cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1541128
title: Relationship between height and gender in members of the York University community

description: This study was conducted to examine the correlation between gender and height. Data was collected by surveying 20 individuals on the York University campus. Individuals self-reported their height and gender. Data was collected on September 14, 2015 at approximately 3:00pm.
DOI: 10.6084/m9.figshare.1541130.v1
title: Age vs. Height (cm) of BIOL2050 students in Laboratory 1

description: In collaborative groups of 4, height in centimetres was collected along with age for each student in Laboratory 1 (Section 1) (20 students in total) Height was approximated in feet and converted into centimetres therefore measurements are inaccurate. Data was collected during laboratory time which occurs during 2:30-5:30pm.
DOI: 10.6084/m9.figshare.1541133.v1
title: The height and age of fellow classmates

description: The age and height of each classmate collected in lab 1 of ecology, monday 2:30 to 5:30. There were 20 subjects with the units of height measured in centimetres and the unit of age measured in years. Coauthors Dylan Cairns, Felicia Oyedepo and Richer Lai.
DOI: 10.6084/m9.figshare.1541126
title: Introductory Lab

description: The measurement of all variables was provided by the participants of the study. All three variables were obtained inaccurately due to lack of time and tools. Replications of this study should only include students, and shoe size should be rounded up so as not to include half sizes.
DOI: 10.6084/m9.figshare.1541127
title: Introductory Ecology Lab, Biol 2050

description: This set includes the data of gender and eye colour of 20 people in the introductory ecology lab. This lab was completed on September 14th, 2015. The data was collected by interviewing the members of the laboratory. This was completed for the purpose of getting familiar with the concepts of collecting data and creating meta-data. Lab partners were Abera, Alex, and Sufyan.
DOI: 10.6084/m9.figshare.1541128.v1
title: Relationship between height and gender in members of the York University community

description: This study was conducted to examine the correlation between gender and height. Data was collected by surveying 20 individuals on the York University campus. Individuals self-reported their height and gender. Data was collected on September 14, 2015 at approximately 3:00pm.
DOI: 10.6084/m9.figshare.1541140.v5
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1541126.v1
title: Introductory Lab

description: The measurement of all variables was provided by the participants of the study. All three variables were obtained inaccurately due to lack of time and tools. Replications of this study should only include students, and shoe size should be rounded up so as not to include half sizes.
DOI: 10.6084/m9.figshare.1541127.v1
title: Introductory Ecology Lab, Biol 2050

description: This set includes the data of gender and eye colour of 20 people in the introductory ecology lab. This lab was completed on September 14th, 2015. The data was collected by interviewing the members of the laboratory. This was completed for the purpose of getting familiar with the concepts of collecting data and creating meta-data. Lab partners were Abera, Alex, and Sufyan.
DOI: 10.6084/m9.figshare.1541124
title: Data Set on Survey of Hair and Eye Colour (Practice)

description: A data sheet containing information on a survey taken on September 14,2015 where subjects were asked on their hair and eye colour.
DOI: 10.6084/m9.figshare.1541129.v1
title: Gender and Eye Colour of Twenty Individuals

description: The gender and eye colour of a sample size of twenty participants was collected on September 14, 2015, between 2:30 PM and 5:30 PM at York University. Partners in data collecting included Abera, Elaine, and Sufyan. Data was collected by asking twenty participants what their gender was (either male or female), and their eye colour (categorized into five sections explained in the meta-data). The primary goal of data collection was for educational purposes.
DOI: 10.6084/m9.figshare.1541140.v6
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1541124.v1
title: Data Set on Survey of Hair and Eye Colour (Practice)

description: A data sheet containing information on a survey taken on September 14,2015 where subjects were asked on their hair and eye colour.
DOI: 10.6084/m9.figshare.1541140.v7
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1541106
title: Denitrification measurements in various plant communities

description: Data table of denitrification measurements included in the meta-analysis, "Effects of wetland plants on denitrification rates." All denitrification measurements were converted to the same units (g N m-2 h-1). Measurements are categorized by the dominant species in the plant community; the genus, family, and growth form of the dominant species and whether it is a monocot or dicot; the type of wetland system in which the study was conducted; and the method used to measure denitrification rates. The effect size of vegetation on denitrification rates and variance in effect size are reported in columns “lnR” and “Var(lnR),” respectively.
DOI: 10.6084/m9.figshare.1541140.v8
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1541102
title: Luchtafweer, folder

description: Collectie Nivard
DOI: 10.6084/m9.figshare.1541104
title: Luchtafweer, folder

description: Collectie Nivard
DOI: 10.6084/m9.figshare.1541105
title: Luchtafweer, folder

description: Collectie Nivard
DOI: 10.6084/m9.figshare.1541103
title: Luchtafweer, folder

description: Collectie Nivard
DOI: 10.6084/m9.figshare.1541102.v1
title: Luchtafweer, folder

description: Collectie Nivard
DOI: 10.6084/m9.figshare.1541140.v9
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1541099
title: Luchtafweer, folder

description: Collectie Nivard
DOI: 10.6084/m9.figshare.1541101
title: Luchtafweer, folder

description: Collectie Nivard
DOI: 10.6084/m9.figshare.1541105.v2
title: Luchtafweer, folder

description: Collectie Nivard
DOI: 10.6084/m9.figshare.1541100
title: Luchtafweer, folder

description: Collectie Nivard
DOI: 10.6084/m9.figshare.1541105.v1
title: IMG_20150914_0004_NEW.jpg

description: Collectie Nivard
DOI: 10.6084/m9.figshare.1541101.v1
title: Luchtafweer, folder

description: Collectie Nivard
DOI: 10.6084/m9.figshare.1541140.v10
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1541099.v1
title: Luchtafweer, folder

description: Collectie Nivard
DOI: 10.6084/m9.figshare.1541098
title: Luchtafweer, folder

description: Collectie Nivard
DOI: 10.6084/m9.figshare.1541060
title: 5C Test dataset and script for HiFive

description: Mouse ESC 5C data produced with HindIII, chromosome X from GSE35721, a bed file containing probed RE fragments, and a shell script with commands for a complete 5C analysis from loading fragment read counts to producing a normalized heatmap using HiFive.
DOI: 10.6084/m9.figshare.1541098.v1
title: Luchtafweer, folder

description: Collectie Nivard
DOI: 10.6084/m9.figshare.1541100.v1
title: Luchtafweer, folder

description: Collectie Nivard
DOI: 10.6084/m9.figshare.1541140.v11
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1541060.v2
title: 5C Test dataset and script for HiFive

description: Mouse ESC 5C data produced with HindIII, chromosome X from GSE35721, a bed file containing probed RE fragments, and a shell script with commands for a complete 5C analysis from loading fragment read counts to producing a normalized heatmap using HiFive.
DOI: 10.6084/m9.figshare.1541140.v12
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1541060.v1
title: 5C Test data

description: Mouse ESC 5C data produced with HindIII, chromosome X from GSE35721, a bed file containing probed RE fragments, and a shell script with commands for a complete 5C analysis from loading fragment read counts to producing a normalized heatmap using HiFive.
DOI: 10.6084/m9.figshare.1540897
title: LSE RCUK APCs 2014-15

description: This spreadsheet contains details of article processing charges (APCs) paid by the London School of Economics out of RCUK funds from July 2014 to June 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/).
DOI: 10.6084/m9.figshare.1541140.v13
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.26030/knbs-6j16
title: DNA copy number analysis from mice with radiation-induced acute myeloid leukemia

description: Certain mouse strains such as CBA, C3H and RFM, have high incidence of radiation-induced acute myeloid leukemia (AML). The data in this series wer generated by using spleen DNA from CBA mice which were irraidated with either gamma-rays or heavy ion (HZE) particles. Spleen DNA with radiation-induced AML was compared with DNA from normal CBA mice. Comparison of spleen DNA from CBA mice with radiation-induced AML vs genomic DNA from normal CBA mice
DOI: 10.6084/m9.figshare.1540859
title: Data from: Different proteomic strategies to identify genuine SUMO targets and their modification sites in Trypanosoma brucei procyclic forms

description: SUMOylation is an important post-translational modification conserved in eukaryotic organisms. In <em>Trypanosoma brucei</em>, SUMO is essential in procyclic and bloodstream forms. Furthermore, SUMO has been linked to the antigenic variation process, as a highly SUMOylated focus was recently identified within chromatin-associated proteins of the active VSG expression site. We aimed to establish a reliable strategy to identify SUMO conjugates in <em>T. brucei</em>. We expressed various tagged variants of SUMO from the endogenous locus. His-HA-<em>Tb</em>SUMO was useful to validate the tag functionality but SUMO conjugates were not enriched enough over contaminants after affinity purification. A Lys-deficient SUMO version, created to reduce contaminants by Lys-C digestion, was able to overcome this issue but did not allow mapping many SUMOylation sites. This cell line was in turn useful to demonstrate that polySUMO chains are not essential for parasite viability. Finally, a His-HA-<em>Tb</em>SUMOT106K version allowed the purification of SUMO conjugates and, after digestion with Lys-C, the enrichment for diGly-Lys peptides using specific antibodies. This site specific proteomic strategy led us to identify 45 SUMOylated proteins and 53 acceptor sites unambiguously. SUMOylated proteins belong mainly to nuclear processes such as DNA replication and repair, transcription, rRNA biogenesis, and chromatin remodelling, among others.
DOI: 10.6084/m9.figshare.1540897.v1
title: LSE RCUK APCs 2014-15

description: This spreadsheet contains details of article processing charges (APCs) paid by the London School of Economics out of RCUK funds from July 2014 to June 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/).
DOI: 10.6084/m9.figshare.1540857
title: Dataset for manuscript titled "Amyloid-related memory decline in preclinical Alzheimer’s disease is dependent on APOE ε4 and is detectable over 18-months" published in PLOS One

description: Data containing demographic, biomarker and cognitive data in a subgroup of cognitively normal older adults who underwet PET neuroimaging for amyloid, and who had completed 18 month assessments of a brief computerized cognitive battery as part of the Australian Imaging, Biomarkers and Lifestyle (AIBL) Study.
DOI: 10.6084/m9.figshare.1540857.v1
title: Dataset for manuscript titled "Amyloid-related memory decline in preclinical Alzheimer’s disease is dependent on APOE ε4 and is detectable over 18-months" published in PLOS One

description: Data containing demographic, biomarker and cognitive data in a subgroup of cognitively normal older adults who underwet PET neuroimaging for amyloid, and who had completed 18 month assessments of a brief computerized cognitive battery as part of the Australian Imaging, Biomarkers and Lifestyle (AIBL) Study.
DOI: 10.6084/m9.figshare.1540853
title: Data from: Chromatin bound bacterial effector AnkA recruits HDAC1 and modifies host gene expression

description: Control of host epigenetics is becoming evident as a mechanism by which symbionts and pathogens survive. <em>Anaplasma phagocytophilum</em>, an obligate intracellular bacterium, downregulates multiple host defense genes where histone deacetylase 1 (HDAC1) binds and histone 3 is deacetylated at their promoters, including the NADPH oxidase component, <em>CYBB</em>. How HDAC1 is targeted to defense gene promoters is unknown. Ankyrin A (AnkA), an <em>A. phagocytophilum</em> T4SS effector, enters the granulocyte nucleus, binds stretches of AT-rich DNA and alters transcription of antimicrobial defense genes, including downregulation of <em>CYBB</em>. Here we found AnkA binds to a predicted matrix attachment region in the proximal <em>CYBB</em> promoter. Using the <em>CYBB</em> promoter as a model of <em>cis</em>-gene silencing, we interrogated the mechanism of AnkA-mediated <em>CYBB</em> repression. The N-terminus of AnkA was critical for nuclear localization, the central ANK repeats and C-terminus were important for DNA binding, and most promoter activity localized to the central ANK repeats. Furthermore, a direct interaction between AnkA and HDAC1 was detected at the <em>CYBB</em> promoter, and was critical for AnkA-mediated <em>CYBB</em> repression. This novel microbial manipulation of host chromatin and gene expression provides important evidence of the direct effects that prokaryotic nuclear effectors can exert over host transcription and function.
DOI: 10.6084/m9.figshare.1541140.v14
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1540818
title: CRAVE data_Study 1_exploratory factor analysis

description: Study 1 data
DOI: 10.6084/m9.figshare.1540818.v1
title: CRAVE data_Study 1_exploratory factor analysis

description: Study 1 data
DOI: 10.6084/m9.figshare.1540859.v2
title: Data from: Different proteomic strategies to identify genuine SUMO targets and their modification sites in Trypanosoma brucei procyclic forms

description: SUMOylation is an important post-translational modification conserved in eukaryotic organisms. In <em>Trypanosoma brucei</em>, SUMO is essential in procyclic and bloodstream forms. Furthermore, SUMO has been linked to the antigenic variation process, as a highly SUMOylated focus was recently identified within chromatin-associated proteins of the active VSG expression site. We aimed to establish a reliable strategy to identify SUMO conjugates in <em>T. brucei</em>. We expressed various tagged variants of SUMO from the endogenous locus. His-HA-<em>Tb</em>SUMO was useful to validate the tag functionality but SUMO conjugates were not enriched enough over contaminants after affinity purification. A Lys-deficient SUMO version, created to reduce contaminants by Lys-C digestion, was able to overcome this issue but did not allow mapping many SUMOylation sites. This cell line was in turn useful to demonstrate that polySUMO chains are not essential for parasite viability. Finally, a His-HA-<em>Tb</em>SUMOT106K version allowed the purification of SUMO conjugates and, after digestion with Lys-C, the enrichment for diGly-Lys peptides using specific antibodies. This site specific proteomic strategy led us to identify 45 SUMOylated proteins and 53 acceptor sites unambiguously. SUMOylated proteins belong mainly to nuclear processes such as DNA replication and repair, transcription, rRNA biogenesis, and chromatin remodelling, among others.
DOI: 10.6084/m9.figshare.1540817
title: CRAVE data_Study 2_Confirmatory factor analysis

description: Study 2 data for CRAVE. Confirmatory factor analysis.
DOI: 10.6084/m9.figshare.1541140.v15
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1540853.v1
title: Chromatin bound bacterial effector AnkA recruits HDAC1 and modifies host gene expression

description: Control of host epigenetics is becoming evident as a mechanism by which symbionts and pathogens survive. <em>Anaplasma phagocytophilum</em>, an obligate intracellular bacterium, downregulates multiple host defense genes where histone deacetylase 1 (HDAC1) binds and histone 3 is deacetylated at their promoters, including the NADPH oxidase component, <em>CYBB</em>. How HDAC1 is targeted to defense gene promoters is unknown. Ankyrin A (AnkA), an <em>A. phagocytophilum</em> T4SS effector, enters the granulocyte nucleus, binds stretches of AT-rich DNA and alters transcription of antimicrobial defense genes, including downregulation of <em>CYBB</em>. Here we found AnkA binds to a predicted matrix attachment region in the proximal <em>CYBB</em> promoter. Using the <em>CYBB</em> promoter as a model of <em>cis</em>-gene silencing, we interrogated the mechanism of AnkA-mediated <em>CYBB</em> repression. The N-terminus of AnkA was critical for nuclear localization, the central ANK repeats and C-terminus were important for DNA binding, and most promoter activity localized to the central ANK repeats. Furthermore, a direct interaction between AnkA and HDAC1 was detected at the <em>CYBB</em> promoter, and was critical for AnkA-mediated <em>CYBB</em> repression. This novel microbial manipulation of host chromatin and gene expression provides important evidence of the direct effects that prokaryotic nuclear effectors can exert over host transcription and function.
DOI: 10.6084/m9.figshare.1540859.v1
title: Different proteomic strategies to identify genuine SUMO targets and their modification sites in Trypanosoma brucei procyclic forms

description: SUMOylation is an important post-translational modification conserved in eukaryotic organisms. In <em>Trypanosoma brucei</em>, SUMO is essential in procyclic and bloodstream forms. Furthermore, SUMO has been linked to the antigenic variation process, as a highly SUMOylated focus was recently identified within chromatin-associated proteins of the active VSG expression site. We aimed to establish a reliable strategy to identify SUMO conjugates in <em>T. brucei</em>. We expressed various tagged variants of SUMO from the endogenous locus. His-HA-<em>Tb</em>SUMO was useful to validate the tag functionality but SUMO conjugates were not enriched enough over contaminants after affinity purification. A Lys-deficient SUMO version, created to reduce contaminants by Lys-C digestion, was able to overcome this issue but did not allow mapping many SUMOylation sites. This cell line was in turn useful to demonstrate that polySUMO chains are not essential for parasite viability. Finally, a His-HA-<em>Tb</em>SUMOT106K version allowed the purification of SUMO conjugates and, after digestion with Lys-C, the enrichment for diGly-Lys peptides using specific antibodies. This site specific proteomic strategy led us to identify 45 SUMOylated proteins and 53 acceptor sites unambiguously. SUMOylated proteins belong mainly to nuclear processes such as DNA replication and repair, transcription, rRNA biogenesis, and chromatin remodelling, among others.
DOI: 10.6084/m9.figshare.1540817.v1
title: CRAVE data_Study 2_Confirmatory factor analysis

description: Study 2 data for CRAVE. Confirmatory factor analysis.
DOI: 10.6084/m9.figshare.1540796
title: Example of use of DEO #1

description: Tagging paper blocks with rhetoric entities.
DOI: 10.6084/m9.figshare.1540814.v1
title: P3

description: Game: Fallen Apple
DOI: 10.6084/m9.figshare.1541140.v16
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1541140.v17
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1541140.v18
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1541140.v19
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1541140.v20
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1541140.v21
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1541140.v22
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1541140.v23
title: Supporting info for DOI:10.1002/ejoc.201300337 (DFT-D3 dispersion corrections)

description: Inputs and outputs for the computation of dispersion effects on the intermediates involved in BBr3-catalyzed ether cleavage
DOI: 10.6084/m9.figshare.1541140.v25
title: Supporting info for "BBr3-Assisted Cleavage of Most Ethers Does Not Follow the Commonly Assumed Mechanism" DOI:10.1002/ejoc.201300337

description: Inputs and outputs for the computation of optimized geometries, solutionenergies, zero-point and vibrational energies, and dispersion energies of the intermediates involved in BBr3-catalyzed ether cleavage