cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/pt6zcftp58
title: Mechanisms of bimodal magmatism generation beneath Southwest Indian ridge: Implications for the variable composition of MORBs

description: Table S1. Chemical and isotopic compositions for lavas and scorias from the Southwest Indian ridge

 Table S2. Major, trace, volatile element of glasses and melt inclusions from SWIR reported here.

 Table S3. Sr isotopes of glass, plagioclase, melt inclusion from SWIR, and glass and plagioclase standards

 Table S4. Major element compositions for olivine and plagioclase from the Southwest Indian ridge

 Table S5. Volatile element of olivine and plagioclase from SWIR reported here

 Table S6. Average value for volatile element of glasses and melt inclusions in SWIR compared to seawater.

 Table S7. Helium concentrations and blank corrected isotopic ratios of glasses from Southwest Indian ridge reported here.

 Table S8. Modelling endmembers compositions of DMM, LCC and SCLM.
DOI: 10.6084/m9.figshare.13567742.v1
title: Supplementary Material for: Mortality Risk and Its Association with Geriatric Domain Deficits in Older Outpatients: The Amsterdam Ageing Cohort

description: <b><i>Introduction:</i></b> In older patients, life expectancy is determined by a complex interaction of multiple geriatric domains. A comprehensive geriatric assessment (CGA) captures different geriatric domains. Yet, if and how components of the CGA are related to mortality in an outpatient geriatric setting is unknown. In the Amsterdam Ageing Cohort, we therefore studied distribution and accumulation of geriatric domain deficits in relation to mortality. <b><i>Methods:</i></b> All patients received a CGA as part of standard care, independent of referral reason. We summarized deficits on the CGA, using predefined cutoffs, in 5 geriatric domains: somatic, mental, nutritional, physical, and social domain. Information on mortality was obtained from the Dutch municipal register. We used age- and sex-adjusted Cox proportional hazards analyses to relate the separate domains and accumulation of impaired domains to overall mortality. <b><i>Results:</i></b> From the 1,055 geriatric outpatients (53% female; age 79 ± 7 years), 172 patients (16%) had died after 1.7 ± 1.1 years. In 626 patients (59%), 3 or more domains were impaired. All domains were independently associated with mortality, with the highest hazard for the somatic domain (HR 3.7 [1.7–8.0]) and the lowest hazard for the mental domain (HR 1.5 [1.1–12.0]). In addition, accumulation of impaired domains showed a gradually increased mortality risk, ranging from HR 2.2 (0.8–6.1) for 2 domains to HR 9.6 (3.7–24.7) for all 5 domains impaired. <b><i>Conclusions:</i></b> This study provides evidence that impairment in multiple geriatric domains is highly prevalent and independently and cumulatively associated with mortality in an outpatient geriatric setting.
DOI: 10.6084/m9.figshare.17069888.v1
title: regression analysis

description: Regression analysis of the business environment well-being index is presented.
DOI: 10.6084/m9.figshare.15022662.v2
title: Bendixen et al 2021 One Earth

description: Data and code for Bendixen et al 2021 Sand, gravel and UN Sustainable Development Goals: conflicts, synergies and ways forward.<br>The files contains the following data:<br>Data_fig1a.csv - data used in panel figure 1a. Original source the Global Aggregates Information Network - gain.ie<br><br>Data_fig1b_sverdrup_data.csv - data used in panel figure 1b. Original source Sverdrup, H.U., Koca, D., and Schlyter, P. (2017). A Simple System Dynamics Model for the Global Production Rate of Sand, Gravel, Crushed Rock and Stone, Market Prices and Long-Term Supply Embedded into the WORLD6 Model. BioPhysical Economics and Resource Quality 2, 8. Data_fig2_Global_gdp.csv – Global GDP data used in figure 2 – original source https://datahub.io/core/gdp#readme Data_fig2_trade.csv – Global aggregate data used in figure 2 – downloaded from UN COMTRADE March 2020. Table S2.csv – data and fully argumented SDG analysis used to produce figure 3 and Table 1 Bendixen_FIgure1b.R – R code used to produce a draft version of panel figure 1b Bendixen_Figure2.R – R code used to produce a draft version of each panel figure in figure 2
DOI: 10.17632/jpmptvh9vv
title: RNA sensing induced by chromosome missegregation augments anti-tumor immunity. Sasaki et al.

description: Viral mimicry triggered by endogenous double-stranded RNA (dsRNA) stimulates innate and adaptive immune responses. However, the mechanisms that regulate dsRNA-forming transcripts and the contexts in which these transcripts accumulate in the cytoplasm during cancer therapy remain incompletely understood. In this study, we demonstrate that pharmacologic induction of micronuclei leads to significant accumulation of dsRNA in cancer cells, which activates MAVS-mediated dsRNA sensing in conjunction with the cGAS/STING pathway. These data, including western blotting, immunofluorescence, and immunocytochemistry images, reveal that pulsed treatment with a monopolar spindle 1 (MPS1) kinase inhibitor—an agent that effectively induces micronuclei formation—triggers cytoplasmic dsRNA sensing, promotes type I interferon signaling in vitro, and enhances anti-tumor immunity mediated by type I interferon signaling in vivo. These findings uncover a novel role of the dsRNA-sensing pathway in augmenting the anti-tumor efficacy of drugs that induce genomic instability and micronuclei formation, thereby enhancing cancer immunogenicity.
DOI: 10.6084/m9.figshare.7108583.v1
title: Ephydatia muelleri transcriptome

description: Transcriptome assembly and predicted peptides for the freshwater sponge Ephydatia muelleri, juvenile stage.
DOI: 10.15482/usda.adc/1529198
title: Data from: The effect of soil texture and pH on Meloidogyne hapla and Mesocriconema xenoplax parasitism in vineyard soils

description: Data set one: on the population density of Meloidogyne hapla after inoculated on varying soil pH and soil texture during the study. Data set one was used for calculations and associated analyses of the parameters presented in Fig 1.
Data set two: on the population density of Mesocriconema xenoplax after inoculated on varying soil pH and soil texture during the study, as well as associated plant metrics at harvest. Data set two was used for calculations and associated analyses of the parameters presented in Fig 2.
Data set three: on the population density of Meloidogyne hapla and Mesocriconema xenoplax after inoculated on varying soil pH and soil texture during the study and associated plant metrics at harvest. Data set three was used for calculations and associated analyses of the parameters presented in Fig 3, and 4.
Data set four: Root parameters measured using RhizoVision Explorer v2.0.3 on K-means clustered binary root mask images. Data set four was used for calculations and analysis of the parameters presented in Fig 5 and 6.
Data set five: Measured soil parameters. Data set fivewas used for calculations and associated analyses in Table 1.
*Note: Soil type is referred to as 'site' in all data sets. 'Site' was renamed to 'type' in the associated publication.
Resources in this dataset:


Resource Title: Data set 1: M. hapla
File Name: M. hapla - soil texture and pH on M. hapla and M. xenoplax.csv


Resource Title: Data set 2: M. xenoplax
File Name: M. xenoplax - soil texture and pH on M. hapla and M. xenoplax.csv


Resource Title: Data set 3: Nematode and host tomato metrics from harvest
File Name: Harvest - soil texture and pH on M. hapla and M. xenoplax.csv


Resource Title: Data set 4: Root measurements collected using RhizoVision Explorer v2.0.3 on tomato root images
File Name: Root images - soil texture and pH on M. hapla and M. xenoplax.csv
Resource Description: This data set was generated from RhizoVision Explorer v2.0.3, after preprocessing of root images. All root treatment data is the total of three seminal roots collected per treatment replicate; one from the top, middle, and bottom of the root mass.


Resource Title: Data set 5: Soil parameter data
File Name: Soil parameters - soil texture and pH on M. hapla and M. xenoplax.csv
Resource Description: There are only two repeats (n=2) for each treatment combination (nematode x site x pH), one from each experimental repeat (August, October).


Resource Title: Data Dictionary for all data sets
File Name: Data Dictionary - soil texture and pH on M. hapla and M. xenoplax.csv
Resource Description: Data Dictionary for all data sets for soil pH and texture effects on Meloidogyne hapla and Mesocriconema xenoplax, as well as host tomato metrics and soil metrics.
DOI: 10.6084/m9.figshare.19093742.v1
title: TableE8-PBS_and_EMT_differential_gene_expression–bulk_RNA-seq.xlsx

description: TableE8-PBS_and_EMT_differential_gene_expression–bulk_RNA-seq.xlsx
DOI: 10.6084/m9.figshare.12081795.v1
title: Fruit transect species richness by site and season

description: Fruit transect species compositions by site and season.<br>Analysed in: Climatic and resource determinants of forest elephant movements<br>
DOI: 10.17632/7pd8nthtpx
title: Level of Competence and Performance of Non-Teaching Personnel in the Pikit South District: A Basis for an Upskilling Program

description: Level of Competence and Performance of Non-Teaching Personnel in the Pikit South District: A Basis for an Upskilling Program" suggests that the focus of the research or study is to assess the competence (skills, knowledge, and abilities) and performance (effectiveness, productivity, and outcomes) of non-teaching staff within the Pikit South District educational system. The findings from this assessment are then intended to be used as a basis for creating an upskilling program, designed to improve the qualifications and performance of this personnel. 

This refers to how well the non-teaching personnel (such as administrative staff, janitors, clerks, security personnel, etc.) possess the skills and knowledge required to perform their jobs effectively. Competence could involve various factors such as: ability to use certain tools, software, chines relevant to the job, ability to communicate effectively to the students and teachers and other staff members, on how well they can handle unexpected situations or challenges. Understanding specific tasks, like bookeeping and records management. Also this study would likely involve assessments, surveys, or interviews to gauge how well non-teaching staff feel they can perform their duties and how competent they are in their roles.
DOI: 10.6084/m9.figshare.27325329.v1
title: RL Package dataset for example ex_SB3.py

description: OHLC Prices and technical indicators for RL Agent training<br>
DOI: 10.6084/m9.figshare.28823996.v1
title: 原始data.zip

description: METH 和 Tat 可以通过激活星形胶质细胞 TRPM2 离子通道来协调介导星形胶质细胞驱动的炎症，从而导致 BBB 损伤。这些发现强调星形胶质细胞介导的炎症是 METH 和 Tat 协同损害 BBB 的重要机制，TRPM2 通道代表了一个有前途的治疗靶点，为 METH 和 HIV-1 Tat 蛋白引起的神经毒性机制提供了新的见解。
DOI: 10.6084/m9.figshare.4769746.v1
title: Equine cartilage secretome 5 days IL-1 treatment in vitro; Progenesis semi tryptic peptides measurements file for input into the Neopeptide Analyser

description: Progenesis semitryptic peptide file for use as input into Neopeptide Analyser.<br>Experiment n=8 equine metacarpophalangeal cartilage explants from grossly normal joints treated in vitro with 10ng/ml IL-1 for 5 days. Secretome samples collected and pooled for 5 days. Media samples trypsin digested and run on an Orbitrap-Velos mass spectrometer. Raw files input into Progenesis QIP and label-free quantification undertaken with Mascot used to search for semi-tryptic peptides. Peptide measurements output file from ProgenesisQIP is then used as the input file into the 'Neopeptide Analyser' for neopeptide identification. Progenesis QIP peptide measurements file is for input into Neopeptide App for neopeptide identification.
DOI: 10.17632/8j7m8c5xw8
title: Journal of Islam and Social Sciences; No. 15

description: The journal is set to publish original articles on a wide range of issues including;

 Social philosophy: (in the Quran and other religious texts and the tradition, in the thought of Muslim scholars and comparison of different attitudes and approaches);
 Philosophy of social sciences: (in Islamic sources, convergence and divergence of different perspectives);
 Methodology of social sciences: (review of their function and their role in Islamic religious-Islamic social sciences);
 Social thoughts of Muslim thinkers: (social issues and strategic theories, theories, areas of sociology including sociology of religion, sociology of knowledge, historical sociology, cultural sociology);
 Religious theorizing (inferred from Islamic resources) on social issues;
 Reviewing and comparing social religious propositions of different religions with each other;
 Religious-Islamic sociology (subject, methods, theories, analysis and critique of approaches, goals and application, the relation of Islamic sociology with dominant paradigms in sociology, the role and application of Islamic sociology in Islamic and non-Islamic societies);

To let individual researchers and libraries have access to the most recent research findings in the field, the journal allows open-access to its articles. This journal utilizes the Magiran and Noormags preservation systems to create a distributed archiving system for individual and libraries and to permit libraries stakeholders to create permanent archives of the journal.
DOI: 10.6084/m9.figshare.28447610.v2
title: Vaginal Self-collection for primary HPV cervical cancer screening: An epidemiologic model

description: A cervical cancer screening model (based on human papillomavirus primary screening) that includes three groups: clinician-collection, under-/un-screened, and self-collection. The model is adjustable, with user inputs, to enable underlying variations in populations.
DOI: 10.6084/m9.figshare.11636433.v1
title: MOESM8 of A benchmark of batch-effect correction methods for single-cell RNA sequencing data

description: Additional file 8: Table S7. Rank and rank sums. The ranking of the batch correction methods for ARI, ASW, kBET, and LISI assessment metrics, and the rank sums for each method and the derived final rank for each dataset.
DOI: 10.6084/m9.figshare.12728294.v1
title: <b><i>South African Computer Journal </i></b><b><i>(1979 – 2023)</i></b>

description: This single journal study aims to provide an overview of the history and development of the <i>South African Computer Journal</i> (formerly <i>Quaestiones Informaticae</i>) over the 45 years from 1979 to 2023 ) alongside a bibliometric and altmetric analysis covering the 45 years from 1979 to 2023. Google Scholar was selected as the source of citation data, while Mendeley readership counts served as an alternative metric indicator. A total of 768 papers were analysed to assess annual article output, author productivity, authorship patterns and collaboration trends. The average number of articles published per year was 17. The journal exhibits a clear shift from single authorship to multi-authorship, with co-authored papers increasing from 22% (1979 to 1989) to 70% (1990 to 2023). Of the 768 articles, 60% had Google Scholar citations, while 40% remained uncited. The average number of Google Scholar citations per paper was 8.3 (1979 to 2023). From 1990 to 2023, 55% of papers had Mendeley readers compared to 60% with Google Scholar citations. The most productive authors were P. Kotze, D.G. Kourie, M.S. Olivier and I. Sanders.<br>
DOI: 10.6084/m9.figshare.25144715.v2
title: Shortening and asthenospheric-flow driven Miocene vertical-axis rotations of the NE Qaidam Basin, northern Tibetan Plateau

description: Paleomagnetic data and the calculated vertical-axis rotations from the northeastern Qaidam Basin.
DOI: 10.6084/m9.figshare.7584221.v1
title: Wildtype HEK293 nicastrin amplicon-seq - samtools flagstat

description: These are the samtools flagstat output for an amplicon-seq of HEK293 wildtype cells for a nicatrin amplicon.<br>
DOI: 10.6084/m9.figshare.1558327.v6
title: Utilizing Line Transect Methods for Sampling Common Milkweed Plants in Grassland near the Danby Woodlot at York University

description: The purpose of this observational study was to utilize the line transect method, i.e., a distance method, for sampling purposes, to meausre characteristics of the Common Milkweed plant (Asclepias syriaca), i.e., plant height, number of leaves, number of flowers, and level of crowding, and to use the distance on the transect measures from the plants as a means to estimate the population abundance of this plant species in the Grassland situated near the Danby Woodlot at York University, which is the location where this study was conducted. This study was conducted by group members Gajamugan Rajavarothayan, Gopaul Parbatie, Albert Lin, and Hannan Fayyaz from 3:25 pm to 4:00 pm EDT. A transect tape was randomly placed in a straight line stretching 20 meters in the Grassland situated near the Danby Woodlot at York University, specifically in an area that had the presence of the target plant species, i.e. the Common Milkweed plants. As we walked along the transect line, we recorded the distance on the transect whenever a Common Milkweed plant was visible near the transect tape, i.e. within 2 meters from the transect tape, to estimate the population abundance of this plant species in this Grassland area near Danby Woodlot at York University. We also measured the plant height using a second transect tape from the ground up to the tip of the largest leaf in the Common Milkweed plant, i.e.. the largest leaf in the plant was actually lifted to as high as possible and this height was recorded as the plant height. Gajamugan was the one who read all the measurements from the transect tape to ensure errors are minimized as the measurements for both the distance on the transect and plant height were recorded consistently by the same person. The number of leaves and number of flowers was recorded for each individual plant, and the level of crowding for each individual plant was scored from 0-3, whereby 0 = open, 1 = some plants nearby, 2 = quite a few plants nearby, and 3 = very crowded bunch of plants nearby within 50 cm. In total, our sample size, n, was 20 individual Common Milkweed plants. The conditions at this site at York University had an atmosphere temperature of 23 degrees Celsius, the weather was partly cloud, wind speed was 16 km/h blowing from the East, and the humidity level was 63% and the soils were not dry but rather they contained some moisture. The height of the grassland vegetation in area we used to sample the Common Milkweed plants was below 0.5 m, I.e., below knee level. However, in neighbouring grassland areas from our site that contained other plant species, the height of the grassland vegetation increased and was around 1-1.5 m, i.e., above knee level. Insects like lady bugs, bees, and flies flew around our site as well. Hence, overall these factors provided adequate conditions for viewing the plants and recording measurements from it.
DOI: 10.6084/m9.figshare.28821791.v1
title: Dataset for Delay dynamic Project.zip

description: This dataset includes behavioral data from a study investigating a novel dynamically adjusting delay discounting task in rats. The task allows trial-by-trial delay adjustments based on individual choice history, enabling a flexible and self-regulated decision-making paradigm. The data include individual rat choices, delay values, inter-trial intervals (ITIs), reward types, and timestamps across sessions. Also included are processed files for alternating choice analysis and quartile-based session summaries.
DOI: 10.6084/m9.figshare.7934645.v1
title: gVCF_HG02643

description: 1000 Genomes gVCF mapped to hs37d5 for HG02643. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/hngpw44b8z
title: National Culture and the Demand for Physical Money During the First Year of the COVID-19 Pandemic

description: This dataset contains data used in the paper titled "National Culture and the Demand for Physical Money During the First Year of the COVID-19 Pandemic." In it I searched if "national culture" variables had significant impacts on the money demand during the first year of the COVID-19 pandemic.

The main file of this dataset is the "20220923_final_dataset.xlsx" spreadsheet. Sheet "trimed_dataset_final" contains all the data used in the final regressions presented in the paper. In sheet "full_dataset_active", partial data on countries that did not make it into final analyses due to data gaps is also presented. Sheets "CiC", "GDP", "CPI'", "IR", "SI," and "NC" hold all the data on dependent and independent variables I have managed to collect. The origin of each data point is presented in the "data_sources_table." It should be noted that all data in this spreadsheet underwent transformation as described in the paper. However, all raw data is also included in this dataset (folder 'raw_data').

Data on CiC were primarily gathered from the IMF International Financial Statistics database (henceforth: IMF IFS; database: FASMBC_XDC), but for some countries the data were supplemented with the data from National Central Banks’.

Data on NC was taken from the Hofstede Insights consultancy (https://www.hofstede-insights.com/).

Data on GDP was primarily obtained from the IMF IFS (database: NGDP_XDC). Data gaps in this area were filled, if possible, directly from the National Statistical Offices’ (NSOs’) datasets. Because the study is based on monthly data, all quarterly data obtained was temporally disaggregated using the Denton-Cholette method (without an indicator series).

Data on CPI was obtained primarily from Bank for International Settlements (BIS) datasets (https://www.bis.org/statistics/cp.htm) and IMF IFS databases (database: PCPI_IX) [BIS data had precedence]. Data gaps in this area were filled, if possible, directly from the National Statistical Offices’ datasets.

Data on IR was obtained primarily from Bank for International Settlements (BIS) datasets (https://www.bis.org/statistics/cbpol.htm) and IMF IFS databases (databases: FPOLM_PA, FIMM_PA, and FIDR_PA) [BIS data had precedence]. Data gaps in this area were filled, if possible, directly from the National Central Banks’ datasets. Furthermore, data on IR were compiled using hierarchy suggested by the monetary transmission mechanism's: 'central bank policy rates' were given precedence; if those were unavailable,'money market rates' were used; and if those were also unavailable, data on 'deposit rates' were collected.

Data on SI was taken directly from the COVID-19 Government Response Tracker (https://www.bsg.ox.ac.uk/research/research-projects/covid-19-government-response-tracker or https://github.com/OxCGRT/covid-policy-tracker/tree/master/data).
DOI: 10.17632/mk5knn88rd
title: Data for: No evidence of flavour-nutrient learning in a two-week ‘home exposure’ study in humans

description: 2 week exposure to 117.5kcal or 0kcal flavoured beverage (calories by maltodextrin), with tara gum added as thickener or not. We assessed Liking for flavour in presence (CS+) and absence (CS-) of added ingredients. Satiety and expected satiety were also assessed.