cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9894992
title: Additional file 1: of Best-worst scaling improves measurement of first impressions

description: R scripts used to generate the design and sort and score the data of Study 3, with annotation: intended as a template to build future BWS studies. (ZIP 15 kb)
DOI: 10.6084/m9.figshare.9894992.v1
title: Additional file 1: of Best-worst scaling improves measurement of first impressions

description: R scripts used to generate the design and sort and score the data of Study 3, with annotation: intended as a template to build future BWS studies. (ZIP 15 kb)
DOI: 10.6084/m9.figshare.9894938
title: Additional file 8: of Umbilical cord as a long-term source of activatable mesenchymal stromal cells for immunomodulation

description: Annotation and raw data from the secretome analysis. Contains the annotation of individual wells. Date: sample collection date. Medium: “I” = IFN-γ, “T” = TNF-α, 1 = 1 ng/mL, 5 = 5 ng/mL, 25 = 25 ng/mL. Count.B: Cells counted before seeding in Neubauer chamber. Squares.B: Number of squares counted before seeding. Volume.B: Solution volume of the cells for counting before seeding. Days: Conditioning time of the medium. Count.A: Cells counted after conditioning in Neubauer chamber. Squares.A: Number of squares counted after conditioning. Volume.A: Solution volume of the cells for counting after conditioning. Medium: Volume of the conditioned medium. Contains the raw data. All values are in pg/mL. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.9894932
title: Additional file 7: of Umbilical cord as a long-term source of activatable mesenchymal stromal cells for immunomodulation

description: Table S6. Contains a list of diseases and functions from an IPA analysis regarding significantly deregulated genes from AdditionalÂ fileÂ 3: Table S2. (IPA). (XLSX 15 kb)
DOI: 10.6084/m9.figshare.9894938.v1
title: Additional file 8: of Umbilical cord as a long-term source of activatable mesenchymal stromal cells for immunomodulation

description: Annotation and raw data from the secretome analysis. Contains the annotation of individual wells. Date: sample collection date. Medium: “I” = IFN-γ, “T” = TNF-α, 1 = 1 ng/mL, 5 = 5 ng/mL, 25 = 25 ng/mL. Count.B: Cells counted before seeding in Neubauer chamber. Squares.B: Number of squares counted before seeding. Volume.B: Solution volume of the cells for counting before seeding. Days: Conditioning time of the medium. Count.A: Cells counted after conditioning in Neubauer chamber. Squares.A: Number of squares counted after conditioning. Volume.A: Solution volume of the cells for counting after conditioning. Medium: Volume of the conditioned medium. Contains the raw data. All values are in pg/mL. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.9894932.v1
title: Additional file 7: of Umbilical cord as a long-term source of activatable mesenchymal stromal cells for immunomodulation

description: Table S6. Contains a list of diseases and functions from an IPA analysis regarding significantly deregulated genes from AdditionalÂ fileÂ 3: Table S2. (IPA). (XLSX 15 kb)
DOI: 10.6084/m9.figshare.9894923
title: Additional file 6: of Umbilical cord as a long-term source of activatable mesenchymal stromal cells for immunomodulation

description: Table S5. Contains a list of canonical pathways from an IPA analysis of the significantly deregulated genes from AdditionalÂ fileÂ 3: Table S2. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.9894917
title: Additional file 5: of Umbilical cord as a long-term source of activatable mesenchymal stromal cells for immunomodulation

description: Table S4. Contains a list of only significantly deregulated genes regarding MHC molecules from the IPA analysis. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.9894923.v1
title: Additional file 6: of Umbilical cord as a long-term source of activatable mesenchymal stromal cells for immunomodulation

description: Table S5. Contains a list of canonical pathways from an IPA analysis of the significantly deregulated genes from AdditionalÂ fileÂ 3: Table S2. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.9894908
title: Additional file 4: of Umbilical cord as a long-term source of activatable mesenchymal stromal cells for immunomodulation

description: Table S3. Contains a list of upstream regulators from Ingenuity Pathway Analysis (IPA) of the significantly deregulated genes from Additional fileÂ 3: Table S2. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.9894917.v1
title: Additional file 5: of Umbilical cord as a long-term source of activatable mesenchymal stromal cells for immunomodulation

description: Table S4. Contains a list of only significantly deregulated genes regarding MHC molecules from the IPA analysis. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.9894908.v1
title: Additional file 4: of Umbilical cord as a long-term source of activatable mesenchymal stromal cells for immunomodulation

description: Table S3. Contains a list of upstream regulators from Ingenuity Pathway Analysis (IPA) of the significantly deregulated genes from Additional fileÂ 3: Table S2. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.9894899
title: Additional file 3: of Umbilical cord as a long-term source of activatable mesenchymal stromal cells for immunomodulation

description: Table S2. Transcriptome analysis of significantly deregulated genes between naïve and activated MSC-EM. Contains a list of significantly deregulated genes between naïve and activated MSC-EM. P values were adjusted with Bonferroni-Holm method and only genes with a p value below 0.05 are listed. logFC = Mean of activated minus mean of naïve MSC-EM expression. (XLSX 274 kb)
DOI: 10.6084/m9.figshare.9894893
title: Additional file 2: of Umbilical cord as a long-term source of activatable mesenchymal stromal cells for immunomodulation

description: Table S1. Significantly deregulated genes between early and late induced MSC-EMs. Contains a list of significantly deregulated genes between early and late induced MSC-EMs. P values were adjusted with Bonferroni-Holm method and only genes with a p value below 0.05 are listed. logFCâ =â Mean of early minus mean of late induced expression. (XLSX 315 kb)
DOI: 10.6084/m9.figshare.9894899.v1
title: Additional file 3: of Umbilical cord as a long-term source of activatable mesenchymal stromal cells for immunomodulation

description: Table S2. Transcriptome analysis of significantly deregulated genes between naïve and activated MSC-EM. Contains a list of significantly deregulated genes between naïve and activated MSC-EM. P values were adjusted with Bonferroni-Holm method and only genes with a p value below 0.05 are listed. logFC = Mean of activated minus mean of naïve MSC-EM expression. (XLSX 274 kb)
DOI: 10.6084/m9.figshare.9894893.v1
title: Additional file 2: of Umbilical cord as a long-term source of activatable mesenchymal stromal cells for immunomodulation

description: Table S1. Significantly deregulated genes between early and late induced MSC-EMs. Contains a list of significantly deregulated genes between early and late induced MSC-EMs. P values were adjusted with Bonferroni-Holm method and only genes with a p value below 0.05 are listed. logFCâ =â Mean of early minus mean of late induced expression. (XLSX 315 kb)
DOI: 10.6084/m9.figshare.9894845
title: MOESM8 of Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

description: Additional file 8: Table S7. Transcriptomic raw data (libraries names and raw counts in each library).
DOI: 10.6084/m9.figshare.9894845.v1
title: MOESM8 of Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

description: Additional file 8: Table S7. Transcriptomic raw data (libraries names and raw counts in each library).
DOI: 10.6084/m9.figshare.9894824
title: MOESM5 of Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

description: Additional file 5: Table S4. Number of CAZymes across all genomes evaluated in this study.
DOI: 10.6084/m9.figshare.9894830
title: MOESM6 of Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

description: Additional file 6: Table S5. Expression values of AA11 and AA13 genes from Coniochaeta sp. 2T2.1 after growth (0.1 OD, 600Â nm) on wheat straw (WS) and dilute-acid-pretreated wheat straw solids (PTWS).
DOI: 10.6084/m9.figshare.9894815
title: MOESM4 of Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

description: Additional file 4: Table S3. Unique CAZymes found in Coniochaeta sp. 2T2.1 after comparison with other Lecythophora/Coniochaeta genomes (NRRL3016, CBS111746, PMI546 and AK0013) and Trichoderma reseei genome (Trire2).
DOI: 10.6084/m9.figshare.9894824.v1
title: MOESM5 of Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

description: Additional file 5: Table S4. Number of CAZymes across all genomes evaluated in this study.
DOI: 10.6084/m9.figshare.9894830.v1
title: MOESM6 of Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

description: Additional file 6: Table S5. Expression values of AA11 and AA13 genes from Coniochaeta sp. 2T2.1 after growth (0.1 OD, 600Â nm) on wheat straw (WS) and dilute-acid-pretreated wheat straw solids (PTWS).
DOI: 10.6084/m9.figshare.9894815.v1
title: MOESM4 of Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

description: Additional file 4: Table S3. Unique CAZymes found in Coniochaeta sp. 2T2.1 after comparison with other Lecythophora/Coniochaeta genomes (NRRL3016, CBS111746, PMI546 and AK0013) and Trichoderma reseei genome (Trire2).
DOI: 10.6084/m9.figshare.9894797
title: data for Figure 5D-F, caudal-most section

description: processed quantified RNAscope data for image set 042317_Htr7_Tac1_Th_B5614_S05_MIP_stitched
DOI: 10.6084/m9.figshare.9894800
title: MOESM2 of Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

description: Additional file 2: Table S2. List of all proteins found in the 2T2.1 genome and their duplication status.
DOI: 10.6084/m9.figshare.9894797.v1
title: data for Figure 5D-F, caudal-most section

description: processed quantified RNAscope data for image set 042317_Htr7_Tac1_Th_B5614_S05_MIP_stitched
DOI: 10.6084/m9.figshare.9894800.v1
title: MOESM2 of Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

description: Additional file 2: Table S2. List of all proteins found in the 2T2.1 genome and their duplication status.
DOI: 10.6084/m9.figshare.9894788
title: MOESM1 of Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

description: Additional file 1: Table S1. Assembly and annotation statistics from fungal genomes used in this study.
DOI: 10.6084/m9.figshare.9894788.v1
title: MOESM1 of Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

description: Additional file 1: Table S1. Assembly and annotation statistics from fungal genomes used in this study.
DOI: 10.6084/m9.figshare.9894668
title: Additional file 1: of Enhancement of therapeutic potential of mesenchymal stem cell-derived extracellular vesicles

description: Table S1 Overview of MSC-EVs studies. There are total 126 published articles that address the therapeutic function of EVs in a variety of disease models. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.9894668.v1
title: Additional file 1: of Enhancement of therapeutic potential of mesenchymal stem cell-derived extracellular vesicles

description: Table S1 Overview of MSC-EVs studies. There are total 126 published articles that address the therapeutic function of EVs in a variety of disease models. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.9894650
title: MOESM1 of Knowledge, perceptions and practices regarding schistosomiasis among women living in a highly endemic rural district in Zimbabwe: implications on infections among preschool-aged children

description: Additional file 1: Table S1. Association of knowledge, perceptions, and practices of the women regarding schistosomiasis with their community of residence.
DOI: 10.6084/m9.figshare.9894650.v1
title: MOESM1 of Knowledge, perceptions and practices regarding schistosomiasis among women living in a highly endemic rural district in Zimbabwe: implications on infections among preschool-aged children

description: Additional file 1: Table S1. Association of knowledge, perceptions, and practices of the women regarding schistosomiasis with their community of residence.
DOI: 10.6084/m9.figshare.9894611
title: MOESM3 of The impact of genomic selection on genetic diversity and genetic gain in three French dairy cattle breeds

description: Additional file 3: Table S3. Parental generation intervals. Mean parental generation intervals for bulls born between 2005 and for bulls born between 2010 and 2015 in months and in years, for Montbéliarde, Normande and Holstein.
DOI: 10.6084/m9.figshare.9894605
title: MOESM2 of The impact of genomic selection on genetic diversity and genetic gain in three French dairy cattle breeds

description: Additional file 2: Table S2. Length of the autosomal genome in three French dairy cattle breeds. Length of autosomal genome on which ROH can be detected corresponds to the length of the autosomal genome covered by SNPs after withholding gaps longer than 150 kb between two SNPs. The proportion of autosomal genome on which ROH can be detected is the length of autosomal genome on which ROH can be detected divided by the total length of the autosomal genome (from Bos taurus assembly 3.1.1).
DOI: 10.6084/m9.figshare.9894611.v1
title: MOESM3 of The impact of genomic selection on genetic diversity and genetic gain in three French dairy cattle breeds

description: Additional file 3: Table S3. Parental generation intervals. Mean parental generation intervals for bulls born between 2005 and for bulls born between 2010 and 2015 in months and in years, for Montbéliarde, Normande and Holstein.
DOI: 10.6084/m9.figshare.9894605.v1
title: MOESM2 of The impact of genomic selection on genetic diversity and genetic gain in three French dairy cattle breeds

description: Additional file 2: Table S2. Length of the autosomal genome in three French dairy cattle breeds. Length of autosomal genome on which ROH can be detected corresponds to the length of the autosomal genome covered by SNPs after withholding gaps longer than 150 kb between two SNPs. The proportion of autosomal genome on which ROH can be detected is the length of autosomal genome on which ROH can be detected divided by the total length of the autosomal genome (from Bos taurus assembly 3.1.1).
DOI: 10.6084/m9.figshare.9894599
title: MOESM1 of The impact of genomic selection on genetic diversity and genetic gain in three French dairy cattle breeds

description: Additional file 1: Table S1. Description of the three studied dairy cattle breeds: Montbéliarde, Normande and Holstein.
DOI: 10.6084/m9.figshare.9894599.v1
title: MOESM1 of The impact of genomic selection on genetic diversity and genetic gain in three French dairy cattle breeds

description: Additional file 1: Table S1. Description of the three studied dairy cattle breeds: Montbéliarde, Normande and Holstein.
DOI: 10.6084/m9.figshare.9894584
title: data for Figure 5D-F, rostral-most section

description: processed quantified RNAscope data for image set 042317_Htr7_Tac1_Th_B5614_S15_MIP_stitched
DOI: 10.6084/m9.figshare.9894572
title: data for Figure 4J-L

description: processed quantified RNAscope data from image set 170727_Kremen1_Id4_Sema5b_B5589_s31
DOI: 10.6084/m9.figshare.9894578
title: data for Figure 4N-O

description: processed quantified RNAscope data for image set 170811_Synpr_Nts_Cxcl14_contra_MIP_stitched
DOI: 10.6084/m9.figshare.9894569
title: data for Figure 4C, D

description: processed quantified RNAscope data for image set 091516_RNAscope_Cnr1_Tac1_Crym
DOI: 10.6084/m9.figshare.9894569.v1
title: data for Figure 4C, D

description: processed quantified RNAscope data for image set 091516_RNAscope_Cnr1_Tac1_Crym
DOI: 10.6084/m9.figshare.9894578.v1
title: data for Figure 4N-O

description: processed quantified RNAscope data for image set 170811_Synpr_Nts_Cxcl14_contra_MIP_stitched
DOI: 10.6084/m9.figshare.9894566
title: data for Figure 3B, C

description: dataset 122016_Tac1_Nxph4_Penkprocessed quantified RNAscope data
DOI: 10.6084/m9.figshare.9894572.v1
title: data for Figure 4J-L

description: processed quantified RNAscope data from image set 170727_Kremen1_Id4_Sema5b_B5589_s31
DOI: 10.6084/m9.figshare.9894584.v2
title: data for Figure 5D-F, rostral-most section

description: processed quantified RNAscope data for image set 042317_Htr7_Tac1_Th_B5614_S15_MIP_stitched
DOI: 10.6084/m9.figshare.9894551
title: data for Figure 3E-G

description: image and processed data
DOI: 10.6084/m9.figshare.9894557
title: data for Figure 3N, caudal aspect

description: image set 042317_s15processed, quantified RNAscope data
DOI: 10.6084/m9.figshare.9894563
title: data for figure 3N, rostral aspect

description: process quantified RNAscope data for image set 042317_s02
DOI: 10.6084/m9.figshare.9894584.v1
title: data for Figure 5D-F

description: processed quantified RNAscope data for image set 042317_Htr7_Tac1_Th_B5614_S15_MIP_stitched
DOI: 10.6084/m9.figshare.9894551.v1
title: data for Figure 3E-G

description: image and processed data
DOI: 10.6084/m9.figshare.9894563.v1
title: data for figure 3N, rostral aspect

description: process quantified RNAscope data for image set 042317_s02
DOI: 10.6084/m9.figshare.9894548
title: Tac1-Nxph4-Penk rostral aspect

description: quantified RNAscope data for Figure 3I, rostral aspect
DOI: 10.6084/m9.figshare.9894566.v1
title: data for Figure 3B, C

description: dataset 122016_Tac1_Nxph4_Penkprocessed quantified RNAscope data
DOI: 10.6084/m9.figshare.9894557.v1
title: data for Figure 3N, caudal aspect

description: image set 042317_s15processed, quantified RNAscope data
DOI: 10.6084/m9.figshare.9894527
title: gene expression counts

description: gene expression counts of smart-seq2 data of primary adult murine striatal SPNs. There are four data files: metadata.csv, which contains the metadata; counts.csv, which are the raw gene counts; cellnames.csv, which are the cell names; and genes.csv, which are the gene names.
DOI: 10.6084/m9.figshare.9894530
title: Tac1-Nxph4-Penk caudal

description: data for Figure 3I. Tac1-Nxph4-Penk caudal
DOI: 10.6084/m9.figshare.9894548.v1
title: Tac1-Nxph4-Penk rostral aspect

description: quantified RNAscope data for Figure 3I, rostral aspect
DOI: 10.6084/m9.figshare.9894530.v1
title: Tac1-Nxph4-Penk caudal

description: data for Figure 3I. Tac1-Nxph4-Penk caudal
DOI: 10.6084/m9.figshare.9894425
title: An activating variant in CTNNB1 is associated with a sclerosing bone dysplasia and adrenocortical neoplasia.

description: Activating <i>CTNNB1</i> variant in a sclerosing bone dysplasia.
DOI: 10.6084/m9.figshare.9894425.v1
title: An activating variant in CTNNB1 is associated with a sclerosing bone dysplasia and adrenocortical neoplasia.

description: Activating <i>CTNNB1</i> variant in a sclerosing bone dysplasia.
DOI: 10.6084/m9.figshare.9894398
title: Figshare File 1

description: Calculations used to derive the amount of 13C-labeled leucine incorporated into cells. File is in .docx format.
DOI: 10.6084/m9.figshare.9894401
title: Figshare File 2

description: Parameters file used for Comet searches of mass spectrometry data. File is in .docx format.
DOI: 10.6084/m9.figshare.9894404
title: Figshare File 3

description: Parameters file used for Abacus analysis of Comet search results. File is in .docx format.
DOI: 10.6084/m9.figshare.9894395
title: Figshare File 6

description: Raw proteomics mass spectrometry files record. Files were deposited in the online repository PRIDE under the ProteomExchange with identifier PXD008661. The first column of the table contains the file name, the second column is the file format, third is how the file was produced, and fourth is the growth stage the data are derived from. Table is in .xlsx format.
DOI: 10.6084/m9.figshare.9894374
title: Figshare File 5

description: Proteomics data from the 13C-labeled leucine experiment. The data are arranged similarly to Online-only Table 1, except the last 4 columns are indicators of label incorporation into the protein. An asterisk in the column indicates that a peptide with a 13C label was detected for that protein. Table is in .xlsx format.
DOI: 10.6084/m9.figshare.9894401.v1
title: Figshare File 2

description: Parameters file used for Comet searches of mass spectrometry data. File is in .docx format.
DOI: 10.6084/m9.figshare.9894404.v1
title: Figshare File 3

description: Parameters file used for Abacus analysis of Comet search results. File is in .docx format.
DOI: 10.6084/m9.figshare.9894395.v1
title: Figshare File 6

description: Raw proteomics mass spectrometry files record. Files were deposited in the online repository PRIDE under the ProteomExchange with identifier PXD008661. The first column of the table contains the file name, the second column is the file format, third is how the file was produced, and fourth is the growth stage the data are derived from. Table is in .xlsx format.
DOI: 10.6084/m9.figshare.9894365
title: Shale models

description: The data contains multicomponent and multiscale shale models. These models exhibit the dynamic variations of the components and pores when the thermal maturation changes. For further information, please contact Yuqi Wu: ywu9@uwyo,edu; wuyuqi150348@163.com.
DOI: 10.6084/m9.figshare.9894371
title: Figshare File 4

description: Proteomics data from the growth experiment (the proteomics without 13C label). The first column contains the protein identifier (Uniprot accession), followed by the protein length, then the total number of unique peptides detected for that protein across all biological and technical replicates (‘No. Unique Peptides Across All Replicates). The subsequent columns contain the total spectral counts and Normalized Spectral Abundance Factor values for each mass spectrometry analysis, (e.g., Early Exp 1, the first technical replicate for early exponential stage). Table is in .xlsx format.
DOI: 10.6084/m9.figshare.9894272
title: Salmonella from the pork production process in Thailand

description: Sequenced and assembled Salmonella enterica isolates collected from the Thai pork production chain. <br>Core genome sequence analysis to characterize Salmonella enterica serovar Rissen ST469 from a swine production chain<br>https://www.sciencedirect.com/science/article/pii/S0168160519301485<br>High Resolution Whole Genome Multilocus Sequence Typing (wgMLST) Schemes for Salmonella enterica Weltevreden Epidemiologic Investigations<br>http://www.mbl.or.kr/journal/view.html?book=Journal&tops=&start=0&scale=50&key=all&key_word=tadee&Vol=&Num=&PG=&year1=&year2=&sort=publish_Date+desc&aut_box=Y&sub_box=Y&sos_box=&key_box=&pub_box=Y&abs_box=&mod=&mnum=3140<br><br>
DOI: 10.6084/m9.figshare.9894170
title: Angiosperms of dry grasslands and savannahs of Jalapão, the largest conserved Cerrado area in Brazil - Supplementary Material

description: <b>Table S1</b> – List of plant experts who helped by confirming or identifying specimens; organized alphabetically by families. <br> <b>Table S2</b> – Taxa, followed by habit and voucher, recorded in this study for the Jalapão region, Tocantins, Brazil, within open cerrado physiognomies with dry non-rocky soils. Voucher prefix is the herbarium acronym, followed by collector and collector number. <br>Supplementary material of the paper <b>Angiosperms of dry grasslands and savannahs of Jalapão, the largest conserved Cerrado area in Brazil</b>, published at Rodriguésia vol.70. 2019