cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.18710918.v1
title: Molecular characterization and pathogenicity of novel Malaysian chicken astrovirus isolates

description: Chicken astrovirus (CAstV) has for over a decade been associated with runting stunting syndrome, severe kidney disease and visceral gout, and white chick syndrome. However, knowledge of the molecular characteristics and pathogenicity of the virus in day-old specific pathogen-free (SPF) chicks is scarce. This study focused on the characterization of near-complete genome of three Malaysian CAstV isolates following virus propagation in SPF embryonated chicken eggs and pathogenicity in day-old SPF chicks. The three isolates demonstrated unique features including a point mutation in their intergenic regions and an additional stem-loop II-like motif (s2m) in <i>ORF-2</i>. Pairwise sequence comparison and phylogenetic analysis of the <i>ORF-2</i> amino acid sequence of the three isolates revealed an identity share of 86–91% with group B CAstVs while forming a new subgroup in addition to the known four subgroups (Bi, Bii, Biii and Biv) that exhibit high identity of between 95% and 100% within the subgroups. In the pathogenicity study, birds in the infected and exposed sentinel groups exhibited lethargy and diarrhoea 3 days post-inoculation (dpi) that declined by 6 dpi, and 20% growth retardation by 9 dpi. Mild lymphocytic aggregates in the duodenum, tubular degeneration and interstitial nephritis were observed in the intestines and kidneys, respectively, in both groups. In addition, the mean virus copy numbers of the cloacal swabs were log<sub>10</sub> 13.23 at 3 dpi and log<sub>10</sub> 9.04 at 6 dpi for the infected and exposed sentinels, respectively. The study suggests that the Malaysian isolates should be assigned to a new subgroup, Bv within group B CAstV. RESEARCH HIGHLIGHTSA single run of NGS protocol is capable of generating a near-complete genome sequence of CAstV.The Malaysian CAstV isolates cluster together and exhibit 86–91% identity with published group B CAstVs.The Malaysian CAstVs encode an additional stem-loop II-like motif (s2m) in ORF-2.The isolates are pathogenic to day-old SPF chicks with lesions mainly in the intestine and kidneys. A single run of NGS protocol is capable of generating a near-complete genome sequence of CAstV. The Malaysian CAstV isolates cluster together and exhibit 86–91% identity with published group B CAstVs. The Malaysian CAstVs encode an additional stem-loop II-like motif (s2m) in ORF-2. The isolates are pathogenic to day-old SPF chicks with lesions mainly in the intestine and kidneys.
DOI: 10.5281/zenodo.6125317
title: An updated checklist of Celastraceae in Vietnam

description: An updated checklist of Celastraceae in Vietnam: an extended version with references to protologues, synonymy, reference(s) for occurrence in Vietnam, links to species profiles in the taxonomic databases, and brief notes on taxonomy and distribution.
description: Supplementary material for: Pham N.H., Ren M.X., Nuraliev M.S., Trinh N.B., Nguyen T.D., Ragupathi G., Pham V.T. (2022) The genus Parnassia in Vietnam, and a checklist of Vietnamese Celastraceae. Phytotaxa
DOI: 10.5281/zenodo.6125316
title: An updated checklist of Celastraceae in Vietnam

description: An updated checklist of Celastraceae in Vietnam: an extended version with references to protologues, synonymy, reference(s) for occurrence in Vietnam, links to species profiles in the taxonomic databases, and brief notes on taxonomy and distribution.
description: Supplementary material for: Pham N.H., Ren M.X., Nuraliev M.S., Trinh N.B., Nguyen T.D., Ragupathi G., Pham V.T. (2022) The genus Parnassia in Vietnam, and a checklist of Vietnamese Celastraceae. Phytotaxa
DOI: 10.5281/zenodo.6125228
title: Viral Pathogens of Acute Gastroenteritis in Egyptian children: Role of Parechoviruses

description: The SPPS of the data
DOI: 10.5281/zenodo.6125227
title: Viral Pathogens of Acute Gastroenteritis in Egyptian children: Role of Parechoviruses

description: The SPPS of the data
DOI: 10.5281/zenodo.6125388
title: msd-errors - Data for AgCrSe2 figures

description: Data for the figures Results of the analysis of AgCrSe2 systems by kinisi at a series of temperatures.<br><br>Created using showyourwork from this GitHub repo.<br>
DOI: 10.5281/zenodo.6125392
title: Dataset for "Searching for a source without gradients: how good is infotaxis and how to beat it"

description: Dataset containing the results presented in "Searching for a source without gradients: how good is infotaxis and how to beat it".
DOI: 10.5281/zenodo.6125391
title: Dataset for "Searching for a source without gradients: how good is infotaxis and how to beat it"

description: Dataset containing the results presented in "Searching for a source without gradients: how good is infotaxis and how to beat it".
DOI: 10.5525/gla.researchdata.1248
title: Does Interacting Help Users Better Understand the Structure of Probabilistic Models?

description: The dataset includes the responses and demographics of participants in the evaluation user study of interactive visualizations of probabilistic models presented in the paper. The analysis code is also included.
DOI: 10.5281/zenodo.6122361
title: msd-errors - Random walk data

description: The data related to the random walk components of the msd-error work, including truly random and temporarily anti-correlated random walks at a series of system and step size. These have either be analysed numerically or analytically (using kinisi, WLS, or OLS).<br><br>Created using showyourwork from this GitHub repo.<br>
DOI: 10.17028/rd.lboro.19175261
title: Print Media Analysis

description: A summary of the media analysis conducted on the Tokyo 2020 (2021) online media articles from July 2021 to October 2021.
DOI: 10.17028/rd.lboro.19175261.v1
title: Print Media Analysis

description: A summary of the media analysis conducted on the Tokyo 2020 (2021) online media articles from July 2021 to October 2021.
DOI: 10.5281/zenodo.6125485
title: Data set from: Effect of curve location on the severity index for adolescent idiopathic scoliosis: a longitudinal cohort study

description: Data set from: Effect of curve location on the severity index for adolescent idiopathic scoliosis: a longitudinal cohort study
DOI: 10.5281/zenodo.6125484
title: Data set from: Effect of curve location on the severity index for adolescent idiopathic scoliosis: a longitudinal cohort study

description: Data set from: Effect of curve location on the severity index for adolescent idiopathic scoliosis: a longitudinal cohort study
DOI: 10.34740/kaggle/dsv/3197194
title: The state of hiring discrimination
DOI: 10.6084/m9.figshare.19189142.v1
title: CAD gene materials

description: The additional data and materials required for an article in publication progress.
DOI: 10.5517/cc4qvsg
title: CCDC 141136: Experimental Crystal Structure Determination

description: Related Article: W.Ziemkowska|2000|Main Group Met.Chem.|23|337|
DOI: 10.5281/zenodo.6125591
title: Results to "Macroeconomic Implications of High-End Sea Level Rise and Coastal Migration: A Global Assessment"

description: All results file for the manuscript "Macroeconomic Implications of High-End Sea Level Rise and Coastal Migration: A Global Assessment"
DOI: 10.5281/zenodo.6125590
title: Results to "Macroeconomic Implications of High-End Sea Level Rise and Coastal Migration: A Global Assessment"

description: All results file for the manuscript "Macroeconomic Implications of High-End Sea Level Rise and Coastal Migration: A Global Assessment"
DOI: 10.6084/m9.figshare.19189517
title: Table S2_Differential expression analysis between in vivo lineages

description: Supplementary tables S2, S3<br>
DOI: 10.6084/m9.figshare.19189517.v1
title: Table S2_Differential expression analysis between in vivo lineages

description: Supplementary tables S2, S3<br>
DOI: 10.5281/zenodo.6125906
title: Data set from: the potential of micro-CT for dating post-cranial bone fractures: a macroscopic, radiographic, and microtomography stud

description: Qualitative data set from: The potential of micro-CT for dating post-cranial bone fractures: a macroscopic, radiographic, and microtomography stud
DOI: 10.5281/zenodo.6125905
title: Data set from: the potential of micro-CT for dating post-cranial bone fractures: a macroscopic, radiographic, and microtomography stud

description: Qualitative data set from: The potential of micro-CT for dating post-cranial bone fractures: a macroscopic, radiographic, and microtomography stud
DOI: 10.5281/zenodo.6125920
title: UniFrac 330k sample phylogeny

description: A phylogeny containing 16S V4 rRNA fragments from hundreds of thousands of microbiome samples.
DOI: 10.5281/zenodo.6125919
title: UniFrac 330k sample phylogeny

description: A phylogeny containing 16S V4 rRNA fragments from hundreds of thousands of microbiome samples.
DOI: 10.25345/c5q87f
title: MassIVE MSV000088854 - Zhang_DDAnoDE_APMS_noDE_P63_6600
title: This dataset consists of 9 raw MS files and associated peak lists and results files, acquired on AB Sciex TripleTOF 6600 mass spectrometer operated in Data Dependent Acquisition mode. Samples were generated by Dushyandi Rajendran and Shen Zhang. Mass spectrometry acquisition was performed by Shen Zhang. Analysis was performed by Brett Larsen, Ji-Young Youn, Anne-Claude Gingras, and Shen Zhang. The files are associated with a manuscript submitted for publication by Shen Zhang et al. The main goal of this paper was to further optimize a no dynamic exclusion (noDE) strategy for analysis of protein-protein interactions. This dataset presents a noDE strategy which identifies more high confidence protein interactors than traditional data-dependent acquisition (DDA) with DE and data-independent acquisition (DIA) approaches. Anne-Claude Gingras is the corresponding author of the manuscript (gingras@lunenfeld.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca)
DOI: 10.5281/zenodo.6126147
title: Metadata for hundreds of thousands of samples

description: Sample metadata for hundreds of thousands of samples
DOI: 10.5281/zenodo.6126146
title: Metadata for hundreds of thousands of samples

description: Sample metadata for hundreds of thousands of samples
DOI: 10.5281/zenodo.6125854
title: msd-errors - Data for the LLZO figure

description: Data for the figure showing the diffusion and Arrhenius plots for a short simulation of LLZO. <br><br>Created using showyourwork from this GitHub repo.<br>
DOI: 10.6084/m9.figshare.19189541
title: Online CBC commentary around Nova Scotia deemed consent announcement

description: Anonymized public commentary consisting of comments and replies on two online CBC articles presenting the announcement of deemed consent legislation in Nova Scotia
DOI: 10.6084/m9.figshare.19189541.v1
title: Online CBC commentary around Nova Scotia deemed consent announcement

description: Anonymized public commentary consisting of comments and replies on two online CBC articles presenting the announcement of deemed consent legislation in Nova Scotia
DOI: 10.6084/m9.figshare.16680892
title: Datasets for "Does a suspensory lifestyle result in increased tensile strength? Material and mechanical properties of sloth limb bones"

description: Two CSV-formatted spreadsheets of material properties data in compression and bending for <i>Choloepus hoffmanni</i>, <i>Bradypus variegatus</i>, <i>Rattus norvegicus,</i> <i>Alouatta caraya</i>, and <i>Chlorocebus aethiops</i>.
DOI: 10.6084/m9.figshare.16680892.v1
title: Datasets for "Does a suspensory lifestyle result in increased tensile strength? Material and mechanical properties of sloth limb bones"

description: Two CSV-formatted spreadsheets of material properties data in compression and bending for <i>Choloepus hoffmanni</i>, <i>Bradypus variegatus</i>, <i>Rattus norvegicus,</i> <i>Alouatta caraya</i>, and <i>Chlorocebus aethiops</i>.
DOI: 10.5255/ukda-sn-855440
title: Adult Aging and Social Attention Data, 2018-2020

description: These data sets present behavioural and eye-tracking data from five experiments looking at the effects of adult aging on gaze cueing. Experiment 1 looked at age differences in gaze cueing when varying face type (schematic, young, old) and stimulus onset asynchrony (SOA: 100ms, 300ms, 600ms, 1000ms). Experiment 2 investigated age differences in gaze cueing when varying familiarity of the face. In experiment 3 we looked at the effects of a dual task load on age differences in gaze cueing. These three experiments used a traditional gaze cueing paradigm. The final two studies looked at gaze cueing in realistic scenes. Experiment 4 evaluated age differences in using gaze cues in a real scene during a search task, while Experiment 5 looked at naturalistic gaze behaviour while free-viewing complex social scenes.
DOI: 10.7298/q3hb-zq56
title: Data from: The Physiological Basis for Estimating Photosynthesis from Chlorophyll a Fluorescence
DOI: 10.5281/zenodo.6126308
title: Feature table of nearly 330k 16S V4 rRNA microbiome samples

description: Feature table of nearly 330k 16S V4 rRNA microbiome samples
DOI: 10.5281/zenodo.6126307
title: Feature table of nearly 330k 16S V4 rRNA microbiome samples

description: Feature table of nearly 330k 16S V4 rRNA microbiome samples
DOI: 10.7910/dvn/2znifv/akck7e
title: ICTRP Analysis Dataset.xlsx

description: Curated analysis dataset to reproduce the manuscript results.
DOI: 10.5281/zenodo.6126424
title: Principal coordinates for hundreds of thousands of 16S V4 rRNA samples

description: Principal coordinates for hundreds of thousands of 16S V4 rRNA samples
DOI: 10.5281/zenodo.6126423
title: Principal coordinates for hundreds of thousands of 16S V4 rRNA samples

description: Principal coordinates for hundreds of thousands of 16S V4 rRNA samples
DOI: 10.7910/dvn/2znifv/rddirk
title: Supplemental Material 2-5.docx

description: Supplementary Material 2-5 - Countries in each geographic region table, Number of studies registered table, Intention to share IPD table, Intention to share IPD graph
DOI: 10.6084/m9.figshare.19189568
title: Source Data files

description: Source Data files
DOI: 10.5281/zenodo.6122201
title: Generic solving of a multi-compartment kinetic model

description: This repository makes available supplementary material related to a scientific paper in progress.
DOI: 10.11571/upei-roblib-data/researchdata:766
title: Search strategies for dietary berry polyphenols, blood pressure and the intestinal microbiota: A systematic review
DOI: 10.6084/m9.figshare.19189671
title: A review of the main tectonic settings of Palaeo-and-Mesoarchean ore deposits in the northern São Francisco Craton, NE Brazil

description: This work is based on the unprecedented Tectonic-Geochronological Map of Bahia (TGMBA): metallogenic implications. In the TGMBA, sixteen tectonic domains were identified, and the main mineral occurrences and deposits in each were recorded. Of the Palaeo-Mesoarchean blocks, the Gavião (GB), Serrinha (SB) and Uauá (UB) blocks were highlighted. The southern GB was formed by plate tectonics, in two stages, at ca. 3403–3378 and 3259–3240 Ma. These rocks served as basement for the Umburanas Greenstone Belt, which comprises felsic metavolcanic rocks (3147 Ma) interspersed with ocean floor mafic metavolcanics and could have been the source of the recently found orogenic gold. This crust could also have formed the basal section of the Brumado metavolcanic-sedimentary sequence, which hosts one of the most important magnesite mines in the world. The northern part of the GB hosts TTGs with ages of ca. 3642–3520 Ma, the oldest known rocks in the whole São Francisco Craton. This region served as a passive margin for the Jacobina-Umburanas Sea, where quartzites and conglomerates (3305 Ma) with detrital gold were deposited and, in the deeper portions of this sea, Mesoarchean ocean floor or Island-arc basalts (3200 Ma) with pillow-lava structures were formed. On the platform of this basin, Mn deposits were formed in association with pelites and sandstones
DOI: 10.6084/m9.figshare.19189671.v1
title: A review of the main tectonic settings of Palaeo-and-Mesoarchean ore deposits in the northern São Francisco Craton, NE Brazil

description: This work is based on the unprecedented Tectonic-Geochronological Map of Bahia (TGMBA): metallogenic implications. In the TGMBA, sixteen tectonic domains were identified, and the main mineral occurrences and deposits in each were recorded. Of the Palaeo-Mesoarchean blocks, the Gavião (GB), Serrinha (SB) and Uauá (UB) blocks were highlighted. The southern GB was formed by plate tectonics, in two stages, at ca. 3403–3378 and 3259–3240 Ma. These rocks served as basement for the Umburanas Greenstone Belt, which comprises felsic metavolcanic rocks (3147 Ma) interspersed with ocean floor mafic metavolcanics and could have been the source of the recently found orogenic gold. This crust could also have formed the basal section of the Brumado metavolcanic-sedimentary sequence, which hosts one of the most important magnesite mines in the world. The northern part of the GB hosts TTGs with ages of ca. 3642–3520 Ma, the oldest known rocks in the whole São Francisco Craton. This region served as a passive margin for the Jacobina-Umburanas Sea, where quartzites and conglomerates (3305 Ma) with detrital gold were deposited and, in the deeper portions of this sea, Mesoarchean ocean floor or Island-arc basalts (3200 Ma) with pillow-lava structures were formed. On the platform of this basin, Mn deposits were formed in association with pelites and sandstones
DOI: 10.15472/ami6jj
title: Lista de especies representadas en las áreas protegidas de la Orinoquia Colombiana.

description: Contiene lista con 2094 registros de especies documentadas en las áreas protegidas de la Orinoquia Colombiana, construida por medio de la recopilación de importantes fuentes de información de especies accedidas a través del Visor de información Geográfica del Sistema de Información de Biodiversidad de Colombia y consignadas en el documento técnico del contrato No. 12-058PS llevado a cabo en el año 2012 y estructuradas como parte del contrato 15-062PS de 2015.
DOI: 10.5281/zenodo.6126368
title: Supplementary Data - Using landscape genomics to infer genomic regions involved in environmental adaptation of soybean genebank accessions

description: <strong>File: 50K_GenotypesEU_raw_UHOH_SoySNP50K.csv.tgz </strong> Genotyping data of SoySNP50k SNP array of 170 European soybean varieties. The array includes 51.955 SNP markers. Genotypes of each variety are in columns and each row is a SNP marker. Naming of markers follows the annotation of the soybean genome. <strong>File: EUvarieties_infos.csv </strong> Description of European varieties Contains variety name, country of origin, EU region and maturity group assignment. <strong>File: Supplementary_Data_Haupt_Schmid.xlsx</strong> Additional data derived from data analysis. Description of data contained within file (Worksheet "Summary")
DOI: 10.5281/zenodo.6126367
title: Supplementary Data - Using landscape genomics to infer genomic regions involved in environmental adaptation of soybean genebank accessions

description: <strong>File: 50K_GenotypesEU_raw_UHOH_SoySNP50K.csv.tgz </strong> Genotyping data of SoySNP50k SNP array of 170 European soybean varieties. The array includes 51.955 SNP markers. Genotypes of each variety are in columns and each row is a SNP marker. Naming of markers follows the annotation of the soybean genome. <strong>File: EUvarieties_infos.csv </strong> Description of European varieties Contains variety name, country of origin, EU region and maturity group assignment. <strong>File: Supplementary_Data_Haupt_Schmid.xlsx</strong> Additional data derived from data analysis. Description of data contained within file (Worksheet "Summary")
DOI: 10.25919/6qwm-cw54
title: Parkes observations for project P595 semester 2021OCTS_12

description: We propose to continue the PULSE@Parkes project in which high school students from Australia and around the World use the Parkes radio telescope in a remote observing model to observe and analyse pulsar data. The data from some PULSE@Parkes observations are used to support the space missions, other observations supplement the P456 Pulsar Timing Array project and the remainder were chosen in order to make a detailed analysis of pulsar timing irregularities and intermittency.
DOI: 10.6084/m9.figshare.18561203.v1
title: Online education-systematic review

description: This is a dataset for the article Online education: a systematic review and meta-analysis
DOI: 10.21335/nmdc-2116003163
title: Seasonality of suspended biomass (Chl a, POC), zooplankton, and vertical export (Chl a, POC) at 69.746° N, 18.683° E (Kaldfjorden, Troms, Norway), Oct 2017 - May 2018

description: The dataset consists of analysed water samples collected at 69.746° N, 18.683° E (station KaF) in Kaldfjorden, Troms, between October 2017 and May 2018. Water samples were taken monthly with a Niskin bottle at 4 sampling depths. The chlorophyll a (Chl a) and the phaeophytine (Phaeo) concentrations were determined after filtering the water (vacuum filtration, Whatman GF/F filters) in triplicates and analyses of the filters in a fluorometer (extration in methanol, acidification method). In addition, water samples were vacuum filtered in tripicates (on pre-burned GF/F filters) and analyzed for particulate organic carbon (POC) and nitrogen (PON) using a CHN analyzer. Besides the water samples, short-term sediment traps (KC Denmark) were deployed for ~24 h every month at station KaF (4 sampling depths). Water and sinking particles in the sediment trap cylinders have been analyzed as described for the water samples for Chla, POC, and PON. Moreover, two vertical WP-2 zooplankton net hauls (180 µm mesh size) have been taken each months (100-50 m, 50-0 m). Zooplankton has been preserved (Zoofix) and was then analyzed using a stereomicroscope.
DOI: 10.5517/cc3q5b9
title: CCDC 110680: Experimental Crystal Structure Determination

description: Related Article: F.Belaj|1994|Z.Krist.Cryst.Mater.|209|375|
DOI: 10.5517/ccnlhf4
title: CCDC 613596: Experimental Crystal Structure Determination

description: Related Article: Wen-Zhi Zhang|2006|Acta Crystallogr.,Sect.E:Struct.Rep.Online|62|m1600|doi:10.1107/S1600536806022884
DOI: 10.5281/zenodo.6124808
title: CG molecular dynamics simulations. Supporting data for "Improving the global dimensions of intrinsically disordered proteins in Martini 3".

description: <pre>Coarse-grained molecular dynamics simulations with Martini 3 with varying rescaling of protein-water interactions. Supporting data for "Improving the global dimensions of intrinsically disordered proteins in Martini 3".</pre>
DOI: 10.5517/ccnlhg5
title: CCDC 613597: Experimental Crystal Structure Determination

description: Related Article: Hong-Ping Xiao|2006|Acta Crystallogr.,Sect.E:Struct.Rep.Online|62|m1611|doi:10.1107/S1600536806022781
DOI: 10.5517/ccnlkwn
title: CCDC 613672: Experimental Crystal Structure Determination

description: Related Article: Wen-Zhong Ge|2006|Acta Crystallogr.,Sect.E:Struct.Rep.Online|62|o3109|doi:10.1107/S1600536806024147
DOI: 10.5517/ccnllmf
title: CCDC 613695: Experimental Crystal Structure Determination

description: Related Article: Guang-Bo Che|2006|Acta Crystallogr.,Sect.E:Struct.Rep.Online|62|m1535|doi:10.1107/S1600536806021246
DOI: 10.5517/ccnllph
title: CCDC 613697: Experimental Crystal Structure Determination

description: Related Article: P.Vaqueiro|2006|Acta Crystallogr.,Sect.E:Struct.Rep.Online|62|o2632|doi:10.1107/S1600536806020988
DOI: 10.5517/ccnllwp
title: CCDC 613703: Experimental Crystal Structure Determination

description: Related Article: Shao-Fa Sun|2006|Acta Crystallogr.,Sect.E:Struct.Rep.Online|62|o3107|doi:10.1107/S1600536806024457
DOI: 10.5517/ccnlmpj
title: CCDC 613728: Experimental Crystal Structure Determination

description: Related Article: Jin-Long Wu|2006|Acta Crystallogr.,Sect.E:Struct.Rep.Online|62|o2967|doi:10.1107/S1600536806022896
DOI: 10.5517/ccnln0w
title: CCDC 613738: Experimental Crystal Structure Determination

description: Related Article: Da-Qi Wang|2006|Acta Crystallogr.,Sect.E:Struct.Rep.Online|62|m1565|doi:10.1107/S1600536806022136