cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/h6rcgfrwry.1
title: McAuliffe et al. (2021), JITC - Heterologous prime-boost vaccination targeting MAGE-type antigens promotes tumor T-cell infiltration and improves checkpoint blockade therapy

description: This dataset contains the raw data associated with and published in the following academic manuscript - McAuliffe et al. (2021), JITC: Heterologous prime-boost vaccination targeting MAGE-type antigens promotes tumor T-cell infiltration and improves checkpoint blockade therapy. 

Details on the research hypothesis of this project, descriptions of data acquired and notable findings and interpretation of the data have been described in full within the text of the published manuscript.

This dataset contains raw data for all of the figures contained within the manuscript (organized and broken down as such within this dataset). This is with the exception of the high-throughput sequencing data comprising Fig. 4H, Fig. 5,  Fig. S5 and Fig. S7 which has been uploaded to and made publicly available in the NCBI Gene Expression Omnibus (GEO) repository. GEO accession numbers to access these datasets have been included in the manuscript. 

Full descriptions of the data acquired for each figure / figure sub-part are provided in the text and figure legends of the manuscript, and information on how it was gathered and how to interpret it are contained in the materials & methods and results sections of the manuscript.
DOI: 10.5517/ccdc.csd.cc26l1zv
title: CCDC 2043147: Experimental Crystal Structure Determination

description: Related Article: Armando E. Castillo, Paulina Ceballos, Margarita Cerón, Enrique Pérez-Gutiérrez, Martha Sosa-Rivadeneyra, Wilson Bernal, Subbiah Thamotharan, Maxime A. Siegler, M. Judith Percino|2021|J.Mol.Struct.|1246|131269|doi:10.1016/j.molstruc.2021.131269
DOI: 10.5517/ccdc.csd.cc26wwhh
title: CCDC 2052587: Experimental Crystal Structure Determination

description: Related Article: Viacheslav A. Kuropatov, Anna V. Cherkasova, Konstantin A. Martyanov, Anton V. Cherkasov, Andrey G. Starikov, Vladimir K. Cherkasov|2021|Eur.J.Inorg.Chem.|2021|3292|doi:10.1002/ejic.202100517
DOI: 10.5517/ccdc.csd.cc26wwjj
title: CCDC 2052588: Experimental Crystal Structure Determination

description: Related Article: Viacheslav A. Kuropatov, Anna V. Cherkasova, Konstantin A. Martyanov, Anton V. Cherkasov, Andrey G. Starikov, Vladimir K. Cherkasov|2021|Eur.J.Inorg.Chem.|2021|3292|doi:10.1002/ejic.202100517
DOI: 10.5517/ccdc.csd.cc26wwkk
title: CCDC 2052589: Experimental Crystal Structure Determination

description: Related Article: Viacheslav A. Kuropatov, Anna V. Cherkasova, Konstantin A. Martyanov, Anton V. Cherkasov, Andrey G. Starikov, Vladimir K. Cherkasov|2021|Eur.J.Inorg.Chem.|2021|3292|doi:10.1002/ejic.202100517
DOI: 10.5517/ccdc.csd.cc274d60
title: CCDC 2059801: Experimental Crystal Structure Determination

description: Related Article: Junwei Wang, Lin Zhao, Caihong Li, Lei Zhao, Kun Zhao, Yang Hu, Lihong Hu|2021|Asian J.Org.Chem|10|2152|doi:10.1002/ajoc.202100296
DOI: 10.5517/ccdc.csd.cc275c71
title: CCDC 2060732: Experimental Crystal Structure Determination

description: Related Article: Zhao-Kun Yin, Zhao-Zhen Liu, Xiang Yuan, Zi-Ming Feng, Jian-Shuang Jiang, Xu Zhang, Pei-Cheng Zhang, Ya-Nan Yang|2021|Phytochemistry|191|112902|doi:10.1016/j.phytochem.2021.112902
DOI: 10.5517/ccdc.csd.cc26bq6h
title: CCDC 2036086: Experimental Crystal Structure Determination

description: Related Article: Lisa M. van Wyk, Leigh Loots, Leonard J. Barbour|2021|Chem.Commun.|57|7693|doi:10.1039/D1CC01717A
DOI: 10.5517/ccdc.csd.cc27fzl8
title: CCDC 2069020: Experimental Crystal Structure Determination

description: Related Article: Ming Bao, Xiongda Xie, Wenhao Hu, Xinfang Xu|2021|Adv.Synth.Catal.|363|4018|doi:10.1002/adsc.202100602
DOI: 10.5517/ccdc.csd.cc27g4b6
title: CCDC 2069167: Experimental Crystal Structure Determination

description: Related Article: Ming Bao, Xiongda Xie, Wenhao Hu, Xinfang Xu|2021|Adv.Synth.Catal.|363|4018|doi:10.1002/adsc.202100602
DOI: 10.5517/ccdc.csd.cc27g5rn
title: CCDC 2069211: Experimental Crystal Structure Determination

description: Related Article: Ming Bao, Xiongda Xie, Wenhao Hu, Xinfang Xu|2021|Adv.Synth.Catal.|363|4018|doi:10.1002/adsc.202100602
DOI: 10.5517/ccdc.csd.cc27j7qr
title: CCDC 2071194: Experimental Crystal Structure Determination

description: Related Article: Ricardo A. Peralta, Michael T. Huxley, Jorge Albalad, Christopher J. Sumby, Christian J. Doonan|2021|Inorg.Chem.|60|11775|doi:10.1021/acs.inorgchem.1c00849
DOI: 10.5517/ccdc.csd.cc27j7rs
title: CCDC 2071195: Experimental Crystal Structure Determination

description: Related Article: Ricardo A. Peralta, Michael T. Huxley, Jorge Albalad, Christopher J. Sumby, Christian J. Doonan|2021|Inorg.Chem.|60|11775|doi:10.1021/acs.inorgchem.1c00849
DOI: 10.6084/m9.figshare.16438434.v1
title: XDMF.350.xmf

description: File for visualization in Paraview of the 3D thermo-mechanical model of subduction for the Model CM at 20Myr. You can visualise the propriety of Density, Temperature and Viscosity.
DOI: 10.6084/m9.figshare.16438434
title: XDMF.350.xmf

description: File for visualization in Paraview of the 3D thermo-mechanical model of subduction for the Model CM at 20Myr. You can visualise the propriety of Density, Temperature and Viscosity.
DOI: 10.6084/m9.figshare.12839879.v3
title: Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

description: Single Cell Exome T1<br>Data List:https://figshare.com/articles/dataset/Single_Cell/14518056<br>
DOI: 10.6084/m9.figshare.12839879
title: Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

description: Single Cell Exome T1<br>Data List:https://figshare.com/articles/dataset/Single_Cell/14518056<br>
DOI: 10.6084/m9.figshare.12896729.v4
title: Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

description: Single Cell Exome T2<br>Data List:https://figshare.com/articles/dataset/Single_Cell/14518056<br>
DOI: 10.6084/m9.figshare.12896729
title: Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

description: Single Cell Exome T2<br>Data List:https://figshare.com/articles/dataset/Single_Cell/14518056<br>
DOI: 10.6084/m9.figshare.12966941.v1
title: TranscriptsT3

description: Single Cell Transcripts
DOI: 10.5066/p9smk908
title: Water-Quality Field Blank and Replicate Sample Data, Instantaneous and Mean Daily Discharge Data, and Dissolved-Solids Concentrations Data Collected in Four Waterways of Southwest Arizona, January 2017-March 2019

description: Water quality replicate sample data and field blank data was collected at the Colorado River above Imperial Dam, Colorado River below Cooper Wasteway, Yuma Main Drain, and 242 Lateral during 2017 and 2018. Instantaneous discharge data was collected at the Cooper Wasteway, Yuma Main Drain, and 242 Lateral from January 2017 to March 2019. Instantaneous discharge readings were recorded at a fixed interval of 5 minutes. Mean daily discharge data was collected at the Colorado River above Imperial Dam, Cooper Wasteway, Yuma Main Drain, and 242 Lateral from January 2017 to March 2019. Instantaneous discharge and mean daily discharge data was provided to the USGS by the International Boundary and Water Commission (IBWC). Discrete water-quality samples were collected at the Colorado River above Imperial Dam, Colorado River below Cooper Wasteway, Yuma Main Drain, and 242 Lateral during 2017, 2018, through March 2019 and values were used to compute dissolved solids concentrations using the United States Bureau of Reclamation's (BOR) method.
DOI: 10.6084/m9.figshare.13102517
title: Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

description: Single Cell Exome Bulk T1<br>Data List:https://figshare.com/articles/dataset/Single_Cell/14518056<br>
DOI: 10.6084/m9.figshare.13102517.v2
title: Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

description: Single Cell Exome Bulk T1<br>Data List:https://figshare.com/articles/dataset/Single_Cell/14518056<br>
DOI: 10.6084/m9.figshare.13102517.v1
title: ExomeBulkT1

description: Single Cell Exome
DOI: 10.6084/m9.figshare.13108865
title: Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

description: Single Cell Exome Bulk T2<br>Data List:https://figshare.com/articles/dataset/Single_Cell/14518056<br>
DOI: 10.6084/m9.figshare.13117628
title: Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

description: Single Cell Exome Bulk T3<br>Data List:https://figshare.com/articles/dataset/Single_Cell/14518056<br>
DOI: 10.6084/m9.figshare.15128706
title: Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

description: Single Cell Transcripts Bulk Normal 1<br>Data List:https://figshare.com/articles/dataset/Single_Cell/14518056<br>
DOI: 10.6084/m9.figshare.15128706.v1
title: TranscriptsBulkNormal1

description: Single Cell Transcripts
DOI: 10.12754/data-2021-0005
title: Assembled and annotated contigs from the metagenomic sequencing data generated from the redoxcline of the central western gyre of the Black Sea (UKR11/002)

description: The overarching goal of the cruise was to investigate the biology and biogeochemistry of the central Black Sea with special consideration of the processes at the pelagic redoxcline. Water samples were collected with free-flow niskin bottles connected to a CTD rosette. Samples for the assessment of the metatranscriptome were fixed in situ and ribosomal RNA was depleted before sequencing. Metagenome and -transcriptome reads were generated with Illumina HiSeq 2500. Community composition was derived from the V3-V4 fragment of the 16S rDNA and 16S rRNA gene sequence of the same sample. DNA and RNA were extracted using AllPrep DNA/RNA Kit from QIAGEN (Hilden, Germany). Samples for DNA sequencing where stored and samples for RNA sequencing were reverse transcribed with Multiscribe RT (Thermo Fisher Scientific, Waltham, MA, USA) after DNase treatment with TURBO-DNA-free Kit (Thermo Fisher Scientific, Waltham, MA, USA). Sequencing was done with SciLifeLab (Metagenome; Illumina HiSeq 2500; Stockholm, Schweden), Fasteris (Metatranscriptome, Illumina HiSeq 2500, Plain-Les-Ouates, Switzerland), LGC Genomics (Amplicon sequencing, Illumina MiSeq V3, Berlin, Germany). This data set includes the assembled contigs from the metagenomic data and their annotation.
DOI: 10.6084/m9.figshare.15128994
title: Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

description: Single Cell Transcripts Bulk Normal2<br>Data List:https://figshare.com/articles/dataset/Single_Cell/14518056<br>
DOI: 10.6084/m9.figshare.15128994.v1
title: TranscriptsBulkNormal2

description: Single Cell Transcripts
DOI: 10.6084/m9.figshare.15129228.v1
title: TranscriptsBulkT1

description: Single Cell Transcripts
DOI: 10.6084/m9.figshare.15129231.v1
title: TranscriptsBulkT2

description: Single Cell Transcripts
DOI: 10.6084/m9.figshare.15129234.v1
title: TranscriptsBulkT3

description: Single Cell Transcripts
DOI: 10.6084/m9.figshare.15129237.v2
title: Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

description: Single Cell Exome Bulk Normal<br>Data List:https://figshare.com/articles/dataset/Single_Cell/14518056<br>
DOI: 10.6084/m9.figshare.15129237
title: Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

description: Single Cell Exome Bulk Normal<br>Data List:https://figshare.com/articles/dataset/Single_Cell/14518056<br>
DOI: 10.6084/m9.figshare.15129237.v1
title: ExomeBulkNormal

description: Single Cell Exome
DOI: 10.6084/m9.figshare.15141222
title: Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

description: Single Cell Exom Bulk T0.5<br>Data List:https://figshare.com/articles/dataset/Single_Cell/14518056<br>
DOI: 10.6084/m9.figshare.15141222.v2
title: Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model

description: Single Cell Exom Bulk T0.5<br>Data List:https://figshare.com/articles/dataset/Single_Cell/14518056<br>
DOI: 10.6084/m9.figshare.15141222.v1
title: ExomeBulkT0.5_mouse-B6_10

description: Single Cell Exom
DOI: 10.6084/m9.figshare.16438467
title: Data.zip

description: Data needed for the analysis and figure preparation for manuscript "Paralog Knockout Profiling Reveals DUSP4/6 as a Digenic Dependence in MAPK-Pathway Driven Cancers".
DOI: 10.17632/j3nv4pfd8g.1
title: R&D worldwide

description: Country statistics on referred scientific publications, human and material resources devoted to R&D, and patents. Compiled for an efficiency assessment by country through Data Envelopment Analysis methodology.
DOI: 10.17632/8mfp39zz4b.1
title: Child5to16

description: Raw data from body composition analysis from 5 to 16 year of age: Child5to16.csv
Raw data of grip strength and gait speed for whole muscle prediction by multiple linear equation: WholeMuscle.csv
DOI: 10.17632/dk8gsx2r4j.6
title: French population exposure to Endocrine disruptors in and on plant foodstuffs

description: The folder "Tables" contains: 6 files to analyze an article sent,to Food Chemistry:  Endocrine disruptors on and in fruits and vegetables. Estimation of the potential exposure of the French population 

(1) French PPP-ED: is an Excel file that gathers, in Table 1, Plant Protection Products (PPP) authorised in France, their usage and applications (foodstuffs), as well as their endocrine disrupting effect if any. A tab contains all the references.

(2) French PPP usage-ED: is an Excel file with 4 tables gathering the Plant Protection Products (PPP) acting as Endocrine Disruptors (ED). The tables contain the total number of formulas used on 64 fruits and vegetables and the total number of formulas used for the same usage and application. The 4 tables are for Insecticides (with acaricides) (Table 2), fungicides (Table 3), herbicides (Table 4) and growth substances (Table 5).

(3) Exposure calculation-ED: is an Excel file containing Table 7. It gathers data on the 70 PPP acting as ED, on the 64 fruits and vegetables eaten in France. The table calculates of daily exposure to ED-PPP from the annual consumption of each foodstuff, the consumption per capita (French population fixed at 64 million citizens). The PPP doses are specific Maximum Residue Limits multiplied by a popularity factor taking into account the number of formulas containing the PPP of use to the total number of formulas used for the same application (same usage, same plant)

(4) Exposure summary-ED: is an Excel file containing Table 8. This table gathers the calculated exposure to each PPP acting as ED and sorted by their type of effect (estrogen Pro and Anti; Androgen: Pro and Anti; thyroid effect: Pro and Anti and "Others"). The sum for each effect is given.

(5) Phyto-Product-Enquiry-ED: is an Excel file (Table 6) gathering products recorded in different categories on French supermarket and specific websites (March 2020). For all products are the site of purchase, the URL in March 2020, the trademarks, the French names, and the ingredients. The last tab gives a summary of data with a graphic representation.

(6) Genistein + Daidzein values-ED: is an excel file (Table 9) gathering measurements of genistein + daidzein in 140 soy-based foodstuffs as well as the mean of the measurements for several categories identified for exposure calculations.

(7) Table for comparisons: is an excel file presenting in vitro + in vivo data on hormones and on natural and anthropogenic EDs. NOAEL + LOAEL generally obtained in rats, are given next to the putative exposure available

The folder "Figures" contains:

 Figure 1: Representation of the data sorting procedure for plant protection product (PPP) analysis. Data are from the European Union pesticide database. (https://ec.europa.eu/food/plant/pesticides/eu-pesticides-database/public/?event=homepage&language=EN accessed in March 2020)

Figure 2: Mean isoflavones content (genistein + daidzein) in different food categories found in French supermarket
DOI: 10.17632/k9wgmhxt48.1
title: Increased alpha-helicity of a supercharged coiled-coil protein increases siRNA delivery efficiency of protein-lipid hybrid vehicle (Processed Daat)

description: Processed Data
DOI: 10.17632/dnzz89v87n.1
title: Increased alpha-helicity of a supercharged coiled-coil protein increases siRNA delivery efficiency of protein-lipid hybrid vehicle (Raw Data) 

description: Raw data
DOI: 10.17632/kykbz4fypm.2
title: Groups of cemeteries in Gdansk, Krakow, Lublin, Warsaw and Wroclaw

description: Table listing groups of cemeteries in major Polish cities: Gdansk, Krakow, Lublin, Warsaw and Wroclaw with information on: the name of the cemetery, date of its establishment, date of its decommission, city of its location, group to which it belongs and additional information about its history.
DOI: 10.17632/ffbtwmcw37.1
title: Vegetation structure and species richness of the seasonally dry tropical forest

description: The data were collected in order to evaluate the different pathways through which the chronic disturbance determines the loss of species richness. 

The study was carried out in the seasonally dry tropical forest (SDTF) of southwestern Ecuador, specifically in Zapotillo County, Loja Province. 
Within an area of 12400 ha, we haphazardly located three grids of 4.2 x 2.2 km to have a reasonable variation of the forest diversity and heterogeneity in the region. Grids were separated at least 2.5 Km from each other and with a distance of 5 to 8 Km from Zapotillo town. Within each of these grids, we selected randomly 20 cells and located three transects of 50 x 2 m. In each transect, we registered all intercepted trees and shrubs with diameter at breast height (DBH) ≥ 1 cm and height > 1.30 m, and sub-shrubs with height ≥ 30 cm. Shrubs and sub-shrubs were only recorded in the central band of each transect, along 50 x 1 m. 
For each selected cell we defined a measure of anthropogenic disturbance based on the distance to populated centers, roads and farms. We adjusted a PCA with standardized values with all these variables and used the first component as a chronic disturbance intensity variable. We adjusted a PCA with standardized values with all these variables and used the first component as a chronic disturbance intensity variable. To characterize the forest structural complexity we used the square root index (SQRI) proposed by Barbeito et al. (2009). To calculate the plant productivity of each cell, we used the Normalized Differentiation of Vegetation Index (NDVI). The last variable was the density of large trees, considering all stems > 25 cm DBH in the three transects of each cell.
DOI: 10.17632/54cyc8nhx5.1
title: Pregnant University Students Project Data

description: Groups included: 1 - pregnant university students, 2 - non-pregnant female students, 3 - male students, 4 - pregnant non-students
DOI: 10.17632/8nv274mp7s.1
title: Sentiment Analysis of 10-K Files published at the "Open Code Community"

description: Material published at "https://opencodecom.net/post/2021-08-18-sentiment-analysis-of-10-k-files/"
DOI: 10.17632/84yybmrtxx.2
title: Targeting riboswitches with synthetic small RNAs for metabolic engineering

description: Raw data supporting the work "Targeting riboswitches with synthetic small RNAs for metabolic engineering". The data demonstrate the design and implementation of a new small RNA tool to target bacterial riboswitches. The synthetic sRNA activates gene expression at the transcription level by counteracting the riboswitch's control. The riboswitch-targeting sRNA is suitable for use in cell-free and cellular systems and can be combined into arrays for multiplex riboswitch-targeting.
DOI: 10.17632/ncxvdbmn82.1
title: Audience Effects In Anonymous Pro-Social Followership

description: This dataset corresponds to the experiment described in Fernández Duque, Mauricio and Hiscox, M., 2021. Audience Effects In Pro-Social Followership, mimeo. Harvard University. The paper is available at scholar.harvard.edu/duque/research. The variables are the ones included in the analysis, and their labels correspond to the variable names used in the tables of the paper.
DOI: 10.17632/p3zx9x37fk.1
title: Disparities in non-melanoma skin cancer in Hispanic/Latino patients based on Mohs micrographic surgery defect size, a multicenter retrospective study.

description: Figure 2: Descriptive boxplots of the relationship between Mohs micrographic surgery (MMS) defect sizes and other predictor variables including race/ethnicity, carcinoma type, age, and gender. Medians are reflected as horizontal lines, whereas the bars represent 1.5 interquartile ranges. MMS defect size is plotted using log scale.
DOI: 10.17632/gyx3hd8rkv.1
title: Student Teachers' Reasons of Technology Integration

description: This dataset contains coding analysis and other related documents.
DOI: 10.17632/5kzgcdf2kv.1
title: Empirical estimation of marine phytoplankton assemblages in coastal and offshore areas using an in situ multi-wavelength excitation fluorometer

description: This is the data set and R program for empirical estimation of marine phytoplankton assemblages using an in situ multi-wavelength excitation fluorometer.  We used multi-exciter (JFE-advantech, Japan).  The explanation of the R program was in the programing source.   You can play demo by this data set and programs.
DOI: 10.17632/5k989kb8t7.1
title: Elicitation of broadly protective sarbecovirus immunity by receptor-binding domain nanoparticle vaccines, Walls et al.

description: Understanding vaccine-elicited protection against SARS-CoV-2 variants and other sarbecoviruses is key for guiding public health policies. We show that a clinical stage multivalent SARS-CoV-2 spike receptor-binding domain nanoparticle vaccine (RBD-NP) protects mice from SARS-CoV-2 challenge after a single immunization, indicating a potential dose-sparing strategy. We benchmarked serum neutralizing activity elicited by RBD-NP in non-human primates against a lead prefusion-stabilized SARS-CoV-2 spike (HexaPro) using a panel of circulating mutants. Polyclonal antibodies elicited by both vaccines are similarly resilient to many RBD residue substitutions tested although mutations at and surrounding position 484 have negative consequences for neutralization. Mosaic and cocktail nanoparticle immunogens displaying multiple sarbecovirus RBDs elicit broad neutralizing activity in mice and protect mice against SARS-CoV challenge even in the absence of SARS-CoV RBD in the vaccine. This study provides proof of principle that multivalent sarbecovirus RBD-NPs induce heterotypic protection and motivates advancing such broadly protective sarbecovirus vaccines to the clinic.
DOI: 10.17632/fxfvtgsn66.1
title: NUMBER OF STAGES AND THERMAL PRETREATMENT EFFECTS ON BIOGAS PRODUCTION FROM LIGNOCELLULOSIC MATERIALS

description: Data of the biogas production and methane content