, the one you want to measure in whole cells & in the region of interest <br> C3 = region of interest (ROI) (e.g. an antibody directed against a particular organelle, in our case Golgi apparatus) <br> <br> this macro will : <br> count the cells according to C1 (user input of threshold values for C1) <br> create ROI(s) according to C3 (user input of threshold values, or manual setting of each image for C3) <br> measure signal of C2 (mean min max grey values, integrated density, area) in whole cells (user input of threshold values for C2) measure signal of C2 in ROI(s) <br> save results as a .csv file <br> <br> it will also create several .png images for each analyzed one : <br> C1+nucleusROI (to assess correct cell counting) <br> C3+ROIC3 (to assess correct creation of ROI(s) from C3 signal) <br> C2 (glow LUT) + ROIC3 (to assess correct thresholding of C2 signal) <br> C2+ROIC3 <br> merge C1+C2+C3
DOI: 10.6084/m9.figshare.20177417
title: CP8-BI.tre

description: We reconstructed the backbone phylogeny of Lamioideae using 80 plastid-encoded protein genes (dataset CP80), with plastomes from two individuals of <em>M. sagittatum</em>, 12 species of <em>Phlomoides</em> Moench, one species of <em>Phlomis</em> L., two species of <em>Paraphlomis</em> (Prain) Prain, and one species of <em>Betonica</em> were newly sequenced for this study, and the remaining 43 accessions downloaded from GenBank. As indicated by the first set of analyses, <em>Metastachydium</em> is deeply nested within genus <em>Phlomoides</em> of Phlomideae, which guided the second set of analyses. Therefore, we clarified the position of <em>Metastachydium</em> within <em>Phlomoides</em>. Two datasets were constructed for this step. The first dataset included eight plastid DNA regions (<em>atpB-rbcL</em>, <em>psbA-trnH</em>, <em>rpl16</em>, <em>rpl32</em>-<em>trnL</em>, <em>rps16</em>, <em>trnL-trnF</em>, <em>trnT</em>-<em>trnL</em>, and <em>trnK</em>; dataset CP8), while the second dataset consisted of nrITS.
DOI: 10.6084/m9.figshare.20177417.v1
title: CP8-BI.tre

description: We reconstructed the backbone phylogeny of Lamioideae using 80 plastid-encoded protein genes (dataset CP80), with plastomes from two individuals of <em>M. sagittatum</em>, 12 species of <em>Phlomoides</em> Moench, one species of <em>Phlomis</em> L., two species of <em>Paraphlomis</em> (Prain) Prain, and one species of <em>Betonica</em> were newly sequenced for this study, and the remaining 43 accessions downloaded from GenBank. As indicated by the first set of analyses, <em>Metastachydium</em> is deeply nested within genus <em>Phlomoides</em> of Phlomideae, which guided the second set of analyses. Therefore, we clarified the position of <em>Metastachydium</em> within <em>Phlomoides</em>. Two datasets were constructed for this step. The first dataset included eight plastid DNA regions (<em>atpB-rbcL</em>, <em>psbA-trnH</em>, <em>rpl16</em>, <em>rpl32</em>-<em>trnL</em>, <em>rps16</em>, <em>trnL-trnF</em>, <em>trnT</em>-<em>trnL</em>, and <em>trnK</em>; dataset CP8), while the second dataset consisted of nrITS.
DOI: 10.34740/kaggle/dsv/3878608
title: AutoXGB
DOI: 10.48505/nims.3703
title: Datasets of aluminum alloys in 5000, 6000, and 7000 series.

description: Some aluminum alloys data in the 5000, 6000, and 7000 series. Three types of mechanical properties are examined: 0.2% proof stress, tensile strength, and elongation.
DOI: 10.5258/soton/365546
title: Visualisation of the flow and force distribution around a self propelled container ship in head waves

description: This data set contains animations showing the development of quantities relating to powering performance over one period of encounter in head waves for the Korean Container Ship (KCS.) 

The data set consists of:

* Animation of the unsteady wave pattern around the hull

* Animations of pressure and viscous force distributions on the underwater body. Both the total and the surge components are shown

* Animations of axial velocity in and around the propeller plane

* Animations of transverse velocity in and around the propeller plane

A report is also attached which explains the colour scales and the quantities shown in the animations.
DOI: 10.6084/m9.figshare.20178869
title: Combined effect of a mobile bed and floodplain edge vegetation on compound channel conveyance

description: This technical note presents results from flume experiments conducted in a straight prismatic asymmetric compound channel with two different floodplain roughnesses and rigid emergent vegetation along the floodplain edge in combination with a mobile and fixed main channel bed, respectively. It is found that the contribution of floodplain roughness and vegetation along the floodplain edge to the bulk friction factor is considerably reduced when studied in combination with a mobile main channel bed featuring bedforms. This in turn means that the effect of vegetation along the floodplain edge on the conveyance capacity and bulk friction factor may be overestimated if it is studied solely with fixed bed conditions. The presented results reveal the need to improve our understanding of the complex interplay between mobile beds and vegetation along the floodplain edge and its combined effect on compound channel conveyance capacity and hydraulics.
DOI: 10.6084/m9.figshare.20178869.v1
title: Combined effect of a mobile bed and floodplain edge vegetation on compound channel conveyance

description: This technical note presents results from flume experiments conducted in a straight prismatic asymmetric compound channel with two different floodplain roughnesses and rigid emergent vegetation along the floodplain edge in combination with a mobile and fixed main channel bed, respectively. It is found that the contribution of floodplain roughness and vegetation along the floodplain edge to the bulk friction factor is considerably reduced when studied in combination with a mobile main channel bed featuring bedforms. This in turn means that the effect of vegetation along the floodplain edge on the conveyance capacity and bulk friction factor may be overestimated if it is studied solely with fixed bed conditions. The presented results reveal the need to improve our understanding of the complex interplay between mobile beds and vegetation along the floodplain edge and its combined effect on compound channel conveyance capacity and hydraulics.
DOI: 10.5281/zenodo.6778025
title: Still standing: the heat protection delivered by a facultative symbiont to its aphid host is resilient to repeated thermal stress

description: This is the dataset for the article "<strong>Still standing: the heat protection delivered by a facultative symbiont to its aphid host is resilient to repeated thermal stress</strong>". This experimental study focused on the heat-protective mutualism between the pea aphid <strong><em>Acyrthosiphon pisum</em></strong> and the facultative bacterium <strong><em>Serratia symbiotica</em></strong>. We exposed two aphid lines (5A: deprived of <em><strong>S. symbiotica</strong></em>, 5AR: infected by <strong><em>S. symbiotica</em></strong>) to a varying number of heat shocks (35°C for 2 h) applied during insect immature development: none (control), one, two, or three. We recorded aphid immature survival rate, total longevity, immature development time, lifetime fecundity and hind tibia length (body size). . Individual = identification of the individual . Line = aphid clonal line, either deprived of (5A) or infected by <em><strong>S. symbiotica</strong> </em>(5AR) . Temp = thermal treatment, defined by the number of heat shocks applied during aphid juvenile life (0 = control, 1, 2 or 3) . Survival = whether (Y) or not (N) the individual survived until reproduction . Adulthood = time elapsed between birth and first reproduction (in days) . Longevity = time elapsed between birth and death (in days) . Fecundity = total number of larvae produced by each aphid throughout lifetime . Wing = whether (Y) or not (N) the individual developed wings following imaginal moult . Tibia = hind tibia length as a proxy of body size (in mm)
DOI: 10.5281/zenodo.6778024
title: Still standing: the heat protection delivered by a facultative symbiont to its aphid host is resilient to repeated thermal stress

description: This is the dataset for the article "<strong>Still standing: the heat protection delivered by a facultative symbiont to its aphid host is resilient to repeated thermal stress</strong>". This experimental study focused on the heat-protective mutualism between the pea aphid <strong><em>Acyrthosiphon pisum</em></strong> and the facultative bacterium <strong><em>Serratia symbiotica</em></strong>. We exposed two aphid lines (5A: deprived of <em><strong>S. symbiotica</strong></em>, 5AR: infected by <strong><em>S. symbiotica</em></strong>) to a varying number of heat shocks (35°C for 2 h) applied during insect immature development: none (control), one, two, or three. We recorded aphid immature survival rate, total longevity, immature development time, lifetime fecundity and hind tibia length (body size). . Individual = identification of the individual . Line = aphid clonal line, either deprived of (5A) or infected by <em><strong>S. symbiotica</strong> </em>(5AR) . Temp = thermal treatment, defined by the number of heat shocks applied during aphid juvenile life (0 = control, 1, 2 or 3) . Survival = whether (Y) or not (N) the individual survived until reproduction . Adulthood = time elapsed between birth and first reproduction (in days) . Longevity = time elapsed between birth and death (in days) . Fecundity = total number of larvae produced by each aphid throughout lifetime . Wing = whether (Y) or not (N) the individual developed wings following imaginal moult . Tibia = hind tibia length as a proxy of body size (in mm)
DOI: 10.5258/soton/d2255
title: Dataset to support the article: Analysis of lower limb prosthetic socket interface based on stress and motion measurements

description: This dataset supports the publication: Jinghua Tang, Liudi Jiang, Michael McGrath, Dan Bader, Piotr Laszczak, David Moser, Saeed Zahedi. (2022) Analysis of lower limb prosthetic socket interface based on stress and motion measurements Proceedings of the Institution of Mechanical Engineers, Part H: Journal of Engineering in Medicine This dataset contains results presented in the journal article entitled 'Analysis of lower limb prosthetic socket interface based on stress and motion measurements', in .xlsx format. The excel files contain all experimental data used for generating Fig.3 to Fig.7 Fig. 3: Mean and SD of (a) pressure, (b) circumferential shear stress and (c) longitudinal shear stress obtained at PP, AD, and AP locations in Session 2. Fig. 4: Peak pressure and longitudinal stress, SL, at (a) PP location and (b) AD location of the residuum, over five measurement sessions. Fig. 5: Mean and SD of the interface angular coupling in sagittal plane, α and (b) pistoning, obtained over a GC in Session 3. Fig. 6: Peak angular coupling in sagittal plane and pistoning, over five measurement sessions. Fig. 7: (a) Pressure and (b) longitudinal shear, SL at PP location, obtained at slow, self-selected and fast walking speed, over a GC. (c) Pistoning, and (d) angular coupling in sagittal plane, α obtained, obtained at slow, self-selected and fast walking speed, over a GC. Geographic location of data collection: Blatchford Products Ltd, U.K. Dataset available under a CC BY 4.0 licence Publisher: University of Southampton, U.K.
DOI: 10.3217/b9d45-ty514
title: Digital Transformation of Teaching and Perception at TU Graz from the Students' Perspective. Supplementary evaluations and tables

description: The presented tables and figures are supplementary materials for the contribution of Ebner, Martin; Mair, Bettina; De Marinis, C.; Müller, H.; Nagler, W. & Schön, S. (2022). Digital Transformation of Teaching and Perception at TU Graz from the Students' Perspective: Developments from the Last 17 Years. In: Proceedings of ICL Conference 2022, Vienna.
DOI: 10.6084/m9.figshare.20178860
title: Graphs.xlsx

description: This data provides excell sheet of the dye induced changes in the brain of Labeo rohita.
DOI: 10.6084/m9.figshare.20178860.v1
title: Graphs.xlsx

description: This data provides excell sheet of the dye induced changes in the brain of Labeo rohita.
DOI: 10.5281/zenodo.6778131
title: REFLOW - Simulated Data Gown Recycling Amsterdam

description: Simulated data for an isolation gown recycling usecase for an Amsterdam Pilot within the Reflow-EU-project context
DOI: 10.5281/zenodo.6778130
title: REFLOW - Simulated Data Gown Recycling Amsterdam

description: Simulated data for an isolation gown recycling usecase for an Amsterdam Pilot within the Reflow-EU-project context
DOI: 10.5281/zenodo.6778056
title: REFLOW - Food Market 4.0 Pilot Data

description: Simulated Data, which reflects the characteristics of the Data collected by the Foodmarket 4.0 Pilot within the context of the Reflow-EU-project.
DOI: 10.5281/zenodo.6778055
title: REFLOW - Food Market 4.0 Pilot Data

description: Simulated Data, which reflects the characteristics of the Data collected by the Foodmarket 4.0 Pilot within the context of the Reflow-EU-project.
DOI: 10.5281/zenodo.6772871
title: REFLOW - Cluj Napoca Pilot Smart Meter Data

description: Smart Metering Data collected by the Pilot in Cluj Napoca within the context of the Reflow-EU-project.
DOI: 10.5281/zenodo.6772870
title: REFLOW - Cluj Napoca Pilot Smart Meter Data

description: Smart Metering Data collected by the Pilot in Cluj Napoca within the context of the Reflow-EU-project.
DOI: 10.5281/zenodo.6772788
title: REFLOW - Milan Foody Zero Waste Pilot Data

description: Data collected by the Milan Pilot within the Reflow-EU-project context.
DOI: 10.5281/zenodo.6772787
title: REFLOW - Milan Foody Zero Waste Pilot Data

description: Data collected by the Milan Pilot within the Reflow-EU-project context.
DOI: 10.25402/nmt.20178887
title: Supplementary Tables – Friedreich ataxia: clinical features and new developments

description: <strong>Supplementary Table 1: Clinical trials in FRDA</strong> List of all clinical trials for FRDA listed on clinicaltrials.gov in the past 14 years, emphasizing drug class, exact agent, outcome, special comments, and present status.
DOI: 10.25402/nmt.20178887.v1
title: Supplementary Tables – Friedreich ataxia: clinical features and new developments

description: <strong>Supplementary Table 1: Clinical trials in FRDA</strong> List of all clinical trials for FRDA listed on clinicaltrials.gov in the past 14 years, emphasizing drug class, exact agent, outcome, special comments, and present status.