cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25413/sun.28868396
title: Strong effect of demographic changes on Tuberculosis susceptibility in South Africa

description: South Africa is among the world’s top eight tuberculosis (TB) burden countries, and despite a focus on HIV-TB co-infection, most of the population living with TB are not HIV co-infected. The disease is endemic across the country, with 80–90% exposure by adulthood. We investigated epidemiological risk factors for (TB) in the Northern Cape Province, South Africa: an understudied TB endemic region with extreme TB incidence (926/100,000). We leveraged the population’s high TB incidence and community transmission to design a case-control study with similar mechanisms of exposure between the groups. We recruited 1,126 participants with suspected TB from 12 community health clinics and generated a cohort of 774 individuals (cases = 374, controls = 400) after implementing our enrollment criteria. All participants were GeneXpert Ultra tested for active TB by a local clinic. We assessed important risk factors for active TB using logistic regression and random forest modeling. We find that factors commonly identified in other global populations tend to replicate in our study, e.g. male gender and residence in a town had significant effects on TB risk (OR: 3.02 [95% CI: 2.30–4.71]; OR: 3.20 [95% CI: 2.26–4.55]). We also tested for demographic factors that may uniquely reflect historical changes in health conditions in South Africa. We find that socioeconomic status (SES) significantly interacts with an individual’s age (<i>p</i> = 0.0005) indicating that protective effect of higher SES changed across age cohorts. We further find that being born in a rural area and moving to a town strongly increases TB risk, while town birthplace and current rural residence is protective. These interaction effects reflect rapid demographic changes, specifically SES over recent generations and mobility, in South Africa. Our models show that such risk factors combined explain 19–21% of the variance (r<sup>2</sup>) in TB case/control status.
DOI: 10.25413/sun.28868396.v1
title: Strong effect of demographic changes on Tuberculosis susceptibility in South Africa

description: South Africa is among the world’s top eight tuberculosis (TB) burden countries, and despite a focus on HIV-TB co-infection, most of the population living with TB are not HIV co-infected. The disease is endemic across the country, with 80–90% exposure by adulthood. We investigated epidemiological risk factors for (TB) in the Northern Cape Province, South Africa: an understudied TB endemic region with extreme TB incidence (926/100,000). We leveraged the population’s high TB incidence and community transmission to design a case-control study with similar mechanisms of exposure between the groups. We recruited 1,126 participants with suspected TB from 12 community health clinics and generated a cohort of 774 individuals (cases = 374, controls = 400) after implementing our enrollment criteria. All participants were GeneXpert Ultra tested for active TB by a local clinic. We assessed important risk factors for active TB using logistic regression and random forest modeling. We find that factors commonly identified in other global populations tend to replicate in our study, e.g. male gender and residence in a town had significant effects on TB risk (OR: 3.02 [95% CI: 2.30–4.71]; OR: 3.20 [95% CI: 2.26–4.55]). We also tested for demographic factors that may uniquely reflect historical changes in health conditions in South Africa. We find that socioeconomic status (SES) significantly interacts with an individual’s age (<i>p</i> = 0.0005) indicating that protective effect of higher SES changed across age cohorts. We further find that being born in a rural area and moving to a town strongly increases TB risk, while town birthplace and current rural residence is protective. These interaction effects reflect rapid demographic changes, specifically SES over recent generations and mobility, in South Africa. Our models show that such risk factors combined explain 19–21% of the variance (r<sup>2</sup>) in TB case/control status.
DOI: 10.15468/dl.2kej4j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Herwigia kreffti (Nielsen & Larsen, 1970)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.6841 -13.2744,44.9648 -13.45,44.9648 -12.0572,44.6243 -11.5921,43.9413 -11.6518,43.8001 -11.0974,43.4999 -10.8854,43.0582 -10.9337,42.804 -11.2068,42.7621 -11.9579,43.3325 -12.7962,44.5603 -12.8747,44.6841 -13.2744))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009719-250525065834625/datasets/export for details.
DOI: 10.15468/dl.5z6rs3
title: Occurrence Download

description: A dataset containing 6520 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is South Africa",
 "DatasetKey is one of (iNaturalist Research-grade Observations, African Plants - a photo guide, NABU|naturgucker, Pl@ntNet observations)",
 "Geometry POLYGON((17.8748 -30.47993,16.69875 -31.77977,18.40092 -35.46265,25.3953 -34.99842,27.5617 -33.82237,27.12842 -33.07961,25.64289 -32.92486,22.76467 -32.61538,21.55768 -32.58443,19.54602 -30.91321,17.8748 -30.47993))",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Grubbiaceae, Roridulaceae, Geissolomataceae, Penaeaceae)",
 "Year 2000-2025"
 ]
}

 The dataset includes 6520 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006587-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/j6hn2ptym2.1
title: AIoT-Driven Business Intelligence and Supply Chain Optimization: Real-Time Insights for Strategic Decision-Making and Sustainable Operations

description: This research introduces a comprehensive framework for integrating Artificial Intelligence of Things (AIoT) into modern supply chain management. We examine five AIoT-enabled applications: dynamic fleet routing, supplier risk monitoring, autonomous inventory replenishment, Just-in-Time (JIT) delivery optimization, and warehouse robotics coordination. Synthetic datasets and machine learning models—ranging from regression to classification and reinforcement learning—simulate predictive scenarios for each domain. Our findings underscore measurable improvements in delivery efficiency, risk mitigation, and sustainability. This study demonstrates how AIoT facilitates real-time decision-making, enhances resilience, and fosters eco-conscious operations in complex supply chain ecosystems.
DOI: 10.5281/zenodo.17594779
title: Chua et al. 2025 Kymographs of PCNA, RFC, RFCdBRCT, FEN1, and PolD on Gapped DNA

description: Full kymographs of PCNA, RFC, RFCdBRCT, FEN1, and/or PolD on gapped DNA. Associated with manuscript by Chua et al. 2025.
DOI: 10.5281/zenodo.17594778
title: Chua et al. 2025 Kymographs of PCNA, RFC, RFCdBRCT, FEN1, and PolD on Gapped DNA

description: Full kymographs of PCNA, RFC, RFCdBRCT, FEN1, and/or PolD on gapped DNA. Associated with manuscript by Chua et al. 2025.
DOI: 10.13012/b2idb-9904353_v1
title: Data for Rapid and Efficient in planta Genome Editing in Sorghum Using Foxtail Mosaic Virus-mediated sgRNA Delivery

description: The requirement of in vitro tissue culture for the delivery of gene editing reagents limits the application of gene editing to commercially relevant varieties of many crop species. To overcome this bottleneck, plant RNA viruses have been deployed as versatile tools for in planta delivery of recombinant RNA. Viral delivery of single-guide RNAs (sgRNAs) to transgenic plants that stably express CRISPR-associated (Cas) endonuclease has been successfully used for targeted mutagenesis in several dicotyledonous and few monocotyledonous plants. Progress with this approach in monocotyledonous plants is limited so far by the availability of effective viral vectors. We engineered a set of foxtail mosaic virus (FoMV) and barley stripe mosaic virus (BSMV) vectors to deliver the fluorescent protein AmCyan to track viral infection and movement in Sorghum bicolor. We further used these viruses to deliver and express sgRNAs to Cas9 and Green Fluorescent Protein (GFP) expressing transgenic sorghum lines, targeting Phytoene desaturase (PDS), Magnesium-chelatase subunit I (MgCh), 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, orthologs of maize Lemon white1 (Lw1) or GFP. The recombinant BSMV did neither infect sorghum nor deliver or express AmCyan and sgRNAs. In contrast, the recombinant FoMV systemically spread throughout sorghum plants and induced somatic mutations with frequencies reaching up to 60%. This mutagenesis led to visible phenotypic changes, demonstrating the potential of FoMV for in planta gene editing and functional genomics studies in sorghum.
DOI: 10.57830/2314531
title: Field data for the Vegetation Mapping Inventory Project of El Malpais National Monument - Open Format Data Package

description: These data were converted from the originally delivered Microsoft Access PLOTs database from the Vegetation Mapping Inventory Project of El Malpais National Monument.  These comma-delimited data tables contain(s) vegetation mapping plot classification and accuracy assessment data, as well as summary information about the data itself. If a table is empty, then it was empty in the original database.
DOI: 10.15468/dl.vc877x
title: Occurrence Download

description: A dataset containing 712687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acer platanoides",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 712687 records from 1814 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029661-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1132552
title: Images from an Archaeological Watching Brief at Hogsty End Quaker Burial Ground, Hardwick Road, Woburn Sands, Milton Keynes, Buckinghamshire, March 2022

description: This collection consists of images from an archaeological watching brief by Albion Archaeology. Work occurred at Hogsty End Quacker burial ground, Hardwick Road, Woburn Sands, Milton Keynes, Buckinghamshire, in March 2022. One grave was partially revealed within the north-east corner of the foundation pit. Skeletal remains were not encountered, and the grave was not investigated past the depth required for the foundation pit. Undisturbed geological deposits were encountered at a depth of 0.65 metres, a post-medieval brick fragment and single sherd of pottery were recovered from the subsoil.
DOI: 10.25378/janelia.23969052
title: Isotropic 3D electron microscopy (FIB-SEM) data of mouse guard hair follicle (jrc_mus-guard-hair-follicle)

description: <b>Sample:</b> Guard hair follicle from the back of a 3-week-old C57BL/6J WT mouse<b>Sample Description:</b> Across mammalian skin, structurally complex and diverse mechanosensory end organs respond to mechanical stimuli and enable our perception of dynamic, light touch. How forces act on morphologically dissimilar mechanosensory end organs of the skin to gate the requisite mechanotransduction channel Piezo2 and excite mechanosensory neurons is not understood. Here, we report high-resolution reconstructions of the hair follicle lanceolate complex, Meissner corpuscle, and Pacinian corpuscle and the subcellular distribution of Piezo2 within them. Across all three end organs, Piezo2 is restricted to the sensory axon membrane, including axon protrusions that extend from the axon body. These protrusions, which are numerous and elaborate extensively within the end organs, tether the axon to resident non-neuronal cells via adherens junctions. These findings support a unified model for dynamic touch in which mechanical stimuli stretch hundreds to thousands of axon protrusions across an end organ, opening proximal, axonal Piezo2 channels and exciting the neuron.This dataset contains the FIB-SEM data of a guard hair follicle from the back of a 3-week-old C57BL/6J mouse.<b>Protocol:</b> Samples were dissected and drop fixed in glutaraldehyde and paraformaldehyde, and then osmicated with osmium tetroxide and potassium ferrocyanide, followed by osmium tetroxide only. Samples were subsequently stained with uranyl acetate and samarium chloride. Samples were dehydrated with an ethanol series followed by anhydrous acetone, infiltrated with Durcupan resin, and cured at 60°C.<b>Contributions:</b> Sample provided by Annie Handler (Harvard Medical School/HHMI) and Qiyu Zhang (Harvard Medical School/HHMI), prepared for imaging by Song Pang (HHMI/Janelia, currently at Yale School of Medicine), imaged by Song Pang and C. Shan Xu (HHMI/Janelia, currently at Yale School of Medicine), post data registration by C. Shan Xu, global image alignment and processing by Annie Handler and Qiyu Zhang, automatic segmentation by Tri M. Nguyen (Harvard Medical School) under the supervision of Wei-Chung Allen Lee (Harvard Medical School), ground truth annotation by Rebecca Plumb, Brianna Sanchez, Karyl Ashjian, Aria Shotland, Bartianna Brown, Madiha Kabeer, Nusrat Africawala, Stuart Cattel, Annie Handler, and Qiyu Zhang (all Harvard Medical School/HHMI), and segmentation proofreading by Annie Handler, Qiyu Zhang, and Michael Nolan-Tamariz (Harvard Medical School/HHMI).<b>Acquisition ID:</b> jrc_mus-guard-hair-follicle<b>Voxel size (nm):</b> 6 x 6 x 6 (x, y, z)<b>Data dimensions (µm): </b>88.1 x 95.9 x 77.6 (x, y, z)<b>Scanning speed (MHz): </b>1<b>Dataset URL: </b>s3://janelia-cosem-datasets/jrc_mus-guard-hair-follicle/jrc_mus-guard-hair-follicle<b>Visualization Website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-guard-hair-follicle<b>Publication:</b> Handler et al., 2023<br>
DOI: 10.6084/m9.figshare.29212778.v1
title: Beyond the title-deed division – developing a holistic framework for characterising mature cadastral systems

description: Cadastral systems are widely recognised as important tools for providing trusted spatial data to benefit the society. To provide a tool for evaluation and comparison of mature cadastral systems, and for an in-depth understanding of their role and value, we review existing literature to develop a holistic framework and illustrate its applicability via a case study. The framework highlights the importance of considering a wide variety of features to accurately characterise mature systems. The case study findings indicate that the framework facilitates evaluation of mature cadastral systems and finding meaningful differences between systems.
DOI: 10.15468/dl.xkhdsy
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex crispus",
 "Country is Kyrgyzstan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024509-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ygbskh
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is BIRDRACE Stuttgart 100 trööt"
 ]
}

 The dataset includes 100 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012925-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x7nw26
title: Occurrence Download

description: A dataset containing 362 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asarum blumei Duch."
 ]
}

 The dataset includes 362 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003828-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dks7wr
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ruppia L.",
 "Year 2018-2025"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009428-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zawsk
title: Occurrence Download

description: A dataset containing 402097 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Cyatheales"
 ]
}

 The dataset includes 402097 records from 1082 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007047-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15482/usda.adc/28773476
title: Data from: Exploring soil ecology gradient concepts: Sensitivity of ecosystem properties to symbiotic fungi in semiarid prairie

description: Dataset that accompanies a research paper entitled, "Exploring soil ecology gradient concepts: Sensitivity of ecosystem properties to symbiotic fungi in semiarid prairie" to be submitted to a peer-reviewed journal. Journal information will be updated when paper is published. Files include a readme file, datasets, and the respective R script for analyzing the individual data files.Results are relevant to arid and semiarid mixed-grass prairie ecosystems with calcareous and alkaline subsoils, especially sites with soils of Eapa loam soil series, frigid Aridic Argiustolls or Mollisols. The focal system was of northern mixed-grass prairie vegetation near Miles City, Montana which is in eastern Montana, USA (46.304583, -105.978050, elevation 849 m).The study consisted of a five year field experiment and two complementary pot bioassays. The experiments were designed to improve understanding effects of mycorrhizal fungi on plant properties, soil structure, and soil hydrologic functioning. We performed experiments and evaluated evidence of AMF (arbuscular mycorrhizal fungi) effects on plants, plant-plant interactions, plant nutrient limitation, and nutrient acquisition strategy. First, we tested how AMF suppression affected plant biomass and composition; indicators of plant nutrient limitation (i.e. shoot nitrogen-to-phosphorus ratio, N:P) and P acquisition (i.e. shoot manganese concentration, [Mn]); and structure and function of soil with a five-year field experiment. This informed pot bioassays. Pot bioassays tested how dominant grass coexistence was affected by three pairs of soil treatments 1) field soil inoculant (FSI) versus FSI with AMF suppression, 2) FSI versus sterilized FSI, and 3) AMF inoculant versus sterilized AMF inoculant.
DOI: 10.15482/usda.adc/28773476.v1
title: Data from: Exploring soil ecology gradient concepts: Sensitivity of ecosystem properties to symbiotic fungi in semiarid prairie

description: Dataset that accompanies a research paper entitled, "Exploring soil ecology gradient concepts: Sensitivity of ecosystem properties to symbiotic fungi in semiarid prairie" to be submitted to a peer-reviewed journal. Journal information will be updated when paper is published. Files include a readme file, datasets, and the respective R script for analyzing the individual data files.Results are relevant to arid and semiarid mixed-grass prairie ecosystems with calcareous and alkaline subsoils, especially sites with soils of Eapa loam soil series, frigid Aridic Argiustolls or Mollisols. The focal system was of northern mixed-grass prairie vegetation near Miles City, Montana which is in eastern Montana, USA (46.304583, -105.978050, elevation 849 m).The study consisted of a five year field experiment and two complementary pot bioassays. The experiments were designed to improve understanding effects of mycorrhizal fungi on plant properties, soil structure, and soil hydrologic functioning. We performed experiments and evaluated evidence of AMF (arbuscular mycorrhizal fungi) effects on plants, plant-plant interactions, plant nutrient limitation, and nutrient acquisition strategy. First, we tested how AMF suppression affected plant biomass and composition; indicators of plant nutrient limitation (i.e. shoot nitrogen-to-phosphorus ratio, N:P) and P acquisition (i.e. shoot manganese concentration, [Mn]); and structure and function of soil with a five-year field experiment. This informed pot bioassays. Pot bioassays tested how dominant grass coexistence was affected by three pairs of soil treatments 1) field soil inoculant (FSI) versus FSI with AMF suppression, 2) FSI versus sterilized FSI, and 3) AMF inoculant versus sterilized AMF inoculant.
DOI: 10.15482/usda.adc/28195697
title: Data from: Experimental evidence that poor soil phosphorus (P) solubility typical of drylands due to calcium co-precipitation favors autonomous plant P acquisition over collaboration with mycorrhizal fungi

description: Dataset that accompanies a research paper entitled, "Experimental evidence that poor soil phosphorus (P) solubility typical of drylands due to calcium co-precipitation favors autonomous plant P acquisition over collaboration with mycorrhizal fungi" published in Soil Biology and Biochemistry September 28, 2024. Files include a readme file, bioassay datasets, and the respective R script for analyzing the individual data files.Results are relevant to arid and semiarid mixed-grass prairie ecosystems with calcareous and alkaline subsoils, especially sites with soils of Eapa loam soil series, frigid Aridic Argiustolls or Mollisols. The focal system was of northern mixed-grass prairie vegetation near Miles City, Montana which is in eastern Montana, USA (soil collection area: 46.304583, -105.978050, elevation 849 m). The study consisted of two pot experiments including: 1) calcium carbonate addition and incubation experiment and 2) calcium carbonate addition and arbuscular mycorrhizal inoculant experiment. The experiments were designed to improve understanding effects of calcium carbonate on soil pH and available phosphorus (via. co-precipitation of calcium and phosphorus) in the absence of plants and mycorrhizal fungi (#1). The other experiment utilized eight plant species, calcium carbonate additions, and mycorrhizal inoculant to discern modes of phosphorus acquisition by plants (i.e. root P mining versus mycorrhizal collaboration; #2) over a soluble phosphorus gradient. Pot experiments utilized completely randomized designs. #1 was a single factor experiment with four calcium carbonate addition levels. #2 was a three factor experiment with eight plant species, four calcium carbonate levels, and a mycorrhizal inoculant treatment. Data include soil pH, soil nutrients, shoot phosphorus, shoot manganese, mycorrhizal responsiveness (i.e. Cohen's D), total plant biomass, shoot biomass, and root mass ratio.Additional details can be found in the readme file, manuscript, and manuscript's supplement.